PeakID (cmd=annotatePeaks.pl ./merged_peaks/idr_peaks_merged.txt mm10 -size 1000 -norm 1e7 -d /home/h1bennet/strains/data/H3K27Ac/control/02_aj_Kupffer_H3K27Ac_control_young_AJ10ABC_161208 /home/h1bennet/strains/data/H3K27Ac/control/02_aj_Kupffer_H3K27Ac_control_young_AJ11AB_161208 /home/h1bennet/strains/data/H3K27Ac/control_cohort2_untrimmed/tag_mouse_aj_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_AJ1104_TDT_l20201212_GGCTTAAG_TCGTGACC_S29_L001.aj.bowtie2_shifted_from_AJ.sam /home/h1bennet/strains/data/H3K27Ac/control/01_balbc_Kupffer_H3K27Ac_control_young_Balb10ABC_170915 /home/h1bennet/strains/data/H3K27Ac/control/01_balbc_Kupffer_H3K27Ac_control_young_Balb11AB_170915 /home/h1bennet/strains/data/H3K27Ac/control_cohort2_untrimmed/tag_mouse_balbcj_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_BALB1104_TDT_l20201212_AATCCGGA_CTACAGTT_S30_L001.balbcj.bowtie2_shifted_from_BALBCJ.sam /home/h1bennet/strains/data/H3K27Ac/control/00_C57_Kupffer_H3K27Ac_control_young_C571A_170915 /home/h1bennet/strains/data/H3K27Ac/control/00_C57_Kupffer_H3K27Ac_control_young_C572A_180423 /home/h1bennet/strains/data/H3K27Ac/control_cohort2_untrimmed/tag_mouse_c57bl6j_Male_Kupffer_ChIP_H3K27ac_Chow_healthyoung_C571104_TDT_l20201212_TAATACAG_ATATTCAC_S31_L001.c57bl6j.bowtie2_shifted_from_C57BL6J.sam)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	h3k27ac_AJ_Kupffer_Control_rep1	h3k27ac_AJ_Kupffer_Control_rep3	h3k27ac_AJ_Kupffer_Control_rep2	h3k27ac_BALBcJ_Kupffer_Control_rep1	h3k27ac_BALBcJ_Kupffer_Control_rep3	h3k27ac_BALBcJ_Kupffer_Control_rep2	h3k27ac_C57_Kupffer_Control_rep1	h3k27ac_C57_Kupffer_Control_rep3	h3k27ac_C57_Kupffer_Control_rep2
Merged-chrX-36101513-3	chrX	36101015	36102015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10593.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	77.8	95.38	37.0	42.51	36.39	40.99	54.92	46.43	20.61
Merged-chr5-143622461-3	chr5	143621940	143622940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011182)	promoter-TSS (NM_011182)	-7.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	115.55	88.01	87.87	124.82	97.5	114.94	115.12	106.56	74.94
Merged-chr11-100814679-3	chr11	100814172	100815172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	7898.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	31.46	26.73	35.15	24.96	24.72	32.96	33.8	32.72	31.23
Merged-chr6-91712963-3	chr6	91712457	91713457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	28890.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	161.89	176.48	151.69	211.19	150.68	151.92	173.21	175.54	128.03
Merged-chr17-70831832-3	chr17	70831391	70832391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	14886.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	247.13	206.43	138.74	239.52	153.01	246.76	188.0	221.53	124.91
Merged-chr10-13868970-3	chr10	13868505	13869505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-48.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	199.07	140.08	83.25	178.8	150.22	79.58	192.23	141.05	58.71
Merged-chr11-98907620-3	chr11	98907098	98908098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011799)	promoter-TSS (NM_011799)	-291.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	13.73	11.52	24.97	19.57	11.66	7.23	8.45	7.07	9.99
Merged-chr9-37488717-1	chr9	37488217	37489217	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-604.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	224.82	296.75	172.04	242.22	241.65	184.87	249.26	297.14	174.87
Merged-chr6-72938085-3	chr6	72937579	72938579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20153.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	62.35	58.98	18.5	31.04	15.39	4.82	46.47	44.66	18.11
Merged-chrX-74429029-3	chrX	74428564	74429564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010547)	promoter-TSS (NM_010547)	97.0	NM_008062	14381.0	Mm.27210	NM_008062	ENSMUSG00000031400	G6pdx	G28A|G6pd|Gpdx	glucose-6-phosphate dehydrogenase X-linked	protein-coding	112.69	144.23	98.05	99.18	129.69	138.25	130.97	178.19	122.41
Merged-chr6-42349121-3	chr6	42348628	42349628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	-700.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	220.24	169.11	141.52	196.34	152.08	166.38	154.2	175.1	114.91
Merged-chr6-84751623-3	chr6	84751122	84752122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	Lx5|LINE|L1	-157714.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	84.09	93.54	57.35	97.83	69.51	81.18	84.49	103.02	74.94
Merged-chr10-117417499-3	chr10	117416999	117417999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29936.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	191.07	116.12	110.07	195.67	138.09	127.8	162.65	187.04	83.69
Merged-chr6-40325445-3	chr6	40324816	40325816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	-162.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	18.88	17.05	12.02	32.39	35.92	26.53	23.24	24.76	20.61
Merged-chr4-9682730-3	chr4	9682246	9683246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13402.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	82.95	94.0	19.42	66.8	60.65	42.6	117.24	86.66	59.33
Merged-chr10-68282640-3	chr10	68282158	68283158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	149.88	109.67	108.22	157.21	100.3	122.98	177.44	185.71	101.17
Merged-chr2-115581690-3	chr2	115581158	115582158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145898)	promoter-TSS (NM_001145898)	-58.0	NM_207264	399568.0	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	60.64	51.61	31.45	65.45	80.71	43.4	73.93	72.07	38.1
Merged-chr10-8874187-3	chr10	8873681	8874681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	296.32	197.22	189.62	309.02	182.4	215.42	217.57	179.08	103.67
Merged-chr3-127487449-1	chr3	127486949	127487949	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	11666.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.57	1.84	0.0	1.35	1.87	4.82	71.82	76.05	36.22
Merged-chr1-88224254-3	chr1	88223754	88224754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2766.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	36.61	51.15	49.95	63.42	44.32	60.28	77.1	71.63	85.56
Merged-chr6-85333257-6	chr6	85332720	85333720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178639, intron 1 of 13)	CpG	202.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	189.92	175.56	177.59	174.75	134.82	220.24	167.93	194.55	127.4
Merged-chr14-70785524-3	chr14	70785033	70786033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11152.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	18.31	26.26	24.05	23.62	33.12	40.19	25.35	29.18	37.47
Merged-chr9-113741408-3	chr9	113740928	113741928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286599)	promoter-TSS (NM_001286599)	-45.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	546.88	516.54	409.75	443.96	399.8	368.14	415.08	428.02	282.91
Merged-chr11-94549156-3	chr11	94548656	94549656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013381)	promoter-TSS (NM_001013381)	51.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	123.56	104.14	90.65	118.08	89.1	74.75	129.91	119.83	51.21
Merged-chr5-122219180-3	chr5	122218679	122219679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359454, intron 3 of 7)	intron (NM_001359454, intron 3 of 7)	8892.0	NM_028752	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	8.58	9.22	9.25	30.36	7.0	11.25	11.62	11.5	2.5
Merged-chr3-105898514-3	chr3	105898023	105899023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-5898.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	48.05	61.28	53.65	74.22	29.39	78.77	32.74	43.33	37.47
Merged-chr16-30599612-3	chr16	30599067	30600067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-156.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	212.23	178.32	154.47	206.46	143.22	139.86	144.7	157.41	93.68
Merged-chr7-64392235-3	chr7	64391697	64392697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	39.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	143.01	191.69	135.04	188.92	202.93	141.47	197.51	202.07	134.27
Merged-chr7-27591502-3	chr7	27590983	27591983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110208)	promoter-TSS (NM_001110208)	-69.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	134.43	161.27	91.57	128.2	111.5	125.39	201.73	190.57	106.79
Merged-chr2-152830656-3	chr2	152830170	152831170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	47.0	NM_001289716	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	233.4	233.62	176.67	227.38	221.13	128.61	176.38	226.39	96.8
Merged-chr5-19666663-3	chr5	19666162	19667162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-240856.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	42.9	77.41	37.92	70.85	67.18	51.44	122.52	129.11	49.96
Merged-chr2-126707271-3	chr2	126706773	126707773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252580)	promoter-TSS (NM_001252580)	-55.0	NM_001252580	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	249.99	211.5	184.99	188.25	227.19	225.06	229.19	188.81	121.78
Merged-chr6-113668910-3	chr6	113668428	113669428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-28122.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	244.84	149.75	152.62	205.79	116.63	127.0	185.89	195.0	82.44
Merged-chr10-121583217-3	chr10	121582709	121583709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 2 of 20)	intron (NM_019786, intron 2 of 20)	3585.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	30.32	41.93	32.37	34.41	17.73	14.47	30.63	26.97	21.23
Merged-chr2-45050037-3	chr2	45049534	45050534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26857.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	159.03	168.65	72.15	176.1	134.35	117.35	107.73	134.86	93.68
Merged-chr1-153502006-5	chr1	153501485	153502485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14325.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	192.21	170.49	103.59	163.96	122.23	157.54	170.05	166.25	106.79
Merged-chr18-12237107-3	chr18	12236619	12237619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-733.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	56.63	115.2	73.07	70.17	71.38	84.4	97.17	134.86	59.33
Merged-chr6-4749343-3	chr6	4748844	4749844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040611, intron 1 of 1)	intron (NM_001040611, intron 1 of 1)	2038.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	1.14	3.69	1.85	3.37	1.87	3.22	4.22	1.33	2.5
Merged-chr7-30412866-3	chr7	30412349	30413349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011662)	promoter-TSS (NM_011662)	-939.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	289.46	271.4	197.94	280.68	258.45	251.59	273.55	341.8	152.38
Merged-chr6-87518806-3	chr6	87518327	87519327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	14432.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	49.2	36.4	17.57	45.21	41.99	20.09	47.53	28.3	19.36
Merged-chr8-3621397-3	chr8	3620887	3621887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026156)	promoter-TSS (NM_026156)	-91.0	NM_026156	67439.0	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	56.63	74.19	63.82	66.12	74.17	53.05	95.06	79.15	41.84
Merged-chr4-127045664-3	chr4	127045168	127046168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15486.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	96.68	116.12	86.02	82.32	71.38	92.44	167.93	146.36	84.94
Merged-chr1-184618217-3	chr1	184617735	184618735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60544.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	127.57	118.42	68.45	140.34	82.57	94.85	80.27	96.39	70.57
Merged-chr18-68160009-3	chr18	68159518	68160518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	Tigger6a|DNA|TcMar-Tigger	-67928.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	100.11	105.52	35.15	180.15	108.23	96.45	82.38	62.35	30.6
Merged-chr6-90597681-3	chr6	90597183	90598183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356412, intron 21 of 22)	intron (NM_001356412, intron 21 of 22)	-7197.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	21.74	20.74	12.95	27.66	13.53	23.31	40.14	30.51	21.23
Merged-chr7-99858988-3	chr7	99858464	99859464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025668)	promoter-TSS (NM_025668)	-81.0	NM_025668	66624.0	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	117.84	141.92	64.75	137.64	120.36	79.58	123.57	116.73	62.45
Merged-chr14-67715454-1	chr14	67714954	67715954	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285933)	promoter-TSS (NM_001285933)	156.0	NM_001110162	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	41.76	58.06	39.77	42.51	38.25	33.76	58.09	70.3	41.84
Merged-chr5-72868468-3	chr5	72867977	72868977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113460)	promoter-TSS (NM_001113460)	-29.0	NM_001113460	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	26.89	26.26	9.25	49.25	66.71	55.46	22.18	19.9	8.12
Merged-chr11-86614345-3	chr11	86613882	86614882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-30224.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	129.86	147.45	82.32	130.9	86.77	81.99	133.08	177.75	85.56
Merged-chr4-28944432-3	chr4	28943920	28944920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-123659.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	21.74	20.27	18.5	19.57	18.19	20.9	11.62	22.55	34.35
Merged-chr1-152796965-3	chr1	152796461	152797461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-3192.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	154.45	119.34	98.05	122.12	79.31	91.63	96.11	133.09	66.2
Merged-chrX-151929599-3	chrX	151929097	151930097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021523, intron 77 of 82)	intron (NM_021523, intron 77 of 82)	16383.0	NR_029753	723947.0		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	29.75	29.49	25.9	35.09	26.59	26.53	45.42	40.68	23.11
Merged-chr4-43045877-3	chr4	43045379	43046379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	341.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	159.03	121.19	125.79	141.69	97.97	105.3	124.63	142.82	61.83
Merged-chr2-121271488-3	chr2	121270990	121271990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290830)	promoter-TSS (NM_001290830)	-83.0	NM_013735	27223.0	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	47.48	36.4	31.45	29.01	19.13	12.86	35.91	29.63	22.48
Merged-chr9-66350420-3	chr9	66349921	66350921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-29.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	226.53	221.64	230.31	218.61	193.13	154.33	214.41	262.65	141.14
Merged-chr13-41016263-3	chr13	41015743	41016743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025387)	promoter-TSS (NM_025387)	-7.0	NM_025387	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	178.48	195.37	108.22	181.5	214.13	167.99	204.9	205.17	108.04
Merged-chr4-141419550-3	chr4	141419056	141420056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1223.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	8.01	9.68	7.4	3.37	6.53	0.8	5.28	7.96	3.75
Merged-chr6-72753039-3	chr6	72752545	72753545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	36000.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	49.77	37.78	29.6	44.53	18.19	45.01	83.44	71.19	31.23
Merged-chr17-46328034-3	chr17	46327525	46328525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170680)	promoter-TSS (NM_170680)	-2.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	84.09	82.02	105.44	105.26	90.5	112.53	104.56	103.47	97.43
Merged-chr1-151041174-3	chr1	151040675	151041675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47740.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	108.12	123.95	107.29	114.03	115.69	100.47	173.21	165.37	58.71
Merged-chr7-81855123-3	chr7	81854646	81855646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3855.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	116.7	107.82	58.27	124.82	73.71	77.97	104.56	75.17	82.44
Merged-chr11-120035002-3	chr11	120034546	120035546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	6735.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	41.19	16.59	13.87	22.27	14.93	32.96	28.52	14.59	11.24
Merged-chr6-123171246-3	chr6	123170753	123171753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-1770.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	60.07	67.74	35.15	60.05	55.05	62.7	61.26	56.6	42.47
Merged-chr8-128685968-6	chr8	128685489	128686489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	CpG	335.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	406.73	381.53	353.33	433.17	374.14	312.67	419.31	386.9	245.44
Merged-chr10-84335651-3	chr10	84335166	84336166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104805.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	30.89	45.16	35.15	68.15	65.31	78.77	51.75	55.71	29.98
Merged-chr15-79028445-3	chr15	79027941	79028941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008197, exon 1 of 1)	5' UTR (NM_008197, exon 1 of 1)	229.0	NM_008197	14958.0	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	62.35	40.09	50.87	70.17	43.39	64.3	59.15	43.77	44.97
Merged-chr5-117357653-3	chr5	117357156	117358156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	CpG	351.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	270.01	249.28	210.89	321.17	267.31	221.85	301.01	230.37	157.38
Merged-chr13-41600169-3	chr13	41599651	41600651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6065.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	131.57	170.95	96.2	103.23	74.17	95.65	132.02	147.24	94.3
Merged-chr7-142390353-3	chr7	142389855	142390855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2485.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	119.56	118.42	110.99	99.86	70.44	137.45	94.0	95.95	86.18
Merged-chr18-35772115-3	chr18	35771621	35772621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019912, intron 1 of 6)	CpG	562.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	271.15	265.87	281.19	257.74	217.39	220.24	323.19	279.89	212.96
Merged-chr5-146797282-1	chr5	146796782	146797782	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2326.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	10.3	9.68	15.72	2.7	7.46	10.45	50.7	40.68	24.36
Merged-chr14-105300758-2	chr14	105300257	105301257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 5 of 7)	intron (NM_029561, intron 5 of 7)	42084.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	41.76	39.63	22.2	31.04	30.32	30.54	1.06	3.1	0.0
Merged-chr5-31193174-3	chr5	31192671	31193671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	-32.0	NM_010122	13667.0	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	223.1	264.49	218.29	221.31	252.38	197.73	247.15	233.02	139.89
Merged-chr7-6285546-3	chr7	6285044	6286044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1036.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	212.23	214.73	110.07	239.52	238.85	190.5	222.86	232.14	94.3
Merged-chr5-43865483-3	chr5	43864990	43865990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3319.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	41.76	41.01	56.42	56.0	49.45	89.22	52.81	38.03	50.59
Merged-chr12-71114073-3	chr12	71113582	71114582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029227, intron 2 of 4)	intron (NM_029227, intron 2 of 4)	2654.0	NM_029227	75266.0	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20-like	protein-coding	3.43	5.53	5.55	4.72	1.87	3.22	7.39	2.21	1.25
Merged-chr3-8747342-3	chr3	8746857	8747857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-80319.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	122.42	127.18	92.5	152.49	149.75	113.33	156.32	152.99	56.21
Merged-chr17-35394068-1	chr17	35393568	35394568	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_051981)	promoter-TSS (NR_051981)	-31.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	39.47	19.35	22.2	18.22	8.86	6.43	68.65	59.25	19.36
Merged-chr10-37138925-3	chr10	37138405	37139405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	21.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	143.01	205.51	135.97	143.71	168.41	205.77	143.64	168.91	129.28
Merged-chr5-130079403-3	chr5	130078879	130079879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	9.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	74.37	64.51	61.05	66.8	40.59	54.66	86.61	56.6	45.59
Merged-chr15-36902018-3	chr15	36901521	36902521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105092.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.15	4.61	3.7	5.4	1.87	4.02	12.67	11.05	9.99
Merged-chr11-52098654-3	chr11	52098172	52099172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019411)	promoter-TSS (NM_019411)	-152.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	584.07	436.82	357.03	555.29	403.06	338.39	467.89	389.11	263.55
Merged-chr8-40304620-3	chr8	40304119	40305119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3310.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	30.32	20.74	11.1	22.27	10.73	23.31	45.42	38.91	26.85
Merged-chr16-24136720-3	chr16	24136226	24137226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54036.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	42.9	51.15	64.75	50.6	47.12	38.58	42.25	33.6	23.11
Merged-chr11-76479893-3	chr11	76479388	76480388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	MER117|DNA|hAT-Charlie	-11423.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	267.15	241.45	117.47	292.83	229.06	192.91	204.9	263.97	124.91
Merged-chr6-108719028-3	chr6	108718535	108719535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58101.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	60.64	38.71	35.15	61.4	46.18	21.7	36.97	46.87	29.35
Merged-chr1-186677816-3	chr1	186677321	186678321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009367, intron 1 of 6)	B4A|SINE|B4	28168.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	6.29	2.3	8.32	8.1	2.8	3.22	6.34	3.54	8.74
Merged-chr11-115631668-2	chr11	115631167	115632167	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3372.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	201.93	157.59	110.99	231.43	128.29	142.27	241.87	229.48	141.14
Merged-chrX-73228155-3	chrX	73227653	73228653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007978)	promoter-TSS (NM_007978)	-153.0	NM_007978	14070.0	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding	66.36	89.85	57.35	68.15	86.77	73.14	80.27	72.96	37.47
Merged-chr8-40598094-3	chr8	40597594	40598594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 3 of 13)	MER33|DNA|hAT-Charlie	36698.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	21.74	35.02	7.4	20.24	28.46	27.33	104.56	130.88	82.44
Merged-chr15-25321797-3	chr15	25321279	25322279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91985.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	95.53	101.37	61.05	99.18	106.83	86.81	105.62	147.68	81.19
Merged-chr6-57796069-3	chr6	57795558	57796558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	29067.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	40.62	50.23	25.9	49.93	20.06	21.7	29.57	17.24	24.98
Merged-chr18-34624153-3	chr18	34623649	34624649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-475.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	50.34	81.56	70.3	50.6	71.84	96.45	68.65	82.24	41.84
Merged-chr6-136518734-3	chr6	136518239	136519239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019426)	promoter-TSS (NM_019426)	-112.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	140.73	181.09	71.22	167.33	136.69	108.51	152.09	153.87	82.44
Merged-chr18-46742482-2	chr18	46741964	46742964	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026217)	promoter-TSS (NM_026217)	588.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	98.97	64.97	86.95	101.88	55.98	65.11	115.12	78.71	51.84
Merged-chr1-91398770-3	chr1	91398226	91399226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355152)	promoter-TSS (NM_001355152)	97.0	NM_023343	67444.0	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	151.59	132.71	116.54	116.73	102.63	103.69	155.26	115.41	66.82
Merged-chr8-11452782-3	chr8	11452274	11453274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25155.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	255.71	268.64	135.97	313.07	269.64	200.95	272.5	293.6	139.27
Merged-chr11-87448909-3	chr11	87448420	87449420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	21329.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	97.82	79.72	32.37	108.63	60.65	45.01	70.76	72.96	31.85
Merged-chr1-173742466-3	chr1	173741947	173742947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-638.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	252.85	306.88	193.32	358.28	369.94	293.38	284.11	347.99	164.88
Merged-chr14-45664452-3	chr14	45663931	45664931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-6288.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	125.85	144.23	55.5	149.11	88.17	107.71	260.88	335.16	134.9
Merged-chr2-59338637-3	chr2	59338114	59339114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 13 of 20)	intron (NM_175464, intron 13 of 20)	48068.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	226.53	199.98	176.67	239.52	234.19	167.99	216.52	242.31	92.43
Merged-chr2-69664210-3	chr2	69663712	69664712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028284, intron 9 of 11)	RSINE1|SINE|B4	-5908.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	52.06	50.23	38.85	72.19	68.11	65.91	66.54	59.25	46.22
Merged-chr11-75564370-3	chr11	75563860	75564860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12931.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	188.78	146.07	114.69	167.33	131.56	148.7	114.07	125.13	84.31
Merged-chr18-64618942-3	chr18	64618481	64619481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001488, intron 1 of 27)	intron (NM_001001488, intron 1 of 27)	42019.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	13.73	10.14	0.0	10.12	3.27	6.43	0.0	1.77	3.12
Merged-chr18-67396711-3	chr18	67396207	67397207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 3 of 3)	intron (NM_026473, intron 3 of 3)	5976.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	131.57	110.13	65.67	106.61	85.37	77.97	57.03	57.48	45.59
Merged-chr8-83141027-3	chr8	83140511	83141511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24341.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	180.77	225.78	131.34	235.48	223.46	178.44	145.75	166.7	87.43
Merged-chr3-41565608-3	chr3	41565112	41566112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	CpG	732.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	121.85	66.81	94.35	135.62	87.7	81.18	141.53	81.36	51.84
Merged-chr3-142561713-3	chr3	142561225	142562225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289492, intron 2 of 11)	intron (NM_001289492, intron 2 of 11)	1369.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	97.82	105.52	99.89	129.55	116.16	165.58	125.69	115.41	72.45
Merged-chr13-97187895-3	chr13	97187408	97188408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010422, intron 5 of 13)	intron (NM_010422, intron 5 of 13)	10449.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	72.08	62.21	31.45	91.09	64.38	69.13	80.27	76.94	64.95
Merged-chr10-7064293-3	chr10	7063813	7064813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41128.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	39.47	44.24	27.75	61.4	37.32	32.96	27.46	26.97	9.37
Merged-chr13-59585209-3	chr13	59584724	59585724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045633)	promoter-TSS (NR_045633)	-1.0	NR_045633	319469.0	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	41.19	39.17	36.07	37.11	28.92	36.17	63.37	47.31	14.99
Merged-chr14-105082317-1	chr14	105081817	105082817	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32359.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	4.58	3.69	5.55	8.77	1.87	0.0	4.22	2.65	3.12
Merged-chr5-113830458-3	chr5	113829965	113830965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009151)	promoter-TSS (NM_009151)	36.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	104.69	86.63	50.87	92.44	80.24	76.36	119.35	143.26	49.96
Merged-chr11-100822588-3	chr11	100822086	100823086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011489)	promoter-TSS (NM_011489)	-16.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	208.8	183.39	108.22	152.49	129.69	132.63	139.42	156.53	91.18
Merged-chr14-66235718-3	chr14	66235200	66236200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-21876.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	97.25	113.81	56.42	95.81	80.71	95.65	115.12	145.92	59.33
Merged-chr13-111508789-3	chr13	111508291	111509291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18664.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	21.74	29.49	29.6	18.89	21.46	35.37	32.74	40.24	19.36
Merged-chr3-83841695-3	chr3	83841192	83842192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011905)	promoter-TSS (NM_011905)	-84.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	242.55	200.9	172.04	240.2	175.87	170.4	160.54	227.27	116.79
Merged-chr7-49759163-3	chr7	49758695	49759695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146052)	promoter-TSS (NM_001146052)	89.0	NM_001146049	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	38.33	48.38	25.9	43.86	62.05	48.23	45.42	41.12	36.22
Merged-chr17-29360895-3	chr17	29360406	29361406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013710)	promoter-TSS (NM_013710)	-8.0	NM_013710	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	36.04	19.81	20.35	25.64	22.39	34.56	15.84	18.57	21.23
Merged-chr12-17690538-3	chr12	17690059	17691059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361645)	promoter-TSS (NM_001361645)	-250.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	94.96	99.53	106.37	115.38	84.44	110.92	135.19	111.43	101.8
Merged-chr2-128715652-1	chr2	128715152	128716152	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	16737.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	99.54	71.42	77.7	97.83	60.18	79.58	105.62	114.52	55.58
Merged-chr1-16228765-3	chr1	16228257	16229257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025303)	TTS (NM_025303)	122875.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	130.43	183.85	78.62	110.65	118.03	130.21	149.98	141.49	114.91
Merged-chr7-46834057-3	chr7	46833550	46834550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11754.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	58.35	76.49	71.22	97.83	111.5	69.93	118.29	101.26	48.09
Merged-chr19-11119478-3	chr19	11118993	11119993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	11385.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	106.4	100.45	69.37	105.93	98.43	105.3	63.37	42.01	56.21
Merged-chr7-104446148-3	chr7	104445651	104446651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-26.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	156.74	152.52	135.04	167.33	166.54	126.19	179.55	164.93	105.55
Merged-chr17-5802262-3	chr17	5801784	5802784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045079, intron 2 of 2)	MER34A1|LTR|ERV1	2794.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	25.74	19.81	4.62	23.62	19.59	8.04	16.9	16.36	11.87
Merged-chr18-44381102-3	chr18	44380586	44381586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	CpG	586.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	213.95	236.84	204.41	155.19	169.34	181.66	177.44	203.84	149.26
Merged-chr12-17773876-3	chr12	17773379	17774379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	83070.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	42.33	44.7	33.3	39.13	45.25	48.23	74.99	68.98	60.58
Merged-chr3-108210544-3	chr3	108210044	108211044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289545)	promoter-TSS (NM_001289545)	-17.0	NM_175183	72522.0	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	109.83	101.37	56.42	93.11	90.97	90.02	115.12	68.54	66.2
Merged-chr15-91191452-3	chr15	91190958	91191958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358967, exon 1 of 10)	exon (NM_001358967, exon 1 of 10)	549.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	69.22	88.47	87.87	76.24	86.77	73.14	92.94	113.19	54.96
Merged-chr11-3170984-1	chr11	3170484	3171484	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	RSINE1|SINE|B4	22479.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	81.8	95.84	98.05	78.27	105.43	123.78	2.11	1.77	159.25
Merged-chr17-33781289-3	chr17	33780799	33781799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020581, exon 1 of 7)	exon (NM_020581, exon 1 of 7)	276.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	105.83	66.35	67.52	114.03	87.24	108.51	41.19	30.95	54.96
Merged-chr4-136180603-1	chr4	136180103	136181103	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-179.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	5.15	3.69	5.55	25.64	18.66	19.29	6.34	1.77	2.5
Merged-chr1-106511838-3	chr1	106511355	106512355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34776.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	30.89	30.41	20.35	45.21	18.66	12.86	30.63	26.97	16.24
Merged-chr5-134232789-3	chr5	134232275	134233275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3150.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	176.19	184.77	119.32	226.71	191.27	185.68	243.98	236.56	109.29
Merged-chr7-16285595-3	chr7	16285102	16286102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172297)	promoter-TSS (NM_172297)	-943.0	NM_172297	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	41.76	22.58	38.85	44.53	29.39	45.82	26.4	30.07	18.74
Merged-chr16-22358991-3	chr16	22358500	22359500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64012.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	156.74	144.69	117.47	115.38	130.16	128.61	190.11	188.36	111.79
Merged-chr7-127511997-3	chr7	127511500	127512500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304266)	promoter-TSS (NM_001304266)	17.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	211.66	159.43	101.74	248.3	178.67	171.21	229.19	215.78	118.66
Merged-chr6-97379546-1	chr6	97379046	97380046	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	79740.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.01	9.22	11.1	11.47	12.6	32.15	9.51	9.29	3.75
Merged-chr11-94761058-3	chr11	94760554	94761554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001105561, exon 1 of 5)	5' UTR (NM_001105561, exon 1 of 5)	128.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	116.7	133.63	63.82	121.45	137.62	111.73	168.99	185.27	67.45
Merged-chr3-88716880-3	chr3	88716380	88717380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009069)	promoter-TSS (NM_009069)	26.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	52.63	54.37	55.5	67.47	59.71	69.13	81.33	58.37	49.96
Merged-chr9-67845248-3	chr9	67844735	67845735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	4839.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	45.19	69.58	45.32	43.86	36.85	60.28	32.74	42.01	30.6
Merged-chr1-55405833-3	chr1	55405350	55406350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114663)	promoter-TSS (NM_001114663)	-96.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	47.48	41.01	43.47	48.58	48.05	49.83	51.75	44.22	21.86
Merged-chr8-94386392-3	chr8	94385896	94386896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022331)	promoter-TSS (NM_022331)	-33.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	561.76	530.36	322.81	499.97	547.21	328.75	425.64	499.21	227.33
Merged-chr15-8663923-3	chr15	8663427	8664427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	L3|LINE|CR1	46880.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	13.73	7.37	10.17	6.75	4.67	6.43	9.51	12.38	18.74
Merged-chr13-54621761-3	chr13	54621268	54622268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178397)	promoter-TSS (NM_178397)	-16.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	256.28	265.41	188.69	209.16	238.85	166.38	237.64	231.25	120.53
Merged-chr8-117258094-3	chr8	117257583	117258583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	(T)n|Simple_repeat|Simple_repeat	1064.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	204.8	188.92	156.32	178.8	170.74	163.97	217.57	237.0	153.01
Merged-chr5-139380563-3	chr5	139380067	139381067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	-72.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	268.87	228.55	234.01	331.29	221.13	188.09	253.48	280.78	126.78
Merged-chr1-36264373-3	chr1	36263896	36264896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153408)	TTS (NM_153408)	9029.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	86.95	76.49	40.7	75.57	53.65	69.93	71.82	76.49	66.2
Merged-chr12-111164637-3	chr12	111164139	111165139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1731.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	38.33	37.78	5.55	48.58	22.86	11.25	21.12	16.36	12.49
Merged-chr4-124709999-3	chr4	124709504	124710504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	123.56	146.07	151.69	135.62	90.04	171.21	158.43	156.97	132.4
Merged-chr4-62322865-3	chr4	62322359	62323359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 17 of 27)	ORR1E|LTR|ERVL-MaLR	31312.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	32.04	35.02	33.3	33.74	25.19	42.6	20.07	22.99	15.61
Merged-chr10-62947032-3	chr10	62946525	62947525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152862)	promoter-TSS (NR_152862)	-4.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	10.87	9.68	9.25	14.17	9.8	13.66	17.96	12.38	7.49
Merged-chr10-118868596-3	chr10	118868099	118869099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 1 of 2)	CpG-1533	304.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	451.92	353.42	402.35	510.09	335.89	324.73	475.28	377.61	311.64
Merged-chr8-47680512-3	chr8	47680005	47681005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5346.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	86.38	105.52	29.6	100.53	67.64	36.17	49.64	57.92	32.48
Merged-chr14-67859688-3	chr14	67859175	67860175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	70.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	118.42	140.54	92.5	145.06	115.23	172.01	62.31	85.78	63.08
Merged-chr10-82629803-3	chr10	82629322	82630322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-16.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	247.13	192.15	166.49	224.68	136.69	150.31	288.34	187.48	119.91
Merged-chr6-83652864-1	chr6	83652364	83653364	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 4 of 7)	exon (NM_016751, exon 4 of 7)	3252.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	93.82	131.78	81.4	133.59	164.21	145.49	163.71	141.94	51.21
Merged-chr10-7835234-3	chr10	7834731	7835731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1150.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	218.52	226.71	175.74	223.33	214.13	180.05	204.9	306.86	154.26
Merged-chr1-45795500-3	chr1	45795009	45796009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028599, exon 1 of 21)	5' UTR (NM_028599, exon 1 of 21)	343.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	157.89	146.53	127.64	147.09	118.49	110.12	153.15	159.62	78.07
Merged-chr2-120632197-3	chr2	120631698	120632698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22603.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	91.53	67.74	53.65	105.26	59.71	70.73	88.72	111.43	49.96
Merged-chr1-173420528-3	chr1	173420031	173421031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-73.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	124.14	171.41	115.62	127.52	122.23	105.3	148.92	181.73	87.43
Merged-chr2-26933522-3	chr2	26933052	26934052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011512)	promoter-TSS (NM_011512)	-41.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	372.98	304.12	244.19	343.43	257.51	243.55	275.66	233.91	170.5
Merged-chr13-92241602-3	chr13	92241117	92242117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010829, intron 19 of 23)	intron (NM_010829, intron 19 of 23)	-113166.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.58	9.68	5.55	13.49	11.2	3.22	6.34	6.63	11.24
Merged-chr17-6006321-3	chr17	6005831	6006831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 6 of 24)	intron (NM_001357667, intron 6 of 24)	-1249.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	37.76	25.8	19.42	43.18	30.32	21.7	22.18	21.67	8.74
Merged-chr12-86046309-3	chr12	86045804	86046804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	L1MB3|LINE|L1	32737.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	45.19	69.58	30.52	86.36	79.77	52.25	86.61	96.83	61.83
Merged-chr19-45783672-3	chr19	45783186	45784186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151594)	promoter-TSS (NR_151594)	-133.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	135.58	111.51	134.12	131.57	94.7	101.28	138.36	106.56	85.56
Merged-chr17-22867239-3	chr17	22866747	22867747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110254)	promoter-TSS (NM_001110254)	-113.0	NM_001110254	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	45.19	71.88	91.57	56.68	71.84	48.23	64.43	104.79	52.46
Merged-chr11-49076508-3	chr11	49076011	49077011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-76.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	131.57	111.05	101.74	109.98	81.17	70.73	145.75	120.27	103.05
Merged-chr5-27791624-3	chr5	27791108	27792108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-58.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	181.34	144.23	159.09	205.79	155.35	167.19	285.17	201.19	132.4
Merged-chr11-46817910-3	chr11	46817417	46818417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 3 of 8)	intron (NM_178759, intron 3 of 8)	7118.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	132.14	81.1	56.42	153.16	71.38	82.79	179.55	141.49	49.96
Merged-chr9-55938169-3	chr9	55937669	55938669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-50.0	NM_001081341	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	35.47	26.26	18.5	47.23	35.45	51.44	54.92	22.55	21.23
Merged-chr6-129495084-3	chr6	129494551	129495551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138648, intron 4 of 7)	MT2A|LTR|ERVL	12114.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	15.45	16.59	9.25	24.29	7.93	1.61	17.96	11.5	8.74
Merged-chr14-31930624-3	chr14	31930145	31931145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-98458.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	9.72	4.61	1.85	6.75	6.53	5.63	8.45	10.17	6.25
Merged-chrM-13524-1	chrM	13024	14024	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											225.96	216.11	17.57	138.99	46.65	33.76	141.53	47.75	49.34
Merged-chr1-183299338-3	chr1	183298834	183299834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2041.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	149.31	176.94	169.27	227.38	331.22	316.69	114.07	122.92	206.09
Merged-chr5-150600986-3	chr5	150600495	150601495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6470.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	155.03	145.61	111.92	149.11	108.23	106.9	95.06	112.75	73.07
Merged-chr8-119575190-3	chr8	119574706	119575706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	-6.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	89.81	57.14	35.15	110.65	94.7	90.02	107.73	49.08	35.6
Merged-chr11-74829980-3	chr11	74829439	74830439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-985.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	405.59	264.03	231.24	360.97	229.99	178.44	264.05	314.38	171.12
Merged-chr7-140857357-3	chr7	140856863	140857863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-34.0	NM_053194	101489.0	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	146.45	101.83	128.57	144.39	103.56	150.31	142.59	123.81	106.79
Merged-chr1-172482414-1	chr1	172481914	172482914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_033608)	promoter-TSS (NM_033608)	97.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	13.16	3.69	6.47	12.82	2.8	4.02	8.45	5.75	4.37
Merged-chr4-135272929-3	chr4	135272425	135273425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013885)	promoter-TSS (NM_013885)	-165.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	252.28	180.63	181.29	209.16	160.48	143.07	139.42	163.16	88.06
Merged-chr2-27427101-3	chr2	27426577	27427577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	531.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	52.06	35.48	37.0	71.52	41.05	47.42	50.7	35.37	27.48
Merged-chr4-108619966-3	chr4	108619461	108620461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177045)	promoter-TSS (NM_177045)	5.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	131.0	126.72	123.94	142.37	170.74	162.37	117.24	130.44	79.32
Merged-chr16-18343956-3	chr16	18343413	18344413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138583)	promoter-TSS (NM_138583)	-3.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	34.9	30.41	29.6	45.88	29.86	45.82	35.91	19.01	30.6
Merged-chr10-40093694-3	chr10	40093202	40094202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	48552.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	84.09	109.67	110.07	108.63	104.5	130.21	109.84	111.43	74.32
Merged-chr13-47105215-3	chr13	47104718	47105718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025900, intron 2 of 10)	intron (NM_025900, intron 2 of 10)	1003.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	140.15	160.35	117.47	143.04	151.15	157.54	144.7	166.7	124.28
Merged-chr2-122148731-3	chr2	122148236	122149236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	1049.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	284.31	303.2	160.02	230.75	211.33	122.18	293.62	353.29	154.26
Merged-chr2-37443246-3	chr2	37442686	37443686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146121)	promoter-TSS (NM_146121)	-65.0	NM_199025	320633.0	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	216.81	193.53	138.74	155.86	160.01	179.24	166.88	160.51	73.07
Merged-chr8-126884353-2	chr8	126883860	126884860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35340.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	11.44	11.98	11.1	29.01	25.66	9.65	38.02	54.39	21.86
Merged-chr13-34709155-3	chr13	34708652	34709652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30490.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	61.21	45.62	17.57	70.17	64.84	45.01	30.63	29.63	21.23
Merged-chr10-41573358-3	chr10	41572855	41573855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	5339.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	53.2	39.17	20.35	41.83	14.46	28.13	51.75	68.09	28.1
Merged-chr2-167351622-3	chr2	167351139	167352139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2461.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	141.3	90.31	49.95	147.76	100.77	90.02	155.26	154.32	49.34
Merged-chr2-126477782-3	chr2	126477282	126478282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13771.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	49.2	63.13	39.77	101.88	76.04	68.32	39.08	37.58	21.86
Merged-chr2-24975146-3	chr2	24974646	24975646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-48.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	264.29	223.48	157.24	269.89	216.93	234.71	245.04	293.6	109.92
Merged-chr6-90463650-3	chr6	90463157	90464157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355668, intron 1 of 2)	CpG	1081.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	60.07	28.11	15.72	35.09	27.99	9.65	30.63	15.48	5.0
Merged-chr8-94917611-3	chr8	94917118	94918118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033533, intron 1 of 8)	CpG	480.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	33.75	23.04	43.47	22.27	21.46	24.92	48.58	35.37	23.11
Merged-chr15-4816987-3	chr15	4816477	4817477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81760.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	112.12	132.71	115.62	109.98	108.23	121.37	126.74	137.51	95.55
Merged-chr2-49424977-3	chr2	49424459	49425459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26527.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	40.62	30.87	36.07	23.62	14.93	36.97	36.97	19.46	43.09
Merged-chr11-117849191-3	chr11	117848706	117849706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-31.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	78.37	79.25	84.17	93.11	84.9	122.18	100.34	121.15	64.95
Merged-chr14-54554443-3	chr14	54553928	54554928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145462)	promoter-TSS (NM_145462)	-67.0	NM_145462	219072.0	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	84.66	56.22	75.85	93.11	80.24	100.47	114.07	104.79	82.44
Merged-chr4-133673235-3	chr4	133672745	133673745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	-79.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	211.09	213.34	199.79	178.13	155.81	225.06	154.2	217.99	108.67
Merged-chr12-108178825-1	chr12	108178325	108179325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009832)	promoter-TSS (NM_009832)	459.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	125.28	95.84	134.12	157.21	111.03	128.61	123.57	104.79	80.56
Merged-chr13-55016686-3	chr13	55016191	55017191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206392, intron 1 of 17)	intron (NM_001206392, intron 1 of 17)	4128.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	76.66	75.57	61.05	43.18	55.05	42.6	98.23	96.83	76.19
Merged-chr5-99251526-3	chr5	99251022	99252022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1405.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	344.95	355.73	232.16	370.42	390.47	315.09	368.61	493.46	195.48
Merged-chr13-89383885-3	chr13	89383366	89384366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-156770.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	266.58	254.81	76.77	113.35	108.23	50.64	279.89	329.86	129.9
Merged-chr4-98202442-3	chr4	98201931	98202931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	180834.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	9.72	4.61	1.85	8.1	4.2	4.82	3.17	7.07	7.49
Merged-chr14-122107551-1	chr14	122107051	122108051	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	469.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	376.98	437.74	267.31	325.89	382.07	241.14	299.96	335.16	207.97
Merged-chr11-113853634-1	chr11	113853134	113854134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172800, intron 16 of 44)	intron (NM_172800, intron 16 of 44)	-101819.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	33.75	56.68	40.7	0.0	0.0	2.41	1.06	1.33	2.5
Merged-chr10-127597498-3	chr10	127597006	127598006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	23642.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	391.28	270.02	299.68	368.4	222.99	290.17	289.39	328.53	234.82
Merged-chr4-133118296-3	chr4	133117801	133118801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12332.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	74.94	35.94	61.05	66.12	22.86	36.97	82.38	45.1	68.7
Merged-chr3-100176224-3	chr3	100175724	100176724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104341, intron 3 of 13)	intron (NR_104341, intron 3 of 13)	13761.0	NR_104341	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	21.74	22.12	21.27	19.57	20.99	36.97	22.18	28.74	23.11
Merged-chr3-95230482-3	chr3	95229977	95230977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1534.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	192.78	186.16	124.87	149.11	133.89	158.35	207.01	235.23	133.65
Merged-chr12-69680954-3	chr12	69680467	69681467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135559, intron 1 of 22)	intron (NM_001135559, intron 1 of 22)	885.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	92.67	111.05	95.27	120.1	111.5	84.4	86.61	71.19	79.32
Merged-chr1-182983145-3	chr1	182982653	182983653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28365.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.43	4.61	0.0	3.37	4.2	0.0	5.28	1.77	4.37
Merged-chr3-27218805-3	chr3	27218294	27219294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	35790.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	56.06	52.07	65.67	74.89	56.45	53.05	74.99	57.04	44.97
Merged-chr17-57347125-3	chr17	57346605	57347605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11581.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	189.35	109.67	95.27	133.59	78.84	87.61	127.8	141.94	78.07
Merged-chr5-115490043-3	chr5	115489645	115490645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5661.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	487.39	514.7	225.69	509.41	454.85	262.84	371.78	452.78	186.11
Merged-chr7-92698854-3	chr7	92698355	92699355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28943.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	14.87	12.9	7.4	14.84	11.66	14.47	14.79	11.05	14.99
Merged-chr2-164858311-3	chr2	164857817	164858817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011125)	promoter-TSS (NM_011125)	-609.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	106.97	113.35	88.8	114.03	83.04	122.18	86.61	137.51	62.45
Merged-chr5-115349065-3	chr5	115348559	115349559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007748)	promoter-TSS (NM_007748)	-104.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	94.96	72.8	83.25	56.68	45.72	65.91	69.71	38.03	59.95
Merged-chr1-74284309-1	chr1	74283809	74284809	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	429.0	NM_001190444	227290.0	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	144.73	110.13	83.25	119.43	65.31	77.97	120.41	100.81	53.08
Merged-chr9-99382710-3	chr9	99382202	99383202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24172.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	27.46	34.1	24.97	42.51	16.79	22.51	20.07	13.71	8.74
Merged-chr15-99295129-3	chr15	99294641	99295641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018786)	promoter-TSS (NM_018786)	-100.0	NM_018786	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	48.05	13.36	31.45	40.48	20.06	24.92	26.4	16.36	14.36
Merged-chr16-91461900-3	chr16	91461387	91462387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3217.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	345.52	323.93	137.82	325.21	253.31	202.55	248.2	323.67	129.28
Merged-chrX-153498142-5	chrX	153497636	153498636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018798)	promoter-TSS (NM_018798)	-96.0	NM_018798	54609.0	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	96.11	74.65	49.95	118.08	98.9	88.42	80.27	75.17	44.97
Merged-chr5-150216254-2	chr5	150215753	150216753	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43677.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	3.43	2.76	5.55	6.75	5.13	0.0	11.62	7.07	10.62
Merged-chr15-101266813-3	chr15	101266276	101267276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-70.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	204.22	134.09	72.15	202.42	141.82	160.76	192.23	178.19	81.81
Merged-chr11-3163850-2	chr11	3163349	3164349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	RLTR51B_Mm|LTR|ERVK?	29614.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	62.93	82.94	112.84	83.66	107.76	154.33	2.11	2.21	136.15
Merged-chr6-124741547-2	chr6	124741052	124742052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-473.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	200.79	224.4	147.99	212.54	174.94	162.37	195.39	252.04	100.55
Merged-chr9-118150163-3	chr9	118149658	118150658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026442)	promoter-TSS (NM_026442)	38.0	NM_026442	67899.0	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	46.34	54.83	32.37	66.12	79.31	59.48	69.71	74.73	34.35
Merged-chr5-35575092-3	chr5	35574611	35575611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	-41.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	131.57	185.24	150.77	135.62	130.62	171.21	191.17	159.18	115.54
Merged-chr7-25385894-3	chr7	25385392	25386392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_073028)	TTS (NR_073028)	4220.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	110.98	94.92	89.72	72.19	64.84	113.33	79.21	76.94	74.32
Merged-chr9-118666241-3	chr9	118665747	118666747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-45445.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	235.11	173.25	168.34	265.84	163.28	197.73	242.92	232.14	112.42
Merged-chr9-20888226-3	chr9	20887732	20888732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145610)	promoter-TSS (NM_145610)	57.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	260.86	250.21	195.17	238.18	279.44	203.36	298.9	347.99	141.77
Merged-chr6-114894667-3	chr6	114894165	114895165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27156.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	269.44	322.55	191.47	285.41	277.11	212.2	284.11	302.0	129.28
Merged-chr15-79670827-3	chr15	79670332	79671332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172609)	promoter-TSS (NM_172609)	-36.0	NM_172609	223696.0	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22	protein-coding	66.36	64.97	67.52	63.42	53.18	55.46	80.27	38.47	33.1
Merged-chr7-5083469-3	chr7	5082973	5083973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010147, intron 2 of 11)	intron (NM_010147, intron 2 of 11)	3238.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	56.63	73.26	74.92	73.54	65.31	94.85	102.45	65.88	62.45
Merged-chr10-30676581-3	chr10	30676085	30677085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-20718.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	100.68	111.97	82.32	100.53	65.31	72.34	125.69	127.34	88.68
Merged-chr7-19276988-3	chr7	19276477	19277477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177691, exon 5 of 5)	3' UTR (NM_177691, exon 5 of 5)	3072.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	58.92	39.17	65.67	42.51	14.93	29.74	48.58	57.92	31.23
Merged-chr3-106558434-3	chr3	106557928	106558928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-10626.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	74.37	64.05	38.85	70.85	39.19	51.44	106.67	71.19	80.56
Merged-chr12-55821110-3	chr12	55820594	55821594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019994, exon 1 of 41)	5' UTR (NM_019994, exon 1 of 41)	422.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	56.63	48.84	73.07	47.9	36.39	61.09	55.98	37.14	33.72
Merged-chr1-87326888-3	chr1	87326394	87327394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110212)	promoter-TSS (NM_001110212)	-104.0	NM_146112	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	179.05	129.48	121.17	145.74	132.02	98.87	123.57	95.07	65.58
Merged-chr4-141506558-3	chr4	141506059	141507059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	32038.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	125.85	82.48	71.22	141.02	92.84	60.28	137.3	100.37	62.45
Merged-chr7-143046500-3	chr7	143046001	143047001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-6249.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	59.49	43.31	32.37	32.39	27.52	45.01	35.91	32.28	42.47
Merged-chr9-53536805-3	chr9	53536333	53537333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	-162.0	NM_007499	11920.0	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	87.52	111.51	133.19	103.23	78.37	73.14	117.24	105.68	81.19
Merged-chr11-71230869-2	chr11	71230358	71231358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040696)	promoter-TSS (NM_001040696)	-125.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	64.07	78.79	63.82	0.0	0.0	0.0	55.98	54.39	40.59
Merged-chr1-60627620-3	chr1	60627114	60628114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60849.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	66.36	54.83	63.82	118.75	91.44	68.32	82.38	45.54	41.22
Merged-chr10-128704683-1	chr10	128704183	128705183	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183417, intron 1 of 7)	CpG	368.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	113.84	92.16	135.04	88.39	76.51	134.23	103.51	90.2	64.33
Merged-chr1-24469696-3	chr1	24469159	24470159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	117778.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	45.19	41.47	28.67	53.98	40.12	50.64	63.37	45.1	39.35
Merged-chr15-79229248-3	chr15	79228752	79229752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008837)	promoter-TSS (NM_008837)	79.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	82.38	57.6	64.75	62.07	54.58	65.11	74.99	79.15	54.33
Merged-chr14-50956140-1	chr14	50955640	50956640	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-1.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	58.09	50.85	23.73
Merged-chr1-34823564-3	chr1	34823073	34824073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 3 of 6)	intron (NM_001160236, intron 3 of 6)	19477.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	39.47	41.93	50.87	99.18	71.84	82.79	94.0	89.32	66.2
Merged-chrUn_JH584304-28051-1	chrUn_JH584304	27551	28551	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31638.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	148.92	110.1	0.0
Merged-chr2-25255399-3	chr2	25254845	25255845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	69.0	NM_001252541	78797.0	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	359.82	328.54	241.41	213.89	201.53	183.26	254.54	213.57	134.9
Merged-chr7-83884377-3	chr7	83883860	83884860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030705)	promoter-TSS (NM_030705)	-19.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	226.53	240.07	283.96	226.03	191.27	204.97	222.86	197.21	184.24
Merged-chr8-70806705-3	chr8	70806166	70807166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1783.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	61.21	41.01	65.67	48.58	44.78	66.71	51.75	57.92	52.46
Merged-chr9-99568945-3	chr9	99568462	99569462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166138)	promoter-TSS (NM_001166138)	-63.0	NM_028768	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	97.82	97.69	95.27	106.61	103.1	127.0	129.91	128.23	63.7
Merged-chr9-20644833-3	chr9	20644327	20645327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	24.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	401.01	471.38	360.73	331.29	327.49	283.74	324.25	379.82	237.95
Merged-chr8-122281497-3	chr8	122281000	122282000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-641.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	64.64	50.23	66.6	51.95	44.78	44.21	143.64	96.39	44.97
Merged-chr11-4895343-3	chr11	4894830	4895830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	-13.0	NM_172438	107829.0	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	28.6	27.19	29.6	39.13	42.45	45.01	53.87	48.2	36.22
Merged-chr1-182923049-3	chr1	182922551	182923551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31737.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	27.46	17.97	13.87	25.64	8.4	12.06	12.67	10.17	8.12
Merged-chr17-43038904-3	chr17	43038407	43039407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 2 of 5)	intron (NM_178589, intron 2 of 5)	22352.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	244.27	263.57	121.17	226.03	215.53	147.09	195.39	282.99	85.56
Merged-chr2-101175307-3	chr2	101174814	101175814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-449434.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	9.15	6.91	5.55	15.52	12.6	16.88	6.34	14.15	1.87
Merged-chr8-46686905-3	chr8	46686413	46687413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M6|LINE|L1	52602.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	75.51	132.25	100.82	78.94	131.09	114.94	130.97	140.17	69.95
Merged-chr17-31021048-3	chr17	31020534	31021534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36660.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	97.82	69.58	32.37	138.32	95.63	98.06	90.83	65.0	31.23
Merged-chr13-37600381-3	chr13	37599878	37600878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-225660.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	135.58	95.84	61.97	132.24	102.63	104.49	149.98	132.65	69.32
Merged-chr4-86669468-3	chr4	86668972	86669972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	587.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	228.82	207.81	181.29	232.1	222.99	186.48	268.27	333.39	148.64
Merged-chr7-16053352-3	chr7	16052844	16053844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18501.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	61.21	68.2	55.5	59.38	50.38	77.97	65.48	83.13	43.09
Merged-chr11-3140024-2	chr11	3139546	3140546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	16025.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	30.89	62.67	53.65	49.25	78.37	90.02	3.17	2.65	87.43
Merged-chr9-108692056-3	chr9	108691550	108692550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-93.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	301.47	356.65	240.49	253.69	278.51	239.53	214.41	314.38	158.01
Merged-chr13-113509555-3	chr13	113509069	113510069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6725.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	135.58	94.92	31.45	145.74	80.71	52.25	81.33	102.58	33.1
Merged-chr2-79257131-3	chr2	79256638	79257638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	1712.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	101.25	124.41	74.0	91.09	83.97	82.79	91.89	102.58	61.83
Merged-chr4-124751519-3	chr4	124751033	124752033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-179.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	62.35	47.92	58.27	42.51	37.79	61.89	54.92	34.49	34.97
Merged-chr17-5591791-3	chr17	5591292	5592292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	99192.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	181.34	139.16	70.3	192.97	119.43	103.69	181.66	173.33	84.94
Merged-chr17-74489510-3	chr17	74489014	74490014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026417)	promoter-TSS (NM_026417)	21.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	144.16	140.54	113.77	167.33	132.49	110.92	178.5	111.43	55.58
Merged-chr17-85090181-2	chr17	85089668	85090668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145984)	promoter-TSS (NM_145984)	99.0	NM_145984	213760.0	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	102.97	107.36	86.02	91.09	90.5	88.42	91.89	90.2	37.47
Merged-chr15-88128609-2	chr15	88128121	88129121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	110.41	118.88	84.17	164.63	159.08	117.35	0.0	2.21	3.75
Merged-chr9-105395386-3	chr9	105394897	105395897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172461)	promoter-TSS (NM_172461)	35.0	NR_152139	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	171.04	277.85	135.04	178.13	214.59	129.41	171.1	219.31	86.81
Merged-chr17-35135819-2	chr17	35135311	35136311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252469)	promoter-TSS (NM_001252469)	97.0	NM_001252469	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	359.82	282.92	237.71	373.12	265.91	221.85	320.02	344.45	181.11
Merged-chr3-21995794-1	chr3	21995294	21996294	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80858.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.29	7.37	10.17	14.17	6.53	9.65	8.45	10.17	6.25
Merged-chr16-13671910-3	chr16	13671414	13672414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	56.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	429.61	567.69	344.08	417.65	534.15	359.29	444.65	557.57	244.19
Merged-chr19-21274330-3	chr19	21273822	21274822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2044.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	219.67	230.39	82.32	346.13	282.24	156.74	209.12	249.38	143.64
Merged-chr17-35236486-3	chr17	35235983	35236983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-113.0	NM_023179	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	75.51	46.54	52.72	86.36	30.79	57.87	119.35	82.24	63.7
Merged-chr17-45598032-3	chr17	45597525	45598525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	1578.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	61.78	32.25	26.82	58.03	19.59	36.17	54.92	31.39	34.35
Merged-chr19-37157152-3	chr19	37156660	37157660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	intron (NM_198300, intron 2 of 10)	-16683.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	120.13	88.01	52.72	118.75	58.31	81.18	135.19	146.36	63.7
Merged-chr14-52257883-3	chr14	52257361	52258361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20289.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	136.72	131.78	154.47	123.47	116.63	183.26	142.59	147.24	113.04
Merged-chr17-8311065-3	chr17	8310565	8311565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134114)	promoter-TSS (NM_134114)	-23.0	NM_001357890	106489.0	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	212.8	292.6	293.21	234.8	306.03	303.03	232.36	325.88	175.49
Merged-chr9-103230888-2	chr9	103230387	103231387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-601.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	88.67	84.78	104.52	99.86	85.37	107.71	87.66	66.77	57.46
Merged-chr8-84202631-3	chr8	84202102	84203102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5916.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	358.11	392.59	244.19	396.06	329.35	259.62	298.9	330.74	194.85
Merged-chr4-134619273-3	chr4	134618764	134619764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-51413.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	120.7	95.38	45.32	124.82	106.36	72.34	74.99	90.2	37.47
Merged-chr14-27038955-3	chr14	27038446	27039446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134437)	promoter-TSS (NM_134437)	-55.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	2.29	1.84	3.7	6.07	3.27	4.82	4.22	0.88	6.25
Merged-chr9-20385150-3	chr9	20384641	20385641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	17.0	NM_001004190	434377.0	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	24.6	38.71	24.97	26.99	21.46	21.7	27.46	24.76	23.11
Merged-chr6-147476379-3	chr6	147475890	147476890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	25.0	NM_001355713	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	201.93	175.1	137.82	243.57	236.05	188.89	133.08	131.77	63.7
Merged-chr16-55838842-3	chr16	55838371	55839371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-230.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	448.49	454.33	222.91	381.89	380.67	282.13	345.37	389.55	158.01
Merged-chr17-57060457-3	chr17	57059974	57060974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025877)	promoter-TSS (NM_025877)	-611.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	33.75	36.4	17.57	53.98	25.66	25.72	32.74	22.99	27.48
Merged-chr1-106714384-3	chr1	106713891	106714891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177410)	promoter-TSS (NM_177410)	-101.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	69.22	40.55	33.3	62.75	32.66	28.94	44.36	28.3	17.49
Merged-chr4-142023388-3	chr4	142022881	142023881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	5483.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	40.04	41.01	49.02	35.76	26.59	69.13	48.58	67.65	40.59
Merged-chr5-64230310-3	chr5	64229814	64230814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289514)	promoter-TSS (NM_001289514)	-43.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	303.76	233.62	178.52	358.28	273.84	223.45	279.89	288.74	146.76
Merged-chr19-47090755-3	chr19	47090250	47091250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	-16.0	NM_011053	18572.0	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	351.24	357.11	205.34	375.82	376.94	224.26	315.8	398.39	170.5
Merged-chr4-135876092-3	chr4	135875603	135876603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2257.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	488.53	354.8	217.36	402.81	299.96	233.1	433.04	439.07	187.98
Merged-chr8-123102373-3	chr8	123101878	123102878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016738)	promoter-TSS (NM_016738)	28.0	NM_016738	270106.0	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	104.69	106.9	65.67	126.17	134.35	98.87	154.2	122.48	74.32
Merged-chr17-74338733-3	chr17	74338233	74339233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-254.0	NM_001357738	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	83.52	44.24	56.42	120.77	52.25	45.82	128.85	62.35	47.46
Merged-chr19-55469360-2	chr19	55468869	55469869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	153312.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	22.88	26.26	20.35	45.88	35.92	24.11	4.22	2.21	1.25
Merged-chr1-180762865-3	chr1	180762360	180763360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	36817.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	20.59	6.91	14.8	45.88	25.66	35.37	43.3	22.55	38.1
Merged-chr6-97210684-3	chr6	97210187	97211187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022992)	promoter-TSS (NM_022992)	-105.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	82.38	68.66	69.37	64.77	64.84	76.36	79.21	55.71	17.49
Merged-chr5-86066738-3	chr5	86066246	86067246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	70.36	73.73	54.57	54.65	65.31	51.44	76.05	102.58	37.47
Merged-chr10-79987166-3	chr10	79986692	79987692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	B3|SINE|B2	-1408.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	36.04	62.21	34.22	39.81	27.06	44.21	62.31	69.42	40.59
Merged-chr15-41615623-3	chr15	41615132	41616132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	L3|LINE|CR1	166529.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	10.87	13.36	8.32	12.82	9.8	8.04	15.84	3.54	6.25
Merged-chr14-69732676-3	chr14	69732154	69733154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134078)	promoter-TSS (NM_134078)	-84.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	124.14	161.27	118.39	109.3	149.28	104.49	130.97	132.21	76.82
Merged-chr1-182341634-3	chr1	182341136	182342136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175127)	promoter-TSS (NM_175127)	-30.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	146.45	114.27	98.97	155.86	68.58	90.02	114.07	60.13	68.7
Merged-chr17-5800500-4	chr17	5799961	5800961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045080, intron 1 of 1)	intron (NR_045080, intron 1 of 1)	971.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	86.38	62.67	56.42	62.07	52.25	61.89	92.94	66.33	46.84
Merged-chr14-70153637-5	chr14	70153107	70154107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001004155)	TTS (NM_001004155)	184.0	NM_146055	219158.0	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	34.32	30.41	40.7	42.51	27.99	54.66	31.69	34.93	29.35
Merged-chr15-73724700-3	chr15	73724208	73725208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166388)	promoter-TSS (NM_001166388)	-89.0	NM_001357591	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	90.96	76.49	92.5	117.4	105.9	99.67	139.42	120.71	79.32
Merged-chr14-73433668-3	chr14	73433171	73434171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48382.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	135.58	137.31	66.6	98.51	83.51	94.85	109.84	106.12	88.68
Merged-chr1-152766565-3	chr1	152766068	152767068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346119)	promoter-TSS (NM_001346119)	26.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	204.8	166.8	167.42	186.22	148.82	177.64	192.23	139.72	113.66
Merged-chr18-82847169-3	chr18	82846681	82847681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8716.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	39.47	29.95	24.05	29.69	18.66	34.56	16.9	28.3	14.99
Merged-chr5-149006891-3	chr5	149006394	149007394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-68.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	36.61	16.13	15.72	47.23	31.26	26.53	34.85	19.46	13.74
Merged-chr5-112344295-3	chr5	112343788	112344788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359853, exon 2 of 14)	5' UTR (NM_001359853, exon 2 of 14)	1193.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	68.65	66.35	29.6	40.48	38.72	14.47	51.75	59.25	28.73
Merged-chr15-76659830-3	chr15	76659332	76660332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	-26.0	NM_001358910	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	144.16	117.04	98.05	126.17	117.09	115.75	138.36	145.03	53.08
Merged-chr11-97685838-3	chr11	97685336	97686336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-116.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	42.9	36.4	22.2	40.48	28.46	61.89	73.93	59.69	43.09
Merged-chr9-119568864-2	chr9	119568365	119569365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021544, intron 1 of 27)	intron (NM_021544, intron 1 of 27)	-6187.0	NM_001253860	20271.0	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	9.72	4.61	5.55	4.72	6.06	4.82	5.28	1.77	6.25
Merged-chr13-8871097-3	chr13	8870601	8871601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-57.0	NM_172445	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	161.89	158.51	172.04	153.16	182.87	196.12	211.24	205.61	96.18
Merged-chr15-31467031-3	chr15	31466536	31467536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-13347.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	37.76	59.9	35.15	40.48	53.18	48.23	61.26	66.33	46.22
Merged-chr1-97770430-3	chr1	97769920	97770920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	248.0	NM_001310773	252876.0	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	60.64	83.4	70.3	66.12	86.3	115.75	98.23	119.39	58.71
Merged-chr3-67430095-3	chr3	67429600	67430600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138591)	promoter-TSS (NM_138591)	-15.0	NM_138591	28030.0	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	18.88	16.59	11.1	27.66	31.72	20.9	24.29	13.27	8.12
Merged-chr11-34833662-3	chr11	34833182	34834182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027411)	promoter-TSS (NM_027411)	-41.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	68.07	81.56	54.57	68.82	65.78	62.7	80.27	60.58	48.71
Merged-chr18-70530307-3	chr18	70529812	70530812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	9.0	NM_001136090	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	145.87	194.91	133.19	129.55	167.01	86.81	226.02	286.08	81.81
Merged-chr5-95919553-3	chr5	95919035	95920035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-37404.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	18.88	37.78	28.67	29.01	30.32	38.58	12.67	13.27	21.86
Merged-chr7-127027401-3	chr7	127026900	127027900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-921.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	188.78	120.26	105.44	171.38	91.9	108.51	176.38	160.06	83.69
Merged-chr5-142459299-3	chr5	142458801	142459801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-4630.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	113.84	163.58	184.99	114.7	121.76	151.92	159.48	204.28	117.41
Merged-chr8-85026783-3	chr8	85026228	85027228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026760)	promoter-TSS (NM_026760)	-105.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	277.45	277.85	147.99	258.42	284.1	164.78	236.59	211.8	160.5
Merged-chr8-70753312-3	chr8	70752809	70753809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1370.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	180.2	160.81	118.39	218.61	222.99	223.45	192.23	266.63	139.89
Merged-chr11-69671401-3	chr11	69670885	69671885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159375, intron 1 of 10)	CpG	1038.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	396.43	299.97	219.21	368.4	286.44	209.79	274.61	316.15	168.62
Merged-chr16-91372963-5	chr16	91372486	91373486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110498, exon 1 of 7)	5' UTR (NM_001110498, exon 1 of 7)	203.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	345.52	267.25	288.59	339.38	264.51	314.28	328.47	307.31	184.24
Merged-chr5-136171707-3	chr5	136171204	136172204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	294.61	323.93	173.89	251.67	267.78	208.18	250.32	282.1	151.76
Merged-chr10-117302005-3	chr10	117301471	117302471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9103.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	72.65	65.89	46.25	51.28	34.99	33.76	46.47	32.72	32.48
Merged-chr13-5863749-3	chr13	5863223	5864223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	2234.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	328.36	362.18	144.29	255.04	232.32	135.84	268.27	272.82	159.25
Merged-chr10-12964444-3	chr10	12963884	12964884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029075)	promoter-TSS (NM_029075)	-125.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	69.79	70.5	63.82	69.5	61.11	67.52	86.61	68.98	48.71
Merged-chr4-155812387-3	chr4	155811881	155812881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207678)	promoter-TSS (NM_207678)	-108.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	292.89	289.83	251.59	252.34	267.31	218.63	243.98	294.48	185.48
Merged-chr12-105032500-3	chr12	105031996	105032996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003145)	promoter-TSS (NR_003145)	-122.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	159.03	158.97	102.67	134.27	130.16	99.67	135.19	101.7	70.57
Merged-chr2-84727374-3	chr2	84726875	84727875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133840)	promoter-TSS (NM_133840)	-107.0	NM_133840	98985.0	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	183.63	155.28	108.22	176.78	140.89	123.78	144.7	167.14	73.07
Merged-chr9-123929040-4	chr9	123928543	123929543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39649.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	242.55	204.59	150.77	217.93	173.07	151.11	243.98	248.06	105.55
Merged-chr1-180404449-3	chr1	180403936	180404936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73887.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	390.71	317.94	283.04	417.65	365.28	299.81	286.23	371.42	161.13
Merged-chr6-57812556-3	chr6	57812058	57813058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	12567.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	18.31	17.05	9.25	18.22	12.6	15.27	8.45	11.5	9.37
Merged-chr1-45864696-3	chr1	45864186	45865186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60908.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	121.85	124.87	82.32	147.76	102.63	105.3	137.3	161.83	84.94
Merged-chr3-104638592-3	chr3	104638072	104639072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-92.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	158.46	93.08	76.77	195.67	161.88	86.81	48.58	34.49	17.49
Merged-chr13-41466845-3	chr13	41466350	41467350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20510.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	228.25	211.5	129.49	194.99	172.61	226.67	178.5	212.24	104.92
Merged-chrX-14739179-3	chrX	14738689	14739689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	372300.0	NR_033171	67395.0	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	1.72	0.92	1.85	0.67	3.73	3.22	2.11	2.65	4.37
Merged-chr2-75792899-2	chr2	75792394	75793394	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39283.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	62.35	44.24	58.27	68.82	50.85	52.25	83.44	77.82	65.58
Merged-chr8-125568502-3	chr8	125568007	125569007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	1356.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	93.82	96.3	30.52	121.45	79.31	73.14	86.61	93.74	58.71
Merged-chr1-43092498-5	chr1	43092003	43093003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357299)	promoter-TSS (NM_001357299)	-17.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	141.87	149.29	159.09	148.44	138.55	149.5	133.08	125.13	97.43
Merged-chr3-88296973-3	chr3	88296466	88297466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009836)	promoter-TSS (NM_009836)	33.0	NM_001357024	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	167.61	152.52	103.59	177.45	122.69	142.27	149.98	161.39	93.05
Merged-chr3-88536752-3	chr3	88536253	88537253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035434)	promoter-TSS (NR_035434)	-371.0	NR_035434	100316808.0		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	29.17	18.89	17.57	33.74	24.26	36.17	28.52	21.22	13.74
Merged-chr1-166339309-3	chr1	166338799	166339799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39868.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	21.17	27.19	31.45	30.36	23.33	23.31	34.85	23.43	25.61
Merged-chr9-32472523-3	chr9	32472026	32473026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	Lx8|LINE|L1	68926.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	39.47	32.72	31.45	43.86	27.99	48.23	31.69	20.78	28.73
Merged-chr8-34945323-3	chr8	34944827	34945827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	MTD|LTR|ERVL-MaLR	20363.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	9.72	5.53	1.85	3.37	4.2	4.82	5.28	3.54	1.25
Merged-chr11-22814146-3	chr11	22813657	22814657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45578.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	94.96	120.26	81.4	106.61	91.9	73.95	130.97	122.04	74.32
Merged-chr1-125473419-3	chr1	125472918	125473918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37691.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	45.19	52.07	48.1	96.48	59.25	61.89	83.44	100.37	69.95
Merged-chr14-31569342-3	chr14	31568851	31569851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	8032.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	24.03	24.88	12.95	22.94	12.6	4.82	20.07	34.05	15.61
Merged-chrX-20848439-3	chrX	20847939	20848939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009703)	promoter-TSS (NM_009703)	-104.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	49.77	55.29	35.15	60.05	43.85	45.82	45.42	55.27	43.72
Merged-chr7-81856398-3	chr7	81855906	81856906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-2595.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	91.53	79.25	76.77	81.64	75.57	73.14	77.1	85.78	53.08
Merged-chr6-56902012-3	chr6	56901520	56902520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252374)	promoter-TSS (NM_001252374)	-134.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	135.58	190.3	73.07	161.93	195.47	79.58	166.88	240.1	84.31
Merged-chr7-141540851-3	chr7	141540327	141541327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-970.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	50.91	58.52	68.45	63.42	57.38	94.04	83.44	70.75	59.33
Merged-chr13-12408863-3	chr13	12408360	12409360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 13 of 44)	intron (NM_144835, intron 13 of 44)	13485.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	120.13	139.62	76.77	134.27	114.29	94.85	127.8	141.94	73.69
Merged-chr3-104511966-3	chr3	104511460	104512460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310698)	promoter-TSS (NM_001310698)	-42.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	163.04	191.23	191.47	132.24	144.15	147.9	155.26	131.77	101.8
Merged-chr17-56075066-3	chr17	56074555	56075555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024432, exon 2 of 12)	5' UTR (NM_024432, exon 2 of 12)	4278.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	192.21	164.96	184.07	197.69	159.08	146.29	182.72	180.4	90.56
Merged-chr5-19891885-3	chr5	19891385	19892385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	L2a|LINE|L2	-15633.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	10.87	17.05	15.72	13.49	7.46	24.92	20.07	21.22	26.85
Merged-chr13-5870523-3	chr13	5870028	5871028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011803)	TTS (NM_011803)	9039.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	90.38	65.43	18.5	105.26	49.45	56.27	52.81	46.43	38.72
Merged-chr6-86579462-3	chr6	86578950	86579950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48724.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	56.06	30.41	14.8	52.63	24.72	27.33	58.09	35.37	31.85
Merged-chr7-43273692-3	chr7	43273194	43274194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	39606.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	33.75	27.19	32.37	19.57	29.86	38.58	25.35	16.36	23.73
Merged-chr9-56950872-3	chr9	56950362	56951362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178374)	promoter-TSS (NM_178374)	-62.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	236.26	227.17	128.57	179.47	173.07	159.95	213.35	177.75	108.04
Merged-chr14-59260282-3	chr14	59259762	59260762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164329)	promoter-TSS (NM_001164329)	-46.0	NM_001164329	628693.0	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	54.92	69.12	57.35	48.58	30.79	65.11	109.84	67.21	56.21
Merged-chr3-108200581-3	chr3	108200181	108201181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081320, exon 1 of 3)	exon (NM_001081320, exon 1 of 3)	153.0	NM_028061	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	96.11	85.25	101.74	105.26	76.97	120.57	122.52	102.58	83.06
Merged-chr9-54501940-3	chr9	54501431	54502431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172771)	promoter-TSS (NM_172771)	-305.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	99.54	71.88	52.72	141.69	74.17	68.32	71.82	45.99	41.84
Merged-chr2-165922548-3	chr2	165922023	165923023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37685.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	117.84	100.91	48.1	109.98	54.58	73.14	78.16	87.11	53.71
Merged-chr6-22359194-3	chr6	22358687	22359687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-3106.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	77.23	79.72	59.2	91.09	72.31	90.02	99.28	127.34	52.46
Merged-chr9-61368550-3	chr9	61368085	61369085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3781.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	13.73	14.75	15.72	11.47	10.26	8.04	17.96	10.17	9.99
Merged-chr15-102470417-3	chr15	102469914	102470914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001174073)	promoter-TSS (NM_001174073)	-218.0	NM_011042	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	95.53	87.55	71.22	87.71	72.31	75.56	87.66	79.59	63.08
Merged-chr6-35568983-3	chr6	35568486	35569486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29098.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	6.29	4.15	11.1	10.8	0.93	8.04	5.28	4.42	12.49
Merged-chr3-96500482-3	chr3	96499972	96500972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24713.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	61.78	100.45	56.42	72.87	45.72	57.87	173.21	182.62	106.79
Merged-chr10-85386709-1	chr10	85386209	85387209	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028709)	promoter-TSS (NM_028709)	-105.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.72	0.92	1.85	3.37	1.4	3.22	68.65	59.25	46.22
Merged-chr6-135947616-1	chr6	135947116	135948116	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	225895.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.43	2.76	1.85	5.4	2.33	1.61	4.22	4.86	0.0
Merged-chr7-73595400-3	chr7	73594903	73595903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37008.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	163.61	210.12	116.54	183.52	144.15	148.7	170.05	222.85	118.04
Merged-chr16-16983353-3	chr16	16982841	16983841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011949)	promoter-TSS (NM_011949)	-41.0	NM_001357115	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	199.65	185.24	113.77	232.78	192.67	127.8	194.34	116.29	93.05
Merged-chr7-27447819-3	chr7	27447333	27448333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144923)	promoter-TSS (NM_144923)	-145.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	85.24	76.95	68.45	104.58	65.78	73.95	86.61	108.77	38.72
Merged-chr10-96435330-3	chr10	96434815	96435815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181686.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	41.19	27.19	13.87	23.62	27.99	24.11	30.63	27.41	18.74
Merged-chr7-13054766-3	chr7	13054262	13055262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290453)	promoter-TSS (NM_001290453)	2.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	14.3	17.51	24.05	14.17	9.33	16.08	16.9	19.46	21.86
Merged-chr12-79642068-3	chr12	79641575	79642575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	282658.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	129.28	142.84	95.27	123.47	91.44	109.32	90.83	122.48	66.2
Merged-chr16-87698913-3	chr16	87698417	87699417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-37.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	264.86	158.05	198.87	259.77	144.15	157.54	246.09	107.45	91.81
Merged-chr16-90187665-3	chr16	90187169	90188169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33073.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	14.87	12.9	9.25	8.77	5.13	8.04	10.56	3.98	10.62
Merged-chr6-120836177-3	chr6	120835670	120836670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153516)	promoter-TSS (NM_153516)	-60.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	426.75	418.85	295.06	364.35	437.58	259.62	389.73	392.2	191.73
Merged-chr17-57078523-3	chr17	57078043	57079043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153551)	promoter-TSS (NM_153551)	-33.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	284.31	230.85	162.79	232.78	191.27	171.21	242.92	254.69	140.52
Merged-chr10-60273586-3	chr10	60273087	60274087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4041.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	92.67	76.95	85.1	120.1	61.11	122.18	90.83	101.7	74.32
Merged-chr13-112413787-1	chr13	112413287	112414287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50283.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	7.44	6.45	7.4	11.47	7.46	4.82	9.51	8.84	3.75
Merged-chr18-4266200-3	chr18	4265717	4266717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86736.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	129.28	142.38	89.72	146.41	149.28	117.35	105.62	84.9	59.95
Merged-chr17-50470638-3	chr17	50470123	50471123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38924.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	316.92	399.04	289.51	242.22	306.03	225.06	311.57	439.07	215.46
Merged-chr4-32352134-3	chr4	32351637	32352637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-65298.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	38.33	24.88	9.25	75.57	46.65	40.99	12.67	11.5	6.87
Merged-chr7-55968682-3	chr7	55968175	55969175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	ORR1E-int|LTR|ERVL-MaLR	6144.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	89.81	133.63	91.57	112.68	78.84	125.39	120.41	147.68	91.81
Merged-chr5-110424359-3	chr5	110423852	110424852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	24151.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	18.88	20.74	14.8	12.14	10.73	16.08	26.4	19.46	16.24
Merged-chr5-135064139-3	chr5	135063630	135064630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025362)	promoter-TSS (NM_025362)	-76.0	NM_025362	66114.0	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	75.51	64.51	60.12	65.45	48.05	66.71	78.16	45.54	46.22
Merged-chr16-18248881-3	chr16	18248373	18249373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	-10.0	NM_001357146	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	218.52	176.48	218.29	156.53	174.47	204.97	167.93	155.2	114.29
Merged-chr7-122208547-3	chr7	122208061	122209061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10935.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	140.15	117.96	121.17	275.28	143.68	107.71	217.57	208.7	93.05
Merged-chr11-106669915-3	chr11	106669406	106670406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	45375.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	79.52	37.78	33.3	44.53	22.86	35.37	32.74	10.17	5.62
Merged-chr4-141656327-3	chr4	141655827	141656827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	7788.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	136.72	80.18	93.42	99.86	55.51	77.16	144.7	127.34	97.43
Merged-chr19-46499974-3	chr19	46499475	46500475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	118.42	73.73	130.42	85.01	62.98	90.02	115.12	104.79	77.44
Merged-chr10-34171907-3	chr10	34171403	34172403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	35648.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	113.27	134.55	98.05	110.65	79.31	102.08	98.23	84.9	84.31
Merged-chr4-150556542-3	chr4	150556044	150557044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95630.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	225.96	188.92	140.59	181.5	137.62	127.0	154.2	159.62	78.69
Merged-chr2-84382221-3	chr2	84381699	84382699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43067.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	27.46	40.55	7.4	37.78	55.51	11.25	20.07	15.48	11.87
Merged-chr2-160019121-3	chr2	160018604	160019604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	2451.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	130.43	135.47	86.95	147.76	77.44	146.29	121.46	124.25	71.2
Merged-chr8-111259249-3	chr8	111258766	111259766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009149)	promoter-TSS (NM_009149)	-64.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	371.26	392.13	295.99	369.75	364.34	286.15	346.43	327.65	202.35
Merged-chr10-54132835-3	chr10	54132331	54133331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56909.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	22.88	21.2	12.95	22.94	11.66	20.9	14.79	6.19	5.0
Merged-chr8-94634250-3	chr8	94633761	94634761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359093, intron 6 of 14)	intron (NM_001359093, intron 6 of 14)	32320.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	26.89	12.9	5.55	26.31	9.33	6.43	15.84	17.24	8.74
Merged-chr12-104131261-3	chr12	104130762	104131762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3266.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	10.3	5.53	3.7	11.47	6.06	8.04	16.9	7.07	6.25
Merged-chr7-116446878-3	chr7	116446380	116447380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3422.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	114.41	109.67	94.35	114.7	92.84	123.78	92.94	91.97	75.57
Merged-chr1-80758577-3	chr1	80758073	80759073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175291)	promoter-TSS (NM_175291)	-20.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	62.93	24.88	26.82	51.95	40.59	34.56	68.65	32.72	34.97
Merged-chr17-33843220-3	chr17	33842727	33843727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305169)	promoter-TSS (NM_001305169)	136.0	NM_019421	54219.0	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	10.3	21.66	20.35	33.74	29.39	45.82	22.18	39.8	19.98
Merged-chr8-71882008-3	chr8	71881487	71882487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145624)	promoter-TSS (NM_145624)	-81.0	NM_145624	236193.0	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	118.42	96.76	84.17	99.18	106.36	82.79	121.46	122.04	77.44
Merged-chr4-155839694-2	chr4	155839239	155840239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024263)	promoter-TSS (NM_024263)	59.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	51.48	44.24	25.9	56.0	48.52	48.23	1.06	4.42	4.37
Merged-chr1-45916462-1	chr1	45915962	45916962	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	9132.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	59.49	88.01	41.62	75.57	53.18	57.87	97.17	74.73	42.47
Merged-chr2-143915421-3	chr2	143914913	143915913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019771)	promoter-TSS (NM_019771)	82.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	83.52	73.26	80.47	85.69	81.17	52.25	74.99	75.17	43.09
Merged-chr6-108446324-3	chr6	108445799	108446799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-43444.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	148.73	99.53	98.05	170.03	136.69	120.57	119.35	110.1	35.6
Merged-chr15-27874085-3	chr15	27873592	27874592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	151756.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	10.3	19.35	22.2	26.31	15.39	26.53	29.57	13.27	14.99
Merged-chr18-61481860-3	chr18	61481355	61482355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	MLT1K|LTR|ERVL-MaLR	2752.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	49.2	32.25	40.7	63.42	34.52	37.78	77.1	73.84	30.6
Merged-chr18-65934982-3	chr18	65934476	65935476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013833, exon 3 of 3)	3' UTR (NM_013833, exon 3 of 3)	4113.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	12.59	7.37	11.1	8.1	2.33	6.43	7.39	2.65	11.24
Merged-chr9-32508881-3	chr9	32508386	32509386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32566.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	97.82	105.06	81.4	91.09	50.38	86.81	84.49	74.73	55.58
Merged-chr10-75935846-3	chr10	75935332	75936332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175329, exon 2 of 5)	5' UTR (NM_175329, exon 2 of 5)	2702.0	NM_175329	103172.0	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	10.3	7.37	7.4	23.62	15.86	20.9	12.67	8.4	2.5
Merged-chr2-174344327-3	chr2	174343841	174344841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14252.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	102.97	122.57	63.82	138.99	137.15	91.63	96.11	154.76	78.07
Merged-chr12-111814008-3	chr12	111813501	111814501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028875)	promoter-TSS (NM_028875)	-122.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	48.05	49.3	38.85	62.07	58.31	76.36	44.36	48.64	25.61
Merged-chr19-56566191-3	chr19	56565665	56566665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	17904.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	20.02	19.81	24.05	23.62	11.66	7.23	17.96	22.11	16.24
Merged-chr10-39412961-3	chr10	39412467	39413467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	43168.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	249.42	191.23	137.82	248.3	199.67	141.47	175.33	178.64	91.81
Merged-chr11-72301591-3	chr11	72301110	72302110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037713)	promoter-TSS (NM_001037713)	-19.0	NM_001291153	327959.0	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	61.21	55.29	87.87	74.89	57.38	48.23	86.61	93.74	49.34
Merged-chr14-66844804-3	chr14	66844300	66845300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	23800.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	36.61	39.17	27.75	29.01	23.33	40.19	29.57	34.93	24.36
Merged-chr6-42419652-3	chr6	42419153	42420153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14124.0	NM_199159	387512.0	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	7.44	13.82	5.55	18.22	10.73	12.86	8.45	7.52	8.74
Merged-chr11-48856960-3	chr11	48856458	48857458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14462.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	56.63	64.05	29.6	41.16	39.65	49.83	48.58	62.35	41.22
Merged-chr15-79741398-3	chr15	79740888	79741888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194342, intron 1 of 16)	intron (NM_194342, intron 1 of 16)	1148.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	202.51	146.99	55.5	190.95	145.55	90.83	100.34	130.88	49.34
Merged-chr7-30563271-3	chr7	30562779	30563779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	-61.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	173.9	188.0	171.12	135.62	206.2	168.8	195.39	228.6	131.78
Merged-chr1-77741492-3	chr1	77740997	77741997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	-226409.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	14.87	16.13	3.7	17.54	8.86	8.04	41.19	17.24	16.24
Merged-chr5-149272671-3	chr5	149272173	149273173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308462, intron 2 of 3)	intron (NM_001308462, intron 2 of 3)	7669.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	31.46	29.95	22.2	21.59	33.12	44.21	26.4	35.37	38.1
Merged-chr13-106639178-3	chr13	106638678	106639678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	297780.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	14.3	9.68	1.85	12.14	13.53	6.43	5.28	6.63	5.0
Merged-chr7-13054370-3	chr7	13053873	13054873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145819, intron 1 of 5)	CpG	391.0	NM_001290452	109889.0	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	18.31	19.35	27.75	15.52	11.66	24.11	16.9	21.67	27.48
Merged-chr2-150749031-3	chr2	150748570	150749570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172117)	promoter-TSS (NM_172117)	-11.0	NM_001355068	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	224.82	263.57	233.09	196.34	200.13	188.09	208.07	219.31	136.15
Merged-chr7-66384421-3	chr7	66383904	66384904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	(CA)n|Simple_repeat|Simple_repeat	-2680.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	68.07	81.1	58.27	48.58	54.58	42.6	84.49	95.95	105.55
Merged-chr17-33760485-3	chr17	33759984	33760984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008997)	promoter-TSS (NM_008997)	2.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	419.32	456.18	321.88	360.3	352.21	248.37	345.37	426.25	196.73
Merged-chr11-94386474-3	chr11	94385979	94386979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	6497.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	141.3	137.31	80.47	136.97	115.23	106.9	168.99	137.07	57.46
Merged-chr10-43668117-3	chr10	43667626	43668626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74699.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	24.03	21.2	12.95	27.66	25.19	17.68	35.91	40.68	9.99
Merged-chr10-22200430-2	chr10	22199928	22200928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	RLTR45|LTR|ERVK	26526.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	30.32	24.88	31.45	29.69	17.26	59.48	2.11	1.77	6.25
Merged-chr6-113076672-5	chr6	113076154	113077154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028385)	promoter-TSS (NM_028385)	590.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	208.8	184.77	180.37	192.97	140.42	179.24	199.62	203.84	117.41
Merged-chr6-97179635-1	chr6	97179135	97180135	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-511.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	114.41	95.38	85.1	96.48	115.23	90.02	132.02	107.45	34.35
Merged-chr7-3292961-3	chr7	3292483	3293483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093766)	promoter-TSS (NM_001093766)	-45.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	70.36	63.13	72.15	14.84	7.93	9.65	45.42	35.37	65.58
Merged-chr8-39594923-3	chr8	39594423	39595423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 8 of 9)	Tigger5b|DNA|TcMar-Tigger	47755.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	28.6	14.28	15.72	26.99	11.2	14.47	44.36	25.2	31.85
Merged-chr11-70000545-3	chr11	70000031	70001031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007888)	promoter-TSS (NM_007888)	-95.0	NM_007888	13543.0	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	109.83	91.24	46.25	87.71	60.65	90.02	94.0	89.32	59.33
Merged-chr12-112840367-3	chr12	112839895	112840895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10874.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	144.16	127.18	118.39	90.41	74.17	120.57	102.45	119.83	103.67
Merged-chr19-41482413-2	chr19	41481887	41482887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-42865.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	94.96	88.01	139.67	105.93	76.97	92.44	127.8	102.58	61.83
Merged-chr5-76524848-3	chr5	76524362	76525362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4445.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	56.63	76.49	108.22	70.17	71.84	72.34	81.33	82.69	71.2
Merged-chr8-84981732-2	chr8	84981273	84982273	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	397.01	343.28	230.31	389.99	292.03	277.31	378.11	428.9	242.32
Merged-chr17-71483979-1	chr17	71483479	71484479	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-8636.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	4.0	4.61	5.55	4.72	8.4	8.04	110.9	122.04	62.45
Merged-chr16-91522229-3	chr16	91521726	91522726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5318.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	195.07	118.88	90.65	156.53	118.49	149.5	164.76	157.85	115.54
Merged-chr8-119825010-3	chr8	119824495	119825495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	15584.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	128.14	131.32	81.4	128.2	123.16	103.69	109.84	136.63	66.82
Merged-chr1-44102508-3	chr1	44102015	44103015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029368)	promoter-TSS (NM_029368)	-74.0	NM_001356297	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	145.87	134.55	121.17	168.0	132.49	114.14	124.63	96.39	81.19
Merged-chr13-58359166-3	chr13	58358659	58359659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4212.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	30.89	17.97	20.35	28.34	28.46	35.37	23.24	8.4	17.49
Merged-chr14-73049132-3	chr14	73048625	73049625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133720)	promoter-TSS (NM_133720)	-11.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	74.94	109.67	60.12	78.27	108.23	65.11	111.96	137.07	59.33
Merged-chr8-126763785-3	chr8	126763293	126764293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85227.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	27.46	23.96	22.2	41.83	20.53	45.01	19.01	16.8	10.62
Merged-chr1-171234400-3	chr1	171233899	171234899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-50.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	145.3	147.45	160.02	174.08	147.42	163.97	226.02	234.79	148.01
Merged-chr15-34082732-3	chr15	34082249	34083249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026002)	promoter-TSS (NM_026002)	30.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	299.76	310.57	246.96	282.71	251.45	258.82	265.1	255.57	181.11
Merged-chr5-52783061-3	chr5	52782538	52783538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308144)	promoter-TSS (NM_001308144)	-17.0	NM_001308144	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	20.59	10.14	18.5	20.24	19.13	14.47	35.91	13.71	12.49
Merged-chr7-4274039-3	chr7	4273543	4274543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011093)	promoter-TSS (NM_011093)	-100.0	NM_011093	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	68.65	69.12	64.75	84.34	67.64	63.5	30.63	27.86	21.86
Merged-chr2-90940917-3	chr2	90940383	90941383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198683, intron 1 of 13)	CpG	486.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	167.61	169.57	123.94	208.49	209.0	162.37	166.88	172.45	119.91
Merged-chr17-45686310-3	chr17	45685790	45686790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	-59.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	275.16	196.29	141.52	192.97	123.16	110.92	216.52	221.97	99.92
Merged-chr7-104366509-3	chr7	104366011	104367011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7865.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	25.17	22.58	12.95	20.92	20.53	44.21	28.52	26.97	31.85
Merged-chr11-44520260-4	chr11	44519812	44520812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	935.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	197.93	182.01	151.69	160.58	125.96	161.56	234.47	251.15	122.41
Merged-chr4-126412746-3	chr4	126412247	126413247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153402, intron 2 of 18)	RMER19B|LTR|ERVK	16795.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	52.06	44.24	28.67	39.81	47.12	48.23	36.97	31.84	19.36
Merged-chr2-3727810-3	chr2	3727312	3728312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	14354.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	112.12	72.8	21.27	118.08	88.17	48.23	68.65	53.06	43.09
Merged-chr3-142394241-3	chr3	142393742	142394742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1454.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	60.07	88.01	50.87	72.19	59.71	80.38	53.87	78.26	51.84
Merged-chr3-96302825-3	chr3	96302323	96303323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8854.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	37.76	33.64	43.47	40.48	25.66	32.15	69.71	86.66	48.09
Merged-chr1-178336587-3	chr1	178336080	178337080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149827, intron 1 of 16)	CpG	1235.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	297.47	216.11	160.94	260.44	188.47	180.05	216.52	172.45	153.01
Merged-chr2-60884204-3	chr2	60883709	60884709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	MLT1M|LTR|ERVL-MaLR	-2771.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	59.49	49.3	34.22	58.7	48.52	68.32	57.03	50.85	43.72
Merged-chr7-100534402-3	chr7	100533908	100534908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2692.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	66.93	73.73	59.2	62.75	47.12	61.89	61.26	82.69	58.71
Merged-chr9-35187683-3	chr9	35187168	35188168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177847, exon 7 of 7)	3' UTR (NM_001177847, exon 7 of 7)	-11681.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	23.45	22.58	18.5	24.96	9.33	32.15	12.67	11.94	19.98
Merged-chr10-94035442-3	chr10	94034928	94035928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053072)	promoter-TSS (NM_053072)	314.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	36.61	24.42	19.42	48.58	34.06	30.54	66.54	62.35	23.11
Merged-chr2-91972364-3	chr2	91971861	91972861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-8798.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	233.4	195.37	109.14	269.21	178.67	174.42	213.35	245.84	102.42
Merged-chr8-106683113-3	chr8	106682612	106683612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173037)	promoter-TSS (NM_173037)	44.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	49.2	38.71	66.6	35.09	34.99	57.07	100.34	70.3	36.22
Merged-chr17-88440522-3	chr17	88439970	88440970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-234.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	87.52	67.74	98.05	115.38	64.84	88.42	92.94	35.82	60.58
Merged-chr9-75196536-3	chr9	75196030	75197030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 32 of 40)	intron (NM_010864, intron 32 of 40)	-35484.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	3.43	5.07	9.25	13.49	9.8	11.25	7.39	7.07	9.99
Merged-chr1-86229627-3	chr1	86229145	86230145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-73576.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	114.41	107.82	62.9	169.35	130.16	121.37	74.99	82.69	77.44
Merged-chr1-43337529-3	chr1	43337026	43338026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108225.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	22.88	17.97	31.45	39.13	22.39	12.86	27.46	25.2	12.49
Merged-chr19-12833780-3	chr19	12833271	12834271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361971)	TTS (NM_001361971)	-28006.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	88.1	135.47	55.5	142.37	149.75	100.47	79.21	113.64	64.95
Merged-chr12-108794394-5	chr12	108793898	108794898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 1 of 4)	CpG-3499	1087.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	472.52	293.06	330.21	439.24	273.84	244.35	347.48	218.87	199.22
Merged-chr7-140953902-3	chr7	140953413	140954413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	2048.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	194.5	187.54	140.59	170.03	141.82	113.33	182.72	163.16	131.15
Merged-chr2-38926321-3	chr2	38925722	38926722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010264, exon 1 of 11)	5' UTR (NM_010264, exon 1 of 11)	239.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	60.64	53.45	43.47	63.42	33.59	30.54	45.42	43.33	26.23
Merged-chr17-39845000-10	chr17	39844486	39845486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	1989.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	412.45	213.34	400.5	230.75	81.17	186.48	142.59	68.09	272.29
Merged-chr6-134567034-4	chr6	134566538	134567538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008514)	promoter-TSS (NM_008514)	-125.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	181.34	128.1	139.67	189.6	75.57	111.73	246.09	88.43	75.57
Merged-chr7-45488843-3	chr7	45488339	45489339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027903)	promoter-TSS (NM_027903)	-34.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	29.75	19.81	39.77	39.13	25.19	36.97	42.25	27.41	24.36
Merged-chr2-104590331-3	chr2	104589832	104590832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177253)	promoter-TSS (NM_177253)	-152.0	NM_177253	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	153.88	148.83	98.97	99.86	108.23	96.45	147.87	143.26	99.3
Merged-chr1-144004952-3	chr1	144004472	144005472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-823.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	289.46	405.49	197.94	361.65	412.39	270.88	258.77	506.72	178.61
Merged-chr9-123924844-3	chr9	123924339	123925339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	43853.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	490.25	280.16	318.18	477.03	272.44	381.0	390.79	341.8	231.08
Merged-chr6-138140494-3	chr6	138139988	138140988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-39.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	56.63	97.23	37.0	59.38	104.03	60.28	32.74	32.72	11.24
Merged-chr7-75782161-3	chr7	75781682	75782682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66156.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	104.69	138.24	107.29	88.39	97.5	94.04	118.29	144.15	98.68
Merged-chr9-7567524-3	chr9	7567034	7568034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008611, exon 10 of 10)	exon (NM_008611, exon 10 of 10)	-3862.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	56.63	64.05	36.07	85.01	70.44	57.07	85.55	75.61	34.35
Merged-chr9-41105272-3	chr9	41104771	41105771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-25765.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	72.08	76.49	41.62	89.06	64.84	49.03	107.73	109.22	61.2
Merged-chr4-154864408-3	chr4	154863902	154864902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_154548, exon 5 of 5)	non-coding (NR_154548, exon 5 of 5)	-5183.0	NM_013783	27390.0	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	17.73	12.9	8.32	18.22	10.26	14.47	12.67	7.96	9.99
Merged-chr7-49159139-3	chr7	49158648	49159648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	3010.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	52.06	39.17	5.55	98.51	85.84	84.4	79.21	64.11	51.21
Merged-chr16-24653269-3	chr16	24652777	24653777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-68578.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	17.16	20.74	11.1	44.53	32.19	24.11	19.01	28.74	5.62
Merged-chr5-144100331-3	chr5	144099849	144100849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081109)	promoter-TSS (NM_001081109)	-87.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	12.01	11.98	16.65	8.77	11.66	17.68	30.63	9.29	2.5
Merged-chr17-27840019-3	chr17	27839523	27840523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011432)	promoter-TSS (NM_011432)	-64.0	NM_011432	20630.0	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	269.44	248.82	153.54	200.39	217.86	171.21	207.01	260.88	119.91
Merged-chr9-89261957-3	chr9	89261458	89262458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	50574.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	49.2	47.0	35.15	57.35	41.99	49.83	44.36	46.87	43.09
Merged-chr6-88902270-3	chr6	88901767	88902767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	16.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	185.92	276.01	200.71	265.84	408.19	317.5	320.02	438.63	144.89
Merged-chr15-50827538-3	chr15	50827028	50828028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	61521.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	54.92	51.15	31.45	33.74	36.85	28.94	38.02	29.18	24.98
Merged-chr18-64887199-3	chr18	64886697	64887697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-559.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	34.32	46.54	47.17	45.21	37.79	39.39	59.15	58.81	49.96
Merged-chr8-69006067-3	chr8	69005556	69006556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82680.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	98.39	76.03	60.12	90.41	50.38	49.83	114.07	145.92	76.19
Merged-chr16-76762031-3	chr16	76761530	76762530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	17062.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	64.64	49.3	20.35	62.75	40.12	28.94	114.07	104.79	24.36
Merged-chr13-106836356-3	chr13	106835844	106836844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	100614.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	18.31	25.8	3.7	26.99	26.12	15.27	7.39	11.05	3.12
Merged-chr2-11496888-3	chr2	11496378	11497378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	MTEb|LTR|ERVL-MaLR	5212.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	50.91	68.66	25.9	69.5	49.92	49.03	58.09	57.04	33.1
Merged-chr19-47147947-3	chr19	47147458	47148458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3784.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	106.97	56.22	18.5	100.53	80.71	44.21	147.87	157.85	51.21
Merged-chr12-36042545-3	chr12	36042042	36043042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025359)	promoter-TSS (NM_025359)	-64.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	82.38	78.33	39.77	135.62	115.23	98.06	25.35	20.78	14.99
Merged-chr2-167815311-3	chr2	167814758	167815758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117069.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	217.38	182.47	145.22	217.26	147.42	159.95	171.1	202.51	131.15
Merged-chr8-126759907-1	chr8	126759407	126760407	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89113.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	18.31	25.8	8.32	71.52	43.39	64.3	16.9	21.22	18.74
Merged-chr19-32804915-3	chr19	32804414	32805414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 5 of 8)	intron (NM_008960, intron 5 of 8)	47337.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	15.45	15.67	14.8	21.59	8.4	8.84	15.84	15.48	21.23
Merged-chr10-58255466-3	chr10	58254992	58255992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027375)	promoter-TSS (NM_027375)	-34.0	NM_027375	70297.0	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	57.21	58.98	47.17	53.98	65.31	40.19	52.81	54.39	48.09
Merged-chr17-32389413-3	chr17	32388886	32389886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033525)	promoter-TSS (NR_033525)	53.0	NR_033525	22404.0	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	51.48	46.08	33.3	53.98	33.59	58.68	66.54	37.14	35.6
Merged-chr14-103346418-1	chr14	103345918	103346918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_207215, exon 1 of 85)	exon (NM_207215, exon 1 of 85)	382.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	136.15	109.67	119.32	155.19	101.7	98.87	136.25	102.58	71.82
Merged-chr11-69420003-3	chr11	69419493	69420493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6318.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	374.7	339.14	209.04	342.76	260.31	195.32	212.29	252.04	141.14
Merged-chr2-26964418-3	chr2	26963914	26964914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207234)	promoter-TSS (NM_207234)	-28.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	283.17	312.87	221.06	288.1	261.24	223.45	301.01	304.21	166.12
Merged-chr11-106036801-3	chr11	106036310	106037310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027946)	promoter-TSS (NM_027946)	-62.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	48.62	48.38	39.77	39.81	53.65	36.17	77.1	75.17	51.21
Merged-chr19-25138339-3	chr19	25137826	25138826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	B1_Mur2|SINE|Alu	-98649.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	57.78	65.89	31.45	64.1	41.99	40.99	104.56	95.07	59.95
Merged-chr5-112950992-3	chr5	112950492	112951492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54630.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	74.94	77.41	62.9	67.47	80.71	61.89	81.33	55.71	51.21
Merged-chr14-67884902-3	chr14	67884413	67885413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-25168.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	149.31	129.94	123.02	114.03	94.7	100.47	120.41	78.26	78.07
Merged-chr17-74339272-4	chr17	74338859	74339859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162870, exon 1 of 17)	exon (NM_001162870, exon 1 of 17)	372.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	131.57	105.52	111.92	205.79	117.09	102.08	282.0	205.61	114.91
Merged-chr2-150782546-3	chr2	150782050	150783050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4246.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	89.24	76.03	49.95	81.64	54.58	61.09	63.37	87.55	51.21
Merged-chr7-30323158-3	chr7	30322654	30323654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-779.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	172.76	182.47	159.09	210.51	226.72	213.0	123.57	126.02	70.57
Merged-chr7-126396880-3	chr7	126396385	126397385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010900)	promoter-TSS (NM_010900)	-148.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	34.32	44.7	46.25	41.83	42.45	25.72	34.85	36.26	29.98
Merged-chr9-120709414-1	chr9	120708914	120709914	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132083.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.15	3.23	1.85	12.14	18.19	10.45	0.0	3.54	3.12
Merged-chr5-8894804-3	chr5	8894266	8895266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 2 of 27)	intron (NM_008830, intron 2 of 27)	1045.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	30.32	17.97	30.52	36.43	20.53	12.86	46.47	57.04	19.36
Merged-chr2-6259325-3	chr2	6258829	6259829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	MTC|LTR|ERVL-MaLR	-46335.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	81.8	84.78	50.87	87.04	67.64	61.89	78.16	87.11	53.71
Merged-chr2-24949682-3	chr2	24949181	24950181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	-96.0	NM_026021	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	55.49	26.73	25.9	47.23	27.52	20.9	41.19	23.88	9.37
Merged-chr18-32147623-3	chr18	32147099	32148099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8029.0	NM_001042767	19123.0	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	6.86	5.07	14.8	16.87	9.8	14.47	7.39	3.54	6.87
Merged-chr13-63568010-3	chr13	63567503	63568503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG	-2268.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	58.35	44.24	32.37	73.54	63.91	67.52	124.63	118.5	39.97
Merged-chr8-47675199-3	chr8	47674696	47675696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-37.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	337.51	231.77	227.54	269.89	191.73	187.28	228.14	213.57	144.89
Merged-chr2-39004617-3	chr2	39004135	39005135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025592, intron 2 of 3)	intron (NM_025592, intron 2 of 3)	496.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	131.57	99.53	44.4	164.63	124.09	108.51	161.6	106.12	53.71
Merged-chr2-165885686-3	chr2	165885168	165886168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-830.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	175.05	167.73	125.79	161.93	136.69	183.26	202.79	198.09	146.14
Merged-chr18-20698274-3	chr18	20697773	20698773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	L1M4|LINE|L1	-33013.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	185.35	255.74	107.29	203.76	139.95	118.96	195.39	226.83	123.66
Merged-chr16-10418010-3	chr16	10417497	10418497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6059.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	49.2	68.2	55.5	38.46	36.39	65.91	58.09	56.16	70.57
Merged-chr12-71051296-3	chr12	71050780	71051780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	B2_Mm2|SINE|B2	35313.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	10.87	15.21	9.25	16.19	20.06	20.9	6.34	16.8	12.49
Merged-chr5-30647922-3	chr5	30647392	30648392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175675)	promoter-TSS (NM_175675)	-44.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	154.45	161.27	151.69	199.72	238.39	143.07	237.64	229.04	165.5
Merged-chr4-132843208-3	chr4	132842715	132843715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146154)	promoter-TSS (NM_146154)	-46.0	NM_146154	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	21.17	18.43	24.97	53.3	34.99	40.99	47.53	38.91	11.87
Merged-chr13-21161373-3	chr13	21160876	21161876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18321.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	13.73	19.35	14.8	8.77	14.46	9.65	9.51	7.96	5.0
Merged-chr16-78577349-3	chr16	78576858	78577858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-670.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	153.88	174.18	136.89	132.24	139.02	107.71	162.65	189.69	91.18
Merged-chr14-54464831-3	chr14	54464338	54465338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022993, intron 1 of 6)	intron (NM_022993, intron 1 of 6)	691.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	118.42	103.22	87.87	90.41	86.77	99.67	101.39	84.45	48.09
Merged-chr16-57336908-3	chr16	57336412	57337412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-16365.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	211.66	204.59	121.17	186.22	130.16	85.2	177.44	213.57	93.68
Merged-chr14-66182768-3	chr14	66182261	66183261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	31063.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	112.12	69.58	87.87	64.1	43.85	53.85	102.45	115.41	40.59
Merged-chr8-82940141-3	chr8	82939636	82940636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	76780.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	54.35	51.15	54.57	107.28	96.1	94.85	48.58	41.56	54.33
Merged-chr17-26535495-3	chr17	26535009	26536009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26003.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	469.66	417.01	283.96	437.22	343.35	285.34	303.13	425.81	181.74
Merged-chr19-5648888-3	chr19	5648358	5649358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009045)	TTS (NM_009045)	11368.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	219.1	232.24	129.49	234.13	201.07	209.79	195.39	283.87	146.14
Merged-chr5-34187935-3	chr5	34187428	34188428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-218.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	47.48	41.01	72.15	64.77	47.58	63.5	53.87	35.37	28.1
Merged-chr17-45584252-3	chr17	45583754	45584754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199116)	TTS (NM_001199116)	8139.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	136.72	137.77	131.34	120.1	121.76	90.02	175.33	196.32	116.79
Merged-chr16-91405795-3	chr16	91405284	91406284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	-451.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	346.66	272.32	147.99	325.21	220.66	194.52	273.55	343.12	151.76
Merged-chr17-29660588-3	chr17	29660091	29661091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-4.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	169.9	195.37	125.79	209.84	165.61	119.76	166.88	191.46	120.53
Merged-chr15-4734280-3	chr15	4733775	4734775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016704, intron 3 of 15)	intron (NM_016704, intron 3 of 15)	7065.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	50.34	35.94	38.85	43.86	33.12	49.83	64.43	37.58	45.59
Merged-chr13-41604326-3	chr13	41603810	41604810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	251.7	299.51	173.89	209.84	206.66	188.09	259.82	319.24	151.76
Merged-chr8-113643663-3	chr8	113643168	113644168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173015, exon 5 of 5)	3' UTR (NM_173015, exon 5 of 5)	455.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	31.46	23.96	13.87	19.57	17.73	31.35	30.63	19.9	18.74
Merged-chr8-41003232-3	chr8	41002714	41003714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	L1MB2|LINE|L1	-14254.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	49.77	43.31	12.95	40.48	34.99	25.72	171.1	163.6	54.96
Merged-chr14-31413911-3	chr14	31413412	31414412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	MLT1K|LTR|ERVL-MaLR	3765.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	84.66	77.41	86.02	97.16	70.91	101.28	118.29	113.64	71.82
Merged-chr4-133339432-3	chr4	133338931	133339931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199306)	promoter-TSS (NM_199306)	-116.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	52.06	51.61	51.8	66.12	64.84	57.07	47.53	42.45	22.48
Merged-chr3-90248094-3	chr3	90247593	90248593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013901)	promoter-TSS (NM_013901)	-99.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	558.9	542.8	405.13	514.13	530.42	405.91	490.07	620.8	297.9
Merged-chr16-92410331-3	chr16	92409851	92410851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-10273.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	86.38	66.81	64.75	106.61	74.64	70.73	29.57	36.7	38.72
Merged-chr1-9859158-3	chr1	9858660	9859660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	intron (NM_001037759, intron 1 of 16)	10879.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	13.73	28.57	24.05	14.84	17.26	17.68	17.96	23.88	18.11
Merged-chr8-106060019-3	chr8	106059520	106060520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 1 of 9)	CpG	417.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	191.07	221.18	206.26	168.68	135.29	171.21	180.61	174.21	132.4
Merged-chr2-158306355-3	chr2	158305849	158306849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-144.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	124.71	111.97	80.47	83.66	62.98	40.99	178.5	150.78	59.95
Merged-chr6-115995098-3	chr6	115994649	115995649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-144.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	135.58	105.52	94.35	148.44	91.9	89.22	129.91	139.28	77.44
Merged-chr8-120736299-3	chr8	120735802	120736802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008320)	promoter-TSS (NM_008320)	-56.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	90.38	73.73	92.5	136.29	82.57	125.39	166.88	121.6	64.33
Merged-chr13-34254902-3	chr13	34254402	34255402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90280.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	241.98	267.72	172.97	219.28	178.67	152.72	170.05	226.39	103.05
Merged-chr3-95990575-3	chr3	95990064	95991064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 5 of 5)	intron (NM_023320, intron 5 of 5)	5054.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	143.59	135.01	121.17	182.17	124.56	141.47	181.66	218.43	87.43
Merged-chr2-120578485-3	chr2	120577993	120578993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	10822.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	335.8	296.28	145.22	362.32	205.26	196.12	295.73	302.88	120.53
Merged-chrX-160138033-2	chrX	160137541	160138541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008810, intron 1 of 10)	CpG	389.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	184.2	175.1	135.97	205.11	155.81	131.02	158.43	162.28	66.82
Merged-chr1-55052685-3	chr1	55052184	55053184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026424)	promoter-TSS (NM_026424)	-86.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	390.14	363.56	240.49	422.37	368.54	208.18	324.25	386.01	156.76
Merged-chr7-4073415-3	chr7	4072911	4073911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033568)	TTS (NR_033568)	-10207.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	47.48	33.18	31.45	44.53	31.26	49.03	62.31	41.56	33.72
Merged-chr7-133638294-1	chr7	133637794	133638794	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178115, intron 1 of 24)	CpG	619.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	57.21	55.75	59.2	62.75	55.05	82.79	74.99	50.85	42.47
Merged-chr10-128377115-4	chr10	128376600	128377600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172790)	promoter-TSS (NM_172790)	-24.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	128.71	87.55	98.05	119.43	73.71	102.08	134.14	58.81	62.45
Merged-chr17-46835626-3	chr17	46835119	46836119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-4206.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	50.34	33.64	24.05	29.01	20.99	44.21	45.42	32.72	30.6
Merged-chr8-22060625-3	chr8	22060122	22061122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	-99.0	NR_040650	207958.0	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	20.59	28.11	12.95	37.11	34.52	24.11	31.69	18.57	6.87
Merged-chr9-40330780-3	chr9	40330235	40331235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357618, intron 3 of 20)	intron (NM_001357618, intron 3 of 20)	-2737.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	10.87	0.92	1.85	7.42	3.27	1.61	6.34	4.86	2.5
Merged-chr13-44660000-3	chr13	44659518	44660518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70756.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	32.04	23.5	16.65	42.51	29.86	27.33	54.92	45.99	16.24
Merged-chr17-87265961-3	chr17	87265469	87266469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-22.0	NM_139295	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	180.2	140.08	148.92	205.11	184.74	146.29	161.6	147.24	86.18
Merged-chr8-14233208-3	chr8	14232685	14233685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 2 of 15)	intron (NM_172910, intron 2 of 15)	137310.0	NM_172910	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	11.44	7.83	9.25	7.42	5.13	12.86	5.28	7.52	5.0
Merged-chr16-50753261-3	chr16	50752759	50753759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20486.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	121.28	112.89	32.37	135.62	154.41	123.78	61.26	98.16	31.23
Merged-chr9-124143816-3	chr9	124143306	124144306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22263.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	74.37	87.09	51.8	106.61	64.38	53.05	84.49	121.6	61.83
Merged-chr13-34050691-3	chr13	34050193	34051193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	13052.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	125.28	133.17	68.45	105.26	106.36	87.61	28.52	26.97	23.73
Merged-chr6-34675089-3	chr6	34674592	34675592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 2 of 13)	ORR1E|LTR|ERVL-MaLR	-34352.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	14.87	31.79	14.8	24.96	31.26	24.11	39.08	67.65	18.74
Merged-chr10-20773356-3	chr10	20772845	20773845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48267.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	168.18	160.35	78.62	188.25	138.09	65.11	167.93	263.97	70.57
Merged-chr11-45718721-1	chr11	45718221	45719221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89362.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	8.01	5.99	12.02	12.82	8.4	10.45	4.22	2.65	1.25
Merged-chr5-108461261-3	chr5	108460745	108461745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172716)	promoter-TSS (NM_172716)	-87.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	45.19	39.63	39.77	43.18	47.12	65.91	55.98	28.3	21.23
Merged-chr19-57610070-3	chr19	57609597	57610597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-937.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	113.84	150.22	132.27	95.81	104.5	145.49	109.84	118.5	102.42
Merged-chr12-36039602-3	chr12	36039113	36040113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	2865.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	181.91	175.56	91.57	182.17	183.34	131.02	91.89	88.88	36.85
Merged-chr11-5785895-3	chr11	5785400	5786400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2583.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	73.79	91.24	81.4	86.36	75.57	108.51	116.18	131.32	60.58
Merged-chr7-101908495-3	chr7	101907983	101908983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025605, intron 1 of 4)	intron (NM_025605, intron 1 of 4)	-2124.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	85.81	96.76	116.54	65.45	59.25	67.52	113.01	95.95	84.31
Merged-chr15-41789146-8	chr15	41788704	41789704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	170.0	NM_001130165	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	158.46	125.79	131.34	145.74	138.09	167.99	136.25	104.79	74.94
Merged-chr17-33919596-3	chr17	33919095	33920095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020625)	TTS (NM_020625)	117.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	411.88	348.35	223.84	332.64	294.83	214.61	236.59	392.2	156.13
Merged-chr17-25115998-3	chr17	25115516	25116516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163661)	promoter-TSS (NM_001163661)	-49.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	76.08	77.41	90.65	159.91	117.09	124.59	116.18	112.75	54.33
Merged-chr14-30717017-3	chr14	30716521	30717521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166532, intron 1 of 20)	intron (NM_001166532, intron 1 of 20)	1406.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	161.89	227.17	181.29	211.19	251.45	181.66	221.8	280.33	114.29
Merged-chr12-51678959-3	chr12	51678464	51679464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	RSINE1|SINE|B4	-12002.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	94.39	87.09	61.05	91.76	76.97	65.11	125.69	145.03	66.82
Merged-chr15-82906203-3	chr15	82905694	82906694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045068)	TTS (NR_045068)	5940.0	NM_013836	21411.0	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	26.89	14.75	14.8	31.04	7.0	13.66	16.9	19.9	9.37
Merged-chr1-43321658-3	chr1	43321167	43322167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124084.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	92.1	138.24	45.32	87.04	53.65	48.23	106.67	120.27	56.83
Merged-chr11-100527990-3	chr11	100527489	100528489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199296)	promoter-TSS (NM_001199296)	11.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	64.07	44.24	79.55	60.72	56.45	84.4	61.26	63.23	54.96
Merged-chr18-39801315-3	chr18	39800807	39801807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27810.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	264.29	281.08	120.24	229.4	178.21	202.55	269.33	301.12	166.12
Merged-chr8-126845788-3	chr8	126845295	126846295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3225.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	338.08	277.85	188.69	344.78	248.18	206.57	278.83	324.99	118.04
Merged-chr7-27258712-3	chr7	27258217	27259217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010950)	promoter-TSS (NM_010950)	-44.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	30.89	25.8	35.15	31.71	24.72	33.76	40.14	37.14	25.61
Merged-chr3-52268346-3	chr3	52267821	52268821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-16.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	105.83	72.8	90.65	80.29	69.51	80.38	102.45	76.49	51.21
Merged-chr15-60824976-3	chr15	60824484	60825484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162926)	promoter-TSS (NM_001162926)	96.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	43.48	59.9	52.72	78.94	55.98	54.66	50.7	49.08	38.72
Merged-chr7-25395296-3	chr7	25394790	25395790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073027, exon 2 of 6)	non-coding (NR_073027, exon 2 of 6)	577.0	NR_015569	654804.0	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	203.08	169.57	160.94	130.22	126.42	150.31	178.5	166.7	113.66
Merged-chr10-128695802-1	chr10	128695302	128696302	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177411, intron 1 of 5)	intron (NM_177411, intron 1 of 5)	466.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	275.73	291.68	262.69	224.01	236.99	217.02	235.53	264.86	191.11
Merged-chr4-141558726-3	chr4	141558182	141559182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12520.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	210.52	131.78	96.2	165.98	152.08	100.47	192.23	208.26	68.7
Merged-chr5-110448605-3	chr5	110448091	110449091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-88.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	124.71	74.19	95.27	118.75	52.72	85.2	127.8	71.63	69.32
Merged-chr2-153632752-3	chr2	153632253	153633253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195390)	promoter-TSS (NM_001195390)	28.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	57.78	61.75	65.67	89.06	103.1	113.33	73.93	63.67	48.09
Merged-chr3-62507013-3	chr3	62506505	62507505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028136)	promoter-TSS (NM_028136)	-17.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	109.83	78.33	53.65	130.9	62.98	49.83	113.01	57.04	38.1
Merged-chr6-82714421-3	chr6	82713913	82714913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60041.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	2.29	4.61	2.77	5.4	2.8	6.43	6.34	7.07	5.62
Merged-chr1-168432438-3	chr1	168431918	168432918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291509)	promoter-TSS (NM_001291509)	-249.0	NM_008783	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	20.59	25.34	34.22	79.62	57.38	52.25	79.21	79.59	46.22
Merged-chr15-58888997-3	chr15	58888512	58889512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175226)	promoter-TSS (NM_175226)	-217.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	361.54	282.0	255.29	327.91	218.79	184.87	304.18	232.58	143.02
Merged-chrX-74023914-3	chrX	74023415	74024415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008363)	promoter-TSS (NM_008363)	3.0	NM_001177975	16179.0	Mm.38241	NM_008363	ENSMUSG00000031392	Irak1	AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK	interleukin-1 receptor-associated kinase 1	protein-coding	153.88	126.25	108.22	165.98	141.35	118.16	120.41	113.19	49.96
Merged-chr11-102430379-3	chr11	102429886	102430886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008175)	promoter-TSS (NM_008175)	64.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	392.43	288.91	264.54	337.36	289.24	229.88	379.17	412.54	178.61
Merged-chr7-101549000-3	chr7	101548498	101549498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6804.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	110.41	97.69	68.45	133.59	72.78	58.68	251.37	321.46	124.28
Merged-chr5-115635693-3	chr5	115635190	115636190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198163, intron 1 of 5)	intron (NM_198163, intron 1 of 5)	3703.0	NM_198163	77407.0	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	21.17	16.13	22.2	18.89	13.53	24.11	30.63	22.11	8.74
Merged-chr5-103754030-3	chr5	103753516	103754516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080798)	promoter-TSS (NM_001080798)	-146.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	427.9	384.75	378.31	373.12	320.96	324.73	360.16	374.52	201.72
Merged-chr5-45450401-3	chr5	45449914	45450914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024236)	promoter-TSS (NM_024236)	-185.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	86.95	62.67	37.92	89.06	75.11	52.25	72.88	60.13	45.59
Merged-chr2-121140532-3	chr2	121140044	121141044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177846, exon 1 of 1)	exon (NM_177846, exon 1 of 1)	116.0	NM_001290812	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	223.67	239.15	150.77	244.92	252.85	243.55	318.97	363.46	172.37
Merged-chr14-27428780-3	chr14	27428267	27429267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114879)	promoter-TSS (NM_001114879)	-67.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	143.59	166.34	183.14	168.68	171.21	210.59	162.65	170.68	159.25
Merged-chr1-9545328-3	chr1	9544824	9545824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021511)	promoter-TSS (NM_021511)	-84.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	84.09	101.83	135.04	107.28	85.84	73.95	102.45	69.42	62.45
Merged-chr19-6291327-3	chr19	6290854	6291854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	14458.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	140.15	130.4	95.27	172.05	112.9	124.59	123.57	126.9	68.07
Merged-chr16-22654559-3	chr16	22654074	22655074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 1 of 23)	intron (NM_001346673, intron 1 of 23)	2657.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	14.3	12.44	3.7	20.24	14.0	11.25	28.52	19.9	7.49
Merged-chr4-132533635-3	chr4	132533089	132534089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007512, exon 2 of 4)	5' UTR (NM_007512, exon 2 of 4)	1825.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	56.06	65.43	76.77	56.0	42.92	77.16	62.31	125.58	61.2
Merged-chr8-35666011-2	chr8	35665516	35666516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 2 of 2)	intron (NM_001081279, intron 2 of 2)	-76996.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	9.15	2.76	15.72	16.19	10.73	12.06	4.22	1.77	1.25
Merged-chr2-50519102-4	chr2	50518647	50519647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164122.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	112.12	123.03	62.9	95.14	82.57	62.7	87.66	90.64	55.58
Merged-chr15-81105060-3	chr15	81104559	81105559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153049)	promoter-TSS (NM_153049)	-12.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	208.23	229.47	111.92	197.02	186.6	159.95	195.39	240.98	109.92
Merged-chr13-52035969-3	chr13	52035482	52036482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60759.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	106.4	88.47	93.42	110.65	66.24	103.69	156.32	128.23	69.32
Merged-chr4-155601580-5	chr4	155601102	155602102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177186, exon 1 of 9)	5' UTR (NM_177186, exon 1 of 9)	186.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	374.12	345.59	273.79	363.67	364.34	236.31	368.61	348.87	144.27
Merged-chr7-16273479-3	chr7	16272977	16273977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136471)	TTS (NM_001136471)	215.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	33.75	22.12	35.15	35.09	24.26	36.97	52.81	25.2	24.98
Merged-chr6-51469404-3	chr6	51468922	51469922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016806, intron 1 of 10)	CpG	472.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	288.89	378.76	225.69	288.78	367.14	263.64	287.28	319.69	214.84
Merged-chr9-21015357-3	chr9	21014888	21015888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	-552.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	191.07	157.13	104.52	181.5	130.62	164.78	165.82	174.21	124.91
Merged-chr17-56831204-3	chr17	56830710	56831710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027787)	promoter-TSS (NM_027787)	-202.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	38.9	23.04	14.8	28.34	15.86	19.29	32.74	22.11	19.36
Merged-chr4-40846783-3	chr4	40846301	40847301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3337.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	128.14	91.24	66.6	131.57	98.43	69.13	138.36	154.32	63.7
Merged-chr10-91138474-3	chr10	91137980	91138980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-14517.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	136.15	136.85	88.8	136.97	143.22	118.96	139.42	189.25	82.44
Merged-chr10-81357482-3	chr10	81357013	81358013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	22.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	229.97	154.36	131.34	187.57	156.28	110.12	207.01	172.0	87.43
Merged-chr10-62651344-3	chr10	62650832	62651832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053183)	promoter-TSS (NM_053183)	-114.0	NM_053183	94213.0	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	338.08	309.65	254.36	287.43	320.02	261.23	316.86	274.14	158.01
Merged-chr8-120112802-3	chr8	120112288	120113288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-1364.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	364.4	336.83	212.74	371.09	237.92	195.32	365.44	497.0	155.51
Merged-chr11-53764034-1	chr11	53763534	53764534	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-380.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	394.72	302.27	167.42	438.57	300.9	246.76	302.07	373.19	149.89
Merged-chr11-71251501-2	chr11	71251009	71252009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027858, intron 8 of 12)	RMER21A|LTR|ERV1	-20776.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	57.78	70.96	69.37	1.35	0.0	0.0	67.6	53.06	26.23
Merged-chr11-14443553-1	chr11	14443053	14444053	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10-int|LTR|ERVK	155672.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0.0	3.23	1.85	1.35	0.47	3.22	31.69	21.67	18.11
Merged-chr15-58214992-3	chr15	58214482	58215482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-90.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	221.38	192.61	163.72	240.2	229.52	196.12	215.46	236.56	118.66
Merged-chr16-20496809-3	chr16	20496305	20497305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2012.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	21.74	14.75	12.95	20.24	25.66	34.56	33.8	37.58	16.86
Merged-chr3-127762646-3	chr3	127762139	127763139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17888.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	89.24	35.48	25.9	96.48	46.18	43.4	61.26	23.88	19.36
Merged-chr16-11420455-3	chr16	11419974	11420974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 10 of 20)	Tigger17|DNA|TcMar-Tigger	14826.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	70.36	64.51	31.45	92.44	95.17	72.34	88.72	92.41	46.22
Merged-chr10-24149253-3	chr10	24148786	24149786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358563)	promoter-TSS (NM_001358563)	-3.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	132.72	157.59	172.97	156.53	117.56	145.49	166.88	146.36	105.55
Merged-chr7-80387960-3	chr7	80387452	80388452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-6.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	129.28	121.65	161.87	116.73	121.76	200.95	188.0	187.92	124.28
Merged-chr8-18846303-3	chr8	18845801	18846801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026792)	promoter-TSS (NM_026792)	22.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	241.41	223.94	141.52	228.73	217.39	207.38	236.59	195.44	117.41
Merged-chr5-96917758-3	chr5	96917251	96918251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	235.11	223.48	122.09	167.33	111.96	141.47	174.27	223.74	151.14
Merged-chr3-107781456-3	chr3	107780956	107781956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20987.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	47.48	40.09	18.5	41.16	32.66	26.53	21.12	23.88	14.99
Merged-chr1-5083194-3	chr1	5082684	5083684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310442)	promoter-TSS (NM_001310442)	98.0	NM_001310442	108664.0	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	221.38	255.27	138.74	235.48	285.97	184.87	238.7	195.0	115.54
Merged-chr5-64961161-5	chr5	64960657	64961657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1061.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	204.8	177.4	125.79	209.84	164.68	173.62	233.42	254.25	151.14
Merged-chr9-5308749-3	chr9	5308242	5309242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-107.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	207.66	276.93	123.02	191.62	194.07	139.86	173.21	212.68	98.68
Merged-chr12-112829544-3	chr12	112829043	112830043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359292)	promoter-TSS (NM_001359292)	-22.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	120.7	87.55	58.27	69.5	73.24	73.14	61.26	71.63	50.59
Merged-chr3-129725259-3	chr3	129724766	129725766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310737)	promoter-TSS (NM_001310737)	-180.0	NM_001329594	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	147.59	172.33	113.77	136.97	150.68	133.43	168.99	171.12	85.56
Merged-chr6-82994427-3	chr6	82993824	82994824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	(CA)n|Simple_repeat|Simple_repeat	39147.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	106.4	61.75	66.6	87.04	53.18	37.78	78.16	63.67	42.47
Merged-chr17-35993846-3	chr17	35993351	35994351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-653.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	92.1	71.42	40.7	62.75	49.92	45.01	90.83	96.39	38.1
Merged-chr16-90284541-3	chr16	90284037	90285037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-34.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	288.89	260.34	244.19	266.51	235.59	183.26	208.07	217.55	170.5
Merged-chr4-12501287-3	chr4	12500774	12501774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-329259.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	22.88	19.35	37.0	49.25	29.39	38.58	59.15	35.82	29.35
Merged-chr14-26638895-3	chr14	26638405	26639405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	771.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	355.25	382.91	348.71	340.06	360.61	319.1	353.82	442.61	282.29
Merged-chr6-108783048-3	chr6	108782530	108783530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-29.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	308.91	312.87	246.96	286.75	291.57	213.81	249.26	271.05	157.38
Merged-chr4-109118081-3	chr4	109117590	109118590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134791)	promoter-TSS (NM_001134791)	-54.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	118.42	164.96	114.69	141.02	136.69	170.4	170.05	195.88	134.9
Merged-chr1-23380204-3	chr1	23379665	23380665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3010.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	70.93	84.32	48.1	62.75	66.24	49.83	64.43	51.73	44.97
Merged-chr6-26220018-3	chr6	26219485	26220485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	288559.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	21.74	15.67	8.32	17.54	10.73	14.47	9.51	13.27	13.12
Merged-chr9-88482645-3	chr9	88482148	88483148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019796)	promoter-TSS (NM_019796)	-251.0	NM_001284328	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	197.93	141.46	166.49	232.78	139.02	182.46	203.84	139.72	126.78
Merged-chr8-70904694-3	chr8	70904197	70905197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1277.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	30.89	50.23	37.0	29.69	20.53	55.46	43.3	39.35	36.22
Merged-chr3-95651396-3	chr3	95650919	95651919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7302.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	429.61	424.38	256.21	423.05	389.53	335.18	400.29	516.45	259.8
Merged-chrX-8132599-3	chrX	8132089	8133089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026137, exon 1 of 9)	5' UTR (NM_026137, exon 1 of 9)	269.0	NM_001290783	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	147.02	119.8	110.99	136.29	117.09	109.32	81.33	118.5	56.21
Merged-chr10-67703277-3	chr10	67702784	67703784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131325.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	40.62	34.1	21.27	54.65	29.86	29.74	22.18	25.65	13.12
Merged-chr4-101293231-3	chr4	101292723	101293723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27941.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	328.36	299.51	253.44	354.23	334.95	283.74	352.77	387.34	204.85
Merged-chr19-6910502-1	chr19	6910002	6911002	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	-396.0	NM_001358444	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	294.04	217.49	277.49	280.01	194.53	189.69	252.43	261.32	144.27
Merged-chr13-25791493-3	chr13	25790986	25791986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174830.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	18.31	37.32	15.72	22.27	17.73	36.97	31.69	34.05	28.1
Merged-chr5-35584418-3	chr5	35583923	35584923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030721, intron 2 of 18)	(GAA)n|Simple_repeat|Simple_repeat	1389.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	114.98	126.25	62.9	124.15	120.83	96.45	126.74	156.09	71.82
Merged-chr12-3781628-3	chr12	3781125	3782125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_149729, exon 19 of 19)	non-coding (NR_149729, exon 19 of 19)	-25355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	48.62	42.85	48.1	57.35	48.98	55.46	88.72	89.32	23.11
Merged-chr5-103614381-4	chr5	103613883	103614883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029415, intron 3 of 5)	intron (NM_029415, intron 3 of 5)	15020.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	68.07	58.98	44.4	72.87	58.78	47.42	53.87	46.43	38.1
Merged-chr2-129315997-3	chr2	129315497	129316497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6025.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	35.47	24.42	16.65	37.78	22.39	21.7	28.52	29.18	8.74
Merged-chr17-8225383-3	chr17	8224866	8225866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10677.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	52.63	58.52	31.45	47.23	33.59	38.58	19.01	20.78	16.24
Merged-chr11-119389995-3	chr11	119389476	119390476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-496.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	313.49	273.71	266.39	400.78	310.23	287.76	260.88	302.0	173.62
Merged-chr11-72607840-3	chr11	72607336	72608336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	CpG	575.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	392.43	342.82	364.43	275.28	272.91	332.77	297.84	234.79	239.82
Merged-chr3-95434310-3	chr3	95433799	95434799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-91.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	524.0	494.88	221.99	435.19	495.43	240.33	408.74	528.39	186.11
Merged-chr15-25550862-3	chr15	25550374	25551374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71676.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	193.35	187.54	87.87	147.76	84.9	100.47	78.16	75.17	49.96
Merged-chr6-122633505-3	chr6	122633005	122634005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	7081.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	128.14	118.42	94.35	118.08	116.63	126.19	111.96	103.91	79.32
Merged-chr4-59036839-5	chr4	59036353	59037353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025277, intron 1 of 2)	intron (NM_025277, intron 1 of 2)	1697.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	70.93	76.95	49.02	47.9	48.05	61.89	42.25	47.75	54.96
Merged-chr8-122476136-3	chr8	122475634	122476634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	-9.0	NM_153775	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	292.32	203.67	224.76	261.12	138.55	144.68	207.01	143.26	118.66
Merged-chr2-27773032-1	chr2	27772532	27773532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER77|LTR|ERVL	62449.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.43	1.38	11.1	4.05	0.47	0.0	0.0	0.0	5.0
Merged-chr6-100163329-3	chr6	100162832	100163832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124026.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	18.88	15.21	12.95	31.04	20.06	19.29	34.85	13.71	18.74
Merged-chr5-146221032-3	chr5	146220529	146221529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-58.0	NM_001256086	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	159.6	166.8	142.44	128.87	118.49	199.34	227.08	206.05	132.4
Merged-chr19-18671207-2	chr19	18670712	18671712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026120, intron 1 of 7)	CpG	432.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	172.76	90.31	108.22	131.57	95.17	112.53	127.8	64.11	63.7
Merged-chr5-36549411-3	chr5	36548931	36549931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-18808.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	136.72	146.07	106.37	125.5	86.3	74.75	101.39	97.72	79.32
Merged-chr4-53414184-3	chr4	53413678	53414678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26235.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	13.73	12.9	7.4	16.87	12.13	11.25	17.96	15.48	7.49
Merged-chr13-58552153-3	chr13	58551658	58552658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58719.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	30.89	27.65	17.57	16.87	10.26	9.65	16.9	18.13	6.87
Merged-chr13-37347954-3	chr13	37347451	37348451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2606.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	193.93	245.6	151.69	151.81	154.88	137.45	207.01	265.74	155.51
Merged-chrUn_JH584304-10458-1	chrUn_JH584304	9958	10958	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49231.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	584.07	494.34	0.0
Merged-chr4-95770718-3	chr4	95770219	95771219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191298.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	16.59	20.74	8.32	10.8	6.53	12.86	23.24	15.92	12.49
Merged-chr9-120805007-1	chr9	120804507	120805507	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110243.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.72	6.45	1.85	4.05	16.79	3.22	0.0	0.0	3.75
Merged-chr1-64928727-3	chr1	64928233	64929233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	28091.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	69.22	98.15	87.87	60.05	81.17	114.14	105.62	130.0	48.09
Merged-chr1-166409826-3	chr1	166409321	166410321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142948)	promoter-TSS (NM_001142948)	7.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	66.93	35.02	12.95	89.06	41.52	56.27	80.27	45.1	16.24
Merged-chr10-6417884-2	chr10	6417383	6418383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-340710.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	5.72	10.14	16.65	12.82	7.93	16.08	2.11	0.88	1.25
Merged-chr11-43353844-3	chr11	43353357	43354357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20604.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	361.54	469.08	176.67	327.91	404.93	293.38	262.99	414.75	143.02
Merged-chr3-65958316-3	chr3	65957915	65958915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355432)	promoter-TSS (NM_001355432)	-166.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	577.77	431.75	301.53	568.11	454.38	330.36	403.46	398.39	212.34
Merged-chr1-39525963-3	chr1	39525470	39526470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9731.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	17.16	11.52	24.05	16.19	10.73	11.25	10.56	7.96	9.99
Merged-chr8-83768757-2	chr8	83768252	83769252	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-27441.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	4.0	3.23	0.0	20.92	6.53	19.29	7.39	5.75	5.62
Merged-chr9-111118131-3	chr9	111117649	111118649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164838)	promoter-TSS (NM_001164838)	38.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	239.69	194.91	125.79	296.88	244.92	224.26	238.7	179.08	111.17
Merged-chr10-127591158-3	chr10	127590645	127591645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 11 of 88)	intron (NM_008512, intron 11 of 88)	30003.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	241.41	177.86	154.47	284.73	130.16	152.72	200.68	189.25	123.66
Merged-chr6-28929349-3	chr6	28928862	28929862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93257.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	40.04	78.33	39.77	107.28	88.64	43.4	0.0	13.71	23.73
Merged-chr11-95844935-3	chr11	95844415	95845415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023121, intron 2 of 3)	intron (NM_023121, intron 2 of 3)	1670.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	121.28	80.64	88.8	103.23	76.04	100.47	175.33	145.47	67.45
Merged-chr7-133637612-3	chr7	133637125	133638125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-50.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	147.59	179.71	139.67	165.31	175.41	168.8	174.27	223.74	130.53
Merged-chr11-96977387-2	chr11	96976888	96977888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	CpG	300.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	316.92	252.51	229.39	294.18	195.93	235.51	352.77	254.25	173.62
Merged-chr2-31771381-3	chr2	31770881	31771881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	11208.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	237.97	264.49	169.27	222.66	174.01	147.9	190.11	226.39	131.15
Merged-chr1-105971911-4	chr1	105971420	105972420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18362.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	443.91	348.35	198.87	506.04	348.02	201.75	325.31	463.39	224.83
Merged-chr7-28179990-3	chr7	28179485	28180485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	-331.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	27.46	32.25	18.5	29.01	26.59	27.33	40.14	30.51	24.36
Merged-chr15-36793676-3	chr15	36793159	36794159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011740, exon 2 of 7)	5' UTR (NM_011740, exon 2 of 7)	879.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	538.87	393.05	386.63	504.01	380.2	357.69	395.01	286.08	267.92
Merged-chr18-52563804-3	chr18	52563298	52564298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33931.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	57.78	58.98	56.42	49.93	46.18	48.23	73.93	61.46	41.22
Merged-chr7-63858677-3	chr7	63858178	63859178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58179.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	33.18	29.03	26.82	15.52	19.13	17.68	27.46	22.55	27.48
Merged-chr5-96164210-3	chr5	96163706	96164706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	135.0	103.22	49.95	144.39	117.09	69.13	120.41	116.73	46.84
Merged-chr10-17788079-3	chr10	17787585	17788585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8134.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	9.15	18.43	12.02	10.8	12.13	13.66	26.4	36.7	36.85
Merged-chr10-111298625-3	chr10	111298145	111299145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027914)	promoter-TSS (NM_027914)	-34.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	36.04	22.12	30.52	60.05	31.72	45.01	38.02	24.76	38.72
Merged-chr11-109369348-3	chr11	109368852	109369852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-5698.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	237.97	215.19	145.22	276.63	191.27	177.64	181.66	262.65	114.29
Merged-chr17-33981303-1	chr17	33980803	33981803	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-189.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	0.0	0.92	0.0	0.0	1.87	0.0	188.0	224.62	134.27
Merged-chr19-34527527-3	chr19	34527026	34528026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021460)	promoter-TSS (NM_021460)	-52.0	NM_021460	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	148.73	138.24	123.94	161.26	135.29	115.75	172.16	170.23	90.56
Merged-chr1-55419140-3	chr1	55418649	55419649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	13203.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	22.31	16.59	19.42	9.45	7.46	6.43	8.45	6.63	6.87
Merged-chr7-66356391-3	chr7	66355896	66356896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	B1F1|SINE|Alu	25328.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	88.1	106.9	94.35	68.15	77.44	100.47	94.0	107.45	79.94
Merged-chr11-107318754-3	chr11	107318222	107319222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	B1_Mur1|SINE|Alu	-129341.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	366.69	381.53	238.64	371.77	350.81	249.17	376.0	529.27	187.98
Merged-chr1-171272275-3	chr1	171271784	171272784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020579, intron 3 of 7)	intron (NM_020579, intron 3 of 7)	1956.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	110.98	108.28	55.5	100.53	75.57	71.54	76.05	80.47	37.47
Merged-chr2-26389302-3	chr2	26388802	26389802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173180)	promoter-TSS (NM_173180)	14.0	NM_001085407	68112.0	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	110.98	84.78	83.25	98.51	63.91	75.56	101.39	65.44	46.84
Merged-chr16-38758702-3	chr16	38758199	38759199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	16440.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	70.36	75.11	71.22	53.98	52.72	40.99	77.1	69.42	38.1
Merged-chr15-75981591-1	chr15	75981091	75982091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146059, exon 2 of 2)	exon (NM_146059, exon 2 of 2)	694.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	89.81	99.53	103.59	116.73	131.56	102.08	73.93	87.55	68.07
Merged-chr4-41124396-3	chr4	41123896	41124896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139236)	promoter-TSS (NM_139236)	-57.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	65.21	66.81	42.55	63.42	67.64	78.77	89.78	67.21	46.22
Merged-chr1-185332138-3	chr1	185331642	185332642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-17.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	107.55	110.59	84.17	82.99	89.57	69.13	111.96	129.55	71.2
Merged-chr6-73248519-3	chr6	73248015	73249015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	10.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	177.91	158.97	121.17	177.45	165.14	132.63	233.42	183.94	90.56
Merged-chr5-114772066-3	chr5	114771567	114772567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 1 of 18)	intron (NM_001077359, intron 1 of 18)	1424.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	63.5	56.22	70.3	62.75	49.45	83.59	54.92	41.12	53.71
Merged-chr1-59912911-3	chr1	59912415	59913415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037725)	promoter-TSS (NM_001037725)	-91.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	379.27	265.87	285.81	319.82	183.8	187.28	297.84	241.87	191.11
Merged-chr15-95772498-3	chr15	95771994	95772994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18349.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	20.59	12.44	6.47	19.57	16.79	10.45	8.45	15.92	19.36
Merged-chr13-99337686-3	chr13	99337205	99338205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 3 of 9)	MIRb|SINE|MIR	6973.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	189.35	185.24	108.22	163.28	129.69	126.19	199.62	216.66	115.54
Merged-chr4-153877157-3	chr4	153876625	153877625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	73351.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	100.68	125.33	66.6	173.4	185.2	134.23	98.23	125.13	26.85
Merged-chr15-101224195-3	chr15	101223705	101224705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	-2.0	NM_019518	56149.0	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	8.01	4.61	0.0	4.05	8.4	0.0	13.73	6.19	11.24
Merged-chr7-45367246-4	chr7	45366810	45367810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029741)	promoter-TSS (NM_029741)	77.0	NR_027802	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	50.34	23.96	19.42	57.35	55.51	49.03	51.75	51.29	18.74
Merged-chr2-11441984-3	chr2	11441482	11442482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43482.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	128.14	85.71	57.35	116.73	90.04	70.73	95.06	83.13	63.08
Merged-chr4-134595250-3	chr4	134594760	134595760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-27409.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	73.79	63.13	68.45	57.35	39.19	106.9	83.44	78.71	68.07
Merged-chr3-153406409-3	chr3	153405914	153406914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-107765.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	48.62	57.14	38.85	41.83	37.32	24.92	43.3	35.82	26.23
Merged-chr6-134928744-3	chr6	134928247	134929247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037955)	promoter-TSS (NR_037955)	-345.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	96.68	88.93	99.89	91.09	62.98	94.85	103.51	91.97	89.93
Merged-chr19-17277047-1	chr19	17276547	17277547	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62458.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.29	2.3	0.0	0.67	4.67	1.61	144.7	155.64	96.8
Merged-chr7-88243251-3	chr7	88242749	88243749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34836.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	167.61	165.42	98.97	138.99	135.75	110.12	178.5	221.97	109.92
Merged-chr2-83941024-3	chr2	83940575	83941575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027964, exon 1 of 9)	exon (NM_027964, exon 1 of 9)	151.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	5.15	4.61	5.55	4.05	4.2	10.45	1.06	4.42	1.25
Merged-chr5-30888060-3	chr5	30887563	30888563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_122117)	promoter-TSS (NR_122117)	-789.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	79.52	82.02	62.9	58.7	55.51	66.71	85.55	92.86	52.46
Merged-chr15-76351213-3	chr15	76350728	76351728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	-66.0	NM_001164607	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	164.75	178.32	173.89	123.47	170.28	186.48	179.55	186.15	107.42
Merged-chr6-114457535-3	chr6	114457030	114458030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-992.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	88.67	86.63	48.1	103.23	69.51	93.24	89.78	99.93	74.94
Merged-chr17-57031856-4	chr17	57031328	57032328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010613)	promoter-TSS (NM_010613)	-321.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	78.37	77.41	77.7	86.36	50.85	60.28	68.65	56.16	54.33
Merged-chr2-75763464-3	chr2	75762952	75763952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58789.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	36.04	27.65	12.02	35.09	34.52	34.56	77.1	60.13	25.61
Merged-chr8-34744877-2	chr8	34744376	34745376	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62734.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.72	4.15	5.55	6.07	2.33	3.22	85.55	77.38	30.6
Merged-chr4-95106157-3	chr4	95105665	95106665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53943.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	19.45	17.05	24.05	33.06	24.26	7.23	14.79	8.84	8.74
Merged-chr7-128744861-3	chr7	128744359	128745359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029982)	promoter-TSS (NM_001029982)	-11.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	131.0	132.25	87.87	132.92	109.63	109.32	115.12	139.72	81.81
Merged-chr19-12445200-3	chr19	12444690	12445690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-15589.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	83.52	80.18	24.05	112.68	72.78	54.66	67.6	73.84	53.71
Merged-chr15-27926054-3	chr15	27925537	27926537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99811.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	279.73	229.01	94.35	215.23	234.65	122.98	185.89	186.15	79.94
Merged-chr11-46810708-3	chr11	46810203	46811203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178759)	promoter-TSS (NM_178759)	-96.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	108.69	122.11	77.7	120.77	111.96	135.04	153.15	167.14	76.19
Merged-chr10-25464451-3	chr10	25463959	25464959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 4 of 16)	intron (NM_001358754, intron 4 of 16)	56091.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	46.91	38.25	18.5	33.06	25.19	17.68	39.08	30.51	10.62
Merged-chr7-90021237-3	chr7	90020716	90021716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7943.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	115.55	121.19	63.82	118.75	83.51	97.26	104.56	107.0	91.18
Merged-chr12-108765955-3	chr12	108765464	108766464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27347.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	257.42	241.45	295.06	201.74	285.97	254.0	213.35	285.2	197.98
Merged-chr15-83430486-3	chr15	83429983	83430983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	2367.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	36.61	30.87	47.17	43.18	20.06	21.7	27.46	12.38	26.23
Merged-chr1-144002874-3	chr1	144002374	144003374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 2 of 4)	intron (NM_009061, intron 2 of 4)	1275.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	137.29	164.04	119.32	122.12	121.76	73.95	114.07	126.9	88.68
Merged-chr12-99942695-3	chr12	99942200	99943200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 14 of 15)	intron (NM_028354, intron 14 of 15)	-21799.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	134.43	87.09	72.15	90.41	87.24	55.46	50.7	53.06	43.09
Merged-chr4-99200203-3	chr4	99199717	99200717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	6070.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	180.2	183.85	86.95	157.21	153.95	138.25	247.15	311.73	140.52
Merged-chr10-19068518-3	chr10	19068015	19069015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53105.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	70.93	65.43	44.4	84.34	43.85	34.56	61.26	62.35	28.73
Merged-chr11-115060016-3	chr11	115059504	115060504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	2035.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	209.94	122.11	107.29	51.28	24.72	32.15	63.37	38.91	25.61
Merged-chr10-127266743-1	chr10	127266243	127267243	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027151, intron 1 of 13)	CpG	481.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	217.38	183.85	179.44	172.05	171.21	157.54	177.44	164.49	117.41
Merged-chr4-45084626-3	chr4	45084134	45085134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024142)	promoter-TSS (NM_001024142)	-30.0	NM_001024142	269529.0	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	9.72	7.83	5.55	10.12	17.73	11.25	16.9	9.73	7.49
Merged-chr16-95701961-3	chr16	95701460	95702460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	-447.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	316.92	275.55	193.32	288.78	287.84	250.78	210.18	335.16	128.03
Merged-chr6-83011454-1	chr6	83010954	83011954	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	22017.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	27.46	26.26	3.7	22.27	17.73	23.31	13.73	24.32	8.74
Merged-chr7-105811132-3	chr7	105810619	105811619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025301)	promoter-TSS (NM_025301)	-32.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	243.69	264.03	168.34	177.45	209.0	167.19	200.68	202.07	122.41
Merged-chr8-115494549-3	chr8	115494055	115495055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212339.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	8.58	9.22	1.85	11.47	7.93	11.25	3.17	4.42	4.37
Merged-chr6-125581432-3	chr6	125580931	125581931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	L1_Mur3|LINE|L1	28483.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	13.73	5.53	7.4	14.17	3.73	3.22	5.28	6.19	5.62
Merged-chrX-20425480-3	chrX	20424984	20425984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289684)	promoter-TSS (NM_001289684)	-204.0	NM_199317	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	38.33	28.57	19.42	33.74	32.66	32.96	29.57	15.92	24.36
Merged-chr11-61579643-3	chr11	61579093	61580093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010148)	promoter-TSS (NM_010148)	94.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	29.75	23.96	14.8	18.22	17.73	24.92	32.74	13.27	14.36
Merged-chr11-108351008-3	chr11	108350484	108351484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7096.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.15	7.37	0.0	10.8	1.4	4.82	3.17	6.63	6.25
Merged-chr6-83441735-3	chr6	83441244	83442244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183138)	promoter-TSS (NM_183138)	-11.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	33.18	16.13	39.77	37.11	24.26	28.94	28.52	13.27	14.99
Merged-chr6-113604760-3	chr6	113604255	113605255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133937)	promoter-TSS (NM_133937)	-17.0	NM_133937	101314.0	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	114.41	100.91	71.22	119.43	109.16	152.72	116.18	102.14	77.44
Merged-chr2-24975957-3	chr2	24975453	24976453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146251)	promoter-TSS (NM_146251)	-80.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	379.27	342.36	189.62	356.25	334.49	245.96	348.54	417.85	139.89
Merged-chr3-121171693-3	chr3	121171187	121172187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025637)	promoter-TSS (NM_025637)	8.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	92.67	60.36	49.95	95.14	77.91	81.18	60.2	58.81	33.72
Merged-chr2-121474028-3	chr2	121473542	121474542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081975)	promoter-TSS (NM_001081975)	-19.0	NM_001081975	100034361.0	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	68.65	67.27	68.45	50.6	56.45	70.73	55.98	56.6	58.08
Merged-chr15-57037346-3	chr15	57036852	57037852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227809.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	10.87	12.9	7.4	29.01	27.06	26.53	10.56	12.82	14.99
Merged-chr11-51606912-3	chr11	51606406	51607406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010448)	promoter-TSS (NM_010448)	-25.0	NM_010448	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	476.52	348.81	394.96	435.87	361.08	305.44	381.28	323.67	191.73
Merged-chr17-70850701-1	chr17	70850201	70851201	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	509.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	326.07	339.6	246.04	279.33	287.84	234.71	287.28	395.3	216.09
Merged-chr12-25101235-3	chr12	25100730	25101730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5138.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	167.61	144.23	144.29	165.31	164.68	156.74	155.26	162.28	114.91
Merged-chr2-90559122-3	chr2	90558626	90559626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	21521.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	120.7	140.54	129.49	111.33	72.78	129.41	106.67	132.21	124.28
Merged-chr7-74684189-3	chr7	74683731	74684731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-129451.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	47.48	60.82	30.52	29.69	38.25	45.82	66.54	72.96	40.59
Merged-chr11-116027966-3	chr11	116027473	116028473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-2343.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	284.88	259.88	164.64	329.94	257.05	189.69	262.99	370.98	175.49
Merged-chr10-39451280-3	chr10	39450778	39451778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81479.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	92.67	107.82	86.95	120.77	111.03	93.24	100.34	120.71	73.07
Merged-chr5-105595728-3	chr5	105595230	105596230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	76259.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	110.41	100.91	53.65	115.38	86.77	75.56	88.72	107.0	64.95
Merged-chr12-33170305-3	chr12	33169794	33170794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	22608.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	26.89	18.89	7.4	12.14	12.6	12.86	27.46	23.43	7.49
Merged-chr18-38296757-3	chr18	38296324	38297324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164621)	promoter-TSS (NM_001164621)	19.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	143.01	205.51	119.32	168.68	191.73	121.37	129.91	123.36	72.45
Merged-chr19-6921972-3	chr19	6921469	6922469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-161.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	157.31	93.08	103.59	189.6	96.1	98.87	148.92	141.49	44.34
Merged-chr1-118507438-3	chr1	118507007	118508007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 16 of 39)	intron (NM_001359330, intron 16 of 39)	-48242.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	30.32	41.01	37.0	26.99	23.79	36.97	33.8	31.84	29.35
Merged-chr5-136568953-3	chr5	136568463	136569463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-11653	-1473.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	20.02	11.98	5.55	19.57	17.26	10.45	17.96	19.01	8.12
Merged-chr9-58549088-3	chr9	58548588	58549588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8148.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	5.72	5.07	2.77	10.8	4.2	6.43	5.28	3.1	0.0
Merged-chr7-80947720-3	chr7	80947230	80948230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019951)	promoter-TSS (NM_019951)	-180.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	178.48	149.75	124.87	234.13	201.07	121.37	203.84	167.14	67.45
Merged-chr19-55840957-3	chr19	55840451	55841451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-54370.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	67.5	46.54	33.3	50.6	23.79	38.58	38.02	26.53	29.35
Merged-chr7-106617119-1	chr7	106616619	106617619	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277179, intron 1 of 2)	MMVL30-int|LTR|ERV1	27526.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.86	1.84	0.0	0.0	0.0	0.0	103.51	74.73	57.46
Merged-chr9-57561123-5	chr9	57560617	57561617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	CpG	173.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	277.45	289.83	187.77	301.6	260.31	200.95	269.33	302.44	134.9
Merged-chr2-102887670-2	chr2	102887188	102888188	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	13977.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	28.6	23.04	23.12	47.23	33.59	49.03	67.6	53.06	47.46
Merged-chr12-84174468-3	chr12	84174073	84175073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	19442.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	367.26	258.96	260.84	310.37	228.12	202.55	243.98	264.42	163.63
Merged-chr7-137437568-3	chr7	137437052	137438052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023140)	promoter-TSS (NM_023140)	-21.0	NM_001348093	30926.0	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	49.77	55.29	45.32	80.29	84.44	93.24	100.34	68.98	31.85
Merged-chr2-101628461-1	chr2	101627961	101628961	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009020, intron 2 of 2)	intron (NM_009020, intron 2 of 2)	525.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	42.33	48.84	42.55	31.04	35.92	36.17	38.02	36.26	28.1
Merged-chr5-4104517-3	chr5	4104015	4105015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020010, exon 1 of 10)	5' UTR (NM_020010, exon 1 of 10)	182.0	NM_020010	13121.0	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	24.03	27.65	40.7	43.18	53.65	45.82	45.42	36.26	21.86
Merged-chr1-72284321-3	chr1	72283836	72284836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175564)	promoter-TSS (NM_175564)	-15.0	NM_001356516	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	39.47	38.25	25.9	32.39	46.65	44.21	32.74	42.45	23.73
Merged-chr2-50296589-3	chr2	50296094	50297094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	207.0	NM_001348200	109129.0	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	213.38	180.17	124.87	188.92	161.88	159.15	186.94	151.66	99.92
Merged-chr13-67779685-3	chr13	67779192	67780192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028402)	promoter-TSS (NM_028402)	-1.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	56.06	58.52	39.77	77.59	69.04	57.87	229.19	278.57	103.67
Merged-chr5-137831716-3	chr5	137831214	137832214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 2 of 6)	MLTR14|LTR|ERV1	4564.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	54.35	31.79	58.27	33.74	25.19	57.07	42.25	38.03	53.08
Merged-chr15-50889347-3	chr15	50888847	50889847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-233.0	NR_035444	100316685.0		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	229.39	169.11	168.34	252.34	228.59	167.99	239.75	190.13	111.79
Merged-chr19-21894953-1	chr19	21894453	21895453	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116613.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	24.03	28.11	17.57	16.87	17.26	18.49	8.45	13.71	19.98
Merged-chr2-128709646-3	chr2	128709181	128710181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	10766.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	124.14	99.53	67.52	129.55	76.97	166.38	119.35	121.15	61.2
Merged-chr13-9149635-3	chr13	9149152	9150152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 8 of 17)	intron (NM_172585, intron 8 of 17)	55771.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	124.14	134.55	68.45	136.97	105.9	83.59	106.67	103.47	47.46
Merged-chr3-108445252-3	chr3	108444730	108445730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204979)	promoter-TSS (NM_001204979)	29.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	128.71	112.43	98.05	127.52	152.08	106.1	141.53	126.46	59.95
Merged-chr16-50445207-3	chr16	50444714	50445714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12748.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	10.3	2.76	7.4	6.75	4.2	4.82	5.28	10.61	0.0
Merged-chr6-108503828-3	chr6	108503320	108504320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	L1ME1|LINE|L1	14077.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	118.99	153.44	97.12	155.86	185.2	116.55	137.3	163.6	49.96
Merged-chr17-10599208-1	chr17	10598708	10599708	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	142992.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.72	6.91	3.7	10.12	11.66	5.63	7.39	5.75	6.25
Merged-chr17-45563401-2	chr17	45562881	45563881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-555.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	63.5	72.34	63.82	53.3	32.19	54.66	34.85	37.14	41.22
Merged-chr19-44931553-3	chr19	44931056	44932056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172638, intron 1 of 19)	CpG	437.0	NM_001081225	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	131.57	95.84	96.2	123.47	126.42	114.14	115.12	106.12	64.33
Merged-chr1-157412674-3	chr1	157412187	157413187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-92.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	64.64	40.09	60.12	54.65	39.65	81.18	74.99	34.93	44.97
Merged-chr6-8495353-3	chr6	8494844	8495844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13817.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	51.48	59.9	34.22	107.28	91.9	90.02	91.89	122.48	70.57
Merged-chr11-104469500-3	chr11	104469000	104470000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-639.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	22.31	10.6	9.25	43.86	41.05	37.78	36.97	14.15	7.49
Merged-chr7-19817629-3	chr7	19817136	19818136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	5119.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	103.54	90.77	79.55	99.86	64.38	62.7	118.29	104.79	70.57
Merged-chr17-47521752-3	chr17	47521273	47522273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	16722.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	42.9	33.18	36.07	51.95	46.18	49.03	40.14	25.65	23.11
Merged-chr2-153161727-2	chr2	153161236	153162236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	435.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	333.51	281.08	241.41	309.7	214.13	213.0	306.29	336.05	164.88
Merged-chr5-67600122-3	chr5	67599622	67600622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7761.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	12.59	11.52	5.55	14.84	6.53	6.43	4.22	5.31	1.25
Merged-chr10-17723545-1	chr10	17723045	17724045	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010828, intron 1 of 1)	CpG	317.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	129.28	119.8	109.14	112.0	100.77	121.37	124.63	107.0	115.54
Merged-chr1-154097862-3	chr1	154097359	154098359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-103328.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	79.52	78.79	68.45	68.15	62.98	71.54	67.6	66.77	64.33
Merged-chr17-5626504-3	chr17	5626010	5627010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133910.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	94.39	75.11	38.85	115.38	72.78	58.68	76.05	66.77	24.98
Merged-chr7-90457224-3	chr7	90456698	90457698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	10.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	80.09	74.65	58.27	72.87	78.37	92.44	91.89	90.64	39.97
Merged-chr8-111643915-3	chr8	111643413	111644413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358993, intron 1 of 3)	CpG	470.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	312.91	296.75	194.24	262.47	288.3	208.18	293.62	274.59	151.14
Merged-chr8-83442584-3	chr8	83442079	83443079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019708)	promoter-TSS (NM_019708)	83.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	18.88	9.68	7.4	21.59	13.53	12.86	16.9	21.22	17.49
Merged-chr19-7020279-3	chr19	7019757	7020757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	-788.0	NM_001362399	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	228.25	274.63	180.37	201.07	223.92	207.38	185.89	272.82	154.26
Merged-chr11-69837925-1	chr11	69837425	69838425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-600.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	79.52	52.53	36.07	69.5	45.72	34.56	62.31	47.31	23.73
Merged-chr4-3766561-3	chr4	3766065	3767065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MTD|LTR|ERVL-MaLR	51601.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	55.49	58.06	55.5	53.98	29.86	46.62	39.08	62.35	48.09
Merged-chr4-126228247-3	chr4	126227744	126228744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25534.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	70.36	53.91	60.12	66.8	44.32	86.01	84.49	57.04	59.95
Merged-chr15-58215438-3	chr15	58214917	58215917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026346)	promoter-TSS (NM_026346)	-525.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	313.49	336.83	246.04	335.33	320.49	343.22	309.46	352.85	180.49
Merged-chr2-73475858-3	chr2	73475387	73476387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	MLT1F2|LTR|ERVL-MaLR	9866.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	58.35	65.43	35.15	74.89	48.98	39.39	38.02	52.18	33.72
Merged-chr11-114890256-3	chr11	114889767	114890767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347654, exon 1 of 7)	5' UTR (NM_001347654, exon 1 of 7)	226.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	295.18	211.5	100.82	302.95	197.8	249.17	237.64	280.78	136.15
Merged-chr6-113330753-3	chr6	113330254	113331254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010957, intron 3 of 6)	ORR1A4|LTR|ERVL-MaLR	3778.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	46.34	23.5	23.12	25.64	24.72	29.74	15.84	22.55	24.98
Merged-chr6-120916894-3	chr6	120916385	120917385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-61.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	113.84	76.49	75.85	107.95	76.51	70.73	126.74	128.67	38.1
Merged-chr12-69502111-3	chr12	69501584	69502584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26534.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	139.01	102.75	104.52	198.37	133.42	134.23	130.97	137.07	71.82
Merged-chr14-31128411-3	chr14	31127909	31128909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308091, intron 1 of 1)	intron (NM_001308091, intron 1 of 1)	521.0	NM_001308466	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	153.31	131.78	132.27	173.4	152.55	150.31	156.32	182.62	92.43
Merged-chr5-110094534-3	chr5	110094043	110095043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5426.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	35.47	47.92	54.57	39.81	36.39	69.93	67.6	52.18	63.08
Merged-chr7-82648520-3	chr7	82648020	82649020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	8.0	NM_177894	330577.0	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	46.91	54.37	45.32	41.83	42.92	45.01	52.81	45.54	32.48
Merged-chr16-24859949-3	chr16	24859432	24860432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138077.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	36.04	52.53	16.65	52.63	43.39	37.78	52.81	46.43	24.36
Merged-chr1-10038064-3	chr1	10037571	10038571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026493)	promoter-TSS (NM_026493)	88.0	NR_102282	26754.0	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	295.75	361.25	221.06	253.69	241.18	244.35	326.36	287.85	184.24
Merged-chr8-79163064-3	chr8	79162568	79163568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	85515.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	62.35	53.45	43.47	89.06	65.78	49.03	41.19	33.6	7.49
Merged-chr17-21450334-3	chr17	21449848	21450848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-26.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	112.12	155.75	119.32	105.26	133.42	106.9	157.37	155.2	71.2
Merged-chr14-105177368-3	chr14	105176858	105177858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134077)	promoter-TSS (NM_134077)	-31.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	181.34	130.4	134.12	187.57	120.36	127.8	202.79	133.53	85.56
Merged-chr7-78847257-3	chr7	78846750	78847750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029585)	promoter-TSS (NM_029585)	-39.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	127.0	179.71	100.82	166.66	190.34	199.34	214.41	145.03	72.45
Merged-chr4-155841198-3	chr4	155840718	155841718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024263, intron 3 of 9)	CpG	1538.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	42.9	33.64	46.25	60.05	41.99	43.4	27.46	18.57	14.99
Merged-chr8-121947882-3	chr8	121947366	121948366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	27.46	37.32	26.82	36.43	55.98	56.27	69.71	39.35	32.48
Merged-chr19-40708333-3	chr19	40707816	40708816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	48546.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	91.53	100.45	84.17	125.5	80.71	110.12	77.1	118.06	64.33
Merged-chr1-91053405-1	chr1	91052905	91053905	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-39.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	143.59	153.44	144.29	128.87	120.83	159.95	153.15	175.54	82.44
Merged-chr18-49642931-3	chr18	49642413	49643413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112688.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	2.29	3.69	4.62	16.87	12.6	15.27	9.51	6.63	4.37
Merged-chr10-25331918-3	chr10	25331417	25332417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27881.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	90.96	116.58	59.2	130.9	126.89	93.24	97.17	93.74	46.84
Merged-chr9-108567485-3	chr9	108566986	108567986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023247)	promoter-TSS (NM_023247)	-144.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	533.15	438.21	411.6	416.3	354.55	450.93	380.23	401.05	276.67
Merged-chr2-39008071-3	chr2	39007568	39008568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028809)	promoter-TSS (NM_028809)	-71.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	134.43	120.26	95.27	119.43	116.63	111.73	127.8	128.67	69.32
Merged-chr5-86065635-3	chr5	86065120	86066120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-37.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	132.14	107.82	118.39	147.76	117.09	117.35	132.02	135.75	65.58
Merged-chr6-39206972-3	chr6	39206483	39207483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-210.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	280.88	197.68	204.41	275.28	194.53	187.28	214.41	182.62	151.76
Merged-chr12-102451701-3	chr12	102451193	102452193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11880.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	197.36	173.25	160.94	200.39	195.93	149.5	234.47	253.36	122.41
Merged-chr7-7295712-3	chr7	7295200	7296200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357104, intron 1 of 9)	intron (NM_001357104, intron 1 of 9)	3136.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	11.44	5.99	7.4	9.45	0.93	3.22	3.17	9.29	3.75
Merged-chr8-83165420-3	chr8	83164891	83165891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027758)	promoter-TSS (NM_027758)	39.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	476.52	486.13	308.93	432.49	550.48	336.79	333.75	393.09	205.47
Merged-chr12-85523915-3	chr12	85523423	85524423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50033.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	329.5	263.57	169.27	383.24	306.03	258.82	290.45	291.83	149.89
Merged-chr15-74957059-3	chr15	74956538	74957538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008529, intron 1 of 3)	intron (NM_008529, intron 1 of 3)	1932.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	163.61	171.41	89.72	143.04	150.22	116.55	201.73	223.74	94.93
Merged-chr14-75845847-3	chr14	75845320	75846320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	564.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	438.19	314.25	300.61	410.9	313.49	296.6	330.59	248.06	178.61
Merged-chr1-107583039-3	chr1	107582542	107583542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6964.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	32.61	45.62	24.97	33.06	24.72	36.17	17.96	17.24	14.36
Merged-chr4-62629655-3	chr4	62629149	62630149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	9977.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	64.07	46.08	64.75	59.38	24.26	37.78	42.25	46.87	26.23
Merged-chr4-116557591-3	chr4	116557098	116558098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-129.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	228.82	272.78	170.19	255.04	233.25	284.54	280.95	317.48	204.85
Merged-chr8-69716525-3	chr8	69716024	69717024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359086, exon 1 of 6)	5' UTR (NM_001359086, exon 1 of 6)	378.0	NM_001039967	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	517.71	587.5	361.66	384.59	501.5	353.67	405.58	477.1	272.29
Merged-chr12-85257462-3	chr12	85256972	85257972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-11487.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	213.95	181.55	135.04	159.23	144.62	110.12	97.17	129.11	68.7
Merged-chr9-48532903-3	chr9	48532402	48533402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37559.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	66.93	66.81	68.45	55.33	31.72	48.23	43.3	33.6	36.85
Merged-chr14-16244054-3	chr14	16243547	16244547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	-716.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	317.49	515.16	195.17	331.96	402.13	245.16	377.06	559.78	227.95
Merged-chr7-84689989-3	chr7	84689500	84690500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360577)	promoter-TSS (NM_001360577)	-43.0	NM_001360582	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	276.87	179.71	123.94	265.84	124.56	143.88	232.36	105.24	99.3
Merged-chr9-121314234-3	chr9	121313717	121314717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	16715.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	437.05	392.13	159.09	433.84	374.61	284.54	353.82	441.73	222.33
Merged-chr10-94378486-3	chr10	94377973	94378973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	66524.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	55.49	44.24	61.05	110.65	74.64	56.27	82.38	60.58	34.97
Merged-chr2-145934727-3	chr2	145934219	145935219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025820)	promoter-TSS (NM_025820)	-19.0	NM_025820	66877.0	Mm.248755	NM_025820	ENSMUSG00000001767	Crnkl1	1200013P10Rik|5730590A01Rik|C80326|crn	crooked neck pre-mRNA splicing factor 1	protein-coding	96.11	89.39	60.12	88.39	83.04	46.62	63.37	85.78	56.83
Merged-chr2-79966916-3	chr2	79966424	79967424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-58525.0	NM_001009978	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	27.46	29.49	17.57	49.93	41.52	45.01	43.3	46.43	29.35
Merged-chr8-106148117-3	chr8	106147636	106148636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2218.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	61.21	67.27	98.97	74.89	54.58	106.1	122.52	125.13	65.58
Merged-chr7-16308673-3	chr7	16308178	16309178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-905.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	147.59	120.73	78.62	116.73	69.51	64.3	145.75	171.12	68.7
Merged-chr15-102150909-3	chr15	102150419	102151419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146064, intron 1 of 14)	intron (NM_146064, intron 1 of 14)	344.0	NM_146064	223920.0	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	198.5	193.53	101.74	143.04	103.1	110.92	103.51	128.67	75.57
Merged-chr8-72570963-5	chr8	72570517	72571517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172396)	promoter-TSS (NM_172396)	31.0	NM_172396	66818.0	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	229.97	240.07	167.42	206.46	192.67	159.95	198.56	235.68	121.16
Merged-chr10-43856541-3	chr10	43856037	43857037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	30630.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	14.3	19.35	14.8	18.22	29.86	24.11	26.4	30.95	16.86
Merged-chr18-84088135-3	chr18	84087623	84088623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-35.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	188.78	164.5	214.59	180.15	125.49	237.92	209.12	160.06	144.89
Merged-chr1-154094489-3	chr1	154093994	154094994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106693.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	87.52	56.68	61.97	82.32	72.31	87.61	46.47	54.39	44.97
Merged-chr17-21515894-3	chr17	21515393	21516393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19646.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	21.74	15.21	20.35	20.24	13.53	32.15	25.35	18.57	18.11
Merged-chr6-122657898-3	chr6	122657400	122658400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31476.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	191.64	151.6	124.87	168.68	138.55	110.92	202.79	206.49	81.81
Merged-chr9-106908894-1	chr9	106908394	106909394	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153413, intron 46 of 52)	intron (NM_153413, intron 46 of 52)	-16956.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	6.29	2.76	11.1	4.05	5.13	1.61	58.09	45.54	11.87
Merged-chr4-101020240-3	chr4	101019724	101020724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48814.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	26.89	30.41	24.97	22.94	20.06	41.8	27.46	24.76	25.61
Merged-chr19-5894174-3	chr19	5893672	5894672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362045)	promoter-TSS (NM_001362045)	-44.0	NM_198634	332359.0	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	13.16	13.36	11.1	15.52	11.2	4.02	27.46	9.73	5.62
Merged-chr10-111544126-3	chr10	111543634	111544634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37848.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	16.59	19.35	12.02	21.59	13.53	19.29	36.97	14.59	12.49
Merged-chr9-22328013-3	chr9	22327561	22328561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2629.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	182.49	189.38	128.57	169.35	130.16	147.09	174.27	191.46	107.42
Merged-chr11-69696020-3	chr11	69695519	69696519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034097)	promoter-TSS (NM_001034097)	79.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	115.55	90.31	98.05	129.55	124.09	128.61	128.85	65.88	57.46
Merged-chr17-65730488-3	chr17	65729986	65730986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42266.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	144.73	135.01	96.2	177.45	126.42	122.18	127.8	149.45	103.67
Merged-chr2-144011399-3	chr2	144010899	144011899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024281)	promoter-TSS (NM_024281)	-136.0	NM_024281	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	230.54	196.75	165.57	216.58	108.23	140.66	174.27	123.81	119.91
Merged-chr3-116808235-3	chr3	116807753	116808753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-87.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	84.66	100.91	123.02	96.48	100.77	124.59	141.53	119.39	92.43
Merged-chr2-150675138-3	chr2	150674634	150675634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6894.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	48.62	32.72	40.7	60.05	36.85	34.56	41.19	45.54	11.24
Merged-chr11-76623456-3	chr11	76623000	76624000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45761.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	173.9	116.12	93.42	161.93	122.23	103.69	160.54	99.05	68.7
Merged-chr1-125560940-3	chr1	125560445	125561445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-57.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	149.31	152.52	145.22	261.12	180.07	236.31	258.77	209.15	118.66
Merged-chr7-141414185-3	chr7	141413695	141414695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172116)	promoter-TSS (NM_172116)	-70.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	30.32	24.42	33.3	28.34	15.86	50.64	41.19	35.37	28.1
Merged-chr8-115423896-3	chr8	115423397	115424397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	282997.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	96.11	128.1	58.27	103.91	109.16	58.68	86.61	82.24	48.09
Merged-chr15-102406025-4	chr15	102405469	102406469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-347.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	236.26	106.44	95.27	195.67	81.17	86.01	144.7	91.97	53.08
Merged-chr8-39674384-1	chr8	39673884	39674884	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31706.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	12.59	10.14	5.55	16.87	18.66	16.08	9.51	6.19	5.0
Merged-chr7-92670070-3	chr7	92669573	92670573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029078)	promoter-TSS (NM_029078)	-161.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	187.63	177.86	158.17	184.2	174.47	139.86	153.15	149.89	113.66
Merged-chr4-137388563-3	chr4	137388045	137389045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21246.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	258.57	297.21	284.89	275.96	245.38	360.9	279.89	377.17	189.86
Merged-chr8-57487952-3	chr8	57487455	57488455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	-8.0	NR_126553	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	164.18	115.2	93.42	172.05	145.08	128.61	145.75	137.51	99.92
Merged-chr16-28929997-1	chr16	28929497	28930497	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177718)	promoter-TSS (NM_177718)	-299.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	12.01	5.53	9.25	8.77	5.13	0.8	5.28	0.44	1.25
Merged-chr4-94603193-3	chr4	94602702	94603702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172695)	promoter-TSS (NM_172695)	45.0	NM_172695	18786.0	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	343.23	409.18	295.06	322.51	420.32	272.48	320.02	367.44	214.84
Merged-chr11-20333223-1	chr11	20332723	20333723	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-510.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	38.33	41.47	48.1	57.35	42.45	69.13	53.87	54.39	37.47
Merged-chr6-91877978-3	chr6	91877490	91878490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172730)	promoter-TSS (NM_172730)	-63.0	NM_172730	232236.0	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	96.68	123.49	86.95	77.59	83.97	75.56	103.51	114.52	63.08
Merged-chr5-144254627-1	chr5	144254127	144255127	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-598.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	29.75	28.11	45.32	41.16	33.12	43.4	61.26	50.41	24.98
Merged-chr6-129333981-3	chr6	129333487	129334487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2206.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	22.88	17.05	9.25	38.46	17.73	8.04	20.07	19.46	25.61
Merged-chr5-114774718-3	chr5	114774215	114775215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	268.0	NR_027872	67642.0	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	272.87	135.93	173.89	259.09	162.34	203.36	253.48	184.83	113.66
Merged-chr4-141874336-3	chr4	141873816	141874816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	604.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	342.09	308.26	306.16	269.89	250.05	262.04	352.77	309.52	196.1
Merged-chr10-61475744-3	chr10	61475286	61476286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153542)	promoter-TSS (NM_153542)	-47.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	21.17	10.6	9.25	24.96	14.93	15.27	28.52	21.67	21.23
Merged-chr17-35821201-3	chr17	35820704	35821704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-509.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	90.96	71.42	41.62	76.92	51.78	48.23	83.44	65.44	62.45
Merged-chr15-96700225-3	chr15	96699711	96700711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-483.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	94.39	72.34	37.92	98.51	66.71	46.62	83.44	55.27	30.6
Merged-chr19-40678691-3	chr19	40678172	40679172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	18902.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	279.73	266.33	154.47	273.26	233.25	217.02	239.75	327.2	110.54
Merged-chr4-148140388-6	chr4	148139876	148140876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027985)	promoter-TSS (NM_027985)	-114.0	NM_027985	71890.0	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	157.89	202.28	156.32	188.25	179.61	159.95	221.8	246.73	131.78
Merged-chr13-111725543-3	chr13	111725060	111726060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	39382.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	100.11	106.44	53.65	38.46	23.33	17.68	90.83	60.58	24.98
Merged-chr3-61592524-3	chr3	61592027	61593027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	228020.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	13.73	12.9	2.77	10.8	5.6	11.25	12.67	6.19	9.99
Merged-chr2-167649523-3	chr2	167649080	167650080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11964.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	60.07	35.48	16.65	73.54	47.58	52.25	49.64	22.11	23.73
Merged-chr17-23993740-3	chr17	23993239	23994239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133731, exon 6 of 6)	3' UTR (NM_133731, exon 6 of 6)	4361.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	28.6	20.27	19.42	29.01	15.39	16.08	27.46	43.77	15.61
Merged-chr7-113722189-3	chr7	113721680	113722680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-43818.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	11.44	6.45	2.77	8.77	8.4	8.84	11.62	0.88	7.49
Merged-chr1-121440806-3	chr1	121440293	121441293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 3 of 23)	MTD|LTR|ERVL-MaLR	9726.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	51.48	65.89	83.25	43.86	35.92	74.75	39.08	26.53	46.22
Merged-chr17-26561461-3	chr17	26560945	26561945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026170)	promoter-TSS (NM_026170)	-67.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	117.27	89.85	74.92	127.52	83.51	82.79	141.53	92.86	71.2
Merged-chr13-30659932-3	chr13	30659433	30660433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037955)	promoter-TSS (NM_001037955)	-126.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	239.69	170.95	158.17	268.54	146.48	178.44	253.48	196.32	116.79
Merged-chr9-109914417-3	chr9	109913899	109914899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-17375.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	40.62	45.16	31.45	31.71	23.33	34.56	32.74	19.46	42.47
Merged-chr5-150592697-3	chr5	150592166	150593166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1859.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	153.88	156.67	92.5	153.16	117.09	127.0	126.74	166.25	94.3
Merged-chr7-139273528-3	chr7	139273025	139274025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25043.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	12.59	17.51	12.95	14.17	6.06	20.9	24.29	13.71	18.11
Merged-chr1-171223380-1	chr1	171222880	171223880	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-866.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	64.64	42.39	44.4	99.86	41.52	36.17	191.17	126.46	101.8
Merged-chr1-88567384-3	chr1	88566855	88567855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	15838.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	71.51	68.66	37.92	79.62	61.58	55.46	67.6	91.53	47.46
Merged-chr9-44234987-3	chr9	44234465	44235465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-919.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	116.13	116.12	73.07	92.44	91.44	78.77	120.41	153.43	68.07
Merged-chr2-51972954-3	chr2	51972465	51973465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001141948, exon 1 of 8)	5' UTR (NM_001141948, exon 1 of 8)	243.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	169.9	194.91	127.64	217.93	283.17	224.26	274.61	307.75	180.49
Merged-chr15-102279501-3	chr15	102279031	102280031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134100)	promoter-TSS (NM_134100)	75.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	124.71	103.68	79.55	159.91	134.82	127.0	175.33	118.94	81.19
Merged-chr1-72307553-3	chr1	72307068	72308068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357520, exon 1 of 21)	5' UTR (NM_001357520, exon 1 of 21)	147.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	54.35	51.61	24.97	39.81	55.05	45.82	63.37	80.03	28.1
Merged-chr16-18811687-3	chr16	18811108	18812108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028403)	promoter-TSS (NR_028403)	364.0	NM_001161623	12544.0	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	168.76	189.84	87.87	152.49	161.88	95.65	155.26	177.75	85.56
Merged-chr3-19628220-3	chr3	19627706	19628706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16254.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	298.04	331.3	253.44	338.03	290.17	254.8	316.86	424.48	155.51
Merged-chr19-11965542-3	chr19	11964998	11965998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033174)	promoter-TSS (NM_001033174)	-346.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	60.07	57.6	85.1	58.03	31.72	65.11	74.99	50.41	44.97
Merged-chr11-11540768-1	chr11	11540268	11541268	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51502.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	6.29	11.52	8.32	4.72	9.8	0.8	24.29	22.55	13.12
Merged-chr19-29948396-3	chr19	29947886	29948886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164724, intron 1 of 7)	intron (NM_001164724, intron 1 of 7)	2596.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	6.86	2.3	5.55	5.4	4.67	4.82	6.34	4.86	3.75
Merged-chr8-60982752-1	chr8	60982252	60983252	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173873, intron 1 of 12)	CpG	559.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	217.95	240.07	125.79	223.33	227.66	202.55	220.74	280.33	144.27
Merged-chr15-58135162-3	chr15	58134679	58135679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-97.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	147.02	196.75	141.52	165.31	212.26	106.9	134.14	165.81	96.18
Merged-chr17-27907727-3	chr17	27907223	27908223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1519.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	98.39	88.93	76.77	95.14	74.64	61.09	76.05	86.66	48.09
Merged-chr3-107778167-3	chr3	107777635	107778635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17666.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	27.46	14.75	7.4	16.87	6.06	12.86	3.17	7.52	8.74
Merged-chr9-22070882-3	chr9	22070350	22071350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040406)	promoter-TSS (NR_040406)	-152.0	NR_040406	100503652.0	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	193.35	176.02	155.39	157.21	150.68	130.21	145.75	113.64	115.54
Merged-chr1-180314892-3	chr1	180314388	180315388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15588.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	92.1	62.67	37.92	33.74	19.59	23.31	26.4	22.55	10.62
Merged-chr8-126872765-3	chr8	126872265	126873265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	23745.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	322.64	227.17	150.77	262.47	200.6	157.54	231.3	308.19	153.01
Merged-chr17-47225504-3	chr17	47225006	47226006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	AT_rich|Low_complexity|Low_complexity	-4724.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	102.4	130.4	101.74	107.95	106.36	147.09	111.96	141.49	100.55
Merged-chr2-151039400-3	chr2	151038890	151039890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026086)	promoter-TSS (NM_026086)	-11.0	NM_026086	67311.0	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	84.66	89.85	98.05	97.16	115.23	100.47	106.67	66.77	38.72
Merged-chr3-108571645-3	chr3	108571223	108572223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025444)	promoter-TSS (NM_025444)	24.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	216.24	193.07	106.37	151.14	147.42	112.53	181.66	202.51	86.81
Merged-chr5-64229168-3	chr5	64228656	64229656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	MLT1F2|LTR|ERVL-MaLR	-1201.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	46.34	58.06	25.9	73.54	56.45	67.52	74.99	76.05	44.34
Merged-chr14-10453500-1	chr14	10453000	10454000	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308286)	promoter-TSS (NM_001308286)	-42.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	18.31	12.44	3.7	14.17	13.06	6.43	17.96	10.61	9.99
Merged-chr5-150891748-3	chr5	150891264	150892264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-60843.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	21.17	3.23	7.4	16.19	8.4	22.51	17.96	8.84	9.37
Merged-chr17-8195819-3	chr17	8195302	8196302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001197046, exon 13 of 13)	3' UTR (NM_001197046, exon 13 of 13)	30284.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	53.77	80.18	49.02	51.95	47.12	38.58	53.87	41.12	33.72
Merged-chr19-40588496-3	chr19	40588001	40589001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-38.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	56.63	54.37	55.5	41.16	36.39	30.54	87.66	130.0	49.34
Merged-chr13-40922518-3	chr13	40922037	40923037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	4903.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	24.03	19.35	9.25	20.92	30.79	25.72	26.4	14.15	6.87
Merged-chr13-51734793-3	chr13	51734300	51735300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	58947.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	11.44	8.75	11.1	10.8	10.26	0.0	14.79	11.05	6.25
Merged-chrX-85719479-3	chrX	85718979	85719979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 12 of 19)	L3|LINE|CR1	57340.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	8.58	12.44	12.95	24.29	15.39	24.11	16.9	10.61	23.11
Merged-chr7-16286342-3	chr7	16285847	16286847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136471, intron 1 of 13)	CpG	448.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	267.15	166.34	216.44	253.02	164.68	191.3	213.35	165.81	120.53
Merged-chr11-77793401-3	chr11	77792896	77793896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7902.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	94.39	89.85	79.55	107.95	79.77	86.01	80.27	99.05	58.71
Merged-chr5-43737153-1	chr5	43736653	43737653	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 35 of 37)	intron (NM_001359906, intron 35 of 37)	44996.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	8.01	6.45	1.85	44.53	37.79	47.42	5.28	3.54	3.75
Merged-chr6-65137922-3	chr6	65137417	65138417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019455, intron 2 of 5)	intron (NM_019455, intron 2 of 5)	6813.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	106.4	105.98	72.15	86.36	112.43	78.77	141.53	122.92	84.94
Merged-chr8-84220296-3	chr8	84219805	84220805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-11398.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	173.33	133.17	77.7	134.94	74.64	60.28	79.21	94.62	64.33
Merged-chr3-130873965-3	chr3	130873476	130874476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143578.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	102.97	82.02	55.5	110.65	96.1	77.16	48.58	62.79	41.22
Merged-chr1-151817077-3	chr1	151816562	151817562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311165, intron 20 of 20)	intron (NM_001311165, intron 20 of 20)	61688.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	70.93	65.89	52.72	82.99	48.98	54.66	79.21	80.92	53.08
Merged-chr15-62056609-3	chr15	62056112	62057112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	17355.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	199.65	179.71	147.99	172.73	157.21	175.23	166.88	191.02	91.81
Merged-chr5-52424115-3	chr5	52423722	52424722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-16937.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	14.87	18.89	12.95	16.87	7.46	12.86	13.73	6.19	18.11
Merged-chr18-33213939-3	chr18	33213397	33214397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-35.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	79.52	105.06	80.47	59.38	51.32	45.82	50.7	58.81	31.23
Merged-chr2-91963742-3	chr2	91963267	91964267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138306)	promoter-TSS (NM_138306)	-204.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	129.28	70.5	74.92	101.21	55.51	71.54	119.35	62.35	56.21
Merged-chr13-30749221-3	chr13	30748733	30749733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013674)	promoter-TSS (NM_013674)	0.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	98.39	88.01	29.6	100.53	81.64	65.11	80.27	123.81	41.22
Merged-chr14-77036758-3	chr14	77036255	77037255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310648)	promoter-TSS (NM_001310648)	-17.0	NM_001310648	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	371.26	319.32	204.41	305.65	221.59	189.69	412.97	344.45	209.22
Merged-chr2-18998245-3	chr2	18997744	18998744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355149)	promoter-TSS (NM_001355149)	-75.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	93.24	94.46	122.09	85.01	84.44	88.42	81.33	79.59	73.69
Merged-chr10-71238134-3	chr10	71237627	71238627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009360)	promoter-TSS (NM_009360)	-83.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	53.2	64.51	32.37	70.17	76.51	49.83	52.81	67.65	33.72
Merged-chr19-47732158-2	chr19	47731662	47732662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026377, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	406.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	116.7	105.98	85.1	101.21	89.57	108.51	74.99	76.94	37.47
Merged-chr1-171619217-3	chr1	171618725	171619725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11815.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	122.42	104.14	91.57	146.41	137.15	135.04	121.46	175.1	97.43
Merged-chr2-117358054-3	chr2	117357560	117358560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15183.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	56.06	30.41	22.2	29.69	16.79	8.04	40.14	28.3	16.86
Merged-chr18-84762794-3	chr18	84762279	84763279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	18712.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	1.72	3.69	0.0	8.1	4.67	2.41	4.22	0.44	5.0
Merged-chr7-122034506-3	chr7	122034025	122035025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026140, exon 9 of 9)	3' UTR (NM_026140, exon 9 of 9)	-13327.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	7.44	7.37	11.1	12.82	5.13	4.82	8.45	2.65	2.5
Merged-chr2-84623971-3	chr2	84623465	84624465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	25515.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	132.14	147.91	69.37	158.56	98.9	110.12	130.97	137.51	83.69
Merged-chr10-34297466-3	chr10	34296966	34297966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030203)	promoter-TSS (NM_030203)	45.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	21.17	17.05	5.55	24.96	28.46	6.43	19.01	16.36	6.87
Merged-chr14-75185982-3	chr14	75185513	75186513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	49588.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	113.84	99.07	61.05	91.76	54.58	81.18	108.79	90.2	71.2
Merged-chr9-110994847-3	chr9	110994344	110995344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-5131.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	28.03	22.58	29.6	27.66	22.39	24.92	43.3	28.74	23.73
Merged-chr19-6084982-3	chr19	6084468	6085468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026410)	promoter-TSS (NM_026410)	7.0	NM_001356994	81909.0	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	-	zinc finger like protein 1	protein-coding	141.3	130.4	85.1	116.73	81.17	73.14	166.88	149.45	79.94
Merged-chr19-5802569-3	chr19	5802077	5803077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	95.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	241.98	223.94	160.94	220.63	191.27	176.83	240.81	360.37	128.65
Merged-chr5-125179287-3	chr5	125178773	125179773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-59.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	109.26	104.14	138.74	94.46	87.24	135.04	145.75	162.28	133.65
Merged-chr11-5788457-3	chr11	5787943	5788943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-40.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	500.55	511.01	411.6	421.7	438.05	347.24	411.91	532.37	287.28
Merged-chr16-93034176-3	chr16	93033677	93034677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208103.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	98.39	69.12	70.3	86.36	48.05	49.03	54.92	55.27	68.7
Merged-chr4-21776265-3	chr4	21775764	21776764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-6.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	85.24	85.71	79.55	77.59	92.84	116.55	143.64	121.6	46.84
Merged-chr2-11708620-3	chr2	11708145	11709145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	2933.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	80.66	71.42	93.42	79.62	58.31	52.25	48.58	45.54	58.71
Merged-chr11-74838579-3	chr11	74838088	74839088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	CpG	7664.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	552.6	526.22	259.91	524.26	475.37	294.19	404.52	561.99	206.72
Merged-chr7-15922466-3	chr7	15921974	15922974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009156)	promoter-TSS (NM_009156)	-103.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	181.34	153.9	136.89	225.36	179.14	158.35	234.47	216.66	134.27
Merged-chr13-5604361-3	chr13	5603842	5604842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	253750.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	55.49	51.15	53.65	83.66	71.84	74.75	33.8	52.62	61.2
Merged-chr13-21940442-3	chr13	21939931	21940931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4663.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	32.04	29.95	13.87	25.64	23.33	16.88	27.46	35.37	11.24
Merged-chr14-102981392-2	chr14	102980883	102981883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1249.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	189.35	230.85	232.16	168.0	131.09	169.6	228.14	208.26	190.48
Merged-chr3-90079530-3	chr3	90079044	90080044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293749)	promoter-TSS (NM_001293749)	23.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	169.9	184.31	174.82	97.83	111.5	145.49	113.01	158.3	116.16
Merged-chr18-36561307-3	chr18	36560804	36561804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175375, intron 1 of 33)	CpG-6857	701.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	216.81	262.19	194.24	205.11	266.38	184.07	288.34	314.38	168.0
Merged-chr12-111441777-3	chr12	111441297	111442297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-864.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	284.31	248.36	175.74	287.43	244.45	223.45	235.53	319.69	180.49
Merged-chr13-23555102-3	chr13	23554604	23555604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145713)	promoter-TSS (NM_145713)	72.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	59.49	71.88	81.4	47.9	49.92	65.11	73.93	110.1	86.18
Merged-chr3-105036511-3	chr3	105036032	105037032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 2 of 5)	intron (NM_030249, intron 2 of 5)	16421.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	72.08	64.51	57.35	49.25	41.05	53.85	52.81	45.1	48.71
Merged-chr13-21531013-3	chr13	21530425	21531425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001251834, intron 1 of 1)	CpG	189.0	NM_139141	93681.0	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	77.23	63.13	42.55	66.12	69.51	85.2	100.34	64.56	52.46
Merged-chr4-135182054-3	chr4	135181573	135182573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61428.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	28.03	25.34	37.92	23.62	12.13	9.65	8.45	11.94	4.37
Merged-chr2-49452981-3	chr2	49452479	49453479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	intron (NM_172663, intron 1 of 13)	1493.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	67.5	65.89	33.3	47.23	66.24	57.87	79.21	66.77	43.09
Merged-chr9-66131626-3	chr9	66131042	66132042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4931.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	26.31	27.65	47.17	31.04	23.79	60.28	30.63	27.86	46.84
Merged-chr5-3490566-3	chr5	3490063	3491063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-53270.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	86.38	82.48	95.27	95.14	118.49	119.76	85.55	94.62	72.45
Merged-chr16-55966374-3	chr16	55965912	55966912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024218, exon 1 of 6)	5' UTR (NM_024218, exon 1 of 6)	137.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	151.02	135.47	58.27	147.09	145.08	98.06	110.9	104.79	69.32
Merged-chr15-36609142-3	chr15	36608657	36609657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008774)	promoter-TSS (NM_008774)	-184.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	191.07	182.01	180.37	188.92	163.28	129.41	194.34	202.95	111.79
Merged-chr11-50038980-3	chr11	50038499	50039499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	13668.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	52.63	48.84	49.95	33.06	28.46	45.01	42.25	42.01	38.72
Merged-chr9-116084216-3	chr9	116083713	116084713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	91150.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	205.94	236.84	168.34	200.39	241.65	231.49	214.41	252.04	124.91
Merged-chr5-90892848-1	chr5	90892348	90893348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_008176, exon 4 of 4)	3' UTR (NM_008176, exon 4 of 4)	1603.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	6.29	6.45	3.7	8.77	10.26	4.82	5.28	4.86	3.75
Merged-chr2-27411903-3	chr2	27411418	27412418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	15690.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	94.96	98.15	78.62	92.44	46.65	73.14	103.51	91.53	64.95
Merged-chr3-58583227-1	chr3	58582727	58583727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040396, intron 1 of 5)	intron (NM_001040396, intron 1 of 5)	6591.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	20.59	11.52	7.4	8.1	4.2	11.25	1.06	4.42	13.74
Merged-chrX-20931577-3	chrX	20931083	20932083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008823)	promoter-TSS (NM_008823)	-28.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	92.1	103.22	71.22	80.29	74.17	76.36	125.69	132.65	61.2
Merged-chr17-15826232-2	chr17	15825737	15826737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178615, exon 1 of 3)	5' UTR (NM_178615, exon 1 of 3)	349.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	95.53	90.77	107.29	89.74	85.84	66.71	103.51	87.99	68.7
Merged-chr18-76238806-1	chr18	76238306	76239306	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2895.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	6.86	7.83	1.85	3.37	4.67	1.61	8.45	12.38	9.37
Merged-chr15-64185393-1	chr15	64184893	64185893	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	Lx9|LINE|L1	-124945.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	17.73	26.26	25.9	19.57	22.86	25.72	64.43	65.88	29.35
Merged-chr17-35126444-3	chr17	35125943	35126943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033477)	promoter-TSS (NM_033477)	41.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	206.51	214.73	170.19	182.17	178.67	254.8	163.71	234.79	128.03
Merged-chr2-79255002-4	chr2	79254534	79255534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010576)	promoter-TSS (NM_010576)	-392.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	137.86	128.1	128.57	151.81	97.03	106.9	115.12	103.91	90.56
Merged-chr1-74505930-3	chr1	74505439	74506439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	-118.0	NM_001310662	319651.0	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	156.17	182.47	93.42	122.8	130.16	80.38	119.35	119.83	84.94
Merged-chr2-164455049-3	chr2	164454544	164455544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5927.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	53.2	34.56	23.12	40.48	32.19	25.72	24.29	26.09	23.73
Merged-chr13-113618504-3	chr13	113618023	113619023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130796)	promoter-TSS (NM_130796)	41.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	285.45	157.59	203.49	265.84	145.55	232.29	208.07	156.09	135.52
Merged-chr2-132102876-3	chr2	132102390	132103390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	42218.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	451.92	431.29	243.26	464.21	460.91	297.4	383.4	604.88	198.6
Merged-chr3-121693464-3	chr3	121692984	121693984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22721.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	42.9	36.86	32.37	54.65	30.79	45.82	81.33	76.49	38.1
Merged-chr10-67097095-5	chr10	67096515	67097515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204915)	promoter-TSS (NM_001204915)	-27.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	294.04	201.36	172.04	367.72	281.3	202.55	292.56	235.68	114.29
Merged-chr6-87542148-3	chr6	87541658	87542658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8899.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	216.81	162.2	114.69	214.56	124.56	142.27	204.9	215.78	120.53
Merged-chr10-118709844-3	chr10	118709338	118710338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153313.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	33.75	26.26	11.1	54.65	35.45	52.25	34.85	31.84	14.99
Merged-chr15-98985367-1	chr15	98984867	98985867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-598.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	405.59	360.79	267.31	414.28	274.77	247.57	399.24	402.81	224.21
Merged-chr8-120589291-3	chr8	120588800	120589800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-225.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	32.61	22.12	29.6	20.24	23.33	37.78	30.63	20.34	21.86
Merged-chr17-88118943-3	chr17	88118460	88119460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	65.21	58.98	45.32	70.85	53.18	71.54	47.53	78.71	46.84
Merged-chr6-134983693-3	chr6	134983192	134984192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001109914, exon 2 of 2)	exon (NM_001109914, exon 2 of 2)	1691.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	17.73	2.76	10.17	13.49	5.13	5.63	5.28	6.19	6.25
Merged-chr1-174040951-3	chr1	174040450	174041450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146717)	promoter-TSS (NM_146717)	-983.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	78.37	59.9	42.55	115.38	101.23	74.75	104.56	106.12	68.07
Merged-chr14-14345715-3	chr14	14345202	14346202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-793.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	268.29	188.0	116.54	144.39	84.9	65.11	181.66	138.4	69.32
Merged-chrX-93889544-3	chrX	93889041	93890041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57446.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	223.67	235.0	117.47	224.68	230.46	129.41	220.74	270.61	101.8
Merged-chr17-65931163-2	chr17	65930657	65931657	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023053, intron 3 of 4)	intron (NM_023053, intron 3 of 4)	20030.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	5.72	6.45	6.47	8.1	3.73	4.02	8.45	3.54	10.62
Merged-chr7-140128058-3	chr7	140127562	140128562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153783, intron 3 of 6)	intron (NM_153783, intron 3 of 6)	2377.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	56.63	84.32	48.1	49.93	59.25	71.54	53.87	80.47	56.83
Merged-chr18-62180026-3	chr18	62179533	62180533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007420)	promoter-TSS (NM_007420)	-52.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	262.0	225.78	167.42	211.19	212.73	176.03	214.41	200.3	150.51
Merged-chr17-35739784-3	chr17	35739299	35740299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32651.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	57.21	35.94	26.82	60.72	14.0	14.47	66.54	84.45	22.48
Merged-chr6-42339428-3	chr6	42338903	42339903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10425.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	56.63	53.91	40.7	64.77	42.92	47.42	38.02	54.83	38.72
Merged-chr10-77565965-3	chr10	77565469	77566469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008404)	TTS (NM_008404)	-15686.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	62.35	43.31	54.57	41.16	39.19	37.78	52.81	67.21	33.1
Merged-chr3-94612472-3	chr3	94611971	94612971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011656)	TTS (NM_011656)	-29755.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	54.35	56.22	41.62	63.42	60.65	58.68	43.3	38.47	7.49
Merged-chr3-108840278-1	chr3	108839778	108840778	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011504, intron 1 of 18)	CpG	224.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	98.97	92.62	98.05	103.91	83.04	98.87	126.74	107.45	81.81
Merged-chr1-163403737-3	chr1	163403237	163404237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132627)	promoter-TSS (NR_132627)	-68.0	NM_178883	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	22.88	11.52	16.65	27.66	14.93	22.51	21.12	18.13	7.49
Merged-chr4-123996006-3	chr4	123995501	123996501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78568.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	43.48	16.13	9.25	53.98	40.12	55.46	31.69	34.49	14.99
Merged-chr6-108829907-3	chr6	108829418	108830418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	1277.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	61.78	92.16	52.72	93.11	60.18	50.64	111.96	112.31	48.09
Merged-chr2-125859112-3	chr2	125858621	125859621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009939)	promoter-TSS (NM_009939)	12.0	NM_175154	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	120.13	143.3	71.22	106.61	94.7	82.79	108.79	69.42	64.33
Merged-chr11-48871480-3	chr11	48870986	48871986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008326)	promoter-TSS (NM_008326)	-66.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	306.05	336.83	201.64	253.69	269.18	173.62	292.56	306.42	163.0
Merged-chr9-123021307-3	chr9	123020846	123021846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	20.0	NM_001164823	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	38.9	48.84	40.7	64.77	37.79	46.62	40.14	39.35	32.48
Merged-chr6-115037876-3	chr6	115037373	115038373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026894)	promoter-TSS (NM_026894)	1.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	10.87	11.98	12.02	35.09	17.73	22.51	35.91	24.32	6.25
Merged-chr13-52031613-3	chr13	52031063	52032063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65178.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	52.06	56.22	55.5	38.46	36.85	78.77	48.58	54.39	36.85
Merged-chr15-38535540-3	chr15	38535058	38536058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16292.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	9.15	5.99	2.77	9.45	6.53	4.82	9.51	12.38	3.75
Merged-chr14-54405444-3	chr14	54404944	54405944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L1M2|LINE|L1	4028.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	88.67	78.79	68.45	143.71	88.64	95.65	89.78	55.27	28.73
Merged-chr2-72838228-3	chr2	72837729	72838729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24512.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	38.33	23.96	20.35	29.69	20.06	15.27	64.43	61.9	16.86
Merged-chr3-79531915-3	chr3	79531415	79532415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	35764.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	121.85	105.52	86.02	144.39	109.16	109.32	132.02	162.28	71.82
Merged-chr17-12960601-3	chr17	12960097	12961097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009338, intron 1 of 8)	CpG	128.0	NM_009338	110460.0	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	70.93	55.75	79.55	68.15	81.64	84.4	96.11	55.71	53.08
Merged-chr7-128063485-3	chr7	128062984	128063984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 1 of 29)	intron (NM_008401, intron 1 of 29)	844.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	52.06	58.52	40.7	45.88	41.05	47.42	30.63	30.51	38.72
Merged-chr16-85285579-2	chr16	85285086	85286086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111879.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	20.59	16.13	24.97	8.77	5.6	0.0	26.4	19.46	21.86
Merged-chr8-27174705-3	chr8	27174198	27175198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-52.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	77.8	54.37	68.45	50.6	53.18	69.13	53.87	44.22	31.23
Merged-chr1-165634594-3	chr1	165634090	165635090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347128)	promoter-TSS (NM_001347128)	-49.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	98.39	40.55	37.92	105.93	45.72	49.03	60.2	37.58	27.48
Merged-chr15-93337086-3	chr15	93336656	93337656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028315)	promoter-TSS (NR_028315)	-221.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	166.47	115.2	64.75	138.32	99.83	51.44	201.73	71.19	49.34
Merged-chr11-32619693-3	chr11	32619194	32620194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22861.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	12.01	11.06	12.02	10.8	7.0	5.63	19.01	15.92	7.49
Merged-chr2-27714378-3	chr2	27713884	27714884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	3801.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	191.07	229.01	203.49	205.79	206.2	237.92	168.99	204.28	141.14
Merged-chr15-33083217-3	chr15	33082727	33083727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018755)	promoter-TSS (NM_018755)	98.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	96.11	148.37	86.02	141.69	162.81	126.19	124.63	161.83	74.32
Merged-chr12-69423010-3	chr12	69422509	69423509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50859.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	83.52	70.04	49.95	100.53	77.91	87.61	27.46	17.24	39.97
Merged-chr10-53434872-3	chr10	53434376	53435376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24994.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	57.21	38.25	57.35	74.89	53.18	65.91	98.23	114.08	49.96
Merged-chr13-112012850-1	chr13	112012350	112013350	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144914.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.44	4.15	1.85	16.87	12.13	11.25	5.28	3.1	2.5
Merged-chr13-35783800-3	chr13	35783309	35784309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	42407.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	57.21	66.35	34.22	49.25	49.45	44.21	59.15	61.46	27.48
Merged-chr5-138116972-3	chr5	138116473	138117473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011757)	promoter-TSS (NM_011757)	68.0	NM_001044705	22697.0	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	101.83	123.49	87.87	85.01	118.96	97.26	100.34	104.35	87.43
Merged-chr16-5234154-1	chr16	5233654	5234654	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145362, intron 1 of 12)	intron (NM_145362, intron 1 of 12)	533.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	138.44	139.62	101.74	156.53	164.21	125.39	170.05	139.28	66.2
Merged-chr15-78982924-3	chr15	78982428	78983428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024716)	promoter-TSS (NM_001024716)	-128.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	85.24	73.73	64.75	63.42	77.44	81.18	101.39	105.24	41.22
Merged-chr2-30794837-3	chr2	30794324	30795324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_198000)	TTS (NM_198000)	6913.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	20.02	17.05	21.27	17.54	13.53	20.9	14.79	12.82	18.74
Merged-chr4-101647478-3	chr4	101646984	101647984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-299.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	133.29	125.33	112.84	93.11	106.36	108.51	151.03	189.69	86.81
Merged-chr12-16875898-3	chr12	16875396	16876396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19082.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	214.52	223.02	134.12	212.54	176.81	166.38	141.53	189.25	91.18
Merged-chr2-166639243-3	chr2	166638744	166639744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 3 of 39)	intron (NM_177782, intron 3 of 39)	74588.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	34.32	33.64	30.52	32.39	30.32	25.72	47.53	28.74	12.49
Merged-chrX-74281761-3	chrX	74281260	74282260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173547)	promoter-TSS (NM_001173547)	-24.0	NM_027109	69537.0	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	30.32	36.86	44.4	44.53	40.59	49.83	43.3	41.56	39.97
Merged-chr5-109690886-3	chr5	109690410	109691410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131917.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	22.88	32.72	20.35	31.71	29.39	22.51	29.57	31.84	34.35
Merged-chr11-8610037-3	chr11	8609499	8610499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	54536.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	271.73	226.25	137.82	232.78	216.93	135.84	172.16	193.67	92.43
Merged-chr5-31452425-3	chr5	31451940	31452940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	4.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	75.51	77.87	39.77	76.92	52.72	75.56	78.16	92.86	53.08
Merged-chr4-133468252-3	chr4	133467754	133468754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11879.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	231.68	142.38	86.95	252.34	165.14	174.42	39.08	22.11	12.49
Merged-chr18-14682270-3	chr18	14681832	14682832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 1 of 10)	CpG	582.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	136.15	157.13	126.72	171.38	203.86	182.46	159.48	152.55	131.15
Merged-chr1-191281372-3	chr1	191280856	191281856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36762.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	242.55	178.32	84.17	290.13	216.93	160.76	111.96	122.04	71.2
Merged-chr2-84059457-3	chr2	84058949	84059949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118223.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	22.31	17.05	9.25	21.59	14.93	9.65	16.9	18.57	8.74
Merged-chr8-22698203-3	chr8	22697697	22698697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	8386.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	57.21	60.82	47.17	53.3	42.45	63.5	49.64	27.86	49.96
Merged-chr14-66189035-3	chr14	66188525	66189525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 4 of 30)	intron (NM_001162366, intron 4 of 30)	24799.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	59.49	60.36	63.82	43.18	40.12	44.21	72.88	60.13	51.21
Merged-chr1-184480827-3	chr1	184480338	184481338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76853.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	24.03	9.68	21.27	37.11	14.93	28.94	19.01	4.86	9.37
Merged-chr7-19326007-3	chr7	19325470	19326470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15925.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	160.75	76.03	56.42	127.52	74.17	45.01	123.57	114.08	53.71
Merged-chr12-3913055-3	chr12	3912548	3913548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001271753, exon 23 of 23)	3' UTR (NM_001271753, exon 23 of 23)	21304.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	37.18	44.7	28.67	51.95	46.65	38.58	38.02	51.73	21.23
Merged-chr2-70885862-3	chr2	70885361	70886361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-60381.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	37.76	28.57	27.75	37.11	28.92	28.13	51.75	52.18	28.73
Merged-chr16-55822008-5	chr16	55821443	55822443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159394, exon 1 of 12)	exon (NM_001159394, exon 1 of 12)	195.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	328.36	290.29	234.94	398.76	374.14	290.97	272.5	293.16	182.36
Merged-chr5-93198378-3	chr5	93197878	93198878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	8117.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	54.92	55.75	49.02	40.48	46.65	43.4	45.42	54.83	38.72
Merged-chr3-14880534-3	chr3	14880045	14881045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5724.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	24.6	16.59	19.42	24.29	7.0	13.66	11.62	10.61	8.12
Merged-chr6-131353731-3	chr6	131353242	131354242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34708.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	7.44	4.15	9.25	5.4	2.33	0.0	6.34	2.21	2.5
Merged-chr7-43313254-3	chr7	43312753	43313753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357811)	promoter-TSS (NM_001357811)	47.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	110.41	107.36	129.49	114.7	85.37	114.94	115.12	104.79	72.45
Merged-chr4-93335523-3	chr4	93335028	93336028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026954)	promoter-TSS (NM_026954)	-17.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	92.1	53.91	87.87	65.45	62.05	104.49	94.0	46.87	27.48
Merged-chr5-64803202-3	chr5	64802716	64803716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008453)	promoter-TSS (NM_008453)	-307.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	283.74	177.86	166.49	267.19	131.09	151.11	200.68	107.89	82.44
Merged-chr2-180695371-3	chr2	180694841	180695841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	Charlie1|DNA|hAT-Charlie	-3293.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	76.08	118.42	49.02	112.0	97.03	91.63	57.03	69.86	23.11
Merged-chr17-87282146-3	chr17	87281622	87282622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028639)	promoter-TSS (NM_028639)	692.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	338.66	356.65	253.44	355.58	274.31	241.94	229.19	273.7	210.47
Merged-chr12-112693627-3	chr12	112693119	112694119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	14779.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	179.05	153.9	74.92	233.45	224.39	175.23	185.89	187.48	68.07
Merged-chr17-24470286-3	chr17	24469767	24470767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025954)	promoter-TSS (NM_025954)	-206.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	225.39	195.37	200.71	242.22	215.99	172.01	201.73	192.34	118.66
Merged-chr6-108098682-3	chr6	108098185	108099185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33640.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	8.01	6.45	1.85	12.82	6.06	4.82	12.67	8.84	5.0
Merged-chr5-104958369-3	chr5	104957877	104958877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	24340.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	67.5	80.64	52.72	57.35	50.85	55.46	47.53	31.39	51.21
Merged-chr7-92886401-3	chr7	92885896	92886896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	11143.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	73.79	68.2	66.6	86.36	73.24	50.64	101.39	68.54	48.09
Merged-chr5-72817852-3	chr5	72817320	72818320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	50628.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	50.91	46.08	11.1	60.72	41.52	24.11	33.8	26.97	24.36
Merged-chr1-97661188-3	chr1	97660677	97661677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	499.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	155.6	123.95	121.17	117.4	129.69	130.21	165.82	115.85	102.42
Merged-chr3-88510148-3	chr3	88509648	88510648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6796.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	72.08	49.76	12.02	70.17	34.06	40.19	32.74	34.49	8.74
Merged-chr9-66060126-3	chr9	66059605	66060605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011149)	promoter-TSS (NM_011149)	-64.0	NM_011149	19035.0	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	104.11	102.75	72.15	97.16	86.77	96.45	103.51	104.35	52.46
Merged-chr16-11174837-3	chr16	11174377	11175377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	1516.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	131.0	158.05	97.12	132.24	111.5	64.3	123.57	150.78	78.69
Merged-chr7-24904272-3	chr7	24903776	24904776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130152)	promoter-TSS (NM_001130152)	-70.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	43.48	39.63	38.85	46.56	30.32	71.54	60.2	53.06	48.09
Merged-chr17-26533989-3	chr17	26533479	26534479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25507.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	360.97	323.93	188.69	315.09	294.37	229.88	246.09	328.53	144.89
Merged-chr17-13938867-1	chr17	13938367	13939367	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9506.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.72	5.99	3.7	7.42	4.67	4.02	3.17	5.31	5.0
Merged-chr15-81860045-3	chr15	81859516	81860516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1690.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	232.83	202.75	155.39	187.57	140.42	148.7	222.86	270.61	136.15
Merged-chr5-3356097-3	chr5	3355588	3356588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12195.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	135.0	148.83	70.3	182.85	128.76	137.45	158.43	136.63	84.31
Merged-chr11-114789346-3	chr11	114788879	114789879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001102615, exon 18 of 20)	exon (NM_001102615, exon 18 of 20)	6513.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	21.74	10.6	16.65	18.22	13.06	6.43	15.84	20.34	2.5
Merged-chr8-120323226-3	chr8	120322715	120323715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94985.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	24.03	21.66	12.95	43.18	26.59	35.37	29.57	17.24	8.74
Merged-chr12-105027894-3	chr12	105027406	105028406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3235.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	18.31	35.02	16.65	32.39	27.99	27.33	14.79	18.57	22.48
Merged-chr2-91395897-1	chr2	91395397	91396397	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 2 of 8)	RMER19C|LTR|ERVK	48817.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	14.87	16.59	6.47	39.81	38.25	17.68	14.79	15.03	6.87
Merged-chr12-58538497-3	chr12	58537998	58538998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-269240.0	NM_025809	66864.0	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	10.87	22.58	29.6	13.49	7.93	25.72	13.73	6.63	11.24
Merged-chr2-144337914-3	chr2	144337408	144338408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5828.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	58.35	21.66	16.65	54.65	26.59	36.17	31.69	30.07	14.99
Merged-chr2-117249762-3	chr2	117249246	117250246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	7.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	112.12	119.8	79.55	108.63	87.24	49.03	81.33	71.63	50.59
Merged-chr6-65516882-3	chr6	65516383	65517383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73515.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	36.04	30.87	29.6	36.43	25.66	24.11	46.47	41.12	28.73
Merged-chr2-119898485-3	chr2	119897987	119898987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013720, intron 1 of 23)	intron (NM_013720, intron 1 of 23)	1259.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	110.41	99.53	52.72	68.82	56.91	40.19	88.72	84.9	63.7
Merged-chr17-84342591-3	chr17	84342107	84343107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	LTR40b|LTR|ERVL	123601.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	28.03	45.16	24.97	28.34	19.59	32.96	15.84	19.01	21.86
Merged-chr7-105762970-3	chr7	105762459	105763459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10724.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	34.32	18.89	9.25	23.62	11.66	3.22	39.08	38.03	7.49
Merged-chr19-32223926-3	chr19	32223429	32224429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-12916.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	110.98	119.8	44.4	205.11	175.41	116.55	103.51	87.99	65.58
Merged-chr8-80879859-3	chr8	80879373	80880373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	606.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	58.35	62.21	75.85	74.22	76.51	106.9	54.92	44.66	56.83
Merged-chr17-17587897-2	chr17	17587399	17588399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36590.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	109.83	111.97	79.55	89.74	88.64	87.61	113.01	133.98	66.82
Merged-chr6-42421695-3	chr6	42421206	42422206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12829.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	76.08	47.0	25.9	68.15	38.25	22.51	33.8	35.37	21.23
Merged-chr14-25481087-3	chr14	25480577	25481577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	21892.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	179.62	177.4	110.99	223.33	160.48	170.4	149.98	190.13	90.56
Merged-chr4-41640291-3	chr4	41639804	41640804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027147)	promoter-TSS (NM_027147)	-2.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	12.59	4.61	3.7	6.07	4.67	8.04	8.45	5.31	1.25
Merged-chr17-47273141-3	chr17	47272653	47273653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	42923.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	53.2	41.93	27.75	46.56	31.72	43.4	21.12	37.14	24.36
Merged-chr19-8819934-3	chr19	8819451	8820451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027412)	promoter-TSS (NM_027412)	550.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	285.45	211.5	210.89	192.29	170.28	244.35	205.96	190.57	157.38
Merged-chr15-89591883-3	chr15	89591383	89592383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026817)	promoter-TSS (NM_026817)	40.0	NM_026817	68708.0	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	7.44	4.61	3.7	9.45	8.4	6.43	9.51	3.1	6.87
Merged-chr11-101658494-3	chr11	101657999	101658999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7042.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	232.83	234.54	127.64	258.42	179.14	141.47	241.87	271.49	128.65
Merged-chr5-115513443-1	chr5	115512943	115513943	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	ID_B1|SINE|B4	6767.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	112.69	91.7	77.7	322.51	194.53	194.52	107.73	113.64	57.46
Merged-chr3-127020332-3	chr3	127019836	127020836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 14 of 47)	intron (NM_001327938, intron 14 of 47)	-21884.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	8.58	7.37	5.55	11.47	2.8	8.04	11.62	11.05	7.49
Merged-chr12-84172450-3	chr12	84171945	84172945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 2 of 12)	intron (NM_001163501, intron 2 of 12)	21570.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	65.21	49.76	62.9	72.87	50.38	65.91	59.15	70.75	43.09
Merged-chr1-172500784-3	chr1	172500281	172501281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	CpG	535.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	140.73	101.37	45.32	200.39	116.16	104.49	198.56	189.25	94.93
Merged-chr2-72366703-3	chr2	72366179	72367179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80978.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	69.79	94.46	47.17	54.65	71.38	54.66	120.41	141.94	52.46
Merged-chr15-84994670-3	chr15	84994169	84995169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6698.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	99.54	105.98	80.47	91.76	107.3	115.75	122.52	110.98	79.32
Merged-chr12-76369545-3	chr12	76369068	76370068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	-8.0	NM_028356	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	295.75	255.74	272.86	250.32	219.26	262.04	277.78	194.55	153.63
Merged-chr18-39650556-3	chr18	39650058	39651058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122939.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	87.52	121.65	55.5	124.82	132.02	143.88	136.25	145.47	86.18
Merged-chr2-18056628-3	chr2	18056141	18057141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149308, intron 1 of 9)	CpG	913.0	NR_149308	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	173.33	129.94	98.05	129.55	102.17	119.76	160.54	107.89	59.95
Merged-chr2-132595939-3	chr2	132595448	132596448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2248.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	40.62	42.39	20.35	37.11	24.72	45.01	14.79	23.43	13.74
Merged-chr5-43354618-3	chr5	43354154	43355154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119300.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	28.03	21.2	5.55	53.3	43.39	20.09	69.71	40.68	12.49
Merged-chr8-124020949-1	chr8	124020449	124021449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001357315, exon 1 of 5)	5' UTR (NM_001357315, exon 1 of 5)	107.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	92.1	90.31	109.14	130.9	113.83	109.32	170.05	101.7	69.32
Merged-chr18-5740603-3	chr18	5740061	5741061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 2 of 7)	L1MD2|LINE|L1	147914.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	9.72	10.14	0.0	14.84	6.53	4.82	7.39	6.19	1.25
Merged-chr5-45719293-3	chr5	45718796	45719796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027993)	TTS (NR_027993)	8282.0	NR_027993	100041576.0	Mm.451765	NR_027993	ENSMUSG00000015882	Gm3414	-	predicted gene 3414	ncRNA	6.86	2.76	5.55	7.42	1.87	3.22	5.28	3.98	3.75
Merged-chr1-144250611-3	chr1	144250126	144251126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1522.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	41.19	47.92	16.65	24.96	20.06	34.56	29.57	25.2	15.61
Merged-chr5-53995393-3	chr5	53994859	53995859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3164.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	33.75	25.34	11.1	44.53	21.46	23.31	36.97	23.43	21.86
Merged-chr12-117476770-3	chr12	117476272	117477272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-39707.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	23.45	13.36	11.1	13.49	6.06	5.63	25.35	31.84	11.24
Merged-chr1-194992765-3	chr1	194992266	194993266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15807.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	64.07	56.68	70.3	66.8	65.31	62.7	99.28	90.64	74.32
Merged-chr9-113930905-3	chr9	113930400	113931400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083319)	promoter-TSS (NM_001083319)	-34.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	114.98	121.19	99.89	110.65	95.17	75.56	117.24	121.6	61.83
Merged-chr13-3634078-3	chr13	3633598	3634598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267724)	promoter-TSS (NM_001267724)	66.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	50.34	47.92	23.12	45.88	33.59	38.58	46.47	34.05	28.1
Merged-chr4-6453962-5	chr4	6453458	6454458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	CpG	313.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	180.2	146.07	181.29	164.63	109.63	122.18	200.68	107.89	93.05
Merged-chr2-34871016-3	chr2	34870504	34871504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080554)	promoter-TSS (NM_080554)	-42.0	NM_080554	66998.0	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	93.82	114.74	100.82	112.68	130.62	130.21	113.01	111.87	60.58
Merged-chr8-71405990-3	chr8	71405474	71406474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172756)	promoter-TSS (NM_172756)	-38.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	23.45	33.18	37.92	29.01	20.99	24.11	26.4	28.74	24.98
Merged-chr17-12916285-3	chr17	12915776	12916776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013686)	promoter-TSS (NM_013686)	-53.0	NM_001290712	21454.0	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	126.42	174.18	147.99	135.62	146.02	121.37	166.88	157.85	92.43
Merged-chr2-75981823-3	chr2	75981259	75982259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030188, exon 1 of 1)	5' UTR (NM_030188, exon 1 of 1)	208.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	104.69	96.3	72.15	93.79	98.9	73.95	100.34	88.43	63.08
Merged-chr4-32564565-3	chr4	32564078	32565078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	7084.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	283.17	258.04	132.27	256.39	195.0	208.18	264.05	284.31	166.12
Merged-chr17-24463977-3	chr17	24463492	24464492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	23.45	18.89	34.22	14.84	24.72	23.31	13.73	8.84	13.74
Merged-chr18-4256595-3	chr18	4256081	4257081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	41.19	57.14	51.8	47.23	50.85	81.18	53.87	44.22	54.33
Merged-chr5-105568285-3	chr5	105567809	105568809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	48838.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	139.58	108.75	88.8	130.9	88.64	92.44	141.53	154.76	54.96
Merged-chr11-70372651-3	chr11	70372157	70373157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-20626.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	30.89	45.16	17.57	47.9	34.52	40.99	32.74	33.16	42.47
Merged-chr13-102695480-5	chr13	102694990	102695990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	1932.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	177.34	142.38	107.29	144.39	78.37	88.42	193.28	207.82	118.04
Merged-chr4-130919926-3	chr4	130919428	130920428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6594.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	215.66	177.86	162.79	215.23	166.08	182.46	204.9	170.68	91.18
Merged-chr8-117526354-3	chr8	117525850	117526850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	28075.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	16.02	19.35	7.4	23.62	25.19	20.9	21.12	12.38	14.36
Merged-chr1-51938578-3	chr1	51938087	51939087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22609.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	27.46	23.96	16.65	42.51	28.92	57.87	20.07	23.43	14.99
Merged-chr2-27740346-3	chr2	27739841	27740841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	29758.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	235.11	162.2	115.62	192.97	133.42	139.06	139.42	167.58	78.07
Merged-chr7-127470976-3	chr7	127470484	127471484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-630.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	206.51	169.11	161.87	218.61	132.49	159.95	192.23	173.33	124.91
Merged-chr19-4163355-3	chr19	4162836	4163836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021485)	promoter-TSS (NM_021485)	47.0	NR_153661	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	122.99	76.03	53.65	79.62	56.91	67.52	104.56	83.13	39.35
Merged-chr11-118419059-3	chr11	118418537	118419537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267592)	promoter-TSS (NM_001267592)	81.0	NM_001025617	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	229.39	203.21	195.17	236.83	207.6	171.21	211.24	204.28	119.28
Merged-chr3-9249869-3	chr3	9249347	9250347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177660)	promoter-TSS (NM_177660)	-720.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	51.48	28.57	22.2	93.79	53.18	24.92	38.02	21.67	8.74
Merged-chr10-94035953-3	chr10	94035463	94036463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304572)	promoter-TSS (NM_001304572)	-38.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	77.8	64.51	54.57	73.54	69.51	57.87	164.76	110.98	60.58
Merged-chr14-61682372-3	chr14	61681899	61682899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-26.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	387.85	371.39	320.96	406.85	302.3	288.56	315.8	372.75	241.07
Merged-chr9-70257694-3	chr9	70257227	70258227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	50377.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	120.13	124.87	63.82	138.32	152.55	80.38	51.75	60.58	25.61
Merged-chr16-13672618-3	chr16	13672051	13673051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177552, intron 1 of 5)	intron (NM_001177552, intron 1 of 5)	693.0	NM_025653	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	422.18	489.35	293.21	396.73	437.12	291.78	387.62	458.97	216.09
Merged-chr7-132358985-3	chr7	132358484	132359484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41756.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	14.3	15.67	3.7	14.84	14.46	24.92	19.01	14.59	3.12
Merged-chr3-101010828-3	chr3	101010343	101011343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 6 of 8)	intron (NM_001167906, intron 6 of 8)	18652.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	21.74	23.96	31.45	14.17	18.19	21.7	21.12	19.01	23.11
Merged-chr7-43443503-3	chr7	43442995	43443995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-577.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	188.21	193.99	211.81	172.73	181.47	216.22	161.6	193.67	176.12
Merged-chr2-128127462-3	chr2	128126965	128127965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	-110.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	203.65	149.29	173.89	161.93	128.76	158.35	153.15	141.49	156.13
Merged-chr1-52113804-3	chr1	52113234	52114234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5704.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	121.85	136.85	91.57	112.68	111.5	87.61	158.43	126.9	52.46
Merged-chr7-89423323-2	chr7	89422823	89423823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2983.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	16.59	3.69	3.7	24.29	6.06	10.45	3.17	3.1	4.37
Merged-chr16-50552220-4	chr16	50551710	50552710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 4 of 5)	MLTR11B|LTR|ERVK	23708.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	125.85	126.25	127.64	123.47	126.89	114.94	89.78	113.19	56.83
Merged-chr10-8021527-3	chr10	8021025	8022025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-65402.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	27.46	13.82	12.02	18.22	7.46	24.11	11.62	5.75	14.36
Merged-chr2-26140531-3	chr2	26140009	26141009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-3.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	234.54	216.57	214.59	198.37	173.54	158.35	170.05	145.03	115.54
Merged-chr16-20424316-3	chr16	20423791	20424791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	2103.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	107.55	121.19	81.4	118.08	136.69	84.4	149.98	192.34	73.07
Merged-chr1-131072636-1	chr1	131072136	131073136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	25207.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	19.45	11.98	18.5	114.03	98.43	121.37	22.18	10.61	22.48
Merged-chr11-95859279-2	chr11	95858774	95859774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045187, intron 1 of 1)	CpG	457.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	209.37	203.67	190.54	282.71	263.11	237.92	252.43	328.97	139.89
Merged-chr8-11038553-3	chr8	11038065	11039065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30135.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	69.79	56.22	18.5	109.3	72.78	65.11	46.47	39.35	16.24
Merged-chr18-35771438-3	chr18	35770943	35771943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019912)	promoter-TSS (NM_019912)	-116.0	NM_019912	56550.0	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	256.28	160.81	173.89	219.96	134.82	140.66	278.83	188.36	136.15
Merged-chr1-136140275-3	chr1	136139770	136140770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	8880.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	342.66	378.76	251.59	348.83	309.3	258.82	363.33	416.08	226.08
Merged-chr14-46882213-1	chr14	46881713	46882713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-752.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	134.43	123.49	89.72	132.92	119.89	117.35	126.74	175.1	93.68
Merged-chr4-117120551-3	chr4	117120057	117121057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024078, exon 7 of 7)	non-coding (NR_024078, exon 7 of 7)	5168.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	150.45	105.06	113.77	274.61	252.85	181.66	163.71	181.73	88.06
Merged-chr13-52600468-3	chr13	52599937	52600937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	3555.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	84.09	74.65	53.65	106.61	81.17	89.22	77.1	80.03	30.6
Merged-chr14-14702825-3	chr14	14702331	14703331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360516)	promoter-TSS (NM_001360516)	-194.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	62.93	58.06	70.3	52.63	48.52	42.6	69.71	46.43	34.35
Merged-chr11-69554940-3	chr11	69554425	69555425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007911, exon 5 of 5)	3' UTR (NM_007911, exon 5 of 5)	5312.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	24.03	19.35	20.35	26.99	20.99	26.53	19.01	18.13	41.22
Merged-chr3-103207668-3	chr3	103207154	103208154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35999.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	79.52	36.86	37.0	95.14	52.25	34.56	120.41	110.54	54.33
Merged-chr9-78428356-3	chr9	78427861	78428861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14876.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	103.54	105.52	121.17	126.85	120.36	166.38	126.74	143.7	96.8
Merged-chr4-53155691-3	chr4	53155212	53156212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4183.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	239.69	203.67	94.35	249.65	231.39	163.17	185.89	257.78	98.68
Merged-chr8-22757588-3	chr8	22757096	22758096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008872)	promoter-TSS (NM_008872)	-126.0	NM_008872	18791.0	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	5.15	3.69	1.85	6.75	4.2	0.0	4.22	0.44	0.0
Merged-chr11-29846788-1	chr11	29846288	29847288	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 10 of 41)	Lx2|LINE|L1	-21120.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	5.15	3.23	3.7	3.37	1.4	3.22	7.39	7.52	4.37
Merged-chr14-56811897-3	chr14	56811391	56812391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253753)	promoter-TSS (NM_001253753)	-98.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	148.73	147.91	137.82	159.91	137.62	89.22	130.97	116.73	113.04
Merged-chr1-97659575-3	chr1	97659077	97660077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133825, intron 1 of 2)	intron (NM_133825, intron 1 of 2)	2099.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	65.79	67.27	70.3	78.94	83.04	86.01	78.16	103.47	51.21
Merged-chr10-13304867-3	chr10	13304355	13305355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19434.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	46.91	74.65	31.45	63.42	54.58	45.82	57.03	43.33	24.98
Merged-chr19-8798593-3	chr19	8798096	8799096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026329)	promoter-TSS (NM_026329)	-39.0	NM_026329	67710.0	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	141.3	136.85	78.62	130.22	125.02	101.28	121.46	166.7	93.05
Merged-chr5-90224058-3	chr5	90223537	90224537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033310)	promoter-TSS (NM_001033310)	-41.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	164.18	194.45	126.72	176.1	189.4	155.13	174.27	183.06	102.42
Merged-chr18-32857646-3	chr18	32857175	32858175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20388.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	31.46	29.03	36.07	28.34	27.06	28.13	28.52	29.63	29.35
Merged-chr4-138973235-1	chr4	138972735	138973735	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029857, exon 1 of 17)	5' UTR (NM_029857, exon 1 of 17)	330.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	407.3	418.39	245.11	377.84	403.06	343.22	366.5	372.3	164.25
Merged-chr5-137786811-3	chr5	137786318	137787318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-117.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	299.76	176.48	205.34	211.86	133.42	209.79	238.7	210.47	163.63
Merged-chr4-43040368-3	chr4	43039868	43040868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253353)	promoter-TSS (NM_001253353)	-67.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	117.27	123.49	77.7	127.52	92.37	127.0	132.02	122.04	98.05
Merged-chr14-16380313-3	chr14	16379805	16380805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	15099.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	23.45	7.37	11.1	14.17	6.53	34.56	34.85	22.55	28.73
Merged-chr6-88045265-3	chr6	88044753	88045753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293652)	promoter-TSS (NM_001293652)	17.0	NM_001293652	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	344.38	256.66	223.84	338.03	250.52	200.14	254.54	187.92	139.27
Merged-chr17-56325846-3	chr17	56325322	56326322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357909)	promoter-TSS (NM_001357909)	-228.0	NM_172132	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	87.52	86.63	91.57	78.27	61.11	78.77	106.67	88.43	78.69
Merged-chr7-27238796-3	chr7	27238311	27239311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133770, intron 5 of 14)	intron (NM_133770, intron 5 of 14)	5798.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	106.97	112.89	69.37	91.76	76.04	124.59	120.41	106.12	65.58
Merged-chr2-180171438-3	chr2	180170939	180171939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-149.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	241.98	168.19	210.89	255.04	131.09	124.59	188.0	87.55	73.69
Merged-chr6-22398574-3	chr6	22398059	22399059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42478.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	31.46	38.25	29.6	31.04	34.52	36.97	27.46	29.63	33.72
Merged-chr5-149051425-1	chr5	149050925	149051925	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001313894, exon 1 of 5)	5' UTR (NM_001313894, exon 1 of 5)	191.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	127.0	119.8	110.07	168.0	119.89	152.72	129.91	90.64	98.05
Merged-chr9-77656059-3	chr9	77655485	77656485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172925, exon 3 of 3)	3' UTR (NM_172925, exon 3 of 3)	19253.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	16.02	18.43	4.62	15.52	14.0	1.61	9.51	9.73	4.37
Merged-chr10-51422737-3	chr10	51422237	51423237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-57875.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	28.6	44.24	38.85	37.11	39.65	39.39	20.07	22.55	26.23
Merged-chr6-125345767-3	chr6	125345263	125346263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011324)	TTS (NM_011324)	-3960.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	32.04	29.49	22.2	33.06	18.19	26.53	27.46	25.65	30.6
Merged-chr1-106162791-3	chr1	106162294	106163294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8730.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	9.72	6.91	3.7	18.22	10.73	10.45	17.96	15.03	5.0
Merged-chr8-88636123-3	chr8	88635606	88636606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027840)	promoter-TSS (NM_027840)	22.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	155.03	180.63	150.77	91.76	62.05	85.2	183.78	215.78	93.68
Merged-chr8-120114035-3	chr8	120113562	120114562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-90.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	249.42	200.9	167.42	223.33	195.47	172.01	248.2	220.2	116.79
Merged-chr1-186575882-3	chr1	186575393	186576393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17212.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	55.49	53.91	25.9	49.25	37.32	21.7	67.6	80.47	18.74
Merged-chr6-39725555-3	chr6	39725053	39726053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-90.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	264.86	174.64	142.44	248.3	112.9	102.88	183.78	95.51	106.17
Merged-chr7-110018266-3	chr7	110017744	110018744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362172)	promoter-TSS (NM_001362172)	-7.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	156.17	164.5	153.54	139.67	166.54	172.81	115.12	124.69	91.18
Merged-chr7-55794144-3	chr7	55793626	55794626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360874)	promoter-TSS (NM_001360874)	1.0	NM_001360873	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	16.59	23.96	21.27	18.22	27.06	35.37	33.8	21.22	19.98
Merged-chr4-123928164-3	chr4	123927653	123928653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 5 of 6)	intron (NM_017475, intron 5 of 6)	10720.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	179.05	126.72	79.55	161.93	120.36	123.78	156.32	169.35	79.94
Merged-chr5-43185719-3	chr5	43185242	43186242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-47721.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	42.9	52.07	60.12	64.1	61.11	86.81	90.83	129.55	50.59
Merged-chr9-37093177-2	chr9	37092684	37093684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	54138.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	35.47	61.28	46.25	33.06	46.65	53.85	3.17	3.54	5.0
Merged-chr2-117027381-3	chr2	117026875	117027875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93696.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	78.94	64.51	36.07	85.69	58.31	42.6	69.71	57.92	39.97
Merged-chr5-143579957-3	chr5	143579470	143580470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31264.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	30.32	22.12	24.97	31.04	15.86	22.51	27.46	15.03	22.48
Merged-chr6-121147039-3	chr6	121146540	121147540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16018.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	9.15	6.45	0.0	4.05	4.2	3.22	5.28	3.1	1.25
Merged-chr16-8738991-3	chr16	8738483	8739483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003918)	promoter-TSS (NM_001003918)	-641.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	144.73	82.02	109.14	146.41	49.92	106.1	156.32	37.14	49.96
Merged-chr10-68238944-3	chr10	68238433	68239433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39793.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	180.77	139.16	107.29	142.37	115.23	146.29	205.96	233.02	94.93
Merged-chr7-136308987-3	chr7	136308474	136309474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	40441.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	29.75	58.98	36.07	49.25	54.11	58.68	63.37	63.67	39.35
Merged-chr15-100038685-3	chr15	100038215	100039215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159361)	promoter-TSS (NM_001159361)	51.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	348.95	211.04	170.19	379.87	231.85	172.01	252.43	186.15	139.89
Merged-chr18-34247579-3	chr18	34247052	34248052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-142.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	67.5	56.22	42.55	85.01	44.78	30.54	90.83	64.11	34.97
Merged-chr14-44103900-3	chr14	44103395	44104395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001012766)	TTS (NM_001012766)	1008.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	176.19	128.56	87.87	129.55	59.25	93.24	100.34	93.74	62.45
Merged-chr5-100039020-3	chr5	100038515	100039515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	207.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	271.15	276.47	222.91	182.17	209.46	190.5	172.16	195.44	164.88
Merged-chr2-167352728-3	chr2	167352235	167353235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3557.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	56.63	44.24	25.9	84.34	57.38	65.91	99.28	81.36	54.96
Merged-chr14-52106906-3	chr14	52106394	52107394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2873.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	109.26	133.17	101.74	122.8	130.16	123.78	143.64	139.28	61.83
Merged-chr17-56938968-3	chr17	56938494	56939494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3606.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	20.02	42.39	20.35	26.99	25.66	20.09	20.07	25.65	21.23
Merged-chr6-15846163-3	chr6	15845670	15846670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	125509.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	29.75	45.16	31.45	26.99	26.59	25.72	44.36	57.48	27.48
Merged-chr6-134701033-3	chr6	134700554	134701554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	60114.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	145.87	107.36	40.7	81.64	48.98	61.09	48.58	45.99	42.47
Merged-chr3-13592760-3	chr3	13592268	13593268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	60097.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	15.45	16.59	3.7	18.89	12.6	29.74	20.07	11.94	10.62
Merged-chr7-6170534-3	chr7	6170070	6171070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1943.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	117.84	100.91	78.62	92.44	88.17	73.95	136.25	112.75	51.84
Merged-chr15-88505927-1	chr15	88505427	88506427	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94375.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	9.15	7.37	9.25	2.7	4.67	4.82	36.97	33.16	13.74
Merged-chr18-34861930-1	chr18	34861430	34862430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007913, intron 1 of 1)	intron (NM_007913, intron 1 of 1)	723.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	21.74	14.75	17.57	24.96	14.46	20.09	20.07	10.17	12.49
Merged-chr6-113741622-3	chr6	113741130	113742130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-949.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	51.48	73.73	41.62	74.89	57.85	62.7	70.76	60.58	51.21
Merged-chr18-82526055-3	chr18	82525571	82526571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-28392.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	25.17	23.04	14.8	12.82	10.26	7.23	5.28	11.5	6.25
Merged-chr18-50096747-3	chr18	50096241	50097241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31460.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	240.83	330.38	209.04	273.26	312.56	247.57	287.28	364.79	179.24
Merged-chr10-19033873-3	chr10	19033376	19034376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-18466.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	30.89	25.8	5.55	24.29	19.59	19.29	29.57	30.51	13.74
Merged-chr17-75119639-3	chr17	75119142	75120142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	-59139.0	NM_001331236	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	6.29	4.15	1.85	2.7	1.4	3.22	5.28	2.65	8.74
Merged-chr4-95051602-3	chr4	95051082	95052082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010591, exon 1 of 1)	5' UTR (NM_010591, exon 1 of 1)	640.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	399.29	399.04	246.96	339.38	381.6	277.31	354.88	380.71	239.19
Merged-chr2-60851405-3	chr2	60850908	60851908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	30030.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	138.44	134.09	127.64	159.23	99.37	102.08	128.85	162.28	91.81
Merged-chr4-12009362-3	chr4	12008869	12009869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42795.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	76.08	66.35	55.5	99.86	90.97	51.44	84.49	56.16	23.73
Merged-chr10-19559947-3	chr10	19559448	19560448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32001.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	51.48	72.8	45.32	64.1	59.25	64.3	65.48	82.24	41.22
Merged-chr13-4609205-3	chr13	4608721	4609721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	-57.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	22.88	24.42	12.95	41.83	41.99	25.72	34.85	35.82	29.35
Merged-chr19-41381847-3	chr19	41381386	41382386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	3184.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	371.83	283.84	174.82	341.41	214.59	212.2	411.91	347.1	193.6
Merged-chr11-59542569-3	chr11	59542057	59543057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145827)	promoter-TSS (NM_145827)	-129.0	NM_145827	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	364.4	393.05	203.49	354.23	355.01	244.35	280.95	378.05	174.87
Merged-chr7-111082357-4	chr7	111081864	111082864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013507, intron 1 of 21)	CpG	666.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	311.77	305.5	272.86	309.7	242.58	244.35	248.2	197.65	186.73
Merged-chr13-51849035-3	chr13	51848536	51849536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011817)	TTS (NM_011817)	2361.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	129.28	94.92	56.42	105.93	73.24	94.04	89.78	102.58	87.43
Merged-chr15-36496796-3	chr15	36496313	36497313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-22.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	15.45	14.75	3.7	18.89	16.33	20.09	17.96	8.84	11.24
Merged-chr15-67781022-3	chr15	67780496	67781496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	477860.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	77.8	64.51	24.05	43.86	37.79	35.37	54.92	44.66	61.83
Merged-chr7-80209938-3	chr7	80209449	80210449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	L4_B_Mam|LINE|RTE-X	11508.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	85.24	64.05	58.27	108.63	75.11	49.03	69.71	76.94	23.73
Merged-chr18-68196096-3	chr18	68195603	68196603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-31843.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	61.78	46.08	47.17	61.4	48.98	42.6	54.92	60.13	37.47
Merged-chr7-3693214-3	chr7	3692707	3693707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164205)	promoter-TSS (NM_001164205)	318.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	171.04	180.17	178.52	170.03	144.62	184.07	204.9	216.22	117.41
Merged-chr7-125613851-3	chr7	125613360	125614360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	L1MA9|LINE|L1	10431.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	59.49	72.8	74.92	64.1	43.39	66.71	51.75	49.52	41.84
Merged-chr19-3575926-3	chr19	3575433	3576433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028999)	promoter-TSS (NM_028999)	-184.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	322.07	248.36	183.14	229.4	200.6	171.21	265.1	244.52	175.49
Merged-chr7-80860411-3	chr7	80859912	80860912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1696.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	29.17	37.78	41.62	43.18	26.59	25.72	36.97	41.56	17.49
Merged-chr7-90370437-3	chr7	90369963	90370963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-16518.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	14.3	15.21	6.47	20.92	7.46	5.63	8.45	9.73	6.25
Merged-chr16-92698787-3	chr16	92698274	92699274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	CpG	-1445.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	56.06	75.57	45.32	53.98	59.71	34.56	48.58	55.27	57.46
Merged-chrUn_JH584304-59048-1	chrUn_JH584304	58548	59548	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 1 of 6)	intron (NR_003518, intron 1 of 6)	641.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	401.35	309.07	0.0
Merged-chr1-152581307-3	chr1	152580815	152581815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43902.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	363.83	292.6	181.29	294.85	189.87	189.69	274.61	269.72	131.78
Merged-chr9-123923282-3	chr9	123922793	123923793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	45399.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	384.42	304.58	260.84	327.91	337.29	242.74	336.92	394.86	187.36
Merged-chr3-31056739-8	chr3	31056308	31057308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	17842.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	203.08	233.62	186.84	247.62	212.26	185.68	277.78	334.28	134.27
Merged-chr9-96537041-3	chr9	96536542	96537542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58367.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	65.79	69.12	42.55	68.82	83.04	73.14	72.88	62.79	64.95
Merged-chr8-108387356-3	chr8	108386847	108387847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197330.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	11.44	7.37	11.1	9.45	9.33	20.09	17.96	6.19	5.0
Merged-chr8-117340427-3	chr8	117339939	117340939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-8731.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	168.76	126.25	98.97	157.21	100.3	140.66	182.72	183.94	90.56
Merged-chr1-182124728-3	chr1	182124252	182125252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012058)	promoter-TSS (NM_012058)	15.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	149.31	137.77	100.82	207.14	170.28	173.62	165.82	161.83	106.17
Merged-chr7-34196452-4	chr7	34195906	34196906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360710, exon 2 of 6)	exon (NM_001360710, exon 2 of 6)	264.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	172.19	171.87	135.97	153.84	193.13	141.47	156.32	145.03	94.93
Merged-chr3-137918540-3	chr3	137918041	137919041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019920)	promoter-TSS (NM_019920)	-14.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	187.06	184.77	116.54	228.73	239.32	155.93	309.46	321.46	131.78
Merged-chr1-62770775-3	chr1	62770260	62771260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 11 of 16)	intron (NM_001077404, intron 11 of 16)	23972.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	6.86	11.06	12.95	6.75	7.0	11.25	4.22	9.29	7.49
Merged-chr9-57233973-3	chr9	57233459	57234459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2597.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	31.46	18.89	12.95	35.09	27.52	31.35	28.52	13.71	19.98
Merged-chr11-60727323-3	chr11	60726847	60727847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302207)	promoter-TSS (NM_001302207)	-84.0	NM_001302207	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	223.67	182.93	162.79	228.73	190.8	158.35	243.98	195.0	123.66
Merged-chr19-43511740-3	chr19	43511241	43512241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	12864.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	323.78	334.99	196.09	310.37	285.04	225.06	284.11	306.86	146.76
Merged-chr11-80183847-3	chr11	80183346	80184346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028019)	promoter-TSS (NM_028019)	-26.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	139.01	126.25	138.74	151.81	121.76	183.26	129.91	151.22	94.93
Merged-chr6-34399355-3	chr6	34398843	34399843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13019.0	NM_009731	11997.0	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	70.36	47.0	50.87	96.48	58.31	70.73	64.43	65.88	40.59
Merged-chr12-30911631-3	chr12	30911130	30912130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013709)	promoter-TSS (NM_013709)	-18.0	NM_001110239	11431.0	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	45.76	60.36	45.32	37.78	63.45	40.99	68.65	63.23	40.59
Merged-chr4-130790363-3	chr4	130789860	130790860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	91.53	47.92	50.87	109.98	55.51	106.9	80.27	86.22	50.59
Merged-chr10-117148571-3	chr10	117148062	117149062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177798)	promoter-TSS (NM_177798)	-88.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	137.86	143.76	115.62	150.46	90.5	124.59	161.6	114.08	66.82
Merged-chr2-121171122-3	chr2	121170579	121171579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290819)	promoter-TSS (NM_001290819)	46.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	128.71	127.64	85.1	144.39	130.16	137.45	124.63	153.43	83.06
Merged-chr11-69095134-3	chr11	69094659	69095659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3790.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	274.59	259.88	179.44	313.07	257.05	237.12	252.43	336.93	153.63
Merged-chr1-105171230-3	chr1	105170725	105171725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-184782.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	34.9	51.15	33.3	35.09	34.06	56.27	62.31	78.71	44.34
Merged-chr7-126272372-3	chr7	126271869	126272869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145587)	promoter-TSS (NM_145587)	-127.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	5.15	3.69	7.4	7.42	13.06	9.65	16.9	5.31	4.37
Merged-chr19-3377118-3	chr19	3376600	3377600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11757.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	106.4	123.03	107.29	100.53	80.71	140.66	115.12	160.06	103.05
Merged-chr2-169918685-1	chr2	169918185	169919185	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44502.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.57	1.38	1.85	0.67	0.93	0.8	6.34	5.31	11.87
Merged-chr3-103171727-3	chr3	103171251	103172251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026602)	promoter-TSS (NM_026602)	96.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	258.57	227.63	97.12	267.86	257.05	148.7	246.09	246.29	91.81
Merged-chr4-108847957-3	chr4	108847470	108848470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	113.0	NM_029571	100087.0	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	80.09	69.12	72.15	74.22	63.45	97.26	44.36	41.12	47.46
Merged-chr10-78244165-3	chr10	78243675	78244675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081055, intron 1 of 22)	CpG	467.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	165.9	120.26	98.05	130.22	75.57	92.44	100.34	80.03	56.83
Merged-chr9-118610204-3	chr9	118609693	118610693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3484.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	210.52	227.63	150.77	233.45	223.92	184.87	261.93	274.14	152.38
Merged-chr7-80166899-3	chr7	80166398	80167398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	53.77	22.58	27.75	37.11	17.73	23.31	12.67	5.31	6.25
Merged-chr11-70669361-3	chr11	70668856	70669856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	60.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	89.81	75.57	79.55	81.64	59.25	94.85	103.51	98.6	58.71
Merged-chr11-69418185-3	chr11	69417699	69418699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	486.25	368.63	232.16	471.63	380.67	300.62	457.33	521.76	178.61
Merged-chr6-31220456-4	chr6	31219924	31220924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040257)	promoter-TSS (NR_040257)	73.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	195.07	209.2	144.29	203.76	172.61	161.56	127.8	136.63	100.55
Merged-chr10-80292392-3	chr10	80291915	80292915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310726)	promoter-TSS (NM_001310726)	-16.0	NM_009091	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	102.4	95.38	75.85	150.46	95.63	98.06	103.51	84.01	49.96
Merged-chr15-96633790-3	chr15	96633305	96634305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	MTD|LTR|ERVL-MaLR	8157.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	100.68	114.27	61.05	86.36	81.64	61.89	57.03	70.3	49.96
Merged-chr9-86592852-3	chr9	86592366	86593366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20813.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	25.17	31.79	9.25	21.59	21.93	15.27	7.39	7.07	9.37
Merged-chr17-56472978-3	chr17	56472495	56473495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	3485.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	21.74	12.9	6.47	19.57	14.0	8.84	36.97	9.29	5.0
Merged-chr4-152176820-3	chr4	152176331	152177331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1269.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	25.74	21.2	12.95	21.59	14.0	28.94	31.69	34.93	6.87
Merged-chr6-128135211-3	chr6	128134692	128135692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8386.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	60.64	100.91	61.05	57.35	40.59	37.78	89.78	112.75	39.35
Merged-chr15-58266606-3	chr15	58266099	58267099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	216.81	149.75	85.1	244.25	233.25	124.59	163.71	188.36	89.31
Merged-chr5-112240910-3	chr5	112240414	112241414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11604.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	10.3	6.45	0.0	8.77	3.73	8.04	5.28	6.63	5.62
Merged-chr7-43667432-2	chr7	43666935	43667935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-4596.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	155.03	135.01	74.0	160.58	96.1	91.63	153.15	147.24	76.82
Merged-chr7-127573245-3	chr7	127572737	127573737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026888)	promoter-TSS (NM_026888)	-111.0	NM_001360741	68961.0	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	93.24	68.66	73.07	85.69	84.9	61.09	101.39	74.28	34.97
Merged-chr6-100370497-3	chr6	100370021	100371021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-83163.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	33.75	13.36	24.05	11.47	6.06	11.25	20.07	18.57	13.74
Merged-chr10-119063260-1	chr10	119062760	119063760	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	-12761.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	175.62	163.12	92.5	246.27	192.2	120.57	207.01	183.94	151.14
Merged-chr15-64278964-3	chr15	64278473	64279473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33700.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	60.64	78.33	55.5	54.65	52.25	28.94	48.58	61.9	48.09
Merged-chr10-62547075-3	chr10	62546573	62547573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19628.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	14.87	17.51	3.7	23.62	18.66	16.08	15.84	14.59	16.86
Merged-chr1-36272684-3	chr1	36272186	36273186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	739.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	233.97	265.41	239.56	235.48	219.26	242.74	340.09	305.1	145.51
Merged-chr1-154034322-3	chr1	154033813	154034813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134384.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	105.26	95.38	68.45	130.22	94.23	110.92	64.43	66.33	57.46
Merged-chr11-70647090-3	chr11	70646568	70647568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027445)	promoter-TSS (NM_027445)	-29.0	NM_024211	67863.0	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	88.1	70.5	76.77	84.34	67.18	95.65	103.51	73.84	39.35
Merged-chr9-65460865-3	chr9	65460366	65461366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138584)	promoter-TSS (NM_138584)	-71.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	116.7	104.6	122.09	170.03	102.63	81.99	137.3	151.22	61.83
Merged-chr16-21333333-3	chr16	21332834	21333834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131983)	promoter-TSS (NR_131983)	22.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	223.1	238.23	202.56	243.57	223.92	216.22	243.98	245.84	112.42
Merged-chr10-21994613-3	chr10	21994093	21995093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011361)	promoter-TSS (NM_011361)	-73.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	179.05	170.49	124.87	238.18	160.01	176.03	203.84	179.52	138.02
Merged-chr13-55202222-3	chr13	55201713	55202713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-7569.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	117.27	145.15	84.17	155.19	151.62	130.21	160.54	207.82	84.94
Merged-chr18-4353005-3	chr18	4352498	4353498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-45.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	268.87	297.21	172.04	296.2	276.64	280.52	256.65	345.77	174.24
Merged-chr14-75032378-3	chr14	75031877	75032877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198642, exon 2 of 14)	exon (NM_198642, exon 2 of 14)	16350.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	23.45	25.8	20.35	31.71	17.26	20.09	31.69	36.26	18.74
Merged-chr7-118129693-3	chr7	118129203	118130203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019419)	promoter-TSS (NM_019419)	-78.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	271.73	250.21	232.16	231.43	247.72	212.2	223.91	248.94	162.38
Merged-chr3-58416513-3	chr3	58416022	58417022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1802.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	129.86	113.81	77.7	99.86	73.24	114.14	98.23	59.25	73.07
Merged-chr10-75473641-3	chr10	75473142	75474142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24132.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	19.45	6.91	1.85	6.75	7.0	6.43	9.51	9.29	2.5
Merged-chr13-55693025-3	chr13	55692518	55693518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181278)	promoter-TSS (NM_181278)	-106.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	273.44	218.87	241.41	275.28	166.54	229.08	272.5	182.17	171.12
Merged-chr14-63438205-3	chr14	63437740	63438740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	ID_B1|SINE|B4	1846.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	358.68	349.74	216.44	302.27	327.02	220.24	289.39	358.6	175.49
Merged-chr11-23754465-3	chr11	23753959	23754959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	16511.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	45.19	40.09	22.2	35.09	27.99	24.92	41.19	42.89	42.47
Merged-chr11-77513319-3	chr11	77512812	77513812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024920)	promoter-TSS (NM_001024920)	-39.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	32.61	29.03	37.92	37.78	29.86	41.8	40.14	29.63	14.99
Merged-chr17-65604501-3	chr17	65604007	65605007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9048.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	44.05	51.15	42.55	47.23	44.78	42.6	71.82	60.58	36.85
Merged-chr15-76080580-3	chr15	76080091	76081091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356629, intron 1 of 12)	CpG	279.0	NM_001164600	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	255.71	248.36	218.29	226.71	210.86	191.3	210.18	217.55	123.03
Merged-chr17-25861505-3	chr17	25860981	25861981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163766)	promoter-TSS (NM_001163766)	34.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	248.84	248.82	78.62	190.95	205.26	109.32	203.84	156.53	76.82
Merged-chr10-4047252-2	chr10	4046761	4047761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 17 of 27)	ID4_|SINE|ID	74186.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	9.15	16.59	5.55	14.17	25.19	19.29	11.62	3.54	5.0
Merged-chr11-104442942-3	chr11	104442442	104443442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-651.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	222.53	246.06	207.19	172.05	218.33	193.71	219.69	233.46	146.76
Merged-chr10-8875409-3	chr10	8874900	8875900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	10670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	237.97	221.64	170.19	269.21	189.87	167.19	213.35	233.46	124.28
Merged-chr13-42051299-2	chr13	42050794	42051794	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-727.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	291.75	323.93	170.19	340.73	245.38	225.86	292.56	340.47	149.26
Merged-chr4-130919440-3	chr4	130918956	130919956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	6122.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	245.41	193.99	160.94	243.57	176.81	201.75	226.02	202.51	109.29
Merged-chr14-79451837-3	chr14	79451357	79452357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	22.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	12.59	17.05	3.7	11.47	15.39	19.29	15.84	18.13	18.74
Merged-chr17-80290180-3	chr17	80289685	80290685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194269)	promoter-TSS (NM_194269)	-27.0	NM_194269	378462.0	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	27.46	29.49	26.82	33.06	33.59	37.78	36.97	23.43	27.48
Merged-chr5-3493274-3	chr5	3492784	3493784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-50549.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	62.35	49.3	14.8	76.24	63.45	65.11	45.42	46.87	35.6
Merged-chr7-110891735-3	chr7	110891256	110892256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 15 of 20)	L1MEd|LINE|L1	-13229.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	56.06	52.07	69.37	60.05	44.78	69.93	65.48	56.6	36.85
Merged-chr5-121284987-2	chr5	121284494	121285494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 11 of 75)	intron (NM_181421, intron 11 of 75)	64775.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	21.74	32.25	37.0	26.31	24.72	23.31	26.4	31.39	17.49
Merged-chr18-23843526-3	chr18	23843018	23844018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	39548.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	110.41	132.71	96.2	103.23	81.64	90.02	134.14	161.83	84.31
Merged-chr9-118612406-3	chr9	118611927	118612927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	5718.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	174.48	164.5	116.54	203.76	202.0	207.38	157.37	240.1	103.67
Merged-chr14-55591098-3	chr14	55590606	55591606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-5.0	NM_001029855	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	344.38	281.08	217.36	273.94	232.32	217.83	282.0	290.5	156.13
Merged-chr6-108466232-3	chr6	108465716	108466716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-23527.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	32.04	13.36	18.5	29.01	17.73	15.27	24.29	9.73	6.25
Merged-chr2-132029931-3	chr2	132029434	132030434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175445)	promoter-TSS (NM_175445)	54.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	24.6	27.19	49.95	51.28	65.31	73.95	31.69	52.18	38.1
Merged-chr7-113207270-3	chr7	113206754	113207754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007489)	promoter-TSS (NM_007489)	-211.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	95.53	58.98	65.67	83.66	40.59	80.38	68.65	43.33	48.09
Merged-chr18-35598591-3	chr18	35598078	35599078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-39.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	209.94	248.82	198.87	186.9	224.86	198.54	203.84	214.45	118.04
Merged-chr1-135746304-3	chr1	135745801	135746801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 3 of 5)	intron (NM_001360782, intron 3 of 5)	17134.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	164.75	117.04	64.75	100.53	62.51	35.37	145.75	130.44	95.55
Merged-chr7-81829573-3	chr7	81829066	81830066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146193)	promoter-TSS (NM_146193)	-135.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	263.14	188.0	223.84	314.42	156.28	180.05	185.89	130.88	118.66
Merged-chr10-22302526-3	chr10	22302045	22303045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4175.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	292.89	294.44	245.11	281.36	164.68	267.66	192.23	167.58	110.54
Merged-chr1-155412928-3	chr1	155412433	155413433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	4511.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	51.48	55.29	29.6	69.5	56.91	56.27	79.21	61.46	31.85
Merged-chr3-61364517-3	chr3	61364038	61365038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	31.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	115.55	157.13	179.44	131.57	123.16	123.78	145.75	159.62	134.9
Merged-chr15-58876341-3	chr15	58875824	58876824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3675.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	272.87	250.67	149.84	204.44	228.59	191.3	157.37	210.03	123.66
Merged-chr6-83572517-3	chr6	83572015	83573015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024239)	promoter-TSS (NM_024239)	-11.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	120.13	85.71	81.4	93.11	84.9	110.12	117.24	87.55	60.58
Merged-chr3-89102046-3	chr3	89101543	89102543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134469)	promoter-TSS (NM_134469)	-76.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	52.63	56.22	25.9	40.48	46.18	26.53	33.8	36.7	12.49
Merged-chr1-170976084-3	chr1	170975580	170976580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010187)	promoter-TSS (NM_010187)	-9.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	2.29	2.76	1.85	6.75	5.6	0.8	8.45	10.17	8.12
Merged-chr12-91734853-3	chr12	91734346	91735346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	51590.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	156.17	111.97	106.37	196.34	114.29	120.57	106.67	138.84	69.95
Merged-chr12-54695805-3	chr12	54695292	54696292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001331162, exon 1 of 5)	5' UTR (NM_001331162, exon 1 of 5)	102.0	NM_001331162	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	281.45	340.98	264.54	212.54	252.38	238.73	276.72	309.07	188.61
Merged-chr7-123397541-3	chr7	123397050	123398050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-10267.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	129.28	120.26	98.97	103.23	91.44	127.8	141.53	102.14	71.82
Merged-chr8-84846975-3	chr8	84846489	84847489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007591)	promoter-TSS (NM_007591)	-58.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	166.47	142.38	118.39	159.23	118.03	126.19	163.71	223.74	73.69
Merged-chr8-94857467-3	chr8	94856976	94857976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009090)	promoter-TSS (NM_009090)	26.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	135.58	104.6	60.12	138.99	129.69	77.97	160.54	121.6	51.84
Merged-chr2-164681703-3	chr2	164681221	164682221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-3386.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	26.31	37.78	44.4	62.75	42.45	57.87	53.87	57.92	38.72
Merged-chr4-129883076-3	chr4	129882507	129883507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-23219.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	68.07	53.91	49.02	58.7	41.52	54.66	80.27	50.85	63.7
Merged-chr9-72111900-3	chr9	72111389	72112389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	-70.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	123.56	96.76	69.37	126.17	119.43	68.32	143.64	95.51	60.58
Merged-chr2-19658494-3	chr2	19658013	19659013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033642)	promoter-TSS (NR_033642)	451.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	237.97	232.24	233.09	259.09	157.68	190.5	214.41	120.71	136.77
Merged-chr7-99091402-3	chr7	99090914	99091914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	49730.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	104.11	97.23	74.92	95.81	57.85	60.28	71.82	73.84	34.97
Merged-chr4-45890247-3	chr4	45889750	45890750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-53.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	16.59	6.91	12.95	12.82	10.73	14.47	7.39	8.4	9.99
Merged-chr12-102743759-3	chr12	102743261	102744261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324515)	promoter-TSS (NM_001324515)	1.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	537.16	429.91	306.16	532.35	535.09	272.48	452.05	436.86	235.45
Merged-chr1-180428145-4	chr1	180427663	180428663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55341.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	10.3	4.61	12.95	81.64	45.72	32.15	54.92	38.03	21.23
Merged-chr17-13940676-3	chr17	13940166	13941166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7707.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	39.47	28.11	18.5	47.9	40.12	43.4	29.57	30.07	8.12
Merged-chr5-143602299-3	chr5	143601799	143602799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20148.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	20.02	6.91	18.5	43.18	24.72	15.27	45.42	38.91	18.74
Merged-chr3-131643003-4	chr3	131642495	131643495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011863, exon 12 of 12)	exon (NM_011863, exon 12 of 12)	76963.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	56.63	51.61	39.77	47.9	43.39	51.44	67.6	107.89	34.97
Merged-chr2-91537790-3	chr2	91537341	91538341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165989, intron 1 of 43)	intron (NM_001165989, intron 1 of 43)	-8481.0	NM_029437	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	15.45	18.43	22.2	15.52	13.06	20.9	15.84	16.8	16.24
Merged-chr11-64832332-3	chr11	64831841	64832841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146694.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	20.02	11.98	16.65	24.29	21.93	19.29	24.29	23.43	11.87
Merged-chr4-95230663-3	chr4	95230169	95231169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178447.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	13.73	10.6	12.95	21.59	18.66	7.23	12.67	17.24	9.99
Merged-chr6-114644723-3	chr6	114644218	114645218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028835, intron 1 of 18)	intron (NM_028835, intron 1 of 18)	1621.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	184.2	240.07	127.64	200.39	195.47	148.7	200.68	246.29	98.05
Merged-chr7-43642799-3	chr7	43642303	43643303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	RLTR28|LTR|ERVL	8064.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	182.49	166.8	123.02	157.88	84.44	117.35	174.27	183.94	108.67
Merged-chr10-19933935-4	chr10	19933496	19934496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008580)	promoter-TSS (NM_008580)	-530.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	56.63	40.09	71.22	78.27	50.38	62.7	35.91	22.99	36.22
Merged-chr4-100548137-3	chr4	100547623	100548623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033773, intron 9 of 9)	intron (NM_001033773, intron 9 of 9)	69256.0	NM_001033773	381534.0	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	16.02	11.06	19.42	15.52	7.93	13.66	11.62	11.94	11.24
Merged-chr6-124806152-3	chr6	124805657	124806657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2504.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	225.39	252.05	128.57	234.8	177.27	192.91	197.51	216.66	144.89
Merged-chr15-36879842-3	chr15	36879319	36880319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82890.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	30.32	29.49	28.67	31.71	16.33	27.33	27.46	14.15	16.24
Merged-chr13-118775343-3	chr13	118774852	118775852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	60653.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	14.3	25.8	16.65	22.27	14.0	44.21	8.45	3.54	7.49
Merged-chr3-95951257-3	chr3	95950739	95951739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21982.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	683.03	600.4	369.06	719.92	589.67	464.59	577.73	645.56	292.28
Merged-chr12-116047655-3	chr12	116047172	116048172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004066)	promoter-TSS (NM_001004066)	-52.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	83.52	120.73	102.67	97.16	101.7	94.85	80.27	90.2	71.2
Merged-chr5-99979086-3	chr5	99978595	99979595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077267)	promoter-TSS (NM_001077267)	-157.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	216.24	207.81	200.71	197.69	192.67	214.61	201.73	165.81	128.03
Merged-chr1-182504459-3	chr1	182503968	182504968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	13142.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	27.46	19.35	12.02	13.49	12.6	20.9	14.79	6.63	6.25
Merged-chr3-87509327-3	chr3	87508833	87509833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16245.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	16.02	12.9	6.47	19.57	10.73	3.22	8.45	5.31	11.24
Merged-chr3-106790133-3	chr3	106789652	106790652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007651)	promoter-TSS (NM_007651)	-3.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	262.57	293.52	155.39	232.78	214.13	168.8	233.42	301.56	157.38
Merged-chr5-113634461-2	chr5	113633999	113634999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9104.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	234.54	260.34	186.84	269.21	261.24	239.53	336.92	389.11	179.86
Merged-chr8-75155081-3	chr8	75154598	75155598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	45589.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	41.76	29.03	18.5	50.6	27.52	28.94	39.08	33.16	27.48
Merged-chrUn_JH584304-65037-1	chrUn_JH584304	64537	65537	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5348.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	62.31	45.99	0.0
Merged-chr4-72195334-3	chr4	72194836	72195836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	5557.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	10.87	11.52	11.1	26.99	15.86	26.53	14.79	13.71	13.12
Merged-chr6-117917075-3	chr6	117916582	117917582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166427)	promoter-TSS (NM_001166427)	-212.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	469.66	420.7	280.26	414.95	419.39	341.61	350.65	363.46	194.23
Merged-chr1-37639303-3	chr1	37638809	37639809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	80502.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	20.59	21.2	18.5	60.05	65.31	36.17	26.4	28.74	27.48
Merged-chr7-126725310-3	chr7	126724797	126725797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-20481.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	29.17	18.89	13.87	28.34	21.93	26.53	19.01	19.9	23.73
Merged-chr5-122284349-3	chr5	122283859	122284859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177242)	promoter-TSS (NM_177242)	-39.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	137.86	83.4	98.05	130.9	56.91	66.71	126.74	67.21	61.2
Merged-chr16-17181541-3	chr16	17181020	17182020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	L3|LINE|CR1	19972.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	115.55	118.42	109.14	122.12	77.91	85.2	98.23	119.39	83.69
Merged-chr8-108901451-3	chr8	108900926	108901926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-35434.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	53.2	43.31	54.57	87.71	53.65	36.97	53.87	49.08	19.98
Merged-chr12-3418927-3	chr12	3418423	3419423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	7824.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	37.76	49.76	24.97	31.04	41.52	39.39	49.64	47.31	45.59
Merged-chr13-6648821-3	chr13	6648314	6649314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291071)	promoter-TSS (NM_001291071)	-43.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	65.79	38.25	53.65	59.38	33.12	45.01	59.15	38.47	28.1
Merged-chr2-38211633-3	chr2	38211143	38212143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	75741.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	21.17	21.66	20.35	10.8	16.79	20.09	21.12	19.01	9.37
Merged-chr13-44491095-3	chr13	44490589	44491589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51362.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	26.31	32.25	24.97	39.13	19.59	24.11	51.75	53.94	37.47
Merged-chr12-85945134-1	chr12	85944634	85945634	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	Lx9|LINE|L1	120184.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	10.87	12.44	13.87	22.27	25.66	23.31	15.84	15.03	5.0
Merged-chr13-98871350-3	chr13	98870746	98871746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	PB1D9|SINE|Alu	19796.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	55.49	48.84	35.15	66.12	34.52	34.56	30.63	52.18	14.99
Merged-chr10-63377630-3	chr10	63377106	63378106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-4837.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	7.44	3.69	0.0	4.05	3.73	1.61	8.45	6.19	1.25
Merged-chr5-137778801-3	chr5	137778275	137779275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356989)	promoter-TSS (NM_001356989)	-129.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	48.62	61.28	74.0	51.95	53.65	83.59	76.05	72.96	63.7
Merged-chr5-105558786-3	chr5	105558292	105559292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	39321.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	458.21	475.53	233.09	398.08	334.02	170.4	395.01	540.33	179.86
Merged-chr3-105023549-3	chr3	105023035	105024035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	29418.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	288.89	294.9	196.09	254.37	253.78	171.21	253.48	310.4	139.89
Merged-chr3-137864427-3	chr3	137863924	137864924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316995)	promoter-TSS (NM_001316995)	-63.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	150.45	117.96	87.87	143.71	79.31	77.16	127.8	108.33	96.8
Merged-chr6-134595078-3	chr6	134594580	134595580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-28167.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	21.74	24.88	18.5	37.78	20.99	27.33	24.29	17.24	6.87
Merged-chr6-81447925-3	chr6	81447458	81448458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	447705.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	64.64	63.59	43.47	37.78	31.72	26.53	86.61	65.44	53.71
Merged-chr11-100619148-3	chr11	100618657	100619657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	CpG	1011.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	390.14	244.22	235.86	340.73	195.47	242.74	295.73	290.95	172.37
Merged-chr2-156863984-3	chr2	156863482	156864482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026124, intron 1 of 3)	intron (NM_026124, intron 1 of 3)	860.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	254.56	282.92	222.91	315.77	246.78	284.54	279.89	311.73	181.74
Merged-chr11-58104563-3	chr11	58104058	58105058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356477, intron 1 of 6)	CpG	329.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	217.95	232.24	227.54	205.79	215.99	199.34	180.61	181.73	136.77
Merged-chr15-96627431-3	chr15	96626949	96627949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	14513.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	57.21	59.9	50.87	74.22	51.78	49.83	92.94	78.26	54.96
Merged-chr10-84577397-3	chr10	84576903	84577903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146008, intron 1 of 9)	CpG	456.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	127.57	182.01	135.97	152.49	222.99	144.68	211.24	256.46	84.94
Merged-chr17-80775397-3	chr17	80774897	80775897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-47372.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	45.76	46.54	38.85	60.05	51.32	40.19	73.93	75.17	51.21
Merged-chr2-78868898-6	chr2	78868391	78869391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009454)	promoter-TSS (NM_009454)	-156.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	117.27	71.88	55.5	109.98	52.72	38.58	108.79	37.14	28.1
Merged-chr4-155847998-1	chr4	155847498	155848498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356381, intron 1 of 15)	CpG	596.0	NM_001356381	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	38.33	39.17	54.57	45.21	19.13	26.53	49.64	28.74	19.98
Merged-chr4-101741717-3	chr4	101741214	101742214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24307.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	111.55	106.44	57.35	147.09	136.69	88.42	342.2	368.77	127.4
Merged-chr18-75924945-1	chr18	75924445	75925445	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	104767.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.14	0.92	0.0	3.37	2.33	1.61	17.96	15.03	8.12
Merged-chr6-47953406-3	chr6	47952905	47953905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178898)	promoter-TSS (NM_178898)	15.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	17.73	20.74	5.55	28.34	16.33	9.65	20.07	13.71	8.74
Merged-chr9-111059300-3	chr9	111058813	111059813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-1795.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	248.84	142.84	128.57	203.76	125.02	89.22	144.7	158.74	98.68
Merged-chr1-105976388-3	chr1	105975892	105976892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13890.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	80.09	71.88	60.12	104.58	73.71	63.5	116.18	134.42	76.19
Merged-chr7-12818789-3	chr7	12818266	12819266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026046)	promoter-TSS (NM_026046)	94.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	11.44	13.82	3.7	22.27	10.73	17.68	23.24	11.94	17.49
Merged-chr15-84988651-2	chr15	84988151	84989151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-680.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	121.28	105.06	69.37	118.75	97.97	69.93	128.85	126.02	39.97
Merged-chr10-46108995-3	chr10	46108477	46109477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135771.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	25.74	43.31	22.2	47.23	52.25	37.78	46.47	50.41	36.85
Merged-chr9-48985157-3	chr9	48984661	48985661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-224.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	113.84	116.58	92.5	134.94	140.89	113.33	134.14	122.48	58.71
Merged-chr17-15396194-3	chr17	15395701	15396701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024203)	promoter-TSS (NM_024203)	-1.0	NM_001357822	67544.0	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	117.84	149.29	74.92	85.69	94.7	86.01	107.73	106.12	84.94
Merged-chr15-8627318-3	chr15	8626801	8627801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83506.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	9.72	8.75	11.1	9.45	12.6	17.68	9.51	6.19	8.74
Merged-chr3-97932376-3	chr3	97931877	97932877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2204.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	105.26	66.81	74.0	112.0	58.31	67.52	96.11	79.15	41.22
Merged-chr5-112266385-5	chr5	112265908	112266908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	-10283.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	195.07	222.1	172.04	194.32	146.95	184.07	205.96	235.68	131.78
Merged-chr5-53401249-3	chr5	53400748	53401748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134142.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	21.74	23.04	3.7	21.59	8.86	9.65	10.56	7.52	12.49
Merged-chr3-81102334-3	chr3	81101819	81102819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	65903.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	106.97	108.28	48.1	82.32	76.97	78.77	88.72	90.64	65.58
Merged-chr1-127981238-3	chr1	127980743	127981743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	112470.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	77.23	64.97	50.87	99.86	55.98	53.85	110.9	100.81	53.71
Merged-chr18-23896809-3	chr18	23896317	23897317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57871.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	93.82	112.89	102.67	135.62	92.84	89.22	95.06	132.65	100.55
Merged-chr12-64917796-3	chr12	64917296	64918296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025605)	promoter-TSS (NM_001025605)	-115.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	26.31	8.75	1.85	43.86	10.73	17.68	25.35	10.17	7.49
Merged-chr12-111966986-3	chr12	111966444	111967444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361914)	promoter-TSS (NM_001361914)	65.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	76.08	82.48	64.75	102.56	100.3	97.26	102.45	121.15	71.2
Merged-chr18-57571473-3	chr18	57570964	57571964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-19067.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	35.47	80.64	44.4	26.31	50.85	47.42	70.76	55.27	36.85
Merged-chr11-55008388-3	chr11	55007902	55008902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 6 of 24)	L2b|LINE|L2	25069.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	39.47	34.56	28.67	103.91	57.85	45.01	39.08	38.03	19.98
Merged-chr15-38278322-3	chr15	38277832	38278832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21568.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	64.07	46.08	29.6	60.72	44.78	24.11	76.05	54.83	39.35
Merged-chr15-80255130-3	chr15	80254640	80255640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-44.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	511.42	547.41	403.28	538.42	545.35	420.38	508.03	697.3	266.05
Merged-chr8-11461131-3	chr8	11460649	11461649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-16780.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	235.69	187.08	123.94	226.71	181.47	178.44	232.36	284.31	111.17
Merged-chr19-5473890-3	chr19	5473396	5474396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-794.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	18.31	27.19	32.37	31.04	20.06	38.58	33.8	31.84	27.48
Merged-chr2-6705724-3	chr2	6705223	6706223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	15939.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	212.8	216.57	134.12	182.17	165.14	127.8	194.34	244.52	120.53
Merged-chr13-67637782-3	chr13	67637283	67638283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183146)	promoter-TSS (NM_183146)	-30.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	137.29	216.11	111.92	124.15	218.33	204.16	219.69	199.42	95.55
Merged-chr13-23621712-3	chr13	23621216	23622216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-592.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	260.28	346.05	242.34	220.63	230.46	247.57	256.65	342.68	256.68
Merged-chr11-97659189-3	chr11	97658685	97659685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4227.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	441.05	336.37	184.99	363.0	243.05	156.74	265.1	309.07	146.14
Merged-chr11-115765382-3	chr11	115764881	115765881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028014)	promoter-TSS (NM_028014)	-52.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	70.36	61.28	50.87	67.47	69.98	94.04	69.71	64.11	25.61
Merged-chr11-94544133-3	chr11	94543646	94544646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013381, exon 5 of 9)	exon (NM_001013381, exon 5 of 9)	5061.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	18.31	13.82	16.65	12.82	8.86	1.61	7.39	15.92	7.49
Merged-chr9-106892037-3	chr9	106891564	106892564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-126.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	302.04	268.18	174.82	271.91	239.32	225.06	218.63	255.57	156.13
Merged-chr10-56879889-1	chr10	56879389	56880389	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	447908.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	2.86	5.07	0.0	7.42	4.2	4.82	3.17	3.54	2.5
Merged-chr10-77515853-3	chr10	77515338	77516338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133998)	promoter-TSS (NM_133998)	-25.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	128.14	129.48	126.72	136.97	123.62	114.14	181.66	141.94	118.04
Merged-chr19-12460690-1	chr19	12460190	12461190	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010821)	promoter-TSS (NM_010821)	-89.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	186.49	146.53	97.12	177.45	105.43	159.15	245.04	250.27	128.03
Merged-chr17-24073506-3	chr17	24072987	24073987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027008)	promoter-TSS (NM_027008)	-2.0	NM_027008	69259.0	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	131.0	121.65	60.12	122.12	130.62	94.85	136.25	114.08	50.59
Merged-chr17-70707148-3	chr17	70706673	70707673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	139604.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	9.15	2.76	3.7	7.42	3.27	3.22	5.28	1.33	7.49
Merged-chr9-61914568-3	chr9	61914058	61915058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-48.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	224.25	227.63	164.64	224.01	266.38	185.68	237.64	246.73	161.13
Merged-chr15-38602351-3	chr15	38601877	38602877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-7443.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	9.72	3.69	7.4	20.92	12.13	4.82	8.45	5.31	2.5
Merged-chr13-113436483-3	chr13	113435981	113436981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	66363.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	130.43	143.3	96.2	36.43	23.79	49.03	60.2	30.07	37.47
Merged-chr15-38644423-3	chr15	38643939	38644939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17465.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	91.53	67.27	28.67	108.63	118.96	88.42	84.49	96.83	54.96
Merged-chr11-121681007-3	chr11	121680506	121681506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7855.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	23.45	19.81	43.47	34.41	19.59	28.13	35.91	35.37	15.61
Merged-chr4-56947461-3	chr4	56946949	56947949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175518)	promoter-TSS (NM_175518)	-20.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	56.06	30.87	78.62	43.18	40.59	58.68	54.92	22.55	29.35
Merged-chr16-75766952-3	chr16	75766449	75767449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030201)	promoter-TSS (NM_030201)	-131.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	186.49	182.93	101.74	159.23	141.82	98.06	161.6	180.85	96.18
Merged-chr11-68968050-3	chr11	68967554	68968554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028048)	promoter-TSS (NM_028048)	-77.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	14.3	23.04	14.8	15.52	24.72	27.33	20.07	30.95	9.99
Merged-chr5-33936451-3	chr5	33935960	33936960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-202.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	175.05	187.08	123.02	176.78	143.68	186.48	184.83	127.34	119.91
Merged-chr9-94433628-3	chr9	94433130	94434130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	104451.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	68.07	80.18	33.3	48.58	36.39	44.21	62.31	87.55	31.85
Merged-chr7-19320149-3	chr7	19319639	19320639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10094.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	258.57	148.83	37.0	201.74	91.44	53.05	140.47	111.43	54.96
Merged-chr17-20945267-3	chr17	20944756	20945756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016891)	promoter-TSS (NM_016891)	-198.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	156.17	125.79	121.17	166.66	149.75	140.66	212.29	181.73	104.3
Merged-chr10-12735918-3	chr10	12735425	12736425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 11 of 73)	intron (NM_011682, intron 11 of 73)	125810.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	16.02	17.51	23.12	27.66	17.73	12.86	29.57	25.2	18.11
Merged-chr13-14613134-3	chr13	14612632	14613632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029271)	promoter-TSS (NM_029271)	-95.0	NM_029271	75398.0	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	200.79	190.3	139.67	183.52	244.45	140.66	171.1	186.15	93.05
Merged-chr5-88764988-3	chr5	88764499	88765499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007832)	promoter-TSS (NM_007832)	-14.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	161.89	127.18	96.2	140.34	111.96	118.16	155.26	162.72	91.18
Merged-chrUn_JH584304-7128-1	chrUn_JH584304	6628	7628	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52561.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	51.75	39.35	0.0
Merged-chr18-62192212-3	chr18	62191724	62192724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12124.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	113.27	115.2	74.0	95.14	66.71	82.79	98.23	93.74	52.46
Merged-chr1-192078635-3	chr1	192078159	192079159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	13940.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	59.49	48.84	68.45	45.88	40.12	45.82	60.2	45.54	43.72
Merged-chrX-13347359-6	chrX	13346845	13347845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66323.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	49.2	40.55	38.85	45.88	30.32	52.25	63.37	53.06	38.72
Merged-chr10-15215010-1	chr10	15214510	15215510	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	454721.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	1.72	5.99	3.7	16.19	16.79	12.86	10.56	4.86	3.75
Merged-chr1-134095211-3	chr1	134094722	134095722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16020.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	233.97	237.76	148.92	196.34	176.81	206.57	212.29	267.51	151.14
Merged-chr18-84688504-3	chr18	84688020	84689020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2818.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	10.3	18.43	19.42	13.49	14.46	16.08	19.01	22.99	8.74
Merged-chr10-128547840-3	chr10	128547346	128548346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	-102.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	282.59	189.84	183.14	267.19	168.41	196.93	152.09	193.23	96.18
Merged-chr4-59803592-3	chr4	59803091	59804091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2059.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	60.64	44.7	48.1	78.94	40.12	62.7	66.54	45.99	46.22
Merged-chr13-100201921-3	chr13	100201430	100202430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	192.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	112.12	107.82	68.45	141.02	71.38	81.18	214.41	158.3	86.18
Merged-chr11-63051258-3	chr11	63050765	63051765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10394.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	73.79	70.5	66.6	79.62	61.58	73.14	104.56	110.1	73.07
Merged-chr4-53159920-3	chr4	53159421	53160421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	-26.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	200.22	115.2	112.84	206.46	122.69	156.74	180.61	185.71	83.69
Merged-chr3-108997929-3	chr3	108997431	108998431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	29676.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	38.33	52.99	49.95	30.36	21.93	28.94	34.85	38.91	43.72
Merged-chr3-87508430-3	chr3	87507922	87508922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17156.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	10.87	11.06	1.85	14.17	10.73	4.82	13.73	7.07	3.75
Merged-chr17-66123653-3	chr17	66123179	66124179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001348292, exon 1 of 27)	5' UTR (NM_001348292, exon 1 of 27)	159.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	26.31	45.16	30.52	33.74	30.79	36.97	43.3	28.3	25.61
Merged-chr8-34965771-3	chr8	34965258	34966258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175091)	promoter-TSS (NM_175091)	-68.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	126.42	83.86	56.42	88.39	70.44	70.73	98.23	45.99	78.07
Merged-chr6-128838470-3	chr6	128837969	128838969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	4.5SRNA|scRNA|scRNA	-12154.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	130.43	139.16	106.37	97.16	86.77	131.02	115.12	154.76	80.56
Merged-chr6-116679789-3	chr6	116679302	116680302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5966.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	70.36	62.67	83.25	62.07	47.58	65.91	68.65	81.36	48.71
Merged-chr11-114913073-3	chr11	114912558	114913558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21328.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	65.79	59.44	45.32	84.34	48.05	42.6	53.87	52.18	29.98
Merged-chr9-69398020-3	chr9	69397544	69398544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145618)	promoter-TSS (NM_145618)	46.0	NM_145618	93697.0	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	209.37	263.11	155.39	238.85	294.83	204.16	231.3	190.13	130.53
Merged-chr1-195092346-3	chr1	195091805	195092805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132621)	promoter-TSS (NR_132621)	-57.0	NM_010778	17221.0	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	26.89	13.36	10.17	24.29	23.79	13.66	19.01	12.82	6.25
Merged-chr4-101686565-3	chr4	101686055	101687055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30852.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	23.45	40.09	37.0	49.93	52.72	101.28	65.48	75.17	34.35
Merged-chr18-32361592-3	chr18	32361070	32362070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-15647.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	118.42	104.6	55.5	95.14	50.85	44.21	67.6	101.26	47.46
Merged-chrX-105064455-3	chrX	105063949	105064949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015467, intron 4 of 4)	intron (NR_015467, intron 4 of 4)	5675.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	44.62	42.39	44.4	49.93	54.58	59.48	67.6	59.25	41.22
Merged-chr19-56723425-3	chr19	56722919	56723919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	1047.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	190.49	167.26	131.34	174.75	147.88	195.32	201.73	154.76	118.66
Merged-chr14-20826166-1	chr14	20825666	20826666	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-10496.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	114.41	137.77	76.77	169.35	128.76	100.47	177.44	187.92	94.3
Merged-chr5-140505513-3	chr5	140505025	140506025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021528)	promoter-TSS (NM_021528)	-84.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	24.6	23.96	31.45	32.39	27.99	28.13	38.02	27.41	31.23
Merged-chr2-170252843-3	chr2	170252315	170253315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103546.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	40.04	41.47	27.75	42.51	34.99	36.97	45.42	37.14	19.98
Merged-chr9-100570138-3	chr9	100569634	100570634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	951.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	24.03	10.6	10.17	43.18	34.52	16.08	31.69	12.82	6.25
Merged-chr18-30507185-3	chr18	30506673	30507673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	234308.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	145.3	193.99	88.8	78.27	88.17	46.62	121.46	177.31	61.2
Merged-chr12-104752129-3	chr12	104751637	104752637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148948)	promoter-TSS (NM_148948)	-185.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	121.28	99.07	98.97	92.44	65.31	61.89	90.83	37.14	56.21
Merged-chr10-96332972-3	chr10	96332475	96333475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	106768.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	324.35	333.61	205.34	305.65	309.76	248.37	315.8	380.26	189.86
Merged-chr15-36173979-3	chr15	36173489	36174489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023127)	promoter-TSS (NM_023127)	-21.0	NM_023127	17749.0	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	66.36	91.24	59.2	67.47	71.84	86.81	95.06	107.89	76.82
Merged-chr10-78134611-3	chr10	78134108	78135108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35160.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	53.77	31.79	24.97	46.56	28.46	31.35	35.91	34.05	27.48
Merged-chr11-26637898-2	chr11	26637406	26638406	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43986.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	14.87	10.14	9.25	58.7	31.72	19.29	96.11	91.09	53.71
Merged-chr17-6746202-3	chr17	6745701	6746701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	36579.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	149.31	117.04	42.55	169.35	96.1	65.91	87.66	72.52	56.21
Merged-chr1-144006709-3	chr1	144006215	144007215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2566.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	112.69	124.87	38.85	101.21	111.03	65.91	106.67	133.09	46.84
Merged-chr16-95724360-3	chr16	95723843	95724843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	21936.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	37.76	34.1	13.87	39.81	25.19	15.27	35.91	21.67	22.48
Merged-chr16-75887010-1	chr16	75886510	75887510	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22256.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	87.52	100.45	48.1	78.27	63.91	65.91	98.23	102.58	64.95
Merged-chr9-83536258-3	chr9	83535727	83536727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12111.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	78.37	65.43	37.0	72.87	66.24	81.18	87.66	76.05	47.46
Merged-chr14-21745289-3	chr14	21744779	21745779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 3 of 7)	MER91C|DNA|hAT-Tip100	-2400.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	20.59	5.07	11.1	22.94	11.2	11.25	19.01	13.27	3.75
Merged-chr19-42564113-3	chr19	42563568	42564568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177464, exon 2 of 7)	exon (NM_177464, exon 2 of 7)	45263.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	37.18	39.63	34.22	33.74	32.66	34.56	40.14	38.03	29.35
Merged-chr1-118389388-3	chr1	118388897	118389897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359346, exon 1 of 38)	5' UTR (NM_001359346, exon 1 of 38)	339.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	97.25	135.01	72.15	77.59	99.37	92.44	97.17	131.32	82.44
Merged-chr1-171370045-3	chr1	171369550	171370550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027893)	promoter-TSS (NM_027893)	-123.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	102.97	94.92	65.67	71.52	53.18	37.78	57.03	37.58	32.48
Merged-chr10-86021837-3	chr10	86021351	86022351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153195)	promoter-TSS (NM_153195)	-78.0	NM_153195	69754.0	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	167.04	187.54	148.92	190.27	179.61	196.12	199.62	168.47	112.42
Merged-chr11-17008703-3	chr11	17008204	17009204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019549)	promoter-TSS (NM_019549)	14.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	202.51	151.14	87.87	201.07	143.68	145.49	128.85	190.13	87.43
Merged-chrX-99049423-3	chrX	99048926	99049926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	6845.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	16.59	14.28	14.8	18.89	17.26	22.51	9.51	11.94	12.49
Merged-chr18-75018719-3	chr18	75018215	75019215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027727)	promoter-TSS (NM_027727)	-57.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	72.65	57.14	77.7	88.39	92.37	107.71	84.49	58.81	44.97
Merged-chr6-108659958-3	chr6	108659463	108660463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-666.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	602.94	416.09	327.43	645.03	441.32	347.24	420.36	451.45	200.47
Merged-chr17-80206803-2	chr17	80206316	80207316	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360435, intron 1 of 6)	CpG	489.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	169.9	184.77	160.02	204.44	162.34	188.09	168.99	153.43	148.64
Merged-chr5-125465828-3	chr5	125465318	125466318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10055.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	13.16	13.82	1.85	16.19	7.0	12.86	20.07	11.05	12.49
Merged-chr15-81585250-3	chr15	81584750	81585750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-964.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	296.32	270.94	256.21	247.62	182.87	245.96	259.82	276.8	190.48
Merged-chr5-105745523-3	chr5	105745045	105746045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	44735.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	16.59	18.89	6.47	23.62	16.33	16.08	30.63	13.27	17.49
Merged-chr19-9993215-3	chr19	9992722	9993722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 3 of 11)	intron (NM_011913, intron 3 of 11)	8411.0	NM_011913	24115.0	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	13.73	8.75	3.7	10.8	6.53	4.82	8.45	9.29	11.24
Merged-chr9-73113455-3	chr9	73112941	73113941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-28.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	128.71	164.96	121.17	108.63	127.36	108.51	137.3	150.78	103.05
Merged-chr11-87591978-3	chr11	87591461	87592461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-205.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	198.5	171.87	86.02	170.03	138.55	124.59	151.03	184.83	110.54
Merged-chr2-32395917-6	chr2	32395384	32396384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	-6.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	112.12	94.92	94.35	101.21	91.9	100.47	121.46	104.35	75.57
Merged-chr3-101597903-3	chr3	101597395	101598395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	6812.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	163.04	197.68	130.42	153.84	113.36	133.43	173.21	169.35	118.66
Merged-chr6-127561739-3	chr6	127561236	127562236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-16239.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	13.16	5.07	8.32	8.1	10.26	12.86	20.07	7.96	6.25
Merged-chr12-54985135-3	chr12	54984631	54985631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 2 of 26)	CpG	1205.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	189.35	167.26	204.41	204.44	127.36	151.92	193.28	111.87	131.15
Merged-chr15-84235866-3	chr15	84235369	84236369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3826.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	131.57	104.6	85.1	134.94	92.84	108.51	137.3	106.56	87.43
Merged-chr5-45669802-3	chr5	45669294	45670294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	-86.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	47.48	38.25	49.95	39.81	48.98	34.56	46.47	51.29	21.23
Merged-chr5-140616863-3	chr5	140616373	140617373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9532.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	326.64	327.16	250.66	346.8	269.18	222.65	317.91	420.94	199.85
Merged-chr8-94098487-3	chr8	94097985	94098985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026116, exon 1 of 17)	5' UTR (NM_026116, exon 1 of 17)	326.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	119.56	125.79	72.15	97.16	114.29	85.2	85.55	75.17	52.46
Merged-chr8-84415281-2	chr8	84414821	84415821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-43.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	145.87	137.31	150.77	179.47	88.64	118.96	2.11	0.44	2.5
Merged-chr1-184732766-3	chr1	184732295	184733295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-302.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	159.03	178.78	130.42	151.14	144.15	143.88	129.91	141.94	145.51
Merged-chr11-3177415-3	chr11	3176914	3177914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	16049.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	61.78	79.72	150.77	74.22	106.36	166.38	1.06	0.44	168.0
Merged-chr2-155381789-3	chr2	155381282	155382282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178111)	promoter-TSS (NM_178111)	-74.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	513.7	428.07	300.61	537.08	433.85	304.64	340.09	474.0	232.32
Merged-chr8-123983025-3	chr8	123982510	123983510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019552, exon 1 of 13)	5' UTR (NM_019552, exon 1 of 13)	112.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	46.91	41.47	55.5	47.23	46.18	77.97	55.98	40.24	41.84
Merged-chr15-79403276-3	chr15	79402778	79403778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253817)	promoter-TSS (NM_001253817)	0.0	NM_001253819	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	316.92	239.15	165.57	254.37	270.57	188.89	309.46	303.77	114.29
Merged-chr12-108631263-3	chr12	108630767	108631767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	L1MEc|LINE|L1	-4486.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	80.66	114.27	61.05	98.51	62.51	70.73	69.71	77.82	61.2
Merged-chr6-29917042-3	chr6	29916542	29917542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104576)	promoter-TSS (NR_104576)	29.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	14.3	3.69	3.7	4.72	2.8	5.63	4.22	7.07	3.75
Merged-chr8-47917870-3	chr8	47917378	47918378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	72673.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	9.72	6.91	9.25	7.42	4.2	13.66	9.51	7.07	4.37
Merged-chr9-95572784-3	chr9	95572270	95573270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12953.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	157.89	132.25	116.54	197.69	114.76	129.41	188.0	217.99	89.31
Merged-chr11-3164170-2	chr11	3163665	3164665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	B2_Mm2|SINE|B2	29298.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	64.64	100.91	134.12	88.39	118.49	159.15	1.06	0.88	160.5
Merged-chr19-5952191-3	chr19	5951706	5952706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 7 of 17)	PB1D10|SINE|Alu	12000.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	124.71	82.48	61.97	93.11	60.65	68.32	84.49	95.51	62.45
Merged-chr4-155831526-3	chr4	155830972	155831972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025338, exon 1 of 4)	5' UTR (NM_025338, exon 1 of 4)	203.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	117.27	112.43	112.84	92.44	91.44	109.32	137.3	135.3	90.56
Merged-chr9-65021697-3	chr9	65021179	65022179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021345)	promoter-TSS (NM_021345)	38.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	136.72	130.4	95.27	147.76	156.75	129.41	142.59	128.67	91.18
Merged-chrX-72918480-3	chrX	72917992	72918992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019405)	promoter-TSS (NM_019405)	-29.0	NM_010941	18194.0	Mm.38792	NM_010941	ENSMUSG00000031349	Nsdhl	AI747449|Bpa|H105E3|Str|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding	27.46	29.49	25.9	22.27	26.59	26.53	25.35	36.7	14.99
Merged-chr9-15709535-3	chr9	15709050	15710050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357565)	promoter-TSS (NM_001357565)	-188.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	318.06	273.25	274.71	426.42	361.08	335.98	317.91	331.18	181.11
Merged-chr7-118705771-3	chr7	118705273	118706273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-35.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	106.4	92.16	49.95	176.78	152.08	98.87	240.81	266.63	119.91
Merged-chr4-149307829-3	chr4	149307303	149308303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290995)	promoter-TSS (NM_001290995)	-70.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	180.2	145.15	132.27	203.09	112.43	116.55	108.79	84.9	71.2
Merged-chr7-135715833-3	chr7	135715327	135716327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 1 of 13)	intron (NM_001081117, intron 1 of 13)	552.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	66.36	96.3	68.45	78.94	37.79	53.85	107.73	122.48	58.71
Merged-chr2-4919468-1	chr2	4918968	4919968	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010726, intron 1 of 8)	intron (NM_010726, intron 1 of 8)	472.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	86.38	114.74	63.82	255.04	276.64	232.29	152.09	149.89	70.57
Merged-chr8-84908662-3	chr8	84908149	84909149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	25.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	260.28	266.33	142.44	327.24	279.44	181.66	326.36	376.28	108.04
Merged-chr19-3323328-3	chr19	3322822	3323822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	21.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	208.8	225.32	201.64	183.52	202.93	226.67	212.29	239.21	170.5
Merged-chr13-37858028-4	chr13	37857451	37858451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-30483.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	200.22	170.95	110.07	200.39	182.87	187.28	161.6	208.26	89.93
Merged-chr1-77515203-3	chr1	77514714	77515714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-126.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	8.58	7.83	1.85	8.1	7.0	2.41	4.22	4.42	2.5
Merged-chr2-30133216-3	chr2	30132709	30133709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-537.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	434.19	490.27	268.24	398.76	362.94	293.38	376.0	510.26	179.24
Merged-chr8-81767877-3	chr8	81767382	81768382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	425320.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	58.35	48.38	33.3	42.51	58.31	44.21	25.35	29.63	33.1
Merged-chr19-3911878-3	chr19	3911383	3912383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271443, intron 1 of 6)	intron (NM_001271443, intron 1 of 6)	891.0	NM_144870	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	146.45	130.86	68.45	137.64	94.7	86.81	154.2	163.6	58.08
Merged-chr10-40247030-3	chr10	40246531	40247531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023323)	promoter-TSS (NM_023323)	8.0	NM_023323	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	94.39	126.25	120.24	111.33	123.62	116.55	107.73	149.45	77.44
Merged-chr7-99828386-3	chr7	99827886	99828886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016720)	promoter-TSS (NM_016720)	31.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	22.88	12.9	15.72	7.42	12.6	11.25	22.18	19.01	23.73
Merged-chr19-61199787-3	chr19	61199287	61200287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23478.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	333.51	667.22	101.74	377.17	631.65	179.24	494.29	602.23	118.04
Merged-chr19-47731645-3	chr19	47731149	47732149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-107.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	255.14	248.82	221.06	205.11	210.4	220.24	168.99	154.32	130.53
Merged-chrX-59817927-3	chrX	59817430	59818430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON4|Unknown|Unknown	-181534.0	NM_007979	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	16.02	20.74	12.95	20.24	22.86	24.11	25.35	14.59	35.6
Merged-chr5-124552850-3	chr5	124552388	124553388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026409)	promoter-TSS (NM_026409)	24.0	NM_026409	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	136.72	112.89	84.17	116.73	97.03	77.97	104.56	103.91	43.72
Merged-chr13-97559852-3	chr13	97559330	97560330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-170.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	113.27	115.66	73.07	115.38	82.11	99.67	111.96	106.12	71.2
Merged-chr15-80117357-3	chr15	80116862	80117862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_207708, exon 4 of 4)	3' UTR (NM_207708, exon 4 of 4)	-15792.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	6.86	4.61	5.55	8.77	5.13	5.63	9.51	3.1	1.25
Merged-chr5-136170202-3	chr5	136169696	136170696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178751, intron 1 of 2)	intron (NM_178751, intron 1 of 2)	460.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	127.57	77.41	78.62	172.73	89.57	114.14	137.3	83.13	42.47
Merged-chr4-141147544-3	chr4	141147057	141148057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-365.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	247.7	231.31	197.02	232.78	235.59	219.43	231.3	275.03	139.89
Merged-chr13-21506372-3	chr13	21505903	21506903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026798, intron 1 of 1)	intron (NR_026798, intron 1 of 1)	121.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	4.0	4.61	3.7	11.47	4.2	9.65	4.22	8.84	9.37
Merged-chr1-45925576-3	chr1	45925078	45926078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	16.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	116.7	124.41	72.15	105.26	107.76	133.43	115.12	142.38	54.33
Merged-chr10-94923460-3	chr10	94922971	94923971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	21107.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	49.2	35.48	24.05	64.77	35.45	45.82	22.18	37.58	13.12
Merged-chr2-164071209-3	chr2	164070685	164071685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291155)	promoter-TSS (NM_001291155)	-16.0	NM_001291155	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	134.43	110.59	123.94	126.17	124.09	155.13	125.69	109.66	103.05
Merged-chr11-79225091-3	chr11	79224600	79225600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17924.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	189.35	159.43	124.87	202.42	181.01	160.76	232.36	262.21	152.38
Merged-chr17-35740582-3	chr17	35740145	35741145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31805.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	62.35	30.41	45.32	41.83	14.0	18.49	65.48	89.76	49.34
Merged-chr15-74721092-3	chr15	74720595	74721595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198607)	promoter-TSS (NM_198607)	-139.0	NM_198607	223626.0	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	18.31	8.29	14.8	16.87	15.39	14.47	19.01	17.24	8.12
Merged-chr2-3713395-3	chr2	3712896	3713896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025626)	promoter-TSS (NM_025626)	-62.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	128.71	119.34	66.6	104.58	83.51	60.28	74.99	78.26	63.7
Merged-chr4-41760434-3	chr4	41759925	41760925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172054)	promoter-TSS (NM_001172054)	-18.0	NM_001163401	16157.0	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	29.17	28.57	42.55	35.09	34.52	42.6	62.31	55.27	41.84
Merged-chr6-91441421-3	chr6	91440921	91441921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	434.0	NR_038153	69798.0	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	143.01	129.02	102.67	147.09	139.02	130.21	151.03	161.83	49.34
Merged-chr8-84197691-3	chr8	84197184	84198184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10834.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	343.8	232.24	154.47	315.77	235.12	181.66	224.97	213.12	163.0
Merged-chr3-106785316-3	chr3	106784787	106785787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	4862.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	160.75	160.81	118.39	144.39	121.76	91.63	145.75	141.49	78.69
Merged-chr11-116018318-3	chr11	116017827	116018827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5608.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	13.16	3.23	3.7	15.52	0.47	11.25	2.11	7.07	3.75
Merged-chr14-73385325-3	chr14	73384823	73385823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008410)	promoter-TSS (NM_008410)	-34.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	312.34	320.71	244.19	294.18	263.58	279.72	294.68	328.09	238.57
Merged-chr1-171050993-3	chr1	171050494	171051494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010188)	TTS (NM_010188)	8400.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	17.16	18.89	30.52	22.94	32.19	35.37	31.69	21.67	17.49
Merged-chr12-79191904-3	chr12	79191405	79192405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-50.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	10.3	8.29	17.57	13.49	18.66	22.51	17.96	18.57	5.0
Merged-chr1-191180615-3	chr1	191180136	191181136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	2697.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	110.41	125.33	72.15	101.21	82.11	56.27	135.19	124.69	65.58
Merged-chr13-102684892-3	chr13	102684382	102685382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8665.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	79.52	92.16	83.25	96.48	60.65	70.73	85.55	89.76	58.71
Merged-chr1-127225254-3	chr1	127224765	127225765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20279.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	88.1	83.4	64.75	95.81	89.57	81.99	92.94	94.62	54.96
Merged-chr14-55793615-3	chr14	55793103	55794103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4746.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	199.65	186.16	121.17	138.32	111.96	147.09	167.93	200.74	79.94
Merged-chr14-104995794-3	chr14	104995308	104996308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A1|LTR|ERVL	118868.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	8.58	8.29	15.72	10.12	9.33	8.84	5.28	9.29	8.12
Merged-chr3-90514417-3	chr3	90513925	90514925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	-10.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	42.33	36.4	43.47	27.66	24.72	24.92	46.47	31.84	26.85
Merged-chr11-100850575-3	chr11	100850070	100851070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	15.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	274.01	178.32	201.64	280.01	124.56	151.11	255.6	179.96	129.9
Merged-chr9-118674418-3	chr9	118673934	118674934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-37258.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	302.04	207.35	131.34	255.04	195.93	175.23	185.89	184.38	93.68
Merged-chr4-62630150-3	chr4	62629642	62630642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	10470.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	64.64	45.16	56.42	72.19	30.79	36.97	43.3	34.93	29.35
Merged-chr2-119896856-1	chr2	119896356	119897356	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	-372.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	161.89	147.91	97.12	133.59	136.69	103.69	145.75	135.3	68.07
Merged-chr11-120353816-3	chr11	120353322	120354322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5144.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	340.94	181.55	156.32	276.63	172.61	205.77	230.25	218.43	118.66
Merged-chr3-19628746-3	chr3	19628238	19629238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15722.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	295.18	333.15	255.29	319.82	282.24	227.47	285.17	394.86	148.64
Merged-chr12-100925192-3	chr12	100924690	100925690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-16992.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	101.25	90.77	29.6	136.29	111.5	69.93	55.98	58.81	29.35
Merged-chr1-131473983-3	chr1	131473482	131474482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	53379.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	59.49	54.83	56.42	49.93	24.26	55.46	52.81	47.75	44.97
Merged-chr6-32528272-3	chr6	32527787	32528787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	17146.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	33.18	34.1	22.2	57.35	40.59	36.17	21.12	26.53	14.99
Merged-chr19-6157375-3	chr19	6156873	6157873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7066.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	94.96	63.59	73.07	58.03	70.44	55.46	63.37	79.59	34.97
Merged-chr5-129008594-3	chr5	129008087	129009087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007941)	promoter-TSS (NM_007941)	-15.0	NM_007941	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	42.33	43.31	50.87	64.77	50.38	62.7	57.03	42.01	33.1
Merged-chr5-95935221-3	chr5	95934721	95935721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21718.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	51.48	63.13	42.55	49.25	48.05	69.13	33.8	30.51	44.97
Merged-chr7-143473672-3	chr7	143473179	143474179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008767)	promoter-TSS (NM_008767)	-76.0	NM_008767	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	8.58	17.05	11.1	9.45	10.73	20.9	19.01	15.92	12.49
Merged-chr17-24804305-3	chr17	24803788	24804788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029197)	promoter-TSS (NM_029197)	-94.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	36.61	26.73	20.35	51.28	32.66	35.37	13.73	17.24	8.74
Merged-chr14-52267543-1	chr14	52267043	52268043	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172601, intron 5 of 7)	L1MB3|LINE|L1	-11603.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.0	0.46	0.0	1.35	0.47	1.61	57.03	59.69	49.34
Merged-chr12-118301378-3	chr12	118300888	118301888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	52.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	323.78	338.22	263.61	298.9	328.42	246.76	270.38	335.6	180.49
Merged-chr4-53196177-3	chr4	53195695	53196695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36300.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	69.79	74.19	39.77	77.59	69.51	90.83	90.83	95.51	34.35
Merged-chr8-53434467-3	chr8	53433978	53434978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-77224.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	3.43	6.91	12.95	5.4	9.33	9.65	4.22	6.63	8.74
Merged-chr4-107364321-3	chr4	107363815	107364815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3469.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	28.6	44.24	22.2	29.01	22.39	40.99	26.4	22.11	33.1
Merged-chr7-16816305-3	chr7	16815794	16816794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133789, exon 1 of 18)	5' UTR (NM_133789, exon 1 of 18)	405.0	NM_001039878	97387.0	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	57.21	54.83	65.67	63.42	48.52	98.87	62.31	37.14	53.71
Merged-chr7-143043131-3	chr7	143042626	143043626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-9624.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	44.62	65.43	32.37	70.17	54.11	67.52	77.1	65.44	46.84
Merged-chr1-86059595-3	chr1	86059111	86060111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5008.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	20.59	13.36	14.8	12.82	14.93	12.06	15.84	8.4	13.74
Merged-chr13-113500769-3	chr13	113500266	113501266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	2078.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	17.73	15.67	26.82	24.29	14.93	32.96	25.35	32.72	13.74
Merged-chr14-77850069-3	chr14	77849586	77850586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24831.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	194.5	155.75	92.5	187.57	140.89	143.07	224.97	239.21	102.42
Merged-chr17-53569903-3	chr17	53569397	53570397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	2926.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	121.85	115.2	125.79	100.53	79.31	73.95	175.33	161.83	99.3
Merged-chr7-25278953-3	chr7	25278474	25279474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3205.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	259.14	221.64	212.74	253.02	221.13	209.79	257.71	236.56	139.89
Merged-chr18-66474015-3	chr18	66473514	66474514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15410.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	30.89	28.11	12.95	69.5	36.39	72.34	61.26	69.86	51.84
Merged-chrX-23692955-3	chrX	23692428	23693428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305675)	promoter-TSS (NM_001305675)	-123.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	40.62	39.17	45.32	43.18	29.39	36.97	54.92	45.54	46.84
Merged-chrX-142370136-3	chrX	142369642	142370642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	20393.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	103.54	120.26	68.45	122.8	88.17	85.2	136.25	157.41	51.84
Merged-chr18-66458576-3	chr18	66458081	66459081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-23.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	438.77	456.18	304.31	493.22	525.29	308.65	333.75	432.88	209.84
Merged-chr9-108662134-3	chr9	108661649	108662649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020520)	promoter-TSS (NM_020520)	51.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	63.5	48.84	60.12	66.8	41.05	70.73	40.14	23.43	36.22
Merged-chr13-52572088-3	chr13	52571575	52572575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	1150.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	255.71	223.48	133.19	279.33	203.4	192.91	232.36	234.35	93.68
Merged-chr1-155483833-3	chr1	155483336	155484336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	43275.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	50.91	41.47	17.57	51.28	29.39	29.74	52.81	40.68	43.72
Merged-chr12-77238059-3	chr12	77237562	77238562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016893)	promoter-TSS (NM_016893)	-42.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	31.46	42.85	39.77	43.18	69.04	48.23	49.64	45.54	31.23
Merged-chr19-6869586-3	chr19	6869076	6870076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-11365.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	89.24	103.68	98.97	78.94	59.71	85.2	122.52	112.75	74.32
Merged-chr15-98763257-3	chr15	98762766	98763766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007478)	promoter-TSS (NM_007478)	-148.0	NM_007478	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	129.28	92.16	133.19	88.39	52.72	86.01	80.27	74.73	68.07
Merged-chr2-155819788-1	chr2	155819288	155820288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-585.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	90.38	95.38	134.12	45.21	49.45	102.88	100.34	106.12	79.32
Merged-chr5-148483445-3	chr5	148482912	148483912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68261.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	61.21	41.01	35.15	59.38	34.06	40.19	59.15	40.24	33.1
Merged-chr14-47351054-3	chr14	47350544	47351544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22816.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	325.5	328.08	188.69	333.31	316.76	264.45	224.97	259.99	105.55
Merged-chr9-44605232-5	chr9	44604713	44605713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357703, exon 1 of 14)	intron (NM_001110826, intron 1 of 13)	321.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	384.99	460.32	501.32	375.14	409.59	359.29	382.34	394.86	340.37
Merged-chr2-61593092-3	chr2	61592588	61593588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164071)	promoter-TSS (NM_001164071)	-9.0	NR_149324	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	458.79	470.0	331.13	443.96	415.19	344.02	388.68	423.15	227.33
Merged-chr10-111997217-3	chr10	111996720	111997720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028608)	promoter-TSS (NM_028608)	44.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	138.44	152.98	88.8	141.02	159.55	114.14	106.67	158.3	54.33
Merged-chr17-80323920-2	chr17	80323400	80324400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145452, intron 1 of 17)	intron (NM_001145452, intron 1 of 17)	16493.0	NM_001145452	381112.0	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.0	1.84	7.4	20.92	8.86	20.09	9.51	11.94	10.62
Merged-chr7-98328532-3	chr7	98328021	98329021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-7313.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	96.68	74.65	72.15	85.69	53.18	71.54	41.19	39.35	38.1
Merged-chr13-69535407-1	chr13	69534907	69535907	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	318.06	334.53	196.09	350.85	369.01	274.09	182.72	173.77	74.32
Merged-chr12-112672043-1	chr12	112671543	112672543	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2233.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	17.16	13.82	22.2	14.84	16.33	24.11	16.9	15.48	16.24
Merged-chr9-21367647-3	chr9	21367131	21368131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010561)	promoter-TSS (NM_010561)	-240.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	95.53	129.02	106.37	107.28	100.3	135.84	135.19	156.09	68.7
Merged-chr15-79768490-3	chr15	79768003	79769003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017470, intron 1 of 3)	intron (NM_017470, intron 1 of 3)	5964.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	60.07	57.14	50.87	60.05	77.44	38.58	54.92	31.39	36.85
Merged-chr19-53313887-3	chr19	53313358	53314358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	2413.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	361.54	317.48	199.79	418.32	335.89	245.96	239.75	293.16	144.27
Merged-chrX-50972347-3	chrX	50971843	50972843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29633.0	NM_001190332	385354.0	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	14.3	38.25	17.57	24.29	18.19	21.7	28.52	35.82	18.11
Merged-chr17-39846554-3	chr17	39846052	39847052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	3555.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	255.71	250.67	274.71	136.97	96.1	162.37	103.51	60.13	217.96
Merged-chr11-97629792-3	chr11	97629294	97630294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175332)	promoter-TSS (NM_175332)	-78.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	42.9	26.73	23.12	23.62	14.93	16.08	31.69	11.05	22.48
Merged-chr9-25151343-1	chr9	25150843	25151843	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020586, exon 1 of 8)	5' UTR (NM_020586, exon 1 of 8)	438.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	339.23	294.9	283.04	267.19	265.91	252.39	310.52	225.06	219.83
Merged-chr8-119440599-3	chr8	119440115	119441115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	3453.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	47.48	42.39	45.32	62.75	28.92	50.64	51.75	33.16	41.22
Merged-chr14-33248745-3	chr14	33248239	33249239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31916.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	71.51	67.74	43.47	110.65	108.23	57.87	26.4	26.53	36.85
Merged-chr17-29492939-3	chr17	29492453	29493453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008842, intron 4 of 5)	intron (NM_008842, intron 4 of 5)	1908.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	129.86	146.99	74.92	79.62	54.58	61.09	110.9	126.9	77.44
Merged-chr13-22041354-3	chr13	22040856	22041856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175656)	promoter-TSS (NM_175656)	6.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	78.94	121.65	98.97	76.24	76.97	113.33	110.9	133.53	102.42
Merged-chr16-32003189-3	chr16	32002678	32003678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177103, exon 1 of 10)	5' UTR (NM_177103, exon 1 of 10)	109.0	NM_001357087	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	362.68	316.1	216.44	398.76	360.14	263.64	316.86	293.6	123.03
Merged-chr15-80072216-3	chr15	80071719	80072719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6360.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	67.5	62.21	88.8	109.98	67.18	103.69	76.05	96.39	70.57
Merged-chr10-8519036-3	chr10	8518530	8519530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177387)	promoter-TSS (NM_177387)	-205.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	160.18	194.45	138.74	151.14	136.22	102.88	120.41	142.82	98.68
Merged-chr13-94358973-3	chr13	94358501	94359501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	41.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	243.12	224.4	202.56	203.76	188.0	185.68	199.62	197.65	106.79
Merged-chr5-122158245-3	chr5	122157756	122158756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013636)	promoter-TSS (NM_013636)	-23.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	89.81	43.31	68.45	77.59	58.78	88.42	81.33	49.96	43.72
Merged-chr3-90248868-3	chr3	90248359	90249359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013901, intron 1 of 3)	intron (NM_013901, intron 1 of 3)	667.0	NM_013901	30791.0	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	422.75	393.05	243.26	407.53	351.75	317.5	364.38	425.81	247.31
Merged-chr19-12463904-3	chr19	12463404	12464404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3125.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	365.54	382.91	234.01	398.76	385.8	286.95	402.41	428.02	210.47
Merged-chr16-91917954-3	chr16	91917456	91918456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	13674.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	29.17	26.26	7.4	38.46	23.79	21.7	41.19	34.93	19.98
Merged-chr13-65242032-3	chr13	65241516	65242516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36300.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	77.23	67.27	49.02	66.12	72.31	73.95	205.96	187.04	62.45
Merged-chr8-123224877-3	chr8	123224416	123225416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194446)	promoter-TSS (NM_194446)	75.0	NM_194444	234854.0	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	64.07	84.32	82.32	58.03	52.72	84.4	74.99	88.88	33.72
Merged-chr8-13660454-3	chr8	13659936	13660936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	17151.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	89.81	62.21	56.42	143.71	104.96	62.7	95.06	83.57	34.97
Merged-chr19-7057856-3	chr19	7057346	7058346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	1078.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	28.03	31.79	34.22	37.78	16.79	42.6	32.74	30.51	24.98
Merged-chr3-52267958-1	chr3	52267458	52268458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019739)	promoter-TSS (NM_019739)	-379.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	32.04	23.04	26.82	22.27	20.06	37.78	20.07	29.63	16.24
Merged-chr2-6322742-3	chr2	6322234	6323234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080548)	promoter-TSS (NM_001080548)	-23.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	177.91	120.26	111.92	222.66	129.22	99.67	170.05	94.62	66.82
Merged-chr17-67343145-3	chr17	67342657	67343657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	11302.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	125.28	123.49	84.17	170.03	135.75	96.45	118.29	117.62	69.95
Merged-chr18-54991273-3	chr18	54990767	54991767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	-1087.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	196.79	190.3	102.67	197.02	146.48	110.12	176.38	218.43	94.3
Merged-chr11-68514141-3	chr11	68513623	68514623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	MurERV4-int|LTR|ERVK	11104.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	26.89	37.78	36.07	34.41	23.79	31.35	31.69	18.13	28.1
Merged-chr4-3510846-3	chr4	3510329	3511329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26261.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	72.65	61.75	42.55	93.79	73.24	54.66	138.36	176.42	91.18
Merged-chr7-110689512-3	chr7	110689018	110690018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61861.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	22.88	8.75	1.85	35.09	16.79	46.62	31.69	38.03	23.73
Merged-chr19-6276094-3	chr19	6275581	6276581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-815.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	330.07	243.75	191.47	310.37	196.87	176.03	228.14	249.82	131.15
Merged-chr10-100487454-3	chr10	100486957	100487957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110013)	promoter-TSS (NM_001110013)	-110.0	NM_001110013	237500.0	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	24.03	19.81	29.6	27.66	23.79	28.13	35.91	22.55	11.24
Merged-chr10-68204050-2	chr10	68203556	68204556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74670.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	85.81	76.49	61.97	112.68	84.44	94.04	10.56	3.54	1.25
Merged-chr11-78791656-3	chr11	78791132	78792132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34963.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	21.17	11.06	11.1	13.49	21.46	25.72	17.96	13.71	16.86
Merged-chr1-36471496-3	chr1	36470988	36471988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033570)	promoter-TSS (NM_033570)	-109.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	139.01	116.58	109.14	138.99	108.7	144.68	138.36	118.5	64.95
Merged-chr10-40847422-3	chr10	40846915	40847915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027879, intron 7 of 14)	intron (NM_027879, intron 7 of 14)	35728.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	34.9	31.33	48.1	36.43	30.79	37.78	49.64	44.22	32.48
Merged-chr1-86527085-1	chr1	86526585	86527585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	528.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	257.42	220.25	265.46	242.22	217.86	218.63	218.63	205.17	179.86
Merged-chr8-11009618-3	chr8	11009106	11010106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	CpG-13826	-1176.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	224.82	158.51	151.69	269.21	169.34	167.19	166.88	76.49	71.2
Merged-chr14-56812912-3	chr14	56812410	56813410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	921.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	203.08	259.42	142.44	176.1	208.06	163.97	251.37	213.57	144.27
Merged-chr11-69682034-3	chr11	69681535	69682535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	49.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	466.22	319.32	295.99	390.66	338.69	307.85	311.57	364.35	179.86
Merged-chr2-124704399-3	chr2	124703910	124704910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	50829.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	139.01	152.52	144.29	143.04	102.17	131.02	172.16	148.13	110.54
Merged-chr12-102705277-3	chr12	102704791	102705791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	-422.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	90.38	70.96	81.4	80.29	61.58	57.07	91.89	45.99	46.22
Merged-chr19-41829836-3	chr19	41829309	41830309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008043)	promoter-TSS (NM_008043)	-161.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	69.79	47.92	75.85	53.3	34.52	51.44	149.98	85.78	81.19
Merged-chr7-67460032-3	chr7	67459542	67460542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87184.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	179.05	162.66	158.17	170.7	163.74	164.78	133.08	164.93	110.54
Merged-chr10-111103286-3	chr10	111102790	111103790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61512.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	105.26	97.23	63.82	117.4	90.97	73.95	72.88	82.24	43.72
Merged-chr17-7169465-3	chr17	7168994	7169994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-621.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	19.45	30.87	29.6	79.62	76.04	69.93	61.26	69.42	31.23
Merged-chr9-22096208-3	chr9	22095659	22096659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3094.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	68.65	32.25	7.4	62.75	39.19	25.72	53.87	34.05	14.99
Merged-chr10-20059089-3	chr10	20058593	20059593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-89827.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	70.93	108.28	79.55	89.06	88.17	95.65	68.65	86.22	44.97
Merged-chr19-8929497-3	chr19	8929013	8930013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009073)	promoter-TSS (NM_009073)	-157.0	NM_009073	19881.0	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	125.28	82.48	110.07	115.38	88.17	115.75	102.45	79.59	58.71
Merged-chr5-92488357-3	chr5	92487859	92488859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	17298.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	141.3	131.32	95.27	163.96	113.83	127.0	162.65	182.62	88.06
Merged-chr4-108789438-3	chr4	108788952	108789952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-8364.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	30.32	26.26	32.37	35.76	25.66	56.27	14.79	23.88	19.98
Merged-chr7-4900414-1	chr7	4899914	4900914	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14803.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	4.58	0.46	8.32	2.02	0.0	2.41	50.7	57.48	36.22
Merged-chr17-34142666-2	chr17	34142155	34143155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	54.35	37.78	61.05	29.01	22.39	50.64	79.21	91.97	68.7
Merged-chr6-17622121-3	chr6	17621641	17622641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14869.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	43.48	70.96	51.8	42.51	49.45	70.73	64.43	58.81	56.83
Merged-chr2-128745960-3	chr2	128745453	128746453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47038.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	195.07	180.17	135.04	244.25	153.95	157.54	164.76	179.96	142.39
Merged-chr5-24540915-3	chr5	24540403	24541403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310476)	promoter-TSS (NM_001310476)	75.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	12.59	13.82	16.65	15.52	13.06	18.49	12.67	12.38	12.49
Merged-chr12-84802850-3	chr12	84802347	84803347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	29577.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	46.91	25.8	17.57	34.41	19.59	11.25	25.35	19.9	11.24
Merged-chr6-120866240-3	chr6	120865735	120866735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153516, intron 4 of 6)	intron (NM_153516, intron 4 of 6)	30005.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	13.73	8.75	18.5	8.1	8.86	10.45	17.96	11.5	7.49
Merged-chr10-117829893-3	chr10	117829368	117830368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	16106.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	92.67	103.22	77.7	109.98	69.98	84.4	100.34	134.42	63.08
Merged-chr9-98296683-3	chr9	98296186	98297186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357446, exon 1 of 4)	5' UTR (NM_001357446, exon 1 of 4)	116.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	157.31	167.26	112.84	168.0	243.98	167.19	235.53	238.33	99.92
Merged-chr10-96374418-3	chr10	96373901	96374901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	148194.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	311.77	316.1	171.12	278.66	247.72	208.18	215.46	291.83	136.77
Merged-chr2-173337826-3	chr2	173337317	173338317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61284.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	8.01	6.91	23.12	10.12	5.6	9.65	4.22	5.31	8.74
Merged-chr16-11063279-3	chr16	11062774	11063774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3024.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	149.88	102.29	140.59	127.52	74.17	93.24	78.16	98.16	66.82
Merged-chr1-86582681-3	chr1	86582202	86583202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172974)	promoter-TSS (NM_172974)	83.0	NM_001360816	18582.0	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	74.94	74.19	59.2	73.54	54.11	73.14	81.33	82.69	38.1
Merged-chr17-56303246-3	chr17	56302730	56303730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010931)	promoter-TSS (NM_010931)	-107.0	NM_010931	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	28.03	22.12	19.42	38.46	24.26	38.58	48.58	24.76	19.98
Merged-chr6-83867199-3	chr6	83866686	83867686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35445.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	48.62	31.79	27.75	51.95	46.18	39.39	48.58	47.31	23.11
Merged-chr7-44849897-3	chr7	44849358	44850358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253920)	promoter-TSS (NM_001253920)	-149.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	361.54	338.68	315.41	352.88	306.03	317.5	395.01	386.45	217.96
Merged-chr9-107611801-3	chr9	107611290	107612290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2549.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	209.94	187.08	154.47	194.32	142.29	222.65	106.67	118.94	83.69
Merged-chrX-38635197-3	chrX	38634701	38635701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021550)	promoter-TSS (NM_021550)	-58.0	NM_021550	59048.0	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	72.65	94.46	96.2	89.06	90.97	95.65	89.78	76.49	55.58
Merged-chr11-60913797-3	chr11	60913299	60914299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025294)	promoter-TSS (NM_025294)	-7.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	61.78	49.76	44.4	76.92	75.11	87.61	87.66	66.33	46.22
Merged-chr7-80789265-3	chr7	80788763	80789763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	14068.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	65.79	61.75	32.37	87.71	66.71	38.58	58.09	68.98	42.47
Merged-chr7-140999491-3	chr7	140998983	140999983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11261.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	153.88	157.59	114.69	116.73	111.03	119.76	128.85	131.32	106.79
Merged-chr9-35265352-3	chr9	35264854	35265854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286604, intron 2 of 9)	intron (NM_001286604, intron 2 of 9)	2451.0	NM_175411	109229.0	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	24.03	26.26	39.77	18.89	25.66	44.21	15.84	34.05	32.48
Merged-chr5-24039635-3	chr5	24039140	24040140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8950.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	153.31	188.92	74.92	144.39	153.95	125.39	129.91	148.13	73.07
Merged-chr13-42051656-3	chr13	42051144	42052144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	-377.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	282.02	269.1	165.57	316.44	227.19	201.75	237.64	258.67	126.15
Merged-chr17-66519757-3	chr17	66519263	66520263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024448)	promoter-TSS (NM_024448)	-93.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	153.88	104.6	114.69	115.38	63.91	80.38	140.47	73.4	43.72
Merged-chr11-115190548-3	chr11	115190043	115191043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	RMER17C2|LTR|ERVK	3056.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	208.8	205.05	154.47	141.02	109.63	111.73	227.08	264.42	156.76
Merged-chr3-105047049-3	chr3	105046550	105047550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	5903.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	203.08	174.64	122.09	165.31	144.62	116.55	173.21	221.97	99.92
Merged-chr1-106375617-1	chr1	106375117	106376117	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171014.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	31.46	22.12	14.8	56.0	32.19	43.4	33.8	26.53	16.24
Merged-chr4-155943793-3	chr4	155943295	155944295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039157)	promoter-TSS (NM_001039157)	-18.0	NM_001039158	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	214.52	163.58	147.99	227.38	138.09	188.09	321.08	248.5	147.39
Merged-chr10-60398628-3	chr10	60398123	60399123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 28 of 68)	intron (NM_001252635, intron 28 of 68)	-1103.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	20.02	23.04	24.05	35.09	26.12	25.72	19.01	23.43	24.36
Merged-chr2-150851450-3	chr2	150850956	150851956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 2 of 12)	intron (NR_151505, intron 2 of 12)	-8886.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	156.74	113.35	49.95	176.1	124.56	97.26	111.96	133.09	67.45
Merged-chr11-70668911-3	chr11	70668409	70669409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178116)	TTS (NM_178116)	507.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	137.29	101.83	123.02	126.17	78.37	122.18	107.73	146.36	76.82
Merged-chr6-116003705-3	chr6	116003202	116004202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8697.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	127.0	100.91	78.62	85.69	53.18	79.58	101.39	114.08	53.08
Merged-chr18-82863213-3	chr18	82862733	82863733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	7336.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	24.03	23.5	22.2	20.92	12.13	18.49	22.18	11.5	20.61
Merged-chr6-124662932-3	chr6	124662410	124663410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145130)	promoter-TSS (NM_145130)	-194.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	196.21	178.32	114.69	210.51	146.95	127.8	208.07	210.03	87.43
Merged-chr3-96172420-3	chr3	96171922	96172922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153053)	promoter-TSS (NM_153053)	-84.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	231.68	241.45	163.72	203.09	209.0	191.3	204.9	220.2	146.14
Merged-chr1-93125425-3	chr1	93124923	93125923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9817.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	19.45	11.98	12.95	26.31	14.0	14.47	10.56	8.84	8.74
Merged-chr1-59904166-1	chr1	59903666	59904666	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8840.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	10.3	5.99	5.55	15.52	9.33	12.06	8.45	5.31	11.24
Merged-chr9-123863817-3	chr9	123863322	123864322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1793.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	42.33	91.7	73.07	35.09	52.72	74.75	78.16	106.12	78.69
Merged-chr5-125273846-3	chr5	125273326	125274326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	67268.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	18.88	23.5	36.07	21.59	12.6	26.53	23.24	11.5	16.86
Merged-chr14-47000598-3	chr14	47000107	47001107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163433)	promoter-TSS (NM_001163433)	-733.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	158.46	53.45	58.27	160.58	41.99	75.56	194.34	85.34	60.58
Merged-chr3-14534309-3	chr3	14533797	14534797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163580, intron 1 of 18)	intron (NM_001163580, intron 1 of 18)	509.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	24.03	25.34	17.57	29.69	29.39	36.17	27.46	29.18	18.74
Merged-chr1-139422230-3	chr1	139421681	139422681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172643)	promoter-TSS (NM_172643)	-202.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	138.44	129.48	66.6	134.27	124.09	90.02	136.25	97.72	96.8
Merged-chr14-70577709-3	chr14	70577222	70578222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-102.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	384.99	434.52	276.56	392.01	427.79	284.54	336.92	329.41	177.37
Merged-chr18-62224873-3	chr18	62224356	62225356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44756.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	49.2	43.77	42.55	41.16	29.86	25.72	25.35	40.68	32.48
Merged-chr1-72255260-2	chr1	72254757	72255757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11264.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	50.34	40.09	64.75	70.85	46.65	84.4	91.89	61.02	43.72
Merged-chr8-94370957-3	chr8	94370356	94371356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15573.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	118.99	106.44	60.12	87.71	66.24	99.67	105.62	110.1	75.57
Merged-chr5-73557225-3	chr5	73556723	73557723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153313, intron 8 of 9)	intron (NR_153313, intron 8 of 9)	66197.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	78.94	78.33	42.55	93.11	66.24	49.03	58.09	60.13	43.09
Merged-chr11-115654233-3	chr11	115653749	115654749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 3 of 5)	RSINE1|SINE|B4	-25954.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	149.88	137.31	115.62	177.45	156.75	114.14	147.87	157.41	100.55
Merged-chr11-9048531-2	chr11	9048022	9049022	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037928)	promoter-TSS (NM_001037928)	-70.0	NM_001037928	626870.0	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	-	predicted gene 11992	protein-coding	2.29	1.38	1.85	0.0	1.87	1.61	2.11	1.77	2.5
Merged-chr9-123923702-3	chr9	123923212	123924212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	44980.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	572.05	447.88	399.58	510.76	474.44	395.46	562.95	664.14	317.88
Merged-chr7-90048915-3	chr7	90048423	90049423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110364, exon 6 of 6)	non-coding (NR_110364, exon 6 of 6)	19764.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	60.07	58.06	71.22	77.59	55.05	53.85	89.78	84.9	51.21
Merged-chr14-76152698-3	chr14	76152195	76153195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41804.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	200.79	226.71	163.72	165.98	209.93	187.28	192.23	210.47	115.54
Merged-chrX-42171044-3	chrX	42170533	42171533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	20332.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	25.74	43.77	13.87	32.39	30.79	35.37	30.63	49.96	16.24
Merged-chr5-135912016-3	chr5	135911513	135912513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	22628.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	83.52	56.22	36.07	145.74	85.84	128.61	58.09	62.35	28.1
Merged-chr5-114661217-3	chr5	114660708	114661708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-2787.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	108.12	95.84	42.55	113.35	84.44	114.94	90.83	91.97	67.45
Merged-chr4-45487949-3	chr4	45487439	45488439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	42889.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	37.18	23.5	19.42	34.41	19.59	16.08	23.24	26.97	18.74
Merged-chr2-68985480-3	chr2	68984967	68985967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	124026.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	35.47	32.72	43.47	39.81	19.59	45.01	22.18	14.15	28.73
Merged-chr18-13007763-3	chr18	13007262	13008262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	772.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	34.9	34.1	13.87	29.69	38.25	15.27	30.63	34.05	19.98
Merged-chr1-161482385-3	chr1	161481871	161482871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12286.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	10.3	14.75	9.25	22.94	10.26	16.08	9.51	10.61	6.25
Merged-chr3-89773947-1	chr3	89773447	89774447	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130957)	promoter-TSS (NR_130957)	338.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	409.02	303.66	268.24	345.46	218.79	242.74	412.97	333.84	201.72
Merged-chr5-5419452-3	chr5	5418954	5419954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39203.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	221.96	303.2	123.94	207.81	223.46	159.15	213.35	290.5	134.9
Merged-chr4-129500910-3	chr4	129500400	129501400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9710.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	114.98	96.76	87.87	89.06	53.65	99.67	106.67	89.32	99.3
Merged-chr4-86580227-3	chr4	86579715	86580715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4542.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	63.5	45.62	27.75	89.74	51.78	40.19	59.15	77.82	29.98
Merged-chr3-51561287-3	chr3	51560857	51561857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080793)	promoter-TSS (NM_080793)	-534.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	168.76	152.06	111.92	156.53	153.01	82.79	104.56	128.23	72.45
Merged-chr11-115743111-3	chr11	115742613	115743613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22320.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	32.04	21.2	36.07	20.24	21.93	30.54	41.19	26.97	14.99
Merged-chr13-34991696-3	chr13	34991207	34992207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110331, intron 2 of 9)	MER77B|LTR|ERVL	2437.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	36.04	40.55	37.0	43.18	21.93	28.94	33.8	27.86	32.48
Merged-chr4-135963631-3	chr4	135963125	135964125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356493)	promoter-TSS (NM_001356493)	-100.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	74.37	45.16	77.7	74.89	77.44	81.99	89.78	80.47	44.34
Merged-chr1-91456333-4	chr1	91455846	91456846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	2982.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	167.61	189.38	87.87	198.37	174.47	122.98	196.45	226.83	98.68
Merged-chr16-33185055-3	chr16	33184547	33185547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176840)	promoter-TSS (NM_176840)	-24.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	272.3	249.28	266.39	224.01	201.53	172.01	200.68	183.94	158.01
Merged-chr11-85235048-3	chr11	85234526	85235526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025825)	promoter-TSS (NM_025825)	94.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	294.61	275.09	220.14	301.6	285.97	302.22	266.16	222.41	143.02
Merged-chr14-75186447-3	chr14	75185934	75186934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50009.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	118.42	95.38	61.05	95.14	56.91	100.47	106.67	88.88	74.94
Merged-chr1-86442608-3	chr1	86442098	86443098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	16269.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	184.77	112.89	67.52	185.55	159.55	87.61	118.29	84.01	58.71
Merged-chr3-94443348-3	chr3	94442849	94443849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030116)	promoter-TSS (NM_030116)	13.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	62.35	64.51	42.55	72.19	68.11	67.52	98.23	79.59	59.95
Merged-chr1-165134015-3	chr1	165133520	165134520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	26753.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	4.0	8.75	1.85	7.42	4.67	4.82	5.28	4.42	8.12
Merged-chr13-3539064-2	chr13	3538574	3539574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	999.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	95.53	124.41	65.67	86.36	92.37	130.21	126.74	98.6	108.04
Merged-chr10-91242759-3	chr10	91242249	91243249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22130.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	23.45	18.89	19.42	29.69	9.8	29.74	24.29	33.16	16.24
Merged-chr4-119912417-3	chr4	119911910	119912910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	97732.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	16.02	10.6	7.4	18.89	6.53	1.61	17.96	8.4	5.0
Merged-chr17-30004839-3	chr17	30004352	30005352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-187.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	410.73	280.16	382.01	385.94	212.26	210.59	397.13	257.78	174.24
Merged-chr14-19823924-3	chr14	19823442	19824442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026528)	promoter-TSS (NM_026528)	-119.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	212.23	266.79	173.89	170.03	199.67	157.54	256.65	234.79	129.9
Merged-chr8-68793911-3	chr8	68793407	68794407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293792)	promoter-TSS (NM_001293792)	-22.0	NM_001359129	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	33.18	22.12	12.95	34.41	28.92	32.15	36.97	46.43	28.1
Merged-chr7-113513725-3	chr7	113513229	113514229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027379)	promoter-TSS (NM_027379)	-105.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	121.85	101.37	107.29	108.63	83.04	94.04	115.12	68.09	62.45
Merged-chr15-80074974-3	chr15	80074504	80075504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3575.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	146.45	140.54	87.87	214.56	148.35	143.88	123.57	118.5	77.44
Merged-chr1-176826322-3	chr1	176825807	176826807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	67.5	89.39	38.85	100.53	85.37	84.4	122.52	126.9	69.95
Merged-chr16-25059171-3	chr16	25058666	25059666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	193.35	195.37	134.12	273.94	265.44	265.25	218.63	239.65	125.53
Merged-chr1-136685499-3	chr1	136685006	136686006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	1877.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	255.71	211.04	147.07	253.69	146.48	139.06	277.78	251.15	141.14
Merged-chr2-71211742-3	chr2	71211265	71212265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198878)	promoter-TSS (NM_001198878)	59.0	NM_001198876	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	33.75	38.25	31.45	37.78	52.72	53.85	41.19	26.09	29.35
Merged-chr10-6715835-3	chr10	6715347	6716347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42746.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	37.18	39.63	20.35	41.83	19.59	20.09	40.14	24.76	17.49
Merged-chr10-94474386-3	chr10	94473880	94474880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-40477.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	221.96	185.7	86.95	248.97	191.73	175.23	146.81	192.34	120.53
Merged-chr3-131303191-3	chr3	131302695	131303695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027816)	promoter-TSS (NM_027816)	32.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	4.58	5.07	3.7	8.77	2.33	3.22	4.22	6.19	3.75
Merged-chr7-16052934-3	chr7	16052437	16053437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18908.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	109.26	108.75	72.15	82.99	78.84	99.67	98.23	134.42	67.45
Merged-chr5-92353786-3	chr5	92353337	92354337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-4948.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	221.96	196.75	110.07	203.76	150.22	114.14	209.12	228.16	124.28
Merged-chr10-118098156-3	chr10	118097647	118098647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43640.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	225.39	194.45	127.64	256.39	167.01	225.06	235.53	247.61	158.63
Merged-chr8-108971524-1	chr8	108971024	108972024	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	34664.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	10.3	10.6	9.25	13.49	4.67	8.04	13.73	13.71	9.37
Merged-chr11-85697685-3	chr11	85697197	85698197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	22047.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	44.05	36.4	19.42	57.35	48.05	32.96	34.85	28.3	19.98
Merged-chr10-121446035-3	chr10	121445525	121446525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	30225.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	23.45	23.04	18.5	24.29	14.46	24.11	20.07	26.97	16.24
Merged-chr9-121574599-3	chr9	121574088	121575088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12432.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	20.59	12.9	9.25	10.12	20.99	36.97	16.9	17.69	19.98
Merged-chr15-38289156-3	chr15	38288656	38289656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	10744.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	95.53	101.37	69.37	87.04	61.58	95.65	100.34	113.64	79.32
Merged-chr5-5115271-1	chr5	5114771	5115771	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 6 of 14)	intron (NM_011074, intron 6 of 14)	150797.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.0	2.76	0.0	1.35	0.93	0.0	12.67	1.77	14.99
Merged-chr3-88648303-3	chr3	88647793	88648793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198911)	TTS (NM_001198911)	4849.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	48.62	54.37	44.4	43.86	35.45	42.6	33.8	37.14	23.73
Merged-chr11-95414913-3	chr11	95414353	95415353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	770.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	524.57	363.1	259.91	354.9	228.12	278.11	295.73	402.81	197.98
Merged-chr5-99234634-3	chr5	99234124	99235124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145839, exon 5 of 14)	exon (NM_145839, exon 5 of 14)	18303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	88.1	88.93	74.92	87.71	73.71	86.81	90.83	83.57	53.71
Merged-chr6-42349853-3	chr6	42349364	42350364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011777)	promoter-TSS (NM_011777)	36.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	302.62	189.84	215.51	280.01	191.27	230.69	254.54	254.25	177.99
Merged-chr13-9409216-3	chr13	9408700	9409700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	132675.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	72.65	88.47	52.72	64.1	55.51	64.3	27.46	52.62	47.46
Merged-chr8-22641926-3	chr8	22641439	22642439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011130, intron 7 of 13)	intron (NM_011130, intron 7 of 13)	-5130.0	NR_027886	68074.0	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	21.74	26.26	16.65	36.43	30.79	36.97	24.29	22.55	29.98
Merged-chr16-31290449-3	chr16	31289958	31290958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-15181.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	136.15	115.66	71.22	132.92	200.6	140.66	148.92	179.52	88.68
Merged-chr10-78356168-3	chr10	78355669	78356669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4469.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	29.75	5.53	18.5	16.87	3.27	10.45	10.56	9.29	1.87
Merged-chr4-41368429-3	chr4	41367970	41368970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 2 of 6)	intron (NM_001355508, intron 2 of 6)	16507.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	50.34	40.09	25.9	66.12	31.26	34.56	50.7	42.45	21.23
Merged-chr9-66375029-3	chr9	66374550	66375550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 2 of 77)	intron (NM_145617, intron 2 of 77)	24600.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	51.48	38.71	45.32	53.3	27.52	37.78	55.98	48.2	32.48
Merged-chr3-133091824-3	chr3	133091316	133092316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	9.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	394.72	398.12	375.53	369.75	367.61	348.84	380.23	375.84	209.22
Merged-chr11-79611098-3	chr11	79610544	79611544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12119.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	81.23	66.35	38.85	93.11	65.78	63.5	43.3	43.33	31.23
Merged-chr6-97464358-3	chr6	97463831	97464831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-5045.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	303.19	253.89	174.82	296.2	221.59	230.69	257.71	328.97	141.14
Merged-chr1-39590391-3	chr1	39589891	39590891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13044.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	40.04	36.86	41.62	49.25	32.66	47.42	59.15	39.8	36.85
Merged-chr7-47035160-3	chr7	47034665	47035665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15475.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	130.43	125.33	86.95	136.97	130.16	82.79	157.37	181.73	76.82
Merged-chr1-171658685-3	chr1	171658186	171659186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5649.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	24.6	16.13	25.9	41.16	36.39	29.74	32.74	22.99	8.74
Merged-chr1-54914651-3	chr1	54914150	54915150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	11737.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	168.76	202.28	84.17	155.19	118.03	98.87	133.08	152.11	85.56
Merged-chrM-14739-2	chrM	14241	15241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											294.04	260.8	29.6	188.92	39.65	40.19	121.46	41.12	25.61
Merged-chr7-27486906-3	chr7	27486428	27487428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018820)	promoter-TSS (NM_018820)	-25.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	211.09	180.17	152.62	224.01	114.76	154.33	193.28	154.32	106.17
Merged-chr1-131943008-3	chr1	131942476	131943476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19939.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	60.64	79.72	61.05	73.54	74.64	60.28	62.31	70.75	44.97
Merged-chr10-127662270-3	chr10	127661773	127662773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122895, intron 5 of 5)	intron (NM_001122895, intron 5 of 5)	4430.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	54.92	37.78	46.25	41.16	30.32	48.23	68.65	49.52	41.22
Merged-chr13-48545978-3	chr13	48545485	48546485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7713.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	364.97	339.14	357.96	339.38	270.11	262.04	343.26	260.44	186.11
Merged-chrX-48234679-3	chrX	48234164	48235164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22270.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	16.02	32.25	8.32	34.41	14.93	47.42	22.18	29.63	25.61
Merged-chr15-64085983-3	chr15	64085485	64086485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276462)	TTS (NM_001276462)	-25537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	121.28	120.73	123.94	132.24	95.63	126.19	95.06	98.6	84.31
Merged-chr3-90051928-3	chr3	90051418	90052418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027500)	promoter-TSS (NM_027500)	282.0	NM_001287087	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	288.32	272.78	251.59	311.72	278.04	199.34	354.88	351.52	205.47
Merged-chr18-9708148-1	chr18	9707648	9708648	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	CpG	500.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	37.76	34.56	33.3	124.15	193.13	98.06	22.18	18.13	8.12
Merged-chr13-47233304-3	chr13	47232817	47233817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	39314.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	53.77	78.79	56.42	66.8	56.45	65.91	68.65	75.17	74.94
Merged-chr5-30638328-3	chr5	30637852	30638852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-9584.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	10.87	7.83	16.65	12.82	4.2	8.04	9.51	7.07	6.25
Merged-chr1-172525306-3	chr1	172524804	172525804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	4174.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	22.31	14.75	16.65	37.11	21.93	12.86	42.25	36.26	23.73
Merged-chr5-104571624-3	chr5	104571104	104572104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346671)	promoter-TSS (NM_001346671)	-68.0	NM_001346672	69623.0	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	56.63	59.44	59.2	54.65	71.38	72.34	160.54	164.93	69.32
Merged-chr4-32239453-3	chr4	32238928	32239928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178007.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	121.85	91.24	71.22	105.93	89.1	120.57	71.82	32.28	31.23
Merged-chr3-146108184-3	chr3	146107700	146108700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172864)	promoter-TSS (NM_172864)	-164.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	43.48	34.1	19.42	42.51	32.19	29.74	19.01	30.95	15.61
Merged-chr5-33358688-3	chr5	33358190	33359190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 2 of 8)	intron (NM_021500, intron 2 of 8)	-20006.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	29.75	32.72	45.32	30.36	20.06	49.83	39.08	34.05	18.74
Merged-chr11-60935488-3	chr11	60934978	60935978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	3421.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	221.38	221.64	182.22	246.95	216.46	171.21	163.71	190.57	121.16
Merged-chr2-167656865-3	chr2	167656400	167657400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	4644.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	463.36	323.47	249.74	492.54	319.56	271.68	324.25	370.98	208.59
Merged-chr3-54709172-3	chr3	54708665	54709665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019995, exon 11 of 20)	exon (NM_019995, exon 11 of 20)	14042.0	NM_001358015	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	98.97	73.26	49.95	78.27	60.65	72.34	53.87	64.56	54.33
Merged-chr11-101173984-3	chr11	101173498	101174498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007721, exon 2 of 2)	exon (NM_007721, exon 2 of 2)	1445.0	NM_007721	12777.0	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	C-C CKR-10|CC-CKR-10|CCR-10|Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	56.06	49.3	48.1	53.98	46.65	69.93	62.31	53.5	46.84
Merged-chr1-191085739-3	chr1	191085214	191086214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12700.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	305.48	268.64	229.39	275.96	212.73	225.86	251.37	256.9	138.02
Merged-chr11-23762848-3	chr11	23762372	23763372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	8098.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	38.9	38.71	12.95	60.72	32.66	30.54	40.14	35.82	20.61
Merged-chr10-86772508-3	chr10	86772017	86773017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003910, intron 14 of 15)	intron (NM_001003910, intron 14 of 15)	-6488.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	39.47	31.33	24.97	35.76	37.79	36.97	25.35	21.67	18.11
Merged-chrX-77509344-3	chrX	77508845	77509845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1882.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	28.6	29.95	26.82	26.99	21.46	20.9	30.63	35.37	18.74
Merged-chr2-92483761-3	chr2	92483262	92484262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-23244.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	16.02	19.35	37.0	80.29	79.31	110.12	98.23	110.54	98.05
Merged-chr11-75573343-3	chr11	75572841	75573841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173388, exon 14 of 14)	3' UTR (NM_173388, exon 14 of 14)	-14738.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	62.35	34.56	44.4	72.87	30.32	53.05	77.1	61.46	32.48
Merged-chr5-76048317-3	chr5	76047807	76048807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69879.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	16.59	9.68	9.25	10.12	6.06	13.66	8.45	7.52	5.0
Merged-chr2-27475711-3	chr2	27475223	27476223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-50.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	49.2	31.79	67.52	43.18	34.99	82.79	48.58	39.35	51.21
Merged-chr2-43738673-3	chr2	43738175	43739175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10149.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	144.73	149.75	97.12	118.08	116.16	113.33	121.46	164.93	81.19
Merged-chr13-98896900-3	chr13	98896403	98897403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	-5861.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	29.75	27.65	18.5	31.04	26.59	16.08	26.4	17.69	13.74
Merged-chr19-46648121-3	chr19	46647635	46648635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24734.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	131.57	99.53	63.82	132.24	114.76	112.53	103.51	76.49	36.22
Merged-chr10-60257614-3	chr10	60257090	60258090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-20038.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	188.78	111.97	80.47	200.39	104.03	96.45	198.56	178.64	102.42
Merged-chr17-44777137-3	chr17	44776639	44777639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357320)	promoter-TSS (NM_001357320)	-27.0	NM_001357320	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	171.04	112.89	135.97	172.05	107.3	131.02	184.83	120.27	94.93
Merged-chr15-86273516-3	chr15	86273016	86274016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-4159.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	156.17	168.19	143.37	190.95	191.73	124.59	144.7	141.49	94.3
Merged-chr7-139402943-3	chr7	139402448	139403448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	L1MB5|LINE|L1	2454.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	11.44	21.2	11.1	16.19	4.67	12.86	16.9	9.29	9.99
Merged-chr10-79996452-3	chr10	79995953	79996953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1155.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	26.89	26.26	29.6	30.36	14.0	25.72	36.97	43.77	16.86
Merged-chr17-23803503-2	chr17	23802990	23803990	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175229, intron 1 of 13)	CpG	303.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	451.35	398.58	315.41	362.32	318.16	249.98	322.14	295.81	229.83
Merged-chr8-27261252-3	chr8	27260745	27261745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	918.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	48.62	60.82	80.47	58.03	62.05	52.25	101.39	93.3	55.58
Merged-chr7-132323612-3	chr7	132323100	132324100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6372.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	19.45	10.6	9.25	18.89	8.4	5.63	16.9	7.07	5.0
Merged-chr4-109199613-3	chr4	109199110	109200110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346502, intron 1 of 23)	intron (NM_001346502, intron 1 of 23)	2662.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	32.61	41.01	37.92	33.74	36.85	28.13	32.74	27.41	25.61
Merged-chr2-145824963-3	chr2	145824472	145825472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	38856.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	220.24	212.42	141.52	244.92	213.19	247.57	235.53	289.18	126.15
Merged-chr15-84995713-2	chr15	84995184	84996184	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7713.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	102.97	70.5	101.74	123.47	74.17	84.4	164.76	103.02	74.32
Merged-chr8-33599562-3	chr8	33599046	33600046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017374)	promoter-TSS (NM_017374)	-75.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	57.78	34.1	90.65	56.0	25.66	57.07	60.2	34.49	37.47
Merged-chr2-174018179-3	chr2	174017679	174018679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58872.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	46.34	34.1	19.42	26.31	16.33	20.9	34.85	38.91	21.86
Merged-chr1-130462582-3	chr1	130462044	130463044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010016, intron 1 of 9)	intron (NM_010016, intron 1 of 9)	200.0	NM_010016	13136.0	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	33.18	34.56	24.05	26.99	25.19	8.04	60.2	40.24	27.48
Merged-chr3-121330379-3	chr3	121329872	121330872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38632.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	20.59	16.13	12.95	18.22	15.86	12.86	24.29	23.88	13.74
Merged-chr11-121745716-3	chr11	121745192	121746192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43265.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	185.92	193.53	128.57	211.19	181.01	158.35	237.64	265.3	165.5
Merged-chr11-46461593-3	chr11	46461075	46462075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 3 of 6)	ID_B1|SINE|B4	6644.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	25.17	26.26	21.27	79.62	71.38	57.87	54.92	34.93	45.59
Merged-chr9-121314997-3	chr9	121314497	121315497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	17495.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	294.61	304.12	137.82	285.41	303.23	192.11	274.61	342.24	160.5
Merged-chr7-114562810-6	chr7	114562310	114563310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177382, exon 1 of 5)	exon (NM_177382, exon 1 of 5)	162.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	62.93	76.49	74.92	74.22	69.04	83.59	82.38	72.52	61.2
Merged-chr17-53479195-3	chr17	53478708	53479708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-26.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	384.99	338.22	332.98	306.32	301.83	215.42	339.04	303.77	199.22
Merged-chr16-96081529-3	chr16	96081026	96082026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145125, intron 4 of 41)	intron (NM_145125, intron 4 of 41)	902.0	NM_001103179	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	129.86	75.57	102.67	122.8	88.64	78.77	91.89	72.96	58.71
Merged-chr2-94178936-3	chr2	94178435	94179435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21026.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	50.91	82.94	50.87	71.52	87.24	75.56	82.38	84.45	39.35
Merged-chr4-141546619-3	chr4	141546131	141547131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	469.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	622.39	573.22	428.25	645.03	480.5	404.31	496.41	542.98	308.52
Merged-chr5-34538087-3	chr5	34537578	34538578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-5287.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	39.47	47.46	42.55	57.35	25.66	61.09	54.92	45.54	54.33
Merged-chr13-81400872-2	chr13	81400370	81401370	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	intron (NM_054053, intron 77 of 89)	232274.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	12.59	12.9	17.57	22.27	17.73	14.47	21.12	12.82	14.99
Merged-chr19-41332419-3	chr19	41331929	41332929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	52641.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	238.55	199.52	137.82	237.5	197.33	163.17	272.5	269.28	171.12
Merged-chr15-86202855-3	chr15	86202337	86203337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11622.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	227.11	182.01	189.62	213.89	167.48	197.73	216.52	204.28	143.64
Merged-chr3-19630299-3	chr3	19629833	19630833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14127.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	24.03	22.58	27.75	29.69	18.19	41.8	33.8	26.53	18.74
Merged-chr3-87334172-3	chr3	87333641	87334641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23740.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	224.82	181.09	148.92	276.63	144.15	172.01	194.34	226.83	151.76
Merged-chr6-38712356-3	chr6	38711856	38712856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	MIRc|SINE|MIR	49287.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	154.45	118.42	85.1	157.21	83.51	54.66	117.24	160.95	91.81
Merged-chr7-130519616-3	chr7	130519097	130520097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136054)	promoter-TSS (NM_001136054)	-17.0	NM_013799	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	295.18	310.57	224.76	213.21	277.57	237.92	259.82	261.76	161.13
Merged-chr11-3170706-2	chr11	3170214	3171214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	intron (NM_030207, intron 6 of 32)	22749.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	73.22	88.47	77.7	69.5	84.9	103.69	1.06	1.77	150.51
Merged-chr9-111063040-3	chr9	111062544	111063544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5526.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	194.5	101.83	49.95	192.97	118.49	106.1	28.52	11.94	16.86
Merged-chr5-140108083-3	chr5	140107574	140108574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	66844.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	92.67	120.73	103.59	114.7	105.43	92.44	101.39	123.81	69.32
Merged-chr11-94994102-1	chr11	94993602	94994602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2890.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	144.16	169.11	75.85	35.76	44.32	57.87	36.97	56.16	27.48
Merged-chr17-24220816-3	chr17	24220322	24221322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028056)	promoter-TSS (NM_028056)	29.0	NM_028056	72016.0	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	61.78	59.9	30.52	70.17	72.78	59.48	51.75	68.09	25.61
Merged-chr10-128298422-3	chr10	128297914	128298914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-330.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	206.51	198.6	117.47	180.82	156.75	139.06	199.62	224.62	118.04
Merged-chr9-116183190-3	chr9	116182695	116183695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5985.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	101.83	111.05	86.95	134.27	70.44	92.44	62.31	57.92	44.34
Merged-chr19-47228869-3	chr19	47228397	47229397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163480)	promoter-TSS (NM_001163480)	54.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	36.04	23.5	38.85	33.74	20.53	28.13	41.19	49.52	32.48
Merged-chr12-110446475-3	chr12	110445929	110446929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-750.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	168.76	203.67	207.19	157.88	167.01	174.42	184.83	217.55	121.78
Merged-chr15-13212155-1	chr15	13211655	13212655	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38480.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	6.86	3.69	1.85	2.02	0.47	0.0	2.11	4.86	6.25
Merged-chr4-122892358-3	chr4	122891830	122892830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6254.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	81.23	107.82	87.87	78.27	69.04	99.67	73.93	103.02	107.42
Merged-chr13-95679365-2	chr13	95678871	95679871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-17549.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	40.62	73.26	37.92	60.05	28.92	41.8	4.22	3.54	5.0
Merged-chr12-3426786-3	chr12	3426288	3427288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	-41.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	314.06	391.67	294.14	273.26	393.73	307.85	336.92	368.77	250.44
Merged-chr5-53385699-3	chr5	53385227	53386227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118621.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	18.31	23.96	14.8	22.94	16.79	8.04	17.96	21.67	28.1
Merged-chr15-79348293-3	chr15	79347790	79348790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304832)	promoter-TSS (NM_001304832)	-112.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	190.49	87.09	53.65	154.51	48.05	29.74	119.35	64.11	42.47
Merged-chr19-59345310-3	chr19	59344829	59345829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033222, exon 1 of 5)	exon (NM_001033222, exon 1 of 5)	451.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	173.9	159.89	147.99	114.03	101.7	145.49	127.8	80.47	85.56
Merged-chr11-34034095-3	chr11	34033591	34034591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MTE2a|LTR|ERVL-MaLR	-12837.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	240.26	201.82	135.97	222.66	165.14	160.76	179.55	218.87	120.53
Merged-chr13-9093761-3	chr13	9093268	9094268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311117)	promoter-TSS (NM_001311117)	-113.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	276.3	182.01	211.81	248.3	164.68	144.68	200.68	136.63	141.77
Merged-chr5-99250989-3	chr5	99250492	99251492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1935.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	414.17	412.4	249.74	382.56	445.05	331.16	377.06	483.29	227.33
Merged-chr18-75494984-3	chr18	75494476	75495476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-19669.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	32.61	30.41	42.55	33.74	25.19	40.19	38.02	31.84	53.08
Merged-chr10-69213143-3	chr10	69212645	69213645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	-47.0	NM_001331193	320700.0	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	258.0	254.81	262.69	266.51	232.79	185.68	250.32	246.29	164.88
Merged-chr1-138244118-3	chr1	138243620	138244620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29618.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	49.77	42.39	31.45	51.28	21.93	45.01	55.98	38.91	45.59
Merged-chr12-65036410-3	chr12	65035948	65036948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177806, exon 1 of 14)	5' UTR (NM_177806, exon 1 of 14)	114.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	250.56	261.73	204.41	242.22	225.32	213.0	260.88	169.79	134.9
Merged-chr4-43964705-3	chr4	43964213	43965213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7011.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	60.64	70.5	67.52	68.15	22.86	29.74	60.2	49.08	65.58
Merged-chr11-118146564-3	chr11	118146068	118147068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-17349.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	248.27	212.88	118.39	497.94	390.93	331.96	277.78	347.54	168.0
Merged-chr15-100552033-3	chr15	100551510	100552510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033476)	promoter-TSS (NM_033476)	-2.0	NM_001289603	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	88.67	73.73	91.57	92.44	63.91	73.14	95.06	66.77	56.21
Merged-chr2-45197545-3	chr2	45197026	45198026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80084.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	399.87	444.2	221.99	348.83	371.81	286.15	383.4	510.26	232.32
Merged-chr14-118663169-3	chr14	118662661	118663661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	13770.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	42.9	38.25	37.0	35.09	16.33	23.31	49.64	38.47	31.85
Merged-chr11-60878891-3	chr11	60878399	60879399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168507, exon 1 of 3)	5' UTR (NM_001168507, exon 1 of 3)	139.0	NM_173453	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	357.53	312.41	250.66	331.96	403.53	328.75	378.11	454.11	174.87
Merged-chr10-99261819-5	chr10	99261276	99262276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1455.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	322.07	303.2	250.66	295.53	349.88	286.15	347.48	409.45	192.35
Merged-chr10-77662932-3	chr10	77662422	77663422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	21698.0	NR_035451	100316811.0		NR_035451	ENSMUSG00000089424	Mir1930	mir-1930|mmu-mir-1930	microRNA 1930	ncRNA	23.45	13.36	16.65	24.96	17.73	26.53	46.47	24.32	6.25
Merged-chr11-68901487-3	chr11	68900965	68901965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003373)	promoter-TSS (NR_003373)	-101.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	97.82	88.01	48.1	106.61	87.7	57.07	74.99	93.3	29.98
Merged-chr1-134093165-3	chr1	134092686	134093686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14031.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	340.37	311.95	230.31	363.0	297.17	280.52	288.34	370.98	156.13
Merged-chr17-88552191-3	chr17	88551727	88552727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	22103.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	132.72	149.75	100.82	130.22	112.9	134.23	158.43	158.3	79.94
Merged-chr13-24104189-3	chr13	24103691	24104691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112977.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	37.76	28.11	21.27	47.9	25.19	34.56	36.97	32.72	17.49
Merged-chr11-101552747-3	chr11	101552245	101553245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	91.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	339.8	358.49	214.59	375.14	336.82	188.09	349.6	402.81	171.12
Merged-chr3-84748307-1	chr3	84747807	84748807	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67270.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.72	1.38	1.85	8.77	17.73	9.65	4.22	1.33	5.62
Merged-chr1-37013187-3	chr1	37012656	37013656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73629.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	35.47	19.35	11.1	21.59	16.79	12.86	10.56	11.5	14.36
Merged-chr4-132329513-3	chr4	132329022	132330022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027925)	promoter-TSS (NM_027925)	16.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	121.28	88.01	114.69	116.05	67.64	90.83	129.91	153.43	80.56
Merged-chr10-81601040-3	chr10	81600556	81601556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346695)	promoter-TSS (NM_001346695)	-156.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	9.72	6.45	19.42	10.8	9.8	16.88	13.73	10.61	15.61
Merged-chr5-115011048-3	chr5	115010555	115011555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029012)	promoter-TSS (NM_029012)	-469.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	96.11	76.49	94.35	112.0	66.71	80.38	108.79	58.37	50.59
Merged-chr2-174330820-3	chr2	174330277	174331277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201616, intron 1 of 11)	CpG-8943	688.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	344.95	338.22	299.68	323.86	263.11	241.94	386.56	305.54	216.09
Merged-chr5-123058027-3	chr5	123057524	123058524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11008.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	110.98	103.22	74.92	111.33	115.69	94.04	105.62	137.96	61.83
Merged-chr19-11766616-3	chr19	11766108	11767108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3807.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	68.65	66.35	66.6	58.7	51.78	66.71	57.03	44.22	54.33
Merged-chr5-96912974-3	chr5	96912472	96913472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8300.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	199.07	168.19	151.69	206.46	180.07	135.84	117.24	107.89	119.28
Merged-chr3-89843335-3	chr3	89842839	89843839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	11969.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	22.31	19.81	15.72	24.96	11.66	26.53	27.46	17.24	22.48
Merged-chr17-27827157-3	chr17	27826649	27827649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6607.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	145.87	102.75	96.2	172.73	120.36	106.1	121.46	123.36	77.44
Merged-chr2-167713303-4	chr2	167712802	167713802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22125.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	46.91	32.72	36.07	58.03	41.99	45.01	59.15	62.35	41.84
Merged-chr9-106308762-3	chr9	106308246	106309246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27685.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	94.39	95.84	87.87	95.81	74.17	132.63	85.55	98.6	94.93
Merged-chr9-121352413-3	chr9	121351916	121352916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-14542.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	35.47	18.43	16.65	38.46	15.86	24.11	23.24	26.97	11.24
Merged-chr4-47303538-3	chr4	47303039	47304039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 33 of 39)	intron (NM_009928, intron 33 of 39)	-49683.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	93.24	94.0	79.55	94.46	96.57	98.06	80.27	106.56	74.32
Merged-chr1-64338760-3	chr1	64338262	64339262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-194042.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	50.34	49.3	21.27	45.88	58.78	39.39	19.01	29.18	6.25
Merged-chr14-62842704-3	chr14	62842208	62843208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	4987.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	169.9	129.02	97.12	138.99	72.78	80.38	104.56	117.17	95.55
Merged-chr13-113908485-1	chr13	113907985	113908985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	113977.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	16.02	10.6	1.85	3.37	1.87	1.61	2.11	4.42	5.0
Merged-chr10-20835407-3	chr10	20834909	20835909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-110331.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	217.95	212.42	101.74	201.07	178.21	99.67	172.16	217.55	85.56
Merged-chr12-85219390-3	chr12	85218884	85219884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145445)	promoter-TSS (NM_145445)	-97.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	73.22	74.19	64.75	66.8	51.78	55.46	80.27	59.69	39.35
Merged-chr3-84039450-3	chr3	84038949	84039949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 1 of 34)	CpG	712.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	113.27	120.73	99.89	84.34	104.96	96.45	109.84	82.69	51.84
Merged-chr6-83506963-3	chr6	83506447	83507447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162521)	promoter-TSS (NM_001162521)	22.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	284.31	187.08	218.29	234.13	163.74	204.97	192.23	189.69	128.03
Merged-chr8-46792860-3	chr8	46792351	46793351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	53106.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	111.55	114.74	92.5	134.94	62.98	102.88	86.61	114.08	66.2
Merged-chr1-151620833-3	chr1	151620324	151621324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	49451.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	85.81	60.82	72.15	92.44	48.98	77.97	60.2	62.35	39.97
Merged-chr7-73533617-3	chr7	73533110	73534110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8136.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	175.62	162.66	114.69	221.31	194.53	174.42	189.06	179.96	122.41
Merged-chr17-88131475-3	chr17	88130972	88131972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190356)	TTS (NM_001190356)	5960.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	50.91	36.86	2.77	93.11	68.58	49.03	32.74	34.93	24.98
Merged-chr5-8056509-3	chr5	8056014	8057014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-28.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	93.82	84.78	79.55	108.63	74.64	124.59	137.3	91.97	59.95
Merged-chr13-56353436-3	chr13	56352938	56353938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9462.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	110.41	105.52	91.57	122.8	87.7	118.16	118.29	99.49	53.08
Merged-chr4-6373121-3	chr4	6372636	6373636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	7456.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	209.94	212.42	145.22	222.66	246.32	155.93	227.08	320.57	81.81
Merged-chr18-38339027-3	chr18	38338540	38339540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-47.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	209.94	272.78	155.39	306.32	415.66	243.55	309.46	339.58	137.4
Merged-chr7-5015510-5	chr7	5014989	5015989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-19.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	208.8	155.28	189.62	173.4	130.62	188.89	210.18	179.52	146.14
Merged-chr7-27195810-3	chr7	27195307	27196307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243888)	promoter-TSS (NM_001243888)	26.0	NM_001243888	414069.0	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	192.78	201.36	163.72	184.2	191.73	164.78	194.34	205.61	88.06
Merged-chr2-28540123-3	chr2	28539614	28540614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	6650.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	168.76	117.5	71.22	139.67	79.31	45.82	80.27	85.34	38.1
Merged-chr7-126482669-3	chr7	126482194	126483194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4661.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	37.76	55.75	50.87	49.93	41.52	50.64	52.81	59.69	43.72
Merged-chr10-20919809-3	chr10	20919309	20920309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-32738.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	34.9	18.89	17.57	34.41	22.86	30.54	28.52	13.27	9.99
Merged-chr7-19421452-3	chr7	19420950	19421950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073014)	promoter-TSS (NR_073014)	-33.0	NR_073015	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	2.29	2.76	2.77	4.05	0.47	0.0	6.34	4.86	1.25
Merged-chr2-32966896-3	chr2	32966384	32967384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	3583.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	675.02	633.58	380.16	645.03	777.2	411.54	513.31	699.51	285.41
Merged-chr4-52439064-3	chr4	52438568	52439568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301412)	promoter-TSS (NM_001301412)	-104.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	142.44	118.88	55.5	128.87	91.44	62.7	146.81	124.25	68.07
Merged-chr7-101362904-3	chr7	101362414	101363414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14845.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	451.92	428.07	327.43	498.62	433.39	290.97	385.51	523.53	214.84
Merged-chr7-127512427-3	chr7	127511908	127512908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024331, exon 1 of 1)	non-coding (NR_024331, exon 1 of 1)	425.0	NM_001304266	100043597.0	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	358.68	272.78	223.84	390.66	267.31	288.56	369.66	371.86	229.83
Merged-chr3-16180659-3	chr3	16180180	16181180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-2485.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	69.22	80.18	79.55	84.34	105.43	72.34	45.42	60.58	54.96
Merged-chr7-26243277-3	chr7	26242768	26243768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-23563.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	7.44	12.9	8.32	15.52	19.13	18.49	12.67	4.42	9.99
Merged-chr19-42518771-3	chr19	42518276	42519276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-29.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	311.2	334.53	186.84	224.68	312.56	241.94	264.05	268.4	181.74
Merged-chr8-114133875-1	chr8	114133375	114134375	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290181, exon 1 of 4)	5' UTR (NM_001290181, exon 1 of 4)	301.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	14.87	1.84	4.62	12.14	1.87	13.66	5.28	2.21	8.12
Merged-chr6-82766713-3	chr6	82766214	82767214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	7740.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	47.48	30.41	57.35	41.83	33.59	69.93	44.36	63.67	80.56
Merged-chr8-25070192-3	chr8	25069692	25070692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-31230.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	45.76	41.93	58.27	49.93	26.59	53.85	30.63	44.66	23.11
Merged-chr7-35156656-3	chr7	35156182	35157182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29703.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	12.01	8.75	20.35	18.89	11.66	19.29	12.67	8.4	15.61
Merged-chr4-122840360-1	chr4	122839860	122840860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008917, intron 1 of 8)	L1MB5|LINE|L1	4133.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	22.31	23.5	17.57	36.43	25.19	20.09	26.4	13.71	19.98
Merged-chr18-31609834-4	chr18	31609254	31610254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	176.0	NM_026165	67453.0	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	128.14	133.63	123.02	112.68	98.9	135.84	135.19	82.69	69.95
Merged-chr19-43667265-3	chr19	43666770	43667770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	7611.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	18.31	17.51	14.8	18.22	14.46	22.51	13.73	11.94	18.74
Merged-chr2-51376831-3	chr2	51376339	51377339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61061.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	18.88	16.13	10.17	50.6	63.45	50.64	25.35	21.22	19.36
Merged-chrUn_GL456389-10666-1	chrUn_GL456389	10166	11166	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	106.67	72.07	0.0
Merged-chr12-4234119-3	chr12	4233600	4234600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204912)	promoter-TSS (NM_001204912)	73.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	346.09	409.18	310.78	352.2	381.14	311.87	367.55	369.21	197.98
Merged-chr13-52624290-3	chr13	52623794	52624794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 6 of 13)	intron (NM_011518, intron 6 of 13)	27412.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	20.59	23.04	22.2	14.17	12.6	45.01	16.9	17.24	18.11
Merged-chr15-99030758-3	chr15	99030244	99031244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	853.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	330.65	286.15	147.07	360.3	300.43	204.16	291.51	321.9	160.5
Merged-chr13-3541679-3	chr13	3541185	3542185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	3610.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	28.03	46.08	43.47	25.64	29.86	40.19	41.19	34.93	41.22
Merged-chr12-102445628-3	chr12	102445131	102446131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5818.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	167.04	160.81	136.89	185.55	132.95	128.61	183.78	197.65	91.18
Merged-chr10-79704412-3	chr10	79703939	79704939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009768)	promoter-TSS (NM_009768)	81.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	107.55	101.37	60.12	112.68	84.9	85.2	142.59	115.41	56.83
Merged-chrX-152342598-3	chrX	152342091	152343091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358369)	promoter-TSS (NM_001358369)	-107.0	NM_001358369	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	176.19	142.38	135.04	164.63	132.95	151.11	142.59	149.89	103.05
Merged-chr17-15761433-3	chr17	15760955	15761955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 30 of 35)	intron (NM_007690, intron 30 of 35)	56488.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	87.52	99.53	42.55	76.24	62.51	50.64	66.54	69.42	48.71
Merged-chr7-43747980-3	chr7	43747454	43748454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077063, intron 2 of 2)	intron (NR_077063, intron 2 of 2)	7982.0	NR_077063	100504720.0	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	10.87	8.75	6.47	10.12	8.86	12.86	9.51	10.17	13.12
Merged-chr11-60830675-3	chr11	60830160	60831160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	29.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	102.4	95.38	72.15	159.23	121.29	127.0	173.21	173.33	83.06
Merged-chr15-64242686-3	chr15	64242186	64243186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	69987.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	161.32	136.85	80.47	137.64	89.57	112.53	142.59	132.21	93.05
Merged-chr10-96333460-3	chr10	96332981	96333981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	107274.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	270.01	281.54	173.89	300.25	283.64	217.02	279.89	311.73	151.76
Merged-chr9-14074442-3	chr9	14073945	14074945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-201856.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	12.59	17.05	24.05	12.82	9.33	15.27	10.56	12.38	15.61
Merged-chr17-21532294-3	chr17	21531801	21532801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131123, intron 2 of 2)	intron (NR_131123, intron 2 of 2)	-3238.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	124.14	109.21	59.2	119.43	103.56	110.92	114.07	68.09	74.94
Merged-chr8-83741279-3	chr8	83740776	83741776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163031)	promoter-TSS (NM_001163031)	35.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	291.75	285.23	222.91	317.12	264.51	223.45	360.16	389.11	169.25
Merged-chr14-77897325-1	chr14	77896825	77897825	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-6914.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	8.58	5.53	1.85	1.35	2.8	3.22	6.34	4.86	7.49
Merged-chr15-59809487-3	chr15	59808971	59809971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	164.75	167.26	137.82	136.29	100.77	133.43	145.75	210.03	108.67
Merged-chr3-148918609-3	chr3	148918102	148919102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	URR1B|DNA|hAT-Charlie	36033.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	57.78	42.39	30.52	89.74	47.12	31.35	44.36	31.39	24.36
Merged-chr17-34304914-3	chr17	34304425	34305425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-942.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	336.37	245.6	206.26	125.5	52.25	60.28	260.88	272.37	104.3
Merged-chr7-121120314-3	chr7	121119814	121120814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139310, intron 12 of 28)	intron (NM_139310, intron 12 of 28)	36876.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	28.6	18.43	19.42	46.56	20.99	28.13	31.69	21.67	13.12
Merged-chr7-127745941-3	chr7	127745436	127746436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172748)	promoter-TSS (NM_172748)	-839.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	17.16	16.59	33.3	30.36	20.99	29.74	22.18	38.03	12.49
Merged-chr19-38396012-3	chr19	38395504	38396504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175507)	promoter-TSS (NM_175507)	24.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	16.02	6.91	1.85	18.22	7.93	9.65	16.9	5.31	7.49
Merged-chr6-88518928-3	chr6	88518427	88519427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	-127.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	204.8	253.89	198.87	217.26	224.39	196.93	175.33	166.7	114.91
Merged-chr1-156996658-3	chr1	156996156	156997156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57030.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	37.76	27.19	22.2	43.18	23.79	18.49	38.02	40.24	16.86
Merged-chr9-56937406-3	chr9	56936886	56937886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133976)	promoter-TSS (NM_133976)	-114.0	NM_133976	102462.0	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	113.84	125.33	158.17	114.7	139.49	113.33	100.34	104.35	73.69
Merged-chr2-148681538-2	chr2	148681059	148682059	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	439.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	187.63	164.5	113.77	201.07	129.22	129.41	180.61	196.76	126.15
Merged-chr13-81783768-3	chr13	81783276	81784276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007684, intron 1 of 4)	CpG	529.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	365.54	358.95	247.89	360.97	343.35	275.7	345.37	407.24	227.95
Merged-chr17-86167005-2	chr17	86166496	86167496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-789.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	331.22	329.46	283.96	280.68	368.08	231.49	265.1	247.61	132.4
Merged-chr4-95050747-3	chr4	95050268	95051268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010591, exon 1 of 1)	exon (NM_010591, exon 1 of 1)	1454.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	279.16	327.62	160.02	218.61	230.46	186.48	186.94	243.19	146.14
Merged-chr8-70353354-3	chr8	70352843	70353843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-64.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	161.32	90.31	114.69	118.08	95.17	114.94	138.36	81.36	88.06
Merged-chr17-56716996-3	chr17	56716513	56717513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	-92.0	NM_178926	106639.0	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	54.35	33.18	49.02	56.68	34.06	56.27	66.54	56.6	36.85
Merged-chr2-51982421-2	chr2	51981928	51982928	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9220.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	1.72	3.23	9.25	66.8	50.85	32.15	40.14	35.82	14.99
Merged-chr6-108537131-3	chr6	108536633	108537633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	47390.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	56.63	26.26	25.9	95.14	29.39	43.4	67.6	35.82	13.74
Merged-chr11-101972292-3	chr11	101971806	101972806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5291.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	112.69	137.77	120.24	140.34	129.69	108.51	137.3	149.89	94.3
Merged-chr10-44458727-3	chr10	44458188	44459188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	60.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	105.83	160.81	119.32	118.75	132.49	123.78	139.42	165.37	114.91
Merged-chr8-128076451-3	chr8	128075944	128076944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201781.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	8.58	11.06	12.02	4.72	6.06	12.86	8.45	15.92	13.74
Merged-chr11-54068050-3	chr11	54067552	54068552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	965.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	172.19	152.06	132.27	132.92	86.77	127.8	162.65	155.2	95.55
Merged-chr9-75434291-3	chr9	75433803	75434803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7221.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	195.07	175.1	110.07	214.56	152.08	148.7	183.78	240.98	90.56
Merged-chr7-66124795-3	chr7	66124299	66125299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	15284.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	52.63	55.29	55.5	49.25	38.25	61.09	35.91	28.74	33.72
Merged-chr13-114818156-3	chr13	114817640	114818640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013826)	promoter-TSS (NM_013826)	-97.0	NM_013826	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	100.11	102.29	50.87	138.99	161.41	81.99	180.61	175.98	58.08
Merged-chr2-131517748-3	chr2	131517246	131518246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 3 of 3)	intron (NM_001177840, intron 3 of 3)	25884.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	33.18	19.35	22.2	27.66	13.53	34.56	26.4	19.01	9.37
Merged-chr1-130715901-4	chr1	130715412	130716412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027859)	promoter-TSS (NR_027859)	-91.0	NR_027859	18640.0	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	138.44	151.6	92.5	126.85	138.09	127.0	154.2	143.7	67.45
Merged-chr6-120479451-3	chr6	120478947	120479947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	14360.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	69.79	61.28	79.55	92.44	64.84	128.61	78.16	85.78	71.82
Merged-chr1-151036710-3	chr1	151036224	151037224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43289.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	40.04	49.76	44.4	60.05	46.65	59.48	73.93	72.52	48.09
Merged-chrX-13230822-3	chrX	13230324	13231324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR72_RN|LTR|ERV1	5459.0	NR_045430	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	53.2	87.55	54.57	47.9	65.31	40.19	58.09	95.95	49.96
Merged-chr18-53267790-3	chr18	53267280	53268280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	MMAR1|DNA|TcMar-Mariner	22118.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	314.63	279.7	190.54	323.86	284.1	221.04	310.52	379.38	133.65
Merged-chr9-21963547-3	chr9	21963045	21964045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010149)	promoter-TSS (NM_010149)	31.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	71.51	41.47	37.92	82.99	81.17	60.28	26.4	52.62	23.11
Merged-chr4-147904841-3	chr4	147904315	147905315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285922)	promoter-TSS (NM_001285922)	94.0	NM_001285922	170731.0	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	205.37	246.52	109.14	153.84	198.73	118.96	254.54	195.88	79.94
Merged-chr13-60670798-3	chr13	60670306	60671306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	68595.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	243.69	225.32	125.79	234.8	200.13	131.02	175.33	219.76	113.66
Merged-chr6-85069446-3	chr6	85068934	85069934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177077)	promoter-TSS (NM_177077)	79.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	38.33	15.67	29.6	35.09	27.52	38.58	30.63	24.76	13.74
Merged-chr12-84752244-3	chr12	84751756	84752756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20856.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	348.38	369.09	239.56	288.78	362.01	244.35	317.91	404.14	144.27
Merged-chr15-64100660-3	chr15	64100154	64101154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-40206.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	121.28	102.75	75.85	109.98	74.64	99.67	111.96	79.15	54.33
Merged-chr11-97188099-3	chr11	97187579	97188579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-187.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	141.3	107.82	128.57	138.99	84.44	102.08	98.23	112.31	72.45
Merged-chr2-26941692-3	chr2	26941193	26942193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198628, intron 5 of 18)	intron (NM_198628, intron 5 of 18)	7624.0	NM_198628	279029.0	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	101.25	96.3	50.87	114.03	95.17	83.59	77.1	78.71	57.46
Merged-chr4-67448027-2	chr4	67447510	67448510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	620459.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	12.59	6.45	7.4	7.42	5.6	12.86	2.11	5.75	1.87
Merged-chr2-122164491-3	chr2	122163976	122164976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3776.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	176.19	177.4	109.14	194.99	198.73	171.21	196.45	273.26	109.29
Merged-chr1-74435763-3	chr1	74435253	74436253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009509)	TTS (NM_009509)	26369.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	77.8	73.73	49.02	65.45	54.58	57.87	58.09	59.69	43.72
Merged-chr10-20123587-3	chr10	20123082	20124082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 23 of 29)	intron (NM_008580, intron 23 of 29)	-25338.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	30.89	18.43	22.2	22.27	20.53	24.92	22.18	13.27	19.36
Merged-chr16-91061765-3	chr16	91061270	91062270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	7375.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	100.11	58.98	20.35	130.22	110.56	47.42	100.34	90.2	37.47
Merged-chr3-27153926-3	chr3	27153429	27154429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177626)	promoter-TSS (NM_001177626)	-51.0	NM_001177626	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	56.63	60.36	23.12	42.51	43.39	20.9	42.25	42.01	9.99
Merged-chr1-64928103-3	chr1	64927611	64928611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	LTR79|LTR|ERVL	28713.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	156.74	179.25	122.09	154.51	174.94	182.46	213.35	241.87	117.41
Merged-chr4-109666876-3	chr4	109666363	109667363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301368)	promoter-TSS (NM_001301368)	-107.0	NM_001301368	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	197.36	179.25	206.26	99.86	99.37	107.71	207.01	178.64	135.52
Merged-chr7-122021120-3	chr7	122020604	122021604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028758)	promoter-TSS (NM_028758)	94.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	80.66	42.85	53.65	68.82	81.17	47.42	71.82	69.86	31.23
Merged-chr15-5446570-3	chr15	5446071	5447071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49747.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	116.13	124.87	45.32	138.32	128.29	77.16	163.71	186.59	64.95
Merged-chr7-80261263-3	chr7	80260778	80261778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028053)	promoter-TSS (NR_028053)	63.0	NM_031375	83485.0	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	78.94	82.94	102.67	77.59	85.84	115.75	107.73	75.17	91.18
Merged-chr1-92907437-3	chr1	92906941	92907941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_138577)	TTS (NR_138577)	452.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	65.79	75.11	92.5	64.1	70.91	63.5	91.89	80.03	65.58
Merged-chr10-91137568-3	chr10	91137081	91138081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13618.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	121.85	122.11	99.89	123.47	126.89	134.23	129.91	149.45	91.18
Merged-chr4-151988911-3	chr4	151988401	151989401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145929)	promoter-TSS (NM_001145929)	85.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	34.9	35.48	12.95	28.34	38.72	43.4	21.12	12.82	16.24
Merged-chr3-98026250-3	chr3	98025811	98026811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12773.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	299.18	305.04	162.79	344.11	289.7	204.16	200.68	243.19	129.28
Merged-chr8-126869131-3	chr8	126868619	126869619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	20099.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	173.9	115.2	108.22	184.87	132.95	137.45	180.61	175.1	116.16
Merged-chr12-21315802-2	chr12	21315291	21316291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	-601.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	17.16	23.04	24.05	18.22	18.66	38.58	7.39	9.73	13.74
Merged-chr9-57468041-3	chr9	57467486	57468486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020270)	promoter-TSS (NM_020270)	74.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	42.33	40.09	62.9	42.51	37.79	43.4	49.64	42.45	26.85
Merged-chr16-65739858-1	chr16	65739358	65740358	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75775.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	5.28	7.96	9.99
Merged-chr2-129360828-1	chr2	129360328	129361328	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-9074.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	41.76	33.64	40.7	85.69	54.58	77.16	35.91	28.3	33.1
Merged-chr3-83863142-3	chr3	83862647	83863647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21539.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	205.94	189.38	106.37	202.42	138.09	124.59	179.55	143.7	89.31
Merged-chr17-48409051-3	chr17	48408554	48409554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357903)	promoter-TSS (NM_001357903)	766.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	290.6	352.5	302.46	224.68	302.3	224.26	234.47	267.51	205.47
Merged-chr7-7281596-3	chr7	7281083	7282083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302386)	TTS (NM_001302386)	-3294.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	36.61	58.98	41.62	51.28	49.92	42.6	90.83	77.38	44.97
Merged-chr6-142746962-3	chr6	142746464	142747464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9722.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	212.8	216.57	88.8	213.21	218.79	172.01	204.9	267.07	141.14
Merged-chr1-124073255-3	chr1	124072783	124073783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27724.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	64.64	56.68	49.02	70.17	46.18	65.11	73.93	66.77	70.57
Merged-chr3-88745178-3	chr3	88744673	88745673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	27426.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	66.93	46.08	73.07	39.13	31.72	32.96	44.36	36.26	20.61
Merged-chr2-153345664-3	chr2	153345183	153346183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039939)	promoter-TSS (NM_001039939)	127.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	98.39	94.46	111.92	105.93	79.77	104.49	91.89	87.55	66.82
Merged-chrX-101429104-3	chrX	101428602	101429602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252518)	promoter-TSS (NM_001252518)	-549.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	148.73	158.05	58.27	122.8	124.56	98.06	133.08	164.04	72.45
Merged-chr15-101977530-3	chr15	101977029	101978029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23242.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	367.26	411.94	318.18	290.8	342.88	366.53	337.98	403.7	265.42
Merged-chr10-79746643-3	chr10	79746137	79747137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172551)	promoter-TSS (NM_172551)	-56.0	NM_172551	216151.0	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	25.17	18.43	24.05	18.89	24.72	30.54	24.29	22.99	39.97
Merged-chr1-120517767-3	chr1	120517275	120518275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12751.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	48.62	25.34	31.45	22.27	12.13	15.27	43.3	15.48	18.11
Merged-chr13-64129373-3	chr13	64128919	64129919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-89.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	36.61	27.65	40.7	41.83	34.99	64.3	81.33	83.57	63.08
Merged-chr11-29549601-3	chr11	29549108	29550108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163521, intron 1 of 11)	intron (NM_001163521, intron 1 of 11)	-1568.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	62.35	41.47	25.9	54.65	57.38	53.85	42.25	49.08	33.1
Merged-chr10-75282853-3	chr10	75282341	75283341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-34036.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	10.3	11.52	1.85	10.8	12.13	11.25	11.62	11.5	6.87
Merged-chr2-103606351-3	chr2	103605840	103606840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40030.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	61.21	50.69	38.85	44.53	23.33	42.6	42.25	38.03	24.98
Merged-chr8-41073983-1	chr8	41073483	41074483	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-19187.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.29	3.23	5.55	2.02	1.87	0.0	3.17	3.98	8.74
Merged-chr14-102980035-3	chr14	102979536	102980536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	2596.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	156.74	208.27	83.25	166.66	125.96	71.54	170.05	204.72	96.8
Merged-chr1-37000498-3	chr1	37000005	37001005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-60978.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	81.23	82.02	50.87	84.34	57.38	55.46	79.21	90.64	54.96
Merged-chr3-75956286-3	chr3	75955782	75956782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175193, exon 1 of 15)	exon (NM_175193, exon 1 of 15)	667.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	66.93	69.12	75.85	59.38	60.18	87.61	60.2	52.62	54.33
Merged-chr3-90476023-3	chr3	90475458	90476458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026374)	promoter-TSS (NM_026374)	-243.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	45.19	31.79	29.6	39.81	24.72	40.19	40.14	44.22	21.86
Merged-chr6-72407341-3	chr6	72406841	72407841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6967.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	8.58	5.07	3.7	6.75	7.93	4.82	5.28	2.65	0.0
Merged-chr10-57727856-3	chr10	57727359	57728359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-57064.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	264.29	324.85	157.24	271.24	295.3	196.93	235.53	439.07	148.01
Merged-chr10-63176607-3	chr10	63176102	63177102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	Charlie1a|DNA|hAT-Charlie	27350.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	83.52	96.3	60.12	97.16	46.65	81.18	118.29	80.92	78.07
Merged-chr2-102638295-3	chr2	102637786	102638786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173749, intron 8 of 10)	intron (NM_173749, intron 8 of 10)	-20403.0	NM_001077514	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	10.87	6.45	3.7	15.52	8.4	3.22	15.84	18.57	6.25
Merged-chr13-52061622-3	chr13	52061116	52062116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	90.96	87.09	82.32	71.52	74.64	141.47	98.23	78.71	79.94
Merged-chr2-30952928-3	chr2	30952442	30953442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133673)	promoter-TSS (NM_133673)	-59.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	65.79	64.97	82.32	58.7	52.72	81.99	67.6	47.75	62.45
Merged-chr6-29245935-3	chr6	29245441	29246441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26547.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	160.75	79.25	33.3	173.4	150.22	106.1	101.39	61.46	38.1
Merged-chr7-80766265-3	chr7	80765784	80766784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 4 of 37)	intron (NM_016721, intron 4 of 37)	37047.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	53.77	33.64	22.2	56.0	36.39	24.92	33.8	26.09	9.99
Merged-chr7-99101898-3	chr7	99101409	99102409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39235.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	211.09	193.53	77.7	181.5	108.23	89.22	186.94	192.78	78.69
Merged-chrX-70477139-3	chrX	70476637	70477637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357750)	promoter-TSS (NM_001357750)	43.0	NM_001033328	236848.0	Mm.24569	NM_001033328	ENSMUSG00000073139	Tmem185a	ee3	transmembrane protein 185A	protein-coding	20.02	25.8	27.75	32.39	25.19	54.66	28.52	21.22	19.98
Merged-chrX-155262428-3	chrX	155261941	155262941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313718)	promoter-TSS (NM_001313718)	-2.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	86.95	123.49	65.67	120.77	113.83	87.61	87.66	89.76	60.58
Merged-chr10-112140011-3	chr10	112139518	112140518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23603.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	19.45	32.25	21.27	22.94	20.53	32.96	22.18	26.09	31.23
Merged-chr7-39552680-3	chr7	39552235	39553235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	34969.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	152.74	178.32	114.69	139.67	157.68	119.76	188.0	164.04	89.93
Merged-chr11-75461442-3	chr11	75460940	75461940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-99.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	290.03	294.44	158.17	296.2	252.38	197.73	253.48	315.71	133.65
Merged-chr11-29808774-3	chr11	29808304	29809304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	16864.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	155.6	161.27	88.8	200.39	177.74	118.96	264.05	301.56	100.55
Merged-chr1-125560469-3	chr1	125559971	125560971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356294)	promoter-TSS (NM_001356294)	-124.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	150.45	162.66	133.19	183.52	117.56	155.93	215.46	222.85	85.56
Merged-chr18-4303315-3	chr18	4302809	4303809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49644.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	129.28	126.25	103.59	138.32	135.29	67.52	134.14	144.59	76.19
Merged-chr6-86404255-3	chr6	86403752	86404752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011585)	promoter-TSS (NM_011585)	33.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	296.32	264.95	200.71	261.12	289.24	173.62	258.77	269.28	144.27
Merged-chr9-88404312-3	chr9	88403793	88404793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359958, intron 12 of 28)	intron (NM_001359958, intron 12 of 28)	34658.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	45.19	45.62	24.05	34.41	35.92	49.03	51.75	46.87	26.85
Merged-chr4-99929429-3	chr4	99928919	99929919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-32.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	84.09	74.65	67.52	84.34	105.9	114.94	106.67	87.11	53.71
Merged-chr2-3668902-3	chr2	3668397	3669397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44561.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	29.75	35.02	16.65	31.04	16.79	18.49	23.24	28.3	23.11
Merged-chr15-57906838-3	chr15	57906335	57907335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5364.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	208.23	198.6	115.62	192.29	187.07	159.15	175.33	186.15	107.42
Merged-chr16-4719254-3	chr16	4718749	4719749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290761, exon 1 of 5)	5' UTR (NM_001290761, exon 1 of 5)	107.0	NM_001290763	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	60.64	77.41	75.85	94.46	69.51	77.16	92.94	95.07	51.21
Merged-chr14-55559999-3	chr14	55559521	55560521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133734)	promoter-TSS (NM_133734)	-8.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	448.49	492.58	283.96	440.59	509.89	319.1	480.56	616.38	236.7
Merged-chr14-27381573-3	chr14	27381083	27382083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	URR1A|DNA|hAT-Charlie	20194.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	157.89	119.8	59.2	178.8	143.22	92.44	140.47	173.33	54.96
Merged-chr6-129407509-3	chr6	129407052	129408052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1310.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	135.58	156.67	82.32	147.76	98.43	110.92	127.8	128.23	78.07
Merged-chr5-103691712-3	chr5	103691207	103692207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35975.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	87.52	123.03	90.65	82.99	75.11	86.01	118.29	149.89	79.32
Merged-chr9-71167246-3	chr9	71166743	71167743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1533.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	7.44	9.68	1.85	12.82	5.6	7.23	15.84	7.07	6.25
Merged-chr19-56822279-3	chr19	56821759	56822759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3950.0	NM_001002238	83561.0	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	188.21	166.34	151.69	216.58	212.26	136.64	200.68	148.13	89.93
Merged-chr3-32709107-1	chr3	32708607	32709607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019673, intron 1 of 13)	CpG	561.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	77.8	72.8	70.3	55.33	61.11	65.91	95.06	76.49	52.46
Merged-chr10-120227053-3	chr10	120226559	120227559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025431)	promoter-TSS (NM_025431)	-1.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	118.42	95.84	86.02	124.15	129.22	127.0	126.74	136.19	61.83
Merged-chr17-72904019-3	chr17	72903512	72904512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14293.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	87.52	44.7	42.55	91.09	60.18	71.54	47.53	41.56	21.86
Merged-chr1-181842465-3	chr1	181841960	181842960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133815)	promoter-TSS (NM_133815)	-59.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	277.45	219.33	211.81	225.36	180.54	230.69	191.17	159.18	139.27
Merged-chr15-38483524-3	chr15	38483021	38484021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7026.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	116.7	90.77	78.62	146.41	123.16	127.8	114.07	112.31	86.81
Merged-chr6-15758679-3	chr6	15758165	15759165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	38004.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	71.51	71.88	57.35	93.79	87.7	82.79	82.38	83.57	68.7
Merged-chr8-70646113-3	chr8	70645673	70646673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023217)	TTS (NM_023217)	13565.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	503.98	394.43	190.54	147.09	104.5	32.96	273.55	340.91	107.42
Merged-chr18-80255247-3	chr18	80254769	80255769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164420)	promoter-TSS (NM_001164420)	24.0	NM_001164420	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	66.93	61.28	63.82	59.38	47.58	64.3	46.47	48.2	43.09
Merged-chr1-127270680-4	chr1	127270139	127271139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	C-rich|Low_complexity|Low_complexity	65653.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	81.23	83.4	60.12	86.36	92.37	87.61	84.49	101.7	68.7
Merged-chr2-27476063-2	chr2	27475562	27476562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113574)	promoter-TSS (NM_001113574)	-389.0	NM_001113574	67382.0	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	33.75	22.58	43.47	31.71	27.06	65.11	38.02	31.84	39.35
Merged-chr2-102977993-3	chr2	102977490	102978490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76325.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	161.89	128.56	74.0	179.47	106.83	118.16	189.06	177.31	106.17
Merged-chr1-170939471-3	chr1	170938989	170939989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11906.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	24.03	14.28	4.62	45.88	36.85	35.37	26.4	25.65	9.99
Merged-chr7-127769097-3	chr7	127768616	127769616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	-699.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	69.79	68.2	67.52	49.93	40.59	61.09	70.76	69.42	42.47
Merged-chr14-25493722-3	chr14	25493240	25494240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	34555.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	52.06	23.5	8.32	48.58	25.66	25.72	16.9	19.9	7.49
Merged-chr11-97436089-3	chr11	97435633	97436633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14027.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	453.64	414.24	279.34	475.68	400.26	326.34	288.34	286.52	163.0
Merged-chr7-25707731-3	chr7	25707232	25708232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11321.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	196.21	177.4	166.49	163.28	181.01	170.4	209.12	207.82	96.18
Merged-chr2-155729447-3	chr2	155728940	155729940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145537)	promoter-TSS (NM_145537)	35.0	NM_145537	108687.0	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	38.9	20.27	14.8	49.25	47.12	32.15	57.03	27.86	16.86
Merged-chr6-87535262-4	chr6	87534721	87535721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1962.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	406.16	344.67	223.84	462.18	293.9	273.29	305.24	386.01	175.49
Merged-chr11-82890577-3	chr11	82890047	82891047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102717)	promoter-TSS (NR_102717)	77.0	NR_102719	19364.0	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	37.18	26.73	39.77	47.9	66.71	73.95	65.48	48.2	28.1
Merged-chr10-30804046-3	chr10	30803514	30804514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358841)	promoter-TSS (NM_001358841)	-688.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	110.41	141.46	130.42	136.97	139.02	123.78	83.44	120.27	79.32
Merged-chr10-79857714-3	chr10	79857252	79858252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077363, intron 2 of 13)	intron (NM_001077363, intron 2 of 13)	-2781.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	88.1	59.44	89.72	84.34	66.71	92.44	101.39	74.28	65.58
Merged-chr9-25486464-3	chr9	25485964	25486964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4867.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	38.33	39.63	19.42	35.09	26.59	24.11	44.36	30.51	7.49
Merged-chr5-33018751-3	chr5	33018253	33019253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011738)	promoter-TSS (NM_011738)	-63.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	237.97	193.99	178.52	193.64	195.93	190.5	230.25	194.11	148.01
Merged-chr4-119733667-3	chr4	119733147	119734147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-74702.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	53.2	40.09	69.37	41.83	28.46	46.62	57.03	34.49	33.72
Merged-chr16-14112953-3	chr16	14112461	14113461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46313.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	52.06	64.51	54.57	73.54	62.51	88.42	60.2	66.33	49.96
Merged-chr7-101011981-3	chr7	101011429	101012429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008773)	promoter-TSS (NM_008773)	69.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	38.9	16.13	12.95	76.92	63.91	36.97	41.19	8.84	12.49
Merged-chr7-134693350-3	chr7	134692832	134693832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	MTD|LTR|ERVL-MaLR	22645.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	44.62	32.25	52.72	56.68	27.52	39.39	48.58	42.01	33.1
Merged-chr7-45525052-3	chr7	45524556	45525556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	1212.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	263.14	268.64	202.56	246.95	167.48	184.07	203.84	223.74	182.99
Merged-chr8-119826596-3	chr8	119826102	119827102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13977.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	142.44	109.67	122.09	182.85	97.03	157.54	145.75	154.76	86.18
Merged-chr18-12949307-3	chr18	12948802	12949802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7461.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	1.14	4.15	5.55	2.02	1.4	4.02	3.17	1.33	1.87
Merged-chr5-90904555-2	chr5	90904042	90905042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	643.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	15.45	11.52	12.95	20.92	12.6	12.06	16.9	5.75	9.37
Merged-chr17-55726394-3	chr17	55725886	55726886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13750.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	73.79	77.87	50.87	84.34	53.18	59.48	54.92	61.02	37.47
Merged-chr1-193173549-3	chr1	193173051	193174051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-26.0	NM_001160359	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	128.14	152.06	106.37	145.06	155.81	122.18	125.69	164.49	101.8
Merged-chr3-57737041-1	chr3	57736541	57737541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	984.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	64.64	108.75	53.65	51.28	96.1	91.63	87.66	119.39	55.58
Merged-chr10-96691143-3	chr10	96690669	96691669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	196.79	154.36	108.22	166.66	142.29	109.32	159.48	197.21	95.55
Merged-chr12-71137199-3	chr12	71136711	71137711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286203)	promoter-TSS (NM_001286203)	363.0	NM_001163378	76967.0	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	76.66	97.69	64.75	64.1	84.9	71.54	125.69	119.39	65.58
Merged-chr15-97348604-3	chr15	97348089	97349089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-101302.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	53.77	47.0	56.42	78.27	50.85	68.32	80.27	74.73	48.09
Merged-chr6-82652978-3	chr6	82652479	82653479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025882)	promoter-TSS (NM_025882)	-114.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	204.22	200.9	143.37	182.85	219.26	161.56	184.83	153.43	108.67
Merged-chr5-30013061-6	chr5	30012548	30013548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031168)	promoter-TSS (NM_031168)	-66.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	108.12	100.91	74.0	80.97	37.32	107.71	122.52	110.98	72.45
Merged-chr19-8893010-3	chr19	8892514	8893514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176843)	promoter-TSS (NM_176843)	27.0	NM_176843	109077.0	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	88.1	67.74	51.8	97.16	54.58	101.28	98.23	71.63	69.95
Merged-chr17-32608266-3	chr17	32607759	32608759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13060.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	16.59	19.81	9.25	16.87	14.0	23.31	12.67	16.36	24.36
Merged-chr9-99122936-3	chr9	99122451	99123451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	17260.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	26.31	17.51	11.1	25.64	12.13	9.65	28.52	23.88	7.49
Merged-chr16-76763071-3	chr16	76762569	76763569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16023.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	117.84	113.81	72.15	120.77	108.7	91.63	250.32	278.57	81.19
Merged-chr1-36445341-3	chr1	36444830	36445830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310517)	promoter-TSS (NM_001310517)	-59.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	28.6	39.17	32.37	43.86	43.85	40.99	51.75	57.48	33.72
Merged-chr2-101763239-3	chr2	101762746	101763746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	34461.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	123.56	131.78	82.32	115.38	90.97	93.24	91.89	114.52	66.2
Merged-chr6-52477639-3	chr6	52477161	52478161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14790.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	35.47	17.97	24.97	24.96	19.13	16.08	26.4	23.43	7.49
Merged-chr1-105988260-3	chr1	105987685	105988685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	2097.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	207.08	154.82	64.75	221.31	157.68	114.94	264.05	291.83	133.65
Merged-chr12-111669362-3	chr12	111668871	111669871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021273)	TTS (NM_021273)	2967.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	180.2	148.37	142.44	152.49	92.37	167.19	152.09	124.69	87.43
Merged-chr19-41911808-3	chr19	41911301	41912301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023418)	promoter-TSS (NM_023418)	-70.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	97.82	111.05	75.85	107.95	137.15	103.69	87.66	110.98	84.31
Merged-chr8-84414392-2	chr8	84413891	84414891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007578)	promoter-TSS (NM_007578)	-973.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	184.77	153.44	92.5	190.95	143.68	148.7	2.11	1.33	7.49
Merged-chr11-82101705-3	chr11	82101199	82102199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011331)	promoter-TSS (NM_011331)	-146.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	127.57	104.14	77.7	172.05	98.43	62.7	153.15	168.47	77.44
Merged-chr4-120978476-3	chr4	120977975	120978975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 4 of 9)	intron (NM_133716, intron 4 of 9)	-5153.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	20.59	36.4	30.52	43.86	41.99	65.91	32.74	30.95	31.85
Merged-chr5-33658548-3	chr5	33658118	33659118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356983)	promoter-TSS (NM_001356983)	490.0	NM_001040435	21335.0	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	148.73	139.16	126.72	139.67	103.1	127.0	161.6	181.29	121.78
Merged-chr8-69089488-3	chr8	69088997	69089997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-275.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	178.48	205.05	144.29	174.75	201.07	163.17	254.54	309.96	133.65
Merged-chr19-4299770-3	chr19	4299290	4300290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	6432.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	110.41	115.66	129.49	122.12	125.49	163.17	138.36	150.78	127.4
Merged-chr1-184471545-3	chr1	184471045	184472045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86146.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	8.01	9.22	0.92	18.22	5.6	8.04	6.34	5.31	5.0
Merged-chr4-63556906-3	chr4	63556419	63557419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1844.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	65.79	73.26	47.17	80.29	73.24	68.32	105.62	112.75	39.97
Merged-chr9-110408242-3	chr9	110407727	110408727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081043)	promoter-TSS (NM_001081043)	-17.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	233.97	230.39	150.77	230.75	222.06	144.68	200.68	221.97	94.93
Merged-chr7-81345285-3	chr7	81344791	81345791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-57.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	143.01	89.85	66.6	107.28	92.37	87.61	118.29	87.99	73.69
Merged-chr1-80757598-3	chr1	80757092	80758092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	961.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	80.66	74.19	24.97	70.17	62.05	32.15	101.39	66.33	31.23
Merged-chr19-56740335-3	chr19	56739826	56740826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17954.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	38.33	34.56	14.8	39.81	26.59	30.54	32.74	38.91	16.24
Merged-chr6-71633474-3	chr6	71632981	71633981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-564.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	112.12	113.81	106.37	114.03	75.57	122.98	130.97	105.24	71.2
Merged-chr11-88973946-3	chr11	88973440	88974440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016706)	promoter-TSS (NM_016706)	5.0	NM_016706	12812.0	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	42.33	29.95	22.2	31.04	28.46	25.72	33.8	29.18	18.74
Merged-chr7-145111589-3	chr7	145111104	145112104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96515.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	511.42	446.04	312.63	391.34	322.36	249.98	442.54	531.04	227.95
Merged-chr14-50838202-3	chr14	50837712	50838712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 35 of 54)	intron (NM_009351, intron 35 of 54)	30296.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	144.73	132.25	129.49	119.43	127.36	115.75	204.9	279.89	154.88
Merged-chr13-19418078-3	chr13	19417579	19418579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22266.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	82.95	99.07	67.52	87.04	70.44	48.23	101.39	95.07	48.09
Merged-chr7-31031940-3	chr7	31031448	31032448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001111073)	TTS (NM_001111073)	8369.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	32.04	24.42	24.05	41.16	25.19	57.87	65.48	47.31	43.72
Merged-chr5-105495346-3	chr5	105494833	105495833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24138.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	89.24	47.0	29.6	76.92	48.98	21.7	17.96	7.52	2.5
Merged-chr19-5806958-3	chr19	5806454	5807454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4282.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	328.93	230.39	246.04	297.55	208.06	220.24	249.26	277.24	144.27
Merged-chr10-75222780-3	chr10	75222286	75223286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145826, intron 2 of 18)	intron (NM_001145826, intron 2 of 18)	10396.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	311.77	322.09	194.24	234.13	230.92	148.7	257.71	286.52	146.14
Merged-chr13-60702048-3	chr13	60701612	60702612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	Tigger20a|DNA|TcMar-Tigger	84252.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	85.24	102.75	71.22	80.29	76.04	110.92	54.92	50.85	49.34
Merged-chr18-35562149-3	chr18	35561646	35562646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010771)	promoter-TSS (NM_010771)	-12.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	294.04	278.31	254.36	274.61	271.04	223.45	216.52	201.19	166.75
Merged-chrX-57707063-3	chrX	57706564	57707564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-203307.0	NM_001033360	245424.0	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	10.87	11.52	1.85	16.87	8.86	3.22	15.84	4.86	8.74
Merged-chr3-41564866-4	chr3	41564348	41565348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130186)	promoter-TSS (NM_001130186)	-32.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	73.22	57.6	41.62	127.52	85.84	56.27	83.44	64.56	43.72
Merged-chr10-84774820-3	chr10	84774316	84775316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	18768.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	6.29	5.53	3.7	8.77	6.06	4.02	6.34	5.31	6.25
Merged-chr18-83828588-3	chr18	83828082	83829082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	257980.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	42.9	61.75	78.62	43.86	41.52	46.62	26.4	27.86	38.72
Merged-chr1-180778364-3	chr1	180777861	180778861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35244.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	102.4	105.98	125.79	95.81	112.43	120.57	138.36	147.24	71.82
Merged-chr19-12436333-3	chr19	12435853	12436853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	8448.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	297.47	334.99	160.02	319.14	285.04	223.45	272.5	334.28	149.89
Merged-chr1-152797487-3	chr1	152796972	152797972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2681.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	271.15	211.04	148.92	226.71	161.88	188.89	200.68	289.62	155.51
Merged-chr5-147430159-3	chr5	147429761	147430761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359433, exon 1 of 20)	5' UTR (NM_001359433, exon 1 of 20)	105.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	256.85	231.31	271.94	277.98	190.8	210.59	265.1	162.72	163.63
Merged-chr6-126996553-3	chr6	126996050	126997050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18992.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	18.31	11.98	16.65	16.19	8.4	4.82	10.56	7.96	8.74
Merged-chr10-118053226-3	chr10	118052743	118053743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-88544.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	544.6	493.5	220.14	567.44	501.96	318.3	385.51	551.82	217.96
Merged-chr6-113306635-3	chr6	113306142	113307142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282126)	promoter-TSS (NM_001282126)	-495.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	148.73	167.73	106.37	123.47	139.49	94.04	175.33	149.89	83.06
Merged-chr5-135711065-3	chr5	135710573	135711573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	21928.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	98.97	90.31	53.65	142.37	94.7	131.02	129.91	128.23	53.08
Merged-chr2-5035916-3	chr2	5035413	5036413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	ID_B1|SINE|B4	-23122.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	194.5	174.18	123.94	124.82	81.64	114.14	229.19	259.55	109.92
Merged-chr13-100786623-3	chr13	100786134	100787134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172301)	promoter-TSS (NM_172301)	-148.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	9.15	12.9	5.55	16.87	10.26	11.25	15.84	9.73	5.0
Merged-chr12-117481886-3	chr12	117481391	117482391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34588.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	252.85	171.87	107.29	221.98	116.16	110.12	288.34	207.82	124.91
Merged-chr3-105892626-3	chr3	105892125	105893125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11796.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	234.54	185.7	155.39	216.58	160.95	200.95	237.64	237.44	122.41
Merged-chr8-27128713-3	chr8	27128211	27129211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-79.0	NM_025686	66653.0	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	28.6	38.71	12.95	22.27	27.06	32.96	43.3	21.67	14.36
Merged-chr15-59202524-3	chr15	59202011	59203011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104437.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	30.32	38.71	14.8	70.17	50.38	53.05	46.47	32.28	22.48
Merged-chr3-69699970-2	chr3	69699458	69700458	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22097.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	12.59	14.75	12.02	78.27	43.85	60.28	76.05	63.67	63.7
Merged-chr15-79030827-3	chr15	79030350	79031350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161712)	promoter-TSS (NM_001161712)	-24.0	NM_013847	26912.0	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	11.44	9.68	3.7	16.19	11.66	8.04	9.51	3.98	7.49
Merged-chr1-105964701-3	chr1	105964197	105965197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25585.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	149.88	155.28	97.12	175.43	148.35	124.59	163.71	189.25	80.56
Merged-chr4-47320069-3	chr4	47319568	47320568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-33154.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	84.09	69.58	66.6	78.94	55.98	86.01	69.71	63.67	65.58
Merged-chr16-91456084-3	chr16	91455596	91456596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9008.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	139.58	135.47	97.12	117.4	72.78	101.28	176.38	130.44	129.28
Merged-chr17-21488933-3	chr17	21488424	21489424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013843)	promoter-TSS (NM_013843)	-64.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	25.74	23.04	33.3	35.76	27.06	50.64	33.8	49.08	30.6
Merged-chr3-52502890-3	chr3	52502397	52503397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14067.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	74.94	53.91	24.97	80.29	60.65	28.94	52.81	38.03	19.36
Merged-chr18-84087699-2	chr18	84087192	84088192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146090)	promoter-TSS (NM_146090)	-466.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	155.6	160.81	181.29	146.41	111.96	157.54	204.9	130.44	116.16
Merged-chr1-63176784-3	chr1	63176393	63177393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	62.0	NM_018796	55949.0	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	196.21	184.77	153.54	176.1	154.41	130.21	191.17	197.21	128.03
Merged-chr10-8811899-1	chr10	8811399	8812399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	L1MC4|LINE|L1	74171.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	17.73	11.52	9.25	16.19	12.6	18.49	11.62	11.94	6.25
Merged-chr2-91265155-3	chr2	91264668	91265668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166024)	promoter-TSS (NM_001166024)	53.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	281.45	248.36	192.39	266.51	293.43	213.0	217.57	283.87	138.65
Merged-chr8-14892832-3	chr8	14892319	14893319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4283.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	183.06	182.01	164.64	160.58	146.95	151.11	183.78	205.17	116.16
Merged-chr17-36042833-3	chr17	36042318	36043318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347382)	promoter-TSS (NM_001347382)	-76.0	NM_001359756	15039.0	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	152.74	150.68	136.89	166.66	129.69	122.98	194.34	201.63	92.43
Merged-chr15-57924264-3	chr15	57923770	57924770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	L1M2|LINE|L1	12071.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	112.12	168.19	103.59	112.68	102.17	86.81	130.97	176.87	80.56
Merged-chr15-78876368-3	chr15	78875881	78876881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145929)	promoter-TSS (NM_145929)	-809.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	160.75	150.68	108.22	120.1	102.17	106.1	120.41	156.97	56.83
Merged-chr2-30929081-3	chr2	30928576	30929576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23925.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	233.4	176.48	114.69	182.17	174.47	149.5	182.72	196.32	93.05
Merged-chr17-48261999-3	chr17	48261478	48262478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2317.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	50.34	51.15	61.97	37.78	31.72	71.54	49.64	26.53	53.71
Merged-chr18-9828176-1	chr18	9827676	9828676	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	120528.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.44	5.53	11.1	31.04	19.59	43.4	3.17	3.54	3.75
Merged-chr10-81378653-3	chr10	81378158	81379158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019757)	promoter-TSS (NM_019757)	-288.0	NM_019757	56371.0	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy and cell division cycle 20 related 1	protein-coding	242.55	117.04	112.84	191.62	84.44	83.59	170.05	120.71	66.82
Merged-chr9-44396905-3	chr9	44396401	44397401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293630)	promoter-TSS (NM_001293630)	-26.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	286.6	199.98	116.54	286.08	201.53	154.33	179.55	219.31	116.16
Merged-chr4-123564147-3	chr4	123563657	123564657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-52263.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	223.1	277.39	167.42	261.79	209.93	200.95	269.33	294.93	134.27
Merged-chr4-116683242-3	chr4	116682742	116683742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	77.8	82.94	49.95	120.77	76.97	77.16	74.99	96.39	45.59
Merged-chr13-61804280-1	chr13	61803780	61804780	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32700.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	29.57	38.91	27.48
Merged-chr3-38144288-3	chr3	38143775	38144775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63844.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	70.93	83.4	39.77	46.56	31.72	40.19	69.71	75.61	29.35
Merged-chr18-75697630-3	chr18	75697117	75698117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201354)	promoter-TSS (NM_201354)	79.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	34.32	23.5	44.4	45.21	26.12	26.53	42.25	24.76	22.48
Merged-chr5-32135801-3	chr5	32135299	32136299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	-673.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	495.4	486.59	424.55	477.7	513.63	410.74	374.95	470.91	262.3
Merged-chr13-67061094-3	chr13	67060597	67061597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166218)	promoter-TSS (NM_001166218)	73.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	64.64	64.97	64.75	45.88	47.58	63.5	84.49	59.69	51.84
Merged-chr2-68796214-3	chr2	68795715	68796715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65226.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	32.61	35.02	33.3	35.09	34.99	38.58	38.02	19.46	28.1
Merged-chr10-121375452-3	chr10	121374964	121375964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10374.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	314.06	282.0	203.49	329.94	292.5	243.55	326.36	403.7	182.99
Merged-chr18-53744689-3	chr18	53744192	53745192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-145.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	230.54	233.62	129.49	228.05	162.34	102.88	208.07	173.33	118.66
Merged-chr8-57530839-3	chr8	57530345	57531345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 11 of 11)	Lx7|LINE|L1	19002.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	85.24	104.6	59.2	103.91	116.63	88.42	70.76	70.75	47.46
Merged-chr7-99146258-3	chr7	99145733	99146733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5089.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	177.91	153.9	111.92	151.14	124.56	165.58	126.74	187.04	136.77
Merged-chr14-25861986-3	chr14	25861483	25862483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	19828.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	63.5	58.52	33.3	115.38	102.63	70.73	64.43	37.58	23.73
Merged-chr10-78412994-3	chr10	78412488	78413488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010925)	promoter-TSS (NM_010925)	55.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	204.8	232.7	95.27	193.64	224.86	110.92	182.72	143.7	99.3
Merged-chr4-126103858-3	chr4	126103353	126104353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-104.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	287.74	276.47	275.64	253.69	235.12	223.45	211.24	222.85	134.9
Merged-chr6-51545415-3	chr6	51544899	51545899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	106.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	200.79	144.69	192.39	209.84	109.16	105.3	226.02	181.73	107.42
Merged-chr7-130847391-3	chr7	130846908	130847908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18316.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	29.17	21.2	27.75	25.64	23.33	28.94	28.52	26.09	11.24
Merged-chr9-99090121-3	chr9	99089625	99090625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 7 of 23)	intron (NM_029094, intron 7 of 23)	50086.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	155.6	176.94	92.5	198.37	198.73	136.64	207.01	236.12	84.31
Merged-chr16-49965794-3	chr16	49965324	49966324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9994.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	119.56	123.49	109.14	124.82	80.71	103.69	154.2	121.6	90.56
Merged-chr3-81982719-3	chr3	81982218	81983218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6990.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	47.48	72.34	36.07	80.97	107.3	70.73	88.72	110.98	45.59
Merged-chr16-45174048-3	chr16	45173559	45174559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356366, intron 4 of 10)	Lx8|LINE|L1	15230.0	NM_026402	67841.0	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	40.62	23.04	44.4	39.13	23.33	31.35	15.84	10.17	13.74
Merged-chr12-81754848-3	chr12	81754349	81755349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	26321.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	33.18	28.57	38.85	26.99	34.99	42.6	22.18	25.65	35.6
Merged-chr4-151058098-3	chr4	151057607	151058607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009498)	promoter-TSS (NM_009498)	-154.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	332.36	344.67	296.91	313.74	342.42	258.02	291.51	276.8	154.88
Merged-chr11-60936151-2	chr11	60935651	60936651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	MIRb|SINE|MIR	4094.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	136.72	140.54	86.95	172.73	156.28	123.78	109.84	126.02	103.05
Merged-chr6-8059412-1	chr6	8058912	8059912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 26 of 34)	intron (NM_001037865, intron 26 of 34)	133205.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	58.92	52.53	55.5	4.05	2.8	4.82	2.11	2.21	3.75
Merged-chr6-34371868-3	chr6	34371390	34372390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12357.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	13.16	5.07	4.62	10.8	6.53	4.82	12.67	10.17	2.5
Merged-chr14-20734574-3	chr14	20734079	20735079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	-17.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	292.32	265.41	236.79	290.8	249.58	237.12	318.97	252.48	180.49
Merged-chr12-102757879-3	chr12	102757385	102758385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025666)	promoter-TSS (NM_025666)	-75.0	NM_001142938	100233175.0	Mm.291222	NM_001142938	ENSMUSG00000091931	Gon7	-	GON7, KEOPS complex subunit homolog	protein-coding	119.56	85.71	86.02	99.86	109.16	74.75	108.79	87.11	76.82
Merged-chr9-16233746-3	chr9	16233234	16234234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	MTC|LTR|ERVL-MaLR	144497.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.29	1.84	3.7	8.77	7.46	5.63	4.22	10.61	6.25
Merged-chr14-73386790-3	chr14	73386305	73387305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1516.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	168.18	149.29	78.62	163.28	123.62	114.14	159.48	199.86	109.29
Merged-chr4-155487944-3	chr4	155487441	155488441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	82.38	89.85	83.25	77.59	50.85	84.4	94.0	109.66	48.71
Merged-chr17-81670343-3	chr17	81669817	81670817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	CpG	68070.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	50.34	35.48	43.47	66.12	50.85	63.5	50.7	31.84	25.61
Merged-chr11-16951269-3	chr11	16950787	16951787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110425)	promoter-TSS (NR_110425)	-5.0	NR_110423	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	16.02	15.21	9.25	16.19	9.8	8.84	28.52	13.71	21.86
Merged-chr13-9599522-3	chr13	9599015	9600015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 17 of 36)	ORR1E|LTR|ERVL-MaLR	164295.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	18.88	16.59	6.47	13.49	9.33	3.22	15.84	13.71	4.37
Merged-chr3-100162471-3	chr3	100161959	100162959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175552)	promoter-TSS (NM_175552)	-4.0	NM_010269	14547.0	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	145.87	155.75	135.04	126.17	138.55	138.25	158.43	132.21	91.18
Merged-chr1-133133676-3	chr1	133133181	133134181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	2515.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	193.93	199.06	118.39	154.51	133.89	102.88	100.34	149.45	97.43
Merged-chr1-134455548-3	chr1	134455039	134456039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153128)	promoter-TSS (NM_153128)	8.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	30.32	18.43	12.95	51.95	43.85	17.68	62.31	48.2	19.98
Merged-chr13-34875493-3	chr13	34874976	34875976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013830)	promoter-TSS (NM_013830)	-18.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	226.53	203.67	226.61	194.99	199.67	254.8	212.29	189.69	162.38
Merged-chr15-25891771-3	chr15	25891267	25892267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 2 of 8)	ID_B1|SINE|B4	-41785.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	30.89	22.58	4.62	44.53	31.72	32.96	35.91	34.49	14.99
Merged-chr4-129189798-3	chr4	129189302	129190302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029036)	promoter-TSS (NM_029036)	7.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	141.87	128.1	110.99	141.02	123.62	73.95	134.14	141.94	68.07
Merged-chr4-117191950-1	chr4	117191450	117192450	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-9326.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	6.86	5.07	0.0	109.3	128.29	61.89	6.34	2.65	5.62
Merged-chr18-10182225-3	chr18	10181713	10182713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009071)	promoter-TSS (NM_009071)	-421.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	213.38	211.96	165.57	168.0	203.4	166.38	164.76	161.83	131.15
Merged-chr19-5803661-3	chr19	5803157	5804157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-985.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	486.25	458.94	332.98	433.17	450.18	337.59	351.71	436.42	297.28
Merged-chr10-127667793-3	chr10	127667306	127668306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	683.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	225.39	166.34	124.87	222.66	143.68	169.6	246.09	221.53	131.78
Merged-chr5-72262161-3	chr5	72261665	72262665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	58822.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	128.71	120.73	67.52	118.75	80.24	74.75	89.78	99.05	62.45
Merged-chr18-23954731-3	chr18	23954229	23955229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	41.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	140.15	167.73	182.22	157.88	222.06	190.5	179.55	152.55	98.68
Merged-chr10-75835555-3	chr10	75835070	75836070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010361)	promoter-TSS (NM_010361)	-689.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	173.33	135.47	107.29	176.78	160.01	126.19	145.75	133.53	75.57
Merged-chr13-8842436-3	chr13	8841942	8842942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	28602.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	24.03	20.74	20.35	21.59	11.66	16.08	30.63	15.92	23.11
Merged-chrX-7319343-3	chrX	7318848	7319848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243762)	promoter-TSS (NM_001243762)	10.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	61.78	94.92	49.95	65.45	58.78	63.5	61.26	74.28	64.95
Merged-chr4-136035294-3	chr4	136034798	136035798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13649.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	47.48	54.37	29.6	62.75	52.25	53.85	32.74	42.01	25.61
Merged-chr8-70506609-3	chr8	70506113	70507113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151646)	promoter-TSS (NR_151646)	139.0	NM_001357209	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	104.69	71.88	75.85	113.35	74.17	124.59	91.89	57.48	61.2
Merged-chr7-132620180-3	chr7	132619669	132620669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	9526.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	66.93	53.45	65.67	79.62	65.31	75.56	101.39	67.65	64.95
Merged-chr1-181842033-2	chr1	181841537	181842537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133815, intron 1 of 13)	CpG	364.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	249.99	220.25	207.19	223.33	161.41	213.81	189.06	149.45	138.02
Merged-chr9-100415476-2	chr9	100414974	100415974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70999.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	9.15	6.45	7.4	8.1	4.67	8.04	1.06	4.42	1.25
Merged-chr11-57801541-3	chr11	57801039	57802039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	-72.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	18.88	18.89	22.2	28.34	21.46	50.64	25.35	13.71	12.49
Merged-chr1-177681393-3	chr1	177680901	177681901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38458.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	4.0	1.38	0.0	6.07	3.27	8.04	11.62	5.75	11.24
Merged-chr15-68258945-3	chr15	68258445	68259445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-89.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	262.57	264.49	247.89	271.91	298.1	232.29	235.53	258.67	148.01
Merged-chr6-87503054-3	chr6	87502541	87503541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-6714.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	173.9	101.37	93.42	180.82	110.56	119.76	124.63	132.21	86.81
Merged-chrX-42068179-3	chrX	42067669	42068669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125870)	promoter-TSS (NR_125870)	-229.0	NM_001301639	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	116.7	70.04	78.62	107.28	59.71	61.89	122.52	84.9	44.97
Merged-chr12-73584726-3	chr12	73584230	73585230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313977)	promoter-TSS (NM_001313977)	-66.0	NM_001313977	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	81.23	81.1	92.5	89.74	99.37	102.08	104.56	72.96	64.33
Merged-chr2-148522241-3	chr2	148521739	148522739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78704.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	96.68	99.07	55.5	113.35	88.64	118.96	105.62	95.95	54.96
Merged-chr13-46728045-3	chr13	46727524	46728524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175749)	promoter-TSS (NM_175749)	-175.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	437.05	342.36	296.91	320.49	287.37	267.66	261.93	248.94	194.23
Merged-chrUn_JH584304-59712-1	chrUn_JH584304	59212	60212	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003518)	promoter-TSS (NR_003518)	-23.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	1152.3	803.42	0.0
Merged-chr9-13701937-3	chr9	13701445	13702445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 2 of 3)	intron (NM_173776, intron 2 of 3)	39485.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	28.6	36.4	30.52	43.18	33.59	54.66	41.19	36.26	19.36
Merged-chr11-102407581-3	chr11	102407122	102408122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-105.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	304.33	290.75	251.59	379.19	309.76	253.19	350.65	403.7	160.5
Merged-chr4-148039000-3	chr4	148038492	148039492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010840)	promoter-TSS (NM_010840)	-85.0	NM_010840	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	123.56	136.39	137.82	127.52	164.21	105.3	157.37	172.45	93.68
Merged-chr2-165969023-3	chr2	165968530	165969530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23607.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	259.71	115.2	136.89	269.21	122.23	165.58	223.91	168.47	80.56
Merged-chr12-116262978-3	chr12	116262473	116263473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146039)	promoter-TSS (NM_146039)	52.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	7.44	7.83	4.62	14.84	9.8	9.65	5.28	8.4	8.74
Merged-chr7-43660157-3	chr7	43659657	43660657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	4.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	111.55	92.62	97.12	78.27	65.78	84.4	129.91	133.98	114.91
Merged-chr19-55570051-3	chr19	55569533	55570533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	132171.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	61.78	37.78	37.0	43.18	36.39	23.31	22.18	18.13	14.99
Merged-chr16-58477765-3	chr16	58477264	58478264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	RMER6C|LTR|ERVK	45662.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	81.23	70.04	33.3	112.68	56.91	99.67	141.53	130.44	70.57
Merged-chr13-54687272-3	chr13	54686779	54687779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	CpG	529.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	102.4	121.65	137.82	103.23	131.09	141.47	138.36	107.45	100.55
Merged-chr1-135753121-3	chr1	135752620	135753620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153810)	TTS (NR_153810)	-12965.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	13.73	11.98	5.55	12.82	5.13	4.82	5.28	7.07	8.74
Merged-chr8-91070735-3	chr8	91070231	91071231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011250, intron 1 of 21)	intron (NM_011250, intron 1 of 21)	674.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	269.44	352.04	191.47	238.85	310.69	253.19	258.77	291.39	191.11
Merged-chr4-35157476-3	chr4	35156968	35157968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	16.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	25.74	16.13	11.1	23.62	10.26	21.7	9.51	8.4	7.49
Merged-chr7-104244426-3	chr7	104243930	104244930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357679)	promoter-TSS (NM_001357679)	-27.0	NM_001357679	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	94.39	86.63	63.82	98.51	73.24	54.66	100.34	130.44	68.07
Merged-chr3-95632454-3	chr3	95631970	95632970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019561)	TTS (NM_019561)	7490.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	133.86	127.64	98.05	157.88	123.16	164.78	168.99	198.53	99.92
Merged-chr19-46573254-3	chr19	46572735	46573735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019718)	promoter-TSS (NM_019718)	-53.0	NM_019718	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	41.19	34.1	24.05	49.25	35.45	32.96	40.14	45.1	21.23
Merged-chr14-75024984-3	chr14	75024481	75025481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	8954.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	63.5	60.36	48.1	61.4	64.84	61.89	51.75	68.54	53.71
Merged-chr1-105663809-3	chr1	105663330	105664330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	-31.0	NM_173187	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	70.36	62.21	73.07	77.59	76.04	108.51	103.51	102.14	59.95
Merged-chr9-114640142-3	chr9	114639621	114640621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	79.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	151.02	170.03	110.99	103.91	125.49	57.07	127.8	158.74	87.43
Merged-chr12-32163852-3	chr12	32163330	32164330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44508.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	17.16	22.12	18.5	33.74	29.39	12.06	63.37	54.39	18.74
Merged-chr8-94434298-3	chr8	94433778	94434778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015514, exon 2 of 3)	non-coding (NR_015514, exon 2 of 3)	825.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	61.78	63.59	79.55	64.77	52.25	49.03	87.66	85.34	66.2
Merged-chr16-96127998-3	chr16	96127480	96128480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008251)	promoter-TSS (NM_008251)	-255.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	149.88	90.31	53.65	180.15	126.89	97.26	122.52	77.82	43.72
Merged-chr10-10429250-3	chr10	10428747	10429747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	43067.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	180.77	307.8	147.99	170.7	229.52	167.99	269.33	298.46	151.14
Merged-chr12-85524611-3	chr12	85524123	85525123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50733.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	177.91	115.2	83.25	255.04	190.8	151.92	173.21	141.49	71.2
Merged-chr2-19347471-3	chr2	19346961	19347961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126563, intron 1 of 3)	intron (NR_126563, intron 1 of 3)	3144.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	11.44	14.75	3.7	29.69	12.13	12.86	25.35	12.38	9.99
Merged-chr15-6522986-3	chr15	6522482	6523482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56865.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	80.66	87.09	54.57	94.46	44.78	75.56	105.62	60.58	41.84
Merged-chr5-43882286-3	chr5	43881792	43882792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	PB1D10|SINE|Alu	13483.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	138.44	138.24	59.2	105.26	69.51	61.89	111.96	137.07	54.33
Merged-chr17-74294433-1	chr17	74293933	74294933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133771, intron 1 of 8)	CpG	430.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	53.2	42.85	40.7	68.15	46.65	51.44	78.16	49.96	30.6
Merged-chr4-136120210-3	chr4	136119712	136120712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23610.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	25.17	11.98	10.17	51.95	40.12	17.68	26.4	21.22	14.99
Merged-chr8-70629941-3	chr8	70629441	70630441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	2154.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	330.65	166.34	108.22	176.1	128.29	126.19	198.56	183.94	91.81
Merged-chr8-26158125-3	chr8	26157616	26158616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199042)	promoter-TSS (NM_199042)	-53.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	188.78	170.03	198.87	186.22	187.54	204.16	189.06	147.68	120.53
Merged-chr8-77518064-3	chr8	77517512	77518512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030113)	promoter-TSS (NM_030113)	-105.0	NM_030113	78514.0	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	36.04	19.81	32.37	64.1	40.59	45.01	58.09	38.03	16.24
Merged-chr1-182409038-3	chr1	182408530	182409530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173378)	promoter-TSS (NM_173378)	-137.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	101.25	85.25	50.87	71.52	80.24	66.71	92.94	76.94	42.47
Merged-chr11-120491822-3	chr11	120491302	120492302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013770)	promoter-TSS (NM_013770)	-35.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	124.71	98.61	96.2	120.77	94.7	94.85	89.78	98.6	84.31
Merged-chr4-123904939-3	chr4	123904442	123905442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019660)	promoter-TSS (NM_019660)	-71.0	NM_019660	56309.0	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	96.68	82.48	66.6	98.51	73.71	69.13	88.72	59.69	58.71
Merged-chr19-34194590-3	chr19	34194091	34195091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	1657.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	45.76	56.22	44.4	47.9	32.19	40.19	91.89	95.51	43.09
Merged-chr9-104002531-3	chr9	104002032	104003032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172460)	promoter-TSS (NM_172460)	-12.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	55.49	57.6	61.05	58.03	45.25	69.93	48.58	47.31	31.85
Merged-chr13-96388257-3	chr13	96387780	96388780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-14.0	NM_026173	67463.0	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	67.5	58.98	18.5	49.93	59.71	36.17	74.99	66.33	29.35
Merged-chr11-110427350-3	chr11	110426857	110427857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	28255.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	136.72	116.12	64.75	151.14	118.49	153.52	171.1	201.63	106.79
Merged-chr5-30889030-3	chr5	30888509	30889509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	3.0	NM_001048192	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	27.46	31.79	26.82	44.53	27.52	38.58	26.4	29.18	24.36
Merged-chr11-108223354-3	chr11	108222881	108223881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	120507.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	280.88	265.41	177.59	280.68	221.59	237.92	275.66	291.83	148.64
Merged-chr15-53346194-3	chr15	53345708	53346708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010162)	promoter-TSS (NM_010162)	-25.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	97.25	100.91	124.87	71.52	75.11	106.1	67.6	60.13	73.69
Merged-chr7-114194469-3	chr7	114193974	114194974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	60206.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	38.9	38.71	56.42	62.75	50.38	42.6	97.17	101.7	41.22
Merged-chr11-49202806-3	chr11	49202289	49203289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-711.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	356.96	391.67	276.56	309.02	278.51	245.16	323.19	386.9	193.6
Merged-chr11-82566274-3	chr11	82565781	82566781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67072.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	101.83	158.51	139.67	77.59	92.37	124.59	114.07	160.51	123.66
Merged-chr15-58076658-3	chr15	58076169	58077169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-161.0	NM_009572	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	53.2	57.14	46.25	49.25	63.45	39.39	65.48	70.3	31.23
Merged-chr10-14207874-3	chr10	14207387	14208387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241508.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	32.04	38.71	23.12	37.11	25.19	18.49	21.12	19.01	14.36
Merged-chr5-86804186-3	chr5	86803700	86804700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347375)	promoter-TSS (NM_001347375)	-66.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	387.85	302.74	287.66	344.11	296.23	250.78	355.93	236.12	193.6
Merged-chr15-61999795-3	chr15	61999281	62000281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14440.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	81.23	73.73	58.27	105.93	60.65	69.93	63.37	46.43	48.09
Merged-chr15-101078882-3	chr15	101078343	101079343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24444.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	73.22	43.31	67.52	59.38	24.26	77.97	58.09	38.91	31.23
Merged-chr3-59312771-3	chr3	59312268	59313268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	31488.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	44.05	60.82	38.85	133.59	166.54	74.75	27.46	40.68	13.74
Merged-chr1-184033740-3	chr1	184033229	184034229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022019)	promoter-TSS (NM_022019)	269.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	465.08	438.21	373.68	414.95	376.01	376.17	373.89	402.81	216.71
Merged-chr8-34158396-3	chr8	34157910	34158910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	3847.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	113.27	145.61	85.1	122.8	102.17	53.85	130.97	152.99	89.93
Merged-chr5-63967752-3	chr5	63967265	63968265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	1132.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	127.0	112.89	55.5	132.92	90.97	107.71	144.7	156.09	78.07
Merged-chr8-126805982-3	chr8	126805456	126806456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43064.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	195.07	159.89	197.02	206.46	160.01	229.08	154.2	176.42	122.41
Merged-chr19-46152395-3	chr19	46151897	46152897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178930)	promoter-TSS (NM_178930)	-161.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	65.79	57.6	47.17	48.58	35.45	22.51	59.15	46.43	23.73
Merged-chr7-45526295-3	chr7	45525798	45526798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	-30.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	336.94	311.95	229.39	376.49	363.88	279.72	293.62	338.7	173.62
Merged-chr7-47050577-3	chr7	47050082	47051082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026436)	promoter-TSS (NM_026436)	-58.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	240.26	265.87	240.49	251.67	239.79	198.54	255.6	258.23	149.26
Merged-chr3-137950645-3	chr3	137950142	137951142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	30907.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	108.69	97.23	95.27	95.14	69.04	99.67	152.09	155.64	60.58
Merged-chr17-57342463-4	chr17	57341946	57342946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16240.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	128.71	118.42	107.29	125.5	65.31	94.04	159.48	167.14	126.78
Merged-chr9-124312643-3	chr9	124312144	124313144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243117)	promoter-TSS (NM_001243117)	50.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	188.78	262.65	184.07	180.82	208.53	176.83	229.19	233.46	134.9
Merged-chr16-31926795-3	chr16	31926307	31927307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-7044.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	162.46	107.82	56.42	114.7	80.24	52.25	104.56	139.72	58.08
Merged-chr9-85587317-3	chr9	85586839	85587839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161995.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	38.9	47.46	44.4	44.53	28.46	50.64	33.8	41.12	36.22
Merged-chr4-125055439-4	chr4	125054879	125055879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145552)	TTS (NM_145552)	10278.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	165.32	130.4	85.1	191.62	147.42	139.86	145.75	121.6	79.32
Merged-chr16-13903118-3	chr16	13902643	13903643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	2.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	241.41	240.99	196.09	185.55	181.94	202.55	239.75	237.0	137.4
Merged-chr2-5824872-3	chr2	5824363	5825363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356504, intron 3 of 6)	intron (NM_001356504, intron 3 of 6)	-20171.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	21.74	19.35	25.9	39.81	14.93	20.9	20.07	22.11	19.98
Merged-chr10-85353088-1	chr10	85352588	85353588	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-33726.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.72	0.92	5.55	2.7	3.73	0.0	94.0	110.98	39.97
Merged-chr2-122572674-3	chr2	122572169	122573169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38608.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	120.13	94.46	74.0	122.12	52.25	84.4	79.21	80.47	43.72
Merged-chr15-50820376-3	chr15	50819883	50820883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	68666.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	100.11	83.4	24.97	97.83	62.51	76.36	72.88	59.25	43.72
Merged-chr4-120951730-3	chr4	120951224	120952224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-23.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	221.38	234.08	191.47	203.09	199.2	167.19	191.17	215.78	129.9
Merged-chr10-95146764-3	chr10	95146266	95147266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131146)	promoter-TSS (NR_131146)	-941.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	31.46	23.5	17.57	24.96	23.79	24.92	26.4	21.67	10.62
Merged-chr9-110676813-3	chr9	110676307	110677307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	20304.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	163.04	137.77	142.44	144.39	77.91	116.55	142.59	155.64	81.19
Merged-chr4-3391903-2	chr4	3391401	3392401	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	-145189.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	2.29	2.3	1.85	20.24	20.53	20.09	29.57	45.54	22.48
Merged-chr19-53600083-3	chr19	53599659	53600659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007790)	promoter-TSS (NM_007790)	-237.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	229.39	168.65	109.14	179.47	145.55	127.8	165.82	141.49	91.18
Merged-chr1-134361979-3	chr1	134361478	134362478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020588)	promoter-TSS (NM_020588)	21.0	NM_020588	57439.0	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	179.05	135.01	121.17	156.53	114.76	115.75	153.15	124.69	84.31
Merged-chr16-91916777-3	chr16	91916284	91917284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010587, exon 39 of 39)	3' UTR (NM_010587, exon 39 of 39)	14846.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	33.18	26.73	20.35	47.23	20.53	37.78	38.02	37.14	19.98
Merged-chr2-156144217-3	chr2	156143719	156144719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164216)	promoter-TSS (NM_001164216)	-14.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	131.57	133.63	91.57	165.31	159.55	127.0	126.74	103.02	67.45
Merged-chr9-106437862-3	chr9	106437352	106438352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025371, intron 1 of 14)	intron (NM_025371, intron 1 of 14)	384.0	NM_001276442	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	52.63	42.85	32.37	53.3	30.32	56.27	49.64	40.68	37.47
Merged-chr7-80192482-3	chr7	80191987	80192987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	5646.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	81.23	82.94	106.37	116.73	90.5	152.72	126.74	108.77	88.68
Merged-chr11-23699915-3	chr11	23699404	23700404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	33928.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	25.74	33.18	46.25	18.89	14.46	24.92	52.81	35.82	35.6
Merged-chr10-52382140-3	chr10	52381646	52382646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-22.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	189.92	152.98	144.29	173.4	135.29	168.8	151.03	136.63	105.55
Merged-chr2-22781636-3	chr2	22781134	22782134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	L1_Mus4|LINE|L1	7307.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	37.18	37.78	37.92	45.88	33.12	51.44	48.58	41.12	44.34
Merged-chr2-167949390-3	chr2	167948892	167949892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	17065.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	121.85	98.61	69.37	161.26	96.1	130.21	83.44	79.15	78.07
Merged-chr1-184444370-3	chr1	184443824	184444824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113367.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	28.03	16.13	3.7	20.24	15.86	12.86	16.9	12.82	12.49
Merged-chr5-124032282-3	chr5	124031738	124032738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177876)	promoter-TSS (NM_177876)	22.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	308.91	233.62	228.46	295.53	221.59	254.8	285.17	245.4	136.77
Merged-chr7-16297020-3	chr7	16296528	16297528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10233.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	65.21	59.9	38.85	81.64	47.12	41.8	107.73	103.02	66.2
Merged-chr11-26805090-3	chr11	26804588	26805588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19980.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	15.45	12.44	12.02	3.37	7.93	11.25	8.45	8.84	5.0
Merged-chr2-119156980-3	chr2	119156486	119157486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033136)	promoter-TSS (NM_001033136)	48.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	157.31	156.21	153.54	152.49	125.02	91.63	159.48	170.23	79.94
Merged-chr16-95708837-3	chr16	95708347	95709347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	6440.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	315.77	279.24	173.89	333.31	342.42	232.29	243.98	275.47	144.89
Merged-chr15-31410204-2	chr15	31409701	31410701	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42442.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	8.01	2.76	5.55	26.31	31.72	35.37	12.67	17.24	11.24
Merged-chr15-5349096-3	chr15	5348603	5349603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104916.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	33.18	47.46	29.6	26.99	29.86	37.78	68.65	55.71	41.22
Merged-chr5-138754945-3	chr5	138754420	138755420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030565)	promoter-TSS (NM_030565)	-161.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	5.72	4.61	0.0	27.66	11.2	38.58	7.39	7.07	6.87
Merged-chr1-30949228-3	chr1	30948734	30949734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	CpG	476.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	507.41	500.87	388.48	510.09	543.95	391.44	452.05	394.86	282.91
Merged-chr4-47314133-3	chr4	47313644	47314644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009928)	TTS (NM_009928)	-39078.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	99.54	58.06	50.87	71.52	69.04	60.28	61.26	50.41	50.59
Merged-chr2-122611806-3	chr2	122611301	122612301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	-524.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	200.79	243.29	142.44	188.92	217.86	185.68	191.17	271.93	105.55
Merged-chr8-128694681-3	chr8	128694201	128695201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	MTC|LTR|ERVL-MaLR	9047.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	49.2	37.78	62.9	52.63	34.99	33.76	59.15	44.22	45.59
Merged-chrX-47918271-3	chrX	47917782	47918782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 3 of 23)	intron (NM_177215, intron 3 of 23)	5826.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	45.76	54.37	20.35	41.83	35.92	41.8	34.85	26.97	21.23
Merged-chr10-40276113-3	chr10	40275615	40276615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18403.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	12.01	11.52	11.1	14.17	15.39	8.84	16.9	11.05	13.74
Merged-chr6-83040760-3	chr6	83040251	83041251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	6527.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	65.21	64.97	75.85	93.79	66.71	75.56	145.75	149.89	79.94
Merged-chr6-84583573-3	chr6	84583066	84584066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177713, intron 3 of 6)	intron (NM_001177713, intron 3 of 6)	10244.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	11.44	12.44	9.25	18.22	9.8	12.86	16.9	6.63	6.25
Merged-chr8-26697480-1	chr8	26696980	26697980	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126943.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	62.93	52.07	43.47	47.23	27.99	45.01	92.94	91.09	44.97
Merged-chr10-77962848-3	chr10	77962327	77963327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 4 of 33)	L1MDa|LINE|L1	7045.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	168.18	106.9	95.27	138.99	69.51	92.44	155.26	144.59	54.33
Merged-chr8-61591169-3	chr8	61590664	61591664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293774)	promoter-TSS (NM_001293774)	5.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	84.09	82.48	66.6	72.19	84.9	81.99	61.26	66.33	48.71
Merged-chr11-102467246-3	chr11	102466747	102467747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010575, intron 4 of 29)	CpG	2636.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	9.72	8.75	7.4	12.82	7.46	12.86	19.01	9.73	6.87
Merged-chr7-128089343-3	chr7	128088826	128089826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 12 of 29)	L1M2|LINE|L1	26686.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	78.94	97.23	61.05	73.54	66.24	54.66	66.54	91.09	44.97
Merged-chr17-65768658-3	chr17	65768148	65769148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	4104.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	65.21	58.06	16.65	74.22	46.65	16.08	47.53	65.44	43.72
Merged-chr10-39960287-3	chr10	39959793	39960793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173500)	promoter-TSS (NM_001173500)	-140.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	145.3	191.69	110.99	136.97	134.35	140.66	142.59	164.93	109.92
Merged-chr13-88828500-3	chr13	88828010	88829010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037987, intron 1 of 10)	intron (NM_001037987, intron 1 of 10)	7038.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	32.04	24.88	5.55	8.1	8.4	6.43	14.79	14.15	7.49
Merged-chr6-87850524-3	chr6	87850008	87851008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355195, intron 1 of 4)	CpG	598.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	483.39	554.78	330.21	502.66	526.22	433.24	442.54	385.57	261.05
Merged-chr19-45075154-3	chr19	45074635	45075635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-106.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	196.79	234.08	178.52	166.66	179.14	188.89	205.96	195.88	146.14
Merged-chr10-80406780-3	chr10	80406269	80407269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025650)	promoter-TSS (NM_025650)	52.0	NM_025650	66594.0	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	66.36	58.52	57.35	58.03	62.51	84.4	88.72	82.24	64.33
Merged-chr1-163994792-3	chr1	163994292	163995292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201364)	promoter-TSS (NM_201364)	4.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	47.48	45.62	37.92	45.88	45.25	52.25	38.02	47.75	26.85
Merged-chr12-32008891-1	chr12	32008391	32009391	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	B1_Mur2|SINE|Alu	52388.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.0	0.92	2.77	4.05	2.33	3.22	19.01	11.94	17.49
Merged-chr15-41830865-3	chr15	41830365	41831365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130164)	promoter-TSS (NM_001130164)	-93.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	38.9	78.79	56.42	64.1	63.45	48.23	41.19	88.43	34.97
Merged-chr19-4397265-3	chr19	4396772	4397772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001984)	promoter-TSS (NM_001001984)	-195.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	326.64	259.88	247.89	319.14	246.78	209.79	260.88	240.1	165.5
Merged-chr9-64960846-3	chr9	64960350	64961350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175153)	promoter-TSS (NM_175153)	18.0	NM_001077631	69882.0	Mm.272616	NM_175153	ENSMUSG00000034263	Ints14	2010321M09Rik|Vwa9	integrator complex subunit 14	protein-coding	61.78	49.3	49.02	81.64	49.92	75.56	71.82	62.79	54.33
Merged-chrX-17572342-3	chrX	17571848	17572848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028058)	promoter-TSS (NM_028058)	-23.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	96.68	129.02	73.07	118.08	105.9	91.63	110.9	109.66	68.7
Merged-chr2-69723026-4	chr2	69722485	69723485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081086)	promoter-TSS (NM_001081086)	-103.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	389.0	453.87	387.56	332.64	350.81	319.91	349.6	393.97	224.21
Merged-chr6-136687647-2	chr6	136687148	136688148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25755.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	5.72	5.07	0.0	4.05	4.2	4.82	5.28	2.65	2.5
Merged-chr14-34768576-3	chr14	34768069	34769069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-51567.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	24.6	15.21	10.17	41.83	22.86	23.31	38.02	33.16	8.74
Merged-chr5-102046853-3	chr5	102046350	102047350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23071.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	92.67	53.45	61.97	108.63	65.78	69.93	106.67	91.53	61.2
Merged-chr13-119836671-3	chr13	119836162	119837162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6445.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	21.74	23.5	11.1	14.84	7.0	12.86	16.9	18.13	11.24
Merged-chr4-148583510-2	chr4	148583010	148584010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8003.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	44.62	53.91	30.52	47.23	41.05	44.21	2.11	2.65	6.25
Merged-chr3-59219533-3	chr3	59219023	59220023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357010, intron 3 of 3)	intron (NM_001357010, intron 3 of 3)	-8641.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	55.49	80.18	37.92	52.63	59.71	49.03	67.6	80.47	35.6
Merged-chr4-132959674-3	chr4	132959150	132960150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14445.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	280.31	226.25	186.84	247.62	195.93	189.69	228.14	241.87	116.79
Merged-chr6-47835668-3	chr6	47835156	47836156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027477)	promoter-TSS (NM_027477)	-5.0	NM_027477	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	108.69	91.24	75.85	65.45	82.11	89.22	65.48	54.39	41.84
Merged-chr2-78050789-1	chr2	78050289	78051289	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_108098)	promoter-TSS (NR_108098)	-388.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.0	2.3	5.55	4.72	3.27	6.43	2.11	1.77	5.0
Merged-chr9-55512261-3	chr9	55511765	55512765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145615)	promoter-TSS (NM_145615)	-22.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	182.49	169.57	123.94	240.2	254.71	145.49	208.07	186.59	63.7
Merged-chr1-131068378-3	chr1	131067873	131068873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	MTC|LTR|ERVL-MaLR	29470.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	112.12	75.11	74.0	39.13	36.85	32.15	61.26	72.52	63.08
Merged-chr5-33996588-1	chr5	33996088	33997088	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001001985, exon 1 of 3)	5' UTR (NM_001001985, exon 1 of 3)	604.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	2.29	1.38	1.85	16.19	13.53	19.29	3.17	2.65	0.0
Merged-chr11-87987602-3	chr11	87987119	87988119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026556)	promoter-TSS (NM_026556)	-86.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	147.59	106.44	181.29	110.65	86.77	116.55	140.47	80.47	68.07
Merged-chr8-4250776-3	chr8	4250272	4251272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195258, intron 5 of 6)	intron (NM_001195258, intron 5 of 6)	-2330.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	1.14	1.38	3.7	6.07	1.87	5.63	5.28	7.52	3.12
Merged-chr11-21034143-3	chr11	21033658	21034658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57166.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	208.8	167.26	121.17	203.76	139.02	133.43	191.17	204.28	118.04
Merged-chr4-43493431-3	chr4	43492931	43493931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	66.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	236.26	151.6	114.69	190.95	142.75	106.1	133.08	150.78	53.71
Merged-chr14-57890386-3	chr14	57889887	57890887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360097)	promoter-TSS (NM_001360097)	-51.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	182.49	146.53	138.74	172.05	151.62	110.12	172.16	123.81	104.3
Merged-chr11-3914290-3	chr11	3913773	3914773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	391.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	31.46	29.95	24.97	40.48	35.45	65.91	26.4	15.92	23.73
Merged-chr10-78149293-3	chr10	78148794	78149794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	20474.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	109.83	111.51	67.52	70.85	76.97	79.58	64.43	103.02	46.22
Merged-chr2-119288646-3	chr2	119288144	119289144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172269)	promoter-TSS (NM_172269)	-98.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	387.85	405.03	221.99	359.62	395.6	273.29	332.7	570.4	212.96
Merged-chr12-33125756-3	chr12	33125261	33126261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	MLT1J|LTR|ERVL-MaLR	21825.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	31.46	16.59	12.02	39.81	29.39	15.27	40.14	19.01	13.12
Merged-chr17-35919121-3	chr17	35918653	35919653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-119.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	256.28	325.31	127.64	257.74	284.1	125.39	235.53	269.72	114.91
Merged-chrX-77433616-3	chrX	77433123	77434123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-77604.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	22.31	9.22	7.4	15.52	7.46	8.04	21.12	23.43	8.12
Merged-chr18-80470039-3	chr18	80469541	80470541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-374.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	590.93	572.75	256.21	514.13	533.22	307.85	440.43	490.81	183.61
Merged-chr8-3392971-3	chr8	3392476	3393476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133962)	promoter-TSS (NM_133962)	-32.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	26.31	41.47	20.35	37.11	42.92	45.01	45.42	30.07	21.86
Merged-chr13-48976498-3	chr13	48975997	48976997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8385.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	36.61	19.35	1.85	27.66	13.53	10.45	27.46	21.67	5.62
Merged-chr5-16467306-3	chr5	16466812	16467812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-86183.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	54.35	98.61	42.55	73.54	97.97	61.89	96.11	114.08	66.2
Merged-chr2-129261331-3	chr2	129260820	129261820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35892.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	14.3	14.28	11.1	4.72	4.2	5.63	5.28	7.96	1.25
Merged-chr10-4080046-3	chr10	4079561	4080561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106986.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	98.39	103.22	66.6	136.97	140.89	138.25	72.88	75.17	58.08
Merged-chr15-89177793-3	chr15	89177297	89178297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2991.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	192.21	169.11	130.42	153.84	116.63	121.37	195.39	218.87	127.4
Merged-chr3-105801336-3	chr3	105800853	105801853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	28.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	193.93	162.2	166.49	178.8	153.01	150.31	210.18	164.93	110.54
Merged-chr10-80539199-3	chr10	80538699	80539699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026094)	promoter-TSS (NM_026094)	-75.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	6.29	6.91	1.85	4.05	5.13	3.22	11.62	3.1	10.62
Merged-chr17-84647862-3	chr17	84647354	84648354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172256, intron 10 of 12)	intron (NM_172256, intron 10 of 12)	21355.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	25.74	28.11	19.42	38.46	18.66	23.31	21.12	15.92	26.23
Merged-chr13-113379103-3	chr13	113378608	113379608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123736.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	18.31	5.99	13.87	74.89	58.78	40.19	46.47	48.2	35.6
Merged-chr11-96789202-3	chr11	96788731	96789731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007622)	promoter-TSS (NM_007622)	95.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	92.1	85.71	95.27	71.52	44.78	108.51	94.0	68.54	69.32
Merged-chr7-133124284-3	chr7	133123808	133124808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009980)	promoter-TSS (NM_009980)	-825.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	113.27	119.8	119.32	148.44	169.81	127.0	118.29	130.88	76.19
Merged-chr9-40760566-3	chr9	40760090	40761090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-40683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	86.95	129.94	81.4	104.58	87.24	100.47	27.46	18.57	28.73
Merged-chr15-84325948-3	chr15	84325396	84326396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	-223.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	79.52	51.61	52.72	120.1	78.37	65.91	116.18	95.95	24.98
Merged-chr1-153487710-3	chr1	153487205	153488205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007842)	promoter-TSS (NM_007842)	-45.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	100.11	114.74	115.62	85.01	98.43	115.75	108.79	118.94	95.55
Merged-chr6-136656442-3	chr6	136655945	136656945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	5448.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	40.04	41.47	60.12	25.64	17.73	17.68	86.61	63.67	44.97
Merged-chr14-79481126-4	chr14	79480614	79481614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007920)	promoter-TSS (NM_007920)	-80.0	NM_007920	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	282.02	217.03	254.36	272.59	195.93	237.12	299.96	208.26	149.26
Merged-chr11-62551648-3	chr11	62551133	62552133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313984)	promoter-TSS (NM_001313984)	-98.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	155.03	119.8	89.72	161.93	76.51	69.93	143.64	123.36	73.69
Merged-chr19-40963193-3	chr19	40962700	40963700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008528, intron 4 of 16)	intron (NM_008528, intron 4 of 16)	31335.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	17.16	11.52	7.4	21.59	12.6	7.23	11.62	9.29	8.74
Merged-chr13-52636393-3	chr13	52635920	52636920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 9 of 13)	intron (NM_011518, intron 9 of 13)	39538.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	89.81	71.42	37.0	80.29	66.71	59.48	83.44	76.05	49.34
Merged-chr9-106887215-3	chr9	106886722	106887722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-222.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	75.51	47.0	63.82	97.83	36.39	52.25	85.55	32.72	48.71
Merged-chr9-44881398-3	chr9	44880870	44881870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-96.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	36.61	35.94	61.05	39.81	32.19	63.5	65.48	26.53	38.1
Merged-chr6-113531604-3	chr6	113531080	113532080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175101)	promoter-TSS (NM_175101)	58.0	NM_175101	66087.0	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	118.99	145.61	94.35	112.68	157.21	109.32	163.71	177.75	86.18
Merged-chr1-128417009-2	chr1	128416513	128417513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145507, intron 1 of 3)	CpG	403.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	162.46	193.53	130.42	176.1	200.13	162.37	197.51	185.71	91.18
Merged-chr17-34282592-1	chr17	34282092	34283092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010378)	TTS (NM_010378)	5179.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	17.16	9.68	22.2	2.7	3.27	1.61	12.67	7.96	3.75
Merged-chr8-12672141-3	chr8	12671636	12672636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198031)	promoter-TSS (NM_198031)	-36.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	40.62	42.39	37.92	49.93	51.78	40.99	54.92	21.67	23.73
Merged-chr4-118366435-1	chr4	118365935	118366935	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198170, intron 65 of 71)	intron (NM_198170, intron 65 of 71)	6436.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	5.15	4.61	2.77	20.92	20.53	45.82	7.39	5.31	6.25
Merged-chrX-20617715-3	chrX	20617208	20618208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358624)	promoter-TSS (NM_001358624)	-89.0	NM_001358624	104130.0	Mm.30084	NM_019435	ENSMUSG00000031059	Ndufb11	CI-ESSS|D5Bwg0566e|D5Bwg0577e|NP15.6|Np15|p15.6	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	protein-coding	62.93	70.96	37.92	62.07	61.11	32.96	64.43	55.71	26.85
Merged-chr6-127109608-3	chr6	127109093	127110093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177003)	promoter-TSS (NM_177003)	-41.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	30.89	26.73	22.2	38.46	36.85	22.51	33.8	19.46	5.0
Merged-chr6-146675302-3	chr6	146674805	146675805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18087.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	88.1	82.02	29.6	137.64	109.63	95.65	74.99	95.07	38.1
Merged-chr3-65529469-3	chr3	65528911	65529911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027955)	promoter-TSS (NR_027955)	3.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	238.55	214.26	249.74	270.56	254.71	233.9	260.88	266.18	171.12
Merged-chr8-84977708-4	chr8	84977194	84978194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008416, exon 1 of 1)	exon (NM_008416, exon 1 of 1)	1054.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	320.92	307.8	189.62	362.32	337.29	258.02	272.5	317.03	173.62
Merged-chr12-111182080-3	chr12	111181584	111182584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 1 of 3)	intron (NR_130987, intron 1 of 3)	2407.0	NR_130987	78062.0	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	19.45	14.75	8.32	20.92	18.19	14.47	26.4	11.5	2.5
Merged-chr12-8547454-3	chr12	8546941	8547941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177802, intron 2 of 6)	intron (NM_177802, intron 2 of 6)	-7875.0	NM_001286385	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	14.3	20.74	11.1	17.54	12.13	10.45	7.39	10.61	8.74
Merged-chr17-24007650-3	chr17	24007177	24008177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9577.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	112.69	100.45	70.3	151.81	89.1	130.21	124.63	121.15	68.7
Merged-chr7-16254478-3	chr7	16253967	16254967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	4871.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	167.61	99.07	92.5	156.53	65.78	117.35	130.97	102.14	99.3
Merged-chr9-99090670-3	chr9	99090195	99091195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 6 of 23)	RSINE1|SINE|B4	49516.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	133.86	170.95	100.82	191.62	205.26	122.98	213.35	237.89	97.43
Merged-chr6-120473638-3	chr6	120473139	120474139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 3 of 12)	intron (NM_008359, intron 3 of 12)	10442.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	46.34	44.24	58.27	67.47	47.12	71.54	46.47	57.92	38.1
Merged-chr16-31938974-3	chr16	31938455	31939455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	MTE2b|LTR|ERVL-MaLR	5104.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	168.76	176.48	105.44	167.33	119.43	96.45	157.37	170.68	123.03
Merged-chr1-180256331-3	chr1	180255841	180256841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128605)	promoter-TSS (NM_001128605)	-41.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	120.13	107.36	100.82	124.82	117.09	120.57	136.25	120.71	85.56
Merged-chr10-80149535-3	chr10	80149019	80150019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	-163.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	255.14	222.1	139.67	257.07	234.65	185.68	191.17	272.37	131.15
Merged-chr3-15285095-3	chr3	15284660	15285660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47142.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	163.61	199.06	104.52	203.09	234.65	102.88	136.25	141.05	92.43
Merged-chr9-110732797-3	chr9	110732289	110733289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083936, intron 1 of 13)	GC_rich|Low_complexity|Low_complexity	9821.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	31.46	36.4	19.42	45.88	34.52	28.13	35.91	46.43	24.36
Merged-chr1-59684961-3	chr1	59684469	59685469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018868)	promoter-TSS (NM_018868)	-37.0	NM_018868	55989.0	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	104.11	97.23	107.29	64.1	85.84	95.65	119.35	111.87	60.58
Merged-chr17-84100798-3	chr17	84100292	84101292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22132.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	129.28	107.82	114.69	128.2	98.9	101.28	132.02	110.98	83.69
Merged-chr2-27311813-3	chr2	27311320	27312320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	MIR3|SINE|MIR	-64517.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	85.24	58.06	46.25	66.12	40.59	69.93	64.43	35.82	34.97
Merged-chr12-16591701-3	chr12	16591188	16592188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	-1918.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	16.02	27.65	16.65	10.12	12.6	4.82	8.45	5.31	6.25
Merged-chr4-140964846-3	chr4	140964352	140965352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	B4A|SINE|B4	3581.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	120.7	125.79	110.99	162.61	116.16	145.49	165.82	243.63	89.93
Merged-chr12-3856241-3	chr12	3855724	3856724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6020.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	120.13	125.79	150.77	151.81	150.68	178.44	201.73	202.95	82.44
Merged-chr4-63401813-3	chr4	63401316	63402316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1629.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	256.85	202.28	159.09	213.89	141.35	182.46	201.73	188.36	136.15
Merged-chr15-81400081-3	chr15	81399580	81400580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-58.0	NM_177310	321003.0	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	207.08	182.01	124.87	175.43	153.48	126.19	185.89	172.45	69.32
Merged-chr17-87984645-3	chr17	87984153	87985153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9603.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	78.94	83.86	39.77	100.53	76.51	90.83	92.94	97.72	76.19
Merged-chrX-60404869-3	chrX	60404369	60405369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001798)	promoter-TSS (NM_001001798)	-864.0	NM_001037863	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	152.17	128.1	86.95	112.68	107.3	95.65	87.66	118.94	83.06
Merged-chr18-4920529-3	chr18	4920021	4921021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	108035.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	34.9	22.12	33.3	45.21	39.19	71.54	22.18	12.82	28.1
Merged-chr1-171044702-3	chr1	171044255	171045255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14639.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	39.47	36.86	51.8	47.23	19.59	31.35	22.18	43.77	25.61
Merged-chr5-134582711-3	chr5	134582216	134583216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020022)	promoter-TSS (NM_020022)	26.0	NM_020022	19718.0	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	23.45	19.35	12.95	23.62	15.86	18.49	27.46	18.13	19.36
Merged-chr1-121462118-3	chr1	121461615	121462615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 9 of 23)	intron (NM_029955, intron 9 of 23)	31048.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	144.73	140.08	153.54	45.21	23.33	13.66	69.71	51.73	39.35
Merged-chr17-34341143-3	chr17	34340623	34341623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033978, exon 5 of 5)	3' UTR (NM_001033978, exon 5 of 5)	3522.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	42.33	25.34	15.72	18.89	8.4	12.06	16.9	22.11	10.62
Merged-chr1-57377620-3	chr1	57377156	57378156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	36.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	78.37	67.74	56.42	82.99	97.5	89.22	100.34	78.26	40.59
Merged-chr2-165332818-3	chr2	165332300	165333300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6321.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	93.82	60.36	96.2	66.8	50.85	109.32	80.27	69.42	71.2
Merged-chr9-124312244-1	chr9	124311744	124312744	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243117, intron 1 of 4)	intron (NM_001243117, intron 1 of 4)	450.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	219.1	345.13	227.54	232.1	279.44	213.0	280.95	296.69	150.51
Merged-chr5-113592020-3	chr5	113591524	113592524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41604.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	9.15	3.69	0.0	11.47	6.06	3.22	3.17	3.54	6.25
Merged-chr3-116638144-3	chr3	116637641	116638641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23554.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	56.63	94.0	63.82	78.27	55.98	86.81	103.51	98.6	81.19
Merged-chr10-81545303-3	chr10	81544791	81545791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-245.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	89.24	55.75	45.32	64.77	63.91	65.11	58.09	53.06	49.34
Merged-chrX-7899169-5	chrX	7898681	7899681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313693)	promoter-TSS (NM_001313693)	88.0	NM_001252529	54633.0	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	139.01	128.56	101.74	97.16	90.04	109.32	128.85	105.24	71.2
Merged-chr10-22306646-3	chr10	22306165	22307165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015465)	promoter-TSS (NR_015465)	-55.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	422.18	420.24	228.46	452.06	419.39	344.83	136.25	113.64	58.71
Merged-chr6-137735085-3	chr6	137734573	137735573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011499)	promoter-TSS (NM_011499)	-9.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	490.82	416.55	230.31	427.77	379.27	228.28	309.46	275.03	183.61
Merged-chr7-92561338-6	chr7	92560837	92561837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001162918, exon 1 of 8)	5' UTR (NM_001162918, exon 1 of 8)	188.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	155.03	174.18	146.14	163.28	172.14	125.39	162.65	184.83	92.43
Merged-chr2-128396158-3	chr2	128395638	128396638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33213.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	62.35	40.09	15.72	53.3	32.66	39.39	51.75	45.99	42.47
Merged-chr17-47395673-4	chr17	47395104	47396104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008189, exon 2 of 4)	exon (NM_008189, exon 2 of 4)	5002.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	61.78	76.49	72.15	66.12	49.92	60.28	123.57	129.55	68.07
Merged-chr10-3973112-3	chr10	3972616	3973616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	41.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	42.33	50.23	42.55	63.42	62.98	58.68	49.64	54.39	20.61
Merged-chrX-20962076-3	chrX	20961582	20962582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013840)	promoter-TSS (NM_013840)	-32.0	NR_027446	320742.0	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	152.74	137.77	92.5	107.28	111.96	90.83	108.79	129.55	59.33
Merged-chr16-30416076-3	chr16	30415561	30416561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27531.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	155.03	128.56	72.15	177.45	124.09	132.63	203.84	228.16	106.17
Merged-chr13-110541879-3	chr13	110541385	110542385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	146841.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	27.46	17.51	5.55	48.58	37.32	12.86	40.14	23.88	9.99
Merged-chr4-53714160-3	chr4	53713643	53714643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139309)	promoter-TSS (NM_139309)	-39.0	NM_139309	246179.0	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	20.59	21.2	20.35	33.06	24.26	19.29	32.74	15.03	22.48
Merged-chr12-102368251-3	chr12	102367744	102368744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	71569.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	156.17	139.16	135.04	199.04	202.46	244.35	223.91	212.24	103.67
Merged-chr4-155847391-3	chr4	155846832	155847832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010091)	promoter-TSS (NM_010091)	-70.0	NM_010091	13542.0	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	68.07	44.24	60.12	62.07	38.72	64.3	61.26	30.51	36.85
Merged-chr17-62649799-2	chr17	62649297	62650297	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	231520.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.58	4.15	3.7	6.75	5.6	0.0	8.45	3.98	7.49
Merged-chr7-122289072-3	chr7	122288550	122289550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008855)	promoter-TSS (NM_008855)	-75.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	43.48	35.94	39.77	79.62	32.19	35.37	40.14	21.22	16.86
Merged-chr11-6415810-3	chr11	6415327	6416327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008907)	promoter-TSS (NM_008907)	-43.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	275.16	202.28	244.19	278.66	164.21	158.35	221.8	169.35	167.37
Merged-chr8-79225775-3	chr8	79225287	79226287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026315, intron 2 of 5)	MTEa|LTR|ERVL-MaLR	22796.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	13.16	19.81	18.5	31.71	18.19	16.08	13.73	16.36	5.0
Merged-chr4-128666590-3	chr4	128666082	128667082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	11880.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	188.78	175.1	133.19	143.04	152.55	167.99	111.96	189.69	95.55
Merged-chr2-59177503-3	chr2	59176995	59177995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	16645.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	112.12	96.76	37.0	115.38	66.24	42.6	153.15	160.95	52.46
Merged-chr9-118706355-3	chr9	118705845	118706845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-5347.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	61.21	79.72	31.45	116.05	87.24	87.61	88.72	119.39	84.94
Merged-chr9-110709946-3	chr9	110709442	110710442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028312, exon 4 of 7)	exon (NM_028312, exon 4 of 7)	32668.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	68.65	53.45	52.72	62.07	35.92	58.68	78.16	76.94	56.21
Merged-chr17-74459206-3	chr17	74458709	74459709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033367)	promoter-TSS (NM_001033367)	-101.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	211.66	225.32	136.89	172.05	176.81	129.41	192.23	237.44	101.8
Merged-chr16-33756179-3	chr16	33755691	33756691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37846.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	213.38	186.16	104.52	304.3	291.57	169.6	242.92	321.01	119.28
Merged-chr6-82971252-3	chr6	82970784	82971784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	24362.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	66.93	51.61	51.8	91.76	92.84	67.52	63.37	56.16	21.23
Merged-chr9-32676755-3	chr9	32676250	32677250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	106.4	108.28	35.15	115.38	99.37	62.7	100.34	119.83	48.09
Merged-chr19-45998382-4	chr19	45997902	45998902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198296)	promoter-TSS (NM_198296)	86.0	NM_198296	71617.0	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	286.6	278.77	197.02	257.07	216.93	239.53	286.23	204.72	114.29
Merged-chr5-129715498-3	chr5	129715003	129716003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356954)	promoter-TSS (NM_001356954)	6.0	NM_001356959	66258.0	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	58.35	54.37	40.7	58.03	52.25	49.03	72.88	76.05	26.85
Merged-chr3-136684714-1	chr3	136684214	136685214	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	14648.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	2.29	5.99	1.85	8.77	6.06	8.04	0.0	3.1	6.25
Merged-chr18-12741802-1	chr18	12741302	12742302	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042419, intron 1 of 5)	intron (NM_001042419, intron 1 of 5)	447.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	105.26	120.26	110.99	109.98	93.3	94.04	123.57	143.7	89.31
Merged-chr17-48316130-3	chr17	48315640	48316640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177083)	promoter-TSS (NM_177083)	-22.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	41.76	46.08	43.47	78.94	54.58	71.54	77.1	72.96	38.1
Merged-chr7-30373706-3	chr7	30373220	30374220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10948.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	11.44	7.83	12.02	10.8	14.0	9.65	5.28	5.31	18.74
Merged-chr3-27584696-3	chr3	27584196	27585196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037275)	TTS (NR_037275)	299.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	32.04	32.72	35.15	56.68	31.72	36.17	48.58	42.45	27.48
Merged-chr2-167253684-3	chr2	167253174	167254174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13137.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	167.04	104.6	103.59	192.29	158.15	94.85	224.97	251.59	82.44
Merged-chr1-135517106-3	chr1	135516620	135517620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-62437.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	160.18	117.5	105.44	104.58	87.24	105.3	87.66	77.38	54.33
Merged-chr10-53616094-3	chr10	53615599	53616599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	14340.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	121.28	111.97	114.69	118.75	110.1	95.65	141.53	152.11	55.58
Merged-chr3-127572736-3	chr3	127572231	127573231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 7 of 25)	intron (NM_197997, intron 7 of 25)	19242.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	5.15	8.29	2.77	10.8	9.8	3.22	10.56	17.69	12.49
Merged-chr5-23433936-3	chr5	23433437	23434437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	416.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	659.58	684.26	540.17	637.61	645.18	424.4	623.15	685.36	372.84
Merged-chr1-156002556-3	chr1	156002071	156003071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29316.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	82.38	64.05	52.72	48.58	36.39	51.44	158.43	169.79	78.07
Merged-chr11-115075578-2	chr11	115075078	115076078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13539.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	72.08	37.32	27.75	51.95	27.06	32.96	7.39	6.19	7.49
Merged-chr2-165857718-3	chr2	165857250	165858250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	423.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	323.78	328.54	283.96	348.83	281.77	271.68	280.95	322.34	187.98
Merged-chr2-31974397-3	chr2	31973920	31974920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172268)	promoter-TSS (NM_172268)	-30.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	240.83	282.46	174.82	165.31	245.85	166.38	181.66	218.43	96.8
Merged-chr17-81580625-3	chr17	81580130	81581130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	157757.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	66.93	73.26	74.0	51.28	40.59	47.42	49.64	54.39	33.72
Merged-chr8-106168842-3	chr8	106168368	106169368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357382)	promoter-TSS (NM_001357382)	14.0	NM_178798	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	46.91	19.35	20.35	39.13	45.25	19.29	50.7	36.7	25.61
Merged-chr6-86487399-3	chr6	86486902	86487902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040292, intron 1 of 1)	intron (NR_040292, intron 1 of 1)	825.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	118.42	143.76	105.44	112.68	108.23	155.93	147.87	190.13	87.43
Merged-chr18-4353455-3	chr18	4352960	4353960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040328)	promoter-TSS (NR_040328)	-87.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	282.02	310.11	177.59	343.43	329.35	311.07	288.34	377.17	224.83
Merged-chr6-34177081-3	chr6	34176580	34177580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021435)	promoter-TSS (NM_021435)	-26.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	82.95	77.41	74.0	80.29	95.17	73.95	57.03	52.18	43.72
Merged-chr1-165751357-3	chr1	165750853	165751853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	13.16	12.9	11.1	16.87	10.26	16.08	26.4	15.03	11.87
Merged-chr9-48480637-3	chr9	48480125	48481125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357505)	promoter-TSS (NM_001357505)	-14.0	NM_001357503	104444.0	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	30.89	27.19	21.27	37.78	25.19	36.97	51.75	31.39	31.85
Merged-chr15-100421363-3	chr15	100420856	100421856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	1699.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	248.84	230.39	103.59	205.11	183.34	92.44	168.99	222.41	101.17
Merged-chr10-67690216-3	chr10	67689728	67690728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-118269.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	180.2	152.06	80.47	178.8	147.88	81.18	71.82	77.82	39.35
Merged-chr10-41883088-3	chr10	41882613	41883613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-4326.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	45.19	58.52	40.7	45.21	35.92	49.83	41.19	47.75	38.1
Merged-chr8-84986039-5	chr8	84985540	84986540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4555.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	492.54	388.9	257.14	478.37	305.56	266.86	360.16	369.65	187.98
Merged-chr6-17635682-3	chr6	17635194	17636194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	164.18	169.11	91.57	165.98	98.9	120.57	185.89	198.09	121.78
Merged-chr5-148511941-1	chr5	148511441	148512441	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011908, exon 2 of 5)	exon (NM_011908, exon 2 of 5)	39732.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	5.15	11.52	17.57	18.89	13.06	24.11	17.96	11.5	19.98
Merged-chr7-83892016-3	chr7	83891548	83892548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023403)	promoter-TSS (NM_023403)	48.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	61.21	64.97	78.62	61.4	51.78	77.16	78.16	71.63	58.08
Merged-chr6-129407108-2	chr6	129406602	129407602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1760.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	155.6	196.29	105.44	172.73	132.95	148.7	157.37	179.08	88.68
Merged-chr7-126695893-3	chr7	126695454	126696454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029420)	promoter-TSS (NM_029420)	-46.0	NM_175103	66162.0	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	36.04	19.81	39.77	45.21	28.46	51.44	36.97	33.16	34.35
Merged-chr5-31871019-3	chr5	31870517	31871517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	MTEa|LTR|ERVL-MaLR	172967.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	28.6	46.08	41.62	33.74	36.39	54.66	34.85	46.87	23.11
Merged-chr16-36627040-3	chr16	36626548	36627548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	39029.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	100.68	86.17	64.75	95.81	72.78	65.11	74.99	72.96	51.84
Merged-chr17-15695771-3	chr17	15695268	15696268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9199.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	22.31	15.67	5.55	29.01	13.53	16.08	14.79	12.82	9.99
Merged-chr7-120917670-3	chr7	120917164	120918164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025298)	promoter-TSS (NM_025298)	-80.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	102.97	82.94	65.67	103.23	80.24	87.61	123.57	67.21	46.22
Merged-chr12-28750451-3	chr12	28749937	28750937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178811)	promoter-TSS (NM_178811)	16.0	NM_001161411	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	179.62	238.23	147.07	157.88	220.19	155.93	255.6	271.05	108.67
Merged-chr7-35802927-3	chr7	35802417	35803417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177739)	promoter-TSS (NM_177739)	72.0	NM_177739	668501.0	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	25.17	18.89	11.1	16.87	14.46	9.65	60.2	20.78	5.0
Merged-chr16-45148754-3	chr16	45148284	45149284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 4 of 6)	intron (NM_028756, intron 4 of 6)	9889.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	46.34	59.44	25.9	49.93	33.59	53.05	33.8	38.91	27.48
Merged-chrUn_JH584304-34300-1	chrUn_JH584304	33800	34800	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25389.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	22.18	25.65	0.0
Merged-chr5-124480345-3	chr5	124479824	124480824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2089.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	276.87	237.3	184.07	239.52	178.21	133.43	242.92	300.23	101.8
Merged-chr4-128660314-3	chr4	128659820	128660820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	5618.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	92.67	80.64	52.72	86.36	77.44	95.65	59.15	67.65	34.97
Merged-chr5-110135756-3	chr5	110135253	110136253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289580)	promoter-TSS (NM_001289580)	-77.0	NM_172717	231600.0	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	38.33	43.31	37.0	35.76	37.79	56.27	41.19	43.77	36.22
Merged-chr17-35172655-3	chr17	35172150	35173150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361501, exon 3 of 8)	5' UTR (NM_001361501, exon 3 of 8)	3402.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	163.04	124.87	171.12	143.04	81.17	139.86	156.32	181.29	113.04
Merged-chr13-74390888-3	chr13	74390392	74391392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14326.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	25.74	43.77	25.9	38.46	34.06	36.97	32.74	36.26	21.23
Merged-chr15-99260121-3	chr15	99259641	99260641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-8180.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	20.02	13.82	24.97	20.92	8.4	23.31	15.84	23.43	14.99
Merged-chr8-125359703-2	chr8	125359201	125360201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133132.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.86	9.22	3.7	6.07	4.2	8.04	6.34	1.77	0.0
Merged-chr15-79892346-3	chr15	79891847	79892847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-61.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	78.94	100.91	74.92	74.22	71.38	89.22	163.71	203.84	114.91
Merged-chr11-84513559-3	chr11	84513041	84514041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019816)	promoter-TSS (NM_019816)	-40.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	102.97	100.91	79.55	112.68	161.88	114.14	115.12	107.89	53.08
Merged-chr5-115327104-3	chr5	115326620	115327620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-57.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	127.57	100.91	120.24	131.57	71.84	128.61	95.06	72.52	81.19
Merged-chr5-64680224-3	chr5	64679736	64680736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69537.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	76.66	68.2	70.3	58.7	30.79	74.75	69.71	68.09	62.45
Merged-chr7-30184096-3	chr7	30183588	30184588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009944)	promoter-TSS (NM_009944)	-83.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	101.83	88.47	49.02	127.52	69.51	71.54	155.26	107.89	36.85
Merged-chr5-34531844-3	chr5	34531345	34532345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	6061.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	53.2	76.49	84.17	73.54	40.59	80.38	65.48	72.07	67.45
Merged-chr3-133583834-3	chr3	133583342	133584342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39452.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	92.67	107.82	61.97	99.18	69.98	51.44	95.06	128.23	61.83
Merged-chr18-58659445-3	chr18	58658970	58659970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025478)	promoter-TSS (NM_025478)	-12.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	98.39	114.27	128.57	105.26	108.7	102.08	86.61	72.96	55.58
Merged-chrX-13071967-3	chrX	13071465	13072465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009481, intron 1 of 44)	CpG	467.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	237.4	226.25	206.26	223.33	190.34	148.7	181.66	180.4	174.87
Merged-chr9-7846932-3	chr9	7846440	7847440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9883.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	28.6	31.79	34.22	23.62	15.39	26.53	48.58	25.2	25.61
Merged-chr16-87495927-3	chr16	87495443	87496443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009840)	promoter-TSS (NM_009840)	-74.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	152.17	132.71	153.54	185.55	166.08	201.75	179.55	156.97	113.04
Merged-chr13-21402649-3	chr13	21402144	21403144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145778, intron 1 of 5)	CpG	111.0	NM_001145778	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	185.92	185.7	176.67	133.59	184.27	151.92	174.27	126.9	111.17
Merged-chr17-78373404-3	chr17	78372912	78373912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44740.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	58.92	54.83	44.4	70.85	37.79	73.95	59.15	52.18	31.23
Merged-chr14-20294647-3	chr14	20294127	20295127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359868)	promoter-TSS (NM_001359868)	-63.0	NM_001359870	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	28.6	38.25	42.55	31.04	34.52	31.35	39.08	52.18	38.1
Merged-chr10-87842326-3	chr10	87841812	87842812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15953.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	126.42	128.1	87.87	188.25	131.09	121.37	199.62	164.49	92.43
Merged-chr10-3973813-3	chr10	3973307	3974307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 1 of 27)	CpG	732.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	52.06	48.84	35.15	79.62	73.71	61.09	44.36	53.5	11.87
Merged-chr10-91182148-1	chr10	91181648	91182648	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-10529.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	172.76	192.61	100.82	145.74	113.36	117.35	185.89	194.55	130.53
Merged-chr10-80165162-3	chr10	80164649	80165649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2690.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	27.46	11.52	3.7	25.64	12.6	14.47	10.56	12.38	5.0
Merged-chr6-71831781-3	chr6	71831265	71832265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362138, intron 1 of 13)	CpG	445.0	NM_001253686	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	219.1	188.92	173.89	211.19	190.8	195.32	183.78	187.04	119.28
Merged-chr6-52640329-3	chr6	52639779	52640779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145567)	promoter-TSS (NM_145567)	21.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	46.91	42.85	61.97	47.23	47.58	32.15	63.37	56.6	33.1
Merged-chr1-55053230-3	chr1	55052738	55053738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026424, intron 1 of 3)	CpG	468.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	339.8	323.93	243.26	369.75	322.82	178.44	332.7	324.99	151.76
Merged-chr13-4663036-3	chr13	4662560	4663560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53896.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	60.07	76.49	22.2	82.32	73.24	71.54	45.42	45.54	52.46
Merged-chr7-3898254-3	chr7	3897743	3898743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289428)	promoter-TSS (NM_001289428)	-93.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	24.03	29.49	20.35	40.48	32.19	35.37	11.62	10.17	8.74
Merged-chr4-8536181-3	chr4	8535680	8536680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	CpG	536.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	236.26	301.81	280.26	279.33	264.98	241.94	293.62	210.47	188.61
Merged-chr6-56797041-3	chr6	56796543	56797543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362209, exon 1 of 4)	5' UTR (NM_001362209, exon 1 of 4)	170.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	157.89	186.16	146.14	267.19	218.33	192.11	229.19	168.47	136.15
Merged-chr16-20382171-3	chr16	20381681	20382681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 12 of 29)	intron (NM_013790, intron 12 of 29)	44213.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	31.46	23.96	10.17	31.04	17.73	9.65	47.53	27.86	18.74
Merged-chr14-30825612-3	chr14	30825105	30826105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028839)	promoter-TSS (NM_028839)	11.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	72.08	70.96	64.75	55.33	34.06	65.11	66.54	42.01	38.1
Merged-chr1-143918569-3	chr1	143918073	143919073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85576.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	111.55	144.23	110.07	115.38	100.77	89.22	130.97	124.69	61.83
Merged-chr2-60021772-3	chr2	60021282	60022282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	103958.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	25.17	26.73	24.97	33.74	23.33	28.13	30.63	23.88	9.37
Merged-chr13-103900187-3	chr13	103899698	103900698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	B4A|SINE|B4	20388.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	15.45	17.51	6.47	26.31	24.72	16.08	21.12	28.3	10.62
Merged-chr12-17658592-3	chr12	17658104	17659104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32205.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	101.25	138.7	127.64	86.36	70.44	89.22	158.43	149.89	94.93
Merged-chr6-31079814-3	chr6	31079314	31080314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16721.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	147.02	91.7	107.29	171.38	131.56	140.66	145.75	122.92	68.07
Merged-chr3-51559819-3	chr3	51559353	51560353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033624)	promoter-TSS (NR_033624)	96.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	166.47	200.44	174.82	92.44	172.14	131.82	158.43	163.16	74.32
Merged-chr10-7662700-2	chr10	7662213	7663213	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-658.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	114.98	93.08	84.17	98.51	75.11	92.44	106.67	88.43	56.83
Merged-chr11-53820863-2	chr11	53820358	53821358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	38398.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	24.03	16.13	20.35	2.7	3.27	6.43	13.73	11.5	6.25
Merged-chr6-134049146-3	chr6	134048640	134049640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	13440.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	30.89	16.59	48.1	19.57	10.73	20.09	21.12	21.22	18.74
Merged-chr19-10294708-3	chr19	10294236	10295236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	10141.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	92.1	99.53	114.69	129.55	77.91	112.53	88.72	114.52	61.2
Merged-chr3-123508469-3	chr3	123507973	123508973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028574)	promoter-TSS (NR_028574)	-137.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	225.96	230.85	217.36	202.42	207.6	203.36	216.52	200.3	163.63
Merged-chr7-131371180-3	chr7	131370688	131371688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039534)	promoter-TSS (NM_001039534)	42.0	NM_001039534	214580.0	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	32.04	33.64	37.92	32.39	41.99	48.23	43.3	34.49	28.1
Merged-chr7-31208365-3	chr7	31207873	31208873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46015.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	83.52	87.09	55.5	74.22	78.37	80.38	57.03	45.1	32.48
Merged-chr5-66106623-3	chr5	66106179	66107179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-8500.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	194.5	178.78	107.29	198.37	148.82	172.01	191.17	211.8	158.01
Merged-chr19-8713808-8	chr19	8713281	8714281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008577, exon 1 of 9)	5' UTR (NM_008577, exon 1 of 9)	116.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	280.88	230.39	195.17	226.03	215.53	222.65	213.35	253.36	163.0
Merged-chr10-111074072-3	chr10	111073569	111074569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64003.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	10.3	12.44	2.77	10.8	7.93	15.27	4.22	8.84	9.99
Merged-chr19-8983498-3	chr19	8982985	8983985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5799.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	54.92	47.0	12.95	66.8	36.39	54.66	28.52	32.28	33.1
Merged-chr11-51635833-3	chr11	51635324	51636324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	72.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	146.45	134.55	74.0	158.56	152.08	86.81	140.47	139.28	51.84
Merged-chr9-118868923-3	chr9	118868407	118869407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-57629.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	61.21	62.67	49.95	76.24	76.51	51.44	49.64	66.77	38.72
Merged-chr7-25708181-2	chr7	25707679	25708679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10874.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	125.85	132.71	124.87	112.68	130.16	166.38	141.53	120.71	66.2
Merged-chr13-112530043-3	chr13	112529546	112530546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139299, intron 14 of 16)	intron (NM_139299, intron 14 of 16)	50616.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	22.31	33.18	23.12	31.04	33.12	43.4	69.71	56.16	24.98
Merged-chr4-150855054-3	chr4	150854545	150855545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	-25.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	195.64	107.36	192.39	159.91	79.77	135.84	143.64	91.53	101.8
Merged-chr13-113636109-3	chr13	113635619	113636619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17555.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	115.55	96.76	74.92	112.0	104.03	66.71	79.21	104.79	43.09
Merged-chr5-99203632-3	chr5	99203124	99204124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49303.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	36.61	55.29	31.45	49.25	55.98	44.21	45.42	43.33	37.47
Merged-chr11-100939550-3	chr11	100939022	100940022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011486)	promoter-TSS (NM_011486)	18.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	423.89	421.62	302.46	389.99	390.93	234.71	326.36	451.89	228.58
Merged-chr6-128764277-3	chr6	128763768	128764768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24373.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	38.9	24.42	27.75	28.34	22.86	20.09	22.18	26.97	13.12
Merged-chr18-73812759-3	chr18	73812250	73813250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	B4A|SINE|B4	2642.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	68.07	65.43	65.67	90.41	78.37	78.77	100.34	92.86	36.22
Merged-chr17-6430104-3	chr17	6429608	6430608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009342)	promoter-TSS (NM_009342)	-4.0	NM_009342	21648.0	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	43.48	64.97	43.47	97.83	85.84	80.38	33.8	54.83	59.95
Merged-chr5-65764520-3	chr5	65764025	65765025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	CpG	1004.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	276.3	223.94	224.76	220.63	196.87	192.91	164.76	137.96	99.3
Merged-chr5-64619992-3	chr5	64619493	64620493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9294.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	15.45	6.91	13.87	14.84	8.4	12.86	17.96	22.11	11.87
Merged-chr5-29378439-3	chr5	29377926	29378926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020295)	promoter-TSS (NM_020295)	-36.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	114.41	109.21	85.1	109.98	123.62	100.47	95.06	87.11	43.72
Merged-chr12-75721157-3	chr12	75720657	75721657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 2 of 2)	intron (NM_030750, intron 2 of 2)	14572.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	140.73	92.16	47.17	199.72	197.33	92.44	76.05	69.86	22.48
Merged-chr9-72491940-3	chr9	72491432	72492432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009359)	promoter-TSS (NM_009359)	27.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	2.86	2.3	3.7	6.07	5.6	13.66	7.39	8.4	5.0
Merged-chr18-88845719-2	chr18	88845226	88846226	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48481.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	1.14	3.69	7.4	2.02	2.8	3.22	3.17	2.65	8.74
Merged-chr4-118620732-3	chr4	118620199	118621199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026789)	promoter-TSS (NM_026789)	-100.0	NM_026932	69072.0	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	21.74	28.11	12.95	21.59	25.66	36.97	40.14	18.13	22.48
Merged-chr7-44496448-3	chr7	44495913	44496913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028169)	promoter-TSS (NM_028169)	100.0	NM_197991	69683.0	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	107.55	95.38	70.3	88.39	81.17	102.88	74.99	73.84	41.84
Merged-chr18-82534589-3	chr18	82534091	82535091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-19872.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	29.17	41.01	22.2	11.47	11.2	8.84	1.06	6.63	6.87
Merged-chr9-108341991-3	chr9	108341480	108342480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2900.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	316.35	378.76	221.06	338.03	243.98	206.57	368.61	419.17	229.2
Merged-chr1-33883560-3	chr1	33883066	33884066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177235, exon 2 of 7)	5' UTR (NM_177235, exon 2 of 7)	24055.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	172.76	201.36	110.07	147.76	149.28	114.94	136.25	125.13	74.94
Merged-chr11-118248684-3	chr11	118248188	118249188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112699)	promoter-TSS (NM_001112699)	-96.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	238.55	165.42	135.04	284.73	187.54	163.17	217.57	244.08	89.93
Merged-chr17-55752585-3	chr17	55752073	55753073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	2589.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	102.97	144.23	74.0	137.64	96.1	123.78	92.94	108.33	86.18
Merged-chr2-132253297-3	chr2	132252787	132253787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-107.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	252.85	187.08	102.67	215.23	211.33	133.43	189.06	202.07	71.82
Merged-chr6-149193738-3	chr6	149193219	149194219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-5007.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	100.11	91.24	77.7	82.99	48.98	77.97	90.83	113.64	83.69
Merged-chr7-92878826-3	chr7	92878379	92879379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	3626.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	172.19	204.13	108.22	139.67	136.22	122.98	162.65	205.17	114.29
Merged-chr16-10991182-3	chr16	10990686	10991686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1935.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	177.34	199.52	128.57	184.2	132.02	163.17	201.73	230.37	124.28
Merged-chr16-11456469-3	chr16	11455961	11456961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50813.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	325.5	391.67	203.49	374.47	343.35	323.12	299.96	397.07	182.36
Merged-chr15-76925637-3	chr15	76925103	76926103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172817)	promoter-TSS (NM_172817)	-155.0	NM_001168276	239546.0	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	18.88	26.26	12.02	46.56	34.06	24.92	15.84	20.34	8.74
Merged-chr4-11480184-3	chr4	11479682	11480682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5776.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	15.45	14.75	29.6	10.8	11.2	20.09	22.18	20.34	14.36
Merged-chr1-143777725-2	chr1	143777222	143778222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	444.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	311.77	239.61	203.49	346.13	377.87	222.65	324.25	319.69	135.52
Merged-chr6-136828348-3	chr6	136827868	136828868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178776)	promoter-TSS (NM_178776)	-152.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	423.32	487.97	234.94	371.09	471.64	271.68	348.54	441.28	199.85
Merged-chr1-157016778-3	chr1	157016278	157017278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-77152.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	42.9	52.99	45.32	90.41	55.05	86.01	31.69	35.37	39.35
Merged-chr10-37261287-3	chr10	37260788	37261788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122362.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	63.5	50.69	50.87	60.72	48.52	53.85	45.42	54.83	43.09
Merged-chr14-70057126-3	chr14	70056625	70057625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-20320.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	300.33	219.33	190.54	265.16	186.14	134.23	291.51	287.85	147.39
Merged-chr7-111122273-3	chr7	111121763	111122763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015573, intron 1 of 2)	CpG	412.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	131.0	127.64	78.62	128.2	123.62	105.3	120.41	137.96	73.07
Merged-chr5-147059514-3	chr5	147059013	147060013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	17059.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	262.0	221.64	134.12	216.58	147.88	134.23	30.63	15.92	29.98
Merged-chr6-57691640-2	chr6	57691091	57692091	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025574, intron 1 of 1)	intron (NM_025574, intron 1 of 1)	487.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	58.35	41.93	55.5	82.32	66.71	73.14	88.72	61.9	23.11
Merged-chr2-32288199-3	chr2	32287696	32288696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133852)	promoter-TSS (NM_133852)	-57.0	NM_133852	99412.0	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	198.5	153.9	158.17	201.07	119.43	159.95	218.63	170.68	71.82
Merged-chr1-74788013-3	chr1	74787519	74788519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4000.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	6.86	1.84	7.4	5.4	0.47	4.02	2.11	0.88	1.25
Merged-chr11-4218166-3	chr11	4217665	4218665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028022)	promoter-TSS (NM_028022)	-86.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	6.86	3.23	5.55	5.4	4.67	4.82	7.39	4.86	1.87
Merged-chr16-44962986-3	chr16	44962479	44963479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027578, intron 4 of 4)	MIR3|SINE|MIR	19301.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	68.65	52.99	86.95	56.0	45.25	82.79	63.37	60.13	49.96
Merged-chr5-115484433-3	chr5	115483916	115484916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167691)	promoter-TSS (NM_001167691)	68.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	74.37	118.42	98.05	107.95	85.84	108.51	102.45	133.98	83.69
Merged-chr10-44702284-3	chr10	44701777	44702777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-243529.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	53.77	55.29	46.25	48.58	55.51	60.28	64.43	74.28	39.97
Merged-chr4-16163871-3	chr4	16163353	16164353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329751)	promoter-TSS (NM_001329751)	-210.0	NR_138102	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	89.24	67.74	81.4	94.46	38.25	98.87	87.66	76.94	51.84
Merged-chr13-37994205-3	chr13	37993729	37994729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025965)	promoter-TSS (NM_025965)	-21.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	242.55	185.24	147.99	230.08	163.28	158.35	230.25	145.03	93.05
Merged-chr11-70720757-3	chr11	70720263	70721263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153103, intron 18 of 22)	intron (NM_153103, intron 18 of 22)	14773.0	NR_105890	102465557.0		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	98.97	82.48	62.9	118.75	82.57	70.73	118.29	121.6	48.09
Merged-chr14-30694956-3	chr14	30694408	30695408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19941.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	49.77	31.33	34.22	66.12	36.85	45.01	29.57	23.88	23.11
Merged-chr3-60501296-3	chr3	60500812	60501812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001253710, exon 1 of 8)	5' UTR (NM_001253710, exon 1 of 8)	133.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	201.36	165.42	203.49	186.22	141.82	188.89	188.0	134.86	138.02
Merged-chr18-61489346-3	chr18	61488842	61489842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102c|DNA|hAT-Charlie	-4735.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	96.68	56.22	43.47	114.7	70.44	84.4	97.17	71.19	44.34
Merged-chr12-80326160-3	chr12	80325658	80326658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65519.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	122.42	123.49	116.54	163.28	123.16	102.08	175.33	222.41	74.94
Merged-chr8-88651383-3	chr8	88650873	88651873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	MTB|LTR|ERVL-MaLR	4026.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	109.83	91.24	108.22	108.63	75.57	136.64	88.72	84.9	88.06
Merged-chr11-105126398-3	chr11	105125900	105126900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172567)	promoter-TSS (NM_172567)	-25.0	NM_172567	52686.0	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	46.91	29.03	35.15	41.83	27.99	33.76	48.58	31.84	19.36
Merged-chr12-24651853-3	chr12	24651356	24652356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178357, intron 1 of 3)	CpG	485.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	212.8	198.14	193.32	217.26	216.93	190.5	201.73	152.11	117.41
Merged-chr2-11192943-3	chr2	11192426	11193426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20544.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	263.72	292.14	116.54	195.67	204.33	191.3	248.2	338.26	122.41
Merged-chr15-101254102-3	chr15	101253598	101254598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12748.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	233.97	159.43	75.85	251.67	142.75	153.52	302.07	321.9	163.0
Merged-chr10-118879205-3	chr10	118878720	118879720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-10317.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	68.65	51.15	31.45	80.97	42.92	40.19	67.6	38.91	38.72
Merged-chr4-53217740-3	chr4	53217245	53218245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28451.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	185.92	116.12	87.87	209.84	126.89	147.9	145.75	124.69	68.07
Merged-chr2-60810803-3	chr2	60810301	60811301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	70637.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	49.2	47.92	54.57	56.0	41.99	69.93	63.37	56.6	32.48
Merged-chr4-28812957-3	chr4	28812461	28813461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122889)	promoter-TSS (NM_001122889)	-170.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	3.43	1.38	3.7	2.02	1.87	1.61	6.34	3.54	1.87
Merged-chr6-97457381-3	chr6	97456881	97457881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1905.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	333.51	317.94	209.96	391.34	298.57	228.28	293.62	396.18	173.62
Merged-chr18-34856392-3	chr18	34855891	34856891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4816.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	189.35	154.82	121.17	219.96	140.89	143.88	257.71	260.88	99.92
Merged-chr3-59153584-3	chr3	59153082	59154082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287119)	promoter-TSS (NM_001287119)	46.0	NR_045641	320463.0	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	68.65	58.06	55.5	43.86	34.52	54.66	52.81	50.85	44.34
Merged-chr17-35202071-3	chr17	35201576	35202576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-69.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	171.62	81.56	109.14	134.27	47.58	66.71	111.96	85.34	76.82
Merged-chr14-31436143-3	chr14	31435633	31436633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011894)	promoter-TSS (NM_011894)	-33.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	208.23	154.82	132.27	163.28	129.69	155.93	188.0	160.06	119.91
Merged-chrX-163827755-3	chrX	163827261	163828261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-66429.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	5.72	9.22	9.25	13.49	16.79	14.47	10.56	7.96	8.12
Merged-chr6-48593826-3	chr6	48593344	48594344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079901)	promoter-TSS (NM_001079901)	-39.0	NM_001079905	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	54.35	54.83	39.77	68.82	61.58	38.58	71.82	61.46	34.97
Merged-chr4-144891422-3	chr4	144890922	144891922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-1405.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	92.67	102.75	75.85	122.12	122.69	133.43	110.9	142.38	66.82
Merged-chr4-134853411-3	chr4	134852890	134853890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-45.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	429.04	380.61	237.71	331.29	331.22	229.08	299.96	325.44	160.5
Merged-chr9-69993167-3	chr9	69992646	69993646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	3680.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	62.93	70.96	57.35	49.25	47.12	45.82	62.31	59.69	37.47
Merged-chr12-108894230-3	chr12	108893743	108894743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-29.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	125.85	107.36	81.4	99.18	89.57	79.58	138.36	89.76	50.59
Merged-chr7-35333983-3	chr7	35333487	35334487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027897)	promoter-TSS (NM_027897)	-250.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	6.86	2.76	1.85	8.1	1.4	4.02	3.17	1.77	6.87
Merged-chr4-41314406-3	chr4	41313918	41314918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 1 of 8)	CpG	483.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	233.97	267.72	215.51	209.84	207.13	210.59	213.35	229.93	203.6
Merged-chr6-72390171-3	chr6	72389660	72390660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	507.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	456.5	463.09	384.78	408.88	408.19	385.82	445.71	445.26	277.91
Merged-chr7-27473519-5	chr7	27473004	27474004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-336.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	108.69	111.05	136.89	103.23	80.24	93.24	125.69	142.38	92.43
Merged-chr15-83009182-3	chr15	83008692	83009692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13946.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	105.83	90.31	33.3	136.97	90.97	128.61	140.47	103.91	81.81
Merged-chr6-135168183-3	chr6	135167685	135168685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013546)	promoter-TSS (NM_013546)	30.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	150.45	186.62	144.29	237.5	240.72	163.17	243.98	263.53	83.06
Merged-chr16-91012038-3	chr16	91011540	91012540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164483)	promoter-TSS (NM_001164483)	-732.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	572.05	524.83	340.38	516.16	464.64	276.5	403.46	510.26	247.94
Merged-chr7-104465265-3	chr7	104464785	104465785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-92.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	156.74	157.13	101.74	179.47	138.55	120.57	180.61	181.73	101.17
Merged-chr2-127133950-3	chr2	127133436	127134436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144818)	promoter-TSS (NM_144818)	18.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	97.25	108.75	109.14	87.71	78.84	102.88	111.96	89.32	87.43
Merged-chr9-78631972-1	chr9	78631472	78632472	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	16426.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	6.29	12.9	11.1	12.14	6.53	8.04	2.11	6.19	1.25
Merged-chr19-43885297-3	chr19	43884822	43885822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-5554.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	49.77	29.95	11.1	48.58	27.52	31.35	36.97	22.99	6.25
Merged-chr17-47250151-3	chr17	47249659	47250659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	19929.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	81.23	82.48	43.47	68.15	47.12	36.17	34.85	47.75	43.09
Merged-chr19-12439755-3	chr19	12439239	12440239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	11834.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	226.53	207.81	123.02	226.71	188.94	182.46	242.92	280.33	131.78
Merged-chr1-15805591-3	chr1	15805097	15806097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152944)	promoter-TSS (NR_152944)	-49.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	151.02	194.45	133.19	151.14	184.27	136.64	137.3	142.82	86.81
Merged-chr16-49858694-3	chr16	49858199	49859199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	3045.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	209.94	195.37	130.42	217.26	187.07	146.29	215.46	267.95	117.41
Merged-chr8-84975632-3	chr8	84975152	84976152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011563)	TTS (NM_011563)	3096.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	315.77	282.92	189.62	254.37	212.26	213.0	248.2	321.9	149.26
Merged-chr1-135735473-3	chr1	135734961	135735961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	6294.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	63.5	40.55	42.55	43.18	30.32	29.74	83.44	61.9	26.23
Merged-chr11-121734410-3	chr11	121733901	121734901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31974.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	70.93	81.56	61.05	89.74	77.44	95.65	126.74	160.95	76.82
Merged-chr4-142089048-3	chr4	142088541	142089541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027137)	TTS (NR_027137)	-4737.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	45.19	27.65	24.97	36.43	27.99	36.97	48.58	22.99	33.72
Merged-chr11-115603889-3	chr11	115603414	115604414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025305)	promoter-TSS (NM_025305)	2.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	159.03	88.93	91.57	157.88	115.69	126.19	155.26	94.18	65.58
Merged-chr2-26744539-3	chr2	26744036	26745036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12816.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	21.74	31.33	24.05	28.34	15.86	32.96	32.74	33.16	36.85
Merged-chr12-102380327-3	chr12	102379833	102380833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	59480.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	44.05	39.63	60.12	35.09	38.72	47.42	64.43	49.52	29.35
Merged-chr6-149141527-3	chr6	149141037	149142037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177101)	promoter-TSS (NM_177101)	24.0	NM_001252095	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	68.65	59.44	16.65	62.75	49.45	38.58	39.08	39.35	19.36
Merged-chr18-70644536-3	chr18	70644054	70645054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76262.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	109.26	127.18	92.5	129.55	111.5	104.49	211.24	244.08	121.78
Merged-chr9-110305258-4	chr9	110304778	110305778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081381)	promoter-TSS (NM_001081381)	86.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	84.09	81.56	60.12	74.89	99.83	106.1	84.49	106.56	61.2
Merged-chr15-5414611-3	chr15	5414116	5415116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81702.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	60.07	59.9	23.12	62.07	44.78	25.72	61.26	45.99	28.73
Merged-chr19-45047676-3	chr19	45047198	45048198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_155547, exon 1 of 11)	non-coding (NR_155547, exon 1 of 11)	122.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	130.43	97.23	101.74	160.58	116.16	135.84	140.47	101.7	128.03
Merged-chr8-109692920-3	chr8	109692431	109693431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	CpG	363.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	355.82	340.52	202.56	385.94	313.49	256.41	320.02	347.54	156.13
Merged-chr11-93968454-3	chr11	93967961	93968961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008704)	promoter-TSS (NM_008704)	60.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	147.59	96.3	58.27	129.55	94.23	81.99	152.09	127.79	43.72
Merged-chr4-148676811-3	chr4	148676306	148677306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33489.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	32.04	29.03	11.1	17.54	14.93	21.7	68.65	70.75	57.46
Merged-chr12-84009440-3	chr12	84008956	84009956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012006)	promoter-TSS (NM_012006)	-46.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	93.24	93.08	74.0	147.76	106.36	106.9	81.33	60.58	49.96
Merged-chr2-21022579-3	chr2	21022067	21023067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53693.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	9.72	8.75	8.32	4.05	4.67	3.22	5.28	4.86	6.25
Merged-chr13-111936144-3	chr13	111935641	111936641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68205.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	141.87	119.8	82.32	176.78	121.76	140.66	155.26	146.36	99.92
Merged-chr13-110944862-3	chr13	110944358	110945358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41012.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	70.36	65.89	36.07	103.23	73.71	70.73	100.34	103.02	32.48
Merged-chr7-80832409-3	chr7	80831912	80832912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-29081.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	97.25	75.57	65.67	115.38	64.38	93.24	94.0	110.98	66.82
Merged-chr5-32863606-3	chr5	32863093	32864093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-128.0	NM_177786	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	33.18	37.78	34.22	33.06	34.52	47.42	46.47	30.95	42.47
Merged-chr2-38514614-3	chr2	38514120	38515120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	2744.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	11.44	5.99	3.7	15.52	3.27	3.22	3.17	5.31	1.25
Merged-chr12-70476948-3	chr12	70476494	70477494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23840.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	189.35	158.97	117.47	147.09	132.49	184.87	197.51	212.24	132.4
Merged-chr3-138143440-3	chr3	138142945	138143945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348196)	promoter-TSS (NM_001348196)	-3.0	NM_175389	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	277.45	394.89	285.81	292.83	381.14	280.52	310.52	427.58	214.84
Merged-chr8-126583100-1	chr8	126582600	126583600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10336.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	78.37	49.76	61.05	119.43	69.98	71.54	68.65	57.92	47.46
Merged-chr7-122251914-3	chr7	122251424	122252424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32428.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	16.59	11.98	11.1	14.17	13.06	16.08	26.4	7.07	9.99
Merged-chr15-86244584-1	chr15	86244084	86245084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	L1MA4|LINE|L1	30125.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	26.31	13.82	14.8	4.05	2.33	1.61	6.34	6.19	3.12
Merged-chr2-117121496-1	chr2	117120996	117121996	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_033524, exon 1 of 7)	5' UTR (NM_033524, exon 1 of 7)	425.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	223.1	156.67	197.94	226.03	111.5	181.66	202.79	103.02	116.79
Merged-chr4-118437436-3	chr4	118436945	118437945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023223)	promoter-TSS (NM_023223)	-102.0	NM_023223	107995.0	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	16.59	12.9	16.65	11.47	11.66	18.49	30.63	17.69	23.73
Merged-chr6-87887839-3	chr6	87887333	87888333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017477)	promoter-TSS (NM_017477)	-107.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	77.23	87.55	47.17	72.19	72.78	68.32	86.61	67.21	28.1
Merged-chr9-90226583-3	chr9	90226091	90227091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 5 of 12)	intron (NM_194334, intron 5 of 12)	44178.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	124.71	150.22	96.2	156.53	117.09	126.19	142.59	112.31	81.81
Merged-chr19-41321373-3	chr19	41320874	41321874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-57370.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	157.31	151.14	100.82	149.79	100.3	103.69	133.08	140.61	90.56
Merged-chr17-46674323-3	chr17	46673814	46674814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144857)	promoter-TSS (NM_144857)	-59.0	NM_144857	224823.0	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	92.67	75.11	101.74	93.11	56.91	117.35	80.27	89.32	85.56
Merged-chr8-75093622-3	chr8	75093132	75094132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	14.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	160.18	146.53	131.34	173.4	156.75	151.92	156.32	206.49	102.42
Merged-chr13-112786388-2	chr13	112785891	112786891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-14386.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.72	4.61	5.55	60.72	29.86	22.51	84.49	80.47	37.47
Merged-chr2-72980509-3	chr2	72980006	72981006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018042)	promoter-TSS (NM_001018042)	-60.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	311.2	350.66	328.36	260.44	262.18	356.88	296.79	330.3	256.68
Merged-chr5-69556923-3	chr5	69556428	69557428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172711)	promoter-TSS (NM_172711)	4.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	224.82	126.72	115.62	240.87	105.43	131.82	201.73	149.89	71.82
Merged-chr11-95384691-4	chr11	95384250	95385250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357797)	promoter-TSS (NM_001357797)	-106.0	NM_016752	110172.0	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	UGTrel1|Ugalt2	solute carrier family 35, member B1	protein-coding	268.87	317.48	141.52	247.62	256.11	147.9	252.43	291.83	107.42
Merged-chr15-27941242-3	chr15	27940733	27941733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	84615.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	181.91	143.3	131.34	161.26	140.42	156.74	135.19	135.3	99.92
Merged-chr2-132597411-3	chr2	132596913	132597913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	-783.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	235.11	233.16	111.92	269.89	234.19	188.09	147.87	210.03	101.17
Merged-chr1-78537712-3	chr1	78537209	78538209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	26649.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	45.19	41.93	11.1	71.52	82.11	30.54	34.85	30.07	14.36
Merged-chr11-23256438-3	chr11	23255944	23256944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134014, exon 2 of 26)	5' UTR (NM_134014, exon 2 of 26)	403.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	382.7	305.96	303.38	358.28	312.09	284.54	387.62	400.6	194.85
Merged-chr18-77065109-3	chr18	77064626	77065626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164167)	promoter-TSS (NM_001164167)	-82.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	85.81	76.03	70.3	91.09	70.91	81.18	111.96	52.62	51.84
Merged-chr7-73533106-3	chr7	73532591	73533591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	8655.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	136.72	121.65	79.55	195.67	150.68	143.07	168.99	133.53	90.56
Merged-chr13-14062697-3	chr13	14062196	14063196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331178, intron 1 of 4)	intron (NM_001331178, intron 1 of 4)	792.0	NM_001331119	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	164.18	185.24	155.39	114.03	129.69	143.07	147.87	175.54	120.53
Merged-chr5-139793619-3	chr5	139793120	139794120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	2084.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	106.4	83.86	76.77	107.28	100.3	79.58	76.05	85.34	30.6
Merged-chr5-92465665-3	chr5	92465161	92466161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7104.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	108.69	110.59	64.75	118.75	132.02	122.98	132.02	148.57	76.82
Merged-chr3-95893871-3	chr3	95893390	95894390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-31.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	50.34	41.93	26.82	52.63	39.19	47.42	71.82	59.25	61.83
Merged-chr14-77794644-3	chr14	77794173	77795173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033440, exon 3 of 3)	3' UTR (NM_001033440, exon 3 of 3)	4295.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	58.35	68.66	37.0	70.17	77.91	93.24	113.01	133.53	103.67
Merged-chr14-76778940-1	chr14	76778440	76779440	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18809.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	2.29	4.15	0.0	4.05	6.53	1.61	34.85	33.16	21.86
Merged-chr12-80115523-5	chr12	80115014	80116014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2501.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	542.88	464.47	393.11	414.28	391.4	273.29	430.92	447.03	266.67
Merged-chr11-21224632-3	chr11	21224118	21225118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14414.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	118.42	197.68	126.72	129.55	137.62	86.81	125.69	192.78	98.68
Merged-chr7-43465544-3	chr7	43465048	43466048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290316, intron 4 of 9)	intron (NM_001290316, intron 4 of 9)	2315.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	74.37	52.53	56.42	84.34	48.98	83.59	105.62	66.77	56.83
Merged-chr2-130667747-3	chr2	130667246	130668246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025922)	promoter-TSS (NM_025922)	-95.0	NM_025922	16434.0	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|ITPase|Itp|NTPase	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	25.17	28.57	40.7	29.69	29.86	50.64	46.47	27.41	23.11
Merged-chr6-124359157-3	chr6	124358663	124359663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	77.23	76.49	55.5	69.5	51.78	69.93	51.75	65.88	52.46
Merged-chr5-113644655-3	chr5	113644168	113645168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-1065.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	269.44	283.84	237.71	283.38	265.44	241.94	324.25	343.12	146.14
Merged-chr11-94211306-3	chr11	94210808	94211808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009427)	promoter-TSS (NM_009427)	-146.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	126.42	112.43	82.32	134.94	78.37	98.06	123.57	84.01	66.2
Merged-chr19-34192249-3	chr19	34191752	34192752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360716)	promoter-TSS (NM_001360716)	23.0	NM_029682	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	245.41	174.64	144.29	225.36	186.6	175.23	253.48	243.63	121.78
Merged-chr14-55560640-5	chr14	55560131	55561131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	-292.0	NM_001199009	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	490.82	417.47	248.81	418.32	406.33	266.05	398.18	460.74	184.86
Merged-chr19-21045808-3	chr19	21045294	21046294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58916.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	8.58	1.84	2.77	20.92	10.73	6.43	7.39	5.75	6.87
Merged-chr10-37137158-3	chr10	37136654	37137654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008538, intron 1 of 1)	CpG	1772.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	101.25	77.87	92.5	83.66	61.11	114.14	73.93	49.96	52.46
Merged-chr17-33810440-3	chr17	33809951	33810951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357162)	promoter-TSS (NM_001357162)	-72.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	7.44	4.15	7.4	24.96	8.4	18.49	4.22	3.1	3.75
Merged-chr3-152209782-2	chr3	152209277	152210277	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	306.0	NM_001356363	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	537.73	399.5	241.41	522.91	400.26	251.59	420.36	373.63	183.61
Merged-chr17-35736695-1	chr17	35736195	35737195	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32096.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.57	0.46	0.0	0.67	0.93	1.61	41.19	26.09	22.48
Merged-chr14-57889790-2	chr14	57889268	57890268	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	568.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	217.38	223.02	200.71	207.81	243.98	188.89	227.08	204.72	140.52
Merged-chr15-38661888-3	chr15	38661399	38662399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-5.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	259.14	248.36	161.87	259.77	306.03	173.62	284.11	300.23	119.28
Merged-chrM-5466-2	chrM	4917	5917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											185.35	144.69	8.32	99.86	28.92	28.94	72.88	33.6	22.48
Merged-chr17-84103593-3	chr17	84103088	84104088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24928.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	99.54	108.75	144.29	132.92	102.63	120.57	102.45	120.71	85.56
Merged-chr12-100005483-3	chr12	100004987	100005987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	40988.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	159.6	132.25	75.85	158.56	134.35	111.73	173.21	172.45	76.82
Merged-chr4-58613233-3	chr4	58612740	58613740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59749.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	30.32	38.71	24.05	24.29	30.79	27.33	47.53	44.66	22.48
Merged-chr2-145720344-3	chr2	145719835	145720835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19140.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	9.15	11.98	5.55	13.49	7.46	6.43	14.79	5.75	7.49
Merged-chr4-88033418-3	chr4	88032924	88033924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027326)	promoter-TSS (NM_027326)	-17.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	12.59	10.14	27.75	20.24	17.26	21.7	29.57	19.01	8.12
Merged-chr11-46798496-3	chr11	46797967	46798967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12332.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	62.35	49.76	32.37	49.25	31.72	36.17	54.92	43.77	38.1
Merged-chr18-30513775-3	chr18	30513272	30514272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	240907.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	30.32	41.47	24.97	13.49	14.46	10.45	31.69	29.18	28.73
Merged-chr16-49943859-3	chr16	49943347	49944347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11983.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	8.01	5.53	5.55	2.7	4.67	0.0	9.51	5.75	11.24
Merged-chr15-58889518-3	chr15	58889023	58890023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175151)	TTS (NM_175151)	294.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	396.43	378.3	310.78	352.2	311.16	232.29	332.7	308.63	194.85
Merged-chr13-37595367-3	chr13	37594852	37595852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230686.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	167.61	166.34	167.42	179.47	118.96	143.07	172.16	190.13	108.67
Merged-chr2-124385853-1	chr2	124385353	124386353	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-163495.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	1.72	5.07	0.0	3.37	6.06	3.22	2.11	6.63	3.75
Merged-chr15-50871397-3	chr15	50870903	50871903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	17646.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	112.12	99.99	51.8	87.04	79.77	64.3	47.53	55.71	47.46
Merged-chr8-41417115-3	chr8	41416602	41417602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013522)	promoter-TSS (NM_013522)	16.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	87.52	78.33	86.02	74.89	76.04	61.89	115.12	78.26	44.97
Merged-chr6-149375312-3	chr6	149374817	149375817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33667.0	NM_001112796	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	45.76	51.61	17.57	51.95	55.05	34.56	59.15	73.4	33.72
Merged-chr2-119972392-3	chr2	119971911	119972911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-288.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	33.75	31.33	20.35	37.11	26.12	34.56	23.24	22.11	23.11
Merged-chr1-138618106-3	chr1	138617613	138618613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	1644.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	139.01	142.84	106.37	135.62	114.29	74.75	119.35	152.11	73.07
Merged-chr10-60760623-3	chr10	60760140	60761140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7858.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	5.15	3.23	9.25	6.07	0.93	4.02	2.11	0.88	1.25
Merged-chr14-50944538-3	chr14	50944022	50945022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013632, exon 1 of 6)	5' UTR (NM_013632, exon 1 of 6)	219.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	74.37	90.77	57.35	90.41	74.64	83.59	106.67	80.92	66.2
Merged-chr17-28013414-3	chr17	28012902	28013902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67182.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	47.48	29.49	22.2	70.17	56.45	42.6	34.85	42.01	16.24
Merged-chr11-100355468-3	chr11	100354937	100355937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359052, intron 1 of 12)	CpG	691.0	NM_001359052	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	87.52	71.42	56.42	95.14	71.84	86.01	60.2	86.22	38.1
Merged-chr14-66200002-3	chr14	66199507	66200507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 2 of 30)	intron (NM_001162366, intron 2 of 30)	13817.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	10.87	8.75	9.25	10.8	7.93	8.84	15.84	3.1	7.49
Merged-chr15-66814160-3	chr15	66813674	66814674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	17655.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	195.64	273.71	193.32	211.19	186.6	208.98	158.43	170.68	126.78
Merged-chrX-7722159-3	chrX	7721667	7722667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290792)	promoter-TSS (NM_001290792)	-53.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	72.08	80.18	44.4	57.35	70.44	80.38	101.39	61.9	48.09
Merged-chr6-140623490-3	chr6	140622996	140623996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009637)	promoter-TSS (NM_009637)	-6.0	NM_001005605	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	191.07	145.61	125.79	226.71	116.16	123.78	189.06	155.64	118.04
Merged-chr11-73093095-3	chr11	73092589	73093589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	2494.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	39.47	29.95	28.67	55.33	37.32	28.94	13.73	12.38	16.24
Merged-chr2-79370849-3	chr2	79370348	79371348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	58140.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	26.31	22.12	24.05	19.57	12.6	20.9	15.84	31.39	23.11
Merged-chr8-35394289-3	chr8	35393769	35394769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18528.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	58.92	42.85	40.7	70.85	43.39	45.82	65.48	54.39	54.96
Merged-chr1-43915364-3	chr1	43914876	43915876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18618.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	237.4	264.95	139.67	260.44	234.19	170.4	262.99	367.44	110.54
Merged-chr10-79681945-3	chr10	79681429	79682429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177613)	promoter-TSS (NM_177613)	-266.0	NM_001359818	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	101.83	70.96	102.67	80.29	54.58	87.61	118.29	71.19	69.32
Merged-chr1-171059458-3	chr1	171058964	171059964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010188)	promoter-TSS (NM_010188)	-61.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	124.14	122.11	88.8	133.59	89.57	92.44	141.53	118.06	80.56
Merged-chr10-12573834-3	chr10	12573332	12574332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287903.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	14.3	3.69	5.55	9.45	4.67	7.23	8.45	13.71	6.87
Merged-chr9-31283235-3	chr9	31282741	31283741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	11840.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	24.03	17.05	17.57	35.09	21.93	36.97	32.74	26.97	18.74
Merged-chr9-90067586-3	chr9	90067152	90068152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 7 of 10)	intron (NM_001312649, intron 7 of 10)	13385.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	16.02	15.21	22.2	9.45	8.4	6.43	16.9	22.11	19.36
Merged-chr12-111946875-3	chr12	111946355	111947355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2373.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	50.91	35.02	37.0	28.34	34.52	24.92	28.52	28.74	26.23
Merged-chr4-3678109-3	chr4	3677605	3678605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-16.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	323.78	333.15	271.01	336.01	342.42	264.45	330.59	387.34	187.98
Merged-chr12-85474446-2	chr12	85473941	85474941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010234, intron 1 of 3)	CpG	551.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	205.94	128.56	101.74	235.48	177.74	168.8	156.32	164.93	79.32
Merged-chr5-113647375-3	chr5	113646876	113647876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	3014.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	158.46	155.75	114.69	178.8	140.89	147.9	190.11	190.13	110.54
Merged-chr4-43656540-3	chr4	43656040	43657040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026871)	promoter-TSS (NM_026871)	-95.0	NM_026871	68917.0	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	37.18	51.15	33.3	39.81	39.19	48.23	54.92	53.94	21.23
Merged-chr2-129489666-3	chr2	129489177	129490177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46925.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	249.99	291.22	175.74	253.69	224.39	201.75	278.83	302.88	148.01
Merged-chr5-41708324-3	chr5	41707846	41708846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310589)	promoter-TSS (NM_001310589)	-167.0	NM_001310590	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	264.29	237.76	146.14	213.21	158.61	141.47	211.24	173.77	126.15
Merged-chr15-37007472-3	chr15	37006983	37007983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026521)	promoter-TSS (NM_026521)	-81.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	343.23	263.11	253.44	344.78	250.98	212.2	316.86	208.26	151.14
Merged-chr4-53080400-3	chr4	53079894	53080894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 17 of 49)	MIRb|SINE|MIR	68514.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	52.63	40.55	17.57	84.34	33.12	34.56	98.23	99.05	19.36
Merged-chr10-53379868-3	chr10	53379354	53380354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204983)	promoter-TSS (NM_001204983)	-3.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	147.59	151.14	179.44	132.92	139.02	127.8	186.94	132.65	99.92
Merged-chr7-134670770-3	chr7	134670239	134671239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	52.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	23.45	20.74	12.95	34.41	18.66	22.51	26.4	12.82	9.99
Merged-chr1-156459849-3	chr1	156459350	156460350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	14478.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	109.83	76.49	86.95	122.12	85.84	83.59	87.66	109.66	36.85
Merged-chr17-36958590-3	chr17	36958103	36959103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029602)	promoter-TSS (NM_029602)	11.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	324.35	311.95	125.79	201.07	215.53	135.04	239.75	267.95	127.4
Merged-chr1-84350462-3	chr1	84349964	84350964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65819.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	42.33	53.91	57.35	56.0	30.79	35.37	45.42	43.33	30.6
Merged-chr2-91710898-3	chr2	91710406	91711406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145528)	promoter-TSS (NM_145528)	54.0	NM_001356518	241547.0	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	256.85	287.99	165.57	282.71	361.54	219.43	279.89	396.18	128.03
Merged-chr16-35022362-3	chr16	35021877	35022877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023587)	promoter-TSS (NM_023587)	-44.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	35.47	27.65	34.22	48.58	27.06	32.96	34.85	22.11	22.48
Merged-chr13-81352493-3	chr13	81351992	81352992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	280652.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	106.4	110.13	51.8	116.05	102.17	82.79	111.96	97.72	53.08
Merged-chr3-122566709-3	chr3	122566217	122567217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 5 of 15)	intron (NM_001114665, intron 5 of 15)	-25036.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	48.05	63.13	31.45	68.82	64.84	49.03	92.94	81.8	49.34
Merged-chr8-106412398-3	chr8	106411879	106412879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	128.14	131.78	111.92	165.98	91.44	114.94	175.33	173.33	68.7
Merged-chr3-95994005-3	chr3	95993509	95994509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1830.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	225.96	240.99	105.44	240.87	249.58	144.68	255.6	292.27	121.78
Merged-chr6-124917315-3	chr6	124916807	124917807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	(CGGGG)n|Simple_repeat|Simple_repeat	444.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	130.43	61.75	91.57	130.9	69.51	71.54	121.46	68.09	56.83
Merged-chr14-62332174-3	chr14	62331722	62332722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 1 of 10)	CpG	154.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	116.13	129.48	80.47	121.45	145.55	109.32	158.43	146.8	49.96
Merged-chr10-78185160-3	chr10	78184654	78185654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029546)	promoter-TSS (NM_029546)	-5.0	NM_029546	110816.0	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	82.38	113.81	44.4	70.85	84.44	96.45	118.29	126.46	77.44
Merged-chr1-193160504-3	chr1	193160015	193161015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016851, intron 2 of 7)	intron (NM_016851, intron 2 of 7)	7403.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	13.16	15.67	11.1	11.47	13.06	11.25	12.67	13.27	10.62
Merged-chr10-127607264-3	chr10	127606762	127607762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 4 of 88)	L1ME3G|LINE|L1	13886.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	61.78	47.46	43.47	101.88	54.11	103.69	90.83	49.96	48.71
Merged-chr15-7114062-3	chr15	7113516	7114516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15556.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	10.3	11.52	10.17	10.8	3.27	6.43	8.45	4.86	7.49
Merged-chr17-34257832-3	chr17	34257340	34258340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5387.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	145.87	119.34	126.72	91.76	53.65	60.28	105.62	169.79	98.05
Merged-chr2-121956402-3	chr2	121955916	121956916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008545)	promoter-TSS (NM_008545)	-324.0	NM_008545	17147.0	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	130.43	164.5	148.92	152.49	146.02	168.8	170.05	203.4	119.91
Merged-chr16-91475926-2	chr16	91475438	91476438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-9277.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	246.56	112.43	132.27	209.84	118.49	101.28	7.39	3.98	3.12
Merged-chr9-107985884-3	chr9	107985389	107986389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	27.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	101.83	80.18	79.55	116.73	56.91	94.85	81.33	98.6	45.59
Merged-chr11-63091197-3	chr11	63090696	63091696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	29537.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	6.86	7.37	12.95	20.92	7.0	22.51	31.69	20.78	22.48
Merged-chr12-85255641-3	chr12	85255124	85256124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	intron (NM_175337, intron 5 of 11)	-9639.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	139.58	96.76	76.77	109.98	79.77	65.11	63.37	52.62	33.1
Merged-chr18-53245878-1	chr18	53245378	53246378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	CpG	216.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	230.54	211.5	188.69	268.54	194.53	212.2	268.27	233.46	146.76
Merged-chr19-55099465-3	chr19	55098960	55099960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008149)	promoter-TSS (NM_008149)	17.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	120.7	109.67	98.97	149.11	143.68	130.21	151.03	130.88	65.58
Merged-chr14-7976357-3	chr14	7975861	7976861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 5 of 7)	intron (NM_007870, intron 5 of 7)	17821.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	27.46	21.2	17.57	20.24	7.0	9.65	13.73	14.15	9.99
Merged-chr10-19014765-2	chr10	19014251	19015251	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	659.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	296.9	239.15	184.07	280.01	168.88	143.88	314.74	302.88	155.51
Merged-chr14-70981235-2	chr14	70980729	70981729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91122.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	17.73	12.9	14.8	24.29	30.79	14.47	5.28	2.21	5.62
Merged-chr15-12211682-3	chr15	12211174	12212174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	6646.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	36.04	10.6	1.85	20.24	18.66	17.68	23.24	18.13	11.24
Merged-chr18-3337587-6	chr18	3337113	3338113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110852)	promoter-TSS (NM_001110852)	-24.0	NM_001110852	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	474.23	421.62	301.53	473.65	361.08	240.33	399.24	357.27	212.96
Merged-chr9-63612188-3	chr9	63611687	63612687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	9541.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	133.29	128.56	106.37	113.35	78.84	104.49	147.87	172.45	64.95
Merged-chr2-158133254-3	chr2	158132743	158133743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	13149.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	149.88	127.18	91.57	167.33	145.08	143.07	123.57	120.71	74.94
Merged-chr17-46857272-2	chr17	46856791	46857791	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25878.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	473.66	556.17	441.2	479.05	482.84	391.44	481.62	408.12	272.92
Merged-chr7-64374064-3	chr7	64373561	64374561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	34.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	54.35	65.89	38.85	72.87	79.31	82.79	91.89	72.52	73.69
Merged-chr8-88137827-3	chr8	88137334	88138334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-51.0	NM_172757	234549.0	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	255.71	264.49	197.02	243.57	356.41	205.77	195.39	226.39	114.29
Merged-chr3-105959297-3	chr3	105958835	105959835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027432)	promoter-TSS (NM_027432)	-163.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	151.59	151.6	149.84	118.75	158.61	134.23	154.2	150.78	81.19
Merged-chr12-100184296-3	chr12	100183774	100184774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3694.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	149.31	112.89	71.22	117.4	113.36	65.91	110.9	108.33	48.71
Merged-chr8-79370818-3	chr8	79370315	79371315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	28653.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	62.93	72.8	37.92	73.54	41.05	66.71	70.76	74.73	47.46
Merged-chr10-95195974-3	chr10	95195469	95196469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	-50144.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	28.03	18.43	23.12	29.69	22.39	20.9	26.4	35.82	19.36
Merged-chr18-82635675-3	chr18	82635187	82636187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177832, intron 13 of 29)	RLTR22_Mur|LTR|ERVK	57047.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	20.59	23.96	31.45	18.89	22.86	20.9	30.63	11.94	13.12
Merged-chr15-78879306-3	chr15	78878819	78879819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	2129.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	84.66	63.13	61.97	102.56	64.84	98.87	92.94	91.53	72.45
Merged-chr18-38365086-3	chr18	38364574	38365574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-26081.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	24.03	24.88	19.42	27.66	31.72	28.94	23.24	31.84	19.98
Merged-chr18-83832312-3	chr18	83831816	83832816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	254246.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	38.9	38.71	12.02	40.48	24.26	8.04	25.35	19.01	19.36
Merged-chr8-120564034-3	chr8	120563546	120564546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 3 of 15)	intron (NM_001145896, intron 3 of 15)	25029.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	228.82	182.47	154.47	250.99	138.55	183.26	200.68	191.46	138.02
Merged-chr7-29307939-3	chr7	29307441	29308441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013874, intron 1 of 11)	CpG	3936.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	1.72	4.15	3.7	5.4	3.73	8.04	10.56	2.21	9.99
Merged-chr1-125435647-4	chr1	125435192	125436192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205385)	promoter-TSS (NM_001205385)	35.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	235.11	155.75	173.89	205.79	147.88	131.82	237.64	187.92	129.9
Merged-chr11-106613179-3	chr11	106612674	106613674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-244.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	234.54	162.66	162.79	214.56	146.02	109.32	209.12	227.27	106.17
Merged-chr2-26503849-3	chr2	26503337	26504337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	-15.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	105.83	90.77	115.62	105.93	80.71	102.08	98.23	78.71	69.95
Merged-chr9-32695968-3	chr9	32695456	32696456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011808)	promoter-TSS (NM_011808)	-86.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	122.42	128.1	69.37	161.93	167.94	119.76	133.08	133.09	43.09
Merged-chr2-122375607-3	chr2	122375103	122376103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6685.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	97.82	126.25	123.94	115.38	100.77	73.14	92.94	133.09	84.31
Merged-chrX-159532571-3	chrX	159532076	159533076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033472)	promoter-TSS (NM_001033472)	-92.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	29.17	17.05	22.2	24.29	22.86	31.35	17.96	26.97	15.61
Merged-chr14-54398087-3	chr14	54397575	54398575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	11397.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	127.0	132.25	98.05	165.31	120.83	152.72	174.27	135.3	67.45
Merged-chr5-137286823-3	chr5	137286329	137287329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_009599	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	8.58	6.91	1.85	6.75	3.27	1.61	9.51	4.86	7.49
Merged-chr17-62448287-2	chr17	62447800	62448800	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	433017.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	5.15	4.15	0.0	4.72	3.73	8.04	5.28	4.86	0.0
Merged-chr16-76203123-3	chr16	76202634	76203634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80521.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	84.09	93.08	46.25	120.1	121.29	94.85	119.35	121.15	54.96
Merged-chr12-25283946-3	chr12	25283448	25284448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154774.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	40.04	42.85	26.82	53.3	36.85	48.23	49.64	38.47	39.97
Merged-chr11-121702396-3	chr11	121701885	121702885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144797)	promoter-TSS (NM_144797)	-42.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	191.07	160.81	138.74	205.11	181.01	172.81	218.63	185.71	120.53
Merged-chr2-32847333-3	chr2	32846823	32847823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009295)	promoter-TSS (NM_009295)	-86.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	119.56	98.61	140.59	132.92	118.03	97.26	121.46	111.87	55.58
Merged-chr17-81665116-3	chr17	81664615	81665615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	73272.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	71.51	55.29	22.2	60.72	29.39	31.35	53.87	57.48	36.85
Merged-chr7-125601929-3	chr7	125601436	125602436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	167.04	160.35	110.99	89.74	69.98	77.97	159.48	181.73	73.07
Merged-chr10-84409075-3	chr10	84408576	84409576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31395.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	90.38	100.45	52.72	60.72	80.24	57.87	73.93	65.0	55.58
Merged-chr2-60910921-3	chr2	60910404	60911404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-29466.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	21.74	18.43	8.32	35.76	27.06	19.29	33.8	33.6	12.49
Merged-chr12-20815793-3	chr12	20815291	20816291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015521)	promoter-TSS (NR_015521)	-12.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.86	5.53	20.35	10.8	6.53	12.86	21.12	25.2	14.36
Merged-chr1-138192206-3	chr1	138191719	138192719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16914.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	49.2	41.93	16.65	49.25	30.79	41.8	24.29	33.6	24.98
Merged-chr18-50111416-3	chr18	50110879	50111879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16822.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	54.92	36.86	24.97	53.98	59.71	66.71	23.24	26.97	8.74
Merged-chr18-67249166-3	chr18	67248663	67249663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3333.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	90.38	89.39	43.47	84.34	55.51	53.85	110.9	126.9	73.07
Merged-chr13-20127707-3	chr13	20127189	20128189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	37182.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	105.83	91.24	60.12	57.35	47.58	51.44	58.09	70.3	77.44
Merged-chr14-13361836-3	chr14	13361311	13362311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	77031.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	7.44	15.67	17.57	83.66	88.64	77.97	54.92	65.0	41.84
Merged-chr18-52567536-3	chr18	52567056	52568056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37689.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	31.46	36.86	24.05	69.5	47.12	60.28	65.48	69.86	23.11
Merged-chr17-21534689-3	chr17	21534192	21535192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-847.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	18.88	41.01	30.52	33.06	20.99	28.94	30.63	40.68	23.11
Merged-chr17-78917947-3	chr17	78917460	78918460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177403, intron 1 of 4)	intron (NM_001177403, intron 1 of 4)	1461.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	44.62	64.05	41.62	45.21	29.39	63.5	53.87	75.61	43.09
Merged-chr4-53122473-1	chr4	53121973	53122973	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37422.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	71.51	88.01	70.3	103.23	73.24	89.22	107.73	90.64	75.57
Merged-chr1-156040848-3	chr1	156040355	156041355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-6.0	NM_001160181	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	120.13	133.17	71.22	109.98	101.7	97.26	108.79	125.13	79.94
Merged-chr15-103323584-3	chr15	103323096	103324096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 2 of 7)	G-rich|Low_complexity|Low_complexity	10742.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	26.89	21.66	32.37	35.76	13.06	29.74	44.36	31.39	24.98
Merged-chr17-36231497-3	chr17	36230984	36231984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	26362.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	3.43	1.84	0.0	6.75	1.87	1.61	1.06	1.33	6.25
Merged-chr6-31113013-3	chr6	31112516	31113516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	(CA)n|Simple_repeat|Simple_repeat	-49923.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	267.15	234.08	100.82	248.3	250.98	136.64	227.08	298.46	157.38
Merged-chr13-93231231-3	chr13	93230726	93231726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38809.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	116.13	105.52	74.92	77.59	56.45	73.14	90.83	90.2	78.07
Merged-chr4-3679016-3	chr4	3678519	3679519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	898.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	310.63	346.05	241.41	352.88	288.3	265.25	313.69	344.45	186.11
Merged-chr4-129081806-3	chr4	129081300	129082300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 7 of 8)	intron (NM_029219, intron 7 of 8)	23529.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	65.21	78.79	64.75	109.3	69.51	111.73	67.6	73.4	84.94
Merged-chr2-152227340-2	chr2	152226828	152227828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007788, intron 1 of 12)	CpG	488.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	102.97	90.31	137.82	107.28	78.37	120.57	95.06	81.8	79.94
Merged-chr10-95361392-2	chr10	95360887	95361887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 2 of 2)	intron (NR_045337, intron 2 of 2)	25111.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	5.72	3.23	0.0	4.05	4.2	11.25	12.67	13.27	5.0
Merged-chr10-98880916-3	chr10	98880415	98881415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-33727.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	448.49	454.33	212.74	544.5	445.98	303.83	407.69	590.74	202.35
Merged-chr17-6601695-3	chr17	6601194	6602194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166627)	promoter-TSS (NM_001166627)	23.0	NM_001166627	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	89.81	87.09	75.85	81.64	112.9	114.94	50.7	74.28	42.47
Merged-chr2-73496173-3	chr2	73495667	73496667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-10414.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	266.0	205.97	186.84	194.32	131.56	126.19	144.7	175.98	101.17
Merged-chr11-26602368-3	chr11	26601865	26602865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8445.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	157.89	126.72	74.92	171.38	107.76	117.35	178.5	180.4	88.68
Merged-chr10-86706239-3	chr10	86705765	86706765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	454.0	NM_001003939	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	399.29	481.52	251.59	353.55	418.92	295.79	378.11	478.87	207.34
Merged-chr3-89411975-3	chr3	89411481	89412481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362375)	promoter-TSS (NM_001362375)	-100.0	NR_155545	319945.0	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	40.62	62.21	25.9	41.83	53.65	42.6	51.75	55.71	24.98
Merged-chr6-85961851-5	chr6	85961325	85962325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028099)	promoter-TSS (NM_028099)	-158.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	392.43	428.53	332.06	352.2	407.73	321.52	334.81	350.2	252.31
Merged-chr15-101144915-3	chr15	101144425	101145425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277259, exon 12 of 12)	3' UTR (NM_001277259, exon 12 of 12)	16403.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	137.86	76.95	94.35	83.66	41.05	114.94	143.64	106.12	61.2
Merged-chr3-96226917-3	chr3	96226433	96227433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	5861.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	160.18	131.32	85.1	152.49	117.56	106.1	146.81	191.46	73.69
Merged-chr17-44105798-3	chr17	44105303	44106303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199016)	promoter-TSS (NM_199016)	5.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	121.28	126.72	102.67	96.48	57.85	92.44	124.63	106.12	117.41
Merged-chr5-140207287-3	chr5	140206865	140207865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-32447.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	57.78	73.26	86.95	68.82	81.17	111.73	143.64	135.75	73.07
Merged-chr2-103955877-3	chr2	103955390	103956390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-2105.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	12.59	11.98	12.95	22.27	7.46	8.04	15.84	12.38	13.12
Merged-chr11-50377103-2	chr11	50376605	50377605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-614.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	139.58	109.67	86.95	87.04	97.03	126.19	102.45	124.25	71.2
Merged-chr7-82866254-3	chr7	82865777	82866777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1056.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	38.33	36.86	78.62	37.11	34.06	40.19	51.75	60.58	66.82
Merged-chr11-59562976-3	chr11	59562456	59563456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	MTE2b|LTR|ERVL-MaLR	8782.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	112.12	105.52	45.32	136.97	74.64	81.18	72.88	72.52	68.7
Merged-chrUn_GL456359-19543-1	chrUn_GL456359	19043	20043	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	9.51	8.84	0.0
Merged-chr1-93071580-3	chr1	93071089	93072089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	10891.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	152.17	170.49	59.2	155.86	126.89	120.57	129.91	99.93	68.7
Merged-chr8-11103942-3	chr8	11103438	11104438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95508.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	33.75	24.42	16.65	62.75	57.85	43.4	22.18	18.13	9.37
Merged-chr17-83861836-3	chr17	83861313	83862313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7395.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	68.65	58.52	56.42	69.5	76.04	64.3	71.82	55.71	32.48
Merged-chr4-141210690-1	chr4	141210190	141211190	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3266.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	2.86	1.38	0.0	2.7	6.53	10.45	115.12	152.99	60.58
Merged-chr4-129820032-3	chr4	129819513	129820513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	-466.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	355.82	197.22	158.17	302.95	198.27	167.99	228.14	205.61	121.78
Merged-chr8-115614353-3	chr8	115613862	115614862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92532.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	113.84	131.78	71.22	115.38	81.64	121.37	103.51	109.66	113.66
Merged-chr4-9110543-3	chr4	9110035	9111035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-158758.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.58	8.29	1.85	14.17	11.2	9.65	20.07	11.94	11.24
Merged-chr8-83573286-3	chr8	83572783	83573783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027179, exon 4 of 12)	exon (NM_027179, exon 4 of 12)	6525.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	32.04	17.05	48.1	32.39	22.39	24.92	32.74	21.22	12.49
Merged-chr11-3160594-2	chr11	3160077	3161077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	MTD|LTR|ERVL-MaLR	32886.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	46.34	81.56	116.54	85.01	105.9	123.78	1.06	0.0	151.76
Merged-chr17-68213989-1	chr17	68213489	68214489	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59808.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	8.58	5.99	5.55	6.07	5.6	3.22	1.06	2.21	5.62
Merged-chr6-116664252-3	chr6	116663758	116664758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	9578.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	191.64	159.89	99.89	190.27	111.03	77.97	139.42	110.98	58.08
Merged-chr7-28766614-3	chr7	28766123	28767123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122765)	promoter-TSS (NM_001122765)	21.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	488.53	426.69	218.29	433.84	369.94	233.9	368.61	420.5	163.0
Merged-chr17-26123453-3	chr17	26122958	26123958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024227)	promoter-TSS (NM_024227)	-45.0	NM_024227	68611.0	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	42.33	51.15	37.92	58.03	47.12	54.66	31.69	40.24	28.1
Merged-chr3-9725560-6	chr3	9725046	9726046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	108133.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	66.36	55.75	30.52	68.15	45.25	53.05	79.21	67.21	50.59
Merged-chr17-25833006-3	chr17	25832500	25833500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019719, exon 1 of 7)	5' UTR (NM_019719, exon 1 of 7)	361.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	347.81	340.98	242.34	324.54	297.63	186.48	302.07	324.11	176.12
Merged-chr8-45975855-3	chr8	45975374	45976374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033148)	promoter-TSS (NM_001033148)	346.0	NM_138668	192169.0	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	262.57	363.1	178.52	215.91	262.18	188.89	258.77	325.44	156.76
Merged-chr16-29579324-3	chr16	29578827	29579827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199177)	promoter-TSS (NM_001199177)	-7.0	NM_133752	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	66.36	68.2	38.85	78.27	74.64	69.93	100.34	99.93	63.7
Merged-chr17-5454415-3	chr17	5453905	5454905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14145.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	48.05	38.71	25.9	29.69	17.26	17.68	42.25	29.18	18.11
Merged-chr19-8020128-3	chr19	8019654	8020654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54127.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	16.59	24.42	24.05	38.46	35.92	40.99	54.92	46.87	23.73
Merged-chr13-49200821-3	chr13	49200330	49201330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13283.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	418.74	353.88	187.77	422.37	328.42	269.27	337.98	414.31	182.99
Merged-chr1-63730597-3	chr1	63730056	63731056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172422)	promoter-TSS (NM_172422)	-69.0	NM_172422	75619.0	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	76.08	82.94	35.15	70.85	83.97	57.87	94.0	67.21	33.72
Merged-chrUn_JH584304-24645-1	chrUn_JH584304	24145	25145	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	35044.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	54.92	39.8	0.0
Merged-chr8-57576389-3	chr8	57575829	57576829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	Tigger9a|DNA|TcMar-Tigger	64486.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	24.6	21.2	15.72	22.27	10.26	1.61	22.18	11.94	8.74
Merged-chr5-120588807-3	chr5	120588336	120589336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145853)	promoter-TSS (NM_145853)	-187.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	36.61	38.71	31.45	35.76	26.12	39.39	39.08	26.09	16.86
Merged-chr12-102442812-3	chr12	102442290	102443290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2977.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	127.0	83.4	75.85	163.28	81.17	118.16	174.27	190.13	91.18
Merged-chr10-80102667-3	chr10	80102154	80103154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183426)	promoter-TSS (NM_183426)	48.0	NM_183426	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	212.8	180.17	235.86	171.38	125.96	160.76	224.97	210.91	148.64
Merged-chr19-29486759-3	chr19	29486249	29487249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35238.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	167.61	143.3	110.99	215.91	154.88	109.32	157.37	193.23	88.68
Merged-chr12-44265994-3	chr12	44265484	44266484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-3170.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	10.3	9.68	12.95	16.19	10.73	16.08	10.56	13.71	17.49
Merged-chr9-107968275-3	chr9	107967786	107968786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011634, intron 10 of 14)	intron (NM_011634, intron 10 of 14)	-7281.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	32.61	13.82	37.92	20.92	17.26	11.25	38.02	27.86	10.62
Merged-chr3-152402495-3	chr3	152401986	152402986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	5802.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	71.51	83.4	69.37	88.39	72.78	73.14	85.55	69.86	44.34
Merged-chr4-141273023-3	chr4	141272529	141273529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5410.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	135.58	131.32	93.42	187.57	129.69	165.58	167.93	178.19	122.41
Merged-chr5-145167105-3	chr5	145166599	145167599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	5.0	NM_133735	71799.0	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	80.66	95.38	101.74	99.18	72.78	90.83	81.33	110.98	71.2
Merged-chr7-112316712-1	chr7	112316212	112317212	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 8 of 25)	intron (NM_001193305, intron 8 of 25)	-51596.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	8.58	8.75	0.92	7.42	10.73	4.82	5.28	3.1	1.87
Merged-chr11-114982061-1	chr11	114981561	114982561	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_145437)	TTS (NM_145437)	7825.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.14	2.76	5.55	139.67	111.5	108.51	7.39	7.07	3.75
Merged-chr5-53378806-3	chr5	53378310	53379310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111704.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	3.43	9.22	9.25	14.17	3.73	1.61	6.34	5.31	7.49
Merged-chr17-74804030-1	chr17	74803530	74804530	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	MER20|DNA|hAT-Charlie	86280.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.43	2.3	3.7	5.4	1.4	3.22	36.97	37.14	18.74
Merged-chr19-42072351-2	chr19	42071855	42072855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	14015.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	28.6	21.66	7.4	40.48	18.19	17.68	3.17	0.88	2.5
Merged-chr1-36571793-3	chr1	36571277	36572277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-13396.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	156.17	146.07	114.69	149.11	94.23	134.23	139.42	149.45	94.93
Merged-chr8-8452381-3	chr8	8451882	8452882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208391.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	20.59	18.43	4.62	22.94	14.46	14.47	28.52	34.05	19.36
Merged-chr13-58215664-3	chr13	58215155	58216155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152234)	promoter-TSS (NM_152234)	-2.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	295.18	355.26	222.91	236.15	247.72	246.76	298.9	260.44	158.01
Merged-chr6-56704738-3	chr6	56704251	56705251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025520)	promoter-TSS (NM_025520)	-52.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	28.03	37.78	21.27	41.83	33.12	28.13	36.97	27.86	27.48
Merged-chr5-140842108-2	chr5	140841635	140842635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11704.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	60.07	52.53	60.12	82.99	59.71	57.87	6.34	11.05	6.25
Merged-chr18-38338428-3	chr18	38337912	38338912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	581.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	180.2	224.4	120.24	261.12	342.88	160.76	265.1	290.95	123.03
Merged-chr6-145121058-3	chr6	145120610	145121610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	-629.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	317.49	288.45	194.24	297.55	253.78	203.36	288.34	351.52	162.38
Merged-chr3-137951971-1	chr3	137951471	137952471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29578.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	134.43	101.83	104.52	148.44	97.5	110.92	178.5	190.57	69.95
Merged-chr4-95161410-3	chr4	95160852	95161852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-109130.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	211.66	194.45	121.17	205.11	142.29	138.25	211.24	202.95	136.15
Merged-chr2-68825587-3	chr2	68825101	68826101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35840.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	37.76	26.73	24.05	28.34	16.79	32.96	34.85	29.18	21.23
Merged-chr16-13819258-3	chr16	13818773	13819773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	22.0	NM_001346111	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	243.69	238.23	206.26	147.09	185.2	180.05	242.92	266.18	128.03
Merged-chr11-96880482-2	chr11	96879994	96880994	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	30101.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	8.01	2.3	7.4	119.43	88.64	70.73	160.54	212.68	62.45
Merged-chr2-19351995-3	chr2	19351471	19352471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126563, exon 4 of 4)	non-coding (NR_126563, exon 4 of 4)	7654.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	56.06	59.44	22.2	55.33	44.32	42.6	53.87	62.35	32.48
Merged-chr13-95019525-3	chr13	95019018	95020018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172590, intron 12 of 12)	intron (NM_172590, intron 12 of 12)	43174.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	21.74	20.74	24.05	26.31	20.99	33.76	24.29	13.71	14.99
Merged-chr8-26169327-3	chr8	26168825	26169825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11156.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	12.59	6.91	1.85	8.1	3.27	3.22	3.17	1.77	5.0
Merged-chr4-43262949-3	chr4	43262368	43263368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 38 of 39)	intron (NM_001081413, intron 38 of 39)	-4291.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	91.53	82.02	90.65	87.71	47.12	56.27	84.49	50.85	46.22
Merged-chr2-30982105-3	chr2	30981599	30982599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144885)	promoter-TSS (NM_144885)	-158.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	129.28	94.92	77.7	117.4	92.37	88.42	120.41	96.39	58.08
Merged-chr18-36749278-3	chr18	36748773	36749773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011879, exon 7 of 20)	exon (NM_011879, exon 7 of 20)	4617.0	NM_011879	24010.0	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	88.1	98.15	68.45	77.59	75.57	81.18	82.38	89.32	64.33
Merged-chr15-82244551-3	chr15	82244033	82245033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080158)	promoter-TSS (NM_001080158)	-197.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	12.01	14.75	24.97	18.22	14.0	14.47	11.62	15.48	3.75
Merged-chr6-54082735-3	chr6	54082205	54083205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	42773.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	51.48	58.06	37.0	68.82	34.99	47.42	43.3	48.64	37.47
Merged-chr16-57189705-3	chr16	57189213	57190213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 10 of 17)	intron (NM_026254, intron 10 of 17)	11758.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	91.53	113.81	51.8	91.09	85.37	79.58	54.92	60.58	46.84
Merged-chr4-141735103-3	chr4	141734601	141735601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11574.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	17.16	22.58	27.75	12.82	16.79	26.53	20.07	19.9	19.36
Merged-chr1-37474828-3	chr1	37474341	37475341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13764.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	198.5	220.25	123.94	203.09	197.8	159.95	200.68	291.39	156.76
Merged-chr7-47080965-3	chr7	47080460	47081460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	2264.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	61.21	53.45	24.97	47.9	33.59	49.83	65.48	48.64	27.48
Merged-chr7-125444900-3	chr7	125444367	125445367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029842, intron 1 of 7)	CpG	247.0	NM_029842	77035.0	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	63.5	123.95	132.27	103.23	106.36	163.17	133.08	122.48	98.68
Merged-chr13-95888373-3	chr13	95887854	95888854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	B1F|SINE|Alu	3568.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	198.5	145.15	90.65	285.41	201.53	184.07	226.02	212.24	128.03
Merged-chr4-139352487-3	chr4	139351971	139352971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039200)	promoter-TSS (NM_001039200)	105.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	136.72	126.25	111.92	85.01	107.3	139.06	134.14	98.6	63.08
Merged-chr18-38418871-3	chr18	38418391	38419391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-16.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	353.53	267.25	244.19	367.72	241.18	203.36	297.84	215.78	171.75
Merged-chr11-107012384-3	chr11	107011881	107012881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12856.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	384.99	365.4	243.26	333.99	284.1	310.26	329.53	466.49	196.1
Merged-chr11-97315733-3	chr11	97315223	97316223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	7.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	91.53	89.85	52.72	134.94	191.27	125.39	109.84	150.34	57.46
Merged-chr13-107756493-3	chr13	107755997	107756997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	69100.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	85.81	70.5	39.77	92.44	63.45	50.64	58.09	56.16	48.09
Merged-chr18-35730479-3	chr18	35729973	35730973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033168, exon 2 of 2)	3' UTR (NM_001033168, exon 2 of 2)	3484.0	NM_001033168	73449.0	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	SMIM33	RIKEN cDNA 1700066B19 gene	protein-coding	57.21	38.71	43.47	57.35	36.85	51.44	66.54	63.23	26.85
Merged-chr10-62183251-3	chr10	62182748	62183748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10979.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	10.87	3.69	7.4	4.05	2.33	3.22	5.28	1.77	3.75
Merged-chr7-132859267-3	chr7	132858787	132859787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	62.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	195.64	242.37	213.66	168.0	230.92	248.37	235.53	225.51	194.85
Merged-chr15-31565307-3	chr15	31564802	31565802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3531.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	14.3	19.81	20.35	25.64	41.52	43.4	11.62	17.69	13.74
Merged-chr8-92818344-3	chr8	92817843	92818843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8954.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	5.72	4.15	6.47	2.7	2.8	4.82	7.39	1.77	1.25
Merged-chr8-72240007-3	chr8	72239475	72240475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	-43.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	117.84	125.33	98.97	105.93	107.76	89.22	111.96	103.47	90.56
Merged-chr5-86804687-3	chr5	86804184	86805184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177680, intron 1 of 16)	CpG	418.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	489.68	497.65	382.93	425.75	489.83	372.15	468.95	390.43	269.17
Merged-chr15-8994780-7	chr15	8994288	8995288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	26839.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	73.79	86.17	64.75	64.1	66.24	83.59	65.48	54.39	58.08
Merged-chr4-150132853-1	chr4	150132353	150133353	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 6 of 13)	intron (NM_019741, intron 6 of 13)	13509.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	6.29	0.92	3.7	5.4	6.06	3.22	15.84	8.4	5.0
Merged-chr9-118040930-3	chr9	118040448	118041448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001048146, exon 1 of 7)	5' UTR (NM_001048146, exon 1 of 7)	426.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	407.87	495.8	417.15	416.98	436.65	376.17	455.22	529.72	254.81
Merged-chr10-29231831-3	chr10	29231332	29232332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20189.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	7.44	10.14	7.4	14.17	12.13	5.63	16.9	7.96	8.74
Merged-chr3-79568090-3	chr3	79567523	79568523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162999)	promoter-TSS (NM_001162999)	-169.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	274.01	182.47	164.64	294.18	201.53	151.92	261.93	203.84	104.92
Merged-chr5-130222320-3	chr5	130221811	130222811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027854)	promoter-TSS (NM_027854)	-24.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	316.35	296.75	259.91	339.38	264.04	211.4	295.73	248.94	129.28
Merged-chr1-36262309-3	chr1	36261813	36262813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	11112.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	69.79	60.82	27.75	46.56	50.38	53.85	63.37	64.56	46.84
Merged-chr13-20151750-3	chr13	20151256	20152256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	61249.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	48.05	51.15	44.4	67.47	55.05	61.09	40.14	49.52	43.09
Merged-chr1-186706467-1	chr1	186705967	186706967	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-478.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	4.58	3.23	1.85	7.42	0.93	2.41	4.22	2.21	0.62
Merged-chr11-93886062-1	chr11	93885562	93886562	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-145.0	NM_001346525	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	473.09	332.69	320.03	384.59	325.16	276.5	420.36	359.48	187.36
Merged-chr19-5846749-3	chr19	5846235	5847235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	536.01	387.06	295.06	539.77	363.88	272.48	431.98	465.16	184.86
Merged-chr3-95950875-2	chr3	95950387	95951387	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21630.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	597.22	520.23	274.71	593.75	487.5	365.72	493.24	552.71	252.31
Merged-chr11-115071974-3	chr11	115071532	115072532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9993.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	248.27	179.25	157.24	264.49	158.15	161.56	165.82	186.59	137.4
Merged-chr14-45251801-3	chr14	45251302	45252302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 3 of 6)	Lx7|LINE|L1	32085.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	13.73	22.58	20.35	19.57	14.46	23.31	21.12	37.58	16.24
Merged-chr16-18412189-3	chr16	18411645	18412645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	1349.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	93.24	112.89	101.74	110.65	121.29	120.57	80.27	89.32	46.22
Merged-chr2-129607125-3	chr2	129606640	129607640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	11678.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	25.74	31.33	44.4	35.76	22.86	42.6	25.35	22.11	20.61
Merged-chr3-65929561-3	chr3	65929083	65930083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28666.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	77.8	65.89	43.47	83.66	69.04	50.64	72.88	68.54	31.23
Merged-chr9-115314770-1	chr9	115314270	115315270	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4349.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	2.86	0.92	0.0	0.0	1.87	0.8	46.47	53.5	40.59
Merged-chr9-114933999-3	chr9	114933490	114934490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175380)	promoter-TSS (NM_175380)	-3.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	22.88	21.2	24.97	31.71	27.99	28.94	59.15	37.58	20.61
Merged-chr2-19627282-3	chr2	19626841	19627841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30556.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	93.82	99.53	53.65	83.66	72.78	60.28	97.17	122.04	73.69
Merged-chr7-100372040-3	chr7	100371535	100372535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	-139.0	NM_028292	72590.0	Mm.177502	NM_028292	ENSMUSG00000030718	Ppme1	1110069N17Rik|2700017M01Rik|PME-1|Pme1	protein phosphatase methylesterase 1	protein-coding	136.15	119.8	91.57	128.2	123.62	102.08	117.24	122.92	69.95
Merged-chr1-67398211-2	chr1	67397724	67398724	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	275197.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	9.72	5.07	5.55	41.83	32.19	38.58	33.8	41.12	19.98
Merged-chr7-143287460-3	chr7	143286973	143287973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	9074.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	33.18	36.4	42.55	28.34	21.93	26.53	33.8	37.14	26.85
Merged-chr7-4498368-3	chr7	4497817	4498817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	3363.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	96.68	56.68	29.6	66.12	33.12	33.76	52.81	42.89	15.61
Merged-chr1-58423094-3	chr1	58422587	58423587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042634, intron 1 of 12)	intron (NM_001042634, intron 1 of 12)	1001.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	239.69	411.48	196.09	219.28	339.15	180.05	221.8	329.41	174.24
Merged-chr2-91984751-3	chr2	91984282	91985282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 10 of 11)	C-rich|Low_complexity|Low_complexity	-21219.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	62.35	41.01	36.07	66.12	41.52	60.28	84.49	68.54	51.21
Merged-chr16-36663698-3	chr16	36663199	36664199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	2378.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	348.38	329.46	167.42	273.94	303.7	164.78	247.15	367.88	115.54
Merged-chr11-86757036-3	chr11	86756558	86757558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	509.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	462.22	427.61	416.23	480.4	413.33	335.18	436.2	513.8	296.03
Merged-chr8-119798371-3	chr8	119797865	119798865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19949.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	20.02	17.97	12.95	14.84	14.46	33.76	15.84	17.24	11.87
Merged-chr18-17728817-3	chr18	17728323	17729323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147833.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	31.46	24.42	17.57	33.74	37.32	22.51	26.4	23.43	33.1
Merged-chr3-122293186-3	chr3	122292697	122293697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030439)	TTS (NR_030439)	506.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	190.49	180.63	134.12	143.71	143.22	92.44	117.24	88.88	107.42
Merged-chr17-34972287-4	chr17	34971756	34972756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-100.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	158.46	143.3	88.8	155.86	113.83	86.01	103.51	130.44	61.83
Merged-chr8-94666674-3	chr8	94666184	94667184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024191)	promoter-TSS (NM_024191)	84.0	NM_024191	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	16.02	12.44	21.27	51.28	32.19	12.86	27.46	19.01	6.87
Merged-chr5-34369782-3	chr5	34369296	34370296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243123)	promoter-TSS (NM_001243123)	-137.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	114.98	90.31	123.94	134.94	78.84	93.24	101.39	80.47	64.95
Merged-chr5-121397878-3	chr5	121397432	121398432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172722)	promoter-TSS (NM_172722)	-50.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	104.69	107.82	110.07	92.44	86.77	73.14	130.97	141.94	77.44
Merged-chr11-119267923-3	chr11	119267427	119268427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159324)	promoter-TSS (NM_001159324)	-36.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	358.11	311.95	118.39	382.56	389.53	235.51	288.34	313.5	98.68
Merged-chr9-7734542-3	chr9	7734072	7735072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29505.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	11.44	12.44	9.25	6.75	4.2	0.0	21.12	11.94	9.99
Merged-chr4-125124941-3	chr4	125124422	125125422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2959.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	221.38	169.57	252.51	199.72	134.35	175.23	239.75	223.29	123.66
Merged-chr17-69201551-3	chr17	69201034	69202034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	B4A|SINE|B4	42178.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	258.0	263.11	172.04	226.03	191.27	180.85	197.51	265.74	136.77
Merged-chr11-69097644-3	chr11	69097150	69098150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1299.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	504.55	331.3	208.11	474.33	314.89	278.91	330.59	326.76	186.73
Merged-chr2-172440494-3	chr2	172439981	172440981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025542)	promoter-TSS (NM_025542)	-97.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	243.12	252.05	153.54	286.75	312.09	327.14	168.99	197.21	119.28
Merged-chr12-80463181-3	chr12	80462737	80463737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133798, exon 1 of 9)	5' UTR (NM_133798, exon 1 of 9)	142.0	NM_133798	97827.0	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	17.16	17.97	16.65	30.36	28.46	41.8	33.8	26.97	33.72
Merged-chr10-53927685-1	chr10	53927185	53928185	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	MTD|LTR|ERVL-MaLR	148111.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	81.23	64.05	44.4	114.7	82.11	69.13	57.03	48.2	31.85
Merged-chr1-191071326-2	chr1	191070843	191071843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8322.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	249.42	227.63	167.42	189.6	163.28	155.13	283.06	327.65	138.65
Merged-chr7-39655333-1	chr7	39654833	39655833	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	137567.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.0	0.0	0.0	1.35	0.0	0.8	30.63	43.77	36.22
Merged-chr2-90917731-3	chr2	90917226	90918226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025576, exon 1 of 5)	exon (NM_025576, exon 1 of 5)	324.0	NM_025576	66461.0	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	173.9	173.25	153.54	207.14	170.28	215.42	224.97	160.06	145.51
Merged-chr19-41345661-3	chr19	41345156	41346156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39414.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	436.48	299.97	252.51	357.6	229.99	275.7	398.18	373.19	252.93
Merged-chr7-63937364-1	chr7	63936864	63937864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	1551.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	364.4	366.32	300.61	325.21	253.31	228.28	335.87	356.39	189.23
Merged-chr10-121473999-5	chr10	121473481	121474481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	B1_Mur2|SINE|Alu	2269.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	158.46	121.19	62.9	127.52	90.5	73.14	85.55	99.49	40.59
Merged-chr4-134469056-3	chr4	134468562	134469562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019641, intron 1 of 4)	CpG	742.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	13.16	9.22	14.8	16.87	7.0	9.65	26.4	14.59	15.61
Merged-chr4-149782594-3	chr4	149782102	149783102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8335.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	205.94	117.04	106.37	184.2	84.9	136.64	205.96	179.96	94.93
Merged-chr17-62627749-3	chr17	62627241	62628241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	253576.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	13.73	18.43	12.02	20.24	16.33	12.86	8.45	6.19	15.61
Merged-chr3-22076210-3	chr3	22075684	22076684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	-468.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	50.91	35.48	38.85	41.83	32.66	41.8	66.54	38.03	44.97
Merged-chr5-43279935-3	chr5	43279436	43280436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177379, intron 7 of 10)	intron (NM_001177379, intron 7 of 10)	-44582.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	11.44	20.27	1.85	12.14	20.99	12.86	33.8	34.05	10.62
Merged-chr15-36792586-3	chr15	36792101	36793101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253806, intron 1 of 5)	CpG	-1669.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	209.94	239.15	240.49	201.74	190.34	237.92	180.61	206.93	163.63
Merged-chr4-62502266-3	chr4	62501764	62502764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-64.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	264.86	239.61	147.99	235.48	184.27	184.87	80.27	106.56	56.83
Merged-chr2-164458524-3	chr2	164458031	164459031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2440.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	67.5	52.07	49.95	49.25	24.72	47.42	50.7	48.64	38.1
Merged-chr9-124126583-3	chr9	124126093	124127093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	5050.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	168.18	217.49	123.94	185.55	209.0	148.7	193.28	271.49	138.65
Merged-chr3-19627249-3	chr3	19626758	19627758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17202.0	NM_001081281	381485.0	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	23.45	29.49	21.27	37.11	33.12	24.11	29.57	31.39	43.09
Merged-chr6-34995479-3	chr6	34994974	34995974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR52|LTR|ERVL	-17475.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	5.15	8.75	0.0	11.47	7.0	0.0	10.56	5.31	6.25
Merged-chr13-92722577-1	chr13	92722077	92723077	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72241.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	6.86	3.69	0.0	4.72	3.73	0.8	27.46	15.03	16.24
Merged-chr6-136808202-3	chr6	136807690	136808690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-58.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	208.23	203.67	216.44	215.23	196.87	150.31	189.06	201.19	146.14
Merged-chr4-124705279-3	chr4	124704726	124705726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	4527.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	48.05	43.31	73.07	62.07	41.99	79.58	61.26	65.44	63.7
Merged-chr9-124053733-3	chr9	124053230	124054230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31759.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	45.19	65.89	48.1	45.88	53.18	77.97	54.92	61.46	46.84
Merged-chr17-71669709-3	chr17	71669203	71670203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3558.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	13.73	9.68	5.55	8.77	8.4	8.04	11.62	9.73	13.12
Merged-chr6-128143660-3	chr6	128143162	128144162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175414)	promoter-TSS (NM_175414)	-84.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	41.19	31.33	37.0	29.01	27.52	33.76	50.7	35.37	31.23
Merged-chr5-129006410-3	chr5	129005907	129006907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	B3|SINE|B2	2165.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	34.9	27.65	31.45	51.95	42.92	53.85	62.31	52.62	41.84
Merged-chr15-25680878-3	chr15	25680386	25681386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	ORR1D2|LTR|ERVL-MaLR	58336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	36.04	37.78	36.07	33.06	23.33	16.88	59.15	50.85	21.23
Merged-chr6-124730357-2	chr6	124729863	124730863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	2791.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	92.67	87.55	92.5	120.1	69.04	135.04	104.56	125.58	78.07
Merged-chr12-31997061-3	chr12	31996573	31997573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	MamRep605|LTR?|LTR?	-46828.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	32.04	33.18	0.0	38.46	24.26	14.47	35.91	38.91	27.48
Merged-chr10-66928316-3	chr10	66927817	66928817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7933.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	36.61	14.75	7.4	44.53	16.33	20.9	28.52	20.78	14.36
Merged-chr6-42396241-3	chr6	42395747	42396747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3991.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	274.01	234.08	114.69	246.95	174.47	124.59	176.38	235.23	120.53
Merged-chr19-46760936-1	chr19	46760436	46761436	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-673.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	184.2	197.68	155.39	191.62	241.65	184.07	176.38	188.81	101.17
Merged-chr9-44268655-3	chr9	44268131	44269131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-32.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	78.37	65.89	48.1	72.87	43.85	63.5	68.65	39.8	49.34
Merged-chr8-71464809-3	chr8	71464312	71465312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053162)	promoter-TSS (NM_053162)	-114.0	NM_053162	94065.0	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	70.36	51.15	54.57	70.17	37.32	77.97	94.0	80.92	44.34
Merged-chr11-106193681-3	chr11	106193159	106194159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028126)	promoter-TSS (NM_028126)	-56.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	108.69	101.83	112.84	92.44	74.17	94.04	107.73	113.64	77.44
Merged-chr2-32969581-3	chr2	32969090	32970090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	6289.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	86.38	69.58	44.4	126.85	84.44	81.18	94.0	118.06	69.32
Merged-chr13-98944756-3	chr13	98944280	98945280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18396.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	181.91	230.85	110.07	152.49	152.08	129.41	228.14	208.7	109.29
Merged-chr16-20301926-3	chr16	20301428	20302428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005767, intron 1 of 9)	intron (NM_001005767, intron 1 of 9)	434.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	87.52	73.73	88.8	95.81	76.97	114.94	96.11	80.47	68.7
Merged-chr8-3308505-3	chr8	3308005	3309005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-28888.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	66.36	73.26	61.97	49.93	41.05	71.54	40.14	53.06	34.97
Merged-chr4-3679750-3	chr4	3679254	3680254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	1633.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	186.49	195.37	127.64	166.66	109.63	147.9	228.14	255.13	176.12
Merged-chrX-139684965-3	chrX	139684444	139685444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081499)	promoter-TSS (NM_001081499)	-52.0	NM_001081499	245638.0	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	26.89	38.71	13.87	32.39	28.46	36.97	31.69	37.14	19.98
Merged-chr18-38352252-3	chr18	38351753	38352753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-13260.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	13.16	17.51	11.1	32.39	21.93	33.76	27.46	32.72	16.24
Merged-chr15-79546746-3	chr15	79546240	79547240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199080)	promoter-TSS (NM_199080)	1.0	NM_001040187	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	353.53	451.11	306.16	340.06	350.81	267.66	309.46	363.46	216.09
Merged-chr1-72226027-3	chr1	72225525	72226525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13711.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	16.59	13.36	3.7	11.47	8.86	24.11	16.9	15.92	8.74
Merged-chr10-128804489-3	chr10	128803961	128804961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178066)	promoter-TSS (NM_178066)	-14.0	NM_178066	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	204.8	172.33	118.39	207.14	132.95	191.3	174.27	175.54	84.31
Merged-chr3-51415919-3	chr3	51415390	51416390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-126.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	359.82	366.78	252.51	271.24	297.17	278.91	302.07	317.92	203.6
Merged-chr9-7828875-3	chr9	7828316	7829316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 2 of 7)	RLTR24B_MM|LTR|ERV1	7990.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	31.46	35.02	27.75	23.62	12.6	14.47	28.52	28.3	30.6
Merged-chr13-67772493-1	chr13	67771993	67772993	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7200.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	2.29	2.3	0.0	7.42	3.27	0.0	28.52	28.74	9.37
Merged-chr8-126684168-3	chr8	126683668	126684668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90732.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.87	11.06	7.4	20.24	12.6	4.82	12.67	7.52	9.99
Merged-chr8-71611047-3	chr8	71610585	71611585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	61.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	259.14	182.01	167.42	260.44	229.99	183.26	218.63	229.48	114.29
Merged-chr4-3695740-3	chr4	3695259	3696259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	MTEb|LTR|ERVL-MaLR	17638.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	57.78	40.55	32.37	61.4	32.66	43.4	73.93	44.66	48.71
Merged-chr9-64703046-3	chr9	64702515	64703515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	34741.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	53.77	66.81	44.4	94.46	49.45	72.34	34.85	66.33	58.71
Merged-chr1-177983265-3	chr1	177982775	177983775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8123.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	85.24	120.26	84.17	116.05	97.03	94.85	141.53	137.07	55.58
Merged-chr16-36598486-3	chr16	36597993	36598993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36359.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	37.18	28.57	26.82	30.36	21.46	12.06	45.42	52.62	19.98
Merged-chr9-55208970-3	chr9	55208460	55209460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028049)	promoter-TSS (NM_028049)	25.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	73.79	93.54	51.8	109.98	107.76	87.61	105.62	78.26	44.97
Merged-chr10-13986712-3	chr10	13986174	13987174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	20295.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	75.51	62.21	38.85	112.0	80.71	82.79	90.83	97.72	59.95
Merged-chr2-181536611-3	chr2	181536112	181537112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	MYSERV6-int|LTR|ERVK	16127.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	105.26	110.59	78.62	128.87	90.5	90.02	114.07	129.55	74.32
Merged-chr11-72782295-3	chr11	72781796	72782796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024926, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	13543.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	30.32	23.96	18.5	24.96	19.59	34.56	26.4	22.55	18.11
Merged-chr13-21362850-3	chr13	21362341	21363341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016684)	promoter-TSS (NM_016684)	21.0	NM_016684	22758.0	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	30.89	41.93	20.35	35.76	35.45	45.82	41.19	42.45	28.1
Merged-chr10-83634688-3	chr10	83634189	83635189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	13975.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	20.59	14.75	9.25	25.64	7.0	6.43	14.79	15.48	11.87
Merged-chr12-36156899-3	chr12	36156387	36157387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025840)	promoter-TSS (NM_025840)	-62.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	92.1	96.3	72.15	129.55	115.69	124.59	118.29	95.07	39.35
Merged-chr18-23869155-3	chr18	23868650	23869650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	65180.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	88.67	89.39	49.02	265.16	279.91	196.12	182.72	256.01	84.94
Merged-chr4-119126088-3	chr4	119125579	119126579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	17334.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	74.37	59.44	67.52	47.9	34.52	45.82	89.78	80.92	50.59
Merged-chr19-9939066-3	chr19	9938567	9939567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39534.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	181.91	115.2	54.57	220.63	154.88	116.55	140.47	127.79	63.08
Merged-chr3-144044644-3	chr3	144044155	144045155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	157677.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	19.45	29.03	12.95	29.01	13.53	30.54	22.18	12.38	24.98
Merged-chr5-117319207-3	chr5	117318694	117319694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	-72.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	24.6	23.5	12.95	43.18	31.72	36.97	26.4	15.92	16.86
Merged-chrX-164941733-3	chrX	164941236	164942236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 13 of 14)	L2a|LINE|L2	38639.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	36.61	41.93	41.62	22.94	23.33	45.01	32.74	40.68	36.85
Merged-chr8-84004880-3	chr8	84004401	84005401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106191)	promoter-TSS (NR_106191)	-727.0	NR_106191	102466886.0		NR_106191	ENSMUSG00000098823	Mir8111	Gm27823|mmu-mir-8111	microRNA 8111	ncRNA	114.98	105.06	110.99	109.3	99.37	127.8	135.19	164.49	56.21
Merged-chr7-104507901-3	chr7	104507408	104508408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167828)	promoter-TSS (NM_001167828)	-59.0	NM_001167828	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	55.49	68.2	54.57	50.6	54.11	44.21	72.88	96.83	62.45
Merged-chr15-97361168-3	chr15	97360680	97361680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-113893.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	169.33	173.25	158.17	223.33	208.06	205.77	179.55	210.03	83.06
Merged-chr1-131357929-3	chr1	131357420	131358420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-78357.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	67.5	57.6	47.17	97.16	38.72	56.27	63.37	51.29	44.34
Merged-chr1-86430214-3	chr1	86429716	86430716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3887.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	22.31	17.51	30.52	16.19	9.33	22.51	7.39	8.4	16.86
Merged-chr2-18056970-3	chr2	18056481	18057481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	-865.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	278.59	272.32	177.59	184.2	189.4	180.85	237.64	205.17	133.02
Merged-chr7-142342377-3	chr7	142341847	142342847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	L1MB3|LINE|L1	29912.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	136.72	97.23	76.77	22.94	11.2	13.66	70.76	87.99	80.56
Merged-chr4-102572262-3	chr4	102571765	102572765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	2205.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	239.12	195.83	152.62	198.37	111.5	122.18	191.17	179.52	122.41
Merged-chrX-74278162-3	chrX	74277667	74278667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172154, intron 1 of 7)	PB1D7|SINE|Alu	3569.0	NM_027109	69537.0	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	37.76	41.47	32.37	29.01	20.06	46.62	19.01	33.16	33.1
Merged-chr11-88048362-3	chr11	88047858	88048858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001078167, intron 1 of 2)	CpG	985.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	221.38	269.1	246.96	199.04	211.33	229.08	270.38	256.46	196.1
Merged-chr5-66112244-3	chr5	66111748	66112748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-14069.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	170.47	164.96	96.2	184.2	123.62	117.35	115.12	160.06	94.93
Merged-chr2-124705093-3	chr2	124704605	124705605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51524.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	136.15	188.46	168.34	161.26	126.89	146.29	201.73	154.76	124.28
Merged-chr7-27689381-3	chr7	27688864	27689864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112731)	promoter-TSS (NM_001112731)	24.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	28.03	23.04	26.82	31.71	14.0	42.6	30.63	16.36	12.49
Merged-chr10-60003137-3	chr10	60002626	60003626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347451)	promoter-TSS (NM_001347451)	9.0	NM_001347451	52717.0	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	179.05	182.93	133.19	157.88	153.01	172.81	186.94	165.81	129.28
Merged-chr3-69669353-1	chr3	69668853	69669853	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52702.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	58.35	65.89	37.0	67.47	49.92	75.56	78.16	114.52	64.33
Merged-chr12-54820877-3	chr12	54820420	54821420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25258.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	66.93	72.34	49.02	51.28	41.52	65.91	76.05	66.33	40.59
Merged-chr6-135240589-3	chr6	135240091	135241091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080552, intron 4 of 5)	intron (NM_001080552, intron 4 of 5)	7293.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	38.9	34.56	23.12	49.93	37.32	36.17	38.02	34.05	27.48
Merged-chr7-113369361-3	chr7	113368852	113369852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-13.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	79.52	60.82	79.55	63.42	68.58	58.68	89.78	84.45	53.08
Merged-chr16-43363130-3	chr16	43362654	43363654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	57042.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	105.26	93.08	78.62	89.06	57.38	71.54	85.55	95.95	66.2
Merged-chr18-66002719-3	chr18	66002212	66003212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172062)	promoter-TSS (NM_001172062)	-77.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	16.02	22.58	14.8	23.62	14.46	36.97	27.46	13.27	6.25
Merged-chr2-73455792-3	chr2	73455290	73456290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1901.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	135.0	73.73	68.45	106.61	41.99	68.32	121.46	85.34	74.32
Merged-chr15-96284967-1	chr15	96284467	96285467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-2555.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	324.35	253.89	219.21	305.65	225.79	195.32	247.15	211.36	172.99
Merged-chr3-20423088-3	chr3	20422573	20423573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55896.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	25.17	40.55	40.7	36.43	47.58	44.21	50.7	45.1	34.97
Merged-chr16-3895680-3	chr16	3895190	3896190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153801, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	11071.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	87.52	109.21	99.89	53.98	51.32	83.59	72.88	69.42	81.81
Merged-chr2-75985296-3	chr2	75984811	75985811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3344.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	5.72	3.69	5.55	7.42	3.73	4.82	5.28	4.42	2.5
Merged-chr15-102073753-3	chr15	102073238	102074238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145625)	promoter-TSS (NM_145625)	-35.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	75.51	107.82	78.62	101.88	99.83	94.85	124.63	118.5	67.45
Merged-chr3-97680799-3	chr3	97680302	97681302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9760.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	28.6	41.01	51.8	44.53	36.85	49.03	51.75	27.86	26.23
Merged-chr12-104214424-3	chr12	104213972	104214972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009251)	promoter-TSS (NM_009251)	18.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	37.18	39.17	60.12	13.49	14.0	8.04	54.92	52.62	19.98
Merged-chr13-30696092-3	chr13	30695600	30696600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	36041.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	92.1	153.9	53.65	86.36	93.3	71.54	77.1	76.94	52.46
Merged-chr11-103017145-3	chr11	103016661	103017661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026551)	promoter-TSS (NM_026551)	-14.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	62.35	59.44	66.6	82.99	83.51	77.16	87.66	103.47	36.22
Merged-chr6-121338331-3	chr6	121337834	121338834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144512)	TTS (NM_144512)	-4742.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	2.86	1.38	5.55	2.7	1.87	0.8	1.06	0.88	1.87
Merged-chr4-103197535-1	chr4	103197035	103198035	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356276, intron 8 of 11)	intron (NM_001356276, intron 8 of 11)	17641.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	9.72	10.6	18.5	18.22	7.46	14.47	7.39	9.73	2.5
Merged-chr1-191821458-3	chr1	191820944	191821944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010892)	promoter-TSS (NM_010892)	-29.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	17.16	13.82	6.47	22.27	11.2	16.88	21.12	12.82	7.49
Merged-chr1-167266616-3	chr1	167266113	167267113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	MER21B|LTR|ERVL	18514.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	3.43	5.07	1.85	6.07	2.8	3.22	2.11	1.33	2.5
Merged-chr7-35396883-3	chr7	35396344	35397344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178643)	promoter-TSS (NM_178643)	-77.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	31.46	50.69	15.72	41.83	55.98	30.54	26.4	26.09	32.48
Merged-chr1-165461128-3	chr1	165460621	165461621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-87.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	330.65	352.04	262.69	296.88	297.63	222.65	264.05	363.9	172.99
Merged-chr16-42876227-2	chr16	42875716	42876716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-454.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	199.65	143.3	160.02	195.67	136.22	95.65	252.43	164.49	94.93
Merged-chr12-77833606-1	chr12	77833106	77834106	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-393049.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.0	5.07	16.65	4.05	4.2	20.9	4.22	6.19	11.24
Merged-chr8-81767193-3	chr8	81766712	81767712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424650.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	40.62	28.11	13.87	31.04	36.85	30.54	11.62	19.9	17.49
Merged-chr8-26118756-3	chr8	26118252	26119252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357292)	promoter-TSS (NM_001357292)	472.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	162.46	181.09	125.79	186.22	241.18	157.54	170.05	173.33	130.53
Merged-chr11-118145920-3	chr11	118145429	118146429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16710.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	287.74	246.06	113.77	383.24	322.82	208.18	251.37	331.18	133.65
Merged-chr1-135430528-3	chr1	135430012	135431012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153774)	promoter-TSS (NM_153774)	-13.0	NM_001357578	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	73.79	61.75	73.07	59.38	52.25	59.48	77.1	51.73	34.97
Merged-chr10-67695005-3	chr10	67694509	67695509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123050.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	61.21	74.19	45.32	92.44	60.18	58.68	58.09	71.63	58.71
Merged-chr7-127422025-3	chr7	127421512	127422512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	22.0	NM_026999	69234.0	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	49.77	47.46	20.35	56.0	47.12	57.07	51.75	57.48	33.72
Merged-chr5-122050546-3	chr5	122050023	122051023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312908)	promoter-TSS (NM_001312908)	-672.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	49.2	47.46	58.27	70.85	41.52	49.83	32.74	26.53	16.24
Merged-chr8-92849867-3	chr8	92849359	92850359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-5474.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	16.59	8.75	7.4	11.47	6.06	13.66	23.24	38.47	18.74
Merged-chr2-157737347-3	chr2	157736825	157737825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025680)	promoter-TSS (NM_025680)	-76.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	35.47	30.87	31.45	29.01	35.45	24.92	41.19	26.97	14.99
Merged-chr16-57396447-3	chr16	57395960	57396960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	43183.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.01	9.68	12.95	12.14	1.4	6.43	5.28	7.96	9.99
Merged-chr12-84219421-3	chr12	84218923	84219923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-542.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	207.08	136.85	116.54	211.19	151.15	114.14	104.56	94.18	69.32
Merged-chr9-90054447-3	chr9	90053942	90054942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007801, exon 1 of 12)	5' UTR (NM_007801, exon 1 of 12)	175.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	204.8	214.26	201.64	203.76	193.13	211.4	275.66	271.05	179.24
Merged-chr2-84505203-1	chr2	84504703	84505703	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046046, intron 1 of 2)	Lx|LINE|L1	1670.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	16.59	11.06	9.25	16.19	17.73	7.23	55.98	74.28	37.47
Merged-chr5-122821367-3	chr5	122820864	122821864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021505)	promoter-TSS (NM_021505)	-22.0	NM_001289519	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	108.12	100.45	118.39	111.33	100.3	96.45	102.45	121.15	96.8
Merged-chr9-32668213-3	chr9	32667720	32668720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27822.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	22.31	35.94	11.1	41.16	37.79	24.11	19.01	23.43	19.36
Merged-chr7-16313648-1	chr7	16313148	16314148	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133234, exon 3 of 4)	exon (NM_133234, exon 3 of 4)	4065.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	393.0	371.85	322.81	435.87	345.22	294.19	348.54	446.15	225.45
Merged-chr15-68258167-3	chr15	68257655	68258655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 1 of 13)	intron (NR_152182, intron 1 of 13)	701.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	344.95	328.08	246.04	378.52	343.35	298.21	373.89	385.13	198.6
Merged-chr12-91751504-3	chr12	91751014	91752014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	Lx7|LINE|L1	34922.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	54.92	46.54	32.37	39.13	36.39	31.35	31.69	32.72	23.73
Merged-chrX-10216776-3	chrX	10216279	10217279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177953)	promoter-TSS (NM_001177953)	16.0	NM_001177954	19893.0	Mm.247556	NM_011285	ENSMUSG00000031174	Rpgr	Rd9|Rp3h	retinitis pigmentosa GTPase regulator	protein-coding	36.61	47.46	31.45	45.88	41.05	20.9	29.57	25.65	8.74
Merged-chr8-27030545-3	chr8	27030036	27031036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153592, intron 6 of 11)	MTD|LTR|ERVL-MaLR	6737.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	100.11	64.51	63.82	91.76	64.84	49.83	81.33	70.75	32.48
Merged-chr3-9828770-3	chr3	9828254	9829254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	4925.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	108.12	78.79	54.57	100.53	61.58	105.3	130.97	143.7	101.8
Merged-chr6-134921614-3	chr6	134921094	134922094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009875, intron 1 of 2)	intron (NM_009875, intron 1 of 2)	1193.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	226.53	242.37	215.51	221.31	170.28	204.97	224.97	266.18	169.25
Merged-chr10-127311263-3	chr10	127310776	127311776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003913, intron 1 of 20)	intron (NM_001003913, intron 1 of 20)	510.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	209.37	107.36	61.05	167.33	103.1	85.2	156.32	158.3	76.19
Merged-chr7-63912148-3	chr7	63911669	63912669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4688.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	242.55	203.21	179.44	230.08	167.94	244.35	258.77	298.46	158.01
Merged-chr10-13946701-3	chr10	13946206	13947206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19369.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	94.96	68.2	42.55	103.23	59.71	63.5	126.74	76.05	62.45
Merged-chr15-81858743-3	chr15	81858240	81859240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-414.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	311.2	318.86	202.56	312.39	277.57	302.22	316.86	382.92	227.33
Merged-chr4-128654681-3	chr4	128654172	128655172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195130)	promoter-TSS (NM_001195130)	-30.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	96.68	86.17	72.15	101.88	74.17	85.2	90.83	66.77	41.84
Merged-chr16-95827611-3	chr16	95827121	95828121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	71092.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	62.35	22.58	18.5	50.6	27.06	40.99	69.71	29.63	39.97
Merged-chr8-79399468-3	chr8	79398968	79399968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008539)	promoter-TSS (NM_008539)	0.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	192.78	149.29	157.24	209.16	146.02	159.15	163.71	156.53	129.28
Merged-chr14-55681958-3	chr14	55681452	55682452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145705)	promoter-TSS (NM_145705)	-135.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	290.03	255.27	159.09	224.68	211.33	141.47	189.06	221.97	151.14
Merged-chr5-113635303-3	chr5	113634802	113635802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	8301.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	190.49	230.85	154.47	241.55	192.67	219.43	306.29	300.23	143.02
Merged-chr10-127030830-3	chr10	127030340	127031340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025537)	promoter-TSS (NM_025537)	-26.0	NM_025537	66399.0	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	39.47	26.73	24.05	45.88	40.12	49.03	42.25	37.58	9.99
Merged-chr16-88480339-3	chr16	88479845	88480845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26633.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	17.16	10.14	7.4	27.66	21.93	15.27	15.84	10.17	16.24
Merged-chr8-71310581-3	chr8	71310063	71311063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	RLTR17|LTR|ERVK	37849.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	114.41	140.08	89.72	139.67	150.22	135.04	155.26	133.98	75.57
Merged-chr2-35256347-3	chr2	35255857	35256857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206367)	promoter-TSS (NM_001206367)	-2.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	15.45	11.98	17.57	26.31	17.73	21.7	15.84	12.38	6.25
Merged-chr6-127351865-3	chr6	127351377	127352377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-43910.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	14.3	9.68	2.77	15.52	5.13	8.84	7.39	10.61	3.75
Merged-chr4-6191056-3	chr4	6190565	6191565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026534)	promoter-TSS (NM_026534)	-40.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	8.58	13.36	9.25	15.52	7.93	6.43	28.52	13.27	10.62
Merged-chr14-54577557-3	chr14	54577058	54578058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010590, exon 1 of 8)	5' UTR (NM_010590, exon 1 of 8)	103.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	13.73	11.06	7.4	12.14	13.06	32.15	36.97	37.58	16.24
Merged-chr16-45376013-1	chr16	45375513	45376513	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33040.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.58	9.68	1.85	10.12	10.26	19.29	5.28	3.54	5.0
Merged-chr4-86690403-3	chr4	86689895	86690895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20336.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	149.88	118.88	68.45	188.25	174.01	118.96	71.82	70.75	70.57
Merged-chr1-71974915-3	chr1	71974425	71975425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	30270.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	9.15	5.07	1.85	2.7	4.2	4.82	3.17	6.19	6.87
Merged-chr4-11076191-3	chr4	11075674	11076674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	31.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	24.6	9.22	18.5	19.57	12.13	6.43	19.01	16.8	6.25
Merged-chr14-31608942-3	chr14	31608434	31609434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019975, intron 16 of 16)	intron (NM_019975, intron 16 of 16)	-31551.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	38.33	28.57	45.32	50.6	43.39	44.21	76.05	77.38	51.21
Merged-chr1-23843954-2	chr1	23843469	23844469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110972)	TTS (NR_110972)	65767.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	25.74	25.8	17.57	1.35	2.33	0.0	17.96	15.92	16.24
Merged-chr1-132139715-3	chr1	132139170	132140170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008795)	promoter-TSS (NM_008795)	15.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	16.02	11.52	18.5	18.22	14.46	23.31	25.35	10.61	13.12
Merged-chr15-100085088-3	chr15	100084571	100085571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	46407.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	319.21	265.87	198.87	276.63	236.99	125.39	246.09	312.61	116.16
Merged-chr2-75659804-3	chr2	75659271	75660271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146130, intron 1 of 10)	CpG	481.0	NR_033513	627828.0	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	516.56	346.97	221.99	416.98	276.64	256.41	380.23	302.44	155.51
Merged-chr5-3543831-3	chr5	3543344	3544344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	11.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	118.42	92.62	57.35	95.14	84.9	72.34	94.0	53.94	50.59
Merged-chr2-34373213-3	chr2	34372672	34373672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1127.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	19.45	12.44	14.8	27.66	13.06	16.08	19.01	11.05	17.49
Merged-chr10-40349272-3	chr10	40348781	40349781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-27.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	161.32	149.29	126.72	124.15	118.49	144.68	156.32	184.83	88.06
Merged-chr6-113038119-3	chr6	113037624	113038624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8178.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	56.06	49.3	37.0	77.59	71.84	53.85	48.58	65.0	26.85
Merged-chr2-122147605-3	chr2	122147109	122148109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-78.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	389.0	408.72	251.59	362.32	329.35	222.65	367.55	500.09	190.48
Merged-chr3-95016248-3	chr3	95015735	95016735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-778.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	409.02	354.8	223.84	288.1	290.63	272.48	318.97	357.71	141.77
Merged-chr4-130801429-3	chr4	130800945	130801945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8908.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	476.52	351.12	253.44	480.4	285.04	286.15	423.53	439.07	191.73
Merged-chr2-167260598-3	chr2	167260107	167261107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20070.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	56.06	37.78	36.07	64.1	33.59	59.48	80.27	54.39	40.59
Merged-chr14-32165809-4	chr14	32165344	32166344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019744)	promoter-TSS (NM_019744)	55.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	139.01	145.61	85.1	150.46	125.49	126.19	166.88	191.46	121.78
Merged-chr2-128445604-3	chr2	128445130	128446130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16279.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	34.32	27.65	24.05	12.82	7.93	4.82	31.69	26.53	26.23
Merged-chr9-21924205-3	chr9	21923708	21924708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045606, intron 3 of 4)	intron (NR_045606, intron 3 of 4)	3080.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	56.63	57.6	45.32	56.68	51.32	45.82	45.42	54.39	43.09
Merged-chr15-97373996-3	chr15	97373502	97374502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172293, exon 5 of 6)	5' UTR (NM_172293, exon 5 of 6)	-126715.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	161.32	170.49	81.4	189.6	155.81	119.76	240.81	295.37	126.78
Merged-chr14-26638026-3	chr14	26637516	26638516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007479)	promoter-TSS (NM_007479)	-118.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	370.12	361.72	192.39	372.44	371.34	270.07	315.8	408.56	169.25
Merged-chr1-165604388-3	chr1	165603895	165604895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 4 of 5)	intron (NM_001083897, intron 4 of 5)	30146.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	25.74	13.36	16.65	25.64	16.33	16.08	9.51	12.38	5.0
Merged-chr19-32211050-3	chr19	32210549	32211549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	-36.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	37.76	31.79	11.1	78.27	73.24	73.95	26.4	23.43	25.61
Merged-chr18-36679396-3	chr18	36678876	36679876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357512)	promoter-TSS (NM_001357512)	-10.0	NM_146085	225372.0	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	345.52	316.56	262.69	356.93	309.3	245.96	234.47	343.12	145.51
Merged-chr11-98729433-3	chr11	98728925	98729925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011869)	promoter-TSS (NM_011869)	10.0	NM_001361995	23989.0	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	44.05	41.47	35.15	25.64	28.46	36.97	29.57	39.35	21.23
Merged-chr10-13184276-3	chr10	13183740	13184740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 4 of 10)	intron (NM_181470, intron 4 of 10)	-6217.0	NM_029172	75122.0	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	50.91	47.0	46.25	40.48	34.99	60.28	39.08	34.93	44.97
Merged-chr8-46595797-3	chr8	46595297	46596297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001184, intron 6 of 14)	intron (NM_001001184, intron 6 of 14)	21430.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	44.05	64.97	48.1	56.0	44.32	62.7	48.58	49.52	51.21
Merged-chr14-72933828-3	chr14	72933327	72934327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91776.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	11.44	14.75	14.8	13.49	9.33	12.86	6.34	6.63	5.62
Merged-chr12-73611002-3	chr12	73610493	73611493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	26197.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	38.33	30.41	27.75	53.3	28.92	38.58	20.07	15.92	11.24
Merged-chr8-122430083-1	chr8	122429583	122430583	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2857.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	374.12	298.59	194.24	367.05	225.79	208.18	331.64	333.84	157.38
Merged-chr11-34031538-3	chr11	34031036	34032036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15392.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	247.13	226.71	182.22	218.61	196.4	133.43	211.24	219.76	136.15
Merged-chr11-108222831-3	chr11	108222347	108223347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	121041.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	232.25	247.44	150.77	248.97	193.13	204.16	230.25	271.93	132.4
Merged-chr5-103758697-3	chr5	103758215	103759215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	4142.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	25.17	16.13	12.95	16.87	9.8	14.47	12.67	4.42	12.49
Merged-chr10-117860545-3	chr10	117860058	117861058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14584.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	618.96	547.87	312.63	614.67	516.42	340.0	486.9	683.59	267.3
Merged-chr10-66864589-3	chr10	66864144	66865144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55740.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	192.78	135.01	90.65	158.56	125.49	98.06	139.42	118.5	88.68
Merged-chr7-141562149-3	chr7	141561618	141562618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007459)	promoter-TSS (NM_007459)	-62.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	99.54	107.82	141.52	138.99	116.16	147.9	128.85	141.94	73.69
Merged-chrX-57305161-3	chrX	57304648	57305648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	21453.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	25.17	35.94	14.8	30.36	24.26	25.72	20.07	20.34	13.74
Merged-chr13-33931813-3	chr13	33931328	33932328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-4204.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	39.47	65.43	44.4	42.51	62.51	55.46	67.6	91.97	47.46
Merged-chr10-44691794-3	chr10	44691315	44692315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-233067.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	163.61	202.28	147.99	198.37	243.05	197.73	146.81	207.38	97.43
Merged-chr3-53460273-3	chr3	53459771	53460771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	2987.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	258.57	220.25	136.89	198.37	144.62	169.6	242.92	191.46	143.02
Merged-chr10-99427284-3	chr10	99426778	99427778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164047.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	10.87	9.22	7.4	11.47	4.2	9.65	10.56	7.96	9.99
Merged-chr1-155505186-1	chr1	155504686	155505686	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21925.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	1.72	5.53	1.85	4.05	6.06	5.63	5.28	7.96	5.0
Merged-chr17-10383624-3	chr17	10383125	10384125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59023.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	197.36	144.69	106.37	155.19	114.76	144.68	121.46	145.47	103.05
Merged-chr5-100585229-3	chr5	100584745	100585745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-13040.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	24.6	21.66	12.02	17.54	20.99	2.41	39.08	19.46	14.99
Merged-chr13-37845797-3	chr13	37845302	37846302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	18409.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	42.9	39.63	29.6	43.86	41.99	63.5	47.53	36.26	31.85
Merged-chr5-135778523-3	chr5	135778003	135779003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008617)	promoter-TSS (NM_008617)	-118.0	NM_001289557	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	134.43	134.09	166.49	140.34	109.63	132.63	135.19	120.27	75.57
Merged-chr15-88862009-3	chr15	88861515	88862515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145478)	promoter-TSS (NM_145478)	-179.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	326.07	282.0	184.99	341.41	309.3	241.94	302.07	270.16	159.88
Merged-chr1-131103933-3	chr1	131103442	131104442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6099.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	93.82	90.31	96.2	88.39	52.72	72.34	101.39	91.53	96.18
Merged-chr9-21962572-3	chr9	21961990	21962990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010149, intron 1 of 7)	intron (NM_010149, intron 1 of 7)	1086.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	16.59	13.36	14.8	24.29	23.33	20.09	10.56	17.24	11.24
Merged-chr7-16294985-3	chr7	16294485	16295485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8190.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	176.19	136.39	128.57	174.75	147.88	99.67	171.1	178.19	90.56
Merged-chr9-25510768-3	chr9	25510229	25511229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	29132.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	89.81	81.56	63.82	160.58	98.9	102.08	83.44	92.86	43.09
Merged-chr17-43557317-3	chr17	43556814	43557814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11137.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	266.0	261.26	165.57	258.42	224.86	255.6	223.91	244.96	123.03
Merged-chr1-184478190-3	chr1	184477697	184478697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79494.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	60.64	37.78	16.65	68.15	25.66	35.37	36.97	34.05	21.86
Merged-chr1-44147871-3	chr1	44147369	44148369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011729, exon 1 of 15)	5' UTR (NM_011729, exon 1 of 15)	125.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	93.82	91.7	85.1	104.58	128.29	151.92	94.0	95.51	70.57
Merged-chr3-144202359-4	chr3	144201807	144202807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161770)	promoter-TSS (NM_001161770)	25.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	47.48	45.16	72.15	52.63	48.98	65.91	62.31	53.06	55.58
Merged-chr11-62076911-3	chr11	62076379	62077379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029936)	promoter-TSS (NM_001029936)	-145.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	57.21	21.2	18.5	53.98	31.26	28.13	33.8	21.67	12.49
Merged-chr5-21030393-3	chr5	21029887	21030887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	4860.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	89.24	85.71	40.7	72.19	62.51	62.7	88.72	93.3	55.58
Merged-chr14-75017510-3	chr14	75016985	75017985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	1458.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	42.33	56.68	43.47	37.78	20.99	38.58	80.27	72.52	26.23
Merged-chr12-59061390-3	chr12	59060868	59061868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030057, exon 1 of 6)	5' UTR (NM_030057, exon 1 of 6)	104.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	203.65	231.31	180.37	182.85	254.71	151.92	226.02	205.17	126.78
Merged-chr18-36783175-3	chr18	36782688	36783688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305627)	promoter-TSS (NM_001305627)	17.0	NM_008214	15115.0	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	65.21	61.28	79.55	51.95	92.84	63.5	83.44	58.37	34.35
Merged-chr3-9833652-3	chr3	9833161	9834161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195031)	promoter-TSS (NM_001195031)	18.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	75.51	76.03	77.7	71.52	64.84	60.28	88.72	81.36	52.46
Merged-chr12-3799749-3	chr12	3799241	3800241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7239.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	48.62	28.11	33.3	37.11	27.52	32.15	62.31	34.49	29.98
Merged-chr12-12295100-4	chr12	12294644	12295644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	33005.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	161.32	190.76	86.95	172.73	153.01	107.71	167.93	168.91	93.68
Merged-chr7-45182370-3	chr7	45181870	45182870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053256)	TTS (NM_053256)	1375.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	7.44	6.45	1.85	8.1	6.06	5.63	4.22	6.19	2.5
Merged-chr1-82793304-3	chr1	82792788	82793788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24832.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	18.31	25.8	34.22	24.96	20.99	36.97	11.62	28.3	24.36
Merged-chr6-48554758-3	chr6	48554206	48555206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177736)	promoter-TSS (NM_177736)	-93.0	NM_001110160	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	158.46	200.44	98.97	148.44	138.09	144.68	141.53	194.55	103.05
Merged-chr2-5713424-3	chr2	5712877	5713877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	1385.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	159.6	158.51	101.74	178.13	132.95	147.09	140.47	186.59	96.8
Merged-chr3-84814451-3	chr3	84813959	84814959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1118.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	356.96	342.36	265.46	336.68	296.23	223.45	241.87	301.56	160.5
Merged-chr14-72603083-3	chr14	72602584	72603584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	106919.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	329.5	420.7	186.84	352.2	327.49	249.17	408.74	589.85	216.71
Merged-chr14-104937542-3	chr14	104936939	104937939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 4 of 5)	intron (NR_015593, intron 4 of 5)	177237.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	54.92	47.0	38.85	37.11	31.72	22.51	64.43	56.16	23.73
Merged-chr4-150078814-3	chr4	150078331	150079331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8672.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	32.04	17.51	11.1	21.59	17.73	18.49	44.36	29.18	19.36
Merged-chr5-137858149-3	chr5	137857639	137858639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-90.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	36.04	31.79	36.07	41.16	28.46	38.58	49.64	32.28	36.22
Merged-chr5-124440223-1	chr5	124439723	124440723	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	CpG	293.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	90.96	97.69	57.35	77.59	53.18	76.36	103.51	113.19	66.2
Merged-chr14-75164555-3	chr14	75164081	75165081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	28156.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	236.83	310.57	184.99	288.1	297.17	248.37	240.81	332.07	173.62
Merged-chr6-122935054-3	chr6	122934556	122935556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199311)	TTS (NM_199311)	13208.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	68.65	99.07	53.65	78.27	64.38	81.99	128.85	121.15	58.08
Merged-chr11-83675913-3	chr11	83675413	83676413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13329.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	16.02	14.75	20.35	12.14	9.33	12.86	16.9	15.03	13.74
Merged-chr18-38372179-3	chr18	38371661	38372661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33168.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	93.82	99.99	63.82	124.15	65.31	98.06	70.76	98.6	74.32
Merged-chr18-63708646-3	chr18	63708164	63709164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360837)	promoter-TSS (NM_001360837)	-31.0	NM_001360837	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	98.97	92.62	69.37	141.69	114.29	96.45	144.7	129.55	58.71
Merged-chr11-89100643-3	chr11	89100161	89101161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26820.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	30.89	29.95	11.1	12.14	4.67	4.82	12.67	15.92	8.74
Merged-chr6-128362791-3	chr6	128362304	128363304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326586)	promoter-TSS (NM_001326586)	18.0	NM_001326586	72440.0	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	155.03	158.05	136.89	177.45	142.29	143.07	167.93	68.54	48.09
Merged-chr10-67633302-3	chr10	67632806	67633806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61347.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	94.39	80.64	67.52	103.91	48.52	65.91	130.97	118.94	58.71
Merged-chr7-64360253-3	chr7	64359745	64360745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	13850.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	86.38	120.26	61.97	157.88	101.7	125.39	125.69	157.41	108.67
Merged-chr16-22010398-3	chr16	22009893	22010893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357424, intron 1 of 15)	intron (NM_001357424, intron 1 of 15)	909.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	245.98	214.26	91.57	208.49	204.8	126.19	149.98	225.06	89.93
Merged-chr7-47068031-3	chr7	47067537	47068537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15187.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	117.27	106.44	67.52	116.73	76.51	87.61	127.8	132.21	59.33
Merged-chr19-26845475-3	chr19	26844958	26845958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21551.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	8.01	5.07	1.85	12.82	9.33	5.63	6.34	3.54	5.0
Merged-chr17-12171239-3	chr17	12170716	12171716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51932.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	6.86	5.53	1.85	14.84	8.4	12.86	15.84	20.78	13.12
Merged-chr3-139075460-3	chr3	139074943	139075943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040690)	promoter-TSS (NM_001040690)	-242.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	110.41	112.43	121.17	114.03	79.31	94.85	57.03	57.04	76.82
Merged-chr10-96690498-3	chr10	96689969	96690969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73468.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	283.17	249.28	165.57	275.28	231.39	171.21	264.05	309.96	117.41
Merged-chr7-141022307-3	chr7	141021806	141022806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5414.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	74.37	76.49	85.1	93.79	54.11	109.32	76.05	91.97	99.92
Merged-chr19-4037955-3	chr19	4037466	4038466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	-54.0	NM_013541	14870.0	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	41.76	37.32	43.47	36.43	28.92	68.32	48.58	38.03	38.1
Merged-chr1-45868893-3	chr1	45868388	45869388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56706.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	152.74	178.32	91.57	180.82	116.16	122.18	164.76	168.02	88.68
Merged-chr9-90251244-3	chr9	90250756	90251756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	19513.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	90.96	80.18	58.27	125.5	80.71	86.01	101.39	89.32	75.57
Merged-chr4-154927136-1	chr4	154926636	154927636	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 2 of 7)	intron (NM_178931, intron 2 of 7)	941.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	53.2	76.03	69.37	45.88	47.12	50.64	101.39	111.87	71.2
Merged-chr12-69159224-3	chr12	69158730	69159730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-44.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	236.26	251.13	163.72	186.9	208.06	177.64	166.88	203.84	141.77
Merged-chr11-44523957-3	chr11	44523466	44524466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	4589.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	47.48	75.11	40.7	60.05	31.72	32.96	84.49	91.97	60.58
Merged-chr9-106447624-3	chr9	106447143	106448143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	35.0	NM_001359225	68644.0	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	21.17	21.66	7.4	30.36	10.26	8.84	29.57	8.4	24.36
Merged-chr16-32402982-3	chr16	32402511	32403511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	2505.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	54.35	55.75	42.55	33.74	15.86	17.68	26.4	29.63	27.48
Merged-chr7-45136426-3	chr7	45135892	45136892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013520)	promoter-TSS (NM_013520)	40.0	NM_013520	14256.0	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	22.88	19.35	14.8	28.34	18.66	23.31	12.67	26.97	17.49
Merged-chr12-86241804-3	chr12	86241307	86242307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324488)	promoter-TSS (NM_001324488)	-51.0	NM_027405	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	241.98	352.5	278.41	236.83	291.57	250.78	249.26	332.51	169.87
Merged-chr7-83809860-3	chr7	83809338	83810338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14999.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	18.88	14.28	12.95	21.59	12.6	21.7	20.07	8.84	14.99
Merged-chr15-39737659-3	chr15	39737153	39738153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8277.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	2.29	4.15	0.0	4.05	7.46	4.82	7.39	3.98	5.0
Merged-chr17-43093839-1	chr17	43093339	43094339	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	64452.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	12.01	9.22	12.95	14.17	7.46	8.84	7.39	0.44	3.75
Merged-chr6-99522775-3	chr6	99522275	99523275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-12329	-1782.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	181.34	155.28	160.94	177.45	141.35	146.29	232.36	191.02	113.04
Merged-chr5-23894420-3	chr5	23893933	23894933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	61.78	53.91	49.95	97.16	86.77	45.82	72.88	64.11	24.98
Merged-chr17-35424798-3	chr17	35424327	35425327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023124)	promoter-TSS (NM_023124)	-20.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	115.55	75.11	28.67	70.17	34.52	14.47	84.49	67.65	14.36
Merged-chr6-134035261-3	chr6	134034762	134035762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007961)	promoter-TSS (NM_007961)	-438.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	560.61	514.7	353.33	453.41	430.12	358.49	382.34	421.83	217.34
Merged-chr10-119055420-3	chr10	119054896	119055896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4897.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	288.32	237.3	143.37	298.23	220.19	143.07	242.92	308.19	109.29
Merged-chr16-30601612-3	chr16	30601088	30602088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	1865.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	112.69	86.63	43.47	94.46	70.91	80.38	85.55	93.74	45.59
Merged-chr13-111933726-3	chr13	111933225	111934225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65789.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	87.52	98.15	66.6	129.55	83.97	102.08	88.72	83.57	54.96
Merged-chr6-97178799-1	chr6	97178299	97179299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081111, intron 1 of 16)	intron (NM_001081111, intron 1 of 16)	325.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	208.8	184.77	147.07	217.93	214.13	212.2	181.66	178.64	93.05
Merged-chr5-146829721-1	chr5	146829221	146830221	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3169.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	10.87	12.9	19.42	11.47	11.2	14.47	89.78	104.35	58.08
Merged-chr17-65886398-3	chr17	65885891	65886891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-636.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	73.79	109.21	86.95	85.69	112.43	91.63	89.78	131.77	63.08
Merged-chr8-107425098-3	chr8	107424620	107425620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026277)	promoter-TSS (NM_026277)	-82.0	NM_026277	67619.0	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	13.73	9.22	18.5	16.19	14.0	14.47	16.9	19.9	9.99
Merged-chr9-119075531-3	chr9	119075058	119076058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 5 of 14)	intron (NM_019676, intron 5 of 14)	12703.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	77.23	51.61	61.05	128.87	132.49	127.0	163.71	181.29	84.31
Merged-chr7-115019564-3	chr7	115019026	115020026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	68252.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	41.76	56.22	37.92	35.09	33.12	47.42	55.98	62.35	73.69
Merged-chr10-42276136-1	chr10	42275636	42276636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019740, intron 1 of 3)	CpG-1005	606.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	302.04	195.83	240.49	300.92	209.0	196.93	272.5	237.89	129.9
Merged-chr13-86046754-3	chr13	86046210	86047210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007749)	promoter-TSS (NM_007749)	85.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	108.69	123.03	140.59	101.88	99.37	148.7	110.9	120.71	89.93
Merged-chr8-84200399-3	chr8	84199898	84200898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8120.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	108.12	51.61	51.8	104.58	47.58	60.28	78.16	44.66	38.1
Merged-chr1-180849068-3	chr1	180848570	180849570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2081.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	574.91	525.75	277.49	649.08	491.7	270.88	455.22	607.54	258.55
Merged-chr15-62003044-3	chr15	62002522	62003522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17681.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	45.19	32.72	50.87	35.76	25.66	36.17	41.19	25.2	44.34
Merged-chr18-36559826-4	chr18	36559281	36560281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-822.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	443.91	381.07	334.83	411.58	306.03	229.88	384.45	418.29	219.21
Merged-chr16-55754592-3	chr16	55754091	55755091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67547.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	219.1	202.75	137.82	186.22	171.21	105.3	167.93	242.75	136.77
Merged-chr19-34524744-3	chr19	34524316	34525316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021460, exon 2 of 10)	exon (NM_021460, exon 2 of 10)	2658.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	270.58	213.8	106.37	294.85	188.0	147.09	312.63	283.87	113.66
Merged-chr14-30635406-3	chr14	30634907	30635907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9199.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	10.87	3.69	8.32	11.47	6.06	4.02	17.96	10.17	5.0
Merged-chr10-59292735-3	chr10	59292235	59293235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30561.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	3.43	4.61	3.7	14.17	2.8	4.82	5.28	1.77	3.75
Merged-chr12-111758881-3	chr12	111758376	111759376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025358)	promoter-TSS (NM_001025358)	8.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	201.93	229.93	172.04	192.29	243.52	173.62	237.64	217.1	118.04
Merged-chr6-129434396-3	chr6	129433882	129434882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175526, intron 3 of 5)	intron (NM_175526, intron 3 of 5)	17618.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	94.96	101.83	46.25	94.46	69.04	68.32	85.55	78.71	41.84
Merged-chr11-3155458-2	chr11	3154947	3155947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 13 of 33)	exon (NM_030207, exon 13 of 33)	31426.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	40.62	68.2	98.97	72.19	76.04	133.43	3.17	1.33	149.26
Merged-chr17-34555692-3	chr17	34555191	34556191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8604.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	16.02	17.97	8.32	44.53	28.92	18.49	28.52	22.55	5.62
Merged-chr4-8842969-3	chr4	8842474	8843474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 18 of 36)	L1MA5A|LINE|L1	91650.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	161.89	197.22	113.77	190.95	161.88	120.57	201.73	243.19	121.16
Merged-chr16-89848764-3	chr16	89848278	89849278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-30426.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	28.03	38.25	52.72	37.11	25.66	45.82	33.8	34.05	43.72
Merged-chr4-59581588-3	chr4	59581079	59582079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024255)	promoter-TSS (NM_024255)	16.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	169.33	178.78	122.09	130.22	158.61	128.61	166.88	213.12	96.18
Merged-chr4-142091269-3	chr4	142090764	142091764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6960.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	121.85	103.22	90.65	132.24	72.31	111.73	103.51	152.55	49.34
Merged-chr2-174438950-3	chr2	174438449	174439449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	90.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	622.39	595.79	514.27	522.23	599.46	390.64	523.87	762.3	306.02
Merged-chr5-38493989-1	chr5	38493489	38494489	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 1 of 10)	ORR1C1|LTR|ERVL-MaLR	8163.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.15	4.15	7.4	1.35	1.87	6.43	20.07	15.03	9.37
Merged-chr9-107296645-3	chr9	107296155	107297155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-4.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	37.18	30.41	20.35	25.64	20.06	16.08	61.26	33.6	20.61
Merged-chr5-9087426-1	chr5	9086926	9087926	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13311.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	58.35	47.92	69.37	43.18	30.32	59.48	66.54	57.04	46.84
Merged-chr4-101182808-3	chr4	101182285	101183285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 5 of 24)	(A)n|Simple_repeat|Simple_repeat	82497.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	61.78	58.98	34.22	68.15	48.05	36.17	49.64	85.34	42.47
Merged-chr14-66868746-3	chr14	66868253	66869253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-97.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	38.33	45.16	42.55	31.04	31.26	53.85	47.53	38.03	59.33
Merged-chr11-117194645-3	chr11	117194191	117195191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4970.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	163.04	129.02	82.32	186.22	134.82	95.65	147.87	177.75	75.57
Merged-chr4-86668785-3	chr4	86668273	86669273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 1 of 7)	intron (NM_007408, intron 1 of 7)	1286.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	166.47	155.75	128.57	156.53	172.61	142.27	163.71	212.24	90.56
Merged-chr12-91764502-3	chr12	91763996	91764996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21940.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	251.13	191.23	149.84	243.57	185.2	232.29	322.14	293.6	176.12
Merged-chr4-133277738-3	chr4	133277248	133278248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110978)	promoter-TSS (NR_110978)	42.0	NM_025667	52174.0	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	203.08	219.79	207.19	205.79	235.59	213.81	171.1	173.33	110.54
Merged-chr15-58262270-3	chr15	58261768	58262768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47376.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	175.05	132.25	106.37	292.15	217.39	148.7	146.81	159.18	78.07
Merged-chr15-75616572-3	chr15	75616068	75617068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011759)	promoter-TSS (NM_011759)	-116.0	NM_001044718	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	15.45	13.36	20.35	26.31	21.93	25.72	21.12	20.78	10.62
Merged-chr1-189007818-3	chr1	189007326	189008326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172650)	promoter-TSS (NM_172650)	14.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	54.35	40.09	26.82	63.42	44.78	33.76	71.82	45.1	39.97
Merged-chr2-36234651-3	chr2	36234149	36235149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	MIRb|SINE|MIR	4223.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	60.07	69.12	62.9	93.11	57.38	53.85	106.67	83.57	57.46
Merged-chr4-135945916-3	chr4	135945408	135946408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-540.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	204.22	138.7	114.69	244.92	156.75	154.33	242.92	195.88	124.28
Merged-chr13-20562442-3	chr13	20561952	20562952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	MIR3|SINE|MIR	89462.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.29	11.98	9.25	19.57	7.93	12.06	10.56	5.75	6.25
Merged-chr15-76671574-3	chr15	76671067	76672067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358933)	promoter-TSS (NM_001358933)	-76.0	NM_001358933	73062.0	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	25.74	29.49	19.42	33.74	17.73	38.58	32.74	25.65	19.98
Merged-chr11-83640361-3	chr11	83639849	83640849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9029.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	118.42	67.27	37.92	201.07	116.16	79.58	97.17	72.52	42.47
Merged-chr5-110107739-3	chr5	110107234	110108234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145147, intron 1 of 9)	CpG-11316	463.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	180.2	168.19	211.81	179.47	153.95	176.03	218.63	206.49	113.66
Merged-chr1-34839428-3	chr1	34838915	34839915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3635.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	129.28	129.48	70.3	171.38	127.36	106.1	138.36	162.28	76.82
Merged-chr10-43996385-3	chr10	43995872	43996872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	8474.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	192.21	205.05	134.12	178.8	135.29	91.63	154.2	176.87	88.68
Merged-chr18-5123441-3	chr18	5122946	5123946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42285.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	31.46	46.54	44.4	57.35	52.72	59.48	50.7	30.51	29.98
Merged-chr19-37482867-3	chr19	37482331	37483331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	17577.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	62.93	42.39	25.9	51.95	27.06	20.09	65.48	43.33	34.35
Merged-chr17-65635946-3	chr17	65635452	65636452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3804.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	74.37	72.34	60.12	66.12	54.58	51.44	54.92	71.63	53.71
Merged-chr10-78087302-3	chr10	78086779	78087779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17911.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	36.04	25.34	18.5	37.11	28.92	49.03	41.19	34.05	21.23
Merged-chr2-83724417-3	chr2	83723918	83724918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008402)	promoter-TSS (NM_008402)	21.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	118.42	106.9	149.84	138.32	111.5	134.23	136.25	112.75	100.55
Merged-chr13-49682054-3	chr13	49681526	49682526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172015)	promoter-TSS (NM_172015)	-104.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	40.04	51.15	32.37	29.69	41.05	36.17	40.14	45.54	31.85
Merged-chr2-3284748-1	chr2	3284248	3285248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008708, intron 1 of 13)	CpG	536.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	71.51	62.21	59.2	89.06	93.3	72.34	85.55	69.42	48.71
Merged-chr18-20736024-3	chr18	20735548	20736548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10356.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	103.54	126.72	107.29	113.35	90.97	102.88	98.23	140.17	78.07
Merged-chr5-74944250-3	chr5	74943751	74944751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	9.15	4.61	1.85	14.84	11.66	26.53	5.28	3.98	9.99
Merged-chr12-76540369-3	chr12	76539837	76540837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	6777.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	62.35	44.24	26.82	22.27	14.46	16.08	15.84	11.94	12.49
Merged-chr14-50807800-3	chr14	50807327	50808327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002142)	promoter-TSS (NR_002142)	-56.0	NR_002142	85029.0		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	229.97	254.81	118.39	181.5	216.93	132.63	235.53	278.57	115.54
Merged-chr18-80690119-3	chr18	80689636	80690636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	18037.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	103.54	80.18	28.67	139.67	81.17	41.8	71.82	68.09	24.98
Merged-chr17-56507818-3	chr17	56507321	56508321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4662.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	70.93	61.28	39.77	90.41	81.64	65.11	65.48	41.12	24.98
Merged-chr9-13298991-3	chr9	13298506	13299506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52050.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	131.57	136.85	116.54	116.05	102.63	143.07	115.12	107.0	64.95
Merged-chr15-34443352-3	chr15	34442869	34443869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028101)	promoter-TSS (NR_028101)	-93.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	223.1	270.94	160.02	255.72	236.05	186.48	216.52	240.1	134.9
Merged-chr8-84665095-3	chr8	84664610	84665610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2258.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	128.14	126.25	83.25	105.26	70.44	87.61	86.61	122.04	74.32
Merged-chr13-37772893-3	chr13	37772415	37773415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53123.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	60.07	45.16	28.67	64.1	41.05	37.78	27.46	34.05	21.23
Merged-chr7-88251680-3	chr7	88251175	88252175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26410.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	139.58	126.25	79.55	93.79	59.71	75.56	113.01	130.44	84.94
Merged-chr18-20896193-6	chr18	20895676	20896676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-98.0	NM_177038	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	206.51	196.29	172.04	197.02	205.73	178.44	216.52	182.62	105.55
Merged-chr4-132605975-3	chr4	132605495	132606495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33051.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	112.12	68.2	54.57	103.91	74.17	108.51	123.57	98.16	51.21
Merged-chr9-86571874-3	chr9	86571353	86572353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145969)	promoter-TSS (NM_001145969)	-11.0	NM_028352	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	49.2	47.92	49.02	68.15	54.11	62.7	50.7	37.58	44.97
Merged-chr1-60913524-2	chr1	60913020	60914020	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009843, intron 3 of 3)	intron (NM_009843, intron 3 of 3)	4495.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	46.91	48.38	38.85	28.34	10.26	20.9	39.08	24.76	27.48
Merged-chr6-13838709-3	chr6	13838248	13839248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 2 of 4)	5' UTR (NM_001330666, exon 2 of 4)	1194.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	37.18	26.26	12.95	31.04	30.79	28.94	34.85	18.13	24.36
Merged-chr8-120436904-3	chr8	120436426	120437426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51940.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	132.14	122.57	61.05	124.15	103.56	82.79	159.48	156.09	63.08
Merged-chr7-127026868-1	chr7	127026368	127027368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010772)	promoter-TSS (NM_010772)	-389.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	122.99	67.74	98.05	105.93	50.38	102.08	126.74	87.11	48.71
Merged-chr19-45363639-3	chr19	45363135	45364135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009771)	promoter-TSS (NM_009771)	-99.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	20.59	20.27	16.65	31.04	14.93	13.66	26.4	19.9	11.24
Merged-chr18-50033034-3	chr18	50032535	50033535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	2051.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	78.37	102.75	81.4	97.83	60.18	102.88	64.43	57.04	48.09
Merged-chr14-20765910-4	chr14	20765401	20766401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039139, intron 7 of 18)	intron (NM_001039139, intron 7 of 18)	28187.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	16.02	21.2	23.12	21.59	20.99	29.74	28.52	10.61	9.99
Merged-chr4-19575081-3	chr4	19574579	19575579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025476)	promoter-TSS (NM_025476)	13.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	249.42	229.93	154.47	263.81	253.78	211.4	211.24	196.32	115.54
Merged-chr2-131262450-3	chr2	131261956	131262956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355683)	promoter-TSS (NM_001355683)	-44.0	NM_001355683	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	165.32	118.42	151.69	116.05	89.1	127.8	151.03	117.17	118.04
Merged-chr8-84222696-3	chr8	84222213	84223213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 10 of 13)	intron (NM_172503, intron 10 of 13)	-13806.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	140.15	128.1	83.25	123.47	80.71	69.13	82.38	114.08	64.95
Merged-chr7-31008337-3	chr7	31007814	31008814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26393.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	18.88	14.75	10.17	19.57	14.46	27.33	14.79	14.59	13.74
Merged-chr6-134830103-3	chr6	134829613	134830613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-86.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	200.79	160.35	98.05	144.39	139.95	131.82	201.73	174.21	101.17
Merged-chr12-5119900-3	chr12	5119407	5120407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 5 of 13)	intron (NM_001164493, intron 5 of 13)	202554.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	13.16	29.49	24.05	39.13	52.25	40.19	24.29	30.07	11.87
Merged-chr11-120633992-1	chr11	120633492	120634492	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-445.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	133.29	71.88	97.12	143.71	78.84	62.7	121.46	90.2	44.34
Merged-chr2-75683091-3	chr2	75682580	75683580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	21583.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	191.07	197.22	92.5	210.51	184.74	139.06	152.09	130.0	71.82
Merged-chr13-60895515-3	chr13	60895013	60896013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001145801, exon 4 of 4)	3' UTR (NM_001145801, exon 4 of 4)	1934.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	78.37	96.76	61.05	79.62	76.51	65.91	132.02	141.94	36.22
Merged-chr8-60983318-3	chr8	60982806	60983806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	5.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	318.06	299.51	195.17	347.48	312.56	293.38	278.83	335.16	175.49
Merged-chr11-5741171-3	chr11	5740669	5741669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361590)	promoter-TSS (NM_001361590)	7.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	190.49	165.42	172.97	145.06	141.82	134.23	255.6	174.66	145.51
Merged-chr4-41756150-3	chr4	41755615	41756615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	-95.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	78.37	97.69	102.67	126.85	94.23	95.65	146.81	118.5	89.31
Merged-chr3-137947732-3	chr3	137947244	137948244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	29189.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	127.57	106.44	62.9	88.39	83.04	94.85	119.35	97.28	86.18
Merged-chr9-96718594-3	chr9	96718104	96719104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	MIRb|SINE|MIR	841.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	80.09	85.71	50.87	66.8	66.71	45.82	73.93	78.26	26.85
Merged-chr16-91382577-3	chr16	91382096	91383096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	MTEa-int|LTR|ERVL-MaLR	9813.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	199.65	169.57	98.05	228.05	150.68	159.15	223.91	206.05	91.18
Merged-chr5-63830897-2	chr5	63830404	63831404	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18409.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	81.23	117.96	78.62	93.79	102.63	106.1	108.79	143.26	89.93
Merged-chr10-118766217-3	chr10	118765718	118766718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102685.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	34.9	23.96	16.65	25.64	25.66	20.09	29.57	22.11	41.22
Merged-chr5-135713593-3	chr5	135713055	135714055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	22334.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	200.22	117.04	94.35	212.54	132.49	96.45	156.32	148.57	68.7
Merged-chr18-11839426-3	chr18	11838915	11839915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	-38.0	NR_045421	621998.0	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	54.35	35.48	55.5	83.66	58.78	74.75	54.92	39.8	23.73
Merged-chr12-86833914-3	chr12	86833428	86834428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50886.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	66.93	42.85	25.9	68.82	58.78	67.52	50.7	36.7	35.6
Merged-chr5-139149403-1	chr5	139148903	139149903	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	598.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	27.46	21.66	33.3	22.94	14.0	35.37	46.47	27.86	29.35
Merged-chr18-38601245-4	chr18	38600778	38601778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011898)	promoter-TSS (NM_011898)	-10.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	65.21	51.15	34.22	44.53	26.59	17.68	44.36	22.99	12.49
Merged-chr19-42753398-3	chr19	42752922	42753922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-647.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	172.76	191.23	116.54	156.53	155.35	168.8	170.05	206.93	120.53
Merged-chr6-131269755-3	chr6	131269250	131270250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22388.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	43.48	54.83	28.67	31.04	55.51	52.25	38.02	31.39	48.71
Merged-chr2-180702047-3	chr2	180701521	180702521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	81.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	330.07	469.54	269.16	340.73	455.31	258.82	309.46	312.61	216.71
Merged-chr11-3193187-3	chr11	3192800	3193800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	CpG	163.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	102.4	160.35	232.16	206.46	278.97	418.77	88.72	56.6	158.01
Merged-chr9-121301149-1	chr9	121300649	121301649	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3647.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.72	0.92	3.7	6.07	1.4	0.0	65.48	71.19	29.98
Merged-chr17-27820720-3	chr17	27820217	27821217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271511)	promoter-TSS (NM_001271511)	-175.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	268.87	172.79	169.27	250.99	176.81	143.07	239.75	270.61	126.15
Merged-chr11-120190074-3	chr11	120189569	120190569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030682)	promoter-TSS (NR_030682)	-213.0	NR_030682	100042332.0	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	8.01	3.23	5.55	8.1	0.93	1.61	5.28	0.88	1.25
Merged-chr17-34858835-3	chr17	34858338	34859338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008198, intron 10 of 17)	intron (NM_008198, intron 10 of 17)	-1206.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	22.88	19.81	49.95	14.84	11.2	24.11	26.4	20.34	25.61
Merged-chr14-10134058-3	chr14	10133534	10134534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	249939.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	11.44	10.14	6.47	18.89	12.6	17.68	11.62	7.07	11.87
Merged-chr19-40641052-3	chr19	40640567	40641567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-18703.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	51.48	59.44	42.55	113.35	82.57	86.81	68.65	58.37	58.08
Merged-chr16-17921969-3	chr16	17921433	17922433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6286.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	192.78	217.95	166.49	190.95	156.75	165.58	214.41	210.91	95.55
Merged-chr1-134302925-3	chr1	134302420	134303420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144855, intron 25 of 28)	intron (NM_001144855, intron 25 of 28)	12916.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	56.63	52.07	58.27	82.32	84.9	102.88	92.94	107.89	98.05
Merged-chr12-112860996-1	chr12	112860496	112861496	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019925)	promoter-TSS (NM_019925)	-80.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	5.15	2.76	1.85	6.07	7.0	3.22	11.62	5.31	6.25
Merged-chr9-44089051-3	chr9	44088577	44089577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	4157.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	159.6	138.7	90.65	181.5	164.21	128.61	124.63	113.19	64.33
Merged-chr7-80179495-1	chr7	80178995	80179995	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7346.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	14.87	12.9	6.47	12.14	1.87	8.04	109.84	135.3	53.71
Merged-chr7-89216851-3	chr7	89216348	89217348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	121939.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	85.24	98.15	68.45	113.35	99.83	104.49	102.45	96.39	68.07
Merged-chr15-101134535-3	chr15	101134033	101135033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 3 of 11)	intron (NM_001277255, intron 3 of 11)	6011.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	160.18	117.96	81.4	109.98	46.65	66.71	66.54	62.79	63.08
Merged-chr7-19461753-3	chr7	19461234	19462234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3240.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	33.75	52.99	56.42	39.81	39.19	55.46	60.2	72.07	41.84
Merged-chr19-42752688-3	chr19	42752231	42753231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	44.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	248.84	240.07	205.34	211.19	234.19	240.33	213.35	238.77	124.91
Merged-chr4-156210160-3	chr4	156209659	156210659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-5768.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	74.37	118.42	86.95	79.62	80.71	57.07	67.6	81.36	34.97
Merged-chr8-126494608-3	chr8	126494110	126495110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19545.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	49.2	19.81	12.95	49.25	32.19	31.35	31.69	10.17	7.49
Merged-chr14-76195503-3	chr14	76194980	76195980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55982.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	37.76	35.48	32.37	41.83	39.65	34.56	29.57	22.99	15.61
Merged-chr7-35234907-3	chr7	35234405	35235405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19560.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	78.94	81.56	49.02	64.77	42.92	40.19	89.78	59.25	67.45
Merged-chr17-87447030-5	chr17	87446539	87447539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007589)	promoter-TSS (NM_007589)	-104.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	306.05	184.31	134.12	227.38	166.54	121.37	246.09	183.5	103.67
Merged-chr10-34282697-1	chr10	34282197	34283197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009433, exon 1 of 1)	exon (NM_009433, exon 1 of 1)	507.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	364.4	386.6	219.21	344.11	381.6	221.04	261.93	312.17	154.26
Merged-chr9-70678876-3	chr9	70678373	70679373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007399)	promoter-TSS (NM_007399)	-109.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	73.22	52.07	65.67	72.19	67.18	62.7	82.38	71.19	59.33
Merged-chr10-8762929-3	chr10	8762428	8763428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123142.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	139.01	165.42	116.54	217.26	146.48	122.18	178.5	184.38	65.58
Merged-chr1-183388910-3	chr1	183388410	183389410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277959)	promoter-TSS (NM_001277959)	25.0	NM_001277957	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	17.73	23.04	20.35	29.69	25.66	25.72	16.9	8.4	18.11
Merged-chr13-109299046-3	chr13	109298529	109299529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-25715.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	36.61	34.56	12.95	31.71	19.59	46.62	43.3	38.91	26.85
Merged-chr9-57073615-3	chr9	57073103	57074103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110351, intron 1 of 21)	intron (NM_001110351, intron 1 of 21)	1563.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	128.71	142.84	147.99	129.55	111.5	155.93	133.08	143.7	91.18
Merged-chr15-76640008-3	chr15	76639504	76640504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183091)	promoter-TSS (NM_183091)	-75.0	NM_183091	72749.0	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	13.16	9.22	10.17	13.49	11.66	13.66	17.96	7.07	13.74
Merged-chr11-20113406-1	chr11	20112906	20113906	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-455.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	278.59	277.85	170.19	239.52	209.46	217.83	295.73	399.28	189.23
Merged-chr11-99448937-1	chr11	99448437	99449437	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10784.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	63.5	62.67	81.4	61.4	67.18	79.58	103.51	91.97	51.21
Merged-chr2-153108500-3	chr2	153107995	153108995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010407)	promoter-TSS (NM_010407)	27.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	117.84	110.13	127.64	97.16	92.84	147.9	106.67	98.16	89.93
Merged-chr11-98709283-3	chr11	98708779	98709779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 19 of 25)	intron (NM_001361995, intron 19 of 25)	7966.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	240.26	216.11	164.64	246.95	185.2	183.26	210.18	214.45	98.68
Merged-chr9-108306821-3	chr9	108306326	108307326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	29.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	361.54	308.73	336.68	344.11	243.52	261.23	312.63	276.35	181.11
Merged-chr8-94012729-3	chr8	94012229	94013229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011787)	promoter-TSS (NM_011787)	-89.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	173.9	142.38	143.37	128.2	108.23	135.84	121.46	84.01	88.68
Merged-chr7-116457179-3	chr7	116456687	116457687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-13729.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	94.96	69.12	53.65	132.24	111.96	103.69	65.48	74.28	39.97
Merged-chr1-144308484-3	chr1	144307993	144308993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59389.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	43.48	31.33	12.02	46.56	33.59	36.17	32.74	32.72	26.85
Merged-chr5-92374879-3	chr5	92374378	92375378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-11582.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	179.62	174.18	111.92	139.67	92.37	109.32	157.37	158.74	93.05
Merged-chr16-37654460-3	chr16	37653958	37654958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026610)	promoter-TSS (NM_026610)	-90.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	133.29	119.8	97.12	113.35	108.23	122.18	136.25	118.06	81.81
Merged-chr13-92637000-3	chr13	92636492	92637492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	25854.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	14.87	19.35	14.8	22.94	29.39	43.4	38.02	35.82	6.87
Merged-chr10-95548291-3	chr10	95547796	95548796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	11025.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	262.57	264.95	169.27	282.71	211.33	167.99	254.54	289.18	143.02
Merged-chr3-142273449-3	chr3	142272963	142273963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-104038.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	32.61	45.62	24.05	35.76	31.72	28.13	81.33	110.98	59.33
Merged-chr5-8675783-3	chr5	8675205	8676205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 6 of 29)	Tigger7|DNA|TcMar-Tigger	-52753.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	54.92	69.58	49.95	56.0	67.18	49.03	42.25	35.82	18.74
Merged-chr7-140882357-3	chr7	140881855	140882855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	-39.0	NM_011875	23997.0	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	66.93	84.78	60.12	72.87	58.31	87.61	86.61	62.35	49.34
Merged-chr5-121837748-3	chr5	121837274	121838274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-915.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	382.13	388.44	337.61	387.96	361.08	349.65	207.01	280.33	158.63
Merged-chr4-126609838-3	chr4	126609344	126610344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145950)	promoter-TSS (NM_001145950)	-10.0	NM_001013755	230757.0	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	36.04	30.41	32.37	56.68	46.65	61.09	58.09	32.72	36.22
Merged-chr1-84924290-3	chr1	84923795	84924795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027921, intron 2 of 4)	intron (NM_027921, intron 2 of 4)	10788.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	1.72	3.23	3.7	7.42	5.13	1.61	6.34	0.0	5.0
Merged-chr17-35821667-3	chr17	35821180	35822180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133662)	promoter-TSS (NM_133662)	-33.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	197.93	158.51	117.47	172.05	123.62	106.9	176.38	217.55	118.66
Merged-chr7-114163138-3	chr7	114162548	114163548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45267.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	21.17	10.6	12.02	11.47	9.33	24.11	40.14	20.34	32.48
Merged-chr10-99354101-3	chr10	99353576	99354576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90845.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	25.74	28.11	18.5	48.58	35.45	35.37	40.14	35.37	16.24
Merged-chr7-126377465-3	chr7	126376950	126377950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045537, exon 1 of 13)	non-coding (NR_045537, exon 1 of 13)	484.0	NM_023712	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	93.82	94.0	45.32	120.1	99.83	110.12	114.07	76.94	53.08
Merged-chr17-27204470-3	chr17	27203937	27204937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146075)	promoter-TSS (NM_146075)	1.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	106.4	63.59	137.82	128.87	69.51	109.32	111.96	38.91	48.71
Merged-chr8-127829859-3	chr8	127829374	127830374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	448351.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	33.18	33.64	33.3	34.41	17.26	32.96	46.47	35.37	26.23
Merged-chr9-123815652-3	chr9	123815143	123816143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	9166.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	54.92	78.33	65.67	47.9	29.86	51.44	61.26	72.96	65.58
Merged-chr17-7925902-3	chr17	7925400	7926400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-100.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	151.59	130.86	49.95	138.32	121.29	79.58	178.5	201.63	70.57
Merged-chr12-118302159-3	chr12	118301676	118302676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009239)	promoter-TSS (NM_009239)	-736.0	NM_001166385	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	272.3	328.08	257.14	226.03	325.16	238.73	219.69	306.86	163.63
Merged-chr5-106696729-4	chr5	106696236	106697236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026856)	promoter-TSS (NM_026856)	94.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	262.0	279.7	258.99	226.71	251.91	267.66	233.42	211.36	185.48
Merged-chr9-21936927-3	chr9	21936431	21937431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290299)	promoter-TSS (NM_001290299)	-79.0	NM_001290299	235044.0	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	4.58	5.07	5.55	6.75	4.2	3.22	10.56	3.54	1.25
Merged-chr8-120101396-3	chr8	120100900	120101900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133967)	promoter-TSS (NM_133967)	72.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	184.2	171.87	165.57	195.67	198.27	230.69	195.39	220.64	143.64
Merged-chr4-122991383-3	chr4	122990863	122991863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-4568.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	18.31	16.13	1.85	9.45	6.06	8.84	8.45	6.63	8.74
Merged-chr9-116175776-3	chr9	116175273	116176273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	-410.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	370.12	384.75	205.34	395.38	406.8	272.48	268.27	321.01	131.78
Merged-chr7-122823609-3	chr7	122823109	122824109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146850.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	19.45	13.36	22.2	26.99	20.99	31.35	33.8	34.49	22.48
Merged-chr16-92466330-3	chr16	92465830	92466830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081549)	promoter-TSS (NM_001081549)	-161.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	16.02	21.2	12.95	29.69	14.46	35.37	28.52	11.94	13.12
Merged-chr13-96542580-3	chr13	96542067	96543067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164222)	promoter-TSS (NM_001164222)	12.0	NM_012048	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	119.56	110.13	87.87	134.94	100.77	78.77	102.45	72.52	53.08
Merged-chr17-35809651-3	chr17	35809169	35810169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12044.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	35.47	22.58	17.57	41.83	24.26	36.17	32.74	26.09	26.23
Merged-chr11-115199010-3	chr11	115198504	115199504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11517.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	180.2	185.24	114.69	46.56	40.59	63.5	182.72	210.47	106.17
Merged-chr8-90908316-3	chr8	90907811	90908811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	CpG	-23938.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	355.25	298.13	192.39	304.3	217.86	244.35	301.01	220.2	162.38
Merged-chr9-120577308-3	chr9	120576838	120577838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073359)	promoter-TSS (NR_073359)	7.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	232.83	181.09	146.14	221.98	222.99	171.21	208.07	212.24	113.04
Merged-chr16-77084285-3	chr16	77083793	77084793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70224.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	45.76	61.28	51.8	47.23	38.25	45.82	50.7	74.28	42.47
Merged-chr4-148626760-5	chr4	148626239	148627239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131120, exon 1 of 8)	non-coding (NR_131120, exon 1 of 8)	257.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	439.34	470.46	310.78	456.78	466.51	315.89	399.24	377.17	230.45
Merged-chr14-31389997-3	chr14	31389508	31390508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	27669.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	172.76	174.64	106.37	166.66	145.55	156.74	160.54	197.21	104.3
Merged-chr10-127576546-3	chr10	127576058	127577058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 24 of 89)	exon (NM_008512, exon 24 of 89)	-41999.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	34.9	26.26	16.65	35.09	22.39	38.58	39.08	29.63	21.23
Merged-chr14-67007670-3	chr14	67007182	67008182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009761, intron 1 of 5)	intron (NM_009761, intron 1 of 5)	1195.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	64.07	116.58	86.02	61.4	86.3	119.76	64.43	94.62	76.19
Merged-chr4-134396253-3	chr4	134395741	134396741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-79.0	NM_133880	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	13.16	8.75	7.4	15.52	15.86	19.29	25.35	28.3	13.74
Merged-chr6-6542346-3	chr6	6541834	6542834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	36324.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	5.15	5.53	9.25	4.05	5.6	15.27	7.39	5.31	6.25
Merged-chr13-73763573-3	chr13	73763051	73764051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011390)	promoter-TSS (NM_011390)	-109.0	NM_001360694	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	26.89	19.81	34.22	33.74	19.59	45.01	33.8	19.46	25.61
Merged-chr5-122708139-2	chr5	122707634	122708634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310718, intron 1 of 10)	intron (NM_001310718, intron 1 of 10)	590.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	489.68	356.65	173.89	466.23	374.14	233.9	339.04	430.67	181.74
Merged-chr12-34783820-3	chr12	34783330	34784330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	133265.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	67.5	50.69	49.95	59.38	33.59	56.27	72.88	45.54	30.6
Merged-chr3-30793269-3	chr3	30792770	30793770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027016, exon 1 of 8)	5' UTR (NM_027016, exon 1 of 8)	394.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	472.52	443.27	292.29	471.63	522.96	303.03	445.71	363.9	202.97
Merged-chr9-121632134-3	chr9	121631644	121632644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026915, intron 1 of 5)	MLT1F1|LTR|ERVL-MaLR	9449.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	52.06	30.87	22.2	60.05	38.25	17.68	55.98	41.56	14.36
Merged-chr2-50687916-3	chr2	50687412	50688412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221772.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	44.05	34.1	30.52	49.25	41.52	68.32	57.03	38.47	23.73
Merged-chr7-140036529-3	chr7	140036036	140037036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133755)	promoter-TSS (NM_133755)	138.0	NM_001286007	74237.0	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	95.53	100.91	48.1	80.97	80.71	90.02	101.39	67.65	61.83
Merged-chr2-170209389-3	chr2	170208908	170209908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66733.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	45.76	36.4	7.4	40.48	26.59	32.96	77.1	69.86	16.24
Merged-chr4-41774183-1	chr4	41773683	41774683	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347065)	promoter-TSS (NM_001347065)	-7.0	NM_001048179	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	6.29	1.38	1.85	3.37	1.4	1.61	46.47	45.54	36.85
Merged-chr8-75085067-3	chr8	75084564	75085564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8554.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	110.41	134.55	91.57	151.81	148.82	167.19	142.59	160.06	74.94
Merged-chr1-131555323-3	chr1	131554833	131555833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27430.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	28.6	13.36	7.4	32.39	12.6	9.65	28.52	30.95	5.62
Merged-chr11-3184167-3	chr11	3183685	3184685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	L1_Mus1|LINE|L1	9278.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	59.49	57.6	69.37	63.42	70.44	75.56	31.69	15.48	118.66
Merged-chr9-110117296-5	chr9	110116862	110117862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252682, exon 1 of 23)	5' UTR (NM_001252682, exon 1 of 23)	254.0	NM_001252682	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	93.24	110.13	128.57	110.65	144.15	135.04	158.43	100.81	74.94
Merged-chr17-22225654-3	chr17	22225175	22226175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205095)	promoter-TSS (NM_001205095)	-61.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	129.28	229.01	98.05	108.63	186.14	98.06	196.45	197.21	104.92
Merged-chr11-94370961-3	chr11	94370477	94371477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 8 of 30)	intron (NM_029600, intron 8 of 30)	21999.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	29.17	23.5	30.52	80.97	36.85	82.79	65.48	55.27	38.1
Merged-chr12-17881816-3	chr12	17881313	17882313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	191004.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	26.89	44.24	36.07	26.31	24.72	56.27	51.75	36.7	42.47
Merged-chr4-59189277-3	chr4	59188787	59189787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-263.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	88.1	61.28	105.44	121.45	73.71	101.28	132.02	67.21	65.58
Merged-chr10-37259254-3	chr10	37258752	37259752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120326.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	60.07	74.19	54.57	53.3	47.12	65.11	58.09	37.58	50.59
Merged-chr10-54122019-3	chr10	54121563	54122563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	46141.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	24.03	27.65	30.52	18.89	13.53	27.33	22.18	20.34	19.98
Merged-chr17-34604016-5	chr17	34603526	34604526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019403)	promoter-TSS (NM_019403)	-465.0	NM_019403	54197.0	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	162.46	118.42	118.39	113.35	64.38	81.99	157.37	160.06	59.95
Merged-chr10-78482081-3	chr10	78481597	78482597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17149.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	147.59	147.45	98.97	176.78	160.95	142.27	116.18	111.43	74.32
Merged-chr6-129397483-4	chr6	129397018	129398018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001204239, exon 1 of 5)	5' UTR (NM_001204239, exon 1 of 5)	221.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	300.33	301.35	160.94	358.28	231.39	245.96	346.43	416.08	170.5
Merged-chr11-46437462-1	chr11	46436962	46437962	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001104556, intron 1 of 1)	CpG	501.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	183.63	208.27	148.92	201.74	268.24	153.52	201.73	185.27	109.29
Merged-chr10-127668242-3	chr10	127667734	127668734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045171, intron 1 of 1)	intron (NR_045171, intron 1 of 1)	1111.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	214.52	156.21	140.59	219.96	111.5	152.72	217.57	225.06	140.52
Merged-chr4-55824211-3	chr4	55823710	55824710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-291735.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.44	11.98	11.1	12.14	2.33	2.41	7.39	4.86	1.25
Merged-chr5-43877621-3	chr5	43877127	43878127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MTEa|LTR|ERVL-MaLR	8818.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	146.45	176.94	103.59	166.66	109.63	131.82	171.1	156.97	69.32
Merged-chr6-72601943-3	chr6	72601435	72602435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026159, intron 3 of 10)	intron (NM_026159, intron 3 of 10)	3307.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	9.15	8.75	13.87	13.49	5.6	2.41	4.22	10.61	7.49
Merged-chr10-78426557-3	chr10	78426050	78427050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007793, intron 1 of 2)	intron (NM_007793, intron 1 of 2)	880.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	96.11	87.55	87.87	107.28	141.35	94.04	137.3	145.47	71.2
Merged-chr1-13383712-3	chr1	13383212	13384212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-9629.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	21.74	19.81	7.4	15.52	7.93	0.0	29.57	18.13	7.49
Merged-chr16-18066409-3	chr16	18065930	18066930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289813)	promoter-TSS (NM_001289813)	27.0	NM_001289813	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	62.35	37.32	40.7	54.65	25.66	48.23	43.3	25.2	44.34
Merged-chr10-81365853-3	chr10	81365341	81366341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-21.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	126.42	97.23	51.8	123.47	77.44	59.48	82.38	83.57	53.71
Merged-chr17-10500983-3	chr17	10500547	10501547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	44831.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	17.16	7.37	12.02	20.24	14.46	16.08	16.9	11.05	9.99
Merged-chr1-106321606-3	chr1	106321111	106322111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	149742.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	63.5	58.52	8.32	56.68	49.45	35.37	62.31	39.8	34.35
Merged-chr2-172345470-3	chr2	172344960	172345960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025912)	promoter-TSS (NM_025912)	-117.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	25.74	25.34	20.35	35.76	31.26	45.82	26.4	25.2	14.99
Merged-chr16-33380835-3	chr16	33380364	33381364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	89.0	NM_011749	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	183.06	117.5	141.52	128.87	138.55	163.97	194.34	109.66	84.94
Merged-chr7-64248426-1	chr7	64247926	64248926	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 26 of 26)	intron (NM_001039104, intron 26 of 26)	1673.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	3.43	1.38	0.92	2.7	8.86	6.43	2.11	1.77	3.12
Merged-chr6-38552099-3	chr6	38551610	38552610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170848, intron 1 of 8)	CpG	776.0	NM_001170849	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	450.78	279.7	333.91	389.31	226.72	225.06	348.54	306.42	196.73
Merged-chr18-56572937-3	chr18	56572462	56573462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019996)	promoter-TSS (NM_019996)	-23.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	46.91	35.94	37.92	48.58	47.12	82.79	44.36	49.08	49.96
Merged-chr1-58393025-3	chr1	58392526	58393526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025824)	promoter-TSS (NM_025824)	-110.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	247.7	200.9	241.41	224.01	174.47	196.93	245.04	160.95	166.12
Merged-chr19-4839385-3	chr19	4838891	4839891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207268)	promoter-TSS (NM_207268)	25.0	NM_207268	399599.0	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	20.59	21.2	8.32	28.34	28.46	40.99	24.29	15.48	19.98
Merged-chr16-13780735-3	chr16	13780239	13781239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	40.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	222.53	218.41	128.57	210.51	260.31	180.85	264.05	244.52	103.67
Merged-chr12-55836752-3	chr12	55836243	55837243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155205, intron 1 of 10)	CpG	377.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	36.61	38.25	31.45	41.16	55.05	62.7	38.02	52.18	26.85
Merged-chr12-111908171-3	chr12	111907675	111908675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011625)	promoter-TSS (NM_011625)	-120.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	54.92	37.78	46.25	76.92	42.92	53.05	89.78	29.18	36.22
Merged-chr8-14888746-3	chr8	14888226	14889226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_012000, exon 1 of 3)	5' UTR (NM_012000, exon 1 of 3)	190.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	314.63	292.6	156.32	346.13	309.3	250.78	311.57	322.34	161.13
Merged-chr17-88530058-3	chr17	88529536	88530536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028658)	promoter-TSS (NM_028658)	-88.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	73.22	74.65	56.42	75.57	53.65	71.54	102.45	98.6	50.59
Merged-chr1-36369192-3	chr1	36368689	36369689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-8.0	NM_001310513	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	135.0	81.56	120.24	145.74	79.31	78.77	144.7	85.78	55.58
Merged-chr7-83883825-3	chr7	83883346	83884346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030705, exon 1 of 1)	5' UTR (NM_030705, exon 1 of 1)	495.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	226.53	214.26	300.61	196.34	186.6	218.63	199.62	177.75	167.37
Merged-chr10-84576480-3	chr10	84575885	84576885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	-562.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	147.02	169.11	132.27	161.93	181.47	135.04	233.42	231.25	99.92
Merged-chr9-56108355-3	chr9	56107842	56108842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	18366.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	50.91	47.92	34.22	68.82	39.65	69.93	69.71	57.48	33.72
Merged-chr7-99377652-3	chr7	99377152	99378152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-3866.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	132.14	126.25	124.87	128.87	104.03	90.83	124.63	161.39	79.32
Merged-chr13-13590286-3	chr13	13589801	13590801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-108.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	58.35	68.66	34.22	68.15	59.25	44.21	94.0	87.99	34.97
Merged-chr16-10543073-3	chr16	10542507	10543507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021428)	promoter-TSS (NM_021428)	47.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	17.16	14.28	9.25	16.87	9.8	15.27	23.24	12.38	11.24
Merged-chr11-61407998-3	chr11	61407523	61408523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29948.0	NM_026183	67473.0	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	132.14	144.69	127.64	151.81	167.94	159.15	157.37	241.87	119.91
Merged-chr1-180835836-3	chr1	180835322	180836322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-15329.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	93.24	56.22	52.72	86.36	78.37	86.01	60.2	80.47	62.45
Merged-chr6-125509940-1	chr6	125509440	125510440	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15180.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.29	2.3	1.85	4.05	3.73	3.22	9.51	3.98	6.87
Merged-chr16-77016171-3	chr16	77015680	77016680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	2111.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	79.52	126.25	53.65	87.71	65.31	62.7	91.89	107.0	47.46
Merged-chr1-23256156-3	chr1	23255644	23256644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16125.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	135.0	86.17	61.05	134.94	80.71	56.27	101.39	56.16	39.35
Merged-chr17-45552253-3	chr17	45551783	45552783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2606.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	4.58	0.92	1.85	6.75	1.87	0.0	5.28	3.1	8.74
Merged-chr3-30995794-3	chr3	30995292	30996292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	21.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	107.55	86.63	56.42	116.73	104.5	95.65	113.01	117.17	56.21
Merged-chr7-27196320-3	chr7	27195819	27196819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015782)	promoter-TSS (NM_015782)	-48.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	271.15	279.24	218.29	242.22	263.58	216.22	273.55	307.31	128.03
Merged-chr10-127643870-3	chr10	127643380	127644380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 1 of 21)	intron (NM_009284, intron 1 of 21)	894.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	397.01	285.23	227.54	342.76	234.19	227.47	383.4	441.73	191.73
Merged-chr13-98872649-3	chr13	98872128	98873128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	18414.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	56.06	73.73	46.25	49.93	34.06	69.93	29.57	57.04	36.85
Merged-chr1-191326421-3	chr1	191325932	191326932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	CpG	467.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	223.67	175.1	197.02	202.42	158.61	184.87	224.97	237.0	143.02
Merged-chr8-66438698-3	chr8	66438190	66439190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	47840.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	57.78	79.72	73.07	73.54	41.99	80.38	62.31	73.84	63.08
Merged-chr12-69184069-3	chr12	69183479	69184479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	88.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	438.19	465.85	257.14	427.1	356.41	290.97	327.42	326.32	209.84
Merged-chr11-71144844-3	chr11	71144358	71145358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004142)	promoter-TSS (NM_001004142)	-154.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	50.34	35.02	15.72	31.71	30.32	40.19	44.36	27.86	32.48
Merged-chr1-186117357-3	chr1	186116856	186117856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146106)	promoter-TSS (NM_146106)	-46.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	174.48	168.19	94.35	177.45	209.93	112.53	172.16	163.16	54.96
Merged-chr3-7502896-3	chr3	7502405	7503405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	-521.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	24.03	29.03	22.2	47.23	29.39	43.4	26.4	42.01	20.61
Merged-chr3-149464810-3	chr3	149464308	149465308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	190071.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	28.6	23.96	12.02	32.39	15.39	25.72	26.4	30.07	19.98
Merged-chr17-72837464-3	chr17	72836958	72837958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357370)	promoter-TSS (NM_001357370)	-78.0	NM_001357369	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	331.22	211.96	247.89	360.3	185.2	194.52	327.42	243.19	120.53
Merged-chr9-112079146-1	chr9	112078646	112079646	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362012, intron 18 of 19)	intron (NM_001362012, intron 18 of 19)	39565.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	4.58	2.76	3.7	6.75	5.6	0.0	4.22	1.33	5.0
Merged-chr5-3344436-3	chr5	3343920	3344920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009873, exon 2 of 8)	exon (NM_009873, exon 2 of 8)	527.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	127.0	120.26	79.55	197.02	197.33	131.82	153.15	178.19	79.32
Merged-chr7-55911558-3	chr7	55911038	55912038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	50955.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	235.11	268.18	169.27	228.73	204.33	237.92	252.43	311.73	170.5
Merged-chr2-13538431-3	chr2	13537947	13538947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	MIR|SINE|MIR	6217.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	93.82	124.87	71.22	74.22	105.43	87.61	106.67	121.15	58.08
Merged-chr1-63181210-3	chr1	63180711	63181711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018796)	TTS (NM_018796)	2188.0	NR_028558	100217464.0	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	7.44	11.52	13.87	14.84	9.8	7.23	7.39	6.63	8.74
Merged-chr13-9082355-3	chr13	9081869	9082869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11512.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	145.3	168.19	86.95	153.84	164.68	139.86	149.98	191.02	78.69
Merged-chr12-69241974-3	chr12	69241481	69242481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178253, exon 1 of 13)	exon (NM_178253, exon 1 of 13)	149.0	NM_178253	271005.0	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	43.48	52.99	68.45	39.13	48.98	63.5	76.05	61.46	55.58
Merged-chr19-29463820-3	chr19	29463343	29464343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	52924.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	105.83	90.31	72.15	138.32	91.9	86.01	110.9	127.79	51.84
Merged-chr7-80404310-3	chr7	80403819	80404819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081454, intron 1 of 15)	intron (NM_001081454, intron 1 of 15)	1117.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	178.48	153.9	103.59	203.76	161.88	146.29	145.75	190.57	108.04
Merged-chr11-22287175-3	chr11	22286665	22287665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153078)	promoter-TSS (NM_153078)	-370.0	NM_001252515	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	21.17	14.28	14.8	31.71	20.06	21.7	32.74	14.59	9.99
Merged-chr13-113615871-6	chr13	113615477	113616477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	2587.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	332.36	272.32	188.69	325.89	266.84	226.67	286.23	313.94	202.35
Merged-chr9-65569656-3	chr9	65569165	65570165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	intron (NM_153119, intron 2 of 5)	10422.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	382.7	302.27	186.84	375.82	250.52	254.0	257.71	326.32	179.86
Merged-chr10-17684028-3	chr10	17683535	17684535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39193.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	47.48	61.28	47.17	70.17	38.72	57.07	77.1	76.05	43.09
Merged-chr11-61469043-3	chr11	61468539	61469539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15047.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	330.07	321.17	193.32	359.62	271.51	259.62	323.19	471.79	141.77
Merged-chr4-148088094-3	chr4	148087616	148088616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301281)	promoter-TSS (NM_001301281)	-52.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	90.38	88.01	86.02	76.24	85.37	146.29	124.63	93.74	101.8
Merged-chr5-143055762-3	chr5	143055245	143056245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	57275.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	74.94	74.19	74.92	53.98	46.65	86.81	41.19	65.88	89.31
Merged-chr7-16048343-3	chr7	16047883	16048883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23462.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	144.16	135.47	110.99	137.64	134.82	124.59	97.17	111.43	74.94
Merged-chr17-3314347-3	chr17	3313848	3314848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12225.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	5.15	1.38	7.4	5.4	2.33	1.61	3.17	1.33	3.75
Merged-chr16-91849070-3	chr16	91848592	91849592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 20 of 28)	intron (NM_001110275, intron 20 of 28)	82538.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	224.25	211.96	174.82	286.08	198.73	196.93	261.93	268.84	153.01
Merged-chr12-116054572-3	chr12	116054077	116055077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	6853.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	34.9	64.97	65.67	48.58	58.31	61.89	51.75	46.87	53.08
Merged-chr11-87748867-3	chr11	87748382	87749382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7982.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	282.02	312.41	202.56	223.33	249.12	228.28	307.35	368.33	152.38
Merged-chr18-6241477-3	chr18	6240964	6241964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	60.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	166.47	268.18	181.29	193.64	204.33	193.71	221.8	177.31	131.78
Merged-chr4-53158861-3	chr4	53158361	53159361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1034.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	300.9	259.42	147.07	295.53	271.51	266.05	290.45	386.9	125.53
Merged-chr10-128058950-3	chr10	128058472	128059472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019766)	promoter-TSS (NM_019766)	-10.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	468.51	425.76	317.26	437.22	447.85	290.97	318.97	373.63	251.68
Merged-chr1-179546315-3	chr1	179545769	179546769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146105)	promoter-TSS (NM_146105)	7.0	NM_001331054	15278.0	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	94.39	104.14	95.27	85.01	116.16	116.55	129.91	118.5	91.81
Merged-chr8-105827726-1	chr8	105827226	105828226	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-18.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	54.35	52.53	27.75	42.51	26.12	24.92	44.36	39.8	31.85
Merged-chr13-54688211-3	chr13	54687689	54688689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	11.0	NM_001146027	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	444.49	400.42	242.34	375.82	311.16	217.02	328.47	361.69	158.01
Merged-chr5-139017904-3	chr5	139017407	139018407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22954.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	116.13	101.83	49.95	137.64	121.29	106.1	158.43	140.61	81.81
Merged-chr10-118611231-3	chr10	118610729	118611729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54704.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	17.16	19.35	8.32	35.09	19.13	37.78	30.63	26.97	16.24
Merged-chr17-79485458-1	chr17	79484958	79485958	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7573.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	1.14	0.92	3.7	3.37	0.93	1.61	15.84	10.61	5.0
Merged-chr16-4726364-3	chr16	4725810	4726810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136066)	promoter-TSS (NM_001136066)	-51.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	151.02	169.11	147.99	171.38	175.41	155.13	193.28	187.04	136.77
Merged-chr11-103436481-3	chr11	103435992	103436992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23828.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	17.16	11.06	12.95	10.8	5.6	5.63	14.79	6.19	8.12
Merged-chr6-8691433-3	chr6	8690941	8691941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	67017.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	28.03	27.65	11.1	39.13	33.12	32.96	21.12	24.76	28.73
Merged-chr19-41848266-3	chr19	41847769	41848769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177603)	promoter-TSS (NM_177603)	-137.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	104.69	53.45	79.55	98.51	71.38	53.85	124.63	83.57	34.97
Merged-chr19-55774992-3	chr19	55774502	55775502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	33192.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	37.18	36.86	32.37	54.65	34.99	17.68	40.14	47.31	23.11
Merged-chr15-103240918-3	chr15	103240420	103241420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039129, intron 1 of 10)	intron (NM_001039129, intron 1 of 10)	466.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	318.06	270.02	167.42	307.67	264.04	195.32	265.1	322.78	156.13
Merged-chr13-20140256-3	chr13	20139772	20140772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	49765.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	49.77	26.26	28.67	35.09	17.26	32.15	34.85	25.2	21.23
Merged-chr11-102230200-3	chr11	102229685	102230685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284250)	promoter-TSS (NM_001284250)	-13.0	NM_001284250	15184.0	Mm.22665	NM_010412	ENSMUSG00000008855	Hdac5	AI426555|Hdac4|mHDA1|mKIAA0600	histone deacetylase 5	protein-coding	174.48	137.31	131.34	190.27	141.35	129.41	188.0	148.13	94.3
Merged-chr10-41386054-3	chr10	41385551	41386551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-64307.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	74.94	97.69	81.4	83.66	81.64	77.16	100.34	94.18	72.45
Merged-chr8-124586825-2	chr8	124586324	124587324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023709, intron 1 of 19)	intron (NM_023709, intron 1 of 19)	10713.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	15.45	5.99	7.4	8.1	2.8	8.84	2.11	0.44	3.12
Merged-chr9-31280449-3	chr9	31279965	31280965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9064.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	252.85	247.9	224.76	304.97	221.59	218.63	335.87	248.5	162.38
Merged-chr17-26168191-3	chr17	26167703	26168703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159598, intron 2 of 9)	ORR1B1|LTR|ERVL-MaLR	29517.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	22.31	26.26	12.95	27.66	17.26	30.54	31.69	18.13	14.36
Merged-chr11-44470033-1	chr11	44469533	44470533	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024475, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	515.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	68.07	41.93	53.65	67.47	36.85	47.42	115.12	70.75	44.34
Merged-chr3-59120698-3	chr3	59120184	59121184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	MER20|DNA|hAT-Charlie	10078.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	43.48	32.72	30.52	38.46	27.06	38.58	27.46	28.3	17.49
Merged-chr17-67329615-3	chr17	67329109	67330109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	24850.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	159.03	183.85	132.27	149.11	159.08	110.92	217.57	229.93	99.3
Merged-chr11-24185140-3	chr11	24184641	24185641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104446.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	6.86	5.53	1.85	6.07	6.06	6.43	5.28	3.1	6.25
Merged-chr12-105784574-3	chr12	105784076	105785076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347440)	promoter-TSS (NM_001347440)	-121.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	256.28	215.65	208.11	248.3	183.34	139.86	232.36	143.26	138.65
Merged-chr16-8667471-3	chr16	8666970	8667970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	4683.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	77.23	58.52	41.62	93.11	80.24	103.69	130.97	132.21	50.59
Merged-chr3-95043101-3	chr3	95042606	95043606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-492.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	110.41	176.94	108.22	99.86	153.01	127.8	149.98	192.34	81.19
Merged-chr14-120263596-3	chr14	120263098	120264098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12071.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	112.69	92.62	73.07	108.63	102.63	84.4	102.45	98.16	81.81
Merged-chr16-32595384-3	chr16	32594879	32595879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13517.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	41.19	49.3	33.3	37.11	23.33	37.78	17.96	11.05	19.98
Merged-chr13-113600854-3	chr13	113600361	113601361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17703.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	168.76	137.31	58.27	227.38	144.15	114.94	141.53	210.47	86.18
Merged-chr7-99151519-3	chr7	99151027	99152027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10383.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	38.33	8.75	8.32	27.66	6.53	2.41	9.51	8.84	9.99
Merged-chr7-19228203-3	chr7	19227713	19228713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-176.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	437.05	421.16	276.56	439.24	406.8	275.7	337.98	456.32	200.47
Merged-chr7-123371168-3	chr7	123370672	123371672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1257.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	298.04	361.72	204.41	250.99	289.7	238.73	264.05	340.03	205.47
Merged-chr11-21424512-3	chr11	21424005	21425005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B2|LTR|ERVK	-53238.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	48.62	53.45	32.37	55.33	40.12	61.89	32.74	52.18	35.6
Merged-chr6-38938647-3	chr6	38938152	38939152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	19666.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	252.28	233.62	163.72	268.54	190.8	149.5	190.11	227.27	128.65
Merged-chr16-20672728-3	chr16	20672228	20673228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	1.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	168.18	116.12	126.72	172.73	101.7	104.49	252.43	136.63	75.57
Merged-chr18-23752285-3	chr18	23751760	23752760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	45.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	136.72	136.39	44.4	177.45	155.81	98.87	116.18	116.73	80.56
Merged-chr7-19822795-3	chr7	19822282	19823282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-27.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	278.02	204.59	178.52	260.44	146.48	165.58	341.15	246.29	128.65
Merged-chr10-128696429-3	chr10	128695930	128696930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177411)	promoter-TSS (NM_177411)	-162.0	NM_177411	19344.0	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	201.93	188.46	187.77	174.08	149.28	174.42	155.26	189.25	142.39
Merged-chr10-53928098-3	chr10	53927618	53928618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	147678.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	74.37	72.8	54.57	109.3	105.9	58.68	55.98	49.96	26.23
Merged-chrX-38600578-3	chrX	38600102	38601102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356360)	promoter-TSS (NM_001356360)	131.0	NM_001361381	68995.0	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	66.36	97.23	60.12	48.58	61.11	77.16	78.16	85.78	39.97
Merged-chr11-110993792-3	chr11	110993300	110994300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-3687.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	125.28	174.64	88.8	132.24	107.76	89.22	118.29	166.25	118.04
Merged-chr14-54756576-3	chr14	54756087	54757087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	25299.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	141.3	100.45	135.97	147.09	144.62	168.8	204.9	263.53	184.86
Merged-chr9-83834572-3	chr9	83834050	83835050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009445)	promoter-TSS (NM_009445)	-139.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	221.96	165.42	140.59	194.99	147.88	137.45	186.94	186.59	69.32
Merged-chr6-31126531-3	chr6	31126010	31127010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-63417.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	352.96	365.4	182.22	433.84	308.83	188.89	254.54	375.84	142.39
Merged-chr16-57228830-3	chr16	57228336	57229336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	MTC|LTR|ERVL-MaLR	2630.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	73.79	67.27	35.15	62.07	37.79	67.52	100.34	89.32	71.2
Merged-chr12-84761434-3	chr12	84760915	84761915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	MLTR14|LTR|ERV1	11697.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	246.56	239.61	109.14	237.5	176.81	154.33	212.29	238.77	93.05
Merged-chr7-105778611-3	chr7	105778091	105779091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	8959.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	66.93	44.7	47.17	74.22	45.72	64.3	89.78	57.48	42.47
Merged-chr18-83853977-3	chr18	83853486	83854486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	232576.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	46.34	17.05	23.12	42.51	14.93	15.27	44.36	17.69	11.87
Merged-chr7-116443503-3	chr7	116443019	116444019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	-61.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	149.88	130.4	147.99	135.62	135.75	156.74	143.64	137.96	117.41
Merged-chr2-30693426-3	chr2	30692914	30693914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15403.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	86.95	42.39	12.95	75.57	55.51	36.17	29.57	22.99	13.12
Merged-chr5-36748666-3	chr5	36748171	36749171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133724)	promoter-TSS (NM_133724)	8.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	132.72	115.66	138.74	120.77	102.17	142.27	139.42	107.89	84.94
Merged-chr10-96274192-3	chr10	96273708	96274708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48001.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	22.31	17.51	16.65	27.66	23.79	18.49	21.12	18.57	9.37
Merged-chr6-114648800-3	chr6	114648312	114649312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	5715.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	232.83	227.17	101.74	190.27	174.01	156.74	180.61	194.55	118.66
Merged-chr7-45523970-3	chr7	45523479	45524479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008654, exon 2 of 3)	exon (NM_008654, exon 2 of 3)	2289.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	125.85	92.16	52.72	114.7	49.92	61.09	87.66	70.3	50.59
Merged-chr14-55635772-3	chr14	55635277	55636277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024267)	promoter-TSS (NM_024267)	-93.0	NM_024267	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	58.92	73.26	39.77	71.52	70.44	42.6	57.03	44.66	44.34
Merged-chr8-125012963-3	chr8	125012443	125013443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016909)	promoter-TSS (NM_016909)	-54.0	NM_016909	53424.0	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	34.9	32.25	21.27	41.83	28.92	53.85	38.02	39.8	34.35
Merged-chr2-27308640-3	chr2	27308137	27309137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	MTE2a|LTR|ERVL-MaLR	-61334.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	98.39	77.87	61.97	93.11	79.31	78.77	52.81	48.64	34.35
Merged-chr16-8862466-3	chr16	8861959	8862959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32359.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	15.45	13.36	14.8	20.92	15.86	27.33	13.73	8.4	12.49
Merged-chr11-117781708-3	chr11	117781206	117782206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	-591.0	NM_001195090	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	353.53	356.19	283.96	441.94	391.4	340.81	402.41	463.39	226.7
Merged-chr10-51480209-1	chr10	51479709	51480709	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-403.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	116.7	89.39	70.3	168.68	81.17	100.47	105.62	97.28	64.95
Merged-chr16-42875583-3	chr16	42875088	42876088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040521)	promoter-TSS (NR_040521)	-1.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	184.77	108.28	102.67	127.52	84.9	80.38	172.16	126.9	55.58
Merged-chr6-85434092-3	chr6	85433599	85434599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	2123.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	65.79	81.1	78.62	62.75	41.05	93.24	105.62	147.68	66.2
Merged-chr14-122376825-3	chr14	122376337	122377337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 4 of 7)	intron (NM_029556, intron 4 of 7)	74278.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	13.16	10.6	20.35	12.14	15.86	17.68	11.62	24.76	6.25
Merged-chr1-38013322-3	chr1	38012803	38013803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	15293.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	98.97	123.03	103.59	119.43	136.22	108.51	111.96	162.72	79.32
Merged-chr1-52233325-3	chr1	52232813	52233813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113383)	promoter-TSS (NM_001113383)	-81.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	126.42	83.4	86.95	139.67	85.37	109.32	140.47	100.81	85.56
Merged-chr19-29368611-3	chr19	29368092	29369092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1154.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	102.4	122.11	92.5	85.01	73.24	67.52	145.75	168.47	87.43
Merged-chr15-100423107-3	chr15	100422609	100423609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356952)	promoter-TSS (NM_001356952)	-54.0	NM_008732	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	307.76	195.83	153.54	233.45	188.0	109.32	203.84	181.73	102.42
Merged-chr12-70227735-3	chr12	70227234	70228234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	-51.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	41.76	34.1	37.92	50.6	33.59	62.7	74.99	55.71	46.22
Merged-chr1-156674885-3	chr1	156674387	156675387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-548.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	292.32	286.15	183.14	301.6	216.46	259.62	231.3	226.83	128.03
Merged-chr2-92059643-3	chr2	92059148	92060148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35478.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	22.88	12.9	3.7	26.99	20.06	9.65	28.52	15.48	5.62
Merged-chr19-11336166-3	chr19	11335708	11336708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025610)	promoter-TSS (NM_001025610)	-62.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	100.68	105.06	48.1	93.11	69.98	47.42	86.61	89.32	57.46
Merged-chr12-119372548-3	chr12	119372054	119373054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70856.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	53.2	47.92	27.75	46.56	36.39	40.19	59.15	65.88	33.1
Merged-chr4-148448460-3	chr4	148447945	148448945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020009)	promoter-TSS (NM_020009)	-137.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	65.79	69.58	70.3	79.62	66.24	65.11	102.45	111.43	60.58
Merged-chr12-51865968-3	chr12	51865467	51866467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36431.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	423.89	386.14	160.94	493.22	487.97	271.68	364.38	280.78	196.1
Merged-chr13-48965784-3	chr13	48965294	48966294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	2034.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	76.08	99.53	83.25	69.5	73.71	88.42	85.55	121.6	88.68
Merged-chr4-154964273-4	chr4	154963811	154964811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172990, intron 1 of 18)	CpG	188.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	113.27	94.0	83.25	153.84	87.24	104.49	95.06	65.44	58.08
Merged-chr5-134099699-3	chr5	134099206	134100206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030719)	promoter-TSS (NM_030719)	-42.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	41.76	35.48	40.7	58.7	36.85	56.27	58.09	59.69	36.22
Merged-chr5-65247477-3	chr5	65246982	65247982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153391, exon 28 of 37)	exon (NM_153391, exon 28 of 37)	47786.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	67.5	88.93	76.77	103.91	91.44	104.49	109.84	129.55	91.18
Merged-chr18-23749803-3	chr18	23749298	23750298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126066)	TTS (NR_126066)	2507.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	32.61	23.96	13.87	53.3	37.79	14.47	30.63	30.07	24.98
Merged-chr17-40880438-3	chr17	40879940	40880940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027834, exon 1 of 2)	exon (NM_027834, exon 1 of 2)	118.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	69.22	96.76	100.82	18.89	23.33	11.25	113.01	113.19	73.07
Merged-chr7-46830924-3	chr7	46830427	46831427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14877.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	237.97	264.49	147.99	250.99	279.91	197.73	258.77	332.51	139.89
Merged-chr6-39278531-3	chr6	39278022	39279022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71749.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	22.88	24.88	14.8	24.96	39.19	53.05	25.35	10.17	28.73
Merged-chr7-110313585-3	chr7	110313079	110314079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 37 of 40)	intron (NM_177324, intron 37 of 40)	91876.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	49.77	64.97	61.05	68.15	36.85	57.87	34.85	45.99	52.46
Merged-chrX-167329803-3	chrX	167329307	167330307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	764.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	105.26	135.01	73.07	160.58	99.37	57.87	133.08	155.64	77.44
Merged-chr17-26605797-3	chr17	26605302	26606302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	44290.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	114.41	69.58	37.92	122.12	101.23	68.32	23.24	20.34	11.24
Merged-chr17-29498262-3	chr17	29497768	29498768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7223.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	38.33	34.56	31.45	33.74	14.46	47.42	36.97	27.86	33.1
Merged-chr1-171851724-3	chr1	171851233	171852233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	12036.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	65.79	67.27	41.62	89.06	79.31	73.14	111.96	132.21	78.07
Merged-chr7-17027746-3	chr7	17027254	17028254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011155, exon 1 of 13)	exon (NM_011155, exon 1 of 13)	160.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	138.44	165.88	103.59	147.09	140.42	129.41	208.07	219.31	73.07
Merged-chr17-47737031-3	chr17	47736532	47737532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-5.0	NM_001161722	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	108.69	88.01	110.99	83.66	76.97	107.71	135.19	77.82	48.71
Merged-chr10-99270594-3	chr10	99270102	99271102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7371.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	30.89	14.75	4.62	37.11	5.6	19.29	24.29	7.52	10.62
Merged-chr14-66873539-3	chr14	66873009	66874009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4659.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	53.77	47.46	52.72	43.86	21.46	76.36	49.64	53.06	43.09
Merged-chr18-54970989-3	chr18	54970501	54971501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	19179.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	117.84	142.38	81.4	112.68	105.9	79.58	50.7	66.33	57.46
Merged-chr12-79136038-3	chr12	79135543	79136543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	5255.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	37.18	41.93	31.45	99.18	67.64	90.83	43.3	68.98	39.35
Merged-chr10-58399586-3	chr10	58399091	58400091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	5218.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	21.17	23.5	30.52	19.57	15.86	28.94	19.01	16.8	19.98
Merged-chr8-19703339-1	chr8	19702839	19703839	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26237.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	8.01	5.53	6.47	6.75	10.73	8.04	1.06	7.52	8.74
Merged-chr15-57892537-3	chr15	57892047	57893047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-129.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	362.11	270.94	203.49	302.27	268.24	193.71	229.19	271.05	126.78
Merged-chr16-93711161-3	chr16	93710674	93711674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-733.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	57.21	52.07	58.27	58.7	44.32	78.77	71.82	48.64	42.47
Merged-chr19-53314321-3	chr19	53313842	53314842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	2897.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	160.75	107.36	62.9	173.4	101.7	98.87	110.9	104.79	47.46
Merged-chr10-111721216-3	chr10	111720730	111721730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126957.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	24.6	13.82	12.95	18.89	13.53	25.72	19.01	20.34	11.24
Merged-chr16-55504941-3	chr16	55504457	55505457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10226.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	87.52	54.83	53.65	89.74	57.85	40.99	78.16	49.96	38.72
Merged-chr13-112440149-3	chr13	112439641	112440641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23929.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	22.88	15.21	11.1	25.64	13.53	20.09	16.9	22.99	9.99
Merged-chr10-80677970-3	chr10	80677464	80678464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1671.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	619.53	561.7	336.68	622.76	552.81	426.81	503.8	726.92	299.15
Merged-chr1-107481643-3	chr1	107481139	107482139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29784.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	3.43	10.14	0.0	4.05	1.4	0.0	1.06	3.98	3.75
Merged-chr10-95357242-1	chr10	95356742	95357742	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20966.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	22.88	17.51	17.57	20.24	5.6	14.47	63.37	53.94	34.97
Merged-chr12-3235798-2	chr12	3235292	3236292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	1.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	393.0	422.54	264.54	394.04	378.34	241.94	396.07	497.0	170.5
Merged-chr18-39137596-3	chr18	39137089	39138089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144444.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	78.94	125.79	61.05	105.26	101.23	70.73	99.28	126.46	43.09
Merged-chr11-20930815-3	chr11	20930312	20931312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99704.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	36.61	34.1	14.8	33.74	34.52	28.13	16.9	29.63	26.85
Merged-chr6-122854746-3	chr6	122854231	122855231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	1426.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	419.32	428.53	149.84	437.22	398.4	234.71	365.44	444.38	168.62
Merged-chr11-68853151-3	chr11	68852637	68853637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-6.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	459.93	419.31	333.91	398.76	393.27	299.81	354.88	388.22	239.82
Merged-chr3-130709709-3	chr3	130709205	130710205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-261.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	161.89	170.95	85.1	147.76	148.82	107.71	178.5	168.91	73.69
Merged-chr6-83502849-3	chr6	83502368	83503368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4101.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	144.16	126.72	123.94	151.14	109.16	106.1	126.74	149.01	99.3
Merged-chr18-60774536-3	chr18	60774064	60775064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020600)	promoter-TSS (NM_020600)	-32.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	187.06	218.87	155.39	195.67	224.39	155.93	240.81	217.55	129.28
Merged-chr6-29768325-3	chr6	29767814	29768814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021414)	promoter-TSS (NM_021414)	-129.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	178.48	126.25	130.42	195.67	152.55	143.07	147.87	139.28	84.94
Merged-chr17-84188655-3	chr17	84188156	84189156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-709.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	216.24	190.3	172.97	192.29	159.08	170.4	125.69	168.02	126.78
Merged-chr11-114927355-3	chr11	114926847	114927847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7039.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	159.03	119.34	113.77	212.54	95.17	153.52	142.59	159.18	111.79
Merged-chr11-97150133-3	chr11	97149638	97150638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-426.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	110.41	61.28	97.12	114.03	79.77	116.55	118.29	130.88	49.96
Merged-chr5-137631779-1	chr5	137631279	137632279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2656.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	66.36	49.76	54.57	66.12	37.32	65.11	57.03	71.19	42.47
Merged-chr6-97486189-3	chr6	97485681	97486681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1639.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	220.24	236.84	107.29	244.92	202.93	163.97	200.68	217.99	146.14
Merged-chr4-3627174-2	chr4	3626670	3627670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-29336.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	223.67	174.64	107.29	213.21	143.22	153.52	194.34	192.34	89.93
Merged-chr6-81446288-3	chr6	81445793	81446793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	449370.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	52.63	61.28	38.85	27.66	29.86	40.99	45.42	95.51	58.08
Merged-chr16-33954916-3	chr16	33954413	33955413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	12125.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	50.34	55.29	29.6	31.71	32.66	39.39	61.26	46.87	33.1
Merged-chr16-3872368-3	chr16	3871865	3872865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033159)	promoter-TSS (NM_001033159)	9.0	NM_001033159	71063.0	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	32.61	39.17	42.55	26.31	27.06	40.19	21.12	20.78	17.49
Merged-chr13-89378570-1	chr13	89378070	89379070	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-162066.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	15.45	16.59	19.42	8.1	6.53	6.43	27.46	34.49	25.61
Merged-chr3-106788145-3	chr3	106787661	106788661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1988.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	218.52	268.64	124.87	182.85	206.2	163.97	219.69	246.29	133.65
Merged-chr6-17764498-3	chr6	17763996	17764996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	15326.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	34.9	48.84	26.82	29.01	22.39	30.54	57.03	46.87	36.22
Merged-chr3-88178190-3	chr3	88177685	88178685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	-400.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	376.98	334.99	193.32	363.67	308.36	223.45	328.47	354.18	139.27
Merged-chr5-112326286-3	chr5	112325765	112326765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-104.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	421.6	394.89	262.69	406.85	383.0	301.42	347.48	371.86	182.99
Merged-chr11-6200205-3	chr11	6199694	6200694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173748, exon 1 of 6)	5' UTR (NM_173748, exon 1 of 6)	257.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	342.09	444.66	288.59	306.32	445.98	308.65	346.43	369.65	175.49
Merged-chr16-44746320-3	chr16	44745800	44746800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356392)	promoter-TSS (NM_001356392)	63.0	NM_001356392	66067.0	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	81.8	77.41	68.45	82.99	85.84	86.81	81.33	109.22	74.32
Merged-chr4-139252146-3	chr4	139251658	139252658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58047.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	109.83	80.64	86.95	96.48	63.91	108.51	126.74	144.15	77.44
Merged-chr12-111672321-3	chr12	111671821	111672821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021273)	promoter-TSS (NM_021273)	17.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	164.75	130.4	70.3	130.9	117.09	106.1	119.35	115.41	110.54
Merged-chr18-61105780-3	chr18	61105303	61106303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001037859, exon 2 of 22)	5' UTR (NM_001037859, exon 2 of 22)	231.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	89.24	95.38	75.85	115.38	87.24	106.9	132.02	117.17	105.55
Merged-chr6-126910918-3	chr6	126910419	126911419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	10920.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	72.08	82.48	43.47	62.07	63.45	57.07	83.44	83.13	38.72
Merged-chr7-66388308-3	chr7	66387825	66388825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	16.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	172.19	235.0	215.51	149.79	164.68	167.99	215.46	209.15	148.01
Merged-chr6-125481902-3	chr6	125481348	125482348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12912.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	38.9	23.04	27.75	33.06	19.13	23.31	71.82	63.67	24.98
Merged-chr18-32407478-3	chr18	32406925	32407925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29141.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	48.62	41.01	37.0	47.23	30.79	50.64	68.65	46.87	45.59
Merged-chr1-74387007-3	chr1	74386500	74387500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013612)	TTS (NM_013612)	-4609.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	185.35	199.52	172.97	174.08	118.96	128.61	226.02	167.58	128.03
Merged-chrX-12089794-3	chrX	12089286	12090286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-9233.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	21.17	17.51	6.47	21.59	9.33	6.43	17.96	13.27	13.74
Merged-chr2-165321003-3	chr2	165320514	165321514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-188.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	198.5	144.69	234.01	196.34	149.75	182.46	216.52	221.97	116.16
Merged-chr10-128626856-3	chr10	128626403	128627403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013765)	promoter-TSS (NM_013765)	-397.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	96.68	108.75	61.05	86.36	76.04	49.03	102.45	99.93	51.21
Merged-chr8-3500478-3	chr8	3499976	3500976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053177)	promoter-TSS (NM_053177)	-43.0	NM_053177	94178.0	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	89.81	97.69	58.27	142.37	117.56	131.02	160.54	86.22	49.34
Merged-chr17-17234789-3	chr17	17234224	17235224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362181)	promoter-TSS (NM_001362181)	-179.0	NM_001362181	102640673.0		NM_001362181		LOC102640673	-	zinc finger protein 431-like	protein-coding	82.95	79.72	75.85	69.5	52.25	78.77	96.11	94.18	53.08
Merged-chr13-28600999-3	chr13	28600493	28601493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	109880.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	73.22	52.07	74.92	63.42	55.98	69.13	80.27	73.84	49.96
Merged-chr3-87885747-3	chr3	87885247	87886247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-185.0	NM_033573	94315.0	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	83.52	111.51	88.8	82.99	97.03	71.54	110.9	80.03	74.32
Merged-chr2-170002772-3	chr2	170002283	170003283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	YREP_Mm|Unknown|Unknown	-39596.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	12.59	3.69	12.95	11.47	7.0	3.22	5.28	3.1	2.5
Merged-chr16-58498593-3	chr16	58498088	58499088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	24838.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	154.45	115.2	51.8	146.41	118.49	83.59	111.96	130.88	71.82
Merged-chr12-35066731-3	chr12	35066227	35067227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	Lx8|LINE|L1	19538.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	47.48	50.23	35.15	57.35	53.65	30.54	50.7	30.07	37.47
Merged-chr5-107437865-3	chr5	107437388	107438388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-109.0	NM_001255991	100503185.0	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	25.74	24.88	38.85	29.69	27.52	41.8	38.02	23.43	27.48
Merged-chr3-32529450-3	chr3	32528950	32529950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-32.0	NM_024200	67414.0	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	32.61	18.89	16.65	32.39	32.66	39.39	46.47	28.3	13.12
Merged-chrX-20662840-3	chrX	20662341	20663341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136085)	promoter-TSS (NM_001136085)	-55.0	NM_001136085	22201.0	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	49.77	51.61	57.35	52.63	48.98	45.01	58.09	60.13	26.85
Merged-chr14-103346858-3	chr14	103346363	103347363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-63.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	149.88	130.86	113.77	152.49	130.16	98.87	122.52	122.48	91.18
Merged-chr8-70805074-3	chr8	70804579	70805579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3370.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	44.62	24.88	28.67	40.48	24.72	44.21	39.08	36.7	32.48
Merged-chr2-158624887-3	chr2	158624393	158625393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175419)	promoter-TSS (NM_175419)	-20.0	NM_175419	109275.0	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	106.4	107.36	89.72	106.61	93.77	97.26	110.9	77.82	54.96
Merged-chr9-77910146-3	chr9	77909650	77910650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7215.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	238.55	202.75	127.64	312.39	247.25	211.4	288.34	245.4	82.44
Merged-chr12-40585776-3	chr12	40585306	40586306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	139753.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	318.06	391.21	184.99	294.85	266.38	225.06	254.54	340.91	149.89
Merged-chr4-55665016-3	chr4	55664528	55665528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132553.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	14.3	14.75	1.85	24.96	12.6	12.86	10.56	4.42	4.37
Merged-chr9-45247807-3	chr9	45247305	45248305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18902.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	258.57	253.89	137.82	263.81	180.54	221.85	209.12	221.97	152.38
Merged-chr4-133241558-4	chr4	133241084	133242084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016693, intron 1 of 28)	intron (NM_016693, intron 1 of 28)	766.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	14.3	7.83	12.95	12.14	7.46	0.8	28.52	24.32	21.86
Merged-chr8-126587004-3	chr8	126586517	126587517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6419.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	60.07	61.75	68.45	70.17	84.9	80.38	83.44	65.0	52.46
Merged-chr2-36278955-3	chr2	36278482	36279482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44C|DNA|TcMar-Tigger	48556.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	38.9	30.87	14.8	31.04	27.99	20.9	32.74	28.3	21.86
Merged-chr15-9071775-1	chr15	9071275	9072275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	CpG	515.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	172.76	126.72	137.82	134.94	84.9	101.28	143.64	87.99	59.33
Merged-chr6-121227010-3	chr6	121226503	121227503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017379)	TTS (NM_017379)	16269.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	58.35	80.64	77.7	42.51	40.59	40.19	88.72	72.07	59.95
Merged-chr14-18238488-3	chr14	18237995	18238995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	CpG	611.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	704.77	525.29	246.04	627.49	529.95	357.69	459.44	508.05	254.81
Merged-chr6-86471939-1	chr6	86471439	86472439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8891.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	348.38	341.44	222.91	391.34	372.27	247.57	331.64	394.86	163.0
Merged-chr18-46612370-3	chr18	46611860	46612860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14656.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	109.83	87.55	51.8	162.61	172.61	126.19	92.94	107.0	49.34
Merged-chr15-88142187-1	chr15	88141687	88142687	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-172687.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	12.01	14.75	5.55	25.64	21.46	26.53	0.0	0.44	2.5
Merged-chr3-152714097-3	chr3	152713612	152714612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178016)	promoter-TSS (NM_178016)	12.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	46.91	67.74	29.6	63.42	60.65	46.62	62.31	65.88	29.98
Merged-chr11-51264650-3	chr11	51264150	51265150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358281)	promoter-TSS (NM_001358281)	-988.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	144.16	150.68	93.42	128.2	133.42	99.67	175.33	138.84	96.18
Merged-chr2-181837886-3	chr2	181837379	181838379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153594)	promoter-TSS (NM_153594)	25.0	NM_001291211	245867.0	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	40.04	34.1	12.95	45.21	28.46	53.05	40.14	44.66	27.48
Merged-chr19-43940182-3	chr19	43939677	43940677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028029)	promoter-TSS (NM_028029)	21.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	65.21	32.72	23.12	85.69	38.72	49.03	58.09	28.3	27.48
Merged-chr17-37538588-3	chr17	37538089	37539089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8632.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	65.79	79.25	58.27	41.83	28.46	23.31	55.98	50.41	34.35
Merged-chr8-72350211-3	chr8	72349715	72350715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31153.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	37.76	61.28	25.9	45.88	49.92	47.42	32.74	29.63	31.85
Merged-chr13-55020287-3	chr13	55019777	55020777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033245, intron 1 of 18)	intron (NM_001033245, intron 1 of 18)	542.0	NM_001206390	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	197.93	140.54	121.17	211.86	138.09	132.63	271.44	266.63	106.79
Merged-chr6-127236773-3	chr6	127236282	127237282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71185.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	36.04	31.79	24.97	22.94	23.79	16.08	32.74	31.84	17.49
Merged-chr17-50509557-3	chr17	50509065	50510065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	18.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	232.83	219.33	254.36	203.76	198.27	270.88	302.07	219.76	143.02
Merged-chr3-41083199-3	chr3	41082716	41083716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-170.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	83.52	93.54	80.47	83.66	91.9	86.01	102.45	67.65	78.07
Merged-chr8-14891469-3	chr8	14890978	14891978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	2942.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	260.28	240.99	196.09	279.33	215.06	240.33	253.48	293.6	181.11
Merged-chr6-127254159-3	chr6	127253657	127254657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53810.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	46.34	24.42	20.35	40.48	18.66	28.13	42.25	22.99	16.24
Merged-chr19-53142610-3	chr19	53142124	53143124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277100)	promoter-TSS (NM_001277100)	-132.0	NM_001277100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	47.48	56.68	56.42	72.87	65.78	101.28	66.54	65.88	53.08
Merged-chr16-37011707-3	chr16	37011197	37012197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159369)	promoter-TSS (NM_001159369)	-89.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	32.61	46.08	23.12	35.09	34.06	40.99	59.15	46.87	39.35
Merged-chr5-143817717-3	chr5	143817218	143818218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-54144.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	116.7	116.12	76.77	82.32	89.57	129.41	124.63	108.77	78.07
Merged-chr9-77754658-3	chr9	77754205	77755205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151778, exon 1 of 17)	non-coding (NR_151778, exon 1 of 17)	170.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	163.61	100.45	103.59	201.07	99.83	80.38	125.69	79.59	76.82
Merged-chr15-58261760-3	chr15	58261267	58262267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-46875.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	159.6	90.77	92.5	200.39	139.02	159.15	126.74	118.94	70.57
Merged-chr12-40446751-3	chr12	40446317	40447317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	764.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	101.25	149.75	122.09	107.95	129.22	126.19	122.52	129.11	104.92
Merged-chr14-31830777-3	chr14	31830292	31831292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024604)	promoter-TSS (NM_001024604)	-377.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	11.44	5.53	1.85	10.8	6.53	10.45	6.34	3.98	5.0
Merged-chr7-118491518-3	chr7	118490998	118491998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033380, exon 1 of 1)	5' UTR (NM_001033380, exon 1 of 1)	477.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	264.86	289.37	316.33	275.28	263.58	291.78	284.11	244.08	209.22
Merged-chr16-98082053-3	chr16	98081564	98082564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	375.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	26.31	24.88	16.65	43.86	41.05	42.6	50.7	49.52	16.24
Merged-chr12-25378285-2	chr12	25377799	25378799	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	249125.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	6.86	1.84	7.4	3.37	1.87	0.0	2.11	6.63	6.25
Merged-chr10-7663329-3	chr10	7662827	7663827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-44.0	NR_030698	320642.0	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	131.57	118.88	143.37	128.87	116.63	147.9	136.25	105.68	76.82
Merged-chr17-78362527-3	chr17	78362033	78363033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	55619.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	73.22	46.54	32.37	72.87	69.04	49.03	57.03	58.37	33.72
Merged-chr14-8224088-3	chr14	8223597	8224597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027782)	TTS (NM_027782)	7849.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	35.47	34.1	20.35	41.16	27.06	45.82	47.53	44.22	14.99
Merged-chr6-125256730-3	chr6	125256236	125257236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8789.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	72.65	63.13	58.27	88.39	87.24	89.22	64.43	94.18	50.59
Merged-chr2-59889901-3	chr2	59889415	59890415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-7309.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	15.45	14.28	8.32	19.57	28.92	34.56	25.35	22.99	19.98
Merged-chr14-40985840-3	chr14	40985337	40986337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-18941.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	7.44	7.83	23.12	9.45	3.73	9.65	4.22	4.42	7.49
Merged-chr13-85359355-3	chr13	85358862	85359862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69876.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	39.47	29.03	20.35	31.04	24.26	20.09	21.12	14.59	13.74
Merged-chr9-104408071-3	chr9	104407569	104408569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18044.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	133.86	109.21	100.82	105.26	99.37	82.79	136.25	136.63	57.46
Merged-chr11-32358601-3	chr11	32358110	32359110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	MIR|SINE|MIR	10799.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	19.45	25.34	21.27	4.72	4.2	3.22	2.11	3.98	7.49
Merged-chr11-114679795-3	chr11	114679304	114680304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	4336.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	298.04	239.15	180.37	316.44	277.57	228.28	272.5	363.9	153.63
Merged-chr7-64141516-3	chr7	64141060	64142060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12275.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	340.94	402.73	243.26	313.07	347.08	290.97	343.26	366.11	184.24
Merged-chr17-35000969-3	chr17	35000470	35001470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	63.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	217.95	188.92	164.64	238.85	187.54	161.56	232.36	232.14	111.17
Merged-chr11-84829118-3	chr11	84828617	84829617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	-61.0	NR_046281	74995.0	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	160.75	141.0	123.02	197.69	157.21	127.0	192.23	221.53	113.04
Merged-chr3-94588180-3	chr3	94587677	94588677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-5461.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	70.36	61.28	34.22	80.29	69.51	57.87	48.58	37.14	28.1
Merged-chr12-81781281-3	chr12	81780767	81781767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177395)	promoter-TSS (NM_177395)	-97.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	64.07	71.42	50.87	63.42	70.91	47.42	60.2	74.28	56.21
Merged-chrX-102113327-3	chrX	102112819	102113819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6146.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	33.18	8.75	12.02	22.27	16.33	18.49	25.35	25.2	8.12
Merged-chr17-35998296-3	chr17	35997799	35998799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	3795.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	41.76	40.55	43.47	42.51	31.26	52.25	45.42	37.58	30.6
Merged-chr13-5511986-3	chr13	5511499	5512499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	346093.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	18.31	31.33	24.97	20.92	19.13	25.72	31.69	30.95	18.11
Merged-chr12-105962828-3	chr12	105962338	105963338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47425.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.01	10.14	5.55	3.37	1.87	4.82	12.67	14.59	7.49
Merged-chr1-62721543-3	chr1	62721053	62722053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	18236.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	76.66	82.02	83.25	59.38	41.52	63.5	42.25	29.63	37.47
Merged-chr5-115535117-3	chr5	115534646	115535646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-24321.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	113.84	113.35	123.94	152.49	131.09	177.64	139.42	169.35	109.29
Merged-chr17-23771670-3	chr17	23771163	23772163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153791)	promoter-TSS (NM_153791)	-61.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	73.22	44.7	43.47	60.05	53.65	40.99	60.2	43.77	35.6
Merged-chr17-64721288-3	chr17	64720775	64721775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-45836.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	92.1	126.72	95.27	142.37	122.23	161.56	84.49	100.81	93.68
Merged-chr19-60226657-3	chr19	60226148	60227148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358271)	promoter-TSS (NM_001358271)	53.0	NR_152391	76539.0	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	122.42	123.03	86.02	100.53	111.03	98.06	105.62	70.3	71.2
Merged-chr12-52603884-3	chr12	52603378	52604378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-1556.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	368.97	463.55	215.51	321.84	376.94	239.53	385.51	486.38	193.6
Merged-chr7-48788514-3	chr7	48788026	48789026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	-477.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	68.65	64.97	63.82	64.77	61.11	77.97	74.99	79.59	57.46
Merged-chr16-50409569-3	chr16	50409065	50410065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	22824.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	45.19	26.26	9.25	64.1	37.32	24.92	32.74	42.45	12.49
Merged-chr9-118611346-3	chr9	118610838	118611838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4629.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	139.58	146.99	145.22	212.54	150.68	159.95	186.94	179.08	107.42
Merged-chr11-62458449-3	chr11	62457935	62458935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039536)	promoter-TSS (NM_001039536)	-25.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	244.84	271.86	144.29	222.66	258.45	193.71	253.48	286.97	136.15
Merged-chr4-13152353-2	chr4	13151853	13152853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	245516.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.15	3.23	1.85	10.8	5.6	3.22	7.39	4.42	6.25
Merged-chr17-48043719-3	chr17	48043237	48044237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-5444.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	10.3	4.61	7.4	14.17	1.87	7.23	6.34	7.96	2.5
Merged-chr4-9647184-1	chr4	9646684	9647684	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-3467.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	30.89	21.66	25.9	31.71	17.73	27.33	66.54	87.55	34.97
Merged-chr15-73645774-3	chr15	73645287	73646287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21043.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	112.69	117.04	108.22	112.68	110.1	112.53	113.01	76.94	66.2
Merged-chrX-13280563-2	chrX	13280026	13281026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010028)	promoter-TSS (NM_010028)	-496.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	228.82	229.47	162.79	225.36	217.86	237.92	193.28	221.08	125.53
Merged-chr7-102266753-3	chr7	102266257	102267257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1067.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	127.57	129.02	114.69	155.86	124.56	129.41	204.9	254.69	63.7
Merged-chr13-73433780-3	chr13	73433289	73434289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33594.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	48.05	32.25	22.2	49.93	24.72	24.92	44.36	30.95	12.49
Merged-chr4-148151996-3	chr4	148151495	148152495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015797)	promoter-TSS (NM_015797)	34.0	NM_001163706	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	298.61	278.77	249.74	277.31	280.84	230.69	271.44	245.84	130.53
Merged-chr2-3512934-3	chr2	3512451	3513451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	-114.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	312.91	335.45	221.99	282.71	324.69	244.35	253.48	314.82	148.64
Merged-chr2-114654796-3	chr2	114654296	114655296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 1 of 8)	CpG	168.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	104.11	121.19	106.37	127.52	111.03	98.06	121.46	105.24	63.7
Merged-chr17-7884957-3	chr17	7884475	7885475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	70.36	58.98	60.12	69.5	60.65	63.5	95.06	85.34	85.56
Merged-chr10-67598771-3	chr10	67598257	67599257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26798.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	251.13	217.49	108.22	242.22	228.59	200.14	149.98	254.69	101.8
Merged-chr2-113440846-3	chr2	113440332	113441332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285459)	promoter-TSS (NM_001285459)	-232.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	145.3	151.6	110.99	145.06	143.68	127.8	133.08	144.59	84.31
Merged-chr15-75929825-3	chr15	75929333	75930333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031201)	promoter-TSS (NM_031201)	-15.0	NM_001357005	22122.0	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	36.61	44.24	40.7	35.09	34.99	49.03	30.63	28.74	14.36
Merged-chr5-45497720-3	chr5	45497233	45498233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4359.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	22.88	16.13	21.27	29.69	19.59	34.56	23.24	20.34	19.98
Merged-chr2-118926532-3	chr2	118926055	118927055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028117)	promoter-TSS (NM_028117)	58.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	18.31	16.13	24.97	24.96	28.92	46.62	41.19	41.56	30.6
Merged-chr15-99074932-3	chr15	99074423	99075423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030159)	promoter-TSS (NM_030159)	-50.0	NM_001162506	78733.0	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	109.83	131.78	107.29	114.7	90.97	126.19	90.83	114.08	96.8
Merged-chr5-135568857-3	chr5	135568329	135569329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	4220.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	65.79	69.12	49.02	140.34	78.84	103.69	57.03	75.17	55.58
Merged-chr9-121371717-3	chr9	121371216	121372216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	(CTGGGG)n|Simple_repeat|Simple_repeat	4758.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	19.45	9.68	20.35	17.54	17.26	13.66	24.29	13.71	24.98
Merged-chr1-65112662-1	chr1	65112162	65113162	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9299.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	241.98	248.82	110.99	328.59	309.76	221.04	367.55	459.85	141.77
Merged-chr1-53876172-3	chr1	53875690	53876690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	26766.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	97.25	84.78	71.22	130.9	106.36	117.35	101.39	104.79	70.57
Merged-chr7-31150689-1	chr7	31150189	31151189	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	CpG	482.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	241.41	227.63	229.39	262.47	216.93	188.89	314.74	215.34	145.51
Merged-chr6-128799669-3	chr6	128799183	128800183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11042.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	129.86	156.67	84.17	143.71	101.7	69.93	142.59	161.39	105.55
Merged-chr19-14598357-3	chr19	14597866	14598866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302950)	promoter-TSS (NM_001302950)	-183.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	104.69	101.83	105.44	85.69	76.51	80.38	110.9	104.35	75.57
Merged-chr11-78177520-3	chr11	78177014	78178014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291235)	promoter-TSS (NM_001291235)	-635.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	96.11	60.36	40.7	103.23	56.91	23.31	89.78	95.07	44.97
Merged-chr14-121423644-3	chr14	121423143	121424143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44413.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	66.93	66.81	53.65	76.24	30.32	68.32	74.99	45.99	39.35
Merged-chr2-93457909-3	chr2	93457406	93458406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	3945.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	113.27	86.63	73.07	93.11	54.11	51.44	66.54	50.85	26.85
Merged-chr11-3649121-3	chr11	3648631	3649631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159288)	promoter-TSS (NM_001159288)	-317.0	NR_002321	544752.0	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	259.71	250.21	262.69	255.72	251.91	217.02	306.29	202.51	165.5
Merged-chr9-78451597-3	chr9	78451120	78452120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026658, intron 3 of 11)	RSINE1|SINE|B4	3410.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	66.93	68.66	37.0	58.03	65.31	66.71	65.48	95.95	67.45
Merged-chr2-151494181-3	chr2	151493663	151494663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291074)	promoter-TSS (NM_001291074)	-19.0	NM_001291074	386649.0	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	38.9	29.95	33.3	56.68	45.72	43.4	51.75	27.41	18.74
Merged-chr1-151598046-3	chr1	151597533	151598533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L3|LINE|CR1	26660.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	187.63	186.62	109.14	170.7	140.42	110.92	127.8	160.95	87.43
Merged-chr11-110426992-3	chr11	110426493	110427493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	27891.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	134.43	124.41	61.97	154.51	126.89	139.86	175.33	202.51	106.79
Merged-chr2-164862601-3	chr2	164862100	164863100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4892.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	165.9	101.83	123.94	196.34	95.63	118.96	132.02	126.02	113.66
Merged-chr2-101733003-3	chr2	101732503	101733503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 7 of 8)	MTEb|LTR|ERVL-MaLR	54583.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	64.64	44.24	40.7	35.76	22.86	36.17	53.87	34.05	18.11
Merged-chr13-100152829-3	chr13	100152337	100153337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 12 of 15)	intron (NM_001126182, intron 12 of 15)	27982.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	52.63	73.73	54.57	62.75	47.12	77.97	89.78	110.1	41.22
Merged-chr19-29485499-3	chr19	29484992	29485992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36495.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	164.75	156.21	95.27	254.37	220.19	174.42	264.05	283.87	128.03
Merged-chr7-4812824-3	chr7	4812313	4813313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-473.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	339.8	378.76	229.39	304.97	331.22	231.49	324.25	422.71	161.13
Merged-chr7-105650870-3	chr7	105650375	105651375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153392, intron 2 of 3)	intron (NR_153392, intron 2 of 3)	10430.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	14.87	8.75	8.32	6.75	10.26	8.04	12.67	10.61	0.0
Merged-chr4-49521160-3	chr4	49520688	49521688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289901)	promoter-TSS (NM_001289901)	12.0	NM_001289901	230162.0	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	56.63	82.94	40.7	59.38	94.7	80.38	81.33	81.36	55.58
Merged-chr7-143069231-3	chr7	143068745	143069745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115085)	promoter-TSS (NM_001115085)	-123.0	NM_020285	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	90.38	100.91	123.94	79.62	70.91	123.78	78.16	77.82	72.45
Merged-chr16-35776469-2	chr16	35776005	35777005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152314, intron 1 of 8)	MTC|LTR|ERVL-MaLR	6119.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	132.14	123.49	64.75	120.77	104.03	127.0	83.44	77.82	53.08
Merged-chr14-118691089-3	chr14	118690575	118691575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	-14144.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	28.6	44.7	21.27	20.24	18.19	30.54	46.47	49.52	49.96
Merged-chr3-95740716-3	chr3	95740213	95741213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356965, intron 17 of 17)	intron (NM_001356965, intron 17 of 17)	-1144.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	92.1	70.96	49.02	108.63	108.23	117.35	77.1	91.53	84.94
Merged-chr5-124623145-3	chr5	124622660	124623660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 14 of 18)	intron (NM_026486, intron 14 of 18)	-5892.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	50.34	60.36	69.37	53.3	52.72	42.6	62.31	61.46	34.35
Merged-chr3-108840609-3	chr3	108840090	108841090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-88.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	88.1	77.41	73.07	80.97	65.78	77.16	109.84	84.45	71.2
Merged-chr7-35710523-3	chr7	35710016	35711016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 12 of 18)	intron (NM_178704, intron 12 of 18)	43938.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	152.17	193.99	101.74	149.11	136.69	156.74	44.36	32.28	24.36
Merged-chr12-70999730-3	chr12	70999213	71000213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	16110.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	98.97	103.22	72.15	64.1	62.98	63.5	99.28	133.53	70.57
Merged-chr10-24670805-1	chr10	24670305	24671305	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308329, intron 6 of 24)	intron (NM_001308329, intron 6 of 24)	41354.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	3.43	5.53	3.7	12.14	11.66	12.06	3.17	2.65	3.75
Merged-chr2-113848851-3	chr2	113848328	113849328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181416)	promoter-TSS (NM_181416)	-167.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	252.28	274.17	261.76	209.84	183.34	201.75	332.7	380.26	157.38
Merged-chr11-105589490-3	chr11	105589031	105590031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181071)	promoter-TSS (NM_181071)	-455.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	263.14	214.26	127.64	286.75	204.33	176.83	248.2	197.65	85.56
Merged-chr15-12322051-3	chr15	12321582	12322582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025673, intron 1 of 3)	CpG	586.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	327.21	410.56	322.81	343.43	382.54	308.65	378.11	288.74	241.69
Merged-chr1-191201389-3	chr1	191200900	191201900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18067.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	193.93	123.49	52.72	215.23	154.88	114.94	124.63	137.07	38.1
Merged-chr10-91170737-3	chr10	91170230	91171230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283048)	promoter-TSS (NM_001283048)	-180.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	166.47	140.54	118.39	155.86	107.3	94.04	144.7	107.89	115.54
Merged-chr16-18687098-3	chr16	18686603	18687603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57165.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	15.45	7.37	3.7	31.04	21.93	27.33	6.34	3.98	5.0
Merged-chr4-136206280-3	chr4	136205796	136206796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355698)	promoter-TSS (NM_001355698)	-69.0	NM_001008232	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	9.15	3.69	0.0	4.05	3.73	8.04	3.17	3.1	0.0
Merged-chr15-80255998-3	chr15	80255475	80256475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009716, intron 1 of 2)	CpG	791.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	397.01	271.4	282.11	389.99	314.43	319.1	278.83	243.19	194.85
Merged-chr2-5417844-3	chr2	5417346	5418346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	38456.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	45.19	25.34	37.92	26.99	16.33	20.09	21.12	22.11	19.36
Merged-chr7-127968372-2	chr7	127967889	127968889	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139149, intron 1 of 14)	intron (NM_139149, intron 1 of 14)	910.0	NM_139149	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	89.81	50.23	39.77	76.92	37.32	49.03	41.19	52.62	39.35
Merged-chr4-11485908-3	chr4	11485411	11486411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347055)	promoter-TSS (NM_001347055)	-47.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	86.95	118.42	74.0	87.04	86.77	68.32	106.67	103.47	67.45
Merged-chr7-80425717-3	chr7	80425222	80426222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-20286.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	96.11	97.23	82.32	93.11	77.44	95.65	67.6	67.65	58.71
Merged-chr5-117891276-3	chr5	117890775	117891775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	MER47A|DNA|TcMar-Tigger	24436.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	132.72	115.66	81.4	149.79	89.57	174.42	135.19	108.33	93.68
Merged-chr17-88118095-3	chr17	88117586	88118586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7426.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	34.32	34.1	20.35	38.46	21.93	35.37	31.69	37.14	23.11
Merged-chr11-79339552-3	chr11	79339063	79340063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010897)	promoter-TSS (NM_010897)	-329.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	411.88	422.08	210.89	362.32	331.22	228.28	354.88	339.58	137.4
Merged-chr16-90916267-3	chr16	90915754	90916754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18595.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	41.19	24.88	7.4	55.33	34.99	24.11	30.63	18.13	22.48
Merged-chr8-110618620-3	chr8	110618155	110619155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146216)	promoter-TSS (NM_146216)	88.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	183.06	186.16	133.19	182.85	224.39	175.23	261.93	252.04	99.3
Merged-chr11-34778413-3	chr11	34777911	34778911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	5494.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	22.88	25.8	33.3	35.09	20.53	21.7	22.18	17.24	33.1
Merged-chr4-135946439-3	chr4	135945942	135946942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008254)	promoter-TSS (NM_008254)	-6.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	388.42	331.3	257.14	453.41	418.92	294.19	524.92	495.67	202.97
Merged-chr6-86585288-3	chr6	86584813	86585813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42861.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	304.9	278.31	198.87	266.51	235.12	166.38	229.19	293.6	139.27
Merged-chr16-32332191-3	chr16	32331674	32332674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177633)	promoter-TSS (NM_177633)	-78.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	44.62	39.17	91.57	41.83	41.99	62.7	61.26	67.65	44.34
Merged-chr9-82975618-4	chr9	82975080	82976080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-91.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	140.15	170.49	138.74	132.92	138.55	128.61	158.43	117.62	114.29
Merged-chr3-122498136-1	chr3	122497636	122498636	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355264, intron 1 of 9)	intron (NM_001355264, intron 1 of 9)	14567.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.43	1.38	1.85	3.37	2.8	3.22	2.11	1.77	0.0
Merged-chr6-67037446-3	chr6	67036952	67037952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-45.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	84.66	69.58	38.85	103.91	51.32	42.6	57.03	47.75	49.96
Merged-chr1-184558389-3	chr1	184557892	184558892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040472)	promoter-TSS (NR_040472)	-701.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	48.62	24.42	20.35	47.9	30.32	20.9	33.8	14.59	16.24
Merged-chr13-45912070-3	chr13	45911572	45912572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	52919.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	98.97	66.81	59.2	71.52	46.65	64.3	30.63	22.11	25.61
Merged-chr12-108179463-3	chr12	108178956	108179956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028262)	promoter-TSS (NM_028262)	-172.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	230.54	261.26	220.14	190.95	246.78	161.56	233.42	244.08	133.02
Merged-chr2-180257287-3	chr2	180256786	180257786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-93.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	121.28	118.88	111.92	101.88	108.7	127.0	111.96	135.3	76.82
Merged-chr5-144255975-3	chr5	144255361	144256361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018772, exon 2 of 3)	exon (NM_018772, exon 2 of 3)	636.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	328.36	330.84	375.53	360.97	291.57	345.63	410.86	370.54	249.81
Merged-chr10-19094506-3	chr10	19094005	19095005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47244.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	82.95	68.2	35.15	93.11	70.91	36.97	97.17	78.71	56.21
Merged-chr15-86225278-3	chr15	86224795	86225795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	10836.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	135.58	111.97	93.42	120.1	94.7	118.16	89.78	104.79	73.69
Merged-chr4-19709184-3	chr4	19708730	19709730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276292)	promoter-TSS (NM_001276292)	-226.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	159.03	110.13	106.37	165.31	150.22	149.5	158.43	103.47	80.56
Merged-chr5-24445230-3	chr5	24444715	24445715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023229)	promoter-TSS (NM_023229)	20.0	NM_023229	66587.0	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	135.0	111.51	120.24	153.84	122.69	140.66	142.59	139.72	89.31
Merged-chr8-35375574-3	chr8	35375085	35376085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177741)	promoter-TSS (NM_177741)	-156.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	62.93	47.46	43.47	80.29	81.17	67.52	36.97	32.28	18.11
Merged-chr12-112762273-3	chr12	112761784	112762784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	1629.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	117.84	122.57	98.05	136.97	118.49	90.02	153.15	133.53	67.45
Merged-chr2-94010774-3	chr2	94010240	94011240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026944)	promoter-TSS (NM_026944)	-10.0	NM_026944	69113.0	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	46.91	45.62	31.45	76.92	64.38	60.28	57.03	59.69	46.84
Merged-chr2-158500202-3	chr2	158499693	158500693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291138)	TTS (NM_001291138)	-2419.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	41.76	40.55	40.7	31.04	32.19	45.01	22.18	23.43	23.11
Merged-chr2-25054448-3	chr2	25053943	25054943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020276)	promoter-TSS (NM_020276)	64.0	NM_001177655	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	39.47	27.19	24.97	35.09	26.59	21.7	39.08	30.95	18.11
Merged-chr14-66223821-3	chr14	66223325	66224325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-10001.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	188.78	199.52	141.52	179.47	168.41	128.61	130.97	153.87	91.18
Merged-chr17-26242229-3	chr17	26241720	26242720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	2022.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	106.97	89.39	78.62	89.74	62.05	75.56	126.74	130.0	72.45
Merged-chr7-143095753-3	chr7	143095238	143096238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	13.16	14.75	18.5	13.49	5.13	9.65	16.9	15.92	17.49
Merged-chr19-46502223-3	chr19	46501727	46502727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053100, exon 1 of 6)	5' UTR (NM_053100, exon 1 of 6)	579.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	300.9	228.55	333.91	242.22	194.07	287.76	283.06	200.3	172.37
Merged-chr8-68183970-3	chr8	68183469	68184469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92559.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	38.9	30.87	7.4	43.18	31.26	21.7	43.3	36.7	18.11
Merged-chr10-37338393-3	chr10	37337915	37338915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-199489.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	211.09	211.96	115.62	189.6	158.61	182.46	139.42	202.07	126.78
Merged-chr12-76957867-3	chr12	76957366	76958366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4382.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	160.18	161.74	84.17	195.67	153.95	139.86	177.44	249.38	101.17
Merged-chr5-108268808-3	chr5	108268306	108269306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026106)	promoter-TSS (NM_026106)	-91.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	109.83	123.49	160.94	104.58	99.37	126.19	108.79	102.14	113.66
Merged-chr10-81402324-1	chr10	81401824	81402824	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7251.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	75.51	56.22	67.52	112.0	67.64	73.95	104.56	91.53	63.08
Merged-chr7-55986724-3	chr7	55986230	55987230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153578, intron 3 of 4)	intron (NM_153578, intron 3 of 4)	24199.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	46.91	53.91	28.67	19.57	15.39	20.09	19.01	12.82	9.99
Merged-chr9-110532364-3	chr9	110531856	110532856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081340)	promoter-TSS (NM_001081340)	-241.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	270.58	264.95	228.46	232.78	172.61	188.09	273.55	204.28	164.88
Merged-chr4-149793367-3	chr4	149792847	149793847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19080.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	64.64	46.08	49.95	66.8	60.18	53.05	129.91	118.06	68.7
Merged-chr2-167886678-3	chr2	167886195	167887195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45632.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	66.93	58.52	97.12	69.5	71.38	63.5	101.39	90.2	53.71
Merged-chr1-97662073-3	chr1	97661577	97662577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-59.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	160.75	139.62	145.22	126.85	127.36	147.09	139.42	114.08	94.3
Merged-chr16-36656120-3	chr16	36655547	36656547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	B3|SINE|B2	10030.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	90.38	99.99	66.6	95.14	64.84	53.85	87.66	76.49	40.59
Merged-chr10-8873790-1	chr10	8873290	8874290	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	12280.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	176.19	174.64	101.74	198.37	154.88	141.47	133.08	145.47	88.68
Merged-chr5-36563973-3	chr5	36563483	36564483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	18414.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	231.68	199.98	172.04	228.73	145.08	136.64	159.48	188.36	129.28
Merged-chr2-137608758-1	chr2	137608258	137609258	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-492238.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.43	4.61	7.4	5.4	5.13	4.02	6.34	2.65	2.5
Merged-chr6-108829094-1	chr6	108828594	108829594	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138677, exon 1 of 12)	exon (NM_138677, exon 1 of 12)	453.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	241.98	270.48	174.82	221.98	213.19	180.85	293.62	272.37	151.14
Merged-chr8-121652998-3	chr8	121652504	121653504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-14599	-1071.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	35.47	23.5	39.77	39.81	23.33	65.11	50.7	17.69	21.23
Merged-chr2-131160145-3	chr2	131159664	131160664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026091)	promoter-TSS (NM_026091)	-83.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	212.8	162.66	97.12	231.43	215.99	134.23	164.76	160.06	66.2
Merged-chr15-78607753-3	chr15	78607264	78608264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 5 of 12)	intron (NM_028195, intron 5 of 12)	10717.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	54.92	48.38	86.95	68.15	31.26	73.14	68.65	48.64	46.22
Merged-chr13-97302106-1	chr13	97301606	97302606	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61001.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	5.72	4.15	0.0	8.77	4.2	3.22	5.28	2.21	0.0
Merged-chr19-37434735-3	chr19	37434210	37435210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008245)	promoter-TSS (NM_008245)	-131.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	102.4	76.49	80.47	126.85	80.24	135.04	98.23	66.33	72.45
Merged-chr11-83733275-3	chr11	83732773	83733773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-13667.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	42.9	49.76	15.72	72.87	43.39	30.54	50.7	54.39	34.35
Merged-chr15-98933998-3	chr15	98933507	98934507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011654, intron 1 of 3)	CpG	383.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	104.69	66.35	62.9	102.56	47.12	90.02	80.27	80.47	76.19
Merged-chr8-126572487-3	chr8	126571974	126572974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20962.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	98.39	56.22	16.65	98.51	62.98	48.23	32.74	30.51	28.73
Merged-chr3-95042607-3	chr3	95042116	95043116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008951)	promoter-TSS (NM_008951)	-2.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	153.88	200.9	110.07	136.97	169.81	143.07	198.56	205.17	98.05
Merged-chr16-13818700-3	chr16	13818217	13819217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010946)	promoter-TSS (NM_010946)	-534.0	NM_010946	18203.0	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	238.55	223.94	184.07	143.71	158.61	165.58	207.01	268.4	117.41
Merged-chr6-108876186-3	chr6	108875675	108876675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47534.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	9.72	5.53	1.85	9.45	0.93	1.61	6.34	1.33	5.0
Merged-chr11-11886554-3	chr11	11886056	11887056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	3852.0	NM_016672	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	8.58	6.91	0.0	13.49	7.0	9.65	13.73	6.19	9.99
Merged-chr1-182905895-1	chr1	182905395	182906395	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48893.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.86	2.76	5.55	7.42	3.73	3.22	1.06	0.88	2.5
Merged-chr1-43098599-3	chr1	43098110	43099110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133818)	promoter-TSS (NM_133818)	18.0	NM_001013025	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	479.95	525.75	328.36	415.63	415.66	323.93	415.08	454.11	249.19
Merged-chr6-58916748-3	chr6	58916233	58917233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361966, intron 24 of 25)	intron (NM_001361966, intron 24 of 25)	-9607.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	34.9	34.1	22.2	41.83	40.12	36.17	40.14	36.7	29.98
Merged-chr7-99147105-3	chr7	99146601	99147601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5957.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	144.16	120.26	83.25	122.12	105.9	95.65	153.15	152.99	123.03
Merged-chrX-160502529-1	chrX	160502029	160503029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001358968, exon 1 of 15)	5' UTR (NM_001358968, exon 1 of 15)	367.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	120.13	118.88	75.85	109.3	149.28	105.3	137.3	139.72	75.57
Merged-chr7-30308683-3	chr7	30308181	30309181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198027)	promoter-TSS (NM_198027)	-72.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	72.65	64.51	65.67	64.1	74.64	89.22	57.03	46.87	45.59
Merged-chr13-113614125-3	chr13	113613632	113614632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4432.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	117.84	152.06	86.02	162.61	147.88	106.1	129.91	151.66	86.81
Merged-chr3-34019952-3	chr3	34019443	34020443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113188)	promoter-TSS (NM_001113188)	-136.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	231.68	188.92	192.39	199.72	166.08	155.13	175.33	170.68	134.27
Merged-chr2-128817968-3	chr2	128817500	128818500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028248)	promoter-TSS (NM_028248)	-303.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	233.4	192.15	184.99	210.51	174.94	204.97	183.78	161.39	113.04
Merged-chr10-98880296-3	chr10	98879807	98880807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34335.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	445.06	388.44	221.99	437.22	378.34	290.17	397.13	527.95	217.34
Merged-chr9-7332031-3	chr9	7331551	7332551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12346.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	9.72	27.65	15.72	30.36	32.19	22.51	21.12	15.03	28.1
Merged-chr11-79207933-3	chr11	79207440	79208440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35084.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	49.77	26.26	31.45	39.81	22.39	18.49	26.4	27.41	21.86
Merged-chr12-17715874-3	chr12	17715352	17716352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	25043.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	69.22	59.9	45.32	53.3	30.32	97.26	83.44	75.17	66.82
Merged-chr7-135651941-3	chr7	135651448	135652448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316681)	promoter-TSS (NM_001316681)	49.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	161.89	180.63	138.74	120.77	163.74	127.8	149.98	153.87	105.55
Merged-chr8-35520107-1	chr8	35519607	35520607	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24574.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.57	1.38	5.55	1.35	3.73	3.22	14.79	11.5	16.24
Merged-chr15-82987945-3	chr15	82987438	82988438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28642.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	7.44	2.76	0.0	6.07	5.13	8.04	2.11	0.44	1.25
Merged-chr9-108716352-3	chr9	108715838	108716838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 2 of 10)	intron (NM_008924, intron 2 of 10)	24195.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	20.59	11.98	16.65	17.54	9.8	19.29	26.4	7.96	17.49
Merged-chr16-33836800-3	chr16	33836307	33837307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7142.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	16.02	31.79	20.35	30.36	45.72	35.37	31.69	27.41	40.59
Merged-chr15-6304006-3	chr15	6303511	6304511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	4222.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	14.3	14.75	2.77	14.84	17.26	12.86	23.24	14.59	12.49
Merged-chr10-128923103-3	chr10	128922604	128923604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015740, intron 1 of 3)	CpG	420.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	121.85	150.22	108.22	153.16	153.95	131.02	186.94	180.4	104.3
Merged-chr3-122924291-3	chr3	122923779	122924779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046036)	promoter-TSS (NR_046036)	-118.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	29.75	20.74	32.37	37.78	23.33	24.92	45.42	40.68	25.61
Merged-chr2-167632125-3	chr2	167631640	167632640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311131)	promoter-TSS (NM_001311131)	-135.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	350.1	267.25	238.64	255.72	232.32	224.26	291.51	294.04	179.86
Merged-chr2-165043182-3	chr2	165042701	165043701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8422.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	19.45	9.68	10.17	6.07	9.33	3.22	27.46	12.38	9.37
Merged-chr11-120905664-3	chr11	120905163	120906163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	27209.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	7.44	10.14	12.02	14.84	3.27	3.22	5.28	4.42	4.37
Merged-chr3-145576260-3	chr3	145575784	145576784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346521)	promoter-TSS (NM_001346521)	68.0	NM_001346521	229937.0	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	12.01	11.52	12.02	16.87	12.6	8.04	23.24	11.05	6.87
Merged-chr3-83055404-3	chr3	83054899	83055899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016784)	promoter-TSS (NM_016784)	-139.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	77.23	48.84	74.0	68.15	60.18	51.44	65.48	72.07	28.73
Merged-chr12-84761888-1	chr12	84761388	84762388	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	11224.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	394.14	417.93	213.66	351.53	333.55	234.71	335.87	462.95	177.37
Merged-chr16-92861818-3	chr16	92861312	92862312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-35738.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	33.18	18.89	11.1	54.65	21.93	21.7	31.69	23.88	14.99
Merged-chr9-109875467-3	chr9	109874949	109875949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007658)	promoter-TSS (NM_007658)	-130.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	61.78	54.83	66.6	68.82	60.65	53.05	64.43	37.58	41.84
Merged-chr2-119618594-3	chr2	119618088	119619088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042653)	promoter-TSS (NM_001042653)	-83.0	NM_001042653	70645.0	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	53.77	54.37	9.25	65.45	46.18	30.54	65.48	49.08	53.08
Merged-chr9-119402015-3	chr9	119401508	119402508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-170.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	57.78	47.46	55.5	56.68	54.58	69.93	83.44	79.15	47.46
Merged-chr10-120208771-3	chr10	120208258	120209258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-68.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	344.95	301.81	160.02	255.72	254.25	183.26	316.86	368.77	161.13
Merged-chr2-130450312-3	chr2	130449832	130450832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163688)	promoter-TSS (NM_001163688)	54.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	101.25	79.25	66.6	130.22	64.84	77.16	86.61	67.21	36.22
Merged-chr4-137861767-1	chr4	137861267	137862267	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-470.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	28.03	24.88	17.57	35.09	33.12	56.27	19.01	11.5	8.12
Merged-chr3-65658993-3	chr3	65658505	65659505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106200)	promoter-TSS (NR_106200)	-283.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	247.7	180.17	96.2	332.64	310.23	186.48	129.91	101.7	64.33
Merged-chr17-6655924-3	chr17	6655420	6656420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199948)	promoter-TSS (NM_001199948)	19.0	NM_001199948	100040531.0	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	84.09	154.82	86.02	99.18	115.69	110.12	98.23	118.5	88.06
Merged-chr12-85599318-3	chr12	85598820	85599820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-96.0	NM_030887	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	317.49	217.95	167.42	335.33	183.34	182.46	296.79	214.89	118.04
Merged-chr1-191062964-3	chr1	191062474	191063474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163421)	promoter-TSS (NM_001163421)	-42.0	NM_026895	68972.0	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	48.05	18.43	53.65	51.28	30.79	53.05	51.75	35.37	39.35
Merged-chr10-99181712-3	chr10	99181220	99182220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73585.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	351.81	312.87	202.56	391.34	300.43	185.68	327.42	415.64	151.14
Merged-chr6-121130234-3	chr6	121129734	121130734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	788.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.43	4.15	5.55	6.75	0.47	1.61	2.11	2.21	5.0
Merged-chr8-84270486-3	chr8	84269987	84270987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294281)	promoter-TSS (NM_001294281)	-85.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	198.5	211.96	110.07	190.27	160.48	130.21	205.96	229.93	106.79
Merged-chr1-39469207-3	chr1	39468703	39469703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	9544.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.86	6.91	12.95	8.77	11.2	8.84	19.01	13.27	4.37
Merged-chr6-50060126-3	chr6	50059627	50060627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-50114.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	21.17	13.82	1.85	20.24	23.79	16.08	19.01	21.22	13.12
Merged-chr1-165667100-3	chr1	165666602	165667602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-32561.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	233.4	202.28	104.52	213.89	160.01	145.49	195.39	210.03	129.9
Merged-chr9-44552386-2	chr9	44551887	44552887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-25966.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	1.72	8.75	6.47	15.52	16.79	21.7	32.74	24.32	16.24
Merged-chr6-54699598-1	chr6	54699098	54700098	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17974.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	3.43	2.76	3.7	0.67	1.4	0.0	20.07	18.57	5.0
Merged-chr11-89002376-3	chr11	89001936	89002936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	3033.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	131.0	135.47	108.22	156.53	148.82	136.64	160.54	222.41	116.79
Merged-chr16-58511609-3	chr16	58511026	58512026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	B1_Mus2|SINE|Alu	11900.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	226.53	228.09	109.14	234.13	195.47	145.49	193.28	253.36	131.15
Merged-chr6-47748497-1	chr6	47747997	47748997	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4266.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	1.85	0.0	0.0	0.0	7.39	7.96	21.23
Merged-chr15-99651701-3	chr15	99651205	99652205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-49.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	16.59	16.59	24.05	14.84	10.26	6.43	22.18	22.99	11.24
Merged-chr1-92180878-2	chr1	92180377	92181377	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-536.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	246.56	297.21	184.99	228.73	292.97	237.12	262.99	273.7	116.79
Merged-chr2-150921849-3	chr2	150921342	150922342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	intron (NM_027014, intron 4 of 6)	12248.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	106.4	161.74	107.29	112.68	146.48	121.37	119.35	198.09	77.44
Merged-chr9-77936101-3	chr9	77935609	77936609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	18744.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	20.02	19.35	12.02	24.96	18.19	15.27	26.4	10.17	16.86
Merged-chrX-104413765-3	chrX	104413189	104414189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009592, exon 1 of 16)	exon (NM_009592, exon 1 of 16)	157.0	NM_009592	11306.0	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	48.05	60.82	73.07	61.4	54.58	46.62	59.15	55.27	26.85
Merged-chr10-19691986-3	chr10	19691476	19692476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20611.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	290.03	261.73	197.94	283.38	233.72	159.15	265.1	276.35	120.53
Merged-chr1-167336585-3	chr1	167336093	167337093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13398.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	74.37	94.92	78.62	93.11	73.71	82.79	76.05	92.86	88.06
Merged-chr9-103305155-3	chr9	103304664	103305664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176979)	promoter-TSS (NM_176979)	-163.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	78.37	52.07	75.85	47.9	39.19	68.32	82.38	45.54	75.57
Merged-chr10-86886617-3	chr10	86886138	86887138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	107633.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	245.98	253.43	166.49	256.39	195.47	171.21	229.19	339.14	144.27
Merged-chr5-138207429-2	chr5	138206934	138207934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13120.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	171.62	190.3	123.94	203.09	198.73	136.64	0.0	1.77	1.25
Merged-chr11-59208718-2	chr11	59208210	59209210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024210, intron 1 of 6)	CpG	349.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	265.43	255.27	259.91	240.2	201.53	247.57	224.97	222.85	207.34
Merged-chr13-41552104-3	chr13	41551627	41552627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54089.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	236.26	272.78	135.04	226.03	193.6	176.03	217.57	247.61	141.14
Merged-chr7-90016674-3	chr7	90016172	90017172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12487.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	90.38	112.43	64.75	139.67	97.03	100.47	90.83	102.14	46.84
Merged-chr12-98268664-3	chr12	98268176	98269176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	41.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	153.88	193.07	100.82	155.86	136.22	124.59	190.11	269.72	125.53
Merged-chr13-64398269-3	chr13	64397787	64398787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27767.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	21.74	20.27	13.87	14.84	23.79	20.9	10.56	7.52	7.49
Merged-chr15-10470665-3	chr15	10470150	10471150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030046)	promoter-TSS (NM_030046)	-134.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	108.12	54.83	79.55	87.04	35.45	65.91	105.62	27.86	29.35
Merged-chr15-80030698-3	chr15	80030223	80031223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-15915.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	125.28	91.24	127.64	137.64	83.51	129.41	134.14	159.62	104.3
Merged-chr1-136135218-3	chr1	136134699	136135699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	3809.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	132.14	130.86	103.59	134.27	75.11	110.92	215.46	156.97	94.3
Merged-chr10-59236647-3	chr10	59236121	59237121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14699.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	228.25	193.99	104.52	210.51	166.08	188.89	223.91	286.52	108.67
Merged-chr9-78050587-3	chr9	78050084	78051084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1374.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	35.47	27.19	11.1	32.39	10.26	12.86	22.18	20.78	8.12
Merged-chr14-73525025-3	chr14	73524544	73525544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172527, intron 3 of 4)	CpG	205.0	NM_001360484	214254.0	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	192.78	181.55	144.29	157.88	143.68	155.13	181.66	126.46	108.04
Merged-chr14-106681433-3	chr14	106680934	106681934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194914.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	16.59	23.96	12.02	15.52	20.53	13.66	22.18	13.27	16.24
Merged-chr1-60657237-3	chr1	60656743	60657743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89145.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	50.34	46.54	49.02	64.1	35.92	41.8	61.26	64.56	48.09
Merged-chr13-64161784-3	chr13	64161286	64162286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019986)	promoter-TSS (NM_019986)	-80.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	32.61	27.19	22.2	29.01	27.52	29.74	52.81	39.35	35.6
Merged-chr4-126046944-3	chr4	126046457	126047457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025544)	promoter-TSS (NM_025544)	29.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	95.53	70.5	83.25	71.52	73.71	72.34	89.78	70.3	44.34
Merged-chr6-137687875-2	chr6	137687363	137688363	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38578.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	1.14	1.84	5.55	18.22	4.2	8.84	8.45	6.63	5.0
Merged-chr2-32236558-3	chr2	32236052	32237052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145145)	promoter-TSS (NM_145145)	-131.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	50.91	58.98	61.97	67.47	57.85	88.42	74.99	93.74	54.33
Merged-chr4-117182658-3	chr4	117182145	117183145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134471)	promoter-TSS (NM_134471)	-21.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	100.11	91.7	53.65	109.3	87.24	74.75	92.94	79.59	47.46
Merged-chr10-14103313-3	chr10	14102792	14103792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	136913.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	30.32	20.27	12.02	26.99	9.8	10.45	30.63	40.68	13.74
Merged-chr8-34904293-3	chr8	34903800	34904800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	MER90a|LTR|ERV1	61390.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	16.59	17.51	14.8	16.87	12.6	14.47	7.39	8.4	6.25
Merged-chr16-50756893-3	chr16	50756398	50757398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24125.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	12.59	8.75	9.25	8.77	12.13	4.82	10.56	8.84	8.74
Merged-chr12-69446563-3	chr12	69446099	69447099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28951.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	172.19	113.81	100.82	244.25	122.69	163.97	172.16	135.75	74.32
Merged-chr4-130913287-3	chr4	130912790	130913790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-44.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	341.52	237.76	241.41	326.56	226.72	258.82	359.1	285.64	153.01
Merged-chr16-55807758-1	chr16	55807258	55808258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14380.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.43	4.61	3.7	2.7	3.27	10.45	5.28	6.63	7.49
Merged-chr8-90938624-3	chr8	90938120	90939120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	6371.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	30.32	24.42	14.8	25.64	28.92	38.58	19.01	25.65	13.74
Merged-chr13-21753923-3	chr13	21753417	21754417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178183)	promoter-TSS (NM_178183)	-5.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	105.83	112.89	126.72	127.52	102.17	119.76	109.84	139.72	104.92
Merged-chr10-81285860-3	chr10	81285368	81286368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282096)	promoter-TSS (NM_001282096)	-87.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	22.31	12.9	10.17	18.89	17.73	19.29	22.18	13.71	7.49
Merged-chr2-52897235-3	chr2	52896766	52897766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	39398.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	56.63	75.11	84.17	80.29	66.24	104.49	92.94	90.64	63.08
Merged-chr13-43777538-3	chr13	43777021	43778021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7591.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	196.79	119.8	83.25	172.05	118.03	143.88	107.73	120.27	66.2
Merged-chr11-64079514-3	chr11	64078973	64079973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033780)	promoter-TSS (NR_033780)	-1.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	114.41	136.85	73.07	73.54	104.96	70.73	134.14	119.39	71.82
Merged-chr7-122300757-1	chr7	122300257	122301257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	11632.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	101.83	74.19	27.75	19.57	12.13	8.04	7.39	3.54	11.24
Merged-chr4-147922354-3	chr4	147921852	147922852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 10 of 18)	MER58B|DNA|hAT-Charlie	14424.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	21.17	24.88	29.6	25.64	16.79	24.92	47.53	34.93	28.73
Merged-chr10-4111891-1	chr10	4111391	4112391	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	101229.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	2.29	4.61	4.62	4.05	2.8	8.04	7.39	2.21	1.25
Merged-chr15-25634324-3	chr15	25633819	25634819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	11769.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	103.54	66.81	58.27	25.64	16.33	16.08	57.03	25.65	18.74
Merged-chr7-104465613-3	chr7	104465104	104466104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009099)	promoter-TSS (NM_009099)	-411.0	NM_009099	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	110.41	111.51	106.37	141.69	100.3	105.3	151.03	144.15	102.42
Merged-chr2-84826975-3	chr2	84826473	84827473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013899)	promoter-TSS (NM_013899)	-48.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	18.31	17.05	3.7	24.29	28.46	12.06	26.4	15.48	7.49
Merged-chr2-14207013-3	chr2	14206512	14207512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-22402.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	71.51	60.36	40.7	53.3	57.85	32.15	42.25	37.58	51.84
Merged-chr4-144892378-3	chr4	144891885	144892885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-442.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	105.83	139.62	107.29	136.97	182.4	159.95	148.92	168.02	107.42
Merged-chr15-3270997-2	chr15	3270484	3271484	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	7.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	70.36	96.76	64.75	63.42	54.11	74.75	109.84	97.28	68.07
Merged-chr11-110697214-3	chr11	110696722	110697722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217882.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	16.59	14.75	9.25	24.96	18.66	22.51	20.07	12.38	7.49
Merged-chr9-37613676-3	chr9	37613163	37614163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324545)	promoter-TSS (NM_001324545)	57.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	33.18	32.72	14.8	42.51	41.05	24.92	26.4	23.43	17.49
Merged-chr18-53312146-3	chr18	53311641	53312641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	66479.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	47.48	30.87	31.45	33.06	24.72	26.53	55.98	33.6	20.61
Merged-chr1-180357909-3	chr1	180357413	180358413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-27364.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	62.93	67.74	47.17	54.65	32.19	39.39	41.19	30.95	49.34
Merged-chr1-165614977-3	chr1	165614468	165615468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	19573.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	33.18	43.31	30.52	49.25	34.99	60.28	36.97	59.69	33.1
Merged-chr7-5125951-3	chr7	5125437	5126437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009028)	promoter-TSS (NM_009028)	13.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	112.12	123.49	109.14	138.32	157.68	74.75	157.37	141.05	63.08
Merged-chr5-134932292-3	chr5	134931800	134932800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024479)	promoter-TSS (NM_024479)	-73.0	NM_001359536	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	33.75	24.42	25.9	49.93	27.99	37.78	34.85	15.03	17.49
Merged-chr10-53596837-3	chr10	53596342	53597342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025541)	promoter-TSS (NM_025541)	-119.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	110.41	91.7	113.77	99.18	115.69	85.2	94.0	116.73	74.94
Merged-chr6-119388810-3	chr6	119388331	119389331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355692)	promoter-TSS (NM_001355692)	-97.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	219.67	198.6	140.59	205.79	158.15	122.18	189.06	183.06	98.68
Merged-chr16-96145318-3	chr16	96144816	96145816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207301)	promoter-TSS (NM_207301)	-103.0	NM_207301	71446.0	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	28.03	22.58	24.97	24.96	16.33	16.08	19.01	24.32	13.74
Merged-chr8-88118694-3	chr8	88118198	88119198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029074)	promoter-TSS (NM_029074)	-61.0	NM_029074	382030.0	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	74.37	68.66	62.9	33.74	31.72	32.15	69.71	68.98	37.47
Merged-chr4-156109884-3	chr4	156109376	156110376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-122.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	54.92	73.26	76.77	45.21	48.05	40.19	97.17	111.43	60.58
Merged-chr5-99415245-3	chr5	99414745	99415745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-162318.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	165.32	148.83	73.07	145.74	108.7	122.18	113.01	130.88	71.2
Merged-chr10-66848962-3	chr10	66848457	66849457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71427.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	42.9	32.72	16.65	41.16	47.58	40.99	58.09	53.5	25.61
Merged-chr17-57275228-3	chr17	57274754	57275754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3846.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	149.31	103.68	126.72	144.39	97.97	115.75	107.73	126.46	70.57
Merged-chr6-129436247-3	chr6	129435750	129436750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175526, intron 2 of 5)	intron (NM_175526, intron 2 of 5)	15750.0	NM_001347475	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	37.18	34.1	24.97	63.42	37.79	40.99	42.25	43.77	19.98
Merged-chr7-129528498-3	chr7	129528014	129529014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63349.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	16.02	17.51	15.72	17.54	9.33	17.68	24.29	10.61	16.24
Merged-chr15-58749288-3	chr15	58748793	58749793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74134.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	29.75	20.74	12.95	37.78	21.46	9.65	27.46	21.22	13.74
Merged-chr5-140419327-3	chr5	140418816	140419816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	11.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	177.34	153.44	135.04	150.46	121.29	165.58	218.63	152.11	136.77
Merged-chr14-21757759-3	chr14	21757264	21758264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	(T)n|Simple_repeat|Simple_repeat	6212.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	97.82	107.82	118.39	103.91	58.78	57.07	165.82	136.19	84.94
Merged-chr11-87461937-3	chr11	87461436	87462436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	34345.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	76.66	60.82	42.55	87.04	55.05	41.8	67.6	57.92	29.98
Merged-chr6-66896799-1	chr6	66896299	66897299	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177558)	promoter-TSS (NM_001177558)	-92.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	62.35	51.15	47.17	80.97	60.65	36.97	72.88	42.89	29.98
Merged-chr1-178337829-3	chr1	178337345	178338345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-30.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	350.67	355.73	270.09	322.51	339.62	278.11	308.41	337.82	238.57
Merged-chr11-120930144-1	chr11	120929644	120930644	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 1 of 18)	RLTR33|LTR|ERVK	2728.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	9.72	5.53	12.95	6.75	4.67	6.43	43.3	30.07	9.37
Merged-chr7-30420422-3	chr7	30419917	30420917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011827)	promoter-TSS (NM_011827)	-563.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	336.94	317.94	221.99	292.15	245.85	248.37	346.43	356.39	189.86
Merged-chr13-48962773-3	chr13	48962280	48963280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	5048.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	141.3	143.76	96.2	129.55	96.1	87.61	140.47	139.72	76.82
Merged-chr2-117342874-3	chr2	117342364	117343364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	13.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	322.64	274.17	191.47	315.77	257.51	133.43	361.22	408.56	124.91
Merged-chr5-120516668-3	chr5	120516168	120517168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5476.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	553.18	395.35	265.46	637.61	374.61	328.75	483.73	487.27	236.7
Merged-chr5-96160663-3	chr5	96160152	96161152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144910, intron 1 of 11)	intron (NM_144910, intron 1 of 11)	895.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	111.55	136.85	85.1	106.61	145.08	115.75	96.11	87.55	74.32
Merged-chr17-26532867-3	chr17	26532406	26533406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24434.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	449.06	370.01	248.81	389.99	341.95	266.86	237.64	332.51	185.48
Merged-chr14-76287939-3	chr14	76287436	76288436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36474.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	29.17	36.4	17.57	35.76	21.93	14.47	22.18	22.99	21.86
Merged-chr9-50948265-3	chr9	50947764	50948764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	60809.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	25.74	31.33	28.67	31.71	31.26	21.7	40.14	30.07	32.48
Merged-chr5-43869369-3	chr5	43868850	43869850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	541.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	199.65	205.97	178.52	316.44	219.26	249.17	261.93	305.1	114.29
Merged-chr15-55113611-3	chr15	55113146	55114146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-64.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	118.99	129.94	105.44	80.29	58.31	61.09	79.21	87.55	38.1
Merged-chr10-94967410-3	chr10	94966920	94967920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22842.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	26.89	7.83	11.1	43.86	17.26	8.84	14.79	10.61	8.74
Merged-chr15-31601781-3	chr15	31601273	31602273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	73.0	NM_007637	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	149.31	149.29	108.22	178.13	151.15	144.68	224.97	163.16	103.05
Merged-chr19-23758338-3	chr19	23757856	23758856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-520.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	28.03	25.34	24.05	25.64	20.53	38.58	32.74	25.65	14.99
Merged-chr2-170129425-3	chr2	170128864	170129864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	1856.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	145.3	175.56	99.89	116.05	92.84	103.69	136.25	161.39	86.81
Merged-chr10-75832371-3	chr10	75831890	75832890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010361, intron 4 of 4)	intron (NM_010361, intron 4 of 4)	2491.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	7.44	5.07	2.77	11.47	2.33	12.06	2.11	5.31	12.49
Merged-chr11-69323893-3	chr11	69323407	69324407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172560)	promoter-TSS (NM_172560)	-34.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	270.01	227.17	128.57	258.42	194.53	152.72	240.81	273.26	123.03
Merged-chr2-92459756-3	chr2	92459258	92460258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	36.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	188.21	202.75	192.39	192.97	233.72	199.34	204.9	221.08	119.91
Merged-chr2-23069215-3	chr2	23068707	23069707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001102438, exon 1 of 13)	5' UTR (NM_001102438, exon 1 of 13)	135.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	163.61	171.41	198.87	160.58	144.15	165.58	149.98	171.12	136.15
Merged-chr7-88270713-3	chr7	88270218	88271218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7367.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	148.73	166.8	66.6	189.6	125.02	118.96	136.25	165.37	101.17
Merged-chr1-82724971-3	chr1	82724506	82725506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310699, exon 1 of 7)	5' UTR (NM_001310699, exon 1 of 7)	116.0	NM_001310695	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	236.26	266.79	155.39	223.33	230.92	158.35	207.01	180.4	83.69
Merged-chr15-8340805-3	chr15	8340316	8341316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	103647.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	45.19	88.01	43.47	43.86	68.58	55.46	63.37	61.9	33.1
Merged-chr14-51089545-3	chr14	51089063	51090063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1514.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	106.4	100.91	93.42	87.71	67.18	63.5	101.39	88.88	54.96
Merged-chr9-106199248-3	chr9	106198682	106199682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	51.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	74.37	65.89	63.82	81.64	62.05	82.79	85.55	71.19	69.95
Merged-chr4-139741919-2	chr4	139741419	139742419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 8 of 8)	MTD|LTR|ERVL-MaLR	88381.0	NM_031873	83770.0	Mm.190612	NM_031873	ENSMUSG00000028738	Tas1r2	Gpr71|T1r2|TR2	taste receptor, type 1, member 2	protein-coding	47.48	58.06	51.8	1.35	0.93	3.22	88.72	60.58	53.08
Merged-chr4-139235734-1	chr4	139235234	139236234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	41623.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	70.93	72.8	43.47	72.87	37.79	56.27	68.65	72.52	36.85
Merged-chr4-141273442-3	chr4	141272932	141273932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5007.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	97.82	93.08	85.1	148.44	95.63	131.82	109.84	130.44	79.32
Merged-chr13-66907111-1	chr13	66906611	66907611	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177750, intron 1 of 2)	intron (NM_001177750, intron 1 of 2)	1696.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	6.86	4.15	9.25	1.35	4.67	5.63	32.74	42.01	18.74
Merged-chr11-70230565-3	chr11	70230040	70231040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007528)	promoter-TSS (NM_007528)	-742.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	14.87	6.91	14.8	16.87	9.33	6.43	14.79	7.96	6.87
Merged-chr15-101257020-3	chr15	101256504	101257504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9842.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	68.07	40.09	24.05	85.69	52.25	55.46	69.71	64.56	46.84
Merged-chr14-21890654-3	chr14	21890142	21891142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-41732.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	13.73	13.82	3.7	32.39	27.06	17.68	14.79	12.38	5.62
Merged-chr4-134245630-3	chr4	134245135	134246135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024215)	promoter-TSS (NM_024215)	-44.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	55.49	45.62	37.92	61.4	37.32	42.6	81.33	54.39	16.24
Merged-chr13-8677394-1	chr13	8676894	8677894	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	193650.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	1.72	2.76	3.7	15.52	16.33	14.47	8.45	1.33	9.99
Merged-chrX-159144866-3	chrX	159144377	159145377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110905.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	13.73	17.51	9.25	18.22	13.53	26.53	10.56	5.31	12.49
Merged-chr9-48422500-3	chr9	48421993	48422993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31851.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	50.91	62.21	39.77	35.09	36.39	39.39	106.67	123.36	68.07
Merged-chr3-146653800-3	chr3	146653298	146654298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2481.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	36.61	19.81	38.85	56.0	35.92	33.76	49.64	29.63	19.98
Merged-chr11-70764445-3	chr11	70763919	70764919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177565)	promoter-TSS (NM_177565)	-28.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	67.5	57.6	55.5	92.44	65.31	55.46	74.99	75.61	28.73
Merged-chr10-127622267-2	chr10	127621752	127622752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1104.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	118.99	91.24	75.85	182.17	87.7	127.8	148.92	141.05	103.67
Merged-chr18-53256367-3	chr18	53255860	53256860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	L1MC5|LINE|L1	10698.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	278.02	320.71	160.02	393.36	403.53	239.53	245.04	307.75	109.92
Merged-chr6-17637070-4	chr6	17636609	17637609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007604)	promoter-TSS (NM_007604)	99.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	217.95	147.45	159.09	244.92	113.83	127.0	226.02	133.53	138.02
Merged-chr11-101119978-3	chr11	101119489	101120489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134024)	promoter-TSS (NM_134024)	-142.0	NM_134024	103733.0	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	57.21	43.31	48.1	54.65	33.59	57.87	78.16	62.35	46.22
Merged-chr16-57121616-5	chr16	57121089	57122089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138599)	promoter-TSS (NM_138599)	-125.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	152.17	127.64	135.97	130.22	107.3	123.78	151.03	117.62	98.05
Merged-chr2-16335431-3	chr2	16334913	16335913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20891.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	27.46	16.13	14.8	18.89	26.59	16.88	17.96	15.92	18.74
Merged-chr1-182528124-3	chr1	182527608	182528608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10498.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	21.17	11.98	11.1	20.92	7.93	15.27	10.56	8.84	1.25
Merged-chr11-63045999-3	chr11	63045498	63046498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15661.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	316.92	319.78	206.26	316.44	330.29	222.65	321.08	386.01	137.4
Merged-chr11-97127237-3	chr11	97126744	97127744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	106.97	72.8	110.07	108.63	70.91	62.7	110.9	102.14	54.33
Merged-chr2-118026013-3	chr2	118025511	118026511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	(TG)n|Simple_repeat|Simple_repeat	85191.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	21.74	10.14	9.25	15.52	9.8	16.08	6.34	10.17	0.0
Merged-chr2-93458866-3	chr2	93458362	93459362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2989.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	237.4	171.41	110.99	165.98	115.69	72.34	111.96	107.89	54.33
Merged-chr6-31177048-3	chr6	31176542	31177542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41432.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	217.95	220.72	94.35	236.83	189.4	165.58	177.44	255.13	118.66
Merged-chr6-128381427-3	chr6	128380944	128381944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027697, intron 2 of 2)	intron (NM_027697, intron 2 of 2)	5934.0	NM_027697	71149.0	Mm.483176	NM_027697	ENSMUSG00000079304	Tex52	4933413G19Rik	testis expressed 52	protein-coding	16.02	5.53	10.17	16.19	7.0	1.61	6.34	3.98	4.37
Merged-chrX-7574363-3	chrX	7573818	7574818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290574)	promoter-TSS (NM_001290574)	-37.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	134.43	86.17	103.59	133.59	76.97	77.97	105.62	62.35	57.46
Merged-chrX-56455949-3	chrX	56455443	56456443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	CpG-15696	1104.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	34.32	32.25	25.9	43.18	29.39	40.99	46.47	36.26	28.1
Merged-chr1-43471443-3	chr1	43470937	43471937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	25686.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	10.87	7.83	1.85	8.77	9.8	4.82	20.07	7.96	10.62
Merged-chr15-66742748-3	chr15	66742250	66743250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	71980.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	45.76	64.97	52.72	75.57	49.92	65.91	45.42	40.68	47.46
Merged-chr4-133968068-3	chr4	133967575	133968575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-84.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	184.2	183.39	172.04	217.93	209.0	198.54	179.55	169.35	138.65
Merged-chr6-135161499-3	chr6	135160981	135161981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	MIR3|SINE|MIR	6734.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	39.47	41.01	22.2	37.11	25.66	41.8	54.92	51.29	28.73
Merged-chr13-8995377-4	chr13	8994898	8995898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027000, intron 1 of 16)	intron (NM_027000, intron 1 of 16)	614.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	379.84	377.38	232.16	267.86	276.17	240.33	320.02	421.39	150.51
Merged-chr2-83644448-3	chr2	83643947	83644947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026934)	promoter-TSS (NM_026934)	-131.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	124.71	112.89	85.1	119.43	112.43	109.32	127.8	99.49	76.19
Merged-chr12-69516703-3	chr12	69516209	69517209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41159.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	21.74	17.05	23.12	27.66	20.53	22.51	32.74	15.92	29.98
Merged-chr16-91933387-3	chr16	91932895	91933895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1765.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	54.92	70.96	43.47	74.22	52.25	65.11	69.71	78.71	53.08
Merged-chr10-88712593-3	chr10	88712086	88713086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18515.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	88.1	87.55	47.17	117.4	71.84	93.24	97.17	84.45	59.33
Merged-chr10-68204678-2	chr10	68204199	68205199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	74027.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	74.94	84.78	65.67	100.53	78.84	107.71	9.51	8.4	7.49
Merged-chr14-25457800-3	chr14	25457295	25458295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1390.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	63.5	19.35	8.32	42.51	27.99	29.74	29.57	15.48	6.25
Merged-chrX-143483067-3	chrX	143482568	143483568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-35523.0	NM_001195048	18481.0	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 (RAC1) activated kinase 3	protein-coding	443.91	1262.09	32.37	357.6	1239.98	20.9	682.3	944.03	24.98
Merged-chr8-109687505-3	chr8	109687025	109688025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	MLTR31A_MM|LTR|ERVK	5769.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	68.07	69.58	42.55	64.1	56.45	61.09	77.1	71.19	62.45
Merged-chr7-66369247-3	chr7	66368754	66369754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	L1MC5|LINE|L1	12470.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	17.73	9.68	14.8	14.84	8.86	18.49	15.84	9.29	19.36
Merged-chr4-133672584-3	chr4	133672089	133673089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145956)	promoter-TSS (NM_001145956)	58.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	245.41	224.86	272.86	224.01	166.54	258.02	193.28	219.31	152.38
Merged-chr3-135597160-3	chr3	135596664	135597664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 17 of 24)	intron (NM_008689, intron 17 of 24)	94383.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	9.15	9.68	5.55	12.82	10.26	12.06	12.67	9.73	2.5
Merged-chr5-115516266-3	chr5	115515768	115516768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	9592.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	311.77	235.0	177.59	311.72	261.71	235.51	234.47	302.0	131.78
Merged-chr6-90477321-2	chr6	90476823	90477823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001355668, exon 3 of 3)	3' UTR (NM_001355668, exon 3 of 3)	14747.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	12.01	5.53	3.7	6.75	7.0	3.22	2.11	0.44	5.62
Merged-chr1-74434720-3	chr1	74434225	74435225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310662)	TTS (NM_001310662)	25341.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	133.29	111.51	55.5	140.34	85.37	81.99	88.72	93.3	58.71
Merged-chrX-167231334-3	chrX	167230824	167231824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22106.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	68.65	86.17	52.72	80.97	57.85	65.91	78.16	95.07	58.08
Merged-chr11-44546422-3	chr11	44545930	44546930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	27053.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	111.55	138.7	137.82	102.56	106.83	116.55	114.07	158.74	98.05
Merged-chr9-58271366-3	chr9	58270859	58271859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18195.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	106.97	72.8	50.87	89.06	57.85	48.23	140.47	120.71	64.33
Merged-chr9-16215533-3	chr9	16215038	16216038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	162693.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	63.5	92.16	53.65	68.82	80.71	72.34	76.05	104.35	52.46
Merged-chr5-107987026-6	chr5	107986485	107987485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026062)	promoter-TSS (NM_026062)	92.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	100.11	88.47	103.59	117.4	70.91	111.73	122.52	73.4	67.45
Merged-chr1-52232445-3	chr1	52231966	52232966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081081, intron 1 of 17)	CpG	766.0	NM_001081081	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	190.49	187.54	172.97	231.43	193.6	182.46	198.56	190.57	139.89
Merged-chr4-12008268-3	chr4	12007782	12008782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41708.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	42.9	32.25	20.35	51.28	44.32	28.94	36.97	28.3	16.86
Merged-chr6-31081436-3	chr6	31080922	31081922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18329.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	198.5	148.83	110.07	253.69	196.87	133.43	174.27	232.14	89.31
Merged-chrUn_JH584304-328-1	chrUn_JH584304	-172	828	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59361.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	42.25	29.63	0.0
Merged-chr1-121327878-3	chr1	121327389	121328389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271531)	promoter-TSS (NM_001271531)	135.0	NM_001357251	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	120.13	143.76	172.04	156.53	180.07	130.21	158.43	166.25	113.66
Merged-chr17-50182650-3	chr17	50182141	50183141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	7856.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	10.3	6.91	11.1	20.24	14.93	14.47	16.9	11.5	10.62
Merged-chr2-164943071-3	chr2	164942583	164943583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5136.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	32.04	17.51	11.1	32.39	12.6	12.06	42.25	28.3	16.24
Merged-chr14-63410680-3	chr14	63410192	63411192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6495.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	152.17	191.69	122.09	141.69	193.6	162.37	158.43	192.34	78.07
Merged-chr17-67448243-3	chr17	67447749	67448749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93758.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	21.17	26.26	11.1	18.89	13.53	14.47	13.73	17.24	11.24
Merged-chr14-25401726-3	chr14	25401234	25402234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57451.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	36.04	35.02	32.37	48.58	30.32	63.5	53.87	27.41	33.72
Merged-chr10-20505672-3	chr10	20505170	20506170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	42658.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	77.8	53.45	28.67	64.1	62.51	40.19	28.52	26.53	22.48
Merged-chr2-92055545-3	chr2	92055035	92056035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31365.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	41.19	25.34	16.65	28.34	37.79	10.45	20.07	23.43	16.24
Merged-chr9-72791868-3	chr9	72791385	72792385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15389.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	10.87	5.07	1.85	6.07	4.67	5.63	8.45	10.17	2.5
Merged-chr5-3342401-3	chr5	3341897	3342897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1496.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	147.59	150.68	54.57	177.45	202.93	125.39	151.03	134.42	59.33
Merged-chr3-100692481-3	chr3	100691974	100692974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7001.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	52.63	79.72	34.22	57.35	77.44	72.34	115.12	106.56	58.71
Merged-chr17-49428362-3	chr17	49427858	49428858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028464)	promoter-TSS (NM_028464)	-6.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	95.53	149.75	138.74	95.14	121.76	131.02	125.69	133.09	80.56
Merged-chr1-13513994-3	chr1	13513499	13514499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	75911.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	11.44	10.14	10.17	10.12	11.2	9.65	17.96	11.94	5.62
Merged-chr4-123951849-3	chr4	123951346	123952346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34413.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	85.81	73.26	84.17	138.32	103.56	121.37	99.28	67.21	62.45
Merged-chr11-98783499-3	chr11	98783029	98784029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8152.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	243.12	157.59	121.17	217.93	138.55	143.88	172.16	216.22	123.03
Merged-chr8-36247196-3	chr8	36246686	36247686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	2330.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	165.9	125.79	57.35	118.75	89.1	96.45	98.23	102.58	35.6
Merged-chr14-24490655-3	chr14	24490151	24491151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207635)	promoter-TSS (NM_207635)	-27.0	NM_207635	20088.0	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	29.17	23.96	11.1	22.27	35.92	45.82	31.69	20.34	18.74
Merged-chr11-98795113-3	chr11	98794599	98795599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361932)	promoter-TSS (NM_001361932)	-417.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	169.33	152.98	172.04	172.73	125.02	156.74	236.59	154.32	139.89
Merged-chr11-116657996-3	chr11	116657506	116658506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163318, intron 2 of 4)	intron (NM_001163318, intron 2 of 4)	898.0	NM_001163318	100038570.0	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744	photoreceptor disc component	protein-coding	81.8	53.45	82.32	77.59	50.85	41.8	53.87	34.49	19.36
Merged-chr2-160070576-3	chr2	160070081	160071081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53928.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	74.94	102.29	50.87	96.48	86.77	50.64	58.09	61.02	31.85
Merged-chr2-128806778-3	chr2	128806290	128807290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11513.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	115.55	101.37	73.07	132.24	87.7	123.78	90.83	112.31	84.31
Merged-chr17-65717709-3	chr17	65717227	65718227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 2 of 6)	intron (NM_133685, intron 2 of 6)	55025.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	133.29	159.89	102.67	132.92	85.84	121.37	149.98	166.25	93.68
Merged-chr10-80692385-3	chr10	80691911	80692911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	ID_B1|SINE|B4	9409.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	177.34	155.75	70.3	189.6	106.83	90.02	157.37	176.87	84.31
Merged-chr3-34069142-3	chr3	34068626	34069626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001113188, exon 17 of 17)	3' UTR (NM_001113188, exon 17 of 17)	12228.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	13.73	23.96	24.97	20.92	24.72	38.58	20.07	22.55	13.12
Merged-chr6-32511109-3	chr6	32510606	32511606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040277)	promoter-TSS (NR_040277)	-35.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	84.09	105.52	91.57	120.1	112.43	90.02	120.41	130.44	72.45
Merged-chr12-51968060-3	chr12	51967565	51968565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	3256.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	73.22	76.49	39.77	70.17	35.45	57.07	87.66	86.66	48.09
Merged-chr10-24133371-3	chr10	24132872	24133872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15917.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	13.73	10.6	13.87	15.52	7.0	11.25	5.28	6.19	19.98
Merged-chr17-88112464-3	chr17	88111937	88112937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-13075.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	97.82	58.52	15.72	105.93	73.71	56.27	97.17	68.98	39.97
Merged-chr5-137684852-3	chr5	137684372	137685372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303266)	promoter-TSS (NM_001303266)	-119.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	20.59	12.44	12.02	14.17	10.73	28.94	15.84	23.88	17.49
Merged-chr6-29264546-3	chr6	29264050	29265050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7938.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	68.65	27.65	12.95	58.7	31.72	18.49	63.37	32.28	16.24
Merged-chr6-87672284-3	chr6	87671793	87672793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170489)	promoter-TSS (NM_001170489)	-125.0	NM_001170489	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	76.08	42.85	58.27	73.54	50.38	60.28	51.75	46.43	31.85
Merged-chr10-127603901-3	chr10	127603396	127604396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17252.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	279.73	240.53	231.24	315.77	196.4	314.28	330.59	417.85	177.99
Merged-chr2-4559649-3	chr2	4559167	4560167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177844)	promoter-TSS (NM_001177844)	-87.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	91.53	112.89	90.65	105.93	116.63	126.19	170.05	176.87	88.68
Merged-chr17-43077779-3	chr17	43077265	43078265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	61210.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	217.38	166.8	81.4	203.76	162.81	124.59	67.6	58.37	45.59
Merged-chr19-47148567-3	chr19	47148052	47149052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	122.99	61.28	20.35	105.26	79.31	45.01	144.7	149.89	45.59
Merged-chr8-124863101-3	chr8	124862581	124863581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025615)	promoter-TSS (NM_025615)	48.0	NM_010322	14712.0	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	265.43	288.45	203.49	304.3	380.67	263.64	255.6	229.48	158.63
Merged-chr2-27768006-3	chr2	27767496	27768496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	57413.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	132.14	103.68	85.1	106.61	63.91	80.38	68.65	60.13	57.46
Merged-chr15-25632368-3	chr15	25631889	25632889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	9839.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	161.32	159.89	111.92	91.76	84.9	74.75	121.46	104.35	62.45
Merged-chr2-158076927-3	chr2	158076425	158077425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291136, exon 6 of 6)	3' UTR (NM_001291136, exon 6 of 6)	14872.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	92.67	67.27	61.05	78.94	46.18	61.09	82.38	68.54	57.46
Merged-chr7-45062510-4	chr7	45062019	45063019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022999)	promoter-TSS (NM_022999)	90.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	118.99	94.46	121.17	65.45	84.9	101.28	104.56	130.0	91.18
Merged-chr1-54250695-3	chr1	54250188	54251188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030025)	promoter-TSS (NM_030025)	5.0	NM_030025	78016.0	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	4.58	10.6	2.77	11.47	14.93	19.29	5.28	7.07	1.25
Merged-chr15-95799799-3	chr15	95799282	95800282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8939.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	93.82	118.42	90.65	114.7	103.56	104.49	97.17	127.34	80.56
Merged-chr17-34264181-3	chr17	34263683	34264683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 1 of 5)	intron (NM_207105, intron 1 of 5)	956.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	176.76	145.61	140.59	93.79	48.98	32.15	109.84	119.39	86.18
Merged-chr6-121230099-3	chr6	121229595	121230595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-15811.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	10.3	11.52	10.17	9.45	8.4	20.9	14.79	13.27	14.99
Merged-chr6-122309889-3	chr6	122309381	122310381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1161.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	200.79	254.35	193.32	181.5	214.13	226.67	233.42	327.2	142.39
Merged-chr6-40594989-3	chr6	40594490	40595490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9185.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	13.16	15.67	7.4	19.57	5.6	10.45	6.34	9.73	6.25
Merged-chr7-100582926-3	chr7	100582443	100583443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003559, intron 1 of 7)	CpG	187.0	NM_198831	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	152.17	101.83	71.22	150.46	123.16	73.14	144.7	124.69	33.72
Merged-chr1-166379140-3	chr1	166378629	166379629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-38.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	224.82	230.85	176.67	219.96	204.8	159.15	226.02	200.3	93.68
Merged-chr9-77961551-3	chr9	77961099	77962099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	44234.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	66.93	61.75	52.72	65.45	68.58	90.02	60.2	56.16	51.84
Merged-chr6-89338866-3	chr6	89338353	89339353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	23760.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	22.31	20.74	16.65	20.24	12.13	17.68	25.35	15.03	7.49
Merged-chr14-17414721-1	chr14	17414221	17415221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246239.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	59.49	85.25	38.85	79.62	97.03	65.91	60.2	73.4	72.45
Merged-chr12-80132769-3	chr12	80132282	80133282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033514)	promoter-TSS (NR_033514)	62.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	285.45	248.82	201.64	301.6	221.13	215.42	347.48	253.36	150.51
Merged-chr14-118706324-3	chr14	118705831	118706831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033336)	promoter-TSS (NM_001033336)	-112.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	60.64	50.23	56.42	76.24	69.04	65.11	72.88	52.62	45.59
Merged-chr5-113945377-3	chr5	113944874	113945874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 14 of 14)	intron (NM_198109, intron 14 of 14)	-36668.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	49.77	51.61	51.8	63.42	68.11	50.64	49.64	39.35	40.59
Merged-chr17-12992452-3	chr17	12991965	12992965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	74.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	331.79	275.09	322.81	327.24	266.84	276.5	330.59	214.89	188.61
Merged-chr5-23978745-1	chr5	23978245	23979245	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	51567.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	8.01	5.53	3.7	26.99	17.26	10.45	7.39	4.42	9.99
Merged-chr15-59647674-3	chr15	59647165	59648165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-989.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	220.24	226.71	204.41	209.16	214.59	202.55	228.14	252.48	176.12
Merged-chr3-89801634-3	chr3	89801115	89802115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28006.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	125.85	152.52	66.6	117.4	132.49	132.63	116.18	153.43	79.32
Merged-chr16-95955903-3	chr16	95955394	95956394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26817.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	44.05	46.08	39.77	53.3	28.92	36.97	55.98	46.43	26.23
Merged-chr6-49073845-3	chr6	49073350	49074350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029353)	promoter-TSS (NM_029353)	55.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	183.63	155.28	107.29	151.81	101.23	114.14	155.26	127.79	85.56
Merged-chr8-72184003-3	chr8	72183495	72184495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5673.0	NM_197944	209488.0	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	22.88	17.05	24.05	21.59	13.06	28.94	14.79	12.38	11.24
Merged-chr8-106145523-3	chr8	106145002	106146002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-4852.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	22.31	20.74	25.9	16.19	14.93	24.11	10.56	11.94	15.61
Merged-chr18-34506194-5	chr18	34505650	34506650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	673.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	201.36	244.68	199.79	178.8	199.2	266.05	233.42	271.93	186.73
Merged-chr15-73067606-3	chr15	73067112	73068112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6408.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	117.84	128.56	91.57	80.97	90.5	77.97	110.9	166.7	77.44
Merged-chr1-39478704-3	chr1	39478196	39479196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357522)	promoter-TSS (NM_001357522)	51.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	57.21	35.94	61.97	62.75	40.12	43.4	73.93	53.94	23.73
Merged-chr2-103566272-3	chr2	103565793	103566793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-17.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	14.87	11.06	16.65	18.89	14.0	12.06	16.9	5.75	15.61
Merged-chr7-16405762-1	chr7	16405262	16406262	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	4566.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	86.38	103.68	95.27	74.89	84.9	181.66	101.39	92.86	93.05
Merged-chr4-129032864-3	chr4	129032372	129033372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25399.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	571.48	552.02	351.48	507.39	364.34	310.26	389.73	555.8	297.9
Merged-chr8-4238752-3	chr8	4238268	4239268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	28.0	NM_001164172	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	118.42	112.43	128.57	84.34	82.11	120.57	151.03	99.05	84.31
Merged-chr19-40659707-3	chr19	40659234	40660234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-36.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	167.61	195.83	119.32	170.7	193.6	136.64	139.42	228.6	88.06
Merged-chr5-64812729-3	chr5	64812231	64813231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	9208.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	164.18	171.41	161.87	155.19	132.02	153.52	122.52	140.17	74.32
Merged-chr3-51276763-3	chr3	51276248	51277248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-13.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	367.26	297.67	407.9	321.17	269.18	311.87	306.29	265.74	231.08
Merged-chr2-165955014-3	chr2	165954510	165955510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37627.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	212.8	208.74	184.99	265.16	194.53	211.4	221.8	321.9	131.15
Merged-chr19-16781049-3	chr19	16780543	16781543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-110.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	85.24	96.3	69.37	78.94	92.37	65.11	111.96	88.43	61.2
Merged-chr14-36864251-3	chr14	36863735	36864735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55300.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	20.02	21.2	9.25	25.64	29.39	27.33	23.24	14.15	5.0
Merged-chr6-16965841-3	chr6	16965347	16966347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67406.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	20.02	14.28	5.55	18.22	6.53	5.63	16.9	10.61	16.24
Merged-chr6-93122880-1	chr6	93122380	93123380	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182298.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.86	4.15	0.0	9.45	13.06	12.86	3.17	1.77	9.99
Merged-chr7-25788762-3	chr7	25788265	25789265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-32.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	61.78	56.68	61.05	64.77	57.38	79.58	113.01	84.9	51.21
Merged-chr17-37045598-1	chr17	37045098	37046098	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019439)	promoter-TSS (NM_019439)	-368.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	116.7	114.74	52.72	63.42	35.45	53.85	76.05	62.35	16.24
Merged-chr8-11465443-3	chr8	11464939	11465939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	B2_Mm2|SINE|B2	-12490.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	255.14	206.89	158.17	280.01	238.85	225.06	273.55	240.1	154.88
Merged-chr18-80934046-3	chr18	80933559	80934559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201569)	promoter-TSS (NM_001201569)	-1.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	211.66	211.5	101.74	216.58	169.81	115.75	192.23	126.46	85.56
Merged-chr3-146521231-6	chr3	146520786	146521786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027332, exon 1 of 5)	exon (NM_027332, exon 1 of 5)	137.0	NM_027332	70285.0	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	227.11	217.03	193.32	223.33	225.79	215.42	248.2	236.12	129.28
Merged-chr3-65319813-3	chr3	65319323	65320323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-17138.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	41.19	53.91	30.52	34.41	34.99	28.13	39.08	68.54	38.1
Merged-chr6-115015653-3	chr6	115015142	115016142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026894, intron 5 of 7)	intron (NM_026894, intron 5 of 7)	22232.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	7.44	9.68	3.7	17.54	10.26	6.43	7.39	4.86	5.0
Merged-chr17-56997226-3	chr17	56996729	56997729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025538)	promoter-TSS (NM_025538)	-110.0	NM_025538	66400.0	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	42.9	27.65	10.17	38.46	21.46	31.35	41.19	31.84	10.62
Merged-chr2-131233987-3	chr2	131233492	131234492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206385)	promoter-TSS (NM_001206385)	-71.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	98.97	87.55	94.35	114.7	87.7	80.38	76.05	114.52	61.2
Merged-chr12-75853714-3	chr12	75853216	75854216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	35398.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	133.29	160.35	97.12	130.9	125.49	102.08	152.09	187.04	98.05
Merged-chr19-37172948-3	chr19	37172436	37173436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045329)	promoter-TSS (NR_045329)	-907.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	48.62	40.55	26.82	45.21	33.12	30.54	60.2	66.77	53.08
Merged-chr3-27650317-3	chr3	27649814	27650814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	60138.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	46.34	31.79	33.3	44.53	37.32	28.94	61.26	30.95	26.85
Merged-chr2-22589759-3	chr2	22589262	22590262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32565.0	NM_008078	14417.0	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	3.43	0.92	0.0	0.0	2.8	3.22	1.06	0.0	1.25
Merged-chr7-45570338-3	chr7	45569849	45570849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243052)	promoter-TSS (NM_001243052)	196.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	65.79	53.45	81.4	66.8	63.45	54.66	87.66	61.9	39.35
Merged-chr14-120762967-3	chr14	120762481	120763481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-148213.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	42.9	57.6	49.95	95.81	121.76	82.79	65.48	96.83	16.86
Merged-chr17-73950277-3	chr17	73949791	73950791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-95.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	203.08	177.86	142.44	210.51	159.08	124.59	212.29	276.35	158.63
Merged-chr12-16828673-3	chr12	16828181	16829181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17716.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	4.0	6.45	3.7	12.14	8.4	8.04	5.28	2.21	7.49
Merged-chr16-44119922-3	chr16	44119422	44120422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	19337.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	256.85	269.1	113.77	289.45	263.11	198.54	232.36	256.01	108.67
Merged-chrX-48256831-3	chrX	48256332	48257332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028276)	promoter-TSS (NM_028276)	-102.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	105.26	115.2	58.27	111.33	127.36	87.61	130.97	137.51	78.07
Merged-chr12-34297200-3	chr12	34296697	34297697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 16 of 27)	intron (NM_001271386, intron 16 of 27)	231692.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	12.01	10.14	22.2	22.94	15.86	21.7	16.9	17.24	14.99
Merged-chr17-27555729-3	chr17	27555212	27556212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-862.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	190.49	98.61	48.1	188.25	137.62	95.65	119.35	79.15	39.97
Merged-chr1-65107815-3	chr1	65107314	65108314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285881, exon 8 of 8)	3' UTR (NM_001285881, exon 8 of 8)	-4451.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	54.92	57.6	61.05	72.87	81.17	74.75	99.28	80.92	49.34
Merged-chr17-43570643-3	chr17	43570141	43571141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	2190.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	116.7	150.22	135.04	168.68	111.5	142.27	134.14	134.42	106.79
Merged-chr13-56335030-3	chr13	56334555	56335555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27845.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	81.8	122.57	94.35	127.52	141.82	166.38	89.78	85.34	85.56
Merged-chr14-77547069-3	chr14	77546553	77547553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-40185.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	44.05	36.4	16.65	39.13	27.99	45.01	31.69	36.26	29.98
Merged-chr5-52669657-3	chr5	52669143	52670143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172490)	promoter-TSS (NM_172490)	58.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	52.06	31.33	44.4	35.09	31.72	40.19	49.64	40.68	28.73
Merged-chr10-81649053-3	chr10	81648580	81649580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142963)	promoter-TSS (NM_001142963)	11.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	65.21	61.28	26.82	75.57	56.45	29.74	65.48	57.92	28.1
Merged-chr7-80846110-3	chr7	80845624	80846624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15984.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	144.73	96.76	90.65	131.57	123.16	156.74	157.37	180.4	98.68
Merged-chr1-95314076-3	chr1	95313568	95314568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026321, exon 1 of 3)	exon (NM_026321, exon 1 of 3)	440.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	454.21	467.7	404.2	433.84	449.71	351.26	377.06	396.62	241.07
Merged-chr4-132620157-1	chr4	132619657	132620657	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18889.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	12.01	10.14	7.4	7.42	11.66	15.27	16.9	23.43	10.62
Merged-chr6-43449593-3	chr6	43449098	43450098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	MTD|LTR|ERVL-MaLR	7169.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	51.48	46.08	40.7	23.62	32.19	33.76	25.35	31.39	22.48
Merged-chr16-21411908-3	chr16	21411421	21412421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11197.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	45.76	60.36	49.95	39.13	34.99	44.21	51.75	71.63	47.46
Merged-chr10-117909353-3	chr10	117908852	117909852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16107.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	151.02	94.46	52.72	122.8	81.64	64.3	72.88	61.9	38.1
Merged-chr1-134094450-3	chr1	134093953	134094953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15298.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	376.98	301.81	224.76	320.49	212.26	241.94	260.88	369.65	197.35
Merged-chr17-29489179-3	chr17	29488683	29489683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1862.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	582.92	542.8	245.11	513.46	496.83	286.15	399.24	522.64	182.99
Merged-chr10-18235148-3	chr10	18234666	18235666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144820)	promoter-TSS (NM_144820)	-185.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	88.1	129.02	105.44	106.61	125.02	112.53	136.25	129.55	73.07
Merged-chr18-82505159-3	chr18	82504643	82505643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 2 of 3)	intron (NM_001025245, intron 2 of 3)	30020.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	21.17	30.41	14.8	18.89	13.53	36.97	12.67	17.69	19.98
Merged-chr1-178342250-3	chr1	178341756	178342756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	85.24	99.53	70.3	85.69	72.78	55.46	90.83	130.88	46.84
Merged-chr12-112644753-3	chr12	112644269	112645269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161737)	promoter-TSS (NM_001161737)	-59.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	50.91	50.69	66.6	97.16	63.45	72.34	79.21	65.0	46.84
Merged-chr8-78624217-3	chr8	78623723	78624723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	114895.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	26.31	24.42	12.95	24.29	19.59	17.68	16.9	26.09	8.74
Merged-chr17-7169968-3	chr17	7169471	7170471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011299)	promoter-TSS (NM_011299)	-144.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	23.45	24.42	25.9	53.98	49.92	47.42	46.47	53.94	22.48
Merged-chr4-132768203-3	chr4	132767706	132768706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-154.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	93.24	72.34	73.07	85.69	62.05	56.27	65.48	68.54	48.09
Merged-chr7-139233907-3	chr7	139233390	139234390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-14592.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	20.02	20.74	27.75	16.87	21.46	13.66	4.22	2.65	4.37
Merged-chr18-77796873-3	chr18	77796375	77797375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-485.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	195.64	203.21	202.56	178.8	114.29	195.32	232.36	260.44	146.76
Merged-chr6-125449868-3	chr6	125449347	125450347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44913.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	22.31	17.97	12.95	31.04	15.39	12.86	32.74	37.58	12.49
Merged-chr8-91070061-3	chr8	91069569	91070569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	12.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	190.49	264.03	169.27	159.23	242.12	204.97	154.2	184.83	177.37
Merged-chr5-24100536-3	chr5	24100051	24101051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026448)	promoter-TSS (NM_026448)	-39.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	94.96	82.02	37.0	109.98	82.11	51.44	91.89	54.39	44.97
Merged-chrX-134308079-3	chrX	134307556	134308556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145924)	promoter-TSS (NM_145924)	-28.0	NM_145924	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	67.5	71.42	24.97	58.03	46.18	53.85	87.66	80.47	32.48
Merged-chr11-100704333-3	chr11	100703808	100704808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030150)	promoter-TSS (NM_030150)	-37.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	76.66	94.46	53.65	116.05	106.36	103.69	154.2	175.1	114.91
Merged-chr4-128993160-3	chr4	128992652	128993652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033966)	promoter-TSS (NM_001033966)	-72.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	68.07	67.74	49.02	70.17	73.71	79.58	101.39	101.26	53.08
Merged-chr4-45011725-3	chr4	45011225	45012225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163284, exon 1 of 2)	5' UTR (NM_001163284, exon 1 of 2)	687.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	374.7	408.25	299.68	284.06	294.37	236.31	301.01	376.73	208.59
Merged-chrX-20961647-3	chrX	20961175	20962175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027445)	promoter-TSS (NR_027445)	-1.0	NR_027445	320742.0	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	166.47	156.67	111.92	126.85	131.56	109.32	115.12	151.22	79.94
Merged-chr2-103606789-1	chr2	103606289	103607289	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	40479.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	33.75	30.41	23.12	20.92	13.06	17.68	22.18	15.92	8.12
Merged-chr15-39957836-3	chr15	39957345	39958345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4804.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	58.35	59.9	60.12	82.99	57.38	63.5	53.87	42.45	31.85
Merged-chr19-12573442-3	chr19	12572926	12573926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-84.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	103.54	176.02	133.19	106.61	143.22	131.82	167.93	209.59	153.63
Merged-chr13-81711097-3	chr13	81710645	81711645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028372)	promoter-TSS (NM_028372)	-132.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	53.77	50.23	37.0	55.33	62.98	61.09	52.81	50.85	22.48
Merged-chr1-172310064-5	chr1	172309566	172310566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2301.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	180.2	158.97	123.94	178.8	139.95	102.88	229.19	204.72	73.07
Merged-chr13-21468570-3	chr13	21468070	21469070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025719)	promoter-TSS (NM_025719)	-69.0	NM_025719	66707.0	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	9.72	9.68	12.95	16.87	9.8	16.88	9.51	3.1	5.0
Merged-chr2-181497662-2	chr2	181497160	181498160	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111899, intron 1 of 5)	intron (NR_111899, intron 1 of 5)	518.0	NM_001291204	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	249.99	297.21	209.96	263.14	298.57	211.4	230.25	255.13	121.16
Merged-chr12-87147605-3	chr12	87147108	87148108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-99.0	NM_001252556	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	53.2	73.26	81.4	78.94	79.31	90.02	86.61	72.07	63.7
Merged-chr6-100381281-3	chr6	100380783	100381783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93925.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	9.72	3.69	6.47	8.1	4.67	4.82	5.28	5.31	8.74
Merged-chr11-8535055-3	chr11	8534571	8535571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 10 of 30)	intron (NM_001083587, intron 10 of 30)	129464.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	11.44	6.91	9.25	4.05	1.4	0.0	6.34	4.42	9.37
Merged-chr8-104534959-3	chr8	104534449	104535449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	249.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	123.56	136.85	96.2	139.67	135.29	114.94	144.7	114.96	58.71
Merged-chr11-101467633-3	chr11	101467131	101468131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-544.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	131.57	71.88	17.57	112.0	91.9	67.52	66.54	68.98	31.85
Merged-chr19-47936592-3	chr19	47936099	47937099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3G|LINE|L1	-1113.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	92.1	112.43	78.62	74.22	125.02	74.75	109.84	137.07	66.82
Merged-chr9-83575565-3	chr9	83575048	83576048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	27210.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	68.07	56.68	20.35	94.46	70.44	65.11	38.02	34.93	14.36
Merged-chr7-28376510-3	chr7	28375998	28376998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011756)	TTS (NM_011756)	2730.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	276.3	257.12	169.27	229.4	179.14	154.33	233.42	268.4	194.23
Merged-chr14-103487152-3	chr14	103486662	103487662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26179.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	55.49	57.6	52.72	75.57	52.25	65.91	50.7	69.86	36.22
Merged-chr11-111096812-3	chr11	111096318	111097318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30654.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	53.77	48.38	36.07	43.18	39.19	35.37	52.81	48.2	25.61
Merged-chr5-110269913-3	chr5	110269431	110270431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163538)	promoter-TSS (NM_001163538)	-32.0	NM_001163538	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	31.46	20.74	42.55	29.01	30.32	35.37	44.36	23.88	27.48
Merged-chr5-3596613-3	chr5	3596138	3597138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172991)	promoter-TSS (NM_172991)	-91.0	NM_172991	269623.0	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	80.09	70.5	32.37	78.94	75.11	54.66	68.65	56.6	35.6
Merged-chr17-94834920-3	chr17	94834409	94835409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-110.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	42.33	25.34	40.7	30.36	39.19	65.91	62.31	51.29	46.84
Merged-chr14-19419343-3	chr14	19418816	19419816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	183271.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	67.5	303.2	61.97	99.86	372.27	82.79	167.93	169.35	64.33
Merged-chr11-96065353-3	chr11	96064821	96065821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172300)	promoter-TSS (NM_172300)	43.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	102.4	75.11	108.22	93.11	69.04	131.02	109.84	63.23	84.94
Merged-chr9-65581127-3	chr9	65580630	65581630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	157.89	94.92	99.89	145.06	84.9	103.69	195.39	176.42	74.32
Merged-chr9-21029591-3	chr9	21029084	21030084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010493)	TTS (NM_010493)	211.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	16.59	11.52	16.65	11.47	8.4	16.08	26.4	15.03	17.49
Merged-chr14-25460325-3	chr14	25459808	25460808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	1123.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	237.4	245.14	176.67	196.34	210.86	229.08	197.51	183.94	96.18
Merged-chr12-8519671-3	chr12	8519157	8520157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19648.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	208.23	244.68	189.62	213.89	250.52	217.02	239.75	240.54	124.28
Merged-chr15-101244158-3	chr15	101243694	101244694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19008.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	160.18	146.99	133.19	148.44	104.03	143.88	186.94	206.93	99.92
Merged-chr4-137993406-3	chr4	137992903	137993903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172703)	promoter-TSS (NM_172703)	-53.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	164.18	118.42	90.65	179.47	108.7	149.5	148.92	91.97	56.83
Merged-chr15-81586108-3	chr15	81585598	81586598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177821)	promoter-TSS (NM_177821)	-116.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	381.56	447.88	441.2	331.29	311.16	385.01	367.55	303.77	297.9
Merged-chr5-3355604-3	chr5	3355114	3356114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	11721.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	141.87	152.06	55.5	190.27	147.88	135.04	143.64	134.86	98.68
Merged-chr14-50955712-1	chr14	50955212	50956212	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123371)	promoter-TSS (NM_001123371)	-429.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	43.3	50.41	22.48
Merged-chr11-115163268-3	chr11	115162780	115163780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012030)	promoter-TSS (NM_012030)	-61.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	191.64	156.67	142.44	200.39	149.75	146.29	186.94	185.27	66.2
Merged-chr19-4302418-3	chr19	4301909	4302909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	3813.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	32.61	22.12	54.57	45.21	31.72	38.58	48.58	41.12	33.1
Merged-chr3-27449631-3	chr3	27449122	27450122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 23 of 26)	intron (NM_001356953, intron 23 of 26)	78271.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	14.3	20.27	12.02	24.96	21.46	25.72	30.63	15.92	6.87
Merged-chr6-48410082-3	chr6	48409548	48410548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362145, intron 9 of 15)	intron (NM_001362145, intron 9 of 15)	14462.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	8.58	13.36	10.17	9.45	12.13	13.66	21.12	13.71	11.24
Merged-chr19-46961873-3	chr19	46961344	46962344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	CpG	507.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	164.75	126.25	219.21	208.49	129.22	127.8	167.93	114.08	108.67
Merged-chr6-129098046-3	chr6	129097539	129098539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	2864.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	54.35	60.82	30.52	36.43	55.51	43.4	42.25	49.96	17.49
Merged-chr4-150730435-3	chr4	150729942	150730942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78268.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	30.32	19.35	19.42	25.64	11.2	24.92	42.25	12.82	19.98
Merged-chr7-68129236-3	chr7	68128731	68129731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135002.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	23.45	30.87	30.52	22.27	35.92	50.64	29.57	22.55	33.72
Merged-chr6-38871181-3	chr6	38870606	38871606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	5084.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	111.55	124.41	83.25	105.93	88.17	102.88	100.34	102.58	53.71
Merged-chr17-84119387-3	chr17	84118869	84119869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40709.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	46.34	45.62	46.25	70.17	60.65	79.58	42.25	24.76	32.48
Merged-chr11-98400314-3	chr11	98399795	98400795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033537, exon 1 of 8)	exon (NM_001033537, exon 1 of 8)	195.0	NM_001033537	320655.0	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	54.35	56.68	60.12	42.51	64.38	73.14	62.31	42.89	33.72
Merged-chr11-22666187-3	chr11	22665667	22666667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153884.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	42.9	35.48	17.57	35.09	18.19	12.06	19.01	25.2	13.12
Merged-chr4-8700376-3	chr4	8699885	8700885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	9979.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	41.76	47.0	38.85	51.95	43.85	49.83	49.64	46.43	39.97
Merged-chr1-153803151-3	chr1	153802651	153803651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40990.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	171.62	155.75	96.2	178.13	118.96	73.95	94.0	70.75	35.6
Merged-chr4-109457003-3	chr4	109456499	109457499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013876, exon 2 of 3)	exon (NM_013876, exon 2 of 3)	19506.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	90.38	86.63	53.65	70.17	79.31	49.03	92.94	97.72	38.72
Merged-chr12-28635928-3	chr12	28635407	28636407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	46.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	149.31	154.82	89.72	164.63	193.6	151.11	227.08	171.12	118.66
Merged-chr1-121567979-3	chr1	121567468	121568468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	12.0	NM_025860	66942.0	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	37.18	29.49	27.75	52.63	42.45	46.62	49.64	34.49	18.74
Merged-chr16-22265996-3	chr16	22265494	22266494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	11.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	413.02	396.27	314.48	338.71	323.76	290.17	241.87	327.2	234.82
Merged-chr16-78490425-3	chr16	78489912	78490912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69904.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	11.44	10.14	3.7	20.24	9.33	5.63	13.73	4.42	8.74
Merged-chr3-38423583-3	chr3	38423088	38424088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61228.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	52.63	51.61	45.32	21.59	25.19	24.11	14.79	16.36	13.74
Merged-chr16-92058254-3	chr16	92057777	92058777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017391)	promoter-TSS (NM_017391)	-45.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	74.37	49.76	68.45	82.99	66.71	74.75	95.06	64.56	41.22
Merged-chr7-118243801-3	chr7	118243312	118244312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027879)	promoter-TSS (NR_027879)	-95.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	197.93	171.41	156.32	190.27	126.89	147.9	186.94	126.02	111.17
Merged-chr11-49243907-3	chr11	49243388	49244388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-303.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	247.7	187.08	150.77	224.68	165.61	140.66	233.42	179.96	106.79
Merged-chr13-37963610-3	chr13	37963121	37964121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30587.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	70.93	59.44	42.55	57.35	34.06	60.28	49.64	34.05	32.48
Merged-chr9-119418244-1	chr9	119417744	119418744	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007397, intron 1 of 9)	intron (NM_007397, intron 1 of 9)	16066.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	6.86	3.23	2.77	4.05	4.2	7.23	33.8	19.9	19.98
Merged-chr11-69016002-3	chr11	69015518	69016518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013256, exon 1 of 23)	5' UTR (NM_001013256, exon 1 of 23)	107.0	NM_001013256	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	184.77	188.0	143.37	154.51	169.81	138.25	163.71	234.35	115.54
Merged-chrX-102037043-3	chrX	102036564	102037564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	34243.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	19.45	25.8	19.42	33.06	20.99	26.53	26.4	22.99	17.49
Merged-chr14-52305099-3	chr14	52304630	52305630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019721)	promoter-TSS (NM_019721)	-6.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	90.38	73.73	81.4	89.74	63.45	90.02	109.84	80.03	86.81
Merged-chr18-36726667-3	chr18	36726134	36727134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009841, exon 1 of 2)	5' UTR (NM_009841, exon 1 of 2)	181.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	331.79	355.26	224.76	300.92	305.56	237.12	287.28	376.73	154.88
Merged-chr11-67604605-3	chr11	67604113	67605113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	8058.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	14.3	8.29	7.4	10.8	6.53	8.04	16.9	12.38	9.99
Merged-chr5-3420320-3	chr5	3419810	3420810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76417.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	126.42	122.11	87.87	168.0	113.83	111.73	130.97	161.39	76.19
Merged-chr6-97479419-3	chr6	97478916	97479916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	LTR16A|LTR|ERVL	8404.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	364.97	255.27	208.11	370.42	250.98	223.45	286.23	307.75	117.41
Merged-chr12-80793062-3	chr12	80792554	80793554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	2522.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	143.01	165.88	73.07	120.1	111.03	82.79	160.54	186.59	63.7
Merged-chr3-108856124-3	chr3	108855638	108856638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15636.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	202.51	184.31	58.27	101.21	49.92	32.96	95.06	84.9	41.84
Merged-chr16-30395312-3	chr16	30394803	30395803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6773.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	32.04	25.8	25.9	37.78	25.66	42.6	32.74	26.09	34.35
Merged-chr10-128412790-3	chr10	128412293	128413293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026259, intron 1 of 7)	intron (NM_026259, intron 1 of 7)	1177.0	NM_026259	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	77.23	71.42	52.72	64.1	40.59	81.18	78.16	87.55	81.19
Merged-chr6-85029124-3	chr6	85028626	85029626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	40387.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	44.05	50.69	26.82	91.09	69.51	49.03	82.38	63.23	25.61
Merged-chrX-140529273-3	chrX	140528756	140529756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13412.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	32.61	30.41	22.2	45.88	19.59	37.78	35.91	25.65	31.23
Merged-chr7-44405789-3	chr7	44405278	44406278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21652.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	31.46	40.55	46.25	28.34	30.79	45.01	29.57	40.24	20.61
Merged-chr5-72259539-3	chr5	72259034	72260034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 10 of 22)	intron (NR_003966, intron 10 of 22)	56191.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	51.48	53.45	21.27	70.85	49.92	37.78	55.98	50.41	19.36
Merged-chr7-49468012-3	chr7	49467538	49468538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	168797.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	28.6	23.5	4.62	22.94	21.46	22.51	11.62	23.88	1.25
Merged-chr1-172347606-3	chr1	172347097	172348097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	Charlie1b|DNA|hAT-Charlie	6387.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	117.27	123.03	73.07	129.55	113.36	151.92	185.89	149.45	88.06
Merged-chr8-40851121-1	chr8	40850621	40851621	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11246.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	1.14	1.84	2.77	0.67	2.8	0.8	22.18	18.57	15.61
Merged-chr3-139074858-4	chr3	139074330	139075330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	CpG	371.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	98.39	127.64	120.24	103.91	75.11	93.24	103.51	73.4	108.04
Merged-chr11-6626042-3	chr11	6625543	6626543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130457)	promoter-TSS (NM_001130457)	24.0	NM_001130457	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	324.35	285.69	198.87	246.95	232.32	229.88	297.84	296.25	161.75
Merged-chr5-123945456-2	chr5	123944951	123945951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001134767, intron 5 of 12)	intron (NM_001134767, intron 5 of 12)	14762.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	40.04	34.56	37.92	41.16	35.45	9.65	5.28	1.33	1.25
Merged-chr5-148493129-3	chr5	148492644	148493644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58529.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	131.0	95.38	56.42	153.84	124.09	78.77	65.48	49.52	48.71
Merged-chr4-56802412-3	chr4	56801872	56802872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-41.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	105.26	108.75	72.15	107.95	141.82	122.98	159.48	132.21	79.94
Merged-chr11-104550617-3	chr11	104550126	104551126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285990)	promoter-TSS (NM_001285990)	-6.0	NM_001285988	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	288.89	396.74	237.71	255.72	392.33	261.23	289.39	283.87	177.99
Merged-chr12-25207973-3	chr12	25207469	25208469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78795.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	105.83	109.21	123.94	123.47	153.01	99.67	89.78	68.98	55.58
Merged-chr1-89552640-3	chr1	89552160	89553160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	97849.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	41.76	40.09	55.5	58.7	42.92	49.83	38.02	26.09	19.98
Merged-chr8-117343183-3	chr8	117342683	117343683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5987.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	298.61	247.9	138.74	280.68	209.46	181.66	247.15	294.04	138.02
Merged-chr3-146404627-3	chr3	146404161	146405161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253768)	promoter-TSS (NM_001253768)	19.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	12.59	7.83	11.1	21.59	7.93	17.68	10.56	5.31	1.25
Merged-chr9-45405359-3	chr9	45404859	45405859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-718.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	180.2	151.14	87.87	165.31	114.29	147.9	121.46	150.34	70.57
Merged-chr5-72263157-3	chr5	72262672	72263672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	59829.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	141.3	139.62	77.7	141.02	132.02	67.52	171.1	193.23	64.95
Merged-chr2-90673486-3	chr2	90672986	90673986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3729.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	73.79	83.86	31.45	77.59	48.98	46.62	83.44	47.31	46.22
Merged-chr4-59808619-3	chr4	59808119	59809119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	B3A|SINE|B2	2969.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	29.17	23.5	9.25	24.96	21.46	20.9	22.18	11.5	13.74
Merged-chr5-92375546-3	chr5	92375043	92376043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12247.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	241.41	240.07	160.02	176.78	146.95	142.27	224.97	250.71	134.27
Merged-chr1-144318516-3	chr1	144318004	144319004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69400.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	187.06	257.58	175.74	259.09	298.57	210.59	184.83	229.48	141.77
Merged-chr2-154790898-3	chr2	154790375	154791375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139511)	promoter-TSS (NM_001139511)	-235.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	175.05	106.44	108.22	140.34	87.7	105.3	140.47	105.68	66.82
Merged-chr11-85525193-3	chr11	85524685	85525685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172021.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	129.28	89.85	53.65	285.41	227.19	178.44	133.08	181.29	57.46
Merged-chr10-81134442-3	chr10	81133940	81134940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1831.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	191.64	140.54	120.24	171.38	106.36	114.14	185.89	179.08	121.78
Merged-chr13-112735244-3	chr13	112734734	112735734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178746, exon 15 of 15)	3' UTR (NM_178746, exon 15 of 15)	-65543.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	16.02	17.05	18.5	39.81	32.19	31.35	14.79	8.4	9.99
Merged-chr2-150786704-3	chr2	150786218	150787218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153781)	promoter-TSS (NM_153781)	-78.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	77.23	84.78	81.4	79.62	73.71	93.24	69.71	81.36	59.33
Merged-chr19-37550469-3	chr19	37549972	37550972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175353)	promoter-TSS (NM_175353)	54.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	139.58	111.51	74.92	115.38	90.5	87.61	122.52	82.69	55.58
Merged-chr3-79089252-3	chr3	79088751	79089751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 11 of 23)	intron (NM_001099624, intron 11 of 23)	55636.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	79.52	84.78	59.2	99.18	69.04	81.99	72.88	88.88	44.97
Merged-chr8-104110938-3	chr8	104110437	104111437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5064.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	147.02	135.93	68.45	114.03	112.43	127.8	172.16	191.46	106.79
Merged-chr7-25756251-3	chr7	25755748	25756748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190974)	TTS (NM_001190974)	-1489.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	61.78	57.6	67.52	49.93	45.72	75.56	76.05	84.01	44.34
Merged-chr5-65863606-3	chr5	65863100	65864100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081105)	promoter-TSS (NM_001081105)	31.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	196.79	270.02	157.24	209.84	150.22	130.21	138.36	164.93	129.9
Merged-chr15-102722192-3	chr15	102721674	102722674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026192)	promoter-TSS (NM_026192)	4.0	NM_026192	67488.0	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	46.34	45.62	48.1	45.21	45.25	28.13	55.98	49.52	28.73
Merged-chr4-53270097-3	chr4	53269536	53270536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	RMER1B|Other|Other	196.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	28.03	31.33	18.5	51.28	25.66	33.76	30.63	15.92	16.24
Merged-chr9-18473673-3	chr9	18473179	18474179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028935)	promoter-TSS (NM_028935)	-34.0	NM_028160	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	54.35	61.75	73.07	93.79	83.97	84.4	94.0	98.6	61.83
Merged-chr2-51022669-2	chr2	51022176	51023176	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	112992.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	5.15	6.91	1.85	35.76	30.32	10.45	35.91	23.43	6.87
Merged-chr7-80232736-3	chr7	80232240	80233240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011870)	promoter-TSS (NM_011870)	65.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	76.66	60.36	51.8	82.99	68.58	65.11	83.44	83.13	32.48
Merged-chr4-35130820-3	chr4	35130329	35131329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-21226.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	42.33	37.78	29.6	33.06	21.93	32.96	13.73	23.43	16.86
Merged-chr7-27357590-5	chr7	27357078	27358078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199236, intron 18 of 18)	intron (NM_001199236, intron 18 of 18)	-1570.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	108.12	120.73	159.09	92.44	108.7	133.43	138.36	133.98	113.66
Merged-chr7-90130233-3	chr7	90129726	90130726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	13.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	323.21	243.75	170.19	371.09	272.91	231.49	330.59	304.21	155.51
Merged-chr11-32559035-3	chr11	32558542	32559542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	25776.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	217.38	213.34	151.69	199.72	170.28	163.17	183.78	214.89	125.53
Merged-chr1-173451867-3	chr1	173451377	173452377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	31273.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	25.74	21.66	47.17	30.36	26.12	38.58	42.25	44.66	33.1
Merged-chr8-36613978-3	chr8	36613476	36614476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015802)	promoter-TSS (NM_015802)	-33.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	18.31	10.14	5.55	26.99	23.33	31.35	27.46	18.13	7.49
Merged-chr5-43187519-3	chr5	43187004	43188004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	ORR1F|LTR|ERVL-MaLR	-45959.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	38.9	53.45	49.95	58.03	65.78	49.83	87.66	111.43	53.08
Merged-chr11-119085579-3	chr11	119085116	119086116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	621.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	246.56	200.9	239.56	259.77	179.14	160.76	189.06	153.43	149.89
Merged-chr1-54837867-3	chr1	54837364	54838364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	88523.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	68.65	57.6	48.1	108.63	68.58	56.27	83.44	52.18	39.35
Merged-chr12-80833728-3	chr12	80833199	80834199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	43167.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	119.56	115.66	68.45	116.05	77.91	70.73	174.27	179.08	67.45
Merged-chr15-82354344-3	chr15	82353849	82354849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025987)	promoter-TSS (NM_025987)	-58.0	NM_025987	67130.0	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	235.69	251.13	183.14	236.83	309.3	218.63	227.08	261.32	134.27
Merged-chr10-57836246-1	chr10	57835746	57836746	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	41702.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	34.9	40.55	28.67	37.78	34.06	52.25	39.08	32.72	21.23
Merged-chr4-121215107-3	chr4	121214621	121215621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346660)	promoter-TSS (NM_001346660)	-37.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	224.82	234.08	162.79	224.68	209.0	131.82	164.76	145.92	106.79
Merged-chr11-106675467-3	chr11	106674946	106675946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	39835.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	338.08	270.48	210.89	282.71	179.14	171.21	173.21	208.26	153.63
Merged-chr11-43433716-3	chr11	43433233	43434233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148673)	promoter-TSS (NM_148673)	2.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	96.11	99.53	75.85	102.56	118.49	82.79	114.07	110.98	80.56
Merged-chr17-6778482-3	chr17	6777971	6778971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	4309.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	152.17	193.07	102.67	141.02	136.22	108.51	129.91	198.98	127.4
Merged-chr4-141871169-3	chr4	141870655	141871655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3765.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	321.49	315.64	272.86	172.05	190.34	178.44	291.51	308.63	190.48
Merged-chr11-104425273-3	chr11	104424764	104425764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081045, exon 2 of 14)	5' UTR (NM_001081045, exon 2 of 14)	17027.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	139.58	130.4	91.57	100.53	108.7	94.04	128.85	111.43	82.44
Merged-chr13-98912809-3	chr13	98912333	98913333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	13551.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.86	5.99	7.4	13.49	3.27	1.61	13.73	8.84	11.24
Merged-chr17-27910353-3	chr17	27909845	27910845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	1039.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	262.0	317.02	273.79	208.49	203.4	185.68	229.19	302.88	169.87
Merged-chr18-36365206-3	chr18	36364723	36365723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	16599.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	70.36	43.77	42.55	74.89	64.84	90.02	70.76	49.52	33.1
Merged-chr7-126799816-2	chr7	126799298	126800298	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-544.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	454.78	399.04	356.11	396.73	325.62	274.9	255.6	357.71	202.97
Merged-chr9-96631551-3	chr9	96631047	96632047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053268)	promoter-TSS (NM_053268)	-44.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	165.9	77.41	63.82	158.56	72.31	65.91	120.41	52.18	37.47
Merged-chr19-4148571-3	chr19	4148064	4149064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-99.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	127.57	112.43	140.59	122.8	115.69	121.37	137.3	139.72	91.18
Merged-chr14-30870380-2	chr14	30869881	30870881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-8876.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	26.89	18.43	26.82	34.41	20.53	41.8	27.46	13.71	8.74
Merged-chr3-16184677-3	chr3	16184158	16185158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 2 of 5)	intron (NM_172677, intron 2 of 5)	1493.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	196.79	273.71	82.32	206.46	254.25	108.51	218.63	275.03	99.3
Merged-chr9-21237646-3	chr9	21237126	21238126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	1706.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	263.72	230.85	192.39	300.25	259.38	231.49	304.18	300.23	161.75
Merged-chr18-77714499-3	chr18	77713998	77714998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	314.0	NR_027978	67640.0	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	100.11	67.74	49.95	94.46	67.18	67.52	48.58	42.01	45.59
Merged-chr1-131097839-3	chr1	131097345	131098345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008551)	promoter-TSS (NM_008551)	-2.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	303.76	200.44	225.69	273.26	129.69	173.62	238.7	149.01	78.69
Merged-chr10-81496465-3	chr10	81495962	81496962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134009)	promoter-TSS (NM_134009)	-99.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	48.05	64.05	51.8	62.75	56.45	53.85	88.72	84.01	57.46
Merged-chr7-100242551-3	chr7	100242050	100243050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	14943.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	52.06	96.3	70.3	89.74	63.91	78.77	85.55	106.56	65.58
Merged-chr9-62980879-3	chr9	62980342	62981342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019663)	promoter-TSS (NM_019663)	37.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	201.36	172.33	148.92	194.99	150.22	140.66	182.72	141.49	111.79
Merged-chr6-137386532-3	chr6	137386030	137387030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-24191.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	46.91	44.24	25.9	16.19	16.33	27.33	20.07	20.34	21.86
Merged-chr8-13159178-3	chr8	13158677	13159677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317353)	promoter-TSS (NM_001317353)	16.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	305.48	222.56	243.26	301.6	216.46	190.5	302.07	194.11	163.0
Merged-chr11-60707872-3	chr11	60707381	60708381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008502, intron 11 of 20)	intron (NM_008502, intron 11 of 20)	8191.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	22.88	10.6	6.47	24.96	11.66	9.65	12.67	12.38	12.49
Merged-chr9-50533505-3	chr9	50533018	50534018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133217, exon 12 of 12)	exon (NM_133217, exon 12 of 12)	-4877.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	35.47	24.88	17.57	27.66	27.99	33.76	28.52	21.67	35.6
Merged-chr7-97027062-3	chr7	97026558	97027558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-54693.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	54.92	60.36	50.87	83.66	52.72	71.54	60.2	72.96	42.47
Merged-chr8-70761076-3	chr8	70760588	70761588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183170)	promoter-TSS (NM_183170)	-167.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	97.25	84.32	80.47	116.05	92.84	82.79	105.62	116.73	45.59
Merged-chr12-21389669-1	chr12	21389169	21390169	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011739)	TTS (NM_011739)	-16037.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	2.86	5.53	1.85	2.7	2.33	1.61	25.35	27.41	21.23
Merged-chr6-85937055-3	chr6	85936549	85937549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21078.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	22.31	32.25	18.5	26.99	30.32	33.76	35.91	27.86	28.73
Merged-chr5-68735368-3	chr5	68734861	68735861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	606348.0	NM_175519	243043.0	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	22.88	27.65	3.7	24.29	14.93	12.86	23.24	18.13	24.98
Merged-chr6-6217157-3	chr6	6216650	6217650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015829)	promoter-TSS (NM_015829)	23.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	11.44	13.82	7.4	32.39	36.39	36.97	8.45	4.42	7.49
Merged-chr18-65490540-3	chr18	65490028	65491028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59531.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	31.46	13.36	8.32	27.66	8.4	20.9	10.56	2.21	1.25
Merged-chr11-119875873-3	chr11	119875381	119876381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-6408.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	48.05	58.52	38.85	68.82	67.18	82.79	87.66	62.35	38.1
Merged-chr16-55733971-3	chr16	55733453	55734453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88185.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	42.9	29.03	12.02	77.59	66.24	42.6	38.02	30.07	12.49
Merged-chr3-116861866-3	chr3	116861374	116862374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 1 of 16)	intron (NM_009146, intron 1 of 16)	194.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	152.17	187.08	84.17	173.4	212.26	127.0	212.29	256.01	134.9
Merged-chr9-119102448-3	chr9	119101966	119102966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177117)	promoter-TSS (NM_177117)	-12.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	96.11	87.09	60.12	90.41	83.04	89.22	99.28	110.1	73.69
Merged-chr9-22307725-3	chr9	22307209	22308209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145612)	promoter-TSS (NM_145612)	-71.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	295.75	299.97	208.11	242.22	265.44	208.98	282.0	305.1	153.01
Merged-chr10-76345381-3	chr10	76344880	76345880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-89.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	37.76	26.73	31.45	37.11	46.65	47.42	63.37	49.52	14.99
Merged-chr1-34716645-2	chr1	34716154	34717154	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80444.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	6.86	5.99	9.25	71.52	67.18	61.09	110.9	128.23	71.2
Merged-chr3-123267976-3	chr3	123267492	123268492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 1 of 22)	CpG	496.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	205.37	189.84	156.32	250.99	181.01	147.09	165.82	187.04	83.06
Merged-chr13-4756586-3	chr13	4756080	4757080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-147416.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	25.17	30.41	1.85	58.7	27.52	23.31	15.84	15.03	3.12
Merged-chr5-43355382-3	chr5	43354864	43355864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120010.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	33.18	29.95	14.8	66.12	49.92	35.37	91.89	68.98	22.48
Merged-chr11-100701489-2	chr11	100700990	100701990	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030150, intron 6 of 12)	intron (NM_030150, intron 6 of 12)	2781.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	3.43	5.07	7.4	46.56	25.66	38.58	44.36	45.1	19.36
Merged-chr6-24166954-2	chr6	24166456	24167456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	MIR|SINE|MIR	1136.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	6.86	7.37	3.7	9.45	6.06	5.63	4.22	0.44	0.62
Merged-chr9-47530190-3	chr9	47529680	47530680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	10.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	95.53	117.5	74.0	126.17	86.77	97.26	94.0	104.79	67.45
Merged-chr6-85137551-5	chr6	85137060	85138060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011467, exon 1 of 3)	exon (NM_011467, exon 1 of 3)	204.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	113.27	135.93	104.52	105.93	102.63	119.76	83.44	83.57	80.56
Merged-chr8-122377040-1	chr8	122376540	122377540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001029993, intron 1 of 18)	CpG	424.0	NM_001029993	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	150.45	144.23	132.27	132.92	100.3	115.75	152.09	77.82	80.56
Merged-chr12-79841528-3	chr12	79841033	79842033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83200.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	29.17	12.44	14.8	29.69	20.06	26.53	14.79	15.92	17.49
Merged-chr6-147091496-3	chr6	147090998	147091998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081237, exon 1 of 3)	5' UTR (NM_001081237, exon 1 of 3)	423.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	24.03	23.5	12.95	36.43	40.59	47.42	27.46	21.22	23.11
Merged-chr3-138958762-3	chr3	138958260	138959260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 7 of 13)	intron (NM_001356388, intron 7 of 13)	116441.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	20.59	18.89	20.35	9.45	16.79	21.7	20.07	18.13	14.99
Merged-chr4-59626172-4	chr4	59625690	59626690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153158)	promoter-TSS (NM_153158)	-21.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	25.17	10.14	6.47	39.13	14.93	23.31	44.36	17.69	5.62
Merged-chr8-8649780-3	chr8	8649294	8650294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10979.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.72	5.07	10.17	10.12	11.66	12.06	5.28	2.65	4.37
Merged-chr18-5806510-3	chr18	5806020	5807020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	213873.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	109.26	115.66	98.97	158.56	89.1	122.18	92.94	82.24	72.45
Merged-chr9-64790848-3	chr9	64790355	64791355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20156.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	139.58	117.5	83.25	107.28	76.51	52.25	53.87	78.26	51.84
Merged-chr16-91451975-3	chr16	91451478	91452478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	117.84	110.59	70.3	102.56	79.31	89.22	124.63	112.31	94.3
Merged-chr12-112808914-3	chr12	112808404	112809404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145450)	promoter-TSS (NM_145450)	-71.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	67.5	55.29	49.95	8.77	3.27	5.63	6.34	6.19	5.62
Merged-chr11-60777414-3	chr11	60776921	60777921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	-56.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	477.09	546.95	394.03	493.89	628.39	438.87	508.03	688.01	276.04
Merged-chr11-8709746-3	chr11	8709238	8710238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-45203.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	52.63	39.63	30.52	47.23	50.38	33.76	64.43	51.29	21.86
Merged-chr1-170282626-3	chr1	170282127	170283127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012009, intron 2 of 3)	intron (NM_012009, intron 2 of 3)	5309.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	32.04	17.51	19.42	39.81	22.39	28.94	14.79	15.48	3.75
Merged-chr14-52120354-3	chr14	52119850	52120850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168515, intron 4 of 24)	intron (NM_001168515, intron 4 of 24)	9447.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	57.78	45.16	19.42	29.01	29.39	28.13	46.47	70.75	64.33
Merged-chr19-29461444-3	chr19	29460924	29461924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	MTC|LTR|ERVL-MaLR	50505.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	108.69	83.86	68.45	108.63	61.58	78.77	101.39	69.86	50.59
Merged-chr5-123394635-3	chr5	123394130	123395130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-168.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	262.0	225.32	170.19	281.36	178.67	182.46	252.43	224.18	116.16
Merged-chr17-69417399-3	chr17	69416915	69417915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026848, exon 1 of 1)	non-coding (NR_026848, exon 1 of 1)	968.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	375.27	460.78	326.51	354.23	491.7	392.25	410.86	441.73	188.61
Merged-chr7-64872991-3	chr7	64872494	64873494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	46.0	NM_023239	66647.0	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	95.53	100.91	85.1	90.41	94.23	100.47	108.79	68.09	71.82
Merged-chr15-59728325-3	chr15	59727825	59728825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66634.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	223.1	225.32	122.09	224.68	178.21	130.21	189.06	226.39	127.4
Merged-chr1-106317134-3	chr1	106316620	106317620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 3 of 16)	intron (NM_133821, intron 3 of 16)	145251.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	40.04	35.48	25.9	53.98	43.85	32.15	34.85	17.24	18.11
Merged-chr4-139161226-3	chr4	139160725	139161725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	19430.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	36.61	24.88	30.52	35.09	27.52	32.96	23.24	26.53	18.74
Merged-chr7-44553968-3	chr7	44553458	44554458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	7.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	394.14	479.22	345.93	308.35	309.3	340.81	284.11	410.77	264.18
Merged-chr7-19749781-3	chr7	19749276	19750276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-203.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	77.8	54.83	49.02	53.98	34.52	49.83	68.65	66.33	36.85
Merged-chr3-108146183-3	chr3	108145722	108146722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010306)	promoter-TSS (NM_010306)	-70.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	132.14	159.89	138.74	152.49	125.49	126.19	128.85	145.92	88.06
Merged-chr6-87541138-3	chr6	87540649	87541649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7890.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	221.96	223.02	142.44	245.6	162.81	175.23	199.62	265.3	127.4
Merged-chr15-25267165-3	chr15	25266668	25267668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146596.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	64.07	49.3	27.75	80.29	71.84	51.44	45.42	48.64	21.23
Merged-chr17-70755125-3	chr17	70754623	70755623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	91654.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	20.59	18.89	12.02	33.74	16.33	44.21	13.73	17.24	16.86
Merged-chr8-56301455-3	chr8	56300943	56301943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	6891.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	89.24	85.71	49.02	72.19	56.45	56.27	67.6	89.76	74.94
Merged-chr16-46010466-3	chr16	46009958	46010958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-45.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	54.35	70.5	19.42	87.04	107.76	69.93	74.99	54.39	31.23
Merged-chrUn_JH584304-6413-1	chrUn_JH584304	5913	6913	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53276.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	51.75	43.33	0.0
Merged-chr11-79993082-3	chr11	79992585	79993585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163018)	promoter-TSS (NM_001163018)	-21.0	NM_001163018	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	121.85	88.01	88.8	116.05	84.44	81.99	110.9	76.05	64.95
Merged-chr15-78257936-3	chr15	78257409	78258409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13098.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	466.8	403.19	253.44	440.59	328.42	293.38	415.08	458.53	225.45
Merged-chr2-94273404-3	chr2	94272892	94273892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11993.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	74.94	41.47	7.4	127.52	76.97	40.99	83.44	44.66	17.49
Merged-chr8-104641731-3	chr8	104641248	104642248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026753)	promoter-TSS (NM_026753)	-20.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	107.55	107.82	106.37	99.86	104.03	90.02	120.41	110.1	56.21
Merged-chr7-25316713-3	chr7	25316216	25317216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-448.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	20.59	26.26	24.05	22.94	11.2	30.54	23.24	15.48	20.61
Merged-chr13-55321924-3	chr13	55321327	55322327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025596)	promoter-TSS (NM_025596)	153.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	77.8	65.43	67.52	60.05	39.65	95.65	74.99	52.18	51.21
Merged-chr6-136684245-1	chr6	136683745	136684745	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22352.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	18.31	17.51	8.32	14.17	7.0	8.84	79.21	91.53	36.85
Merged-chr1-136683960-3	chr1	136683452	136684452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045325, intron 1 of 2)	intron (NR_045325, intron 1 of 2)	323.0	NR_045325	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	102.97	120.26	67.52	125.5	111.96	127.8	96.11	110.54	86.81
Merged-chr2-84798296-3	chr2	84797805	84798805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-523.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	33.75	37.78	24.97	47.9	18.66	53.05	48.58	53.06	29.35
Merged-chr13-93251951-3	chr13	93251444	93252444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-51813.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	20.02	17.05	22.2	20.24	18.19	20.9	15.84	19.46	14.99
Merged-chr8-31168800-3	chr8	31168297	31169297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026453)	promoter-TSS (NM_026453)	-73.0	NM_026453	67920.0	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	68.65	92.62	83.25	51.28	74.17	72.34	137.3	137.07	119.91
Merged-chr2-68861201-5	chr2	68860649	68861649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-292.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	103.54	70.5	98.97	91.76	55.51	90.83	88.72	91.97	69.32
Merged-chr14-45583841-3	chr14	45583330	45584330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	40120.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	6.86	3.23	5.55	6.75	2.33	3.22	9.51	3.54	3.75
Merged-chr18-34410956-2	chr18	34410449	34411449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016927, intron 2 of 14)	B3|SINE|B2	1526.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	42.9	27.65	18.5	63.42	58.78	16.88	0.0	1.33	1.25
Merged-chr5-108448877-3	chr5	108448338	108449338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172883, exon 1 of 10)	exon (NM_172883, exon 1 of 10)	262.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	22.31	28.57	34.22	29.69	37.79	36.17	41.19	36.26	25.61
Merged-chr8-110217854-3	chr8	110217349	110218349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146215)	promoter-TSS (NM_146215)	-111.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	51.48	58.06	60.12	51.28	45.25	46.62	85.55	62.35	33.72
Merged-chr10-43221425-3	chr10	43220928	43221928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168289)	promoter-TSS (NM_001168289)	-58.0	NM_027772	71365.0	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	99.54	111.51	76.77	95.14	107.3	107.71	110.9	101.26	73.69
Merged-chrX-93832231-3	chrX	93831729	93832729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145630)	promoter-TSS (NM_145630)	-134.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	44.62	51.15	29.6	66.12	66.24	60.28	62.31	54.39	27.48
Merged-chr1-23383372-3	chr1	23382866	23383866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081079)	promoter-TSS (NM_001081079)	-191.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	42.9	41.93	76.77	46.56	35.92	46.62	49.64	31.39	29.98
Merged-chr5-35582973-3	chr5	35582475	35583475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357020)	promoter-TSS (NM_001357020)	-59.0	NM_001357020	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	240.83	243.29	172.97	238.18	286.44	189.69	240.81	272.37	141.14
Merged-chr7-55918505-3	chr7	55918019	55919019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 23 of 30)	intron (NM_011370, intron 23 of 30)	43974.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	96.68	115.2	91.57	93.79	84.44	76.36	129.91	187.48	135.52
Merged-chr3-89350057-3	chr3	89349555	89350555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009614)	promoter-TSS (NM_009614)	-27.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	29.17	10.6	12.02	33.74	22.39	18.49	10.56	9.29	3.75
Merged-chr2-91084657-3	chr2	91084173	91085173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12005.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	253.99	246.06	134.12	219.28	180.54	184.07	236.59	259.55	187.36
Merged-chr4-129788897-3	chr4	129788411	129789411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31568.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	245.98	224.86	154.47	215.23	154.41	165.58	267.21	362.58	127.4
Merged-chr4-132040254-4	chr4	132039774	132040774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	8804.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	199.65	215.19	139.67	183.52	155.81	135.84	207.01	250.71	154.26
Merged-chr11-77982556-3	chr11	77982024	77983024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-292.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	204.22	228.55	133.19	180.82	173.07	162.37	174.27	255.13	127.4
Merged-chr18-57740349-3	chr18	57739842	57740842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	39653.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	14.87	11.06	3.7	12.14	14.93	8.04	17.96	17.24	14.99
Merged-chr19-46863738-3	chr19	46863244	46864244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98607.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	36.61	41.01	18.5	65.45	67.64	74.75	46.47	31.39	14.99
Merged-chr15-53556297-3	chr15	53555800	53556800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57979.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	57.21	74.19	54.57	41.16	40.59	61.89	40.14	52.62	59.33
Merged-chr9-45955246-3	chr9	45954769	45955769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172257)	promoter-TSS (NM_172257)	-20.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	499.97	459.4	316.33	377.17	380.2	286.15	315.8	305.98	219.83
Merged-chr5-114380602-4	chr5	114380161	114381161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026145)	promoter-TSS (NM_026145)	41.0	NR_138602	117146.0	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	93.82	101.83	155.39	91.09	68.58	120.57	148.92	103.47	84.31
Merged-chr6-117879480-4	chr6	117878934	117879934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	16553.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	477.66	434.98	311.71	416.3	408.19	323.12	393.96	436.86	245.44
Merged-chr15-3979576-3	chr15	3979069	3980069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134099)	promoter-TSS (NM_134099)	4.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	220.81	212.42	164.64	262.47	190.8	172.01	241.87	175.1	141.14
Merged-chr18-50083121-3	chr18	50082632	50083632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-29470.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	106.97	77.41	83.25	93.79	61.11	77.97	95.06	80.47	87.43
Merged-chr6-92214901-3	chr6	92214398	92215398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	-87.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	108.12	79.72	48.1	109.3	123.62	114.94	130.97	101.7	55.58
Merged-chr4-133353592-3	chr4	133353083	133354083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14268.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	28.6	19.35	7.4	48.58	46.65	43.4	44.36	36.7	24.36
Merged-chr9-124424190-3	chr9	124423684	124424684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	397.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	549.74	408.72	345.93	427.1	374.61	294.99	402.41	425.36	257.93
Merged-chr5-125388729-1	chr5	125388229	125389229	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019639, intron 1 of 1)	PB1D9|SINE|Alu	1288.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	191.64	129.94	74.0	147.76	79.77	89.22	177.44	191.02	86.81
Merged-chr19-44422328-4	chr19	44421834	44422834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14625.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	85.81	91.24	48.1	135.62	94.23	55.46	173.21	153.87	48.71
Merged-chr15-103310620-3	chr15	103310138	103311138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030720)	promoter-TSS (NM_030720)	-200.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	93.24	59.44	47.17	67.47	36.85	67.52	66.54	56.16	43.72
Merged-chr3-38112754-3	chr3	38112262	38113262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95357.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	20.02	21.2	4.62	18.89	12.6	16.08	20.07	14.15	16.24
Merged-chr10-116582972-3	chr10	116582454	116583454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1443.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	53.77	96.3	60.12	48.58	73.24	55.46	86.61	110.98	42.47
Merged-chr2-76610877-3	chr2	76610378	76611378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37116.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	16.02	14.28	19.42	26.31	21.93	28.13	16.9	19.46	28.1
Merged-chrX-10714894-3	chrX	10714394	10715394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	41.76	49.3	62.9	51.95	41.52	71.54	74.99	108.33	36.22
Merged-chr5-20941390-3	chr5	20940871	20941871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	-9618.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	60.07	84.78	63.82	70.17	70.44	61.09	85.55	82.24	36.22
Merged-chr12-111432303-3	chr12	111431808	111432808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028807)	TTS (NM_028807)	-10353.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	100.11	82.48	60.12	81.64	66.71	72.34	63.37	61.02	59.95
Merged-chr7-100431340-3	chr7	100430812	100431812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 22 of 32)	intron (NM_001017985, intron 22 of 32)	-41679.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	116.13	98.15	66.6	99.86	57.38	77.16	121.46	123.36	83.06
Merged-chr7-35742184-1	chr7	35741684	35742684	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12270.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	89.81	75.57	73.07	84.34	61.11	84.4	6.34	0.88	2.5
Merged-chr11-73024664-3	chr11	73024151	73025151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	5643.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	84.09	49.3	27.75	60.05	44.78	45.82	46.47	42.45	16.24
Merged-chr4-59548704-3	chr4	59548223	59549223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	CpG	641.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	321.49	293.98	257.14	238.85	259.85	253.19	257.71	233.46	215.46
Merged-chr9-83548328-3	chr9	83547822	83548822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172507)	promoter-TSS (NM_172507)	-16.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	200.22	173.25	78.62	247.62	211.33	159.95	197.51	130.44	80.56
Merged-chr13-52602991-3	chr13	52602475	52603475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6093.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	244.84	148.37	132.27	338.71	219.26	206.57	184.83	169.35	71.2
Merged-chr5-151057166-3	chr5	151056671	151057671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 7 of 13)	intron (NR_153382, intron 7 of 13)	104564.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	18.88	26.73	22.2	26.99	13.06	30.54	24.29	16.36	35.6
Merged-chr13-3771642-3	chr13	3771146	3772146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32672.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	17.16	17.97	17.57	18.89	13.06	12.06	3.17	7.52	11.87
Merged-chr10-90983223-1	chr10	90982723	90983723	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	99520.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	1.72	2.76	3.7	0.67	2.8	3.22	11.62	10.17	6.25
Merged-chr13-104817077-3	chr13	104816564	104817564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026072)	promoter-TSS (NM_026072)	-106.0	NM_026075	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	173.9	185.24	132.27	175.43	164.68	146.29	226.02	215.34	94.93
Merged-chr3-127409075-1	chr3	127408575	127409575	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001327939)	promoter-TSS (NM_001327939)	-17.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.72	0.92	10.17	2.7	2.33	0.0	26.4	19.9	16.24
Merged-chr16-36642851-3	chr16	36642340	36643340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23237.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	171.04	100.91	112.84	145.06	83.04	86.01	111.96	119.39	64.33
Merged-chr11-70446882-3	chr11	70446382	70447382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5049.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	165.32	127.18	130.42	134.94	82.11	118.16	106.67	123.36	101.17
Merged-chr5-148556650-1	chr5	148556150	148557150	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3862.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	10.87	15.67	11.1	10.12	8.4	7.23	91.89	133.53	66.82
Merged-chr14-25459205-3	chr14	25458715	25459715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	30.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	172.19	111.97	136.89	132.24	118.03	99.67	92.94	79.15	69.95
Merged-chr4-53384954-3	chr4	53384435	53385435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55478.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	2.86	5.53	6.47	6.07	3.27	9.65	12.67	7.52	3.75
Merged-chr11-115859738-3	chr11	115859222	115860222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35664.0	NM_001252532	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	4.0	1.38	3.7	14.17	4.2	0.0	3.17	3.98	6.25
Merged-chr15-96699765-3	chr15	96699270	96700270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175121)	promoter-TSS (NM_175121)	-42.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	260.28	219.33	148.92	277.98	218.33	140.66	232.36	169.79	106.79
Merged-chr4-149445481-3	chr4	149444979	149445979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9489.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	46.34	41.01	38.85	35.76	43.85	52.25	34.85	30.07	25.61
Merged-chr8-70477013-3	chr8	70476505	70477505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122830)	promoter-TSS (NM_001122830)	-62.0	NM_178771	234378.0	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	27.46	19.81	37.0	43.86	24.26	40.19	22.18	16.36	11.24
Merged-chr6-6578548-3	chr6	6578034	6579034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009169, exon 1 of 3)	exon (NM_009169, exon 1 of 3)	124.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	241.41	339.14	210.89	277.31	331.69	240.33	279.89	283.87	214.21
Merged-chr1-60916354-3	chr1	60915847	60916847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001281976)	TTS (NM_001281976)	7322.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	34.9	24.42	3.7	20.24	6.53	4.82	15.84	11.05	13.12
Merged-chr11-3104932-1	chr11	3104432	3105432	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR4|LTR|ERVK	-19089.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	18.88	43.77	47.17	22.27	55.51	43.4	114.07	82.69	68.7
Merged-chr19-6242474-3	chr19	6241960	6242960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	792.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	366.69	319.78	175.74	321.84	323.29	204.16	287.28	384.69	168.62
Merged-chr6-129236063-3	chr6	129235561	129236561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	1984.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	171.04	163.12	135.04	168.68	111.5	137.45	172.16	194.55	118.04
Merged-chr2-158175208-2	chr2	158174712	158175712	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16796.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	345.52	207.35	171.12	324.54	262.64	196.93	239.75	285.64	123.03
Merged-chr10-99172244-3	chr10	99171720	99172720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	64085.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	180.2	188.46	125.79	176.78	160.48	131.82	143.64	195.44	91.18
Merged-chr19-21895735-3	chr19	21895225	21896225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	117385.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	42.33	36.4	37.0	29.01	27.99	27.33	24.29	14.15	18.74
Merged-chr8-70804114-3	chr8	70803616	70804616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4333.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	32.61	17.51	23.12	37.11	19.13	43.4	16.9	12.82	11.87
Merged-chr3-95930149-3	chr3	95929623	95930623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253758, intron 1 of 4)	CpG	866.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	86.38	60.36	25.9	97.16	56.45	45.01	79.21	41.56	23.73
Merged-chr3-101600418-3	chr3	101599921	101600921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4286.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	149.88	158.51	92.5	154.51	72.31	102.08	153.15	101.7	91.18
Merged-chr12-85541383-3	chr12	85540891	85541891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	41.19	16.13	25.9	56.68	31.26	38.58	35.91	20.78	16.86
Merged-chr1-93635815-3	chr1	93635317	93636317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-90.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	80.09	82.94	70.3	89.06	106.83	70.73	102.45	81.36	64.33
Merged-chr12-81971275-3	chr12	81970751	81971751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018814, exon 20 of 36)	exon (NM_018814, exon 20 of 36)	111221.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	183.63	244.68	147.07	182.85	288.77	191.3	174.27	215.78	102.42
Merged-chr16-52061342-3	chr16	52060836	52061836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29787.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	346.09	385.22	219.21	358.28	353.61	245.96	294.68	474.89	180.49
Merged-chr7-97251826-3	chr7	97251340	97252340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	74124.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	45.19	52.99	20.35	58.7	39.19	55.46	40.14	59.25	24.36
Merged-chr7-141460844-3	chr7	141460357	141461357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025103)	promoter-TSS (NM_001025103)	-237.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	98.39	79.72	76.77	100.53	64.38	76.36	77.1	99.49	64.95
Merged-chr12-70453083-3	chr12	70452594	70453594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028339)	promoter-TSS (NM_028339)	-60.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	92.1	79.25	49.95	60.05	83.97	75.56	84.49	91.53	66.82
Merged-chr16-92415887-3	chr16	92415388	92416388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-15810.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	176.19	205.51	148.92	209.16	182.87	169.6	160.54	184.38	120.53
Merged-chr10-44069313-3	chr10	44068822	44069822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64476.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	42.33	29.03	37.92	37.78	31.26	42.6	26.4	38.47	20.61
Merged-chr11-6292560-3	chr11	6292047	6293047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252288)	promoter-TSS (NM_001252288)	-11.0	NM_001252288	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	394.14	391.21	251.59	346.8	365.28	210.59	380.23	451.45	166.12
Merged-chr5-99379747-3	chr5	99379235	99380235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-126808.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	356.39	254.81	153.54	355.58	247.72	223.45	305.24	406.79	147.39
Merged-chr9-7250821-3	chr9	7250336	7251336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21678.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	56.06	47.46	53.65	40.48	37.79	64.3	38.02	48.64	45.59
Merged-chr15-66845545-3	chr15	66845020	66846020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-13691.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	77.8	89.39	80.47	86.36	71.38	96.45	53.87	92.41	42.47
Merged-chr18-25241815-3	chr18	25241311	25242311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	72791.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	32.61	17.05	26.82	24.96	22.86	16.08	23.24	13.71	14.99
Merged-chr15-36179692-3	chr15	36179179	36180179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_012031, exon 1 of 19)	5' UTR (NM_012031, exon 1 of 19)	149.0	NM_012031	26942.0	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	12.59	13.82	7.4	18.22	10.73	19.29	13.73	6.19	21.23
Merged-chr7-6362751-3	chr7	6362230	6363230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-578.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	26.89	19.81	27.75	20.92	16.33	32.96	27.46	24.76	16.86
Merged-chr16-91648204-3	chr16	91647693	91648693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019973, intron 1 of 4)	CpG-5863	369.0	NM_178880	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	289.46	239.61	156.32	244.92	197.33	149.5	239.75	202.51	157.38
Merged-chr11-63132941-3	chr11	63132396	63133396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302260)	promoter-TSS (NM_001302260)	93.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	29.75	34.1	26.82	73.54	57.85	63.5	105.62	95.07	64.33
Merged-chrX-105065020-3	chrX	105064522	105065522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015467, intron 4 of 4)	intron (NR_015467, intron 4 of 4)	5102.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	50.91	72.34	40.7	72.19	66.24	58.68	79.21	77.82	59.95
Merged-chr11-48787947-3	chr11	48787442	48788442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12418.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	169.33	161.27	131.34	153.16	104.03	102.08	208.07	168.02	118.04
Merged-chr17-32364500-3	chr17	32363985	32364985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13908.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	24.03	24.88	29.6	26.99	14.0	27.33	44.36	7.96	14.36
Merged-chr8-22136737-2	chr8	22136241	22137241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011848, intron 11 of 15)	RLTR44B|LTR|ERVK	-11674.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	48.05	88.47	37.92	80.29	104.5	55.46	1.06	0.44	2.5
Merged-chr2-36216677-3	chr2	36216184	36217184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-13742.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	109.83	90.77	59.2	70.85	47.12	81.18	181.66	131.77	74.94
Merged-chr4-145300374-3	chr4	145299901	145300901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 2 of 12)	intron (NM_009401, intron 2 of 12)	14746.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	9.72	2.76	6.47	8.77	4.67	7.23	13.73	7.07	8.74
Merged-chr5-64780984-3	chr5	64780476	64781476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22547.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	72.08	84.78	65.67	78.27	62.98	42.6	72.88	72.52	50.59
Merged-chr3-95315758-1	chr3	95315258	95316258	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029789, intron 1 of 10)	intron (NM_029789, intron 1 of 10)	568.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	151.59	165.42	198.87	159.23	171.68	204.16	153.15	120.71	113.04
Merged-chr9-75037658-3	chr9	75037161	75038161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021548)	promoter-TSS (NM_021548)	47.0	NR_152135	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	36.04	36.86	24.97	53.98	28.46	28.94	38.02	20.34	21.23
Merged-chr1-123919825-3	chr1	123919325	123920325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	125734.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	28.6	36.86	34.22	41.83	27.52	41.8	35.91	34.05	29.35
Merged-chr13-110602042-3	chr13	110601550	110602550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207006.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	93.24	105.98	46.25	163.28	132.02	81.99	122.52	124.69	51.21
Merged-chr4-126321731-3	chr4	126321223	126322223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133883)	promoter-TSS (NM_133883)	-20.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	141.3	94.46	66.6	112.68	101.23	109.32	106.67	84.01	63.7
Merged-chr9-98601700-3	chr9	98601188	98602188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025485)	promoter-TSS (NM_025485)	-9.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	26.31	25.8	34.22	24.29	32.19	24.92	43.3	26.97	24.98
Merged-chr10-95291352-3	chr10	95290882	95291882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	32327.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	81.23	82.94	49.02	80.97	57.85	73.14	83.44	87.55	49.96
Merged-chr12-100729199-3	chr12	100728667	100729667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	54.92	64.51	39.77	72.19	59.25	62.7	41.19	52.18	40.59
Merged-chr6-53571942-3	chr6	53571444	53572444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-1430.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	114.41	113.35	110.99	114.03	79.77	100.47	107.73	106.12	93.05
Merged-chr7-133709158-3	chr7	133708614	133709614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025392)	promoter-TSS (NM_025392)	181.0	NM_009479	22276.0	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	113.84	128.56	106.37	134.27	107.76	147.9	148.92	135.75	99.92
Merged-chr2-170322254-3	chr2	170321740	170322740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34121.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	87.52	113.81	85.1	105.93	99.37	98.06	101.39	114.96	63.08
Merged-chr17-84273049-3	chr17	84272502	84273502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-85055.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	114.98	131.78	82.32	155.86	140.89	107.71	127.8	161.83	63.7
Merged-chr2-166710053-3	chr2	166709561	166710561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	3771.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	157.31	130.4	114.69	148.44	80.24	119.76	147.87	164.04	74.94
Merged-chrX-134601118-3	chrX	134600625	134601625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313717)	promoter-TSS (NM_001313717)	-54.0	NM_001313716	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	338.66	311.03	182.22	402.81	335.89	208.18	270.38	330.3	133.02
Merged-chr4-149155938-3	chr4	149155452	149156452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10130.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	26.89	17.05	24.05	28.34	18.66	22.51	25.35	26.97	26.85
Merged-chr5-64716762-3	chr5	64716243	64717243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86780.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	38.33	26.26	22.2	39.13	18.66	32.96	29.57	22.55	19.36
Merged-chr19-21778336-3	chr19	21777850	21778850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031997)	promoter-TSS (NM_031997)	10.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	90.38	74.65	111.92	93.11	81.64	92.44	96.11	58.81	48.09
Merged-chr3-152886985-1	chr3	152886485	152887485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	95222.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	9.15	2.3	9.25	6.75	2.33	1.61	3.17	3.1	1.25
Merged-chr12-81860918-3	chr12	81860425	81861425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018814, intron 1 of 35)	CpG	895.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	51.48	50.23	24.05	53.98	33.12	23.31	54.92	26.09	24.36
Merged-chr5-140392847-3	chr5	140392304	140393304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3496.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	163.04	161.74	119.32	163.28	138.09	160.76	118.29	159.18	108.04
Merged-chrUn_JH584304-39660-1	chrUn_JH584304	39160	40160	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20029.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	89.78	49.52	0.0
Merged-chr13-66933014-5	chr13	66932523	66933523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	49.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	199.65	204.13	158.17	186.9	202.93	199.34	224.97	174.21	119.91
Merged-chr3-89785520-3	chr3	89784988	89785988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11879.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	40.62	29.49	23.12	42.51	29.86	26.53	57.03	48.64	21.86
Merged-chr4-107253714-3	chr4	107253218	107254218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355459)	promoter-TSS (NM_001355459)	26.0	NM_001355460	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	92.1	51.15	85.1	77.59	39.65	75.56	102.45	63.23	42.47
Merged-chr6-83659514-2	chr6	83659018	83660018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3402.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	56.06	39.63	51.8	72.87	71.84	58.68	33.8	11.94	10.62
Merged-chr19-8741572-6	chr19	8741076	8742076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019829)	promoter-TSS (NM_019829)	152.0	NM_001167799	56389.0	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	422.75	312.87	246.04	323.19	242.58	233.1	295.73	275.03	177.37
Merged-chr16-50551104-3	chr16	50550592	50551592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 4 of 5)	intron (NR_040379, intron 4 of 5)	22590.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	98.39	106.9	98.97	89.06	102.17	87.61	61.26	77.38	51.84
Merged-chr5-30960342-3	chr5	30959834	30960834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-7.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	381.56	345.13	258.99	278.66	268.71	246.76	305.24	374.07	214.21
Merged-chr2-83725533-1	chr2	83725033	83726033	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1136.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	45.76	66.35	24.05	50.6	62.51	41.8	71.82	108.77	61.83
Merged-chr2-18767234-3	chr2	18766723	18767723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6361.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	205.37	243.75	191.47	171.38	138.09	124.59	161.6	181.73	130.53
Merged-chr11-117830618-3	chr11	117830126	117831126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4612.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	463.94	325.31	276.56	444.64	241.18	220.24	370.72	412.1	170.5
Merged-chr17-27623536-3	chr17	27623027	27624027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019837)	promoter-TSS (NM_019837)	-75.0	NM_019837	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	190.49	106.9	146.14	172.05	152.08	180.05	171.1	130.44	73.69
Merged-chr5-121386542-3	chr5	121386068	121387068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-953.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	312.34	240.99	181.29	257.74	166.08	143.88	179.55	238.77	118.66
Merged-chr9-119352232-3	chr9	119351726	119352726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5155.0	NM_001199568	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	2.86	1.38	0.0	3.37	3.27	4.82	1.06	1.77	3.12
Merged-chr1-87651612-3	chr1	87651118	87652118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	MTC|LTR|ERVL-MaLR	31306.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	173.33	174.64	121.17	156.53	89.57	160.76	111.96	152.55	109.29
Merged-chr18-64518745-3	chr18	64518245	64519245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2188.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	10.3	9.22	7.4	8.1	7.93	3.22	9.51	4.42	3.75
Merged-chr9-44113600-3	chr9	44113091	44114091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153762)	promoter-TSS (NM_153762)	-540.0	NM_153762	213211.0	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	45.19	35.02	24.05	36.43	21.93	40.99	38.02	22.55	16.24
Merged-chr5-36695833-5	chr5	36695351	36696351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081232, intron 1 of 8)	CpG	170.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	196.79	164.5	183.14	209.84	152.08	171.21	211.24	157.41	116.16
Merged-chr1-24686435-3	chr1	24685938	24686938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 2 of 15)	MIR|SINE|MIR	7520.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	72.08	76.03	37.92	73.54	62.98	53.85	64.43	66.77	51.84
Merged-chr18-62227777-3	chr18	62227296	62228296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47696.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	62.35	72.34	26.82	60.05	29.86	28.94	39.08	43.77	56.83
Merged-chr4-3656444-3	chr4	3655961	3656961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040643)	promoter-TSS (NR_040643)	-45.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	105.26	106.9	62.9	121.45	77.91	64.3	119.35	115.85	95.55
Merged-chr7-25107271-3	chr7	25106764	25107764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	L1MA6|LINE|L1	-10089.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	58.35	45.16	35.15	40.48	33.59	42.6	54.92	43.77	31.23
Merged-chr13-112660685-3	chr13	112660192	112661192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178746)	promoter-TSS (NM_178746)	-74.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	61.21	50.69	28.67	78.27	63.45	44.21	128.85	114.96	45.59
Merged-chr14-122068098-3	chr14	122067591	122068591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33417.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	9.15	6.45	7.4	12.14	6.06	4.82	6.34	1.33	6.25
Merged-chr6-145340077-3	chr6	145339534	145340534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47591.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	346.66	266.33	137.82	309.02	326.09	159.95	241.87	307.31	118.04
Merged-chr14-62838096-1	chr14	62837596	62838596	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106174)	TTS (NR_106174)	375.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	160.18	181.09	172.04	128.87	101.23	159.95	176.38	179.52	129.28
Merged-chrX-139570286-3	chrX	139569788	139570788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254761, intron 1 of 6)	L2c|LINE|L2	6948.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	15.45	7.37	10.17	9.45	8.4	9.65	9.51	13.71	14.36
Merged-chr11-83045739-3	chr11	83045236	83046236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5203.0	NR_073524	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	90.38	73.26	49.95	66.12	73.71	81.99	53.87	46.43	35.6
Merged-chr9-90269071-3	chr9	90268587	90269587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1682.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	82.38	89.39	70.3	82.32	64.84	85.2	124.63	122.48	78.69
Merged-chr4-86676867-1	chr4	86676367	86677367	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-6808.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	3.43	4.15	1.85	6.07	1.87	7.23	8.45	7.52	11.24
Merged-chr9-22468324-3	chr9	22467816	22468816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018739)	promoter-TSS (NM_018739)	40.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	114.41	78.33	98.97	115.38	97.03	131.02	99.28	86.66	59.95
Merged-chr14-8173162-3	chr14	8172687	8173687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-195.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	259.14	346.97	169.27	311.04	394.2	261.23	312.63	445.7	151.14
Merged-chr7-75848266-3	chr7	75847763	75848763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182782)	promoter-TSS (NM_182782)	-75.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	41.76	88.93	48.1	81.64	87.24	44.21	72.88	52.18	40.59
Merged-chr11-87031048-3	chr11	87030562	87031562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37300.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	12.59	11.98	8.32	66.12	55.51	49.03	35.91	44.22	32.48
Merged-chr19-33589776-3	chr19	33589263	33590263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013770, intron 1 of 10)	intron (NM_001013770, intron 1 of 10)	548.0	NM_001013770	381236.0	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	29.75	27.65	22.2	33.06	34.06	12.86	35.91	42.45	8.74
Merged-chr5-17842254-3	chr5	17841754	17842754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-6358.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	32.04	24.88	20.35	43.18	26.12	12.86	42.25	38.91	24.98
Merged-chr6-122863057-3	chr6	122862550	122863550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6893.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	57.78	72.34	43.47	75.57	56.91	69.93	72.88	56.16	46.22
Merged-chr10-56106829-3	chr10	56106341	56107341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163833)	promoter-TSS (NM_001163833)	-76.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	82.38	94.0	24.97	82.32	121.76	59.48	89.78	137.07	42.47
Merged-chr2-21179369-3	chr2	21178863	21179863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26002.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	16.59	20.74	11.1	20.92	14.46	19.29	16.9	15.03	20.61
Merged-chr11-77348244-3	chr11	77347727	77348727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291190)	promoter-TSS (NM_001291190)	-53.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	52.06	52.99	57.35	64.1	54.58	38.58	78.16	88.43	52.46
Merged-chr13-47106011-3	chr13	47105513	47106513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025900, intron 1 of 10)	CpG	208.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	319.78	222.1	261.76	269.21	229.52	254.8	284.11	196.32	189.23
Merged-chr7-67451604-3	chr7	67451103	67452103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78745.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	68.07	76.95	59.2	60.05	53.18	73.95	65.48	84.01	81.81
Merged-chr12-41350024-3	chr12	41349539	41350539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	136018.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	52.06	70.04	37.92	38.46	58.78	53.85	49.64	63.23	46.84
Merged-chr9-57073135-2	chr9	57072637	57073637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110351, intron 1 of 21)	CpG	1097.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	114.41	120.73	175.74	110.65	107.3	148.7	97.17	118.94	88.06
Merged-chr19-10843604-3	chr19	10843091	10844091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	1047.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	280.31	257.58	251.59	298.9	243.98	221.85	364.38	382.03	226.7
Merged-chr5-92509106-3	chr5	92508589	92509589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3432.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	90.96	108.75	59.2	95.81	69.98	98.87	114.07	140.61	74.94
Merged-chr14-34311252-3	chr14	34310752	34311752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029389)	promoter-TSS (NM_029389)	525.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	146.45	169.57	177.59	170.03	165.14	163.17	195.39	157.85	124.28
Merged-chr3-27209913-3	chr3	27209411	27210411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	26907.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	261.43	259.88	127.64	316.44	275.71	202.55	282.0	378.94	149.89
Merged-chr2-167588912-3	chr2	167588406	167589406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43099.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	380.42	317.02	310.78	331.29	274.77	241.14	322.14	343.56	191.11
Merged-chr2-85047885-3	chr2	85047385	85048385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136081)	TTS (NM_001136081)	-2575.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	74.37	37.78	32.37	76.92	45.25	69.93	73.93	68.09	48.71
Merged-chr8-84872184-3	chr8	84871690	84872690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-68.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	96.68	87.55	64.75	91.76	96.57	88.42	90.83	85.78	50.59
Merged-chr17-36020852-3	chr17	36020352	36021352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008207)	promoter-TSS (NM_008207)	-292.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	77.23	84.78	83.25	102.56	53.65	90.02	121.46	126.02	64.95
Merged-chr17-48409896-3	chr17	48409401	48410401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-81.0	NM_010913	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	182.49	237.3	167.42	160.58	186.6	200.14	167.93	187.48	113.04
Merged-chr11-95843161-3	chr11	95842667	95843667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163464)	promoter-TSS (NM_001163464)	-78.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	154.45	125.33	118.39	139.67	105.43	127.0	203.84	206.05	84.94
Merged-chr1-30873427-1	chr1	30872927	30873927	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10171.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	430.18	303.2	371.83	453.41	294.83	317.5	437.26	187.04	236.07
Merged-chr7-126976117-3	chr7	126975608	126976608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	194.0	NM_001347656	52858.0	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	238.55	189.84	156.32	200.39	167.01	188.89	232.36	201.63	143.02
Merged-chr1-86154743-3	chr1	86154262	86155262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-18.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	55.49	65.43	61.05	56.0	55.51	64.3	76.05	74.73	32.48
Merged-chr18-65505137-3	chr18	65504616	65505616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	74119.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	173.33	213.8	155.39	209.84	203.86	147.9	51.75	54.83	38.1
Merged-chr13-119409300-6	chr13	119408745	119409745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008710)	promoter-TSS (NM_008710)	12.0	NM_001308506	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	34.9	42.39	27.75	45.21	44.78	47.42	57.03	51.73	24.98
Merged-chr10-126919254-3	chr10	126918756	126919756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17885.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	11.44	2.3	9.25	14.84	3.27	0.0	3.17	1.33	4.37
Merged-chr17-78400749-3	chr17	78400265	78401265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285946, exon 5 of 7)	exon (NM_001285946, exon 5 of 7)	17387.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	46.91	54.83	37.0	62.75	76.04	95.65	51.75	44.22	34.97
Merged-chr2-52895124-3	chr2	52894621	52895621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	37253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	93.82	94.0	84.17	118.08	105.43	96.45	108.79	108.33	84.31
Merged-chr15-82147151-3	chr15	82146653	82147653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033218)	promoter-TSS (NM_033218)	-116.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	175.62	105.52	72.15	147.76	138.09	106.1	157.37	172.45	42.47
Merged-chr10-80939877-3	chr10	80939383	80940383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9792.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	38.9	22.58	11.1	54.65	39.19	32.15	36.97	35.82	9.37
Merged-chr14-75833912-1	chr14	75833412	75834412	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	11052.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	214.52	173.25	107.29	209.16	121.29	159.95	176.38	187.92	116.16
Merged-chr14-77033502-3	chr14	77033002	77034002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172488, intron 4 of 7)	intron (NM_172488, intron 4 of 7)	3115.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	160.75	203.21	95.27	138.99	103.1	90.83	173.21	241.42	96.18
Merged-chr5-110230990-3	chr5	110230476	110231476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253814)	promoter-TSS (NM_001253814)	-28.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	80.66	75.57	119.32	82.99	99.83	118.16	106.67	81.8	88.06
Merged-chr6-125422488-3	chr6	125421979	125422979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-41975.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	14.87	11.98	3.7	23.62	7.0	12.06	25.35	16.36	13.12
Merged-chr10-99108150-3	chr10	99107651	99108651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	16.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	59.49	39.17	26.82	55.33	42.92	45.01	61.26	55.71	36.85
Merged-chr11-101965771-3	chr11	101965266	101966266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024449, intron 1 of 1)	intron (NM_024449, intron 1 of 1)	1249.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	52.63	17.05	7.4	49.93	10.73	9.65	36.97	25.2	16.24
Merged-chr14-121381977-3	chr14	121381482	121382482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2752.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	24.03	32.72	25.9	27.66	24.26	40.99	25.35	25.2	26.85
Merged-chr17-73034615-3	chr17	73034117	73035117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73368.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	239.69	215.65	150.77	242.22	257.51	178.44	228.14	312.17	150.51
Merged-chr5-74535595-3	chr5	74535120	74536120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001159574, exon 1 of 16)	5' UTR (NM_001159574, exon 1 of 16)	138.0	NM_001159574	66899.0	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	243.69	340.52	213.66	192.29	257.51	207.38	245.04	231.25	149.89
Merged-chr9-77825492-1	chr9	77824992	77825992	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70957.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	15.45	24.88	22.2	41.16	34.52	28.13	90.83	63.67	54.96
Merged-chr5-104860141-1	chr5	104859641	104860641	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039231)	promoter-TSS (NM_001039231)	-73.0	NM_001039231	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	3.43	3.69	1.85	4.05	2.8	0.0	125.69	141.49	80.56
Merged-chr5-140704512-2	chr5	140704004	140705004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-507.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	61.78	92.16	91.57	95.14	56.45	86.01	100.34	99.05	40.59
Merged-chr5-18007241-3	chr5	18006746	18007746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44676.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	68.65	64.51	41.62	72.19	65.31	49.03	63.37	76.49	43.09
Merged-chr2-60210519-3	chr2	60210005	60211005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	569.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	405.59	324.39	223.84	414.28	252.85	175.23	295.73	232.14	154.88
Merged-chr10-10120686-3	chr10	10120169	10121169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219629.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	37.18	33.18	22.2	32.39	49.45	37.78	48.58	23.43	14.99
Merged-chr2-69789620-3	chr2	69789134	69790134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028521)	promoter-TSS (NM_028521)	-103.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	187.63	251.13	131.34	168.68	216.46	109.32	172.16	234.79	108.04
Merged-chr8-104233175-3	chr8	104232694	104233694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 5 of 8)	intron (NR_045642, intron 5 of 8)	15364.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	50.34	42.85	31.45	46.56	41.99	31.35	24.29	22.11	16.24
Merged-chr3-103968485-3	chr3	103967983	103968983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030676)	promoter-TSS (NR_030676)	-167.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	152.17	145.61	145.22	126.85	135.75	143.07	130.97	134.86	90.56
Merged-chr11-116198899-3	chr11	116198415	116199415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	60.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	405.01	334.53	263.61	414.28	353.15	246.76	379.17	379.38	183.61
Merged-chr16-21596605-3	chr16	21596091	21597091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98074.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	44.05	27.65	17.57	103.23	70.91	65.11	55.98	33.16	14.36
Merged-chr11-69079053-3	chr11	69078549	69079549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5623.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	46.34	32.25	12.95	30.36	19.13	36.17	38.02	37.58	29.98
Merged-chr19-46328399-3	chr19	46327898	46328898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133694, exon 1 of 4)	5' UTR (NM_133694, exon 1 of 4)	214.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	76.08	48.84	53.65	51.95	37.32	57.07	49.64	65.88	47.46
Merged-chr11-53350763-3	chr11	53350255	53351255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033565)	promoter-TSS (NM_033565)	-12.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	627.54	423.46	343.16	603.87	394.67	348.84	479.51	301.12	218.58
Merged-chr9-20521447-3	chr9	20520947	20521947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082485)	promoter-TSS (NM_001082485)	-28.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	105.83	108.28	99.89	82.99	85.37	69.93	96.11	84.01	59.33
Merged-chr9-88599623-3	chr9	88599130	88600130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040766)	promoter-TSS (NR_040766)	-387.0	NR_040766	320692.0	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	14.87	11.52	12.95	24.29	20.99	19.29	22.18	11.94	8.74
Merged-chr15-59648502-3	chr15	59647945	59648945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-209.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	368.97	321.17	320.03	302.27	306.5	262.04	308.41	325.88	211.71
Merged-chr6-129713801-3	chr6	129713295	129714295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	3337.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	21.17	19.35	22.2	21.59	13.06	27.33	31.69	30.07	38.72
Merged-chr16-36477125-3	chr16	36476638	36477638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21746.0	NM_025288	20863.0	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	29.17	27.19	12.02	45.88	29.39	14.47	47.53	28.3	13.74
Merged-chr12-85947373-3	chr12	85946868	85947868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	122418.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	46.91	46.54	56.42	66.12	79.77	69.13	66.54	57.04	38.1
Merged-chr4-15958277-5	chr4	15957726	15958726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 1 of 15)	CpG	259.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	291.18	297.21	254.36	283.38	354.08	207.38	271.44	205.17	143.02
Merged-chr18-56490858-3	chr18	56490364	56491364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360917, intron 11 of 13)	intron (NM_001360917, intron 11 of 13)	-47275.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	30.89	41.47	40.7	24.96	31.26	48.23	59.15	49.52	31.23
Merged-chr18-39835866-3	chr18	39835334	39836334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62337.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	34.32	28.57	13.87	40.48	30.32	49.03	39.08	26.97	24.98
Merged-chr14-75180736-3	chr14	75180219	75181219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	44294.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	181.34	183.85	85.1	180.82	140.89	134.23	162.65	183.94	109.29
Merged-chr4-45407782-3	chr4	45407275	45408275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009949, intron 1 of 2)	intron (NM_001009949, intron 1 of 2)	991.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	116.13	123.49	82.32	138.32	139.02	101.28	216.52	250.71	83.69
Merged-chr5-24586747-3	chr5	24586239	24587239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133913)	promoter-TSS (NM_133913)	-11.0	NM_133913	100910.0	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|Gm42230|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	30.89	36.4	47.17	29.69	41.05	45.82	33.8	32.28	20.61
Merged-chr5-99250027-3	chr5	99249552	99250552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2875.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	323.21	352.5	149.84	284.73	291.57	176.83	296.79	260.44	143.02
Merged-chr11-45851906-3	chr11	45851409	45852409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346760)	promoter-TSS (NM_001346760)	-55.0	NM_001346760	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	225.96	153.9	236.79	192.29	121.29	175.23	265.1	101.26	128.03
Merged-chr7-30957510-3	chr7	30956984	30957984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-681.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	147.59	106.9	118.39	149.11	121.76	143.88	204.9	122.92	101.17
Merged-chr9-107602302-3	chr9	107601811	107602811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042779, intron 9 of 19)	intron (NM_001042779, intron 9 of 19)	3091.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	13.73	13.82	11.1	17.54	9.8	6.43	7.39	7.52	5.0
Merged-chr4-124708687-3	chr4	124708176	124709176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010213)	TTS (NM_010213)	-6185.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	127.57	141.92	135.97	132.92	110.56	160.76	136.25	169.35	113.04
Merged-chr12-21417715-3	chr12	21417206	21418206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011739)	promoter-TSS (NM_011739)	-270.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	113.84	74.19	57.35	70.85	86.77	49.83	109.84	62.79	60.58
Merged-chr4-3626845-3	chr4	3626348	3627348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-29658.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	215.09	188.0	118.39	215.91	167.94	156.74	184.83	191.02	93.68
Merged-chr2-50494241-3	chr2	50493752	50494752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139227.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	13.16	10.14	3.7	8.77	4.2	5.63	2.11	3.98	6.87
Merged-chr17-10319807-3	chr17	10319293	10320293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	-126.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	321.49	248.36	236.79	295.53	203.86	222.65	249.26	179.08	150.51
Merged-chr4-132808282-3	chr4	132807804	132808804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11940.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	136.72	120.73	109.14	109.98	64.84	68.32	113.01	138.4	85.56
Merged-chr2-119034820-3	chr2	119034329	119035329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173450)	promoter-TSS (NM_173450)	39.0	NM_173450	271842.0	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	88.67	90.31	59.2	91.09	106.36	71.54	84.49	76.49	58.71
Merged-chr16-50779588-3	chr16	50779090	50780090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3819.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	33.18	29.49	20.35	37.78	26.59	38.58	26.4	37.14	20.61
Merged-chr10-66953435-3	chr10	66952942	66953942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-33058.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	93.82	77.87	50.87	96.48	74.64	43.4	124.63	133.09	56.21
Merged-chr15-3270639-3	chr15	3270144	3271144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-123.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	81.23	100.45	67.52	74.22	55.51	109.32	119.35	95.07	79.32
Merged-chr13-75845999-3	chr13	75845507	75846507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6121.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	57.21	60.36	52.72	40.48	31.26	37.78	26.4	30.95	30.6
Merged-chr13-26792045-2	chr13	26791542	26792542	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21877.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	5.72	6.45	11.1	7.42	2.33	16.08	11.62	10.17	19.36
Merged-chr4-139616854-3	chr4	139616327	139617327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183148, exon 12 of 12)	3' UTR (NM_183148, exon 12 of 12)	-6067.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	78.37	99.53	99.89	66.12	65.78	138.25	95.06	100.37	76.19
Merged-chr4-102625160-3	chr4	102624659	102625659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35316.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	215.66	235.92	125.79	187.57	160.01	145.49	181.66	254.25	131.78
Merged-chr9-110657810-3	chr9	110657313	110658313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	1310.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	132.14	167.73	128.57	116.05	97.5	99.67	140.47	243.19	115.54
Merged-chr7-48998841-3	chr7	48998307	48999307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39734.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	68.65	68.66	43.47	98.51	56.45	46.62	76.05	76.94	42.47
Merged-chr2-102672133-1	chr2	102671633	102672633	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	MTC|LTR|ERVL-MaLR	13444.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.86	4.61	5.55	24.29	19.59	22.51	1.06	1.77	3.75
Merged-chr5-139345277-3	chr5	139344776	139345776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197980)	promoter-TSS (NM_197980)	-110.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	38.33	26.73	47.17	29.01	17.26	37.78	30.63	30.07	26.23
Merged-chr12-111691422-2	chr12	111690925	111691925	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13320.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	5.15	3.23	6.47	28.34	13.06	28.13	25.35	30.51	23.73
Merged-chr7-121074587-3	chr7	121074079	121075079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-49.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	227.68	291.68	162.79	253.69	316.29	221.04	262.99	305.54	177.99
Merged-chr11-16978477-3	chr11	16977976	16978976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27066.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	79.52	74.65	45.32	59.38	59.71	60.28	50.7	50.85	58.08
Merged-chr11-76494670-3	chr11	76494170	76495170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-175.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	167.61	134.55	139.67	176.78	152.08	152.72	144.7	130.88	89.31
Merged-chr4-130800727-3	chr4	130800234	130801234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	8197.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	488.53	331.76	232.16	450.71	262.18	260.43	396.07	426.25	194.85
Merged-chr5-142909603-2	chr5	142909114	142910114	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2860.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	136.15	140.54	174.82	121.45	80.71	156.74	175.33	202.51	140.52
Merged-chr8-95888475-3	chr8	95887965	95888965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010325)	promoter-TSS (NM_010325)	-100.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	36.61	42.85	37.0	34.41	37.79	40.19	47.53	41.12	27.48
Merged-chr2-152112109-3	chr2	152111599	152112599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029688)	TTS (NM_029688)	6575.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	2.86	5.07	5.55	4.05	1.4	8.04	5.28	2.65	1.87
Merged-chr1-180393257-3	chr1	180392737	180393737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-62688.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	64.07	44.24	56.42	57.35	33.12	34.56	43.3	51.73	43.72
Merged-chr2-93214395-3	chr2	93213890	93214890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	26842.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	21.74	10.14	1.85	10.12	7.0	1.61	12.67	5.75	5.62
Merged-chr9-99074659-3	chr9	99074171	99075171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 8 of 23)	B4A|SINE|B4	-38981.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	33.18	31.33	21.27	43.18	43.39	51.44	42.25	33.6	32.48
Merged-chr8-94037136-3	chr8	94036622	94037622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177767)	promoter-TSS (NM_177767)	-76.0	NM_177767	270086.0	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	66.36	80.64	83.25	82.32	64.84	78.77	84.49	76.49	71.2
Merged-chr2-118388504-3	chr2	118388002	118389002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177806)	promoter-TSS (NM_001177806)	-115.0	NM_001355383	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	165.32	142.38	112.84	134.94	127.82	86.81	188.0	175.98	90.56
Merged-chr19-47220420-1	chr19	47219920	47220920	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	(CACAT)n|Simple_repeat|Simple_repeat	-8423.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	4.58	2.76	1.85	2.02	6.06	3.22	14.79	7.07	5.62
Merged-chr1-172499853-3	chr1	172499339	172500339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	-407.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	34.32	30.41	26.82	50.6	33.59	35.37	44.36	52.18	18.11
Merged-chr7-141392158-3	chr7	141391655	141392655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	-5.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	87.52	93.08	81.4	125.5	157.21	126.19	95.06	142.38	68.7
Merged-chr11-3153873-3	chr11	3153352	3154352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	intron (NM_030207, intron 13 of 32)	29831.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	60.07	88.01	71.22	99.86	97.03	159.15	17.96	16.36	159.25
Merged-chr10-111996620-3	chr10	111996125	111997125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	639.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	143.01	179.71	92.5	159.91	184.27	118.96	104.56	154.76	66.2
Merged-chr1-36073370-3	chr1	36072871	36073871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	MLT1A1|LTR|ERVL-MaLR	4971.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	134.43	106.9	70.3	228.73	139.49	124.59	146.81	183.5	66.82
Merged-chr1-149940443-3	chr1	149939974	149940974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-18035.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	57.78	59.9	42.55	44.53	44.32	57.87	54.92	53.06	52.46
Merged-chr11-97362268-3	chr11	97361775	97362775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138657)	promoter-TSS (NM_138657)	-276.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	248.27	148.83	202.56	259.77	149.28	134.23	249.26	152.99	119.28
Merged-chr15-83171905-3	chr15	83171402	83172402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	CpG	306.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	395.29	323.47	203.49	352.2	335.42	203.36	264.05	314.38	169.25
Merged-chr3-109254125-3	chr3	109253625	109254625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86558.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	94.39	111.51	74.0	82.99	104.03	63.5	86.61	99.49	58.71
Merged-chr7-139388912-3	chr7	139388428	139389428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-181.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	398.72	233.16	248.81	309.7	189.4	155.93	341.15	219.31	119.91
Merged-chr2-153350866-6	chr2	153350376	153351376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	4737.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	149.88	171.41	137.82	193.64	114.76	126.19	171.1	173.33	94.3
Merged-chr11-84870147-3	chr11	84869656	84870656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	151.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	401.01	421.16	357.96	369.75	425.92	373.76	304.18	370.98	310.39
Merged-chrX-121497393-1	chrX	121496893	121497893	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	899992.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	18.31	24.42	3.7	21.59	24.72	13.66	1.06	1.77	1.25
Merged-chr2-174473072-3	chr2	174472576	174473576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025531)	promoter-TSS (NM_025531)	-135.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	266.58	235.92	197.02	228.05	209.46	202.55	216.52	215.78	119.91
Merged-chr12-16895495-3	chr12	16894962	16895962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	CpG	484.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	227.11	212.42	217.36	228.05	153.01	189.69	214.41	146.36	143.02
Merged-chr16-91452375-2	chr16	91451890	91452890	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12714.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	161.32	149.29	89.72	139.67	118.49	111.73	140.47	170.68	105.55
Merged-chr17-26514876-2	chr17	26514366	26515366	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6394.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.58	6.91	9.25	8.77	7.46	4.02	7.39	6.63	5.0
Merged-chr4-114987289-3	chr4	114986793	114987793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025647)	promoter-TSS (NM_025647)	-65.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	267.72	281.54	241.41	232.78	235.12	281.33	252.43	272.82	179.86
Merged-chr2-101781485-3	chr2	101780978	101781978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	16229.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	112.69	132.71	69.37	100.53	58.31	83.59	106.67	120.71	104.3
Merged-chr8-70549893-1	chr8	70549393	70550393	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	10218.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.58	5.53	6.47	69.5	49.45	50.64	6.34	3.1	4.37
Merged-chr13-23531043-3	chr13	23530532	23531532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-12.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	363.25	383.37	242.34	285.41	252.85	286.15	299.96	395.3	242.32
Merged-chr17-84108146-3	chr17	84107646	84108646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29486.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	260.28	211.5	123.94	281.36	226.26	172.81	193.28	266.63	128.65
Merged-chr8-3279573-3	chr8	3279065	3280065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010568)	promoter-TSS (NM_010568)	52.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	93.82	85.71	73.07	55.33	69.98	88.42	104.56	83.57	49.34
Merged-chr5-148554421-1	chr5	148553921	148554921	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1633.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	22.31	14.28	12.95	22.94	20.99	26.53	68.65	66.77	46.84
Merged-chr1-131021161-3	chr1	131020655	131021655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 2 of 4)	intron (NM_010548, intron 2 of 4)	1310.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	64.64	60.36	52.72	54.65	40.12	24.11	91.89	95.95	41.84
Merged-chr5-117116109-3	chr5	117115581	117116581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178622)	promoter-TSS (NM_178622)	-88.0	NM_178622	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	176.76	155.28	141.52	184.87	125.49	172.01	185.89	126.02	80.56
Merged-chr6-83044971-3	chr6	83044456	83045456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-4755.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	68.07	61.75	72.15	75.57	56.45	77.97	67.6	60.58	44.97
Merged-chr2-35732220-3	chr2	35731720	35732720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35488.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	82.95	68.2	58.27	60.05	34.99	80.38	94.0	57.04	44.97
Merged-chr4-53133598-3	chr4	53133089	53134089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	26306.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	177.34	152.06	100.82	159.91	127.36	159.15	138.36	149.01	94.93
Merged-chr10-8535627-3	chr10	8535130	8536130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16805.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	11.44	8.75	12.95	10.8	9.8	12.06	12.67	3.98	10.62
Merged-chr11-78984958-3	chr11	78984459	78985459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159301)	promoter-TSS (NM_001159301)	-35.0	NM_010708	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	133.29	116.58	76.77	151.81	93.77	111.73	136.25	137.51	71.82
Merged-chr3-116594906-3	chr3	116594398	116595398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289571)	promoter-TSS (NM_001289571)	-11.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	116.7	135.01	119.32	100.53	87.24	86.01	106.67	137.51	76.19
Merged-chr11-53795381-3	chr11	53794871	53795871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24898.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	165.32	117.5	87.87	159.91	92.37	162.37	177.44	136.19	85.56
Merged-chr17-34850283-3	chr17	34849756	34850756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	-52.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	118.99	89.85	98.05	85.01	65.31	65.91	78.16	90.2	73.69
Merged-chr9-111046397-3	chr9	111045894	111046894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	10850.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	49.77	44.24	54.57	41.83	21.93	49.83	51.75	39.35	31.85
Merged-chr2-70978485-3	chr2	70977992	70978992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	39882.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	165.9	149.29	86.95	216.58	231.85	114.14	184.83	260.88	132.4
Merged-chr13-82949757-3	chr13	82949257	82950257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251424.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	8.58	11.52	7.4	14.17	11.2	5.63	9.51	12.38	8.74
Merged-chr17-53566894-3	chr17	53566409	53567409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020005)	promoter-TSS (NM_020005)	-62.0	NM_020005	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	137.29	71.42	84.17	110.65	58.31	66.71	117.24	83.13	84.94
Merged-chr13-37337402-3	chr13	37336886	37337886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7959.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	132.72	108.28	74.0	104.58	77.91	76.36	104.56	117.17	79.32
Merged-chr12-76533699-5	chr12	76533183	76534183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039597)	promoter-TSS (NR_039597)	123.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	180.77	159.89	183.14	132.92	125.96	147.9	177.44	149.45	108.67
Merged-chr17-28085131-3	chr17	28084626	28085626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4487.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	8.58	8.75	5.55	11.47	2.33	12.06	41.19	35.82	8.74
Merged-chr13-91460963-3	chr13	91460444	91461444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-153.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	110.98	58.06	74.0	78.94	51.78	65.11	46.47	25.65	31.23
Merged-chr11-93996815-3	chr11	93996278	93997278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027569, intron 1 of 28)	intron (NM_027569, intron 1 of 28)	687.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	463.94	453.87	406.05	503.34	495.43	392.25	430.92	543.42	247.94
Merged-chr2-32882806-3	chr2	32882277	32883277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	6643.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	12.01	6.45	8.32	51.95	20.06	48.23	20.07	15.92	13.74
Merged-chr17-21650606-3	chr17	21650101	21651101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-10.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	107.55	128.56	78.62	101.21	112.43	74.75	134.14	137.51	69.32
Merged-chr10-25318579-3	chr10	25318080	25319080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19417.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	84.66	90.31	49.95	95.81	107.3	86.01	72.88	91.97	63.08
Merged-chr4-150583699-3	chr4	150583202	150584202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	68472.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	163.04	170.95	96.2	169.35	180.54	93.24	165.82	203.84	79.32
Merged-chr2-152406272-3	chr2	152405765	152406765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8219.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	5.15	4.61	12.95	6.07	6.53	1.61	4.22	2.21	6.25
Merged-chr6-113714504-3	chr6	113714012	113715012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3180.0	NR_138135	58991.0	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	33.75	34.56	16.65	58.03	41.05	40.99	43.3	35.82	18.74
Merged-chr15-73423901-3	chr15	73423398	73424398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-707.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	214.52	302.27	197.02	171.38	233.72	194.52	242.92	305.1	158.63
Merged-chr11-6416684-3	chr11	6416188	6417188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008907, intron 1 of 4)	intron (NM_008907, intron 1 of 4)	818.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	233.97	231.31	184.99	190.95	176.81	170.4	170.05	165.81	146.76
Merged-chr6-71493924-3	chr6	71493439	71494439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308303)	promoter-TSS (NM_001308303)	62.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	291.18	274.63	241.41	289.45	256.11	240.33	265.1	268.4	209.22
Merged-chr9-108853073-3	chr9	108852585	108853585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	-958.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	205.94	184.31	115.62	219.28	181.47	205.77	323.19	373.63	128.65
Merged-chr7-30169829-3	chr7	30169341	30170341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357557)	promoter-TSS (NM_001357557)	-81.0	NM_001033540	330503.0	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	78.94	64.97	99.89	60.05	65.78	96.45	118.29	107.89	74.94
Merged-chr12-111559835-3	chr12	111559317	111560317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	14585.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	41.19	24.42	22.2	22.27	22.86	24.11	41.19	33.16	19.98
Merged-chr14-67188944-3	chr14	67188434	67189434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44358.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	59.49	82.94	57.35	70.17	79.31	90.83	68.65	84.9	41.22
Merged-chr7-31002847-3	chr7	31002343	31003343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20922.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	21.74	28.11	39.77	49.25	41.52	49.03	39.08	25.65	41.22
Merged-chr4-59864088-3	chr4	59863594	59864594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50962.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	62.35	58.98	37.0	54.65	39.65	49.83	38.02	31.84	35.6
Merged-chr1-39367822-3	chr1	39367350	39368350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252218)	promoter-TSS (NM_001252218)	-1.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	140.15	133.17	142.44	128.2	123.16	123.78	122.52	103.91	66.2
Merged-chr6-124830082-3	chr6	124829588	124830588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-88.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	244.84	174.64	124.87	180.15	221.59	149.5	215.46	275.47	106.17
Merged-chr1-155096871-3	chr1	155096358	155097358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2778.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	140.73	105.06	37.0	103.23	97.5	94.04	89.78	96.39	77.44
Merged-chr11-97533274-3	chr11	97532767	97533767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 10 of 19)	intron (NM_018873, intron 10 of 19)	-32927.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	10.3	3.23	12.95	2.7	2.8	3.22	3.17	5.31	6.25
Merged-chr5-125329381-3	chr5	125328885	125329885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	11709.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	53.2	27.65	64.75	66.12	20.06	57.87	64.43	27.41	37.47
Merged-chr6-88826240-3	chr6	88825740	88826740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	15695.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	74.94	67.27	45.32	75.57	41.99	33.76	94.0	83.13	40.59
Merged-chr4-138217117-3	chr4	138216622	138217622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122897)	promoter-TSS (NM_001122897)	-5.0	NM_001356432	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	119.56	82.02	63.82	122.8	59.71	81.99	140.47	90.64	57.46
Merged-chr9-13536883-3	chr9	13536377	13537377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83112.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	106.97	82.48	50.87	85.01	76.51	68.32	60.2	61.46	39.97
Merged-chr11-52072050-3	chr11	52071551	52072551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-26773.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	15.45	12.9	0.0	21.59	7.93	9.65	20.07	7.96	3.75
Merged-chr6-115361124-3	chr6	115360645	115361645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308352)	promoter-TSS (NM_001308352)	1.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	122.42	60.82	59.2	159.23	90.97	55.46	133.08	72.07	39.97
Merged-chr19-41900716-3	chr19	41900216	41901216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4563.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	24.6	16.59	18.5	22.27	16.79	15.27	22.18	15.92	10.62
Merged-chr9-45268201-3	chr9	45267693	45268693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008348, intron 1 of 6)	intron (NM_008348, intron 1 of 6)	956.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	230.54	213.34	142.44	200.39	159.08	182.46	242.92	225.51	138.65
Merged-chr16-33951091-3	chr16	33950610	33951610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15928.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	54.92	43.31	26.82	58.7	34.52	50.64	74.99	34.05	30.6
Merged-chr7-59229207-3	chr7	59228699	59229699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173010, exon 1 of 9)	5' UTR (NM_173010, exon 1 of 9)	449.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	348.95	361.72	371.83	338.71	395.13	323.12	311.57	276.35	249.19
Merged-chr6-85451408-3	chr6	85450906	85451906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-99.0	NM_007638	12468.0	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	132.72	139.62	81.4	132.24	144.15	111.73	137.3	130.0	85.56
Merged-chr16-22009335-3	chr16	22008852	22009852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357424)	promoter-TSS (NM_001357424)	-132.0	NM_029457	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	320.35	222.1	159.09	292.15	217.39	102.88	209.12	183.94	111.79
Merged-chr6-124834703-3	chr6	124834156	124835156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013538)	TTS (NM_013538)	4480.0	NM_013538	14793.0	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	144.73	138.24	74.0	209.16	179.61	163.17	134.14	142.38	82.44
Merged-chr12-113124954-3	chr12	113124478	113125478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 7 of 19)	intron (NM_001346696, intron 7 of 19)	-15258.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	306.62	319.78	225.69	248.97	227.19	181.66	209.12	275.03	149.89
Merged-chr1-93803864-3	chr1	93803371	93804371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025454)	promoter-TSS (NM_025454)	-94.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	288.32	167.73	166.49	216.58	155.35	135.84	191.17	143.7	93.05
Merged-chr19-47137365-3	chr19	47136864	47137864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	930.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	109.26	66.81	81.4	128.87	83.04	103.69	173.21	149.01	97.43
Merged-chr13-55622945-3	chr13	55622411	55623411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-94.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	252.85	277.85	149.84	195.67	204.33	188.09	253.48	244.52	124.28
Merged-chr13-43365528-3	chr13	43365043	43366043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5173.0	NM_178848	68346.0	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	29.17	20.27	24.05	41.16	24.26	32.15	33.8	14.15	11.24
Merged-chr6-125572681-3	chr6	125572185	125573185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	MTD|LTR|ERVL-MaLR	19737.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	164.75	201.36	150.77	182.85	195.0	159.95	188.0	276.35	144.27
Merged-chr5-93267142-3	chr5	93266628	93267628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	-445.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	134.43	177.86	133.19	162.61	126.42	153.52	155.26	147.68	112.42
Merged-chr13-21941066-3	chr13	21940542	21941542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4052.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	38.9	29.49	17.57	26.99	31.26	28.13	32.74	39.8	15.61
Merged-chr3-87376348-3	chr3	87375843	87376843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310545)	promoter-TSS (NM_001310545)	-44.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	58.92	28.57	24.97	42.51	31.26	27.33	128.85	135.3	77.44
Merged-chr10-88622779-3	chr10	88622299	88623299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17647.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	179.62	206.43	58.27	203.76	217.39	143.88	102.45	122.48	57.46
Merged-chr2-124684707-3	chr2	124684210	124685210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31129.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	150.45	141.0	95.27	134.27	105.43	103.69	154.2	150.78	98.05
Merged-chr3-60570848-3	chr3	60570332	60571332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	69653.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	42.9	73.73	26.82	58.03	52.72	28.94	52.81	53.06	23.11
Merged-chr7-101907131-3	chr7	101906644	101907644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081679)	promoter-TSS (NM_001081679)	-785.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	234.54	193.07	187.77	173.4	140.89	169.6	222.86	262.21	121.78
Merged-chr9-65655656-3	chr9	65655143	65656143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028030, intron 6 of 7)	ID_B1|SINE|B4	-20905.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	12.59	14.28	12.95	22.94	9.33	10.45	11.62	11.94	6.25
Merged-chr5-30814606-3	chr5	30814121	30815121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133350)	promoter-TSS (NM_133350)	-20.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	46.34	24.42	21.27	33.74	15.39	14.47	12.67	8.4	19.98
Merged-chr17-84957352-2	chr17	84956830	84957830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	93.0	NR_027929	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	155.03	233.62	135.04	167.33	184.27	171.21	185.89	266.63	126.78
Merged-chr3-144039638-3	chr3	144039098	144040098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162734.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	18.88	17.97	16.65	14.17	11.66	14.47	14.79	14.59	9.99
Merged-chr1-40087671-3	chr1	40087183	40088183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360800, intron 1 of 8)	MER5A|DNA|hAT-Charlie	1590.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	70.36	52.99	19.42	41.83	25.66	24.11	32.74	26.09	23.73
Merged-chr18-23807841-3	chr18	23807375	23808375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	3905.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	261.43	276.01	172.04	289.45	222.52	134.23	252.43	271.93	148.01
Merged-chr15-10470301-3	chr15	10469812	10470812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030046, exon 1 of 12)	exon (NM_030046, exon 1 of 12)	204.0	NM_030046	78244.0	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	149.88	93.08	111.92	134.27	64.38	91.63	148.92	54.83	47.46
Merged-chr13-30545372-3	chr13	30544871	30545871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025710)	promoter-TSS (NM_025710)	-55.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	205.94	217.03	169.27	190.27	223.92	184.87	204.9	182.17	151.76
Merged-chr9-41153078-3	chr9	41152568	41153568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	4994.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	41.19	38.25	44.4	68.82	51.78	32.15	89.78	67.21	53.71
Merged-chr5-24101032-3	chr5	24100538	24101538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161800, intron 1 of 9)	CpG	448.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	96.68	81.56	37.0	116.73	76.97	52.25	94.0	53.5	46.84
Merged-chr10-127599614-3	chr10	127599103	127600103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	21545.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	311.77	277.39	215.51	321.84	202.0	270.88	277.78	327.65	176.12
Merged-chr18-80707706-3	chr18	80707234	80708234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	CpG	439.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	318.06	282.0	271.94	294.18	207.6	150.31	297.84	188.81	157.38
Merged-chr7-100591119-3	chr7	100590595	100591595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003559, intron 1 of 7)	intron (NR_003559, intron 1 of 7)	319.0	NR_153425	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	244.84	158.97	103.59	194.99	155.81	135.04	236.59	206.49	90.56
Merged-chr11-120347588-3	chr11	120347076	120348076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-163.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	120.7	108.75	129.49	99.86	73.24	102.08	94.0	99.93	104.92
Merged-chr12-21370447-3	chr12	21369963	21370963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3169.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	143.59	196.75	133.19	141.69	146.48	142.27	197.51	303.77	120.53
Merged-chr12-102439834-3	chr12	102439317	102440317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-4.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	301.47	246.52	164.64	273.26	205.26	230.69	256.65	289.18	138.02
Merged-chr10-77545112-3	chr10	77544594	77545594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 3 of 15)	intron (NM_008404, intron 3 of 15)	14746.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	44.62	57.6	49.95	74.89	36.85	61.09	43.3	34.05	59.33
Merged-chr14-17851080-3	chr14	17850516	17851516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	MER2|DNA|TcMar-Tigger	-130628.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	40.04	55.75	31.45	35.09	30.32	26.53	52.81	51.29	23.73
Merged-chr9-48388642-1	chr9	48388142	48389142	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172921, intron 2 of 8)	RLTR19D|LTR|ERVK	26601.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.0	2.76	2.77	6.07	3.73	4.02	17.96	19.46	28.1
Merged-chr12-3349585-3	chr12	3349096	3350096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15536.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	39.47	50.69	50.87	45.88	37.79	63.5	70.76	51.29	52.46
Merged-chr5-91961118-3	chr5	91960621	91961621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1435.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	77.8	76.03	64.75	63.42	39.19	49.83	97.17	83.13	49.34
Merged-chr2-36217163-3	chr2	36216669	36217669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13257.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	173.33	127.18	125.79	109.98	66.71	116.55	247.15	182.17	108.04
Merged-chr17-71598777-3	chr17	71598301	71599301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-40.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	299.76	268.18	150.77	365.7	385.8	233.9	302.07	312.61	159.25
Merged-chr5-114707753-3	chr5	114707238	114708238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029992)	promoter-TSS (NM_029992)	-41.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	40.62	34.56	24.97	52.63	44.32	39.39	48.58	32.72	16.24
Merged-chr5-92042815-3	chr5	92042307	92043307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276315)	promoter-TSS (NM_001276315)	-111.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	31.46	18.43	17.57	83.66	62.05	57.87	47.53	37.14	21.23
Merged-chr11-46480694-3	chr11	46480210	46481210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	25779.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	43.48	62.21	37.0	98.51	60.65	85.2	69.71	39.35	63.08
Merged-chr5-77265260-3	chr5	77264759	77265759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011263)	promoter-TSS (NM_011263)	-235.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	51.48	47.0	49.02	77.59	46.65	94.04	80.27	61.9	34.35
Merged-chr6-53566911-3	chr6	53566387	53567387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-6487.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	93.82	94.92	91.57	80.29	63.91	62.7	117.24	117.62	73.69
Merged-chr19-5457544-3	chr19	5457033	5458033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243307)	promoter-TSS (NM_001243307)	30.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	86.38	70.96	71.22	114.7	105.9	86.01	96.11	78.71	38.1
Merged-chr15-99333158-3	chr15	99332662	99333662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 4 of 25)	intron (NM_001310622, intron 4 of 25)	29878.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	79.52	77.87	61.97	74.89	74.17	104.49	72.88	93.74	76.82
Merged-chr11-31870747-3	chr11	31870151	31871151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290676)	promoter-TSS (NM_001290676)	-289.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	160.75	189.84	124.87	184.2	178.67	132.63	177.44	154.76	71.82
Merged-chr18-77804870-3	chr18	77804362	77805362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-8472.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	85.24	75.11	61.05	68.82	31.26	58.68	86.61	73.84	60.58
Merged-chr13-34037647-3	chr13	34037150	34038150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026512)	promoter-TSS (NM_026512)	9.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	36.61	27.65	22.2	34.41	37.32	42.6	33.8	22.55	16.24
Merged-chr1-43521210-3	chr1	43520711	43521711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75460.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	38.33	36.86	31.45	39.81	38.72	27.33	42.25	47.75	37.47
Merged-chr15-102296206-3	chr15	102295699	102296699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014976)	promoter-TSS (NM_001014976)	-94.0	NM_001014976	105988.0	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	9.15	8.29	24.05	8.77	8.86	16.08	13.73	16.8	18.74
Merged-chr8-22838892-3	chr8	22838389	22839389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-20650.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	114.98	107.36	72.15	100.53	93.77	98.87	92.94	80.03	61.2
Merged-chr9-108094565-3	chr9	108094074	108095074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146226)	promoter-TSS (NM_146226)	-94.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	61.78	45.16	37.92	47.23	50.38	34.56	61.26	50.85	26.23
Merged-chr2-119016006-3	chr2	119015497	119016497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13396.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	45.19	37.78	18.5	53.98	33.12	32.15	57.03	43.33	28.73
Merged-chr17-47214283-3	chr17	47213779	47214779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-15951.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	83.52	82.48	97.12	87.04	57.85	86.81	42.25	53.06	59.33
Merged-chr11-9531867-3	chr11	9531383	9532383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339941.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	19.45	30.41	26.82	35.09	25.19	24.11	34.85	27.86	26.85
Merged-chr1-131963829-3	chr1	131963330	131964330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	915.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	203.65	196.29	175.74	210.51	254.71	202.55	157.37	181.29	98.68
Merged-chr2-32078716-3	chr2	32078234	32079234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	4971.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	57.78	41.47	51.8	43.86	29.86	65.11	50.7	47.31	47.46
Merged-chr17-81518510-3	chr17	81518000	81519000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219887.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	23.45	23.04	20.35	20.92	29.39	28.13	19.01	16.36	19.36
Merged-chr1-39578689-3	chr1	39578205	39579205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1358.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	275.16	285.69	135.04	248.3	232.32	170.4	238.7	258.23	159.88
Merged-chr13-101907889-3	chr13	101907383	101908383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139666.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	241.98	215.19	161.87	203.09	184.27	143.07	190.11	250.27	99.92
Merged-chr11-51688712-3	chr11	51688215	51689215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-81.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	296.32	308.73	210.89	288.78	289.7	229.08	291.51	297.14	141.77
Merged-chr6-143115233-3	chr6	143114757	143115757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	intron (NR_153819, intron 7 of 8)	-15105.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	76.08	32.25	26.82	96.48	38.72	59.48	104.56	51.73	36.85
Merged-chr6-113483350-3	chr6	113482844	113483844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-12.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	177.34	202.75	120.24	181.5	189.4	180.05	171.1	185.71	116.16
Merged-chr3-30860903-1	chr3	30860403	30861403	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	Lx8b|LINE|L1	4953.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	5.15	11.52	16.65	6.75	10.73	19.29	8.45	5.31	21.86
Merged-chr7-90129467-3	chr7	90128967	90129967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146194)	promoter-TSS (NM_146194)	7.0	NR_046006	78329.0	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	278.59	246.98	148.92	285.41	299.03	223.45	257.71	312.61	131.15
Merged-chr17-43077191-3	chr17	43076661	43077661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	60606.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	225.96	167.26	94.35	228.05	156.75	146.29	84.49	69.86	48.09
Merged-chr8-22658083-3	chr8	22657505	22658505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4568.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	90.38	117.96	57.35	101.21	76.51	86.01	84.49	101.26	80.56
Merged-chr1-178319468-1	chr1	178318968	178319968	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025511, intron 1 of 3)	PB1D10|SINE|Alu	315.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	227.68	213.8	149.84	248.97	201.53	174.42	174.27	193.23	136.77
Merged-chr2-79056291-3	chr2	79055797	79056797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186619.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	16.02	15.21	3.7	19.57	8.4	1.61	25.35	8.84	7.49
Merged-chr12-99561430-3	chr12	99560888	99561888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2453.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	106.4	132.25	74.92	107.28	61.11	92.44	92.94	158.74	55.58
Merged-chr7-75142759-1	chr7	75142259	75143259	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360573, intron 7 of 13)	CT-rich|Low_complexity|Low_complexity	77260.0	NM_001360575	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	9.15	1.38	9.25	6.75	8.86	1.61	4.22	0.88	3.12
Merged-chr10-80142290-3	chr10	80141782	80142782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	7.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	123.56	88.47	100.82	118.75	87.7	86.01	95.06	99.93	72.45
Merged-chr4-145241106-3	chr4	145240550	145241550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	5820.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	350.1	247.9	211.81	322.51	181.01	237.12	315.8	289.62	202.35
Merged-chr7-30973957-3	chr7	30973448	30974448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017405)	promoter-TSS (NM_017405)	144.0	NR_038860	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	36.61	32.72	12.95	33.74	20.06	28.13	46.47	25.65	24.98
Merged-chr2-11375267-3	chr2	11374789	11375789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	23211.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	35.47	51.61	29.6	32.39	51.78	46.62	79.21	85.78	28.73
Merged-chr10-123076411-3	chr10	123075874	123076874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153395, exon 1 of 34)	5' UTR (NM_153395, exon 1 of 34)	131.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	322.64	214.73	173.89	245.6	145.08	155.93	205.96	123.36	83.69
Merged-chr14-31408023-3	chr14	31407520	31408520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	9657.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	65.21	63.13	61.97	102.56	86.3	63.5	68.65	78.71	50.59
Merged-chr1-134494610-3	chr1	134494121	134495121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-39.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	166.47	165.88	99.89	227.38	255.18	215.42	214.41	285.2	140.52
Merged-chr19-42018078-3	chr19	42017578	42018578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-17960.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	99.54	66.35	92.5	103.23	59.25	96.45	73.93	28.74	50.59
Merged-chr9-90237654-1	chr9	90237154	90238154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	MIR3|SINE|MIR	33115.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	268.29	293.06	209.96	291.48	294.37	288.56	245.04	283.43	156.13
Merged-chr14-25780812-3	chr14	25780315	25781315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-11959.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	30.32	22.12	9.25	16.87	10.26	27.33	13.73	14.15	4.37
Merged-chr6-97857895-3	chr6	97857388	97858388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	50830.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	43.48	39.17	32.37	55.33	39.65	53.85	53.87	35.37	43.09
Merged-chr18-67699745-3	chr18	67699260	67700260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24861.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	89.81	118.42	91.57	99.18	67.18	86.01	116.18	122.04	69.95
Merged-chr7-80033540-3	chr7	80033037	80034037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	ID4|SINE|ID	7309.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	258.0	200.9	128.57	223.33	139.95	125.39	234.47	268.4	101.17
Merged-chr6-148831533-3	chr6	148831027	148832027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081113)	promoter-TSS (NM_001081113)	-60.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	18.31	11.06	12.95	25.64	16.79	20.09	31.69	22.55	6.87
Merged-chr10-62500399-3	chr10	62499905	62500905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	7352.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	76.66	49.76	32.37	60.72	49.45	34.56	57.03	83.13	26.23
Merged-chr10-58393231-3	chr10	58392724	58393724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-1149.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	121.28	149.75	101.74	103.91	102.17	97.26	122.52	136.63	98.05
Merged-chr7-80835513-3	chr7	80835017	80836017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-26591.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	209.37	148.83	153.54	228.05	165.14	135.04	232.36	232.58	116.16
Merged-chr11-32538945-3	chr11	32538462	32539462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	5696.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	172.19	127.18	114.69	182.85	113.36	148.7	158.43	198.98	93.68
Merged-chr4-34389396-3	chr4	34388874	34389874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161241.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	117.27	113.81	51.8	128.2	93.77	96.45	95.06	97.72	58.71
Merged-chr9-66975423-3	chr9	66974927	66975927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030717)	promoter-TSS (NM_030717)	57.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	189.35	154.36	143.37	206.46	168.88	122.98	154.2	120.27	109.29
Merged-chr6-136940172-3	chr6	136939659	136940659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-632.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	76.08	103.68	52.72	89.06	68.58	96.45	165.82	215.34	126.78
Merged-chr13-32935145-3	chr13	32934631	32935631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30382.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	36.61	33.64	13.87	40.48	36.85	22.51	33.8	41.12	19.98
Merged-chr13-51845713-3	chr13	51845236	51846236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-939.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	137.86	181.09	112.84	145.74	140.42	116.55	205.96	233.46	142.39
Merged-chr6-93068036-1	chr6	93067536	93068536	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	127454.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.57	0.92	0.0	1.35	5.6	4.02	6.34	0.0	4.37
Merged-chr6-72933166-2	chr6	72932664	72933664	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25068.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.57	0.0	0.0	38.46	20.99	17.68	44.36	49.08	45.59
Merged-chr8-80335876-1	chr8	80335376	80336376	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-158169.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	14.3	15.21	12.95	16.87	10.26	24.92	8.45	7.96	17.49
Merged-chr5-113910225-3	chr5	113909726	113910726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1520.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	51.48	44.24	54.57	58.7	41.05	75.56	40.14	27.86	34.97
Merged-chr17-83680443-3	chr17	83679941	83680941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-25722.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	65.79	76.95	68.45	48.58	36.85	42.6	52.81	78.26	57.46
Merged-chr2-58921215-3	chr2	58920736	58921736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	166052.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	226.53	255.74	99.89	258.42	200.13	184.07	233.42	291.39	96.8
Merged-chr6-125334591-3	chr6	125334083	125335083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	L1MB7|LINE|L1	13243.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	102.97	73.26	68.45	78.94	48.98	49.03	89.78	107.45	63.08
Merged-chr14-20661167-3	chr14	20660664	20661664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3410.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	37.76	23.96	31.45	39.13	32.66	43.4	31.69	15.92	26.85
Merged-chr11-121706938-3	chr11	121706439	121707439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4512.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	91.53	91.7	47.17	80.97	71.38	43.4	48.58	63.67	26.23
Merged-chr16-49971468-3	chr16	49970971	49971971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8989.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	176.19	185.24	123.94	217.26	143.68	135.04	205.96	212.68	106.79
Merged-chr7-43665130-3	chr7	43664622	43665622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4961.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	149.31	128.56	97.12	103.23	69.04	63.5	121.46	135.75	79.94
Merged-chr3-135423326-3	chr3	135422837	135423837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	96.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	395.86	312.87	261.76	383.24	304.16	276.5	334.81	332.51	174.87
Merged-chr2-167777512-3	chr2	167777039	167778039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	86362.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	650.43	488.43	284.89	576.88	485.17	204.16	447.82	535.46	180.49
Merged-chr3-142765170-3	chr3	142764664	142765664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145546)	promoter-TSS (NM_145546)	-83.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	151.59	143.76	135.04	170.03	144.15	108.51	166.88	137.96	88.06
Merged-chr4-129495936-3	chr4	129495433	129496433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4743.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	97.25	109.21	61.05	80.97	55.05	91.63	44.36	75.17	68.07
Merged-chr5-96997510-3	chr5	96997007	96998007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080708)	promoter-TSS (NM_080708)	-182.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	366.11	281.08	266.39	319.14	320.49	212.2	324.25	219.76	145.51
Merged-chr13-74317339-3	chr13	74316834	74317834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011051)	promoter-TSS (NM_011051)	-8.0	NM_001359996	18570.0	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	33.18	30.87	26.82	33.74	24.72	21.7	23.24	25.65	17.49
Merged-chr8-128594299-3	chr8	128593811	128594811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-91343.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	69.22	88.47	42.55	88.39	67.64	55.46	59.15	62.35	35.6
Merged-chr16-31081397-3	chr16	31080904	31081904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198626)	promoter-TSS (NM_198626)	28.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	27.46	13.36	19.42	21.59	17.73	26.53	38.02	13.71	13.74
Merged-chr2-117328722-3	chr2	117328244	117329244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	14133.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	36.04	49.3	38.85	33.06	33.12	27.33	47.53	33.6	33.1
Merged-chr13-55040247-3	chr13	55039747	55040747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359758, intron 11 of 14)	intron (NM_001359758, intron 11 of 14)	-18862.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	21.17	22.12	28.67	16.19	21.93	28.94	24.29	27.86	28.73
Merged-chr16-90747265-3	chr16	90746736	90747736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	8912.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	33.18	28.11	31.45	27.66	11.66	17.68	8.45	7.07	22.48
Merged-chr8-105855009-3	chr8	105854496	105855496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021513)	promoter-TSS (NM_021513)	-107.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	64.64	82.94	56.42	68.15	67.18	54.66	85.55	78.26	73.69
Merged-chr12-76403806-1	chr12	76403306	76404306	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	-370.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	121.28	112.89	108.22	113.35	101.7	91.63	129.91	102.14	89.31
Merged-chr2-129198622-3	chr2	129198086	129199086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-187.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	403.3	287.07	209.04	475.0	368.54	216.22	318.97	358.6	164.25
Merged-chr13-100602426-2	chr13	100601921	100602921	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	14523.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	8.58	3.69	5.55	182.85	128.29	51.44	79.21	79.15	58.08
Merged-chr16-36632348-3	chr16	36631856	36632856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	33721.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	334.08	283.84	164.64	350.85	320.49	214.61	282.0	386.9	150.51
Merged-chr5-64887249-3	chr5	64886740	64887740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45459.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	37.76	28.57	39.77	47.23	39.19	28.13	31.69	45.1	17.49
Merged-chr2-158361516-3	chr2	158361014	158362014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027887)	promoter-TSS (NR_027887)	-5.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	16.59	15.67	18.5	28.34	28.92	40.19	14.79	21.67	17.49
Merged-chr16-44199215-3	chr16	44198707	44199707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 3 of 7)	intron (NM_001029889, intron 3 of 7)	25810.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	40.62	35.94	38.85	55.33	45.72	45.01	33.8	35.82	27.48
Merged-chrX-134541805-3	chrX	134541305	134542305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013898).2	promoter-TSS (NM_013898).2	-135.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	113.84	108.28	74.92	118.08	111.5	98.06	114.07	99.93	58.08
Merged-chr18-23989593-3	chr18	23989078	23990078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011755)	promoter-TSS (NM_011755)	-56.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	66.93	75.11	66.6	61.4	48.98	57.87	68.65	51.29	31.23
Merged-chr1-62483240-3	chr1	62482727	62483727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 20 of 22)	L2c|LINE|L2	-220090.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	13.73	14.28	4.62	10.8	14.93	11.25	4.22	3.98	1.25
Merged-chr10-128779670-3	chr10	128779175	128780175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11235.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	302.04	332.69	148.92	283.38	283.17	208.18	271.44	320.13	123.03
Merged-chr5-64336917-3	chr5	64336420	64337420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106563.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	88.67	73.26	61.05	112.68	117.09	129.41	77.1	132.21	51.84
Merged-chr5-32997873-3	chr5	32997344	32998344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20972.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	6.86	5.99	14.8	10.8	4.67	8.04	8.45	6.19	5.62
Merged-chr1-77279759-3	chr1	77279260	77280260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217008.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	22.88	47.46	38.85	17.54	14.46	40.19	14.79	14.59	16.86
Merged-chr11-43681861-3	chr11	43681351	43682351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164231)	promoter-TSS (NM_001164231)	-147.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	132.72	98.15	114.69	146.41	83.04	102.88	136.25	63.23	83.69
Merged-chr2-180920985-3	chr2	180920470	180921470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173761)	promoter-TSS (NM_173761)	-34.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	277.45	264.03	160.94	250.32	226.26	155.93	241.87	147.24	101.8
Merged-chr4-88537575-3	chr4	88537074	88538074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14780.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	87.52	94.0	67.52	119.43	110.1	86.81	127.8	125.13	80.56
Merged-chr4-132306188-3	chr4	132305721	132306721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-2457.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	87.52	74.65	86.02	76.24	114.29	100.47	123.57	202.95	80.56
Merged-chr17-50508874-3	chr17	50508376	50509376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013880)	promoter-TSS (NM_013880)	-671.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	157.89	121.65	156.32	163.96	125.02	157.54	161.6	103.91	89.31
Merged-chr18-70522322-3	chr18	70521841	70522841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289515, intron 6 of 9)	intron (NM_001289515, intron 6 of 9)	5555.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	54.35	55.29	37.0	43.86	42.45	36.97	86.61	78.71	41.22
Merged-chr19-36926049-3	chr19	36925556	36926556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080706)	promoter-TSS (NM_001080706)	-23.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	466.8	389.36	370.91	356.93	340.08	306.24	797.42	619.92	383.46
Merged-chr19-53248263-3	chr19	53247774	53248774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001277100)	TTS (NM_001277100)	6931.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	9.15	8.75	3.7	18.22	14.46	9.65	10.56	6.19	9.99
Merged-chr6-52921525-3	chr6	52921039	52922039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11919.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	52.06	59.9	49.02	69.5	50.85	50.64	58.09	80.92	58.08
Merged-chr12-72536285-3	chr12	72535786	72536786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-71.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	31.46	25.8	21.27	51.28	38.72	31.35	34.85	33.6	16.86
Merged-chr2-69015346-3	chr2	69014784	69015784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-120516.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	43.48	31.33	39.77	49.25	41.99	34.56	41.19	40.68	26.23
Merged-chr11-115692981-3	chr11	115692484	115693484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	6550.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	438.19	406.41	249.74	423.72	353.61	217.02	363.33	537.68	166.12
Merged-chr4-136286044-3	chr4	136285565	136286565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-2.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	89.24	116.58	86.02	93.11	133.42	108.51	119.35	125.58	79.94
Merged-chr6-5093812-3	chr6	5093313	5094313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	MLT1F2|LTR|ERVL-MaLR	100133.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	108.69	133.17	91.57	101.21	79.31	109.32	124.63	138.4	74.94
Merged-chr11-9335430-3	chr11	9334951	9335951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	143509.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	92.1	108.28	31.45	101.88	90.04	40.19	114.07	199.42	61.83
Merged-chr7-63903867-3	chr7	63903370	63904370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-12987.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	112.12	114.27	61.05	101.21	82.57	92.44	119.35	109.66	60.58
Merged-chr3-105895436-3	chr3	105894942	105895942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-8979.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	187.06	165.42	103.59	186.22	140.89	109.32	156.32	190.57	104.92
Merged-chr11-106388095-3	chr11	106387601	106388601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5320.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	22.31	24.42	20.35	49.93	26.12	27.33	44.36	51.73	24.98
Merged-chr1-74438174-3	chr1	74437679	74438679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28795.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	98.97	93.54	47.17	124.82	88.64	50.64	82.38	58.37	38.1
Merged-chr7-127091284-1	chr7	127090784	127091784	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178901)	promoter-TSS (NM_178901)	-152.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	8.58	1.38	3.7	66.8	34.99	32.15	2.11	1.77	2.5
Merged-chr18-40329820-1	chr18	40329320	40330320	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	L1M4c|LINE|L1	71459.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.86	3.23	3.7	2.02	1.87	3.22	13.73	5.75	11.24
Merged-chr1-170867833-3	chr1	170867376	170868376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-105.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	261.43	292.6	100.82	237.5	207.13	118.16	190.11	225.95	102.42
Merged-chr2-90542849-3	chr2	90542345	90543345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37802.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	164.18	105.52	62.9	174.08	94.7	56.27	122.52	112.31	61.2
Merged-chr2-103797449-4	chr2	103796945	103797945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111290)	promoter-TSS (NM_001111290)	195.0	NM_001111291	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	252.28	200.44	189.62	250.32	171.21	189.69	211.24	218.43	138.02
Merged-chr9-57651074-3	chr9	57650587	57651587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2544.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	212.8	189.38	187.77	184.87	167.48	202.55	220.74	306.42	146.76
Merged-chr10-19063581-3	chr10	19063086	19064086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-48176.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	323.78	293.06	173.89	283.38	256.11	180.05	320.02	389.55	195.48
Merged-chr4-132535610-3	chr4	132535100	132536100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172400)	promoter-TSS (NM_172400)	41.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	153.88	135.01	118.39	184.2	143.68	163.17	167.93	178.64	88.68
Merged-chr2-129310018-3	chr2	129309528	129310528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-56.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	197.93	133.17	124.87	241.55	161.88	211.4	190.11	188.36	98.05
Merged-chr13-104228868-3	chr13	104228382	104229382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021790)	promoter-TSS (NM_021790)	-38.0	NM_172807	238831.0	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	114.98	155.28	135.04	69.5	125.96	128.61	151.03	229.48	91.81
Merged-chr3-89730682-3	chr3	89730179	89731179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-39.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	193.93	188.0	144.29	171.38	185.67	168.8	201.73	257.34	126.15
Merged-chr7-28962414-3	chr7	28961908	28962908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360548)	promoter-TSS (NM_001360548)	-76.0	NM_001360548	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	99.54	89.39	52.72	99.86	101.7	86.01	95.06	83.13	35.6
Merged-chr13-74009361-3	chr13	74008878	74009878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182839)	promoter-TSS (NM_182839)	-41.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	41.19	32.25	26.82	32.39	36.85	33.76	23.24	11.94	9.99
Merged-chr18-56975330-3	chr18	56974845	56975845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029909)	promoter-TSS (NM_029909)	34.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	79.52	95.84	74.92	89.74	101.7	109.32	92.94	67.65	55.58
Merged-chr17-26886236-3	chr17	26885724	26886724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-30867.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	38.33	30.41	29.6	33.06	42.92	42.6	30.63	28.74	9.99
Merged-chr19-47133280-3	chr19	47132778	47133778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133746, intron 2 of 2)	intron (NM_133746, intron 2 of 2)	5016.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	26.31	23.5	37.0	40.48	34.99	50.64	62.31	38.03	35.6
Merged-chr5-88720830-3	chr5	88720327	88721327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026735)	promoter-TSS (NM_026735)	-44.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	144.73	141.46	136.89	170.03	145.55	151.92	183.78	154.32	124.28
Merged-chr3-105815483-3	chr3	105815008	105816008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045845)	promoter-TSS (NR_045845)	-59.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	192.78	106.44	83.25	149.79	112.9	77.97	116.18	145.47	61.83
Merged-chr13-12258204-3	chr13	12257725	12258725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081128)	promoter-TSS (NM_001081128)	-112.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	161.32	188.92	153.54	146.41	189.4	137.45	168.99	184.83	95.55
Merged-chr13-44937911-3	chr13	44937410	44938410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	RMER17C2|LTR|ERVK	64186.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	29.17	28.57	32.37	31.04	20.06	20.9	20.07	30.07	19.36
Merged-chr11-107012799-3	chr11	107012288	107013288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13263.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	231.11	230.85	159.09	209.16	166.08	179.24	220.74	309.52	121.16
Merged-chr3-65397382-3	chr3	65396881	65397881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4828.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	22.88	33.18	12.95	26.31	23.33	16.88	24.29	18.13	26.23
Merged-chr13-105051626-1	chr13	105051126	105052126	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	3304.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	6.86	6.45	0.0	4.05	3.73	5.63	6.34	1.77	1.25
Merged-chr16-13109774-3	chr16	13109270	13110270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015769)	promoter-TSS (NM_015769)	34.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	144.73	178.32	92.5	122.12	150.68	82.79	101.39	101.26	83.69
Merged-chr1-172370172-2	chr1	172369686	172370686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001039484, exon 2 of 2)	3' UTR (NM_001039484, exon 2 of 2)	-6345.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	44.62	50.23	62.9	49.25	38.25	38.58	9.51	10.61	9.99
Merged-chr11-121796225-3	chr11	121795711	121796711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34007.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	42.33	49.76	24.97	59.38	37.79	107.71	53.87	58.81	38.1
Merged-chr11-68706681-3	chr11	68706186	68707186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	14771.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	74.94	108.28	49.95	132.24	170.28	163.17	127.8	144.59	58.08
Merged-chr1-46849949-3	chr1	46849444	46850444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	3674.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	15.45	11.52	6.47	6.07	6.53	17.68	7.39	3.1	9.99
Merged-chr2-45196689-3	chr2	45196187	45197187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79245.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	327.79	390.28	245.11	329.94	329.82	302.22	345.37	439.07	201.1
Merged-chr12-104124187-1	chr12	104123687	104124687	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-3809.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	8.58	5.07	3.7	12.14	14.0	8.04	13.73	5.75	8.12
Merged-chr8-83566739-3	chr8	83566241	83567241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025843)	promoter-TSS (NM_025843)	-17.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	97.25	82.02	47.17	108.63	84.44	79.58	132.02	115.85	53.71
Merged-chr1-34838495-3	chr1	34837980	34838980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	ORR1B1|LTR|ERVL-MaLR	4570.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	71.51	86.17	75.85	126.85	119.43	81.99	106.67	141.94	74.94
Merged-chr10-118085472-3	chr10	118084964	118085964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56323.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	312.91	217.03	164.64	332.64	237.92	226.67	268.27	279.89	149.26
Merged-chr14-17899902-1	chr14	17899402	17900402	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-81742.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	9.72	14.28	7.4	10.8	11.2	42.6	26.4	25.2	24.98
Merged-chr5-144003019-3	chr5	144002521	144003521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177682, intron 7 of 14)	intron (NM_177682, intron 7 of 14)	11832.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	44.05	45.16	49.95	22.94	24.26	40.19	47.53	55.27	34.97
Merged-chr4-53149903-3	chr4	53149402	53150402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	172.76	133.17	78.62	192.97	180.54	127.0	160.54	212.24	108.04
Merged-chr1-91080542-3	chr1	91080097	91081097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 6 of 22)	intron (NM_008515, intron 6 of 22)	27153.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	149.31	116.12	98.05	121.45	74.64	88.42	87.66	95.95	33.1
Merged-chr1-165237026-3	chr1	165236529	165237529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-69.0	NM_001357410	226591.0	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	153.31	167.73	119.32	128.87	138.55	134.23	190.11	179.52	92.43
Merged-chr16-95711933-1	chr16	95711433	95712433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011809, intron 4 of 9)	intron (NM_011809, intron 4 of 9)	9526.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	2.29	1.84	2.77	5.4	3.73	4.82	9.51	4.42	5.0
Merged-chr17-47156393-3	chr17	47155881	47156881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	15439.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	26.31	19.35	21.27	16.19	17.26	19.29	7.39	4.42	3.75
Merged-chr9-110038095-3	chr9	110037594	110038594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 8 of 17)	intron (NM_001205332, intron 8 of 17)	-13927.0	NM_001311163	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	10.3	7.37	11.1	23.62	7.93	9.65	4.22	12.38	9.99
Merged-chr5-135468507-3	chr5	135467969	135468969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-73923.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	262.0	260.34	182.22	226.71	203.4	179.24	213.35	281.66	123.66
Merged-chr10-13192992-5	chr10	13192489	13193489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 1 of 10)	CpG	148.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	600.66	628.97	364.43	543.15	536.02	408.32	471.06	611.08	294.78
Merged-chr9-107554558-3	chr9	107553991	107554991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019713)	promoter-TSS (NM_019713)	-92.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	274.01	211.96	153.54	272.59	203.86	207.38	204.9	244.96	154.26
Merged-chr8-70768427-3	chr8	70767932	70768932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008841, exon 16 of 16)	3' UTR (NM_008841, exon 16 of 16)	-1769.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	443.34	376.0	283.96	365.02	289.7	289.36	416.14	569.95	308.52
Merged-chr17-23740409-3	chr17	23739895	23740895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-65.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	38.9	21.2	34.22	20.24	30.32	62.7	25.35	17.24	21.86
Merged-chr10-80399693-3	chr10	80399189	80400189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306143)	promoter-TSS (NM_001306143)	-158.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	355.25	252.05	308.93	374.47	228.12	196.12	272.5	276.35	191.11
Merged-chr4-132212261-3	chr4	132211770	132212770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	-14.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	208.23	171.87	114.69	159.23	156.75	160.76	212.29	145.47	98.05
Merged-chr4-138068829-3	chr4	138068353	138069353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	69665.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	147.59	145.61	64.75	57.35	34.06	52.25	121.46	141.94	47.46
Merged-chr7-127196066-3	chr7	127195549	127196549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027353)	promoter-TSS (NM_027353)	28.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	75.51	64.05	50.87	68.82	78.84	68.32	81.33	92.41	67.45
Merged-chr3-126695552-3	chr3	126695039	126696039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	98588.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	57.78	80.64	61.97	53.98	58.78	39.39	97.17	77.82	38.1
Merged-chr1-137921791-3	chr1	137921300	137922300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44655.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	27.46	38.25	23.12	49.25	42.92	53.05	60.2	63.67	40.59
Merged-chr7-34912337-3	chr7	34911850	34912850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008820)	promoter-TSS (NM_008820)	-57.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	153.31	151.14	98.97	121.45	151.62	134.23	154.2	126.02	53.08
Merged-chr10-117063466-2	chr10	117062966	117063966	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-91.0	NM_001358767	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	185.92	172.79	136.89	151.14	167.01	155.93	128.85	153.43	89.93
Merged-chr13-80886135-3	chr13	80885648	80886648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	53.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	634.41	552.02	345.01	721.95	726.35	446.91	514.36	657.06	280.41
Merged-chr11-120316223-3	chr11	120315724	120316724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31189.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	35.47	17.05	35.15	31.04	19.59	31.35	34.85	20.78	18.74
Merged-chr2-157561362-3	chr2	157560850	157561850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010923, intron 2 of 2)	intron (NM_010923, intron 2 of 2)	1272.0	NM_180960	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	6.29	6.45	9.25	3.37	4.67	12.86	6.34	3.98	2.5
Merged-chr7-114254497-5	chr7	114254010	114255010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033370, intron 1 of 21)	CpG	170.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	247.7	291.68	196.09	262.47	229.99	216.22	280.95	250.27	156.13
Merged-chr8-105701125-3	chr8	105700630	105701630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-18.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	262.57	282.92	180.37	213.21	223.92	174.42	217.57	295.81	123.03
Merged-chr10-17948123-3	chr10	17947622	17948622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033432)	promoter-TSS (NM_001033432)	-55.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	127.0	109.21	92.5	136.97	89.57	78.77	109.84	84.01	59.95
Merged-chr18-68301016-1	chr18	68300516	68301516	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153794)	promoter-TSS (NM_153794)	596.0	NM_001361003	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	101.25	142.38	84.17	118.08	139.95	110.12	138.36	138.84	61.2
Merged-chrX-13461783-3	chrX	13461279	13462279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5893.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	133.86	127.18	59.2	169.35	110.56	109.32	101.39	149.45	65.58
Merged-chr16-3908654-3	chr16	3908169	3909169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	-16.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	69.22	88.47	59.2	70.85	61.11	59.48	65.48	73.84	43.09
Merged-chr2-148685966-3	chr2	148685460	148686460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	4840.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	98.39	89.39	86.95	84.34	80.71	71.54	98.23	126.46	61.83
Merged-chr14-20695720-3	chr14	20695209	20696209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168273)	TTS (NM_001168273)	741.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	201.93	161.27	146.14	217.93	161.41	158.35	149.98	156.09	103.67
Merged-chr7-122459374-2	chr7	122458862	122459862	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170237.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	12.01	10.14	11.1	27.66	48.52	32.15	47.53	30.95	37.47
Merged-chr17-10704332-1	chr17	10703832	10704832	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	L1MEf|LINE|L1	135859.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	9.15	9.68	3.7	31.04	31.72	28.13	1.06	3.1	2.5
Merged-chr10-117376994-3	chr10	117376484	117377484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310609)	promoter-TSS (NM_001310609)	-11.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	335.8	228.55	203.49	298.9	166.54	163.97	304.18	210.03	143.64
Merged-chr8-47991097-3	chr8	47990574	47991574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-523.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	132.14	159.43	126.72	154.51	169.34	177.64	135.19	132.65	91.18
Merged-chr3-8991021-3	chr3	8990523	8991523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13181.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	60.07	64.97	69.37	68.15	38.72	44.21	98.23	74.73	60.58
Merged-chr10-80051972-7	chr10	80051460	80052460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-1528.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	171.04	144.69	108.22	199.04	138.09	151.11	214.41	213.12	96.18
Merged-chr10-71344884-3	chr10	71344401	71345401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134007)	promoter-TSS (NM_134007)	-52.0	NM_134007	52637.0	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	54.92	49.76	70.3	69.5	89.57	68.32	90.83	69.86	46.84
Merged-chr7-98655829-3	chr7	98655321	98656321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172280, intron 1 of 19)	CpG	748.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	124.71	78.33	140.59	93.79	82.11	136.64	101.39	99.05	86.81
Merged-chr8-26697782-3	chr8	26697288	26698288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126635.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	109.26	99.53	94.35	99.18	63.91	86.81	156.32	126.9	78.07
Merged-chr19-37137359-3	chr19	37136877	37137877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	intron (NM_001290829, intron 3 of 9)	-36466.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	40.62	38.71	17.57	62.07	48.98	46.62	57.03	43.77	28.1
Merged-chr6-65144798-3	chr6	65144280	65145280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019455)	promoter-TSS (NM_019455)	-50.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	350.67	348.35	126.72	401.46	348.48	200.95	231.3	313.05	101.8
Merged-chr2-70964947-3	chr2	70964458	70965458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110512, exon 9 of 9)	3' UTR (NM_001110512, exon 9 of 9)	53416.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	263.14	224.4	136.89	218.61	234.65	187.28	330.59	350.2	148.64
Merged-chr19-5088026-3	chr19	5087533	5088533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-505.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	22.31	26.73	25.9	41.16	27.52	33.76	36.97	45.1	31.23
Merged-chr6-116193543-3	chr6	116193056	116194056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177412)	promoter-TSS (NM_177412)	-182.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	159.6	94.46	97.12	153.16	98.43	111.73	173.21	122.92	57.46
Merged-chrX-71052381-3	chrX	71051884	71052884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	2128.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	62.93	65.43	51.8	52.63	34.99	63.5	46.47	42.45	36.22
Merged-chr8-4613149-3	chr8	4612635	4613635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145591)	promoter-TSS (NM_145591)	-35.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	98.97	161.27	113.77	105.26	87.24	111.73	148.92	120.71	60.58
Merged-chr6-134268236-2	chr6	134267729	134268729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-128100.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	71.51	46.54	31.45	72.87	39.65	41.8	3.17	1.33	3.75
Merged-chr7-143829618-3	chr7	143829114	143830114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007856, intron 1 of 8)	intron (NM_007856, intron 1 of 8)	6447.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	139.01	138.24	131.34	132.24	179.14	103.69	151.03	204.28	93.05
Merged-chr14-31131026-3	chr14	31130539	31131539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2109.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	16.59	13.82	19.42	17.54	12.6	19.29	21.12	3.98	11.24
Merged-chr11-106085352-3	chr11	106084850	106085850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	(T)n|Simple_repeat|Simple_repeat	448.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	239.12	219.33	206.26	186.22	195.47	193.71	170.05	191.46	149.89
Merged-chr3-94974685-3	chr3	94974229	94975229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293716)	promoter-TSS (NM_001293716)	-2.0	NM_001293715	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	161.32	123.03	130.42	112.0	108.23	119.76	154.2	122.48	71.2
Merged-chr17-34837062-3	chr17	34836556	34837556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	37.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	244.84	213.8	188.69	187.57	176.81	141.47	193.28	321.9	128.65
Merged-chr10-80261735-3	chr10	80261190	80262190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-678.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	129.28	105.52	153.54	130.9	84.44	180.05	154.2	168.91	128.03
Merged-chr15-83036325-3	chr15	83035820	83036820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2923.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	57.78	53.91	46.25	45.88	42.92	40.99	45.42	62.35	28.1
Merged-chr2-167698102-3	chr2	167697601	167698601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110334)	TTS (NR_110334)	6924.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	112.12	105.06	105.44	133.59	86.3	98.06	113.01	157.41	75.57
Merged-chr14-25634592-3	chr14	25634093	25635093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	31080.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	38.33	47.92	33.3	58.03	35.45	60.28	38.02	34.93	23.73
Merged-chr9-99183478-3	chr9	99182968	99183968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-43257.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	179.05	161.27	111.92	208.49	144.62	127.0	215.46	202.51	129.9
Merged-chr4-154932986-3	chr4	154932489	154933489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4912.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	60.07	47.0	30.52	64.1	25.19	28.94	71.82	58.37	43.72
Merged-chr6-146577690-4	chr6	146577181	146578181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347513)	promoter-TSS (NM_001347513)	154.0	NM_001362108	71177.0	Mm.271774	NM_138757	ENSMUSG00000040250	Ints13	4933424B01Rik|Asun|Spata30	integrator complex subunit 13	protein-coding	294.61	252.05	234.01	244.92	284.1	213.81	235.53	323.67	159.88
Merged-chr2-157279051-3	chr2	157278561	157279561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	-37.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	123.56	113.35	91.57	155.19	100.77	141.47	120.41	92.86	94.3
Merged-chr1-66816558-1	chr1	66816058	66817058	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	CpG	1037.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	314.06	340.52	290.44	385.26	370.41	318.3	369.66	447.92	301.02
Merged-chr8-14842380-3	chr8	14841875	14842875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 14 of 15)	intron (NM_172910, intron 14 of 15)	-46161.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	9.15	8.75	14.8	11.47	10.73	12.86	11.62	6.19	6.25
Merged-chr5-76140480-4	chr5	76139965	76140965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	192.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	347.24	331.76	213.66	229.4	218.33	224.26	216.52	263.09	142.39
Merged-chr4-138972275-3	chr4	138971766	138972766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305423)	promoter-TSS (NM_001305423)	-17.0	NM_001305423	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	391.86	447.42	211.81	352.88	327.96	231.49	317.91	413.43	146.14
Merged-chr16-91523119-3	chr16	91522619	91523619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	4425.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	147.02	121.65	90.65	114.03	101.23	110.12	124.63	129.11	74.32
Merged-chrX-155728584-3	chrX	155728084	155729084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-105257.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	12.01	10.6	8.32	6.07	6.53	4.82	10.56	6.63	6.25
Merged-chr11-94392936-3	chr11	94392439	94393439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029600)	promoter-TSS (NM_029600)	37.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	77.23	77.41	70.3	95.14	71.84	98.06	74.99	83.57	63.08
Merged-chr5-135934005-3	chr5	135933501	135934501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	640.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	276.87	234.54	197.02	271.91	282.7	218.63	199.62	275.91	146.14
Merged-chr15-58872671-3	chr15	58872218	58873218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026642)	promoter-TSS (NM_026642)	69.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	101.83	119.8	58.27	103.23	100.3	97.26	92.94	140.61	57.46
Merged-chr9-42471397-3	chr9	42470881	42471881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173038, intron 1 of 7)	intron (NM_173038, intron 1 of 7)	877.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	29.75	38.71	44.4	39.81	49.45	31.35	35.91	42.01	39.35
Merged-chr11-83473016-3	chr11	83472545	83473545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-63.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	138.44	86.17	71.22	116.73	82.57	101.28	128.85	136.63	81.19
Merged-chr4-126162764-3	chr4	126162260	126163260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025856)	promoter-TSS (NM_025856)	-95.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	92.1	69.12	65.67	69.5	66.71	55.46	53.87	58.37	35.6
Merged-chr5-92348383-1	chr5	92347883	92348883	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021274, intron 1 of 3)	intron (NM_021274, intron 1 of 3)	506.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	33.75	39.17	61.05	35.09	25.19	16.88	52.81	60.58	30.6
Merged-chr10-14186781-3	chr10	14186277	14187277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	220398.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	101.83	74.65	49.02	74.22	50.85	47.42	98.23	61.46	40.59
Merged-chr1-180850886-3	chr1	180850390	180851390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-261.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	403.3	339.14	193.32	377.17	324.69	272.48	303.13	399.72	223.58
Merged-chr12-24710335-3	chr12	24709835	24710835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009104, intron 4 of 9)	intron (NM_009104, intron 4 of 9)	2081.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	23.45	57.14	29.6	33.74	34.99	24.92	34.85	47.31	24.98
Merged-chr4-123962626-3	chr4	123962137	123963137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	45204.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	88.67	86.63	25.9	86.36	102.17	76.36	58.09	79.59	53.08
Merged-chr2-167773115-3	chr2	167772616	167773616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81939.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	240.83	177.4	123.02	270.56	189.4	196.12	204.9	222.41	104.3
Merged-chr9-24899847-1	chr9	24899347	24900347	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74361.0	NR_153861	102631612.0	Mm.410759	NR_153861		E130101E03Rik	-	RIKEN cDNA E130101E03 gene	ncRNA	2.29	5.07	1.85	8.1	6.06	7.23	6.34	3.54	5.0
Merged-chr12-84409003-3	chr12	84408512	84409512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007647)	promoter-TSS (NM_007647)	17.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	88.1	67.27	30.52	114.03	92.37	63.5	89.78	69.86	44.97
Merged-chr11-34012173-3	chr11	34011664	34012664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-18971.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	157.31	133.63	126.72	155.19	75.11	139.06	141.53	111.43	85.56
Merged-chr16-31948567-3	chr16	31948082	31949082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	36.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	536.01	356.65	348.71	471.63	441.32	344.83	409.8	369.65	207.34
Merged-chr3-95160352-3	chr3	95159837	95160837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272024)	promoter-TSS (NM_001272024)	-83.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	15.45	1.84	11.1	11.47	5.13	7.23	9.51	3.54	0.62
Merged-chr18-61638141-3	chr18	61637627	61638627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1526.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	29.75	28.57	11.1	35.76	27.06	28.94	41.19	17.24	14.99
Merged-chr9-65740784-2	chr9	65740278	65741278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64230.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	94.96	70.96	39.77	61.4	68.11	84.4	4.22	4.42	8.12
Merged-chr10-111473183-3	chr10	111472690	111473690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015781)	promoter-TSS (NM_015781)	-37.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	62.35	47.0	49.02	82.32	53.65	50.64	76.05	36.7	24.98
Merged-chr8-84990537-3	chr8	84990053	84991053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-42.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	116.13	93.08	81.4	104.58	69.51	92.44	100.34	89.32	68.07
Merged-chr15-38515413-3	chr15	38514903	38515903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301688, intron 1 of 11)	intron (NM_001301688, intron 1 of 11)	3863.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	38.9	37.32	6.47	35.76	27.52	25.72	29.57	27.86	27.48
Merged-chr8-70765063-1	chr8	70764563	70765563	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023065, exon 2 of 8)	exon (NM_023065, exon 2 of 8)	1600.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	38.9	29.03	48.1	53.3	27.06	58.68	71.82	46.87	41.22
Merged-chr6-66535236-3	chr6	66534680	66535680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	-41.0	NM_019499	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	89.81	73.73	64.75	72.19	65.78	62.7	100.34	87.55	61.2
Merged-chr7-16326388-3	chr7	16325889	16326889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019748)	TTS (NM_019748)	16806.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	10.87	14.75	12.02	12.14	7.93	14.47	25.35	19.9	7.49
Merged-chr5-65973398-3	chr5	65972898	65973898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081104, intron 4 of 4)	LTR84a|LTR|ERVL	6274.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	79.52	59.44	46.25	91.09	44.32	64.3	89.78	67.21	37.47
Merged-chr10-100059448-3	chr10	100058937	100059937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 2 of 8)	intron (NM_001347156, intron 2 of 8)	43616.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	46.34	29.49	20.35	32.39	34.06	24.11	28.52	17.24	13.74
Merged-chr16-97992669-3	chr16	97992165	97993165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4650.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	16.02	13.82	13.87	7.42	6.53	5.63	17.96	15.48	16.24
Merged-chr6-33515506-3	chr6	33515004	33516004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	266376.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	50.91	64.97	48.1	56.0	60.65	50.64	57.03	64.56	54.33
Merged-chr6-17688925-3	chr6	17688403	17689403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5091.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	18.88	22.12	9.25	14.84	11.66	11.25	19.01	14.15	17.49
Merged-chr2-11425821-1	chr2	11425321	11426321	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27321.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	6.29	5.53	3.7	7.42	11.2	11.25	15.84	6.19	2.5
Merged-chr15-63500578-3	chr15	63500074	63501074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20966.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	77.23	62.67	49.02	81.64	60.18	87.61	58.09	65.88	57.46
Merged-chr14-102883508-3	chr14	102882984	102883984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99148.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	141.3	152.98	110.07	119.43	88.64	130.21	132.02	142.38	73.69
Merged-chrX-38364856-3	chrX	38364344	38365344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	48722.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	18.88	16.59	9.25	23.62	23.79	13.66	32.74	26.53	3.12
Merged-chr3-15179675-3	chr3	15179160	15180160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152642.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	75.51	91.7	73.07	61.4	70.44	51.44	45.42	47.75	29.35
Merged-chr3-95882425-3	chr3	95881903	95882903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-175.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	50.34	40.09	20.35	70.85	47.12	35.37	87.66	58.81	31.23
Merged-chr12-108792879-3	chr12	108792388	108793388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-423.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	544.6	429.91	342.23	481.75	469.31	327.95	383.4	379.38	214.84
Merged-chr19-45326633-1	chr19	45326133	45327133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-37101.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	2.86	1.84	5.55	4.05	1.4	4.82	2.11	1.33	1.25
Merged-chr3-135212518-3	chr3	135211996	135212996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-67.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	78.37	75.57	53.65	88.39	69.04	58.68	85.55	72.96	58.71
Merged-chr2-167381820-3	chr2	167381316	167382316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32638.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	31.46	18.89	25.9	49.93	24.26	27.33	46.47	12.38	8.74
Merged-chr17-33089459-3	chr17	33088972	33089972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001024950, exon 1 of 4)	5' UTR (NM_001024950, exon 1 of 4)	105.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	66.93	78.79	90.65	52.63	67.18	68.32	95.06	74.73	52.46
Merged-chr2-27405167-5	chr2	27404652	27405652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	22456.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	184.2	141.0	63.82	151.14	72.78	83.59	140.47	134.86	74.32
Merged-chr17-46552942-3	chr17	46552426	46553426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105942)	TTS (NR_105942)	963.0	NR_105942	102466778.0		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	13.16	10.6	1.85	11.47	4.2	8.04	8.45	6.63	11.24
Merged-chr5-43233732-3	chr5	43233238	43234238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	275.0	NM_001177379	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	287.17	229.47	299.68	294.85	260.78	307.85	260.88	228.16	211.09
Merged-chr5-134678246-3	chr5	134677717	134678717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305875)	promoter-TSS (NM_001305875)	31.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	88.67	80.18	75.85	66.12	67.64	98.06	57.03	49.08	48.09
Merged-chrX-96239796-3	chrX	96239299	96240299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030718)	promoter-TSS (NR_030718)	-127.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	66.36	77.41	48.1	75.57	61.11	38.58	64.43	80.92	24.98
Merged-chr2-59160229-3	chr2	59159719	59160719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	464.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	120.13	71.88	67.52	97.16	63.91	61.09	86.61	117.17	41.84
Merged-chr7-141328110-3	chr7	141327599	141328599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	-31.0	NM_001141950	71448.0	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	218.52	224.86	181.29	221.98	186.6	213.81	219.69	221.08	118.66
Merged-chr3-108085443-3	chr3	108084944	108085944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-18.0	NM_001289720	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	48.05	27.19	22.2	41.83	28.92	50.64	44.36	55.27	29.35
Merged-chr11-116146266-3	chr11	116145760	116146760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172571, intron 26 of 30)	intron (NM_172571, intron 26 of 30)	-7392.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	72.65	84.78	82.32	98.51	117.56	94.85	77.1	74.73	50.59
Merged-chr5-99216880-3	chr5	99216385	99217385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145839)	TTS (NM_145839)	36042.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	36.61	36.86	32.37	24.96	10.26	20.09	23.24	22.11	32.48
Merged-chr11-48800346-3	chr11	48799820	48800820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008143)	promoter-TSS (NM_008143)	-40.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	320.35	323.93	226.61	331.96	316.29	225.86	373.89	377.61	146.76
Merged-chr15-59650624-3	chr15	59650119	59651119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1965.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	163.61	141.92	96.2	197.02	157.68	135.84	166.88	129.55	111.17
Merged-chr7-145284007-3	chr7	145283528	145284528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-17.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	323.21	244.68	185.92	364.35	258.45	258.02	363.33	313.05	136.15
Merged-chr3-101604716-3	chr3	101604204	101605204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144900)	promoter-TSS (NM_144900)	3.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	301.47	254.81	238.64	287.43	246.78	228.28	222.86	224.62	155.51
Merged-chr5-100416293-3	chr5	100415784	100416784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-50.0	NM_001359332	69162.0	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	124.71	127.64	75.85	161.26	122.23	144.68	121.46	96.39	63.08
Merged-chrX-48146428-3	chrX	48145930	48146930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028773)	promoter-TSS (NM_028773)	-6.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	48.62	62.67	45.32	43.86	65.31	52.25	72.88	59.69	34.97
Merged-chr3-58520481-3	chr3	58519987	58520987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-5334.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	90.38	89.39	58.27	102.56	71.38	44.21	50.7	56.6	48.09
Merged-chr2-37359263-3	chr2	37358775	37359775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026176)	promoter-TSS (NM_026176)	57.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	81.8	91.7	73.07	66.12	65.31	96.45	95.06	88.43	74.32
Merged-chr5-88565640-5	chr5	88565066	88566066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	CpG	526.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	250.56	184.77	262.69	236.83	165.14	206.57	287.28	158.74	136.77
Merged-chr11-75550039-3	chr11	75549534	75550534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-1395.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	450.21	299.97	208.11	400.78	260.31	204.97	272.5	301.56	138.65
Merged-chr6-100143951-3	chr6	100143452	100144452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143406.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	17.16	10.14	11.1	23.62	17.73	30.54	20.07	11.94	18.11
Merged-chr6-108532155-3	chr6	108531644	108532644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	42401.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	139.58	102.29	98.97	178.13	90.97	90.02	133.08	106.56	38.1
Merged-chr3-133545191-3	chr3	133544717	133545717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	-827.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	201.36	170.49	181.29	192.29	148.82	171.21	147.87	126.46	140.52
Merged-chr11-69785020-3	chr11	69784518	69785518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029348)	TTS (NM_029348)	10919.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	23.45	17.97	20.35	22.94	16.79	30.54	23.24	11.05	8.74
Merged-chr9-32539456-3	chr9	32538955	32539955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1997.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	109.26	70.5	46.25	118.08	34.99	54.66	55.98	42.01	55.58
Merged-chr6-51469984-3	chr6	51469496	51470496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182650)	promoter-TSS (NM_182650)	-102.0	NM_016806	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	223.67	245.14	178.52	227.38	272.44	189.69	217.57	241.87	120.53
Merged-chr5-115559399-3	chr5	115558897	115559897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-70.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	205.37	136.85	149.84	205.79	142.29	170.4	184.83	155.64	120.53
Merged-chr13-94285412-3	chr13	94284888	94285888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-107.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	189.35	141.92	123.02	207.81	149.75	117.35	192.23	112.75	66.82
Merged-chr17-43554009-1	chr17	43553509	43554509	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-10370.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	14.3	5.53	3.7	10.8	17.26	17.68	5.28	7.07	6.25
Merged-chr12-108937697-2	chr12	108937191	108938191	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	43419.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	50.34	44.24	6.47	88.39	90.97	102.08	96.11	64.56	60.58
Merged-chr9-90258279-3	chr9	90257782	90258782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	12487.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	110.98	137.77	87.87	138.99	104.5	110.12	162.65	148.57	75.57
Merged-chr9-123769636-3	chr9	123769142	123770142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	2431.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	60.07	56.22	40.7	57.35	49.45	73.14	36.97	30.51	35.6
Merged-chr18-5764894-3	chr18	5764402	5765402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	172255.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	120.13	127.18	91.57	93.79	56.45	49.83	104.56	101.7	47.46
Merged-chr5-120613369-2	chr5	120612864	120613864	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029096)	promoter-TSS (NM_029096)	234.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	235.11	197.22	159.09	201.74	156.28	170.4	186.94	175.98	144.89
Merged-chr10-82859190-3	chr10	82858697	82859697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-9.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	465.65	429.91	178.52	508.74	471.17	312.67	434.09	565.53	232.32
Merged-chr2-165320668-3	chr2	165320162	165321162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001302752, exon 1 of 21)	5' UTR (NM_001302752, exon 1 of 21)	164.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	238.55	191.23	243.26	224.01	189.4	200.14	217.57	248.5	143.64
Merged-chrX-142190523-3	chrX	142190019	142191019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007576, intron 1 of 19)	intron (NM_001007576, intron 1 of 19)	6417.0	NM_001007576	245650.0	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	10.87	14.75	12.95	14.84	7.93	30.54	15.84	19.9	7.49
Merged-chr9-70585382-3	chr9	70584889	70585889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152142, intron 15 of 19)	intron (NR_152142, intron 15 of 19)	42674.0	NM_025690	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	6.86	5.53	1.85	10.12	8.86	8.04	11.62	7.52	9.99
Merged-chr1-39503354-3	chr1	39502851	39503851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24596.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	54.92	46.54	36.07	54.65	40.59	45.01	43.3	41.12	28.1
Merged-chr12-52398073-3	chr12	52397584	52398584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82525.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	34.32	23.5	31.45	31.04	26.59	38.58	36.97	34.93	37.47
Merged-chr15-58140968-1	chr15	58140468	58141468	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	-398.0	NM_001326602	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	74.37	67.27	70.3	72.87	56.91	62.7	81.33	57.04	40.59
Merged-chr8-120113583-1	chr8	120113083	120114083	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163762)	promoter-TSS (NM_001163762)	-569.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	423.89	403.65	259.91	388.64	337.29	232.29	382.34	467.81	174.87
Merged-chr5-118404604-3	chr5	118404087	118405087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-156132.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	24.6	31.79	24.05	68.15	55.51	45.82	52.81	45.1	23.73
Merged-chr14-30549178-3	chr14	30548747	30549747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009388, exon 1 of 14)	5' UTR (NM_009388, exon 1 of 14)	116.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	164.75	152.52	145.22	155.19	138.55	205.77	177.44	200.74	114.29
Merged-chr4-141953038-3	chr4	141952546	141953546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 12 of 31)	MER2|DNA|TcMar-Tigger	-29946.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	243.12	201.36	122.09	232.1	146.02	161.56	204.9	200.74	121.16
Merged-chr5-140597332-3	chr5	140596814	140597814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10027.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	112.69	77.87	48.1	175.43	125.02	74.75	134.14	116.73	29.35
Merged-chr15-78257405-3	chr15	78256907	78257907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	RSINE1|SINE|B4	12596.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	170.47	112.89	73.07	157.88	105.43	140.66	152.09	156.53	94.93
Merged-chr19-4510300-3	chr19	4509816	4510816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-156.0	NM_001162946	18563.0	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	22.88	23.04	12.02	26.31	18.66	15.27	29.57	26.09	8.74
Merged-chr4-59783435-2	chr4	59782940	59783940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013577, intron 1 of 4)	CpG	415.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	161.89	157.13	158.17	181.5	183.34	146.29	168.99	174.66	79.32
Merged-chr1-171346276-3	chr1	171345769	171346769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012049)	promoter-TSS (NM_012049)	594.0	NM_011070	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	259.71	202.75	76.77	203.76	178.21	125.39	154.2	175.54	72.45
Merged-chr1-16228421-3	chr1	16227914	16228914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025303)	TTS (NM_025303)	122532.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	169.9	218.41	132.27	157.21	139.02	165.58	196.45	183.06	170.5
Merged-chr16-75887371-3	chr16	75886857	75887857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	21909.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	72.65	71.42	47.17	62.07	42.45	50.64	77.1	65.0	58.71
Merged-chr3-116662371-1	chr3	116661871	116662871	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 1 of 11)	CpG	306.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	256.85	208.27	230.31	242.22	191.27	190.5	216.52	172.0	116.79
Merged-chr13-52078740-3	chr13	52078226	52079226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18015.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	77.8	44.7	54.57	82.99	65.78	80.38	78.16	57.92	49.34
Merged-chr4-47315649-3	chr4	47315130	47316130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37592.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	103.54	58.98	74.0	116.05	65.78	64.3	74.99	60.13	36.85
Merged-chr11-80043582-3	chr11	80043066	80044066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1M8|LINE|L1	37425.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	154.45	140.08	59.2	141.69	83.97	68.32	105.62	118.5	77.44
Merged-chr6-120822823-3	chr6	120822325	120823325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007510)	promoter-TSS (NM_007510)	-127.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	362.68	300.89	175.74	340.73	360.14	305.44	249.26	329.41	169.87
Merged-chr17-53587252-3	chr17	53586754	53587754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	intron (NM_001190846, intron 1 of 17)	3128.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	56.06	45.62	20.35	55.33	34.99	42.6	65.48	46.43	35.6
Merged-chr15-66919580-3	chr15	66919073	66920073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018865, exon 5 of 5)	3' UTR (NM_018865, exon 5 of 5)	28180.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	1.14	3.23	0.0	2.02	3.27	3.22	4.22	0.0	5.0
Merged-chr2-124755448-3	chr2	124754948	124755948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101867.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	48.05	69.58	64.75	51.28	36.39	55.46	48.58	52.62	39.35
Merged-chr14-61439497-1	chr14	61438997	61439997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008466, intron 1 of 16)	CpG	450.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	297.47	176.48	198.87	229.4	127.36	124.59	253.48	116.73	114.29
Merged-chr12-84023280-3	chr12	84022786	84023786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	13784.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	66.93	60.82	20.35	67.47	69.98	65.11	41.19	55.27	38.72
Merged-chr1-172126730-3	chr1	172126236	172127236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159525)	promoter-TSS (NM_001159525)	-19.0	NM_001356513	19298.0	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	42.9	32.72	23.12	37.11	32.19	38.58	46.47	39.35	23.73
Merged-chr12-55824222-3	chr12	55823727	55824727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2711.0	NM_001286263	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	6.29	6.45	7.4	5.4	5.13	3.22	8.45	9.73	8.74
Merged-chr7-25269874-3	chr7	25269367	25270367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2168.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	198.5	146.07	132.27	236.83	167.01	118.96	152.09	161.83	87.43
Merged-chr16-43951816-3	chr16	43951298	43952298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	27252.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	52.63	69.12	37.92	55.33	39.19	49.03	40.14	37.58	54.96
Merged-chr9-70421577-3	chr9	70421083	70422083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007630)	promoter-TSS (NM_007630)	-29.0	NM_007630	12442.0	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	15.45	24.42	6.47	8.77	11.2	8.04	21.12	15.92	7.49
Merged-chr7-19345375-3	chr7	19344879	19345879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127324, intron 1 of 6)	CpG	308.0	NM_007948	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	19.45	16.59	5.55	18.89	8.4	11.25	28.52	17.69	21.23
Merged-chr14-22019599-5	chr14	22019113	22020113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028275)	promoter-TSS (NM_028275)	-99.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	220.81	279.7	212.74	217.26	250.05	184.87	241.87	256.01	129.9
Merged-chr12-117479191-3	chr12	117478683	117479683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37296.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	70.93	52.07	33.3	59.38	32.19	45.01	51.75	53.94	51.21
Merged-chr4-10874046-3	chr4	10873520	10874520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-478.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	158.46	150.22	95.27	153.84	125.02	123.78	137.3	109.66	90.56
Merged-chr17-35972299-2	chr17	35971799	35972799	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145487)	TTS (NM_145487)	-2549.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	4.58	4.15	1.85	25.64	18.19	22.51	27.46	33.16	16.24
Merged-chr3-95139753-3	chr3	95139256	95140256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106175).2	promoter-TSS (NR_106175).2	-570.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	34.32	34.56	38.85	41.16	45.25	53.05	71.82	66.77	51.84
Merged-chr7-34302089-3	chr7	34301549	34302549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16440.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	20.59	31.79	26.82	20.24	19.13	34.56	33.8	17.69	19.98
Merged-chr13-108044450-3	chr13	108043944	108044944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-30.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	133.86	119.34	159.09	134.94	102.63	133.43	167.93	147.24	142.39
Merged-chr6-72141374-3	chr6	72140869	72141869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-18172.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	201.93	132.25	110.99	217.26	117.56	117.35	199.62	200.74	106.79
Merged-chr17-57275667-3	chr17	57275201	57276201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3399.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	139.58	110.59	130.42	132.24	90.97	97.26	120.41	118.06	64.33
Merged-chr12-69157645-3	chr12	69157128	69158128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009093)	TTS (NM_009093)	1558.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	78.94	118.88	87.87	84.34	77.44	75.56	79.21	81.36	49.34
Merged-chr4-3648436-3	chr4	3647940	3648940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8066.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	217.38	221.64	142.44	207.14	162.81	138.25	218.63	272.82	130.53
Merged-chr2-168540041-3	chr2	168539541	168540541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	L2|LINE|L2	50324.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	86.38	88.47	87.87	136.29	97.03	147.09	95.06	51.29	36.22
Merged-chr7-110710767-3	chr7	110710248	110711248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-57458.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	9.72	14.28	12.95	39.13	24.72	49.03	38.02	53.5	26.23
Merged-chr7-43346376-5	chr7	43345877	43346877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-4964.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	31.46	34.56	36.07	39.81	27.99	32.15	49.64	42.89	38.1
Merged-chr16-33062419-3	chr16	33061900	33062900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172823)	promoter-TSS (NM_172823)	-121.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	51.48	36.4	43.47	52.63	27.06	56.27	35.91	37.58	37.47
Merged-chr7-16311711-3	chr7	16311256	16312256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	2173.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	146.45	94.92	111.92	116.05	74.17	87.61	149.98	115.85	78.07
Merged-chr15-50698296-1	chr15	50697796	50698796	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190753.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	55.49	49.76	17.57	82.99	51.32	28.94	53.87	60.13	24.36
Merged-chr5-108131968-3	chr5	108131459	108132459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028481)	promoter-TSS (NM_028481)	661.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	306.62	402.73	270.09	316.44	434.32	299.81	290.45	363.02	186.11
Merged-chr3-69669738-3	chr3	69669237	69670237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-52318.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	114.98	158.05	87.87	143.04	174.01	130.21	196.45	217.55	128.03
Merged-chr5-124445359-3	chr5	124444868	124445868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-131.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	82.95	57.14	52.72	90.41	68.11	83.59	104.56	82.69	54.33
Merged-chr10-7681077-3	chr10	7680581	7681581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	54.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	379.84	315.18	282.11	377.17	236.99	255.6	346.43	216.66	163.63
Merged-chr9-59751101-5	chr9	59750564	59751564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172071)	promoter-TSS (NM_001172071)	-110.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	167.61	105.52	128.57	183.52	111.96	173.62	138.36	168.02	114.29
Merged-chr7-99435007-3	chr7	99434512	99435512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-30992.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	28.6	18.43	22.2	31.04	24.26	23.31	20.07	20.78	11.24
Merged-chr5-105415683-3	chr5	105415199	105416199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033550)	promoter-TSS (NM_001033550)	-76.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	176.19	153.44	83.25	153.16	127.36	110.12	116.18	80.92	22.48
Merged-chr16-17891795-3	chr16	17891314	17892314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010048)	promoter-TSS (NM_010048)	-86.0	NM_001109750	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	97.25	94.0	82.32	99.86	100.77	85.2	119.35	74.28	44.97
Merged-chr2-12406887-3	chr2	12406387	12407387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 2 of 13)	intron (NM_001355537, intron 2 of 13)	12573.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	8.01	9.22	16.65	11.47	11.66	9.65	15.84	11.5	11.24
Merged-chr7-45628932-3	chr7	45628443	45629443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1406.0	NM_028544	69903.0	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	12.01	5.99	6.47	20.24	3.27	2.41	9.51	7.52	1.87
Merged-chr3-88138419-3	chr3	88137928	88138928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3944.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	391.28	344.21	246.04	379.87	343.35	284.54	350.65	403.7	155.51
Merged-chr9-85357592-3	chr9	85357110	85358110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30460.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	85.81	85.25	46.25	93.11	80.71	61.89	85.55	87.11	31.85
Merged-chr2-70661445-3	chr2	70660936	70661936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027352)	promoter-TSS (NM_027352)	-73.0	NR_027343	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	171.04	132.25	96.2	192.29	113.83	114.94	132.02	83.57	87.43
Merged-chr3-96220888-3	chr3	96220379	96221379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	1.0	NM_175662	319176.0	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	273.44	264.03	176.67	263.14	272.91	206.57	239.75	336.05	186.73
Merged-chr2-38481323-3	chr2	38480825	38481825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30372.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	75.51	59.44	62.9	99.18	42.45	84.4	78.16	68.98	71.2
Merged-chr11-116843528-3	chr11	116843057	116844057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033398)	promoter-TSS (NM_033398)	42.0	NM_028865	74319.0	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	266.58	208.27	231.24	232.1	185.67	182.46	195.39	221.53	142.39
Merged-chr5-122392312-3	chr5	122391802	122392802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 1 of 6)	intron (NM_019824, intron 1 of 6)	424.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	327.79	392.13	295.06	349.5	310.23	314.28	323.19	405.91	212.96
Merged-chr10-42278152-3	chr10	42277639	42278639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-1005	-1397.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	241.41	162.2	157.24	248.97	167.48	185.68	221.8	161.39	76.19
Merged-chr9-119444940-3	chr9	119444437	119445437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172456)	promoter-TSS (NM_172456)	-23.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	30.89	30.87	43.47	25.64	20.99	40.19	25.35	21.22	31.23
Merged-chr7-28765359-3	chr7	28764870	28765870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306222, intron 1 of 5)	L2a|LINE|L2	1274.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	409.02	444.2	227.54	334.66	259.38	237.12	335.87	399.72	170.5
Merged-chr11-83616761-3	chr11	83616253	83617253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-23666.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	35.47	30.41	18.5	93.11	77.91	65.11	55.98	71.19	21.23
Merged-chr7-43920775-3	chr7	43920260	43921260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13011.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	171.04	190.3	176.67	142.37	112.9	147.9	133.08	138.4	106.79
Merged-chr11-69417706-3	chr11	69417222	69418222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	308.91	203.67	110.99	311.72	209.46	176.03	280.95	298.91	109.29
Merged-chr2-32081510-3	chr2	32081016	32082016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151493, intron 2 of 5)	intron (NR_151493, intron 2 of 5)	2189.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	119.56	111.05	81.4	96.48	72.31	106.1	119.35	177.75	75.57
Merged-chr4-150349840-3	chr4	150349323	150350323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	(TCC)n|Simple_repeat|Simple_repeat	67907.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	32.61	28.11	12.02	26.99	29.86	34.56	16.9	28.3	18.74
Merged-chr12-10390781-3	chr12	10390281	10391281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023697)	promoter-TSS (NM_023697)	1.0	NM_023697	105014.0	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	156.17	192.61	134.12	176.78	177.74	141.47	161.6	152.11	81.19
Merged-chr18-50024212-3	chr18	50023738	50024738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-6746.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	104.11	117.04	46.25	72.87	64.84	71.54	48.58	55.27	46.22
Merged-chr8-111643472-3	chr8	111642995	111643995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	52.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	334.08	308.73	237.71	255.04	309.76	229.08	280.95	286.97	153.01
Merged-chr3-90491007-3	chr3	90490503	90491503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	10.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	135.58	112.89	91.57	178.13	160.48	89.22	181.66	181.73	81.19
Merged-chr2-148498047-1	chr2	148497547	148498547	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54512.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	16.59	14.75	32.37	10.8	7.93	12.06	9.51	3.54	13.12
Merged-chr6-30048424-2	chr6	30047944	30048944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164226, intron 1 of 11)	CpG	456.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	187.63	135.01	192.39	149.79	117.56	129.41	136.25	82.24	92.43
Merged-chr4-149485252-3	chr4	149484752	149485752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	-14.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	80.66	56.68	64.75	69.5	75.57	82.79	79.21	70.3	48.71
Merged-chr11-96829541-3	chr11	96829049	96830049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-47.0	NM_001130450	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	181.91	164.04	157.24	118.08	78.84	158.35	156.32	127.79	103.05
Merged-chr6-128834632-3	chr6	128834144	128835144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-8329.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	32.61	37.32	15.72	36.43	19.59	48.23	16.9	24.76	17.49
Merged-chr2-129338435-3	chr2	129337933	129338933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28461.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	90.38	71.88	40.7	66.12	48.52	73.95	82.38	93.3	76.19
Merged-chr5-121220179-3	chr5	121219682	121220682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181421)	promoter-TSS (NM_181421)	-37.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	26.89	19.81	36.07	31.04	18.66	36.97	31.69	22.11	18.11
Merged-chr6-97294261-3	chr6	97293768	97294768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41488.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	46.34	42.39	22.2	49.93	28.46	15.27	40.14	53.5	17.49
Merged-chr17-86162098-3	chr17	86161591	86162591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5694.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	4.58	4.15	2.77	2.7	3.73	4.02	1.06	1.77	5.0
Merged-chr16-65562717-3	chr16	65562228	65563228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026879)	promoter-TSS (NM_026879)	-31.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	128.71	138.24	45.32	164.63	147.88	102.88	118.29	130.44	56.21
Merged-chr9-44335166-2	chr9	44334652	44335652	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010436, exon 1 of 1)	exon (NM_010436, exon 1 of 1)	437.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	97.82	85.71	87.87	101.88	79.31	115.75	100.34	80.47	81.19
Merged-chr16-78236976-3	chr16	78236502	78237502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18452.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	60.07	53.45	14.8	166.66	154.41	79.58	130.97	177.75	47.46
Merged-chr11-79704531-3	chr11	79704025	79705025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7444.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	311.77	239.61	178.52	240.87	200.6	194.52	253.48	230.81	149.26
Merged-chr17-56935575-3	chr17	56935079	56936079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022328)	promoter-TSS (NM_022328)	-191.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	114.98	56.68	49.95	116.05	46.65	55.46	122.52	58.37	43.09
Merged-chr10-60958165-3	chr10	60957678	60958678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-2545.0	NR_130327	100316671.0		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	29.17	19.81	9.25	62.75	52.25	36.97	47.53	34.49	19.36
Merged-chr11-3155966-2	chr11	3155485	3156485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 12 of 32)	intron (NM_030207, intron 12 of 32)	31964.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	59.49	103.22	108.22	107.28	131.56	170.4	0.0	0.44	170.5
Merged-chr9-105408264-1	chr9	105407764	105408764	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	7476.0	NM_001164828	66595.0	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1	protein-coding	5.15	5.53	16.65	6.07	0.93	3.22	24.29	32.28	30.6
Merged-chrX-12591583-3	chrX	12591084	12592084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	3825.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	88.1	75.11	52.72	74.22	52.25	41.8	51.75	53.5	31.23
Merged-chr12-25216977-3	chr12	25216490	25217490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	87816.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	37.76	19.81	17.57	28.34	20.53	20.09	42.25	27.41	26.85
Merged-chr11-54091868-3	chr11	54091350	54092350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9074.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	148.16	119.34	75.85	168.0	100.77	106.9	156.32	146.8	76.82
Merged-chr2-45185408-3	chr2	45184907	45185907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67965.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	20.59	29.95	7.4	41.83	33.59	21.7	31.69	34.49	22.48
Merged-chr7-104505887-2	chr7	104505383	104506383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	1966.0	NM_199146	209387.0	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	85.81	80.18	60.12	49.25	49.92	58.68	3.17	5.31	1.87
Merged-chr11-53532405-3	chr11	53531900	53532900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252333, intron 2 of 9)	intron (NM_001252333, intron 2 of 9)	12212.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	88.1	84.32	68.45	107.95	64.38	64.3	86.61	86.66	66.2
Merged-chrX-8132113-3	chrX	8131592	8132592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028542, intron 1 of 8)	intron (NM_028542, intron 1 of 8)	766.0	NM_001290783	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	135.0	114.74	105.44	130.22	114.76	106.9	89.78	130.44	61.83
Merged-chr4-139640959-1	chr4	139640459	139641459	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175438, intron 9 of 14)	intron (NM_175438, intron 9 of 14)	-3083.0	NR_105987	102465617.0		NR_105987	ENSMUSG00000098569	Mir7020	Gm27759|mmu-mir-7020	microRNA 7020	ncRNA	5.15	1.84	3.7	14.17	7.93	13.66	4.22	1.77	1.25
Merged-chr12-110933029-3	chr12	110932514	110933514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081057, exon 10 of 21)	exon (NM_001081057, exon 10 of 21)	43750.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	102.4	90.77	87.87	132.92	84.44	92.44	107.73	125.58	75.57
Merged-chr13-24393155-3	chr13	24392523	24393523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-22099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	18.88	13.36	18.5	18.22	6.53	14.47	16.9	15.48	15.61
Merged-chr6-91585682-1	chr6	91585182	91586182	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69647.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	2.86	1.84	4.62	0.0	4.2	3.22	1.06	1.77	0.0
Merged-chr1-134955999-3	chr1	134955494	134956494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081307)	promoter-TSS (NM_001081307)	-54.0	NM_001081307	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	45.19	38.25	33.3	43.86	39.65	35.37	46.47	34.05	13.74
Merged-chr11-79088206-3	chr11	79087709	79088709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28373.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	148.16	121.65	99.89	144.39	94.23	99.67	127.8	113.64	72.45
Merged-chr4-6365904-3	chr4	6365415	6366415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	CpG	235.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	493.11	460.32	291.36	587.0	500.1	393.86	445.71	551.38	207.97
Merged-chr11-69991008-3	chr11	69990520	69991520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019749)	promoter-TSS (NM_019749)	-350.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	238.55	248.82	165.57	259.09	217.39	204.16	256.65	320.57	113.04
Merged-chr18-5803131-3	chr18	5802624	5803624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	109.26	101.83	116.54	112.68	41.99	122.98	87.66	77.82	108.67
Merged-chrX-167229514-3	chrX	167229034	167230034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20316.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	87.52	71.42	49.02	54.65	30.79	53.85	68.65	91.09	38.72
Merged-chr1-184027212-3	chr1	184026664	184027664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	6834.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	74.94	50.23	62.9	70.17	41.52	40.19	72.88	81.8	56.21
Merged-chr2-148875602-3	chr2	148875092	148876092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009976)	promoter-TSS (NM_009976)	-80.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	50.34	49.3	43.47	48.58	40.12	79.58	65.48	51.29	41.22
Merged-chr13-23556206-3	chr13	23555684	23556684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145713)	TTS (NM_145713)	1152.0	NM_145713	14957.0	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	96.68	114.27	105.44	87.71	84.9	92.44	118.29	148.13	91.81
Merged-chr12-100110213-3	chr12	100109728	100110728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2103.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	184.77	180.17	116.54	204.44	203.4	226.67	177.44	232.58	101.17
Merged-chr2-128719521-3	chr2	128719024	128720024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	20609.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	164.75	130.86	88.8	137.64	92.37	127.0	134.14	152.99	82.44
Merged-chr1-30873842-3	chr1	30873319	30874319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10563.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	334.65	229.93	320.96	344.11	220.66	242.74	339.04	141.05	180.49
Merged-chr4-139193468-1	chr4	139192968	139193968	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	569.0	NM_001037761	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	292.89	286.61	290.44	218.61	197.8	243.55	313.69	290.5	233.57
Merged-chr12-55299550-3	chr12	55299046	55300046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-3091.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	46.91	43.77	23.12	41.83	37.32	32.15	43.3	34.49	24.36
Merged-chr6-85451984-3	chr6	85451472	85452472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163427)	promoter-TSS (NM_001163427)	-2.0	NR_028081	73327.0	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	169.9	197.68	136.89	193.64	211.79	154.33	188.0	187.48	126.15
Merged-chr18-38443744-1	chr18	38443244	38444244	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 2 of 7)	intron (NM_001355749, intron 2 of 7)	24837.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	14.87	10.14	16.65	14.17	4.2	12.86	43.3	25.2	23.73
Merged-chr13-5774075-3	chr13	5773569	5774569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84023.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	19.45	12.44	15.72	24.29	23.33	22.51	17.96	10.61	9.99
Merged-chr11-20455235-3	chr11	20454747	20455747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-88006.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	10.3	8.75	5.55	7.42	7.46	3.22	9.51	4.42	7.49
Merged-chr2-30171529-3	chr2	30171112	30172112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007931)	promoter-TSS (NM_007931)	88.0	NM_007931	13804.0	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	101.25	99.07	124.87	139.67	86.3	107.71	110.9	72.52	81.19
Merged-chr11-58959279-3	chr11	58958778	58959778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2433.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	52.63	59.9	56.42	33.06	33.59	42.6	111.96	156.97	84.31
Merged-chr9-90235494-3	chr9	90234962	90235962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35307.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	188.78	116.12	95.27	237.5	106.83	107.71	143.64	109.22	86.81
Merged-chr15-6623871-3	chr15	6623380	6624380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	30423.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	124.71	159.89	97.12	120.77	74.64	110.12	94.0	98.16	83.69
Merged-chr11-97703267-3	chr11	97702772	97703772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-162.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	206.51	205.51	122.09	170.03	154.41	184.07	140.47	212.24	124.28
Merged-chr11-100619653-3	chr11	100619164	100620164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019795, exon 1 of 14)	5' UTR (NM_019795, exon 1 of 14)	504.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	348.38	210.58	220.14	274.61	162.34	184.87	272.5	267.07	159.88
Merged-chr1-180196046-3	chr1	180195516	180196516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359268)	promoter-TSS (NM_001359268)	4.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	36.61	33.64	47.17	51.28	31.72	28.94	53.87	41.12	21.86
Merged-chr13-101879902-3	chr13	101879399	101880399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111682.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	26.31	15.21	12.95	15.52	8.86	8.04	25.35	15.92	2.5
Merged-chr11-54812946-3	chr11	54812453	54813453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6966.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	129.86	67.74	25.9	88.39	68.58	28.94	32.74	31.84	12.49
Merged-chr19-9975102-3	chr19	9974616	9975616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	269.44	221.18	122.09	306.32	247.25	180.05	195.39	237.0	101.8
Merged-chr5-124021926-3	chr5	124021423	124022423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	RSINE1|SINE|B4	10337.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	176.19	127.18	114.69	212.54	151.15	135.04	226.02	259.55	92.43
Merged-chr14-24487071-3	chr14	24486584	24487584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081247)	promoter-TSS (NM_001081247)	-26.0	NM_001081247	218832.0	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	39.47	31.79	28.67	40.48	36.85	44.21	53.87	43.77	27.48
Merged-chr7-81571232-3	chr7	81570756	81571756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004185)	promoter-TSS (NM_001004185)	-36.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	152.74	143.3	131.34	125.5	116.16	106.1	109.84	77.82	94.93
Merged-chr8-88274879-2	chr8	88274372	88275372	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	2469.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	6.86	2.76	0.0	16.19	18.19	24.11	17.96	24.76	13.74
Merged-chr10-120209638-5	chr10	120209159	120210159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026617, intron 1 of 6)	L1MB2|LINE|L1	833.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	224.82	242.37	98.97	175.43	162.34	73.14	201.73	313.94	96.8
Merged-chr11-84870848-3	chr11	84870333	84871333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131197)	promoter-TSS (NR_131197)	-90.0	NR_131197	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	393.0	361.25	320.03	402.13	383.0	324.73	296.79	401.49	280.41
Merged-chr11-54988985-3	chr11	54988493	54989493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 19 of 24)	L1MB3|LINE|L1	-26053.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	44.62	39.17	49.95	46.56	33.12	57.87	65.48	95.95	48.09
Merged-chr11-75054885-3	chr11	75054370	75055370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11121.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	160.18	132.71	94.35	149.11	99.37	143.88	137.3	161.39	69.32
Merged-chr7-44848697-1	chr7	44848197	44849197	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	382.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	82.95	52.99	69.37	82.99	67.64	79.58	119.35	100.81	28.1
Merged-chr16-94246149-3	chr16	94245638	94246638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	44153.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	135.0	141.92	91.57	169.35	152.08	108.51	159.48	188.81	78.69
Merged-chr12-3310056-3	chr12	3309546	3310546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016676)	promoter-TSS (NM_016676)	-77.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	263.14	279.24	246.96	241.55	239.79	189.69	268.27	225.06	149.89
Merged-chr8-121950372-6	chr8	121949802	121950802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110100)	promoter-TSS (NM_001110100)	-190.0	NM_016812	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	143.01	132.25	136.89	120.1	122.23	117.35	125.69	145.47	99.92
Merged-chr10-30600669-3	chr10	30600180	30601180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028604)	promoter-TSS (NM_028604)	20.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	40.04	35.94	36.07	56.68	31.26	45.01	49.64	31.84	30.6
Merged-chr17-13683998-3	chr17	13683509	13684509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76532.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	14.3	6.91	9.25	9.45	3.27	0.0	15.84	14.15	8.74
Merged-chr5-23787645-3	chr5	23787147	23788147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177323)	promoter-TSS (NM_177323)	-64.0	NM_177323	72772.0	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	28.03	28.57	31.45	27.66	20.99	32.15	25.35	29.63	24.36
Merged-chr2-24977276-3	chr2	24976772	24977772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	1239.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	149.31	134.09	61.97	149.79	99.37	60.28	120.41	111.43	51.84
Merged-chr9-65075338-3	chr9	65074833	65075833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028906, intron 17 of 20)	intron (NM_028906, intron 17 of 20)	-26153.0	NM_020043	56741.0	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	29.17	44.7	46.25	29.01	33.12	45.01	29.57	31.84	33.72
Merged-chr15-9430073-3	chr15	9429571	9430571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5957.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	9.72	4.15	6.47	2.7	3.27	3.22	8.45	4.42	4.37
Merged-chr19-46511463-3	chr19	46510969	46511969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9821.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	315.77	255.74	156.32	320.49	202.46	151.92	248.2	261.76	126.78
Merged-chr6-17065163-1	chr6	17064663	17065663	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207176)	promoter-TSS (NM_207176)	14.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	9.72	5.53	0.0	8.1	10.26	0.0	4.22	9.29	5.0
Merged-chr4-129672653-4	chr4	129672152	129673152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008468, intron 1 of 13)	CpG	115.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	194.5	196.75	173.89	175.43	198.73	208.98	190.11	162.72	130.53
Merged-chr8-71382093-3	chr8	71381595	71382595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-143.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	215.66	172.79	187.77	193.64	147.42	143.07	158.43	122.04	102.42
Merged-chr1-93478934-3	chr1	93478436	93479436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-19.0	NM_133808	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	437.05	338.68	287.66	344.78	244.92	272.48	299.96	292.27	192.35
Merged-chr2-16183292-3	chr2	16182794	16183794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	MER44D|DNA|TcMar-Tigger	-173010.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	34.9	27.65	13.87	21.59	28.46	22.51	20.07	27.41	19.36
Merged-chr19-18647059-3	chr19	18646576	18647576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145497, intron 8 of 8)	intron (NM_145497, intron 8 of 8)	15060.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	103.54	65.89	41.62	122.8	96.57	84.4	48.58	49.08	19.98
Merged-chr7-28372831-3	chr7	28372345	28373345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-183.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	188.78	140.54	86.02	161.93	91.9	113.33	101.39	131.32	108.04
Merged-chr9-40807817-3	chr9	40807330	40808330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6557.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	122.42	103.22	61.97	136.29	90.5	95.65	154.2	156.53	83.69
Merged-chr6-137558992-3	chr6	137558486	137559486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12023.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	45.19	49.3	37.0	66.12	30.32	37.78	23.24	13.27	7.49
Merged-chr7-19303927-3	chr7	19303424	19304424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6121.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	11.44	3.69	0.92	10.12	2.8	4.82	9.51	1.77	1.25
Merged-chr15-64276490-3	chr15	64276006	64277006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	36167.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	31.46	34.1	31.45	26.99	17.73	34.56	39.08	19.46	32.48
Merged-chr17-24669633-3	chr17	24669143	24670143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183149)	promoter-TSS (NM_183149)	-44.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	253.42	206.89	205.34	212.54	167.01	180.05	168.99	156.97	118.04
Merged-chr1-181016692-3	chr1	181016203	181017203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	866.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	276.87	206.89	137.82	279.33	172.14	169.6	210.18	301.12	113.04
Merged-chr16-32396398-3	chr16	32395899	32396899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4107.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	78.37	47.92	74.92	41.16	36.85	40.19	35.91	40.24	29.98
Merged-chr12-36053815-2	chr12	36053314	36054314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11336.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	69.79	55.29	35.15	100.53	73.71	49.83	6.34	5.75	2.5
Merged-chr11-58103977-3	chr11	58103474	58104474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	4.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	223.67	237.76	225.69	205.11	219.73	204.16	164.76	162.72	119.28
Merged-chr1-36308221-3	chr1	36307740	36308740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	507.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	162.46	169.11	105.44	188.92	155.81	131.82	133.08	110.98	88.68
Merged-chr9-64092317-3	chr9	64091833	64092833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11572.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	45.76	29.95	7.4	66.8	30.79	24.11	38.02	24.32	11.24
Merged-chr4-53124852-3	chr4	53124336	53125336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	L3|LINE|CR1	35059.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	161.32	154.82	104.52	182.17	136.69	135.04	167.93	184.38	81.81
Merged-chr11-16956676-3	chr11	16956157	16957157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5247.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	52.06	68.2	28.67	38.46	28.46	40.99	60.2	54.39	38.1
Merged-chr16-91728730-3	chr16	91728220	91729220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	82.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	137.86	128.56	129.49	148.44	111.03	129.41	144.7	143.26	79.94
Merged-chr19-6164349-3	chr19	6163832	6164832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028967)	promoter-TSS (NM_028967)	-107.0	NM_001356604	74481.0	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	55.49	54.83	86.95	70.17	51.78	72.34	66.54	70.75	39.97
Merged-chr17-8868072-3	chr17	8867573	8868573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	18088.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	20.59	15.67	14.8	23.62	16.33	16.88	13.73	5.75	6.25
Merged-chr10-96686288-3	chr10	96685799	96686799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69298.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	42.9	30.87	24.05	69.5	27.52	49.83	43.3	44.22	43.72
Merged-chr3-58414627-3	chr3	58414112	58415112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081229)	promoter-TSS (NM_001081229)	-108.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	332.94	319.78	221.99	294.85	293.9	218.63	305.24	279.01	169.25
Merged-chr8-126517351-3	chr8	126516861	126517861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42296.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	39.47	47.0	21.27	49.93	49.45	54.66	50.7	45.1	31.85
Merged-chr4-141994185-3	chr4	141993657	141994657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	GA-rich|Low_complexity|Low_complexity	11165.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	24.6	16.13	22.2	21.59	11.66	42.6	27.46	17.69	23.11
Merged-chr11-31733138-3	chr11	31732635	31733635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61273.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	180.77	118.88	92.5	29.01	22.86	15.27	180.61	190.57	108.67
Merged-chr5-147894873-3	chr5	147894368	147895368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027872)	promoter-TSS (NM_027872)	-53.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	191.64	209.66	156.32	127.52	139.95	145.49	158.43	213.57	133.65
Merged-chr14-31597680-3	chr14	31597177	31598177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20294.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	24.6	24.88	9.25	20.24	21.46	20.9	67.6	79.59	13.74
Merged-chr3-89727263-3	chr3	89726764	89727764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357958, intron 1 of 14)	intron (NM_001357958, intron 1 of 14)	-3454.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	22.31	7.83	12.95	8.77	6.06	6.43	10.56	6.19	6.87
Merged-chr10-87696702-1	chr10	87696202	87697202	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161563.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	1.72	5.53	0.0	4.05	1.87	3.22	44.36	35.82	33.72
Merged-chr7-88315089-1	chr7	88314589	88315589	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	37004.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	20.59	24.88	32.37	27.66	9.8	19.29	15.84	22.99	16.24
Merged-chr12-108651258-4	chr12	108650825	108651825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 3 of 14)	intron (NM_001163396, intron 3 of 14)	-7295.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	68.07	76.49	62.9	113.35	106.83	107.71	161.6	156.09	101.8
Merged-chr16-55631795-3	chr16	55631292	55632292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137061.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	13.16	5.99	4.62	8.77	7.46	6.43	8.45	8.4	5.0
Merged-chr9-42141780-3	chr9	42141266	42142266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17469.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	15.45	20.74	4.62	15.52	11.66	5.63	14.79	7.52	14.36
Merged-chr17-34655813-3	chr17	34655318	34656318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017406)	TTS (NM_017406)	8672.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	18.31	18.43	17.57	9.45	4.67	0.0	13.73	4.86	14.36
Merged-chr15-73148342-3	chr15	73147856	73148856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36591.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	96.11	67.27	45.32	96.48	56.91	41.8	66.54	60.58	34.35
Merged-chr18-88972082-1	chr18	88971582	88972582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_105777)	promoter-TSS (NR_105777)	52.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	14.3	17.51	6.47	17.54	10.26	19.29	24.29	19.9	18.74
Merged-chr15-34043260-3	chr15	34042776	34043776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39443.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	12.59	10.6	7.4	10.8	7.0	8.04	11.62	11.5	16.24
Merged-chr2-156523203-3	chr2	156522705	156523705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-24371.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	28.03	11.52	8.32	11.47	12.13	16.88	7.39	10.17	3.75
Merged-chr8-105170548-3	chr8	105170053	105171053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161457)	promoter-TSS (NM_001161457)	-121.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	61.78	54.83	92.5	58.7	51.78	68.32	40.14	43.77	64.33
Merged-chr17-29435598-3	chr17	29435085	29436085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-55460.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	232.83	158.97	139.67	88.39	44.32	40.19	106.67	112.75	41.84
Merged-chr4-152178046-3	chr4	152177551	152178551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-49.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	101.83	59.44	95.27	93.79	64.84	61.09	103.51	65.44	40.59
Merged-chr15-8992345-3	chr15	8991838	8992838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	MIRb|SINE|MIR	24389.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	44.05	62.21	39.77	45.21	31.72	35.37	30.63	57.04	26.23
Merged-chr13-20208268-3	chr13	20207745	20208745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	117738.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	53.77	74.19	69.37	69.5	72.78	61.89	58.09	71.19	23.11
Merged-chr8-122557897-3	chr8	122557388	122558388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6559.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	117.27	111.97	112.84	107.28	119.43	138.25	138.36	183.06	76.82
Merged-chr9-15301591-3	chr9	15301099	15302099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	8.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	122.99	143.76	72.15	133.59	115.23	102.08	129.91	130.88	60.58
Merged-chrX-37085406-3	chrX	37084909	37085909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026055)	promoter-TSS (NM_026055)	-187.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	64.64	82.48	48.1	51.95	76.04	55.46	74.99	61.02	44.97
Merged-chr14-103012720-3	chr14	103012234	103013234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	21069.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	9.15	9.68	1.85	8.77	6.53	4.82	14.79	7.96	13.12
Merged-chr16-16073537-3	chr16	16073043	16074043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	73308.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	111.55	155.28	65.67	85.69	107.3	94.04	95.06	140.61	66.82
Merged-chr1-182908561-3	chr1	182908076	182909076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46212.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	50.91	28.11	4.62	43.86	28.92	18.49	20.07	20.34	13.12
Merged-chr1-152903315-3	chr1	152902825	152903825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-679.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	378.7	369.09	235.86	332.64	258.91	226.67	293.62	291.39	178.61
Merged-chr17-31039818-3	chr17	31039316	31040316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17878.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	153.31	170.49	105.44	225.36	243.98	172.81	202.79	242.75	88.06
Merged-chr5-124425904-3	chr5	124425340	124426340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359978)	promoter-TSS (NM_001359978)	117.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	199.07	150.22	142.44	182.85	125.02	133.43	216.52	181.73	105.55
Merged-chr10-121471746-3	chr10	121471247	121472247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	4503.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	94.96	109.67	63.82	167.33	103.56	102.88	85.55	94.18	51.21
Merged-chr8-109777795-3	chr8	109777304	109778304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-779.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	58.35	61.28	77.7	63.42	65.78	59.48	50.7	72.07	38.72
Merged-chr1-155812902-3	chr1	155812405	155813405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023268)	promoter-TSS (NM_023268)	-6.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	112.69	98.61	77.7	127.52	150.22	149.5	32.74	22.55	36.85
Merged-chr12-102456237-1	chr12	102455737	102456737	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12897.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	165.9	178.78	135.97	244.92	177.74	168.8	197.51	283.43	134.9
Merged-chr7-80779501-3	chr7	80779005	80780005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	23826.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	137.29	125.33	118.39	157.88	129.22	122.18	160.54	200.3	108.04
Merged-chr10-98775024-3	chr10	98774538	98775538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139604.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	197.36	141.46	75.85	162.61	83.04	90.83	110.9	99.93	122.41
Merged-chr1-189875833-1	chr1	189875333	189876333	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	46458.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	4.58	1.84	1.85	22.27	7.0	12.06	3.17	3.54	0.0
Merged-chr3-144697350-3	chr3	144696849	144697849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 8 of 10)	(T)n|Simple_repeat|Simple_repeat	22986.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	274.01	284.3	125.79	302.95	243.05	166.38	262.99	327.2	118.04
Merged-chr9-50856560-1	chr9	50856060	50857060	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	-364.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	15.45	14.28	22.2	14.84	17.26	21.7	67.6	41.12	29.35
Merged-chr8-71570513-3	chr8	71570011	71571011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357182)	promoter-TSS (NM_001357182)	-83.0	NM_001357182	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	86.95	56.68	48.1	72.87	57.85	77.97	74.99	63.67	33.72
Merged-chr12-110776193-3	chr12	110775713	110776713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	38281.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	161.32	135.47	138.74	153.84	125.49	128.61	177.44	164.49	81.81
Merged-chr17-83395585-3	chr17	83395094	83396094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	MTEa|LTR|ERVL-MaLR	44663.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	53.77	51.61	25.9	36.43	28.92	16.08	36.97	39.35	24.36
Merged-chr2-128297050-3	chr2	128296545	128297545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132306.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	14.87	7.37	11.1	14.17	7.93	11.25	15.84	12.38	9.99
Merged-chr14-120910519-2	chr14	120910027	120911027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-667.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	131.0	78.33	37.92	114.03	69.04	44.21	115.12	69.86	41.84
Merged-chr6-3447638-3	chr6	3447159	3448159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	46839.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.57	7.83	0.0	5.4	3.73	3.22	8.45	2.65	4.37
Merged-chr8-72723305-3	chr8	72722847	72723847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009188)	promoter-TSS (NM_009188)	77.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	87.52	71.88	59.2	65.45	96.1	58.68	87.66	77.38	40.59
Merged-chr2-14231626-3	chr2	14231123	14232123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	2209.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	166.47	175.1	79.55	183.52	175.41	110.12	176.38	221.97	90.56
Merged-chr5-135394576-3	chr5	135394074	135395074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148932)	promoter-TSS (NM_148932)	-28.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	229.97	96.3	130.42	170.7	83.97	129.41	164.76	65.44	59.33
Merged-chr9-21146929-3	chr9	21146433	21147433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016742, intron 1 of 7)	intron (NM_016742, intron 1 of 7)	2973.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	13.16	17.51	32.37	16.87	14.0	21.7	17.96	7.07	21.23
Merged-chr11-69408755-3	chr11	69408257	69409257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001017426, exon 2 of 23)	5' UTR (NM_001017426, exon 2 of 23)	4918.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	449.63	329.92	283.04	379.19	261.71	203.36	398.18	473.12	158.63
Merged-chr9-96478676-3	chr9	96478172	96479172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011279)	promoter-TSS (NM_011279)	3.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	113.84	98.61	98.05	163.96	118.03	134.23	141.53	123.36	76.19
Merged-chr2-11535587-3	chr2	11535071	11536071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	18358.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	133.29	107.36	70.3	190.27	152.08	163.97	194.34	200.3	79.32
Merged-chr8-70375374-3	chr8	70374879	70375879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016685, intron 4 of 18)	CpG-14087	1831.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	22.31	11.52	28.67	49.93	29.86	48.23	33.8	22.99	11.87
Merged-chr1-33907615-3	chr1	33907124	33908124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-3.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	212.8	197.22	180.37	91.09	62.51	68.32	88.72	74.73	49.34
Merged-chr1-140257911-3	chr1	140257407	140258407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	11650.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	12.01	10.14	5.55	10.8	15.86	11.25	6.34	7.07	11.24
Merged-chr6-54956571-3	chr6	54956086	54957086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15075.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	82.38	105.52	106.37	82.99	82.57	81.99	127.8	133.98	91.81
Merged-chr9-21265227-3	chr9	21264738	21265738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153583)	promoter-TSS (NM_153583)	-47.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	43.48	48.84	44.4	43.86	39.19	62.7	42.25	26.97	27.48
Merged-chr10-80929895-3	chr10	80929403	80930403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-188.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	188.21	135.93	143.37	164.63	127.36	162.37	177.44	200.3	89.93
Merged-chr6-120472097-3	chr6	120471601	120472601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008359, exon 2 of 13)	exon (NM_008359, exon 2 of 13)	8904.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	86.95	124.41	113.77	103.91	117.56	139.86	119.35	122.92	97.43
Merged-chr7-118116209-3	chr7	118115717	118116717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170669)	promoter-TSS (NM_170669)	-70.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	80.09	97.69	64.75	76.92	86.77	102.08	133.08	142.82	81.81
Merged-chr2-52857736-3	chr2	52857223	52858223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172409)	promoter-TSS (NM_172409)	-145.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	100.11	66.81	127.64	132.24	98.43	141.47	104.56	84.9	68.07
Merged-chr11-53762992-3	chr11	53762504	53763504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106131)	TTS (NR_106131)	650.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	217.95	188.46	151.69	229.4	153.48	223.45	209.12	254.69	106.79
Merged-chr6-22474813-3	chr6	22474298	22475298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118717.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	37.18	33.18	46.25	29.01	27.52	27.33	27.46	23.88	33.1
Merged-chr6-54593260-3	chr6	54592767	54593767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153573)	promoter-TSS (NM_153573)	-139.0	NM_153573	231997.0	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	44.05	53.45	49.95	75.57	65.78	68.32	49.64	54.39	25.61
Merged-chr2-84531468-3	chr2	84530979	84531979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24606.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	85.24	58.06	84.17	74.22	56.45	45.82	60.2	88.88	43.09
Merged-chr9-119982531-3	chr9	119982027	119983027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	496.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	183.06	155.28	135.04	159.23	121.29	81.99	166.88	196.76	101.8
Merged-chr4-119320570-3	chr4	119320081	119321081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028677)	promoter-TSS (NM_028677)	-58.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	36.61	46.54	39.77	37.11	33.59	60.28	68.65	41.12	39.35
Merged-chr15-51734391-3	chr15	51733861	51734861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131100.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	50.34	64.97	65.67	31.71	29.86	24.92	26.4	37.58	18.11
Merged-chr3-28099358-3	chr3	28098843	28099843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 19 of 25)	intron (NM_008875, intron 19 of 25)	115172.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	12.59	9.68	12.95	14.84	12.6	8.84	22.18	12.82	8.12
Merged-chr4-95209561-3	chr4	95209045	95210045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157323.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.58	8.29	5.55	26.99	9.33	13.66	8.45	3.98	8.12
Merged-chr9-100504536-3	chr9	100504041	100505041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	L3|LINE|CR1	2315.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	188.21	275.09	99.89	173.4	203.86	118.96	157.37	222.41	58.71
Merged-chr12-79172661-3	chr12	79172185	79173185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016800)	promoter-TSS (NM_016800)	-227.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	351.24	329.46	270.09	408.2	341.95	331.16	341.15	342.68	159.88
Merged-chr12-54696930-3	chr12	54696406	54697406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U1|snRNA|snRNA	-1012.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	275.73	311.03	179.44	208.49	261.24	181.66	277.78	396.62	138.65
Merged-chr19-3378792-3	chr19	3378286	3379286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-10071.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	93.24	128.56	85.1	80.97	62.98	129.41	122.52	126.9	63.08
Merged-chr6-112696285-3	chr6	112695771	112696771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167730, intron 1 of 13)	intron (NM_001167730, intron 1 of 13)	399.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	297.47	235.46	52.72	284.06	265.91	101.28	270.38	209.59	73.07
Merged-chr10-128536482-3	chr10	128535969	128536969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10610.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	50.91	48.38	40.7	73.54	45.72	70.73	60.2	65.44	34.35
Merged-chr16-44768131-3	chr16	44767628	44768628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	2392.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	73.22	69.58	45.32	53.98	55.98	40.19	55.98	62.79	32.48
Merged-chr16-21382361-3	chr16	21381859	21382859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40759.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	76.08	52.53	28.67	78.27	57.38	53.85	81.33	87.55	50.59
Merged-chr17-29717011-3	chr17	29716493	29717493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163741)	promoter-TSS (NM_001163741)	24.0	NM_026782	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	14.87	13.36	7.4	12.14	14.0	8.84	21.12	6.63	3.75
Merged-chr5-135545466-3	chr5	135544945	135545945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146001)	promoter-TSS (NM_146001)	-323.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	17.16	24.42	27.75	37.78	28.92	32.15	38.02	40.68	21.86
Merged-chr3-89087644-3	chr3	89087198	89088198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028188, intron 9 of 10)	intron (NM_028188, intron 9 of 10)	2333.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	59.49	51.15	12.95	62.07	34.52	47.42	51.75	46.43	20.61
Merged-chr6-54811791-3	chr6	54811292	54812292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	34.9	39.17	33.3	33.74	27.52	58.68	43.3	35.37	55.58
Merged-chr11-87404558-3	chr11	87404057	87405057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031386)	promoter-TSS (NM_031386)	-62.0	NM_053269	114714.0	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	277.45	346.51	185.92	296.2	363.41	226.67	233.42	353.29	139.89
Merged-chr15-80134057-3	chr15	80133568	80134568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025609, intron 1 of 10)	intron (NM_025609, intron 1 of 10)	914.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	127.57	146.53	153.54	140.34	131.56	147.9	167.93	159.18	108.67
Merged-chr11-118476887-3	chr11	118476394	118477394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359368)	promoter-TSS (NM_001359368)	62.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	72.65	77.87	96.2	93.79	95.63	85.2	138.36	142.82	89.31
Merged-chr3-79288276-3	chr3	79287766	79288766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57110.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	122.99	158.51	97.12	90.41	80.24	72.34	71.82	105.68	71.82
Merged-chr1-119492402-3	chr1	119491900	119492900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	RLTR26B_MM|LTR|ERVK	12382.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	24.6	31.79	47.17	25.64	20.06	36.17	20.07	22.55	42.47
Merged-chr9-77750756-3	chr9	77750269	77751269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3766.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	263.14	334.53	236.79	313.07	342.88	313.48	248.2	273.7	185.48
Merged-chr12-25098915-3	chr12	25098422	25099422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2830.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	382.7	377.84	301.53	462.86	376.47	304.64	514.36	495.67	232.32
Merged-chr16-16870775-3	chr16	16870251	16871251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011624)	promoter-TSS (NM_011624)	15.0	NM_011624	21976.0	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	98.97	123.49	87.87	135.62	89.1	117.35	132.02	122.48	91.18
Merged-chr17-63422103-3	chr17	63421602	63422602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	78478.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	20.02	19.81	11.1	19.57	21.46	16.88	25.35	20.78	12.49
Merged-chr11-69662312-1	chr11	69661812	69662812	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	337.0	NR_125917	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	251.13	188.92	176.67	197.02	142.29	162.37	199.62	216.66	106.17
Merged-chr10-76442336-3	chr10	76441838	76442838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008787, intron 1 of 41)	CpG	574.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	179.05	218.41	161.87	134.27	175.87	121.37	152.09	156.53	76.19
Merged-chr15-77842288-3	chr15	77841789	77842789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	-114.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	96.11	108.75	131.34	66.8	90.04	105.3	54.92	83.57	84.31
Merged-chr3-37312479-3	chr3	37311936	37312936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001255992)	promoter-TSS (NM_001255992)	10.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	98.97	79.25	67.52	114.7	91.44	85.2	105.62	66.33	55.58
Merged-chr10-37204569-3	chr10	37204083	37205083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65657.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	120.13	99.07	46.25	121.45	104.03	70.73	52.81	92.86	40.59
Merged-chr3-144205440-3	chr3	144204906	144205906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010723)	promoter-TSS (NM_010723)	-151.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	225.96	150.68	173.89	238.18	76.51	131.82	159.48	93.74	120.53
Merged-chr17-32284053-3	chr17	32283553	32284553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	70.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	538.87	373.24	355.18	421.7	263.58	285.34	412.97	253.8	247.31
Merged-chr11-20204517-3	chr11	20204015	20205015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	B1F|SINE|Alu	3103.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	118.99	95.84	55.5	122.8	84.44	65.91	108.79	112.31	61.2
Merged-chr16-35939875-3	chr16	35939373	35940373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013371)	promoter-TSS (NM_001013371)	-846.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	92.1	115.2	64.75	94.46	88.17	60.28	136.25	162.28	57.46
Merged-chr11-65788352-3	chr11	65787861	65788861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009157)	promoter-TSS (NM_009157)	-2.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	181.91	141.92	133.19	178.13	129.69	127.8	159.48	72.52	101.8
Merged-chr4-48279707-3	chr4	48279241	48280241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	-19.0	NM_010569	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	84.66	127.64	89.72	95.81	110.1	93.24	117.24	115.85	53.08
Merged-chr10-81088595-3	chr10	81088080	81089080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145365, exon 8 of 12)	exon (NM_145365, exon 8 of 12)	10292.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	38.9	43.77	64.75	33.74	39.65	48.23	36.97	49.52	38.72
Merged-chr4-135820403-3	chr4	135819910	135820910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35661.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	95.53	96.3	38.85	90.41	83.04	69.13	74.99	92.86	56.21
Merged-chr17-25844562-3	chr17	25844074	25845074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163766)	TTS (NM_001163766)	277.0	NM_145999	214952.0	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	40.62	27.19	21.27	37.11	25.66	40.99	29.57	35.82	39.97
Merged-chr17-71286122-3	chr17	71285624	71286624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24887.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	148.73	126.72	86.95	168.68	124.09	133.43	91.89	78.71	35.6
Merged-chr1-40230519-3	chr1	40230039	40231039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	5459.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	3.43	0.92	3.7	11.47	3.27	8.04	5.28	5.31	2.5
Merged-chr19-41774617-1	chr19	41774117	41775117	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27467.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	87.52	105.06	94.35	91.09	85.37	69.93	236.59	243.63	99.92
Merged-chr5-21188607-3	chr5	21188097	21189097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2330.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	233.4	207.81	147.99	216.58	170.28	152.72	164.76	192.34	91.81
Merged-chr16-23305912-3	chr16	23305407	23306407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	15437.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	28.6	42.39	29.6	82.99	45.25	73.95	55.98	38.47	36.22
Merged-chr11-50292485-3	chr11	50291980	50292980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175334)	promoter-TSS (NM_175334)	-144.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	382.7	368.63	317.26	369.07	361.08	242.74	309.46	276.8	212.34
Merged-chr8-35705037-1	chr8	35704537	35705537	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116017.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.86	3.69	1.85	4.05	3.27	6.43	2.11	2.65	0.0
Merged-chr12-110845312-3	chr12	110844851	110845851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Ile-ATT|tRNA|tRNA	4322.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	128.14	148.37	98.97	135.62	137.62	131.82	185.89	195.88	121.78
Merged-chr4-134128781-3	chr4	134128283	134129283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-30.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	62.35	62.21	75.85	70.85	52.72	91.63	118.29	103.02	60.58
Merged-chr16-10433531-3	chr16	10433037	10434037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	65.79	47.92	41.62	51.28	31.26	61.89	51.75	44.66	36.22
Merged-chr15-96286780-3	chr15	96286277	96287277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-745.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	203.08	190.76	183.14	155.86	134.35	186.48	219.69	181.73	153.01
Merged-chr11-53430411-3	chr11	53429911	53430911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025352, intron 1 of 1)	intron (NM_025352, intron 1 of 1)	420.0	NM_025352	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	460.5	374.62	201.64	413.6	371.34	271.68	376.0	363.46	166.12
Merged-chr13-80949278-3	chr13	80948771	80949771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_103550)	TTS (NR_103550)	8868.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	91.53	94.0	75.85	114.03	104.96	102.08	102.45	104.79	61.2
Merged-chr6-54284507-3	chr6	54284019	54285019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	11697.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	80.66	117.04	55.5	103.23	82.11	71.54	80.27	87.11	32.48
Merged-chr15-79687967-3	chr15	79687473	79688473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028792)	promoter-TSS (NM_028792)	-101.0	NM_028792	74158.0	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	615.53	497.65	361.66	582.96	449.25	291.78	465.78	453.22	216.71
Merged-chr4-116557082-3	chr4	116556580	116557580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029868)	promoter-TSS (NM_029868)	-647.0	NM_029868	77110.0	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	299.76	330.84	273.79	311.72	271.04	302.22	347.48	419.17	251.68
Merged-chr11-77386550-3	chr11	77386027	77387027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	38247.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	38.33	44.24	41.62	45.21	34.06	32.96	54.92	67.65	53.71
Merged-chr4-115857486-3	chr4	115856968	115857968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355174, intron 3 of 11)	intron (NM_001355174, intron 3 of 11)	18270.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	90.96	52.53	50.87	85.01	41.52	59.48	72.88	41.12	44.34
Merged-chrUn_JH584304-11029-1	chrUn_JH584304	10529	11529	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48660.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	130.97	115.85	0.0
Merged-chr2-13413699-3	chr2	13413191	13414191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	78185.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	8.58	8.75	5.55	20.92	14.0	12.86	14.79	12.38	3.75
Merged-chr4-132780472-3	chr4	132779972	132780972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12112.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	33.75	39.17	39.77	41.16	22.39	33.76	34.85	24.32	31.23
Merged-chr13-54565424-3	chr13	54564938	54565938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252648)	promoter-TSS (NM_001252648)	-56.0	NM_133797	97820.0	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	78.37	76.03	54.57	66.12	46.65	84.4	57.03	50.85	31.85
Merged-chr11-49846749-3	chr11	49846307	49847307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	56.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	211.66	176.48	209.04	121.45	139.95	124.59	203.84	178.19	146.76
Merged-chr1-131138300-3	chr1	131137727	131138727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	7.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	59.49	53.91	28.67	45.21	41.52	42.6	46.47	46.87	26.85
Merged-chr1-91250218-3	chr1	91249713	91250713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355761)	promoter-TSS (NM_001355761)	-91.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	354.1	251.59	283.96	294.85	203.4	250.78	250.32	183.94	124.91
Merged-chr2-150840303-3	chr2	150839818	150840818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	2252.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	262.57	268.64	162.79	271.24	221.59	184.87	232.36	306.42	135.52
Merged-chr7-28732906-3	chr7	28732410	28733410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310687, intron 3 of 6)	intron (NM_001310687, intron 3 of 6)	7911.0	NM_001360254	24030.0	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	10.3	11.52	12.95	22.27	12.13	25.72	13.73	4.86	5.0
Merged-chr17-81706318-3	chr17	81705804	81706804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	32083.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	97.82	122.11	47.17	127.52	127.36	92.44	128.85	164.93	69.95
Merged-chr17-34101899-3	chr17	34101391	34102391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6582.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	114.41	94.0	64.75	24.96	19.59	19.29	154.2	174.66	79.94
Merged-chr4-12088002-3	chr4	12087512	12088512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177861)	promoter-TSS (NM_177861)	-5.0	NR_110955	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	95.53	128.1	73.07	67.47	63.45	46.62	89.78	113.19	89.31
Merged-chr11-116852495-3	chr11	116851987	116852987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011358, intron 1 of 2)	CpG	607.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	245.98	199.52	171.12	261.12	179.14	224.26	197.51	171.56	171.75
Merged-chr13-28420039-3	chr13	28419532	28420532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277548.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	12.01	7.83	0.92	17.54	17.26	11.25	4.22	7.96	3.75
Merged-chr8-70792496-3	chr8	70791996	70792996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-63.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	101.83	87.55	84.17	93.79	75.57	82.79	86.61	84.9	48.71
Merged-chr16-97962291-3	chr16	97961774	97962774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175428, intron 1 of 2)	CpG	348.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	442.77	368.17	256.21	400.11	325.62	229.08	348.54	294.04	141.77
Merged-chr14-54409418-3	chr14	54408916	54409916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	56.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	230.54	218.41	238.64	255.72	211.79	262.04	211.24	249.38	126.78
Merged-chr12-8922971-3	chr12	8922474	8923474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	1667.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	343.23	398.12	269.16	258.42	273.84	256.41	377.06	444.82	166.12
Merged-chr4-57959398-3	chr4	57958920	57959920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3009.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	72.65	63.59	49.02	47.9	52.25	69.13	72.88	91.97	40.59
Merged-chr7-24547047-3	chr7	24546555	24547555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009532, exon 2 of 18)	5' UTR (NM_009532, exon 2 of 18)	356.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	89.81	87.09	86.02	89.06	99.83	63.5	94.0	66.33	36.22
Merged-chr12-16584243-3	chr12	16583752	16584752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355598, intron 1 of 20)	intron (NM_001355598, intron 1 of 20)	5518.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	28.6	36.4	18.5	26.31	18.19	20.9	15.84	12.38	9.99
Merged-chr7-130893252-3	chr7	130892759	130893759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357696, intron 5 of 12)	intron (NM_001357696, intron 5 of 12)	-15009.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	119.56	114.27	45.32	133.59	105.9	98.06	84.49	82.69	73.07
Merged-chr8-46933863-3	chr8	46933357	46934357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53030.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	292.32	235.92	128.57	304.3	186.6	204.16	245.04	241.42	137.4
Merged-chr9-119322367-3	chr9	119321875	119322875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	52.0	NR_045693	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	431.33	360.33	283.04	352.2	308.83	249.17	351.71	330.74	146.76
Merged-chr17-29490530-3	chr17	29490033	29491033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-512.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	270.58	162.66	172.04	250.32	142.75	122.18	181.66	195.44	99.3
Merged-chr5-108694173-3	chr5	108693683	108694683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164259)	promoter-TSS (NM_001164259)	-46.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	11.44	3.23	3.7	18.89	3.27	4.82	9.51	3.98	3.75
Merged-chr7-44970315-3	chr7	44969803	44970803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357670, intron 6 of 18)	intron (NM_001357670, intron 6 of 18)	4548.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	13.16	14.75	9.25	31.04	16.33	17.68	9.51	11.05	13.74
Merged-chr11-90002881-3	chr11	90002376	90003376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008796)	promoter-TSS (NM_008796)	18.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	8.01	8.29	14.8	9.45	8.4	8.84	10.56	7.52	6.25
Merged-chr3-109448459-3	chr3	109447960	109448960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	L3|LINE|CR1	107777.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	41.19	41.01	21.27	56.68	48.52	40.19	27.46	34.05	16.86
Merged-chr10-30778487-3	chr10	30777989	30778989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	24837.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	85.81	92.16	29.6	103.23	76.04	47.42	65.48	73.84	27.48
Merged-chr4-129820704-3	chr4	129820211	129821211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164745)	promoter-TSS (NM_001164745)	3.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	383.28	275.09	332.98	319.82	228.59	195.32	341.15	294.48	216.09
Merged-chr9-61032274-2	chr9	61031787	61032787	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15218.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	4.0	0.46	0.0	16.19	11.2	10.45	36.97	20.34	31.23
Merged-chr9-124037930-3	chr9	124037457	124038457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	15986.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	105.26	89.39	62.9	109.98	83.51	90.02	105.62	99.93	89.93
Merged-chr2-10048634-3	chr2	10048119	10049119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-10.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	61.78	74.19	35.15	55.33	73.24	55.46	104.56	105.24	43.09
Merged-chr1-144004228-3	chr1	144003735	144004735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009061)	promoter-TSS (NM_009061)	-86.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	216.81	209.2	129.49	271.24	221.13	225.06	220.74	273.7	132.4
Merged-chr2-23156032-3	chr2	23155530	23156530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-6.0	NM_025979	67121.0	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	235.69	299.97	142.44	194.99	271.97	221.04	251.37	277.24	139.89
Merged-chr5-106964378-3	chr5	106963898	106964898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009863)	promoter-TSS (NM_009863)	76.0	NM_009863	12545.0	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	22.88	11.06	14.8	16.19	15.86	14.47	17.96	7.07	14.36
Merged-chr7-137421504-1	chr7	137421004	137422004	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10748.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	5.15	3.69	8.32	10.8	3.73	16.08	14.79	14.15	9.99
Merged-chr13-63431718-3	chr13	63431214	63432214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042673)	promoter-TSS (NM_001042673)	31.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	118.99	143.3	108.22	120.77	125.49	151.11	120.41	159.18	104.3
Merged-chr19-46304631-3	chr19	46304116	46305116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-121.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	613.24	506.86	355.18	550.57	480.97	382.6	449.93	544.31	259.18
Merged-chr10-22166213-3	chr10	22165725	22166725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	-7272.0	NM_198193	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	57.21	30.87	28.67	41.16	26.59	31.35	14.79	33.6	7.49
Merged-chr13-88459700-3	chr13	88459195	88460195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-361777.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	38.33	48.84	37.0	43.86	34.99	45.01	65.48	76.94	64.33
Merged-chr19-7018425-4	chr19	7017933	7018933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1036.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	423.32	413.78	285.81	377.17	339.62	332.77	388.68	413.43	269.17
Merged-chr8-128357308-3	chr8	128356803	128357803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1770.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	40.62	39.17	39.77	44.53	32.19	40.19	43.3	53.94	31.23
Merged-chr10-84412776-3	chr10	84412295	84413295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	27676.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	87.52	97.23	82.32	78.27	51.78	72.34	60.2	49.96	48.09
Merged-chr16-17492377-3	chr16	17491880	17492880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291070, intron 1 of 19)	intron (NM_001291070, intron 1 of 19)	459.0	NM_001291070	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	6.29	4.15	0.92	4.72	3.27	9.65	3.17	6.63	7.49
Merged-chr17-33824545-3	chr17	33824020	33825020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_103515)	promoter-TSS (NR_103515)	42.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	364.4	258.5	172.04	418.32	409.13	218.63	324.25	351.08	124.28
Merged-chr8-70610290-3	chr8	70609787	70610787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	390.14	301.35	240.49	429.12	379.74	228.28	305.24	338.7	153.63
Merged-chr5-76522645-3	chr5	76522120	76523120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-6687.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	33.18	49.3	47.17	31.04	30.79	53.85	43.3	44.66	29.98
Merged-chr7-127588213-3	chr7	127587691	127588691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	404.0	NM_001033040	233899.0	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	42.33	36.4	29.6	49.93	32.19	24.11	38.02	26.53	37.47
Merged-chr6-34907371-3	chr6	34906870	34907870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3461.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	132.72	81.1	45.32	194.99	108.7	90.83	85.55	65.88	29.35
Merged-chr16-84835362-3	chr16	84834863	84835863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	239.0	NM_008065	14390.0	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	268.29	221.64	177.59	267.86	192.67	214.61	250.32	199.86	112.42
Merged-chr4-8691124-3	chr4	8690620	8691620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	CpG	714.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	155.6	146.99	209.96	166.66	121.76	131.02	159.48	86.22	106.79
Merged-chr10-57486792-3	chr10	57486267	57487267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	382.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	75.51	58.06	39.77	87.71	52.25	81.99	55.98	46.87	29.98
Merged-chr6-39230882-3	chr6	39230392	39231392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-24119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	141.87	99.07	71.22	150.46	68.58	117.35	88.72	68.54	81.19
Merged-chr12-98249887-3	chr12	98249411	98250411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 5 of 16)	intron (NM_008079, intron 5 of 16)	9548.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	21.74	23.96	7.4	19.57	23.33	12.86	17.96	15.48	9.37
Merged-chr4-32570170-3	chr4	32569645	32570645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	1517.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	323.21	364.02	260.84	384.59	348.02	297.4	324.25	373.19	193.6
Merged-chr1-55506593-3	chr1	55506106	55507106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	MIR|SINE|MIR	100660.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	217.38	229.01	84.17	185.55	192.67	148.7	146.81	212.24	96.18
Merged-chr9-106821840-3	chr9	106821319	106822319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001015507)	promoter-TSS (NM_001015507)	-157.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	302.04	234.54	275.64	269.89	195.47	213.81	266.16	190.13	185.48
Merged-chr15-75842013-3	chr15	75841524	75842524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172121)	promoter-TSS (NM_172121)	-116.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	50.34	60.82	40.7	68.15	57.85	57.87	49.64	66.33	53.71
Merged-chr4-156197502-3	chr4	156197011	156198011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-23.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	296.32	230.39	147.07	251.67	178.67	172.81	216.52	170.23	118.66
Merged-chr10-121740280-3	chr10	121739754	121740754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359720, intron 1 of 2)	intron (NM_001359720, intron 1 of 2)	324.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	175.05	125.79	61.05	186.9	153.01	121.37	163.71	154.32	68.07
Merged-chr12-4769149-3	chr12	4768647	4769647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361147)	promoter-TSS (NM_001361147)	120.0	NM_175431	207921.0	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	35.47	38.71	21.27	30.36	30.32	35.37	34.85	35.82	18.74
Merged-chr12-8637145-3	chr12	8636631	8637631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37003.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	25.17	41.47	16.65	13.49	28.46	24.11	38.02	67.65	23.73
Merged-chr2-76070550-3	chr2	76070047	76071047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88580.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	45.19	21.2	24.05	22.27	20.99	26.53	38.02	16.8	23.73
Merged-chr18-23903057-3	chr18	23902567	23903567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51621.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	32.61	29.95	22.2	59.38	45.72	31.35	44.36	39.8	35.6
Merged-chr7-99141285-3	chr7	99140784	99141784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178635)	promoter-TSS (NM_178635)	-140.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	232.83	167.26	163.72	218.61	162.81	148.7	200.68	196.32	112.42
Merged-chr14-65345669-3	chr14	65345182	65346182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12994.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	64.64	114.74	55.5	58.7	57.38	81.99	70.76	92.86	59.33
Merged-chr6-122653916-3	chr6	122653424	122654424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	27500.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	208.8	205.51	160.02	227.38	132.95	171.21	234.47	248.06	149.26
Merged-chr19-7483290-3	chr19	7482790	7483790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	1.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	256.85	218.87	220.14	177.45	170.28	183.26	213.35	214.45	154.26
Merged-chr11-120492749-3	chr11	120492238	120493238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013770, intron 1 of 10)	intron (NM_013770, intron 1 of 10)	901.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	109.26	112.43	85.1	103.23	98.43	98.06	103.51	114.08	74.32
Merged-chr1-171234726-3	chr1	171234229	171235229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010185)	promoter-TSS (NM_010185)	-380.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	106.97	106.44	122.09	122.8	106.36	129.41	168.99	170.23	114.29
Merged-chr13-51946373-3	chr13	51945874	51946874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99699.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	25.74	13.36	11.1	31.04	12.6	15.27	36.97	19.9	23.73
Merged-chr11-101009431-3	chr11	101008923	101009923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-29.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	533.15	434.06	264.54	413.6	418.92	255.6	372.83	512.91	176.12
Merged-chr4-150909913-3	chr4	150909394	150910394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020569)	promoter-TSS (NM_020569)	27.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	128.71	102.29	111.92	109.98	73.24	119.76	123.57	110.54	77.44
Merged-chr5-130144762-3	chr5	130144211	130145211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-177.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	81.8	86.17	65.67	95.14	85.84	86.81	113.01	108.77	67.45
Merged-chr10-80039815-3	chr10	80039318	80040318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025554)	promoter-TSS (NM_025554)	-159.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	33.75	34.56	26.82	44.53	31.72	38.58	34.85	50.85	35.6
Merged-chr7-19308737-3	chr7	19308216	19309216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 1 of 4)	CpG	1329.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	272.3	213.8	123.94	209.16	181.94	155.93	160.54	207.38	131.78
Merged-chr3-116122920-3	chr3	116122420	116123420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	6768.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	42.33	39.63	16.65	53.3	56.45	54.66	52.81	51.73	34.35
Merged-chr8-85515602-3	chr8	85515096	85516096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	22979.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	28.6	30.41	30.52	55.33	41.05	47.42	68.65	61.46	29.35
Merged-chr12-76404198-3	chr12	76403709	76404709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008301)	promoter-TSS (NM_008301)	33.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	116.13	98.15	94.35	97.16	81.64	85.2	125.69	80.92	88.06
Merged-chr10-99443646-3	chr10	99443145	99444145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165526.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	13.16	17.97	9.25	17.54	13.06	11.25	8.45	10.17	3.75
Merged-chr3-97901181-3	chr3	97900692	97901692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011342)	promoter-TSS (NM_011342)	-35.0	NM_011342	20333.0	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	99.54	124.41	48.1	103.23	92.37	64.3	113.01	101.26	57.46
Merged-chr10-94913563-3	chr10	94913085	94914085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	30993.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	30.32	27.19	12.95	27.66	35.45	20.9	20.07	16.8	16.86
Merged-chr18-84785371-3	chr18	84784868	84785868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	41301.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	36.04	45.16	11.1	36.43	21.46	25.72	24.29	19.46	20.61
Merged-chr15-31602199-3	chr15	31601704	31602704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	88.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	128.14	136.85	77.7	164.63	137.15	141.47	198.56	141.05	81.19
Merged-chr3-89394210-3	chr3	89393722	89394722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-68.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	213.38	234.54	187.77	148.44	131.09	161.56	202.79	274.14	159.88
Merged-chr10-67185702-3	chr10	67185194	67186194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242396)	promoter-TSS (NM_001242396)	-56.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	203.65	280.16	135.04	209.16	208.53	154.33	208.07	236.56	117.41
Merged-chr7-132656289-3	chr7	132655799	132656799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	45656.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	36.61	28.57	22.2	42.51	27.52	55.46	26.4	27.41	18.11
Merged-chr2-5064060-3	chr2	5063574	5064574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181848)	promoter-TSS (NM_181848)	43.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	197.93	175.56	78.62	186.9	223.46	92.44	204.9	204.72	63.08
Merged-chr11-116110302-3	chr11	116109792	116110792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-57.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	516.56	424.84	331.13	439.24	338.22	328.75	269.33	320.57	204.22
Merged-chr8-46395554-3	chr8	46395065	46396065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-75472.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	29.17	14.75	38.85	17.54	16.79	15.27	28.52	11.5	18.11
Merged-chr3-40540831-3	chr3	40540350	40541350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175515)	promoter-TSS (NM_175515)	83.0	NM_175515	380614.0	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	14.87	9.22	6.47	11.47	10.26	15.27	10.56	8.4	3.75
Merged-chr7-141467394-3	chr7	141466909	141467909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009842)	promoter-TSS (NM_009842)	47.0	NM_001111049	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	116.7	87.09	96.2	105.26	95.63	87.61	119.35	140.61	74.32
Merged-chr10-22731421-3	chr10	22730890	22731890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	57.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	181.34	211.5	231.24	203.76	224.39	232.29	220.74	178.64	152.38
Merged-chr1-40240656-3	chr1	40240160	40241160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	15580.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	3.43	2.3	5.55	8.77	4.2	8.04	4.22	4.86	5.0
Merged-chr3-79154190-1	chr3	79153690	79154690	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8315.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	72.65	67.74	61.05	93.11	66.71	80.38	95.06	98.16	56.21
Merged-chr15-51991824-3	chr15	51991315	51992315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009009)	promoter-TSS (NM_009009)	-55.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	245.98	168.19	105.44	190.95	143.68	126.19	195.39	178.19	71.2
Merged-chrX-13281005-3	chrX	13280498	13281498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010028)	promoter-TSS (NM_010028)	-24.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	319.78	349.74	298.76	296.2	351.28	272.48	266.16	312.17	191.11
Merged-chr14-121366393-3	chr14	121365883	121366883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	12847.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	6.86	9.22	3.7	11.47	4.2	2.41	7.39	2.65	8.74
Merged-chr2-68879276-3	chr2	68878771	68879771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	17830.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	12.01	16.13	18.5	13.49	15.39	28.13	31.69	15.92	21.86
Merged-chr17-37203755-3	chr17	37203256	37204256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5790.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	20.59	12.44	15.72	6.07	7.93	7.23	5.28	8.4	7.49
Merged-chr4-138214046-2	chr4	138213536	138214536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2576.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	17.16	12.9	11.1	14.84	7.46	14.47	10.56	4.86	9.99
Merged-chr2-50690294-3	chr2	50689783	50690783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219401.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	15.45	7.83	15.72	14.17	3.27	11.25	7.39	4.42	12.49
Merged-chr16-30972130-3	chr16	30971647	30972647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	109285.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	21.74	21.66	23.12	34.41	18.19	23.31	44.36	35.82	49.96
Merged-chr2-36244886-3	chr2	36244371	36245371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	14445.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	56.63	67.74	57.35	77.59	50.85	69.13	76.05	54.39	48.09
Merged-chr7-101451198-3	chr7	101450632	101451632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	116.0	NR_152193	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	42.33	25.8	28.67	36.43	27.52	25.72	10.56	9.29	4.37
Merged-chr7-90040671-3	chr7	90040172	90041172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	11513.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	284.31	297.67	187.77	309.02	257.05	272.48	255.6	342.24	186.73
Merged-chr9-25519390-3	chr9	25518892	25519892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	37795.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	52.63	36.4	8.32	68.15	29.39	32.96	88.72	77.38	23.11
Merged-chr2-29802645-3	chr2	29802155	29803155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011989)	promoter-TSS (NM_011989)	-25.0	NM_011989	26569.0	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	15.45	7.83	12.95	17.54	8.86	13.66	11.62	6.19	11.87
Merged-chr2-150749575-1	chr2	150749075	150750075	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	494.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	262.57	314.25	248.81	218.61	230.46	203.36	265.1	273.7	159.25
Merged-chr16-13256491-5	chr16	13255999	13256999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122667)	promoter-TSS (NM_001122667)	18.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	84.09	80.64	57.35	93.11	90.97	81.99	91.89	62.35	50.59
Merged-chr11-73138351-3	chr11	73137846	73138846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010353)	promoter-TSS (NM_010353)	-52.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	44.62	48.84	12.95	43.18	40.12	39.39	45.42	41.12	38.72
Merged-chr5-77095218-3	chr5	77094709	77095709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159901)	promoter-TSS (NM_001159901)	58.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	2.29	4.61	9.25	3.37	1.4	0.8	6.34	4.42	2.5
Merged-chr2-166623340-3	chr2	166622829	166623829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	58807.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	109.83	63.13	67.52	87.71	50.38	54.66	82.38	56.16	35.6
Merged-chr19-8953752-3	chr19	8953249	8954249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-83.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	175.05	150.68	133.19	107.28	118.03	108.51	86.61	114.96	80.56
Merged-chr16-10976322-3	chr16	10975824	10976824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	16797.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	215.09	140.08	111.92	228.73	117.56	104.49	188.0	161.39	71.2
Merged-chr12-98375553-5	chr12	98375092	98376092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	106957.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	85.81	96.76	53.65	51.95	67.64	55.46	65.48	60.13	49.34
Merged-chr8-106415328-3	chr8	106414820	106415820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011764)	promoter-TSS (NM_011764)	-19.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	92.1	83.86	70.3	107.95	106.83	92.44	127.8	130.44	74.32
Merged-chr6-29348049-3	chr6	29347538	29348538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_184053)	promoter-TSS (NM_184053)	-68.0	NM_001285412	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	210.52	215.19	128.57	208.49	224.86	172.81	197.51	191.02	99.92
Merged-chr7-104446516-3	chr7	104446022	104447022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357467)	promoter-TSS (NM_001357467)	-397.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	138.44	151.6	125.79	144.39	141.35	118.96	161.6	149.01	105.55
Merged-chr11-59839372-3	chr11	59838878	59839878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011991, intron 1 of 11)	CpG	389.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	146.45	201.36	142.44	155.19	145.55	153.52	194.34	195.88	130.53
Merged-chr5-129908586-3	chr5	129908080	129909080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026916)	promoter-TSS (NM_026916)	40.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	101.25	94.0	70.3	126.85	94.23	110.92	84.49	64.56	58.71
Merged-chr16-3732802-3	chr16	3732307	3733307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11292.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	10.87	22.12	22.2	39.13	38.25	30.54	44.36	38.91	29.35
Merged-chr10-20772246-3	chr10	20771709	20772709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47131.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	174.48	248.36	111.92	182.17	165.14	122.98	239.75	346.22	126.15
Merged-chr10-59879581-3	chr10	59879095	59880095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	4.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	231.68	211.96	173.89	178.13	145.55	203.36	216.52	224.62	143.02
Merged-chr9-55149864-3	chr9	55149331	55150331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346658)	promoter-TSS (NM_001346658)	-252.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	133.29	107.36	74.92	165.98	109.16	106.9	136.25	58.37	58.71
Merged-chr7-121707467-3	chr7	121706970	121707970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033173)	promoter-TSS (NM_001033173)	-217.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	30.32	22.12	25.9	44.53	19.13	43.4	46.47	12.38	13.74
Merged-chr14-63448031-3	chr14	63447505	63448505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	11611.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	63.5	64.05	42.55	56.68	46.18	36.97	65.48	32.72	23.11
Merged-chr17-24455377-3	chr17	24454895	24455895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007893)	promoter-TSS (NM_007893)	-3.0	NR_125990	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	273.44	308.73	204.41	230.75	280.84	192.11	207.01	222.85	127.4
Merged-chr11-54729533-3	chr11	54729044	54730044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	58159.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	96.11	98.61	52.72	93.79	71.84	99.67	60.2	66.33	47.46
Merged-chr1-151625452-3	chr1	151624957	151625957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54084.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	48.62	58.06	36.07	70.17	53.18	64.3	62.31	69.86	32.48
Merged-chr7-41633894-1	chr7	41633394	41634394	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360684)	promoter-TSS (NM_001360684)	363.0	NM_001360674	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	92.67	91.24	99.89	82.32	84.9	87.61	118.29	102.14	59.95
Merged-chr7-130547380-3	chr7	130546890	130547890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-9.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	113.84	103.68	96.2	138.99	86.3	57.07	82.38	80.92	63.08
Merged-chr5-23433421-3	chr5	23432929	23433929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	924.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	775.13	802.23	568.85	725.32	843.91	464.59	592.52	783.96	357.23
Merged-chr12-35535079-3	chr12	35534570	35535570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013464)	promoter-TSS (NM_013464)	-81.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	85.81	60.82	25.9	87.04	62.51	65.11	55.98	38.03	28.73
Merged-chr3-19163180-3	chr3	19162674	19163674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028840)	promoter-TSS (NM_028840)	-79.0	NM_001357689	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	69.79	67.74	72.15	77.59	48.52	68.32	79.21	72.52	50.59
Merged-chr13-9760216-3	chr13	9759725	9760725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	3585.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	48.62	31.79	14.8	41.16	25.19	16.88	36.97	47.75	19.98
Merged-chr12-86884861-3	chr12	86884332	86885332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145836)	promoter-TSS (NM_145836)	-18.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	228.25	176.48	136.89	196.34	150.68	145.49	223.91	200.74	123.03
Merged-chr9-24298421-3	chr9	24297925	24298925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175678, intron 6 of 9)	ORR1E|LTR|ERVL-MaLR	200407.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	28.03	16.59	21.27	31.71	25.19	16.88	26.4	26.97	34.35
Merged-chr3-148221048-3	chr3	148220531	148221531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	733604.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	28.03	11.06	4.62	31.04	11.66	7.23	9.51	2.65	0.0
Merged-chr16-36711977-3	chr16	36711501	36712501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	18023.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	389.57	378.76	137.82	373.12	443.18	221.85	298.9	431.56	148.64
Merged-chr15-82338958-3	chr15	82338503	82339503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008669)	promoter-TSS (NM_008669)	-177.0	NM_008669	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	163.61	163.58	105.44	178.8	180.54	145.49	168.99	195.0	81.19
Merged-chr8-69901690-3	chr8	69901179	69902179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032004)	promoter-TSS (NM_032004)	-505.0	NM_032004	83984.0	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	228.82	277.85	188.69	203.76	210.86	176.03	253.48	307.31	145.51
Merged-chr17-81536329-3	chr17	81535823	81536823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	202064.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	58.92	89.85	49.95	49.25	53.65	43.4	68.65	66.33	38.1
Merged-chr5-123228225-3	chr5	123227724	123228724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026000)	promoter-TSS (NM_026000)	34.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	39.47	32.72	17.57	47.23	41.52	21.7	50.7	42.45	26.85
Merged-chr4-46389293-5	chr4	46388807	46389807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347095, intron 1 of 4)	CpG	116.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	384.42	471.84	298.76	317.12	373.67	241.14	388.68	436.42	156.13
Merged-chr19-32951004-3	chr19	32950498	32951498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	193421.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	38.33	79.72	64.75	51.95	48.98	68.32	64.43	63.67	69.95
Merged-chr9-38728405-3	chr9	38727911	38728911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 9 of 18)	intron (NM_001145957, intron 9 of 18)	10143.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	36.61	31.79	36.07	31.04	36.39	30.54	39.08	46.87	19.36
Merged-chr7-3707210-3	chr7	3706677	3707677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029767)	TTS (NM_029767)	3136.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	71.51	72.8	57.35	74.89	30.32	75.56	32.74	43.33	63.7
Merged-chr5-96911739-3	chr5	96911242	96912242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9530.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	229.39	235.46	138.74	195.67	162.81	198.54	174.27	175.98	129.28
Merged-chr10-63244238-1	chr10	63243738	63244738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359484, intron 1 of 22)	CpG	441.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	216.81	271.4	245.11	203.76	237.45	229.88	214.41	264.86	209.84
Merged-chr5-33658037-3	chr5	33657539	33658539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310541)	promoter-TSS (NM_001310541)	-62.0	NM_001356985	68366.0	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	155.03	148.37	148.92	150.46	118.49	136.64	165.82	180.4	113.04
Merged-chr5-123524235-3	chr5	123523705	123524705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023232)	promoter-TSS (NM_023232)	-41.0	NM_023232	66593.0	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	90.96	75.11	74.92	61.4	68.58	77.16	54.92	50.85	29.35
Merged-chr4-138943909-3	chr4	138943426	138944426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23186.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	51.48	38.71	32.37	35.76	38.72	43.4	38.02	41.12	27.48
Merged-chr9-21166253-3	chr9	21165761	21166761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	CpG	547.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	122.42	117.96	117.47	104.58	92.84	93.24	137.3	145.47	92.43
Merged-chr11-21571987-3	chr11	21571475	21572475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008618)	promoter-TSS (NM_008618)	-41.0	NM_001316675	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	155.03	159.43	105.44	120.77	119.43	69.93	147.87	149.89	88.06
Merged-chr16-49791180-3	chr16	49790680	49791680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64474.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	26.89	23.96	12.95	30.36	17.26	27.33	24.29	17.69	18.74
Merged-chr11-70789473-3	chr11	70788972	70789972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	127.57	110.13	69.37	111.33	84.44	98.87	98.23	111.43	91.18
Merged-chr2-174439648-3	chr2	174439144	174440144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-605.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	399.29	287.07	257.14	305.65	247.25	196.12	277.78	300.23	136.15
Merged-chr1-171326803-1	chr1	171326303	171327303	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2005.0	NM_001357550	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	3.43	4.15	3.7	0.67	2.33	0.0	32.74	45.1	39.35
Merged-chr3-10351418-3	chr3	10350908	10351908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331015)	promoter-TSS (NM_001331015)	-91.0	NM_001331014	66361.0	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	29.75	20.27	9.25	35.76	27.99	24.11	25.35	22.55	26.23
Merged-chr10-70243292-3	chr10	70242785	70243785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1991.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	61.21	58.98	98.05	70.85	58.78	83.59	100.34	92.41	76.19
Merged-chr2-122738453-3	chr2	122737922	122738922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019788)	promoter-TSS (NM_019788)	-83.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	264.29	293.98	177.59	202.42	271.97	249.17	198.56	266.18	144.89
Merged-chr10-125388764-4	chr10	125388268	125389268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59805.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	209.94	242.37	185.92	226.03	179.61	180.85	246.09	253.36	145.51
Merged-chr12-80260503-3	chr12	80259988	80260988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346669)	promoter-TSS (NM_001346669)	-107.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	106.97	74.19	99.89	88.39	81.64	83.59	97.17	71.63	54.33
Merged-chr2-25356392-3	chr2	25355886	25356886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031843)	promoter-TSS (NM_031843)	-54.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	22.88	17.97	11.1	43.86	40.59	42.6	24.29	22.99	13.12
Merged-chr2-136532208-1	chr2	136531708	136532708	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175667)	promoter-TSS (NM_175667)	-113.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.0	5.07	0.92	1.35	5.13	1.61	3.17	0.88	5.62
Merged-chr13-74062240-3	chr13	74061749	74062749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028959)	promoter-TSS (NM_028959)	36.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	79.52	107.36	71.22	82.32	86.77	53.05	110.9	126.46	39.35
Merged-chr14-61696579-3	chr14	61696082	61697082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14209.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	78.94	89.39	85.1	95.81	76.51	103.69	96.11	109.66	63.08
Merged-chr5-108669229-3	chr5	108668745	108669745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_174870)	TTS (NM_174870)	5551.0	NM_001310692	231583.0	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	302.62	412.4	235.86	338.71	455.78	312.67	380.23	409.0	180.49
Merged-chr4-11026443-3	chr4	11025910	11026910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-18791.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	9.72	16.13	10.17	17.54	20.99	20.9	19.01	20.78	7.49
Merged-chr11-30026086-3	chr11	30025573	30026573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146016)	promoter-TSS (NM_146016)	-40.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	99.54	99.53	63.82	85.01	73.71	101.28	115.12	111.87	62.45
Merged-chr9-57521634-2	chr9	57521137	57522137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	CpG	405.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	318.63	315.18	295.99	282.71	303.23	261.23	334.81	401.49	184.86
Merged-chr10-40300873-3	chr10	40300368	40301368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009665, intron 1 of 7)	CpG	1318.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	70.93	66.81	52.72	64.77	55.51	77.97	90.83	91.09	33.1
Merged-chr12-86079537-3	chr12	86079042	86080042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-501.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	68.65	65.43	38.85	85.01	104.5	73.95	73.93	83.57	37.47
Merged-chr12-84451191-3	chr12	84450698	84451698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173756)	promoter-TSS (NM_173756)	-174.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	70.36	64.97	65.67	49.93	50.85	73.14	63.37	63.67	35.6
Merged-chr1-46873970-3	chr1	46873467	46874467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 2 of 10)	intron (NM_001356417, intron 2 of 10)	-20349.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	37.76	53.45	22.2	53.3	24.72	19.29	49.64	29.18	18.74
Merged-chr13-90923031-5	chr13	90922550	90923550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024175)	promoter-TSS (NM_024175)	-72.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	126.42	157.13	116.54	148.44	178.21	171.21	194.34	219.31	102.42
Merged-chr6-85961222-3	chr6	85960703	85961703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028099, intron 1 of 8)	CpG	464.0	NM_028099	72102.0	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	405.59	467.24	308.01	351.53	412.39	302.22	323.19	338.26	227.95
Merged-chr18-37644260-3	chr18	37643776	37644776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175770)	promoter-TSS (NM_175770)	-72.0	NM_175770	24074.0	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	358.68	470.46	193.32	311.72	457.18	200.14	313.69	405.47	151.76
Merged-chr10-33950887-1	chr10	33950387	33951387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359455, intron 1 of 10)	intron (NM_001359455, intron 1 of 10)	372.0	NM_001359456	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	231.68	228.09	213.66	200.39	205.26	191.3	194.34	213.12	177.99
Merged-chr7-97355350-3	chr7	97354857	97355857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16260.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	134.43	146.99	105.44	121.45	107.76	105.3	165.82	142.82	75.57
Merged-chr4-152008883-3	chr4	152008404	152009404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	13.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	294.61	216.11	178.52	205.79	215.99	193.71	194.34	165.81	119.28
Merged-chr2-119547632-3	chr2	119547139	119548139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	-12.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	186.49	186.62	167.42	154.51	163.74	192.91	135.19	147.24	88.68
Merged-chr14-54735720-3	chr14	54735230	54736230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016972, exon 5 of 11)	exon (NM_016972, exon 5 of 11)	-23556.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	84.09	64.51	51.8	84.34	46.18	71.54	59.15	68.54	31.85
Merged-chr10-37339785-3	chr10	37339258	37340258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200832.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	83.52	70.04	32.37	72.19	34.52	49.83	51.75	48.2	38.1
Merged-chr9-44462182-3	chr9	44461729	44462729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7462.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	101.83	92.62	49.02	101.88	76.04	90.02	97.17	113.64	58.08
Merged-chr5-65309080-3	chr5	65308567	65309567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 4 of 24)	MTE2b|LTR|ERVL-MaLR	26572.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	45.19	43.77	38.85	47.23	40.12	25.72	71.82	71.63	43.72
Merged-chr5-20256740-3	chr5	20256225	20257225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349207.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	82.95	80.64	59.2	63.42	50.38	46.62	49.64	54.83	53.08
Merged-chr15-81926260-3	chr15	81925758	81926758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030229)	promoter-TSS (NM_030229)	-45.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	15.45	13.36	10.17	26.99	17.26	6.43	19.01	22.11	6.25
Merged-chr5-73647611-3	chr5	73647135	73648135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011890)	promoter-TSS (NM_011890)	96.0	NM_011890	24051.0	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	14.87	5.99	12.95	10.8	7.46	6.43	25.35	18.57	16.24
Merged-chr6-91679216-3	chr6	91678715	91679715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4852.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	64.07	39.63	42.55	51.28	50.38	66.71	44.36	73.4	44.34
Merged-chr5-102034326-3	chr5	102033841	102034841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	35580.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	129.28	148.37	133.19	178.13	108.7	140.66	176.38	197.21	120.53
Merged-chr6-34863076-3	chr6	34862596	34863596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-50.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	464.51	503.18	269.16	529.65	571.94	319.91	473.17	758.76	254.18
Merged-chr7-101905834-3	chr7	101905333	101906333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-4.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	474.8	386.6	267.31	443.96	445.05	313.48	441.49	460.3	217.96
Merged-chr4-47275153-3	chr4	47274652	47275652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	67140.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	53.2	38.71	25.9	53.98	51.78	45.01	67.6	35.82	27.48
Merged-chr3-103872750-3	chr3	103872242	103873242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104070, intron 3 of 22)	intron (NR_104070, intron 3 of 22)	12465.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	49.77	37.78	31.45	37.78	19.13	27.33	34.85	61.02	30.6
Merged-chr15-89174062-3	chr15	89173548	89174548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159521)	promoter-TSS (NM_001159521)	-97.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	88.67	68.66	94.35	70.17	54.58	107.71	90.83	102.58	41.84
Merged-chr5-124439782-3	chr5	124439275	124440275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030241)	promoter-TSS (NM_030241)	-155.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	89.81	101.37	60.12	80.97	64.84	93.24	124.63	108.77	75.57
Merged-chr5-29434703-3	chr5	29434183	29435183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033457)	promoter-TSS (NM_001033457)	16.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	110.41	123.03	106.37	131.57	141.82	132.63	122.52	93.3	76.19
Merged-chr17-81572987-1	chr17	81572487	81573487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	RMER19B2|LTR|ERVK	165400.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	25.17	16.59	7.4	24.29	19.59	21.7	5.28	7.07	18.74
Merged-chr7-45921477-3	chr7	45920967	45921967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-41.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	44.62	60.82	61.05	55.33	38.25	68.32	58.09	51.29	94.93
Merged-chr17-56008466-3	chr17	56007959	56008959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	-323.0	NM_145934	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	24.03	30.41	28.67	28.34	24.26	45.82	26.4	31.84	16.86
Merged-chrX-134756591-3	chrX	134756106	134757106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358520)	promoter-TSS (NM_001358520)	54.0	NM_001358520	71703.0	Mm.67949	NM_027870	ENSMUSG00000049047	Armcx3	1200004E24Rik|AI450003|ALEX3	armadillo repeat containing, X-linked 3	protein-coding	102.97	147.45	51.8	115.38	153.48	118.16	106.67	108.33	47.46
Merged-chr3-38565064-3	chr3	38564577	38565577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-80261.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	5.72	8.75	1.85	9.45	7.93	3.22	14.79	10.17	7.49
Merged-chr9-124424654-3	chr9	124424162	124425162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027950, exon 2 of 2)	non-coding (NR_027950, exon 2 of 2)	875.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	418.74	316.1	266.39	329.26	321.42	238.73	330.59	428.9	183.61
Merged-chr18-44828518-3	chr18	44828049	44829049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-116.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	486.25	391.21	260.84	327.91	333.55	246.76	337.98	293.16	188.61
Merged-chr11-98816939-3	chr11	98816440	98817440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-6851.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	78.37	63.13	84.17	74.89	43.85	73.95	81.33	108.33	52.46
Merged-chr6-28421726-3	chr6	28421230	28422230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028900)	promoter-TSS (NM_028900)	-6.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	120.13	145.15	111.92	128.2	139.02	148.7	164.76	164.93	75.57
Merged-chr2-154436321-3	chr2	154435836	154436836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-148.0	NM_172860	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	65.79	52.07	74.92	56.68	56.45	63.5	63.37	64.56	33.72
Merged-chr19-23114642-3	chr19	23114146	23115146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26580.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.58	6.45	9.25	6.07	5.6	9.65	11.62	3.54	7.49
Merged-chr9-102521573-3	chr9	102521070	102522070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024291, intron 4 of 10)	ORR1E|LTR|ERVL-MaLR	15432.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	21.74	20.27	29.6	14.17	15.86	40.99	12.67	27.86	17.49
Merged-chr10-81350563-3	chr10	81350055	81351055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010440)	promoter-TSS (NM_010440)	-98.0	NM_001163166	15353.0	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	125.85	87.55	59.2	120.77	78.84	81.99	120.41	96.39	46.22
Merged-chr12-3759670-3	chr12	3759184	3760184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-47296.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	63.5	82.48	57.35	69.5	60.65	88.42	68.65	62.35	46.22
Merged-chr15-25830640-3	chr15	25830150	25831150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12648.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	69.22	35.94	10.17	99.86	48.05	54.66	64.43	42.01	44.97
Merged-chr9-106281167-5	chr9	106280679	106281679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027354, exon 1 of 11)	5' UTR (NM_027354, exon 1 of 11)	118.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	106.4	123.95	77.7	106.61	105.9	108.51	114.07	113.19	50.59
Merged-chr10-75893243-3	chr10	75892741	75893741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358985)	promoter-TSS (NM_001358985)	-157.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	14.3	12.44	0.0	7.42	8.4	6.43	13.73	0.88	3.75
Merged-chr19-6951615-3	chr19	6951115	6952115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007522, exon 4 of 4)	3' UTR (NM_007522, exon 4 of 4)	9053.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	165.32	121.19	179.44	102.56	108.23	139.86	132.02	103.47	131.78
Merged-chr14-57398548-3	chr14	57398047	57399047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-64.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	84.66	105.52	82.32	107.95	117.56	120.57	100.34	111.87	73.07
Merged-chr19-42000078-3	chr19	41999606	42000606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MIR|SINE|MIR	18343.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	108.69	98.61	74.0	143.71	83.97	108.51	114.07	99.93	81.81
Merged-chr10-81633726-3	chr10	81633203	81634203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027480, intron 2 of 19)	intron (NM_027480, intron 2 of 19)	5163.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	12.59	5.53	5.55	12.14	12.13	8.84	15.84	3.1	2.5
Merged-chr12-84004029-3	chr12	84003530	84004530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-5472.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	101.25	104.14	43.47	101.21	116.16	71.54	50.7	55.27	27.48
Merged-chr4-9009897-3	chr4	9009409	9010409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	258585.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	14.3	7.37	18.5	24.29	14.0	22.51	21.12	27.86	14.36
Merged-chr7-16052027-3	chr7	16051539	16052539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19806.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	51.48	65.43	57.35	56.68	36.85	57.87	69.71	78.26	44.97
Merged-chr2-104493594-3	chr2	104493124	104494124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 1 of 15)	CpG	865.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	370.69	398.12	397.73	408.2	327.02	352.06	407.69	305.1	296.03
Merged-chr7-49084901-3	chr7	49084404	49085404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	77254.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	8.58	6.91	0.92	6.07	6.53	6.43	8.45	3.1	6.25
Merged-chr6-142391154-3	chr6	142390648	142391648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025872, intron 1 of 4)	intron (NM_025872, intron 1 of 4)	3905.0	NM_025872	66964.0	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	29.17	13.82	15.72	14.17	6.06	16.08	22.18	15.03	4.37
Merged-chr1-105170325-3	chr1	105169831	105170831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185676.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	65.79	67.27	33.3	43.86	36.85	44.21	68.65	69.86	31.85
Merged-chr13-112800738-3	chr13	112800217	112801217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-60.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	59.49	51.15	65.67	99.86	66.71	76.36	126.74	137.96	101.17
Merged-chr4-141078389-3	chr4	141077893	141078893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025383)	promoter-TSS (NM_025383)	-36.0	NM_025383	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	197.36	150.68	174.82	132.24	160.01	135.04	183.78	151.22	84.94
Merged-chr2-12314197-3	chr2	12313691	12314691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12247.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	22.88	12.9	14.8	14.17	4.67	8.04	14.79	14.15	13.12
Merged-chr17-13010097-3	chr17	13009602	13010602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	2263.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	32.04	28.57	24.97	38.46	20.99	14.47	40.14	42.01	29.98
Merged-chr13-36534373-3	chr13	36533899	36534899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	200078.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	50.91	70.04	58.27	55.33	42.92	44.21	90.83	60.58	37.47
Merged-chr8-82383524-3	chr8	82383053	82384053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	19033.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	92.67	117.04	69.37	103.91	97.5	66.71	134.14	135.75	56.21
Merged-chr6-5092946-3	chr6	5092423	5093423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101023.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	97.25	99.07	74.92	73.54	63.91	90.02	92.94	115.85	84.94
Merged-chr1-16688335-3	chr1	16687829	16688829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016923)	promoter-TSS (NM_016923)	-127.0	NM_016923	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	219.1	306.42	211.81	217.93	247.25	213.0	255.6	325.88	163.0
Merged-chr9-103202101-3	chr9	103201587	103202587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009275)	promoter-TSS (NM_009275)	-22.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	66.93	74.19	40.7	66.12	64.38	42.6	85.55	57.92	43.09
Merged-chr19-60818835-3	chr19	60818328	60819328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7273.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	142.44	167.73	83.25	145.06	133.42	117.35	126.74	161.83	106.79
Merged-chr3-79628893-3	chr3	79628406	79629406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	-139.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	122.42	100.45	91.57	118.08	101.23	80.38	107.73	89.32	49.96
Merged-chr12-36187306-3	chr12	36186796	36187796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 6 of 9)	intron (NM_146033, intron 6 of 9)	30172.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	50.91	53.45	52.72	53.98	64.38	47.42	30.63	27.41	21.23
Merged-chr14-104867747-3	chr14	104867246	104868246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	228599.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	24.6	25.8	12.02	20.92	17.26	16.88	23.24	32.72	13.12
Merged-chr3-145692240-3	chr3	145691709	145692709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42224.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	20.02	16.13	24.05	56.68	60.65	81.18	64.43	75.17	54.96
Merged-chr11-58009861-3	chr11	58009357	58010357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	CpG	793.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	371.83	377.84	378.31	319.14	296.23	314.28	459.44	380.71	294.15
Merged-chr14-45669912-3	chr14	45669405	45670405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-11762.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	24.03	34.56	29.6	33.06	14.0	22.51	50.7	45.54	40.59
Merged-chr17-45583004-3	chr17	45582528	45583528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9365.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	89.81	93.08	56.42	89.74	49.45	88.42	118.29	143.26	54.33
Merged-chr9-41137264-3	chr9	41136755	41137755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20807.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	88.67	76.95	46.25	118.75	65.78	75.56	77.1	47.75	29.98
Merged-chr19-43530358-3	chr19	43529853	43530853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5748.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	52.06	49.76	31.45	66.12	64.38	31.35	64.43	82.24	43.72
Merged-chr8-46935062-3	chr8	46934564	46935564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51823.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	220.24	219.79	145.22	203.09	160.01	184.07	211.24	288.74	146.76
Merged-chr3-95871462-3	chr3	95870920	95871920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040446)	promoter-TSS (NR_040446)	94.0	NM_078479	66292.0	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik|S21mt	mitochondrial ribosomal protein S21	protein-coding	109.26	96.76	62.9	112.0	99.83	98.87	106.67	120.71	54.96
Merged-chr11-54807924-3	chr11	54807403	54808403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12016.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	145.87	93.08	53.65	116.73	78.37	70.73	155.26	110.98	65.58
Merged-chr16-21590979-3	chr16	21590464	21591464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	103701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	24.6	20.74	3.7	60.05	31.26	46.62	25.35	26.09	15.61
Merged-chr7-27481735-3	chr7	27481234	27482234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5219.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	27.46	20.27	42.55	29.69	30.32	42.6	49.64	34.93	39.97
Merged-chr5-96177192-3	chr5	96176695	96177695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15205.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	36.04	20.27	35.15	35.09	37.32	49.03	29.57	27.41	19.36
Merged-chr5-21056218-3	chr5	21055723	21056723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-312.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	152.17	121.65	72.15	169.35	124.09	102.88	145.75	134.42	67.45
Merged-chr10-11343663-3	chr10	11343142	11344142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010146, exon 1 of 4)	exon (NM_010146, exon 1 of 4)	197.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	180.77	121.65	71.22	176.78	121.76	134.23	114.07	83.57	58.71
Merged-chr6-8412975-3	chr6	8412467	8413467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	96194.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	24.6	14.28	8.32	93.79	87.7	56.27	45.42	39.35	17.49
Merged-chr1-160212320-1	chr1	160211820	160212820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	572.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	244.27	248.36	201.64	241.55	315.83	223.45	204.9	253.36	157.38
Merged-chr15-9140426-3	chr15	9139912	9140912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013787)	promoter-TSS (NM_013787)	42.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	70.36	70.96	71.22	71.52	80.24	53.85	77.1	65.44	33.72
Merged-chr5-138622834-3	chr5	138622341	138623341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183025)	promoter-TSS (NM_183025)	-18.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	20.59	23.04	11.1	31.71	20.06	15.27	25.35	16.36	10.62
Merged-chr6-145303106-3	chr6	145302613	145303613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52561.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	233.97	236.38	162.79	205.11	218.33	233.1	276.72	357.27	211.71
Merged-chr11-104252271-1	chr11	104251771	104252771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001038609, intron 1 of 11)	intron (NM_001038609, intron 1 of 11)	20835.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	15.45	9.22	3.7	2.02	4.67	0.0	1.06	2.21	2.5
Merged-chr2-58567654-1	chr2	58567154	58568154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	320.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	33.75	18.43	41.62	33.74	16.79	37.78	32.74	14.59	14.36
Merged-chr10-80148408-1	chr10	80147908	80148908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347117, intron 1 of 7)	CpG	136.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	322.07	225.78	237.71	300.92	175.41	201.75	247.15	264.42	127.4
Merged-chr17-10326735-3	chr17	10326252	10327252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	2150.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	49.2	45.16	28.67	42.51	45.25	45.82	33.8	41.12	30.6
Merged-chr16-38239942-3	chr16	38239440	38240440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 11 of 11)	intron (NM_001347232, intron 11 of 11)	54884.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	23.45	22.12	9.25	25.64	18.19	20.09	11.62	19.9	13.74
Merged-chr16-38341833-3	chr16	38341320	38342320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081025)	promoter-TSS (NM_001081025)	40.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	25.17	16.59	5.55	20.92	8.86	8.84	16.9	11.5	1.25
Merged-chr8-69017597-3	chr8	69017101	69018101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71135.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	39.47	38.71	34.22	78.94	40.12	30.54	124.63	148.13	66.82
Merged-chr7-145284511-3	chr7	145284007	145285007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132642)	promoter-TSS (NR_132642)	-496.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	278.02	140.54	127.64	320.49	181.94	204.97	336.92	180.85	107.42
Merged-chrX-8252548-4	chrX	8252032	8253032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290430)	promoter-TSS (NM_001290430)	-126.0	NM_001290430	54632.0	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding	88.67	137.77	67.52	84.34	91.9	71.54	108.79	86.22	49.96
Merged-chr1-171617113-3	chr1	171616625	171617625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9715.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	154.45	85.71	51.8	157.88	130.62	102.08	85.55	92.41	36.22
Merged-chr16-87455010-3	chr16	87454520	87455520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	35.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	299.76	265.87	254.36	284.73	256.58	224.26	252.43	217.99	145.51
Merged-chr2-11588151-3	chr2	11587626	11588626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 8 of 11)	MTE2a|LTR|ERVL-MaLR	15073.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	111.55	138.7	67.52	115.38	137.15	124.59	128.85	154.76	61.2
Merged-chr9-118662678-3	chr9	118662170	118663170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 7 of 27)	intron (NM_133721, intron 7 of 27)	-49022.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	371.26	238.23	184.99	325.89	231.85	211.4	345.37	367.44	152.38
Merged-chr9-37208226-3	chr9	37207731	37208731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025464)	promoter-TSS (NM_025464)	8.0	NM_025464	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	39.47	69.58	42.55	80.29	46.18	63.5	44.36	54.83	41.84
Merged-chr8-116238840-3	chr8	116238337	116239337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-266178.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	10.87	8.29	1.85	8.77	10.26	8.84	5.28	11.5	8.74
Merged-chr18-82915027-2	chr18	82914524	82915524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	392.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	288.89	188.46	172.04	319.82	138.55	150.31	252.43	131.32	101.17
Merged-chr10-42277755-3	chr10	42277267	42278267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-1005	-1025.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	398.72	410.56	279.34	364.35	398.4	351.26	365.44	452.34	187.36
Merged-chr2-19628360-3	chr2	19627847	19628847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	29550.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	152.17	186.62	79.55	160.58	132.49	94.85	128.85	203.84	108.67
Merged-chr11-8702032-1	chr11	8701532	8702532	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37497.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.72	2.76	3.7	8.77	9.33	9.65	24.29	24.76	16.24
Merged-chr9-64023058-3	chr9	64022556	64023556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-997.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	30.89	34.1	31.45	35.76	29.39	59.48	77.1	73.4	28.73
Merged-chr13-37660273-3	chr13	37659763	37660763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165775.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	37.76	24.42	21.27	40.48	21.93	26.53	50.7	23.88	21.86
Merged-chr13-21750590-3	chr13	21750066	21751066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178211)	promoter-TSS (NM_178211)	-13.0	NM_178211	319160.0	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	42.33	38.71	33.3	32.39	21.46	35.37	38.02	48.2	60.58
Merged-chr13-52572681-3	chr13	52572188	52573188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046069, intron 1 of 3)	intron (NR_046069, intron 1 of 3)	537.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	356.96	246.06	198.87	423.05	216.93	258.82	358.05	313.94	144.89
Merged-chr15-100600113-3	chr15	100599619	100600619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304965)	promoter-TSS (NM_001304965)	-135.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	228.25	134.55	135.97	234.8	139.02	111.73	145.75	84.9	77.44
Merged-chr3-60080784-3	chr3	60080267	60081267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1102.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	8.01	10.14	0.0	4.72	3.73	3.22	9.51	7.52	3.75
Merged-chr18-39490896-3	chr18	39490395	39491395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	167.04	196.75	209.96	187.57	133.42	221.85	220.74	230.81	146.76
Merged-chr3-116007442-3	chr3	116006947	116007947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-2.0	NM_021388	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	343.23	298.59	249.74	347.48	272.44	347.24	342.2	307.75	264.18
Merged-chr9-37094310-1	chr9	37093810	37094810	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	53012.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	19.45	11.52	9.25	12.82	7.93	21.7	1.06	4.42	1.25
Merged-chr11-115824005-3	chr11	115823498	115824498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145438)	promoter-TSS (NM_145438)	-60.0	NM_145438	217325.0	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	12.01	9.22	5.55	22.27	16.79	24.11	14.79	9.73	6.25
Merged-chr17-6106460-3	chr17	6105967	6106967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	-363.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	118.99	90.77	64.75	99.18	67.18	90.02	123.57	74.73	89.93
Merged-chr18-32163452-1	chr18	32162952	32163952	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011946, exon 1 of 17)	5' UTR (NM_011946, exon 1 of 17)	363.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	418.74	393.51	279.34	338.03	429.65	254.0	361.22	302.44	192.35
Merged-chr17-6783192-3	chr17	6782701	6783701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	-421.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	191.64	205.97	87.87	212.54	195.93	149.5	171.1	137.96	93.05
Merged-chr7-126746303-3	chr7	126745800	126746800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-13326.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	108.69	135.01	88.8	186.22	135.75	176.83	158.43	214.45	129.28
Merged-chr12-34789242-3	chr12	34788740	34789740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	MLT1F|LTR|ERVL-MaLR	127855.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	57.78	65.43	49.02	52.63	47.12	66.71	48.58	57.04	44.34
Merged-chr7-141467801-3	chr7	141467295	141468295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-24.0	NR_152219	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	152.17	107.82	139.67	120.77	125.49	94.85	130.97	173.33	94.93
Merged-chr12-40445916-3	chr12	40445418	40446418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172575)	promoter-TSS (NM_172575)	-128.0	NM_178845	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	145.87	169.11	122.09	145.74	148.82	114.94	133.08	167.14	93.05
Merged-chr13-112748251-3	chr13	112747741	112748741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52536.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	9.15	4.61	11.1	14.84	6.53	10.45	23.24	12.82	18.74
Merged-chr7-28392828-3	chr7	28392316	28393316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026042)	promoter-TSS (NM_026042)	-126.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	147.02	127.64	127.64	117.4	98.43	122.98	115.12	112.75	79.94
Merged-chr4-48108807-3	chr4	48108318	48109318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16101.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	17.73	20.74	15.72	25.64	22.39	8.04	24.29	32.28	7.49
Merged-chr3-65528973-1	chr3	65528473	65529473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_027955, exon 2 of 2)	non-coding (NR_027955, exon 2 of 2)	441.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	303.19	285.23	391.26	383.24	376.01	363.31	340.09	362.13	221.71
Merged-chr9-78448255-3	chr9	78447773	78448773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026658)	promoter-TSS (NM_026658)	63.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	151.59	175.56	150.77	182.17	186.14	198.54	184.83	156.53	117.41
Merged-chr18-42262241-3	chr18	42261740	42262740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-169.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	82.38	72.34	52.72	66.12	55.05	53.05	70.76	79.15	39.35
Merged-chr17-70968926-4	chr17	70968473	70969473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21543.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	244.84	220.25	118.39	230.75	188.0	113.33	240.81	264.86	103.67
Merged-chr5-3647998-3	chr5	3647486	3648486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026033)	promoter-TSS (NM_026033)	-50.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	57.21	47.0	84.17	58.7	26.59	73.95	80.27	42.01	28.1
Merged-chr18-50128262-3	chr18	50127740	50128740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008292)	promoter-TSS (NM_008292)	39.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	65.79	92.62	90.65	109.3	113.83	91.63	110.9	111.43	76.19
Merged-chr8-85492459-3	chr8	85491919	85492919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173866)	promoter-TSS (NM_173866)	-198.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	67.5	64.05	43.47	64.1	69.04	47.42	67.6	76.05	19.36
Merged-chr8-117282328-3	chr8	117281837	117282837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25318.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	116.13	74.65	59.2	95.81	45.72	48.23	58.09	72.52	30.6
Merged-chr15-58325552-3	chr15	58325049	58326049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	48.05	32.72	18.5	41.16	34.06	35.37	34.85	43.33	21.86
Merged-chr5-117872343-3	chr5	117871858	117872858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5519.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	137.29	140.08	140.59	176.78	142.29	191.3	149.98	142.38	128.65
Merged-chr3-89177360-3	chr3	89176839	89177839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309909)	promoter-TSS (NM_001309909)	-52.0	NM_001309910	24045.0	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	37.76	73.26	33.3	33.74	43.39	49.83	41.19	36.26	22.48
Merged-chr13-47228436-3	chr13	47227961	47228961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	34458.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	183.63	190.76	99.89	207.81	200.6	162.37	128.85	155.2	91.18
Merged-chr14-20803712-3	chr14	20803192	20804192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9453.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	14.3	8.29	5.55	22.27	19.59	9.65	22.18	13.27	9.99
Merged-chr12-84222825-3	chr12	84222341	84223341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3960.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	56.63	26.26	12.95	85.69	48.98	11.25	46.47	32.72	7.49
Merged-chr9-90043082-3	chr9	90042574	90043574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-11193.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	115.55	100.91	60.12	95.81	77.44	67.52	217.57	253.8	114.91
Merged-chr10-117435598-3	chr10	117435079	117436079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11856.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	129.28	123.49	42.55	129.55	110.56	72.34	107.73	86.66	31.85
Merged-chr12-116460588-3	chr12	116460097	116461097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133762, exon 29 of 29)	exon (NM_133762, exon 29 of 29)	-25123.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	41.19	39.17	35.15	23.62	38.72	28.94	58.09	64.56	52.46
Merged-chr5-136199090-3	chr5	136198606	136199606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025774)	promoter-TSS (NM_025774)	-152.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	133.86	107.36	87.87	80.97	84.9	90.02	105.62	108.33	67.45
Merged-chr13-55479223-3	chr13	55478717	55479717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177371, intron 8 of 14)	intron (NM_001177371, intron 8 of 14)	-1441.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	25.74	14.28	17.57	17.54	18.66	20.09	23.24	11.94	3.75
Merged-chr5-113017211-3	chr5	113016713	113017713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1675.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	56.06	51.61	37.0	30.36	13.06	18.49	19.01	20.34	15.61
Merged-chr17-31855975-3	chr17	31855486	31856486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010831)	promoter-TSS (NM_010831)	-182.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	74.94	45.16	34.22	45.21	30.79	20.9	42.25	24.76	16.24
Merged-chr10-21889567-3	chr10	21889077	21890077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	7393.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	101.25	82.02	94.35	97.83	61.58	128.61	125.69	109.66	69.95
Merged-chr13-52583265-6	chr13	52582782	52583782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198977)	promoter-TSS (NM_001198977)	-155.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	200.79	143.76	144.29	226.71	178.67	192.91	208.07	222.85	125.53
Merged-chr4-129496799-3	chr4	129496308	129497308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5618.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	181.34	167.73	110.99	130.9	77.44	147.09	92.94	90.2	90.56
Merged-chrM-3670-1	chrM	3170	4170	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											291.18	247.9	35.15	153.84	56.91	28.13	91.89	40.68	37.47
Merged-chr1-135147533-3	chr1	135147030	135148030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 1 of 6)	CpG	696.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	279.16	279.24	338.53	321.84	348.02	281.33	293.62	283.43	196.1
Merged-chr7-6283754-3	chr7	6283254	6284254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2826.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	249.99	244.68	191.47	244.92	199.2	155.93	330.59	277.68	165.5
Merged-chr6-129402633-3	chr6	129402137	129403137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019985, intron 4 of 5)	intron (NM_019985, intron 4 of 5)	5340.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	50.91	48.38	37.92	67.47	28.46	48.23	66.54	51.73	39.35
Merged-chr8-75033829-5	chr8	75033335	75034335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136259, intron 1 of 15)	CpG	149.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	354.67	299.97	157.24	375.14	418.46	229.88	356.99	352.41	126.15
Merged-chr7-35172006-3	chr7	35171509	35172509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14376.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	6.29	3.69	0.0	8.1	2.33	4.02	5.28	2.65	1.87
Merged-chr11-109361976-3	chr11	109361504	109362504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-790.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	569.77	591.19	344.08	452.74	401.66	255.6	492.18	657.94	226.08
Merged-chr5-3343858-3	chr5	3343405	3344405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	12.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	175.05	175.56	103.59	197.69	191.27	154.33	173.21	233.91	113.04
Merged-chr18-79181546-1	chr18	79181046	79182046	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-72155.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	5.72	3.69	0.0	2.02	5.13	6.43	2.11	3.54	0.0
Merged-chr11-6444634-3	chr11	6444140	6445140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347064)	promoter-TSS (NM_001347064)	-197.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	104.69	70.5	57.35	74.22	48.98	57.07	72.88	55.27	41.22
Merged-chr16-18426495-3	chr16	18425985	18426985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	68.0	NM_013711	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	57.21	58.98	50.87	84.34	79.31	66.71	86.61	70.3	44.34
Merged-chr17-86114404-3	chr17	86113917	86114917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 10 of 20)	Lx8|LINE|L1	30758.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	14.3	23.04	7.4	33.74	17.73	12.86	10.56	18.13	8.74
Merged-chr7-3645107-3	chr7	3644597	3645597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-172.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	208.23	232.7	165.57	184.87	217.39	188.09	218.63	217.55	153.63
Merged-chr13-111980461-3	chr13	111979969	111980969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112533.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	72.65	49.3	16.65	124.15	125.02	99.67	31.69	34.49	6.25
Merged-chr9-50739423-3	chr9	50738917	50739917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025865)	TTS (NM_025865)	-1682.0	NM_001311069	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	8.58	1.84	5.55	4.72	6.53	4.82	5.28	0.44	5.0
Merged-chr17-27976510-1	chr17	27976010	27977010	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	67204.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	10.87	13.82	27.75	47.23	29.39	18.49	3.17	2.65	1.87
Merged-chr13-23543485-3	chr13	23542933	23543933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013548)	promoter-TSS (NM_013548)	11.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	110.41	134.55	89.72	117.4	83.51	57.87	122.52	140.61	86.81
Merged-chr4-120825782-3	chr4	120825281	120826281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277095)	promoter-TSS (NM_001277095)	-40.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	437.62	417.01	278.41	383.24	400.26	314.28	376.0	366.56	257.93
Merged-chr5-114639560-3	chr5	114639065	114640065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022017, intron 3 of 15)	intron (NM_022017, intron 3 of 15)	18856.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	18.31	4.61	5.55	14.84	6.53	7.23	7.39	3.98	2.5
Merged-chr19-42005787-3	chr19	42005281	42006281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	L3|LINE|CR1	24018.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	125.28	117.04	94.35	120.1	97.5	89.22	72.88	95.51	71.2
Merged-chr3-27682741-1	chr3	27682241	27683241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001356953, exon 2 of 27)	5' UTR (NM_001356953, exon 2 of 27)	27711.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	40.62	30.87	16.65	8.1	2.8	12.86	4.22	2.21	2.5
Merged-chr2-160622101-3	chr2	160621593	160622593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23804.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	92.67	87.09	83.25	82.32	55.98	106.1	60.2	72.07	50.59
Merged-chr19-32224900-3	chr19	32224388	32225388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13875.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	114.98	132.71	51.8	188.92	253.31	147.9	98.23	124.25	91.18
Merged-chr2-30965789-3	chr2	30965288	30966288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	2130.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	202.51	155.28	120.24	188.92	153.48	135.84	202.79	232.58	114.29
Merged-chr8-26119306-3	chr8	26118814	26119814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207659)	promoter-TSS (NM_207659)	-54.0	NM_001357292	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	270.01	258.96	223.84	280.01	313.96	225.06	249.26	227.72	166.12
Merged-chr2-165317062-3	chr2	165316582	165317582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302754)	promoter-TSS (NM_001302754)	-731.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	140.15	113.81	89.72	157.88	135.75	126.19	108.79	127.79	63.08
Merged-chr16-24936048-3	chr16	24935538	24936538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-123601.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	56.06	73.26	47.17	59.38	56.91	57.87	38.02	54.83	36.85
Merged-chr10-18943554-3	chr10	18943057	18944057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	68406.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	25.74	9.22	3.7	30.36	18.66	6.43	20.07	19.01	2.5
Merged-chr10-13500703-3	chr10	13500231	13501231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330198)	promoter-TSS (NM_001330198)	-297.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	285.45	335.45	198.87	274.61	309.76	208.18	270.38	349.31	151.14
Merged-chr5-24842043-2	chr5	24841537	24842537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	CpG	324.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	383.28	392.59	287.66	327.24	328.89	270.07	331.64	319.24	209.84
Merged-chr7-84679457-3	chr7	84678973	84679973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360579)	promoter-TSS (NM_001360579)	-77.0	NM_001360581	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	16.02	23.96	20.35	16.19	18.66	20.09	32.74	34.49	23.73
Merged-chr2-27758563-3	chr2	27758072	27759072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	47989.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	117.27	72.34	66.6	98.51	65.31	64.3	82.38	65.0	41.84
Merged-chr12-69985760-3	chr12	69985270	69986270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	1232.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	44.62	40.55	21.27	60.72	44.32	40.19	77.1	70.75	28.1
Merged-chr15-59829935-3	chr15	59829457	59830457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34998.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	40.04	46.54	47.17	47.23	37.79	36.97	58.09	45.54	44.97
Merged-chr9-119088413-4	chr9	119087935	119088935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293648)	promoter-TSS (NM_001293648)	-174.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	16.02	24.42	12.95	34.41	20.06	41.8	66.54	51.73	30.6
Merged-chr1-162224971-3	chr1	162224457	162225457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002870, exon 1 of 1)	non-coding (NR_002870, exon 1 of 1)	1589.0	NR_029796	387210.0		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	7.44	7.37	4.62	25.64	18.19	16.08	6.34	12.38	4.37
Merged-chr11-3535489-3	chr11	3534977	3535977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159284, intron 3 of 21)	intron (NM_001159284, intron 3 of 21)	3815.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	24.6	20.74	24.97	31.04	19.59	55.46	17.96	15.48	26.85
Merged-chr15-84988112-3	chr15	84987656	84988656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033273)	promoter-TSS (NM_001033273)	-185.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	155.6	124.87	116.54	154.51	114.29	93.24	164.76	136.63	61.2
Merged-chr19-37147351-3	chr19	37146851	37147851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	PB1D9|SINE|Alu	-26492.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	66.36	46.54	27.75	64.77	40.12	32.96	68.65	72.96	44.34
Merged-chr18-35748487-3	chr18	35748010	35749010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-7956.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	71.51	61.28	39.77	44.53	33.59	45.82	45.42	34.49	55.58
Merged-chr9-43106019-3	chr9	43105508	43106508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027144)	promoter-TSS (NM_027144)	-290.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	215.66	177.86	143.37	230.75	164.68	172.81	207.01	133.09	115.54
Merged-chr10-111782528-1	chr10	111782028	111783028	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	91848.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	11.44	9.68	25.9	11.47	8.86	17.68	9.51	4.42	8.74
Merged-chr15-6390847-3	chr15	6390319	6391319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4071.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	46.91	63.13	36.07	47.9	39.65	55.46	51.75	46.87	30.6
Merged-chrX-85776808-3	chrX	85776293	85777293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294138)	promoter-TSS (NM_001294138)	26.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	87.52	88.93	64.75	112.68	85.37	106.1	119.35	113.19	60.58
Merged-chr2-80267112-3	chr2	80266612	80267612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25358.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	8.01	3.23	1.85	6.75	6.06	4.02	7.39	3.1	3.12
Merged-chr18-73703848-3	chr18	73703356	73704356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008540)	promoter-TSS (NM_008540)	-70.0	NR_155448	105246496.0	Mm.109270	NR_155448		4930578L24Rik	-	RIKEN cDNA 4930578L24 gene	ncRNA	77.8	59.44	90.65	102.56	49.92	70.73	94.0	39.35	52.46
Merged-chr10-79916954-3	chr10	79916441	79917441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177994)	promoter-TSS (NM_177994)	-11.0	NM_177994	109284.0	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	113.84	95.38	108.22	97.16	63.91	107.71	144.7	99.49	89.31
Merged-chr11-51289997-1	chr11	51289497	51290497	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	77.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	13.16	7.83	1.85	8.77	5.13	5.63	7.39	3.54	5.0
Merged-chr16-4964364-3	chr16	4963869	4964869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271586)	promoter-TSS (NM_001271586)	81.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	188.78	147.91	110.99	161.93	143.68	91.63	167.93	130.0	89.31
Merged-chrX-10871790-3	chrX	10871298	10872298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154433.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	56.06	39.63	14.8	41.16	45.72	24.11	33.8	42.45	38.1
Merged-chr6-122339789-5	chr6	122339328	122340328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-171.0	NR_073364	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	46.34	25.8	42.55	64.77	25.66	35.37	52.81	22.11	29.35
Merged-chr16-16573357-3	chr16	16572855	16573855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-13136.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	82.38	144.69	109.14	107.28	103.1	98.06	109.84	114.96	89.31
Merged-chr11-53301068-1	chr11	53300568	53301568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-589.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	363.83	442.81	288.59	369.07	385.34	311.07	321.08	412.98	237.32
Merged-chr8-108743371-3	chr8	108742864	108743864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28720.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	24.03	15.67	12.95	25.64	9.33	14.47	10.56	4.86	8.74
Merged-chr2-52930261-3	chr2	52929845	52930845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	72477.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	21.17	29.49	19.42	44.53	17.26	20.9	31.69	17.69	21.86
Merged-chr7-59228654-3	chr7	59228157	59229157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173010)	promoter-TSS (NM_173010)	-93.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	288.89	296.75	269.16	284.73	315.36	227.47	254.54	235.23	225.45
Merged-chr8-41043736-3	chr8	41043236	41044236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-1805.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	26.89	26.26	10.17	31.04	20.99	8.84	33.8	30.95	24.36
Merged-chr11-26640662-3	chr11	26640151	26641151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46731.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	83.52	115.66	57.35	76.24	73.71	57.07	97.17	118.06	73.69
Merged-chr3-95668987-5	chr3	95668421	95669421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10200.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	284.88	283.38	191.47	360.3	252.85	242.74	258.77	290.95	164.25
Merged-chr7-27446820-3	chr7	27446299	27447299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032610)	promoter-TSS (NM_032610)	-210.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	64.07	28.57	17.57	67.47	27.52	18.49	41.19	28.74	8.12
Merged-chr1-91046442-3	chr1	91045937	91046937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-7007.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	98.97	81.56	50.87	66.8	40.59	45.01	43.3	47.75	33.72
Merged-chrX-142537760-3	chrX	142537259	142538259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142588.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	54.92	64.51	54.57	56.68	52.25	56.27	39.08	39.35	43.09
Merged-chr10-98609634-3	chr10	98609154	98610154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257787.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	31.46	28.57	14.8	24.96	18.19	17.68	15.84	18.57	18.74
Merged-chr8-120369123-3	chr8	120368627	120369627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119739.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	11.44	7.37	6.47	12.82	8.4	11.25	13.73	4.42	6.25
Merged-chr5-33629777-3	chr5	33629301	33630301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-166.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	151.02	138.24	148.92	138.99	142.75	108.51	116.18	127.34	89.93
Merged-chr5-113773932-3	chr5	113773454	113774454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 1 of 4)	intron (NM_025526, intron 1 of 4)	1142.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	104.11	115.66	76.77	128.2	41.05	63.5	145.75	122.92	64.95
Merged-chr7-80092638-3	chr7	80092134	80093134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-17377.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	39.47	51.61	65.67	29.69	25.19	45.82	31.69	26.09	31.85
Merged-chr3-89103172-3	chr3	89102620	89103620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1153.0	NM_001253751	110196.0	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	70.36	82.48	33.3	58.7	34.52	40.19	50.7	45.54	28.73
Merged-chr9-45906935-3	chr9	45906434	45907434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310839)	promoter-TSS (NM_001310839)	-23.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	263.72	293.98	273.79	209.16	234.19	238.73	293.62	297.58	218.58
Merged-chrUn_JH584304-30954-1	chrUn_JH584304	30454	31454	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28735.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	82.38	45.1	0.0
Merged-chr19-55236213-3	chr19	55235717	55236717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5019.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	16.02	13.36	9.25	26.99	17.26	19.29	17.96	23.88	6.87
Merged-chr18-84951613-3	chr18	84951109	84952109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-85.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	171.62	214.26	136.89	151.81	167.94	213.81	207.01	242.31	125.53
Merged-chr17-47754353-3	chr17	47753872	47754872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	16441.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	158.46	146.07	119.32	162.61	114.29	126.19	204.9	164.93	111.79
Merged-chr4-42968869-1	chr4	42968369	42969369	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1077.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	5.15	4.15	3.7	0.67	1.87	1.61	29.57	11.05	13.12
Merged-chr9-108340563-3	chr9	108340073	108341073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329528)	TTS (NM_001329528)	1493.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	350.1	374.62	229.39	302.27	218.33	213.81	346.43	385.13	215.46
Merged-chr14-76414572-3	chr14	76414046	76415046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310646)	promoter-TSS (NM_001310646)	-415.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	155.6	73.73	69.37	138.99	87.7	113.33	114.07	51.29	33.1
Merged-chr1-91459458-3	chr1	91458948	91459948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011066)	promoter-TSS (NM_011066)	-120.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	268.29	215.19	94.35	213.21	167.01	92.44	210.18	175.54	80.56
Merged-chr16-38198402-3	chr16	38197903	38198903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 7 of 11)	MTC|LTR|ERVL-MaLR	96421.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	34.9	61.28	23.12	37.11	14.93	24.11	20.07	23.43	23.11
Merged-chr2-31170468-3	chr2	31169956	31170956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 4 of 17)	intron (NM_178760, intron 4 of 17)	18140.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	25.74	25.34	19.42	26.99	14.0	24.92	24.29	17.24	31.85
Merged-chr4-94556760-3	chr4	94556231	94557231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026368)	promoter-TSS (NM_026368)	65.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	168.76	166.8	97.12	180.15	135.75	147.9	144.7	147.68	72.45
Merged-chr19-47330890-3	chr19	47330397	47331397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-57308.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	70.93	46.54	31.45	65.45	34.06	12.86	60.2	29.18	10.62
Merged-chr6-87255860-3	chr6	87255364	87256364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_054041, exon 10 of 18)	exon (NM_054041, exon 10 of 18)	79911.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	10.3	3.23	4.62	6.07	0.93	1.61	5.28	3.98	1.25
Merged-chr18-60716904-3	chr18	60716394	60717394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	10672.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	39.47	19.81	18.5	33.06	19.13	40.19	15.84	28.3	24.98
Merged-chr7-139213286-3	chr7	139212770	139213770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-5.0	NM_001143755	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	290.03	319.32	141.52	276.63	268.71	163.97	201.73	236.56	123.66
Merged-chr14-72558123-1	chr14	72557623	72558623	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 19 of 25)	intron (NM_207636, intron 19 of 25)	151880.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.15	11.52	12.02	5.4	13.53	16.08	7.39	13.27	8.74
Merged-chr10-60346826-3	chr10	60346344	60347344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159572)	promoter-TSS (NM_001159572)	-7.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	78.94	53.91	56.42	86.36	62.51	66.71	86.61	76.05	36.22
Merged-chr1-93825397-3	chr1	93824905	93825905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310767, exon 1 of 10)	5' UTR (NM_001310767, exon 1 of 10)	165.0	NM_001310767	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	132.72	160.81	142.44	149.11	117.09	223.45	155.26	133.98	94.3
Merged-chr9-123461995-3	chr9	123461509	123462509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001348167, exon 21 of 21)	3' UTR (NM_001348167, exon 21 of 21)	-16692.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	28.03	37.78	32.37	20.92	10.26	24.11	14.79	15.03	48.71
Merged-chr14-50820256-1	chr14	50819756	50820756	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009632, intron 13 of 15)	intron (NM_009632, intron 13 of 15)	12340.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	5.15	5.53	16.65	2.02	6.53	8.04	118.29	151.22	70.57
Merged-chr12-112864995-3	chr12	112864486	112865486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4070.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	65.21	69.12	49.95	56.0	18.66	45.82	38.02	27.86	18.11
Merged-chr16-55812779-2	chr16	55812303	55813303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	9335.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	15.45	13.82	11.1	12.82	9.33	25.72	10.56	5.75	13.74
Merged-chr12-69448081-3	chr12	69447575	69448575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27475.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	345.52	262.19	193.32	317.12	212.26	208.18	297.84	374.52	158.63
Merged-chr2-61585611-3	chr2	61585115	61586115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	7029.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	38.33	39.17	34.22	60.05	40.59	29.74	46.47	50.41	23.11
Merged-chr1-161969160-3	chr1	161968660	161969660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204905)	promoter-TSS (NM_001204905)	-12.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	110.98	96.76	59.2	127.52	97.5	83.59	100.34	66.33	48.71
Merged-chr14-30577853-1	chr14	30577353	30578353	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5704.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.57	0.92	1.85	2.7	2.33	1.61	81.33	106.12	76.19
Merged-chr3-54735464-3	chr3	54734945	54735945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	-81.0	NM_001163570	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	118.42	111.97	108.22	101.21	89.1	128.61	119.35	95.95	105.55
Merged-chr1-119526279-3	chr1	119525788	119526788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146103, exon 1 of 1)	5' UTR (NM_146103, exon 1 of 1)	134.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	128.71	114.74	91.57	143.71	128.29	143.88	120.41	77.82	64.33
Merged-chr15-88863202-4	chr15	88862702	88863702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145478, exon 4 of 6)	exon (NM_145478, exon 4 of 6)	1008.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	241.41	183.39	191.47	274.61	217.39	225.06	171.1	109.66	93.05
Merged-chr1-180936933-2	chr1	180936421	180937421	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010094, intron 2 of 3)	intron (NM_010094, intron 2 of 3)	1899.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	1.14	0.92	1.85	60.72	39.19	37.78	36.97	37.14	10.62
Merged-chr19-44069796-3	chr19	44069270	44070270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164359)	promoter-TSS (NM_001164359)	5.0	NM_001164359	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	194.5	150.68	149.84	148.44	112.9	121.37	133.08	130.0	81.81
Merged-chr14-102980663-3	chr14	102980145	102981145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	1987.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	208.23	255.74	120.24	157.21	159.55	109.32	252.43	308.19	145.51
Merged-chr1-89555572-3	chr1	89555069	89556069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	100758.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	22.88	9.68	3.7	48.58	16.33	10.45	20.07	11.94	7.49
Merged-chr15-34046549-3	chr15	34046036	34047036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36183.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	87.52	67.27	47.17	87.04	55.51	69.93	83.44	63.23	60.58
Merged-chr3-93552557-3	chr3	93552069	93553069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	29.75	32.25	24.05	22.94	19.13	24.92	15.84	8.4	13.74
Merged-chr19-6408948-3	chr19	6408463	6409463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 12 of 16)	intron (NM_011242, intron 12 of 16)	8380.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	20.59	14.28	13.87	15.52	8.4	8.04	8.45	15.03	19.36
Merged-chr3-40949693-3	chr3	40949178	40950178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040399)	promoter-TSS (NM_001040399)	-953.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	53.77	15.67	42.55	50.6	13.06	18.49	51.75	16.8	23.73
Merged-chr17-51178743-3	chr17	51178234	51179234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	CpG	618.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	535.44	477.37	377.38	566.76	458.11	359.29	540.77	454.99	256.68
Merged-chr15-103239504-3	chr15	103239013	103240013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	339.0	NM_001358950	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	118.42	100.45	73.07	90.41	56.45	77.97	99.28	92.86	61.83
Merged-chr10-98776465-3	chr10	98775969	98776969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138173.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	199.65	122.11	97.12	186.22	71.84	114.14	155.26	114.52	103.05
Merged-chr14-121929533-3	chr14	121929047	121930047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13773.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	215.09	213.8	125.79	158.56	152.55	94.04	165.82	175.54	129.9
Merged-chr19-5929747-3	chr19	5929227	5930227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4911.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	307.76	228.55	125.79	265.84	166.54	117.35	175.33	210.47	101.17
Merged-chr13-101760466-3	chr13	101759966	101760966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	7751.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	50.34	40.55	27.75	20.92	23.79	21.7	30.63	23.43	22.48
Merged-chr5-23783652-3	chr5	23783158	23784158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289780)	promoter-TSS (NM_001289780)	53.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	17.73	18.89	12.95	18.22	11.2	17.68	13.73	7.52	2.5
Merged-chr16-4863105-3	chr16	4862608	4863608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030192, exon 12 of 16)	exon (NM_030192, exon 12 of 16)	16743.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	14.3	7.37	1.85	14.84	7.46	9.65	9.51	6.19	9.99
Merged-chr11-98148942-3	chr11	98148450	98149450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028149, intron 1 of 14)	intron (NM_028149, intron 1 of 14)	666.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	110.98	131.32	159.09	120.1	74.64	160.76	164.76	120.71	87.43
Merged-chrX-8176030-3	chrX	8175508	8176508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172478, exon 1 of 6)	5' UTR (NM_172478, exon 1 of 6)	173.0	NM_001166437	209815.0	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding	89.81	82.02	41.62	104.58	82.57	53.05	128.85	120.27	48.71
Merged-chr4-132308634-3	chr4	132308128	132309128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029468)	promoter-TSS (NR_029468)	-50.0	NR_029468	100039864.0	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	217.95	161.27	110.99	201.74	149.75	149.5	222.86	229.48	116.79
Merged-chr16-49905668-1	chr16	49905168	49906168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	50014.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	186.49	230.39	118.39	246.95	208.53	213.81	292.56	293.6	143.02
Merged-chr6-5298327-3	chr6	5297818	5298818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183308)	promoter-TSS (NM_183308)	55.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	127.0	109.21	80.47	108.63	96.57	95.65	152.09	92.41	95.55
Merged-chr10-59616699-3	chr10	59616208	59617208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033259)	promoter-TSS (NM_001033259)	-16.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	32.61	14.75	23.12	39.81	18.66	23.31	48.58	18.13	17.49
Merged-chr1-178369468-3	chr1	178368974	178369974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31659.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	220.24	199.98	116.54	201.74	174.01	161.56	164.76	217.55	97.43
Merged-chr11-102248820-3	chr11	102248320	102249320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	-62.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	31.46	22.12	22.2	34.41	22.86	12.86	34.85	17.24	14.99
Merged-chr17-17587576-3	chr17	17587101	17588101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	36888.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	102.4	118.42	77.7	92.44	99.83	107.71	110.9	143.7	88.68
Merged-chr3-122573643-3	chr3	122573134	122574134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31953.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	31.46	70.96	55.5	37.78	32.66	35.37	81.33	82.69	69.32
Merged-chr13-67081415-3	chr13	67080935	67081935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012449, intron 1 of 2)	intron (NM_001012449, intron 1 of 2)	110.0	NM_001012448	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	84.66	86.63	76.77	65.45	95.17	95.65	105.62	97.28	68.07
Merged-chr12-85366600-3	chr12	85366101	85367101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	8116.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	122.99	111.51	99.89	112.68	111.5	100.47	115.12	107.89	70.57
Merged-chr9-53667080-3	chr9	53666559	53667559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027807, exon 1 of 19)	exon (NM_027807, exon 1 of 19)	448.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	482.24	505.48	297.84	421.02	541.15	369.74	441.49	433.77	221.71
Merged-chr15-27630758-3	chr15	27630260	27631260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013792)	promoter-TSS (NM_001013792)	-67.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	135.0	100.45	103.59	130.9	83.97	72.34	139.42	88.88	76.19
Merged-chr5-105507918-2	chr5	105507422	105508422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11549.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	95.53	70.5	58.27	91.76	79.77	69.13	3.17	2.21	9.99
Merged-chr11-106084312-3	chr11	106083811	106084811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011947)	promoter-TSS (NM_011947)	-591.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	171.62	139.62	159.09	144.39	101.23	122.98	127.8	121.6	101.8
Merged-chr1-165736255-3	chr1	165735744	165736744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27514.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	56.06	47.46	58.27	69.5	48.05	69.13	65.48	74.28	44.34
Merged-chr2-101629034-3	chr2	101628532	101629532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026592)	promoter-TSS (NM_026592)	-46.0	NM_026592	68170.0	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	35.47	46.08	33.3	32.39	34.99	37.78	34.85	31.84	31.23
Merged-chr3-103058318-3	chr3	103057797	103058797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010937)	promoter-TSS (NM_010937)	12.0	NM_010937	18176.0	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	219.67	228.55	209.96	187.57	208.06	222.65	272.5	252.92	147.39
Merged-chr2-66256655-3	chr2	66256147	66257147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290669)	promoter-TSS (NM_001290669)	-30.0	NM_001290669	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	23.45	20.27	12.95	35.76	24.26	34.56	31.69	24.76	13.12
Merged-chr16-15863406-3	chr16	15862918	15863918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029354)	promoter-TSS (NM_029354)	-49.0	NM_001359003	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	106.4	86.17	86.02	89.74	88.64	93.24	98.23	106.56	74.32
Merged-chr5-135715784-1	chr5	135715284	135716284	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	20105.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	5.72	5.07	5.55	14.84	3.73	11.25	8.45	3.1	8.74
Merged-chrX-52053703-1	chrX	52053203	52054203	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008150, exon 9 of 9)	exon (NM_008150, exon 9 of 9)	-80931.0	NM_028851	74279.0	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	1.14	1.38	0.0	4.72	0.93	0.0	0.0	0.0	1.87
Merged-chr17-35838330-3	chr17	35837830	35838830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011655)	promoter-TSS (NM_011655)	-29.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	55.49	79.72	55.5	35.09	36.39	78.77	71.82	84.9	46.22
Merged-chr15-66816665-3	chr15	66816158	66817158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	15171.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	175.05	188.92	102.67	153.16	117.09	122.18	76.05	99.05	83.06
Merged-chr12-99390900-3	chr12	99390412	99391412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	59162.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	119.56	118.88	63.82	124.82	84.9	68.32	90.83	90.64	80.56
Merged-chrX-8168385-3	chrX	8167865	8168865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172478, intron 3 of 5)	(CA)n|Simple_repeat|Simple_repeat	7816.0	NM_001166437	209815.0	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding	22.31	27.65	30.52	24.29	11.2	16.88	26.4	28.74	11.24
Merged-chr7-28373401-3	chr7	28372901	28373901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083912)	promoter-TSS (NM_001083912)	-739.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	129.28	114.27	62.9	113.35	73.24	77.97	85.55	109.66	90.56
Merged-chr15-86169248-3	chr15	86168746	86169746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16482.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	426.75	411.02	304.31	522.23	485.17	355.27	465.78	591.18	251.68
Merged-chr7-29859994-3	chr7	29859494	29860494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172740)	promoter-TSS (NM_172740)	15.0	NM_172740	233058.0	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	17.73	12.44	12.95	16.19	18.66	20.9	21.12	11.5	19.98
Merged-chr2-11589025-3	chr2	11588524	11589524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_152824, exon 8 of 12)	exon (NM_152824, exon 8 of 12)	14175.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	179.62	156.21	149.84	182.85	173.07	176.03	202.79	217.1	114.91
Merged-chr9-71485945-3	chr9	71485445	71486445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178602)	promoter-TSS (NM_178602)	38.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	201.36	263.57	182.22	197.02	212.26	207.38	220.74	125.13	108.04
Merged-chr3-21937459-3	chr3	21936954	21937954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139198.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	53.2	64.05	42.55	64.1	56.45	50.64	79.21	78.26	34.35
Merged-chr19-46343922-3	chr19	46343408	46344408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1146.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	66.93	41.47	30.52	59.38	41.99	25.72	45.42	32.28	29.98
Merged-chr18-68252988-3	chr18	68252497	68253497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	7976.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	16.02	21.66	21.27	8.77	15.39	25.72	16.9	8.84	14.36
Merged-chr17-36837092-3	chr17	36836580	36837580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-66.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	327.21	299.51	172.04	292.15	233.25	186.48	343.26	290.95	154.88
Merged-chr11-79119000-3	chr11	79118495	79119495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	27478.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	61.21	43.77	34.22	68.82	41.99	39.39	61.26	42.01	29.35
Merged-chr11-50244055-3	chr11	50243564	50244564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5532.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	46.34	28.11	29.6	83.66	37.79	53.85	65.48	62.35	39.35
Merged-chr5-66147533-3	chr5	66147035	66148035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	B3A|SINE|B2	3443.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	25.17	22.12	12.95	41.83	20.99	30.54	32.74	25.65	13.74
Merged-chr11-100626372-2	chr11	100625882	100626882	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3427.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	147.59	108.75	112.84	104.58	63.45	109.32	194.34	218.87	93.05
Merged-chr2-27232528-3	chr2	27232033	27233033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138665, intron 8 of 20)	intron (NM_138665, intron 8 of 20)	14770.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	14.3	5.53	1.85	11.47	5.6	5.63	7.39	2.65	4.37
Merged-chr16-13286670-3	chr16	13286159	13287159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122667, intron 2 of 16)	RMER19A|LTR|ERVK	21580.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	52.63	36.4	56.42	40.48	36.39	42.6	22.18	23.88	18.11
Merged-chr3-103916676-3	chr3	103916174	103917174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	2554.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	61.21	64.51	48.1	33.74	26.59	53.05	59.15	72.52	36.22
Merged-chr16-4723013-3	chr16	4722508	4723508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-3353.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	180.77	150.68	108.22	165.98	92.84	178.44	191.17	233.02	123.66
Merged-chr5-64205866-3	chr5	64205370	64206370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-24487.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	133.86	84.32	71.22	154.51	100.3	116.55	160.54	130.44	101.8
Merged-chr3-137865764-3	chr3	137865266	137866266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316995, intron 3 of 4)	CpG-9623	1279.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	85.81	78.33	66.6	71.52	46.65	65.11	47.53	63.23	68.07
Merged-chr7-27508154-3	chr7	27507625	27508625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 5 of 5)	CpG-12884	8801.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	42.33	56.22	59.2	51.28	33.59	97.26	66.54	52.62	58.71
Merged-chr9-50818309-3	chr9	50817821	50818821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045601, intron 12 of 13)	intron (NR_045601, intron 12 of 13)	-38603.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	20.02	20.74	21.27	15.52	10.73	20.09	12.67	11.5	9.99
Merged-chr16-30065268-3	chr16	30064764	30065764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008235)	promoter-TSS (NM_008235)	-93.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	86.95	116.12	50.87	105.93	120.36	91.63	114.07	153.43	61.83
Merged-chr14-19418823-3	chr14	19418324	19419324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	183763.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	109.83	469.54	92.5	149.11	609.26	117.35	283.06	255.57	88.68
Merged-chr6-120174464-4	chr6	120173936	120174936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-19387.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	213.95	189.38	110.07	248.97	197.33	191.3	148.92	157.41	118.66
Merged-chr15-58746350-3	chr15	58745858	58746858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77069.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	177.91	157.13	97.12	170.03	112.43	115.75	202.79	205.61	90.56
Merged-chr17-44105238-3	chr17	44104724	44105724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	584.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	101.83	111.05	95.27	82.99	43.85	84.4	130.97	112.75	98.05
Merged-chr10-67611115-3	chr10	67610618	67611618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-39159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	24.03	12.44	9.25	18.89	12.13	11.25	29.57	12.38	14.99
Merged-chr10-127481462-3	chr10	127480962	127481962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-20224.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	190.49	128.56	122.09	159.91	118.96	146.29	126.74	151.66	100.55
Merged-chr14-21822952-3	chr14	21822455	21823455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8606.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	82.95	81.1	82.32	93.79	100.3	91.63	95.06	101.26	46.22
Merged-chr10-117719141-3	chr10	117718625	117719625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-8367.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	122.42	68.2	68.45	112.0	49.45	91.63	135.19	106.56	73.07
Merged-chr11-44478661-3	chr11	44478170	44479170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-8122.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	25.74	40.55	22.2	22.27	19.13	40.19	45.42	30.95	31.23
Merged-chr1-189871659-1	chr1	189871159	189872159	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	50632.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	6.86	4.15	1.85	6.07	8.4	14.47	2.11	6.19	6.25
Merged-chr14-32174343-3	chr14	32173843	32174843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033988, intron 6 of 9)	intron (NM_001033988, intron 6 of 9)	8554.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	80.66	115.66	62.9	109.98	90.04	97.26	127.8	115.41	54.96
Merged-chr4-131861483-1	chr4	131860983	131861983	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025297, intron 5 of 9)	intron (NM_025297, intron 5 of 9)	-12156.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	28.6	38.25	33.3	45.88	23.79	33.76	39.08	26.97	25.61
Merged-chr1-155158651-3	chr1	155158167	155159167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021433)	promoter-TSS (NM_021433)	-36.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	118.42	76.49	50.87	107.28	76.97	73.95	113.01	69.86	44.34
Merged-chr17-34120467-3	chr17	34119978	34120978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037970)	promoter-TSS (NR_037970)	-578.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	646.99	656.62	449.53	630.19	604.59	478.25	530.21	601.35	378.46
Merged-chr15-95805212-3	chr15	95804726	95805726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	14383.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	243.69	200.9	98.05	268.54	211.79	137.45	197.51	184.83	100.55
Merged-chr12-26460264-3	chr12	26459753	26460753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3801.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	100.11	83.86	59.2	80.29	56.91	69.13	133.08	101.26	32.48
Merged-chr14-34310512-3	chr14	34310024	34311024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008133)	promoter-TSS (NM_008133)	-7.0	NM_001360074	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	159.6	219.79	148.92	153.16	190.8	151.11	166.88	149.89	108.67
Merged-chr16-76337101-3	chr16	76336620	76337620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	35929.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	87.52	66.81	60.12	70.17	39.65	36.17	74.99	80.03	17.49
Merged-chr17-83527874-3	chr17	83527370	83528370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-13537.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	33.18	29.03	31.45	47.23	43.85	69.13	48.58	71.19	48.09
Merged-chr9-100644234-3	chr9	100643735	100644735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 1 of 33)	CpG	787.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	198.5	193.53	214.59	199.04	172.61	150.31	235.53	132.65	128.03
Merged-chr15-79690596-3	chr15	79690086	79691086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-310.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	120.13	99.53	88.8	103.91	74.17	61.89	119.35	113.19	67.45
Merged-chr5-36720913-3	chr5	36720407	36721407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24886.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	52.63	57.6	42.55	86.36	90.5	70.73	79.21	99.93	56.21
Merged-chr11-44470556-3	chr11	44470055	44471055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-7.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	243.12	215.19	179.44	238.18	215.99	145.49	316.86	344.89	146.76
Merged-chr9-114812153-3	chr9	114811649	114812649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	RSINE1|SINE|B4	-30156.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	14.87	11.06	12.95	22.27	22.86	24.92	28.52	17.69	8.74
Merged-chr9-58246242-3	chr9	58245759	58246759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 2 of 7)	intron (NM_008884, intron 2 of 7)	3527.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	19.45	29.49	3.7	19.57	11.2	28.94	21.12	15.92	9.99
Merged-chr2-29739627-3	chr2	29739118	29740118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039087, exon 26 of 26)	3' UTR (NM_001039087, exon 26 of 26)	-21910.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	53.77	64.05	43.47	76.24	67.18	92.44	50.7	70.3	48.71
Merged-chr2-52763227-3	chr2	52762768	52763768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-21119.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	29.17	27.19	17.57	29.69	24.26	25.72	40.14	44.66	29.98
Merged-chr6-97829368-5	chr6	97828857	97829857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	22299.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	98.97	149.29	107.29	150.46	92.84	135.84	184.83	172.0	120.53
Merged-chr1-60941457-3	chr1	60940962	60941962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32437.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	36.61	47.0	37.92	41.16	36.85	56.27	43.3	64.11	52.46
Merged-chr6-141070088-3	chr6	141069579	141070579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179190.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	21.17	8.29	16.65	20.92	8.4	9.65	11.62	5.75	17.49
Merged-chr2-132686968-3	chr2	132686474	132687474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358260)	promoter-TSS (NM_001358260)	43.0	NM_001358260	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	82.95	94.46	61.97	122.8	69.98	106.1	136.25	148.13	86.81
Merged-chr14-61681389-3	chr14	61680853	61681853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1020.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	458.79	389.36	271.94	416.3	351.28	272.48	335.87	424.04	235.45
Merged-chr18-11657363-3	chr18	11656861	11657861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045526)	promoter-TSS (NR_045526)	12.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	209.94	292.14	215.51	160.58	228.59	184.87	215.46	199.86	220.46
Merged-chr16-21375433-3	chr16	21374935	21375935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	-42079.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	20.02	13.36	12.95	14.84	6.53	12.86	16.9	7.52	10.62
Merged-chr13-24463937-3	chr13	24463421	24464421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 13 of 16)	intron (NM_001111110, intron 13 of 16)	48799.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	37.76	33.64	21.27	43.18	40.59	36.97	60.2	60.58	40.59
Merged-chr15-53328252-1	chr15	53327752	53328752	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	17931.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.58	4.61	1.85	3.37	7.93	3.22	2.11	1.77	6.25
Merged-chr6-54679358-2	chr6	54678859	54679859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-2265.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	117.27	125.33	64.75	114.03	69.98	83.59	2.11	1.33	3.75
Merged-chr19-47465670-3	chr19	47465196	47466196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1285.0	NM_008018	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	30.32	33.64	21.27	59.38	39.19	26.53	35.91	30.07	20.61
Merged-chr1-55088195-3	chr1	55087700	55088700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008303)	promoter-TSS (NM_008303)	43.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	345.52	253.89	239.56	325.89	257.98	200.14	287.28	216.66	141.77
Merged-chr5-20951893-3	chr5	20951392	20952392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080977)	promoter-TSS (NM_001080977)	-70.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	197.93	209.2	220.14	191.62	162.34	168.8	190.11	184.83	126.78
Merged-chr12-46819518-3	chr12	46819015	46820015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-740.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	9.72	7.83	2.77	26.99	18.19	32.15	22.18	22.99	14.99
Merged-chr11-97150652-3	chr11	97150180	97151180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198100)	promoter-TSS (NM_198100)	-968.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	118.99	69.12	139.67	151.81	109.63	151.92	151.03	138.4	65.58
Merged-chr8-70634270-3	chr8	70633729	70634729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1773.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	197.93	110.13	56.42	101.21	55.98	24.92	105.62	90.64	43.72
Merged-chr7-135650234-3	chr7	135649714	135650714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015548, intron 2 of 2)	intron (NR_015548, intron 2 of 2)	-1685.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	21.74	40.09	18.5	26.31	15.86	28.94	10.56	17.24	19.36
Merged-chr7-141444073-3	chr7	141443558	141444558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360523)	promoter-TSS (NM_001360523)	-33.0	NR_153591	57913.0	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	32.04	29.03	52.72	27.66	32.19	52.25	32.74	43.77	31.85
Merged-chr3-108257087-3	chr3	108256611	108257611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011967, exon 1 of 9)	5' UTR (NM_011967, exon 1 of 9)	185.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	155.6	194.91	183.14	132.24	144.15	117.35	165.82	187.48	114.29
Merged-chr4-32565197-3	chr4	32564683	32565683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	intron (NM_001109661, intron 3 of 4)	6479.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	220.81	190.76	147.07	214.56	160.95	184.07	219.69	215.34	144.27
Merged-chr2-144270706-3	chr2	144270183	144271183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289630)	promoter-TSS (NM_001289630)	-111.0	NM_024225	69178.0	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	370.12	295.36	245.11	403.48	341.48	243.55	312.63	290.06	161.75
Merged-chr16-50588367-3	chr16	50587848	50588848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2155.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	14.3	14.75	5.55	25.64	18.66	11.25	11.62	16.8	7.49
Merged-chr3-95519085-3	chr3	95518582	95519582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-7704.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	89.81	99.53	73.07	70.85	66.24	90.02	64.43	108.77	84.94
Merged-chr6-120466747-3	chr6	120466234	120467234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	3537.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	72.65	64.97	42.55	80.97	63.45	101.28	65.48	66.77	69.32
Merged-chr4-133177055-1	chr4	133176555	133177555	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-18600.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	74.94	95.84	63.82	109.3	124.09	109.32	117.24	108.33	71.2
Merged-chr18-65802432-3	chr18	65801913	65802913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025468, intron 1 of 5)	intron (NM_025468, intron 1 of 5)	1835.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	118.99	133.17	62.9	81.64	96.57	84.4	134.14	119.83	41.22
Merged-chr2-117403916-3	chr2	117403417	117404417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61040.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	118.42	138.24	103.59	107.95	80.24	127.8	145.75	134.42	87.43
Merged-chr18-56753658-3	chr18	56753156	56754156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010721)	TTS (NM_010721)	45843.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	26.31	21.66	11.1	35.09	17.73	11.25	24.29	19.46	13.74
Merged-chr6-148212133-3	chr6	148211631	148212631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015615)	promoter-TSS (NR_015615)	-157.0	NR_015615	320737.0	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	321.49	366.78	221.06	277.31	372.74	191.3	297.84	337.82	151.14
Merged-chr8-109705489-3	chr8	109704999	109705999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-47.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	115.55	132.25	141.52	157.21	166.54	185.68	149.98	123.36	81.19
Merged-chr17-29432112-3	chr17	29431606	29432606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-58939.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	193.93	176.02	111.92	115.38	74.64	53.05	141.53	175.1	78.07
Merged-chr10-69212652-3	chr10	69212165	69213165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	8.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	280.88	327.62	256.21	272.59	268.71	227.47	289.39	292.71	220.46
Merged-chr5-67302094-3	chr5	67301582	67302582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4873.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	26.89	25.8	44.4	26.99	20.99	24.11	46.47	47.31	19.98
Merged-chr11-100378648-3	chr11	100378146	100379146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 7 of 13)	intron (NM_010593, intron 7 of 13)	19144.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	96.11	79.72	74.92	87.71	55.98	69.93	84.49	90.2	53.71
Merged-chr18-4302866-3	chr18	4302357	4303357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50096.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	133.29	131.78	84.17	139.67	124.09	58.68	146.81	129.55	60.58
Merged-chr2-113450111-3	chr2	113449603	113450603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	9039.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	168.76	170.49	107.29	193.64	187.07	163.17	104.56	151.66	94.93
Merged-chr2-132019411-3	chr2	132018873	132019873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	10615.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	68.65	64.97	63.82	75.57	64.38	78.77	74.99	94.18	91.18
Merged-chr13-9764037-3	chr13	9763526	9764526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347476)	promoter-TSS (NM_001347476)	-216.0	NM_001347476	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	262.57	236.84	272.86	270.56	200.6	166.38	321.08	240.98	139.89
Merged-chr13-3782722-3	chr13	3782208	3783208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21610.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	21.74	13.82	20.35	19.57	17.73	20.09	16.9	6.63	22.48
Merged-chr8-70001831-3	chr8	70001317	70002317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5433.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	318.63	329.92	221.99	284.73	259.85	265.25	259.82	392.64	162.38
Merged-chr9-108854093-3	chr9	108853614	108854614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134420)	promoter-TSS (NM_134420)	71.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	236.26	231.31	174.82	265.16	226.26	235.51	264.05	352.85	131.15
Merged-chr1-125470963-3	chr1	125470437	125471437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35210.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	94.39	74.65	85.1	87.71	48.05	91.63	121.46	101.26	81.19
Merged-chr3-144570329-3	chr3	144569835	144570835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	-92.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	196.79	185.24	152.62	202.42	152.08	113.33	189.06	191.02	99.92
Merged-chr12-16877043-3	chr12	16876543	16877543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17935.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	287.17	312.87	198.87	281.36	217.86	222.65	210.18	247.17	175.49
Merged-chr19-47090319-1	chr19	47089819	47090819	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	306.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	267.15	283.84	155.39	275.96	302.76	167.19	221.8	308.63	118.04
Merged-chr19-38021457-1	chr19	38020957	38021957	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	22120.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	21.17	26.73	15.72	24.96	25.19	32.96	38.02	25.2	21.86
Merged-chr15-38371868-3	chr15	38371371	38372371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71160.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	29.17	28.11	25.9	67.47	35.92	55.46	40.14	40.68	23.73
Merged-chr4-139175448-3	chr4	139174934	139175934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033543)	TTS (NR_033543)	5221.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	165.9	131.32	64.75	149.11	104.96	93.24	177.44	190.13	79.94
Merged-chr10-119240178-3	chr10	119239668	119240668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-113.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	215.09	182.47	146.14	173.4	159.55	149.5	178.5	149.89	114.29
Merged-chr11-106419640-3	chr11	106419139	106420139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 9 of 21)	intron (NM_023913, intron 9 of 21)	-36858.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	88.1	85.25	67.52	132.24	96.57	85.2	116.18	99.49	92.43
Merged-chr11-22860536-3	chr11	22860036	22861036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169114)	promoter-TSS (NM_001169114)	-200.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	77.8	78.79	63.82	82.32	77.44	96.45	62.31	86.22	38.72
Merged-chr9-122310890-3	chr9	122310385	122311385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-16462.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	51.48	69.12	35.15	83.66	96.1	50.64	79.21	80.47	36.85
Merged-chr1-10280380-3	chr1	10279880	10280880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47710.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	16.02	17.05	22.2	18.89	9.8	13.66	19.01	11.5	26.23
Merged-chr2-117989350-3	chr2	117988818	117989818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	121884.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	5.72	3.23	0.0	14.84	5.6	4.82	3.17	1.77	9.37
Merged-chr1-162622097-1	chr1	162621597	162622597	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17053.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	5.15	1.84	3.7	64.77	48.98	32.96	1.06	1.77	0.0
Merged-chr4-95052304-3	chr4	95051815	95052815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010591)	promoter-TSS (NM_010591)	-93.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	368.4	233.62	219.21	329.94	242.12	232.29	280.95	294.48	191.11
Merged-chr7-127290411-3	chr7	127289917	127290917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5843.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	67.5	70.96	68.45	53.98	30.32	61.09	62.31	66.77	49.96
Merged-chr2-75659102-3	chr2	75658599	75659599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198090)	promoter-TSS (NM_198090)	-160.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	528.01	541.88	279.34	434.52	555.61	289.36	385.51	510.26	199.22
Merged-chr17-5573227-3	chr17	5572751	5573751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	X7A_LINE|LINE|CR1	80651.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	229.97	234.54	151.69	244.25	249.58	196.12	251.37	345.33	96.8
Merged-chr1-74817036-3	chr1	74816540	74817540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25021.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	30.89	34.56	40.7	30.36	44.78	46.62	49.64	43.77	18.74
Merged-chr7-44952926-3	chr7	44952418	44953418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077591, intron 6 of 10)	intron (NM_001077591, intron 6 of 10)	9678.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	18.31	9.68	3.7	22.27	11.66	27.33	21.12	15.03	14.99
Merged-chr19-43520546-3	chr19	43520044	43521044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	4061.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	116.13	110.13	89.72	124.82	91.44	77.16	140.47	152.55	115.54
Merged-chr5-65199575-3	chr5	65199059	65200059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-137.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	73.22	99.07	33.3	112.0	102.63	95.65	96.11	87.55	43.09
Merged-chr19-3907071-3	chr19	3906574	3907574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	59.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	279.16	240.07	251.59	219.28	223.92	190.5	313.69	363.46	203.6
Merged-chr7-16263172-3	chr7	16262701	16263701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	50.34	28.57	16.65	27.66	17.26	24.11	24.29	15.92	11.24
Merged-chr11-30786736-3	chr11	30786234	30787234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	14959.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	68.65	68.2	60.12	64.1	49.45	62.7	94.0	89.32	46.22
Merged-chr2-124608861-3	chr2	124608369	124609369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-1427.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	137.29	128.1	66.6	112.68	92.84	99.67	88.72	128.67	74.32
Merged-chr3-95281844-3	chr3	95281327	95282327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173347, exon 1 of 8)	5' UTR (NM_173347, exon 1 of 8)	249.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	180.77	167.73	90.65	151.81	156.28	119.76	178.5	221.08	102.42
Merged-chr8-56071015-3	chr8	56070514	56071514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	RLTR28|LTR|ERVL	130189.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	19.45	10.14	3.7	22.94	7.93	12.86	8.45	22.11	13.12
Merged-chr10-81320761-3	chr10	81320241	81321241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-362.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	213.95	135.01	113.77	211.19	105.9	123.78	201.73	166.7	80.56
Merged-chr6-67036615-3	chr6	67036102	67037102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	3.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	74.94	74.19	74.0	76.92	64.38	53.85	43.3	43.33	28.73
Merged-chr9-45113184-2	chr9	45112684	45113684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033547, intron 1 of 2)	intron (NR_033547, intron 1 of 2)	-4692.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	26.89	23.96	13.87	34.41	23.33	40.19	5.28	1.77	2.5
Merged-chrX-96130314-3	chrX	96129840	96130840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	34295.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	136.72	130.4	90.65	120.1	81.64	61.89	102.45	130.0	83.69
Merged-chr9-72660334-3	chr9	72659834	72660834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1997.0	NM_010890	17999.0	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|EG639396|Gm7265|KIAA0093|Nedd4-1|Nedd4a	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	3.43	6.91	0.92	4.05	3.73	3.22	6.34	7.52	3.12
Merged-chr9-108306126-3	chr9	108305637	108306637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313961)	promoter-TSS (NM_001313961)	22.0	NM_133986	102791.0	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	272.87	243.29	249.74	230.75	204.33	184.07	207.01	186.59	138.02
Merged-chr1-92640599-3	chr1	92640109	92641109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	1339.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	84.66	73.73	95.27	83.66	64.38	60.28	110.9	88.88	51.84
Merged-chr13-49196828-5	chr13	49196278	49197278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013610)	TTS (NM_013610)	9231.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	170.47	156.67	143.37	219.96	143.22	186.48	189.06	175.1	114.91
Merged-chr1-191443764-1	chr1	191443264	191444264	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 3 of 5)	intron (NR_151615, intron 3 of 5)	21284.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	11.44	5.53	8.32	5.4	5.6	1.61	10.56	7.07	17.49
Merged-chr17-26508259-3	chr17	26507883	26508883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013642)	promoter-TSS (NM_013642)	89.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	384.99	229.93	253.44	410.23	264.51	225.06	303.13	267.07	111.17
Merged-chr8-70561966-1	chr8	70561466	70562466	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	22291.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	18.31	6.45	8.32	56.68	46.18	30.54	24.29	11.94	5.0
Merged-chr8-35387117-3	chr8	35386630	35387630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177741, exon 2 of 2)	3' UTR (NM_177741, exon 2 of 2)	11389.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	20.59	19.35	34.22	40.48	22.39	22.51	50.7	42.89	16.24
Merged-chr16-59601035-3	chr16	59600535	59601535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35910.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	56.06	62.21	79.55	93.79	57.85	87.61	103.51	70.3	81.81
Merged-chr3-103020468-3	chr3	103019962	103020962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144901)	promoter-TSS (NM_144901)	-84.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	608.09	604.55	414.38	516.83	537.42	425.2	463.67	587.2	309.77
Merged-chr4-101742200-3	chr4	101741717	101742717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	intron (NM_146146, intron 4 of 18)	24810.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	109.83	104.6	57.35	118.08	103.1	82.79	363.33	382.92	141.77
Merged-chr6-86779414-3	chr6	86778926	86779926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	L1M1|LINE|L1	-4312.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	143.01	127.64	61.05	120.77	100.3	64.3	73.93	65.44	9.99
Merged-chr4-45795315-3	chr4	45794824	45795824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3698.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	26.89	19.35	36.07	20.24	14.93	13.66	45.42	25.2	31.85
Merged-chr3-129949581-3	chr3	129949076	129950076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	MLT1A|LTR|ERVL-MaLR	20630.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	11.44	8.75	17.57	9.45	10.26	14.47	12.67	9.73	10.62
Merged-chr4-132509769-3	chr4	132509228	132510228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	728.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	105.26	72.34	76.77	84.34	83.04	91.63	101.39	106.12	66.2
Merged-chr19-53332163-3	chr19	53331671	53332671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008543, intron 2 of 5)	intron (NM_001008543, intron 2 of 5)	1763.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	126.42	130.4	120.24	109.3	106.83	94.04	110.9	158.3	84.94
Merged-chr3-27617069-3	chr3	27616617	27617617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	MER126|DNA|DNA	-32122.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	267.72	215.65	105.44	300.92	206.2	221.85	248.2	247.17	113.04
Merged-chr9-58537962-3	chr9	58537480	58538480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133983, intron 1 of 6)	intron (NM_133983, intron 1 of 6)	2960.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.58	11.52	10.17	8.1	3.27	4.02	6.34	3.54	3.12
Merged-chr4-130802233-3	chr4	130801723	130802723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	9686.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	335.8	269.1	203.49	401.46	236.99	255.6	393.96	348.43	169.25
Merged-chr1-106628439-3	chr1	106627927	106628927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	RCHARR1|DNA|hAT-Charlie	-81796.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	32.04	14.75	10.17	26.99	10.73	11.25	25.35	7.52	6.25
Merged-chr4-149617179-3	chr4	149616679	149617679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290989, intron 2 of 17)	ID_B1|SINE|B4	30711.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	94.96	93.08	64.75	90.41	100.3	82.79	135.19	146.36	54.33
Merged-chr5-92486937-3	chr5	92486425	92487425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	Lx8|LINE|L1	18732.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	139.58	141.46	83.25	136.29	110.1	94.85	130.97	110.98	66.2
Merged-chr11-95514684-3	chr11	95514209	95515209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130858)	promoter-TSS (NM_130858)	-144.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	4.0	2.76	0.0	2.02	1.87	0.0	1.06	1.77	2.5
Merged-chr11-89003394-3	chr11	89002881	89003881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	3978.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	120.13	140.08	97.12	132.24	127.36	104.49	145.75	142.82	62.45
Merged-chr9-118646028-3	chr9	118645518	118646518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	39309.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	98.39	93.54	98.97	118.75	99.83	139.86	77.1	107.89	66.82
Merged-chr15-99000790-1	chr15	99000290	99001290	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14825.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	3.43	1.38	3.7	14.17	14.46	19.29	28.52	22.99	13.12
Merged-chr16-91527254-3	chr16	91526739	91527739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105786)	TTS (NR_105786)	305.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	40.62	35.02	41.62	29.69	17.73	51.44	45.42	25.2	39.97
Merged-chr9-55257294-3	chr9	55256799	55257799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	26326.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	28.6	23.04	22.2	63.42	45.72	61.09	40.14	29.18	28.1
Merged-chr11-43426243-3	chr11	43425759	43426759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013917)	promoter-TSS (NM_013917)	-11.0	NM_001131054	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	69.79	87.55	44.4	66.8	62.98	69.93	111.96	129.11	81.81
Merged-chr9-45181924-3	chr9	45181421	45182421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145403, intron 5 of 12)	intron (NM_145403, intron 5 of 12)	-13845.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	110.98	131.32	97.12	83.66	73.71	102.88	124.63	116.29	93.05
Merged-chr3-89279681-3	chr3	89279174	89280174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-29.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	40.62	21.2	25.9	46.56	29.86	30.54	36.97	18.13	14.99
Merged-chr6-33249042-3	chr6	33248551	33249551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009148)	promoter-TSS (NM_009148)	-77.0	NM_009148	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	31.46	35.02	15.72	46.56	38.25	40.19	61.26	48.2	10.62
Merged-chr1-95323183-3	chr1	95322672	95323672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	9544.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	94.39	106.9	22.2	113.35	111.03	57.87	91.89	87.11	43.72
Merged-chr7-16100668-3	chr7	16100161	16101161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	2081.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	76.66	49.76	55.5	66.12	43.85	55.46	53.87	49.52	53.71
Merged-chr15-66833530-3	chr15	66833015	66834015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 43 of 47)	intron (NM_009375, intron 43 of 47)	-1686.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	41.19	35.94	50.87	55.33	34.06	54.66	46.47	54.39	19.98
Merged-chr14-33202340-3	chr14	33201856	33202856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14467.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	77.8	75.11	37.0	101.88	74.17	84.4	53.87	45.54	47.46
Merged-chr4-55531451-4	chr4	55530937	55531937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010637, intron 2 of 4)	CpG	1038.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	72.08	80.64	35.15	66.12	53.18	51.44	60.2	39.35	40.59
Merged-chr1-170934595-3	chr1	170934094	170935094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7011.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	86.38	72.34	44.4	107.95	89.57	94.85	50.7	86.22	45.59
Merged-chr3-36475133-3	chr3	36474626	36475626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028183)	promoter-TSS (NM_028183)	398.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	207.66	247.44	172.04	224.01	210.4	205.77	208.07	252.92	159.88
Merged-chr3-102995743-3	chr3	102995247	102996247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025679)	promoter-TSS (NM_025679)	7.0	NM_025679	66641.0	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	108.12	139.16	100.82	113.35	124.56	127.0	130.97	83.57	67.45
Merged-chr14-21076040-3	chr14	21075526	21076526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243041)	promoter-TSS (NM_001243041)	-126.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	54.92	47.0	30.52	77.59	60.18	46.62	49.64	67.21	24.36
Merged-chr12-52308759-3	chr12	52308257	52309257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	171852.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	114.41	75.57	48.1	89.74	81.64	32.15	114.07	120.27	40.59
Merged-chr7-44869926-3	chr7	44869447	44870447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-159.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	109.83	79.25	80.47	105.26	45.25	80.38	86.61	50.85	68.7
Merged-chr15-94591558-3	chr15	94591055	94592055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1731.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	106.97	171.41	117.47	98.51	128.76	132.63	135.19	175.98	119.28
Merged-chr9-44579581-3	chr9	44579081	44580081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25311.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	74.94	59.44	62.9	84.34	48.52	61.89	96.11	122.92	83.69
Merged-chr12-102296605-3	chr12	102296105	102297105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12964.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	58.92	47.92	26.82	72.19	65.31	56.27	45.42	32.72	17.49
Merged-chr1-45907561-1	chr1	45907061	45908061	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_016917)	TTS (NM_016917)	18033.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	30.89	37.78	43.47	37.11	38.25	42.6	43.3	35.82	30.6
Merged-chr3-41943253-1	chr3	41942753	41943753	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	200635.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	2.29	3.69	1.85	4.05	5.6	4.82	0.0	0.44	5.0
Merged-chr7-41599239-3	chr7	41598755	41599755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34276.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	25.17	35.02	16.65	26.99	35.45	38.58	46.47	34.93	22.48
Merged-chr5-81058355-3	chr5	81057859	81058859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	36766.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.86	5.53	7.4	4.05	4.2	0.0	5.28	3.1	1.25
Merged-chr10-127642578-2	chr10	127642073	127643073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-413.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	456.5	272.32	260.84	403.48	234.65	246.76	346.43	434.21	209.22
Merged-chr2-4917564-3	chr2	4917078	4918078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1418.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	94.39	91.24	80.47	75.57	85.84	138.25	105.62	137.51	67.45
Merged-chr1-164275641-3	chr1	164275134	164276134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029115)	promoter-TSS (NM_029115)	36.0	NM_029115	74895.0	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	10.87	10.6	18.5	8.77	7.0	19.29	10.56	10.61	3.75
Merged-chr17-6794609-3	chr17	6794094	6795094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11814.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	80.66	64.51	18.5	70.17	37.32	36.97	64.43	62.79	33.1
Merged-chr9-46012715-3	chr9	46012202	46013202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027498)	promoter-TSS (NM_027498)	-12.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	244.84	186.16	114.69	222.66	182.87	111.73	142.59	94.18	69.95
Merged-chr9-20898623-3	chr9	20898125	20899125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016876)	promoter-TSS (NM_016876)	-35.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	93.82	47.46	96.2	70.85	55.98	86.01	117.24	72.52	66.2
Merged-chr11-118459301-3	chr11	118458787	118459787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER73|LTR|ERVL	-4292.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	216.81	100.45	120.24	261.79	93.77	147.9	257.71	192.34	131.78
Merged-chrX-74393227-3	chrX	74392730	74393730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161423)	promoter-TSS (NM_001161423)	44.0	NM_025473	66294.0	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	75.51	94.92	47.17	65.45	76.51	55.46	51.75	84.01	43.09
Merged-chr1-119913200-3	chr1	119912707	119913707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175106)	promoter-TSS (NM_175106)	-39.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	19.45	28.11	20.35	18.22	15.86	14.47	17.96	19.9	14.36
Merged-chr14-54864182-3	chr14	54863662	54864662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177705)	promoter-TSS (NM_001177705)	-4.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	171.62	117.04	98.05	164.63	126.42	141.47	105.62	96.83	54.96
Merged-chr16-85173742-3	chr16	85173259	85174259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198824)	promoter-TSS (NM_001198824)	-52.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	103.54	68.2	98.97	108.63	97.97	109.32	105.62	78.26	54.33
Merged-chr4-132303330-3	chr4	132302845	132303845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	11.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	62.35	36.86	34.22	56.0	42.92	61.09	66.54	44.22	29.98
Merged-chr7-25683715-3	chr7	25683233	25684233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172148, intron 2 of 2)	intron (NM_172148, intron 2 of 2)	2575.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	78.37	65.43	77.7	63.42	42.45	101.28	77.1	99.93	76.82
Merged-chr10-94514874-3	chr10	94514372	94515372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172051)	promoter-TSS (NM_172051)	15.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	116.7	98.15	100.82	136.97	96.1	96.45	90.83	76.94	46.22
Merged-chr18-39145369-2	chr18	39144866	39145866	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	152221.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.15	10.6	3.7	12.14	5.6	14.47	4.22	3.98	3.75
Merged-chr1-64876449-3	chr1	64875937	64876937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	80387.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	66.36	104.14	67.52	79.62	103.1	84.4	94.0	89.32	43.09
Merged-chr14-19985280-3	chr14	19984743	19985743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7994.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	129.86	161.74	112.84	136.29	118.49	114.94	107.73	102.58	84.94
Merged-chr7-127512966-3	chr7	127512469	127513469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024331)	promoter-TSS (NR_024331)	-100.0	NR_024331	629159.0	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	215.09	164.5	160.02	201.74	117.56	193.71	249.26	221.97	157.38
Merged-chr17-46640076-3	chr17	46639561	46640561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029091, exon 6 of 17)	exon (NM_029091, exon 6 of 17)	6019.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	62.93	41.93	52.72	56.68	45.25	67.52	65.48	55.27	33.72
Merged-chr4-5644112-3	chr4	5643621	5644621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173426)	promoter-TSS (NM_173426)	31.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	13.73	11.06	14.8	26.31	16.79	26.53	11.62	6.19	17.49
Merged-chr4-3723014-3	chr4	3722506	3723506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	8042.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	86.95	95.84	61.05	109.3	66.24	67.52	89.78	98.6	63.7
Merged-chr2-27765088-3	chr2	27764608	27765608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54525.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	60.64	57.14	24.97	60.72	35.92	25.72	33.8	30.95	34.97
Merged-chr19-44315200-1	chr19	44314700	44315700	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12029.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	191.64	164.96	142.44	205.79	197.8	193.71	291.51	385.13	108.04
Merged-chr5-17839767-3	chr5	17839250	17840250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-3854.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	85.24	82.94	27.75	90.41	96.57	30.54	78.16	84.01	40.59
Merged-chr10-83637546-3	chr10	83637018	83638018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	11146.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	89.24	101.37	52.72	103.23	86.77	85.2	98.23	88.43	53.71
Merged-chr7-55842232-3	chr7	55841732	55842732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164661, exon 1 of 32)	5' UTR (NM_001164661, exon 1 of 32)	161.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	118.99	107.82	168.34	105.93	100.3	163.17	137.3	109.66	116.16
Merged-chr11-118981160-3	chr11	118980589	118981589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7092.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	22.88	18.89	11.1	41.83	18.19	18.49	15.84	18.13	8.74
Merged-chr11-101587889-3	chr11	101587395	101588395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359325, intron 4 of 7)	RMER19B|LTR|ERVK	5596.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	48.05	35.02	40.7	65.45	50.85	60.28	82.38	39.35	32.48
Merged-chr16-91865180-3	chr16	91864638	91865638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	66492.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	54.92	67.74	66.6	84.34	73.24	121.37	97.17	114.96	56.83
Merged-chr1-106581989-3	chr1	106581506	106582506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-35375.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	21.17	6.45	9.25	17.54	11.2	7.23	14.79	18.13	4.37
Merged-chr17-87106892-3	chr17	87106393	87107393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-786.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	224.82	194.45	175.74	201.07	177.27	188.89	212.29	225.95	127.4
Merged-chr18-36472487-3	chr18	36471972	36472972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17977.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	233.97	188.46	122.09	273.94	174.47	118.16	189.06	193.23	62.45
Merged-chr7-80774395-3	chr7	80773890	80774890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28941.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	250.56	247.9	156.32	290.8	281.3	159.15	213.35	288.74	139.89
Merged-chr4-139615426-1	chr4	139614926	139615926	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 8 of 8)	MTD|LTR|ERVL-MaLR	-7468.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	67.5	54.37	46.25	22.94	10.26	24.11	47.53	47.75	41.22
Merged-chr17-29264120-3	chr17	29263597	29264597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026845)	promoter-TSS (NM_026845)	-126.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	62.93	62.67	128.57	49.93	59.25	123.78	91.89	60.58	85.56
Merged-chr7-113378103-3	chr7	113377611	113378611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-8772.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	9.15	10.14	1.85	8.1	7.46	6.43	7.39	4.42	6.87
Merged-chr17-35425631-1	chr17	35425131	35426131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023124, exon 3 of 5)	exon (NM_023124, exon 3 of 5)	754.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	28.03	28.11	12.02	24.29	20.06	8.04	45.42	29.18	13.12
Merged-chr17-27556510-3	chr17	27556014	27557014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166536)	promoter-TSS (NM_001166536)	-60.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	387.28	343.74	252.51	338.03	322.36	293.38	267.21	292.71	191.73
Merged-chr5-7955769-3	chr5	7955281	7956281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4691.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	17.73	13.82	8.32	17.54	16.79	17.68	22.18	18.57	35.6
Merged-chr1-37486622-3	chr1	37486110	37487110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1995.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	125.85	125.33	84.17	142.37	106.36	125.39	140.47	168.91	98.05
Merged-chr5-72219814-3	chr5	72219313	72220313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	16470.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	102.97	91.24	49.95	95.81	52.72	53.85	106.67	93.3	59.95
Merged-chr16-55776513-3	chr16	55776012	55777012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45626.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	14.87	10.14	7.4	20.24	5.13	0.0	14.79	11.94	12.49
Merged-chr8-70510472-3	chr8	70509968	70510968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348229)	promoter-TSS (NM_001348229)	-18.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	517.14	370.93	358.88	371.09	299.03	279.72	390.79	379.38	279.16
Merged-chr11-100397903-3	chr11	100397408	100398408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132425)	promoter-TSS (NR_132425)	-118.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	116.7	82.02	62.9	106.61	64.38	76.36	70.76	86.66	47.46
Merged-chr2-128437275-1	chr2	128436775	128437775	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-7924.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	9.15	6.45	7.4	39.81	25.19	27.33	12.67	10.17	5.0
Merged-chr12-112618140-3	chr12	112617641	112618641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	121.28	105.52	56.42	188.92	132.95	150.31	172.16	174.21	50.59
Merged-chr15-76080943-3	chr15	76080444	76081444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133691)	promoter-TSS (NM_133691)	2.0	NM_133691	67959.0	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	251.13	245.14	207.19	222.66	224.86	189.69	213.35	222.85	128.03
Merged-chr2-155100870-3	chr2	155100389	155101389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040634)	promoter-TSS (NR_040634)	-810.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	93.24	80.64	98.05	52.63	16.33	58.68	113.01	130.88	61.2
Merged-chr6-47813518-3	chr6	47813023	47814023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	-11.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	78.94	83.86	46.25	86.36	83.97	80.38	59.15	86.22	27.48
Merged-chr13-21169848-3	chr13	21169340	21170340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10091.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	41.76	72.34	42.55	43.18	31.72	20.09	41.19	51.29	38.72
Merged-chr15-55196583-3	chr15	55196088	55197088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	intron (NM_001037937, intron 4 of 8)	63152.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	17.73	22.12	11.1	21.59	18.66	32.15	7.39	11.94	19.98
Merged-chr18-46516031-5	chr18	46515545	46516545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173423, intron 2 of 2)	L1MB8|LINE|L1	9926.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	129.86	148.37	62.9	141.02	98.9	70.73	166.88	181.29	63.7
Merged-chr15-57694534-3	chr15	57693992	57694992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-175.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	329.5	452.95	238.64	433.17	555.15	307.85	298.9	340.47	148.01
Merged-chr2-5793977-3	chr2	5793476	5794476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356501)	TTS (NM_001356501)	-51058.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	33.18	21.66	12.02	84.34	58.31	57.87	34.85	49.52	17.49
Merged-chr16-23375092-3	chr16	23374580	23375580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-54053.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	100.11	101.83	86.95	120.1	91.44	88.42	117.24	128.67	63.08
Merged-chr2-98666490-5	chr2	98665969	98666969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1198812.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	3387.13	15057.51	2859.96	4253.42	13882.82	3110.66	8973.35	7867.48	3275.65
Merged-chr3-122274287-3	chr3	122273794	122274794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153806)	promoter-TSS (NM_153806)	-120.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	132.72	151.6	122.09	134.27	170.74	142.27	135.19	133.53	85.56
Merged-chr18-4803447-3	chr18	4802905	4803905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9081.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	50.91	34.56	42.55	74.89	59.25	65.91	20.07	26.97	26.23
Merged-chr11-3913928-3	chr11	3913434	3914434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	730.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	36.04	35.02	28.67	45.21	40.12	62.7	29.57	17.69	27.48
Merged-chr1-173767035-3	chr1	173766534	173767534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008329)	promoter-TSS (NM_008329)	-115.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	68.07	81.1	15.72	93.79	90.04	28.94	143.64	160.51	77.44
Merged-chr1-161070782-3	chr1	161070286	161071286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131028)	promoter-TSS (NR_131028)	19.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	100.11	135.47	86.02	82.32	88.17	113.33	137.3	145.47	102.42
Merged-chr8-95852495-3	chr8	95851986	95852986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172758, intron 2 of 11)	intron (NM_172758, intron 2 of 11)	1005.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	96.68	116.58	75.85	100.53	120.83	130.21	101.39	109.66	63.7
Merged-chr11-3135738-2	chr11	3135243	3136243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 26 of 33)	exon (NM_030207, exon 26 of 33)	11722.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	24.6	20.74	73.07	37.11	34.06	83.59	0.0	2.21	108.67
Merged-chr5-148399375-3	chr5	148398864	148399864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 1 of 12)	CpG	540.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	106.4	74.65	42.55	62.75	53.65	23.31	69.71	68.54	20.61
Merged-chr1-134962535-3	chr1	134962030	134963030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-35.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	54.35	30.41	27.75	72.87	76.51	31.35	78.16	84.45	23.11
Merged-chr19-5637822-1	chr19	5637322	5638322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_009045, exon 1 of 11)	5' UTR (NM_009045, exon 1 of 11)	332.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	664.73	431.75	369.06	582.28	392.33	308.65	441.49	318.36	223.58
Merged-chr1-36244276-3	chr1	36243773	36244773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198899)	promoter-TSS (NM_198899)	29.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	184.77	156.67	98.97	135.62	132.95	135.04	145.75	110.54	63.7
Merged-chr8-115427583-3	chr8	115427083	115428083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	279311.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	58.92	43.77	26.82	67.47	41.05	58.68	58.09	57.92	34.35
Merged-chr16-44118225-3	chr16	44117747	44118747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	B1F|SINE|Alu	21012.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	93.24	82.94	55.5	99.18	87.24	78.77	77.1	93.74	61.2
Merged-chr10-67004274-3	chr10	67003785	67004785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-790.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	237.97	180.63	65.67	257.07	215.53	138.25	217.57	244.08	74.94
Merged-chr17-34025176-1	chr17	34024676	34025676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-84.0	NR_029800	723823.0		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	256.28	188.92	121.17	255.72	168.88	143.07	192.23	175.1	87.43
Merged-chr10-10462611-1	chr10	10462111	10463111	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	9703.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.86	6.45	3.7	5.4	3.73	6.43	50.7	44.22	24.98
Merged-chr17-29489736-3	chr17	29489218	29490218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1327.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	565.19	569.53	337.61	528.98	441.78	307.05	438.32	602.23	246.69
Merged-chr16-17694923-3	chr16	17694428	17695428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	27972.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	117.27	100.91	32.37	126.85	113.83	70.73	158.43	134.42	33.1
Merged-chr17-47757283-3	chr17	47756791	47757791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	19360.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	187.06	123.49	53.65	201.74	177.27	100.47	220.74	178.64	46.84
Merged-chr8-126595635-3	chr8	126595138	126596138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2202.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	263.14	277.39	147.99	286.08	265.91	237.12	257.71	332.51	170.5
Merged-chr5-143518368-3	chr5	143517875	143518875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	9618.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	60.64	66.81	44.4	81.64	50.85	35.37	70.76	29.63	41.84
Merged-chr17-34000349-3	chr17	33999849	34000849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-2.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	399.87	291.68	169.27	354.23	257.05	202.55	363.33	410.77	190.48
Merged-chr8-126971107-3	chr8	126970603	126971603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-24.0	NM_172762	52202.0	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	48.62	31.33	33.3	56.0	35.45	37.78	52.81	40.68	34.97
Merged-chr11-101465157-3	chr11	101464659	101465659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1040.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	158.46	106.44	61.97	215.23	191.27	149.5	125.69	112.75	31.23
Merged-chr17-72836460-3	chr17	72835972	72836972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-156.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	318.63	389.82	275.64	298.23	361.54	286.15	311.57	380.26	187.36
Merged-chr2-11188451-3	chr2	11187944	11188944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	16062.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	42.33	40.09	53.65	42.51	26.59	32.15	68.65	67.21	37.47
Merged-chr7-97356941-3	chr7	97356443	97357443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14674.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	154.45	176.02	95.27	177.45	131.56	138.25	166.88	175.98	91.18
Merged-chr19-57360924-3	chr19	57360404	57361404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	-5.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	184.77	155.28	134.12	151.81	120.83	195.32	192.23	130.88	91.81
Merged-chr11-86544875-3	chr11	86544370	86545370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199047)	promoter-TSS (NM_001199047)	-63.0	NM_001114334	72508.0	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|P70S6K1|S6K|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	203.65	163.12	110.07	167.33	95.63	93.24	163.71	148.13	121.16
Merged-chr16-33782123-3	chr16	33781613	33782613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11924.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	4.58	5.99	3.7	6.07	3.73	6.43	20.07	12.38	6.25
Merged-chr2-20969604-3	chr2	20969058	20970058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033225, exon 2 of 2)	non-coding (NR_033225, exon 2 of 2)	684.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	118.99	145.15	95.27	136.29	154.88	112.53	125.69	124.69	79.94
Merged-chr8-123212867-3	chr8	123212368	123213368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	10.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	107.55	118.88	94.35	147.09	118.96	127.8	177.44	174.21	58.71
Merged-chr13-52059934-3	chr13	52059437	52060437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-36804.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	90.96	95.38	47.17	153.16	125.49	154.33	107.73	137.51	72.45
Merged-chr15-38468449-3	chr15	38467943	38468943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22104.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	87.52	61.75	64.75	57.35	49.45	81.99	47.53	57.92	44.34
Merged-chr11-53324658-3	chr11	53324156	53325156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026479)	promoter-TSS (NM_026479)	-33.0	NM_026479	67966.0	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	38.33	29.49	45.32	35.09	32.66	52.25	48.58	44.66	23.73
Merged-chr1-165194477-3	chr1	165193959	165194959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145512)	promoter-TSS (NM_145512)	-21.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	70.36	83.86	74.0	82.99	66.24	53.05	109.84	111.43	40.59
Merged-chr2-113397893-3	chr2	113397400	113398400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-43164.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	156.17	158.05	82.32	190.95	171.21	99.67	111.96	111.43	53.71
Merged-chr3-9027517-3	chr3	9027031	9028031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22808.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	92.67	76.03	91.57	156.53	71.84	94.04	138.36	118.5	59.95
Merged-chr16-14163228-3	chr16	14162736	14163736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023317)	promoter-TSS (NM_023317)	-39.0	NM_023317	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	62.93	85.71	66.6	42.51	48.98	66.71	82.38	87.55	79.94
Merged-chr2-129633497-3	chr2	129632982	129633982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	38020.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	129.86	103.22	51.8	122.12	76.04	79.58	66.54	72.07	67.45
Merged-chr19-33120551-1	chr19	33120051	33121051	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36561.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	24.6	23.96	12.95	31.71	30.79	31.35	33.8	25.65	25.61
Merged-chr14-25614907-3	chr14	25614411	25615411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	11398.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	55.49	33.64	3.7	54.65	30.32	32.15	21.12	12.38	16.24
Merged-chr3-94837418-3	chr3	94836912	94837912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172683)	promoter-TSS (NM_172683)	-155.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	160.75	159.89	157.24	148.44	120.36	135.04	163.71	151.66	123.03
Merged-chr5-130256978-3	chr5	130256493	130257493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001015876)	promoter-TSS (NM_001015876)	-44.0	NR_153350	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	41.76	59.9	50.87	34.41	44.78	47.42	67.6	59.69	48.09
Merged-chr2-167689782-3	chr2	167689280	167690280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	865.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	314.63	213.8	212.74	353.55	188.0	238.73	221.8	147.24	129.28
Merged-chr7-45529699-3	chr7	45529187	45530187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 1 of 19)	GA-rich|Low_complexity|Low_complexity	3357.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	11.44	9.22	10.17	14.17	6.06	16.08	6.34	4.86	3.75
Merged-chr2-118562605-3	chr2	118562105	118563105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12919.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	85.81	74.19	86.95	74.22	54.58	73.14	110.9	148.57	75.57
Merged-chr10-43034953-3	chr10	43034447	43035447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-43785.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	40.62	45.16	24.05	56.68	48.98	45.82	64.43	59.25	31.85
Merged-chr10-116581506-9	chr10	116581036	116582036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028082)	promoter-TSS (NM_028082)	-25.0	NM_001359249	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	306.05	228.55	232.16	231.43	174.94	224.26	302.07	209.59	194.85
Merged-chr2-26917053-2	chr2	26916545	26917545	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013677)	promoter-TSS (NM_013677)	-515.0	NM_013677	20930.0	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	123.56	98.15	116.54	141.02	110.1	122.18	111.96	135.75	83.06
Merged-chr14-23839844-1	chr14	23839344	23840344	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	164361.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	4.58	5.53	5.55	8.1	2.33	6.43	3.17	1.77	5.0
Merged-chr8-104339414-3	chr8	104338937	104339937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1157.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	96.68	70.04	107.29	92.44	47.58	110.12	96.11	61.9	84.94
Merged-chr12-55389878-3	chr12	55389373	55390373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	5651.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	35.47	31.33	11.1	33.06	22.86	36.17	35.91	25.65	51.21
Merged-chr4-155869501-3	chr4	155868968	155869968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	-28.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	40.62	33.64	39.77	46.56	39.19	52.25	40.14	34.93	29.35
Merged-chr10-69211812-3	chr10	69211319	69212319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081347)	promoter-TSS (NM_001081347)	-838.0	NM_001081347	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	122.42	118.42	96.2	108.63	94.7	99.67	111.96	110.98	90.56
Merged-chr2-73029929-3	chr2	73029434	73030434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-49488.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	28.03	17.97	3.7	47.9	15.86	32.15	36.97	26.97	16.24
Merged-chr14-78536956-3	chr14	78536478	78537478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164503)	promoter-TSS (NM_001164503)	-118.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	99.54	84.78	61.05	88.39	68.58	61.89	78.16	49.08	48.71
Merged-chr16-94609391-3	chr16	94608895	94609895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-2024.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	176.19	129.94	78.62	135.62	114.76	86.81	156.32	157.41	69.32
Merged-chr2-57181915-3	chr2	57181427	57182427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	96.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	44.62	49.76	31.45	60.72	55.98	27.33	43.3	57.04	23.73
Merged-chr7-45643731-3	chr7	45643243	45644243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172418, intron 7 of 9)	intron (NM_172418, intron 7 of 9)	3766.0	NM_172418	74490.0	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	5.72	3.23	1.85	5.4	5.13	11.25	6.34	3.98	5.0
Merged-chr16-16896511-3	chr16	16896012	16897012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	43.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	20.59	22.12	16.65	21.59	17.73	23.31	23.24	16.8	9.99
Merged-chr7-34234165-3	chr7	34233642	34234642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3806.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	97.25	134.55	85.1	126.17	145.08	127.8	104.56	124.25	61.2
Merged-chr2-71390110-3	chr2	71389605	71390605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026115, intron 2 of 10)	intron (NM_026115, intron 2 of 10)	845.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	159.03	192.15	104.52	224.01	242.58	196.93	239.75	318.36	159.88
Merged-chr8-39651932-3	chr8	39651446	39652446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-9268.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	70.36	84.32	67.52	69.5	56.91	47.42	41.19	41.12	35.6
Merged-chr19-18630632-3	chr19	18630122	18631122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	1191.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	200.79	254.81	137.82	159.91	163.74	126.19	100.34	164.93	100.55
Merged-chr12-79018108-3	chr12	79017607	79018607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10830.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	52.63	52.99	50.87	132.24	86.3	134.23	60.2	76.94	51.84
Merged-chr18-6773464-3	chr18	6772972	6773972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	8305.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	9.15	8.29	10.17	9.45	2.8	12.86	17.96	15.48	10.62
Merged-chr10-13988384-3	chr10	13987847	13988847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21968.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	265.43	236.84	149.84	259.09	291.1	217.83	262.99	298.46	123.03
Merged-chr13-51651747-3	chr13	51651253	51652253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	45.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	230.54	216.11	188.69	171.38	181.01	184.07	218.63	190.57	137.4
Merged-chr9-72274905-3	chr9	72274400	72275400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311105)	promoter-TSS (NM_001311105)	12.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	48.05	49.3	32.37	53.98	29.39	37.78	88.72	36.7	33.1
Merged-chr6-87533213-3	chr6	87532702	87533702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	57.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	220.24	177.4	164.64	212.54	164.21	163.97	237.64	278.57	154.88
Merged-chr16-50732738-3	chr16	50732250	50733250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028300)	promoter-TSS (NR_028300)	23.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	58.92	62.21	46.25	69.5	65.78	64.3	47.53	61.9	33.72
Merged-chr10-63243752-3	chr10	63243245	63244245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-52.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	175.05	182.93	172.04	149.11	179.61	184.87	188.0	214.45	144.27
Merged-chr15-31530248-3	chr15	31529740	31530740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	797.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	177.91	142.84	99.89	153.84	97.5	95.65	164.76	104.79	83.06
Merged-chr8-10901128-3	chr8	10900612	10901612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102285, intron 2 of 2)	intron (NR_102285, intron 2 of 2)	1190.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	70.93	86.17	62.9	85.69	61.11	62.7	63.37	60.58	42.47
Merged-chr11-49994639-3	chr11	49994128	49995128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30703.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	10.3	5.53	2.77	13.49	7.93	4.82	14.79	2.65	8.74
Merged-chr4-135873945-3	chr4	135873437	135874437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-91.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	411.88	363.56	247.89	524.93	411.46	290.97	369.66	459.41	221.71
Merged-chr12-110695933-2	chr12	110695452	110696452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010480, intron 1 of 10)	CpG	443.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	310.05	219.79	217.36	356.25	276.17	192.91	215.46	211.36	168.62
Merged-chr16-16983902-2	chr16	16983419	16984419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	CpG	537.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	197.36	203.67	145.22	191.62	189.4	140.66	183.78	108.77	104.3
Merged-chr15-73185351-3	chr15	73184809	73185809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153178)	promoter-TSS (NM_153178)	-362.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	198.5	137.31	123.02	232.1	127.36	117.35	195.39	109.22	94.93
Merged-chr10-33951298-3	chr10	33950848	33951848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153113)	promoter-TSS (NR_153113)	-89.0	NR_153113	72580.0	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	223.1	226.25	201.64	190.27	190.8	170.4	180.61	204.28	141.77
Merged-chr2-109917584-3	chr2	109917075	109918075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172671)	promoter-TSS (NM_172671)	-72.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	22.31	21.2	15.72	28.34	13.06	16.08	27.46	11.5	11.24
Merged-chr14-32085540-4	chr14	32084981	32085981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104305)	promoter-TSS (NR_104305)	-195.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	343.23	348.35	279.34	299.57	320.49	222.65	366.5	370.98	136.77
Merged-chr16-34304081-1	chr16	34303581	34304581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177357, intron 9 of 59)	intron (NM_177357, intron 9 of 59)	209946.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	2.29	2.3	7.4	5.4	1.4	4.82	3.17	5.75	3.75
Merged-chr4-133631182-3	chr4	133630678	133631678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	2251.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	72.65	67.27	69.37	104.58	106.83	96.45	66.54	84.9	52.46
Merged-chr9-25485701-3	chr9	25485197	25486197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	4100.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	73.22	43.31	20.35	48.58	39.65	32.96	61.26	45.1	20.61
Merged-chr8-25754416-3	chr8	25753905	25754905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028102)	promoter-TSS (NM_028102)	8.0	NM_001361595	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	37.18	29.03	23.12	95.81	70.91	61.09	60.2	27.86	17.49
Merged-chr4-132488751-2	chr4	132488262	132489262	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21694.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	21.74	28.57	8.32	63.42	42.45	59.48	43.3	36.26	33.1
Merged-chr3-98013444-3	chr3	98012921	98013921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-117.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	198.5	165.42	188.69	216.58	153.95	147.9	175.33	152.55	136.15
Merged-chr3-7366462-1	chr3	7365962	7366962	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-142.0	NM_008862	18767.0	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	1.72	0.46	0.92	10.8	13.53	11.25	0.0	0.44	2.5
Merged-chr6-134425650-3	chr6	134425145	134426145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	11217.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	41.19	47.46	35.15	57.35	36.85	61.09	34.85	41.12	31.23
Merged-chr4-32353039-3	chr4	32352534	32353534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64401.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	49.2	49.3	18.5	88.39	72.78	53.85	14.79	6.63	6.25
Merged-chr5-115119280-3	chr5	115118752	115119752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007383)	promoter-TSS (NM_007383)	94.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	35.47	28.57	40.7	39.81	31.26	42.6	25.35	21.67	13.74
Merged-chr2-59612001-3	chr2	59611520	59612520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198294)	promoter-TSS (NM_198294)	-22.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	30.89	29.95	14.8	58.03	40.12	28.13	49.64	31.39	18.11
Merged-chr5-137502557-3	chr5	137502051	137503051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-122.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	126.42	76.03	89.72	112.0	66.71	130.21	110.9	96.39	58.08
Merged-chr12-76527768-3	chr12	76527280	76528280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5432.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	115.55	93.54	58.27	82.32	71.38	76.36	86.61	94.18	61.2
Merged-chr1-183320937-3	chr1	183320442	183321442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181732, intron 8 of 9)	intron (NM_181732, intron 8 of 9)	-23649.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	32.04	31.33	28.67	35.09	46.18	41.8	29.57	38.03	21.23
Merged-chr16-4839818-3	chr16	4839313	4840313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	MIRb|SINE|MIR	4397.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	78.37	77.87	59.2	103.23	105.43	113.33	132.02	123.81	56.83
Merged-chr4-129058082-3	chr4	129057585	129058585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029219)	promoter-TSS (NM_029219)	-186.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	144.16	78.79	73.07	172.73	54.58	84.4	157.37	75.61	44.97
Merged-chr2-16491536-3	chr2	16491025	16492025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	135221.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	27.46	26.26	16.65	25.64	24.26	20.9	14.79	15.92	24.98
Merged-chr18-10609637-2	chr18	10609135	10610135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081222, intron 1 of 10)	CpG	717.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	220.81	230.85	164.64	231.43	259.85	223.45	232.36	180.4	120.53
Merged-chrX-142683563-3	chrX	142683078	142684078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	1852.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	72.65	66.81	28.67	77.59	57.38	53.05	67.6	57.92	34.97
Merged-chr1-65113002-3	chr1	65112514	65113514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-9651.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	262.0	284.76	171.12	389.31	394.67	300.62	428.81	586.31	199.22
Merged-chr16-94526593-3	chr16	94526079	94527079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	50.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	325.5	298.59	256.21	336.68	299.5	254.0	333.75	302.88	165.5
Merged-chr15-81859567-1	chr15	81859067	81860067	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-1241.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	372.98	346.05	239.56	352.2	318.16	304.64	364.38	450.13	234.82
Merged-chr5-30961060-1	chr5	30960560	30961560	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016703)	promoter-TSS (NM_016703)	-733.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	329.5	406.87	205.34	263.81	276.17	254.0	320.02	400.16	257.31
Merged-chr12-102453718-3	chr12	102453213	102454213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13900.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	233.4	187.08	117.47	219.28	195.0	169.6	194.34	269.28	105.55
Merged-chr1-151686903-3	chr1	151686412	151687412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	67815.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	104.11	84.32	72.15	136.29	69.51	90.83	70.76	112.75	50.59
Merged-chr1-160906849-1	chr1	160906349	160907349	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024952, intron 1 of 19)	CpG	438.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	161.32	173.25	116.54	189.6	181.01	144.68	186.94	128.23	100.55
Merged-chr4-149738113-3	chr4	149737621	149738621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177672)	promoter-TSS (NM_177672)	-53.0	NM_177672	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	34.32	19.35	17.57	55.33	20.53	23.31	32.74	15.03	15.61
Merged-chr14-30625138-3	chr14	30624613	30625613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1095.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	152.74	122.11	109.14	141.69	113.83	151.92	168.99	156.09	83.06
Merged-chr14-63080360-3	chr14	63079858	63080858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25285.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	279.16	294.9	207.19	316.44	280.37	282.93	299.96	411.66	157.38
Merged-chr5-147860566-3	chr5	147860063	147861063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025624)	promoter-TSS (NM_025624)	-65.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	172.76	218.41	223.84	158.56	210.4	254.0	196.45	227.72	131.78
Merged-chr18-58660037-3	chr18	58659539	58660539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025478, intron 1 of 4)	intron (NM_025478, intron 1 of 4)	557.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	93.82	104.6	108.22	101.88	83.51	119.76	79.21	84.01	62.45
Merged-chr2-27071345-3	chr2	27070847	27071847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025376, intron 1 of 4)	intron (NM_025376, intron 1 of 4)	814.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	15.45	10.6	5.55	8.77	6.06	4.82	7.39	7.96	2.5
Merged-chr16-20651664-3	chr16	20651194	20652194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027485)	promoter-TSS (NR_027485)	42.0	NM_134101	21762.0	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	45.76	36.86	67.52	57.35	48.98	69.13	64.43	54.83	32.48
Merged-chr19-41981379-3	chr19	41980859	41981859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145500)	promoter-TSS (NM_145500)	-223.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	178.48	178.78	163.72	186.9	153.01	181.66	185.89	177.31	130.53
Merged-chr17-47394410-3	chr17	47393912	47394912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008189)	TTS (NM_008189)	6194.0	NM_008189	14913.0	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	70.93	47.46	51.8	38.46	26.12	43.4	78.16	66.77	46.84
Merged-chr10-63240980-3	chr10	63240477	63241477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-2820.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	16.59	20.74	19.42	17.54	7.0	6.43	31.69	20.78	19.36
Merged-chr16-11176406-3	chr16	11175885	11176885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145931)	promoter-TSS (NM_145931)	8.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	376.98	371.85	308.01	315.09	259.38	266.86	293.62	306.86	217.96
Merged-chr3-106788513-3	chr3	106788001	106789001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1648.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	243.12	319.32	155.39	197.69	250.05	184.87	267.21	323.22	155.51
Merged-chr7-24601133-3	chr7	24600641	24601641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023154, intron 4 of 7)	intron (NM_023154, intron 4 of 7)	-10187.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	3.43	2.76	7.4	6.07	2.8	4.82	6.34	1.77	1.25
Merged-chr2-58160162-3	chr2	58159664	58160664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139200)	promoter-TSS (NM_139200)	-42.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	86.38	95.38	49.02	209.16	183.8	180.05	141.53	181.29	102.42
Merged-chr11-75654142-3	chr11	75653648	75654648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1867.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	322.07	225.32	172.97	367.05	220.66	218.63	288.34	291.39	169.25
Merged-chr1-91293904-2	chr1	91293405	91294405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4433.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	57.78	59.9	51.8	20.92	15.39	42.6	7.39	7.52	13.12
Merged-chr18-6104675-3	chr18	6104171	6105171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039692, intron 3 of 18)	L1MDa|LINE|L1	31427.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	19.45	23.96	24.97	18.89	14.93	29.74	20.07	9.73	16.24
Merged-chr14-73138752-3	chr14	73138247	73139247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3763.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	169.9	109.21	94.35	162.61	112.9	138.25	159.48	108.33	63.7
Merged-chrUn_JH584304-38637-1	chrUn_JH584304	38137	39137	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	21052.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	73.93	70.3	0.0
Merged-chr1-171845657-3	chr1	171845147	171846147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5950.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	108.12	67.74	30.52	138.32	88.17	77.97	105.62	82.69	56.21
Merged-chr7-132610656-3	chr7	132610163	132611163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029609)	promoter-TSS (NM_029609)	20.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	141.87	111.51	93.42	128.2	111.03	102.88	128.85	99.05	63.7
Merged-chr2-37452173-3	chr2	37451672	37452672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033960)	promoter-TSS (NM_001033960)	-82.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	122.99	102.29	86.95	129.55	100.3	98.87	105.62	96.83	86.18
Merged-chr10-94576097-3	chr10	94575605	94576605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177026)	promoter-TSS (NM_177026)	-158.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	158.46	139.16	88.8	170.03	136.69	170.4	151.03	97.72	59.33
Merged-chr1-74588212-3	chr1	74587703	74588703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310668)	promoter-TSS (NM_001310668)	-86.0	NM_001305652	66821.0	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	110.98	120.26	61.97	127.52	123.62	109.32	129.91	119.39	72.45
Merged-chr5-135149137-2	chr5	135148637	135149637	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-574.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	114.98	123.49	137.82	109.3	120.83	135.84	178.5	175.1	114.91
Merged-chr1-180811819-3	chr1	180811323	180812323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008210, exon 2 of 4)	exon (NM_008210, exon 2 of 4)	1782.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	57.78	82.02	65.67	57.35	51.32	40.19	69.71	77.38	63.08
Merged-chr3-131564687-3	chr3	131564202	131565202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011863)	promoter-TSS (NM_011863)	-66.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	81.23	63.59	67.52	75.57	70.44	81.99	86.61	71.19	59.95
Merged-chr8-123859416-4	chr8	123858821	123859821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028536, exon 2 of 4)	exon (NM_028536, exon 2 of 4)	888.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	85.81	77.41	68.45	64.77	64.84	64.3	74.99	65.88	56.21
Merged-chr7-81859055-3	chr7	81858531	81859531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145375)	promoter-TSS (NM_145375)	30.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	92.1	123.03	126.72	121.45	90.97	144.68	81.33	74.28	71.82
Merged-chr11-102284826-3	chr11	102284310	102285310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302506)	promoter-TSS (NM_001302506)	-10.0	NM_001302506	72053.0	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	157.89	124.41	123.94	145.74	124.56	93.24	151.03	131.77	71.82
Merged-chr13-95679966-2	chr13	95679463	95680463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 17 of 35)	intron (NM_027711, intron 17 of 35)	-16957.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	34.32	72.8	31.45	59.38	34.06	36.97	7.39	2.21	2.5
Merged-chr2-104507257-3	chr2	104506755	104507755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12766.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	10.3	7.83	10.17	13.49	7.0	8.04	4.22	3.1	11.24
Merged-chr6-38433793-3	chr6	38433295	38434295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177185)	promoter-TSS (NM_177185)	-130.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	273.44	241.91	233.09	213.89	227.66	223.45	202.79	194.55	164.25
Merged-chr10-93539951-3	chr10	93539468	93540468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027908)	promoter-TSS (NM_027908)	65.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	21.74	17.51	5.55	33.74	18.66	13.66	41.19	29.18	12.49
Merged-chr16-33770034-3	chr16	33769545	33770545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23992.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	58.92	52.99	34.22	68.82	48.05	38.58	113.01	107.89	67.45
Merged-chr5-88631079-3	chr5	88630563	88631563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	44517.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	201.93	234.08	125.79	198.37	182.4	143.07	191.17	240.1	93.68
Merged-chr12-100026871-3	chr12	100026379	100027379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	62380.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	32.61	33.64	14.8	49.93	35.45	46.62	46.47	30.95	30.6
Merged-chr5-136151745-3	chr5	136151240	136152240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178751, intron 2 of 2)	intron (NM_178751, intron 2 of 2)	12959.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	26.89	18.43	12.95	33.06	14.0	22.51	26.4	27.86	24.36
Merged-chr9-96196277-3	chr9	96195774	96196774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001184708)	promoter-TSS (NM_001184708)	-1.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	32.04	32.72	29.6	38.46	38.25	40.99	43.3	27.41	22.48
Merged-chr5-74068433-4	chr5	74067935	74068935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177561)	promoter-TSS (NM_177561)	-24.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	52.06	43.31	62.9	70.85	48.05	69.93	51.75	41.12	38.72
Merged-chr10-80017036-1	chr10	80016536	80017536	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347074, exon 1 of 23)	exon (NM_001347074, exon 1 of 23)	121.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	53.77	44.24	71.22	56.0	62.05	61.89	78.16	73.84	28.73
Merged-chr14-47373908-3	chr14	47373397	47374397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145953)	promoter-TSS (NM_001145953)	37.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	291.18	236.84	188.69	342.76	260.31	245.96	291.51	333.39	160.5
Merged-chr16-24629433-3	chr16	24628967	24629967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-92388.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	351.24	281.54	136.89	331.29	288.3	167.19	238.7	298.46	114.29
Merged-chr18-34409410-3	chr18	34408908	34409908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163004)	promoter-TSS (NM_001163004)	-15.0	NM_001163004	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	55.49	57.6	24.05	82.99	79.31	44.21	19.01	11.5	11.24
Merged-chr1-74248998-3	chr1	74248535	74249535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	12518.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	200.22	233.16	159.09	147.76	134.35	142.27	162.65	256.46	124.28
Merged-chr2-145808520-3	chr2	145808006	145809006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	22390.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	41.19	37.78	24.97	75.57	41.52	50.64	29.57	37.14	29.98
Merged-chrX-68678557-3	chrX	68678044	68679044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290424)	promoter-TSS (NM_001290424)	3.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	133.86	95.38	86.95	89.74	93.3	68.32	91.89	66.33	49.34
Merged-chr10-99169974-3	chr10	99169481	99170481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61846.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	236.83	240.53	81.4	234.13	183.34	128.61	173.21	202.95	110.54
Merged-chr6-115375514-3	chr6	115375009	115376009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	13160.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	80.66	64.05	53.65	88.39	76.04	57.87	79.21	100.81	35.6
Merged-chr16-11008400-3	chr16	11007887	11008887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040518)	promoter-TSS (NR_040518)	-511.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	208.8	178.32	145.22	213.89	174.01	181.66	139.42	182.17	77.44
Merged-chr9-114844489-3	chr9	114843938	114844938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-286.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	181.91	157.13	116.54	209.16	216.93	167.19	103.51	76.49	29.98
Merged-chr16-49970679-3	chr16	49970177	49971177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9783.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	147.59	159.89	72.15	183.52	145.55	131.02	171.1	166.7	83.06
Merged-chr13-49190205-3	chr13	49189702	49190702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	2655.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	272.87	240.53	183.14	354.23	260.31	238.73	323.19	338.26	121.16
Merged-chr13-113601312-3	chr13	113600829	113601829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	17235.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	157.31	149.29	88.8	249.65	181.01	143.07	194.34	246.73	121.78
Merged-chr14-45329715-3	chr14	45329218	45330218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025959)	promoter-TSS (NM_025959)	-106.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	93.24	103.22	86.02	91.76	72.31	69.93	91.89	74.73	53.71
Merged-chr19-41339385-3	chr19	41338913	41339913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	45657.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	411.31	363.56	209.04	408.88	293.43	231.49	285.17	306.42	149.26
Merged-chr17-33910148-3	chr17	33909661	33910661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	560.0	NM_001199733	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	411.31	358.03	262.69	338.03	327.49	242.74	311.57	370.09	204.85
Merged-chr17-88529009-3	chr17	88528520	88529520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1104.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	45.19	56.68	38.85	45.88	31.26	41.8	60.2	95.51	27.48
Merged-chr2-148752473-3	chr2	148751972	148752972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	2111.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	4.58	4.61	3.7	5.4	7.0	3.22	3.17	1.77	5.0
Merged-chr11-102189605-3	chr11	102189095	102190095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175935)	promoter-TSS (NM_175935)	-104.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	109.83	95.84	98.97	111.33	113.83	140.66	148.92	179.96	67.45
Merged-chr1-162574292-3	chr1	162573786	162574786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	intron (NM_016796, intron 1 of 7)	3458.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	89.24	88.01	41.62	183.52	141.35	163.97	120.41	131.32	71.2
Merged-chr5-137825263-3	chr5	137824757	137825757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	11021.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	52.06	36.4	37.92	40.48	28.92	30.54	29.57	36.26	21.23
Merged-chr7-39449451-3	chr7	39448968	39449968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-50.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	49.77	48.84	25.9	46.56	41.52	45.01	70.76	55.71	30.6
Merged-chr13-58448207-3	chr13	58447697	58448697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44854.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	57.21	40.09	38.85	44.53	33.12	32.15	50.7	52.18	26.23
Merged-chr5-127617456-3	chr5	127616959	127617959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133895)	promoter-TSS (NM_133895)	-67.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	161.89	151.6	169.27	172.73	160.48	155.13	157.37	130.44	98.68
Merged-chr10-62450105-3	chr10	62449628	62450628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-390.0	NM_181423	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	216.24	204.13	154.47	238.85	244.45	225.06	259.82	234.35	101.17
Merged-chr12-102417859-3	chr12	102417374	102418374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	21939.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	88.1	76.95	66.6	99.18	92.37	78.77	69.71	101.7	44.34
Merged-chr19-5803227-1	chr19	5802727	5803727	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-555.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	470.23	513.77	344.08	439.92	465.58	351.26	371.78	519.99	301.02
Merged-chr17-46153568-3	chr17	46153080	46154080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-29.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	29.17	45.16	45.32	36.43	40.59	68.32	62.31	54.39	51.21
Merged-chr13-73434221-3	chr13	73433725	73434725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33158.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	45.19	31.33	20.35	37.78	27.99	19.29	45.42	35.82	11.87
Merged-chr8-85840793-3	chr8	85840311	85841311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199446)	promoter-TSS (NM_199446)	138.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	210.52	203.21	220.14	157.21	195.47	197.73	220.74	158.74	109.92
Merged-chr4-141646212-3	chr4	141645695	141646695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17920.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	164.18	152.52	131.34	100.53	57.38	56.27	192.23	279.01	108.04
Merged-chr13-76098688-3	chr13	76098196	76099196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	-36.0	NM_029847	77041.0	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	48.05	64.97	46.25	61.4	48.98	45.82	49.64	71.19	53.08
Merged-chr16-17070156-3	chr16	17069671	17070671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291053)	promoter-TSS (NM_001291053)	32.0	NM_001291047	106369.0	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee like 1	protein-coding	4.0	2.76	1.85	3.37	6.06	8.04	8.45	1.77	5.0
Merged-chr7-63905338-3	chr7	63904850	63905850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	L1MC3|LINE|L1	-11507.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	237.4	145.61	103.59	258.42	143.68	164.78	224.97	185.27	108.04
Merged-chr11-120484621-3	chr11	120484132	120485132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027204)	promoter-TSS (NM_027204)	-5.0	NM_027204	56282.0	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|L12mt|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	69.22	61.28	112.84	77.59	74.17	126.19	76.05	72.52	50.59
Merged-chr2-144290526-3	chr2	144290029	144291029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	19625.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	38.9	18.43	14.8	25.64	24.72	18.49	15.84	19.01	21.23
Merged-chr10-56598409-3	chr10	56597902	56598902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166421.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	5.15	7.37	5.55	4.72	9.33	9.65	4.22	5.31	5.62
Merged-chr5-100614260-3	chr5	100613769	100614769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42064.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	38.33	32.25	20.35	42.51	21.46	20.9	76.05	50.85	41.84
Merged-chr15-35559266-3	chr15	35558777	35559777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 19 of 61)	intron (NM_177151, intron 19 of 61)	101641.0	NR_035527	100316736.0		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	2.29	5.07	0.0	6.75	8.4	3.22	4.22	2.65	2.5
Merged-chr10-81606219-3	chr10	81605715	81606715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030677)	promoter-TSS (NR_030677)	-93.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	94.96	108.75	117.47	76.24	85.37	107.71	120.41	146.8	76.19
Merged-chr17-31520054-3	chr17	31519553	31520553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-62.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	175.05	210.12	134.12	166.66	144.62	147.09	210.18	191.46	119.28
Merged-chr17-47275847-3	chr17	47275363	47276363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	45633.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	106.4	83.86	69.37	84.34	55.05	108.51	110.9	97.72	68.07
Merged-chr12-70477743-3	chr12	70477231	70478231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	LTR16E2|LTR|ERVL	24577.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	124.14	139.16	117.47	130.22	122.23	152.72	146.81	171.12	105.55
Merged-chr2-91206460-3	chr2	91205955	91206955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 6 of 10)	intron (NM_001357067, intron 6 of 10)	3543.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	256.85	220.25	216.44	211.86	140.89	172.01	193.28	175.54	137.4
Merged-chr10-45048827-3	chr10	45048338	45049338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18376.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	13.73	28.11	11.1	56.68	26.12	41.8	36.97	25.65	6.87
Merged-chr2-181288124-3	chr2	181287641	181288641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-175.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	259.71	139.16	188.69	255.04	119.89	149.5	248.2	200.74	99.3
Merged-chr8-35567479-3	chr8	35566988	35567988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20310.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	18.88	20.27	25.9	41.16	25.19	41.8	11.62	11.05	13.74
Merged-chr1-180330408-3	chr1	180329908	180330908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081175)	promoter-TSS (NM_001081175)	-68.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	64.64	85.71	60.12	59.38	54.11	94.04	77.1	87.55	59.95
Merged-chr16-38742278-3	chr16	38741770	38742770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285793)	promoter-TSS (NM_001285793)	11.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	13.73	12.44	7.4	21.59	10.73	13.66	36.97	15.92	9.99
Merged-chr8-105471498-3	chr8	105471017	105472017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026481)	promoter-TSS (NM_026481)	-95.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	15.45	8.75	2.77	22.94	5.13	8.04	10.56	8.84	3.12
Merged-chr3-117868915-3	chr3	117868375	117869375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029655)	promoter-TSS (NM_029655)	61.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	66.36	78.79	52.72	92.44	78.84	77.16	66.54	72.96	58.71
Merged-chr6-72345187-3	chr6	72344689	72345689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-14.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	278.59	223.48	175.74	234.13	222.06	159.15	249.26	313.94	119.91
Merged-chr4-136285494-3	chr4	136284998	136285998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009557)	promoter-TSS (NM_009557)	-569.0	NM_009557	22704.0	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	64.64	99.99	74.92	87.04	107.3	91.63	98.23	98.6	73.07
Merged-chr7-24531793-2	chr7	24531282	24532282	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	1134.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	56.06	36.4	24.05	41.83	23.79	41.8	30.63	16.8	18.74
Merged-chr6-39241777-3	chr6	39241251	39242251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34978.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	90.96	92.62	73.07	120.1	119.43	67.52	117.24	159.18	63.7
Merged-chr2-160044731-3	chr2	160044238	160045238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	28085.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	63.5	62.21	32.37	85.01	42.92	53.05	31.69	34.05	38.72
Merged-chr13-43786470-3	chr13	43785966	43786966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	1354.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	264.86	210.58	176.67	307.0	246.32	165.58	170.05	240.1	129.9
Merged-chr1-152902857-3	chr1	152902362	152903362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359257)	promoter-TSS (NM_001359257)	-216.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	280.31	202.28	227.54	290.13	166.08	200.95	252.43	209.15	155.51
Merged-chr3-89913205-3	chr3	89912709	89913709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310676)	promoter-TSS (NM_001310676)	-13.0	NM_010559	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	264.29	244.68	188.69	198.37	202.0	170.4	174.27	162.72	149.26
Merged-chr9-107644746-3	chr9	107644251	107645251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9409.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	37.76	36.86	29.6	29.01	35.92	19.29	43.3	39.8	29.98
Merged-chr10-96377723-3	chr10	96377231	96378231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151524.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	66.36	64.05	35.15	79.62	48.98	75.56	55.98	54.83	39.97
Merged-chr11-6520941-3	chr11	6520410	6521410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178440)	promoter-TSS (NM_178440)	48.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	57.21	45.62	74.0	50.6	37.79	69.13	67.6	64.56	55.58
Merged-chr12-110889183-3	chr12	110888672	110889672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	-27.0	NM_026048	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	499.4	390.28	349.63	496.59	358.28	275.7	388.68	389.11	150.51
Merged-chr7-98816227-3	chr7	98815744	98816744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-18868.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	135.58	69.12	61.97	170.7	95.63	103.69	97.17	108.77	36.85
Merged-chr2-148732467-3	chr2	148731988	148732988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019632)	promoter-TSS (NM_019632)	-68.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	28.03	21.66	18.5	23.62	27.99	28.13	16.9	17.24	12.49
Merged-chr1-52801844-3	chr1	52801298	52802298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	15890.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	56.63	77.87	49.95	51.28	48.05	55.46	64.43	51.29	43.09
Merged-chr2-112239572-5	chr2	112239065	112240065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207206)	promoter-TSS (NM_207206)	-276.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	60.07	65.89	61.05	56.0	48.98	107.71	60.2	67.65	61.83
Merged-chr16-38394381-3	chr16	38393874	38394874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32184.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	40.04	40.55	14.8	74.22	66.24	37.78	51.75	45.99	38.1
Merged-chr9-119983213-3	chr9	119982709	119983709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-186.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	411.88	323.01	257.14	353.55	291.57	218.63	333.75	363.02	196.1
Merged-chr1-9876997-3	chr1	9876506	9877506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133220, intron 6 of 17)	intron (NM_133220, intron 6 of 17)	28725.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	60.64	55.75	23.12	52.63	33.59	44.21	58.09	66.77	43.72
Merged-chr7-30626155-3	chr7	30625648	30626648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025628)	promoter-TSS (NM_025628)	3.0	NM_025628	110323.0	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	51.48	70.04	53.65	44.53	54.11	79.58	67.6	61.02	44.97
Merged-chr7-4501009-3	chr7	4500520	4501520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	intron (NM_029834, intron 1 of 21)	660.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	368.97	304.58	223.84	319.82	224.86	204.16	284.11	296.25	181.74
Merged-chr8-71286482-3	chr8	71285990	71286990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	13776.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	106.4	110.13	87.87	80.29	84.9	83.59	123.57	117.62	54.96
Merged-chr17-71475455-3	chr17	71474948	71475948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-105.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	288.32	260.8	227.54	244.92	225.32	242.74	292.56	372.3	214.84
Merged-chr6-97461909-3	chr6	97461411	97462411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MLT1A|LTR|ERVL-MaLR	-2625.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	181.91	195.83	147.07	267.19	193.13	208.18	231.3	278.57	105.55
Merged-chr4-116994461-3	chr4	116993958	116994958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-45.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	21.17	32.72	14.8	22.94	27.06	28.94	42.25	45.1	20.61
Merged-chr2-27762720-3	chr2	27762225	27763225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	52142.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	258.0	229.93	178.52	224.01	205.73	192.91	214.41	237.44	145.51
Merged-chr1-105925841-3	chr1	105925303	105926303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64479.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	133.86	137.77	115.62	164.63	119.89	117.35	181.66	196.32	88.06
Merged-chr6-97431723-3	chr6	97431219	97432219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	27567.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	287.17	236.84	168.34	282.71	192.2	209.79	216.52	284.76	108.67
Merged-chr1-91041802-3	chr1	91041306	91042306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-11638.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	98.39	85.25	59.2	85.01	71.38	83.59	70.76	70.3	59.33
Merged-chr4-45342547-1	chr4	45342047	45343047	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153167, exon 1 of 7)	exon (NM_153167, exon 1 of 7)	446.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	185.92	180.17	177.59	164.63	160.48	171.21	179.55	107.45	128.65
Merged-chr9-124425712-3	chr9	124425214	124426214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027950)	TTS (NR_027950)	1927.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	332.36	228.55	194.24	302.95	213.19	151.11	316.86	283.43	158.63
Merged-chr18-67205373-3	chr18	67204880	67205880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024190)	promoter-TSS (NM_024190)	21.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	171.04	203.67	118.39	139.67	160.48	121.37	155.26	148.57	56.83
Merged-chr15-6562524-3	chr15	6561999	6562999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17348.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	139.01	133.17	77.7	166.66	80.71	71.54	124.63	106.12	82.44
Merged-chr19-53313321-3	chr19	53312779	53313779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	CpG	1834.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	327.21	329.92	191.47	392.01	340.08	268.47	255.6	278.12	177.99
Merged-chr10-10468862-3	chr10	10468361	10469361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	3453.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	215.66	234.08	134.12	189.6	218.33	200.95	296.79	334.28	131.15
Merged-chr10-79985034-3	chr10	79984523	79985523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-763.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	264.86	300.43	157.24	242.9	261.71	175.23	303.13	382.47	158.63
Merged-chr4-95850383-5	chr4	95849915	95850915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	116620.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	26.31	55.29	24.05	27.66	25.66	41.8	41.19	47.31	36.22
Merged-chr14-54749507-3	chr14	54749027	54750027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	32359.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	28.03	51.15	30.52	43.86	32.19	63.5	49.64	48.2	23.73
Merged-chr7-28379248-4	chr7	28378730	28379730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011756)	promoter-TSS (NM_011756)	-2.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	225.39	134.55	123.94	217.93	134.82	163.17	208.07	200.74	93.68
Merged-chr5-115282647-3	chr5	115282142	115283142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026504, intron 1 of 6)	intron (NM_026504, intron 1 of 6)	2940.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	155.6	143.76	114.69	168.68	116.16	97.26	133.08	128.67	58.08
Merged-chr4-156198064-3	chr4	156197584	156198584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021604)	promoter-TSS (NM_021604)	-596.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	327.79	276.01	177.59	295.53	206.66	211.4	241.87	204.28	145.51
Merged-chr2-142903058-3	chr2	142902552	142903552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131921)	promoter-TSS (NR_131921)	87.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	22.88	28.11	27.75	31.71	24.72	38.58	39.08	21.67	11.87
Merged-chr9-50554844-3	chr9	50554338	50555338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357222, exon 1 of 6)	5' UTR (NM_001357222, exon 1 of 6)	138.0	NM_001357222	16173.0	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	113.27	173.25	111.92	132.24	108.23	134.23	117.24	137.96	123.03
Merged-chr4-32358820-3	chr4	32358320	32359320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58615.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	120.13	81.1	58.27	122.8	97.03	73.14	16.9	13.71	11.87
Merged-chr1-93804226-1	chr1	93803726	93804726	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025454, intron 1 of 7)	CpG	261.0	NM_025454	66262.0	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	251.7	136.85	132.27	170.7	114.76	118.16	144.7	98.16	56.83
Merged-chr7-141024934-3	chr7	141024429	141025429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8037.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	81.8	69.58	92.5	80.29	53.65	98.87	116.18	122.48	79.32
Merged-chr5-114130839-3	chr5	114130329	114131329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	-327.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	61.21	56.68	36.07	85.69	98.43	57.87	120.41	106.12	28.73
Merged-chr9-47736243-3	chr9	47735729	47736729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	81979.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	80.66	70.04	38.85	97.16	79.31	58.68	68.65	89.32	38.72
Merged-chr11-79870623-3	chr11	79870095	79871095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91792.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	273.44	294.44	173.89	429.8	394.2	269.27	403.46	535.46	188.61
Merged-chr14-30908139-3	chr14	30907646	30908646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008407)	TTS (NM_008407)	15441.0	NM_008407	16426.0	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	17.73	17.05	9.25	19.57	15.86	22.51	54.92	33.6	19.36
Merged-chr1-172501874-3	chr1	172501364	172502364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	1618.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	60.07	33.64	15.72	41.16	25.19	22.51	54.92	43.77	23.11
Merged-chr17-24351969-3	chr17	24351479	24352479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-44.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	134.43	141.0	101.74	130.9	154.88	149.5	120.41	120.71	69.95
Merged-chrX-107178958-1	chrX	107178458	107179458	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29343.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	2.29	4.61	11.1	7.42	3.73	1.61	4.22	1.77	2.5
Merged-chr8-111876777-3	chr8	111876246	111877246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-71.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	56.06	64.05	37.0	70.85	64.38	69.13	72.88	55.71	38.1
Merged-chr1-131679838-3	chr1	131679332	131680332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8863.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	47.48	23.96	16.65	49.25	35.45	24.92	26.4	20.78	11.87
Merged-chr8-94179058-3	chr8	94178554	94179554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013602)	promoter-TSS (NM_013602)	-35.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	247.7	261.73	165.57	253.02	268.24	214.61	223.91	301.12	177.99
Merged-chr4-116672966-3	chr4	116672467	116673467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12632.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	50.34	63.13	56.42	64.77	62.98	73.95	58.09	72.07	49.34
Merged-chr4-43478352-3	chr4	43477845	43478845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5364.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	89.24	79.72	79.55	80.29	64.38	78.77	102.45	103.91	74.32
Merged-chr7-28825204-3	chr7	28824696	28825696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016772)	promoter-TSS (NM_016772)	-142.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	176.19	165.42	139.67	149.79	174.01	110.12	95.06	111.87	63.08
Merged-chr5-141241386-3	chr5	141240860	141241860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177879)	promoter-TSS (NM_177879)	-174.0	NM_177879	330222.0	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	2.29	0.92	0.0	3.37	1.87	0.8	3.17	0.88	0.0
Merged-chr7-129575929-3	chr7	129575421	129576421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15942.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	78.37	120.73	65.67	130.9	160.95	111.73	119.35	142.82	77.44
Merged-chr2-68434701-3	chr2	68434169	68435169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	37312.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	44.62	33.64	36.07	50.6	32.19	22.51	70.76	87.55	20.61
Merged-chr15-78298828-3	chr15	78298328	78299328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	intron (NM_001287389, intron 1 of 11)	6893.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	13.73	11.98	1.85	10.12	7.93	9.65	7.39	5.31	5.62
Merged-chr5-66151956-3	chr5	66151447	66152447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	7.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	225.39	252.51	220.14	263.14	228.59	188.89	280.95	294.93	170.5
Merged-chr6-114875277-3	chr6	114874779	114875779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	46542.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	153.31	138.24	146.14	132.24	116.63	98.87	138.36	131.32	86.18
Merged-chr13-21453660-3	chr13	21453156	21454156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013786)	promoter-TSS (NM_001013786)	71.0	NM_001013786	432731.0	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	143.59	177.4	104.52	123.47	138.55	111.73	119.35	95.07	54.33
Merged-chr7-114453376-3	chr7	114452886	114453886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	38132.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	48.62	48.84	28.67	50.6	51.32	44.21	51.75	60.58	58.08
Merged-chr11-48902196-3	chr11	48901699	48902699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-47.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	139.58	164.96	110.07	140.34	96.1	99.67	153.15	176.42	98.68
Merged-chr6-120037116-3	chr6	120036627	120037627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199083, exon 1 of 28)	exon (NM_001199083, exon 1 of 28)	1528.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	71.51	81.56	64.75	91.76	92.37	102.08	88.72	73.4	58.08
Merged-chr1-93444968-2	chr1	93444485	93445485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133808, intron 1 of 27)	CpG	716.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	275.16	303.66	191.47	256.39	220.19	197.73	186.94	168.02	159.25
Merged-chr2-29673015-3	chr2	29672519	29673519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	53299.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	50.34	36.4	32.37	53.98	52.72	40.19	29.57	22.11	26.85
Merged-chr2-73214440-3	chr2	73213934	73214934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025942)	promoter-TSS (NM_025942)	13.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	28.6	28.11	29.6	45.21	43.39	28.94	49.64	57.48	29.35
Merged-chr4-123573032-3	chr4	123572542	123573542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-43378.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	176.19	215.19	141.52	138.32	174.47	153.52	168.99	208.7	118.66
Merged-chr1-144140037-3	chr1	144139530	144140530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153171, intron 5 of 5)	intron (NM_153171, intron 5 of 5)	37342.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	16.59	9.22	22.2	12.82	7.93	25.72	12.67	9.73	10.62
Merged-chr14-73176024-3	chr14	73175541	73176541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 12 of 14)	intron (NM_134083, intron 12 of 14)	30810.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	66.36	52.53	38.85	95.81	65.31	53.85	67.6	46.43	17.49
Merged-chr2-118883474-3	chr2	118882962	118883962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18153.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	1.14	3.23	5.55	4.72	4.67	1.61	9.51	2.65	6.87
Merged-chr1-125463034-3	chr1	125462486	125463486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27259.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	33.75	41.47	37.0	41.16	45.25	47.42	47.53	58.81	46.84
Merged-chr6-125349655-3	chr6	125349118	125350118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011609)	promoter-TSS (NM_011609)	-105.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	227.11	236.84	205.34	179.47	139.49	138.25	238.7	237.0	150.51
Merged-chr8-84638780-1	chr8	84638280	84639280	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007578, exon 46 of 47)	exon (NM_007578, exon 46 of 47)	24072.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	68.65	28.11	56.42	43.86	27.52	58.68	41.19	35.82	49.34
Merged-chr1-138288934-3	chr1	138288442	138289442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177397, exon 3 of 3)	3' UTR (NM_177397, exon 3 of 3)	15204.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	17.73	16.59	13.87	21.59	22.86	16.08	14.79	16.8	20.61
Merged-chr17-87672448-3	chr17	87671927	87672927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008628)	promoter-TSS (NM_008628)	-130.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	17.16	17.51	35.15	22.27	21.93	24.92	16.9	16.8	10.62
Merged-chr12-69372005-3	chr12	69371472	69372472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-178.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	465.65	382.91	336.68	454.76	411.93	340.0	433.04	391.32	223.58
Merged-chr10-40883446-3	chr10	40882949	40883949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	-85.0	NM_031877	83767.0	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	81.23	89.39	51.8	72.87	88.17	49.83	110.9	101.7	33.72
Merged-chr1-34315619-1	chr1	34315119	34316119	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117580.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	9.72	17.05	22.2	12.82	7.46	20.9	7.39	10.61	12.49
Merged-chr18-79330290-3	chr18	79329798	79330798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-220907.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	12.59	8.29	3.7	14.17	7.93	18.49	6.34	9.29	10.62
Merged-chr10-68276514-3	chr10	68276017	68277017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	2209.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	295.18	237.3	198.87	266.51	177.27	172.81	289.39	321.46	186.11
Merged-chr15-86182772-3	chr15	86182272	86183272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2956.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	169.33	133.17	119.32	147.76	147.42	146.29	175.33	163.16	99.3
Merged-chrX-93863545-3	chrX	93863052	93864052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31457.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	25.17	31.33	27.75	38.46	28.46	26.53	23.24	19.01	19.98
Merged-chr5-137601158-3	chr5	137600660	137601660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030037)	promoter-TSS (NM_030037)	-101.0	NM_030037	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	200.22	203.67	123.02	223.33	211.33	200.14	196.45	229.48	118.04
Merged-chr5-100798646-3	chr5	100798133	100799133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081107)	promoter-TSS (NM_001081107)	-33.0	NM_001081107	191578.0	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	23.45	16.13	15.72	18.89	15.86	26.53	29.57	15.92	8.74
Merged-chr10-80676499-3	chr10	80675985	80676985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021462)	promoter-TSS (NM_021462)	-192.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	211.09	206.89	130.42	215.91	199.2	130.21	172.16	241.87	81.19
Merged-chr4-42999795-3	chr4	42999251	43000251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009503, intron 1 of 16)	CpG	756.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	331.79	413.78	297.84	307.0	441.78	288.56	323.19	340.47	246.69
Merged-chr11-32324741-3	chr11	32324202	32325202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-23109.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	26.31	37.78	35.15	19.57	12.13	9.65	4.22	13.27	9.99
Merged-chr4-142098009-3	chr4	142097524	142098524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13720.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	219.67	136.85	131.34	182.85	100.77	131.82	186.94	172.89	101.8
Merged-chr11-113450269-1	chr11	113449769	113450769	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	115546.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.86	2.76	12.02	14.17	12.13	25.72	4.22	1.33	9.37
Merged-chr7-128048987-3	chr7	128048464	128049464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-13676.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	61.78	51.61	48.1	33.74	28.46	36.97	35.91	42.01	14.99
Merged-chr4-120993270-3	chr4	120992765	120993765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-19943.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	45.76	62.21	64.75	54.65	48.52	38.58	44.36	30.51	44.97
Merged-chr5-99414498-3	chr5	99413988	99414988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-161561.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	187.06	193.07	113.77	180.82	158.61	163.97	137.3	165.81	71.2
Merged-chr17-87247074-3	chr17	87246575	87247575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18872.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	127.57	118.42	81.4	122.8	73.71	109.32	71.82	68.54	53.71
Merged-chr2-84656013-3	chr2	84655552	84656552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 1 of 18)	B1_Mur2|SINE|Alu	2925.0	NM_001355064	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	35.47	26.73	27.75	31.71	25.19	18.49	31.69	30.95	19.36
Merged-chr1-149957690-3	chr1	149957199	149958199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3591.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	130.43	118.88	87.87	133.59	94.23	129.41	102.45	104.35	64.33
Merged-chr16-93832202-3	chr16	93831701	93832701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045529)	promoter-TSS (NM_001045529)	80.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	255.71	208.74	197.94	196.34	156.28	166.38	220.74	197.65	99.92
Merged-chr19-6296750-3	chr19	6296237	6297237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 3 of 4)	intron (NM_010119, intron 3 of 4)	-9720.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	163.04	138.7	120.24	151.14	113.36	147.09	157.37	176.87	87.43
Merged-chr7-43530531-3	chr7	43529990	43530990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111058, intron 3 of 6)	intron (NM_001111058, intron 3 of 6)	2681.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	53.77	54.37	37.0	49.93	39.19	57.87	29.57	29.63	32.48
Merged-chr18-61107792-3	chr18	61107316	61108316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	2244.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	155.6	136.85	122.09	143.04	112.9	152.72	210.18	166.25	114.29
Merged-chr2-152847923-3	chr2	152847418	152848418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141976)	promoter-TSS (NM_001141976)	-46.0	NM_001141975	72119.0	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	44.05	44.24	29.6	31.71	28.46	32.96	50.7	61.9	29.35
Merged-chr7-27167192-3	chr7	27166684	27167684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-382.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	331.79	369.09	298.76	305.65	249.58	220.24	320.02	364.35	197.35
Merged-chr18-3507880-3	chr18	3507400	3508400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-57.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	33.75	17.05	12.95	22.94	17.73	22.51	26.4	17.24	15.61
Merged-chr7-49462671-3	chr7	49462185	49463185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 9 of 37)	intron (NM_175272, intron 9 of 37)	174150.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	40.62	56.68	23.12	47.23	56.45	47.42	48.58	29.63	23.73
Merged-chr11-115048431-3	chr11	115047902	115048902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199201).2	promoter-TSS (NM_199201).2	-107.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	114.41	95.38	36.07	261.12	207.6	159.95	158.43	134.42	69.32
Merged-chr4-101172888-3	chr4	101172360	101173360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 10 of 24)	intron (NM_146145, intron 10 of 24)	92422.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	38.9	41.93	9.25	53.3	35.92	23.31	27.46	29.63	28.73
Merged-chr4-88878449-1	chr4	88877949	88878949	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1752.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	5.15	5.07	0.0	7.42	4.67	3.22	4.22	1.77	1.25
Merged-chr5-135472619-3	chr5	135472115	135473115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	72507.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	248.84	207.81	120.24	285.41	233.72	164.78	177.44	221.53	129.9
Merged-chr9-119981834-6	chr9	119981287	119982287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1236.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	118.99	77.87	98.05	86.36	73.71	54.66	126.74	108.77	94.3
Merged-chr14-8111755-3	chr14	8111259	8112259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13548.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	77.23	60.82	39.77	79.62	57.85	27.33	116.18	84.9	39.35
Merged-chr1-128103184-3	chr1	128102688	128103688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	-118.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	173.33	205.97	122.09	160.58	161.88	114.94	177.44	199.42	113.04
Merged-chr10-81366243-3	chr10	81365732	81366732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014836)	promoter-TSS (NM_001014836)	-412.0	NM_001014836	432479.0	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	102.97	79.72	55.5	103.91	63.91	43.4	72.88	63.23	46.84
Merged-chr5-112254734-3	chr5	112254256	112255256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_001312895	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	83.52	70.5	85.1	73.54	49.92	69.13	89.78	95.95	79.32
Merged-chr2-106003283-3	chr2	106002778	106003778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033993, exon 1 of 4)	non-coding (NR_033993, exon 1 of 4)	271.0	NM_026992	99349.0	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	77.23	61.28	20.35	66.12	39.19	54.66	50.7	32.72	16.24
Merged-chr8-42210221-1	chr8	42209721	42210721	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	382954.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.29	0.92	4.62	1.35	5.13	4.02	0.0	3.98	0.0
Merged-chr11-116671609-3	chr11	116671101	116672101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027819)	promoter-TSS (NR_027819)	-59.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	96.68	78.79	82.32	116.73	92.37	107.71	125.69	121.15	74.94
Merged-chr13-34738695-3	chr13	34738187	34739187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138746)	promoter-TSS (NM_138746)	-955.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	30.32	23.5	20.35	31.04	21.46	12.86	19.01	14.15	16.86
Merged-chr13-5779588-3	chr13	5779083	5780083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78509.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	133.29	170.49	61.05	128.2	149.75	42.6	90.83	128.67	45.59
Merged-chr1-136138411-3	chr1	136137902	136138902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	L3b|LINE|CR1	7012.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	161.89	118.88	110.07	167.33	105.43	130.21	255.6	233.91	113.66
Merged-chr1-179434929-3	chr1	179434409	179435409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	83132.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	29.17	42.85	37.0	27.66	18.19	42.6	25.35	22.99	29.98
Merged-chr16-16571542-3	chr16	16571039	16572039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-11320.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	121.28	166.8	77.7	130.9	86.3	62.7	118.29	160.95	54.96
Merged-chr4-132422544-3	chr4	132422040	132423040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175306)	promoter-TSS (NM_175306)	-94.0	NM_175306	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	97.25	81.1	92.5	83.66	96.1	90.02	122.52	116.29	60.58
Merged-chr4-10965175-3	chr4	10964600	10965600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42519.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	53.2	54.83	63.82	47.23	40.12	57.07	80.27	73.4	42.47
Merged-chr10-127621785-3	chr10	127621307	127622307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-659.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	235.11	159.89	170.19	261.12	161.41	223.45	226.02	225.51	161.75
Merged-chr2-127008692-3	chr2	127008183	127009183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175550)	promoter-TSS (NM_175550)	-28.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	23.45	25.34	44.4	43.18	30.32	49.83	39.08	37.14	28.73
Merged-chr2-12317573-3	chr2	12317073	12318073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15629.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	31.46	25.34	14.8	29.69	26.12	42.6	21.12	24.76	25.61
Merged-chr15-89089075-3	chr15	89088573	89089573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027905)	promoter-TSS (NM_027905)	35.0	NM_027905	223776.0	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	25.74	20.74	37.92	32.39	16.33	30.54	42.25	17.24	20.61
Merged-chr8-66386243-3	chr8	66385770	66386770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166375)	promoter-TSS (NM_001166375)	-31.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	66.93	86.63	38.85	78.27	77.91	79.58	138.36	132.21	48.71
Merged-chr2-124858763-3	chr2	124858267	124859267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205186.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	9.72	11.98	6.47	14.17	9.33	25.72	10.56	6.19	3.75
Merged-chr11-83299010-3	chr11	83298508	83299508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134025)	promoter-TSS (NM_134025)	-31.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	532.58	457.56	304.31	504.01	423.59	277.31	374.95	369.65	184.24
Merged-chr3-126611654-1	chr3	126611154	126612154	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14703.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	78.94	135.01	74.92	97.83	89.1	62.7	98.23	74.73	58.71
Merged-chr2-164441989-1	chr2	164441489	164442489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	1199.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	8.58	2.76	6.47	12.82	6.06	7.23	3.17	1.77	6.25
Merged-chr8-14890484-1	chr8	14889984	14890984	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1948.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	405.01	369.55	246.04	359.62	372.74	267.66	309.46	410.77	225.45
Merged-chr1-77438768-1	chr1	77438268	77439268	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	58000.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	4.0	5.53	7.4	3.37	5.13	1.61	0.0	2.21	3.12
Merged-chr15-77306847-4	chr15	77306269	77307269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110827, exon 1 of 14)	5' UTR (NM_001110827, exon 1 of 14)	284.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	17.16	17.97	24.97	32.39	28.92	49.83	27.46	10.61	25.61
Merged-chr12-91766483-3	chr12	91765986	91766986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	19950.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	434.19	349.74	190.54	373.12	301.36	191.3	343.26	389.55	196.73
Merged-chr11-23805986-3	chr11	23805493	23806493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35023.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	11.44	5.07	5.55	12.82	17.26	7.23	9.51	4.42	5.0
Merged-chr4-116720836-3	chr4	116720335	116721335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146151)	promoter-TSS (NM_146151)	-120.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	24.6	27.19	18.5	27.66	32.19	28.94	33.8	36.7	19.98
Merged-chr7-45103836-3	chr7	45103337	45104337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010189)	promoter-TSS (NM_010189)	-15.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	72.08	64.97	81.4	86.36	48.98	83.59	64.43	76.94	71.2
Merged-chr18-32240267-3	chr18	32239771	32240771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133658)	promoter-TSS (NM_133658)	-60.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	85.81	130.86	120.24	89.06	115.69	135.04	113.01	119.83	69.32
Merged-chr8-84236202-3	chr8	84235712	84236712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	830.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	175.05	121.19	86.95	155.86	80.24	79.58	115.12	90.64	69.95
Merged-chr7-4082971-3	chr7	4082473	4083473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-19769.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	58.92	73.26	61.97	51.28	45.72	53.05	59.15	59.69	49.96
Merged-chr17-47175002-4	chr17	47174503	47175503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	34061.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	72.08	68.2	79.55	73.54	69.98	85.2	68.65	53.94	34.97
Merged-chr11-73031001-3	chr11	73030517	73031517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 9 of 15)	intron (NM_018883, intron 9 of 15)	12009.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	6.86	6.91	18.5	12.82	7.0	17.68	9.51	7.52	3.75
Merged-chr11-75592852-3	chr11	75592367	75593367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	4788.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	52.63	39.63	59.2	55.33	30.32	54.66	57.03	46.43	54.96
Merged-chr8-77610769-3	chr8	77610265	77611265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145599)	promoter-TSS (NM_145599)	-112.0	NM_145599	234463.0	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	16.02	13.36	1.85	13.49	12.13	16.08	16.9	7.52	14.99
Merged-chr6-16884109-3	chr6	16883606	16884606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	14335.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	109.26	109.21	57.35	73.54	63.91	97.26	106.67	114.52	59.33
Merged-chr9-107640352-3	chr9	107639883	107640883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5041.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	158.46	89.85	72.15	128.2	65.78	115.75	136.25	90.64	76.19
Merged-chr13-23763643-3	chr13	23763152	23764152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030609)	promoter-TSS (NM_030609)	-16.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	84.09	129.94	110.99	91.76	83.51	81.99	92.94	158.74	99.92
Merged-chr16-5013588-3	chr16	5013086	5014086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133185)	promoter-TSS (NM_133185)	-33.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	76.08	45.62	47.17	59.38	58.31	49.03	66.54	63.23	31.85
Merged-chr13-100594233-1	chr13	100593733	100594733	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22711.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	1.14	0.46	0.0	2.7	0.93	1.61	22.18	77.38	47.46
Merged-chr2-92065482-3	chr2	92065003	92066003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41333.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	43.48	29.95	24.05	41.83	17.26	21.7	26.4	19.46	12.49
Merged-chr1-120519641-3	chr1	120519133	120520133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14609.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	32.61	21.2	16.65	16.87	4.67	3.22	41.19	19.46	15.61
Merged-chr2-129546992-3	chr2	129546492	129547492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-10390.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	226.53	135.47	93.42	180.15	86.3	67.52	106.67	127.79	61.2
Merged-chr6-129471569-3	chr6	129471069	129472069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1210.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	162.46	205.51	102.67	175.43	127.82	144.68	204.9	245.4	104.92
Merged-chr8-94387489-3	chr8	94386982	94387982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357205, intron 1 of 7)	intron (NM_001357205, intron 1 of 7)	1053.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	380.42	293.52	210.89	372.44	276.64	215.42	286.23	290.95	138.65
Merged-chr15-84235494-3	chr15	84234985	84235985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	3442.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	161.32	188.92	128.57	157.88	144.62	147.09	154.2	160.06	121.16
Merged-chr12-111726308-3	chr12	111725806	111726806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 3 of 5)	intron (NM_001163388, intron 3 of 5)	13037.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	16.59	11.52	7.4	6.75	5.6	16.88	12.67	3.1	7.49
Merged-chr15-96654929-3	chr15	96654422	96655422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12009.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	105.83	111.97	86.02	76.24	87.7	69.93	89.78	118.94	59.95
Merged-chr13-64153372-3	chr13	64152874	64153874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-175.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	130.43	114.27	78.62	112.68	100.77	101.28	140.47	164.49	76.82
Merged-chr6-97280721-3	chr6	97280260	97281260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27980.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	25.17	21.66	14.8	22.94	14.0	19.29	38.02	25.65	9.99
Merged-chr19-5946272-3	chr19	5945762	5946762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	17944.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	230.54	187.08	138.74	170.03	143.68	147.09	135.19	128.23	68.07
Merged-chr2-181187809-3	chr2	181187315	181188315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151465, exon 2 of 4)	non-coding (NR_151465, exon 2 of 4)	568.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	192.21	195.37	181.29	222.66	234.65	215.42	266.16	256.46	159.88
Merged-chr4-31963956-3	chr4	31963472	31964472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172688)	promoter-TSS (NM_172688)	-135.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	180.77	205.51	171.12	175.43	191.27	120.57	201.73	189.69	119.91
Merged-chr8-3664621-3	chr8	3664123	3665123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1139.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	21.74	19.35	13.87	14.17	8.4	25.72	26.4	17.24	13.74
Merged-chr14-63124418-3	chr14	63123921	63124921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1959.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	215.66	246.52	130.42	293.5	259.38	206.57	292.56	345.77	187.98
Merged-chr2-6256972-3	chr2	6256477	6257477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43983.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	110.41	124.41	82.32	160.58	103.56	104.49	86.61	103.47	62.45
Merged-chr9-85569060-3	chr9	85568574	85569574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180260.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	50.91	56.68	24.05	53.98	44.78	73.14	49.64	45.54	37.47
Merged-chr8-39298665-2	chr8	39298163	39299163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 1 of 3)	intron (NR_044988, intron 1 of 3)	683.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	29.75	45.62	24.05	21.59	25.19	16.08	2.11	4.86	5.0
Merged-chr8-84966152-3	chr8	84965650	84966650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027187)	promoter-TSS (NM_027187)	-139.0	NM_027187	69724.0	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	16.02	11.52	15.72	14.17	14.0	30.54	22.18	29.18	24.36
Merged-chr7-118117694-3	chr7	118117188	118118188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-1541.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	60.07	66.35	49.95	62.07	28.92	64.3	82.38	81.8	48.71
Merged-chr19-55294257-3	chr19	55293749	55294749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027976, exon 19 of 22)	exon (NM_027976, exon 19 of 22)	21787.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	17.73	16.13	15.72	16.19	15.39	34.56	30.63	19.9	17.49
Merged-chr17-43036303-3	chr17	43035819	43036819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	19764.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	108.69	85.71	89.72	88.39	56.45	75.56	114.07	84.01	59.33
Merged-chr1-54870765-1	chr1	54870265	54871265	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	55622.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.29	1.84	13.87	9.45	4.67	3.22	4.22	3.1	7.49
Merged-chr4-141670465-3	chr4	141669967	141670967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6352.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	257.42	220.25	105.44	386.61	317.23	221.85	183.78	235.68	91.81
Merged-chr19-5490433-3	chr19	5489930	5490930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-25.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	124.71	101.83	107.29	100.53	59.25	98.06	98.23	127.79	98.05
Merged-chrUn_GL456389-10405-1	chrUn_GL456389	9905	10905	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	106.67	72.07	0.0
Merged-chr10-61715264-3	chr10	61714737	61715737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284300)	promoter-TSS (NM_001284300)	-26.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	10.87	8.29	5.55	14.17	9.8	8.04	5.28	10.61	5.62
Merged-chr15-93275355-3	chr15	93274831	93275831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-152.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	218.52	181.55	168.34	162.61	115.69	99.67	133.08	115.41	108.67
Merged-chr16-75855631-3	chr16	75855134	75856134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53632.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	92.1	87.55	47.17	159.23	84.44	90.02	126.74	130.88	63.08
Merged-chr8-69012788-3	chr8	69012304	69013304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75932.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	69.22	67.27	52.72	70.85	39.65	37.78	148.92	130.44	88.68
Merged-chr12-118994429-3	chr12	118993946	118994946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28025.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	8.01	5.07	1.85	8.1	4.67	6.43	2.11	6.63	5.0
Merged-chr12-112619973-3	chr12	112619483	112620483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-64.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	280.88	235.46	165.57	321.17	278.97	219.43	250.32	320.13	118.04
Merged-chr1-155059667-3	chr1	155059164	155060164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23600.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	60.07	34.1	29.6	43.18	25.66	61.09	47.53	26.53	38.1
Merged-chr2-26493123-3	chr2	26492629	26493629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10693.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	118.99	96.76	114.69	122.8	61.58	67.52	115.12	92.41	84.94
Merged-chr18-14657061-3	chr18	14656566	14657566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25848.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	199.07	260.34	157.24	188.92	189.4	138.25	247.15	303.77	133.02
Merged-chr9-123928243-3	chr9	123927771	123928771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40421.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	431.33	334.99	209.04	313.74	276.17	247.57	313.69	412.98	171.75
Merged-chr19-10949309-3	chr19	10948802	10949802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-36.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	266.0	212.88	135.97	209.84	202.93	160.76	196.45	218.87	118.04
Merged-chr6-116198099-3	chr6	116197600	116198600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	166.47	124.87	103.59	142.37	91.44	135.84	127.8	145.92	96.18
Merged-chr8-13671825-3	chr8	13671324	13672324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	5763.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	84.66	70.96	53.65	89.06	54.58	75.56	63.37	71.63	61.2
Merged-chr11-102407091-1	chr11	102406591	102407591	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026542, intron 1 of 11)	intron (NM_026542, intron 1 of 11)	426.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	104.11	82.02	81.4	178.13	98.43	100.47	163.71	128.23	74.94
Merged-chr7-43553317-3	chr7	43552810	43553810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-9060.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	22.31	19.35	11.1	14.84	10.26	11.25	13.73	8.84	8.74
Merged-chr17-7917394-3	chr17	7916884	7917884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8616.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	20.59	14.28	22.2	10.8	13.53	8.04	20.07	16.36	18.74
Merged-chr2-53191971-3	chr2	53191460	53192460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-124.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	223.1	177.86	198.87	224.68	192.67	245.16	235.53	188.81	145.51
Merged-chr6-97430496-3	chr6	97429989	97430989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	28797.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	206.51	185.24	101.74	214.56	167.94	153.52	197.51	213.57	96.8
Merged-chr3-30601366-3	chr3	30600860	30601860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030557)	promoter-TSS (NM_030557)	-727.0	NM_001289623	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	81.8	138.7	75.85	67.47	66.24	62.7	107.73	140.17	91.18
Merged-chr5-99375882-3	chr5	99375371	99376371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-122944.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	224.82	210.58	160.02	256.39	176.34	208.98	261.93	294.04	151.14
Merged-chr14-75284290-3	chr14	75283755	75284755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026083)	promoter-TSS (NM_026083)	-111.0	NM_001359875	67302.0	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	108.12	138.24	89.72	113.35	147.42	163.17	159.48	119.83	89.93
Merged-chr6-52713719-3	chr6	52713171	52714171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025816)	promoter-TSS (NM_025816)	-58.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	405.01	423.92	287.66	277.98	340.08	284.54	309.46	333.39	266.05
Merged-chr1-177131682-3	chr1	177131168	177132168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	117099.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	58.35	86.17	49.02	61.4	72.31	60.28	62.31	69.86	23.11
Merged-chr5-43786772-3	chr5	43786267	43787267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4618.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	28.6	33.18	22.2	43.86	23.79	45.82	24.29	26.53	24.36
Merged-chr16-36665984-3	chr16	36665488	36666488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019388)	promoter-TSS (NM_019388)	89.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	233.4	132.71	102.67	251.67	143.68	128.61	198.56	179.08	89.93
Merged-chr17-50471418-3	chr17	50470917	50471917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38130.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	135.58	132.25	100.82	114.03	96.1	87.61	137.3	108.77	101.8
Merged-chr13-41230487-3	chr13	41229983	41230983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-10080.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	18.31	8.29	5.55	12.82	11.66	29.74	8.45	5.31	9.37
Merged-chr11-29526348-3	chr11	29525842	29526842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133767)	promoter-TSS (NM_133767)	-55.0	NM_001282120	76784.0	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	67.5	65.89	58.27	56.68	60.18	55.46	42.25	56.16	47.46
Merged-chr10-81192682-3	chr10	81192172	81193172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007828, exon 8 of 8)	exon (NM_007828, exon 8 of 8)	-2019.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	77.23	54.37	77.7	75.57	57.38	79.58	77.1	58.81	51.21
Merged-chr2-103051379-1	chr2	103050879	103051879	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	22134.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	32.04	19.81	27.75	34.41	18.19	10.45	11.62	13.71	6.25
Merged-chr13-56178760-3	chr13	56178262	56179262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168615, exon 1 of 3)	5' UTR (NM_001168615, exon 1 of 3)	123.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	104.11	132.25	129.49	137.64	129.69	147.9	118.29	155.64	139.89
Merged-chrX-57393062-3	chrX	57392553	57393553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011252)	promoter-TSS (NM_011252)	-17.0	NM_001166623	19655.0	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	97.25	106.9	76.77	62.75	76.04	69.13	80.27	95.95	69.32
Merged-chr2-128429311-3	chr2	128428833	128429833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	18.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	379.84	469.08	248.81	303.62	299.5	247.57	317.91	489.92	223.58
Merged-chr7-101970248-3	chr7	101969867	101970867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133947, intron 1 of 24)	CpG	524.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	185.35	130.86	142.44	165.31	122.69	174.42	198.56	145.47	116.16
Merged-chr4-120926255-3	chr4	120925761	120926761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-1256.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	86.95	136.39	66.6	74.22	34.52	90.83	57.03	70.75	55.58
Merged-chr8-84856981-3	chr8	84856484	84857484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	-2.0	NR_152751	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	103.54	90.31	125.79	89.74	85.37	100.47	86.61	83.57	65.58
Merged-chr1-155098895-2	chr1	155098411	155099411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010500, exon 1 of 1)	exon (NM_010500, exon 1 of 1)	725.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	368.97	387.98	367.21	443.96	361.08	372.15	345.37	345.33	263.55
Merged-chr7-27179016-3	chr7	27178491	27179491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029391)	promoter-TSS (NM_029391)	-108.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	92.1	88.01	119.32	93.11	65.31	96.45	115.12	106.56	91.18
Merged-chr4-103114346-3	chr4	103113852	103114852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	-38.0	NM_027696	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	146.45	150.22	126.72	106.61	122.69	117.35	128.85	87.55	82.44
Merged-chr12-76537632-3	chr12	76537134	76538134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4074.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	145.87	131.78	98.05	125.5	109.63	124.59	153.15	187.48	109.29
Merged-chr11-17907044-3	chr11	17906545	17907545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46830.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	6.86	3.69	5.55	7.42	2.8	2.41	5.28	0.88	8.74
Merged-chr7-44986689-3	chr7	44986199	44987199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019830)	promoter-TSS (NM_019830)	-201.0	NR_045266	100502630.0	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	234.54	198.6	151.69	186.9	164.21	150.31	223.91	200.3	102.42
Merged-chr9-109931658-3	chr9	109931154	109932154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008633)	promoter-TSS (NM_008633)	-120.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	189.92	164.5	134.12	151.14	148.35	147.09	218.63	151.66	104.3
Merged-chr2-21205305-2	chr2	21204813	21205813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	52.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	141.3	98.61	42.55	109.3	58.31	42.6	74.99	61.9	38.72
Merged-chr8-124756891-2	chr8	124756380	124757380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5071.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	32.04	18.43	24.97	14.17	6.06	7.23	3.17	5.31	0.0
Merged-chr10-118052187-3	chr10	118051703	118052703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	340.37	281.54	137.82	300.92	285.5	193.71	283.06	360.81	169.25
Merged-chr17-17838342-3	chr17	17837837	17838837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162909, exon 8 of 9)	exon (NM_001162909, exon 8 of 9)	7362.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	342.09	265.87	183.14	370.42	274.31	222.65	261.93	207.38	144.89
Merged-chr7-144553784-3	chr7	144553259	144554259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033319)	promoter-TSS (NM_001033319)	-30.0	NM_001195086	233977.0	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	114.41	68.2	83.25	126.85	56.91	66.71	114.07	52.18	40.59
Merged-chr11-8443823-3	chr11	8443326	8444326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 27 of 30)	intron (NM_001083587, intron 27 of 30)	220709.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	9.15	12.9	7.4	18.89	7.93	24.92	7.39	5.75	6.25
Merged-chr4-121017259-3	chr4	121016740	121017740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133716)	promoter-TSS (NM_133716)	7.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	145.3	126.72	115.62	137.64	120.83	136.64	153.15	113.64	82.44
Merged-chr6-87916142-3	chr6	87915648	87916648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173737, intron 2 of 6)	intron (NM_173737, intron 2 of 6)	2172.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	52.06	43.31	13.87	48.58	45.25	28.94	38.02	32.28	14.99
Merged-chr7-24629009-3	chr7	24628492	24629492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001102613, exon 15 of 15)	3' UTR (NM_001102613, exon 15 of 15)	-7578.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	31.46	12.9	26.82	34.41	39.65	28.94	31.69	36.7	24.98
Merged-chr11-76243742-3	chr11	76243235	76244235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026029)	promoter-TSS (NM_026029)	-1.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	69.79	54.37	45.32	65.45	62.98	49.83	62.31	53.5	18.11
Merged-chr8-80948953-1	chr8	80948453	80949453	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65953.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	120.13	125.79	86.95	170.7	97.03	149.5	165.82	127.34	79.32
Merged-chr6-37732553-3	chr6	37732066	37733066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138245.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	23.45	16.13	5.55	16.19	15.86	25.72	40.14	47.75	21.23
Merged-chr15-78572785-3	chr15	78572276	78573276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	7.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	181.34	169.11	139.67	209.16	181.94	145.49	252.43	266.18	107.42
Merged-chr7-30121865-3	chr7	30121383	30122383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081007)	promoter-TSS (NM_001081007)	-49.0	NM_001081007	233060.0	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	4930428B01Rik|5930415A09Rik|KS1|Znf382	zinc finger protein 382	protein-coding	50.91	51.61	29.6	85.69	57.38	56.27	103.51	77.38	23.73
Merged-chr2-128731590-3	chr2	128731076	128732076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 2 of 18)	intron (NM_008587, intron 2 of 18)	32661.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	76.08	56.68	38.85	70.85	60.65	36.17	76.05	80.92	42.47
Merged-chr8-116733338-2	chr8	116732839	116733839	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029441)	promoter-TSS (NM_029441)	-348.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	26.31	12.44	22.2	18.22	8.4	14.47	43.3	5.31	15.61
Merged-chr9-58806126-3	chr9	58805619	58806619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17393.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	27.46	27.19	31.45	32.39	14.0	48.23	29.57	26.09	29.98
Merged-chr7-3290420-3	chr7	3289930	3290930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016969)	promoter-TSS (NM_016969)	-125.0	NM_016969	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	73.79	73.73	45.32	12.82	13.06	6.43	39.08	38.03	32.48
Merged-chr3-88177279-1	chr3	88176779	88177779	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045997, intron 1 of 2)	intron (NR_045997, intron 1 of 2)	506.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	278.02	187.54	125.79	309.7	215.99	180.85	276.72	280.78	129.28
Merged-chr11-106751187-3	chr11	106750698	106751698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271372)	promoter-TSS (NM_001271372)	-28.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	252.28	202.28	160.94	237.5	142.75	138.25	194.34	241.42	138.65
Merged-chr13-23762566-5	chr13	23762027	23763027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013550)	promoter-TSS (NM_013550)	-141.0	NM_013550	360198.0	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	225.39	184.77	130.42	168.0	153.48	129.41	157.37	215.78	119.91
Merged-chr6-28261962-3	chr6	28261448	28262448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-347.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	245.98	147.45	180.37	236.15	98.9	204.97	216.52	121.6	93.68
Merged-chr18-12643589-5	chr18	12643053	12644053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028341)	promoter-TSS (NM_028341)	20.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	62.93	33.64	58.27	28.34	24.26	14.47	86.61	70.75	49.34
Merged-chr2-166793761-3	chr2	166793266	166794266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023815)	promoter-TSS (NM_023815)	-1.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	35.47	41.93	35.15	66.8	55.98	61.09	64.43	44.22	36.22
Merged-chr19-59072052-3	chr19	59071545	59072545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4024.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	37.18	43.77	50.87	33.06	41.52	23.31	27.46	36.26	26.85
Merged-chr10-52419579-3	chr10	52419104	52420104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	2057.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	82.38	84.32	64.75	109.3	105.9	98.06	81.33	65.88	49.96
Merged-chr17-78916544-3	chr17	78916051	78917051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177402)	promoter-TSS (NM_001177402)	52.0	NM_001177402	68554.0	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	49.77	45.62	66.6	71.52	62.51	71.54	104.56	75.61	57.46
Merged-chr5-21517735-3	chr5	21517233	21518233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 17 of 20)	ORR1C1|LTR|ERVL-MaLR	-25794.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	29.75	27.19	14.8	33.06	19.13	25.72	38.02	50.85	26.23
Merged-chr12-25281636-3	chr12	25281152	25282152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	152478.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	88.67	84.78	61.97	96.48	51.32	63.5	81.33	79.59	57.46
Merged-chr9-113739124-3	chr9	113738614	113739614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	110.98	117.5	49.02	106.61	101.7	105.3	97.17	120.71	76.19
Merged-chr7-126898279-3	chr7	126897798	126898798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028389)	promoter-TSS (NM_028389)	-20.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	202.51	207.81	152.62	190.95	169.34	213.81	280.95	307.31	158.01
Merged-chr7-98703038-3	chr7	98702557	98703557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028410)	promoter-TSS (NM_028410)	-129.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	256.85	176.48	136.89	226.03	184.27	147.9	237.64	186.15	123.66
Merged-chr16-93810143-3	chr16	93809648	93810648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027293, exon 37 of 37)	exon (NM_027293, exon 37 of 37)	-15247.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	120.13	101.83	87.87	111.33	87.24	60.28	123.57	144.59	47.46
Merged-chr10-86704814-3	chr10	86704323	86705323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003939)	promoter-TSS (NM_001003939)	621.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	240.26	276.47	206.26	265.84	294.37	268.47	246.09	280.33	146.14
Merged-chr16-57902716-3	chr16	57902225	57903225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147988.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	22.88	23.96	32.37	16.19	15.86	20.09	11.62	12.82	13.74
Merged-chr11-21223759-3	chr11	21223262	21224262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15270.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	95.53	131.32	91.57	97.83	104.5	77.97	91.89	149.01	88.68
Merged-chr4-141444659-3	chr4	141444160	141445160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009541)	promoter-TSS (NM_009541)	-13.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	110.41	81.56	50.87	101.21	59.25	84.4	117.24	53.5	42.47
Merged-chr11-101665519-3	chr11	101665018	101666018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025404)	promoter-TSS (NM_025404)	-23.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	139.58	138.24	89.72	125.5	99.37	113.33	140.47	148.57	72.45
Merged-chr6-67069404-3	chr6	67068904	67069904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	Lx5|LINE|L1	-31997.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	9.72	10.14	1.85	7.42	9.33	8.04	15.84	5.75	5.0
Merged-chr16-43889766-3	chr16	43889284	43890284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356328)	promoter-TSS (NM_001356328)	-108.0	NM_001356328	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	131.0	147.45	78.62	101.88	108.7	75.56	85.55	117.62	44.97
Merged-chr8-117405453-3	chr8	117404973	117405973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	L1MB7|LINE|L1	-47550.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	86.95	58.52	63.82	83.66	62.05	70.73	97.17	87.99	30.6
Merged-chr16-44988798-3	chr16	44988281	44989281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	45103.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	10.3	10.14	11.1	26.31	21.93	11.25	8.45	4.42	11.24
Merged-chr1-173427567-3	chr1	173427049	173428049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	RMER19B|LTR|ERVK	6945.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	161.32	228.09	140.59	181.5	181.47	163.17	234.47	290.06	116.16
Merged-chr17-35823830-1	chr17	35823330	35824330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_133662)	TTS (NM_133662)	473.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	54.35	32.25	44.4	51.28	25.66	48.23	60.2	39.35	28.1
Merged-chr19-7482843-1	chr19	7482343	7483343	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003934, intron 1 of 8)	CpG	448.0	NM_001271486	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	196.21	160.35	167.42	145.06	135.29	127.0	151.03	136.19	126.15
Merged-chr7-12897776-3	chr7	12897284	12898284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001447)	promoter-TSS (NM_001001447)	-25.0	NM_001290438	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	77.23	80.64	22.2	88.39	66.71	35.37	58.09	66.33	31.23
Merged-chr1-180263641-3	chr1	180263156	180264156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-7356.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	64.07	58.06	33.3	45.88	34.99	53.05	53.87	46.43	33.72
Merged-chr8-85071679-3	chr8	85071174	85072174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039514)	promoter-TSS (NM_001039514)	-83.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	268.29	260.8	267.31	231.43	265.91	220.24	191.17	212.24	109.29
Merged-chr10-75837498-3	chr10	75837002	75838002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2621.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	225.96	170.49	102.67	196.34	144.62	135.84	192.23	195.88	94.3
Merged-chr4-142021415-3	chr4	142020908	142021908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	intron (NR_131014, intron 1 of 1)	3510.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	163.61	137.31	129.49	153.16	132.49	138.25	141.53	212.24	110.54
Merged-chr2-166713969-3	chr2	166713481	166714481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-149.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	278.59	170.03	163.72	256.39	150.68	206.57	233.42	235.23	105.55
Merged-chr2-127335465-3	chr2	127334956	127335956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-703.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	259.14	186.16	97.12	178.13	111.5	97.26	137.3	172.89	96.8
Merged-chr9-49051611-3	chr9	49051084	49052084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3997.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	58.35	62.67	48.1	76.24	61.58	65.11	19.01	14.59	12.49
Merged-chr5-137628085-3	chr5	137627614	137628614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1009.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	336.94	260.8	178.52	205.11	174.01	220.24	298.9	326.76	139.27
Merged-chr4-53440247-3	chr4	53439754	53440754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-159.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	89.24	50.23	42.55	118.75	43.39	56.27	106.67	54.39	33.1
Merged-chr2-29346740-3	chr2	29346232	29347232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026896)	promoter-TSS (NM_026896)	-78.0	NM_026896	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	40.04	36.4	37.92	26.99	39.19	31.35	47.53	38.03	9.99
Merged-chr13-23585994-3	chr13	23585509	23586509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-39.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	175.05	159.89	83.25	130.9	129.22	91.63	120.41	165.37	100.55
Merged-chr16-24151523-3	chr16	24151006	24152006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68816.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	5.72	4.15	10.17	9.45	7.46	4.82	6.34	8.84	3.75
Merged-chr15-12014288-3	chr15	12013778	12014778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-18271.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	40.04	28.11	11.1	28.34	16.33	5.63	8.45	11.5	8.12
Merged-chr9-88956919-3	chr9	88956435	88957435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009742)	promoter-TSS (NM_009742)	15.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	82.38	97.23	48.1	72.87	37.32	38.58	95.06	83.13	46.22
Merged-chr4-134513033-1	chr4	134512533	134513533	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081099, intron 1 of 2)	MURVY-LTR|LTR|ERV1	2034.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.0	0.0	0.92	0.0	0.47	1.61	8.45	2.65	6.25
Merged-chr11-117881134-3	chr11	117880643	117881643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	140.73	107.82	46.25	170.03	182.4	130.21	92.94	98.16	54.96
Merged-chr6-112739211-3	chr6	112738734	112739734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 16 of 21)	intron (NM_080448, intron 16 of 21)	-42564.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	93.24	80.18	100.82	76.92	56.45	52.25	76.05	78.71	52.46
Merged-chr13-113795207-4	chr13	113794625	113795625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	617.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	121.85	104.14	98.97	123.47	96.57	80.38	72.88	70.3	30.6
Merged-chr17-34971718-1	chr17	34971218	34972218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	438.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	34.9	23.04	7.4	34.41	26.12	22.51	22.18	21.22	9.99
Merged-chr12-4918283-3	chr12	4917791	4918791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362349, intron 1 of 27)	intron (NM_001362349, intron 1 of 27)	938.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	148.73	171.87	141.52	125.5	136.69	116.55	134.14	117.17	106.79
Merged-chr5-122779732-3	chr5	122779238	122780238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145358)	promoter-TSS (NM_145358)	-328.0	NM_145358	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	197.36	102.29	121.17	222.66	101.23	136.64	137.3	82.69	84.94
Merged-chr16-55907247-3	chr16	55906732	55907732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028815, intron 10 of 10)	intron (NM_028815, intron 10 of 10)	-11953.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	15.45	10.14	1.85	11.47	12.6	4.82	8.45	11.94	8.74
Merged-chr14-65150045-3	chr14	65149555	65150555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-51949.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	26.89	13.36	21.27	10.12	10.73	21.7	31.69	17.24	9.37
Merged-chr7-139247689-3	chr7	139247206	139248206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-776.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	259.71	287.53	258.06	219.96	284.1	269.27	247.15	292.71	227.33
Merged-chr8-107561365-3	chr8	107560868	107561868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10124.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	194.5	124.41	74.0	184.2	141.35	142.27	209.12	169.35	71.2
Merged-chr10-82764043-3	chr10	82763514	82764514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010914, exon 1 of 8)	5' UTR (NM_010914, exon 1 of 8)	127.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	85.24	58.06	91.57	70.17	32.19	57.07	88.72	28.3	51.21
Merged-chr10-117216297-3	chr10	117215827	117216827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	(TG)n|Simple_repeat|Simple_repeat	8180.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	192.21	224.4	123.02	167.33	199.2	190.5	168.99	264.86	114.29
Merged-chr11-119041092-3	chr11	119040599	119041599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013926)	promoter-TSS (NM_013926)	-186.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	102.97	77.87	46.25	109.98	66.24	68.32	86.61	68.98	45.59
Merged-chr16-90459221-3	chr16	90458720	90459720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	72823.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	27.46	20.27	15.72	23.62	8.4	11.25	6.34	8.4	7.49
Merged-chr17-26916967-3	chr17	26916479	26917479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053173)	promoter-TSS (NM_053173)	-112.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	54.92	32.72	17.57	35.76	28.46	32.96	30.63	17.24	27.48
Merged-chr1-74375545-2	chr1	74375037	74376037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013612, intron 1 of 14)	intron (NM_013612, intron 1 of 14)	334.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	409.02	367.24	332.98	456.78	337.29	331.16	405.58	483.29	239.19
Merged-chr17-63849728-3	chr17	63849233	63850233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14248.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	15.45	8.75	24.05	20.24	11.2	30.54	20.07	17.24	21.86
Merged-chr5-115237959-3	chr5	115237443	115238443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026398, exon 2 of 6)	5' UTR (NM_026398, exon 2 of 6)	2092.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	65.79	52.99	52.72	65.45	43.85	69.13	69.71	56.6	38.1
Merged-chr13-42528364-3	chr13	42527855	42528855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152444.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	187.63	243.75	88.8	147.09	99.37	71.54	189.06	225.95	85.56
Merged-chr3-87255452-1	chr3	87254952	87255952	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030707, intron 6 of 7)	B4A|SINE|B4	8072.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	7.44	2.76	1.85	6.75	2.8	3.22	1.06	1.77	1.87
Merged-chr6-99485346-3	chr6	99484853	99485853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35640.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	29.75	19.81	14.8	39.81	37.79	32.96	32.74	40.24	14.99
Merged-chr9-99140318-3	chr9	99139822	99140822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029094)	promoter-TSS (NM_029094)	-111.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	114.41	95.84	105.44	136.29	86.77	95.65	141.53	70.75	61.2
Merged-chr1-24471419-3	chr1	24470935	24471935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	116002.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	29.17	37.32	40.7	49.93	34.52	32.15	31.69	41.56	35.6
Merged-chr2-151542507-3	chr2	151542000	151543000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302078)	promoter-TSS (NM_001302078)	17.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	20.02	17.97	17.57	36.43	29.86	39.39	26.4	16.36	5.0
Merged-chr11-115707421-3	chr11	115706932	115707932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	1165.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	290.03	246.98	158.17	246.27	164.68	193.71	258.77	303.33	163.0
Merged-chr6-83115501-3	chr6	83114993	83115993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020619)	promoter-TSS (NM_020619)	-13.0	NM_020619	57377.0	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	172.76	124.41	93.42	145.74	99.83	77.97	147.87	108.33	62.45
Merged-chr14-18271146-3	chr14	18270641	18271641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316711)	promoter-TSS (NM_001316711)	5.0	NM_023526	69721.0	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	171.62	182.47	132.27	143.71	162.34	133.43	123.57	150.78	103.67
Merged-chr11-98774869-1	chr11	98774369	98775369	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145434, exon 1 of 8)	5' UTR (NM_145434, exon 1 of 8)	508.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	644.13	551.56	348.71	621.41	500.56	409.93	449.93	677.84	300.4
Merged-chr5-23850607-3	chr5	23850147	23851147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045040)	promoter-TSS (NR_045040)	50.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	147.02	141.0	104.52	45.88	55.51	34.56	116.18	122.92	87.43
Merged-chr6-120363931-3	chr6	120363450	120364450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-149.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	468.51	516.54	249.74	356.25	490.77	302.22	392.9	485.94	258.55
Merged-chr19-7494372-3	chr19	7493866	7494866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-72.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	384.42	394.43	274.71	363.67	382.54	319.91	328.47	359.48	227.33
Merged-chr8-123044160-3	chr8	123043652	123044652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	1577.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	113.27	128.56	51.8	106.61	98.9	74.75	52.81	84.45	57.46
Merged-chr5-136245401-3	chr5	136244895	136245895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-455.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	72.08	110.59	123.02	146.41	149.28	172.81	210.18	220.64	96.8
Merged-chrX-103622475-3	chrX	103621971	103622971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	intron (NR_028380, intron 1 of 10)	1283.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	65.79	101.83	63.82	76.24	80.71	60.28	81.33	92.41	49.34
Merged-chr9-108263917-3	chr9	108263427	108264427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276481)	promoter-TSS (NM_001276481)	31.0	NM_001276486	13138.0	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	77.8	45.16	46.25	89.06	64.84	50.64	54.92	42.45	35.6
Merged-chr5-24394433-4	chr5	24394002	24395002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029020, exon 1 of 16)	exon (NM_029020, exon 1 of 16)	346.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	103.54	89.85	65.67	103.91	73.24	100.47	149.98	111.87	77.44
Merged-chr1-180822468-3	chr1	180821960	180822960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8855.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	32.61	24.42	26.82	20.92	21.93	24.11	27.46	30.95	13.74
Merged-chr17-88511478-3	chr17	88510983	88511983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18641.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.86	3.23	0.0	4.72	3.73	8.04	6.34	3.98	1.87
Merged-chr5-33274684-3	chr5	33274186	33275186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	CpG	318.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	231.11	176.48	146.14	198.37	141.35	132.63	199.62	159.62	111.17
Merged-chr18-69593353-3	chr18	69592850	69593850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	247190.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	85.24	110.13	81.4	98.51	84.9	90.02	127.8	142.82	96.18
Merged-chr8-40511850-3	chr8	40511388	40512388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	105.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	747.67	619.75	459.7	637.61	649.38	386.62	510.14	485.94	256.06
Merged-chr5-53267121-3	chr5	53266621	53267621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145433)	promoter-TSS (NM_001145433)	15.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	67.5	67.27	46.25	80.97	85.37	65.91	103.51	73.84	46.22
Merged-chr16-4489274-3	chr16	4488786	4489786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361474, intron 3 of 5)	intron (NM_001361474, intron 3 of 5)	33789.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	7.44	6.45	3.7	5.4	5.6	6.43	4.22	2.65	3.12
Merged-chr1-170215347-3	chr1	170214860	170215860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360809)	promoter-TSS (NM_001360809)	47.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	149.31	120.26	84.17	141.02	78.37	84.4	119.35	57.04	39.97
Merged-chr7-100499930-2	chr7	100499414	100500414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011671)	TTS (NM_011671)	6556.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	62.35	40.55	35.15	46.56	35.45	39.39	51.75	44.66	44.97
Merged-chr19-10018203-3	chr19	10017695	10018695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347430)	promoter-TSS (NM_001347430)	1.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	37.76	30.87	37.0	38.46	21.93	30.54	45.42	38.03	21.23
Merged-chr10-94093575-1	chr10	94093075	94094075	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	PB1D10|SINE|Alu	-54356.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	8.01	20.27	3.7	8.1	8.86	3.22	73.93	83.13	47.46
Merged-chr8-123805964-2	chr8	123805467	123806467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009003)	promoter-TSS (NM_009003)	-29.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	20.02	13.36	22.2	26.31	18.19	32.15	3.17	1.33	2.5
Merged-chr8-79159583-3	chr8	79159059	79160059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	MLT1J|LTR|ERVL-MaLR	89024.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	30.89	8.75	9.25	28.34	20.06	16.88	24.29	16.8	5.0
Merged-chr5-143112629-2	chr5	143112128	143113128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080561, intron 1 of 16)	CpG	392.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	155.6	111.05	151.69	133.59	67.64	107.71	136.25	69.86	81.19
Merged-chr4-53218261-3	chr4	53217760	53218760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27936.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	219.1	164.5	113.77	271.91	187.54	160.76	177.44	155.2	91.18
Merged-chr4-62661717-3	chr4	62661221	62662221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-12253.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	40.62	26.26	23.12	41.83	15.39	19.29	47.53	19.9	37.47
Merged-chr16-94632119-3	chr16	94631614	94632614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	20695.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	9.15	8.75	5.55	12.14	8.4	3.22	9.51	9.29	13.12
Merged-chr2-120540040-3	chr2	120539543	120540543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 3 of 21)	intron (NM_011743, intron 3 of 21)	23816.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	58.92	75.57	66.6	63.42	50.38	58.68	59.15	89.76	65.58
Merged-chr12-16894783-5	chr12	16894259	16895259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-219.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	410.73	314.72	351.48	424.4	310.23	303.83	382.34	284.31	206.09
Merged-chr5-139150089-3	chr5	139149574	139150574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	-73.0	NM_001359098	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	29.17	17.97	40.7	17.54	14.93	30.54	35.91	16.8	23.11
Merged-chr14-73441354-3	chr14	73440858	73441858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56069.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	85.24	68.2	73.07	74.89	47.12	65.91	55.98	71.63	63.7
Merged-chr5-122281363-3	chr5	122280865	122281865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3033.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	66.36	47.92	25.9	66.8	49.92	53.85	62.31	47.31	21.86
Merged-chr8-78508894-3	chr8	78508406	78509406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	22.0	NM_001252089	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	401.01	503.64	283.04	351.53	430.59	293.38	378.11	401.49	186.73
Merged-chrUn_JH584304-40700-1	chrUn_JH584304	40200	41200	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18989.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	35.91	22.99	0.0
Merged-chr18-46378772-3	chr18	46378282	46379282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66854.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	18.88	14.75	24.05	39.81	27.52	32.96	35.91	32.28	24.98
Merged-chr10-117072519-3	chr10	117072015	117073015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177798, exon 10 of 10)	3' UTR (NM_177798, exon 10 of 10)	-8663.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	38.33	34.56	27.75	55.33	44.78	32.15	30.63	32.72	17.49
Merged-chr2-34372813-3	chr2	34372318	34373318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-773.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	36.61	34.1	37.92	46.56	29.39	45.82	66.54	26.09	28.73
Merged-chr16-43966014-3	chr16	43965502	43966502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13048.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	112.69	128.56	90.65	102.56	98.43	77.16	57.03	77.38	54.33
Merged-chr8-70659746-3	chr8	70659185	70660185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	53.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	161.89	76.03	88.8	116.05	82.57	93.24	156.32	108.33	59.95
Merged-chr19-4192030-3	chr19	4191535	4192535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031868)	promoter-TSS (NM_031868)	-139.0	NM_031868	19045.0	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	122.42	72.34	74.92	79.62	73.24	53.05	82.38	93.3	72.45
Merged-chr3-104992882-3	chr3	104992381	104993381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31172.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	27.46	12.9	5.55	21.59	9.8	13.66	9.51	7.07	11.87
Merged-chr1-148903318-3	chr1	148902821	148903821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1019118.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	80.09	79.25	33.3	80.29	59.71	69.13	85.55	82.69	41.84
Merged-chr8-20297021-3	chr8	20296538	20297538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030708, intron 1 of 4)	CpG	394.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	57.21	56.68	28.67	55.33	48.05	58.68	49.64	36.7	44.34
Merged-chr8-92853306-3	chr8	92852807	92853807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008610, exon 13 of 13)	3' UTR (NM_008610, exon 13 of 13)	-2026.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	159.6	179.25	183.14	155.19	120.83	152.72	161.6	180.4	117.41
Merged-chr15-97174779-1	chr15	97174279	97175279	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7535.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	66.36	47.0	75.85	74.89	69.04	117.35	73.93	57.92	57.46
Merged-chr16-44778933-3	chr16	44778437	44779437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	13201.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	164.75	181.55	72.15	186.22	202.46	124.59	158.43	170.23	84.94
Merged-chr1-105742644-3	chr1	105742154	105743154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 24 of 28)	intron (NM_173187, intron 24 of 28)	-38069.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	23.45	22.58	27.75	25.64	24.26	30.54	26.4	32.72	28.73
Merged-chr13-23576165-2	chr13	23575665	23576665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178204, exon 1 of 1)	exon (NM_178204, exon 1 of 1)	402.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	90.96	62.21	87.87	82.99	43.85	72.34	79.21	91.53	76.19
Merged-chr14-75011187-3	chr14	75010684	75011684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-4843.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	62.93	45.62	39.77	73.54	48.52	49.83	63.37	47.31	38.72
Merged-chr10-118052553-3	chr10	118052035	118053035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89252.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	572.63	482.9	241.41	572.16	514.56	345.63	425.64	576.14	251.06
Merged-chr11-3147041-2	chr11	3146538	3147538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B3|SINE|B2	23017.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	52.63	81.1	108.22	72.87	105.9	167.19	1.06	1.77	112.42
Merged-chr11-75587673-3	chr11	75587192	75588192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	-387.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	302.62	248.36	170.19	240.2	156.75	177.64	157.37	218.43	114.29
Merged-chr14-105288727-3	chr14	105288241	105289241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	30068.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	42.33	25.8	12.95	31.71	12.13	27.33	43.3	16.8	18.74
Merged-chr1-156442268-3	chr1	156441767	156442767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 6 of 15)	intron (NM_009230, intron 6 of 15)	-21352.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	45.19	46.08	45.32	45.21	38.25	62.7	66.54	59.69	58.08
Merged-chr9-53705713-4	chr9	53705171	53706171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	CpG	561.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	135.58	166.34	119.32	140.34	112.43	169.6	171.1	192.78	129.9
Merged-chr11-59839822-3	chr11	59839322	59840322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011991)	promoter-TSS (NM_011991)	-55.0	NM_011991	26572.0	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	152.17	193.99	152.62	140.34	144.15	191.3	183.78	175.1	119.28
Merged-chr15-98762302-3	chr15	98761817	98762817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	675.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	162.46	107.82	144.29	109.98	69.51	120.57	122.52	111.87	113.04
Merged-chr10-19014252-1	chr10	19013752	19014752	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	1158.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	176.76	179.71	108.22	151.81	75.11	65.91	165.82	161.39	109.29
Merged-chr7-44748455-3	chr7	44747968	44748968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133945)	promoter-TSS (NM_133945)	-77.0	NM_001289839	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	120.7	167.26	92.5	105.26	107.76	110.12	111.96	125.13	58.71
Merged-chr13-85553295-3	chr13	85552798	85553798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-263812.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	40.04	39.17	31.45	48.58	33.59	30.54	48.58	51.73	33.1
Merged-chr10-117910632-3	chr10	117910128	117911128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-14831.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	252.28	143.76	87.87	224.01	137.62	73.95	183.78	201.19	65.58
Merged-chr12-55474375-1	chr12	55473875	55474875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18272.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	187.06	174.18	123.02	275.96	220.66	184.87	176.38	250.71	115.54
Merged-chr1-36065034-3	chr1	36064536	36065536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3364.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	44.62	45.16	18.5	51.28	34.99	29.74	53.87	46.43	19.36
Merged-chr8-14890121-3	chr8	14889609	14890609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	1573.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	364.97	372.31	235.86	334.66	374.14	220.24	326.36	474.0	227.33
Merged-chr6-136938869-3	chr6	136938371	136939371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	656.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	66.93	88.93	80.47	66.12	49.92	73.14	132.02	141.05	68.07
Merged-chr1-54926409-3	chr1	54925896	54926896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081433)	promoter-TSS (NM_001081433)	-9.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	227.11	176.02	104.52	190.27	155.35	167.19	110.9	91.53	70.57
Merged-chr2-157566794-3	chr2	157566281	157567281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016916)	promoter-TSS (NM_016916)	-420.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	419.89	393.97	249.74	481.07	448.78	340.81	458.38	572.61	213.59
Merged-chr17-27056383-3	chr17	27055863	27056863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-941.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	94.39	92.16	86.95	97.83	68.58	99.67	62.31	75.61	41.22
Merged-chr4-43972348-3	chr4	43971841	43972841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-11163.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	52.63	42.39	30.52	24.96	14.0	15.27	33.8	20.34	27.48
Merged-chr6-97441636-3	chr6	97441128	97442128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	17658.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	206.51	194.45	171.12	217.93	197.8	163.17	233.42	241.42	104.3
Merged-chr3-84827952-3	chr3	84827452	84828452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	12375.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	49.2	58.06	49.95	43.86	49.45	36.17	45.42	48.64	23.73
Merged-chr6-52011767-3	chr6	52011268	52012268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	781.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	74.37	68.66	91.57	80.97	68.58	139.06	98.23	114.08	79.94
Merged-chr17-86677546-2	chr17	86677031	86678031	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-76333.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.58	5.07	0.0	49.25	37.79	28.94	13.73	6.63	0.0
Merged-chr8-109694077-3	chr8	109693572	109694572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-778.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	213.38	195.37	136.89	219.96	194.53	167.19	199.62	214.45	158.63
Merged-chr1-191817988-3	chr1	191817500	191818500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3473.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	7.44	4.61	1.85	4.05	2.33	1.61	4.22	1.77	3.12
Merged-chr6-29524336-3	chr6	29523832	29524832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2293.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	388.42	358.49	250.66	361.65	249.58	244.35	264.05	342.24	181.11
Merged-chr15-78258442-3	chr15	78257945	78258945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 7 of 9)	intron (NM_008677, intron 7 of 9)	13634.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	394.14	367.71	244.19	371.09	306.5	247.57	328.47	372.3	198.6
Merged-chr5-139484564-3	chr5	139484067	139485067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159908)	promoter-TSS (NM_001159908)	-76.0	NM_001159908	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	248.27	208.74	135.04	232.1	269.18	170.4	217.57	237.44	123.03
Merged-chr16-91931626-3	chr16	91931130	91932130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138597)	promoter-TSS (NM_138597)	0.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	176.19	205.05	109.14	184.87	191.27	115.75	205.96	252.04	103.67
Merged-chr5-135149507-3	chr5	135149006	135150006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013763)	promoter-TSS (NM_013763)	-205.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	140.15	133.17	146.14	136.29	128.76	121.37	192.23	183.94	108.04
Merged-chr11-80146070-3	chr11	80145579	80146579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3926.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	355.25	276.01	128.57	329.26	222.52	171.21	273.55	309.96	119.91
Merged-chr2-163658487-3	chr2	163657989	163658989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164053)	promoter-TSS (NM_001164053)	31.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	68.07	71.42	56.42	68.15	57.38	47.42	53.87	50.85	30.6
Merged-chr6-57824807-5	chr6	57824309	57825309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	CpG	316.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	242.55	252.51	160.94	246.95	241.65	196.93	220.74	196.32	154.26
Merged-chr8-20424841-3	chr8	20424328	20425328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028428)	promoter-TSS (NR_028428)	-14.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	29.75	23.04	7.4	35.76	27.52	12.06	39.08	22.99	11.24
Merged-chr6-31078593-3	chr6	31078085	31079085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15492.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	129.86	87.55	77.7	188.92	102.17	117.35	146.81	140.61	91.81
Merged-chr2-33353627-3	chr2	33353123	33354123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	17871.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	14.87	6.91	10.17	22.27	7.46	13.66	6.34	10.61	0.0
Merged-chr12-33303128-3	chr12	33302624	33303624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	609.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	394.72	413.32	235.86	296.2	350.35	196.12	326.36	455.43	159.25
Merged-chr1-192770689-3	chr1	192770200	192771200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 1 of 11)	CpG	519.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	153.31	133.63	139.67	124.15	75.11	79.58	152.09	128.67	61.2
Merged-chr18-61486803-3	chr18	61486303	61487303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2196.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	38.9	36.4	29.6	41.16	39.19	24.92	24.29	17.24	8.74
Merged-chr14-34296552-3	chr14	34296054	34297054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13963.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	31.46	83.86	59.2	26.99	48.05	57.87	53.87	64.56	42.47
Merged-chr15-88864023-3	chr15	88863540	88864540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145478, intron 4 of 5)	intron (NM_145478, intron 4 of 5)	1846.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	209.94	132.25	97.12	207.81	110.1	127.8	98.23	80.47	48.71
Merged-chr1-43827928-3	chr1	43827419	43828419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026430)	promoter-TSS (NM_026430)	-211.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	92.1	94.92	74.0	82.99	84.44	79.58	85.55	60.58	55.58
Merged-chr5-142821792-3	chr5	142821292	142822292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4405.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	53.77	59.9	39.77	59.38	47.12	67.52	60.2	59.25	57.46
Merged-chr4-126251896-3	chr4	126251392	126252392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	4427.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	90.38	68.66	85.1	75.57	55.05	61.89	85.55	98.6	68.7
Merged-chr7-110003212-3	chr7	110002686	110003686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037959, intron 2 of 2)	intron (NR_037959, intron 2 of 2)	3460.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	50.91	77.41	41.62	76.24	65.31	73.14	55.98	80.92	73.07
Merged-chr5-100039961-3	chr5	100039465	100040465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026421)	promoter-TSS (NM_026421)	-29.0	NM_026421	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	231.11	226.71	198.87	255.04	261.71	241.94	252.43	219.31	137.4
Merged-chr7-69985365-2	chr7	69984874	69985874	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	352448.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	8.01	7.37	5.55	10.8	20.06	34.56	31.69	29.63	27.48
Merged-chr11-121236772-1	chr11	121236272	121237272	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-464.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	212.23	202.75	142.44	168.68	147.42	142.27	181.66	181.29	128.03
Merged-chr7-90043654-3	chr7	90043175	90044175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	14516.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	100.68	91.7	77.7	132.24	106.83	109.32	122.52	160.51	61.2
Merged-chr11-6476141-3	chr11	6475645	6476645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-69.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	247.7	246.06	225.69	197.69	192.2	155.13	211.24	222.85	108.04
Merged-chr2-73397120-3	chr2	73396626	73397626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10646.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	26.89	25.8	15.72	28.34	20.99	13.66	28.52	29.18	18.74
Merged-chr4-148164244-3	chr4	148163743	148164743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176848, exon 2 of 6)	exon (NM_176848, exon 2 of 6)	3575.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	9.15	2.76	0.0	4.05	4.2	5.63	1.06	4.42	5.0
Merged-chr15-7931791-1	chr15	7931291	7932291	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	116241.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	2.86	3.69	1.85	8.77	3.27	6.43	2.11	3.98	2.5
Merged-chr16-29945455-3	chr16	29944823	29945823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33801.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	140.15	131.32	101.74	125.5	94.7	133.43	160.54	114.52	78.69
Merged-chr15-97825205-3	chr15	97824698	97825698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	6569.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	171.04	132.71	85.1	152.49	109.63	134.23	70.76	61.02	29.98
Merged-chr10-69252946-3	chr10	69252452	69253452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39758.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	110.98	130.4	111.92	109.3	73.24	95.65	95.06	131.32	93.68
Merged-chr7-114316598-3	chr7	114316106	114317106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-40490.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	32.04	40.09	27.75	46.56	49.92	49.03	28.52	22.55	22.48
Merged-chr9-58269548-3	chr9	58269037	58270037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16373.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	45.19	37.32	24.97	45.21	38.72	48.23	70.76	65.88	33.72
Merged-chr13-117034021-5	chr13	117033512	117034512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8496.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	84.66	93.54	87.87	76.92	44.78	65.91	73.93	73.84	54.33
Merged-chr10-68239847-3	chr10	68239349	68240349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	38877.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	291.75	258.5	216.44	305.65	207.6	282.13	362.27	443.49	194.23
Merged-chr5-44226656-3	chr5	44226163	44227163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-57.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	223.1	102.29	110.07	190.95	87.7	115.75	191.17	64.11	58.08
Merged-chr4-129624456-3	chr4	129623934	129624934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-526.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	149.31	152.52	123.02	131.57	100.77	120.57	147.87	190.57	96.8
Merged-chr5-121838829-3	chr5	121838348	121839348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1989.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	378.13	320.71	237.71	364.35	312.09	268.47	238.7	299.79	196.1
Merged-chr5-90999772-1	chr5	90999272	91000272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27745.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	12.59	14.28	31.45	18.89	8.4	11.25	9.51	8.4	16.24
Merged-chr2-167375320-3	chr2	167374789	167375789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26111.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	175.05	83.86	51.8	192.29	104.03	110.92	120.41	98.6	38.1
Merged-chrX-21567755-3	chrX	21567262	21568262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83138.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	149.31	143.76	71.22	130.9	128.29	115.75	121.46	140.17	57.46
Merged-chr4-136239856-3	chr4	136239339	136240339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008232, intron 17 of 24)	intron (NM_001008232, intron 17 of 24)	-8118.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	17.73	10.6	0.0	9.45	8.4	19.29	9.51	6.63	15.61
Merged-chr12-98283698-3	chr12	98283183	98284183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15048.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	110.41	109.67	62.9	118.75	87.7	137.45	109.84	119.39	88.68
Merged-chr14-69136045-3	chr14	69135537	69136537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35765.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	17.16	13.36	11.1	13.49	9.33	9.65	12.67	7.52	17.49
Merged-chr15-64075846-3	chr15	64075321	64076321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15373.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	93.82	96.3	46.25	89.74	71.38	84.4	83.44	102.58	53.08
Merged-chr9-21852645-3	chr9	21852132	21853132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177030)	promoter-TSS (NM_177030)	3.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	30.89	8.75	3.7	22.27	23.79	28.13	17.96	8.4	5.0
Merged-chr10-77522156-3	chr10	77521652	77522652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6339.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	110.41	76.03	89.72	72.87	64.38	128.61	121.46	107.45	60.58
Merged-chr13-56611971-3	chr13	56611475	56612475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	2389.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	144.16	190.3	99.89	124.82	144.15	107.71	174.27	220.64	84.31
Merged-chrX-71287320-3	chrX	71286808	71287808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 9 of 15)	intron (NM_001358113, intron 9 of 15)	72234.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	44.05	47.0	23.12	47.9	36.39	24.11	39.08	36.26	14.99
Merged-chr4-66793612-3	chr4	66793107	66794107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-33944.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	20.02	13.82	12.95	12.14	7.93	3.22	11.62	8.4	6.25
Merged-chr10-7725975-3	chr10	7725475	7726475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011835)	promoter-TSS (NM_011835)	-25.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	143.01	124.87	95.27	101.88	98.9	110.12	129.91	106.56	78.07
Merged-chr5-52476412-3	chr5	52475913	52476913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4870.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	7.44	11.06	3.7	14.17	7.93	18.49	9.51	9.29	5.0
Merged-chr2-143081913-3	chr2	143081397	143082397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020595)	TTS (NM_020595)	3504.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	50.91	50.23	24.05	39.81	31.72	37.78	42.25	33.16	24.98
Merged-chr13-111805230-4	chr13	111804743	111805743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3750.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	243.69	211.5	128.57	283.38	231.85	180.85	236.59	271.49	140.52
Merged-chr3-95662089-3	chr3	95661574	95662574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	3353.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	183.06	185.7	98.05	174.08	87.24	71.54	188.0	196.76	69.95
Merged-chr8-126890830-3	chr8	126890320	126891320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41800.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	10.87	3.69	9.25	18.22	6.06	13.66	13.73	8.84	11.24
Merged-chr12-76962364-3	chr12	76961847	76962847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146176)	promoter-TSS (NM_001146176)	-99.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	220.81	164.96	127.64	183.52	180.54	189.69	214.41	183.94	109.92
Merged-chr8-25597576-3	chr8	25597087	25598087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173012)	promoter-TSS (NM_173012)	-100.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	534.87	435.44	365.36	470.28	354.08	360.1	380.23	434.65	237.95
Merged-chr2-26483736-3	chr2	26483214	26484214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13595.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	314.63	263.57	160.94	269.89	197.8	173.62	198.56	221.08	106.17
Merged-chr2-160237010-3	chr2	160236501	160237501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90493.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	72.65	76.49	62.9	91.09	65.31	90.02	79.21	98.16	64.33
Merged-chr11-30954412-3	chr11	30953910	30954910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025745)	promoter-TSS (NM_025745)	12.0	NM_023906	65257.0	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	82.95	53.91	46.25	82.32	41.99	50.64	69.71	49.96	30.6
Merged-chr4-133918581-1	chr4	133918081	133919081	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10-int|LTR|ERVK	-30784.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.0	0.0	1.85	0.67	0.0	3.22	26.4	14.15	30.6
Merged-chr10-60832109-1	chr10	60831609	60832609	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	-528.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	31.46	20.74	7.4	41.83	18.66	27.33	25.35	14.59	16.24
Merged-chr17-26663113-3	chr17	26662591	26663591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13305.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	77.23	92.62	53.65	86.36	80.71	87.61	95.06	101.26	68.7
Merged-chr2-167771769-3	chr2	167771266	167772266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80589.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	68.65	51.61	44.4	90.41	49.92	77.97	146.81	109.22	53.71
Merged-chr7-30231890-3	chr7	30231407	30232407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027259)	promoter-TSS (NM_027259)	-167.0	NM_027259	69920.0	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	59.49	48.84	56.42	45.88	47.58	83.59	73.93	49.52	25.61
Merged-chr19-4000308-3	chr19	3999843	4000843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025529)	promoter-TSS (NM_025529)	-237.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	90.38	69.58	108.22	103.23	69.51	132.63	113.01	73.84	69.95
Merged-chr1-92216388-3	chr1	92215880	92216880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-36039.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	106.97	109.21	110.99	114.03	78.84	108.51	116.18	137.07	80.56
Merged-chr13-45031041-3	chr13	45030557	45031557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28961.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	104.69	77.41	50.87	113.35	83.97	59.48	73.93	84.9	16.86
Merged-chr2-6459802-3	chr2	6459296	6460296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107060.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	46.34	28.57	12.95	56.0	28.46	17.68	61.26	30.51	21.86
Merged-chr4-43044064-3	chr4	43043551	43044551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	2169.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	109.83	77.41	72.15	65.45	70.44	81.99	82.38	82.69	71.82
Merged-chr16-37868917-1	chr16	37868417	37869417	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177093, exon 1 of 4)	exon (NM_177093, exon 1 of 4)	517.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	359.25	394.43	324.66	331.29	314.89	296.6	405.58	295.81	235.45
Merged-chr9-75411687-1	chr9	75411187	75412187	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040719, intron 1 of 3)	MER110A|LTR|ERV1	1503.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	21.17	3.23	4.62	18.22	6.06	8.04	35.91	37.58	14.36
Merged-chr4-43959880-3	chr4	43959382	43960382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	2180.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	82.38	67.74	61.97	54.65	27.52	28.13	68.65	76.49	44.34
Merged-chr4-21847581-3	chr4	21847079	21848079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025669)	promoter-TSS (NM_025669)	-4.0	NM_025669	66625.0	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	194.5	229.01	131.34	188.25	234.65	161.56	183.78	238.77	104.3
Merged-chr12-87200301-3	chr12	87199815	87200815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290288)	promoter-TSS (NM_001290288)	-86.0	NM_001033475	382620.0	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	57.21	45.62	43.47	42.51	16.33	16.88	43.3	18.57	13.12
Merged-chr13-74617666-5	chr13	74617186	74618186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22167.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	39.47	46.54	49.95	53.3	45.72	63.5	58.09	70.75	48.71
Merged-chr6-34878148-3	chr6	34877642	34878642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347101)	promoter-TSS (NM_001347101)	-77.0	NM_001135611	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	152.17	126.72	142.44	151.81	139.95	113.33	142.59	137.96	74.32
Merged-chr13-60683466-3	chr13	60682940	60683940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	81229.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	147.02	130.86	98.97	131.57	82.57	118.96	178.5	206.93	96.8
Merged-chr6-84017609-3	chr6	84017135	84018135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-1751.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	16.59	18.89	12.95	17.54	13.06	14.47	22.18	15.03	14.99
Merged-chr16-11385982-3	chr16	11385501	11386501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 4 of 20)	intron (NM_028964, intron 4 of 20)	-19647.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	46.91	48.84	38.85	68.15	49.92	58.68	42.25	39.35	36.85
Merged-chr6-47595113-3	chr6	47594613	47595613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-83.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	217.38	161.74	174.82	250.99	197.33	151.92	230.25	157.85	114.91
Merged-chr1-9857763-3	chr1	9857279	9858279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	RMER13B|LTR|ERVK	9498.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	28.03	18.43	36.07	24.96	19.13	30.54	30.63	23.88	21.23
Merged-chr11-34036512-3	chr11	34035993	34036993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-10435.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	17.16	10.14	14.8	21.59	7.93	16.88	23.24	15.48	9.99
Merged-chr10-39369673-3	chr10	39369162	39370162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122892)	promoter-TSS (NM_001122892)	-137.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	42.33	23.5	21.27	81.64	38.72	46.62	47.53	26.09	11.24
Merged-chr8-84893897-3	chr8	84893386	84894386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008097)	promoter-TSS (NM_008097)	35.0	NM_001044744	270076.0	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	18.31	7.37	7.4	17.54	15.39	12.86	13.73	9.29	11.24
Merged-chr1-131252772-3	chr1	131252294	131253294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7616.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	96.11	59.9	59.2	47.9	23.79	43.4	73.93	70.3	61.2
Merged-chr16-95929794-3	chr16	95929321	95930321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040484)	promoter-TSS (NR_040484)	-744.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	11.44	9.68	5.55	10.8	9.33	11.25	11.62	7.96	18.74
Merged-chr12-70946813-3	chr12	70946301	70947301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019785, intron 4 of 12)	intron (NM_019785, intron 4 of 12)	8944.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	88.67	94.92	58.27	130.9	87.7	99.67	164.76	159.62	66.82
Merged-chr12-99393102-3	chr12	99392599	99393599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	CpG	56975.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	257.42	180.63	141.52	250.32	151.62	131.02	172.16	129.11	104.92
Merged-chr12-80938840-3	chr12	80938338	80939338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6561.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	229.97	240.99	161.87	163.96	179.61	136.64	224.97	282.54	131.15
Merged-chr17-47502198-3	chr17	47501730	47502730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	61.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	197.36	186.16	149.84	211.86	139.02	131.82	219.69	186.15	126.15
Merged-chr8-95037203-3	chr8	95036713	95037713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173036, intron 8 of 11)	intron (NM_173036, intron 8 of 11)	-17890.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	20.59	20.74	19.42	54.65	38.72	43.4	69.71	50.41	41.22
Merged-chr7-110630396-3	chr7	110629890	110630890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009627)	TTS (NM_009627)	2733.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	8.58	6.91	3.7	18.89	7.93	8.84	9.51	15.92	13.74
Merged-chr9-65575539-3	chr9	65575042	65576042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	MIR|SINE|MIR	4545.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	189.92	160.35	119.32	215.23	122.23	154.33	207.01	189.25	123.66
Merged-chr9-41179249-3	chr9	41178738	41179738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21176.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	10.3	9.68	3.7	16.19	12.13	6.43	9.51	3.98	10.62
Merged-chr4-101354607-3	chr4	101354115	101355115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	832.0	NR_040640	68400.0	Mm.272098	NR_040640	ENSMUSG00000087361	0610043K17Rik	-	RIKEN cDNA 0610043K17 gene	ncRNA	163.61	158.97	83.25	150.46	143.68	78.77	114.07	136.19	84.94
Merged-chr6-39527472-3	chr6	39526965	39527965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30369.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	167.61	145.15	89.72	184.87	184.74	122.98	243.98	254.69	94.93
Merged-chr1-191894582-3	chr1	191894068	191895068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030669, exon 5 of 5)	non-coding (NR_030669, exon 5 of 5)	-12213.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	42.9	29.49	22.2	39.13	40.12	26.53	49.64	30.51	11.87
Merged-chr9-20878299-3	chr9	20877795	20878795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1415.0	NM_145154	70726.0	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	97.82	91.7	72.15	103.91	109.63	102.88	115.12	115.41	58.71
Merged-chr11-29515081-3	chr11	29514580	29515580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026465)	promoter-TSS (NM_026465)	-47.0	NM_001163454	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	275.16	317.94	203.49	109.98	114.76	91.63	124.63	128.67	62.45
Merged-chr11-107470764-3	chr11	107470250	107471250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-30.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	209.94	213.8	163.72	228.05	206.2	225.06	230.25	269.72	145.51
Merged-chr15-59739340-3	chr15	59738821	59739821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55638.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	13.73	20.27	1.85	29.01	20.53	9.65	30.63	18.57	15.61
Merged-chr19-5295533-3	chr19	5295044	5296044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030109)	promoter-TSS (NM_030109)	-89.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	100.68	72.8	61.05	82.32	107.3	66.71	73.93	65.88	46.22
Merged-chr16-8674367-3	chr16	8673859	8674859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2206.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	6.86	2.3	0.0	2.02	2.8	1.61	4.22	4.86	5.0
Merged-chr11-90235424-3	chr11	90234914	90235914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14062.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	144.73	106.9	82.32	152.49	93.3	138.25	122.52	111.87	43.09
Merged-chr13-24103338-3	chr13	24102839	24103839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	intron (NM_026825, intron 17 of 37)	-112125.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	29.75	27.65	27.75	37.11	28.92	36.97	35.91	19.01	29.98
Merged-chr4-134767985-3	chr4	134767470	134768470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145554)	promoter-TSS (NM_145554)	34.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	87.52	63.13	110.07	91.76	90.97	87.61	103.51	88.88	61.2
Merged-chr2-31239327-3	chr2	31238825	31239825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6598.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	22.31	11.52	24.05	51.28	40.12	49.83	52.81	56.16	22.48
Merged-chr10-77033161-3	chr10	77032660	77033660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031196)	promoter-TSS (NM_031196)	-52.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	20.59	16.13	7.4	24.29	27.99	31.35	26.4	29.18	6.87
Merged-chr8-82374671-3	chr8	82374160	82375160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	27926.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	71.51	98.15	37.92	72.19	70.44	80.38	70.76	72.07	54.33
Merged-chr7-100530887-3	chr7	100530378	100531378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6222.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	139.01	166.34	86.95	126.85	132.02	100.47	133.08	182.62	76.82
Merged-chr2-34360211-3	chr2	34359734	34360734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290576, intron 2 of 7)	intron (NM_001290576, intron 2 of 7)	11811.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	18.31	23.04	16.65	36.43	21.93	37.78	30.63	23.88	22.48
Merged-chr11-98551119-3	chr11	98550606	98551606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166494)	promoter-TSS (NM_001166494)	9.0	NM_001166494	69376.0	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	2.86	5.53	3.7	20.24	7.93	3.22	12.67	5.31	3.12
Merged-chr10-17629911-3	chr10	17629399	17630399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93329.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	9.72	17.05	6.47	22.27	8.86	12.06	6.34	10.61	14.36
Merged-chr7-118170363-3	chr7	118169862	118170862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031814, intron 31 of 62)	RLTR13B1|LTR|ERVK	-40737.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	86.38	121.19	73.07	107.95	68.58	89.22	86.61	110.98	74.94
Merged-chr14-102810128-3	chr14	102809642	102810642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172490.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	81.8	86.17	71.22	72.87	48.52	86.81	92.94	89.32	93.68
Merged-chr3-30969379-3	chr3	30968893	30969893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165955)	promoter-TSS (NM_001165955)	22.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	128.71	135.01	141.52	149.11	127.82	129.41	185.89	125.13	75.57
Merged-chr12-72085097-2	chr12	72084643	72085643	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	170.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	60.64	53.45	35.15	76.24	71.84	65.91	80.27	86.22	36.22
Merged-chr12-103434187-3	chr12	103433680	103434680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026790)	promoter-TSS (NM_026790)	-9.0	NM_026790	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	98.97	104.6	75.85	116.05	102.17	104.49	124.63	155.64	63.08
Merged-chr12-99884501-3	chr12	99883995	99884995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-20.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	41.19	46.54	37.0	43.18	48.52	40.99	69.71	76.49	34.35
Merged-chr13-5714384-3	chr13	5713871	5714871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143721.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	145.3	176.94	86.02	173.4	179.61	117.35	148.92	142.82	89.31
Merged-chr18-60729309-3	chr18	60728807	60729807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-1741.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	92.67	106.44	98.97	103.23	113.83	104.49	124.63	137.96	74.94
Merged-chr11-69778159-3	chr11	69777667	69778667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	12255.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	29.75	8.75	10.17	17.54	7.46	22.51	11.62	11.05	14.36
Merged-chr15-99823583-3	chr15	99823092	99824092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 3 of 10)	intron (NM_001113545, intron 3 of 10)	-3443.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	152.74	108.28	77.7	92.44	65.78	37.78	63.37	61.46	21.23
Merged-chr19-5912864-3	chr19	5912357	5913357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291078)	promoter-TSS (NM_001291078)	14.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	181.34	120.26	108.22	149.11	111.5	108.51	142.59	196.32	92.43
Merged-chr5-140321602-3	chr5	140321097	140322097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010752)	promoter-TSS (NM_010752)	-25.0	NM_001356585	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	102.4	101.37	53.65	77.59	96.1	107.71	126.74	130.88	54.96
Merged-chr14-45351136-3	chr14	45350677	45351677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019637)	promoter-TSS (NM_019637)	-9.0	NM_019637	56291.0	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	106.4	67.74	63.82	104.58	61.11	83.59	106.67	58.37	44.97
Merged-chr16-97851599-8	chr16	97851096	97852096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	254.0	NM_001359078	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	133.86	75.11	103.59	116.05	48.05	80.38	148.92	41.56	61.83
Merged-chr12-103333077-3	chr12	103332580	103333580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 6 of 9)	MIR3|SINE|MIR	18121.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	38.33	36.4	43.47	43.86	11.2	23.31	32.74	23.43	12.49
Merged-chr1-58424094-3	chr1	58423614	58424614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027853)	promoter-TSS (NR_027853)	-26.0	NM_001042634	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	421.6	527.6	318.18	505.36	545.81	431.63	310.52	394.41	234.82
Merged-chr2-165318059-3	chr2	165317567	165318567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1716.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	276.87	274.63	141.52	324.54	307.9	278.91	266.16	330.3	118.66
Merged-chrX-140599396-3	chrX	140598908	140599908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 1 of 3)	CpG	1114.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	56.63	32.72	52.72	68.82	45.72	37.78	45.42	26.97	27.48
Merged-chr7-128740519-3	chr7	128740018	128741018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145955)	promoter-TSS (NM_145955)	-89.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	162.46	104.6	172.97	116.05	84.44	92.44	121.46	70.3	79.32
Merged-chr6-122598615-3	chr6	122598116	122599116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	RLTR14|LTR|ERV1	3828.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	262.0	279.24	187.77	246.95	189.87	150.31	287.28	371.42	144.27
Merged-chr5-115559865-3	chr5	115559346	115560346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007475, exon 2 of 7)	exon (NM_007475, exon 2 of 7)	379.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	270.01	176.48	178.52	254.37	180.54	216.22	228.14	197.21	141.77
Merged-chr14-54417801-3	chr14	54417308	54418308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253679)	promoter-TSS (NM_001253679)	-106.0	NM_011405	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	43.48	34.56	9.25	28.34	21.93	25.72	26.4	15.48	16.24
Merged-chrX-160766062-3	chrX	160765570	160766570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1943.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	23.45	24.88	13.87	31.04	18.66	12.86	41.19	23.43	19.36
Merged-chr11-98809698-3	chr11	98809188	98810188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138660)	promoter-TSS (NM_138660)	-120.0	NM_138660	192160.0	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	287.17	218.87	200.71	271.24	187.07	198.54	291.51	280.33	144.27
Merged-chrM-1390-2	chrM	897	1897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											272.87	247.9	21.27	136.29	42.45	19.29	114.07	35.82	28.73
Merged-chr7-19077681-1	chr7	19077181	19078181	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1481.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	25.74	21.2	18.5	15.52	9.8	22.51	147.87	127.34	64.33
Merged-chr11-83078234-3	chr11	83077743	83078743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13131.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	124.14	117.04	90.65	106.61	67.18	102.08	130.97	132.21	88.06
Merged-chr13-65278766-3	chr13	65278257	65279257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178364)	promoter-TSS (NM_178364)	-97.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	33.18	52.07	37.92	52.63	38.25	69.93	55.98	53.06	58.08
Merged-chr10-112163625-3	chr10	112163084	112164084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310675)	promoter-TSS (NM_001310675)	-37.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	5.72	10.6	12.02	8.1	7.46	3.22	4.22	1.33	0.0
Merged-chr4-15080637-1	chr4	15080137	15081137	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178617, intron 3 of 12)	intron (NM_178617, intron 3 of 12)	68494.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	4.58	2.3	2.77	7.42	6.06	11.25	1.06	1.33	3.12
Merged-chr11-69418991-3	chr11	69418478	69419478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5303.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	419.89	251.13	148.92	296.2	222.06	155.93	266.16	262.65	114.29
Merged-chr2-92183335-3	chr2	92182830	92183830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-852.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	90.38	48.84	80.47	87.04	38.72	70.73	64.43	38.03	41.22
Merged-chr2-98665150-3	chr2	98664652	98665652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1197495.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1713.87	3538.82	1790.71	1469.53	3161.99	1275.61	1544.14	1616.56	983.01
Merged-chr9-114781703-5	chr9	114781205	114782205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133978, exon 1 of 5)	exon (NM_133978, exon 1 of 5)	288.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	154.45	132.25	152.62	158.56	153.95	182.46	247.15	230.81	151.76
Merged-chr11-82004974-3	chr11	82004465	82005465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30612.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	30.89	26.73	22.2	37.11	23.33	27.33	36.97	34.93	34.35
Merged-chr7-143020940-3	chr7	143020432	143021432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110354)	TTS (NR_110354)	15273.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	215.66	193.99	116.54	165.98	111.5	132.63	181.66	245.4	103.67
Merged-chr13-48546654-3	chr13	48546145	48547145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8373.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	284.31	256.66	279.34	249.65	216.93	220.24	299.96	209.59	164.88
Merged-chr5-52189950-4	chr5	52189465	52190465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015537)	promoter-TSS (NR_015537)	581.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	303.76	405.03	273.79	319.14	387.2	249.98	329.53	260.44	182.36
Merged-chr1-89644322-3	chr1	89643825	89644825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	39567.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	106.97	121.19	74.92	119.43	124.56	94.04	117.24	110.54	66.82
Merged-chr2-84811094-3	chr2	84810624	84811624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_024230)	TTS (NM_024230)	11528.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	20.02	23.04	27.75	26.99	34.06	28.94	15.84	23.88	11.87
Merged-chr11-98949811-3	chr11	98949268	98950268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	intron (NM_001177302, intron 2 of 9)	10057.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	122.99	83.4	76.77	108.63	57.38	64.3	108.79	115.41	58.71
Merged-chr4-43562478-3	chr4	43561977	43562977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	106.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	221.96	197.68	145.22	152.49	125.02	144.68	166.88	168.02	128.03
Merged-chr5-136953164-3	chr5	136952674	136953674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163243)	promoter-TSS (NM_001163243)	-101.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	57.78	47.0	50.87	51.28	45.72	89.22	64.43	77.82	31.23
Merged-chr16-92865602-3	chr16	92865099	92866099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39525.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	103.54	55.75	48.1	119.43	54.58	85.2	82.38	33.16	58.71
Merged-chr11-62879402-3	chr11	62878876	62879876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356521)	promoter-TSS (NM_001356521)	-79.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	221.96	226.25	124.87	215.91	272.91	149.5	243.98	250.27	89.93
Merged-chr5-115506628-3	chr5	115506138	115507138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133915)	promoter-TSS (NM_133915)	-38.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	136.15	78.33	90.65	110.65	62.05	103.69	99.28	80.92	78.69
Merged-chrX-36088716-3	chrX	36088207	36089207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23401.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	41.19	47.0	24.05	52.63	35.92	28.94	35.91	31.39	29.35
Merged-chr17-50530340-3	chr17	50529832	50530832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	20785.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	74.94	47.0	54.57	89.74	46.65	73.95	89.78	62.79	34.35
Merged-chr16-93032162-3	chr16	93031637	93032637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-206063.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	349.52	317.02	184.07	273.26	207.6	176.83	166.88	216.66	117.41
Merged-chr3-146111134-2	chr3	146110625	146111625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3089.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	57.78	43.77	61.05	82.32	42.92	63.5	10.56	12.38	12.49
Merged-chr6-124688457-3	chr6	124687935	124688935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	23743.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	70.93	49.76	24.05	89.06	57.85	49.83	54.92	50.85	39.97
Merged-chr3-21806642-3	chr3	21806144	21807144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270008.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.86	15.67	12.02	18.89	18.66	25.72	23.24	5.75	1.25
Merged-chr9-106230165-3	chr9	106229651	106230651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7553.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	128.14	100.91	62.9	106.61	68.11	67.52	119.35	109.22	69.32
Merged-chr12-87266741-3	chr12	87266239	87267239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	11.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	188.78	185.7	197.02	136.29	166.54	155.93	180.61	172.89	79.32
Merged-chr16-91869815-3	chr16	91869320	91870320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	61810.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	227.11	184.31	110.99	246.27	178.67	156.74	191.17	183.5	121.16
Merged-chr11-52004254-3	chr11	52003748	52004748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	27.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	241.41	259.88	166.49	248.97	208.53	167.99	271.44	321.46	160.5
Merged-chr11-90245825-3	chr11	90245342	90246342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3634.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	106.97	120.73	58.27	131.57	81.64	86.01	69.71	82.24	56.21
Merged-chr19-55808008-1	chr19	55807508	55808508	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	(T)n|Simple_repeat|Simple_repeat	66198.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.73	19.81	17.57	16.19	13.06	27.33	21.12	8.4	21.23
Merged-chr10-4430565-3	chr10	4430059	4431059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 1 of 13)	L2|LINE|L2	-1393.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	100.68	139.62	104.52	141.02	141.82	135.04	167.93	166.7	139.27
Merged-chr3-66985829-3	chr3	66985339	66986339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356273)	promoter-TSS (NM_001356273)	-128.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	60.64	47.46	38.85	64.1	28.92	54.66	91.89	49.52	39.97
Merged-chr7-12949652-3	chr7	12949160	12950160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16178.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	88.67	86.17	52.72	53.3	51.78	46.62	71.82	66.77	50.59
Merged-chr6-70824664-3	chr6	70824161	70825161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19854.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	10.3	13.82	3.7	27.66	31.72	24.92	17.96	17.69	6.87
Merged-chr3-122984587-3	chr3	122984088	122985088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133857)	promoter-TSS (NM_133857)	-141.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	180.2	130.4	159.09	171.38	128.29	156.74	166.88	137.07	96.18
Merged-chr19-6085719-3	chr19	6085224	6086224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024231)	promoter-TSS (NM_024231)	627.0	NM_026410	67849.0	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	83.52	78.79	53.65	68.15	50.85	65.91	74.99	121.15	57.46
Merged-chr9-59295479-3	chr9	59294976	59295976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	3904.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	22.88	36.4	34.22	58.03	31.72	58.68	65.48	47.75	47.46
Merged-chr10-121365995-3	chr10	121365481	121366481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	891.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	355.25	308.26	195.17	335.33	315.83	274.09	350.65	406.79	167.37
Merged-chr10-40258586-3	chr10	40258087	40259087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-875.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	108.12	99.99	83.25	80.29	70.91	54.66	105.62	124.25	70.57
Merged-chr4-138014331-3	chr4	138013831	138014831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16506.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	81.23	49.76	57.35	64.77	41.99	41.8	14.79	12.38	7.49
Merged-chr16-10482527-3	chr16	10482020	10483020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	2448.0	NM_001302618	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	44.62	35.94	25.9	37.11	14.93	39.39	47.53	35.37	22.48
Merged-chr9-18292173-3	chr9	18291657	18292657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-110.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	108.69	132.25	64.75	130.22	139.02	81.18	106.67	134.42	68.07
Merged-chr17-10321275-3	chr17	10320784	10321784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037588)	TTS (NR_037588)	1365.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	53.2	73.73	48.1	62.07	50.38	44.21	62.31	84.9	37.47
Merged-chr5-34336981-3	chr5	34336498	34337498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	66.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	432.47	490.74	432.88	396.73	456.71	391.44	352.77	449.24	255.43
Merged-chr7-141480991-3	chr7	141480485	141481485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	4605.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	6.29	10.14	12.02	11.47	7.46	12.06	12.67	1.77	6.25
Merged-chr7-35118478-4	chr7	35117909	35118909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-884.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	153.88	175.56	172.97	161.26	198.27	173.62	153.15	151.66	119.28
Merged-chr11-16988010-4	chr11	16987521	16988521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 5 of 9)	intron (NM_019549, intron 5 of 9)	20697.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	64.64	62.21	37.92	80.29	56.45	60.28	80.27	51.73	36.85
Merged-chr19-29063996-3	chr19	29063456	29064456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3345.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	44.62	60.82	32.37	37.11	42.92	37.78	45.42	69.42	46.84
Merged-chr9-111118658-3	chr9	111118125	111119125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 1 of 13)	CpG	514.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	274.59	246.52	151.69	385.26	334.02	244.35	291.51	243.19	134.9
Merged-chr10-110920159-3	chr10	110919713	110920713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007792)	promoter-TSS (NM_007792)	37.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	49.2	45.62	9.25	91.76	101.7	69.13	57.03	53.5	22.48
Merged-chr9-120571467-3	chr9	120570983	120571983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-34.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	199.07	179.25	172.04	169.35	170.74	162.37	194.34	190.13	96.18
Merged-chr8-83715169-3	chr8	83714697	83715697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197982)	promoter-TSS (NM_197982)	20.0	NM_197982	68278.0	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	122.99	102.75	134.12	107.95	91.9	90.02	105.62	102.14	89.93
Merged-chr3-52502382-3	chr3	52501889	52502889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14575.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	75.51	39.63	33.3	70.85	51.32	21.7	43.3	30.95	18.11
Merged-chr2-45276940-3	chr2	45276443	45277443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159501.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	162.46	176.02	72.15	186.9	137.62	143.07	148.92	165.81	101.8
Merged-chr13-34187741-3	chr13	34187238	34188238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	24774.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	209.94	188.46	84.17	162.61	133.42	108.51	172.16	183.5	68.07
Merged-chr10-60284457-3	chr10	60283942	60284942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-19.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	181.91	169.11	130.42	151.14	162.34	180.85	215.46	273.7	113.04
Merged-chr7-29211473-3	chr7	29210978	29211978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164658, intron 1 of 27)	intron (NM_001164658, intron 1 of 27)	2555.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	42.33	35.94	33.3	42.51	30.79	65.91	51.75	41.56	30.6
Merged-chr7-30422244-3	chr7	30421747	30422747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360907)	promoter-TSS (NM_001360907)	-159.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	462.22	493.5	307.08	445.99	443.65	356.88	363.33	489.04	220.46
Merged-chr16-17132443-3	chr16	17131943	17132943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022324)	promoter-TSS (NM_022324)	-60.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	116.13	106.44	53.65	119.43	99.83	77.97	95.06	92.86	28.1
Merged-chr10-44638850-3	chr10	44638351	44639351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	85.81	80.64	44.4	82.99	61.11	41.8	39.08	56.6	35.6
Merged-chr19-44555386-3	chr19	44554879	44555879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347447)	promoter-TSS (NM_001347447)	63.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	66.36	52.99	54.57	50.6	67.18	82.79	62.31	63.67	69.95
Merged-chr7-19935479-5	chr7	19934940	19935940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-14297.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	163.61	136.39	86.02	174.75	153.95	150.31	156.32	132.65	101.17
Merged-chr3-65655202-3	chr3	65654692	65655692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	6.86	5.53	7.4	11.47	12.6	8.04	10.56	3.98	5.0
Merged-chr11-117969245-3	chr11	117968727	117969727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007707, exon 1 of 2)	5' UTR (NM_007707, exon 1 of 2)	139.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	163.04	110.13	127.64	165.98	74.17	78.77	113.01	80.47	78.69
Merged-chr11-48856634-3	chr11	48856116	48857116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14804.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	57.78	84.32	41.62	52.63	49.45	61.09	55.98	84.9	46.22
Merged-chr8-35597260-3	chr8	35596784	35597784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-8264.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	29.17	22.58	37.0	38.46	30.79	32.96	35.91	27.86	23.11
Merged-chr10-127737175-3	chr10	127736678	127737678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2360.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	117.84	136.85	64.75	147.09	117.09	95.65	116.18	137.07	87.43
Merged-chrX-13846771-3	chrX	13846287	13847287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284504)	promoter-TSS (NM_001284504)	-231.0	NM_009806	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	68.65	68.2	40.7	60.72	50.85	58.68	70.76	75.17	44.34
Merged-chr12-112849517-1	chr12	112849017	112850017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11399.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	7.44	2.3	0.92	2.7	1.87	6.43	4.22	1.33	6.25
Merged-chr2-51147898-3	chr2	51147422	51148422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028810, intron 2 of 4)	CpG	1189.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	44.62	42.85	36.07	19.57	14.0	18.49	17.96	12.82	28.1
Merged-chr11-32565353-3	chr11	32564855	32565855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	32089.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	98.39	93.54	80.47	96.48	63.91	95.65	89.78	90.2	46.84
Merged-chr5-112324757-3	chr5	112324258	112325258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1611.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	208.8	136.85	101.74	270.56	193.13	116.55	188.0	182.17	76.82
Merged-chr11-69409538-3	chr11	69409038	69410038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	intron (NM_001017426, intron 1 of 22)	4137.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	696.76	481.98	370.91	613.99	438.52	347.24	533.37	642.03	234.82
Merged-chr11-103979613-3	chr11	103979141	103980141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	12770.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	191.07	226.71	191.47	267.86	250.52	244.35	247.15	289.18	165.5
Merged-chr9-69989413-3	chr9	69988913	69989913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016787)	promoter-TSS (NM_016787)	-53.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	267.72	258.04	330.21	244.25	218.33	263.64	239.75	196.32	196.73
Merged-chr3-5860685-3	chr3	5860187	5861187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284439.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	75.51	53.45	110.07	39.13	21.93	52.25	30.63	22.99	63.08
Merged-chr12-16866018-3	chr12	16865513	16866513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28965.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	61.78	62.67	47.17	45.21	35.45	51.44	54.92	56.16	44.34
Merged-chr13-110560764-3	chr13	110560270	110561270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165726.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	141.87	129.48	91.57	122.8	128.76	120.57	126.74	140.61	78.69
Merged-chr8-108694007-3	chr8	108693515	108694515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20629.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	35.47	32.25	11.1	49.25	34.52	40.19	36.97	25.2	24.36
Merged-chr13-17018100-2	chr13	17017605	17018605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138654, intron 12 of 13)	Lx5b|LINE|L1	676660.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	13.73	14.28	20.35	16.19	9.8	16.88	2.11	2.65	3.75
Merged-chr18-88824730-3	chr18	88824229	88825229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	69478.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	30.32	42.39	21.27	29.01	27.99	46.62	43.3	26.09	19.98
Merged-chr4-137356923-3	chr4	137356417	137357417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	842.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	383.85	231.31	220.14	319.14	179.61	186.48	248.2	176.87	171.12
Merged-chr2-144010513-3	chr2	144010070	144011070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	CpG	693.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	638.98	504.56	566.07	572.16	365.74	422.79	489.01	341.8	336.0
Merged-chr1-92972178-3	chr1	92971693	92972693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-926.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	148.73	110.13	83.25	161.26	99.37	147.09	105.62	95.51	81.19
Merged-chrX-74085772-3	chrX	74085271	74086271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081979)	promoter-TSS (NM_001081979)	-81.0	NM_001081979	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	76.66	85.25	83.25	88.39	76.97	85.2	100.34	58.81	47.46
Merged-chr2-26647052-3	chr2	26646562	26647562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6818.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	7.44	5.07	1.85	8.77	0.47	4.82	5.28	0.44	3.75
Merged-chr9-44418108-3	chr9	44417623	44418623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201372)	promoter-TSS (NM_201372)	-54.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	124.14	105.06	86.95	94.46	113.36	67.52	105.62	124.25	57.46
Merged-chr8-83955510-3	chr8	83955011	83956011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024184)	promoter-TSS (NM_024184)	-183.0	NM_024184	66929.0	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	55.49	55.75	35.15	18.22	29.86	26.53	32.74	35.37	15.61
Merged-chr17-17900961-3	chr17	17900466	17901466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13142.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	85.24	91.7	61.05	64.1	44.78	38.58	95.06	107.89	89.93
Merged-chr5-90366512-3	chr5	90366055	90367055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030886)	promoter-TSS (NM_030886)	-370.0	NM_198010	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	497.11	343.74	355.18	423.72	315.83	242.74	411.91	259.99	204.85
Merged-chr3-153262172-3	chr3	153261673	153262673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	36476.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	52.63	49.3	64.75	66.8	34.99	77.97	64.43	80.03	53.08
Merged-chr9-57075345-3	chr9	57074868	57075868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152107, exon 2 of 2)	non-coding (NR_152107, exon 2 of 2)	681.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	93.24	122.11	105.44	81.64	72.78	122.98	100.34	168.02	127.4
Merged-chr5-115653125-3	chr5	115652603	115653603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151603, exon 1 of 3)	non-coding (NR_151603, exon 1 of 3)	483.0	NR_151601	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	29.75	46.08	25.9	41.16	39.65	66.71	38.02	41.56	18.74
Merged-chr3-127492852-1	chr3	127492352	127493352	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	MLT1G1|LTR|ERVL-MaLR	6263.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.0	0.46	0.0	2.7	4.2	1.61	32.74	30.95	16.24
Merged-chr17-47688106-3	chr17	47687595	47688595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290337)	TTS (NM_001290337)	291.0	NM_025365	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	309.48	282.46	165.57	232.78	254.25	167.19	208.07	263.09	111.79
Merged-chr16-91485076-3	chr16	91484561	91485561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010508)	promoter-TSS (NM_010508)	-154.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	159.03	145.61	129.49	164.63	113.36	112.53	129.91	158.74	84.94
Merged-chr4-107577650-3	chr4	107577132	107578132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	105957.0	NR_151717	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	37.76	23.96	17.57	33.74	14.0	19.29	21.12	13.71	9.99
Merged-chr6-97396963-6	chr6	97396449	97397449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62337.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	143.01	129.94	108.22	142.37	104.96	100.47	144.7	157.41	111.17
Merged-chr5-72204709-3	chr5	72204189	72205189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	1346.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	92.1	139.62	64.75	66.12	83.97	73.95	158.43	152.99	74.94
Merged-chr2-132221746-3	chr2	132221269	132222269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26019.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	109.83	108.28	90.65	95.14	74.64	80.38	82.38	105.24	69.32
Merged-chr11-70795708-3	chr11	70795201	70796201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 3 of 4)	MTB|LTR|ERVL-MaLR	16860.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	52.63	46.54	66.6	47.23	27.06	62.7	49.64	72.07	46.22
Merged-chr19-11929801-1	chr19	11929301	11930301	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 9 of 18)	intron (NM_172635, intron 9 of 18)	6073.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	5.72	6.45	1.85	4.05	2.33	8.04	25.35	33.6	14.36
Merged-chr2-60120876-3	chr2	60120356	60121356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	4884.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	57.21	49.76	28.67	72.87	45.25	29.74	73.93	60.13	29.98
Merged-chr18-88820316-3	chr18	88819817	88820817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73890.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	23.45	17.05	24.05	35.76	18.66	19.29	25.35	26.53	11.24
Merged-chr8-119394846-3	chr8	119394351	119395351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019966)	promoter-TSS (NM_019966)	-41.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	144.73	100.91	114.69	133.59	131.09	145.49	123.57	72.96	69.32
Merged-chr16-31233582-3	chr16	31233022	31234022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32284.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	210.52	164.5	149.84	183.52	126.42	148.7	148.92	183.5	83.69
Merged-chr1-86525400-3	chr1	86524894	86525894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1163.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	368.97	444.66	213.66	388.64	481.44	281.33	356.99	517.78	237.32
Merged-chr1-136142552-2	chr1	136142062	136143062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	11172.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	321.49	294.44	220.14	397.41	261.71	282.93	419.31	457.2	184.86
Merged-chr2-174614137-3	chr2	174613634	174614634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29400.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	2.29	3.69	2.77	5.4	3.27	12.86	4.22	7.52	2.5
Merged-chr4-144892712-3	chr4	144892219	144893219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172424)	promoter-TSS (NM_001172424)	-108.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	88.1	79.25	70.3	95.14	103.1	100.47	91.89	103.02	81.19
Merged-chr19-8786341-3	chr19	8785843	8786843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177798)	promoter-TSS (NM_001177798)	-27.0	NM_146092	225895.0	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	148.16	143.76	89.72	150.46	139.02	80.38	176.38	141.94	66.2
Merged-chr19-9914573-3	chr19	9914081	9915081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15048.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	419.89	329.46	145.22	407.53	285.97	168.8	310.52	277.24	155.51
Merged-chr11-34047129-3	chr11	34046649	34047649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010696, exon 1 of 21)	5' UTR (NM_010696, exon 1 of 21)	221.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	213.38	160.35	149.84	202.42	114.76	153.52	275.66	195.88	142.39
Merged-chr8-117268210-3	chr8	117267714	117268714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	11195.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	97.82	93.08	104.52	112.68	76.97	105.3	73.93	91.97	71.82
Merged-chr1-138323266-3	chr1	138322763	138323763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49525.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	161.89	181.55	89.72	150.46	100.3	112.53	137.3	148.57	121.16
Merged-chr7-122920192-3	chr7	122919688	122920688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50271.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	62.35	69.12	65.67	87.04	45.72	91.63	116.18	114.08	70.57
Merged-chr1-149842036-3	chr1	149841539	149842539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	80400.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	88.67	105.98	68.45	143.04	133.42	141.47	145.75	211.8	108.04
Merged-chr1-35995424-3	chr1	35994935	35995935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72965.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	28.03	23.04	40.7	33.74	26.59	40.99	35.91	41.12	26.23
Merged-chr16-14361966-1	chr16	14361466	14362466	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	408.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	241.41	194.91	148.92	167.33	125.96	192.91	181.66	198.98	105.55
Merged-chr8-72144557-3	chr8	72144066	72145066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 3 of 7)	intron (NM_001001491, intron 3 of 7)	9274.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	18.31	28.11	37.92	53.3	61.11	67.52	19.01	25.2	19.98
Merged-chr1-133661413-3	chr1	133660859	133661859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	40.0	NM_144530	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	210.52	242.37	184.99	223.33	229.06	163.97	259.82	226.83	92.43
Merged-chr13-34236960-3	chr13	34236463	34237463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	RSINE1|SINE|B4	73999.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	42.33	44.7	47.17	45.88	27.52	20.9	57.03	63.67	28.73
Merged-chr9-66856113-1	chr9	66855613	66856613	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-21407.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	23.45	15.21	26.82	21.59	34.06	26.53	19.01	15.48	20.61
Merged-chr9-107982816-3	chr9	107982310	107983310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023738, intron 21 of 23)	intron (NM_023738, intron 21 of 23)	3106.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	69.22	67.74	80.47	74.89	46.18	57.87	55.98	45.1	56.21
Merged-chr2-127137271-3	chr2	127136772	127137772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3318.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	34.9	56.22	56.42	41.16	31.72	53.85	53.87	47.31	54.33
Merged-chr2-25194589-3	chr2	25194077	25195077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	2236.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	63.5	51.61	40.7	75.57	39.19	87.61	62.31	59.25	33.72
Merged-chr11-70432481-3	chr11	70431974	70432974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271360)	promoter-TSS (NM_001271360)	-106.0	NM_001271360	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	277.45	181.09	210.89	295.53	197.33	201.75	260.88	237.0	123.03
Merged-chr10-45577877-3	chr10	45577386	45578386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172473)	promoter-TSS (NM_172473)	57.0	NM_172473	209462.0	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	20.59	11.52	12.02	34.41	17.26	35.37	12.67	8.4	16.24
Merged-chr5-93193600-3	chr5	93193105	93194105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	12890.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	45.76	77.87	31.45	60.72	57.38	54.66	62.31	35.82	32.48
Merged-chr11-117991926-3	chr11	117991443	117992443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	5086.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	121.85	132.25	74.0	124.15	118.03	115.75	79.21	78.26	59.95
Merged-chr8-94551831-3	chr8	94551339	94552339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153507, intron 4 of 15)	intron (NM_153507, intron 4 of 15)	18811.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	21.17	8.75	18.5	17.54	11.2	15.27	31.69	34.05	12.49
Merged-chr3-113630005-4	chr3	113629477	113630477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026043, exon 1 of 15)	exon (NM_026043, exon 1 of 15)	172.0	NM_001287015	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	178.48	175.56	142.44	160.58	186.14	151.92	147.87	163.6	109.92
Merged-chr12-31351051-1	chr12	31350551	31351551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007861, intron 1 of 13)	CpG	420.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	160.18	182.47	166.49	140.34	158.61	151.92	195.39	146.8	105.55
Merged-chr4-141477821-3	chr4	141477305	141478305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019763, exon 12 of 16)	exon (NM_019763, exon 12 of 16)	33132.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	66.93	63.13	63.82	44.53	40.12	53.05	106.67	59.25	47.46
Merged-chr1-135313788-3	chr1	135313292	135314292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360858)	promoter-TSS (NM_001360858)	-55.0	NM_001360858	21854.0	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	Tim17a|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	64.07	46.08	34.22	78.94	55.98	65.91	104.56	63.23	39.97
Merged-chr10-77972343-1	chr10	77971843	77972843	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	84.66	74.19	89.72	91.09	67.64	116.55	94.0	96.83	69.95
Merged-chr7-4427464-3	chr7	4426972	4427972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290409, exon 6 of 6)	3' UTR (NM_001290409, exon 6 of 6)	18185.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	12.59	11.98	11.1	11.47	6.06	11.25	12.67	5.31	8.74
Merged-chr13-55471626-3	chr13	55471134	55472134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	CpG	6142.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	70.93	39.17	17.57	56.68	26.12	12.86	68.65	34.93	15.61
Merged-chr9-72958798-3	chr9	72958290	72959290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026314)	promoter-TSS (NM_026314)	5.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	69.79	76.03	48.1	51.28	59.71	59.48	98.23	86.22	47.46
Merged-chr6-86365571-3	chr6	86365074	86366074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025591)	promoter-TSS (NM_025591)	-109.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	98.39	61.75	53.65	91.76	69.98	56.27	82.38	87.11	34.35
Merged-chr9-116175268-3	chr9	116174777	116175777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009371)	promoter-TSS (NM_009371)	86.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	606.95	605.93	416.23	570.81	663.38	435.65	436.2	521.76	324.13
Merged-chr17-44777616-3	chr17	44777111	44778111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 1 of 11)	CpG	445.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	163.61	110.59	127.64	168.68	112.43	129.41	183.78	107.89	94.3
Merged-chr7-24208133-3	chr7	24207634	24208634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019940)	promoter-TSS (NM_019940)	15.0	NM_019940	56707.0	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	20.02	17.97	17.57	22.27	16.79	22.51	25.35	14.15	21.23
Merged-chr1-40356141-2	chr1	40355635	40356635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	31546.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	6.86	4.61	3.7	7.42	3.73	1.61	2.11	1.77	6.25
Merged-chrX-21566854-3	chrX	21566359	21567359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82235.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	101.83	125.79	43.47	113.35	94.23	61.89	83.44	106.56	46.84
Merged-chr10-67226198-3	chr10	67225701	67226701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001242396, exon 9 of 25)	exon (NM_001242396, exon 9 of 25)	40451.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	87.52	52.07	40.7	66.12	44.32	47.42	73.93	75.61	57.46
Merged-chr4-154933668-1	chr4	154933168	154934168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5591.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	65.21	57.14	46.25	63.42	27.99	30.54	127.8	108.33	64.33
Merged-chr15-81190886-3	chr15	81190385	81191385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015603)	promoter-TSS (NR_015603)	32.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	107.55	94.0	59.2	86.36	76.97	57.07	123.57	102.14	31.85
Merged-chr8-85084821-3	chr8	85084321	85085321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010764, intron 3 of 23)	intron (NM_010764, intron 3 of 23)	1552.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	88.1	79.25	59.2	85.69	47.12	46.62	105.62	78.26	44.34
Merged-chr16-8637599-3	chr16	8637085	8638085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016881)	promoter-TSS (NM_016881)	116.0	NM_025708	66690.0	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	120.7	160.35	116.54	156.53	222.52	159.95	202.79	199.86	108.67
Merged-chr4-138283016-3	chr4	138282524	138283524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190978, intron 6 of 11)	intron (NM_001190978, intron 6 of 11)	20773.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	5.72	3.23	5.55	2.7	3.73	6.43	3.17	3.54	1.87
Merged-chr9-54734530-3	chr9	54733995	54734995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023191)	promoter-TSS (NM_023191)	54.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	145.87	140.08	71.22	149.11	136.69	86.01	156.32	147.24	77.44
Merged-chr8-105900402-3	chr8	105899899	105900899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173432)	promoter-TSS (NM_173432)	-75.0	NM_173432	244631.0	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	202.51	174.64	109.14	174.08	175.87	125.39	189.06	142.82	79.32
Merged-chr15-97163233-3	chr15	97162725	97163725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	4019.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	116.13	83.4	60.12	149.11	115.69	121.37	103.51	95.51	59.33
Merged-chr4-19872150-2	chr4	19871600	19872600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50466.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	65.79	85.71	58.27	68.82	86.3	86.01	66.54	75.61	48.09
Merged-chr13-64248987-3	chr13	64248500	64249500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122989)	promoter-TSS (NM_001122989)	300.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	26.31	17.97	32.37	54.65	48.98	54.66	60.2	35.37	24.98
Merged-chr4-135206436-3	chr4	135205928	135206928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	66332.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	22.31	7.83	4.62	18.22	10.73	3.22	14.79	9.73	3.75
Merged-chr1-36309787-3	chr1	36309318	36310318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	2085.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	14.87	10.14	5.55	26.99	15.39	17.68	14.79	6.63	9.37
Merged-chr7-4526512-3	chr7	4526006	4527006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033548, exon 9 of 12)	exon (NM_001033548, exon 9 of 12)	-3978.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	44.05	48.84	30.52	51.95	55.05	58.68	72.88	60.13	28.73
Merged-chr16-91607177-3	chr16	91606668	91607668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9488.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	62.93	45.16	7.4	51.95	39.19	20.9	25.35	32.72	17.49
Merged-chr1-107513670-3	chr1	107513181	107514181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011111, intron 1 of 7)	intron (NM_011111, intron 1 of 7)	2171.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	33.18	22.58	12.02	33.74	17.73	19.29	28.52	30.95	6.25
Merged-chr15-64189444-3	chr15	64188944	64189944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	123229.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	43.48	38.25	49.02	32.39	25.19	50.64	42.25	23.88	31.85
Merged-chr11-72217261-3	chr11	72216730	72217730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1638.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	55.49	71.42	45.32	62.75	58.31	49.03	46.47	43.77	19.36
Merged-chr3-146445012-3	chr3	146444524	146445524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5443.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	52.06	57.6	49.02	87.71	52.25	60.28	70.76	63.67	59.95
Merged-chr1-93235780-3	chr1	93235290	93236290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172463)	promoter-TSS (NM_172463)	-107.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	28.03	20.74	22.2	32.39	15.39	19.29	17.96	10.61	32.48
Merged-chr16-38731112-3	chr16	38730608	38731608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11151.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	5.72	4.15	3.7	16.87	7.46	9.65	13.73	14.59	6.25
Merged-chr11-105506515-3	chr11	105506012	105507012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49777.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	38.9	30.41	24.97	21.59	16.33	24.11	28.52	13.27	20.61
Merged-chr1-151571448-3	chr1	151570953	151571953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022018)	promoter-TSS (NM_022018)	80.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	130.43	94.0	105.44	124.15	81.17	77.16	100.34	99.93	89.31
Merged-chr6-129388382-3	chr6	129387861	129388861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2487.0	NM_001204223	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	37.76	40.55	49.02	60.72	48.98	44.21	55.98	44.22	23.11
Merged-chr12-112617413-3	chr12	112616930	112617930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2617.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	132.14	95.84	61.05	170.03	137.15	152.72	157.37	160.06	71.82
Merged-chr10-81138323-3	chr10	81137821	81138821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	2050.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	252.85	137.77	165.57	236.83	101.7	192.91	208.07	146.36	128.03
Merged-chr4-72199188-3	chr4	72198755	72199755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285530, intron 2 of 17)	intron (NM_001285530, intron 2 of 17)	1638.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	86.95	70.04	50.87	93.11	73.71	52.25	57.03	63.23	39.35
Merged-chr13-113490696-3	chr13	113490185	113491185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	12159.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	78.37	47.46	27.75	77.59	40.59	68.32	103.51	69.86	28.1
Merged-chr19-4333992-3	chr19	4333489	4334489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-27767.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	128.14	179.25	73.07	119.43	110.56	108.51	113.01	112.31	86.18
Merged-chr7-16313005-4	chr7	16312476	16313476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 2 of 3)	intron (NM_133234, intron 2 of 3)	3393.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	306.62	237.3	173.89	302.95	187.54	210.59	301.01	350.64	156.76
Merged-chr11-32226485-3	chr11	32225977	32226977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010822)	promoter-TSS (NM_010822)	-28.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	34.32	35.94	37.0	37.11	45.72	46.62	38.02	38.91	38.72
Merged-chr15-81845888-3	chr15	81845389	81846389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12437.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	123.56	98.15	97.12	125.5	107.76	149.5	114.07	147.68	109.92
Merged-chr4-105225796-3	chr4	105225305	105226305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 5 of 5)	L2c|LINE|L2	68458.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	75.51	96.76	48.1	71.52	72.31	52.25	95.06	122.92	60.58
Merged-chr6-87914094-3	chr6	87913599	87914599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017477)	TTS (NM_017477)	123.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	143.01	129.94	105.44	185.55	167.48	130.21	133.08	110.54	78.69
Merged-chrX-48204641-3	chrX	48204155	48205155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172465, intron 2 of 9)	intron (NM_172465, intron 2 of 9)	4047.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	22.31	32.72	31.45	22.94	24.72	34.56	36.97	40.68	28.1
Merged-chr5-38560779-3	chr5	38560276	38561276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011715, intron 2 of 14)	intron (NM_011715, intron 2 of 14)	819.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	152.74	237.3	184.99	147.76	181.01	183.26	177.44	215.78	177.37
Merged-chr6-31453697-1	chr6	31453197	31454197	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	54869.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	10.3	21.2	10.17	27.66	15.86	18.49	29.57	20.34	14.99
Merged-chr3-19084529-2	chr3	19084035	19085035	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78560.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	2.86	6.45	3.7	3.37	7.46	4.82	4.22	1.33	3.75
Merged-chr19-11770375-3	chr19	11769865	11770865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025606)	promoter-TSS (NM_025606)	-50.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	115.55	149.75	96.2	147.09	139.02	103.69	183.78	168.47	74.32
Merged-chr13-75707394-3	chr13	75706885	75707885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138953)	promoter-TSS (NM_138953)	-99.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	149.31	93.08	46.25	163.96	115.23	103.69	135.19	108.33	66.2
Merged-chr17-34398828-3	chr17	34398330	34399330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	10.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	178.48	164.04	179.44	43.18	50.85	40.99	174.27	162.72	85.56
Merged-chr11-72689958-3	chr11	72689427	72690427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009671)	promoter-TSS (NM_009671)	-75.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	112.69	112.89	91.57	109.98	84.44	106.1	90.83	94.62	70.57
Merged-chr12-24708591-3	chr12	24708085	24709085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009104, exon 2 of 10)	exon (NM_009104, exon 2 of 10)	331.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	16.59	15.21	11.1	13.49	16.33	26.53	23.24	18.57	22.48
Merged-chr17-56256050-3	chr17	56255511	56256511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-782.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	244.27	214.26	175.74	176.78	196.87	136.64	164.76	269.28	142.39
Merged-chr6-113077295-3	chr6	113076784	113077784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	-40.0	NR_027008	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	327.79	261.26	221.99	265.84	183.8	245.96	257.71	237.0	170.5
Merged-chr2-26445409-3	chr2	26444902	26445902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-186.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	282.59	268.18	180.37	273.94	233.72	176.03	166.88	172.45	99.92
Merged-chr17-53587836-3	chr17	53587334	53588334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	L2a|LINE|L2	3708.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	50.34	40.55	24.05	45.88	39.19	30.54	44.36	40.68	29.98
Merged-chr17-55944959-1	chr17	55944459	55945459	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310337, intron 1 of 3)	intron (NM_001310337, intron 1 of 3)	300.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	184.2	164.5	106.37	193.64	161.41	160.76	177.44	181.73	115.54
Merged-chr14-101515679-1	chr14	101515179	101516179	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	93512.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	6.86	4.61	5.55	27.66	10.26	8.04	6.34	7.96	1.25
Merged-chr17-6827417-3	chr17	6826948	6827948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44668.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	156.74	176.94	103.59	211.19	234.65	153.52	266.16	254.69	83.06
Merged-chr12-55572349-3	chr12	55571844	55572844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7139.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	8.58	7.37	6.47	8.77	8.4	6.43	11.62	1.33	8.74
Merged-chr3-27270327-3	chr3	27269844	27270844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46733.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	84.66	73.26	55.5	107.28	65.31	69.13	114.07	113.64	44.34
Merged-chr10-7589813-3	chr10	7589345	7590345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359742)	promoter-TSS (NM_001359742)	45.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	45.19	36.86	48.1	37.78	37.32	25.72	50.7	53.94	35.6
Merged-chr6-17281207-3	chr6	17280701	17281701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277756)	promoter-TSS (NM_001277756)	16.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	14.3	5.07	14.8	16.19	7.0	17.68	9.51	5.31	8.74
Merged-chr19-10182903-3	chr19	10182441	10183441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	53.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	44.62	39.17	64.75	49.93	37.79	73.95	25.35	20.34	19.98
Merged-chr14-72709987-3	chr14	72709501	72710501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	2.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	286.6	211.96	195.17	201.07	177.74	201.75	234.47	156.97	156.13
Merged-chr10-42276785-3	chr10	42276288	42277288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019740)	promoter-TSS (NM_019740)	-46.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	603.52	508.24	477.28	628.16	524.82	385.82	472.11	515.57	271.05
Merged-chr11-115062191-3	chr11	115061698	115062698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172050)	promoter-TSS (NM_172050)	-159.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	114.41	94.92	83.25	31.71	19.59	40.19	58.09	45.1	58.08
Merged-chr7-13034718-3	chr7	13034150	13035150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168469)	TTS (NM_001168469)	127.0	NM_001360733	68953.0	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik|mVps2	charged multivesicular body protein 2A	protein-coding	208.23	210.12	196.09	149.79	182.87	189.69	177.44	202.07	167.37
Merged-chr3-116006873-3	chr3	116006378	116007378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163515)	promoter-TSS (NM_001163515)	528.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	247.7	209.2	145.22	212.54	173.07	189.69	178.5	184.83	154.88
Merged-chr7-19308133-5	chr7	19307645	19308645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 1 of 4)	intron (NM_001347586, intron 1 of 4)	1900.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	149.88	121.19	73.07	109.98	104.03	99.67	104.56	119.83	86.18
Merged-chr11-46454861-3	chr11	46454362	46455362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134250)	promoter-TSS (NM_134250)	-69.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	18.31	17.05	20.35	35.09	28.46	55.46	15.84	18.13	8.74
Merged-chr5-123721029-3	chr5	123720520	123721520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027494)	promoter-TSS (NM_027494)	24.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	64.64	67.27	55.5	67.47	67.18	82.79	110.9	99.49	56.21
Merged-chr4-59254603-3	chr4	59254076	59255076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5475.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	165.32	192.15	92.5	156.53	210.4	106.9	183.78	263.53	109.29
Merged-chr9-57537619-3	chr9	57537222	57538222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166364, exon 1 of 5)	exon (NM_001166364, exon 1 of 5)	194.0	NM_001166364	78323.0	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	50.34	40.09	61.97	54.65	46.18	90.83	45.42	42.01	49.96
Merged-chr12-102440338-2	chr12	102439835	102440835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011175)	promoter-TSS (NM_011175)	-522.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	224.25	154.36	101.74	186.22	117.09	159.95	218.63	182.62	114.29
Merged-chr11-102297147-3	chr11	102296654	102297654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098837)	promoter-TSS (NM_001098837)	-525.0	NM_001098837	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	157.31	85.25	132.27	102.56	75.11	99.67	155.26	84.9	83.69
Merged-chr4-139622769-3	chr4	139622279	139623279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175438)	promoter-TSS (NM_175438)	-115.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	128.14	93.08	73.07	84.34	69.98	82.79	121.46	109.66	51.84
Merged-chr2-119594267-3	chr2	119593780	119594780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015473)	promoter-TSS (NR_015473)	-16.0	NR_027832	66602.0	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	70.36	68.2	91.57	82.32	59.71	53.05	68.65	60.58	44.34
Merged-chr17-5211046-3	chr17	5210550	5211550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207717.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	70.36	59.9	50.87	62.75	85.84	69.93	68.65	47.31	29.98
Merged-chr3-19350160-1	chr3	19349660	19350660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38838.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.29	2.76	6.47	1.35	7.0	6.43	7.39	3.1	3.75
Merged-chr9-103364917-3	chr9	103364444	103365444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	35.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	371.83	272.78	268.24	343.43	233.25	227.47	350.65	202.51	154.88
Merged-chr4-40722427-3	chr4	40721990	40722990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029594)	promoter-TSS (NR_029594)	22.0	NM_008298	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	274.01	230.39	323.73	259.77	231.39	192.91	194.34	235.23	226.08
Merged-chr7-55857930-3	chr7	55857395	55858395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	15824.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	71.51	74.65	70.3	61.4	28.46	49.83	69.71	60.13	46.84
Merged-chr13-103920511-3	chr13	103920007	103921007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	79.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	522.86	358.03	306.16	485.12	308.83	289.36	464.72	299.79	206.09
Merged-chr19-41385166-3	chr19	41384642	41385642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031376)	promoter-TSS (NM_031376)	-72.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	341.52	333.15	292.29	346.13	304.16	262.84	352.77	420.06	202.35
Merged-chr1-181017483-3	chr1	181016987	181017987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312918)	promoter-TSS (NM_001312918)	82.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	127.0	105.98	82.32	132.92	92.37	90.02	102.45	139.28	71.2
Merged-chr11-89001792-3	chr11	89001287	89002287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	2384.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	184.77	207.81	139.67	179.47	191.27	125.39	212.29	221.97	140.52
Merged-chr16-38171525-3	chr16	38171026	38172026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 3 of 11)	intron (NM_001347232, intron 3 of 11)	-82266.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	80.66	64.51	53.65	58.7	24.26	42.6	44.36	21.67	33.1
Merged-chr19-61266710-3	chr19	61266248	61267248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-38330.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	33.18	28.11	44.4	55.33	41.52	40.99	41.19	32.28	16.24
Merged-chr4-3660140-3	chr4	3659632	3660632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	3626.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	95.53	96.3	76.77	126.85	116.16	85.2	121.46	134.86	81.19
Merged-chr4-101656256-3	chr4	101655765	101656765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175036, exon 3 of 4)	exon (NM_175036, exon 3 of 4)	8482.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	134.43	185.7	134.12	135.62	145.55	131.02	207.01	231.25	130.53
Merged-chr15-29026430-3	chr15	29025930	29026930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	686974.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	2.86	4.61	7.4	8.77	8.4	11.25	9.51	3.1	1.87
Merged-chr12-4843929-3	chr12	4843432	4844432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170858, intron 1 of 3)	intron (NM_001170858, intron 1 of 3)	629.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	85.81	87.09	34.22	87.04	97.03	69.93	99.28	118.06	38.1
Merged-chr7-80065533-2	chr7	80065031	80066031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	9726.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	93.24	58.06	49.02	76.92	63.45	85.2	44.36	39.8	19.36
Merged-chr4-6367672-3	chr4	6367148	6368148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1968.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	218.52	162.66	84.17	205.11	159.08	103.69	232.36	215.34	104.3
Merged-chr7-127588672-3	chr7	127588187	127589187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172281)	promoter-TSS (NM_172281)	-11.0	NM_172281	233900.0	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|BRE1-B|mKIAA0661	ring finger protein 40	protein-coding	167.04	171.87	94.35	155.19	112.43	77.16	125.69	157.85	99.92
Merged-chr2-75737398-3	chr2	75736893	75737893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32730.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	12.01	6.91	10.17	14.84	11.2	5.63	13.73	5.75	11.87
Merged-chr8-84689246-3	chr8	84688757	84689757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164560)	promoter-TSS (NM_001164560)	10.0	NM_198020	212528.0	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	39.47	29.95	61.05	47.23	30.32	51.44	41.19	35.82	31.23
Merged-chr10-19044066-3	chr10	19043584	19044584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-28674.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	98.39	83.4	61.05	76.92	56.45	92.44	84.49	83.57	70.57
Merged-chr16-57502447-3	chr16	57501959	57502959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-46783.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	180.2	163.12	64.75	174.75	110.1	89.22	122.52	134.42	59.33
Merged-chr10-21609750-3	chr10	21609229	21610229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	16584.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	76.08	74.19	94.35	149.79	118.96	110.92	177.44	165.81	58.08
Merged-chr2-166459150-3	chr2	166458645	166459645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015558)	TTS (NR_015558)	11694.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	98.39	58.06	36.07	109.3	57.85	41.8	90.83	56.16	41.22
Merged-chr10-7841993-3	chr10	7841549	7842549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	5668.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	215.09	189.38	137.82	226.03	148.35	134.23	159.48	181.29	129.28
Merged-chrX-48208678-3	chrX	48208181	48209181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172465)	promoter-TSS (NM_172465)	21.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	81.23	93.08	59.2	75.57	60.18	64.3	97.17	68.98	67.45
Merged-chr12-8865050-3	chr12	8864565	8865565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-56242.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	8.58	16.13	8.32	10.8	11.66	16.08	6.34	7.96	3.75
Merged-chr2-12084519-3	chr2	12084027	12085027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216719.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	26.31	23.5	24.05	18.89	14.46	12.86	14.79	19.9	7.49
Merged-chr14-51884905-4	chr14	51884442	51885442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029990)	promoter-TSS (NM_001029990)	100.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	79.52	68.66	50.87	64.77	57.85	39.39	72.88	38.91	38.72
Merged-chr10-60831546-3	chr10	60831008	60832008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359273)	promoter-TSS (NM_001359273)	73.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	44.05	19.35	11.1	47.23	20.53	30.54	27.46	12.82	20.61
Merged-chr1-52722806-3	chr1	52722310	52723310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 1 of 7)	intron (NM_001357464, intron 1 of 7)	4508.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	7.44	3.69	1.85	12.82	8.4	0.0	4.22	3.54	8.12
Merged-chr10-56228838-3	chr10	56228327	56229327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033385)	promoter-TSS (NM_001033385)	-138.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	49.77	71.88	52.72	44.53	44.78	58.68	55.98	48.64	49.96
Merged-chr10-128083173-3	chr10	128082673	128083673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016774)	promoter-TSS (NM_016774)	-134.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	107.55	112.89	103.59	122.12	123.16	110.92	109.84	130.88	66.2
Merged-chr2-153241464-3	chr2	153240970	153241970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018807)	promoter-TSS (NM_018807)	-62.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	221.38	170.03	188.69	313.74	204.33	206.57	230.25	161.83	148.64
Merged-chr6-124373749-3	chr6	124373260	124374260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9274.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	54.35	74.65	31.45	69.5	61.11	57.87	35.91	36.26	40.59
Merged-chr7-127184983-3	chr7	127184492	127185492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11085.0	NM_001285907	70233.0	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	68.65	46.08	22.2	76.24	20.53	28.13	51.75	49.96	24.36
Merged-chr15-80798532-3	chr15	80798049	80799049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-61.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	100.68	141.92	79.55	86.36	103.56	89.22	132.02	243.19	54.33
Merged-chr16-85124812-3	chr16	85124307	85125307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	48900.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	148.73	153.44	137.82	147.76	144.15	122.98	110.9	122.04	76.19
Merged-chr17-34934980-3	chr17	34934481	34935481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010893, exon 6 of 6)	3' UTR (NM_010893, exon 6 of 6)	3728.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	73.22	63.59	85.1	68.82	55.05	85.2	50.7	76.94	48.09
Merged-chr15-101277345-1	chr15	101276845	101277845	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6956.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	5.72	0.46	3.7	4.72	3.73	1.61	0.0	1.77	2.5
Merged-chr11-70229075-3	chr11	70228583	70229583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007528, exon 2 of 9)	exon (NM_007528, exon 2 of 9)	715.0	NM_007528	12029.0	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	30.32	28.11	25.9	24.96	8.4	22.51	34.85	25.65	11.24
Merged-chr10-71347749-3	chr10	71347255	71348255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-8.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	143.59	95.84	125.79	146.41	111.03	132.63	133.08	130.0	68.07
Merged-chr2-177498194-3	chr2	177497691	177498691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036450)	promoter-TSS (NR_036450)	-35.0	NR_036450	433520.0	Mm.425117	NM_001024825		Gm14403	-	predicted gene 14403	ncRNA	8.58	10.6	5.55	8.77	15.39	11.25	16.9	12.82	6.25
Merged-chr16-50225152-3	chr16	50224649	50225649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347240, exon 12 of 17)	exon (NM_001347240, exon 12 of 17)	-152297.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	13.73	4.15	12.95	4.72	7.46	8.04	3.17	0.44	8.12
Merged-chr8-120179187-3	chr8	120178690	120179690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_001033980	436062.0	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	2.29	2.3	1.85	7.42	5.6	1.61	2.11	3.1	8.12
Merged-chr12-85346601-3	chr12	85346087	85347087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-7225.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	195.07	192.15	156.32	216.58	158.15	159.15	224.97	287.41	140.52
Merged-chr18-46311924-3	chr18	46311411	46312411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160399)	promoter-TSS (NM_001160399)	17.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	17.73	14.28	11.1	28.34	25.19	28.94	25.35	12.38	13.74
Merged-chrX-7714289-1	chrX	7713789	7714789	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7931.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	112.69	63.59	36.07	87.71	56.45	44.21	83.44	75.17	33.72
Merged-chr14-87141274-3	chr14	87140763	87141763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019670)	promoter-TSS (NM_019670)	-39.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	14.87	6.45	4.62	22.94	11.2	3.22	19.01	12.82	8.74
Merged-chr17-45613180-3	chr17	45612684	45613684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11082.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	50.34	35.48	23.12	44.53	34.06	62.7	30.63	34.49	48.71
Merged-chr15-4024917-3	chr15	4024424	4025424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028266, intron 1 of 1)	intron (NR_028266, intron 1 of 1)	-1504.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	96.11	91.24	55.5	84.34	79.77	91.63	68.65	96.83	38.72
Merged-chr9-90237996-3	chr9	90237512	90238512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	32757.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	339.23	351.58	206.26	321.84	334.02	272.48	322.14	371.86	169.25
Merged-chr4-135314022-3	chr4	135313524	135314524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39190.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	485.67	348.35	146.14	499.97	327.96	198.54	287.28	346.22	149.89
Merged-chr11-67047358-3	chr11	67046860	67047860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025510, intron 2 of 4)	intron (NM_025510, intron 2 of 4)	5258.0	NM_025510	66358.0	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	22.88	19.81	18.5	28.34	18.66	24.11	25.35	19.9	20.61
Merged-chr9-100446188-3	chr9	100445698	100446698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40275.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	29.75	25.8	31.45	14.84	20.99	17.68	22.18	13.27	6.25
Merged-chr19-60581086-3	chr19	60580603	60581603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172096)	promoter-TSS (NM_001172096)	-80.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	190.49	241.45	182.22	203.09	252.85	180.85	253.48	302.44	159.88
Merged-chr13-33003115-3	chr13	33002611	33003611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1430.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	36.04	24.88	29.6	28.34	21.93	13.66	62.31	49.52	16.24
Merged-chr10-60277683-3	chr10	60277170	60278170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146120)	promoter-TSS (NM_001146120)	42.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	195.64	178.32	211.81	267.19	215.06	216.22	258.77	236.12	148.64
Merged-chr2-164805007-3	chr2	164804495	164805495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178375)	promoter-TSS (NM_178375)	-114.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	181.91	161.27	100.82	193.64	192.2	138.25	162.65	189.25	102.42
Merged-chr5-142895282-3	chr5	142894765	142895765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-27.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	72.65	69.12	85.1	66.12	62.98	86.01	92.94	128.23	48.09
Merged-chr8-84737805-3	chr8	84737306	84738306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36349.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	28.03	16.59	14.8	28.34	17.26	18.49	25.35	16.8	5.62
Merged-chr1-92666853-3	chr1	92666352	92667352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-18011.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	85.81	87.55	46.25	91.09	70.91	85.2	80.27	65.44	32.48
Merged-chr8-25052122-3	chr8	25051611	25052611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-13149.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	97.25	98.61	78.62	82.99	63.45	111.73	63.37	65.44	64.95
Merged-chr9-75549187-1	chr9	75548687	75549687	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	10470.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	8.01	8.29	16.65	12.14	7.0	11.25	55.98	43.33	46.22
Merged-chr12-3359562-3	chr12	3359043	3360043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5589.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	152.74	195.83	163.72	153.16	170.28	152.72	272.5	332.95	126.15
Merged-chr14-121379874-2	chr14	121379380	121380380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-650.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	105.26	82.94	123.02	89.06	71.84	140.66	108.79	92.86	89.31
Merged-chr9-107533982-3	chr9	107533473	107534473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019704)	promoter-TSS (NM_019704)	28.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	68.07	68.66	46.25	80.97	76.97	47.42	71.82	72.96	48.71
Merged-chr8-34807196-3	chr8	34806694	34807694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176933)	promoter-TSS (NM_176933)	-416.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	61.21	32.72	30.52	64.77	49.92	12.06	80.27	42.89	18.11
Merged-chr15-86168744-3	chr15	86168251	86169251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-16977.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	355.82	311.49	211.81	512.11	383.94	275.7	423.53	474.0	217.96
Merged-chr2-34943907-3	chr2	34943409	34944409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001326601, exon 10 of 10)	exon (NM_001326601, exon 10 of 10)	17863.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	97.82	64.51	37.0	91.09	62.51	50.64	43.3	24.32	32.48
Merged-chr8-13551206-3	chr8	13550701	13551701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025601, intron 8 of 8)	intron (NM_025601, intron 8 of 8)	11260.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	1.72	5.07	4.62	5.4	3.27	1.61	3.17	1.33	2.5
Merged-chr10-26772426-3	chr10	26771943	26772943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176837)	promoter-TSS (NM_176837)	-69.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	166.47	154.82	86.02	147.76	144.15	117.35	98.23	120.27	50.59
Merged-chr7-140881854-3	chr7	140881353	140882353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177804)	promoter-TSS (NM_001177804)	16.0	NM_001127351	64384.0	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	48.62	52.07	41.62	46.56	35.92	51.44	42.25	43.77	25.61
Merged-chr5-149690050-2	chr5	149689552	149690552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	11795.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	13.16	9.68	23.12	19.57	10.73	13.66	10.56	2.65	13.74
Merged-chr18-12973269-3	chr18	12972762	12973762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008378, intron 1 of 10)	(CTCGG)n|Simple_repeat|Simple_repeat	-1198.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	317.49	276.93	162.79	267.19	344.75	221.85	217.57	300.23	138.65
Merged-chr11-76884745-1	chr11	76884245	76885245	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-19800.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	2.29	14.28	7.4	16.87	26.59	24.11	14.79	5.75	3.75
Merged-chr11-50276073-3	chr11	50275565	50276565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	B4A|SINE|B4	16271.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	60.07	46.08	45.32	66.8	38.72	48.23	63.37	50.85	23.11
Merged-chr17-27851328-3	chr17	27850817	27851817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5190.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	144.73	106.44	50.87	226.03	166.54	90.83	211.24	232.14	96.8
Merged-chr16-3743453-1	chr16	3742953	3743953	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-646.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	127.0	144.23	146.14	185.55	200.13	216.22	262.99	291.39	139.89
Merged-chr6-148534619-3	chr6	148534155	148535155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79654.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	99.54	115.2	79.55	107.28	81.17	94.85	87.66	107.89	92.43
Merged-chr12-78748835-3	chr12	78748342	78749342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019579)	promoter-TSS (NM_019579)	-105.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	161.89	148.83	94.35	213.21	193.13	146.29	181.66	143.7	75.57
Merged-chr17-88462887-3	chr17	88462412	88463412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355743, exon 2 of 5)	exon (NM_001355743, exon 2 of 5)	22208.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	38.33	38.25	18.5	53.98	35.92	32.96	51.75	43.77	32.48
Merged-chr17-27565838-3	chr17	27565340	27566340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002895)	promoter-TSS (NM_001002895)	-113.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	124.71	102.75	103.59	105.93	106.36	111.73	91.89	110.54	68.7
Merged-chr7-101663666-3	chr7	101663169	101664169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009191)	promoter-TSS (NM_009191)	-99.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	55.49	50.23	56.42	42.51	36.85	52.25	49.64	43.33	24.98
Merged-chr9-64281607-3	chr9	64281102	64282102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324557)	promoter-TSS (NM_001324557)	17.0	NM_001324557	66131.0	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	23.45	33.64	24.05	22.94	18.19	28.13	19.01	21.22	21.86
Merged-chr15-103366631-3	chr15	103366120	103367120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010577, exon 1 of 30)	5' UTR (NM_010577, exon 1 of 30)	171.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	130.43	107.36	133.19	64.77	63.91	86.81	114.07	82.24	76.19
Merged-chr11-114684748-3	chr11	114684251	114685251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9283.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	116.13	59.44	58.27	123.47	56.91	84.4	118.29	101.7	44.97
Merged-chr7-110164954-3	chr7	110164458	110165458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42899.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	205.94	200.44	124.87	243.57	235.12	151.11	208.07	298.46	138.65
Merged-chr17-7945852-3	chr17	7945341	7946341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025789, exon 1 of 8)	exon (NM_025789, exon 1 of 8)	227.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	81.8	62.67	52.72	70.17	70.44	49.83	77.1	56.6	34.35
Merged-chr16-76053731-3	chr16	76053229	76054229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52945.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	29.75	33.18	23.12	35.09	30.79	32.15	30.63	38.03	23.73
Merged-chr12-113000808-3	chr12	113000297	113001297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028193)	promoter-TSS (NM_028193)	-176.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	161.32	108.28	130.42	95.14	85.84	126.19	120.41	98.16	67.45
Merged-chr4-101356246-3	chr4	101355742	101356742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	6.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	380.99	318.4	310.78	389.99	280.37	249.17	368.61	274.59	218.58
Merged-chr12-83487815-3	chr12	83487327	83488327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267626)	promoter-TSS (NM_001267626)	-91.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	2.86	2.3	7.4	6.07	3.27	4.82	7.39	3.98	1.25
Merged-chr10-94961504-3	chr10	94961005	94962005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-16927.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	13.73	6.91	16.65	31.04	15.86	20.09	14.79	6.63	1.25
Merged-chr16-24593730-3	chr16	24593254	24594254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	64440.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	243.69	159.43	86.95	226.03	130.16	124.59	188.0	129.11	89.93
Merged-chr11-87749674-3	chr11	87749195	87750195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7169.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	374.12	313.33	214.59	304.97	265.44	261.23	379.17	442.61	205.47
Merged-chr9-59735863-3	chr9	59735346	59736346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001172071, exon 3 of 3)	3' UTR (NM_001172071, exon 3 of 3)	14803.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	139.01	142.38	80.47	191.62	136.22	135.84	197.51	216.22	82.44
Merged-chr1-106796288-1	chr1	106795788	106796788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009190, intron 1 of 10)	CpG	437.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	369.55	423.0	269.16	357.6	397.0	286.95	310.52	361.25	213.59
Merged-chr2-60125316-3	chr2	60124832	60125832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	408.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	299.76	244.68	168.34	317.12	226.26	180.05	228.14	190.13	121.78
Merged-chr15-50890088-3	chr15	50889602	50890602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035444)	promoter-TSS (NR_035444)	-61.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	105.83	83.86	44.4	109.98	75.57	54.66	91.89	68.98	38.72
Merged-chr2-144009667-3	chr2	144009167	144010167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	1596.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	304.9	343.74	263.61	271.91	164.68	228.28	280.95	272.37	144.27
Merged-chr15-86204128-3	chr15	86203661	86204661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10298.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	97.82	87.55	110.07	141.02	93.77	132.63	116.18	150.34	104.92
Merged-chr10-80755066-3	chr10	80754569	80755569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199322)	promoter-TSS (NM_199322)	-134.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	227.11	150.68	125.79	174.75	70.91	114.14	184.83	173.77	102.42
Merged-chr18-39619513-3	chr18	39619008	39620008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132263.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	36.04	33.18	34.22	75.57	41.99	52.25	61.26	64.56	38.72
Merged-chr9-107998053-3	chr9	107997560	107998560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4588.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	36.61	32.25	37.0	37.11	22.39	34.56	26.4	15.92	13.74
Merged-chr2-91948255-1	chr2	91947755	91948755	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2093.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	267.15	162.2	104.52	146.41	129.22	111.73	99.28	87.55	47.46
Merged-chr8-11039030-3	chr8	11038549	11039549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-30619.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	72.08	56.68	33.3	110.65	73.24	61.89	49.64	40.68	14.36
Merged-chr5-135478967-3	chr5	135478466	135479466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	B4|SINE|B4	66156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	283.74	222.56	225.69	269.21	193.6	207.38	197.51	265.74	148.64
Merged-chr8-66490823-3	chr8	66490315	66491315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4285.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	16.02	17.05	20.35	10.8	12.6	8.04	41.19	42.89	23.11
Merged-chr6-140678804-3	chr6	140678296	140679296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009637)	TTS (NM_009637)	51911.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.86	5.07	2.77	4.72	2.33	0.0	6.34	3.1	10.62
Merged-chr3-144718733-3	chr3	144718248	144719248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1587.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	292.32	342.82	215.51	293.5	297.17	164.78	371.78	470.02	209.84
Merged-chr13-55714660-3	chr13	55714163	55715163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175150)	promoter-TSS (NM_175150)	13.0	NM_175150	69672.0	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	61.78	52.07	68.45	66.12	56.45	86.81	69.71	39.8	46.84
Merged-chr10-51422441-1	chr10	51421941	51422941	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-58171.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	22.88	23.5	29.6	29.01	27.06	26.53	22.18	15.92	19.36
Merged-chr13-76018681-3	chr13	76018209	76019209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178916)	promoter-TSS (NM_178916)	3.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	89.24	98.61	89.72	97.16	101.7	91.63	222.86	272.37	119.91
Merged-chr10-130542258-3	chr10	130541745	130542745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44866.0	NM_001103366	625131.0	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	17.16	11.06	3.7	29.69	19.59	12.86	26.4	20.78	7.49
Merged-chr7-45016296-3	chr7	45015814	45016814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008422)	promoter-TSS (NM_001008422)	-65.0	NM_001008422	233208.0	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	127.57	85.25	99.89	99.86	69.98	90.02	111.96	111.87	68.7
Merged-chr6-52012172-2	chr6	52011679	52012679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 1 of 12)	intron (NM_018773, intron 1 of 12)	370.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	104.69	87.09	154.47	102.56	95.63	178.44	135.19	149.89	129.28
Merged-chr15-59726020-3	chr15	59725513	59726513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68946.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	29.17	22.58	21.27	43.86	23.33	16.88	23.24	22.11	13.74
Merged-chr1-160234780-1	chr1	160234280	160235280	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 6 of 8)	RMER6A|LTR|ERVK	-21888.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	11.44	14.28	10.17	50.6	50.38	40.99	7.39	9.29	11.24
Merged-chr19-43669583-3	chr19	43669085	43670085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	5296.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	24.6	36.86	39.77	25.64	19.13	43.4	41.19	54.83	41.22
Merged-chr11-62602862-3	chr11	62602422	62603422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030738)	promoter-TSS (NR_030738)	45.0	NR_030738	69221.0	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	443.91	406.41	227.54	456.78	480.97	267.66	373.89	472.68	231.7
Merged-chr4-119177920-2	chr4	119177406	119178406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013848, exon 13 of 13)	3' UTR (NM_013848, exon 13 of 13)	-3711.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	41.76	25.8	20.35	4.05	1.4	3.22	57.03	50.85	29.35
Merged-chr10-39732859-4	chr10	39732391	39733391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	731.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	184.2	164.04	110.99	172.05	135.75	126.19	140.47	127.79	85.56
Merged-chr13-101540585-3	chr13	101540126	101541126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143046.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	132.72	80.64	58.27	158.56	79.77	87.61	109.84	94.18	44.34
Merged-chr5-53402939-3	chr5	53402427	53403427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135821.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	30.32	33.18	2.77	29.01	15.86	20.09	36.97	16.36	19.98
Merged-chr1-43462870-2	chr1	43462378	43463378	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	17127.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	9.72	8.29	7.4	76.92	83.51	57.07	90.83	86.22	46.22
Merged-chr5-85924551-1	chr5	85924051	85925051	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	141032.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	2.86	2.3	1.85	4.05	0.93	3.22	5.28	0.44	6.25
Merged-chr2-143063054-3	chr2	143062548	143063548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021335)	promoter-TSS (NM_021335)	-21.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	77.23	86.63	73.07	89.06	101.23	86.81	99.28	91.97	47.46
Merged-chr8-46739593-3	chr8	46739154	46740154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008391)	promoter-TSS (NM_008391)	-91.0	NM_008391	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	167.04	169.57	108.22	149.79	137.62	152.72	152.09	167.58	88.68
Merged-chr2-44976593-3	chr2	44976092	44977092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	46585.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	13.73	6.45	4.62	19.57	9.33	20.9	5.28	6.19	11.24
Merged-chr19-56721938-3	chr19	56721443	56722443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007419)	promoter-TSS (NM_007419)	-429.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	289.46	257.12	258.06	263.14	195.93	205.77	262.99	228.6	182.99
Merged-chr2-118745668-3	chr2	118745174	118746174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301269)	promoter-TSS (NM_001301269)	-84.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	36.61	16.13	8.32	33.06	17.73	23.31	20.07	17.24	14.99
Merged-chr7-38201122-3	chr7	38200628	38201628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17341.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	10.87	17.51	15.72	18.89	13.53	13.66	7.39	3.1	3.75
Merged-chr13-21779447-3	chr13	21778938	21779938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020034)	TTS (NM_020034)	1187.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	161.32	246.52	99.89	111.33	158.15	111.73	215.46	284.76	149.89
Merged-chr15-101223247-3	chr15	101222749	101223749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019518)	promoter-TSS (NM_019518)	872.0	NR_045326	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	11.44	18.43	7.4	12.82	7.46	4.82	11.62	8.4	5.0
Merged-chr5-105626383-3	chr5	105625904	105626904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73565.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	174.48	206.89	125.79	159.91	137.62	114.14	144.7	203.84	91.18
Merged-chr13-37348339-3	chr13	37347828	37348828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	2983.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	129.28	142.84	70.3	83.66	80.24	74.75	124.63	155.64	94.93
Merged-chr5-22855272-2	chr5	22854761	22855761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-108377.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	27.46	30.41	27.75	3.37	5.13	0.0	49.64	49.52	24.36
Merged-chr2-29624458-3	chr2	29623941	29624941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4721.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	398.15	335.91	159.09	348.15	336.35	208.98	293.62	352.85	133.65
Merged-chr17-49019089-4	chr17	49018580	49019580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	86498.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	60.07	47.92	21.27	41.16	26.12	43.4	29.57	29.63	23.73
Merged-chr5-35105742-3	chr5	35105246	35106246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-49.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	76.66	75.57	71.22	93.11	83.97	85.2	99.28	81.8	53.08
Merged-chr10-57492239-3	chr10	57491758	57492758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008297, intron 1 of 11)	RLTR20D|LTR|ERVK	5873.0	NM_008297	15500.0	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	10.3	11.52	1.85	16.19	10.73	14.47	8.45	11.94	11.24
Merged-chr12-21287488-3	chr12	21286987	21287987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1190.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	78.94	128.56	86.02	82.99	82.57	78.77	111.96	138.4	71.82
Merged-chr18-67641443-3	chr18	67640924	67641924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134138)	promoter-TSS (NM_134138)	-69.0	NM_001081073	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	116.13	75.57	119.32	123.47	96.57	106.1	121.46	80.92	106.17
Merged-chr10-96351519-3	chr10	96351021	96352021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125314.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	13.73	15.67	14.8	10.8	5.13	8.04	10.56	13.27	10.62
Merged-chr11-106488438-1	chr11	106487938	106488938	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-642.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	75.51	57.6	51.8	115.38	80.71	87.61	113.01	110.1	56.83
Merged-chr5-130000935-3	chr5	130000439	130001439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010368, exon 2 of 12)	exon (NM_010368, exon 2 of 12)	2110.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	200.79	174.18	120.24	255.72	178.21	179.24	188.0	196.32	99.92
Merged-chr8-84979937-3	chr8	84979463	84980463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1215.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	395.29	284.3	198.87	342.76	231.39	244.35	296.79	311.29	166.75
Merged-chr6-92941464-2	chr6	92940965	92941965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	883.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	7.44	9.68	9.25	51.28	66.24	32.15	1.06	1.77	0.0
Merged-chr7-143461133-3	chr7	143460631	143461631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161624)	promoter-TSS (NM_001161624)	-81.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	10.87	2.3	3.7	4.05	2.8	7.23	2.11	1.33	2.5
Merged-chr1-37299844-3	chr1	37299354	37300354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290797)	promoter-TSS (NM_001290797)	16.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	65.79	65.43	49.95	85.69	104.96	64.3	100.34	81.36	33.1
Merged-chr11-73177112-3	chr11	73176609	73177609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	26.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	262.57	233.16	211.81	223.33	268.71	271.68	239.75	244.52	146.14
Merged-chr3-109045723-3	chr3	109045215	109046215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18108.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	12.59	13.36	12.95	21.59	17.26	9.65	17.96	11.94	16.86
Merged-chr1-125458733-3	chr1	125458221	125459221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22994.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	57.21	72.8	15.72	97.16	78.37	48.23	91.89	106.56	59.95
Merged-chr7-82802472-3	chr7	82801983	82802983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46839.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	55.49	38.25	38.85	31.71	23.33	34.56	38.02	43.33	31.23
Merged-chr10-111465000-3	chr10	111464503	111465503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8224.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	38.33	24.42	27.75	26.99	20.99	20.9	48.58	42.89	26.85
Merged-chr5-123025433-3	chr5	123024926	123025926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	10352.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	78.94	66.81	47.17	80.29	64.38	92.44	70.76	99.49	56.83
Merged-chr15-98831538-3	chr15	98831057	98832057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016781)	promoter-TSS (NM_016781)	-49.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	266.0	265.41	205.34	273.26	224.86	261.23	239.75	257.34	152.38
Merged-chr7-78912519-3	chr7	78912028	78913028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-896.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	52.06	54.37	24.97	57.35	59.71	45.82	40.14	33.6	33.72
Merged-chr16-38088963-3	chr16	38088462	38089462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019827)	promoter-TSS (NM_019827)	-39.0	NM_001347232	56637.0	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	267.15	265.87	194.24	219.28	213.19	208.18	229.19	256.46	151.76
Merged-chr17-29268891-3	chr17	29268402	29269402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030561, exon 1 of 9)	5' UTR (NM_030561, exon 1 of 9)	114.0	NM_030561	80748.0	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	77.8	70.04	48.1	72.87	57.85	80.38	105.62	63.67	51.21
Merged-chr18-77841690-3	chr18	77841180	77842180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 2 of 14)	L1_Mur3|LINE|L1	-45290.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	22.31	15.67	11.1	35.09	13.06	6.43	13.73	21.67	15.61
Merged-chr13-65241581-1	chr13	65241081	65242081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-35865.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	165.32	146.53	120.24	135.62	153.95	159.95	295.73	319.69	109.29
Merged-chr11-90240863-1	chr11	90240363	90241363	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8613.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	112.69	134.55	88.8	143.04	115.23	127.0	89.78	73.84	88.68
Merged-chr5-139380979-2	chr5	139380456	139381456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033147)	TTS (NR_033147)	317.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	320.35	285.69	283.96	425.07	358.28	245.96	306.29	371.42	150.51
Merged-chr5-77193442-3	chr5	77192939	77193939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	17766.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	47.48	59.44	34.22	5.4	3.73	12.86	25.35	29.63	29.35
Merged-chr17-67304460-3	chr17	67303936	67304936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	50023.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	77.8	49.76	16.65	65.45	54.58	42.6	132.02	149.89	89.31
Merged-chr11-3176719-2	chr11	3176216	3177216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B3|SINE|B2	16747.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	72.65	106.44	120.24	109.98	130.16	199.34	0.0	0.0	176.74
Merged-chr7-58399264-3	chr7	58398760	58399760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258942.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	28.03	28.57	14.8	37.78	27.99	20.9	21.12	19.01	28.1
Merged-chr10-80226536-3	chr10	80226023	80227023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023431)	promoter-TSS (NM_023431)	-75.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	14.87	15.67	1.85	24.96	7.0	4.82	21.12	11.05	9.37
Merged-chr14-70175428-3	chr14	70174931	70175931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	1384.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	111.55	101.83	106.37	93.11	61.58	74.75	117.24	107.0	91.81
Merged-chr4-122848215-3	chr4	122847688	122848688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 4 of 8)	intron (NM_008917, intron 4 of 8)	11961.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	127.57	123.03	78.62	124.82	123.62	98.87	116.18	148.13	69.95
Merged-chr11-88201389-1	chr11	88200889	88201889	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	-2999.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.86	8.29	9.25	6.07	12.6	32.96	8.45	4.86	2.5
Merged-chr9-118925454-3	chr9	118924916	118925916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1120.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	8.58	11.52	12.95	24.96	20.06	12.86	10.56	9.73	3.75
Merged-chr14-120453267-3	chr14	120452762	120453762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-25199.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	36.04	44.24	18.5	60.05	40.59	66.71	59.15	38.47	13.12
Merged-chr10-79960021-3	chr10	79959542	79960542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175450)	promoter-TSS (NM_175450)	-110.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	37.76	17.51	48.1	28.34	18.19	37.78	31.69	24.76	24.36
Merged-chr2-117838597-3	chr2	117838109	117839109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	16681.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	18.88	16.59	16.65	36.43	26.12	30.54	32.74	43.77	36.22
Merged-chrX-74312951-3	chrX	74312420	74313420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138607)	promoter-TSS (NM_138607)	-113.0	NM_138607	108160.0	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	182.49	176.94	112.84	188.25	195.93	122.98	181.66	188.81	103.67
Merged-chr19-46524840-3	chr19	46524346	46525346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23198.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	221.96	132.71	83.25	241.55	126.42	124.59	172.16	176.42	75.57
Merged-chr13-41001070-3	chr13	41000579	41001579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155347)	promoter-TSS (NR_155347)	67.0	NR_155347	102633880.0	Mm.314757	NR_155347		A730081D07Rik	-	RIKEN cDNA A730081D07 gene	ncRNA	259.71	312.87	242.34	244.92	299.03	222.65	304.18	317.03	199.22
Merged-chr16-23108324-3	chr16	23107818	23108818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030705)	promoter-TSS (NR_030705)	-635.0	NR_030705	100216532.0		NR_030705	ENSMUSG00000088524	Snord2	-	small nucleolar RNA, C/D box 2	snoRNA	229.97	328.08	209.96	227.38	321.89	241.14	197.51	290.5	174.87
Merged-chr12-80939395-3	chr12	80938926	80939926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	5973.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	336.94	405.03	234.94	255.04	295.3	218.63	362.27	424.92	193.6
Merged-chr12-35885353-3	chr12	35884840	35885840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40281.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	34.9	49.3	48.1	40.48	48.05	50.64	24.29	26.97	35.6
Merged-chr1-119837552-3	chr1	119837064	119838064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019933)	promoter-TSS (NM_019933)	-493.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	16.02	8.29	12.95	19.57	7.0	6.43	19.01	11.5	9.99
Merged-chr15-84350450-3	chr15	84349959	84350959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24340.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	19.45	9.22	14.8	24.29	13.53	14.47	39.08	21.22	6.25
Merged-chr11-103966492-3	chr11	103965987	103966987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304574)	promoter-TSS (NM_001304574)	-238.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	233.4	223.48	149.84	230.08	162.81	145.49	140.47	197.65	144.27
Merged-chr3-88531754-3	chr3	88531264	88532264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-631.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	26.89	14.75	26.82	29.01	23.33	32.15	38.02	24.32	13.74
Merged-chr12-24758528-3	chr12	24758024	24759024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50270.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	55.49	40.09	17.57	40.48	34.06	28.13	13.73	14.15	1.87
Merged-chr8-84437013-1	chr8	84436513	84437513	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	21649.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	11.44	10.14	14.8	17.54	20.06	20.9	0.0	0.88	3.75
Merged-chrX-152327556-3	chrX	152327052	152328052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040269)	promoter-TSS (NR_040269)	-59.0	NR_040270	72997.0	Mm.254833	NR_040269	ENSMUSG00000087403	Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	31.46	23.04	14.8	19.57	24.26	25.72	15.84	21.22	11.24
Merged-chr5-38561744-3	chr5	38561234	38562234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011715)	promoter-TSS (NM_011715)	-139.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	166.47	204.13	246.96	186.9	169.81	241.14	213.35	206.05	174.87
Merged-chrX-49196646-3	chrX	49196131	49197131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	Lx9|LINE|L1	91611.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	25.74	18.43	9.25	19.57	10.26	29.74	26.4	27.86	14.36
Merged-chr7-80711616-3	chr7	80711097	80712097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016721)	TTS (NM_016721)	-22720.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	44.62	39.63	40.7	52.63	35.45	53.05	55.98	30.95	32.48
Merged-chr9-78175974-3	chr9	78175472	78176472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	58.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	358.68	457.1	331.13	403.48	395.6	283.74	456.27	507.17	244.81
Merged-chr17-63500564-3	chr17	63500077	63501077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	3.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	114.41	71.88	109.14	108.63	63.45	69.13	74.99	42.45	36.85
Merged-chr1-55666379-3	chr1	55665857	55666857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	260411.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	28.03	35.94	15.72	17.54	9.8	14.47	51.75	50.85	29.35
Merged-chr18-12761314-3	chr18	12760818	12761818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19963.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	17.16	28.11	12.02	18.22	18.19	38.58	23.24	16.36	18.74
Merged-chr14-63079106-3	chr14	63078597	63079597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	24024.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	267.72	264.03	147.07	290.13	219.73	250.78	295.73	382.92	173.62
Merged-chr1-36573993-3	chr1	36573496	36574496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-15615.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	74.37	78.79	111.92	63.42	62.05	108.51	97.17	100.37	75.57
Merged-chr10-75212071-3	chr10	75211569	75212569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145826)	promoter-TSS (NM_001145826)	-4.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	217.95	120.26	161.87	168.68	99.37	122.98	203.84	103.02	91.81
Merged-chr10-117376510-3	chr10	117375985	117376985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	CpG	488.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	444.49	373.24	347.78	413.6	294.83	276.5	385.51	267.95	226.7
Merged-chr19-7241198-3	chr19	7240693	7241693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027643)	promoter-TSS (NM_027643)	29.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	150.45	89.85	76.77	120.77	93.77	100.47	142.59	89.76	59.33
Merged-chr8-126839255-2	chr8	126838748	126839748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9772.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	147.59	84.32	63.82	159.23	125.49	116.55	126.74	89.76	44.34
Merged-chr2-118804687-3	chr2	118804185	118805185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9318.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	9.72	4.61	11.1	4.72	7.93	4.82	4.22	7.52	1.87
Merged-chr7-135735898-3	chr7	135735420	135736420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19541.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	10.3	11.52	12.95	10.8	14.0	19.29	25.35	27.41	29.98
Merged-chr7-19381942-3	chr7	19381438	19382438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	-101.0	NM_007949	13871.0	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	25.74	14.75	25.9	15.52	20.99	21.7	25.35	9.73	13.74
Merged-chr2-5860608-3	chr2	5860119	5861119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016918, intron 3 of 9)	intron (NM_016918, intron 3 of 9)	2315.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	133.86	98.15	80.47	125.5	105.9	114.14	97.17	110.98	68.07
Merged-chr12-73963719-3	chr12	73963224	73964224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-806.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	20.59	30.41	14.8	45.88	34.06	57.07	61.26	49.96	41.22
Merged-chr11-58301941-3	chr11	58301445	58302445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	61.21	76.95	65.67	56.68	72.78	61.09	66.54	68.54	55.58
Merged-chr1-4867756-3	chr1	4867289	4868289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159750, intron 2 of 9)	RMER6B|LTR|ERVK	9461.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	47.48	59.44	22.2	37.11	28.46	32.96	45.42	39.35	17.49
Merged-chr17-46752304-3	chr17	46751806	46752806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305990)	promoter-TSS (NM_001305990)	-92.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	147.59	137.77	117.47	138.32	96.57	127.8	136.25	124.25	89.31
Merged-chr11-23823421-3	chr11	23822918	23823918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52448.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	97.82	123.03	54.57	105.26	72.78	85.2	62.31	89.76	62.45
Merged-chr11-94993461-3	chr11	94992965	94993965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	2253.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	143.59	154.82	85.1	46.56	52.25	77.16	51.75	67.21	47.46
Merged-chr1-144243659-3	chr1	144243134	144244134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5470.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	48.05	25.8	9.25	36.43	31.26	26.53	9.51	9.29	11.24
Merged-chr2-147012884-3	chr2	147012377	147013377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011917)	promoter-TSS (NM_011917)	-122.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	317.49	329.0	237.71	286.08	279.91	233.9	346.43	338.7	211.09
Merged-chr8-117475161-3	chr8	117474656	117475656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15891.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	7.44	8.75	9.25	6.75	3.73	4.02	8.45	11.05	7.49
Merged-chr16-90220615-3	chr16	90220111	90221111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-131.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	300.9	223.02	218.29	275.28	197.8	196.12	227.08	195.0	177.99
Merged-chr13-59003901-3	chr13	59003411	59004411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	196214.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	195.64	227.63	163.72	225.36	227.66	214.61	259.82	336.05	135.52
Merged-chr8-72296740-1	chr8	72296240	72297240	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-22322.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	112.69	170.49	120.24	169.35	135.75	155.93	113.01	170.23	130.53
Merged-chr19-15537742-3	chr19	15537268	15538268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D|LTR|ERVL	386854.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	16.59	21.66	8.32	18.22	13.53	24.92	35.91	22.55	21.23
Merged-chr10-118818168-3	chr10	118817665	118818665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50738.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	77.23	43.31	33.3	99.86	33.12	57.07	55.98	64.56	22.48
Merged-chr7-114117749-3	chr7	114117241	114118241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025846)	promoter-TSS (NM_025846)	40.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	21.17	7.37	13.87	39.13	10.73	20.09	27.46	10.61	14.99
Merged-chr3-81051738-3	chr3	81051233	81052233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	15317.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	173.9	183.85	105.44	194.99	207.6	141.47	132.02	225.51	102.42
Merged-chr3-158061172-3	chr3	158060670	158061670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 10 of 13)	intron (NM_001359763, intron 10 of 13)	24488.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	44.05	58.52	32.37	43.18	54.58	40.19	57.03	67.21	50.59
Merged-chr17-84701599-1	chr17	84701099	84702099	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18478.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	3.43	7.83	14.8	5.4	4.2	9.65	5.28	6.19	7.49
Merged-chr16-8830584-2	chr16	8830099	8831099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081400, exon 1 of 4)	exon (NM_001081400, exon 1 of 4)	499.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	489.11	515.62	622.49	437.89	518.76	475.04	400.29	390.43	441.54
Merged-chr9-110706993-3	chr9	110706485	110707485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 2 of 6)	intron (NM_028312, intron 2 of 6)	35625.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	40.62	45.62	24.97	43.86	30.32	29.74	66.54	75.17	18.74
Merged-chr5-19888646-3	chr5	19888149	19889149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-18869.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.29	7.83	12.95	8.1	6.06	11.25	6.34	7.07	7.49
Merged-chr2-73491728-3	chr2	73491239	73492239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5986.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	81.8	55.29	37.0	62.75	27.06	49.83	42.25	53.5	20.61
Merged-chr5-150673711-3	chr5	150673207	150674207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346503)	promoter-TSS (NM_001346503)	-120.0	NM_175310	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	41.76	24.42	29.6	38.46	22.39	42.6	44.36	25.2	19.98
Merged-chr15-100616027-3	chr15	100615546	100616546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045701)	promoter-TSS (NR_045701)	384.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	572.05	366.78	411.6	493.89	356.41	340.0	352.77	385.57	271.67
Merged-chr11-23257046-1	chr11	23256546	23257546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1005.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	172.76	129.94	146.14	191.62	123.16	166.38	247.15	227.72	137.4
Merged-chr1-152616238-3	chr1	152615749	152616749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	8968.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	111.55	107.82	61.05	95.14	75.11	93.24	74.99	84.9	57.46
Merged-chr14-47473103-3	chr14	47472580	47473580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030236, intron 1 of 1)	CpG	519.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	445.06	303.2	264.54	431.14	302.3	245.96	326.36	229.48	184.24
Merged-chr7-29984237-2	chr7	29983735	29984735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033355, intron 1 of 9)	intron (NM_001033355, intron 1 of 9)	280.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	141.87	152.06	147.99	144.39	132.95	143.07	85.55	53.5	63.7
Merged-chr10-39134017-3	chr10	39133517	39134517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	-6.0	NM_028006	71924.0	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	13.16	14.75	11.1	26.99	13.06	14.47	24.29	15.48	11.24
Merged-chr8-126593359-3	chr8	126592859	126593859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	77.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	153.88	163.58	220.14	182.17	192.2	233.1	238.7	177.75	141.77
Merged-chr8-125649622-3	chr8	125649114	125650114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20204.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	12.59	4.61	3.7	12.82	11.2	11.25	10.56	4.86	1.25
Merged-chr4-43492952-3	chr4	43492455	43493455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	104.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	370.12	247.44	140.59	292.83	238.85	147.9	217.57	252.04	123.03
Merged-chrX-8074752-3	chrX	8074249	8075249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011514)	promoter-TSS (NM_011514)	11.0	NM_011514	20937.0	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 1	protein-coding	42.33	52.53	62.9	45.88	51.32	50.64	52.81	52.62	28.1
Merged-chr11-113565798-3	chr11	113565295	113566295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166503)	promoter-TSS (NM_001166503)	20.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	3.43	7.83	12.95	19.57	7.46	13.66	11.62	7.07	7.49
Merged-chr17-43569990-1	chr17	43569490	43570490	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1539.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	200.22	255.74	173.89	302.95	243.05	278.91	201.73	157.85	149.89
Merged-chr7-84615239-1	chr7	84614739	84615739	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360579, exon 7 of 7)	3' UTR (NM_001360579, exon 7 of 7)	-9297.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	5.15	10.14	3.7	10.8	11.2	4.82	4.22	4.42	3.75
Merged-chr17-87170557-3	chr17	87170061	87171061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24381.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	8.01	6.45	3.7	8.1	7.0	8.04	5.28	3.98	2.5
Merged-chr10-24160567-3	chr10	24160091	24161091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	11274.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	47.48	43.31	33.3	28.34	26.12	16.08	41.19	31.84	28.73
Merged-chr4-42949774-3	chr4	42949272	42950272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-95.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	356.39	217.49	197.02	261.79	187.07	163.97	262.99	198.09	180.49
Merged-chr5-140748558-3	chr5	140748052	140749052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 5 of 7)	intron (NM_173405, intron 5 of 7)	24425.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	38.9	22.58	34.22	41.83	37.32	36.97	15.84	13.71	8.74
Merged-chr14-75131073-3	chr14	75130595	75131595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	-28.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	161.89	174.18	133.19	155.19	157.21	143.07	195.39	243.63	122.41
Merged-chr6-50132862-2	chr6	50132357	50133357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	21997.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	26.89	34.1	20.35	31.04	28.92	45.82	31.69	21.22	26.85
Merged-chr1-161897385-3	chr1	161896889	161897889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20707.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	73.79	94.0	49.95	95.81	77.44	98.06	80.27	78.26	41.22
Merged-chr2-170147830-3	chr2	170147278	170148278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5103.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	60.64	50.23	72.15	41.83	33.12	51.44	63.37	54.39	68.07
Merged-chr2-158028303-3	chr2	158027811	158028811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291136)	promoter-TSS (NM_001291136)	123.0	NM_029282	75425.0	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	225.39	221.64	197.94	182.85	176.34	181.66	218.63	206.05	118.04
Merged-chr9-99479433-3	chr9	99478951	99479951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028768, exon 22 of 22)	3' UTR (NM_028768, exon 22 of 22)	9030.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	25.17	29.95	29.6	45.21	35.92	59.48	32.74	22.55	11.87
Merged-chr14-79426492-3	chr14	79425996	79426996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024135)	promoter-TSS (NM_001024135)	-15.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	86.38	68.66	67.52	75.57	49.92	54.66	86.61	67.21	50.59
Merged-chr7-131560316-3	chr7	131559807	131560807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009774)	promoter-TSS (NM_009774)	-63.0	NM_009774	12237.0	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	31.46	55.75	51.8	20.24	19.13	53.85	29.57	34.93	22.48
Merged-chr15-78325947-3	chr15	78325461	78326461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007780)	promoter-TSS (NM_007780)	-29.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	82.95	63.13	63.82	93.79	50.85	98.06	107.73	88.43	73.07
Merged-chr16-44139774-3	chr16	44139292	44140292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	1.0	NM_001347239	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	502.84	386.14	307.08	522.23	395.13	299.81	350.65	421.39	203.6
Merged-chr13-75789638-3	chr13	75789148	75790148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50237.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	67.5	88.93	59.2	104.58	83.51	91.63	84.49	79.59	76.82
Merged-chr8-66391797-3	chr8	66391313	66392313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	5512.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	54.35	60.82	46.25	59.38	47.12	48.23	52.81	51.29	60.58
Merged-chr10-93484671-3	chr10	93484179	93485179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008517, exon 19 of 19)	exon (NM_008517, exon 19 of 19)	-4089.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	144.16	138.24	122.09	128.87	116.63	127.0	72.88	70.75	38.1
Merged-chr7-27860583-3	chr7	27860092	27861092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	7.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	62.35	66.81	95.27	68.15	61.58	123.78	106.67	69.42	80.56
Merged-chr1-176816975-3	chr1	176816470	176817470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	MLTR11B|LTR|ERVK	2310.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	73.79	56.68	37.0	80.29	51.32	61.89	70.76	43.33	41.22
Merged-chr7-75699982-3	chr7	75699471	75700471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-148367.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	92.67	159.89	75.85	81.64	71.84	47.42	58.09	70.75	61.2
Merged-chr17-33980704-1	chr17	33980204	33981204	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033305)	promoter-TSS (NR_033305)	-788.0	NR_033305	433100.0	Mm.380381	NM_001013793		AA388235	-	expressed sequence AA388235	ncRNA	8.01	5.99	1.85	2.7	4.2	1.61	180.61	221.08	104.92
Merged-chr7-126975591-3	chr7	126975111	126976111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026638)	promoter-TSS (NM_026638)	235.0	NM_001362232	381922.0	Mm.304201	NM_001362232		Cdiptos	D830044I16Rik	CDIP transferase, opposite strand	protein-coding	64.07	52.07	53.65	49.93	43.85	63.5	55.98	52.18	63.7
Merged-chr12-38778326-3	chr12	38777857	38778857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1725.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	62.35	52.07	31.45	51.28	28.92	30.54	33.8	32.28	28.1
Merged-chr2-105017033-3	chr2	105016542	105017542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145380)	promoter-TSS (NM_145380)	-15.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	110.41	119.8	101.74	124.15	127.36	134.23	104.56	88.88	64.33
Merged-chr16-30587716-4	chr16	30587290	30588290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178069)	promoter-TSS (NM_178069)	-201.0	NM_178069	224092.0	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	301.47	271.86	150.77	284.06	284.1	183.26	284.11	313.05	164.25
Merged-chr6-34866425-3	chr6	34865921	34866921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	3275.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	69.79	56.22	57.35	74.22	51.78	47.42	62.31	69.86	41.84
Merged-chr7-16257986-3	chr7	16257490	16258490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	1348.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	256.85	225.78	167.42	232.1	148.35	182.46	153.15	197.65	123.03
Merged-chr11-53617406-3	chr11	53616910	53617910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027491)	promoter-TSS (NR_027491)	-72.0	NR_027491	16189.0	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	15.45	13.82	5.55	20.24	16.33	48.23	9.51	8.84	6.25
Merged-chr13-67332506-3	chr13	67332012	67333012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177622)	promoter-TSS (NM_177622)	48.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	83.52	123.49	124.87	82.32	83.97	88.42	81.33	115.41	83.06
Merged-chr4-142081928-3	chr4	142081406	142082406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-2392.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	192.21	175.1	124.87	176.1	154.41	144.68	214.41	233.46	119.28
Merged-chr10-83168608-3	chr10	83168101	83169101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	169216.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	56.06	46.08	12.95	82.32	43.39	51.44	29.57	24.32	5.0
Merged-chr4-139191724-3	chr4	139191245	139192245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1154.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	185.92	194.91	150.77	216.58	209.93	149.5	227.08	313.5	163.0
Merged-chr6-91156711-3	chr6	91156191	91157191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144919)	promoter-TSS (NM_144919)	-124.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	11.44	18.43	8.32	17.54	14.0	11.25	17.96	11.05	7.49
Merged-chr11-114818469-3	chr11	114817963	114818963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19539.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	67.5	50.69	29.6	67.47	28.46	29.74	32.74	25.2	21.23
Merged-chr5-77293024-3	chr5	77292528	77293528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17058.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	20.59	23.5	24.97	8.77	15.39	43.4	15.84	11.05	14.99
Merged-chr4-3967749-3	chr4	3967237	3968237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28313.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	5.15	4.61	4.62	2.02	4.2	1.61	1.06	0.44	0.0
Merged-chr4-95053365-3	chr4	95052869	95053869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	299.76	454.79	259.91	290.8	332.62	238.73	332.7	440.84	231.08
Merged-chr12-78919502-3	chr12	78919005	78920005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	6.29	4.61	3.7	8.1	6.53	0.8	7.39	3.54	2.5
Merged-chr7-139248254-3	chr7	139247784	139248784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033206)	promoter-TSS (NM_001033206)	-198.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	420.46	393.05	338.53	363.0	390.47	284.54	428.81	383.8	249.19
Merged-chr3-121597407-3	chr3	121596914	121597914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46071.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	11.44	17.97	11.1	21.59	18.66	12.86	34.85	26.09	26.23
Merged-chr3-75299647-3	chr3	75299140	75300140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29562.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	31.46	23.04	38.85	37.11	16.33	17.68	36.97	32.72	24.98
Merged-chr3-116865582-3	chr3	116865080	116866080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 1 of 16)	(TCTG)n|Simple_repeat|Simple_repeat	3900.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	30.32	34.56	18.5	35.76	29.86	29.74	38.02	48.64	25.61
Merged-chr13-93243286-3	chr13	93242791	93243791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-50874.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	81.23	52.99	39.77	62.07	34.99	52.25	101.39	92.86	49.34
Merged-chr13-107838322-3	chr13	107837863	107838863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	Lx8|LINE|L1	51701.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	171.62	162.66	99.89	150.46	89.57	73.14	122.52	142.82	65.58
Merged-chr5-20945515-3	chr5	20945030	20946030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	-5459.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	103.54	130.4	123.94	83.66	75.57	102.88	137.3	126.9	91.18
Merged-chr10-59221825-3	chr10	59221256	59222256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	91.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	263.14	223.48	199.79	230.08	199.2	187.28	241.87	237.89	136.15
Merged-chrX-7789713-3	chrX	7789298	7790298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290455)	promoter-TSS (NM_001290455)	-195.0	NM_001290455	54645.0	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	151.59	127.18	70.3	91.76	84.9	69.93	126.74	162.28	65.58
Merged-chr16-21289813-3	chr16	21289326	21290326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	7046.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	21.74	23.04	5.55	21.59	20.99	24.11	21.12	17.24	19.98
Merged-chr3-79171756-1	chr3	79171256	79172256	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25881.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	10.3	13.36	19.42	25.64	8.86	22.51	50.7	34.93	28.1
Merged-chr17-17005052-3	chr17	17004553	17005553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59050.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	92.1	111.97	117.47	80.29	77.91	142.27	66.54	61.46	66.2
Merged-chr18-53227761-3	chr18	53227240	53228240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17922.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	68.65	38.71	28.67	45.21	50.85	55.46	99.28	84.9	29.35
Merged-chr7-25282418-1	chr7	25281918	25282918	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027882, exon 1 of 20)	5' UTR (NM_027882, exon 1 of 20)	239.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	173.33	101.83	134.12	135.62	65.78	122.98	174.27	84.45	80.56
Merged-chr5-129787202-3	chr5	129786642	129787642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009838)	promoter-TSS (NM_009838)	111.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	280.88	342.82	305.23	234.8	286.9	258.02	288.34	339.58	178.61
Merged-chr10-116950491-3	chr10	116949967	116950967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	-14.0	NM_001003950	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	29.17	24.88	20.35	34.41	14.93	24.92	34.85	21.22	20.61
Merged-chr13-36531697-3	chr13	36531202	36532202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	MIRc|SINE|MIR	202775.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	37.76	22.12	14.8	26.99	20.06	19.29	32.74	30.07	22.48
Merged-chr13-104178817-3	chr13	104178314	104179314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	-25.0	NM_001361538	81003.0	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	37.18	31.33	21.27	22.94	20.53	35.37	68.65	36.7	25.61
Merged-chr5-21186219-3	chr5	21185715	21186715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175437)	promoter-TSS (NM_175437)	-52.0	NR_153365	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	247.13	202.28	172.97	250.32	172.14	172.01	211.24	191.02	121.16
Merged-chr7-42505771-3	chr7	42505249	42506249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309388)	promoter-TSS (NM_001309388)	4.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	42.33	42.85	49.02	31.04	55.05	41.8	72.88	68.98	39.97
Merged-chr2-104817013-3	chr2	104816505	104817505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123327)	promoter-TSS (NM_001123327)	-309.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	45.19	46.08	54.57	63.42	40.59	50.64	55.98	30.95	44.34
Merged-chr9-48547453-3	chr9	48546952	48547952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52109.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	48.62	49.76	29.6	60.05	47.12	53.85	78.16	61.46	48.09
Merged-chr5-139775751-3	chr5	139775244	139776244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026748)	promoter-TSS (NM_026748)	-66.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	49.77	42.39	47.17	52.63	48.52	47.42	40.14	25.2	16.86
Merged-chr6-42264919-3	chr6	42264413	42265413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	-72.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	75.51	115.66	93.42	87.71	82.57	64.3	104.56	130.44	74.94
Merged-chr1-75192070-3	chr1	75191571	75192571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026187)	promoter-TSS (NM_026187)	-61.0	NR_109938	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	104.69	126.72	113.77	174.08	168.41	156.74	183.78	233.91	124.28
Merged-chr2-158498424-3	chr2	158497929	158498929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291138, exon 30 of 30)	3' UTR (NM_001291138, exon 30 of 30)	-4183.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	55.49	55.29	53.65	51.28	40.59	51.44	12.67	26.09	30.6
Merged-chr1-172423573-3	chr1	172423062	172424062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	47031.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	10.87	9.22	8.32	12.82	7.46	17.68	14.79	11.5	18.11
Merged-chr11-72796184-3	chr11	72795707	72796707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	-19.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	167.04	164.04	138.74	141.69	125.96	110.92	174.27	153.87	83.06
Merged-chr6-53589921-3	chr6	53589384	53590384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	16510.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	197.36	241.91	109.14	190.27	181.47	151.11	160.54	199.86	78.07
Merged-chr1-125434739-3	chr1	125434243	125435243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	984.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	302.62	369.09	281.19	313.74	291.1	224.26	393.96	471.79	222.33
Merged-chr9-7763955-3	chr9	7763426	7764426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133739)	promoter-TSS (NM_133739)	-151.0	NM_133739	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	188.21	145.61	121.17	174.08	148.35	127.8	158.43	135.75	109.29
Merged-chr10-118796744-3	chr10	118796258	118797258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72145.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	309.48	257.12	145.22	292.83	215.53	184.87	241.87	284.76	121.78
Merged-chr6-108756119-3	chr6	108755614	108756614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-26945.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	40.04	21.66	13.87	16.19	10.73	18.49	12.67	9.29	14.99
Merged-chr2-133458898-3	chr2	133458388	133459388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93271.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	50.34	36.86	36.07	68.15	33.59	49.03	40.14	37.58	24.98
Merged-chr9-65587080-3	chr9	65586586	65587586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357526)	promoter-TSS (NM_001357526)	-74.0	NR_151702	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	7.44	9.68	0.0	6.07	5.13	1.61	11.62	7.96	6.25
Merged-chr6-86526669-3	chr6	86526174	86527174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-485.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	827.19	672.74	497.62	745.56	752.48	557.83	685.46	718.96	366.6
Merged-chr4-40703138-3	chr4	40702648	40703648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025545)	promoter-TSS (NM_025545)	46.0	NM_001025444	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	329.5	411.02	281.19	333.31	291.57	288.56	349.6	380.26	202.97
Merged-chr4-24865014-1	chr4	24864514	24865514	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13890.0	NM_001033531	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	4.0	8.75	0.92	10.8	3.27	1.61	4.22	3.54	1.25
Merged-chr19-5488432-3	chr19	5487941	5488941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-62.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	98.39	102.75	124.87	68.82	69.51	79.58	105.62	150.34	93.05
Merged-chr9-13835457-3	chr9	13834972	13835972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176836, intron 5 of 9)	intron (NM_176836, intron 5 of 9)	7756.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	55.49	52.53	43.47	49.25	38.72	45.01	44.36	66.77	46.22
Merged-chr7-128524203-3	chr7	128523681	128524681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013863, intron 1 of 3)	CpG	598.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	399.29	473.69	406.05	381.22	523.89	345.63	395.01	382.03	274.17
Merged-chr17-36271815-3	chr17	36271321	36272321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	183.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	443.91	432.68	376.46	407.53	364.34	254.8	403.46	330.3	202.35
Merged-chr18-36801806-3	chr18	36801310	36802310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027885)	promoter-TSS (NR_027885)	47.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	112.69	142.84	103.59	102.56	128.29	94.85	159.48	179.52	96.8
Merged-chr4-93334717-3	chr4	93334244	93335244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026954, exon 1 of 1)	3' UTR (NM_026954, exon 1 of 1)	767.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	82.95	61.75	74.0	60.72	68.58	114.14	73.93	53.06	27.48
Merged-chr10-17518716-3	chr10	17518215	17519215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204513.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	76.08	76.95	49.95	57.35	46.18	79.58	67.6	64.56	61.2
Merged-chr6-53592513-3	chr6	53592031	53593031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	19157.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	176.19	145.61	93.42	145.06	103.56	87.61	139.42	164.04	85.56
Merged-chr10-8240850-3	chr10	8240365	8241365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	277960.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	40.62	29.03	22.2	35.76	17.26	40.19	44.36	29.63	34.97
Merged-chr9-79793516-3	chr9	79793023	79794023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133718)	promoter-TSS (NM_133718)	-93.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	124.71	119.34	100.82	118.75	119.43	108.51	115.12	148.13	66.82
Merged-chr4-58563668-3	chr4	58563127	58564127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	33.18	11.98	7.4	17.54	12.6	7.23	10.56	7.52	4.37
Merged-chr9-45281076-3	chr9	45280562	45281562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	33.75	13.82	12.95	38.46	20.53	17.68	35.91	19.46	13.12
Merged-chr14-30625564-1	chr14	30625064	30626064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	CpG	644.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	204.22	185.24	212.74	215.23	182.4	263.64	249.26	234.35	153.01
Merged-chr7-127119287-3	chr7	127118784	127119784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	2745.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	84.66	63.59	58.27	99.18	111.03	124.59	188.0	167.14	74.94
Merged-chr2-102899403-3	chr2	102898915	102899915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2250.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	87.52	98.61	97.12	123.47	88.17	94.04	115.12	124.25	109.29
Merged-chr19-4125855-3	chr19	4125341	4126341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025889)	promoter-TSS (NM_025889)	17.0	NM_016666	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	133.29	53.91	73.07	107.28	39.65	59.48	116.18	71.63	52.46
Merged-chr7-131410587-3	chr7	131410080	131411080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025826)	promoter-TSS (NM_025826)	-21.0	NM_025826	66885.0	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	109.26	107.82	74.0	123.47	88.64	94.04	119.35	98.16	38.1
Merged-chr9-41160984-3	chr9	41160485	41161485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2923.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	95.53	76.49	91.57	92.44	57.85	69.93	145.75	127.79	116.79
Merged-chr3-104220522-3	chr3	104220035	104221035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159354)	promoter-TSS (NM_001159354)	-129.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	10.3	4.61	7.4	20.92	13.53	14.47	7.39	10.61	9.37
Merged-chr8-82874338-2	chr8	82873819	82874819	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1D2|LTR|ERVL-MaLR	10963.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	3.43	4.61	3.7	16.19	14.0	24.92	19.01	21.22	12.49
Merged-chr1-131760237-1	chr1	131759737	131760737	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	16215.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	10.87	2.3	1.85	13.49	10.73	6.43	3.17	3.98	0.0
Merged-chr4-141147124-3	chr4	141146619	141147619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-803.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	151.02	157.59	154.47	143.71	154.88	163.97	146.81	179.52	99.3
Merged-chr4-119966316-1	chr4	119965816	119966816	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	151638.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	291.18	225.32	163.72	349.5	259.85	246.76	168.99	173.77	104.92
Merged-chr16-93711710-3	chr16	93711200	93712200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026700)	promoter-TSS (NM_026700)	-207.0	NM_026700	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	55.49	45.62	41.62	62.07	29.39	56.27	60.2	39.35	33.1
Merged-chr16-17531009-3	chr16	17530469	17531469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	83.0	NM_026909	69009.0	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	293.46	211.5	148.92	318.47	287.84	269.27	293.62	199.86	136.77
Merged-chr7-19604503-3	chr7	19604004	19605004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125835)	promoter-TSS (NR_125835)	-18.0	NR_125836	53609.0	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	57.78	47.0	61.05	53.98	46.18	72.34	77.1	53.94	41.22
Merged-chr2-173022368-2	chr2	173021871	173022871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019547, intron 1 of 3)	CpG	469.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	36.04	28.11	18.5	39.81	31.72	40.19	43.3	26.09	18.11
Merged-chr10-117859123-3	chr10	117858634	117859634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-13160.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	196.79	179.71	95.27	182.85	132.02	100.47	210.18	259.55	91.18
Merged-chr14-55745674-3	chr14	55745185	55746185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	-1.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	108.69	102.75	120.24	105.93	91.44	122.98	123.57	125.58	77.44
Merged-chr16-23332931-3	chr16	23332418	23333418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	42448.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	49.77	42.39	27.75	63.42	42.45	73.14	34.85	51.29	45.59
Merged-chr14-55557250-3	chr14	55556797	55557797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2732.0	NR_037572	28199.0	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	113.84	179.71	144.29	128.2	184.74	129.41	134.14	203.4	113.04
Merged-chr4-126254992-3	chr4	126254483	126255483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	1336.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	76.08	52.53	37.92	64.1	31.72	61.89	86.61	72.96	59.33
Merged-chr3-31057478-3	chr3	31056977	31057977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18511.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	120.7	143.3	99.89	126.17	106.83	97.26	162.65	187.92	81.81
Merged-chr8-84066662-3	chr8	84066180	84067180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009055)	promoter-TSS (NM_009055)	-156.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	387.28	277.39	207.19	321.17	207.13	79.58	238.7	223.29	147.39
Merged-chr9-40757946-3	chr9	40757465	40758465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43308.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	45.76	54.83	39.77	51.28	47.12	60.28	79.21	102.14	46.22
Merged-chr4-63403305-3	chr4	63402810	63403810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045514, exon 1 of 22)	5' UTR (NM_001045514, exon 1 of 22)	135.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	212.23	186.16	155.39	176.78	163.28	180.85	200.68	211.8	119.28
Merged-chr4-88094595-3	chr4	88094102	88095102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081184)	promoter-TSS (NM_001081184)	-28.0	NM_001081184	230393.0	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	143.01	94.0	84.17	172.73	152.55	116.55	126.74	122.04	74.94
Merged-chr14-32785913-3	chr14	32785407	32786407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163616)	promoter-TSS (NM_001163616)	-56.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	44.05	49.3	39.77	59.38	45.25	65.91	84.49	68.54	39.97
Merged-chr7-44453496-3	chr7	44452987	44453987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198250, intron 2 of 2)	intron (NM_198250, intron 2 of 2)	11000.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	10.3	11.06	32.37	10.8	6.06	11.25	11.62	5.75	8.74
Merged-chr17-34638105-3	chr17	34637610	34638610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6773.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	110.41	95.84	86.02	75.57	60.18	94.85	88.72	115.85	83.06
Merged-chr1-174053238-3	chr1	174052742	174053742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2867.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	10.3	11.06	3.7	29.01	33.12	36.97	42.25	31.39	33.1
Merged-chr2-128125904-3	chr2	128125397	128126397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207680)	promoter-TSS (NM_207680)	-141.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	74.94	75.57	62.9	77.59	64.84	122.98	80.27	86.22	73.69
Merged-chr1-37496216-3	chr1	37495698	37496698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290801, intron 2 of 14)	intron (NM_001290801, intron 2 of 14)	-7593.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	129.28	160.81	66.6	130.9	132.49	97.26	106.67	175.98	100.55
Merged-chr10-62287848-3	chr10	62287319	62288319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 13 of 21)	intron (NM_010438, intron 13 of 21)	35381.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	16.02	10.14	14.8	12.82	5.6	36.17	10.56	8.84	13.74
Merged-chr4-128667355-3	chr4	128666867	128667867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	12665.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	229.39	208.27	151.69	188.92	190.8	171.21	160.54	240.1	111.17
Merged-chr18-25681487-4	chr18	25681017	25682017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	-1769.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	45.76	43.77	59.2	31.71	45.25	40.19	10.56	9.29	23.73
Merged-chr14-105779482-2	chr14	105778969	105779969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117350.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	4.58	3.69	3.7	5.4	5.13	10.45	2.11	3.1	0.62
Merged-chr4-46554854-3	chr4	46554354	46555354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	11586.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	155.6	127.64	108.22	151.81	99.83	141.47	155.26	160.51	81.19
Merged-chr10-25297136-3	chr10	25296657	25297657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	CpG	2006.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	114.41	67.74	87.87	162.61	96.1	88.42	144.7	83.57	52.46
Merged-chr11-89000103-2	chr11	88999586	89000586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	683.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	335.8	381.07	316.33	371.77	393.27	294.99	396.07	538.56	226.08
Merged-chr7-126897500-3	chr7	126897006	126898006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026827, intron 1 of 5)	intron (NM_026827, intron 1 of 5)	772.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	174.48	265.41	165.57	190.27	180.54	201.75	229.19	347.1	177.99
Merged-chr13-111896520-3	chr13	111895994	111896994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28558.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	34.32	37.78	37.92	32.39	24.72	28.13	15.84	21.67	31.85
Merged-chr3-90383839-3	chr3	90383339	90384339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6099.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	10.87	5.53	5.55	14.17	7.46	3.22	11.62	7.52	14.36
Merged-chr19-23135810-5	chr19	23135328	23136328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5398.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	134.43	171.41	68.45	291.48	325.16	232.29	316.86	379.82	213.59
Merged-chr2-131106149-1	chr2	131105649	131106649	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19384.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	5.72	4.15	5.55	11.47	7.0	9.65	5.28	0.0	3.75
Merged-chr7-105633651-3	chr7	105633154	105634154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285871)	promoter-TSS (NM_001285871)	-83.0	NM_001285871	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	66.93	29.95	45.32	68.82	34.52	61.89	52.81	29.18	36.22
Merged-chr1-165717890-3	chr1	165717397	165718397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9803.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	98.97	111.97	91.57	90.41	102.63	118.16	94.0	87.99	68.07
Merged-chr17-50292888-3	chr17	50292377	50293377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010021, intron 1 of 10)	CpG	743.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	22.88	11.98	12.95	24.29	11.66	8.84	30.63	13.27	11.24
Merged-chr3-20538707-3	chr3	20538194	20539194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-171517.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	32.61	27.65	20.35	28.34	23.79	28.13	23.24	16.8	3.75
Merged-chr17-29841901-3	chr17	29841404	29842404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 9 of 15)	intron (NM_001081160, intron 9 of 15)	45978.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	28.03	27.65	20.35	45.21	42.92	36.17	27.46	33.6	10.62
Merged-chr14-17743852-3	chr14	17743343	17744343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	82883.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	58.92	40.55	50.87	41.83	39.65	20.09	31.69	37.14	22.48
Merged-chr5-31698558-3	chr5	31698062	31699062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	512.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	282.59	296.28	150.77	282.03	265.44	159.15	275.66	400.16	158.63
Merged-chr9-54917181-3	chr9	54916699	54917699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177351)	promoter-TSS (NM_177351)	-91.0	NM_177351	235386.0	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	10.3	3.23	0.0	7.42	0.47	18.49	11.62	1.77	4.37
Merged-chr17-80772677-3	chr17	80772185	80773185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44660.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	10.87	17.97	7.4	28.34	18.66	22.51	25.35	23.43	11.87
Merged-chr8-107030230-3	chr8	107029738	107030738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	33.18	45.16	42.55	61.4	34.06	44.21	57.03	39.35	34.35
Merged-chr2-28583258-3	chr2	28582758	28583758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290484)	promoter-TSS (NM_001290484)	21.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	120.13	83.4	56.42	103.23	82.57	98.87	116.18	115.85	73.69
Merged-chr7-17024977-3	chr7	17024491	17025491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	2923.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	224.25	227.63	182.22	201.07	177.74	178.44	288.34	351.52	150.51
Merged-chr15-79742151-3	chr15	79741651	79742651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045069)	promoter-TSS (NR_045069)	385.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	757.4	505.02	321.88	707.1	475.84	341.61	478.45	451.45	222.96
Merged-chr5-114855417-3	chr5	114854937	114855937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026263, intron 1 of 11)	intron (NM_026263, intron 1 of 11)	1723.0	NM_026263	67593.0	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	58.35	56.22	33.3	65.45	40.12	22.51	63.37	57.04	30.6
Merged-chr12-69425081-3	chr12	69424581	69425581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50469.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	94.39	86.63	69.37	92.44	90.5	110.92	8.45	14.59	8.12
Merged-chr1-54888729-3	chr1	54888229	54889229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	MLT1J|LTR|ERVL-MaLR	37658.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	29.17	23.04	24.05	56.0	41.05	48.23	30.63	23.88	31.85
Merged-chr15-88745523-3	chr15	88745012	88746012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-6199.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	48.62	47.46	17.57	49.25	53.65	57.07	48.58	42.01	31.85
Merged-chr7-125491518-3	chr7	125491024	125492024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026330)	promoter-TSS (NM_026330)	18.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	97.82	147.91	81.4	99.18	106.36	92.44	111.96	110.1	68.7
Merged-chr5-114827638-3	chr5	114827123	114828123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4155.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	8.01	5.99	1.85	18.89	10.73	10.45	9.51	9.29	8.12
Merged-chr8-23237762-3	chr8	23237267	23238267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024240)	promoter-TSS (NM_024240)	-99.0	NM_024240	109145.0	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	41.19	54.37	37.0	30.36	34.52	32.96	44.36	38.03	42.47
Merged-chr8-70839778-3	chr8	70839321	70840321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027560)	promoter-TSS (NM_027560)	-101.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	155.03	129.94	121.17	124.15	96.1	108.51	138.36	141.49	87.43
Merged-chr6-126939603-3	chr6	126939114	126940114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	-27.0	NM_009013	19362.0	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	80.09	86.17	48.1	86.36	57.85	60.28	105.62	126.9	47.46
Merged-chrX-48433696-3	chrX	48433184	48434184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	29448.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	16.02	39.17	38.85	33.74	23.33	36.97	38.02	33.16	32.48
Merged-chr18-30272821-3	chr18	30272316	30273316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181414)	promoter-TSS (NM_181414)	-49.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	28.6	25.8	36.07	29.69	20.06	38.58	23.24	27.86	15.61
Merged-chr2-59645191-1	chr2	59644691	59645691	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1578.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	4.0	5.07	2.77	8.1	4.2	10.45	4.22	3.1	8.12
Merged-chr4-105248206-5	chr4	105247712	105248712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90865.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	248.84	222.1	130.42	203.76	158.15	193.71	214.41	263.09	123.66
Merged-chr1-166430082-3	chr1	166429592	166430592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20264.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	21.74	33.64	10.17	29.69	34.99	28.94	78.16	52.62	17.49
Merged-chr18-36194822-3	chr18	36194315	36195315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	2345.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	61.21	87.55	50.87	36.43	25.66	39.39	52.81	53.5	33.1
Merged-chr2-71338277-3	chr2	71337774	71338774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	29280.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	45.76	44.7	46.25	45.21	48.52	41.8	64.43	61.9	41.84
Merged-chr16-24577984-3	chr16	24577497	24578497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	48683.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	14.3	12.44	12.95	19.57	12.13	9.65	9.51	10.17	5.0
Merged-chr17-7869294-3	chr17	7868792	7869792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56708.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	12.59	10.6	9.25	23.62	6.06	16.08	11.62	7.07	31.85
Merged-chr1-161351145-3	chr1	161350655	161351655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-44283.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	20.02	11.06	5.55	16.87	7.46	4.82	6.34	2.21	3.75
Merged-chr13-56184499-3	chr13	56184022	56185022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5637.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	90.96	86.17	87.87	117.4	71.84	99.67	63.37	80.92	56.83
Merged-chr2-155930120-3	chr2	155929631	155930631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018888, exon 1 of 10)	5' UTR (NM_018888, exon 1 of 10)	179.0	NM_001355443	56046.0	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	51.48	58.06	85.1	60.05	54.58	49.83	53.87	54.83	34.35
Merged-chr7-28442961-3	chr7	28442462	28443462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 3 of 6)	intron (NM_001039192, intron 3 of 6)	2025.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	131.0	134.55	92.5	138.99	69.04	65.91	98.23	99.93	75.57
Merged-chr18-68059579-3	chr18	68059071	68060071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126398.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	68.07	38.25	14.8	74.89	36.39	22.51	26.4	19.9	21.23
Merged-chr2-73512212-3	chr2	73511686	73512686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	17301.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	136.72	135.93	82.32	108.63	93.3	122.98	171.1	150.34	98.68
Merged-chr5-143909904-3	chr5	143909422	143910422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008886)	promoter-TSS (NM_008886)	-79.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	94.96	93.54	62.9	89.06	124.09	127.0	114.07	109.22	53.71
Merged-chr11-3153181-2	chr11	3152679	3153679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	29158.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	45.19	60.82	64.75	46.56	67.64	115.75	2.11	0.88	105.55
Merged-chrX-48594602-3	chrX	48594107	48595107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166648)	promoter-TSS (NM_001166648)	12.0	NM_001166648	208968.0	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	14.3	17.05	15.72	19.57	16.33	23.31	22.18	20.34	21.86
Merged-chr17-25985777-3	chr17	25985284	25986284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347334)	promoter-TSS (NM_001347334)	12.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	93.24	106.9	96.2	128.87	122.23	127.0	142.59	133.53	77.44
Merged-chr5-35893344-1	chr5	35892844	35893844	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027373)	promoter-TSS (NM_027373)	25.0	NM_027373	70292.0	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	1.14	0.92	1.85	4.72	4.67	1.61	1.06	0.0	0.0
Merged-chr4-145222206-3	chr4	145221706	145222706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 8 of 9)	intron (NM_011610, intron 8 of 9)	24664.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	53.2	43.77	61.97	77.59	59.25	56.27	72.88	62.79	41.22
Merged-chr4-63562385-3	chr4	63561894	63562894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	2167.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	61.78	61.28	63.82	82.99	55.98	62.7	108.79	77.82	54.33
Merged-chr16-24393870-3	chr16	24393391	24394391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037954)	promoter-TSS (NR_037954)	-236.0	NR_037954	68841.0	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	270.01	218.87	203.49	233.45	184.74	146.29	264.05	133.53	137.4
Merged-chr7-4080726-3	chr7	4080212	4081212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-17508.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	56.06	59.44	48.1	76.92	57.85	54.66	67.6	71.19	58.08
Merged-chr13-116987468-3	chr13	116986975	116987975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	LTR31|LTR|ERV1	38041.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	71.51	38.71	42.55	21.59	7.46	10.45	14.79	12.38	8.12
Merged-chr5-138171200-3	chr5	138170689	138171689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	77.0	NM_001356577	17220.0	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	66.36	63.59	101.74	42.51	55.05	93.24	91.89	74.73	70.57
Merged-chr13-23885738-3	chr13	23885247	23886247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	15474.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	8.58	10.6	1.85	7.42	5.6	3.22	3.17	4.86	2.5
Merged-chr9-21015968-3	chr9	21015459	21016459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010493)	promoter-TSS (NM_010493)	19.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	288.32	207.81	172.97	272.59	193.13	178.44	258.77	252.04	180.49
Merged-chr7-110381724-1	chr7	110381224	110382224	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	160021.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	25.74	17.05	29.6	22.27	20.99	39.39	41.19	52.62	37.47
Merged-chr15-63616927-3	chr15	63616379	63617379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137271.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	100.68	105.06	101.74	178.13	109.63	93.24	107.73	103.02	40.59
Merged-chr14-75192951-3	chr14	75192437	75193437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-49350.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	73.79	89.39	75.85	66.12	51.78	61.09	74.99	55.27	51.21
Merged-chr6-146776828-3	chr6	146776311	146777311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346666, exon 12 of 12)	3' UTR (NM_001346666, exon 12 of 12)	-28719.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	4.58	4.15	3.7	12.82	5.13	8.04	12.67	3.54	1.25
Merged-chr19-55232381-3	chr19	55231879	55232879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	8857.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	133.29	112.43	37.0	168.0	77.91	65.91	143.64	107.45	51.84
Merged-chr10-31313065-1	chr10	31312565	31313565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	-340.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	54.35	42.39	48.1	43.86	38.72	49.83	35.91	34.93	42.47
Merged-chr3-61416105-3	chr3	61415609	61416609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51602.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	240.26	281.54	171.12	300.92	248.65	195.32	262.99	347.54	133.65
Merged-chr5-113672642-3	chr5	113672159	113673159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22269.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	25.74	47.0	27.75	45.88	38.72	50.64	55.98	35.37	42.47
Merged-chr9-44435969-3	chr9	44435468	44436468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033469, exon 3 of 5)	exon (NM_001033469, exon 3 of 5)	4900.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	9.15	6.45	0.0	6.07	6.06	16.08	7.39	1.77	3.75
Merged-chr14-25789415-3	chr14	25788913	25789913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20557.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	13.73	13.36	19.42	17.54	7.0	10.45	12.67	5.31	8.74
Merged-chr2-29125518-2	chr2	29125040	29126040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_198033, exon 1 of 26)	5' UTR (NM_198033, exon 1 of 26)	548.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	129.28	83.86	68.45	105.26	99.83	124.59	125.69	99.05	51.21
Merged-chr15-36282552-1	chr15	36282052	36283052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357631, intron 1 of 7)	CpG	595.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	114.98	105.98	179.44	110.65	142.29	142.27	103.51	92.41	98.68
Merged-chr6-92092253-3	chr6	92091753	92092753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347342)	promoter-TSS (NM_001347342)	-180.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	232.83	211.04	292.29	240.2	187.07	223.45	278.83	190.57	181.74
Merged-chr18-80169574-3	chr18	80169076	80170076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16663.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	219.67	242.37	186.84	219.28	227.19	217.02	268.27	293.6	162.38
Merged-chr2-11197200-3	chr2	11196687	11197687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	24805.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	49.2	43.31	31.45	35.76	18.66	21.7	42.25	32.28	40.59
Merged-chr19-57361656-1	chr19	57361156	57362156	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040316)	promoter-TSS (NR_040316)	647.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	151.02	115.66	137.82	120.1	107.3	141.47	140.47	106.12	76.82
Merged-chr8-35466915-2	chr8	35466401	35467401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026067, exon 7 of 7)	3' UTR (NM_026067, exon 7 of 7)	28632.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	97.82	107.36	46.25	105.93	88.17	61.89	6.34	15.03	3.75
Merged-chr1-120504831-3	chr1	120504340	120505340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010766, exon 1 of 17)	5' UTR (NM_010766, exon 1 of 17)	184.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	13.16	12.9	21.27	10.8	4.2	9.65	21.12	12.38	21.23
Merged-chr19-32276998-3	chr19	32276485	32277485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-65972.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	37.18	19.81	11.1	39.13	27.06	12.86	23.24	15.48	6.87
Merged-chr6-125096148-4	chr6	125095675	125096675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	12.0	NM_145979	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	129.28	111.05	147.99	113.35	83.04	113.33	102.45	100.37	74.94
Merged-chr2-126476289-3	chr2	126475794	126476794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15259.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	159.6	154.82	118.39	224.01	175.41	189.69	78.16	121.6	86.18
Merged-chr7-92637133-3	chr7	92636654	92637654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028665)	promoter-TSS (NM_028665)	-12.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	237.4	342.82	167.42	194.32	226.72	162.37	170.05	256.46	134.27
Merged-chr7-90443631-3	chr7	90443072	90444072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145151, exon 1 of 1)	exon (NM_145151, exon 1 of 1)	791.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	200.22	175.1	151.69	213.89	143.22	171.21	209.12	138.84	107.42
Merged-chr4-132274353-3	chr4	132273844	132274844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025579)	promoter-TSS (NM_025579)	-31.0	NM_025579	66464.0	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	152.74	121.19	164.64	142.37	125.49	156.74	126.74	144.15	104.3
Merged-chr8-81015023-3	chr8	81014512	81015512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027554)	promoter-TSS (NM_027554)	-106.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	394.14	500.87	309.86	323.86	379.74	290.17	345.37	405.91	266.67
Merged-chr17-84146028-3	chr17	84145525	84146525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41922.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	57.78	52.07	30.52	51.95	30.32	57.07	20.07	20.78	41.22
Merged-chr8-120539535-3	chr8	120539025	120540025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106159)	TTS (NR_106159)	829.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	157.89	150.68	124.87	171.38	174.94	159.15	235.53	224.62	112.42
Merged-chr14-77836951-3	chr14	77836465	77837465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 5 of 5)	intron (NM_025384, intron 5 of 5)	37952.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	124.14	104.14	88.8	132.24	115.23	110.12	158.43	176.42	123.66
Merged-chr1-128004587-3	chr1	128004088	128005088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	B4A|SINE|B4	97883.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	8.01	10.6	9.25	12.14	12.6	33.76	13.73	13.27	14.36
Merged-chr4-138325752-3	chr4	138325296	138326296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026880, intron 1 of 7)	CpG	500.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	159.03	151.6	147.99	162.61	162.34	164.78	222.86	153.43	113.66
Merged-chr4-152325778-3	chr4	152325283	152326283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102292)	promoter-TSS (NR_102292)	57.0	NR_102291	19934.0	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	125.85	143.76	106.37	118.08	125.02	153.52	137.3	121.15	89.93
Merged-chr1-93342865-3	chr1	93342370	93343370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-82.0	NM_080850	269224.0	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	14.3	11.52	11.1	19.57	20.53	24.11	27.46	19.01	13.12
Merged-chr11-121421340-3	chr11	121420852	121421852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181420)	promoter-TSS (NM_181420)	-21.0	NM_181420	238024.0	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	24.6	16.13	5.55	37.11	25.19	36.97	26.4	25.65	14.99
Merged-chr11-74494580-2	chr11	74494094	74495094	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	95564.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	33.75	31.33	31.45	49.93	45.72	63.5	51.75	66.77	41.22
Merged-chr7-140912434-3	chr7	140911945	140912945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6381.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	6.29	6.91	3.7	6.75	6.06	7.23	9.51	4.86	8.74
Merged-chr17-56009224-3	chr17	56008728	56009728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026530)	promoter-TSS (NM_026530)	27.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	51.48	54.37	59.2	46.56	45.72	75.56	39.08	37.58	33.72
Merged-chr17-54003739-3	chr17	54003224	54004224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-13093.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	10.87	21.2	9.25	19.57	18.66	24.92	19.01	15.92	21.86
Merged-chr7-48908906-3	chr7	48908421	48909421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27325.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	45.76	38.25	56.42	45.88	38.72	51.44	40.14	44.22	29.35
Merged-chr5-113908867-3	chr5	113908387	113909387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-181.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	88.67	88.47	86.02	127.52	74.64	112.53	139.42	90.2	81.81
Merged-chr5-124025312-3	chr5	124024810	124025810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	6950.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	184.77	130.86	94.35	160.58	129.69	144.68	146.81	152.11	91.18
Merged-chr10-125390187-3	chr10	125389690	125390690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61227.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	143.59	144.69	104.52	154.51	105.43	135.84	189.06	226.39	119.91
Merged-chr8-70172384-3	chr8	70171877	70172877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293797)	promoter-TSS (NM_001293797)	-31.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	50.91	42.39	48.1	37.11	23.33	14.47	41.19	26.97	25.61
Merged-chr16-75961251-3	chr16	75960748	75961748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39536.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	79.52	76.49	61.05	53.98	44.78	68.32	66.54	85.78	50.59
Merged-chr6-124730018-3	chr6	124729517	124730517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	3137.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	98.39	83.86	80.47	128.2	72.31	120.57	116.18	135.3	63.08
Merged-chr11-115420045-3	chr11	115419554	115420554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183285)	promoter-TSS (NM_183285)	-72.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	127.0	64.97	81.4	113.35	67.64	94.04	129.91	80.92	48.09
Merged-chr11-68417988-3	chr11	68417487	68418487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-14138.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.86	16.59	11.1	24.96	12.13	14.47	6.34	10.61	6.25
Merged-chr9-109082451-3	chr9	109081942	109082942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025689)	promoter-TSS (NM_025689)	-54.0	NM_025689	66658.0	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	79.52	84.78	100.82	96.48	86.77	90.83	103.51	98.6	66.82
Merged-chr4-151841926-1	chr4	151841426	151842426	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	19842.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	78.37	98.15	49.02	56.68	50.85	36.97	69.71	59.25	48.09
Merged-chr15-6334974-3	chr15	6334471	6335471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	35182.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	33.75	42.39	14.8	39.81	30.32	35.37	20.07	28.74	25.61
Merged-chr17-42876597-3	chr17	42876084	42877084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009847)	promoter-TSS (NM_009847)	-160.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	321.49	263.11	231.24	271.24	207.6	208.18	260.88	211.8	133.02
Merged-chr18-9735015-3	chr18	9734497	9735497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	27349.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	29.75	35.94	29.6	48.58	34.52	27.33	15.84	18.13	26.23
Merged-chr11-21091172-3	chr11	21090688	21091688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023324)	promoter-TSS (NM_023324)	-136.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	165.32	132.71	126.72	120.77	104.03	120.57	134.14	90.2	86.18
Merged-chr11-69838445-3	chr11	69837944	69838944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026982)	promoter-TSS (NM_026982)	-81.0	NM_026982	69186.0	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	224.82	205.51	104.52	246.95	227.66	155.13	192.23	201.19	92.43
Merged-chr2-13558801-3	chr2	13558295	13559295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14131.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	72.65	58.52	25.9	64.77	40.59	30.54	42.25	32.28	37.47
Merged-chr1-4807781-3	chr1	4807284	4808284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008866)	promoter-TSS (NM_008866)	-39.0	NM_001355712	18777.0	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	APT-1|Gm39587|LPL-I|Pla1a	lysophospholipase 1	protein-coding	117.27	93.54	99.89	121.45	76.51	90.83	104.56	84.01	56.21
Merged-chr10-34208348-3	chr10	34207849	34208849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-798.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	62.93	86.17	66.6	82.99	53.65	89.22	64.43	73.4	77.44
Merged-chr17-5316746-3	chr17	5316247	5317247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 11 of 19)	intron (NM_001085355, intron 11 of 19)	102020.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.58	15.67	15.72	21.59	12.6	11.25	9.51	19.46	7.49
Merged-chr4-151057561-3	chr4	151057063	151058063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009498, intron 1 of 4)	CpG	390.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	383.85	393.05	307.08	365.7	380.67	260.43	328.47	317.48	184.86
Merged-chr11-83302692-3	chr11	83302162	83303162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001035854)	promoter-TSS (NM_001035854)	-35.0	NM_027915	71770.0	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979|AP105B	adaptor-related protein complex 2, beta 1 subunit	protein-coding	346.09	393.51	223.84	319.82	294.37	245.96	277.78	290.06	203.6
Merged-chr15-62046486-3	chr15	62045994	62046994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	7237.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	70.93	57.6	81.4	67.47	64.38	63.5	73.93	102.14	40.59
Merged-chr5-114690346-3	chr5	114689830	114690830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	605.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	207.66	168.65	235.86	210.51	154.41	239.53	242.92	213.57	137.4
Merged-chr10-119001158-3	chr10	119000656	119001656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49343.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	33.18	28.11	17.57	49.93	45.72	20.09	33.8	35.37	5.0
Merged-chr4-132567583-3	chr4	132567082	132568082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	3515.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	112.12	62.67	25.9	138.32	82.57	51.44	91.89	68.09	20.61
Merged-chr19-8212639-3	chr19	8212152	8213152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172776, intron 2 of 9)	L1_Mus2|LINE|L1	6248.0	NM_172776	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	7.44	14.75	3.7	14.17	3.73	19.29	6.34	12.38	11.24
Merged-chr1-191071689-3	chr1	191071165	191072165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	8644.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	264.29	268.64	225.69	236.83	222.99	188.89	297.84	347.99	134.9
Merged-chr5-110970478-4	chr5	110969982	110970982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	B1F|SINE|Alu	-33662.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	80.66	81.56	79.55	86.36	54.11	68.32	73.93	59.69	41.84
Merged-chr11-83534850-3	chr11	83534349	83535349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4331.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	239.69	183.39	116.54	188.92	108.23	81.18	134.14	172.45	86.81
Merged-chr2-11739738-3	chr2	11739225	11740225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34013.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	52.06	71.88	48.1	56.0	45.25	64.3	55.98	62.35	54.96
Merged-chr3-94310181-3	chr3	94309700	94310700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029431)	promoter-TSS (NM_029431)	68.0	NM_029431	75778.0	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	33.18	48.84	50.87	39.81	41.52	34.56	51.75	53.5	33.1
Merged-chr19-29101310-3	chr19	29100811	29101811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021525)	promoter-TSS (NM_021525)	-64.0	NM_021525	59028.0	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	44.05	35.94	44.4	46.56	48.05	52.25	45.42	49.08	14.99
Merged-chr10-99211659-3	chr10	99211171	99212171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51560.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	85.24	107.36	52.72	94.46	72.78	45.82	136.25	110.54	41.22
Merged-chr17-24251446-3	chr17	24250948	24251948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007634)	promoter-TSS (NM_007634)	-39.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	69.22	66.81	60.12	37.78	25.19	16.88	132.02	103.91	83.69
Merged-chr8-71396708-3	chr8	71396198	71397198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181418)	promoter-TSS (NM_181418)	-157.0	NM_026636	68251.0	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	69.79	59.44	42.55	43.86	61.58	52.25	59.15	46.87	29.98
Merged-chr16-97962715-3	chr16	97962213	97963213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081684)	promoter-TSS (NM_001081684)	-91.0	NM_001320385	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	384.99	381.53	219.21	354.9	351.75	240.33	306.29	291.39	141.14
Merged-chr7-24972729-3	chr7	24972222	24973222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010261)	promoter-TSS (NM_010261)	6.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	174.48	208.27	172.97	126.85	170.28	163.17	138.36	160.06	134.27
Merged-chr1-65090585-3	chr1	65090155	65091155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-8365.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	8.58	8.75	7.4	13.49	15.39	15.27	17.96	20.34	6.87
Merged-chr8-46932067-3	chr8	46931552	46932552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-54835.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	219.67	214.26	160.94	172.05	153.01	157.54	177.44	213.12	121.16
Merged-chr6-134066293-3	chr6	134065792	134066792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	MLT2B2|LTR|ERVL	30592.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	81.8	101.83	53.65	108.63	83.97	94.85	70.76	80.03	54.33
Merged-chr7-100706419-5	chr7	100705938	100706938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-197.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	66.93	67.27	86.95	48.58	54.11	61.89	72.88	63.67	43.72
Merged-chrX-17514252-3	chrX	17513713	17514713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57794.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	42.9	48.84	26.82	33.06	33.12	32.15	24.29	28.3	14.36
Merged-chr2-157007046-3	chr2	157006564	157007564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025853)	promoter-TSS (NM_025853)	11.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	189.92	152.06	25.9	170.7	121.76	93.24	134.14	119.83	46.84
Merged-chr15-40060475-1	chr15	40059975	40060975	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155348, intron 2 of 2)	intron (NR_155348, intron 2 of 2)	15287.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	9.72	3.23	1.85	9.45	4.2	7.23	14.79	6.63	3.75
Merged-chr6-116131924-3	chr6	116131431	116132431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MIR|SINE|MIR	61443.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	54.92	103.68	31.45	56.0	48.05	57.87	82.38	77.38	53.71
Merged-chr8-70752524-3	chr8	70752011	70753011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2168.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	175.05	135.93	89.72	242.22	179.14	151.92	195.39	207.82	108.04
Merged-chr4-123718266-3	chr4	123717792	123718792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002445).2	promoter-TSS (NR_002445).2	-106.0	NM_001030274	595136.0	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	76.66	81.56	64.75	61.4	71.38	105.3	95.06	101.26	40.59
Merged-chr6-125131854-3	chr6	125131365	125132365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138747)	promoter-TSS (NM_138747)	-18.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	177.91	192.61	152.62	165.31	181.47	139.06	157.37	202.51	100.55
Merged-chr1-151344408-3	chr1	151343883	151344883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-103.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	234.54	212.88	191.47	257.07	198.73	209.79	236.59	268.4	128.03
Merged-chr1-175625652-3	chr1	175625211	175626211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-76.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	106.4	117.96	102.67	133.59	111.5	99.67	110.9	113.64	61.83
Merged-chr7-73535028-1	chr7	73534528	73535528	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	6718.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	65.79	59.9	51.8	41.16	47.58	55.46	58.09	56.6	30.6
Merged-chr14-57366945-3	chr14	57366458	57367458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	31525.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	22.88	20.74	20.35	25.64	36.85	32.96	45.42	38.91	9.99
Merged-chr16-64851858-3	chr16	64851334	64852334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	-111.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	114.98	117.5	91.57	155.19	86.3	118.16	136.25	94.62	73.69
Merged-chr13-34078055-3	chr13	34077556	34078556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-48.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	210.52	172.33	147.99	207.81	146.48	143.88	156.32	169.35	113.66
Merged-chr2-113304787-1	chr2	113304287	113305287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19055.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	1.14	2.76	5.55	4.05	3.73	0.0	2.11	2.21	1.25
Merged-chrX-56598103-3	chrX	56597602	56598602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146234)	promoter-TSS (NM_146234)	-183.0	NM_146234	236792.0	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	35.47	47.92	33.3	26.99	38.72	61.09	31.69	42.45	28.1
Merged-chr8-70673263-3	chr8	70672767	70673767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015816)	promoter-TSS (NM_015816)	36.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	249.42	234.08	184.99	202.42	225.79	182.46	227.08	249.82	131.15
Merged-chr17-31295281-3	chr17	31294775	31295775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153062)	promoter-TSS (NM_153062)	-208.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	42.33	31.33	55.5	59.38	45.25	48.23	73.93	80.47	74.94
Merged-chr9-44515397-4	chr9	44514877	44515877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	11044.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	77.8	87.55	69.37	76.24	60.18	101.28	85.55	115.41	61.83
Merged-chr12-44210229-3	chr12	44209711	44210711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013760)	promoter-TSS (NM_013760)	-102.0	NR_049203	100885842.0		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	230.54	198.6	182.22	246.27	223.92	200.14	216.52	235.68	123.03
Merged-chr8-116978903-3	chr8	116978410	116979410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357254)	promoter-TSS (NM_001357254)	49.0	NM_027103	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	101.25	132.71	123.94	105.26	111.03	129.41	95.06	90.2	78.07
Merged-chr3-79629493-3	chr3	79628982	79629982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025794)	promoter-TSS (NM_025794)	403.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	46.91	49.76	70.3	58.7	47.12	45.82	52.81	40.68	18.74
Merged-chr11-51805393-3	chr11	51804894	51805894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42|LTR|ERVK	41731.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	39.47	31.33	19.42	19.57	33.12	40.19	42.25	34.93	14.99
Merged-chr6-17409875-3	chr6	17409387	17410387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR81A|LTR|Gypsy	-54070.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	16.02	13.36	13.87	27.66	16.79	14.47	29.57	26.53	20.61
Merged-chr5-147431171-3	chr5	147430697	147431697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	CpG	1041.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	290.03	236.84	289.51	214.56	145.55	215.42	231.3	119.83	147.39
Merged-chr13-44419259-3	chr13	44418759	44419759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20468.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	72.08	71.42	39.77	64.77	69.51	44.21	90.83	68.09	38.72
Merged-chr8-18595586-3	chr8	18595099	18596099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173189, exon 1 of 14)	exon (NM_173189, exon 1 of 14)	468.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	68.07	58.52	69.37	74.22	69.51	72.34	77.1	72.07	25.61
Merged-chr8-69008049-3	chr8	69007551	69008551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80685.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	70.93	59.9	47.17	62.75	40.59	59.48	77.1	53.06	41.22
Merged-chr3-94582707-3	chr3	94582208	94583208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	8.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	211.66	219.79	202.56	258.42	184.27	215.42	248.2	202.51	139.27
Merged-chr4-97757430-3	chr4	97756937	97757937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-20189.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	78.37	66.35	49.95	79.62	63.91	84.4	80.27	82.24	51.84
Merged-chr19-46305658-3	chr19	46305171	46306171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177370)	promoter-TSS (NM_001177370)	-24.0	NM_019408	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	576.06	460.78	342.23	462.18	404.93	389.84	403.46	512.91	267.92
Merged-chr4-124802513-3	chr4	124802024	124803024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-25.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	228.25	210.12	180.37	168.0	156.28	167.19	166.88	216.66	139.89
Merged-chr15-64312805-3	chr15	64312314	64313314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276462)	promoter-TSS (NM_001276462)	-141.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	111.55	97.69	89.72	138.99	92.37	114.14	122.52	90.2	56.21
Merged-chr2-106974470-3	chr2	106973970	106974970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025102)	promoter-TSS (NM_001025102)	-73.0	NM_001025102	212772.0	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	48.05	43.77	33.3	45.21	49.45	49.83	53.87	47.31	22.48
Merged-chr13-41019155-3	chr13	41018662	41019662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2912.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	62.35	64.97	66.6	81.64	55.98	80.38	76.05	116.29	74.32
Merged-chr6-7844623-3	chr6	7844094	7845094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-630.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	72.08	45.62	58.27	76.24	58.31	49.83	57.03	38.47	31.85
Merged-chr19-43674989-3	chr19	43674469	43675469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	-88.0	NM_001356944	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	204.8	186.62	234.01	170.7	157.68	183.26	201.73	178.64	152.38
Merged-chr17-57248498-3	chr17	57248002	57249002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-813.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	66.93	59.9	51.8	54.65	34.99	81.18	69.71	58.81	72.45
Merged-chr11-29694253-3	chr11	29693725	29694725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	451.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	149.88	96.3	123.02	103.23	65.31	124.59	124.63	87.99	89.31
Merged-chr9-35278059-3	chr9	35277556	35278556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3049.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	47.48	55.75	49.95	28.34	26.12	34.56	26.4	30.95	19.98
Merged-chr18-46525998-3	chr18	46525520	46526520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173423)	promoter-TSS (NM_173423)	-49.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	245.98	178.32	207.19	207.81	149.28	151.11	179.55	168.47	145.51
Merged-chr19-21032041-3	chr19	21031503	21032503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72707.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	77.23	66.81	53.65	79.62	63.91	61.89	73.93	91.09	79.94
Merged-chr5-144126197-3	chr5	144125710	144126710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081109, intron 1 of 13)	intron (NM_001081109, intron 1 of 13)	25774.0	NM_001081109	231876.0	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	10.3	5.53	1.85	14.17	4.67	9.65	12.67	2.21	5.0
Merged-chr19-6992661-3	chr19	6992162	6993162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357001)	promoter-TSS (NM_001357001)	-80.0	NM_001357000	57431.0	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	45.19	29.03	35.15	45.21	18.66	32.15	48.58	38.91	24.98
Merged-chr5-123573033-3	chr5	123572503	123573503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029929)	promoter-TSS (NM_029929)	12.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	133.29	121.19	95.27	128.2	174.94	95.65	162.65	199.86	83.69
Merged-chr10-20312954-3	chr10	20312474	20313474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025392, intron 1 of 12)	CpG	505.0	NM_001025393	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	388.42	404.11	286.74	297.55	330.75	257.21	289.39	344.89	210.47
Merged-chr10-111422816-3	chr10	111422333	111423333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50394.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.29	10.6	8.32	6.75	10.26	25.72	19.01	17.69	9.99
Merged-chr11-69901690-3	chr11	69901207	69902207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-109.0	NM_001291118	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	271.73	200.44	177.59	192.97	151.15	147.9	192.23	174.21	134.27
Merged-chr16-29735820-3	chr16	29735313	29736313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	156479.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	20.02	9.68	2.77	5.4	6.06	3.22	11.62	8.84	4.37
Merged-chr1-166345787-3	chr1	166345268	166346268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33399.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	76.66	82.48	32.37	62.75	64.84	57.87	66.54	66.33	53.08
Merged-chr17-86495066-3	chr17	86494557	86495557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 9 of 14)	intron (NM_011104, intron 9 of 14)	-207879.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	12.01	22.12	17.57	15.52	14.46	13.66	9.51	7.07	14.36
Merged-chr18-60763064-3	chr18	60762613	60763613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11483.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	147.59	147.45	79.55	137.64	116.16	123.78	110.9	116.73	66.82
Merged-chr10-17733244-3	chr10	17732749	17733749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10021.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.43	5.99	5.55	5.4	5.13	1.61	8.45	0.44	3.75
Merged-chr1-94035242-4	chr1	94034710	94035710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14717.0	NM_001310769	241159.0	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	5.72	7.83	1.85	10.8	4.67	11.25	5.28	2.65	2.5
Merged-chr8-77451643-3	chr8	77451139	77452139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-65417.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	185.35	149.75	82.32	210.51	186.14	135.84	141.53	162.28	70.57
Merged-chr13-42328736-3	chr13	42328241	42329241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27265.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	29.75	30.41	8.32	29.01	15.39	16.88	39.08	28.74	25.61
Merged-chr2-80025834-3	chr2	80025344	80026344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13058.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	145.3	117.04	50.87	109.98	121.29	113.33	125.69	154.32	108.67
Merged-chr2-173021935-3	chr2	173021434	173022434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019547)	promoter-TSS (NM_019547)	32.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	34.9	30.87	16.65	41.16	30.32	45.01	45.42	28.3	21.23
Merged-chr16-31201317-3	chr16	31200824	31201824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030138)	promoter-TSS (NM_030138)	-86.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	198.5	156.67	138.74	147.09	146.02	168.8	129.91	186.59	141.14
Merged-chr13-108041606-3	chr13	108041098	108042098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2876.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	24.03	25.34	13.87	29.69	14.0	15.27	30.63	27.41	21.86
Merged-chr10-95151291-3	chr10	95150781	95151781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-5456.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	148.16	135.47	55.5	158.56	105.9	99.67	95.06	130.0	53.08
Merged-chrUn_JH584304-61247-1	chrUn_JH584304	60747	61747	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1558.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	43.3	45.1	0.0
Merged-chr2-60113878-3	chr2	60113372	60114372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	L1MA5A|LINE|L1	11868.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	49.2	44.7	28.67	56.68	40.12	37.78	47.53	50.85	31.85
Merged-chr2-145888573-3	chr2	145888075	145889075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028724)	TTS (NM_028724)	-14666.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	175.05	170.49	131.34	183.52	147.42	127.0	207.01	196.76	133.65
Merged-chr11-3186780-3	chr11	3186297	3187297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6666.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	44.62	82.94	112.84	51.28	85.84	121.37	64.43	52.62	136.77
Merged-chr16-35869281-3	chr16	35868779	35869779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	2103.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	235.69	254.35	131.34	205.79	220.66	155.13	191.17	283.43	108.67
Merged-chr18-63691956-1	chr18	63691456	63692456	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016792, intron 1 of 7)	CpG	403.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	233.4	321.17	221.99	259.09	333.55	274.09	245.04	268.4	200.47
Merged-chr2-158174074-3	chr2	158173563	158174563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17945.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	124.14	106.44	98.05	192.97	138.09	141.47	144.7	114.08	79.32
Merged-chr7-43250881-3	chr7	43250394	43251394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	36855.0	NM_001177525	100170401.0		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	11.44	11.06	15.72	6.07	2.8	4.02	5.28	3.54	5.0
Merged-chr11-116030374-4	chr11	116029885	116030885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	69.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	855.79	602.24	350.56	763.11	661.04	348.84	485.85	643.35	292.9
Merged-chr2-26021721-3	chr2	26021222	26022222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	38.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	43.48	33.18	64.75	39.81	37.79	65.91	58.09	37.58	50.59
Merged-chr17-44103913-3	chr17	44103409	44104409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357996, intron 1 of 3)	intron (NM_001357996, intron 1 of 3)	1899.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	60.64	70.04	55.5	49.93	46.65	44.21	79.21	73.84	53.71
Merged-chr14-118089447-3	chr14	118088979	118089979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37233.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	103.54	101.37	80.47	104.58	100.77	94.85	104.56	108.33	48.71
Merged-chr6-72162372-3	chr6	72161887	72162887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39190.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	208.8	146.53	123.02	199.04	104.03	146.29	177.44	169.79	67.45
Merged-chr13-41331823-3	chr13	41331335	41332335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	27166.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	17.16	13.36	2.77	14.84	14.0	12.86	7.39	4.86	11.24
Merged-chr5-92505665-3	chr5	92505152	92506152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	5.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	395.86	367.24	258.06	392.69	397.93	304.64	347.48	362.58	200.47
Merged-chr3-109464817-3	chr3	109464314	109465314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-109193.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	26.89	34.56	24.05	47.23	33.59	42.6	23.24	24.76	16.24
Merged-chr15-62037936-3	chr15	62037424	62038424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003368)	promoter-TSS (NR_003368)	-62.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	179.62	148.37	108.22	234.13	207.6	144.68	199.62	208.26	79.32
Merged-chr15-57929564-3	chr15	57929035	57930035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	17336.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	94.96	88.93	42.55	86.36	60.65	41.8	78.16	84.9	41.22
Merged-chr13-49298608-3	chr13	49298063	49299063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	10645.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	46.91	44.7	43.47	44.53	39.65	42.6	39.08	32.28	27.48
Merged-chr10-126905812-3	chr10	126905300	126906300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4429.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	153.31	193.99	126.72	192.29	207.6	122.98	173.21	196.76	103.67
Merged-chr12-100445457-3	chr12	100444952	100445952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	75370.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	41.76	31.33	16.65	48.58	47.58	45.01	24.29	11.94	19.36
Merged-chr11-103265399-3	chr11	103264900	103265900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2001.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	105.83	126.72	98.97	99.86	57.85	36.17	137.3	146.8	66.82
Merged-chr13-13393573-3	chr13	13393058	13394058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	66.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	33.18	30.41	56.42	79.62	65.31	66.71	48.58	42.01	18.74
Merged-chr6-70844333-3	chr6	70843817	70844817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010121)	promoter-TSS (NM_010121)	-198.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	121.85	98.61	66.6	116.05	86.3	68.32	126.74	88.43	43.72
Merged-chr9-120582789-3	chr9	120582291	120583291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5460.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	52.63	58.06	38.85	67.47	65.31	80.38	71.82	72.52	36.22
Merged-chr5-36989075-3	chr5	36988574	36989574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011716)	promoter-TSS (NM_011716)	-92.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	23.45	29.03	29.6	24.96	24.72	14.47	47.53	34.05	20.61
Merged-chr18-23873369-2	chr18	23872879	23873879	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	69409.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	17.16	17.97	11.1	213.21	181.94	153.52	207.01	235.68	72.45
Merged-chr15-101266026-3	chr15	101265528	101266528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-818.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	200.79	158.97	68.45	246.95	167.94	179.24	243.98	235.68	111.79
Merged-chr4-123282701-3	chr4	123282224	123283224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356377)	promoter-TSS (NM_001356377)	-187.0	NM_148917	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	40.04	43.77	37.92	52.63	52.25	65.91	61.26	67.21	34.97
Merged-chr10-21067340-3	chr10	21066835	21067835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177776, intron 4 of 6)	intron (NM_001177776, intron 4 of 6)	26515.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	17.16	18.43	9.25	6.75	12.6	12.86	7.39	10.61	9.99
Merged-chr17-15021697-2	chr17	15021181	15022181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123372, intron 11 of 11)	intron (NM_001123372, intron 11 of 11)	-11497.0	NM_198104	21647.0	Mm.440445	NM_011560	ENSMUSG00000079707	Tcte3	D17Leh117c|LC2|Tcte-3|Tctex-2|Tctex-4|Tctex2|Tctex4	t-complex-associated testis expressed 3	protein-coding	42.9	22.58	18.5	0.0	0.0	0.0	24.29	18.57	9.99
Merged-chr2-158166761-3	chr2	158166253	158167253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20361.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	219.67	171.41	110.99	242.22	177.27	143.07	221.8	254.25	103.67
Merged-chr9-120110781-3	chr9	120110288	120111288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 1 of 6)	CpG	389.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	220.24	219.79	205.34	164.63	167.01	132.63	146.81	200.74	130.53
Merged-chr14-13551334-2	chr14	13550825	13551825	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163032, intron 2 of 4)	intron (NM_001163032, intron 2 of 4)	97367.0	NM_001163032	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.57	3.23	0.0	9.45	8.4	8.04	4.22	2.21	11.24
Merged-chr2-75788713-3	chr2	75788188	75789188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43489.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	13.73	14.75	32.37	18.22	7.0	19.29	34.85	22.99	18.11
Merged-chr14-51237700-3	chr14	51237197	51238197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	18415.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	23.45	27.19	50.87	33.74	24.72	28.13	5.28	11.5	8.74
Merged-chr2-148681050-3	chr2	148680546	148681546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028986)	promoter-TSS (NM_028986)	-74.0	NM_001355689	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	279.16	274.63	198.87	271.24	218.79	162.37	283.06	318.36	178.61
Merged-chr9-62363807-2	chr9	62363306	62364306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	22463.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	70.36	58.06	20.35	16.19	4.67	12.06	1.06	2.21	3.75
Merged-chr3-31094192-1	chr3	31093692	31094692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-866.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	283.74	229.47	216.44	234.13	158.15	188.09	324.25	264.42	130.53
Merged-chr1-165616823-3	chr1	165616337	165617337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17704.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	215.09	209.2	142.44	249.65	245.38	180.85	217.57	285.2	129.9
Merged-chr16-33076354-1	chr16	33075854	33076854	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	MTD|LTR|ERVL-MaLR	13833.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	39.47	47.0	41.62	38.46	37.32	37.78	41.19	45.1	17.49
Merged-chr11-99189342-3	chr11	99188854	99189854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34277.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	117.27	110.13	60.12	85.69	68.58	52.25	84.49	114.08	49.34
Merged-chr5-139398007-3	chr5	139397516	139398516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	8112.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	199.65	143.3	142.44	233.45	164.21	147.9	129.91	138.4	96.8
Merged-chr10-80603041-5	chr10	80602532	80603532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019575, intron 1 of 6)	CpG	150.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	124.14	119.34	116.54	171.38	114.76	120.57	159.48	182.17	94.93
Merged-chr8-119779527-3	chr8	119779032	119780032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1116.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	7.44	7.37	22.2	6.75	4.67	10.45	13.73	7.52	7.49
Merged-chr11-86201264-3	chr11	86200757	86201757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130958)	promoter-TSS (NR_130958)	-64.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	76.66	70.96	60.12	74.22	78.37	66.71	81.33	98.16	51.84
Merged-chr11-75047306-3	chr11	75046814	75047814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18677.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	194.5	171.87	99.89	186.22	146.48	184.07	173.21	170.68	86.81
Merged-chr11-22872018-3	chr11	22871523	22872523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	102.97	91.24	57.35	85.69	69.98	65.91	73.93	78.26	60.58
Merged-chr6-87184056-3	chr6	87183552	87184552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	79306.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	40.04	20.74	25.9	11.47	4.67	1.61	29.57	21.67	8.74
Merged-chr11-117830055-3	chr11	117829549	117830549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4035.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	513.13	426.69	278.41	479.72	334.49	274.9	388.68	507.17	186.73
Merged-chr10-118092320-1	chr10	118091820	118092820	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49467.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	2.29	4.15	0.0	6.75	2.8	9.65	63.37	49.96	36.22
Merged-chr13-17695530-2	chr13	17695030	17696030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	117.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	324.93	394.43	334.83	314.42	311.63	262.04	377.06	359.48	277.91
Merged-chr17-73935456-3	chr17	73934946	73935946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 5 of 35)	URR1A|DNA|hAT-Charlie	14750.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	135.58	119.8	96.2	145.06	133.89	98.06	118.29	133.09	41.84
Merged-chr10-82860755-3	chr10	82860229	82861229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	388.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	366.69	327.62	239.56	347.48	357.35	245.16	320.02	338.7	218.58
Merged-chr2-155819253-3	chr2	155818767	155819767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015528)	promoter-TSS (NR_015528)	-64.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	179.62	171.41	171.12	168.0	149.28	147.09	171.1	176.87	111.17
Merged-chr1-74601405-3	chr1	74600922	74601922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305230)	promoter-TSS (NM_001305230)	-25.0	NM_001305230	57751.0	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	60.07	46.08	35.15	43.18	41.99	26.53	41.19	43.77	34.35
Merged-chr1-150165050-3	chr1	150164549	150165549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-101.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	26.31	18.89	3.7	24.29	18.66	8.04	23.24	21.67	3.75
Merged-chr2-116989502-3	chr2	116989007	116990007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89355.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	203.65	158.97	82.32	148.44	83.97	141.47	121.46	127.34	76.82
Merged-chr1-154260626-1	chr1	154260126	154261126	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-3720.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	7.44	5.99	4.62	7.42	6.53	6.43	3.17	3.54	7.49
Merged-chr14-46912696-3	chr14	46912190	46913190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	29725.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	88.1	101.83	47.17	123.47	69.51	73.95	117.24	106.56	70.57
Merged-chr11-97830682-3	chr11	97830160	97831160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10120.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	203.65	147.45	66.6	250.99	202.93	164.78	186.94	210.03	92.43
Merged-chr14-55672194-3	chr14	55671672	55672672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-63.0	NM_177992	105446.0	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	48.62	79.25	78.62	57.35	62.98	77.16	69.71	76.05	49.34
Merged-chr10-41477930-3	chr10	41477413	41478413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-97.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	107.55	94.0	62.9	124.15	86.77	86.81	101.39	96.83	59.33
Merged-chr17-27938551-3	chr17	27938056	27939056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	29250.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	53.77	54.83	40.7	80.97	46.18	59.48	46.47	36.26	44.34
Merged-chr2-26640450-4	chr2	26639965	26640965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024068)	promoter-TSS (NR_024068)	-221.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	168.18	171.87	124.87	185.55	164.68	141.47	166.88	157.41	112.42
Merged-chr5-52431662-3	chr5	52431148	52432148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-9511.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	17.16	17.51	12.95	6.75	2.33	4.02	6.34	10.17	3.75
Merged-chr9-58232616-3	chr9	58232095	58233095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	11445.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	180.2	186.16	170.19	119.43	125.96	146.29	178.5	175.54	121.16
Merged-chr14-21831169-4	chr14	21830671	21831671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011695)	promoter-TSS (NM_011695)	-390.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	214.52	224.86	217.36	232.78	213.66	196.93	259.82	229.93	110.54
Merged-chr4-108369424-3	chr4	108368937	108369937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 2 of 2)	intron (NM_001099303, intron 2 of 2)	14218.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	62.35	70.04	37.0	99.86	61.11	66.71	104.56	95.95	61.2
Merged-chr10-125966177-3	chr10	125965676	125966676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177152)	promoter-TSS (NM_177152)	-43.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	14.87	6.91	7.4	26.31	9.8	16.88	13.73	5.31	8.74
Merged-chr14-19713240-3	chr14	19712731	19713731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-38026.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	60.64	99.99	82.32	62.07	75.57	92.44	64.43	67.21	53.71
Merged-chr13-112927528-3	chr13	112927052	112928052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	-172.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	136.72	146.99	105.44	99.18	92.37	112.53	122.52	143.7	68.07
Merged-chr11-75172528-5	chr11	75172097	75173097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-791.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	51.48	30.41	36.07	72.19	32.19	62.7	54.92	49.96	24.36
Merged-chr16-10992268-3	chr16	10991752	10992752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	869.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	473.09	411.94	272.86	483.77	393.73	344.83	359.1	518.66	197.98
Merged-chr17-32528901-3	chr17	32528380	32529380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101445)	TTS (NM_001101445)	-7677.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	9.72	4.15	2.77	8.77	5.6	1.61	13.73	1.77	4.37
Merged-chr3-152396527-3	chr3	152396014	152397014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-170.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	292.89	208.27	205.34	355.58	196.87	188.89	327.42	187.04	142.39
Merged-chr17-29395543-3	chr17	29395047	29396047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34633.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	323.78	301.81	190.54	270.56	176.34	184.07	267.21	376.73	177.37
Merged-chr18-40219423-3	chr18	40218932	40219932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-33.0	NM_023311	67180.0	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	170.47	171.41	90.65	164.63	144.15	128.61	211.24	208.26	90.56
Merged-chr5-67836446-3	chr5	67835925	67836925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	11006.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	50.34	35.48	32.37	65.45	44.32	36.97	45.42	42.45	19.36
Merged-chr14-104522635-3	chr14	104522128	104523128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026047)	promoter-TSS (NM_026047)	38.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	53.2	33.18	40.7	59.38	42.92	37.78	73.93	52.62	38.1
Merged-chr19-25074993-3	chr19	25074489	25075489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	75460.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	16.02	18.89	15.72	20.24	8.86	16.88	15.84	14.15	16.24
Merged-chr14-32159912-3	chr14	32159395	32160395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	8.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	119.56	135.47	141.52	120.1	109.16	133.43	145.75	164.49	93.68
Merged-chr18-34776921-3	chr18	34776431	34777431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081256)	promoter-TSS (NM_001081256)	-77.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	246.56	199.98	212.74	212.54	126.89	167.19	195.39	107.0	119.91
Merged-chr11-62542807-3	chr11	62542316	62543316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-3555.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	112.69	116.58	53.65	97.83	55.98	73.95	140.47	122.48	58.71
Merged-chr6-129396981-3	chr6	129396480	129397480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204239)	promoter-TSS (NM_001204239)	-317.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	124.71	130.86	99.89	157.21	110.56	112.53	167.93	184.38	104.3
Merged-chr18-46741699-5	chr18	46741249	46742249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	-127.0	NM_001303015	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	257.42	274.63	224.76	242.22	250.05	206.57	339.04	319.24	142.39
Merged-chr2-131186888-3	chr2	131186392	131187392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023117)	promoter-TSS (NM_023117)	-56.0	NM_023117	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	38.33	30.87	12.02	37.11	27.06	38.58	40.14	31.39	25.61
Merged-chr10-88731004-3	chr10	88730527	88731527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	74.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	265.43	304.12	185.92	238.18	281.77	223.45	236.59	328.53	139.27
Merged-chrX-140614231-1	chrX	140613731	140614731	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13709.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	2.86	1.38	1.85	3.37	2.8	2.41	3.17	4.86	3.12
Merged-chr19-26748326-3	chr19	26747821	26748821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026003)	promoter-TSS (NM_026003)	-82.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	72.08	62.21	84.17	61.4	62.51	86.01	110.9	103.91	61.83
Merged-chr17-45625522-3	chr17	45625033	45626033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23431.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	66.36	53.45	49.95	47.9	41.52	53.85	80.27	87.55	69.95
Merged-chr13-42052834-3	chr13	42052310	42053310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 1 of 8)	(TCC)n|Simple_repeat|Simple_repeat	789.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	384.42	274.63	194.24	342.08	195.47	174.42	315.8	266.18	156.76
Merged-chr7-130546912-3	chr7	130546405	130547405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162855, intron 1 of 10)	CpG	476.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	156.74	162.66	134.12	179.47	187.54	127.0	124.63	132.21	78.07
Merged-chr2-60901693-3	chr2	60901220	60902220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-20282.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	256.28	275.55	110.99	276.63	270.11	193.71	276.72	280.33	116.16
Merged-chr9-78175502-3	chr9	78175010	78176010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040401)	promoter-TSS (NR_040401)	-404.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	136.15	170.03	102.67	129.55	125.96	89.22	155.26	175.98	86.81
Merged-chr9-45906475-3	chr9	45905977	45906977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281934)	promoter-TSS (NM_001281934)	-92.0	NM_001281934	18554.0	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	252.85	262.65	242.34	222.66	217.39	244.35	276.72	256.9	205.47
Merged-chr13-56703016-3	chr13	56702548	56703548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-4.0	NM_001164041	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	235.11	165.88	191.47	196.34	126.42	143.88	232.36	95.07	111.17
Merged-chr5-21386577-3	chr5	21386096	21387096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	L1MB3|LINE|L1	13923.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	116.13	139.16	110.07	134.27	82.11	85.2	122.52	133.53	87.43
Merged-chr17-5602154-3	chr17	5601639	5602639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	109539.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	37.76	26.26	11.1	73.54	39.65	30.54	22.18	12.38	26.23
Merged-chr12-8922031-3	chr12	8921628	8922628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008640, exon 1 of 7)	exon (NM_008640, exon 1 of 7)	821.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	537.16	558.93	387.56	444.64	476.77	368.94	533.37	553.15	257.93
Merged-chr17-6079807-3	chr17	6079289	6080289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181392)	promoter-TSS (NM_181392)	-39.0	NM_181392	66467.0	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	154.45	167.73	129.49	153.84	174.47	123.78	193.28	168.47	89.31
Merged-chr8-41017739-3	chr8	41017241	41018241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015457, exon 1 of 3)	non-coding (NR_015457, exon 1 of 3)	273.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	36.61	53.91	56.42	40.48	38.72	34.56	159.48	168.91	85.56
Merged-chr3-88553659-3	chr3	88553154	88554154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-62.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	166.47	141.92	144.29	145.06	113.83	122.98	137.3	124.25	114.91
Merged-chr19-38022890-3	chr19	38022390	38023390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 2 of 53)	intron (NM_001302140, intron 2 of 53)	20687.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	82.95	88.47	79.55	101.21	89.57	106.9	67.6	87.11	69.32
Merged-chr18-23415294-1	chr18	23414794	23415794	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010087)	promoter-TSS (NM_010087)	-115.0	NM_010087	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.43	0.92	1.85	6.75	4.67	9.65	5.28	0.88	6.25
Merged-chr11-43385372-3	chr11	43384857	43385857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10896.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	368.4	334.07	187.77	390.66	279.44	217.02	361.22	365.67	197.98
Merged-chr3-89091002-3	chr3	89090500	89091500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	-969.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	20.02	6.91	4.62	23.62	8.86	9.65	12.67	6.19	6.25
Merged-chr11-94161447-3	chr11	94160949	94161949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50005.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	77.23	54.83	35.15	195.67	152.55	117.35	74.99	74.73	31.23
Merged-chr16-11322899-3	chr16	11322405	11323405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028964)	promoter-TSS (NM_028964)	1.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	93.24	96.3	100.82	119.43	105.43	136.64	135.19	88.88	66.2
Merged-chr10-87718786-3	chr10	87718273	87719273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139492.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	28.03	27.65	16.65	30.36	35.45	42.6	34.85	38.03	26.23
Merged-chr14-46884207-3	chr14	46883712	46884712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 1 of 12)	CpG	1247.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	84.66	74.19	65.67	89.74	59.25	91.63	119.35	121.15	80.56
Merged-chr6-30616831-3	chr6	30616352	30617352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144537, intron 4 of 11)	intron (NM_144537, intron 4 of 11)	5842.0	NM_144537	74649.0	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	11.44	5.53	1.85	6.75	3.27	3.22	4.22	1.77	0.0
Merged-chr15-96285572-3	chr15	96285071	96286071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1951.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	431.33	386.6	328.36	417.65	320.96	278.11	348.54	351.97	237.32
Merged-chr5-108312744-3	chr5	108312211	108313211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081234)	promoter-TSS (NM_001081234)	-214.0	NM_001081234	433931.0	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	169.9	191.69	136.89	132.24	160.01	183.26	177.44	157.41	129.9
Merged-chr10-94355575-3	chr10	94355075	94356075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43626.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	141.3	94.0	73.07	149.79	83.04	79.58	192.23	166.7	69.95
Merged-chr14-25485761-3	chr14	25485264	25486264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	26579.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	49.2	31.33	19.42	53.98	15.39	35.37	27.46	26.53	9.37
Merged-chr11-59538574-3	chr11	59538073	59539073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2996.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	67.5	66.35	73.07	105.26	59.71	84.4	80.27	86.22	47.46
Merged-chr15-33212026-3	chr15	33211514	33212514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	MIR|SINE|MIR	128885.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	86.38	127.64	86.02	93.79	89.57	60.28	128.85	130.44	67.45
Merged-chr10-117840727-3	chr10	117840224	117841224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	5250.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	145.87	129.48	67.52	133.59	78.84	80.38	140.47	144.15	63.08
Merged-chrUn_JH584304-63112-1	chrUn_JH584304	62612	63612	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAG|tRNA|tRNA	-3423.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	64.43	64.56	0.0
Merged-chr15-73423243-3	chr15	73422738	73423738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358045)	promoter-TSS (NM_001358045)	-47.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	330.65	326.7	260.84	276.63	255.18	231.49	336.92	301.12	174.24
Merged-chr7-44467972-3	chr7	44467474	44468474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205070)	promoter-TSS (NM_001205070)	-6.0	NM_001360604	66124.0	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	41.76	49.3	22.2	33.74	35.92	29.74	39.08	22.11	31.23
Merged-chr8-105937102-3	chr8	105936620	105937620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013640, intron 4 of 7)	intron (NM_013640, intron 4 of 7)	1272.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	43.48	57.6	95.27	47.23	30.79	69.93	46.47	53.94	54.33
Merged-chr15-27783302-3	chr15	27782788	27783788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-101746.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	109.83	109.67	78.62	100.53	98.9	81.18	65.48	83.57	45.59
Merged-chr12-108641190-3	chr12	108640696	108641696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	5443.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	231.11	237.3	138.74	229.4	189.4	152.72	212.29	259.55	116.79
Merged-chr13-43398377-3	chr13	43397895	43398895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023554)	promoter-TSS (NM_023554)	19.0	NM_023554	70078.0	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	69.22	61.28	83.25	74.89	62.05	78.77	102.45	72.07	38.1
Merged-chr4-116995346-3	chr4	116994836	116995836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009478)	promoter-TSS (NM_009478)	-12.0	NM_175244	76608.0	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain E3 ubiquitin protein ligase 3	protein-coding	42.33	31.79	23.12	41.16	36.39	51.44	63.37	49.52	34.35
Merged-chr11-98588288-3	chr11	98587797	98588797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1052.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	118.99	95.38	37.92	105.93	86.3	67.52	107.73	96.39	40.59
Merged-chr17-36951751-3	chr17	36951253	36952253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029632)	promoter-TSS (NM_029632)	39.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	270.01	194.91	160.94	193.64	141.35	160.76	179.55	192.78	94.93
Merged-chr15-6411542-3	chr15	6411036	6412036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	24788.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	77.23	99.07	40.7	101.21	79.77	53.85	71.82	60.58	41.22
Merged-chrX-134963400-3	chrX	134962893	134963893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031259, intron 1 of 21)	(CCCCG)n|Simple_repeat|Simple_repeat	504.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	21.17	7.37	4.62	17.54	3.27	7.23	15.84	11.94	8.74
Merged-chr1-136142879-3	chr1	136142372	136143372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	MIR|SINE|MIR	11482.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	248.27	207.35	164.64	300.25	168.88	200.14	325.31	322.34	141.77
Merged-chr9-88481869-3	chr9	88481367	88482367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284328, intron 1 of 11)	CpG	530.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	172.76	150.22	214.59	178.13	134.35	233.9	147.87	133.53	200.47
Merged-chr2-158409734-3	chr2	158409220	158410220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291138)	promoter-TSS (NM_001291138)	-133.0	NM_001291137	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	197.93	137.31	84.17	132.24	107.3	106.9	146.81	101.26	77.44
Merged-chr5-136987485-3	chr5	136986949	136987949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310747)	promoter-TSS (NM_001310747)	430.0	NM_011962	26433.0	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	267.72	264.95	241.41	297.55	236.99	237.12	218.63	261.76	144.27
Merged-chr6-71279583-3	chr6	71279081	71280081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	7562.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	18.31	11.52	10.17	26.31	14.93	6.43	25.35	10.17	8.74
Merged-chrUn_JH584304-28841-1	chrUn_JH584304	28341	29341	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30848.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	73.93	51.73	0.0
Merged-chr9-44772918-3	chr9	44772420	44773420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023831)	promoter-TSS (NM_023831)	-89.0	NM_023831	76568.0	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	66.36	88.93	44.4	70.17	56.45	58.68	61.26	66.33	48.09
Merged-chr10-82048162-3	chr10	82047695	82048695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001319203)	promoter-TSS (NM_001319203)	68.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	28.6	29.03	37.0	22.94	19.59	28.94	52.81	38.91	13.74
Merged-chr2-119742251-3	chr2	119741749	119742749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146125)	promoter-TSS (NM_146125)	-88.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	34.9	28.11	62.9	38.46	27.99	24.11	34.85	32.28	31.23
Merged-chr2-173659705-3	chr2	173659183	173660183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027957)	promoter-TSS (NR_027957)	-144.0	NR_027957	100043911.0	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	108.69	84.78	96.2	108.63	87.7	98.87	138.36	95.51	72.45
Merged-chr17-34315622-1	chr17	34315122	34316122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010382, intron 5 of 5)	intron (NM_010382, intron 5 of 5)	9755.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	3.43	0.92	32.37	4.05	1.87	1.61	3.17	7.96	8.74
Merged-chr1-43474253-3	chr1	43473750	43474750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28499.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	120.13	104.14	88.8	154.51	137.62	131.82	144.7	168.02	109.92
Merged-chr4-112288601-1	chr4	112288101	112289101	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102474, intron 8 of 9)	Lx2|LINE|L1	56356.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	5.28	1.77	1.25
Merged-chr10-19584287-3	chr10	19583793	19584793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7656.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	53.77	64.05	87.87	69.5	46.18	63.5	63.37	56.16	48.71
Merged-chr15-79413954-3	chr15	79413464	79414464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10661.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	193.35	155.75	87.87	176.1	123.16	93.24	123.57	162.28	83.69
Merged-chr8-126594019-3	chr8	126593503	126594503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164598)	promoter-TSS (NM_001164598)	-567.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	201.36	156.21	121.17	244.92	193.13	151.92	205.96	213.57	121.78
Merged-chr8-121113422-3	chr8	121112919	121113919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2752.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	4.0	8.29	1.85	5.4	5.13	9.65	5.28	2.65	11.24
Merged-chr11-82764365-3	chr11	82763905	82764905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	60.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	220.81	213.34	164.64	186.9	198.73	204.16	226.02	206.49	134.9
Merged-chr5-30869611-3	chr5	30869104	30870104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144525)	promoter-TSS (NM_144525)	25.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	74.37	80.18	84.17	82.32	73.71	97.26	91.89	76.49	64.33
Merged-chr18-60733145-1	chr18	60732645	60733645	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-4.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	118.42	131.32	120.24	96.48	90.04	115.75	136.25	177.75	81.81
Merged-chr9-120002204-3	chr9	120001708	120002708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17466.0	NM_153287	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	133.86	105.98	95.27	134.27	125.02	127.8	128.85	108.77	64.95
Merged-chr5-138280198-3	chr5	138279706	138280706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-269.0	NM_172412	71951.0	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	12.59	3.69	15.72	15.52	9.33	17.68	6.34	6.63	3.75
Merged-chr15-51738782-3	chr15	51738292	51739292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	126669.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	43.48	46.08	37.92	16.87	14.0	20.9	4.22	3.1	14.99
Merged-chr19-44930990-3	chr19	44930494	44931494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-125.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	224.82	208.27	158.17	217.93	202.46	176.03	222.86	237.89	126.78
Merged-chr3-118070302-3	chr3	118069786	118070786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-201350.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	13.73	11.52	12.95	16.87	14.46	8.84	24.29	20.78	18.11
Merged-chr1-78490317-3	chr1	78489811	78490811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	13.73	22.58	24.05	26.31	11.66	27.33	22.18	20.34	15.61
Merged-chr6-90737613-3	chr6	90737108	90738108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-21079.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	8.58	2.76	2.77	5.4	1.4	0.0	4.22	4.42	7.49
Merged-chr18-77796273-3	chr18	77795757	77796757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152167, exon 1 of 3)	non-coding (NR_152167, exon 1 of 3)	133.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	174.48	209.2	192.39	148.44	115.69	162.37	218.63	260.44	135.52
Merged-chr17-70992917-2	chr17	70992416	70993416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357820)	TTS (NM_001357820)	-2400.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	163.61	217.49	113.77	174.75	162.81	160.76	136.25	131.32	69.32
Merged-chr15-79834347-3	chr15	79833804	79834804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028763)	promoter-TSS (NM_028763)	29.0	NM_001013360	504193.0	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	10.87	3.69	4.62	14.84	7.46	16.08	12.67	3.1	5.0
Merged-chr12-64965648-3	chr12	64965152	64966152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	-90.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	220.81	270.02	142.44	183.52	237.92	122.98	163.71	176.87	118.04
Merged-chr6-31218489-3	chr6	31217975	31218975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-1.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	384.42	499.95	256.21	430.47	502.9	350.45	343.26	550.94	234.2
Merged-chr16-30064176-3	chr16	30063669	30064669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1188.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	341.52	270.02	200.71	335.33	269.64	206.57	260.88	271.49	160.5
Merged-chr10-120979461-3	chr10	120979013	120980013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-183.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	351.24	277.85	136.89	387.96	342.88	220.24	220.74	194.11	84.31
Merged-chr13-98316864-4	chr13	98316282	98317282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_137279)	promoter-TSS (NR_137279)	185.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	327.79	300.43	270.09	333.99	295.3	282.13	299.96	250.71	159.88
Merged-chr7-43466518-3	chr7	43466001	43467001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290316, exon 5 of 10)	exon (NM_001290316, exon 5 of 10)	3268.0	NM_001290316	75690.0	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	78.94	99.99	67.52	81.64	93.3	74.75	89.78	99.49	51.84
Merged-chr6-59011890-3	chr6	59011395	59012395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	12607.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	37.18	38.25	41.62	39.13	34.52	35.37	17.96	24.76	34.97
Merged-chr10-37203954-3	chr10	37203454	37204454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65028.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	133.29	99.99	49.02	134.94	96.1	47.42	64.43	82.69	41.84
Merged-chr8-26976064-3	chr8	26975569	26976569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	116.7	116.58	74.92	119.43	99.37	99.67	100.34	95.07	49.96
Merged-chr2-118598200-3	chr2	118597678	118598678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-33.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	80.09	64.05	32.37	70.85	53.18	53.85	134.14	137.07	64.95
Merged-chr9-57645671-3	chr9	57645177	57646177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007783)	promoter-TSS (NM_007783)	-24.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	220.81	150.22	192.39	159.23	92.37	154.33	222.86	129.55	128.65
Merged-chr11-80085851-3	chr11	80085357	80086357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3543.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	52.63	62.21	47.17	58.7	53.65	64.3	60.2	57.92	53.71
Merged-chr10-128409902-3	chr10	128409419	128410419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-69.0	NM_027257	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	53.77	52.07	49.95	39.81	41.99	44.21	49.64	81.8	44.97
Merged-chr11-116581553-3	chr11	116581060	116582060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173755)	promoter-TSS (NM_173755)	-113.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	13.16	16.13	7.4	24.96	14.93	13.66	15.84	9.29	5.0
Merged-chr15-55090257-4	chr15	55089791	55090791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355594, exon 1 of 10)	exon (NM_001355594, exon 1 of 10)	200.0	NM_183089	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	28.6	17.51	27.75	27.66	26.12	23.31	21.12	16.36	9.99
Merged-chr2-29827238-3	chr2	29826734	29827734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026615)	promoter-TSS (NM_026615)	-155.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	197.36	203.67	196.09	125.5	128.29	196.93	201.73	179.52	106.17
Merged-chr18-9958045-3	chr18	9957557	9958557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153552)	promoter-TSS (NM_153552)	-123.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	215.09	219.79	103.59	186.9	235.59	209.79	201.73	221.97	104.3
Merged-chr18-23812870-3	chr18	23812360	23813360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	8890.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	177.34	163.58	141.52	183.52	134.82	157.54	168.99	147.24	78.07
Merged-chr11-116306748-3	chr11	116306251	116307251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016857)	promoter-TSS (NM_016857)	-1.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	41.19	25.8	30.52	33.74	31.26	45.82	20.07	21.22	24.98
Merged-chr8-129234359-4	chr8	129233855	129234855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153780)	promoter-TSS (NM_153780)	-309.0	NM_153780	72139.0	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	113.27	143.76	145.22	134.27	101.23	131.82	172.16	192.34	119.28
Merged-chr4-44013083-3	chr4	44012597	44013597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	CpG	447.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	219.67	196.75	208.11	194.32	202.0	184.07	193.28	151.22	163.0
Merged-chr3-98066648-3	chr3	98066136	98067136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	B3|SINE|B2	53098.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	27.46	16.59	23.12	21.59	8.4	20.09	6.34	7.96	2.5
Merged-chr6-54681650-3	chr6	54681162	54682162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	38.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	160.18	177.4	162.79	141.02	132.95	170.4	46.47	31.84	31.85
Merged-chr1-85838240-3	chr1	85837744	85838744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	44227.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	101.25	117.96	69.37	99.18	108.23	77.16	89.78	116.73	53.08
Merged-chrX-13463323-3	chrX	13462828	13463828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-4344.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	65.21	92.16	54.57	87.04	74.64	94.85	71.82	76.05	41.84
Merged-chr18-39489366-4	chr18	39488917	39489917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2172.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	246.56	216.57	276.56	244.25	182.4	217.02	261.93	180.85	131.15
Merged-chr9-23669427-3	chr9	23668934	23669934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-428584.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	7.44	8.29	9.25	14.84	7.93	21.7	2.11	3.54	6.25
Merged-chr17-51179409-3	chr17	51178906	51179906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285991)	promoter-TSS (NM_001285991)	-54.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	545.74	444.66	387.56	566.76	461.84	318.3	541.82	486.83	232.32
Merged-chr12-84617462-3	chr12	84616975	84617975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008992)	promoter-TSS (NM_008992)	-9.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	67.5	78.33	40.7	114.7	109.63	146.29	105.62	115.41	56.21
Merged-chr2-128372407-3	chr2	128371904	128372904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028591, exon 2 of 2)	non-coding (NR_028591, exon 2 of 2)	56947.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	157.31	133.63	123.02	172.05	176.81	129.41	140.47	189.69	78.69
Merged-chr11-120086905-3	chr11	120086389	120087389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009734)	promoter-TSS (NM_009734)	-62.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	17.16	15.67	25.9	30.36	19.59	36.17	25.35	11.05	19.36
Merged-chr6-128891216-3	chr6	128890724	128891724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254946)	promoter-TSS (NM_001254946)	-100.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	104.69	109.67	76.77	85.01	59.71	52.25	84.49	95.51	51.84
Merged-chr5-31766985-3	chr5	31766499	31767499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	68949.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	73.79	105.52	90.65	62.07	90.97	78.77	103.51	82.24	84.31
Merged-chr11-32554895-3	chr11	32554401	32555401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	(T)n|Simple_repeat|Simple_repeat	21635.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	156.74	140.08	74.0	172.73	123.62	139.86	194.34	145.92	98.05
Merged-chr19-37048736-1	chr19	37048236	37049236	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	122657.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	10.3	8.29	4.62	21.59	20.06	20.09	243.98	300.23	148.01
Merged-chr13-37844082-3	chr13	37843601	37844601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	16708.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	45.19	27.65	31.45	32.39	20.99	45.82	29.57	34.49	28.73
Merged-chr1-36875073-3	chr1	36874597	36875597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 3 of 40)	ORR1E|LTR|ERVL-MaLR	64430.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	24.6	33.64	34.22	20.92	27.99	20.09	19.01	15.92	10.62
Merged-chr15-25637927-3	chr15	25637404	25638404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	15354.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	96.68	81.1	70.3	67.47	48.05	57.87	46.47	65.0	37.47
Merged-chr9-22475677-3	chr9	22475136	22476136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181316)	promoter-TSS (NM_181316)	-79.0	NM_001360259	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	35.47	23.5	17.57	45.21	48.98	21.7	24.29	27.41	9.37
Merged-chr8-46778297-3	chr8	46777793	46778793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	38548.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	149.31	160.81	84.17	125.5	95.17	107.71	132.02	152.55	83.06
Merged-chr13-29292969-3	chr13	29292473	29293473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131896, intron 15 of 16)	RSINE1|SINE|B4	276718.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	23.45	22.12	29.6	19.57	13.53	17.68	65.48	66.33	18.11
Merged-chr1-180793687-3	chr1	180793189	180794189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19916.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	12.59	10.6	9.25	32.39	8.86	1.61	15.84	11.5	16.24
Merged-chr3-15428102-3	chr3	15427582	15428582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1655.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	42.9	39.17	11.1	39.13	46.65	29.74	40.14	32.72	30.6
Merged-chr6-5269314-3	chr6	5268819	5269819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 5 of 8)	intron (NM_183308, intron 5 of 8)	-13086.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	11.44	6.91	5.55	12.82	4.67	16.08	8.45	5.75	5.0
Merged-chr14-19751218-3	chr14	19750720	19751720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-37.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	51.48	52.53	49.02	72.19	57.38	71.54	36.97	41.12	30.6
Merged-chr16-35983982-3	chr16	35983484	35984484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008465, intron 1 of 13)	CpG	621.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	291.18	223.02	156.32	307.67	198.73	194.52	276.72	187.04	132.4
Merged-chr9-21616058-3	chr9	21615564	21616564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011417)	promoter-TSS (NM_011417)	-105.0	NM_011417	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	180.2	156.21	134.12	157.21	176.81	151.92	188.0	173.77	104.3
Merged-chr1-97661589-3	chr1	97661068	97662068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	108.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	164.75	112.43	129.49	127.52	118.49	138.25	163.71	100.37	94.3
Merged-chr10-111996044-3	chr10	111995538	111996538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	L1MA7|LINE|L1	1226.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	53.2	64.05	41.62	79.62	64.84	38.58	28.52	46.43	25.61
Merged-chr10-108191702-3	chr10	108191202	108192202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	29302.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	76.66	112.43	50.87	112.0	84.9	73.14	89.78	96.83	66.2
Merged-chr1-171844368-3	chr1	171843875	171844875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4678.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	176.76	223.02	123.94	211.19	187.07	165.58	234.47	327.2	138.65
Merged-chr10-20952585-3	chr10	20952084	20953084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026203)	promoter-TSS (NM_026203)	37.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	110.98	90.31	62.9	142.37	94.7	90.02	100.34	136.63	66.82
Merged-chr8-84976583-3	chr8	84976106	84977106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008416)	TTS (NM_008416)	2142.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	460.5	406.41	250.66	394.71	357.35	270.07	353.82	400.16	197.98
Merged-chr10-122815297-2	chr10	122814809	122815809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	135994.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	23.45	18.89	17.57	23.62	15.86	25.72	5.28	7.52	7.49
Merged-chr16-43448720-3	chr16	43448233	43449233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-28537.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	22.31	30.87	33.3	24.96	20.99	17.68	19.01	20.78	30.6
Merged-chr11-70374529-3	chr11	70374040	70375040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	-22509.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	49.2	59.44	38.85	52.63	44.32	48.23	38.02	68.54	44.97
Merged-chr4-119540455-3	chr4	119539971	119540971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290696, intron 1 of 11)	intron (NM_001290696, intron 1 of 11)	810.0	NM_172699	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	172.76	168.19	201.64	167.33	131.56	156.74	177.44	114.08	86.18
Merged-chr12-59132736-3	chr12	59132232	59133232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	1279.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	112.12	146.53	87.87	82.32	106.36	91.63	113.01	171.56	103.67
Merged-chr14-33185205-3	chr14	33184716	33185716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-150.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	263.14	261.73	192.39	283.38	353.15	229.88	303.13	284.31	144.89
Merged-chr1-85736624-3	chr1	85736120	85737120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177055)	promoter-TSS (NM_177055)	-14.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	179.62	211.04	136.89	126.17	178.67	207.38	189.06	223.74	116.79
Merged-chr10-40244713-3	chr10	40244221	40245221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023323, intron 1 of 9)	intron (NM_023323, intron 1 of 9)	2258.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	25.17	36.4	47.17	41.83	36.85	41.8	57.03	53.94	38.1
Merged-chr12-100776199-3	chr12	100775689	100776689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2868.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	59.49	55.75	45.32	64.77	54.11	77.97	39.08	54.83	42.47
Merged-chr19-44562815-3	chr19	44562345	44563345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176958)	promoter-TSS (NM_176958)	-9.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	39.47	30.41	18.5	28.34	27.06	27.33	28.52	22.99	14.99
Merged-chr12-76615467-3	chr12	76614972	76615972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	ORR1D2-int|LTR|ERVL-MaLR	-67547.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	138.44	127.64	94.35	107.95	79.77	118.96	101.39	113.19	95.55
Merged-chr4-141874948-3	chr4	141874460	141875460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025994)	promoter-TSS (NM_025994)	-40.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	260.86	209.66	175.74	199.04	171.21	157.54	222.86	185.27	116.16
Merged-chr11-114765333-3	chr11	114764828	114765828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102615)	promoter-TSS (NM_001102615)	-61.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	30.89	23.5	20.35	37.11	18.66	24.11	30.63	19.9	11.24
Merged-chr18-20801758-3	chr18	20801269	20802269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	41.19	36.86	23.12	56.0	48.52	69.13	35.91	39.35	24.98
Merged-chr1-53839911-3	chr1	53839385	53840385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 22 of 28)	intron (NM_001001883, intron 22 of 28)	-9539.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	200.79	169.11	135.04	206.46	120.36	147.09	205.96	209.15	121.16
Merged-chr9-78533489-3	chr9	78532988	78533988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51764.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	268.29	308.26	191.47	290.8	329.82	257.21	271.44	357.27	149.26
Merged-chr2-31742344-3	chr2	31741842	31742842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-17597.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	18.31	23.04	9.25	24.29	13.53	24.11	14.79	13.71	8.12
Merged-chr5-146819495-3	chr5	146818981	146819981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13409.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	256.85	200.9	169.27	223.33	159.55	167.19	218.63	245.84	114.91
Merged-chr18-35703119-3	chr18	35702625	35703625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	19.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	17.73	16.59	28.67	25.64	29.39	12.86	24.29	22.99	11.24
Merged-chr15-100737860-3	chr15	100737380	100738380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	92.67	77.41	105.44	82.99	37.79	105.3	82.38	66.77	50.59
Merged-chr5-29731133-3	chr5	29730624	29731624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4774.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	34.32	28.11	12.02	47.23	33.59	24.92	22.18	24.76	17.49
Merged-chr1-121431657-3	chr1	121431236	121432236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 1 of 23)	intron (NM_029955, intron 1 of 23)	669.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	326.07	297.21	217.36	205.79	232.79	171.21	238.7	217.55	98.68
Merged-chr11-82007094-4	chr11	82006596	82007596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28481.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	217.38	170.95	136.89	194.99	116.63	100.47	158.43	138.4	98.05
Merged-chr11-20631883-3	chr11	20631374	20632374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-103.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	281.45	322.55	282.11	301.6	306.96	266.05	284.11	326.32	189.86
Merged-chr9-50567619-3	chr9	50567117	50568117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008360, intron 3 of 7)	intron (NM_008360, intron 3 of 7)	-6349.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	89.24	90.77	71.22	95.14	73.71	53.85	78.16	76.49	58.71
Merged-chrX-53716708-3	chrX	53716213	53717213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110489)	promoter-TSS (NR_110489)	-135.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	54.92	27.65	9.25	59.38	48.98	27.33	25.35	28.74	11.87
Merged-chr16-10897521-3	chr16	10896995	10897995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17302.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	5.72	6.45	3.7	8.77	4.67	3.22	9.51	2.65	3.75
Merged-chr14-57730074-3	chr14	57729564	57730564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4354.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	39.47	30.41	43.47	26.99	27.06	33.76	29.57	33.6	54.33
Merged-chr15-64197986-3	chr15	64197496	64198496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	114677.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	100.68	139.62	97.12	91.76	78.37	58.68	96.11	145.92	83.06
Merged-chr4-43973664-3	chr4	43973167	43974167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-9837.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	92.1	53.91	20.35	65.45	37.79	32.15	38.02	36.26	29.35
Merged-chr19-26605048-3	chr19	26604539	26605539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-121.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	117.27	101.83	108.22	90.41	77.91	88.42	89.78	92.41	87.43
Merged-chr4-83315509-3	chr4	83314982	83315982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	8707.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	328.36	374.62	203.49	337.36	320.96	254.8	377.06	434.21	227.33
Merged-chr1-64532881-3	chr1	64532343	64533343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009952)	promoter-TSS (NM_009952)	39.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	348.95	311.95	303.38	337.36	237.45	233.1	307.35	225.95	143.02
Merged-chr1-106759749-3	chr1	106759248	106760248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316750)	promoter-TSS (NM_001316750)	-6.0	NM_001316750	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	204.22	195.37	136.89	173.4	209.93	192.11	146.81	203.84	116.16
Merged-chr19-41335906-3	chr19	41335403	41336403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	49167.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	213.95	185.7	126.72	169.35	152.08	135.04	165.82	229.93	115.54
Merged-chr5-105702061-3	chr5	105701550	105702550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	1240.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	85.81	66.81	35.15	118.08	74.17	45.01	60.2	65.44	31.23
Merged-chr5-147077556-3	chr5	147077123	147078123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181730, exon 1 of 3)	5' UTR (NM_181730, exon 1 of 3)	277.0	NM_009087	20018.0	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	275.73	209.66	185.92	236.83	223.92	177.64	135.19	112.31	100.55
Merged-chr10-22212454-2	chr10	22211960	22212960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	38558.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	3.43	0.0	0.0	2.02	1.87	3.22	0.0	0.0	1.25
Merged-chr14-70101528-3	chr14	70101033	70102033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	1440.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	60.64	82.02	67.52	60.05	39.65	67.52	86.61	108.77	67.45
Merged-chr2-163764599-2	chr2	163764098	163765098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14359.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	165.9	172.79	62.9	207.81	211.33	196.12	10.56	11.94	1.25
Merged-chr8-25018019-3	chr8	25017505	25018505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027194, intron 1 of 3)	intron (NM_027194, intron 1 of 3)	794.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	177.34	179.71	122.09	153.16	148.82	138.25	139.42	163.16	94.3
Merged-chr1-58734240-3	chr1	58733739	58734739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 4 of 8)	intron (NM_001355056, intron 4 of 8)	3687.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	96.11	109.67	47.17	116.05	86.77	70.73	115.12	106.12	49.96
Merged-chr9-83538371-3	chr9	83537882	83538882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9956.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	31.46	44.7	47.17	36.43	60.18	68.32	31.69	30.95	33.72
Merged-chr11-108098643-2	chr11	108098138	108099138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	L1MB8|LINE|L1	101790.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	14.3	6.45	14.8	2.02	4.2	6.43	15.84	6.19	0.0
Merged-chr12-44266667-3	chr12	44266169	44267169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2485.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	16.59	10.14	14.8	10.12	15.39	9.65	16.9	15.03	12.49
Merged-chr15-68259733-3	chr15	68259241	68260241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145888)	promoter-TSS (NM_001145888)	-885.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	90.96	118.42	61.97	112.0	110.56	89.22	109.84	120.27	66.82
Merged-chr8-22962250-3	chr8	22961764	22962764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12572.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	18.31	10.6	15.72	16.19	6.53	11.25	40.14	28.3	17.49
Merged-chr5-66015187-3	chr5	66014703	66015703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10918.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	155.03	105.98	78.62	192.29	92.84	162.37	138.36	124.25	94.3
Merged-chr15-83408346-1	chr15	83407846	83408846	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	24504.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	2.86	1.38	14.8	3.37	7.0	7.23	3.17	2.65	0.0
Merged-chr16-76767805-3	chr16	76767312	76768312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	11280.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	88.67	87.55	60.12	118.75	69.51	81.99	139.42	152.55	78.07
Merged-chr16-32165487-3	chr16	32164997	32165997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347182)	promoter-TSS (NM_001347182)	97.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	181.91	137.31	119.32	116.73	122.23	131.02	181.66	156.53	131.78
Merged-chr4-116075873-3	chr4	116075395	116076395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	626.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	328.36	349.74	356.11	303.62	289.7	262.04	340.09	278.12	217.96
Merged-chr16-76604161-3	chr16	76603665	76604665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	55370.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	122.42	110.13	72.15	109.98	82.11	69.93	132.02	109.66	38.1
Merged-chr5-21332339-3	chr5	21331849	21332849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 3 of 18)	intron (NM_029195, intron 3 of 18)	-40324.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	44.62	42.39	27.75	41.83	30.79	19.29	42.25	43.77	22.48
Merged-chr7-116529997-3	chr7	116529486	116530486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 11 of 14)	ORR1B2|LTR|ERVL-MaLR	25617.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	16.02	11.52	16.65	12.82	9.8	24.92	11.62	12.38	13.74
Merged-chr5-139287292-3	chr5	139286803	139287803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33806.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	208.23	162.2	200.71	158.56	119.89	189.69	196.45	204.72	105.55
Merged-chr7-64285769-3	chr7	64285265	64286265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	32.61	34.56	38.85	33.06	24.72	22.51	32.74	21.22	13.74
Merged-chr5-148552694-3	chr5	148552210	148553210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011908)	promoter-TSS (NM_011908)	78.0	NM_011908	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	288.89	205.51	140.59	259.09	143.22	152.72	282.0	175.98	118.04
Merged-chr16-49699136-3	chr16	49698638	49699638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028680)	promoter-TSS (NM_028680)	-156.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	139.58	193.07	103.59	182.17	169.34	117.35	159.48	167.58	84.31
Merged-chr14-70949699-3	chr14	70949191	70950191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	59584.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	44.05	43.31	40.7	65.45	38.72	79.58	54.92	48.2	48.09
Merged-chr14-19968488-3	chr14	19967989	19968989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	8204.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	114.98	147.45	97.12	114.7	104.5	94.04	125.69	106.56	66.82
Merged-chr5-109751889-3	chr5	109751391	109752391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82251.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	62.35	54.83	19.42	51.28	47.12	28.13	36.97	17.69	15.61
Merged-chr6-137413183-2	chr6	137412679	137413679	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 13 of 26)	MTE2b|LTR|ERVL-MaLR	2458.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.86	7.83	11.1	60.72	32.66	46.62	24.29	31.39	33.1
Merged-chr5-121255164-3	chr5	121254679	121255679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 2 of 75)	intron (NM_181421, intron 2 of 75)	34960.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	57.78	41.47	38.85	42.51	24.26	28.94	49.64	52.18	31.23
Merged-chr11-53772716-3	chr11	53772228	53773228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	2255.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	91.53	42.39	54.57	44.53	25.66	37.78	72.88	68.98	45.59
Merged-chr2-71353829-3	chr2	71353318	71354318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	13736.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	34.32	20.74	23.12	35.09	20.06	30.54	20.07	26.09	16.24
Merged-chr5-104859817-1	chr5	104859317	104860317	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039231, exon 1 of 5)	5' UTR (NM_001039231, exon 1 of 5)	210.0	NR_155269	626391.0	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik|Gm38611	zinc finger protein 951	protein-coding	6.29	10.6	1.85	7.42	9.8	0.8	144.7	171.56	83.06
Merged-chr13-21167570-3	chr13	21167039	21168039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12392.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	26.89	23.5	5.55	11.47	13.06	6.43	19.01	11.5	5.0
Merged-chr6-108564227-1	chr6	108563727	108564727	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58940.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	10.56	18.57	7.49
Merged-chr8-70630925-3	chr8	70630437	70631437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011819, intron 1 of 1)	intron (NM_011819, intron 1 of 1)	1158.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	263.72	164.96	98.05	133.59	71.38	39.39	111.96	149.89	38.72
Merged-chr10-98799036-4	chr10	98798496	98799496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115646.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	195.07	164.5	77.7	197.69	162.34	108.51	102.45	111.43	54.33
Merged-chr9-13587296-3	chr9	13586853	13587853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32636.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	107.55	128.1	78.62	107.28	88.17	94.04	117.24	145.47	59.95
Merged-chr7-19310289-4	chr7	19309741	19310741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008036)	promoter-TSS (NM_008036)	-196.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	417.6	336.37	279.34	344.78	299.5	213.81	283.06	313.5	207.34
Merged-chr14-52280033-3	chr14	52279532	52280532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-637.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	246.56	240.99	198.87	224.68	199.67	211.4	238.7	174.21	153.01
Merged-chr10-78169856-3	chr10	78169367	78170367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138601)	promoter-TSS (NM_138601)	-99.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	49.2	51.61	39.77	55.33	42.45	63.5	57.03	57.48	22.48
Merged-chr10-58498016-3	chr10	58497524	58498524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162956)	promoter-TSS (NM_001162956)	87.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	221.38	263.57	204.41	172.73	178.21	150.31	192.23	172.45	108.67
Merged-chr6-65164353-3	chr6	65163863	65164863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19633.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	89.81	53.91	49.02	80.29	47.12	45.01	83.44	42.45	44.97
Merged-chr7-127708355-3	chr7	127707868	127708868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030428)	promoter-TSS (NR_030428)	-119.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	74.37	30.41	58.27	78.27	38.25	65.91	48.58	27.86	26.23
Merged-chr7-97581012-3	chr7	97580511	97581511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	1115.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	68.07	64.97	61.05	57.35	51.78	95.65	96.11	81.36	56.21
Merged-chr3-79591407-3	chr3	79590941	79591941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026352, exon 1 of 10)	5' UTR (NM_026352, exon 1 of 10)	104.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	124.14	136.85	113.77	188.92	189.4	109.32	151.03	181.29	66.2
Merged-chr14-62837395-3	chr14	62836916	62837916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175546)	promoter-TSS (NM_175546)	-274.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	86.95	72.34	70.3	91.09	45.25	64.3	114.07	88.88	73.07
Merged-chr17-35823086-3	chr17	35822569	35823569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008027)	promoter-TSS (NM_008027)	-288.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	236.83	131.32	102.67	176.78	80.71	79.58	164.76	164.49	84.94
Merged-chr7-30421322-1	chr7	30420822	30421822	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-409.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	335.22	370.47	278.41	310.37	217.86	316.69	322.14	415.2	219.21
Merged-chr5-31291168-3	chr5	31290632	31291632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026298)	promoter-TSS (NM_026298)	-18.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	156.74	209.2	139.67	161.26	194.07	130.21	142.59	234.35	81.19
Merged-chr17-29549733-3	chr17	29549233	29550233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162901)	promoter-TSS (NM_001162901)	-69.0	NM_198647	381085.0	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	52.06	32.72	29.6	56.0	24.26	16.08	19.01	17.69	7.49
Merged-chr3-59212573-3	chr3	59212104	59213104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	(TG)n|Simple_repeat|Simple_repeat	-1722.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	122.42	156.67	91.57	149.11	103.1	105.3	107.73	131.32	71.2
Merged-chr10-37195211-3	chr10	37194718	37195718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56292.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	187.06	199.98	130.42	178.8	176.81	172.81	156.32	184.38	119.28
Merged-chr12-25206106-3	chr12	25205588	25206588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	76914.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	64.64	54.83	37.92	77.59	58.31	52.25	30.63	43.77	24.98
Merged-chr1-132318677-3	chr1	132318167	132319167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	2542.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	50.91	46.08	67.52	82.32	50.38	69.93	68.65	60.58	39.35
Merged-chr2-144556202-3	chr2	144555644	144556644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019787)	promoter-TSS (NM_019787)	-85.0	NM_001252544	27054.0	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	203.08	223.48	175.74	174.75	146.95	143.07	213.35	214.89	93.68
Merged-chr7-126792543-3	chr7	126792055	126793055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-8.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	271.73	286.15	242.34	250.32	270.11	224.26	248.2	225.51	209.84
Merged-chr16-93833047-3	chr16	93832542	93833542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	PB1D11|SINE|Alu	921.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	234.54	260.8	201.64	164.63	181.94	189.69	268.27	299.35	143.64
Merged-chr5-121721983-3	chr5	121721472	121722472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	Tigger15a|DNA|TcMar-Tigger	10363.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	204.8	201.36	177.59	202.42	158.61	171.21	252.43	294.48	123.66
Merged-chr17-35210343-3	chr17	35209828	35210828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4977.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	441.63	320.71	169.27	369.07	229.99	184.07	285.17	382.47	129.28
Merged-chr18-73815553-3	chr18	73815036	73816036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145494)	promoter-TSS (NM_145494)	-144.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	177.91	135.01	135.97	206.46	192.67	171.21	284.11	273.26	106.79
Merged-chr10-17722393-3	chr10	17721902	17722902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-826.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	67.5	125.79	74.92	74.89	97.03	163.97	104.56	128.23	92.43
Merged-chr6-51881361-3	chr6	51880852	51881852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 9 of 12)	intron (NM_018773, intron 9 of 12)	131197.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	12.01	9.22	12.95	17.54	11.2	19.29	6.34	12.38	9.99
Merged-chr13-5605614-3	chr13	5605136	5606136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	252456.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	48.62	58.06	38.85	72.87	63.91	60.28	39.08	53.94	38.72
Merged-chr10-87675206-3	chr10	87674712	87675712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153417.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	17.73	24.88	19.42	29.69	21.46	11.25	13.73	29.18	7.49
Merged-chr12-70472870-3	chr12	70472353	70473353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	L1M2|LINE|L1	19699.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	47.48	55.29	25.9	48.58	34.99	45.82	45.42	58.37	23.73
Merged-chr11-54088460-3	chr11	54087949	54088949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12475.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	102.97	140.54	70.3	149.11	130.16	87.61	115.12	139.28	56.83
Merged-chr2-181319742-3	chr2	181319255	181320255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166665)	promoter-TSS (NM_001166665)	31.0	NM_001001882	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	53.77	35.02	33.3	52.63	40.12	58.68	62.31	61.46	37.47
Merged-chr9-14381052-3	chr9	14380542	14381542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028013, exon 1 of 2)	5' UTR (NM_028013, exon 1 of 2)	200.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	25.17	23.96	33.3	39.13	22.86	33.76	23.24	15.48	9.37
Merged-chr5-30036127-3	chr5	30035606	30036606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	22992.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	36.61	39.17	27.75	46.56	35.45	48.23	20.07	26.97	26.85
Merged-chr6-124733186-3	chr6	124732685	124733685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013545)	promoter-TSS (NM_013545)	-31.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	101.25	96.3	79.55	121.45	105.43	118.16	107.73	126.9	82.44
Merged-chr2-128746708-3	chr2	128746217	128747217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	47802.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	283.17	213.34	147.07	396.06	229.52	267.66	274.61	277.24	187.98
Merged-chr11-117109833-3	chr11	117109337	117110337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5335.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	196.79	145.61	69.37	202.42	145.55	115.75	137.3	182.62	77.44
Merged-chr4-129696778-3	chr4	129696252	129697252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199305)	promoter-TSS (NM_199305)	93.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	34.32	32.25	62.9	33.74	29.86	36.17	41.19	34.05	34.35
Merged-chr12-113074432-3	chr12	113073866	113074866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361919)	promoter-TSS (NM_001361919)	-136.0	NM_001361919	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	33.18	20.74	45.32	16.19	21.93	63.5	36.97	28.74	29.98
Merged-chr9-116102078-3	chr9	116101574	116102574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73289.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	84.09	123.03	45.32	122.12	101.23	102.08	71.82	99.49	91.81
Merged-chr11-99024311-3	chr11	99023783	99024783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011623)	promoter-TSS (NM_011623)	-94.0	NM_011623	21973.0	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	16.02	20.74	23.12	16.87	11.2	23.31	23.24	20.34	10.62
Merged-chr4-139188123-3	chr4	139187640	139188640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	91.53	85.25	57.35	94.46	48.05	53.05	77.1	59.25	21.86
Merged-chr5-65076295-3	chr5	65075807	65076807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-31261.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	16.02	13.82	10.17	16.87	13.06	9.65	10.56	9.73	9.37
Merged-chr17-29245871-3	chr17	29245366	29246366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8076.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	13.16	12.9	6.47	12.14	8.86	12.86	5.28	3.54	3.75
Merged-chr5-117287644-3	chr5	117287144	117288144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018858)	promoter-TSS (NM_018858)	-80.0	NM_018858	23980.0	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	23.45	22.58	19.42	30.36	33.12	18.49	29.57	22.11	8.74
Merged-chr14-69861598-3	chr14	69861096	69862096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	21189.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	11.44	8.29	16.65	7.42	14.0	1.61	24.29	9.29	9.99
Merged-chr12-117765025-3	chr12	117764524	117765524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78837.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.0	3.69	2.77	3.37	1.4	0.0	3.17	1.33	2.5
Merged-chr11-30649222-3	chr11	30648721	30649721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029344, intron 1 of 3)	CpG	175.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	70.93	55.75	32.37	95.81	77.44	101.28	126.74	83.13	58.08
Merged-chr2-173000082-3	chr2	172999594	173000594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-23.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	199.65	182.47	123.02	219.96	196.87	131.82	158.43	155.64	89.31
Merged-chr7-127393753-3	chr7	127393264	127394264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198011)	promoter-TSS (NM_198011)	-143.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	115.55	104.6	98.05	112.0	105.43	128.61	141.53	168.02	63.7
Merged-chr11-75173261-3	chr11	75172747	75173747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029794)	promoter-TSS (NR_029794)	-141.0	NR_029794	387208.0		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	173.9	131.32	94.35	249.65	153.95	141.47	161.6	178.19	84.31
Merged-chr11-23770326-3	chr11	23769835	23770835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	635.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	425.61	380.15	288.59	484.45	323.76	344.02	503.8	529.27	246.69
Merged-chr9-118632545-3	chr9	118632055	118633055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	25846.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	77.23	77.87	86.02	97.83	90.97	112.53	90.83	81.8	53.71
Merged-chr17-26243821-3	chr17	26243327	26244327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	415.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	271.73	229.01	146.14	267.19	150.22	172.81	264.05	317.48	140.52
Merged-chr17-37028879-3	chr17	37028362	37029362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5464.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	132.14	113.35	76.77	74.22	64.84	57.87	117.24	110.98	35.6
Merged-chr13-94098540-3	chr13	94098058	94099058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	40762.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	22.31	15.21	7.4	24.29	13.53	10.45	34.85	15.48	9.99
Merged-chr5-134352929-3	chr5	134352412	134353412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26458.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	16.59	13.82	18.5	19.57	20.53	30.54	15.84	17.69	16.24
Merged-chr2-11603222-3	chr2	11602720	11603720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152824)	promoter-TSS (NM_152824)	-21.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	180.2	144.23	179.44	216.58	176.34	160.76	177.44	137.07	97.43
Merged-chr6-71930262-3	chr6	71929776	71930776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	21223.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	93.24	93.08	81.4	91.09	61.58	86.81	79.21	94.62	69.32
Merged-chr16-4754279-3	chr16	4753783	4754783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010443, intron 1 of 5)	intron (NM_010443, intron 1 of 5)	-2663.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	150.45	135.47	79.55	177.45	174.94	153.52	159.48	202.51	107.42
Merged-chr10-121377136-3	chr10	121376650	121377650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 5 of 13)	intron (NM_029364, intron 5 of 13)	12060.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	103.54	69.58	42.55	148.44	119.89	93.24	87.66	89.76	44.97
Merged-chr1-64078548-3	chr1	64078036	64079036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-36035.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	14.87	13.36	18.5	13.49	15.39	16.88	9.51	3.1	14.36
Merged-chr9-47595430-3	chr9	47594935	47595935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	65083.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	41.19	41.47	40.7	54.65	35.92	49.83	28.52	28.3	16.24
Merged-chr18-46149708-3	chr18	46149214	46150214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49104.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	10.3	8.29	9.25	11.47	4.2	1.61	16.9	4.42	1.25
Merged-chr7-43654705-3	chr7	43654211	43655211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031181, intron 6 of 6)	intron (NM_031181, intron 6 of 6)	5450.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	29.17	23.04	16.65	28.34	14.93	24.11	25.35	21.67	26.85
Merged-chr17-87282854-3	chr17	87282418	87283418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	32.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	395.29	373.24	339.46	421.7	307.9	316.69	280.95	287.41	247.31
Merged-chr5-53195072-3	chr5	53194585	53195585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	MIR3|SINE|MIR	18367.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	36.61	48.38	24.97	42.51	35.45	47.42	25.35	18.57	19.98
Merged-chr10-7955906-2	chr10	7955397	7956397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_138667, exon 1 of 7)	5' UTR (NM_138667, exon 1 of 7)	226.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	333.51	215.65	254.36	284.06	145.08	204.16	333.75	126.02	151.14
Merged-chr11-95851055-3	chr11	95850556	95851556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-7761.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	131.0	90.31	63.82	205.79	90.04	139.06	156.32	139.28	68.7
Merged-chr18-9392764-3	chr18	9392207	9393207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	intron (NM_026484, intron 1 of 9)	57447.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	29.75	34.56	36.07	32.39	38.72	25.72	39.08	21.67	17.49
Merged-chr4-44300931-3	chr4	44300443	44301443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010790)	promoter-TSS (NM_010790)	26.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	12.01	11.52	12.95	13.49	11.2	6.43	16.9	13.27	13.74
Merged-chrX-101419870-3	chrX	101419370	101420370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177986)	promoter-TSS (NM_001177986)	44.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	32.61	25.8	24.05	37.11	27.52	43.4	32.74	38.47	30.6
Merged-chr11-98787014-3	chr11	98786530	98787530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8486.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	122.99	55.29	40.7	127.52	26.12	65.11	116.18	77.82	36.22
Merged-chr4-41529060-1	chr4	41528560	41529560	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	11623.0	NR_045726	76992.0	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	4.0	0.46	0.0	2.02	0.0	1.61	10.56	1.77	2.5
Merged-chr1-58744933-3	chr1	58744523	58745523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	14471.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	154.45	149.29	87.87	197.02	165.61	124.59	114.07	128.67	59.33
Merged-chr11-120526153-3	chr11	120525669	120526669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-4558.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	70.36	58.52	43.47	50.6	48.52	55.46	83.44	81.36	66.2
Merged-chr17-83350800-3	chr17	83350300	83351300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286567)	promoter-TSS (NM_001286567)	-131.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	205.37	137.31	146.14	188.92	135.75	159.15	186.94	164.49	95.55
Merged-chr11-20741113-3	chr11	20740634	20741634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	CpG	422.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	452.49	440.51	516.12	369.75	322.36	348.84	410.86	368.33	306.02
Merged-chr10-128345061-3	chr10	128344550	128345550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	7323.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	66.36	54.37	66.6	42.51	39.65	40.19	67.6	71.63	48.71
Merged-chr5-108132681-3	chr5	108132176	108133176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361467)	promoter-TSS (NM_001361467)	-56.0	NM_001361467	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	228.82	294.9	256.21	233.45	325.16	249.98	210.18	277.68	171.12
Merged-chr11-120519908-3	chr11	120519420	120520420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10807.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	176.76	134.55	55.5	171.38	143.68	122.18	142.59	154.32	71.2
Merged-chr14-27123698-3	chr14	27123216	27124216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20277.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	61.21	56.68	41.62	66.12	53.65	53.85	52.81	48.64	21.23
Merged-chr11-51689092-1	chr11	51688592	51689592	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-458.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	284.88	305.5	189.62	271.24	284.1	207.38	268.27	266.18	133.02
Merged-chr2-129586289-3	chr2	129585795	129586795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6544.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	308.91	237.76	168.34	256.39	164.21	116.55	156.32	199.86	138.65
Merged-chr2-23039808-1	chr2	23039308	23040308	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	CpG	433.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	380.42	379.69	344.08	356.25	301.36	293.38	361.22	387.78	239.82
Merged-chr8-122264448-3	chr8	122263942	122264942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17699.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	6.86	5.53	0.0	4.05	2.8	4.82	4.22	1.77	8.12
Merged-chr9-62980401-2	chr9	62979884	62980884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	CpG	495.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	230.54	195.37	175.74	220.63	165.61	172.81	204.9	167.58	129.9
Merged-chr9-20581394-3	chr9	20580892	20581892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172919)	promoter-TSS (NM_172919)	64.0	NM_172919	244721.0	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	13.16	11.98	9.25	12.14	7.46	26.53	19.01	11.94	13.12
Merged-chr19-12442704-3	chr19	12442168	12443168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	14763.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	240.26	182.01	106.37	246.95	157.21	172.81	232.36	285.2	141.14
Merged-chr6-5006761-3	chr6	5006254	5007254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	103434.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	60.64	66.35	49.95	67.47	53.65	53.05	57.03	80.03	36.22
Merged-chr10-122576745-3	chr10	122576293	122577293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6902.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	79.52	67.27	48.1	66.8	47.12	41.8	80.27	80.92	66.2
Merged-chr10-44381146-3	chr10	44380649	44381649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21473.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	480.53	572.75	260.84	469.6	423.59	299.81	358.05	606.65	219.21
Merged-chr9-99575858-3	chr9	99575382	99576382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031403)	promoter-TSS (NM_031403)	83.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	97.25	138.24	94.35	93.11	115.69	103.69	115.12	124.25	84.94
Merged-chr17-27571438-3	chr17	27570915	27571915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A2|LTR|ERVK	-5688.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	75.51	63.59	104.52	49.25	43.39	73.14	69.71	42.01	38.1
Merged-chr6-148946491-3	chr6	148945974	148946974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019643)	promoter-TSS (NM_019643)	-4.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	21.17	19.35	4.62	14.84	17.73	16.08	15.84	10.61	11.87
Merged-chr1-184728903-3	chr1	184728391	184729391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3602.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	140.73	68.66	65.67	113.35	53.65	95.65	103.51	80.92	66.2
Merged-chr4-141765241-1	chr4	141764741	141765741	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172338, intron 13 of 14)	intron (NM_172338, intron 13 of 14)	18566.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.43	4.15	3.7	75.57	65.31	63.5	7.39	1.77	2.5
Merged-chr11-85713658-3	chr11	85713190	85714190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	6054.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	113.27	92.62	56.42	118.08	117.09	113.33	89.78	75.17	35.6
Merged-chr17-57290410-4	chr17	57289927	57290927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11327.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	161.32	142.84	135.04	174.75	148.35	188.89	154.2	159.18	91.81
Merged-chr17-57096279-3	chr17	57095771	57096771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-8489.0	NM_009451	22153.0	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	22.88	18.89	27.75	22.27	16.79	9.65	12.67	11.94	10.62
Merged-chr9-25155965-3	chr9	25155462	25156462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4181.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	23.45	41.93	40.7	36.43	37.32	51.44	40.14	41.56	34.35
Merged-chr11-119392981-3	chr11	119392477	119393477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2505.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	135.58	157.13	92.5	150.46	149.75	153.52	201.73	248.94	122.41
Merged-chr7-108934314-3	chr7	108933825	108934825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-90.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	86.38	85.71	62.9	85.01	71.38	78.77	100.34	72.07	44.97
Merged-chr9-44407444-6	chr9	44406922	44407922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024266)	promoter-TSS (NM_024266)	126.0	NM_021789	60409.0	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	220.24	186.62	187.77	219.96	163.74	188.89	197.51	206.93	146.14
Merged-chr1-72244447-1	chr1	72243947	72244947	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	454.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	194.5	201.82	139.67	156.53	151.62	140.66	239.75	220.2	95.55
Merged-chr18-41951289-3	chr18	41950782	41951782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-88.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	26.89	19.81	29.6	35.09	39.19	51.44	22.18	19.01	13.74
Merged-chr11-103102896-3	chr11	103102417	103103417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1229.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	56.06	48.84	18.5	41.83	31.72	28.94	41.19	36.26	28.73
Merged-chr3-52198171-3	chr3	52197689	52198689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70148.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	78.94	129.48	82.32	107.95	104.5	88.42	105.62	164.04	66.82
Merged-chr17-35752777-3	chr17	35752256	35753256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19694.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	29.17	27.19	15.72	36.43	10.73	21.7	73.93	59.25	30.6
Merged-chr11-94707840-3	chr11	94707346	94708346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-3347.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	14.87	14.75	12.95	30.36	16.33	16.88	24.29	17.69	13.74
Merged-chr8-61913959-1	chr8	61913459	61914459	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11265.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	16.02	22.58	7.4	35.76	26.59	28.94	21.12	34.93	20.61
Merged-chr6-122811015-3	chr6	122810526	122811526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9158.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	310.05	295.82	246.96	315.77	292.03	213.81	273.55	289.62	172.37
Merged-chr3-52103085-3	chr3	52102580	52103580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	CpG	1926.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	165.9	125.79	150.77	158.56	140.89	184.07	177.44	172.45	107.42
Merged-chr10-51531038-3	chr10	51530547	51531547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS3|LTR|ERV1	40149.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	112.12	135.93	49.02	115.38	126.89	120.57	128.85	159.18	94.3
Merged-chr10-4432467-3	chr10	4431970	4432970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025343)	promoter-TSS (NM_025343)	-82.0	NM_001358796	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	96.68	106.9	106.37	97.83	109.63	96.45	124.63	141.94	66.2
Merged-chr15-86185810-3	chr15	86185301	86186301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	73.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	334.65	295.82	295.99	363.0	276.17	336.79	352.77	311.73	249.19
Merged-chr11-78348112-3	chr11	78347605	78348605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011676, exon 4 of 5)	exon (NM_011676, exon 4 of 5)	1395.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	50.34	35.02	40.7	39.13	16.33	53.05	53.87	42.89	51.21
Merged-chr4-155803587-3	chr4	155803108	155804108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025570, exon 2 of 5)	5' UTR (NM_025570, exon 2 of 5)	730.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	73.22	72.34	79.55	53.3	61.11	88.42	68.65	77.82	58.08
Merged-chr7-19669101-3	chr7	19668611	19669611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4081.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	71.51	51.61	50.87	76.24	41.99	62.7	57.03	61.02	44.97
Merged-chr13-100859299-3	chr13	100858789	100859789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25862.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	17.73	12.9	11.1	20.24	16.33	12.86	20.07	24.76	8.74
Merged-chr8-57429413-3	chr8	57428906	57429906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26517.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	13.73	17.51	3.7	8.77	10.26	8.04	10.56	12.38	6.25
Merged-chr13-51398008-3	chr13	51397509	51398509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10609.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	94.96	96.76	73.07	122.12	120.36	83.59	132.02	104.35	60.58
Merged-chr9-21798651-3	chr9	21798122	21799122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145611)	promoter-TSS (NM_145611)	-76.0	NM_145611	235041.0	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	33.75	54.37	31.45	36.43	51.32	81.18	60.2	41.12	29.98
Merged-chr1-93236348-3	chr1	93235823	93236823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172463, intron 1 of 30)	CpG	426.0	NM_172463	208777.0	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	35.47	21.66	20.35	34.41	16.79	17.68	20.07	11.5	32.48
Merged-chr1-87637668-3	chr1	87637154	87638154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	MLT1M|LTR|ERVL-MaLR	17342.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	88.1	91.24	97.12	89.06	96.1	110.12	92.94	103.91	78.69
Merged-chr10-93803487-1	chr10	93802987	93803987	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-28068.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.72	1.38	5.55	2.02	0.47	1.61	11.62	4.86	3.12
Merged-chr2-164785877-3	chr2	164785369	164786369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133924)	promoter-TSS (NM_133924)	-152.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	68.65	86.63	83.25	95.81	95.63	103.69	94.0	102.58	49.34
Merged-chr4-83324283-3	chr4	83323790	83324790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027238)	promoter-TSS (NM_027238)	-101.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	156.17	153.9	139.67	149.11	130.62	141.47	167.93	168.91	115.54
Merged-chr6-3345372-1	chr6	3344872	3345872	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54199.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	10.87	15.21	16.65	8.1	17.73	8.04	89.78	87.11	28.1
Merged-chr7-126502525-3	chr7	126502008	126503008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347658)	promoter-TSS (NM_001347658)	-83.0	NM_001347658	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	243.12	287.07	335.76	203.76	269.18	249.17	253.48	274.14	219.21
Merged-chr10-96751717-3	chr10	96751210	96752210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134709.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.58	2.76	7.4	20.24	11.66	8.04	4.22	2.65	12.49
Merged-chr17-70963769-3	chr17	70963281	70964281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	26735.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	3.43	4.61	15.72	6.07	1.4	8.04	2.11	2.65	17.49
Merged-chr8-71309601-1	chr8	71309101	71310101	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36887.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	70.36	62.67	72.15	108.63	79.77	133.43	85.55	55.27	51.84
Merged-chr2-27028050-3	chr2	27027529	27028529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-31.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	139.01	122.11	83.25	170.03	127.36	131.82	185.89	223.29	110.54
Merged-chr7-101896717-3	chr7	101896232	101897232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291349, intron 1 of 4)	intron (NM_001291349, intron 1 of 4)	401.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	195.07	139.62	189.62	143.71	112.9	190.5	193.28	210.03	119.28
Merged-chr15-50867085-3	chr15	50866608	50867608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	21941.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	130.43	120.73	58.27	124.15	72.78	38.58	95.06	73.4	59.33
Merged-chr5-63943495-1	chr5	63942995	63943995	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	25402.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	2.86	0.92	2.77	14.17	4.67	7.23	1.06	0.0	1.25
Merged-chr5-144283827-3	chr5	144283331	144284331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025833, intron 7 of 13)	Kanga2_a|DNA|TcMar-Tc2	6770.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	22.88	28.11	7.4	37.11	19.13	13.66	23.24	14.59	18.74
Merged-chr12-73964461-3	chr12	73963943	73964943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178392)	promoter-TSS (NM_178392)	-87.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	153.88	167.73	87.87	120.1	143.22	121.37	172.16	166.25	106.79
Merged-chr5-24827373-3	chr5	24826912	24827912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	14949.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	18.31	21.2	16.65	33.06	15.39	23.31	11.62	20.34	19.98
Merged-chr1-134420291-3	chr1	134419809	134420809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	4645.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	93.82	98.61	74.92	94.46	81.64	94.04	84.49	80.92	59.95
Merged-chr10-82953621-3	chr10	82953113	82954113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-31884.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	16.59	13.82	5.55	15.52	7.93	10.45	13.73	9.73	5.0
Merged-chr5-67845430-3	chr5	67844957	67845957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	1974.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	37.76	31.33	19.42	35.76	34.06	24.92	35.91	42.89	30.6
Merged-chr3-97768117-3	chr3	97767643	97768643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110360)	promoter-TSS (NR_110360)	-129.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	105.83	99.53	83.25	116.73	79.31	93.24	114.07	106.12	78.07
Merged-chr5-110176486-3	chr5	110176000	110177000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	4.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	255.71	234.08	129.49	256.39	179.61	162.37	254.54	220.64	129.28
Merged-chr17-70966217-3	chr17	70965669	70966669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24347.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	198.5	181.55	109.14	179.47	143.22	142.27	181.66	206.05	115.54
Merged-chr7-30280926-3	chr7	30280428	30281428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-507.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	262.57	241.45	202.56	307.67	226.26	210.59	184.83	225.95	103.67
Merged-chr7-30956071-3	chr7	30955568	30956568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011680, intron 3 of 9)	CpG-12986	735.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	169.33	108.28	97.12	170.7	119.89	122.98	214.41	79.15	57.46
Merged-chr14-64916045-3	chr14	64915541	64916541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	33816.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	117.84	124.41	80.47	103.91	86.3	85.2	107.73	154.76	91.18
Merged-chr2-152962348-3	chr2	152961827	152962827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083618)	promoter-TSS (NM_001083618)	-158.0	NM_029064	74711.0	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	20.59	11.98	12.02	29.01	16.33	20.09	25.35	33.6	13.12
Merged-chr14-40965734-3	chr14	40965246	40966246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	1150.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	44.05	51.61	46.25	51.95	52.25	53.85	52.81	45.54	44.97
Merged-chr18-36670296-3	chr18	36669758	36670758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164406)	promoter-TSS (NM_001164406)	53.0	NM_001164406	24068.0	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	370.12	358.49	214.59	412.93	383.94	258.02	383.4	387.78	189.23
Merged-chr9-65201679-3	chr9	65201183	65202183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13007.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	114.98	149.75	76.77	159.91	139.02	83.59	141.53	156.09	59.95
Merged-chr18-4257004-1	chr18	4256504	4257504	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91172.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	44.62	78.79	77.7	45.21	68.11	81.99	67.6	61.46	56.83
Merged-chr1-167308630-3	chr1	167308098	167309098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039483)	promoter-TSS (NM_001039483)	-72.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	122.42	125.79	151.69	132.24	174.47	127.0	168.99	114.96	73.07
Merged-chr8-94601838-3	chr8	94601349	94602349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026274)	promoter-TSS (NM_026274)	-92.0	NM_001359093	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	166.47	188.0	170.19	151.81	192.67	155.93	229.19	229.04	164.88
Merged-chr17-28486222-3	chr17	28485721	28486721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010220)	promoter-TSS (NM_010220)	-72.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	32.61	14.28	30.52	35.76	18.19	19.29	25.35	18.13	14.99
Merged-chr7-99143387-3	chr7	99142870	99143870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2226.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	152.17	135.01	110.07	138.32	125.49	129.41	151.03	189.25	135.52
Merged-chr11-119428959-1	chr11	119428459	119429459	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38487.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	10.3	5.07	12.02	10.12	3.27	12.86	7.39	2.65	9.37
Merged-chr12-25099579-3	chr12	25099074	25100074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3482.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	300.33	404.11	275.64	312.39	420.79	277.31	388.68	514.68	178.61
Merged-chr11-116436900-3	chr11	116436405	116437405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	2692.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	219.67	155.28	144.29	250.32	166.54	150.31	238.7	260.88	148.64
Merged-chr14-65102216-3	chr14	65101718	65102718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4112.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	84.09	88.47	36.07	76.24	66.71	51.44	85.55	102.14	78.69
Merged-chr18-55409463-3	chr18	55408967	55409967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-416876.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	34.9	43.31	31.45	20.24	14.46	24.92	17.96	21.22	16.24
Merged-chr9-96530824-3	chr9	96530332	96531332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	81.8	72.34	53.65	121.45	87.7	79.58	177.44	168.91	52.46
Merged-chr12-13249070-3	chr12	13248577	13249577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134040)	promoter-TSS (NM_134040)	97.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	30.89	41.93	33.3	49.93	49.92	49.83	52.81	35.82	24.98
Merged-chr5-92667026-3	chr5	92666516	92667516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360020, intron 3 of 9)	intron (NM_001360020, intron 3 of 9)	8111.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	13.16	12.44	11.1	20.24	10.73	12.86	20.07	15.92	11.24
Merged-chr6-125603412-3	chr6	125602906	125603906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011708, exon 14 of 52)	exon (NM_011708, exon 14 of 52)	50458.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	9.72	5.53	5.55	12.14	5.6	6.43	12.67	7.96	2.5
Merged-chr5-108434427-3	chr5	108433865	108434865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007507)	promoter-TSS (NM_007507)	34.0	NR_154996	11958.0	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	25.74	30.87	55.5	40.48	26.59	41.8	57.03	29.63	13.74
Merged-chr18-9490697-3	chr18	9490194	9491194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40540.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	101.25	50.23	16.65	184.87	156.75	40.99	145.75	107.0	16.86
Merged-chr4-40148550-3	chr4	40148074	40149074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	5309.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	77.23	69.58	49.95	103.91	48.98	73.14	88.72	74.73	54.96
Merged-chr19-56703901-3	chr19	56703390	56704390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18482.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	109.26	100.91	45.32	145.74	104.5	102.88	106.67	101.26	33.72
Merged-chr16-8823865-3	chr16	8823367	8824367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6233.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	12.59	11.52	14.8	14.17	12.6	19.29	19.01	10.61	18.74
Merged-chr17-88058099-3	chr17	88057599	88058599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	PB1D9|SINE|Alu	6833.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	25.74	41.47	35.15	25.64	37.79	38.58	49.64	61.46	33.72
Merged-chr13-51072170-3	chr13	51071683	51072683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28544.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	82.95	82.94	74.0	70.85	62.05	77.97	115.12	134.86	66.2
Merged-chr3-96269628-3	chr3	96269139	96270139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	-61.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	169.33	213.8	138.74	128.87	143.68	139.86	186.94	229.48	107.42
Merged-chr10-86705622-3	chr10	86705132	86706132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011631)	promoter-TSS (NM_011631)	-179.0	NM_001003910	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	301.47	347.89	197.02	267.86	356.88	235.51	289.39	358.16	151.76
Merged-chr17-26538238-3	chr17	26537746	26538746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23266.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	267.15	210.58	86.95	238.85	191.27	136.64	183.78	197.65	84.94
Merged-chr2-60848687-3	chr2	60848175	60849175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	32763.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	42.33	23.04	16.65	29.69	19.13	15.27	24.29	23.43	14.99
Merged-chr2-166875069-3	chr2	166874570	166875570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085495, intron 30 of 38)	intron (NM_001085495, intron 30 of 38)	-31026.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	18.31	16.13	29.6	29.69	22.86	19.29	20.07	20.78	14.99
Merged-chr17-73361193-3	chr17	73360665	73361665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033444, intron 4 of 22)	intron (NM_001033444, intron 4 of 22)	38131.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	44.62	50.69	37.92	20.24	24.26	10.45	26.4	27.86	20.61
Merged-chr2-102944248-3	chr2	102943736	102944736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42571.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	155.03	121.65	64.75	190.95	156.28	127.0	142.59	139.28	86.81
Merged-chr10-13273934-3	chr10	13273385	13274385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	50404.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	36.61	42.39	43.47	37.78	36.85	36.97	52.81	32.72	34.35
Merged-chr10-8859630-3	chr10	8859125	8860125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	26445.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	171.04	130.86	115.62	194.99	143.68	93.24	140.47	145.92	74.94
Merged-chr1-171268393-1	chr1	171267893	171268893	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1935.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	4.0	3.69	11.1	2.02	1.87	0.0	30.63	26.53	19.98
Merged-chr15-73435063-3	chr15	73434578	73435578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11887.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	20.59	17.51	14.8	16.87	16.79	17.68	14.79	12.38	6.87
Merged-chr4-107066864-3	chr4	107066323	107067323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175471)	promoter-TSS (NM_175471)	43.0	NM_025500	56280.0	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	74.37	70.04	52.72	76.24	67.64	62.7	79.21	70.3	39.97
Merged-chr17-26571588-3	chr17	26571098	26572098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	L1MD3|LINE|L1	10086.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	105.26	56.22	32.37	155.19	138.55	73.95	104.56	83.13	26.85
Merged-chr1-176814214-3	chr1	176813707	176814707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029756)	promoter-TSS (NM_029756)	-453.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	308.34	288.91	209.96	281.36	215.06	191.3	239.75	210.47	129.9
Merged-chr10-78574685-5	chr10	78574214	78575214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359303)	promoter-TSS (NM_001359303)	201.0	NM_001359301	216136.0	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	291.18	294.9	184.99	280.68	275.24	226.67	302.07	309.07	106.79
Merged-chr7-19309620-3	chr7	19309100	19310100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008036, exon 1 of 4)	5' UTR (NM_008036, exon 1 of 4)	445.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	255.14	174.64	147.07	224.01	157.68	125.39	173.21	187.48	136.15
Merged-chr3-90052673-3	chr3	90052190	90053190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165984)	promoter-TSS (NM_001165984)	-112.0	NM_001287086	99650.0	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	258.0	210.12	198.87	232.1	200.6	164.78	257.71	271.05	146.14
Merged-chr7-101851932-3	chr7	101851439	101852439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303239, intron 2 of 5)	intron (NM_001303239, intron 2 of 5)	5251.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	70.93	77.87	36.07	52.63	53.65	58.68	74.99	84.9	73.69
Merged-chr6-114268921-3	chr6	114268430	114269430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13705.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	39.47	30.41	26.82	42.51	21.46	22.51	51.75	49.52	8.74
Merged-chr12-12264306-3	chr12	12263803	12264803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	2164.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	176.19	174.64	136.89	155.86	142.75	114.94	174.27	172.89	94.93
Merged-chr5-98017004-3	chr5	98016520	98017520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	13942.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	16.59	11.98	14.8	16.87	9.8	6.43	5.28	0.88	4.37
Merged-chr17-17766680-3	chr17	17766186	17767186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	62745.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	2.86	5.53	5.55	2.02	1.87	4.02	1.06	0.88	0.0
Merged-chr17-34032268-3	chr17	34031704	34032704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-146.0	NM_001205216	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	393.57	196.75	270.09	348.83	198.27	240.33	376.0	285.2	173.62
Merged-chr19-34878054-3	chr19	34877557	34878557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023792)	promoter-TSS (NM_023792)	-140.0	NM_023792	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	75.51	75.57	49.95	49.25	36.39	49.83	64.43	59.25	39.35
Merged-chr9-32540244-3	chr9	32539739	32540739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	1213.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	271.15	238.23	185.92	263.14	200.13	177.64	192.23	194.11	153.63
Merged-chr10-41523412-3	chr10	41522898	41523898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	3898.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	64.07	87.09	43.47	56.68	44.78	48.23	51.75	60.13	51.21
Merged-chr10-61374316-3	chr10	61373814	61374814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	9209.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	24.03	26.73	45.32	14.17	14.0	25.72	33.8	25.65	19.98
Merged-chr12-76371032-3	chr12	76370521	76371521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	CpG-3289	755.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	227.68	237.76	284.89	230.08	199.2	205.77	193.28	203.4	192.98
Merged-chr8-106893209-2	chr8	106892705	106893705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	388.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	276.87	146.07	170.19	254.37	132.02	145.49	246.09	127.79	112.42
Merged-chr2-132169367-3	chr2	132168885	132169885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24065.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	69.79	70.04	55.5	62.07	57.38	72.34	82.38	87.55	53.71
Merged-chr4-8888499-3	chr4	8888014	8889014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137190.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	8.58	4.15	3.7	8.1	7.46	6.43	9.51	9.73	7.49
Merged-chr18-62046512-3	chr18	62046008	62047008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	93433.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	183.06	193.99	141.52	195.67	122.69	139.06	161.6	222.85	116.16
Merged-chr1-36082418-3	chr1	36081927	36082927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	14027.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	124.71	124.41	71.22	208.49	125.02	137.45	164.76	197.21	84.94
Merged-chr14-55886120-3	chr14	55885629	55886629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027143, intron 2 of 7)	intron (NM_027143, intron 2 of 7)	1187.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	97.25	166.8	141.52	112.68	93.3	144.68	109.84	123.36	98.68
Merged-chr13-5865505-2	chr13	5864998	5865998	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4009.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	127.0	133.17	65.67	101.21	69.51	49.03	69.71	76.49	39.97
Merged-chr3-135612961-3	chr3	135612466	135613466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 11 of 24)	intron (NM_008689, intron 11 of 24)	78581.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	12.59	16.13	7.4	14.84	11.2	16.88	23.24	11.94	21.23
Merged-chr11-118401983-3	chr11	118401482	118402482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011150)	promoter-TSS (NM_011150)	-23.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	115.55	127.64	133.19	117.4	156.75	139.86	130.97	179.96	119.91
Merged-chr4-119966894-3	chr4	119966408	119967408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	152230.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	272.3	205.51	158.17	323.19	225.79	211.4	168.99	181.73	111.17
Merged-chr11-49250588-3	chr11	49250090	49251090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110150)	promoter-TSS (NM_001110150)	38.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	141.3	121.19	139.67	148.44	126.42	142.27	108.79	121.15	118.04
Merged-chr13-92484018-3	chr13	92483544	92484544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163627)	promoter-TSS (NM_001163627)	-13.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	85.24	73.26	53.65	76.24	71.84	47.42	109.84	125.58	42.47
Merged-chr4-129033290-3	chr4	129032785	129033785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	491.39	438.21	260.84	463.53	326.56	277.31	331.64	488.59	206.72
Merged-chr4-134535323-3	chr4	134534821	134535821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029759)	promoter-TSS (NM_029759)	-53.0	NM_001355187	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	137.29	104.14	98.97	125.5	97.5	110.12	117.24	126.9	104.92
Merged-chr4-132049234-3	chr4	132048733	132049733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128606)	promoter-TSS (NM_001128606)	-155.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	34.32	16.13	14.8	39.81	20.53	33.76	41.19	21.22	7.49
Merged-chr14-70443347-3	chr14	70442834	70443834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164082)	promoter-TSS (NM_001164082)	-107.0	NM_001164082	67065.0	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	106.97	101.37	94.35	111.33	107.3	77.16	139.42	94.18	69.32
Merged-chr2-25574875-3	chr2	25574348	25575348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	23.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	76.08	95.38	84.17	113.35	99.37	99.67	134.14	84.01	43.09
Merged-chr5-125361201-3	chr5	125360713	125361713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-20119.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	34.32	22.12	20.35	27.66	9.33	8.84	26.4	19.46	10.62
Merged-chr5-129941691-3	chr5	129941223	129942223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001327)	promoter-TSS (NM_001001327)	-386.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	117.84	92.16	69.37	124.15	89.57	67.52	124.63	96.83	33.72
Merged-chr13-58999806-3	chr13	58999311	59000311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	192114.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	164.18	241.91	139.67	166.66	215.53	198.54	189.06	245.4	142.39
Merged-chr9-37255674-3	chr9	37255183	37256183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020258)	promoter-TSS (NM_020258)	55.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	205.94	183.85	146.14	201.07	246.32	145.49	153.15	172.89	97.43
Merged-chr13-74815954-1	chr13	74815454	74816454	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7194.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	3.43	3.23	1.85	4.72	4.2	12.06	8.45	1.77	3.75
Merged-chr8-41025790-2	chr8	41025300	41026300	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	MTC|LTR|ERVL-MaLR	8332.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	23.45	41.01	27.75	26.31	30.79	30.54	81.33	78.71	48.09
Merged-chr2-121289571-3	chr2	121289047	121290047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032393)	promoter-TSS (NM_032393)	-55.0	NM_032393	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	4.0	2.3	1.85	2.7	0.93	6.43	4.22	1.77	1.25
Merged-chr2-18057847-3	chr2	18057354	18058354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106115)	promoter-TSS (NR_106115)	8.0	NR_106115	102466840.0		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	332.94	359.87	229.39	230.08	201.53	217.83	236.59	255.13	177.99
Merged-chr1-77280825-3	chr1	77280327	77281327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215941.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	80.66	89.85	68.45	50.6	38.25	59.48	30.63	43.33	41.22
Merged-chr15-95790838-3	chr15	95790341	95791341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-2.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	266.0	274.63	221.06	298.23	275.24	209.79	312.63	326.32	172.99
Merged-chr11-45623649-1	chr11	45623149	45624149	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-184434.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	16.02	24.42	32.37	36.43	24.72	43.4	4.22	3.98	5.0
Merged-chrM-228-2	chrM	-225	775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											173.33	151.14	15.72	78.27	35.92	15.27	81.33	34.05	20.61
Merged-chr19-11950068-3	chr19	11949563	11950563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-15781.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	17.16	16.13	14.8	13.49	12.13	12.86	25.35	22.55	21.23
Merged-chr2-69885615-3	chr2	69885119	69886119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029280)	promoter-TSS (NM_029280)	-4.0	NR_110977	75422.0	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	56.06	64.97	80.47	60.05	63.91	84.4	65.48	96.39	64.95
Merged-chr1-138856727-3	chr1	138856162	138857162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081226, exon 1 of 3)	exon (NM_001081226, exon 1 of 3)	192.0	NM_001081226	69549.0	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	25.74	23.04	33.3	37.11	24.26	8.04	40.14	25.65	15.61
Merged-chr8-94549689-3	chr8	94549187	94550187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153507, intron 2 of 15)	ID_B1|SINE|B4	16659.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	74.94	117.5	84.17	68.15	87.7	80.38	92.94	140.17	80.56
Merged-chr2-116914162-3	chr2	116913656	116914656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14004.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	61.21	29.49	39.77	78.94	50.85	39.39	34.85	32.28	28.73
Merged-chr15-100049839-3	chr15	100049337	100050337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	11173.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	77.8	54.83	81.4	59.38	34.06	42.6	78.16	68.98	52.46
Merged-chr5-30949996-3	chr5	30949486	30950486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003522)	promoter-TSS (NR_003522)	-80.0	NR_003522	57742.0	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	56.63	50.23	31.45	56.68	33.12	54.66	58.09	59.69	45.59
Merged-chr17-87275545-3	chr17	87275023	87276023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 4 of 4)	intron (NR_015506, intron 4 of 4)	7291.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	90.96	75.57	40.7	87.04	61.11	51.44	41.19	33.16	16.24
Merged-chr12-80839851-3	chr12	80839365	80840365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	MTE2b|LTR|ERVL-MaLR	49333.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	105.83	97.23	90.65	110.65	81.17	95.65	104.56	141.49	56.21
Merged-chr8-22808630-3	chr8	22808118	22809118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2964.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	216.24	278.31	182.22	187.57	202.46	131.02	257.71	282.1	142.39
Merged-chr5-36576405-3	chr5	36575921	36576921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	5976.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	152.17	149.75	121.17	149.79	117.09	107.71	152.09	216.66	107.42
Merged-chr11-103953960-3	chr11	103953456	103954456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008740)	promoter-TSS (NM_008740)	100.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	82.95	91.7	98.97	128.87	100.77	147.9	114.07	91.97	66.2
Merged-chr5-112277199-1	chr5	112276699	112277699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	508.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	332.94	265.41	255.29	284.06	219.73	244.35	343.26	250.71	186.73
Merged-chr17-71182476-3	chr17	71181973	71182973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1059.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	65.21	70.5	53.65	63.42	67.64	57.87	43.3	66.77	48.71
Merged-chr7-13023259-3	chr7	13022775	13023775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011588)	promoter-TSS (NM_011588)	-877.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	30.89	18.43	24.97	22.94	20.53	25.72	15.84	21.22	10.62
Merged-chr11-103258406-3	chr11	103257910	103258910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	8991.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	91.53	73.26	66.6	80.29	50.38	84.4	74.99	59.25	58.08
Merged-chr7-130657959-3	chr7	130657465	130658465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-34591.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	30.89	38.71	16.65	13.49	9.8	11.25	13.73	2.65	6.25
Merged-chr19-4065098-3	chr19	4064598	4065598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-5651.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	24.6	24.88	17.57	16.87	23.33	33.76	32.74	38.91	19.98
Merged-chr4-8917381-3	chr4	8916874	8917874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166050.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	52.06	29.95	30.52	59.38	20.53	35.37	45.42	37.14	46.84
Merged-chr14-75195743-3	chr14	75195242	75196242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-46545.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	74.94	108.28	67.52	82.99	64.84	73.14	62.31	71.63	38.72
Merged-chr9-100866230-3	chr9	100865719	100866719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	168665.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	34.9	32.25	3.7	24.29	18.66	12.06	13.73	14.59	23.73
Merged-chrX-109120019-3	chrX	109119526	109120526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	24619.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	99.54	81.56	49.95	68.15	62.05	65.91	65.48	81.36	49.96
Merged-chr7-28179402-3	chr7	28178903	28179903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010092)	promoter-TSS (NM_010092)	-80.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	29.17	36.86	30.52	35.09	34.06	37.78	34.85	36.7	33.1
Merged-chr8-22476910-3	chr8	22476406	22477406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-27.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	286.03	176.48	224.76	293.5	202.0	196.12	250.32	179.96	114.29
Merged-chr7-141475288-3	chr7	141474781	141475781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053082)	promoter-TSS (NM_053082)	45.0	NM_053082	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	129.28	97.23	74.0	101.88	98.43	100.47	120.41	100.37	43.72
Merged-chr8-72583246-2	chr8	72582753	72583753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357280, intron 4 of 4)	ORR1D2|LTR|ERVL-MaLR	11430.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	60.64	75.11	76.77	0.0	1.4	4.82	94.0	91.09	66.82
Merged-chr14-26643428-3	chr14	26642922	26643922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	5288.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	71.51	82.48	47.17	73.54	55.51	58.68	70.76	73.84	49.34
Merged-chr15-100039065-1	chr15	100038565	100039565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	CpG	401.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	515.99	357.11	264.54	525.6	370.41	278.91	381.28	358.6	227.33
Merged-chr17-47508147-3	chr17	47507666	47508666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	3115.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	95.53	88.47	62.9	97.83	67.18	90.02	96.11	148.13	72.45
Merged-chr5-102031068-3	chr5	102030559	102031559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	38862.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	201.93	217.03	153.54	242.9	170.74	217.02	261.93	347.1	144.89
Merged-chr12-16877707-3	chr12	16877202	16878202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17276.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	166.47	188.0	118.39	156.53	147.42	98.06	137.3	156.97	131.15
Merged-chr11-70445631-3	chr11	70445153	70446153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	129.86	118.42	111.92	109.3	65.31	98.87	89.78	128.67	94.93
Merged-chr16-17146914-3	chr16	17146409	17147409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026940)	promoter-TSS (NM_026940)	-58.0	NM_026940	69101.0	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	10.3	4.61	1.85	7.42	6.53	3.22	17.96	6.63	0.0
Merged-chr18-73754453-3	chr18	73753970	73754970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	9.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	191.64	154.82	108.22	137.64	104.96	130.21	159.48	87.99	79.32
Merged-chr11-87019640-3	chr11	87019137	87020137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25875.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	30.89	16.59	9.25	94.46	53.65	45.01	79.21	103.02	49.96
Merged-chr13-106813419-3	chr13	106813019	106814019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 29 of 30)	intron (NM_001360897, intron 29 of 30)	123439.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	47.48	37.78	35.15	66.12	39.19	57.87	36.97	61.9	40.59
Merged-chr6-145211052-3	chr6	145210549	145211549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133688)	promoter-TSS (NM_133688)	-79.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	131.57	163.12	131.34	143.04	173.54	106.1	192.23	243.63	113.04
Merged-chr3-96489219-1	chr3	96488719	96489719	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35966.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.67	0.0	0.0	86.61	110.98	59.33
Merged-chr11-58960200-3	chr11	58959709	58960709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1502.0	NM_001318003	382523.0		NM_001318003		Gm12260	H3t	predicted gene 12260	protein-coding	68.07	63.59	49.95	30.36	33.12	47.42	160.54	198.98	121.16
Merged-chr11-119925408-3	chr11	119924916	119925916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	11606.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	56.63	49.3	40.7	60.05	59.71	83.59	57.03	64.11	49.96
Merged-chr12-102252737-3	chr12	102252242	102253242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-30332.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	8.01	9.22	4.62	10.8	14.93	8.04	6.34	7.52	2.5
Merged-chr5-25101372-3	chr5	25100875	25101875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145401)	promoter-TSS (NM_145401)	400.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	29.75	20.27	20.35	89.74	81.64	138.25	30.63	27.86	23.11
Merged-chr2-30237602-3	chr2	30237077	30238077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028299)	promoter-TSS (NR_028299)	54.0	NR_028299	67350.0	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	239.12	187.54	173.89	266.51	212.73	147.09	251.37	231.25	100.55
Merged-chr5-137787329-3	chr5	137786827	137787827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144913)	promoter-TSS (NM_144913)	-4.0	NM_001360023	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	240.83	225.78	199.79	197.69	161.88	176.83	195.39	256.46	139.27
Merged-chr13-95494983-1	chr13	95494483	95495483	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16328.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	1.72	1.84	3.7	1.35	3.27	1.61	116.18	94.18	64.33
Merged-chr10-80475495-3	chr10	80474994	80475994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19412.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	5.72	7.37	3.7	10.8	6.06	4.02	7.39	7.52	9.99
Merged-chr7-114892833-3	chr7	114892335	114893335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55815.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	35.47	42.39	35.15	13.49	19.59	44.21	26.4	25.65	29.35
Merged-chr4-62286478-3	chr4	62285982	62286982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025286)	promoter-TSS (NM_025286)	53.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	130.43	124.87	178.52	120.1	113.83	112.53	227.08	169.35	106.17
Merged-chr9-58266669-3	chr9	58266175	58267175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13511.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	62.35	37.78	27.75	75.57	53.65	58.68	85.55	68.98	74.32
Merged-chr11-20201872-3	chr11	20201368	20202368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	CpG	456.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	626.97	666.29	407.9	576.88	622.79	463.79	597.8	629.2	297.9
Merged-chr7-35169532-3	chr7	35169026	35170026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16859.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	8.01	9.22	0.0	6.07	4.67	4.82	13.73	7.96	5.62
Merged-chr19-4060840-3	chr19	4060349	4061349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1402.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	109.83	122.57	113.77	137.64	116.63	142.27	89.78	108.77	103.05
Merged-chr15-100615361-3	chr15	100614831	100615831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011873)	promoter-TSS (NM_011873)	-221.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	397.58	264.03	305.23	385.26	272.91	261.23	276.72	314.82	182.36
Merged-chr17-33890798-3	chr17	33890309	33891309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-176.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	26.89	17.05	9.25	21.59	12.13	8.04	11.62	5.75	12.49
Merged-chr2-140778358-3	chr2	140777870	140778870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-106894.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	33.18	26.73	10.17	29.69	23.33	19.29	20.07	13.27	14.99
Merged-chr7-35056620-3	chr7	35056107	35057107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-41.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	388.42	372.77	281.19	352.2	281.3	242.74	363.33	379.82	221.08
Merged-chr14-76964197-3	chr14	76963683	76964683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72434.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	24.6	22.12	3.7	45.21	35.92	12.06	6.34	5.31	8.74
Merged-chr16-88487945-3	chr16	88487431	88488431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19047.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	6.29	5.53	9.25	11.47	8.86	16.08	9.51	11.5	6.25
Merged-chr2-79757933-1	chr2	79757433	79758433	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 3 of 4)	intron (NM_001290743, intron 3 of 4)	50153.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	4.58	4.61	2.77	7.42	5.6	4.02	10.56	12.82	9.99
Merged-chr5-123906648-3	chr5	123906163	123907163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-612.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	256.28	211.96	132.27	211.19	155.81	119.76	155.26	233.02	90.56
Merged-chr15-98881468-3	chr15	98880963	98881963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026967)	promoter-TSS (NM_026967)	-49.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	53.77	46.54	40.7	61.4	41.52	41.8	58.09	54.83	28.1
Merged-chr7-88192894-3	chr7	88192382	88193382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-85203.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	33.75	48.84	24.97	40.48	36.85	49.03	47.53	41.12	24.98
Merged-chr4-120570103-3	chr4	120569616	120570616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355491)	promoter-TSS (NM_001355491)	160.0	NM_016748	51797.0	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	76.66	61.75	54.57	85.01	62.98	76.36	99.28	68.09	41.84
Merged-chr15-39771056-3	chr15	39770578	39771578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	25148.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	31.46	17.97	14.8	44.53	26.12	31.35	50.7	27.41	16.86
Merged-chr2-66144963-3	chr2	66144481	66145481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20188.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	48.05	58.52	38.85	72.87	66.71	62.7	47.53	53.5	42.47
Merged-chrX-140956778-3	chrX	140956263	140957263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016883)	promoter-TSS (NM_016883)	-52.0	NM_001164177	53380.0	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	41.76	50.69	13.87	47.23	25.19	32.15	64.43	55.27	37.47
Merged-chr12-85596394-2	chr12	85595891	85596891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2714.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	36.61	13.82	9.25	35.09	10.73	20.9	24.29	12.82	9.99
Merged-chr18-31634980-3	chr18	31634478	31635478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-150.0	NM_001357555	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	128.71	144.23	151.69	176.1	237.92	289.36	101.39	108.33	74.32
Merged-chr12-78350959-3	chr12	78350452	78351452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 2 of 23)	LSU-rRNA_Hsa|rRNA|rRNA	124297.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	14.3	14.75	14.8	6.75	4.67	4.82	9.51	3.54	18.11
Merged-chr10-8884566-3	chr10	8884052	8885052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	MIRb|SINE|MIR	1518.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	205.37	290.29	117.47	221.98	247.25	164.78	215.46	248.94	109.92
Merged-chr19-3321789-3	chr19	3321308	3322308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	86.95	71.42	69.37	66.12	81.64	80.38	113.01	101.7	64.33
Merged-chr7-80294347-3	chr7	80293859	80294859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285998)	promoter-TSS (NM_001285998)	-92.0	NM_145150	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	37.76	27.19	16.65	33.74	20.06	27.33	38.02	30.07	19.98
Merged-chr17-65783806-3	chr17	65783287	65784287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	CpG-6545	432.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	127.57	132.25	135.97	144.39	93.3	124.59	170.05	135.75	100.55
Merged-chr6-145746553-5	chr6	145746020	145747020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-61863.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	42.33	22.12	7.4	64.1	35.45	48.23	27.46	11.05	10.62
Merged-chr2-69206237-3	chr2	69205731	69206731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305800)	promoter-TSS (NM_001305800)	-18.0	NM_001199123	66442.0	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	38.9	26.26	15.72	44.53	62.51	32.15	27.46	42.89	9.37
Merged-chr6-108570531-3	chr6	108570026	108571026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52641.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	54.35	55.75	32.37	107.95	107.3	99.67	65.48	61.02	28.73
Merged-chr4-111721654-3	chr4	111721168	111722168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	1658.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	36.04	59.44	45.32	31.71	34.06	40.99	52.81	71.19	58.71
Merged-chr18-62164495-4	chr18	62164048	62165048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	15433.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	108.69	133.17	67.52	107.28	78.37	87.61	90.83	81.36	64.33
Merged-chr4-102558072-3	chr4	102557564	102558564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-11996.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	36.61	19.81	6.47	22.94	6.06	14.47	24.29	15.92	9.37
Merged-chr3-121885071-3	chr3	121884546	121885546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68183.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	2.29	2.3	3.7	1.35	1.87	2.41	2.11	4.86	0.0
Merged-chr15-27665810-3	chr15	27665305	27666305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	15737.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	211.09	176.02	127.64	167.33	145.08	194.52	160.54	175.54	139.27
Merged-chr12-79168581-1	chr12	79168081	79169081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	3877.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	4.0	6.45	9.25	159.23	129.22	143.07	3.17	0.88	5.0
Merged-chr4-124936994-3	chr4	124936506	124937506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177573)	promoter-TSS (NM_177573)	-42.0	NM_177573	194268.0	Mm.266907	NM_177573	ENSMUSG00000044730	9930104L06Rik	C1orf109	RIKEN cDNA 9930104L06 gene	protein-coding	30.32	30.41	36.07	23.62	26.12	29.74	26.4	31.39	21.86
Merged-chr9-108854603-3	chr9	108854106	108855106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	563.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	149.31	134.09	115.62	182.85	146.48	128.61	154.2	170.23	74.94
Merged-chr4-106881275-3	chr4	106880789	106881789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-30181.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	9.15	5.07	1.85	4.05	3.73	9.65	8.45	1.33	8.74
Merged-chr1-161520263-5	chr1	161519761	161520761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25604.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	80.66	87.09	74.92	105.93	40.12	56.27	81.33	65.0	56.83
Merged-chr8-104631389-3	chr8	104630869	104631869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-48.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	30.32	22.12	19.42	21.59	14.46	17.68	26.4	20.78	16.86
Merged-chr7-38018658-3	chr7	38018156	38019156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	896.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	172.19	202.28	140.59	171.38	221.13	186.48	220.74	164.04	106.79
Merged-chr6-117431534-4	chr6	117431015	117432015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63720.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	58.92	66.35	37.0	39.13	43.39	45.82	71.82	54.83	54.96
Merged-chr2-117914104-3	chr2	117913601	117914601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	92173.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	9.72	7.37	3.7	9.45	8.4	13.66	8.45	6.63	1.25
Merged-chr5-112355666-3	chr5	112355178	112356178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039228, exon 1 of 1)	exon (NM_001039228, exon 1 of 1)	355.0	NM_001039228	625424.0	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	17.73	26.26	44.4	33.06	17.73	38.58	27.46	22.55	16.24
Merged-chr15-100761731-3	chr15	100761235	100762235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021530)	promoter-TSS (NM_021530)	-12.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	69.79	50.69	37.0	33.74	21.93	18.49	34.85	54.39	13.74
Merged-chr6-39222722-3	chr6	39222209	39223209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-15936.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	58.35	23.5	30.52	76.24	32.19	30.54	46.47	31.84	22.48
Merged-chr11-84597779-3	chr11	84597271	84598271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72111.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	76.66	87.09	96.2	45.88	47.12	77.16	51.75	72.52	50.59
Merged-chr10-117063903-3	chr10	117063419	117064419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358767)	promoter-TSS (NM_001358767)	-67.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	180.77	174.18	113.77	145.74	158.61	145.49	119.35	134.42	88.68
Merged-chr18-60806700-3	chr18	60806206	60807206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2857.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	275.16	203.21	126.72	174.08	112.43	132.63	207.01	258.23	139.27
Merged-chr7-83616432-3	chr7	83615906	83616906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 18 of 22)	intron (NM_177695, intron 18 of 22)	-15611.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	59.49	70.5	58.27	56.0	54.58	62.7	70.76	67.21	48.71
Merged-chr9-66882594-3	chr9	66882117	66883117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37088.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	131.57	149.29	116.54	170.7	151.15	118.16	128.85	138.4	84.94
Merged-chr13-23746547-3	chr13	23746033	23747033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175664)	promoter-TSS (NM_175664)	-201.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	303.76	346.05	186.84	296.2	304.63	240.33	240.81	345.33	206.72
Merged-chr14-55735999-3	chr14	55735496	55736496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9688.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	215.09	218.41	153.54	219.96	135.29	150.31	230.25	318.36	124.28
Merged-chr11-3164559-2	chr11	3164073	3165073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 9 of 33)	exon (NM_030207, exon 9 of 33)	28890.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	62.93	105.52	147.07	92.44	125.49	168.8	1.06	0.88	181.74
Merged-chr9-110131967-3	chr9	110131450	110132450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009211)	promoter-TSS (NM_009211)	-74.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	74.37	64.05	101.74	78.94	68.58	102.88	82.38	65.44	70.57
Merged-chr17-33394686-3	chr17	33394185	33395185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009542)	promoter-TSS (NM_009542)	-48.0	NM_009542	22643.0	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	32.61	51.61	38.85	36.43	32.66	35.37	60.2	46.43	29.35
Merged-chr9-21453200-3	chr9	21452698	21453698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	28290.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	54.92	54.37	29.6	53.98	27.99	51.44	28.52	38.03	32.48
Merged-chr11-75460186-3	chr11	75459672	75460672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	393.0	402.26	226.61	379.87	331.22	299.81	342.2	493.9	198.6
Merged-chr14-18331803-3	chr14	18331306	18332306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009455)	promoter-TSS (NM_009455)	38.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	74.94	47.46	71.22	76.24	41.52	57.07	79.21	34.93	49.34
Merged-chr4-149326016-3	chr4	149325520	149326520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8619.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	5.72	5.07	16.65	14.84	7.0	7.23	7.39	1.77	21.23
Merged-chr18-75000582-3	chr18	75000067	75001067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028552).2	promoter-TSS (NR_028552).2	90.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	323.78	246.98	175.74	334.66	229.52	188.89	238.7	230.37	150.51
Merged-chr13-81741218-3	chr13	81740717	81741717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028372, intron 1 of 1)	intron (NM_028372, intron 1 of 1)	29800.0	NM_028372	72852.0	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	20.02	15.21	18.5	20.92	24.72	29.74	15.84	8.84	23.73
Merged-chr7-51862258-3	chr7	51861764	51862764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115087)	promoter-TSS (NM_001115087)	3.0	NM_001115087	100040608.0	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	64.07	64.97	82.32	80.97	62.05	96.45	107.73	55.27	54.33
Merged-chr17-74454849-3	chr17	74454369	74455369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	4239.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	122.42	122.11	98.97	98.51	94.7	104.49	104.56	99.93	68.7
Merged-chr5-29993786-3	chr5	29993292	29994292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19322.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	21.74	39.63	24.05	28.34	11.66	23.31	23.24	38.47	23.73
Merged-chr2-116942546-3	chr2	116942028	116943028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42376.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	157.31	124.87	87.87	185.55	118.96	129.41	113.01	122.92	66.2
Merged-chr7-119896025-5	chr7	119895543	119896543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173408)	promoter-TSS (NM_173408)	182.0	NM_001285960	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	275.73	264.95	218.29	267.19	223.92	221.04	286.23	294.48	169.25
Merged-chr4-123014173-3	chr4	123013689	123014689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2404.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	9.72	11.52	1.85	8.1	4.67	0.0	4.22	3.1	6.25
Merged-chr2-158144927-1	chr2	158144427	158145427	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1465.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	339.23	336.83	320.96	398.08	374.14	319.1	420.36	488.59	219.83
Merged-chr1-170924700-3	chr1	170924192	170925192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160215, intron 1 of 4)	intron (NM_001160215, intron 1 of 4)	2891.0	NM_145141	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	26.31	21.66	29.6	19.57	31.72	32.15	31.69	34.05	24.98
Merged-chr5-31468003-3	chr5	31467500	31468500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360001, intron 5 of 12)	ORR1E|LTR|ERVL-MaLR	15564.0	NM_001360000	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	96.11	90.77	56.42	71.52	76.97	77.16	82.38	88.88	60.58
Merged-chr13-12460633-3	chr13	12460155	12461155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291057, intron 1 of 8)	intron (NM_001291057, intron 1 of 8)	1083.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	161.32	223.94	172.04	146.41	188.94	165.58	180.61	258.23	148.64
Merged-chr3-54277368-2	chr3	54276881	54277881	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 4 of 11)	intron (NM_001253682, intron 4 of 11)	-83726.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	6.86	10.6	12.95	22.94	15.39	32.15	32.74	36.26	19.98
Merged-chr12-8498652-3	chr12	8498148	8499148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007483, exon 1 of 1)	3' UTR (NM_007483, exon 1 of 1)	1361.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	124.14	122.57	127.64	140.34	125.49	98.87	149.98	139.28	113.04
Merged-chr12-40585060-3	chr12	40584543	40585543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	138990.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	270.01	283.38	159.09	232.1	182.87	154.33	186.94	252.48	124.91
Merged-chr11-9404206-1	chr11	9403706	9404706	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 35 of 61)	intron (NM_178259, intron 35 of 61)	212264.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.0	1.84	3.7	2.7	4.2	0.0	3.17	0.0	2.5
Merged-chr18-23844765-3	chr18	23844258	23845258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	40788.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	116.13	111.97	95.27	104.58	59.25	65.11	114.07	173.77	64.95
Merged-chr17-86658019-1	chr17	86657519	86658519	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011104)	TTS (NM_011104)	-95845.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.58	2.3	1.85	5.4	3.73	3.22	5.28	1.33	5.62
Merged-chrX-134585585-3	chrX	134585062	134586062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019865)	promoter-TSS (NM_019865)	-92.0	NM_019865	19982.0	Mm.286408	NM_019865	ENSMUSG00000079435	Rpl36a	L44L|Rpl44	ribosomal protein L36A	protein-coding	37.76	49.76	33.3	48.58	38.72	47.42	44.36	42.01	18.74
Merged-chr18-88894238-3	chr18	88893741	88894741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018821)	promoter-TSS (NM_018821)	-34.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	105.26	70.5	65.67	103.91	64.84	75.56	95.06	42.01	43.72
Merged-chr6-119479339-3	chr6	119478858	119479858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-310.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	133.29	75.11	96.2	109.3	46.18	82.79	113.01	41.12	61.2
Merged-chr15-84192199-3	chr15	84191695	84192695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178614)	promoter-TSS (NM_178614)	-38.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	122.99	140.54	114.69	135.62	126.42	132.63	152.09	126.02	78.69
Merged-chr8-13650858-1	chr8	13650358	13651358	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	26729.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	32.61	23.96	33.3	35.09	17.73	44.21	29.57	42.45	18.74
Merged-chr9-63384888-3	chr9	63384378	63385378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7026.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	41.76	32.25	12.02	81.64	60.65	34.56	47.53	42.01	13.12
Merged-chr9-21291369-3	chr9	21290874	21291874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009878)	promoter-TSS (NM_009878)	-165.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	66.36	88.47	54.57	68.15	42.45	80.38	71.82	72.07	59.33
Merged-chr2-45113094-3	chr2	45112599	45113599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110572, exon 3 of 3)	non-coding (NR_110572, exon 3 of 3)	153.0	NM_001355290	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	153.31	155.75	98.05	165.98	130.16	140.66	173.21	222.41	100.55
Merged-chr11-107469862-3	chr11	107469359	107470359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	CpG	861.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	328.36	362.64	308.93	372.44	385.34	355.27	355.93	433.32	271.05
Merged-chr7-5014786-3	chr7	5014298	5015298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025324)	promoter-TSS (NM_025324)	-70.0	NM_001110328	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	170.47	229.01	158.17	180.15	167.01	162.37	218.63	217.55	123.03
Merged-chr7-141379741-3	chr7	141379240	141380240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12420.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	58.92	63.13	35.15	50.6	43.39	90.02	72.88	72.52	61.2
Merged-chr11-16969867-3	chr11	16969329	16970329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18419.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	99.54	94.92	80.47	81.64	50.85	87.61	45.42	54.39	59.95
Merged-chr4-120054354-3	chr4	120053857	120054857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-106849.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	73.79	66.81	35.15	105.26	82.11	63.5	50.7	54.39	24.36
Merged-chr11-86484534-3	chr11	86484043	86485043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-114.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	338.66	329.92	224.76	295.53	294.37	260.43	245.04	312.61	154.26
Merged-chr6-48537577-2	chr6	48537082	48538082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347164)	promoter-TSS (NM_001347164)	13.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	31.46	29.03	37.92	34.41	38.72	40.99	3.17	0.88	3.75
Merged-chr10-52382532-3	chr10	52382018	52383018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199272)	promoter-TSS (NM_001199272)	-394.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	144.73	156.67	111.92	116.05	112.9	115.75	108.79	117.17	82.44
Merged-chr8-76902167-3	chr8	76901667	76902667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083906)	promoter-TSS (NM_001083906)	-341.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	133.29	101.37	43.47	157.88	135.75	127.8	92.94	81.8	79.94
Merged-chr19-5794142-3	chr19	5793618	5794618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1863.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	86.95	30.41	23.12	46.56	20.99	44.21	27.46	15.03	35.6
Merged-chr7-101949168-3	chr7	101948655	101949655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15298.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	54.92	57.14	102.67	29.69	28.92	31.35	70.76	68.09	39.35
Merged-chr13-6889651-3	chr13	6889166	6890166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-240895.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	19.45	18.89	20.35	18.89	19.13	20.9	31.69	12.82	21.86
Merged-chr6-145341948-3	chr6	145341468	145342468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45657.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	221.96	233.62	165.57	234.13	236.05	135.04	216.52	287.41	116.79
Merged-chrX-7574771-2	chrX	7574270	7575270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290574)	promoter-TSS (NM_001290574)	-489.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	57.21	31.79	42.55	51.28	36.85	45.82	47.53	39.35	24.36
Merged-chr3-129429596-3	chr3	129429077	129430077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	31.46	53.91	31.45	39.81	49.45	39.39	44.36	52.62	31.23
Merged-chr6-47878033-1	chr6	47877533	47878533	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146175, intron 1 of 7)	CpG	478.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	24.03	24.88	35.15	45.88	31.26	61.09	45.42	17.69	26.85
Merged-chr10-67596831-3	chr10	67596358	67597358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24899.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	147.02	116.12	74.92	232.1	145.08	155.13	181.66	149.89	76.19
Merged-chr3-90323408-3	chr3	90322919	90323919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18235.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	81.23	68.66	39.77	103.91	90.04	58.68	69.71	93.3	35.6
Merged-chrX-159255723-3	chrX	159255233	159256233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148945)	promoter-TSS (NM_148945)	-49.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	66.36	41.93	31.45	55.33	36.85	57.07	48.58	44.66	44.97
Merged-chr10-120220175-3	chr10	120219663	120220663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026617, intron 3 of 6)	intron (NM_026617, intron 3 of 6)	-6897.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	132.14	122.11	65.67	116.73	96.1	98.06	114.07	136.19	54.33
Merged-chr11-61930330-3	chr11	61929825	61930825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-68.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	436.48	493.96	346.86	383.91	436.65	334.38	376.0	549.61	239.19
Merged-chr13-74260762-3	chr13	74260246	74261246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 2 of 9)	intron (NM_001317351, intron 2 of 9)	31585.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	197.93	287.99	215.51	203.09	233.25	174.42	186.94	256.01	156.13
Merged-chr17-15774109-3	chr17	15773618	15774618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52468.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	13.73	15.21	12.95	18.89	10.73	13.66	22.18	28.74	8.74
Merged-chr9-15710286-3	chr9	15709794	15710794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	556.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	284.31	222.1	255.29	277.31	256.11	241.94	255.6	234.35	158.63
Merged-chr2-26902940-3	chr2	26902432	26903432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-45.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	86.95	74.65	96.2	68.82	87.24	94.85	86.61	97.28	61.83
Merged-chr9-14500541-3	chr9	14500052	14501052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	-67.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	116.7	144.23	133.19	113.35	141.82	141.47	141.53	115.41	88.68
Merged-chr18-47370415-1	chr18	47369915	47370915	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1545.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	2.29	1.38	0.0	1.35	2.33	3.22	1.06	1.77	1.87
Merged-chr5-92278194-3	chr5	92277703	92278703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163687)	promoter-TSS (NM_001163687)	-22.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	120.7	117.96	86.02	122.8	104.96	85.2	96.11	110.98	81.19
Merged-chr17-84095307-3	chr17	84094814	84095814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	16654.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	86.38	71.42	76.77	88.39	74.64	80.38	64.43	46.87	44.97
Merged-chr10-84338937-3	chr10	84338435	84339435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101536.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	94.96	111.51	73.07	106.61	81.17	88.42	118.29	119.83	74.94
Merged-chr11-114917288-2	chr11	114916778	114917778	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17108.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	21.74	14.28	17.57	72.19	64.38	69.93	41.19	44.22	34.35
Merged-chr14-31160681-3	chr14	31160194	31161194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 11 of 68)	intron (NM_138672, intron 11 of 68)	7947.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	170.47	120.73	73.07	188.25	123.62	141.47	229.19	201.63	96.18
Merged-chr19-5489197-3	chr19	5488695	5489695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153768)	promoter-TSS (NR_153768)	-816.0	NR_153769	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	90.38	94.46	102.67	51.95	48.52	65.91	90.83	106.56	89.93
Merged-chr9-65565038-3	chr9	65564516	65565516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	RMER15|LTR|ERVL	15071.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	171.04	112.89	107.29	156.53	102.63	163.17	119.35	126.46	94.3
Merged-chr14-61774377-3	chr14	61773877	61774877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92004.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	40.04	45.62	46.25	61.4	34.06	53.85	44.36	40.68	26.23
Merged-chr6-94500338-3	chr6	94499835	94500835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026255)	promoter-TSS (NM_026255)	21.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	94.96	77.41	63.82	80.29	113.83	125.39	117.24	106.56	32.48
Merged-chr7-47051966-3	chr7	47051461	47052461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1321.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	164.18	158.97	141.52	188.25	126.42	158.35	233.42	220.2	89.31
Merged-chr10-85185263-3	chr10	85184740	85185740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-186.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	402.73	346.97	205.34	394.71	390.0	217.83	395.01	358.6	161.13
Merged-chr6-125165666-3	chr6	125165158	125166158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008084, exon 1 of 7)	5' UTR (NM_008084, exon 1 of 7)	115.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	212.8	172.33	170.19	210.51	118.49	155.93	192.23	195.44	145.51
Merged-chr2-14249949-3	chr2	14249439	14250439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	(GA)n|Simple_repeat|Simple_repeat	-11064.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	129.28	161.74	96.2	129.55	90.97	99.67	106.67	153.87	80.56
Merged-chr8-124663319-3	chr8	124662813	124663813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175149)	promoter-TSS (NM_175149)	56.0	NM_175149	69551.0	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	53.2	33.18	37.0	59.38	31.26	67.52	57.03	27.86	17.49
Merged-chr7-64279723-3	chr7	64279201	64280201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-7969.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	89.81	79.25	16.65	81.64	50.38	38.58	47.53	48.2	23.11
Merged-chr3-159839681-3	chr3	159839165	159840165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026582)	promoter-TSS (NM_026582)	15.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	32.04	37.32	26.82	47.23	48.05	36.17	36.97	33.16	25.61
Merged-chr3-61363802-3	chr3	61363306	61364306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028712)	promoter-TSS (NM_028712)	-701.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	100.68	131.78	105.44	110.65	125.96	146.29	137.3	171.12	111.79
Merged-chr1-161528344-3	chr1	161527845	161528845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33688.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	25.17	21.2	16.65	32.39	20.99	19.29	17.96	13.27	18.11
Merged-chr13-18785917-1	chr13	18785417	18786417	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 5 of 28)	intron (NM_172120, intron 5 of 28)	68625.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	13.73	5.99	20.35	3.37	4.67	14.47	23.24	30.95	22.48
Merged-chr13-20794098-3	chr13	20793612	20794612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281854)	promoter-TSS (NM_001281854)	-1.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	129.86	101.37	86.95	128.2	82.57	77.16	190.11	153.43	89.31
Merged-chr17-80139011-3	chr17	80138537	80139537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 2 of 6)	intron (NM_176963, intron 2 of 6)	11566.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	19.45	17.05	12.95	35.76	29.39	32.15	21.12	12.82	16.24
Merged-chr8-123236265-3	chr8	123235762	123236762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357300)	promoter-TSS (NM_001357300)	-4.0	NM_030176	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	36.61	34.56	20.35	39.13	27.52	17.68	31.69	31.39	21.86
Merged-chr1-153899887-3	chr1	153899377	153900377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106194)	promoter-TSS (NR_106194)	-49.0	NR_106194	102466257.0		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	78.37	61.28	66.6	114.03	77.91	100.47	137.3	131.77	61.2
Merged-chrX-38373331-3	chrX	38372819	38373819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57197.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	11.44	7.37	1.85	6.07	10.26	8.04	14.79	8.4	3.75
Merged-chr9-57765159-3	chr9	57764693	57765693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007713, exon 1 of 13)	exon (NM_007713, exon 1 of 13)	667.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	610.38	711.91	505.95	553.94	696.03	491.11	548.16	532.81	384.71
Merged-chr10-34113484-3	chr10	34112992	34113992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	14480.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	30.32	29.03	23.12	38.46	19.59	24.11	22.18	18.57	13.12
Merged-chr18-61555191-3	chr18	61554693	61555693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146087)	promoter-TSS (NM_146087)	-80.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	315.2	351.12	319.11	267.19	327.02	263.64	296.79	309.96	216.09
Merged-chr2-129380389-3	chr2	129379896	129380896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18D_MM|LTR|ERVK	-9257.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	270.01	245.6	104.52	184.2	145.08	147.9	158.43	202.07	114.91
Merged-chr10-58406076-3	chr10	58405567	58406567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	11694.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	58.92	50.23	67.52	53.98	25.19	42.6	35.91	36.26	41.22
Merged-chr14-70618253-3	chr14	70617720	70618720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360025, intron 2 of 15)	CpG	349.0	NM_001252666	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	5.15	3.23	1.85	14.84	6.06	0.0	7.39	1.77	3.75
Merged-chr14-49066509-3	chr14	49066001	49067001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-48.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	201.36	209.66	202.56	191.62	189.87	215.42	170.05	145.03	134.9
Merged-chr1-105981049-3	chr1	105980532	105981532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	9250.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	315.77	275.09	192.39	331.29	287.84	194.52	292.56	383.8	156.76
Merged-chr5-93205427-3	chr5	93204923	93205923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 1 of 6)	intron (NM_017367, intron 1 of 6)	1072.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	75.51	88.47	76.77	69.5	107.3	52.25	122.52	96.83	31.85
Merged-chr13-4942701-1	chr13	4942201	4943201	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-333537.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.0	0.46	7.4	1.35	1.87	4.82	9.51	8.84	23.11
Merged-chr5-64381010-3	chr5	64380549	64381549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	86893.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	160.18	143.76	123.02	130.22	95.63	100.47	146.81	138.4	104.3
Merged-chr5-64241443-3	chr5	64240947	64241947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	11090.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	164.18	164.5	115.62	168.0	130.16	118.96	114.07	147.24	99.3
Merged-chr11-80176028-3	chr11	80175529	80176529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-7843.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	160.75	179.25	133.19	166.66	106.36	208.18	189.06	206.93	103.05
Merged-chr13-34253753-3	chr13	34253245	34254245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	90781.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	140.73	179.25	109.14	137.64	122.69	131.82	111.96	134.86	66.2
Merged-chr10-81571768-3	chr10	81571303	81572303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3484.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	27.46	49.3	37.0	37.11	66.71	49.03	50.7	62.79	38.1
Merged-chr6-113661234-3	chr6	113660705	113661705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	22738.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	401.01	337.29	215.51	409.55	278.97	267.66	367.55	393.97	163.0
Merged-chr5-140649140-3	chr5	140648645	140649645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175274)	promoter-TSS (NM_175274)	-114.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	96.11	62.67	67.52	89.06	61.58	86.81	114.07	85.78	49.34
Merged-chr6-72159959-3	chr6	72159456	72160456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36759.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	60.64	41.93	57.35	51.95	48.98	53.05	39.08	50.41	38.72
Merged-chr13-115900385-2	chr13	115899843	115900843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	409345.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	10.87	11.98	7.4	62.75	55.51	41.8	45.42	53.5	37.47
Merged-chr15-73090823-3	chr15	73090378	73091378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053068, intron 1 of 2)	CpG	466.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	232.83	252.51	146.14	209.84	225.79	151.11	232.36	207.38	109.92
Merged-chr2-34783214-2	chr2	34782699	34783699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11109.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	24.6	3.23	2.77	6.75	3.27	7.23	1.06	4.86	6.25
Merged-chr12-69296769-3	chr12	69296260	69297260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027117)	promoter-TSS (NM_027117)	79.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	73.79	43.31	44.4	93.11	62.98	75.56	77.1	65.0	51.21
Merged-chr1-179803818-3	chr1	179803333	179804333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026375, exon 1 of 36)	5' UTR (NM_026375, exon 1 of 36)	182.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	100.11	87.55	85.1	116.73	81.64	86.81	111.96	76.49	48.09
Merged-chr3-116508161-3	chr3	116507649	116508649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025517)	promoter-TSS (NM_025517)	26.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	28.03	20.27	12.02	37.78	17.73	15.27	39.08	14.59	26.23
Merged-chr11-31803647-1	chr11	31803147	31804147	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	20900.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	5.15	11.06	7.4	13.49	11.2	9.65	4.22	6.63	3.75
Merged-chr15-76701450-3	chr15	76700949	76701949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-93.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	67.5	87.09	107.29	75.57	98.43	110.12	114.07	128.67	64.33
Merged-chr17-24414578-3	chr17	24414093	24415093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	-53.0	NM_001357626	19826.0	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	187.63	163.58	121.17	168.68	156.28	147.9	186.94	212.24	94.3
Merged-chr2-11429763-3	chr2	11429251	11430251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31251.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	150.45	109.21	90.65	211.86	135.29	80.38	143.64	125.58	63.7
Merged-chr6-122819890-3	chr6	122819390	122820390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021899)	promoter-TSS (NM_021899)	-294.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	251.13	189.38	138.74	155.86	155.81	132.63	272.5	196.76	126.15
Merged-chr17-87405749-3	chr17	87405203	87406203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029298, intron 5 of 6)	intron (NM_029298, intron 5 of 6)	22038.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	64.07	56.68	31.45	55.33	56.91	67.52	38.02	41.12	19.98
Merged-chr4-84884361-3	chr4	84883858	84884858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177385)	promoter-TSS (NM_177385)	49.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	30.32	22.12	50.87	37.78	24.26	30.54	48.58	29.18	25.61
Merged-chr7-101649068-3	chr7	101648578	101649578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14690.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	134.43	150.22	85.1	132.92	103.56	91.63	79.21	84.01	34.97
Merged-chr19-6941503-3	chr19	6941100	6942100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007522)	promoter-TSS (NM_007522)	-93.0	NM_001177362	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	89.24	63.59	75.85	75.57	76.97	111.73	78.16	68.98	56.21
Merged-chr6-122604483-3	chr6	122603987	122604987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008108)	TTS (NM_008108)	-2043.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	70.93	70.04	49.02	66.8	35.92	38.58	86.61	65.88	62.45
Merged-chr17-50157544-3	chr17	50157049	50158049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32948.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	210.52	239.15	94.35	192.97	193.6	130.21	240.81	258.23	105.55
Merged-chr1-64737861-3	chr1	64737379	64738379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022721)	promoter-TSS (NM_022721)	-129.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	24.03	19.35	37.92	41.83	29.39	45.01	41.19	27.41	21.23
Merged-chr16-35903186-3	chr16	35902694	35903694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31812.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	318.06	282.92	148.92	208.49	178.67	180.85	317.91	358.16	166.12
Merged-chr18-5986006-3	chr18	5985508	5986508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150090.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	19.45	11.06	1.85	20.92	21.93	28.13	17.96	9.73	6.87
Merged-chr8-13595016-3	chr8	13594513	13595513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32552.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	129.28	141.0	104.52	122.8	139.49	112.53	117.24	118.5	80.56
Merged-chr5-64923139-3	chr5	64922629	64923629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9570.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	50.34	52.99	60.12	49.93	43.85	43.4	35.91	38.47	52.46
Merged-chr8-71463661-3	chr8	71463145	71464145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022419)	promoter-TSS (NM_022419)	12.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	64.64	51.15	29.6	64.1	48.98	65.91	55.98	51.73	37.47
Merged-chr17-57011462-3	chr17	57010957	57011957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133801)	promoter-TSS (NM_133801)	-169.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	208.8	260.34	164.64	232.1	227.66	133.43	160.54	185.27	109.92
Merged-chr2-131258916-3	chr2	131258402	131259402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3106.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	66.93	62.67	62.9	49.25	37.79	32.15	74.99	87.99	60.58
Merged-chr1-135659684-2	chr1	135659190	135660190	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60373.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.0	3.69	11.1	143.04	114.76	94.04	51.75	41.56	23.73
Merged-chr2-51934970-3	chr2	51934530	51935530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141982)	promoter-TSS (NM_001141982)	133.0	NM_030243	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	59.49	74.65	52.72	85.01	76.97	69.13	76.05	84.45	60.58
Merged-chr14-121985700-3	chr14	121985187	121986187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-20494.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	53.77	56.22	25.9	49.25	58.78	42.6	53.87	48.2	33.1
Merged-chr18-9790971-1	chr18	9790471	9791471	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	MTD|LTR|ERVL-MaLR	83323.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	21.74	29.95	15.72	42.51	39.65	32.15	3.17	6.63	13.12
Merged-chr12-33083596-3	chr12	33083091	33084091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 2 of 19)	intron (NM_001024478, intron 2 of 19)	9284.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	1.72	3.69	2.77	7.42	1.87	1.61	4.22	1.77	0.0
Merged-chr6-145342961-3	chr6	145342462	145343462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-44663.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	146.45	165.42	121.17	162.61	146.02	116.55	164.76	223.29	102.42
Merged-chr9-14842590-3	chr9	14842106	14843106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17604.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	10.87	15.21	23.12	13.49	17.26	17.68	14.79	15.92	14.99
Merged-chr16-87455376-1	chr16	87454876	87455876	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024258, intron 1 of 17)	CpG	391.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	344.95	299.51	244.19	328.59	292.5	233.1	284.11	255.13	166.12
Merged-chr6-90462534-3	chr6	90462043	90463043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023184)	promoter-TSS (NM_023184)	-33.0	NM_001355668	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	98.97	59.9	33.3	68.15	40.12	21.7	62.31	37.14	9.37
Merged-chr16-95797363-3	chr16	95796848	95797848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94941.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	17.16	10.14	4.62	16.87	10.73	8.04	31.69	6.63	13.12
Merged-chr11-104550239-1	chr11	104549739	104550739	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	381.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	398.15	640.03	326.51	367.05	605.99	395.46	424.59	503.63	256.68
Merged-chr14-40937312-3	chr14	40936813	40937813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10896.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	92.1	88.93	69.37	96.48	71.38	69.93	43.3	55.71	56.21
Merged-chr12-3686697-3	chr12	3686180	3687180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	113696.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	72.65	57.6	60.12	58.03	61.11	46.62	59.15	87.11	44.97
Merged-chr10-80398953-3	chr10	80398457	80399457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306143, intron 1 of 6)	CpG	574.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	378.13	245.6	292.29	420.35	265.91	221.85	336.92	268.84	171.75
Merged-chr14-14633331-3	chr14	14632836	14633836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69689.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	78.37	77.87	44.4	48.58	56.45	52.25	49.64	42.45	33.1
Merged-chr3-109031698-1	chr3	109031198	109032198	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4091.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.29	6.91	4.62	24.96	14.46	32.15	23.24	14.59	16.86
Merged-chr3-83885344-3	chr3	83884822	83885822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43714.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	19.45	15.67	7.4	38.46	15.39	43.4	28.52	22.11	13.74
Merged-chr19-5388777-3	chr19	5388297	5389297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016882)	promoter-TSS (NM_016882)	-94.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	122.99	84.32	65.67	117.4	76.04	108.51	98.23	107.0	64.33
Merged-chr5-48372380-3	chr5	48371885	48372885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025755)	promoter-TSS (NM_025755)	-7.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	32.04	37.32	45.32	45.21	37.32	53.05	49.64	29.18	36.22
Merged-chr17-71526979-3	chr17	71526479	71527479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023294)	promoter-TSS (NM_023294)	-122.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	195.07	194.45	153.54	126.17	181.47	140.66	246.09	253.8	143.02
Merged-chr4-155891777-3	chr4	155891278	155892278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	-16.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	101.25	106.9	117.47	67.47	91.9	86.81	109.84	112.31	69.95
Merged-chr17-34411324-1	chr17	34410824	34411824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163855, intron 1 of 23)	intron (NM_001163855, intron 1 of 23)	12504.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	5.15	4.61	0.0	0.0	0.47	0.0	3.17	1.33	1.25
Merged-chr16-5011832-3	chr16	5011340	5012340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133185, intron 4 of 10)	intron (NM_133185, intron 4 of 10)	1713.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	54.35	36.86	30.52	39.81	29.39	25.72	25.35	26.09	18.11
Merged-chr8-94377194-3	chr8	94376679	94377679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9250.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	78.37	53.45	26.82	53.98	21.46	48.23	48.58	32.28	31.23
Merged-chr13-113486651-3	chr13	113486159	113487159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	16185.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	332.36	288.45	127.64	313.07	210.86	205.77	276.72	330.74	136.15
Merged-chr4-103313785-3	chr4	103313292	103314292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-54.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	81.8	87.55	134.12	81.64	64.38	81.99	106.67	54.39	68.7
Merged-chr11-120041947-3	chr11	120041467	120042467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-186.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	329.5	262.65	205.34	412.25	309.3	286.95	315.8	352.41	142.39
Merged-chr13-109261981-3	chr13	109261463	109262463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-62781.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	19.45	20.27	3.7	32.39	15.86	25.72	23.24	19.01	12.49
Merged-chr19-10279865-3	chr19	10279369	10280369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25008.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	206.51	160.35	90.65	206.46	137.15	131.02	104.56	117.62	49.96
Merged-chr17-64592486-3	chr17	64591979	64592979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9170.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	109.83	89.39	68.45	101.88	102.17	102.88	99.28	67.21	48.71
Merged-chr3-27690286-3	chr3	27689798	27690798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	20154.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	267.72	244.68	167.42	299.57	248.65	159.95	230.25	299.79	143.02
Merged-chr18-70472415-3	chr18	70471926	70472926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289649)	promoter-TSS (NM_001289649)	-28.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	58.35	32.25	52.72	56.0	42.45	39.39	99.28	81.8	26.85
Merged-chr8-10006601-3	chr8	10006111	10007111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033622)	promoter-TSS (NM_033622)	-22.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	28.6	34.1	16.65	22.94	20.06	12.86	27.46	17.69	6.87
Merged-chr7-114079522-3	chr7	114079024	114080024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	38257.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	75.51	92.62	56.42	62.75	65.78	52.25	129.91	143.26	61.83
Merged-chr14-31336618-3	chr14	31336126	31337126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360187)	promoter-TSS (NM_001360187)	-12.0	NM_001360187	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	240.26	185.7	153.54	215.23	163.74	186.48	205.96	199.86	112.42
Merged-chr17-64617989-3	chr17	64617484	64618484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	16335.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	45.19	27.65	14.8	44.53	46.18	18.49	32.74	27.86	3.75
Merged-chr16-87664081-3	chr16	87663574	87664574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34880.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	44.05	37.78	29.6	49.93	55.98	42.6	50.7	41.56	23.11
Merged-chr10-121586825-3	chr10	121586299	121587299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-5.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	559.47	482.44	344.08	600.5	429.19	303.83	552.38	480.64	243.57
Merged-chr18-61726315-3	chr18	61725817	61726817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	14.0	NM_021296	17714.0	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	188.21	190.76	114.69	191.62	210.86	161.56	189.06	172.0	111.17
Merged-chr9-65542352-3	chr9	65541812	65542812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	37775.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	448.49	374.62	173.89	525.6	439.45	285.34	396.07	558.02	176.74
Merged-chr15-83149123-3	chr15	83148602	83149602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004432)	promoter-TSS (NR_004432)	276.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	503.98	409.64	266.39	463.53	444.58	346.43	433.04	387.34	229.83
Merged-chr3-105910650-3	chr3	105910149	105911149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	6228.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	32.04	13.36	12.95	30.36	24.26	20.09	27.46	24.32	27.48
Merged-chr14-63122642-3	chr14	63122128	63123128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	CpG	166.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	202.51	178.78	145.22	230.75	164.68	214.61	252.43	240.54	127.4
Merged-chr9-66946379-2	chr9	66945882	66946882	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361106)	promoter-TSS (NM_001361106)	-31.0	NM_001361106	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	161.32	188.46	155.39	172.05	173.54	170.4	133.08	141.49	106.79
Merged-chr5-108629179-2	chr5	108628678	108629678	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028223)	promoter-TSS (NM_028223)	599.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	325.5	370.93	273.79	317.79	327.02	260.43	324.25	286.97	227.95
Merged-chr19-5572947-3	chr19	5572455	5573455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4931.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	121.85	138.24	87.87	130.9	133.42	152.72	140.47	173.33	99.3
Merged-chr2-156857505-3	chr2	156857023	156858023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015591, intron 1 of 2)	intron (NR_015591, intron 1 of 2)	5422.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	94.39	126.72	97.12	93.11	89.1	85.2	88.72	116.73	59.95
Merged-chr4-11156355-3	chr4	11155860	11156860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021897)	promoter-TSS (NM_021897)	-81.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	186.49	209.66	150.77	213.89	243.52	171.21	188.0	214.45	112.42
Merged-chr9-114805239-4	chr9	114804691	114805691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-23198.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	34.9	19.35	8.32	45.88	42.45	18.49	58.09	39.8	9.99
Merged-chr11-79528186-3	chr11	79527675	79528675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033711, exon 2 of 2)	5' UTR (NM_001033711, exon 2 of 2)	2434.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	266.58	283.38	158.17	249.65	216.46	149.5	192.23	302.0	149.26
Merged-chr14-50834701-1	chr14	50834201	50835201	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 41 of 54)	RLTR12B|LTR|ERVK	26785.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	125.28	111.97	71.22	114.7	91.44	106.9	162.65	138.84	95.55
Merged-chr16-36697823-1	chr16	36697323	36698323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	3845.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.29	3.69	1.85	4.05	6.53	3.22	10.56	8.84	2.5
Merged-chr9-21220690-3	chr9	21220200	21221200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18632.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	81.23	80.18	46.25	109.98	126.89	49.83	146.81	167.58	54.96
Merged-chr15-82016266-3	chr15	82015764	82016764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134095)	promoter-TSS (NM_134095)	-44.0	NM_001356541	28075.0	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	72.65	41.01	37.92	66.8	54.11	79.58	88.72	62.79	47.46
Merged-chrX-100626002-3	chrX	100625494	100626494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028303)	promoter-TSS (NM_028303)	-53.0	NM_001356384	72621.0	Mm.291607	NM_028303	ENSMUSG00000015668	Pdzd11	1810012H22Rik|2310079D11Rik|2700099C19Rik|AI854765|Pdzk11	PDZ domain containing 11	protein-coding	88.1	90.77	53.65	57.35	84.9	53.05	99.28	77.82	35.6
Merged-chr2-32982146-3	chr2	32981633	32982633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-50.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	53.2	55.29	36.07	53.3	41.05	52.25	55.98	58.37	30.6
Merged-chr13-98925664-3	chr13	98925159	98926159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 1 of 23)	intron (NM_178716, intron 1 of 23)	725.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	344.38	397.66	247.89	318.47	409.59	281.33	307.35	311.73	191.73
Merged-chrX-74368667-3	chrX	74368176	74369176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145405)	promoter-TSS (NM_145405)	-128.0	NM_145405	27643.0	Mm.3979	NM_145405	ENSMUSG00000015290	Ubl4a	DXHXS254E|DXS254E|DXS254Eh|Gdx|Ubl4	ubiquitin-like 4A	protein-coding	27.46	28.57	51.8	43.86	46.18	58.68	61.26	46.87	23.11
Merged-chr11-114884896-3	chr11	114884398	114885398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	192.78	141.46	126.72	218.61	137.15	158.35	132.02	129.11	102.42
Merged-chr4-132529490-3	chr4	132529007	132530007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5907.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	57.21	45.62	58.27	54.65	43.39	45.82	57.03	57.92	50.59
Merged-chr19-34231776-1	chr19	34231276	34232276	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360720)	promoter-TSS (NM_001360720)	-849.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	14.3	9.22	9.25	14.84	16.33	16.08	21.12	20.34	16.24
Merged-chr6-21959121-3	chr6	21958651	21959651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	Lx9|LINE|L1	9536.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	40.04	44.24	43.47	46.56	39.19	51.44	57.03	51.29	40.59
Merged-chr2-103796043-3	chr2	103795538	103796538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	1040.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	225.96	239.15	162.79	222.66	249.58	214.61	255.6	303.77	187.98
Merged-chr10-80160012-3	chr10	80159497	80160497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	CpG	-7842.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	126.42	109.67	120.24	141.02	73.71	113.33	138.36	157.85	71.82
Merged-chr7-16874353-3	chr7	16873845	16874845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	541.0	NR_152128	320950.0	Mm.420078	NR_152128	ENSMUSG00000097842	9330104G04Rik	-	RIKEN cDNA 9330104G04 gene	ncRNA	79.52	121.19	89.72	83.66	129.22	113.33	83.44	167.14	82.44
Merged-chr5-139366039-3	chr5	139365542	139366542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	3703.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	98.39	73.26	107.29	107.28	56.45	110.92	136.25	124.25	57.46
Merged-chr3-101800024-3	chr3	101799531	101800531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36192.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	36.61	23.5	9.25	20.92	29.86	23.31	4.22	17.69	5.0
Merged-chr6-72538912-3	chr6	72538406	72539406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5485.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	57.21	59.44	27.75	54.65	62.51	57.07	65.48	55.27	47.46
Merged-chr15-9428076-3	chr15	9427568	9428568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7960.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	6.86	7.37	3.7	9.45	7.0	7.23	5.28	5.31	3.75
Merged-chr13-56135527-3	chr13	56135030	56136030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159514)	promoter-TSS (NM_001159514)	20.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	266.0	165.88	160.02	207.14	139.95	142.27	269.33	137.96	108.04
Merged-chr10-94360903-3	chr10	94360393	94361393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	L1M4|LINE|L1	48944.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	30.32	24.88	26.82	56.0	31.72	41.8	44.36	21.67	29.98
Merged-chr8-119839787-3	chr8	119839285	119840285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	794.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	250.56	253.43	171.12	233.45	218.79	158.35	266.16	240.1	135.52
Merged-chr17-71179058-3	chr17	71178571	71179571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-4461.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	145.87	123.49	170.19	171.38	169.81	165.58	143.64	194.55	104.3
Merged-chr15-44427529-3	chr15	44427042	44428042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-569.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	74.94	90.31	47.17	91.76	54.11	58.68	67.6	65.88	43.09
Merged-chr10-117792804-3	chr10	117792283	117793283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134010)	promoter-TSS (NM_134010)	-78.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	140.73	124.41	86.95	128.87	112.43	137.45	107.73	132.65	71.82
Merged-chr2-11778508-3	chr2	11778004	11779004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	751.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	65.79	90.77	91.57	89.06	84.44	116.55	110.9	126.46	67.45
Merged-chr15-50696121-3	chr15	50695597	50696597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	192952.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	29.17	25.34	11.1	40.48	28.46	59.48	15.84	13.71	11.24
Merged-chr3-36552594-3	chr3	36552093	36553093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-13.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	51.48	33.64	46.25	34.41	21.46	44.21	39.08	31.84	27.48
Merged-chr5-103692297-3	chr5	103691799	103692799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36567.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	101.83	100.45	105.44	87.04	67.18	81.18	103.51	123.36	69.32
Merged-chr1-131911449-1	chr1	131910949	131911949	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	991.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	285.45	245.6	219.21	282.03	208.06	205.77	302.07	312.17	149.89
Merged-chr9-40455583-5	chr9	40455105	40456105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172768, exon 1 of 20)	exon (NM_172768, exon 1 of 20)	159.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	66.36	73.26	40.7	57.35	60.18	53.05	48.58	44.22	31.23
Merged-chr17-7430519-3	chr17	7430007	7431007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45202.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	8.01	11.06	7.4	8.1	5.6	16.08	21.12	9.29	18.74
Merged-chr9-66832632-3	chr9	66832136	66833136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	2070.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	233.97	203.67	149.84	240.87	204.8	194.52	216.52	228.6	128.03
Merged-chr16-76370251-3	chr16	76369752	76370752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	2797.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	61.78	42.85	21.27	55.33	33.12	33.76	65.48	46.43	43.09
Merged-chr8-36815042-3	chr8	36814535	36815535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-81981.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	43.48	41.01	21.27	80.29	42.92	54.66	54.92	39.35	39.97
Merged-chr5-139384795-3	chr5	139384332	139385332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	4193.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	246.56	142.38	132.27	224.68	152.08	159.95	124.63	87.99	85.56
Merged-chr13-75788399-3	chr13	75787888	75788888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51497.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	13.73	24.42	7.4	26.99	14.0	22.51	25.35	22.55	28.1
Merged-chr1-152612893-3	chr1	152612401	152613401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	12316.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	120.13	121.65	82.32	141.69	113.36	99.67	118.29	99.93	59.33
Merged-chr6-86371462-3	chr6	86370919	86371919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026506)	promoter-TSS (NM_026506)	-121.0	NM_026506	68011.0	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	272.3	241.91	178.52	210.51	228.59	175.23	235.53	270.16	110.54
Merged-chr15-12008267-3	chr15	12007738	12008738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-12231.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	9.72	14.28	0.0	7.42	7.93	2.41	13.73	8.4	2.5
Merged-chr10-50763170-3	chr10	50762667	50763667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 34 of 41)	intron (NM_198007, intron 34 of 41)	-132484.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	66.93	79.72	42.55	62.07	61.11	81.18	82.38	85.34	56.21
Merged-chr11-121451908-3	chr11	121451399	121452399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029878)	promoter-TSS (NM_029878)	-50.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	8.58	7.37	13.87	14.17	12.6	25.72	11.62	11.5	8.74
Merged-chr17-5570457-3	chr17	5569949	5570949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77849.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	256.28	258.96	172.04	368.4	346.15	221.04	299.96	376.73	156.76
Merged-chr4-63410772-3	chr4	63410290	63411290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7345.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	24.6	12.9	9.25	22.94	15.39	21.7	23.24	23.43	9.99
Merged-chr10-53881401-3	chr10	53880920	53881920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130511.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	20.02	22.58	15.72	28.34	18.66	29.74	20.07	23.88	19.36
Merged-chr13-113617787-1	chr13	113617287	113618287	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	777.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	370.69	318.86	335.76	352.88	301.36	403.5	316.86	312.61	261.68
Merged-chr10-77537817-1	chr10	77537317	77538317	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	7469.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	106.4	62.21	76.77	89.74	48.98	78.77	87.66	77.38	44.97
Merged-chr3-55829016-3	chr3	55828517	55829517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 38 of 57)	intron (NM_030595, intron 38 of 57)	-18088.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	12.01	22.58	12.95	22.27	20.06	17.68	21.12	16.36	8.74
Merged-chr18-57826570-1	chr18	57826070	57827070	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34237.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	4.0	3.23	0.92	7.42	8.86	12.06	3.17	0.44	2.5
Merged-chr15-30610832-3	chr15	30610344	30611344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-428282.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	60.07	76.95	40.7	40.48	40.12	46.62	83.44	62.79	48.09
Merged-chr15-103486828-3	chr15	103486325	103487325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153505, exon 25 of 31)	exon (NM_153505, exon 25 of 31)	-16209.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	18.31	28.11	37.0	19.57	18.19	32.15	22.18	13.27	23.73
Merged-chr9-63716350-3	chr9	63715856	63716856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	41638.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	32.04	10.6	9.25	39.13	11.2	14.47	38.02	24.76	9.37
Merged-chr2-172398180-3	chr2	172397667	172398667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	4373.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	32.04	22.58	11.1	45.88	27.06	26.53	45.42	42.01	18.11
Merged-chr15-84982087-3	chr15	84981607	84982607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	5864.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	74.37	76.03	77.7	83.66	95.17	58.68	91.89	123.36	63.7
Merged-chr11-61267263-3	chr11	61266743	61267743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007437)	promoter-TSS (NM_007437)	-57.0	NM_007437	11671.0	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	166.47	182.47	159.09	172.73	231.85	216.22	166.88	150.34	106.17
Merged-chr16-22095957-3	chr16	22095470	22096470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	ORR1F|LTR|ERVL-MaLR	67329.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	11.44	10.14	3.7	17.54	13.06	16.88	12.67	5.31	6.25
Merged-chr5-121848951-3	chr5	121848448	121849448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-49.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	76.08	67.27	78.62	70.85	41.05	100.47	85.55	52.18	38.1
Merged-chr2-145822147-3	chr2	145821649	145822649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	36033.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	327.79	288.91	159.09	336.01	260.31	161.56	243.98	351.52	99.92
Merged-chr11-29705406-3	chr11	29704916	29705916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194051, intron 1 of 8)	intron (NM_194051, intron 1 of 8)	11642.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	74.94	116.12	48.1	72.19	55.51	62.7	74.99	96.39	46.22
Merged-chr1-16571125-3	chr1	16570596	16571596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073122, exon 5 of 5)	non-coding (NR_073122, exon 5 of 5)	48242.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	42.33	34.56	21.27	37.78	34.06	32.96	54.92	34.93	18.11
Merged-chr9-44965636-3	chr9	44965127	44966127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346698)	promoter-TSS (NM_001346698)	-27.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	154.45	176.48	116.54	119.43	129.22	120.57	139.42	148.57	61.83
Merged-chr10-62792361-3	chr10	62791859	62792859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	9.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	204.8	172.79	135.97	226.03	185.67	148.7	254.54	202.07	98.68
Merged-chr16-91685718-3	chr16	91685214	91686214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021720, intron 3 of 9)	intron (NM_021720, intron 3 of 9)	3014.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	72.08	61.75	29.6	90.41	46.18	57.07	33.8	42.01	24.36
Merged-chr10-51451753-3	chr10	51451272	51452272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28840.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	117.84	177.86	106.37	136.97	138.55	139.06	138.36	149.01	80.56
Merged-chr10-84440737-3	chr10	84440250	84441250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-279.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	165.9	175.56	176.67	149.79	161.41	176.03	180.61	148.57	103.05
Merged-chr2-166906412-3	chr2	166905907	166906907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023565, intron 1 of 24)	CpG	311.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	505.7	448.34	300.61	543.15	494.03	331.16	387.62	477.1	227.95
Merged-chr14-27187010-4	chr14	27186507	27187507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	RSINE1|SINE|B4	43014.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	104.11	88.01	86.95	124.15	77.44	109.32	113.01	88.43	63.08
Merged-chr5-99382944-3	chr5	99382453	99383453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-130026.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	203.08	156.21	105.44	227.38	189.4	151.11	197.51	240.98	101.8
Merged-chr12-72844386-3	chr12	72843885	72844885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73380.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	37.18	74.65	45.32	44.53	55.51	61.09	50.7	57.48	43.09
Merged-chr13-25020334-3	chr13	25019845	25020845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013389)	promoter-TSS (NM_001013389)	-28.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	128.14	69.12	94.35	132.92	102.63	108.51	163.71	70.3	48.71
Merged-chr6-120453372-3	chr6	120452862	120453862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9835.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	20.59	18.43	17.57	53.98	35.45	36.17	22.18	30.51	11.24
Merged-chr14-117625503-3	chr14	117625012	117626012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	328335.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	9.15	13.82	11.1	19.57	11.2	4.82	10.56	2.21	6.87
Merged-chr5-139409576-3	chr5	139409069	139410069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	3182.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	66.36	62.21	48.1	91.09	70.91	89.22	53.87	54.83	59.95
Merged-chr18-46280686-4	chr18	46280128	46281128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172627, intron 1 of 8)	CpG	222.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	231.68	232.24	139.67	209.84	204.33	196.12	316.86	283.43	203.6
Merged-chr10-39171296-3	chr10	39170785	39171785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7491.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	12.01	11.98	16.65	20.92	20.53	17.68	16.9	15.48	11.24
Merged-chr2-127080113-3	chr2	127079594	127080594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	MTD|LTR|ERVL-MaLR	9437.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	257.42	222.56	214.59	298.23	173.54	200.95	272.5	235.23	156.76
Merged-chr2-30828332-3	chr2	30827767	30828767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133346)	promoter-TSS (NM_133346)	33.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	68.07	81.56	75.85	89.74	122.23	90.02	83.44	92.41	60.58
Merged-chr18-60733535-3	chr18	60733040	60734040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348102)	promoter-TSS (NM_001348102)	-399.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	126.42	128.1	122.09	86.36	88.64	114.94	124.63	157.85	84.94
Merged-chr2-37431282-3	chr2	37430779	37431779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	-360.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	99.54	82.02	94.35	98.51	103.1	147.9	134.14	116.29	68.7
Merged-chr2-23040363-3	chr2	23039841	23040841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331044)	promoter-TSS (NM_001331044)	-100.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	185.35	145.61	146.14	165.31	124.56	98.06	185.89	154.76	98.05
Merged-chr12-99480575-3	chr12	99480093	99481093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-30519.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	22.31	20.74	20.35	14.84	13.06	28.94	22.18	14.15	13.12
Merged-chr17-36023788-3	chr17	36023288	36024288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3228.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	117.27	128.56	124.87	122.12	76.51	77.97	99.28	110.54	45.59
Merged-chr5-24383639-3	chr5	24383163	24384163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001002897)	TTS (NM_001002897)	8480.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	38.33	20.74	7.4	43.86	27.52	23.31	24.29	15.48	11.24
Merged-chr10-13008396-3	chr10	13007895	13008895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175102)	promoter-TSS (NM_175102)	-55.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	85.24	96.3	62.9	94.46	96.1	87.61	108.79	102.14	55.58
Merged-chr8-25009817-3	chr8	25009310	25010310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	7112.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	61.78	85.71	56.42	89.06	59.25	89.22	122.52	109.66	68.07
Merged-chrX-151803816-2	chrX	151803303	151804303	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021523, intron 1 of 82)	CpG	521.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	212.8	213.34	150.77	213.21	226.26	175.23	207.01	227.72	163.0
Merged-chr10-81070016-3	chr10	81069520	81070520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022653)	promoter-TSS (NM_022653)	-63.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	69.79	38.25	22.2	58.7	43.85	30.54	31.69	30.95	37.47
Merged-chr14-19416164-3	chr14	19415666	19416666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	186421.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	270.58	945.53	51.8	382.56	1128.48	46.62	663.28	426.25	71.2
Merged-chr5-65698658-1	chr5	65698158	65699158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-802.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	171.62	160.81	191.47	150.46	151.15	158.35	179.55	166.7	129.28
Merged-chr13-101523789-3	chr13	101523289	101524289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-126209.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	34.9	34.1	13.87	25.64	22.39	16.88	34.85	29.18	14.36
Merged-chr8-69996537-3	chr8	69996026	69997026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145596)	promoter-TSS (NM_145596)	-142.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	247.13	196.29	179.44	214.56	162.81	131.82	201.73	168.02	140.52
Merged-chr10-78476956-3	chr10	78476470	78477470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12022.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	53.77	60.82	44.4	78.94	66.71	59.48	39.08	38.03	19.36
Merged-chr10-127121226-3	chr10	127120711	127121711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171026)	promoter-TSS (NM_001171026)	-51.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	25.17	18.89	24.05	27.66	14.0	24.92	29.57	28.74	18.74
Merged-chr17-34198383-3	chr17	34197884	34198884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010724, exon 1 of 6)	5' UTR (NM_010724, exon 1 of 6)	189.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	130.43	117.04	131.34	101.88	71.38	98.87	142.59	183.94	98.05
Merged-chr1-88008420-3	chr1	88007925	88008925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 1 of 27)	CpG	126.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	125.28	102.75	132.27	99.18	96.1	148.7	107.73	69.86	58.08
Merged-chr2-116953529-3	chr2	116953059	116954059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53407.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	19.45	17.97	8.32	16.87	12.13	12.06	12.67	16.36	4.37
Merged-chr2-25180640-3	chr2	25180128	25181128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-130.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	36.61	14.28	10.17	32.39	18.66	17.68	23.24	16.8	13.74
Merged-chr6-39418105-3	chr6	39417611	39418611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018810, intron 1 of 7)	intron (NM_018810, intron 1 of 7)	1665.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	59.49	53.91	42.55	53.98	42.92	61.89	42.25	53.5	33.1
Merged-chr2-29935392-3	chr2	29934891	29935891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028923)	promoter-TSS (NM_028923)	-18.0	NM_028923	74412.0	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	74.37	70.04	78.62	73.54	77.91	91.63	72.88	78.26	50.59
Merged-chr4-138972868-3	chr4	138972363	138973363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029857)	promoter-TSS (NM_029857)	-42.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	546.88	593.95	361.66	499.97	502.9	374.57	489.01	575.26	228.58
Merged-chr2-93823733-3	chr2	93823255	93824255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001355076	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	5.15	3.23	0.0	6.75	4.2	3.22	3.17	3.54	5.0
Merged-chr2-150909726-3	chr2	150909207	150910207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163476, exon 1 of 5)	5' UTR (NM_001163476, exon 1 of 5)	113.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	103.54	101.83	66.6	111.33	95.17	110.12	155.26	175.98	54.33
Merged-chr1-24699520-3	chr1	24699019	24700019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	20601.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	26.89	32.72	26.82	56.68	40.12	64.3	24.29	30.95	18.11
Merged-chr11-54860715-3	chr11	54860197	54861197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029327)	promoter-TSS (NM_029327)	-106.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	126.42	114.74	100.82	136.97	125.96	98.87	123.57	142.82	68.07
Merged-chr12-85474044-3	chr12	85473518	85474518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010234, exon 1 of 4)	5' UTR (NM_010234, exon 1 of 4)	128.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	385.56	261.26	153.54	411.58	268.71	225.86	279.89	286.97	114.29
Merged-chr7-38271410-3	chr7	38270860	38271860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025390)	promoter-TSS (NM_025390)	-12.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	106.97	133.63	69.37	83.66	108.7	83.59	102.45	105.24	77.44
Merged-chr17-37270955-3	chr17	37270464	37271464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013819, intron 2 of 7)	intron (NM_013819, intron 2 of 7)	730.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	426.18	505.02	268.24	366.37	373.67	247.57	414.02	519.1	216.71
Merged-chr1-131245238-3	chr1	131244734	131245734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-56.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	98.39	51.61	24.05	45.88	27.52	16.88	36.97	31.39	14.99
Merged-chr15-38470611-3	chr15	38470136	38471136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19911.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	325.5	295.82	258.99	283.38	309.3	278.91	296.79	290.5	197.98
Merged-chr6-82044685-2	chr6	82044185	82045185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3057.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	63.5	48.38	59.2	76.24	68.58	35.37	3.17	4.42	2.5
Merged-chr12-52307794-3	chr12	52307300	52308300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 10 of 10)	intron (NM_029760, intron 10 of 10)	172809.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	119.56	139.16	65.67	109.98	97.97	62.7	166.88	194.11	55.58
Merged-chr14-87415943-3	chr14	87415441	87416441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-642.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	204.8	193.07	223.84	218.61	264.98	249.17	193.28	206.93	148.01
Merged-chr13-98997228-3	chr13	98996724	98997724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12659.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	34.32	49.3	24.05	43.86	43.39	61.89	39.08	68.54	43.72
Merged-chr17-21532629-1	chr17	21532129	21533129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_131123, intron 2 of 2)	CpG	-2910.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	132.72	126.72	66.6	132.24	112.9	127.8	133.08	85.78	80.56
Merged-chr1-184614911-3	chr1	184614408	184615408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57217.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	148.73	159.89	138.74	149.79	116.16	127.0	121.46	157.85	111.79
Merged-chr7-133053033-3	chr7	133052532	133053532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	28828.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	88.67	90.77	89.72	87.04	68.58	88.42	72.88	72.52	66.2
Merged-chr2-160645841-3	chr2	160645336	160646336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009408)	promoter-TSS (NM_009408)	-61.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	205.37	210.12	183.14	199.72	189.4	137.45	158.43	187.48	114.91
Merged-chr19-23246749-3	chr19	23246260	23247260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252684, intron 8 of 24)	L2|LINE|L2	25839.0	NM_001252685	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	38.33	32.25	16.65	22.27	32.19	39.39	40.14	35.82	37.47
Merged-chr4-155086442-3	chr4	155085940	155086940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026395)	promoter-TSS (NM_026395)	-137.0	NM_001081100	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	56.06	41.01	56.42	42.51	33.59	53.05	69.71	44.66	57.46
Merged-chr1-35810738-3	chr1	35810237	35811237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257663.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	16.02	14.28	5.55	6.75	7.46	2.41	12.67	4.42	2.5
Merged-chr5-110058148-3	chr5	110057653	110058653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41816.0	NM_207279	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	35.47	52.07	43.47	37.78	34.99	53.05	59.15	53.5	42.47
Merged-chr4-117887353-3	chr4	117886840	117887840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033617)	promoter-TSS (NM_033617)	-11.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	256.28	249.75	179.44	168.0	204.8	177.64	276.72	280.33	150.51
Merged-chr6-57769263-3	chr6	57768747	57769747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	55878.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	156.74	138.24	56.42	124.82	86.77	88.42	92.94	141.49	51.84
Merged-chr1-51907897-3	chr1	51907397	51908397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	8081.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	60.64	52.99	27.75	64.1	36.39	40.99	52.81	29.63	18.74
Merged-chr4-137593901-5	chr4	137593405	137594405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347227)	promoter-TSS (NM_001347227)	-267.0	NM_001347227	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	419.32	394.43	196.09	355.58	388.6	291.78	344.32	345.33	148.64
Merged-chr3-144698149-3	chr3	144697660	144698660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	22175.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	472.52	461.71	228.46	429.12	373.21	239.53	359.1	490.36	192.98
Merged-chr14-64186048-3	chr14	64185593	64186593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81770.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	50.91	63.59	27.75	61.4	46.65	40.99	40.14	34.49	14.36
Merged-chr8-71592118-3	chr8	71591636	71592636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-48.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	158.46	147.91	142.44	166.66	153.48	155.93	167.93	168.47	106.17
Merged-chr18-11657784-3	chr18	11657297	11658297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 1 of 18)	CpG	448.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	276.87	334.99	261.76	192.29	264.04	217.02	299.96	289.18	242.94
Merged-chr5-112287317-4	chr5	112286848	112287848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	10657.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	113.27	99.07	93.42	112.68	91.44	78.77	117.24	91.09	68.7
Merged-chr6-146079435-3	chr6	146078958	146079958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	145336.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	7.44	5.99	1.85	11.47	6.06	10.45	7.39	11.5	2.5
Merged-chr14-46993398-1	chr14	46992898	46993898	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-7942.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	28.03	38.25	14.8	23.62	17.73	27.33	43.3	37.14	28.1
Merged-chr12-98265825-3	chr12	98265310	98266310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2825.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	191.07	193.07	110.99	176.78	132.95	117.35	175.33	202.51	111.17
Merged-chrX-57053681-3	chrX	57053194	57054194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029371)	promoter-TSS (NM_029371)	124.0	NM_028242	72459.0	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	115.55	106.9	126.72	117.4	97.03	108.51	99.28	83.57	56.83
Merged-chr5-120612686-1	chr5	120612186	120613186	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-97.0	NM_133908	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	298.04	254.81	150.77	292.15	226.72	161.56	275.66	250.71	121.16
Merged-chr15-53343308-3	chr15	53342745	53343745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	2938.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	76.08	88.47	43.47	96.48	59.71	50.64	70.76	57.04	37.47
Merged-chr14-55788880-3	chr14	55788403	55789403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019955)	promoter-TSS (NM_019955)	-46.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	94.96	98.61	56.42	108.63	89.1	76.36	115.12	113.64	41.84
Merged-chr18-34954754-3	chr18	34954263	34955263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-412.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	426.18	307.8	187.77	383.24	303.7	223.45	318.97	341.8	113.04
Merged-chr16-78217891-3	chr16	78217407	78218407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37547.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	195.64	205.97	131.34	230.08	206.2	206.57	352.77	407.68	176.74
Merged-chr10-13553140-3	chr10	13552651	13553651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347361)	promoter-TSS (NM_001347361)	-9.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	51.48	55.75	33.3	62.75	44.78	66.71	80.27	74.73	26.23
Merged-chr15-8099254-3	chr15	8098751	8099751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081402)	promoter-TSS (NM_001081402)	-42.0	NM_001081402	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	120.7	144.69	68.45	125.5	118.03	94.85	113.01	107.45	95.55
Merged-chr2-167802784-3	chr2	167802270	167803270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111593.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	190.49	128.1	109.14	225.36	116.16	127.0	192.23	220.2	83.69
Merged-chr3-35754011-3	chr3	35753526	35754526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029570)	promoter-TSS (NM_029570)	-37.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	58.92	38.25	48.1	62.07	31.72	38.58	60.2	39.8	28.73
Merged-chr15-77800711-3	chr15	77800204	77801204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	41471.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	73.22	85.71	77.7	79.62	88.64	75.56	115.12	95.51	81.81
Merged-chr11-51817966-3	chr11	51817469	51818469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39512.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	75.51	57.6	65.67	72.87	47.12	48.23	79.21	60.13	45.59
Merged-chr12-86947299-3	chr12	86946800	86947800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289432)	promoter-TSS (NM_001289432)	-43.0	NM_173735	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	220.81	188.0	115.62	236.15	226.26	188.89	198.56	177.31	111.79
Merged-chr3-95668173-3	chr3	95667684	95668684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9463.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	270.58	209.2	208.11	316.44	212.26	223.45	239.75	279.45	179.24
Merged-chr7-118699036-3	chr7	118698512	118699512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	6726.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	6.86	8.75	9.25	16.19	15.39	17.68	31.69	16.8	11.24
Merged-chr19-6061237-3	chr19	6060747	6061747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013859)	promoter-TSS (NM_013859)	40.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	144.73	135.93	112.84	131.57	99.37	118.96	83.44	77.82	71.2
Merged-chr16-23272334-3	chr16	23271804	23272804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18166.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	216.81	186.62	115.62	200.39	122.23	161.56	130.97	153.87	108.04
Merged-chr7-90426452-3	chr7	90425951	90426951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027298, exon 1 of 1)	5' UTR (NM_027298, exon 1 of 1)	139.0	NM_027298	70054.0	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	22.31	9.22	20.35	16.87	8.4	9.65	6.34	15.92	14.99
Merged-chr10-67271848-3	chr10	67271361	67272361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036293, intron 2 of 3)	intron (NM_001036293, intron 2 of 3)	13420.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	87.52	80.18	67.52	105.26	104.03	73.95	65.48	75.61	31.23
Merged-chr14-59341402-3	chr14	59340890	59341890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164327)	promoter-TSS (NM_001164327)	-60.0	NM_001164327	236451.0	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	128.14	110.13	53.65	124.15	111.5	60.28	145.75	141.05	74.32
Merged-chr7-34168497-3	chr7	34167951	34168951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016682)	promoter-TSS (NM_016682)	78.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	99.54	123.49	130.42	95.81	107.3	111.73	129.91	87.99	72.45
Merged-chr19-44389780-1	chr19	44389280	44390280	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17929.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	68.07	35.94	21.27	80.97	33.59	43.4	122.52	62.79	22.48
Merged-chr5-65108356-3	chr5	65107869	65108869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	intron (NM_001347355, intron 1 of 10)	801.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	198.5	193.07	158.17	170.7	145.08	174.42	210.18	182.17	123.03
Merged-chr3-89393789-3	chr3	89393295	89394295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040404)	promoter-TSS (NR_040404)	-417.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	135.0	136.39	130.42	89.06	81.64	86.81	139.42	174.21	100.55
Merged-chrX-108834455-3	chrX	108833946	108834946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015493)	promoter-TSS (NR_015493)	-32.0	NR_015493	69964.0	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	63.5	66.35	41.62	64.77	57.38	36.97	42.25	52.62	46.84
Merged-chr8-77435198-3	chr8	77434712	77435712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-81844.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	21.74	17.97	18.5	26.99	8.4	9.65	11.62	6.63	3.75
Merged-chr9-65885095-3	chr9	65884590	65885590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170907)	promoter-TSS (NM_001170907)	83.0	NM_001170907	56404.0	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	78.37	86.63	53.65	86.36	69.04	123.78	77.1	110.1	73.69
Merged-chr4-149710712-3	chr4	149710208	149711208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	22.31	14.75	14.8	29.69	8.86	23.31	28.52	30.95	18.74
Merged-chr2-26237449-3	chr2	26236887	26237887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	12.0	NM_153559	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	36.61	29.03	29.6	37.11	36.39	30.54	31.69	26.97	26.85
Merged-chr13-20187861-3	chr13	20187352	20188352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	97345.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	40.04	29.03	24.05	37.78	24.72	23.31	24.29	16.36	16.86
Merged-chr7-28386178-3	chr7	28385667	28386667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6523.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	390.14	306.88	185.92	353.55	222.52	198.54	332.7	347.99	191.73
Merged-chr9-61965705-3	chr9	61965170	61966170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-18871.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	57.21	49.76	74.92	87.71	60.65	86.81	69.71	67.65	49.34
Merged-chrX-109191596-3	chrX	109191090	109192090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5166.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	111.55	119.34	77.7	110.65	109.63	105.3	102.45	122.48	45.59
Merged-chr12-3221285-3	chr12	3220788	3221788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-14503.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	28.03	29.03	27.75	24.96	13.53	28.94	41.19	32.28	15.61
Merged-chr6-72616799-3	chr6	72616295	72617295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009444)	promoter-TSS (NM_009444)	-47.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	205.94	207.35	116.54	204.44	211.79	163.17	234.47	229.93	111.79
Merged-chr17-83267698-3	chr17	83267179	83268179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52396.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	42.33	28.57	32.37	74.22	59.71	83.59	47.53	53.06	16.86
Merged-chr3-90433621-3	chr3	90433154	90434154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145540)	promoter-TSS (NM_145540)	-18.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	148.73	152.52	161.87	161.93	144.15	142.27	135.19	172.0	114.29
Merged-chr4-40143369-3	chr4	40142869	40143869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007386, exon 1 of 21)	5' UTR (NM_007386, exon 1 of 21)	104.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	199.07	223.02	225.69	217.93	241.18	218.63	232.36	223.74	143.64
Merged-chr1-106815523-3	chr1	106815071	106816071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18846.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	88.67	99.53	71.22	97.16	73.71	78.77	55.98	41.56	38.72
Merged-chr10-93589626-3	chr10	93589121	93590121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027246)	promoter-TSS (NM_027246)	37.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	45.19	35.48	23.12	47.23	43.39	26.53	122.52	63.23	37.47
Merged-chr9-35305451-3	chr9	35304951	35305951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	24346.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	632.12	2858.71	703.89	901.42	3217.04	669.56	1530.41	1378.24	737.57
Merged-chr12-86819362-3	chr12	86818865	86819865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65449.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	21.17	9.22	5.55	12.14	5.6	3.22	12.67	2.65	3.75
Merged-chr17-10982342-3	chr17	10981845	10982845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	141986.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	5.15	8.75	9.25	9.45	6.53	4.82	6.34	1.77	1.25
Merged-chr3-51183725-3	chr3	51183224	51184224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40723.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	32.04	42.39	16.65	61.4	50.38	43.4	85.55	97.72	93.68
Merged-chr1-13012819-1	chr1	13012319	13013319	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21684.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	2.29	3.69	2.77	2.7	0.93	0.0	5.28	2.65	3.75
Merged-chr8-70594297-3	chr8	70593809	70594809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023627)	promoter-TSS (NM_023627)	-172.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	79.52	41.47	60.12	85.69	47.58	61.09	66.54	50.85	34.35
Merged-chr10-96015953-3	chr10	96015443	96016443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 13 of 28)	intron (NM_001001932, intron 13 of 28)	75280.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	38.33	26.73	4.62	57.35	23.79	17.68	31.69	24.76	5.62
Merged-chr17-65772693-3	chr17	65772192	65773192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133685)	promoter-TSS (NM_133685)	60.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	131.0	105.52	89.72	177.45	113.36	103.69	178.5	141.05	99.92
Merged-chrX-169320468-3	chrX	169319980	169320980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331049)	promoter-TSS (NM_001331049)	85.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	174.48	160.35	103.59	177.45	161.88	104.49	128.85	139.28	49.34
Merged-chr1-13589423-3	chr1	13588917	13589917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028173, intron 1 of 10)	CpG	493.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	304.9	274.63	217.36	317.12	197.33	201.75	277.78	208.7	172.99
Merged-chr10-78465072-3	chr10	78464588	78465588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-140.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	461.08	445.12	340.38	492.54	485.64	346.43	449.93	498.32	239.82
Merged-chr1-128722237-3	chr1	128721775	128722775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129976.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	129.86	98.15	71.22	134.27	80.71	90.02	78.16	79.59	54.33
Merged-chr13-3537971-3	chr13	3537484	3538484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-91.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	149.88	132.25	140.59	124.15	102.17	122.18	137.3	122.92	123.03
Merged-chr4-43560516-3	chr4	43560015	43561015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2068.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	208.23	153.44	197.94	187.57	89.57	126.19	209.12	206.93	114.29
Merged-chr7-4792861-3	chr7	4792339	4793339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009081)	promoter-TSS (NM_009081)	-126.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	153.88	208.27	185.92	180.82	182.87	169.6	164.76	179.52	151.14
Merged-chr12-31499746-5	chr12	31499223	31500223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134048)	promoter-TSS (NM_134048)	-107.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	138.44	194.45	139.67	139.67	208.53	191.3	170.05	158.74	104.3
Merged-chr14-77343927-3	chr14	77343416	77344416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	162952.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	122.42	165.88	101.74	136.97	112.9	112.53	84.49	72.07	52.46
Merged-chr11-53774816-3	chr11	53774311	53775311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 7 of 9)	intron (NM_001159393, intron 7 of 9)	4338.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	40.04	45.16	61.97	26.99	28.46	23.31	67.6	41.12	35.6
Merged-chr14-121372023-3	chr14	121371509	121372509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	7221.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	19.45	27.65	23.12	37.78	25.66	37.78	14.79	15.03	26.85
Merged-chr5-140379395-3	chr5	140378891	140379891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	9917.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	61.21	98.61	121.17	62.07	42.92	72.34	54.92	51.29	54.33
Merged-chr11-101979581-3	chr11	101979071	101980071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 2 of 2)	intron (NM_028207, intron 2 of 2)	5220.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	66.93	49.3	39.77	56.68	51.32	46.62	63.37	64.56	38.1
Merged-chr6-38434863-3	chr6	38434364	38435364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177185, intron 1 of 16)	CpG	939.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	90.96	69.12	86.95	96.48	63.45	70.73	83.44	80.03	58.71
Merged-chr17-6782763-3	chr17	6782259	6783259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009510)	promoter-TSS (NM_009510)	21.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	323.21	390.74	193.32	368.4	413.79	280.52	291.51	335.16	174.24
Merged-chr7-19002950-3	chr7	19002457	19003457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1108.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	81.8	102.75	74.92	50.6	67.64	68.32	117.24	105.24	78.07
Merged-chr11-106716796-3	chr11	106716299	106717299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1518.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	42.33	41.47	12.95	49.25	23.79	40.19	35.91	25.2	28.73
Merged-chr4-151044812-3	chr4	151044317	151045317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289878)	promoter-TSS (NM_001289878)	-152.0	NM_001289878	18628.0	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	185.92	208.27	130.42	149.11	142.75	142.27	179.55	153.87	102.42
Merged-chr18-79622470-3	chr18	79621966	79622966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-424429.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	8.58	11.98	16.65	12.82	9.8	17.68	12.67	16.36	15.61
Merged-chr4-45012528-3	chr4	45012034	45013034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-122.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	292.89	281.54	191.47	215.23	213.19	148.7	185.89	236.12	169.25
Merged-chr3-127787321-3	chr3	127786873	127787873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-2499.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	82.95	54.37	44.4	69.5	43.39	61.09	54.92	37.14	53.08
Merged-chr12-33578113-1	chr12	33577613	33578613	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148489.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	2.86	5.07	5.55	4.05	16.33	1.61	9.51	8.4	11.24
Merged-chr6-38346016-3	chr6	38345492	38346492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	8611.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	42.9	43.77	37.0	25.64	24.26	24.92	51.75	48.64	16.24
Merged-chr2-152105506-3	chr2	152105008	152106008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-16.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	431.33	394.43	244.19	414.28	346.15	295.79	414.02	337.82	201.72
Merged-chr1-182489926-3	chr1	182489418	182490418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 6 of 20)	intron (NM_009794, intron 6 of 20)	27692.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	21.17	21.66	34.22	14.17	13.53	21.7	17.96	16.36	2.5
Merged-chr9-27030689-3	chr9	27030199	27031199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	524.0	NM_178113	78658.0	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	70.36	115.66	111.92	85.69	104.96	97.26	103.51	119.39	84.31
Merged-chr10-84441274-3	chr10	84440765	84441765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004363)	promoter-TSS (NM_001004363)	-794.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	191.07	217.03	173.89	176.1	200.13	173.62	203.84	188.81	121.78
Merged-chr1-171827871-3	chr1	171827362	171828362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-11835.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	89.81	60.36	44.4	77.59	37.79	35.37	70.76	57.04	28.73
Merged-chr13-22028868-3	chr13	22028374	22029374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6769.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	42.9	57.6	36.07	34.41	31.72	17.68	22.18	37.14	13.74
Merged-chr2-112448271-3	chr2	112447776	112448776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-6749.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	33.18	23.5	13.87	34.41	25.66	40.19	22.18	22.11	26.23
Merged-chr2-29965452-3	chr2	29964937	29965937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309460)	promoter-TSS (NM_001309460)	-123.0	NM_001177668	20740.0	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	173.33	136.85	131.34	124.82	114.29	132.63	143.64	164.49	78.69
Merged-chrX-75095946-3	chrX	75095443	75096443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001030307)	promoter-TSS (NM_001030307)	89.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	66.36	73.73	54.57	77.59	69.51	54.66	74.99	102.58	30.6
Merged-chr16-36875013-3	chr16	36874474	36875474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134111)	promoter-TSS (NM_134111)	-148.0	NM_134111	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	355.82	397.2	269.16	333.31	301.83	218.63	303.13	289.62	146.76
Merged-chr6-72025666-3	chr6	72025169	72026169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	16859.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	22.88	22.58	16.65	19.57	12.6	39.39	21.12	18.13	18.74
Merged-chr10-79780254-3	chr10	79779753	79780753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031380, intron 3 of 4)	intron (NM_031380, intron 3 of 4)	2979.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	24.6	7.83	21.27	27.66	9.33	22.51	27.46	11.5	17.49
Merged-chr5-137533645-3	chr5	137533159	137534159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010312)	promoter-TSS (NM_010312)	-353.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	109.26	93.08	75.85	77.59	60.18	81.18	101.39	124.25	76.19
Merged-chr8-69037931-3	chr8	69037413	69038413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50823.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	10.87	16.59	5.55	33.06	34.52	45.01	29.57	41.12	28.1
Merged-chr11-114927705-3	chr11	114927186	114928186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	6700.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	163.61	126.72	133.19	206.46	103.1	183.26	167.93	173.33	121.16
Merged-chr11-34058378-3	chr11	34057879	34058879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	MTD|LTR|ERVL-MaLR	11451.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	96.11	97.69	45.32	82.99	55.05	67.52	74.99	84.9	57.46
Merged-chr11-3157016-2	chr11	3156502	3157502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	32981.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	169.33	321.17	210.89	346.8	397.0	504.78	8.45	7.07	357.85
Merged-chr11-32554205-3	chr11	32553708	32554708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	URR1B|DNA|hAT-Charlie	20942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	225.96	205.05	131.34	224.01	162.81	168.8	238.7	248.5	104.3
Merged-chr5-113621233-3	chr5	113620712	113621712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	L4_B_Mam|LINE|RTE-X	22391.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	19.45	17.51	3.7	26.99	16.33	26.53	33.8	13.71	18.11
Merged-chr12-82470254-3	chr12	82469764	82470764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146661.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	28.03	21.66	12.95	21.59	16.79	12.06	24.29	17.24	5.62
Merged-chr9-120933389-3	chr9	120932888	120933888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165902)	promoter-TSS (NM_001165902)	-12.0	NM_007614	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	77.8	38.71	58.27	67.47	22.86	44.21	70.76	19.46	33.72
Merged-chr1-46921762-3	chr1	46921262	46922262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	4014.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	20.02	32.25	24.05	29.69	20.99	18.49	14.79	11.05	18.74
Merged-chr7-100508838-3	chr7	100508344	100509344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 3 of 7)	URR1B|DNA|hAT-Charlie	5971.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	113.84	82.94	46.25	128.87	69.98	56.27	170.05	187.48	90.56
Merged-chr15-73733232-3	chr15	73732733	73733733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	8303.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	92.67	127.18	90.65	120.77	83.04	124.59	139.42	116.29	74.94
Merged-chr1-88510054-2	chr1	88509548	88510548	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008132)	promoter-TSS (NM_008132)	18.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	3.43	4.15	3.7	38.46	53.65	23.31	61.26	76.05	41.84
Merged-chr12-3806486-3	chr12	3806030	3807030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271753)	promoter-TSS (NM_001271753)	-450.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	41.76	24.88	56.42	46.56	23.79	49.83	78.16	42.45	40.59
Merged-chr17-47216030-3	chr17	47215543	47216543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	MIR3|SINE|MIR	-14187.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	77.8	68.66	40.7	40.48	26.59	49.83	55.98	50.85	46.22
Merged-chr19-12833318-3	chr19	12832814	12833814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361971, exon 9 of 9)	exon (NM_001361971, exon 9 of 9)	-28463.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	81.8	120.26	61.05	121.45	129.69	110.12	73.93	110.98	69.95
Merged-chr7-63914270-3	chr7	63913785	63914785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-2572.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	137.86	119.8	98.97	101.21	81.64	90.02	87.66	126.9	98.68
Merged-chr5-24750859-3	chr5	24750358	24751358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153076)	TTS (NM_153076)	6985.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	17.16	18.89	23.12	58.7	51.78	70.73	79.21	57.92	34.97
Merged-chr2-62646202-3	chr2	62645712	62646712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	43.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	322.07	292.14	175.74	282.71	278.04	183.26	273.55	334.72	155.51
Merged-chr17-50490864-3	chr17	50490370	50491370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18677.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	80.66	45.16	24.05	74.22	51.32	55.46	80.27	58.37	39.35
Merged-chr2-131436333-3	chr2	131435854	131436854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-55508.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	70.36	29.49	56.42	75.57	40.59	48.23	95.06	53.06	38.72
Merged-chr10-37337498-3	chr10	37337010	37338010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198584.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	260.86	335.45	157.24	217.93	265.91	238.73	216.52	284.31	171.12
Merged-chr9-111553426-1	chr9	111552926	111553926	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114345.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	9.15	9.22	3.7	11.47	10.26	19.29	31.69	19.01	11.87
Merged-chr9-50462550-3	chr9	50462045	50463045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31980.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	56.06	64.05	61.05	39.13	40.12	45.82	68.65	60.13	59.95
Merged-chr5-85915185-3	chr5	85914672	85915672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150411.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	11.44	14.75	13.87	26.31	28.46	22.51	20.07	19.01	18.11
Merged-chr12-75596361-3	chr12	75595876	75596876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012024)	promoter-TSS (NM_012024)	-176.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	92.67	100.45	129.49	103.91	118.49	116.55	127.8	101.26	68.7
Merged-chr19-42045437-3	chr19	42044926	42045926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026152)	promoter-TSS (NM_026152)	-425.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	20.59	13.36	30.52	14.84	20.53	19.29	16.9	12.38	9.37
Merged-chr5-117978097-3	chr5	117977592	117978592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346588, intron 2 of 11)	intron (NM_001346588, intron 2 of 11)	1322.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	25.74	11.06	22.2	26.99	11.2	34.56	24.29	15.03	17.49
Merged-chr15-25407384-3	chr15	25406858	25407858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	6406.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	24.6	21.66	16.65	18.89	14.93	5.63	31.69	22.11	11.87
Merged-chr1-173978961-1	chr1	173978461	173979461	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	Lx3_Mus|LINE|L1	3883.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	10.3	10.6	17.57	105.26	62.98	76.36	1.06	3.54	8.74
Merged-chr2-159587288-3	chr2	159586787	159587787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-360054.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	49.77	63.59	62.9	59.38	27.06	24.11	31.69	34.93	46.84
Merged-chr16-92697399-3	chr16	92696907	92697907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-78.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	142.44	115.66	98.05	115.38	98.9	97.26	100.34	120.27	62.45
Merged-chr13-93192400-3	chr13	93191910	93192910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133905)	promoter-TSS (NM_133905)	7.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	268.87	306.88	226.61	242.9	284.1	262.04	279.89	264.42	191.11
Merged-chr5-22917383-2	chr5	22916889	22917889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-170505.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	10.87	21.2	14.8	2.02	0.93	0.0	11.62	15.03	8.74
Merged-chr16-32113747-3	chr16	32113265	32114265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13963.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	104.69	104.14	67.52	112.0	76.04	115.75	70.76	91.53	61.2
Merged-chr9-47642858-3	chr9	47642359	47643359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	112507.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	117.27	94.0	66.6	151.81	60.18	82.79	109.84	96.83	54.96
Merged-chr13-91702519-3	chr13	91702021	91703021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015501, exon 2 of 2)	non-coding (NR_015501, exon 2 of 2)	-39000.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	33.18	20.27	13.87	23.62	18.19	30.54	7.39	21.22	8.12
Merged-chr12-102469563-3	chr12	102469062	102470062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-348.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	349.52	282.92	215.51	356.25	282.7	225.06	274.61	245.4	126.78
Merged-chr10-42860275-3	chr10	42859759	42860759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172938)	promoter-TSS (NM_172938)	-253.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	20.02	15.67	5.55	16.87	12.13	3.22	22.18	11.5	9.99
Merged-chr4-111719947-3	chr4	111719441	111720441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026470)	promoter-TSS (NM_026470)	-69.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	80.66	84.78	97.12	106.61	62.98	141.47	94.0	95.07	110.54
Merged-chr10-41450383-3	chr10	41449894	41450894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153398)	promoter-TSS (NM_153398)	36.0	NR_102360	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	170.47	197.22	120.24	160.58	179.61	143.07	209.12	167.14	101.8
Merged-chr9-35199943-3	chr9	35199441	35200441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177847)	promoter-TSS (NM_001177847)	24.0	NM_001177846	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	81.8	104.6	101.74	85.01	95.63	112.53	86.61	110.54	57.46
Merged-chr11-119390466-3	chr11	119389951	119390951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035453)	promoter-TSS (NR_035453)	-21.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	426.75	380.61	352.41	472.98	431.99	386.62	378.11	425.81	239.82
Merged-chr17-50470090-3	chr17	50469582	50470582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39465.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	225.39	293.52	190.54	186.22	223.92	155.93	210.18	315.71	143.64
Merged-chr19-11989525-3	chr19	11989019	11990019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033174, intron 11 of 13)	intron (NM_001033174, intron 11 of 13)	23675.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	25.17	14.75	18.5	42.51	19.59	20.09	21.12	11.94	16.86
Merged-chr6-72140600-3	chr6	72140095	72141095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-17398.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	301.47	294.44	215.51	339.38	248.18	192.91	358.05	463.39	165.5
Merged-chr2-25196830-3	chr2	25196337	25197337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146115)	promoter-TSS (NM_146115)	-24.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	130.43	176.94	177.59	131.57	88.17	179.24	171.1	239.65	146.14
Merged-chr10-82623198-3	chr10	82622651	82623651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135567)	promoter-TSS (NM_001135567)	77.0	NM_001135569	544717.0	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	78.37	69.58	45.32	118.08	109.16	67.52	209.12	193.67	60.58
Merged-chr16-10480006-3	chr16	10479491	10480491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302619)	promoter-TSS (NM_001302619)	-81.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	26.89	40.55	48.1	23.62	22.39	26.53	33.8	34.49	20.61
Merged-chr15-57695585-3	chr15	57695158	57696158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	CpG	991.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	292.32	261.26	177.59	358.95	330.29	212.2	239.75	157.41	109.92
Merged-chr9-111579736-3	chr9	111579241	111580241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 8 of 10)	B4|SINE|B4	110607.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.57	5.07	5.55	6.75	6.53	2.41	9.51	6.19	0.62
Merged-chr17-26244301-3	chr17	26243817	26244817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-75.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	319.21	277.85	151.69	282.71	173.54	167.19	247.15	297.14	133.65
Merged-chr15-98918256-3	chr15	98917759	98918759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029098)	promoter-TSS (NM_029098)	-161.0	NM_029098	74775.0	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	151.02	138.7	128.57	176.78	122.69	127.0	153.15	168.47	99.92
Merged-chr16-22857692-3	chr16	22857215	22858215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026400)	promoter-TSS (NM_026400)	-46.0	NM_001316746	70573.0	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	256.28	349.74	203.49	258.42	259.85	218.63	261.93	268.4	146.76
Merged-chr11-48813845-3	chr11	48813357	48814357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 1 of 5)	MIRb|SINE|MIR	3534.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	39.47	39.17	39.77	53.3	45.25	45.82	49.64	57.48	31.85
Merged-chr16-38902310-3	chr16	38901814	38902814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170599)	promoter-TSS (NM_170599)	-31.0	NM_170599	207683.0	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	8.01	0.92	0.92	8.1	3.27	1.61	6.34	0.88	2.5
Merged-chr14-65358472-3	chr14	65357964	65358964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	-212.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	62.35	40.09	34.22	51.28	36.39	42.6	73.93	34.05	37.47
Merged-chr11-19020547-3	chr11	19020050	19021050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1581.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	27.46	23.5	9.25	19.57	20.53	15.27	38.02	27.86	21.86
Merged-chr15-99457865-3	chr15	99457382	99458382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001884)	promoter-TSS (NM_001001884)	-134.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	34.9	34.56	36.07	48.58	39.19	56.27	40.14	46.43	43.72
Merged-chrX-9474565-3	chrX	9474069	9475069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5245.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	79.52	124.87	35.15	87.04	72.78	55.46	67.6	80.47	40.59
Merged-chr7-100495913-3	chr7	100495430	100496430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	2572.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	224.82	170.03	86.95	261.79	190.34	113.33	116.18	155.2	106.79
Merged-chr12-85602941-3	chr12	85602446	85603446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	MIR|SINE|MIR	2928.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	106.97	71.88	54.57	110.65	77.91	67.52	106.67	92.41	61.83
Merged-chr1-191193775-3	chr1	191193261	191194261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	132.72	81.1	22.2	128.87	78.37	48.23	99.28	106.12	52.46
Merged-chr9-70260462-3	chr9	70259955	70260955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	53105.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	50.91	44.24	18.5	58.03	50.85	40.99	20.07	21.67	9.99
Merged-chr2-52742266-4	chr2	52741760	52742760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019667)	promoter-TSS (NM_019667)	-111.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	208.8	203.21	174.82	208.49	222.06	192.11	282.0	200.3	109.92
Merged-chr2-160210051-3	chr2	160209563	160210563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117431.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	85.24	87.09	61.05	138.32	125.49	126.19	111.96	104.35	61.2
Merged-chr2-128364362-3	chr2	128363863	128364863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	64988.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	61.78	36.86	40.7	91.76	43.85	30.54	52.81	56.6	23.11
Merged-chr13-35941461-1	chr13	35940961	35941961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-26445.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	26.31	28.57	36.07	19.57	14.93	12.06	11.62	13.27	3.75
Merged-chr1-91038180-3	chr1	91037677	91038677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-15267.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	29.17	23.04	15.72	24.96	17.73	8.04	21.12	18.13	5.0
Merged-chr7-34230322-3	chr7	34229800	34230800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008155)	promoter-TSS (NM_008155)	36.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	53.2	50.69	49.02	64.1	71.38	75.56	73.93	68.98	38.1
Merged-chr6-83681762-3	chr6	83681281	83682281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3924.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	10.3	16.13	18.5	15.52	14.93	21.7	12.67	17.69	17.49
Merged-chr5-105624389-3	chr5	105623907	105624907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75562.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	68.65	36.4	30.52	39.81	13.06	24.92	35.91	32.72	19.98
Merged-chr11-50236763-3	chr11	50236265	50237265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132732, intron 4 of 4)	CpG	1767.0	NM_001313968	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	41.76	22.58	16.65	59.38	37.79	57.87	41.19	35.37	38.1
Merged-chr8-108723371-3	chr8	108722874	108723874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8730.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	55.49	53.45	50.87	77.59	55.05	52.25	46.47	40.68	28.73
Merged-chr16-44140647-3	chr16	44140117	44141117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	intron (NM_028108, intron 1 of 4)	808.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	385.56	417.93	342.23	363.0	389.07	303.03	318.97	430.67	242.94
Merged-chr1-13648060-3	chr1	13647553	13648553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	12456.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	29.17	29.95	28.67	29.69	24.26	32.15	16.9	13.27	16.24
Merged-chr15-83350185-3	chr15	83349685	83350685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025445)	promoter-TSS (NM_025445)	62.0	NM_001357756	66251.0	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	117.27	125.79	92.5	133.59	108.7	86.01	122.52	86.22	54.96
Merged-chr9-14276181-3	chr9	14275667	14276667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030261)	promoter-TSS (NM_030261)	-134.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	81.23	72.8	24.97	75.57	71.84	54.66	72.88	57.92	35.6
Merged-chr6-108782028-3	chr6	108781516	108782516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1043.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	90.96	89.39	41.62	80.29	70.91	98.06	83.44	96.83	52.46
Merged-chr7-46615800-3	chr7	46615327	46616327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 7 of 10)	MIR3|SINE|MIR	23980.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	58.92	43.77	25.9	52.63	40.12	33.76	43.3	35.37	21.86
Merged-chr8-57652302-3	chr8	57651864	57652864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040698, intron 1 of 3)	CpG	611.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	156.74	133.17	147.07	162.61	102.63	84.4	183.78	99.49	74.32
Merged-chr2-158597000-3	chr2	158596504	158597504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040359, intron 2 of 2)	intron (NR_040359, intron 2 of 2)	13719.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	4.0	2.3	0.0	3.37	1.87	3.22	4.22	1.33	0.62
Merged-chr1-39922884-3	chr1	39922384	39923384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	21971.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	27.46	35.94	28.67	27.66	18.66	53.05	46.47	39.8	35.6
Merged-chr17-29397058-3	chr17	29396560	29397560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36146.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	92.67	76.03	61.05	53.3	31.72	43.4	86.61	77.38	81.19
Merged-chr11-107317923-3	chr11	107317434	107318434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	intron (NR_153311, intron 4 of 9)	-128553.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	391.86	286.61	182.22	340.06	264.51	144.68	351.71	438.63	143.02
Merged-chr3-13721371-1	chr3	13720871	13721871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	-68506.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	5.72	3.69	5.55	6.07	9.33	5.63	3.17	3.54	6.25
Merged-chr15-76477355-3	chr15	76476862	76477862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331154)	promoter-TSS (NM_001331154)	0.0	NM_001331153	15499.0	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	79.52	57.6	43.47	57.35	68.11	53.85	54.92	49.08	49.34
Merged-chr2-143991170-1	chr2	143990670	143991670	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	20093.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	34.32	43.31	44.4	43.18	26.12	30.54	40.14	40.24	40.59
Merged-chr1-184735269-3	chr1	184734768	184735768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2775.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	90.38	65.89	55.5	83.66	60.65	88.42	88.72	57.92	51.84
Merged-chr19-40994238-3	chr19	40993750	40994750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008528, exon 1 of 17)	5' UTR (NM_008528, exon 1 of 17)	285.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	98.97	76.95	59.2	93.79	133.42	81.99	82.38	102.14	18.74
Merged-chr3-129948596-3	chr3	129948095	129949095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	21611.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	10.87	6.91	21.27	14.84	13.53	24.92	4.22	9.73	14.99
Merged-chr5-105662078-3	chr5	105661560	105662560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37909.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	134.43	109.21	83.25	148.44	110.1	112.53	13.73	10.61	14.99
Merged-chr7-31148909-3	chr7	31148405	31149405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	(CAGC)n|Simple_repeat|Simple_repeat	2266.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	23.45	12.9	23.12	31.71	22.86	16.08	25.35	10.17	15.61
Merged-chr4-59440155-3	chr4	59439645	59440645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1512.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	115.55	95.38	74.0	95.81	68.58	116.55	76.05	68.98	74.32
Merged-chr11-76587537-3	chr11	76587039	76588039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9800.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	270.01	275.55	234.94	280.01	257.05	233.9	235.53	320.57	158.01
Merged-chr4-155235130-3	chr4	155234609	155235609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12574.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	182.49	183.85	114.69	147.76	136.22	150.31	143.64	155.2	123.66
Merged-chr6-97814402-3	chr6	97813903	97814903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	7345.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	84.09	111.05	45.32	83.66	52.72	66.71	92.94	110.54	91.18
Merged-chr8-91082157-3	chr8	91081688	91082688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12131.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	38.9	37.32	27.75	63.42	59.71	87.61	31.69	19.9	28.1
Merged-chr15-58141384-3	chr15	58140900	58141900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326599)	promoter-TSS (NM_001326599)	34.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	121.28	114.27	109.14	144.39	159.55	139.86	127.8	103.02	71.82
Merged-chr2-59427420-3	chr2	59426931	59427931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40749.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	13.16	19.35	12.95	20.92	19.59	44.21	11.62	13.71	9.99
Merged-chr12-26415283-3	chr12	26414797	26415797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081977)	promoter-TSS (NM_001081977)	-35.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	14.87	11.98	6.47	22.94	14.0	12.06	10.56	0.88	0.0
Merged-chr14-20181792-1	chr14	20181292	20182292	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021542)	promoter-TSS (NM_021542)	-10.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	2.86	1.38	1.85	2.7	4.67	3.22	1.06	1.33	1.87
Merged-chr13-17993337-3	chr13	17992839	17993839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025904)	promoter-TSS (NM_025904)	12.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	74.37	83.4	99.89	94.46	130.62	133.43	108.79	124.69	86.18
Merged-chr15-81514397-3	chr15	81513909	81514909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48093.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	43.48	27.65	25.9	25.64	16.33	38.58	49.64	39.35	26.23
Merged-chrX-36808017-3	chrX	36807516	36808516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9184.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	38.9	41.47	43.47	24.96	24.72	34.56	43.3	42.89	28.73
Merged-chr11-115119645-3	chr11	115119161	115120161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169153, intron 4 of 6)	intron (NM_001169153, intron 4 of 6)	14331.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	52.63	64.05	45.32	22.94	16.79	17.68	24.29	22.55	9.37
Merged-chr18-60848986-3	chr18	60848473	60849473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198984)	promoter-TSS (NM_001198984)	-9.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	94.39	82.02	87.87	92.44	109.63	60.28	74.99	97.28	43.09
Merged-chr4-45409537-3	chr4	45409039	45410039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-773.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	169.9	219.79	135.04	165.31	236.52	200.14	280.95	369.65	163.0
Merged-chrX-155213650-1	chrX	155213150	155214150	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291865, exon 7 of 7)	exon (NM_001291865, exon 7 of 7)	2799.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	49.77	89.39	30.52	60.72	94.7	36.97	117.24	141.05	40.59
Merged-chr6-120452572-3	chr6	120452070	120453070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10627.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	23.45	17.05	20.35	37.11	20.06	39.39	43.3	30.51	23.11
Merged-chr17-43558033-3	chr17	43557520	43558520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10431.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	221.96	252.51	146.14	221.31	216.46	242.74	203.84	227.72	119.28
Merged-chr11-74994306-3	chr11	74993811	74994811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	68439.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	133.86	137.31	64.75	130.22	83.04	86.01	104.56	153.87	54.96
Merged-chr12-86888756-4	chr12	86888244	86889244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3930.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	164.75	188.92	154.47	157.88	118.49	185.68	211.24	316.15	131.78
Merged-chr4-123412085-4	chr4	123411608	123412608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167918)	promoter-TSS (NM_001167918)	-197.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	26.31	16.59	23.12	26.31	12.6	8.04	47.53	19.46	22.48
Merged-chr6-100100870-3	chr6	100100357	100101357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	186501.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	6.86	9.68	0.0	10.12	7.0	11.25	5.28	2.65	3.75
Merged-chr17-47226018-1	chr17	47225518	47226518	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-4212.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	95.53	90.77	86.95	116.05	92.84	106.1	83.44	87.99	63.7
Merged-chr6-123266046-3	chr6	123265540	123266540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163161, intron 2 of 5)	L1ME3A|LINE|L1	3933.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	62.93	46.54	14.8	94.46	110.56	44.21	45.42	59.69	32.48
Merged-chr7-45299945-3	chr7	45299423	45300423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17050.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	6.86	10.14	7.4	10.8	3.27	4.02	5.28	3.1	8.12
Merged-chr13-110357187-3	chr13	110356684	110357684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177713)	promoter-TSS (NM_177713)	-12.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	10.87	9.68	5.55	13.49	5.13	25.72	9.51	4.42	10.62
Merged-chr12-32823580-3	chr12	32823080	32824080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045032)	promoter-TSS (NR_045032)	-536.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	144.73	141.0	110.07	138.32	124.09	105.3	144.7	173.33	80.56
Merged-chr13-45391719-3	chr13	45391244	45392244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2002.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	259.71	227.17	101.74	230.75	192.2	150.31	256.65	270.61	141.14
Merged-chr5-110810189-3	chr5	110809705	110810705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009469)	promoter-TSS (NM_009469)	-124.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	157.31	87.55	133.19	137.64	69.51	97.26	139.42	60.58	59.33
Merged-chr5-125358413-3	chr5	125357883	125358883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17289.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	78.37	59.9	61.97	68.82	40.12	59.48	77.1	67.65	66.82
Merged-chr6-137754575-3	chr6	137754087	137755087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172733)	promoter-TSS (NM_172733)	10.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	55.49	52.53	38.85	56.68	61.58	49.83	63.37	52.62	36.22
Merged-chr18-67391353-3	chr18	67390811	67391811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 1 of 3)	CpG	580.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	318.06	267.25	148.92	284.73	255.65	187.28	185.89	164.93	109.29
Merged-chr5-72184148-3	chr5	72183645	72184645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15956.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	67.5	65.89	47.17	51.28	44.78	65.91	47.53	61.02	68.07
Merged-chr8-13649323-3	chr8	13648813	13649813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	L1M4|LINE|L1	28274.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	137.29	114.74	107.29	203.76	134.35	112.53	175.33	141.94	66.82
Merged-chr16-39197154-3	chr16	39196655	39197655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8205.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	11.44	9.68	0.0	9.45	7.93	20.09	16.9	18.57	18.74
Merged-chrUn_JH584304-40131-1	chrUn_JH584304	39631	40631	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19558.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	77.1	47.31	0.0
Merged-chr2-12033931-3	chr2	12033362	12034362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256109.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	26.31	23.96	7.4	35.09	23.33	12.86	14.79	12.38	10.62
Merged-chr13-81132883-3	chr13	81132381	81133381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	168807.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	176.19	194.45	131.34	258.42	179.61	155.93	255.6	257.34	105.55
Merged-chr19-38027053-3	chr19	38026572	38027572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	intron (NM_001302140, intron 1 of 53)	16505.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	37.18	37.32	42.55	55.33	47.12	63.5	33.8	36.26	31.23
Merged-chr12-102469067-3	chr12	102468557	102469557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199004)	promoter-TSS (NM_001199004)	-77.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	294.04	225.32	199.79	277.31	230.92	195.32	209.12	170.23	109.92
Merged-chr4-53826009-3	chr4	53825502	53826502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028053)	promoter-TSS (NM_028053)	-43.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	68.07	76.49	45.32	103.91	82.11	66.71	86.61	60.58	24.36
Merged-chr3-103801986-3	chr3	103801472	103802472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133865, exon 4 of 4)	3' UTR (NM_133865, exon 4 of 4)	-1157.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	182.49	202.28	141.52	158.56	114.76	143.88	156.32	185.71	101.8
Merged-chrX-145505256-1	chrX	145504756	145505756	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17617.0	NM_153319	27494.0	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	1.72	0.92	1.85	4.72	0.47	4.82	0.0	0.0	1.25
Merged-chr17-25274106-3	chr17	25273584	25274584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-40.0	NR_027452	100272221.0	Mm.478766	NR_027452		Gm17801	-	predicted gene, 17801	ncRNA	270.58	284.3	167.42	268.54	237.45	176.83	312.63	234.79	137.4
Merged-chr7-28338838-3	chr7	28338344	28339344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-125.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	300.33	319.32	218.29	215.23	191.73	179.24	276.72	294.93	159.88
Merged-chr2-153117294-3	chr2	153116753	153117753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	8785.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	131.0	115.2	111.92	135.62	85.84	69.93	96.11	107.45	73.69
Merged-chr19-34192635-3	chr19	34192152	34193152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360717)	promoter-TSS (NM_001360717)	-282.0	NM_001360717	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	336.37	299.51	228.46	296.2	309.76	270.07	409.8	472.23	189.86
Merged-chr7-90146505-3	chr7	90146006	90147006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	16293.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	107.55	101.83	48.1	110.65	111.96	73.95	118.29	128.67	48.71
Merged-chr13-44800220-3	chr13	44799720	44800720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	68949.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	12.01	15.21	11.1	14.17	12.13	5.63	15.84	11.94	7.49
Merged-chr11-75141268-3	chr11	75140790	75141790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 14 of 18)	intron (NM_001002764, intron 14 of 18)	26862.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	90.38	48.84	46.25	85.01	58.78	57.07	78.16	68.98	16.86
Merged-chr18-12224587-3	chr18	12224083	12225083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	PB1|SINE|Alu	11803.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	197.36	223.94	162.79	202.42	199.67	225.86	183.78	196.32	127.4
Merged-chr6-43266624-3	chr6	43266131	43267131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133674, intron 1 of 14)	intron (NM_133674, intron 1 of 14)	987.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	29.17	40.09	36.07	29.01	24.26	18.49	20.07	19.46	18.74
Merged-chr5-114784798-3	chr5	114784299	114785299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	9659.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	24.6	17.97	4.62	33.06	13.53	24.11	32.74	26.53	14.36
Merged-chr18-75366679-3	chr18	75366184	75367184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	404.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	84.66	107.36	101.74	126.17	121.76	118.96	113.01	145.92	91.81
Merged-chr4-16083302-1	chr4	16082802	16083802	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69414.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	8.58	8.29	11.1	11.47	7.0	11.25	11.62	8.84	7.49
Merged-chr5-135962656-3	chr5	135962160	135963160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160366, intron 9 of 10)	CpG	11816.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	147.59	108.75	134.12	119.43	110.1	115.75	138.36	129.11	87.43
Merged-chr15-76331205-3	chr15	76330702	76331702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010331)	promoter-TSS (NM_010331)	-92.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	72.08	79.72	101.74	82.99	74.17	69.93	83.44	64.11	63.08
Merged-chr11-109473834-3	chr11	109473348	109474348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134038)	promoter-TSS (NM_134038)	-252.0	NM_001029842	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	353.53	319.32	197.94	410.23	320.02	233.1	278.83	282.99	146.14
Merged-chr8-120103043-3	chr8	120102527	120103527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1555.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	192.78	238.23	175.74	263.81	230.92	217.83	274.61	393.09	129.9
Merged-chr8-10663992-3	chr8	10663485	10664485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218469.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	74.94	79.72	43.47	78.27	57.38	56.27	39.08	40.68	34.97
Merged-chr8-104565056-3	chr8	104564560	104565560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23751.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	2.29	1.38	0.0	4.72	1.87	1.61	3.17	0.88	0.0
Merged-chr12-111071929-3	chr12	111071408	111072408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	32110.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	212.23	197.22	158.17	236.15	189.87	180.05	222.86	254.25	123.03
Merged-chr16-87653104-3	chr16	87652608	87653608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45846.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	124.14	80.64	33.3	122.12	100.77	55.46	108.79	89.76	15.61
Merged-chr7-123371619-3	chr7	123371132	123372132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1717.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	201.93	245.14	117.47	199.72	216.46	223.45	203.84	282.54	163.0
Merged-chr2-130629950-3	chr2	130629430	130630430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146084)	promoter-TSS (NM_001146084)	97.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	137.86	174.18	91.57	178.13	168.88	141.47	162.65	154.32	81.19
Merged-chr7-19086193-3	chr7	19085686	19086686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037282)	promoter-TSS (NR_037282)	-642.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	106.97	77.87	70.3	134.94	78.37	98.87	171.1	171.56	78.69
Merged-chr11-86570450-3	chr11	86569941	86570941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13717.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	58.35	57.14	37.0	98.51	86.77	70.73	82.38	66.77	23.73
Merged-chr4-120666508-3	chr4	120666009	120667009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019563)	promoter-TSS (NM_019563)	-54.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	8.58	5.53	5.55	5.4	3.73	4.02	2.11	3.1	5.62
Merged-chr17-44783345-3	chr17	44782832	44783832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 1 of 11)	intron (NM_178652, intron 1 of 11)	6166.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	64.64	72.8	49.95	53.3	66.71	56.27	48.58	53.5	54.33
Merged-chr15-73148918-3	chr15	73148416	73149416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	36031.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	125.28	117.96	74.0	93.11	56.91	41.8	81.33	114.08	41.22
Merged-chr10-81182868-3	chr10	81182354	81183354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-153.0	NM_001190474	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	114.98	100.91	78.62	93.11	84.44	94.85	94.0	104.35	81.19
Merged-chr3-36469074-3	chr3	36468580	36469580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	6444.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	22.31	10.14	14.8	39.13	16.33	16.88	32.74	19.46	22.48
Merged-chr18-75342955-3	chr18	75342452	75343452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	24136.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	77.23	57.6	68.45	68.15	59.25	79.58	106.67	64.56	56.21
Merged-chr12-85943039-3	chr12	85942546	85943546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	118096.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	40.62	50.69	27.75	77.59	68.58	65.91	54.92	58.37	34.35
Merged-chr15-36608024-3	chr15	36607530	36608530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	266.0	239.61	209.04	265.84	195.47	173.62	292.56	217.99	159.88
Merged-chr17-34639776-3	chr17	34639273	34640273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	86.95	105.98	75.85	75.57	53.65	65.91	99.28	78.26	64.33
Merged-chr18-64516619-3	chr18	64516124	64517124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-67.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	275.73	330.84	180.37	262.47	333.55	204.97	283.06	356.39	147.39
Merged-chr6-97458186-3	chr6	97457687	97458687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	1099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	264.29	217.95	129.49	248.97	172.61	151.11	226.02	278.12	151.14
Merged-chr9-110101022-3	chr9	110100495	110101495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252683)	promoter-TSS (NM_001252683)	92.0	NM_001252683	72831.0	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	22.31	9.68	13.87	16.19	17.26	13.66	14.79	22.11	18.74
Merged-chr17-24886538-3	chr17	24886014	24887014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355396)	promoter-TSS (NM_001355396)	-129.0	NR_152137	79043.0	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	179.05	159.43	90.65	145.06	164.68	103.69	143.64	150.78	91.18
Merged-chr16-57482440-3	chr16	57481950	57482950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66792.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	33.75	22.58	8.32	36.43	22.39	27.33	17.96	12.38	6.25
Merged-chr3-68557149-3	chr3	68556699	68557699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113421, intron 2 of 7)	intron (NM_001113421, intron 2 of 7)	-15169.0	NM_013928	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	11.44	6.91	5.55	10.12	11.2	12.06	13.73	10.61	9.37
Merged-chr6-6310392-1	chr6	6309892	6310892	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	61733.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	1.14	2.3	0.92	2.7	0.93	3.22	0.0	2.21	2.5
Merged-chr1-151287733-3	chr1	151287236	151288236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56750.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	37.18	25.34	31.45	39.81	26.12	32.96	34.85	41.12	22.48
Merged-chr6-39076725-3	chr6	39076228	39077228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 10 of 12)	intron (NM_011539, intron 10 of 12)	-9142.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	23.45	17.05	16.65	24.96	18.66	16.08	32.74	30.95	31.23
Merged-chr12-87443855-3	chr12	87443382	87444382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026958)	promoter-TSS (NM_026958)	-14.0	NM_026958	380773.0	Mm.355701	NM_026958	ENSMUSG00000021040	Slirp	1810035L17Rik	SRA stem-loop interacting RNA binding protein	protein-coding	330.65	371.39	243.26	267.19	342.42	219.43	318.97	359.48	186.11
Merged-chrX-53370579-3	chrX	53370056	53371056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290514)	promoter-TSS (NM_001290514)	3.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	24.03	16.13	13.87	22.27	25.19	14.47	16.9	19.9	15.61
Merged-chr1-135620031-3	chr1	135619543	135620543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22267.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	63.5	71.88	83.25	62.07	69.98	94.85	66.54	78.71	89.93
Merged-chr7-143548327-3	chr7	143547808	143548808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285489, intron 1 of 14)	intron (NM_001285489, intron 1 of 14)	520.0	NM_001285490	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	191.07	267.72	191.47	230.75	275.71	215.42	269.33	243.63	134.27
Merged-chr4-109202168-3	chr4	109201652	109202652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	120.0	NM_133885	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	231.68	199.52	147.07	201.07	195.0	178.44	227.08	225.95	122.41
Merged-chr18-82785372-3	chr18	82784873	82785873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-26334.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	47.48	57.6	22.2	46.56	28.92	29.74	74.99	86.22	51.84
Merged-chr10-111119407-3	chr10	111118885	111119885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45417.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	22.88	25.8	22.2	23.62	23.33	20.9	23.24	18.57	21.23
Merged-chr10-13935890-1	chr10	13935390	13936390	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30185.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	5.72	5.53	1.85	3.37	3.27	0.0	4.22	7.52	2.5
Merged-chr6-86527150-2	chr6	86526602	86527602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-228.0	NR_037960	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	795.15	703.62	464.33	734.09	794.46	528.89	608.36	707.03	375.34
Merged-chr9-105803557-1	chr9	105803057	105804057	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 1 of 36)	ORR1E|LTR|ERVL-MaLR	6091.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	2.29	1.38	3.7	5.4	2.33	5.63	0.0	0.88	0.0
Merged-chr7-80993531-3	chr7	80993017	80994017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178707)	promoter-TSS (NM_178707)	-167.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	132.14	75.57	135.04	133.59	61.58	98.06	139.42	53.06	50.59
Merged-chr7-80640001-3	chr7	80639498	80640498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	3981.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	124.71	127.18	72.15	111.33	74.17	82.79	81.33	108.77	41.84
Merged-chr13-37331184-3	chr13	37330696	37331696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14149.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	23.45	22.58	27.75	37.78	17.26	37.78	31.69	23.88	45.59
Merged-chr4-132600714-3	chr4	132600207	132601207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36640.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	116.7	80.18	67.52	128.2	83.51	91.63	135.19	120.27	82.44
Merged-chr18-80225015-2	chr18	80224515	80225515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	18148.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	86.95	134.09	111.92	128.87	131.56	106.1	21.12	17.69	29.98
Merged-chr9-63758179-3	chr9	63757677	63758677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016769)	promoter-TSS (NM_016769)	-183.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	110.41	78.79	77.7	124.15	79.77	81.18	111.96	71.63	71.2
Merged-chr4-75275944-3	chr4	75275448	75276448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	2344.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	29.17	29.95	23.12	10.12	25.66	21.7	24.29	13.27	23.11
Merged-chr7-132575832-3	chr7	132575334	132576334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 1 of 9)	intron (NM_016978, intron 1 of 9)	564.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	416.46	331.3	246.96	375.14	272.91	270.07	312.63	275.91	205.47
Merged-chr16-49857758-3	chr16	49857254	49858254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	2100.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	216.81	244.68	145.22	219.96	201.53	163.17	260.88	346.22	104.3
Merged-chr4-137913551-4	chr4	137913077	137914077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 2 of 19)	CpG	51340.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	40.62	25.34	40.7	49.93	27.06	33.76	32.74	22.55	10.62
Merged-chr5-21372696-3	chr5	21372179	21373179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	6.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	89.24	103.68	40.7	112.68	82.11	45.82	144.7	191.9	67.45
Merged-chr12-101995041-2	chr12	101994536	101995536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016856, intron 8 of 14)	intron (NM_016856, intron 8 of 14)	19062.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	16.59	29.03	16.65	1.35	1.4	6.43	21.12	20.78	18.74
Merged-chr17-12159525-3	chr17	12159020	12160020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	40236.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	22.31	18.43	11.1	19.57	18.66	17.68	11.62	5.31	22.48
Merged-chr9-116145403-3	chr9	116144896	116145896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	29967.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	95.53	76.03	59.2	122.8	83.51	99.67	44.36	42.01	24.36
Merged-chr11-3130884-2	chr11	3130398	3131398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030207)	TTS (NM_030207)	6877.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.31	18.43	46.25	22.94	23.33	56.27	1.06	0.0	50.59
Merged-chr2-6471268-1	chr2	6470768	6471768	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118532.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	12.01	13.36	7.4	36.43	23.33	3.22	17.96	8.84	6.25
Merged-chr4-145774488-3	chr4	145773984	145774984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7059.0	NM_001083918	666532.0	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139	zinc finger protein 991	protein-coding	5.72	3.69	1.85	6.07	4.2	5.63	6.34	2.21	2.5
Merged-chr2-129592718-3	chr2	129592226	129593226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291021)	promoter-TSS (NM_001291021)	-113.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	319.21	273.71	203.49	337.36	273.84	262.84	276.72	307.75	176.74
Merged-chr2-117342277-3	chr2	117341756	117342756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 1 of 16)	intron (NM_011246, intron 1 of 16)	621.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	289.46	251.13	189.62	256.39	209.0	110.92	309.46	351.97	133.65
Merged-chr17-35380315-3	chr17	35379838	35380838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143689, intron 2 of 5)	CpG-6320	721.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	263.14	236.84	180.37	225.36	198.73	110.92	161.6	210.03	101.17
Merged-chr7-31156479-3	chr7	31155990	31156990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5319.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	54.92	61.75	61.97	73.54	41.52	68.32	92.94	54.83	48.71
Merged-chr1-9700570-3	chr1	9700047	9701047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290397)	promoter-TSS (NM_001290397)	-338.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	39.47	17.97	21.27	34.41	21.46	24.11	44.36	22.55	30.6
Merged-chr12-69987150-3	chr12	69986638	69987638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022028)	promoter-TSS (NM_022028)	-136.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	125.85	88.47	116.54	130.22	77.44	111.73	121.46	64.11	66.2
Merged-chr7-112023481-5	chr7	112022978	112023978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177249)	promoter-TSS (NM_177249)	-28.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	184.77	185.24	170.19	199.72	189.4	135.04	238.7	179.08	124.91
Merged-chr5-117158808-3	chr5	117158286	117159286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	25198.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	162.46	144.23	118.39	141.69	97.5	103.69	137.3	166.25	85.56
Merged-chr12-110485721-3	chr12	110485202	110486202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-37.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	343.8	620.22	349.63	310.37	503.36	398.68	378.11	546.52	252.93
Merged-chr13-43560283-3	chr13	43559774	43560774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081059)	promoter-TSS (NM_001081059)	-83.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	225.96	168.65	175.74	221.31	138.55	139.06	215.46	208.7	94.93
Merged-chr12-99883519-3	chr12	99883025	99884025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-83.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	18.31	35.02	29.6	22.27	25.66	18.49	22.18	27.86	16.24
Merged-chr19-58116981-3	chr19	58116487	58117487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65820.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	77.23	79.25	61.97	91.09	60.65	81.99	66.54	48.2	36.85
Merged-chr14-21148543-3	chr14	21148062	21149062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 3 of 10)	intron (NM_134079, intron 3 of 10)	72410.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	15.45	5.99	10.17	13.49	13.06	10.45	15.84	5.31	11.24
Merged-chr6-124898520-3	chr6	124898041	124899041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10341.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	39.47	12.44	8.32	34.41	5.6	12.86	17.96	11.94	8.74
Merged-chr16-13717125-3	chr16	13716635	13717635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011987, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-12701.0	NR_040574	76684.0	Mm.491043	NR_040574	ENSMUSG00000086550	Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	40.04	37.78	41.62	29.69	27.52	62.7	55.98	55.71	49.34
Merged-chr5-113931074-3	chr5	113930567	113931567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22361.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	14.87	9.22	4.62	15.52	9.8	6.43	6.34	5.75	6.87
Merged-chr12-100067611-3	chr12	100067108	100068108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-44723.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	49.77	85.25	82.32	89.06	92.84	77.97	114.07	100.81	60.58
Merged-chr2-26911340-1	chr2	26910840	26911840	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011513)	promoter-TSS (NM_011513)	533.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	180.77	145.15	115.62	181.5	139.49	133.43	107.73	118.06	103.05
Merged-chr18-10610252-3	chr18	10609761	10610761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081222)	promoter-TSS (NM_001081222)	91.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	240.83	233.16	201.64	263.81	255.18	209.79	212.29	163.6	124.91
Merged-chr5-9161114-1	chr5	9160614	9161614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_152859, intron 1 of 16)	CpG	662.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	156.74	141.46	162.79	165.98	123.16	159.15	186.94	110.98	118.04
Merged-chr9-40701919-2	chr9	40701411	40702411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	RLTR12D|LTR|ERVK	15947.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	38.33	47.46	52.72	53.98	37.79	43.4	3.17	1.77	2.5
Merged-chr7-30650281-3	chr7	30649773	30650773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133693)	promoter-TSS (NM_133693)	-45.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	177.91	231.77	149.84	156.53	163.28	139.86	179.55	189.25	174.24
Merged-chr8-14884526-3	chr8	14884020	14885020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4016.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	14.3	8.29	9.25	15.52	12.6	20.9	39.08	28.3	11.24
Merged-chr8-88662523-3	chr8	88662031	88663031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 3 of 12)	intron (NM_145857, intron 3 of 12)	15184.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	153.31	95.84	81.4	108.63	76.51	92.44	99.28	95.95	68.7
Merged-chr12-110486240-3	chr12	110485723	110486723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	484.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	306.05	527.6	305.23	282.03	438.52	349.65	314.74	455.43	214.21
Merged-chr2-50676419-1	chr2	50675919	50676919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-233265.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	72.65	106.44	46.25	0.67	0.93	2.41	3.17	0.44	0.0
Merged-chr7-133048265-3	chr7	133047743	133048743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32996.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	74.94	103.68	89.72	87.71	73.24	99.67	108.79	118.94	68.07
Merged-chr18-77837709-3	chr18	77837214	77838214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 2 of 14)	intron (NM_013831, intron 2 of 14)	-41324.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	141.3	131.32	82.32	106.61	64.38	75.56	99.28	97.28	78.69
Merged-chr10-128459190-4	chr10	128458710	128459710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114096)	promoter-TSS (NM_001114096)	-26.0	NM_001114096	68094.0	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	154.45	179.71	127.64	147.76	117.56	137.45	167.93	163.16	79.32
Merged-chr7-129760003-3	chr7	129759497	129760497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168134.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	16.59	15.21	16.65	18.89	20.99	37.78	8.45	10.61	14.36
Merged-chr6-114293564-3	chr6	114293067	114294067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	10932.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	81.8	64.51	44.4	58.03	46.18	44.21	74.99	45.99	18.11
Merged-chr7-132316504-5	chr7	132316051	132317051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028578, exon 1 of 1)	non-coding (NR_028578, exon 1 of 1)	475.0	NM_001360768	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	272.87	259.88	212.74	242.9	172.61	132.63	196.45	207.38	133.02
Merged-chr4-42950279-3	chr4	42949782	42950782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	-114.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	363.83	214.73	188.69	264.49	195.93	163.97	259.82	191.9	171.75
Merged-chr11-121804385-3	chr11	121803893	121804893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	183.06	177.4	149.84	289.45	208.53	221.85	240.81	222.85	142.39
Merged-chr17-34305803-3	chr17	34305291	34306291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010382)	promoter-TSS (NM_010382)	-76.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	275.73	238.23	148.92	153.16	86.3	114.94	283.06	316.59	147.39
Merged-chr8-126536334-3	chr8	126535820	126536820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57116.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.87	3.69	5.55	39.81	14.0	3.22	19.01	4.86	3.12
Merged-chr15-102625314-3	chr15	102624792	102625792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310070, exon 1 of 12)	5' UTR (NM_001310070, exon 1 of 12)	172.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	161.89	147.45	134.12	162.61	185.2	156.74	183.78	212.24	81.81
Merged-chr2-172400114-3	chr2	172399608	172400608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	L2c|LINE|L2	6314.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	78.94	37.32	13.87	65.45	29.39	16.88	40.14	23.43	19.98
Merged-chr11-31898746-3	chr11	31898236	31899236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	URR1A|DNA|hAT-Charlie	27796.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	62.35	82.02	48.1	95.81	80.71	49.83	108.79	107.89	74.32
Merged-chr11-82871236-3	chr11	82870731	82871731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164571)	promoter-TSS (NM_001164571)	-21.0	NM_001164571	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	199.65	183.85	196.09	197.02	169.34	176.83	171.1	184.83	123.66
Merged-chr1-170709708-3	chr1	170709209	170710209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	65177.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	37.76	35.02	24.05	77.59	41.52	58.68	43.3	63.67	43.09
Merged-chr9-58802482-3	chr9	58801974	58802974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21038.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	28.03	34.56	25.9	26.99	15.86	27.33	30.63	27.86	30.6
Merged-chr14-102806786-3	chr14	102806356	102807356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175776.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	232.83	179.25	147.07	181.5	132.95	163.17	203.84	184.38	141.14
Merged-chr9-123863376-3	chr9	123862876	123863876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	48.05	103.68	80.47	43.86	65.31	86.01	94.0	123.81	102.42
Merged-chr19-32756237-4	chr19	32755811	32756811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1266.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	363.83	319.32	218.29	343.43	275.24	207.38	298.9	311.73	189.23
Merged-chr9-118658860-3	chr9	118658354	118659354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 6 of 27)	intron (NM_133721, intron 6 of 27)	52145.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	115.55	91.24	75.85	162.61	127.82	152.72	129.91	156.53	76.82
Merged-chr3-28781193-3	chr3	28780681	28781681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177586)	promoter-TSS (NM_177586)	-96.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	4.0	7.37	4.62	11.47	3.27	7.23	8.45	5.75	3.75
Merged-chr7-127904094-3	chr7	127903600	127904600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009739)	promoter-TSS (NM_009739)	27.0	NM_009739	12041.0	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	32.04	30.41	22.2	43.86	32.66	32.15	34.85	29.18	24.98
Merged-chr11-113165298-1	chr11	113164798	113165798	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	36540.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.14	0.0	0.92	2.7	0.93	3.22	5.28	3.98	2.5
Merged-chr6-83121532-3	chr6	83121008	83122008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016757)	promoter-TSS (NM_016757)	-47.0	NM_001083922	22377.0	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	76.66	51.15	61.05	53.3	35.92	65.11	63.37	50.85	36.22
Merged-chr17-31564503-3	chr17	31564001	31565001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-272.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	150.45	140.08	85.1	149.11	132.02	131.02	164.76	151.22	123.66
Merged-chr5-95914269-3	chr5	95913765	95914765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42674.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	22.31	45.62	36.07	42.51	33.59	45.01	17.96	15.03	19.98
Merged-chr6-30304488-3	chr6	30303992	30304992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169576)	promoter-TSS (NM_001169576)	47.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	379.27	253.43	174.82	361.65	187.54	151.92	298.9	187.48	100.55
Merged-chr11-52080166-3	chr11	52079663	52080663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-18661.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	51.48	29.95	20.35	55.33	34.06	42.6	24.29	33.16	18.11
Merged-chr7-138909600-3	chr7	138909098	138910098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009760)	promoter-TSS (NM_009760)	-92.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	45.19	26.26	18.5	51.28	42.92	38.58	45.42	31.39	16.24
Merged-chr17-27074472-3	chr17	27073967	27074967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080553, intron 2 of 57)	intron (NM_080553, intron 2 of 57)	-16778.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	40.62	37.78	42.55	45.21	26.59	47.42	21.12	12.38	9.99
Merged-chr7-19326558-3	chr7	19326063	19327063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16518.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	181.91	154.82	74.92	176.1	106.83	58.68	170.05	186.59	79.32
Merged-chr10-83543985-3	chr10	83543494	83544494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033375)	promoter-TSS (NM_001033375)	53.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	217.38	149.29	168.34	160.58	125.49	114.94	168.99	105.68	92.43
Merged-chr8-122932609-3	chr8	122932106	122933106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	84232.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	95.53	68.66	44.4	79.62	62.51	31.35	41.19	53.06	39.35
Merged-chr11-94589566-3	chr11	94589067	94590067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	12219.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	101.83	95.38	90.65	106.61	63.45	53.05	134.14	128.23	68.07
Merged-chr17-86753553-3	chr17	86753065	86754065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-299.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	40.62	28.11	23.12	77.59	77.91	91.63	44.36	24.76	23.11
Merged-chr18-65698532-3	chr18	65698023	65699023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	255.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	264.29	229.01	137.82	292.15	288.77	183.26	171.1	209.15	99.3
Merged-chr18-20648632-3	chr18	20648153	20649153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	-16597.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	127.0	131.32	83.25	135.62	92.84	122.98	135.19	158.74	73.07
Merged-chr5-31220706-3	chr5	31220221	31221221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008014)	promoter-TSS (NM_008014)	-176.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	230.54	181.09	184.07	166.66	155.81	159.95	145.75	162.72	116.16
Merged-chr18-4836991-3	chr18	4836481	4837481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	24495.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.86	12.44	7.4	14.84	10.73	16.08	3.17	0.88	5.0
Merged-chr2-34799865-3	chr2	34799358	34800358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	54.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	141.87	176.94	114.69	147.09	137.62	120.57	118.29	150.34	101.17
Merged-chr19-6278310-3	chr19	6277813	6278813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	1417.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	209.94	150.22	59.2	210.51	118.96	122.98	123.57	129.11	99.3
Merged-chr15-82346088-5	chr15	82345636	82346636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	90.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	193.93	186.16	148.92	171.38	140.89	161.56	162.65	186.15	106.17
Merged-chr19-57610684-4	chr19	57610118	57611118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-416.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	275.73	289.37	227.54	219.96	222.99	270.07	242.92	182.62	187.98
Merged-chr10-81356534-3	chr10	81356056	81357056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028657)	promoter-TSS (NM_028657)	-935.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	176.76	116.12	123.02	197.69	154.88	136.64	149.98	179.08	111.17
Merged-chr12-102437175-3	chr12	102436675	102437675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	RSINE1|SINE|B4	2638.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	335.8	281.54	172.97	352.88	240.25	168.8	303.13	344.89	178.61
Merged-chr15-79354815-3	chr15	79354312	79355312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304832, intron 1 of 2)	intron (NM_001304832, intron 1 of 2)	6410.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	19.45	10.14	5.55	23.62	14.0	12.86	34.85	26.09	9.99
Merged-chr5-52383897-3	chr5	52383391	52384391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 11 of 11)	intron (NM_001256059, intron 11 of 11)	20087.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	14.3	7.83	5.55	4.05	4.67	3.22	10.56	4.42	0.0
Merged-chr5-112341522-3	chr5	112341022	112342022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153106, intron 1 of 6)	intron (NR_153106, intron 1 of 6)	1518.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	86.95	101.37	103.59	87.04	84.44	132.63	89.78	106.56	60.58
Merged-chr7-45515649-3	chr7	45515142	45516142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045555, intron 4 of 13)	intron (NM_001045555, intron 4 of 13)	1040.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	18.31	6.45	1.85	15.52	9.33	14.47	2.11	7.96	5.0
Merged-chr5-64029932-3	chr5	64029429	64030429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15044.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	9.15	8.29	1.85	7.42	10.26	3.22	48.58	44.66	26.23
Merged-chr2-113848343-3	chr2	113847852	113848852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181416, exon 1 of 12)	5' UTR (NM_181416, exon 1 of 12)	309.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	150.45	189.84	203.49	149.11	139.02	180.05	231.3	265.74	133.65
Merged-chr5-31241389-3	chr5	31240888	31241888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147201, intron 1 of 17)	GC_rich|Low_complexity|Low_complexity	470.0	NM_147201	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	205.94	179.25	203.49	159.91	158.15	161.56	149.98	124.25	129.9
Merged-chr1-80659656-3	chr1	80659161	80660161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5691.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	69.22	77.41	81.4	53.98	53.65	70.73	65.48	70.75	63.08
Merged-chr6-127152526-1	chr6	127152026	127153026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-1478.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	16.02	15.21	5.55	8.77	3.27	4.02	6.34	0.44	2.5
Merged-chr1-87625459-3	chr1	87624987	87625987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	L1MB7|LINE|L1	5175.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	278.59	241.45	160.02	262.47	167.48	183.26	228.14	210.03	148.64
Merged-chr10-53629461-3	chr10	53628972	53629972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027830, intron 2 of 13)	CpG	967.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	162.46	118.88	108.22	128.2	101.23	64.3	171.1	129.11	61.2
Merged-chr13-103924284-3	chr13	103923778	103924778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3692.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	45.76	41.93	43.47	55.33	30.32	25.72	45.42	40.24	38.72
Merged-chr14-21848980-3	chr14	21848489	21849489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026965)	promoter-TSS (NM_026965)	-79.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	54.35	32.25	29.6	67.47	46.65	55.46	50.7	44.22	13.12
Merged-chr8-35376547-3	chr8	35376003	35377003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	CpG	762.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	190.49	128.1	103.59	156.53	121.29	122.98	128.85	127.79	73.07
Merged-chr19-46339382-3	chr19	46338867	46339867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-707.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	314.06	269.1	222.91	261.12	185.67	233.9	288.34	324.99	147.39
Merged-chr10-128059788-3	chr10	128059302	128060302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019766, intron 1 of 7)	CpG	820.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	452.49	435.9	202.56	411.58	434.32	228.28	323.19	361.25	161.75
Merged-chr2-79253495-3	chr2	79253006	79254006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1920.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	37.18	39.63	28.67	33.74	21.93	29.74	38.02	25.65	21.86
Merged-chr14-104005447-3	chr14	104004922	104005922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	21720.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	11.44	10.14	2.77	22.27	6.06	7.23	13.73	7.96	0.0
Merged-chr17-30516963-1	chr17	30516463	30517463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 5 of 11)	MTC|LTR|ERVL-MaLR	59324.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	25.74	16.59	25.9	3.37	3.27	8.04	10.56	6.19	1.25
Merged-chr15-78599342-3	chr15	78598837	78599837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	2290.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	42.33	45.62	51.8	56.68	44.78	66.71	87.66	52.18	43.72
Merged-chr2-156864507-3	chr2	156864025	156865025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026124, intron 1 of 3)	B4A|SINE|B4	1403.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	134.43	130.86	92.5	177.45	104.03	139.06	170.05	141.49	94.3
Merged-chr15-10876522-3	chr15	10876043	10877043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	47492.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	212.23	233.16	155.39	201.74	188.0	145.49	278.83	303.77	144.27
Merged-chr2-130525561-4	chr2	130524972	130525972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 7 of 21)	B2_Mm2|SINE|B2	38277.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	62.35	66.81	48.1	204.44	183.8	126.19	87.66	83.57	63.7
Merged-chr16-18733320-3	chr16	18732844	18733844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43503.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	54.35	32.72	13.87	72.87	48.98	45.01	42.25	35.37	5.0
Merged-chr17-80373549-3	chr17	80373050	80374050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028385)	promoter-TSS (NR_028385)	-8.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	5.72	6.45	1.85	20.24	14.0	4.02	17.96	7.96	4.37
Merged-chr8-117482002-3	chr8	117481530	117482530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16245.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	141.3	111.05	103.59	109.3	68.58	123.78	132.02	156.09	88.06
Merged-chr1-7894863-1	chr1	7894363	7895363	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	805943.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.43	4.61	6.47	8.77	0.93	3.22	3.17	1.33	2.5
Merged-chr5-120511162-3	chr5	120510665	120511665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133221)	promoter-TSS (NM_133221)	-27.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	155.6	151.6	123.94	170.03	133.89	130.21	160.54	180.85	88.06
Merged-chr2-129100998-3	chr2	129100530	129101530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009086)	promoter-TSS (NM_009086)	34.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	21.74	15.67	8.32	33.74	20.06	32.96	42.25	23.43	15.61
Merged-chr11-115001681-3	chr11	115001141	115002141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134158, exon 1 of 4)	5' UTR (NM_134158, exon 1 of 4)	239.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	66.93	70.04	96.2	246.95	155.35	164.78	261.93	270.16	172.37
Merged-chr15-38299996-3	chr15	38299495	38300495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357677)	promoter-TSS (NM_001357677)	-95.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	293.46	256.2	280.26	309.7	242.12	289.36	280.95	302.0	210.47
Merged-chr19-6969814-3	chr19	6969318	6970318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008874)	promoter-TSS (NM_008874)	-4.0	NM_001290349	18797.0	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	26.89	15.21	17.57	15.52	9.8	21.7	25.35	13.27	15.61
Merged-chr5-123863204-3	chr5	123862690	123863690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030701)	TTS (NM_030701)	2326.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	219.1	234.08	139.67	233.45	174.01	100.47	234.47	316.59	131.15
Merged-chr7-12834907-5	chr7	12834428	12835428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360576, exon 1 of 8)	5' UTR (NM_001360576, exon 1 of 8)	167.0	NM_001360576	65020.0	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	187.63	263.11	145.22	155.86	146.95	176.83	232.36	231.25	169.87
Merged-chr13-113589730-3	chr13	113589230	113590230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28834.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	211.66	152.52	74.0	240.87	184.74	132.63	172.16	203.84	74.32
Merged-chr11-68655755-3	chr11	68655272	68656272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36143.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	77.23	92.62	77.7	124.82	139.95	148.7	96.11	129.11	106.17
Merged-chr1-137898513-3	chr1	137898026	137899026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67929.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	46.91	46.08	38.85	44.53	48.52	49.83	54.92	60.13	37.47
Merged-chr16-94312788-3	chr16	94312282	94313282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	781.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	407.87	493.5	234.94	439.24	421.26	222.65	381.28	468.26	149.89
Merged-chr5-117417171-3	chr5	117416671	117417671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	MTC|LTR|ERVL-MaLR	3169.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	197.93	148.37	131.34	170.7	97.03	98.87	201.73	170.68	105.55
Merged-chr2-128870924-3	chr2	128870426	128871426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	6994.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	36.04	15.67	7.4	114.03	42.92	29.74	17.96	23.88	13.12
Merged-chr3-88403657-3	chr3	88403131	88404131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	(A)n|Simple_repeat|Simple_repeat	6766.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	65.79	63.59	76.77	59.38	58.31	90.02	69.71	88.88	59.95
Merged-chr4-128733712-3	chr4	128733216	128734216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6145.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	185.35	172.33	126.72	156.53	131.09	124.59	106.67	127.79	67.45
Merged-chrX-12165324-3	chrX	12164798	12165798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	20.59	11.06	14.8	23.62	8.86	17.68	12.67	10.61	13.74
Merged-chr6-97463921-3	chr6	97463433	97464433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-4647.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	354.1	348.81	201.64	321.84	309.76	286.95	286.23	411.22	166.12
Merged-chr5-31202350-3	chr5	31201828	31202828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175311)	promoter-TSS (NM_175311)	-25.0	NM_175311	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	582.92	422.54	310.78	555.29	371.34	339.2	396.07	405.91	198.6
Merged-chr6-122575905-3	chr6	122575441	122576441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	22132.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	59.49	45.16	49.02	49.25	36.39	31.35	35.91	29.63	38.1
Merged-chr1-92934495-4	chr1	92934008	92935008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	100.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	212.23	226.25	159.09	184.2	197.33	208.98	214.41	222.41	118.04
Merged-chr11-107189349-3	chr11	107188840	107189840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161329)	promoter-TSS (NM_001161329)	41.0	NM_133702	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	58.35	56.22	58.27	59.38	54.58	61.89	81.33	58.81	24.98
Merged-chr9-66887027-3	chr9	66886557	66887557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	32648.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	181.34	163.58	149.84	191.62	153.01	110.92	194.34	164.04	106.17
Merged-chr16-84990085-3	chr16	84989602	84990602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	intron (NM_001198825, intron 12 of 15)	17891.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	17.16	22.12	25.9	47.9	21.93	36.17	21.12	23.43	20.61
Merged-chr10-41519949-1	chr10	41519449	41520449	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016898, intron 1 of 5)	CpG	449.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	304.9	291.68	219.21	286.08	230.92	205.77	309.46	245.4	239.82
Merged-chr10-95844049-3	chr10	95843552	95844552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-96611.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	38.33	23.96	23.12	18.22	11.66	28.13	25.35	24.76	24.98
Merged-chr4-59003139-3	chr4	59002638	59003638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033165)	promoter-TSS (NM_001033165)	-55.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	105.26	41.01	29.6	58.7	37.79	51.44	74.99	27.41	33.72
Merged-chr4-117289349-5	chr4	117288826	117289826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310731, exon 1 of 11)	5' UTR (NM_001310731, exon 1 of 11)	129.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	189.35	105.06	120.24	221.31	113.36	125.39	197.51	103.91	69.95
Merged-chr16-27387882-3	chr16	27387375	27388375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1081.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	135.0	183.85	116.54	146.41	106.83	83.59	121.46	139.28	107.42
Merged-chr17-69181403-3	chr17	69180878	69181878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22022.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	277.45	328.54	196.09	238.18	264.98	211.4	259.82	334.72	172.99
Merged-chr5-120503265-1	chr5	120502765	120503765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	CpG	358.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	149.88	137.77	114.69	155.19	183.8	136.64	270.38	199.42	94.93
Merged-chr12-31950438-3	chr12	31949955	31950955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361928)	promoter-TSS (NM_001361928)	-210.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	294.04	319.32	202.56	243.57	289.24	177.64	272.5	306.42	119.28
Merged-chr11-5542299-3	chr11	5541780	5542780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-63.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	104.11	125.79	106.37	119.43	87.7	77.16	114.07	147.68	62.45
Merged-chr13-29984932-3	chr13	29984453	29985453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	-562.0	NM_001359994	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	177.91	150.68	185.92	131.57	124.56	132.63	184.83	168.91	107.42
Merged-chr10-8874823-3	chr10	8874309	8875309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	11261.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	390.14	277.39	267.31	432.49	270.11	260.43	325.31	297.14	160.5
Merged-chr7-19876940-3	chr7	19876435	19877435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11030.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	78.94	56.68	35.15	71.52	70.91	46.62	101.39	83.57	44.97
Merged-chr5-90696285-3	chr5	90695784	90696784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55757.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	72.08	70.04	51.8	62.75	76.04	70.73	33.8	30.95	61.2
Merged-chr5-105623044-3	chr5	105622588	105623588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76881.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	152.74	164.04	79.55	139.67	97.97	67.52	143.64	166.7	84.94
Merged-chr1-172082734-3	chr1	172082240	172083240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021607)	promoter-TSS (NM_021607)	9.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	360.39	337.29	236.79	341.41	297.63	240.33	311.57	315.71	174.87
Merged-chr13-58128807-5	chr13	58128318	58129318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029872)	promoter-TSS (NM_029872)	-262.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	600.08	373.24	374.61	488.5	309.76	315.09	439.37	256.9	211.09
Merged-chr11-82022839-3	chr11	82022322	82023322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12755.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	82.95	58.52	43.47	92.44	31.26	45.01	48.58	53.5	33.1
Merged-chr6-125039700-3	chr6	125039199	125040199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133345)	promoter-TSS (NM_133345)	-149.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	203.08	189.38	156.32	148.44	126.42	114.94	203.84	261.76	126.78
Merged-chr3-136671067-7	chr3	136670514	136671514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	CpG	948.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	131.57	120.73	151.69	126.17	126.89	139.86	157.37	128.23	77.44
Merged-chr12-116435463-3	chr12	116434980	116435980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30078.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	24.03	28.11	28.67	18.22	14.93	16.88	104.56	89.32	43.09
Merged-chr13-64402115-3	chr13	64401631	64402631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30422.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	46.34	76.95	35.15	68.82	57.85	67.52	49.64	49.52	43.09
Merged-chr5-99214678-3	chr5	99214171	99215171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38256.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	120.7	77.87	68.45	79.62	54.58	54.66	77.1	62.35	33.1
Merged-chr2-14631813-3	chr2	14631301	14632301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023116, intron 2 of 13)	intron (NM_023116, intron 2 of 13)	27495.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	6.29	7.83	7.4	7.42	8.4	9.65	6.34	12.38	12.49
Merged-chr5-135934676-3	chr5	135934159	135935159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-18.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	335.22	289.37	221.06	336.01	300.9	258.82	241.87	310.4	164.88
Merged-chr4-141873868-2	chr4	141873351	141874351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1069.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	233.97	178.78	211.81	172.73	103.56	145.49	251.37	199.42	157.38
Merged-chr2-148489117-3	chr2	148488622	148489622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-45587.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	70.93	79.72	60.12	72.87	72.78	57.87	47.53	56.6	39.97
Merged-chr17-57290963-3	chr17	57290475	57291475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	11875.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	139.58	123.49	108.22	178.13	130.62	130.21	128.85	145.03	57.46
Merged-chr9-119937572-3	chr9	119937086	119938086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028976)	promoter-TSS (NM_028976)	-20.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	76.08	49.76	56.42	61.4	77.91	90.02	79.21	68.98	41.84
Merged-chr11-68852643-1	chr11	68852143	68853143	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023668, intron 1 of 8)	CpG	488.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	467.94	432.68	354.26	453.41	447.85	343.22	399.24	394.86	221.71
Merged-chr9-65031604-3	chr9	65031093	65032093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-865.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	69.22	75.57	36.07	60.05	60.65	72.34	66.54	83.13	46.22
Merged-chr11-74830440-3	chr11	74829939	74830939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-485.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	426.18	274.63	262.69	410.23	242.12	176.03	289.39	334.72	163.0
Merged-chr4-132510537-3	chr4	132510040	132511040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144907)	promoter-TSS (NM_144907)	-84.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	72.65	81.1	67.52	68.15	91.9	83.59	91.89	104.35	58.08
Merged-chr12-119370072-3	chr12	119369586	119370586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73324.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	56.63	46.08	37.92	50.6	31.72	35.37	51.75	62.35	38.1
Merged-chr1-172633065-3	chr1	172632556	172633556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026725)	promoter-TSS (NM_026725)	-82.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	248.84	227.17	160.02	267.19	212.26	186.48	236.59	273.26	134.9
Merged-chr3-121815178-4	chr3	121814726	121815726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355756)	promoter-TSS (NM_001355756)	76.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	129.28	96.76	84.17	145.06	108.7	94.04	148.92	99.49	68.7
Merged-chr13-99288078-3	chr13	99287560	99288560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56618.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	88.1	94.46	74.0	85.01	60.18	84.4	144.7	156.09	83.06
Merged-chr2-35463598-3	chr2	35463089	35464089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-2140.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	42.9	42.39	20.35	50.6	37.79	33.76	26.4	26.97	24.36
Merged-chr3-69634171-3	chr3	69633649	69634649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35189.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	173.9	166.8	86.02	155.19	137.62	139.86	143.64	150.34	85.56
Merged-chr6-72439127-3	chr6	72438625	72439625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046011, exon 1 of 1)	non-coding (NR_046011, exon 1 of 1)	433.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	165.9	148.37	131.34	214.56	190.34	147.09	164.76	217.55	145.51
Merged-chr10-42762332-3	chr10	42761834	42762834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359285, intron 1 of 19)	intron (NM_001359285, intron 1 of 19)	838.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	241.98	174.18	148.92	192.29	162.81	171.21	163.71	140.61	127.4
Merged-chr3-129878564-3	chr3	129878059	129879059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-47.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	53.2	32.25	14.8	66.8	46.65	24.11	50.7	29.18	7.49
Merged-chr7-19003310-3	chr7	19002804	19003804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178757)	promoter-TSS (NM_178757)	-761.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	54.35	71.42	53.65	24.96	41.99	39.39	91.89	90.2	65.58
Merged-chr4-43031452-3	chr4	43030931	43031931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023231)	promoter-TSS (NM_023231)	-47.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	105.83	99.99	84.17	138.99	109.16	73.95	106.67	89.32	56.21
Merged-chr6-143100200-3	chr6	143099689	143100689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	-37.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	49.2	45.62	40.7	58.7	36.85	58.68	117.24	87.99	39.35
Merged-chr3-19188203-3	chr3	19187736	19188736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356295)	promoter-TSS (NM_001356295)	-59.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	36.04	43.31	23.12	54.65	62.05	51.44	67.6	48.2	38.72
Merged-chr3-19311363-3	chr3	19310985	19311985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122759)	promoter-TSS (NM_001122759)	-163.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	108.12	75.57	101.74	102.56	57.38	73.95	99.28	55.71	43.72
Merged-chr9-107547243-3	chr9	107546716	107547716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053253)	promoter-TSS (NM_053253)	-94.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	14.3	5.99	9.25	10.8	7.0	9.65	10.56	10.61	7.49
Merged-chr5-97111748-3	chr5	97111249	97112249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198422)	promoter-TSS (NM_198422)	-153.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	61.21	40.55	32.37	43.18	27.52	49.83	67.6	34.93	34.35
Merged-chr1-165651378-3	chr1	165650873	165651873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 5 of 5)	intron (NM_001038846, intron 5 of 5)	-16832.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	20.02	17.97	12.95	18.89	14.0	34.56	23.24	22.55	18.11
Merged-chr11-69429541-3	chr11	69429049	69430049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 76 of 85)	intron (NM_001081330, intron 76 of 85)	-15874.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	50.91	34.56	47.17	58.03	36.39	75.56	65.48	67.65	64.95
Merged-chr8-4325191-3	chr8	4324699	4325699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010485)	promoter-TSS (NM_010485)	-11.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	334.08	273.25	229.39	267.86	236.52	262.84	265.1	222.85	182.99
Merged-chr19-28917994-3	chr19	28917483	28918483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45937.0	NM_028922	74411.0	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	61.21	44.7	42.55	44.53	38.72	11.25	137.3	96.83	34.97
Merged-chr15-41612419-3	chr15	41611909	41612909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	MIR3|SINE|MIR	163306.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	98.39	82.02	52.72	80.29	50.38	57.07	44.36	59.25	25.61
Merged-chr9-41068074-3	chr9	41067583	41068583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	MLT1E3|LTR|ERVL-MaLR	11423.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	35.47	27.19	34.22	31.71	22.86	28.94	23.24	23.88	21.23
Merged-chr13-67451598-3	chr13	67451118	67452118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177712)	promoter-TSS (NM_177712)	6.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	33.18	55.29	36.07	33.06	54.11	48.23	59.15	47.31	44.97
Merged-chr1-24100404-3	chr1	24099877	24100877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026604)	promoter-TSS (NM_026604)	-36.0	NM_026604	68187.0	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	65.79	44.7	31.45	56.68	41.52	29.74	36.97	23.88	11.24
Merged-chr15-76576495-4	chr15	76576017	76577017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172960, intron 1 of 14)	CpG	158.0	NR_073123	268822.0	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	121.28	83.4	115.62	103.23	72.31	111.73	105.62	94.62	70.57
Merged-chr8-4613730-1	chr8	4613230	4614230	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	560.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	70.36	111.51	71.22	91.76	62.51	69.13	118.29	71.63	58.71
Merged-chr2-11501456-3	chr2	11500946	11501946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	644.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	192.78	155.75	123.94	248.3	297.17	168.8	205.96	232.58	75.57
Merged-chrX-137038243-3	chrX	137037741	137038741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082412)	promoter-TSS (NM_001082412)	61.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	113.84	101.83	68.45	112.0	107.76	93.24	82.38	110.98	63.7
Merged-chr9-41161623-3	chr9	41161120	41162120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3558.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	106.4	82.48	80.47	97.83	65.31	75.56	142.59	118.06	111.79
Merged-chr6-55203350-3	chr6	55202868	55203868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177883)	promoter-TSS (NM_177883)	-15.0	NM_177883	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	16.02	12.9	16.65	17.54	23.79	10.45	28.52	15.92	16.24
Merged-chr12-76194704-3	chr12	76194206	76195206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-17447.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	16.59	15.21	7.4	13.49	9.33	8.04	8.45	11.5	3.75
Merged-chr3-127410389-1	chr3	127409889	127410889	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	-1331.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	4.0	1.38	5.55	3.37	2.33	1.61	25.35	19.01	13.74
Merged-chr9-123717681-3	chr9	123717202	123718202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033322)	promoter-TSS (NM_033322)	-77.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	54.35	62.21	27.75	48.58	38.25	28.13	47.53	48.2	29.98
Merged-chr7-45716251-3	chr7	45715750	45716750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	-1043.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	200.22	201.82	145.22	157.88	135.29	162.37	179.55	256.9	134.27
Merged-chr7-19871404-3	chr7	19870905	19871905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10106.0	NM_001033419	330483.0	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	135.0	96.76	64.75	149.11	104.96	77.16	154.2	119.83	48.71
Merged-chr2-132103567-3	chr2	132103074	132104074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	41534.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	422.18	425.3	230.31	414.28	448.78	309.46	374.95	594.71	227.33
Merged-chr5-139791923-2	chr5	139791397	139792397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	CpG	361.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	492.54	420.24	258.99	487.82	499.16	282.13	359.1	372.3	192.98
Merged-chr1-88652808-3	chr1	88652314	88653314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	49377.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	74.94	85.71	93.42	80.97	62.98	64.3	65.48	57.92	54.96
Merged-chr16-91355403-3	chr16	91354929	91355929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17354.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	457.07	432.22	221.99	397.41	319.09	234.71	316.86	462.06	193.6
Merged-chr2-120652998-3	chr2	120652503	120653503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43408.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	196.21	158.97	91.57	182.17	124.09	75.56	217.57	267.07	113.66
Merged-chrX-71050066-3	chrX	71049556	71050556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256048)	promoter-TSS (NM_001256048)	-200.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	61.78	41.93	34.22	34.41	18.19	25.72	27.46	18.57	17.49
Merged-chr2-52523285-3	chr2	52522815	52523815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	35296.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	90.96	73.26	48.1	83.66	66.24	69.93	81.33	75.17	78.07
Merged-chr6-134425380-1	chr6	134424880	134425880	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 2 of 5)	intron (NM_001355686, intron 2 of 5)	10952.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	35.47	49.76	33.3	60.72	41.99	61.89	31.69	44.22	37.47
Merged-chr11-115628252-3	chr11	115627766	115628766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026071)	promoter-TSS (NM_026071)	29.0	NM_001252394	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	62.93	38.25	49.95	74.89	38.25	57.07	103.51	82.24	37.47
Merged-chr8-14824647-1	chr8	14824147	14825147	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 11 of 15)	intron (NM_172910, intron 11 of 15)	-63889.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.58	1.84	1.85	2.02	0.47	0.8	40.14	24.76	13.12
Merged-chr15-62130555-3	chr15	62130062	62131062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88889.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	113.84	59.9	61.97	93.79	72.31	62.7	88.72	68.09	44.34
Merged-chr9-108490702-3	chr9	108490184	108491184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168371)	promoter-TSS (NM_001168371)	8.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	227.11	199.06	133.19	172.05	163.28	148.7	167.93	162.72	146.76
Merged-chr8-22935795-3	chr8	22935278	22936278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081149, exon 17 of 18)	exon (NM_001081149, exon 17 of 18)	-39058.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	17.16	19.81	12.02	17.54	21.46	17.68	21.12	9.73	9.99
Merged-chr6-11925850-3	chr6	11925354	11926354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029404)	promoter-TSS (NM_029404)	-27.0	NM_001362122	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	102.97	79.25	88.8	91.09	94.23	135.04	130.97	97.72	86.81
Merged-chr2-6256433-3	chr2	6255930	6256930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43436.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	117.27	124.87	74.92	149.79	119.89	105.3	94.0	101.26	64.95
Merged-chr1-189688202-3	chr1	189687710	189688710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-124.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	7.44	7.83	9.25	19.57	11.2	4.82	7.39	4.86	17.49
Merged-chr18-52165025-3	chr18	52164519	52165519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41473.0	NR_029788	723830.0		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	14.87	22.58	1.85	28.34	20.53	18.49	27.46	18.13	9.99
Merged-chr6-116013879-3	chr6	116013370	116014370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18865.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	56.63	79.25	29.6	67.47	61.11	71.54	62.31	57.04	48.71
Merged-chr2-166305165-3	chr2	166304675	166305675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31267.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	19.45	12.44	3.7	47.9	36.85	32.15	45.42	19.01	27.48
Merged-chr10-13832841-3	chr10	13832342	13833342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	36115.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	128.14	126.72	89.72	117.4	122.23	53.05	120.41	157.85	53.71
Merged-chr1-138982451-3	chr1	138981946	138982946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4789.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	67.5	83.4	53.65	100.53	90.97	88.42	134.14	146.8	76.19
Merged-chr5-149246197-3	chr5	149245682	149246682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18822.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	155.6	124.41	132.27	94.46	93.3	134.23	117.24	142.82	97.43
Merged-chr13-97869635-3	chr13	97869138	97870138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118526.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	8.01	12.44	5.55	26.99	5.6	6.43	8.45	9.29	5.0
Merged-chr4-59441440-3	chr4	59440885	59441885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-2752.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	81.8	71.42	70.3	77.59	74.64	106.1	62.31	79.15	39.97
Merged-chr9-64737704-3	chr9	64737209	64738209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	47.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	361.54	384.29	398.65	342.08	389.53	315.09	346.43	388.22	248.56
Merged-chr13-91807587-3	chr13	91807006	91808006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145453, intron 1 of 5)	CpG	190.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	429.61	457.1	269.16	382.56	418.46	265.25	363.33	338.7	230.45
Merged-chr10-77971994-3	chr10	77971483	77972483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2111.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	123.56	118.42	113.77	129.55	105.9	150.31	145.75	178.64	117.41
Merged-chr12-24601023-3	chr12	24600533	24601533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	20314.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	5.72	2.3	1.85	3.37	3.27	1.61	3.17	0.44	3.75
Merged-chr16-23314933-3	chr16	23314438	23315438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	24468.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	157.31	153.44	136.89	172.05	136.69	120.57	182.72	195.0	109.29
Merged-chr11-16637877-3	chr11	16637366	16638366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114337.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	65.21	70.04	39.77	46.56	57.85	60.28	53.87	52.62	46.22
Merged-chr3-97933465-3	chr3	97932958	97933958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3285.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	136.15	137.31	65.67	171.38	147.42	131.02	171.1	172.0	78.07
Merged-chr16-4626717-3	chr16	4626214	4627214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030205)	TTS (NM_030205)	-1768.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	125.28	141.0	123.94	122.8	99.37	113.33	126.74	169.35	78.07
Merged-chr6-39004081-3	chr6	39003597	39004597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	CR1_Mam|LINE|CR1	63489.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	263.14	247.44	108.22	275.96	176.34	113.33	197.51	262.65	135.52
Merged-chr10-93175474-3	chr10	93174963	93175963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	L1MC3|LINE|L1	12678.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	81.8	88.47	62.9	112.68	88.64	77.97	125.69	134.42	78.07
Merged-chr13-63642759-2	chr13	63642272	63643272	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69312.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	4.0	0.0	2.77	2.7	2.33	2.41	12.67	10.17	3.75
Merged-chr7-12922227-3	chr7	12921736	12922736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-75.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	110.41	141.46	126.72	129.55	124.56	169.6	164.76	166.7	90.56
Merged-chr13-23698452-3	chr13	23697942	23698942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178208)	promoter-TSS (NM_178208)	16.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	124.14	132.25	95.27	119.43	74.64	115.75	108.79	114.52	84.31
Merged-chr10-68378339-3	chr10	68377850	68378850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-57208.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	34.9	38.71	28.67	51.95	32.19	45.01	34.85	45.99	24.98
Merged-chr10-34128657-3	chr10	34128163	34129163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-691.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	297.47	305.96	204.41	329.26	261.24	204.97	248.2	352.41	148.64
Merged-chr17-65630268-3	chr17	65629769	65630769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9487.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	121.85	79.72	77.7	101.88	67.64	94.04	102.45	122.92	78.69
Merged-chr11-97946081-3	chr11	97945600	97946600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 7 of 13)	MTD|LTR|ERVL-MaLR	40346.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	60.07	72.34	55.5	51.28	45.25	60.28	70.76	88.43	45.59
Merged-chr5-135689004-3	chr5	135688498	135689498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008898)	promoter-TSS (NM_008898)	-147.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	166.47	138.7	107.29	159.91	132.95	135.04	198.56	170.23	89.31
Merged-chr11-82023918-3	chr11	82023421	82024421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11656.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	93.82	72.34	60.12	95.14	76.97	48.23	73.93	59.25	54.96
Merged-chr4-115828498-3	chr4	115827999	115828999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	407.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	161.89	99.99	156.32	170.7	122.69	220.24	142.59	148.57	118.66
Merged-chr11-26387373-3	chr11	26386891	26387891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277273, intron 1 of 13)	CpG	307.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	97.82	109.67	82.32	68.82	45.72	44.21	126.74	118.5	76.82
Merged-chr11-69664022-3	chr11	69663503	69664503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291058)	TTS (NM_001291058)	960.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	327.79	244.22	229.39	314.42	259.38	234.71	311.57	334.28	180.49
Merged-chr3-67587626-3	chr3	67587130	67588130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025813, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	4862.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	11.44	6.91	11.1	14.84	11.2	4.82	8.45	9.73	6.25
Merged-chr6-100357151-3	chr6	100356643	100357643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-69785.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	10.3	5.07	7.4	12.14	8.86	7.23	5.28	9.29	7.49
Merged-chr14-122261444-3	chr14	122260954	122261954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-27816.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	19.45	20.27	17.57	14.17	16.33	22.51	20.07	20.78	16.24
Merged-chr1-183094966-3	chr1	183094453	183095453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278218, intron 8 of 8)	intron (NM_001278218, intron 8 of 8)	52604.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	28.03	27.65	12.02	25.64	23.33	22.51	27.46	41.12	17.49
Merged-chr8-46551920-3	chr8	46551428	46552428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027973)	promoter-TSS (NM_027973)	-141.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	100.11	121.65	75.85	134.27	139.49	111.73	143.64	152.55	81.19
Merged-chr2-160011515-3	chr2	160011001	160012001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5152.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	50.91	66.81	47.17	68.82	48.05	71.54	44.36	40.24	25.61
Merged-chr6-31176527-3	chr6	31176009	31177009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	41965.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	203.65	231.31	118.39	240.87	202.46	143.07	207.01	248.5	126.78
Merged-chr6-100671234-3	chr6	100670755	100671755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181590)	promoter-TSS (NM_181590)	-98.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	143.01	125.33	98.05	134.27	145.55	135.04	124.63	112.75	71.82
Merged-chr6-145359697-2	chr6	145359235	145360235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27890.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	105.26	101.83	56.42	102.56	99.83	83.59	1.06	1.77	0.0
Merged-chr8-94704146-3	chr8	94703620	94704620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7878.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	12.59	15.67	19.42	16.19	13.06	3.22	7.39	10.61	16.86
Merged-chr2-25333115-3	chr2	25332586	25333586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	343.0	NM_001029983	227619.0	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	105.26	85.25	50.87	126.85	87.24	78.77	83.44	107.45	29.98
Merged-chr17-74440700-3	chr17	74440207	74441207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 5 of 8)	intron (NM_001033367, intron 5 of 8)	18401.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	84.09	80.64	50.87	43.86	34.52	45.82	32.74	43.33	41.84
Merged-chr19-56773628-1	chr19	56773128	56774128	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	40055.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	90.38	71.88	53.65	144.39	85.84	122.18	81.33	101.7	75.57
Merged-chr4-46196256-3	chr4	46195744	46196744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011728)	promoter-TSS (NM_011728)	67.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	44.62	30.41	31.45	41.16	38.25	53.85	55.98	26.53	46.22
Merged-chr10-127605133-1	chr10	127604633	127605633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16015.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	298.04	182.01	145.22	288.78	175.87	180.05	179.55	183.5	116.79
Merged-chr2-25272443-3	chr2	25271942	25272942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023464)	promoter-TSS (NM_023464)	-24.0	NM_023464	68475.0	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	84.09	77.41	102.67	69.5	62.98	83.59	73.93	65.88	54.33
Merged-chr12-85980175-3	chr12	85979670	85980670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	98871.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	52.06	60.36	43.47	39.13	54.58	49.03	79.21	68.09	48.71
Merged-chr2-113327718-3	chr2	113327215	113328215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285458)	promoter-TSS (NM_001285458)	-21.0	NM_001285458	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	18.88	10.6	5.55	20.24	22.86	10.45	11.62	11.05	11.24
Merged-chr17-74867047-3	chr17	74866552	74867552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138477.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	50.91	44.7	10.17	58.03	35.92	11.25	84.49	69.86	28.1
Merged-chr15-43477137-3	chr15	43476633	43477633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	-96.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	132.14	157.13	96.2	127.52	161.88	113.33	135.19	150.78	73.07
Merged-chr3-81134937-3	chr3	81134447	81135447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357746, intron 2 of 6)	intron (NM_001357746, intron 2 of 6)	98531.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	9.15	7.37	7.4	27.66	11.2	14.47	15.84	8.84	13.12
Merged-chr15-101256232-3	chr15	101255728	101256728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10618.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	73.79	55.29	37.92	104.58	55.05	80.38	102.45	91.53	60.58
Merged-chr9-70842507-3	chr9	70841999	70842999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	MER20|DNA|hAT-Charlie	92309.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	107.55	96.3	69.37	104.58	70.44	90.02	91.89	107.89	67.45
Merged-chr12-73901300-3	chr12	73900786	73901786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313920)	promoter-TSS (NM_001313920)	-38.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	9.72	10.6	7.4	6.07	4.2	3.22	6.34	2.21	5.0
Merged-chr10-42225307-3	chr10	42224792	42225792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	51450.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	26.89	14.75	12.95	22.94	17.26	14.47	11.62	10.61	14.99
Merged-chr11-53763763-3	chr11	53763245	53764245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106131)	promoter-TSS (NR_106131)	-91.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	376.98	293.06	179.44	410.9	279.91	307.85	309.46	374.96	160.5
Merged-chr14-13981483-3	chr14	13980962	13981962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19610.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	21.74	21.66	11.1	20.92	10.26	16.08	20.07	13.71	20.61
Merged-chr15-63506091-1	chr15	63505591	63506591	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26483.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.72	8.75	3.7	5.4	7.93	4.02	9.51	6.19	5.62
Merged-chr9-106247886-3	chr9	106247374	106248374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291835)	promoter-TSS (NM_001291835)	80.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	86.95	83.86	74.0	118.75	82.57	71.54	128.85	85.78	52.46
Merged-chr17-86963168-3	chr17	86962664	86963664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	53.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	283.74	196.29	225.69	362.32	222.06	204.97	286.23	163.16	109.92
Merged-chr3-35754540-3	chr3	35754035	35755035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151627, intron 1 of 31)	CpG	472.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	69.22	47.46	49.95	68.15	41.99	46.62	83.44	43.33	31.85
Merged-chr1-171018861-3	chr1	171018367	171019367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144559)	promoter-TSS (NM_144559)	-59.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	116.7	125.79	121.17	154.51	118.03	110.92	171.1	203.4	114.91
Merged-chr5-25499660-3	chr5	25499127	25500127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-170.0	NR_030700	320965.0	Mm.32025	NR_030700		4831440E17Rik	-	RIKEN cDNA 4831440E17 gene	ncRNA	348.38	417.93	368.13	311.72	376.01	302.22	301.01	344.01	218.58
Merged-chr6-35177487-3	chr6	35177004	35178004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027513)	promoter-TSS (NM_027513)	-112.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	196.79	146.53	102.67	199.04	203.86	140.66	223.91	172.45	91.81
Merged-chr6-83914765-2	chr6	83914260	83915260	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008717, intron 1 of 26)	CpG	407.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	296.32	324.39	272.86	248.97	313.03	262.84	264.05	225.95	105.55
Merged-chr7-98309542-3	chr7	98309040	98310040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025408)	promoter-TSS (NM_025408)	2.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	223.67	163.12	209.96	184.2	129.69	151.11	136.25	134.42	86.81
Merged-chr10-78244731-3	chr10	78244234	78245234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081055)	promoter-TSS (NM_001081055)	-92.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	172.76	117.5	96.2	138.32	91.44	90.02	116.18	94.62	61.83
Merged-chr14-121352445-1	chr14	121351945	121352945	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	26785.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.43	6.45	5.55	5.4	2.33	9.65	5.28	5.31	3.75
Merged-chr11-107242819-1	chr11	107242319	107243319	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 6 of 9)	intron (NR_153311, intron 6 of 9)	-53438.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	20.02	10.14	12.02	18.89	12.13	24.11	20.07	5.31	13.12
Merged-chr1-135147843-1	chr1	135147343	135148343	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 1 of 6)	intron (NM_026823, intron 1 of 6)	1009.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	129.86	135.47	110.07	164.63	129.69	128.61	152.09	136.63	83.06
Merged-chr13-76130093-2	chr13	76129592	76130592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081352, intron 18 of 43)	intron (NM_001081352, intron 18 of 43)	31358.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	10.3	19.35	12.95	14.84	13.06	13.66	2.11	6.63	5.0
Merged-chr19-41483202-3	chr19	41482705	41483705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-42047.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	124.14	69.58	99.89	87.04	50.38	79.58	130.97	62.35	51.21
Merged-chr2-27327181-3	chr2	27326665	27327665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-79862.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	35.47	28.11	45.32	58.7	34.06	47.42	42.25	22.99	21.23
Merged-chr8-116627378-3	chr8	116626883	116627883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	Lx8|LINE|L1	105608.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	101.83	132.25	107.29	79.62	72.78	53.05	176.38	206.05	99.92
Merged-chr7-24611335-3	chr7	24610826	24611826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-2.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	17.16	21.66	19.42	16.87	11.66	28.94	28.52	15.03	15.61
Merged-chr18-14783961-3	chr18	14783448	14784448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100449, intron 1 of 14)	intron (NM_001100449, intron 1 of 14)	703.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	73.79	57.6	92.5	112.68	111.5	110.92	122.52	80.47	57.46
Merged-chr5-24685761-3	chr5	24685269	24686269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-46.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	172.19	126.72	197.94	289.45	176.81	225.06	302.07	273.26	162.38
Merged-chr7-24902992-3	chr7	24902495	24903495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	9.0	NM_001130151	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	69.79	72.8	87.87	70.85	98.43	167.19	109.84	119.83	96.8
Merged-chr11-78178004-3	chr11	78177491	78178491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	-158.0	NM_001291235	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	88.1	55.29	42.55	87.71	72.78	44.21	77.1	69.86	41.22
Merged-chr8-46140511-3	chr8	46140001	46141001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16355.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	137.29	165.42	104.52	143.71	125.49	99.67	173.21	204.28	113.66
Merged-chr2-60288802-3	chr2	60288305	60289305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4321.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	46.91	47.92	72.15	43.18	26.12	69.13	38.02	45.1	39.35
Merged-chr4-127043669-3	chr4	127043169	127044169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17485.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	146.45	129.48	111.92	102.56	49.92	78.77	193.28	135.75	92.43
Merged-chr2-43545896-3	chr2	43545407	43546407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-9418.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	22.88	6.45	6.47	6.07	6.06	6.43	4.22	5.75	5.62
Merged-chr18-36471730-3	chr18	36471243	36472243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-17248.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	229.97	224.86	147.99	286.75	224.39	135.04	211.24	236.12	84.31
Merged-chr17-27028619-3	chr17	27028108	27029108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007523)	promoter-TSS (NM_007523)	19.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	139.58	111.51	118.39	134.94	167.94	112.53	143.64	196.32	96.18
Merged-chr4-132353642-3	chr4	132353141	132354141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003270)	promoter-TSS (NR_003270)	45.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	175.05	231.77	160.94	207.81	229.06	195.32	242.92	266.63	111.17
Merged-chr4-130787711-3	chr4	130787180	130788180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	80.66	57.14	58.27	84.34	55.51	89.22	97.17	103.91	46.84
Merged-chr2-153558633-3	chr2	153558144	153559144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28673.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	38.33	21.2	30.52	50.6	10.73	12.86	78.16	52.18	23.11
Merged-chr16-25061867-1	chr16	25061367	25062367	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040374, intron 1 of 2)	intron (NR_040374, intron 1 of 2)	2228.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.0	5.53	11.1	8.1	11.66	5.63	10.56	0.44	7.49
Merged-chr8-119344438-3	chr8	119343960	119344960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024219)	promoter-TSS (NM_024219)	-78.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	44.05	71.88	57.35	57.35	53.18	53.85	82.38	52.18	39.35
Merged-chr7-25680712-3	chr7	25680210	25681210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-70.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	282.59	296.28	188.69	275.96	205.26	224.26	245.04	302.44	181.11
Merged-chr5-34170949-3	chr5	34170462	34171462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1436.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	51.48	75.11	61.05	51.28	37.32	90.83	107.73	94.62	74.32
Merged-chr4-155774606-3	chr4	155774112	155775112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	-51.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	5.15	2.76	0.0	2.7	2.8	6.43	4.22	1.33	1.87
Merged-chr11-75462495-3	chr11	75461989	75462989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030711, intron 1 of 2)	intron (NR_030711, intron 1 of 2)	950.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	195.07	144.69	120.24	175.43	138.55	154.33	145.75	160.51	89.31
Merged-chr10-85354523-1	chr10	85354023	85355023	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32291.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.86	1.38	3.7	1.35	6.06	8.04	70.76	73.4	43.72
Merged-chr6-140610319-3	chr6	140609829	140610829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12334.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	135.58	137.77	91.57	128.87	76.51	86.01	152.09	195.88	79.94
Merged-chr7-139388439-2	chr7	139387969	139388969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-640.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	307.76	250.67	221.99	241.55	191.27	158.35	284.11	268.84	134.27
Merged-chr2-140395338-3	chr2	140394826	140395826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013802)	promoter-TSS (NM_001013802)	-104.0	NM_001013802	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	1.14	0.46	5.55	4.05	4.2	1.61	1.06	0.88	2.5
Merged-chr17-85395701-3	chr17	85395206	85396206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028576, intron 6 of 10)	intron (NM_028576, intron 6 of 10)	222690.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.58	15.67	3.7	24.29	18.19	18.49	31.69	25.2	15.61
Merged-chr16-91601965-3	chr16	91601452	91602452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4272.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	61.78	37.32	18.5	51.95	43.85	29.74	69.71	56.6	23.73
Merged-chr12-69372561-3	chr12	69372056	69373056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007481, exon 2 of 2)	5' UTR (NM_007481, exon 2 of 2)	406.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	309.48	257.58	289.51	290.13	255.65	278.91	298.9	208.7	181.11
Merged-chr4_GL456216_random-16096-1	chr4_GL456216_random	15596	16596	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033326, exon 1 of 7)	5' UTR (NM_001033326, exon 1 of 7)	215.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	435.15	412.1	0.0
Merged-chr10-128549231-3	chr10	128548673	128549673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018860)	promoter-TSS (NM_018860)	-5.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	156.74	209.66	115.62	160.58	165.61	117.35	154.2	222.85	129.9
Merged-chr2-59184687-3	chr2	59184195	59185195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23845.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	292.89	316.56	117.47	350.85	260.31	195.32	330.59	410.33	164.25
Merged-chr15-76657009-3	chr15	76656520	76657520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276321)	promoter-TSS (NM_001276321)	-119.0	NM_001276321	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	60.64	41.93	40.7	67.47	40.12	48.23	61.26	39.35	26.85
Merged-chr13-41484175-1	chr13	41483675	41484675	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	3185.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.01	18.43	13.87	19.57	19.59	12.06	11.62	9.29	11.24
Merged-chr4-125116694-3	chr4	125116201	125117201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11180.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	177.34	167.73	148.92	154.51	133.42	183.26	157.37	162.28	86.18
Merged-chr1-13373473-3	chr1	13373012	13374012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	CpG	571.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	215.66	165.42	253.44	215.91	105.43	176.83	285.17	124.25	167.37
Merged-chr11-115699459-3	chr11	115698955	115699955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	79.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	177.34	137.31	112.84	184.2	102.17	160.76	170.05	180.4	106.17
Merged-chr7-19824334-3	chr7	19823830	19824830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	185.35	174.18	154.47	174.75	146.48	148.7	185.89	195.44	109.92
Merged-chr6-120454839-3	chr6	120454342	120455342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-8355.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	106.97	70.96	44.4	131.57	125.96	94.04	120.41	112.75	51.84
Merged-chr15-17603801-1	chr15	17603301	17604301	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	765826.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	7.44	0.92	2.77	5.4	4.67	3.22	1.06	5.75	6.25
Merged-chr18-60767165-5	chr18	60766646	60767646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7450.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	110.98	91.7	72.15	106.61	84.44	94.04	94.0	103.91	49.34
Merged-chr5-29839631-3	chr5	29839137	29840137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-103701.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	9.15	11.98	14.8	23.62	5.6	19.29	13.73	3.1	16.24
Merged-chr5-65991376-3	chr5	65990874	65991874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027961, intron 4 of 6)	ORR1B1|LTR|ERVL-MaLR	12911.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	25.17	19.35	22.2	29.01	20.99	28.94	71.82	39.8	24.36
Merged-chr9-32516894-3	chr9	32516443	32517443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	24509.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	120.13	97.23	83.25	110.65	61.58	61.89	81.33	61.46	33.72
Merged-chr17-84408931-3	chr17	84408429	84409429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 22 of 37)	intron (NM_183021, intron 22 of 37)	57279.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	8.58	5.07	3.7	2.7	7.93	4.82	4.22	7.96	8.74
Merged-chr6-145139986-3	chr6	145139463	145140463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-5512.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	34.32	32.72	37.0	49.25	34.06	34.56	35.91	33.6	23.73
Merged-chrX-95444966-3	chrX	95444448	95445448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175179)	promoter-TSS (NM_175179)	-108.0	NM_175179	72345.0	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	20.59	26.73	41.62	24.96	18.19	44.21	33.8	42.01	19.36
Merged-chr5-143113058-3	chr5	143112531	143113531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207110)	promoter-TSS (NM_207110)	-11.0	NM_001359851	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	132.72	92.16	123.02	114.7	56.91	76.36	106.67	49.52	59.33
Merged-chr5-105052306-3	chr5	105051804	105052804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029509, intron 1 of 9)	intron (NM_029509, intron 1 of 9)	1257.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	139.58	176.02	91.57	151.81	119.43	91.63	149.98	172.45	70.57
Merged-chr2-164460915-3	chr2	164460441	164461441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	-30.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	121.85	113.35	86.95	105.26	97.97	109.32	106.67	81.36	61.83
Merged-chr18-61401855-3	chr18	61401348	61402348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	9.15	7.83	3.7	7.42	6.06	4.82	5.28	5.31	2.5
Merged-chr17-46111008-3	chr17	46110509	46111509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026768)	promoter-TSS (NM_026768)	5.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	80.66	77.87	44.4	105.26	86.77	53.05	142.59	95.07	41.22
Merged-chr11-82015292-3	chr11	82014745	82015745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-20332.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	36.61	12.44	9.25	26.99	12.6	1.61	26.4	5.31	5.62
Merged-chr4-117126213-3	chr4	117125710	117126710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175030)	promoter-TSS (NM_175030)	-485.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	198.5	193.99	144.29	247.62	222.06	247.57	256.65	257.34	157.38
Merged-chr8-54529563-3	chr8	54529078	54530078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029701, intron 1 of 4)	CpG	420.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	161.32	135.01	127.64	153.84	132.02	166.38	127.8	135.3	55.58
Merged-chr9-22156790-3	chr9	22156310	22157310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082532)	promoter-TSS (NM_001082532)	-36.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	124.14	129.48	85.1	153.84	111.5	127.8	188.0	119.83	88.68
Merged-chr15-55072111-3	chr15	55071607	55072607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081288)	promoter-TSS (NM_001081288)	45.0	NM_001081288	319944.0	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	130.43	126.25	120.24	126.85	158.15	133.43	135.19	113.64	90.56
Merged-chr8-119426613-3	chr8	119426107	119427107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10555.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	67.5	60.36	73.07	66.12	66.71	100.47	97.17	85.34	28.73
Merged-chr13-23622507-3	chr13	23621996	23622996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015787)	promoter-TSS (NM_015787)	62.0	NM_015787	50709.0	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	131.57	185.7	155.39	119.43	153.01	184.07	160.54	234.79	187.98
Merged-chr5-86071751-3	chr5	86071235	86072235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019992)	promoter-TSS (NM_019992)	-11.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	56.06	71.42	24.05	27.66	20.99	35.37	61.26	58.81	43.72
Merged-chr11-95310346-3	chr11	95309852	95310852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195004)	promoter-TSS (NM_001195004)	-64.0	NR_155298	102640811.0	Mm.440938	NR_155298		Gm11520	-	predicted gene 11520	ncRNA	275.16	352.96	258.06	271.91	315.36	184.07	238.7	304.65	157.38
Merged-chr4-40948413-3	chr4	40947913	40948913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009736)	promoter-TSS (NM_009736)	-119.0	NM_001171739	12017.0	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	90.38	70.04	93.42	91.76	49.92	71.54	97.17	87.99	70.57
Merged-chr16-91855924-3	chr16	91855426	91856426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 23 of 28)	intron (NM_001110275, intron 23 of 28)	75704.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	30.89	34.1	24.05	48.58	32.19	27.33	57.03	45.54	23.11
Merged-chr17-94864832-3	chr17	94864313	94865313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024731)	promoter-TSS (NM_001024731)	-105.0	NM_001024731	100044193.0		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	34.32	22.58	34.22	36.43	37.79	40.19	54.92	41.12	21.86
Merged-chr1-39493283-3	chr1	39492786	39493786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14531.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	102.97	60.82	72.15	92.44	24.26	60.28	86.61	44.22	55.58
Merged-chr16-95990943-3	chr16	95990441	95991441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019537)	promoter-TSS (NM_019537)	19.0	NM_019537	56088.0	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	78.94	90.77	72.15	93.79	90.97	102.88	98.23	91.97	44.97
Merged-chr5-136116644-3	chr5	136116153	136117153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-38.0	NM_011293	20022.0	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	28.6	34.56	41.62	29.01	45.72	36.97	38.02	26.53	16.86
Merged-chr1-152904671-3	chr1	152904166	152905166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2020.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	233.97	228.55	88.8	178.13	186.14	135.84	192.23	259.99	75.57
Merged-chr17-35257572-3	chr17	35257075	35258075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5519.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	217.95	224.4	144.29	340.73	326.09	221.85	275.66	376.73	90.56
Merged-chr17-12921275-3	chr17	12920788	12921788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290712, intron 6 of 10)	intron (NM_001290712, intron 6 of 10)	-1569.0	NR_028479	100303746.0		NR_028479		Snora20	MBI-125	small nucleolar RNA, H/ACA box 20	snoRNA	22.88	44.24	23.12	33.74	24.72	32.15	24.29	22.99	14.36
Merged-chr1-7398070-3	chr1	7397557	7398557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	309137.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	49.77	66.81	62.9	73.54	50.85	68.32	65.48	68.54	47.46
Merged-chr15-96709847-3	chr15	96709359	96710359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10131.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	294.04	214.26	184.07	304.97	249.12	140.66	250.32	261.32	124.28
Merged-chr11-121741688-3	chr11	121741191	121742191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39264.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	177.91	160.35	89.72	216.58	174.01	163.97	128.85	143.7	77.44
Merged-chr6-49264038-3	chr6	49263546	49264546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347209)	promoter-TSS (NM_001347209)	6.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	443.34	517.0	305.23	397.41	479.1	323.12	367.55	437.3	241.07
Merged-chr5-105718464-3	chr5	105717955	105718955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	17645.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	163.04	168.19	87.87	145.74	140.42	122.18	96.11	101.26	79.94
Merged-chrUn_JH584304-50105-1	chrUn_JH584304	49605	50605	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9584.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	46.47	26.97	0.0
Merged-chr11-51584758-3	chr11	51584266	51585266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	9.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	409.59	439.13	281.19	368.4	422.66	318.3	329.53	347.54	198.6
Merged-chr6-83634220-3	chr6	83633719	83634719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21897.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	81.23	100.91	80.47	93.79	107.3	98.87	113.01	126.9	53.71
Merged-chr13-42258660-3	chr13	42258164	42259164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42812.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	99.54	105.06	47.17	96.48	77.91	70.73	88.72	81.36	47.46
Merged-chr5-101766473-3	chr5	101765978	101766978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1348.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	167.04	243.29	198.87	168.68	163.74	135.04	178.5	224.18	120.53
Merged-chr4-22357620-3	chr4	22357110	22358110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104378)	promoter-TSS (NR_104378)	67.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	131.0	133.63	121.17	151.14	134.82	145.49	128.85	141.05	88.68
Merged-chr19-24174179-2	chr19	24173703	24174703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-14.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	32.04	17.51	9.25	2.02	0.93	1.61	6.34	5.75	1.25
Merged-chr13-98819288-3	chr13	98818784	98819784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	76.66	103.68	81.4	77.59	73.24	66.71	117.24	118.5	50.59
Merged-chr17-46160925-3	chr17	46160413	46161413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-119.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	205.94	179.25	165.57	134.27	111.03	150.31	195.39	232.14	119.28
Merged-chr6-72097512-3	chr6	72097020	72098020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-88.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	167.61	123.03	113.77	171.38	133.42	143.88	202.79	219.76	76.82
Merged-chr1-185294815-3	chr1	185294326	185295326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198653, exon 18 of 23)	exon (NM_198653, exon 18 of 23)	-18493.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	38.9	29.95	10.17	62.75	73.24	45.01	49.64	60.58	18.11
Merged-chr14-16365046-3	chr14	16364520	16365520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-186.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	240.83	258.5	236.79	190.27	222.52	181.66	191.17	187.48	155.51
Merged-chr11-118156726-3	chr11	118156236	118157236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27517.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	102.4	103.68	84.17	194.32	160.95	124.59	114.07	129.55	85.56
Merged-chr13-51645118-3	chr13	51644603	51645603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025415)	promoter-TSS (NM_025415)	-129.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	161.89	183.39	135.97	144.39	135.75	164.78	188.0	194.11	153.63
Merged-chr2-71327303-3	chr2	71326798	71327798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	40256.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	171.04	197.22	114.69	228.05	171.68	164.78	224.97	301.56	155.51
Merged-chr6-87002863-3	chr6	87002308	87003308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-7028.0	NM_001170591	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	8.58	11.52	6.47	24.96	12.13	16.08	13.73	4.42	2.5
Merged-chr18-65800398-4	chr18	65799879	65800879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-199.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	269.44	284.76	189.62	277.31	232.79	206.57	259.82	273.26	129.28
Merged-chr5-105732191-3	chr5	105731680	105732680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	CpG	31370.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	132.14	91.7	22.2	158.56	99.37	59.48	84.49	54.39	17.49
Merged-chr15-101240937-3	chr15	101240460	101241460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15774.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	12.01	10.6	12.02	16.19	8.86	9.65	15.84	7.07	8.12
Merged-chr8-91112332-1	chr8	91111832	91112832	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302337, exon 10 of 10)	3' UTR (NM_001302337, exon 10 of 10)	21407.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	6.86	11.06	12.95	18.22	9.33	16.88	5.28	3.98	5.0
Merged-chr15-59615090-3	chr15	59614595	59615595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33559.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	163.04	127.18	109.14	175.43	128.76	144.68	116.18	135.3	102.42
Merged-chr11-120938971-3	chr11	120938449	120939449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6077.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	14.87	5.53	0.92	18.22	7.46	7.23	11.62	9.29	6.25
Merged-chr9-22225739-3	chr9	22225250	22226250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	38.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	148.73	133.63	123.02	126.85	116.63	90.02	192.23	179.96	86.18
Merged-chr4-56141783-1	chr4	56141283	56142283	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	599642.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	7.44	7.37	12.95	4.05	6.06	8.04	3.17	3.98	6.25
Merged-chr4-125127927-3	chr4	125127425	125128425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-44.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	403.87	318.86	221.99	342.08	343.35	262.04	342.2	336.49	192.98
Merged-chr2-166697488-3	chr2	166696988	166697988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	16344.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	203.08	146.07	136.89	164.63	79.77	90.83	223.91	210.03	96.18
Merged-chr8-60883645-3	chr8	60883162	60884162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-6731.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	16.02	20.27	2.77	10.12	20.06	24.11	7.39	14.59	16.24
Merged-chr9-64789498-3	chr9	64788997	64789997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21514.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	83.52	51.61	24.05	44.53	28.92	28.13	40.14	34.93	22.48
Merged-chr8-111992277-3	chr8	111991776	111992776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357186)	promoter-TSS (NM_001357186)	26.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	29.75	26.26	22.2	23.62	9.8	22.51	31.69	43.33	27.48
Merged-chr7-4653976-3	chr7	4653465	4654465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4985.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	201.93	204.59	161.87	151.14	118.03	123.78	195.39	185.71	93.05
Merged-chr11-55033453-3	chr11	55032966	55033966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110211)	promoter-TSS (NM_001110211)	5.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	85.24	58.52	30.52	61.4	88.64	48.23	54.92	56.6	44.34
Merged-chr16-23107869-1	chr16	23107369	23108369	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152586, intron 1 of 11)	CpG	401.0	NM_001347179	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	337.51	437.28	254.36	300.25	393.73	278.11	303.13	374.52	214.84
Merged-chr15-59511715-2	chr15	59511247	59512247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-136907.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	80.66	53.91	23.12	10.8	2.8	1.61	28.52	27.41	21.23
Merged-chr1-84218751-3	chr1	84218258	84219258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105771)	TTS (NR_105771)	203.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	32.61	34.56	30.52	27.66	21.93	33.76	24.29	29.63	21.23
Merged-chr11-8580012-3	chr11	8579505	8580505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	84530.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	158.46	152.06	133.19	194.32	199.67	141.47	132.02	131.77	81.19
Merged-chr14-76330189-3	chr14	76329701	76330701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78739.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	79.52	64.51	39.77	59.38	46.18	29.74	69.71	80.92	26.85
Merged-chr2-20899496-3	chr2	20898989	20899989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68232.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	80.09	122.11	45.32	70.17	96.1	63.5	92.94	84.01	24.36
Merged-chr2-118901369-3	chr2	118900868	118901868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045523)	promoter-TSS (NM_001045523)	-247.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	12.01	9.22	15.72	20.24	15.39	20.9	28.52	15.03	19.36
Merged-chr2-34784784-1	chr2	34784284	34785284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145522, intron 5 of 7)	intron (NM_145522, intron 5 of 7)	12694.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	12.59	3.69	5.55	4.72	1.4	3.22	9.51	1.33	1.25
Merged-chr6-57571811-3	chr6	57571331	57572331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-9161.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	26.89	27.65	24.97	20.24	17.26	17.68	25.35	21.67	32.48
Merged-chrX-134059153-3	chrX	134058632	134059632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290398)	promoter-TSS (NM_001290398)	-44.0	NM_001359054	108062.0	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	22.88	34.1	16.65	43.18	30.32	39.39	27.46	32.28	8.12
Merged-chr5-54045751-3	chr5	54045254	54046254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	47231.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	22.31	12.9	5.55	20.24	12.13	24.11	17.96	11.05	16.24
Merged-chr2-79635231-3	chr2	79634746	79635746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-179.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	243.12	249.75	253.44	248.97	229.99	203.36	223.91	206.05	127.4
Merged-chr10-51454597-3	chr10	51454107	51455107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-26005.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	267.15	311.03	161.87	286.75	212.26	212.2	254.54	396.18	154.88
Merged-chr4-134924596-3	chr4	134924124	134925124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023665, intron 2 of 4)	intron (NM_023665, intron 2 of 4)	999.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	189.92	229.01	147.99	165.31	168.41	134.23	175.33	194.11	121.16
Merged-chr1-58743535-3	chr1	58743052	58744052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	13000.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	224.25	246.06	133.19	261.79	222.52	188.09	251.37	237.89	134.27
Merged-chr17-62574775-3	chr17	62574311	62575311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	306506.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	22.88	30.41	15.72	36.43	30.79	40.19	52.81	41.12	24.98
Merged-chr8-35495572-3	chr8	35495059	35496059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-26.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	146.45	123.95	183.14	126.85	116.63	136.64	146.81	156.97	107.42
Merged-chr12-111484073-1	chr12	111483573	111484573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001033248)	TTS (NM_001033248)	1750.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	5.15	4.15	3.7	5.4	4.2	6.43	5.28	3.1	0.62
Merged-chr9-100545353-1	chr9	100544853	100545853	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	CpG	781.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	147.59	148.83	118.39	130.22	144.15	142.27	128.85	105.68	86.81
Merged-chr18-53255530-3	chr18	53255037	53256037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	9875.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	279.73	241.91	185.92	348.15	283.17	212.2	260.88	270.61	118.04
Merged-chr5-64211491-3	chr5	64210991	64211991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	RCHARR1|DNA|hAT-Charlie	-18866.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	139.01	162.2	120.24	203.76	217.39	179.24	204.9	235.68	129.28
Merged-chr9-65562321-3	chr9	65561821	65562821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	17766.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	99.54	87.09	85.1	126.17	80.71	107.71	88.72	87.99	58.08
Merged-chr5-124013070-3	chr5	124012573	124013573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16221.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	108.69	66.35	32.37	90.41	67.18	51.44	104.56	103.02	33.1
Merged-chr11-55204299-3	chr11	55203740	55204740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-100.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	81.23	88.93	49.02	81.64	106.83	81.99	98.23	81.36	30.6
Merged-chr16-22331112-3	chr16	22330615	22331615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36127.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	17.16	24.88	22.2	33.06	31.72	43.4	33.8	25.65	27.48
Merged-chr19-3931915-3	chr19	3931394	3932394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2178.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	127.57	141.92	133.19	112.68	100.3	107.71	143.64	179.52	87.43
Merged-chrX-103981373-3	chrX	103980862	103981862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358205)	promoter-TSS (NM_001358205)	-77.0	NM_011276	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	229.97	274.63	243.26	231.43	258.45	192.11	207.01	239.21	169.87
Merged-chr1-36948120-3	chr1	36947614	36948614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-8587.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	114.98	64.97	65.67	84.34	49.92	28.94	66.54	42.89	31.85
Merged-chr9-95750317-3	chr9	95749785	95750785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311123)	promoter-TSS (NM_001311123)	73.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	90.96	30.41	18.5	65.45	35.45	33.76	51.75	18.13	24.98
Merged-chr12-69583062-3	chr12	69582490	69583490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033236)	promoter-TSS (NM_001033236)	38.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	133.29	97.23	75.85	165.31	149.28	151.92	52.81	47.31	15.61
Merged-chr14-30593888-3	chr14	30593384	30594384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16426.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	279.16	335.45	240.49	344.11	312.56	238.73	255.6	338.7	202.35
Merged-chr1-131200223-3	chr1	131199709	131200709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311094)	promoter-TSS (NM_001311094)	-24.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	200.79	255.74	188.69	198.37	231.39	224.26	156.32	194.11	134.9
Merged-chr8-105880902-3	chr8	105880415	105881415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181594)	promoter-TSS (NM_181594)	34.0	NM_181594	234699.0	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	41.76	41.01	46.25	35.76	37.32	32.15	51.75	33.6	21.86
Merged-chr5-21411510-3	chr5	21411030	21412030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	13147.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	223.67	186.16	115.62	157.21	140.42	112.53	205.96	225.06	113.04
Merged-chr1-36557463-5	chr1	36556955	36557955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001304330, exon 1 of 16)	5' UTR (NM_001304330, exon 1 of 16)	102.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	180.77	201.82	264.54	149.79	128.76	242.74	189.06	184.38	136.15
Merged-chr13-98868734-2	chr13	98868235	98869235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	22307.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	50.34	61.28	31.45	60.72	48.52	57.87	22.18	15.48	18.11
Merged-chr10-96035248-3	chr10	96034755	96035755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 22 of 28)	MTEa|LTR|ERVL-MaLR	94592.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	31.46	28.57	14.8	33.06	26.59	14.47	29.57	13.71	17.49
Merged-chrX-163745356-1	chrX	163744856	163745856	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	15976.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	17.73	10.14	12.95	12.82	12.6	12.06	22.18	7.52	14.36
Merged-chr12-85992205-3	chr12	85991704	85992704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86837.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	200.22	164.5	79.55	208.49	193.6	123.78	155.26	206.05	85.56
Merged-chr14-103037265-3	chr14	103036753	103037753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	18.88	11.06	7.4	16.19	7.46	4.82	20.07	13.27	13.74
Merged-chr2-150789539-1	chr2	150789039	150790039	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2743.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	16.59	8.29	9.25	15.52	10.26	17.68	14.79	11.05	15.61
Merged-chr7-25386274-3	chr7	25385762	25386762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_073028)	TTS (NR_073028)	3850.0	NM_001039507	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	149.88	122.57	123.02	109.98	96.57	143.88	116.18	104.79	101.17
Merged-chr13-113616820-3	chr13	113616312	113617312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1752.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	286.6	386.6	297.84	312.39	345.68	292.58	315.8	392.64	249.19
Merged-chr13-60601901-3	chr13	60601385	60602385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285917)	promoter-TSS (NM_001285917)	-62.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	78.37	77.41	112.84	138.99	111.5	147.09	115.12	91.97	83.69
Merged-chr2-27563941-3	chr2	27563442	27564442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48795.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	28.6	24.88	3.7	33.06	11.66	24.92	16.9	15.92	14.36
Merged-chr4-149696874-3	chr4	149696372	149697372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	1836.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	57.78	39.17	34.22	64.77	27.06	49.03	69.71	86.22	71.2
Merged-chr1-136466294-3	chr1	136465796	136466796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1552.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	8.01	11.98	12.02	8.77	7.93	6.43	22.18	5.31	14.36
Merged-chr11-82035489-3	chr11	82035009	82036009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011333)	promoter-TSS (NM_011333)	-68.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	53.2	37.78	20.35	52.63	30.79	22.51	51.75	38.47	29.35
Merged-chr2-25332620-3	chr2	25332124	25333124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027448)	promoter-TSS (NR_027448)	-53.0	NR_027448	100272219.0	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	247.7	248.82	159.09	224.68	202.93	167.99	219.69	244.52	118.66
Merged-chr3-89847814-3	chr3	89847297	89848297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	MIR|SINE|MIR	16427.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	51.48	39.63	31.45	45.88	37.32	59.48	57.03	48.64	39.97
Merged-chr7-138389251-3	chr7	138388751	138389751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	8479.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	20.59	23.96	9.25	20.24	20.53	30.54	15.84	12.82	2.5
Merged-chr5-36484465-3	chr5	36483950	36484950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170454)	promoter-TSS (NM_001170454)	-138.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	17.16	23.5	20.35	14.17	10.26	11.25	5.28	8.4	5.62
Merged-chr8-11767635-3	chr8	11767135	11768135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017402, intron 1 of 19)	RMER15|LTR|ERVL	9305.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	16.02	16.59	35.15	11.47	18.19	20.9	21.12	24.32	24.36
Merged-chr1-127774053-3	chr1	127773568	127774568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	-14.0	NR_045298	100502745.0	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	277.45	251.13	197.94	219.28	238.85	172.01	226.02	236.56	166.12
Merged-chrX-166510534-3	chrX	166510013	166511013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007577)	promoter-TSS (NM_001007577)	-35.0	NM_001007577	245695.0	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	165.9	163.58	121.17	174.08	179.61	123.78	159.48	159.18	84.31
Merged-chr4-139199851-3	chr4	139199341	139200341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5730.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	251.7	278.77	232.16	271.24	217.86	206.57	257.71	322.34	155.51
Merged-chr5-65860839-3	chr5	65860314	65861314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2755.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	67.5	51.15	27.75	51.28	21.93	23.31	53.87	38.47	41.84
Merged-chr4-89295379-4	chr4	89294871	89295871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	191.0	NR_132431	102633081.0	Mm.409388	NR_132431		Gm12610	ANRIL|Gm12609	predicted gene 12610	ncRNA	61.21	58.98	43.47	68.15	69.04	66.71	55.98	58.37	44.97
Merged-chr15-25590177-1	chr15	25589677	25590677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-32373.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	36.61	44.7	26.82	2.02	1.87	1.61	2.11	2.65	2.5
Merged-chr15-93917141-3	chr15	93916641	93917641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045737, intron 2 of 3)	intron (NR_045737, intron 2 of 3)	9970.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	22.88	12.44	17.57	19.57	21.46	22.51	30.63	42.89	18.74
Merged-chr4-145258217-3	chr4	145257711	145258711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11341.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	77.23	88.93	69.37	65.45	60.65	80.38	85.55	65.0	43.09
Merged-chr5-123398036-3	chr5	123397520	123398520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	3222.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	107.55	104.14	105.44	78.94	56.91	90.02	103.51	113.64	71.82
Merged-chr8-57487131-3	chr8	57486631	57487631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126555)	promoter-TSS (NR_126555)	729.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	86.95	82.02	82.32	115.38	118.96	123.78	125.69	127.34	83.69
Merged-chr15-51952588-3	chr15	51952080	51953080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39180.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	69.79	53.91	54.57	60.05	62.51	55.46	122.52	113.19	39.35
Merged-chr17-34894354-3	chr17	34893865	34894865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198886)	promoter-TSS (NM_198886)	-194.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	85.24	52.53	74.0	88.39	57.38	93.24	91.89	64.56	43.09
Merged-chr11-60927466-3	chr11	60926972	60927972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	4395.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	30.89	15.67	16.65	7.42	2.33	15.27	5.28	7.52	4.37
Merged-chrX-36129583-3	chrX	36129118	36130118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	17510.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	83.52	98.15	43.47	60.05	52.25	52.25	55.98	55.71	61.83
Merged-chr2-125791571-3	chr2	125791020	125792020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8650.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	61.21	54.37	43.47	58.03	40.59	86.01	86.61	70.3	60.58
Merged-chr11-47063955-3	chr11	47063458	47064458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	253159.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	31.46	48.38	42.55	57.35	33.59	43.4	47.53	36.7	48.71
Merged-chr2-30205836-3	chr2	30205354	30206354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356474)	promoter-TSS (NM_001356474)	-7.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	104.11	77.41	54.57	99.18	91.44	61.89	101.39	74.28	56.21
Merged-chr7-120205759-2	chr7	120205241	120206241	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 1 of 30)	L1MB5|LINE|L1	1777.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	23.45	19.35	12.02	65.45	80.24	49.03	59.15	50.41	41.22
Merged-chrX-150925259-1	chrX	150924759	150925759	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	92034.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	8.01	1.38	3.7	4.05	1.4	7.23	3.17	1.77	2.5
Merged-chr16-38753661-3	chr16	38753155	38754155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 2 of 6)	(A)n|Simple_repeat|Simple_repeat	11396.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	39.47	40.09	51.8	35.09	37.32	58.68	53.87	70.75	27.48
Merged-chr13-3526467-3	chr13	3525958	3526958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11617.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	62.93	77.41	35.15	67.47	37.32	44.21	43.3	35.37	29.98
Merged-chr12-12172299-1	chr12	12171799	12172799	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89840.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.29	3.69	1.85	4.72	1.4	4.82	4.22	3.98	0.62
Merged-chr8-41239563-3	chr8	41239059	41240059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023662)	promoter-TSS (NM_023662)	-200.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	195.07	156.21	152.62	190.95	177.27	150.31	242.92	187.48	124.28
Merged-chr8-83652553-3	chr8	83652023	83653023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-155.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	67.5	60.36	58.27	89.74	54.58	60.28	67.6	59.25	44.97
Merged-chr8-119813186-3	chr8	119812689	119813689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	27390.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	149.31	100.91	95.27	136.97	92.84	111.73	142.59	142.38	70.57
Merged-chr7-79660122-3	chr7	79659630	79660630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029835)	promoter-TSS (NM_029835)	-66.0	NM_029835	77011.0	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	6.29	7.83	10.17	14.17	4.2	9.65	9.51	7.96	1.87
Merged-chr2-180126312-2	chr2	180125812	180126812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	6946.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	46.91	52.07	39.77	69.5	50.38	62.7	12.67	11.5	17.49
Merged-chr14-102748822-3	chr14	102748322	102749322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233810.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	17.16	11.98	1.85	12.82	12.13	6.43	10.56	10.61	7.49
Merged-chr13-21408566-3	chr13	21408086	21409086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5831.0	NM_023685	72739.0	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	77.8	71.88	37.92	67.47	76.97	57.07	50.7	59.25	28.73
Merged-chr8-126804268-3	chr8	126803768	126804768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44752.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	220.24	164.04	145.22	224.68	151.62	171.21	151.03	189.69	101.17
Merged-chr5-138262274-3	chr5	138261759	138262759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153161, exon 6 of 11)	exon (NM_153161, exon 6 of 11)	-1786.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	35.47	41.01	26.82	33.06	33.59	47.42	28.52	30.07	21.86
Merged-chr15-59051274-3	chr15	59050780	59051780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	L1M2|LINE|L1	30746.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	42.33	31.33	8.32	56.68	31.26	36.17	45.42	48.2	24.98
Merged-chr17-88256575-3	chr17	88256065	88257065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131053.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	11.44	17.51	5.55	23.62	24.26	22.51	33.8	14.15	18.74
Merged-chr9-108347805-3	chr9	108347307	108348307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311157)	promoter-TSS (NM_001311157)	-24.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	159.03	140.08	151.69	162.61	103.1	131.82	184.83	157.85	106.17
Merged-chr11-109247088-3	chr11	109246585	109247585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 12 of 16)	L1MB8|LINE|L1	51096.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	47.48	64.51	74.92	43.18	28.92	39.39	53.87	57.48	34.35
Merged-chr10-87832257-3	chr10	87831740	87832740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26025.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	97.25	127.18	72.15	135.62	104.5	114.14	146.81	239.21	91.18
Merged-chr3-95015614-3	chr3	95015113	95016113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030074)	promoter-TSS (NM_030074)	-156.0	NM_001357863	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	365.54	346.97	209.96	312.39	247.72	243.55	327.42	345.33	129.9
Merged-chr11-63026781-3	chr11	63026268	63027268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22634.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	25.17	17.97	12.95	58.03	34.52	28.13	48.58	41.56	11.87
Merged-chr15-59721755-3	chr15	59721269	59722269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73115.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	69.79	69.58	56.42	85.69	63.45	102.88	69.71	71.63	68.7
Merged-chr13-100833474-3	chr13	100832979	100833979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-52.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	273.44	264.03	174.82	250.99	265.91	216.22	214.41	252.92	180.49
Merged-chr11-67579310-3	chr11	67578787	67579787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-7213.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	9.15	11.06	3.7	15.52	10.26	5.63	30.63	17.69	8.12
Merged-chr13-54071966-6	chr13	54071483	54072483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027324, intron 1 of 10)	CpG	138.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	78.37	57.6	48.1	99.18	59.25	44.21	197.51	127.34	33.1
Merged-chrX-16619695-1	chrX	16619195	16620195	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173740)	promoter-TSS (NM_173740)	-3.0	NM_173740	17161.0	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	1.72	0.92	7.4	9.45	10.26	4.82	1.06	0.44	3.75
Merged-chr19-29940424-3	chr19	29939898	29940898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360725, intron 2 of 8)	intron (NM_001360725, intron 2 of 8)	-5392.0	NM_001164724	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	41.76	51.15	29.6	42.51	32.19	35.37	49.64	50.41	38.72
Merged-chr5-147896033-3	chr5	147895547	147896547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1232.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	65.79	73.73	67.52	53.3	42.45	57.07	66.54	88.88	74.32
Merged-chr4-151933626-3	chr4	151933112	151934112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172704)	promoter-TSS (NM_172704)	-108.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	114.98	58.52	67.52	105.26	55.05	74.75	125.69	39.35	53.08
Merged-chr17-35259249-3	chr17	35258730	35259730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3864.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	336.37	263.57	241.41	298.23	170.74	279.72	145.75	155.64	136.77
Merged-chr5-54060235-1	chr5	54059735	54060735	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	61712.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.0	8.29	14.8	7.42	11.2	3.22	10.56	3.54	13.74
Merged-chr9-45245088-2	chr9	45244567	45245567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21640.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	215.66	303.2	224.76	192.29	221.59	182.46	243.98	297.14	169.25
Merged-chr10-125317577-3	chr10	125317073	125318073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-8757.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	48.62	54.37	31.45	41.83	33.59	24.11	58.09	60.13	39.97
Merged-chr14-31423282-3	chr14	31422780	31423780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-5603.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	131.0	119.8	66.6	180.15	115.69	106.9	148.92	137.07	98.68
Merged-chr18-56707691-3	chr18	56707185	56708185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010721)	promoter-TSS (NM_010721)	-128.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	57.21	54.83	98.97	74.22	71.84	81.18	100.34	74.28	49.96
Merged-chr11-76179695-3	chr11	76179178	76180178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026664)	promoter-TSS (NM_026664)	-48.0	NM_026664	68299.0	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	23.45	15.67	41.62	22.27	26.12	24.11	30.63	22.99	22.48
Merged-chr12-110822555-3	chr12	110822049	110823049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 4 of 11)	intron (NM_011973, intron 4 of 11)	18390.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	47.48	57.14	49.95	70.85	67.64	54.66	67.6	61.02	38.72
Merged-chr14-57619660-3	chr14	57619163	57620163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020506, intron 6 of 22)	intron (NM_020506, intron 6 of 22)	45293.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	16.59	17.51	24.97	18.89	7.46	12.86	16.9	16.8	16.24
Merged-chr1-33670433-3	chr1	33669940	33670940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008922)	promoter-TSS (NM_008922)	616.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	46.34	70.96	38.85	76.24	106.36	88.42	49.64	61.46	50.59
Merged-chr3-89228300-3	chr3	89227812	89228812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013605)	promoter-TSS (NM_013605)	-744.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	25.17	19.81	11.1	20.24	12.6	15.27	25.35	15.48	11.87
Merged-chr15-89172701-3	chr15	89172200	89173200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1251.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	100.68	107.36	97.12	85.01	86.3	88.42	89.78	93.3	65.58
Merged-chr8-3221888-3	chr8	3221395	3222395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	57722.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	50.34	45.62	58.27	29.69	22.86	28.94	34.85	30.51	36.22
Merged-chr17-35218861-5	chr17	35218358	35219358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13507.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	85.24	82.94	91.57	90.41	61.11	63.5	114.07	103.91	76.19
Merged-chr2-166031222-3	chr2	166030728	166031728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	38591.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	104.11	95.38	121.17	98.51	64.84	65.91	122.52	143.26	48.71
Merged-chr9-108002533-3	chr9	108002030	108003030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-118.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	463.94	494.88	310.78	458.13	469.77	326.34	367.55	447.03	185.48
Merged-chr4-155187316-3	chr4	155186813	155187813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	35222.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	63.5	42.39	51.8	69.5	41.99	57.87	42.25	46.43	61.2
Merged-chr7-16387864-3	chr7	16387353	16388353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285892)	promoter-TSS (NM_001285892)	43.0	NM_001285892	56459.0	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	22.88	24.88	22.2	42.51	29.39	41.8	34.85	28.3	25.61
Merged-chr12-76393138-1	chr12	76392638	76393638	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11038.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	6.86	15.21	12.95	21.59	14.93	17.68	10.56	4.42	22.48
Merged-chr12-91849258-3	chr12	91848741	91849741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-84.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	140.15	132.71	61.05	118.75	123.62	86.01	114.07	105.24	54.33
Merged-chr7-35119228-3	chr7	35118745	35119745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287523)	promoter-TSS (NM_001287523)	-48.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	117.27	88.47	117.47	116.73	84.44	111.73	115.12	107.0	93.05
Merged-chr4-138304676-3	chr4	138304171	138305171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-67.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	42.33	35.02	17.57	29.69	10.73	28.94	36.97	35.82	18.74
Merged-chr2-11777614-3	chr2	11777094	11778094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348237)	promoter-TSS (NM_001348237)	-9.0	NM_001348236	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	101.25	94.46	100.82	130.22	112.43	118.96	132.02	145.92	94.93
Merged-chr18-82876412-3	chr18	82875907	82876907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20510.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	10.3	8.75	0.0	14.17	3.73	4.02	6.34	7.52	1.25
Merged-chr9-13828126-2	chr9	13827608	13828608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176836, intron 1 of 9)	CpG-14706	392.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	256.85	353.42	270.09	235.48	306.03	245.16	218.63	202.95	191.73
Merged-chr7-113614647-3	chr7	113614141	113615141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49654.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	13.73	12.9	14.8	19.57	20.06	12.06	13.73	14.15	3.75
Merged-chr1-185329269-3	chr1	185328731	185329731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198653, exon 1 of 23)	exon (NM_198653, exon 1 of 23)	170.0	NM_198653	381314.0	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	205.94	205.51	163.72	290.13	315.83	262.04	233.42	210.03	94.3
Merged-chr3-135402500-3	chr3	135401985	135402985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20948.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	8.58	2.3	7.4	10.8	5.13	11.25	7.39	5.31	8.74
Merged-chr3-95293810-3	chr3	95293320	95294320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133858, intron 7 of 9)	intron (NM_133858, intron 7 of 9)	10885.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	185.35	128.56	100.82	188.92	131.56	110.92	145.75	138.84	74.32
Merged-chr6-97806960-3	chr6	97806450	97807450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-108.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	85.81	114.27	84.17	105.93	90.04	92.44	125.69	133.53	59.95
Merged-chr17-86962556-3	chr17	86962056	86963056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145491)	promoter-TSS (NM_145491)	-555.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	167.04	141.92	140.59	203.09	181.01	122.18	146.81	130.88	78.69
Merged-chr3-7755732-3	chr3	7755269	7756269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-142009.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	9.15	7.83	3.7	12.82	7.93	9.65	11.62	5.31	7.49
Merged-chr2-128420634-3	chr2	128420152	128421152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	MER44B|DNA|TcMar-Tigger	8699.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	212.8	160.35	153.54	124.15	128.76	86.01	174.27	185.71	86.81
Merged-chr10-118083185-3	chr10	118082652	118083652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58635.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	237.4	166.8	110.07	238.85	149.75	146.29	190.11	194.55	69.95
Merged-chr12-40559302-3	chr12	40558808	40559808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	113255.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	207.08	190.3	112.84	201.07	157.21	107.71	196.45	197.65	118.04
Merged-chr17-33955750-3	chr17	33955288	33956288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	-12.0	NM_001357330	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	381.56	370.01	248.81	340.73	327.96	224.26	288.34	350.64	204.22
Merged-chr8-84907737-3	chr8	84907236	84908236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010062)	promoter-TSS (NM_010062)	-888.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	65.79	54.37	57.35	72.87	59.71	73.14	78.16	87.11	51.84
Merged-chr17-74528344-3	chr17	74527835	74528835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	40.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	335.22	264.03	201.64	251.67	239.32	218.63	226.02	210.47	161.75
Merged-chr12-111443857-2	chr12	111443343	111444343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1182.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	276.87	224.4	158.17	387.96	268.24	221.85	355.93	406.79	155.51
Merged-chr5-17854698-3	chr5	17854196	17855196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-4904.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	117.84	93.08	53.65	104.58	80.24	81.99	69.71	99.93	73.69
Merged-chr4-133130479-3	chr4	133130003	133131003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-130.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	166.47	164.5	185.92	182.85	143.68	183.26	219.69	202.95	129.28
Merged-chr5-102055170-3	chr5	102054654	102055654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	MLTR11B|LTR|ERVK	14767.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	151.59	138.7	97.12	153.84	113.36	139.06	196.45	226.83	113.04
Merged-chr11-60538058-3	chr11	60537546	60538546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172943, exon 1 of 4)	5' UTR (NM_172943, exon 1 of 4)	363.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	474.8	481.52	441.2	493.22	472.11	371.35	362.27	416.08	255.43
Merged-chr3-10288706-3	chr3	10288180	10289180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	RMER17D2|LTR|ERVK	12503.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	18.31	17.97	11.1	37.11	18.66	20.9	34.85	25.65	5.0
Merged-chr5-76183928-3	chr5	76183431	76184431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011626)	promoter-TSS (NM_011626)	51.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	135.58	129.94	124.87	126.85	90.97	123.78	136.25	87.11	64.33
Merged-chr12-76255237-3	chr12	76254733	76255733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138745)	promoter-TSS (NM_138745)	1.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	51.48	58.98	25.9	80.29	56.45	28.94	64.43	53.5	19.98
Merged-chr4-126137949-1	chr4	126137449	126138449	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028800, intron 10 of 10)	intron (NM_028800, intron 10 of 10)	-10054.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	8.58	4.15	7.4	4.72	6.06	15.27	6.34	0.44	5.0
Merged-chr11-58010421-3	chr11	58009944	58010944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	1380.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	188.78	217.95	168.34	153.16	168.88	153.52	258.77	265.3	143.64
Merged-chrUn_JH584304-37164-1	chrUn_JH584304	36664	37664	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	22525.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	164.76	115.41	0.0
Merged-chrX-117770527-3	chrX	117770030	117771030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-656697.0	NM_001142750	100039551.0	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	17.16	7.37	7.4	16.19	8.86	18.49	17.96	12.82	17.49
Merged-chr9-108049171-3	chr9	108048672	108049672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357682)	promoter-TSS (NM_001357682)	-92.0	NM_177910	331026.0	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	179.05	146.53	117.47	136.29	102.17	99.67	144.7	147.24	70.57
Merged-chr9-42264342-3	chr9	42263824	42264824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172769)	promoter-TSS (NM_172769)	-24.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	42.33	40.55	12.02	75.57	83.04	56.27	70.76	54.83	29.98
Merged-chr7-135914125-1	chr7	135913625	135914625	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197746.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	17.16	31.79	47.17	18.22	30.32	49.03	28.52	29.18	18.74
Merged-chr19-40247473-1	chr19	40246973	40247973	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016861, intron 3 of 6)	intron (NM_016861, intron 3 of 6)	24143.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	2.86	0.92	0.92	3.37	5.13	4.82	3.17	1.77	1.25
Merged-chrX-20658335-3	chrX	20657844	20658844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009457)	promoter-TSS (NM_009457)	42.0	NM_009457	22201.0	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	26.31	18.89	22.2	21.59	23.33	18.49	21.12	14.15	7.49
Merged-chr15-50840677-3	chr15	50840209	50841209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 2 of 5)	MIR|SINE|MIR	48340.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	24.6	24.88	15.72	45.88	25.66	28.13	28.52	24.32	24.36
Merged-chr8-72322621-3	chr8	72322139	72323139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008452)	TTS (NM_008452)	3577.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	161.32	113.35	68.45	135.62	82.57	83.59	86.61	114.08	88.06
Merged-chr7-100845624-3	chr7	100845124	100846124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177073)	TTS (NM_177073)	17789.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	61.78	58.52	37.0	60.72	39.19	49.83	38.02	31.39	33.72
Merged-chr9-88523030-3	chr9	88522515	88523515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040721)	promoter-TSS (NR_040721)	-118.0	NR_040721	72655.0	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	64.07	86.17	38.85	75.57	71.84	76.36	71.82	92.86	57.46
Merged-chr2-59343010-3	chr2	59342510	59343510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 16 of 20)	intron (NM_175464, intron 16 of 20)	43672.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	44.05	46.54	18.5	58.03	41.05	43.4	31.69	33.6	44.97
Merged-chr13-75820126-3	chr13	75819630	75820630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19755.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	9.72	4.15	3.7	16.87	6.53	8.04	8.45	3.98	6.25
Merged-chr2-79696153-3	chr2	79695645	79696645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11635.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	60.64	48.84	13.87	80.29	52.72	59.48	59.15	51.29	33.72
Merged-chr2-164074111-3	chr2	164073637	164074637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021420)	promoter-TSS (NM_021420)	-41.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	48.62	35.48	60.12	43.86	42.92	61.09	57.03	55.27	38.72
Merged-chr17-22081246-1	chr17	22080746	22081746	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	84731.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.0	1.84	5.55	1.35	3.27	8.04	7.39	11.05	9.99
Merged-chr6-17800937-3	chr6	17800436	17801436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51766.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	26.31	42.39	24.97	26.99	31.26	26.53	35.91	38.47	19.98
Merged-chr10-88731420-3	chr10	88730926	88731926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025859)	promoter-TSS (NM_025859)	12.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	237.97	260.34	165.57	242.22	242.12	204.16	207.01	229.04	134.9
Merged-chr13-95892108-3	chr13	95891628	95892628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027711)	promoter-TSS (NM_027711)	-206.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	149.88	129.94	91.57	210.51	176.34	165.58	196.45	185.71	113.66
Merged-chr2-52891309-3	chr2	52890825	52891825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MLT1F|LTR|ERVL-MaLR	33457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	32.04	26.26	35.15	41.16	35.45	33.76	24.29	24.76	15.61
Merged-chr4-148160120-3	chr4	148159606	148160606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-12.0	NR_104374	230903.0	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	42.9	41.47	29.6	75.57	43.85	49.83	66.54	34.05	26.23
Merged-chr13-95033188-3	chr13	95032671	95033671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172263, intron 16 of 19)	intron (NM_172263, intron 16 of 19)	56827.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	84.09	62.21	42.55	151.14	130.62	86.81	89.78	131.32	31.85
Merged-chr11-97782459-3	chr11	97781964	97782964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-25.0	NM_022891	65019.0	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	317.49	271.86	165.57	298.23	250.52	187.28	242.92	253.8	149.89
Merged-chr19-47224952-3	chr19	47224467	47225467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-3876.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	26.89	25.8	26.82	27.66	26.12	45.82	62.31	35.82	41.22
Merged-chr5-21424811-3	chr5	21424312	21425312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029195)	promoter-TSS (NM_029195)	-91.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	26.31	25.8	18.5	37.78	35.92	28.94	34.85	22.55	7.49
Merged-chr11-79214202-3	chr11	79213712	79214712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28812.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	33.75	20.27	19.42	39.13	23.33	25.72	25.35	19.46	11.24
Merged-chr14-61971625-3	chr14	61971129	61972129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289256.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	158.46	142.84	106.37	163.28	146.95	127.0	155.26	164.04	82.44
Merged-chr7-28709676-3	chr7	28709184	28710184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7098.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	19.45	24.42	20.35	14.84	13.06	17.68	23.24	18.57	26.85
Merged-chr19-47919277-3	chr19	47918789	47919789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	10.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	254.56	279.24	145.22	259.09	225.32	288.56	198.56	164.49	126.15
Merged-chr4-19894794-3	chr4	19894290	19895290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	L1MC3|LINE|L1	27776.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	206.51	279.24	147.07	269.21	285.5	194.52	247.15	300.67	125.53
Merged-chr14-79430466-3	chr14	79429973	79430973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001024135, exon 1 of 1)	3' UTR (NM_001024135, exon 1 of 1)	3962.0	NM_001024135	211255.0	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	42.33	51.61	41.62	42.51	39.19	36.97	52.81	47.75	40.59
Merged-chr2-131036926-1	chr2	131036426	131037426	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	3472.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	16.02	11.98	28.67	23.62	29.86	59.48	7.39	8.4	26.23
Merged-chr6-53287286-3	chr6	53286777	53287777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-26.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	29.75	21.2	20.35	45.21	24.72	8.84	17.96	15.48	2.5
Merged-chr16-76372377-3	chr16	76371893	76372893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	CpG	656.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	304.9	206.89	210.89	250.32	126.42	190.5	309.46	177.75	124.28
Merged-chr7-45923623-3	chr7	45923126	45924126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2200.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	117.27	107.36	124.87	102.56	72.31	152.72	134.14	120.27	96.18
Merged-chr18-35942317-3	chr18	35941827	35942827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22503.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	44.05	28.11	23.12	31.71	22.39	34.56	20.07	17.69	14.36
Merged-chr8-70539452-3	chr8	70538971	70539971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-204.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	350.1	258.5	187.77	317.12	264.04	250.78	280.95	304.21	157.38
Merged-chr5-121842843-3	chr5	121842338	121843338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5979.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	169.33	185.24	120.24	199.04	225.79	181.66	121.46	130.44	73.07
Merged-chr8-104442929-3	chr8	104442422	104443422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013380, exon 1 of 13)	5' UTR (NM_001013380, exon 1 of 13)	125.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	103.54	76.95	62.9	85.01	70.91	66.71	101.39	52.18	56.83
Merged-chr17-46383599-3	chr17	46383094	46384094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207671)	promoter-TSS (NM_207671)	-172.0	NM_207671	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	132.14	69.12	82.32	131.57	81.64	100.47	124.63	82.69	48.71
Merged-chr19-29512036-1	chr19	29511536	29512536	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015567, intron 2 of 3)	B4A|SINE|B4	9951.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	33.75	26.73	33.3	42.51	29.39	48.23	62.31	32.72	28.1
Merged-chr10-94148271-3	chr10	94147785	94148785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011629, intron 1 of 13)	CpG	354.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	225.39	193.07	192.39	206.46	177.74	135.84	241.87	198.98	133.65
Merged-chr3-36863046-3	chr3	36862521	36863521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-85.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	187.63	196.75	126.72	192.29	165.14	147.9	219.69	217.55	117.41
Merged-chr11-6366085-3	chr11	6365581	6366581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29044.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	12.01	3.69	5.55	13.49	6.53	8.04	8.45	3.98	5.0
Merged-chr4-46563970-3	chr4	46563446	46564446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	2494.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	195.64	162.66	132.27	192.97	155.81	140.66	139.42	148.13	81.19
Merged-chr4-102760215-3	chr4	102759708	102760708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	73.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	16.59	14.75	11.1	31.04	20.99	16.08	6.34	4.86	1.25
Merged-chr10-62582417-3	chr10	62581920	62582920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 15 of 15)	exon (NM_019553, exon 15 of 15)	-3963.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	71.51	83.86	61.97	91.09	68.58	88.42	101.39	100.37	58.08
Merged-chr16-18413212-3	chr16	18412718	18413718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	276.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	98.39	90.77	103.59	91.09	63.45	116.55	83.44	68.98	53.08
Merged-chr6-108448275-1	chr6	108447775	108448775	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41468.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	158.46	127.18	85.1	206.46	146.02	146.29	109.84	125.13	45.59
Merged-chr18-66437539-3	chr18	66437040	66438040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21064.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	86.38	77.41	54.57	100.53	79.77	43.4	99.28	123.36	44.97
Merged-chr11-116624294-3	chr11	116623795	116624795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167680)	promoter-TSS (NM_001167680)	-43.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	219.1	184.31	147.07	231.43	169.81	196.93	176.38	149.45	103.67
Merged-chr16-57216189-3	chr16	57215699	57216699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14728.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	199.07	193.07	129.49	175.43	139.49	138.25	180.61	232.14	98.68
Merged-chr3-126625313-3	chr3	126624833	126625833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28382.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	167.04	170.03	83.25	143.04	156.28	108.51	124.63	174.66	86.81
Merged-chr10-115385695-3	chr10	115385167	115386167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033261, exon 1 of 35)	exon (NM_001033261, exon 1 of 35)	708.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	409.02	372.77	287.66	330.61	345.22	296.6	289.39	315.71	272.92
Merged-chr6-135350359-1	chr6	135349859	135350859	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12572.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	6.29	0.92	1.85	39.81	20.99	16.88	5.28	4.42	3.75
Merged-chr3-75556990-3	chr3	75556500	75557500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-148.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	151.59	140.08	144.29	145.74	113.83	119.76	166.88	180.85	95.55
Merged-chr19-16038048-1	chr19	16037548	16038548	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52973.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	10.3	8.75	1.85	14.17	21.93	11.25	12.67	11.5	13.74
Merged-chr11-44437959-3	chr11	44437463	44438463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32585.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	36.04	29.49	22.2	45.21	41.99	42.6	115.12	99.93	43.09
Merged-chr4-126110748-3	chr4	126110316	126111316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6859.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	233.97	163.12	149.84	116.05	84.44	75.56	115.12	124.25	66.82
Merged-chr5-3802966-4	chr5	3802494	3803494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033173)	promoter-TSS (NR_033173)	130.0	NM_001289528	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	65.79	38.25	84.17	50.6	44.78	59.48	86.61	59.25	30.6
Merged-chr8-13674870-3	chr8	13674375	13675375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	2712.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	176.76	166.8	116.54	198.37	126.42	155.93	172.16	196.76	139.89
Merged-chr6-124829087-3	chr6	124828618	124829618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013700, intron 1 of 19)	intron (NM_013700, intron 1 of 19)	366.0	NM_001326594	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	105.83	64.05	50.87	66.12	41.52	57.87	83.44	78.71	45.59
Merged-chr10-99090069-3	chr10	99089582	99090582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17000.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	13.16	8.29	13.87	12.14	6.53	10.45	12.67	7.52	10.62
Merged-chr11-59809956-4	chr11	59809533	59810533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	6.0	NM_001271356	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	554.89	579.67	361.66	541.8	557.94	414.75	538.65	576.14	252.31
Merged-chr16-55747381-3	chr16	55746880	55747880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74758.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	58.92	102.75	62.9	72.19	61.58	57.87	62.31	98.16	64.33
Merged-chr4-136469789-3	chr4	136469294	136470294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	33.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	156.74	111.97	179.44	132.92	109.63	140.66	128.85	89.32	108.04
Merged-chrX-7605436-3	chrX	7604944	7605944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138603)	promoter-TSS (NM_138603)	-24.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	29.17	37.32	20.35	29.01	43.85	28.94	44.36	56.6	24.36
Merged-chr8-95434945-3	chr8	95434426	95435426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-57.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	74.94	74.65	64.75	78.27	80.24	50.64	98.23	67.65	34.97
Merged-chr11-23633131-1	chr11	23632631	23633631	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027860, intron 1 of 21)	intron (NM_027860, intron 1 of 21)	500.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	78.94	38.25	42.55	70.85	41.99	45.82	48.58	22.11	19.98
Merged-chr1-134071658-1	chr1	134071158	134072158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7497.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	3.43	2.3	1.85	2.7	1.87	6.43	3.17	0.0	6.87
Merged-chr10-75146207-3	chr10	75145713	75146713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65860.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	21.17	18.43	11.1	16.19	14.0	16.88	23.24	24.76	13.74
Merged-chr19-56743741-3	chr19	56743255	56744255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21383.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	197.36	205.97	119.32	224.68	222.06	158.35	164.76	224.62	126.78
Merged-chr11-69122776-3	chr11	69122243	69123243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033041, exon 4 of 4)	exon (NM_033041, exon 4 of 4)	2290.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	42.9	42.85	57.35	55.33	25.19	29.74	60.2	54.39	48.09
Merged-chr6-145276423-3	chr6	145275908	145276908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25856.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	255.71	244.22	132.27	291.48	234.65	156.74	180.61	197.21	96.8
Merged-chr11-17005089-3	chr11	17004591	17005591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	RSINE1|SINE|B4	3627.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	297.47	283.84	88.8	264.49	238.39	204.97	194.34	295.37	129.28
Merged-chr17-73948294-3	chr17	73947806	73948806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1890.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	182.49	147.91	117.47	195.67	142.75	121.37	193.28	235.23	121.78
Merged-chr1-171390305-3	chr1	171389788	171390788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005508, intron 1 of 11)	intron (NM_001005508, intron 1 of 11)	1328.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	276.87	246.98	148.92	200.39	150.22	179.24	211.24	228.6	150.51
Merged-chr4-53122046-3	chr4	53121565	53122565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	37830.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	155.6	130.4	87.87	192.97	106.83	127.8	186.94	166.25	102.42
Merged-chr10-41810257-6	chr10	41809746	41810746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-328.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	181.34	215.19	211.81	196.34	223.46	257.21	195.39	198.98	131.15
Merged-chr4-151842808-3	chr4	151842324	151843324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	18944.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	88.1	109.67	53.65	58.7	77.44	70.73	74.99	61.02	65.58
Merged-chr14-62347357-3	chr14	62346860	62347860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 2 of 10)	intron (NM_026001, intron 2 of 10)	15292.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	84.09	73.73	52.72	74.89	54.58	80.38	81.33	88.88	32.48
Merged-chr8-126584427-5	chr8	126583944	126584944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	225.39	164.04	118.39	311.72	192.67	175.23	158.43	174.21	74.32
Merged-chr5-92118052-3	chr5	92117571	92118571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	19654.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	9.15	4.15	3.7	3.37	7.0	6.43	10.56	3.98	3.12
Merged-chr19-17176891-3	chr19	17176398	17177398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 10 of 19)	A-rich|Low_complexity|Low_complexity	162607.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	115.55	121.19	80.47	123.47	95.17	99.67	136.25	187.92	83.06
Merged-chr7-144937665-3	chr7	144937170	144938170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 2 of 4)	intron (NM_007631, intron 2 of 4)	2255.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	29.75	22.12	24.97	25.64	20.99	44.21	20.07	28.74	9.99
Merged-chr4-58553306-3	chr4	58552819	58553819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172989)	promoter-TSS (NM_172989)	-26.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	32.04	29.49	22.2	29.01	14.0	12.06	47.53	15.92	5.0
Merged-chr9-56928352-3	chr9	56927797	56928797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175483)	promoter-TSS (NM_175483)	74.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	56.63	62.67	45.32	53.98	59.25	63.5	28.52	13.27	19.98
Merged-chr6-112696665-3	chr6	112696165	112697165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021385)	promoter-TSS (NM_021385)	5.0	NM_021385	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	292.89	233.62	55.5	280.01	268.71	116.55	254.54	206.05	70.57
Merged-chr7-31151078-3	chr7	31150581	31151581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	90.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	362.11	366.32	355.18	324.54	311.16	305.44	400.29	355.5	231.7
Merged-chr5-145280473-3	chr5	145279964	145280964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2879.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	108.12	185.24	139.67	132.24	179.14	151.92	136.25	128.23	106.17
Merged-chr17-56673236-3	chr17	56672730	56673730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027933)	promoter-TSS (NM_027933)	5.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	177.91	120.26	86.95	172.05	130.62	90.83	184.83	148.57	70.57
Merged-chrX-166230997-3	chrX	166230491	166231491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7952.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	14.3	1.84	7.4	10.12	5.13	1.61	8.45	3.98	6.25
Merged-chr10-80434098-3	chr10	80433597	80434597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	-444.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	132.14	88.01	73.07	84.34	55.05	60.28	132.02	82.69	76.19
Merged-chr16-91613170-3	chr16	91612665	91613665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	5834.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	113.84	79.72	60.12	110.65	63.45	88.42	181.66	159.62	98.05
Merged-chr7-92837370-3	chr7	92836857	92837857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029494)	TTS (NM_029494)	36890.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	18.31	11.52	3.7	18.22	7.46	14.47	3.17	7.52	7.49
Merged-chr8-86746148-3	chr8	86745653	86746653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009172)	promoter-TSS (NM_009172)	-147.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	82.95	39.63	58.27	97.83	42.45	75.56	109.84	26.97	38.72
Merged-chr4-129789726-3	chr4	129789249	129790249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30730.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	141.87	123.49	103.59	152.49	94.7	111.73	143.64	225.51	107.42
Merged-chr2-168955516-3	chr2	168955020	168956020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	67.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	96.68	99.53	77.7	155.19	170.74	116.55	129.91	99.93	64.33
Merged-chr4-126058525-3	chr4	126058030	126059030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-35.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	10.3	11.52	11.1	16.87	10.73	13.66	25.35	28.74	9.37
Merged-chr4-3712198-3	chr4	3711726	3712726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2738.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	161.89	138.7	114.69	128.87	73.24	107.71	111.96	124.69	85.56
Merged-chr10-39899187-3	chr10	39898674	39899674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033628)	promoter-TSS (NR_033628)	64.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	43.48	46.54	25.9	70.85	57.38	54.66	70.76	34.05	32.48
Merged-chr5-74705308-1	chr5	74704808	74705808	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2405.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.0	5.99	2.77	70.17	62.51	90.83	4.22	4.42	1.87
Merged-chr2-169928143-3	chr2	169927645	169928645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35042.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	94.39	99.99	64.75	94.46	64.38	63.5	127.8	128.67	78.07
Merged-chr10-57745638-3	chr10	57745149	57746149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39274.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	127.0	151.14	61.05	180.82	138.09	151.11	114.07	163.16	95.55
Merged-chr2-158167842-3	chr2	158167345	158168345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21453.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	204.8	162.2	137.82	224.68	155.35	151.92	198.56	261.76	132.4
Merged-chr16-29772780-3	chr16	29772277	29773277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	193443.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	8.58	8.29	9.25	10.8	11.2	8.04	6.34	9.29	12.49
Merged-chr4-154160780-3	chr4	154160295	154161295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026388)	promoter-TSS (NM_026388)	-111.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	56.06	36.4	78.62	85.69	33.59	103.69	92.94	50.41	39.35
Merged-chr4-102608291-3	chr4	102607788	102608788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18445.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	76.08	114.27	61.05	85.01	67.18	77.97	42.25	39.8	44.97
Merged-chr8-72320312-3	chr8	72319801	72320801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008452, intron 2 of 2)	PB1D7|SINE|Alu	1239.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	121.85	139.16	151.69	163.28	89.57	85.2	147.87	138.84	141.14
Merged-chr6-140767477-3	chr6	140766979	140767979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140594.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	103.54	143.76	82.32	119.43	111.03	111.73	162.65	194.11	81.81
Merged-chr8-117055325-3	chr8	117054840	117055840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 13 of 42)	MIR|SINE|MIR	27109.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	98.39	89.85	111.92	122.12	78.37	106.1	145.75	141.49	72.45
Merged-chr13-28617654-3	chr13	28617159	28618159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	93214.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	196.79	215.19	128.57	192.97	215.99	213.81	183.78	239.65	98.05
Merged-chr2-164859833-3	chr2	164859332	164860332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2124.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	83.52	69.12	87.87	99.86	60.65	102.88	97.17	70.75	59.33
Merged-chr13-113437765-3	chr13	113437241	113438241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65103.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	109.83	79.25	59.2	47.23	26.59	13.66	39.08	24.32	33.1
Merged-chr17-35051883-3	chr17	35051364	35052364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1621.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	169.9	162.66	108.22	155.19	123.16	141.47	218.63	261.76	139.27
Merged-chr15-80582729-3	chr15	80582252	80583252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289442, intron 1 of 7)	L3|LINE|CR1	10155.0	NM_001289442	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	46.34	32.72	22.2	39.13	45.72	35.37	50.7	39.8	17.49
Merged-chr5-97355339-3	chr5	97354851	97355851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	36979.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	9.72	7.83	8.32	10.12	4.2	10.45	8.45	5.31	16.24
Merged-chr16-19979984-3	chr16	19979500	19980500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	3049.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	31.46	31.33	29.6	18.89	22.39	39.39	39.08	40.24	24.36
Merged-chr16-14352804-3	chr16	14352306	14353306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8752.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	101.25	99.99	107.29	93.79	77.44	71.54	109.84	138.4	86.81
Merged-chr15-58250186-3	chr15	58249674	58250674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-35282.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	133.29	109.21	49.95	128.87	75.57	85.2	102.45	141.49	53.71
Merged-chr1-160906321-3	chr1	160905838	160906838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024952)	promoter-TSS (NM_001024952)	-73.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	144.16	135.47	105.44	168.68	155.35	118.16	164.76	101.26	86.18
Merged-chr15-96562772-3	chr15	96562271	96563271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	79191.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	12.01	6.91	11.1	14.17	7.46	11.25	14.79	18.57	13.74
Merged-chr7-28339603-4	chr7	28339126	28340126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013676)	promoter-TSS (NM_013676)	-907.0	NM_013676	20924.0	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	203.08	198.6	137.82	166.66	113.83	116.55	170.05	200.3	108.04
Merged-chrX-47912566-3	chrX	47912131	47913131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177215, exon 1 of 24)	5' UTR (NM_177215, exon 1 of 24)	175.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	104.69	106.44	64.75	99.86	75.11	85.2	100.34	72.07	59.33
Merged-chrX-143352980-3	chrX	143352469	143353469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 4 of 11)	intron (NM_001358592, intron 4 of 11)	41293.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	21.74	23.04	9.25	20.92	17.26	12.86	34.85	34.49	18.11
Merged-chr11-40733970-3	chr11	40733454	40734454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	293.0	NM_001290697	52653.0	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	60.64	82.02	50.87	68.15	76.04	75.56	88.72	106.12	57.46
Merged-chr3-18319649-3	chr3	18319159	18320159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76321.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	13.73	25.34	29.6	14.17	7.46	19.29	23.24	16.36	19.98
Merged-chr9-111552048-3	chr9	111551532	111552532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112951.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	42.33	26.26	28.67	45.21	13.06	16.08	27.46	21.67	16.86
Merged-chr12-85280393-3	chr12	85279903	85280903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025421)	promoter-TSS (NM_025421)	32.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	213.95	173.72	119.32	211.19	181.01	117.35	151.03	174.66	61.83
Merged-chr11-98785910-3	chr11	98785421	98786421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	234.54	175.56	156.32	172.73	120.36	142.27	180.61	254.25	146.14
Merged-chr19-45060379-3	chr19	45059882	45060882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25A|LTR|ERVK	12806.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	16.59	18.43	20.35	36.43	20.06	37.78	29.57	13.27	13.74
Merged-chr17-43058819-3	chr17	43058302	43059302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	MTD|LTR|ERVL-MaLR	42247.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	365.54	368.17	186.84	327.24	310.23	229.08	186.94	187.92	105.55
Merged-chr7-45466798-3	chr7	45466280	45467280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007527, exon 1 of 6)	5' UTR (NM_007527, exon 1 of 6)	118.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	84.66	79.72	85.1	120.77	118.96	129.41	124.63	88.88	66.82
Merged-chr9-103230426-3	chr9	103229929	103230929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133977)	promoter-TSS (NM_133977)	-143.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	131.57	123.95	110.07	150.46	153.48	151.92	137.3	103.47	82.44
Merged-chr6-124415137-3	chr6	124414650	124415650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	-83.0	NM_175933	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	129.86	159.43	111.92	107.95	111.03	96.45	181.66	133.09	75.57
Merged-chr10-81384314-3	chr10	81383807	81384807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-121.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	235.11	188.92	139.67	234.8	212.26	163.97	218.63	280.78	88.68
Merged-chr15-5143774-4	chr15	5143283	5144283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355640)	promoter-TSS (NM_001355640)	-78.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	30.32	24.42	28.67	29.69	20.53	30.54	29.57	22.99	24.98
Merged-chr18-36771434-2	chr18	36770945	36771945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008214, intron 5 of 12)	intron (NM_008214, intron 5 of 12)	-5231.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	30.89	25.34	35.15	50.6	21.46	34.56	1.06	1.77	0.0
Merged-chr7-100227457-3	chr7	100226985	100227985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027629)	promoter-TSS (NM_027629)	-122.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	141.3	88.47	98.05	166.66	107.76	135.84	124.63	103.47	82.44
Merged-chr17-83709743-3	chr17	83709271	83710271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 2 of 16)	intron (NM_054082, intron 2 of 16)	3608.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	109.83	133.17	95.27	112.68	97.5	108.51	91.89	142.82	78.07
Merged-chr14-19950978-3	chr14	19950476	19951476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285909, intron 3 of 5)	intron (NM_001285909, intron 3 of 5)	25717.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	106.4	110.59	70.3	133.59	95.17	43.4	74.99	67.21	41.84
Merged-chr6-37427339-3	chr6	37426834	37427834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	14814.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	71.51	67.27	40.7	66.12	53.18	33.76	51.75	60.58	51.84
Merged-chr4-141147901-3	chr4	141147390	141148390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172518)	promoter-TSS (NM_172518)	-32.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	373.55	300.89	247.89	309.02	300.43	278.11	282.0	318.36	204.22
Merged-chr7-118740688-3	chr7	118740187	118741187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027815, exon 1 of 31)	exon (NM_027815, exon 1 of 31)	416.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	169.33	165.42	110.07	153.84	145.08	128.61	194.34	151.22	134.27
Merged-chr11-83533434-3	chr11	83532924	83533924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2906.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	77.8	63.59	37.0	93.11	50.38	37.78	73.93	73.4	30.6
Merged-chr2-166745983-3	chr2	166745482	166746482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32150.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	43.48	31.33	49.95	36.43	29.39	41.8	78.16	54.83	39.35
Merged-chr4-116221543-1	chr4	116221043	116222043	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	-65.0	NM_001355584	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	107.55	97.69	81.4	106.61	93.3	105.3	162.65	158.3	74.32
Merged-chr19-4304405-3	chr19	4303907	4304907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	1815.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	28.6	40.55	27.75	39.13	37.79	58.68	51.75	53.94	29.98
Merged-chr7-141435315-3	chr7	141434820	141435820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177576)	promoter-TSS (NM_001177576)	55.0	NM_001360723	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	60.07	36.86	55.5	45.88	39.19	50.64	74.99	71.19	31.23
Merged-chr16-91841092-3	chr16	91840517	91841517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	90613.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	377.56	247.44	184.07	445.99	244.45	230.69	317.91	374.52	136.77
Merged-chr6-87500006-3	chr6	87499508	87500508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-3681.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	149.31	101.83	87.87	159.91	111.5	96.45	117.24	141.05	103.05
Merged-chr19-44284276-3	chr19	44283778	44284778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9398.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	86.95	76.49	42.55	106.61	58.78	58.68	107.73	99.93	39.97
Merged-chr16-91415706-4	chr16	91415233	91416233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	9498.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	257.42	215.65	99.89	283.38	218.33	163.17	212.29	275.03	129.9
Merged-chr18-25883554-3	chr18	25883052	25884052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129395.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	22.31	26.73	12.02	20.92	24.26	32.96	25.35	17.24	10.62
Merged-chr19-11045186-3	chr19	11044729	11045729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	5337.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	36.04	37.32	49.95	42.51	28.46	31.35	27.46	19.46	38.72
Merged-chr13-38204892-3	chr13	38204411	38205411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	-28.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	40.62	39.63	40.7	48.58	50.85	47.42	40.14	26.97	20.61
Merged-chrX-152001837-3	chrX	152001339	152002339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016763)	promoter-TSS (NM_016763)	-57.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	32.04	31.33	21.27	47.23	43.39	39.39	50.7	67.65	22.48
Merged-chr13-97241101-3	chr13	97240578	97241578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-27.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	78.37	74.19	55.5	42.51	41.52	44.21	44.36	46.43	49.34
Merged-chr3-107333636-3	chr3	107333129	107334129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-340.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	380.42	505.02	261.76	404.16	438.05	263.64	377.06	520.87	136.77
Merged-chr7-142442811-3	chr7	142442274	142443274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009405, intron 1 of 5)	intron (NM_009405, intron 1 of 5)	306.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	88.1	84.32	57.35	35.09	25.66	36.17	83.44	68.98	79.32
Merged-chr7-67951012-3	chr7	67950505	67951505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1252.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	16.02	11.06	11.1	16.19	18.66	16.88	8.45	8.84	8.74
Merged-chr17-37270236-3	chr17	37269819	37270819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013819)	promoter-TSS (NM_013819)	85.0	NM_013819	14991.0	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	452.49	478.75	283.96	368.4	373.67	273.29	445.71	551.82	236.07
Merged-chr11-117334270-3	chr11	117333761	117334761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	1948.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	125.85	120.73	96.2	98.51	91.9	118.96	94.0	87.11	64.95
Merged-chr11-121706617-3	chr11	121706124	121707124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4197.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	120.7	113.35	52.72	116.05	88.64	53.85	78.16	78.26	41.22
Merged-chr6-87394059-3	chr6	87393559	87394559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-5124.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	12.59	4.61	7.4	6.07	2.8	5.63	8.45	4.42	5.0
Merged-chr16-24626334-3	chr16	24625826	24626826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-95529.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	207.08	183.85	74.0	216.58	179.14	130.21	174.27	213.12	97.43
Merged-chr9-99229596-3	chr9	99229086	99230086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001244762, exon 5 of 5)	exon (NM_001244762, exon 5 of 5)	7653.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	46.91	52.53	35.15	57.35	47.12	31.35	34.85	46.43	23.73
Merged-chr8-88300451-3	chr8	88299976	88300976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	6272.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	46.34	45.62	74.92	39.13	42.92	73.14	48.58	42.89	48.09
Merged-chr13-101867050-3	chr13	101866568	101867568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98851.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	37.18	33.18	30.52	24.29	16.79	19.29	35.91	27.41	20.61
Merged-chr15-25984306-3	chr15	25983793	25984793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144523)	promoter-TSS (NM_144523)	-73.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	243.12	201.36	228.46	243.57	193.6	207.38	197.51	134.86	119.28
Merged-chr12-102173862-1	chr12	102173362	102174362	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	45135.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	12.01	2.3	16.65	25.64	14.46	36.17	11.62	3.54	9.99
Merged-chr1-181150956-3	chr1	181150434	181151434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030131)	promoter-TSS (NM_030131)	3.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	78.94	35.02	35.15	43.86	37.32	25.72	54.92	26.97	15.61
Merged-chr3-28032011-4	chr3	28031432	28032432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 6 of 25)	intron (NM_008875, intron 6 of 25)	47761.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	58.35	45.16	64.75	73.54	52.72	73.95	89.78	75.17	52.46
Merged-chr2-173528740-3	chr2	173528246	173529246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028158)	TTS (NM_028158)	6154.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	28.03	23.5	24.97	33.06	24.26	27.33	29.57	42.45	32.48
Merged-chr17-28257061-3	chr17	28256525	28257525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-14683.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	56.06	27.19	19.42	68.15	28.46	25.72	62.31	36.7	28.1
Merged-chr13-9173607-3	chr13	9173104	9174104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	79723.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	36.04	23.96	18.5	27.66	17.73	24.11	23.24	25.65	17.49
Merged-chr19-24999460-3	chr19	24998966	24999966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028785)	promoter-TSS (NM_028785)	-63.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	134.43	142.38	141.52	160.58	106.83	155.93	165.82	108.77	96.18
Merged-chr5-68049764-3	chr5	68049258	68050258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17923.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	10.3	9.68	7.4	2.7	4.67	5.63	6.34	5.31	2.5
Merged-chr10-68723272-3	chr10	68722796	68723796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177794)	promoter-TSS (NM_177794)	-450.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	129.86	93.54	78.62	115.38	120.36	81.18	176.38	191.9	66.82
Merged-chr5-138264009-3	chr5	138263517	138264517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153161)	promoter-TSS (NM_153161)	-28.0	NR_045821	69004.0	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	116.13	140.54	127.64	89.06	118.49	137.45	134.14	151.22	98.05
Merged-chr6-34869668-3	chr6	34869165	34870165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	6519.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	229.97	244.22	140.59	259.77	208.06	185.68	171.1	209.15	131.78
Merged-chr14-60444370-3	chr14	60443879	60444879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	66093.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	21.74	41.47	49.02	29.01	34.06	42.6	60.2	43.33	40.59
Merged-chr6-72396135-3	chr6	72395619	72396619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5452.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	77.23	82.94	78.62	71.52	50.38	53.85	77.1	99.49	72.45
Merged-chr6-124903802-3	chr6	124903299	124904299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008479)	TTS (NM_008479)	7906.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	154.45	61.75	61.05	114.03	59.71	90.02	104.56	92.86	51.21
Merged-chr6-108710122-3	chr6	108709621	108710621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49187.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	14.3	7.37	1.85	7.42	5.13	0.0	13.73	14.59	0.0
Merged-chr11-69097121-3	chr11	69096600	69097600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1849.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	363.25	227.17	160.02	322.51	200.13	215.42	223.91	206.93	142.39
Merged-chr5-23434421-4	chr5	23433940	23434940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026984)	promoter-TSS (NM_026984)	11.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	490.82	534.97	408.83	449.36	404.0	361.7	433.04	475.33	315.39
Merged-chr2-121457110-3	chr2	121456609	121457609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026318)	promoter-TSS (NM_026318)	21.0	NM_026318	67693.0	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	60.64	59.44	46.25	51.28	51.32	49.03	57.03	49.52	22.48
Merged-chr15-66093692-3	chr15	66093178	66094178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	-116874.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	13.16	8.75	3.7	8.77	10.26	11.25	9.51	2.65	5.0
Merged-chr15-77945872-3	chr15	77945395	77946395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017983, intron 7 of 8)	intron (NM_001017983, intron 7 of 8)	10827.0	NM_001168260	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	13.73	4.61	1.85	13.49	2.33	6.43	7.39	1.33	3.12
Merged-chr1-131096494-3	chr1	131096027	131097027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	1316.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	343.8	360.79	248.81	333.99	301.36	272.48	347.48	362.13	227.95
Merged-chr8-123009046-3	chr8	123008555	123009555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	33229.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	61.78	70.96	43.47	56.0	52.72	49.83	52.81	43.33	55.58
Merged-chr2-69861600-3	chr2	69861109	69862109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	47.0	NM_009278	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	212.23	220.72	179.44	178.8	154.41	155.13	207.01	155.2	129.28
Merged-chr3-95632925-3	chr3	95632416	95633416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019561)	TTS (NM_019561)	7936.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	161.89	120.26	85.1	163.96	115.23	149.5	174.27	198.53	96.8
Merged-chr11-3144899-2	chr11	3144407	3145407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 17 of 33)	exon (NM_030207, exon 17 of 33)	20886.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	51.48	81.56	120.24	80.29	97.5	117.35	1.06	0.44	152.38
Merged-chr19-38836557-3	chr19	38836052	38837052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362424)	promoter-TSS (NM_001362424)	-27.0	NM_145952	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	92.1	54.37	32.37	75.57	53.18	57.07	59.15	33.16	52.46
Merged-chr15-95822233-3	chr15	95821736	95822736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7836.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	260.86	168.65	131.34	234.8	153.95	144.68	160.54	176.42	112.42
Merged-chr7-45341496-3	chr7	45340986	45341986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 25 of 29)	intron (NM_029741, intron 25 of 29)	6217.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	12.59	7.83	4.62	14.17	3.73	12.06	6.34	5.75	6.25
Merged-chr16-35983279-3	chr16	35982787	35983787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-76.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	307.76	237.76	202.56	320.49	255.65	202.55	321.08	231.25	141.77
Merged-chr6-90550725-3	chr6	90550226	90551226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027406)	promoter-TSS (NM_027406)	-67.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	25.74	34.1	19.42	35.76	31.26	26.53	40.14	31.84	21.86
Merged-chr8-70766516-1	chr8	70766016	70767016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023065, exon 1 of 8)	exon (NM_023065, exon 1 of 8)	147.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	351.24	218.41	197.02	300.92	225.32	273.29	278.83	345.33	196.1
Merged-chr11-73193317-3	chr11	73192816	73193816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357891, intron 3 of 11)	intron (NM_001357891, intron 3 of 11)	5703.0	NM_031251	83429.0	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	35.47	23.96	32.37	24.29	11.66	49.03	15.84	11.5	7.49
Merged-chr2-29125035-3	chr2	29124529	29125529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198033)	promoter-TSS (NM_198033)	37.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	151.02	89.39	86.02	107.95	104.03	128.61	120.41	104.79	66.82
Merged-chr18-77946966-3	chr18	77946463	77947463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 1 of 43)	MTE-int|LTR|ERVL-MaLR	8496.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	75.51	74.19	70.3	35.76	20.99	15.27	83.44	84.9	38.1
Merged-chr14-31323955-3	chr14	31323441	31324441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033668)	promoter-TSS (NM_001033668)	-45.0	NM_001033668	110084.0	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	18.31	12.9	7.4	24.29	13.06	29.74	15.84	19.46	14.99
Merged-chr6-31116559-3	chr6	31116067	31117067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	MIRb|SINE|MIR	-53474.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	153.88	132.25	107.29	149.11	113.83	128.61	177.44	169.35	86.81
Merged-chr7-100537073-3	chr7	100536560	100537560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183270)	promoter-TSS (NM_183270)	-40.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	144.16	104.6	94.35	198.37	166.54	122.98	140.47	150.78	65.58
Merged-chrM-756-2	chrM	256	1256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											259.14	215.19	26.82	109.98	48.52	20.9	107.73	40.68	25.61
Merged-chr5-121837086-3	chr5	121836572	121837572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008507)	promoter-TSS (NM_008507)	-213.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	438.77	370.01	317.26	400.11	334.49	342.41	254.54	266.63	170.5
Merged-chr11-29497259-3	chr11	29496761	29497761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	17772.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	30.32	31.33	25.9	26.99	25.19	20.9	20.07	27.86	18.74
Merged-chr2-52959225-3	chr2	52958724	52959724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	101356.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	63.5	38.25	31.45	58.7	39.65	32.96	32.74	43.77	17.49
Merged-chr5-146247895-3	chr5	146247354	146248354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	L1MB8|LINE|L1	16604.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	84.66	105.98	83.25	86.36	72.78	75.56	79.21	86.22	52.46
Merged-chr19-10947392-3	chr19	10946853	10947853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	1913.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	149.88	158.51	154.47	125.5	123.16	135.84	193.28	195.88	111.79
Merged-chr4-11016726-3	chr4	11016238	11017238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9119.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	10.87	7.83	1.85	13.49	16.79	14.47	12.67	13.71	6.25
Merged-chr7-90041780-3	chr7	90041277	90042277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	12618.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	255.14	238.23	189.62	267.86	185.67	192.11	264.05	237.89	126.78
Merged-chr14-40967098-3	chr14	40966566	40967566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145928)	promoter-TSS (NM_145928)	-170.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	70.93	69.58	71.22	74.89	57.38	76.36	72.88	49.96	48.71
Merged-chr16-76241476-3	chr16	76240986	76241986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118873.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	13.73	17.51	9.25	16.19	15.39	10.45	13.73	16.8	8.74
Merged-chr12-102646758-3	chr12	102646250	102647250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	MIR3|SINE|MIR	38270.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	95.53	88.93	90.65	66.8	55.05	110.92	86.61	79.59	70.57
Merged-chr3-144207093-3	chr3	144206598	144207598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1843.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	13.16	20.27	11.1	6.75	4.2	11.25	16.9	22.55	19.36
Merged-chr11-59554361-3	chr11	59553847	59554847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 5 of 9)	RSINE1|SINE|B4	11661.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	131.0	98.61	55.5	211.86	126.42	96.45	123.57	83.13	58.71
Merged-chr10-44380713-3	chr10	44380239	44381239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21063.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	395.86	412.4	185.92	346.8	323.76	216.22	289.39	422.71	154.88
Merged-chr7-120835594-3	chr7	120835087	120836087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7244.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	84.66	76.03	118.39	99.18	78.37	88.42	118.29	156.09	91.81
Merged-chr17-35766544-3	chr17	35765986	35766986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5964.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	24.03	23.96	21.27	23.62	12.13	12.06	45.42	48.64	21.23
Merged-chr2-155613562-3	chr2	155613063	155614063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085378, exon 4 of 42)	exon (NM_001085378, exon 4 of 42)	2320.0	NM_001085378	668940.0	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	6.86	4.61	3.7	13.49	7.46	4.82	5.28	3.54	6.25
Merged-chr4-19570094-3	chr4	19569597	19570597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356481)	promoter-TSS (NM_001356481)	11.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	82.38	76.49	89.72	100.53	75.57	90.02	72.88	60.58	58.71
Merged-chr17-33563922-3	chr17	33563434	33564434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	L3b|LINE|CR1	8227.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	103.54	129.02	123.94	75.57	80.24	99.67	96.11	130.44	101.17
Merged-chr11-32349806-3	chr11	32349310	32350310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	1999.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	136.15	139.16	94.35	17.54	40.12	31.35	35.91	25.65	16.86
Merged-chr13-32801960-3	chr13	32801443	32802443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-87.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	66.93	74.19	69.37	62.07	51.32	64.3	49.64	50.41	40.59
Merged-chr9-85749411-3	chr9	85748886	85749886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081282)	promoter-TSS (NM_001081282)	-52.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	299.76	270.02	229.39	271.91	284.1	229.88	302.07	259.55	218.58
Merged-chr7-16924593-1	chr7	16924093	16925093	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-561.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	256.85	245.6	115.62	256.39	242.58	193.71	221.8	227.27	102.42
Merged-chr13-98815335-3	chr13	98814833	98815833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172591, exon 1 of 26)	5' UTR (NM_172591, exon 1 of 26)	116.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	383.28	238.69	258.06	379.87	276.17	237.12	286.23	248.06	162.38
Merged-chr5-43868869-3	chr5	43868369	43869369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	60.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	219.1	211.96	188.69	313.07	223.46	239.53	289.39	319.24	111.17
Merged-chr15-57923081-3	chr15	57922582	57923582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167679, exon 4 of 18)	exon (NM_001167679, exon 4 of 18)	10883.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	207.66	234.54	167.42	224.01	163.28	150.31	223.91	252.48	136.15
Merged-chr16-93798796-3	chr16	93798313	93799313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-3912.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	130.43	100.91	56.42	116.05	81.17	42.6	126.74	170.68	31.85
Merged-chr5-113016193-3	chr5	113015697	113016697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-659.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	115.55	121.19	112.84	78.27	65.78	90.02	101.39	82.24	69.95
Merged-chr8-117367637-3	chr8	117367129	117368129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	18459.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	29.75	13.36	20.35	34.41	15.86	27.33	17.96	17.69	19.98
Merged-chr1-86528289-3	chr1	86527786	86528786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	1729.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	245.98	239.61	195.17	232.1	232.32	213.81	153.15	218.43	154.26
Merged-chr6-125367883-3	chr6	125367393	125368393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198604, intron 14 of 16)	intron (NM_198604, intron 14 of 16)	12611.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	89.24	51.61	83.25	69.5	41.99	61.09	70.76	61.02	66.2
Merged-chr4-9649626-3	chr4	9649172	9650172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	-5955.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	57.21	55.75	52.72	68.82	34.52	54.66	135.19	131.77	73.69
Merged-chr6-134220460-3	chr6	134219965	134220965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-175864.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	251.13	171.41	99.89	208.49	109.16	95.65	156.32	172.0	97.43
Merged-chr17-56079492-2	chr17	56078995	56079995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	-136.0	NM_001304784	15193.0	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfl2	HRP-2|Hdgfrp2	HDGF like 2	protein-coding	71.51	58.06	62.9	51.95	27.06	39.39	65.48	50.41	43.09
Merged-chr2-153199298-3	chr2	153198791	153199791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26150.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	312.34	264.03	152.62	321.17	211.79	149.5	220.74	272.82	127.4
Merged-chr1-38129950-3	chr1	38129442	38130442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359287)	promoter-TSS (NM_001359287)	-276.0	NM_001359288	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	207.08	92.62	85.1	177.45	82.11	81.18	161.6	56.6	64.33
Merged-chr8-119558852-3	chr8	119558359	119559359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019709)	promoter-TSS (NM_019709)	-98.0	NM_019709	56453.0	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	113.84	79.72	134.12	91.09	51.32	92.44	135.19	77.38	76.19
Merged-chr10-30811093-3	chr10	30810599	30811599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_001358842	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	9.72	8.29	9.25	13.49	14.46	6.43	10.56	6.63	8.74
Merged-chr14-31166231-3	chr14	31165730	31166730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	2411.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	69.22	43.77	42.55	88.39	45.72	73.95	63.37	39.8	61.83
Merged-chr12-87260721-3	chr12	87260214	87261214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134044, exon 3 of 19)	exon (NM_134044, exon 3 of 19)	3530.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	85.81	87.09	31.45	67.47	51.32	46.62	53.87	82.24	43.09
Merged-chr6-88903924-3	chr6	88903418	88904418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1667.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	173.33	180.17	130.42	208.49	214.13	165.58	205.96	209.15	94.3
Merged-chr15-98506430-3	chr15	98505931	98506931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8957.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	93.24	68.66	44.4	82.99	69.98	67.52	51.75	74.28	56.83
Merged-chr7-45017716-3	chr7	45017220	45018220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-222.0	NM_009101	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	135.58	121.19	123.94	124.15	97.5	114.14	136.25	127.79	95.55
Merged-chr1-74241048-1	chr1	74240548	74241548	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	4531.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	50.34	65.43	65.67	49.93	41.52	38.58	67.6	67.21	51.84
Merged-chr5-130029333-3	chr5	130028817	130029817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007761)	promoter-TSS (NM_007761)	11.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	149.88	162.66	138.74	127.52	150.22	184.87	135.19	154.32	97.43
Merged-chrX-7841229-3	chrX	7840741	7841741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138604)	promoter-TSS (NM_138604)	-590.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	94.96	87.55	64.75	61.4	55.05	49.03	92.94	119.83	29.98
Merged-chr17-35331529-2	chr17	35331029	35332029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10804.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	8.01	4.15	1.85	2.7	7.0	8.84	1.06	2.65	0.0
Merged-chr2-3519992-3	chr2	3519492	3520492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177647, intron 2 of 3)	RMER10A|LTR|ERVL	6927.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	70.36	80.18	73.07	60.05	66.24	57.07	62.31	57.48	51.84
Merged-chr13-62624122-3	chr13	62623618	62624618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324406)	promoter-TSS (NM_001324406)	64.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	25.17	23.5	24.05	23.62	18.19	16.08	61.26	42.89	29.35
Merged-chr5-100656502-3	chr5	100655980	100656980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 6 of 6)	intron (NM_027978, intron 6 of 6)	17776.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	36.61	35.48	36.07	35.76	18.19	26.53	58.09	47.31	27.48
Merged-chr1-143929911-1	chr1	143929411	143930411	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74238.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	9.15	7.37	12.95	5.4	7.0	6.43	7.39	7.07	4.37
Merged-chr11-75486689-3	chr11	75486190	75487190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138659)	promoter-TSS (NM_138659)	-87.0	NM_138659	192159.0	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	323.21	404.11	246.96	298.23	352.68	196.93	303.13	310.4	151.14
Merged-chr15-98534340-3	chr15	98533819	98534819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289437)	promoter-TSS (NM_001289437)	-50.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	263.72	197.22	182.22	281.36	186.6	158.35	219.69	222.85	116.16
Merged-chr2-126499909-3	chr2	126499421	126500421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-74.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	68.65	69.12	31.45	76.92	67.64	73.14	16.9	23.43	13.74
Merged-chr8-33929350-3	chr8	33928846	33929846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	517.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	90.96	88.93	47.17	137.64	83.51	106.1	288.34	181.73	138.02
Merged-chr17-13660101-3	chr17	13659576	13660576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-100465.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	48.62	49.3	53.65	42.51	46.18	57.07	72.88	72.52	47.46
Merged-chr10-10321330-3	chr10	10320831	10321831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150983.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	17.16	15.21	12.95	35.09	27.06	46.62	13.73	9.29	7.49
Merged-chr10-78392340-3	chr10	78391835	78392835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16210.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	37.18	28.11	26.82	41.16	20.53	39.39	41.19	33.6	14.36
Merged-chr9-45246277-3	chr9	45245797	45246797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	20410.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	361.54	377.84	246.04	332.64	265.44	242.74	278.83	382.03	210.47
Merged-chr2-17643121-1	chr2	17642621	17643621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028757, intron 2 of 6)	L1MB3|LINE|L1	79607.0	NR_105847	102465964.0		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	4.0	0.46	0.0	2.02	3.73	1.61	1.06	1.77	3.75
Merged-chr16-21913540-3	chr16	21913053	21914053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172821, intron 8 of 12)	Lx8b|LINE|L1	21584.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	44.62	31.79	11.1	88.39	51.32	27.33	61.26	63.23	13.12
Merged-chrX-13208154-3	chrX	13207657	13208657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28126.0	NR_045430	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	20.59	10.14	3.7	11.47	9.8	4.02	10.56	15.92	1.25
Merged-chr6-50114443-3	chr6	50113946	50114946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	3586.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	75.51	107.82	60.12	65.45	78.37	46.62	54.92	63.23	48.71
Merged-chr19-45660494-3	chr19	45659990	45660990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013907)	promoter-TSS (NM_013907)	-297.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	285.45	205.97	202.56	244.92	225.79	184.87	256.65	195.88	142.39
Merged-chr1-152768262-3	chr1	152767765	152768765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	1723.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	22.31	12.44	20.35	12.14	12.6	10.45	12.67	15.92	11.24
Merged-chr13-52929651-3	chr13	52929145	52930145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016709)	promoter-TSS (NM_016709)	32.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	48.62	27.19	22.2	48.58	28.46	40.19	77.1	37.14	36.22
Merged-chr19-38054451-3	chr19	38053975	38054975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-509.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	29.75	24.42	12.95	24.96	12.6	31.35	33.8	49.52	29.35
Merged-chr1-144268167-6	chr1	144267649	144268649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-19045.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	132.14	164.04	112.84	132.24	141.82	125.39	138.36	154.76	100.55
Merged-chr8-119437048-3	chr8	119436547	119437547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-115.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	220.24	228.09	190.54	242.9	213.19	212.2	260.88	291.83	182.36
Merged-chr19-10577317-3	chr19	10576767	10577767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302218)	promoter-TSS (NM_001302218)	110.0	NM_001282064	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	88.1	79.72	64.75	79.62	68.11	69.13	64.43	83.57	51.84
Merged-chr14-79587482-5	chr14	79586992	79587992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026474)	promoter-TSS (NM_026474)	-168.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	310.63	449.26	258.06	267.19	349.41	273.29	335.87	342.24	143.02
Merged-chr3-58415977-1	chr3	58415477	58416477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	1257.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	199.65	228.55	169.27	171.38	193.6	180.05	178.5	153.43	133.65
Merged-chr14-59297581-3	chr14	59297070	59298070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172603)	promoter-TSS (NM_172603)	-48.0	NM_172603	219131.0	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	46.91	59.44	51.8	65.45	57.85	41.8	95.06	92.41	44.97
Merged-chr12-12225830-3	chr12	12225330	12226330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36309.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	100.11	93.54	78.62	102.56	54.11	47.42	106.67	103.47	68.7
Merged-chr12-21316419-3	chr12	21315927	21316927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026347)	promoter-TSS (NM_026347)	35.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	46.91	46.54	77.7	52.63	57.38	61.89	35.91	30.95	54.96
Merged-chr12-32199605-3	chr12	32199123	32200123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020272, intron 4 of 10)	intron (NM_020272, intron 4 of 10)	8715.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	30.89	36.86	22.2	29.69	24.72	36.97	35.91	28.3	11.24
Merged-chr1-157048309-3	chr1	157047796	157048796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60354.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	120.13	94.0	127.64	97.16	75.11	97.26	87.66	114.52	78.07
Merged-chr1-183979968-3	chr1	183979448	183980448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54050.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	107.55	133.17	87.87	109.98	111.96	114.14	135.19	158.74	86.18
Merged-chr18-84355430-3	chr18	84354913	84355913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 4 of 8)	intron (NM_001033341, intron 4 of 8)	234091.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	17.73	17.05	8.32	22.94	19.13	32.15	23.24	17.24	11.24
Merged-chr4-123551989-3	chr4	123551497	123552497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-64423.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	38.9	53.45	36.07	33.06	41.05	32.96	35.91	37.14	21.86
Merged-chr2-34905147-3	chr2	34904691	34905691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028716, intron 6 of 14)	intron (NM_028716, intron 6 of 14)	8785.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	61.78	48.38	59.2	51.95	43.39	52.25	58.09	64.11	51.84
Merged-chr13-75797948-3	chr13	75797445	75798445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41940.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	70.93	53.91	46.25	82.32	56.45	28.94	82.38	71.63	42.47
Merged-chr1-91540545-3	chr1	91540054	91541054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039126)	promoter-TSS (NM_001039126)	-11.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	44.62	34.56	32.37	45.21	33.12	45.82	35.91	36.26	17.49
Merged-chr8-66440165-3	chr8	66439651	66440651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	46379.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	42.33	34.56	45.32	28.34	13.06	38.58	52.81	27.41	34.97
Merged-chr9-13296625-3	chr9	13296141	13297141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49685.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	126.42	85.71	99.89	99.18	70.44	62.7	86.61	65.88	63.7
Merged-chr18-8694247-3	chr18	8693709	8694709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-518647.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	48.62	38.71	47.17	0.0	0.47	0.0	67.6	51.73	66.82
Merged-chr1-176814761-3	chr1	176814265	176815265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151682, exon 1 of 17)	non-coding (NR_151682, exon 1 of 17)	105.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	205.94	224.4	123.02	215.23	181.01	147.9	177.44	155.64	104.92
Merged-chr15-75981946-3	chr15	75981448	75982448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163518, exon 1 of 1)	exon (NM_001163518, exon 1 of 1)	337.0	NM_001163518	223648.0	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	93.24	100.45	93.42	126.17	121.29	118.96	82.38	97.72	51.84
Merged-chr2-145434275-3	chr2	145433779	145434779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	120703.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	9.72	22.12	12.02	6.75	14.0	15.27	16.9	22.11	13.12
Merged-chr7-4877013-3	chr7	4876505	4877505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101598)	promoter-TSS (NM_001101598)	-48.0	NM_001101598	664994.0	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	79.52	82.02	34.22	70.85	74.17	51.44	88.72	80.03	44.97
Merged-chr16-8769324-3	chr16	8768841	8769841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30999.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	30.32	23.96	44.4	22.27	25.19	36.17	24.29	38.03	17.49
Merged-chr11-6547229-1	chr11	6546729	6547729	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190343, intron 1 of 8)	CpG	342.0	NM_001190343	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	160.75	96.76	103.59	114.7	102.17	100.47	107.73	72.52	74.94
Merged-chr1-40322037-3	chr1	40321529	40322529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2560.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	20.59	29.49	12.95	24.29	28.46	19.29	26.4	17.24	19.98
Merged-chr4-59888188-3	chr4	59887665	59888665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 6 of 8)	intron (NM_172468, intron 6 of 8)	26891.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	28.03	22.58	9.25	28.34	21.93	19.29	11.62	15.48	18.11
Merged-chr8-34865760-1	chr8	34865260	34866260	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 11 of 26)	intron (NM_175091, intron 11 of 26)	58150.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.86	6.45	0.0	14.84	12.13	10.45	3.17	2.21	2.5
Merged-chr15-84996072-3	chr15	84995584	84996584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8113.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	77.23	62.67	73.07	81.64	66.24	83.59	119.35	78.71	58.71
Merged-chr11-54885118-3	chr11	54884636	54885636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17718.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	174.48	189.38	161.87	197.69	234.65	246.76	247.15	242.75	147.39
Merged-chr1-191756749-3	chr1	191756237	191757237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 4 of 7)	intron (NM_001134829, intron 4 of 7)	38342.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	34.9	32.25	12.02	26.31	12.6	20.9	27.46	11.94	19.36
Merged-chr13-112787206-2	chr13	112786693	112787693	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-13584.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.72	5.53	0.0	52.63	29.86	14.47	61.26	84.01	26.85
Merged-chr11-3135438-2	chr11	3134934	3135934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 27 of 33)	exon (NM_030207, exon 27 of 33)	11413.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	36.04	30.87	99.89	56.68	39.19	124.59	0.0	0.0	147.39
Merged-chr9-46009851-3	chr9	46009336	46010336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357241, intron 1 of 5)	MIR|SINE|MIR	2854.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	85.81	76.49	49.02	87.04	47.12	40.99	72.88	76.94	57.46
Merged-chr5-65137937-3	chr5	65137438	65138438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	6707.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	34.32	33.18	21.27	35.09	18.19	25.72	48.58	27.41	11.24
Merged-chr13-98814713-3	chr13	98814242	98815242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	CpG	707.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	299.18	240.07	207.19	297.55	223.46	228.28	322.14	227.27	176.74
Merged-chr6-39781511-3	chr6	39781018	39782018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29418.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	240.83	308.73	240.49	234.8	237.92	225.86	262.99	292.27	141.14
Merged-chr13-59557374-3	chr13	59556887	59557887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284218)	promoter-TSS (NM_001284218)	-40.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	21.17	13.82	24.97	38.46	11.66	40.99	43.3	14.59	22.48
Merged-chrX-167210358-3	chrX	167209863	167210863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1145.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	173.9	163.58	61.05	151.81	103.1	80.38	120.41	163.6	84.94
Merged-chr16-36714362-3	chr16	36713889	36714889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	RLTR28|LTR|ERVL	20411.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	33.75	28.57	22.2	19.57	20.53	20.09	36.97	25.2	19.98
Merged-chr2-129549946-3	chr2	129549468	129550468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13366.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	77.8	94.46	52.72	80.97	54.58	59.48	52.81	51.73	33.1
Merged-chr11-69099363-3	chr11	69098877	69099877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	428.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	557.75	421.16	317.26	572.16	469.77	308.65	410.86	461.62	193.6
Merged-chr16-26581636-3	chr16	26581158	26582158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134103)	promoter-TSS (NM_134103)	-47.0	NM_001159318	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	18.88	11.06	22.2	24.96	22.39	40.99	22.18	17.69	17.49
Merged-chr8-119605209-3	chr8	119604716	119605716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021441)	promoter-TSS (NM_021441)	24.0	NM_021441	21341.0	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	35.47	37.78	28.67	34.41	35.92	58.68	45.42	41.12	24.98
Merged-chr7-65693486-3	chr7	65692976	65693976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026795)	promoter-TSS (NM_026795)	59.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	73.22	74.19	68.45	83.66	94.23	101.28	108.79	69.42	36.22
Merged-chr7-127346154-3	chr7	127345659	127346659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-845.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	116.7	105.98	110.99	95.81	75.57	107.71	111.96	92.86	78.69
Merged-chr12-8433071-3	chr12	8432592	8433592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	66917.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	6.29	9.22	14.8	8.1	6.06	7.23	4.22	1.33	5.0
Merged-chr11-43368638-3	chr11	43368104	43369104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5857.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	111.55	101.37	66.6	103.23	65.31	114.14	80.27	60.58	46.84
Merged-chr2-73386694-3	chr2	73386217	73387217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190297)	promoter-TSS (NM_001190297)	-237.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	87.52	77.41	63.82	79.62	58.78	76.36	98.23	88.88	80.56
Merged-chr19-5406590-1	chr19	5406090	5407090	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	-225.0	NR_015545	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	4.0	1.84	8.32	3.37	5.6	2.41	258.77	345.33	182.36
Merged-chr2-167805927-5	chr2	167805425	167806425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114748.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	258.57	259.88	164.64	240.2	188.0	210.59	203.84	272.37	133.65
Merged-chr15-25605589-3	chr15	25605131	25606131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16919.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	78.37	63.59	57.35	33.06	18.19	45.01	42.25	28.74	34.35
Merged-chr10-14133105-3	chr10	14132615	14133615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 5 of 9)	intron (NM_001358782, intron 5 of 9)	166736.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	72.65	53.91	47.17	46.56	46.18	60.28	35.91	57.48	44.34
Merged-chr17-49429275-3	chr17	49428775	49429775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	911.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	96.68	139.16	90.65	91.76	95.63	142.27	95.06	87.11	82.44
Merged-chr16-11253477-3	chr16	11252958	11253958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035466)	TTS (NR_035466)	867.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	286.6	303.66	258.06	247.62	297.63	262.04	280.95	252.92	203.6
Merged-chr10-88357167-3	chr10	88356658	88357658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027878)	promoter-TSS (NM_027878)	-83.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	239.12	175.56	141.52	244.92	184.27	162.37	191.17	236.56	134.9
Merged-chr1-53774208-3	chr1	53773725	53774725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	10990.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	127.0	141.0	94.35	81.64	95.17	94.85	122.52	120.71	94.93
Merged-chr7-101551700-3	chr7	101551186	101552186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033804)	TTS (NR_033804)	4116.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	352.39	314.25	203.49	302.95	217.86	231.49	268.27	368.77	144.89
Merged-chr1-34849889-6	chr1	34849392	34850392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175421)	promoter-TSS (NM_175421)	-67.0	NM_145516	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	309.48	249.75	209.04	311.04	268.24	213.0	340.09	313.5	202.97
Merged-chr3-65188022-3	chr3	65187541	65188541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289450)	promoter-TSS (NM_001289450)	-62.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	52.63	58.98	29.6	67.47	42.92	36.97	69.71	78.26	37.47
Merged-chr11-90234673-3	chr11	90234149	90235149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-14827.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	106.97	80.64	31.45	94.46	70.44	91.63	81.33	80.47	39.35
Merged-chr2-70968509-3	chr2	70968005	70969005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	49869.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	125.85	142.38	67.52	166.66	150.68	120.57	165.82	198.09	90.56
Merged-chr17-5492556-3	chr17	5492061	5493061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146073)	promoter-TSS (NM_146073)	-39.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	192.78	193.99	173.89	250.32	181.47	213.81	267.21	250.71	147.39
Merged-chr4-134730136-3	chr4	134729634	134730634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-25844.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	96.68	62.21	92.5	89.74	73.71	68.32	74.99	92.41	57.46
Merged-chr14-79549643-3	chr14	79549151	79550151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	33977.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	192.21	206.89	99.89	170.7	135.75	102.08	154.2	146.8	96.18
Merged-chr2-173020032-3	chr2	173019508	173020508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	18.88	15.67	7.4	20.92	10.73	10.45	22.18	21.22	6.87
Merged-chr11-106623827-3	chr11	106623335	106624335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-10905.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	25.74	27.65	37.92	34.41	27.52	27.33	40.14	35.82	30.6
Merged-chr5-108246523-3	chr5	108246027	108247027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22370.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	36.61	37.32	28.67	49.93	25.66	26.53	12.67	19.9	21.23
Merged-chr2-158174684-3	chr2	158174205	158175205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17303.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	269.44	180.63	165.57	294.18	230.92	208.98	214.41	229.48	139.27
Merged-chr3-137947036-3	chr3	137946527	137947527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28472.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	184.2	175.56	111.92	133.59	126.42	116.55	147.87	173.77	109.29
Merged-chr16-77030604-3	chr16	77030110	77031110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	16541.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	42.33	23.04	31.45	35.76	28.92	32.15	31.69	35.37	25.61
Merged-chr8-12756953-3	chr8	12756456	12757456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293667)	promoter-TSS (NM_001293667)	-60.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	34.32	21.66	32.37	37.78	29.39	16.88	47.53	17.69	14.36
Merged-chr3-58672164-3	chr3	58671662	58672662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20120.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	18.31	11.06	5.55	14.84	9.33	9.65	20.07	7.07	7.49
Merged-chr11-119377541-3	chr11	119377021	119378021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 14 of 16)	intron (NM_178743, intron 14 of 16)	-12951.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	41.76	40.09	37.92	97.16	61.58	81.18	136.25	160.51	84.94
Merged-chr18-3281918-3	chr18	3281421	3282421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-174.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	118.99	202.75	110.99	135.62	190.34	159.95	157.37	214.45	95.55
Merged-chr11-68863983-3	chr11	68863456	68864456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10825.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	191.07	176.48	97.12	168.68	142.75	103.69	140.47	162.28	118.04
Merged-chrX-48424814-3	chrX	48424315	48425315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	38317.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	72.65	89.39	64.75	80.29	60.65	81.18	79.21	108.33	48.71
Merged-chr6-48086127-3	chr6	48085636	48086636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362062, intron 1 of 5)	CpG	457.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	101.25	60.82	75.85	115.38	47.12	69.13	136.25	39.35	62.45
Merged-chr12-100202044-3	chr12	100201561	100202561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313934, intron 1 of 5)	AmnSINE1|SINE|Deu	1917.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	59.49	63.13	44.4	51.95	62.98	49.83	60.2	57.48	31.85
Merged-chr10-81167879-3	chr10	81167388	81168388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021501)	promoter-TSS (NM_021501)	-168.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	98.97	84.32	64.75	85.01	66.71	62.7	96.11	82.69	68.07
Merged-chr8-66334448-3	chr8	66333944	66334944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-51857.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	53.2	64.05	43.47	53.3	57.85	55.46	74.99	74.73	46.84
Merged-chr4-133056211-3	chr4	133055706	133056706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	44700.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	21.74	9.68	21.27	17.54	8.86	16.08	17.96	14.15	18.74
Merged-chr5-32138565-3	chr5	32138062	32139062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2090.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	126.42	170.95	134.12	81.64	137.62	147.9	132.02	139.28	149.26
Merged-chr3-40846815-3	chr3	40846308	40847308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038067)	promoter-TSS (NR_038067)	46.0	NM_028140	72175.0	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	37.18	38.25	31.45	26.99	34.06	40.19	67.6	39.8	27.48
Merged-chr1-134083838-3	chr1	134083337	134084337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4682.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	64.64	52.53	76.77	68.82	57.85	84.4	58.09	48.2	56.21
Merged-chr7-38267816-2	chr7	38267262	38268262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025390, intron 2 of 6)	intron (NM_025390, intron 2 of 6)	3586.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	12.59	14.28	16.65	13.49	13.06	18.49	12.67	9.73	9.37
Merged-chr5-122354361-3	chr5	122353902	122354902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144912)	promoter-TSS (NM_144912)	74.0	NR_152872	56433.0	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	163.04	92.62	97.12	151.81	106.36	113.33	142.59	109.22	67.45
Merged-chr8-122946026-3	chr8	122945512	122946512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	96272.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	65.21	41.01	21.27	37.11	27.99	8.84	30.63	26.09	17.49
Merged-chr8-128605771-3	chr8	128605217	128606217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-79937.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	28.03	21.2	14.8	43.18	31.72	32.96	26.4	19.01	15.61
Merged-chr7-101363641-3	chr7	101363169	101364169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-14453.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	293.46	255.74	199.79	395.38	284.57	216.22	255.6	267.95	109.92
Merged-chr17-46880000-3	chr17	46879498	46880498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10623.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	56.06	43.77	18.5	69.5	48.05	29.74	24.29	39.35	18.11
Merged-chr2-156415856-3	chr2	156415360	156416360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-5049.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	45.19	24.42	18.5	53.3	22.39	42.6	62.31	63.23	25.61
Merged-chr10-127632129-3	chr10	127631609	127632609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10877.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	133.86	97.23	74.92	177.45	76.97	136.64	117.24	97.72	86.81
Merged-chr3-138443097-3	chr3	138442584	138443584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-9.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	73.79	69.12	95.27	116.05	130.16	95.65	123.57	109.22	51.21
Merged-chr1-93512030-3	chr1	93511537	93512537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145519)	promoter-TSS (NM_145519)	-67.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	50.34	27.19	38.85	49.25	32.19	41.8	48.58	29.63	28.73
Merged-chr5-23432912-3	chr5	23432412	23433412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040469, exon 1 of 1)	non-coding (NR_040469, exon 1 of 1)	1441.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	557.75	555.24	322.81	479.05	512.69	309.46	392.9	482.85	214.84
Merged-chr6-106769151-3	chr6	106768704	106769704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027296)	promoter-TSS (NM_027296)	66.0	NM_001242360	70047.0	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	135.58	176.94	90.65	161.26	172.61	90.83	162.65	186.59	59.95
Merged-chr2-124626624-3	chr2	124626115	124627115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	16319.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	97.25	64.97	41.62	132.92	89.1	79.58	83.44	84.45	36.85
Merged-chr2-48766758-3	chr2	48766267	48767267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47342.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	22.88	14.28	7.4	22.94	10.26	11.25	20.07	17.24	11.87
Merged-chr11-83066869-3	chr11	83066371	83067371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	intron (NM_011408, intron 1 of 1)	1759.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	143.59	134.09	73.07	112.0	71.38	110.12	146.81	130.88	94.93
Merged-chr15-75857313-5	chr15	75856819	75857819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5020.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	151.02	165.88	139.67	170.03	118.96	148.7	188.0	166.7	127.4
Merged-chr15-78597044-3	chr15	78596554	78597554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028195)	promoter-TSS (NM_028195)	7.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	102.97	105.06	98.05	133.59	112.9	134.23	177.44	200.3	95.55
Merged-chr7-28811429-3	chr7	28810918	28811918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177301, intron 1 of 12)	CpG	528.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	200.22	184.77	185.92	180.15	143.22	123.78	174.27	167.14	114.91
Merged-chr13-37620042-4	chr13	37619556	37620556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205982.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	278.02	256.66	146.14	364.35	271.97	233.9	360.16	351.52	124.91
Merged-chr11-69411821-3	chr11	69411317	69412317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	1858.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	270.01	181.09	151.69	238.18	161.41	167.19	202.79	253.36	141.14
Merged-chr2-132846661-3	chr2	132846164	132847164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-2.0	NM_001024385	66586.0	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	48.05	30.87	20.35	51.95	36.39	43.4	41.19	23.43	25.61
Merged-chr9-77917268-3	chr9	77916775	77917775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	-90.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	183.63	148.83	97.12	176.1	136.69	122.98	147.87	144.59	103.05
Merged-chr12-84766442-3	chr12	84765891	84766891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	RMER13A1|LTR|ERVK	6721.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	41.76	41.93	38.85	55.33	31.72	28.13	28.52	46.43	33.72
Merged-chr17-34331462-2	chr17	34330958	34331958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033978, intron 1 of 4)	intron (NM_001033978, intron 1 of 4)	5783.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	6.29	0.92	0.0	2.02	1.87	0.8	2.11	4.86	3.12
Merged-chr5-9069060-3	chr5	9068572	9069572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31665.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	20.59	13.82	16.65	16.87	12.13	12.86	17.96	9.73	7.49
Merged-chr13-110960440-3	chr13	110959945	110960945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56599.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	18.88	7.83	12.95	12.82	12.6	15.27	16.9	12.82	11.87
Merged-chr19-29488619-3	chr19	29488115	29489115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33372.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	393.0	335.45	206.26	392.01	351.28	254.8	295.73	421.39	166.75
Merged-chr12-35026147-3	chr12	35025649	35026649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21040.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	104.11	111.97	65.67	90.41	66.71	58.68	55.98	75.61	58.71
Merged-chr2-62460541-3	chr2	62460056	62461056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Plat_L3|LINE|CR1	23097.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	16.02	18.43	4.62	12.14	8.4	22.51	14.79	7.96	6.25
Merged-chrM-2614-2	chrM	2129	3129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											235.11	222.1	12.02	146.41	29.86	20.9	132.02	48.64	24.98
Merged-chr11-96977820-3	chr11	96977331	96978331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080964)	promoter-TSS (NM_001080964)	-143.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	260.28	164.96	157.24	234.13	118.49	151.11	253.48	186.59	110.54
Merged-chr9-105495169-3	chr9	105494685	105495685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175025)	promoter-TSS (NM_175025)	-52.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	168.76	124.41	147.99	149.79	125.96	199.34	199.62	176.87	111.17
Merged-chr9-83925075-3	chr9	83924518	83925518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305935)	promoter-TSS (NM_001305935)	-119.0	NM_001305935	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	17.16	11.06	12.95	16.19	9.33	9.65	15.84	14.59	7.49
Merged-chr7-19083958-3	chr7	19083462	19084462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126095, exon 1 of 15)	non-coding (NR_126095, exon 1 of 15)	113.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	169.9	201.36	176.67	180.82	161.88	181.66	282.0	270.16	202.35
Merged-chr11-77372524-3	chr11	77372055	77373055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	24275.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	102.4	84.78	56.42	94.46	59.25	49.83	85.55	114.52	81.19
Merged-chr10-21077273-3	chr10	21076793	21077793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177776, intron 6 of 6)	intron (NM_001177776, intron 6 of 6)	36473.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	77.23	67.27	54.57	64.1	54.11	57.87	59.15	38.91	26.85
Merged-chr1-191334657-3	chr1	191334167	191335167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	8702.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	116.13	65.89	51.8	92.44	46.18	64.3	57.03	54.39	33.72
Merged-chr18-83984182-3	chr18	83983678	83984678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	102384.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	34.32	14.75	12.95	12.14	11.66	15.27	51.75	60.58	36.85
Merged-chr3-95673880-3	chr3	95673332	95674332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14085.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	284.31	156.21	138.74	249.65	133.89	184.87	247.15	262.65	127.4
Merged-chr9-21424821-3	chr9	21424323	21425323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253893)	promoter-TSS (NM_001253893)	-85.0	NM_007871	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	99.54	157.13	174.82	107.28	123.16	117.35	133.08	139.72	111.17
Merged-chr16-11134709-3	chr16	11134192	11135192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029582)	promoter-TSS (NM_029582)	-160.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	383.28	342.82	226.61	337.36	278.04	233.9	260.88	272.82	187.36
Merged-chr9-96719920-3	chr9	96719420	96720420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359960)	promoter-TSS (NM_001359960)	-70.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	306.62	268.64	203.49	300.25	244.92	228.28	265.1	179.08	118.04
Merged-chrX-102008144-3	chrX	102007639	102008639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	L2c|LINE|L2	63168.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	5.72	4.15	5.55	8.77	3.73	8.04	4.22	2.21	6.25
Merged-chr2-79036491-3	chr2	79036004	79037004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166826.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	20.02	14.28	4.62	14.17	13.06	18.49	14.79	11.94	6.25
Merged-chr6-97429926-3	chr6	97429412	97430412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MTD|LTR|ERVL-MaLR	29374.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	144.16	123.95	96.2	157.88	108.23	99.67	107.73	130.0	78.69
Merged-chr16-11203358-3	chr16	11202839	11203839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038156)	promoter-TSS (NR_038156)	-44.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	244.84	260.34	167.42	181.5	243.52	213.0	230.25	218.43	118.04
Merged-chr11-89076409-3	chr11	89075910	89076910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	Lx9|LINE|L1	2569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	62.93	52.53	43.47	59.38	44.78	39.39	36.97	37.58	39.35
Merged-chr6-29794769-3	chr6	29794291	29795291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	26348.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	86.38	89.85	49.02	91.76	83.04	98.87	114.07	107.45	51.84
Merged-chr11-86757781-5	chr11	86757271	86758271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-204.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	457.64	367.71	345.93	428.45	370.87	316.69	317.91	398.83	199.85
Merged-chr8-57592850-3	chr8	57592348	57593348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	B3A|SINE|B2	-58905.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	133.86	95.84	58.27	100.53	72.31	42.6	149.98	163.6	44.97
Merged-chr9-63602583-3	chr9	63602102	63603102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	-44.0	NM_025857	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	143.59	182.01	118.39	165.98	182.87	163.17	183.78	212.24	69.95
Merged-chr7-141550566-3	chr7	141550056	141551056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10699.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	35.47	43.77	65.67	51.28	44.32	82.79	44.36	39.35	45.59
Merged-chrX-136742106-2	chrX	136741598	136742598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019768)	promoter-TSS (NM_019768)	-489.0	NM_019768	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	97.25	129.48	81.4	97.83	132.95	109.32	132.02	178.19	85.56
Merged-chr4-53227927-3	chr4	53227394	53228394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18302.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	89.24	76.03	35.15	95.81	55.51	56.27	82.38	76.49	18.11
Merged-chr8-104247222-3	chr8	104246711	104247711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 2 of 8)	intron (NR_045642, intron 2 of 8)	1347.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	225.96	226.71	103.59	247.62	225.32	187.28	182.72	208.26	76.19
Merged-chr2-143991488-3	chr2	143990981	143991981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	19782.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	42.33	53.45	50.87	51.95	34.52	40.19	49.64	47.31	49.96
Merged-chr8-75086248-3	chr8	75085738	75086738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	112.69	141.92	102.67	134.27	111.5	151.11	121.46	152.55	64.95
Merged-chr4-127243753-3	chr4	127243236	127244236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-48.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	42.33	43.77	31.45	47.9	50.85	36.97	63.37	38.03	31.23
Merged-chr12-84175865-3	chr12	84175367	84176367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	18148.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	328.36	235.0	204.41	261.79	180.54	217.83	230.25	239.21	143.02
Merged-chr10-128805485-3	chr10	128804970	128805970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359824)	promoter-TSS (NM_001359824)	-84.0	NM_001359825	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	184.2	192.61	160.02	165.98	145.08	137.45	182.72	210.91	111.79
Merged-chr4-20042068-3	chr4	20041574	20042574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010281)	promoter-TSS (NM_010281)	22.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	8.58	13.36	12.02	19.57	11.2	33.76	25.35	21.67	3.75
Merged-chr7-80830612-3	chr7	80830120	80831120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27289.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	174.48	86.17	86.95	161.26	95.17	105.3	145.75	186.59	113.04
Merged-chr18-46598366-3	chr18	46597846	46598846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025698)	promoter-TSS (NM_025698)	642.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	424.46	493.96	373.68	377.17	400.26	301.42	417.19	579.24	259.8
Merged-chr8-120743759-3	chr8	120743261	120744261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008320, exon 3 of 9)	exon (NM_008320, exon 3 of 9)	5122.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	164.18	158.51	110.07	197.02	101.7	149.5	188.0	171.12	98.68
Merged-chr11-116130179-3	chr11	116129680	116130680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178802, intron 1 of 5)	intron (NM_178802, intron 1 of 5)	948.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	267.72	222.1	168.34	240.87	215.53	181.66	185.89	242.31	132.4
Merged-chr10-84549975-3	chr10	84549476	84550476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040658, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	3362.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	29.17	40.55	38.85	41.16	39.19	47.42	58.09	49.52	27.48
Merged-chr8-39403961-2	chr8	39403461	39404461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	105981.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	16.02	12.9	12.95	10.8	9.33	29.74	0.0	4.86	3.75
Merged-chr16-38376997-3	chr16	38376501	38377501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081984, intron 3 of 3)	MTC|LTR|ERVL-MaLR	14811.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	50.34	33.18	45.32	51.95	37.79	48.23	38.02	31.39	25.61
Merged-chr4-136148059-1	chr4	136147559	136148559	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	4237.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	132.14	67.74	106.37	197.02	94.7	88.42	182.72	103.02	79.94
Merged-chr4-40142914-3	chr4	40142373	40143373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-392.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	213.95	323.93	246.96	258.42	378.34	237.12	302.07	324.11	159.88
Merged-chr4-135920679-3	chr4	135920176	135921176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024243)	promoter-TSS (NM_024243)	-50.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	75.51	73.26	92.5	85.69	73.71	84.4	101.39	86.66	63.08
Merged-chr4-119000184-3	chr4	118999669	119000669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38202.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	72.08	51.15	51.8	34.41	43.39	35.37	77.1	62.35	40.59
Merged-chr11-89021064-3	chr11	89020573	89021573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009546)	TTS (NM_009546)	21670.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	189.92	130.86	80.47	205.79	132.02	116.55	133.08	142.82	72.45
Merged-chr10-77266424-3	chr10	77265930	77266930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030262, intron 6 of 8)	intron (NM_030262, intron 6 of 8)	7130.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	121.28	96.76	95.27	118.08	76.51	100.47	98.23	106.56	67.45
Merged-chr16-76366068-3	chr16	76365588	76366588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	6961.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	80.66	76.49	68.45	56.68	26.59	49.03	66.54	64.56	29.98
Merged-chr1-193844636-3	chr1	193844125	193845125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-337095.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	21.17	28.11	14.8	16.87	15.86	17.68	12.67	19.9	8.12
Merged-chr13-94976385-3	chr13	94975895	94976895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172590)	promoter-TSS (NM_172590)	51.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	318.06	231.77	215.51	295.53	234.19	181.66	330.59	231.7	106.17
Merged-chr6-56832124-3	chr6	56831647	56832647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012056)	promoter-TSS (NM_012056)	88.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	36.04	25.34	18.5	68.82	37.79	41.8	36.97	13.27	9.99
Merged-chrX-169980614-1	chrX	169980114	169981114	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 4 of 9)	intron (NM_010797, intron 4 of 9)	-1697.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	329.53	481.96	273.54
Merged-chr6-48579490-3	chr6	48578941	48579941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-6639.0	NM_001347167	71660.0	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	61.21	64.51	49.95	49.93	49.92	57.87	59.15	54.83	33.1
Merged-chr11-70688049-3	chr11	70687580	70688580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178116)	promoter-TSS (NM_178116)	25.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	161.89	124.87	228.46	141.69	98.9	165.58	166.88	152.55	139.27
Merged-chr5-124037089-3	chr5	124036599	124037599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	40.62	34.56	24.05	43.86	27.99	24.92	40.14	47.75	28.73
Merged-chrY-90799335-1	chrY	90798835	90799835	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	13893.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	2.29	0.46	0.0	2.7	3.27	3.22	4.22	8.84	29.98
Merged-chr9-44231131-3	chr9	44230631	44231631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	2915.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	25.74	36.4	48.1	35.09	38.25	36.97	68.65	84.45	46.22
Merged-chr10-77418348-3	chr10	77417852	77418852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027377)	promoter-TSS (NR_027377)	-24.0	NR_027377	100045653.0	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	25.17	20.27	9.25	20.24	10.73	16.88	29.57	18.13	7.49
Merged-chr3-51483982-3	chr3	51483470	51484470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	4.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	155.6	141.0	130.42	128.2	109.16	119.76	107.73	107.0	72.45
Merged-chr7-46985888-3	chr7	46985375	46986375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033461, intron 3 of 4)	intron (NR_033461, intron 3 of 4)	9243.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	21.17	27.65	17.57	33.74	17.26	35.37	74.99	51.29	33.1
Merged-chr18-23803877-3	chr18	23803383	23804383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153058)	promoter-TSS (NM_153058)	-87.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	229.97	209.2	135.97	228.05	217.39	191.3	180.61	216.22	111.17
Merged-chr6-140624443-6	chr6	140623941	140624941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309437)	promoter-TSS (NM_001309437)	-468.0	NM_001309437	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	200.79	181.55	190.54	174.08	160.95	200.14	234.47	230.81	133.02
Merged-chr17-37524768-3	chr17	37524268	37525268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5189.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	70.93	66.35	41.62	30.36	25.66	29.74	51.75	48.2	18.11
Merged-chr9-57440100-3	chr9	57439594	57440594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	20.0	NM_176831	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	76.66	78.33	56.42	68.82	67.64	83.59	80.27	116.73	73.07
Merged-chr13-28953835-3	chr13	28953341	28954341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-142.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	30.89	14.75	11.1	30.36	23.79	24.92	12.67	6.19	8.74
Merged-chr17-17871857-3	chr17	17871381	17872381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12058.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	116.7	153.9	65.67	103.23	80.24	134.23	103.51	139.28	110.54
Merged-chr19-56548557-3	chr19	56548033	56549033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018831)	promoter-TSS (NM_018831)	272.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	252.85	230.85	156.32	258.42	305.1	210.59	243.98	275.47	126.15
Merged-chr10-119028810-3	chr10	119028304	119029304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152787, exon 4 of 4)	non-coding (NR_152787, exon 4 of 4)	21695.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	34.9	24.42	12.95	63.42	32.66	27.33	48.58	28.3	24.36
Merged-chr12-110932504-3	chr12	110932008	110933008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175336, intron 9 of 20)	B1F|SINE|Alu	43244.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	85.24	78.79	102.67	115.38	70.44	84.4	88.72	106.12	51.21
Merged-chr1-180387636-3	chr1	180387138	180388138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-57089.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	179.62	138.24	88.8	160.58	119.43	95.65	111.96	120.27	91.18
Merged-chr8-120108047-3	chr8	120107554	120108554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-6098.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	87.52	90.77	46.25	109.3	63.91	98.87	95.06	104.35	71.82
Merged-chr13-100744629-3	chr13	100744137	100745137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190264)	promoter-TSS (NM_001190264)	22.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	203.08	215.65	181.29	209.16	234.19	176.83	215.46	277.68	97.43
Merged-chr15-38299281-3	chr15	38298780	38299780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013692, intron 1 of 3)	CpG	620.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	204.8	106.9	117.47	188.25	104.03	114.14	157.37	124.25	66.82
Merged-chr7-137410647-3	chr7	137410130	137411130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029886, intron 1 of 3)	CpG	126.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	189.92	224.86	181.29	235.48	206.2	189.69	267.21	297.14	133.65
Merged-chr10-61146351-3	chr10	61145853	61146853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316674, intron 1 of 14)	CpG	1331.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	288.89	223.02	224.76	268.54	216.46	213.0	276.72	221.97	156.13
Merged-chr11-51539803-3	chr11	51539292	51540292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 5 of 28)	intron (NM_153393, intron 5 of 28)	-44965.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	7.44	4.15	3.7	0.67	1.4	3.22	3.17	5.31	2.5
Merged-chr17-29009369-3	chr17	29008856	29009856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1361.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	69.22	58.52	47.17	74.89	56.45	77.97	70.76	60.13	71.2
Merged-chr8-126758097-3	chr8	126757615	126758615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90905.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	84.66	79.25	54.57	109.3	66.71	59.48	73.93	66.33	56.21
Merged-chr10-10660153-3	chr10	10659655	10660655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54210.0	NR_033630	382450.0	Mm.422788	NR_033630	ENSMUSG00000098065	Gm5177	EG382450	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	22.31	28.57	33.3	15.52	11.2	16.88	24.29	26.97	12.49
Merged-chr1-5019378-3	chr1	5018870	5019870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	169.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	7.44	3.69	1.85	4.72	6.53	5.63	5.28	0.44	4.37
Merged-chr16-87479207-1	chr16	87478707	87479707	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024258, exon 14 of 18)	exon (NM_024258, exon 14 of 18)	16662.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	7.44	14.28	10.17	13.49	9.33	20.09	13.73	6.63	9.37
Merged-chr4-122924022-3	chr4	122923511	122924511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37177.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	22.31	26.26	20.35	29.01	18.66	37.78	12.67	19.01	26.23
Merged-chr15-51689707-3	chr15	51689196	51690196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	175765.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	26.89	17.97	15.72	19.57	11.66	11.25	24.29	9.73	6.25
Merged-chr9-94993678-1	chr9	94993178	94994178	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 9 of 15)	intron (NM_177909, intron 9 of 15)	241849.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	9.15	5.53	11.1	11.47	13.06	8.04	5.28	0.88	5.0
Merged-chr1-178406434-3	chr1	178405900	178406900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 1 of 6)	CpG	382.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	603.52	696.71	424.55	603.87	741.75	557.03	572.45	673.42	443.41
Merged-chr12-72761085-3	chr12	72760579	72761579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-132.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	523.43	446.96	326.51	531.0	472.57	336.79	457.33	398.83	237.32
Merged-chr4-134914969-3	chr4	134914448	134915448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027935)	promoter-TSS (NM_027935)	-32.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	82.95	76.49	71.22	87.71	82.57	135.04	120.41	129.11	95.55
Merged-chr2-166045194-3	chr2	166044712	166045712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	52575.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	114.98	88.93	54.57	136.97	78.37	67.52	98.23	105.68	49.96
Merged-chr8-33731869-3	chr8	33731351	33732351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167921)	promoter-TSS (NM_001167921)	-63.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	152.74	136.85	117.47	168.68	114.76	65.91	153.15	94.18	95.55
Merged-chr17-26676455-3	chr17	26676007	26677007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025272, exon 1 of 4)	exon (NM_025272, exon 1 of 4)	111.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	355.82	343.74	256.21	371.09	404.46	273.29	331.64	451.89	174.24
Merged-chr4-118999822-3	chr4	118999315	119000315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37848.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	52.06	42.39	35.15	33.06	27.06	28.13	63.37	47.75	29.35
Merged-chr14-73334050-3	chr14	73333546	73334546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-8224.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	16.59	15.67	6.47	20.24	20.53	40.19	17.96	20.78	14.36
Merged-chr13-59770358-3	chr13	59769844	59770844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026921)	promoter-TSS (NM_026921)	378.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	526.86	693.94	390.33	477.7	614.86	424.4	463.67	654.85	321.01
Merged-chrUn_JH584304-8786-1	chrUn_JH584304	8286	9286	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	50903.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	76.05	51.73	0.0
Merged-chr15-88491119-3	chr15	88490609	88491609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-109193.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	217.38	208.27	159.09	213.89	175.87	202.55	266.16	288.74	158.01
Merged-chr14-54894448-2	chr14	54893954	54894954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019402, exon 1 of 7)	exon (NM_019402, exon 1 of 7)	311.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	234.54	181.55	93.42	212.54	153.95	131.82	199.62	128.67	83.69
Merged-chr5-122614457-3	chr5	122613951	122614951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358917)	promoter-TSS (NM_001358917)	93.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	44.62	21.2	11.1	26.99	14.0	14.47	16.9	5.75	14.99
Merged-chr7-115131459-3	chr7	115130947	115131947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180173.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	6.29	11.06	11.1	13.49	4.2	8.04	6.34	1.77	9.99
Merged-chr4-139169506-3	chr4	139168995	139169995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11160.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	208.23	178.32	130.42	199.72	112.43	130.21	216.52	244.08	107.42
Merged-chr19-41341829-3	chr19	41341318	41342318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	43252.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	148.73	137.77	110.07	129.55	93.77	98.06	114.07	154.76	96.18
Merged-chr7-49078900-1	chr7	49078400	49079400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	83258.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	1.72	2.3	1.85	6.75	3.27	1.61	3.17	1.33	1.25
Merged-chr17-62576122-3	chr17	62575630	62576630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305187.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	12.59	15.67	10.17	40.48	21.46	29.74	34.85	32.28	11.24
Merged-chr7-66392717-3	chr7	66392237	66393237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053080, exon 13 of 13)	exon (NM_053080, exon 13 of 13)	-4396.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	74.94	64.05	49.02	70.17	48.98	64.3	54.92	74.28	46.22
Merged-chr10-19078282-3	chr10	19077780	19078780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62870.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	68.07	47.46	29.6	51.28	48.98	30.54	30.63	21.67	8.74
Merged-chr19-55683937-3	chr19	55683446	55684446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	MTD|LTR|ERVL-MaLR	18258.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	94.96	94.0	71.22	86.36	83.04	86.81	70.76	82.69	56.83
Merged-chr9-41160688-1	chr9	41160188	41161188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	62.35	56.22	76.77	66.12	28.46	65.11	127.8	93.3	80.56
Merged-chr1-153415164-3	chr1	153414675	153415675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-942.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	303.76	250.67	147.07	279.33	222.99	124.59	273.55	294.48	128.03
Merged-chr6-71963836-3	chr6	71963351	71964351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009088, intron 22 of 33)	intron (NM_009088, intron 22 of 33)	54798.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	42.33	17.05	29.6	16.19	8.86	4.82	14.79	13.27	9.99
Merged-chr4-59455683-3	chr4	59455171	59456171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17038.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	72.08	68.2	41.62	84.34	86.3	86.81	36.97	49.52	30.6
Merged-chr12-77238875-3	chr12	77238345	77239345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045554, exon 1 of 12)	non-coding (NR_045554, exon 1 of 12)	106.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	104.69	90.77	87.87	125.5	116.16	117.35	127.8	76.49	76.82
Merged-chr16-36636944-3	chr16	36636447	36637447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MTD|LTR|ERVL-MaLR	29130.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	108.69	78.33	52.72	109.3	77.44	81.18	95.06	114.96	66.2
Merged-chr17-70852874-4	chr17	70852374	70853374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	CpG	658.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	507.98	564.92	329.28	545.85	597.6	437.26	486.9	650.87	286.03
Merged-chr18-50087932-3	chr18	50087428	50088428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-34266.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	65.21	71.88	106.37	99.86	64.38	136.64	106.67	87.99	80.56
Merged-chr12-76552542-3	chr12	76552044	76553044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-4619.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	168.18	136.39	100.82	152.49	131.56	122.18	142.59	127.34	83.69
Merged-chr15-81399698-3	chr15	81399216	81400216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347075)	promoter-TSS (NM_001347075)	-22.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	204.22	172.33	137.82	170.03	178.21	168.8	192.23	225.51	84.31
Merged-chr10-121365047-3	chr10	121364557	121365557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029364)	promoter-TSS (NM_029364)	-33.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	423.32	367.24	321.88	429.12	474.44	352.86	356.99	392.64	254.81
Merged-chr11-64627630-1	chr11	64627130	64628130	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-190956.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	12.01	13.82	12.95	6.75	6.06	8.04	7.39	4.42	7.49
Merged-chr18-53245555-3	chr18	53245068	53246068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029394)	promoter-TSS (NM_029394)	-94.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	247.13	199.52	183.14	291.48	175.87	217.02	245.04	195.0	151.76
Merged-chr9-21724348-3	chr9	21723896	21724896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252659, intron 1 of 17)	intron (NM_001252659, intron 1 of 17)	820.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	89.24	89.39	55.5	116.05	88.64	73.95	125.69	142.38	70.57
Merged-chr2-59240198-3	chr2	59239716	59240716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79366.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	173.33	122.11	85.1	161.26	99.83	110.92	141.53	145.03	68.07
Merged-chr9-64253688-3	chr9	64253129	64254129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008927)	promoter-TSS (NM_008927)	-24.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	81.8	96.76	87.87	92.44	86.3	105.3	101.39	102.14	62.45
Merged-chr9-89224797-3	chr9	89224278	89225278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	13394.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	62.35	45.16	20.35	66.12	38.25	37.78	35.91	38.91	22.48
Merged-chr3-94595941-3	chr3	94595459	94596459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-13243.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	15.45	24.88	16.65	25.64	34.06	22.51	11.62	21.22	9.99
Merged-chrX-93689462-3	chrX	93688968	93689968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	intron (NM_211138, intron 1 of 7)	14356.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	29.75	21.2	25.9	43.86	32.66	24.92	29.57	23.43	18.74
Merged-chr12-86836866-3	chr12	86836369	86837369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47945.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	51.48	39.63	26.82	56.0	40.59	36.17	54.92	52.18	39.97
Merged-chr19-41263453-3	chr19	41262964	41263964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133352, intron 1 of 14)	CpG	540.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	447.92	314.25	384.78	358.28	227.66	328.75	347.48	198.98	246.69
Merged-chr6-113046227-3	chr6	113045732	113046732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-70.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	273.44	244.22	263.61	205.11	213.66	190.5	251.37	313.94	138.65
Merged-chr1-166138353-3	chr1	166137861	166138861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	8140.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	17.73	11.52	8.32	36.43	31.72	28.13	20.07	11.05	5.62
Merged-chr19-44314566-3	chr19	44314061	44315061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11390.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	227.11	279.24	187.77	274.61	257.51	262.84	268.27	362.58	115.54
Merged-chr14-18234998-3	chr14	18234485	18235485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4121.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	196.79	276.47	155.39	222.66	190.8	185.68	235.53	302.44	145.51
Merged-chr1-40295038-3	chr1	40294537	40295537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 5 of 10)	intron (NM_001123382, intron 5 of 10)	28451.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	145.3	113.35	86.02	127.52	106.36	63.5	99.28	98.16	56.83
Merged-chr6-53708075-3	chr6	53707555	53708555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112770.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	18.31	7.83	3.7	4.72	4.67	4.82	6.34	7.96	11.24
Merged-chr4-155568285-3	chr4	155567795	155568795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	intron (NM_001355599, intron 1 of 10)	4480.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	29.75	35.02	26.82	34.41	28.46	6.43	23.24	38.03	21.86
Merged-chr1-166002815-3	chr1	166002301	166003301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-167.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	85.81	67.74	54.57	73.54	104.96	86.81	95.06	91.09	39.97
Merged-chr3-107895823-3	chr3	107895313	107896313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010360)	promoter-TSS (NM_010360)	-41.0	NM_010360	14866.0	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	12.59	13.36	9.25	39.13	30.32	17.68	13.73	6.19	11.24
Merged-chr7-89404304-3	chr7	89403803	89404803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	-63.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	76.66	53.91	41.62	121.45	78.84	91.63	42.25	46.87	16.86
Merged-chr4-134095145-3	chr4	134094663	134095663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013706)	promoter-TSS (NM_013706)	-90.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	47.48	58.52	63.82	21.59	18.19	22.51	107.73	136.63	78.69
Merged-chr19-21066645-3	chr19	21066182	21067182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38028.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	29.17	43.31	27.75	45.88	44.78	62.7	39.08	45.1	40.59
Merged-chr13-30582740-3	chr13	30582231	30583231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32312.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	15.45	9.68	5.55	16.87	10.26	16.08	20.07	17.24	11.24
Merged-chr5-41768561-3	chr5	41768013	41769013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4293.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	7.44	9.68	1.85	12.82	4.67	3.22	7.39	11.05	0.0
Merged-chr11-97830103-3	chr11	97829604	97830604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-10676.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	343.23	250.67	124.87	339.38	317.69	233.1	284.11	338.26	133.02
Merged-chr2-27350511-3	chr2	27349999	27350999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	RMER1C|Other|Other	77109.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	137.86	111.51	93.42	130.9	67.64	85.2	71.82	72.96	58.71
Merged-chr2-117304129-3	chr2	117303626	117304626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	38751.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	85.24	81.1	73.07	51.95	36.85	52.25	91.89	91.09	79.32
Merged-chr5-100674163-3	chr5	100673555	100674555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027978, exon 1 of 7)	exon (NM_027978, exon 1 of 7)	201.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	92.1	70.04	80.47	88.39	56.91	78.77	68.65	34.49	30.6
Merged-chr4-4792833-2	chr4	4792327	4793327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177730, exon 1 of 5)	exon (NM_177730, exon 1 of 5)	479.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	151.02	118.42	108.22	132.92	120.36	99.67	152.09	86.22	70.57
Merged-chr8-111094564-3	chr8	111094068	111095068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198308)	promoter-TSS (NM_198308)	-177.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	147.59	110.13	117.47	147.76	114.29	114.94	166.88	93.3	64.33
Merged-chr11-5512523-3	chr11	5511975	5512975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-8166.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	235.11	306.42	202.56	250.32	285.04	261.23	246.09	382.47	149.26
Merged-chr1-171388995-3	chr1	171388490	171389490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	30.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	454.21	343.28	243.26	385.26	324.22	237.92	347.48	413.43	215.46
Merged-chr19-42090291-3	chr19	42089770	42090770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145501)	promoter-TSS (NM_145501)	-165.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	333.51	213.8	220.14	300.25	205.73	200.95	282.0	275.91	155.51
Merged-chr2-94438237-3	chr2	94437740	94438740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001349003)	promoter-TSS (NM_001349003)	-54.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	153.88	135.01	95.27	120.1	87.24	111.73	129.91	75.17	78.69
Merged-chr18-54846628-3	chr18	54846122	54847122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143558.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	130.43	152.06	91.57	107.28	98.43	77.16	116.18	132.65	104.92
Merged-chr8-46211075-3	chr8	46210574	46211574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007450)	promoter-TSS (NM_007450)	-12.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	51.48	30.87	31.45	55.33	31.26	24.11	32.74	21.22	14.36
Merged-chr17-46680987-3	chr17	46680488	46681488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027910)	promoter-TSS (NM_027910)	2.0	NM_001277309	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	84.66	65.89	112.84	86.36	63.91	87.61	103.51	92.41	59.95
Merged-chr6-136654296-1	chr6	136653796	136654796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7597.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	50.91	48.84	50.87	44.53	29.86	36.17	103.51	78.71	42.47
Merged-chr1-165691679-3	chr1	165691181	165692181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	16413.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	18.31	15.21	12.02	18.89	15.86	19.29	25.35	17.69	18.11
Merged-chr16-58476555-3	chr16	58476074	58477074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	46852.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	109.26	121.19	99.89	130.22	112.43	138.25	148.92	147.24	91.18
Merged-chr1-37997292-3	chr1	37996769	37997769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	-61.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	158.46	160.35	119.32	141.69	144.62	155.13	191.17	180.85	123.66
Merged-chr19-10188785-3	chr19	10188275	10189275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146094, intron 5 of 11)	intron (NM_146094, intron 5 of 11)	-2600.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	55.49	47.92	74.92	58.03	32.66	53.85	28.52	33.6	24.98
Merged-chr13-81108644-3	chr13	81108175	81109175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	144601.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	75.51	80.18	33.3	101.88	106.36	102.88	91.89	106.12	48.71
Merged-chr8-68062465-3	chr8	68061976	68062976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-87902.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	12.01	2.76	11.1	8.1	3.73	1.61	14.79	5.31	9.99
Merged-chr7-120150393-3	chr7	120149889	120150889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	15.45	13.36	4.62	16.87	11.2	11.25	20.07	14.15	12.49
Merged-chr7-105628807-3	chr7	105628304	105629304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	4767.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	25.17	24.88	20.35	15.52	7.46	12.86	14.79	15.03	13.12
Merged-chr13-62383185-3	chr13	62382679	62383679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162910)	promoter-TSS (NM_001162910)	-5.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	14.3	14.28	7.4	5.4	12.6	20.9	22.18	22.55	16.24
Merged-chr2-71367754-3	chr2	71367227	71368227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-173.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	120.7	99.53	105.44	176.1	160.01	177.64	201.73	201.63	159.25
Merged-chr2-90504200-3	chr2	90503695	90504695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25021.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	78.37	47.0	62.9	86.36	45.25	47.42	63.37	71.19	54.33
Merged-chr4-119539572-3	chr4	119539059	119540059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172699)	promoter-TSS (NM_172699)	-102.0	NM_001290696	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	307.19	220.72	270.09	342.08	224.86	185.68	275.66	178.19	166.75
Merged-chr6-99785411-3	chr6	99784898	99785898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59006.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	29.17	11.98	11.1	34.41	8.4	20.09	4.22	8.84	3.12
Merged-chr9-96376046-3	chr9	96375545	96376545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11614.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	30.89	23.5	20.35	41.16	23.79	48.23	69.71	91.53	61.2
Merged-chr16-48994096-3	chr16	48993575	48994575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356425)	promoter-TSS (NM_001356425)	37.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	264.86	227.63	157.24	237.5	229.99	154.33	215.46	209.15	126.78
Merged-chr18-52465654-3	chr18	52465164	52466164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026040)	promoter-TSS (NM_026040)	-29.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	99.54	78.79	30.52	98.51	82.11	42.6	172.16	112.31	52.46
Merged-chr6-145249509-3	chr6	145248995	145249995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 1 of 4)	CpG	736.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	258.0	203.67	179.44	224.01	164.21	165.58	273.55	147.68	138.65
Merged-chr11-100320484-3	chr11	100319987	100320987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011508, intron 1 of 3)	CpG	538.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	437.05	219.33	207.19	413.6	240.25	237.92	288.34	302.44	169.87
Merged-chr16-16358903-3	chr16	16358331	16359331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276341)	promoter-TSS (NM_001276341)	200.0	NM_152816	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	93.24	80.64	82.32	89.74	89.1	110.12	87.66	60.13	54.33
Merged-chrUn_JH584304-13975-1	chrUn_JH584304	13475	14475	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	45714.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	74.99	63.23	0.0
Merged-chr10-98881698-3	chr10	98881202	98882202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-32940.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	249.42	269.56	149.84	304.97	254.25	196.93	260.88	308.63	131.78
Merged-chr2-29624928-3	chr2	29624444	29625444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	5224.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	280.31	214.73	122.09	282.03	261.24	137.45	207.01	244.96	80.56
Merged-chr5-54013441-3	chr5	54012960	54013960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	14937.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	47.48	83.86	53.65	35.76	45.25	27.33	72.88	70.3	46.84
Merged-chr19-30033322-3	chr19	30032823	30033823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	2810.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	53.77	60.82	37.92	62.07	47.58	55.46	51.75	57.04	37.47
Merged-chr3-103857535-2	chr3	103857053	103858053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2242.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	114.98	129.02	133.19	14.84	12.13	21.7	188.0	202.07	101.8
Merged-chr11-45945013-3	chr11	45944519	45945519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028185)	promoter-TSS (NM_028185)	-84.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	29.17	16.59	6.47	33.74	27.99	32.15	29.57	19.9	10.62
Merged-chr17-88341799-3	chr17	88341301	88342301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98903.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	17.16	18.89	14.8	27.66	17.73	21.7	34.85	26.97	24.36
Merged-chr11-17003035-3	chr11	17002510	17003510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	5708.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	268.87	235.0	163.72	213.21	169.81	154.33	145.75	200.3	129.9
Merged-chr9-21022023-3	chr9	21021513	21022513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 2 of 6)	intron (NM_010493, intron 2 of 6)	6073.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	26.89	14.75	24.05	12.82	7.0	8.04	7.39	4.86	15.61
Merged-chr7-112225802-3	chr7	112225324	112226324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177282)	promoter-TSS (NM_177282)	-12.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	21.74	29.03	16.65	26.31	22.86	26.53	4.22	6.63	5.62
Merged-chr1-181247345-3	chr1	181246850	181247850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35372.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	60.64	61.28	57.35	62.75	53.65	81.18	70.76	94.18	56.83
Merged-chr10-17788680-3	chr10	17788197	17789197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-7522.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	14.87	15.21	14.8	16.19	14.46	19.29	31.69	24.76	23.73
Merged-chr13-81110357-3	chr13	81109842	81110842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	146268.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	66.36	59.44	52.72	109.3	70.91	42.6	71.82	63.67	43.72
Merged-chr11-34389672-3	chr11	34389166	34390166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025382, intron 1 of 3)	intron (NM_001025382, intron 1 of 3)	74844.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	22.31	24.42	21.27	25.64	16.33	17.68	13.73	16.36	10.62
Merged-chr4-35223636-3	chr4	35223117	35224117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2263.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	228.25	254.35	165.57	196.34	179.61	163.17	268.27	300.67	133.02
Merged-chr16-4880594-3	chr16	4880098	4881098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-747.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	352.96	276.47	260.84	322.51	287.37	245.16	259.82	345.77	206.72
Merged-chr8-69920450-3	chr8	69919963	69920963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-17905.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	317.49	318.86	149.84	221.31	232.79	138.25	255.6	308.19	119.91
Merged-chr7-101108461-3	chr7	101107958	101108958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	-317.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	99.54	50.69	45.32	83.66	48.98	65.91	88.72	43.33	67.45
Merged-chr13-113920175-1	chr13	113919675	113920675	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	125667.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	6.29	3.69	0.0	2.02	8.86	17.68	7.39	10.61	16.24
Merged-chr8-126832176-4	chr8	126831708	126832708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16812.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	508.56	387.52	245.11	480.4	323.76	351.26	403.46	508.49	205.47
Merged-chr17-45554981-3	chr17	45554480	45555480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-720.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	65.79	61.28	37.92	63.42	24.26	19.29	43.3	44.22	24.36
Merged-chr5-146248903-3	chr5	146248394	146249394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	MMAR1|DNA|TcMar-Mariner	17644.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	53.2	69.12	47.17	53.98	43.85	48.23	64.43	90.64	53.08
Merged-chr15-67903169-3	chr15	67902677	67903677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	355679.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	42.33	40.09	31.45	37.11	28.46	32.96	31.69	29.63	31.85
Merged-chr14-50944129-3	chr14	50943631	50944631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013632)	promoter-TSS (NM_013632)	-172.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	37.76	57.6	43.47	52.63	54.58	77.16	66.54	55.27	67.45
Merged-chr7-122101878-3	chr7	122101368	122102368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028177)	promoter-TSS (NM_028177)	-20.0	NM_028177	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	117.84	111.05	90.65	122.8	92.37	76.36	102.45	77.82	51.84
Merged-chr10-80105652-3	chr10	80105147	80106147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2945.0	NM_001359637	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	21.17	11.98	21.27	26.31	8.86	20.9	15.84	10.17	17.49
Merged-chr4-12083430-3	chr4	12082952	12083952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	4505.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	69.79	113.81	63.82	64.1	54.58	65.91	80.27	85.34	86.18
Merged-chr11-40692666-3	chr11	40692168	40693168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134017)	promoter-TSS (NM_134017)	14.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	106.97	90.77	86.02	104.58	102.63	120.57	108.79	113.64	74.32
Merged-chr6-47830546-3	chr6	47830056	47831056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177882)	promoter-TSS (NM_177882)	-51.0	NM_177882	330301.0	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	8.01	6.91	16.65	14.84	6.06	10.45	27.46	20.78	12.49
Merged-chr9-20544635-3	chr9	20544119	20545119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23200.0	NM_001082485	77519.0	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	37.18	40.55	42.55	29.01	25.66	23.31	29.57	22.99	23.73
Merged-chr15-28026123-3	chr15	28025629	28026629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081302)	promoter-TSS (NM_001081302)	-281.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	79.52	49.76	45.32	63.42	49.92	49.83	52.81	30.95	34.97
Merged-chr8-73314082-3	chr8	73313571	73314571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	39469.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	25.74	15.21	26.82	13.49	7.46	12.06	7.39	10.17	12.49
Merged-chr3-132035379-3	chr3	132034881	132035881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49911.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	30.32	14.75	14.8	18.22	11.66	15.27	8.45	11.05	12.49
Merged-chr9-50452611-3	chr9	50452086	50453086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41939.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	10.87	8.75	10.17	12.14	6.53	4.82	26.4	19.01	4.37
Merged-chr2-34781545-3	chr2	34781028	34782028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	9438.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	13.16	3.69	4.62	4.72	4.2	6.43	4.22	1.77	6.25
Merged-chr6-84043606-3	chr6	84043128	84044128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 3 of 54)	intron (NM_001077694, intron 3 of 54)	24242.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	258.0	267.25	156.32	365.02	270.57	196.12	341.15	403.26	134.9
Merged-chr18-62548838-3	chr18	62548334	62549334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177829)	promoter-TSS (NM_177829)	29.0	NM_134136	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	221.38	275.09	150.77	205.11	243.05	176.03	200.68	208.7	137.4
Merged-chr7-127478391-1	chr7	127477891	127478891	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6777.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	389.57	300.43	231.24	298.23	230.92	213.81	283.06	320.13	163.0
Merged-chr10-117906586-3	chr10	117906054	117907054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18905.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	268.87	221.18	156.32	297.55	264.98	213.0	255.6	387.78	168.62
Merged-chr6-128479932-3	chr6	128479459	128480459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	41202.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	4.58	4.15	0.0	6.07	3.73	3.22	2.11	2.65	3.75
Merged-chr3-69560149-3	chr3	69559661	69560661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38799.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	14.87	11.52	16.65	28.34	9.33	23.31	9.51	18.57	5.62
Merged-chr7-110796822-2	chr7	110796323	110797323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009667, intron 6 of 14)	intron (NM_009667, intron 6 of 14)	24219.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	4.58	7.83	12.02	10.12	3.73	7.23	8.45	2.65	6.25
Merged-chr4-132601493-3	chr4	132601003	132602003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	37436.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	93.24	89.39	48.1	144.39	76.97	94.85	91.89	101.26	58.71
Merged-chr6-113677558-3	chr6	113677057	113678057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 7 of 11)	intron (NM_001113553, intron 7 of 11)	-19493.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	52.06	51.61	29.6	95.14	65.31	72.34	71.82	63.23	58.71
Merged-chr15-73617821-3	chr15	73617301	73618301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357747)	promoter-TSS (NM_001357747)	-477.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	156.17	178.32	78.62	157.88	148.35	102.88	159.48	202.07	84.31
Merged-chr4-40970983-3	chr4	40970486	40971486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290449)	promoter-TSS (NM_001290449)	43.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	352.39	281.08	287.66	302.95	263.11	235.51	329.53	268.84	195.48
Merged-chr11-58008739-3	chr11	58008238	58009238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028451)	promoter-TSS (NM_028451)	-326.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	100.68	80.18	66.6	80.97	62.98	66.71	139.42	73.84	53.71
Merged-chr7-29180641-3	chr7	29180150	29181150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	23.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	145.87	129.02	61.05	109.3	88.17	58.68	162.65	159.18	79.32
Merged-chr7-24081837-3	chr7	24081337	24082337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045486)	promoter-TSS (NM_001045486)	-60.0	NM_001289640	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	36.61	32.25	49.02	35.76	30.32	47.42	64.43	46.87	36.22
Merged-chr2-79636197-3	chr2	79635697	79636697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 2 of 17)	CpG-8223	772.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	340.37	352.5	281.19	340.06	329.82	222.65	321.08	407.24	222.33
Merged-chr18-24603849-3	chr18	24603364	24604364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139143)	promoter-TSS (NM_139143)	-47.0	NM_139143	106957.0	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin|Zip6	solute carrier family 39 (metal ion transporter), member 6	protein-coding	104.69	126.25	141.52	132.92	164.21	131.02	130.97	118.06	76.19
Merged-chr13-55593140-3	chr13	55592637	55593637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026211)	promoter-TSS (NM_026211)	2.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	52.63	49.3	35.15	49.25	30.79	40.99	67.6	42.01	29.35
Merged-chr7-141131272-3	chr7	141130783	141131783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013782)	promoter-TSS (NM_013782)	-3.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	26.31	13.36	24.05	31.71	17.73	16.88	31.69	22.11	12.49
Merged-chrX-12588426-3	chrX	12587925	12588925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	666.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	196.21	229.93	121.17	164.63	216.46	113.33	159.48	211.36	97.43
Merged-chr1-93343610-3	chr1	93343123	93344123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023200)	promoter-TSS (NM_023200)	-22.0	NM_023200	66385.0	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	20.02	20.27	18.5	21.59	27.52	38.58	28.52	21.22	13.74
Merged-chr14-31641098-3	chr14	31640573	31641573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	16.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	82.38	95.84	64.75	93.11	90.5	109.32	132.02	126.9	66.2
Merged-chr9-119322847-3	chr9	119322372	119323372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045693)	promoter-TSS (NR_045693)	-445.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	439.91	433.6	275.64	377.84	391.87	327.14	392.9	442.17	204.85
Merged-chr17-65726983-3	chr17	65726484	65727484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MIR3|SINE|MIR	45768.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	164.18	194.45	128.57	161.93	146.02	147.9	249.26	249.38	119.28
Merged-chr13-65112985-3	chr13	65112518	65113518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133680)	promoter-TSS (NM_133680)	-36.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	234.54	236.38	193.32	156.53	171.68	220.24	223.91	188.36	173.62
Merged-chr6-5297567-3	chr6	5297107	5298107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	766.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	118.99	100.91	86.95	85.69	89.1	114.14	124.63	106.12	93.68
Merged-chr16-17619418-3	chr16	17618897	17619897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029945)	promoter-TSS (NM_029945)	43.0	NM_001164609	77626.0	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik	sphingomyelin phosphodiesterase 4	protein-coding	28.03	22.58	13.87	34.41	30.79	22.51	30.63	30.07	7.49
Merged-chr7-130858171-3	chr7	130857671	130858671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7553.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	83.52	68.2	35.15	91.76	69.51	55.46	86.61	79.15	49.96
Merged-chr18-53265089-3	chr18	53264593	53265593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	RLTR30D2_MM|LTR|ERV1	19431.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	225.96	262.65	152.62	278.66	253.31	186.48	223.91	277.24	141.14
Merged-chr9-114731169-3	chr9	114730680	114731680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-23.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	65.79	73.73	89.72	67.47	63.91	85.2	110.9	119.83	73.69
Merged-chr19-4147326-3	chr19	4146834	4147834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1329.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	65.79	64.97	105.44	61.4	31.26	96.45	59.15	70.75	71.82
Merged-chr6-122571481-3	chr6	122570976	122571976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17667.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	272.87	239.15	128.57	250.99	149.28	148.7	220.74	275.91	114.29
Merged-chr17-34028113-3	chr17	34027637	34028637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013543)	promoter-TSS (NM_013543)	-82.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	53.77	39.63	52.72	62.75	37.79	60.28	94.0	67.21	32.48
Merged-chr17-27547431-3	chr17	27546920	27547920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9154.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	43.48	21.2	7.4	15.52	7.93	4.82	9.51	9.73	5.0
Merged-chr7-17027405-1	chr7	17026905	17027905	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	509.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	170.47	198.14	124.87	184.2	161.41	140.66	236.59	269.72	91.18
Merged-chr7-19076065-3	chr7	19075562	19076562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010058)	promoter-TSS (NM_010058)	-138.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	32.04	14.28	42.55	17.54	11.66	23.31	70.76	37.14	41.22
Merged-chr7-43579754-5	chr7	43579197	43580197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172482, exon 1 of 4)	5' UTR (NM_172482, exon 1 of 4)	111.0	NM_001357769	210105.0	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	136.72	108.28	79.55	130.9	84.44	71.54	144.7	167.14	97.43
Merged-chr1-53855906-3	chr1	53855386	53856386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	6462.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	80.09	106.44	53.65	101.88	103.1	74.75	77.1	60.13	33.1
Merged-chr15-6386679-3	chr15	6386185	6387185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023118)	promoter-TSS (NM_023118)	-63.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	44.62	65.43	52.72	51.28	49.92	57.07	46.47	38.03	44.97
Merged-chr2-145813012-3	chr2	145812508	145813508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	26892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	75.51	42.85	61.05	74.22	38.72	55.46	58.09	34.93	52.46
Merged-chr11-102245299-3	chr11	102244799	102245799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3583.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	29.75	20.74	3.7	82.32	57.38	47.42	54.92	38.91	17.49
Merged-chr17-43138544-3	chr17	43138034	43139034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19757.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	169.33	180.17	70.3	186.22	156.28	151.11	104.56	97.28	73.07
Merged-chr1-75210800-3	chr1	75210302	75211302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011494)	promoter-TSS (NM_011494)	-24.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	167.61	177.4	130.42	114.7	118.49	96.45	121.46	123.81	73.69
Merged-chr4-62479935-3	chr4	62479434	62480434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138653)	promoter-TSS (NM_138653)	-133.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	17.73	12.44	5.55	11.47	13.06	4.82	13.73	12.82	5.0
Merged-chr15-101372154-3	chr15	101371648	101372648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2023.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	37.76	33.18	37.0	35.76	24.26	68.32	15.84	15.03	21.23
Merged-chr7-127800547-3	chr7	127800030	127801030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133943)	promoter-TSS (NM_133943)	-79.0	NM_133943	101502.0	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	18.31	16.59	35.15	26.99	18.19	28.13	27.46	20.34	18.11
Merged-chr17-33684825-3	chr17	33684341	33685341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145486)	TTS (NM_145486)	617.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	434.19	537.74	310.78	407.53	587.33	298.21	405.58	493.9	266.05
Merged-chr8-120816549-3	chr8	120816034	120817034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	77895.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	54.35	33.64	19.42	31.04	53.18	47.42	42.25	45.1	18.74
Merged-chr2-132598289-3	chr2	132597781	132598781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033469)	promoter-TSS (NR_033469)	85.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	283.17	295.82	198.87	358.28	310.69	253.19	201.73	268.4	171.12
Merged-chr15-75678807-3	chr15	75678310	75679310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-10.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	189.35	203.67	206.26	194.99	256.58	176.83	213.35	216.22	100.55
Merged-chr6-146888419-3	chr6	146887937	146888937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170433)	promoter-TSS (NM_001170433)	-57.0	NM_001355728	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	96.11	59.44	29.6	87.04	89.1	66.71	104.56	56.6	23.73
Merged-chr14-26858490-3	chr14	26858010	26859010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36094.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	9.72	15.21	1.85	14.84	13.06	11.25	13.73	17.24	11.24
Merged-chr2-148851392-3	chr2	148850905	148851905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029960)	promoter-TSS (NM_029960)	-471.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	4.0	4.61	7.4	7.42	2.33	5.63	3.17	4.86	3.75
Merged-chr18-24020421-3	chr18	24019930	24020930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357447)	promoter-TSS (NM_001357447)	-60.0	NM_001357447	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	138.44	130.4	105.44	144.39	118.96	124.59	106.67	71.63	78.07
Merged-chr1-52653561-3	chr1	52653071	52654071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MusHAL1|LINE|L1	22866.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	6.29	9.68	1.85	8.1	4.2	6.43	9.51	2.65	6.25
Merged-chr11-23895238-3	chr11	23894751	23895751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172555)	promoter-TSS (NM_172555)	19.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	45.19	47.0	41.62	35.76	55.98	45.01	51.75	49.96	39.35
Merged-chr6-34907977-3	chr6	34907472	34908472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	2859.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	141.3	92.16	49.95	161.26	100.3	84.4	78.16	80.47	43.72
Merged-chr13-67484245-3	chr13	67483747	67484747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001076791)	promoter-TSS (NM_001076791)	6.0	NM_001076791	408067.0	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	86.95	78.33	70.3	68.15	72.31	107.71	73.93	90.2	56.83
Merged-chr3-100685702-6	chr3	100685208	100686208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010763)	promoter-TSS (NM_010763)	-235.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	165.32	96.76	130.42	190.27	79.31	110.12	174.27	81.8	82.44
Merged-chr7-81849413-3	chr7	81848907	81849907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9594.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	157.89	109.21	108.22	150.46	92.84	110.92	105.62	110.1	119.91
Merged-chr8-4324756-1	chr8	4324256	4325256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_033527)	promoter-TSS (NR_033527)	344.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	284.31	226.71	192.39	227.38	200.6	198.54	202.79	144.59	153.01
Merged-chr9-66879682-3	chr9	66879185	66880185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	L1MA4|LINE|L1	40020.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	127.57	125.33	71.22	161.26	129.69	82.79	79.21	81.8	71.2
Merged-chr11-49203387-3	chr11	49202899	49203899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009562)	promoter-TSS (NM_009562)	-101.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	457.07	522.07	379.23	401.46	450.18	350.45	423.53	483.29	272.29
Merged-chr18-81585375-3	chr18	81584876	81585876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406704.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	6.29	12.44	7.4	10.8	7.93	3.22	26.4	22.11	14.99
Merged-chr5-115137751-1	chr5	115137251	115138251	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2776.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	4.58	2.3	0.0	7.42	1.4	0.8	1.06	0.44	5.0
Merged-chr11-108425145-3	chr11	108424635	108425635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029606)	promoter-TSS (NM_029606)	-131.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	28.03	22.58	9.25	23.62	8.86	16.88	22.18	14.59	11.87
Merged-chr7-30729555-3	chr7	30729053	30730053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-19.0	NM_027215	69804.0	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	81.23	104.14	61.05	100.53	92.84	99.67	116.18	91.53	51.21
Merged-chr5-135471931-3	chr5	135471428	135472428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	73194.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	262.0	246.06	112.84	257.07	262.18	195.32	190.11	219.76	114.29
Merged-chr4-44234650-3	chr4	44234156	44235156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13389.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	125.28	152.06	144.29	107.28	100.3	153.52	115.12	98.6	106.79
Merged-chr4-124709180-3	chr4	124708682	124709682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010213)	TTS (NM_010213)	-5679.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	199.07	219.79	170.19	197.02	162.81	258.02	227.08	255.13	174.87
Merged-chr19-34442238-3	chr19	34441732	34442732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32903.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	43.48	46.54	36.07	39.13	28.46	32.15	39.08	57.92	26.23
Merged-chr13-69534817-3	chr13	69534335	69535335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-971.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	314.63	268.64	194.24	335.33	283.64	237.92	179.55	155.2	78.07
Merged-chr17-88113502-3	chr17	88112907	88113907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-12105.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	130.43	114.27	55.5	120.77	101.23	70.73	89.78	125.13	44.97
Merged-chr17-84958540-3	chr17	84958038	84959038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027930)	promoter-TSS (NR_027930)	537.0	NM_001159496	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	230.54	168.65	207.19	236.83	177.27	151.92	193.28	138.4	115.54
Merged-chr1-128417365-3	chr1	128416851	128417851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177445)	promoter-TSS (NM_177445)	65.0	NM_177445	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	147.59	169.57	120.24	159.23	179.14	153.52	180.61	152.55	79.32
Merged-chr5-23999694-1	chr5	23999194	24000194	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310471, intron 2 of 10)	intron (NM_001310471, intron 2 of 10)	30618.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.0	2.76	12.02	6.07	7.46	1.61	6.34	5.31	3.75
Merged-chr17-57247846-3	chr17	57247359	57248359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308074)	promoter-TSS (NM_001308074)	-170.0	NM_030084	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	75.51	82.94	59.2	56.68	48.05	61.09	83.44	83.13	54.96
Merged-chr1-77516381-3	chr1	77515870	77516870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1282.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	3.43	3.23	0.0	3.37	1.4	3.22	5.28	0.88	2.5
Merged-chr3-108134856-3	chr3	108134335	108135335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	11317.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	10.3	3.69	12.95	6.75	10.73	12.06	12.67	7.07	7.49
Merged-chr2-133550645-3	chr2	133550131	133551131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1528.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	83.52	85.71	27.75	93.11	85.37	77.97	58.09	76.49	39.97
Merged-chr8-69654449-3	chr8	69653939	69654939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177527)	promoter-TSS (NM_001177527)	-117.0	NM_001177527	636741.0	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	37.18	27.19	31.45	48.58	53.18	75.56	25.35	19.46	31.85
Merged-chr5-96792608-3	chr5	96792113	96793113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	-772.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	30.32	42.85	54.57	31.04	35.92	38.58	53.87	47.75	49.96
Merged-chr2-166826986-3	chr2	166826495	166827495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085495, intron 2 of 38)	intron (NM_001085495, intron 2 of 38)	21414.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	76.08	64.05	29.6	74.89	77.91	59.48	48.58	65.44	34.35
Merged-chr2-32586995-3	chr2	32586518	32587518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276425)	promoter-TSS (NM_001276425)	-60.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	113.27	89.85	102.67	96.48	78.37	89.22	155.26	122.48	69.95
Merged-chr10-78298299-3	chr10	78297815	78298815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	41892.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	146.45	118.42	91.57	180.82	143.68	102.08	104.56	134.42	39.97
Merged-chr11-85352748-2	chr11	85352248	85353248	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-416.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	25.74	29.49	37.0	33.74	22.39	50.64	49.64	45.99	25.61
Merged-chr4-120879658-3	chr4	120879140	120880140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	MIR3|SINE|MIR	24841.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	78.94	52.99	44.4	72.19	64.38	44.21	41.19	53.94	38.1
Merged-chr7-80828627-3	chr7	80828118	80829118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25287.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	30.32	12.44	7.4	56.68	27.99	36.97	25.35	17.69	15.61
Merged-chr12-88445646-3	chr12	88445158	88446158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361598, intron 5 of 9)	intron (NM_001361598, intron 5 of 9)	-68335.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	37.18	45.62	37.0	54.65	32.66	49.83	52.81	40.24	32.48
Merged-chr6-113351798-3	chr6	113351297	113352297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7875.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	53.77	71.42	46.25	87.71	85.84	57.87	87.66	77.38	47.46
Merged-chr12-83688158-3	chr12	83687659	83688659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	7.0	NM_001362271	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	291.75	330.38	253.44	315.77	313.03	331.96	344.32	371.42	219.21
Merged-chr5-138683246-3	chr5	138682747	138683747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60388.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	105.26	130.4	83.25	132.92	156.28	171.21	88.72	102.58	88.06
Merged-chr9-65545802-3	chr9	65545288	65546288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34299.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	295.18	238.23	176.67	288.1	216.46	204.16	256.65	250.71	116.79
Merged-chr6-97820855-3	chr6	97820370	97821370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	13812.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	209.37	225.78	172.97	223.33	168.88	131.82	221.8	228.16	113.66
Merged-chr2-28495266-3	chr2	28494793	28495793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-1598.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	66.93	68.2	57.35	60.05	48.52	49.03	57.03	55.71	49.96
Merged-chr12-52503836-3	chr12	52503357	52504357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12220.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	127.57	88.01	84.17	151.14	65.31	90.02	164.76	68.54	58.08
Merged-chr17-22361505-4	chr17	22360949	22361949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176962)	promoter-TSS (NM_176962)	-4.0	NM_001347330	224598.0	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	88.67	118.88	86.02	96.48	99.83	93.24	96.11	91.97	66.2
Merged-chr8-129263640-3	chr8	129263141	129264141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144501)	promoter-TSS (NR_144501)	11.0	NR_144501	102635552.0		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	12.59	20.27	21.27	23.62	28.92	36.97	21.12	26.09	35.6
Merged-chr19-34270413-3	chr19	34269963	34270963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15090.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	24.6	26.26	32.37	44.53	23.79	26.53	105.62	85.78	64.95
Merged-chr4-101329297-3	chr4	101328796	101329796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17731.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	58.35	35.94	38.85	47.9	40.59	40.99	49.64	39.35	31.85
Merged-chr13-43789192-3	chr13	43788706	43789706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	4094.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	248.84	163.58	133.19	252.34	148.35	157.54	189.06	191.02	110.54
Merged-chr12-85513833-3	chr12	85513339	85514339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39949.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	4.0	3.23	3.7	6.75	2.8	3.22	10.56	6.19	3.12
Merged-chr2-71453289-3	chr2	71452789	71453789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025633)	promoter-TSS (NM_025633)	-49.0	NM_025633	66559.0	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	27.46	15.21	12.02	43.18	27.99	43.4	35.91	13.27	12.49
Merged-chr9-80067602-5	chr9	80067155	80068155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	CpG	752.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	154.45	155.28	157.24	171.38	121.76	137.45	186.94	89.32	129.9
Merged-chr4-132573547-3	chr4	132573062	132574062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	9495.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	167.61	115.66	45.32	272.59	174.47	139.86	222.86	220.2	60.58
Merged-chr14-9635685-3	chr14	9635168	9636168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-248427.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.72	4.61	1.85	7.42	6.53	4.02	4.22	3.54	3.75
Merged-chr14-31251374-3	chr14	31250837	31251837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360624)	promoter-TSS (NM_001360624)	-22.0	NR_153760	71838.0	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	355.82	349.27	228.46	331.29	273.84	217.83	302.07	307.31	191.73
Merged-chr4-40852107-3	chr4	40851605	40852605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	MIRb|SINE|MIR	-1967.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	197.36	252.51	166.49	203.76	190.34	131.02	267.21	310.84	153.01
Merged-chr1-91231976-2	chr1	91231473	91232473	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18331.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	6.29	6.45	0.0	12.14	11.66	6.43	15.84	6.19	7.49
Merged-chr13-98867959-3	chr13	98867444	98868444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23098.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	53.2	41.01	17.57	42.51	31.72	32.15	19.01	15.03	17.49
Merged-chr9-32652421-3	chr9	32651947	32652947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-43595.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.15	5.53	4.62	9.45	13.53	6.43	6.34	6.19	1.25
Merged-chr10-57794796-3	chr10	57794265	57795265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020561, exon 1 of 8)	exon (NM_020561, exon 1 of 8)	221.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	418.74	361.72	225.69	441.27	372.27	274.09	392.9	474.45	260.43
Merged-chr19-41372561-3	chr19	41372056	41373056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	12514.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	66.36	55.29	45.32	74.22	55.98	50.64	76.05	82.69	53.71
Merged-chr9-71162711-3	chr9	71162218	71163218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271843)	promoter-TSS (NM_001271843)	-85.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	17.16	12.44	5.55	13.49	9.8	6.43	17.96	12.82	12.49
Merged-chr15-27675268-3	chr15	27674727	27675727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	6315.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	144.73	107.36	60.12	102.56	79.77	90.83	72.88	69.42	37.47
Merged-chr10-95306571-1	chr10	95306071	95307071	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	17138.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.29	6.91	7.4	6.75	10.26	3.22	9.51	0.44	7.49
Merged-chr4-85005787-3	chr4	85005283	85006283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175275, intron 11 of 25)	intron (NM_175275, intron 11 of 25)	121474.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	25.17	20.74	27.75	22.94	19.13	18.49	16.9	28.74	22.48
Merged-chr9-85588272-3	chr9	85587777	85588777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161057.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	25.74	21.2	12.95	20.92	13.53	12.06	24.29	22.55	14.99
Merged-chr2-155276390-3	chr2	155275912	155276912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025735)	promoter-TSS (NM_025735)	48.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	327.79	199.98	132.27	322.51	208.53	184.07	220.74	141.94	104.3
Merged-chr17-31058939-3	chr17	31058443	31059443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	1249.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	331.22	334.53	209.04	459.48	415.66	288.56	396.07	527.95	131.15
Merged-chr14-73509948-3	chr14	73509440	73510440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-109.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	39.47	45.16	24.05	56.0	37.32	50.64	55.98	45.1	17.49
Merged-chr2-27688180-3	chr2	27687683	27688683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	10982.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	187.63	201.36	117.47	199.72	187.54	127.8	155.26	166.7	119.28
Merged-chr9-7871295-3	chr9	7870797	7871797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1873.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	284.88	317.02	234.01	248.97	233.72	217.02	334.81	393.53	189.23
Merged-chr13-74522564-3	chr13	74522066	74523066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28616.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	43.48	50.23	31.45	38.46	39.65	33.76	60.2	49.52	24.98
Merged-chr2-166996353-3	chr2	166995877	166996877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-78.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	249.99	191.69	192.39	201.74	173.07	159.95	221.8	199.42	133.65
Merged-chr1-131015571-3	chr1	131015067	131016067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4278.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	105.83	93.54	84.17	91.76	47.12	57.87	92.94	103.47	48.09
Merged-chr6-129180538-3	chr6	129180042	129181042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053109)	promoter-TSS (NM_053109)	-73.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	117.84	146.99	86.02	118.08	108.7	132.63	170.05	202.07	85.56
Merged-chr8-18936407-3	chr8	18935910	18936910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	14461.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	80.66	104.6	24.97	108.63	76.04	65.11	55.98	78.26	51.21
Merged-chrM-14244-2	chrM	13744	14744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											251.7	230.85	12.02	157.88	47.58	43.4	111.96	36.7	40.59
Merged-chr5-139460607-3	chr5	139460119	139461119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028469)	promoter-TSS (NM_028469)	-85.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	70.93	36.4	25.9	56.0	45.72	26.53	44.36	47.31	21.23
Merged-chr9-87171680-3	chr9	87171151	87172151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101482, intron 2 of 3)	B3|SINE|B2	22423.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	50.91	57.6	25.9	101.21	75.57	57.07	35.91	46.43	34.97
Merged-chr2-104122725-3	chr2	104122212	104123212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026634)	promoter-TSS (NM_026634)	-57.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	14.3	11.06	9.25	13.49	14.46	8.04	10.56	7.52	5.0
Merged-chr4-150566388-3	chr4	150565895	150566895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	85779.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	76.66	73.26	55.5	80.97	60.18	78.77	60.2	79.15	39.35
Merged-chr11-50131391-3	chr11	50130922	50131922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	62.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	334.08	240.53	122.09	319.14	256.58	189.69	308.41	224.18	126.15
Merged-chr2-164822933-3	chr2	164822438	164823438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178375)	TTS (NM_178375)	252.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	62.35	57.14	64.75	61.4	42.92	62.7	49.64	60.58	32.48
Merged-chr11-79253373-3	chr11	79252876	79253876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	1319.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	204.22	188.0	82.32	192.29	171.68	160.76	190.11	225.51	90.56
Merged-chr5-5367708-3	chr5	5367192	5368192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	12559.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	87.52	159.89	61.05	130.22	165.61	114.94	175.33	195.0	102.42
Merged-chr3-103017528-3	chr3	103017019	103018019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3027.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	54.92	47.46	35.15	43.18	44.78	29.74	42.25	58.37	38.72
Merged-chr5-123907141-3	chr5	123906648	123907648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-127.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	311.77	268.18	186.84	286.08	212.73	189.69	224.97	270.16	121.16
Merged-chr3-106548398-3	chr3	106547904	106548904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-602.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	240.83	207.35	144.29	277.31	246.78	205.77	261.93	334.28	125.53
Merged-chr13-104287039-3	chr13	104286550	104287550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081020)	promoter-TSS (NM_001081020)	-785.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	102.4	63.13	23.12	107.28	62.98	40.99	122.52	127.79	63.08
Merged-chr5-139015188-3	chr5	139014671	139015671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20218.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	97.25	75.57	81.4	111.33	83.97	102.88	120.41	94.18	62.45
Merged-chr11-98810079-1	chr11	98809579	98810579	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	10.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	243.12	188.92	187.77	246.95	189.4	186.48	307.35	319.69	114.91
Merged-chr13-38528454-3	chr13	38527992	38528992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-8.0	NM_145367	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	137.86	118.88	102.67	181.5	141.35	151.11	138.36	63.23	84.94
Merged-chr4-127077470-3	chr4	127076966	127077966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285885)	promoter-TSS (NM_001285885)	83.0	NM_001285887	100177.0	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	112.69	124.87	111.92	95.14	100.3	132.63	153.15	123.81	76.82
Merged-chrX-101222498-3	chrX	101221910	101222910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018875, exon 1 of 5)	exon (NM_018875, exon 1 of 5)	153.0	NM_001110311	55988.0	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	42.33	30.87	31.45	59.38	36.85	52.25	70.76	34.05	21.86
Merged-chr1-13256377-3	chr1	13255873	13256873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 2 of 22)	intron (NM_008678, intron 2 of 22)	116056.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	8.01	5.99	3.7	4.72	3.73	9.65	28.52	26.97	24.36
Merged-chr7-38071252-2	chr7	38070756	38071756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36234.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	11.44	21.2	9.25	11.47	9.8	9.65	4.22	7.52	1.25
Merged-chr15-64088565-3	chr15	64088046	64089046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28098.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	100.11	121.65	101.74	122.8	101.23	141.47	51.75	102.58	53.08
Merged-chr15-83033345-3	chr15	83032841	83033841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	56.0	NM_001271412	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	64.07	72.34	58.27	49.25	52.72	86.81	99.28	76.05	74.94
Merged-chr19-44582849-3	chr19	44582345	44583345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19991.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	5.72	2.76	5.55	3.37	0.47	0.0	3.17	0.0	4.37
Merged-chr5-150599688-3	chr5	150599187	150600187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362416)	TTS (NM_001362416)	-5162.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	151.59	150.22	78.62	102.56	96.57	81.99	164.76	186.59	69.95
Merged-chr12-110888303-3	chr12	110887809	110888809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081057)	promoter-TSS (NM_001081057)	836.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	163.04	99.07	34.22	172.05	97.97	63.5	156.32	151.66	54.96
Merged-chr16-17182352-3	chr16	17181847	17182847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	19145.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	145.3	121.19	72.15	124.82	83.04	121.37	123.57	110.1	86.81
Merged-chr9-99243350-3	chr9	99242840	99243840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023873)	promoter-TSS (NM_023873)	-1.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	100.11	88.93	82.32	111.33	131.56	86.81	123.57	105.68	58.71
Merged-chr2-4555422-3	chr2	4554917	4555917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-4337.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	70.36	85.25	70.3	69.5	70.91	63.5	83.44	90.64	64.95
Merged-chr11-4232832-1	chr11	4232332	4233332	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3953.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	4.0	2.76	1.85	39.13	26.12	6.43	4.22	0.44	7.49
Merged-chr9-61946877-3	chr9	61946360	61947360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024245)	promoter-TSS (NM_024245)	-61.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	108.69	111.51	81.4	65.45	68.11	51.44	61.26	59.69	40.59
Merged-chr1-45865915-3	chr1	45865413	45866413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59681.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	132.72	159.43	120.24	143.71	103.56	137.45	164.76	226.39	127.4
Merged-chr19-5712134-3	chr19	5711627	5712627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	7656.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	46.34	39.63	41.62	27.66	27.06	53.85	40.14	38.03	33.72
Merged-chrX-13506566-3	chrX	13506075	13507075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38903.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	16.59	7.83	20.35	21.59	8.4	17.68	27.46	14.15	15.61
Merged-chr5-141080532-3	chr5	141080035	141081035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-79939.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	201.36	196.75	110.99	185.55	153.48	127.0	177.44	192.78	75.57
Merged-chr17-24478888-3	chr17	24478401	24479401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252463, intron 1 of 8)	CpG	177.0	NM_001252464	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	254.56	198.6	128.57	279.33	181.94	183.26	173.21	160.06	100.55
Merged-chr1-16798489-3	chr1	16797991	16798991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110035.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	32.04	39.63	24.97	31.71	23.79	29.74	35.91	31.84	18.11
Merged-chr8-126667065-3	chr8	126666563	126667563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73627.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	88.67	64.97	40.7	82.32	63.45	84.4	60.2	49.96	39.97
Merged-chr2-69713502-3	chr2	69713003	69714003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177244)	promoter-TSS (NM_177244)	-897.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	22.31	23.5	22.2	28.34	27.99	33.76	40.14	31.39	24.36
Merged-chr10-118820062-3	chr10	118819575	118820575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48828.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	33.18	23.5	12.02	49.93	32.19	35.37	34.85	34.93	21.86
Merged-chr3-96580321-3	chr3	96579825	96580825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027241, intron 5 of 7)	intron (NM_027241, intron 5 of 7)	-13524.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	66.36	47.92	34.22	77.59	30.79	52.25	64.43	50.41	33.72
Merged-chr11-103404010-3	chr11	103403514	103404514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	8650.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	108.69	71.42	94.35	141.69	99.37	86.01	162.65	145.92	72.45
Merged-chr12-31634663-3	chr12	31634178	31635178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164090)	promoter-TSS (NM_001164090)	-20.0	NM_001164090	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	189.92	150.22	123.02	190.27	188.0	118.96	200.68	163.16	67.45
Merged-chr18-5334369-3	chr18	5333826	5334826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	CpG	113.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	355.25	401.34	240.49	360.97	348.02	238.73	363.33	330.3	187.98
Merged-chr18-25168881-3	chr18	25168386	25169386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142698)	promoter-TSS (NM_001142698)	-9.0	NM_001004361	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	56.63	60.36	88.8	45.88	43.85	77.97	60.2	52.18	52.46
Merged-chr2-159557708-3	chr2	159557219	159558219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-389622.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	5.72	6.91	7.4	4.72	8.86	4.82	12.67	9.29	5.62
Merged-chr4-46452480-4	chr4	46452000	46453000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	1574.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	181.34	83.4	169.27	168.68	99.83	161.56	227.08	105.68	83.06
Merged-chr7-126487269-3	chr7	126486762	126487762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-93.0	NM_172745	233870.0	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	146.45	141.46	136.89	101.21	97.03	104.49	132.02	122.92	79.94
Merged-chr4-150488318-3	chr4	150487822	150488822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163852.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	197.93	218.87	135.04	211.19	227.19	157.54	159.48	209.15	96.18
Merged-chr13-51846596-3	chr13	51846097	51847097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-78.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	137.29	148.83	98.97	147.76	108.23	121.37	160.54	154.76	129.28
Merged-chr10-118981271-1	chr10	118980771	118981771	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-54128.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	16.59	28.57	3.7	36.43	16.33	22.51	21.12	17.69	6.87
Merged-chr16-91834240-3	chr16	91833763	91834763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 16 of 28)	URR1B|DNA|hAT-Charlie	97367.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	46.91	45.16	63.82	66.12	48.05	63.5	97.17	98.6	48.09
Merged-chr17-3114954-3	chr17	3114440	3115440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-32.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	240.83	229.47	167.42	228.05	249.12	154.33	223.91	162.28	105.55
Merged-chr15-64082439-1	chr15	64081939	64082939	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21991.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	53.2	60.36	94.35	64.1	61.58	73.95	49.64	61.02	46.84
Merged-chr17-56585339-3	chr17	56584827	56585827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	345.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	323.78	275.55	161.87	250.32	209.93	168.8	200.68	172.89	133.02
Merged-chr7-25619369-3	chr7	25618867	25619867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025504)	promoter-TSS (NM_025504)	-47.0	NM_001290487	66349.0	Mm.159956	NM_025504	ENSMUSG00000057229	Dmac2	2310004L02Rik|Atp5sl|C030044E10Rik	distal membrane arm assembly complex 2	protein-coding	25.74	22.58	20.35	48.58	36.85	32.96	44.36	49.52	20.61
Merged-chr5-101997521-3	chr5	101997037	101998037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	72384.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	74.37	70.04	36.07	91.09	73.71	47.42	92.94	73.84	41.22
Merged-chr2-159593019-3	chr2	159592514	159593514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-354327.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	33.75	30.41	26.82	51.28	24.26	25.72	21.12	9.29	23.11
Merged-chr10-20990805-3	chr10	20990325	20991325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358561, intron 15 of 22)	intron (NM_001358561, intron 15 of 22)	38278.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	17.16	12.9	12.02	15.52	9.8	18.49	8.45	14.15	8.74
Merged-chr6-97504946-3	chr6	97504465	97505465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-17145.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	23.45	14.75	19.42	10.8	8.4	16.08	35.91	26.09	25.61
Merged-chr18-34861099-7	chr18	34860589	34861589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007913)	promoter-TSS (NM_007913)	-118.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	176.76	102.29	125.79	186.22	107.76	143.07	155.26	127.34	106.79
Merged-chr3-67576460-3	chr3	67575939	67576939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6329.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	11.44	4.61	7.4	8.1	9.33	8.84	10.56	11.94	3.75
Merged-chrUn_JH584304-17378-1	chrUn_JH584304	16878	17878	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	42311.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	41.19	51.73	0.0
Merged-chr4-136123226-3	chr4	136122740	136123740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20582.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	201.36	115.66	105.44	170.7	102.17	143.88	209.12	167.14	92.43
Merged-chr6-134897446-1	chr6	134896946	134897946	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029441)	promoter-TSS (NR_029441)	379.0	NM_001167695	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	46.91	49.76	71.22	49.93	41.99	72.34	73.93	77.82	67.45
Merged-chr16-14135222-3	chr16	14134721	14135721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 13 of 26)	ORR1B2|LTR|ERVL-MaLR	24053.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	54.92	62.67	67.52	56.68	55.51	57.07	47.53	53.5	46.22
Merged-chr9-57130730-3	chr9	57130222	57131222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028636)	promoter-TSS (NM_028636)	-55.0	NM_028636	73744.0	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	242.55	209.66	288.59	192.29	282.7	230.69	179.55	195.0	199.85
Merged-chr7-99535038-3	chr7	99534546	99535546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177231)	promoter-TSS (NM_177231)	-440.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	61.21	26.26	50.87	41.83	27.52	53.05	42.25	27.86	28.73
Merged-chr12-9006296-3	chr12	9005810	9006810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 14 of 27)	intron (NM_172470, intron 14 of 27)	-23687.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	27.46	35.94	43.47	43.18	47.58	25.72	30.63	25.65	19.36
Merged-chr19-4070902-3	chr19	4070396	4071396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-11449.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	81.23	45.16	51.8	68.15	59.25	54.66	54.92	40.24	47.46
Merged-chr9-107542097-3	chr9	107541583	107542583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019720)	promoter-TSS (NM_019720)	110.0	NM_001357290	56368.0	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	26.31	32.25	27.75	37.78	35.45	43.4	44.36	30.95	21.86
Merged-chr16-90810508-3	chr16	90809995	90810995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029497)	promoter-TSS (NM_029497)	-82.0	NM_029497	207932.0	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	55.49	55.29	41.62	61.4	59.25	44.21	52.81	42.45	30.6
Merged-chr5-74531803-3	chr5	74531341	74532341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178672)	promoter-TSS (NM_178672)	-99.0	NM_001114660	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	60.64	60.82	42.55	69.5	64.84	61.89	79.21	71.63	51.21
Merged-chr13-101844213-3	chr13	101843715	101844715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75998.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	47.48	51.61	28.67	50.6	60.65	62.7	69.71	67.21	46.22
Merged-chr6-88108227-3	chr6	88107706	88108706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3948.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	21.17	9.68	12.95	17.54	12.13	19.29	10.56	8.84	9.37
Merged-chr2-26360984-3	chr2	26360500	26361500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1453.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	31.46	21.2	43.47	30.36	19.59	45.82	33.8	25.65	15.61
Merged-chr12-40626695-3	chr12	40626191	40627191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 4 of 52)	intron (NM_172803, intron 4 of 52)	180638.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	38.33	30.41	11.1	41.83	22.86	17.68	22.18	29.18	21.86
Merged-chr15-101190944-3	chr15	101190456	101191456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	MIR3|SINE|MIR	-2913.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	241.41	206.43	125.79	252.34	211.79	176.03	184.83	238.33	107.42
Merged-chr6-134796553-3	chr6	134796032	134797032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151455, exon 1 of 2)	non-coding (NR_151455, exon 1 of 2)	882.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	62.35	58.52	25.9	46.56	31.72	25.72	39.08	39.35	29.35
Merged-chr6-47778530-3	chr6	47777993	47778993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25159.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	16.02	12.9	7.4	9.45	5.6	12.06	31.69	33.6	14.99
Merged-chr4-130902395-3	chr4	130901897	130902897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10937.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	74.94	70.96	46.25	78.27	37.32	69.93	110.9	66.33	42.47
Merged-chr2-172370635-3	chr2	172370231	172371231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291185)	promoter-TSS (NM_001291185)	-161.0	NM_011497	20878.0	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	97.82	103.22	87.87	89.74	72.78	101.28	135.19	82.24	52.46
Merged-chr17-28260093-3	chr17	28259589	28260589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-11619.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	132.72	111.51	86.95	176.78	161.41	109.32	173.21	163.6	91.18
Merged-chr17-45556807-3	chr17	45556233	45557233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1033.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	297.47	240.07	195.17	240.87	139.02	204.97	243.98	241.87	164.25
Merged-chr3-152478187-3	chr3	152477669	152478669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	81485.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	73.22	80.64	95.27	78.27	74.64	99.67	91.89	99.49	53.08
Merged-chr10-22301773-3	chr10	22301271	22302271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	ORR1C1|LTR|ERVL-MaLR	-4949.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	181.91	154.82	146.14	185.55	106.36	184.07	133.08	94.18	84.31
Merged-chr5-135369963-3	chr5	135369456	135370456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145414)	promoter-TSS (NM_145414)	3.0	NM_145414	100609.0	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	61.78	72.34	52.72	63.42	82.57	74.75	97.17	72.96	70.57
Merged-chr2-5714903-1	chr2	5714403	5715403	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177343)	promoter-TSS (NM_177343)	-141.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	120.7	61.28	61.97	116.05	62.05	81.99	89.78	64.11	34.35
Merged-chr5-18000340-3	chr5	17999853	18000853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37783.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	120.7	145.61	45.32	119.43	158.15	84.4	110.9	131.77	91.81
Merged-chr7-5101482-3	chr7	5101026	5102026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15385.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	30.32	43.31	33.3	31.71	27.06	39.39	25.35	36.26	49.96
Merged-chr5-23874658-3	chr5	23874163	23875163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22430.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	22.88	12.44	12.95	27.66	19.13	16.08	35.91	25.2	12.49
Merged-chr19-27429927-3	chr19	27429457	27430457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131940)	promoter-TSS (NR_131940)	-49.0	NR_131940	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	108.12	117.96	74.0	103.23	111.03	127.0	132.02	121.15	77.44
Merged-chr16-24393096-5	chr16	24392660	24393660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178665)	promoter-TSS (NM_178665)	-190.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	234.54	172.33	138.74	205.79	156.75	162.37	200.68	118.06	103.05
Merged-chr15-66856723-3	chr15	66856232	66857232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24903.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	18.88	15.21	12.02	31.04	19.59	25.72	27.46	26.09	16.86
Merged-chr3-144198704-3	chr3	144198208	144199208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161769, intron 2 of 4)	CpG	3624.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	38.9	18.43	31.45	35.76	10.26	14.47	30.63	23.88	19.98
Merged-chr9-40800130-3	chr9	40799615	40800615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	454.21	534.97	253.44	454.08	482.84	363.31	411.91	579.24	242.94
Merged-chr14-67072072-3	chr14	67071568	67072568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360034, intron 1 of 8)	CpG	403.0	NM_001360034	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	244.84	214.73	175.74	217.26	221.13	163.17	216.52	175.1	125.53
Merged-chr17-50025328-3	chr17	50024858	50025858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165139.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	133.29	89.39	54.57	141.69	115.69	111.73	124.63	99.93	69.32
Merged-chr5-149247282-3	chr5	149246790	149247790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17714.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	160.75	140.08	147.99	116.05	95.63	130.21	133.08	153.43	111.17
Merged-chr7-127297327-3	chr7	127296830	127297830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253873, intron 1 of 30)	intron (NM_001253873, intron 1 of 30)	1070.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	87.52	69.58	61.05	53.3	47.58	91.63	72.88	56.16	47.46
Merged-chr13-113548153-3	chr13	113547658	113548658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45314.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	62.93	62.21	42.55	61.4	52.72	26.53	52.81	51.73	17.49
Merged-chr5-145191576-3	chr5	145191076	145192076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020582)	promoter-TSS (NM_020582)	16.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	169.33	143.76	125.79	117.4	155.81	143.07	164.76	141.49	91.18
Merged-chr1-155083581-3	chr1	155083063	155084063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151545)	promoter-TSS (NR_151545)	-299.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	89.81	47.46	45.32	89.74	42.92	33.76	71.82	54.39	19.98
Merged-chr9-21760416-3	chr9	21759951	21760951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026282)	promoter-TSS (NM_026282)	-148.0	NM_001357331	67629.0	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	24.03	23.96	4.62	37.78	19.59	22.51	27.46	18.57	8.12
Merged-chr13-23534946-2	chr13	23534435	23535435	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-483.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	19.45	47.0	12.95	33.74	30.32	21.7	36.97	63.67	32.48
Merged-chr10-80075456-3	chr10	80074928	80075928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359636)	promoter-TSS (NM_001359636)	11.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	319.78	228.09	189.62	263.14	206.2	163.97	257.71	306.86	178.61
Merged-chr11-73047792-3	chr11	73047290	73048290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025818)	promoter-TSS (NM_025818)	-77.0	NM_025818	66874.0	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	122.42	125.79	111.92	91.76	111.96	75.56	106.67	93.74	51.84
Merged-chr2-18976409-3	chr2	18975913	18976913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	21708.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	40.62	49.3	34.22	28.34	27.99	37.78	25.35	29.18	36.85
Merged-chr4-104949079-1	chr4	104948579	104949579	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104376, intron 3 of 20)	intron (NR_104376, intron 3 of 20)	35623.0	NM_001285952	242594.0	Mm.65181	NM_001162980	ENSMUSG00000078612	Fyb2	1700024P16Rik|ARAP|C1orf168|Gm620	FYN binding protein 2	protein-coding	4.0	5.07	1.85	6.07	1.87	1.61	3.17	2.21	1.25
Merged-chr14-66242916-3	chr14	66242424	66243424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-29100.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	86.95	85.25	137.82	90.41	59.71	75.56	85.55	88.88	62.45
Merged-chr9-54950682-3	chr9	54950150	54951150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011966)	promoter-TSS (NM_011966)	-209.0	NM_011966	26441.0	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	97.25	123.49	100.82	105.26	103.1	143.07	99.28	116.73	76.82
Merged-chr14-17479105-1	chr14	17478605	17479605	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181855.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.72	1.38	1.85	1.35	0.93	4.82	1.06	3.54	4.37
Merged-chr14-20388928-3	chr14	20388419	20389419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134081)	promoter-TSS (NM_134081)	-9.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	24.03	29.49	31.45	29.69	32.19	27.33	36.97	32.28	28.73
Merged-chr13-100449657-3	chr13	100449158	100450158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	Lx8|LINE|L1	3206.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	14.87	11.06	15.72	12.14	13.06	13.66	43.3	33.6	30.6
Merged-chr2-117080549-3	chr2	117080053	117081053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40518.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	27.46	25.34	1.85	22.27	13.53	9.65	23.24	8.84	14.99
Merged-chr16-21793495-3	chr16	21793009	21794009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-838.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	208.23	205.51	120.24	239.52	190.34	139.06	227.08	257.34	104.92
Merged-chr7-4445638-3	chr7	4445105	4446105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290409)	promoter-TSS (NM_001290409)	52.0	NM_175372	108841.0	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	16.59	20.74	17.57	26.31	13.06	26.53	36.97	23.43	13.74
Merged-chr7-73537889-3	chr7	73537386	73538386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	CpG	3860.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	368.97	294.44	172.97	330.61	309.3	183.26	312.63	349.31	132.4
Merged-chr13-65112134-3	chr13	65111655	65112655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	827.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	153.31	152.06	128.57	95.14	112.9	118.96	121.46	103.02	114.29
Merged-chr4-33265447-3	chr4	33264960	33265960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-16673.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	20.02	21.2	33.3	20.92	14.0	25.72	14.79	12.82	8.74
Merged-chr19-46503425-3	chr19	46502933	46503933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	UCON4|Unknown|Unknown	1785.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	315.2	203.21	207.19	274.61	173.54	203.36	255.6	221.08	148.01
Merged-chr6-143167165-3	chr6	143166666	143167666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029250)	promoter-TSS (NM_029250)	-64.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	401.58	312.41	272.86	360.3	271.51	231.49	369.66	279.01	157.38
Merged-chr13-80883341-3	chr13	80882824	80883824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153410)	promoter-TSS (NR_153410)	-60.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	150.45	128.56	104.52	155.86	158.61	111.73	155.26	238.77	98.05
Merged-chr14-102924836-3	chr14	102924356	102925356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57776.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	113.84	103.68	93.42	87.04	54.11	93.24	106.67	124.25	88.06
Merged-chr5-32714057-3	chr5	32713609	32714609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32233.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	132.14	171.41	114.69	129.55	128.76	90.02	210.18	260.88	99.3
Merged-chr14-25747671-3	chr14	25747128	25748128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	21228.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	24.03	34.1	31.45	53.98	28.46	38.58	36.97	22.11	24.98
Merged-chr11-79223624-3	chr11	79223125	79224125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19399.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	68.07	51.15	28.67	71.52	39.65	53.05	99.28	120.27	67.45
Merged-chr3-106553582-3	chr3	106553085	106554085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286986, intron 2 of 8)	intron (NM_001286986, intron 2 of 8)	-5783.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	225.96	230.39	111.92	198.37	158.61	183.26	171.1	164.49	119.28
Merged-chr10-17383149-3	chr10	17382640	17383640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-287358.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	19.45	14.28	11.1	12.14	13.53	14.47	13.73	9.73	8.74
Merged-chr17-34972673-2	chr17	34972160	34973160	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013558)	promoter-TSS (NM_013558)	-43.0	NM_013558	15482.0	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	252.85	197.68	135.97	221.98	175.87	98.06	159.48	198.53	89.31
Merged-chr18-46179440-3	chr18	46178938	46179938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 4 of 9)	intron (NM_178872, intron 4 of 9)	19380.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	22.88	26.26	14.8	14.84	26.12	12.06	17.96	33.6	25.61
Merged-chr11-76763615-3	chr11	76763106	76764106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016810)	promoter-TSS (NM_016810)	-28.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	180.2	162.66	102.67	199.72	161.41	153.52	229.19	272.82	128.65
Merged-chr7-118277643-3	chr7	118277126	118278126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33719.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	187.06	177.4	142.44	179.47	122.23	131.82	179.55	192.34	115.54
Merged-chr13-34994209-3	chr13	34993704	34994704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-60.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	159.6	170.95	119.32	143.71	148.82	155.13	159.48	146.36	141.77
Merged-chr3-122294061-3	chr3	122293549	122294549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030439)	promoter-TSS (NR_030439)	-346.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	104.11	104.6	42.55	85.01	71.38	44.21	50.7	30.07	40.59
Merged-chr19-24284387-3	chr19	24283902	24284902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-3816.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	8.58	11.06	1.85	8.1	5.13	6.43	5.28	3.1	5.0
Merged-chr14-33447294-3	chr14	33446788	33447788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016700)	promoter-TSS (NM_016700)	-130.0	NM_016700	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	178.48	88.01	72.15	136.97	82.57	47.42	114.07	66.33	43.72
Merged-chr10-44632143-1	chr10	44631643	44632643	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173395.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	206.51	166.34	137.82	224.01	189.4	191.3	202.79	197.21	113.04
Merged-chr11-20159154-3	chr11	20158635	20159635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42277.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	6.29	6.45	5.55	16.19	8.86	9.65	4.22	3.98	10.62
Merged-chr1-172643809-3	chr1	172643284	172644284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-10810.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	41.76	33.64	14.8	46.56	25.19	23.31	30.63	30.95	16.24
Merged-chr10-53630104-3	chr10	53629576	53630576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027830, exon 2 of 14)	exon (NM_027830, exon 2 of 14)	363.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	158.46	114.74	117.47	137.64	90.97	77.16	165.82	119.83	68.07
Merged-chr8-57589444-3	chr8	57588944	57589944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-62309.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	34.9	20.74	12.02	20.92	14.93	17.68	26.4	16.8	9.37
Merged-chr8-22476517-2	chr8	22475981	22476981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011394)	promoter-TSS (NM_011394)	-219.0	NM_011394	20516.0	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	194.5	117.04	130.42	191.62	129.22	126.19	155.26	93.74	71.82
Merged-chr19-4793994-3	chr19	4793493	4794493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290122)	promoter-TSS (NM_001290122)	16.0	NM_001290124	19653.0	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	101.83	111.97	61.97	82.99	63.91	102.08	125.69	113.64	78.69
Merged-chr15-74918626-3	chr15	74918117	74919117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36434.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	32.04	35.48	37.92	9.45	10.73	9.65	69.71	53.06	32.48
Merged-chr11-5838020-3	chr11	5837532	5838532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017401)	promoter-TSS (NM_017401)	-16.0	NM_017401	54125.0	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	52.06	49.3	39.77	39.81	41.99	75.56	61.26	36.7	56.21
Merged-chr11-116424248-3	chr11	116423749	116424749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9845.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	348.95	287.07	216.44	306.32	216.93	162.37	278.83	342.68	197.35
Merged-chr18-5334927-3	chr18	5334421	5335421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178722)	promoter-TSS (NM_178722)	-114.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	181.91	153.9	115.62	180.82	103.56	104.49	192.23	144.15	90.56
Merged-chr6-99435359-3	chr6	99434857	99435857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053202)	promoter-TSS (NM_053202)	-12.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	24.6	27.19	15.72	43.18	14.46	32.96	19.01	7.52	10.62
Merged-chr4-55623588-3	chr4	55623096	55624096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91121.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	56.63	44.7	41.62	51.95	40.59	56.27	42.25	51.73	51.84
Merged-chr3-149326888-3	chr3	149326384	149327384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52147.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	52.06	58.52	15.72	47.23	33.12	16.88	57.03	34.49	18.74
Merged-chr8-83608117-3	chr8	83607648	83608648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018808)	promoter-TSS (NM_018808)	-27.0	NM_018808	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	177.34	149.75	167.42	169.35	120.36	159.15	155.26	144.15	158.01
Merged-chr2-165326568-3	chr2	165326062	165327062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207706)	promoter-TSS (NM_207706)	-83.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	82.38	68.66	85.1	103.91	65.78	80.38	100.34	93.3	40.59
Merged-chr15-50698669-1	chr15	50698169	50699169	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	190380.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	39.47	41.47	11.1	62.75	36.85	20.9	36.97	43.33	16.86
Merged-chr17-70992534-2	chr17	70992043	70993043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2027.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	164.75	180.17	112.84	170.7	131.09	147.09	89.78	73.84	61.83
Merged-chr13-101592535-3	chr13	101592038	101593038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100092.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	10.87	5.99	0.0	6.75	0.93	0.0	7.39	0.88	1.87
Merged-chr14-27355233-3	chr14	27354717	27355717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	L1MC4a|LINE|L1	-6172.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	50.91	46.08	61.05	80.29	45.72	53.05	88.72	57.48	49.34
Merged-chr1-191182485-3	chr1	191181988	191182988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	CpG	845.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	327.79	295.36	230.31	329.94	298.57	192.11	277.78	288.29	136.15
Merged-chr3-105825839-3	chr3	105825322	105826322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10255.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	100.68	71.42	45.32	97.16	50.85	61.09	123.57	112.31	65.58
Merged-chr5-148559623-3	chr5	148559147	148560147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-6859.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	33.75	31.33	24.05	48.58	18.19	33.76	72.88	68.98	48.09
Merged-chr3-105017604-3	chr3	105017089	105018089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	35364.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	152.17	160.81	111.92	107.95	79.31	85.2	103.51	87.55	46.84
Merged-chr6-142747401-3	chr6	142746898	142747898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9288.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	208.8	212.88	117.47	192.29	205.73	174.42	176.38	239.65	127.4
Merged-chr8-120716216-3	chr8	120715713	120716713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20145.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	169.9	135.47	78.62	193.64	143.68	99.67	168.99	185.27	88.06
Merged-chr2-77342131-3	chr2	77341615	77342615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61523.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	1.72	3.69	1.85	2.7	4.67	1.61	1.06	3.1	1.25
Merged-chr1-144242029-3	chr1	144241572	144242572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	7032.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	20.02	7.83	0.92	10.8	5.13	4.02	6.34	0.88	4.37
Merged-chr3-145924944-3	chr3	145924468	145925468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	CpG	706.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	275.73	296.28	280.26	259.77	286.44	236.31	256.65	300.67	190.48
Merged-chr14-103007945-3	chr14	103007435	103008435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	Lx10|LINE|L1	-25298.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	34.9	20.74	14.8	37.78	21.46	20.09	29.57	33.16	26.23
Merged-chr17-73952347-3	chr17	73951811	73952811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2115.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	80.66	85.25	71.22	85.69	68.11	83.59	95.06	106.12	76.19
Merged-chr5-72559639-4	chr5	72559037	72560037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 1 of 21)	CpG	108.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	122.99	111.51	99.89	97.83	77.44	92.44	114.07	91.09	113.66
Merged-chr11-54866477-4	chr11	54865896	54866896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008248)	promoter-TSS (NM_008248)	13.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	169.33	126.72	112.84	215.23	131.56	141.47	134.14	109.66	54.33
Merged-chr19-7039507-3	chr19	7039042	7040042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016737, intron 1 of 13)	CpG	484.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	162.46	104.14	90.65	163.96	141.82	86.81	130.97	118.06	85.56
Merged-chr11-17005745-3	chr11	17005208	17006208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	3010.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	251.7	246.06	139.67	247.62	165.61	206.57	226.02	267.07	127.4
Merged-chr7-125554606-3	chr7	125554115	125555115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	2333.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	124.14	109.67	88.8	65.45	47.58	45.01	147.87	133.98	79.32
Merged-chr4-136117253-3	chr4	136116738	136117738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26584.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	81.23	66.81	38.85	132.24	94.23	113.33	90.83	84.45	63.7
Merged-chr7-25181645-3	chr7	25181138	25182138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26569.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	6.86	1.38	5.55	8.1	1.4	0.0	3.17	2.21	6.87
Merged-chr3-97159260-1	chr3	97158760	97159760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_019800, exon 1 of 10)	exon (NM_019800, exon 1 of 10)	483.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	75.51	90.77	89.72	84.34	95.63	110.12	124.63	123.36	53.71
Merged-chr7-48881128-3	chr7	48880624	48881624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013368)	promoter-TSS (NM_001013368)	-83.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.72	2.76	5.55	12.14	5.13	4.82	6.34	4.42	5.0
Merged-chr11-20107877-3	chr11	20107380	20108380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	intron (NM_146243, intron 1 of 8)	5071.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	52.06	61.75	70.3	41.83	44.32	52.25	72.88	93.74	93.05
Merged-chr4-115847597-3	chr4	115847100	115848100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	8402.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	215.66	237.3	132.27	221.98	214.59	170.4	166.88	212.24	141.77
Merged-chr3-152912402-3	chr3	152911928	152912928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69779.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	32.04	15.67	16.65	35.09	43.85	27.33	48.58	45.99	11.87
Merged-chr18-35662177-3	chr18	35661650	35662650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027733)	promoter-TSS (NM_027733)	36.0	NM_027733	71242.0	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	32.61	27.19	11.1	40.48	16.33	10.45	32.74	23.88	6.25
Merged-chr5-114813943-3	chr5	114813418	114814418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027817)	promoter-TSS (NR_027817)	58.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	125.85	96.3	67.52	124.15	97.03	89.22	100.34	96.39	33.72
Merged-chr8-33646967-3	chr8	33646456	33647456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4980.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	14.3	10.6	6.47	16.19	12.13	20.09	23.24	11.94	14.36
Merged-chr14-55585285-3	chr14	55584752	55585752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033146)	promoter-TSS (NM_033146)	2.0	NM_033146	85308.0	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	44.05	35.94	48.1	31.04	30.32	43.4	45.42	33.6	36.85
Merged-chr9-104814906-3	chr9	104814385	104815385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	-238383.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	54.92	61.75	27.75	36.43	43.85	64.3	31.69	18.57	14.99
Merged-chr1-131019579-3	chr1	131019073	131020073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010548)	promoter-TSS (NM_010548)	-272.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	92.1	82.02	74.92	76.92	59.25	61.89	134.14	127.79	53.08
Merged-chr12-106030623-3	chr12	106030127	106031127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	20364.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	66.36	70.5	24.97	40.48	35.92	32.15	38.02	59.25	17.49
Merged-chr7-15945990-3	chr7	15945503	15946503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133831, exon 1 of 13)	exon (NM_133831, exon 1 of 13)	105.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	160.18	227.63	233.09	180.15	199.67	239.53	212.29	216.66	164.88
Merged-chr13-62964843-3	chr13	62964333	62965333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289924)	promoter-TSS (NM_001289924)	-60.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	86.38	73.73	47.17	66.8	63.45	38.58	52.81	73.84	37.47
Merged-chr6-145303801-3	chr6	145303307	145304307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53255.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	338.66	362.64	223.84	331.29	352.21	356.88	406.63	493.9	256.06
Merged-chr11-69795492-3	chr11	69795053	69796053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291104)	TTS (NM_001291104)	384.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	26.31	20.74	11.1	29.01	16.33	17.68	26.4	20.34	13.74
Merged-chr9-44379379-3	chr9	44378869	44379869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021395)	promoter-TSS (NM_021395)	-121.0	NM_021395	12282.0	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	256.85	240.53	139.67	303.62	243.52	183.26	231.3	261.76	93.05
Merged-chr17-84126332-3	chr17	84125838	84126838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47678.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	112.12	108.75	76.77	111.33	93.3	110.12	87.66	95.07	99.3
Merged-chr7-16842846-3	chr7	16842354	16843354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252458)	promoter-TSS (NM_001252458)	-48.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	70.93	54.83	65.67	56.68	28.92	57.87	74.99	54.39	74.94
Merged-chr11-58307090-3	chr11	58306589	58307589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182996)	promoter-TSS (NM_182996)	20.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	19.45	18.43	9.25	15.52	19.13	22.51	23.24	13.27	17.49
Merged-chr6-72380490-3	chr6	72379944	72380944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080742)	promoter-TSS (NM_001080742)	24.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	131.57	137.31	116.54	122.12	112.9	169.6	146.81	151.22	88.68
Merged-chr2-93462521-3	chr2	93462011	93463011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-9.0	NM_007656	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	239.12	191.23	100.82	205.11	139.49	104.49	139.42	118.06	54.96
Merged-chr9-21235537-3	chr9	21235084	21236084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110307, intron 2 of 5)	intron (NM_001110307, intron 2 of 5)	3748.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	104.69	75.57	78.62	90.41	61.11	116.55	126.74	109.66	80.56
Merged-chr7-55969649-3	chr7	55969172	55970172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	B1_Mus2|SINE|Alu	7141.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	147.02	193.07	135.04	137.64	99.37	142.27	158.43	180.4	99.92
Merged-chr6-87809339-3	chr6	87808827	87809827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	430.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	239.12	282.46	146.14	180.82	134.35	116.55	147.87	176.87	106.17
Merged-chr5-110879812-3	chr5	110879291	110880291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267622)	promoter-TSS (NM_001267622)	-12.0	NM_001267622	209683.0	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	32.04	17.05	29.6	32.39	18.66	22.51	19.01	8.84	14.99
Merged-chr8-105700677-3	chr8	105700190	105701190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286345)	promoter-TSS (NM_001286345)	-458.0	NM_001047436	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	128.71	105.98	79.55	109.3	92.84	87.61	102.45	114.96	39.35
Merged-chr15-82338030-3	chr15	82337514	82338514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355546, intron 2 of 8)	intron (NM_001355546, intron 2 of 8)	812.0	NM_001355546	17939.0	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	94.39	78.33	67.52	62.07	63.91	75.56	52.81	66.33	39.35
Merged-chr15-59721188-3	chr15	59720691	59721691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72537.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	76.08	66.35	65.67	92.44	79.31	108.51	79.21	67.65	65.58
Merged-chr14-63132495-3	chr14	63131993	63132993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	10031.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	237.4	191.69	127.64	230.08	198.27	119.76	222.86	194.11	103.05
Merged-chr7-102018286-3	chr7	102017797	102018797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010531)	promoter-TSS (NM_010531)	-142.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	313.49	312.87	218.29	336.01	286.44	329.55	385.51	477.98	207.34
Merged-chr3-136426769-3	chr3	136426250	136427250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22599.0	NR_040592	70055.0	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	62.93	71.42	54.57	58.7	47.12	76.36	70.76	84.9	34.35
Merged-chrX-8090537-3	chrX	8090028	8091028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009515)	promoter-TSS (NM_009515)	-37.0	NM_009515	22376.0	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	81.8	115.2	92.5	65.45	79.77	109.32	101.39	126.46	75.57
Merged-chr8-43443075-2	chr8	43442576	43443576	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85061.0	NM_001009547	382007.0	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	5.15	6.91	3.7	7.42	14.0	12.86	24.29	22.11	18.11
Merged-chr1-80452215-3	chr1	80451709	80452709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	L2|LINE|L2	6277.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	40.62	45.16	34.22	40.48	25.19	37.78	52.81	42.89	43.09
Merged-chr6-40471415-3	chr6	40470906	40471906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286664)	promoter-TSS (NM_001286664)	-9.0	NM_212468	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	84.09	123.95	82.32	94.46	138.55	113.33	129.91	124.25	71.82
Merged-chr6-85380682-3	chr6	85380198	85381198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6064.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	10.3	9.22	8.32	16.19	11.2	15.27	6.34	5.75	10.62
Merged-chr15-38650977-3	chr15	38650471	38651471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10933.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	58.35	44.24	21.27	58.7	42.92	53.05	47.53	31.84	20.61
Merged-chr9-32118076-1	chr9	32117576	32118576	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 1 of 21)	intron (NM_001195632, intron 1 of 21)	1940.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	5.72	8.29	11.1	5.4	5.6	8.84	5.28	5.31	3.75
Merged-chr19-23141636-2	chr19	23141146	23142146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010638, exon 1 of 2)	5' UTR (NM_010638, exon 1 of 2)	420.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	177.34	197.68	88.8	321.17	278.04	259.62	299.96	294.93	156.13
Merged-chr5-136170712-3	chr5	136170211	136171211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178751)	promoter-TSS (NM_178751)	-55.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	324.35	287.07	214.59	363.67	258.45	250.78	271.44	267.07	159.88
Merged-chr18-77944877-3	chr18	77944388	77945388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 1 of 43)	L1MC4a|LINE|L1	6421.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	74.94	77.87	30.52	66.8	53.18	24.11	119.35	103.02	56.21
Merged-chr4-32588430-3	chr4	32587939	32588939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13943.0	NM_010289	14610.0	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	11.44	5.07	14.8	13.49	13.53	15.27	15.84	9.29	14.36
Merged-chr12-59219916-3	chr12	59219423	59220423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-440.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	323.21	305.5	294.14	281.36	275.24	258.02	273.55	257.34	189.23
Merged-chr2-18975469-1	chr2	18974969	18975969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	22652.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	27.46	33.64	26.82	29.69	18.66	20.9	11.62	17.24	16.86
Merged-chr11-51921930-3	chr11	51921433	51922433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-45698.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	259.71	216.57	183.14	290.13	247.72	225.86	222.86	302.0	174.24
Merged-chr19-7056739-3	chr19	7056217	7057217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134147)	promoter-TSS (NM_134147)	-51.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	15.45	16.59	24.05	24.96	14.93	25.72	21.12	18.57	21.86
Merged-chr7-118712512-3	chr7	118712016	118713016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360794)	promoter-TSS (NM_001360794)	-27.0	NM_001360794	101565.0	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110|cep110	centriolar coiled coil protein 110	protein-coding	20.59	11.06	11.1	13.49	12.13	9.65	16.9	20.78	8.12
Merged-chr15-95828207-3	chr15	95827716	95828716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1856.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	240.26	129.94	110.07	151.14	77.44	64.3	147.87	115.41	60.58
Merged-chr13-110798408-3	chr13	110797879	110798879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105120.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	5.72	6.45	9.25	12.14	5.6	8.84	6.34	13.71	5.0
Merged-chr8-120686260-3	chr8	120685762	120686762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17942.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	96.11	69.12	84.17	144.39	89.1	124.59	128.85	98.6	67.45
Merged-chr4-34687328-3	chr4	34686833	34687833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011895, exon 1 of 8)	5' UTR (NM_011895, exon 1 of 8)	105.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	48.05	29.03	23.12	44.53	48.52	49.83	35.91	30.95	28.73
Merged-chr5-44052724-2	chr5	44052224	44053224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	42044.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	46.91	34.1	16.65	6.75	1.4	4.02	59.15	51.29	15.61
Merged-chr9-65575994-3	chr9	65575492	65576492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	4095.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	147.02	107.36	74.0	138.99	77.91	116.55	107.73	91.09	78.07
Merged-chr9-96716021-1	chr9	96715521	96716521	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	3424.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	9.72	16.13	25.9	11.47	9.8	24.92	9.51	9.73	9.99
Merged-chr8-4779616-3	chr8	4779126	4780126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-59.0	NM_011369	20419.0	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	16.02	23.04	11.1	15.52	20.53	16.08	31.69	28.3	9.99
Merged-chr6-92199625-2	chr6	92199121	92200121	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030081, intron 7 of 11)	intron (NM_030081, intron 7 of 11)	15190.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	2.86	4.15	1.85	9.45	4.2	8.84	7.39	8.4	6.87
Merged-chr2-180710115-3	chr2	180709621	180710621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177852)	promoter-TSS (NM_177852)	-105.0	NM_001289652	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	216.24	210.12	188.69	169.35	169.34	192.91	179.55	156.97	153.01
Merged-chr11-113752489-3	chr11	113751982	113752982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163346)	promoter-TSS (NM_001163346)	-667.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	200.79	225.78	153.54	198.37	239.79	196.12	236.59	308.19	196.1
Merged-chr17-56183935-3	chr17	56183418	56184418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080837)	promoter-TSS (NM_080837)	2.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	219.67	238.69	119.32	247.62	277.11	166.38	229.19	218.43	98.68
Merged-chr6-42929209-3	chr6	42928712	42929712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	1979.0	NM_146295	258292.0	Mm.222992	NM_146295	ENSMUSG00000073111	Olfr446	MOR261-12	olfactory receptor 446	protein-coding	10.3	11.98	0.0	11.47	4.2	6.43	13.73	6.63	5.0
Merged-chr18-65495979-3	chr18	65495497	65496497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	65000.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	72.08	91.24	74.92	80.29	62.51	90.02	24.29	15.03	13.74
Merged-chr1-169969321-3	chr1	169968814	169969814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040438)	promoter-TSS (NR_040438)	-95.0	NR_040438	67303.0	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	21.74	16.59	10.17	28.34	18.66	15.27	12.67	19.01	9.37
Merged-chr8-78626830-3	chr8	78626345	78627345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	117517.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	21.74	25.8	22.2	24.29	20.53	21.7	20.07	7.52	17.49
Merged-chr14-54254000-3	chr14	54253511	54254511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113358)	promoter-TSS (NM_001113358)	-82.0	NM_010015	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	192.78	196.75	107.29	175.43	143.22	135.04	215.46	188.36	103.05
Merged-chr17-59021056-3	chr17	59020545	59021545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_145521, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-7723.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	5.72	7.83	5.55	13.49	6.53	8.84	10.56	10.17	16.86
Merged-chr7-142403829-3	chr7	142403338	142404338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15968.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	175.62	146.07	78.62	145.74	78.37	77.16	122.52	141.94	83.69
Merged-chr14-102903049-3	chr14	102902561	102903561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79571.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	46.91	45.62	42.55	45.88	29.39	39.39	45.42	54.39	46.84
Merged-chr15-66577533-3	chr15	66577034	66578034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081409)	promoter-TSS (NM_001081409)	-38.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	276.3	212.88	179.44	218.61	193.13	166.38	236.59	171.12	115.54
Merged-chr8-57511739-3	chr8	57511215	57512215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008252)	promoter-TSS (NM_008252)	-128.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	224.82	175.1	129.49	207.14	258.45	140.66	175.33	233.46	96.8
Merged-chr7-118533207-6	chr7	118532701	118533701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001304758, exon 1 of 7)	exon (NM_001304758, exon 1 of 7)	155.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	456.5	524.83	260.84	483.77	473.51	312.67	449.93	582.33	221.71
Merged-chr16-73875166-3	chr16	73874650	73875650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	466917.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	33.75	20.74	18.5	39.81	26.59	32.96	44.36	34.93	26.85
Merged-chr4-148444721-3	chr4	148444208	148445208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027873)	promoter-TSS (NM_027873)	43.0	NM_027873	71707.0	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	50.91	46.08	44.4	53.98	41.05	73.95	89.78	48.2	42.47
Merged-chr8-85083244-3	chr8	85082744	85083744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010764)	promoter-TSS (NM_010764)	-25.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	279.16	318.4	182.22	244.92	200.6	159.95	207.01	317.48	114.91
Merged-chr2-11598473-3	chr2	11597970	11598970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 2 of 11)	ID_B1|SINE|B4	4729.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	73.22	81.1	58.27	74.89	85.37	75.56	115.12	129.11	63.7
Merged-chr19-6858237-3	chr19	6857747	6858747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081291)	promoter-TSS (NM_001081291)	-36.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	241.41	180.63	147.99	207.81	140.89	158.35	286.23	246.73	153.01
Merged-chr5-111330665-3	chr5	111330193	111331193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301666)	promoter-TSS (NM_001301666)	-4.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	102.4	101.83	97.12	99.18	88.64	114.14	95.06	60.58	53.71
Merged-chr2-166493110-3	chr2	166492629	166493629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45678.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	70.36	23.96	16.65	95.14	37.79	32.15	71.82	41.12	23.11
Merged-chr15-67176965-3	chr15	67176521	67177521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009177)	promoter-TSS (NM_009177)	-139.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	115.55	133.17	96.2	110.65	105.9	145.49	117.24	98.6	91.81
Merged-chr18-56709015-3	chr18	56708514	56709514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	CpG	1201.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	96.11	94.46	92.5	72.87	85.37	82.79	129.91	138.84	74.32
Merged-chr19-3389330-3	chr19	3388838	3389838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286557)	promoter-TSS (NM_001286557)	-40.0	NM_001286557	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	310.05	243.75	181.29	276.63	246.78	241.14	259.82	205.61	186.11
Merged-chr10-29361357-3	chr10	29360857	29361857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110198, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	1085.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	268.87	301.81	184.99	296.2	283.17	249.98	273.55	202.95	160.5
Merged-chr2-28641121-5	chr2	28640645	28641645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-88.0	NM_001289575	64930.0	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	187.63	153.9	108.22	205.79	155.81	155.13	197.51	152.99	69.95
Merged-chr11-32563809-3	chr11	32563301	32564301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	30535.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	123.56	69.12	38.85	120.77	88.64	69.93	94.0	105.68	40.59
Merged-chr6-38710620-3	chr6	38710109	38711109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	47540.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	37.76	32.25	16.65	44.53	43.39	20.09	28.52	35.82	23.73
Merged-chr7-140956002-3	chr7	140955498	140956498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-37.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	79.52	81.1	107.29	128.2	76.51	145.49	118.29	97.72	138.65
Merged-chr2-91485046-4	chr2	91484560	91485560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 16 of 37)	L1_Rod|LINE|L1	27529.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	294.04	281.08	154.47	290.8	270.57	182.46	282.0	356.83	126.78
Merged-chr7-71832347-2	chr7	71831847	71832847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77348.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	8.58	4.61	5.55	4.72	12.6	16.08	1.06	2.21	1.25
Merged-chrX-157492137-3	chrX	157491629	157492629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359185)	promoter-TSS (NM_001359185)	158.0	NM_009214	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	57.21	48.38	48.1	67.47	37.32	62.7	89.78	51.73	35.6
Merged-chr8-72272910-1	chr8	72272410	72273410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32892.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	27.46	18.89	17.57	68.82	20.99	32.15	20.07	7.07	11.87
Merged-chr1-121431077-3	chr1	121430545	121431545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-22.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	267.72	288.91	243.26	172.05	210.86	176.03	267.21	223.74	135.52
Merged-chr10-40348737-3	chr10	40348239	40349239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168304)	promoter-TSS (NM_001168304)	-569.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	139.58	190.76	129.49	118.08	153.95	157.54	143.64	207.82	106.79
Merged-chr5-120526434-3	chr5	120525946	120526946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	15254.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	66.93	52.07	40.7	64.77	47.58	39.39	114.07	83.13	28.73
Merged-chr6-34619688-3	chr6	34619203	34620203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	21199.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	20.59	35.94	30.52	62.07	52.25	69.13	72.88	65.44	60.58
Merged-chr10-80569881-3	chr10	80569385	80570385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	7411.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	48.05	35.02	59.2	27.66	27.06	36.17	39.08	41.56	29.35
Merged-chr13-22043129-3	chr13	22042692	22043692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	-38.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	97.82	115.66	53.65	84.34	80.24	102.88	85.55	122.04	89.93
Merged-chr13-110563057-2	chr13	110562555	110563555	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168011.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	8.58	2.3	10.17	8.77	4.67	6.43	8.45	3.1	6.25
Merged-chr19-21272177-3	chr19	21271668	21272668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-110.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	372.98	316.56	302.46	324.54	232.79	213.81	278.83	214.01	174.24
Merged-chr2-147013423-2	chr2	147012885	147013885	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	CpG	386.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	327.21	395.81	310.78	300.92	332.62	293.38	309.46	323.22	201.1
Merged-chr8-14873956-3	chr8	14873457	14874457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14579.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	10.87	14.28	11.1	29.69	18.19	13.66	12.67	19.46	12.49
Merged-chr9-121330247-3	chr9	121329752	121330752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	B4|SINE|B4	32750.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	69.79	60.36	47.17	78.94	46.18	44.21	57.03	73.4	50.59
Merged-chr16-33591888-3	chr16	33591409	33592409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	73314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	36.61	24.42	33.3	30.36	21.46	21.7	38.02	21.22	10.62
Merged-chr6-120039827-3	chr6	120039318	120040318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	59.49	74.65	37.0	97.83	94.7	77.16	99.28	96.39	43.72
Merged-chr11-115692174-3	chr11	115691661	115692661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	7373.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	424.46	385.22	179.44	425.75	394.2	233.9	392.9	517.34	168.0
Merged-chr2-20894369-3	chr2	20893867	20894867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	MTD|LTR|ERVL-MaLR	73354.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	8.58	5.99	2.77	5.4	4.67	3.22	4.22	4.42	8.74
Merged-chr7-90476087-3	chr7	90475589	90476589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-94.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	85.81	76.49	55.5	96.48	102.63	87.61	81.33	87.99	30.6
Merged-chr1-64118381-3	chr1	64117877	64118877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	3012.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	48.62	52.07	62.9	61.4	48.98	78.77	39.08	41.12	33.1
Merged-chr14-59201126-3	chr14	59200630	59201630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360611)	promoter-TSS (NM_001360611)	-98.0	NM_027764	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	135.0	94.0	94.35	170.7	141.82	117.35	153.15	85.34	59.33
Merged-chr3-89863870-3	chr3	89863386	89864386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32516.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	90.38	75.11	52.72	70.85	66.71	84.4	88.72	76.49	54.33
Merged-chr9-99180508-3	chr9	99180033	99181033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40322.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	155.03	138.24	148.92	175.43	141.35	118.16	199.62	191.9	105.55
Merged-chr7-137411079-3	chr7	137410547	137411547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-291.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	282.02	348.81	246.04	356.93	342.42	299.01	370.72	461.62	223.58
Merged-chr14-76110847-3	chr14	76110364	76111364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013745)	promoter-TSS (NM_013745)	-27.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	417.6	547.87	337.61	369.07	464.18	278.11	359.1	395.74	219.21
Merged-chr5-139294331-3	chr5	139293843	139294843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 3 of 10)	intron (NM_172723, intron 3 of 10)	31121.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	34.9	29.49	34.22	33.74	26.59	34.56	27.46	31.84	32.48
Merged-chr3-90231606-3	chr3	90231104	90232104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206924)	promoter-TSS (NM_206924)	7.0	NM_206924	23922.0	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	184.77	169.11	101.74	190.27	179.61	131.02	145.75	146.36	83.06
Merged-chr7-92832619-3	chr7	92832112	92833112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029494, intron 4 of 4)	Lx6|LINE|L1	41635.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	2.86	4.15	7.4	8.77	4.67	6.43	5.28	4.42	3.12
Merged-chr2-91086516-3	chr2	91086014	91087014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10164.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	311.2	263.57	225.69	253.02	181.94	217.83	245.04	286.52	190.48
Merged-chr8-70865784-3	chr8	70865292	70866292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7698.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	221.96	146.99	87.87	232.78	124.09	110.92	97.17	92.41	54.96
Merged-chr6-116208089-3	chr6	116207596	116208596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026585)	promoter-TSS (NM_026585)	63.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	392.43	302.74	242.34	460.16	401.66	278.91	344.32	455.43	139.89
Merged-chr2-129593971-3	chr2	129593470	129594470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	801.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	434.76	559.85	392.18	412.25	446.92	405.91	449.93	550.06	361.6
Merged-chr8-64947201-3	chr8	64946735	64947735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	50.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	320.92	278.77	313.56	326.56	304.63	271.68	297.84	334.72	168.0
Merged-chr13-118420613-1	chr13	118420113	118421113	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-33361.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	6.29	5.07	14.8	4.05	4.2	4.82	24.29	22.55	19.36
Merged-chr1-155416937-2	chr1	155416443	155417443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	CpG	501.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	124.14	118.42	105.44	139.67	104.03	77.97	149.98	133.09	93.05
Merged-chr2-32138050-3	chr2	32137531	32138531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13117.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	164.75	158.05	128.57	157.21	180.54	123.78	170.05	207.38	113.04
Merged-chr18-77767802-3	chr18	77767292	77768292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146089)	promoter-TSS (NM_146089)	7.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	33.18	25.34	17.57	24.96	29.39	26.53	41.19	32.28	14.99
Merged-chr17-28420538-3	chr17	28420057	28421057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-55341.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	74.37	65.43	74.0	95.81	63.91	57.87	73.93	115.41	73.07
Merged-chr5-77013367-3	chr5	77012879	77013879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077218, intron 2 of 3)	intron (NR_077218, intron 2 of 3)	-2644.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	22.31	34.1	25.9	30.36	20.99	36.17	19.01	13.71	12.49
Merged-chr7-127016813-4	chr7	127016330	127017330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001102563)	TTS (NM_001102563)	522.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	85.24	98.61	88.8	76.92	74.64	113.33	88.72	105.24	86.81
Merged-chr7-99980367-3	chr7	99979776	99980776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175388, exon 1 of 6)	exon (NM_175388, exon 1 of 6)	182.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	196.79	146.07	169.27	182.17	96.1	114.94	154.2	92.86	61.2
Merged-chrX-10717404-3	chrX	10716912	10717912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166635)	promoter-TSS (NM_001166635)	47.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	80.09	119.34	87.87	115.38	75.57	111.73	124.63	187.48	78.69
Merged-chr17-79895444-3	chr17	79894892	79895892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357752, intron 1 of 13)	CpG	731.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	216.24	117.96	113.77	198.37	113.36	96.45	186.94	76.94	86.81
Merged-chr16-57280384-3	chr16	57279890	57280890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027651, intron 3 of 7)	intron (NM_027651, intron 3 of 7)	12461.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	14.3	6.91	5.55	12.14	7.46	6.43	9.51	6.63	4.37
Merged-chr6-91440924-3	chr6	91440396	91441396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045980)	promoter-TSS (NR_045980)	-42.0	NR_045980	75787.0	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	140.73	126.72	119.32	158.56	152.55	140.66	166.88	175.98	58.08
Merged-chr18-38185530-3	chr18	38184981	38185981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24281.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	93.82	88.47	86.02	77.59	57.38	106.1	84.49	81.8	64.33
Merged-chrX-49288311-3	chrX	49287786	49288786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145951)	promoter-TSS (NM_145951)	-44.0	NM_001271450	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	33.18	30.87	29.6	42.51	38.25	43.4	60.2	33.16	41.22
Merged-chr16-70385703-3	chr16	70385211	70386211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	71762.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	18.88	19.35	22.2	16.87	11.2	16.88	41.19	30.95	41.22
Merged-chr9-110525919-3	chr9	110525417	110526417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010628)	TTS (NM_010628)	-6680.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	32.04	23.04	19.42	20.92	20.53	20.09	24.29	27.86	33.72
Merged-chr17-73035405-3	chr17	73034875	73035875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72610.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	261.43	238.23	169.27	277.31	259.38	204.97	282.0	328.09	143.64
Merged-chr4-123026350-3	chr4	123025851	123026851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151450, intron 1 of 9)	intron (NR_151450, intron 1 of 9)	9758.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	28.03	29.03	33.3	29.69	23.79	22.51	24.29	19.46	25.61
Merged-chr16-3909038-3	chr16	3908560	3909560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029738)	promoter-TSS (NM_029738)	51.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	65.21	70.04	44.4	61.4	58.31	38.58	57.03	65.88	41.84
Merged-chr10-75504943-3	chr10	75504439	75505439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HERVL40-int|LTR|ERVL	12442.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	70.93	58.98	58.27	55.33	66.71	53.05	65.48	77.38	35.6
Merged-chr6-13677512-3	chr6	13676994	13677994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	CpG	472.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	213.95	169.11	165.57	196.34	118.96	98.87	180.61	109.22	115.54
Merged-chr4-57954672-3	chr4	57954168	57955168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	1743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	108.12	144.69	73.07	101.88	87.7	92.44	186.94	251.15	95.55
Merged-chr17-48185443-3	chr17	48184935	48185935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-18178.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	18.31	13.36	18.5	35.76	28.92	18.49	29.57	16.8	21.23
Merged-chr15-100674057-3	chr15	100673538	100674538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033612)	TTS (NM_033612)	-4538.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	75.51	48.84	67.52	61.4	44.32	43.4	66.54	73.84	41.22
Merged-chr6-117906787-3	chr6	117906289	117907289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166431)	promoter-TSS (NM_001166431)	7.0	NM_133834	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	384.99	384.75	244.19	328.59	293.43	228.28	259.82	248.94	178.61
Merged-chr7-34193046-3	chr7	34192555	34193555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360710, exon 4 of 6)	exon (NM_001360710, exon 4 of 6)	3615.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	157.89	147.45	120.24	138.99	119.89	100.47	158.43	128.23	101.8
Merged-chr10-77581662-3	chr10	77581163	77582163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145925)	promoter-TSS (NM_145925)	8.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	141.3	137.77	117.47	140.34	108.7	100.47	144.7	106.12	69.32
Merged-chr2-26910711-3	chr2	26910233	26911233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013721)	promoter-TSS (NM_013721)	-74.0	NM_013721	27176.0	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	189.92	139.16	117.47	214.56	163.74	174.42	142.59	137.96	126.78
Merged-chr7-143038299-3	chr7	143037790	143038790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14460.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	172.19	169.11	150.77	182.17	94.23	160.76	163.71	176.42	116.79
Merged-chr19-40679170-3	chr19	40678662	40679662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	HAL1|LINE|L1	19392.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	244.84	203.67	123.94	219.96	175.87	159.15	214.41	231.25	90.56
Merged-chr14-61556898-3	chr14	61556409	61557409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025697)	promoter-TSS (NM_025697)	-23.0	NM_001310603	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	61.21	49.76	61.97	83.66	71.38	80.38	64.43	61.02	23.73
Merged-chr6-108448577-3	chr6	108448081	108449081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41162.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	187.06	182.01	97.12	205.11	174.47	184.87	160.54	181.29	48.09
Merged-chr7-107594050-3	chr7	107593552	107594552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-999.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	97.25	149.75	119.32	117.4	120.36	121.37	116.18	181.73	93.68
Merged-chr17-28523217-3	chr17	28522719	28523719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7642.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	25.17	34.1	29.6	33.74	35.45	40.19	5.28	14.15	28.1
Merged-chr7-120102363-3	chr7	120101869	120102869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145586)	promoter-TSS (NM_145586)	-57.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	13.16	10.14	5.55	12.82	7.46	16.08	10.56	11.5	6.87
Merged-chr3-35693213-3	chr3	35692709	35693709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-27046.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	9.72	5.99	12.95	4.05	2.33	1.61	3.17	1.77	8.74
Merged-chr9-115310577-3	chr9	115310102	115311102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-181.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	295.75	277.39	197.02	268.54	276.64	215.42	285.17	241.42	154.88
Merged-chr17-5195564-3	chr17	5195081	5196081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	200507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	26.31	36.86	17.57	37.78	36.39	25.72	39.08	29.63	24.98
Merged-chr10-94471640-3	chr10	94471107	94472107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-43250.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	269.44	254.81	166.49	243.57	229.99	181.66	227.08	269.72	144.27
Merged-chr5-99252934-3	chr5	99252441	99253441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145839)	promoter-TSS (NM_145839)	-14.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	314.06	205.05	143.37	295.53	199.2	180.85	272.5	265.3	141.14
Merged-chr8-56294576-3	chr8	56294074	56295074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	22.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	110.98	103.22	86.95	117.4	87.24	65.11	127.8	146.8	52.46
Merged-chrX-36598195-3	chrX	36597695	36598695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016783)	promoter-TSS (NM_016783)	2.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	50.91	48.84	40.7	51.28	50.85	37.78	34.85	34.05	13.74
Merged-chr11-3452374-3	chr11	3451866	3452866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028317)	promoter-TSS (NR_028317)	-71.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	173.9	270.48	197.94	161.93	193.6	213.81	207.01	209.59	131.78
Merged-chr13-37356771-3	chr13	37356273	37357273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	11428.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	80.09	94.46	105.44	109.98	68.58	85.2	103.51	100.81	93.68
Merged-chr2-163761591-3	chr2	163761087	163762087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11348.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	113.84	89.85	51.8	85.69	70.91	77.97	31.69	52.18	26.23
Merged-chr5-110770800-3	chr5	110770313	110771313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173066)	promoter-TSS (NM_173066)	-96.0	NM_173066	75560.0	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	168.76	137.31	176.67	140.34	100.77	117.35	138.36	78.26	60.58
Merged-chr12-110602020-3	chr12	110601504	110602504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	CpG	609.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	292.32	397.66	281.19	283.38	356.41	257.21	258.77	321.46	250.44
Merged-chr7-143830162-3	chr7	143829669	143830669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007856, exon 2 of 9)	5' UTR (NM_007856, exon 2 of 9)	7002.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	149.88	143.76	115.62	145.06	174.47	109.32	161.6	214.45	81.19
Merged-chr14-75179457-3	chr14	75178948	75179948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43023.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	283.17	244.68	177.59	242.9	194.07	183.26	287.28	305.98	200.47
Merged-chr3-51408977-3	chr3	51408494	51409494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025523)	promoter-TSS (NM_025523)	-39.0	NM_025523	66377.0	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	61.21	65.43	53.65	80.97	66.24	56.27	104.56	81.8	32.48
Merged-chr17-55945354-3	chr17	55944851	55945851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146249)	promoter-TSS (NM_146249)	-92.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	218.52	196.75	148.92	233.45	178.21	161.56	213.35	206.49	126.15
Merged-chr18-57578533-3	chr18	57578030	57579030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-26133.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	29.75	42.39	8.32	15.52	18.19	29.74	23.24	25.65	11.87
Merged-chr4-129742432-3	chr4	129741925	129742925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-122.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	253.99	183.85	177.59	212.54	145.55	203.36	224.97	239.65	145.51
Merged-chr17-44436749-3	chr17	44436242	44437242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	248170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	37.18	39.17	52.72	23.62	23.79	23.31	25.35	24.32	21.23
Merged-chr15-58933765-3	chr15	58933269	58934269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	-39.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	298.61	308.26	219.21	271.24	277.11	255.6	245.04	282.1	166.75
Merged-chr7-16310206-3	chr7	16309713	16310713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	CpG	630.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	203.08	173.72	152.62	181.5	140.42	112.53	191.17	165.81	128.65
Merged-chr15-76818197-3	chr15	76817707	76818707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-37.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	112.12	80.18	64.75	108.63	87.7	63.5	76.05	74.73	28.1
Merged-chr1-135633663-2	chr1	135633156	135634156	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35880.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	17.16	11.98	10.17	146.41	134.35	118.96	101.39	114.96	77.44
Merged-chr11-82045508-3	chr11	82045007	82046007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013654)	promoter-TSS (NM_013654)	-205.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	37.76	29.95	28.67	29.69	25.19	23.31	31.69	45.99	11.87
Merged-chr8-120436064-3	chr8	120435572	120436572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52794.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	137.86	117.04	55.5	134.94	83.04	78.77	129.91	136.63	44.97
Merged-chr8-107031285-3	chr8	107030794	107031794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_126165)	promoter-TSS (NM_126165)	-32.0	NM_126165	116733.0	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	74.94	57.14	65.67	102.56	53.65	83.59	74.99	49.52	51.84
Merged-chr11-121673278-3	chr11	121672804	121673804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178664)	promoter-TSS (NM_178664)	-153.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	82.95	90.77	78.62	84.34	82.11	98.87	120.41	89.76	65.58
Merged-chr13-91223989-3	chr13	91223477	91224477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	10.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	331.22	344.67	258.06	412.25	426.86	238.73	388.68	477.54	177.99
Merged-chr2-152756705-3	chr2	152756184	152757184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 2 of 4)	intron (NM_053091, intron 2 of 4)	2511.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	36.04	29.95	12.02	58.03	28.92	20.9	41.19	45.99	14.99
Merged-chr16-44130657-3	chr16	44130168	44131168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	8591.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	49.77	33.64	24.05	44.53	36.85	33.76	57.03	53.94	41.84
Merged-chr16-15890137-3	chr16	15889621	15890621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007679)	TTS (NM_007679)	2835.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	59.49	66.35	49.95	46.56	49.92	67.52	58.09	76.05	59.95
Merged-chr4-155761145-3	chr4	155760626	155761626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_179203)	promoter-TSS (NM_179203)	-28.0	NM_179203	108888.0	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	69.22	67.74	58.27	82.32	85.37	57.07	79.21	73.4	23.73
Merged-chrX-168673965-3	chrX	168673457	168674457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010832)	promoter-TSS (NM_010832)	-55.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	130.43	102.75	77.7	129.55	97.97	77.97	82.38	102.58	71.82
Merged-chr13-101659243-3	chr13	101658759	101659759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33371.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	14.87	5.99	0.0	8.77	9.33	1.61	6.34	6.63	5.0
Merged-chr17-46751618-3	chr17	46751119	46752119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	595.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	261.43	232.7	180.37	186.9	148.82	205.77	228.14	202.51	156.76
Merged-chr16-56037788-3	chr16	56037290	56038290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029092)	promoter-TSS (NM_029092)	-16.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	306.62	341.44	212.74	271.91	316.29	221.85	305.24	317.03	169.25
Merged-chr4-126556945-3	chr4	126556448	126557448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175554)	promoter-TSS (NM_175554)	-32.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	4.58	11.06	17.57	6.75	3.27	4.82	9.51	13.27	7.49
Merged-chr13-110569265-3	chr13	110568734	110569734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174190.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	184.2	236.38	135.97	180.15	148.82	141.47	174.27	215.78	111.17
Merged-chr2-167988440-3	chr2	167987923	167988923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 13 of 21)	intron (NM_001080708, intron 13 of 21)	22170.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	16.02	2.76	3.7	14.84	6.53	12.06	12.67	3.54	2.5
Merged-chr5-65765098-3	chr5	65764603	65765603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	intron (NM_001024917, intron 1 of 19)	1582.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	122.42	118.42	99.89	97.16	99.83	81.99	72.88	76.05	54.33
Merged-chr14-74732245-3	chr14	74731741	74732741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285423)	promoter-TSS (NM_001285423)	-56.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	52.63	34.1	54.57	47.9	37.32	45.82	42.25	41.56	25.61
Merged-chr18-57878660-4	chr18	57878182	57879182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	4.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	54.35	41.93	41.62	78.27	49.92	46.62	62.31	33.6	32.48
Merged-chr10-78352459-3	chr10	78351973	78352973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-773.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	88.1	41.93	49.95	68.82	36.39	39.39	69.71	41.12	28.73
Merged-chr18-46458421-3	chr18	46457920	46458920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7396.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	91.53	58.98	47.17	95.81	51.78	88.42	68.65	47.75	56.83
Merged-chr1-106231503-3	chr1	106231014	106232014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	Lx7|LINE|L1	59645.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	115.55	113.35	71.22	127.52	121.76	98.06	115.12	99.93	71.2
Merged-chr14-33213962-3	chr14	33213451	33214451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2872.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.58	4.15	3.7	7.42	4.67	10.45	4.22	3.1	2.5
Merged-chr7-98703572-1	chr7	98703072	98704072	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_144495)	promoter-TSS (NR_144495)	325.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	215.66	121.65	119.32	184.2	133.42	97.26	185.89	111.43	76.82
Merged-chr3-15156903-3	chr3	15156410	15157410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175392.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	33.18	54.37	33.3	51.28	40.59	30.54	14.79	18.57	19.98
Merged-chr5-3501848-3	chr5	3501289	3502289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42044.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	367.83	377.38	156.32	368.4	379.74	228.28	301.01	474.45	202.97
Merged-chr2-174437883-3	chr2	174437381	174438381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1158.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	557.18	608.24	387.56	533.7	508.49	346.43	446.77	645.12	241.69
Merged-chr11-86579078-3	chr11	86578587	86579587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5071.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	228.25	168.65	147.99	238.85	170.28	164.78	166.88	218.43	122.41
Merged-chr19-47447022-3	chr19	47446546	47447546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	17365.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	163.04	111.97	86.02	157.21	100.3	119.76	97.17	77.82	47.46
Merged-chr10-39417805-3	chr10	39417320	39418320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48021.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	92.67	131.32	85.1	175.43	123.16	120.57	170.05	178.19	91.81
Merged-chr1-155028881-3	chr1	155028379	155029379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54385.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	26.89	14.28	5.55	31.04	10.73	20.9	16.9	7.52	18.74
Merged-chr4-150798990-3	chr4	150798491	150799491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54805.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	60.64	57.14	32.37	78.27	85.84	76.36	58.09	44.66	32.48
Merged-chr10-10558232-3	chr10	10557748	10558748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026405)	promoter-TSS (NM_026405)	-41.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	305.48	407.79	216.44	317.12	433.85	222.65	238.7	360.81	132.4
Merged-chr11-60222964-3	chr11	60222482	60223482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358315)	promoter-TSS (NM_001358315)	-401.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	197.36	191.69	118.39	224.68	200.13	152.72	233.42	274.59	96.8
Merged-chrUn_JH584304-19200-1	chrUn_JH584304	18700	19700	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40489.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	38.02	31.84	0.0
Merged-chr7-13024325-3	chr7	13023826	13024826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011588, exon 1 of 17)	5' UTR (NM_011588, exon 1 of 17)	174.0	NM_011588	21849.0	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	133.86	97.23	131.34	133.59	109.16	144.68	128.85	70.75	71.82
Merged-chr2-166662979-3	chr2	166662496	166663496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	50836.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	9.72	17.51	22.2	18.89	12.6	14.47	29.57	24.76	14.99
Merged-chr11-51938899-3	chr11	51938403	51939403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-28728.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	57.78	57.14	61.97	84.34	48.52	68.32	72.88	64.11	68.7
Merged-chr7-110614846-3	chr7	110614326	110615326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	94.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	346.09	193.07	276.56	300.92	117.09	227.47	310.52	141.05	150.51
Merged-chr17-24163779-3	chr17	24163274	24164274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-41.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	152.74	117.04	94.35	150.46	150.68	120.57	120.41	122.48	80.56
Merged-chr7-46999137-3	chr7	46998607	46999607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175318, intron 2 of 5)	intron (NM_175318, intron 2 of 5)	9307.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	28.03	26.73	12.95	30.36	18.66	25.72	16.9	29.63	22.48
Merged-chr4-55805484-3	chr4	55805001	55806001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-273026.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	35.47	30.87	16.65	21.59	10.73	8.04	8.45	14.59	16.86
Merged-chr2-117186297-1	chr2	117185797	117186797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	1170.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	11.44	5.07	7.4	16.19	6.53	5.63	3.17	6.63	1.87
Merged-chr17-57280557-3	chr17	57280018	57281018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	1418.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	117.84	103.68	74.92	126.17	66.24	109.32	164.76	152.11	83.69
Merged-chr1-34005808-3	chr1	34005310	34006310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6015.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	32.04	46.54	33.3	30.36	20.06	31.35	38.02	23.88	11.24
Merged-chr5-72269749-3	chr5	72269264	72270264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66421.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	56.06	50.23	31.45	89.74	46.18	44.21	65.48	46.43	24.36
Merged-chr7-19750319-3	chr7	19749824	19750824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159724)	promoter-TSS (NM_001159724)	-751.0	NM_001159724	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	54.92	44.24	54.57	50.6	27.06	52.25	50.7	59.69	36.85
Merged-chr13-99353321-3	chr13	99352821	99353821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173757, intron 2 of 10)	intron (NM_173757, intron 2 of 10)	8535.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	26.89	30.87	34.22	24.29	28.46	21.7	31.69	32.72	17.49
Merged-chr8-128506101-3	chr8	128505619	128506619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008737)	TTS (NM_008737)	146878.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	15.45	9.22	5.55	20.24	12.13	20.9	12.67	14.15	12.49
Merged-chr1-171849689-3	chr1	171849187	171850187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	9990.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	131.0	135.93	98.05	158.56	125.49	135.04	208.07	258.23	109.29
Merged-chr2-90478780-3	chr2	90478298	90479298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	376.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	110.41	105.98	71.22	159.23	99.37	129.41	83.44	76.05	51.21
Merged-chr1-151997779-3	chr1	151997277	151998277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	92543.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	45.76	28.11	27.75	30.36	22.39	30.54	33.8	21.67	8.74
Merged-chr13-62466805-3	chr13	62466322	62467322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136496)	promoter-TSS (NM_001136496)	-10.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	70.93	111.05	75.85	98.51	67.18	61.89	105.62	95.51	68.07
Merged-chr16-84834937-3	chr16	84834435	84835435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302216)	promoter-TSS (NM_001302216)	41.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	295.75	270.48	172.04	280.68	265.44	206.57	293.62	272.37	133.65
Merged-chr4-53512636-3	chr4	53512130	53513130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 3 of 15)	L2b|LINE|L2	72217.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.43	2.76	1.85	4.05	5.6	3.22	5.28	2.21	1.87
Merged-chr8-108781374-3	chr8	108780878	108781878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66734.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	42.33	42.85	24.05	48.58	30.79	35.37	15.84	7.07	9.37
Merged-chr1-106818587-3	chr1	106818092	106819092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21867.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	44.62	60.36	22.2	18.22	43.39	10.45	31.69	39.35	17.49
Merged-chr8-46163660-3	chr8	46163160	46164160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357215)	promoter-TSS (NM_001357215)	9.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	30.32	46.54	47.17	60.05	63.45	53.85	66.54	52.18	45.59
Merged-chr13-103919402-3	chr13	103918906	103919906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	1180.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	159.03	216.11	117.47	147.76	168.88	162.37	194.34	229.04	136.77
Merged-chr1-127868809-3	chr1	127868310	127869310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178690)	promoter-TSS (NM_178690)	37.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	81.8	86.63	44.4	86.36	92.37	57.07	81.33	70.3	37.47
Merged-chr10-63429583-3	chr10	63429084	63430084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-514.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	70.36	59.44	49.95	50.6	60.18	61.09	51.75	65.44	37.47
Merged-chr3-127790572-3	chr3	127790093	127791093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356430)	promoter-TSS (NM_001356430)	-64.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	413.59	298.13	286.74	367.05	247.72	265.25	308.41	342.24	180.49
Merged-chr2-132224484-3	chr2	132223979	132224979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23309.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	124.71	102.75	124.87	106.61	50.38	77.16	100.34	91.97	77.44
Merged-chr17-35969901-3	chr17	35969405	35970405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	-155.0	NM_013854	224742.0	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	296.32	257.58	172.97	257.74	214.59	173.62	209.12	220.64	119.91
Merged-chr5-92279349-3	chr5	92278857	92279857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1176.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	53.77	62.21	50.87	26.31	14.93	25.72	47.53	62.79	55.58
Merged-chr8-70873610-5	chr8	70873102	70874102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026964)	promoter-TSS (NM_026964)	-112.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	252.85	207.81	128.57	259.09	162.34	171.21	218.63	173.77	101.17
Merged-chr3-67557362-3	chr3	67556854	67557854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25414.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	144.73	99.53	66.6	80.97	46.65	28.13	137.3	144.59	65.58
Merged-chr8-70698900-3	chr8	70698428	70699428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1189.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	330.07	188.92	187.77	287.43	167.94	202.55	239.75	232.14	130.53
Merged-chr8-126846295-3	chr8	126845778	126846778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2742.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	312.34	194.91	162.79	373.79	161.41	201.75	292.56	259.55	103.67
Merged-chr13-94123072-1	chr13	94122572	94123572	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	65276.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	10.87	3.69	0.92	8.1	3.27	3.22	5.28	4.86	2.5
Merged-chr15-97880706-3	chr15	97880189	97881189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	27607.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	18.88	18.89	16.65	24.29	20.53	31.35	13.73	15.92	11.24
Merged-chr17-7868839-3	chr17	7868336	7869336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57164.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	10.3	7.83	10.17	15.52	6.06	12.86	8.45	3.98	22.48
Merged-chr5-146795044-3	chr5	146794521	146795521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011669)	promoter-TSS (NM_011669)	-65.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	64.07	41.93	64.75	52.63	23.79	49.83	71.82	31.84	49.34
Merged-chr11-3290092-3	chr11	3289641	3290641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253691)	promoter-TSS (NM_001253691)	-316.0	NM_001253690	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	58.92	53.91	49.02	65.45	57.85	61.89	74.99	30.51	29.35
Merged-chr8-104111305-2	chr8	104110814	104111814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-5441.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	115.55	126.72	89.72	122.12	111.03	131.02	180.61	164.93	124.28
Merged-chr19-10895175-3	chr19	10894681	10895681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253843)	promoter-TSS (NM_001253843)	-50.0	NM_134129	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	54.35	66.81	87.87	85.01	73.71	54.66	69.71	64.11	54.33
Merged-chr12-110591671-3	chr12	110591066	110592066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033340, exon 1 of 1)	non-coding (NR_033340, exon 1 of 1)	192.0	NR_033340	319786.0	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	502.84	467.7	270.09	464.21	491.7	310.26	430.92	485.94	192.35
Merged-chr19-5088443-3	chr19	5087938	5088938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026553)	promoter-TSS (NM_026553)	-100.0	NM_026553	68090.0	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	38.9	43.77	30.52	48.58	33.59	45.01	52.81	50.41	49.96
Merged-chr4-101650567-3	chr4	101650067	101651067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	2784.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	50.34	59.44	42.55	44.53	39.65	55.46	49.64	36.7	34.35
Merged-chr15-64040950-3	chr15	64040453	64041453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	18811.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	70.93	65.43	40.7	87.71	66.24	86.01	82.38	65.44	54.33
Merged-chr6-135011583-3	chr6	135011090	135012090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026360)	promoter-TSS (NM_026360)	-22.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	66.93	50.69	53.65	70.17	78.84	49.83	79.21	94.18	42.47
Merged-chr11-8760070-3	chr11	8759585	8760585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-95550.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	17.73	13.82	11.1	20.92	23.79	17.68	38.02	32.28	19.98
Merged-chr14-103785324-3	chr14	103784864	103785864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58337.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	23.45	15.67	9.25	26.99	26.12	24.11	19.01	15.48	12.49
Merged-chr3-95674385-3	chr3	95673890	95674890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13527.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	326.07	213.8	176.67	308.35	176.81	229.88	308.41	392.2	188.61
Merged-chr4-155732780-3	chr4	155732257	155733257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-2047.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	117.84	89.39	94.35	104.58	75.11	88.42	108.79	137.51	57.46
Merged-chr10-44268429-3	chr10	44267951	44268951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053069, exon 1 of 8)	5' UTR (NM_053069, exon 1 of 8)	112.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	156.17	151.6	85.1	132.92	148.35	110.12	115.12	140.17	79.32
Merged-chr7-141902501-3	chr7	141902012	141903012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347562)	promoter-TSS (NM_001347562)	-51.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	93.24	119.34	86.95	81.64	118.03	97.26	96.11	68.98	59.33
Merged-chr14-31596665-3	chr14	31596178	31597178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-19295.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	62.35	59.44	41.62	60.05	45.25	57.87	129.91	114.96	58.71
Merged-chr13-89740452-3	chr13	89739964	89740964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	C-rich|Low_complexity|Low_complexity	2048.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	8.58	7.83	12.95	14.17	4.2	4.82	15.84	11.05	14.99
Merged-chr4-88864798-3	chr4	88864314	88865314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14727.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	88.67	72.8	63.82	61.4	42.92	50.64	76.05	44.66	38.1
Merged-chr11-83703884-3	chr11	83703366	83704366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081957)	promoter-TSS (NM_001081957)	-190.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	114.41	139.62	122.09	143.04	124.56	142.27	153.15	169.35	102.42
Merged-chr11-78497829-3	chr11	78497328	78498328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172795)	promoter-TSS (NM_172795)	-74.0	NM_172795	237868.0	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	2.86	5.07	3.7	3.37	3.73	6.43	3.17	5.31	1.25
Merged-chr16-55551215-3	chr16	55550727	55551727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	56496.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	33.18	23.96	11.1	37.78	20.99	9.65	12.67	26.09	16.24
Merged-chr16-4790151-3	chr16	4789628	4790628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358080)	promoter-TSS (NM_001358080)	164.0	NM_001358082	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	448.49	378.3	250.66	447.34	407.26	269.27	437.26	339.58	148.64
Merged-chrX-102119338-3	chrX	102118824	102119824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027181)	promoter-TSS (NM_027181)	-141.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	22.88	22.58	17.57	26.31	10.26	20.09	38.02	22.11	16.86
Merged-chrX-75416555-3	chrX	75416069	75417069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166457)	promoter-TSS (NM_001166457)	15.0	NM_010839	105886298.0	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	77.23	83.86	60.12	80.97	82.57	83.59	111.96	96.39	56.21
Merged-chr5-90700357-3	chr5	90699847	90700847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58951.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	43.48	32.72	16.65	66.8	53.65	39.39	35.91	29.63	21.23
Merged-chr9-50603914-3	chr9	50603420	50604420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025848)	promoter-TSS (NM_025848)	19.0	NM_013897	30057.0	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	243.69	230.85	167.42	263.14	247.25	204.97	229.19	210.03	164.25
Merged-chr12-88360594-3	chr12	88360139	88361139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028105)	promoter-TSS (NM_028105)	125.0	NM_001361599	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	99.54	116.12	88.8	143.71	183.8	110.92	179.55	145.92	76.19
Merged-chr9-90274698-3	chr9	90274183	90275183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3914.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	211.66	205.51	159.09	200.39	147.88	192.91	282.0	221.08	166.75
Merged-chr13-118387262-3	chr13	118386762	118387762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021556)	promoter-TSS (NM_021556)	-10.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	62.35	51.61	38.85	62.07	50.38	81.99	120.41	98.16	58.71
Merged-chr5-112265649-3	chr5	112265130	112266130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312893, intron 4 of 5)	intron (NM_001312893, intron 4 of 5)	9810.0	NM_001312893	12960.0	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	181.34	175.56	185.92	190.27	127.82	178.44	222.86	225.06	139.89
Merged-chr4-43454719-3	chr4	43454242	43455242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007654)	promoter-TSS (NM_007654)	-116.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	97.25	50.69	55.5	76.24	43.85	79.58	55.98	64.11	49.34
Merged-chr3-121548253-3	chr3	121547753	121548753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15909.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	96.11	90.31	49.02	98.51	84.44	48.23	97.17	100.37	66.2
Merged-chr4-55532942-3	chr4	55532432	55533432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-457.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	423.89	261.26	145.22	375.14	254.25	210.59	318.97	245.4	125.53
Merged-chr7-29007421-3	chr7	29006935	29007935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	intron (NM_009109, intron 101 of 105)	24581.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	146.45	201.36	128.57	166.66	171.68	183.26	43.3	55.27	26.85
Merged-chr1-184852464-3	chr1	184851985	184852985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6638.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	70.93	64.05	88.8	68.82	57.38	57.07	71.82	59.25	49.96
Merged-chr15-51920594-3	chr15	51920097	51921097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43156.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	8.58	11.06	11.1	9.45	11.66	13.66	6.34	8.84	9.37
Merged-chr5-32168651-3	chr5	32168176	32169176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32204.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	14.3	15.21	7.4	14.17	14.93	10.45	27.46	12.82	1.25
Merged-chr5-29861669-3	chr5	29861170	29862170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125734.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	13.73	11.98	9.25	16.19	13.06	9.65	19.01	20.78	11.87
Merged-chr10-75591726-3	chr10	75591220	75592220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	2339.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	37.76	51.15	41.62	47.9	33.12	53.85	42.25	34.05	34.35
Merged-chrX-36864248-3	chrX	36863743	36864743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029951)	promoter-TSS (NM_029951)	3.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	104.11	99.07	97.12	105.26	84.44	68.32	124.63	96.39	57.46
Merged-chr10-88683090-3	chr10	88682579	88683579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-56.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	285.45	272.78	130.42	327.91	217.86	167.99	306.29	327.2	139.27
Merged-chr3-84582748-3	chr3	84582238	84583238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-113.0	NM_001081093	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	81.8	95.38	75.85	59.38	53.65	57.87	46.47	56.16	34.97
Merged-chr2-162932235-6	chr2	162931710	162932710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026499, intron 2 of 5)	CpG-8791	702.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	304.33	318.4	243.26	297.55	326.56	195.32	247.15	217.55	155.51
Merged-chr8-106500163-3	chr8	106499662	106500662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10690.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	60.07	67.27	44.4	61.4	41.99	63.5	58.09	50.85	49.96
Merged-chr15-83595162-3	chr15	83594664	83595664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183017)	promoter-TSS (NM_183017)	-7.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	10.3	6.45	12.95	16.19	10.26	14.47	13.73	10.17	18.74
Merged-chrX-7884377-3	chrX	7883884	7884884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138606)	TTS (NM_138606)	140.0	NM_078484	22232.0	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	60.64	53.91	43.47	60.05	41.99	44.21	62.31	35.82	36.85
Merged-chr3-87408365-3	chr3	87407861	87408861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27421.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	13.16	12.44	9.25	12.14	5.13	12.06	33.8	34.05	9.99
Merged-chr18-82822048-3	chr18	82821548	82822548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33849.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	70.93	48.38	59.2	72.19	38.72	59.48	97.17	80.47	39.35
Merged-chr7-49046517-3	chr7	49046031	49047031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87458.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	21.74	25.8	35.15	53.3	62.51	47.42	24.29	31.84	32.48
Merged-chr6-120083162-3	chr6	120082668	120083668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10212.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	32.04	23.04	12.95	66.8	55.51	32.96	40.14	26.53	10.62
Merged-chr17-34761625-3	chr17	34761117	34762117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV2-int|LTR|ERVK	-17720.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	20.02	21.2	22.2	23.62	22.39	18.49	29.57	33.16	17.49
Merged-chr19-24432594-1	chr19	24432094	24433094	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	44880.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	1.72	5.07	5.55	4.72	1.87	7.23	26.4	16.8	6.25
Merged-chr8-104250890-3	chr8	104250381	104251381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286383)	promoter-TSS (NM_001286383)	20.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	70.36	63.59	88.8	104.58	65.31	77.97	95.06	85.34	58.71
Merged-chr16-27399615-3	chr16	27399100	27400100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	10644.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	45.76	56.22	46.25	40.48	35.45	52.25	49.64	48.64	40.59
Merged-chr7-35065096-3	chr7	35064582	35065582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8516.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	184.77	164.96	117.47	158.56	136.22	142.27	164.76	154.76	86.81
Merged-chr10-121596729-3	chr10	121596180	121597180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-9886.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	104.69	83.4	82.32	127.52	78.37	101.28	132.02	121.15	74.94
Merged-chr11-43353187-3	chr11	43352703	43353703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21258.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	330.07	493.5	169.27	331.29	432.92	291.78	285.17	463.39	184.24
Merged-chr6-29827411-3	chr6	29826924	29827924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-26317.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	24.03	23.5	13.87	18.22	17.73	24.11	42.25	27.41	29.35
Merged-chr2-125123627-3	chr2	125123134	125124134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162417)	promoter-TSS (NM_001162417)	26.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	49.77	27.19	9.25	51.28	20.06	24.11	45.42	18.57	21.86
Merged-chr17-34296163-3	chr17	34295667	34296667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8396.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	422.75	337.29	173.89	218.61	167.48	135.84	204.9	244.96	91.18
Merged-chr7-107595071-3	chr7	107594570	107595570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	19.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	161.89	147.45	160.02	163.28	93.3	154.33	162.65	184.83	106.79
Merged-chr10-95685359-3	chr10	95684856	95685856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121210.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	54.35	59.9	51.8	88.39	55.98	43.4	54.92	68.09	24.98
Merged-chr8-70700025-3	chr8	70699532	70700532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	2293.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	401.01	328.08	317.26	402.81	293.43	277.31	315.8	296.25	217.96
Merged-chr1-160195145-3	chr1	160194629	160195629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025474)	promoter-TSS (NM_025474)	-86.0	NM_025474	64659.0	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	60.07	59.9	74.0	77.59	79.77	72.34	90.83	55.27	38.1
Merged-chr3-83859259-3	chr3	83858770	83859770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17662.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	23.45	17.97	15.72	19.57	15.39	20.9	26.4	11.5	9.99
Merged-chr5-25243308-1	chr5	25242808	25243808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	-3065.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	36.04	20.27	16.65	4.05	2.33	1.61	4.22	0.88	3.75
Merged-chr1-128016330-3	chr1	128015825	128016825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 7 of 20)	intron (NM_001285945, intron 7 of 20)	86146.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	66.93	61.75	33.3	70.85	54.58	53.05	65.48	54.39	23.73
Merged-chr19-47730785-3	chr19	47730286	47731286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026377)	promoter-TSS (NM_026377)	-970.0	NM_026377	67788.0	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	165.32	191.69	110.99	144.39	155.81	134.23	103.51	108.33	103.67
Merged-chr17-46711422-3	chr17	46710933	46711933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145488)	promoter-TSS (NM_145488)	-30.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	66.93	59.44	81.4	55.33	28.46	80.38	44.36	25.65	38.1
Merged-chr18-80692033-3	chr18	80691533	80692533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16140.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	214.52	142.38	128.57	199.72	128.29	125.39	117.24	121.6	79.94
Merged-chr4-135856048-3	chr4	135855573	135856573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	2.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	152.17	125.79	114.69	138.99	87.24	88.42	104.56	100.37	76.82
Merged-chr6-13607888-3	chr6	13607357	13608357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_155435, exon 1 of 4)	non-coding (NR_155435, exon 1 of 4)	241.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	434.76	382.45	294.14	397.41	338.69	289.36	266.16	328.97	219.21
Merged-chr8-84978632-4	chr8	84978079	84979079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008416, exon 1 of 1)	5' UTR (NM_008416, exon 1 of 1)	169.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	259.14	169.11	175.74	291.48	200.6	200.95	232.36	215.78	98.05
Merged-chr7-101348014-3	chr7	101347501	101348501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040111)	promoter-TSS (NM_001040111)	-68.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	40.62	33.18	33.3	45.21	38.25	30.54	59.15	49.52	31.85
Merged-chr11-116087598-3	chr11	116087105	116088105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-610.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	313.49	281.54	159.09	289.45	233.25	130.21	184.83	265.3	118.04
Merged-chr4-86612148-3	chr4	86611645	86612645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173400)	promoter-TSS (NM_173400)	-90.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	102.97	108.28	47.17	93.79	102.17	96.45	85.55	119.39	40.59
Merged-chr1-191072747-1	chr1	191072247	191073247	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	9726.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	346.66	337.29	269.16	358.95	246.78	289.36	368.61	462.51	228.58
Merged-chr11-74724268-5	chr11	74723744	74724744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037610)	promoter-TSS (NR_037610)	140.0	NM_013625	18472.0	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	490.82	393.51	282.11	430.47	393.73	304.64	370.72	292.27	186.11
Merged-chr8-110847117-3	chr8	110846622	110847622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	98.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	150.45	214.73	148.92	168.68	201.53	184.07	240.81	243.19	134.9
Merged-chr11-30163292-2	chr11	30162778	30163778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	34979.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	1.72	4.15	10.17	6.75	4.67	1.61	0.0	2.21	1.25
Merged-chr14-57746709-3	chr14	57746218	57747218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	-595.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	144.73	121.19	90.65	102.56	113.83	94.04	133.08	113.64	58.71
Merged-chr9-101552958-3	chr9	101552453	101553453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	210759.0	NR_110509	102633035.0	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	19.45	14.75	7.4	15.52	11.66	20.9	4.22	9.73	12.49
Merged-chr3-61340314-3	chr3	61339808	61340808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24199.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	9.15	8.29	1.85	9.45	3.27	6.43	5.28	1.77	7.49
Merged-chr13-73328485-3	chr13	73327981	73328981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010888)	promoter-TSS (NM_010888)	1.0	NR_033306	407785.0	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	128.71	160.35	119.32	124.82	122.69	153.52	143.64	189.69	86.18
Merged-chr4-143212654-3	chr4	143212141	143213141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081355)	promoter-TSS (NM_001081355)	68.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	336.37	302.74	278.41	303.62	275.24	271.68	324.25	244.08	207.97
Merged-chr1-87659430-3	chr1	87658913	87659913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	39101.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	119.56	130.4	87.87	111.33	100.3	124.59	123.57	130.44	62.45
Merged-chr4-57930762-3	chr4	57930264	57931264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14500.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	34.32	35.02	19.42	39.81	44.32	33.76	49.64	29.18	18.11
Merged-chr8-111258829-2	chr8	111258318	111259318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009149, exon 1 of 26)	exon (NM_009149, exon 1 of 26)	384.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	301.47	335.45	280.26	322.51	329.35	236.31	289.39	273.26	207.97
Merged-chr2-132689414-3	chr2	132688914	132689914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358261)	promoter-TSS (NM_001358261)	-743.0	NM_001358261	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	25.74	28.57	17.57	33.74	24.72	52.25	30.63	23.43	24.98
Merged-chr2-19371912-3	chr2	19371401	19372401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029619, intron 1 of 4)	CpG	265.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	86.38	94.92	44.4	98.51	120.36	54.66	70.76	67.21	41.84
Merged-chr2-167505446-3	chr2	167504932	167505932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153838, intron 1 of 4)	intron (NR_153838, intron 1 of 4)	1989.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	132.72	134.09	110.99	136.29	93.3	122.98	151.03	190.57	74.32
Merged-chr2-52513870-3	chr2	52513364	52514364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	44747.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	92.67	113.81	56.42	78.27	48.05	81.99	45.42	48.2	53.71
Merged-chr7-29816035-3	chr7	29815532	29816532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145880)	promoter-TSS (NM_001145880)	-40.0	NM_146185	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	62.35	121.19	61.05	81.64	85.37	88.42	91.89	91.97	64.95
Merged-chr14-30672090-3	chr14	30671589	30672589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17714.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	72.65	33.64	52.72	74.89	33.12	48.23	45.42	31.84	36.85
Merged-chr5-76974757-4	chr5	76974320	76975320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025691, exon 1 of 19)	exon (NM_025691, exon 1 of 19)	119.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	160.18	125.79	110.07	153.84	98.9	112.53	142.59	108.77	68.07
Merged-chr4-149137452-3	chr4	149136968	149137968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027263, intron 1 of 4)	CpG	132.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	33.75	30.87	44.4	31.71	23.33	28.13	33.8	26.09	16.86
Merged-chr10-44589490-3	chr10	44589005	44590005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130757.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	51.48	58.52	32.37	64.1	46.18	46.62	47.53	66.33	38.1
Merged-chr6-86665993-3	chr6	86665489	86666489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	3170.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	125.85	144.69	106.37	106.61	95.17	104.49	123.57	168.47	92.43
Merged-chr16-4475253-3	chr16	4474748	4475748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	47827.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	207.66	207.81	205.34	242.22	261.24	250.78	242.92	298.46	137.4
Merged-chr12-102382438-3	chr12	102381973	102382973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	57340.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	75.51	55.29	68.45	97.16	46.18	90.02	95.06	79.15	56.83
Merged-chr17-8283777-3	chr17	8283278	8284278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-35.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	213.95	205.51	170.19	203.09	208.53	200.14	249.26	231.25	97.43
Merged-chrX-98938062-3	chrX	98937536	98938536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207633, exon 1 of 7)	5' UTR (NM_207633, exon 1 of 7)	255.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	159.6	181.09	147.07	155.19	160.95	119.76	166.88	216.66	71.82
Merged-chr19-7341773-3	chr19	7341290	7342290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007928)	promoter-TSS (NM_007928)	70.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	120.7	106.44	136.89	105.26	99.37	134.23	141.53	147.24	89.31
Merged-chr4-45972252-3	chr4	45971754	45972754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146142)	promoter-TSS (NM_146142)	-43.0	NM_146142	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	143.01	94.92	59.2	138.32	58.78	84.4	124.63	56.16	48.09
Merged-chr10-81570970-3	chr10	81570473	81571473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4314.0	NM_019725	21886.0	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	34.32	33.64	30.52	27.66	48.52	59.48	42.25	57.04	28.73
Merged-chr13-113917767-3	chr13	113917256	113918256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123248.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	156.17	157.59	61.05	138.32	149.75	107.71	185.89	205.61	74.94
Merged-chr14-55147009-3	chr14	55146501	55147501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30066.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	129.86	111.97	110.07	123.47	86.3	111.73	132.02	89.76	109.29
Merged-chr17-43326893-3	chr17	43326393	43327393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33538.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	25.17	18.43	7.4	35.76	36.85	38.58	62.31	63.23	18.11
Merged-chr18-46525132-3	chr18	46524620	46525620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173423, intron 1 of 2)	intron (NM_173423, intron 1 of 2)	851.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	375.27	382.91	282.11	361.65	309.3	245.16	313.69	365.23	187.36
Merged-chr18-80408811-3	chr18	80408335	80409335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-44581.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	91.53	67.27	79.55	78.27	72.78	58.68	35.91	35.82	16.86
Merged-chr7-12961922-3	chr7	12961432	12962432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-3906.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	140.15	257.12	125.79	163.96	213.66	150.31	202.79	221.97	123.03
Merged-chr11-95416169-3	chr11	95415674	95416674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	2091.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	395.86	391.21	197.94	162.61	124.09	118.96	209.12	245.4	168.0
Merged-chr16-32079347-3	chr16	32078842	32079842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177326)	promoter-TSS (NM_177326)	0.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	254.56	193.99	202.56	221.98	155.81	128.61	207.01	146.8	129.9
Merged-chr10-68277827-3	chr10	68277318	68278318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	908.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	177.91	173.25	122.09	120.1	96.1	100.47	174.27	190.13	115.54
Merged-chr14-75754132-3	chr14	75753616	75754616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 1 of 22)	CpG	377.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	144.73	101.83	111.92	142.37	102.17	127.0	159.48	116.73	94.3
Merged-chr12-110706986-3	chr12	110706490	110707490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10595.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	82.95	68.66	27.75	123.47	149.75	86.81	133.08	136.19	71.82
Merged-chr18-62088137-3	chr18	62087655	62088655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91826.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	47.48	37.78	40.7	41.16	25.66	38.58	29.57	28.3	27.48
Merged-chr7-19093247-3	chr7	19092750	19093750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126095, exon 15 of 15)	non-coding (NR_126095, exon 15 of 15)	-1294.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	16.59	9.22	18.5	10.12	5.13	24.92	22.18	12.82	25.61
Merged-chr12-79296357-3	chr12	79295873	79296873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-91.0	NM_001008550	211978.0	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	160.75	161.74	109.14	176.78	231.39	175.23	194.34	257.78	96.18
Merged-chr2-151576238-3	chr2	151575691	151576691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145535, intron 1 of 8)	CpG	3568.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	44.05	58.06	39.77	42.51	53.18	81.99	65.48	62.79	31.85
Merged-chr1-63114626-3	chr1	63114080	63115080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081436)	promoter-TSS (NM_001081436)	109.0	NR_045915	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	142.44	112.43	134.12	136.29	106.83	145.49	156.32	118.5	91.18
Merged-chr11-78176520-3	chr11	78176017	78177017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080849, intron 1 of 14)	intron (NM_080849, intron 1 of 14)	149.0	NM_080849	140859.0	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	85.81	72.34	95.27	91.76	71.84	71.54	87.66	121.6	86.18
Merged-chr9-21918234-3	chr9	21917727	21918727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324531)	promoter-TSS (NM_001324531)	-44.0	NM_001324531	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	17.73	17.97	18.5	30.36	19.13	36.17	17.96	22.11	19.36
Merged-chr4-144908986-3	chr4	144908492	144909492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	15855.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	62.93	61.28	69.37	80.97	59.71	76.36	72.88	54.39	39.35
Merged-chr18-67933178-3	chr18	67932663	67933663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172631)	promoter-TSS (NM_172631)	-10.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	45.19	42.85	27.75	76.24	35.45	44.21	22.18	11.05	9.37
Merged-chr7-25238510-3	chr7	25237984	25238984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-633.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	207.66	270.48	166.49	176.1	195.47	180.85	203.84	305.1	142.39
Merged-chr11-106276619-3	chr11	106276109	106277109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029467)	promoter-TSS (NM_029467)	-63.0	NM_029467	75870.0	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	9.72	7.83	9.25	17.54	8.4	11.25	29.57	8.4	8.74
Merged-chr16-56075952-3	chr16	56075416	56076416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 3 of 24)	CpG	436.0	NM_001304503	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	140.73	133.63	102.67	134.94	97.5	101.28	127.8	118.06	78.07
Merged-chr10-127422231-3	chr10	127421722	127422722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	1355.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	51.48	79.25	42.55	62.75	55.98	47.42	59.15	61.9	54.96
Merged-chr1-131110917-3	chr1	131110408	131111408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13065.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	254.56	224.86	135.04	209.84	139.95	98.06	159.48	214.89	90.56
Merged-chr11-3141893-2	chr11	3141391	3142391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 21 of 32)	intron (NM_030207, intron 21 of 32)	17870.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	78.94	90.77	108.22	99.86	143.22	140.66	6.34	6.19	128.03
Merged-chr7-49047359-3	chr7	49046878	49047878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	88305.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	23.45	23.04	24.05	42.51	53.18	67.52	44.36	31.39	31.23
Merged-chr5-25081751-3	chr5	25081252	25082252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	18890.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.58	7.37	1.85	23.62	15.86	20.9	14.79	3.54	9.99
Merged-chr7-129746943-1	chr7	129746443	129747443	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44C|DNA|TcMar-Tigger	155080.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	14.87	13.82	16.65	13.49	15.86	20.9	9.51	5.31	2.5
Merged-chr7-48789017-3	chr7	48788552	48789552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028031)	promoter-TSS (NM_028031)	49.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	103.54	85.71	74.92	94.46	93.77	124.59	113.01	114.52	69.32
Merged-chr17-71135274-3	chr17	71134777	71135777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48255.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	122.99	114.27	104.52	129.55	107.76	96.45	126.74	150.34	64.33
Merged-chr8-53511781-3	chr8	53511296	53512296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205054)	promoter-TSS (NM_001205054)	94.0	NM_001005847	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	74.37	88.93	65.67	93.11	125.49	90.02	118.29	108.77	63.7
Merged-chr2-38479743-3	chr2	38479251	38480251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-31946.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	53.2	39.17	27.75	49.25	28.46	36.97	28.52	24.76	15.61
Merged-chr19-8819434-3	chr19	8818952	8819952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	51.0	NM_001081196	68693.0	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	212.8	167.26	150.77	126.85	120.83	167.19	159.48	187.04	94.3
Merged-chr3-95530008-3	chr3	95529505	95530505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021281, intron 2 of 7)	intron (NM_021281, intron 2 of 7)	3219.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	68.07	51.15	35.15	49.25	36.85	31.35	39.08	63.67	48.09
Merged-chr14-50924859-3	chr14	50924362	50925362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	31.0	NM_133676	66246.0	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	455.35	491.66	266.39	413.6	471.64	328.75	436.2	558.02	210.47
Merged-chr12-119157244-3	chr12	119156751	119157751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81025.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	68.65	76.03	12.95	60.05	56.91	27.33	90.83	94.18	39.35
Merged-chr8-70439700-3	chr8	70439196	70440196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-123.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	24.03	13.36	17.57	22.27	14.93	37.78	24.29	7.52	14.99
Merged-chr4-134923590-3	chr4	134923082	134924082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-43.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	397.01	295.82	217.36	338.71	259.38	234.71	285.17	373.63	204.85
Merged-chr1-85894575-3	chr1	85894057	85895057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022417)	promoter-TSS (NM_022417)	47.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	245.41	263.57	176.67	169.35	182.4	186.48	188.0	218.87	146.76
Merged-chr17-28952440-3	chr17	28951950	28952950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	14.0	NM_001356299	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	320.35	240.99	183.14	319.82	244.92	203.36	328.47	240.98	101.8
Merged-chr4-47261316-3	chr4	47260805	47261805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	53293.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	47.48	41.01	16.65	44.53	31.26	38.58	23.24	21.67	18.74
Merged-chr7-44857244-3	chr7	44856750	44857750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290767)	promoter-TSS (NM_001290767)	104.0	NM_001290766	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	159.03	164.96	141.52	136.29	100.77	131.82	190.11	195.88	133.65
Merged-chr3-139205766-3	chr3	139205293	139206293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198659)	promoter-TSS (NM_198659)	-100.0	NM_198659	381476.0	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	56.63	52.99	57.35	74.89	81.64	68.32	128.85	149.45	69.32
Merged-chr18-65669103-1	chr18	65668603	65669603	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-29165.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	28.6	33.64	42.55	19.57	20.06	21.7	4.22	1.33	3.12
Merged-chr19-40640053-3	chr19	40639558	40640558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-19712.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	61.21	55.75	27.75	103.23	75.57	76.36	59.15	43.77	46.22
Merged-chr5-36554036-3	chr5	36553539	36554539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	B3A|SINE|B2	-23416.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	88.1	97.69	43.47	72.19	58.78	51.44	49.64	40.24	40.59
Merged-chr16-92301221-3	chr16	92300722	92301722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138743)	promoter-TSS (NM_138743)	-81.0	NM_138743	68936.0	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	57.78	49.3	28.67	53.3	41.99	62.7	52.81	45.99	34.35
Merged-chr9-78113270-3	chr9	78112768	78113768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019987)	promoter-TSS (NM_019987)	30.0	NM_019987	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	27.46	29.95	25.9	45.88	27.99	29.74	27.46	13.71	9.99
Merged-chr9-100546126-4	chr9	100545595	100546595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010878)	promoter-TSS (NM_010878)	39.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	303.19	305.5	208.11	243.57	250.05	227.47	241.87	211.8	153.01
Merged-chr17-47010144-3	chr17	47009672	47010672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177374, exon 1 of 47)	exon (NM_001177374, exon 1 of 47)	360.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	276.3	250.21	160.94	230.08	218.79	197.73	180.61	207.82	173.62
Merged-chr11-115142173-3	chr11	115141660	115142660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-8168.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	106.97	66.81	69.37	93.11	47.58	41.8	51.75	53.06	46.22
Merged-chr19-9917971-3	chr19	9917500	9918500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18467.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	85.81	54.37	38.85	95.81	70.44	58.68	94.0	94.18	42.47
Merged-chr6-48700403-3	chr6	48699875	48700875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7869.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	26.89	19.35	3.7	7.42	7.93	0.0	1.06	4.86	5.0
Merged-chr1-87327537-1	chr1	87327037	87328037	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146112, intron 1 of 28)	CpG	539.0	NM_001110212	227331.0	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	230.54	183.85	165.57	174.75	195.0	150.31	175.33	126.02	85.56
Merged-chr10-127311757-3	chr10	127311273	127312273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	13.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	365.54	259.88	140.59	298.9	237.92	189.69	298.9	369.65	138.02
Merged-chr4-41275477-3	chr4	41274957	41275957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	-322.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	142.44	155.75	120.24	130.22	147.88	133.43	176.38	156.09	73.07
Merged-chr15-79075127-3	chr15	79074660	79075660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145139)	promoter-TSS (NM_145139)	-63.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	41.76	34.56	57.35	37.11	37.79	71.54	54.92	38.47	41.22
Merged-chr10-99451392-3	chr10	99450877	99451877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157794.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	16.59	18.89	1.85	13.49	7.93	10.45	6.34	4.86	3.75
Merged-chr2-127070641-3	chr2	127070104	127071104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026678)	promoter-TSS (NM_026678)	-53.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	154.45	130.4	107.29	161.93	141.35	94.85	84.49	89.76	56.21
Merged-chr2-11602654-1	chr2	11602154	11603154	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152824, intron 1 of 11)	intron (NM_152824, intron 1 of 11)	545.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	211.66	204.59	221.06	210.51	248.65	192.91	229.19	238.33	139.89
Merged-chr14-54259199-3	chr14	54258709	54259709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134076)	promoter-TSS (NM_134076)	-23.0	NM_134076	105501.0	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	34.9	41.47	49.02	39.81	41.99	61.89	101.39	77.82	35.6
Merged-chr18-31910706-3	chr18	31910224	31911224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	1179.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	203.08	209.2	240.49	171.38	172.61	204.16	242.92	156.97	172.37
Merged-chr7-128379033-3	chr7	128378541	128379541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	MLT1C|LTR|ERVL-MaLR	39131.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	245.98	212.88	105.44	263.14	252.38	167.99	189.06	262.65	108.67
Merged-chr3-96572128-3	chr3	96571626	96572626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5325.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	121.28	92.62	95.27	113.35	57.85	110.12	91.89	93.74	89.31
Merged-chr3-157576140-1	chr3	157575640	157576640	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359745, intron 1 of 3)	intron (NM_001359745, intron 1 of 3)	9248.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	5.15	5.99	7.4	6.07	2.33	6.43	6.34	5.75	3.12
Merged-chr10-66814609-3	chr10	66814099	66815099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105785.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	21.74	29.49	12.95	33.74	26.59	26.53	27.46	27.41	18.11
Merged-chr10-5805607-3	chr10	5805135	5806135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-170.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	29.75	21.2	23.12	24.96	24.26	44.21	27.46	33.6	26.23
Merged-chr6-91117007-3	chr6	91116518	91117518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018815)	promoter-TSS (NM_018815)	-192.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	9.15	5.99	9.25	4.72	4.67	1.61	4.22	2.21	0.62
Merged-chr16-30922814-3	chr16	30922319	30923319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158613.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	41.76	36.86	27.75	31.04	29.39	33.76	47.53	31.84	28.73
Merged-chr7-19508581-3	chr7	19508049	19509049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177692)	promoter-TSS (NM_177692)	-121.0	NR_138583	67091.0	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	175.05	193.99	158.17	136.97	178.21	152.72	256.65	248.94	126.78
Merged-chr17-24696128-3	chr17	24695631	24696631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357836)	promoter-TSS (NM_001357836)	25.0	NM_023040	11692.0	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, augmenter of liver regeneration	protein-coding	60.64	49.76	29.6	79.62	64.84	89.22	69.71	55.71	47.46
Merged-chr11-51925783-3	chr11	51925275	51926275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41856.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	92.1	98.15	87.87	117.4	109.16	112.53	126.74	137.96	54.96
Merged-chr8-23208890-3	chr8	23208416	23209416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	-463.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	36.04	38.25	44.4	37.11	38.25	60.28	34.85	34.05	26.85
Merged-chr7-80535146-3	chr7	80534646	80535646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007550)	promoter-TSS (NM_007550)	-27.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	81.8	82.02	46.25	114.7	112.9	73.14	162.65	146.8	68.07
Merged-chr7-126770987-3	chr7	126770497	126771497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024228, exon 8 of 10)	exon (NM_024228, exon 8 of 10)	4583.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	20.59	11.06	10.17	73.54	47.12	86.01	6.34	12.82	27.48
Merged-chr18-56933013-3	chr18	56932534	56933534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3226.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	13.73	14.28	5.55	10.8	10.26	8.04	6.34	7.07	7.49
Merged-chr18-53745138-3	chr18	53744648	53745648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178686)	promoter-TSS (NM_178686)	-601.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	184.2	230.39	129.49	179.47	201.53	146.29	188.0	213.57	110.54
Merged-chr2-32535213-3	chr2	32534702	32535702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-157.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	68.07	62.21	51.8	85.01	88.17	95.65	98.23	76.94	43.09
Merged-chr1-97718651-3	chr1	97718158	97719158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	51434.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	60.07	78.33	48.1	93.11	57.85	69.93	64.43	72.52	38.72
Merged-chr11-58323344-3	chr11	58322846	58323846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028331)	promoter-TSS (NR_028331)	19.0	NM_001256517	319475.0	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	183.63	157.59	155.39	142.37	163.74	163.17	195.39	174.21	96.8
Merged-chr8-11555375-3	chr8	11554880	11555880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-382.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	188.21	157.13	118.39	144.39	126.89	126.19	124.63	130.0	123.66
Merged-chr8-27022565-3	chr8	27022055	27023055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1244.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	221.38	262.19	190.54	294.85	270.57	221.04	298.9	338.26	164.25
Merged-chr13-43795707-3	chr13	43795210	43796210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	10598.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	29.75	18.43	18.5	32.39	26.12	18.49	25.35	23.43	24.36
Merged-chr4-45472254-3	chr4	45471759	45472759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58569.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	124.14	124.87	84.17	149.11	131.56	91.63	96.11	99.49	33.72
Merged-chrX-106031304-3	chrX	106030760	106031760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	4036.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	50.34	81.56	38.85	56.68	77.91	45.01	69.71	88.43	39.35
Merged-chr7-45813942-3	chr7	45813440	45814440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011181, intron 1 of 11)	CpG	376.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	170.47	175.1	152.62	135.62	97.97	113.33	135.19	84.01	76.82
Merged-chr13-100409340-2	chr13	100408839	100409839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008670, intron 15 of 15)	intron (NM_008670, intron 15 of 15)	43525.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	29.17	23.04	21.27	24.96	24.26	26.53	15.84	4.86	14.99
Merged-chr14-120262920-3	chr14	120262404	120263404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12765.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	92.1	75.11	56.42	97.16	74.64	65.91	79.21	88.43	86.18
Merged-chr5-100820919-3	chr5	100820434	100821434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	1.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	30.89	25.8	9.25	26.31	32.19	27.33	41.19	22.11	11.24
Merged-chr16-92867879-2	chr16	92867371	92868371	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41797.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	326.64	278.77	147.99	353.55	259.85	205.77	262.99	331.63	139.89
Merged-chr11-93995260-3	chr11	93994775	93995775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-816.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	529.72	541.88	231.24	581.61	541.62	367.33	405.58	652.2	216.09
Merged-chr9-108342548-3	chr9	108342070	108343070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3490.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	219.1	204.59	127.64	193.64	132.95	150.31	207.01	231.25	115.54
Merged-chr11-61469500-3	chr11	61468992	61469992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15500.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	311.2	279.24	173.89	329.26	237.92	234.71	312.63	373.63	136.77
Merged-chr11-88047679-3	chr11	88047187	88048187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173374, exon 1 of 4)	5' UTR (NM_173374, exon 1 of 4)	314.0	NM_173374	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	167.04	257.12	273.79	177.45	188.0	205.77	258.77	292.71	194.23
Merged-chr14-60269366-3	chr14	60268909	60269909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	4204.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	171.04	211.5	98.97	117.4	121.29	112.53	145.75	177.31	112.42
Merged-chr14-120832022-3	chr14	120831522	120832522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79172.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	34.9	34.1	25.9	42.51	35.92	24.92	53.87	34.93	19.98
Merged-chr15-96715239-3	chr15	96714733	96715733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15505.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	29.17	30.87	29.6	35.09	20.06	28.13	34.85	30.51	21.86
Merged-chr19-5837699-3	chr19	5837194	5838194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	7784.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	92.1	57.6	41.62	64.1	59.25	77.16	49.64	50.41	27.48
Merged-chr11-8689089-3	chr11	8688580	8689580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24545.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	198.5	213.34	150.77	186.22	226.72	151.92	203.84	276.8	128.65
Merged-chr1-152582124-3	chr1	152581630	152582630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	43087.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	324.93	279.24	193.32	319.82	184.27	169.6	224.97	278.57	124.28
Merged-chr13-18717315-3	chr13	18716813	18717813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172120)	promoter-TSS (NM_172120)	21.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	90.38	141.0	79.55	95.14	165.14	86.81	102.45	96.83	50.59
Merged-chr9-21161476-3	chr9	21160978	21161978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4236.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	86.95	47.92	24.97	94.46	48.98	34.56	71.82	50.41	33.1
Merged-chr2-145860740-3	chr2	145860233	145861233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028724, exon 9 of 13)	exon (NM_028724, exon 9 of 13)	-42508.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	48.62	39.63	40.7	74.22	58.31	69.13	39.08	26.53	39.97
Merged-chr2-61577825-3	chr2	61577337	61578337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	-749.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	65.79	57.14	26.82	61.4	38.72	22.51	105.62	99.05	29.98
Merged-chr1-162625521-3	chr1	162625032	162626032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13618.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	56.63	65.89	49.02	130.22	125.02	126.19	78.16	76.05	49.34
Merged-chr18-46597661-3	chr18	46597190	46598190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010120)	promoter-TSS (NM_010120)	-14.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	399.29	375.54	284.89	351.53	322.82	210.59	317.91	323.67	163.63
Merged-chr2-68867354-3	chr2	68866842	68867842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	5901.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	24.03	30.41	24.05	16.19	14.46	15.27	25.35	26.09	28.73
Merged-chr4-88390722-5	chr4	88390195	88391195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48231.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	83.52	42.39	28.67	124.15	64.38	60.28	100.34	68.09	43.09
Merged-chr2-163472636-3	chr2	163472124	163473124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028122)	promoter-TSS (NR_028122)	5.0	NM_173397	228859.0	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	16.02	11.06	12.95	19.57	23.79	31.35	33.8	20.78	12.49
Merged-chr3-20035174-3	chr3	20034678	20035678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146324, exon 1 of 9)	exon (NM_001146324, exon 1 of 9)	132.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	62.35	80.18	68.45	97.16	69.04	63.5	101.39	74.28	49.34
Merged-chr11-3932065-3	chr11	3931556	3932556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015749)	promoter-TSS (NM_015749)	-12.0	NM_015749	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	38.33	46.54	58.27	54.65	34.52	75.56	54.92	55.27	52.46
Merged-chr2-155404838-3	chr2	155404327	155405327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242558, intron 9 of 12)	MIRb|SINE|MIR	22971.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	305.48	240.99	109.14	305.65	227.66	158.35	208.07	243.63	84.31
Merged-chr7-16047878-3	chr7	16047392	16048392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23953.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	89.81	61.75	100.82	106.61	57.38	94.85	92.94	60.58	66.2
Merged-chr5-137103128-1	chr5	137102628	137103628	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13079.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	8.01	4.15	2.77	8.1	9.33	4.82	2.11	0.44	5.0
Merged-chr9-41207612-3	chr9	41207107	41208107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1452.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	153.88	213.34	80.47	137.64	183.34	100.47	166.88	238.77	104.3
Merged-chr13-102683951-3	chr13	102683436	102684436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9611.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	77.8	103.22	57.35	74.22	62.51	61.09	80.27	107.0	53.71
Merged-chr12-55483151-4	chr12	55482654	55483654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	9493.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.72	2.76	1.85	4.05	5.13	4.82	2.11	0.44	0.0
Merged-chr5-147072064-2	chr5	147071557	147072557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	4515.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	92.1	63.13	53.65	124.82	47.12	46.62	9.51	4.42	5.62
Merged-chr6-95117782-3	chr6	95117293	95118293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102670)	promoter-TSS (NM_001102670)	-87.0	NM_001008785	243574.0	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	30.89	32.25	16.65	31.04	39.65	35.37	33.8	36.7	23.11
Merged-chr14-103034265-3	chr14	103033787	103034787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045657)	promoter-TSS (NR_045657)	-484.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	52.63	17.05	3.7	37.78	17.73	15.27	63.37	50.85	26.85
Merged-chr7-99183951-3	chr7	99183453	99184453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	80.66	56.22	43.47	76.92	59.71	55.46	51.75	33.6	21.86
Merged-chr12-55398716-3	chr12	55398209	55399209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011968)	promoter-TSS (NM_011968)	-116.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	177.91	273.71	199.79	188.25	248.65	201.75	207.01	298.46	199.85
Merged-chr5-103678325-3	chr5	103677830	103678830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22598.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	22.88	29.49	46.25	16.87	14.46	25.72	41.19	34.05	19.36
Merged-chr10-67702915-3	chr10	67702428	67703428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130969.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	46.34	35.48	22.2	64.77	27.52	26.53	27.46	31.84	13.12
Merged-chr12-80945495-3	chr12	80944985	80945985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347416)	promoter-TSS (NM_001347416)	-14.0	NM_001347416	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	659.58	694.86	462.48	589.7	610.66	385.01	463.67	590.29	334.12
Merged-chr1-40085981-3	chr1	40085491	40086491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037980)	promoter-TSS (NR_037980)	-102.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	58.92	58.98	32.37	29.69	32.66	11.25	28.52	25.65	23.73
Merged-chr8-71289325-3	chr8	71288809	71289809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16595.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	228.82	216.11	135.04	223.33	190.34	123.78	183.78	257.78	141.14
Merged-chr15-80813053-3	chr15	80812555	80813555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	14445.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	22.88	24.42	5.55	16.87	22.86	19.29	21.12	18.57	12.49
Merged-chr14-73168791-3	chr14	73168305	73169305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	26020.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	223.1	161.27	85.1	230.08	168.88	132.63	180.61	175.1	77.44
Merged-chr17-73937217-3	chr17	73936699	73937699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	12997.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	221.96	179.25	129.49	220.63	198.27	140.66	205.96	229.48	69.95
Merged-chr19-9445504-1	chr19	9445004	9446004	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113744.0	NR_073559	619371.0	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	13.73	16.13	14.8	17.54	21.93	24.11	3.17	0.88	1.25
Merged-chr11-119491424-3	chr11	119490943	119491943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153849)	promoter-TSS (NR_153849)	96.0	NM_001164636	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	291.18	262.65	148.92	243.57	221.13	184.07	253.48	218.43	128.03
Merged-chr8-26966663-3	chr8	26966146	26967146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10690.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	104.11	71.88	75.85	110.65	92.37	86.01	67.6	80.03	90.56
Merged-chr1-101902290-3	chr1	101901773	101902773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_I-int|LTR|ERVK	746505.0	NR_037989	100504525.0	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	12.01	18.89	11.1	20.24	19.59	39.39	13.73	18.57	15.61
Merged-chr10-62486933-3	chr10	62486419	62487419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133672)	promoter-TSS (NM_133672)	-114.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	364.97	292.14	269.16	380.54	297.17	293.38	349.6	288.74	195.48
Merged-chr3-95754926-3	chr3	95754409	95755409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163618)	promoter-TSS (NM_001163618)	68.0	NR_151589	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	30.89	23.96	25.9	24.96	26.12	27.33	29.57	21.22	11.24
Merged-chr10-4386973-5	chr10	4386466	4387466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033466, intron 1 of 2)	CpG	509.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	135.58	96.3	114.69	128.2	83.97	102.08	135.19	73.4	104.3
Merged-chr19-10831932-6	chr19	10831427	10832427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1869.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	114.41	70.5	20.35	138.32	77.91	92.44	69.71	71.63	47.46
Merged-chr14-58201472-3	chr14	58200961	58201961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	128775.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	8.58	10.14	20.35	14.84	9.8	8.84	13.73	16.8	9.99
Merged-chr2-167421542-3	chr2	167421041	167422041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-169.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	550.32	437.74	316.33	555.97	425.46	325.53	429.87	472.23	242.32
Merged-chr15-66476095-3	chr15	66475586	66476586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019457, intron 3 of 11)	intron (NM_019457, intron 3 of 11)	24824.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	9.15	5.53	9.25	10.12	11.2	8.04	8.45	5.31	3.75
Merged-chr8-69625419-5	chr8	69624926	69625926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045553)	promoter-TSS (NM_001045553)	122.0	NM_172754	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	315.2	265.41	184.07	291.48	189.87	183.26	312.63	192.78	120.53
Merged-chr1-60960729-3	chr1	60960231	60961231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17183.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	32.04	21.66	31.45	28.34	24.72	45.82	33.8	30.51	34.97
Merged-chr3-40894133-3	chr3	40893617	40894617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026622)	promoter-TSS (NM_026622)	-160.0	NM_026622	269423.0	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	30.89	23.04	14.8	24.96	16.33	19.29	29.57	20.34	21.23
Merged-chr10-88201150-3	chr10	88200663	88201663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	66.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	149.31	138.7	135.97	205.79	204.33	138.25	174.27	161.39	66.82
Merged-chr15-58744650-3	chr15	58744156	58745156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78771.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	211.66	202.75	45.32	207.14	202.0	81.18	184.83	214.89	80.56
Merged-chr10-41490382-3	chr10	41489854	41490854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009213)	promoter-TSS (NM_009213)	-14.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	63.5	46.08	18.5	58.7	42.45	29.74	35.91	33.16	19.98
Merged-chr16-32277542-3	chr16	32277073	32278073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027355, exon 1 of 6)	5' UTR (NM_027355, exon 1 of 6)	112.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	156.74	162.66	197.94	138.32	154.88	149.5	173.21	139.28	123.66
Merged-chr6-47651057-3	chr6	47650547	47651547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	4047.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	155.03	78.79	111.92	131.57	43.85	61.89	49.64	30.95	22.48
Merged-chr11-11690258-3	chr11	11689637	11690637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301866)	promoter-TSS (NM_001301866)	-40.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	104.11	118.42	80.47	98.51	85.84	86.81	94.0	116.73	85.56
Merged-chr16-13754571-3	chr16	13754062	13755062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357954)	promoter-TSS (NM_001357954)	-2.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	27.46	29.49	42.55	22.94	23.33	32.15	20.07	22.11	17.49
Merged-chrX-48513543-3	chrX	48513035	48514035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012019)	promoter-TSS (NM_012019)	28.0	NM_001290364	26926.0	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	48.62	52.07	31.45	56.0	84.9	41.8	69.71	81.8	33.72
Merged-chr1-75219320-3	chr1	75218819	75219819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009447)	promoter-TSS (NM_009447)	-25.0	NM_001313724	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	116.13	104.6	40.7	171.38	187.54	92.44	77.1	64.11	33.72
Merged-chr6-87182926-1	chr6	87182426	87183426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	RSINE1|SINE|B4	78180.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	10.3	5.99	3.7	2.7	1.87	5.63	5.28	7.07	3.75
Merged-chr13-45965253-4	chr13	45964744	45965744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009124)	promoter-TSS (NM_009124)	-253.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	326.64	257.58	201.64	322.51	202.93	193.71	223.91	259.11	143.64
Merged-chr7-12780195-1	chr7	12779695	12780695	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4537.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	45.76	29.03	16.65	35.09	22.39	12.06	10.56	14.15	2.5
Merged-chr15-63595770-3	chr15	63595194	63596194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116086.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	62.35	52.07	61.97	94.46	62.05	32.96	47.53	37.58	30.6
Merged-chr15-75678424-3	chr15	75677921	75678921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028404, intron 1 of 13)	intron (NM_028404, intron 1 of 13)	379.0	NM_001355589	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	168.18	127.64	107.29	190.27	203.86	117.35	154.2	148.57	61.83
Merged-chr11-118234642-3	chr11	118234127	118235127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13965.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	336.37	283.38	180.37	300.92	210.86	240.33	243.98	332.07	135.52
Merged-chr3-130058654-3	chr3	130058169	130059169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207209, intron 1 of 23)	intron (NM_207209, intron 1 of 23)	2238.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	54.92	40.55	33.3	31.71	23.33	22.51	27.46	22.99	29.98
Merged-chr4-107314326-3	chr4	107313825	107314825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-38.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	43.48	41.01	33.3	46.56	45.25	43.4	48.58	58.81	41.22
Merged-chr2-122028491-3	chr2	122028004	122029004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144545)	promoter-TSS (NM_144545)	-76.0	NM_144545	78655.0	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	230.54	190.76	216.44	173.4	186.14	229.08	232.36	195.88	167.37
Merged-chr10-98684336-3	chr10	98683849	98684849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230293.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	72.08	59.9	22.2	80.29	51.32	31.35	29.57	42.45	9.99
Merged-chr4-137994764-3	chr4	137994269	137995269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	1313.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	223.1	205.05	129.49	217.26	163.74	188.89	213.35	248.06	124.28
Merged-chr6-86848951-2	chr6	86848456	86849456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177762)	promoter-TSS (NM_177762)	484.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	197.93	220.72	142.44	210.51	234.19	172.01	228.14	237.89	124.91
Merged-chr1-180302909-3	chr1	180302400	180303400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27576.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	120.13	109.67	124.87	113.35	69.04	122.98	107.73	100.81	114.91
Merged-chr8-94779314-3	chr8	94778809	94779809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	7129.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	49.2	42.39	38.85	44.53	21.93	31.35	28.52	33.6	31.85
Merged-chr15-54929607-3	chr15	54929090	54930090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9444.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	34.32	37.78	13.87	33.06	12.6	32.96	20.07	42.01	39.35
Merged-chr5-34534076-3	chr5	34533580	34534580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	8296.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	84.09	79.25	80.47	70.85	75.11	101.28	71.82	77.82	69.32
Merged-chr13-45371826-3	chr13	45371324	45372324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17918.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	41.19	55.29	25.9	76.92	70.91	39.39	54.92	43.33	14.36
Merged-chr17-5238922-4	chr17	5238378	5239378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179889.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	143.01	159.43	105.44	147.09	167.01	97.26	121.46	128.23	59.95
Merged-chr11-116130626-3	chr11	116130115	116131115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	513.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	514.85	514.7	343.16	475.68	575.67	364.92	378.11	561.99	286.66
Merged-chr11-59202447-3	chr11	59201945	59202945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037964)	promoter-TSS (NR_037964)	-14.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	205.94	189.84	134.12	222.66	205.26	229.08	143.64	141.49	68.7
Merged-chr15-27625516-3	chr15	27625007	27626007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	5186.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	108.12	95.38	83.25	109.98	80.71	61.89	94.0	81.8	49.96
Merged-chr13-49198965-3	chr13	49198479	49199479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11432.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	236.26	227.17	136.89	309.7	242.58	187.28	287.28	301.12	144.27
Merged-chr4-28420863-1	chr4	28420363	28421363	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-392268.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	4.58	3.23	11.1	10.8	11.66	10.45	4.22	1.33	1.25
Merged-chrX-93757702-3	chrX	93757195	93758195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74400.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	147.59	195.37	86.95	188.25	176.34	163.97	115.12	103.02	99.92
Merged-chr14-46994961-3	chr14	46994460	46995460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6380.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	85.24	87.09	46.25	68.15	34.99	43.4	57.03	80.03	33.1
Merged-chr2-22773682-3	chr2	22773165	22774165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	-662.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	204.22	150.68	86.02	159.91	111.96	75.56	123.57	149.45	106.79
Merged-chr2-5771062-3	chr2	5770557	5771557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56295.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	61.78	87.09	52.72	70.85	58.78	40.99	52.81	56.16	41.22
Merged-chr2-75832212-3	chr2	75831709	75832709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172666)	promoter-TSS (NM_172666)	32.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	107.55	57.14	90.65	81.64	57.85	80.38	87.66	70.75	59.33
Merged-chr11-30986408-3	chr11	30985904	30986904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026527)	promoter-TSS (NM_026527)	-39.0	NM_001290667	68044.0	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	53.2	43.77	41.62	49.25	41.99	36.17	63.37	68.54	39.97
Merged-chr17-34291765-3	chr17	34291259	34292259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	70.93	63.13	82.32	33.06	36.85	17.68	95.06	126.02	32.48
Merged-chr18-20697289-3	chr18	20696766	20697766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-32006.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	141.87	195.37	139.67	159.23	153.48	193.71	201.73	232.14	102.42
Merged-chr17-12119230-3	chr17	12118721	12119721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026644)	promoter-TSS (NM_026644)	-63.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	16.02	26.26	5.55	60.05	56.45	34.56	24.29	22.55	29.98
Merged-chr7-47055950-3	chr7	47055459	47056459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5319.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	130.43	141.0	106.37	194.32	182.87	162.37	191.17	189.69	61.2
Merged-chr19-5845488-3	chr19	5844819	5845819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	159.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	376.41	229.47	212.74	379.87	276.64	261.23	377.06	462.51	191.73
Merged-chr17-5574856-3	chr17	5574337	5575337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	MLT1H1|LTR|ERVL-MaLR	82237.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	221.96	197.68	124.87	227.38	148.35	158.35	228.14	252.48	127.4
Merged-chr5-115272905-3	chr5	115272405	115273405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016698)	promoter-TSS (NM_016698)	-10.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	168.18	143.3	155.39	153.84	123.16	114.14	132.02	133.53	113.66
Merged-chr7-99963049-3	chr7	99962550	99963550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	17408.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	125.28	136.39	118.39	120.1	66.24	90.83	68.65	83.57	84.94
Merged-chr2-83724891-1	chr2	83724391	83725391	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008402, exon 1 of 30)	exon (NM_008402, exon 1 of 30)	494.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	112.12	89.39	123.94	123.47	99.83	102.08	132.02	111.87	106.79
Merged-chr11-69921525-3	chr11	69921022	69922022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166596)	promoter-TSS (NM_001166596)	-136.0	NM_181582	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	362.11	246.06	268.24	328.59	204.8	206.57	218.63	254.25	163.0
Merged-chrX-75514248-3	chrX	75513752	75514752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011692)	promoter-TSS (NM_011692)	-45.0	NM_011692	22327.0	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	24.6	31.79	24.05	33.74	29.86	38.58	27.46	29.18	13.74
Merged-chr11-77515071-3	chr11	77514578	77515578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026185)	promoter-TSS (NM_026185)	-39.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	44.62	23.5	20.35	40.48	34.52	43.4	22.18	22.55	40.59
Merged-chr18-36513034-3	chr18	36512557	36513557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	2748.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	202.51	170.95	67.52	172.73	137.62	103.69	172.16	175.1	78.07
Merged-chr19-6236322-3	chr19	6235827	6236827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-487.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	141.3	148.37	123.02	138.99	97.5	99.67	134.14	163.16	88.68
Merged-chr2-127444547-3	chr2	127444022	127445022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029629)	promoter-TSS (NM_029629)	43.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	83.52	85.25	79.55	101.21	97.5	95.65	78.16	105.24	54.33
Merged-chr8-95807590-3	chr8	95807082	95808082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-120.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	358.68	418.39	284.89	293.5	355.48	352.06	317.91	336.49	242.94
Merged-chr7-110844386-3	chr7	110843876	110844876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025999)	promoter-TSS (NM_025999)	5.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	125.85	164.04	161.87	97.16	118.49	108.51	119.35	112.75	85.56
Merged-chr3-96557882-3	chr3	96557399	96558399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023719)	promoter-TSS (NM_023719)	-58.0	NM_023719	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	161.89	136.39	124.87	123.47	84.44	152.72	161.6	257.34	153.01
Merged-chr17-24719994-3	chr17	24719495	24720495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008503)	promoter-TSS (NM_008503)	-30.0	NR_027900	73474.0	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	410.73	383.83	239.56	379.19	382.07	272.48	272.5	355.5	175.49
Merged-chr11-98682401-3	chr11	98681894	98682894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-160.0	NM_009439	22123.0	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	151.02	114.74	140.59	131.57	105.43	146.29	151.03	119.83	124.91
Merged-chr9-37420822-3	chr9	37420332	37421332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164767, intron 17 of 27)	CpG	12343.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	17.16	18.89	15.72	24.29	26.12	24.11	13.73	8.84	13.12
Merged-chr10-99425477-3	chr10	99424976	99425976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162245.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	12.01	5.53	3.7	12.82	10.26	14.47	1.06	7.07	3.75
Merged-chr19-12556488-3	chr19	12555988	12556988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17022.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	8.01	8.29	7.4	7.42	9.33	9.65	9.51	11.94	14.99
Merged-chr17-78417781-3	chr17	78417288	78418288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 1 of 9)	CpG	364.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	167.61	125.79	175.74	161.26	105.9	151.11	172.16	154.32	112.42
Merged-chr5-93032844-1	chr5	93032344	93033344	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	12178.0	NM_175270	78088.0	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	2.29	2.76	2.77	4.72	2.33	4.82	13.73	0.88	5.0
Merged-chr12-55492378-2	chr12	55491866	55492866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010907, exon 1 of 6)	exon (NM_010907, exon 1 of 6)	281.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	252.85	139.16	147.99	265.84	129.69	146.29	210.18	192.78	125.53
Merged-chr3-157534378-5	chr3	157533867	157534867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	202.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	390.14	355.26	211.81	367.72	386.27	238.73	386.56	357.27	174.87
Merged-chr2-132247776-3	chr2	132247267	132248267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141971)	promoter-TSS (NM_001141971)	21.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	283.74	207.35	187.77	257.74	198.27	184.07	209.12	262.21	103.67
Merged-chr18-84682027-3	chr18	84681511	84682511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289531)	promoter-TSS (NM_001289531)	48.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	196.79	208.27	146.14	223.33	215.06	156.74	209.12	269.28	114.29
Merged-chr5-134639432-3	chr5	134638929	134639929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312867)	promoter-TSS (NM_001312867)	-20.0	NM_033561	22384.0	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	225.96	260.8	233.09	245.6	271.51	244.35	227.08	206.49	146.76
Merged-chr15-89355695-3	chr15	89355204	89356204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271601)	promoter-TSS (NM_001271601)	-15.0	NR_073376	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	173.33	190.76	237.71	123.47	117.09	118.16	174.27	185.27	156.13
Merged-chr5-115845146-3	chr5	115844648	115845648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007708)	promoter-TSS (NM_007708)	-508.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	5.15	4.61	3.7	12.14	2.8	4.02	16.9	1.77	3.75
Merged-chr2-11513263-3	chr2	11512772	11513772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-11182.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	98.39	88.47	53.65	116.73	125.96	116.55	104.56	100.81	64.33
Merged-chr19-61244894-3	chr19	61244394	61245394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16476.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	64.07	38.71	40.7	41.83	34.06	64.3	46.47	51.29	34.35
Merged-chr4-106911392-3	chr4	106910843	106911843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023672)	promoter-TSS (NM_023672)	-127.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	48.62	43.77	43.47	54.65	22.39	56.27	60.2	26.53	51.84
Merged-chr9-88709998-3	chr9	88709507	88710507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9580.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	135.0	212.42	66.6	178.13	180.07	102.08	149.98	173.77	89.31
Merged-chr18-39458938-3	chr18	39458451	39459451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	28294.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	51.48	68.2	15.72	40.48	35.45	60.28	83.44	70.75	32.48
Merged-chr15-99723955-3	chr15	99723463	99724463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	511.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	164.18	174.64	123.02	160.58	125.49	123.78	195.39	209.59	102.42
Merged-chr11-21009707-3	chr11	21009253	21010253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81571.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	59.49	59.9	84.17	55.33	63.91	79.58	59.15	91.53	55.58
Merged-chr4-136898893-3	chr4	136898409	136899409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007572)	promoter-TSS (NM_007572)	-65.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	126.42	107.36	120.24	149.79	112.9	141.47	198.56	190.57	106.17
Merged-chr5-65938158-3	chr5	65937658	65938658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28966.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	16.02	26.73	11.1	17.54	26.12	10.45	17.96	26.97	16.24
Merged-chr7-63911458-3	chr7	63910958	63911958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5399.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	267.15	199.98	155.39	275.96	160.48	225.06	217.57	253.8	143.02
Merged-chr5-122707608-3	chr5	122707107	122708107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011026)	promoter-TSS (NM_011026)	63.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	651.57	516.08	307.08	649.08	571.47	344.83	467.89	618.59	240.44
Merged-chr15-67174731-3	chr15	67174250	67175250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2132.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	128.14	164.04	118.39	87.04	102.17	93.24	83.44	101.26	80.56
Merged-chr1-191119504-3	chr1	191118990	191119990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21076.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	243.69	201.82	157.24	243.57	144.15	150.31	109.84	124.25	56.83
Merged-chr14-10209216-3	chr14	10208711	10209711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	MTD|LTR|ERVL-MaLR	244247.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.86	7.37	3.7	14.17	12.6	9.65	11.62	7.07	6.25
Merged-chr10-95322360-3	chr10	95321852	95322852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	1357.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	158.46	158.05	81.4	178.8	129.69	127.8	220.74	204.72	116.16
Merged-chr12-84361918-3	chr12	84361414	84362414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172581)	promoter-TSS (NM_172581)	-54.0	NM_172582	217707.0	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	41.19	61.75	49.95	27.66	36.39	32.15	26.4	28.74	26.85
Merged-chr11-21425922-3	chr11	21425442	21426442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54675.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	54.35	62.67	62.9	87.71	89.57	86.81	82.38	76.05	48.09
Merged-chr5-146819751-1	chr5	146819251	146820251	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13139.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	278.59	220.72	154.47	223.33	161.41	159.95	229.19	278.12	122.41
Merged-chr7-79466267-3	chr7	79465761	79466761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017462)	promoter-TSS (NM_017462)	12.0	NM_001360095	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	108.69	76.49	94.35	112.0	73.71	111.73	91.89	45.1	50.59
Merged-chr13-24802545-3	chr13	24802048	24803048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024473, exon 1 of 5)	5' UTR (NM_024473, exon 1 of 5)	891.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	132.14	187.54	123.94	134.94	160.01	163.17	210.18	205.61	114.29
Merged-chr3-61363327-2	chr3	61362825	61363825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1182.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	89.24	87.55	88.8	94.46	82.57	111.73	109.84	123.81	86.81
Merged-chr16-23988767-3	chr16	23988265	23989265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	87.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	340.94	317.94	256.21	321.84	291.1	273.29	355.93	309.96	164.25
Merged-chr5-88573513-3	chr5	88573019	88574019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	8479.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	171.04	118.88	94.35	149.79	100.77	105.3	95.06	103.91	96.18
Merged-chr8-25201656-3	chr8	25201138	25202138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177089)	promoter-TSS (NM_177089)	-96.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	129.86	93.54	91.57	139.67	86.77	126.19	111.96	61.9	78.69
Merged-chr6-124273403-3	chr6	124272889	124273889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31262.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	60.64	88.47	79.55	62.75	53.18	62.7	48.58	77.82	47.46
Merged-chr1-67477329-1	chr1	67476829	67477829	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	354302.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	1.14	1.84	6.47	3.37	1.87	4.82	6.34	0.44	5.0
Merged-chr3-96262384-3	chr3	96261899	96262899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033596)	TTS (NM_033596)	918.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	208.23	198.14	173.89	218.61	167.01	128.61	193.28	244.08	118.66
Merged-chr10-78465729-3	chr10	78465234	78466234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172134)	promoter-TSS (NM_172134)	-786.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	504.55	437.74	300.61	512.79	471.17	380.19	423.53	526.18	281.04
Merged-chr9-124016803-3	chr9	124016300	124017300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5171.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	141.87	139.62	85.1	149.79	134.82	135.84	92.94	133.98	78.07
Merged-chr6-97866785-3	chr6	97866284	97867284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	59726.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	100.11	108.75	84.17	83.66	53.65	79.58	94.0	100.37	63.7
Merged-chr9-13545907-3	chr9	13545393	13546393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74096.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	42.9	33.18	28.67	39.81	22.86	31.35	32.74	15.48	14.99
Merged-chr4-111720499-3	chr4	111720003	111721003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026470, intron 1 of 12)	intron (NM_026470, intron 1 of 12)	493.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	134.43	186.16	160.02	144.39	103.56	176.83	160.54	196.76	158.01
Merged-chr11-53859305-3	chr11	53858803	53859803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033332)	promoter-TSS (NR_033332)	-47.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	193.35	190.76	101.74	166.66	147.42	103.69	198.56	189.69	84.94
Merged-chr1-23921958-3	chr1	23921420	23922420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	CpG	461.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	121.85	82.02	110.07	130.9	72.78	86.81	192.23	117.62	71.2
Merged-chr2-32452106-3	chr2	32451600	32452600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-630.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	157.31	181.09	169.27	166.66	160.01	168.8	193.28	259.55	116.16
Merged-chr14-32201924-3	chr14	32201433	32202433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016897)	promoter-TSS (NM_016897)	-38.0	NM_001359915	26430.0	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	138.44	146.99	124.87	132.24	159.55	182.46	159.48	127.79	98.05
Merged-chr14-87416532-3	chr14	87416032	87417032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-51.0	NM_172605	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	268.29	266.33	288.59	275.96	309.3	320.71	262.99	242.75	199.22
Merged-chr14-31019110-3	chr14	31018604	31019604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	27.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	297.47	249.28	204.41	301.6	276.17	176.03	311.57	303.77	127.4
Merged-chr6-125219155-3	chr6	125218660	125219660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080557, intron 3 of 3)	intron (NM_001080557, intron 3 of 3)	3579.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	17.73	14.28	5.55	18.22	14.93	17.68	15.84	21.22	16.24
Merged-chr7-101900869-3	chr7	101900350	101901350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081679, intron 3 of 3)	MIRb|SINE|MIR	2935.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	185.35	183.85	123.94	219.96	188.47	131.02	224.97	231.25	126.15
Merged-chr6-113661701-3	chr6	113661223	113662223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23256.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	295.75	216.11	160.02	317.79	168.88	179.24	293.62	270.16	124.28
Merged-chr14-66186755-3	chr14	66186247	66187247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27077.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	108.69	91.24	93.42	79.62	50.38	42.6	94.0	91.09	74.94
Merged-chr11-89092902-3	chr11	89092394	89093394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033266, exon 4 of 4)	3' UTR (NM_001033266, exon 4 of 4)	19053.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	114.41	82.94	71.22	89.06	55.05	79.58	202.79	138.4	84.94
Merged-chrUn_JH584304-51737-1	chrUn_JH584304	51237	52237	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003518)	TTS (NR_003518)	7952.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	35.91	15.48	0.0
Merged-chr6-26206213-3	chr6	26205690	26206690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	274764.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	21.17	27.19	23.12	22.27	23.79	32.15	27.46	32.28	24.36
Merged-chr12-71055693-3	chr12	71055191	71056191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	39724.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	20.02	13.36	7.4	12.14	7.46	16.08	13.73	9.73	11.87
Merged-chr11-60046418-3	chr11	60045919	60046919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290012)	promoter-TSS (NM_001290012)	70.0	NM_001290012	18618.0	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	18.88	21.66	22.2	49.25	44.32	63.5	62.31	49.52	16.86
Merged-chr18-39491572-3	chr18	39491072	39492072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4327.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	179.05	226.71	212.74	204.44	150.68	235.51	249.26	283.43	139.27
Merged-chr19-37561698-3	chr19	37561194	37562194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	11276.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	35.47	57.6	36.07	40.48	34.52	34.56	52.81	49.08	27.48
Merged-chr11-61653198-3	chr11	61652673	61653673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027817)	promoter-TSS (NM_027817)	-148.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	41.76	34.56	11.1	51.95	35.92	12.06	76.05	69.42	27.48
Merged-chr4-135307666-2	chr4	135307159	135308159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34899.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	29.17	29.03	25.9	17.54	9.8	19.29	15.84	20.34	12.49
Merged-chr12-91738586-3	chr12	91738095	91739095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	47841.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	133.86	105.06	98.05	148.44	105.9	93.24	155.26	144.15	74.32
Merged-chr8-71625259-3	chr8	71624762	71625762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146211)	TTS (NM_146211)	5844.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	33.18	36.86	32.37	37.78	32.66	41.8	44.36	49.08	24.36
Merged-chr4-141790823-3	chr4	141790324	141791324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-180.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	194.5	140.54	147.07	151.14	116.16	131.82	143.64	177.31	78.07
Merged-chr10-8848371-3	chr10	8847873	8848873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	37697.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	69.22	41.01	28.67	76.24	40.12	27.33	64.43	49.52	24.36
Merged-chr4-148940822-3	chr4	148940326	148941326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027195, intron 11 of 15)	intron (NM_027195, intron 11 of 15)	11496.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	97.82	83.86	52.72	84.34	74.64	60.28	57.03	52.18	41.22
Merged-chr7-49000982-3	chr7	49000479	49001479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	41906.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	32.04	26.26	30.52	37.11	39.19	34.56	55.98	33.6	27.48
Merged-chr7-16401092-4	chr7	16400483	16401483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-213.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	383.85	446.5	375.53	365.7	360.14	356.88	431.98	359.92	317.88
Merged-chrX-151017276-3	chrX	151016739	151017739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168600)	promoter-TSS (NM_001168600)	54.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	37.76	28.57	17.57	41.16	25.19	24.92	43.3	29.18	19.98
Merged-chr19-40663926-3	chr19	40663410	40664410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	4140.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	91.53	78.79	80.47	172.73	140.42	141.47	117.24	154.76	51.84
Merged-chr1-180403872-3	chr1	180403380	180404380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-73331.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	498.26	432.22	271.94	526.28	425.92	343.22	368.61	530.6	183.61
Merged-chrX-36874307-3	chrX	36873836	36874836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313696)	promoter-TSS (NM_001313696)	41.0	NM_019668	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	96.68	111.51	82.32	96.48	88.17	93.24	116.18	104.35	60.58
Merged-chr4-41377798-3	chr4	41377302	41378302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355509, intron 3 of 5)	intron (NM_001355509, intron 3 of 5)	25839.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	52.63	78.79	70.3	72.19	68.11	95.65	66.54	52.62	40.59
Merged-chr1-51500375-3	chr1	51499888	51500888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21989.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	42.33	58.98	58.27	65.45	52.25	48.23	63.37	57.92	43.72
Merged-chr9-95682844-3	chr9	95682372	95683372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 5 of 8)	intron (NM_029620, intron 5 of 8)	45244.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	98.97	99.99	58.27	99.86	68.11	87.61	134.14	195.44	77.44
Merged-chr11-82016607-3	chr11	82016071	82017071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19006.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	61.78	27.19	9.25	58.03	17.26	19.29	26.4	16.36	12.49
Merged-chr4-155200992-3	chr4	155200504	155201504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	21531.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	95.53	63.13	38.85	98.51	63.91	70.73	79.21	87.55	56.83
Merged-chr16-16302900-3	chr16	16302414	16303414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038046)	promoter-TSS (NR_038046)	-51.0	NR_038046	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	175.05	169.11	84.17	162.61	169.34	189.69	156.32	148.57	113.04
Merged-chr10-100016172-2	chr10	100015676	100016676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	CpG	355.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	24.03	29.03	37.0	47.23	28.46	23.31	27.46	22.99	22.48
Merged-chr15-102136281-3	chr15	102135780	102136780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-65.0	NM_001033277	223918.0	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	42.33	26.73	31.45	38.46	27.99	40.19	38.02	24.76	19.98
Merged-chr10-69186058-3	chr10	69185559	69186559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22493.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	74.37	96.76	85.1	68.15	79.31	82.79	88.72	132.65	86.18
Merged-chr11-23008428-3	chr11	23007945	23008945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4942.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	47.48	32.25	28.67	25.64	33.59	50.64	51.75	40.68	44.34
Merged-chr16-56064545-3	chr16	56064028	56065028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 1 of 24)	(CAAAA)n|Simple_repeat|Simple_repeat	6998.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	51.48	35.94	27.75	39.81	39.19	53.05	48.58	62.79	21.86
Merged-chr19-16084486-3	chr19	16083992	16084992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48339.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	159.03	165.88	128.57	137.64	130.62	114.14	161.6	200.74	132.4
Merged-chr1-52307236-1	chr1	52306736	52307736	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74004.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	5.72	1.38	1.85	16.87	18.19	33.76	2.11	6.63	0.0
Merged-chr11-106216886-3	chr11	106216371	106217371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-55.0	NM_001361643	72047.0	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	305.48	262.19	231.24	238.85	225.32	205.77	253.48	279.01	167.37
Merged-chr3-123385964-3	chr3	123385465	123386465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	25.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	131.0	119.34	44.4	112.0	110.56	87.61	215.46	221.08	82.44
Merged-chr8-85025615-3	chr8	85025097	85026097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	-310.0	NM_001357202	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	273.44	350.2	138.74	259.09	300.43	117.35	231.3	292.71	89.93
Merged-chr15-100757660-3	chr15	100757166	100758166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4081.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	16.02	13.82	13.87	17.54	7.0	20.9	17.96	18.57	14.36
Merged-chr13-52156067-3	chr13	52155575	52156575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59334.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	92.67	94.46	57.35	119.43	94.7	68.32	82.38	105.24	72.45
Merged-chr2-36238472-3	chr2	36237970	36238970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 5 of 10)	MamGypLTR3a|LTR|Gypsy	8044.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	50.91	48.84	40.7	61.4	38.25	64.3	50.7	64.56	24.98
Merged-chr6-145553411-1	chr6	145552911	145553911	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62552.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	2.86	2.3	0.0	4.72	2.8	0.0	1.06	0.88	4.37
Merged-chr4-53250513-3	chr4	53250014	53251014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040665, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	4318.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	13.16	11.52	0.0	16.19	6.53	14.47	9.51	3.98	5.0
Merged-chr14-73552832-3	chr14	73552325	73553325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361638)	promoter-TSS (NM_001361638)	39.0	NM_001361638	20916.0	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS|SCS-betaA	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	40.04	35.48	37.0	47.23	32.66	46.62	63.37	23.43	19.98
Merged-chr18-54998641-3	chr18	54998154	54999154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6063.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	26.89	35.48	21.27	31.71	30.32	32.96	36.97	40.24	15.61
Merged-chr13-55536622-3	chr13	55536121	55537121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134059)	promoter-TSS (NM_134059)	37.0	NM_134059	72935.0	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	16.02	4.61	14.8	13.49	5.13	14.47	8.45	3.54	8.74
Merged-chr3-89998740-3	chr3	89998230	89999230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310681)	promoter-TSS (NM_001310681)	-14.0	NM_001282032	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	290.6	253.89	177.59	290.13	236.05	203.36	274.61	291.83	143.02
Merged-chr2-5861860-3	chr2	5861350	5862350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152181)	TTS (NR_152181)	1084.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	155.6	191.69	119.32	169.35	165.14	135.84	202.79	260.44	131.15
Merged-chr6-30303992-2	chr6	30303477	30304477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	CpG	562.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	462.79	327.16	246.96	457.46	256.58	220.24	416.14	273.7	169.87
Merged-chr2-25211400-3	chr2	25210856	25211856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021393, exon 1 of 13)	5' UTR (NM_021393, exon 1 of 13)	133.0	NM_021393	58202.0	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	34.9	41.01	59.2	35.76	46.65	68.32	61.26	48.2	34.35
Merged-chr3-50438234-1	chr3	50437734	50438734	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 2 of 11)	intron (NM_011990, intron 2 of 11)	5379.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	10.3	8.75	0.92	5.4	7.93	5.63	4.22	5.75	1.25
Merged-chr5-43232996-3	chr5	43232493	43233493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175937)	promoter-TSS (NM_175937)	-470.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	264.86	241.45	237.71	328.59	310.69	313.48	305.24	336.49	185.48
Merged-chr13-52596876-3	chr13	52596381	52597381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011518)	promoter-TSS (NM_011518)	-1.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	124.71	139.16	93.42	136.97	100.3	96.45	101.39	92.41	63.7
Merged-chr9-35211081-3	chr9	35210579	35211579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	-24.0	NM_001291448	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	420.46	539.58	294.14	390.66	432.45	360.1	351.71	464.28	270.42
Merged-chr1-80340923-3	chr1	80340442	80341442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313728)	promoter-TSS (NM_001313728)	-252.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	123.56	101.83	107.29	115.38	73.24	107.71	125.69	80.47	82.44
Merged-chr13-102895996-3	chr13	102895496	102896496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	135741.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	15.45	8.29	4.62	20.24	9.33	16.08	9.51	8.4	5.0
Merged-chr15-36578698-3	chr15	36578213	36579213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23140.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	8.01	9.22	7.4	11.47	6.06	11.25	11.62	20.78	8.74
Merged-chr2-4493305-3	chr2	4492812	4493812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-66442.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	24.6	14.28	29.6	18.22	11.66	16.08	34.85	29.18	16.24
Merged-chr1-191224435-3	chr1	191223942	191224942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151547)	promoter-TSS (NR_151547)	-12.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	515.42	311.03	194.24	526.28	305.1	242.74	342.2	450.13	149.89
Merged-chr12-4505529-3	chr12	4505028	4506028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18585.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	36.61	44.7	54.57	41.16	59.25	77.97	41.19	43.77	45.59
Merged-chrX-23675640-3	chrX	23675138	23676138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17413.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	13.73	16.59	9.25	10.12	6.06	17.68	11.62	12.38	12.49
Merged-chr7-89403784-3	chr7	89403267	89404267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008055)	promoter-TSS (NM_008055)	455.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	51.48	48.84	22.2	89.74	70.44	58.68	42.25	45.1	21.23
Merged-chr17-83274253-3	chr17	83273753	83274753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58970.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	160.18	149.75	141.52	116.73	91.44	116.55	138.36	158.74	100.55
Merged-chr10-62553675-3	chr10	62553152	62554152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24805.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	69.22	48.38	33.3	76.24	62.05	59.48	81.33	40.68	19.36
Merged-chr10-51455981-3	chr10	51455485	51456485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24627.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	131.57	143.76	101.74	161.93	141.82	140.66	193.28	192.78	111.17
Merged-chr8-105852013-3	chr8	105851512	105852512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177150)	promoter-TSS (NM_177150)	-4.0	NM_177150	320394.0	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	21.17	29.95	25.9	28.34	34.99	36.97	26.4	35.37	13.74
Merged-chr9-37041221-1	chr9	37040721	37041721	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	L2c|LINE|L2	106101.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.86	6.45	8.32	6.75	2.8	1.61	1.06	3.1	2.5
Merged-chr9-59485863-3	chr9	59485368	59486368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019927, intron 1 of 13)	CpG	506.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	439.91	423.46	399.58	351.53	338.69	315.89	324.25	347.99	263.55
Merged-chr11-17953885-3	chr11	17953392	17954392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	-17.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	38.33	40.55	38.85	40.48	50.85	69.13	44.36	28.3	20.61
Merged-chr8-13287755-6	chr8	13287342	13288342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172282)	promoter-TSS (NM_172282)	-171.0	NM_172282	234076.0	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	200.22	219.79	194.24	204.44	213.66	238.73	229.19	221.53	121.16
Merged-chr17-88066125-3	chr17	88065629	88066629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-838.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	219.1	182.47	193.32	201.74	120.36	176.83	227.08	153.87	107.42
Merged-chr9-16114462-3	chr9	16113960	16114960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-239904.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	55.49	54.37	38.85	56.68	58.31	43.4	54.92	76.05	43.72
Merged-chr6-118419592-3	chr6	118419139	118420139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194339)	promoter-TSS (NM_194339)	-222.0	NM_194339	213895.0	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	74.37	92.16	97.12	101.21	108.7	129.41	124.63	110.54	79.94
Merged-chr2-31061043-3	chr2	31060535	31061535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	35465.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	113.27	90.77	63.82	112.68	96.1	100.47	72.88	74.28	33.72
Merged-chr7-29155646-3	chr7	29155141	29156141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146023, intron 3 of 7)	CpG	569.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	106.97	96.3	111.92	109.98	104.5	141.47	76.05	62.35	58.08
Merged-chr1-175880662-3	chr1	175880162	175881162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012012)	promoter-TSS (NM_012012)	-116.0	NM_012012	26909.0	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	86.38	81.1	77.7	68.15	72.78	76.36	71.82	59.69	58.71
Merged-chr5-122264501-3	chr5	122263998	122264998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039153)	promoter-TSS (NM_001039153)	-38.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	43.48	40.55	24.97	43.18	37.79	34.56	29.57	38.91	26.23
Merged-chr19-15984973-3	chr19	15984471	15985471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045355)	promoter-TSS (NR_045355)	18.0	NM_198019	208518.0	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	22.88	22.12	12.95	26.31	24.26	36.17	51.75	31.84	20.61
Merged-chr10-25447381-3	chr10	25446902	25447902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	39034.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	36.04	41.47	40.7	47.9	45.72	45.01	43.3	42.01	29.35
Merged-chr2-105904587-3	chr2	105904099	105905099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028260)	promoter-TSS (NM_028260)	-35.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	55.49	49.76	56.42	44.53	52.25	53.05	69.71	65.88	46.22
Merged-chr7-143023683-3	chr7	143023173	143024173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110354, intron 4 of 4)	intron (NR_110354, intron 4 of 4)	18014.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	90.38	70.5	37.0	57.35	20.99	33.76	65.48	55.27	49.96
Merged-chr2-145468929-3	chr2	145468432	145469432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	Tigger7|DNA|TcMar-Tigger	86050.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	29.75	36.4	14.8	31.04	20.06	18.49	51.75	55.27	38.72
Merged-chr7-144915065-3	chr7	144914523	144915523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347537)	promoter-TSS (NM_001347537)	-77.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	54.35	64.51	53.65	41.83	54.11	89.22	59.15	64.56	46.22
Merged-chr7-58829337-3	chr7	58828861	58829861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009728)	TTS (NM_009728)	171159.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	32.61	29.49	11.1	23.62	20.06	22.51	25.35	17.24	22.48
Merged-chr7-25689323-3	chr7	25688821	25689821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011577, intron 1 of 6)	CpG	2319.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	183.06	136.85	121.17	188.25	173.54	111.73	189.06	190.13	108.67
Merged-chr17-24141672-3	chr17	24141173	24142173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011062)	promoter-TSS (NM_011062)	-79.0	NM_001080773	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	115.55	77.87	96.2	101.21	69.98	90.83	110.9	74.28	44.34
Merged-chr2-91194861-3	chr2	91194384	91195384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013839, exon 1 of 10)	5' UTR (NM_013839, exon 1 of 10)	151.0	NM_013839	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	152.17	103.68	136.89	136.29	85.84	118.96	168.99	130.0	104.92
Merged-chr4-53125623-1	chr4	53125123	53126123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34272.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	178.48	168.19	139.67	182.85	133.89	151.11	197.51	209.59	115.54
Merged-chr10-19015374-3	chr10	19014823	19015823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009397)	promoter-TSS (NM_009397)	87.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	222.53	184.31	121.17	223.33	184.27	143.07	233.42	263.53	90.56
Merged-chr4-135353624-1	chr4	135353124	135354124	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-410.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	156.74	146.53	145.22	180.82	144.15	188.89	168.99	223.29	136.15
Merged-chr18-23813574-3	chr18	23813092	23814092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	L1ME1|LINE|L1	9622.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	156.74	133.63	58.27	157.88	97.03	68.32	118.29	111.43	37.47
Merged-chr5-36712041-3	chr5	36711524	36712524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16003.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	27.46	45.16	43.47	47.23	35.45	65.11	52.81	61.02	55.58
Merged-chr4-134496744-3	chr4	134496224	134497224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285847)	promoter-TSS (NM_001285847)	-37.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	104.69	96.3	56.42	155.19	103.1	117.35	117.24	96.83	41.22
Merged-chr5-125292076-3	chr5	125291573	125292573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	49021.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	43.48	44.24	36.07	49.93	41.05	49.83	45.42	40.24	31.23
Merged-chr2-178020922-3	chr2	178020402	178021402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2382.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	9.72	5.07	11.1	9.45	3.73	8.04	9.51	10.17	6.25
Merged-chr7-44854817-3	chr7	44854325	44855325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290695, exon 4 of 4)	3' UTR (NM_001290695, exon 4 of 4)	-2321.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	101.25	95.38	143.37	97.16	91.44	146.29	127.8	126.46	121.16
Merged-chr16-44173077-3	chr16	44172594	44173594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-303.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	127.0	93.54	132.27	128.2	95.63	101.28	108.79	86.66	42.47
Merged-chr10-80053509-3	chr10	80053004	80054004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008162)	promoter-TSS (NM_008162)	16.0	NM_008162	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	337.51	239.61	225.69	338.71	211.79	238.73	286.23	343.12	164.88
Merged-chr5-72763180-3	chr5	72762672	72763672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 14 of 17)	intron (NM_013689, intron 14 of 17)	-10395.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	25.74	17.51	8.32	16.19	24.26	36.97	22.18	14.15	25.61
Merged-chr5-149267694-3	chr5	149267216	149268216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2712.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	123.56	170.95	112.84	113.35	149.75	124.59	74.99	121.6	88.68
Merged-chr7-80269610-3	chr7	80269113	80270113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-42.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	87.52	58.98	81.4	109.3	64.84	102.88	98.23	98.16	57.46
Merged-chrX-85573852-3	chrX	85573356	85574356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025729)	promoter-TSS (NM_025729)	-166.0	NM_001358447	66724.0	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding	36.61	52.07	22.2	53.3	36.85	27.33	40.14	28.74	29.35
Merged-chr6-86400222-3	chr6	86399725	86400725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-3075.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	168.76	91.7	98.05	163.28	69.04	99.67	171.1	105.68	74.32
Merged-chr2-91950431-3	chr2	91949925	91950925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-77.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	149.31	137.77	112.84	103.91	87.7	77.16	78.16	71.63	55.58
Merged-chr14-102827949-3	chr14	102827478	102828478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154654.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	130.43	121.19	121.17	120.1	82.11	124.59	165.82	210.91	116.79
Merged-chr11-95714065-3	chr11	95713554	95714554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	123.56	116.12	102.67	89.06	81.17	73.14	105.62	112.75	56.83
Merged-chr7-7121041-3	chr7	7120533	7121533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172738, intron 1 of 4)	intron (NM_172738, intron 1 of 4)	443.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	58.92	60.36	74.0	60.72	74.64	90.83	79.21	66.77	38.72
Merged-chr13-34107201-3	chr13	34106691	34107691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 1 of 4)	L1MEf|LINE|L1	6081.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	28.03	28.11	43.47	24.29	27.99	36.17	23.24	24.76	28.73
Merged-chr7-28796813-3	chr7	28796321	28797321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177158, exon 9 of 12)	exon (NM_177158, exon 9 of 12)	7852.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	88.67	97.23	91.57	61.4	59.71	84.4	85.55	80.92	93.05
Merged-chr3-28171450-3	chr3	28170952	28171952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-91762.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	1.72	2.76	5.55	6.75	7.0	8.04	6.34	7.96	6.87
Merged-chr8-104239738-3	chr8	104239223	104240223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 4 of 8)	PB1D10|SINE|Alu	8835.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	137.29	128.1	73.07	154.51	118.96	96.45	116.18	133.98	73.07
Merged-chr10-62602180-4	chr10	62601683	62602683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 1 of 15)	exon (NM_019553, exon 1 of 15)	115.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	274.01	248.82	217.36	236.83	274.31	249.17	268.27	298.02	182.99
Merged-chr8-83738331-3	chr8	83737823	83738823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	2988.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	233.4	226.25	160.02	168.0	125.49	107.71	192.23	243.63	113.04
Merged-chr11-97800214-3	chr11	97799719	97800719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	CpG	654.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	77.8	71.42	92.5	84.34	63.45	122.18	110.9	122.48	76.19
Merged-chr8-106140994-3	chr8	106140469	106141469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3995.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	16.59	16.13	21.27	21.59	9.8	19.29	19.01	10.17	13.74
Merged-chr11-93885789-3	chr11	93885297	93886297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	-31.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	467.94	336.37	317.26	394.71	350.81	311.87	409.8	340.47	181.74
Merged-chr8-27023762-3	chr8	27023274	27024274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-25.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	220.24	236.84	182.22	221.31	210.86	192.91	227.08	271.05	117.41
Merged-chr1-162548547-3	chr1	162548058	162549058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-213.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	114.98	135.47	151.69	123.47	189.87	161.56	168.99	249.82	126.78
Merged-chr13-49215652-2	chr13	49215170	49216170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	CpG	356.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	271.15	178.78	184.07	279.33	206.2	166.38	211.24	174.66	104.3
Merged-chr6-50596942-3	chr6	50596415	50597415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027564)	promoter-TSS (NM_027564)	-325.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	5.72	6.45	9.25	6.07	11.2	4.82	9.51	9.29	3.75
Merged-chr19-32186655-3	chr19	32186149	32187149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24364.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	57.21	41.93	18.5	64.77	62.98	47.42	21.12	19.46	12.49
Merged-chr9-95512028-3	chr9	95511538	95512538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114977)	promoter-TSS (NM_001114977)	-42.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	287.17	430.83	290.44	329.26	418.92	306.24	314.74	437.75	223.58
Merged-chr13-43864659-3	chr13	43864163	43865163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	79551.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	14.3	13.36	3.7	14.84	12.13	27.33	13.73	4.42	3.75
Merged-chr4-98923309-3	chr4	98922807	98923807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146144)	promoter-TSS (NM_146144)	-503.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	58.92	68.66	65.67	76.24	67.64	72.34	85.55	93.3	53.08
Merged-chr19-55316484-3	chr19	55315982	55316982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033573)	promoter-TSS (NM_001033573)	425.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	134.43	170.95	143.37	159.91	184.74	165.58	202.79	162.28	112.42
Merged-chr17-70849875-3	chr17	70849383	70850383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164076)	promoter-TSS (NM_001164076)	-93.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	315.77	341.44	222.91	323.19	249.58	220.24	265.1	320.13	176.12
Merged-chr17-33799450-3	chr17	33798968	33799968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-11055.0	NM_001357162	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	20.02	14.75	33.3	39.13	23.33	25.72	23.24	19.9	12.49
Merged-chr6-72098093-1	chr6	72097593	72098593	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	485.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	111.55	99.07	110.07	145.74	123.62	155.93	207.01	184.83	78.07
Merged-chr12-111430054-3	chr12	111429539	111430539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12594.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	349.52	331.3	315.41	385.94	253.78	294.19	355.93	406.35	222.33
Merged-chrX-94177973-3	chrX	94177476	94178476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34675.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	137.29	126.72	114.69	107.95	126.42	98.06	96.11	104.79	61.83
Merged-chr16-97472684-3	chr16	97472188	97473188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 7 of 7)	L1MB7|LINE|L1	-9782.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	32.61	55.29	30.52	23.62	25.19	24.92	30.63	38.91	23.73
Merged-chr5-120516275-2	chr5	120515780	120516780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	5088.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	458.21	369.09	211.81	548.55	362.01	281.33	445.71	521.32	242.94
Merged-chr5-140992484-3	chr5	140991969	140992969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175362, intron 1 of 24)	L1ME3|LINE|L1	8127.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	13.16	15.21	16.65	14.17	6.53	8.84	25.35	27.86	11.87
Merged-chr16-32430885-3	chr16	32430374	32431374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009981)	promoter-TSS (NM_009981)	-47.0	NM_009981	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	276.87	217.49	114.69	290.8	208.53	155.13	214.41	208.7	140.52
Merged-chr4-62291338-3	chr4	62290837	62291837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290518)	promoter-TSS (NM_001290518)	-210.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	17.73	19.81	29.6	21.59	16.33	24.11	38.02	33.16	28.73
Merged-chr5-135957723-3	chr5	135957203	135958203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16773.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	189.92	177.4	160.94	155.86	151.62	172.01	166.88	180.85	108.04
Merged-chr18-31760543-1	chr18	31760043	31761043	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-73.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	150.45	154.82	146.14	149.11	128.76	141.47	165.82	136.19	124.91
Merged-chr4-123750971-3	chr4	123750458	123751458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-659.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	113.84	129.48	86.95	94.46	65.78	94.04	106.67	137.51	69.95
Merged-chr1-30873086-2	chr1	30872581	30873581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9825.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	270.58	199.06	211.81	323.86	211.79	218.63	323.19	180.85	159.88
Merged-chr4-107923621-3	chr4	107923101	107924101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009949)	promoter-TSS (NM_009949)	-12.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	245.41	225.78	170.19	209.16	187.54	148.7	213.35	275.03	110.54
Merged-chr2-162976072-3	chr2	162975549	162976549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081338, exon 23 of 23)	3' UTR (NM_001081338, exon 23 of 23)	-11432.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	9.72	6.91	7.4	10.8	4.67	6.43	15.84	5.75	3.75
Merged-chr11-106819686-3	chr11	106819184	106820184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025481)	TTS (NM_025481)	30432.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	85.81	104.6	49.02	154.51	115.69	89.22	53.87	78.26	35.6
Merged-chr6-89297445-3	chr6	89296931	89297931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11706.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	35.47	19.81	20.35	37.78	26.12	14.47	13.73	14.15	4.37
Merged-chr16-87625554-3	chr16	87625092	87626092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72262.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	141.3	99.99	64.75	174.75	79.31	116.55	122.52	117.62	88.06
Merged-chr19-7235026-3	chr19	7234515	7235515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027643, intron 2 of 7)	intron (NM_027643, intron 2 of 7)	6207.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	10.87	7.37	9.25	12.14	9.8	16.88	12.67	6.19	1.87
Merged-chr16-90397061-3	chr16	90396549	90397549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	MLTR14|LTR|ERV1	10652.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	28.6	29.03	14.8	43.86	19.13	40.99	14.79	13.71	11.87
Merged-chr3-53466707-3	chr3	53466229	53467229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	2912.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	14.87	8.75	6.47	14.84	4.67	14.47	5.28	7.07	14.36
Merged-chr11-58224494-3	chr11	58223981	58224981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	9504.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	24.03	25.34	44.4	21.59	20.06	48.23	30.63	29.63	46.22
Merged-chr12-80127407-3	chr12	80126913	80127913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	5431.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	39.47	38.25	23.12	45.88	19.59	29.74	46.47	37.58	28.73
Merged-chr11-3143365-2	chr11	3142884	3143884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 19 of 32)	intron (NM_030207, intron 19 of 32)	19363.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	53.77	47.0	105.44	58.7	59.25	98.06	1.06	0.0	120.53
Merged-chr5-32785714-3	chr5	32785208	32786208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177298)	promoter-TSS (NM_177298)	-82.0	NM_177298	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	34.9	33.64	27.75	35.76	30.32	32.96	63.37	48.64	26.85
Merged-chr4-45320460-3	chr4	45319956	45320956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025513, exon 1 of 4)	exon (NM_025513, exon 1 of 4)	147.0	NM_025513	66362.0	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	187.63	225.32	168.34	210.51	242.12	207.38	130.97	132.65	119.28
Merged-chr9-118040369-3	chr9	118039876	118040876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048146)	promoter-TSS (NM_001048146)	-146.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	295.75	359.87	335.76	315.77	305.1	259.62	307.35	354.18	181.74
Merged-chr3-136670001-3	chr3	136669502	136670502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293622)	promoter-TSS (NM_001293622)	-64.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	287.74	271.4	178.52	277.98	293.43	192.91	248.2	219.76	131.78
Merged-chr9-75542067-1	chr9	75541567	75542567	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17590.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	5.72	11.98	6.47	13.49	9.33	5.63	17.96	17.24	11.87
Merged-chr2-155956521-3	chr2	155956035	155957035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001129999)	promoter-TSS (NM_001129999)	-23.0	NM_001129999	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	64.64	76.03	61.05	51.28	50.85	73.95	90.83	74.73	43.72
Merged-chr2-150788907-1	chr2	150788407	150789407	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	2111.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	18.31	9.22	20.35	16.87	12.13	25.72	22.18	12.38	18.11
Merged-chr1-92216890-3	chr1	92216406	92217406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36565.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	175.05	180.17	160.94	169.35	122.69	158.35	180.61	198.53	137.4
Merged-chr6-113638449-3	chr6	113637936	113638936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172161)	promoter-TSS (NM_172161)	-31.0	NM_172161	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	147.02	90.77	67.52	140.34	113.36	77.16	123.57	127.34	49.34
Merged-chr1-143739617-3	chr1	143739115	143740115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	0.0	NM_023505	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	71.51	84.78	62.9	89.06	81.17	92.44	102.45	77.38	58.08
Merged-chr8-116627999-3	chr8	116627499	116628499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	104992.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	169.9	182.01	183.14	122.8	105.43	79.58	219.69	256.9	122.41
Merged-chr11-29693808-3	chr11	29693309	29694309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194051)	promoter-TSS (NM_194051)	35.0	NM_194051	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	327.79	203.67	259.91	196.34	109.16	214.61	210.18	110.1	139.89
Merged-chr5-144014908-3	chr5	144014402	144015402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-49.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	69.79	83.4	87.87	88.39	71.38	83.59	94.0	92.41	86.18
Merged-chr19-55256437-3	chr19	55255932	55256932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	L1MB5|LINE|L1	3063.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	33.18	41.47	10.17	40.48	34.52	31.35	60.2	61.02	24.36
Merged-chr17-84118387-3	chr17	84117896	84118896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39736.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	117.27	84.78	85.1	130.22	99.83	132.63	76.05	66.33	36.22
Merged-chr10-5825018-3	chr10	5824519	5825519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019958)	TTS (NM_019958)	-1076.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	18.31	34.56	27.75	28.34	24.72	44.21	42.25	50.41	19.36
Merged-chr13-9191374-3	chr13	9190880	9191880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85145.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	9.72	4.15	3.7	12.82	7.46	22.51	12.67	9.29	11.87
Merged-chr11-99168192-3	chr11	99167705	99168705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13128.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	129.28	86.63	72.15	93.11	55.98	68.32	145.75	115.41	39.97
Merged-chr7-16875117-3	chr7	16874608	16875608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081655)	promoter-TSS (NM_001081655)	-209.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	42.9	92.16	51.8	51.28	71.84	73.95	64.43	99.93	52.46
Merged-chr7-44528129-3	chr7	44527626	44528626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019866, exon 6 of 6)	exon (NM_019866, exon 6 of 6)	-3457.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	73.22	43.77	11.1	71.52	83.04	21.7	30.63	30.95	9.99
Merged-chr3-16183124-3	chr3	16182612	16183612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145919)	promoter-TSS (NM_001145919)	-53.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	433.04	458.48	315.41	445.31	418.92	325.53	354.88	330.74	185.48
Merged-chr7-125607985-3	chr7	125607445	125608445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	4516.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	83.52	35.94	31.45	49.25	13.06	11.25	24.29	32.28	13.12
Merged-chr15-6579837-3	chr15	6579353	6580353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	6.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	109.83	148.83	92.5	89.74	99.83	103.69	99.28	121.6	77.44
Merged-chr13-38658613-3	chr13	38658128	38659128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025380, intron 1 of 3)	CpG	400.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	45.19	35.94	41.62	42.51	40.59	54.66	59.15	33.16	22.48
Merged-chr7-126884872-3	chr7	126884350	126885350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	117.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	43.48	41.93	24.05	26.31	31.72	29.74	45.42	26.53	31.23
Merged-chr2-52955286-3	chr2	52954777	52955777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	97409.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	193.35	162.66	86.02	210.51	173.54	161.56	164.76	221.53	93.05
Merged-chr13-9895246-3	chr13	9894737	9895737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-129916.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	1.72	3.23	0.0	9.45	0.93	4.82	3.17	1.33	0.62
Merged-chr11-80154047-3	chr11	80153542	80154542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172133)	promoter-TSS (NM_172133)	-120.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	93.82	98.61	104.52	121.45	120.83	129.41	128.85	104.79	61.83
Merged-chr9-44567834-3	chr9	44567321	44568321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37071.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	252.28	246.06	100.82	294.85	210.86	147.09	336.92	300.23	146.76
Merged-chr2-29772317-3	chr2	29771808	29772808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10780.0	NM_001177392	433416.0	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	-	predicted gene 13547	protein-coding	25.17	26.26	23.12	30.36	36.39	47.42	21.12	16.36	13.74
Merged-chr4-83266159-3	chr4	83265651	83266651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58038.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	148.73	157.59	112.84	107.95	98.43	108.51	55.98	61.9	42.47
Merged-chr4-103114738-3	chr4	103114226	103115226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146254)	promoter-TSS (NM_146254)	336.0	NM_001286222	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	105.83	86.17	99.89	78.94	83.51	115.75	109.84	74.73	75.57
Merged-chr18-32880672-3	chr18	32880175	32881175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105779)	promoter-TSS (NR_105779)	-2.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	37.18	23.5	20.35	33.06	40.12	35.37	23.24	21.22	13.74
Merged-chr15-25303228-3	chr15	25302725	25303725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110539.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	157.31	152.98	97.12	190.95	183.34	128.61	170.05	211.36	102.42
Merged-chr7-19282599-3	chr7	19282107	19283107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-17.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	8.58	5.99	11.1	8.77	6.53	4.82	8.45	7.07	16.24
Merged-chr10-34131539-3	chr10	34131044	34132044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3572.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	120.7	125.79	66.6	120.77	88.17	76.36	92.94	109.22	60.58
Merged-chr9-61948205-3	chr9	61947724	61948724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	34.32	32.25	7.4	20.24	14.0	12.86	19.01	10.61	11.87
Merged-chr3-67582766-3	chr3	67582276	67583276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025813)	promoter-TSS (NM_025813)	8.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	178.48	168.65	149.84	172.73	214.59	172.01	181.66	172.89	80.56
Merged-chr19-10790488-1	chr19	10789988	10790988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009852, intron 12 of 12)	L3|LINE|CR1	39570.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	4.58	5.53	2.77	3.37	0.93	0.0	5.28	0.44	2.5
Merged-chr1-65178345-3	chr1	65177848	65178848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	794.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	190.49	269.1	156.32	248.97	316.29	209.79	261.93	396.18	132.4
Merged-chr3-122964502-3	chr3	122964008	122965008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133857, intron 2 of 15)	intron (NM_133857, intron 2 of 15)	19939.0	NM_133857	99526.0	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	5.72	6.45	9.25	6.07	7.93	4.82	4.22	4.86	3.12
Merged-chr1-135411161-3	chr1	135410675	135411675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 5 of 24)	intron (NM_001357578, intron 5 of 24)	19316.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	29.17	41.93	14.8	36.43	19.13	13.66	17.96	23.88	19.98
Merged-chr10-50634389-3	chr10	50633889	50634889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 4 of 41)	L1M4|LINE|L1	41720.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	30.89	40.09	30.52	25.64	25.66	20.9	36.97	32.28	21.86
Merged-chr15-101259296-3	chr15	101258729	101259729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	72.65	50.23	54.57	68.82	50.38	74.75	74.99	80.03	49.96
Merged-chr7-29043716-4	chr7	29043217	29044217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	39977.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	192.21	207.81	137.82	163.28	149.75	164.78	180.61	226.39	87.43
Merged-chr12-87415573-3	chr12	87415072	87416072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22185.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	104.11	117.04	38.85	109.3	96.1	86.01	120.41	137.96	65.58
Merged-chr15-13435395-1	chr15	13434895	13435895	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-261720.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	3.43	6.45	7.4	5.4	12.6	8.04	3.17	8.4	7.49
Merged-chr14-120394987-3	chr14	120394456	120395456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360379, intron 5 of 6)	intron (NM_001360379, intron 5 of 6)	-83505.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	20.02	33.64	27.75	29.69	24.72	28.94	29.57	28.3	24.98
Merged-chr4-53120540-3	chr4	53120031	53121031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	39364.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	308.91	217.49	130.42	248.97	182.87	151.92	243.98	240.54	126.78
Merged-chr10-19939427-3	chr10	19938937	19939937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	4911.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	128.71	123.95	75.85	109.3	76.97	86.01	71.82	58.37	53.08
Merged-chr6-47594337-3	chr6	47593803	47594803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007971, intron 1 of 19)	CpG	727.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	221.96	181.09	184.99	190.95	174.94	128.61	188.0	202.51	119.91
Merged-chr8-84982818-3	chr8	84982312	84983312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4064.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	272.87	232.7	192.39	269.89	168.88	198.54	259.82	279.01	126.15
Merged-chr2-30093842-3	chr2	30093358	30094358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025428)	promoter-TSS (NM_025428)	-223.0	NM_001037762	66220.0	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	25.74	25.34	33.3	20.92	31.26	45.82	27.46	19.01	28.73
Merged-chr8-11476956-3	chr8	11476452	11477452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	-977.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	471.94	440.97	240.49	441.94	483.3	251.59	412.97	523.97	189.86
Merged-chr8-79028094-3	chr8	79027611	79028611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178267)	promoter-TSS (NM_178267)	-326.0	NM_001294279	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	9.15	2.76	1.85	14.17	13.53	6.43	8.45	3.98	7.49
Merged-chr2-132252771-3	chr2	132252274	132253274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011045, intron 1 of 5)	CpG	406.0	NM_011045	18538.0	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	207.08	164.96	104.52	181.5	195.47	118.16	143.64	183.06	56.83
Merged-chr16-57536781-3	chr16	57536309	57537309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-12433.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	203.65	218.41	122.09	219.96	128.29	168.8	124.63	168.02	94.3
Merged-chr3-146152444-2	chr3	146151949	146152949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	2275.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	77.23	66.81	40.7	48.58	34.99	39.39	2.11	1.33	9.37
Merged-chr11-93821742-3	chr11	93821250	93822250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	64016.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	16.59	4.61	7.4	62.07	41.99	61.89	63.37	45.1	49.96
Merged-chr12-35131585-3	chr12	35131091	35132091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 20 of 25)	ORR1D1-int|LTR|ERVL-MaLR	63306.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	47.48	39.17	43.47	34.41	19.13	40.19	61.26	51.73	29.35
Merged-chr8-106059416-3	chr8	106058895	106059895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-208.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	212.23	193.53	166.49	179.47	165.14	180.05	174.27	174.66	118.04
Merged-chr2-160152320-3	chr2	160151806	160152806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	135653.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	108.69	99.99	49.95	145.74	75.11	81.99	90.83	113.19	74.32
Merged-chr1-166380126-3	chr1	166379617	166380617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030245, intron 1 of 7)	intron (NM_030245, intron 1 of 7)	950.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	192.21	176.94	103.59	194.32	213.66	151.92	138.36	144.15	94.3
Merged-chr7-67380873-3	chr7	67380362	67381362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8004.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	56.63	52.53	26.82	51.28	43.39	26.53	34.85	29.63	18.74
Merged-chr7-145122670-3	chr7	145122169	145123169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85450.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	31.46	18.89	13.87	52.63	27.06	22.51	16.9	9.73	13.12
Merged-chr5-96921225-3	chr5	96920729	96921729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131152)	promoter-TSS (NR_131152)	-43.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	218.52	231.77	139.67	207.14	174.94	188.89	184.83	247.17	126.78
Merged-chr11-117832432-3	chr11	117831930	117832930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027827, exon 3 of 11)	exon (NM_027827, exon 3 of 11)	-6416.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	114.98	64.97	93.42	131.57	69.51	81.18	99.28	77.82	53.08
Merged-chr8-73233599-3	chr8	73233085	73234085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	B4|SINE|B4	119955.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	12.59	20.74	23.12	25.64	14.46	29.74	30.63	27.41	8.12
Merged-chr2-18821752-3	chr2	18821217	18822217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19899.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	141.87	178.32	102.67	149.11	142.75	125.39	151.03	189.69	116.79
Merged-chr2-11553967-3	chr2	11553504	11554504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-75.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	244.84	220.25	182.22	247.62	259.85	202.55	210.18	229.93	116.16
Merged-chr10-10325734-1	chr10	10325234	10326234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	146580.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	5.15	2.76	3.7	13.49	9.8	11.25	2.11	0.0	3.75
Merged-chr2-61711707-3	chr2	61711225	61712225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021526)	promoter-TSS (NM_021526)	31.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	164.75	167.26	108.22	186.9	161.41	135.84	165.82	130.0	57.46
Merged-chr18-74268166-3	chr18	74267654	74268654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013594)	promoter-TSS (NM_013594)	-21.0	NM_001357423	17190.0	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	100.68	124.87	93.42	79.62	93.77	107.71	118.29	96.39	71.82
Merged-chr2-13544501-3	chr2	13544002	13545002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	GC_rich|Low_complexity|Low_complexity	162.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	192.21	209.2	125.79	197.02	162.34	140.66	182.72	177.31	105.55
Merged-chr14-52009007-3	chr14	52008502	52009502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001253695, exon 3 of 5)	exon (NM_001253695, exon 3 of 5)	5556.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	4.0	3.23	3.7	3.37	1.87	0.0	3.17	2.65	3.12
Merged-chr6-39205424-3	chr6	39204902	39205902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033430, intron 1 of 19)	intron (NM_001033430, intron 1 of 19)	1371.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	227.68	242.37	196.09	243.57	226.26	178.44	236.59	224.62	131.78
Merged-chr7-123170583-5	chr7	123170113	123171113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144925, exon 6 of 24)	exon (NM_144925, exon 6 of 24)	-44253.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	85.24	77.41	47.17	71.52	29.86	64.3	17.96	29.18	21.86
Merged-chr12-87387470-3	chr12	87386964	87387964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	891.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	121.28	123.49	149.84	103.23	137.62	154.33	124.63	122.04	109.29
Merged-chr13-5802388-3	chr13	5801864	5802864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55728.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	153.88	181.55	81.4	198.37	226.72	166.38	142.59	145.47	106.79
Merged-chr1-161131470-3	chr1	161130931	161131931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039482)	promoter-TSS (NM_001039482)	48.0	NM_001039482	226541.0	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	57.21	52.07	63.82	64.77	70.44	76.36	77.1	66.33	56.21
Merged-chr9-40457637-3	chr9	40457132	40458132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-1868.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	20.02	9.68	5.55	18.22	9.8	1.61	7.39	4.42	1.25
Merged-chr4-120881229-3	chr4	120880741	120881741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	26442.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	103.54	108.75	69.37	146.41	98.9	89.22	100.34	107.45	68.7
Merged-chrX-21632699-3	chrX	21632206	21633206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-82194.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	18.88	24.88	12.95	14.84	22.39	37.78	19.01	11.05	6.25
Merged-chr14-76757692-1	chr14	76757192	76758192	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2439.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	2.86	2.76	0.0	1.35	4.67	1.61	109.84	96.39	47.46
Merged-chr7-102065315-3	chr7	102064806	102065806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286689)	promoter-TSS (NM_001286689)	-141.0	NM_001360748	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	32.04	34.1	58.27	37.78	43.85	52.25	54.92	51.73	36.22
Merged-chr1-162388726-3	chr1	162388215	162389215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 2 of 20)	intron (NM_001038619, intron 2 of 20)	89319.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	16.02	20.74	12.95	8.77	16.79	11.25	21.12	11.05	9.99
Merged-chr6-146724883-3	chr6	146724388	146725388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346666)	promoter-TSS (NM_001346666)	-42.0	NM_001346666	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	42.33	28.57	14.8	73.54	34.06	47.42	84.49	53.94	46.22
Merged-chr5-129725051-3	chr5	129724592	129725592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	17.0	NM_008095	14467.0	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	165.32	129.48	196.09	180.15	97.03	126.19	211.24	97.28	86.81
Merged-chr13-23738844-3	chr13	23738323	23739323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015786)	promoter-TSS (NM_015786)	16.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	192.21	218.41	168.34	192.29	173.07	204.16	201.73	261.32	155.51
Merged-chr4-122872131-3	chr4	122871646	122872646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 2 of 12)	intron (NM_007598, intron 2 of 12)	13930.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	90.38	117.5	40.7	63.42	84.44	64.3	92.94	87.11	49.34
Merged-chr16-91398755-1	chr16	91398255	91399255	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7480.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	405.59	319.78	245.11	391.34	276.64	207.38	299.96	409.89	197.35
Merged-chr8-11473237-3	chr8	11472761	11473761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4668.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	34.32	45.62	26.82	60.72	23.33	16.08	54.92	32.28	33.1
Merged-chr1-183264301-3	chr1	183263828	183264828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-32732.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	127.0	107.82	49.95	153.16	135.29	91.63	104.56	116.73	49.34
Merged-chr11-32532858-1	chr11	32532358	32533358	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-408.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	65.21	48.38	31.45	107.28	88.64	58.68	87.66	58.37	29.35
Merged-chr6-31109411-3	chr6	31108926	31109926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46333.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	174.48	164.96	116.54	215.91	157.21	130.21	232.36	249.38	129.28
Merged-chr10-28323211-3	chr10	28322716	28323716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	248396.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	10.87	17.97	11.1	32.39	18.19	14.47	12.67	19.01	14.36
Merged-chr6-29212347-3	chr6	29211851	29212851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011829)	promoter-TSS (NM_011829)	-54.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	137.29	76.03	81.4	150.46	87.7	76.36	134.14	76.94	59.95
Merged-chr16-76341880-3	chr16	76341382	76342382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	RMER15-int|LTR|ERVL	31167.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	52.06	37.78	30.52	36.43	26.59	21.7	49.64	76.05	19.98
Merged-chr2-153214876-3	chr2	153214397	153215397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10544.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	159.6	107.36	57.35	224.01	184.27	132.63	124.63	137.51	69.32
Merged-chr16-4879332-3	chr16	4878820	4879820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	CpG	531.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	307.19	270.02	322.81	261.12	237.92	249.17	316.86	317.92	182.36
Merged-chr15-100443684-2	chr15	100443164	100444164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	20471.0	NR_040351	432982.0	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	105.83	114.74	64.75	6.75	1.87	0.0	116.18	146.36	58.08
Merged-chr8-84701378-3	chr8	84700868	84701868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008535)	promoter-TSS (NM_008535)	-89.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	77.8	59.9	71.22	80.97	59.25	65.11	49.64	37.14	29.98
Merged-chr3-20076831-3	chr3	20076354	20077354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355097, intron 10 of 25)	B2_Mm2|SINE|B2	18563.0	NR_105047	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	42.33	39.63	25.9	30.36	34.99	40.99	29.57	42.01	37.47
Merged-chr10-127291203-2	chr10	127290699	127291699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	406.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	235.69	168.19	124.87	240.2	166.54	156.74	268.27	219.31	71.82
Merged-chr2-181581854-3	chr2	181581337	181582337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164597)	TTS (NM_001164597)	136.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	200.79	282.46	241.41	228.73	264.04	246.76	269.33	301.12	176.12
Merged-chr11-5065296-3	chr11	5064811	5065811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	16.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	28.6	17.05	35.15	23.62	18.66	40.99	32.74	19.01	24.98
Merged-chr5-50058997-3	chr5	50058454	50059454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133911)	promoter-TSS (NM_133911)	42.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	22.88	3.69	3.7	12.14	5.13	12.86	13.73	3.1	1.25
Merged-chr4-118179714-3	chr4	118179241	118180241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 1 of 21)	intron (NM_001161823, intron 1 of 21)	302.0	NM_172382	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	77.8	94.0	82.32	59.38	71.84	81.99	118.29	91.97	60.58
Merged-chr3-8924926-3	chr3	8924430	8925430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	96.11	119.34	65.67	97.83	103.1	102.88	113.01	120.71	66.2
Merged-chr2-84800516-3	chr2	84800027	84801027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	1699.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	69.22	60.82	43.47	62.07	56.45	70.73	88.72	108.33	36.22
Merged-chr3-52102113-3	chr3	52101602	52102602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	2904.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	156.74	117.04	138.74	136.97	126.42	168.8	136.25	165.81	106.79
Merged-chr2-101886230-3	chr2	101885761	101886761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029635)	promoter-TSS (NM_029635)	-1.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	94.39	83.4	41.62	89.06	101.23	72.34	120.41	124.69	47.46
Merged-chr2-112454990-3	chr2	112454494	112455494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133749)	promoter-TSS (NM_133749)	-31.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	286.6	235.92	225.69	246.27	258.91	215.42	246.09	266.63	139.27
Merged-chr5-107949840-3	chr5	107949337	107950337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	37240.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	40.04	45.16	30.52	45.88	26.12	36.17	33.8	42.01	31.23
Merged-chr7-19024263-3	chr7	19023766	19024766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	-111.0	NM_001360713	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	123.56	59.9	64.75	78.27	50.38	55.46	61.26	33.6	45.59
Merged-chr4-133159889-3	chr4	133159390	133160390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	29257.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	284.31	302.74	181.29	280.68	230.92	225.06	266.16	350.2	154.26
Merged-chr13-33004628-3	chr13	33004122	33005122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	81.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	93.24	141.92	123.02	84.34	98.9	77.97	145.75	177.31	73.69
Merged-chr10-96371132-3	chr10	96370621	96371621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144914.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	34.9	11.06	9.25	20.92	12.13	9.65	14.79	11.94	10.62
Merged-chr5-113992465-3	chr5	113991958	113992958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 1 of 14)	L1MB8|LINE|L1	1299.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	48.05	66.35	29.6	19.57	46.18	68.32	65.48	61.46	53.08
Merged-chr12-16877339-2	chr12	16876857	16877857	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17621.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	223.67	239.61	160.02	219.96	166.54	161.56	185.89	209.15	148.01
Merged-chr9-62122738-3	chr9	62122237	62123237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039595)	promoter-TSS (NR_039595)	-143.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	49.2	27.19	46.25	41.83	27.06	49.03	41.19	20.78	19.36
Merged-chr19-46486901-3	chr19	46486408	46487408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_015752, exon 12 of 12)	3' UTR (NM_015752, exon 12 of 12)	-14740.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	36.61	39.17	44.4	44.53	20.99	70.73	44.36	33.16	33.1
Merged-chr7-47022717-3	chr7	47022207	47023207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14293.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	70.36	40.09	8.32	67.47	48.98	39.39	43.3	31.39	9.37
Merged-chr9-35117538-3	chr9	35117025	35118025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-661.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	189.92	173.25	130.42	208.49	123.16	190.5	197.51	225.06	109.92
Merged-chr11-6291750-5	chr11	6291255	6292255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361904)	promoter-TSS (NM_001361904)	96.0	NM_001361903	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	433.62	428.53	353.33	409.55	360.61	279.72	491.13	481.08	199.85
Merged-chr13-46727273-3	chr13	46726882	46727882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175749, exon 1 of 22)	exon (NM_175749, exon 1 of 22)	467.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	486.25	512.85	432.88	390.66	410.99	389.03	318.97	355.5	286.03
Merged-chr8-13677141-3	chr8	13676606	13677606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	CpG	481.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	258.57	269.56	197.02	287.43	254.71	227.47	255.6	295.37	172.37
Merged-chr10-19186445-3	chr10	19185945	19186945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	19207.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	85.24	58.98	17.57	85.69	39.65	23.31	69.71	68.98	33.1
Merged-chr16-91433708-3	chr16	91433210	91434210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27475.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	17.73	7.37	11.1	15.52	14.46	3.22	9.51	7.07	16.24
Merged-chr17-17374559-3	chr17	17374064	17375064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025934, exon 1 of 10)	5' UTR (NM_025934, exon 1 of 10)	232.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	126.42	270.48	173.89	120.1	222.06	214.61	177.44	271.05	91.18
Merged-chr17-56717770-3	chr17	56717264	56718264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178926)	promoter-TSS (NM_178926)	2.0	NM_027244	69875.0	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	68.07	64.51	61.05	60.05	45.25	83.59	74.99	83.13	49.96
Merged-chr14-54770575-3	chr14	54770063	54771063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	11323.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	84.66	87.09	57.35	93.11	65.78	78.77	167.93	193.67	88.06
Merged-chr12-35294884-3	chr12	35294389	35295389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99992.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	62.93	54.83	29.6	58.03	40.12	35.37	15.84	41.56	46.22
Merged-chr7-27553159-3	chr7	27552645	27553645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011116)	promoter-TSS (NM_011116)	73.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	82.38	66.81	58.27	85.69	55.05	73.95	116.18	79.15	56.21
Merged-chr8-126884754-2	chr8	126884250	126885250	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35730.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	20.59	20.74	12.95	29.69	34.52	27.33	61.26	99.49	31.23
Merged-chr2-45049479-3	chr2	45048988	45049988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-26311.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	182.49	190.3	97.12	174.08	147.88	150.31	118.29	149.01	83.06
Merged-chr18-39519624-1	chr18	39519124	39520124	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32379.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	47.48	64.51	49.95	56.0	48.05	41.8	90.83	101.7	54.96
Merged-chr17-50504324-2	chr17	50503828	50504828	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5219.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	87.52	59.9	35.15	69.5	34.99	40.99	59.15	55.27	26.85
Merged-chr11-53805972-3	chr11	53805472	53806472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	35499.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	108.69	67.27	37.92	85.69	58.31	52.25	85.55	100.37	37.47
Merged-chr19-5843146-3	chr19	5842637	5843637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2341.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	218.52	189.38	103.59	213.89	163.28	172.01	191.17	186.59	128.03
Merged-chr7-28350681-3	chr7	28350193	28351193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	4.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	141.87	145.61	139.67	134.94	110.56	111.73	142.59	135.75	119.28
Merged-chr7-66355137-3	chr7	66354645	66355645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	26579.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	94.39	126.72	101.74	103.23	65.31	102.88	89.78	82.24	74.94
Merged-chr9-61977475-3	chr9	61977033	61978033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	MER20|DNA|hAT-Charlie	-30734.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	73.79	84.32	57.35	82.99	56.45	84.4	95.06	95.07	56.21
Merged-chrX-136172226-3	chrX	136171731	136172731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168578)	promoter-TSS (NM_001168578)	20.0	NM_001168578	66684.0	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	52.63	53.45	33.3	80.29	51.78	35.37	58.09	34.49	31.23
Merged-chr18-76930046-3	chr18	76929535	76930535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	8.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	114.98	131.32	112.84	95.81	102.63	115.75	149.98	113.19	96.8
Merged-chr5-66083537-3	chr5	66083042	66084042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	14637.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	78.37	55.75	43.47	50.6	20.53	33.76	72.88	80.47	48.71
Merged-chr7-126200482-3	chr7	126199999	126200999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311143)	promoter-TSS (NM_001311143)	2.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	262.57	209.2	148.92	244.25	244.92	164.78	204.9	221.97	109.92
Merged-chr7-31115761-3	chr7	31115273	31116273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008281)	promoter-TSS (NM_008281)	-447.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	216.24	193.53	133.19	211.86	154.88	165.58	196.45	176.87	129.28
Merged-chr5-135489262-3	chr5	135488758	135489758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	CpG	55864.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	36.61	47.92	45.32	58.03	58.78	53.05	53.87	43.33	34.35
Merged-chrM-4391-1	chrM	3891	4891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											290.03	225.78	29.6	180.82	51.32	30.54	142.59	40.24	31.23
Merged-chr4-11254229-3	chr4	11253723	11254723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178112)	promoter-TSS (NM_178112)	36.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	95.53	98.61	91.57	103.91	71.84	86.01	89.78	72.96	71.2
Merged-chr11-69685887-3	chr11	69685350	69686350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023517)	promoter-TSS (NM_023517)	-296.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	192.21	216.11	172.04	190.95	143.68	208.18	205.96	237.44	131.78
Merged-chr8-103577363-3	chr8	103576885	103577885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26414.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	52.63	53.45	24.05	55.33	70.44	46.62	69.71	58.37	46.84
Merged-chr2-30242742-3	chr2	30242234	30243234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	4965.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	68.07	59.9	75.85	78.94	75.11	71.54	66.54	97.28	50.59
Merged-chr6-70792206-3	chr6	70791713	70792713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-38.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	104.11	126.72	83.25	147.09	132.49	121.37	147.87	160.51	68.7
Merged-chr4-102574414-3	chr4	102573930	102574930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4370.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	161.32	146.53	143.37	132.92	104.5	112.53	119.35	142.38	84.94
Merged-chr14-76778437-1	chr14	76777937	76778937	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18306.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	2.86	5.07	0.0	5.4	5.13	0.0	30.63	29.63	20.61
Merged-chr1-181144283-3	chr1	181143790	181144790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026171)	promoter-TSS (NM_026171)	-86.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	91.53	88.01	73.07	78.27	87.7	55.46	103.51	89.76	57.46
Merged-chr1-172241082-3	chr1	172240586	172241586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013734, intron 11 of 22)	intron (NM_013734, intron 11 of 22)	17338.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	40.04	39.63	39.77	49.93	36.85	42.6	34.85	24.76	30.6
Merged-chr10-7212246-3	chr10	7211759	7212759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-22.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	447.35	566.76	348.71	412.93	506.16	319.91	293.62	424.04	188.61
Merged-chr13-38037210-3	chr13	38036700	38037700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027724)	promoter-TSS (NM_027724)	211.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	114.41	126.25	72.15	126.85	109.16	100.47	197.51	202.95	68.7
Merged-chr6-38974052-3	chr6	38973545	38974545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	55059.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	109.26	95.38	80.47	80.97	58.78	85.2	116.18	122.48	59.95
Merged-chr16-18877178-3	chr16	18876671	18877671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	421.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	50.91	41.47	56.42	51.28	47.58	77.97	73.93	61.46	49.34
Merged-chr7-3295862-3	chr7	3295356	3296356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093766, intron 1 of 1)	intron (NM_001093766, intron 1 of 1)	2828.0	NM_001093766	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	82.38	108.28	74.92	28.34	20.06	18.49	90.83	72.52	81.19
Merged-chr1-171917724-3	chr1	171917195	171918195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030710, exon 1 of 8)	5' UTR (NM_030710, exon 1 of 8)	233.0	NM_001347186	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	102.97	101.37	88.8	119.43	85.84	74.75	113.01	107.0	61.83
Merged-chr9-110411687-3	chr9	110411192	110412192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3482.0	NM_001081043	104831.0	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	14.87	10.14	14.8	9.45	2.8	12.86	20.07	11.94	6.25
Merged-chr13-104178392-2	chr13	104177881	104178881	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361539)	promoter-TSS (NM_001361539)	85.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	40.04	55.29	61.05	34.41	44.32	49.03	83.44	64.11	39.97
Merged-chr14-8216324-3	chr14	8215821	8216821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	73.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	132.14	135.47	74.0	141.69	182.4	78.77	182.72	250.71	65.58
Merged-chr10-80751673-3	chr10	80751166	80752166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-3537.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	208.8	158.05	93.42	199.72	118.96	118.96	155.26	208.7	110.54
Merged-chr8-78821041-3	chr8	78820524	78821524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001191004, intron 1 of 4)	CpG	128.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	128.71	130.4	110.07	135.62	126.89	90.83	144.7	114.52	63.08
Merged-chr5-102498982-3	chr5	102498475	102499475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17584.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	16.59	10.6	12.02	20.24	22.86	25.72	29.57	19.46	25.61
Merged-chr13-37642578-3	chr13	37642092	37643092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-183446.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	113.27	88.01	35.15	94.46	85.84	69.93	84.49	84.45	57.46
Merged-chr16-35981733-3	chr16	35981230	35982230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1633.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	34.9	39.17	1.85	10.8	9.33	4.82	10.56	8.84	5.0
Merged-chr7-118703281-3	chr7	118702795	118703795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	2443.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	195.07	181.55	98.05	203.76	202.0	122.98	207.01	293.6	103.67
Merged-chr16-36673368-3	chr16	36672871	36673871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7294.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	39.47	35.02	30.52	60.05	49.92	45.01	53.87	77.38	31.23
Merged-chr6-71440716-3	chr6	71440191	71441191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-54.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	153.31	127.18	148.92	178.13	109.16	152.72	196.45	153.43	89.31
Merged-chr6-121110329-3	chr6	121109825	121110825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20697.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	17.73	14.28	9.25	23.62	17.73	28.13	35.91	25.2	9.99
Merged-chr17-36083575-2	chr17	36083055	36084055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008199, intron 2 of 5)	CpG-6344	694.0	NM_008199	14963.0	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	9.15	2.76	0.0	2.02	5.13	0.0	4.22	9.73	2.5
Merged-chr12-85475146-3	chr12	85474650	85475650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010234, exon 2 of 4)	exon (NM_010234, exon 2 of 4)	1260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	122.99	78.33	61.97	105.93	89.1	91.63	70.76	70.3	55.58
Merged-chr10-120141314-3	chr10	120140808	120141808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028679)	TTS (NM_028679)	-28343.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	13.73	20.27	21.27	15.52	24.26	28.94	45.42	36.26	32.48
Merged-chr9-75408002-3	chr9	75407499	75408499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	1360.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	70.36	76.03	29.6	65.45	77.44	48.23	116.18	126.46	51.21
Merged-chr10-91123431-3	chr10	91122914	91123914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133668, intron 2 of 7)	intron (NM_133668, intron 2 of 7)	549.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	399.29	402.26	281.19	348.83	356.41	287.76	315.8	303.77	212.96
Merged-chr10-67696159-3	chr10	67695742	67696742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124283.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	70.93	58.06	72.15	85.69	47.12	61.89	48.58	52.62	39.97
Merged-chr2-131204696-3	chr2	131204209	131205209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5651.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	273.44	316.1	162.79	356.93	333.09	219.43	243.98	316.59	141.14
Merged-chr2-155473867-3	chr2	155473362	155474362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-33079.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	93.82	35.48	91.57	111.33	29.39	53.05	92.94	38.91	30.6
Merged-chr14-103115572-3	chr14	103115071	103116071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 84 of 84)	intron (NM_207215, intron 84 of 84)	-16005.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	21.17	17.51	9.25	10.8	10.73	12.86	13.73	8.4	6.25
Merged-chr16-76363216-3	chr16	76362735	76363735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9814.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	113.84	94.46	80.47	96.48	82.11	77.97	105.62	99.93	56.83
Merged-chr16-4371231-3	chr16	4370753	4371753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	49245.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	34.32	29.49	10.17	49.25	45.72	22.51	33.8	22.99	14.99
Merged-chr11-89031378-3	chr11	89030886	89031886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29362.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	45.76	35.02	45.32	45.21	40.12	36.97	89.78	84.45	30.6
Merged-chr18-23430776-1	chr18	23430276	23431276	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15367.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	2.29	4.15	0.0	12.14	13.06	14.47	14.79	7.52	2.5
Merged-chr1-155159159-1	chr1	155158659	155159659	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021433, intron 1 of 7)	CpG	456.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	109.26	66.35	57.35	98.51	74.17	64.3	111.96	55.71	30.6
Merged-chr5-99327260-3	chr5	99326738	99327738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-74311.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	229.97	225.78	127.64	234.8	236.99	160.76	202.79	259.11	133.65
Merged-chr7-28374864-3	chr7	28374356	28375356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2194.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	112.12	101.83	98.05	96.48	75.11	120.57	111.96	126.9	84.31
Merged-chr6-51611854-3	chr6	51611325	51612325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66532.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	21.74	20.74	19.42	25.64	20.06	24.92	26.4	11.94	40.59
Merged-chr1-172478196-3	chr1	172477711	172478711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029612, exon 4 of 4)	exon (NM_029612, exon 4 of 4)	2851.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	8.58	6.91	12.95	13.49	7.93	12.06	15.84	14.59	8.74
Merged-chr15-98937034-3	chr15	98936568	98937568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	108.69	82.48	82.32	62.75	39.19	69.93	88.72	93.3	63.08
Merged-chr3-96696411-3	chr3	96695916	96696916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146135)	promoter-TSS (NM_146135)	41.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	16.02	22.58	46.25	20.92	14.93	39.39	30.63	23.88	33.1
Merged-chr1-125454684-3	chr1	125454202	125455202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18975.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	38.9	23.5	19.42	53.3	55.05	43.4	29.57	53.5	21.86
Merged-chr11-96765822-3	chr11	96765291	96766291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11764.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	144.73	146.53	71.22	155.19	115.23	127.0	99.28	141.94	125.53
Merged-chr9-7346122-3	chr9	7345697	7346697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	-1177.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	75.51	87.55	51.8	97.16	96.1	103.69	54.92	53.5	50.59
Merged-chr14-45608498-3	chr14	45608000	45609000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	49553.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	18.88	13.36	22.2	18.89	11.2	13.66	104.56	99.49	28.1
Merged-chr2-170321645-3	chr2	170321138	170322138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34723.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	85.81	124.41	81.4	116.73	93.77	75.56	103.51	131.32	66.82
Merged-chr11-87426909-3	chr11	87426412	87427412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-679.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	248.27	137.31	85.1	193.64	83.51	86.01	153.15	131.77	50.59
Merged-chr16-22446090-3	chr16	22445615	22446615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6545.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	97.82	119.8	83.25	89.06	58.31	59.48	80.27	95.07	80.56
Merged-chr2-52924521-3	chr2	52924020	52925020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	66652.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	109.83	111.51	51.8	142.37	104.96	103.69	98.23	114.52	56.83
Merged-chr7-141539886-3	chr7	141539378	141540378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142681)	promoter-TSS (NM_001142681)	-21.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	60.07	76.95	90.65	80.29	67.64	101.28	92.94	98.16	78.07
Merged-chr1-92973073-3	chr1	92972554	92973554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104529)	promoter-TSS (NM_001104529)	-65.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	173.33	148.37	128.57	201.07	164.21	187.28	226.02	222.41	118.66
Merged-chr11-86587016-3	chr11	86586517	86587517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-2859.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	239.12	199.06	123.94	253.69	187.54	169.6	194.34	303.77	105.55
Merged-chr1-36554727-3	chr1	36554222	36555222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 2 of 14)	intron (NM_001304329, intron 2 of 14)	2835.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	37.76	39.63	46.25	35.09	22.86	24.92	34.85	29.18	24.98
Merged-chr12-103347612-3	chr12	103347114	103348114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8387.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	141.3	135.01	86.95	134.27	94.23	60.28	117.24	102.58	54.96
Merged-chrX-106634986-3	chrX	106634482	106635482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-31303.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	17.73	22.12	25.9	16.87	8.4	17.68	23.24	8.4	17.49
Merged-chr2-102998551-3	chr2	102998041	102999041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74972.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	27.46	23.5	16.65	79.62	44.78	16.08	46.47	34.05	12.49
Merged-chr19-38930901-3	chr19	38930399	38931399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-91.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	8.58	11.06	14.8	22.94	9.33	12.86	13.73	8.4	11.24
Merged-chr7-27329520-3	chr7	27329015	27330015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113549, intron 3 of 29)	CpG	4133.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	5.72	3.23	0.0	4.72	6.06	3.22	6.34	3.98	6.87
Merged-chrUn_JH584304-20694-1	chrUn_JH584304	20194	21194	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	38995.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	97.17	84.9	0.0
Merged-chr10-58446812-3	chr10	58446314	58447314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-38.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	755.68	810.98	520.75	662.57	756.21	491.11	515.42	717.64	383.46
Merged-chr4-59783940-3	chr4	59783457	59784457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013577)	promoter-TSS (NM_001013577)	-102.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	136.15	139.62	140.59	145.06	146.02	125.39	136.25	142.38	73.07
Merged-chr5-125394372-3	chr5	125393852	125394852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-4335.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	298.61	287.53	174.82	252.34	221.59	210.59	239.75	271.49	119.91
Merged-chr7-81762885-3	chr7	81762392	81763392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025997)	promoter-TSS (NM_025997)	-61.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	73.22	62.67	62.9	76.92	73.24	64.3	78.16	54.83	43.09
Merged-chr15-102459112-3	chr15	102458621	102459621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-49.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	108.69	154.36	54.57	91.76	104.5	122.18	117.24	139.72	95.55
Merged-chrX-159371987-3	chrX	159371511	159372511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025437)	promoter-TSS (NM_025437)	-167.0	NM_025437	66235.0	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay|eIF-4C	eukaryotic translation initiation factor 1A, X-linked	protein-coding	38.9	22.58	27.75	29.01	32.19	40.99	25.35	27.86	14.99
Merged-chr8-34154558-3	chr8	34154098	34155098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026432)	promoter-TSS (NM_026432)	35.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	402.73	527.6	320.96	405.51	505.7	252.39	342.2	470.02	226.7
Merged-chr7-44246628-3	chr7	44246090	44247090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025880)	promoter-TSS (NM_025880)	-132.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	256.28	249.75	179.44	251.67	233.72	253.19	245.04	221.53	154.26
Merged-chr18-50053416-3	chr18	50052912	50053912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134131, exon 1 of 2)	5' UTR (NM_134131, exon 1 of 2)	130.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	206.51	192.61	184.07	168.0	170.28	161.56	157.37	161.39	102.42
Merged-chr12-41024036-3	chr12	41023561	41024561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-29.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	74.37	84.78	65.67	95.81	80.24	88.42	81.33	82.24	59.95
Merged-chr9-7571380-3	chr9	7570877	7571877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-19.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	86.38	134.55	99.89	129.55	162.34	151.92	191.17	267.07	134.9
Merged-chr11-101069992-3	chr11	101069491	101070491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013792)	promoter-TSS (NM_013792)	-103.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	233.4	157.59	78.62	259.09	209.0	122.18	165.82	168.02	56.21
Merged-chr17-42924963-3	chr17	42924466	42925466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48542.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	80.66	76.95	86.95	68.82	61.11	81.99	94.0	115.41	65.58
Merged-chr4-62329534-3	chr4	62329056	62330056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	31040.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	110.41	145.61	65.67	94.46	128.76	83.59	162.65	148.57	77.44
Merged-chr4-46277477-2	chr4	46276969	46277969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66725.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	9.15	7.37	11.1	7.42	10.26	9.65	0.0	0.44	0.0
Merged-chr2-120404142-3	chr2	120403620	120404620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-4.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	198.5	176.48	146.14	159.91	149.28	165.58	177.44	262.21	86.81
Merged-chr3-31134845-3	chr3	31134337	31135337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-15083.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	80.66	76.49	49.02	87.04	47.12	84.4	85.55	85.78	78.07
Merged-chr9-72133346-3	chr9	72132874	72133874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21555.0	NM_011544	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	105.26	107.36	90.65	145.74	143.22	139.86	127.8	84.45	76.82
Merged-chr1-133856441-1	chr1	133855941	133856941	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50732.0	NM_054076	269120.0	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	5.15	2.76	4.62	11.47	0.47	1.61	3.17	1.33	5.0
Merged-chr11-43352022-3	chr11	43351522	43352522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22439.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	81.8	93.54	53.65	71.52	43.85	49.03	31.69	38.03	31.85
Merged-chr6-108571391-3	chr6	108570886	108571886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51781.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	85.81	69.12	46.25	130.22	125.96	108.51	70.76	65.88	31.23
Merged-chr10-78425716-3	chr10	78425212	78426212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007793)	promoter-TSS (NM_007793)	42.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	189.35	190.76	191.47	215.23	290.63	167.99	231.3	268.4	117.41
Merged-chr8-123254216-3	chr8	123253744	123254744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020497)	promoter-TSS (NM_020497)	-22.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	62.35	58.98	90.65	93.11	71.84	81.18	91.89	72.07	82.44
Merged-chr7-45591970-3	chr7	45591430	45592430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16754.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	258.0	246.98	97.12	190.95	126.42	83.59	194.34	241.87	103.05
Merged-chr4-115839167-3	chr4	115838683	115839683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-15.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	231.11	265.41	165.57	213.21	196.87	171.21	224.97	299.79	134.27
Merged-chr2-44956455-3	chr2	44955938	44956938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66739.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	221.96	240.07	84.17	166.66	182.4	78.77	192.23	183.5	108.67
Merged-chr2-73547435-3	chr2	73546936	73547936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17949.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	25.17	16.13	12.95	29.69	19.13	12.86	19.01	21.22	19.36
Merged-chr17-84466258-3	chr17	84465782	84466782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183021)	promoter-TSS (NM_183021)	-74.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	99.54	111.51	72.15	114.03	132.95	110.92	136.25	107.0	44.34
Merged-chr3-36863663-1	chr3	36863163	36864163	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172679, intron 1 of 85)	intron (NM_172679, intron 1 of 85)	557.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	126.42	135.01	75.85	138.32	118.03	71.54	132.02	131.32	87.43
Merged-chr18-77047371-3	chr18	77046858	77047858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027721)	promoter-TSS (NM_027721)	-62.0	NM_027721	71206.0	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	10.3	11.52	3.7	16.87	10.73	12.06	8.45	12.82	7.49
Merged-chr2-127270165-3	chr2	127269664	127270664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139308)	promoter-TSS (NM_139308)	-65.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	331.79	273.25	258.06	385.94	425.92	291.78	308.41	309.96	195.48
Merged-chr19-12435107-5	chr19	12434637	12435637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7232.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	297.47	240.07	189.62	288.1	205.73	166.38	251.37	298.91	131.78
Merged-chr1-156718563-3	chr1	156718094	156719094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145413, intron 1 of 7)	CpG	316.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	42.9	37.32	42.55	55.33	40.59	52.25	64.43	41.56	35.6
Merged-chr1-95624527-3	chr1	95624047	95625047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	43047.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	84.66	73.73	38.85	89.74	66.24	31.35	68.65	80.47	37.47
Merged-chr13-96670960-3	chr13	96670471	96671471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008255)	promoter-TSS (NM_008255)	-35.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	276.3	294.44	190.54	292.83	301.36	209.79	298.9	272.82	171.12
Merged-chrX-94234740-3	chrX	94234264	94235264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153165)	promoter-TSS (NM_153165)	-166.0	NM_001039059	236904.0	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	175.62	182.01	155.39	180.15	176.81	155.13	215.46	151.66	99.92
Merged-chr2-11332661-3	chr2	11332154	11333154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	88.1	59.9	54.57	118.75	132.49	69.93	103.51	88.88	33.72
Merged-chr13-17960829-2	chr13	17960335	17961335	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16618.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	6.29	1.38	5.55	9.45	3.73	6.43	4.22	7.96	6.25
Merged-chr7-79884144-3	chr7	79883645	79884645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	L1MB2|LINE|L1	-35935.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	36.04	39.17	37.92	43.18	21.46	20.09	32.74	22.55	43.72
Merged-chr7-28347946-3	chr7	28347441	28348441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2748.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	68.07	55.75	44.4	58.7	19.13	45.01	59.15	25.65	28.1
Merged-chr9-45300592-3	chr9	45300069	45301069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18531.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	190.49	140.54	80.47	145.06	118.49	102.88	118.29	118.5	64.95
Merged-chr3-63929315-3	chr3	63928795	63929795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357824)	promoter-TSS (NM_001357824)	177.0	NM_177856	329659.0	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	60.64	58.98	42.55	90.41	73.71	63.5	90.83	63.67	51.21
Merged-chr13-52042066-3	chr13	52041559	52042559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54682.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	114.98	124.87	117.47	135.62	131.09	149.5	144.7	195.88	88.68
Merged-chr7-16049665-3	chr7	16049112	16050112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22233.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	315.77	359.87	166.49	300.92	241.65	206.57	162.65	191.02	112.42
Merged-chr4-126096636-3	chr4	126096144	126097144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138721)	promoter-TSS (NM_138721)	-9.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	126.42	103.22	63.82	128.87	118.03	86.81	90.83	103.91	51.21
Merged-chr7-25250804-3	chr7	25250317	25251317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-59.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	237.97	188.92	142.44	199.72	133.89	179.24	197.51	207.38	124.91
Merged-chr10-18022476-3	chr10	18021954	18022954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028440, intron 1 of 2)	intron (NM_028440, intron 1 of 2)	636.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	108.69	125.79	66.6	96.48	111.03	114.94	139.42	91.53	55.58
Merged-chr1-181151356-3	chr1	181150841	181151841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030131, intron 1 of 4)	CpG	410.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	80.09	45.16	33.3	47.9	45.72	39.39	55.98	30.95	19.98
Merged-chr18-20741678-3	chr18	20741182	20742182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4722.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	102.97	107.36	56.42	194.32	156.75	151.11	148.92	151.22	56.21
Merged-chr2-132094626-3	chr2	132094148	132095148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	intron (NM_001355431, intron 2 of 6)	50460.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	133.86	128.1	117.47	130.9	109.16	106.1	108.79	133.53	79.94
Merged-chr11-97718540-3	chr11	97718038	97719038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	15104.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	82.95	66.35	51.8	91.76	46.18	57.07	85.55	85.78	34.97
Merged-chr4-101653628-3	chr4	101653147	101654147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	MTD|LTR|ERVL-MaLR	5864.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	100.11	141.0	86.02	117.4	110.56	141.47	126.74	141.94	97.43
Merged-chr9-116139739-3	chr9	116139238	116140238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	35625.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	133.86	135.01	97.12	153.84	152.08	101.28	133.08	146.8	73.07
Merged-chr2-66210089-3	chr2	66209596	66210596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290669, exon 20 of 28)	exon (NM_001290669, exon 20 of 28)	46521.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	4.0	5.99	1.85	6.75	3.73	1.61	1.06	1.33	0.62
Merged-chr7-80198469-3	chr7	80198005	80199005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	64.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	108.69	76.95	98.05	122.8	107.76	127.8	127.8	116.73	69.95
Merged-chr13-13954484-3	chr13	13953973	13954973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362404)	promoter-TSS (NM_001362404)	-201.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	72.08	53.45	49.95	69.5	67.18	77.97	72.88	50.85	39.97
Merged-chr1-156471282-3	chr1	156470813	156471813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3015.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	206.51	217.49	137.82	226.71	213.66	157.54	223.91	238.77	120.53
Merged-chr5-29735883-3	chr5	29735356	29736356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-42.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	497.11	617.45	478.2	557.99	610.19	362.51	538.65	567.3	336.62
Merged-chr5-139372278-3	chr5	139371774	139372774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	CpG	-2529.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	390.71	385.68	223.84	431.14	343.35	305.44	339.04	480.64	239.82
Merged-chr19-8829848-3	chr19	8829326	8830326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081196, exon 11 of 14)	exon (NM_001081196, exon 11 of 14)	-7641.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	63.5	50.69	46.25	39.13	35.45	54.66	47.53	46.43	48.71
Merged-chr6-33837037-3	chr6	33836516	33837516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-192432.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	29.17	52.53	20.35	33.74	36.85	49.83	42.25	68.54	38.72
Merged-chrX-68679177-3	chrX	68678678	68679678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033481)	promoter-TSS (NR_033481)	637.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	158.46	143.76	126.72	114.7	149.75	104.49	119.35	91.97	86.18
Merged-chr4-136310910-3	chr4	136310389	136311389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028871)	promoter-TSS (NM_028871)	-53.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	118.99	128.1	107.29	110.65	99.83	113.33	133.08	105.68	98.68
Merged-chr11-120305258-3	chr11	120304758	120305758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	42155.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	12.59	2.76	7.4	4.05	2.8	2.41	2.11	3.54	1.25
Merged-chr10-81266770-3	chr10	81266264	81267264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025317, intron 1 of 2)	CpG	162.0	NM_025317	66047.0	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	325.5	267.72	147.99	283.38	254.25	176.83	250.32	302.0	110.54
Merged-chr11-76847040-3	chr11	76846539	76847539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007754)	promoter-TSS (NM_007754)	-31.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	47.48	35.48	16.65	56.68	25.66	42.6	32.74	16.36	21.86
Merged-chr16-90143897-3	chr16	90143402	90144402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1665.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	4.58	8.29	1.85	6.07	5.6	3.22	13.73	5.75	0.0
Merged-chr6-114742405-3	chr6	114741904	114742904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 18 of 19)	intron (NM_001253718, intron 18 of 19)	99307.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	21.74	27.65	42.55	25.64	20.99	45.01	25.35	28.74	26.85
Merged-chr3-127837578-3	chr3	127837076	127838076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346718)	promoter-TSS (NM_001346718)	-53.0	NM_145964	211556.0	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	95.53	70.5	108.22	102.56	99.37	90.83	74.99	68.54	56.83
Merged-chr14-8112147-2	chr14	8111655	8112655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	13944.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	69.79	56.68	25.9	85.69	66.71	27.33	117.24	69.86	35.6
Merged-chr14-73222755-3	chr14	73222254	73223254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-15137.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	60.07	65.89	44.4	74.89	62.05	49.83	53.87	73.4	43.09
Merged-chr19-8807040-3	chr19	8806539	8807539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4509.0	NM_001098237	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	71.51	97.69	80.47	68.15	49.92	85.2	100.34	114.96	93.68
Merged-chr19-56744392-3	chr19	56743898	56744898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22026.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	220.24	249.28	172.97	244.25	269.64	165.58	221.8	318.8	159.25
Merged-chr13-98926441-3	chr13	98925925	98926925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-41.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	501.12	461.71	340.38	456.78	410.99	330.36	384.45	302.0	217.96
Merged-chr19-4182051-3	chr19	4181555	4182555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6576.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	80.66	57.6	36.07	68.82	28.92	18.49	24.29	22.11	15.61
Merged-chr7-84688120-3	chr7	84687599	84688599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	-1541.0	NR_038175	72495.0	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	92.1	130.86	57.35	107.28	84.44	83.59	96.11	98.6	69.95
Merged-chr2-160361678-3	chr2	160361195	160362195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5370.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	57.78	47.46	36.07	53.3	32.66	49.83	62.31	50.85	31.85
Merged-chr7-126776878-3	chr7	126776380	126777380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026875)	promoter-TSS (NM_026875)	-95.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	71.51	58.52	74.92	93.11	66.24	62.7	68.65	81.8	44.34
Merged-chr7-43671192-3	chr7	43670678	43671678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-853.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	312.34	282.92	233.09	282.71	164.68	262.84	320.02	372.75	223.58
Merged-chr13-112753529-3	chr13	112753039	112754039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47238.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	9.72	5.99	18.5	20.92	13.53	27.33	15.84	15.03	15.61
Merged-chr6-114843047-3	chr6	114842541	114843541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78780.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	100.11	122.57	63.82	66.8	64.84	77.97	101.39	80.92	60.58
Merged-chr11-23305815-2	chr11	23305301	23306301	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1094.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	256.28	319.78	220.14	247.62	282.7	197.73	266.16	271.49	184.86
Merged-chr19-40647698-3	chr19	40647208	40648208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-12062.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	79.52	89.85	101.74	89.06	71.38	116.55	94.0	80.47	63.08
Merged-chr13-112395153-3	chr13	112394659	112395659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68911.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	89.81	72.8	84.17	94.46	41.05	53.85	67.6	70.75	65.58
Merged-chr6-115901261-3	chr6	115900741	115901741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30686.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	38.9	28.57	11.1	45.21	25.19	27.33	36.97	26.09	13.12
Merged-chr3-60472634-1	chr3	60472134	60473134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-196.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	67.5	91.7	61.97	75.57	73.71	87.61	122.52	120.27	77.44
Merged-chr1-52630709-3	chr1	52630226	52631226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142647)	promoter-TSS (NM_001142647)	21.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	72.65	94.0	24.05	63.42	46.18	49.83	84.49	68.54	34.97
Merged-chr5-64612241-1	chr5	64611741	64612741	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1542.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	6.86	12.44	6.47	14.17	5.6	12.06	5.28	10.17	5.0
Merged-chr12-17679747-3	chr12	17679256	17680256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11053.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	183.06	188.46	163.72	177.45	116.63	147.9	224.97	212.24	114.29
Merged-chr2-77276319-3	chr2	77275826	77276826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	4266.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	40.04	50.69	24.97	36.43	48.98	43.4	47.53	35.82	31.23
Merged-chr10-82697539-3	chr10	82697035	82698035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1472.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	42.33	35.94	32.37	27.66	27.06	37.78	79.21	54.83	32.48
Merged-chr16-70314220-5	chr16	70313745	70314745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028803, exon 1 of 16)	exon (NM_028803, exon 1 of 16)	296.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	248.27	202.75	147.99	240.87	173.07	185.68	233.42	194.11	124.91
Merged-chr11-116767921-2	chr11	116767423	116768423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011371, intron 3 of 8)	intron (NM_011371, intron 3 of 8)	7584.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	47.48	23.5	25.9	34.41	20.53	9.65	3.17	1.77	3.75
Merged-chr3-90213680-3	chr3	90213127	90214127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027015)	promoter-TSS (NM_027015)	20.0	NM_001190258	100043813.0	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	204.8	211.96	157.24	205.11	215.99	131.82	171.1	202.51	101.8
Merged-chr10-80702620-3	chr10	80702117	80703117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-76.0	NM_027829	71564.0	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	54.35	51.61	56.42	56.68	43.39	90.83	60.2	49.96	56.21
Merged-chr7-116607298-3	chr7	116606796	116607796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102927.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	60.64	62.21	44.4	55.33	35.45	68.32	63.37	68.09	34.35
Merged-chr2-28591663-3	chr2	28591175	28592175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-8396.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	36.04	25.8	2.77	26.31	19.13	12.06	11.62	17.69	5.0
Merged-chr11-3185940-3	chr11	3185432	3186432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	B1_Mur4|SINE|Alu	7531.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	58.92	64.05	82.32	58.7	79.31	136.64	102.45	65.44	121.78
Merged-chr1-9806081-3	chr1	9805597	9806597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	7967.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	22.88	25.34	14.8	20.24	20.06	25.72	19.01	24.32	14.99
Merged-chr16-73957851-2	chr16	73957348	73958348	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358493, intron 16 of 28)	intron (NM_001358493, intron 16 of 28)	384219.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	5.15	0.92	1.85	9.45	4.2	8.04	7.39	2.21	13.12
Merged-chr13-100104021-3	chr13	100103517	100104517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081061)	promoter-TSS (NM_001081061)	53.0	NM_001081061	544971.0	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	85.24	101.83	74.92	76.24	72.31	66.71	97.17	91.09	61.83
Merged-chr7-141437656-3	chr7	141437152	141438152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360523)	TTS (NM_001360523)	222.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	28.6	18.43	39.77	23.62	17.26	35.37	52.81	30.51	14.99
Merged-chr5-103760921-3	chr5	103760438	103761438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	6365.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	77.23	91.24	51.8	64.77	44.78	46.62	66.54	50.41	33.72
Merged-chr2-129570909-3	chr2	129570424	129571424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-21915.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	72.65	51.61	35.15	26.99	8.4	19.29	49.64	59.25	27.48
Merged-chr17-3115743-3	chr17	3115233	3116233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 1 of 19)	intron (NM_134123, intron 1 of 19)	761.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	218.52	176.94	139.67	186.22	161.41	118.96	173.21	110.1	99.92
Merged-chr2-150904721-3	chr2	150904227	150905227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024465)	promoter-TSS (NM_024465)	4.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	167.61	151.14	171.12	197.69	145.55	148.7	159.48	169.79	116.16
Merged-chr15-9748849-3	chr15	9748311	9749311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177123)	promoter-TSS (NM_177123)	57.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	24.03	16.13	8.32	20.92	19.59	24.11	22.18	13.71	13.74
Merged-chr16-48831511-1	chr16	48831011	48832011	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11041.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	25.74	45.62	12.95	42.51	29.86	25.72	35.91	42.01	31.85
Merged-chr15-50361954-3	chr15	50361449	50362449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	527100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	59.49	70.96	59.2	122.8	96.1	95.65	119.35	128.67	64.33
Merged-chr16-58475028-3	chr16	58474529	58475529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 7 of 10)	intron (NM_001357433, intron 7 of 10)	48397.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	54.35	65.89	37.92	91.76	57.85	51.44	36.97	35.37	43.72
Merged-chr3-135691492-3	chr3	135690999	135691999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008689)	promoter-TSS (NM_008689)	48.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	288.89	265.41	241.41	273.26	183.34	165.58	242.92	149.45	152.38
Merged-chr4-131910077-1	chr4	131909577	131910577	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102393, intron 3 of 4)	RLTR31D_MM|LTR|ERVK	9952.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	127.0	109.67	62.9	207.14	160.48	135.84	80.27	104.35	32.48
Merged-chr16-22436307-3	chr16	22435812	22436812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358428, intron 2 of 12)	(A)n|Simple_repeat|Simple_repeat	2056.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	20.02	15.67	12.02	16.87	5.6	16.88	10.56	10.61	6.87
Merged-chr11-31671934-3	chr11	31671432	31672432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024919)	promoter-TSS (NM_001024919)	-70.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	75.51	65.89	25.9	107.95	55.98	55.46	103.51	65.88	19.98
Merged-chr7-67951747-3	chr7	67951223	67952223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010513)	promoter-TSS (NM_010513)	-534.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	48.62	36.4	61.05	85.69	52.25	61.09	51.75	25.2	14.36
Merged-chr7-45154401-3	chr7	45153862	45154862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278207)	promoter-TSS (NM_001278207)	59.0	NM_001278207	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	448.49	432.68	349.63	385.26	376.94	352.86	384.45	384.24	204.22
Merged-chr4-141139827-3	chr4	141139304	141140304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025608)	promoter-TSS (NM_001025608)	-8.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	153.88	169.57	136.89	146.41	95.17	98.87	141.53	161.83	95.55
Merged-chr9-59749078-3	chr9	59748574	59749574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	1575.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	125.28	154.36	109.14	143.71	91.44	81.99	114.07	138.84	68.7
Merged-chr9-36726710-3	chr9	36726156	36727156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007691)	promoter-TSS (NM_007691)	2.0	NM_007691	12649.0	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	17.16	18.43	20.35	22.27	29.86	43.4	35.91	36.7	13.12
Merged-chr17-35917741-5	chr17	35917234	35918234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035445)	promoter-TSS (NR_035445)	-155.0	NR_035445	100316810.0		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	386.71	382.91	181.29	308.35	186.14	159.15	306.29	351.52	179.86
Merged-chr5-29854600-3	chr5	29854099	29855099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118663.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	78.37	91.7	66.6	97.83	63.91	90.02	70.76	58.37	71.2
Merged-chr11-96777672-3	chr11	96777185	96778185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163389)	promoter-TSS (NM_001163389)	-130.0	NM_001163389	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	60.64	78.33	62.9	72.87	47.58	86.01	63.37	72.96	48.09
Merged-chr1-152902437-1	chr1	152901937	152902937	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160257, intron 1 of 23)	CpG	208.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	180.2	125.33	166.49	174.75	89.1	127.8	155.26	119.83	105.55
Merged-chr4-63399370-4	chr4	63398838	63399838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1098.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	152.17	111.97	81.4	139.67	112.9	106.9	120.41	135.3	54.33
Merged-chr14-118578078-3	chr14	118577584	118578584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	ORR1E|LTR|ERVL-MaLR	14388.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	27.46	13.82	12.02	20.92	14.93	8.84	17.96	15.92	6.25
Merged-chr11-114745345-3	chr11	114744843	114745843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	17931.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	14.3	9.68	10.17	14.17	9.33	6.43	11.62	6.63	6.25
Merged-chr18-62478334-1	chr18	62477834	62478834	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65518.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	2.86	1.38	0.0	1.35	2.8	0.0	19.01	7.52	5.62
Merged-chr11-75588123-3	chr11	75587631	75588631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008850)	promoter-TSS (NM_008850)	52.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	414.74	252.51	259.91	271.24	170.28	244.35	213.35	227.27	161.13
Merged-chr10-85917109-3	chr10	85916605	85917605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302886)	promoter-TSS (NM_001302886)	-119.0	NM_001302886	72843.0	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	125.28	99.53	88.8	93.79	89.1	72.34	108.79	67.21	60.58
Merged-chr2-68472105-3	chr2	68471608	68472608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016866)	promoter-TSS (NM_016866)	-127.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	7.44	4.15	5.55	12.82	3.73	0.0	13.73	4.86	3.75
Merged-chr19-60598424-3	chr19	60597913	60598913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17390.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	71.51	62.21	25.9	112.0	114.76	86.01	110.9	147.68	61.2
Merged-chrX-12135227-3	chrX	12134717	12135717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 3 of 3)	intron (NR_045434, intron 3 of 3)	25129.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	48.62	20.74	29.6	38.46	16.79	21.7	27.46	13.27	12.49
Merged-chr13-3611164-3	chr13	3610660	3611660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134063)	promoter-TSS (NM_134063)	-52.0	NM_001360838	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	208.8	212.42	191.47	197.02	142.29	185.68	208.07	174.21	139.27
Merged-chr5-117133593-3	chr5	117133103	117134103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183306)	promoter-TSS (NM_183306)	15.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	128.14	145.61	152.62	128.2	138.09	155.13	142.59	137.51	85.56
Merged-chr1-191026265-3	chr1	191025769	191026769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198025)	promoter-TSS (NM_198025)	-79.0	NM_198025	226844.0	Mm.134053	NM_198025	ENSMUSG00000066595	Flvcr1	9630055N22Rik|FLVCR|Mfsd7b	feline leukemia virus subgroup C cellular receptor 1	protein-coding	118.99	96.3	112.84	93.11	71.84	112.53	111.96	85.34	83.06
Merged-chr13-83572150-3	chr13	83571644	83572644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347566, intron 1 of 10)	intron (NM_001347566, intron 1 of 10)	-1463.0	NM_001347577	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	58.35	27.19	9.25	42.51	16.79	9.65	15.84	11.05	5.62
Merged-chr8-27175219-3	chr8	27174734	27175734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080813)	promoter-TSS (NM_001080813)	-588.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	80.66	72.8	72.15	63.42	57.38	81.18	71.82	52.18	38.1
Merged-chr2-5895413-3	chr2	5894904	5895904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356411)	promoter-TSS (NM_001356411)	28.0	NM_021305	57743.0	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	70.93	54.83	39.77	70.17	48.98	42.6	69.71	63.67	36.85
Merged-chr15-103307352-3	chr15	103306837	103307837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030720)	TTS (NM_030720)	3101.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	22.88	29.95	20.35	19.57	13.53	26.53	31.69	30.07	18.11
Merged-chr3-146499744-3	chr3	146499207	146500207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	46.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	419.89	319.32	307.08	355.58	283.64	275.7	362.27	315.71	283.54
Merged-chr11-103383735-3	chr11	103383242	103384242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 5 of 11)	L2a|LINE|L2	-20050.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	188.21	115.66	130.42	190.27	109.63	139.06	136.25	135.3	87.43
Merged-chr11-117810744-4	chr11	117810252	117811252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009304, intron 1 of 3)	intron (NM_009304, intron 1 of 3)	1085.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	85.24	93.54	132.27	89.06	81.17	113.33	101.39	103.91	83.06
Merged-chr11-48817269-4	chr11	48816745	48817745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	146.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	276.3	189.84	234.01	259.77	160.95	196.12	219.69	240.54	154.88
Merged-chr9-119895456-3	chr9	119894932	119895932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026236, intron 1 of 18)	CpG	537.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	115.55	78.33	134.12	128.87	54.58	101.28	179.55	55.71	48.71
Merged-chr1-181881779-3	chr1	181881295	181882295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39394.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	9.15	4.15	11.1	5.4	0.47	0.0	3.17	4.42	1.87
Merged-chr4-105164237-3	chr4	105163738	105164738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	6891.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	102.4	92.62	37.0	70.85	39.65	42.6	64.43	61.02	49.96
Merged-chr12-69401206-3	chr12	69400690	69401690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29040.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	73.22	61.75	43.47	100.53	53.65	72.34	40.14	45.99	17.49
Merged-chr5-65724511-3	chr5	65724011	65725011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26655.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	149.31	123.95	96.2	165.98	118.03	155.93	166.88	141.94	84.94
Merged-chr19-23135044-3	chr19	23134540	23135540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6186.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	81.23	106.44	44.4	210.51	228.12	168.8	242.92	234.35	181.74
Merged-chr6-38876343-3	chr6	38875862	38876862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294144)	promoter-TSS (NM_001294144)	-172.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	165.32	84.78	104.52	155.86	84.9	127.0	121.46	53.06	70.57
Merged-chr19-5692782-3	chr19	5692292	5693292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3661.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	87.52	43.77	65.67	53.3	41.99	56.27	59.15	59.69	53.71
Merged-chr11-26452853-3	chr11	26452340	26453340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102382, intron 7 of 11)	intron (NR_102382, intron 7 of 11)	65756.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	43.48	55.75	25.9	44.53	57.85	53.05	44.36	54.39	48.09
Merged-chr3-121546158-3	chr3	121545666	121546666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13822.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	17.16	6.45	0.0	14.17	11.2	20.9	20.07	11.05	3.75
Merged-chr11-118457148-3	chr11	118456655	118457655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-2160.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	265.43	186.62	120.24	284.73	179.61	150.31	262.99	247.61	127.4
Merged-chr2-44962401-3	chr2	44961910	44962910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60767.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	50.34	50.69	37.92	51.95	38.25	39.39	36.97	34.49	21.86
Merged-chr8-113635373-3	chr8	113634865	113635865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173015)	promoter-TSS (NM_173015)	-221.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	263.14	375.08	262.69	198.37	263.11	229.08	301.01	350.2	187.36
Merged-chr1-190910459-3	chr1	190909967	190910967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	MIRb|SINE|MIR	1303.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	72.08	92.62	79.55	71.52	96.57	81.99	61.26	64.11	46.84
Merged-chr17-6317524-3	chr17	6317062	6318062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166629)	promoter-TSS (NM_001166629)	-88.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	38.33	39.63	12.95	16.19	18.19	20.9	36.97	47.75	32.48
Merged-chr4-9634329-3	chr4	9633833	9634833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	9384.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	99.54	80.18	27.75	126.17	85.84	72.34	86.61	195.88	53.71
Merged-chr16-91727522-3	chr16	91727000	91728000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	1302.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	241.41	216.57	146.14	238.85	194.07	195.32	199.62	262.21	107.42
Merged-chr8-22701553-3	chr8	22701045	22702045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	Lx8b|LINE|L1	5038.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	38.33	33.18	29.6	24.96	31.72	51.44	42.25	42.89	33.1
Merged-chr19-29805236-3	chr19	29804792	29805792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172836, exon 1 of 8)	exon (NM_172836, exon 1 of 8)	717.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	45.76	33.18	42.55	40.48	44.32	52.25	46.47	30.51	32.48
Merged-chr19-46962398-3	chr19	46961910	46962910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028353)	promoter-TSS (NR_028353)	-59.0	NR_028353	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	148.16	76.95	160.02	167.33	64.38	88.42	113.01	54.39	67.45
Merged-chr11-72690375-2	chr11	72689875	72690875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	intron (NM_009671, intron 1 of 24)	373.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	138.44	153.9	101.74	147.76	121.29	126.19	138.36	140.17	83.06
Merged-chr15-83130081-1	chr15	83129581	83130581	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 6 of 7)	Tigger1|DNA|TcMar-Tigger	-7280.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	108.12	127.18	95.27	159.23	106.36	102.08	143.64	183.06	69.95
Merged-chr19-44248321-3	chr19	44247822	44248822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	45034.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	77.23	61.28	26.82	126.17	41.05	51.44	65.48	40.68	12.49
Merged-chr4-133804636-3	chr4	133804122	133805122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51011.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	171.04	166.8	111.92	146.41	109.63	139.06	99.28	174.21	97.43
Merged-chr12-111430620-3	chr12	111430127	111431127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	-12034.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	227.11	205.51	210.89	305.65	200.6	184.87	237.64	263.97	144.89
Merged-chr2-119674960-3	chr2	119674466	119675466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030112)	promoter-TSS (NM_030112)	-102.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	223.67	169.57	147.07	192.29	176.34	160.76	213.35	165.37	118.66
Merged-chrX-140520390-3	chrX	140519892	140520892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22276.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	61.21	51.61	30.52	53.3	37.79	37.78	49.64	62.79	45.59
Merged-chr6-86772857-3	chr6	86772353	86773353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2261.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	170.47	138.24	51.8	288.1	245.38	108.51	122.52	121.15	43.09
Merged-chr13-23751511-3	chr13	23751006	23752006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	418.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	150.45	180.17	85.1	143.04	196.87	154.33	188.0	278.12	123.66
Merged-chr7-98805055-3	chr7	98804555	98805555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30057.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	73.79	38.25	24.05	88.39	51.78	39.39	59.15	37.14	17.49
Merged-chr5-124629026-3	chr5	124628527	124629527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-25.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	118.42	96.3	94.35	92.44	76.51	99.67	134.14	112.75	57.46
Merged-chr9-96399625-3	chr9	96399120	96400120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35189.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	129.28	124.87	89.72	109.3	86.77	102.88	96.11	136.19	73.07
Merged-chr14-70395270-3	chr14	70394790	70395790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 15 of 22)	intron (NM_021308, intron 15 of 22)	33804.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	98.97	110.59	48.1	95.14	67.18	91.63	72.88	61.02	65.58
Merged-chr2-50669477-3	chr2	50668978	50669978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-240206.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	42.9	52.53	20.35	24.29	18.66	37.78	15.84	15.92	11.24
Merged-chr2-45117307-3	chr2	45116818	45117818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355288, exon 1 of 11)	5' UTR (NM_001355288, exon 1 of 11)	124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	230.54	203.67	169.27	272.59	242.58	200.95	306.29	245.84	211.09
Merged-chr10-8757194-3	chr10	8756690	8757690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	128880.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	61.78	67.27	66.6	82.99	48.98	69.93	81.33	60.13	56.83
Merged-chr14-73381795-3	chr14	73381280	73382280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	3509.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	181.91	191.69	68.45	207.14	183.34	87.61	220.74	242.31	51.84
Merged-chr19-53038692-3	chr19	53038189	53039189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133216)	promoter-TSS (NM_133216)	-35.0	NM_133216	170750.0	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	225.96	199.06	125.79	174.08	208.06	185.68	165.82	162.72	93.68
Merged-chr16-70387581-1	chr16	70387081	70388081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	73632.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	9.15	5.53	12.95	4.72	3.27	3.22	14.79	5.75	5.0
Merged-chr14-14703159-2	chr14	14702657	14703657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360516, exon 1 of 25)	5' UTR (NM_001360516, exon 1 of 25)	132.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	102.97	87.55	111.92	76.92	75.57	67.52	87.66	46.43	56.83
Merged-chr14-48422200-1	chr14	48421700	48422700	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23923.0	NM_001310584	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.72	0.46	0.0	1.35	0.0	0.0	11.62	3.1	0.0
Merged-chr6-94221869-1	chr6	94221369	94222369	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	URR1B|DNA|hAT-Charlie	15573.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.58	4.61	0.0	53.98	22.39	12.86	3.17	4.42	6.25
Merged-chr19-47440217-3	chr19	47439722	47440722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	24189.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	100.68	43.77	65.67	129.55	59.25	53.05	135.19	125.58	50.59
Merged-chr15-25404014-3	chr15	25403518	25404518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	9746.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	48.62	36.86	20.35	48.58	23.79	33.76	28.52	26.97	15.61
Merged-chr8-11555965-3	chr8	11555471	11556471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011919)	promoter-TSS (NM_011919)	-92.0	NM_001302457	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	190.49	140.08	107.29	171.38	95.63	146.29	138.36	121.15	123.66
Merged-chr14-50930473-3	chr14	50930022	50931022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310507, intron 1 of 5)	CpG	327.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	348.95	304.12	271.01	286.75	296.7	270.07	271.44	303.33	174.87
Merged-chr18-61452001-3	chr18	61451523	61452523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32584.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	163.61	135.01	109.14	126.17	98.43	100.47	160.54	137.51	104.3
Merged-chr11-75531615-3	chr11	75531129	75532129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173388)	promoter-TSS (NM_173388)	-65.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	127.0	72.34	81.4	132.92	93.77	102.08	138.36	164.93	78.07
Merged-chr8-116943380-3	chr8	116942907	116943907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	14.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	140.73	94.46	118.39	103.23	86.3	74.75	82.38	56.6	46.22
Merged-chr14-31392980-3	chr14	31392481	31393481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	24696.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	429.61	396.27	218.29	422.37	369.94	252.39	349.6	391.32	160.5
Merged-chr3-116712224-3	chr3	116711731	116712731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362374)	promoter-TSS (NM_001362374)	49.0	NM_144902	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	113.27	99.53	74.0	119.43	111.5	98.87	100.34	70.3	54.33
Merged-chr13-8713601-1	chr13	8713101	8714101	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001289530, exon 7 of 10)	exon (NM_001289530, exon 7 of 10)	157443.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.0	2.76	3.7	4.05	3.73	4.82	3.17	4.86	3.75
Merged-chr6-122598161-3	chr6	122597662	122598662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	4282.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	205.94	206.43	144.29	194.32	146.95	113.33	201.73	257.78	127.4
Merged-chr17-5770448-3	chr17	5769921	5770921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28236.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	85.24	72.8	73.07	78.94	69.51	78.77	92.94	97.72	43.09
Merged-chr10-19591889-3	chr10	19591399	19592399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-50.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	284.88	275.55	231.24	258.42	239.32	239.53	229.19	239.65	158.63
Merged-chr9-45266352-3	chr9	45265881	45266881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106054)	TTS (NR_106054)	326.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	156.74	139.16	95.27	197.69	166.54	209.79	188.0	195.0	111.79
Merged-chr18-60792180-3	chr18	60791718	60792718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11631.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	22.31	17.97	16.65	14.17	10.73	3.22	24.29	13.27	6.25
Merged-chr6-37723552-3	chr6	37723067	37724067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147244.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	26.31	28.11	20.35	15.52	23.33	8.84	108.79	94.18	32.48
Merged-chr1-93754883-3	chr1	93754389	93755389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025920)	promoter-TSS (NM_025920)	-51.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	120.7	85.25	86.02	93.79	73.71	113.33	99.28	48.2	43.09
Merged-chr5-137531087-3	chr5	137530583	137531583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010312, intron 1 of 9)	CpG	-1489.0	NR_105846	102465227.0		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	70.36	42.39	55.5	47.23	26.12	48.23	38.02	33.16	20.61
Merged-chr2-165992638-3	chr2	165992158	165993158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008679)	promoter-TSS (NM_008679)	21.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	137.29	111.51	135.04	148.44	77.91	122.98	171.1	95.95	84.31
Merged-chr16-91030930-3	chr16	91030421	91031421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 7 of 17)	intron (NR_152264, intron 7 of 17)	13458.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	86.95	52.53	24.05	83.66	58.31	34.56	49.64	38.03	23.73
Merged-chr1-53352740-3	chr1	53352246	53353246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353501)	promoter-TSS (NM_001353501)	6.0	NM_001290984	70396.0	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	29.75	22.58	28.67	26.31	25.66	47.42	30.63	22.11	31.23
Merged-chr4-88439873-3	chr4	88439383	88440383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	-957.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	65.79	49.76	30.52	76.24	58.31	51.44	77.1	61.02	29.98
Merged-chr18-67873676-1	chr18	67873176	67874176	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 41 of 45)	ORR1E|LTR|ERVL-MaLR	-59497.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	2.86	0.92	12.02	3.37	2.8	4.82	29.57	35.37	32.48
Merged-chr7-127745469-3	chr7	127744944	127745944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1331.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	26.89	23.04	29.6	36.43	21.93	49.03	21.12	41.12	20.61
Merged-chr18-53261457-3	chr18	53260960	53261960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	15798.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	120.13	108.28	90.65	144.39	118.49	73.95	151.03	153.87	53.08
Merged-chr1-180922527-3	chr1	180922028	180923028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12494.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	19.45	17.05	5.55	14.84	8.86	16.08	14.79	5.75	5.0
Merged-chr1-135691177-3	chr1	135690639	135691639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28924.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	42.33	38.71	17.57	51.95	30.32	38.58	15.84	1.33	6.25
Merged-chr4-139131097-3	chr4	139130586	139131586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033745)	promoter-TSS (NR_033745)	27.0	NM_001163006	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	229.97	173.25	129.49	192.97	163.74	91.63	202.79	144.15	73.07
Merged-chr8-70797478-2	chr8	70796990	70797990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-645.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	21.17	7.37	7.4	20.92	8.4	9.65	20.07	14.59	10.62
Merged-chr6-110040541-3	chr6	110040058	110041058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-604954.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	3.43	10.14	20.35	18.22	12.13	17.68	9.51	7.52	23.73
Merged-chr16-93603924-4	chr16	93603427	93604427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145482)	promoter-TSS (NM_145482)	-112.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	235.69	242.37	140.59	244.25	261.71	192.91	210.18	221.08	149.26
Merged-chr16-21595888-3	chr16	21595391	21596391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	98774.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	42.9	35.02	29.6	93.11	92.84	80.38	50.7	41.56	26.23
Merged-chr2-167932784-2	chr2	167932293	167933293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	466.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	266.58	188.46	211.81	224.68	168.88	199.34	212.29	215.34	146.76
Merged-chr17-84626493-3	chr17	84625976	84626976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172256)	promoter-TSS (NM_172256)	-23.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	4.58	7.83	1.85	8.1	2.8	0.0	4.22	2.21	7.49
Merged-chr2-164866961-3	chr2	164866467	164867467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9259.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	164.18	122.11	154.47	216.58	97.03	151.92	207.01	191.9	101.17
Merged-chr11-23633700-3	chr11	23633195	23634195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347242)	promoter-TSS (NM_001347242)	-64.0	NM_027860	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	74.37	37.32	44.4	76.24	47.12	49.03	54.92	31.39	28.73
Merged-chr11-3161344-2	chr11	3160852	3161852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	32111.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	72.08	79.25	123.94	95.81	111.96	122.98	9.51	3.54	162.38
Merged-chr11-70453436-4	chr11	70452953	70453953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151497)	TTS (NR_151497)	1522.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	158.46	114.27	104.52	149.11	88.64	117.35	135.19	107.89	85.56
Merged-chr8-75109474-3	chr8	75108959	75109959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-50.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	36.61	33.18	39.77	14.84	20.99	32.96	42.25	35.82	14.36
Merged-chr19-55658759-3	chr19	55658251	55659251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	43453.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	168.18	125.79	50.87	203.76	125.96	116.55	95.06	101.7	71.82
Merged-chr7-120842816-3	chr7	120842324	120843324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007908)	promoter-TSS (NM_007908)	-7.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	50.91	47.0	35.15	63.42	54.58	48.23	51.75	47.31	13.74
Merged-chr7-30552387-3	chr7	30551878	30552878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-106.0	NM_183321	333193.0	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	59.49	79.72	52.72	48.58	57.85	52.25	117.24	133.09	123.03
Merged-chr2-174437444-1	chr2	174436944	174437944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1595.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	346.09	311.95	200.71	249.65	185.2	172.01	207.01	272.37	103.67
Merged-chr7-19267230-3	chr7	19266744	19267744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	PB1D10|SINE|Alu	4610.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	191.64	123.49	133.19	141.02	88.64	139.86	177.44	157.41	134.9
Merged-chr12-44269148-3	chr12	44268647	44269647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	-7.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	434.19	414.24	384.78	391.34	391.87	317.5	403.46	360.37	292.28
Merged-chr17-71264947-3	chr17	71264422	71265422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	46089.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	196.21	230.39	170.19	241.55	229.52	221.85	41.19	43.77	31.23
Merged-chr13-111979559-1	chr13	111979059	111980059	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111623.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	33.75	26.73	18.5	80.97	85.37	81.99	26.4	16.8	6.25
Merged-chr5-139726573-5	chr5	139726056	139727056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	9777.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	215.09	143.3	142.44	251.67	130.16	134.23	248.2	222.41	102.42
Merged-chr6-29247314-3	chr6	29246807	29247807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25181.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	53.77	34.56	34.22	61.4	37.79	32.96	42.25	22.55	13.12
Merged-chr3-61605702-3	chr3	61605216	61606216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241209.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	13.16	13.82	5.55	17.54	17.73	28.13	8.45	4.86	6.87
Merged-chr11-60836667-2	chr11	60836165	60837165	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1-int|LTR|ERVL-MaLR	6034.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	4.0	2.76	3.7	118.75	96.57	95.65	133.08	217.55	83.06
Merged-chr9-58582187-3	chr9	58581714	58582714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-26.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	132.72	124.87	98.05	136.29	100.77	122.98	118.29	104.35	74.94
Merged-chr13-24105499-3	chr13	24104981	24105981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 17 of 37)	MTEa|LTR|ERVL-MaLR	-114267.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	30.32	20.27	12.95	46.56	18.19	44.21	36.97	15.48	28.1
Merged-chr1-60973795-1	chr1	60973295	60974295	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4119.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	40.62	31.33	32.37	70.17	36.39	60.28	50.7	35.82	37.47
Merged-chr14-32931882-3	chr14	32931373	32932373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59509.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	45.76	27.19	31.45	59.38	35.92	28.94	26.4	28.74	15.61
Merged-chr2-122369177-3	chr2	122368673	122369673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013829)	promoter-TSS (NM_001013829)	-255.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	48.62	26.73	35.15	49.93	25.19	23.31	45.42	27.86	28.1
Merged-chr11-116389392-1	chr11	116388892	116389892	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	23640.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	5.72	0.0	0.0	1.35	0.93	4.82	74.99	55.27	56.83
Merged-chr7-45635407-3	chr7	45634916	45635916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152217)	TTS (NR_152217)	3342.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	69.79	44.24	20.35	43.18	31.26	42.6	44.36	37.58	31.23
Merged-chr5-21564166-3	chr5	21563680	21564680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	20653.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	65.79	52.07	41.62	59.38	41.05	26.53	63.37	79.15	49.34
Merged-chr13-48872476-3	chr13	48871951	48872951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1566.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	22.31	19.81	12.95	10.12	10.73	17.68	22.18	11.94	5.0
Merged-chr14-20707487-3	chr14	20706988	20707988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252081)	promoter-TSS (NM_001252081)	-64.0	NM_001252081	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	232.25	218.87	183.14	254.37	203.86	192.11	223.91	185.27	103.05
Merged-chr17-10824763-3	chr17	10824256	10825256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	15435.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	10.87	24.42	7.4	20.92	15.39	6.43	9.51	9.29	5.0
Merged-chr17-56626920-3	chr17	56626408	56627408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	-5.0	NM_028782	74142.0	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	114.98	80.64	62.9	104.58	83.97	81.99	91.89	47.75	26.23
Merged-chr18-46474912-3	chr18	46474409	46475409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9093.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	62.93	71.42	48.1	101.88	80.71	108.51	71.82	42.01	44.97
Merged-chr10-78367178-3	chr10	78366649	78367649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-15449.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	61.21	56.68	18.5	37.78	53.65	45.82	40.14	40.24	24.36
Merged-chr2-49452103-3	chr2	49451601	49452601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	CpG	615.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	264.29	231.31	163.72	213.89	213.19	155.13	258.77	191.02	85.56
Merged-chr2-15049317-3	chr2	15048815	15049815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165942)	promoter-TSS (NM_001165942)	-3.0	NM_001355685	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	82.38	105.98	61.05	81.64	88.64	75.56	101.39	114.08	59.33
Merged-chr1-185363732-3	chr1	185363226	185364226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	682.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	391.86	344.21	175.74	365.7	297.17	206.57	294.68	282.54	139.89
Merged-chr13-37462299-3	chr13	37461823	37462823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116978.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	53.2	50.69	53.65	60.05	41.99	45.01	48.58	42.01	38.72
Merged-chr9-65536273-3	chr9	65535775	65536775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43812.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	275.16	235.46	220.14	245.6	194.07	239.53	213.35	283.43	151.14
Merged-chr17-20945665-1	chr17	20945165	20946165	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016891, intron 1 of 14)	CpG	211.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	154.45	150.68	134.12	173.4	174.47	144.68	195.39	164.93	116.79
Merged-chr10-83646524-3	chr10	83646036	83647036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 1 of 20)	Lx8|LINE|L1	2128.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	57.21	60.82	32.37	66.12	57.38	58.68	33.8	34.05	34.35
Merged-chr2-5714482-3	chr2	5713994	5714994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177343, exon 1 of 11)	5' UTR (NM_177343, exon 1 of 11)	268.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	171.04	129.02	140.59	193.64	135.75	185.68	154.2	138.84	75.57
Merged-chr12-111425499-3	chr12	111425009	111426009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028807, exon 6 of 13)	exon (NM_028807, exon 6 of 13)	8064.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	9.72	1.84	3.7	8.1	1.87	3.22	8.45	4.86	1.25
Merged-chr3-90266452-3	chr3	90265968	90266968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	-46.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	603.52	540.04	352.41	505.36	467.44	310.26	483.73	592.06	266.05
Merged-chr1-87621555-3	chr1	87620977	87621977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1165.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	285.45	257.12	161.87	225.36	174.94	179.24	212.29	272.37	155.51
Merged-chr19-5944366-3	chr19	5943837	5944837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	-19521.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	46.91	28.11	18.5	51.95	29.39	33.76	10.56	12.82	1.87
Merged-chr10-78135212-3	chr10	78134689	78135689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34579.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	85.24	51.61	36.07	68.82	35.45	28.94	49.64	51.29	41.22
Merged-chr17-64602168-6	chr17	64601673	64602673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	CpG-6542	524.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	229.97	239.15	144.29	273.94	306.03	227.47	212.29	263.09	118.66
Merged-chr3-8983898-3	chr3	8983354	8984354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19708.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	334.08	258.04	180.37	333.99	236.99	219.43	285.17	349.75	162.38
Merged-chrX-160502209-3	chrX	160501691	160502691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358968)	promoter-TSS (NM_001358968)	29.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	110.98	112.89	61.97	101.21	121.29	90.83	127.8	121.6	63.7
Merged-chr4-41348025-3	chr4	41347530	41348530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-966.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	162.46	151.14	86.02	94.46	81.17	86.81	163.71	143.7	109.29
Merged-chr1-171226456-3	chr1	171225960	171226960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131173)	TTS (NR_131173)	1406.0	NM_013474	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	50.91	48.38	54.57	62.07	51.32	58.68	86.61	82.69	52.46
Merged-chr8-108691995-3	chr8	108691491	108692491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22653.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	80.66	49.76	27.75	85.01	30.32	65.11	90.83	95.95	51.84
Merged-chr10-127666962-3	chr10	127666478	127667478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045171)	promoter-TSS (NR_045171)	-145.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	191.64	156.21	149.84	163.96	148.35	157.54	195.39	210.91	131.15
Merged-chr1-52844901-3	chr1	52844394	52845394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-144.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	69.79	64.05	56.42	66.8	65.78	78.77	70.76	81.36	56.21
Merged-chr10-99302258-3	chr10	99301737	99302737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39006.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	39.47	51.61	20.35	61.4	39.65	33.76	46.47	38.91	23.73
Merged-chr10-100840221-3	chr10	100839712	100840712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98577.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	65.21	63.13	26.82	72.87	46.18	34.56	108.79	91.97	28.73
Merged-chr2-25588767-3	chr2	25588263	25589263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-8664.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	87.52	91.24	69.37	101.21	127.36	115.75	91.89	103.91	65.58
Merged-chr11-120350354-3	chr11	120349845	120350845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038126, intron 1 of 1)	CpG	1667.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	328.93	250.67	244.19	274.61	253.78	254.8	275.66	267.95	147.39
Merged-chr16-4879857-3	chr16	4879363	4880363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145359)	promoter-TSS (NM_145359)	-12.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	342.09	339.14	341.31	307.67	320.96	287.76	312.63	389.99	220.46
Merged-chr19-5663708-3	chr19	5663153	5664153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164482)	promoter-TSS (NM_001164482)	54.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	50.91	39.17	51.8	45.21	21.46	48.23	64.43	49.96	56.21
Merged-chr4-40156296-3	chr4	40155812	40156812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	13047.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	29.75	49.3	41.62	23.62	27.99	28.13	48.58	30.07	42.47
Merged-chr12-104175837-2	chr12	104175342	104176342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21970.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	21.17	19.81	19.42	17.54	11.66	2.41	54.92	57.04	24.36
Merged-chr11-102296351-3	chr11	102295850	102296850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098836, intron 1 of 12)	CpG	279.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	172.19	118.42	164.64	153.84	87.7	130.21	175.33	97.72	99.3
Merged-chr13-83079417-3	chr13	83078906	83079906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-381073.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	16.02	15.21	7.4	21.59	17.73	11.25	21.12	18.13	19.98
Merged-chr17-34187588-4	chr17	34187081	34188081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	25.0	NM_013683	21354.0	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	238.55	265.87	222.91	145.06	166.08	184.87	235.53	318.8	161.13
Merged-chr2-170324266-3	chr2	170323826	170324826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32035.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	157.89	126.25	137.82	159.23	140.42	130.21	117.24	171.12	116.79
Merged-chr4-125118136-3	chr4	125117640	125118640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153159)	TTS (NM_153159)	9741.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	116.13	101.83	93.42	97.16	89.1	91.63	76.05	85.78	56.21
Merged-chr17-80128081-3	chr17	80127581	80128581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	610.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	208.8	229.47	94.35	391.34	392.8	219.43	194.34	242.31	90.56
Merged-chr7-100443888-3	chr7	100443338	100444338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 27 of 32)	intron (NM_001017985, intron 27 of 32)	-29153.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	106.97	86.63	57.35	85.69	69.98	70.73	65.48	77.38	60.58
Merged-chr10-96496916-1	chr10	96496416	96497416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120085.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.0	7.37	3.7	3.37	9.8	1.61	7.39	1.77	6.25
Merged-chr2-32548137-3	chr2	32547638	32548638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12779.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	41.19	44.7	36.07	51.95	40.59	44.21	35.91	24.32	16.24
Merged-chr5-34514012-3	chr5	34513501	34514501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139064)	promoter-TSS (NM_139064)	-22.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	221.96	226.25	150.77	257.07	246.32	172.81	253.48	239.21	101.8
Merged-chr4-139156664-3	chr4	139156188	139157188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23967.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	49.77	45.62	25.9	76.92	65.31	38.58	40.14	27.41	22.48
Merged-chr11-106778642-1	chr11	106778142	106779142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_148431, intron 1 of 7)	intron (NR_148431, intron 1 of 7)	824.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	81.23	94.46	67.52	78.27	118.96	78.77	81.33	97.28	62.45
Merged-chr8-36812580-3	chr8	36812068	36813068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-79514.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	46.91	58.06	35.15	54.65	47.12	53.05	39.08	42.45	14.36
Merged-chr7-130648286-3	chr7	130647784	130648784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-44272.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	129.86	91.24	37.0	70.17	51.32	34.56	60.2	44.22	21.23
Merged-chr5-124478375-3	chr5	124477842	124478842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-107.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	383.85	304.58	197.94	342.76	276.64	220.24	294.68	361.69	207.34
Merged-chr10-13501138-3	chr10	13500641	13501641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330198, exon 1 of 8)	5' UTR (NM_001330198, exon 1 of 8)	113.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	288.32	292.14	170.19	309.7	329.82	214.61	298.9	303.33	141.77
Merged-chr16-85133679-3	chr16	85133206	85134206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	40001.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	138.44	107.36	108.22	113.35	119.89	138.25	128.85	157.85	80.56
Merged-chr11-20133129-3	chr11	20132640	20133640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20189.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	21.74	23.96	14.8	24.96	16.79	28.94	12.67	24.32	14.99
Merged-chr16-77013653-3	chr16	77013174	77014174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013918)	promoter-TSS (NM_013918)	-395.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	225.39	103.22	146.14	151.81	66.24	95.65	155.26	63.23	82.44
Merged-chr1-165771782-3	chr1	165771282	165772282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 4 of 4)	MIR|SINE|MIR	8024.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	52.63	29.49	28.67	41.83	18.19	61.89	53.87	34.05	33.72
Merged-chr4-135406394-3	chr4	135405909	135406909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8182.0	NM_145555	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	34.32	25.8	11.1	41.16	32.66	32.96	27.46	35.82	8.12
Merged-chr10-91082064-3	chr10	91081554	91082554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027078)	promoter-TSS (NM_027078)	689.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	195.07	197.22	180.37	182.85	222.52	182.46	222.86	213.57	123.03
Merged-chr4-134102587-3	chr4	134102082	134103082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045571)	promoter-TSS (NR_045571)	-1.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	15.45	16.59	9.25	17.54	10.26	9.65	16.9	19.01	12.49
Merged-chr1-151608019-2	chr1	151607515	151608515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	36642.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	45.19	42.39	22.2	21.59	15.86	28.94	10.56	12.82	5.62
Merged-chr6-87010038-4	chr6	87009557	87010557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020045, intron 1 of 7)	CpG	221.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	188.21	147.45	147.07	205.79	139.02	188.89	142.59	171.56	88.68
Merged-chr4-116651531-3	chr4	116650961	116651961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021473, exon 1 of 9)	5' UTR (NM_021473, exon 1 of 9)	213.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	262.0	327.62	225.69	265.16	299.5	266.86	285.17	352.85	158.63
Merged-chr10-60286785-3	chr10	60286294	60287294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2333.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	65.79	51.15	38.85	54.65	53.18	46.62	92.94	104.79	46.22
Merged-chr14-25484239-3	chr14	25483738	25484738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	25053.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	154.45	75.11	44.4	165.31	75.11	70.73	89.78	95.95	39.97
Merged-chr19-40684267-3	chr19	40683764	40684764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	24494.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	137.29	159.43	104.52	174.08	139.49	121.37	140.47	176.87	95.55
Merged-chr16-91891220-1	chr16	91890720	91891720	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 30 of 38)	intron (NM_010587, intron 30 of 38)	40410.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	1.72	1.38	0.92	2.7	0.93	10.45	10.56	9.73	5.0
Merged-chr8-111940637-3	chr8	111940159	111941159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-44.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	148.73	171.87	98.97	138.32	156.75	90.83	145.75	152.99	100.55
Merged-chr15-81361000-5	chr15	81360507	81361507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011399)	promoter-TSS (NM_011399)	-242.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	157.89	153.9	132.27	148.44	99.37	102.08	107.73	117.17	106.17
Merged-chr19-36409669-3	chr19	36409171	36410171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	CpG	30604.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	49.77	25.8	25.9	60.05	27.06	34.56	44.36	21.22	17.49
Merged-chr3-87859980-3	chr3	87859493	87860493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033573, intron 6 of 6)	intron (NM_033573, intron 6 of 6)	13238.0	NM_021309	27371.0	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	10.3	10.14	12.95	10.8	7.46	11.25	9.51	9.73	7.49
Merged-chr3-115689606-3	chr3	115689109	115690109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25446.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	48.05	51.61	27.75	100.53	104.5	86.01	61.26	60.13	29.98
Merged-chr10-44360750-1	chr10	44360250	44361250	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035450)	TTS (NR_035450)	1074.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	20.59	17.97	31.45	10.8	16.33	32.15	26.4	19.01	11.24
Merged-chr15-98867514-3	chr15	98867021	98868021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	3684.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	23.45	20.27	19.42	16.19	11.2	16.88	21.12	16.36	16.86
Merged-chr19-4855181-3	chr19	4854684	4855684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019861)	promoter-TSS (NM_019861)	55.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	30.89	30.41	37.0	41.83	35.45	60.28	48.58	39.35	28.1
Merged-chr3-127490177-1	chr3	127489677	127490677	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	URR1B|DNA|hAT-Charlie	8938.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.86	1.84	1.85	0.67	2.8	2.41	148.92	151.66	39.97
Merged-chr10-78105659-3	chr10	78105164	78106164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	36296.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	61.21	60.82	63.82	55.33	55.98	59.48	80.27	102.14	49.96
Merged-chr15-78406674-3	chr15	78406221	78407221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	9.0	NM_001162493	246221.0	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	73.22	76.95	90.65	58.7	61.11	82.79	127.8	78.26	74.32
Merged-chrX-101274089-3	chrX	101273595	101274595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021521)	promoter-TSS (NM_021521)	4.0	NM_021521	59024.0	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	50.91	47.0	18.5	42.51	29.86	37.78	40.14	39.35	24.98
Merged-chr6-82753220-3	chr6	82752710	82753710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21244.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	91.53	71.88	44.4	124.82	96.1	56.27	130.97	109.22	59.95
Merged-chr8-71676622-3	chr8	71676124	71677124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190830, intron 1 of 23)	CpG	241.0	NM_010589	16453.0	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	104.11	100.45	79.55	53.3	48.52	62.7	97.17	108.33	86.18
Merged-chr4-130914162-3	chr4	130913672	130914672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	L3b|LINE|CR1	838.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	414.17	425.3	295.99	439.92	360.14	325.53	399.24	482.85	219.83
Merged-chr14-45664991-3	chr14	45664482	45665482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6839.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	172.19	180.63	86.95	207.81	102.63	159.95	274.61	313.5	145.51
Merged-chr11-77763274-3	chr11	77762803	77763803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13932.0	NM_001291213	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	6.86	6.91	3.7	33.74	11.2	10.45	20.07	2.21	3.12
Merged-chr2-158767900-3	chr2	158767395	158768395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027975)	promoter-TSS (NM_027975)	-204.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	13.73	6.91	9.25	12.14	6.53	4.82	11.62	11.05	9.99
Merged-chr13-20787145-3	chr13	20786625	20787625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6988.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	128.71	130.4	71.22	151.14	118.03	72.34	170.05	171.56	84.94
Merged-chr7-92669106-4	chr7	92668563	92669563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	849.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	229.97	290.75	225.69	228.73	344.75	245.16	246.09	270.61	177.37
Merged-chr13-91728073-3	chr13	91727578	91728578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028314, intron 1 of 1)	L1MC4a|LINE|L1	-13443.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	1.72	2.76	3.7	9.45	6.53	6.43	5.28	6.63	1.25
Merged-chr4-154928201-3	chr4	154927747	154928747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-170.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	263.72	266.79	160.94	227.38	201.07	144.68	247.15	310.84	163.63
Merged-chr8-80952444-3	chr8	80951886	80952886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62520.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	85.81	71.88	74.0	118.75	69.04	76.36	95.06	85.34	68.07
Merged-chr2-25500704-3	chr2	25500197	25501197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	-53.0	NM_001356407	30839.0	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	181.34	166.8	105.44	174.08	161.88	141.47	130.97	129.11	91.18
Merged-chr3-54735022-3	chr3	54734512	54735512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025442)	promoter-TSS (NM_025442)	352.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	129.86	116.12	113.77	111.33	93.77	130.21	109.84	87.11	92.43
Merged-chr10-117710767-3	chr10	117710261	117711261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001288586)	promoter-TSS (NM_001288586)	-3.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	238.55	206.89	205.34	201.07	217.86	192.11	219.69	183.94	151.76
Merged-chr11-21031995-3	chr11	21031499	21032499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59325.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	29.17	46.08	24.97	30.36	27.52	41.8	40.14	65.44	39.35
Merged-chr18-10706813-3	chr18	10706317	10707317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	-43.0	NR_045379	75370.0	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	22.88	17.51	16.65	28.34	30.32	38.58	29.57	22.55	13.74
Merged-chr11-3167618-2	chr11	3167201	3168201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	25762.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	66.36	111.51	123.02	84.34	121.76	146.29	11.62	8.84	168.0
Merged-chr8-122474024-3	chr8	122473519	122474519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033142, intron 1 of 5)	intron (NM_001033142, intron 1 of 5)	2045.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	103.54	103.68	91.57	85.69	75.57	98.87	95.06	84.9	61.83
Merged-chr6-34872038-3	chr6	34871551	34872551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347101, exon 4 of 4)	3' UTR (NM_001347101, exon 4 of 4)	6014.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	52.06	41.01	34.22	70.85	47.12	52.25	48.58	30.07	24.36
Merged-chr10-93453359-3	chr10	93452849	93453849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313897)	promoter-TSS (NM_001313897)	-47.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	61.78	61.28	70.3	71.52	55.98	65.91	102.45	96.39	59.33
Merged-chr16-36987685-3	chr16	36987185	36988185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	2782.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	20.59	11.98	9.25	10.12	13.06	17.68	19.01	12.82	3.75
Merged-chr5-135009850-4	chr5	135009364	135010364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033794, exon 1 of 5)	non-coding (NR_033794, exon 1 of 5)	408.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	229.97	267.72	221.99	242.9	216.46	201.75	344.32	396.18	161.75
Merged-chr7-142399503-3	chr7	142399001	142400001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11631.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	201.93	184.77	215.51	109.98	92.84	128.61	203.84	214.45	138.65
Merged-chr17-43580725-3	chr17	43580218	43581218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10791.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	74.37	102.29	58.27	143.71	78.37	93.24	127.8	117.62	76.82
Merged-chr7-80014020-3	chr7	80013497	80014497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10817.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	36.61	42.85	39.77	37.11	27.06	36.97	29.57	45.99	26.85
Merged-chr2-168230555-3	chr2	168230108	168231108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	-14.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	484.53	426.23	303.38	396.06	364.34	292.58	373.89	362.58	217.34
Merged-chr12-110974913-1	chr12	110974413	110975413	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3705.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	9.72	8.29	16.65	9.45	7.0	8.04	3.17	10.17	6.87
Merged-chr2-129545668-3	chr2	129545163	129546163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9061.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	156.74	94.92	100.82	105.26	61.58	76.36	77.1	86.66	57.46
Merged-chr8-34965274-1	chr8	34964774	34965774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_175091, exon 1 of 27)	exon (NM_175091, exon 1 of 27)	416.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	157.31	113.81	98.05	122.12	95.17	118.96	136.25	72.52	98.68
Merged-chr11-86577402-3	chr11	86576899	86577899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6759.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	233.97	199.52	135.04	266.51	190.34	176.83	208.07	238.33	126.15
Merged-chr10-118804821-3	chr10	118804329	118805329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64074.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	127.0	74.65	76.77	165.31	87.7	82.79	101.39	79.15	46.84
Merged-chrX-74254692-3	chrX	74254185	74255185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007927)	promoter-TSS (NM_007927)	-2.0	NM_007927	13726.0	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	148.73	125.33	90.65	149.11	124.56	91.63	116.18	127.79	86.18
Merged-chr14-66296984-3	chr14	66296505	66297505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029979)	promoter-TSS (NM_029979)	-20.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	50.34	37.78	29.6	49.93	37.32	40.19	62.31	27.86	28.1
Merged-chr8-95255011-3	chr8	95254475	95255475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195413, intron 25 of 32)	intron (NM_001195413, intron 25 of 32)	51610.0	NM_145601	333329.0	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	4.58	2.76	3.7	0.67	2.33	3.22	0.0	0.88	5.0
Merged-chr8-46890471-3	chr8	46889965	46890965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96422.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	181.91	194.91	112.84	185.55	151.62	132.63	171.1	216.66	148.01
Merged-chr2-37423038-3	chr2	37422487	37423487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290642)	promoter-TSS (NM_001290642)	-84.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	133.86	94.0	119.32	106.61	79.77	144.68	139.42	100.37	114.91
Merged-chr5-117159598-3	chr5	117159083	117160083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	ID_B1|SINE|B4	25995.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	229.39	264.03	225.69	229.4	211.33	193.71	234.47	250.27	121.78
Merged-chr1-37541141-3	chr1	37540645	37541645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	-129.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	66.93	37.32	44.4	48.58	22.39	30.54	55.98	28.74	25.61
Merged-chr11-83717256-3	chr11	83716771	83717771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8267.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	112.12	64.97	55.5	51.28	32.66	32.96	33.8	19.01	12.49
Merged-chr10-127596183-3	chr10	127595729	127596729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24919.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	488.53	413.78	271.94	542.47	429.19	381.8	412.97	518.22	237.95
Merged-chr4-32249161-3	chr4	32248664	32249664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168271.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	105.83	79.25	48.1	138.32	69.98	53.05	101.39	97.28	49.96
Merged-chr17-80933790-3	chr17	80933297	80934297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131127)	TTS (NR_131127)	-10835.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	25.74	15.21	10.17	37.78	29.86	21.7	36.97	31.84	7.49
Merged-chr1-138614693-3	chr1	138614192	138615192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	intron (NM_021605, intron 1 of 9)	5065.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	59.49	76.49	36.07	76.92	57.38	57.07	62.31	49.08	49.34
Merged-chr1-78488799-3	chr1	78488312	78489312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	85.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	100.11	132.25	87.87	116.05	124.09	125.39	153.15	153.87	53.71
Merged-chr9-109059239-3	chr9	109058729	109059729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012236)	promoter-TSS (NM_001012236)	22.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	272.87	193.53	156.32	234.8	144.62	158.35	236.59	251.59	144.89
Merged-chr15-53400525-3	chr15	53400018	53401018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-54335.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	140.15	116.12	89.72	155.86	156.75	141.47	184.83	210.03	93.68
Merged-chr6-83775854-3	chr6	83775369	83776369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009357)	promoter-TSS (NM_009357)	-57.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	55.49	62.67	53.65	67.47	55.51	74.75	68.65	55.27	35.6
Merged-chr8-35708024-3	chr8	35707521	35708521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118538.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	9.15	5.53	4.62	7.42	5.6	11.25	23.24	10.17	7.49
Merged-chr13-98955388-3	chr13	98954891	98955891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45R|DNA|hAT-Tip100	-29007.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	62.93	41.01	40.7	70.17	40.59	46.62	109.84	100.81	62.45
Merged-chr2-36136752-3	chr2	36136263	36137263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	-59.0	NR_027515	67889.0	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	196.79	237.3	177.59	208.49	242.58	219.43	321.08	304.65	153.01
Merged-chr7-46845803-3	chr7	46845311	46846311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	7.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	168.76	179.71	170.19	159.91	186.6	201.75	211.24	229.48	160.5
Merged-chr16-93031796-3	chr16	93031275	93032275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205701.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	231.68	231.77	121.17	177.45	144.62	114.14	126.74	154.32	87.43
Merged-chr14-62858522-3	chr14	62858018	62859018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-7024.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	77.8	71.88	43.47	67.47	37.32	59.48	55.98	51.29	46.22
Merged-chr15-98145660-3	chr15	98145156	98146156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170710)	promoter-TSS (NM_001170710)	46.0	NM_030121	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	86.38	76.03	92.5	85.01	85.37	99.67	127.8	103.02	66.2
Merged-chr7-25077106-3	chr7	25076609	25077609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168506, exon 2 of 3)	5' UTR (NM_001168506, exon 2 of 3)	302.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	195.07	197.68	150.77	130.9	138.55	163.97	147.87	124.25	126.78
Merged-chr2-25428581-3	chr2	25428066	25429066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007379)	promoter-TSS (NM_007379)	-108.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	21.74	7.37	19.42	27.66	10.26	6.43	19.01	6.63	6.87
Merged-chr15-36933799-3	chr15	36933264	36934264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73638.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	17.73	19.35	31.45	24.29	19.13	33.76	33.8	26.97	15.61
Merged-chr12-40551501-3	chr12	40551009	40552009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	105456.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	25.17	21.2	25.9	39.81	22.86	14.47	20.07	20.78	18.74
Merged-chrM-5812-2	chrM	5325	6325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											247.7	172.79	12.95	142.37	30.79	39.39	91.89	39.35	23.11
Merged-chr15-97964656-2	chr15	97964154	97965154	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201359, intron 1 of 7)	intron (NM_201359, intron 1 of 7)	425.0	NM_001252153	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	91.53	66.81	63.82	136.97	98.9	144.68	101.39	94.18	66.82
Merged-chr7-19683894-3	chr7	19683393	19684393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-2433.0	NM_001309799	105886299.0	Mm.28394	NM_001309799	ENSMUSG00000109350	Gm44805	Apoc4-apoc2	predicted gene 44805	protein-coding	79.52	70.5	72.15	132.24	88.64	91.63	100.34	117.17	53.08
Merged-chr1-179842766-3	chr1	179842255	179843255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38740.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	8.01	5.07	4.62	8.77	3.73	6.43	5.28	1.77	2.5
Merged-chr17-34649880-1	chr17	34649380	34650380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_017406, intron 5 of 17)	(TG)n|Simple_repeat|Simple_repeat	2734.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	61.21	42.85	49.95	14.84	6.53	14.47	15.84	17.69	6.87
Merged-chr11-69995621-3	chr11	69995122	69996122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-144.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	113.84	95.84	138.74	87.71	52.72	62.7	91.89	118.94	81.19
Merged-chr7-17058507-3	chr7	17058004	17059004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	-1825.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	37.76	47.0	49.02	37.11	36.85	65.11	78.16	68.98	56.83
Merged-chr6-108185472-3	chr6	108184962	108185962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145937, exon 1 of 9)	exon (NM_145937, exon 1 of 9)	121.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	104.69	95.84	64.75	118.75	123.62	73.14	152.09	118.94	31.23
Merged-chr4-137909632-3	chr4	137909123	137910123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 2 of 19)	intron (NM_199307, intron 2 of 19)	47386.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	9.72	11.52	3.7	10.8	4.67	6.43	16.9	16.8	11.24
Merged-chr1-67038835-3	chr1	67038309	67039309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021295)	promoter-TSS (NM_021295)	25.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	15.45	10.6	7.4	24.96	20.53	19.29	29.57	15.48	3.75
Merged-chr2-112265631-3	chr2	112265142	112266142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	-672.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	159.6	116.12	161.87	118.08	118.03	106.1	140.47	142.82	78.07
Merged-chr19-21036685-3	chr19	21036192	21037192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68018.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	66.93	70.96	34.22	81.64	55.98	90.02	91.89	70.75	57.46
Merged-chr12-111449462-3	chr12	111448972	111449972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009396, intron 7 of 11)	intron (NM_009396, intron 7 of 11)	6811.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	22.88	19.81	17.57	43.18	21.93	36.17	47.53	36.7	21.23
Merged-chrX-129749635-3	chrX	129749135	129750135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172493)	promoter-TSS (NM_172493)	-107.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	31.46	19.35	14.8	22.27	28.46	23.31	16.9	19.9	31.23
Merged-chr2-181287666-4	chr2	181287191	181288191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 1 of 9)	CpG	275.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	340.94	261.73	245.11	329.26	228.12	225.86	315.8	285.64	153.63
Merged-chr11-51615798-3	chr11	51615311	51616311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	132.14	147.45	127.64	124.82	150.68	115.75	142.59	153.43	93.68
Merged-chr19-10839697-3	chr19	10839187	10840187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2857.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	19.45	13.36	7.4	21.59	7.93	10.45	8.45	15.92	18.11
Merged-chr19-4019395-3	chr19	4018902	4019902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6647.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	9.15	7.37	3.7	10.12	3.27	4.82	5.28	8.4	0.0
Merged-chr17-71178708-2	chr17	71178193	71179193	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	185.35	174.18	136.89	211.86	211.33	185.68	181.66	198.98	114.91
Merged-chr16-33418092-1	chr16	33417592	33418592	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	17647.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	11.44	8.29	1.85	8.1	9.33	6.43	21.12	10.61	4.37
Merged-chr6-143114676-3	chr6	143114167	143115167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	-14515.0	NM_001109688	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	58.92	24.42	20.35	91.09	35.92	35.37	91.89	47.31	28.1
Merged-chr16-3718154-2	chr16	3717662	3718662	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161790)	promoter-TSS (NM_001161790)	-38.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	1.14	2.3	9.25	21.59	29.86	41.8	98.23	84.9	79.32
Merged-chr5-65883584-3	chr5	65883096	65884096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	20027.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	77.23	72.34	52.72	75.57	47.12	73.14	70.76	60.13	41.84
Merged-chr6-47920666-3	chr6	47920191	47921191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001145881, exon 1 of 5)	5' UTR (NM_001145881, exon 1 of 5)	123.0	NM_001145881	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	30.89	36.86	47.17	26.99	43.85	65.11	36.97	33.16	33.72
Merged-chr13-41521498-3	chr13	41521001	41522001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-34141.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	118.99	103.22	49.95	120.77	104.5	99.67	104.56	125.58	69.95
Merged-chr17-35263710-3	chr17	35263228	35264228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267808, intron 6 of 11)	CpG-6316	605.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	351.81	269.56	194.24	379.19	256.58	213.0	340.09	361.25	172.37
Merged-chr4-134000928-3	chr4	134000428	134001428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026144)	promoter-TSS (NM_026144)	-64.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	114.98	119.8	97.12	114.03	111.03	94.85	98.23	118.06	60.58
Merged-chr9-110826042-3	chr9	110825549	110826549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199471)	promoter-TSS (NM_199471)	-641.0	NM_199471	272643.0	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	4.0	4.61	7.4	9.45	8.4	4.02	2.11	4.42	0.0
Merged-chr2-109890816-3	chr2	109890315	109891315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011699)	promoter-TSS (NM_011699)	-63.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	185.35	164.5	121.17	154.51	121.29	135.84	140.47	78.71	66.82
Merged-chr1-149961108-3	chr1	149960575	149961575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	215.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	169.9	176.48	110.07	199.04	188.47	176.03	177.44	213.12	119.91
Merged-chr8-70538849-3	chr8	70538351	70539351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007924)	promoter-TSS (NM_007924)	-824.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	434.19	370.01	237.71	423.72	350.81	269.27	395.01	473.12	176.12
Merged-chr12-80109135-3	chr12	80108639	80109639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007564, exon 2 of 2)	3' UTR (NM_007564, exon 2 of 2)	3874.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	32.61	11.98	15.72	39.81	7.0	13.66	29.57	9.73	7.49
Merged-chr11-61861924-3	chr11	61861423	61862423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6831.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	120.13	100.45	133.19	122.12	66.71	90.02	109.84	107.0	57.46
Merged-chr1-43914719-3	chr1	43914223	43915223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19271.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	271.15	269.1	123.94	263.14	220.19	174.42	265.1	328.53	112.42
Merged-chr3-126628738-3	chr3	126628233	126629233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31782.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	228.82	307.8	140.59	224.01	280.37	167.19	195.39	233.91	104.92
Merged-chr14-19972623-3	chr14	19972133	19973133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	GA-rich|Low_complexity|Low_complexity	4060.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	64.07	55.29	41.62	78.94	55.05	32.15	58.09	62.35	21.23
Merged-chr13-55528617-3	chr13	55528129	55529129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013739)	promoter-TSS (NM_013739)	-91.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	28.6	35.94	30.52	37.11	28.92	45.82	31.69	24.32	26.23
Merged-chr12-73598439-3	chr12	73597940	73598940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	13644.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	81.8	54.83	35.15	78.94	52.25	69.13	55.98	50.85	36.22
Merged-chr14-61648869-3	chr14	61648369	61649369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-16759.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	150.45	164.04	103.59	157.21	127.36	103.69	146.81	162.72	59.95
Merged-chr6-17542628-2	chr6	17542126	17543126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 12 of 21)	intron (NM_008591, intron 12 of 21)	78669.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	8.01	3.69	9.25	7.42	7.46	0.0	6.34	2.65	2.5
Merged-chr5-142905974-3	chr5	142905496	142906496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007393, intron 1 of 5)	CpG	758.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	106.4	88.01	86.02	122.12	63.91	71.54	98.23	83.57	74.94
Merged-chr13-17803619-3	chr13	17803112	17804112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	1485.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	155.03	156.67	188.69	128.87	132.49	144.68	172.16	113.19	120.53
Merged-chr5-72914256-3	chr5	72913737	72914737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113423)	promoter-TSS (NM_001113423)	-125.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	151.02	145.61	177.59	155.19	146.02	126.19	157.37	127.79	109.29
Merged-chr7-28440959-3	chr7	28440450	28441450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039192)	promoter-TSS (NM_001039192)	13.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	185.35	193.99	170.19	143.71	95.63	122.98	119.35	139.72	109.29
Merged-chr1-180942459-3	chr1	180941934	180942934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-84.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	198.5	191.23	142.44	221.31	209.0	136.64	234.47	212.24	105.55
Merged-chr17-32091407-3	chr17	32090927	32091927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027316)	promoter-TSS (NR_027316)	-4.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	18.31	17.51	17.57	33.06	24.26	24.92	33.8	27.86	12.49
Merged-chr7-34389282-1	chr7	34388782	34389782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	CpG	423.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	282.02	311.03	278.41	243.57	262.64	281.33	320.02	247.61	205.47
Merged-chr6-15841896-6	chr6	15841377	15842377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121216.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	30.89	10.14	13.87	23.62	11.2	4.82	21.12	22.55	3.12
Merged-chr15-62043952-3	chr15	62043461	62044461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4704.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	101.83	131.32	91.57	82.99	70.44	72.34	155.26	141.94	84.31
Merged-chr4-119174293-3	chr4	119173786	119174786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183140)	promoter-TSS (NM_183140)	-91.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	53.2	40.09	31.45	24.96	27.52	33.76	113.01	119.39	26.85
Merged-chr1-55525310-3	chr1	55524815	55525815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	Lx9|LINE|L1	119369.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	45.19	43.77	24.05	91.09	91.9	74.75	39.08	35.37	37.47
Merged-chr5-147911317-3	chr5	147910815	147911815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16500.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	28.6	19.81	11.1	23.62	23.33	24.11	70.76	74.28	36.22
Merged-chr7-67464810-3	chr7	67464299	67465299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91941.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	69.79	105.52	79.55	60.72	73.71	81.18	86.61	87.11	77.44
Merged-chr5-72203295-3	chr5	72202780	72203780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153389)	promoter-TSS (NM_153389)	-49.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	102.4	120.26	80.47	131.57	120.83	134.23	148.92	125.58	91.18
Merged-chr4-122886527-3	chr4	122886028	122887028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-452.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	229.97	320.25	259.91	217.26	266.84	234.71	258.77	348.87	216.71
Merged-chr11-69662760-3	chr11	69662264	69663264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	-115.0	NM_011900	24070.0	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	344.38	271.86	238.64	300.92	226.26	247.57	260.88	346.66	185.48
Merged-chr13-107831352-3	chr13	107830830	107831830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	58734.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	116.13	97.69	43.47	71.52	66.24	61.89	95.06	103.91	52.46
Merged-chr1-134415413-3	chr1	134414904	134415904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	26.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	462.22	323.01	266.39	385.94	329.35	335.18	355.93	359.04	202.97
Merged-chr10-8870546-3	chr10	8869994	8870994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	15576.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	227.68	172.33	96.2	249.65	187.54	163.97	152.09	171.56	104.92
Merged-chr1-165766052-3	chr1	165765549	165766549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2291.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	481.1	465.85	294.14	497.27	454.85	313.48	419.31	593.39	239.82
Merged-chr3-115887955-3	chr3	115887457	115888457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027193)	promoter-TSS (NM_027193)	102.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	209.94	200.44	123.94	255.04	204.8	211.4	241.87	235.23	91.18
Merged-chr7-3693674-3	chr7	3693184	3694184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	74.0	NM_001164205	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	215.09	256.2	215.51	186.9	185.2	207.38	253.48	275.91	158.63
Merged-chr17-50157941-3	chr17	50157427	50158427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	32570.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	281.45	293.98	135.97	269.21	262.18	167.19	290.45	340.91	141.14
Merged-chr2-25634514-1	chr2	25634014	25635014	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6540.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	9.15	8.75	12.02	12.14	11.2	16.88	14.79	8.4	8.74
Merged-chr15-66447571-1	chr15	66447071	66448071	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019457, intron 7 of 11)	intron (NM_019457, intron 7 of 11)	53339.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	6.29	5.99	5.55	4.72	2.33	6.43	9.51	4.42	8.12
Merged-chr8-108894360-3	chr8	108893816	108894816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-42544.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	68.65	52.99	32.37	85.01	69.98	40.19	80.27	74.73	13.74
Merged-chr12-82401663-3	chr12	82401162	82402162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 12 of 23)	intron (NM_001167983, intron 12 of 23)	90313.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	18.31	21.2	17.57	18.89	13.53	11.25	26.4	24.32	15.61
Merged-chr18-42511273-3	chr18	42510768	42511768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110344)	promoter-TSS (NR_110344)	-219.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	106.97	116.58	105.44	90.41	73.71	86.01	123.57	114.96	74.32
Merged-chr7-80837926-3	chr7	80837431	80838431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24177.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	77.23	70.96	74.92	119.43	95.17	90.02	109.84	106.12	69.95
Merged-chr18-37955046-3	chr18	37954544	37955544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	-56.0	NM_010411	15183.0	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	40.62	45.62	50.87	53.98	60.18	59.48	63.37	77.82	48.71
Merged-chr11-60115343-3	chr11	60114837	60115837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	CpG	10324.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	52.06	44.24	78.62	122.12	84.9	86.01	96.11	96.83	71.2
Merged-chr12-100839427-3	chr12	100838925	100839925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 4 of 12)	intron (NM_145448, intron 4 of 12)	60099.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	34.9	52.53	46.25	12.14	21.93	31.35	25.35	35.37	30.6
Merged-chr10-24165862-3	chr10	24165362	24166362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	16545.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	44.62	63.13	38.85	47.9	43.39	32.96	51.75	39.35	51.84
Merged-chr6-115666844-3	chr6	115666347	115667347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9041.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	176.19	199.06	109.14	226.03	191.27	140.66	183.78	208.7	107.42
Merged-chr16-37814446-1	chr16	37813946	37814946	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	37391.0	NM_008047	14314.0	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	5.15	2.3	3.7	2.7	4.2	1.61	2.11	0.88	2.5
Merged-chr12-91765365-3	chr12	91764869	91765869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	21067.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	335.22	251.13	212.74	263.81	265.91	271.68	355.93	372.75	151.76
Merged-chr3-65665782-3	chr3	65665283	65666283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166659)	promoter-TSS (NM_001166659)	-445.0	NM_001037923	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	223.67	216.57	122.09	220.63	238.39	138.25	199.62	198.09	55.58
Merged-chr5-105558001-3	chr5	105557515	105558515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	38544.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	423.32	379.23	201.64	316.44	256.11	151.92	245.04	376.28	125.53
Merged-chr8-120682895-3	chr8	120682396	120683396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14576.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	18.88	19.35	24.97	35.76	18.19	26.53	24.29	25.2	8.74
Merged-chr14-103033613-3	chr14	103033116	103034116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 1 of 2)	intron (NR_045657, intron 1 of 2)	187.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	72.08	26.26	12.95	61.4	24.26	22.51	109.84	58.37	44.34
Merged-chr11-109480059-3	chr11	109479556	109480556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5836.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	45.19	28.11	19.42	47.9	22.86	22.51	50.7	22.99	12.49
Merged-chr19-53564416-3	chr19	53563921	53564921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35103.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	32.04	11.06	9.25	50.6	32.66	43.4	6.34	8.4	3.12
Merged-chr15-58015411-3	chr15	58014923	58015923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18871.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	72.08	52.07	27.75	78.27	61.58	45.01	68.65	83.57	66.82
Merged-chr8-84201628-3	chr8	84201095	84202095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6923.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	405.59	381.07	260.84	437.89	417.06	313.48	374.95	435.98	206.09
Merged-chr11-49845361-3	chr11	49844853	49845853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1398.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	38.33	57.14	43.47	41.16	28.46	36.17	109.84	91.09	48.09
Merged-chr4-6357241-3	chr4	6356757	6357757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8423.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	188.21	173.72	101.74	248.97	273.37	200.95	209.12	245.4	93.05
Merged-chrX-20929989-3	chrX	20929470	20930470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008823, intron 2 of 8)	intron (NM_008823, intron 2 of 8)	1585.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	64.07	86.17	80.47	73.54	57.85	66.71	108.79	119.39	41.22
Merged-chrM-2276-1	chrM	1776	2776	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											267.72	221.18	21.27	149.79	31.72	30.54	139.42	45.1	26.23
Merged-chr8-126778867-3	chr8	126778373	126779373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-70147.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	41.76	15.21	16.65	33.74	26.12	9.65	180.61	191.46	103.67
Merged-chr8-23256712-2	chr8	23256236	23257236	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042484, exon 2 of 6)	exon (NM_001042484, exon 2 of 6)	344.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	138.44	107.36	146.14	126.85	104.03	137.45	157.37	140.17	103.67
Merged-chr1-165639732-3	chr1	165639235	165640235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5194.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	62.35	48.38	48.1	64.1	40.12	63.5	50.7	65.44	51.21
Merged-chr6-35539870-3	chr6	35539373	35540373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008098)	promoter-TSS (NM_008098)	15.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	89.24	65.89	60.12	72.19	87.24	95.65	60.2	75.17	66.82
Merged-chr15-27702916-3	chr15	27702407	27703407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21365.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	120.7	109.21	87.87	107.28	114.29	87.61	90.83	110.98	64.33
Merged-chr10-127063460-3	chr10	127062947	127063947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-88.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	127.57	105.52	47.17	165.31	150.22	79.58	122.52	76.49	24.36
Merged-chr10-25359807-3	chr10	25359316	25360316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358755)	promoter-TSS (NM_001358755)	18.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	242.55	167.26	158.17	209.16	124.09	157.54	237.64	139.28	99.3
Merged-chr3-69127124-3	chr3	69126624	69127624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-32.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	301.47	243.75	192.39	385.94	276.17	263.64	255.6	237.44	141.77
Merged-chr11-46804631-3	chr11	46804147	46805147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6152.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	46.34	46.54	18.5	55.33	35.92	57.87	50.7	42.45	35.6
Merged-chr13-74770674-3	chr13	74770169	74771169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301156)	promoter-TSS (NM_001301156)	67.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	45.76	32.72	23.12	48.58	49.45	54.66	63.37	61.02	36.22
Merged-chr12-33429555-3	chr12	33429029	33430029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172253)	promoter-TSS (NM_172253)	-95.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	196.79	211.04	160.94	158.56	215.06	150.31	175.33	172.0	96.18
Merged-chr19-5460645-3	chr19	5460145	5461145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253832)	promoter-TSS (NM_001253832)	38.0	NM_021438	58249.0	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	60.64	63.13	57.35	61.4	41.05	80.38	59.15	56.16	69.32
Merged-chr10-24950412-3	chr10	24949902	24950902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22932.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	2.86	1.84	14.8	6.07	10.26	11.25	6.34	12.38	13.12
Merged-chr9-121718398-3	chr9	121717907	121718907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-774.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	411.31	429.91	266.39	373.12	457.64	286.95	337.98	521.32	204.85
Merged-chr7-27605743-1	chr7	27605243	27606243	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-54.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	10.3	9.22	5.55	8.77	3.73	17.68	97.17	119.83	98.68
Merged-chr10-57793147-3	chr10	57792651	57793651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1393.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	132.72	207.35	92.5	151.81	133.42	136.64	128.85	171.12	81.19
Merged-chr5-127615624-3	chr5	127615141	127616141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1751.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	95.53	119.34	107.29	108.63	102.63	117.35	113.01	141.49	106.79
Merged-chr4-139199272-3	chr4	139198768	139199768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	5157.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	267.15	304.58	219.21	273.94	222.99	212.2	239.75	345.77	171.75
Merged-chr3-96245263-3	chr3	96244725	96245725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-232.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	236.83	281.08	149.84	269.21	287.84	213.0	259.82	292.27	170.5
Merged-chr1-191171771-1	chr1	191171271	191172271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 3 of 3)	intron (NM_007498, intron 3 of 3)	-6954.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.86	2.3	9.25	4.05	2.8	0.0	2.11	2.21	5.0
Merged-chr5-129895676-3	chr5	129895177	129896177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183088)	promoter-TSS (NM_183088)	-46.0	NM_001359408	71970.0	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	10.3	10.14	4.62	8.1	9.8	4.02	11.62	1.77	5.0
Merged-chr1-75435968-3	chr1	75435453	75436453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357171)	promoter-TSS (NM_001357171)	17.0	NM_001357169	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	82.38	89.39	57.35	81.64	60.18	39.39	66.54	74.73	32.48
Merged-chr10-68283265-3	chr10	68282759	68283759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4533.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	152.17	123.03	106.37	158.56	97.97	134.23	170.05	182.62	86.81
Merged-chr9-104233287-3	chr9	104232794	104233794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	29636.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	86.38	110.59	68.45	145.74	93.77	98.06	233.42	252.48	76.19
Merged-chr12-112897105-1	chr12	112896605	112897605	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	23436.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	69.22	56.68	30.52	43.86	19.13	24.92	25.35	10.17	13.12
Merged-chr7-88255070-3	chr7	88254581	88255581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-23004.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	55.49	83.86	47.17	39.13	37.79	48.23	43.3	68.54	43.09
Merged-chr7-4099029-1	chr7	4098529	4099529	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	-20501.0	NM_001109765	57776.0	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	1.72	0.92	1.85	3.37	3.27	0.0	15.84	6.19	5.0
Merged-chr1-131089890-3	chr1	131089383	131090383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7960.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	85.81	71.88	68.45	136.97	83.04	73.14	98.23	88.88	51.21
Merged-chr19-42091100-3	chr19	42090606	42091606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	671.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	372.41	242.37	314.48	369.75	208.06	262.04	344.32	259.99	191.73
Merged-chr5-117888290-3	chr5	117887798	117888798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	21459.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	52.06	71.42	57.35	72.87	52.72	106.9	63.37	47.31	51.21
Merged-chr13-19395856-3	chr13	19395351	19396351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024270)	promoter-TSS (NM_024270)	-38.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	247.13	337.29	289.51	253.02	253.31	267.66	315.8	259.11	181.74
Merged-chr7-75796604-3	chr7	75796096	75797096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51742.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	37.76	29.49	29.6	39.13	32.66	37.78	63.37	49.96	36.85
Merged-chr4-40269849-3	chr4	40269342	40270342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134097)	promoter-TSS (NM_134097)	-1.0	NM_134097	106021.0	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	252.28	290.29	161.87	251.67	247.72	211.4	227.08	247.17	165.5
Merged-chr8-13105589-3	chr8	13105088	13106088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	-133.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	331.22	358.49	280.26	255.04	331.22	297.4	298.9	336.93	176.12
Merged-chr18-63692437-3	chr18	63691949	63692949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016792)	promoter-TSS (NM_016792)	-90.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	442.77	573.22	314.48	479.72	563.08	363.31	453.1	471.35	265.42
Merged-chr14-55884953-3	chr14	55884452	55885452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019820)	promoter-TSS (NM_019820)	10.0	NR_138134	219094.0	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	154.45	133.17	117.47	142.37	90.97	114.94	128.85	100.81	93.05
Merged-chr14-66845701-3	chr14	66845200	66846200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	22900.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	52.63	70.96	39.77	76.24	53.18	38.58	76.05	87.11	74.94
Merged-chr6-51520865-3	chr6	51520346	51521346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-3057.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	26.89	54.83	24.97	27.66	22.86	48.23	30.63	34.93	29.35
Merged-chr10-86881712-3	chr10	86881227	86882227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	MTE2a|LTR|ERVL-MaLR	102722.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	205.37	160.81	146.14	187.57	152.08	135.04	182.72	163.6	91.81
Merged-chr1-159232142-3	chr1	159231597	159232597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-103.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	164.75	160.81	123.02	123.47	110.56	139.06	157.37	138.4	116.16
Merged-chr4-123572128-3	chr4	123571631	123572631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-44289.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	209.37	195.83	127.64	169.35	115.69	144.68	189.06	158.3	100.55
Merged-chr7-128133847-3	chr7	128133351	128134351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021334, intron 8 of 29)	intron (NM_021334, intron 8 of 29)	4283.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	53.2	53.45	22.2	37.11	36.85	34.56	34.85	39.35	59.95
Merged-chr3-137953341-3	chr3	137952847	137953847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28202.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	108.12	127.64	81.4	120.1	96.1	110.12	117.24	158.74	78.69
Merged-chr9-20997304-3	chr9	20996819	20997819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-5418.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	64.07	68.2	85.1	77.59	83.51	85.2	85.55	120.27	43.72
Merged-chr13-93301173-3	chr13	93300664	93301664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	97.25	141.0	85.1	90.41	101.7	83.59	84.49	140.61	99.3
Merged-chr11-117195729-3	chr11	117195224	117196224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3937.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	135.0	122.57	81.4	107.95	112.9	86.81	155.26	155.64	33.72
Merged-chr2-180042517-3	chr2	180042011	180043011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	28.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	371.83	326.7	308.93	327.24	306.96	291.78	372.83	285.64	285.41
Merged-chr7-19149405-3	chr7	19148910	19149910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-214.0	NM_026111	67369.0	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	65.79	88.93	82.32	56.0	57.38	73.14	60.2	91.09	44.34
Merged-chr5-148464596-3	chr5	148464107	148465107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64703.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	52.63	71.42	65.67	96.48	100.3	93.24	86.61	82.24	68.7
Merged-chr7-142387944-3	chr7	142387431	142388431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-61.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	231.68	213.34	168.34	250.99	218.79	212.2	279.89	270.16	146.76
Merged-chr3-94879947-1	chr3	94879447	94880447	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172683, exon 19 of 19)	exon (NM_172683, exon 19 of 19)	7011.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	10.87	7.83	3.7	8.1	9.33	3.22	10.56	11.05	5.0
Merged-chr5-24416301-3	chr5	24415804	24416804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183000, intron 4 of 10)	intron (NM_183000, intron 4 of 10)	2853.0	NM_001310474	171209.0	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	5.15	3.23	1.85	4.72	7.93	9.65	2.11	0.88	13.12
Merged-chr3-121630801-3	chr3	121630301	121631301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12684.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	36.04	16.59	16.65	18.89	8.86	10.45	26.4	28.3	25.61
Merged-chr15-84923234-3	chr15	84922728	84923728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016714)	promoter-TSS (NM_016714)	-200.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	226.53	210.58	193.32	219.96	206.2	156.74	217.57	199.42	138.65
Merged-chr16-18289032-1	chr16	18288532	18289532	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033324, intron 1 of 13)	CpG	136.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	40.04	41.93	44.4	42.51	16.33	35.37	68.65	26.97	44.97
Merged-chr17-81703459-3	chr17	81702963	81703963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34924.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	151.02	137.77	115.62	122.8	118.96	122.98	108.79	137.51	101.8
Merged-chr11-52360957-3	chr11	52360430	52361430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011694)	promoter-TSS (NM_011694)	68.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	302.04	371.39	312.63	362.32	467.91	303.83	353.82	382.03	214.84
Merged-chr8-14911575-3	chr8	14911066	14912066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172751)	promoter-TSS (NM_172751)	-97.0	NM_172751	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	4.58	4.15	7.4	12.14	4.67	3.22	8.45	3.54	1.25
Merged-chr6-87811902-4	chr6	87811432	87812432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039394)	promoter-TSS (NM_001039394)	-153.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	334.65	228.09	291.36	274.61	196.4	213.0	248.2	245.4	166.12
Merged-chr4-133212608-3	chr4	133212100	133213100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008154)	promoter-TSS (NM_008154)	-64.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	69.22	24.88	7.4	60.72	29.39	12.86	32.74	26.09	6.25
Merged-chr5-110653442-3	chr5	110652883	110653883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027156)	promoter-TSS (NM_027156)	-1.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	98.39	103.22	65.67	96.48	82.11	85.2	88.72	67.21	36.22
Merged-chr7-12965815-3	chr7	12965313	12966313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362139)	promoter-TSS (NM_001362139)	-25.0	NM_001362140	243834.0	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	203.08	212.88	155.39	153.16	162.81	111.73	166.88	203.84	84.94
Merged-chr17-15705580-3	chr17	15705064	15706064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	597.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	318.06	300.43	271.94	284.73	226.26	223.45	261.93	213.12	197.98
Merged-chr2-72979796-3	chr2	72979299	72980299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098425)	promoter-TSS (NM_001098425)	367.0	NR_045269	100503849.0	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	288.32	212.42	290.44	257.07	164.21	215.42	227.08	182.17	181.11
Merged-chr6-54817650-3	chr6	54817151	54818151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199143, intron 1 of 4)	intron (NM_199143, intron 1 of 4)	735.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	172.76	156.67	147.99	172.73	153.01	133.43	182.72	131.77	121.78
Merged-chr9-21526160-3	chr9	21525684	21526684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	7.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	168.76	151.6	160.94	190.27	123.16	195.32	203.84	222.41	153.63
Merged-chr15-103240341-3	chr15	103239849	103240849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-48.0	NR_104427	15382.0	Mm.237064	NM_010447	ENSMUSG00000046434	Hnrnpa1	HDP-1|Hdp|Hnrpa1|hnRNP A1|hnrnp-A1	heterogeneous nuclear ribonucleoprotein A1	protein-coding	368.97	347.89	213.66	342.08	321.42	233.1	303.13	393.09	187.36
Merged-chr7-35647516-3	chr7	35647023	35648023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-41.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	50.91	23.04	14.8	33.06	20.53	36.17	67.6	31.84	27.48
Merged-chr18-60212032-3	chr18	60211536	60212536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-41.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	79.52	105.06	93.42	87.71	90.97	84.4	121.46	155.2	90.56
Merged-chr1-156036102-3	chr1	156035622	156036622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160182)	promoter-TSS (NM_001160182)	86.0	NM_001160182	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	571.48	458.48	300.61	523.58	418.92	290.97	396.07	412.1	257.31
Merged-chr1-64301457-5	chr1	64300965	64301965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180076.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	287.74	233.62	92.5	234.13	236.05	216.22	207.01	252.92	124.91
Merged-chr1-4857701-3	chr1	4857202	4858202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011541)	promoter-TSS (NM_011541)	8.0	NM_011541	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	168.76	129.94	129.49	111.33	99.37	106.1	122.52	99.05	75.57
Merged-chr8-22398508-3	chr8	22397997	22398997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045473)	promoter-TSS (NR_045473)	124.0	NM_181325	18408.0	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	44.05	29.03	29.6	53.3	25.66	31.35	38.02	16.8	26.85
Merged-chr11-114723320-3	chr11	114722788	114723788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4124.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	26.31	9.68	5.55	29.01	17.73	5.63	20.07	8.4	7.49
Merged-chr3-27742349-3	chr3	27741838	27742838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31886.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	8.58	10.14	1.85	14.17	13.53	22.51	9.51	5.75	2.5
Merged-chr1-91494611-3	chr1	91494109	91495109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028718)	promoter-TSS (NM_028718)	-59.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	15.45	3.23	7.4	20.92	5.13	5.63	21.12	9.73	3.75
Merged-chr11-114898242-3	chr11	114897748	114898748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170758, intron 4 of 6)	intron (NM_170758, intron 4 of 6)	8207.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	244.27	195.83	125.79	239.52	162.81	226.67	190.11	217.55	136.77
Merged-chr7-31111229-3	chr7	31110722	31111722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-225.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	262.57	207.35	97.12	251.67	164.68	86.81	247.15	214.45	89.93
Merged-chr9-53007671-3	chr9	53007163	53008163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	240449.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	43.48	38.25	20.35	42.51	27.06	16.88	42.25	30.51	13.74
Merged-chr18-32067870-3	chr18	32067371	32068371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173441, exon 1 of 14)	5' UTR (NM_173441, exon 1 of 14)	137.0	NM_173441	73473.0	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	440.48	534.97	283.96	346.13	438.98	307.05	360.16	402.81	219.83
Merged-chr6-125445474-3	chr6	125444962	125445962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR85a|LTR|Gypsy?	49298.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	57.78	34.56	20.35	58.03	25.19	29.74	58.09	62.79	24.98
Merged-chr7-6172244-3	chr7	6171749	6172749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-264.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	92.1	116.58	103.59	107.95	99.83	67.52	141.53	126.9	54.96
Merged-chrX-56482097-3	chrX	56481593	56482593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 6 of 16)	intron (NM_172779, intron 6 of 16)	27254.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	21.17	26.26	12.02	31.71	20.53	27.33	28.52	34.05	33.72
Merged-chr13-98263081-3	chr13	98262578	98263578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178918)	promoter-TSS (NM_178918)	2.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	373.55	407.33	279.34	414.95	380.2	285.34	376.0	401.49	193.6
Merged-chr5-102502572-3	chr5	102502079	102503079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	21188.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	30.32	19.81	11.1	41.16	30.32	24.11	31.69	28.74	28.1
Merged-chr4-149790823-3	chr4	149790345	149791345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-16578.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	247.7	147.45	169.27	269.21	125.49	168.8	222.86	189.25	118.66
Merged-chr1-177714182-3	chr1	177713690	177714690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-15624.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	28.6	41.01	44.4	31.04	35.45	40.99	50.7	47.75	38.72
Merged-chr4-40757884-3	chr4	40757375	40758375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021535)	promoter-TSS (NM_021535)	10.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	180.2	200.9	153.54	164.63	187.54	161.56	170.05	167.58	138.65
Merged-chr6-108554769-3	chr6	108554269	108555269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65026.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	70.93	67.27	54.57	80.97	60.65	75.56	83.44	85.78	19.36
Merged-chr4-108328286-3	chr4	108327768	108328768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027250, exon 1 of 3)	exon (NM_027250, exon 1 of 3)	116.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	303.76	234.08	154.47	240.2	219.26	169.6	252.43	288.29	99.92
Merged-chr2-170343324-3	chr2	170342840	170343840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13021.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	104.11	76.95	88.8	104.58	81.17	55.46	122.52	109.66	34.97
Merged-chr7-28809621-3	chr7	28809139	28810139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-1251.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	453.64	583.35	384.78	433.17	473.97	352.86	427.76	583.66	302.9
Merged-chr6-34875459-3	chr6	34874999	34875999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_197986)	TTS (NM_197986)	2566.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	164.18	113.81	63.82	193.64	136.22	102.88	70.76	74.28	48.09
Merged-chr17-71486738-1	chr17	71486238	71487238	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11395.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	122.42	127.64	123.02	103.91	102.63	151.11	262.99	305.1	176.12
Merged-chrX-75131006-3	chrX	75130506	75131506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008621)	promoter-TSS (NM_008621)	10.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	49.2	68.2	37.0	56.68	56.45	49.83	39.08	64.56	28.73
Merged-chr8-128491893-3	chr8	128491394	128492394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132653.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	45.19	39.63	24.05	40.48	31.72	40.99	58.09	35.37	28.1
Merged-chr10-126901339-3	chr10	126900836	126901836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026858)	promoter-TSS (NM_026858)	35.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	20.02	15.67	5.55	18.89	21.93	19.29	25.35	20.78	5.0
Merged-chr12-12302027-3	chr12	12301513	12302513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39874.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	124.71	118.88	105.44	111.33	83.51	94.85	137.3	122.92	74.32
Merged-chr19-34846607-3	chr19	34846099	34847099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-25826.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	82.95	75.11	51.8	74.22	51.32	47.42	101.39	112.31	29.98
Merged-chr13-80941031-3	chr13	80940527	80941527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_103550, intron 1 of 4)	AmnSINE1|SINE|Deu	624.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	12.01	23.5	15.72	39.13	27.52	49.83	38.02	19.01	24.36
Merged-chr7-4685130-3	chr7	4684620	4685620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360629)	promoter-TSS (NM_001360629)	-139.0	NM_024172	66245.0	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	114.98	110.59	128.57	106.61	84.9	127.0	111.96	98.16	92.43
Merged-chr15-12117807-3	chr15	12117305	12118305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-46.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	375.84	339.6	224.76	354.9	318.16	302.22	325.31	260.44	179.24
Merged-chr1-91458391-3	chr1	91457893	91458893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	935.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	51.48	49.76	15.72	34.41	28.92	18.49	58.09	38.03	23.73
Merged-chr9-13442459-1	chr9	13441959	13442959	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11098.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	9.72	6.45	5.55	8.77	7.93	1.61	7.39	0.44	2.5
Merged-chr14-19777615-3	chr14	19777116	19778116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	26359.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	61.78	69.12	41.62	50.6	42.92	64.3	44.36	30.95	17.49
Merged-chr16-33891763-3	chr16	33891267	33892267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62102.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	145.3	117.04	112.84	149.11	138.09	120.57	149.98	182.62	103.67
Merged-chr18-32377171-3	chr18	32376677	32377677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-40.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	128.14	125.79	97.12	103.23	76.04	102.08	134.14	153.87	101.17
Merged-chr5-149636749-3	chr5	149636244	149637244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-408.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	24.6	22.12	10.17	19.57	25.19	28.13	26.4	21.67	17.49
Merged-chr7-80782439-3	chr7	80781957	80782957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	20874.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	161.32	131.32	89.72	234.8	185.67	130.21	156.32	156.53	95.55
Merged-chr17-10318263-3	chr17	10317761	10318761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	CpG	1100.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	123.56	170.95	213.66	135.62	124.09	125.39	181.66	135.75	121.78
Merged-chr1-162571567-3	chr1	162571045	162572045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	CpG	717.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	414.74	380.61	210.89	414.95	364.34	305.44	397.13	490.81	202.97
Merged-chr9-118655102-3	chr9	118654590	118655590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 5 of 27)	intron (NM_133721, intron 5 of 27)	48381.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	147.02	103.22	79.55	144.39	95.17	135.04	151.03	120.71	70.57
Merged-chr15-102350794-3	chr15	102350297	102351297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	-30.0	NR_155425	102640093.0	Mm.385825	NR_155425	ENSMUSG00000116402	Gm36246	-	predicted gene, 36246	ncRNA	100.68	100.91	66.6	97.16	104.5	95.65	100.34	110.1	72.45
Merged-chr8-106058806-3	chr8	106058300	106059300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010901)	promoter-TSS (NM_010901)	-803.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	136.72	143.76	125.79	149.11	150.22	150.31	139.42	155.2	89.31
Merged-chr11-75541151-3	chr11	75540667	75541667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	9055.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	129.86	76.03	79.55	121.45	73.71	106.1	94.0	89.32	53.08
Merged-chr11-116616978-3	chr11	116616476	116617476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	7276.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	334.65	346.51	216.44	329.94	267.78	229.88	314.74	427.58	189.23
Merged-chr3-38102681-3	chr3	38102161	38103161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105458.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	21.17	23.5	9.25	17.54	15.86	17.68	12.67	11.94	9.37
Merged-chr2-11596821-3	chr2	11596311	11597311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 3 of 11)	intron (NM_152824, intron 3 of 11)	6388.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	78.94	72.34	37.0	97.83	71.84	76.36	84.49	92.86	33.1
Merged-chr12-102282307-3	chr12	102281819	102282819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177620)	promoter-TSS (NM_177620)	-755.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	44.62	42.85	53.65	49.93	58.31	60.28	34.85	50.41	28.73
Merged-chr4-62283088-3	chr4	62282598	62283598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3331.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	133.29	144.69	111.92	111.33	92.84	94.85	175.33	181.29	122.41
Merged-chr19-3880610-3	chr19	3880110	3881110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	24620.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	56.63	60.82	41.62	56.68	51.32	56.27	53.87	69.42	43.09
Merged-chr3-139062296-3	chr3	139061781	139062781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	12920.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	24.6	34.1	34.22	38.46	32.19	40.19	55.98	45.1	38.1
Merged-chr7-90071645-3	chr7	90071151	90072151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42492.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	34.9	17.97	12.95	53.3	41.05	34.56	49.64	29.18	18.11
Merged-chr6-108307426-3	chr6	108306908	108307908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	94312.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	69.22	84.32	38.85	63.42	67.64	57.87	62.31	49.52	39.35
Merged-chr15-66662174-3	chr15	66661682	66662682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-8588.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	34.32	12.9	18.5	14.84	8.4	18.49	15.84	14.59	14.36
Merged-chr18-6136106-3	chr18	6135584	6136584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	14.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	250.56	236.38	158.17	203.76	172.14	177.64	233.42	233.46	163.63
Merged-chr12-102297216-3	chr12	102296714	102297714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	RLTR11A2|LTR|ERVK	13573.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	47.48	51.61	21.27	66.8	71.38	54.66	30.63	34.49	17.49
Merged-chr9-108809932-3	chr9	108809433	108810433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030729, intron 1 of 12)	intron (NM_030729, intron 1 of 12)	1553.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	28.03	39.17	43.47	42.51	16.33	40.99	30.63	33.6	38.1
Merged-chr2-31670696-3	chr2	31670183	31671183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144886)	promoter-TSS (NM_144886)	-32.0	NM_144886	227715.0	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	13.73	12.9	3.7	10.8	11.66	20.09	25.35	19.01	11.24
Merged-chr5-28037377-3	chr5	28036883	28037883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34029.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	125.85	180.17	105.44	180.82	194.53	157.54	184.83	221.53	96.8
Merged-chr2-166471636-4	chr2	166471107	166472107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24156.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	150.45	121.65	101.74	183.52	124.56	118.96	151.03	125.13	80.56
Merged-chr11-102316819-3	chr11	102316340	102317340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011551, intron 1 of 20)	CpG	447.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	127.57	86.17	144.29	94.46	49.45	75.56	107.73	71.63	58.08
Merged-chr7-80386720-3	chr7	80386225	80387225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010194, intron 3 of 18)	intron (NM_010194, intron 3 of 18)	1221.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	73.22	64.97	74.92	69.5	51.78	69.93	86.61	102.14	66.82
Merged-chr12-51718814-3	chr12	51718301	51719301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 2 of 5)	intron (NM_001329698, intron 2 of 5)	-26887.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	28.6	25.8	9.25	24.96	17.26	20.09	23.24	12.82	12.49
Merged-chr8-126979742-3	chr8	126979234	126980234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151744)	promoter-TSS (NR_151744)	-296.0	NR_151744	629746.0	Mm.264954	NR_151744		Gm29688	-	predicted gene, 29688	ncRNA	7.44	10.14	3.7	22.94	10.26	11.25	26.4	15.03	5.0
Merged-chr3-98046576-3	chr3	98046090	98047090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	MIR3|SINE|MIR	33052.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	72.08	105.06	84.17	76.92	69.98	73.95	80.27	104.79	51.21
Merged-chr1-16216780-3	chr1	16216281	16217281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110899.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	5.72	4.61	16.65	9.45	5.13	8.04	6.34	2.21	0.0
Merged-chr12-28649593-3	chr12	28649083	28650083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104608)	promoter-TSS (NR_104608)	-19.0	NR_104608	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	108.69	155.28	117.47	107.95	128.76	151.92	143.64	156.53	72.45
Merged-chr12-113140288-3	chr12	113139743	113140743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	7.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	99.54	75.11	44.4	71.52	54.58	37.78	36.97	55.27	24.98
Merged-chr6-82045343-2	chr6	82044844	82045844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	3716.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	49.77	28.11	36.07	61.4	45.72	19.29	1.06	3.1	0.0
Merged-chr11-55468799-3	chr11	55468320	55469320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-932.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	378.13	415.17	237.71	398.08	411.93	356.08	333.75	430.67	190.48
Merged-chr5-122602391-1	chr5	122601891	122602891	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009879, intron 6 of 18)	intron (NM_009879, intron 6 of 18)	12153.0	NM_001358919	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	5.15	2.76	3.7	4.72	0.47	5.63	10.56	8.84	2.5
Merged-chr4-154878038-3	chr4	154877551	154878551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013783, intron 2 of 23)	ORR1E|LTR|ERVL-MaLR	-6048.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	4.58	5.07	0.0	4.72	0.93	0.8	52.81	31.39	36.22
Merged-chr10-53344097-3	chr10	53343613	53344613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	6427.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	82.95	84.78	42.55	58.7	65.78	45.01	72.88	114.08	41.22
Merged-chr16-95833570-3	chr16	95832973	95833973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	65240.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	91.53	65.89	51.8	97.16	68.58	67.52	70.76	68.09	44.34
Merged-chr13-22022458-2	chr13	22021953	22022953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Ser-TCG|tRNA|tRNA	-12712.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	16.59	21.66	12.02	8.1	6.06	11.25	7.39	2.21	6.25
Merged-chr17-27850742-1	chr17	27850242	27851242	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011432, intron 5 of 5)	intron (NM_011432, intron 5 of 5)	-5765.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	169.33	139.16	73.07	244.25	202.46	104.49	248.2	282.54	108.04
Merged-chr12-85468891-3	chr12	85468408	85469408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4982.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	181.34	141.92	65.67	199.72	157.68	118.96	136.25	139.28	70.57
Merged-chr4-134289032-3	chr4	134288529	134289529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1183.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	21.74	21.66	19.42	20.24	20.06	18.49	41.19	50.41	42.47
Merged-chr16-58727929-3	chr16	58727423	58728423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_171826)	promoter-TSS (NM_171826)	13.0	NM_001252451	224250.0	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	74.94	52.99	63.82	86.36	45.72	59.48	97.17	56.16	59.95
Merged-chr6-50836168-1	chr6	50835668	50836668	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60053.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.57	2.76	16.65	2.7	3.73	6.43	20.07	10.61	17.49
Merged-chr4-9670564-2	chr4	9670049	9671049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-1205.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	57.21	44.24	55.5	15.52	13.53	26.53	76.05	52.62	41.84
Merged-chr11-51857936-3	chr11	51857448	51858448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-318.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	280.31	253.43	262.69	271.24	223.92	268.47	285.17	273.26	189.86
Merged-chr7-4812418-1	chr7	4811918	4812918	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133777)	promoter-TSS (NM_133777)	-78.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	380.42	412.86	332.06	284.73	311.63	285.34	297.84	390.43	236.7
Merged-chr2-120291793-3	chr2	120291297	120292297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2728.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	77.23	47.92	60.12	57.35	38.72	31.35	41.19	78.26	34.35
Merged-chr16-4586781-3	chr16	4586274	4587274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7939.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	128.71	144.23	101.74	130.9	126.89	120.57	166.88	160.95	81.81
Merged-chr13-49341453-3	chr13	49340937	49341937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029791)	promoter-TSS (NM_029791)	-112.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	107.55	165.88	83.25	128.87	162.34	100.47	126.74	144.15	57.46
Merged-chr2-153319395-3	chr2	153318890	153319890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 2 of 8)	intron (NM_008444, intron 2 of 8)	26420.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	41.19	53.91	24.97	48.58	31.72	34.56	44.36	47.75	39.97
Merged-chr11-74898031-3	chr11	74897530	74898530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-50.0	NM_177325	104662.0	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	64.07	73.73	76.77	68.82	76.51	80.38	82.38	81.36	54.33
Merged-chr2-160368043-3	chr2	160367548	160368548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-983.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	105.26	69.12	53.65	101.88	54.11	95.65	98.23	79.15	70.57
Merged-chr18-53266520-3	chr18	53265960	53266960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	20798.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	235.69	245.6	175.74	227.38	259.38	191.3	233.42	329.86	132.4
Merged-chr16-96208567-3	chr16	96208090	96209090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015825, intron 2 of 7)	intron (NM_015825, intron 2 of 7)	8120.0	NM_015825	50795.0	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	4.0	5.53	1.85	6.07	5.13	11.25	5.28	3.98	6.25
Merged-chr8-85555256-4	chr8	85554724	85555724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019794)	promoter-TSS (NM_019794)	47.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	479.95	425.3	414.38	439.24	415.19	286.15	459.44	393.97	266.67
Merged-chr7-145283234-3	chr7	145282732	145283732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	779.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	207.66	187.08	192.39	219.28	198.27	178.44	205.96	216.22	85.56
Merged-chr2-4450070-3	chr2	4449570	4450570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	49094.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	80.09	49.3	27.75	72.87	44.78	39.39	87.66	97.28	28.1
Merged-chr14-60634734-3	chr14	60634226	60635226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033272)	promoter-TSS (NM_001033272)	21.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	16.02	14.75	3.7	13.49	9.33	8.04	17.96	8.84	14.36
Merged-chr10-24869889-3	chr10	24869392	24870392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027347)	promoter-TSS (NM_027347)	-94.0	NM_001166416	70208.0	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	29.17	29.95	12.02	43.86	24.72	21.7	47.53	44.22	18.74
Merged-chr8-75063614-3	chr8	75063132	75064132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136259, intron 12 of 15)	intron (NM_001136259, intron 12 of 15)	29946.0	NM_011622	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	82.95	61.75	95.27	109.98	63.91	80.38	94.0	97.28	63.08
Merged-chr5-114444165-3	chr5	114443661	114444661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023556)	promoter-TSS (NM_023556)	-108.0	NM_001306205	17855.0	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	73.79	92.62	69.37	68.15	49.92	48.23	96.11	80.92	39.97
Merged-chr7-104398667-3	chr7	104398167	104399167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40021.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	62.93	92.16	37.0	51.28	49.92	45.01	70.76	78.26	61.2
Merged-chr11-110538397-3	chr11	110537912	110538912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59072.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	52.06	57.14	36.07	40.48	39.19	41.8	43.3	39.35	31.23
Merged-chr14-54876925-5	chr14	54876448	54877448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167908, exon 1 of 2)	exon (NM_001167908, exon 1 of 2)	590.0	NM_001167908	105651.0	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	24.6	13.82	14.8	36.43	20.99	29.74	27.46	15.92	18.74
Merged-chr3-60527997-3	chr3	60527481	60528481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	26802.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	183.06	211.5	124.87	161.26	148.35	118.16	217.57	281.22	97.43
Merged-chr13-5614384-3	chr13	5613884	5614884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243708.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	84.66	86.17	66.6	120.1	93.3	94.04	63.37	53.94	66.82
Merged-chr17-37276065-3	chr17	37275524	37276524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	4394.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	40.04	56.22	55.5	26.99	25.66	50.64	43.3	55.71	49.96
Merged-chr5-3198562-3	chr5	3198057	3199057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-145336.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	104.69	101.37	47.17	104.58	94.23	69.93	60.2	52.62	41.22
Merged-chr14-37135377-3	chr14	37134896	37135896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199122)	promoter-TSS (NM_001199122)	-74.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	252.28	302.27	221.06	253.69	285.5	199.34	270.38	286.97	143.02
Merged-chr3-27689603-3	chr3	27689096	27690096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	G-rich|Low_complexity|Low_complexity	20856.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	279.73	224.4	133.19	271.91	242.58	176.03	203.84	261.32	132.4
Merged-chr3-121491083-3	chr3	121490565	121491565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	41279.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	28.6	24.42	16.65	26.99	11.2	12.86	32.74	20.34	11.24
Merged-chr3-39269595-1	chr3	39269095	39270095	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	382655.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	15.45	29.49	6.47	1.35	5.13	1.61	111.96	145.92	58.71
Merged-chr2-6478493-3	chr2	6477988	6478988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125752.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	106.4	90.31	37.0	154.51	157.68	106.9	98.23	82.24	68.7
Merged-chr4-116685673-3	chr4	116685153	116686153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011034)	promoter-TSS (NM_011034)	54.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	249.99	231.77	167.42	284.73	250.52	226.67	252.43	254.69	196.1
Merged-chr3-88746453-3	chr3	88745955	88746955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26144.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	143.59	114.74	102.67	98.51	65.78	52.25	86.61	107.0	21.86
Merged-chr14-121873347-3	chr14	121872853	121873853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4917.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	36.61	49.3	38.85	42.51	39.65	32.96	26.4	30.51	30.6
Merged-chr1-66700836-3	chr1	66700371	66701371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	40.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	61.78	68.2	46.25	68.82	76.51	82.79	108.79	68.98	41.84
Merged-chr7-19573346-3	chr7	19572835	19573835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027189)	promoter-TSS (NM_027189)	8.0	NM_027189	69731.0	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem nuclear organelle associated protein 7	protein-coding	60.07	58.52	65.67	69.5	53.65	80.38	92.94	72.07	53.71
Merged-chr10-112002763-3	chr10	112002266	112003266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5502.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	10.3	10.6	6.47	8.77	10.73	4.82	9.51	5.75	3.75
Merged-chr15-102518094-3	chr15	102517616	102518616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009319)	promoter-TSS (NM_009319)	-76.0	NM_001253795	21357.0	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	94.96	122.11	103.59	94.46	78.37	103.69	116.18	130.44	85.56
Merged-chr10-81298078-3	chr10	81297590	81298590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	5127.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	675.6	565.84	372.76	734.09	656.38	518.44	480.56	638.05	291.03
Merged-chr16-87432604-3	chr16	87432095	87433095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081068)	promoter-TSS (NM_001081068)	11.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	102.97	104.6	91.57	80.29	63.45	66.71	101.39	87.11	43.72
Merged-chr19-29431165-3	chr19	29430641	29431641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	20222.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	88.67	100.45	48.1	79.62	54.58	98.06	102.45	113.19	74.32
Merged-chr5-103911215-3	chr5	103910716	103911716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359986)	promoter-TSS (NM_001359986)	43.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	26.89	11.06	13.87	26.31	15.39	11.25	30.63	7.96	5.0
Merged-chr2-24934826-3	chr2	24934315	24935315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178408, intron 1 of 7)	CpG	466.0	NR_027876	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	53.2	56.68	73.07	81.64	65.31	89.22	76.05	69.86	64.95
Merged-chr17-12754767-3	chr17	12754267	12755267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13456.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	167.61	138.24	81.4	179.47	188.0	131.02	218.63	226.83	112.42
Merged-chr8-70616067-3	chr8	70615565	70616565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	-779.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	306.62	269.1	209.96	312.39	194.53	200.14	314.74	384.24	171.12
Merged-chr13-30702397-3	chr13	30701894	30702894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	42335.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	60.07	52.07	35.15	44.53	19.59	19.29	23.24	16.8	20.61
Merged-chr10-53398433-3	chr10	53397972	53398972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11410.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	58.35	54.37	49.95	66.12	47.12	55.46	69.71	90.64	48.09
Merged-chr2-91070500-5	chr2	91070011	91071011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026721)	promoter-TSS (NM_026721)	-196.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	223.1	135.47	114.69	190.95	93.77	135.84	158.43	129.55	76.19
Merged-chr17-13867141-3	chr17	13866652	13867652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-81221.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	125.28	166.8	95.27	122.12	126.89	88.42	82.38	93.74	74.94
Merged-chr19-10803937-3	chr19	10803431	10804431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	26127.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	29.75	20.74	18.5	10.12	11.2	21.7	14.79	15.48	11.24
Merged-chr13-9878678-3	chr13	9878188	9879188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-113367.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	109.83	70.5	52.72	86.36	62.51	80.38	106.67	113.19	64.95
Merged-chr4-62357914-3	chr4	62357420	62358420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	2676.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	106.4	118.42	74.0	72.19	83.97	69.93	74.99	91.53	85.56
Merged-chr11-45926852-3	chr11	45926361	45927361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18074.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	12.59	15.67	9.25	9.45	10.73	11.25	6.34	4.42	9.37
Merged-chr9-107629284-3	chr9	107628781	107629781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	6061.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	88.1	58.06	57.35	88.39	48.52	77.16	63.37	63.23	66.2
Merged-chr6-145855885-3	chr6	145855383	145856383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9537.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	15.45	11.06	7.4	14.84	11.66	12.06	4.22	4.86	1.87
Merged-chr5-100663197-3	chr5	100662709	100663709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 3 of 6)	intron (NM_027978, intron 3 of 6)	11047.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	44.62	43.77	40.7	58.7	31.26	20.9	61.26	45.54	28.73
Merged-chr5-99380406-3	chr5	99379911	99380911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-127484.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	300.9	252.51	157.24	323.19	279.91	236.31	297.84	365.23	159.88
Merged-chr8-123027909-3	chr8	123027403	123028403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	14381.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	245.98	240.53	126.72	275.96	193.13	184.87	208.07	257.78	117.41
Merged-chr8-46881485-3	chr8	46880989	46881989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105398.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	72.65	70.96	58.27	68.82	52.72	67.52	63.37	72.07	63.08
Merged-chr19-6401605-3	chr19	6401127	6402127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 1 of 16)	CpG	1044.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	58.35	61.28	103.59	69.5	55.98	105.3	114.07	102.58	77.44
Merged-chr15-101984459-3	chr15	101983972	101984972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19870.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	113.27	123.49	92.5	72.19	58.78	51.44	84.49	88.88	62.45
Merged-chr2-181242041-3	chr2	181241537	181242537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183162)	promoter-TSS (NM_183162)	-10.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	231.11	228.09	162.79	220.63	166.54	172.81	296.79	288.29	153.63
Merged-chr4-132494764-3	chr4	132494273	132495273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 8 of 9)	intron (NM_144907, intron 8 of 9)	15683.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	117.27	91.7	43.47	142.37	108.23	72.34	116.18	106.56	52.46
Merged-chr7-133744792-3	chr7	133744280	133745280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15489.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	29.17	35.02	24.05	49.25	38.25	56.27	33.8	56.16	36.85
Merged-chrX-96026068-3	chrX	96025558	96026558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69084.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	11.44	12.9	5.55	16.19	12.6	15.27	12.67	11.5	14.36
Merged-chr17-35379492-3	chr17	35378950	35379950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143689)	promoter-TSS (NM_001143689)	-167.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	405.59	276.93	217.36	333.31	265.44	172.01	271.44	275.91	131.15
Merged-chr6-124477575-3	chr6	124477080	124478080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12796.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	172.19	169.11	86.02	195.67	113.83	70.73	135.19	132.65	58.08
Merged-chr5-139286746-3	chr5	139286243	139287243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	33246.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	216.81	227.63	239.56	227.38	208.06	254.0	238.7	294.48	146.76
Merged-chr1-155475184-3	chr1	155474699	155475699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	51912.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	33.18	16.59	12.02	24.96	17.26	17.68	24.29	14.59	10.62
Merged-chr13-49191866-3	chr13	49191331	49192331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	4284.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	107.55	105.52	103.59	194.32	168.41	169.6	180.61	171.12	96.18
Merged-chr3-21935693-3	chr3	21935192	21936192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140960.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	186.49	259.88	141.52	191.62	225.79	172.81	224.97	309.52	130.53
Merged-chr18-34887532-3	chr18	34887036	34888036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	26329.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	53.77	24.42	18.5	33.06	19.59	32.96	69.71	35.37	23.73
Merged-chr8-11758362-3	chr8	11757865	11758865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113518)	promoter-TSS (NM_001113518)	35.0	NM_001113518	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	159.6	174.64	125.79	139.67	139.95	145.49	192.23	150.78	125.53
Merged-chr10-52233552-3	chr10	52233048	52234048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-71.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	38.33	34.1	19.42	68.82	43.85	40.19	34.85	12.82	14.99
Merged-chr8-83332557-3	chr8	83332045	83333045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-59.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	74.94	83.4	42.55	80.29	72.78	66.71	81.33	70.75	37.47
Merged-chr19-5816146-3	chr19	5815640	5816640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13468.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	71.51	44.7	40.7	116.05	42.92	81.18	48.58	37.14	44.34
Merged-chr6-120042962-3	chr6	120042447	120043447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4292.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	14.87	13.82	9.25	20.92	8.86	12.86	12.67	10.61	1.87
Merged-chr3-103021027-3	chr3	103020529	103021529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	CpG	483.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	545.17	494.42	388.48	497.27	458.58	386.62	430.92	499.65	298.52
Merged-chr5-43866748-3	chr5	43866247	43867247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2062.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	165.9	163.12	99.89	182.85	171.68	216.22	209.12	206.49	160.5
Merged-chr7-140125610-3	chr7	140125103	140126103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346725)	promoter-TSS (NM_001346725)	-54.0	NM_001346725	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	33.18	45.62	75.85	43.18	43.39	61.09	46.47	41.56	44.34
Merged-chr4-108118619-3	chr4	108118116	108119116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-69.0	NM_011327	20280.0	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	36.61	49.3	56.42	35.09	50.38	80.38	71.82	76.05	54.96
Merged-chr11-115078565-3	chr11	115078087	115079087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12844.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	131.0	92.62	61.05	48.58	41.99	33.76	39.08	30.95	16.24
Merged-chr11-8624221-3	chr11	8623746	8624746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	RLTR20A4|LTR|ERVK	40289.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	115.55	63.13	60.12	119.43	65.31	55.46	63.37	40.24	13.74
Merged-chr4-126256472-3	chr4	126255966	126256966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-147.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	299.18	253.89	288.59	250.32	144.62	198.54	257.71	225.51	209.84
Merged-chr9-120058840-3	chr9	120058339	120059339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	9457.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	52.63	43.77	36.07	60.05	34.99	51.44	31.69	26.53	21.86
Merged-chr2-146512200-3	chr2	146511714	146512714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-210.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	32.61	23.04	22.2	42.51	33.59	40.99	60.2	49.52	34.35
Merged-chr14-33203950-3	chr14	33203446	33204446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-12877.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	32.61	21.2	11.1	59.38	39.65	23.31	10.56	14.59	11.87
Merged-chr4-116821658-3	chr4	116821167	116822167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146256)	promoter-TSS (NM_146256)	-159.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	18.31	11.06	18.5	15.52	7.93	11.25	15.84	5.31	8.12
Merged-chr12-108766298-1	chr12	108765798	108766798	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27013.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	154.45	163.58	185.92	130.9	161.88	163.97	154.2	180.85	126.78
Merged-chr16-91358628-1	chr16	91358128	91359128	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14155.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	9.72	4.15	0.0	9.45	8.4	3.22	121.46	137.96	36.22
Merged-chr16-59471868-3	chr16	59471362	59472362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025910)	promoter-TSS (NM_025910)	87.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	66.93	57.14	27.75	89.06	59.25	48.23	117.24	103.91	43.09
Merged-chr13-23684077-3	chr13	23683592	23684592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	-107.0	NM_001290380	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	162.46	161.27	75.85	151.14	126.89	170.4	124.63	114.52	83.69
Merged-chr7-98427356-3	chr7	98426862	98427862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13054.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	18.88	14.75	11.1	11.47	8.86	5.63	13.73	4.42	7.49
Merged-chr2-157566227-3	chr2	157565742	157566742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355426, exon 1 of 2)	5' UTR (NM_001355426, exon 1 of 2)	119.0	NM_001355426	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	466.22	413.32	277.49	581.61	520.62	430.83	519.64	604.44	252.93
Merged-chr11-29864476-3	chr11	29863962	29864962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	Lx7|LINE|L1	-38794.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	17.16	10.6	22.2	13.49	5.13	24.11	19.01	10.61	16.24
Merged-chr2-129594381-1	chr2	129593881	129594881	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291022, intron 1 of 4)	intron (NM_001291022, intron 1 of 4)	-1081.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	410.73	539.58	345.93	392.69	361.54	336.79	411.91	550.94	317.88
Merged-chr9-24503192-4	chr9	24502674	24503674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172920)	promoter-TSS (NM_172920)	-34.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	62.35	40.55	62.9	65.45	48.98	61.89	74.99	46.43	34.35
Merged-chr10-80798525-3	chr10	80797996	80798996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	130.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	680.17	523.91	403.28	590.38	534.62	401.09	473.17	501.86	285.41
Merged-chr15-3995939-3	chr15	3995422	3996422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145930)	promoter-TSS (NM_145930)	-117.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	314.63	309.19	205.34	302.95	306.03	260.43	288.34	340.47	196.1
Merged-chr4-59177754-3	chr4	59177258	59178258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11792.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	28.6	20.27	14.8	44.53	21.46	31.35	47.53	47.31	36.85
Merged-chr10-128411613-3	chr10	128411104	128412104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104288)	promoter-TSS (NR_104288)	-12.0	NR_104288	67588.0	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	207.08	174.64	161.87	164.63	143.22	142.27	181.66	181.73	113.66
Merged-chr9-61013135-5	chr9	61012635	61013635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3934.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	38.9	26.26	18.5	26.31	30.79	24.11	40.14	44.22	21.86
Merged-chr17-71263378-3	chr17	71262898	71263898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	47613.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	95.53	76.49	47.17	108.63	107.76	64.3	47.53	31.39	9.99
Merged-chr3-104523775-3	chr3	104523267	104524267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11849.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	86.95	68.2	37.92	127.52	110.1	53.05	44.36	36.7	25.61
Merged-chr8-20297540-3	chr8	20297044	20298044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030708)	promoter-TSS (NR_030708)	-112.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	62.93	48.84	21.27	59.38	42.45	48.23	41.19	30.51	29.35
Merged-chr17-55712644-3	chr17	55712156	55713156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028370)	promoter-TSS (NM_028370)	-20.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	56.06	44.24	56.42	77.59	45.25	73.95	64.43	64.11	48.71
Merged-chr15-100495297-3	chr15	100494792	100495792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153407)	promoter-TSS (NM_153407)	-53.0	NM_153407	207785.0	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	71.51	41.93	42.55	53.3	42.92	33.76	80.27	57.04	37.47
Merged-chr6-29272568-3	chr6	29272063	29273063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023516)	promoter-TSS (NM_023516)	-63.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	218.52	163.58	127.64	240.2	165.14	151.11	216.52	206.93	68.7
Merged-chr17-51220095-3	chr17	51219592	51220592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40740.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	110.98	140.08	65.67	97.16	114.29	94.85	164.76	202.95	93.68
Merged-chr16-22119112-4	chr16	22118680	22119680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	44119.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	407.87	415.63	247.89	424.4	467.91	256.41	433.04	583.22	230.45
Merged-chr1-130717509-3	chr1	130717002	130718002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178691, exon 1 of 2)	exon (NM_178691, exon 1 of 2)	175.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	153.88	166.34	101.74	130.9	148.35	147.9	158.43	163.6	59.95
Merged-chr11-109365034-3	chr11	109364519	109365519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1365.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	204.22	208.27	125.79	206.46	216.93	117.35	277.78	275.91	112.42
Merged-chr9-100440446-4	chr9	100439944	100440944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46029.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	69.79	67.27	79.55	99.18	60.65	53.05	45.42	18.57	26.85
Merged-chr13-103897792-3	chr13	103897296	103898296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	22790.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	24.6	27.19	15.72	23.62	14.46	32.96	25.35	18.57	23.73
Merged-chr8-105701602-3	chr8	105701104	105702104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348349)	promoter-TSS (NM_001348349)	-43.0	NM_001047435	56513.0	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	193.93	219.79	161.87	138.32	159.08	113.33	155.26	221.97	113.04
Merged-chr2-144213973-3	chr2	144213470	144214470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-24680.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	107.55	87.09	61.05	98.51	63.45	88.42	95.06	113.19	43.72
Merged-chr9-66599792-3	chr9	66599301	66600301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6686.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	77.23	89.85	32.37	55.33	38.25	40.99	47.53	61.46	53.08
Merged-chr7-29238238-3	chr7	29237739	29238739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	-84.0	NM_001110201	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	104.11	110.59	77.7	118.08	82.57	94.85	235.53	238.33	124.91
Merged-chr18-60807433-3	chr18	60806928	60807928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	3579.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	127.57	93.08	124.87	45.21	34.06	46.62	132.02	105.24	104.92
Merged-chr4-129508113-3	chr4	129507600	129508600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5481.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	85.81	59.9	53.65	54.65	31.72	60.28	63.37	41.56	25.61
Merged-chr3-154584525-3	chr3	154584006	154585006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168358, intron 4 of 4)	intron (NM_001168358, intron 4 of 4)	-12205.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	53.77	41.93	37.0	61.4	54.11	48.23	52.81	44.22	33.72
Merged-chr11-97555456-3	chr11	97554961	97555961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	19665.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	51.48	39.63	41.62	48.58	27.52	39.39	58.09	63.67	26.85
Merged-chr7-16820549-3	chr7	16820043	16821043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039878, intron 1 of 17)	intron (NM_001039878, intron 1 of 17)	-3811.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	12.01	10.14	11.1	10.12	6.06	12.06	7.39	5.31	12.49
Merged-chr4-63562037-3	chr4	63561554	63562554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	1827.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	83.52	93.08	95.27	101.88	74.17	98.06	153.15	135.3	70.57
Merged-chr8-70616853-3	chr8	70616363	70617363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153074)	promoter-TSS (NM_153074)	19.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	353.53	235.0	194.24	300.92	190.34	181.66	383.4	359.92	177.99
Merged-chr19-34599482-3	chr19	34598977	34599977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110517)	promoter-TSS (NM_001110517)	-50.0	NM_001110517	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	17.16	24.88	16.65	11.47	16.79	16.08	30.63	46.43	38.72
Merged-chr18-5990090-3	chr18	5989599	5990599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145999.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	52.63	56.22	65.67	43.86	56.91	53.85	50.7	50.85	18.74
Merged-chr12-85304916-3	chr12	85304410	85305410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145138, intron 20 of 21)	intron (NM_145138, intron 20 of 21)	16319.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	97.82	101.83	102.67	101.21	96.57	66.71	94.0	141.94	71.2
Merged-chr2-25372262-3	chr2	25371780	25372780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290407, exon 1 of 6)	5' UTR (NM_001290407, exon 1 of 6)	245.0	NM_001081085	72080.0	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	11.44	6.45	3.7	3.37	11.2	8.04	11.62	11.05	2.5
Merged-chr16-51921272-3	chr16	51920778	51921778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	66009.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	17.73	21.2	19.42	15.52	19.13	28.13	20.07	17.69	14.99
Merged-chr6-39120309-3	chr6	39119770	39120770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045813, intron 1 of 3)	RMER16|LTR|ERVK	1797.0	NR_045813	75379.0	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	34.9	48.84	49.95	80.29	44.78	59.48	61.26	47.75	41.84
Merged-chr1-93801998-3	chr1	93801510	93802510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023136)	promoter-TSS (NM_023136)	-76.0	NM_001105667	21915.0	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	111.55	132.71	90.65	95.81	119.89	135.84	99.28	123.81	100.55
Merged-chr10-8772640-3	chr10	8772143	8773143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	113427.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	46.91	38.25	45.32	42.51	34.99	26.53	46.47	26.97	39.97
Merged-chr6-50566605-3	chr6	50566088	50567088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015581)	promoter-TSS (NR_015581)	-55.0	NR_027892	73183.0	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	229.97	212.88	171.12	192.97	209.93	188.89	246.09	195.0	136.77
Merged-chr5-143758270-3	chr5	143757769	143758769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015486)	promoter-TSS (NR_015486)	-85.0	NR_015486	320064.0	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	14.87	11.52	20.35	14.84	10.73	19.29	25.35	20.34	13.74
Merged-chr2-148536799-3	chr2	148536303	148537303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93268.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	7.44	2.76	14.8	15.52	7.46	5.63	10.56	6.63	11.24
Merged-chr2-85037163-3	chr2	85036666	85037666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136081)	promoter-TSS (NM_001136081)	46.0	NM_182990	20833.0	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	167.61	184.77	133.19	145.74	136.69	95.65	168.99	160.06	88.06
Merged-chr3-96670182-3	chr3	96669664	96670664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081139)	promoter-TSS (NM_001081139)	33.0	NM_001356540	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	5.72	4.15	10.17	3.37	4.67	3.22	7.39	2.65	0.0
Merged-chr11-22859764-3	chr11	22859237	22860237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016888)	promoter-TSS (NM_016888)	-2.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	220.24	209.66	226.61	254.37	199.67	241.94	215.46	222.41	126.78
Merged-chr7-120835087-3	chr7	120834593	120835593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7738.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	76.66	75.11	87.87	95.14	78.84	82.79	125.69	162.28	96.8
Merged-chr9-107340533-3	chr9	107340013	107341013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175486)	promoter-TSS (NM_175486)	-127.0	NM_175486	235599.0	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	25.74	15.21	13.87	45.21	20.99	21.7	19.01	11.5	2.5
Merged-chrX-73967278-3	chrX	73966720	73967720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008224)	promoter-TSS (NM_008224)	-863.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	309.48	290.75	169.27	264.49	258.91	192.11	278.83	311.29	161.13
Merged-chr19-4121190-3	chr19	4120703	4121703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016666, intron 2 of 6)	intron (NM_016666, intron 2 of 6)	372.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	107.55	80.64	87.87	99.18	74.64	85.2	84.49	87.11	56.21
Merged-chr10-8912373-3	chr10	8911830	8912830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26260.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	98.39	93.54	85.1	97.83	50.85	89.22	100.34	99.49	75.57
Merged-chr14-25527518-2	chr14	25527013	25528013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-6926.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	7.44	5.07	2.77	14.84	5.13	14.47	4.22	2.65	1.87
Merged-chr5-104046818-3	chr5	104046314	104047314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028794)	promoter-TSS (NM_028794)	-50.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	242.55	217.03	156.32	218.61	182.4	208.98	258.77	251.15	136.77
Merged-chr18-75363439-3	chr18	75362936	75363936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155535, intron 6 of 6)	intron (NR_155535, intron 6 of 6)	3652.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	17.73	12.9	9.25	16.87	18.19	16.08	27.46	15.03	14.99
Merged-chr7-45460996-3	chr7	45460483	45461483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007527)	TTS (NM_007527)	-1097.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	296.9	346.05	246.04	336.01	347.08	272.48	306.29	353.73	237.95
Merged-chr2-133495646-3	chr2	133495151	133496151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56508.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	80.09	77.41	61.97	89.06	61.58	92.44	70.76	90.2	49.34
Merged-chr8-69395560-3	chr8	69395086	69396086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038043)	promoter-TSS (NR_038043)	-42.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	57.78	65.89	49.95	60.72	73.71	53.85	79.21	51.73	37.47
Merged-chr3-96629886-3	chr3	96629392	96630392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025875)	promoter-TSS (NM_025875)	-36.0	NM_025875	60365.0	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	111.55	111.51	66.6	84.34	83.51	80.38	109.84	109.66	46.22
Merged-chr17-17581426-3	chr17	17580907	17581907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	43082.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	92.1	119.8	61.05	97.16	58.31	84.4	60.2	53.06	46.22
Merged-chr8-95332076-5	chr8	95331565	95332565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024467)	promoter-TSS (NM_024467)	-115.0	NM_024467	79233.0	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	338.66	329.0	270.09	334.66	294.37	316.69	309.46	319.24	224.83
Merged-chr10-77606578-3	chr10	77606069	77607069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301671)	promoter-TSS (NM_001301671)	-29.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	413.59	327.16	249.74	416.3	376.94	262.04	347.48	351.52	182.99
Merged-chr9-116083741-3	chr9	116083239	116084239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91624.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	144.16	171.41	109.14	121.45	163.74	169.6	127.8	164.04	80.56
Merged-chr13-75794368-3	chr13	75793865	75794865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45520.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	16.02	14.28	14.8	27.66	27.52	25.72	34.85	17.69	33.1
Merged-chr9-124282228-3	chr9	124281774	124282774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30420.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	30.32	38.25	55.5	47.23	47.58	63.5	66.54	49.08	45.59
Merged-chr7-100461800-3	chr7	100461290	100462290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-11201.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	189.35	152.98	146.14	190.27	131.09	193.71	125.69	120.71	114.91
Merged-chr7-80340299-3	chr7	80339815	80340815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-96.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	53.77	49.76	35.15	53.3	30.79	47.42	59.15	34.49	43.09
Merged-chr8-126594656-3	chr8	126594156	126595156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-14677	-1220.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	325.5	323.47	180.37	398.76	351.28	262.04	317.91	371.42	204.22
Merged-chr6-116672564-3	chr6	116672053	116673053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	1283.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	153.31	97.23	87.87	165.31	61.11	106.1	162.65	110.1	97.43
Merged-chr18-82462197-3	chr18	82461736	82462736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-12887.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.0	2.3	3.7	6.75	0.47	6.43	2.11	0.0	9.99
Merged-chr11-116020140-3	chr11	116019669	116020669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4335.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	35.47	18.89	13.87	51.28	26.12	19.29	17.96	14.59	15.61
Merged-chr12-12278662-3	chr12	12278169	12279169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	16530.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	228.82	236.38	113.77	251.67	213.19	154.33	222.86	220.2	126.78
Merged-chr1-33900330-3	chr1	33899841	33900841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	7280.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	112.12	84.32	61.97	57.35	35.45	36.97	32.74	31.84	19.36
Merged-chr9-96364495-3	chr9	96364004	96365004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007502)	promoter-TSS (NM_007502)	-73.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	277.45	216.11	158.17	251.67	207.6	175.23	238.7	208.26	125.53
Merged-chr19-9936751-3	chr19	9936250	9937250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37217.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	130.43	90.31	63.82	226.03	178.21	112.53	130.97	123.36	42.47
Merged-chr9-32562643-3	chr9	32562139	32563139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21187.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	29.75	21.66	25.9	26.31	11.66	15.27	24.29	9.29	11.87
Merged-chr13-100744203-3	chr13	100743694	100744694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025369, intron 1 of 3)	CpG	465.0	NM_001190264	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	211.66	235.0	184.99	209.84	245.38	182.46	222.86	295.37	106.79
Merged-chr6-24707304-1	chr6	24706804	24707804	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25941.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	20.02	28.57	4.62	60.72	62.51	36.97	14.79	14.59	5.62
Merged-chr13-19394328-3	chr13	19393823	19394823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	1490.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	23.45	43.77	27.75	14.17	19.59	21.7	33.8	37.58	28.73
Merged-chr4-63389920-3	chr4	63389430	63390430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8310.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	142.44	119.8	141.52	142.37	102.17	105.3	151.03	144.59	83.69
Merged-chr19-3768889-3	chr19	3768381	3769381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167889, intron 2 of 10)	CpG-7172	1460.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	222.53	211.04	189.62	190.27	168.41	165.58	191.17	213.12	126.15
Merged-chr3-88143270-3	chr3	88142767	88143767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	895.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	279.73	264.03	228.46	249.65	262.18	215.42	273.55	270.61	171.12
Merged-chr11-114229964-2	chr11	114229482	114230482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	31724.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	9.15	7.83	3.7	58.7	41.99	21.7	103.51	119.83	48.71
Merged-chr7-45525552-3	chr7	45525082	45526082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148927)	promoter-TSS (NM_148927)	686.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	435.33	441.43	323.73	466.23	421.26	362.51	386.56	453.66	256.68
Merged-chr7-25681049-2	chr7	25680542	25681542	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172148)	promoter-TSS (NM_172148)	-116.0	NM_172148	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	258.57	259.42	165.57	258.42	195.93	176.03	201.73	264.86	152.38
Merged-chr11-69396116-3	chr11	69395628	69396628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045525)	promoter-TSS (NM_001045525)	337.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	259.71	195.37	148.92	205.79	131.09	188.89	208.07	222.41	146.14
Merged-chr11-60417172-3	chr11	60416686	60417686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145427)	promoter-TSS (NM_145427)	41.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	152.17	107.36	74.0	163.96	120.36	126.19	182.72	130.44	55.58
Merged-chr14-31183821-3	chr14	31183320	31184320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347583, exon 14 of 14)	3' UTR (NM_001347583, exon 14 of 14)	-15179.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	108.69	118.42	113.77	98.51	90.04	192.91	135.19	114.96	106.17
Merged-chr14-20298309-3	chr14	20297806	20298806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359869, intron 3 of 9)	intron (NM_001359869, intron 3 of 9)	3616.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	29.17	43.31	29.6	35.76	52.72	39.39	73.93	86.22	28.73
Merged-chr14-64949965-3	chr14	64949469	64950469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253731)	promoter-TSS (NM_001253731)	-76.0	NM_153414	210925.0	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	56.06	54.37	42.55	34.41	41.99	42.6	46.47	29.18	41.22
Merged-chr11-120727362-3	chr11	120726865	120727865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347608)	promoter-TSS (NM_001347608)	-81.0	NM_001347608	67880.0	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	16.59	13.36	16.65	14.84	14.93	31.35	26.4	19.9	8.12
Merged-chr7-141016974-3	chr7	141016506	141017506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033632)	promoter-TSS (NM_001033632)	-114.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	82.95	102.75	89.72	109.3	74.64	89.22	121.46	117.17	85.56
Merged-chr6-134073130-3	chr6	134072632	134073632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	37432.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	233.97	202.75	139.67	209.16	196.87	151.92	146.81	167.58	89.93
Merged-chr1-91043601-3	chr1	91043116	91044116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-9828.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	51.48	51.61	62.9	41.16	26.59	30.54	42.25	33.16	30.6
Merged-chr1-58720216-3	chr1	58719713	58720713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	6927.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	52.06	66.81	55.5	78.94	61.58	98.06	70.76	79.15	52.46
Merged-chr19-3908080-3	chr19	3907602	3908602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136091)	promoter-TSS (NM_001136091)	-969.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	308.91	291.68	198.87	319.14	259.38	187.28	305.24	363.02	154.26
Merged-chr4-151996316-3	chr4	151995815	151996815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-136.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	225.96	179.25	202.56	233.45	146.48	196.12	255.6	170.23	106.79
Merged-chr5-64503673-3	chr5	64503165	64504165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	26657.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	24.6	23.04	22.2	22.94	14.46	22.51	30.63	23.88	11.24
Merged-chr3-122301527-3	chr3	122301033	122302033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-7830.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	35.47	45.62	32.37	51.28	62.98	80.38	26.4	23.43	23.73
Merged-chr10-41473911-3	chr10	41473413	41474413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_001164433	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	34.9	33.64	17.57	26.99	22.39	26.53	22.18	43.33	21.23
Merged-chr18-23997056-3	chr18	23996554	23997554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011755, intron 2 of 2)	intron (NM_011755, intron 2 of 2)	7420.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	33.75	20.27	21.27	14.84	14.46	20.9	20.07	14.59	18.11
Merged-chr15-58034165-5	chr15	58033664	58034664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029418, exon 1 of 6)	exon (NM_029418, exon 1 of 6)	130.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	124.71	124.41	99.89	126.85	133.89	127.0	107.73	125.13	84.31
Merged-chr12-38788782-3	chr12	38788279	38789279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	5068.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	48.05	45.16	17.57	76.92	48.98	43.4	46.47	44.66	24.98
Merged-chr2-61583122-3	chr2	61582597	61583597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	L1M4|LINE|L1	4511.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	109.83	127.18	86.02	118.75	90.5	114.14	114.07	121.6	100.55
Merged-chrX-48623716-3	chrX	48623220	48624220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290705)	promoter-TSS (NM_001290705)	46.0	NM_001290705	20523.0	Mm.34953	NM_011398	ENSMUSG00000031105	Slc25a14	BMCP1|UCP5|UCP5L|UCP5S	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding	20.59	26.73	14.8	31.71	21.46	8.84	21.12	18.57	12.49
Merged-chr9-56419082-3	chr9	56418595	56419595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	476.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	296.9	378.3	160.94	275.96	276.64	181.66	293.62	372.75	108.67
Merged-chr18-12236450-3	chr18	12235945	12236945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008720)	promoter-TSS (NM_008720)	-59.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	135.0	187.08	145.22	140.34	144.15	132.63	162.65	213.12	89.31
Merged-chr16-90177655-3	chr16	90177167	90178167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35430.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	6.29	1.84	6.47	4.72	2.33	4.82	10.56	6.19	2.5
Merged-chr5-142906745-3	chr5	142906265	142907265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-11.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	170.47	157.13	155.39	147.09	119.89	127.0	198.56	197.65	140.52
Merged-chr11-106256161-3	chr11	106255653	106256653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	-32.0	NM_008950	19184.0	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	134.43	91.24	93.42	109.3	73.24	98.06	126.74	106.12	52.46
Merged-chr10-39261345-3	chr10	39260846	39261846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97552.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	31.46	26.73	19.42	27.66	25.19	23.31	12.67	11.05	12.49
Merged-chr8-40511322-3	chr8	40510831	40511831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033560)	promoter-TSS (NM_033560)	423.0	NM_001271543	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	452.49	305.96	260.84	350.18	280.84	187.28	321.08	248.06	123.66
Merged-chr4-8912885-3	chr4	8912399	8913399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161575.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	216.24	287.07	193.32	171.38	220.66	176.03	239.75	386.45	207.97
Merged-chr16-62857710-3	chr16	62857211	62858211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	3404.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	44.05	51.15	30.52	29.01	35.92	36.97	53.87	54.39	53.71
Merged-chr8-88696879-3	chr8	88696360	88697360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173369)	promoter-TSS (NM_173369)	-168.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	209.94	242.37	201.64	191.62	177.74	144.68	207.01	197.65	128.65
Merged-chr2-124711225-3	chr2	124710723	124711723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57642.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	132.14	151.6	93.42	107.28	110.56	130.21	176.38	173.77	93.68
Merged-chr3-90265118-3	chr3	90264611	90265611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356483)	promoter-TSS (NM_001356483)	-124.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	355.82	251.13	215.51	295.53	206.2	171.21	264.05	244.96	155.51
Merged-chr15-41760229-1	chr15	41759729	41760729	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	Lx4A|LINE|L1	-28766.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	1.72	2.76	0.0	12.14	0.0	3.22	3.17	1.33	5.0
Merged-chr18-80151746-3	chr18	80151220	80152220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-238.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	307.19	246.98	227.54	314.42	251.45	176.83	280.95	189.69	138.65
Merged-chr11-101095468-3	chr11	101094986	101095986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008949)	promoter-TSS (NM_008949)	-51.0	NM_008949	19183.0	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	54.92	60.82	97.12	62.07	74.17	97.26	76.05	93.74	69.32
Merged-chr11-120617922-3	chr11	120617390	120618390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347615)	promoter-TSS (NM_001347615)	0.0	NM_024229	68671.0	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	115.55	85.25	78.62	118.08	105.43	73.95	100.34	84.45	41.22
Merged-chrX-21062087-3	chrX	21061590	21062590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111076)	promoter-TSS (NM_001111076)	-52.0	NM_001111076	319535.0	Mm.170163	NM_001013387	ENSMUSG00000054737	Zfp182	6330583I20Rik|Znf182	zinc finger protein 182	protein-coding	31.46	41.93	24.05	34.41	46.65	39.39	59.15	61.9	25.61
Merged-chr7-35555418-3	chr7	35554897	35555897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033080, exon 1 of 3)	exon (NM_033080, exon 1 of 3)	531.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	276.3	297.67	253.44	311.04	375.54	239.53	341.15	319.24	184.86
Merged-chr11-16932320-3	chr11	16931820	16932820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18962.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	6.86	9.68	12.95	7.42	6.53	3.22	6.34	9.29	7.49
Merged-chr1-105990406-3	chr1	105989923	105990923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122676)	promoter-TSS (NM_001122676)	17.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	219.1	206.43	172.97	255.72	214.59	192.91	185.89	174.21	113.66
Merged-chr7-55868464-3	chr7	55867971	55868971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	26400.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	49.2	51.61	32.37	96.48	101.7	90.02	103.51	129.11	76.82
Merged-chr7-6363229-1	chr7	6362729	6363729	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025163)	promoter-TSS (NM_001025163)	-79.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	28.6	19.35	29.6	28.34	17.73	43.4	29.57	25.65	20.61
Merged-chr10-111159953-3	chr10	111159458	111160458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-4844.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	141.87	116.58	107.29	115.38	79.31	90.83	55.98	45.99	36.22
Merged-chr15-82899775-3	chr15	82899280	82900280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045068, intron 1 of 3)	CpG	700.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	100.11	77.87	88.8	89.74	61.58	82.79	107.73	52.62	55.58
Merged-chr11-69991578-3	chr11	69991078	69992078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026017)	TTS (NM_026017)	208.0	NM_019749	56486.0	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	355.82	304.12	213.66	329.26	275.71	237.12	316.86	379.38	191.11
Merged-chr7-140115766-3	chr7	140115254	140116254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053119, intron 1 of 7)	intron (NM_053119, intron 1 of 7)	669.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	51.48	49.76	86.95	45.88	58.78	57.87	79.21	92.41	38.72
Merged-chr14-45667366-3	chr14	45666881	45667881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9238.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	185.92	220.25	66.6	205.79	192.67	134.23	196.45	327.2	106.17
Merged-chr8-26978076-3	chr8	26977587	26978587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101502, intron 1 of 1)	CpG	751.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	139.58	165.42	182.22	149.11	137.62	183.26	167.93	168.91	175.49
Merged-chrUn_JH584304-27208-1	chrUn_JH584304	26708	27708	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32481.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	182.72	128.67	0.0
Merged-chr9-66347561-3	chr9	66347065	66348065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2885.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	94.39	138.7	72.15	87.04	90.04	81.99	107.73	155.2	91.18
Merged-chr3-65950456-3	chr3	65949957	65950957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	7792.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	53.77	77.87	53.65	69.5	52.25	56.27	77.1	74.73	46.84
Merged-chr17-34644721-3	chr17	34644236	34645236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019873)	promoter-TSS (NM_019873)	-147.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	93.82	112.43	60.12	76.92	65.78	61.09	74.99	86.66	62.45
Merged-chr2-62656263-3	chr2	62655769	62656769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-8058.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	16.02	14.28	11.1	20.24	15.86	11.25	21.12	21.67	25.61
Merged-chr17-24169038-3	chr17	24168492	24169492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	-183.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	496.54	468.62	420.85	479.72	457.18	425.2	463.67	603.12	344.11
Merged-chr11-97987775-3	chr11	97987262	97988262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	217.38	178.78	117.47	282.03	225.79	167.99	233.42	290.95	100.55
Merged-chr1-131287051-3	chr1	131286563	131287563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7500.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	20.02	18.89	25.9	29.01	13.06	24.92	24.29	17.24	21.86
Merged-chr10-85367099-1	chr10	85366599	85367599	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-19715.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	2.29	1.38	1.85	2.02	3.73	4.82	15.84	6.19	3.12
Merged-chr10-40125370-3	chr10	40124874	40125874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	16880.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	122.99	131.32	69.37	159.91	110.1	110.92	118.29	167.58	64.33
Merged-chr11-116138928-3	chr11	116138426	116139426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	-58.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	93.24	63.59	47.17	78.27	67.18	54.66	57.03	60.13	28.73
Merged-chr16-31838275-4	chr16	31837824	31838824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 13 of 22)	L1MA9|LINE|L1	-40486.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	389.57	288.45	169.27	299.57	197.8	136.64	249.26	278.12	80.56
Merged-chr7-4943420-3	chr7	4942899	4943899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 13 of 13)	intron (NM_173008, intron 13 of 13)	17555.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	12.59	15.21	16.65	6.75	10.26	8.04	14.79	9.73	1.25
Merged-chr11-51606067-3	chr11	51605573	51606573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048061, intron 2 of 7)	CpG	808.0	NM_001048061	15384.0	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	382.7	294.9	296.91	360.3	309.76	303.83	290.45	218.87	178.61
Merged-chr11-115199364-2	chr11	115198866	115199866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 3 of 9)	intron (NM_001033393, intron 3 of 9)	11879.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	196.21	217.03	133.19	49.25	43.39	69.13	175.33	228.6	111.79
Merged-chr5-145114277-3	chr5	145113777	145114777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023142)	promoter-TSS (NM_023142)	21.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	209.94	161.74	168.34	191.62	170.74	208.98	171.1	179.52	107.42
Merged-chr3-88102894-3	chr3	88102386	88103386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033484, intron 19 of 37)	intron (NM_001033484, intron 19 of 37)	20835.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	131.57	70.04	40.7	133.59	118.49	100.47	90.83	74.73	50.59
Merged-chr16-11460965-1	chr16	11460465	11461465	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	55317.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	126.42	123.95	53.65	201.74	179.61	185.68	127.8	149.89	74.94
Merged-chr2-145832061-3	chr2	145831582	145832582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	45966.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	239.69	202.28	145.22	232.1	185.2	155.93	170.05	214.01	110.54
Merged-chr1-87658208-3	chr1	87657700	87658700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	37888.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	72.08	65.89	92.5	69.5	40.59	40.99	72.88	68.54	59.95
Merged-chr11-61494408-3	chr11	61493906	61494906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291035)	promoter-TSS (NM_001291035)	-140.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	135.58	102.29	111.92	161.93	148.35	116.55	157.37	149.89	59.95
Merged-chr2-116971839-2	chr2	116971345	116972345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71693.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	181.91	131.78	104.52	165.98	84.44	87.61	138.36	136.63	101.8
Merged-chr9-72438476-3	chr9	72437969	72438969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008613)	promoter-TSS (NM_008613)	-60.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	2.86	0.92	0.0	2.02	5.13	11.25	3.17	1.77	3.75
Merged-chr1-36129348-3	chr1	36128853	36129853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14960.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	78.94	71.42	49.95	175.43	168.41	157.54	164.76	220.2	84.31
Merged-chr14-30715606-3	chr14	30715143	30716143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	28.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	174.48	116.58	91.57	226.71	140.42	92.44	172.16	98.16	78.07
Merged-chr1-184441393-3	chr1	184440904	184441904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116287.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	20.59	17.97	4.62	30.36	11.2	12.06	11.62	10.17	0.0
Merged-chr10-12867010-3	chr10	12866501	12867501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5266.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	80.09	51.15	32.37	62.75	44.32	49.03	57.03	76.05	38.1
Merged-chr1-34485920-3	chr1	34485377	34486377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12535.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	72.08	102.75	77.7	157.88	141.82	139.06	155.26	215.34	121.16
Merged-chr1-127278527-1	chr1	127278027	127279027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73541.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	12.59	16.59	20.35	20.92	21.93	28.94	32.74	17.24	22.48
Merged-chr16-57223167-3	chr16	57222654	57223654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	8312.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	86.38	79.72	31.45	93.79	45.25	43.4	106.67	123.36	59.95
Merged-chr6-100110191-3	chr6	100109683	100110683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177175.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	12.59	10.14	12.02	11.47	8.4	14.47	8.45	5.75	9.99
Merged-chr3-76025721-1	chr3	76025221	76026221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48840.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	1.72	4.15	0.0	0.0	5.6	2.41	3.17	11.05	4.37
Merged-chr5-73490901-3	chr5	73490402	73491402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190733)	promoter-TSS (NM_001190733)	-124.0	NM_001190733	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	27.46	35.94	31.45	34.41	19.13	14.47	33.8	38.47	21.86
Merged-chr1-84302996-3	chr1	84302502	84303502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18357.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	6.86	11.52	7.4	14.84	12.13	13.66	13.73	14.59	39.97
Merged-chr6-17637781-1	chr6	17637281	17638281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	771.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	153.88	126.72	106.37	180.82	79.31	81.18	208.07	131.32	128.03
Merged-chr8-88697579-2	chr8	88697072	88698072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128170, intron 1 of 17)	intron (NM_001128170, intron 1 of 17)	544.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	312.34	361.25	301.53	255.72	284.57	197.73	295.73	374.96	198.6
Merged-chr15-83031077-3	chr15	83030569	83031569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	-1119.0	NM_001271413	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	9.72	33.64	34.22	29.69	15.86	43.4	31.69	32.28	27.48
Merged-chr10-68239241-1	chr10	68238741	68239741	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	39485.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	266.0	213.8	135.97	221.98	174.94	214.61	305.24	372.75	152.38
Merged-chr4-63496087-3	chr4	63495590	63496590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028640)	promoter-TSS (NM_028640)	-99.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	25.74	20.74	12.95	10.12	5.6	1.61	16.9	7.07	5.0
Merged-chr17-75551965-3	chr17	75551472	75552472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133747)	promoter-TSS (NM_133747)	-26.0	NM_001357860	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	98.97	81.56	61.97	65.45	76.04	64.3	105.62	80.92	48.71
Merged-chr4-41361236-3	chr4	41360723	41361723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	9260.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	65.79	76.95	47.17	63.42	50.85	60.28	61.26	51.73	31.23
Merged-chr7-25651462-3	chr7	25650961	25651961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	7300.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	61.21	60.36	67.52	60.05	40.59	68.32	49.64	55.71	29.98
Merged-chr10-80509793-3	chr10	80509256	80510256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	14850.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	61.21	44.24	22.2	62.75	31.26	15.27	49.64	35.82	18.74
Merged-chr14-54442723-3	chr14	54442196	54443196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008608)	TTS (NM_008608)	11098.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	33.75	25.34	3.7	36.43	15.86	11.25	33.8	16.8	21.23
Merged-chr3-108797964-3	chr3	108797454	108798454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011504, intron 16 of 18)	intron (NM_011504, intron 16 of 18)	42548.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	64.07	60.82	32.37	39.81	34.52	42.6	59.15	52.18	33.72
Merged-chr7-29007964-2	chr7	29007436	29008436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	PB1D9|SINE|Alu	25082.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	201.36	271.4	184.99	222.66	223.92	242.74	42.25	67.65	26.85
Merged-chr1-52366522-1	chr1	52366022	52367022	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133290.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	2.29	2.76	1.85	9.45	14.46	13.66	4.22	1.33	6.25
Merged-chr19-4099995-3	chr19	4099496	4100496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-2.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	93.82	71.88	77.7	84.34	51.78	94.04	82.38	74.73	66.2
Merged-chr9-45405801-3	chr9	45405297	45406297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007503)	promoter-TSS (NM_007503)	-280.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	236.83	223.48	145.22	231.43	179.14	217.83	163.71	209.15	108.04
Merged-chr6-145306883-3	chr6	145306389	145307389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56337.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	398.15	344.21	162.79	379.87	371.34	228.28	262.99	205.17	141.77
Merged-chr9-7558374-3	chr9	7557877	7558877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008611)	promoter-TSS (NM_008611)	-52.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	11.44	10.6	7.4	15.52	7.0	7.23	8.45	4.86	2.5
Merged-chr3-75276710-3	chr3	75276171	75277171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6593.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	23.45	38.71	40.7	13.49	22.86	17.68	23.24	15.48	18.74
Merged-chr17-35673805-3	chr17	35673278	35674278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010364)	promoter-TSS (NM_010364)	-35.0	NM_010364	14885.0	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	33.75	48.84	10.17	32.39	25.66	31.35	25.35	25.65	9.37
Merged-chr5-118478388-3	chr5	118477887	118478887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82332.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	40.04	24.88	10.17	49.93	22.86	13.66	36.97	22.11	8.74
Merged-chr14-16244550-1	chr14	16244050	16245050	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359882, intron 1 of 3)	intron (NM_001359882, intron 1 of 3)	-1219.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	114.41	128.56	52.72	109.98	102.17	84.4	167.93	225.06	122.41
Merged-chr15-81083477-3	chr15	81082958	81083958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	21589.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	338.08	285.23	188.69	363.67	299.96	257.21	272.5	296.25	124.91
Merged-chr17-35135265-4	chr17	35134762	35135762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252468)	promoter-TSS (NM_001252468)	84.0	NM_057171	224727.0	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	482.24	351.58	292.29	429.8	321.42	242.74	386.56	412.98	215.46
Merged-chr9-56592868-3	chr9	56592362	56593362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42786.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	5.15	7.83	22.2	8.1	5.6	14.47	7.39	3.98	1.25
Merged-chr1-192093086-3	chr1	192092598	192093598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-499.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	35.47	35.94	33.3	39.13	33.59	40.99	30.63	36.7	14.99
Merged-chr7-96951528-3	chr7	96951042	96952042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153591)	promoter-TSS (NM_153591)	15.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	296.9	270.94	177.59	326.56	345.22	204.16	250.32	249.82	123.66
Merged-chr18-58536222-3	chr18	58535714	58536714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20026.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	32.04	41.93	34.22	43.86	55.05	60.28	24.29	45.99	31.85
Merged-chr6-117891625-3	chr6	117891123	117892123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8717.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	19.45	8.29	3.7	12.82	7.0	8.84	25.35	11.5	6.25
Merged-chrX-109108585-3	chrX	109108085	109109085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	13178.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	97.25	102.75	51.8	118.75	100.3	82.79	85.55	131.32	48.71
Merged-chr7-43608188-3	chr7	43607700	43608700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355131, intron 1 of 3)	intron (NM_001355131, intron 1 of 3)	1031.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	18.31	18.89	16.65	22.27	10.26	27.33	33.8	27.86	17.49
Merged-chr9-65676505-3	chr9	65676002	65677002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-46.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	65.21	39.17	54.57	63.42	40.12	46.62	74.99	66.77	21.86
Merged-chr3-105687618-3	chr3	105687117	105688117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017397)	promoter-TSS (NM_017397)	-46.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	191.07	143.76	71.22	131.57	132.02	109.32	109.84	112.75	66.2
Merged-chr3-106722178-3	chr3	106721684	106722684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028081, intron 1 of 2)	CpG	502.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	459.36	564.46	287.66	479.72	557.94	305.44	411.91	560.67	219.21
Merged-chr4-131910774-3	chr4	131910278	131911278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102393, intron 3 of 4)	RMER15-int|LTR|ERVL	9251.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	143.01	154.82	88.8	240.2	194.07	167.99	139.42	158.74	71.82
Merged-chr17-81065044-3	chr17	81064556	81065556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028138)	promoter-TSS (NM_028138)	29.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	102.4	94.92	54.57	118.08	127.82	85.2	122.52	121.6	48.09
Merged-chr7-19093997-3	chr7	19093485	19094485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011383)	promoter-TSS (NM_011383)	-559.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	70.93	87.55	89.72	58.7	55.05	78.77	63.37	76.94	64.95
Merged-chr18-37935578-3	chr18	37935086	37936086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305981)	promoter-TSS (NM_001305981)	-110.0	NM_001305980	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	86.38	100.91	81.4	58.7	92.84	76.36	76.05	84.45	61.2
Merged-chr18-62182497-3	chr18	62181987	62182987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2387.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	114.41	114.27	55.5	100.53	57.85	69.13	104.56	103.02	67.45
Merged-chr18-65697796-3	chr18	65697301	65698301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177028)	promoter-TSS (NM_177028)	-467.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	292.32	225.78	130.42	302.95	278.97	175.23	193.28	229.04	108.04
Merged-chr3-36000666-3	chr3	36000184	36001184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023644)	promoter-TSS (NM_023644)	-6.0	NM_023644	72039.0	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	50.34	63.59	70.3	78.94	84.9	76.36	88.72	78.26	47.46
Merged-chr5-112325414-3	chr5	112324913	112325913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018783)	promoter-TSS (NM_018783)	-956.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	342.66	265.41	202.56	400.11	332.62	230.69	334.81	374.52	134.9
Merged-chr11-97799626-3	chr11	97799147	97800147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	82.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	98.39	80.64	81.4	92.44	63.45	96.45	80.27	82.24	60.58
Merged-chr15-101173954-3	chr15	101173481	101174481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007395)	promoter-TSS (NM_007395)	-91.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	96.11	60.82	78.62	97.83	73.71	84.4	101.39	83.57	64.95
Merged-chr8-26978409-2	chr8	26977909	26978909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110508, intron 2 of 2)	CpG-13923	1073.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	127.0	159.43	160.02	118.75	120.83	166.38	147.87	144.59	140.52
Merged-chr14-75164062-3	chr14	75163576	75164576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	27651.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	243.69	297.21	172.04	263.81	279.91	230.69	231.3	336.93	168.62
Merged-chr2-52998135-3	chr2	52997639	52998639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	140271.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	121.28	122.11	65.67	127.52	85.84	94.85	98.23	99.49	68.7
Merged-chr19-21777281-3	chr19	21776802	21777802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1038.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	45.76	37.32	29.6	55.33	42.45	40.99	38.02	26.97	24.36
Merged-chr17-29095501-3	chr17	29095004	29096004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007669, intron 1 of 2)	CpG	1735.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	97.25	63.59	57.35	82.32	53.65	56.27	64.43	57.48	21.86
Merged-chr17-85019083-3	chr17	85018586	85019586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-9261.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	11.44	14.28	10.17	12.82	12.13	20.09	10.56	15.03	7.49
Merged-chr8-61584849-3	chr8	61584359	61585359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	L2a|LINE|L2	6310.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	56.63	69.58	30.52	48.58	25.19	28.13	28.52	22.11	18.74
Merged-chr2-160620235-5	chr2	160619729	160620729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25668.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	148.16	154.36	76.77	159.23	134.35	115.75	143.64	143.26	80.56
Merged-chr11-30772439-3	chr11	30771933	30772933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	CpG	658.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	255.14	287.07	261.76	258.42	266.38	269.27	237.64	221.97	171.12
Merged-chrX-142698332-3	chrX	142697841	142698841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	16615.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	69.22	73.73	37.0	62.75	56.91	41.8	55.98	70.75	50.59
Merged-chr2-160268107-3	chr2	160267622	160268622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59372.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	91.53	92.16	106.37	103.23	88.64	95.65	96.11	94.62	78.07
Merged-chr7-130533502-3	chr7	130532986	130533986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162855, intron 10 of 10)	intron (NM_001162855, intron 10 of 10)	-13117.0	NM_001271343	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	27.46	24.88	14.8	20.92	27.52	22.51	34.85	28.74	20.61
Merged-chr10-67608314-3	chr10	67607810	67608810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36351.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	21.17	5.07	4.62	15.52	6.53	9.65	12.67	11.5	9.37
Merged-chr2-84638654-3	chr2	84638155	84639155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	10825.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	60.64	74.65	29.6	77.59	48.98	39.39	65.48	60.13	44.34
Merged-chr10-67205102-3	chr10	67204594	67205594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	19344.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	163.61	165.42	103.59	161.26	147.42	146.29	166.88	155.64	95.55
Merged-chr2-32857821-3	chr2	32857333	32858333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10596.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	6.86	1.84	0.0	2.02	2.8	1.61	4.22	3.98	2.5
Merged-chr12-55421440-3	chr12	55420944	55421944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	22619.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	44.62	48.38	41.62	46.56	22.39	57.07	101.39	76.05	48.71
Merged-chr1-58725976-3	chr1	58725491	58726491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-4561.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	183.06	170.95	111.92	228.73	132.02	141.47	199.62	216.22	112.42
Merged-chr4-119125717-3	chr4	119125224	119126224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	16979.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	113.27	88.93	77.7	76.24	56.91	61.89	181.66	157.85	96.18
Merged-chr16-49792669-3	chr16	49792145	49793145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63009.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	49.77	31.33	22.2	43.18	33.59	31.35	43.3	20.34	18.74
Merged-chr5-90689951-3	chr5	90689449	90690449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49422.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	28.6	31.79	23.12	68.82	48.98	53.85	22.18	12.82	6.87
Merged-chr1-131087070-3	chr1	131086574	131087574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	10769.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	128.71	96.3	81.4	182.17	116.16	90.02	146.81	130.0	70.57
Merged-chr5-88509250-3	chr5	88508773	88509773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18624.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	126.42	118.42	79.55	82.99	62.05	73.95	103.51	113.64	73.07
Merged-chr16-23135973-3	chr16	23135470	23136470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-8240.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	41.76	35.48	36.07	44.53	40.59	67.52	74.99	58.81	31.23
Merged-chr14-34297159-3	chr14	34296654	34297654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153399, intron 2 of 11)	intron (NR_153399, intron 2 of 11)	13363.0	NR_153399	75698.0	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	32.04	88.47	54.57	32.39	53.18	49.03	45.42	53.94	41.84
Merged-chr9-75414488-1	chr9	75413988	75414988	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040719, intron 3 of 3)	intron (NR_040719, intron 3 of 3)	4304.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	1.72	4.15	1.85	2.02	3.27	4.82	12.67	12.82	5.62
Merged-chr6-17586949-1	chr6	17586449	17587449	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-50061.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.29	1.84	1.85	2.7	1.4	4.82	17.96	24.32	13.74
Merged-chr16-84606309-2	chr16	84605802	84606802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73487.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	6.29	11.98	11.1	3.37	1.4	4.02	7.39	9.73	5.0
Merged-chr3-55112139-3	chr3	55111671	55112671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144895)	promoter-TSS (NM_144895)	5.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	207.08	187.08	168.34	213.89	195.93	197.73	255.6	245.84	159.88
Merged-chr2-30415597-3	chr2	30415094	30416094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138748)	promoter-TSS (NM_138748)	154.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	288.32	203.21	182.22	266.51	202.0	209.79	223.91	222.85	147.39
Merged-chr4-102656730-3	chr4	102656233	102657233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66890.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	123.56	151.6	108.22	91.76	67.64	127.0	69.71	66.77	34.35
Merged-chr1-46853627-3	chr1	46853131	46854131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-13.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	352.96	301.81	295.06	326.56	274.77	230.69	277.78	259.55	184.86
Merged-chr2-52513026-3	chr2	52512518	52513518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	45593.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	121.85	120.73	95.27	76.92	63.91	69.93	60.2	66.33	59.33
Merged-chr10-80561596-5	chr10	80561106	80562106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025852)	promoter-TSS (NM_025852)	-46.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	197.36	203.67	123.02	213.21	175.87	123.78	226.02	176.42	99.92
Merged-chr10-44539083-3	chr10	44538594	44539594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80346.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	54.35	78.79	53.65	69.5	57.85	75.56	69.71	57.92	42.47
Merged-chr2-154597621-3	chr2	154597122	154598122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 1 of 3)	MTC|LTR|ERVL-MaLR	6051.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	27.46	17.51	24.05	33.06	18.19	24.92	25.35	39.35	32.48
Merged-chr5-141004439-4	chr5	141003922	141004922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3826.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	85.24	93.54	70.3	70.85	69.51	57.07	68.65	88.88	45.59
Merged-chr19-4300478-3	chr19	4300015	4301015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5707.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	81.23	76.03	86.02	77.59	65.78	107.71	98.23	89.32	87.43
Merged-chr18-3336903-1	chr18	3336403	3337403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_033457, exon 1 of 2)	non-coding (NR_033457, exon 1 of 2)	487.0	NR_033457	633947.0	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	442.77	532.21	381.08	470.28	458.58	346.43	439.37	401.93	262.3
Merged-chr1-23256786-3	chr1	23256289	23257289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15480.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	204.8	142.38	126.72	203.76	127.82	102.88	158.43	91.53	69.95
Merged-chrX-94366940-3	chrX	94366455	94367455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026673)	promoter-TSS (NM_026673)	-155.0	NM_026673	68316.0	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding	22.31	16.13	12.02	12.14	7.46	10.45	14.79	19.46	10.62
Merged-chr6-83914396-3	chr6	83913892	83914892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008717)	promoter-TSS (NM_008717)	39.0	NM_001355284	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	222.53	255.27	218.29	194.99	251.91	204.97	202.79	179.52	92.43
Merged-chr7-110061548-3	chr7	110061025	110062025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-177.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	306.62	382.45	243.26	298.23	329.35	211.4	276.72	318.36	198.6
Merged-chr6-28480183-3	chr6	28479687	28480687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019776)	promoter-TSS (NM_019776)	-161.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	180.77	150.68	144.29	139.67	120.36	118.16	158.43	147.68	79.32
Merged-chr2-25622040-3	chr2	25621531	25622531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109993)	promoter-TSS (NM_001109993)	-26.0	NM_001109993	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	240.26	240.07	205.34	258.42	238.85	246.76	240.81	273.7	146.14
Merged-chr16-76225918-3	chr16	76225425	76226425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103312.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	225.96	215.19	142.44	222.66	175.41	131.02	293.62	363.46	116.79
Merged-chr11-114668504-3	chr11	114667985	114668985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-58.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	132.72	121.65	112.84	164.63	103.56	88.42	138.36	123.36	119.28
Merged-chr13-23761511-3	chr13	23761020	23762020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178192)	promoter-TSS (NM_178192)	-271.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	387.85	471.84	215.51	286.08	365.28	269.27	243.98	386.9	196.1
Merged-chr7-97332198-3	chr7	97331667	97332667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039039)	promoter-TSS (NM_001039039)	-156.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	92.67	69.12	48.1	90.41	77.91	57.87	78.16	57.48	37.47
Merged-chr5-23418397-5	chr5	23417963	23418963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15890.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	204.8	263.11	162.79	178.13	189.87	176.03	182.72	238.77	152.38
Merged-chr3-116613973-3	chr3	116613473	116614473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289571, exon 7 of 16)	exon (NM_001289571, exon 7 of 16)	614.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	47.48	58.06	30.52	60.72	48.52	39.39	45.42	47.75	37.47
Merged-chr1-161876870-3	chr1	161876352	161877352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357401)	promoter-TSS (NM_001357401)	-170.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	155.03	143.3	129.49	190.95	198.27	102.88	184.83	204.28	94.93
Merged-chr17-23673667-3	chr17	23673163	23674163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181821)	promoter-TSS (NM_181821)	55.0	NM_181821	353502.0	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	129.28	131.32	121.17	111.33	126.89	109.32	140.47	135.75	77.44
Merged-chr5-143464566-3	chr5	143464062	143465062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144915)	promoter-TSS (NM_144915)	69.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	221.96	218.41	164.64	235.48	254.71	181.66	201.73	244.08	118.04
Merged-chr2-90579264-3	chr2	90578745	90579745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	1402.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	260.28	220.25	200.71	218.61	154.88	202.55	219.69	225.95	166.12
Merged-chr15-88751936-2	chr15	88751455	88752455	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181412, intron 1 of 2)	CpG	244.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	215.66	118.42	98.97	253.69	155.81	130.21	227.08	108.77	89.93
Merged-chr16-36999769-3	chr16	36999237	37000237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9270.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	40.04	28.57	34.22	34.41	36.39	34.56	41.19	42.01	26.23
Merged-chrX-106027189-3	chrX	106026690	106027690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109757)	promoter-TSS (NM_001109757)	-34.0	NM_001109757	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	66.36	56.68	38.85	56.68	43.39	36.97	61.26	46.87	39.35
Merged-chr2-14250353-3	chr2	14249852	14250852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-10651.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	115.55	171.41	86.02	139.67	110.56	76.36	123.57	150.34	77.44
Merged-chr19-45058467-3	chr19	45057954	45058954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10878.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	251.13	245.14	209.96	240.87	196.4	197.73	204.9	244.52	118.04
Merged-chr19-47263858-1	chr19	47263358	47264358	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164717, exon 14 of 14)	3' UTR (NM_001164717, exon 14 of 14)	9731.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	2.86	0.92	0.0	3.37	0.47	6.43	6.34	12.82	20.61
Merged-chr11-46436943-3	chr11	46436448	46437448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025426)	promoter-TSS (NM_025426)	1.0	NM_001104530	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	182.49	196.75	146.14	178.8	257.05	153.52	188.0	179.08	108.67
Merged-chr13-74208655-3	chr13	74208161	74209161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177333)	promoter-TSS (NM_177333)	39.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	65.21	64.97	72.15	63.42	61.58	105.3	70.76	54.83	59.33
Merged-chr4-132804632-3	chr4	132804132	132805132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8268.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	205.94	191.23	167.42	199.04	115.23	128.61	236.59	317.03	135.52
Merged-chr5-29736429-2	chr5	29735922	29736922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028426)	promoter-TSS (NR_028426)	-486.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	454.78	535.89	397.73	483.1	520.62	380.19	466.83	466.49	287.91
Merged-chr10-115251420-3	chr10	115250936	115251936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	57.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	396.43	331.3	210.89	431.14	466.97	241.94	370.72	351.52	158.63
Merged-chr10-39731496-3	chr10	39731005	39732005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	502.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	281.45	207.35	198.87	244.25	213.19	209.79	217.57	210.91	151.14
Merged-chr9-66124862-3	chr9	66124326	66125326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019727)	promoter-TSS (NM_019727)	60.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	82.38	98.61	118.39	96.48	98.9	130.21	113.01	162.72	84.31
Merged-chr6-83326135-3	chr6	83325666	83326666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145571, exon 1 of 6)	5' UTR (NM_145571, exon 1 of 6)	127.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	124.14	96.76	116.54	105.93	85.84	127.0	137.3	99.49	81.81
Merged-chr15-86191630-3	chr15	86191123	86192123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5482.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	145.3	122.57	99.89	204.44	122.23	97.26	121.46	168.91	80.56
Merged-chr13-5888968-3	chr13	5888466	5889466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27477.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	106.97	107.82	64.75	95.81	64.38	70.73	69.71	74.28	48.09
Merged-chr19-11065385-3	chr19	11064883	11065883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-14817.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	32.04	17.51	34.22	36.43	17.73	40.99	40.14	32.72	31.85
Merged-chr11-115413382-3	chr11	115412893	115413893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347645)	TTS (NM_001347645)	6526.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	404.44	370.01	192.39	385.94	324.69	254.8	288.34	418.73	159.88
Merged-chr12-44209280-1	chr12	44208780	44209780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013760, intron 1 of 2)	intron (NM_013760, intron 1 of 2)	788.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	152.74	179.25	87.87	194.32	212.73	137.45	176.38	160.51	96.18
Merged-chr14-73139949-3	chr14	73139441	73140441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2569.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	164.75	242.37	146.14	173.4	218.33	173.62	211.24	242.31	111.17
Merged-chr10-117323975-3	chr10	117323476	117324476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31108.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	36.04	32.25	36.07	34.41	22.86	23.31	40.14	20.78	21.86
Merged-chr14-15066577-3	chr14	15066091	15067091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	245776.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	44.05	39.63	21.27	47.23	38.72	29.74	73.93	66.77	27.48
Merged-chr3-103206591-3	chr3	103206097	103207097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34942.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	82.38	67.74	38.85	100.53	67.64	68.32	105.62	120.71	64.95
Merged-chr5-123884612-3	chr5	123884117	123885117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4597.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	62.35	28.57	12.95	33.74	12.13	8.04	30.63	13.27	9.99
Merged-chr7-25267506-3	chr7	25267017	25268017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302811)	promoter-TSS (NM_001302811)	-182.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	318.06	257.58	162.79	321.17	235.59	139.06	222.86	267.95	124.28
Merged-chr8-92854878-3	chr8	92854381	92855381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	-452.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	212.23	248.82	143.37	138.32	160.48	182.46	222.86	266.63	180.49
Merged-chr16-30977427-3	chr16	30976937	30977937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	103995.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	21.74	16.59	15.72	20.24	6.53	20.9	16.9	11.05	21.86
Merged-chr4-63401177-3	chr4	63400677	63401677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	2268.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	184.2	199.06	104.52	207.14	202.93	181.66	198.56	195.44	115.54
Merged-chr11-18925106-3	chr11	18924612	18925612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 8 of 11)	intron (NM_010789, intron 8 of 11)	93857.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.86	5.99	1.85	5.4	3.27	4.82	1.06	2.65	3.75
Merged-chr14-50062375-1	chr14	50061875	50062875	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	22304.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	2.86	0.92	3.7	2.02	1.87	4.02	54.92	59.25	37.47
Merged-chr12-8641010-3	chr12	8640518	8641518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33116.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	128.14	161.27	117.47	116.73	139.95	127.0	151.03	159.18	76.19
Merged-chr18-24436701-3	chr18	24436185	24437185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7515.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	8.01	13.36	5.55	14.84	7.46	4.02	12.67	15.92	8.12
Merged-chr1-7395704-3	chr1	7395199	7396199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	306779.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	10.87	9.68	5.55	9.45	9.33	9.65	8.45	14.15	0.62
Merged-chr15-5302577-3	chr15	5302068	5303068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58381.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	10.87	6.45	0.0	6.07	4.67	0.0	7.39	1.77	5.0
Merged-chr3-89196700-3	chr3	89196197	89197197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6228.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	58.35	57.6	62.9	68.15	56.91	76.36	83.44	63.67	19.98
Merged-chr12-55488907-3	chr12	55488412	55489412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010907)	TTS (NM_010907)	3735.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	237.4	244.22	142.44	217.26	201.53	185.68	202.79	275.47	158.01
Merged-chr3-69316763-3	chr3	69316219	69317219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178726)	promoter-TSS (NM_178726)	-199.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	142.44	170.49	91.57	181.5	181.01	129.41	180.61	160.06	85.56
Merged-chr4-43419986-3	chr4	43419512	43420512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	9122.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	197.93	212.88	152.62	213.21	163.28	135.84	108.79	134.42	91.81
Merged-chr16-49801669-3	chr16	49801188	49802188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53966.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	15.45	22.58	7.4	19.57	19.13	28.94	16.9	22.55	17.49
Merged-chr15-35938093-3	chr15	35937565	35938565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053071, intron 1 of 3)	CpG	181.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	34.9	43.77	37.0	48.58	40.59	33.76	53.87	53.06	28.73
Merged-chr4-12533113-3	chr4	12532620	12533620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-361105.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	42.33	30.41	22.2	34.41	27.52	18.49	33.8	31.84	11.87
Merged-chr16-90197573-3	chr16	90197120	90198120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23122.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	121.28	90.77	66.6	98.51	76.51	96.45	109.84	116.73	50.59
Merged-chr2-120154664-3	chr2	120154139	120155139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133838)	promoter-TSS (NM_133838)	-64.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	376.41	324.85	218.29	329.26	274.31	224.26	250.32	288.29	123.03
Merged-chr17-13760257-3	chr17	13759770	13760770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010806)	promoter-TSS (NM_010806)	-271.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.15	0.92	0.0	3.37	5.13	1.61	9.51	2.65	6.25
Merged-chr12-3297820-3	chr12	3297301	3298301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	12168.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	118.42	118.42	81.4	63.42	75.11	61.09	94.0	95.51	67.45
Merged-chr9-58253153-3	chr9	58252653	58253653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026942)	promoter-TSS (NM_026942)	-11.0	NR_028146	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	44.62	52.07	49.95	62.07	55.98	86.01	81.33	60.58	43.09
Merged-chr7-87925610-3	chr7	87925131	87926131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	341463.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	61.78	66.81	25.9	74.89	118.03	65.11	74.99	73.4	29.35
Merged-chr3-79153144-3	chr3	79152654	79153654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7279.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	135.0	117.04	61.05	126.17	119.43	81.99	126.74	133.98	46.84
Merged-chr7-126701238-3	chr7	126700726	126701726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301374, intron 6 of 10)	intron (NM_001301374, intron 6 of 10)	2994.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	28.03	26.26	24.97	40.48	17.26	22.51	28.52	20.34	13.12
Merged-chr1-88095086-3	chr1	88094573	88095573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	72.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	85.24	156.67	87.87	125.5	151.62	172.81	87.66	117.62	81.81
Merged-chr7-16614702-3	chr7	16614213	16615213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172739, exon 1 of 7)	5' UTR (NM_172739, exon 1 of 7)	280.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	153.88	145.15	168.34	157.88	137.15	174.42	155.26	103.02	95.55
Merged-chr2-26409209-3	chr2	26408712	26409712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290437)	promoter-TSS (NM_001290437)	7.0	NM_033134	64436.0	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	73.79	58.98	61.05	86.36	95.17	64.3	76.05	70.75	39.97
Merged-chr3-38202052-2	chr3	38201543	38202543	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6076.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	8.01	5.99	6.47	40.48	26.12	28.94	63.37	49.08	33.72
Merged-chrX-137049527-3	chrX	137049020	137050020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146261)	promoter-TSS (NM_146261)	-74.0	NM_146261	245622.0	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	24.03	24.42	33.3	20.24	25.19	20.09	25.35	21.67	16.24
Merged-chr18-32162920-3	chr18	32162362	32163362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011946)	promoter-TSS (NM_011946)	-227.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	286.6	251.13	186.84	209.16	274.77	164.78	212.29	190.57	125.53
Merged-chr5-16553465-3	chr5	16552968	16553968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-27.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	163.04	199.52	102.67	182.17	189.87	155.13	171.1	238.33	96.18
Merged-chr11-6274944-3	chr11	6274436	6275436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134020)	promoter-TSS (NM_134020)	-99.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	68.65	70.5	63.82	69.5	52.25	60.28	67.6	77.82	30.6
Merged-chr17-24779677-2	chr17	24779179	24780179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24703.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	39.47	43.31	29.6	40.48	32.66	82.79	2.11	3.1	0.62
Merged-chr13-99196440-3	chr13	99195966	99196966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	11643.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	66.93	57.6	34.22	66.12	69.98	28.94	81.33	78.71	28.1
Merged-chr7-38085040-3	chr7	38084524	38085524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22466.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	21.74	22.58	22.2	12.82	18.19	23.31	17.96	19.9	16.86
Merged-chr18-36512414-3	chr18	36511908	36512908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3397.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	196.79	144.69	52.72	178.13	117.56	90.83	172.16	170.23	81.81
Merged-chr7-96976179-3	chr7	96975675	96976675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	ORR1D2|LTR|ERVL-MaLR	24648.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	48.62	43.77	33.3	62.75	47.58	36.97	45.42	35.82	18.11
Merged-chr13-16012410-3	chr13	16011919	16012919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008380, intron 2 of 4)	intron (NM_008380, intron 2 of 4)	568.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	36.04	31.79	11.1	29.01	20.99	24.11	23.24	18.13	1.25
Merged-chr10-40212601-3	chr10	40212096	40213096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34383.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	9.15	2.3	1.85	9.45	6.06	4.82	6.34	2.21	2.5
Merged-chr6-88446521-3	chr6	88446027	88447027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023060)	promoter-TSS (NM_023060)	12.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	23.45	18.43	18.5	22.27	17.73	22.51	22.18	10.61	10.62
Merged-chr17-86128462-3	chr17	86127950	86128950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 5 of 20)	L1MC4|LINE|L1	16725.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	98.97	84.32	49.95	135.62	86.3	93.24	62.31	42.45	22.48
Merged-chr6-129400094-3	chr6	129399580	129400580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019985, exon 2 of 6)	exon (NM_019985, exon 2 of 6)	2783.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	276.87	297.67	171.12	290.13	271.51	216.22	285.17	345.33	166.75
Merged-chr2-58480943-3	chr2	58480434	58481434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	80476.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	65.79	65.43	49.95	33.74	32.66	36.17	23.24	32.28	37.47
Merged-chr9-45248280-1	chr9	45247780	45248780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	18427.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	153.31	149.29	90.65	169.35	117.09	159.95	168.99	153.87	122.41
Merged-chr2-160646546-3	chr2	160646125	160647125	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009408, exon 2 of 21)	exon (NM_009408, exon 2 of 21)	728.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	381.56	519.76	366.28	426.42	487.5	349.65	406.63	427.58	296.03
Merged-chr15-84184203-3	chr15	84183716	84184716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8017.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	89.24	101.83	113.77	70.17	62.98	108.51	153.15	157.41	92.43
Merged-chr16-70803721-3	chr16	70803228	70804228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187303.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	51.48	43.31	24.05	41.16	20.06	49.03	29.57	39.8	34.35
Merged-chr2-94437077-3	chr2	94436568	94437568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1118.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	82.38	100.91	98.97	83.66	63.45	110.12	96.11	82.24	79.32
Merged-chr19-14635467-3	chr19	14634978	14635978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37295.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	29.75	40.55	29.6	37.78	27.52	34.56	44.36	27.41	41.22
Merged-chr8-124230059-3	chr8	124229556	124230556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1338.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	43.48	47.46	61.05	35.76	15.39	34.56	104.56	75.17	84.94
Merged-chr12-108990607-3	chr12	108990127	108991127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	77590.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	26.89	33.18	29.6	36.43	36.85	40.19	41.19	38.03	24.36
Merged-chr1-154786406-3	chr1	154785900	154786900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60480.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	10.3	5.07	3.7	8.77	1.87	4.82	10.56	9.29	8.12
Merged-chr16-96082541-3	chr16	96082043	96083043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-115.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	343.8	234.08	182.22	364.35	260.78	224.26	248.2	160.95	124.91
Merged-chr15-72810133-3	chr15	72809673	72810673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	151.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	159.6	209.2	133.19	141.69	189.4	169.6	149.98	225.06	114.91
Merged-chr11-8575549-3	chr11	8575063	8576063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	88972.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	210.52	233.16	188.69	228.73	259.85	123.78	195.39	230.81	116.16
Merged-chr1-36273491-3	chr1	36272996	36273996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153408)	promoter-TSS (NM_153408)	-71.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	308.34	247.9	197.94	383.24	283.17	243.55	363.33	376.28	164.25
Merged-chr7-101900503-1	chr7	101900003	101901003	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027532)	TTS (NM_027532)	3282.0	NM_001282088	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	160.18	175.1	100.82	185.55	167.01	115.75	214.41	207.82	111.17
Merged-chr2-157457629-3	chr2	157457105	157458105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 4 of 13)	CpG	33312.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	8.58	11.06	12.02	16.19	6.53	3.22	0.0	6.19	3.75
Merged-chr15-50854600-3	chr15	50854095	50855095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	34454.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	42.33	40.09	31.45	41.83	29.39	20.09	33.8	30.07	22.48
Merged-chr11-78261616-3	chr11	78261109	78262109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002004)	promoter-TSS (NM_001002004)	-145.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	86.95	49.76	73.07	73.54	28.92	90.02	60.2	55.71	67.45
Merged-chr16-49853158-3	chr16	49852658	49853658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2496.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	102.97	81.56	53.65	109.3	64.38	77.16	111.96	139.72	76.82
Merged-chr12-32642668-3	chr12	32642160	32643160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177675.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	27.46	26.26	5.55	18.22	11.66	4.82	11.62	11.5	6.25
Merged-chr16-23609899-3	chr16	23609406	23610406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023386)	promoter-TSS (NM_023386)	-13.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	297.47	255.27	136.89	259.09	261.24	175.23	303.13	442.17	144.27
Merged-chr8-106150319-3	chr8	106149842	106150842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133792)	promoter-TSS (NM_133792)	-12.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	230.54	246.52	199.79	297.55	239.79	249.98	271.44	348.87	138.65
Merged-chr9-123529683-3	chr9	123529176	123530176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-77.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	188.78	181.09	133.19	174.75	145.55	155.13	193.28	133.98	106.79
Merged-chr5-4530470-3	chr5	4529950	4530950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227766.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	16.02	27.65	24.05	35.09	54.58	60.28	35.91	31.39	44.34
Merged-chr10-118095927-1	chr10	118095427	118096427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-45860.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	139.58	137.77	114.69	204.44	151.15	154.33	188.0	174.66	104.3
Merged-chr18-53158823-3	chr18	53158329	53159329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17463.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	24.6	26.26	25.9	24.29	9.33	29.74	36.97	17.24	24.98
Merged-chr5-20882330-3	chr5	20881831	20882831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	-122.0	NM_177601	212090.0	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	121.28	137.77	88.8	132.92	127.36	126.19	146.81	128.23	69.95
Merged-chr17-69144555-3	chr17	69144071	69145071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-12173.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	89.81	72.8	54.57	89.74	90.97	75.56	130.97	124.25	59.33
Merged-chr16-36633283-3	chr16	36632795	36633795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	32782.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	231.11	188.92	157.24	250.99	159.08	187.28	257.71	244.08	112.42
Merged-chr11-107132171-3	chr11	107131638	107132638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176850)	promoter-TSS (NM_176850)	-216.0	NM_001359590	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	131.0	76.03	108.22	110.65	59.25	67.52	123.57	52.62	69.32
Merged-chrUn_GL456392-23116-1	chrUn_GL456392	22616	23616	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	92.94	117.62	0.0
Merged-chr9-7838260-3	chr9	7837770	7838770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	97.82	108.75	56.42	90.41	86.3	42.6	136.25	122.48	67.45
Merged-chrX-162888366-3	chrX	162887863	162888863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025932)	promoter-TSS (NM_025932)	99.0	NM_025932	67043.0	Mm.44207	NM_025932	ENSMUSG00000031357	Syap1	2010110O17Rik|AW011796|BSTA	synapse associated protein 1	protein-coding	71.51	70.5	58.27	77.59	71.38	69.93	79.21	77.82	54.33
Merged-chr3-121570849-3	chr3	121570340	121571340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38496.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	33.75	27.19	20.35	33.74	20.53	29.74	49.64	50.41	28.1
Merged-chr6-42382270-3	chr6	42381780	42382780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9012.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	177.91	172.33	114.69	170.03	117.56	113.33	102.45	106.56	70.57
Merged-chr8-105858707-3	chr8	105858215	105859215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	92.1	110.13	58.27	93.11	61.58	82.79	134.14	108.33	88.06
Merged-chr1-39577496-3	chr1	39576996	39577996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033135)	promoter-TSS (NM_001033135)	-149.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	293.46	245.6	164.64	264.49	199.2	207.38	284.11	235.23	159.25
Merged-chr8-84664104-3	chr8	84663597	84664597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1245.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	141.87	117.5	98.05	106.61	107.3	114.14	138.36	167.58	101.8
Merged-chr19-34520387-3	chr19	34519885	34520885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7089.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	124.71	165.42	135.97	151.81	128.76	138.25	160.54	221.08	143.64
Merged-chr6-136803896-1	chr6	136803396	136804396	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175652)	TTS (NM_175652)	535.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	298.04	367.71	319.11	319.14	387.2	303.03	138.36	165.81	121.78
Merged-chr1-164307560-3	chr1	164307062	164308062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293313)	promoter-TSS (NM_001293313)	-75.0	NM_001357052	66352.0	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	73.79	82.02	50.87	79.62	64.38	58.68	87.66	68.09	43.72
Merged-chr15-61985321-5	chr15	61984799	61985799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-42.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	113.84	131.32	120.24	134.27	109.63	105.3	123.57	133.53	88.68
Merged-chr10-12868776-1	chr10	12868276	12869276	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7041.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	115.55	104.6	71.22	141.69	94.23	61.09	163.71	133.09	83.69
Merged-chr16-91461381-3	chr16	91460883	91461883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-3721.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	291.18	246.98	92.5	273.94	224.86	159.15	220.74	249.38	116.79
Merged-chr7-29232510-3	chr7	29231956	29232956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033525)	promoter-TSS (NM_001033525)	66.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	148.16	117.04	184.07	144.39	98.9	172.01	198.56	165.37	148.64
Merged-chr3-90293037-3	chr3	90292520	90293520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22871.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	125.28	133.17	116.54	122.8	106.83	122.98	126.74	120.27	101.17
Merged-chr12-57282211-1	chr12	57281711	57282711	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51786.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.0	5.07	2.77	3.37	3.73	1.61	0.0	4.86	3.12
Merged-chr16-85173204-3	chr16	85172736	85173736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	CpG	471.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	137.86	129.48	169.27	147.76	160.95	176.83	172.16	125.13	91.18
Merged-chr1-131188736-3	chr1	131188240	131189240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	MIR3|SINE|MIR	11445.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	51.48	50.69	36.07	47.9	35.92	45.82	43.3	42.89	39.35
Merged-chr6-24964997-3	chr6	24964457	24965457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	41.76	56.68	35.15	45.21	36.39	52.25	61.26	57.04	30.6
Merged-chr6-83125145-3	chr6	83124651	83125651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023547)	promoter-TSS (NM_023547)	-122.0	NM_023547	70020.0	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	40.62	37.32	15.72	42.51	37.32	47.42	40.14	34.93	25.61
Merged-chr4-141182170-3	chr4	141181679	141182679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 4 of 9)	intron (NM_172518, intron 4 of 9)	-31777.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	23.45	11.06	1.85	23.62	16.79	24.11	21.12	19.9	23.11
Merged-chr1-132417463-3	chr1	132416970	132417970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	17.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	79.52	80.64	67.52	80.29	68.11	56.27	89.78	52.62	62.45
Merged-chr3-95985426-3	chr3	95984930	95985930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045872)	promoter-TSS (NR_045872)	-80.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	95.53	87.55	92.5	114.03	109.63	103.69	86.61	109.22	54.96
Merged-chr15-72837133-3	chr15	72836637	72837637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-26813.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	54.92	82.02	57.35	58.7	42.45	31.35	72.88	63.67	57.46
Merged-chr18-80708227-3	chr18	80707747	80708747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164112)	promoter-TSS (NM_001164112)	-74.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	317.49	267.72	308.93	310.37	230.92	147.09	322.14	188.81	163.63
Merged-chr14-60251498-3	chr14	60251004	60252004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-25.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	355.82	362.18	283.04	309.02	345.22	277.31	295.73	319.24	147.39
Merged-chr1-165621926-3	chr1	165621426	165622426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	12615.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	38.33	35.02	22.2	33.06	30.79	35.37	40.14	26.53	29.98
Merged-chr7-35151046-3	chr7	35150562	35151562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31769.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	34.9	17.05	24.97	23.62	9.33	21.7	14.79	13.27	30.6
Merged-chr2-155627223-1	chr2	155626723	155627723	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 24 of 41)	intron (NM_001085378, intron 24 of 41)	4343.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	2.29	0.46	0.0	4.72	0.93	1.61	3.17	1.33	1.25
Merged-chr11-5707675-3	chr11	5707160	5708160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026080)	promoter-TSS (NM_026080)	39.0	NM_026080	64660.0	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	53.2	41.01	29.6	50.6	34.99	49.03	58.09	38.47	16.86
Merged-chr1-23382764-3	chr1	23382289	23383289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	CpG	386.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	101.83	86.17	128.57	80.29	55.98	73.95	73.93	44.22	66.2
Merged-chr19-45673148-3	chr19	45672664	45673664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12971.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	36.61	33.64	26.82	27.66	20.53	21.7	25.35	32.72	24.98
Merged-chr16-43364307-3	chr16	43363829	43364829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	55867.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	64.07	72.34	74.92	60.72	55.98	81.18	80.27	79.15	44.97
Merged-chr12-38780285-3	chr12	38779780	38780780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007960, exon 1 of 13)	5' UTR (NM_007960, exon 1 of 13)	198.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	259.71	382.91	178.52	238.85	271.04	195.32	249.26	358.6	206.72
Merged-chr4-149407643-3	chr4	149407133	149408133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022022, intron 1 of 26)	B4A|SINE|B4	18998.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	28.03	30.41	37.0	31.04	27.06	36.17	22.18	19.01	21.86
Merged-chr7-80754228-3	chr7	80753715	80754715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	49116.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	61.21	43.31	38.85	72.19	55.05	55.46	36.97	35.82	30.6
Merged-chr16-27389002-3	chr16	27388520	27389520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	64.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	284.31	235.92	210.89	270.56	160.95	208.18	264.05	219.31	206.72
Merged-chr11-11808933-3	chr11	11808415	11809415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163359)	promoter-TSS (NM_001163359)	47.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	113.84	149.75	110.07	112.0	170.28	106.1	125.69	170.68	66.2
Merged-chr19-33392168-3	chr19	33391656	33392656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001167818, exon 1 of 7)	5' UTR (NM_001167818, exon 1 of 7)	139.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	162.46	162.2	131.34	199.72	198.73	140.66	144.7	107.89	70.57
Merged-chr18-32352816-3	chr18	32352318	32353318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-24399.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	42.9	35.02	25.9	50.6	35.92	25.72	65.48	68.09	30.6
Merged-chr6-50381773-3	chr6	50381262	50382262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	MER5B|DNA|hAT-Charlie	1075.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	82.95	102.29	73.07	53.98	58.31	60.28	105.62	95.51	59.33
Merged-chr9-35101780-3	chr9	35101286	35102286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-14942.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	32.04	24.42	18.5	26.31	27.06	34.56	17.96	17.69	16.24
Merged-chr17-73942406-3	chr17	73941916	73942916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	7780.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	404.44	399.96	216.44	508.74	504.3	253.19	389.73	493.46	172.37
Merged-chr14-103469628-3	chr14	103469149	103470149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43692.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	196.21	141.92	39.77	173.4	95.17	56.27	135.19	103.47	44.34
Merged-chr11-86652881-3	chr11	86652381	86653381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	18394.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	72.65	86.17	60.12	80.97	80.71	68.32	86.61	97.28	60.58
Merged-chr6-134922960-3	chr6	134922463	134923463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009875, intron 2 of 2)	intron (NM_009875, intron 2 of 2)	2562.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	73.22	108.75	68.45	74.22	69.51	67.52	83.44	112.31	87.43
Merged-chr8-111343379-3	chr8	111342864	111343864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5159.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	14.3	17.05	14.8	14.84	8.86	17.68	8.45	10.61	7.49
Merged-chr15-9131757-3	chr15	9131293	9132293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	8661.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	309.48	311.49	177.59	346.8	281.77	215.42	254.54	350.2	137.4
Merged-chr4-131861105-3	chr4	131860608	131861608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025297, intron 5 of 9)	intron (NM_025297, intron 5 of 9)	-12531.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	30.89	40.09	29.6	38.46	21.46	24.92	38.02	22.55	23.11
Merged-chr13-73804006-3	chr13	73803503	73804503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40306.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	121.85	95.38	119.32	157.21	109.16	132.63	92.94	110.98	61.2
Merged-chr16-20358068-3	chr16	20357566	20358566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32662.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	58.35	41.47	31.45	76.92	43.85	47.42	63.37	43.77	10.62
Merged-chr15-57696203-1	chr15	57695703	57696703	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	1536.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	143.59	108.75	80.47	151.81	77.91	84.4	99.28	49.08	63.7
Merged-chr14-70057453-1	chr14	70056953	70057953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-19992.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	298.04	204.13	180.37	260.44	188.94	123.78	251.37	276.8	143.02
Merged-chr3-108653918-3	chr3	108653424	108654424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145543)	promoter-TSS (NM_145543)	-3.0	NM_001355632	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	120.7	111.51	78.62	120.1	74.64	90.02	129.91	116.29	71.2
Merged-chr9-64811975-1	chr9	64811475	64812475	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	CpG-15087	964.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	189.92	128.1	79.55	162.61	85.84	105.3	140.47	95.95	61.2
Merged-chr5-21131359-3	chr5	21130867	21131867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44912.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	181.34	185.7	87.87	197.02	103.1	93.24	161.6	167.58	78.69
Merged-chr11-60775113-3	chr11	60774616	60775616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	2249.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	53.2	56.68	59.2	78.94	46.18	106.9	72.88	80.92	61.83
Merged-chr3-90669051-3	chr3	90668618	90669618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013650)	promoter-TSS (NM_013650)	47.0	NM_013650	20201.0	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	10.3	15.21	5.55	21.59	27.06	41.8	10.56	6.19	13.12
Merged-chr1-138619300-3	chr1	138618790	138619790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	CpG	467.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	141.3	137.77	130.42	163.96	122.69	134.23	136.25	122.48	74.94
Merged-chr17-34301374-1	chr17	34300874	34301874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4493.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	70.36	68.2	21.27	10.8	18.66	8.04	7.39	11.94	3.12
Merged-chr11-79088506-1	chr11	79088006	79089006	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-28670.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	136.15	134.09	98.97	163.28	141.82	112.53	134.14	136.19	79.94
Merged-chr19-5023834-5	chr19	5023303	5024303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007854)	promoter-TSS (NM_007854)	-203.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	222.53	193.07	198.87	202.42	126.42	189.69	183.78	210.91	136.15
Merged-chr10-13983905-3	chr10	13983412	13984412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	17533.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	318.63	344.67	147.99	363.67	363.88	250.78	310.52	449.24	141.77
Merged-chr5-137745927-3	chr5	137745418	137746418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029805)	promoter-TSS (NM_029805)	-51.0	NM_023910	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	58.92	81.56	93.42	88.39	55.51	123.78	101.39	100.81	79.32
Merged-chr17-35200639-3	chr17	35200126	35201126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278601, intron 2 of 2)	intron (NM_001278601, intron 2 of 2)	1381.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	170.47	97.23	109.14	151.81	81.64	116.55	101.39	87.11	77.44
Merged-chr16-91851828-5	chr16	91851356	91852356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79774.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	227.11	199.06	165.57	276.63	216.46	185.68	208.07	210.91	124.91
Merged-chr10-99081737-3	chr10	99081230	99082230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25352.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	38.9	42.39	10.17	16.87	14.46	12.86	49.64	38.47	23.11
Merged-chr1-161035522-1	chr1	161035022	161036022	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	606.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	150.45	185.7	111.92	126.85	160.95	111.73	163.71	173.33	92.43
Merged-chr1-39511982-3	chr1	39511471	39512471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER92D|LTR|ERV1	-23730.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	19.45	16.59	0.0	16.87	20.06	6.43	21.12	24.32	4.37
Merged-chr5-130023917-2	chr5	130023410	130024410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133768, intron 2 of 16)	intron (NM_133768, intron 2 of 16)	471.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	145.3	167.73	121.17	168.68	161.88	143.88	123.57	147.68	80.56
Merged-chr3-37639878-3	chr3	37639377	37640377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305442)	promoter-TSS (NM_001305442)	-70.0	NM_001305441	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	120.13	99.07	67.52	24.96	22.86	10.45	11.62	10.61	5.0
Merged-chr9-85326738-3	chr9	85326289	85327289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001160378, exon 2 of 3)	exon (NM_001160378, exon 2 of 3)	335.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	225.39	258.5	268.24	230.75	245.38	198.54	273.55	251.15	209.22
Merged-chr7-25219993-3	chr7	25219501	25220501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-142.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	232.83	223.48	130.42	226.03	250.05	154.33	303.13	380.71	144.89
Merged-chr18-61707671-3	chr18	61707186	61708186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172832)	promoter-TSS (NM_172832)	-51.0	NM_172832	240334.0	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	3.43	5.99	11.1	7.42	4.67	7.23	4.22	3.98	6.25
Merged-chr2-31688208-3	chr2	31687728	31688728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283047)	promoter-TSS (NM_001283047)	241.0	NR_153862	108168742.0	Mm.416860	NR_153862		Gm13427	-	predicted gene 13427	ncRNA	186.49	205.97	134.12	182.17	163.28	165.58	177.44	193.23	104.92
Merged-chr1-36052801-3	chr1	36052318	36053318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15582.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	61.78	64.05	29.6	68.82	36.85	49.03	72.88	57.48	33.1
Merged-chr3-54246625-2	chr3	54246121	54247121	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	90564.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	9.15	7.83	9.25	21.59	19.13	15.27	20.07	19.01	25.61
Merged-chr14-47395857-2	chr14	47395366	47396366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144553, exon 14 of 19)	exon (NM_144553, exon 14 of 19)	22006.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	27.46	23.96	12.95	43.86	26.59	49.83	3.17	1.33	2.5
Merged-chr2-156863037-3	chr2	156862551	156863551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015591)	promoter-TSS (NR_015591)	-71.0	NM_026124	67388.0	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	342.66	340.06	287.66	353.55	294.83	293.38	302.07	330.74	214.84
Merged-chr6-39592666-3	chr6	39592159	39593159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358797)	promoter-TSS (NM_001358797)	94.0	NR_152450	68198.0	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	225.39	273.71	166.49	223.33	243.52	143.07	255.6	264.42	122.41
Merged-chr13-97801533-1	chr13	97801033	97802033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	50421.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	0.57	3.23	0.0	1.35	1.87	5.63	4.22	1.77	1.25
Merged-chr8-95081011-3	chr8	95080455	95081455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028805)	promoter-TSS (NM_028805)	-246.0	NM_028805	74187.0	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	75.51	80.64	49.95	74.89	65.31	44.21	82.38	61.9	68.7
Merged-chr4-147936694-3	chr4	147936189	147937189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011122)	promoter-TSS (NM_011122)	87.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	92.1	99.53	78.62	125.5	75.11	108.51	126.74	118.5	68.07
Merged-chr6-86793632-3	chr6	86793136	86794136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013471)	promoter-TSS (NM_013471)	-52.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	180.77	121.65	104.52	155.19	158.15	78.77	70.76	80.03	14.99
Merged-chr16-33950335-3	chr16	33949852	33950852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16686.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	46.34	52.53	35.15	56.0	40.12	53.85	103.51	71.19	48.71
Merged-chr14-26580112-3	chr14	26579609	26580609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145969, intron 1 of 17)	intron (NM_145969, intron 1 of 17)	559.0	NM_145969	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	198.5	234.08	241.41	263.81	253.31	188.89	216.52	232.58	148.01
Merged-chr16-31663965-5	chr16	31663467	31664467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252434)	promoter-TSS (NM_001252434)	32.0	NM_001252434	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	189.92	57.14	83.25	181.5	55.98	71.54	179.55	58.37	34.35
Merged-chrX-75875174-3	chrX	75874677	75875677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145629)	promoter-TSS (NM_145629)	5.0	NM_001346519	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	13.73	7.37	7.4	15.52	12.6	20.9	6.34	4.86	12.49
Merged-chr8-121108392-3	chr8	121107901	121108901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166482)	promoter-TSS (NM_001166482)	-22.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	108.69	143.76	119.32	120.1	132.49	102.88	116.18	114.52	90.56
Merged-chr17-40934625-3	chr17	40934120	40935120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008650)	promoter-TSS (NM_008650)	-65.0	NM_008650	17850.0	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	183.06	216.11	142.44	147.76	175.41	131.82	201.73	247.61	92.43
Merged-chr10-127675317-3	chr10	127674810	127675810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1755.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	52.63	46.08	32.37	41.16	26.59	55.46	60.2	76.05	44.97
Merged-chr10-115384904-3	chr10	115384401	115385401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033261)	promoter-TSS (NM_001033261)	-58.0	NM_001033261	216345.0	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	370.12	331.76	264.54	351.53	324.69	258.82	299.96	261.32	237.95
Merged-chr12-16881884-3	chr12	16881388	16882388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13090.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	171.04	251.13	137.82	186.9	197.8	137.45	185.89	252.92	115.54
Merged-chrX-140505979-3	chrX	140505444	140506444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36724.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	34.9	36.86	23.12	60.05	33.59	34.56	23.24	22.55	59.95
Merged-chr2-160335252-3	chr2	160334743	160335743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7749.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	27.46	23.04	12.95	24.96	19.13	14.47	34.85	31.39	22.48
Merged-chr10-42680800-3	chr10	42680307	42681307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	1891.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	36.04	32.72	48.1	29.69	20.99	29.74	39.08	18.13	29.35
Merged-chr2-102967632-3	chr2	102967124	102968124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65959.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	144.73	142.38	86.95	193.64	155.35	155.93	135.19	164.04	105.55
Merged-chr12-51829475-3	chr12	51828987	51829987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144788)	promoter-TSS (NM_144788)	49.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	490.25	465.85	340.38	475.0	522.02	384.21	465.78	322.34	237.32
Merged-chr8-84982294-3	chr8	84981801	84982801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3553.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	354.1	313.79	262.69	357.6	254.71	237.12	322.14	382.47	210.47
Merged-chr4-118409294-3	chr4	118408791	118409791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	-28.0	NM_198170	230676.0	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|TIGR	seizure threshold 2	protein-coding	84.09	84.32	95.27	78.27	81.64	84.4	67.6	62.35	51.84
Merged-chr2-92484749-2	chr2	92484244	92485244	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24226.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	1.14	1.84	0.0	78.27	62.05	146.29	117.24	115.41	124.28
Merged-chr9-63124327-3	chr9	63123835	63124835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22645.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	89.81	95.84	61.97	112.68	87.7	96.45	65.48	88.88	56.83
Merged-chr16-91011169-3	chr16	91010679	91011679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028368)	promoter-TSS (NR_028368)	-70.0	NR_028368	67394.0	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	644.13	554.78	467.1	564.74	537.42	401.89	449.93	544.75	329.13
Merged-chr14-57387173-3	chr14	57386675	57387675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	11308.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	52.06	47.0	48.1	60.72	42.92	70.73	47.53	26.97	36.85
Merged-chr17-56764796-3	chr17	56764314	56765314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144858)	promoter-TSS (NM_144858)	63.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	253.99	205.05	228.46	259.09	187.07	214.61	242.92	225.95	166.12
Merged-chr1-128705346-3	chr1	128704860	128705860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113061.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	42.9	29.03	19.42	62.07	35.92	36.97	41.19	29.18	18.74
Merged-chr6-72139698-3	chr6	72139199	72140199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-16502.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	192.21	210.58	134.12	200.39	206.2	122.18	189.06	284.76	108.67
Merged-chr2-140844237-3	chr2	140843739	140844739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-172763.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	19.45	7.83	3.7	12.14	6.53	5.63	6.34	14.15	8.74
Merged-chr1-154008797-3	chr1	154008324	154009324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108895.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	97.25	124.41	68.45	73.54	97.97	77.97	98.23	90.64	69.95
Merged-chr1-86214429-3	chr1	86213928	86214928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	59648.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	28.03	17.51	12.02	29.69	25.66	19.29	12.67	7.07	12.49
Merged-chr11-51763671-3	chr11	51763160	51764160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025535)	promoter-TSS (NM_025535)	-3.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	136.72	131.78	84.17	145.06	160.95	109.32	145.75	131.32	76.19
Merged-chr13-112337319-3	chr13	112336829	112337829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	48811.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	12.59	9.68	9.25	28.34	9.33	9.65	6.34	11.5	8.74
Merged-chr10-52273209-3	chr10	52272698	52273698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025705, intron 2 of 10)	intron (NM_025705, intron 2 of 10)	39579.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	11.44	8.75	10.17	16.87	18.66	19.29	12.67	10.61	2.5
Merged-chr13-43769106-3	chr13	43768596	43769596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-16016.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	115.55	73.73	41.62	166.66	98.9	77.16	109.84	80.47	55.58
Merged-chr12-82448300-3	chr12	82447807	82448807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 22 of 23)	intron (NM_001167983, intron 22 of 23)	136958.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	106.4	80.18	67.52	78.94	66.71	46.62	105.62	100.37	36.85
Merged-chr13-55513458-3	chr13	55512940	55513940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026131)	promoter-TSS (NM_026131)	6.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	14.3	16.59	16.65	15.52	12.6	20.9	21.12	3.54	3.75
Merged-chr4-151862586-3	chr4	151862092	151863092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-824.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	246.56	255.27	198.87	207.14	235.12	242.74	239.75	203.4	171.12
Merged-chr12-79132339-3	chr12	79131848	79132848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	1560.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	48.05	45.62	12.02	206.46	158.15	137.45	33.8	38.03	27.48
Merged-chr3-27258614-3	chr3	27258109	27259109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	-58468.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	346.66	483.36	131.34	182.85	276.17	129.41	208.07	226.39	103.05
Merged-chr10-127288840-3	chr10	127288357	127289357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033072, exon 1 of 13)	5' UTR (NM_033072, exon 1 of 13)	161.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	309.48	144.69	224.76	236.83	135.29	159.95	204.9	175.54	116.79
Merged-chr3-59186593-1	chr3	59186093	59187093	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	8511.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	12.01	10.6	3.7	9.45	4.67	3.22	8.45	4.42	3.75
Merged-chr2-120134922-3	chr2	120134411	120135411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	19664.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	82.38	71.88	36.07	101.21	67.64	63.5	78.16	77.82	40.59
Merged-chr17-17624631-3	chr17	17624123	17625123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-134.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	283.17	335.45	301.53	267.19	272.44	305.44	242.92	295.37	236.7
Merged-chr11-43748037-3	chr11	43747547	43748547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133795)	promoter-TSS (NM_133795)	-74.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	145.87	138.7	96.2	149.11	136.22	111.73	158.43	145.03	87.43
Merged-chr1-161517531-3	chr1	161517025	161518025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22868.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	89.81	76.03	51.8	85.69	52.25	39.39	64.43	65.44	33.1
Merged-chr2-167885763-3	chr2	167885264	167886264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	57.21	31.33	57.35	56.68	30.32	33.76	66.54	51.29	33.1
Merged-chr3-133659991-3	chr3	133659502	133660502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115612.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	5.72	9.68	13.87	7.42	2.33	4.82	8.45	3.98	8.12
Merged-chr18-31759837-3	chr18	31759258	31760258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242430)	promoter-TSS (NM_001242430)	-66.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	135.0	167.26	130.42	136.29	151.62	151.11	153.15	144.59	103.05
Merged-chr4-70535048-3	chr4	70534548	70535548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172694)	promoter-TSS (NM_172694)	-120.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	46.91	21.66	44.4	43.18	19.13	24.11	25.35	28.3	19.98
Merged-chr2-167493066-3	chr2	167492543	167493543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170756)	promoter-TSS (NM_170756)	-169.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	625.83	464.93	415.3	537.08	405.4	315.09	393.96	412.98	193.6
Merged-chr8-71488633-3	chr8	71488136	71489136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_032544, exon 1 of 9)	5' UTR (NM_032544, exon 1 of 9)	533.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	16.59	38.71	20.35	32.39	30.32	43.4	43.3	39.8	26.23
Merged-chr1-35860947-3	chr1	35860438	35861438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-207462.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	26.31	29.95	14.8	12.14	6.53	1.61	7.39	10.61	3.75
Merged-chr4-105204384-3	chr4	105203890	105204890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 2 of 5)	MIRc|SINE|MIR	47043.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	29.17	23.5	21.27	30.36	10.26	16.08	64.43	31.39	21.23
Merged-chr7-114066909-3	chr7	114066359	114067359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	50922.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	7.44	7.37	1.85	6.07	2.8	6.43	26.4	13.27	8.12
Merged-chr4-56831301-1	chr4	56830801	56831801	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018761, intron 8 of 18)	intron (NM_018761, intron 8 of 18)	-28970.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	5.72	2.3	4.62	4.05	5.13	5.63	8.45	6.63	5.0
Merged-chr6-57774001-3	chr6	57773514	57774514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51111.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	81.8	71.88	54.57	75.57	45.72	65.11	42.25	61.46	38.1
Merged-chr4-43046214-3	chr4	43045711	43046711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172691)	promoter-TSS (NM_172691)	9.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	151.59	77.87	66.6	119.43	71.38	52.25	98.23	95.51	45.59
Merged-chr8-20550553-1	chr8	20550053	20551053	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64374.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	9.15	10.6	3.7	14.84	11.66	0.0	32.74	28.74	5.0
Merged-chr8-127815004-3	chr8	127814526	127815526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	463199.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	86.38	76.95	48.1	52.63	59.25	59.48	116.18	119.39	40.59
Merged-chr14-36968793-3	chr14	36968295	36969295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027045)	promoter-TSS (NM_027045)	-31.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	53.2	64.51	50.87	77.59	62.98	65.11	83.44	73.84	20.61
Merged-chr5-136084998-3	chr5	136084508	136085508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1092.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	340.94	230.39	209.96	323.19	195.47	169.6	380.23	282.1	151.14
Merged-chr5-99250485-2	chr5	99249990	99250990	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	2437.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	365.54	390.28	212.74	342.76	340.55	270.88	344.32	349.31	209.22
Merged-chr4-44167953-3	chr4	44167427	44168427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	29.0	NM_001355181	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	96.11	84.78	97.12	112.0	85.37	112.53	106.67	95.07	73.07
Merged-chr1-170573521-2	chr1	170573027	170574027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	16322.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.43	3.69	3.7	38.46	15.86	24.92	12.67	16.36	6.25
Merged-chr19-34583412-3	chr19	34582898	34583898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010501)	promoter-TSS (NM_010501)	-131.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	108.12	128.1	80.47	124.82	130.62	77.97	134.14	175.98	80.56
Merged-chrUn_GL456392-22755-1	chrUn_GL456392	22255	23255	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	106.67	126.02	0.0
Merged-chr17-46202703-3	chr17	46202226	46203226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030715)	promoter-TSS (NM_030715)	-101.0	NM_030715	80905.0	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	68.07	57.14	79.55	67.47	65.31	71.54	77.1	69.86	48.09
Merged-chr17-31057964-7	chr17	31057484	31058484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	CpG	290.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	259.14	226.25	141.52	379.19	305.1	268.47	283.06	289.18	106.79
Merged-chr2-129306193-3	chr2	129305688	129306688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 4 of 5)	non-coding (NR_040371, exon 4 of 5)	3784.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	211.66	151.14	123.02	164.63	71.84	81.18	147.87	179.96	85.56
Merged-chr9-16312865-3	chr9	16312364	16313364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65367.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	29.17	47.0	35.15	47.9	48.52	51.44	38.02	53.06	19.98
Merged-chr6-29246776-3	chr6	29246254	29247254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25734.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	96.11	57.6	24.97	118.75	104.03	53.85	81.33	39.35	29.98
Merged-chr7-19271966-5	chr7	19271447	19272447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282021)	promoter-TSS (NM_001282021)	-93.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	146.45	128.56	141.52	114.7	73.24	121.37	155.26	125.58	113.04
Merged-chr7-35057262-3	chr7	35056768	35057768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009884)	promoter-TSS (NM_009884)	-702.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	212.23	295.36	128.57	193.64	206.2	167.19	184.83	284.31	145.51
Merged-chr1-185204051-3	chr1	185203546	185204546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-122.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	167.04	178.32	98.05	217.93	208.06	153.52	242.92	334.28	162.38
Merged-chr13-41606486-3	chr13	41605977	41606977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	CpG	261.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	361.54	393.51	361.66	364.35	327.49	285.34	366.5	355.94	232.32
Merged-chr15-59743068-3	chr15	59742563	59743563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51896.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	76.66	53.45	47.17	99.18	37.32	64.3	62.31	38.91	34.97
Merged-chr10-118709117-1	chr10	118708617	118709617	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-152592.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	25.74	19.81	11.1	52.63	32.19	40.99	32.74	17.69	16.24
Merged-chr15-66561073-3	chr15	66560567	66561567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172514)	promoter-TSS (NM_172514)	-21.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	193.35	277.85	148.92	219.96	284.57	167.99	205.96	246.73	99.3
Merged-chr11-111290768-3	chr11	111290272	111291272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	224608.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	29.75	37.32	25.9	43.18	36.39	59.48	34.85	49.52	31.85
Merged-chr16-22108340-3	chr16	22107867	22108867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	54932.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	11.44	12.44	1.85	16.87	9.8	5.63	27.46	14.15	6.87
Merged-chr8-78509305-3	chr8	78508814	78509814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	-14.0	NM_001282109	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	246.56	284.3	132.27	192.29	222.99	178.44	238.7	269.28	138.65
Merged-chrX-163909002-3	chrX	163908527	163909527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026887)	promoter-TSS (NM_026887)	10.0	NM_001290379	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	56.63	64.97	60.12	47.9	55.51	90.02	66.54	83.57	61.83
Merged-chr13-24801304-4	chr13	24800839	24801839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-318.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	291.75	227.17	242.34	309.7	193.13	210.59	266.16	230.37	156.13
Merged-chr16-95931715-3	chr16	95931213	95932213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2636.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	44.05	30.87	24.97	47.9	40.59	55.46	64.43	27.86	27.48
Merged-chr4-134548286-3	chr4	134547787	134548787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 2 of 11)	MIRc|SINE|MIR	3879.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	96.11	79.25	72.15	102.56	80.24	76.36	155.26	155.2	79.32
Merged-chr15-88862440-2	chr15	88861921	88862921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	227.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	344.38	291.22	265.46	370.42	311.16	290.97	337.98	230.37	164.88
Merged-chr10-41303224-3	chr10	41302740	41303740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	1.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	109.26	151.14	102.67	109.98	154.88	123.78	117.24	186.59	107.42
Merged-chr8-72475213-3	chr8	72474707	72475707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	26.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	147.02	168.19	140.59	121.45	139.49	127.0	159.48	164.04	104.3
Merged-chr17-25016404-3	chr17	25015887	25016887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	301.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	258.57	224.86	155.39	206.46	192.2	187.28	168.99	236.56	140.52
Merged-chr12-80231627-3	chr12	80231157	80232157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	28714.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	114.98	90.31	100.82	73.54	48.05	87.61	51.75	53.06	66.2
Merged-chr6-39781890-3	chr6	39781391	39782391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29045.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	189.35	299.97	218.29	189.6	232.79	183.26	222.86	269.28	129.28
Merged-chr19-32637475-3	chr19	32636980	32637980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360403, intron 3 of 11)	intron (NM_001360403, intron 3 of 11)	17475.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	87.52	91.7	54.57	111.33	89.1	73.95	143.64	142.82	50.59
Merged-chr7-80647551-3	chr7	80647068	80648068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	11551.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	138.44	155.28	129.49	113.35	95.17	101.28	124.63	143.7	84.31
Merged-chr14-40924545-2	chr14	40924040	40925040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	MIR3|SINE|MIR	23669.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	34.9	44.24	46.25	37.11	48.98	44.21	38.02	30.95	35.6
Merged-chr7-140116486-3	chr7	140115987	140116987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053119)	promoter-TSS (NM_053119)	-64.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	112.12	128.56	124.87	107.95	135.75	131.02	155.26	169.35	82.44
Merged-chr15-79659075-3	chr15	79658564	79659564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-108.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	153.88	164.5	99.89	141.02	107.3	87.61	119.35	84.45	92.43
Merged-chr9-116376213-3	chr9	116375712	116376712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187032.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	33.18	34.1	14.8	38.46	46.65	39.39	16.9	7.52	11.24
Merged-chr1-135266093-3	chr1	135265593	135266593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 7 of 9)	intron (NM_001159624, intron 7 of 9)	-7621.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	38.33	27.19	19.42	51.28	19.59	32.15	61.26	42.01	30.6
Merged-chr11-68474723-3	chr11	68474225	68475225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 2 of 18)	intron (NM_177320, intron 2 of 18)	-28294.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	135.58	127.64	100.82	141.69	67.64	86.81	96.11	64.11	74.94
Merged-chr13-38960519-3	chr13	38960013	38961013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134060)	promoter-TSS (NM_134060)	24.0	NM_001170430	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	125.28	100.45	99.89	122.12	111.03	132.63	152.09	93.74	56.21
Merged-chr10-128493899-3	chr10	128493411	128494411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-25.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	435.9	327.16	285.81	361.65	279.44	248.37	383.4	413.43	174.87
Merged-chr5-151333291-3	chr5	151332799	151333799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35376.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	20.59	22.12	18.5	20.24	29.39	23.31	42.25	30.95	31.85
Merged-chr9-22313449-3	chr9	22312958	22313958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5820.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	136.72	191.23	89.72	138.99	109.16	109.32	136.25	188.36	91.81
Merged-chr8-11635816-3	chr8	11635316	11636316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-59.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	141.87	122.57	151.69	135.62	153.95	175.23	135.19	145.03	114.29
Merged-chr8-11341363-3	chr8	11340864	11341864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-28538.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	61.21	54.37	21.27	66.8	72.31	71.54	39.08	36.7	39.97
Merged-chr11-69410832-3	chr11	69410311	69411311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	2864.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	680.17	449.26	356.11	638.28	430.12	369.74	460.5	527.06	259.18
Merged-chr1-136127097-3	chr1	136126605	136127605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_046167)	TTS (NR_046167)	4078.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	37.76	29.03	12.02	45.21	40.59	19.29	78.16	70.3	26.23
Merged-chr5-114699170-3	chr5	114698656	114699656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-8221.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	269.44	122.11	117.47	259.09	97.5	165.58	264.05	214.45	139.27
Merged-chr7-127769847-3	chr7	127769354	127770354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198424)	promoter-TSS (NM_198424)	39.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	188.78	196.29	158.17	144.39	143.68	176.83	176.38	189.25	133.65
Merged-chr4-134097408-3	chr4	134096916	134097916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2343.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	312.91	278.31	194.24	229.4	143.22	163.97	249.26	330.3	149.89
Merged-chr16-24625728-3	chr16	24625207	24626207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-96148.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	366.69	355.26	159.09	336.01	315.36	176.83	282.0	387.34	132.4
Merged-chr1-192759636-2	chr1	192759127	192760127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	11592.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	30.32	16.13	19.42	0.67	1.4	2.41	11.62	9.29	9.99
Merged-chr11-103443960-3	chr11	103443453	103444453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-31289.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	65.21	72.34	61.05	76.92	82.11	61.89	76.05	97.28	51.84
Merged-chr7-43343353-3	chr7	43342856	43343856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7985.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	9.15	6.45	19.42	5.4	6.06	8.84	8.45	4.42	7.49
Merged-chr11-115641369-3	chr11	115640843	115641843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13048.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	149.31	86.63	61.05	159.23	75.11	55.46	106.67	103.91	69.32
Merged-chr17-12783418-3	chr17	12782914	12783914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-13708.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	17.16	7.37	6.47	8.1	4.67	4.82	16.9	5.75	5.0
Merged-chr17-25785445-3	chr17	25784930	25785930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026897)	promoter-TSS (NM_026897)	-92.0	NM_026897	68977.0	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	41.76	36.4	53.65	41.16	36.39	56.27	62.31	50.41	49.34
Merged-chr18-54902726-3	chr18	54902217	54903217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87463.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	73.22	86.63	68.45	82.99	81.17	74.75	99.28	106.56	59.33
Merged-chr2-146010916-3	chr2	146010431	146011431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76147.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	14.3	4.15	9.25	10.8	8.4	9.65	25.35	19.46	26.23
Merged-chr13-59822721-3	chr13	59822226	59823226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 1 of 27)	CpG	421.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	435.9	415.17	279.34	360.97	308.36	296.6	321.08	368.33	234.82
Merged-chr15-25282509-3	chr15	25282013	25283013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131251.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	88.67	76.95	44.4	123.47	129.69	85.2	117.24	132.21	63.08
Merged-chr2-120027516-3	chr2	120027009	120028009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114637)	promoter-TSS (NM_001114637)	26.0	NM_001114637	433466.0	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	30.89	30.87	35.15	35.09	35.45	32.96	45.42	47.31	39.35
Merged-chr5-88770466-3	chr5	88769947	88770947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 2 of 6)	intron (NM_007832, intron 2 of 6)	5434.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	150.45	184.31	101.74	167.33	138.55	135.04	213.35	270.61	146.14
Merged-chr16-17759642-3	chr16	17759142	17760142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	21.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	58.35	35.94	37.0	56.0	39.65	51.44	47.53	26.09	26.85
Merged-chr2-128698299-3	chr2	128697787	128698787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-628.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	63.5	33.18	29.6	53.98	34.06	42.6	50.7	50.41	14.99
Merged-chr6-56797756-3	chr6	56797254	56798254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145958)	promoter-TSS (NM_145958)	59.0	NM_001362210	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	307.76	252.97	339.46	349.5	274.77	251.59	310.52	269.28	238.57
Merged-chr1-173430539-3	chr1	173430050	173431050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	ORR1F|LTR|ERVL-MaLR	9946.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	85.24	67.27	43.47	74.22	44.32	42.6	78.16	85.78	48.71
Merged-chr6-140619927-3	chr6	140619405	140620405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2758.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	44.62	33.18	24.05	63.42	33.12	27.33	86.61	50.85	20.61
Merged-chr14-31386253-3	chr14	31385744	31386744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	31433.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	207.08	211.5	142.44	252.34	199.67	173.62	210.18	282.54	114.29
Merged-chr10-23851440-1	chr10	23850940	23851940	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011979)	promoter-TSS (NM_011979)	-22.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.86	2.3	2.77	1.35	0.93	3.22	29.57	22.55	11.87
Merged-chr8-126422461-3	chr8	126421976	126422976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174987)	promoter-TSS (NM_174987)	-25.0	NM_174987	67892.0	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	99.54	109.21	109.14	96.48	104.03	129.41	104.56	103.02	90.56
Merged-chr3-52047185-3	chr3	52046669	52047669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57837.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	144.16	122.11	69.37	120.1	136.22	87.61	132.02	165.37	74.94
Merged-chr12-55302679-3	chr12	55302199	55303199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	62.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	350.67	423.46	257.14	282.03	347.08	282.93	337.98	416.96	193.6
Merged-chr11-79871005-1	chr11	79870505	79871505	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91382.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	337.51	331.3	184.99	485.12	451.11	285.34	431.98	611.96	198.6
Merged-chr9-21313421-3	chr9	21312916	21313916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1083.0	NM_009678	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	4.0	3.23	2.77	5.4	1.87	6.43	3.17	3.1	5.0
Merged-chr5-64970076-3	chr5	64969587	64970587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026667)	promoter-TSS (NM_026667)	12.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	149.31	122.57	95.27	137.64	82.57	64.3	171.1	128.67	67.45
Merged-chr11-115690528-3	chr11	115690030	115691030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	9004.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	125.28	102.75	37.92	127.52	95.17	98.87	158.43	181.73	72.45
Merged-chr13-95845204-3	chr13	95844762	95845762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	PB1D10|SINE|Alu	46660.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	98.97	109.67	68.45	78.94	64.84	73.14	166.88	194.11	118.04
Merged-chr15-58211566-3	chr15	58211078	58212078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	3314.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	20.02	16.13	13.87	31.71	11.66	12.06	14.79	13.71	14.36
Merged-chr1-165681553-3	chr1	165681014	165682014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	26580.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	282.59	281.08	229.39	307.0	213.66	211.4	253.48	274.59	168.0
Merged-chr3-108017539-3	chr3	108017041	108018041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010358, intron 1 of 7)	intron (NM_010358, intron 1 of 7)	432.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	148.16	98.15	55.5	232.78	180.07	96.45	105.62	127.34	48.09
Merged-chr3-130730367-3	chr3	130729877	130730877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026724)	promoter-TSS (NM_026724)	21.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	255.71	233.16	111.92	227.38	227.66	147.9	210.18	175.1	120.53
Merged-chr19-57452932-3	chr19	57452431	57453431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028115)	promoter-TSS (NM_028115)	25.0	NM_028115	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	11.44	45.62	9.25	35.76	25.19	29.74	33.8	18.57	13.12
Merged-chr8-122567703-3	chr8	122567222	122568222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026014)	promoter-TSS (NM_026014)	-293.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	216.81	192.15	178.52	194.99	189.87	219.43	163.71	205.17	166.12
Merged-chr7-19321609-3	chr7	19321096	19322096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-11551.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	68.65	40.55	25.9	41.16	33.59	16.88	42.25	41.12	24.36
Merged-chr6-116004909-3	chr6	116004415	116005415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9910.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	62.35	53.91	49.02	68.15	37.32	38.58	28.52	42.01	23.11
Merged-chr7-128611201-3	chr7	128610713	128611713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-152.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	33.75	26.73	9.25	31.71	26.12	37.78	29.57	15.92	14.99
Merged-chr4-105718745-3	chr4	105718246	105719246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-522467.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	54.35	79.25	47.17	73.54	69.98	62.7	83.44	80.47	55.58
Merged-chr13-95888845-3	chr13	95888327	95889327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	3095.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	186.49	189.38	106.37	288.1	243.98	208.98	274.61	315.71	126.15
Merged-chr7-25719061-3	chr7	25718532	25719532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	21.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	147.02	139.62	126.72	164.63	138.09	154.33	197.51	198.53	59.33
Merged-chr3-38187666-3	chr3	38187176	38188176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20443.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	14.3	13.36	7.4	21.59	15.86	20.09	39.08	20.78	19.98
Merged-chr2-170330013-3	chr2	170329517	170330517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26344.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	157.31	104.6	107.29	157.88	91.44	106.1	145.75	92.41	105.55
Merged-chr8-57531162-3	chr8	57530680	57531680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 11 of 11)	intron (NM_001167981, intron 11 of 11)	19337.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	50.34	60.82	39.77	56.68	70.44	66.71	52.81	53.06	34.35
Merged-chr16-30776456-3	chr16	30775958	30776958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176735.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	57.78	58.06	64.75	86.36	79.31	86.81	113.01	129.55	72.45
Merged-chrX-36745030-3	chrX	36744524	36745524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 1 of 3)	intron (NR_075097, intron 1 of 3)	1392.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	32.61	39.17	63.82	33.74	32.66	23.31	40.14	32.28	34.35
Merged-chr16-55757723-2	chr16	55757225	55758225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	64413.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	125.28	112.89	81.4	109.3	89.1	85.2	85.55	102.58	62.45
Merged-chr2-33131020-4	chr2	33130502	33131502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355200)	promoter-TSS (NM_001355200)	-383.0	NM_001355200	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	33.75	22.12	17.57	37.11	14.93	29.74	32.74	28.3	21.86
Merged-chr1-36272282-1	chr1	36271782	36272782	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1143.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	147.59	147.91	128.57	146.41	113.36	153.52	208.07	173.77	119.91
Merged-chr4-8842505-3	chr4	8842012	8843012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 18 of 36)	intron (NM_001355382, intron 18 of 36)	91188.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	101.83	140.08	81.4	121.45	105.9	105.3	158.43	182.62	98.05
Merged-chr19-60861442-3	chr19	60860941	60861941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362384)	promoter-TSS (NM_001362384)	-13.0	NM_053198	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	58.35	63.59	49.95	47.23	56.45	72.34	52.81	66.33	24.98
Merged-chr1-159187025-3	chr1	159186528	159187528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45172.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	42.9	52.99	32.37	64.1	68.11	69.13	32.74	45.99	57.46
Merged-chr4-53149061-3	chr4	53148563	53149563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	10832.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	117.27	71.88	39.77	161.26	110.56	114.14	142.59	144.59	71.2
Merged-chr5-65537150-3	chr5	65536631	65537631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310618)	promoter-TSS (NM_001310618)	-114.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	406.73	327.16	258.06	383.24	236.99	303.03	323.19	295.81	219.83
Merged-chr2-90576438-3	chr2	90575926	90576926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4221.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	213.38	276.01	164.64	209.16	214.13	176.03	257.71	283.43	161.13
Merged-chr3-96278186-3	chr3	96277695	96278695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8495.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	24.03	21.66	18.5	39.13	27.06	19.29	21.12	14.59	12.49
Merged-chr16-85122127-3	chr16	85121606	85122606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	MLT1F|LTR|ERVL-MaLR	51601.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	33.18	24.42	20.35	43.18	27.99	37.78	36.97	23.43	14.36
Merged-chr18-82902748-3	chr18	82902268	82903268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8111.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	33.18	12.44	18.5	28.34	17.73	19.29	20.07	15.03	16.24
Merged-chr2-109280722-3	chr2	109280226	109281226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139303)	promoter-TSS (NM_139303)	-12.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	211.66	262.65	142.44	163.96	200.13	143.88	143.64	216.66	129.28
Merged-chr19-47432614-3	chr19	47432113	47433113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	31798.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	131.57	94.92	64.75	136.97	88.17	91.63	115.12	105.24	55.58
Merged-chr12-85598229-3	chr12	85597726	85598726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205052)	promoter-TSS (NM_001205052)	-879.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	320.35	258.04	182.22	287.43	201.07	249.17	242.92	256.01	163.0
Merged-chr17-47221482-5	chr17	47220983	47221983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-8747.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	232.83	201.82	128.57	244.25	202.93	124.59	224.97	240.54	126.15
Merged-chr11-85374929-1	chr11	85374429	85375429	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 6 of 25)	intron (NM_138681, intron 6 of 25)	21765.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	2.29	4.15	0.0	4.72	7.0	9.65	3.17	1.77	2.5
Merged-chr7-96477421-3	chr7	96476918	96477918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-135454.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	94.39	108.75	106.37	104.58	65.78	96.45	47.53	52.18	51.84
Merged-chr19-47067666-3	chr19	47067147	47068147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177342)	promoter-TSS (NM_177342)	-101.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	140.73	96.3	106.37	101.88	90.04	103.69	130.97	109.66	63.7
Merged-chr1-43811171-3	chr1	43810665	43811665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	16543.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	58.35	61.28	59.2	55.33	58.78	88.42	63.37	61.02	46.22
Merged-chr15-78913835-3	chr15	78913320	78914320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020271)	promoter-TSS (NM_020271)	-99.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	4.58	2.76	7.4	6.07	3.27	1.61	7.39	2.21	1.25
Merged-chr3-89459147-3	chr3	89458651	89459651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026784)	promoter-TSS (NM_026784)	33.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	45.19	49.76	38.85	52.63	52.25	31.35	51.75	53.06	39.97
Merged-chr8-14675676-3	chr8	14675171	14676171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-212865.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	33.75	38.71	29.6	58.7	45.72	40.99	42.25	38.47	26.85
Merged-chr2-19579374-1	chr2	19578874	19579874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25464.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	59.49	63.59	33.3	4.05	3.27	0.8	5.28	2.21	4.37
Merged-chr12-32890642-3	chr12	32890131	32891131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63158.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	103.54	83.86	42.55	88.39	58.78	82.79	117.24	113.19	73.69
Merged-chr10-79854441-3	chr10	79853947	79854947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	15.0	NM_001283013	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	249.99	227.17	176.67	282.71	237.45	208.98	273.55	320.57	108.04
Merged-chr1-10233074-3	chr1	10232579	10233579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102430)	promoter-TSS (NM_001102430)	-409.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	109.83	58.06	74.0	99.86	38.72	69.93	90.83	42.89	47.46
Merged-chr3-88685750-3	chr3	88685242	88686242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-45.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	314.63	326.7	287.66	315.77	273.37	256.41	217.57	332.51	219.21
Merged-chr1-86394481-3	chr1	86393993	86394993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5132.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	95.53	76.49	82.32	93.11	84.9	54.66	82.38	112.75	55.58
Merged-chr11-48853790-5	chr11	48853135	48854135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Thr-ACA|tRNA|tRNA	16164.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	98.39	92.62	57.35	84.34	53.65	60.28	58.09	54.39	30.6
Merged-chr4-3744330-3	chr4	3743834	3744834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	29370.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	168.18	152.98	90.65	145.74	78.37	75.56	134.14	154.32	69.95
Merged-chr18-67389404-3	chr18	67388933	67389933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1298.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	58.35	39.63	20.35	62.75	31.26	30.54	44.36	26.97	29.98
Merged-chr2-6323282-3	chr2	6322790	6323790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	CpG	533.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	135.58	94.92	84.17	155.19	99.37	71.54	118.29	75.61	42.47
Merged-chr2-160171292-3	chr2	160170778	160171778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154625.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	37.18	22.12	19.42	49.25	25.66	24.11	34.85	17.24	18.74
Merged-chr6-24664260-3	chr6	24663781	24664781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	714.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	322.64	358.03	263.61	300.92	359.68	294.99	269.33	259.55	188.61
Merged-chr16-5011410-3	chr16	5010922	5011922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133185, intron 5 of 10)	intron (NM_133185, intron 5 of 10)	2131.0	NM_133185	66049.0	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	40.62	30.41	23.12	41.83	25.66	26.53	20.07	17.69	14.99
Merged-chr11-21048883-3	chr11	21048374	21049374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42450.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	114.41	90.31	46.25	105.26	99.37	84.4	80.27	61.46	71.82
Merged-chr8-72008542-3	chr8	72008045	72009045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	1081.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	20.02	26.73	30.52	14.84	5.13	25.72	26.4	19.01	29.98
Merged-chr14-67275526-3	chr14	67275036	67276036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	39175.0	NM_001037931	628416.0	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	16.59	18.89	3.7	16.19	5.6	15.27	15.84	14.15	13.74
Merged-chr9-3029760-3	chr9	3029260	3030260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	8983.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	14.3	80.64	9.25	18.89	78.84	8.84	29.57	28.3	2.5
Merged-chr1-193130246-3	chr1	193129750	193130750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151719)	promoter-TSS (NR_151719)	1.0	NM_145415	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	32.04	27.65	24.05	26.31	35.45	32.96	49.64	35.82	23.11
Merged-chr17-28294609-3	chr17	28294104	28295104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-18926.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	27.46	24.88	34.22	38.46	42.92	41.8	60.2	51.29	22.48
Merged-chr2-163419633-3	chr2	163419119	163420119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025699)	promoter-TSS (NM_025699)	-149.0	NM_025699	66680.0	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	179.62	167.73	207.19	242.9	196.87	188.09	182.72	154.76	81.81
Merged-chr10-95940634-3	chr10	95940114	95941114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001932)	promoter-TSS (NM_001001932)	-49.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	212.8	157.59	134.12	228.73	176.81	176.03	216.52	168.02	69.95
Merged-chr14-20655023-4	chr14	20654545	20655545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021508, intron 2 of 5)	intron (NM_021508, intron 2 of 5)	1495.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	61.78	64.51	61.97	87.71	88.64	118.16	64.43	73.84	69.32
Merged-chr2-137881196-3	chr2	137880703	137881703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-375381.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	8.58	10.6	7.4	17.54	6.06	19.29	8.45	5.75	13.74
Merged-chr5-137076309-3	chr5	137075810	137076810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4038.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	30.32	15.21	14.8	14.84	14.93	20.09	41.19	28.3	17.49
Merged-chr1-181257811-3	chr1	181257309	181258309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45831.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	64.64	80.18	85.1	75.57	64.84	90.02	52.81	76.05	39.35
Merged-chr19-56713872-3	chr19	56713355	56714355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8517.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	37.18	30.87	11.1	49.25	34.52	35.37	54.92	33.6	14.99
Merged-chr9-65908953-3	chr9	65908473	65909473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	-37.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	76.08	51.61	63.82	88.39	29.39	69.13	70.76	55.27	39.97
Merged-chr6-17629253-3	chr6	17628744	17629744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7766.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	107.55	116.58	116.54	74.22	79.31	98.06	103.51	132.21	94.93
Merged-chr11-85774891-3	chr11	85774401	85775401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046194, intron 1 of 2)	intron (NR_046194, intron 1 of 2)	779.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	8.58	5.53	9.25	6.07	3.73	6.43	5.28	4.42	0.0
Merged-chr6-125411231-3	chr6	125410719	125411719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30715.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	57.78	54.83	31.45	66.12	41.99	21.7	30.63	47.75	25.61
Merged-chr14-73442153-3	chr14	73441657	73442657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56868.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	98.39	65.43	58.27	99.18	48.98	69.13	70.76	53.06	63.08
Merged-chr17-80224545-3	chr17	80224070	80225070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355458, exon 1 of 3)	5' UTR (NM_001355458, exon 1 of 3)	119.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	88.67	73.26	48.1	120.1	111.03	94.04	126.74	119.39	78.07
Merged-chr7-19816433-3	chr7	19815889	19816889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	6366.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	137.86	108.75	66.6	110.65	90.04	81.18	121.46	110.1	81.19
Merged-chr8-123443049-3	chr8	123442561	123443561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281803)	promoter-TSS (NM_001281803)	105.0	NM_054046	23854.0	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	72.65	76.95	64.75	82.99	59.71	64.3	60.2	66.77	42.47
Merged-chr6-72165048-3	chr6	72164564	72165564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41867.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	65.79	61.28	61.05	58.03	51.78	57.07	67.6	64.56	59.33
Merged-chr9-7337303-3	chr9	7336788	7337788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7109.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	64.07	73.26	77.7	76.92	73.71	87.61	67.6	61.02	64.33
Merged-chr2-101827330-1	chr2	101826830	101827830	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11650.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.0	3.69	7.4	12.14	9.33	5.63	3.17	8.4	6.25
Merged-chr18-76152760-1	chr18	76152260	76153260	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17792.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	1.14	3.23	5.55	0.67	2.33	1.61	6.34	2.65	1.87
Merged-chr16-91548158-3	chr16	91547654	91548654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	1060.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	247.13	193.53	126.72	180.82	162.34	139.86	262.99	352.85	155.51
Merged-chr12-4843370-3	chr12	4842886	4843886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173416)	promoter-TSS (NM_173416)	83.0	NM_001170858	238037.0	Mm.146087	NM_173416	ENSMUSG00000051721	Wdcp	A430092C04	WD repeat and coiled coil containing	protein-coding	97.25	102.29	38.85	107.95	104.5	64.3	98.23	124.25	44.34
Merged-chr10-40073806-3	chr10	40073305	40074305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	RSINE1|SINE|B4	-48537.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	104.11	80.18	68.45	107.28	100.77	82.79	57.03	76.94	46.84
Merged-chrUn_JH584304-53481-1	chrUn_JH584304	52981	53981	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	6208.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	29.57	16.36	0.0
Merged-chr17-42883140-3	chr17	42882620	42883620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	42.9	35.02	37.92	42.51	20.06	36.97	16.9	24.32	22.48
Merged-chr14-99104680-1	chr14	99104180	99105180	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029320, intron 2 of 17)	intron (NM_029320, intron 2 of 17)	-4910.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	6.29	7.37	11.1	5.4	5.6	14.47	3.17	8.4	5.62
Merged-chr1-167394310-4	chr1	167393794	167394794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	-497.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	32.04	49.76	35.15	49.93	39.65	40.99	41.19	57.04	28.1
Merged-chr18-46959003-3	chr18	46958509	46959509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 1 of 6)	CpG	133.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	54.35	56.22	72.15	67.47	80.71	94.04	79.21	59.25	37.47
Merged-chr11-60220575-3	chr11	60220039	60221039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011480)	promoter-TSS (NM_011480)	88.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	253.42	230.85	198.87	304.3	268.24	223.45	356.99	313.5	143.02
Merged-chr15-101160228-1	chr15	101159728	101160728	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-13844.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	4.0	5.53	12.95	8.1	4.2	16.88	33.8	23.43	25.61
Merged-chr18-10181469-3	chr18	10180977	10181977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009071, exon 1 of 33)	5' UTR (NM_009071, exon 1 of 33)	315.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	319.21	363.56	277.49	266.51	328.89	272.48	270.38	257.34	219.21
Merged-chr2-153145530-3	chr2	153145048	153146048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	L1MB7|LINE|L1	-15753.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	37.76	44.7	33.3	59.38	33.12	57.07	39.08	35.82	44.34
Merged-chr14-62001765-3	chr14	62001257	62002257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	291222.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	93.82	87.09	46.25	127.52	90.5	80.38	79.21	70.75	34.35
Merged-chr14-30479559-3	chr14	30479077	30480077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	12.0	NM_133761	75901.0	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	60.07	62.67	47.17	58.7	64.84	87.61	101.39	84.45	28.73
Merged-chr15-80233968-3	chr15	80233474	80234474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178719)	promoter-TSS (NM_178719)	-106.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	128.14	131.32	113.77	124.82	108.23	114.14	140.47	149.01	61.2
Merged-chr11-118212861-3	chr11	118212367	118213367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112700)	promoter-TSS (NM_001112700)	-125.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	168.76	113.81	155.39	215.91	98.9	159.15	123.57	96.39	84.94
Merged-chr1-9893316-3	chr1	9892816	9893816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133220, intron 17 of 17)	intron (NM_133220, intron 17 of 17)	-15322.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	46.34	41.47	45.32	85.69	39.65	75.56	61.26	57.92	50.59
Merged-chr8-13645115-3	chr8	13644612	13645612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	L1MB8|LINE|L1	32475.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	59.49	55.75	75.85	59.38	55.51	62.7	55.98	56.16	39.97
Merged-chr1-144248407-3	chr1	144247904	144248904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 2 of 4)	intron (NM_015811, intron 2 of 4)	700.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	77.8	158.05	52.72	136.29	148.35	132.63	138.36	166.7	59.33
Merged-chr5-92083048-3	chr5	92082558	92083558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080797)	promoter-TSS (NM_001080797)	-141.0	NM_001080797	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	189.92	215.19	228.46	170.7	176.81	208.98	180.61	187.92	160.5
Merged-chr13-45442600-3	chr13	45442082	45443082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52840.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	101.83	88.93	50.87	111.33	71.84	84.4	89.78	107.45	33.1
Merged-chr14-22759795-3	chr14	22759283	22760283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-216985.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	22.31	17.97	18.5	20.24	17.73	6.43	7.39	15.03	22.48
Merged-chr9-65579072-3	chr9	65578564	65579564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	MIR3|SINE|MIR	1023.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	287.17	233.62	166.49	325.89	215.99	197.73	274.61	330.3	175.49
Merged-chr11-4704432-5	chr11	4703968	4704968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356391)	promoter-TSS (NM_001356391)	-124.0	NM_197979	66152.0	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	29.17	55.75	53.65	51.28	50.85	51.44	96.11	65.44	46.22
Merged-chr15-85879280-3	chr15	85878800	85879800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028063)	promoter-TSS (NM_028063)	-27.0	NM_028063	72026.0	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	29.17	39.17	38.85	45.21	45.72	44.21	44.36	40.24	26.85
Merged-chr1-150393214-3	chr1	150392722	150393722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145511)	promoter-TSS (NM_145511)	-142.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	280.88	239.61	208.11	246.27	232.32	237.92	250.32	241.87	174.87
Merged-chr17-86151102-3	chr17	86150607	86151607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5932.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	3.43	3.23	2.77	6.75	2.33	0.0	4.22	1.77	2.5
Merged-chr2-173739339-3	chr2	173738833	173739833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	B1F|SINE|Alu	1762.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	83.52	60.82	63.82	133.59	110.56	79.58	156.32	161.39	71.82
Merged-chr10-98878018-3	chr10	98877522	98878522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36620.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	119.56	101.37	61.05	147.76	79.31	86.01	119.35	119.39	66.82
Merged-chr1-36558259-3	chr1	36557741	36558741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304330)	promoter-TSS (NM_001304330)	140.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	162.46	136.39	175.74	122.12	93.77	111.73	145.75	122.48	101.8
Merged-chr18-80170086-3	chr18	80169595	80170595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16144.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	183.63	204.13	149.84	190.27	204.33	177.64	204.9	248.5	119.91
Merged-chr2-76648176-3	chr2	76647689	76648689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011871)	promoter-TSS (NM_011871)	-195.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	54.92	23.5	51.8	51.95	37.79	45.01	49.64	38.47	33.72
Merged-chr1-52800513-3	chr1	52800008	52801008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17180.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	115.55	88.93	86.02	64.77	53.65	45.82	111.96	96.39	84.94
Merged-chr14-30196478-3	chr14	30195971	30196971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	157015.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.0	6.91	7.4	8.1	6.53	8.04	4.22	6.63	2.5
Merged-chr5-113918874-3	chr5	113918373	113919373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10167.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	125.85	95.84	53.65	174.08	164.21	159.95	68.65	82.69	49.34
Merged-chr11-70237863-3	chr11	70237382	70238382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177603)	promoter-TSS (NM_001177603)	32.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	330.07	248.82	247.89	316.44	248.18	234.71	260.88	274.59	150.51
Merged-chr8-40584810-3	chr8	40584313	40585313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 6 of 13)	intron (NM_001040699, intron 6 of 13)	49979.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	12.59	6.45	3.7	19.57	4.67	11.25	35.91	40.68	5.0
Merged-chr19-6840696-3	chr19	6840211	6841211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019924)	promoter-TSS (NM_019924)	-84.0	NM_019924	56613.0	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	75.51	66.35	37.92	89.06	71.38	90.83	79.21	94.62	36.22
Merged-chr2-130563746-3	chr2	130563255	130564255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040348)	promoter-TSS (NR_040348)	-2.0	NM_207207	99045.0	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	70.36	64.05	69.37	87.04	100.3	99.67	92.94	77.82	47.46
Merged-chr4-56953337-3	chr4	56952835	56953835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5906.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	12.59	5.53	12.02	7.42	4.67	9.65	3.17	4.42	5.0
Merged-chrX-163845632-3	chrX	163845139	163846139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63378.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	24.03	11.98	12.95	10.12	12.13	19.29	14.79	8.4	13.74
Merged-chr16-16525648-3	chr16	16525141	16526141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1770.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	147.59	160.81	110.99	128.2	89.1	85.2	117.24	95.51	73.69
Merged-chr8-26977077-3	chr8	26976574	26977574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101502)	promoter-TSS (NM_001101502)	-262.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	214.52	205.51	195.17	188.92	188.0	210.59	201.73	163.16	150.51
Merged-chr2-104732264-3	chr2	104731738	104732738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144804, intron 1 of 8)	intron (NM_144804, intron 1 of 8)	10563.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	115.55	122.57	98.05	151.14	141.35	127.8	107.73	117.62	88.06
Merged-chr8-84661303-1	chr8	84660803	84661803	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010499)	TTS (NM_010499)	1549.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	172.19	144.69	100.82	153.84	89.1	87.61	143.64	112.75	84.31
Merged-chr8-71747317-2	chr8	71746823	71747823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21642.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	10.87	6.45	19.42	3.37	3.27	3.22	22.18	11.94	5.0
Merged-chr11-115188841-3	chr11	115188340	115189340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	1353.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	508.56	377.38	244.19	510.09	402.13	263.64	392.9	476.66	189.23
Merged-chr12-76765654-3	chr12	76765148	76766148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154884, intron 1 of 2)	CpG	110.0	NM_206534	211151.0	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	296.32	293.06	113.77	222.66	260.31	151.92	306.29	260.44	106.17
Merged-chr8-3314016-3	chr8	3313512	3314512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34395.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	42.33	52.53	46.25	43.18	22.39	45.01	38.02	32.28	44.97
Merged-chr15-62057628-3	chr15	62057129	62058129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	L1MB4|LINE|L1	18372.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	141.87	147.91	125.79	143.04	115.23	121.37	172.16	184.83	88.06
Merged-chr14-60205199-3	chr14	60204699	60205699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362440)	TTS (NM_001362440)	23716.0	NR_030458	751526.0		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	20.02	26.26	9.25	37.78	27.06	16.88	14.79	14.59	3.12
Merged-chr5-125183786-1	chr5	125183286	125184286	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4572.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	7.44	6.91	3.7	12.82	19.13	10.45	3.17	1.77	3.75
Merged-chr2-98667154-3	chr2	98666683	98667683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199526.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	14652.01	52556.12	9050.67	19846.82	60253.3	9556.24	41526.04	30831.88	10278.48
Merged-chr1-85895698-3	chr1	85895196	85896196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	1186.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	245.41	211.5	134.12	218.61	134.82	196.12	257.71	244.52	125.53
Merged-chr11-121713732-3	chr11	121713198	121714198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 2 of 3)	intron (NM_144797, intron 2 of 3)	11271.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	100.68	122.11	102.67	80.29	78.37	67.52	78.16	93.74	44.97
Merged-chrX-73966454-3	chrX	73965983	73966983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008224)	promoter-TSS (NM_008224)	-126.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	213.95	240.99	144.29	204.44	187.54	161.56	203.84	252.92	96.18
Merged-chr15-67481907-3	chr15	67481393	67482393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	255124.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	33.75	31.33	36.07	35.76	22.39	33.76	46.47	44.22	30.6
Merged-chr18-25487150-3	chr18	25486640	25487640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362310, intron 11 of 12)	C-rich|Low_complexity|Low_complexity	192608.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.86	2.3	1.85	8.1	8.4	13.66	8.45	4.86	8.74
Merged-chr5-147063506-2	chr5	147063023	147064023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	13049.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	308.91	354.8	142.44	272.59	299.96	217.83	6.34	20.34	7.49
Merged-chr2-30807749-3	chr2	30807255	30808255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356435)	promoter-TSS (NM_001356435)	-213.0	NM_001356435	66617.0	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	183.06	151.6	91.57	180.15	151.62	96.45	136.25	109.66	45.59
Merged-chr8-104571200-3	chr8	104570704	104571704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20264.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	17.73	24.42	16.65	34.41	20.06	23.31	31.69	25.65	18.74
Merged-chr1-155076136-3	chr1	155075625	155076625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	7139.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	73.22	37.32	34.22	97.83	59.25	49.83	55.98	43.33	21.86
Merged-chr12-17544762-3	chr12	17544247	17545247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013614)	promoter-TSS (NM_013614)	-126.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	127.0	125.33	129.49	176.78	115.23	134.23	146.81	98.6	59.95
Merged-chrUn_JH584304-32488-1	chrUn_JH584304	31988	32988	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27201.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	72.88	35.82	0.0
Merged-chr13-5635182-3	chr13	5634696	5635696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	222896.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.58	6.91	9.25	4.72	4.2	1.61	5.28	4.42	0.0
Merged-chr4-63424266-3	chr4	63423775	63424775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008792, intron 7 of 11)	intron (NM_001008792, intron 7 of 11)	-20830.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	17.73	13.36	5.55	16.87	10.26	9.65	19.01	14.15	9.99
Merged-chr4-82859640-3	chr4	82859136	82860136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026647)	promoter-TSS (NM_026647)	37.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	97.82	82.48	74.92	70.17	50.85	45.01	111.96	90.2	77.44
Merged-chr2-154314086-3	chr2	154313574	154314574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001025574, exon 7 of 15)	exon (NM_001025574, exon 7 of 15)	6830.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	12.59	21.66	20.35	57.35	43.39	20.9	34.85	28.74	11.24
Merged-chr16-44120322-2	chr16	44119822	44120822	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18937.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	241.98	262.19	113.77	280.68	272.44	150.31	273.55	260.88	105.55
Merged-chr5-8368149-3	chr5	8367605	8368605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098225)	promoter-TSS (NM_001098225)	55.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	9.72	5.99	23.12	12.82	9.33	8.04	3.17	1.77	3.75
Merged-chr8-71507805-3	chr8	71507291	71508291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032398, exon 3 of 6)	exon (NM_032398, exon 3 of 6)	3978.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	20.02	16.13	2.77	22.94	8.4	9.65	17.96	16.8	9.99
Merged-chr19-4113317-3	chr19	4112834	4113834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276284)	TTS (NM_001276284)	8241.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	228.25	221.64	187.77	177.45	222.06	148.7	161.6	228.16	114.91
Merged-chr9-56098004-4	chr9	56097470	56098470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	7994.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	35.47	22.58	29.6	25.64	23.79	44.21	51.75	44.66	33.72
Merged-chr11-54956051-3	chr11	54955527	54956527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199275, exon 2 of 19)	5' UTR (NM_001199275, exon 2 of 19)	6913.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	279.73	252.05	170.19	261.79	208.06	221.85	272.5	242.75	139.89
Merged-chr10-93365107-3	chr10	93364595	93365595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28884.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	79.52	53.45	51.8	103.23	62.51	64.3	10.56	8.4	5.0
Merged-chr4-129640951-5	chr4	129640435	129641435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005506)	promoter-TSS (NM_001005506)	-130.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	81.23	72.34	50.87	65.45	53.65	75.56	60.2	75.61	39.35
Merged-chr5-53540016-3	chr5	53539504	53540504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15775.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.29	8.29	7.4	6.75	6.06	6.43	5.28	5.75	3.75
Merged-chr7-126503532-3	chr7	126503020	126504020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183020)	promoter-TSS (NM_183020)	-83.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	286.03	218.87	279.34	265.16	242.58	285.34	222.86	193.67	163.0
Merged-chr6-128845517-3	chr6	128845019	128846019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19204.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	29.75	31.79	31.45	28.34	14.93	27.33	29.57	25.2	42.47
Merged-chr5-135702787-3	chr5	135702290	135703290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	L1MC4a|LINE|L1	13645.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	53.77	54.83	28.67	92.44	81.64	68.32	64.43	74.73	43.09
Merged-chr4-33282541-3	chr4	33282052	33283052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27759.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	68.65	74.19	55.5	56.68	48.98	37.78	63.37	52.18	33.72
Merged-chr8-18846938-3	chr8	18846441	18847441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026792, intron 1 of 7)	CpG	662.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	179.62	150.68	138.74	159.23	161.41	186.48	180.61	156.09	92.43
Merged-chr17-31074825-3	chr17	31074350	31075350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17156.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	256.85	239.61	183.14	336.68	268.71	260.43	314.74	392.2	139.89
Merged-chr4-36014287-3	chr4	36013783	36014783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-169079.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	22.31	28.57	21.27	42.51	32.66	60.28	53.87	54.83	28.1
Merged-chr2-117405634-3	chr2	117405119	117406119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-62742.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	53.2	60.82	56.42	58.03	33.59	66.71	78.16	53.06	59.95
Merged-chr16-32914192-3	chr16	32913682	32914682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310674)	promoter-TSS (NM_001310674)	82.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	290.03	250.21	190.54	255.04	194.53	178.44	233.42	178.19	106.17
Merged-chr17-29111512-2	chr17	29111000	29112000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17731.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	16.59	9.68	9.25	13.49	7.46	9.65	0.0	2.65	0.0
Merged-chr10-51597426-3	chr10	51596915	51597915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-6955.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	6.86	6.45	3.7	10.8	13.06	5.63	5.28	4.42	5.0
Merged-chr4-132078554-3	chr4	132078061	132079061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3248.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	104.11	106.9	81.4	97.83	73.71	83.59	114.07	119.39	63.7
Merged-chr3-133093131-3	chr3	133092623	133093623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-1084.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	133.29	169.57	80.47	147.76	155.35	102.08	109.84	160.51	78.69
Merged-chr2-21205717-3	chr2	21205221	21206221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	-3.0	NM_001001297	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	172.19	142.38	49.02	132.24	88.64	63.5	79.21	66.77	52.46
Merged-chr10-128259099-3	chr10	128258592	128259592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	4961.0	NM_133996	28194.0	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	21.17	21.2	21.27	24.29	19.13	21.7	16.9	18.13	8.74
Merged-chr4-144906661-3	chr4	144906158	144907158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	13521.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	39.47	40.09	42.55	58.03	59.25	76.36	57.03	42.89	52.46
Merged-chr18-65684029-3	chr18	65683542	65684542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 7 of 8)	intron (NM_001361052, intron 7 of 8)	-14226.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	210.52	145.61	104.52	149.79	93.3	113.33	143.64	131.77	66.2
Merged-chr16-16146824-3	chr16	16146324	16147324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146068)	promoter-TSS (NM_146068)	27.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	20.59	12.44	16.65	23.62	15.39	24.11	23.24	18.13	16.24
Merged-chr12-73907869-3	chr12	73907356	73908356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010431)	promoter-TSS (NM_010431)	-11.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	169.33	166.34	120.24	198.37	220.66	171.21	237.64	202.51	130.53
Merged-chr6-29474053-3	chr6	29473550	29474550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001145360)	TTS (NM_001145360)	2613.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	64.64	48.38	63.82	53.3	65.31	97.26	72.88	91.53	41.84
Merged-chr17-10359602-3	chr17	10359113	10360113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35011.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	207.08	165.42	79.55	198.37	160.01	116.55	158.43	148.57	63.7
Merged-chr7-113637894-1	chr7	113637394	113638394	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-72907.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	5.15	3.23	7.4	9.45	4.67	14.47	6.34	3.54	5.0
Merged-chr17-28694888-3	chr17	28694382	28695382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	2314.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	126.42	113.35	57.35	78.27	49.45	55.46	62.31	78.26	59.33
Merged-chr8-122376518-3	chr8	122376007	122377007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310650)	promoter-TSS (NM_001310650)	-102.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	141.87	122.11	124.87	118.75	97.5	75.56	152.09	79.15	69.32
Merged-chr9-57640641-3	chr9	57640160	57641160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	4993.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	28.03	41.01	52.72	36.43	42.92	65.11	58.09	76.49	45.59
Merged-chr10-121461545-3	chr10	121461041	121462041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	14709.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	265.43	270.02	175.74	304.97	240.25	213.81	170.05	149.45	73.69
Merged-chr19-4625637-3	chr19	4625111	4626111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023131)	promoter-TSS (NM_023131)	6.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	128.71	143.3	121.17	146.41	114.76	117.35	172.16	137.07	83.06
Merged-chr4-66796951-3	chr4	66796469	66797469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30582.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	79.52	69.58	56.42	77.59	70.91	53.05	50.7	64.56	20.61
Merged-chr5-95898128-3	chr5	95897625	95898625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58814.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	10.87	27.19	15.72	19.57	23.79	13.66	17.96	7.96	16.24
Merged-chr2-34785452-1	chr2	34784952	34785952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145522, intron 5 of 7)	ID_B1|SINE|B4	13362.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	7.44	2.3	0.0	0.67	1.4	4.82	2.11	0.88	1.25
Merged-chr17-24550443-1	chr17	24549943	24550943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013630, exon 1 of 46)	exon (NM_013630, exon 1 of 46)	493.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	154.45	120.73	147.99	141.69	111.5	104.49	104.56	72.07	75.57
Merged-chr9-35124450-3	chr9	35123939	35124939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027030)	TTS (NM_027030)	-7575.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	141.3	146.53	115.62	142.37	78.37	151.92	129.91	131.77	111.79
Merged-chr14-51942423-3	chr14	51941916	51942916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19643.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	147.02	205.51	74.0	97.83	103.1	94.85	46.47	50.85	38.1
Merged-chr12-111413520-3	chr12	111413028	111414028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3902.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	7.44	3.69	0.0	4.72	1.4	0.0	2.11	2.65	2.5
Merged-chr11-3105524-3	chr11	3105047	3106047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18474.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	28.03	57.6	58.27	37.78	53.65	41.8	119.35	92.86	72.45
Merged-chr19-42001813-3	chr19	42001322	42002322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	20059.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	217.38	168.65	100.82	167.33	126.42	152.72	168.99	170.68	107.42
Merged-chr10-85871847-3	chr10	85871337	85872337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	6.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	80.66	84.78	54.57	64.77	57.85	67.52	76.05	63.23	35.6
Merged-chr7-139235033-3	chr7	139234546	139235546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027164, intron 8 of 10)	intron (NM_027164, intron 8 of 10)	-13436.0	NM_001033206	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	27.46	23.5	27.75	33.74	23.33	40.19	19.01	9.73	12.49
Merged-chr11-4661592-3	chr11	4661109	4662109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	23816.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	60.64	59.44	40.7	59.38	59.71	56.27	55.98	65.0	41.22
Merged-chr15-97821084-3	chr15	97820578	97821578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	URR1B|DNA|hAT-Charlie	-6215.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	72.65	33.18	24.05	80.97	31.72	19.29	27.46	20.78	9.99
Merged-chr7-51879419-1	chr7	51878919	51879919	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008087, intron 1 of 7)	intron (NM_008087, intron 1 of 7)	452.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	3.43	3.23	8.32	2.02	1.4	1.61	17.96	7.07	9.37
Merged-chr8-124231301-3	chr8	124230809	124231809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139272)	promoter-TSS (NM_139272)	-85.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	44.62	43.77	94.35	51.28	36.39	74.75	68.65	59.25	87.43
Merged-chr9-43743812-1	chr9	43743312	43744312	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021424)	promoter-TSS (NM_021424)	-764.0	NM_021424	58235.0	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	7.44	2.3	1.85	4.72	3.73	1.61	9.51	0.0	5.0
Merged-chr18-35022015-3	chr18	35021528	35022528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67677.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	64.64	54.37	31.45	54.65	79.31	57.07	60.2	38.47	23.73
Merged-chr12-73687588-3	chr12	73687100	73688100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102804.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	139.58	155.75	122.09	176.1	191.73	116.55	171.1	245.84	86.81
Merged-chr16-32189301-3	chr16	32188810	32189810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	9510.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	116.7	84.32	107.29	90.41	71.84	98.87	116.18	83.57	81.19
Merged-chr5-140733481-3	chr5	140732983	140733983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	9356.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	198.5	156.21	109.14	140.34	83.51	94.85	98.23	124.69	52.46
Merged-chr15-97517968-3	chr15	97517459	97518459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187863.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	35.47	42.39	23.12	80.97	83.04	44.21	32.74	56.6	21.23
Merged-chr2-28498646-3	chr2	28498137	28499137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139197, intron 3 of 6)	intron (NM_139197, intron 3 of 6)	1746.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	73.22	74.19	87.87	58.03	50.85	56.27	88.72	73.4	59.33
Merged-chr4-48042888-3	chr4	48042411	48043411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2394.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	316.35	217.49	216.44	272.59	215.53	180.85	295.73	218.87	131.15
Merged-chr12-86897343-3	chr12	86896843	86897843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12529.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	113.84	124.87	75.85	153.16	114.29	97.26	158.43	183.94	127.4
Merged-chr15-58988992-3	chr15	58988484	58989484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55174.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	152.74	129.48	84.17	205.79	181.01	142.27	121.46	126.9	55.58
Merged-chr4-155563519-3	chr4	155563030	155564030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	-285.0	NM_001159637	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	236.26	165.42	184.07	202.42	148.82	103.69	177.44	169.35	109.92
Merged-chr11-116168245-3	chr11	116167754	116168754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172571)	promoter-TSS (NM_172571)	-76.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	35.47	23.5	16.65	35.09	24.72	24.92	30.63	39.35	18.11
Merged-chr4-133814205-3	chr4	133813691	133814691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	60540.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	405.01	338.22	303.38	291.48	202.46	250.78	311.57	261.76	186.11
Merged-chr1-72104229-2	chr1	72103743	72104743	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99048.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	1.14	0.46	3.7	18.22	11.2	14.47	13.73	6.63	3.75
Merged-chr5-100570214-3	chr5	100569706	100570706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1999.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	114.98	110.13	103.59	103.91	77.91	75.56	162.65	189.25	74.94
Merged-chr15-83174348-3	chr15	83173839	83174839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2131.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	155.03	103.22	50.87	149.11	111.5	66.71	102.45	107.45	62.45
Merged-chr14-74847817-3	chr14	74847312	74848312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	ORR1D1|LTR|ERVL-MaLR	100065.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	39.47	34.56	27.75	39.81	33.12	36.97	35.91	31.39	33.1
Merged-chr1-120057229-3	chr1	120056721	120057721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 12 of 13)	HAL1|LINE|L1	16559.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	45.19	30.87	25.9	41.83	19.13	18.49	79.21	58.37	29.35
Merged-chrX-7841730-3	chrX	7841225	7842225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138604)	promoter-TSS (NM_138604)	-106.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	137.29	103.22	105.44	97.83	78.84	77.16	115.12	110.98	68.07
Merged-chr7-120982368-3	chr7	120981867	120982867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	-55.0	NM_001354986	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	46.91	30.87	26.82	63.42	45.25	67.52	46.47	51.73	25.61
Merged-chr6-36989630-1	chr6	36989130	36990130	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 20 of 32)	L1MD2|LINE|L1	-179451.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	2.86	4.61	2.77	4.72	7.93	7.23	3.17	1.77	2.5
Merged-chr1-165661897-3	chr1	165661394	165662394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-27353.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	171.62	118.42	107.29	174.75	113.83	129.41	139.42	166.7	84.94
Merged-chr5-121191286-3	chr5	121190798	121191798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109992)	promoter-TSS (NM_001109992)	99.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	235.11	201.82	117.47	217.93	162.34	147.09	181.66	122.04	83.06
Merged-chr7-80836141-3	chr7	80835636	80836636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25972.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	272.3	199.98	140.59	297.55	182.87	153.52	251.37	299.79	133.02
Merged-chr17-24344847-1	chr17	24344347	24345347	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031621, intron 2 of 29)	intron (NM_001031621, intron 2 of 29)	2405.0	NM_001031621	381072.0	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	6.29	9.68	7.4	14.17	13.06	18.49	53.87	39.8	25.61
Merged-chr17-43072500-2	chr17	43072003	43073003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	55948.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	51.48	41.93	38.85	52.63	29.39	52.25	5.28	9.73	7.49
Merged-chr15-59744651-3	chr15	59744136	59745136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50323.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	137.86	113.35	95.27	128.87	76.97	105.3	98.23	116.73	59.95
Merged-chr6-115544669-3	chr6	115544166	115545166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199033)	promoter-TSS (NM_199033)	-38.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	33.75	46.08	24.97	59.38	51.32	55.46	48.58	57.04	43.72
Merged-chrX-73915100-3	chrX	73914595	73915595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3797.0	NM_001162424	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	65.79	58.98	60.12	53.98	36.39	60.28	50.7	93.3	29.98
Merged-chr6-31111658-3	chr6	31111103	31112103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-48510.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	143.01	127.18	97.12	201.74	124.56	150.31	209.12	185.71	116.79
Merged-chr4-132074707-3	chr4	132074191	132075191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128607, intron 1 of 17)	CpG	622.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	177.34	205.97	121.17	233.45	278.04	172.01	149.98	191.02	108.67
Merged-chr2-152669479-3	chr2	152669010	152670010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159553)	promoter-TSS (NM_001159553)	49.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	174.48	137.77	128.57	174.08	94.7	155.93	152.09	112.31	93.68
Merged-chr6-29517334-3	chr6	29516827	29517827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9298.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	11.44	11.06	14.8	15.52	6.53	8.04	13.73	10.17	9.99
Merged-chr4-147927876-3	chr4	147927379	147928379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 6 of 18)	intron (NM_011122, intron 6 of 18)	8897.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	32.61	29.49	49.02	41.83	35.45	53.85	72.88	66.77	32.48
Merged-chr19-46003480-3	chr19	46002985	46003985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176785)	promoter-TSS (NM_176785)	7.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	104.11	90.31	98.97	82.99	71.38	81.99	100.34	81.36	74.94
Merged-chr12-70912040-3	chr12	70911547	70912547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25810.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	46.91	45.16	29.6	38.46	27.99	32.96	27.46	36.7	34.35
Merged-chr11-114908238-2	chr11	114907749	114908749	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18208.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	261.43	190.76	141.52	299.57	123.16	163.17	211.24	212.24	83.06
Merged-chr7-141455189-4	chr7	141454738	141455738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163689)	promoter-TSS (NM_001163689)	50.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	233.97	217.03	211.81	244.25	186.6	217.83	223.91	259.11	153.01
Merged-chr11-116682697-3	chr11	116682175	116683175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	8078.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	200.22	163.12	123.02	220.63	163.28	221.85	186.94	187.04	105.55
Merged-chr11-98954710-3	chr11	98954216	98955216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5755.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	89.24	62.21	45.32	72.87	31.26	63.5	91.89	51.73	54.96
Merged-chr10-125764593-3	chr10	125764092	125765092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-201627.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	4.0	4.61	0.0	4.05	4.67	8.04	5.28	4.42	2.5
Merged-chr3-9885078-3	chr3	9884522	9885522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51343.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	54.35	42.39	38.85	82.32	60.65	81.18	85.55	97.28	44.97
Merged-chr15-40958337-3	chr15	40957835	40958835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-215366.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	9.72	4.61	7.4	16.87	11.66	9.65	13.73	4.86	6.25
Merged-chr7-141394309-3	chr7	141393791	141394791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	L1MC4a|LINE|L1	2131.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	64.64	71.88	53.65	89.06	71.84	82.79	71.82	65.88	73.69
Merged-chr11-60353092-3	chr11	60352598	60353598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	-193.0	NM_001359810	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	194.5	146.99	90.65	149.79	138.09	62.7	146.81	118.5	41.84
Merged-chr10-62504072-3	chr10	62503571	62504571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	3686.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	105.83	84.78	53.65	109.98	88.17	96.45	120.41	107.0	50.59
Merged-chr9-70012606-3	chr9	70012108	70013108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039519)	promoter-TSS (NM_001039519)	60.0	NR_104093	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	180.77	187.54	199.79	165.98	119.89	154.33	186.94	135.75	144.89
Merged-chr10-83648690-3	chr10	83648135	83649135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145220)	promoter-TSS (NM_145220)	29.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	93.24	88.93	103.59	122.12	130.62	123.78	98.23	94.18	59.33
Merged-chr16-35888360-3	chr16	35887850	35888850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16968.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	53.2	59.9	40.7	45.88	51.78	60.28	77.1	67.65	47.46
Merged-chrX-61680620-3	chrX	61680118	61681118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28998.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	41.76	35.02	12.02	66.12	39.65	35.37	84.49	94.18	24.98
Merged-chr1-151689734-3	chr1	151689227	151690227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 6 of 13)	intron (NM_022018, intron 6 of 13)	65000.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	112.69	94.0	63.82	84.34	62.05	51.44	97.17	66.33	52.46
Merged-chr10-16589604-3	chr10	16589096	16590096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	506186.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.72	5.99	7.4	6.07	2.8	4.82	1.06	6.63	4.37
Merged-chr18-36281033-3	chr18	36280545	36281545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008989)	promoter-TSS (NM_008989)	-117.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	656.15	530.82	334.83	562.71	507.56	381.8	499.58	366.56	288.53
Merged-chr9-14275132-3	chr9	14274638	14275638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	47.48	26.26	20.35	74.89	45.72	31.35	48.58	30.95	21.23
Merged-chr4-155669491-3	chr4	155668976	155669976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256107)	promoter-TSS (NM_001256107)	-222.0	NM_001256107	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	192.78	179.71	136.89	148.44	180.54	144.68	180.61	164.93	114.29
Merged-chr15-99820116-3	chr15	99819623	99820623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023063)	promoter-TSS (NM_023063)	26.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	119.56	117.5	87.87	82.99	74.17	58.68	96.11	110.54	68.07
Merged-chr5-21136733-3	chr5	21136249	21137249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39530.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	46.91	35.02	32.37	36.43	23.33	40.19	29.57	29.18	31.85
Merged-chr3-94583143-3	chr3	94582651	94583651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029721)	promoter-TSS (NM_029721)	-435.0	NM_029721	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	151.02	185.7	117.47	197.02	135.29	143.07	168.99	175.98	121.16
Merged-chr6-37870648-3	chr6	37870152	37871152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272064)	promoter-TSS (NM_001272064)	-159.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	70.93	66.35	76.77	90.41	52.25	51.44	85.55	49.08	55.58
Merged-chr14-47189422-3	chr14	47188942	47189942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008102)	promoter-TSS (NM_008102)	-29.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	173.33	152.98	163.72	229.4	214.13	172.81	178.5	188.81	134.9
Merged-chr10-6717342-3	chr10	6716850	6717850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAG)n|Simple_repeat|Simple_repeat	-41243.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	85.81	87.09	59.2	80.29	70.44	61.89	69.71	80.47	35.6
Merged-chr5-90772444-3	chr5	90771956	90772956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	21.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	102.4	99.99	52.72	127.52	88.64	80.38	72.88	80.92	56.83
Merged-chr7-16295622-3	chr7	16295140	16296140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8845.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	184.2	165.88	126.72	210.51	153.48	122.18	196.45	220.64	114.29
Merged-chr11-59227008-3	chr11	59226511	59227511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1151.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	272.87	277.85	170.19	230.08	285.04	230.69	275.66	374.52	168.62
Merged-chr11-43411606-3	chr11	43411123	43412123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14358.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	27.46	20.27	1.85	18.89	11.66	9.65	21.12	12.38	5.0
Merged-chr6-86397116-3	chr6	86396614	86397614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	36.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	217.95	192.15	194.24	236.15	197.8	262.04	248.2	267.95	124.28
Merged-chr15-78877319-4	chr15	78876823	78877823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145929, exon 1 of 17)	5' UTR (NM_145929, exon 1 of 17)	133.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	525.15	426.23	363.51	477.03	362.01	349.65	456.27	508.05	250.44
Merged-chr8-11098601-3	chr8	11098118	11099118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90188.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	119.56	80.64	24.05	186.22	128.76	82.79	38.02	34.93	6.25
Merged-chr10-14055579-3	chr10	14055088	14056088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	89209.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	180.77	233.62	143.37	184.87	180.07	154.33	165.82	171.56	96.8
Merged-chr6-34384245-3	chr6	34383747	34384747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172398)	promoter-TSS (NM_172398)	0.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	52.63	77.87	89.72	60.05	83.51	95.65	80.27	75.61	49.96
Merged-chr13-52036541-3	chr13	52036050	52037050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60191.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	131.57	109.67	101.74	108.63	79.77	103.69	128.85	122.92	80.56
Merged-chr2-28840486-3	chr2	28840007	28841007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166033)	promoter-TSS (NM_001166033)	101.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	80.09	75.57	76.77	85.69	70.91	86.81	86.61	69.86	36.85
Merged-chr15-81831617-3	chr15	81831115	81832115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20201.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	22.88	11.98	7.4	16.87	3.27	16.88	11.62	6.19	7.49
Merged-chrUn_JH584304-2040-1	chrUn_JH584304	1540	2540	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57649.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	53.87	38.91	0.0
Merged-chrX-74270276-3	chrX	74269785	74270785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-531.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	249.99	211.04	114.69	231.43	237.92	155.93	229.19	282.99	132.4
Merged-chr2-152742625-3	chr2	152742127	152743127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6376.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	34.9	28.11	12.02	31.71	18.19	36.97	26.4	34.93	13.12
Merged-chr1-37562153-3	chr1	37561643	37562643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21127.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	84.66	75.11	47.17	41.16	31.26	47.42	45.42	31.39	41.84
Merged-chr19-5424971-3	chr19	5424460	5425460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256515)	promoter-TSS (NM_001256515)	19.0	NM_024176	66556.0	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	160.75	64.97	102.67	132.24	62.51	97.26	161.6	108.77	61.2
Merged-chr15-67174169-3	chr15	67173671	67174671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	2711.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	244.27	251.13	162.79	188.92	145.08	145.49	133.08	178.19	99.3
Merged-chr4-55816021-3	chr4	55815523	55816523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-283548.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	33.18	28.57	33.3	10.8	5.13	6.43	21.12	10.17	9.99
Merged-chr13-23706187-3	chr13	23705678	23706678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347493, intron 2 of 4)	intron (NM_001347493, intron 2 of 4)	4676.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	53.2	47.92	49.95	50.6	28.92	40.99	52.81	41.12	35.6
Merged-chr16-37539795-3	chr16	37539293	37540293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028812)	promoter-TSS (NM_028812)	-4.0	NM_001355727	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	256.28	285.69	151.69	251.67	203.86	161.56	277.78	325.88	101.8
Merged-chr6-82824529-3	chr6	82824049	82825049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50095.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	78.94	58.98	76.77	65.45	42.45	53.85	64.43	71.19	37.47
Merged-chr17-26503132-3	chr17	26502634	26503634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5338.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	384.42	276.01	198.87	349.5	271.04	197.73	277.78	273.7	144.27
Merged-chr15-83100189-3	chr15	83099682	83100682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023475)	promoter-TSS (NM_023475)	-23.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	102.4	70.5	53.65	56.68	53.18	50.64	99.28	69.86	41.22
Merged-chr8-110997821-3	chr8	110997325	110998325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-2.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	139.01	176.02	97.12	97.83	128.76	78.77	138.36	171.56	73.69
Merged-chr2-91335386-3	chr2	91334883	91335883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	70268.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	14.3	12.9	11.1	9.45	13.06	16.88	8.45	10.61	19.36
Merged-chr15-90224225-3	chr15	90223721	90224721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033441)	promoter-TSS (NM_001033441)	-90.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	46.91	48.38	31.45	65.45	36.39	45.01	51.75	50.41	43.09
Merged-chr2-32363042-3	chr2	32362534	32363534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028412)	promoter-TSS (NM_028412)	24.0	NM_001252536	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	139.58	122.11	115.62	146.41	134.35	115.75	153.15	158.74	76.82
Merged-chr2-128796663-3	chr2	128796152	128797152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 18 of 18)	intron (NM_008587, intron 18 of 18)	-21651.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	48.62	48.38	24.05	76.24	49.92	30.54	45.42	53.94	33.72
Merged-chr8-25720094-3	chr8	25719613	25720613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_121643)	promoter-TSS (NR_121643)	65.0	NR_121643	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	46.91	60.36	35.15	78.94	44.32	44.21	52.81	36.7	23.11
Merged-chr8-71521824-3	chr8	71521332	71522332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10063.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	9.72	3.69	3.7	2.7	2.8	6.43	3.17	5.31	2.5
Merged-chr16-30009079-3	chr16	30008581	30009581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	CpG	414.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	74.37	40.55	105.44	82.32	38.25	94.04	117.24	68.98	43.09
Merged-chr11-110372772-3	chr11	110372288	110373288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26314.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	28.03	32.25	5.55	77.59	82.11	45.01	121.46	98.6	38.72
Merged-chr12-69447431-3	chr12	69446943	69447943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28107.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	311.77	213.34	168.34	323.86	204.33	249.17	316.86	309.52	148.01
Merged-chr14-33193987-3	chr14	33193479	33194479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8913.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	215.09	260.34	124.87	223.33	210.86	142.27	143.64	203.84	138.65
Merged-chr3-96160389-3	chr3	96159886	96160886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025614, exon 12 of 12)	3' UTR (NM_001025614, exon 12 of 12)	-1584.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	46.91	39.63	24.05	61.4	56.91	35.37	26.4	42.45	26.23
Merged-chr18-38212853-3	chr18	38212363	38213363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3101.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	13.16	6.45	0.0	3.37	3.27	3.22	4.22	2.65	0.0
Merged-chr16-33934901-3	chr16	33934408	33935408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	32130.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	47.48	55.29	59.2	51.95	55.51	44.21	68.65	63.23	45.59
Merged-chr2-174077920-3	chr2	174077412	174078412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102423, intron 1 of 7)	intron (NM_001102423, intron 1 of 7)	861.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	55.49	38.25	30.52	54.65	35.92	53.85	83.44	45.54	37.47
Merged-chr10-77613678-3	chr10	77613175	77614175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125903)	promoter-TSS (NR_125903)	-34.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	43.48	67.74	71.22	64.1	58.78	99.67	52.81	75.17	61.2
Merged-chr1-13659105-3	chr1	13658594	13659594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	1415.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	62.93	69.58	49.02	56.0	52.72	46.62	45.42	53.94	33.72
Merged-chr11-88998526-3	chr11	88998033	88999033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	-870.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	90.38	88.01	68.45	91.76	62.98	70.73	98.23	112.31	59.95
Merged-chr5-5320353-3	chr5	5319856	5320856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54288.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	155.03	183.39	73.07	67.47	82.57	43.4	141.53	173.77	128.03
Merged-chr3-88142337-3	chr3	88141822	88142822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133665)	promoter-TSS (NM_133665)	-50.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	408.45	234.54	235.86	408.2	234.65	238.73	308.41	230.81	148.01
Merged-chr17-14953654-3	chr17	14953152	14954152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024250, intron 7 of 11)	intron (NM_024250, intron 7 of 11)	7608.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	37.18	40.55	44.4	31.04	27.06	56.27	21.12	29.18	36.22
Merged-chr2-145740886-3	chr2	145740391	145741391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	L3|LINE|CR1	39696.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	141.87	130.86	76.77	165.31	141.82	140.66	146.81	130.88	81.81
Merged-chr11-103964231-3	chr11	103963729	103964729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2496.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	87.52	61.28	51.8	106.61	41.52	58.68	54.92	42.01	86.81
Merged-chr2-46371206-3	chr2	46370711	46371711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	674606.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	46.91	56.68	31.45	72.19	55.05	70.73	85.55	85.34	44.34
Merged-chr3-126770228-3	chr3	126769725	126770725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025439, intron 5 of 19)	intron (NM_001025439, intron 5 of 19)	173161.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	30.32	20.27	19.42	14.84	14.93	16.08	32.74	32.28	25.61
Merged-chr4-132922728-3	chr4	132922227	132923227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163792)	promoter-TSS (NM_001163792)	-176.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	176.19	102.29	103.59	122.8	86.77	77.16	125.69	103.47	58.08
Merged-chr9-94696855-3	chr9	94696343	94697343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	26951.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	109.83	102.29	95.27	118.75	95.17	94.04	95.06	107.89	69.95
Merged-chr7-25712006-3	chr7	25711503	25712503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028771, exon 5 of 5)	3' UTR (NM_028771, exon 5 of 5)	7050.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	39.47	45.62	57.35	36.43	48.98	76.36	45.42	24.76	34.35
Merged-chr17-74431710-3	chr17	74431191	74432191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	MTE2b|LTR|ERVL-MaLR	27417.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	213.38	176.94	154.47	205.79	181.01	168.8	179.55	212.68	118.04
Merged-chr14-14120942-3	chr14	14120409	14121409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025550)	promoter-TSS (NM_025550)	-5.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	132.14	134.09	100.82	119.43	132.49	94.04	106.67	86.66	78.07
Merged-chr10-96374776-3	chr10	96374270	96375270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	148563.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	303.76	297.21	152.62	242.22	219.73	184.87	212.29	290.5	123.66
Merged-chr10-19008031-3	chr10	19007525	19008525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166402, intron 2 of 7)	intron (NM_001166402, intron 2 of 7)	3938.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	65.79	52.07	35.15	65.45	40.59	22.51	50.7	39.8	40.59
Merged-chr12-70140752-3	chr12	70140245	70141245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-13426.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	33.75	33.18	40.7	25.64	28.92	26.53	31.69	37.14	36.22
Merged-chr6-129472841-3	chr6	129472347	129473347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132130)	promoter-TSS (NR_132130)	-68.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	84.66	76.95	70.3	65.45	74.64	66.71	65.48	81.36	44.34
Merged-chr15-50855174-3	chr15	50854671	50855671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	33878.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	48.05	47.46	39.77	47.9	27.99	28.94	47.53	34.05	22.48
Merged-chr5-64342351-3	chr5	64341863	64342863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	112006.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	149.88	182.47	100.82	168.0	165.14	154.33	136.25	183.06	142.39
Merged-chr2-9965793-3	chr2	9965304	9966304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	ORR1A2|LTR|ERVL-MaLR	59655.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	13.16	5.53	9.25	11.47	7.0	0.0	7.39	5.31	2.5
Merged-chr11-85140168-3	chr11	85139668	85140668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029934)	promoter-TSS (NM_001029934)	-213.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	277.45	164.5	146.14	230.75	141.35	155.93	224.97	206.05	127.4
Merged-chr2-153291397-3	chr2	153290886	153291886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008444)	promoter-TSS (NM_008444)	-30.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	114.98	100.45	74.92	93.11	99.37	45.82	77.1	74.73	44.97
Merged-chr3-133310159-3	chr3	133309689	133310689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146141)	promoter-TSS (NM_146141)	79.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	95.53	64.97	68.45	112.0	55.98	68.32	122.52	51.73	51.84
Merged-chr14-56778483-3	chr14	56778007	56779007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360420)	promoter-TSS (NM_001360420)	-189.0	NM_025682	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	163.04	155.28	116.54	124.15	111.03	138.25	130.97	133.53	112.42
Merged-chr10-39413553-3	chr10	39413055	39414055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	L1MB2|LINE|L1	43756.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	163.04	150.68	86.95	149.79	134.82	108.51	130.97	120.71	79.94
Merged-chrX-73716401-3	chrX	73715905	73716905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012060)	promoter-TSS (NM_012060)	-192.0	NM_007435	11666.0	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	82.95	71.88	77.7	74.22	57.38	51.44	64.43	77.82	53.71
Merged-chr11-70475355-3	chr11	70474854	70475854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-15370.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	53.77	35.02	37.0	63.42	44.78	40.99	74.99	44.66	34.97
Merged-chr16-50753813-3	chr16	50753298	50754298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21025.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	105.83	99.99	24.05	107.95	142.29	113.33	61.26	80.47	34.35
Merged-chr1-173973360-1	chr1	173972860	173973860	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 3 of 6)	intron (NM_008327, intron 3 of 6)	9484.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	25.17	19.35	28.67	122.8	83.04	67.52	5.28	4.42	3.75
Merged-chr7-43636353-3	chr7	43635849	43636849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	1610.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	32.04	35.94	18.5	43.18	15.39	23.31	40.14	34.05	34.97
Merged-chr12-69168753-4	chr12	69168285	69169285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081406)	promoter-TSS (NM_001081406)	-29.0	NR_155206	69706.0	Mm.28847	NM_001081406	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	56.06	73.26	60.12	51.28	55.98	62.7	101.39	69.42	52.46
Merged-chr6-71452977-3	chr6	71452500	71453500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-12363.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	32.61	50.23	35.15	57.35	30.79	55.46	41.19	36.7	26.85
Merged-chr9-66945989-3	chr9	66945479	66946479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311101)	promoter-TSS (NM_001311101)	-107.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	164.75	183.39	158.17	161.26	159.08	167.99	147.87	142.38	124.91
Merged-chr15-83367408-3	chr15	83366912	83367912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027980)	promoter-TSS (NR_027980)	-115.0	NR_027980	69291.0	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	8.58	4.15	12.02	7.42	6.53	6.43	13.73	4.42	2.5
Merged-chr13-111808097-4	chr13	111807625	111808625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	CpG	868.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	457.07	365.86	350.56	379.87	295.3	286.95	362.27	303.33	184.24
Merged-chr3-108389401-3	chr3	108388903	108389903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5565.0	NM_019976	56742.0	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	8.58	4.61	5.55	6.75	3.73	1.61	6.34	2.21	1.25
Merged-chr4-117127173-3	chr4	117126660	117127660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175030, intron 2 of 3)	intron (NM_175030, intron 2 of 3)	347.0	NM_175030	242646.0	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	174.48	166.34	148.92	224.01	185.2	179.24	157.37	174.66	108.67
Merged-chr14-51278653-3	chr14	51278151	51279151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22539.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	36.04	35.94	18.5	26.31	16.33	22.51	10.56	5.75	11.24
Merged-chr13-49272445-3	chr13	49271950	49272950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23744.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	33.75	33.18	45.32	58.03	40.12	50.64	53.87	43.33	29.35
Merged-chr2-112493288-3	chr2	112492776	112493776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028844, intron 1 of 5)	CpG	312.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	139.58	84.32	99.89	158.56	79.31	59.48	146.81	68.09	68.7
Merged-chr3-88746025-3	chr3	88745512	88746512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018804, exon 4 of 4)	3' UTR (NM_018804, exon 4 of 4)	26587.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	175.05	149.75	152.62	114.7	88.64	66.71	116.18	142.38	35.6
Merged-chr7-45715343-3	chr7	45714836	45715836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020011)	promoter-TSS (NM_020011)	-129.0	NM_020011	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	169.9	133.63	81.4	124.15	99.37	100.47	123.57	144.15	69.32
Merged-chr18-82862340-3	chr18	82861852	82862852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	6455.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	31.46	19.81	13.87	24.96	15.39	16.88	22.18	13.71	11.87
Merged-chr1-173409211-3	chr1	173408712	173409712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11392.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	18.88	12.9	3.7	17.54	12.6	12.86	5.28	7.96	3.75
Merged-chrX-155216430-3	chrX	155215955	155216955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291865)	promoter-TSS (NM_001291865)	-6.0	NM_001291865	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	105.26	105.98	90.65	113.35	76.97	82.79	119.35	110.98	44.97
Merged-chr13-98803882-3	chr13	98803360	98804360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 2 of 25)	intron (NM_172591, intron 2 of 25)	11589.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	38.9	56.22	29.6	47.9	34.99	38.58	54.92	76.49	36.85
Merged-chr5-135551798-3	chr5	135551309	135552309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	17.16	15.67	14.8	29.01	10.73	22.51	24.29	14.59	13.12
Merged-chr11-48901040-3	chr11	48900549	48901549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024230, intron 2 of 4)	intron (NM_001024230, intron 2 of 4)	1103.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	89.24	84.32	80.47	89.06	53.18	76.36	90.83	105.24	60.58
Merged-chr7-80993905-3	chr7	80993397	80994397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	CpG	213.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	116.13	74.65	141.52	130.9	59.71	57.07	151.03	55.71	56.21
Merged-chr17-39843485-7	chr17	39842948	39843948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	451.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	356.39	253.43	362.58	209.84	110.1	200.95	172.16	101.26	263.55
Merged-chr4-83486240-7	chr4	83485775	83486775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290527, exon 1 of 11)	5' UTR (NM_001290527, exon 1 of 11)	188.0	NM_001290527	101739.0	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	135.0	111.97	98.05	135.62	100.77	83.59	134.14	58.81	90.56
Merged-chr19-16330415-3	chr19	16329898	16330898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-15394.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	64.07	97.69	74.92	47.23	30.32	57.07	63.37	72.52	56.21
Merged-chr12-77058846-1	chr12	77058346	77059346	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96598.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	23.45	29.03	18.5	45.88	43.39	52.25	28.52	27.41	22.48
Merged-chr8-105860507-3	chr8	105860024	105861024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357229)	promoter-TSS (NM_001357229)	-9.0	NM_026532	68051.0	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	136.15	117.5	101.74	126.85	97.97	81.99	163.71	118.94	93.05
Merged-chr7-122310385-3	chr7	122309889	122310889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	21264.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	97.25	100.45	47.17	74.89	73.24	57.87	102.45	101.26	43.72
Merged-chr3-107279048-3	chr3	107278560	107279560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026774, exon 1 of 4)	exon (NM_026774, exon 1 of 4)	202.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	50.91	64.97	34.22	50.6	70.44	60.28	69.71	85.34	36.85
Merged-chr13-17805373-3	chr13	17804879	17805879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081058)	promoter-TSS (NM_001081058)	-282.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	376.41	285.23	246.04	280.01	193.6	195.32	361.22	234.79	186.11
Merged-chr12-99796124-3	chr12	99795630	99796630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	87312.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	26.31	23.04	3.7	22.94	14.93	4.82	14.79	16.8	7.49
Merged-chr11-61505082-3	chr11	61504591	61505591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013717)	promoter-TSS (NM_013717)	-53.0	NM_013717	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	114.98	106.44	64.75	120.1	98.9	59.48	97.17	122.04	34.97
Merged-chr5-143527652-3	chr5	143527188	143528188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	CpG	305.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	429.61	315.18	332.06	302.27	213.66	280.52	311.57	193.23	181.11
Merged-chr6-125148665-5	chr6	125148124	125149124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	3400.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	178.48	125.33	107.29	176.1	110.1	94.85	92.94	112.75	64.33
Merged-chr8-70619034-3	chr8	70618523	70619523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153074, intron 2 of 2)	intron (NM_153074, intron 2 of 2)	2179.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	186.49	143.76	128.57	148.44	92.84	95.65	148.92	160.51	96.18
Merged-chr6-134065281-3	chr6	134064785	134065785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	29585.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	144.16	174.18	132.27	142.37	110.1	108.51	121.46	126.46	113.04
Merged-chr5-7980821-3	chr5	7980320	7981320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054098, exon 5 of 5)	3' UTR (NM_054098, exon 5 of 5)	20348.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	4.58	10.14	7.4	11.47	9.33	18.49	15.84	5.75	10.62
Merged-chr18-65694960-1	chr18	65694460	65695460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3308.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	183.06	164.5	132.27	240.87	180.54	147.09	163.71	184.38	85.56
Merged-chr19-23141081-3	chr19	23140570	23141570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-156.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	224.82	267.25	160.02	293.5	245.38	221.04	276.72	276.8	133.02
Merged-chr11-68871947-3	chr11	68871445	68872445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16608.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	30.32	33.18	38.85	51.95	50.38	65.11	36.97	24.32	17.49
Merged-chr1-85775253-1	chr1	85774753	85775753	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_108086)	promoter-TSS (NR_108086)	-18.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0.57	1.84	0.0	6.75	8.86	6.43	1.06	2.21	4.37
Merged-chr11-98754205-3	chr11	98753708	98754708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	12423.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	105.83	78.33	79.55	120.1	100.3	110.12	141.53	149.01	120.53
Merged-chr4-59815551-3	chr4	59814938	59815938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	9788.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	78.94	68.66	80.47	62.75	48.52	77.97	53.87	49.96	56.21
Merged-chr2-52950376-3	chr2	52949863	52950863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	92495.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	78.94	70.5	29.6	100.53	75.11	52.25	61.26	77.82	39.35
Merged-chr9-21723530-3	chr9	21722998	21723998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010700)	promoter-TSS (NM_010700)	-78.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	163.61	148.37	98.05	193.64	148.35	141.47	184.83	217.1	94.3
Merged-chr11-4258926-3	chr11	4258429	4259429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	1361.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	9.72	2.3	3.7	4.72	4.2	10.45	4.22	1.77	1.25
Merged-chr3-144872196-1	chr3	144871696	144872696	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22894.0	NM_139148	229927.0	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	5.72	3.69	7.4	6.07	3.73	3.22	1.06	1.77	0.0
Merged-chr2-48717998-3	chr2	48717501	48718501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96108.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	9.15	9.68	0.0	8.1	5.6	11.25	5.28	7.07	12.49
Merged-chrUn_JH584304-14603-1	chrUn_JH584304	14103	15103	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	45086.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	64.43	39.8	0.0
Merged-chr2-31785245-3	chr2	31784750	31785750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283046, intron 5 of 11)	intron (NM_001283046, intron 5 of 11)	25077.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	17.73	16.13	1.85	22.27	13.06	6.43	14.79	13.27	8.12
Merged-chr2-163645129-3	chr2	163644642	163645642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	1.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	330.07	292.6	235.86	369.75	263.11	240.33	272.5	326.32	151.14
Merged-chr4-94979094-3	chr4	94978571	94979571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	29.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	234.54	181.55	159.09	231.43	151.62	165.58	190.11	204.28	115.54
Merged-chr2-90504947-3	chr2	90504448	90505448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-25774.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	160.75	102.75	92.5	177.45	89.57	100.47	99.28	112.75	79.32
Merged-chr16-31235642-3	chr16	31235171	31236171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34433.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	171.04	93.08	88.8	119.43	69.51	60.28	158.43	144.15	71.82
Merged-chr4-102517223-3	chr4	102516801	102517801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52759.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	127.57	105.06	74.92	0.0	1.87	0.0	103.51	83.57	99.92
Merged-chrUn_JH584304-60409-1	chrUn_JH584304	59909	60909	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003518)	promoter-TSS (NR_003518)	-720.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	386.56	304.21	0.0
Merged-chrX-123103494-1	chrX	123102994	123103994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310652)	promoter-TSS (NM_001310652)	-29.0	NM_001310652	73061.0	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	3110007F17Rik	claudin 34C1	protein-coding	0.57	0.0	1.85	3.37	2.8	1.61	51.75	38.47	17.49
Merged-chr17-74432832-3	chr17	74432369	74433369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	intron (NM_001033367, intron 8 of 8)	26239.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	109.83	129.48	101.74	151.14	113.36	118.16	106.67	100.37	63.08
Merged-chr10-117953119-3	chr10	117952624	117953624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27665.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	60.64	74.19	45.32	110.65	67.64	72.34	132.02	127.79	63.08
Merged-chr18-77865615-3	chr18	77865113	77866113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-69223.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	18.88	12.9	12.02	16.19	14.0	19.29	23.24	19.9	13.74
Merged-chr5-100498606-3	chr5	100498096	100499096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115010)	promoter-TSS (NM_001115010)	-23.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	125.28	149.29	118.39	126.85	126.89	97.26	147.87	132.65	76.19
Merged-chr16-43655399-3	chr16	43654899	43655899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	8785.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	8.01	5.07	3.7	7.42	9.33	0.0	4.22	4.42	2.5
Merged-chr18-62720135-3	chr18	62719629	62720629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168423, intron 1 of 4)	intron (NM_001168423, intron 1 of 4)	21258.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	8.01	5.99	5.55	6.75	9.33	12.06	16.9	9.73	19.36
Merged-chr1-191125966-3	chr1	191125475	191126475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	27561.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	51.48	49.76	28.67	59.38	33.59	37.78	67.6	55.71	19.36
Merged-chr3-129901435-3	chr3	129900943	129901943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009811)	promoter-TSS (NM_009811)	28.0	NM_009811	12368.0	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	34.9	26.26	33.3	46.56	46.18	56.27	31.69	30.95	27.48
Merged-chr11-11763527-3	chr11	11763040	11764040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	45422.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	144.73	119.8	86.95	78.27	76.51	73.95	80.27	85.78	64.33
Merged-chr15-61987202-3	chr15	61986712	61987712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	1871.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	118.99	101.83	123.02	134.94	97.5	122.18	132.02	102.14	76.19
Merged-chr12-44176510-1	chr12	44176010	44177010	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33558.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.14	2.76	3.7	2.02	7.93	1.61	15.84	19.9	11.87
Merged-chr1-138550426-3	chr1	138549940	138550940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 2 of 9)	RLTR26_Mus|LTR|ERVK	69317.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	32.61	30.41	28.67	37.11	30.32	41.8	28.52	33.16	21.86
Merged-chr4-59928591-3	chr4	59928089	59929089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13533.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	4.0	1.38	0.0	8.1	0.47	1.61	0.0	3.98	4.37
Merged-chr15-91172357-3	chr15	91171843	91172843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	19664.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	30.89	32.72	24.97	52.63	37.79	28.94	36.97	37.14	29.35
Merged-chr5-114923115-3	chr5	114922610	114923610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145209)	promoter-TSS (NM_145209)	-130.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	251.13	313.79	176.67	326.56	358.74	184.07	321.08	496.55	142.39
Merged-chr17-88127378-3	chr17	88126878	88127878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190356, intron 1 of 1)	L1M4|LINE|L1	1866.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	38.33	28.57	54.57	57.35	36.39	84.4	46.47	39.8	29.35
Merged-chr6-39055258-3	chr6	39054756	39055756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	12330.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	40.62	29.03	35.15	23.62	14.46	14.47	39.08	17.24	8.12
Merged-chr2-167358655-3	chr2	167358172	167359172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-9494.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	17.16	15.21	12.95	31.71	20.99	26.53	48.58	26.97	8.12
Merged-chr19-12795622-3	chr19	12795134	12796134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361971)	promoter-TSS (NM_001361971)	489.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	470.8	368.17	389.41	414.95	288.3	343.22	367.55	306.86	232.95
Merged-chr11-78697523-3	chr11	78697033	78698033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-108.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	87.52	78.33	46.25	103.23	95.17	71.54	117.24	104.35	53.08
Merged-chr16-10412107-3	chr16	10411610	10412610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	172.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	49.2	30.41	46.25	20.24	41.99	45.01	43.3	28.74	38.72
Merged-chr4-116075280-5	chr4	116074760	116075760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025641)	promoter-TSS (NM_025641)	-9.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	382.7	345.13	278.41	305.65	254.71	229.88	333.75	302.88	204.85
Merged-chr14-30593347-3	chr14	30592826	30593826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	16984.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	272.87	280.62	207.19	309.7	299.03	229.08	282.0	342.24	186.73
Merged-chr6-134792692-3	chr6	134792163	134793163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048054)	promoter-TSS (NM_001048054)	-35.0	NM_001048054	70686.0	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	264.86	302.74	175.74	290.13	295.77	274.9	259.82	244.08	159.25
Merged-chr5-103629637-3	chr5	103629148	103630148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029415)	promoter-TSS (NM_029415)	-245.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	23.45	24.42	12.95	18.89	18.19	16.08	9.51	12.38	7.49
Merged-chr2-180725260-3	chr2	180724769	180725769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183161)	promoter-TSS (NM_183161)	-70.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	46.34	28.57	31.45	40.48	40.59	58.68	46.47	40.24	36.85
Merged-chr19-24995036-3	chr19	24994530	24995530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4499.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	69.79	69.58	16.65	19.57	20.99	9.65	24.29	38.47	48.09
Merged-chr2-24311908-3	chr2	24311427	24312427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7A_LINE|LINE|CR1	20731.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	41.76	47.92	52.72	42.51	38.72	46.62	42.25	45.99	56.21
Merged-chr2-66144065-3	chr2	66143578	66144578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19285.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	63.5	82.94	67.52	87.04	55.51	67.52	84.49	57.92	38.72
Merged-chr1-128103720-2	chr1	128103230	128104230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357573)	promoter-TSS (NM_001357573)	424.0	NM_181750	226412.0	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	135.58	149.29	110.07	133.59	117.09	110.92	152.09	143.7	126.15
Merged-chr13-67526187-3	chr13	67525672	67526672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	59.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	97.82	110.13	130.42	103.23	95.17	126.19	142.59	127.79	91.81
Merged-chr14-103945905-3	chr14	103945412	103946412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	81230.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	17.73	5.53	8.32	14.84	15.86	19.29	20.07	11.05	11.24
Merged-chr2-129065969-3	chr2	129065452	129066452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027192)	promoter-TSS (NM_027192)	5.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	36.04	24.42	30.52	48.58	34.52	52.25	32.74	29.63	18.74
Merged-chrX-20932185-3	chrX	20931682	20932682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008823)	promoter-TSS (NM_008823)	-627.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	78.37	77.41	49.95	60.05	58.31	58.68	73.93	88.43	57.46
Merged-chr14-19418193-3	chr14	19417704	19418704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	184383.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	188.78	909.13	98.05	247.62	1066.9	122.98	551.33	495.23	133.02
Merged-chr2-60019298-3	chr2	60018811	60019811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	106429.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	106.4	95.38	75.85	85.69	79.31	79.58	54.92	66.77	44.34
Merged-chr9-104281147-3	chr9	104280645	104281645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18215.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	50.34	57.14	28.67	55.33	41.99	24.11	31.69	47.31	16.86
Merged-chr3-63964742-3	chr3	63964230	63965230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331067)	promoter-TSS (NM_001331067)	3.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	135.58	132.71	107.29	135.62	131.09	152.72	132.02	120.71	86.18
Merged-chr8-111562018-3	chr8	111561497	111562497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	23654.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	49.2	68.66	35.15	113.35	88.64	37.78	46.47	35.37	28.1
Merged-chr15-81466199-3	chr15	81465726	81466726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019712)	promoter-TSS (NM_019712)	-90.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	94.96	75.11	121.17	97.83	70.44	91.63	101.39	84.45	67.45
Merged-chr6-98113897-3	chr6	98113406	98114406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122123.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	17.16	17.05	15.72	13.49	11.66	21.7	19.01	13.71	9.99
Merged-chr2-157078182-1	chr2	157077682	157078682	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1083.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	191.64	99.99	97.12	120.77	85.84	124.59	138.36	101.26	72.45
Merged-chr18-35118964-3	chr18	35118483	35119483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009818)	promoter-TSS (NM_009818)	71.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	216.81	194.45	172.04	215.91	168.41	162.37	217.57	174.21	116.79
Merged-chr8-71613641-3	chr8	71613154	71614154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 3 of 11)	intron (NM_146211, intron 3 of 11)	2630.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	165.32	158.05	107.29	170.7	121.29	109.32	174.27	229.48	88.06
Merged-chr3-103212372-3	chr3	103211904	103212904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	40749.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	10.3	10.6	15.72	9.45	9.8	19.29	21.12	54.83	13.74
Merged-chr10-7792859-3	chr10	7792358	7793358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026141)	promoter-TSS (NM_026141)	-36.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	417.6	364.94	294.14	294.18	299.5	190.5	341.15	325.44	162.38
Merged-chr12-54795723-3	chr12	54795224	54796224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026998)	promoter-TSS (NM_026998)	-62.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	138.44	139.62	115.62	145.74	138.55	142.27	173.21	155.64	114.91
Merged-chr17-84117004-3	chr17	84116499	84117499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38339.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	114.98	85.25	48.1	138.99	81.64	74.75	63.37	35.37	48.71
Merged-chr11-87737441-3	chr11	87736942	87737942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-109.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	60.64	55.75	57.35	72.19	62.51	59.48	76.05	68.09	46.22
Merged-chr1-171017935-3	chr1	171017376	171018376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	149.31	151.14	109.14	144.39	129.69	174.42	152.09	179.08	105.55
Merged-chr8-4677912-3	chr8	4677421	4678421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64751.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	590.36	560.77	360.73	491.19	438.98	385.01	477.4	594.71	256.06
Merged-chr13-97198377-3	chr13	97197886	97198886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010422)	promoter-TSS (NM_010422)	-29.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	54.35	46.08	49.02	53.3	50.85	60.28	62.31	57.04	44.34
Merged-chr5-105011792-3	chr5	105011277	105012277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29060.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	85.81	68.66	49.02	61.4	55.51	64.3	60.2	45.1	39.97
Merged-chr15-81021593-3	chr15	81021105	81022105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	43840.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	38.9	29.49	49.95	48.58	14.93	38.58	27.46	30.07	26.85
Merged-chr12-76549509-1	chr12	76549009	76550009	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	L2c|LINE|L2	-1584.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	15.45	6.91	20.35	14.17	11.2	16.08	17.96	9.29	5.62
Merged-chr8-35587812-3	chr8	35587308	35588308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081279)	promoter-TSS (NM_001081279)	10.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	25.74	13.36	17.57	20.92	21.93	28.94	41.19	20.34	14.99
Merged-chr12-55415919-1	chr12	55415419	55416419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310583, intron 6 of 6)	PB1D10|SINE|Alu	17094.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	74.94	81.56	86.02	87.04	79.77	102.08	100.34	101.26	77.44
Merged-chr8-46470865-3	chr8	46470379	46471379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007981)	promoter-TSS (NM_007981)	-158.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	125.28	95.84	88.8	122.8	98.43	102.88	97.17	84.9	64.95
Merged-chr19-3882456-3	chr19	3881946	3882946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 3 of 11)	intron (NM_001271496, intron 3 of 11)	22784.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	77.8	97.69	86.02	72.19	66.24	67.52	83.44	102.14	73.07
Merged-chr16-14317380-3	chr16	14316881	14317881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025345)	promoter-TSS (NM_025345)	-49.0	NM_025345	66086.0	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	112.69	111.97	122.09	96.48	99.37	98.06	140.47	131.77	79.94
Merged-chr5-141056218-3	chr5	141055743	141056743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-55647.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	76.66	121.19	86.95	88.39	88.64	56.27	113.01	145.47	43.72
Merged-chr11-51967608-3	chr11	51967109	51968109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029976)	promoter-TSS (NM_029976)	-22.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	62.35	35.02	44.4	43.86	51.32	37.78	47.53	50.41	33.72
Merged-chr5-67846527-3	chr5	67846016	67847016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	915.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	91.53	110.59	73.07	89.06	77.44	85.2	125.69	129.55	61.2
Merged-chr13-111930090-3	chr13	111929596	111930596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62160.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	87.52	70.5	44.4	53.98	52.72	25.72	28.52	28.3	14.99
Merged-chr16-23279979-3	chr16	23279477	23280477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-10493.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	120.7	144.23	105.44	124.15	110.1	122.98	130.97	151.22	104.92
Merged-chr2-167007058-3	chr2	167006573	167007573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8240.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	198.5	111.05	76.77	194.99	133.89	58.68	106.67	127.34	55.58
Merged-chr1-60566836-3	chr1	60566330	60567330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045513)	promoter-TSS (NM_001045513)	-65.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	77.8	46.08	56.42	90.41	48.52	64.3	70.76	48.64	32.48
Merged-chr4-126148446-3	chr4	126147966	126148966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172145, exon 1 of 3)	5' UTR (NM_172145, exon 1 of 3)	463.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	31.46	31.79	30.52	29.69	28.92	25.72	34.85	21.22	19.36
Merged-chr8-119838872-1	chr8	119838372	119839372	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1707.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	228.82	205.51	107.29	241.55	168.41	167.19	198.56	208.26	128.03
Merged-chr2-58567263-3	chr2	58566756	58567756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	-78.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	35.47	16.59	49.95	38.46	24.26	45.01	42.25	16.8	26.85
Merged-chr2-102987147-3	chr2	102986662	102987662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85497.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	45.76	37.78	9.25	73.54	62.98	67.52	61.26	63.23	53.08
Merged-chr5-114567281-3	chr5	114566776	114567776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-975.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	14.3	8.75	0.0	6.75	8.86	8.84	5.28	3.98	5.62
Merged-chr2-120731545-3	chr2	120731067	120732067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026891)	promoter-TSS (NM_026891)	-50.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	62.35	50.23	58.27	80.29	60.18	94.04	79.21	53.5	53.08
Merged-chr14-25841780-3	chr14	25841284	25842284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	-371.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	45.19	50.69	16.65	78.27	63.91	50.64	42.25	48.64	16.86
Merged-chr3-97775060-3	chr3	97774572	97775572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7058.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	101.25	108.28	60.12	95.81	63.91	66.71	103.51	113.64	59.95
Merged-chr13-110394411-3	chr13	110393896	110394896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-648.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	226.53	188.92	156.32	197.69	183.34	147.9	140.47	136.19	76.82
Merged-chr1-152536675-3	chr1	152536157	152537157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	88560.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	94.96	65.89	38.85	87.04	50.85	66.71	81.33	61.02	48.09
Merged-chr8-3646022-3	chr8	3645519	3646519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9751.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	7.44	6.91	9.25	8.1	5.6	8.04	2.11	3.54	6.87
Merged-chr13-40921493-3	chr13	40920997	40921997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	3863.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	36.61	24.42	11.1	64.1	27.06	19.29	42.25	30.51	17.49
Merged-chr8-119425830-3	chr8	119425307	119426307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11355.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	114.98	147.45	116.54	155.86	162.34	162.37	185.89	184.83	84.31
Merged-chr2-29624134-3	chr2	29623629	29624629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	4409.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	422.18	358.49	204.41	350.18	310.69	218.63	295.73	365.23	169.25
Merged-chr7-83859918-3	chr7	83859438	83860438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24403.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	38.9	35.02	29.6	37.78	32.66	36.17	36.97	30.51	39.97
Merged-chr8-70003259-3	chr8	70002770	70003770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6886.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	186.49	184.77	151.69	139.67	89.57	98.06	183.78	190.57	93.05
Merged-chr9-56094961-2	chr9	56094455	56095455	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	4979.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	2.86	0.92	0.0	41.83	32.19	53.85	29.57	32.28	34.35
Merged-chr13-60738114-3	chr13	60737606	60738606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	48258.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	80.09	69.12	64.75	100.53	64.38	73.95	65.48	91.53	64.33
Merged-chr11-4544534-3	chr11	4544065	4545065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	B2_Mm2|SINE|B2	50250.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	29.75	48.38	23.12	37.11	23.33	28.13	49.64	45.1	27.48
Merged-chr3-96300855-3	chr3	96300355	96301355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6886.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	243.12	207.35	136.89	234.13	194.07	146.29	257.71	339.14	148.64
Merged-chr19-32485904-3	chr19	32485402	32486402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010799, exon 1 of 5)	5' UTR (NM_010799, exon 1 of 5)	133.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	65.79	51.61	30.52	98.51	80.24	50.64	65.48	63.23	33.1
Merged-chr2-38998129-3	chr2	38997637	38998637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029687)	promoter-TSS (NM_029687)	-172.0	NM_029687	76646.0	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	50.91	52.07	39.77	89.06	63.45	80.38	67.6	49.08	30.6
Merged-chr10-77978569-3	chr10	77978088	77979088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026431)	promoter-TSS (NM_026431)	-62.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	62.35	42.85	49.95	77.59	42.92	48.23	45.42	37.58	24.98
Merged-chr2-128374140-3	chr2	128373700	128374700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55151.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	316.92	264.95	164.64	321.84	222.52	229.08	247.15	267.07	139.89
Merged-chr17-83705803-3	chr17	83705285	83706285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171053)	promoter-TSS (NM_001171053)	-378.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	231.11	177.4	185.92	231.43	157.68	172.01	242.92	180.85	131.78
Merged-chr11-40755342-3	chr11	40754828	40755828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009831)	promoter-TSS (NM_009831)	-42.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	54.92	51.15	45.32	51.28	55.51	45.01	73.93	54.39	34.35
Merged-chr7-102267475-6	chr7	102266936	102267936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009287)	promoter-TSS (NM_009287)	-388.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	196.21	208.27	191.47	162.61	150.22	143.07	227.08	283.43	114.91
Merged-chr5-143470959-3	chr5	143470446	143471446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	6453.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	106.97	74.19	77.7	121.45	83.51	80.38	95.06	94.62	64.33
Merged-chr6-71831269-3	chr6	71830765	71831765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253681)	promoter-TSS (NM_001253681)	-55.0	NM_001362134	76614.0	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	251.7	240.53	218.29	257.07	235.12	238.73	235.53	240.1	156.76
Merged-chr11-98937613-3	chr11	98937104	98938104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-92.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	236.83	137.77	157.24	221.31	143.68	164.78	197.51	166.25	95.55
Merged-chr6-124829491-3	chr6	124828987	124829987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326594)	promoter-TSS (NM_001326594)	-3.0	NM_013700	22225.0	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	246.56	170.95	126.72	165.98	179.61	148.7	215.46	255.13	117.41
Merged-chr4-41713456-3	chr4	41712946	41713946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	71.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	66.93	52.99	25.9	53.98	56.91	43.4	80.27	40.24	47.46
Merged-chr1-183350037-3	chr1	183349552	183350552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177389, intron 6 of 26)	intron (NM_177389, intron 6 of 26)	19513.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	21.74	24.42	16.65	19.57	14.0	16.08	12.67	13.71	9.99
Merged-chrX-166440709-3	chrX	166440219	166441219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025432)	promoter-TSS (NM_025432)	-15.0	NM_177429	237222.0	Mm.247480	NM_177429	ENSMUSG00000040586	Ofd1	Cxorf5|DXGgc7e|ORF2	OFD1, centriole and centriolar satellite protein	protein-coding	79.52	80.64	70.3	76.24	65.78	54.66	51.75	58.37	32.48
Merged-chr11-98776033-3	chr11	98775526	98776526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-649.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	577.77	446.5	213.66	595.1	396.53	371.35	511.19	592.95	236.07
Merged-chr4-149773671-2	chr4	149773167	149774167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	CpG	600.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	226.53	187.08	144.29	250.32	205.73	165.58	234.47	226.39	133.65
Merged-chr6-87496342-3	chr6	87495874	87496874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175476)	promoter-TSS (NM_175476)	-47.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	43.48	35.02	51.8	40.48	28.92	31.35	43.3	42.89	41.84
Merged-chr5-53509740-3	chr5	53509224	53510224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46055.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	21.74	16.59	5.55	13.49	6.53	6.43	17.96	11.94	3.75
Merged-chr5-69592168-3	chr5	69591679	69592679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359239, intron 1 of 6)	CpG	125.0	NM_001347363	67980.0	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	20.59	27.19	24.05	33.74	25.19	22.51	39.08	29.18	16.24
Merged-chr2-45089685-3	chr2	45089197	45090197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	20580.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	183.63	142.84	99.89	206.46	140.42	116.55	140.47	152.99	84.94
Merged-chr12-111574439-3	chr12	111573949	111574949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	-47.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	148.73	110.59	97.12	91.76	39.65	42.6	95.06	54.83	51.84
Merged-chr19-12012437-3	chr19	12011953	12012953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24287.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	270.01	348.81	156.32	242.22	281.77	174.42	306.29	384.69	148.01
Merged-chr15-55380212-3	chr15	55379703	55380703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 10 of 47)	intron (NM_181277, intron 10 of 47)	72453.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	21.17	31.79	23.12	31.04	22.86	32.96	27.46	31.84	22.48
Merged-chr13-30628836-3	chr13	30628350	30629350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	13807.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	42.33	45.16	33.3	40.48	26.12	41.8	55.98	52.62	33.72
Merged-chrX-122397387-1	chrX	122396887	122397887	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138742)	promoter-TSS (NM_138742)	-2.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	4.58	6.45	3.7	38.46	45.25	15.27	9.51	4.42	0.62
Merged-chr8-126849926-5	chr8	126849396	126850396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151740, exon 2 of 2)	non-coding (NR_151740, exon 2 of 2)	876.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	391.86	303.66	213.66	410.9	272.44	261.23	380.23	407.68	169.25
Merged-chr11-108343969-3	chr11	108343485	108344485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011101)	promoter-TSS (NM_011101)	-97.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	36.04	23.96	40.7	56.0	19.59	21.7	49.64	33.16	26.23
Merged-chr18-7869056-3	chr18	7868486	7869486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146298)	promoter-TSS (NM_001146298)	154.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	234.54	280.16	234.94	244.25	230.46	307.05	274.61	191.02	171.75
Merged-chr7-43642492-1	chr7	43641992	43642992	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	B1_Mus1|SINE|Alu	7753.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	101.83	73.26	56.42	73.54	50.38	55.46	77.1	100.37	64.33
Merged-chr14-45220629-4	chr14	45220032	45221032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	815.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	182.49	151.14	101.74	188.25	115.69	117.35	220.74	217.55	112.42
Merged-chr7-27474672-3	chr7	27474141	27475141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	801.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	80.66	95.38	99.89	58.03	47.12	95.65	89.78	103.91	83.69
Merged-chr2-71581000-5	chr2	71580497	71581497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-34243.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	45.19	55.75	35.15	55.33	41.99	45.82	65.48	69.42	28.1
Merged-chr6-46450556-3	chr6	46450046	46451046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 12 of 23)	B3|SINE|B2	-793850.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	13.16	21.2	16.65	16.87	13.06	28.94	21.12	25.65	22.48
Merged-chr16-96083069-2	chr16	96082557	96083557	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176928)	promoter-TSS (NM_176928)	-629.0	NM_145125	93871.0	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	227.11	120.73	66.6	246.27	159.55	126.19	154.2	89.32	67.45
Merged-chr3-57673722-3	chr3	57673185	57674185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033349, intron 2 of 3)	intron (NM_001033349, intron 2 of 3)	18852.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	29.17	20.74	16.65	15.52	14.93	12.06	22.18	8.84	14.99
Merged-chr15-25606741-3	chr15	25606236	25607236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15814.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	47.48	48.84	27.75	20.92	18.19	37.78	9.51	23.43	20.61
Merged-chr2-44927204-3	chr2	44926691	44927691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-65569.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	326.07	242.83	219.21	333.31	235.12	207.38	299.96	239.21	128.03
Merged-chr17-35897413-3	chr17	35896915	35897915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033630)	promoter-TSS (NM_001033630)	-37.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	33.18	30.87	40.7	61.4	21.93	46.62	68.65	27.41	23.73
Merged-chr12-40555246-3	chr12	40554758	40555758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	109205.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	102.97	136.85	116.54	96.48	122.23	123.78	121.46	171.12	88.06
Merged-chr17-37246876-3	chr17	37246361	37247361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14493.0	NM_146512	258505.0	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	17.73	18.89	17.57	9.45	5.6	4.82	25.35	21.67	12.49
Merged-chr15-100732804-3	chr15	100732306	100733306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045781)	promoter-TSS (NR_045781)	-69.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	208.8	152.06	92.5	168.0	111.03	106.9	121.46	133.98	76.82
Merged-chr4-48044339-2	chr4	48043835	48044835	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-970.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	294.61	311.49	187.77	336.68	437.12	317.5	380.23	454.55	172.99
Merged-chr4-21767156-3	chr4	21766640	21767640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029840)	promoter-TSS (NM_029840)	71.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	9.15	12.44	16.65	26.31	14.0	21.7	33.8	19.9	20.61
Merged-chr9-7825028-3	chr9	7824533	7825533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 4 of 7)	intron (NM_007465, intron 4 of 7)	11773.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	12.59	20.74	2.77	16.87	12.6	4.82	16.9	12.82	12.49
Merged-chr13-34691279-3	chr13	34690762	34691762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38339.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	12.59	12.44	12.02	22.27	12.6	12.06	12.67	8.4	5.0
Merged-chr17-45433711-3	chr17	45433221	45434221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152810)	promoter-TSS (NM_152810)	-14.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	284.31	278.77	184.99	279.33	276.64	219.43	239.75	257.78	123.03
Merged-chr2-14234235-3	chr2	14233719	14234719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	LTR16C|LTR|ERVL	4805.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	74.37	75.11	45.32	77.59	60.65	66.71	99.28	91.97	34.97
Merged-chr2-167093689-3	chr2	167093195	167094195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28402.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	14.3	9.22	1.85	14.84	8.86	9.65	6.34	5.31	9.99
Merged-chr12-84285324-3	chr12	84284855	84285855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029880)	promoter-TSS (NM_029880)	59.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	200.22	182.47	120.24	252.34	238.39	162.37	278.83	310.84	103.67
Merged-chr9-57148285-3	chr9	57147758	57148758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357409)	promoter-TSS (NM_001357409)	47.0	NM_028347	72774.0	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|NEH1|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	131.57	181.55	114.69	149.79	164.68	177.64	139.42	147.68	88.06
Merged-chr1-135631655-3	chr1	135631133	135632133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33857.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	53.2	45.16	42.55	138.99	106.83	146.29	95.06	92.41	63.7
Merged-chr5-143235146-3	chr5	143234659	143235659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289590)	promoter-TSS (NM_001289590)	-4.0	NM_001289589	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	30.89	32.25	37.92	41.16	38.72	61.09	45.42	25.65	9.99
Merged-chr4-54527883-2	chr4	54527383	54528383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-420062.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	18.31	11.98	9.25	25.64	15.39	26.53	1.06	0.0	2.5
Merged-chrX-74270745-3	chrX	74270284	74271284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-32.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	300.33	232.24	124.87	261.12	291.1	139.06	218.63	279.01	126.15
Merged-chr13-21721930-3	chr13	21721399	21722399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-145.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	56.06	66.81	42.55	57.35	39.65	74.75	90.83	77.82	69.95
Merged-chr18-38397054-3	chr18	38396566	38397566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21841.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	56.06	42.85	54.57	50.6	29.86	57.07	58.09	67.65	61.2
Merged-chr4-9643706-3	chr4	9643216	9644216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177852)	promoter-TSS (NM_001177852)	1.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	77.23	41.47	44.4	103.91	75.57	72.34	203.84	226.83	88.06
Merged-chr2-129893572-4	chr2	129893114	129894114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92155.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	61.78	77.87	38.85	74.22	55.05	97.26	58.09	64.56	53.71
Merged-chr8-80325423-3	chr8	80324944	80325944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168601.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	22.88	38.71	31.45	30.36	32.19	55.46	33.8	29.63	35.6
Merged-chr13-52062104-3	chr13	52061598	52062598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-34643.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	76.66	82.02	73.07	69.5	54.58	118.16	74.99	57.48	68.07
Merged-chr11-29374292-3	chr11	29373810	29374810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176841, exon 1 of 32)	5' UTR (NM_176841, exon 1 of 32)	138.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	96.11	88.93	107.29	72.87	90.04	110.12	102.45	83.57	49.96
Merged-chr1-131975777-3	chr1	131975259	131976259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	5150.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	279.73	193.99	176.67	255.04	168.41	196.12	259.82	250.71	156.76
Merged-chr9-22389267-3	chr9	22388693	22389693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028390)	promoter-TSS (NM_028390)	13.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	86.38	108.75	92.5	92.44	104.03	114.94	123.57	112.75	67.45
Merged-chr6-97479045-3	chr6	97478564	97479564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	8756.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	286.03	171.87	137.82	304.3	175.41	176.03	290.45	243.63	108.04
Merged-chr12-69538109-3	chr12	69537548	69538548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44980.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	87.52	51.15	29.6	138.32	108.7	79.58	95.06	73.84	30.6
Merged-chr9-70657276-3	chr9	70656790	70657790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172772)	promoter-TSS (NM_172772)	-116.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	209.94	191.23	151.69	224.68	177.74	163.17	221.8	163.16	128.03
Merged-chr2-73553054-3	chr2	73552552	73553552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23565.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	41.19	57.6	17.57	41.83	61.11	38.58	47.53	44.66	26.85
Merged-chr7-118704427-2	chr7	118703960	118704960	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1278.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	64.07	60.82	25.9	91.76	69.98	51.44	321.08	321.01	127.4
Merged-chr1-149954161-3	chr1	149953667	149954667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	7123.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	58.35	44.24	63.82	49.25	37.32	47.42	46.47	38.47	49.34
Merged-chr17-48347470-3	chr17	48346993	48347993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031254, intron 1 of 4)	intron (NM_031254, intron 1 of 4)	1092.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	21.74	23.04	31.45	51.28	45.25	50.64	42.25	42.01	24.98
Merged-chr7-127477982-3	chr7	127477458	127478458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6344.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	333.51	229.01	191.47	263.81	192.2	200.95	231.3	240.98	145.51
Merged-chr1-53851545-3	chr1	53851069	53852069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	2145.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	166.47	118.88	54.57	189.6	111.03	106.1	137.3	91.53	66.82
Merged-chr4-143162233-3	chr4	143161725	143162725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 5 of 7)	CpG-10608	-26063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	120.7	96.3	111.92	106.61	91.9	90.02	115.12	74.73	59.33
Merged-chr8-84104967-3	chr8	84104471	84105471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357322)	promoter-TSS (NM_001357322)	-174.0	NM_172502	212123.0	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	65.79	46.54	34.22	48.58	33.59	53.05	46.47	33.6	21.86
Merged-chr2-140794206-5	chr2	140793753	140794753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	RMER17C2|LTR|ERVK	-122777.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.29	6.45	5.55	13.49	4.67	17.68	10.56	3.98	7.49
Merged-chr5-136962168-3	chr5	136961680	136962680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025562, exon 1 of 5)	5' UTR (NM_025562, exon 1 of 5)	103.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	65.79	77.87	114.69	91.76	77.44	112.53	145.75	124.69	85.56
Merged-chr7-143757109-3	chr7	143756622	143757622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9871.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	10.87	2.3	3.7	8.1	2.8	11.25	4.22	3.98	3.75
Merged-chr9-100452688-3	chr9	100452176	100453176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33797.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	84.09	79.72	38.85	109.98	99.83	72.34	67.6	48.64	19.98
Merged-chr10-117831073-3	chr10	117830590	117831590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	14884.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	86.38	109.21	67.52	81.64	86.77	70.73	83.44	105.24	69.95
Merged-chr16-45644668-1	chr16	45644168	45645168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 2 of 5)	intron (NM_145389, intron 2 of 5)	9450.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	3.43	0.92	7.4	2.7	3.27	4.02	8.45	10.17	12.49
Merged-chr2-22749973-3	chr2	22749493	22750493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24334.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	60.07	56.68	43.47	57.35	39.19	43.4	38.02	40.24	49.96
Merged-chr8-85036838-3	chr8	85036358	85037358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122843)	promoter-TSS (NM_001122843)	-57.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	56.06	59.9	56.42	99.18	65.31	64.3	101.39	93.3	74.32
Merged-chr5-64677173-3	chr5	64676669	64677669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66470.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	147.02	130.4	77.7	94.46	70.44	104.49	130.97	114.52	76.82
Merged-chr11-45752987-3	chr11	45752507	45753507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55076.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	129.28	130.86	51.8	172.73	135.29	91.63	134.14	128.23	51.84
Merged-chr11-53567368-3	chr11	53566866	53567866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290805)	promoter-TSS (NM_001290805)	-3.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	18.88	11.52	16.65	39.81	19.59	18.49	14.79	18.57	6.25
Merged-chr3-10439611-3	chr3	10439117	10440117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127191, intron 1 of 6)	CpG	513.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	76.08	46.08	24.05	109.98	69.51	60.28	82.38	41.56	26.23
Merged-chr18-46447798-3	chr18	46447290	46448290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18026.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	60.64	44.24	31.45	83.66	73.24	68.32	74.99	56.6	21.23
Merged-chr4-132802426-3	chr4	132801938	132802938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6074.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	137.86	133.17	102.67	112.0	81.17	97.26	114.07	141.94	77.44
Merged-chr18-70436009-1	chr18	70435509	70436509	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-36445.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	68.65	65.43	42.55	43.18	29.39	41.8	61.26	83.57	55.58
Merged-chr8-68247159-1	chr8	68246659	68247659	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29369.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.57	0.46	1.85	4.72	0.93	4.82	5.28	0.88	0.0
Merged-chr11-62576679-3	chr11	62576153	62577153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011706, intron 2 of 15)	intron (NM_011706, intron 2 of 15)	2167.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	139.01	145.15	118.39	133.59	130.16	127.8	119.35	133.09	85.56
Merged-chr5-149678365-3	chr5	149677860	149678860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081204, exon 1 of 15)	exon (NM_001081204, exon 1 of 15)	103.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	50.34	47.46	48.1	79.62	37.32	51.44	105.62	22.55	21.23
Merged-chr17-69222544-3	chr17	69222057	69223057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	54649.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	208.23	187.08	117.47	188.92	175.87	149.5	243.98	224.62	109.92
Merged-chr6-125008952-3	chr6	125008480	125009480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175557)	promoter-TSS (NM_175557)	-258.0	NM_001252083	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	302.62	162.2	209.04	303.62	125.96	206.57	269.33	160.95	133.65
Merged-chr7-16452831-3	chr7	16452356	16453356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026938)	promoter-TSS (NM_026938)	77.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	30.32	41.47	23.12	37.11	29.86	58.68	34.85	21.22	23.73
Merged-chr4-129556642-3	chr4	129556141	129557141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010693, intron 5 of 11)	intron (NM_010693, intron 5 of 11)	1170.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	32.04	18.89	27.75	29.69	29.86	32.15	16.9	13.27	16.24
Merged-chr7-46710608-3	chr7	46710082	46711082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030233)	promoter-TSS (NM_030233)	69.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	10.87	13.82	16.65	10.8	15.86	17.68	10.56	9.73	7.49
Merged-chr16-27349506-3	chr16	27349010	27350010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198112, intron 4 of 4)	intron (NM_198112, intron 4 of 4)	20729.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	41.19	58.06	40.7	31.04	33.12	36.97	35.91	53.06	21.23
Merged-chr2-165405569-3	chr2	165405076	165406076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054055, exon 13 of 13)	3' UTR (NM_054055, exon 13 of 13)	-5182.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	104.69	114.74	141.52	111.33	108.23	115.75	88.72	90.64	84.31
Merged-chr10-80935542-3	chr10	80935062	80936062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5471.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	34.32	10.14	11.1	24.29	10.26	8.04	23.24	11.05	6.87
Merged-chr5-16552797-3	chr5	16552306	16553306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010427)	promoter-TSS (NM_010427)	-689.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	105.83	121.65	67.52	120.77	123.62	113.33	92.94	139.72	56.83
Merged-chr10-79097693-3	chr10	79097182	79098182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359717)	promoter-TSS (NM_001359717)	-82.0	NM_001004362	72128.0	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	44.62	45.62	36.07	47.9	45.25	30.54	63.37	58.81	27.48
Merged-chr8-122934152-3	chr8	122933649	122934649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	MT2B|LTR|ERVL	85775.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	83.52	78.33	70.3	91.09	40.12	37.78	47.53	39.35	51.21
Merged-chr11-120633646-3	chr11	120633152	120634152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010756)	promoter-TSS (NM_010756)	-105.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	317.49	171.41	228.46	348.83	159.08	119.76	278.83	162.72	106.17
Merged-chr14-25694067-3	chr14	25693562	25694562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	-108.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	24.6	15.21	18.5	27.66	15.86	21.7	25.35	17.24	10.62
Merged-chr17-34122373-5	chr17	34121802	34122802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010386)	promoter-TSS (NM_010386)	305.0	NM_001204973	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	692.18	523.45	375.53	738.14	489.37	361.7	567.17	565.09	297.28
Merged-chr11-9011147-3	chr11	9010670	9011670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303532)	promoter-TSS (NM_001303532)	21.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	22.88	16.59	7.4	16.19	15.86	21.7	21.12	5.75	5.62
Merged-chr14-8093591-3	chr14	8093095	8094095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4616.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	62.93	76.49	68.45	78.27	78.84	84.4	110.9	101.26	76.19
Merged-chr10-57746473-3	chr10	57745974	57746974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38449.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	137.86	146.53	71.22	167.33	154.41	131.82	105.62	140.61	58.08
Merged-chr2-25557782-3	chr2	25557280	25558280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021519)	promoter-TSS (NM_021519)	-120.0	NM_021519	59022.0	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	394.14	355.26	216.44	450.71	420.32	285.34	410.86	382.47	172.99
Merged-chr5-105496364-3	chr5	105495858	105496858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-23113.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	94.39	59.44	36.07	101.21	40.59	32.15	10.56	7.52	2.5
Merged-chr19-8984577-3	chr19	8984084	8985084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4700.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	92.67	72.34	22.2	90.41	39.65	48.23	34.85	49.96	45.59
Merged-chr2-12301899-3	chr2	12301363	12302363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	81.0	NR_138462	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	7.44	2.76	0.0	4.72	0.47	7.23	2.11	0.88	0.0
Merged-chr18-36720119-3	chr18	36719616	36720616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6699.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	30.32	44.24	39.77	35.76	21.93	41.8	24.29	18.57	34.35
Merged-chr10-117746396-3	chr10	117745899	117746899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-41.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	56.06	58.06	31.45	40.48	35.45	60.28	79.21	71.19	63.7
Merged-chr14-47276958-3	chr14	47276475	47277475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172598)	promoter-TSS (NM_172598)	-118.0	NM_172598	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	224.25	178.32	155.39	232.1	204.33	187.28	185.89	195.88	118.04
Merged-chr8-33385633-3	chr8	33385142	33386142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-115.0	NM_011721	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	85.81	77.41	62.9	77.59	72.78	84.4	117.24	100.81	76.82
Merged-chr16-87661286-3	chr16	87660793	87661793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37661.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	165.32	155.28	110.07	230.08	181.47	195.32	200.68	184.38	113.66
Merged-chr3-36853396-1	chr3	36852896	36853896	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-9710.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	1.14	1.38	0.0	37.78	40.12	44.21	22.18	11.05	1.87
Merged-chr2-32424148-3	chr2	32423637	32424637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290558)	promoter-TSS (NM_001290558)	-71.0	NM_001290558	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	42.33	29.49	24.97	34.41	32.19	20.9	30.63	15.92	15.61
Merged-chr3-89960640-3	chr3	89960138	89961138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081182, intron 2 of 27)	CpG	2694.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	16.02	12.44	9.25	16.19	4.67	4.82	3.17	5.31	9.37
Merged-chr19-61265510-3	chr19	61265018	61266018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37100.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	49.77	57.14	36.07	42.51	64.38	57.87	45.42	76.94	40.59
Merged-chr11-72458151-3	chr11	72457637	72458637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 5 of 12)	intron (NM_153060, intron 5 of 12)	16810.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	81.23	66.81	72.15	68.82	60.18	80.38	68.65	45.99	42.47
Merged-chr9-85326132-3	chr9	85325638	85326638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160379, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	986.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	137.86	198.6	110.07	151.14	148.82	107.71	192.23	192.34	133.65
Merged-chr11-58955109-3	chr11	58954612	58955612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	427.0	NM_178218	319162.0	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	235.69	317.02	183.14	209.16	278.51	226.67	242.92	327.2	146.14
Merged-chr11-69758264-3	chr11	69757753	69758753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291068, exon 1 of 29)	5' UTR (NM_001291068, exon 1 of 29)	380.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	81.23	37.78	38.85	82.32	39.65	46.62	64.43	53.94	36.22
Merged-chr16-55975106-3	chr16	55974605	55975605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	-488.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	356.39	412.86	244.19	354.23	459.51	254.8	256.65	324.55	164.25
Merged-chr3-129536392-3	chr3	129535881	129536881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-3993.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	2.29	11.52	4.62	15.52	5.6	8.04	3.17	4.86	5.0
Merged-chr18-32375599-3	chr18	32375107	32376107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 1 of 2)	intron (NR_045403, intron 1 of 2)	-1610.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	32.04	23.04	35.15	21.59	20.53	28.13	29.57	31.84	35.6
Merged-chr15-79141280-3	chr15	79140793	79141793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310579)	promoter-TSS (NM_001310579)	-32.0	NM_027231	69833.0	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	19.45	19.35	24.05	23.62	15.86	26.53	28.52	18.13	14.99
Merged-chr7-128312849-3	chr7	128312360	128313360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-14729.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	81.8	35.02	38.85	74.89	30.79	44.21	76.05	68.09	20.61
Merged-chr8-105636377-3	chr8	105635870	105636870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181322)	promoter-TSS (NM_181322)	-168.0	NM_181322	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	264.29	185.24	180.37	255.72	97.97	150.31	214.41	114.08	114.91
Merged-chr10-21605167-3	chr10	21604664	21605664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	12019.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	113.27	70.96	64.75	111.33	58.78	69.93	122.52	109.66	71.82
Merged-chr5-34573687-3	chr5	34573183	34574183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331081)	promoter-TSS (NM_001331081)	19.0	NM_001331086	11518.0	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	52.63	44.7	55.5	45.21	37.79	51.44	64.43	33.16	46.84
Merged-chr5-100500787-3	chr5	100500290	100501290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172714)	promoter-TSS (NM_172714)	-151.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	97.82	63.59	63.82	99.86	73.24	57.87	86.61	68.09	36.85
Merged-chr10-76531460-3	chr10	76530941	76531941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146006)	promoter-TSS (NM_146006)	-164.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	24.03	16.59	6.47	30.36	24.26	25.72	32.74	23.88	12.49
Merged-chr9-22071435-3	chr9	22070957	22071957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310759)	promoter-TSS (NM_001310759)	-81.0	NM_001310759	319601.0	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	208.8	182.01	170.19	186.22	160.95	166.38	152.09	138.4	109.92
Merged-chr6-70792891-3	chr6	70792380	70793380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009075)	promoter-TSS (NM_009075)	-705.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	85.24	121.65	87.87	109.3	108.23	85.2	130.97	144.15	56.21
Merged-chr15-8636207-3	chr15	8635732	8636732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_148938, exon 10 of 10)	exon (NM_148938, exon 10 of 10)	74575.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	163.04	170.03	99.89	130.22	119.89	109.32	202.79	278.57	104.92
Merged-chr12-54405255-3	chr12	54404756	54405756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13938.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	30.89	52.53	23.12	60.05	85.84	51.44	97.17	100.81	63.08
Merged-chr11-26639690-2	chr11	26639187	26640187	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-45767.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	20.59	24.42	24.97	73.54	62.98	60.28	120.41	116.29	67.45
Merged-chr13-116949698-3	chr13	116949205	116950205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	75811.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	56.63	32.25	31.45	20.24	8.4	16.08	23.24	15.48	23.11
Merged-chr1-107584042-3	chr1	107583596	107584596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5910.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	58.35	95.38	37.0	53.3	37.79	52.25	58.09	49.08	46.22
Merged-chr7-105777911-3	chr7	105777406	105778406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	intron (NM_001162943, intron 1 of 20)	9644.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	50.34	35.02	25.9	56.0	44.78	53.05	68.65	45.54	21.86
Merged-chr4-41135968-3	chr4	41135468	41136468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-53.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	156.17	105.52	169.27	158.56	124.56	169.6	241.87	119.39	123.03
Merged-chr9-48390111-1	chr9	48389611	48390611	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172921, intron 4 of 8)	intron (NM_172921, intron 4 of 8)	28070.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.57	1.38	1.85	1.35	1.87	0.0	45.42	39.8	27.48
Merged-chr11-32642866-1	chr11	32642366	32643366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001271349, exon 1 of 12)	5' UTR (NM_001271349, exon 1 of 12)	311.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	489.11	486.13	432.88	425.07	391.87	385.82	461.55	355.94	299.15
Merged-chr16-59639254-3	chr16	59638764	59639764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019665)	promoter-TSS (NM_019665)	75.0	NM_019665	56297.0	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	44.62	41.93	63.82	62.07	43.39	46.62	72.88	79.15	47.46
Merged-chr10-127070359-3	chr10	127069861	127070861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025982)	promoter-TSS (NM_025982)	-100.0	NM_025982	67125.0	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	86.38	73.26	49.02	68.82	51.78	61.09	80.27	76.94	23.11
Merged-chr16-92801062-3	chr16	92800556	92801556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	25018.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	46.91	20.27	26.82	64.1	37.32	28.13	36.97	27.86	14.99
Merged-chr16-30789142-3	chr16	30788646	30789646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189423.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	111.55	134.55	75.85	111.33	86.3	104.49	85.55	121.6	91.81
Merged-chr11-53519834-3	chr11	53519325	53520325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252332)	promoter-TSS (NM_001252332)	89.0	NM_001347496	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	145.3	87.09	58.27	153.16	95.17	120.57	103.51	59.25	42.47
Merged-chr5-117486282-3	chr5	117485761	117486761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	72259.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	89.81	93.08	50.87	60.72	33.59	58.68	50.7	43.77	41.84
Merged-chr16-11346379-3	chr16	11345864	11346864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	23460.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	66.36	47.92	39.77	59.38	44.78	46.62	36.97	35.82	32.48
Merged-chr19-3914732-3	chr19	3914236	3915236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 9 of 9)	intron (NM_026316, intron 9 of 9)	-1962.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	137.86	105.98	84.17	122.8	96.57	105.3	142.59	110.1	72.45
Merged-chr11-3145786-2	chr11	3145277	3146277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 15 of 32)	URR1B|DNA|hAT-Charlie	21756.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	64.64	89.39	107.29	85.69	111.96	149.5	0.0	1.33	152.38
Merged-chr11-117962272-3	chr11	117961720	117962720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7146.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	78.37	106.9	96.2	103.23	66.71	77.97	77.1	62.35	59.95
Merged-chr7-141221852-3	chr7	141221353	141222353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029793)	promoter-TSS (NR_029793)	-360.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	13.16	2.3	6.47	6.07	1.87	12.86	4.22	3.54	8.74
Merged-chr6-115375853-2	chr6	115375365	115376365	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	Lx8b|LINE|L1	13516.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	53.77	48.84	30.52	58.7	48.52	32.15	55.98	71.63	25.61
Merged-chr9-78527496-3	chr9	78526998	78527998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45774.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	301.47	279.24	165.57	279.33	259.85	199.34	288.34	342.24	144.27
Merged-chr3-142577290-3	chr3	142576803	142577803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	16947.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	35.47	53.45	61.97	34.41	26.59	49.83	53.87	51.73	32.48
Merged-chr12-52097777-3	chr12	52097283	52098283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029760)	promoter-TSS (NM_029760)	37.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	24.6	36.4	31.45	33.74	32.19	49.83	47.53	39.35	31.23
Merged-chr1-136673533-3	chr1	136673042	136674042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9854.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	85.24	86.63	66.6	80.29	72.78	65.11	111.96	127.34	73.69
Merged-chr5-146777242-3	chr5	146776718	146777718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	17738.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	46.34	61.75	59.2	45.21	47.58	42.6	60.2	74.73	56.83
Merged-chr4-119422359-3	chr4	119421858	119422858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	62.0	NM_001355214	106564.0	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	61.78	58.98	55.5	72.87	97.5	83.59	90.83	83.57	37.47
Merged-chr3-158031747-3	chr3	158031245	158032245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	27.0	NM_001356997	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	393.57	386.6	297.84	342.76	360.61	291.78	369.66	340.47	223.58
Merged-chr11-98775423-3	chr11	98774923	98775923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145434)	promoter-TSS (NM_145434)	-46.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	651.57	532.67	277.49	679.44	474.44	426.01	516.47	677.84	272.92
Merged-chr12-85599727-3	chr12	85599234	85600234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205053)	promoter-TSS (NM_001205053)	-284.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	204.8	143.3	129.49	209.84	127.82	162.37	212.29	163.16	87.43
Merged-chr2-122146856-3	chr2	122146363	122147363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009735)	promoter-TSS (NM_009735)	-824.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	286.6	407.79	210.89	244.25	264.51	228.28	293.62	432.0	187.98
Merged-chr19-5924155-3	chr19	5923678	5924678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026772, intron 1 of 1)	intron (NM_026772, intron 1 of 1)	638.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	116.7	97.69	95.27	111.33	80.71	134.23	85.55	116.29	86.18
Merged-chr5-24577484-3	chr5	24576925	24577925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	42.0	NM_013853	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	81.23	64.51	78.62	68.82	66.71	61.09	106.67	86.66	56.21
Merged-chr18-46198982-3	chr18	46198551	46199551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170855)	promoter-TSS (NM_001170855)	-233.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	40.62	23.96	34.22	36.43	16.79	30.54	59.15	44.22	31.85
Merged-chr4-10923388-3	chr4	10922885	10923885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48887.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	65.21	84.32	66.6	46.56	46.65	62.7	50.7	66.77	40.59
Merged-chr13-43790824-3	chr13	43790310	43791310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	5698.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	255.14	170.49	90.65	239.52	182.4	133.43	192.23	196.76	84.31
Merged-chr12-110889794-3	chr12	110889300	110890300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027223)	promoter-TSS (NM_027223)	536.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	475.95	405.03	369.06	430.47	332.15	277.31	339.04	369.21	184.86
Merged-chr9-37348409-3	chr9	37347924	37348924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081429)	promoter-TSS (NM_001081429)	-32.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	175.05	211.5	141.52	153.84	199.2	135.04	207.01	208.7	149.26
Merged-chr10-94601189-3	chr10	94600681	94601681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14982.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	8.01	2.3	9.25	10.8	8.86	15.27	9.51	9.73	6.87
Merged-chr2-30658614-3	chr2	30658109	30659109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_136917, exon 4 of 4)	non-coding (NR_136917, exon 4 of 4)	19402.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	262.0	306.42	109.14	264.49	293.9	184.07	164.76	217.55	115.54
Merged-chr9-124279796-3	chr9	124279279	124280279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32915.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	81.8	114.74	67.52	78.94	90.97	76.36	111.96	152.11	61.2
Merged-chr3-22073277-3	chr3	22072764	22073764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3388.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	31.46	17.97	27.75	18.22	10.26	19.29	23.24	20.34	19.98
Merged-chr17-63864411-3	chr17	63863915	63864915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	CpG	434.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	220.81	197.22	178.52	184.87	161.88	132.63	237.64	225.06	168.0
Merged-chr6-59208875-3	chr6	59208384	59209384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081145)	promoter-TSS (NM_001081145)	14.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	247.7	265.87	169.27	256.39	257.05	166.38	193.28	225.51	123.66
Merged-chr5-146781838-3	chr5	146781324	146782324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	13132.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	103.54	143.76	65.67	106.61	128.29	67.52	122.52	166.7	73.07
Merged-chr18-36515329-1	chr18	36514829	36515829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 1 of 5)	CpG	476.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	113.27	91.7	71.22	122.8	65.31	74.75	151.03	101.26	53.71
Merged-chr11-71817633-3	chr11	71817147	71818147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66632.0	NM_001357965	216881.0	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	26.31	35.94	7.4	29.01	20.99	11.25	26.4	27.86	11.24
Merged-chr13-48978013-3	chr13	48977518	48978518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	9906.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	62.93	52.99	40.7	47.23	44.78	37.78	73.93	64.56	33.1
Merged-chr9-65568887-3	chr9	65568363	65569363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	MTD|LTR|ERVL-MaLR	11224.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	435.9	317.48	202.56	392.69	256.58	218.63	302.07	386.01	199.85
Merged-chr3-96263289-3	chr3	96262748	96263748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	69.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	337.51	295.36	237.71	325.21	301.83	204.97	299.96	367.44	177.99
Merged-chr1-156560685-3	chr1	156560185	156561185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	1898.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	108.69	100.91	109.14	116.73	95.17	77.16	196.45	263.09	124.91
Merged-chr15-86202054-3	chr15	86201503	86202503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12456.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	375.27	300.43	219.21	406.18	321.42	320.71	284.11	326.32	153.63
Merged-chr5-76906044-3	chr5	76905547	76906547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	-533.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	302.62	340.98	320.96	252.34	279.44	276.5	321.08	382.03	180.49
Merged-chr1-154032835-3	chr1	154032323	154033323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132894.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	93.82	76.95	84.17	91.09	46.18	88.42	67.6	57.04	38.72
Merged-chr2-179978143-1	chr2	179977643	179978643	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033782, exon 2 of 2)	non-coding (NR_033782, exon 2 of 2)	1290.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	18.31	25.8	25.9	20.24	12.6	15.27	26.4	14.59	27.48
Merged-chr11-12535736-3	chr11	12535239	12536239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70779.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	16.59	10.6	8.32	6.07	7.46	10.45	12.67	9.73	3.75
Merged-chr17-66111617-3	chr17	66111128	66112128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-17.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	96.11	83.4	74.92	117.4	125.49	98.87	166.88	95.51	39.97
Merged-chr10-126978582-3	chr10	126978100	126979100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113470)	promoter-TSS (NM_001113470)	-117.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	18.88	37.32	71.22	39.13	30.79	50.64	47.53	36.26	43.72
Merged-chr9-75441508-3	chr9	75441012	75442012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039522)	promoter-TSS (NM_001039522)	-12.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	121.85	103.22	120.24	148.44	97.97	122.18	139.42	103.91	67.45
Merged-chr14-61518861-3	chr14	61518377	61519377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	26189.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	18.88	11.06	6.47	18.22	12.13	11.25	5.28	7.52	13.12
Merged-chr1-165644565-3	chr1	165644067	165645067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10026.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	52.63	46.08	45.32	63.42	37.32	68.32	48.58	74.28	33.72
Merged-chr2-103569952-3	chr2	103569464	103570464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	3654.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	6.86	5.99	7.4	4.72	1.4	6.43	6.34	7.52	11.87
Merged-chr17-8144108-3	chr17	8143643	8144643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 2 of 8)	intron (NM_026611, intron 2 of 8)	3645.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	82.95	95.84	90.65	80.97	68.11	60.28	106.67	90.64	58.08
Merged-chr14-75787052-3	chr14	75786573	75787573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026232)	promoter-TSS (NM_026232)	-36.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	84.66	96.76	75.85	84.34	97.5	119.76	101.39	130.88	54.96
Merged-chr5-4531255-1	chr5	4530755	4531755	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	226961.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.86	23.5	16.65	42.51	45.72	79.58	25.35	30.51	49.34
Merged-chr7-25706494-3	chr7	25706016	25707016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12537.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	207.66	182.47	160.02	219.96	171.21	204.16	161.6	227.27	136.77
Merged-chr4-132247704-3	chr4	132247203	132248203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 3 of 10)	intron (NM_001122992, intron 3 of 10)	13846.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	21.74	14.75	7.4	12.82	13.06	7.23	23.24	21.22	9.99
Merged-chr4-134098818-3	chr4	134098317	134099317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3744.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	232.25	216.11	177.59	159.23	109.63	122.18	200.68	242.75	133.65
Merged-chr15-51729077-3	chr15	51728562	51729562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136399.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	73.22	64.51	47.17	56.68	27.06	41.8	23.24	41.12	36.85
Merged-chr11-102946784-3	chr11	102946296	102947296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011795)	promoter-TSS (NM_011795)	-335.0	NM_011795	23829.0	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	8.58	2.76	5.55	8.77	1.4	0.0	2.11	0.44	2.5
Merged-chr8-85081430-3	chr8	85080930	85081930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	467.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	243.69	270.94	260.84	197.02	135.29	197.73	175.33	188.36	111.79
Merged-chr7-128392503-3	chr7	128391980	128392980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25692.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	336.94	264.03	212.74	265.84	202.0	201.75	224.97	233.46	161.75
Merged-chr1-74375154-3	chr1	74374652	74375652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013612)	promoter-TSS (NM_013612)	-51.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	271.73	197.22	169.27	328.59	171.68	196.93	273.55	256.9	139.89
Merged-chrX-77510886-3	chrX	77510334	77511334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020601)	promoter-TSS (NM_020601)	-393.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	83.52	73.73	61.05	97.16	43.39	67.52	114.07	78.26	63.08
Merged-chr5-90897607-3	chr5	90897138	90898138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6261.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	100.11	114.27	70.3	132.24	121.76	91.63	101.39	77.82	67.45
Merged-chr18-6516176-3	chr18	6515686	6516686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	-78.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	187.06	246.98	165.57	189.6	215.06	213.81	185.89	188.36	176.12
Merged-chr5-123886612-3	chr5	123886098	123887098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6578.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	34.9	18.89	1.85	30.36	12.6	6.43	12.67	10.61	3.75
Merged-chr1-170175062-3	chr1	170174564	170175564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305045)	promoter-TSS (NM_001305045)	-100.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	217.38	201.36	147.99	296.2	268.71	199.34	271.44	270.61	137.4
Merged-chr19-60940142-3	chr19	60939640	60940640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	50391.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	36.04	69.12	61.97	59.38	62.05	65.11	48.58	38.91	58.71
Merged-chr15-89476181-3	chr15	89475677	89476677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077233)	promoter-TSS (NR_077233)	-75.0	NR_077233	100532730.0	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	56.06	82.94	83.25	94.46	102.63	97.26	121.46	108.77	64.33
Merged-chrX-101954320-3	chrX	101953808	101954808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	104923.0	NM_001163610	100042480.0	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|Gm10456	NHS-like 2	protein-coding	9.15	5.53	3.7	11.47	4.67	1.61	9.51	3.54	1.87
Merged-chr18-49834174-3	chr18	49833695	49834695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 1 of 42)	intron (NM_001081371, intron 1 of 42)	1198.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	103.54	105.98	68.45	137.64	123.62	74.75	95.06	133.53	44.34
Merged-chr7-46833461-3	chr7	46832946	46833946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12358.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	60.07	88.93	83.25	114.7	128.29	81.99	146.81	111.87	61.83
Merged-chr14-30435561-3	chr14	30435070	30436070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-22466.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	7.44	6.91	10.17	10.12	6.53	4.82	8.45	14.59	5.62
Merged-chr11-70844782-3	chr11	70844287	70845287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291143)	promoter-TSS (NM_001291143)	26.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	151.02	71.88	116.54	143.71	84.9	112.53	126.74	70.75	62.45
Merged-chr16-23296981-3	chr16	23296489	23297489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	6519.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	52.06	74.65	77.7	84.34	64.84	65.91	62.31	90.64	66.82
Merged-chr8-46818333-3	chr8	46817821	46818821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	78576.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	76.08	48.38	42.55	73.54	52.72	49.03	44.36	50.41	54.33
Merged-chr10-127641977-3	chr10	127641496	127642496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-990.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	151.59	66.35	61.97	148.44	74.64	103.69	120.41	108.33	60.58
Merged-chr17-67474157-3	chr17	67473652	67474652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119661.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	26.89	56.22	20.35	37.11	40.12	33.76	41.19	44.66	25.61
Merged-chr13-81657688-3	chr13	81657188	81658188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-118.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	294.61	301.81	161.87	252.34	193.13	161.56	219.69	203.84	94.93
Merged-chr19-61228474-3	chr19	61227979	61228979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-61.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	282.02	186.16	177.59	287.43	166.08	172.81	320.02	275.03	164.25
Merged-chr15-59759824-3	chr15	59759313	59760313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35146.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	14.87	7.83	10.17	19.57	11.66	29.74	17.96	4.86	7.49
Merged-chr6-128887538-3	chr6	128887029	128888029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289707)	promoter-TSS (NM_001289707)	-58.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	56.06	47.0	19.42	39.13	33.59	49.03	41.19	47.31	24.98
Merged-chr5-125405147-3	chr5	125404656	125405656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15139.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	176.76	228.09	126.72	218.61	248.18	162.37	250.32	315.71	134.27
Merged-chr2-181186765-3	chr2	181186267	181187267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151465)	promoter-TSS (NR_151465)	-55.0	NR_151465	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	79.52	83.86	95.27	69.5	76.04	110.92	80.27	149.89	59.95
Merged-chr12-78868317-3	chr12	78867819	78868819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026114, intron 2 of 7)	RLTR35B_MM|LTR|ERVL	6247.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	32.04	46.54	38.85	36.43	34.52	40.99	45.42	43.77	56.21
Merged-chr6-83413240-4	chr6	83412738	83413738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-12136.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	65.21	57.14	30.52	45.21	29.39	23.31	36.97	35.37	28.73
Merged-chr10-80150461-1	chr10	80149961	80150961	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 2 of 7)	CpG-1261	779.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	29.75	30.41	52.72	24.96	10.26	21.7	33.8	27.86	47.46
Merged-chr15-101279603-1	chr15	101279103	101280103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4698.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	1.72	0.92	2.77	0.0	0.93	0.0	1.06	0.0	2.5
Merged-chr6-5211881-3	chr6	5211386	5212386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17940.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	6.29	17.97	17.57	16.87	13.53	16.08	13.73	8.84	11.87
Merged-chr8-8689993-3	chr8	8689509	8690509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106114)	TTS (NR_106114)	153.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	295.18	225.32	193.32	277.98	239.32	182.46	268.27	158.3	126.78
Merged-chr4-145254582-3	chr4	145254070	145255070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-7700.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	25.74	21.2	3.7	40.48	16.79	23.31	28.52	15.92	7.49
Merged-chr4-16214144-3	chr4	16213642	16214642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 3 of 6)	MTD|LTR|ERVL-MaLR	50032.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	23.45	27.19	12.95	33.74	12.6	24.92	26.4	13.27	19.36
Merged-chr12-81859896-3	chr12	81859394	81860394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018814)	promoter-TSS (NM_018814)	-136.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	47.48	22.58	24.05	47.9	23.33	28.94	52.81	13.71	15.61
Merged-chr8-11558205-3	chr8	11557683	11558683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302459)	promoter-TSS (NM_001302459)	-227.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	137.29	132.25	116.54	101.88	94.23	97.26	124.63	107.0	94.3
Merged-chr5-107869140-3	chr5	107868649	107869649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	CpG	5958.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	94.96	90.31	113.77	78.94	75.11	78.77	101.39	74.73	58.08
Merged-chr6-76268295-3	chr6	76267795	76268795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-974182.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	76.08	78.79	47.17	95.14	69.04	53.85	59.15	60.58	31.85
Merged-chr7-125555666-3	chr7	125555168	125556168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	3386.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	152.17	127.64	92.5	135.62	108.7	98.06	129.91	129.11	84.31
Merged-chr18-3281129-3	chr18	3280635	3281635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311067)	promoter-TSS (NM_001311067)	-3.0	NM_001311067	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	299.76	432.22	211.81	276.63	379.27	252.39	312.63	426.69	149.26
Merged-chr13-49309267-3	chr13	49308772	49309772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015759)	promoter-TSS (NM_015759)	-64.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	175.62	149.75	124.87	169.35	157.68	98.06	163.71	221.97	115.54
Merged-chr8-105393950-3	chr8	105393460	105394460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 4 of 15)	intron (NM_001301173, intron 4 of 15)	18579.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	62.35	54.83	35.15	55.33	44.78	27.33	61.26	41.12	30.6
Merged-chr15-103453696-3	chr15	103453192	103454192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153505)	promoter-TSS (NM_153505)	-133.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	53.77	90.31	81.4	64.1	46.18	79.58	68.65	66.77	36.85
Merged-chr19-37955645-3	chr19	37955148	37956148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 22 of 53)	intron (NM_001302140, intron 22 of 53)	87929.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	42.9	41.47	42.55	47.9	16.79	49.83	52.81	39.35	23.73
Merged-chr12-100168794-3	chr12	100168314	100169314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9161.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	102.97	101.83	52.72	102.56	91.9	98.06	95.06	112.75	70.57
Merged-chr10-80622515-3	chr10	80622054	80623054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-226.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	278.02	165.42	143.37	269.89	147.88	131.82	257.71	160.51	114.29
Merged-chr3-131976090-3	chr3	131975609	131976609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109183.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	5.72	1.84	3.7	6.75	4.2	1.61	8.45	2.65	2.5
Merged-chr6-124931347-3	chr6	124930864	124931864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-24.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	214.52	139.62	160.02	196.34	118.03	118.96	170.05	147.24	88.68
Merged-chr9-106477159-3	chr9	106476665	106477665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	-144.0	NM_145620	27966.0	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	54.35	41.01	40.7	60.05	44.32	55.46	55.98	52.62	45.59
Merged-chr16-33922443-3	chr16	33921959	33922959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	44579.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	275.73	273.25	179.44	273.26	250.05	217.83	253.48	367.44	157.38
Merged-chr10-67979541-3	chr10	67979039	67980039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359318)	promoter-TSS (NM_001359318)	-31.0	NM_001359318	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	8.01	5.99	5.55	4.05	6.53	7.23	7.39	2.65	2.5
Merged-chr10-67009955-3	chr10	67009434	67010434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204915, exon 9 of 9)	3' UTR (NM_001204915, exon 9 of 9)	4859.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	97.82	88.01	75.85	93.79	81.64	65.91	103.51	114.08	46.22
Merged-chr3-28109570-1	chr3	28109070	28110070	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	125399.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.15	6.91	3.7	7.42	7.93	9.65	14.79	6.63	5.0
Merged-chr5-36796814-3	chr5	36796314	36797314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-60.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	144.73	148.83	109.14	145.06	143.22	182.46	142.59	115.41	83.69
Merged-chr13-12650361-3	chr13	12649793	12650793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003568, exon 1 of 7)	non-coding (NR_003568, exon 1 of 7)	102.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	65.79	55.29	65.67	79.62	80.71	93.24	69.71	57.92	46.22
Merged-chr17-23546487-3	chr17	23545958	23546958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4341.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	53.2	52.99	37.0	47.9	23.79	55.46	21.12	23.43	25.61
Merged-chr17-63921813-3	chr17	63921306	63922306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 5 of 18)	intron (NM_001037997, intron 5 of 18)	-16166.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	22.31	30.87	20.35	33.74	30.79	35.37	26.4	30.95	23.11
Merged-chr4-41348968-3	chr4	41348486	41349486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290454)	promoter-TSS (NM_001290454)	-10.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	440.48	407.33	254.36	383.91	290.17	229.08	339.04	359.92	165.5
Merged-chr3-81036831-3	chr3	81036328	81037328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019971, exon 1 of 6)	5' UTR (NM_019971, exon 1 of 6)	412.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	160.18	117.5	128.57	201.74	185.2	178.44	188.0	181.29	88.06
Merged-chr4-21879825-3	chr4	21879323	21880323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356348)	promoter-TSS (NM_001356348)	-30.0	NM_001356348	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	63.5	84.78	58.27	92.44	106.83	103.69	89.78	75.17	56.21
Merged-chr1-157039266-3	chr1	157038779	157039779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69371.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	89.81	61.28	56.42	88.39	52.72	77.97	74.99	59.69	41.22
Merged-chr4-144904159-3	chr4	144903650	144904650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	11013.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	63.5	72.34	47.17	99.86	91.9	97.26	102.45	107.0	60.58
Merged-chr9-123924252-3	chr9	123923758	123924758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44434.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	543.45	370.01	320.03	517.51	366.68	393.86	497.46	555.8	272.29
Merged-chr17-26576996-3	chr17	26576496	26577496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	MIRc|SINE|MIR	15484.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	35.47	24.42	20.35	53.98	30.32	23.31	25.35	14.59	12.49
Merged-chr19-44293953-3	chr19	44293440	44294440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009128, exon 1 of 6)	5' UTR (NM_009128, exon 1 of 6)	264.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	41.76	30.87	37.0	55.33	44.32	57.07	83.44	74.28	26.85
Merged-chr11-119942937-3	chr11	119942446	119943446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130862)	promoter-TSS (NM_130862)	-146.0	NM_001037754	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	49.2	48.84	47.17	68.15	38.72	34.56	53.87	27.86	34.35
Merged-chr8-26744612-3	chr8	26744122	26745122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79801.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	10.3	10.6	6.47	18.22	7.46	9.65	12.67	7.96	3.75
Merged-chr11-109331537-3	chr11	109331042	109332042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15325.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	16.59	15.21	17.57	21.59	13.06	20.9	31.69	38.47	9.99
Merged-chr1-178187515-3	chr1	178187020	178188020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024282, exon 1 of 5)	5' UTR (NM_024282, exon 1 of 5)	103.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	100.68	114.27	96.2	104.58	88.64	73.95	109.84	108.33	51.21
Merged-chr1-93445565-3	chr1	93445010	93446010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133808, intron 1 of 27)	CpG	191.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	442.2	442.81	289.51	368.4	317.23	298.21	310.52	268.4	179.24
Merged-chr3-96240320-3	chr3	96239822	96240822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013549).2	promoter-TSS (NM_013549).2	12.0	NM_013549	15267.0	Mm.5220	NM_013549	ENSMUSG00000064220	Hist2h2aa1	AI448581|H2a-614|H2a-615|Hist2	histone cluster 2, H2aa1	protein-coding	40.62	58.98	31.45	56.0	64.84	61.09	41.19	57.48	41.22
Merged-chr16-45252645-1	chr16	45252145	45253145	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177584, exon 6 of 6)	3' UTR (NM_177584, exon 6 of 6)	28308.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	1.14	1.38	0.0	4.05	6.53	1.61	4.22	3.98	5.0
Merged-chr13-9129060-3	chr13	9128559	9129559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	35178.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	128.71	110.59	101.74	138.32	110.56	80.38	113.01	109.22	66.2
Merged-chr15-52712380-3	chr15	52711888	52712888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027212)	promoter-TSS (NM_027212)	-57.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	35.47	32.72	27.75	39.13	41.05	37.78	50.7	33.16	24.36
Merged-chr6-88828188-3	chr6	88827706	88828706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011844, exon 8 of 8)	3' UTR (NM_011844, exon 8 of 8)	13729.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	171.04	137.77	98.05	124.15	98.43	73.14	100.34	119.83	62.45
Merged-chr1-191849651-3	chr1	191849155	191850155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28182.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	81.8	66.35	50.87	91.09	105.43	56.27	144.7	136.63	45.59
Merged-chr10-127600394-3	chr10	127599895	127600895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	20753.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	251.13	202.75	192.39	279.33	170.28	208.98	239.75	269.28	185.48
Merged-chr6-134173532-3	chr6	134173037	134174037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	137837.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	98.97	100.91	63.82	97.16	58.78	65.91	57.03	68.54	51.84
Merged-chr5-147542464-3	chr5	147541966	147542966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	112310.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	77.23	91.24	85.1	82.32	84.9	90.83	115.12	103.47	66.82
Merged-chr17-67450304-3	chr17	67449809	67450809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95818.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	63.5	75.11	74.92	58.03	39.19	32.96	111.96	112.75	36.85
Merged-chr18-38576201-3	chr18	38575713	38576713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25055.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	28.6	18.89	21.27	23.62	17.73	13.66	15.84	7.07	9.99
Merged-chr7-46033681-3	chr7	46033159	46034159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153057)	promoter-TSS (NM_153057)	-37.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	27.46	17.97	22.2	15.52	14.0	28.94	17.96	11.05	6.25
Merged-chr2-120629021-3	chr2	120628529	120629529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19434.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	72.08	63.13	61.97	91.76	65.31	73.95	101.39	109.66	41.22
Merged-chr10-117710192-3	chr10	117709696	117710696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010786, intron 1 of 11)	CpG-1528	562.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	306.05	266.79	274.71	259.09	247.72	233.1	282.0	246.29	180.49
Merged-chr7-18910536-3	chr7	18910006	18911006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033314)	promoter-TSS (NM_001033314)	-102.0	NM_001033314	232933.0	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	14.87	29.03	18.5	18.22	13.53	28.13	23.24	22.99	9.99
Merged-chr14-70883004-3	chr14	70882491	70883491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7116.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	22.88	24.42	24.97	29.69	17.73	22.51	20.07	23.43	10.62
Merged-chr12-3904111-3	chr12	3903616	3904616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	12372.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	133.29	100.91	86.95	162.61	135.75	92.44	118.29	141.05	49.96
Merged-chr1-92082981-3	chr1	92082470	92083470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	97371.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	21.74	26.26	11.1	25.64	14.46	6.43	10.56	9.73	13.12
Merged-chr9-107633500-3	chr9	107633014	107634014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1828.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	68.07	72.8	78.62	62.75	55.51	84.4	78.16	73.4	79.94
Merged-chr5-90877063-3	chr5	90876584	90877584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-14161.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	95.53	95.38	79.55	152.49	122.23	107.71	74.99	69.86	56.21
Merged-chr5-124621617-3	chr5	124621125	124622125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 13 of 18)	L1MB5|LINE|L1	-7427.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	21.17	24.42	16.65	22.94	12.6	6.43	21.12	8.4	23.11
Merged-chr15-83009739-3	chr15	83009224	83010224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 4 of 5)	intron (NM_028728, intron 4 of 5)	13414.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	106.4	92.62	42.55	120.77	89.1	110.12	130.97	99.05	73.69
Merged-chr13-23535279-3	chr13	23534764	23535764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145073)	promoter-TSS (NM_145073)	-154.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	14.87	30.41	12.02	29.01	24.26	20.09	33.8	45.99	22.48
Merged-chr13-3893573-3	chr13	3893062	3894062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001047159)	promoter-TSS (NM_001047159)	19.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	10.87	11.98	5.55	17.54	13.06	9.65	7.39	4.86	3.12
Merged-chr7-35318383-3	chr7	35317847	35318847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026181)	promoter-TSS (NM_026181)	93.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	23.45	15.21	7.4	12.14	15.39	12.86	17.96	11.05	10.62
Merged-chr9-95857658-3	chr9	95857188	95858188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019864)	promoter-TSS (NM_019864)	91.0	NM_019864	245000.0	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	199.07	187.08	123.02	195.67	169.81	154.33	194.34	205.61	89.93
Merged-chr7-30664975-3	chr7	30664410	30665410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027999)	promoter-TSS (NM_027999)	84.0	NM_027999	71909.0	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	30.89	35.48	16.65	25.64	22.86	24.92	41.19	26.97	16.24
Merged-chr8-80272719-1	chr8	80272219	80273219	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214711.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	26.89	27.19	35.15	17.54	28.46	27.33	36.97	14.59	35.6
Merged-chr11-83544451-3	chr11	83543936	83544936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13918.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	58.35	52.07	60.12	101.21	40.12	67.52	96.11	80.47	51.84
Merged-chr5-34949436-3	chr5	34948938	34949938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-10.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	15.45	8.75	12.02	13.49	14.93	29.74	17.96	15.48	9.99
Merged-chr9-21168463-3	chr9	21167977	21168977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2763.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	332.36	301.81	219.21	279.33	236.99	237.12	246.09	388.66	183.61
Merged-chr17-32830253-3	chr17	32829720	32830720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293229)	promoter-TSS (NM_001293229)	41.0	NM_001293229	240064.0	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	93.24	91.7	54.57	47.23	59.71	36.17	81.33	92.41	50.59
Merged-chr15-98484684-3	chr15	98484195	98485195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2012.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	221.38	153.9	123.94	168.68	126.89	112.53	137.3	181.73	79.94
Merged-chr2-32499547-1	chr2	32499047	32500047	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-35812.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	22.31	27.19	20.35	45.88	21.46	28.94	34.85	22.11	16.24
Merged-chr7-114292128-3	chr7	114291627	114292627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	88.67	163.12	110.07	80.97	108.7	114.94	136.25	181.73	108.67
Merged-chr18-80702649-3	chr18	80702144	80703144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	5529.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	104.69	111.05	77.7	98.51	96.57	88.42	67.6	51.29	49.96
Merged-chr13-108158664-3	chr13	108158166	108159166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362403)	promoter-TSS (NM_001362403)	-41.0	NM_001127346	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	45.19	45.16	12.95	58.7	56.45	32.15	51.75	28.3	21.23
Merged-chr3-159840299-3	chr3	159839792	159840792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	642.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	46.34	40.09	33.3	50.6	61.58	44.21	51.75	37.14	23.73
Merged-chr4-150606011-3	chr4	150605519	150606519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	46155.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	47.48	44.24	32.37	59.38	33.59	45.01	46.47	46.43	23.11
Merged-chr8-13155509-3	chr8	13154979	13155979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3682.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	245.98	242.83	185.92	205.79	192.67	163.97	245.04	332.95	131.15
Merged-chr4-88550366-3	chr4	88549861	88550861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7884.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	37.18	26.73	7.4	25.64	33.59	6.43	38.02	24.76	9.37
Merged-chr2-119112720-3	chr2	119112200	119113200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011234)	promoter-TSS (NM_011234)	-117.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	109.26	144.23	62.9	96.48	111.5	113.33	88.72	121.15	49.96
Merged-chr10-44686207-3	chr10	44685694	44686694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-227446.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	61.21	45.62	51.8	61.4	29.86	49.83	51.75	54.83	44.34
Merged-chrX-8096979-3	chrX	8096467	8097467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003632)	promoter-TSS (NR_003632)	-120.0	NR_003632	627782.0	Mm.305432	NM_001037930	ENSMUSG00000086404	Gm6787	EG627782	proteasome (prosome, macropain) subunit, beta type 7 pseudogene	pseudo	179.62	162.66	91.57	145.74	141.35	97.26	145.75	159.62	54.96
Merged-chr4-102658740-3	chr4	102658245	102659245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68902.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	32.61	29.95	23.12	27.66	20.06	14.47	27.46	20.34	35.6
Merged-chr2-148568088-3	chr2	148567585	148568585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	-104530.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	22.31	29.03	19.42	26.31	21.46	36.97	30.63	26.09	27.48
Merged-chr9-32686061-3	chr9	32685560	32686560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9982.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	25.17	22.12	13.87	40.48	42.45	20.9	20.07	20.78	16.24
Merged-chr3-152210350-3	chr3	152209790	152210790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355372)	promoter-TSS (NM_001355372)	-132.0	NM_001355369	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	732.23	581.05	394.03	682.81	618.12	446.1	547.1	522.2	279.79
Merged-chr3-79842777-3	chr3	79842296	79843296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-134.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	205.37	252.51	107.29	215.23	269.18	127.8	250.32	303.33	109.92
Merged-chr16-85071951-3	chr16	85071452	85072452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	99741.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	151.59	158.51	129.49	124.82	115.23	78.77	104.56	137.51	83.69
Merged-chr14-20836761-3	chr14	20836279	20837279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008873, intron 1 of 10)	intron (NM_008873, intron 1 of 10)	117.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	140.73	108.75	93.42	130.22	95.63	101.28	137.3	133.09	67.45
Merged-chr10-111583311-1	chr10	111582811	111583811	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10962.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	5.72	4.61	0.92	10.12	7.93	2.41	6.34	3.1	3.75
Merged-chrX-109095397-3	chrX	109094905	109095905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019989)	promoter-TSS (NM_019989)	-2.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	58.35	55.75	54.57	81.64	57.38	74.75	73.93	82.69	43.09
Merged-chr15-98484120-3	chr15	98483604	98484604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1421.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	294.04	211.04	134.12	219.28	172.61	131.82	173.21	245.4	96.18
Merged-chr1-55808898-3	chr1	55808369	55809369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122372.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	20.59	41.93	22.2	16.87	10.26	14.47	31.69	31.39	24.98
Merged-chr11-23007767-3	chr11	23007251	23008251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5636.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	28.03	20.27	16.65	14.17	15.86	35.37	24.29	19.46	36.85
Merged-chr19-32990794-3	chr19	32990286	32991286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-166326.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	42.33	50.23	59.2	50.6	34.99	53.05	63.37	73.4	32.48
Merged-chr6-130092605-1	chr6	130092105	130093105	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013793, intron 3 of 7)	intron (NM_013793, intron 3 of 7)	-25334.0	NM_001252577	16635.0	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	17.96	17.24	17.49
Merged-chr9-71952740-3	chr9	71952233	71953233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	MIRc|SINE|MIR	-56637.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	78.37	75.11	50.87	90.41	87.7	64.3	108.79	115.41	19.98
Merged-chr2-157135233-3	chr2	157134728	157135728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018851)	promoter-TSS (NM_018851)	-6.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	120.7	138.24	101.74	105.93	81.17	137.45	146.81	178.64	106.79
Merged-chr2-23039197-3	chr2	23038710	23039710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	AT_rich|Low_complexity|Low_complexity	1031.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	220.24	294.44	202.56	251.67	226.72	202.55	252.43	301.12	171.75
Merged-chr7-27361593-3	chr7	27361081	27362081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032610, exon 33 of 36)	exon (NM_032610, exon 33 of 36)	-5573.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	21.17	12.9	14.8	19.57	12.6	13.66	33.8	11.94	8.74
Merged-chr14-52133828-3	chr14	52133326	52134326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023879, exon 10 of 25)	exon (NM_023879, exon 10 of 25)	22923.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	45.76	30.41	38.85	30.36	18.66	33.76	25.35	34.05	36.22
Merged-chr2-30929855-3	chr2	30929338	30930338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23163.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	148.16	123.03	75.85	132.24	125.96	98.87	133.08	125.13	47.46
Merged-chr3-137775222-1	chr3	137774722	137775722	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	8393.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	5.15	1.84	9.25	2.02	2.33	0.0	1.06	3.54	3.75
Merged-chr9-114752989-3	chr9	114752492	114753492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	21789.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	81.8	55.75	74.0	96.48	62.51	56.27	110.9	101.26	62.45
Merged-chr12-12320891-3	chr12	12320394	12321394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	58755.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	33.18	53.45	30.52	48.58	40.59	50.64	29.57	44.66	31.85
Merged-chr9-121297805-6	chr9	121297305	121298305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152160, exon 1 of 18)	non-coding (NR_152160, exon 1 of 18)	303.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	376.98	301.81	256.21	325.21	273.37	193.71	353.82	332.07	171.75
Merged-chr15-59049020-3	chr15	59048524	59049524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	33002.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	25.74	25.34	1.85	43.18	27.06	36.17	30.63	34.05	22.48
Merged-chr5-74641231-1	chr5	74640731	74641731	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159577, intron 2 of 10)	intron (NM_001159577, intron 2 of 10)	36641.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.0	1.84	3.7	7.42	2.8	0.0	4.22	2.21	5.0
Merged-chr5-41707730-3	chr5	41707206	41708206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310592)	promoter-TSS (NM_001310592)	-15.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	231.11	191.69	88.8	190.27	139.02	111.73	162.65	131.77	125.53
Merged-chr19-56720453-3	chr19	56719956	56720956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1916.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	153.31	102.29	61.97	152.49	86.77	49.83	108.79	101.7	38.72
Merged-chr13-70638167-3	chr13	70637690	70638690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-556.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	114.98	93.54	98.05	129.55	83.51	110.12	115.12	101.7	48.09
Merged-chr2-156720933-3	chr2	156720439	156721439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040505)	promoter-TSS (NR_040505)	-26.0	NM_001042488	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	367.26	246.98	218.29	322.51	205.73	196.12	294.68	241.42	126.15
Merged-chr4-155066984-3	chr4	155066479	155067479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-51.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	197.36	221.18	155.39	178.8	162.34	153.52	259.82	213.57	88.06
Merged-chr3-33800102-3	chr3	33799569	33800569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025978)	promoter-TSS (NM_025978)	-114.0	NM_027619	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	295.18	274.17	258.99	299.57	277.57	256.41	294.68	249.38	169.87
Merged-chr19-6340806-1	chr19	6340306	6341306	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-354.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	120.7	108.28	101.74	90.41	73.24	112.53	109.84	143.26	64.33
Merged-chr3-105704700-3	chr3	105704208	105705208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	109.0	NM_175398	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	9.15	4.61	1.85	6.75	3.73	8.04	5.28	4.86	3.75
Merged-chr1-171006555-3	chr1	171006062	171007062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12364.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	128.14	93.08	65.67	105.26	66.24	79.58	118.29	112.31	81.19
Merged-chr16-17451952-3	chr16	17451460	17452460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277231)	promoter-TSS (NM_001277231)	-25.0	NM_001277231	12929.0	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	107.55	142.84	112.84	101.21	126.89	127.8	132.02	137.07	57.46
Merged-chr15-60823316-3	chr15	60822804	60823804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	339.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	24.03	23.5	14.8	51.28	35.92	21.7	23.24	18.13	5.0
Merged-chr12-108334167-3	chr12	108333656	108334656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-160.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	41.19	34.56	48.1	15.52	20.99	17.68	9.51	10.61	3.12
Merged-chr1-79776095-3	chr1	79775598	79776598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	34.32	33.18	35.15	30.36	41.52	32.96	54.92	49.52	37.47
Merged-chr18-36734063-1	chr18	36733563	36734563	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-1007.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	80.09	79.72	110.99	64.77	46.18	76.36	83.44	104.79	112.42
Merged-chr18-53247157-3	chr18	53246652	53247652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	1490.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	291.18	239.61	135.97	297.55	164.21	205.77	252.43	271.93	149.26
Merged-chr12-25178012-3	chr12	25177515	25178515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48841.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.0	9.22	11.1	10.12	6.06	10.45	7.39	8.4	6.25
Merged-chr19-42639759-3	chr19	42639249	42640249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26943.0	NM_053083	67573.0	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	9.15	6.91	3.7	6.75	3.27	8.04	5.28	5.75	5.0
Merged-chr7-19335835-3	chr7	19335352	19336352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-9219.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	16.59	6.45	9.25	6.75	5.6	6.43	32.74	20.78	14.99
Merged-chr11-93955912-3	chr11	93955378	93956378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077529)	promoter-TSS (NM_001077529)	-95.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	80.66	76.03	81.4	157.21	144.15	203.36	153.15	148.13	104.92
Merged-chr11-55013062-3	chr11	55012541	55013541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 3 of 24)	intron (NR_138556, intron 3 of 24)	20430.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	50.34	43.31	21.27	41.16	29.39	17.68	29.57	18.57	17.49
Merged-chr19-55218618-3	chr19	55218064	55219064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	22672.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	41.19	29.03	29.6	62.07	41.05	56.27	80.27	57.48	46.84
Merged-chr11-70525278-3	chr11	70524780	70525780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008946)	promoter-TSS (NM_008946)	-77.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	147.02	83.86	50.87	103.91	69.98	57.07	87.66	70.75	34.97
Merged-chr2-181273989-3	chr2	181273493	181274493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	13973.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	63.5	50.69	41.62	136.29	87.24	127.0	120.41	137.07	86.81
Merged-chr15-25896967-3	chr15	25896470	25897470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-36582.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	12.01	10.14	5.55	19.57	16.33	6.43	24.29	8.84	6.25
Merged-chr11-23255768-3	chr11	23255258	23256258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134014)	promoter-TSS (NM_134014)	-283.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	251.13	182.93	184.07	217.93	212.26	173.62	214.41	238.33	128.65
Merged-chr1-88576400-3	chr1	88575936	88576936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24919.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	160.18	132.25	137.82	101.21	56.45	81.99	94.0	91.09	54.96
Merged-chr14-101608779-3	chr14	101608308	101609308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081278, exon 1 of 19)	5' UTR (NM_001081278, exon 1 of 19)	383.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	16.59	16.13	12.95	20.24	20.06	18.49	32.74	19.46	12.49
Merged-chr10-94090238-1	chr10	94089738	94090738	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	54237.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	10.87	16.13	10.17	5.4	6.53	7.23	41.19	40.68	31.85
Merged-chr4-129513604-3	chr4	129513109	129514109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010807)	promoter-TSS (NM_010807)	28.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	146.45	78.79	110.07	107.28	50.38	123.78	108.79	73.4	74.94
Merged-chr4-132611559-3	chr4	132611060	132612060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27486.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	65.21	27.19	14.8	75.57	30.32	22.51	55.98	34.93	16.24
Merged-chr13-18781443-3	chr13	18780970	18781970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	64178.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	61.21	86.17	42.55	79.62	86.3	98.87	74.99	84.01	56.83
Merged-chr2-120158304-3	chr2	120157802	120158802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-3727.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	84.09	69.12	37.0	97.83	63.91	57.07	59.15	88.88	51.84
Merged-chr12-84417294-3	chr12	84416786	84417786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025525)	promoter-TSS (NM_025525)	86.0	NM_025525	66381.0	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	138.44	117.04	49.95	122.12	148.82	106.9	121.46	103.02	32.48
Merged-chr1-62720349-3	chr1	62719805	62720805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16988.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	147.02	147.45	78.62	74.89	71.38	56.27	36.97	34.49	36.85
Merged-chr14-76081668-3	chr14	76081181	76082181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41|LTR|ERV1	29134.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	34.9	38.71	42.55	47.23	38.72	45.82	83.44	84.45	39.35
Merged-chr11-55453822-3	chr11	55453349	55454349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	7359.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	225.96	170.95	122.09	191.62	140.42	129.41	153.15	154.76	93.05
Merged-chr13-99323849-3	chr13	99323362	99324362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 8 of 9)	intron (NM_026873, intron 8 of 9)	20816.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	73.22	52.99	22.2	95.81	69.04	54.66	89.78	93.74	34.35
Merged-chr8-106149177-3	chr8	106148666	106149666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1188.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	196.79	194.45	164.64	232.1	191.73	203.36	242.92	340.47	143.02
Merged-chr12-91384493-3	chr12	91383996	91384996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181815)	promoter-TSS (NM_181815)	-87.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	43.48	47.46	17.57	85.69	70.91	31.35	87.66	79.15	19.98
Merged-chr10-94199031-3	chr10	94198546	94199546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	37.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	156.17	199.52	130.42	189.6	171.21	147.09	139.42	163.16	78.69
Merged-chr14-52279493-3	chr14	52278974	52279974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-79.0	NM_172601	76338.0	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	208.23	195.83	197.02	196.34	160.48	197.73	202.79	151.22	124.28
Merged-chr12-91676124-3	chr12	91675625	91676625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-85638.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	18.31	8.75	8.32	13.49	8.4	1.61	10.56	7.52	6.25
Merged-chr12-73686967-3	chr12	73686465	73687465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	102169.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	164.75	195.83	90.65	232.78	229.99	150.31	230.25	283.43	82.44
Merged-chr1-180848281-3	chr1	180847789	180848789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2862.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	368.97	325.31	212.74	375.82	344.28	237.12	346.43	380.26	159.88
Merged-chr1-80614845-3	chr1	80614341	80615341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	50511.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	54.92	45.62	30.52	54.65	33.12	50.64	60.2	34.93	48.09
Merged-chr11-84129575-3	chr11	84129046	84130046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172562)	promoter-TSS (NM_172562)	22.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	67.5	41.93	18.5	69.5	34.52	33.76	58.09	26.09	8.74
Merged-chr12-71864043-3	chr12	71863554	71864554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-25489.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	17.73	20.74	12.95	29.69	34.52	20.09	28.52	28.3	18.11
Merged-chr12-91668743-3	chr12	91668259	91669259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-78272.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	69.22	36.4	15.72	71.52	34.06	20.9	20.07	16.8	8.74
Merged-chr14-27429535-3	chr14	27429028	27430028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028945, intron 1 of 23)	CpG	694.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	114.41	147.45	153.54	146.41	162.81	190.5	162.65	144.15	139.89
Merged-chr7-102019477-3	chr7	102018986	102019986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360748, exon 9 of 9)	3' UTR (NM_001360748, exon 9 of 9)	-1331.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	169.9	152.98	172.04	185.55	177.27	198.54	149.98	191.46	135.52
Merged-chr6-53370134-3	chr6	53369622	53370622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 2 of 10)	intron (NM_001327821, intron 2 of 10)	82819.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	25.17	33.18	22.2	52.63	34.99	44.21	36.97	48.2	19.98
Merged-chr15-78174281-3	chr15	78173761	78174761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025931)	promoter-TSS (NM_025931)	-153.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	37.18	47.92	51.8	35.09	26.59	52.25	35.91	41.12	29.35
Merged-chr2-104110290-3	chr2	104109800	104110800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	-12469.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	18.31	15.67	21.27	28.34	13.06	27.33	14.79	6.19	10.62
Merged-chr13-9150158-3	chr13	9149663	9150663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 9 of 17)	intron (NM_172585, intron 9 of 17)	56282.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	148.16	151.6	61.05	136.97	104.5	64.3	81.33	94.18	28.73
Merged-chr18-73542192-3	chr18	73541689	73542689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30516.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	164.75	157.59	86.95	222.66	197.8	193.71	171.1	190.13	96.18
Merged-chr9-70834820-3	chr9	70834329	70835329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	99979.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	121.28	83.4	87.87	125.5	81.17	120.57	143.64	115.85	89.31
Merged-chr15-81084062-3	chr15	81083568	81084568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	20979.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	320.35	271.4	130.42	337.36	257.05	218.63	220.74	238.77	111.79
Merged-chr9-65524151-3	chr9	65523636	65524636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55951.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	24.6	21.2	12.95	33.06	16.79	30.54	30.63	22.11	14.36
Merged-chr18-8376843-3	chr18	8376313	8377313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	507100.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	9.72	9.22	11.1	13.49	10.73	14.47	7.39	4.42	11.24
Merged-chr14-47374555-3	chr14	47374076	47375076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	716.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	392.43	378.76	283.04	485.12	369.01	333.57	430.92	556.25	224.21
Merged-chr12-91748394-3	chr12	91747889	91748889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	38047.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	109.26	73.73	48.1	219.96	146.02	148.7	123.57	158.74	94.93
Merged-chr18-39802263-3	chr18	39801751	39802751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28754.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	128.71	129.94	110.07	143.04	91.9	123.78	172.16	186.15	64.95
Merged-chr8-84420706-2	chr8	84420206	84421206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	L1ME1|LINE|L1	5342.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	167.04	140.08	107.29	179.47	141.82	167.19	2.11	1.33	3.12
Merged-chr7-30094937-5	chr7	30094428	30095428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011981)	promoter-TSS (NM_011981)	-148.0	NM_011981	26466.0	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	38.9	64.05	66.6	48.58	46.18	76.36	64.43	38.47	37.47
Merged-chr7-75656655-3	chr7	75656136	75657136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-191702.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	233.4	246.06	80.47	205.79	171.21	124.59	118.29	107.45	61.2
Merged-chr5-16434798-3	chr5	16434297	16435297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-118698.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	17.16	5.99	13.87	6.07	4.2	8.04	2.11	2.21	8.12
Merged-chr10-93688480-3	chr10	93687990	93688990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5168.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	95.53	117.5	35.15	101.21	131.09	65.11	43.3	56.16	41.22
Merged-chrX-96130896-3	chrX	96130392	96131392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	34847.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	121.85	110.13	65.67	114.03	64.38	65.91	108.79	123.81	69.32
Merged-chr19-56721238-3	chr19	56720752	56721752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1120.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	368.97	311.03	199.79	331.29	285.97	225.06	264.05	323.22	161.13
Merged-chr12-76615033-3	chr12	76614513	76615513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	ORR1D2|LTR|ERVL-MaLR	-67088.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	129.86	120.73	97.12	94.46	58.78	81.18	84.49	115.85	83.69
Merged-chr12-87266339-3	chr12	87265833	87266833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142580)	promoter-TSS (NM_001142580)	-47.0	NM_001142581	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	163.61	197.22	196.09	143.71	145.08	151.11	174.27	187.92	74.32
Merged-chr7-90023194-3	chr7	90022699	90023699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5960.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	106.97	107.36	63.82	95.14	73.24	81.18	107.73	100.37	68.7
Merged-chr7-99380995-3	chr7	99380490	99381490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-528.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	167.04	175.1	189.62	205.11	168.41	207.38	210.18	245.4	148.01
Merged-chr10-59887536-3	chr10	59887001	59888001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	ID4|SINE|ID	7910.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	126.42	132.25	82.32	114.03	89.57	78.77	107.73	92.86	98.68
Merged-chr19-10843101-1	chr19	10842601	10843601	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023044, exon 1 of 8)	exon (NM_023044, exon 1 of 8)	557.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	398.72	287.99	264.54	419.67	289.24	269.27	433.04	367.88	231.08
Merged-chr17-27173874-3	chr17	27173379	27174379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6115.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	14.87	10.6	13.87	9.45	13.06	20.9	20.07	7.52	14.99
Merged-chr14-79301590-3	chr14	79301099	79302099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025427)	promoter-TSS (NM_025427)	36.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	6.29	0.46	5.55	7.42	0.93	3.22	2.11	0.0	1.25
Merged-chr7-118855762-3	chr7	118855239	118856239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168220)	promoter-TSS (NM_001168220)	-36.0	NM_001081446	434232.0	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	46.91	54.37	74.92	53.3	53.65	54.66	64.43	30.07	23.73
Merged-chr11-115512891-3	chr11	115512393	115513393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1500.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	85.81	74.65	57.35	88.39	48.52	73.95	78.16	105.68	59.33
Merged-chr16-36530823-3	chr16	36530322	36531322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	31312.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	34.32	26.73	34.22	56.0	29.86	23.31	34.85	22.55	17.49
Merged-chr10-12868295-3	chr10	12867816	12868816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6581.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	71.51	54.37	40.7	79.62	48.98	19.29	92.94	98.16	27.48
Merged-chr17-45555611-3	chr17	45555110	45556110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304956)	promoter-TSS (NM_001304956)	-90.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	169.9	143.76	116.54	144.39	101.7	111.73	108.79	139.72	83.06
Merged-chr2-91483654-3	chr2	91483147	91484147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 16 of 37)	B3|SINE|B2	26116.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	108.12	95.84	69.37	105.93	76.97	61.09	87.66	99.93	40.59
Merged-chr9-59731308-3	chr9	59730820	59731820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19329.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	256.85	251.13	147.99	279.33	207.6	225.86	237.64	298.46	145.51
Merged-chr1-156680913-3	chr1	156680412	156681412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145413, exon 8 of 8)	3' UTR (NM_145413, exon 8 of 8)	-6573.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	165.32	157.13	86.95	170.03	97.5	125.39	59.15	44.66	25.61
Merged-chr1-170162021-2	chr1	170161521	170162521	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 2 of 10)	intron (NM_133806, intron 2 of 10)	12943.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	12.59	13.36	21.27	61.4	48.98	69.13	57.03	76.49	59.33
Merged-chr12-21336029-3	chr12	21335537	21336537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	19645.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	56.06	60.36	50.87	60.05	41.99	73.95	44.36	25.2	14.36
Merged-chr14-32281779-3	chr14	32281264	32282264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011960, intron 15 of 17)	intron (NM_011960, intron 15 of 17)	-40255.0	NM_001081130	239017.0	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	13.73	28.57	18.5	16.87	21.93	12.86	17.96	20.78	16.24
Merged-chr4-130800280-3	chr4	130799778	130800778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7741.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	367.26	265.41	195.17	355.58	209.93	229.88	303.13	324.55	156.13
Merged-chr2-174327638-5	chr2	174327133	174328133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310083)	promoter-TSS (NM_001310083)	-135.0	NM_001310083	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	101.83	76.03	92.5	87.71	53.65	65.11	98.23	95.95	75.57
Merged-chr14-31001569-3	chr14	31001084	31002084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026911)	promoter-TSS (NM_026911)	82.0	NM_026911	69019.0	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	111.55	91.7	84.17	110.65	97.97	92.44	72.88	91.97	45.59
Merged-chr4-123921309-3	chr4	123920823	123921823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	3890.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	112.12	138.7	63.82	128.87	119.89	95.65	104.56	180.4	84.31
Merged-chr3-90081620-4	chr3	90081135	90082135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	2114.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	119.56	125.79	104.52	94.46	57.38	75.56	85.55	134.42	78.07
Merged-chr11-50210291-3	chr11	50209802	50210802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290769, intron 1 of 7)	CpG	518.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	371.26	282.92	206.26	336.01	270.11	213.0	231.3	236.12	160.5
Merged-chr1-151428531-3	chr1	151428015	151429015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025819)	promoter-TSS (NM_025819)	-27.0	NM_026876	98685.0	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	204.22	237.76	145.22	192.97	192.2	156.74	172.16	182.17	99.3
Merged-chr15-100084163-3	chr15	100083648	100084648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	45484.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	309.48	240.53	163.72	269.89	200.6	168.8	260.88	289.18	141.77
Merged-chr11-29173514-3	chr11	29172987	29173987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134034, intron 1 of 15)	CpG	580.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	230.54	210.58	174.82	213.89	204.8	163.97	205.96	221.97	172.99
Merged-chr19-32179752-3	chr19	32179250	32180250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	31263.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	46.34	24.88	8.32	47.23	37.32	16.08	7.39	13.27	6.25
Merged-chr5-112280340-3	chr5	112279824	112280824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	MIR3|SINE|MIR	3633.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	167.04	193.53	145.22	174.75	151.15	155.13	139.42	151.22	96.8
Merged-chr18-66478329-3	chr18	66477839	66478839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19735.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	104.69	140.08	75.85	132.92	99.37	127.8	157.37	154.32	90.56
Merged-chr7-83722654-3	chr7	83722143	83723143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360087, exon 2 of 19)	exon (NM_001360087, exon 2 of 19)	9755.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	21.74	23.96	25.9	21.59	12.13	15.27	33.8	35.82	23.11
Merged-chr2-71344098-3	chr2	71343610	71344610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 2 of 17)	intron (NM_172436, intron 2 of 17)	23444.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	29.17	24.42	20.35	38.46	36.39	19.29	51.75	31.84	31.85
Merged-chr5-129584039-3	chr5	129583537	129584537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011846)	promoter-TSS (NM_011846)	-132.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	6.86	5.99	3.7	18.22	9.8	3.22	6.34	1.77	9.99
Merged-chr4-88794471-2	chr4	88793963	88794963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161609).6	promoter-TSS (NM_001161609).6	-24.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	6.86	0.92	0.0	0.0	0.0	0.0	8.45	5.75	0.0
Merged-chr10-19009562-3	chr10	19009053	19010053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	2410.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	151.02	114.27	57.35	103.91	69.98	60.28	108.79	111.43	44.97
Merged-chr10-118866637-3	chr10	118866113	118867113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2290.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	197.93	158.97	110.99	167.33	132.49	76.36	160.54	180.4	86.18
Merged-chr11-119709436-3	chr11	119708930	119709930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	106525.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	34.32	40.55	33.3	41.16	36.39	24.92	43.3	30.07	25.61
Merged-chrX-38189762-3	chrX	38189240	38190240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079513)	promoter-TSS (NM_001079513)	-53.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	124.71	138.7	98.05	99.86	143.22	94.04	92.94	118.5	75.57
Merged-chr10-80742385-3	chr10	80741876	80742876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007460)	promoter-TSS (NM_007460)	-101.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	209.37	199.52	184.07	196.34	160.95	151.11	142.59	149.89	123.03
Merged-chr11-32455225-5	chr11	32454743	32455743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361561)	promoter-TSS (NM_001361561)	-127.0	NM_001361561	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	110.41	61.28	65.67	101.88	52.25	74.75	123.57	47.31	34.35
Merged-chr3-58692320-3	chr3	58691788	58692788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045167)	promoter-TSS (NR_045167)	100.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	359.82	235.0	251.59	312.39	228.59	214.61	288.34	193.67	162.38
Merged-chr12-83689113-3	chr12	83688607	83689607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008943, intron 1 of 11)	intron (NM_008943, intron 1 of 11)	544.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	290.03	274.63	156.32	299.57	308.83	221.85	318.97	414.75	169.25
Merged-chr13-3406834-3	chr13	3406339	3407339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71464.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	9.72	5.53	4.62	1.35	4.2	4.02	5.28	1.77	2.5
Merged-chr1-105790516-4	chr1	105790006	105791006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	9783.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	97.82	62.67	82.32	96.48	46.65	86.81	121.46	83.13	81.19
Merged-chr2-142611336-3	chr2	142610841	142611841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	290123.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	29.17	10.6	24.05	20.24	9.33	24.92	25.35	13.27	16.24
Merged-chr5-135078304-3	chr5	135077818	135078818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199677)	promoter-TSS (NM_001199677)	-52.0	NM_001199677	194309.0	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	14.3	3.23	3.7	9.45	4.2	8.84	11.62	3.54	1.87
Merged-chr19-60811623-3	chr19	60811142	60812142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347464)	promoter-TSS (NM_001347464)	87.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	109.26	117.96	102.67	208.49	201.07	155.93	106.67	104.79	71.82
Merged-chr2-38286096-3	chr2	38285611	38286611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	1273.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	72.08	96.76	91.57	128.2	156.75	134.23	114.07	142.82	45.59
Merged-chr13-105291990-3	chr13	105291487	105292487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	1027.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	112.69	114.74	96.2	88.39	72.31	87.61	86.61	87.11	64.95
Merged-chr2-126934248-3	chr2	126933722	126934722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	-987.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	110.98	140.08	110.99	113.35	91.9	95.65	106.67	130.88	75.57
Merged-chr5-92279939-3	chr5	92279442	92280442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1761.0	NM_025972	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	35.47	46.54	24.97	16.19	16.79	20.09	17.96	34.49	31.85
Merged-chr11-75170505-3	chr11	75170012	75171012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010430)	promoter-TSS (NM_010430)	-257.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	66.93	36.86	27.75	49.93	25.66	25.72	79.21	72.52	58.71
Merged-chr11-78826558-3	chr11	78826057	78827057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001076681)	promoter-TSS (NM_001076681)	-38.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	45.76	28.11	21.27	48.58	37.79	57.87	39.08	47.75	30.6
Merged-chr13-44731243-3	chr13	44730741	44731741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	-30.0	NM_001360281	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	177.34	182.47	141.52	183.52	132.95	157.54	193.28	216.22	110.54
Merged-chr10-121365444-1	chr10	121364944	121365944	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	CpG	354.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	564.62	526.22	383.86	572.84	625.12	471.82	495.35	576.14	313.51
Merged-chr18-65693743-3	chr18	65693243	65694243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4525.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	189.35	205.51	127.64	244.92	219.73	123.78	192.23	230.81	109.29
Merged-chr18-49850525-3	chr18	49850025	49851025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 5 of 42)	intron (NM_001081371, intron 5 of 42)	17528.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	71.51	55.29	30.52	77.59	52.25	55.46	55.98	49.96	41.84
Merged-chr11-120378779-3	chr11	120378286	120379286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027980)	promoter-TSS (NM_027980)	-40.0	NM_027980	71885.0	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	20.59	17.05	25.9	30.36	8.86	19.29	13.73	11.05	16.86
Merged-chr4-43578664-3	chr4	43578176	43579176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172866)	promoter-TSS (NM_172866)	-59.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	32.61	35.48	71.22	44.53	33.12	69.93	40.14	38.03	41.22
Merged-chr14-63543886-3	chr14	63543374	63544374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177594)	promoter-TSS (NM_177594)	79.0	NM_177594	210376.0	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	53.2	71.42	70.3	53.98	65.31	83.59	91.89	68.09	48.09
Merged-chr1-165737657-3	chr1	165737172	165738172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26086.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	113.27	103.68	78.62	137.64	101.7	100.47	111.96	119.39	78.69
Merged-chr6-81958234-2	chr6	81957736	81958736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177884, exon 17 of 17)	3' UTR (NM_177884, exon 17 of 17)	7713.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	16.59	12.9	12.02	19.57	17.26	16.88	0.0	1.33	0.0
Merged-chr5-9104121-3	chr5	9103632	9104632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	3395.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	47.48	63.59	37.0	51.95	30.79	24.92	52.81	48.2	39.35
Merged-chr4-101155718-3	chr4	101155219	101156219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86681.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	64.64	65.89	30.52	106.61	102.63	90.83	52.81	55.71	31.23
Merged-chr1-107489840-3	chr1	107489342	107490342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-21581.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	26.31	26.73	31.45	21.59	22.86	20.9	24.29	38.91	32.48
Merged-chr15-99342815-3	chr15	99342331	99343331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	27651.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	41.76	29.03	14.8	33.74	18.19	20.9	30.63	16.36	22.48
Merged-chr13-63815311-3	chr13	63814826	63815826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023507)	promoter-TSS (NM_023507)	86.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	348.38	346.97	276.56	217.93	229.99	195.32	376.0	325.88	171.12
Merged-chr1-36556748-3	chr1	36556239	36557239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	818.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	213.38	190.3	215.51	128.2	129.22	199.34	174.27	168.02	129.9
Merged-chr4-147868646-3	chr4	147868144	147869144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010244)	promoter-TSS (NM_010244)	75.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	45.76	52.99	55.5	37.78	53.65	69.93	60.2	70.3	37.47
Merged-chr5-139479270-3	chr5	139478787	139479787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133349, intron 3 of 6)	intron (NM_133349, intron 3 of 6)	5204.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	36.04	17.51	9.25	44.53	27.06	23.31	27.46	11.05	8.12
Merged-chr13-113591529-3	chr13	113591022	113592022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_130796)	TTS (NM_130796)	27042.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	266.58	227.17	136.89	302.27	243.98	220.24	236.59	283.87	143.02
Merged-chr8-119432429-3	chr8	119431943	119432943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4719.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	80.09	72.8	45.32	92.44	55.98	60.28	63.37	63.67	16.24
Merged-chr14-104522327-1	chr14	104521827	104522827	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026047, intron 1 of 5)	CpG	339.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	54.92	26.73	35.15	58.03	36.85	32.15	61.26	37.14	23.11
Merged-chr19-8888799-3	chr19	8888296	8889296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025463)	promoter-TSS (NM_025463)	-22.0	NR_039598	100628605.0		NR_039598	ENSMUSG00000093314	Mir5136	mmu-mir-5136|mu-mir-5136	microRNA 5136	ncRNA	171.62	206.89	123.02	171.38	147.88	147.09	179.55	184.83	113.04
Merged-chr2-75685601-3	chr2	75685098	75686098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	19065.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	148.16	146.07	73.07	113.35	84.44	80.38	79.21	101.26	51.21
Merged-chr4-156203144-3	chr4	156202643	156203643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-141.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	470.8	436.82	254.36	500.64	514.09	266.86	374.95	449.68	173.62
Merged-chr7-19094654-3	chr7	19094162	19095162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190491)	TTS (NM_001190491)	118.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	101.25	95.84	97.12	73.54	61.11	68.32	98.23	83.13	71.2
Merged-chr6-142345743-3	chr6	142345150	142346150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183165)	promoter-TSS (NM_183165)	-47.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	76.08	74.19	84.17	99.18	90.5	73.14	95.06	90.2	49.34
Merged-chr8-105758660-3	chr8	105758167	105759167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027469)	promoter-TSS (NM_027469)	-60.0	NM_027469	70575.0	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	10.3	6.45	1.85	10.8	9.33	4.82	15.84	7.52	6.25
Merged-chr9-35050767-1	chr9	35050267	35051267	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-65961.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	204.8	246.52	160.94	257.74	208.53	221.85	217.57	286.08	138.65
Merged-chr19-7040111-3	chr19	7039608	7040608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016737)	promoter-TSS (NM_016737)	-82.0	NM_016737	20867.0	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	157.89	95.84	114.69	165.98	125.49	102.88	132.02	112.75	90.56
Merged-chr18-74778966-4	chr18	74778480	74779480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-232.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	73.22	68.2	85.1	102.56	76.97	126.19	101.39	82.24	56.21
Merged-chr17-17837976-1	chr17	17837476	17838476	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162909, intron 6 of 8)	intron (NM_001162909, intron 6 of 8)	7001.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	227.11	176.94	94.35	240.2	171.68	118.16	121.46	119.83	80.56
Merged-chr9-96670001-3	chr9	96669504	96670504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38501.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	8.01	7.37	11.1	8.1	8.4	3.22	9.51	5.31	3.75
Merged-chr5-121385670-3	chr5	121385191	121386191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163470)	promoter-TSS (NM_001163470)	-76.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	362.68	232.7	149.84	318.47	174.01	152.72	268.27	248.5	152.38
Merged-chr10-7667539-3	chr10	7667059	7668059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145706)	promoter-TSS (NM_145706)	55.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	20.02	28.11	30.52	18.89	23.79	27.33	19.01	15.92	12.49
Merged-chr2-127336074-3	chr2	127335624	127336624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010090)	promoter-TSS (NM_010090)	-35.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	220.81	173.25	151.69	192.97	123.62	120.57	183.78	198.09	105.55
Merged-chr3-109267176-3	chr3	109266675	109267675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	12.59	28.11	25.9	26.99	29.86	30.54	24.29	12.82	11.87
Merged-chr2-3475044-3	chr2	3474545	3475545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-59.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	184.77	158.97	126.72	164.63	173.54	143.88	190.11	186.15	106.17
Merged-chr3-136326056-3	chr3	136325541	136326541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310749)	promoter-TSS (NM_001310749)	25.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	72.65	75.57	60.12	72.19	49.92	61.89	87.66	63.23	72.45
Merged-chr4-126468710-3	chr4	126468196	126469196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317173)	promoter-TSS (NM_001317173)	-113.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	43.48	34.1	37.92	39.81	24.72	45.01	45.42	40.24	26.85
Merged-chr13-17695032-3	chr13	17694543	17695543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138654)	promoter-TSS (NM_138654)	-278.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	208.23	217.95	184.07	206.46	175.87	148.7	241.87	238.33	168.62
Merged-chr10-25285235-3	chr10	25284721	25285721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	13942.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	258.0	245.14	122.09	283.38	268.71	208.18	230.25	316.15	113.66
Merged-chr2-132599290-3	chr2	132598766	132599766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	1070.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	228.82	147.91	104.52	250.32	165.61	163.97	136.25	115.41	91.81
Merged-chr19-29239716-3	chr19	29239224	29240224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	-12079.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	12.59	10.14	14.8	8.1	9.33	3.22	10.56	11.94	0.62
Merged-chr13-23729194-3	chr13	23728712	23729712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	212.23	205.97	156.32	191.62	125.49	202.55	164.76	181.29	136.15
Merged-chr6-127472251-3	chr6	127471747	127472747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181402, intron 4 of 8)	intron (NM_181402, intron 4 of 8)	18620.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	24.6	28.57	30.52	25.64	23.79	21.7	41.19	28.74	8.12
Merged-chr15-72971993-3	chr15	72971491	72972491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 8 of 21)	ORR1D2|LTR|ERVL-MaLR	83821.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	26.31	14.28	17.57	20.92	12.13	44.21	17.96	20.34	13.74
Merged-chr11-55097866-3	chr11	55097331	55098331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010299)	promoter-TSS (NM_010299)	-154.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	73.22	56.68	64.75	55.33	46.65	56.27	77.1	68.09	46.84
Merged-chr5-149051966-4	chr5	149051454	149052454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	-338.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	143.01	109.21	144.29	172.05	103.56	145.49	147.87	84.45	93.05
Merged-chr11-78535495-3	chr11	78534984	78535984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018854)	promoter-TSS (NM_018854)	776.0	NM_001159392	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	206.51	215.65	198.87	201.07	181.01	208.18	192.23	311.73	144.89
Merged-chr11-11462045-3	chr11	11461533	11462533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001185153, intron 1 of 7)	CpG	386.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	155.03	106.44	126.72	136.29	89.57	98.06	152.09	97.72	70.57
Merged-chr2-124751999-3	chr2	124751493	124752493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98412.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	82.38	61.28	64.75	74.89	28.92	110.12	74.99	48.64	62.45
Merged-chr3-59262933-3	chr3	59262437	59263437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	48.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	177.91	305.96	138.74	172.73	205.26	119.76	176.38	231.25	97.43
Merged-chr10-21947134-3	chr10	21946625	21947625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-31547.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	164.18	158.05	92.5	230.75	160.48	135.04	152.09	174.66	123.66
Merged-chr5-31727666-3	chr5	31727166	31728166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181281, intron 2 of 10)	intron (NM_181281, intron 2 of 10)	29616.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	51.48	53.45	30.52	60.05	43.85	52.25	40.14	61.9	28.73
Merged-chr17-28801672-3	chr17	28801175	28802175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081315, intron 1 of 12)	CpG	549.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	109.83	47.46	76.77	84.34	48.98	61.89	111.96	41.12	52.46
Merged-chr13-92899801-1	chr13	92899301	92900301	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	55014.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	2.29	1.38	3.7	4.05	1.87	5.63	36.97	21.67	18.11
Merged-chr19-17345063-3	chr19	17344539	17345539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-5534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	56.06	37.78	22.2	50.6	39.19	22.51	36.97	34.93	41.22
Merged-chr8-115707935-3	chr8	115707452	115708452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1058.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	144.16	183.85	115.62	122.8	117.56	110.12	193.28	198.98	131.78
Merged-chr18-75245087-2	chr18	75244590	75245590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	ORR1F|LTR|ERVL-MaLR	52227.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	21.17	18.43	2.77	29.69	14.46	20.9	8.45	8.84	2.5
Merged-chr4-58912721-3	chr4	58912202	58913202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	47.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	136.15	181.09	174.82	191.62	190.8	204.97	145.75	132.65	89.93
Merged-chr2-32727578-3	chr2	32727098	32728098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252547)	promoter-TSS (NM_001252547)	-91.0	NM_001252547	27387.0	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	12.59	7.83	9.25	8.1	7.0	7.23	8.45	8.84	9.99
Merged-chr11-86358362-3	chr11	86357857	86358857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	-832.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	284.31	353.88	270.09	239.52	315.83	260.43	249.26	285.2	208.59
Merged-chr8-26961888-3	chr8	26961375	26962375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15461.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	49.2	38.71	20.35	60.05	49.45	62.7	33.8	24.32	22.48
Merged-chr17-3081847-3	chr17	3081326	3082326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	2357.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	56.06	87.55	99.89	87.71	119.89	236.31	9.51	3.98	153.01
Merged-chr7-19501136-3	chr7	19500636	19501636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	7195.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	115.55	118.42	96.2	107.95	118.49	112.53	127.8	169.79	88.68
Merged-chr2-160214298-2	chr2	160213804	160214804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113190.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	133.29	96.3	72.15	154.51	97.97	115.75	139.42	134.86	68.07
Merged-chr16-20535384-3	chr16	20534882	20535882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009679)	promoter-TSS (NM_009679)	-98.0	NM_001302970	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	102.4	89.39	86.95	78.94	85.37	120.57	122.52	110.1	67.45
Merged-chr8-120572800-3	chr8	120572296	120573296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198671, exon 11 of 16)	exon (NM_198671, exon 11 of 16)	16279.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	18.31	16.13	14.8	21.59	16.79	32.96	14.79	12.38	8.12
Merged-chr3-121693201-1	chr3	121692701	121693701	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22438.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	28.6	28.11	18.5	54.65	23.33	43.4	54.92	46.43	30.6
Merged-chr10-79539083-3	chr10	79538592	79539592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5305.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	24.03	23.5	23.12	21.59	15.39	9.65	17.96	15.48	14.36
Merged-chr4-44072650-3	chr4	44072154	44073154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190414)	promoter-TSS (NM_001190414)	63.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	66.93	46.54	32.37	107.95	89.57	42.6	83.44	48.64	21.86
Merged-chr2-20898905-3	chr2	20898389	20899389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 3 of 24)	intron (NM_001128084, intron 3 of 24)	68832.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	64.07	109.21	41.62	51.28	78.37	38.58	64.43	70.75	20.61
Merged-chr14-7914050-3	chr14	7913543	7914543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081427, intron 25 of 45)	intron (NM_001081427, intron 25 of 45)	80139.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	10.3	6.45	1.85	11.47	1.87	4.82	4.22	7.96	3.75
Merged-chr14-31188893-3	chr14	31188403	31189403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17923.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	216.24	193.99	172.97	234.8	201.53	204.16	196.45	191.9	125.53
Merged-chr5-134314862-3	chr5	134314326	134315326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080749)	promoter-TSS (NM_001080749)	-66.0	NM_010365	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	108.12	111.05	98.97	108.63	93.3	73.95	138.36	101.26	68.7
Merged-chr2-79698426-3	chr2	79697910	79698910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9370.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	27.46	12.44	7.4	33.74	19.59	28.13	23.24	20.78	13.12
Merged-chr3-51340290-3	chr3	51339824	51340824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	CpG	320.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	438.77	369.09	392.18	422.37	281.3	292.58	367.55	256.46	234.2
Merged-chr12-24975008-3	chr12	24974513	24975513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081378)	promoter-TSS (NM_001081378)	81.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	42.33	41.47	104.52	37.78	41.52	90.02	89.78	72.07	43.72
Merged-chr18-62169541-3	chr18	62169092	62170092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10389.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	73.22	79.72	38.85	70.17	69.98	69.93	74.99	56.16	47.46
Merged-chr10-16997013-3	chr10	16996500	16997500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	98782.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	25.17	33.64	37.92	16.87	10.26	18.49	32.74	29.18	36.22
Merged-chr3-153566314-3	chr3	153565806	153566806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	Lx8b|LINE|L1	158827.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	46.91	53.91	55.5	49.93	39.19	33.76	55.98	72.52	53.08
Merged-chr5-111115901-3	chr5	111115386	111116386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	111742.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	77.23	86.17	64.75	70.17	79.77	54.66	77.1	74.73	39.35
Merged-chr7-25659116-3	chr7	25658627	25659627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138586)	promoter-TSS (NM_138586)	-26.0	NM_138586	27998.0	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	132.72	107.82	75.85	132.92	103.1	127.0	192.23	156.09	61.83
Merged-chr6-3498433-3	chr6	3497947	3498947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024260)	promoter-TSS (NM_024260)	54.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	64.07	71.42	41.62	55.33	56.91	50.64	59.15	63.23	21.23
Merged-chr7-28382073-3	chr7	28381566	28382566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2838.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	584.64	419.31	274.71	566.09	406.8	305.44	460.5	473.56	240.44
Merged-chr2-158136461-3	chr2	158135957	158136957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	9935.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	95.53	89.85	57.35	145.74	90.04	87.61	136.25	110.1	80.56
Merged-chr8-31150283-3	chr8	31149768	31150768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-48.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	132.72	249.28	135.04	118.08	182.4	172.01	241.87	304.65	142.39
Merged-chr17-8506252-1	chr17	8505752	8506752	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20549.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	8.58	4.61	3.7	20.92	13.06	17.68	3.17	2.21	3.75
Merged-chr6-125164822-3	chr6	125164309	125165309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	CpG	964.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	263.14	238.69	160.02	291.48	204.33	192.11	203.84	210.47	151.76
Merged-chr12-75449087-3	chr12	75448617	75449617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32336.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	4.0	5.99	25.9	8.1	14.93	10.45	11.62	12.38	6.25
Merged-chr9-25481527-3	chr9	25481037	25482037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026189)	promoter-TSS (NM_026189)	-60.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	116.7	119.34	86.02	153.84	154.88	104.49	146.81	141.49	71.82
Merged-chr16-4894377-3	chr16	4893861	4894861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8261.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	96.68	74.19	79.55	130.9	129.22	131.02	113.01	95.95	68.7
Merged-chr17-73941954-3	chr17	73941452	73942452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	intron (NM_011723, intron 2 of 35)	8244.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	315.77	345.13	188.69	437.22	457.18	184.07	320.02	423.15	113.04
Merged-chr4-108834353-6	chr4	108833879	108834879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356361)	promoter-TSS (NM_001356361)	-77.0	NM_001356361	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	155.03	164.04	135.04	107.95	115.69	150.31	114.07	144.59	74.32
Merged-chr10-60367247-3	chr10	60366744	60367744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 4 of 6)	(CCCCCT)n|Simple_repeat|Simple_repeat	20393.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	29.75	27.19	37.0	38.46	20.53	34.56	41.19	27.86	34.97
Merged-chr17-27556923-3	chr17	27556411	27557411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166537, exon 1 of 5)	5' UTR (NM_001166537, exon 1 of 5)	258.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	364.97	288.45	267.31	293.5	239.32	234.71	246.09	228.6	198.6
Merged-chr9-59727623-3	chr9	59727126	59728126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	19862.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	163.61	156.67	97.12	195.67	139.49	139.06	196.45	182.62	103.67
Merged-chrX-95957065-3	chrX	95956584	95957584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152822)	promoter-TSS (NM_152822)	-110.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	44.62	56.68	37.92	25.64	38.25	40.99	23.24	39.8	30.6
Merged-chr12-28751768-3	chr12	28751215	28752215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201357)	promoter-TSS (NM_201357)	-113.0	NM_201357	380752.0	Mm.273724	NM_201357	ENSMUSG00000036613	Eipr1	D12Ertd604e|Tssc1	EARP complex and GARP complex interacting protein 1	protein-coding	120.7	160.81	132.27	84.34	107.76	96.45	186.94	163.16	73.69
Merged-chr1-155070633-3	chr1	155070128	155071128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	12636.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	80.66	66.81	48.1	68.15	51.78	59.48	69.71	66.33	39.97
Merged-chr10-127642945-3	chr10	127642462	127643462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009284)	promoter-TSS (NM_009284)	-24.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	608.09	442.81	381.08	571.49	383.47	358.49	530.21	672.98	296.03
Merged-chr6-133105648-3	chr6	133105139	133106139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163445, exon 1 of 1)	3' UTR (NM_001163445, exon 1 of 1)	400.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	331.22	369.55	252.51	302.95	346.62	192.91	228.14	196.76	110.54
Merged-chr16-23993414-3	chr16	23992913	23993913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4561.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	18.88	14.75	24.97	26.99	8.4	16.88	9.51	8.4	8.74
Merged-chr12-79141624-3	chr12	79141113	79142113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	MMAR1|DNA|TcMar-Mariner	10825.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	140.73	140.54	90.65	296.2	225.79	181.66	130.97	173.77	95.55
Merged-chr3-89430299-3	chr3	89429805	89430805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293763)	promoter-TSS (NM_001293763)	91.0	NM_001293763	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	33.18	32.25	37.0	42.51	36.85	37.78	28.52	38.03	24.36
Merged-chr9-85577562-3	chr9	85577068	85578068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	171766.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	24.6	35.48	21.27	32.39	27.06	30.54	27.46	15.03	38.72
Merged-chr8-122564769-6	chr8	122564273	122565273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3242.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	335.22	295.82	145.22	302.27	284.57	268.47	289.39	326.32	177.99
Merged-chr9-51009178-3	chr9	51008676	51009676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178710)	promoter-TSS (NM_178710)	-103.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	204.22	185.24	160.94	178.8	157.21	127.8	167.93	114.96	119.91
Merged-chr6-127163057-3	chr6	127162567	127163567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-12019.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	34.9	23.04	9.25	18.89	8.86	12.86	22.18	13.27	5.0
Merged-chr14-55106562-3	chr14	55106060	55107060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303502)	promoter-TSS (NM_001303502)	33.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	63.5	59.44	98.97	71.52	64.84	77.16	97.17	91.97	43.72
Merged-chr7-141265001-3	chr7	141264523	141265523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252601, intron 4 of 9)	intron (NM_001252601, intron 4 of 9)	1401.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	57.78	52.53	40.7	44.53	40.12	34.56	61.26	61.02	47.46
Merged-chr10-108185440-3	chr10	108184936	108185936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	23036.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	14.3	10.14	0.92	13.49	8.86	8.04	6.34	6.19	5.0
Merged-chr10-122047821-3	chr10	122047333	122048333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	-518.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	7.44	0.92	5.55	9.45	4.2	2.41	9.51	1.33	2.5
Merged-chr11-54156079-3	chr11	54155580	54156580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	55156.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	41.76	17.51	48.1	52.63	20.06	37.78	31.69	25.2	13.74
Merged-chr11-6546691-4	chr11	6546154	6547154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190343)	promoter-TSS (NM_001190343)	-233.0	NM_146014	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	245.98	122.11	161.87	204.44	133.89	160.76	170.05	110.98	120.53
Merged-chr15-96466675-3	chr15	96466173	96467173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5830.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	17.73	11.06	9.25	57.35	46.18	31.35	9.51	7.96	2.5
Merged-chr7-45395810-3	chr7	45395314	45396314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-72.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	279.73	307.34	231.24	240.2	268.24	242.74	246.09	282.1	174.24
Merged-chr6-115463141-3	chr6	115462644	115463644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001127330, exon 6 of 8)	exon (NM_001127330, exon 6 of 8)	41078.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	85.81	77.87	66.6	106.61	94.23	59.48	68.65	67.65	43.72
Merged-chr5-74671655-1	chr5	74671155	74672155	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159578, intron 1 of 12)	intron (NM_001159578, intron 1 of 12)	6217.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.14	2.76	7.4	13.49	7.46	11.25	2.11	3.1	5.0
Merged-chr8-91134091-3	chr8	91133528	91134528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302337)	promoter-TSS (NM_001302337)	-1.0	NM_001302268	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	12.01	16.13	22.2	22.27	23.33	19.29	24.29	14.15	6.87
Merged-chr2-127079660-3	chr2	127079169	127080169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	9012.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	264.86	227.17	219.21	295.53	176.81	211.4	247.15	252.04	172.37
Merged-chrX-101429572-3	chrX	101429086	101430086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252518)	promoter-TSS (NM_001252518)	-65.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	134.43	195.37	116.54	167.33	167.01	143.88	148.92	191.02	75.57
Merged-chr11-102309129-3	chr11	102308631	102309631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044383, intron 12 of 19)	CpG	8156.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	20.02	18.43	29.6	29.69	20.06	20.09	28.52	20.34	18.74
Merged-chr17-26715546-3	chr17	26715027	26716027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029870)	promoter-TSS (NM_029870)	-123.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	108.12	79.25	71.22	135.62	96.57	82.79	165.82	81.8	40.59
Merged-chr1-164248918-3	chr1	164248413	164249413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-133.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	68.65	76.49	84.17	114.7	97.5	65.91	103.51	109.22	60.58
Merged-chr14-60265142-3	chr14	60264625	60265625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144843)	promoter-TSS (NM_144843)	-80.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	155.6	143.76	78.62	128.87	106.36	126.19	111.96	90.2	86.18
Merged-chr12-8501903-4	chr12	8501435	8502435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	169.33	253.89	160.94	202.42	250.52	194.52	208.07	267.95	171.75
Merged-chr2-28468028-3	chr2	28467523	28468523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166031)	promoter-TSS (NM_001166031)	-43.0	NM_080452	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	24.03	17.51	20.35	35.76	21.93	27.33	24.29	22.11	24.36
Merged-chr13-74640076-4	chr13	74639607	74640607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030711, intron 1 of 18)	CpG	254.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	181.91	217.49	128.57	253.69	209.0	168.8	251.37	240.1	96.18
Merged-chr7-122231345-3	chr7	122230854	122231854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HERVL74-int|LTR|ERVL	11858.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	76.08	85.71	55.5	84.34	68.11	75.56	66.54	81.36	74.94
Merged-chr15-81112732-3	chr15	81112226	81113226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-7679.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	149.31	133.63	83.25	122.8	89.57	128.61	122.52	138.4	83.69
Merged-chr8-86885263-3	chr8	86884763	86885763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030563)	promoter-TSS (NM_030563)	-5.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	116.13	95.38	96.2	128.2	58.78	79.58	96.11	37.14	65.58
Merged-chr1-53851079-3	chr1	53850597	53851597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	1673.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	145.3	136.39	116.54	132.92	103.1	96.45	135.19	133.53	73.07
Merged-chr3-88553006-3	chr3	88552510	88553510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-59.0	NR_155541	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	141.87	156.67	126.72	145.74	136.22	135.84	122.52	140.17	121.16
Merged-chr1-128747523-2	chr1	128747013	128748013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-155214.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	17.73	14.28	7.4	51.28	40.12	45.01	2.11	1.33	2.5
Merged-chrM-15566-2	chrM	15076	16076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											275.73	216.57	24.97	167.33	43.85	38.58	101.39	55.27	19.36
Merged-chr4-150557059-3	chr4	150556540	150557540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	95134.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	184.2	156.67	131.34	146.41	123.16	114.14	134.14	135.75	69.95
Merged-chr16-24891711-3	chr16	24891253	24892253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-167886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	36.61	12.44	20.35	34.41	39.19	34.56	41.19	35.82	19.98
Merged-chr9-25151861-3	chr9	25151371	25152371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-90.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	311.2	299.51	264.54	289.45	271.04	202.55	318.97	250.27	183.61
Merged-chr10-127636817-3	chr10	127636298	127637298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6188.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	81.23	46.54	22.2	93.79	34.52	43.4	42.25	27.86	13.74
Merged-chr11-106122889-3	chr11	106122369	106123369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 5 of 15)	intron (NM_011947, intron 5 of 15)	37058.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	72.08	88.01	65.67	74.89	54.58	102.88	65.48	72.96	74.94
Merged-chr1-162740567-3	chr1	162740075	162741075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081290)	promoter-TSS (NM_001081290)	-19.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	300.33	364.02	302.46	257.07	341.48	277.31	252.43	286.52	187.98
Merged-chr2-130906463-3	chr2	130905956	130906956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009730)	promoter-TSS (NM_009730)	-39.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	37.18	29.49	27.75	56.0	27.99	47.42	39.08	22.99	15.61
Merged-chr13-113485673-3	chr13	113485141	113486141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 2 of 6)	intron (NR_045501, intron 2 of 6)	17203.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	129.28	109.67	58.27	134.94	75.57	111.73	123.57	99.93	45.59
Merged-chr10-41595804-3	chr10	41595303	41596303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 30 of 47)	intron (NM_001358562, intron 30 of 47)	27787.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	80.66	64.05	35.15	49.25	26.59	36.17	74.99	91.09	46.84
Merged-chr2-72379622-3	chr2	72379115	72380115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 8 of 19)	intron (NM_023057, intron 8 of 19)	93914.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	16.59	16.59	24.05	12.82	7.0	11.25	39.08	42.45	25.61
Merged-chr10-80855196-3	chr10	80854674	80855674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025349)	promoter-TSS (NM_025349)	-18.0	NM_001359149	66094.0	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	21.17	17.97	26.82	15.52	14.0	18.49	13.73	9.29	6.87
Merged-chr19-29420180-3	chr19	29419679	29420679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	9260.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	121.85	148.83	71.22	146.41	119.43	75.56	193.28	220.64	83.06
Merged-chr14-25473171-3	chr14	25472720	25473720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14035.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	355.82	366.78	234.01	367.72	317.23	248.37	293.62	406.79	147.39
Merged-chr16-30948424-3	chr16	30947910	30948910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	133022.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	89.81	44.24	30.52	80.29	33.59	41.8	22.18	24.32	10.62
Merged-chr15-8445477-3	chr15	8444978	8445978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-4777	-1015.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	78.37	131.78	86.02	102.56	116.16	118.16	118.29	153.87	108.67
Merged-chr4-154928968-3	chr4	154928463	154929463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178931)	promoter-TSS (NM_178931)	-886.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	421.6	406.87	251.59	409.55	321.42	273.29	343.26	458.09	209.84
Merged-chr11-117939896-3	chr11	117939379	117940379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29487.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	12.01	7.37	3.7	12.82	3.73	7.23	4.22	4.42	5.0
Merged-chr2-14229279-3	chr2	14228796	14229796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-118.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	117.84	124.87	108.22	124.15	79.77	84.4	129.91	125.58	101.8
Merged-chr19-7206203-4	chr19	7205684	7206684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134150)	promoter-TSS (NM_134150)	100.0	NM_134150	107260.0	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	245.41	217.03	179.44	235.48	205.26	193.71	230.25	202.51	120.53
Merged-chr15-12376327-3	chr15	12375810	12376810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54814.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	147.02	127.18	60.12	115.38	105.9	123.78	88.72	90.64	72.45
Merged-chr16-36935405-1	chr16	36934905	36935905	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	422.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	406.16	392.59	269.16	380.54	344.75	327.95	425.64	518.66	207.97
Merged-chr18-57591765-3	chr18	57591271	57592271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-39374.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	33.75	23.04	12.95	18.22	19.59	16.08	25.35	14.59	19.36
Merged-chrUn_JH584304-21087-1	chrUn_JH584304	20587	21587	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	38602.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	114.07	81.8	0.0
Merged-chr15-66684912-3	chr15	66684402	66685402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 10 of 47)	MTD|LTR|ERVL-MaLR	14132.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	22.31	22.58	16.65	13.49	7.93	14.47	15.84	14.15	20.61
Merged-chr14-121797841-3	chr14	121797346	121798346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-112.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	26.31	10.14	8.32	37.78	23.33	16.08	21.12	7.07	5.0
Merged-chr18-36735032-3	chr18	36734518	36735518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-52.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	148.16	157.13	135.97	178.8	146.02	165.58	175.33	182.17	109.29
Merged-chr7-126928859-3	chr7	126928354	126929354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172747)	promoter-TSS (NM_172747)	-25.0	NM_172747	233877.0	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	69.22	50.23	52.72	44.53	39.65	53.05	57.03	50.41	42.47
Merged-chr13-55212208-3	chr13	55211718	55212718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	2436.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	152.74	132.25	138.74	161.93	124.09	138.25	199.62	116.73	123.66
Merged-chr13-58402391-5	chr13	58401889	58402889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301343)	promoter-TSS (NM_001301343)	123.0	NR_153504	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	463.36	364.48	283.04	379.87	307.9	282.93	351.71	317.03	227.33
Merged-chr12-85374283-3	chr12	85373773	85374773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	CpG	444.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	447.35	283.38	201.64	421.02	263.11	260.43	343.26	342.68	203.6
Merged-chr15-82942250-1	chr15	82941750	82942750	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17046.0	NR_037241	100526477.0		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	5.15	0.92	1.85	2.02	2.33	3.22	12.67	6.19	6.25
Merged-chr17-86167547-3	chr17	86167043	86168043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011104)	promoter-TSS (NM_011104)	-242.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	222.53	178.78	171.12	179.47	189.87	114.14	166.88	135.75	100.55
Merged-chr1-53825105-3	chr1	53824589	53825589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-24335.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	133.29	99.07	79.55	109.3	99.37	65.11	64.43	62.79	46.22
Merged-chr4-139308077-3	chr4	139307586	139308586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145384, intron 1 of 8)	intron (NM_145384, intron 1 of 8)	2622.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	25.74	11.98	14.8	26.31	16.79	29.74	17.96	19.01	21.86
Merged-chr9-64830232-3	chr9	64829742	64830742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	19231.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	84.09	68.66	49.95	97.83	69.51	61.89	92.94	102.58	49.96
Merged-chr4-128811566-3	chr4	128811058	128812058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-5446.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	49.2	39.63	41.62	56.0	60.65	77.16	57.03	61.46	34.35
Merged-chr8-70212555-5	chr8	70211996	70212996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-215.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	186.49	127.18	112.84	135.62	100.3	90.02	197.51	192.34	103.67
Merged-chr12-41565878-1	chr12	41565378	41566378	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-79821.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.58	4.15	3.7	5.4	11.66	5.63	1.06	0.88	2.5
Merged-chr2-59401174-3	chr2	59400667	59401667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14485.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	84.09	74.65	49.02	78.27	62.51	103.69	80.27	91.09	61.83
Merged-chr3-95133980-3	chr3	95133434	95134434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153121)	promoter-TSS (NM_153121)	78.0	NM_027013	69269.0	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	78.37	73.73	61.05	68.15	43.85	36.97	72.88	84.9	32.48
Merged-chr10-99441217-3	chr10	99440711	99441711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167960.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	16.02	15.67	7.4	8.77	12.13	9.65	6.34	2.65	9.99
Merged-chrX-94122561-3	chrX	94122063	94123063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358356, intron 1 of 8)	CpG	844.0	NM_011768	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	285.45	249.75	179.44	298.23	254.71	147.09	267.21	209.15	143.64
Merged-chrUn_JH584304-53958-1	chrUn_JH584304	53458	54458	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	5731.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	40.14	19.46	0.0
Merged-chr8-86888740-3	chr8	86888241	86889241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3483.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	60.64	87.09	65.67	78.94	83.97	123.78	49.64	45.54	59.33
Merged-chr10-75517925-3	chr10	75517424	75518424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347201)	promoter-TSS (NM_001347201)	48.0	NM_001347201	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	202.51	244.68	156.32	193.64	160.01	200.14	213.35	256.01	124.28
Merged-chr2-163642932-3	chr2	163642418	163643418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012032, intron 1 of 9)	RLTR4_Mm|LTR|ERV1	-1932.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	34.32	54.37	54.57	67.47	69.51	64.3	52.81	83.57	40.59
Merged-chrX-48343574-3	chrX	48343041	48344041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	intron (NM_178782, intron 2 of 14)	2183.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	6.86	5.53	5.55	6.75	4.2	9.65	8.45	6.19	5.0
Merged-chr7-24884061-3	chr7	24883619	24884619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-473.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	81.8	80.64	90.65	62.07	66.71	122.18	81.33	81.36	94.93
Merged-chr1-74332500-3	chr1	74331992	74332992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019999)	promoter-TSS (NM_019999)	-118.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	9.72	8.29	1.85	21.59	10.73	6.43	16.9	5.31	6.25
Merged-chr3-65666465-6	chr3	65665930	65666930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037923, intron 1 of 2)	CpG	202.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	428.47	316.1	163.72	377.17	319.09	217.02	347.48	287.41	107.42
Merged-chr6-142573037-3	chr6	142572566	142573566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1452.0	NM_001330366	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	2.86	6.91	5.55	7.42	14.93	12.86	6.34	3.54	5.0
Merged-chr16-33641987-3	chr16	33641491	33642491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-42475.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	33.18	31.79	17.57	29.69	30.79	12.86	27.46	26.97	9.99
Merged-chr8-69749855-6	chr8	69749349	69750349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001200023, exon 1 of 4)	5' UTR (NM_001200023, exon 1 of 4)	113.0	NM_001200023	620419.0	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	249.99	285.69	160.02	217.93	210.4	192.11	252.43	244.52	151.14
Merged-chr15-97164843-3	chr15	97164346	97165346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	2398.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	143.01	152.06	124.87	155.19	129.69	155.93	159.48	161.39	112.42
Merged-chr5-149636336-3	chr5	149635825	149636825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013559)	promoter-TSS (NM_013559)	-10.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	44.62	43.77	37.92	42.51	48.98	69.93	33.8	39.35	33.72
Merged-chr12-100203584-3	chr12	100203073	100204073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313934, intron 2 of 5)	intron (NM_001313934, intron 2 of 5)	3429.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	66.93	63.13	42.55	62.07	47.58	32.15	50.7	40.68	29.35
Merged-chr9-116366352-3	chr9	116365866	116366866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177186.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	14.3	7.83	13.87	14.17	9.33	23.31	3.17	5.75	3.75
Merged-chr15-67116910-3	chr15	67116415	67117415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	intron (NM_009177, intron 3 of 8)	59967.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	56.06	33.18	30.52	59.38	36.39	49.83	33.8	29.18	15.61
Merged-chr5-23908433-1	chr5	23907933	23908933	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56200.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	5.72	2.76	3.7	8.77	7.46	7.23	3.17	0.88	5.0
Merged-chr1-191990195-3	chr1	191989687	191990687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8447.0	NR_039566	100628582.0		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	83.52	76.49	48.1	74.89	86.77	69.13	90.83	100.37	49.96
Merged-chr2-49313291-3	chr2	49312775	49313775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290656, intron 8 of 9)	intron (NM_001290656, intron 8 of 9)	67375.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	7.44	15.21	4.62	14.17	11.66	6.43	10.56	14.15	7.49
Merged-chr18-44686916-1	chr18	44686416	44687416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-24650.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	17.73	13.36	11.1	2.7	1.87	5.63	4.22	3.98	3.75
Merged-chr12-36157912-3	chr12	36157430	36158430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 1 of 9)	intron (NM_146033, intron 1 of 9)	806.0	NM_146033	217473.0	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	53.77	68.66	50.87	66.8	86.3	66.71	80.27	65.44	52.46
Merged-chr12-86832362-3	chr12	86831847	86832847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52467.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	46.91	32.25	18.5	66.8	47.58	32.15	42.25	34.93	24.36
Merged-chr19-53855173-3	chr19	53854666	53855666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-37065.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	25.17	25.8	22.2	29.69	39.19	46.62	35.91	56.6	19.98
Merged-chr7-24530547-3	chr7	24530066	24531066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153134)	promoter-TSS (NM_153134)	-82.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	199.07	182.47	99.89	159.23	141.82	117.35	183.78	170.23	84.94
Merged-chr11-116110796-3	chr11	116110307	116111307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172570)	promoter-TSS (NM_172570)	-572.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	495.97	418.39	252.51	454.08	320.49	262.84	287.28	340.47	176.74
Merged-chr2-168170408-3	chr2	168169911	168170911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-15898.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	32.04	27.19	30.52	30.36	38.72	23.31	52.81	33.6	21.23
Merged-chr16-20141091-3	chr16	20140561	20141561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145931)	promoter-TSS (NM_001145931)	-2.0	NM_001033237	208146.0	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	108.12	104.6	72.15	89.06	60.18	53.85	94.0	52.62	34.35
Merged-chr11-103281937-3	chr11	103281448	103282448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14547.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	91.53	67.74	52.72	95.14	56.91	97.26	65.48	84.9	46.84
Merged-chr11-77981854-3	chr11	77981344	77982344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174852)	promoter-TSS (NM_174852)	-972.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	169.9	223.02	97.12	153.84	150.22	125.39	137.3	236.56	90.56
Merged-chr1-172513117-3	chr1	172512610	172513610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8020.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	121.85	94.46	37.92	78.27	44.78	38.58	154.2	225.06	108.67
Merged-chr15-67345681-3	chr15	67345165	67346165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 7 of 8)	RMER19A|LTR|ERVK	118896.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	44.62	64.97	49.02	70.17	60.65	95.65	72.88	60.13	54.33
Merged-chr1-106695944-3	chr1	106695452	106696452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	ORR1F|LTR|ERVL-MaLR	18338.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	18.88	11.98	14.8	12.82	16.79	14.47	14.79	25.2	15.61
Merged-chr10-82900291-3	chr10	82899805	82900805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33679.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	22.88	14.28	4.62	34.41	22.39	19.29	101.39	105.68	48.71
Merged-chr13-56522425-3	chr13	56521920	56522920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346732)	promoter-TSS (NM_001346732)	-52.0	NM_178674	213311.0	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	3.43	1.38	3.7	15.52	9.33	3.22	9.51	5.31	11.24
Merged-chr1-166409313-3	chr1	166408806	166409806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175170, exon 2 of 6)	5' UTR (NM_175170, exon 2 of 6)	522.0	NM_001142948	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	45.19	17.97	7.4	64.77	16.79	24.11	46.47	19.01	13.74
Merged-chr2-59243708-4	chr2	59243183	59244183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	GA-rich|Low_complexity|Low_complexity	82833.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	89.81	84.32	59.2	85.01	63.91	65.11	88.72	91.09	35.6
Merged-chr18-10725572-3	chr18	10725111	10726111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144860)	promoter-TSS (NM_144860)	-14.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	158.46	94.46	172.97	157.21	92.37	103.69	182.72	74.73	103.67
Merged-chr18-11691043-2	chr18	11690553	11691553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	RLTR13B1|LTR|ERVK	33704.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	66.36	69.58	75.85	2.02	6.06	6.43	68.65	96.39	71.2
Merged-chr11-86624488-3	chr11	86624000	86625000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-40342.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	168.76	136.39	98.97	161.93	125.49	131.82	194.34	211.36	108.04
Merged-chr2-163602286-3	chr2	163601783	163602783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-31.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	226.53	185.24	137.82	280.68	211.79	201.75	239.75	183.06	85.56
Merged-chr2-31572661-3	chr2	31572142	31573142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033389)	promoter-TSS (NM_001033389)	-9.0	NM_001033389	320267.0	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	58.35	37.32	64.75	66.12	59.25	74.75	44.36	28.74	16.86
Merged-chr16-90445596-3	chr16	90445095	90446095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 2 of 10)	intron (NM_015755, intron 2 of 10)	59198.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	17.16	18.43	5.55	14.84	12.6	4.02	14.79	12.38	7.49
Merged-chr10-121586156-3	chr10	121585667	121586667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	627.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	386.14	326.24	227.54	435.87	276.64	198.54	402.41	336.49	181.74
Merged-chr17-86378794-3	chr17	86378291	86379291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-91613.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	13.73	13.36	9.25	25.64	17.26	29.74	14.79	11.05	9.99
Merged-chrX-169106366-3	chrX	169105860	169106860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-6518.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	20.02	19.81	6.47	33.06	15.39	17.68	21.12	18.13	7.49
Merged-chr14-121423113-3	chr14	121422597	121423597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43867.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	91.53	129.48	90.65	105.26	70.91	94.04	120.41	119.39	63.08
Merged-chr7-44373948-3	chr7	44373453	44374453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027049, intron 2 of 5)	intron (NM_027049, intron 2 of 5)	1077.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	52.63	39.63	43.47	57.35	41.05	45.01	61.26	47.75	33.72
Merged-chr18-50088925-3	chr18	50088427	50089427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-35265.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	64.64	71.88	80.47	83.66	65.31	127.0	95.06	109.22	83.06
Merged-chr7-49070813-3	chr7	49070314	49071314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	91344.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	15.45	29.49	2.77	17.54	15.86	10.45	12.67	14.15	5.0
Merged-chr3-36066053-3	chr3	36065565	36066565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172678)	promoter-TSS (NM_172678)	86.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	57.78	52.07	52.72	52.63	46.18	57.07	70.76	59.25	39.97
Merged-chr2-58161142-3	chr2	58160646	58161646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	57.78	41.93	34.22	107.28	93.77	123.78	67.6	69.42	39.97
Merged-chr17-83214306-3	chr17	83213819	83214819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-964.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	71.51	117.04	114.69	94.46	102.17	150.31	148.92	134.86	114.29
Merged-chr3-55129492-3	chr3	55128979	55129979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 8 of 8)	MER73|LTR|ERVL	-7860.0	NM_001290138	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	85.81	87.09	68.45	85.01	82.57	64.3	114.07	133.53	60.58
Merged-chr11-96075867-3	chr11	96075361	96076361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161419)	promoter-TSS (NM_001161419)	-167.0	NM_007506	11951.0	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	109.83	136.39	86.02	105.26	97.03	77.97	119.35	145.92	54.96
Merged-chr11-88718466-3	chr11	88717953	88718953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201341)	promoter-TSS (NM_001201341)	-186.0	NM_001201341	76626.0	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	199.07	132.71	86.95	178.8	123.16	130.21	214.41	92.41	71.2
Merged-chr5-73286814-3	chr5	73286300	73287300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2616.0	NR_040687	72276.0	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	10.3	14.75	15.72	5.4	11.2	4.02	10.56	5.31	9.99
Merged-chr8-18954148-3	chr8	18953655	18954655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3180.0	NM_001113350	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	10.3	5.07	0.0	10.12	7.93	4.82	3.17	7.52	7.49
Merged-chr9-75273750-2	chr9	75273248	75274248	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081322, intron 19 of 40)	intron (NM_001081322, intron 19 of 40)	-32540.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	8.01	4.15	3.7	6.75	9.8	3.22	21.12	10.61	3.75
Merged-chr10-122570012-3	chr10	122569520	122570520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-129.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	169.33	133.17	105.44	160.58	107.76	99.67	186.94	212.24	114.91
Merged-chr6-113442573-3	chr6	113442077	113443077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205025)	promoter-TSS (NM_001205025)	8.0	NM_001243739	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	64.07	59.9	57.35	72.87	54.58	95.65	70.76	65.0	46.22
Merged-chr11-3124038-3	chr11	3123553	3124553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	32.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	74.37	101.83	101.74	70.85	63.45	84.4	111.96	90.64	78.07
Merged-chr4-33245089-3	chr4	33244569	33245569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033225)	TTS (NM_001033225)	3718.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	77.23	95.84	75.85	106.61	41.05	62.7	82.38	98.6	56.21
Merged-chr17-37044897-3	chr17	37044418	37045418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-1048.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	66.93	83.4	39.77	56.68	28.46	42.6	50.7	46.87	14.36
Merged-chr1-37865180-3	chr1	37864660	37865660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207228)	promoter-TSS (NM_207228)	-78.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	73.79	47.46	48.1	53.3	36.39	57.87	64.43	41.12	36.85
Merged-chr6-11907725-3	chr6	11907161	11908161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010886)	promoter-TSS (NM_010886)	-168.0	NM_001362123	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	82.95	67.27	72.15	118.08	65.78	69.93	99.28	72.96	30.6
Merged-chr10-80741257-3	chr10	80740776	80741776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007460, intron 1 of 30)	intron (NM_007460, intron 1 of 30)	999.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	180.77	205.51	143.37	128.87	113.83	141.47	97.17	174.66	113.66
Merged-chr6-25809278-3	chr6	25808753	25809753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133931)	promoter-TSS (NM_133931)	-27.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	280.88	293.06	198.87	277.31	352.21	204.16	260.88	391.32	169.87
Merged-chr15-78244809-3	chr15	78244316	78245316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	5.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	112.69	113.35	110.99	108.63	82.11	133.43	109.84	114.08	88.06
Merged-chr1-65186596-3	chr1	65186105	65187105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111320)	promoter-TSS (NM_001111320)	-80.0	NM_001310624	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	253.99	237.3	172.04	269.89	322.36	157.54	296.79	351.08	143.02
Merged-chr19-38054887-3	chr19	38054389	38055389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360663)	promoter-TSS (NM_001360663)	-95.0	NM_028293	74107.0	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	57.21	42.85	14.8	39.81	39.65	36.17	51.75	56.6	22.48
Merged-chr2-72260876-3	chr2	72260332	72261332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	127.0	91.24	89.72	105.26	64.38	97.26	130.97	142.82	103.05
Merged-chr11-121259906-3	chr11	121259376	121260376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080932)	promoter-TSS (NM_001080932)	-111.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	121.28	120.73	81.4	144.39	142.75	90.02	142.59	117.17	71.2
Merged-chr16-50528966-3	chr16	50528497	50529497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	CpG	495.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	72.65	65.89	83.25	128.2	113.83	90.83	103.51	91.53	75.57
Merged-chr3-95106927-3	chr3	95106416	95107416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008847)	promoter-TSS (NM_008847)	14.0	NM_008847	18720.0	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	82.38	92.62	69.37	72.87	68.58	53.05	118.29	107.89	61.2
Merged-chrUn_JH584304-36335-1	chrUn_JH584304	35835	36835	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	23354.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	69.71	52.62	0.0
Merged-chr11-87443491-3	chr11	87443000	87444000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	15909.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	95.53	70.5	36.07	95.14	70.91	46.62	60.2	73.4	37.47
Merged-chr4-150212675-3	chr4	150212191	150213191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B1|LTR|ERVK	-11556.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	131.57	123.95	93.42	124.82	112.43	111.73	149.98	178.19	81.19
Merged-chr17-56584861-3	chr17	56584349	56585349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355463)	promoter-TSS (NM_001355463)	-133.0	NM_001163300	224903.0	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	462.79	411.02	252.51	381.22	364.81	229.08	318.97	311.29	192.35
Merged-chrX-85797681-3	chrX	85797153	85798153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20834.0	NM_001294138	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	29.75	39.17	24.97	42.51	28.92	51.44	34.85	36.26	36.85
Merged-chr5-115535838-3	chr5	115535327	115536327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-23640.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	86.95	94.92	116.54	127.52	120.83	150.31	124.63	153.87	100.55
Merged-chr2-101881969-3	chr2	101881475	101882475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	1052.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	50.34	55.29	73.07	91.76	65.78	57.07	74.99	61.9	40.59
Merged-chr16-17222368-3	chr16	17221864	17222864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-11223.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	16.59	21.66	38.85	9.45	9.33	17.68	9.51	5.75	21.23
Merged-chr16-32177064-3	chr16	32176564	32177564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2736.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	156.74	115.2	106.37	136.97	81.17	123.78	143.64	141.05	96.8
Merged-chr7-116476490-3	chr7	116475951	116476951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27918.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	32.61	32.72	29.6	38.46	27.52	50.64	28.52	33.6	30.6
Merged-chr16-91354760-3	chr16	91354259	91355259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18024.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	390.14	358.49	186.84	372.44	288.77	222.65	252.43	351.08	167.37
Merged-chr6-89644553-3	chr6	89644050	89645050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153162, intron 1 of 15)	CpG	562.0	NM_001178059	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	80.66	67.27	82.32	97.16	94.23	106.1	103.51	81.36	58.71
Merged-chrX-60001699-3	chrX	60001199	60002199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 1 of 6)	MTD|LTR|ERVL-MaLR	2235.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	10.3	10.6	11.1	19.57	10.26	18.49	22.18	19.9	16.24
Merged-chr6-88842211-3	chr6	88841719	88842719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030251)	promoter-TSS (NM_030251)	-284.0	NR_155424	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	48.62	54.83	70.3	54.65	42.92	94.85	96.11	70.3	66.82
Merged-chr14-25854255-3	chr14	25853754	25854754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	12099.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	70.36	79.25	68.45	105.93	88.64	65.11	79.21	87.55	37.47
Merged-chr17-56812233-3	chr17	56811739	56812739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	RMER5|LTR|ERV1	18769.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	67.5	28.11	12.02	37.78	16.33	3.22	39.08	18.57	7.49
Merged-chr9-72968573-3	chr9	72968008	72969008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 4 of 6)	intron (NM_001163725, intron 4 of 6)	9723.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	152.74	124.87	43.47	157.88	112.43	67.52	88.72	116.73	61.83
Merged-chr6-120193335-3	chr6	120192836	120193836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347432)	promoter-TSS (NM_001347432)	-487.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	24.03	19.35	9.25	27.66	32.66	16.08	23.24	27.41	9.99
Merged-chr2-164833521-3	chr2	164833039	164834039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	57.0	NM_001082974	415115.0	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	267.15	242.83	184.99	317.79	365.74	268.47	333.75	436.42	182.99
Merged-chr1-131976766-3	chr1	131976284	131977284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145977, exon 2 of 5)	5' UTR (NM_145977, exon 2 of 5)	6175.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	177.34	210.58	191.47	196.34	171.21	188.09	167.93	264.42	122.41
Merged-chr15-38473865-3	chr15	38473362	38474362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	16685.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	215.66	174.18	164.64	190.27	130.62	153.52	165.82	150.78	108.67
Merged-chr6-8687368-3	chr6	8686862	8687862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71096.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	38.9	53.91	49.95	74.89	41.99	72.34	65.48	65.44	42.47
Merged-chr16-31837616-3	chr16	31837124	31838124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 12 of 22)	intron (NM_001357281, intron 12 of 22)	-41186.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	252.85	216.57	125.79	222.66	151.62	125.39	202.79	214.89	79.94
Merged-chr17-29601571-3	chr17	29601065	29602065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-5260.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	13.16	11.98	16.65	18.89	5.13	12.86	15.84	15.03	11.24
Merged-chr5-66088449-3	chr5	66087954	66088954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9725.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	113.27	99.53	84.17	107.28	60.18	77.16	128.85	108.77	71.2
Merged-chr2-61593599-3	chr2	61593108	61594108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149324, intron 1 of 9)	intron (NR_149324, intron 1 of 9)	511.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	665.87	697.63	443.98	594.43	554.68	462.98	549.22	619.48	316.01
Merged-chr10-75667432-6	chr10	75666922	75667922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	CpG	-23414.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	99.54	90.77	128.57	95.81	84.44	122.98	108.79	114.08	61.2
Merged-chr11-87756228-2	chr11	87755714	87756714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-650.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	173.9	182.93	146.14	153.16	138.09	126.19	208.07	202.07	170.5
Merged-chr11-106428257-3	chr11	106427745	106428745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 5 of 21)	intron (NM_023913, intron 5 of 21)	-45464.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	76.08	99.07	63.82	85.69	66.24	65.11	85.55	78.71	68.7
Merged-chr2-174076291-3	chr2	174075812	174076812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172675)	promoter-TSS (NM_172675)	-739.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	70.36	83.86	119.32	73.54	108.7	114.14	105.62	125.13	78.69
Merged-chr9-44320308-3	chr9	44319749	44320749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	33.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	59.49	62.67	53.65	80.97	48.52	65.11	47.53	52.18	31.23
Merged-chr2-98662333-3	chr2	98661833	98662833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1194676.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	1989.03	5972.68	1718.56	2018.75	6092.13	1533.63	3742.06	3792.91	1995.37
Merged-chr4-145252758-3	chr4	145252266	145253266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5896.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	20.02	19.35	12.95	14.84	12.6	16.08	13.73	16.36	10.62
Merged-chr3-89233652-3	chr3	89233168	89234168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183037)	TTS (NM_183037)	4612.0	NM_013605	17829.0	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	21.74	11.06	14.8	29.01	18.19	32.15	19.01	14.15	16.24
Merged-chr8-84147949-3	chr8	84147454	84148454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145970)	promoter-TSS (NM_145970)	-84.0	NM_001163752	74666.0	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	26.89	20.74	33.3	32.39	35.45	29.74	39.08	23.88	22.48
Merged-chr8-83749435-1	chr8	83748935	83749935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8124.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	448.49	409.18	223.84	462.86	432.45	284.54	328.47	512.47	171.75
Merged-chr15-74960942-3	chr15	74960441	74961441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5835.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	122.99	94.0	91.57	113.35	83.97	94.04	116.18	104.35	54.96
Merged-chr14-120277222-3	chr14	120276769	120277769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	1600.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	339.8	346.05	147.99	326.56	282.24	188.89	324.25	359.04	186.73
Merged-chr10-59235382-3	chr10	59234868	59235868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	13446.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	107.55	108.28	78.62	133.59	99.37	138.25	166.88	164.04	76.82
Merged-chr6-3481908-3	chr6	3481410	3482410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 3 of 9)	intron (NM_178899, intron 3 of 9)	12588.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	10.3	15.67	5.55	12.82	10.73	12.86	13.73	4.86	19.36
Merged-chr18-61177125-3	chr18	61176627	61177627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178277)	promoter-TSS (NM_178277)	-77.0	NM_134134	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	189.92	188.92	110.99	197.02	203.86	155.13	212.29	148.13	112.42
Merged-chr2-167661711-3	chr2	167661195	167662195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-151.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	188.78	150.22	151.69	229.4	167.48	150.31	185.89	169.79	99.3
Merged-chr17-21566420-3	chr17	21565910	21566910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	-568.0	NM_001002008	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	44.62	32.25	32.37	31.71	30.32	26.53	54.92	68.98	54.96
Merged-chr11-70459854-3	chr11	70459353	70460353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151497, exon 1 of 6)	non-coding (NR_151497, exon 1 of 6)	131.0	NR_151499	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	220.81	175.1	125.79	271.91	188.47	159.95	198.56	230.81	134.27
Merged-chr3-95987918-3	chr3	95987430	95988430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045872)	TTS (NR_045872)	2420.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	177.91	180.63	156.32	166.66	145.08	155.93	217.57	265.3	147.39
Merged-chr11-29875005-3	chr11	29874528	29875528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	RMER16_Mm|LTR|ERVK	-49360.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	32.61	48.84	29.6	45.88	52.25	52.25	36.97	30.07	23.73
Merged-chr17-51209751-3	chr17	51209261	51210261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30409.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	36.61	44.24	48.1	32.39	32.66	60.28	54.92	38.91	45.59
Merged-chr9-53706484-3	chr9	53705970	53706970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175562)	promoter-TSS (NM_175562)	-238.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	121.28	136.85	99.89	99.86	87.7	139.06	122.52	117.17	85.56
Merged-chr6-85374809-3	chr6	85374320	85375320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177466)	promoter-TSS (NM_177466)	-186.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	44.62	29.95	29.6	51.28	53.18	50.64	33.8	30.07	27.48
Merged-chr6-100287415-4	chr6	100286851	100287851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	7.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	136.72	88.93	95.27	151.81	98.9	68.32	151.03	70.75	45.59
Merged-chr6-58831642-4	chr6	58831120	58832120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361967, exon 1 of 23)	5' UTR (NM_001361967, exon 1 of 23)	155.0	NM_001361966	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	62.35	43.77	59.2	98.51	53.18	69.13	61.26	48.64	38.72
Merged-chr8-11477938-3	chr8	11477439	11478439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126558)	promoter-TSS (NR_126558)	10.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	543.45	588.88	381.08	600.5	653.11	326.34	559.78	716.31	270.42
Merged-chr16-23346974-3	chr16	23346470	23347470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	MTEa|LTR|ERVL-MaLR	56500.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	38.33	30.87	31.45	35.76	19.13	24.92	27.46	30.95	20.61
Merged-chr14-62245706-5	chr14	62245204	62246204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47275.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	172.19	178.78	86.95	136.29	96.1	100.47	135.19	111.87	84.31
Merged-chr1-72254767-3	chr1	72254234	72255234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	10741.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	25.17	32.25	61.05	66.12	41.52	95.65	89.78	53.94	36.85
Merged-chr16-4913847-3	chr16	4913337	4914337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 5 of 17)	B3|SINE|B2	-25274.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	220.81	215.19	140.59	226.71	199.67	217.83	235.53	247.61	128.03
Merged-chr3-107334025-3	chr3	107333522	107334522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045807)	promoter-TSS (NM_001045807)	-733.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	383.28	473.69	276.56	387.29	426.86	311.07	441.49	510.26	191.11
Merged-chr1-36710070-3	chr1	36709586	36710586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146107)	promoter-TSS (NM_146107)	-161.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	131.0	127.18	46.25	109.98	95.17	81.99	118.29	103.91	58.08
Merged-chr2-165402125-3	chr2	165401606	165402606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	113.27	78.33	45.32	96.48	78.84	127.0	58.09	40.24	44.97
Merged-chr8-88647225-3	chr8	88646693	88647693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-154.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	78.94	74.19	72.15	124.82	109.16	132.63	61.26	47.75	45.59
Merged-chr9-7870691-3	chr9	7870189	7871189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	ORR1C2|LTR|ERVL-MaLR	2481.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	156.74	159.89	139.67	136.97	115.23	98.06	185.89	214.89	91.81
Merged-chr16-76373805-3	chr16	76373318	76374318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	9.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	182.49	181.55	127.64	221.31	208.06	208.18	226.02	279.01	129.28
Merged-chr16-14358726-3	chr16	14358211	14359211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2847.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	20.59	25.34	21.27	25.64	21.93	27.33	24.29	28.74	24.36
Merged-chr7-13009924-3	chr7	13009418	13010418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024699)	promoter-TSS (NM_001024699)	-66.0	NM_001360833	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	50.34	52.07	84.17	43.18	43.39	84.4	66.54	54.39	68.7
Merged-chr12-69184637-3	chr12	69184129	69185129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025589)	promoter-TSS (NM_025589)	471.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	181.34	178.78	164.64	178.13	164.21	222.65	164.76	125.58	149.26
Merged-chr6-113307773-3	chr6	113307277	113308277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	640.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	298.04	340.98	317.26	241.55	267.31	292.58	237.64	328.97	259.18
Merged-chr8-104534557-3	chr8	104534049	104535049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301164)	promoter-TSS (NM_001301164)	88.0	NM_144931	234664.0	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	130.43	112.89	92.5	145.74	136.69	114.14	175.33	94.18	64.95
Merged-chr11-80209025-3	chr11	80208514	80209514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021536)	promoter-TSS (NM_021536)	-41.0	NM_001163354	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	104.11	105.98	78.62	110.65	88.17	107.71	106.67	61.02	68.7
Merged-chr5-59845923-3	chr5	59845422	59846422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140080.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	10.87	11.52	14.8	12.14	11.66	19.29	17.96	13.27	6.87
Merged-chr19-32215053-3	chr19	32214538	32215538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	-4025.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	41.19	29.95	20.35	65.45	48.05	40.19	19.01	8.84	16.86
Merged-chr2-66180057-3	chr2	66179565	66180565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55272.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	12.01	9.22	21.27	9.45	14.46	17.68	23.24	8.84	4.37
Merged-chrX-74246924-1	chrX	74246424	74247424	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010227)	promoter-TSS (NM_010227)	-390.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	46.91	44.7	49.02	45.21	38.25	44.21	34.85	43.33	28.73
Merged-chr15-8444988-1	chr15	8444488	8445488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-525.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	110.41	105.06	107.29	104.58	77.91	102.08	115.12	90.2	91.18
Merged-chr6-99784985-3	chr6	99784477	99785477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-58585.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	26.31	7.83	11.1	30.36	9.8	16.08	6.34	11.05	6.25
Merged-chr1-133610385-3	chr1	133609903	133610903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009227)	promoter-TSS (NM_009227)	-123.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	71.51	70.96	85.1	80.97	71.38	106.1	96.11	49.08	44.97
Merged-chr4-107879781-3	chr4	107879280	107880280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282737)	promoter-TSS (NM_001282737)	25.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	161.32	188.92	139.67	121.45	156.75	120.57	181.66	146.8	79.32
Merged-chr19-3322420-3	chr19	3321921	3322921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-880.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	129.28	100.45	137.82	75.57	72.78	115.75	153.15	168.91	111.79
Merged-chr13-58217788-3	chr13	58217294	58218294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2141.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	36.61	36.86	41.62	29.69	24.26	49.03	33.8	36.7	43.72
Merged-chr9-38820262-3	chr9	38819761	38820761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	4853.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	5.72	17.51	15.72	25.64	9.8	6.43	9.51	11.94	12.49
Merged-chr5-86078936-3	chr5	86078489	86079489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7243.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	52.06	47.46	22.2	32.39	22.39	26.53	53.87	48.2	23.73
Merged-chr9-77912083-3	chr9	77911600	77912600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5265.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	241.98	235.92	136.89	244.92	169.81	144.68	202.79	265.74	128.65
Merged-chr17-87025472-3	chr17	87024897	87025897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008838)	promoter-TSS (NM_008838)	4.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	101.25	92.16	101.74	114.03	80.24	118.96	154.2	158.3	59.33
Merged-chr4-11558882-3	chr4	11558395	11559395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256145)	promoter-TSS (NM_001256145)	-25.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	46.91	45.62	25.9	36.43	44.32	36.17	63.37	56.6	18.74
Merged-chr15-73612201-3	chr15	73611725	73612725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	5099.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	23.45	19.81	20.35	39.81	34.99	46.62	36.97	19.01	14.36
Merged-chr2-109904346-3	chr2	109903844	109904844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033473, intron 4 of 4)	intron (NR_033473, intron 4 of 4)	8975.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	4.0	8.29	7.4	6.07	3.73	3.22	2.11	3.1	3.12
Merged-chr11-73018934-3	chr11	73018431	73019431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018883)	promoter-TSS (NM_018883)	-77.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	21.74	22.58	6.47	34.41	32.66	32.96	27.46	20.78	14.99
Merged-chr17-53463358-3	chr17	53462856	53463856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172497)	promoter-TSS (NM_172497)	-35.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	25.74	16.59	7.4	18.89	11.2	9.65	14.79	10.17	15.61
Merged-chr15-6501047-3	chr15	6500570	6501570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55737.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	28.6	34.56	9.25	19.57	20.53	14.47	21.12	21.22	12.49
Merged-chr5-24030780-3	chr5	24030280	24031280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053090)	promoter-TSS (NM_053090)	-90.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	73.22	50.23	78.62	82.99	67.18	87.61	83.44	59.69	48.71
Merged-chr16-15594446-3	chr16	15593938	15594938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023585)	promoter-TSS (NM_023585)	80.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	159.6	121.65	110.07	161.26	127.36	134.23	167.93	86.22	83.69
Merged-chr19-46076330-1	chr19	46075830	46076830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039351, intron 1 of 12)	intron (NM_001039351, intron 1 of 12)	483.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	231.68	180.17	110.07	189.6	177.27	105.3	177.44	172.45	59.95
Merged-chr17-35235851-3	chr17	35235337	35236337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023179)	promoter-TSS (NM_023179)	-22.0	NM_010909	18038.0	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	137.86	104.6	96.2	130.22	69.04	118.16	172.16	124.69	121.16
Merged-chr11-64655349-3	chr11	64654850	64655850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218676.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	52.06	54.83	22.2	37.78	31.72	20.9	24.29	28.3	24.98
Merged-chr2-52938480-3	chr2	52937972	52938972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	80604.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	192.21	141.0	82.32	222.66	204.33	107.71	186.94	221.53	75.57
Merged-chr17-56291302-3	chr17	56290787	56291787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025836)	promoter-TSS (NM_025836)	-776.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	112.69	105.52	93.42	116.73	97.97	155.93	168.99	179.96	86.81
Merged-chr5-142443689-3	chr5	142443176	142444176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-20255.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	30.32	36.86	12.02	30.36	35.45	37.78	15.84	19.01	22.48
Merged-chr6-51544546-3	chr6	51544032	51545032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	9.0	NM_001127348	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	159.6	179.25	134.12	160.58	154.41	132.63	178.5	200.74	78.69
Merged-chr16-87440435-3	chr16	87439935	87440935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016924, intron 1 of 4)	CpG	157.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	194.5	186.16	179.44	158.56	167.01	179.24	220.74	198.09	89.93
Merged-chr11-95309727-3	chr11	95309215	95310215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	531.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	248.84	305.04	217.36	226.71	283.17	155.93	198.56	250.27	135.52
Merged-chr4-132883840-3	chr4	132883364	132884364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133887, intron 1 of 8)	intron (NM_133887, intron 1 of 8)	594.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	244.84	179.71	174.82	209.16	216.93	184.87	182.72	207.38	145.51
Merged-chr4-133369656-3	chr4	133369147	133370147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358455)	promoter-TSS (NM_001358455)	-88.0	NM_016981	20544.0	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	50.91	39.63	61.97	53.3	52.25	66.71	63.37	55.27	16.86
Merged-chr11-87127120-3	chr11	87126631	87127631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197987)	promoter-TSS (NM_197987)	56.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	93.82	59.9	60.12	120.1	115.23	87.61	97.17	103.47	53.71
Merged-chr12-80436711-3	chr12	80436277	80437277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177267)	promoter-TSS (NM_177267)	-176.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	98.97	72.8	61.97	94.46	60.18	96.45	96.11	59.69	41.84
Merged-chr2-121008390-3	chr2	121007888	121008888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010761)	promoter-TSS (NM_010761)	-20.0	NM_010761	17151.0	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	31.46	18.43	13.87	28.34	13.53	29.74	26.4	14.59	18.11
Merged-chr15-89211296-3	chr15	89210802	89211802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-257.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	136.72	182.01	104.52	116.73	151.62	123.78	179.55	175.54	114.29
Merged-chr7-142398165-3	chr7	142397652	142398652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10282.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	274.59	264.95	296.91	234.8	182.87	204.97	298.9	355.06	138.65
Merged-chr3-104864471-3	chr3	104863964	104864964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	41.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	367.26	351.12	286.74	326.56	328.42	329.55	334.81	337.37	248.56
Merged-chr12-25097333-3	chr12	25096832	25097832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	161.32	267.25	139.67	174.75	223.46	143.07	189.06	231.25	115.54
Merged-chr13-113487238-3	chr13	113486727	113487727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	15617.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	244.27	187.54	76.77	237.5	135.75	138.25	202.79	235.68	84.31
Merged-chr1-111864971-3	chr1	111864461	111865461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081316)	promoter-TSS (NM_001081316)	-43.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	19.45	26.73	24.05	33.06	29.86	25.72	29.57	17.24	16.86
Merged-chr3-57696450-3	chr3	57695978	57696978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3941.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	36.04	27.65	17.57	25.64	21.46	10.45	7.39	11.94	15.61
Merged-chr6-108828488-3	chr6	108828014	108829014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-127.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	191.64	199.52	132.27	163.96	157.21	131.02	191.17	220.64	113.04
Merged-chr2-32507306-3	chr2	32506814	32507814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28045.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	156.74	124.87	61.05	182.17	143.22	126.19	158.43	199.42	54.33
Merged-chr17-33629279-4	chr17	33628746	33629746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026712, intron 1 of 5)	CpG	154.0	NM_026712	328801.0	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	95.53	82.48	106.37	68.82	65.31	98.06	80.27	68.98	58.08
Merged-chr18-34758739-3	chr18	34758262	34759262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175104)	promoter-TSS (NM_175104)	-88.0	NM_175104	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	138.44	134.09	152.62	153.84	131.09	138.25	195.39	183.5	111.79
Merged-chr5-122372462-3	chr5	122371954	122372954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	-54.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	103.54	106.9	67.52	69.5	87.24	96.45	82.38	96.39	56.21
Merged-chr10-117717753-3	chr10	117717260	117718260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7002.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	156.17	150.68	65.67	177.45	132.49	130.21	160.54	191.02	81.19
Merged-chr12-84751444-3	chr12	84750946	84751946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	21666.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	277.45	321.63	184.07	295.53	306.5	219.43	340.09	382.92	155.51
Merged-chr17-50499580-3	chr17	50499066	50500066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9981.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	22.31	19.81	7.4	10.8	20.53	11.25	42.25	45.99	14.99
Merged-chr5-31362093-3	chr5	31361593	31362593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	64512.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	9.72	10.6	8.32	19.57	17.26	13.66	12.67	11.05	17.49
Merged-chr7-55853023-3	chr7	55852516	55853516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	10945.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	201.93	133.63	89.72	106.61	60.18	79.58	108.79	108.33	86.18
Merged-chr7-19466001-3	chr7	19465519	19466519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7525.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	132.14	151.14	94.35	194.99	167.01	130.21	211.24	274.14	121.16
Merged-chr7-144941662-3	chr7	144941162	144942162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1737.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	84.09	118.42	101.74	101.21	84.9	107.71	139.42	173.77	76.82
Merged-chr17-23564237-3	chr17	23563738	23564738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033496)	promoter-TSS (NM_001033496)	-12.0	NM_001033496	449521.0	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	115.55	94.92	89.72	114.7	111.96	130.21	117.24	153.43	72.45
Merged-chr2-60284317-3	chr2	60283821	60284821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290660, exon 1 of 6)	5' UTR (NM_001290660, exon 1 of 6)	163.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	212.8	233.16	186.84	188.92	194.53	201.75	217.57	219.76	168.0
Merged-chr1-149947170-3	chr1	149946660	149947660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14130.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	58.35	62.21	74.0	54.65	86.3	73.14	63.37	76.94	57.46
Merged-chr4-132795350-1	chr4	132794850	132795850	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1014.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	346.09	246.06	200.71	312.39	181.94	217.83	401.35	459.41	179.24
Merged-chr18-60596184-3	chr18	60595701	60596701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177340, exon 3 of 3)	exon (NM_177340, exon 3 of 3)	-4485.0	NM_133363	170947.0	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	7.44	3.69	5.55	8.77	5.13	6.43	9.51	2.65	2.5
Merged-chr10-24712084-3	chr10	24711552	24712552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008813, exon 1 of 25)	5' UTR (NM_008813, exon 1 of 25)	107.0	NM_001308327	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	95.53	74.65	86.02	128.2	129.22	102.08	99.28	92.86	47.46
Merged-chr12-32111762-3	chr12	32111289	32112289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50510.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	23.45	23.5	22.2	29.01	21.93	25.72	19.01	13.27	12.49
Merged-chr2-11192511-3	chr2	11192010	11193010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	20128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	253.99	301.81	113.77	184.87	208.53	183.26	234.47	359.48	148.01
Merged-chr1-92251076-3	chr1	92250566	92251566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-70725.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	9.15	3.69	1.85	3.37	2.33	3.22	5.28	0.88	4.37
Merged-chr7-19084649-3	chr7	19084145	19085145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	796.0	NM_001190491	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	178.48	235.92	160.94	190.95	187.07	249.98	330.59	352.41	229.83
Merged-chr11-117146301-3	chr11	117145797	117146797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 7 of 16)	intron (NM_001166507, intron 7 of 16)	31125.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	45.19	27.65	21.27	37.78	26.12	32.15	25.35	30.07	34.35
Merged-chr10-81015055-3	chr10	81014563	81015563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010319)	promoter-TSS (NM_010319)	-138.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	10.3	8.75	7.4	13.49	5.6	12.86	7.39	5.31	2.5
Merged-chr3-106547788-3	chr3	106547292	106548292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133869)	promoter-TSS (NM_133869)	-6.0	NM_001286986	67171.0	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	250.56	240.53	197.02	274.61	227.19	231.49	279.89	314.38	144.27
Merged-chr2-168207453-3	chr2	168206957	168207957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009628)	promoter-TSS (NM_009628)	-345.0	NM_001310088	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	394.14	356.65	291.36	332.64	287.84	237.92	372.83	299.35	196.1
Merged-chr11-20169175-3	chr11	20168661	20169661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32251.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	19.45	20.74	19.42	21.59	15.39	17.68	17.96	21.67	28.73
Merged-chr16-24620172-3	chr16	24619669	24620669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	90855.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	59.49	54.37	41.62	76.24	65.78	57.87	86.61	57.04	53.08
Merged-chr2-91526719-3	chr2	91526229	91527229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165989)	promoter-TSS (NM_001165989)	-33.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	110.41	80.18	51.8	109.3	74.17	45.82	105.62	85.34	44.34
Merged-chr4-19898219-3	chr4	19897734	19898734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	24332.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	53.77	81.56	57.35	62.75	58.31	57.07	59.15	66.77	35.6
Merged-chr10-80933837-3	chr10	80933352	80934352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3761.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	50.34	46.08	46.25	76.92	42.92	62.7	61.26	69.42	61.83
Merged-chr8-119412806-3	chr8	119412315	119413315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17923.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	18.88	13.82	30.52	21.59	8.4	24.11	22.18	7.96	14.36
Merged-chr2-167689032-3	chr2	167688512	167689512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	97.0	NM_001287738	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	359.25	118.88	119.32	292.83	85.84	152.72	173.21	63.67	84.94
Merged-chr14-50870513-3	chr14	50869999	50870999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	55.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	36.04	47.46	27.75	43.86	41.99	85.2	88.72	85.78	43.09
Merged-chr7-41499441-3	chr7	41498970	41499970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033530, exon 1 of 4)	5' UTR (NM_001033530, exon 1 of 4)	420.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	37.18	43.31	45.32	56.0	41.52	61.89	70.76	58.37	36.22
Merged-chr11-115514461-3	chr11	115513968	115514968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008258)	promoter-TSS (NM_008258)	-75.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	98.97	78.33	71.22	96.48	53.18	86.01	101.39	87.99	69.32
Merged-chr12-85824731-3	chr12	85824281	85825281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081423)	promoter-TSS (NM_001081423)	112.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	150.45	137.77	131.34	132.24	138.09	134.23	152.09	137.96	83.06
Merged-chr7-143038731-3	chr7	143038237	143039237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ERVL-B4-int|LTR|ERVL	-14013.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	151.59	130.86	114.69	131.57	74.64	119.76	128.85	140.61	101.17
Merged-chr7-74647557-3	chr7	74647051	74648051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92771.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.15	5.53	9.25	9.45	7.0	1.61	11.62	5.31	4.37
Merged-chr12-85648178-3	chr12	85647693	85648693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-38527.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	53.77	43.77	36.07	68.15	39.65	49.83	58.09	79.59	44.97
Merged-chr14-59440917-3	chr14	59440417	59441417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	-37.0	NM_001320721	239122.0	Mm.205022	NM_001081024	ENSMUSG00000071350	Setdb2	Clld8|Gm293|KMT1F	SET domain, bifurcated 2	protein-coding	192.21	213.34	169.27	162.61	185.2	163.17	207.01	205.61	132.4
Merged-chr15-83122806-3	chr15	83122305	83123305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029101)	promoter-TSS (NM_029101)	-4.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	81.8	82.48	108.22	87.71	68.11	76.36	73.93	77.38	45.59
Merged-chr1-178369069-3	chr1	178368570	178369570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31255.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	233.97	227.63	143.37	242.22	203.86	204.16	194.34	226.39	120.53
Merged-chr16-75872426-3	chr16	75871917	75872917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 6 of 7)	intron (NM_023380, intron 6 of 7)	36849.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	76.08	58.06	27.75	47.9	18.66	14.47	50.7	47.75	31.85
Merged-chr12-37241309-3	chr12	37240802	37241802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178767)	promoter-TSS (NM_178767)	-337.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	166.47	186.62	72.15	201.74	194.53	143.88	175.33	234.79	131.15
Merged-chr3-103859650-3	chr3	103859149	103860149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-146.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	189.35	202.28	131.34	188.25	144.15	138.25	184.83	236.12	146.14
Merged-chr7-12881093-3	chr7	12880599	12881599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153802)	promoter-TSS (NM_153802)	-79.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	17.73	26.73	24.05	21.59	32.66	31.35	24.29	20.78	16.86
Merged-chrX-100508379-3	chrX	100507867	100508867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008784, intron 5 of 5)	intron (NM_008784, intron 5 of 5)	14076.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	56.63	48.84	24.97	62.07	50.85	36.17	45.42	60.58	31.23
Merged-chr8-41016370-3	chr8	41015892	41016892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 6 of 13)	intron (NM_001005863, intron 6 of 13)	-1076.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	49.77	68.2	44.4	55.33	59.71	59.48	106.67	109.66	50.59
Merged-chr12-83860904-3	chr12	83860391	83861391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 2 of 12)	MTEa|LTR|ERVL-MaLR	15921.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	48.62	66.35	54.57	39.13	47.58	68.32	67.6	75.61	49.34
Merged-chrX-19167278-3	chrX	19166775	19167775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20304.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	89.81	123.03	90.65	97.83	103.1	81.18	105.62	108.77	64.33
Merged-chr5-64794147-3	chr5	64793654	64794654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9369.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	49.2	42.39	33.3	62.75	37.32	35.37	50.7	26.97	31.23
Merged-chr13-98957918-1	chr13	98957418	98958418	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26647.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	6.86	2.3	14.8	3.37	4.67	1.61	80.27	91.97	36.22
Merged-chr13-117211554-3	chr13	117211055	117212055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9018.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	24.6	16.59	0.0	13.49	9.33	16.08	12.67	8.84	10.62
Merged-chr1-71103087-3	chr1	71102588	71103588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-116.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	52.06	87.55	47.17	60.05	80.24	49.83	117.24	127.79	31.85
Merged-chr6-113630475-3	chr6	113629969	113630969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009507, exon 3 of 3)	3' UTR (NM_009507, exon 3 of 3)	6448.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	70.93	79.25	48.1	75.57	62.51	70.73	68.65	86.66	46.22
Merged-chr4-114909020-3	chr4	114908535	114909535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008593)	promoter-TSS (NM_008593)	-137.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	10.3	8.29	11.1	11.47	6.53	6.43	20.07	11.94	14.36
Merged-chr12-40656103-3	chr12	40655595	40656595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210042.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	60.64	105.06	58.27	62.07	51.78	77.97	109.84	103.91	60.58
Merged-chr17-44053610-3	chr17	44053112	44054112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25190.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	33.18	23.96	14.8	8.1	5.6	8.04	12.67	7.07	3.75
Merged-chr8-75152828-3	chr8	75152309	75153309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43300.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	82.38	70.96	53.65	39.13	41.05	56.27	82.38	75.61	51.84
Merged-chrX-76599051-3	chrX	76598531	76599531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201395, intron 1 of 1)	SYNREP_MM|Satellite|Satellite	3893.0	NM_001201395	74987.0	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	17.73	48.84	19.42	20.92	61.11	26.53	34.85	42.89	23.73
Merged-chr8-122551464-3	chr8	122551019	122552019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357349)	promoter-TSS (NM_001357349)	-190.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	151.59	109.67	112.84	165.98	141.35	153.52	180.61	130.0	95.55
Merged-chr6-29523589-3	chr6	29523100	29524100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	604.66	536.81	413.45	552.59	401.66	368.94	442.54	609.31	266.05
Merged-chr9-63706513-3	chr9	63706000	63707000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	51494.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	49.77	25.34	9.25	21.59	11.66	8.04	24.29	14.59	13.12
Merged-chr6-72120093-3	chr6	72119610	72120610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045163)	TTS (NR_045163)	2830.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	81.23	64.51	47.17	92.44	58.78	53.05	78.16	90.64	44.97
Merged-chr4-88438916-3	chr4	88438412	88439412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025760)	promoter-TSS (NM_025760)	14.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	69.79	82.94	94.35	104.58	94.7	129.41	155.26	192.78	70.57
Merged-chr3-41374782-1	chr3	41374282	41375282	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118417.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.15	5.99	0.0	8.77	6.06	5.63	7.39	3.98	3.75
Merged-chr2-127270711-3	chr2	127270228	127271228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139308, exon 1 of 8)	exon (NM_139308, exon 1 of 8)	499.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	327.21	262.19	256.21	372.44	387.2	274.9	322.14	309.52	184.86
Merged-chr6-125166597-3	chr6	125166092	125167092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	-125.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	181.34	127.18	133.19	142.37	94.23	165.58	180.61	198.09	124.91
Merged-chr5-117120025-3	chr5	117119504	117120504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199685)	promoter-TSS (NM_001199685)	-125.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	79.52	64.97	74.92	92.44	73.71	94.85	84.49	92.86	63.7
Merged-chr12-35047937-3	chr12	35047437	35048437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	748.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	340.94	384.75	322.81	353.55	239.79	223.45	341.15	309.96	241.07
Merged-chrX-59817531-2	chrX	59817034	59818034	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181930.0	NM_007979	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	18.31	17.97	12.95	25.64	24.26	22.51	22.18	16.36	32.48
Merged-chr15-25302009-3	chr15	25301513	25302513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	111751.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	137.29	123.49	82.32	160.58	181.47	87.61	149.98	178.19	81.19
Merged-chr10-121369062-3	chr10	121368555	121369555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	3965.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	64.07	56.22	26.82	78.94	65.31	57.07	82.38	80.47	46.84
Merged-chr1-181214495-1	chr1	181213995	181214995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2517.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	75.51	63.13	70.3	7.42	5.6	4.82	6.34	11.05	5.0
Merged-chr17-28007333-3	chr17	28006825	28007825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 11 of 24)	intron (NM_181413, intron 11 of 24)	73259.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	46.34	26.26	44.4	59.38	29.39	45.82	33.8	24.32	18.74
Merged-chr17-70851864-3	chr17	70851369	70852369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-135.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	428.47	423.92	267.31	466.9	408.19	303.83	351.71	466.49	164.88
Merged-chr13-9180452-3	chr13	9179935	9180935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	86554.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	52.63	30.41	14.8	36.43	41.05	20.9	59.15	45.1	10.62
Merged-chr11-87109022-3	chr11	87108480	87109480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175563)	promoter-TSS (NM_175563)	-266.0	NM_175563	270906.0	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	40.62	42.39	25.9	33.06	27.52	32.15	40.14	35.82	18.74
Merged-chr9-46283022-3	chr9	46282520	46283520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146000)	promoter-TSS (NM_146000)	8.0	NM_146000	215051.0	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	93.82	117.96	77.7	79.62	73.24	106.1	97.17	112.31	86.18
Merged-chr19-3851771-3	chr19	3851267	3852267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-6.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	313.49	248.82	206.26	312.39	273.84	160.76	264.05	286.52	133.02
Merged-chr18-34932067-3	chr18	34931571	34932571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144866)	promoter-TSS (NM_144866)	-68.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	460.5	374.62	300.61	409.55	339.62	294.19	348.54	366.56	228.58
Merged-chr4-46650203-3	chr4	46649719	46650719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198664)	promoter-TSS (NM_198664)	-20.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	57.78	46.54	79.55	42.51	91.44	77.16	73.93	45.54	40.59
Merged-chr3-108383713-3	chr3	108383221	108384221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040560)	promoter-TSS (NR_040560)	20.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	9.15	13.82	18.5	18.22	12.13	8.04	14.79	9.29	13.74
Merged-chr4-136021795-3	chr4	136021310	136022310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013736)	promoter-TSS (NM_013736)	-161.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	224.82	165.88	163.72	216.58	137.62	117.35	196.45	138.4	105.55
Merged-chr18-46404857-3	chr18	46404373	46405373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60943.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	298.04	257.12	144.29	317.79	262.64	203.36	318.97	335.16	154.26
Merged-chr15-53414999-3	chr15	53414478	53415478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-68795.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	129.28	155.28	89.72	124.82	90.5	128.61	106.67	144.59	72.45
Merged-chr1-66816133-3	chr1	66815619	66816619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	MIR|SINE|MIR	1476.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	284.88	391.21	205.34	406.18	445.05	295.79	418.25	542.98	274.79
Merged-chr2-4919012-3	chr2	4918503	4919503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	7.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	104.69	131.78	89.72	250.32	273.37	241.14	176.38	187.04	79.32
Merged-chr1-134458330-3	chr1	134457832	134458832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311136, intron 1 of 11)	intron (NM_001311136, intron 1 of 11)	2801.0	NM_001311136	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	13.16	10.6	10.17	7.42	6.53	10.45	7.39	3.54	8.74
Merged-chr5-86172858-3	chr5	86172346	86173346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172712)	promoter-TSS (NM_172712)	-103.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	176.76	195.37	147.99	172.05	165.61	119.76	156.32	161.39	91.81
Merged-chr6-34608791-3	chr6	34608286	34609286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	10282.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	23.45	23.04	12.95	31.04	20.99	44.21	46.47	40.24	14.36
Merged-chr1-132155953-3	chr1	132155459	132156459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16274.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	2.29	4.15	1.85	5.4	3.27	2.41	1.06	0.88	3.75
Merged-chr8-122870540-3	chr8	122870050	122871050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22176.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	9.15	6.91	13.87	16.87	13.06	16.08	29.57	22.99	11.24
Merged-chr11-101468102-3	chr11	101467602	101468602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009708)	promoter-TSS (NM_009708)	-73.0	NM_009708	11858.0	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn|rho7	Rho family GTPase 2	protein-coding	123.56	68.2	21.27	112.68	82.11	61.89	59.15	53.5	26.23
Merged-chrX-85870264-4	chrX	85869823	85870823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163539)	promoter-TSS (NM_001163539)	50.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	149.88	138.24	52.72	129.55	129.69	80.38	114.07	168.47	55.58
Merged-chr15-98683369-3	chr15	98682873	98683873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5912.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	29.17	23.5	21.27	23.62	11.2	16.88	31.69	19.9	13.74
Merged-chr9-95540660-3	chr9	95540178	95541178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19139.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	8.58	2.76	7.4	14.17	5.6	7.23	16.9	16.36	7.49
Merged-chr2-157069652-3	chr2	157069158	157070158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	9607.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	97.82	57.14	77.7	89.06	56.91	87.61	66.54	65.88	46.84
Merged-chr8-84662357-2	chr8	84661846	84662846	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010499, exon 1 of 1)	exon (NM_010499, exon 1 of 1)	506.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	396.43	341.44	292.29	371.77	334.02	349.65	367.55	474.89	216.09
Merged-chr9-53633634-3	chr9	53633135	53634135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161618, intron 9 of 17)	intron (NM_001161618, intron 9 of 17)	-23285.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	125.28	179.25	72.15	123.47	115.69	94.85	142.59	173.77	89.31
Merged-chrX-96256732-3	chrX	96256233	96257233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177789, intron 4 of 6)	B4A|SINE|B4	13916.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	18.31	8.75	5.55	9.45	9.33	19.29	8.45	16.36	12.49
Merged-chr6-108213059-3	chr6	108212566	108213566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-30.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	58.92	46.08	44.4	54.65	44.78	55.46	86.61	72.96	41.22
Merged-chr3-79237830-3	chr3	79237343	79238343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	24924.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	105.83	126.25	103.59	80.29	55.05	86.81	153.15	174.66	110.54
Merged-chr2-122118420-3	chr2	122117922	122118922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145531)	promoter-TSS (NM_145531)	-36.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	270.58	286.61	229.39	249.65	299.03	222.65	283.06	321.9	181.74
Merged-chr2-45279658-3	chr2	45279171	45280171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162229.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	105.83	95.84	58.27	109.98	71.84	69.13	101.39	72.52	37.47
Merged-chr12-31351430-3	chr12	31350910	31351910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007861)	promoter-TSS (NM_007861)	61.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	135.58	153.9	140.59	118.75	145.55	139.06	176.38	131.32	94.93
Merged-chr8-121906648-3	chr8	121906151	121907151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	1035.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	14.3	9.68	9.25	7.42	6.53	4.82	7.39	11.94	5.0
Merged-chr8-75083998-3	chr8	75083500	75084500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9618.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	152.74	105.06	98.97	165.98	80.71	133.43	128.85	87.99	63.7
Merged-chr10-88346092-3	chr10	88345585	88346585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	10990.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	71.51	67.74	75.85	74.22	52.72	112.53	99.28	107.0	55.58
Merged-chr13-113741975-1	chr13	113741475	113742475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-52533.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	21.17	16.13	13.87	1.35	1.4	3.22	3.17	1.77	1.25
Merged-chr6-99666775-3	chr6	99666265	99667265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	6.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	104.69	79.25	124.87	72.87	44.78	79.58	80.27	62.35	34.97
Merged-chr11-19924343-3	chr11	19923821	19924821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033523)	promoter-TSS (NM_033523)	-121.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	371.83	342.36	269.16	303.62	254.25	218.63	265.1	263.97	134.27
Merged-chr7-127967329-3	chr7	127966863	127967863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347649)	promoter-TSS (NM_001347649)	-116.0	NM_001347649	233908.0	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	541.16	414.71	271.94	476.35	327.96	279.72	346.43	321.01	241.69
Merged-chr15-19857455-2	chr15	19856962	19857962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	672089.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	84.09	99.53	38.85	0.0	3.27	0.0	88.72	81.8	54.33
Merged-chr9-123058886-3	chr9	123058377	123059377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177911, intron 10 of 13)	L1M4|LINE|L1	24136.0	NM_177911	331046.0	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	7.44	14.75	12.95	7.42	3.73	9.65	11.62	7.96	2.5
Merged-chr5-114654196-3	chr5	114653704	114654704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	4217.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	102.4	122.11	115.62	105.93	90.5	158.35	83.44	63.67	52.46
Merged-chr10-80901014-3	chr10	80900539	80901539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-70.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	64.64	49.76	76.77	62.07	55.05	57.07	67.6	49.52	47.46
Merged-chr5-75933630-3	chr5	75933119	75934119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010612, exon 30 of 30)	3' UTR (NM_010612, exon 30 of 30)	44809.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	22.88	29.95	12.02	22.27	21.46	22.51	21.12	22.55	15.61
Merged-chr16-44063353-3	chr16	44062837	44063837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21329.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	27.46	21.66	7.4	14.84	19.59	4.82	34.85	22.55	16.24
Merged-chr10-88826815-3	chr10	88826303	88827303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175158)	promoter-TSS (NM_175158)	11.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	36.04	31.33	26.82	45.88	38.25	74.75	48.58	36.26	23.11
Merged-chr8-69903309-3	chr8	69902815	69903815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-757.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	214.52	194.45	123.02	199.72	182.4	177.64	202.79	216.22	141.77
Merged-chr7-118484214-3	chr7	118483708	118484708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033380)	TTS (NM_001033380)	7767.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	204.22	187.08	120.24	170.03	147.88	128.61	179.55	185.27	98.68
Merged-chr2-128392577-3	chr2	128392087	128393087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36764.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	227.68	206.43	68.45	219.96	215.06	109.32	218.63	278.12	111.79
Merged-chr7-101896319-3	chr7	101895838	101896838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027532)	promoter-TSS (NM_027532)	7.0	NM_001291349	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	177.34	108.28	167.42	142.37	94.23	139.86	170.05	168.47	111.17
Merged-chr4-108833639-3	chr4	108833139	108834139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027453)	promoter-TSS (NM_027453)	1.0	NM_027453	70533.0	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	320.35	242.83	258.99	244.25	211.79	252.39	273.55	217.55	138.65
Merged-chr2-102867945-3	chr2	102867456	102868456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	33709.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	28.6	23.04	23.12	41.83	23.33	16.88	29.57	29.63	24.36
Merged-chr2-152332585-3	chr2	152332060	152333060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083921)	promoter-TSS (NM_001083921)	79.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	240.26	261.26	205.34	213.21	243.98	230.69	252.43	256.46	140.52
Merged-chr5-124541282-3	chr5	124540787	124541787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019770, intron 1 of 3)	CpG	496.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	227.11	161.74	214.59	211.19	157.68	160.76	184.83	110.98	133.02
Merged-chr17-27635343-3	chr17	27634851	27635851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025963)	promoter-TSS (NM_025963)	-109.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	49.2	43.77	49.02	65.45	53.65	74.75	79.21	65.0	39.97
Merged-chr4-118144519-3	chr4	118144014	118145014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 16 of 21)	intron (NM_001161823, intron 16 of 21)	-9568.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	110.98	117.96	123.02	139.67	100.77	117.35	145.75	108.77	79.94
Merged-chr7-102025449-3	chr7	102024944	102025944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-7289.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	255.14	220.25	141.52	242.22	135.29	119.76	179.55	242.75	113.04
Merged-chr11-74493345-3	chr11	74492846	74493846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	96812.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	168.18	178.32	95.27	137.64	125.02	126.19	189.06	218.43	112.42
Merged-chr5-28071962-3	chr5	28071472	28072472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	560.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	215.66	176.94	184.07	242.22	245.85	237.12	246.09	248.06	131.78
Merged-chr8-111732185-3	chr8	111731685	111732685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198839)	promoter-TSS (NM_001198839)	-49.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	12.01	6.45	3.7	7.42	5.13	2.41	3.17	4.42	1.87
Merged-chr4-8535614-3	chr4	8535132	8536132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021518)	promoter-TSS (NM_021518)	-12.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	161.89	149.29	147.99	203.09	125.02	135.04	197.51	95.95	117.41
Merged-chr12-95747108-3	chr12	95746689	95747689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	54963.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	27.46	35.48	19.42	41.83	34.99	44.21	60.2	60.13	38.72
Merged-chr10-41519312-4	chr10	41518825	41519825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-175.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	437.05	336.83	270.09	431.82	342.88	265.25	402.41	374.07	259.8
Merged-chr7-31089914-1	chr7	31089414	31090414	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13217.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	11.44	5.53	1.85	21.59	12.6	20.9	7.39	1.77	2.5
Merged-chr9-107576924-3	chr9	107576427	107577427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331161)	promoter-TSS (NM_001331161)	0.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	8.58	12.44	4.62	6.07	8.86	9.65	21.12	6.19	4.37
Merged-chr19-29648438-3	chr19	29647937	29648937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081213)	promoter-TSS (NM_001081213)	-22.0	NM_001362131	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	53.2	43.31	56.42	60.72	39.19	82.79	67.6	49.08	33.1
Merged-chr8-4322661-3	chr8	4322155	4323155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010485, intron 1 of 5)	intron (NM_010485, intron 1 of 5)	2445.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	21.17	20.74	10.17	10.8	9.8	18.49	19.01	7.07	16.24
Merged-chr15-5539570-3	chr15	5539117	5540117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	43299.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	44.05	35.94	18.5	58.03	41.99	32.96	38.02	24.76	14.99
Merged-chr8-116975228-3	chr8	116974745	116975745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	3408.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	59.49	88.93	84.17	82.32	73.24	90.83	70.76	88.43	44.34
Merged-chr12-69198022-7	chr12	69197490	69198490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	439.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	171.62	191.69	211.81	177.45	184.74	163.97	162.65	141.94	122.41
Merged-chr8-108317710-3	chr8	108317215	108318215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	266962.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	31.46	44.7	42.55	48.58	40.12	34.56	26.4	42.89	36.22
Merged-chr3-65974850-3	chr3	65974337	65975337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16588.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	344.38	380.15	203.49	280.01	363.88	254.8	298.9	397.95	191.11
Merged-chr2-12923983-3	chr2	12923477	12924477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305436)	promoter-TSS (NM_001305436)	-64.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	32.61	33.64	39.77	37.78	26.12	24.92	46.47	40.24	20.61
Merged-chr18-53264283-3	chr18	53263783	53264783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	18621.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	259.14	229.93	170.19	327.24	246.78	221.04	277.78	256.9	143.02
Merged-chr17-67350597-3	chr17	67350059	67351059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	3900.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	278.59	360.33	134.12	328.59	368.08	222.65	314.74	467.81	172.37
Merged-chr7-19345068-1	chr7	19344568	19345568	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007948)	promoter-TSS (NM_007948)	-3.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	20.59	17.05	3.7	17.54	7.46	10.45	31.69	19.01	14.99
Merged-chr14-45658212-3	chr14	45657712	45658712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-69.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	259.71	291.68	198.87	286.08	210.86	241.94	316.86	266.18	153.01
Merged-chr8-85142745-3	chr8	85142246	85143246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9178.0	NM_001037922	624855.0	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	14.87	18.89	7.4	76.92	51.32	53.85	47.53	42.45	44.97
Merged-chr6-65115058-3	chr6	65114551	65115551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355250, exon 24 of 24)	3' UTR (NM_001355250, exon 24 of 24)	29679.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	44.62	50.69	33.3	32.39	46.65	40.19	31.69	32.72	28.1
Merged-chr10-125749215-3	chr10	125748720	125749720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-216999.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	18.88	18.89	12.95	25.64	19.59	13.66	20.07	19.01	14.36
Merged-chr16-4679801-3	chr16	4679291	4680291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030205)	promoter-TSS (NM_030205)	-71.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	171.62	164.04	149.84	182.85	174.47	146.29	203.84	309.07	104.92
Merged-chr6-83795775-3	chr6	83795271	83796271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164187, intron 1 of 9)	intron (NM_001164187, intron 1 of 9)	613.0	NM_001164187	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	200.22	182.47	161.87	242.22	204.8	223.45	174.27	218.87	103.05
Merged-chr9-52048782-1	chr9	52048282	52049282	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_023357)	promoter-TSS (NR_023357)	-77.0	NR_023357	629557.0	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	118.99	111.97	94.35	106.61	82.57	106.1	113.01	62.35	51.84
Merged-chr8-9976426-3	chr8	9975920	9976920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176953)	promoter-TSS (NM_176953)	-97.0	NM_176953	319583.0	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	16.59	15.21	8.32	10.8	14.0	15.27	30.63	19.01	9.99
Merged-chr6-146578246-2	chr6	146577728	146578728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	317.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	264.29	286.61	231.24	256.39	310.69	245.96	249.26	319.24	187.98
Merged-chr9-118669919-3	chr9	118669430	118670430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 9 of 27)	MER2|DNA|TcMar-Tigger	-41762.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	139.01	110.59	92.5	157.88	96.1	114.94	113.01	125.13	78.07
Merged-chr11-61533848-3	chr11	61533348	61534348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252188, intron 5 of 10)	intron (NM_001252188, intron 5 of 10)	28704.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	45.76	33.64	28.67	50.6	20.99	58.68	25.35	19.9	24.36
Merged-chr9-63377839-3	chr9	63377344	63378344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011840)	promoter-TSS (NM_011840)	8.0	NM_011840	23938.0	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	86.95	71.42	68.45	73.54	83.97	80.38	127.8	94.62	54.96
Merged-chr5-92504822-1	chr5	92504322	92505322	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	835.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	394.72	296.75	284.89	392.69	300.9	322.32	330.59	258.67	231.7
Merged-chr10-122754085-3	chr10	122753580	122754580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74765.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	127.57	96.76	55.5	148.44	78.84	73.95	128.85	131.32	45.59
Merged-chr2-118260003-3	chr2	118259520	118260520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3054.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	48.62	27.19	5.55	24.96	15.86	9.65	25.35	17.69	10.62
Merged-chr16-4003816-3	chr16	4003313	4004313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2135.0	NM_177472	52864.0	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	110.98	108.75	78.62	97.16	83.51	65.11	109.84	96.39	75.57
Merged-chr3-94456660-3	chr3	94456161	94457161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13325.0	NM_030116	78523.0	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	2.29	2.3	1.85	0.67	2.33	0.0	4.22	3.1	1.25
Merged-chr18-6491114-1	chr18	6490614	6491614	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	-257.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	231.68	257.12	193.32	160.58	232.32	207.38	199.62	183.06	143.64
Merged-chr14-70766778-3	chr14	70766324	70767324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-196.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	62.35	47.92	39.77	62.07	44.78	71.54	109.84	66.33	46.22
Merged-chr2-90509444-3	chr2	90508927	90509927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-30253.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	104.11	81.56	38.85	132.92	119.89	65.11	138.36	145.47	58.08
Merged-chr4-132564147-3	chr4	132563657	132564657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	90.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	97.82	49.76	28.67	131.57	71.84	57.87	60.2	49.96	20.61
Merged-chr9-71187592-3	chr9	71187103	71188103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	18827.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	9.15	9.22	5.55	7.42	3.27	1.61	4.22	10.17	3.75
Merged-chr18-78142222-3	chr18	78141715	78142715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-96.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	175.62	235.0	189.62	228.73	235.59	209.79	271.44	343.12	162.38
Merged-chrX-19276314-1	chrX	19275814	19276814	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-129343.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	4.0	2.76	1.85	2.7	0.93	1.61	2.11	1.77	5.0
Merged-chr11-51858864-3	chr11	51858340	51859340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1210.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	184.2	189.84	220.14	188.92	160.01	225.86	181.66	218.43	132.4
Merged-chr8-19958087-1	chr8	19957587	19958587	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	RMER16_Mm|LTR|ERVK	228511.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	2.29	5.53	14.8	6.75	6.06	8.04	2.11	5.31	5.0
Merged-chr18-12738545-3	chr18	12738065	12739065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2790.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	73.79	81.1	84.17	53.98	53.65	74.75	122.52	114.52	92.43
Merged-chr1-57970099-3	chr1	57969616	57970616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	-32.0	NM_001159865	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	52.63	58.98	38.85	77.59	59.25	53.05	53.87	50.41	29.98
Merged-chr7-92875182-3	chr7	92874677	92875677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-76.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	459.93	344.21	265.46	425.75	297.17	298.21	350.65	355.94	199.22
Merged-chr3-135825297-1	chr3	135824797	135825797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	18.0	NM_026228	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	44.05	39.63	29.6	58.7	65.31	69.13	59.15	45.99	24.98
Merged-chr1-191907627-3	chr1	191907123	191908123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030669)	promoter-TSS (NR_030669)	-96.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	66.93	62.67	76.77	89.06	60.65	95.65	90.83	61.02	52.46
Merged-chr5-137294531-3	chr5	137294023	137295023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027356)	promoter-TSS (NM_027356)	-146.0	NM_027356	70240.0	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	108.12	103.22	110.99	91.76	84.9	128.61	88.72	100.81	86.81
Merged-chr19-60659109-2	chr19	60658624	60659624	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-78101.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.0	4.15	5.55	12.14	15.39	8.04	27.46	18.57	14.36
Merged-chr10-81129531-3	chr10	81129037	81130037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6734.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	156.17	130.4	95.27	149.11	108.23	112.53	132.02	156.97	101.17
Merged-chr1-72107289-2	chr1	72106787	72107787	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102092.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	15.45	7.37	1.85	153.16	135.75	77.16	165.82	167.58	86.18
Merged-chr13-64152436-3	chr13	64151948	64152948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361047)	promoter-TSS (NM_001361047)	-75.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	198.5	193.07	125.79	203.76	188.47	143.88	238.7	293.16	126.15
Merged-chr2-19657685-3	chr2	19657187	19658187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027715)	promoter-TSS (NM_027715)	210.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	257.42	237.76	188.69	244.25	182.87	182.46	202.79	130.0	115.54
Merged-chr15-8443687-3	chr15	8443178	8444178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	CpG	785.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	279.73	323.93	258.99	218.61	241.65	180.05	258.77	233.91	202.97
Merged-chr13-67268735-2	chr13	67268246	67269246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_155551, exon 1 of 6)	non-coding (NR_155551, exon 1 of 6)	248.0	NR_155551	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	145.3	158.05	130.42	122.8	141.35	113.33	106.67	95.51	56.21
Merged-chr13-107857199-3	chr13	107856685	107857685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	32879.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	117.84	108.75	57.35	95.81	66.71	40.19	138.36	211.36	71.82
Merged-chr16-76607431-3	chr16	76606927	76607927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58632.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	26.89	14.28	14.8	20.92	20.53	9.65	15.84	17.24	11.24
Merged-chr12-102002315-2	chr12	102001811	102002811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016856, intron 13 of 14)	intron (NM_016856, intron 13 of 14)	26337.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	18.88	18.43	12.02	2.02	3.27	3.22	15.84	10.61	8.12
Merged-chr1-54903070-3	chr1	54902564	54903564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	RMER19B|LTR|ERVK	23323.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	44.05	40.55	16.65	56.68	43.85	56.27	30.63	31.39	33.72
Merged-chr8-25040599-3	chr8	25040090	25041090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_031257, exon 12 of 12)	3' UTR (NM_031257, exon 12 of 12)	-1628.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	45.76	53.45	31.45	47.23	40.12	50.64	49.64	78.71	37.47
Merged-chr13-113949936-3	chr13	113949415	113950415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 3 of 4)	intron (NM_172595, intron 3 of 4)	155407.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	76.66	78.79	53.65	108.63	110.1	94.85	132.02	144.59	69.32
Merged-chr2-21183008-3	chr2	21182504	21183504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	22361.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	92.67	102.29	53.65	60.05	55.05	60.28	40.14	40.24	45.59
Merged-chr11-20806871-2	chr11	20806385	20807385	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	24223.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	12.01	7.37	1.85	4.72	5.6	11.25	3.17	4.86	12.49
Merged-chr12-51845115-3	chr12	51844572	51845572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15536.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	126.42	141.92	86.95	158.56	192.2	106.9	120.41	120.27	39.35
Merged-chr17-27911487-3	chr17	27910983	27911983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	2177.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	409.02	402.26	234.94	294.18	234.65	245.96	269.33	379.82	172.37
Merged-chr7-25279479-3	chr7	25279003	25280003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	intron (NM_001302811, intron 2 of 20)	-2676.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	211.09	150.22	151.69	221.98	162.81	150.31	201.73	155.64	100.55
Merged-chr7-51861774-3	chr7	51861287	51862287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330608)	promoter-TSS (NM_001330608)	-228.0	NM_001330608	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	82.38	70.5	80.47	90.41	66.71	102.08	114.07	60.58	59.33
Merged-chr18-69290129-2	chr18	69289629	69290629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54363.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	10.87	12.9	6.47	8.77	9.33	11.25	2.11	3.1	6.25
Merged-chr11-60728408-3	chr11	60727912	60728912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039559)	promoter-TSS (NR_039559)	14.0	NM_001009927	237781.0	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	75.51	109.67	80.47	107.95	109.63	125.39	109.84	143.26	81.81
Merged-chr3-53463262-3	chr3	53462759	53463759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-1.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	383.28	436.36	299.68	379.19	427.79	322.32	414.02	447.47	237.32
Merged-chr5-113649007-3	chr5	113648508	113649508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	1382.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	240.83	243.29	188.69	280.68	227.19	208.98	276.72	318.36	136.77
Merged-chr7-31151639-3	chr7	31151148	31152148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360351)	promoter-TSS (NM_001360351)	-477.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	321.49	302.27	283.04	253.02	250.98	311.87	295.73	312.17	228.58
Merged-chr2-130642878-3	chr2	130642386	130643386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197945)	promoter-TSS (NM_197945)	-42.0	NM_001291027	241638.0	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	57.78	25.34	13.87	46.56	21.93	25.72	26.4	18.13	11.87
Merged-chr11-104442327-3	chr11	104441864	104442864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081045)	promoter-TSS (NM_001081045)	-73.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	387.28	340.52	317.26	298.23	288.3	311.07	325.31	281.22	236.7
Merged-chr10-22058701-3	chr10	22058207	22059207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9372.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	2.29	1.84	3.7	8.1	1.4	3.22	22.18	15.92	13.74
Merged-chr5-100566978-3	chr5	100566467	100567467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	5238.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	63.5	54.37	60.12	73.54	26.59	37.78	137.3	106.56	52.46
Merged-chr8-68926674-3	chr8	68926161	68927161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46106.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	47.48	51.61	61.97	76.92	31.72	46.62	67.6	60.13	39.97
Merged-chr10-121374372-3	chr10	121373871	121374871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029364, exon 3 of 14)	exon (NM_029364, exon 3 of 14)	9281.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	201.93	171.87	131.34	212.54	148.82	144.68	172.16	175.98	102.42
Merged-chr11-51263029-3	chr11	51262532	51263532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	25.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	445.63	558.93	339.46	446.66	574.27	370.55	402.41	456.76	237.95
Merged-chr3-54807766-3	chr3	54807306	54808306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133231)	promoter-TSS (NM_133231)	-15.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	144.73	119.8	139.67	120.1	116.63	116.55	110.9	87.11	68.7
Merged-chr4-133546043-3	chr4	133545519	133546519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	8.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	125.85	117.04	129.49	126.85	99.37	110.92	114.07	103.47	48.09
Merged-chr18-68300328-3	chr18	68299846	68300846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026440)	promoter-TSS (NM_026440)	-9.0	NM_026440	67897.0	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	267.72	282.0	202.56	348.15	296.7	258.02	362.27	386.01	166.75
Merged-chr16-38769773-3	chr16	38769253	38770253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285793)	TTS (NM_001285793)	27494.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	73.22	58.06	90.65	57.35	39.19	55.46	104.56	101.7	53.71
Merged-chr4-150227357-3	chr4	150226839	150227839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-9858.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	23.45	18.89	31.45	24.29	17.73	24.92	27.46	22.99	16.24
Merged-chr6-120179865-3	chr6	120179376	120180376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-13947.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	134.43	98.61	77.7	163.96	113.83	151.11	180.61	161.83	100.55
Merged-chr14-73380492-3	chr14	73379993	73380993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	4796.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	93.24	105.52	42.55	95.81	73.24	53.85	117.24	97.72	34.35
Merged-chr13-23453558-3	chr13	23453056	23454056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12345.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	32.61	38.25	35.15	28.34	19.59	39.39	44.36	39.35	31.23
Merged-chr10-42269563-3	chr10	42269066	42270066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7176.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	98.39	110.13	96.2	143.04	111.03	115.75	158.43	176.87	67.45
Merged-chr12-119114001-3	chr12	119113510	119114510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124266.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	7.44	8.29	0.92	11.47	5.13	4.82	10.56	12.38	3.75
Merged-chr18-21001750-3	chr18	21001240	21002240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303011)	promoter-TSS (NM_001303011)	-217.0	NM_207623	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	311.77	264.95	220.14	275.28	263.11	203.36	279.89	233.02	153.01
Merged-chr19-11922342-1	chr19	11921842	11922842	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172635, intron 5 of 18)	intron (NM_172635, intron 5 of 18)	-1386.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	16.02	23.5	27.75	17.54	11.66	21.7	12.67	13.71	13.74
Merged-chr7-34388589-3	chr7	34388116	34389116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	1089.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	167.04	251.13	160.02	136.97	177.74	166.38	192.23	187.04	133.65
Merged-chr4-139169938-3	chr4	139169446	139170446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10709.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	158.46	133.63	74.92	250.99	146.02	142.27	149.98	149.89	76.19
Merged-chr1-92752020-3	chr1	92751533	92752533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79612.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	10.87	7.37	9.25	21.59	10.73	16.88	9.51	6.19	8.12
Merged-chr1-180972359-3	chr1	180971862	180972862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29844.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	76.08	58.98	74.92	67.47	37.79	33.76	55.98	54.83	45.59
Merged-chr10-86990776-3	chr10	86990271	86991271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17171.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	141.3	103.22	70.3	199.04	109.16	54.66	177.44	163.6	51.84
Merged-chr1-53838442-5	chr1	53837926	53838926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 23 of 28)	intron (NM_001001883, intron 23 of 28)	-10998.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	82.95	98.15	55.5	109.98	74.64	86.01	115.12	90.2	56.83
Merged-chr13-37993739-1	chr13	37993239	37994239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360842, intron 1 of 8)	CpG	469.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	290.6	236.38	156.32	255.72	199.67	181.66	260.88	178.19	113.66
Merged-chr3-55817127-3	chr3	55816628	55817628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 39 of 57)	intron (NM_030595, intron 39 of 57)	-29977.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	6.86	9.68	0.92	16.19	10.73	10.45	26.4	15.48	6.87
Merged-chr11-105420889-3	chr11	105420388	105421388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039242, intron 4 of 5)	L2|LINE|L2	35847.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	104.69	43.31	53.65	141.02	60.65	98.87	96.11	64.11	48.09
Merged-chr14-62908025-3	chr14	62907451	62908451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	42409.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	52.06	47.92	31.45	59.38	27.06	31.35	57.03	38.91	43.09
Merged-chr1-16619355-3	chr1	16618861	16619861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025773)	promoter-TSS (NM_025773)	-23.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	172.19	205.51	192.39	168.0	179.14	193.71	176.38	142.82	106.17
Merged-chr12-8674138-3	chr12	8673606	8674606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160219)	promoter-TSS (NM_001160219)	-28.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	255.14	202.75	260.84	219.96	169.81	195.32	239.75	167.58	126.15
Merged-chr15-99370531-3	chr15	99370026	99371026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011711)	promoter-TSS (NM_011711)	-44.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	27.46	15.67	24.05	19.57	17.26	34.56	24.29	17.69	19.98
Merged-chr2-30464163-3	chr2	30463674	30464674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	10025.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	32.04	15.21	12.02	50.6	20.06	9.65	39.08	33.6	9.37
Merged-chr5-137787770-3	chr5	137787271	137788271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005426)	promoter-TSS (NM_001005426)	-31.0	NM_001005426	381678.0	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	160.18	160.81	152.62	149.11	122.69	128.61	139.42	189.25	96.18
Merged-chr10-7473656-3	chr10	7473178	7474178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-201.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	43.48	56.22	58.27	64.1	31.72	68.32	76.05	68.98	32.48
Merged-chr2-16212966-3	chr2	16212450	16213450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-143354.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	12.01	16.59	16.65	12.14	10.26	13.66	11.62	5.75	8.12
Merged-chr19-23759731-3	chr19	23759268	23760268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	892.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	14.87	12.44	11.1	12.14	8.86	18.49	15.84	20.34	20.61
Merged-chr6-48832672-3	chr6	48832185	48833185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8303.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	55.49	48.38	58.27	37.11	27.52	38.58	38.02	32.72	38.1
Merged-chr13-113596157-3	chr13	113595663	113596663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	22401.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	52.06	49.3	40.7	63.42	42.45	52.25	68.65	62.79	34.97
Merged-chr11-50377612-3	chr11	50377139	50378139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021510)	promoter-TSS (NM_021510)	-80.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	300.33	294.44	201.64	238.18	278.04	209.79	248.2	261.32	176.12
Merged-chr2-19145587-3	chr2	19145083	19146083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53535.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	10.87	6.45	3.7	9.45	1.87	0.0	6.34	1.77	2.5
Merged-chr15-84995272-3	chr15	84994762	84995762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7291.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	142.44	119.34	118.39	155.86	130.16	128.61	203.84	150.34	100.55
Merged-chr17-28702868-3	chr17	28702379	28703379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	10311.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	86.95	85.25	34.22	111.33	70.44	77.97	57.03	76.05	39.97
Merged-chr1-119504834-3	chr1	119504316	119505316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-34.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	122.99	119.34	137.82	102.56	112.9	148.7	94.0	126.46	88.68
Merged-chr4-3981601-3	chr4	3981110	3982110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38053.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	7.44	11.98	5.55	14.84	7.93	8.84	8.45	3.98	10.62
Merged-chr6-148577884-3	chr6	148577386	148578386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36423.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	91.53	102.75	65.67	72.87	44.78	57.87	111.96	128.67	78.07
Merged-chr5-96807422-3	chr5	96806940	96807940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	14055.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	24.03	12.44	21.27	14.17	16.33	34.56	15.84	30.95	21.23
Merged-chr19-18631409-3	chr19	18630911	18631911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	402.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	317.49	389.36	272.86	267.86	263.58	267.66	183.78	235.68	231.7
Merged-chr17-31853847-3	chr17	31853341	31854341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010831, intron 3 of 13)	intron (NM_010831, intron 3 of 13)	1963.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	41.19	33.64	21.27	22.27	19.59	24.11	21.12	25.65	18.74
Merged-chr11-46785159-1	chr11	46784659	46785659	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-25640.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	7.44	3.23	0.0	3.37	2.33	1.61	22.18	5.75	8.74
Merged-chr5-114806192-3	chr5	114805666	114806666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026718)	TTS (NM_026718)	7810.0	NR_027818	66236.0	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	105.26	85.25	79.55	85.01	76.04	110.12	111.96	94.62	73.69
Merged-chr4-122985337-3	chr4	122984831	122985831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10600.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	8.01	5.53	6.47	8.1	3.27	4.82	7.39	3.98	5.0
Merged-chr1-131139576-1	chr1	131139076	131140076	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	12.01	10.14	4.62	6.75	8.4	6.43	6.34	5.75	0.0
Merged-chr8-126592938-3	chr8	126592429	126593429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164598, exon 1 of 2)	exon (NM_001164598, exon 1 of 2)	507.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	251.13	285.69	361.66	293.5	346.15	364.92	341.15	340.91	260.43
Merged-chr5-98034476-3	chr5	98033982	98034982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3520.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	6.86	10.6	9.25	18.22	13.06	25.72	5.28	3.1	7.49
Merged-chr12-91592315-3	chr12	91591805	91592805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	71.51	48.84	32.37	51.28	34.99	43.4	40.14	41.12	23.73
Merged-chr3-27618038-3	chr3	27617539	27618539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-33044.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	236.26	222.1	97.12	297.55	225.32	199.34	191.17	223.74	102.42
Merged-chr3-27182927-3	chr3	27182454	27183454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178772)	promoter-TSS (NM_178772)	-50.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	142.44	143.76	78.62	177.45	148.35	158.35	155.26	167.14	74.94
Merged-chr15-79774539-3	chr15	79774050	79775050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-83.0	NM_017470	54152.0	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	188.21	175.56	100.82	157.88	103.56	102.88	96.11	73.4	82.44
Merged-chr3-36862218-3	chr3	36861721	36862721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172679)	promoter-TSS (NM_172679)	-885.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	88.67	144.69	55.5	62.75	90.04	99.67	96.11	147.24	61.83
Merged-chr2-160360639-3	chr2	160360139	160361139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6426.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	53.2	41.01	36.07	56.0	39.65	53.85	39.08	40.24	24.36
Merged-chr16-22265439-3	chr16	22264956	22265956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	CpG	549.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	485.67	515.62	406.98	427.77	449.71	362.51	344.32	427.13	319.13
Merged-chr6-123227747-3	chr6	123227225	123228225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2118.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	133.29	118.88	79.55	157.21	85.84	90.83	105.62	110.98	66.2
Merged-chr14-47418260-3	chr14	47417741	47418741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144553, exon 1 of 19)	5' UTR (NM_144553, exon 1 of 19)	166.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	24.6	23.96	38.85	20.92	18.66	22.51	15.84	34.93	7.49
Merged-chr7-118279711-3	chr7	118279225	118280225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35818.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	51.48	68.66	66.6	52.63	53.65	77.97	86.61	76.05	59.95
Merged-chr17-8846682-3	chr17	8846169	8847169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-3316.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	39.47	23.96	26.82	24.96	22.39	28.94	5.28	4.86	9.99
Merged-chr2-129398459-3	chr2	129397966	129398966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-27327.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.86	11.98	13.87	12.82	17.73	9.65	23.24	29.18	15.61
Merged-chr1-37430098-3	chr1	37429570	37430570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356528)	promoter-TSS (NM_001356528)	33.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	435.33	454.33	293.21	347.48	301.36	254.0	384.45	383.8	168.62
Merged-chr4-40313196-3	chr4	40312689	40313689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040663)	promoter-TSS (NR_040663)	-43.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	16.59	7.83	5.55	12.82	9.33	9.65	10.56	12.38	6.25
Merged-chr10-117846114-3	chr10	117845614	117846614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024457)	promoter-TSS (NM_024457)	-140.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	458.79	218.87	257.14	430.47	220.66	215.42	299.96	197.21	143.64
Merged-chr1-86359516-3	chr1	86359037	86360037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	-37.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	376.98	304.58	271.94	369.07	331.22	251.59	284.11	284.31	182.36
Merged-chr14-103978977-3	chr14	103978462	103979462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045953, exon 3 of 3)	non-coding (NR_045953, exon 3 of 3)	48180.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	14.3	24.88	15.72	8.77	10.26	19.29	5.28	15.92	16.86
Merged-chr11-110475163-1	chr11	110474663	110475663	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-3352.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	2.29	3.69	1.85	8.1	3.27	9.65	27.46	14.59	5.0
Merged-chr2-153544056-3	chr2	153543575	153544575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14104.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	80.09	58.98	64.75	93.11	73.24	90.02	64.43	83.13	53.71
Merged-chr15-73596083-3	chr15	73595584	73596584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	442.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	138.44	138.24	123.02	192.29	133.42	123.78	153.15	185.71	89.31
Merged-chr15-59864895-3	chr15	59864397	59865397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-69938.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	70.93	58.98	30.52	72.87	63.45	81.99	65.48	61.02	38.1
Merged-chr12-85391277-3	chr12	85390779	85391779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-16562.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	73.22	59.44	61.97	73.54	34.52	52.25	66.54	56.16	43.09
Merged-chr13-64378818-2	chr13	64378279	64379279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8259.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	20.59	18.43	15.72	24.29	20.99	18.49	1.06	3.54	6.25
Merged-chr4-59871150-4	chr4	59870669	59871669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	43887.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	63.5	64.05	71.22	78.27	48.98	46.62	50.7	35.37	38.1
Merged-chr11-79146474-3	chr11	79145971	79146971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013571)	promoter-TSS (NM_013571)	2.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	81.23	64.51	69.37	65.45	63.45	57.07	99.28	56.6	41.84
Merged-chr15-39964066-3	chr15	39963577	39964577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045719, exon 2 of 3)	non-coding (NR_045719, exon 2 of 3)	1428.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	40.62	38.71	46.25	67.47	63.91	45.82	21.12	31.84	18.74
Merged-chr12-65073995-3	chr12	65073403	65074403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	35.0	NM_013902	30795.0	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	190.49	224.86	182.22	213.21	245.38	176.83	238.7	314.38	127.4
Merged-chr1-91298290-3	chr1	91297810	91298810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016717)	promoter-TSS (NM_016717)	-28.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	172.76	159.89	123.94	137.64	137.15	115.75	95.06	121.15	58.71
Merged-chr8-104334053-3	chr8	104333558	104334558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6536.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	113.84	107.36	87.87	102.56	88.64	131.82	83.44	101.7	102.42
Merged-chr18-60787197-3	chr18	60786703	60787703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12607.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	8.58	8.75	1.85	4.72	4.2	3.22	7.39	3.54	1.25
Merged-chr5-144964099-3	chr5	144963597	144964597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	1733.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	9.15	15.67	9.25	20.92	5.6	19.29	15.84	7.96	8.12
Merged-chr17-23677481-3	chr17	23676994	23677994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013749)	promoter-TSS (NM_013749)	-45.0	NM_013749	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	36.04	32.72	29.6	49.25	49.92	33.76	42.25	32.28	14.99
Merged-chr6-30048023-3	chr6	30047499	30048499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010938)	promoter-TSS (NM_010938)	11.0	NM_001164227	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	280.31	247.9	249.74	234.8	236.52	208.98	248.2	178.19	119.28
Merged-chr5-145201888-3	chr5	145201371	145202371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023322)	promoter-TSS (NM_023322)	11.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	276.3	315.18	173.89	250.99	268.71	232.29	236.59	284.76	157.38
Merged-chr16-3929331-3	chr16	3928816	3929816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20307.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	30.89	64.05	52.72	37.11	57.85	64.3	42.25	49.96	53.71
Merged-chr1-88227274-3	chr1	88226742	88227742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 1 of 41)	intron (NM_001281466, intron 1 of 41)	222.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	54.92	63.59	52.72	53.3	44.78	76.36	87.66	52.18	78.69
Merged-chr13-28616816-3	chr13	28616326	28617326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 5 of 7)	intron (NR_045054, intron 5 of 7)	94047.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	157.89	206.43	134.12	155.19	185.2	140.66	154.2	198.53	88.06
Merged-chrX-71364756-3	chrX	71364245	71365245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016985)	promoter-TSS (NM_016985)	-15.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	57.21	57.6	45.32	51.95	44.78	45.01	57.03	27.86	43.72
Merged-chr11-90249342-3	chr11	90248847	90249847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026178)	promoter-TSS (NM_026178)	-129.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	110.41	92.16	102.67	113.35	102.63	90.02	132.02	92.41	61.83
Merged-chr11-79530523-3	chr11	79530037	79531037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033711)	promoter-TSS (NM_001033711)	72.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	144.73	172.33	61.05	148.44	124.09	96.45	120.41	204.72	65.58
Merged-chr16-81454710-3	chr16	81454213	81455213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 5 of 17)	intron (NM_001113208, intron 5 of 17)	254016.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	13.16	19.35	15.72	17.54	14.93	11.25	10.56	22.99	13.74
Merged-chr8-111854370-3	chr8	111853858	111854858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011801)	promoter-TSS (NM_011801)	-48.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	56.06	52.99	25.9	47.23	51.32	27.33	67.6	49.96	14.99
Merged-chr8-11475903-3	chr8	11475411	11476411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2018.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	173.9	125.33	110.07	144.39	119.43	98.87	160.54	123.36	81.19
Merged-chr5-146833046-4	chr5	146832581	146833581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	191.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	259.71	239.61	214.59	266.51	207.13	202.55	212.29	259.11	146.14
Merged-chr19-38224148-3	chr19	38223668	38224668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081075)	promoter-TSS (NM_001081075)	-36.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	18.31	21.66	21.27	18.89	22.86	21.7	41.19	30.51	13.12
Merged-chr4-147938307-3	chr4	147937819	147938819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	51.48	72.34	42.55	45.21	45.72	56.27	68.65	72.96	51.21
Merged-chr15-57693983-3	chr15	57693494	57694494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199449)	promoter-TSS (NM_199449)	-673.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	234.54	232.24	148.92	298.9	257.98	159.15	183.78	165.37	63.7
Merged-chr10-67096339-3	chr10	67095838	67096838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	CpG	650.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	207.66	122.57	70.3	240.87	127.82	122.18	134.14	105.24	47.46
Merged-chr8-47713443-3	chr8	47712941	47713941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359133, intron 1 of 2)	CpG	490.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	73.79	78.33	83.25	78.27	67.18	99.67	101.39	91.53	83.69
Merged-chr10-119063595-3	chr10	119063102	119064102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	156.17	148.83	66.6	213.89	151.15	98.87	165.82	138.4	101.8
Merged-chr13-28754463-3	chr13	28753959	28754959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-43586.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	17.16	12.44	0.0	13.49	14.93	8.04	5.28	7.52	3.75
Merged-chr4-137468617-3	chr4	137468106	137469106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008305)	promoter-TSS (NM_008305)	-197.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	4.58	3.69	1.85	18.89	10.73	4.82	16.9	4.42	8.74
Merged-chr1-56089696-1	chr1	56089196	56090196	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70718.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	5.72	0.46	0.0	29.69	14.0	35.37	3.17	3.54	1.87
Merged-chr8-107293962-2	chr8	107293453	107294453	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286260, intron 1 of 12)	CpG	483.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	145.3	124.41	167.42	180.82	111.03	146.29	173.21	126.9	101.17
Merged-chr8-109704713-3	chr8	109704186	109705186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286393)	promoter-TSS (NM_001286393)	-860.0	NM_001286393	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	58.35	82.02	94.35	70.17	108.23	108.51	80.27	95.95	54.96
Merged-chr2-102901535-3	chr2	102901022	102902022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177785, exon 1 of 16)	5' UTR (NM_001177785, exon 1 of 16)	143.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	193.35	137.77	159.09	178.8	125.49	139.86	184.83	182.17	116.16
Merged-chr16-32877729-3	chr16	32877245	32878245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-39.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	167.61	166.34	105.44	170.7	171.21	142.27	178.5	152.99	93.05
Merged-chr18-62188933-3	chr18	62188411	62189411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8811.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	361.54	288.91	225.69	294.18	221.13	241.94	276.72	312.17	214.84
Merged-chr9-22125805-3	chr9	22125308	22126308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007388)	TTS (NM_007388)	4790.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	66.36	47.46	74.92	63.42	41.52	81.18	52.81	68.09	71.2
Merged-chr8-66860210-3	chr8	66859715	66860715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163564)	promoter-TSS (NM_001163564)	-2.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	105.83	87.09	61.97	101.88	92.84	61.09	65.48	73.4	23.11
Merged-chr14-102884010-3	chr14	102883491	102884491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98641.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	184.77	216.11	143.37	163.96	140.42	137.45	154.2	198.53	113.04
Merged-chr8-109608514-3	chr8	109608001	109609001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020046, exon 1 of 9)	5' UTR (NM_020046, exon 1 of 9)	172.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	102.4	131.32	129.49	90.41	125.49	151.11	143.64	155.64	88.06
Merged-chr11-67589057-3	chr11	67588540	67589540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2540.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	30.32	18.43	12.95	18.89	12.6	4.02	28.52	19.46	12.49
Merged-chr14-26437776-3	chr14	26437272	26438272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80225.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	81.8	90.77	46.25	89.06	55.51	61.89	71.82	99.93	59.33
Merged-chr7-83647800-3	chr7	83647292	83648292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 16 of 18)	intron (NM_001360088, intron 16 of 18)	7703.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	75.51	92.16	72.15	68.82	85.84	76.36	81.33	84.45	54.96
Merged-chr6-129533315-3	chr6	129532834	129533834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-50.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	368.97	319.32	218.29	352.2	362.01	241.94	308.41	344.89	132.4
Merged-chr6-51533623-3	chr6	51533136	51534136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9376.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	112.69	121.65	77.7	103.23	128.29	96.45	125.69	99.93	63.7
Merged-chr16-22297108-3	chr16	22296591	22297591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2103.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	9.72	5.07	3.7	16.19	12.13	16.88	21.12	7.96	5.0
Merged-chr10-17613473-3	chr10	17612983	17613983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-109745.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	12.59	13.82	8.32	20.24	16.33	32.15	17.96	19.01	8.74
Merged-chr7-67242182-3	chr7	67241684	67242684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	19568.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	97.82	99.07	66.6	114.7	69.98	120.57	102.45	97.72	71.82
Merged-chr2-27442420-3	chr2	27441940	27442940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360790)	promoter-TSS (NM_001360790)	4.0	NM_001360792	100504116.0	Mm.36529	NM_001360790		Brd3os	A230069D13|D2Bwg1423e|Gm20071	bromodomain containing 3, opposite strand	protein-coding	15.45	7.37	6.47	17.54	4.2	4.82	7.39	6.63	8.74
Merged-chr7-126861883-3	chr7	126861392	126862392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172746)	promoter-TSS (NM_172746)	-80.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	131.57	128.1	62.9	100.53	108.7	90.02	136.25	122.92	81.19
Merged-chr9-120054999-3	chr9	120054500	120055500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	13296.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	22.31	13.82	24.97	36.43	23.33	29.74	24.29	13.71	14.36
Merged-chr14-68598164-3	chr14	68597664	68598664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16092.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	37.76	56.68	49.02	57.35	52.72	70.73	32.74	39.8	24.98
Merged-chr5-32136497-3	chr5	32135994	32136994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008037)	promoter-TSS (NM_008037)	22.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	455.35	526.22	491.15	400.78	544.42	414.75	398.18	507.61	323.51
Merged-chr5-81037324-3	chr5	81036840	81037840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	15747.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	19.45	22.12	17.57	12.82	9.33	23.31	4.22	12.38	7.49
Merged-chr11-98773951-3	chr11	98773445	98774445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145434, intron 1 of 7)	CpG	1432.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	266.0	174.18	125.79	257.74	167.94	171.21	213.35	266.18	110.54
Merged-chr2-25193603-3	chr2	25193099	25194099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146115, exon 2 of 2)	3' UTR (NM_146115, exon 2 of 2)	3214.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	34.9	27.19	12.95	25.64	17.26	28.13	20.07	9.73	13.12
Merged-chr8-106935652-3	chr8	106935105	106936105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009229)	promoter-TSS (NM_009229)	-145.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	89.81	88.01	109.14	93.11	76.04	99.67	85.55	86.66	51.84
Merged-chr4-88415272-3	chr4	88414766	88415766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 6 of 6)	L1MA6|LINE|L1	23660.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	50.91	40.55	24.97	40.48	30.32	42.6	55.98	49.08	30.6
Merged-chr16-90199197-4	chr16	90198711	90199711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21531.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	216.24	176.94	95.27	273.26	175.87	163.17	229.19	219.31	119.28
Merged-chr7-114276156-3	chr7	114275655	114276655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-39.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	98.97	87.09	62.9	72.19	60.65	73.14	82.38	95.07	58.71
Merged-chr15-51991185-1	chr15	51990685	51991685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009009, intron 1 of 13)	CpG	575.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	280.88	203.21	140.59	199.72	152.55	144.68	220.74	150.34	91.18
Merged-chr13-20092525-3	chr13	20092009	20093009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	2002.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	73.22	77.41	60.12	79.62	60.65	57.87	61.26	76.05	44.97
Merged-chr2-160452173-3	chr2	160451681	160452681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85116.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	9.72	7.37	9.25	22.94	12.13	36.17	13.73	11.5	5.0
Merged-chr5-41844344-3	chr5	41843803	41844803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	12.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	105.26	74.19	67.52	105.93	72.78	64.3	123.57	93.3	51.21
Merged-chr8-57504974-1	chr8	57504474	57505474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_126556)	promoter-TSS (NR_126556)	-841.0	NR_126556	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	32.04	24.88	25.9	0.67	1.87	1.61	2.11	0.44	0.0
Merged-chr4-118135055-3	chr4	118134540	118135540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-94.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	131.0	108.28	171.12	121.45	104.96	148.7	114.07	134.42	60.58
Merged-chr16-91407000-3	chr16	91406495	91407495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 1 of 6)	intron (NM_008349, intron 1 of 6)	760.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	348.95	260.8	202.56	304.97	223.92	229.88	348.54	322.78	184.24
Merged-chr10-118811305-3	chr10	118810793	118811793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57610.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	204.8	178.78	128.57	176.78	146.48	135.84	174.27	225.06	111.17
Merged-chr13-3918153-3	chr13	3917638	3918638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019671)	promoter-TSS (NM_019671)	82.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	16.02	17.51	3.7	14.17	8.4	14.47	5.28	11.5	6.87
Merged-chr15-31510623-3	chr15	31510119	31511119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	intron (NM_172606, intron 1 of 25)	20418.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	22.88	18.43	18.5	15.52	13.53	18.49	21.12	16.8	7.49
Merged-chr4-134468347-3	chr4	134467846	134468846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019641)	promoter-TSS (NM_019641)	26.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	17.73	9.68	5.55	22.27	11.2	16.88	33.8	19.9	10.62
Merged-chr13-107899835-3	chr13	107899339	107900339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-9775.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	76.66	74.65	85.1	80.97	60.65	57.07	58.09	70.3	55.58
Merged-chr12-85340133-3	chr12	85339647	85340647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-785.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	153.88	98.15	108.22	138.32	60.18	129.41	167.93	127.34	98.05
Merged-chr19-6363697-3	chr19	6363150	6364150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011750)	promoter-TSS (NM_011750)	-40.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	296.32	226.71	206.26	270.56	232.32	169.6	205.96	252.48	128.03
Merged-chr18-37969827-3	chr18	37969309	37970309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175684)	promoter-TSS (NM_175684)	-78.0	NM_175684	319262.0	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	28.6	19.35	9.25	35.76	35.45	19.29	38.02	32.72	11.24
Merged-chr13-110600198-3	chr13	110599687	110600687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	205143.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	128.14	118.88	54.57	211.86	181.94	74.75	111.96	116.73	36.85
Merged-chr9-61022742-3	chr9	61022254	61023254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5685.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	102.4	138.7	95.27	119.43	99.83	86.81	109.84	114.08	79.94
Merged-chr9-88953352-3	chr9	88952814	88953814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3606.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	69.22	47.0	44.4	62.75	29.39	44.21	33.8	22.11	21.86
Merged-chr5-123694675-3	chr5	123694176	123695176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10315.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	63.5	81.1	47.17	88.39	92.37	71.54	72.88	84.45	41.22
Merged-chr17-32036403-3	chr17	32035896	32036896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028244, exon 1 of 16)	5' UTR (NM_028244, exon 1 of 16)	234.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	44.62	36.4	31.45	71.52	48.52	57.07	54.92	48.2	19.98
Merged-chr12-17348340-3	chr12	17347844	17348844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008421)	promoter-TSS (NM_001008421)	-149.0	NM_001008421	217431.0	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	62.93	111.51	122.09	93.79	100.77	100.47	153.15	164.93	108.04
Merged-chr9-110681333-3	chr9	110680828	110681828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	24825.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	20.02	18.89	30.52	21.59	7.46	12.06	36.97	33.16	17.49
Merged-chr6-39379473-3	chr6	39378961	39379961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1754.0	NR_155077	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	80.09	77.87	58.27	76.24	54.11	29.74	57.03	38.91	40.59
Merged-chr9-22002785-3	chr9	22002284	22003284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029939)	promoter-TSS (NM_029939)	-150.0	NM_029939	77609.0	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	56.06	60.36	65.67	51.95	43.85	77.16	47.53	53.06	50.59
Merged-chr12-17657782-3	chr12	17657328	17658328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-32981.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	116.7	160.81	112.84	111.33	111.03	110.92	209.12	214.45	73.07
Merged-chr11-120013342-3	chr11	120012878	120013878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198787, intron 9 of 13)	intron (NM_001198787, intron 9 of 13)	-1389.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	14.3	10.6	11.1	16.19	8.4	16.08	8.45	9.29	6.25
Merged-chr19-8871524-3	chr19	8871012	8872012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362044)	promoter-TSS (NM_001362044)	-36.0	NM_146093	225896.0	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529|mY33K	UBX domain protein 1	protein-coding	208.8	168.19	127.64	203.09	194.53	193.71	196.45	219.76	113.66
Merged-chr10-71365215-1	chr10	71364715	71365715	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 2 of 5)	intron (NM_027184, intron 2 of 5)	17452.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	16.59	11.52	9.25	75.57	59.25	55.46	21.12	14.15	6.87
Merged-chr6-52012629-3	chr6	52012106	52013106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-57.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	103.54	101.37	128.57	91.76	98.43	164.78	161.6	141.05	113.66
Merged-chr6-118455182-3	chr6	118454681	118455681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361901, intron 1 of 5)	CpG	325.0	NM_028335	72720.0	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	26.31	17.05	18.5	47.23	55.51	39.39	13.73	16.36	13.12
Merged-chr19-55556397-3	chr19	55555898	55556898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145806.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	60.07	52.07	41.62	48.58	43.39	40.19	44.36	49.96	26.23
Merged-chr3-96564868-3	chr3	96564367	96565367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	1934.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	96.68	72.8	100.82	101.21	73.24	106.9	109.84	93.74	51.84
Merged-chr10-81643703-3	chr10	81643209	81644209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027480, exon 17 of 20)	exon (NM_027480, exon 17 of 20)	-5360.0	NM_001142963	100233208.0	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	-	predicted gene 10778	protein-coding	124.14	113.35	101.74	138.99	167.94	147.09	167.93	102.14	94.93
Merged-chr2-79206423-3	chr2	79205908	79206908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49018.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	36.61	46.54	26.82	60.05	44.32	45.01	23.24	33.6	18.11
Merged-chr11-3514772-3	chr11	3514277	3515277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053267)	promoter-TSS (NM_053267)	93.0	NM_053267	114679.0	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	5.15	8.75	5.55	8.1	10.26	23.31	9.51	7.52	1.25
Merged-chr11-119928432-3	chr11	119927914	119928914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	14604.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	45.19	29.03	35.15	62.07	36.85	40.19	45.42	34.93	31.23
Merged-chr15-84680973-2	chr15	84680505	84681505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146061)	promoter-TSS (NM_146061)	7.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	11.44	5.99	11.1	16.87	3.73	5.63	5.28	0.88	0.62
Merged-chr10-70245122-3	chr10	70244604	70245604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025807)	promoter-TSS (NM_025807)	-172.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	59.49	66.81	42.55	58.03	56.45	73.14	77.1	77.82	50.59
Merged-chr16-98082522-3	chr16	98082043	98083043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015491)	promoter-TSS (NR_015491)	-104.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	29.75	23.04	9.25	37.11	45.25	54.66	45.42	50.85	23.11
Merged-chr5-135187097-3	chr5	135186564	135187564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011714)	promoter-TSS (NM_011714)	-259.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	197.93	178.32	185.92	135.62	146.02	151.11	167.93	160.95	120.53
Merged-chr19-6304937-3	chr19	6304463	6305463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	48.62	31.33	15.72	38.46	10.26	25.72	36.97	20.34	22.48
Merged-chr3-144720304-3	chr3	144719836	144720836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282042)	promoter-TSS (NM_001282042)	-1.0	NM_001282037	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	298.61	121.65	149.84	307.67	107.3	119.76	196.45	76.05	74.94
Merged-chr3-95624914-3	chr3	95624432	95625432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-48.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	249.99	219.33	140.59	201.74	169.81	161.56	210.18	220.2	115.54
Merged-chr16-15637481-3	chr16	15636991	15637991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	-91.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	105.26	98.61	73.07	72.19	72.31	81.99	97.17	93.74	53.71
Merged-chr11-118107241-3	chr11	118106737	118107737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 18 of 80)	intron (NM_001167746, intron 18 of 80)	21982.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	74.94	71.42	74.0	120.1	111.5	135.04	129.91	107.89	45.59
Merged-chr10-42270850-3	chr10	42270362	42271362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5880.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	90.38	115.66	101.74	105.93	104.96	74.75	124.63	156.09	66.82
Merged-chr4-139574452-3	chr4	139573906	139574906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205173)	promoter-TSS (NM_001205173)	-314.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	97.25	59.9	65.67	41.83	31.72	52.25	74.99	65.0	48.09
Merged-chr2-35756701-3	chr2	35756191	35757191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59959.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	14.3	6.91	4.62	16.87	4.2	4.82	8.45	5.31	1.87
Merged-chr4-40821779-3	chr4	40821268	40822268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	28370.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	8.01	10.6	14.8	16.19	19.13	15.27	15.84	13.71	14.99
Merged-chr7-28981935-3	chr7	28981429	28982429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-41.0	NM_001285942	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	96.11	91.7	133.19	93.11	106.36	123.78	100.34	102.14	53.71
Merged-chr2-3424007-3	chr2	3423514	3424514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146114)	promoter-TSS (NM_146114)	-117.0	NM_146114	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	351.81	320.25	178.52	329.26	274.77	209.79	315.8	376.28	149.89
Merged-chr14-55604113-3	chr14	55603609	55604609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	124.0	NM_001159417	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	205.37	174.64	153.54	216.58	171.21	139.86	220.74	252.04	108.67
Merged-chr18-37926195-4	chr18	37925667	37926667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	9309.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	66.93	82.02	45.32	53.3	56.91	65.11	74.99	72.07	51.84
Merged-chr18-74393130-1	chr18	74392630	74393630	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49489.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	12.59	6.45	4.62	12.82	5.13	12.86	3.17	4.42	3.75
Merged-chr2-129129697-3	chr2	129129235	129130235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025395)	promoter-TSS (NM_025395)	35.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	148.73	123.49	121.17	161.93	170.28	145.49	124.63	136.63	74.32
Merged-chr12-119398418-3	chr12	119397916	119398916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44994.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	53.77	41.47	19.42	32.39	17.26	19.29	23.24	31.39	29.98
Merged-chr14-102911775-3	chr14	102911282	102912282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70850.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	45.76	20.74	26.82	42.51	22.39	48.23	31.69	39.8	42.47
Merged-chr4-143412766-3	chr4	143412270	143413270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355724, exon 1 of 4)	5' UTR (NM_001355724, exon 1 of 4)	344.0	NM_001355724	242736.0	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	88.1	164.96	128.57	92.44	125.96	149.5	118.29	174.21	98.68
Merged-chr2-114139243-2	chr2	114138749	114139749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	11321.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	96.68	72.8	40.7	95.14	56.91	32.15	3.17	2.65	1.25
Merged-chrX-164979520-3	chrX	164978984	164979984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	intron (NM_029730, intron 2 of 14)	891.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	230.54	267.25	141.52	232.1	209.46	160.76	200.68	296.69	111.79
Merged-chr8-110919835-3	chr8	110919330	110920330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-35.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	16.59	8.75	5.55	8.77	9.33	15.27	15.84	3.1	8.74
Merged-chr5-134214584-3	chr5	134214071	134215071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359852, intron 13 of 14)	intron (NM_001359852, intron 13 of 14)	15054.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	17.73	14.75	20.35	18.89	19.13	30.54	21.12	16.36	13.12
Merged-chr9-66593517-1	chr9	66593017	66594017	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-402.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	125.28	147.45	117.47	124.82	113.83	159.95	143.64	144.59	114.29
Merged-chr13-42976323-3	chr13	42975822	42976822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 2 of 12)	MIR|SINE|MIR	110075.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	2.86	14.75	11.1	13.49	5.13	7.23	6.34	5.75	5.0
Merged-chr12-8208237-3	chr12	8207746	8208746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167767, intron 1 of 5)	CpG	119.0	NM_001167767	68832.0	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	140.15	174.18	121.17	151.81	201.07	117.35	191.17	175.54	78.69
Merged-chr18-88866637-3	chr18	88866148	88867148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	27559.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	16.02	17.05	10.17	16.87	20.06	24.92	16.9	16.36	16.24
Merged-chr19-60890202-3	chr19	60889704	60890704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018869, exon 1 of 16)	5' UTR (NM_018869, exon 1 of 16)	455.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	88.1	96.76	131.34	98.51	114.76	147.9	76.05	67.65	64.95
Merged-chr3-98025663-3	chr3	98025168	98026168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	12130.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	355.82	406.87	201.64	367.72	396.07	234.71	247.15	329.41	181.74
Merged-chr1-183369632-3	chr1	183369121	183370121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177389)	promoter-TSS (NM_177389)	-56.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	120.7	96.3	84.17	108.63	73.24	118.16	78.16	64.56	44.97
Merged-chr16-90301102-3	chr16	90300598	90301598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16595.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	48.62	39.17	31.45	39.81	27.52	22.51	29.57	32.28	22.48
Merged-chr2-5861042-3	chr2	5860552	5861552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016918, exon 4 of 10)	exon (NM_016918, exon 4 of 10)	1882.0	NR_152181	791411.0	Mm.442531	NR_152181		Gm13199	-	predicted gene 13199	ncRNA	203.08	183.85	152.62	201.07	176.81	184.07	207.01	275.03	120.53
Merged-chr2-119208601-1	chr2	119208101	119209101	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164827)	promoter-TSS (NM_001164827)	-119.0	NM_001164827	72008.0	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	159.6	167.26	145.22	147.09	175.87	171.21	182.72	221.53	114.29
Merged-chr11-117076804-3	chr11	117076294	117077294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027059)	promoter-TSS (NR_027059)	11.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	86.38	81.56	88.8	93.11	90.5	108.51	121.46	95.07	52.46
Merged-chr11-117960186-3	chr11	117959697	117960697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9169.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	291.75	188.92	94.35	292.83	177.27	127.8	166.88	156.97	109.29
Merged-chr8-70776790-3	chr8	70776280	70777280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	-68.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	217.95	196.75	146.14	234.8	215.53	186.48	207.01	247.61	110.54
Merged-chr17-88132931-5	chr17	88132424	88133424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7412.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	280.31	248.36	122.09	298.23	263.11	233.1	173.21	221.08	114.91
Merged-chr5-117389083-3	chr5	117388576	117389576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028128)	promoter-TSS (NM_028128)	-53.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	57.21	64.97	29.6	60.05	45.72	40.19	52.81	34.93	45.59
Merged-chr15-59887972-3	chr15	59887401	59888401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	70.36	64.05	49.02	65.45	53.65	108.51	46.47	53.94	40.59
Merged-chr1-93668950-3	chr1	93668447	93669447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16628.0	NM_016778	51800.0	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	10.87	3.23	16.65	6.75	3.73	15.27	8.45	8.84	6.87
Merged-chr11-79520119-3	chr11	79519610	79520610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	3652.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	189.92	240.07	130.42	149.11	147.88	69.93	145.75	201.19	125.53
Merged-chr7-116409667-3	chr7	116409187	116410187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011083, intron 2 of 32)	intron (NM_011083, intron 2 of 32)	33771.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	53.2	70.04	48.1	100.53	99.37	81.18	73.93	100.37	55.58
Merged-chr14-120275615-3	chr14	120275121	120276121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-48.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	114.41	123.49	90.65	142.37	110.56	98.87	149.98	152.99	68.07
Merged-chr16-93914059-2	chr16	93913557	93914557	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15510.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	20.59	14.28	12.95	37.11	34.06	30.54	316.86	353.29	184.24
Merged-chr6-125447462-3	chr6	125446975	125447975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47285.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	35.47	34.56	18.5	49.25	29.39	37.78	72.88	70.3	38.1
Merged-chr1-169531524-3	chr1	169531016	169532016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-52.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	60.07	74.65	48.1	60.05	57.38	41.8	62.31	80.92	41.84
Merged-chr7-109519621-1	chr7	109519121	109520121	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028079)	promoter-TSS (NR_028079)	426.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	241.41	265.87	183.14	225.36	278.04	254.8	241.87	217.99	164.88
Merged-chr12-78225945-2	chr12	78225444	78226444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-711.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	272.3	259.88	178.52	243.57	231.85	196.93	343.26	331.63	153.63
Merged-chr12-117560640-3	chr12	117560161	117561161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	44182.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	32.04	29.95	11.1	41.83	29.86	30.54	95.06	72.96	47.46
Merged-chr17-81658046-3	chr17	81657539	81658539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	80348.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	19.45	11.52	9.25	18.89	16.33	8.04	23.24	10.17	5.0
Merged-chr10-45019623-3	chr10	45019119	45020119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47595.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	199.07	229.93	141.52	212.54	187.54	90.02	181.66	234.35	80.56
Merged-chr12-69360837-3	chr12	69360358	69361358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3682.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	26.89	43.77	21.27	36.43	28.92	32.96	42.25	42.89	38.72
Merged-chr6-5339491-1	chr6	5338991	5339991	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3_Mus|LINE|L1	-41118.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.43	4.61	0.0	3.37	1.4	2.41	70.76	40.24	29.98
Merged-chr11-102429230-3	chr11	102428690	102429690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1132.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	339.23	303.66	131.34	379.19	251.45	217.83	314.74	400.6	153.63
Merged-chrUn_JH584304-67826-1	chrUn_JH584304	67326	68326	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-8137.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	59.15	43.33	0.0
Merged-chr7-100992157-3	chr7	100991644	100992644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19854.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	70.36	47.46	35.15	82.99	77.44	104.49	40.14	35.37	15.61
Merged-chr12-98746313-3	chr12	98745816	98746816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-652.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	87.52	104.14	36.07	63.42	83.51	48.23	98.23	100.37	47.46
Merged-chr10-59981014-3	chr10	59980503	59981503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21802.0	NM_026937	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	43.48	43.31	74.92	72.87	70.91	51.44	23.24	43.33	39.35
Merged-chr17-17374189-3	chr17	17373674	17374674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	-158.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	121.85	258.96	160.94	119.43	215.53	188.09	159.48	229.48	80.56
Merged-chr11-117824731-3	chr11	117824241	117825241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009387, exon 3 of 7)	exon (NM_009387, exon 3 of 7)	-1178.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	92.1	65.43	65.67	120.1	86.3	45.82	115.12	108.77	41.22
Merged-chr13-34874421-3	chr13	34873921	34874921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1073.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	62.93	72.8	64.75	68.15	66.71	74.75	73.93	76.94	61.2
Merged-chr7-99182853-3	chr7	99182357	99183357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026384)	promoter-TSS (NM_026384)	-144.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	270.01	165.88	86.95	266.51	170.74	129.41	130.97	111.87	61.83
Merged-chr13-73467165-3	chr13	73466609	73467609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145376)	promoter-TSS (NM_145376)	-274.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	73.79	43.31	53.65	53.3	28.46	30.54	44.36	34.05	29.98
Merged-chr6-37617555-3	chr6	37617048	37618048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87375.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	34.32	27.65	26.82	26.31	19.59	12.86	28.52	19.46	24.98
Merged-chrX-13281589-1	chrX	13281089	13282089	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	CpG	567.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	295.75	310.57	333.91	274.61	268.24	203.36	252.43	242.31	190.48
Merged-chr12-85745944-3	chr12	85745434	85746434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-605.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	25.74	13.82	7.4	22.27	10.73	9.65	15.84	5.75	8.74
Merged-chr10-91181805-3	chr10	91181312	91182312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10193.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	168.76	217.95	124.87	177.45	132.02	146.29	205.96	215.78	151.76
Merged-chr4-44012607-3	chr4	44012117	44013117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290470)	promoter-TSS (NM_001290470)	-26.0	NM_016760	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	229.39	196.75	194.24	197.69	206.66	196.12	197.51	149.45	125.53
Merged-chr5-105616813-3	chr5	105616303	105617303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83166.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	125.85	74.19	55.5	102.56	37.32	33.76	73.93	67.65	41.84
Merged-chr12-84038358-3	chr12	84037862	84038862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134247)	promoter-TSS (NM_134247)	-17.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	63.5	31.33	23.12	82.32	52.25	20.9	44.36	47.75	15.61
Merged-chr19-47459076-3	chr19	47458563	47459563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	5348.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	29.75	10.14	6.47	52.63	21.93	15.27	20.07	12.82	18.74
Merged-chr10-121475871-2	chr10	121475366	121476366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	CpG	384.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	214.52	193.07	200.71	236.83	177.74	239.53	217.57	207.38	125.53
Merged-chr8-124242377-3	chr8	124241859	124242859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	MIR|SINE|MIR	10965.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	33.18	66.81	49.95	52.63	30.79	47.42	71.82	63.23	60.58
Merged-chr9-60999234-3	chr9	60998756	60999756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-17813.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	21.17	14.75	8.32	24.96	14.46	9.65	29.57	17.69	7.49
Merged-chr16-95708341-3	chr16	95707843	95708843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	5936.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	373.55	311.03	202.56	355.58	314.89	234.71	275.66	302.0	181.74
Merged-chr7-118479331-3	chr7	118478796	118479796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12679.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	132.72	141.92	119.32	155.86	125.96	168.8	108.79	148.13	62.45
Merged-chr14-31172947-3	chr14	31172438	31173438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022656, intron 19 of 20)	intron (NM_022656, intron 19 of 20)	-4297.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	44.05	25.34	10.17	49.93	36.39	40.19	44.36	32.72	19.98
Merged-chr17-56462319-3	chr17	56461866	56462866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252456)	promoter-TSS (NM_001252456)	-145.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	22.31	18.89	20.35	31.04	22.39	36.97	29.57	24.76	14.99
Merged-chr7-45707009-3	chr7	45706521	45707521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 2 of 3)	CpG	1774.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	339.23	379.23	270.09	315.09	355.48	233.1	354.88	502.3	220.46
Merged-chr12-100725235-3	chr12	100724718	100725718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330702)	promoter-TSS (NM_001330702)	-98.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	109.83	100.91	63.82	93.79	90.04	57.07	82.38	76.49	48.09
Merged-chr2-34906985-3	chr2	34906483	34907483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028716, intron 4 of 14)	intron (NM_028716, intron 4 of 14)	6993.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	48.05	70.5	53.65	68.82	67.18	103.69	53.87	72.96	53.08
Merged-chr7-34918634-3	chr7	34918138	34919138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	6231.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	66.36	67.27	29.6	66.8	48.52	57.87	61.26	34.49	25.61
Merged-chr5-64344486-3	chr5	64343993	64344993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	intron (NM_001289514, intron 17 of 18)	114136.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	97.82	68.66	34.22	106.61	88.17	77.97	100.34	96.39	56.21
Merged-chr4-44756208-3	chr4	44755713	44756713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-346.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	85.81	98.61	84.17	95.14	58.78	69.13	119.35	127.34	61.83
Merged-chr2-155517928-3	chr2	155517435	155518435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019811)	promoter-TSS (NM_019811)	-108.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	44.62	41.93	46.25	78.94	56.45	66.71	85.55	67.21	36.85
Merged-chr6-97449927-3	chr6	97449418	97450418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	9368.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	199.07	123.49	100.82	267.19	106.36	142.27	156.32	152.55	94.93
Merged-chr11-116621452-3	chr11	116620970	116621970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	2782.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	133.86	83.4	73.07	111.33	68.11	54.66	140.47	99.49	50.59
Merged-chr9-4376378-3	chr9	4375876	4376876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145609)	promoter-TSS (NM_145609)	-176.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	64.64	66.35	36.07	71.52	62.98	83.59	77.1	92.41	51.84
Merged-chr5-122318334-3	chr5	122317838	122318838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 4 of 5)	intron (NM_177242, intron 4 of 5)	33940.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	5.15	8.75	13.87	8.1	5.13	10.45	11.62	5.75	9.37
Merged-chr11-53299860-3	chr11	53299357	53300357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008300, intron 1 of 18)	CpG	622.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	401.01	444.66	394.96	375.14	407.26	334.38	343.26	378.94	237.95
Merged-chr2-60209837-3	chr2	60209342	60210342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-94.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	354.1	288.45	218.29	362.32	232.79	181.66	221.8	193.67	148.64
Merged-chr5-53998369-3	chr5	53997865	53998865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081103)	promoter-TSS (NM_001081103)	-158.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	95.53	69.58	59.2	64.1	46.18	53.85	92.94	34.49	46.84
Merged-chr11-103400205-3	chr11	103399704	103400704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	L1MB7|LINE|L1	12460.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	228.82	193.07	111.92	271.91	197.33	143.88	229.19	245.84	93.05
Merged-chr13-97137956-3	chr13	97137447	97138447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271464)	promoter-TSS (NM_001271464)	10.0	NM_001271464	320806.0	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	314.06	300.43	214.59	317.12	294.83	196.12	358.05	363.9	161.13
Merged-chr4-107935409-3	chr4	107934922	107935922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-11833.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	46.34	34.56	22.2	43.86	26.12	38.58	29.57	25.2	17.49
Merged-chr5-31697858-3	chr5	31697379	31698379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181282)	promoter-TSS (NM_181282)	-171.0	NM_181281	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	499.4	476.91	332.98	482.42	404.0	300.62	533.37	550.94	206.72
Merged-chr4-65545723-3	chr4	65545225	65546225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	Lx9|LINE|L1	-59261.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	6.29	6.45	3.7	8.1	4.67	0.0	7.39	6.63	1.25
Merged-chr11-103315528-3	chr11	103315036	103316036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29166.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	39.47	29.95	12.95	43.86	18.19	16.88	17.96	17.24	9.99
Merged-chr12-3740284-3	chr12	3739847	3740847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-66633.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	173.9	184.77	125.79	203.09	215.99	132.63	270.38	295.81	124.28
Merged-chr6-136683851-3	chr6	136683345	136684345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER74C|LTR|ERVL	-21952.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	26.31	30.41	9.25	23.62	14.46	19.29	69.71	88.43	37.47
Merged-chr19-4113889-3	chr19	4113368	4114368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_075078)	TTS (NR_075078)	7707.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	275.73	233.16	178.52	205.79	229.06	166.38	195.39	256.01	113.04
Merged-chr2-9879732-3	chr2	9879233	9880233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1133.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	6.29	4.15	7.4	2.7	3.73	1.61	3.17	1.77	0.0
Merged-chr5-73292748-3	chr5	73292257	73293257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159889)	promoter-TSS (NM_001159889)	-37.0	NM_001159887	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	231.11	248.82	152.62	194.32	214.59	151.11	193.28	248.06	128.65
Merged-chr9-107264051-3	chr9	107263541	107264541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	25355.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	13.16	7.37	3.7	27.66	17.26	22.51	12.67	7.96	11.24
Merged-chr2-90580578-3	chr2	90580101	90581101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	46.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	267.72	207.81	275.64	282.03	155.35	163.97	269.33	152.99	143.64
Merged-chr4-125114842-3	chr4	125114332	125115332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13049.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	56.63	52.53	57.35	31.71	27.99	53.85	58.09	72.96	44.34
Merged-chr11-70667527-3	chr11	70667039	70668039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167669, intron 1 of 6)	intron (NM_001167669, intron 1 of 6)	1877.0	NM_172561	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	120.13	86.63	75.85	112.68	68.11	93.24	86.61	72.96	57.46
Merged-chr2-62664263-3	chr2	62663782	62664782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145523)	promoter-TSS (NM_145523)	-45.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	16.59	11.98	5.55	41.16	22.39	6.43	31.69	22.99	8.12
Merged-chr12-12231793-3	chr12	12231294	12232294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30345.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	68.65	76.03	43.47	49.93	39.19	42.6	63.37	57.92	39.35
Merged-chr12-69365993-3	chr12	69365493	69366493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6157.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	77.8	84.32	45.32	50.6	60.18	54.66	67.6	98.6	60.58
Merged-chr1-177258534-3	chr1	177258036	177259036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9769.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	202.51	141.92	167.42	203.09	112.43	152.72	198.56	108.77	134.9
Merged-chr5-121586648-3	chr5	121586121	121587121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	7203.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	61.21	84.78	58.27	51.95	56.91	102.08	87.66	115.85	66.82
Merged-chr17-47768847-3	chr17	47768350	47769350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-16894.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	202.51	193.07	157.24	240.2	207.6	201.75	290.45	334.28	154.88
Merged-chr6-125010219-3	chr6	125009729	125010729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	-152.0	NM_001347452	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	156.17	94.92	98.97	116.05	57.85	94.04	137.3	105.24	104.3
Merged-chr1-75180409-3	chr1	75179904	75180904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023732)	promoter-TSS (NM_023732)	-12.0	NM_023732	74104.0	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	21.17	16.13	26.82	13.49	18.66	19.29	21.12	16.36	17.49
Merged-chr7-55855783-3	chr7	55855287	55856287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	13716.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	100.11	58.98	56.42	43.86	19.59	32.15	63.37	44.22	50.59
Merged-chr11-70489839-3	chr11	70489320	70490320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15454.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	268.87	201.82	146.14	268.54	163.28	180.85	188.0	235.23	110.54
Merged-chr8-13501403-3	chr8	13500892	13501892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-6857.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	18.88	23.04	24.05	39.13	31.72	49.03	25.35	16.8	18.74
Merged-chr11-45697610-3	chr11	45697126	45698126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110457.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	91.53	82.48	72.15	82.99	83.97	94.85	83.44	72.07	51.21
Merged-chr16-10785165-3	chr16	10784678	10785678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271603, intron 1 of 1)	CpG	358.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	101.83	80.64	90.65	93.79	68.58	57.87	100.34	87.11	58.08
Merged-chr2-29889668-3	chr2	29889154	29890154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	-66.0	NM_001177661	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	198.5	138.24	126.72	162.61	121.29	156.74	173.21	130.0	96.18
Merged-chr5-34660263-3	chr5	34659762	34660762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029278)	promoter-TSS (NM_029278)	-114.0	NM_029278	75416.0	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	161.89	141.46	97.12	170.03	153.48	113.33	173.21	159.18	116.79
Merged-chr17-85562667-1	chr17	85562167	85563167	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	55729.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.86	1.38	3.7	9.45	7.46	8.04	7.39	0.88	3.75
Merged-chr12-87406579-1	chr12	87406079	87407079	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18224.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	29.17	26.26	24.05	32.39	22.86	53.85	36.97	42.89	35.6
Merged-chr15-76511972-3	chr15	76511476	76512476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010046)	promoter-TSS (NM_010046)	18.0	NM_010046	13350.0	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	274.59	216.57	135.04	188.92	146.95	172.01	229.19	242.75	113.66
Merged-chr18-83870955-3	chr18	83870435	83871435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215627.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	8.58	2.76	8.32	6.07	5.13	6.43	10.56	4.42	2.5
Merged-chr6-72161896-3	chr6	72161373	72162373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-38676.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	171.04	104.14	106.37	144.39	76.51	122.18	134.14	105.24	70.57
Merged-chr16-49855891-1	chr16	49855391	49856391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	CpG	237.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	372.41	311.03	295.99	394.71	313.96	315.09	364.38	350.2	223.58
Merged-chrX-144234664-3	chrX	144234167	144235167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63123.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	12.01	7.37	1.85	21.59	7.0	11.25	6.34	4.86	6.87
Merged-chr6-17749179-3	chr6	17748693	17749693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083315)	promoter-TSS (NM_001083315)	23.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	13.73	18.89	12.95	31.71	16.33	22.51	34.85	28.3	12.49
Merged-chr19-21406979-1	chr19	21406479	21407479	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	65682.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.86	0.46	10.17	9.45	0.93	4.02	4.22	1.33	0.62
Merged-chr16-44724408-3	chr16	44723902	44724902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145972, exon 1 of 9)	exon (NM_145972, exon 1 of 9)	101.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	252.85	215.65	197.02	211.19	191.27	180.85	237.64	168.02	115.54
Merged-chr14-65834041-3	chr14	65833536	65834536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	-67.0	NM_028039	71988.0	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	24.03	32.72	22.2	20.24	13.06	25.72	22.18	24.32	21.23
Merged-chr4-136147812-3	chr4	136147312	136148312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	3990.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	128.14	79.25	107.29	202.42	103.56	114.14	176.38	117.17	81.81
Merged-chr7-35066149-3	chr7	35065650	35066650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9584.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	179.05	137.31	66.6	142.37	99.83	88.42	99.28	105.68	84.31
Merged-chr16-95831738-3	chr16	95831225	95832225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040485, exon 4 of 4)	non-coding (NR_040485, exon 4 of 4)	66988.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	28.03	15.67	12.95	43.18	12.13	27.33	20.07	11.5	11.24
Merged-chr5-92435276-3	chr5	92434775	92435775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183392)	promoter-TSS (NM_183392)	-76.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	184.77	137.77	121.17	182.85	169.34	155.93	200.68	187.04	78.69
Merged-chr4-154911406-3	chr4	154910908	154911908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12365.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	184.2	174.18	139.67	146.41	150.22	93.24	197.51	241.42	82.44
Merged-chr11-5789408-3	chr11	5788915	5789915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 1 of 12)	intron (NM_001146309, intron 1 of 12)	932.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	199.65	222.1	161.87	165.31	163.74	148.7	204.9	321.9	133.65
Merged-chr8-71632126-3	chr8	71631618	71632618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-1012.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	138.44	94.46	90.65	124.15	73.71	110.92	125.69	137.07	69.95
Merged-chr17-84101846-3	chr17	84101342	84102342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23182.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	131.57	123.03	110.99	124.82	130.16	134.23	114.07	100.37	83.69
Merged-chr4-128962512-3	chr4	128962013	128963013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172875)	promoter-TSS (NM_172875)	-58.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	34.32	16.13	24.05	36.43	19.13	28.13	50.7	21.22	10.62
Merged-chr13-113423991-3	chr13	113423461	113424461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78883.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	47.48	52.99	59.2	51.28	44.32	65.11	68.65	68.54	69.95
Merged-chr7-127912467-3	chr7	127911970	127912970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026370)	promoter-TSS (NM_026370)	-47.0	NM_026370	67773.0	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|MYST-1|Myst1	K(lysine) acetyltransferase 8	protein-coding	292.89	297.67	218.29	262.47	253.78	249.98	247.15	273.26	153.01
Merged-chr7-80018752-3	chr7	80018381	80019381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-5933.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	76.08	79.72	54.57	61.4	37.32	77.16	90.83	87.11	43.72
Merged-chr1-180365319-3	chr1	180364850	180365850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-34801.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	50.91	59.44	37.92	66.8	51.32	45.82	54.92	44.66	30.6
Merged-chr11-75348421-3	chr11	75347927	75348927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102611)	promoter-TSS (NM_001102611)	-6.0	NM_001102611	319822.0	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	71.51	61.75	61.05	78.27	85.37	65.91	96.11	104.79	44.97
Merged-chr4-132747810-3	chr4	132747310	132748310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	9361.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	131.57	129.48	79.55	118.08	88.17	106.9	97.17	137.51	52.46
Merged-chr8-4677459-3	chr8	4676973	4677973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64303.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	257.42	234.54	151.69	218.61	163.74	188.89	195.39	196.76	98.68
Merged-chr12-3871064-3	chr12	3870559	3871559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-8815.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	118.99	74.19	61.97	97.16	78.37	69.13	100.34	89.32	34.97
Merged-chr2-158175623-3	chr2	158175125	158176125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16383.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	329.5	215.65	156.32	338.71	271.04	208.98	260.88	272.82	107.42
Merged-chr16-38105643-3	chr16	38105142	38106142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-16382.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	35.47	35.02	54.57	34.41	27.99	25.72	52.81	35.82	35.6
Merged-chr14-16249363-3	chr14	16248891	16249891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	77.0	NM_001362432	59007.0	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	363.83	285.69	197.02	290.13	275.24	194.52	269.33	198.53	128.03
Merged-chr11-57645335-3	chr11	57644816	57645816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-126.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	55.49	59.9	86.02	71.52	62.51	80.38	69.71	68.09	46.22
Merged-chr7-127042468-3	chr7	127041948	127042948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145588)	promoter-TSS (NM_145588)	-28.0	NM_145588	110033.0	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	44.62	58.06	26.82	37.78	50.38	51.44	69.71	82.69	56.83
Merged-chr7-30280008-3	chr7	30279427	30280427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-167.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	80.66	100.91	123.02	89.74	109.16	135.84	77.1	87.99	49.34
Merged-chr2-60878068-4	chr2	60877459	60878459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	3479.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	287.17	325.77	153.54	277.31	288.3	178.44	318.97	337.82	153.63
Merged-chr12-85385887-3	chr12	85385386	85386386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11169.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	285.45	189.84	166.49	248.97	181.01	143.88	180.61	189.25	109.92
Merged-chr2-167102246-2	chr2	167101746	167102746	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36953.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	42.33	41.01	30.52	43.18	62.51	32.15	44.36	61.46	46.84
Merged-chr2-129373456-3	chr2	129372963	129373963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015474, intron 2 of 2)	intron (NR_015474, intron 2 of 2)	-2324.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	153.31	106.9	53.65	99.86	48.05	60.28	82.38	109.22	77.44
Merged-chr8-122906604-3	chr8	122906112	122907112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58238.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	29.75	37.78	9.25	41.83	35.92	20.09	26.4	35.82	13.74
Merged-chr1-87828496-3	chr1	87827975	87828975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	24795.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	21.74	23.96	15.72	44.53	36.39	25.72	22.18	21.22	18.74
Merged-chr1-191198108-3	chr1	191197568	191198568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14735.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	76.66	59.9	62.9	87.71	80.24	52.25	80.27	67.65	54.33
Merged-chr1-162565155-3	chr1	162564647	162565647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5368.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	89.24	53.91	35.15	89.06	49.92	70.73	67.6	74.73	39.97
Merged-chr8-36122776-5	chr8	36122259	36123259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172911, intron 3 of 5)	intron (NM_172911, intron 3 of 5)	27931.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	100.11	118.88	84.17	135.62	130.62	108.51	79.21	95.95	104.3
Merged-chr9-40709509-2	chr9	40709001	40710001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	23537.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	118.42	99.07	60.12	184.2	107.76	138.25	4.22	2.65	5.0
Merged-chr5-137307659-3	chr5	137307141	137308141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	33.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	188.78	168.65	163.72	149.79	134.35	122.98	155.26	134.86	99.92
Merged-chr10-34019711-3	chr10	34019211	34020211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025614)	promoter-TSS (NM_025614)	-95.0	NM_025614	66521.0	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	169.9	142.84	170.19	174.75	125.02	188.09	159.48	149.45	114.29
Merged-chr9-26997223-3	chr9	26996690	26997690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025862, intron 1 of 10)	ORR1A4|LTR|ERVL-MaLR	2359.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	9.15	14.28	12.95	15.52	10.26	17.68	14.79	15.92	16.86
Merged-chr2-154791372-3	chr2	154790865	154791865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001139511, exon 1 of 8)	5' UTR (NM_001139511, exon 1 of 8)	255.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	294.61	193.53	226.61	275.96	224.86	220.24	239.75	182.62	158.01
Merged-chr5-65486050-3	chr5	65485577	65486577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	6758.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	42.9	73.73	49.95	52.63	41.05	46.62	86.61	68.09	52.46
Merged-chr14-61684362-3	chr14	61683863	61684863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1990.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	128.14	149.75	110.07	141.02	102.63	108.51	135.19	143.26	83.06
Merged-chr9-120866899-1	chr9	120866399	120867399	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48351.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	16.59	3.69	5.55	5.4	7.46	5.63	1.06	0.44	3.75
Merged-chr9-57836939-3	chr9	57836436	57837436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2702.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	36.04	58.52	49.95	31.04	27.06	32.96	46.47	50.85	41.22
Merged-chr10-127592625-2	chr10	127592134	127593134	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 10 of 88)	intron (NM_008512, intron 10 of 88)	28514.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	92.1	70.04	69.37	140.34	76.97	117.35	139.42	115.85	69.95
Merged-chr19-43511208-1	chr19	43510708	43511708	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	13397.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	213.95	219.79	180.37	212.54	205.26	164.78	209.12	225.95	149.26
Merged-chr16-23280669-3	chr16	23280168	23281168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	L3|LINE|CR1	-9802.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	139.01	145.15	125.79	157.21	114.29	122.18	138.36	167.14	113.04
Merged-chr3-75293446-3	chr3	75292922	75293922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23344.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	43.48	47.0	34.22	35.76	17.73	28.94	28.52	20.78	26.85
Merged-chr3-30856175-3	chr3	30855729	30856729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001134385, exon 1 of 4)	5' UTR (NM_001134385, exon 1 of 4)	279.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	110.41	98.61	37.0	201.74	198.73	124.59	117.24	146.8	66.82
Merged-chr18-34624893-3	chr18	34624398	34625398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289606)	promoter-TSS (NM_001289606)	-35.0	NM_001361136	78656.0	Mm.45602	NM_030147	ENSMUSG00000003778	Brd8	2610007E11Rik|4432404P07Rik|SMAP	bromodomain containing 8	protein-coding	49.77	69.58	59.2	42.51	49.92	62.7	58.09	55.71	39.97
Merged-chr2-25608435-3	chr2	25607899	25608899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024616)	promoter-TSS (NM_001024616)	47.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	224.82	242.83	205.34	224.01	263.11	220.24	245.04	222.85	131.15
Merged-chr12-71807482-2	chr12	71806987	71807987	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-23581.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	19.45	27.65	11.1	40.48	48.52	30.54	32.74	34.05	28.73
Merged-chr1-13659981-3	chr1	13659459	13660459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	550.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	362.68	427.15	257.14	307.0	410.99	227.47	324.25	424.04	205.47
Merged-chr5-32854333-3	chr5	32853830	32854830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194340)	promoter-TSS (NM_194340)	-100.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	77.8	85.71	57.35	73.54	50.38	57.07	78.16	80.03	63.7
Merged-chr10-21200955-3	chr10	21200445	21201445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14001.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	12.01	9.68	3.7	9.45	1.4	4.82	9.51	8.4	2.5
Merged-chr16-91761980-3	chr16	91761497	91762497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	32626.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	66.36	76.95	37.0	49.93	42.92	49.03	48.58	57.04	33.72
Merged-chr14-54398908-5	chr14	54398415	54399415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	10557.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	181.91	208.74	142.44	225.36	204.8	173.62	243.98	229.93	112.42
Merged-chr18-14657582-3	chr18	14657064	14658064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	25350.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	196.21	282.46	155.39	156.53	172.61	114.14	257.71	335.6	138.02
Merged-chr2-167805156-3	chr2	167804670	167805670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113993.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	405.59	356.65	263.61	385.94	274.77	266.86	324.25	488.15	193.6
Merged-chr2-91082292-4	chr2	91081774	91082774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11959.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	290.03	317.94	221.06	315.77	271.04	236.31	275.66	324.55	169.25
Merged-chr5-110780626-3	chr5	110780119	110781119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347390)	promoter-TSS (NM_001347390)	-4.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	120.13	67.74	82.32	122.8	72.31	95.65	124.63	86.66	41.22
Merged-chr3-108850750-3	chr3	108850251	108851251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10249.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	58.92	43.77	16.65	42.51	15.86	12.86	42.25	51.73	26.23
Merged-chr17-35808135-3	chr17	35807651	35808651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13562.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	63.5	53.45	48.1	66.8	46.65	71.54	87.66	110.98	38.1
Merged-chr3-37748148-3	chr3	37747637	37748637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23777.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	39.47	36.4	37.92	33.74	23.33	51.44	19.01	22.55	25.61
Merged-chr17-65886065-2	chr17	65885564	65886564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009067)	promoter-TSS (NM_009067)	-309.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	108.69	176.94	149.84	125.5	183.34	118.96	126.74	203.84	94.93
Merged-chr18-9449472-2	chr18	9448953	9449953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	CpG	701.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	147.02	144.23	183.14	176.78	196.4	165.58	232.36	145.03	99.3
Merged-chr19-59345868-3	chr19	59345388	59346388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033222)	promoter-TSS (NM_001033222)	-108.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	149.88	130.4	144.29	129.55	96.57	128.61	128.85	82.24	65.58
Merged-chr13-3610123-3	chr13	3609623	3610623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360838, intron 1 of 19)	intron (NM_001360838, intron 1 of 19)	985.0	NM_134063	105203.0	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	183.63	216.57	178.52	138.32	163.74	127.8	174.27	206.93	126.78
Merged-chr4-139599124-3	chr4	139598615	139599615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-23779.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	226.53	154.82	103.59	197.69	147.42	96.45	201.73	206.49	75.57
Merged-chr2-114139993-2	chr2	114139498	114140498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	intron (NM_001290788, intron 16 of 33)	10572.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	59.49	41.93	41.62	73.54	39.65	18.49	4.22	4.42	5.0
Merged-chr7-109752265-3	chr7	109751801	109752801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-38.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	268.29	272.32	201.64	241.55	313.03	229.08	279.89	292.27	154.26
Merged-chr19-61140857-3	chr19	61140361	61141361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131953)	promoter-TSS (NR_131953)	-21.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	59.49	85.25	47.17	65.45	81.17	72.34	128.85	112.31	81.19
Merged-chr14-26994402-3	chr14	26993994	26994994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5868.0	NM_010420	15209.0	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	15.45	10.14	9.25	16.87	13.53	6.43	15.84	8.4	9.99
Merged-chr18-14783142-3	chr18	14782653	14783653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-92.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	99.54	95.84	103.59	157.21	179.61	154.33	178.5	138.4	63.7
Merged-chrX-139432861-3	chrX	139432378	139433378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47489.0	NM_175326	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	16.59	21.2	3.7	8.1	4.67	8.04	7.39	10.17	7.49
Merged-chr11-121743365-3	chr11	121742865	121743865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40938.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	220.81	180.17	86.95	245.6	163.28	133.43	181.66	176.87	98.68
Merged-chr5-140767907-3	chr5	140767412	140768412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	43785.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	69.22	64.97	59.2	91.76	59.25	98.06	78.16	55.71	43.09
Merged-chr3-148959525-3	chr3	148959043	148960043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4908.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	84.09	66.81	55.5	121.45	107.76	85.2	92.94	89.32	15.61
Merged-chr6-71200746-3	chr6	71200247	71201247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017399, intron 1 of 3)	intron (NM_017399, intron 1 of 3)	868.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	24.6	17.05	11.1	19.57	8.4	8.04	12.67	5.31	5.62
Merged-chr9-107580696-3	chr9	107580194	107581194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019750)	promoter-TSS (NM_019750)	25.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	219.67	189.38	116.54	189.6	149.75	158.35	211.24	221.08	129.28
Merged-chr1-87035924-3	chr1	87035393	87036393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	54035.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	52.06	70.04	86.02	60.05	75.11	86.81	44.36	93.3	42.47
Merged-chr7-24463004-3	chr7	24462498	24463498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011113, intron 1 of 6)	intron (NM_011113, intron 1 of 6)	515.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	32.04	52.07	59.2	74.89	73.24	139.86	68.65	36.7	49.34
Merged-chr13-24698856-3	chr13	24698332	24699332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080381, intron 13 of 14)	intron (NM_001080381, intron 13 of 14)	60184.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	33.18	32.72	34.22	35.09	27.52	34.56	39.08	6.63	9.99
Merged-chr3-135690898-3	chr3	135690411	135691411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	CpG	636.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	229.97	267.25	225.69	205.11	192.67	163.17	222.86	165.81	161.75
Merged-chrX-13072702-3	chrX	13072220	13073220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009481, intron 1 of 44)	CpG	1222.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	180.2	136.85	96.2	144.39	108.7	90.83	114.07	107.89	92.43
Merged-chr10-121571705-3	chr10	121571208	121572208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019786, intron 5 of 20)	intron (NM_019786, intron 5 of 20)	15086.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	70.36	55.75	31.45	51.28	41.05	35.37	88.72	61.9	33.72
Merged-chr19-12457888-1	chr19	12457388	12458388	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2891.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	132.14	117.96	101.74	126.85	113.83	104.49	168.99	185.27	79.32
Merged-chr6-122852906-3	chr6	122852426	122853426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	MTD|LTR|ERVL-MaLR	3231.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	98.97	142.84	100.82	120.1	102.17	78.77	92.94	113.19	87.43
Merged-chr11-54691412-3	chr11	54690923	54691923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175258, exon 26 of 28)	exon (NM_175258, exon 26 of 28)	95277.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	80.66	48.38	31.45	73.54	58.31	31.35	49.64	38.91	38.1
Merged-chr3-95977301-3	chr3	95976810	95977810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8200.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	41.76	44.24	30.52	58.7	44.32	52.25	38.02	34.05	38.72
Merged-chr12-84748311-3	chr12	84747809	84748809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24803.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	73.22	72.8	55.5	103.23	100.3	61.09	79.21	64.56	62.45
Merged-chr1-34410056-3	chr1	34409546	34410546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23153.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	29.75	23.96	12.95	24.96	24.26	24.11	30.63	16.36	3.75
Merged-chr13-94743673-3	chr13	94743156	94744156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45287.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	49.77	60.82	45.32	58.7	46.18	40.19	103.51	81.36	35.6
Merged-chr17-13007817-3	chr17	13007297	13008297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-42.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	216.24	158.05	163.72	188.25	167.01	152.72	197.51	150.34	108.67
Merged-chr6-3399534-3	chr6	3399027	3400027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010156)	promoter-TSS (NM_010156)	44.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	46.91	85.71	48.1	66.12	95.17	55.46	70.76	71.63	34.35
Merged-chr8-35625882-3	chr8	35625391	35626391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-36871.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	33.75	39.17	23.12	29.69	17.73	25.72	68.65	59.69	28.1
Merged-chr2-61579567-3	chr2	61579069	61580069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011529, intron 1 of 7)	intron (NM_011529, intron 1 of 7)	983.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	203.65	266.79	71.22	232.78	206.2	81.99	241.87	292.27	96.8
Merged-chr6-129350135-3	chr6	129349627	129350627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-117.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	109.26	106.9	79.55	89.74	90.5	98.87	127.8	152.11	64.95
Merged-chr17-47760211-3	chr17	47759708	47760708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	22277.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	62.35	44.7	28.67	89.74	70.91	61.09	69.71	56.6	21.86
Merged-chr7-29518650-3	chr7	29518138	29519138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13178.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	29.75	16.13	18.5	34.41	20.53	25.72	38.02	19.01	21.23
Merged-chr1-155098145-3	chr1	155097635	155098635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	1501.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	402.15	466.77	255.29	390.66	374.14	276.5	316.86	408.12	216.09
Merged-chr14-8214080-3	chr14	8213600	8214600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027782)	promoter-TSS (NM_027782)	19.0	NM_027782	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	156.17	125.33	144.29	198.37	134.82	113.33	184.83	108.77	81.19
Merged-chr10-127289378-3	chr10	127288838	127289838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-320.0	NM_033072	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	497.69	370.01	264.54	519.53	342.42	258.02	377.06	447.47	145.51
Merged-chr3-79173528-3	chr3	79173032	79174032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27657.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	191.07	204.13	100.82	182.17	167.01	120.57	152.09	226.83	64.95
Merged-chr3-105721990-3	chr3	105721509	105722509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16551.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	89.24	76.49	34.22	99.86	67.18	44.21	64.43	69.86	28.1
Merged-chr10-81408987-3	chr10	81408481	81409481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-594.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	203.08	124.87	80.47	268.54	179.61	172.01	217.57	210.91	91.81
Merged-chr13-85189390-3	chr13	85188882	85189882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347588)	promoter-TSS (NM_001347588)	-3.0	NM_001347587	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	140.73	128.56	99.89	128.87	135.75	146.29	115.12	97.28	73.07
Merged-chr2-30416089-3	chr2	30415581	30416581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	31.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	253.42	175.56	148.92	228.73	170.28	205.77	198.56	213.12	148.01
Merged-chr7-122260288-3	chr7	122259774	122260774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-28851.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	62.35	90.77	69.37	86.36	72.31	66.71	70.76	77.38	81.19
Merged-chr3-75557463-3	chr3	75556960	75557960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019745)	promoter-TSS (NM_019745)	-33.0	NM_009250	20713.0	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	30.89	19.35	35.15	24.29	23.33	29.74	34.85	37.58	15.61
Merged-chr15-59041223-3	chr15	59040709	59041709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40817.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	22.88	14.28	12.95	26.99	9.33	9.65	13.73	8.84	5.62
Merged-chr7-16738358-3	chr7	16737857	16738857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198613)	promoter-TSS (NM_198613)	-87.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	28.03	32.72	43.47	47.9	23.33	33.76	38.02	32.28	32.48
Merged-chr8-116581465-3	chr8	116580975	116581975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 5 of 6)	intron (NM_029441, intron 5 of 6)	76460.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	116.13	104.6	87.87	87.71	74.17	69.13	198.56	160.95	70.57
Merged-chr18-82762834-3	chr18	82762363	82763363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3824.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	60.64	31.33	49.02	43.86	28.92	41.8	69.71	41.56	40.59
Merged-chr5-137628917-3	chr5	137628409	137629409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168652)	promoter-TSS (NM_001168652)	-214.0	NM_001168652	231798.0	Mm.200763	NM_146164	ENSMUSG00000093445	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	217.38	212.88	143.37	193.64	119.43	135.84	186.94	246.29	118.04
Merged-chr11-26600833-3	chr11	26600339	26601339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6919.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	69.79	61.75	47.17	64.77	53.18	57.87	101.39	93.3	39.97
Merged-chr13-42367810-3	chr13	42367304	42368304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66328.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	41.76	42.85	63.82	38.46	36.85	38.58	44.36	45.1	48.09
Merged-chr7-113612791-3	chr7	113612267	113613267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-47780.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	54.92	42.85	42.55	51.28	55.51	40.19	44.36	39.8	25.61
Merged-chr15-76327431-3	chr15	76326948	76327948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175399)	promoter-TSS (NM_175399)	51.0	NM_175399	109075.0	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	116.13	117.96	114.69	116.73	111.96	123.78	109.84	124.69	76.19
Merged-chr8-69184285-3	chr8	69183784	69184784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24762.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	5.15	1.38	5.55	13.49	10.26	13.66	3.17	5.75	10.62
Merged-chr16-91740394-1	chr16	91739894	91740894	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11023.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	50.34	58.06	29.6	56.68	51.78	40.19	43.3	44.66	36.22
Merged-chr11-103115417-3	chr11	103114911	103115911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-914.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	350.1	331.3	252.51	352.2	318.63	283.74	354.88	353.73	146.76
Merged-chr12-55481106-2	chr12	55480615	55481615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11532.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	2.86	4.15	2.77	7.42	0.47	2.41	1.06	0.88	1.25
Merged-chr5-115542894-3	chr5	115542403	115543403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-16564.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	18.88	12.9	34.22	17.54	6.53	19.29	12.67	4.42	19.98
Merged-chr1-152888017-3	chr1	152887532	152888532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160257, intron 1 of 23)	intron (NM_001160257, intron 1 of 23)	14613.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	24.03	38.71	25.9	24.29	20.53	29.74	28.52	28.3	24.36
Merged-chr10-111010002-3	chr10	111009530	111010530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-21.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	316.35	220.72	268.24	293.5	240.25	198.54	258.77	191.46	157.38
Merged-chr11-21046428-3	chr11	21045935	21046935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44889.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	156.74	126.72	62.9	137.64	112.43	119.76	153.15	166.7	83.69
Merged-chr5-122702406-3	chr5	122701900	122702900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5144.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	147.02	101.37	93.42	157.21	73.71	114.94	161.6	121.6	94.93
Merged-chr2-159646808-3	chr2	159646301	159647301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-300540.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	24.6	24.88	15.72	18.89	18.66	17.68	32.74	22.55	24.98
Merged-chr11-117986823-3	chr11	117986324	117987324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133757)	promoter-TSS (NM_133757)	-33.0	NM_133757	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	204.22	193.99	215.51	230.08	185.67	179.24	181.66	141.05	121.78
Merged-chr11-83291669-3	chr11	83291185	83292185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028363)	promoter-TSS (NR_028363)	-14.0	NR_028363	613254.0	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	52.63	57.14	40.7	65.45	79.77	56.27	63.37	69.86	39.97
Merged-chr4-101356791-3	chr4	101356270	101357270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040708)	promoter-TSS (NR_040708)	-522.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	363.83	302.74	280.26	355.58	288.3	258.02	377.06	345.77	212.34
Merged-chr5-21645807-3	chr5	21645280	21646280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177076)	promoter-TSS (NM_177076)	-175.0	NM_177076	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	22.88	23.04	33.3	28.34	19.13	29.74	40.14	31.39	38.1
Merged-chr16-90279224-3	chr16	90278730	90279730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	5256.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	26.89	24.42	22.2	33.74	12.13	16.08	21.12	15.48	11.24
Merged-chr12-8313368-3	chr12	8312834	8313834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021429)	promoter-TSS (NM_021429)	-99.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	96.68	124.41	55.5	120.1	135.29	108.51	116.18	91.09	42.47
Merged-chr6-83349451-3	chr6	83348946	83349946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175277)	promoter-TSS (NM_175277)	-38.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	58.92	39.63	34.22	70.17	41.05	50.64	46.47	41.12	19.36
Merged-chr5-135744273-3	chr5	135743771	135744771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172541)	promoter-TSS (NM_172541)	-99.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	63.5	64.05	43.47	64.77	50.38	42.6	70.76	76.05	33.72
Merged-chr13-110568708-3	chr13	110568235	110569235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173691.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	217.38	248.82	152.62	203.09	161.88	147.9	212.29	252.04	103.67
Merged-chr8-70673681-3	chr8	70673166	70674166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015816, intron 1 of 4)	CpG	435.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	300.33	304.58	265.46	308.35	300.43	262.04	337.98	366.11	163.0
Merged-chr1-53823911-3	chr1	53823390	53824390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-25534.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	181.91	176.02	85.1	159.91	114.76	105.3	132.02	156.53	116.79
Merged-chr9-123869500-3	chr9	123868989	123869989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7460.0	NM_011798	23832.0	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	81.23	93.54	60.12	90.41	60.18	82.79	121.46	107.45	58.08
Merged-chr8-88666567-3	chr8	88666067	88667067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	19220.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	115.55	118.88	144.29	127.52	65.31	82.79	121.46	160.51	64.33
Merged-chr8-61487877-3	chr8	61487372	61488372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145595, exon 1 of 5)	exon (NM_145595, exon 1 of 5)	138.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	239.12	358.03	197.94	238.18	349.88	243.55	287.28	304.21	152.38
Merged-chr7-120635177-3	chr7	120634639	120635639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-50.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	98.97	140.54	114.69	124.15	130.16	134.23	142.59	123.36	91.81
Merged-chr6-83660570-1	chr6	83660070	83661070	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4454.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	43.48	58.06	62.9	68.82	101.23	86.81	13.73	0.44	4.37
Merged-chrX-106633719-1	chrX	106633219	106634219	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-30040.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	17.16	11.06	14.8	12.14	10.26	17.68	11.62	5.31	16.24
Merged-chr2-11300562-3	chr2	11300070	11301070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008859, exon 18 of 18)	3' UTR (NM_008859, exon 18 of 18)	-38919.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	24.03	24.42	20.35	25.64	17.26	19.29	22.18	27.86	26.23
Merged-chr3-138528019-3	chr3	138527510	138528510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	CpG	742.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	125.85	67.74	83.25	123.47	63.45	57.07	159.48	57.92	58.08
Merged-chr7-127014556-3	chr7	127014029	127015029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080638)	promoter-TSS (NM_080638)	65.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	267.15	195.83	185.92	190.27	153.01	204.16	185.89	193.67	159.25
Merged-chr2-156196754-3	chr2	156196286	156197286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172674, exon 1 of 18)	5' UTR (NM_172674, exon 1 of 18)	139.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	520.57	319.32	234.01	493.89	335.89	261.23	390.79	313.5	164.25
Merged-chr10-8777723-3	chr10	8777249	8778249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	108321.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	100.68	91.24	70.3	120.1	83.97	98.06	99.28	82.24	73.07
Merged-chr4-129829986-3	chr4	129829474	129830474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9266.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	121.28	164.96	71.22	118.08	90.04	94.85	175.33	178.19	69.32
Merged-chr11-114727386-3	chr11	114726926	114727926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034878)	promoter-TSS (NM_001034878)	14.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	21.74	14.75	9.25	25.64	20.99	12.06	15.84	12.38	3.75
Merged-chr14-7994228-3	chr14	7993727	7994727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007870)	promoter-TSS (NM_007870)	-45.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	29.75	36.86	46.25	30.36	16.33	32.15	28.52	25.2	8.12
Merged-chr5-99336619-3	chr5	99336106	99337106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83679.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	294.04	268.64	110.07	286.08	220.66	160.76	255.6	299.35	113.04
Merged-chr2-128698853-3	chr2	128698354	128699354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008587)	promoter-TSS (NM_008587)	-61.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	90.38	63.59	61.05	107.95	56.45	85.2	107.73	98.6	38.1
Merged-chr5-139379183-3	chr5	139378677	139379677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	-1462.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	92.67	65.43	61.05	113.35	81.17	87.61	113.01	80.03	38.72
Merged-chr2-49411864-3	chr2	49411359	49412359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39627.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	18.88	22.12	12.95	18.22	17.26	32.15	24.29	16.36	19.98
Merged-chr3-27202943-3	chr3	27202462	27203462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	19958.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	111.55	123.03	72.15	103.91	101.7	78.77	89.78	101.7	54.33
Merged-chr10-77969871-3	chr10	77969379	77970379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-7.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	243.12	177.86	186.84	230.75	182.4	213.0	296.79	293.16	158.01
Merged-chr1-36572381-1	chr1	36571881	36572881	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14000.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	135.58	149.75	200.71	161.26	93.77	163.97	181.66	197.21	119.91
Merged-chr3-126625699-3	chr3	126625195	126626195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	28744.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	232.25	250.21	147.99	215.91	237.92	133.43	182.72	221.53	100.55
Merged-chr16-44726048-3	chr16	44725529	44726529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	1728.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	54.92	62.67	18.5	31.71	47.58	45.01	46.47	60.13	31.23
Merged-chr14-79481647-3	chr14	79481146	79482146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018765)	promoter-TSS (NM_018765)	-378.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	330.07	308.26	334.83	301.6	263.11	239.53	333.75	290.06	216.09
Merged-chr14-87190873-3	chr14	87190389	87191389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49665.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	11.44	11.52	19.42	8.1	14.46	8.84	23.24	17.69	15.61
Merged-chr9-121675145-1	chr9	121674645	121675645	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29884.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	4.58	0.92	6.47	1.35	2.33	3.22	27.46	15.92	11.24
Merged-chr3-87930229-3	chr3	87929724	87930724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177663)	promoter-TSS (NM_177663)	-29.0	NM_153562	229503.0	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	362.68	258.96	246.04	271.24	172.14	226.67	258.77	213.12	134.27
Merged-chr12-72760475-3	chr12	72759976	72760976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008910)	promoter-TSS (NM_008910)	-735.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	343.8	390.74	227.54	346.13	411.93	251.59	325.31	378.05	176.12
Merged-chr8-3221169-3	chr8	3220677	3221677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	CpG	58440.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	38.9	45.62	65.67	26.31	26.59	30.54	29.57	24.76	28.73
Merged-chr2-164497471-3	chr2	164496994	164497994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	-31.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	66.36	65.43	41.62	63.42	52.25	65.91	65.48	71.63	34.35
Merged-chr2-61594138-2	chr2	61593647	61594647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_149323, exon 2 of 10)	non-coding (NR_149323, exon 2 of 10)	1050.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	336.37	399.96	206.26	273.26	245.85	232.29	301.01	386.45	166.12
Merged-chr3-54692713-3	chr3	54692210	54693210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019995)	promoter-TSS (NM_019995)	-105.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	60.64	65.89	61.97	59.38	44.32	79.58	67.6	68.54	46.84
Merged-chr15-97786830-3	chr15	97786333	97787333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	2468.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	177.91	219.33	158.17	244.92	226.26	208.18	190.11	228.16	116.79
Merged-chr2-172401285-3	chr2	172400775	172401775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	7481.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	122.42	80.64	36.07	101.88	67.64	81.99	63.37	68.98	69.32
Merged-chrX-109191134-3	chrX	109190638	109191638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5618.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	146.45	145.15	95.27	136.29	146.95	136.64	139.42	170.68	62.45
Merged-chr9-61022006-3	chr9	61021502	61022502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	4933.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	116.13	147.91	100.82	143.04	117.09	114.14	136.25	145.03	101.17
Merged-chr2-59346717-3	chr2	59346219	59347219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 17 of 20)	intron (NM_175464, intron 17 of 20)	39963.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	59.49	34.1	37.0	66.12	50.85	52.25	60.2	44.66	36.22
Merged-chr18-64921030-3	chr18	64920522	64921522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	33266.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.72	10.14	1.85	9.45	2.8	2.41	7.39	4.86	3.12
Merged-chr3-135439366-3	chr3	135438871	135439871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	245.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	465.08	380.15	369.06	399.43	267.31	278.11	385.51	269.28	202.35
Merged-chr7-28312105-3	chr7	28311626	28312626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-80.0	NM_025616	66525.0	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	28.03	23.04	46.25	18.22	17.73	24.92	32.74	33.6	23.11
Merged-chr11-87122077-3	chr11	87121582	87122582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025377, exon 4 of 4)	3' UTR (NM_025377, exon 4 of 4)	-4993.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	40.62	46.08	38.85	37.78	42.92	49.83	49.64	63.67	41.84
Merged-chr2-26550023-3	chr2	26549523	26550523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31033.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	13.73	7.83	9.25	10.12	8.86	11.25	9.51	6.19	1.25
Merged-chr15-75748424-3	chr15	75747920	75748920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-498.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	5.15	0.46	1.85	2.02	0.47	0.0	2.11	0.44	3.75
Merged-chr15-78815906-3	chr15	78815403	78816403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12861.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	45.19	47.92	32.37	36.43	30.79	39.39	27.46	38.91	21.23
Merged-chr8-31149879-3	chr8	31149387	31150387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199988)	promoter-TSS (NM_001199988)	-429.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	141.87	273.71	147.07	117.4	197.33	173.62	301.01	373.19	166.75
Merged-chr15-8634981-3	chr15	8634479	8635479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75828.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	157.89	145.61	64.75	143.04	80.24	79.58	171.1	195.88	96.18
Merged-chr2-154613454-3	chr2	154612939	154613939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	71.0	NM_199304	228807.0	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	195.07	153.44	183.14	250.32	204.33	213.81	197.51	183.06	124.28
Merged-chrX-13655241-3	chrX	13654739	13655739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 5 of 26)	intron (NM_001284503, intron 5 of 26)	-6124.0	NM_175669	319200.0	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	44.05	60.82	33.3	62.07	40.59	43.4	46.47	40.24	39.97
Merged-chr7-27861109-3	chr7	27860603	27861603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024726, intron 1 of 4)	intron (NM_001024726, intron 1 of 4)	518.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	41.76	37.32	78.62	54.65	42.45	98.06	60.2	43.33	59.95
Merged-chr7-44304980-1	chr7	44304480	44305480	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009131, exon 4 of 4)	exon (NM_009131, exon 4 of 4)	1979.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	155.03	146.99	145.22	118.75	91.44	110.12	172.16	187.92	109.92
Merged-chr19-24997368-3	chr19	24996888	24997888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2141.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	42.9	69.58	32.37	47.9	34.52	44.21	57.03	48.64	56.83
Merged-chr19-26697291-3	chr19	26696787	26697787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 22 of 32)	intron (NM_011416, intron 22 of 32)	-50878.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	33.18	24.88	12.95	30.36	14.93	18.49	16.9	10.61	2.5
Merged-chr17-71127644-3	chr17	71127142	71128142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010867)	TTS (NM_010867)	-55890.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	122.42	77.41	82.32	128.87	97.03	109.32	89.78	95.51	59.95
Merged-chr7-19119787-3	chr7	19119281	19120281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175530)	promoter-TSS (NM_175530)	-78.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	22.88	27.19	24.05	24.29	18.66	19.29	36.97	25.65	14.99
Merged-chr2-128393674-3	chr2	128393169	128394169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	35682.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	347.81	290.75	151.69	327.24	313.96	242.74	323.19	405.91	169.25
Merged-chr2-164815549-3	chr2	164815055	164816055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178375, intron 1 of 1)	intron (NM_178375, intron 1 of 1)	-7131.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	22.31	12.9	7.4	8.77	10.73	1.61	11.62	8.4	11.87
Merged-chr1-134065450-3	chr1	134064960	134065960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13695.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	185.92	145.15	74.0	150.46	101.23	116.55	110.9	137.51	91.18
Merged-chr11-46063257-3	chr11	46062750	46063750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	7266.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	22.88	16.59	12.02	31.71	10.73	8.04	20.07	12.38	13.74
Merged-chr7-84551294-1	chr7	84550794	84551794	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22340.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	13.16	15.21	1.85	24.29	37.32	11.25	24.29	31.39	18.74
Merged-chr8-69919201-3	chr8	69918705	69919705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 3 of 12)	intron (NM_001286450, intron 3 of 12)	-16647.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	58.92	48.84	23.12	31.04	30.32	15.27	36.97	42.01	18.74
Merged-chr4-128839932-3	chr4	128839426	128840426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33814.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	193.35	172.33	83.25	187.57	176.34	180.85	151.03	126.9	99.3
Merged-chr9-89267285-3	chr9	89266764	89267764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55880.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	121.85	148.83	84.17	206.46	156.28	170.4	134.14	193.23	59.95
Merged-chr12-84218903-3	chr12	84218405	84219405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163501)	promoter-TSS (NM_001163501)	-24.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	386.71	285.69	257.14	396.73	318.16	253.19	246.09	233.02	152.38
Merged-chr2-131352904-3	chr2	131352403	131353403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-11.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	33.75	23.5	28.67	43.86	32.66	37.78	31.69	30.95	8.74
Merged-chr16-91001313-3	chr16	91000813	91001813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	9782.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	203.65	169.11	116.54	165.31	104.03	115.75	152.09	165.37	89.31
Merged-chr12-98746905-3	chr12	98746421	98747421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160107)	promoter-TSS (NM_001160107)	-47.0	NM_001160107	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	130.43	112.43	74.92	104.58	100.77	65.91	163.71	111.87	73.07
Merged-chr11-34066829-3	chr11	34066316	34067316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	ORR1F|LTR|ERVL-MaLR	19888.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	32.61	40.09	49.02	47.23	38.25	51.44	50.7	38.47	31.85
Merged-chr11-83604824-3	chr11	83604320	83605320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-11733.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	32.04	23.5	24.05	97.83	68.11	99.67	33.8	42.89	45.59
Merged-chr15-96461029-3	chr15	96460542	96461542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-199.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	232.25	183.39	184.07	226.71	189.4	174.42	197.51	135.3	109.92
Merged-chr15-102203214-1	chr15	102202714	102203714	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-431.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	92.67	110.13	127.64	97.83	103.56	125.39	117.24	110.54	104.92
Merged-chr11-3185106-3	chr11	3184601	3185601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	8362.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	58.35	76.49	127.64	96.48	97.03	136.64	116.18	85.34	149.26
Merged-chr8-13160898-3	chr8	13160390	13161390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	1729.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	141.3	181.09	61.05	143.04	101.7	77.16	172.16	189.25	67.45
Merged-chr15-73162135-3	chr15	73161642	73162642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	22805.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	9.15	10.14	5.55	20.24	12.6	6.43	20.07	13.71	9.99
Merged-chr6-143307552-3	chr6	143307051	143308051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61663.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	29.75	14.28	22.2	16.87	14.46	17.68	28.52	16.8	10.62
Merged-chr11-84179577-3	chr11	84179060	84180060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12084.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	94.96	60.36	48.1	98.51	51.32	52.25	87.66	52.62	24.98
Merged-chr5-36560395-1	chr5	36559895	36560895	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	22002.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	1.14	2.3	0.0	2.02	0.0	0.0	88.72	70.75	49.96
Merged-chr11-109362730-3	chr11	109362263	109363263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010303)	promoter-TSS (NM_010303)	-31.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	579.49	542.8	416.23	543.15	453.45	338.39	446.77	540.77	234.2
Merged-chr1-60098297-3	chr1	60097804	60098804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199061)	promoter-TSS (NM_001199061)	57.0	NM_001285463	241066.0	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	133.86	109.67	129.49	112.0	95.63	91.63	120.41	118.06	94.93
Merged-chr18-76944219-3	chr18	76943727	76944727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039201)	promoter-TSS (NM_001039201)	112.0	NM_001039202	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	156.74	205.51	173.89	155.86	130.16	187.28	199.62	159.18	136.77
Merged-chr4-32239125-1	chr4	32238625	32239625	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178310.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	116.7	88.01	76.77	113.35	85.37	113.33	71.82	35.82	32.48
Merged-chr4-48043418-3	chr4	48042853	48043853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1952.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	391.28	342.82	277.49	379.87	361.54	232.29	370.72	395.74	182.99
Merged-chr7-143649648-3	chr7	143649147	143650147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023680)	promoter-TSS (NM_023680)	17.0	NM_001311145	79202.0	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	10.3	17.51	22.2	9.45	15.39	12.86	19.01	19.9	14.99
Merged-chr6-83273943-3	chr6	83273439	83274439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166067, intron 13 of 24)	intron (NM_001166067, intron 13 of 24)	36564.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	12.01	9.68	9.25	16.87	11.2	11.25	10.56	4.42	2.5
Merged-chr1-85703823-3	chr1	85703326	85704326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 17 of 19)	intron (NM_013673, intron 17 of 19)	32780.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	249.42	230.85	151.69	228.05	181.94	204.16	252.43	244.96	142.39
Merged-chr9-119248144-3	chr9	119247624	119248624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-16432.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	25.17	30.87	37.0	21.59	20.99	49.83	22.18	27.41	19.98
Merged-chr14-57826187-3	chr14	57825673	57826673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198605)	promoter-TSS (NM_198605)	-10.0	NM_198605	219114.0	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	152.17	165.42	170.19	155.86	154.88	201.75	216.52	201.63	131.15
Merged-chr10-120882518-3	chr10	120882035	120883035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	16436.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	27.46	16.13	5.55	25.64	20.06	18.49	15.84	15.92	9.37
Merged-chr14-119007596-3	chr14	119007111	119008111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 33 of 38)	ORR1D2|LTR|ERVL-MaLR	69679.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	57.78	73.26	39.77	68.82	68.58	59.48	68.65	63.67	52.46
Merged-chr1-106375201-3	chr1	106374699	106375699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	Lx7|LINE|L1	171432.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	47.48	23.5	14.8	64.77	42.92	51.44	35.91	26.09	14.99
Merged-chr12-27312358-1	chr12	27311858	27312858	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30360.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	7.44	10.6	9.25	23.62	28.92	21.7	0.0	0.88	3.12
Merged-chr16-43380106-3	chr16	43379608	43380608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	40088.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	41.19	66.81	32.37	36.43	38.25	46.62	49.64	53.06	41.22
Merged-chr17-6779081-3	chr17	6778583	6779583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	3697.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	194.5	229.93	120.24	221.98	183.34	127.8	164.76	251.15	116.16
Merged-chr3-89774619-3	chr3	89774127	89775127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027315, intron 1 of 12)	intron (NM_027315, intron 1 of 12)	1018.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	189.92	174.64	86.02	144.39	125.49	107.71	191.17	244.08	95.55
Merged-chr2-73911343-3	chr2	73910841	73911841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175015)	promoter-TSS (NM_175015)	-15.0	NM_001301722	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	181.91	146.99	141.52	173.4	151.15	187.28	218.63	142.38	139.27
Merged-chr2-44274728-3	chr2	44274240	44275240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-209416.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	106.4	148.37	59.2	153.16	175.87	111.73	155.26	172.45	81.81
Merged-chr1-51934729-3	chr1	51934217	51935217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18739.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	56.63	57.6	40.7	64.77	47.58	51.44	50.7	37.14	46.84
Merged-chr13-35741294-3	chr13	35740800	35741800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-102.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	69.22	42.39	60.12	57.35	29.39	37.78	73.93	24.76	20.61
Merged-chr17-71165181-3	chr17	71164673	71165673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18359.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	98.39	106.44	77.7	93.11	122.23	73.14	85.55	83.13	88.68
Merged-chr11-34010970-3	chr11	34010480	34011480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17787.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	124.71	114.27	118.39	118.08	92.84	113.33	105.62	103.02	98.05
Merged-chr19-5041335-3	chr19	5040833	5041833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134155)	promoter-TSS (NM_134155)	-21.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	199.65	169.11	82.32	116.73	87.24	147.09	109.84	118.5	86.18
Merged-chr19-5875304-3	chr19	5874793	5875793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026169)	promoter-TSS (NM_026169)	-85.0	NM_026169	67457.0	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	48.62	41.01	62.9	50.6	28.92	32.96	47.53	37.58	36.22
Merged-chr9-48561073-2	chr9	48560566	48561566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44057.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	47.48	29.03	21.27	34.41	27.99	10.45	1.06	4.86	1.25
Merged-chr16-78376891-3	chr16	78376391	78377391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009770)	promoter-TSS (NM_009770)	-81.0	NM_009770	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	108.12	62.67	22.2	126.17	67.64	44.21	72.88	59.25	26.85
Merged-chr4-3647233-3	chr4	3646736	3647736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9270.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	155.6	135.47	81.4	179.47	116.16	87.61	155.26	164.49	86.18
Merged-chr5-53998726-1	chr5	53998226	53999226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001081103, exon 1 of 12)	5' UTR (NM_001081103, exon 1 of 12)	203.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	158.46	129.94	103.59	97.16	81.17	87.61	166.88	60.13	80.56
Merged-chr4-55386964-3	chr4	55386443	55387443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 9 of 9)	RMER10B|LTR|ERVL	31899.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	34.9	36.86	34.22	40.48	28.46	36.97	32.74	33.6	46.84
Merged-chr2-180726886-3	chr2	180726444	180727444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	1605.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	57.21	55.29	80.47	64.77	52.25	81.18	77.1	57.92	48.71
Merged-chr12-81971996-3	chr12	81971497	81972497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018814, intron 20 of 35)	intron (NM_018814, intron 20 of 35)	111967.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	133.29	192.15	106.37	136.29	203.86	169.6	143.64	147.68	90.56
Merged-chr7-28209150-3	chr7	28208651	28209651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	28835.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	38.33	54.83	36.07	56.0	60.65	73.14	87.66	72.96	41.84
Merged-chr19-37174403-2	chr19	37173891	37174891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	548.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	131.0	131.78	123.94	136.29	103.56	139.06	164.76	148.57	105.55
Merged-chr2-38486123-3	chr2	38485615	38486615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25582.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	33.18	35.94	50.87	49.25	26.59	40.99	38.02	24.76	49.96
Merged-chr13-107022522-3	chr13	107022019	107023019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	-51.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	44.05	46.54	35.15	57.35	47.12	55.46	55.98	40.24	41.22
Merged-chr14-17660909-3	chr14	17660413	17661413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-47.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	254.56	254.35	215.51	200.39	220.66	213.81	162.65	152.11	132.4
Merged-chr16-93818938-3	chr16	93818437	93819437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-13184.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	235.11	283.84	198.87	241.55	257.51	172.81	230.25	312.61	148.01
Merged-chr3-152395948-3	chr3	152395471	152396471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287139)	promoter-TSS (NM_001287139)	-32.0	NM_001080755	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	194.5	106.44	101.74	211.86	112.43	118.96	181.66	86.22	78.69
Merged-chr17-51221294-3	chr17	51220818	51221818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41966.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	231.68	248.82	116.54	195.67	178.67	150.31	226.02	261.76	154.88
Merged-chr2-90577809-3	chr2	90577395	90578395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2752.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	209.37	171.87	124.87	182.85	115.23	122.18	157.37	175.1	114.91
Merged-chr9-107771099-3	chr9	107770597	107771597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148930)	promoter-TSS (NM_148930)	-95.0	NM_001359525	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	252.85	258.5	147.07	199.04	252.38	179.24	251.37	265.74	166.75
Merged-chr4-117254106-3	chr4	117253627	117254627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1787.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	34.9	35.48	18.5	45.21	22.86	36.17	19.01	33.16	19.36
Merged-chrX-53269861-3	chrX	53269364	53270364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166365)	promoter-TSS (NM_001166365)	-59.0	NM_001166583	78755.0	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	4.0	10.6	9.25	4.72	7.0	19.29	9.51	7.52	2.5
Merged-chr18-61108682-3	chr18	61108178	61109178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	3106.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	108.69	80.64	74.92	125.5	62.05	88.42	119.35	89.32	71.2
Merged-chr3-69004951-3	chr3	69004434	69005434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026641)	promoter-TSS (NM_026641)	196.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	141.87	215.65	184.07	163.96	134.82	99.67	148.92	145.47	113.66
Merged-chr5-147861134-3	chr5	147860626	147861626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	498.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	180.77	264.03	227.54	159.23	231.85	235.51	219.69	241.87	143.02
Merged-chr1-176797453-1	chr1	176796953	176797953	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	9671.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	5.15	6.91	0.0	4.05	3.73	6.43	6.34	6.63	4.37
Merged-chr11-53775968-3	chr11	53775482	53776482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159396, exon 9 of 10)	exon (NM_001159396, exon 9 of 10)	5509.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	35.47	23.96	34.22	22.27	24.26	38.58	45.42	43.33	18.74
Merged-chr4-12424211-3	chr4	12423705	12424705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-252190.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	21.74	41.47	27.75	34.41	29.39	23.31	42.25	31.84	28.1
Merged-chr8-105455462-3	chr8	105454940	105455940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033371, intron 7 of 10)	intron (NM_001033371, intron 7 of 10)	15982.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	72.08	70.5	75.85	81.64	62.05	40.19	98.23	84.01	36.22
Merged-chr13-49652914-3	chr13	49652413	49653413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073167)	promoter-TSS (NR_073167)	-165.0	NM_001271397	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	97.25	134.09	115.62	85.01	142.75	103.69	158.43	166.25	64.95
Merged-chr9-64179324-3	chr9	64178813	64179813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183316)	promoter-TSS (NM_183316)	16.0	NM_183316	330959.0	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	184.2	182.01	147.07	157.88	147.88	127.8	165.82	178.64	103.67
Merged-chr2-181365423-3	chr2	181364923	181365923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	0.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	199.65	193.99	162.79	180.82	168.88	155.93	188.0	183.5	102.42
Merged-chr8-57512371-1	chr8	57511871	57512871	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008252, intron 1 of 4)	CpG	528.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	272.3	219.79	194.24	272.59	308.83	176.83	205.96	262.21	116.79
Merged-chr2-75705329-3	chr2	75704804	75705804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	-641.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	234.54	144.23	119.32	199.04	185.67	180.85	272.5	297.14	177.37
Merged-chr14-30951362-3	chr14	30950857	30951857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011849)	promoter-TSS (NM_011849)	-20.0	NM_001308328	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	141.87	102.75	70.3	128.87	125.96	101.28	138.36	105.68	78.69
Merged-chr10-99182343-3	chr10	99181847	99182847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	74212.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	290.03	268.18	171.12	307.0	243.98	155.93	278.83	342.24	159.25
Merged-chr10-115362351-3	chr10	115361845	115362845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359470)	promoter-TSS (NM_001359470)	-78.0	NM_001359471	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	129.86	137.77	112.84	132.24	132.49	113.33	128.85	145.47	115.54
Merged-chr15-78947840-3	chr15	78947318	78948318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138579)	promoter-TSS (NM_138579)	94.0	NM_001039155	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	6.29	1.84	0.0	12.14	3.73	1.61	2.11	1.77	2.5
Merged-chr17-8147845-3	chr17	8147322	8148322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083938)	promoter-TSS (NM_001083938)	10.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	114.98	70.04	50.87	108.63	50.85	32.96	108.79	70.75	30.6
Merged-chr1-189799152-3	chr1	189798648	189799648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	70880.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	20.02	20.27	16.65	19.57	34.06	22.51	43.3	34.05	26.85
Merged-chr15-80711142-3	chr15	80710641	80711641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-172.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	230.54	231.77	149.84	198.37	194.07	162.37	202.79	233.46	94.93
Merged-chr2-60284781-3	chr2	60284272	60285272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-288.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	126.42	173.25	105.44	107.95	94.7	102.08	134.14	134.86	117.41
Merged-chr3-95111101-3	chr3	95110598	95111598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009336)	promoter-TSS (NM_009336)	56.0	NM_009336	21427.0	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	101.83	70.96	110.99	85.69	52.25	82.79	102.45	101.26	68.7
Merged-chr11-83020250-1	chr11	83019750	83020750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181545, intron 1 of 5)	intron (NM_181545, intron 1 of 5)	472.0	NM_001167743	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	130.43	186.62	149.84	106.61	114.29	73.95	132.02	156.53	98.68
Merged-chr1-152540709-3	chr1	152540221	152541221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	84496.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	253.99	207.81	87.87	246.27	181.47	133.43	184.83	224.18	135.52
Merged-chr2-173737501-3	chr2	173737018	173738018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019806)	promoter-TSS (NM_019806)	-53.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	201.36	165.42	202.56	253.02	166.54	117.35	291.51	205.17	111.17
Merged-chr13-30974038-3	chr13	30973521	30974521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025588)	promoter-TSS (NM_025588)	26.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	109.83	134.09	114.69	101.88	153.48	102.08	128.85	120.71	84.94
Merged-chrUn_JH584304-56958-1	chrUn_JH584304	56458	57458	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 3 of 6)	intron (NR_003518, intron 3 of 6)	2731.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	20.07	4.86	0.0
Merged-chr7-100493322-3	chr7	100492808	100493808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011671)	promoter-TSS (NM_011671)	-50.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	231.11	143.76	177.59	242.9	188.0	201.75	218.63	235.23	114.29
Merged-chr4-139490915-3	chr4	139490427	139491427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39621.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	21.74	23.04	35.15	20.92	17.73	37.78	32.74	19.9	24.98
Merged-chr12-112866682-3	chr12	112866171	112867171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5755.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	46.91	30.87	8.32	35.76	8.86	21.7	25.35	20.34	15.61
Merged-chrUn_JH584304-35293-1	chrUn_JH584304	34793	35793	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24396.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	47.53	26.97	0.0
Merged-chr1-156674366-3	chr1	156673882	156674882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023141)	promoter-TSS (NM_023141)	-43.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	350.67	377.84	260.84	369.75	359.21	321.52	305.24	332.51	154.26
Merged-chr4-95215369-3	chr4	95214872	95215872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-163150.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	78.37	53.45	39.77	107.95	100.3	66.71	53.87	41.56	22.48
Merged-chr14-114948532-3	chr14	114948021	114949021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-2573.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	36.61	25.34	22.2	54.65	59.25	37.78	9.51	10.17	5.0
Merged-chr2-12419486-3	chr2	12418988	12419988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149732)	promoter-TSS (NR_149732)	-28.0	NR_149731	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	53.77	49.3	44.4	48.58	42.45	69.93	92.94	61.9	41.84
Merged-chr4-114986728-3	chr4	114986239	114987239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	CpG	489.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	306.05	314.25	262.69	294.85	302.3	306.24	306.29	309.07	176.74
Merged-chr7-35729834-3	chr7	35729333	35730333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	24621.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	28.6	32.72	7.4	18.89	19.59	22.51	4.22	1.77	5.0
Merged-chr15-80133136-3	chr15	80132644	80133644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025609)	promoter-TSS (NM_025609)	-10.0	NM_025609	66513.0	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	89.24	105.52	93.42	108.63	83.51	144.68	127.8	109.66	74.94
Merged-chr12-55361137-3	chr12	55360633	55361633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-23089.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	21.17	11.98	21.27	14.17	13.53	6.43	20.07	7.52	20.61
Merged-chr14-33245084-3	chr14	33244583	33245583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	28260.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	30.89	33.18	22.2	42.51	32.66	36.17	8.45	11.5	6.25
Merged-chr16-90885980-1	chr16	90885480	90886480	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	48869.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	10.87	4.15	1.85	5.4	9.8	10.45	9.51	5.31	9.99
Merged-chr16-30416563-3	chr16	30416071	30417071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28041.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	134.43	122.11	58.27	142.37	113.83	109.32	189.06	196.76	79.94
Merged-chr1-20064443-1	chr1	20063943	20064943	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 66 of 66)	intron (NM_153179, intron 66 of 66)	-292011.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.57	2.76	0.0	0.67	4.2	1.61	0.0	3.54	1.25
Merged-chr15-38653199-3	chr15	38652730	38653730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	32.61	20.74	15.72	29.01	21.46	30.54	25.35	13.71	18.11
Merged-chr4-34614905-3	chr4	34614416	34615416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015824)	promoter-TSS (NM_015824)	26.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	96.11	82.94	74.92	93.79	97.03	113.33	126.74	93.3	60.58
Merged-chr4-149662353-3	chr4	149661856	149662856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 3 of 23)	intron (NM_001029837, intron 3 of 23)	960.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	26.31	23.5	27.75	39.81	23.79	20.09	23.24	21.67	8.12
Merged-chr9-70542726-3	chr9	70542215	70543215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025690)	promoter-TSS (NM_025690)	0.0	NM_001357911	66660.0	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	108.12	83.4	126.72	113.35	88.64	135.84	136.25	106.12	68.07
Merged-chr17-34197671-3	chr17	34197180	34198180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010724)	promoter-TSS (NM_010724)	-515.0	NM_010724	16913.0	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	73.22	59.44	113.77	38.46	38.25	59.48	76.05	92.41	58.71
Merged-chr6-136831886-3	chr6	136831380	136832380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039558, exon 2 of 2)	5' UTR (NM_001039558, exon 2 of 2)	3037.0	NM_178776	320135.0	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	26.89	17.51	11.1	21.59	21.46	43.4	62.31	42.89	26.23
Merged-chr8-70797129-3	chr8	70796635	70797635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106099)	promoter-TSS (NR_106099)	-1000.0	NR_106099	102466823.0		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	28.6	10.6	3.7	11.47	11.2	11.25	16.9	15.48	11.87
Merged-chr7-100863462-3	chr7	100862938	100863938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177073)	promoter-TSS (NM_177073)	-25.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	163.04	110.59	113.77	131.57	110.56	79.58	120.41	112.75	83.69
Merged-chr11-70595820-3	chr11	70595315	70596315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-20079.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	255.14	190.3	106.37	199.04	110.1	122.98	154.2	162.28	128.03
Merged-chr3-15426522-1	chr3	15426022	15427022	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001002898)	promoter-TSS (NM_001002898)	-95.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	30.32	27.19	8.32	22.94	39.65	14.47	42.25	31.39	23.11
Merged-chr3-51341285-3	chr3	51340796	51341796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-652.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	212.23	152.06	169.27	231.43	136.69	163.17	199.62	163.6	124.91
Merged-chr5-34169540-3	chr5	34169043	34170043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289804)	promoter-TSS (NM_001289804)	-17.0	NM_001289803	272158.0	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	110.41	107.36	146.14	92.44	92.37	151.92	184.83	202.07	105.55
Merged-chr16-90727432-3	chr16	90726935	90727935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025642)	promoter-TSS (NM_025642)	-64.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	125.85	109.21	83.25	174.75	149.75	115.75	154.2	183.94	70.57
Merged-chr11-119352276-3	chr11	119351784	119352784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018822, intron 2 of 7)	L1MB2|LINE|L1	3226.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	43.48	34.56	11.1	38.46	23.79	12.86	22.18	26.09	5.62
Merged-chr12-8974031-3	chr12	8973586	8974586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159527)	promoter-TSS (NM_001159527)	85.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	7.44	11.52	3.7	14.84	10.73	22.51	14.79	12.38	8.74
Merged-chr9-94512467-3	chr9	94511976	94512976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25605.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	72.65	60.36	26.82	45.21	40.59	25.72	33.8	31.84	27.48
Merged-chr3-86142720-3	chr3	86142225	86143225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016959)	promoter-TSS (NM_016959)	-57.0	NM_016959	20091.0	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	106.97	76.03	61.05	128.87	79.77	77.16	115.12	85.78	51.21
Merged-chr16-11034572-3	chr16	11034058	11035058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	25660.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	20.02	15.67	7.4	15.52	9.33	4.82	13.73	6.19	5.0
Merged-chr11-82952799-3	chr11	82952298	82953298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183201, intron 1 of 5)	intron (NM_183201, intron 1 of 5)	696.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	276.3	250.67	152.62	278.66	266.84	227.47	305.24	380.71	148.01
Merged-chr6-146120369-3	chr6	146119875	146120875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	186253.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	9.15	16.13	3.7	16.19	14.93	8.04	17.96	21.22	7.49
Merged-chr10-125321660-3	chr10	125321170	125322170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	7293.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	94.96	110.13	95.27	108.63	108.23	91.63	90.83	132.65	68.07
Merged-chr16-32608936-3	chr16	32608446	32609446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011638)	promoter-TSS (NM_011638)	50.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	149.88	146.07	180.37	153.84	118.96	200.14	144.7	145.92	108.67
Merged-chr18-36739992-3	chr18	36739484	36740484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028036, intron 9 of 11)	intron (NM_028036, intron 9 of 11)	4603.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	26.89	22.58	15.72	24.96	27.52	21.7	24.29	24.76	17.49
Merged-chr13-104661347-1	chr13	104660847	104661847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_026072, exon 12 of 14)	exon (NM_026072, exon 12 of 14)	155606.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	5.72	2.76	1.85	2.02	0.47	3.22	3.17	1.33	0.0
Merged-chr9-77709142-3	chr9	77708620	77709620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45415.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	12.59	25.8	19.42	31.04	30.79	22.51	20.07	22.55	8.74
Merged-chr1-16104852-3	chr1	16104367	16105367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	-434.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	113.84	141.0	123.02	99.86	135.75	119.76	136.25	145.03	121.16
Merged-chr10-81359065-3	chr10	81358573	81359573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	1582.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	114.41	72.34	44.4	93.79	69.04	53.05	72.88	102.58	35.6
Merged-chr5-64410892-3	chr5	64410388	64411388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57054.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	49.2	47.46	34.22	66.8	47.58	50.64	46.47	38.03	43.09
Merged-chr9-31931899-3	chr9	31931397	31932397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18612.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	6.29	10.6	16.65	22.94	10.73	11.25	3.17	3.98	6.25
Merged-chr9-40192322-3	chr9	40191833	40192833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030713)	promoter-TSS (NM_030713)	17.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	72.08	58.52	57.35	70.17	61.11	64.3	82.38	67.21	59.95
Merged-chr6-35252616-3	chr6	35252106	35253106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015608)	promoter-TSS (NR_015608)	-93.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	85.24	65.43	39.77	123.47	127.36	53.05	81.33	76.49	39.35
Merged-chr11-19925573-3	chr11	19925075	19926075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	CpG	1133.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	416.46	526.22	322.81	462.86	475.84	323.93	348.54	359.48	178.61
Merged-chr2-167376311-3	chr2	167375818	167376818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27140.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	188.21	129.94	115.62	211.86	166.08	132.63	152.09	215.34	101.8
Merged-chr11-53770378-3	chr11	53769866	53770866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-107.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	226.53	150.22	159.09	235.48	144.62	188.09	197.51	183.06	154.88
Merged-chr2-163054530-3	chr2	163054028	163055028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008652)	promoter-TSS (NM_008652)	-107.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	5.72	5.07	7.4	5.4	5.6	12.86	12.67	5.75	1.25
Merged-chr15-80710724-3	chr15	80710237	80711237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144812)	promoter-TSS (NM_144812)	-576.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	137.86	175.1	103.59	130.22	128.29	129.41	137.3	161.39	81.19
Merged-chr7-4494284-3	chr7	4493793	4494793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	7387.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	66.36	47.46	47.17	43.18	27.52	41.8	41.19	39.8	38.72
Merged-chr6-114921879-3	chr6	114921379	114922379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-58.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	59.49	65.89	55.5	62.07	61.58	70.73	90.83	72.52	61.2
Merged-chr7-25687049-4	chr7	25686601	25687601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011577)	promoter-TSS (NM_011577)	99.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	128.71	101.37	149.84	148.44	90.97	127.8	160.54	127.34	89.31
Merged-chr5-110286327-3	chr5	110285865	110286865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008993)	promoter-TSS (NM_008993)	46.0	NM_011132	18973.0	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	15.45	4.61	27.75	20.92	9.33	16.88	31.69	19.01	7.49
Merged-chr6-113740705-3	chr6	113740215	113741215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024206)	promoter-TSS (NM_024206)	-34.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	191.07	248.82	111.92	224.01	231.39	150.31	173.21	190.57	97.43
Merged-chr17-70832768-3	chr17	70832280	70833280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13997.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	438.19	400.42	235.86	377.84	332.62	266.86	298.9	417.85	181.11
Merged-chr1-144314668-3	chr1	144314155	144315155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-65551.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	93.82	76.95	81.4	81.64	66.24	72.34	100.34	77.38	48.71
Merged-chr11-100547182-3	chr11	100546708	100547708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 1 of 11)	MIR|SINE|MIR	1576.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	100.11	83.86	41.62	99.86	62.51	92.44	133.08	144.59	77.44
Merged-chr19-43753197-6	chr19	43752707	43753707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144874)	promoter-TSS (NM_144874)	184.0	NM_025530	66388.0	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	253.42	236.38	194.24	262.47	219.73	193.71	288.34	264.86	168.0
Merged-chr6-145101100-1	chr6	145100600	145101600	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14536.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	9.15	3.23	9.25	14.17	7.0	14.47	8.45	9.29	6.25
Merged-chr1-191086738-3	chr1	191086238	191087238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11676.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	323.21	270.48	190.54	263.14	182.87	223.45	235.53	256.01	134.27
Merged-chr7-80200185-1	chr7	80199685	80200685	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	1744.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	29.75	20.74	26.82	29.01	18.19	12.86	26.4	19.9	7.49
Merged-chr17-74523546-3	chr17	74523031	74524031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4764.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	57.78	69.12	47.17	66.8	61.58	59.48	54.92	68.98	53.71
Merged-chr3-103791360-3	chr3	103790862	103791862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301306)	promoter-TSS (NM_001301306)	-87.0	NM_010432	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	243.69	226.71	151.69	208.49	157.68	138.25	212.29	152.55	128.03
Merged-chr10-91082874-3	chr10	91082402	91083402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	-137.0	NM_027078	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	159.03	141.46	162.79	145.06	188.0	132.63	148.92	150.34	81.19
Merged-chr15-25550470-2	chr15	25549976	25550976	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72074.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	180.2	196.75	102.67	126.17	81.17	77.97	71.82	73.4	59.33
Merged-chr9-108566946-3	chr9	108566454	108567454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	388.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	309.48	314.72	274.71	219.96	229.99	294.19	215.46	244.96	203.6
Merged-chr1-58742598-3	chr1	58742106	58743106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 7 of 8)	intron (NM_001355056, intron 7 of 8)	12054.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	196.79	197.22	138.74	202.42	185.67	163.97	181.66	226.83	116.16
Merged-chr16-18392546-3	chr16	18392046	18393046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272032)	promoter-TSS (NM_001272032)	-17.0	NM_001272031	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	10.3	7.37	5.55	9.45	7.93	11.25	8.45	5.75	5.62
Merged-chr13-64107806-1	chr13	64107306	64108306	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 7 of 11)	intron (NM_001001321, intron 7 of 11)	-18605.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	1.72	4.15	4.62	4.05	3.27	3.22	39.08	41.56	16.24
Merged-chr17-24737681-3	chr17	24737171	24738171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013759, intron 1 of 4)	intron (NM_013759, intron 1 of 4)	1078.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	149.31	135.47	58.27	118.75	83.51	94.04	147.87	152.11	85.56
Merged-chr4-48196556-3	chr4	48196053	48197053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355184, intron 10 of 10)	intron (NM_001355184, intron 10 of 10)	16662.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	33.18	35.94	26.82	31.71	26.59	36.97	44.36	69.86	24.98
Merged-chr9-108492269-1	chr9	108491769	108492769	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168373, intron 1 of 26)	intron (NM_001168373, intron 1 of 26)	1593.0	NM_001168373	71472.0	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	13.73	10.6	14.8	7.42	7.93	15.27	25.35	24.76	22.48
Merged-chr11-88999428-3	chr11	88998924	88999924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009546)	promoter-TSS (NM_009546)	21.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	263.72	261.26	215.51	294.85	257.05	253.19	329.53	456.32	169.87
Merged-chr4-155993143-3	chr4	155992640	155993640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302469)	promoter-TSS (NM_001302469)	-13.0	NM_001302469	20318.0	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	189.92	186.16	189.62	168.0	155.81	202.55	204.9	216.22	131.15
Merged-chr16-20717723-3	chr16	20717231	20718231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145632)	promoter-TSS (NM_145632)	-95.0	NM_145632	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	49.2	50.23	56.42	92.44	82.57	75.56	82.38	112.75	50.59
Merged-chr9-63738225-3	chr9	63737725	63738725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	19769.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	57.78	51.15	28.67	101.88	44.32	56.27	66.54	43.77	26.85
Merged-chr18-84680701-3	chr18	84680197	84681197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	1362.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	114.98	147.45	117.47	138.32	139.49	124.59	125.69	160.95	100.55
Merged-chr4-16159755-3	chr4	16159257	16160257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3886.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	92.1	97.69	86.95	65.45	65.31	81.18	81.33	90.64	49.34
Merged-chr15-81522244-3	chr15	81521763	81522763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55947.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	147.02	101.37	87.87	183.52	98.9	133.43	229.19	204.28	110.54
Merged-chr11-26604429-3	chr11	26603929	26604929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-10509.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	82.38	65.43	64.75	74.89	58.31	53.85	146.81	131.77	70.57
Merged-chr10-117282294-3	chr10	117281777	117282777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017372)	promoter-TSS (NM_017372)	-5.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	171.04	176.94	134.12	167.33	172.61	121.37	146.81	160.06	90.56
Merged-chr12-18610070-3	chr12	18609571	18610571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	95561.0	NM_001201330	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	12.01	5.07	20.35	16.19	10.73	21.7	22.18	10.61	6.87
Merged-chr16-17646450-3	chr16	17645938	17646938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166164)	promoter-TSS (NM_001166164)	-32.0	NM_001166164	72315.0	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	11.44	4.61	0.0	11.47	5.6	14.47	7.39	4.42	3.75
Merged-chr8-11463903-2	chr8	11463409	11464409	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-14020.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	368.97	344.67	269.16	357.6	366.68	266.05	337.98	466.04	202.35
Merged-chr15-101583394-1	chr15	101582894	101583894	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5178.0	NR_002868	432985.0	Mm.491078	NR_002868		Gm5476	EG432985|Kb17P	type II keratin Kb17P pseudogene	pseudo	3.43	0.92	0.0	8.1	8.4	8.04	5.28	1.33	4.37
Merged-chrX-74243763-3	chrX	74243250	74244250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	intron (NM_001290421, intron 1 of 46)	2784.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	42.9	50.23	32.37	39.81	33.12	24.92	39.08	46.87	45.59
Merged-chr4-144981339-3	chr4	144980826	144981826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	88189.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	28.03	18.89	14.8	29.01	37.79	20.09	22.18	18.13	5.0
Merged-chr5-150665725-3	chr5	150665215	150666215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201369)	promoter-TSS (NM_201369)	-103.0	NM_201369	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	121.85	136.39	83.25	111.33	100.77	81.99	142.59	139.72	92.43
Merged-chr6-42340288-3	chr6	42339761	42340761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-9567.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	46.91	59.44	41.62	69.5	57.38	68.32	55.98	70.3	51.84
Merged-chr9-83441157-3	chr9	83440654	83441654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027448)	promoter-TSS (NM_027448)	-27.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	5.15	5.99	0.0	10.12	3.27	9.65	11.62	2.65	7.49
Merged-chr13-9159477-3	chr13	9158982	9159982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 13 of 17)	intron (NM_172585, intron 13 of 17)	65601.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	27.46	20.27	14.8	26.99	12.6	21.7	27.46	25.2	17.49
Merged-chr14-103059150-3	chr14	103058643	103059643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11073.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	66.93	67.74	59.2	74.22	63.45	120.57	104.56	139.72	68.7
Merged-chr1-64753312-3	chr1	64752816	64753816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15566.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	24.6	15.67	11.1	40.48	59.25	36.17	55.98	72.07	33.72
Merged-chr4-11455363-3	chr4	11454855	11455855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30603.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	48.62	49.3	46.25	40.48	46.18	38.58	76.05	76.49	33.1
Merged-chr15-83510955-3	chr15	83510465	83511465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178869)	promoter-TSS (NM_178869)	-58.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	15.45	8.29	1.85	20.24	11.66	18.49	16.9	16.36	7.49
Merged-chr7-80203177-3	chr7	80202690	80203690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	4749.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	139.01	86.17	92.5	112.68	99.83	72.34	86.61	84.9	23.73
Merged-chr8-20557684-1	chr8	20557184	20558184	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57243.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	1.14	1.38	3.7	1.35	2.8	1.61	11.62	13.71	7.49
Merged-chr11-102425665-5	chr11	102425171	102426171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4651.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	324.35	332.69	193.32	309.7	218.79	188.89	253.48	318.8	134.27
Merged-chr17-81703127-1	chr17	81702627	81703627	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	35260.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	115.55	105.52	92.5	95.81	94.7	124.59	87.66	101.26	82.44
Merged-chr6-57703283-3	chr6	57702794	57703794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	CpG	839.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	82.38	118.42	68.45	136.29	114.29	97.26	111.96	142.38	69.95
Merged-chr8-70609636-3	chr8	70609153	70610153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1339.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	284.88	233.16	214.59	283.38	214.13	176.83	221.8	241.87	101.17
Merged-chr17-45572607-3	chr17	45572140	45573140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008302, intron 1 of 10)	CpG	621.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	264.29	249.75	179.44	249.65	246.32	164.78	160.54	231.7	152.38
Merged-chr4-150914559-3	chr4	150914087	150915087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4666.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	272.3	292.14	237.71	336.01	333.09	290.17	376.0	377.17	179.86
Merged-chr17-27826419-3	chr17	27825930	27826930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5888.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	208.23	170.03	131.34	228.73	167.94	181.66	162.65	201.63	114.29
Merged-chr5-124059836-3	chr5	124059340	124060340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27580.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	78.37	63.59	74.92	72.19	67.18	79.58	111.96	107.0	66.2
Merged-chr2-144204896-3	chr2	144204404	144205404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15614.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	14.87	13.36	0.0	13.49	9.33	10.45	19.01	9.73	5.0
Merged-chr2-51376279-1	chr2	51375779	51376779	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61621.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	11.44	10.14	12.02	37.11	38.72	23.31	13.73	12.82	12.49
Merged-chr3-79178221-3	chr3	79177727	79178727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32352.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	245.41	240.99	127.64	181.5	192.2	200.95	251.37	259.11	165.5
Merged-chr10-10457206-3	chr10	10456704	10457704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	15110.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	131.57	176.94	128.57	130.9	139.02	130.21	164.76	183.94	137.4
Merged-chr4-95193206-3	chr4	95192702	95193702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140980.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	46.91	37.78	39.77	55.33	46.18	43.4	73.93	42.01	28.1
Merged-chr10-60349240-3	chr10	60348773	60349773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	2422.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	90.38	82.48	75.85	138.32	90.5	80.38	124.63	125.58	64.33
Merged-chr4-126259687-3	chr4	126259185	126260185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2720.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	137.86	143.3	135.97	159.23	114.29	160.76	143.64	157.85	101.8
Merged-chr7-42980290-3	chr7	42979764	42980764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-38534.0	NM_001105061	668612.0	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	2.29	10.14	7.4	6.75	6.06	12.86	12.67	8.84	9.99
Merged-chr8-126929690-3	chr8	126929200	126930200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_024214)	TTS (NM_024214)	16221.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	40.62	26.26	26.82	53.98	29.86	34.56	40.14	41.56	26.23
Merged-chr10-78009377-3	chr10	78008885	78009885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358793, intron 1 of 21)	CpG	422.0	NM_008826	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	97.25	109.21	94.35	143.71	135.29	124.59	111.96	145.92	100.55
Merged-chr7-25680260-3	chr7	25679749	25680749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362154)	promoter-TSS (NM_001362154)	-531.0	NM_001362154	232987.0	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	160.75	169.11	97.12	134.27	101.7	154.33	143.64	167.14	114.91
Merged-chr1-172632574-1	chr1	172632074	172633074	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026725, intron 1 of 1)	CpG	400.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	236.83	202.75	160.94	250.32	198.73	184.87	230.25	261.32	143.02
Merged-chr16-93144219-3	chr16	93143706	93144706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208983.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	21.17	13.36	9.25	16.87	16.79	7.23	17.96	14.59	13.12
Merged-chr8-26963534-3	chr8	26963020	26964020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13816.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	102.97	88.01	61.05	122.12	109.63	160.76	95.06	67.21	33.72
Merged-chr10-80323646-3	chr10	80323127	80324127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008793, intron 10 of 14)	CpG-1280	-3079.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	62.35	28.57	33.3	67.47	43.85	50.64	55.98	32.72	14.36
Merged-chr5-34487614-3	chr5	34487105	34488105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26374.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	187.06	143.3	107.29	114.7	83.04	83.59	90.83	95.95	83.06
Merged-chr6-108902356-3	chr6	108901837	108902837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	73696.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	26.31	21.2	22.2	17.54	22.39	30.54	9.51	12.38	7.49
Merged-chr17-47593432-3	chr17	47592944	47593944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007632)	promoter-TSS (NM_007632)	-23.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	42.9	47.46	36.07	49.93	46.18	49.03	47.53	53.06	45.59
Merged-chr4-108082457-3	chr4	108081960	108082960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 10 of 15)	B4|SINE|B4	-4897.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	72.65	69.58	78.62	125.5	56.45	76.36	176.38	142.82	54.33
Merged-chr2-32917730-3	chr2	32917236	32918236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 5 of 13)	intron (NM_146119, intron 5 of 13)	41602.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	17.73	16.59	14.8	55.33	41.99	60.28	10.56	11.05	12.49
Merged-chr5-142909293-3	chr5	142908814	142909814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2560.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	129.86	103.22	161.87	105.26	63.45	115.75	159.48	168.91	119.91
Merged-chr11-77493244-3	chr11	77492740	77493740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004144)	promoter-TSS (NM_001004144)	-172.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	22.31	24.42	34.22	30.36	26.12	25.72	44.36	27.86	24.98
Merged-chr2-155299693-1	chr2	155299193	155300193	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004721, intron 8 of 11)	intron (NM_001004721, intron 8 of 11)	23329.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	10.3	20.27	24.05	52.63	36.39	69.13	11.62	17.69	20.61
Merged-chrX-17608917-3	chrX	17608401	17609401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36576.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	13.73	20.74	11.1	24.96	17.26	19.29	5.28	12.38	8.74
Merged-chr1-4858121-1	chr1	4857621	4858621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	-207.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	148.73	112.43	118.39	105.93	89.57	94.04	108.79	76.94	81.19
Merged-chr1-24005625-3	chr1	24005123	24006123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026503)	promoter-TSS (NM_026503)	17.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	48.62	47.92	62.9	52.63	41.05	46.62	78.16	45.1	43.09
Merged-chr4-109000532-3	chr4	109000031	109001031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347169)	promoter-TSS (NM_001347169)	-124.0	NM_001346554	230598.0	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	253.99	225.32	154.47	248.3	225.79	172.81	227.08	185.71	126.15
Merged-chr6-91683424-3	chr6	91682930	91683930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-637.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	165.32	191.23	193.32	174.75	144.15	162.37	214.41	240.98	143.64
Merged-chr10-60934509-3	chr10	60934019	60935019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	3613.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	14.3	12.44	7.4	51.28	38.25	45.82	67.6	30.51	29.35
Merged-chr19-32389671-3	chr19	32389168	32390168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033198, intron 1 of 1)	CpG-7452	452.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	71.51	46.08	33.3	70.85	46.18	57.07	53.87	38.03	34.97
Merged-chr13-48513470-3	chr13	48512956	48513956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164575)	promoter-TSS (NM_001164575)	-20.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	49.2	78.33	65.67	73.54	76.04	65.11	76.05	93.74	53.08
Merged-chr14-20082855-3	chr14	20082371	20083371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026209, intron 1 of 1)	CpG	301.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	303.76	352.5	197.94	350.85	373.21	300.62	326.36	343.12	205.47
Merged-chr2-80315518-3	chr2	80315024	80316024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	58.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	95.53	99.99	66.6	116.05	92.84	71.54	98.23	77.38	73.07
Merged-chr1-131360946-3	chr1	131360457	131361457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 5 of 22)	intron (NM_001081011, intron 5 of 22)	-81394.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	74.94	40.55	49.02	109.3	43.39	46.62	54.92	41.56	28.73
Merged-chr15-84131645-3	chr15	84131125	84132125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8450.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	14.3	9.68	16.65	15.52	17.26	16.88	9.51	9.29	7.49
Merged-chr12-80644245-3	chr12	80643722	80644722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347409)	promoter-TSS (NM_001347409)	7.0	NM_026244	328133.0	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	150.45	159.89	114.69	139.67	120.83	138.25	152.09	135.75	94.93
Merged-chr7-125621903-1	chr7	125621403	125622403	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	PB1D10|SINE|Alu	18474.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	22.88	15.67	19.42	37.11	31.72	47.42	26.4	13.71	19.98
Merged-chr10-128535990-3	chr10	128535480	128536480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10121.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	67.5	73.73	57.35	85.69	53.65	82.79	78.16	78.71	49.34
Merged-chr1-36961030-3	chr1	36960515	36961515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21488.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	151.02	120.73	86.02	118.75	75.11	66.71	99.28	118.06	49.96
Merged-chr7-24399662-3	chr7	24399184	24400184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028047)	promoter-TSS (NM_028047)	56.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	175.05	166.34	115.62	144.39	154.88	138.25	195.39	154.32	98.05
Merged-chr2-124647887-3	chr2	124647390	124648390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-5691.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	76.66	72.8	61.05	61.4	68.58	71.54	55.98	70.3	53.08
Merged-chr19-29067190-3	chr19	29066690	29067690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045687)	promoter-TSS (NR_045687)	-111.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	23.45	32.72	40.7	20.24	28.46	32.15	26.4	22.99	38.72
Merged-chr11-69098781-3	chr11	69098284	69099284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-165.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	442.77	334.07	181.29	432.49	335.42	300.62	305.24	344.89	186.11
Merged-chr13-37218776-3	chr13	37218277	37219277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	55.49	56.22	44.4	74.89	62.05	69.13	34.85	43.77	41.84
Merged-chr14-10430832-3	chr14	10430328	10431328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	22630.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	50.34	93.08	47.17	97.16	75.11	74.75	74.99	82.24	61.2
Merged-chr2-113442240-1	chr2	113441740	113442740	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	1176.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	61.78	75.11	64.75	68.82	68.58	73.14	47.53	44.22	19.36
Merged-chr2-77280807-3	chr2	77280321	77281321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-229.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	144.73	94.0	74.92	139.67	100.77	95.65	149.98	87.99	63.7
Merged-chr13-42103124-3	chr13	42102610	42103610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51089.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	102.4	90.77	48.1	96.48	77.91	36.97	82.38	102.14	28.73
Merged-chr4-126820110-3	chr4	126819597	126820597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	66327.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	69.79	94.0	51.8	62.07	64.38	71.54	57.03	80.92	59.95
Merged-chr8-3251292-3	chr8	3250808	3251808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330056, intron 2 of 21)	intron (NM_001330056, intron 2 of 21)	28309.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	20.02	28.57	37.92	22.27	18.19	16.88	23.24	13.71	27.48
Merged-chr3-144719255-3	chr3	144718733	144719733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	1102.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	446.77	452.95	288.59	423.05	398.4	276.5	395.01	507.61	279.79
Merged-chr1-91051681-3	chr1	91051194	91052194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1750.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	37.76	37.32	20.35	30.36	19.13	28.94	23.24	15.92	33.1
Merged-chr17-51477526-3	chr17	51477046	51478046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29277.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	28.6	21.2	18.5	41.83	19.59	23.31	45.42	27.86	11.87
Merged-chr5-65335740-3	chr5	65335243	65336243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347358)	promoter-TSS (NM_001347358)	-104.0	NM_001347358	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	59.49	59.44	74.0	59.38	58.78	66.71	57.03	72.96	39.97
Merged-chr13-111686262-3	chr13	111685771	111686771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172593)	promoter-TSS (NM_172593)	93.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	22.88	7.83	23.12	24.96	3.27	8.04	13.73	10.17	12.49
Merged-chr2-75776812-1	chr2	75776312	75777312	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-55365.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	90.38	74.19	57.35	89.74	68.58	62.7	129.91	118.94	98.05
Merged-chr17-24632657-3	chr17	24632172	24633172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286720)	promoter-TSS (NM_001286720)	-10.0	NM_001357615	18207.0	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	29.75	24.88	18.5	34.41	39.65	56.27	35.91	27.86	21.86
Merged-chr6-72512668-3	chr6	72512212	72513212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31679.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	224.82	201.36	114.69	306.32	325.16	217.83	272.5	300.67	109.29
Merged-chr13-23709970-3	chr13	23709458	23710458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010424, intron 1 of 5)	MLTR14|LTR|ERV1	896.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	390.14	385.22	248.81	342.76	294.83	165.58	334.81	515.12	203.6
Merged-chr2-159784874-3	chr2	159784364	159785364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162477.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	40.62	46.08	45.32	43.18	25.19	65.91	41.19	33.16	51.84
Merged-chr18-14682990-4	chr18	14682498	14683498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161369)	promoter-TSS (NM_001161369)	-84.0	NM_001161371	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	184.2	202.75	171.12	203.09	220.19	206.57	223.91	198.53	167.37
Merged-chr4-20033512-3	chr4	20033018	20034018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-8534.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	22.88	22.58	11.1	20.24	19.13	16.08	30.63	19.46	13.12
Merged-chr2-166627709-3	chr2	166627191	166628191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	63169.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	37.76	25.34	33.3	43.86	25.66	35.37	31.69	31.84	31.85
Merged-chr14-75863919-3	chr14	75863418	75864418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15995.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	58.35	47.46	16.65	59.38	56.91	44.21	76.05	76.94	21.23
Merged-chr16-27436764-1	chr16	27436264	27437264	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025615, intron 7 of 9)	intron (NM_001025615, intron 7 of 9)	47808.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	13.73	29.03	17.57	23.62	16.79	16.88	22.18	12.82	11.87
Merged-chr15-38528101-3	chr15	38527585	38528585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-8819.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	13.16	12.44	3.7	10.8	8.86	16.08	10.56	15.92	8.74
Merged-chr11-99043117-3	chr11	99042648	99043648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010517, intron 1 of 3)	intron (NM_010517, intron 1 of 3)	1904.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	36.61	53.91	51.8	39.81	29.39	65.91	23.24	26.09	42.47
Merged-chr3-117319848-3	chr3	117319346	117320346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177664, exon 7 of 7)	3' UTR (NM_177664, exon 7 of 7)	41030.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	16.59	20.27	11.1	15.52	13.06	8.04	11.62	10.61	18.11
Merged-chr11-69420357-3	chr11	69419871	69420871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081330)	TTS (NM_001081330)	-6696.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	203.08	186.62	127.64	201.74	153.01	120.57	126.74	141.49	84.31
Merged-chr13-83601973-2	chr13	83601468	83602468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	28361.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	10.3	13.36	7.4	6.07	8.86	0.8	7.39	6.19	3.75
Merged-chr2-13786160-3	chr2	13785664	13786664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145838, intron 2 of 7)	L1_Mus4|LINE|L1	7356.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	28.03	25.34	7.4	22.94	10.26	6.43	10.56	8.4	10.62
Merged-chr6-42245883-3	chr6	42245387	42246387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029555)	promoter-TSS (NM_029555)	-48.0	NM_029555	76263.0	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	10.3	4.61	3.7	11.47	13.53	4.02	8.45	3.54	2.5
Merged-chr10-85125852-3	chr10	85125332	85126332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028832, intron 2 of 2)	L2|LINE|L2	2195.0	NM_028832	74238.0	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.0	0.92	2.77	6.07	2.8	6.43	2.11	3.1	3.75
Merged-chr4-132515655-3	chr4	132515156	132516156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5200.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	81.8	85.25	61.97	75.57	56.45	68.32	102.45	122.04	54.33
Merged-chr10-24164766-3	chr10	24164306	24165306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	15489.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	234.54	222.56	142.44	209.16	126.42	146.29	193.28	193.67	99.92
Merged-chr18-82914428-5	chr18	82913882	82914882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177464)	promoter-TSS (NM_001177464)	-250.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	278.59	197.22	197.94	308.35	115.69	146.29	250.32	184.38	146.76
Merged-chr15-58134553-1	chr15	58134053	58135053	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027435, intron 1 of 27)	CpG	529.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	270.58	339.14	223.84	290.8	394.67	230.69	243.98	353.73	184.86
Merged-chr11-75510806-3	chr11	75510325	75511325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029938, exon 4 of 8)	exon (NM_001029938, exon 4 of 8)	731.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	56.06	41.01	60.12	44.53	48.52	61.89	45.42	32.72	39.97
Merged-chr6-134673895-3	chr6	134673408	134674408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	MTEa|LTR|ERVL-MaLR	32968.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.29	5.53	1.85	9.45	2.33	3.22	5.28	2.65	0.0
Merged-chr14-67715864-3	chr14	67715342	67716342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110162)	promoter-TSS (NM_001110162)	-1.0	NM_175384	108912.0	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	62.93	64.05	68.45	66.8	48.52	47.42	76.05	72.52	49.34
Merged-chr14-50926738-3	chr14	50926254	50927254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310505)	TTS (NM_001310505)	1805.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	36.04	50.23	41.62	31.04	34.06	61.89	63.37	82.69	33.1
Merged-chr5-122769000-2	chr5	122768497	122769497	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	10413.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	52.06	37.32	22.2	88.39	69.04	39.39	36.97	30.51	41.22
Merged-chr6-86548107-3	chr6	86547597	86548597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	20696.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	79.52	62.67	40.7	33.06	13.06	17.68	65.48	73.4	24.98
Merged-chr18-67289136-3	chr18	67288641	67289641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053261)	promoter-TSS (NM_053261)	-82.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	11.44	11.52	9.25	26.31	8.86	10.45	21.12	14.15	9.37
Merged-chr19-46045172-3	chr19	46044657	46045657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113408, exon 1 of 11)	5' UTR (NM_001113408, exon 1 of 11)	154.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	164.18	129.94	125.79	176.78	141.82	156.74	156.32	141.05	128.65
Merged-chr9-45252651-3	chr9	45252194	45253194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14013.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	188.21	157.13	190.54	177.45	142.75	155.13	194.34	165.81	136.77
Merged-chr11-90638164-3	chr11	90637666	90638666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011505)	promoter-TSS (NM_011505)	-18.0	NM_199008	69802.0	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	52.06	45.62	26.82	59.38	46.18	59.48	69.71	47.31	55.58
Merged-chr2-154791901-3	chr2	154791396	154792396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139513, intron 1 of 8)	CpG	786.0	NM_001139511	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	174.48	122.11	166.49	172.05	182.4	161.56	143.64	114.08	120.53
Merged-chr12-119230790-3	chr12	119230286	119231286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 1 of 13)	intron (NM_177290, intron 1 of 13)	7490.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	9.72	3.69	0.0	4.72	5.13	0.0	3.17	3.1	6.25
Merged-chr12-98265220-3	chr12	98264720	98265720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3415.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	127.0	150.22	99.89	130.9	109.63	136.64	132.02	152.11	90.56
Merged-chr11-101171454-3	chr11	101170914	101171914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-42.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	70.36	64.97	79.55	92.44	81.64	65.91	107.73	101.7	54.33
Merged-chr1-134400023-1	chr1	134399523	134400523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5758.0	NM_028057	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	28.6	29.03	18.5	1.35	0.47	2.41	0.0	0.44	0.62
Merged-chr13-22041005-1	chr13	22040505	22041505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175656)	TTS (NM_175656)	357.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	73.79	90.31	88.8	70.85	65.31	107.71	100.34	121.6	84.94
Merged-chr16-50396372-3	chr16	50395860	50396860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	36029.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	58.92	34.56	22.2	41.16	33.12	29.74	46.47	34.05	23.11
Merged-chr1-165642458-3	chr1	165641963	165642963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7922.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	349.52	344.21	234.01	379.19	314.43	299.81	335.87	392.2	184.86
Merged-chr6-57707936-3	chr6	57707442	57708442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	L1_Mur3|LINE|L1	5487.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	25.17	16.13	12.95	25.64	17.73	28.13	23.24	25.65	28.73
Merged-chr7-30588908-3	chr7	30588404	30589404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	-178.0	NM_029274	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	113.84	89.85	116.54	97.16	83.97	124.59	130.97	62.35	71.82
Merged-chr11-51921568-3	chr11	51921072	51922072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46059.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	289.46	244.22	226.61	359.62	284.57	299.01	274.61	335.16	203.6
Merged-chr19-40513829-3	chr19	40513332	40514332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009166)	promoter-TSS (NM_009166)	-20.0	NM_009166	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	21.74	19.81	9.25	34.41	19.13	24.11	28.52	25.65	9.99
Merged-chr12-35117714-3	chr12	35117200	35118200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 17 of 25)	intron (NM_001014973, intron 17 of 25)	70511.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	29.17	15.21	15.72	22.27	14.93	13.66	8.45	16.36	8.74
Merged-chr9-108691563-3	chr9	108691051	108692051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008924)	promoter-TSS (NM_008924)	-592.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	267.72	330.84	206.26	217.26	248.18	211.4	159.48	290.5	155.51
Merged-chr7-19844744-3	chr7	19844258	19845258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7245.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	75.51	48.38	24.05	87.71	59.71	41.8	66.54	41.12	46.84
Merged-chr15-34238154-3	chr15	34237661	34238661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033521, exon 1 of 7)	5' UTR (NM_033521, exon 1 of 7)	135.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	145.3	135.93	76.77	153.84	142.75	79.58	105.62	91.09	53.71
Merged-chr2-130424815-3	chr2	130424308	130425308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114541)	promoter-TSS (NM_001114541)	-167.0	NM_001114541	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	310.63	299.97	185.92	309.02	294.83	214.61	260.88	253.8	180.49
Merged-chr4-53082093-3	chr4	53081594	53082594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013454, exon 16 of 50)	exon (NM_013454, exon 16 of 50)	70214.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	40.62	40.09	17.57	64.77	34.99	49.03	72.88	85.78	24.98
Merged-chr5-43094582-3	chr5	43094071	43095071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138892.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	20.02	11.52	3.7	21.59	39.65	20.09	8.45	5.31	5.62
Merged-chr12-25092704-6	chr12	25092206	25093206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3386.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	95.53	48.38	39.77	77.59	42.92	32.96	25.35	24.32	19.98
Merged-chr10-28074748-1	chr10	28074248	28075248	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008983)	promoter-TSS (NM_008983)	-72.0	NM_001359355	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	8.01	2.3	3.7	5.4	4.67	1.61	5.28	0.88	3.75
Merged-chr2-75698223-3	chr2	75697721	75698721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	6442.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	38.9	42.85	34.22	55.33	53.18	32.96	45.42	62.79	54.33
Merged-chr3-57735939-3	chr3	57735436	57736436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304456)	promoter-TSS (NM_001304456)	-121.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	339.23	291.22	266.39	354.9	349.88	339.2	348.54	355.06	187.98
Merged-chr11-26601969-3	chr11	26601456	26602456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-8036.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	181.91	156.21	69.37	188.25	128.76	83.59	201.73	182.62	88.68
Merged-chr13-41019957-3	chr13	41019429	41020429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	3679.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	63.5	50.23	53.65	62.75	46.65	61.09	52.81	68.98	57.46
Merged-chr15-103258450-3	chr15	103257961	103258961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302341)	promoter-TSS (NM_001302341)	-58.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	20.02	14.28	9.25	27.66	18.66	11.25	22.18	21.67	11.24
Merged-chr7-6156174-3	chr7	6155679	6156679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013012)	promoter-TSS (NM_001013012)	-208.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	305.48	249.75	265.46	247.62	221.59	237.12	306.29	263.97	146.14
Merged-chr10-51454141-3	chr10	51453643	51454643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26469.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	283.74	313.79	163.72	317.79	206.2	215.42	272.5	389.99	169.25
Merged-chr11-83834439-3	chr11	83833951	83834951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16418.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	65.79	36.4	16.65	63.42	46.65	36.97	52.81	34.93	22.48
Merged-chr8-109863613-3	chr8	109863118	109864118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-4985.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	78.37	109.67	71.22	63.42	69.51	79.58	80.27	94.18	76.19
Merged-chr5-63831247-3	chr5	63830736	63831736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	18741.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	75.51	120.26	70.3	77.59	98.43	100.47	108.79	144.15	86.18
Merged-chr7-90034113-3	chr7	90033595	90034595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	4936.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	248.84	231.77	141.52	291.48	273.37	241.14	241.87	305.98	144.89
Merged-chr8-116946589-3	chr8	116946073	116947073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	3180.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	95.53	104.14	109.14	132.24	90.04	143.07	87.66	107.45	81.19
Merged-chr15-94589882-3	chr15	94589370	94590370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008971)	promoter-TSS (NM_008971)	-46.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	222.53	268.64	279.34	169.35	236.05	240.33	239.75	221.53	228.58
Merged-chr9-21955940-5	chr9	21955398	21956398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025870, exon 1 of 2)	exon (NM_025870, exon 1 of 2)	108.0	NR_132099	100049077.0	Mm.46647	NR_132099		Gm45914	-	predicted gene, 45914	ncRNA	159.6	189.38	165.57	164.63	139.49	178.44	219.69	152.99	114.91
Merged-chr1-74284905-3	chr1	74284390	74285390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190444)	promoter-TSS (NM_001190444)	-144.0	NM_025580	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	134.43	108.75	86.02	103.23	68.58	74.75	102.45	94.18	51.84
Merged-chr10-98612082-3	chr10	98611554	98612554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260187.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	29.17	19.35	20.35	24.96	9.8	12.06	20.07	11.94	10.62
Merged-chr1-175692829-3	chr1	175692319	175693319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-187.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	65.21	32.25	16.65	69.5	52.25	56.27	61.26	39.35	24.98
Merged-chr13-20090587-3	chr13	20090105	20091105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080288)	promoter-TSS (NM_080288)	98.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	294.04	245.6	242.34	247.62	226.72	223.45	212.29	214.01	169.25
Merged-chr2-167058466-3	chr2	167057950	167058950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-4484.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	109.26	124.87	72.15	145.74	112.43	96.45	153.15	216.66	84.31
Merged-chr5-134522070-3	chr5	134521579	134522579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	30355.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	54.92	45.62	37.92	47.23	44.32	60.28	69.71	64.11	39.35
Merged-chr2-116972286-3	chr2	116971788	116972788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72136.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	325.5	294.9	186.84	304.97	229.99	195.32	264.05	309.07	177.37
Merged-chr6-33060336-3	chr6	33059828	33060828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025336)	promoter-TSS (NM_025336)	-68.0	NM_025336	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	50.34	59.9	43.47	62.75	91.44	48.23	55.98	58.81	28.73
Merged-chr10-127290648-3	chr10	127290145	127291145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007837)	promoter-TSS (NM_007837)	-148.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	414.74	325.31	218.29	421.7	346.15	280.52	386.56	429.79	176.12
Merged-chr5-143732473-3	chr5	143731962	143732962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029749)	promoter-TSS (NM_029749)	-182.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	153.31	103.22	120.24	137.64	71.84	127.0	113.01	87.55	71.2
Merged-chr1-40790669-3	chr1	40790181	40791181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172499)	promoter-TSS (NM_172499)	-24.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	17.16	29.95	32.37	60.05	54.58	52.25	53.87	35.82	26.23
Merged-chr7-123369970-3	chr7	123369445	123370445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122643)	promoter-TSS (NM_001122643)	-30.0	NM_001316713	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	283.17	227.63	220.14	358.95	333.55	286.15	291.51	354.18	197.98
Merged-chr6-108661672-3	chr6	108661162	108662162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-728.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	98.97	79.25	69.37	95.14	83.51	77.97	70.76	60.13	24.98
Merged-chr17-35173505-3	chr17	35173004	35174004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019467, intron 1 of 7)	intron (NM_019467, intron 1 of 7)	2548.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	220.24	182.93	164.64	149.11	127.36	159.15	195.39	254.25	136.77
Merged-chr7-101362050-3	chr7	101361583	101362583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	14014.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	655.0	650.63	440.28	637.61	636.78	434.05	573.51	701.28	287.28
Merged-chr1-162740108-3	chr1	162739631	162740631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	CpG	425.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	380.99	501.33	425.48	316.44	445.05	359.29	324.25	412.54	296.03
Merged-chr9-95072807-3	chr9	95072289	95073289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 12 of 15)	intron (NM_177909, intron 12 of 15)	320960.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	20.59	28.11	16.65	22.27	20.53	27.33	14.79	10.61	24.36
Merged-chr10-80249181-3	chr10	80248717	80249717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029272)	promoter-TSS (NM_029272)	-235.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	165.9	153.44	87.87	122.12	111.03	106.9	137.3	160.06	97.43
Merged-chr13-80884808-3	chr13	80884307	80885307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042591, intron 1 of 7)	intron (NM_001042591, intron 1 of 7)	-1288.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	371.26	446.5	158.17	415.63	539.75	163.97	348.54	591.18	189.23
Merged-chr14-31195346-3	chr14	31194836	31195836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	11490.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	52.63	56.22	62.9	59.38	54.58	95.65	59.15	35.82	53.71
Merged-chr15-78597974-3	chr15	78597470	78598470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 1 of 12)	intron (NM_028195, intron 1 of 12)	923.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	75.51	81.56	90.65	79.62	68.58	72.34	126.74	140.17	92.43
Merged-chr7-100428513-3	chr7	100428019	100429019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 20 of 32)	intron (NM_001017985, intron 20 of 32)	-44472.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	62.93	53.91	42.55	85.01	63.45	65.91	53.87	56.6	44.97
Merged-chr19-38819275-3	chr19	38818778	38819778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021315)	promoter-TSS (NM_021315)	-41.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	43.48	35.94	24.05	56.0	47.12	43.4	59.15	41.12	31.23
Merged-chr9-119340004-3	chr9	119339494	119340494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010851)	promoter-TSS (NM_010851)	46.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	155.03	211.96	167.42	127.52	141.35	176.83	178.5	211.36	173.62
Merged-chr13-88459033-3	chr13	88458549	88459549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-362423.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	32.61	41.93	35.15	28.34	23.33	29.74	51.75	69.42	53.71
Merged-chr8-71671740-3	chr8	71671254	71672254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029873)	promoter-TSS (NM_001029873)	3.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	17.16	12.9	7.4	24.96	20.53	34.56	31.69	30.51	13.74
Merged-chr3-145738164-3	chr3	145737674	145738674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20518.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	25.17	15.67	9.25	16.87	21.46	24.92	25.35	28.3	7.49
Merged-chr10-110745405-3	chr10	110744911	110745911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178609)	promoter-TSS (NM_178609)	-28.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	7.44	3.69	7.4	8.1	1.4	3.22	5.28	0.88	7.49
Merged-chr5-29845264-3	chr5	29844767	29845767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109331.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	53.2	36.4	49.95	60.05	27.52	62.7	60.2	60.58	64.33
Merged-chr9-122351712-3	chr9	122351211	122352211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026179)	promoter-TSS (NM_026179)	95.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	193.93	145.61	182.22	228.73	236.05	168.8	217.57	168.02	79.94
Merged-chr6-108659496-3	chr6	108658991	108659991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	CpG	-1138.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	489.11	441.89	287.66	526.95	428.72	272.48	419.31	512.47	205.47
Merged-chr14-61861584-3	chr14	61861099	61862099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179226.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	46.34	46.08	38.85	54.65	42.92	49.03	36.97	26.53	32.48
Merged-chr14-20393646-3	chr14	20393153	20394153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155747)	promoter-TSS (NR_155747)	-19.0	NM_025440	66242.0	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16|S16mt	mitochondrial ribosomal protein S16	protein-coding	66.36	49.76	68.45	61.4	44.32	88.42	67.6	67.65	49.34
Merged-chr17-17827032-3	chr17	17826607	17827607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3081.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	32.61	41.93	28.67	63.42	48.52	61.09	19.01	9.73	22.48
Merged-chr9-3029453-1	chr9	3028953	3029953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	9290.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	17.16	66.81	7.4	17.54	71.84	8.04	30.63	17.69	2.5
Merged-chr13-115150075-2	chr13	115149587	115150587	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48123.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	6.29	5.07	10.17	22.94	33.12	27.33	21.12	14.59	19.36
Merged-chr4-112256184-1	chr4	112255684	112256684	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177578, intron 4 of 7)	MTD|LTR|ERVL-MaLR	23939.0	NM_001102474	195564.0	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	22.18	13.71	18.11
Merged-chr4-41755528-3	chr4	41755037	41756037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302511)	promoter-TSS (NM_001302511)	235.0	NR_155499	105247116.0	Mm.488220	NR_155499		Gm42274	-	predicted gene, 42274	ncRNA	73.22	82.48	96.2	89.06	82.57	98.06	124.63	109.66	79.32
Merged-chr6-127447840-3	chr6	127447326	127448326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346513, intron 1 of 5)	intron (NM_001346513, intron 1 of 5)	986.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	58.92	68.2	37.0	26.31	18.66	24.92	38.02	40.24	13.74
Merged-chr10-95684903-3	chr10	95684394	95685394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-120748.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	85.81	77.87	49.95	94.46	52.25	49.03	61.26	79.59	23.73
Merged-chr2-70939291-1	chr2	70938791	70939791	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	79083.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	1.14	2.76	1.85	17.54	5.13	4.82	27.46	38.03	13.74
Merged-chr5-100846388-3	chr5	100845880	100846880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 1 of 12)	CpG	151.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	26.89	29.03	21.27	27.66	19.13	28.13	36.97	15.48	9.99
Merged-chr11-90241185-3	chr11	90240675	90241675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67B|LTR|ERV1	-8301.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	104.11	124.87	92.5	119.43	102.17	119.76	78.16	75.61	89.31
Merged-chr9-101251740-3	chr9	101251221	101252221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	111.0	NM_001161362	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	73.22	41.93	45.32	95.14	71.38	102.88	90.83	50.85	53.08
Merged-chr9-71896584-3	chr9	71896078	71897078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-482.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	120.13	120.26	32.37	105.26	128.76	60.28	142.59	168.02	57.46
Merged-chr6-89449003-3	chr6	89448502	89449502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-86389.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	30.32	16.59	24.97	18.22	11.66	5.63	14.79	8.4	16.86
Merged-chr1-156036496-3	chr1	156035999	156036999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-19.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	445.63	412.4	258.99	443.29	381.14	265.25	325.31	412.54	229.83
Merged-chr9-78481821-3	chr9	78481315	78482315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-91.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	318.06	329.0	246.96	288.78	350.81	266.05	290.45	299.35	189.23
Merged-chr15-58019755-3	chr15	58019228	58020228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14566.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	119.56	118.88	105.44	137.64	97.03	108.51	139.42	166.7	88.68
Merged-chr7-100855992-3	chr7	100855498	100856498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	7415.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	156.17	121.19	108.22	126.85	73.24	103.69	94.0	108.77	89.93
Merged-chr17-45557605-3	chr17	45557135	45558135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	1935.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	245.98	133.17	94.35	201.07	59.71	90.02	141.53	110.54	88.68
Merged-chr11-98708728-3	chr11	98708215	98709215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 19 of 25)	L1MB2|LINE|L1	7402.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	195.64	160.81	98.05	216.58	128.29	131.82	151.03	156.09	77.44
Merged-chr17-33759930-3	chr17	33759428	33760428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008997, intron 1 of 4)	CpG	558.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	375.84	381.07	314.48	336.01	310.69	214.61	297.84	373.63	174.87
Merged-chr5-139405228-3	chr5	139404744	139405744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1143.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	414.74	276.01	243.26	418.32	313.96	251.59	355.93	423.6	171.75
Merged-chr15-58076302-1	chr15	58075802	58076802	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001042438, exon 1 of 5)	5' UTR (NM_001042438, exon 1 of 5)	206.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	92.67	83.4	98.05	82.99	87.24	83.59	94.0	102.58	56.21
Merged-chr18-65695570-3	chr18	65695068	65696068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2700.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	162.46	154.82	122.09	211.19	187.54	127.8	154.2	160.95	75.57
Merged-chr2-157500581-3	chr2	157500076	157501076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59502.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	109.26	71.42	37.0	97.16	76.97	71.54	123.57	95.07	26.85
Merged-chrX-99470736-3	chrX	99470245	99471245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290555)	promoter-TSS (NM_001290555)	-10.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	33.75	33.18	49.02	37.11	43.39	40.19	40.14	46.87	41.22
Merged-chr8-34846204-3	chr8	34845729	34846729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 20 of 26)	intron (NM_175091, intron 20 of 26)	38619.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	31.46	38.25	11.1	39.13	32.19	45.01	45.42	50.41	34.97
Merged-chr3-65392659-3	chr3	65392151	65393151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026155)	promoter-TSS (NM_026155)	-98.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	176.76	164.96	127.64	209.84	179.14	159.95	172.16	148.13	83.06
Merged-chr1-172206738-3	chr1	172206213	172207213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	91.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	350.1	323.01	236.79	310.37	260.78	229.88	272.5	291.39	129.28
Merged-chr10-117397329-3	chr10	117396820	117397820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-20347.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	22.88	23.5	8.32	43.86	27.06	26.53	32.74	20.78	17.49
Merged-chr16-32247140-3	chr16	32246632	32247632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173439)	promoter-TSS (NM_173439)	-95.0	NM_001185162	68980.0	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	145.87	141.92	125.79	128.2	77.44	95.65	147.87	114.08	82.44
Merged-chr7-24972153-3	chr7	24971676	24972676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010261, exon 2 of 5)	exon (NM_010261, exon 2 of 5)	552.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	215.09	264.03	210.89	171.38	209.0	204.97	179.55	193.23	174.87
Merged-chr14-121878471-3	chr14	121877981	121878981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131000)	promoter-TSS (NR_131000)	23.0	NR_131000	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	306.62	227.17	160.94	244.92	240.72	187.28	255.6	213.57	136.15
Merged-chr12-3960032-3	chr12	3959550	3960550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008895, exon 3 of 3)	exon (NM_008895, exon 3 of 3)	5105.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	26.89	24.88	46.25	47.9	25.66	26.53	43.3	37.58	17.49
Merged-chr12-40522657-3	chr12	40522170	40523170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	76617.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	59.49	77.41	49.95	58.7	47.58	38.58	66.54	80.92	48.71
Merged-chr2-29055248-3	chr2	29054726	29055726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166705)	promoter-TSS (NM_001166705)	-160.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	14.87	15.67	9.25	16.19	7.46	23.31	15.84	10.61	16.24
Merged-chr6-120155055-3	chr6	120154546	120155546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38777.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	145.87	152.98	62.9	189.6	119.43	150.31	137.3	160.06	99.3
Merged-chr7-67953224-3	chr7	67952710	67953710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	CpG-13221	953.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	21.74	12.44	1.85	13.49	19.13	3.22	7.39	7.07	7.49
Merged-chr12-84020736-3	chr12	84020227	84021227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11225.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	122.42	83.86	33.3	143.04	97.97	68.32	91.89	99.49	43.09
Merged-chr17-33817721-3	chr17	33817225	33818225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6837.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	241.98	184.31	151.69	280.68	207.6	253.19	199.62	196.76	94.3
Merged-chr15-98093400-3	chr15	98092892	98093892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144851, exon 1 of 18)	5' UTR (NM_144851, exon 1 of 18)	177.0	NM_144851	223870.0	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	166.47	167.26	141.52	126.17	137.15	118.16	208.07	129.11	114.91
Merged-chr4-8837672-3	chr4	8837171	8838171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 14 of 36)	intron (NM_001355382, intron 14 of 36)	86347.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	125.28	141.92	105.44	100.53	83.04	110.92	156.32	204.72	111.17
Merged-chr2-129490068-3	chr2	129489562	129490562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	46540.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	262.0	311.49	163.72	262.47	225.79	230.69	276.72	314.82	144.89
Merged-chr9-62894684-3	chr9	62894188	62895188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32664.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	20.59	32.25	34.22	28.34	21.46	35.37	27.46	26.09	23.73
Merged-chr4-33285610-3	chr4	33285123	33286123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24688.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	80.66	64.51	49.02	34.41	28.92	25.72	31.69	29.18	13.74
Merged-chr16-18876595-3	chr16	18876095	18877095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	42.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	44.05	42.85	36.07	45.21	41.52	75.56	70.76	63.67	32.48
Merged-chr5-105567102-3	chr5	105566595	105567595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	47624.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	109.26	128.56	83.25	126.17	86.3	78.77	122.52	102.14	47.46
Merged-chr1-58973506-3	chr1	58973013	58974013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172406)	promoter-TSS (NM_172406)	-9.0	NM_172656	227154.0	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	83.52	90.77	81.4	76.24	88.64	84.4	97.17	65.0	64.95
Merged-chr14-100934764-3	chr14	100934255	100935255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265314.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	8.58	10.14	5.55	17.54	17.26	4.82	21.12	12.38	8.12
Merged-chr2-167503485-3	chr2	167503018	167504018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360930)	promoter-TSS (NM_001360930)	75.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	250.56	213.8	200.71	240.87	189.87	214.61	238.7	190.13	146.76
Merged-chr12-4907531-5	chr12	4906987	4907987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145441)	promoter-TSS (NM_145441)	33.0	NM_145441	217379.0	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	272.87	256.2	232.16	199.04	193.6	155.13	249.26	187.04	146.76
Merged-chr17-88064713-3	chr17	88064218	88065218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001348248, exon 1 of 23)	5' UTR (NM_001348248, exon 1 of 23)	214.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	201.36	259.42	280.26	238.85	244.45	238.73	272.5	257.34	189.23
Merged-chr19-21175803-3	chr19	21175313	21176313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71103.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	26.89	13.82	23.12	16.19	12.6	24.11	20.07	16.8	21.86
Merged-chr13-23716445-3	chr13	23715923	23716923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5569.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	112.12	119.34	72.15	114.03	78.37	81.18	88.72	125.13	71.2
Merged-chr8-25602127-3	chr8	25601632	25602632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-152.0	NM_001001735	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	642.99	598.56	425.48	557.32	606.93	436.46	473.17	548.73	256.06
Merged-chr5-108065611-3	chr5	108065053	108066053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253877)	promoter-TSS (NM_001253877)	-121.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	83.52	83.86	58.27	68.15	74.64	71.54	81.33	54.83	58.08
Merged-chr10-89741225-3	chr10	89740716	89741716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3775.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	5.15	6.45	1.85	13.49	10.73	3.22	6.34	12.38	6.25
Merged-chr2-120137589-3	chr2	120137073	120138073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	17002.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	181.34	209.2	118.39	154.51	140.89	131.02	151.03	175.98	80.56
Merged-chr16-50691005-3	chr16	50690506	50691506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-36126.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	19.45	5.07	1.85	6.75	12.13	12.86	9.51	7.96	5.0
Merged-chr1-131691620-3	chr1	131691136	131692136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	2941.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	164.75	131.78	65.67	147.09	103.1	112.53	129.91	152.11	83.06
Merged-chr9-111058082-3	chr9	111057575	111058575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	-557.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	530.87	418.39	238.64	485.8	329.82	263.64	312.63	357.27	144.89
Merged-chr13-47043378-3	chr13	47042862	47043862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172262)	promoter-TSS (NM_172262)	-137.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	32.04	40.09	28.67	33.74	19.59	63.5	66.54	52.62	29.98
Merged-chr19-5571990-3	chr19	5571460	5572460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033448)	TTS (NM_001033448)	3936.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	138.44	110.13	115.62	156.53	107.76	155.13	182.72	193.23	106.17
Merged-chr1-24550685-1	chr1	24550185	24551185	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	36752.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	4.58	5.53	7.4	9.45	13.53	4.02	5.28	7.52	6.87
Merged-chr2-156190546-3	chr2	156189993	156190993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6154.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	223.67	227.63	192.39	116.05	115.69	104.49	237.64	224.18	133.65
Merged-chr3-54601294-2	chr3	54600784	54601784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91531.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	49.2	33.64	25.9	1.35	2.33	1.61	26.4	13.27	15.61
Merged-chr13-37793094-2	chr13	37792595	37793595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32943.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	84.66	74.65	53.65	44.53	40.12	42.6	15.84	7.52	8.74
Merged-chr2-91947927-3	chr2	91947409	91948409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166597, intron 1 of 31)	intron (NM_001166597, intron 1 of 31)	2439.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	255.14	147.45	107.29	176.78	125.96	110.12	101.39	81.8	47.46
Merged-chr3-89164795-3	chr3	89164296	89165296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007712)	promoter-TSS (NM_007712)	1.0	NM_001163432	12748.0	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	232.83	182.47	120.24	215.91	213.66	159.95	217.57	177.75	121.78
Merged-chr10-56793237-3	chr10	56792740	56793740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	361259.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	145.3	135.93	69.37	154.51	108.7	120.57	133.08	116.29	91.18
Merged-chr9-99165027-3	chr9	99164544	99165544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24833.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	26.89	23.04	24.05	11.47	20.53	25.72	30.63	19.01	24.36
Merged-chr5-31512681-3	chr5	31512189	31513189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133756, exon 14 of 14)	3' UTR (NM_133756, exon 14 of 14)	14073.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	29.75	29.49	19.42	25.64	14.46	29.74	17.96	19.46	20.61
Merged-chr4-108071477-3	chr4	108070981	108071981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 11 of 15)	intron (NM_011327, intron 11 of 15)	-15876.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	134.43	96.3	63.82	113.35	91.44	87.61	132.02	164.49	73.07
Merged-chr2-37970175-3	chr2	37969708	37970708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 11 of 21)	intron (NM_146122, intron 11 of 21)	193959.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	18.31	17.97	27.75	5.4	12.6	24.11	10.56	5.75	29.98
Merged-chr15-73732677-3	chr15	73732224	73733224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7794.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	159.03	217.49	166.49	177.45	172.14	224.26	259.82	233.02	151.76
Merged-chr11-116005183-3	chr11	116004789	116005789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005608, intron 32 of 39)	intron (NM_001005608, intron 32 of 39)	7430.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	77.23	53.91	77.7	63.42	53.18	53.85	71.82	46.87	26.85
Merged-chr2-144369098-5	chr2	144368637	144369637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164813, exon 1 of 2)	exon (NM_001164813, exon 1 of 2)	102.0	NM_181417	228714.0	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	147.02	120.73	135.04	192.97	141.82	196.12	195.39	149.89	111.79
Merged-chr8-83141520-3	chr8	83141036	83142036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23816.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	168.18	210.58	132.27	228.05	202.46	144.68	129.91	156.53	76.19
Merged-chr9-105121376-3	chr9	105120882	105121882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10423.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	86.95	86.17	59.2	75.57	74.64	93.24	35.91	23.43	32.48
Merged-chr5-144768330-6	chr5	144767846	144768846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-446.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	130.43	180.17	138.74	148.44	147.88	146.29	163.71	158.74	100.55
Merged-chr1-85750405-1	chr1	85749905	85750905	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1543.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	17.16	13.36	10.17	39.13	23.33	36.97	17.96	15.03	18.74
Merged-chr7-67462099-3	chr7	67461633	67462633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89275.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	139.01	168.65	114.69	146.41	144.15	202.55	161.6	179.52	138.65
Merged-chr4-132794211-3	chr4	132793716	132794716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	2148.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	320.35	297.67	192.39	308.35	270.57	194.52	364.38	470.47	172.37
Merged-chr18-58136310-1	chr18	58135810	58136810	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010181, intron 7 of 64)	intron (NM_010181, intron 7 of 64)	73616.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	10.3	8.29	5.55	14.84	12.13	5.63	15.84	12.38	10.62
Merged-chr5-36465009-3	chr5	36464522	36465522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024478)	promoter-TSS (NM_024478)	-163.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	167.04	203.21	137.82	155.86	178.67	135.04	208.07	249.82	111.17
Merged-chr18-24142082-3	chr18	24141584	24142584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20265.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	25.17	11.06	12.02	12.14	22.86	17.68	10.56	14.15	20.61
Merged-chr16-91839614-3	chr16	91839121	91840121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 18 of 39)	exon (NM_010587, exon 18 of 39)	92009.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	167.04	119.34	137.82	165.31	101.7	143.07	174.27	191.02	79.94
Merged-chr17-32350672-3	chr17	32350156	32351156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017476)	promoter-TSS (NM_017476)	-79.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	101.25	134.09	79.55	107.28	94.7	97.26	125.69	131.77	76.82
Merged-chr13-92354899-6	chr13	92354373	92355373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	90.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	87.52	77.41	84.17	107.95	101.23	87.61	92.94	115.85	63.08
Merged-chr10-118812139-3	chr10	118811662	118812662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56741.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	235.69	218.41	176.67	213.89	154.88	136.64	211.24	272.37	111.17
Merged-chr10-89744993-3	chr10	89744484	89745484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-7.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	168.76	148.83	92.5	144.39	159.08	106.1	176.38	138.84	80.56
Merged-chr16-90830064-3	chr16	90829557	90830557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-802.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	12.59	15.21	7.4	22.94	16.79	8.04	15.84	10.17	14.36
Merged-chr5-90694661-3	chr5	90694164	90695164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54137.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	48.05	41.93	19.42	62.75	48.98	46.62	27.46	11.05	28.1
Merged-chr4-63558683-3	chr4	63558179	63559179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-84.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	335.8	279.24	175.74	370.42	334.02	223.45	398.18	391.76	153.63
Merged-chr7-110166383-3	chr7	110165894	110166894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44335.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	102.97	118.42	68.45	92.44	88.64	37.78	81.33	108.77	42.47
Merged-chr2-160731322-3	chr2	160730909	160731909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021280)	promoter-TSS (NM_021280)	99.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	81.23	39.63	53.65	82.32	41.05	57.07	84.49	36.26	31.23
Merged-chr2-52925296-3	chr2	52924789	52925789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	67421.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	71.51	68.66	29.6	96.48	63.45	62.7	66.54	60.58	19.36
Merged-chr3-89773405-3	chr3	89772911	89773911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	-11.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	498.83	329.92	302.46	454.76	348.95	273.29	403.46	341.8	176.74
Merged-chr14-8132963-3	chr14	8132442	8133442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	34731.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	20.02	31.33	35.15	35.09	18.19	25.72	22.18	21.22	28.73
Merged-chr15-82127830-3	chr15	82127343	82128343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172428)	promoter-TSS (NM_172428)	-79.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	229.39	203.67	121.17	178.8	176.81	135.04	200.68	211.36	133.65
Merged-chr13-51323286-3	chr13	51322781	51323781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-85337.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	37.18	41.93	52.72	35.76	29.86	62.7	45.42	40.24	31.85
Merged-chr6-82764332-3	chr6	82763841	82764841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	10113.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	60.07	71.42	66.6	66.8	60.18	63.5	96.11	90.2	55.58
Merged-chr3-57732053-3	chr3	57731551	57732551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4006.0	NM_011883	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	42.33	34.56	15.72	38.46	26.12	20.9	26.4	27.41	17.49
Merged-chr15-31530557-1	chr15	31530057	31531057	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 1 of 25)	CpG	480.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	288.32	191.23	182.22	240.87	140.89	154.33	247.15	121.6	128.03
Merged-chr8-105289562-3	chr8	105289078	105290078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-50.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	188.21	136.39	118.39	129.55	103.1	94.04	157.37	127.34	71.82
Merged-chr19-5689692-3	chr19	5689216	5690216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144868)	promoter-TSS (NM_144868)	585.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	364.97	334.53	264.54	253.69	226.72	254.0	270.38	388.22	197.98
Merged-chr19-58943534-3	chr19	58943002	58944002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	77.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	10.3	5.07	12.95	68.15	61.58	27.33	45.42	56.6	25.61
Merged-chr17-36135931-3	chr17	36135444	36136444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6519.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	7.44	9.68	12.02	31.71	21.46	26.53	16.9	12.38	7.49
Merged-chr5-146221453-2	chr5	146220963	146221963	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256086)	promoter-TSS (NM_001256086)	-6.0	NM_028774	74132.0	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	154.45	156.21	146.14	112.0	121.76	180.85	196.45	210.03	139.89
Merged-chr4-43000579-3	chr4	43000065	43001065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009503)	promoter-TSS (NM_009503)	-58.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	181.91	160.35	162.79	165.31	165.61	125.39	148.92	156.97	142.39
Merged-chr18-84807808-3	chr18	84807318	84808318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43520.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	33.75	37.78	29.6	37.11	25.19	38.58	31.69	27.86	20.61
Merged-chr4-150138275-3	chr4	150137765	150138765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-10707.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	5.15	4.15	1.85	4.72	5.6	11.25	6.34	6.63	6.25
Merged-chr13-112363346-3	chr13	112362843	112363843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 8 of 11)	intron (NM_001168403, intron 8 of 11)	74825.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	37.76	32.25	17.57	40.48	29.39	27.33	13.73	7.07	8.74
Merged-chr12-108914239-1	chr12	108913739	108914739	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	19967.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	6.29	14.75	12.95	22.27	20.99	20.9	12.67	6.19	17.49
Merged-chr13-9022813-3	chr13	9022300	9023300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26788.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	5.15	2.3	0.0	8.77	4.2	10.45	4.22	3.1	6.25
Merged-chr4-16082394-3	chr4	16081903	16082903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-68515.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	17.73	10.6	17.57	22.27	19.13	28.13	20.07	10.61	9.37
Merged-chr16-91870381-3	chr16	91869882	91870882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110275, exon 29 of 29)	3' UTR (NM_001110275, exon 29 of 29)	61248.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	182.49	130.4	75.85	216.58	136.22	131.02	156.32	145.92	51.21
Merged-chr2-118976510-3	chr2	118976026	118977026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50029.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	12.01	7.83	0.0	24.29	16.79	9.65	5.28	1.77	2.5
Merged-chr7-114292732-3	chr7	114292280	114293280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16664.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	97.82	148.37	114.69	92.44	96.57	104.49	134.14	210.03	121.16
Merged-chr1-189657586-1	chr1	189657086	189658086	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	30500.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	14.3	17.51	10.17	30.36	21.93	12.06	3.17	2.65	10.62
Merged-chr11-77801425-3	chr11	77800935	77801935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	137.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	34.9	40.09	70.3	51.95	51.32	89.22	61.26	69.42	33.1
Merged-chr11-59534905-3	chr11	59534420	59535420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6649.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	34.32	34.56	36.07	30.36	23.33	42.6	25.35	31.39	24.98
Merged-chr11-3146139-1	chr11	3145639	3146639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 15 of 32)	intron (NM_030207, intron 15 of 32)	22118.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	65.21	88.01	96.2	78.94	105.43	144.68	0.0	1.33	161.13
Merged-chr11-119227671-3	chr11	119227167	119228167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175430)	promoter-TSS (NM_175430)	832.0	NM_001347625	207592.0	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	91.53	54.37	29.6	91.09	61.11	49.83	42.25	37.14	26.85
Merged-chr7-30195115-3	chr7	30194620	30195620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009795)	promoter-TSS (NM_009795)	33.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	124.71	159.89	145.22	106.61	139.02	159.15	166.88	171.56	87.43
Merged-chr7-45458288-4	chr7	45457843	45458843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010240, intron 3 of 3)	intron (NM_010240, intron 3 of 3)	1543.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	170.47	162.2	140.59	161.93	119.89	188.89	160.54	180.4	160.5
Merged-chr12-108758084-3	chr12	108757598	108758598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35213.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	39.47	28.57	24.97	34.41	30.32	42.6	35.91	22.11	15.61
Merged-chr17-57104536-1	chr17	57104036	57105036	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	-849.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	4.0	1.84	2.77	3.37	1.4	4.82	14.79	3.54	8.12
Merged-chr11-3158978-2	chr11	3158486	3159486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	B3|SINE|B2	34477.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	62.35	74.19	65.67	91.76	86.77	148.7	9.51	3.54	114.29
Merged-chr10-122986254-3	chr10	122985749	122986749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029527)	promoter-TSS (NR_029527)	-525.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	242.55	146.07	179.44	249.65	141.82	156.74	261.93	149.45	109.29
Merged-chr4-154935190-3	chr4	154934711	154935711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	127.57	114.27	96.2	147.09	101.23	69.13	142.59	118.06	66.82
Merged-chr12-110737900-3	chr12	110737404	110738404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027149)	promoter-TSS (NM_027149)	7.0	NM_027149	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	96.11	76.03	61.05	106.61	100.77	85.2	126.74	103.02	47.46
Merged-chr11-64496250-3	chr11	64495763	64496763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-59589.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	62.35	59.9	41.62	14.84	20.06	32.96	64.43	57.92	21.86
Merged-chr10-62261322-3	chr10	62260811	62261811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009314, exon 3 of 5)	exon (NM_009314, exon 3 of 5)	8873.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	6.29	3.23	1.85	6.07	0.47	0.0	2.11	0.44	2.5
Merged-chr9-13671365-3	chr9	13670857	13671857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	8897.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	16.59	14.75	11.1	18.22	9.8	13.66	16.9	7.96	8.74
Merged-chr6-30391000-3	chr6	30390492	30391492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311086)	promoter-TSS (NM_001311086)	28.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	75.51	75.11	22.2	39.81	67.64	48.23	73.93	87.11	41.84
Merged-chr18-69416292-3	chr18	69415795	69416795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	70135.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	87.52	83.4	39.77	112.0	81.17	95.65	71.82	61.46	53.08
Merged-chr10-34244909-3	chr10	34244409	34245409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37281.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	71.51	76.95	37.92	58.03	48.05	45.82	86.61	80.03	39.97
Merged-chr2-129360311-3	chr2	129359819	129360819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9583.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	70.93	41.93	49.95	90.41	54.11	57.07	54.92	51.29	46.22
Merged-chr4-70412262-3	chr4	70411822	70412822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1887.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	89.81	76.49	33.3	72.19	43.39	49.83	81.33	72.07	41.22
Merged-chr9-119334508-3	chr9	119333997	119334997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5543.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	32.61	29.95	54.57	38.46	32.66	32.15	36.97	56.6	36.85
Merged-chr12-56345879-3	chr12	56345372	56346372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145442)	promoter-TSS (NM_145442)	22.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	121.28	136.39	94.35	108.63	115.69	93.24	125.69	129.11	85.56
Merged-chr1-58724301-3	chr1	58723806	58724806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6246.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	214.52	221.64	126.72	212.54	173.54	147.9	163.71	212.24	108.04
Merged-chr10-96618454-3	chr10	96617967	96618967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007569, exon 2 of 2)	exon (NM_007569, exon 2 of 2)	1466.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	178.48	242.37	171.12	197.02	174.47	139.86	166.88	270.61	140.52
Merged-chr10-108162054-3	chr10	108161566	108162566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027892)	promoter-TSS (NM_027892)	-334.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	294.61	224.86	215.51	271.91	224.86	258.02	238.7	210.91	163.0
Merged-chr6-125331164-3	chr6	125330670	125331670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011324, exon 2 of 12)	exon (NM_011324, exon 2 of 12)	9830.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	76.66	53.91	50.87	43.18	39.65	68.32	67.6	43.33	42.47
Merged-chr11-119300118-3	chr11	119299610	119300610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-67.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	253.99	225.78	149.84	185.55	171.21	151.11	174.27	161.83	107.42
Merged-chr18-61132151-3	chr18	61131636	61132636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037859)	TTS (NM_001037859)	14668.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	57.78	51.61	56.42	39.13	42.92	83.59	53.87	49.52	62.45
Merged-chr12-106031807-3	chr12	106031300	106032300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	21537.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	58.35	112.89	56.42	64.1	64.38	63.5	49.64	62.35	28.73
Merged-chr18-24653831-3	chr18	24653326	24654326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026779, exon 1 of 15)	5' UTR (NM_026779, exon 1 of 15)	135.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	83.52	98.15	72.15	102.56	124.56	109.32	73.93	84.9	49.96
Merged-chr4-46304944-3	chr4	46304436	46305436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-39258.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	29.17	32.72	18.5	50.6	34.06	50.64	25.35	12.38	14.99
Merged-chr6-50385686-3	chr6	50385182	50386182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	-2845.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	13.73	23.04	16.65	9.45	13.06	14.47	22.18	19.9	19.98
Merged-chr1-82283285-3	chr1	82282809	82283809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010570, intron 1 of 1)	CpG	8130.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	46.34	64.97	61.97	35.09	45.25	43.4	71.82	50.41	43.09
Merged-chr17-43573860-3	chr17	43573374	43574374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	5423.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	90.38	80.18	55.5	103.23	87.7	102.08	77.1	78.26	54.33
Merged-chr9-90060100-3	chr9	90059617	90060617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	5850.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	215.66	206.89	103.59	201.07	159.55	115.75	201.73	193.23	126.78
Merged-chr10-66954317-3	chr10	66953767	66954767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33883.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	117.27	70.04	70.3	130.22	76.51	49.83	151.03	141.94	48.71
Merged-chr3-32397667-3	chr3	32397215	32398215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-32050.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	244.27	264.49	202.56	209.84	183.34	162.37	251.37	172.89	155.51
Merged-chr5-104508437-3	chr5	104507957	104508957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166581, exon 1 of 2)	5' UTR (NM_001166581, exon 1 of 2)	105.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	111.55	86.63	61.05	93.79	79.77	66.71	100.34	53.5	49.96
Merged-chrY-1286586-3	chrY	1286090	1287090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012008)	promoter-TSS (NM_012008)	23.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	170.47	246.52	76.77	162.61	183.8	94.85	153.15	214.45	65.58
Merged-chr14-66872766-3	chr14	66872273	66873273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3923.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	77.23	79.25	78.62	68.82	46.18	100.47	65.48	77.38	71.2
Merged-chr17-24850383-3	chr17	24849874	24850874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024284)	promoter-TSS (NM_024284)	-72.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	227.11	186.62	212.74	235.48	222.06	194.52	200.68	188.36	130.53
Merged-chr6-54992975-3	chr6	54992479	54993479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026637)	promoter-TSS (NM_026637)	-112.0	NM_026637	110175.0	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	43.48	50.69	36.07	45.21	53.65	42.6	60.2	50.41	18.74
Merged-chr14-70074935-3	chr14	70074436	70075436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2509.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	186.49	111.97	113.77	145.74	63.45	78.77	171.1	137.07	111.79
Merged-chr6-124809629-3	chr6	124809115	124810115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009415)	TTS (NM_009415)	697.0	NM_001306053	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	84.66	91.7	107.29	92.44	87.7	113.33	121.46	121.6	78.07
Merged-chr2-27426725-1	chr2	27426225	27427225	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_133905, exon 1 of 30)	non-coding (NR_133905, exon 1 of 30)	883.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	72.65	49.76	76.77	91.09	66.24	73.14	69.71	58.37	43.09
Merged-chr4-19895342-3	chr4	19894838	19895838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27228.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	255.14	316.1	176.67	334.66	335.42	235.51	316.86	385.57	156.76
Merged-chr4-33310276-3	chr4	33309834	33310834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011884)	promoter-TSS (NM_011884)	23.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	95.53	108.75	67.52	95.14	98.43	53.05	116.18	97.28	49.96
Merged-chr4-128655119-1	chr4	128654619	128655619	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	CpG	417.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	147.02	147.45	99.89	172.73	150.68	151.92	165.82	139.28	74.32
Merged-chr8-66444383-3	chr8	66443898	66444898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	42132.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	44.05	48.38	19.42	38.46	29.86	20.09	40.14	26.97	20.61
Merged-chr3-103378272-3	chr3	103377774	103378774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	98981.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	13.73	9.68	7.4	6.07	3.27	2.41	17.96	10.17	12.49
Merged-chr8-123477948-3	chr8	123477455	123478455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	93.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	347.24	328.54	270.09	326.56	309.3	245.16	376.0	334.72	141.77
Merged-chr4-135942385-3	chr4	135941906	135942906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4042.0	NM_008254	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	147.02	111.97	50.87	207.81	130.16	94.04	156.32	159.62	63.08
Merged-chr10-34307271-3	chr10	34306775	34307775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 11 of 11)	intron (NM_176968, intron 11 of 11)	9854.0	NM_030203	72480.0	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	21.17	26.73	24.97	25.64	30.32	17.68	44.36	32.28	15.61
Merged-chr1-171503529-3	chr1	171503034	171504034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	56.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	324.93	365.4	258.06	273.94	295.3	208.18	306.29	351.52	207.97
Merged-chr16-4420516-3	chr16	4420021	4421021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291910)	promoter-TSS (NM_001291910)	-23.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	47.48	38.25	72.15	80.29	55.51	65.91	63.37	48.2	18.74
Merged-chr13-23621203-3	chr13	23620694	23621694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178194)	promoter-TSS (NM_178194)	-70.0	NM_178194	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	252.85	400.42	265.46	250.32	309.76	225.86	268.27	425.36	215.46
Merged-chr10-30803156-3	chr10	30802606	30803606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358841, exon 1 of 16)	5' UTR (NM_001358841, exon 1 of 16)	220.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	235.69	217.03	212.74	330.61	252.38	269.27	202.79	196.32	143.64
Merged-chr18-82825707-3	chr18	82825210	82826210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30187.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	57.78	52.07	31.45	95.14	87.24	66.71	55.98	46.43	23.73
Merged-chr4-45342062-3	chr4	45341506	45342506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153167)	promoter-TSS (NM_153167)	-95.0	NM_153167	242418.0	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	163.61	154.36	146.14	141.69	126.42	104.49	164.76	98.6	113.04
Merged-chr4-128661335-3	chr4	128660848	128661848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6646.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	58.92	73.73	63.82	46.56	69.04	60.28	35.91	49.08	48.09
Merged-chr6-125009706-3	chr6	125009229	125010229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347452)	promoter-TSS (NM_001347452)	60.0	NM_175557	269800.0	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	403.87	219.33	302.46	374.47	134.35	220.24	329.53	199.42	196.73
Merged-chr6-39007380-3	chr6	39006883	39007883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	L2c|LINE|L2	60203.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	99.54	87.55	61.97	101.88	62.51	81.18	68.65	73.4	50.59
Merged-chr11-34771389-3	chr11	34770885	34771885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12520.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	118.42	138.24	93.42	109.98	85.37	100.47	103.51	104.79	70.57
Merged-chr2-103008358-3	chr2	103007862	103008862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65151.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	86.38	79.72	43.47	113.35	109.63	90.02	81.33	81.8	71.2
Merged-chr2-122581902-3	chr2	122581424	122582424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	29353.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	49.77	47.92	35.15	70.85	50.38	66.71	28.52	36.26	13.12
Merged-chr12-35047117-3	chr12	35046617	35047617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-72.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	528.01	516.54	394.03	499.29	395.13	355.27	441.49	396.18	279.16
Merged-chr6-85587522-3	chr6	85586973	85587973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145223)	promoter-TSS (NM_145223)	-58.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	31.46	21.66	35.15	31.04	34.06	50.64	63.37	38.47	33.72
Merged-chr11-46062039-3	chr11	46061545	46062545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 2 of 22)	intron (NM_001291890, intron 2 of 22)	6061.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	18.31	17.97	3.7	23.62	8.4	11.25	21.12	17.69	18.74
Merged-chr9-90208871-3	chr9	90208376	90209376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 11 of 12)	L1ME4b|LINE|L1	45898.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	14.87	9.22	7.4	12.14	10.73	24.92	15.84	15.48	12.49
Merged-chr7-29768472-3	chr7	29767967	29768967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023750)	promoter-TSS (NM_023750)	-85.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	106.4	203.21	95.27	91.09	133.42	160.76	124.63	145.03	115.54
Merged-chr19-47068495-3	chr19	47067971	47068971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177342, intron 1 of 10)	CpG	723.0	NM_177342	226182.0	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	117.84	95.38	92.5	87.04	109.16	118.96	122.52	114.52	69.95
Merged-chr10-10449263-3	chr10	10448787	10449787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 2 of 36)	intron (NM_001127353, intron 2 of 36)	23027.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	53.2	70.5	39.77	53.3	47.12	28.94	71.82	94.18	54.33
Merged-chr1-131911065-3	chr1	131910568	131911568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	CpG	610.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	438.19	355.26	356.11	450.71	328.89	293.38	402.41	349.75	266.05
Merged-chr8-22807997-3	chr8	22807499	22808499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2345.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	137.86	159.89	91.57	125.5	97.03	75.56	140.47	172.89	76.19
Merged-chr19-32757517-3	chr19	32757022	32758022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008960)	promoter-TSS (NM_008960)	-55.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	226.53	175.1	168.34	201.07	138.55	140.66	213.35	158.3	100.55
Merged-chr10-43479974-3	chr10	43479473	43480473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199028, intron 1 of 3)	CpG	833.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	147.59	107.82	119.32	159.23	153.48	134.23	175.33	129.55	69.95
Merged-chr10-128821775-3	chr10	128821285	128822285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153109)	promoter-TSS (NR_153109)	21.0	NR_153109	66118.0	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	132.14	121.65	74.92	112.0	132.95	107.71	129.91	114.96	81.81
Merged-chr12-112867500-3	chr12	112867000	112868000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6584.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	26.89	16.13	16.65	31.04	20.06	16.88	17.96	21.22	15.61
Merged-chr5-139024653-3	chr5	139024158	139025158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29705.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	151.59	123.95	117.47	137.64	93.77	117.35	133.08	128.23	74.32
Merged-chr19-5408690-4	chr19	5408112	5409112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	L2|LINE|L2	1797.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	359.82	233.62	159.09	371.77	171.68	194.52	331.64	385.57	107.42
Merged-chr16-50432379-3	chr16	50431889	50432889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	0.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	137.29	138.24	135.97	161.26	111.5	125.39	153.15	106.12	65.58
Merged-chr16-21695413-3	chr16	21694907	21695907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-742.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	100.11	66.35	69.37	161.93	99.83	139.06	110.9	86.22	54.96
Merged-chr5-64092969-3	chr5	64092459	64093459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356964)	promoter-TSS (NM_001356964)	20.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	50.34	33.18	46.25	54.65	45.72	41.8	55.98	42.01	55.58
Merged-chr10-13967487-3	chr10	13966958	13967958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	1079.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	290.6	160.81	152.62	292.83	180.07	184.07	276.72	172.0	131.78
Merged-chr11-70015376-3	chr11	70014866	70015866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017366)	promoter-TSS (NM_017366)	62.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	72.08	38.25	49.02	70.17	68.58	46.62	49.64	52.18	19.98
Merged-chr3-103967991-3	chr3	103967513	103968513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163467)	promoter-TSS (NM_001163467)	-97.0	NM_001163467	18685.0	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	145.87	177.4	150.77	133.59	144.62	158.35	157.37	164.04	116.16
Merged-chrX-164076380-3	chrX	164075924	164076924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308385)	promoter-TSS (NM_001308385)	69.0	NM_001308385	20438.0	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	siah E3 ubiquitin protein ligase 1B	protein-coding	139.58	122.11	69.37	116.73	109.16	73.95	113.01	132.65	53.08
Merged-chr13-74808726-3	chr13	74808227	74809227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	33.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	40.04	50.23	25.9	70.17	62.05	57.87	80.27	61.9	42.47
Merged-chr8-123065451-3	chr8	123064960	123065960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-48.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	251.7	197.22	186.84	231.43	179.14	229.88	231.3	155.2	134.9
Merged-chr2-48689281-3	chr2	48688772	48689772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124837.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	15.45	10.6	9.25	8.77	6.06	16.08	2.11	7.96	8.74
Merged-chr16-94570805-3	chr16	94570309	94571309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113389)	promoter-TSS (NM_001113389)	-98.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	394.72	391.21	416.23	378.52	417.06	268.47	386.56	290.5	237.32
Merged-chr6-31125732-3	chr6	31125181	31126181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-62588.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	429.61	436.82	280.26	453.41	349.41	268.47	373.89	499.65	191.11
Merged-chr18-34989486-3	chr18	34988974	34989974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35123.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	8.01	6.45	0.0	10.8	4.67	4.82	8.45	4.42	10.62
Merged-chr2-59960319-3	chr2	59959819	59960819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 9 of 35)	intron (NM_001001182, intron 9 of 35)	-77713.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	37.76	28.57	29.6	46.56	29.39	14.47	28.52	30.95	18.74
Merged-chr5-23844152-3	chr5	23843672	23844672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-27.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	118.99	116.12	52.72	76.24	69.51	77.97	98.23	94.18	91.18
Merged-chr11-97435253-3	chr11	97434742	97435742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14918.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	708.2	666.29	302.46	632.89	587.33	319.1	491.13	546.08	217.34
Merged-chr7-43670292-3	chr7	43669779	43670779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	249.42	234.08	207.19	243.57	161.88	196.93	341.15	347.54	159.88
Merged-chr15-53409404-3	chr15	53408911	53409911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63228.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	41.76	56.68	20.35	32.39	40.12	20.09	20.07	23.88	20.61
Merged-chr6-29271179-3	chr6	29270676	29271676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1312.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	249.99	214.26	120.24	214.56	224.86	208.98	156.32	103.02	123.03
Merged-chr14-21032315-3	chr14	21031804	21032804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009502, exon 21 of 21)	3' UTR (NM_009502, exon 21 of 21)	20138.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	69.79	55.29	33.3	43.18	27.52	28.13	29.57	25.65	24.36
Merged-chr9-77924005-3	chr9	77923503	77924503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	6638.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	37.76	17.05	12.95	27.66	14.93	20.9	20.07	15.03	11.24
Merged-chr19-12859342-1	chr19	12858842	12859842	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	9.15	5.07	5.55	4.72	6.53	4.82	3.17	3.1	3.75
Merged-chr1-106369544-3	chr1	106369043	106370043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	MTEb|LTR|ERVL-MaLR	177088.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	28.6	34.56	25.9	73.54	42.45	62.7	21.12	29.63	25.61
Merged-chr17-84057280-3	chr17	84056784	84057784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21376.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	111.55	93.54	101.74	122.12	75.11	122.18	110.9	102.58	74.94
Merged-chr2-144264910-3	chr2	144264399	144265399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	1303.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	94.39	120.73	86.95	115.38	82.57	97.26	126.74	122.48	65.58
Merged-chr17-65718782-3	chr17	65718276	65719276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 2 of 6)	MTC|LTR|ERVL-MaLR	53976.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	72.08	78.33	56.42	87.71	46.65	73.14	111.96	101.26	48.71
Merged-chr12-86242809-3	chr12	86242305	86243305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	947.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	197.93	252.51	163.72	147.09	183.8	151.92	243.98	271.93	99.92
Merged-chr6-134898359-3	chr6	134897894	134898894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-200.0	NM_001362051	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	216.24	243.29	182.22	199.04	201.07	166.38	251.37	292.27	164.25
Merged-chr7-81523491-3	chr7	81522972	81523972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045299)	promoter-TSS (NR_045299)	-78.0	NR_045299	100504421.0	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	129.28	99.99	81.4	107.95	101.23	114.14	162.65	152.55	88.68
Merged-chr13-47232342-3	chr13	47231826	47232826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	38323.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	121.28	123.03	65.67	138.32	117.09	101.28	104.56	128.23	73.07
Merged-chr18-82913278-3	chr18	82912775	82913775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	-1357.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	282.59	264.49	145.22	258.42	207.13	159.15	286.23	333.39	111.17
Merged-chr1-92981300-1	chr1	92980800	92981800	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	2397.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.58	3.69	24.97	4.72	8.86	23.31	8.45	2.65	11.24
Merged-chr11-69914097-3	chr11	69913620	69914620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357906)	promoter-TSS (NM_001357906)	86.0	NM_019726	56310.0	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953|GPS-2	G protein pathway suppressor 2	protein-coding	407.3	256.66	271.94	286.75	262.64	250.78	274.61	248.06	144.27
Merged-chr14-99099792-3	chr14	99099292	99100292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028315)	promoter-TSS (NM_028315)	-22.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	68.07	70.5	40.7	63.42	55.51	64.3	49.64	66.33	46.22
Merged-chr11-69008496-3	chr11	69007973	69008973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159519)	promoter-TSS (NM_001159519)	-13.0	NM_001159519	237823.0	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	44.05	43.31	37.0	61.4	41.05	44.21	57.03	47.31	23.11
Merged-chr13-23887537-3	chr13	23887033	23888033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 10 of 12)	intron (NR_121611, intron 10 of 12)	17260.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	6.29	5.07	1.85	12.82	2.8	4.02	0.0	3.1	1.25
Merged-chr1-59316184-3	chr1	59315668	59316668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59262.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	21.74	25.8	20.35	29.01	26.59	27.33	9.51	14.59	9.99
Merged-chr18-80200660-3	chr18	80200182	80201182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-63.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	101.25	93.08	75.85	95.81	103.1	116.55	114.07	116.29	84.94
Merged-chr2-160067010-1	chr2	160066510	160067510	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50357.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	82.38	76.03	24.05	86.36	85.37	89.22	9.51	7.96	11.24
Merged-chr1-60865341-3	chr1	60864845	60865845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-43680.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	28.03	30.87	9.25	9.45	13.06	8.04	15.84	26.53	9.99
Merged-chr9-20892174-3	chr9	20891684	20892684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145610)	TTS (NM_145610)	4009.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	77.23	93.54	79.55	72.87	53.18	57.07	173.21	170.23	97.43
Merged-chr5-138161059-3	chr5	138160578	138161578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012002)	promoter-TSS (NM_012002)	-24.0	NM_012002	26893.0	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	24.03	13.36	39.77	20.24	11.2	18.49	22.18	22.11	13.74
Merged-chr4-123050930-3	chr4	123050437	123051437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151450, intron 8 of 9)	intron (NR_151450, intron 8 of 9)	34344.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	9.72	9.68	11.1	11.47	7.93	9.65	8.45	8.84	2.5
Merged-chr7-27198588-3	chr7	27198071	27199071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290513, intron 2 of 7)	PB1D7|SINE|Alu	-2300.0	NM_001285825	53607.0	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	66.93	91.7	75.85	63.42	51.32	106.9	95.06	74.28	69.32
Merged-chr19-4201692-3	chr19	4201211	4202211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011237)	promoter-TSS (NM_011237)	-108.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	103.54	100.91	58.27	112.0	102.63	114.14	105.62	105.24	63.08
Merged-chr9-106170911-3	chr9	106170412	106171412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029896)	promoter-TSS (NM_029896)	-17.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	182.49	150.22	172.04	179.47	141.35	117.35	156.32	130.88	92.43
Merged-chr16-17508885-3	chr16	17508384	17509384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331226)	promoter-TSS (NM_001331226)	201.0	NM_025808	66863.0	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	95.53	99.53	105.44	86.36	112.43	90.02	99.28	122.04	86.81
Merged-chr10-19170818-3	chr10	19170322	19171322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	3584.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	93.24	62.21	34.22	96.48	74.64	77.97	87.66	89.76	63.7
Merged-chr9-108991781-3	chr9	108991273	108992273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173019)	promoter-TSS (NM_173019)	-129.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	82.38	85.71	82.32	56.0	69.51	79.58	79.21	97.28	73.07
Merged-chr17-15657511-3	chr17	15657019	15658019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	25731.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	20.59	13.82	12.02	10.12	9.8	12.06	3.17	10.61	5.62
Merged-chr2-6723814-3	chr2	6723329	6724329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-2167.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	74.94	82.48	40.7	102.56	69.98	51.44	52.81	61.46	44.34
Merged-chr3-121291707-3	chr3	121291209	121292209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024178)	promoter-TSS (NM_024178)	-31.0	NR_155539	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	223.1	268.64	152.62	206.46	185.2	152.72	220.74	289.18	134.27
Merged-chr5-99459372-3	chr5	99458860	99459860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-206433.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	65.21	63.59	18.5	51.28	47.58	65.11	34.85	50.85	17.49
Merged-chr12-91779157-3	chr12	91778599	91779599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	CpG	7337.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	105.26	76.49	86.02	98.51	100.3	101.28	90.83	72.96	60.58
Merged-chr8-46941466-3	chr8	46940973	46941973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45414.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	239.12	249.28	101.74	219.96	188.47	147.09	191.17	218.43	119.28
Merged-chr3-50382922-2	chr3	50382417	50383417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 7 of 11)	intron (NM_011990, intron 7 of 11)	60696.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.58	2.76	0.0	2.7	5.13	5.63	2.11	1.33	1.25
Merged-chr5-143475566-5	chr5	143474973	143475973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 4 of 14)	intron (NM_144915, intron 4 of 14)	10980.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	125.28	105.98	59.2	151.14	121.29	108.51	87.66	84.9	84.94
Merged-chr5-122400847-3	chr5	122400341	122401341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8963.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	50.91	69.12	75.85	97.83	67.64	90.02	94.0	87.11	52.46
Merged-chr18-83828157-1	chr18	83827657	83828657	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	258405.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	49.2	57.14	80.47	43.86	33.12	40.99	27.46	29.18	28.73
Merged-chr14-50834157-3	chr14	50833695	50834695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 41 of 54)	intron (NM_009351, intron 41 of 54)	26279.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	105.26	105.06	70.3	116.73	79.31	98.06	128.85	113.64	70.57
Merged-chr10-40068885-3	chr10	40068389	40069389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43621.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	108.12	140.08	94.35	151.81	160.95	111.73	127.8	133.09	69.95
Merged-chr7-7299538-3	chr7	7299044	7300044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302386)	promoter-TSS (NM_001302386)	13.0	NM_001302387	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	396.43	397.2	307.08	366.37	439.92	314.28	457.33	504.07	224.21
Merged-chr11-116413142-3	chr11	116412659	116413659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-127.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	147.59	95.38	99.89	263.81	128.29	111.73	250.32	170.68	74.32
Merged-chr11-94322023-3	chr11	94321526	94322526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155068)	promoter-TSS (NR_155068)	-63.0	NM_001361573	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	332.94	346.97	246.04	319.82	327.49	270.88	321.08	326.76	197.98
Merged-chr1-34434952-3	chr1	34434442	34435442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1743.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	136.15	164.5	110.07	143.04	163.74	94.85	124.63	158.3	85.56
Merged-chr5-91962386-3	chr5	91961901	91962901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028429)	promoter-TSS (NR_028429)	155.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	326.64	346.51	273.79	308.35	257.05	260.43	332.7	323.22	185.48
Merged-chr2-105675424-3	chr2	105674835	105675835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013627)	promoter-TSS (NM_013627)	-409.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.29	2.3	0.0	0.0	4.2	1.61	4.22	0.88	5.0
Merged-chr10-54075794-3	chr10	54075294	54076294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038016)	promoter-TSS (NR_038016)	2.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	203.65	239.61	71.22	199.72	165.61	139.86	167.93	155.64	78.69
Merged-chr18-38993041-3	chr18	38992535	38993535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175164)	promoter-TSS (NM_175164)	-110.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	39.47	34.1	18.5	43.18	37.79	32.96	36.97	18.13	3.75
Merged-chr17-24170900-3	chr17	24170414	24171414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	310.05	258.96	178.52	215.91	159.55	202.55	294.68	303.33	149.89
Merged-chr13-81133683-3	chr13	81133121	81134121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	169547.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	177.34	167.73	121.17	272.59	174.47	134.23	214.41	221.53	113.66
Merged-chr2-22799794-3	chr2	22799297	22800297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	25470.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	159.03	167.26	80.47	159.91	121.76	127.0	128.85	150.78	76.19
Merged-chr11-16999641-3	chr11	16999163	17000163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	9055.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	30.32	27.65	14.8	57.35	22.86	50.64	39.08	38.03	21.23
Merged-chr9-15306207-3	chr9	15305700	15306700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027261)	promoter-TSS (NM_027261)	-14.0	NM_029248	75316.0	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	114.98	132.71	88.8	141.02	139.02	106.1	151.03	160.51	76.19
Merged-chrX-106131567-1	chrX	106131067	106132067	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11708.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	47.48	38.25	33.3	29.69	37.79	53.05	23.24	27.41	19.36
Merged-chr1-21070285-3	chr1	21069850	21070850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	8875.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	53.2	48.38	51.8	68.15	62.51	54.66	28.52	27.41	21.23
Merged-chr6-149309597-3	chr6	149309082	149310082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	168.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	266.0	317.94	240.49	275.96	250.05	245.16	306.29	283.87	172.99
Merged-chr6-99241817-3	chr6	99241318	99242318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24697.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	88.1	70.04	34.22	82.32	59.71	73.14	126.74	110.98	33.72
Merged-chrX-12087112-3	chrX	12086611	12087611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-6558.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	101.25	70.96	66.6	112.0	61.58	76.36	87.66	53.06	56.21
Merged-chr15-59784438-3	chr15	59783947	59784947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10512.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	80.09	53.45	33.3	131.57	82.57	86.01	92.94	75.61	33.1
Merged-chr17-69179367-3	chr17	69178875	69179875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20019.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	70.36	61.75	68.45	60.72	30.79	73.95	48.58	46.87	56.21
Merged-chr1-64482307-3	chr1	64481840	64482840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-50464.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	21.74	8.29	12.02	16.87	14.46	11.25	21.12	18.13	20.61
Merged-chr6-30693803-3	chr6	30693319	30694319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031998)	promoter-TSS (NM_031998)	-70.0	NR_130775	83922.0	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	29.75	46.54	40.7	29.01	32.19	32.15	38.02	33.6	33.72
Merged-chr7-29953964-3	chr7	29953400	29954400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178384, exon 1 of 6)	5' UTR (NM_178384, exon 1 of 6)	165.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	89.81	121.19	101.74	77.59	112.43	96.45	73.93	80.92	66.2
Merged-chr13-46735450-3	chr13	46734949	46735949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7600.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	150.45	230.39	108.22	159.23	202.0	144.68	138.36	160.95	91.18
Merged-chr12-25142476-3	chr12	25141984	25142984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13310.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	69.79	84.78	75.85	56.68	50.85	62.7	25.35	29.63	21.86
Merged-chr7-45589321-3	chr7	45588809	45589809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009737, exon 11 of 11)	exon (NM_009737, exon 11 of 11)	-14133.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	35.47	16.59	37.0	41.83	13.06	25.72	30.63	28.74	28.1
Merged-chr1-128713060-3	chr1	128712562	128713562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120763.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	88.67	77.41	22.2	147.76	95.63	126.19	49.64	40.24	34.97
Merged-chr11-5757999-3	chr11	5757504	5758504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	RMER16_Mm|LTR|ERVK	-4146.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	22.31	29.95	24.05	25.64	32.66	21.7	20.07	14.59	21.23
Merged-chr7-141949680-3	chr7	141949175	141950175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276763)	promoter-TSS (NM_001276763)	-76.0	NM_001009930	75770.0	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	7.44	1.38	1.85	4.05	1.87	1.61	2.11	0.88	0.0
Merged-chr5-123897502-3	chr5	123897003	123898003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9772.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	209.94	141.46	90.65	211.19	171.68	109.32	163.71	218.87	86.18
Merged-chrUn_JH584304-50560-1	chrUn_JH584304	50060	51060	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9129.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	40.14	16.8	0.0
Merged-chr6-97487930-3	chr6	97487432	97488432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-112.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	181.91	138.24	119.32	172.05	153.95	180.05	234.47	184.38	153.01
Merged-chr7-89481969-2	chr7	89481446	89482446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35640.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	6.86	9.22	5.55	9.45	5.13	12.06	3.17	3.54	3.12
Merged-chr10-63247681-3	chr10	63247192	63248192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359484, intron 3 of 22)	intron (NM_001359484, intron 3 of 22)	3895.0	NM_001359484	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	22.88	55.29	25.9	31.71	29.39	41.8	32.74	53.06	32.48
Merged-chr15-76303852-3	chr15	76303363	76304363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153122, intron 10 of 26)	RLTR20C2_MM|LTR|ERVK	3382.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	88.1	86.63	71.22	67.47	58.31	83.59	69.71	69.86	52.46
Merged-chr11-3154324-2	chr11	3153812	3154812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	ID4|SINE|ID	30291.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	44.62	95.38	67.52	78.27	100.3	119.76	16.9	14.59	153.63
Merged-chr16-91647785-3	chr16	91647292	91648292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-32.0	NM_019973	20658.0	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	474.8	481.98	340.38	422.37	417.06	287.76	371.78	422.27	291.03
Merged-chr17-26497658-3	chr17	26497151	26498151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10821.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	229.97	144.23	130.42	215.23	143.68	141.47	130.97	143.7	103.05
Merged-chr5-8346569-3	chr5	8346074	8347074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	21586.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	60.64	86.63	59.2	68.15	51.32	61.89	47.53	44.66	38.72
Merged-chr15-101268673-1	chr15	101268173	101269173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	1827.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	9.72	2.3	0.0	2.7	0.93	3.22	9.51	5.75	8.12
Merged-chr7-19225157-2	chr7	19224658	19225658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175668)	TTS (NM_175668)	-3231.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	9.72	14.28	7.4	16.87	15.39	24.92	5.28	2.21	6.25
Merged-chr3-105932728-3	chr3	105932241	105933241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033780)	promoter-TSS (NM_001033780)	-77.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	105.83	77.41	59.2	63.42	41.99	63.5	58.09	74.73	41.84
Merged-chr9-89199269-3	chr9	89198775	89199775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	2.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	93.82	99.53	32.37	116.05	70.91	36.97	161.6	126.02	28.73
Merged-chr2-153111519-3	chr2	153111024	153112024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	Tigger7|DNA|TcMar-Tigger	3056.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	88.1	82.94	90.65	94.46	50.38	68.32	115.12	84.9	80.56
Merged-chr7-16120025-3	chr7	16119492	16120492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133727, exon 1 of 12)	exon (NM_133727, exon 1 of 12)	116.0	NM_133727	70394.0	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	96.68	109.67	94.35	75.57	125.02	132.63	127.8	137.07	67.45
Merged-chr11-114915228-3	chr11	114914719	114915719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19167.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	88.1	68.66	54.57	183.52	105.9	155.13	102.45	124.25	73.07
Merged-chr12-112668154-3	chr12	112667693	112668693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	6083.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	37.18	38.71	59.2	66.8	71.84	70.73	82.38	57.92	43.09
Merged-chr5-30888541-3	chr5	30888048	30889048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294262)	promoter-TSS (NM_001294262)	-304.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	56.63	66.81	41.62	49.93	37.32	50.64	48.58	56.16	23.11
Merged-chr5-29569091-3	chr5	29568585	29569585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-157.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	75.51	77.41	92.5	62.75	61.58	52.25	113.01	47.31	28.73
Merged-chr11-32542960-3	chr11	32542471	32543471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9705.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	109.83	69.12	92.5	100.53	78.37	107.71	119.35	115.85	58.08
Merged-chr11-97702605-3	chr11	97702095	97703095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011971)	promoter-TSS (NM_011971)	-839.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	132.14	162.2	96.2	94.46	124.56	132.63	98.23	164.49	76.19
Merged-chr9-69439900-3	chr9	69439400	69440400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13783.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	31.46	26.73	19.42	42.51	20.53	40.19	50.7	28.3	14.36
Merged-chr18-89160040-3	chr18	89159530	89160530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37397.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	18.31	22.12	17.57	15.52	7.46	11.25	23.24	15.03	14.99
Merged-chr4-150008585-3	chr4	150008057	150009057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	466.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	222.53	145.15	151.69	185.55	152.55	153.52	180.61	156.09	100.55
Merged-chr6-38950530-3	chr6	38950010	38951010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31524.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	216.24	182.01	127.64	209.84	148.35	197.73	217.57	261.32	128.03
Merged-chr13-77135510-3	chr13	77135011	77136011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	-25.0	NM_001081353	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	71.51	61.75	29.6	72.87	61.11	35.37	59.15	48.64	39.97
Merged-chr1-105967760-3	chr1	105967257	105968257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	22525.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	151.59	151.6	121.17	147.09	117.56	115.75	59.15	64.56	30.6
Merged-chr11-107469069-3	chr11	107468589	107469589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	CpG	1631.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	266.0	271.4	223.84	292.83	252.85	212.2	256.65	324.99	143.64
Merged-chr14-31189535-3	chr14	31189017	31190017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 7 of 13)	intron (NM_001347583, intron 7 of 13)	17309.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	207.08	224.4	200.71	243.57	218.79	225.86	214.41	219.76	128.03
Merged-chr15-101262692-3	chr15	101262190	101263190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4156.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	73.22	45.16	49.95	75.57	53.18	77.16	85.55	96.83	86.81
Merged-chr2-71275484-3	chr2	71274942	71275942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63496.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	148.73	129.48	65.67	191.62	170.74	119.76	175.33	243.63	95.55
Merged-chr11-44518890-3	chr11	44518407	44519407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028862)	promoter-TSS (NM_028862)	-57.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	116.7	116.58	145.22	148.44	86.3	118.16	163.71	128.67	81.19
Merged-chr4-3678563-1	chr4	3678063	3679063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	CpG	442.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	421.6	437.74	339.46	488.5	464.18	383.41	399.24	447.03	239.19
Merged-chr8-120745449-3	chr8	120744940	120745940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6801.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	80.66	48.84	47.17	95.81	47.58	104.49	90.83	53.94	44.34
Merged-chr18-61176693-3	chr18	61176205	61177205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178277, exon 1 of 20)	5' UTR (NM_178277, exon 1 of 20)	344.0	NM_178277	106894.0	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	166.47	163.12	118.39	172.73	164.21	135.04	193.28	131.32	104.3
Merged-chr4-137367933-3	chr4	137367432	137368432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10173.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	205.94	204.59	86.02	285.41	207.6	147.9	164.76	179.52	114.29
Merged-chr6-50306806-3	chr6	50306284	50307284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-45015.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	24.03	20.74	8.32	34.41	15.86	24.11	20.07	25.2	8.74
Merged-chr9-96544257-3	chr9	96543757	96544757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 23 of 23)	intron (NM_053268, intron 23 of 23)	-65582.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	39.47	33.64	21.27	41.83	41.99	48.23	44.36	34.05	12.49
Merged-chr7-88303692-3	chr7	88303192	88304192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	25607.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	62.35	57.6	31.45	66.8	47.12	40.99	59.15	62.35	34.35
Merged-chr16-55691250-3	chr16	55690752	55691752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130886.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	12.59	8.75	6.47	10.8	6.06	13.66	6.34	8.84	7.49
Merged-chr13-101905890-3	chr13	101905388	101906388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137671.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	72.08	53.45	42.55	62.07	63.45	57.07	48.58	71.63	41.22
Merged-chr5-30961516-5	chr5	30961016	30962016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-1189.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	227.68	258.04	142.44	178.13	155.81	167.99	205.96	221.97	174.24
Merged-chr1-120075641-3	chr1	120075140	120076140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	143.59	217.95	160.94	169.35	188.0	229.08	264.05	303.33	128.65
Merged-chr11-117782305-3	chr11	117781821	117782821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195088)	promoter-TSS (NM_001195088)	24.0	NM_001195089	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	263.72	228.55	184.07	305.65	236.52	222.65	276.72	309.96	182.99
Merged-chr19-41369968-3	chr19	41369476	41370476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	15094.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	66.36	63.59	50.87	91.09	71.38	65.91	84.49	67.21	46.22
Merged-chr12-59012057-3	chr12	59011531	59012531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-14.0	NM_001361956	20334.0	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	120.7	142.84	138.74	132.24	107.76	141.47	176.38	167.14	89.93
Merged-chr3-88621138-3	chr3	88620628	88621628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	22.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	172.19	173.72	208.11	185.55	118.49	185.68	171.1	156.09	133.65
Merged-chr12-40569253-3	chr12	40568767	40569767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123214.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	45.76	49.76	49.02	70.17	83.51	49.83	41.19	25.2	39.97
Merged-chr4-33246168-3	chr4	33245662	33246662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033225, exon 2 of 2)	exon (NM_001033225, exon 2 of 2)	2625.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	173.9	161.27	73.07	123.47	99.37	81.99	164.76	220.64	79.32
Merged-chr4-149171689-3	chr4	149171176	149172176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4971.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	66.36	65.89	66.6	99.86	48.98	118.16	74.99	76.05	84.31
Merged-chr3-60472995-3	chr3	60472481	60473481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 1 of 9)	intron (NM_001253713, intron 1 of 9)	151.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	90.96	124.87	69.37	95.81	88.17	95.65	165.82	149.45	83.06
Merged-chr8-126596417-3	chr8	126595919	126596919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2983.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	89.24	88.47	25.9	106.61	98.43	71.54	104.56	90.64	42.47
Merged-chr1-58505023-3	chr1	58504520	58505520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271526)	promoter-TSS (NM_001271526)	89.0	NM_001271526	18393.0	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	34.32	21.66	28.67	33.06	35.92	42.6	42.25	40.24	29.98
Merged-chr6-125145192-3	chr6	125144695	125145695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302779)	promoter-TSS (NM_001302779)	-29.0	NR_126495	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	88.1	93.08	65.67	77.59	59.25	71.54	49.64	55.27	57.46
Merged-chr18-60526323-5	chr18	60525797	60526797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357462, exon 1 of 14)	exon (NM_001357462, exon 1 of 14)	143.0	NM_001357462	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	179.62	211.04	123.02	168.68	168.88	155.13	173.21	184.83	121.16
Merged-chr8-13676654-3	chr8	13676157	13677157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	930.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	215.09	184.31	140.59	217.26	188.0	161.56	209.12	252.48	148.64
Merged-chr7-112299845-2	chr7	112299342	112300342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	-68466.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	11.44	7.37	5.55	13.49	8.4	24.92	3.17	1.77	5.0
Merged-chr11-83536581-3	chr11	83536080	83537080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6062.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	45.19	17.51	33.3	41.83	26.59	20.9	34.85	26.97	18.74
Merged-chr16-30676031-3	chr16	30675512	30676512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76289.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	9.15	5.07	7.4	16.19	5.6	3.22	12.67	12.82	10.62
Merged-chr3-135485572-3	chr3	135485062	135486062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027288)	promoter-TSS (NM_027288)	-49.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	59.49	42.85	61.97	64.77	53.65	62.7	68.65	53.94	37.47
Merged-chr17-29442255-3	chr17	29441773	29442773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48772.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	92.67	75.11	98.05	54.65	26.59	38.58	86.61	57.92	48.09
Merged-chr19-10801251-3	chr19	10800752	10801752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	28806.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	25.17	14.28	11.1	7.42	3.73	3.22	5.28	3.54	3.75
Merged-chr7-119720759-3	chr7	119720263	119721263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145585, exon 2 of 5)	5' UTR (NM_145585, exon 2 of 5)	2856.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	68.65	57.14	36.07	93.11	79.77	73.14	70.76	56.16	34.35
Merged-chr6-30337099-3	chr6	30336623	30337623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32584.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	52.63	43.31	23.12	45.21	39.65	27.33	47.53	46.87	29.98
Merged-chr12-110682063-1	chr12	110681563	110682563	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025488, intron 1 of 5)	intron (NM_025488, intron 1 of 5)	556.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	8.58	4.15	7.4	3.37	3.27	7.23	2.11	3.1	1.25
Merged-chr4-109419184-3	chr4	109418682	109419682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	3535.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	18.31	11.98	9.25	18.89	10.26	8.84	11.62	7.96	3.75
Merged-chr9-107289770-4	chr9	107289244	107290244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316691)	promoter-TSS (NM_001316691)	133.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	141.87	79.72	42.55	200.39	158.15	86.81	269.33	284.31	129.28
Merged-chr12-51938144-3	chr12	51937645	51938645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177171, exon 13 of 36)	exon (NM_177171, exon 13 of 36)	33176.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	99.54	76.03	49.95	99.18	78.37	57.87	104.56	102.14	55.58
Merged-chr13-10253233-3	chr13	10252757	10253757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	107546.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	4.58	12.9	12.95	12.14	4.2	7.23	10.56	8.4	15.61
Merged-chr13-23432738-3	chr13	23432229	23433229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	62.35	101.83	53.65	69.5	49.45	69.93	77.1	126.46	59.95
Merged-chr9-103234729-3	chr9	103234220	103235220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4434.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	53.77	52.99	61.97	56.0	51.78	84.4	66.54	38.91	24.36
Merged-chr18-57845284-3	chr18	57844769	57845769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33409.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	48.05	63.59	48.1	78.27	58.31	35.37	80.27	79.15	25.61
Merged-chr1-185224851-3	chr1	185224359	185225359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 2 of 34)	MT2A|LTR|ERVL	-18067.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	46.91	34.56	23.12	46.56	30.32	24.11	22.18	21.67	23.73
Merged-chr6-113341756-3	chr6	113341252	113342252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133926, intron 2 of 11)	intron (NM_133926, intron 2 of 11)	2170.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	90.96	74.19	54.57	110.65	89.57	78.77	63.37	58.37	31.85
Merged-chr14-34502757-3	chr14	34502271	34503271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009758)	promoter-TSS (NM_009758)	-225.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	106.97	69.12	55.5	136.29	86.77	56.27	149.98	88.43	74.94
Merged-chr15-76715334-3	chr15	76714838	76715838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145471)	TTS (NM_145471)	4697.0	NM_001358893	223664.0	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	48.62	39.17	32.37	47.23	46.65	60.28	38.02	27.41	29.98
Merged-chr2-117404713-3	chr2	117404214	117405214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61837.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	120.13	118.88	106.37	100.53	75.57	116.55	134.14	176.42	96.8
Merged-chr5-17857980-1	chr5	17857480	17858480	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	RMER1B|Other|Other	-8188.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	44.05	39.17	20.35	45.21	42.92	37.78	30.63	35.37	25.61
Merged-chr1-85703523-1	chr1	85703023	85704023	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 17 of 19)	RLTR53B_Mm|LTR|ERVK	33083.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	223.67	179.71	176.67	208.49	142.75	183.26	239.75	209.59	129.9
Merged-chr8-70527745-3	chr8	70527263	70528263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199631)	promoter-TSS (NM_001199631)	20.0	NM_010223	14232.0	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|FKBPR38|Fkbp38|mFKBP38	FK506 binding protein 8	protein-coding	168.18	141.46	129.49	131.57	109.16	100.47	154.2	110.98	101.17
Merged-chr7-29156202-3	chr7	29155693	29156693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146023)	promoter-TSS (NM_001146023)	17.0	NM_001146023	73833.0	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	102.97	96.76	114.69	98.51	101.7	141.47	81.33	66.33	58.08
Merged-chr6-49263440-3	chr6	49262974	49263974	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	CpG	578.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	620.11	828.03	513.35	534.38	742.68	485.49	510.14	623.46	422.81
Merged-chr19-10842450-3	chr19	10841949	10842949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-95.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	407.3	305.5	222.91	412.93	297.17	247.57	337.98	353.29	187.36
Merged-chr7-44815883-3	chr7	44815428	44816428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030693)	promoter-TSS (NM_030693)	-160.0	NM_053074	18226.0	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	75.51	84.32	91.57	60.72	61.11	64.3	98.23	70.3	56.83
Merged-chr10-81414068-3	chr10	81413553	81414553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 2 of 8)	intron (NM_026756, intron 2 of 8)	2244.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	361.54	302.74	131.34	364.35	286.9	190.5	324.25	401.93	138.65
Merged-chr1-64448200-3	chr1	64447698	64448698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84606.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	13.73	12.44	7.4	8.1	11.2	6.43	7.39	5.75	6.25
Merged-chr9-4310935-3	chr9	4310439	4311439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164574, intron 1 of 2)	L2|LINE|L2	1123.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	66.36	67.74	40.7	65.45	50.85	28.94	55.98	80.47	44.97
Merged-chr7-102687290-3	chr7	102686790	102687790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001307998)	promoter-TSS (NM_001307998)	37.0	NM_198012	101700.0	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	21.74	17.05	18.5	15.52	29.39	35.37	26.4	22.11	13.74
Merged-chr1-91065083-3	chr1	91064580	91065580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	11636.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	109.26	115.2	54.57	103.91	82.57	62.7	77.1	64.11	34.97
Merged-chr9-14758794-3	chr9	14758291	14759291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029306, intron 3 of 3)	intron (NM_029306, intron 3 of 3)	-6669.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	23.45	9.22	7.4	18.22	6.53	12.06	13.73	7.07	6.87
Merged-chr12-108994780-3	chr12	108994268	108995268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 4 of 6)	intron (NM_177602, intron 4 of 6)	73449.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	7.44	11.06	7.4	13.49	10.26	12.06	15.84	19.01	11.24
Merged-chrX-135009292-3	chrX	135008794	135009794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175446)	promoter-TSS (NM_175446)	-85.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	151.59	144.69	112.84	144.39	138.09	134.23	127.8	103.02	89.93
Merged-chr16-91734965-3	chr16	91734461	91735461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	Lx8|LINE|L1	5590.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	34.9	47.46	45.32	54.65	60.65	69.13	59.15	52.18	41.22
Merged-chr1-82839464-3	chr1	82838972	82839972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010472)	promoter-TSS (NM_010472)	12.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	114.98	64.05	85.1	125.5	57.38	79.58	132.02	38.03	43.09
Merged-chr2-22727336-3	chr2	22726839	22727839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-46988.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	18.31	30.41	22.2	12.82	12.13	6.43	42.25	38.03	21.23
Merged-chr1-191576036-3	chr1	191575532	191576532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029766)	promoter-TSS (NM_029766)	396.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	116.13	82.48	103.59	86.36	76.97	93.24	81.33	75.61	46.84
Merged-chr16-30945171-3	chr16	30944656	30945656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136276.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	110.41	92.62	42.55	120.1	64.84	64.3	54.92	56.16	59.95
Merged-chr3-142530228-3	chr3	142529728	142530728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083312)	promoter-TSS (NM_001083312)	-108.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	64.07	76.95	61.05	80.29	56.45	90.02	77.1	78.71	53.71
Merged-chr19-6334916-3	chr19	6334421	6335421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168488)	promoter-TSS (NM_001168488)	-58.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	46.91	50.69	42.55	43.86	43.85	46.62	39.08	38.91	24.98
Merged-chr7-140941508-3	chr7	140941009	140942009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153832, exon 1 of 12)	non-coding (NR_153832, exon 1 of 12)	118.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	238.55	212.42	150.77	291.48	172.61	176.03	210.18	195.88	111.17
Merged-chr7-128238240-6	chr7	128237740	128238740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177001)	promoter-TSS (NM_177001)	-209.0	NM_177001	100043133.0	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	292.32	243.75	155.39	292.83	230.92	200.14	228.14	238.77	114.29
Merged-chr2-120609357-3	chr2	120608851	120609851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025475)	promoter-TSS (NM_025475)	7.0	NM_001159612	66606.0	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	299.76	299.05	163.72	340.73	285.5	282.13	215.46	246.29	105.55
Merged-chrX-152232852-3	chrX	152232341	152233341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013668)	promoter-TSS (NM_013668)	-386.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	46.34	58.52	54.57	52.63	40.12	35.37	42.25	52.62	41.22
Merged-chr6-47454572-5	chr6	47454095	47455095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-162.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	426.75	372.77	316.33	396.06	307.43	292.58	339.04	202.51	215.46
Merged-chr6-89421719-3	chr6	89421228	89422228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59115.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	95.53	90.31	56.42	71.52	55.98	56.27	61.26	50.85	28.73
Merged-chr3-138143827-3	chr3	138143324	138144324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163457)	promoter-TSS (NM_001163457)	25.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	356.96	493.96	346.86	346.8	511.29	331.96	377.06	548.73	269.17
Merged-chr11-101278974-3	chr11	101278471	101279471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026618)	promoter-TSS (NM_026618)	-23.0	NM_026618	52469.0	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	30.32	38.71	37.0	51.28	27.99	56.27	51.75	55.27	16.24
Merged-chr8-25601483-3	chr8	25600977	25601977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308482)	promoter-TSS (NM_001308482)	-124.0	NM_001308481	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	689.9	673.21	391.26	613.99	700.7	486.29	502.74	676.52	287.28
Merged-chr3-108911194-3	chr3	108910683	108911683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025845, exon 1 of 6)	exon (NM_025845, exon 1 of 6)	546.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	485.67	512.39	385.71	496.59	504.76	299.01	423.53	454.11	277.91
Merged-chr1-131688678-3	chr1	131688185	131689185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311096)	promoter-TSS (NM_001311096)	-10.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	112.12	99.07	57.35	133.59	83.04	92.44	143.64	132.21	70.57
Merged-chr9-121710277-3	chr9	121709784	121710784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026794)	promoter-TSS (NM_026794)	-105.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	223.1	211.04	139.67	190.95	243.52	124.59	203.84	239.65	95.55
Merged-chrM-11069-1	chrM	10569	11569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr		Intergenic											157.31	155.75	24.05	100.53	34.52	26.53	68.65	22.11	21.86
Merged-chr16-45158748-3	chr16	45158247	45159247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356453)	promoter-TSS (NM_001356453)	-74.0	NM_028756	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	173.33	194.91	144.29	178.13	220.19	154.33	178.5	183.06	122.41
Merged-chr12-55450553-3	chr12	55450069	55451069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	42078.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	39.47	23.96	15.72	65.45	35.92	38.58	53.87	47.75	25.61
Merged-chr1-36001102-3	chr1	36000574	36001574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-67326.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.58	11.06	1.85	10.12	12.6	8.04	16.9	13.71	14.99
Merged-chr4-105716918-3	chr4	105716424	105717424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-524289.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	31.46	36.4	29.6	33.06	30.32	47.42	43.3	49.08	41.84
Merged-chr14-20929328-3	chr14	20928902	20929902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009502)	promoter-TSS (NM_009502)	4.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	76.08	71.42	31.45	97.83	93.3	90.02	64.43	64.11	42.47
Merged-chr6-148578281-1	chr6	148577781	148578781	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	36028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	105.26	96.3	62.9	78.94	42.92	59.48	141.53	128.23	66.2
Merged-chr10-12922699-3	chr10	12922206	12923206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038027, exon 1 of 4)	non-coding (NR_038027, exon 1 of 4)	421.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	45.19	52.07	38.85	52.63	61.11	50.64	61.26	68.98	29.98
Merged-chr3-51195460-3	chr3	51194968	51195968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28979.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	40.62	36.4	20.35	65.45	62.98	40.99	55.98	46.87	43.72
Merged-chr10-127289949-3	chr10	127289439	127290439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-854.0	NM_007837	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	676.17	644.64	379.23	743.54	650.31	422.79	587.24	795.02	274.79
Merged-chr12-32215334-3	chr12	32214838	32215838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6689.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	16.59	26.26	21.27	28.34	8.4	23.31	12.67	17.69	13.12
Merged-chr2-45013502-3	chr2	45013012	45014012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	9665.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	22.88	19.35	11.1	20.24	14.93	12.86	14.79	11.94	34.35
Merged-chr2-150896037-3	chr2	150895526	150896526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	MLT1A0-int|LTR|ERVL-MaLR	8705.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	207.08	209.2	86.02	211.19	159.08	151.92	172.16	187.92	103.05
Merged-chr2-48716427-3	chr2	48715917	48716917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97692.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	11.44	9.22	5.55	11.47	7.46	4.82	10.56	10.17	6.25
Merged-chr8-107056760-3	chr8	107056245	107057245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164472)	promoter-TSS (NM_001164472)	-8.0	NM_139229	97484.0	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	128.14	130.4	86.95	104.58	91.44	99.67	116.18	107.0	71.2
Merged-chrX-167484047-1	chrX	167483547	167484547	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 17 of 19)	intron (NM_001033330, intron 17 of 19)	-101298.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	6.86	1.38	2.77	1.35	3.73	1.61	2.11	0.88	0.0
Merged-chr6-31112494-1	chr6	31111994	31112994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-49401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	197.36	190.76	118.39	237.5	226.72	209.79	250.32	260.44	154.88
Merged-chr5-103721687-3	chr5	103721158	103722158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32504.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	103.54	132.71	78.62	53.3	66.71	53.85	120.41	117.17	89.93
Merged-chr8-94365733-3	chr8	94365219	94366219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-20710.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	175.05	180.17	111.92	155.86	120.36	108.51	87.66	93.3	62.45
Merged-chr11-84869846-1	chr11	84869346	84870346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_131201)	promoter-TSS (NR_131201)	-159.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	339.8	304.12	269.16	270.56	308.36	286.15	242.92	275.03	240.44
Merged-chr6-120822355-3	chr6	120821870	120822870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	328.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	414.74	384.29	211.81	396.06	464.64	351.26	327.42	448.36	222.96
Merged-chr17-33779486-3	chr17	33778958	33779958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2117.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	65.79	23.5	37.0	93.79	50.38	61.09	31.69	19.01	32.48
Merged-chr3-96601039-3	chr3	96600550	96601550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163170)	promoter-TSS (NM_001163170)	-83.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	26.31	15.67	11.1	43.18	25.19	29.74	42.25	21.22	14.99
Merged-chr10-37376410-1	chr10	37375910	37376910	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-237484.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	8.58	4.61	3.7	4.05	9.8	6.43	6.34	7.07	9.99
Merged-chr15-100687239-3	chr15	100686745	100687745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 1 of 7)	intron (NM_033612, intron 1 of 7)	675.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	34.32	14.75	9.25	10.12	4.67	3.22	20.07	9.29	11.24
Merged-chr9-14867189-3	chr9	14866709	14867709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010287, intron 3 of 3)	intron (NM_010287, intron 3 of 3)	6999.0	NM_010287	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	6.86	5.07	5.55	14.84	1.4	1.61	1.06	2.65	5.0
Merged-chr4-119127449-3	chr4	119126952	119127952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	18707.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	32.61	32.72	34.22	26.31	26.59	25.72	40.14	36.7	32.48
Merged-chr13-111490154-4	chr13	111489777	111490777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122963)	promoter-TSS (NM_001122963)	-150.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	390.14	268.18	209.04	362.32	174.01	200.95	293.62	184.83	144.89
Merged-chr10-77530282-3	chr10	77529783	77530783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008404)	promoter-TSS (NM_008404)	-65.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	105.26	106.9	93.42	121.45	110.1	104.49	157.37	183.5	39.35
Merged-chr5-121451400-3	chr5	121450913	121451913	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	1061.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	153.31	182.47	112.84	131.57	123.62	90.83	111.96	157.85	114.29
Merged-chr14-75176786-3	chr14	75176306	75177306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	40381.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	189.35	151.14	130.42	157.21	126.42	114.94	207.01	210.03	114.29
Merged-chr10-66852896-3	chr10	66852409	66853409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67475.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	483.96	480.6	221.99	537.75	527.15	321.52	486.9	668.56	189.86
Merged-chr15-19857819-2	chr15	19857326	19858326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	672453.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	82.95	113.35	55.5	0.0	1.87	2.41	87.66	90.64	56.21
Merged-chr12-110764750-3	chr12	110764245	110765245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	26813.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	72.65	82.94	55.5	77.59	49.45	72.34	79.21	59.69	51.21
Merged-chr6-126849126-3	chr6	126848652	126849652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025358)	promoter-TSS (NM_025358)	-8.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	53.2	55.75	50.87	62.75	48.98	46.62	74.99	68.54	27.48
Merged-chr15-101973894-3	chr15	101973397	101974397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19610.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	57.78	72.8	74.0	69.5	77.91	116.55	88.72	88.43	69.95
Merged-chr16-4558721-3	chr16	4558210	4559210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	CpG	1010.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	56.06	55.29	63.82	71.52	68.11	76.36	71.82	93.74	39.35
Merged-chr5-120570411-3	chr5	120569920	120570920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	18193.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	50.34	38.25	14.8	56.0	45.72	49.03	46.47	35.37	24.36
Merged-chr2-50842092-3	chr2	50841562	50842562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67622.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	27.46	17.51	17.57	7.42	8.4	3.22	9.51	3.1	6.25
Merged-chr19-6235890-3	chr19	6235395	6236395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-55.0	NM_198168	225849.0	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	248.84	215.19	144.29	221.98	148.35	144.68	173.21	207.82	121.16
Merged-chr10-81037342-3	chr10	81036843	81037843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358898)	promoter-TSS (NM_001358898)	-12.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	45.19	36.86	62.9	37.78	26.12	35.37	48.58	32.28	36.85
Merged-chr14-78732849-3	chr14	78732355	78733355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-126.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	38.33	50.23	28.67	49.93	64.38	35.37	23.24	17.24	5.62
Merged-chr9-65346110-3	chr9	65345605	65346605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016688)	promoter-TSS (NM_016688)	37.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	346.09	284.76	292.29	331.29	191.73	282.13	313.69	199.86	194.23
Merged-chr10-89462011-3	chr10	89461501	89462501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009108, intron 7 of 8)	intron (NM_009108, intron 7 of 8)	-18034.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	9.72	3.23	1.85	4.05	4.2	4.02	7.39	1.77	2.5
Merged-chr6-124741165-3	chr6	124740658	124741658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013535)	promoter-TSS (NM_013535)	-79.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	245.41	239.15	173.89	230.75	186.14	179.24	214.41	282.54	146.14
Merged-chr9-106270066-3	chr9	106269574	106270574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10987.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	6.86	7.37	1.85	11.47	7.93	9.65	11.62	1.77	6.25
Merged-chr11-113172650-1	chr11	113172150	113173150	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	29188.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.72	0.92	3.7	1.35	0.0	0.0	50.7	45.54	28.73
Merged-chr1-159231651-1	chr1	159231151	159232151	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360878)	promoter-TSS (NM_001360878)	-549.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	93.24	103.68	86.95	70.17	78.37	98.06	124.63	121.6	103.67
Merged-chr3-89394925-5	chr3	89394381	89395381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	591.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	147.59	144.69	116.54	116.05	81.17	118.96	124.63	150.78	110.54
Merged-chr9-78588661-3	chr9	78588180	78589180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276452)	promoter-TSS (NM_001276452)	-635.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	267.15	315.64	193.32	275.96	274.31	249.17	252.43	341.35	202.97
Merged-chr5-62766344-3	chr5	62765853	62766853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178407)	promoter-TSS (NM_178407)	-176.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	90.96	76.95	54.57	94.46	63.91	64.3	85.55	72.52	55.58
Merged-chr9-60991722-3	chr9	60991235	60992235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25334.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	68.65	77.41	66.6	64.77	55.98	47.42	73.93	75.61	60.58
Merged-chr8-84815724-3	chr8	84815217	84816217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033145, exon 2 of 2)	non-coding (NR_033145, exon 2 of 2)	7106.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	12.01	3.69	3.7	8.77	2.33	4.82	6.34	4.86	1.25
Merged-chr4-132167632-3	chr4	132167148	132168148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23162.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	7.44	3.69	9.25	4.05	2.33	16.08	7.39	4.42	6.87
Merged-chr12-111678055-3	chr12	111677564	111678564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099792)	promoter-TSS (NM_001099792)	-41.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	152.17	158.05	164.64	129.55	155.81	174.42	163.71	226.39	91.18
Merged-chr9-103111785-1	chr9	103111285	103112285	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173781)	promoter-TSS (NM_173781)	-289.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.0	0.46	0.0	0.0	0.93	0.0	43.3	23.88	9.99
Merged-chr2-45114099-3	chr2	45113595	45114595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-816.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	86.38	126.25	65.67	86.36	70.91	133.43	130.97	145.47	68.7
Merged-chr2-35496738-1	chr2	35496238	35497238	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35289.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	122.42	85.71	76.77	105.93	93.77	77.97	72.88	64.56	48.71
Merged-chr7-28378618-3	chr7	28378116	28379116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011756, intron 1 of 1)	CpG	612.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	247.7	139.16	183.14	254.37	138.09	173.62	238.7	204.72	124.91
Merged-chr6-86396152-3	chr6	86395662	86396662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	988.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	181.91	170.03	114.69	182.85	133.42	102.88	158.43	154.32	81.81
Merged-chr12-116281141-3	chr12	116280616	116281616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028731)	promoter-TSS (NM_028731)	-106.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	172.19	143.76	135.04	159.23	125.49	137.45	166.88	152.99	115.54
Merged-chr8-71951022-3	chr8	71950526	71951526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164581)	promoter-TSS (NM_001164581)	-40.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	65.79	78.33	74.0	63.42	89.57	90.83	87.66	76.94	37.47
Merged-chr3-36475836-3	chr3	36475332	36476332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105976)	promoter-TSS (NR_105976)	55.0	NM_009673	11747.0	Mm.1620	NM_009673	ENSMUSG00000027712	Anxa5	Anx5|R74653	annexin A5	protein-coding	177.34	201.82	126.72	208.49	188.94	183.26	171.1	207.38	160.5
Merged-chr5-65102824-3	chr5	65102327	65103327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4741.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	32.61	31.33	16.65	49.25	35.45	28.94	42.25	36.26	36.22
Merged-chr10-62190163-3	chr10	62189679	62190679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	4048.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	33.75	23.5	11.1	44.53	10.73	29.74	23.24	14.15	9.37
Merged-chr14-34673863-3	chr14	34673371	34674371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301330)	promoter-TSS (NM_001301330)	-57.0	NM_001004436	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	281.45	240.99	231.24	287.43	199.2	184.87	246.09	179.52	151.14
Merged-chr5-135582573-3	chr5	135582080	135583080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-9531.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	114.98	71.88	40.7	144.39	83.51	75.56	42.25	69.42	38.72
Merged-chr4-135987236-3	chr4	135986758	135987758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025411)	promoter-TSS (NM_025411)	-14.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	125.85	93.54	87.87	126.17	91.9	90.02	107.73	76.94	73.69
Merged-chr2-101177991-3	chr2	101177487	101178487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-446761.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	12.59	11.06	5.55	33.74	25.66	45.01	22.18	29.18	14.99
Merged-chr1-44119681-6	chr1	44119176	44120176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	148.0	NM_001357048	246229.0	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	76.66	55.29	62.9	87.71	50.38	88.42	76.05	77.82	50.59
Merged-chr18-37883679-3	chr18	37883205	37884205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-29045.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	63.5	105.06	46.25	56.0	82.57	69.13	58.09	91.53	43.09
Merged-chr3-87515927-4	chr3	87515382	87516382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9696.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	327.79	328.54	119.32	369.75	313.03	222.65	130.97	114.96	37.47
Merged-chr15-74672644-3	chr15	74672149	74673149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-79.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	34.9	29.95	56.42	40.48	33.59	54.66	32.74	32.28	27.48
Merged-chr13-44482880-3	chr13	44482396	44483396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	43169.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	17.73	14.28	18.5	25.64	23.33	13.66	30.63	42.89	24.98
Merged-chr11-98587309-3	chr11	98586833	98587833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025661)	promoter-TSS (NM_025661)	-88.0	NM_025661	66612.0	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	105.26	92.62	81.4	116.05	116.63	76.36	129.91	122.04	45.59
Merged-chr5-148678704-1	chr5	148678204	148679204	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10B2|LTR|ERVK	-63136.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.0	2.3	0.0	0.0	1.4	0.8	9.51	3.1	17.49
Merged-chr13-113580045-3	chr13	113579538	113580538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38526.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	37.18	27.19	22.2	21.59	19.13	20.9	20.07	14.15	11.87
Merged-chr1-75521511-3	chr1	75521001	75522001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027886)	promoter-TSS (NM_027886)	-28.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	239.12	319.78	172.97	294.18	373.21	184.87	316.86	329.41	157.38
Merged-chr14-70351458-3	chr14	70350973	70351973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135151)	promoter-TSS (NM_001135151)	-49.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	26.89	19.81	9.25	51.28	30.79	25.72	39.08	20.34	6.25
Merged-chr18-23754568-3	chr18	23754074	23755074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 1 of 7)	intron (NM_001162941, intron 1 of 7)	849.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	45.19	34.56	10.17	38.46	17.73	9.65	28.52	18.57	7.49
Merged-chr17-10392891-3	chr17	10392396	10393396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63320.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	282.02	204.13	132.27	304.97	176.81	190.5	192.23	151.66	113.04
Merged-chr9-41088149-3	chr9	41087656	41088656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	L2b|LINE|L2	-8650.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	20.59	18.89	22.2	31.71	12.13	19.29	51.75	30.51	14.99
Merged-chr10-60705320-3	chr10	60704830	60705830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8840.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	41.76	12.9	29.6	56.0	30.32	26.53	40.14	33.16	12.49
Merged-chr3-103172855-3	chr3	103172370	103173370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356330, intron 2 of 5)	RCHARR1|DNA|hAT-Charlie	1215.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	53.2	58.06	14.8	75.57	49.45	28.94	60.2	57.92	18.11
Merged-chr18-75005793-3	chr18	75005274	75006274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001181)	promoter-TSS (NM_001001181)	-65.0	NM_001358306	407819.0	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	287.17	306.42	219.21	205.79	264.04	188.89	254.54	267.07	172.37
Merged-chr4-62349633-3	chr4	62349140	62350140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	10956.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	35.47	58.52	33.3	39.13	40.59	44.21	31.69	39.8	46.84
Merged-chr19-40998689-3	chr19	40998194	40999194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4159.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	57.21	45.16	32.37	72.87	82.11	65.91	50.7	42.45	24.98
Merged-chr4-133553261-3	chr4	133552776	133553776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011850)	promoter-TSS (NM_011850)	-100.0	NM_011850	23957.0	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	10.3	6.91	2.77	5.4	4.2	4.82	12.67	6.19	2.5
Merged-chr9-110476774-4	chr9	110476270	110477270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010628)	promoter-TSS (NM_010628)	-76.0	NM_177771	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	154.45	190.3	105.44	161.26	142.29	109.32	101.39	133.98	67.45
Merged-chr17-33955298-2	chr17	33954806	33955806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357330)	promoter-TSS (NM_001357330)	335.0	NM_011296	20084.0	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	281.45	241.91	178.52	248.3	236.05	182.46	215.46	240.54	153.63
Merged-chr12-12230282-3	chr12	12229783	12230783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	-31856.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	171.62	161.27	83.25	138.99	108.23	106.9	122.52	132.65	89.93
Merged-chr2-181187232-3	chr2	181186729	181187729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356427)	promoter-TSS (NM_001356427)	-18.0	NM_025598	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	200.22	211.96	212.74	225.36	274.77	273.29	247.15	320.13	184.86
Merged-chr11-118470411-3	chr11	118469908	118470908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6424.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	84.66	108.75	85.1	118.08	89.57	129.41	57.03	48.64	52.46
Merged-chr7-88277399-3	chr7	88276909	88277909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-676.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	270.58	232.7	141.52	238.18	215.06	205.77	184.83	249.38	95.55
Merged-chr4-140701283-3	chr4	140700785	140701785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173867)	promoter-TSS (NM_173867)	-188.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	41.19	63.59	59.2	63.42	85.84	89.22	87.66	100.37	53.71
Merged-chrX-167102129-1	chrX	167101629	167102629	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31759.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	5.15	5.53	3.7	8.77	7.46	10.45	8.45	7.96	2.5
Merged-chr4-102515132-3	chr4	102514595	102515595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-54965.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	71.51	94.0	87.87	1.35	0.0	0.0	76.05	57.48	53.08
Merged-chr2-120296300-3	chr2	120295771	120296771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7202.0	NM_001024137	78390.0	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	72.08	51.61	63.82	58.7	32.19	28.94	91.89	78.71	49.96
Merged-chr3-145105634-3	chr3	145105134	145106134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6528.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	28.6	17.97	16.65	39.81	21.46	12.06	19.01	11.05	16.24
Merged-chr19-16015874-3	chr19	16015391	16016391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30816.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	44.62	46.54	36.07	37.11	28.46	48.23	81.33	58.81	44.97
Merged-chr2-150831235-3	chr2	150830726	150831726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153781, exon 20 of 20)	3' UTR (NM_153781, exon 20 of 20)	11344.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	102.97	109.67	84.17	101.21	84.44	102.88	117.24	102.14	76.19
Merged-chr6-38550766-3	chr6	38550266	38551266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-568.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	253.99	359.87	263.61	275.28	324.22	221.85	238.7	329.41	222.96
Merged-chr3-115997121-3	chr3	115996640	115997640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 2 of 10)	U6|snRNA|snRNA	10266.0	NM_023214	66500.0	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	34.9	37.78	31.45	30.36	26.12	30.54	27.46	27.41	13.74
Merged-chr16-91044542-3	chr16	91044034	91045034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026110)	promoter-TSS (NM_026110)	-155.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	206.51	149.29	119.32	194.32	139.95	115.75	216.52	160.95	112.42
Merged-chr11-87470996-3	chr11	87470482	87471482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	43391.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	112.12	76.95	74.0	126.85	97.5	77.16	111.96	118.94	58.71
Merged-chr15-53529658-3	chr15	53529155	53530155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	84624.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	9.72	10.14	2.77	5.4	9.8	22.51	8.45	6.63	9.37
Merged-chr15-50109025-2	chr15	50108472	50109472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	780077.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	9.72	12.44	16.65	3.37	1.87	4.82	13.73	10.17	18.74
Merged-chr14-51128971-3	chr14	51128472	51129472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030098)	promoter-TSS (NM_030098)	-65.0	NM_030098	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	25.17	30.41	36.07	24.96	23.33	24.92	28.52	34.49	31.85
Merged-chr6-113494587-3	chr6	113494047	113495047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172487, exon 4 of 4)	exon (NM_172487, exon 4 of 4)	7271.0	NM_172487	210673.0	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	92.67	61.28	45.32	115.38	89.57	85.2	106.67	103.47	69.95
Merged-chr9-40765763-3	chr9	40765253	40766253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-35520.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	85.24	83.4	74.0	89.74	85.37	60.28	64.43	80.92	46.84
Merged-chr1-155065444-3	chr1	155064923	155065923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 4 of 6)	L2b|LINE|L2	17841.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	79.52	45.16	30.52	88.39	34.06	34.56	57.03	53.5	19.98
Merged-chr1-184034364-3	chr1	184033895	184034895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	14.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	295.75	245.14	169.27	282.71	188.47	208.98	216.52	210.47	129.9
Merged-chr15-59729014-3	chr15	59728517	59729517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	65942.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	315.2	342.36	198.87	333.99	268.71	213.0	272.5	340.91	180.49
Merged-chr12-3834637-3	chr12	3834120	3835120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	27460.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	101.83	84.32	53.65	105.93	66.24	65.91	134.14	91.97	40.59
Merged-chr4-131873485-3	chr4	131872966	131873966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020587)	promoter-TSS (NM_020587)	-173.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	336.94	301.35	264.54	270.56	225.79	200.95	282.0	202.95	164.88
Merged-chr16-36717676-3	chr16	36717198	36718198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	23720.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	137.86	137.77	72.15	151.14	115.69	104.49	103.51	106.56	75.57
Merged-chr15-58980347-3	chr15	58979808	58980808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	46498.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	22.88	32.25	7.4	49.93	50.38	40.19	25.35	25.65	8.12
Merged-chr10-77610322-3	chr10	77609841	77610841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301673, intron 2 of 3)	L1MC5|LINE|L1	-3368.0	NR_125903	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	48.62	34.1	49.02	72.87	56.91	36.97	41.19	50.41	34.97
Merged-chr12-98290671-3	chr12	98290181	98291181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	22046.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	77.23	94.92	73.07	98.51	88.64	97.26	106.67	95.51	56.21
Merged-chr4-141858787-3	chr4	141858272	141859272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-12413.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	160.75	158.05	98.97	149.11	104.96	92.44	174.27	170.23	86.81
Merged-chr6-134068633-3	chr6	134068146	134069146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	32946.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	66.36	63.13	42.55	65.45	37.32	60.28	52.81	41.12	43.09
Merged-chr2-33755843-3	chr2	33755361	33756361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 7 of 9)	intron (NM_175184, intron 7 of 9)	-49955.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	27.46	14.28	31.45	41.16	34.99	16.08	21.12	22.11	8.74
Merged-chr2-30712173-3	chr2	30711649	30712649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9061.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	167.04	120.73	55.5	197.69	174.01	142.27	68.65	73.84	50.59
Merged-chr6-120151896-3	chr6	120151395	120152395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	ORR1F|LTR|ERVL-MaLR	-41928.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	26.89	41.93	19.42	82.99	62.51	44.21	44.36	35.82	24.98
Merged-chr18-36018293-3	chr18	36017778	36018778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53448.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	185.35	146.07	124.87	128.87	154.41	106.9	161.6	101.7	83.06
Merged-chr4-25281884-3	chr4	25281378	25282378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355512)	promoter-TSS (NM_001355512)	-57.0	NM_001355512	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	126.42	156.21	97.12	108.63	123.16	117.35	134.14	104.79	104.3
Merged-chr2-103945091-3	chr2	103944601	103945601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12894.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	100.11	74.19	56.42	76.92	63.91	49.83	53.87	62.35	59.33
Merged-chr13-43802959-3	chr13	43802451	43803451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289915, exon 5 of 5)	3' UTR (NM_001289915, exon 5 of 5)	17839.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	17.73	10.14	9.25	20.92	14.93	23.31	19.01	9.29	15.61
Merged-chrX-73054061-3	chrX	73053581	73054581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10706.0	NM_153169	245468.0	Mm.256249	NM_153169	ENSMUSG00000046287	Pnma3	-	paraneoplastic antigen MA3	protein-coding	4.0	4.61	0.0	6.75	5.13	6.43	3.17	2.21	2.5
Merged-chr17-88509269-3	chr17	88508722	88509722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20902.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	58.92	29.49	16.65	39.13	28.46	30.54	20.07	19.46	10.62
Merged-chr3-69163283-3	chr3	69162774	69163774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	32041.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	14.87	22.12	26.82	32.39	26.12	20.9	20.07	31.39	9.37
Merged-chr4-140961259-3	chr4	140960763	140961763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023374)	promoter-TSS (NM_023374)	-8.0	NM_001355515	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	270.58	236.38	183.14	211.86	205.73	175.23	224.97	241.42	128.03
Merged-chr15-5116511-3	chr15	5116007	5117007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	-106.0	NM_026069	67281.0	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	77.23	112.89	47.17	110.65	122.69	90.83	143.64	101.26	45.59
Merged-chr6-49367743-3	chr6	49367246	49368246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172216)	promoter-TSS (NM_001172216)	7.0	NM_172727	231946.0	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	9.15	7.83	3.7	16.87	12.13	25.72	20.07	19.46	12.49
Merged-chr15-84256475-3	chr15	84255990	84256990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	24447.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	65.21	64.51	37.92	52.63	45.72	41.8	55.98	53.06	28.1
Merged-chr4-108780737-3	chr4	108780244	108781244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	CpG	344.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	46.91	27.65	39.77	70.17	55.51	33.76	29.57	8.4	11.24
Merged-chr17-69199885-4	chr17	69199429	69200429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	40573.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	162.46	112.89	79.55	157.21	111.03	104.49	170.05	141.49	88.68
Merged-chr6-40573810-3	chr6	40573308	40574308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2420.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	34.32	43.31	25.9	47.9	18.19	50.64	12.67	18.13	25.61
Merged-chr10-92861775-1	chr10	92861275	92862275	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-139357.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	6.29	5.99	0.0	2.7	0.47	5.63	3.17	3.1	1.87
Merged-chr6-39573968-3	chr6	39573476	39574476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178873)	promoter-TSS (NM_178873)	100.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	61.21	44.7	39.77	49.25	63.91	72.34	51.75	60.13	29.98
Merged-chr18-31911206-3	chr18	31910667	31911667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026006, exon 1 of 1)	exon (NM_026006, exon 1 of 1)	736.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	221.38	199.06	240.49	182.85	182.4	201.75	234.47	154.76	171.12
Merged-chr9-89198910-1	chr9	89198410	89199410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-363.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	71.51	85.71	25.9	91.76	56.45	30.54	109.84	101.26	19.36
Merged-chr10-13968068-3	chr10	13967530	13968530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	1651.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	192.21	120.73	74.92	178.8	117.09	148.7	157.37	109.66	81.81
Merged-chr8-95808108-3	chr8	95807617	95808617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178078)	promoter-TSS (NM_178078)	-655.0	NM_001205226	234594.0	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	171.62	187.08	140.59	124.82	160.95	167.99	152.09	187.92	141.14
Merged-chr13-9094352-3	chr13	9093857	9094857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	(CGGGG)n|Simple_repeat|Simple_repeat	476.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	476.52	342.36	383.86	481.75	376.94	307.85	408.74	333.39	234.82
Merged-chr19-3360062-3	chr19	3359567	3360567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 5 of 18)	intron (NM_013495, intron 5 of 18)	-28790.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	172.76	218.41	110.99	118.08	131.09	160.76	188.0	232.58	118.04
Merged-chr8-66861129-3	chr8	66860639	66861639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	CpG	922.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	105.83	62.67	65.67	66.8	50.85	19.29	69.71	38.91	19.36
Merged-chr10-26797498-3	chr10	26796993	26797993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	24981.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	182.49	163.58	125.79	194.99	137.15	145.49	123.57	142.82	78.07
Merged-chr17-15564381-3	chr17	15563878	15564878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1055.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	102.4	99.53	88.8	109.3	102.63	92.44	175.33	134.86	79.32
Merged-chr18-66473203-3	chr18	66472687	66473687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14583.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	38.33	25.8	24.97	66.12	28.92	58.68	51.75	48.64	45.59
Merged-chr11-120041015-1	chr11	120040515	120041515	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	766.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	233.4	256.66	148.92	343.43	379.27	282.13	256.65	334.28	105.55
Merged-chr9-110527876-3	chr9	110527377	110528377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4720.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	69.22	68.2	34.22	62.75	43.39	61.09	50.7	49.52	43.09
Merged-chr16-21694170-3	chr16	21693707	21694707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	CpG	458.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	304.9	301.35	246.96	342.08	350.35	295.79	355.93	337.82	218.58
Merged-chr4-126202835-3	chr4	126202339	126203339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146153)	promoter-TSS (NM_146153)	-129.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	380.99	335.45	250.66	350.18	286.9	273.29	315.8	322.78	191.73
Merged-chr1-53784484-2	chr1	53783997	53784997	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	718.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	267.72	327.16	166.49	277.31	256.58	192.11	276.72	297.14	179.24
Merged-chr3-83080936-3	chr3	83080441	83081441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	25403.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	3.43	5.07	3.7	6.75	3.73	1.61	6.34	1.33	3.12
Merged-chr10-60260764-3	chr10	60260262	60261262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16866.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	227.11	197.68	117.47	245.6	185.2	199.34	288.34	300.23	138.65
Merged-chr16-55799015-3	chr16	55798508	55799508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23130.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	78.94	76.49	44.4	110.65	74.64	69.13	71.82	91.97	46.22
Merged-chr12-91735804-3	chr12	91735291	91736291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50645.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	156.74	157.59	142.44	201.07	175.41	209.79	157.37	198.09	107.42
Merged-chr18-65600086-3	chr18	65599585	65600585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	-6598.0	NM_001361052	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	11.44	11.06	11.1	18.22	13.53	7.23	10.56	4.86	1.87
Merged-chr3-30864854-3	chr3	30864363	30865363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	8913.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	78.37	92.16	76.77	93.79	96.57	118.96	104.56	107.89	48.71
Merged-chr10-80930594-3	chr10	80930084	80931084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008655, intron 2 of 3)	CpG-1325	493.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	147.59	110.13	90.65	121.45	83.04	98.87	154.2	136.63	91.81
Merged-chr8-121585576-3	chr8	121585071	121586071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4897.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	76.08	94.0	79.55	81.64	77.91	89.22	86.61	96.39	88.68
Merged-chr8-79711739-3	chr8	79711229	79712229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	11.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	239.69	302.74	201.64	229.4	257.51	210.59	229.19	222.41	141.14
Merged-chr7-49396319-3	chr7	49395811	49396811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	150122.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	40.62	21.2	5.55	61.4	34.06	38.58	13.73	13.27	8.12
Merged-chr4-122853809-3	chr4	122853291	122854291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 6 of 8)	intron (NM_008917, intron 6 of 8)	17564.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	82.38	91.7	53.65	115.38	91.9	69.93	86.61	84.9	74.94
Merged-chr19-12433266-3	chr19	12432769	12433769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5364.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	59.49	68.2	26.82	52.63	36.39	47.42	38.02	35.82	34.97
Merged-chr16-91547020-3	chr16	91546517	91547517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-77.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	463.94	357.57	229.39	423.05	246.78	281.33	409.8	381.59	219.21
Merged-chr8-88138297-3	chr8	88137791	88138791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	85.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	260.86	266.79	201.64	251.67	377.87	213.0	213.35	235.68	121.78
Merged-chr5-124862611-3	chr5	124862124	124863124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	-81.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.72	6.45	3.7	6.75	2.8	6.43	5.28	1.33	1.25
Merged-chr17-43568517-3	chr17	43568039	43569039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	88.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	199.07	193.99	172.97	216.58	217.39	242.74	111.96	88.43	123.66
Merged-chr13-102689879-3	chr13	102689390	102690390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3657.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	358.68	308.26	144.29	282.03	221.59	196.93	318.97	358.6	158.01
Merged-chr9-50617201-5	chr9	50616687	50617687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028300)	promoter-TSS (NM_028300)	-134.0	NM_028300	72614.0	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	147.59	119.34	136.89	124.82	103.56	124.59	151.03	84.01	84.31
Merged-chr3-138519434-3	chr3	138518937	138519937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6754.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	25.74	12.9	21.27	24.96	16.79	28.94	35.91	29.63	21.23
Merged-chrX-53643761-3	chrX	53643277	53644277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024170)	promoter-TSS (NM_024170)	-14.0	NM_024170	66158.0	Mm.391252	NM_024170	ENSMUSG00000067925	Rtl8a	1110012O05Rik|Cxx1a|Mar8.2A/B|Mart8b	retrotransposon Gag like 8A	protein-coding	7.44	7.83	3.7	10.12	13.06	8.04	10.56	17.24	1.25
Merged-chr1-154175555-3	chr1	154175059	154176059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-25628.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	14.87	11.06	3.7	18.89	11.66	10.45	14.79	7.96	2.5
Merged-chr12-100878804-2	chr12	100878312	100879312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177673, exon 3 of 3)	exon (NM_001177673, exon 3 of 3)	20712.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	5.72	5.53	1.85	4.72	1.4	1.61	5.28	4.42	1.25
Merged-chr16-93750690-3	chr16	93750218	93751218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357118, intron 6 of 35)	intron (NM_001357118, intron 6 of 35)	20619.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	63.5	32.72	26.82	94.46	44.32	27.33	62.31	45.54	12.49
Merged-chr3-51326936-3	chr3	51326415	51327415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	MTC|LTR|ERVL-MaLR	13729.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	118.99	111.51	108.22	132.24	109.16	121.37	142.59	155.2	88.68
Merged-chr10-127621132-3	chr10	127620677	127621677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008512)	promoter-TSS (NM_008512)	-29.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	199.65	127.18	182.22	185.55	123.62	196.93	215.46	190.13	133.65
Merged-chr12-85985760-3	chr12	85985253	85986253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	93288.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	63.5	67.27	69.37	68.82	71.38	100.47	109.84	107.45	84.94
Merged-chr2-79132377-3	chr2	79131871	79132871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123055.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	229.97	216.57	130.42	221.98	150.68	157.54	172.16	185.71	131.15
Merged-chr2-120353086-3	chr2	120352576	120353576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027618)	promoter-TSS (NR_027618)	57.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	82.95	55.29	84.17	88.39	79.31	83.59	74.99	80.03	42.47
Merged-chr2-84715692-2	chr2	84715207	84716207	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-543.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	152.17	157.13	147.07	138.99	113.36	151.11	198.56	221.53	111.17
Merged-chr9-111604206-1	chr9	111603706	111604706	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 4 of 10)	intron (NM_016853, intron 4 of 10)	86142.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	5.72	2.3	1.85	2.02	2.8	4.82	25.35	23.43	21.23
Merged-chr3-148322131-3	chr3	148321635	148322635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	632500.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	13.16	14.75	11.1	10.12	7.46	24.11	10.56	10.17	13.74
Merged-chr1-167246469-3	chr1	167245982	167246982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	L1M4|LINE|L1	38645.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	13.16	11.06	7.4	15.52	7.0	18.49	6.34	3.98	6.87
Merged-chr10-128194364-3	chr10	128193863	128194863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285779)	promoter-TSS (NM_001285779)	-272.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	10.3	8.75	5.55	10.12	11.2	9.65	15.84	5.75	10.62
Merged-chr11-74839133-3	chr11	74838627	74839627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	8203.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	569.77	475.99	219.21	521.56	431.52	267.66	424.59	525.74	188.61
Merged-chr18-4375666-3	chr18	4375189	4376189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361009)	promoter-TSS (NM_001361009)	97.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	156.17	209.2	135.04	183.52	205.73	163.17	223.91	234.79	134.27
Merged-chr2-180967186-3	chr2	180966705	180967705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177708)	promoter-TSS (NM_001177708)	-20.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	336.37	446.5	283.04	316.44	329.35	269.27	345.37	385.57	250.44
Merged-chr2-94406517-4	chr2	94406014	94407014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	175.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	259.71	233.16	205.34	256.39	255.18	240.33	305.24	266.18	155.51
Merged-chr7-31127060-3	chr7	31126531	31127531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-8.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	100.68	63.13	105.44	78.27	56.91	70.73	99.28	42.01	37.47
Merged-chr2-103761282-3	chr2	103760781	103761781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153126)	promoter-TSS (NM_153126)	-11.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	169.33	193.99	118.39	186.22	194.53	137.45	159.48	189.25	113.66
Merged-chr4-6355513-3	chr4	6355027	6356027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10153.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	106.97	95.38	72.15	143.71	132.95	90.83	100.34	135.3	42.47
Merged-chr18-75502802-3	chr18	75502298	75503298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11847.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	106.97	138.7	128.57	86.36	89.57	109.32	89.78	98.6	92.43
Merged-chr5-142401459-3	chr5	142400967	142401967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199068)	promoter-TSS (NM_199068)	-30.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	94.96	68.66	58.27	112.0	62.05	89.22	163.71	87.11	41.22
Merged-chr11-51756550-3	chr11	51756064	51757064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175255, exon 1 of 23)	5' UTR (NM_175255, exon 1 of 23)	270.0	NM_001290785	77371.0	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	430.18	379.69	204.41	445.99	345.22	254.8	350.65	365.67	153.01
Merged-chr2-163719422-3	chr2	163718921	163719921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	25384.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	10.87	8.75	7.4	14.17	7.46	9.65	6.34	7.52	13.74
Merged-chrX-139610656-3	chrX	139610181	139611181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023270)	promoter-TSS (NM_023270)	61.0	NM_023270	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	64.64	57.14	42.55	48.58	40.12	50.64	83.44	59.25	34.35
Merged-chr18-58555689-3	chr18	58555188	58556188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081072)	promoter-TSS (NM_001081072)	-552.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	22.31	29.49	13.87	39.13	33.12	45.01	11.62	17.69	13.12
Merged-chr6-119848252-3	chr6	119847743	119848743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053204)	promoter-TSS (NM_053204)	50.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	142.44	128.56	105.44	139.67	97.5	127.8	113.01	67.65	68.07
Merged-chr5-3461652-3	chr5	3461145	3462145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82188.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	82.95	88.01	49.95	83.66	93.77	53.05	42.25	44.66	28.73
Merged-chr8-111937324-3	chr8	111936831	111937831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-3372.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	15.45	23.04	23.12	20.92	17.26	16.08	26.4	22.55	19.98
Merged-chr1-118459611-3	chr1	118459111	118460111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027901)	promoter-TSS (NR_027901)	-346.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	115.55	105.98	55.5	116.05	138.09	61.89	133.08	103.47	48.71
Merged-chr5-90894432-3	chr5	90893947	90894947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3202.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	41.19	27.19	22.2	52.63	41.99	55.46	26.4	22.55	11.24
Merged-chr3-5576310-3	chr3	5575807	5576807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163301)	promoter-TSS (NM_001163301)	-59.0	NM_008994	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	303.19	313.79	230.31	311.04	284.57	258.02	333.75	275.91	217.96
Merged-chr9-83546511-3	chr9	83546006	83547006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	96.11	78.33	47.17	149.11	87.7	85.2	92.94	74.73	36.85
Merged-chr12-100089449-3	chr12	100088923	100089923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22908.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	131.0	129.94	79.55	132.92	125.49	110.92	158.43	173.77	83.69
Merged-chr10-63386594-3	chr10	63386103	63387103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013888)	promoter-TSS (NM_013888)	40.0	NM_013888	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	73.79	69.58	63.82	85.69	63.91	74.75	85.55	71.19	51.84
Merged-chrX-101254147-3	chrX	101253641	101254641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018789)	promoter-TSS (NM_018789)	-387.0	NM_018789	54601.0	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	29.17	20.74	21.27	30.36	15.86	33.76	25.35	17.24	19.36
Merged-chr5-149089120-3	chr5	149088622	149089622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36065.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	4.58	6.45	1.85	8.77	7.46	6.43	4.22	4.42	5.0
Merged-chr2-90679282-3	chr2	90678811	90679811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021512, exon 2 of 37)	5' UTR (NM_021512, exon 2 of 37)	2096.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	135.58	126.25	130.42	124.15	130.62	119.76	144.7	145.92	66.82
Merged-chr8-69717062-3	chr8	69716574	69717574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039965)	promoter-TSS (NM_001039965)	-172.0	NM_001039965	66869.0	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	361.54	416.09	303.38	297.55	377.87	301.42	279.89	369.21	227.33
Merged-chr6-59024526-3	chr6	59024009	59025009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153574)	promoter-TSS (NM_153574)	-7.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	42.9	54.83	26.82	49.25	62.05	69.13	63.37	74.28	33.1
Merged-chrX-160138409-3	chrX	160137906	160138906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008810)	promoter-TSS (NM_008810)	24.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	168.76	146.07	130.42	175.43	139.02	120.57	136.25	143.7	53.08
Merged-chr15-64311933-3	chr15	64311459	64312459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	714.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	96.68	110.13	111.92	118.75	108.7	107.71	119.35	152.11	84.94
Merged-chr10-10557485-3	chr10	10556980	10557980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	URR1B|DNA|hAT-Charlie	727.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	364.4	534.51	258.06	373.12	518.76	325.53	373.89	490.36	193.6
Merged-chr18-82855825-3	chr18	82855324	82856324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-73.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	274.01	397.2	187.77	238.18	267.31	210.59	239.75	447.47	182.99
Merged-chr9-66895522-3	chr9	66895024	66896024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	24181.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	152.17	186.62	106.37	135.62	136.69	109.32	123.57	198.09	80.56
Merged-chr13-113484340-3	chr13	113483827	113484827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	18517.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	50.34	41.93	20.35	51.28	16.79	36.97	45.42	33.16	15.61
Merged-chr2-167765359-3	chr2	167764858	167765858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74181.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	176.76	149.29	106.37	182.85	204.33	111.73	214.41	213.12	88.06
Merged-chr14-47178022-3	chr14	47177512	47178512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	11401.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	27.46	39.17	27.75	35.76	50.38	32.15	40.14	27.86	36.22
Merged-chr17-12170442-1	chr17	12169942	12170942	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	51158.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	6.86	4.61	3.7	14.17	7.46	17.68	13.73	11.05	13.74
Merged-chr8-56292507-3	chr8	56291941	56292941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2111.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	96.68	119.8	67.52	141.02	115.69	115.75	129.91	180.85	103.67
Merged-chr7-45238992-3	chr7	45238504	45239504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007645)	promoter-TSS (NM_007645)	111.0	NM_001290802	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	77.23	67.74	38.85	97.16	80.71	95.65	117.24	103.91	59.95
Merged-chr10-127590426-3	chr10	127589941	127590941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 12 of 88)	intron (NM_008512, intron 12 of 88)	30707.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	169.9	101.37	158.17	201.07	115.23	109.32	146.81	145.92	104.92
Merged-chr8-83748075-3	chr8	83747586	83748586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6775.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	315.2	262.65	234.94	300.92	198.27	220.24	316.86	374.07	187.36
Merged-chr10-13983021-3	chr10	13982514	13983514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16635.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	374.7	358.03	201.64	372.44	350.81	228.28	362.27	511.59	207.97
Merged-chr7-45522031-3	chr7	45521535	45522535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008654)	TTS (NM_008654)	4233.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	179.62	124.87	74.0	141.02	114.29	110.12	130.97	137.51	78.07
Merged-chr3-87617509-4	chr3	87616960	87617960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003912)	promoter-TSS (NM_001003912)	-99.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	105.83	89.39	128.57	97.16	78.37	135.04	120.41	69.86	45.59
Merged-chr17-17887953-3	chr17	17887446	17888446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	122.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	90.96	111.97	36.07	58.03	63.45	57.07	95.06	93.3	72.45
Merged-chr9-40801147-6	chr9	40800639	40801639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031165)	promoter-TSS (NM_031165)	-134.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	211.09	91.7	112.84	175.43	95.63	95.65	142.59	122.04	80.56
Merged-chr5-110808326-3	chr5	110807831	110808831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347394, intron 3 of 27)	intron (NM_001347394, intron 3 of 27)	1750.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	313.49	332.23	225.69	282.03	290.63	285.34	283.06	347.1	211.71
Merged-chr19-6364507-3	chr19	6363988	6364988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360393, intron 1 of 11)	CpG	798.0	NR_122118	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	602.37	463.55	482.83	499.97	437.12	369.74	392.9	393.97	247.94
Merged-chr7-13038187-3	chr7	13037652	13038652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	123.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	254.56	264.03	236.79	251.67	239.32	229.88	251.37	197.21	186.11
Merged-chr4-101265279-3	chr4	101264788	101265788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146145)	promoter-TSS (NM_146145)	-6.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	287.17	273.71	262.69	282.03	240.25	192.11	221.8	185.71	149.89
Merged-chr17-87284000-3	chr17	87283519	87284519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	1133.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	82.95	54.37	49.02	95.14	57.85	51.44	55.98	47.75	28.73
Merged-chr15-73632453-3	chr15	73631964	73632964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7720.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	41.76	46.08	76.77	61.4	45.25	77.97	65.48	68.54	38.1
Merged-chr11-68939807-3	chr11	68939298	68940298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-12717.0	NM_145746	252868.0	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	38.33	44.7	16.65	48.58	55.05	39.39	78.16	55.71	17.49
Merged-chr7-3665550-3	chr7	3665038	3666038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181820)	TTS (NM_181820)	302.0	NM_027203	69757.0	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	104.11	70.5	54.57	49.25	57.38	59.48	65.48	70.75	48.71
Merged-chr4-145276758-3	chr4	145276248	145277248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 11 of 12)	intron (NM_009401, intron 11 of 12)	-29878.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	34.9	41.93	29.6	28.34	33.12	68.32	32.74	20.78	29.35
Merged-chr11-54534051-3	chr11	54533548	54534548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 1 of 28)	RLTR14|LTR|ERV1	11203.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	26.89	17.97	4.62	31.71	16.33	21.7	27.46	21.22	10.62
Merged-chr9-32501057-3	chr9	32500552	32501552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	40400.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	92.67	97.69	57.35	105.26	109.16	73.14	89.78	57.48	48.71
Merged-chr6-89422177-3	chr6	89421686	89422686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-59573.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	96.11	89.85	49.95	76.92	47.12	49.83	63.37	57.92	26.85
Merged-chr16-24640466-3	chr16	24639971	24640971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-81384.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	18.88	9.68	17.57	29.01	19.13	12.86	20.07	8.84	21.86
Merged-chr5-35757810-3	chr5	35757286	35758286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-94.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	22.31	26.26	33.3	34.41	22.39	19.29	28.52	19.46	23.11
Merged-chr1-171247206-3	chr1	171246701	171247701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-79.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	135.0	108.75	93.42	143.71	107.3	141.47	109.84	122.92	85.56
Merged-chr5-99339874-3	chr5	99339356	99340356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-86929.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	257.42	233.16	148.92	272.59	244.92	176.83	274.61	323.22	126.15
Merged-chr17-23983594-3	chr17	23983081	23984081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8351.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	248.84	194.91	100.82	213.21	146.48	96.45	185.89	220.2	81.81
Merged-chr3-103914387-3	chr3	103913841	103914841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356556, exon 1 of 8)	5' UTR (NM_001356556, exon 1 of 8)	221.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	126.42	164.04	138.74	124.15	107.76	95.65	128.85	109.22	86.81
Merged-chr15-4026594-3	chr15	4026089	4027089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028266, exon 1 of 2)	non-coding (NR_028266, exon 1 of 2)	161.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	236.26	261.26	253.44	246.27	236.99	217.83	271.44	240.98	146.14
Merged-chr9-31211889-3	chr9	31211395	31212395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102456)	promoter-TSS (NM_001102456)	-47.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	48.62	30.87	27.75	60.05	49.92	56.27	47.53	34.49	43.72
Merged-chr5-124024979-2	chr5	124024481	124025481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	L2b|LINE|L2	7279.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	163.04	108.75	84.17	152.49	109.16	123.78	122.52	109.66	77.44
Merged-chr6-71543887-3	chr6	71543372	71544372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025783)	promoter-TSS (NM_025783)	20.0	NM_025783	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	267.15	244.68	185.92	259.09	312.09	222.65	279.89	336.49	159.88
Merged-chr15-38078948-3	chr15	38078454	38079454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081359)	promoter-TSS (NM_001081359)	-100.0	NM_001081359	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	116.7	90.77	109.14	112.0	83.51	84.4	126.74	59.69	53.08
Merged-chr11-4594879-3	chr11	4594378	4595378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028860)	promoter-TSS (NM_028860)	-63.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	316.35	336.37	181.29	275.28	329.82	184.07	365.44	346.66	168.0
Merged-chr5-99983880-3	chr5	99983368	99984368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4930.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	59.49	80.64	78.62	53.3	48.05	74.75	59.15	49.52	36.22
Merged-chr15-78581598-3	chr15	78581091	78582091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-2.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	81.23	76.03	86.95	81.64	69.98	113.33	148.92	106.12	78.69
Merged-chr19-53903252-3	chr19	53902746	53903746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168492)	promoter-TSS (NM_001168492)	-105.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	210.52	186.62	156.32	182.17	147.42	176.83	207.01	178.64	129.9
Merged-chr2-6731020-3	chr2	6730520	6731520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-9358.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	12.01	5.07	12.95	20.92	8.86	8.04	8.45	8.84	8.74
Merged-chr15-80255569-2	chr15	80255057	80256057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	373.0	NM_009716	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	576.06	464.47	391.26	567.44	495.9	436.46	485.85	542.98	291.65
Merged-chr2-150673997-3	chr2	150673485	150674485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5745.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	173.9	98.15	96.2	168.0	98.9	84.4	124.63	125.13	39.35
Merged-chr7-123330735-3	chr7	123330231	123331231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 2 of 19)	intron (NM_001316713, intron 2 of 19)	39184.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	86.38	74.19	43.47	62.07	41.52	51.44	52.81	60.58	56.21
Merged-chr14-47515231-3	chr14	47514754	47515754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	42693.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	77.8	104.6	90.65	61.4	64.38	64.3	103.51	123.81	96.8
Merged-chr9-45961964-3	chr9	45961449	45962449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	70.93	70.5	62.9	60.72	53.65	69.93	44.36	49.08	48.09
Merged-chr6-89257074-3	chr6	89256571	89257571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28654.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	174.48	202.75	112.84	193.64	195.0	155.93	163.71	188.36	139.27
Merged-chr7-56050114-3	chr7	56049614	56050614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010418)	promoter-TSS (NM_010418)	-41.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	102.97	92.16	94.35	72.19	95.63	102.08	104.56	103.91	79.94
Merged-chr10-24634448-3	chr10	24633951	24634951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39009.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	286.6	212.42	178.52	290.8	254.25	213.0	240.81	303.77	109.29
Merged-chr7-136321911-1	chr7	136321411	136322411	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27504.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	14.3	18.89	6.47	19.57	12.13	32.96	29.57	26.97	14.99
Merged-chr13-83074426-3	chr13	83073918	83074918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-376085.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	57.21	61.75	37.0	58.7	54.11	51.44	63.37	81.8	42.47
Merged-chr8-13661042-1	chr8	13660542	13661542	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	16545.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	67.5	58.52	65.67	131.57	104.03	102.08	102.45	84.45	55.58
Merged-chr14-60784569-3	chr14	60784082	60785082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040642)	promoter-TSS (NR_040642)	16.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	5.15	11.52	5.55	22.27	8.86	18.49	12.67	4.86	6.87
Merged-chr8-73353634-3	chr8	73353136	73354136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-96.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	79.52	80.64	87.87	72.19	81.17	78.77	84.49	67.21	60.58
Merged-chr19-8723310-3	chr19	8722806	8723806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002896)	promoter-TSS (NR_002896)	63.0	NM_001161413	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	346.09	431.29	196.09	253.69	336.82	200.95	233.42	320.57	193.6
Merged-chr12-84195339-3	chr12	84194849	84195849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-1334.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	78.94	41.47	22.2	53.98	28.46	18.49	42.25	44.22	17.49
Merged-chr8-11464343-3	chr8	11463843	11464843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-13586.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	292.32	235.0	147.99	283.38	263.11	170.4	267.21	297.14	114.29
Merged-chr14-57424101-3	chr14	57423605	57424605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009376)	promoter-TSS (NM_009376)	34.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	110.41	155.75	61.97	164.63	185.67	122.98	143.64	147.24	76.82
Merged-chr10-14117186-3	chr10	14116685	14117685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 4 of 12)	intron (NM_001358783, intron 4 of 12)	150806.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	37.76	22.12	25.9	44.53	23.33	25.72	33.8	19.9	9.99
Merged-chr9-75409406-3	chr9	75408907	75409907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-48.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	391.86	379.23	233.09	401.46	378.8	275.7	459.44	443.05	212.34
Merged-chr10-117866920-3	chr10	117866448	117867448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20974.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	207.08	186.62	100.82	230.08	139.49	110.12	196.45	214.01	94.93
Merged-chr12-79633625-3	chr12	79633107	79634107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	291126.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	121.85	85.71	72.15	115.38	59.25	76.36	74.99	80.92	51.21
Merged-chr2-129297287-3	chr2	129296766	129297766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	-54.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	126.42	133.17	98.05	89.06	74.64	100.47	132.02	160.95	112.42
Merged-chr9-21073527-3	chr9	21073028	21074028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039824)	promoter-TSS (NM_001039824)	-14.0	NM_001039824	68165.0	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	161.89	135.47	86.02	127.52	134.82	139.06	122.52	149.89	95.55
Merged-chrX-151520537-3	chrX	151520022	151521022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177201)	promoter-TSS (NM_177201)	-150.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	271.15	330.84	170.19	271.24	269.64	197.73	207.01	259.99	123.03
Merged-chr6-84752963-3	chr6	84752450	84753450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-159042.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	81.8	98.61	78.62	80.29	76.04	86.01	80.27	72.07	61.83
Merged-chr19-12801253-3	chr19	12800743	12801743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	2664.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	126.42	127.18	96.2	111.33	101.7	100.47	166.88	142.82	68.7
Merged-chr18-76241415-3	chr18	76240894	76241894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010754)	promoter-TSS (NM_010754)	-307.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	200.22	150.22	178.52	191.62	138.09	151.92	259.82	151.22	100.55
Merged-chr11-58302446-6	chr11	58302004	58303004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	-4565.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	82.95	105.52	86.02	56.0	79.31	48.23	120.41	111.87	82.44
Merged-chr19-7557447-3	chr19	7556970	7557970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139269)	promoter-TSS (NM_139269)	11.0	NM_139269	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	44.62	52.53	46.25	53.3	33.12	37.78	51.75	58.81	33.1
Merged-chr1-161500955-3	chr1	161500449	161501449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	6292.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	136.15	151.6	120.24	156.53	115.69	114.14	152.09	152.55	70.57
Merged-chr12-85486140-3	chr12	85485650	85486650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12260.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	177.91	123.03	86.02	170.7	118.96	74.75	135.19	128.67	91.81
Merged-chr14-20640962-3	chr14	20640472	20641472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15568.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	269.44	226.25	240.49	262.47	197.33	179.24	193.28	214.45	135.52
Merged-chr11-70540121-3	chr11	70539637	70540637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008876)	promoter-TSS (NM_008876)	73.0	NM_001361935	18806.0	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	97.82	86.63	90.65	89.74	69.04	73.14	79.21	77.38	30.6
Merged-chr2-30270348-3	chr2	30269851	30270851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252571, intron 2 of 9)	intron (NM_001252571, intron 2 of 9)	3532.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	26.89	37.32	20.35	29.01	29.86	30.54	22.18	24.76	14.99
Merged-chr2-3424669-3	chr2	3424163	3425163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	532.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	330.65	302.27	176.67	326.56	289.7	232.29	351.71	366.56	151.76
Merged-chr10-22376625-3	chr10	22376121	22377121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR43C|LTR|ERVK	14727.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	20.59	8.29	1.85	8.77	3.73	6.43	12.67	6.63	3.75
Merged-chr1-152528961-3	chr1	152528484	152529484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	L1MEd|LINE|L1	96233.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	196.79	154.82	104.52	153.16	123.62	115.75	141.53	146.36	81.19
Merged-chr11-90225438-3	chr11	90224947	90225947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24029.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	98.97	102.75	77.7	97.16	99.83	104.49	57.03	87.11	69.32
Merged-chr12-111437335-2	chr12	111436844	111437844	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5317.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	387.28	352.5	201.64	441.27	297.63	228.28	315.8	363.02	159.25
Merged-chr2-58978279-3	chr2	58977758	58978758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	182425.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	8.01	13.82	12.95	19.57	16.79	18.49	12.67	11.05	13.12
Merged-chr2-32757183-3	chr2	32756712	32757712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045485)	promoter-TSS (NR_045485)	-22.0	NR_045485	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	57.21	49.3	40.7	61.4	38.72	45.82	51.75	33.6	19.98
Merged-chr2-148889150-3	chr2	148888656	148889656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13644.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.58	7.37	5.55	4.72	4.2	7.23	7.39	6.19	5.0
Merged-chr9-57261610-3	chr9	57261094	57262094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028820, intron 1 of 2)	CpG	1005.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	63.5	52.99	37.92	85.01	73.24	72.34	100.34	62.79	30.6
Merged-chr17-23726893-1	chr17	23726393	23727393	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023058, intron 1 of 7)	intron (NM_023058, intron 1 of 7)	557.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	12.59	11.98	12.95	14.84	7.0	10.45	55.98	38.03	19.98
Merged-chr16-35869803-1	chr16	35869303	35870303	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1579.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	300.33	341.9	181.29	277.31	264.98	195.32	309.46	425.36	153.63
Merged-chr10-63430071-3	chr10	63429578	63430578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177612)	promoter-TSS (NM_177612)	-20.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	72.08	61.28	49.95	55.33	65.78	63.5	55.98	65.44	41.22
Merged-chr2-77284596-3	chr2	77284085	77285085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3993.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	45.76	46.08	21.27	59.38	43.39	56.27	62.31	47.75	44.34
Merged-chr8-70699636-1	chr8	70699136	70700136	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010592, exon 1 of 1)	exon (NM_010592, exon 1 of 1)	1897.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	383.28	309.19	329.28	417.65	307.43	341.61	351.71	328.97	241.69
Merged-chr7-142458130-3	chr7	142457615	142458615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2697.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	26.31	12.9	18.5	5.4	2.33	6.43	23.24	13.71	16.86
Merged-chr3-94995012-3	chr3	94994507	94995507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293715, intron 5 of 11)	L2c|LINE|L2	-9161.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	17.73	11.06	10.17	17.54	11.2	12.06	19.01	15.92	6.25
Merged-chr6-125042196-3	chr6	125041690	125042690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	2342.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	144.16	127.18	80.47	95.81	81.17	77.16	121.46	124.25	88.06
Merged-chr2-140784822-3	chr2	140784328	140785328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	Lx5|LINE|L1	-113352.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	17.16	14.75	8.32	12.82	7.46	19.29	13.73	4.86	11.24
Merged-chr18-81571741-3	chr18	81571246	81572246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	420334.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	12.59	10.6	12.95	10.8	14.46	14.47	32.74	38.03	18.11
Merged-chr4-136125722-3	chr4	136125231	136126231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18091.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	66.36	46.08	25.9	68.82	50.38	64.3	106.67	118.94	52.46
Merged-chr9-15045443-3	chr9	15044945	15045945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019482)	promoter-TSS (NM_019482)	33.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	77.23	51.15	37.92	81.64	67.18	55.46	46.47	41.56	37.47
Merged-chr12-110778043-3	chr12	110777538	110778538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	intron (NM_001347428, intron 1 of 2)	40106.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	46.91	35.94	37.92	54.65	42.92	29.74	50.7	45.99	22.48
Merged-chr15-13393465-3	chr15	13392978	13393978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219803.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	50.34	62.21	58.27	73.54	63.45	61.89	63.37	80.47	48.71
Merged-chr9-25252504-3	chr9	25252001	25253001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	62.0	NM_001205367	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	299.18	274.17	253.44	296.88	264.51	201.75	289.39	234.79	150.51
Merged-chr16-20098150-3	chr16	20097662	20098662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029436, intron 1 of 7)	CpG	608.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	289.46	363.1	318.18	332.64	400.26	282.93	315.8	345.33	179.86
Merged-chr2-103483550-3	chr2	103483045	103484045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009804, intron 1 of 12)	intron (NM_009804, intron 1 of 12)	1608.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	32.61	32.72	17.57	29.69	20.99	20.09	32.74	23.43	22.48
Merged-chr11-98438953-3	chr11	98438447	98439447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025559)	promoter-TSS (NM_025559)	41.0	NM_025559	103742.0	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	81.23	90.77	94.35	80.29	105.9	71.54	114.07	84.01	52.46
Merged-chr12-54862924-3	chr12	54862397	54863397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007688)	promoter-TSS (NM_007688)	-20.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	193.35	164.96	149.84	180.82	139.95	138.25	233.42	164.93	89.31
Merged-chr15-38477100-3	chr15	38476603	38477603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	13444.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	32.04	30.41	18.5	45.88	23.33	28.94	26.4	28.3	22.48
Merged-chr1-151344882-1	chr1	151344382	151345382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039511, intron 1 of 7)	CpG	384.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	190.49	153.44	175.74	182.85	164.68	174.42	181.66	178.19	134.27
Merged-chr9-21169028-3	chr9	21168525	21169525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	3311.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	157.89	119.34	108.22	138.99	94.7	123.78	115.12	141.05	84.94
Merged-chr4-9771428-3	chr4	9770911	9771911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	826.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	80.09	105.98	49.02	16.87	11.2	8.84	46.47	62.79	29.35
Merged-chr13-74260195-5	chr13	74259686	74260686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 2 of 9)	CpG	32145.0	NM_009644	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	307.76	361.72	306.16	325.89	336.82	299.81	343.26	351.52	238.57
Merged-chr7-27731418-3	chr7	27730917	27731917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029531)	promoter-TSS (NM_029531)	8.0	NM_009560	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	45.76	60.36	60.12	43.86	37.32	71.54	61.26	44.22	59.95
Merged-chr1-152805066-3	chr1	152804573	152805573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	4920.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	81.23	61.75	59.2	67.47	54.58	61.09	74.99	58.37	44.34
Merged-chr7-110840532-3	chr7	110840017	110841017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025999, intron 1 of 5)	L3|LINE|CR1	3864.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	92.67	95.84	58.27	97.83	62.51	82.79	95.06	126.02	48.71
Merged-chr2-60383401-3	chr2	60382887	60383887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-156.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	8.01	2.76	9.25	4.72	5.6	2.41	5.28	3.54	1.87
Merged-chr2-160210694-3	chr2	160210179	160211179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116815.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	158.46	163.12	102.67	215.91	181.47	190.5	210.18	205.17	85.56
Merged-chr18-23882316-2	chr18	23881816	23882816	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 6 of 7)	intron (NM_001162941, intron 6 of 7)	-72372.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	26.31	36.86	36.07	157.88	124.09	144.68	125.69	165.37	103.67
Merged-chr14-75754602-3	chr14	75754105	75755105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177381)	promoter-TSS (NM_177381)	-112.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	141.3	102.75	104.52	128.87	103.1	114.14	151.03	110.1	82.44
Merged-chr2-49743788-3	chr2	49743291	49744291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 19 of 25)	MTD|LTR|ERVL-MaLR	-43895.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	249.42	241.45	144.29	180.82	184.74	135.04	188.0	263.09	113.66
Merged-chr4-63207107-1	chr4	63206607	63207607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-8305.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	17.16	12.9	21.27	12.82	5.6	19.29	20.07	12.38	16.86
Merged-chr5-148452970-3	chr5	148452468	148453468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53064.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	42.33	42.85	45.32	30.36	22.39	34.56	52.81	38.03	38.1
Merged-chrX-98937245-3	chrX	98936764	98937764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207633)	promoter-TSS (NM_207633)	-517.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	113.84	148.83	90.65	107.95	119.43	122.18	133.08	144.59	49.34
Merged-chr10-111160375-3	chr10	111159875	111160875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4427.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	195.64	144.23	114.69	151.14	103.56	118.96	60.2	53.5	33.72
Merged-chr2-129593382-3	chr2	129592895	129593895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291021, exon 1 of 6)	5' UTR (NM_001291021, exon 1 of 6)	226.0	NM_001291022	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	372.41	365.4	348.71	407.53	371.81	389.03	403.46	355.94	288.53
Merged-chr4-45410370-3	chr4	45409799	45410799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1533.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	68.07	37.32	47.17	53.98	36.85	40.19	61.26	49.96	53.08
Merged-chr2-163765139-2	chr2	163764650	163765650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14911.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	155.03	145.61	50.87	170.03	159.08	147.09	9.51	7.52	2.5
Merged-chr8-123518822-3	chr8	123518320	123519320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018855)	promoter-TSS (NM_018855)	-15.0	NM_018855	104346.0	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	4.0	6.91	1.85	4.72	4.67	3.22	3.17	0.88	1.25
Merged-chr11-114968955-3	chr11	114968466	114969466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8549.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	131.0	116.12	93.42	66.8	39.19	47.42	85.55	107.0	81.81
Merged-chr2-90940381-3	chr2	90939881	90940881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-16.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	116.7	100.45	99.89	139.67	129.22	114.94	129.91	99.49	76.19
Merged-chr9-18468262-3	chr9	18467753	18468753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028160, intron 4 of 7)	intron (NM_028160, intron 4 of 7)	5306.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	9.72	9.68	18.5	18.22	11.66	23.31	11.62	12.82	14.99
Merged-chr2-157077721-3	chr2	157077222	157078222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	1543.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	193.35	98.61	116.54	141.69	82.11	122.98	116.18	106.56	59.33
Merged-chr9-21131355-3	chr9	21130849	21131849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018793)	promoter-TSS (NM_018793)	-74.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	62.35	57.6	75.85	59.38	43.85	64.3	98.23	99.93	61.2
Merged-chr16-33347334-3	chr16	33346821	33347821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33415.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	103.54	117.96	67.52	94.46	78.37	69.13	116.18	169.79	86.81
Merged-chr9-13299380-3	chr9	13298872	13299872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52416.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	120.13	102.29	119.32	105.26	87.24	122.18	91.89	80.03	64.95
Merged-chr17-73949784-3	chr17	73949264	73950264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	432.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	231.11	224.86	160.02	232.78	209.46	155.93	277.78	320.57	150.51
Merged-chr6-43655054-3	chr6	43654558	43655558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	11220.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	13.16	16.13	9.25	10.8	8.86	9.65	14.79	11.94	6.25
Merged-chr19-55866038-3	chr19	55865533	55866533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-29288.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	54.35	50.23	47.17	64.1	41.99	41.8	31.69	43.77	28.1
Merged-chr3-135826513-2	chr3	135826025	135827025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001135150, exon 2 of 9)	exon (NM_001135150, exon 2 of 9)	735.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	24.6	28.57	13.87	31.04	27.99	55.46	28.52	19.46	34.35
Merged-chr10-93261312-3	chr10	93260816	93261816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	49843.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	33.18	25.34	17.57	69.5	32.19	49.83	39.08	30.07	26.85
Merged-chr11-99179097-3	chr11	99178595	99179595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-24018.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	72.65	47.0	33.3	66.8	38.25	28.94	47.53	40.68	26.85
Merged-chr1-183669861-3	chr1	183669376	183670376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79101.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	37.18	29.03	35.15	40.48	23.33	36.17	51.75	55.27	26.85
Merged-chr17-29363276-3	chr17	29362788	29363788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	2374.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	39.47	36.86	49.95	37.11	27.99	57.87	32.74	40.24	17.49
Merged-chr8-70631615-3	chr8	70631123	70632123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330687, exon 2 of 3)	5' UTR (NM_001330687, exon 2 of 3)	472.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	133.86	79.25	41.62	66.8	33.59	26.53	61.26	59.69	28.73
Merged-chr11-98027054-3	chr11	98026565	98027565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009078, intron 1 of 5)	CpG	141.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	376.98	440.51	299.68	358.95	445.05	348.04	329.53	366.11	237.32
Merged-chr14-20546212-3	chr14	20545709	20546709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-84.0	NR_033571	75602.0	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	267.15	178.32	209.96	213.89	139.95	221.04	256.65	127.79	134.9
Merged-chr4-95775716-1	chr4	95775216	95776216	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	intron (NM_029347, intron 8 of 10)	191319.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.0	5.53	7.4	6.75	2.8	7.23	10.56	7.07	1.25
Merged-chr16-84972127-3	chr16	84971631	84972631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045889)	promoter-TSS (NR_045889)	-80.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	39.47	31.79	24.97	26.99	20.53	26.53	32.74	27.86	19.98
Merged-chr16-20516962-3	chr16	20516469	20517469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347176)	promoter-TSS (NM_001347176)	-17.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	61.78	43.77	49.95	66.12	40.59	53.05	67.6	51.73	37.47
Merged-chr11-118135436-3	chr11	118134929	118135929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6210.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	12.01	8.29	3.7	17.54	13.53	10.45	8.45	5.75	2.5
Merged-chr13-47251300-3	chr13	47250808	47251808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	57305.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	20.59	23.04	11.1	31.71	15.86	30.54	9.51	16.36	13.12
Merged-chr3-116808744-3	chr3	116808249	116809249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081326)	promoter-TSS (NM_001081326)	-583.0	NM_001081326	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	66.93	95.38	107.29	91.09	88.64	121.37	126.74	118.06	78.69
Merged-chr1-64308701-3	chr1	64308196	64309196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-187307.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	85.81	74.65	64.75	117.4	93.77	74.75	72.88	85.34	64.95
Merged-chr17-7939851-3	chr17	7939346	7940346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_025789	66832.0	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	12.59	7.83	7.4	14.84	5.6	4.82	9.51	12.38	0.62
Merged-chr7-45801584-3	chr7	45801083	45802083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005511, intron 15 of 15)	intron (NM_001005511, intron 15 of 15)	12733.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	7.44	5.53	7.4	12.82	8.4	3.22	6.34	5.75	14.36
Merged-chr2-167864429-3	chr2	167863921	167864921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67906.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	25.17	24.42	18.5	29.01	12.13	24.92	20.07	7.52	20.61
Merged-chr9-55296524-3	chr9	55296007	55297007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-12882.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	25.17	18.89	9.25	46.56	42.92	32.15	26.4	13.27	15.61
Merged-chr16-20693242-3	chr16	20692705	20693705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1852.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	117.84	80.64	70.3	82.32	50.85	61.89	77.1	64.56	49.96
Merged-chr11-23067866-3	chr11	23067354	23068354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	54467.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	28.03	19.35	20.35	15.52	13.06	21.7	15.84	13.27	16.24
Merged-chr4-88706064-3	chr4	88705578	88706578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14810.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	72.08	104.14	47.17	59.38	61.11	53.85	47.53	75.17	53.08
Merged-chr16-55756917-1	chr16	55756417	55757417	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65221.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	141.3	166.8	113.77	124.82	156.28	83.59	144.7	169.79	79.32
Merged-chr11-70468087-3	chr11	70467589	70468589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8105.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	207.66	162.66	98.97	190.95	115.69	167.99	174.27	189.69	106.79
Merged-chr8-90828806-3	chr8	90828302	90829302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-33.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	55.49	56.68	53.65	65.45	55.51	74.75	83.44	77.38	31.85
Merged-chr3-131698335-3	chr3	131697838	131698838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132306.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	34.32	30.87	19.42	29.01	16.79	24.92	30.63	40.68	18.11
Merged-chr10-75764361-3	chr10	75763867	75764867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-10.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	147.02	103.68	62.9	156.53	119.43	98.06	120.41	112.75	63.7
Merged-chr19-32595769-3	chr19	32595290	32596290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201470)	promoter-TSS (NM_001201470)	75.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	17.16	18.89	20.35	20.24	14.46	13.66	29.57	22.55	16.24
Merged-chr9-101076667-3	chr9	101076169	101077169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100451, intron 1 of 1)	intron (NM_001100451, intron 1 of 1)	1907.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	64.07	95.38	38.85	102.56	87.7	90.02	98.23	91.09	81.81
Merged-chr3-61441562-3	chr3	61441068	61442068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77061.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	32.61	20.27	48.1	28.34	21.93	34.56	13.73	16.8	21.23
Merged-chrX-140510403-3	chrX	140509917	140510917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	32251.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	53.2	67.27	19.42	49.25	41.99	51.44	33.8	45.99	38.1
Merged-chr11-3133693-2	chr11	3133301	3134301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 29 of 32)	intron (NM_030207, intron 29 of 32)	9780.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	54.92	47.0	106.37	76.24	74.17	144.68	1.06	0.88	107.42
Merged-chr18-67392351-3	chr18	67391853	67392853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026473, intron 2 of 3)	intron (NM_026473, intron 2 of 3)	1622.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	45.76	46.54	14.8	49.25	31.72	32.96	39.08	21.22	15.61
Merged-chr7-44997293-3	chr7	44996808	44997808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	271.0	NM_029410	75736.0	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	60.07	86.17	107.29	43.86	67.18	94.04	49.64	62.79	53.71
Merged-chrUn_JH584304-48025-1	chrUn_JH584304	47525	48525	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11664.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	45.42	16.8	0.0
Merged-chr4-45108089-3	chr4	45107588	45108588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134646)	promoter-TSS (NM_001134646)	25.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	21.17	23.04	19.42	35.09	30.79	42.6	26.4	24.32	8.12
Merged-chr4-86670034-3	chr4	86669537	86670537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007408)	promoter-TSS (NM_007408)	22.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	245.41	196.75	182.22	211.86	203.86	193.71	210.18	255.57	133.65
Merged-chr5-24034265-3	chr5	24033781	24034781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3591.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	74.37	74.19	86.95	80.29	55.51	73.95	91.89	70.75	48.71
Merged-chr3-97934050-3	chr3	97933538	97934538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	3865.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	101.83	96.76	37.0	142.37	104.96	112.53	107.73	118.5	56.83
Merged-chr13-54578327-3	chr13	54577827	54578827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019968, intron 2 of 3)	intron (NM_019968, intron 2 of 3)	3314.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	60.64	75.57	62.9	50.6	60.18	77.16	53.87	68.09	49.96
Merged-chr7-66310826-3	chr7	66310328	66311328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	MTC|LTR|ERVL-MaLR	70896.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	77.23	95.38	100.82	60.05	51.78	69.93	87.66	79.15	74.94
Merged-chr14-21814048-3	chr14	21813552	21814552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-17509.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	62.93	33.64	35.15	53.3	21.93	27.33	86.61	59.69	36.85
Merged-chr17-81551986-3	chr17	81551471	81552471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	186416.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	34.32	23.5	30.52	33.06	19.13	22.51	28.52	22.55	19.98
Merged-chr6-97482070-3	chr6	97481568	97482568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	MIRb|SINE|MIR	5752.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	196.79	133.63	100.82	176.1	113.83	117.35	204.9	169.79	88.68
Merged-chr11-32205326-3	chr11	32204785	32205785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030093)	promoter-TSS (NM_030093)	-130.0	NM_030093	78372.0	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	6.29	17.05	11.1	8.77	11.2	12.06	15.84	12.82	16.24
Merged-chr10-123061021-3	chr10	123060516	123061516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163024, intron 1 of 34)	RMER19B|LTR|ERVK	15489.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	57.21	65.89	48.1	60.05	57.38	37.78	31.69	43.77	44.97
Merged-chr4-132983174-3	chr4	132982655	132983655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	9060.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	92.1	70.04	37.92	85.01	38.72	42.6	71.82	67.65	67.45
Merged-chr5-121618978-3	chr5	121618480	121619480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178799)	promoter-TSS (NM_178799)	-42.0	NM_178799	338350.0	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	78.94	52.53	37.0	66.8	67.64	58.68	85.55	83.13	46.84
Merged-chr17-35262991-3	chr17	35262490	35263490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010380)	promoter-TSS (NM_010380)	-104.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	757.97	534.97	399.58	715.2	486.1	413.95	392.9	493.02	226.7
Merged-chr13-37620686-2	chr13	37620174	37621174	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205364.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	167.04	168.19	95.27	253.69	167.94	172.81	211.24	246.73	106.79
Merged-chr3-50406954-3	chr3	50406458	50407458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	36655.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	18.88	22.12	5.55	19.57	14.0	40.19	2.11	6.19	7.49
Merged-chr16-55789103-3	chr16	55788597	55789597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33041.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	137.86	103.22	61.05	158.56	92.37	65.11	157.37	114.96	59.95
Merged-chr1-33669793-3	chr1	33669284	33670284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033199)	promoter-TSS (NR_033199)	10.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	70.36	85.25	79.55	76.24	124.56	108.51	57.03	77.82	68.7
Merged-chr8-117050988-3	chr8	117050538	117051538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029686, exon 16 of 43)	exon (NM_029686, exon 16 of 43)	31411.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	76.08	69.58	48.1	87.04	81.17	73.95	80.27	64.11	33.1
Merged-chr17-69143215-3	chr17	69142736	69143736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-13508.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	69.22	47.92	66.6	66.8	62.05	67.52	81.33	87.11	44.34
Merged-chr5-130001539-3	chr5	130001068	130002068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357027, intron 1 of 2)	intron (NM_001357027, intron 1 of 2)	1481.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	200.22	210.12	128.57	257.07	197.33	164.78	224.97	223.74	107.42
Merged-chr1-191122935-3	chr1	191122439	191123439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24525.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	123.56	123.03	65.67	136.97	48.05	91.63	77.1	60.13	58.08
Merged-chr19-60790080-2	chr19	60789581	60790581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010123, intron 1 of 21)	CpG	612.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	393.57	460.78	323.73	336.68	486.1	332.77	383.4	372.3	261.05
Merged-chr15-97784313-3	chr15	97783808	97784808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026353)	promoter-TSS (NM_026353)	-57.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	137.29	121.65	136.89	159.91	125.02	133.43	137.3	113.64	83.69
Merged-chr12-36029478-3	chr12	36028961	36029961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	13017.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	116.7	128.1	118.39	169.35	130.16	116.55	65.48	52.18	41.84
Merged-chr18-49979914-1	chr18	49979414	49980414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	487.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	47.48	43.77	44.4	40.48	29.86	42.6	28.52	26.09	20.61
Merged-chr10-79909303-3	chr10	79908791	79909791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359629)	promoter-TSS (NM_001359629)	-353.0	NM_001359629	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	205.37	236.84	179.44	215.23	184.74	193.71	245.04	228.16	144.89
Merged-chr19-34607878-3	chr19	34607379	34608379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005858)	promoter-TSS (NM_001005858)	-78.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	137.29	117.96	61.05	119.43	105.43	88.42	289.39	322.34	156.76
Merged-chr9-89257224-3	chr9	89256711	89257711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45827.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	152.17	164.5	90.65	167.33	143.68	104.49	120.41	105.24	80.56
Merged-chr14-31374550-3	chr14	31374070	31375070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	37932.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	48.62	38.71	35.15	56.68	38.72	55.46	47.53	55.27	37.47
Merged-chr17-5491567-3	chr17	5491089	5492089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	101.25	139.16	124.87	134.27	111.03	131.82	168.99	178.64	84.94
Merged-chr19-10525438-6	chr19	10524958	10525958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025333)	promoter-TSS (NM_025333)	214.0	NM_172302	269061.0	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	508.56	407.79	358.88	446.66	360.61	317.5	402.41	328.97	251.06
Merged-chr8-74993859-5	chr8	74993359	74994359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178017, intron 1 of 10)	CpG	209.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	114.41	102.75	78.62	118.75	92.84	86.01	130.97	96.39	69.95
Merged-chr1-161998948-3	chr1	161998460	161999460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-6009.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	38.33	35.02	10.17	64.1	43.85	52.25	34.85	37.58	23.11
Merged-chr9-44603659-3	chr9	44603152	44604152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	-1240.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	216.81	299.05	135.97	208.49	219.73	172.81	235.53	284.31	146.76
Merged-chrX-7375961-3	chrX	7375464	7376464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019461)	promoter-TSS (NM_019461)	39.0	NR_026741	100270707.0	Mm.117112	NR_026741	ENSMUSG00000087252	Gm14379	-	predicted gene 14379	ncRNA	33.75	23.5	16.65	41.16	36.85	41.8	29.57	26.09	22.48
Merged-chr3-9020430-3	chr3	9019912	9020912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89-int|LTR|ERV1	-15689.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	88.67	74.19	39.77	98.51	66.71	53.05	54.92	61.9	30.6
Merged-chr12-111713190-3	chr12	111712692	111713692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027404)	promoter-TSS (NM_027404)	64.0	NM_027404	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	125.28	108.28	75.85	135.62	72.78	93.24	106.67	50.41	36.85
Merged-chr12-84846844-3	chr12	84846313	84847313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28989.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	70.36	45.62	35.15	73.54	55.05	61.89	43.3	32.28	24.98
Merged-chr7-38183879-3	chr7	38183378	38184378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	91.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	53.77	36.86	82.32	41.83	51.32	76.36	99.28	81.36	66.82
Merged-chr13-21783392-3	chr13	21782897	21783897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	0.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	125.85	162.2	105.44	99.86	133.89	108.51	133.08	216.22	98.68
Merged-chr2-167680141-3	chr2	167679626	167680626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8789.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	12.59	4.61	7.4	16.87	3.73	6.43	9.51	6.63	1.87
Merged-chr5-43867443-3	chr5	43866938	43867938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-1371.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	187.06	168.65	132.27	212.54	168.41	203.36	243.98	221.53	138.02
Merged-chr5-113772733-3	chr5	113772244	113773244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016926)	promoter-TSS (NM_016926)	-68.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	190.49	123.95	129.49	164.63	84.44	151.11	195.39	121.15	129.9
Merged-chr14-55098183-3	chr14	55097686	55098686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303502)	TTS (NM_001303502)	3402.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	38.33	38.71	38.85	54.65	34.06	46.62	28.52	26.53	26.23
Merged-chr11-35769418-3	chr11	35768928	35769928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145962)	promoter-TSS (NM_145962)	-67.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	147.59	78.79	96.2	139.67	63.45	90.02	163.71	65.0	54.33
Merged-chr5-100872183-3	chr5	100871678	100872678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	25949.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.72	2.76	1.85	1.35	3.27	1.61	9.51	7.52	8.12
Merged-chr18-39416932-3	chr18	39416423	39417423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70322.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	44.62	36.86	45.32	39.13	20.99	30.54	35.91	28.3	26.85
Merged-chr19-4257743-3	chr19	4257250	4258250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6128.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	78.37	64.97	76.77	67.47	36.85	56.27	71.82	62.79	53.08
Merged-chr8-19784666-3	chr8	19784194	19785194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	CpG	55118.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	220.81	168.19	108.22	224.01	205.73	166.38	109.84	64.11	35.6
Merged-chr15-59374147-3	chr15	59373652	59374652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026746)	promoter-TSS (NM_026746)	0.0	NM_153548	223593.0	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	370.69	438.67	234.94	444.64	547.21	295.79	378.11	435.09	130.53
Merged-chr6-17694541-5	chr6	17694020	17695020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	CpG	526.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	294.61	207.81	199.79	275.28	174.94	154.33	235.53	130.0	107.42
Merged-chr12-64875978-1	chr12	64875478	64876478	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41933.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	2.86	2.3	0.0	8.1	2.33	1.61	3.17	2.65	0.0
Merged-chrUn_JH584304-81587-1	chrUn_JH584304	81087	82087	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21898.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	3.17	2.21	0.0
Merged-chr14-76857609-3	chr14	76857119	76858119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97488.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	24.03	21.2	20.35	32.39	20.53	30.54	10.56	7.96	13.74
Merged-chr9-40322482-3	chr9	40321967	40322967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-1144.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	300.33	242.37	108.22	286.08	238.85	122.18	166.88	192.34	68.7
Merged-chr4-149780754-3	chr4	149780252	149781252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-6485.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	173.9	184.77	74.92	181.5	137.62	121.37	146.81	166.25	91.18
Merged-chr18-83981368-3	chr18	83980861	83981861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105201.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	43.48	34.56	21.27	32.39	36.85	22.51	73.93	77.82	23.11
Merged-chr9-65718368-3	chr9	65717874	65718874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 3 of 9)	intron (NM_172536, intron 3 of 9)	41826.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	25.74	36.4	29.6	35.76	22.86	29.74	25.35	23.43	15.61
Merged-chr17-50528696-3	chr17	50528196	50529196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTEa|LTR|ERVL-MaLR	19149.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	43.48	39.63	23.12	68.15	24.72	51.44	80.27	61.02	27.48
Merged-chr3-8993608-3	chr3	8993156	8994156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	10548.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	112.69	120.73	69.37	184.87	156.75	110.92	125.69	91.97	48.71
Merged-chr2-160225661-3	chr2	160225165	160226165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101829.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	22.88	21.66	11.1	39.81	27.99	36.97	49.64	22.99	25.61
Merged-chr18-64887712-4	chr18	64887208	64888208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-48.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	31.46	30.87	41.62	46.56	26.12	40.19	53.87	43.33	34.97
Merged-chr13-110903424-3	chr13	110902926	110903926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-73.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	66.93	44.7	54.57	47.9	66.71	39.39	70.76	66.77	43.72
Merged-chr11-3165655-2	chr11	3165181	3166181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	intron (NM_030207, intron 7 of 32)	27782.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	75.51	97.23	116.54	68.15	112.43	141.47	9.51	5.75	149.89
Merged-chr4-59823728-3	chr4	59823215	59824215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	18065.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	22.31	18.89	26.82	36.43	27.52	21.7	8.45	15.03	14.99
Merged-chr12-69500759-3	chr12	69500275	69501275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-25225.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	74.94	61.75	38.85	94.46	61.11	69.93	54.92	66.77	36.22
Merged-chr13-45974846-3	chr13	45974362	45975362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9871.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	39.47	34.1	30.52	37.78	24.72	63.5	46.47	35.82	21.86
Merged-chr14-101640507-5	chr14	101640004	101641004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033132)	promoter-TSS (NM_001033132)	-33.0	NM_001168592	66200.0	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	97.82	98.15	137.82	127.52	121.29	102.88	136.25	152.55	77.44
Merged-chr16-94498224-3	chr16	94497740	94498740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007834, exon 8 of 8)	3' UTR (NM_007834, exon 8 of 8)	28389.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	60.07	52.07	36.07	104.58	72.78	53.85	78.16	63.67	21.23
Merged-chr8-84840698-3	chr8	84840170	84841170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001297607)	promoter-TSS (NM_001297607)	-5.0	NM_009010	19358.0	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	215.66	208.74	183.14	224.68	160.48	188.09	181.66	195.88	113.04
Merged-chr14-45388863-3	chr14	45388346	45389346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	-50.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	33.75	16.59	18.5	36.43	17.73	24.92	52.81	22.99	6.25
Merged-chr2-148530683-3	chr2	148530193	148531193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87158.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	49.2	51.15	25.9	72.19	53.65	57.07	65.48	47.75	64.95
Merged-chr5-45855711-3	chr5	45855202	45856202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	850.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	33.75	36.86	27.75	40.48	20.99	24.92	46.47	28.3	14.99
Merged-chr12-4915697-3	chr12	4915200	4916200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1653.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	34.9	38.71	37.0	29.01	28.92	31.35	43.3	43.33	27.48
Merged-chr5-134229627-3	chr5	134229124	134230124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286037)	promoter-TSS (NM_001286037)	1.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	130.43	158.05	101.74	126.17	84.9	131.02	161.6	138.84	68.07
Merged-chr11-4222516-3	chr11	4222016	4223016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028022)	TTS (NM_028022)	4265.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	28.6	25.34	18.5	32.39	25.66	36.17	16.9	15.03	7.49
Merged-chr10-66818117-3	chr10	66817621	66818621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102263.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	32.04	30.87	29.6	67.47	46.18	40.19	63.37	49.96	38.72
Merged-chr13-34715574-3	chr13	34715065	34716065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-24077.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	27.46	26.73	5.55	26.99	23.33	19.29	24.29	14.15	4.37
Merged-chr2-148492389-3	chr2	148491868	148492868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48833.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	34.9	51.61	33.3	53.98	55.05	44.21	45.42	48.2	38.72
Merged-chr7-66389353-3	chr7	66388837	66389837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146191)	promoter-TSS (NM_146191)	-996.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	96.68	103.68	72.15	65.45	60.18	65.11	89.78	106.56	73.69
Merged-chr15-11996069-3	chr15	11995572	11996572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011294)	promoter-TSS (NM_011294)	-65.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	270.01	249.75	208.11	205.11	196.4	139.06	176.38	180.85	92.43
Merged-chr10-19053771-3	chr10	19053271	19054271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-38361.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	24.03	22.58	19.42	40.48	30.32	40.19	31.69	24.76	14.36
Merged-chr8-4253149-3	chr8	4252613	4253613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	11.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	66.93	64.97	91.57	66.8	67.64	63.5	95.06	68.54	54.96
Merged-chr9-96759291-3	chr9	96758784	96759784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NR_102295	319707.0	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	10.3	5.53	1.85	9.45	4.2	3.22	8.45	3.98	2.5
Merged-chr13-37633160-3	chr13	37632641	37633641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192897.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	26.89	20.27	11.1	32.39	19.13	12.06	30.63	31.84	31.85
Merged-chr18-65679513-3	chr18	65679014	65680014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-18754.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	327.79	326.7	244.19	403.48	313.96	248.37	399.24	428.02	136.77
Merged-chr13-97546329-3	chr13	97545832	97546832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13668.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	46.34	41.93	32.37	62.75	51.78	73.95	36.97	34.05	23.73
Merged-chr3-27192024-3	chr3	27191519	27192519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	9015.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	396.43	423.46	231.24	427.1	445.05	283.74	325.31	427.13	172.37
Merged-chr12-75735661-4	chr12	75735160	75736160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030750)	promoter-TSS (NM_030750)	69.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	135.58	162.2	124.87	160.58	128.29	118.96	163.71	113.19	92.43
Merged-chr6-114295728-3	chr6	114295224	114296224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	13089.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	31.46	25.34	28.67	26.99	11.2	19.29	36.97	22.99	6.87
Merged-chr13-65240983-3	chr13	65240446	65241446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35230.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	148.73	156.21	129.49	136.29	152.55	144.68	248.2	261.76	78.07
Merged-chrX-135008857-3	chrX	135008366	135009366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175446, intron 1 of 6)	CpG	343.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	179.05	156.21	131.34	169.35	142.75	143.88	137.3	126.46	100.55
Merged-chr4-115000015-3	chr4	114999518	115000518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009185)	promoter-TSS (NM_009185)	-100.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	105.26	169.57	116.54	85.69	94.7	90.83	181.66	161.83	68.07
Merged-chr7-100944473-3	chr7	100943968	100944968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-12307.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	90.38	85.71	68.45	75.57	72.78	65.91	70.76	80.03	46.22
Merged-chr17-29437420-3	chr17	29436906	29437906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-53639.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	207.08	181.09	150.77	153.84	121.76	81.99	181.66	259.99	86.18
Merged-chr19-8837505-3	chr19	8836989	8837989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136064)	promoter-TSS (NM_001136064)	22.0	NM_001136064	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	139.58	119.8	86.02	135.62	120.83	99.67	110.9	115.85	69.95
Merged-chr11-86995839-3	chr11	86995296	86996296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	36.04	47.46	32.37	34.41	41.52	50.64	43.3	47.75	33.72
Merged-chr17-24007119-3	chr17	24006629	24007629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9029.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	122.99	111.05	72.15	140.34	100.77	109.32	151.03	137.51	84.94
Merged-chr4-33289592-3	chr4	33289085	33290085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20726.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	129.28	160.35	92.5	95.14	88.64	83.59	110.9	118.94	76.19
Merged-chr6-43849400-3	chr6	43848893	43849893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-183115.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	30.89	64.05	45.32	54.65	33.12	49.03	44.36	16.8	26.23
Merged-chr5-8997216-3	chr5	8996727	8997727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-81.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	41.19	38.71	37.0	49.25	47.58	51.44	46.47	42.89	23.73
Merged-chr3-95263403-3	chr3	95262915	95263915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173347, intron 4 of 7)	intron (NM_173347, intron 4 of 7)	-12222.0	NM_134253	171388.0	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	30.89	22.58	28.67	48.58	34.52	46.62	47.53	37.58	48.71
Merged-chr9-13314149-2	chr9	13313658	13314658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	67202.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	23.45	16.13	6.47	22.94	18.66	10.45	6.34	6.19	5.0
Merged-chr12-102443779-3	chr12	102443245	102444245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-3932.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	152.74	167.73	121.17	194.32	137.62	159.15	250.32	267.95	146.76
Merged-chr13-101761853-3	chr13	101761354	101762354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	6363.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	44.05	48.84	26.82	43.86	23.79	25.72	29.57	42.45	25.61
Merged-chr11-51915726-3	chr11	51915216	51916216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51915.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	157.89	192.15	124.87	169.35	140.42	171.21	177.44	160.95	119.91
Merged-chr10-41518696-3	chr10	41518221	41519221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016898)	promoter-TSS (NM_016898)	-779.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	258.0	245.6	154.47	247.62	222.06	150.31	221.8	292.27	134.9
Merged-chr19-42099616-3	chr19	42099128	42100128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	L2|LINE|L2	9193.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	105.83	81.56	68.45	80.97	52.72	58.68	43.3	24.76	8.12
Merged-chr14-37165407-3	chr14	37164912	37165912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30090.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	37.76	55.75	33.3	49.93	44.32	35.37	54.92	67.65	52.46
Merged-chr1-23983294-3	chr1	23982788	23983788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	22352.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	6.86	9.68	9.25	9.45	4.67	4.82	7.39	3.98	0.0
Merged-chr2-170319362-3	chr2	170318855	170319855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37006.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	77.8	40.55	50.87	74.22	41.05	57.87	69.71	67.65	29.35
Merged-chr12-106034482-3	chr12	106033966	106034966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	24203.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	12.59	16.13	3.7	14.17	5.13	5.63	6.34	6.63	5.0
Merged-chr8-117256519-3	chr8	117256024	117257024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163262)	promoter-TSS (NM_001163262)	-495.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	320.35	176.48	162.79	307.67	119.43	184.07	267.21	157.41	128.65
Merged-chr15-59314983-3	chr15	59314495	59315495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009270)	promoter-TSS (NM_009270)	-97.0	NM_009270	20775.0	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	10.87	3.23	0.0	11.47	7.0	6.43	5.28	4.86	6.25
Merged-chr19-10841818-3	chr19	10841314	10842314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023044)	promoter-TSS (NM_023044)	-730.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	474.23	400.88	209.96	437.89	383.94	272.48	359.1	492.57	177.37
Merged-chr7-43667126-3	chr7	43666632	43667632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4899.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	145.3	137.31	75.85	184.87	103.56	83.59	155.26	146.36	69.32
Merged-chr6-123244400-3	chr6	123243889	123244889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190321, intron 3 of 4)	intron (NM_001190321, intron 3 of 4)	14546.0	NM_001190321	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	37.18	34.1	36.07	37.11	33.12	42.6	36.97	32.72	19.98
Merged-chr2-60855245-3	chr2	60854772	60855772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	26166.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	106.4	107.82	74.92	94.46	72.31	103.69	123.57	125.58	69.95
Merged-chr3-35932874-3	chr3	35932442	35933442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	24.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	117.84	81.56	146.14	134.27	74.64	74.75	130.97	58.81	62.45
Merged-chr13-56183722-3	chr13	56183296	56184296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4911.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	127.0	135.93	89.72	165.31	119.43	94.04	95.06	144.59	74.32
Merged-chr2-167349362-3	chr2	167348887	167349887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019835)	promoter-TSS (NM_019835)	-209.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	109.83	79.72	74.92	159.91	64.84	71.54	186.94	92.86	56.21
Merged-chr12-80046799-3	chr12	80046298	80047298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	66215.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	52.63	57.14	27.75	99.86	70.91	40.99	67.6	48.2	16.86
Merged-chr12-65172749-3	chr12	65172250	65173250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172578)	promoter-TSS (NM_172578)	-170.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	90.38	109.67	103.59	76.92	90.97	98.87	121.46	119.39	74.32
Merged-chr5-96980245-3	chr5	96979747	96980747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17442.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	133.29	181.55	121.17	157.88	123.16	107.71	149.98	158.3	122.41
Merged-chr3-127355411-3	chr3	127354916	127355916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	53642.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	36.04	15.67	17.57	29.69	14.0	19.29	84.49	89.32	41.84
Merged-chr15-6565362-3	chr15	6564869	6565869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14478.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	89.24	78.33	72.15	111.33	65.78	77.16	97.17	81.8	75.57
Merged-chr13-52100198-3	chr13	52099688	52100688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045061, intron 3 of 7)	intron (NR_045061, intron 3 of 7)	3447.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	21.17	15.67	20.35	29.01	25.66	22.51	35.91	13.27	11.24
Merged-chr2-73486460-3	chr2	73485959	73486959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289723)	promoter-TSS (NM_001289723)	-706.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	171.04	164.04	134.12	188.25	167.48	114.14	155.26	204.72	91.18
Merged-chr2-91054046-3	chr2	91053587	91054587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008948)	promoter-TSS (NM_008948)	71.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	102.97	121.19	111.92	116.73	106.36	130.21	89.78	104.79	63.7
Merged-chr14-56903162-3	chr14	56902659	56903659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029498, exon 3 of 25)	exon (NM_029498, exon 3 of 25)	16316.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	18.31	16.13	12.02	16.19	11.66	24.92	14.79	15.03	20.61
Merged-chr9-44305767-3	chr9	44305242	44306242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172162)	promoter-TSS (NM_172162)	-71.0	NM_172162	102423.0	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	117.84	110.59	90.65	113.35	129.22	118.16	129.91	131.32	45.59
Merged-chr9-122865960-3	chr9	122865463	122866463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173364)	promoter-TSS (NM_173364)	43.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	193.93	218.87	90.65	172.73	166.54	112.53	177.44	168.47	81.81
Merged-chr15-66092330-3	chr15	66091837	66092837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-115533.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	28.03	31.79	27.75	35.09	33.59	43.4	19.01	30.51	46.84
Merged-chr11-70433789-3	chr11	70433288	70434288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	1208.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	234.54	165.42	160.02	228.05	105.43	155.13	198.56	197.21	113.04
Merged-chr9-85389186-3	chr9	85388699	85389699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62049.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	79.52	74.19	49.02	73.54	54.11	55.46	77.1	76.94	56.83
Merged-chr13-100730981-3	chr13	100730484	100731484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	-42.0	NM_009874	12572.0	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	135.0	126.25	92.5	126.85	116.63	108.51	138.36	192.78	68.7
Merged-chr2-45112200-3	chr2	45111707	45112707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-53.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	167.04	164.96	100.82	190.27	132.95	151.92	211.24	240.1	131.15
Merged-chr15-58755281-3	chr15	58754786	58755786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68141.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	61.78	54.37	42.55	105.26	69.51	48.23	101.39	66.33	32.48
Merged-chr2-93590071-3	chr2	93589583	93590583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52351.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	27.46	22.58	30.52	25.64	19.13	18.49	26.4	25.65	16.86
Merged-chr19-55643622-3	chr19	55643100	55644100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045318, exon 3 of 4)	non-coding (NR_045318, exon 3 of 4)	58604.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	264.86	239.61	128.57	224.01	184.27	175.23	195.39	331.18	142.39
Merged-chr11-100401050-3	chr11	100400569	100401569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	2953.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	188.21	92.62	110.07	186.22	108.7	113.33	113.01	116.29	79.94
Merged-chr3-145118607-3	chr3	145118124	145119124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025714)	promoter-TSS (NM_025714)	24.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	389.57	337.75	280.26	380.54	316.76	233.1	349.6	293.16	209.22
Merged-chr9-87255504-3	chr9	87255012	87256012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199316)	promoter-TSS (NM_199316)	20.0	NM_199316	382090.0	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	53.77	58.98	41.62	43.18	55.05	51.44	41.19	32.72	24.98
Merged-chr2-113433980-3	chr2	113433482	113434482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010230, intron 3 of 19)	ORR1C1|LTR|ERVL-MaLR	-7082.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	32.04	27.19	35.15	26.31	14.0	14.47	14.79	16.8	9.99
Merged-chr5-33938618-3	chr5	33938074	33939074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2316.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	32.04	28.57	7.4	37.78	42.92	30.54	26.4	13.27	8.74
Merged-chr5-64376029-3	chr5	64375508	64376508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	91934.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	89.24	78.33	42.55	60.72	31.72	70.73	85.55	88.88	81.81
Merged-chr4-55814984-3	chr4	55814476	55815476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-282501.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	33.18	28.57	21.27	22.27	9.33	8.04	12.67	12.38	11.24
Merged-chr2-167701658-3	chr2	167701152	167702152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10475.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	121.28	109.67	122.09	159.91	121.29	176.03	124.63	139.72	69.32
Merged-chr9-46110811-3	chr9	46110297	46111297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	97977.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	60.07	41.93	23.12	53.3	26.12	24.11	44.36	48.2	22.48
Merged-chr7-101382445-3	chr7	101381958	101382958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-3068.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	403.87	306.88	211.81	387.29	260.78	249.98	278.83	339.14	217.96
Merged-chr2-166420490-3	chr2	166419986	166420986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26965.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	16.02	4.61	3.7	32.39	13.06	9.65	7.39	6.19	2.5
Merged-chr11-69919852-3	chr11	69919353	69920353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166593, intron 1 of 6)	intron (NM_001166593, intron 1 of 6)	777.0	NM_001166590	276770.0	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	180.77	199.52	139.67	134.94	111.96	145.49	138.36	185.27	113.66
Merged-chr10-93564816-2	chr10	93564319	93565319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359749, intron 4 of 13)	intron (NM_001359749, intron 4 of 13)	9938.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	5.15	1.84	5.55	6.07	3.27	1.61	1.06	5.31	4.37
Merged-chr4-43287551-3	chr4	43287041	43288041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	20382.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	68.07	67.27	48.1	53.98	48.05	45.82	49.64	49.96	28.73
Merged-chr14-118700174-3	chr14	118699656	118700656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	MTC|LTR|ERVL-MaLR	6063.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	28.03	21.66	30.52	14.17	7.0	12.06	32.74	27.41	23.73
Merged-chr3-127896310-3	chr3	127895781	127896781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027482)	promoter-TSS (NM_027482)	42.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	34.32	38.71	61.97	54.65	45.72	58.68	59.15	39.35	38.1
Merged-chr18-54902405-1	chr18	54901905	54902905	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	87775.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	68.07	97.23	76.77	77.59	78.84	78.77	100.34	101.26	56.21
Merged-chr13-102688351-3	chr13	102687859	102688859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-5188.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	221.38	153.9	112.84	188.92	82.11	130.21	168.99	153.87	87.43
Merged-chr7-133636917-3	chr7	133636404	133637404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178115)	promoter-TSS (NM_178115)	-771.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	85.24	128.56	99.89	116.05	125.96	110.12	110.9	176.42	89.31
Merged-chr5-142935787-3	chr5	142935281	142936281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33B|LTR|ERVL	-24574.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	23.45	20.74	20.35	18.89	14.46	20.09	27.46	15.03	13.74
Merged-chr7-43607151-3	chr7	43606651	43607651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028913)	promoter-TSS (NM_028913)	-18.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	10.3	5.99	3.7	8.77	0.93	6.43	3.17	9.73	3.75
Merged-chr7-28169926-6	chr7	28169442	28170442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007991, intron 1 of 8)	CpG	194.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	291.75	317.94	324.66	304.3	348.48	225.86	311.57	265.74	211.71
Merged-chr17-25115578-1	chr17	25115078	25116078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001163661, exon 1 of 21)	5' UTR (NM_001163661, exon 1 of 21)	327.0	NM_027880	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	76.08	63.13	71.22	124.82	106.36	118.96	107.73	115.85	52.46
Merged-chr19-5818123-3	chr19	5817632	5818632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15460.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	122.99	95.84	75.85	90.41	53.65	86.81	98.23	90.2	59.95
Merged-chr1-64690804-3	chr1	64690346	64691346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038009)	promoter-TSS (NR_038009)	-187.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	87.52	91.24	81.4	65.45	76.97	72.34	78.16	84.45	52.46
Merged-chr14-31583290-3	chr14	31582780	31583780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5897.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	5.15	11.52	8.32	10.8	3.73	9.65	21.12	11.5	6.25
Merged-chr8-75067506-3	chr8	75067047	75068047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011622, exon 13 of 15)	exon (NM_011622, exon 13 of 15)	-26071.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	96.11	83.4	85.1	94.46	101.7	137.45	178.5	169.79	81.19
Merged-chr9-85400655-3	chr9	85400152	85401152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73502.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	36.61	43.31	34.22	56.0	43.39	23.31	69.71	71.19	29.98
Merged-chr19-15925059-3	chr19	15924548	15925548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	11.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	20.59	9.22	1.85	35.76	20.06	22.51	12.67	5.75	1.25
Merged-chr11-60537635-3	chr11	60537136	60538136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-47.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	412.45	354.34	263.61	396.73	288.3	290.97	294.68	303.33	169.25
Merged-chr5-53589252-4	chr5	53588718	53589718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	CpG	-1128.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	184.77	127.18	66.6	178.8	139.02	136.64	173.21	92.41	84.94
Merged-chr3-86110249-2	chr3	86109747	86110747	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082414, intron 7 of 14)	intron (NM_001082414, intron 7 of 14)	25813.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	4.0	2.3	3.7	8.77	18.19	12.86	22.18	26.53	19.36
Merged-chr7-38019066-3	chr7	38018557	38019557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	CpG	495.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	330.65	311.95	271.01	295.53	363.88	294.99	329.53	228.16	176.12
Merged-chr18-66458141-2	chr18	66457651	66458651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021451)	promoter-TSS (NM_021451)	-453.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	327.21	299.51	172.04	361.65	273.37	221.04	267.21	293.6	138.65
Merged-chr15-78532285-3	chr15	78531769	78532769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2618.0	NM_028331	72709.0	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	10.87	15.67	4.62	8.1	5.13	12.86	14.79	12.82	9.37
Merged-chr12-21265790-1	chr12	21265290	21266290	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 25 of 26)	intron (NM_001004364, intron 25 of 26)	20494.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	6.86	7.37	18.5	6.07	5.13	8.04	9.51	3.54	12.49
Merged-chr3-121292061-3	chr3	121291544	121292544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	CpG	304.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	228.82	240.53	155.39	179.47	170.74	142.27	254.54	296.25	131.78
Merged-chr1-95528917-3	chr1	95528410	95529410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138684.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	5.15	8.29	7.4	10.8	17.73	9.65	9.51	13.71	6.25
Merged-chr7-4064074-4	chr7	4063585	4064585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113474)	promoter-TSS (NM_001113474)	-881.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	93.82	94.0	65.67	101.88	80.24	76.36	102.45	91.97	71.82
Merged-chr17-47441533-3	chr17	47441033	47442033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145489, intron 1 of 4)	MER5A1|DNA|hAT-Charlie	-4158.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	12.59	12.44	0.0	19.57	11.2	1.61	12.67	9.29	9.99
Merged-chr6-113482725-3	chr6	113482228	113483228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133930)	promoter-TSS (NM_133930)	-628.0	NM_133930	171508.0	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811|i11E7	cysteine-rich with EGF-like domains 1	protein-coding	209.37	225.78	151.69	207.81	222.52	212.2	183.78	189.25	146.76
Merged-chr1-138322856-3	chr1	138322361	138323361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49123.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	195.07	253.43	94.35	176.78	174.47	142.27	165.82	209.59	119.28
Merged-chr3-95675781-4	chr3	95675293	95676293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144899)	TTS (NM_144899)	12124.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	96.11	90.31	86.02	107.95	82.57	110.12	133.08	169.79	78.69
Merged-chr17-83527389-3	chr17	83526876	83527876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13043.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	31.46	30.41	37.0	53.3	43.85	70.73	36.97	59.25	34.97
Merged-chr4-116053723-5	chr4	116053231	116054231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028142, exon 1 of 6)	exon (NM_028142, exon 1 of 6)	145.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	188.78	189.38	90.65	188.92	155.81	165.58	228.14	240.54	127.4
Merged-chr16-33530764-1	chr16	33530264	33531264	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12169.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	116.7	79.25	67.52	232.78	233.25	115.75	73.93	82.24	30.6
Merged-chr16-49818763-3	chr16	49818275	49819275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-36879.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	68.07	81.56	39.77	78.94	62.98	71.54	72.88	76.49	54.96
Merged-chr16-95612193-3	chr16	95611688	95612688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25595.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	11.44	5.53	0.0	24.29	5.13	12.06	19.01	15.03	6.25
Merged-chr2-118545976-3	chr2	118545473	118546473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	-1386.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	34.32	35.02	23.12	33.74	18.66	20.9	45.42	49.52	32.48
Merged-chr2-152226840-3	chr2	152226313	152227313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007788)	promoter-TSS (NM_007788)	-27.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	105.26	90.77	135.97	103.23	87.24	123.78	119.35	89.32	96.18
Merged-chr13-42527111-3	chr13	42526598	42527598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153701.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	70.36	67.74	24.05	60.72	35.92	43.4	74.99	79.59	21.23
Merged-chr2-52960922-3	chr2	52960426	52961426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	103058.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	58.35	49.3	46.25	37.78	39.65	60.28	35.91	36.26	34.35
Merged-chr2-32712360-3	chr2	32711899	32712899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037217)	TTS (NR_037217)	385.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	164.75	164.04	161.87	159.91	143.22	159.95	127.8	141.94	123.03
Merged-chr9-99212855-3	chr9	99212332	99213332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	24407.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	44.62	23.5	28.67	35.76	21.46	30.54	27.46	27.86	23.73
Merged-chr2-91965646-3	chr2	91965144	91966144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2081.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	325.5	312.87	228.46	278.66	283.17	245.16	286.23	419.62	170.5
Merged-chr9-47683026-2	chr9	47682527	47683527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	135181.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	38.9	41.01	39.77	53.98	48.52	28.13	3.17	2.21	3.75
Merged-chr4-139198216-3	chr4	139197716	139198716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	4105.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	163.04	199.52	159.09	184.87	146.48	147.09	171.1	229.93	135.52
Merged-chr17-26531753-3	chr17	26531228	26532228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23256.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	244.84	211.04	91.57	244.92	169.34	141.47	161.6	185.27	105.55
Merged-chr2-24919594-3	chr2	24919099	24920099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172545)	promoter-TSS (NM_172545)	10.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	82.95	58.98	64.75	85.01	45.25	59.48	74.99	51.73	53.71
Merged-chr2-126497010-3	chr2	126496512	126497512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	2835.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	49.2	30.41	33.3	51.95	32.19	53.85	33.8	22.11	33.72
Merged-chr16-4624903-3	chr16	4624357	4625357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	89.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	168.76	143.3	88.8	141.02	126.89	135.04	164.76	179.96	86.81
Merged-chr14-64327696-3	chr14	64327201	64328201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	MLT1F1|LTR|ERVL-MaLR	89255.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	37.18	56.68	14.8	73.54	72.31	32.15	69.71	45.1	33.1
Merged-chr16-32163659-3	chr16	32163155	32164155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1939.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	113.84	136.39	83.25	102.56	121.76	104.49	125.69	119.83	126.15
Merged-chr7-143059640-3	chr7	143059141	143060141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-5955.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	97.82	96.3	81.4	60.72	50.38	76.36	59.15	65.44	61.83
Merged-chr16-93816599-3	chr16	93816122	93817122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15499.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	173.33	142.84	92.5	197.02	118.49	116.55	166.88	197.65	94.93
Merged-chr13-24464598-3	chr13	24464107	24465107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 14 of 16)	RMER5|LTR|ERV1	49485.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	50.91	24.88	25.9	45.88	31.72	34.56	55.98	54.83	21.86
Merged-chr1-21078634-3	chr1	21078155	21079155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	570.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	26.31	25.34	12.02	17.54	21.46	22.51	11.62	13.71	7.49
Merged-chr16-19973646-3	chr16	19973138	19974138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9411.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	34.9	27.19	33.3	21.59	23.33	36.17	34.85	42.89	34.97
Merged-chr11-79259036-3	chr11	79258536	79259536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4341.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	216.24	169.11	82.32	188.92	111.96	131.82	147.87	167.14	73.69
Merged-chr1-125561421-1	chr1	125560921	125561921	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028787, intron 1 of 15)	intron (NM_028787, intron 1 of 15)	419.0	NM_028787	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	101.25	102.75	92.5	187.57	140.42	161.56	181.66	155.64	88.06
Merged-chr15-58692042-3	chr15	58691541	58692541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	131386.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	28.03	33.64	24.05	31.04	25.66	29.74	24.29	28.3	16.86
Merged-chr19-41402768-3	chr19	41402268	41403268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17698.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	144.73	118.88	123.94	136.97	93.3	149.5	149.98	158.74	98.05
Merged-chr1-132333000-3	chr1	132332489	132333489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028778, exon 7 of 7)	3' UTR (NM_028778, exon 7 of 7)	16864.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	29.17	45.62	30.52	28.34	26.59	41.8	43.3	45.99	41.22
Merged-chr12-114991110-1	chr12	114990610	114991610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-477416.0	NR_106063	102465664.0		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	4.58	5.99	1.85	3.37	1.87	3.22	1.06	2.21	1.25
Merged-chr6-4798544-3	chr6	4798024	4799024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51218.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	17.73	9.68	3.7	30.36	12.6	13.66	13.73	8.4	18.74
Merged-chr9-108507962-3	chr9	108507480	108508480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133794)	promoter-TSS (NM_133794)	-25.0	NM_133794	97541.0	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	156.17	169.57	111.92	121.45	103.56	143.88	104.56	117.62	93.68
Merged-chr1-136415362-3	chr1	136414922	136415922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	97.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	384.99	355.26	264.54	379.19	355.01	280.52	348.54	324.55	202.35
Merged-chr4-63372128-3	chr4	63371613	63372613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 18 of 21)	intron (NM_001045514, intron 18 of 21)	9664.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	20.02	18.89	15.72	25.64	23.79	11.25	17.96	21.67	9.37
Merged-chr2-160083799-3	chr2	160083284	160084284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67131.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	66.93	85.71	47.17	72.87	69.04	40.19	35.91	31.39	28.73
Merged-chr3-88513756-5	chr3	88513239	88514239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10387.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	44.62	19.81	14.8	37.11	11.2	11.25	27.46	14.59	8.74
Merged-chr11-53300587-3	chr11	53300086	53301086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008300)	promoter-TSS (NM_008300)	-107.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	486.25	540.04	367.21	451.39	454.85	354.47	364.38	444.82	279.79
Merged-chr7-99381431-3	chr7	99380947	99381947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-71.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	155.6	151.6	171.12	212.54	159.08	178.44	173.21	208.7	123.03
Merged-chr2-30048858-3	chr2	30048362	30049362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	17.0	NM_001008498	71820.0	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	138.44	152.06	114.69	146.41	149.75	129.41	144.7	180.4	76.19
Merged-chr7-25120605-3	chr7	25120102	25121102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163555, intron 4 of 13)	intron (NM_001163555, intron 4 of 13)	11858.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	84.09	70.04	75.85	94.46	33.12	86.01	88.72	68.09	93.68
Merged-chr1-87650725-3	chr1	87650261	87651261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	30449.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	193.35	194.45	145.22	168.0	121.76	158.35	167.93	170.68	165.5
Merged-chr7-141476382-3	chr7	141475869	141476869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252588)	promoter-TSS (NM_001252588)	-11.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	176.76	104.14	99.89	163.96	100.3	188.09	202.79	143.7	104.92
Merged-chr17-12991849-3	chr17	12991324	12992324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	CpG	435.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	336.94	447.42	382.01	357.6	377.87	376.98	373.89	389.99	267.92
Merged-chr8-126807476-3	chr8	126806920	126807920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41600.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	139.01	74.19	56.42	155.86	72.78	123.78	95.06	69.42	55.58
Merged-chr13-41605733-3	chr13	41605220	41606220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-496.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	339.8	309.19	270.09	381.22	235.59	273.29	333.75	286.08	219.21
Merged-chr8-117252868-3	chr8	117252350	117253350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4169.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	193.93	181.09	118.39	180.82	130.62	125.39	178.5	194.11	111.79
Merged-chr2-166155577-3	chr2	166155014	166156014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252578)	promoter-TSS (NM_001252578)	169.0	NM_001252579	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	25.74	13.36	11.1	31.71	15.39	14.47	16.9	10.17	2.5
Merged-chr10-77622300-3	chr10	77621793	77622793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-28.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	375.27	363.1	306.16	383.91	327.02	327.14	329.53	360.81	212.34
Merged-chr7-90039638-3	chr7	90039126	90040126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 3 of 5)	intron (NR_110365, intron 3 of 5)	10467.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	283.74	226.71	148.92	302.27	228.12	196.12	238.7	296.25	120.53
Merged-chr18-53250235-3	chr18	53249725	53250725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4563.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	323.21	285.69	223.84	390.66	299.5	258.02	325.31	391.32	188.61
Merged-chr11-109651091-3	chr11	109650649	109651649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313976, intron 1 of 10)	CpG	228.0	NM_001313976	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	278.59	222.1	221.06	232.1	139.49	187.28	240.81	129.55	159.88
Merged-chr19-40612339-3	chr19	40611838	40612838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026260)	promoter-TSS (NM_026260)	-28.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	46.34	40.55	20.35	60.05	41.52	43.4	47.53	35.82	23.73
Merged-chr16-27374286-3	chr16	27373765	27374765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4026.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	32.04	33.18	22.2	37.11	14.93	25.72	34.85	17.69	13.74
Merged-chr13-23531731-3	chr13	23531231	23532231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153173)	TTS (NM_153173)	687.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	156.17	155.28	114.69	128.2	114.29	172.01	136.25	178.64	143.64
Merged-chr15-81802576-3	chr15	81802071	81803071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153484)	promoter-TSS (NM_153484)	42.0	NR_155271	100504312.0	Mm.384036	NR_155271	ENSMUSG00000097613	Gm17597	-	predicted gene, 17597	ncRNA	72.08	69.58	43.47	79.62	61.11	77.16	70.76	69.42	29.98
Merged-chr10-69222167-3	chr10	69221666	69222666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	MER63C|DNA|hAT-Blackjack	8972.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	58.35	50.23	52.72	40.48	24.72	27.33	46.47	44.66	38.1
Merged-chr2-4499479-3	chr2	4498979	4499979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-60275.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	40.04	43.31	18.5	47.23	38.72	50.64	48.58	67.21	40.59
Merged-chrX-169110220-3	chrX	169109740	169110740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-2638.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	6.86	7.83	0.0	17.54	12.13	12.06	13.73	7.52	6.25
Merged-chr13-58401613-3	chr13	58401075	58402075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_031761)	promoter-TSS (NR_031761)	542.0	NM_001360494	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	442.2	456.18	307.08	377.17	343.35	352.06	364.38	380.71	295.4
Merged-chr17-24171938-3	chr17	24171437	24172437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2259.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	351.81	334.07	246.96	261.12	217.39	200.95	332.7	494.79	182.99
Merged-chr18-6136677-1	chr18	6136177	6137177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029277)	promoter-TSS (NM_029277)	-579.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	229.97	248.36	127.64	203.09	178.21	172.81	254.54	235.23	132.4
Merged-chr2-18681101-3	chr2	18680590	18681590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007552, intron 1 of 9)	CpG	4072.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	10.87	3.23	7.4	11.47	0.47	0.0	5.28	5.31	5.62
Merged-chr2-164913664-3	chr2	164913167	164914167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1917.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	78.94	72.34	97.12	79.62	71.38	90.83	87.66	105.68	57.46
Merged-chr5-112343225-3	chr5	112342714	112343714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	119.0	NM_138646	192232.0	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2	protein-coding	590.36	523.91	285.81	592.4	428.25	292.58	539.71	469.58	176.12
Merged-chr14-122534244-3	chr14	122533746	122534746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-82.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	34.9	38.71	44.4	47.23	34.52	32.15	60.2	48.2	27.48
Merged-chr11-76482380-3	chr11	76481877	76482877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	12118.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	142.44	140.54	132.27	150.46	125.96	163.17	129.91	165.37	83.69
Merged-chrX-99042556-3	chrX	99042055	99043055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199018)	promoter-TSS (NM_199018)	-26.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	48.05	50.23	50.87	47.23	41.52	37.78	34.85	42.45	42.47
Merged-chr4-137818539-3	chr4	137818041	137819041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22157.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	17.73	19.35	17.57	30.36	15.39	12.06	15.84	14.15	6.25
Merged-chr6-87838907-3	chr6	87838415	87839415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133934)	promoter-TSS (NM_133934)	-156.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	372.41	371.85	232.16	298.23	332.15	262.84	276.72	368.77	187.36
Merged-chr3-81113090-3	chr3	81112571	81113571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	B4A|SINE|B4	76655.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	68.07	81.56	40.7	70.17	49.45	52.25	80.27	79.15	38.1
Merged-chr2-32607855-3	chr2	32607349	32608349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	864.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	195.64	123.95	97.12	174.75	93.77	99.67	180.61	181.73	99.3
Merged-chr13-43778314-3	chr13	43777840	43778840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6772.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	180.2	134.55	98.05	216.58	123.16	121.37	129.91	141.49	74.94
Merged-chr14-50930041-1	chr14	50929541	50930541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033271, intron 2 of 6)	intron (NM_001033271, intron 2 of 6)	808.0	NM_001310506	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	141.3	126.25	141.52	124.15	117.09	155.13	129.91	143.7	89.93
Merged-chr10-94147879-3	chr10	94147356	94148356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011629)	promoter-TSS (NM_011629)	-75.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	206.51	179.71	170.19	182.85	159.55	126.19	203.84	170.68	106.79
Merged-chr5-43885214-3	chr5	43884728	43885728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	16419.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	97.25	127.64	58.27	126.85	93.77	106.1	106.67	107.0	52.46
Merged-chr18-60805892-3	chr18	60805413	60806413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	2064.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	433.04	424.84	253.44	209.84	155.35	162.37	280.95	408.56	163.0
Merged-chr10-37320237-3	chr10	37319729	37320729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181303.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	61.21	57.6	36.07	45.88	41.99	22.51	70.76	73.84	28.73
Merged-chr14-70060500-3	chr14	70059977	70060977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028560)	TTS (NM_028560)	-16968.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	106.4	93.54	89.72	118.08	67.64	62.7	155.26	187.92	84.31
Merged-chr11-79527090-3	chr11	79526602	79527602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033711, exon 2 of 2)	3' UTR (NM_001033711, exon 2 of 2)	-3340.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	251.7	252.05	149.84	246.27	165.14	174.42	163.71	193.67	101.17
Merged-chr11-74770801-3	chr11	74770303	74771303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026197)	promoter-TSS (NM_026197)	-60.0	NM_026197	67493.0	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	106.4	76.03	75.85	122.12	64.84	102.88	94.0	74.28	58.71
Merged-chr9-114742935-3	chr9	114742420	114743420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	11717.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	80.66	75.11	43.47	64.77	60.18	84.4	92.94	103.47	64.95
Merged-chr8-105225179-3	chr8	105224669	105225669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145604)	promoter-TSS (NM_145604)	-19.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	73.79	58.52	97.12	51.95	51.78	81.99	77.1	71.19	68.7
Merged-chr6-82652623-3	chr6	82652119	82653119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025882, intron 1 of 3)	CpG	246.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	175.05	158.05	132.27	161.93	182.87	110.92	170.05	124.69	87.43
Merged-chr5-147748202-3	chr5	147747682	147748682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.72	10.6	11.1	7.42	6.53	16.08	8.45	5.75	3.75
Merged-chr16-91379171-3	chr16	91378679	91379679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	GC_rich|Low_complexity|Low_complexity	6396.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	93.24	105.52	55.5	110.65	79.31	92.44	85.55	90.2	63.7
Merged-chr2-93045646-3	chr2	93045153	93046153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177536, intron 1 of 6)	CpG	491.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	97.25	83.86	79.55	114.7	77.91	86.81	127.8	43.77	43.72
Merged-chr13-81783189-3	chr13	81782719	81783719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007684)	promoter-TSS (NM_007684)	-28.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	350.1	324.85	221.06	355.58	304.16	258.02	332.7	375.4	213.59
Merged-chr6-136827719-1	chr6	136827219	136828219	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 1 of 11)	CpG	497.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	552.6	634.5	342.23	569.46	649.38	321.52	449.93	591.18	236.7
Merged-chr19-16132578-3	chr19	16132067	16133067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008139)	promoter-TSS (NM_008139)	-264.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	141.3	100.91	133.19	132.24	67.18	99.67	155.26	88.88	63.08
Merged-chr5-115341212-3	chr5	115340635	115341635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026933)	promoter-TSS (NM_026933)	26.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	252.85	252.51	243.26	203.76	175.41	172.81	198.56	256.46	169.25
Merged-chr8-120619805-5	chr8	120619319	120620319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	14563.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	379.84	331.76	234.94	470.95	426.86	296.6	298.9	396.18	168.62
Merged-chr13-63256946-3	chr13	63256445	63257445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	16916.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	36.04	34.1	33.3	37.78	35.45	36.17	40.14	45.99	34.97
Merged-chr8-35135821-1	chr8	35135321	35136321	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-170131.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.29	3.69	7.4	4.05	3.73	0.0	7.39	7.07	7.49
Merged-chr4-126126923-3	chr4	126126401	126127401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 4 of 10)	intron (NM_028800, intron 4 of 10)	-21102.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	51.48	59.44	51.8	49.25	31.72	62.7	34.85	28.74	27.48
Merged-chr12-98628193-3	chr12	98627677	98628677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289572)	promoter-TSS (NM_001289572)	35.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	17.73	21.2	0.92	20.92	15.39	12.06	16.9	13.27	10.62
Merged-chr13-113242304-2	chr13	113241810	113242810	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32651.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.0	0.0	0.0	22.94	15.86	20.09	42.25	19.01	25.61
Merged-chr7-30413860-3	chr7	30413442	30414442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011662, intron 1 of 4)	intron (NM_011662, intron 1 of 4)	154.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	318.06	367.71	246.96	306.32	267.31	259.62	351.71	406.35	237.95
Merged-chr5-101972837-3	chr5	101972338	101973338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 4 of 66)	B2_Mm2|SINE|B2	97083.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	30.89	38.71	33.3	33.74	22.86	25.72	40.14	26.97	26.85
Merged-chr17-88064165-3	chr17	88063648	88064648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	784.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	170.47	181.55	148.92	215.91	193.13	175.23	227.08	240.98	142.39
Merged-chr15-44619133-3	chr15	44618656	44619656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-71.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	204.22	223.02	186.84	214.56	218.79	190.5	210.18	233.91	135.52
Merged-chr16-94526957-3	chr16	94526463	94527463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007834)	promoter-TSS (NM_007834)	-334.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	219.67	185.7	119.32	186.9	183.34	173.62	222.86	197.65	93.05
Merged-chr18-66476539-3	chr18	66476031	66477031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17927.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	101.83	82.94	37.92	117.4	121.29	114.94	170.05	241.87	108.67
Merged-chr7-122297857-3	chr7	122297349	122298349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	8724.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	93.24	62.21	42.55	43.18	27.52	39.39	42.25	39.8	32.48
Merged-chr4-45531254-3	chr4	45530738	45531738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-410.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	175.62	136.39	119.32	160.58	138.09	133.43	139.42	139.28	99.92
Merged-chr12-25143663-3	chr12	25143149	25144149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14475.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	89.24	98.15	55.5	45.88	63.91	36.97	58.09	78.71	19.36
Merged-chr11-90029552-1	chr11	90029052	90030052	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026433)	promoter-TSS (NM_026433)	-796.0	NM_026433	67888.0	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	2.29	0.0	5.55	2.02	1.4	3.22	10.56	5.75	5.0
Merged-chr16-50737778-3	chr16	50737277	50738277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5004.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	132.72	113.35	49.95	126.17	122.69	102.88	90.83	142.38	75.57
Merged-chr18-53246636-3	chr18	53246112	53247112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	950.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	280.88	282.0	186.84	302.27	229.99	213.0	289.39	379.38	162.38
Merged-chr13-23526594-3	chr13	23526099	23527099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4445.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	22.31	18.89	14.8	24.96	18.66	12.86	13.73	15.03	23.73
Merged-chr1-87181109-3	chr1	87180615	87181615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2199.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	7.44	8.75	7.4	12.14	8.4	4.82	7.39	4.42	3.12
Merged-chr7-34389738-3	chr7	34389244	34390244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360654)	promoter-TSS (NM_001360654)	-39.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	267.72	273.25	221.06	236.83	220.19	245.16	301.01	211.36	161.13
Merged-chr4-59862161-2	chr4	59861658	59862658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	(TG)n|Simple_repeat|Simple_repeat	52898.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	52.06	56.22	46.25	70.17	55.51	80.38	20.07	14.59	19.36
Merged-chr17-71190795-3	chr17	71190292	71191292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	6814.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	137.86	157.59	123.02	145.06	102.17	91.63	142.59	179.52	92.43
Merged-chr18-61448334-6	chr18	61447803	61448803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36304.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	184.77	168.65	167.42	202.42	136.22	146.29	223.91	191.46	129.28
Merged-chr14-14012545-3	chr14	14011994	14012994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139227)	promoter-TSS (NM_139227)	3.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	201.93	179.71	186.84	224.68	111.96	135.84	183.78	82.24	133.65
Merged-chr2-158177176-3	chr2	158176683	158177683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14825.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	78.94	59.9	76.77	119.43	70.91	118.16	107.73	94.18	55.58
Merged-chr2-163017246-3	chr2	163016715	163017715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172150)	promoter-TSS (NM_172150)	-138.0	NM_172150	245866.0	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	142.44	173.72	137.82	141.02	176.81	147.09	148.92	148.13	92.43
Merged-chr6-125147013-3	chr6	125146521	125147521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	1797.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	196.79	150.22	77.7	128.2	94.23	88.42	103.51	120.27	91.18
Merged-chr2-34609685-3	chr2	34609201	34610201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	145531.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	82.38	87.55	49.02	70.17	73.71	65.91	57.03	83.57	57.46
Merged-chr6-42392102-3	chr6	42391589	42392589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8149.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	233.4	203.21	121.17	266.51	156.75	139.86	234.47	244.08	89.93
Merged-chr15-84246412-3	chr15	84245909	84246909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	intron (NM_133167, intron 1 of 12)	14366.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	96.68	113.35	74.0	75.57	69.51	118.96	125.69	130.88	105.55
Merged-chr4-115640762-3	chr4	115640266	115641266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007823, intron 3 of 11)	intron (NM_007823, intron 3 of 11)	6939.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	37.76	43.31	29.6	26.31	29.86	33.76	60.2	90.64	34.35
Merged-chr18-73541777-3	chr18	73541283	73542283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30922.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	146.45	143.76	82.32	199.72	174.94	159.95	147.87	171.12	88.68
Merged-chr4-150656137-3	chr4	150655645	150656645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3971.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	61.78	50.23	33.3	61.4	49.92	27.33	79.21	58.81	29.35
Merged-chr17-45563833-3	chr17	45563327	45564327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	-109.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	174.48	119.34	131.34	137.64	81.64	105.3	80.27	87.99	88.06
Merged-chr6-47636758-3	chr6	47636266	47637266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18328.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	165.9	225.32	128.57	184.87	176.34	108.51	210.18	251.15	111.79
Merged-chr4-150009100-3	chr4	150008593	150009593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-70.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	265.43	191.23	207.19	241.55	180.07	200.95	220.74	190.57	129.28
Merged-chr17-27008517-3	chr17	27008012	27009012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	-9523.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	17.16	15.21	5.55	13.49	7.93	16.88	29.57	9.73	11.24
Merged-chr7-121080876-3	chr7	121080356	121081356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-2582.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	44.62	52.07	42.55	72.19	48.05	81.18	73.93	72.96	49.34
Merged-chr7-35586192-3	chr7	35585685	35586685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-62.0	NM_145633	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	23.45	15.21	26.82	12.14	10.73	25.72	21.12	7.52	20.61
Merged-chrX-144338598-3	chrX	144338097	144339097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037145, intron 5 of 26)	RMER10B|LTR|ERVL	20631.0	NM_026247	67574.0	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031	asparagine-linked glycosylation 13	protein-coding	9.72	9.68	18.5	9.45	4.2	6.43	10.56	13.71	3.75
Merged-chr7-25129721-3	chr7	25129224	25130224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 1 of 13)	intron (NM_001163556, intron 1 of 13)	2736.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	149.88	148.37	157.24	163.96	114.76	117.35	204.9	206.05	124.91
Merged-chr17-26509641-3	chr17	26509156	26510156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1184.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	343.23	275.55	128.57	298.23	254.25	196.93	219.69	233.02	148.01
Merged-chr7-126566450-3	chr7	126565918	126566918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146200)	promoter-TSS (NM_146200)	-52.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	50.34	47.46	40.7	85.01	59.71	82.79	89.78	69.42	46.84
Merged-chr4-103119777-1	chr4	103119277	103120277	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	CpG	387.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	296.32	261.26	285.81	259.77	210.86	238.73	293.62	254.25	189.23
Merged-chr13-23533776-3	chr13	23533270	23534270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175661)	promoter-TSS (NM_175661)	-141.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	14.3	25.8	35.15	20.24	13.53	22.51	26.4	36.7	24.36
Merged-chr1-64295506-3	chr1	64295012	64296012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-174123.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	102.97	96.3	124.87	124.15	77.44	103.69	95.06	102.14	79.32
Merged-chr12-4211264-3	chr12	4210777	4211777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 19 of 21)	intron (NM_001159537, intron 19 of 21)	22688.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	48.62	57.14	55.5	67.47	61.11	58.68	47.53	53.06	42.47
Merged-chr11-73177716-3	chr11	73177209	73178209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025318)	promoter-TSS (NM_025318)	626.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	139.58	145.61	123.94	156.53	142.29	183.26	165.82	163.6	113.66
Merged-chr1-72710918-1	chr1	72710418	72711418	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	-342.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	65.79	70.5	61.97	70.17	71.38	73.14	70.76	107.0	63.7
Merged-chr17-12991304-3	chr17	12990803	12991803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	956.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	136.72	236.38	147.99	148.44	182.87	192.91	189.06	295.37	144.89
Merged-chr4-117550291-3	chr4	117549792	117550792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080469)	promoter-TSS (NM_080469)	-32.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	106.97	124.87	92.5	136.97	145.55	76.36	139.42	127.79	39.97
Merged-chr2-148477592-1	chr2	148477092	148478092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-34057.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	26.89	19.35	9.25	3.37	4.2	4.82	1.06	1.77	3.75
Merged-chr8-92356120-3	chr8	92355597	92356597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033641)	promoter-TSS (NR_033641)	23.0	NR_110452	71296.0	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	45.76	31.33	33.3	23.62	14.0	17.68	26.4	22.99	12.49
Merged-chr17-67305007-3	chr17	67304509	67305509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	49450.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	90.96	65.43	22.2	87.71	60.65	58.68	163.71	174.21	94.93
Merged-chr10-91171673-3	chr10	91171149	91172149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011605)	promoter-TSS (NM_011605)	-30.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	192.21	187.08	160.02	132.92	153.48	160.76	149.98	145.92	174.87
Merged-chr11-79224691-3	chr11	79224188	79225188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18336.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	189.92	164.04	130.42	193.64	179.61	169.6	228.14	263.09	152.38
Merged-chr9-15034535-3	chr9	15034016	15035016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10962.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	42.9	46.08	40.7	66.12	74.17	53.85	62.31	31.39	26.23
Merged-chr4-6415422-3	chr4	6414898	6415898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38873.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	89.81	91.24	57.35	142.37	120.36	98.87	117.24	122.92	59.33
Merged-chr19-45005658-3	chr19	45005158	45006158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	-5.0	NM_001348254	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	100.68	85.71	103.59	87.04	101.7	108.51	83.44	100.37	69.95
Merged-chr9-45828662-3	chr9	45828149	45829149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-11.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	17.16	17.51	18.5	21.59	14.46	28.13	32.74	17.69	21.23
Merged-chr12-51866479-3	chr12	51865971	51866971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36935.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	256.28	169.57	71.22	273.26	168.41	146.29	212.29	164.04	107.42
Merged-chr17-6816400-3	chr17	6815899	6816899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33619.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	32.61	19.81	12.02	41.16	18.66	3.22	16.9	27.86	5.0
Merged-chr4-116668437-3	chr4	116667955	116668955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16781.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	170.47	172.79	153.54	192.29	155.35	158.35	136.25	228.6	104.92
Merged-chr7-80715431-3	chr7	80714920	80715920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 37 of 37)	intron (NM_016721, intron 37 of 37)	-26543.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	27.46	11.98	14.8	23.62	16.33	36.97	14.79	18.13	23.11
Merged-chr4-48045105-3	chr4	48044605	48045605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015743)	promoter-TSS (NM_015743)	-200.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	223.1	191.69	150.77	296.2	283.17	225.86	253.48	242.75	133.02
Merged-chr2-60172808-3	chr2	60172298	60173298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37138.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	38.9	31.33	25.9	42.51	24.26	31.35	30.63	17.69	23.73
Merged-chr16-20804679-3	chr16	20804169	20805169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70158.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	5.72	5.07	7.4	4.72	1.4	11.25	17.96	6.63	6.25
Merged-chr1-182517552-3	chr1	182517043	182518043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009794)	promoter-TSS (NM_009794)	67.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	67.5	37.32	36.07	76.92	44.78	43.4	27.46	12.82	16.24
Merged-chr11-50109017-3	chr11	50108518	50109518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-22342.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	172.76	176.94	133.19	174.75	173.07	137.45	215.46	241.42	112.42
Merged-chr3-95994670-3	chr3	95994164	95995164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023320, intron 2 of 5)	intron (NM_023320, intron 2 of 5)	1175.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	199.65	199.06	109.14	198.37	224.86	152.72	260.88	298.02	114.29
Merged-chr2-59188816-3	chr2	59188311	59189311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	Lx7|LINE|L1	27961.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	58.92	58.98	49.95	54.65	48.98	54.66	77.1	80.92	61.83
Merged-chr19-34206364-3	chr19	34205857	34206857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-11151.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	54.35	28.57	28.67	49.93	26.12	28.13	54.92	29.63	35.6
Merged-chr1-34821621-3	chr1	34821123	34822123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 3 of 6)	L1ME2|LINE|L1	19901.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	20.02	11.98	6.47	33.74	16.33	22.51	21.12	28.74	26.23
Merged-chr7-12978202-3	chr7	12977690	12978690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168561, exon 1 of 5)	5' UTR (NM_001168561, exon 1 of 5)	342.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	193.35	183.39	155.39	134.94	139.02	139.86	208.07	265.74	148.01
Merged-chr5-123930686-3	chr5	123930183	123931183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134767)	promoter-TSS (NM_001134767)	-6.0	NM_001134767	208908.0	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|G1-485-3|Gm150|repro29	coiled-coil domain containing 62	protein-coding	266.58	247.9	148.92	213.21	214.13	160.76	235.53	210.91	93.68
Merged-chr10-128494223-1	chr10	128493723	128494723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010860)	promoter-TSS (NM_010860)	-337.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	321.49	232.7	210.89	246.27	188.47	190.5	284.11	286.08	128.65
Merged-chr10-44631775-3	chr10	44631274	44632274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-173026.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	207.66	193.07	147.07	216.58	202.0	182.46	194.34	219.31	116.79
Merged-chr7-127345617-3	chr7	127345157	127346157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146202)	promoter-TSS (NM_146202)	-343.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	129.86	137.77	142.44	123.47	86.77	121.37	126.74	109.22	85.56
Merged-chr4-9131806-3	chr4	9131314	9132314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-137479.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	7.44	11.52	7.4	19.57	19.59	12.86	13.73	10.17	16.24
Merged-chr5-103752951-3	chr5	103752470	103753470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-1192.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	351.81	444.66	194.24	220.63	278.04	213.0	259.82	421.39	199.85
Merged-chr3-106483505-3	chr3	106482993	106483993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1043.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	100.68	108.28	90.65	121.45	96.1	69.93	113.01	131.77	54.96
Merged-chr10-77606109-3	chr10	77605602	77606602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	5.0	NM_019929	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	279.73	205.97	152.62	244.25	200.6	193.71	218.63	217.55	129.9
Merged-chr5-24752174-3	chr5	24751606	24752606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153076, intron 3 of 3)	intron (NM_153076, intron 3 of 3)	5737.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	13.16	8.29	26.82	48.58	19.13	33.76	51.75	42.89	26.85
Merged-chr19-12796759-3	chr19	12796267	12797267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	574.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	502.26	513.77	263.61	402.13	434.79	258.02	411.91	573.05	225.45
Merged-chr15-62055456-1	chr15	62054956	62055956	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	16199.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	147.59	133.63	136.89	133.59	141.82	117.35	139.42	168.02	98.68
Merged-chr12-35292165-3	chr12	35291658	35292658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97261.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	40.04	36.4	33.3	37.11	34.99	49.03	28.52	34.49	32.48
Merged-chr6-7738070-3	chr6	7737564	7738564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-44882.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	16.02	19.81	14.8	10.8	13.53	10.45	11.62	10.61	13.74
Merged-chr4-16086756-3	chr4	16086236	16087236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72848.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	20.02	14.75	6.47	26.99	27.06	16.88	22.18	24.76	16.86
Merged-chr5-64795921-3	chr5	64795395	64796395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7628.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	106.97	92.62	49.95	118.08	101.7	103.69	92.94	122.92	94.3
Merged-chr4-133830567-3	chr4	133830106	133831106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	44125.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	58.35	42.39	21.27	56.68	36.85	32.15	22.18	11.5	22.48
Merged-chr10-24638804-1	chr10	24638304	24639304	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	43362.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	78.94	82.48	73.07	105.93	90.04	99.67	81.33	84.9	50.59
Merged-chr16-57390445-3	chr16	57389907	57390907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37130.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	79.52	73.73	97.12	107.28	85.37	114.14	89.78	96.83	76.82
Merged-chr9-123366889-3	chr9	123366391	123367391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348167)	promoter-TSS (NM_001348167)	-36.0	NM_001348167	102436.0	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	37.76	32.72	20.35	45.88	35.45	45.82	44.36	30.51	30.6
Merged-chr9-109054908-3	chr9	109054463	109055463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026381)	promoter-TSS (NM_026381)	97.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	250.56	225.78	196.09	186.22	159.55	161.56	241.87	294.04	173.62
Merged-chr3-157925177-3	chr3	157924690	157925690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145953)	promoter-TSS (NM_145953)	-127.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	6.29	4.15	1.85	8.1	3.73	3.22	4.22	1.77	4.37
Merged-chr12-99523096-3	chr12	99522610	99523610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-40731.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	13.73	7.37	13.87	12.14	3.27	8.04	9.51	8.4	11.24
Merged-chr11-51858391-1	chr11	51857891	51858891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199299)	promoter-TSS (NM_199299)	-761.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	298.04	319.32	306.16	277.31	261.24	293.38	259.82	342.68	202.35
Merged-chr1-89070223-3	chr1	89069709	89070709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-206.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	73.79	78.79	81.4	81.64	85.84	111.73	107.73	100.81	66.82
Merged-chr14-79390744-3	chr14	79390262	79391262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025832)	promoter-TSS (NM_025832)	-94.0	NM_025832	66897.0	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	60.64	76.95	91.57	58.7	70.91	102.08	69.71	75.61	63.7
Merged-chr15-73620865-3	chr15	73620341	73621341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3517.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	140.73	125.33	91.57	128.2	100.77	138.25	153.15	207.38	91.81
Merged-chr16-73756887-2	chr16	73756388	73757388	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	585179.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	1.14	5.07	1.85	4.05	8.4	14.47	5.28	10.17	18.74
Merged-chr10-40128679-3	chr10	40128191	40129191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	13563.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	171.04	125.33	115.62	165.98	97.03	137.45	170.05	137.51	105.55
Merged-chr11-82032807-3	chr11	82032320	82033320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2757.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	19.45	18.89	25.9	20.92	13.06	16.88	31.69	22.99	24.36
Merged-chr1-80785318-3	chr1	80784815	80785815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26762.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	29.17	32.25	32.37	33.74	24.72	36.17	36.97	30.07	30.6
Merged-chr16-11001893-3	chr16	11001392	11002392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7006.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	212.23	157.13	118.39	175.43	137.15	135.84	159.48	167.14	57.46
Merged-chr5-105655685-1	chr5	105655185	105656185	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44284.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	16.59	12.44	11.1	7.42	11.66	12.06	3.17	3.1	5.0
Merged-chr1-152554328-3	chr1	152553832	152554832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346119, exon 6 of 18)	exon (NM_001346119, exon 6 of 18)	70885.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	262.0	209.66	106.37	259.09	187.54	169.6	199.62	208.26	131.78
Merged-chr7-83658850-3	chr7	83658344	83659344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-3349.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	176.19	159.43	106.37	144.39	90.5	117.35	96.11	120.27	91.81
Merged-chr6-31113742-3	chr6	31113226	31114226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-50633.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	348.95	389.36	213.66	368.4	397.0	190.5	344.32	485.94	180.49
Merged-chr11-94677457-3	chr11	94676922	94677922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145828)	promoter-TSS (NM_145828)	71.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	44.05	18.89	36.07	72.19	38.25	55.46	89.78	40.24	26.85
Merged-chr11-115536356-3	chr11	115535852	115536852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133354)	promoter-TSS (NM_133354)	-122.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	226.53	146.07	184.99	201.07	103.1	132.63	235.53	120.27	132.4
Merged-chr4-116221216-3	chr4	116220731	116221731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355584)	promoter-TSS (NM_001355584)	-185.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	129.28	109.67	115.62	130.9	111.03	103.69	172.16	150.34	74.32
Merged-chr15-76660204-3	chr15	76659704	76660704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358912)	promoter-TSS (NM_001358912)	4.0	NM_001276322	54151.0	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	132.14	111.97	86.02	124.82	117.09	121.37	128.85	139.72	56.21
Merged-chr17-21423198-3	chr17	21422691	21423691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-36.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	24.03	23.04	22.2	17.54	19.59	22.51	22.18	26.09	13.74
Merged-chr16-87713137-3	chr16	87712627	87713627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	14173.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	26.31	22.58	16.65	33.06	28.92	32.15	27.46	19.9	11.24
Merged-chr7-3694286-3	chr7	3693794	3694794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029934)	promoter-TSS (NM_029934)	-214.0	NM_024168	66078.0	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	122.99	140.54	150.77	82.32	95.17	106.1	134.14	150.34	105.55
Merged-chr3-9038535-3	chr3	9038029	9039029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23435.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	5.15	8.75	0.0	8.1	7.93	8.04	19.01	11.94	9.99
Merged-chr14-118371500-1	chr14	118371000	118372000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045624, intron 3 of 5)	ORR1E|LTR|ERVL-MaLR	5622.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.57	3.23	0.0	5.4	3.27	1.61	1.06	1.33	2.5
Merged-chr16-11006223-3	chr16	11005680	11006680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2718.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	193.93	171.87	123.94	207.81	141.35	177.64	157.37	183.5	123.03
Merged-chr14-62838565-3	chr14	62838067	62839067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106174)	TTS (NR_106174)	846.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	135.0	146.99	99.89	109.3	95.63	127.0	139.42	169.35	97.43
Merged-chr17-29380705-4	chr17	29380168	29381168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	19754.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	89.81	77.87	72.15	85.69	74.17	104.49	76.05	91.09	53.08
Merged-chr5-115522018-3	chr5	115521524	115522524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	L1M5|LINE|L1	15348.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	66.93	42.85	56.42	76.92	37.79	72.34	97.17	87.99	61.2
Merged-chr9-7222747-3	chr9	7222253	7223253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38248.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	80.09	87.09	61.05	118.08	97.97	108.51	77.1	62.35	56.83
Merged-chr2-152686971-3	chr2	152686483	152687483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-165.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	29.75	17.05	7.4	18.22	20.06	25.72	34.85	31.39	24.36
Merged-chr15-74923617-3	chr15	74923110	74924110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31441.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	121.28	101.37	118.39	56.0	41.99	57.87	144.7	162.28	58.08
Merged-chr13-34076895-3	chr13	34076368	34077368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009450, intron 1 of 3)	intron (NM_009450, intron 1 of 3)	1140.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	64.64	52.99	49.02	74.22	51.78	53.85	52.81	51.29	31.85
Merged-chr14-120911681-3	chr14	120911176	120912176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023579, intron 1 of 25)	CpG	482.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	108.12	96.76	78.62	127.52	125.02	98.87	127.8	94.62	76.82
Merged-chr1-132312899-3	chr1	132312404	132313404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3221.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	49.2	31.79	13.87	36.43	37.79	32.96	24.29	15.03	18.74
Merged-chr14-18234115-3	chr14	18233625	18234625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	4981.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	192.21	261.73	125.79	194.99	204.8	163.97	188.0	300.23	182.99
Merged-chr2-90745391-3	chr2	90744855	90745855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-15.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	387.85	326.7	223.84	365.02	351.28	237.12	333.75	348.43	171.75
Merged-chr8-84218343-3	chr8	84217853	84218853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 11 of 13)	intron (NM_172503, intron 11 of 13)	-9446.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	102.4	96.76	47.17	62.07	53.18	54.66	55.98	61.9	35.6
Merged-chr3-88410082-4	chr3	88409611	88410611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178696)	TTS (NM_178696)	286.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	381.56	397.2	261.76	371.09	406.33	300.62	399.24	424.04	192.98
Merged-chr7-19693620-3	chr7	19693143	19694143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-984.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	75.51	77.41	61.05	105.93	55.51	125.39	136.25	156.97	75.57
Merged-chr16-18498811-3	chr16	18498407	18499407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023120)	promoter-TSS (NM_023120)	36.0	NR_104347	13972.0	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	29.75	38.25	41.62	42.51	40.59	58.68	40.14	51.73	40.59
Merged-chr4-132639002-3	chr4	132638521	132639521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211357)	promoter-TSS (NM_211357)	-25.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	62.93	44.7	54.57	67.47	56.91	94.04	91.89	78.26	48.09
Merged-chr6-89286926-3	chr6	89286441	89287441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	13.73	4.15	3.7	4.72	4.2	3.22	13.73	6.19	0.0
Merged-chr8-105497024-3	chr8	105496516	105497516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175160)	promoter-TSS (NM_175160)	-114.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	25.17	20.27	13.87	26.31	26.12	11.25	14.79	13.71	9.99
Merged-chr18-53899340-3	chr18	53898833	53899833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 2 of 12)	intron (NM_152809, intron 2 of 12)	37220.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	33.18	33.64	41.62	37.78	32.66	24.11	52.81	29.63	27.48
Merged-chr4-16013900-3	chr4	16013405	16014405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145950)	promoter-TSS (NM_145950)	-17.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	121.28	115.66	86.95	155.86	193.13	137.45	137.3	119.83	65.58
Merged-chr5-28004602-3	chr5	28004109	28005109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66803.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	13.16	18.43	11.1	22.94	27.52	16.08	23.24	16.36	9.99
Merged-chr7-116494898-3	chr7	116494374	116495374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9495.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	54.92	50.23	49.02	53.98	69.98	98.87	67.6	48.64	61.2
Merged-chr4-116708461-3	chr4	116707968	116708968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	-83.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	55.49	34.1	29.6	56.0	35.92	50.64	58.09	57.48	28.1
Merged-chr4-155249397-3	chr4	155248875	155249875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	-591.0	NM_001190445	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	37.18	54.83	54.57	40.48	36.85	54.66	48.58	49.96	31.23
Merged-chr10-25331502-1	chr10	25331002	25332002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28296.0	NM_001358754	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	101.83	129.94	85.1	124.82	120.36	69.93	116.18	109.66	57.46
Merged-chr12-73680435-3	chr12	73679926	73680926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	95630.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	62.35	79.72	37.0	93.11	84.9	54.66	95.06	81.36	44.97
Merged-chr19-5930394-3	chr19	5929891	5930891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5575.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	394.14	311.03	203.49	339.38	245.38	192.91	255.6	309.96	121.78
Merged-chr5-140648686-2	chr5	140648171	140649171	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	CpG	360.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	141.3	92.16	117.47	129.55	100.3	119.76	173.21	143.26	76.19
Merged-chr2-79634747-2	chr2	79634248	79635248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080558)	promoter-TSS (NM_080558)	-677.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	53.77	94.46	78.62	80.97	82.11	79.58	57.03	70.3	36.22
Merged-chr6-116668887-1	chr6	116668387	116669387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4949.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	148.73	86.17	73.07	146.41	54.58	63.5	113.01	110.1	69.32
Merged-chr1-151595086-3	chr1	151594597	151595597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	23724.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	107.55	113.35	87.87	138.99	122.23	122.98	111.96	143.7	92.43
Merged-chr2-181864337-3	chr2	181863838	181864838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025901)	promoter-TSS (NM_025901)	-22.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	46.91	46.54	32.37	48.58	47.58	41.8	49.64	47.31	24.98
Merged-chr9-44361727-3	chr9	44361266	44362266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357393)	promoter-TSS (NM_001357393)	-96.0	NM_027889	71732.0	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	191.07	180.17	91.57	188.25	222.52	172.81	192.23	200.3	77.44
Merged-chr5-105700634-3	chr5	105700136	105701136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-174.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	292.32	223.94	194.24	326.56	247.25	197.73	226.02	193.67	132.4
Merged-chrUn_JH584304-44254-1	chrUn_JH584304	43754	44754	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15435.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	79.21	60.13	0.0
Merged-chr10-77971352-3	chr10	77970867	77971867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1495.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	120.7	99.99	99.89	156.53	76.04	135.04	154.2	152.55	108.04
Merged-chr2-35979838-3	chr2	35979335	35980335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029774)	promoter-TSS (NM_029774)	-211.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	119.56	53.91	63.82	133.59	75.57	42.6	113.01	37.14	32.48
Merged-chr14-69707533-3	chr14	69707009	69708009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301652)	promoter-TSS (NM_001301652)	-16.0	NM_001301652	71843.0	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	14.87	15.67	14.8	17.54	10.26	19.29	7.39	14.59	8.74
Merged-chr15-11399792-3	chr15	11399282	11400282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-124.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	61.78	96.76	38.85	62.07	63.45	85.2	91.89	46.87	24.36
Merged-chr7-49190829-1	chr7	49190329	49191329	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-28671.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.57	2.3	0.0	2.02	5.13	1.61	2.11	2.65	0.0
Merged-chr5-147060181-2	chr5	147059680	147060680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	16392.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	192.78	189.38	130.42	167.33	150.68	115.75	16.9	5.75	10.62
Merged-chr18-65430822-3	chr18	65430293	65431293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172833)	promoter-TSS (NM_172833)	-204.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	162.46	150.22	116.54	187.57	145.08	94.85	175.33	164.93	78.69
Merged-chr11-96944061-3	chr11	96943567	96944567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003293)	promoter-TSS (NR_003293)	-48.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	149.88	113.81	96.2	114.03	120.36	70.73	118.29	127.34	64.33
Merged-chr3-109251976-3	chr3	109251488	109252488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88695.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	29.75	42.39	46.25	33.74	37.32	25.72	48.58	38.03	36.85
Merged-chr6-122650755-3	chr6	122650253	122651253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24329.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	169.9	162.2	122.09	165.98	142.29	159.15	177.44	202.95	119.28
Merged-chr12-4082816-3	chr12	4082267	4083267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153082, exon 1 of 7)	5' UTR (NM_153082, exon 1 of 7)	193.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	108.69	140.08	80.47	160.58	155.35	128.61	147.87	147.68	94.93
Merged-chr14-51063501-3	chr14	51062995	51063995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6253.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	157.31	184.31	98.97	114.7	123.62	119.76	118.29	134.86	75.57
Merged-chr17-15499825-3	chr17	15499325	15500325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013684)	promoter-TSS (NM_013684)	-63.0	NM_013684	21374.0	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	108.69	103.68	111.92	62.75	64.84	109.32	122.52	133.98	65.58
Merged-chr2-164868655-3	chr2	164868164	164869164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10704.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	76.08	53.91	78.62	70.17	36.39	49.83	66.54	80.92	68.7
Merged-chr10-78440147-3	chr10	78439666	78440666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172134, exon 11 of 11)	3' UTR (NM_172134, exon 11 of 11)	4991.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	30.89	58.98	55.5	34.41	41.05	32.96	51.75	62.35	42.47
Merged-chr7-12921841-3	chr7	12921341	12922341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009095)	promoter-TSS (NM_009095)	-470.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	125.28	177.4	150.77	140.34	120.36	171.21	217.57	202.51	146.14
Merged-chr6-32718092-3	chr6	32717591	32718591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129899.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	7.44	6.91	1.85	9.45	1.87	4.82	10.56	3.98	8.74
Merged-chr7-126799271-3	chr7	126798769	126799769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-15.0	NM_007438	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	414.17	329.92	238.64	350.85	253.31	245.96	246.09	282.99	218.58
Merged-chr11-57644549-3	chr11	57644071	57645071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-871.0	NM_134189	171212.0	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	28.03	36.86	44.4	51.28	52.25	57.87	35.91	35.82	29.35
Merged-chr11-88291480-1	chr11	88290980	88291980	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2563.0	NM_028859	74297.0	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	3.43	4.15	2.77	7.42	3.73	12.86	1.06	2.65	2.5
Merged-chr11-69070821-3	chr11	69070312	69071312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025838)	promoter-TSS (NM_025838)	3.0	NM_028336	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	51.48	48.84	46.25	58.03	59.71	45.01	65.48	68.09	40.59
Merged-chr6-124493045-3	chr6	124492489	124493489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181344)	promoter-TSS (NM_181344)	-124.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	44.62	18.43	34.22	42.51	21.93	22.51	46.47	32.72	23.11
Merged-chr2-66192002-3	chr2	66191511	66192511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	64606.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	113.27	133.63	74.92	114.7	130.62	77.16	73.93	118.5	29.35
Merged-chr6-136659453-3	chr6	136658954	136659954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	2439.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	110.98	101.37	83.25	60.05	54.58	44.21	188.0	189.25	63.7
Merged-chr1-162004259-1	chr1	162003759	162004759	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-710.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	17.16	10.14	5.55	6.75	4.2	10.45	45.42	45.1	33.72
Merged-chr1-180957266-3	chr1	180956761	180957761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 8 of 22)	MTD|LTR|ERVL-MaLR	14743.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	77.23	58.52	53.65	68.15	39.19	34.56	61.26	67.21	46.22
Merged-chr5-66004998-3	chr5	66004481	66005481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027961)	promoter-TSS (NR_027961)	-696.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	12.59	12.44	20.35	22.94	12.6	9.65	11.62	15.92	13.12
Merged-chr11-69579394-3	chr11	69578892	69579892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144824)	promoter-TSS (NM_144824)	-68.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	56.06	50.69	37.0	62.75	37.79	53.85	85.55	85.78	38.1
Merged-chr9-109038586-3	chr9	109038073	109039073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284332)	promoter-TSS (NM_001284332)	6.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	55.49	35.02	50.87	62.07	46.65	40.99	60.2	57.48	33.1
Merged-chr4-89524825-3	chr4	89524332	89525332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163366.0	NM_175647	242523.0	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	5.15	4.15	1.85	5.4	4.67	8.04	4.22	2.65	2.5
Merged-chr3-133544330-3	chr3	133543823	133544823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	67.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	407.87	305.04	250.66	354.9	263.11	228.28	353.82	256.46	216.09
Merged-chr3-116615876-3	chr3	116615378	116616378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289568, intron 9 of 17)	ORR1E|LTR|ERVL-MaLR	-1291.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	36.04	32.25	21.27	30.36	21.93	16.88	19.01	17.24	26.23
Merged-chr10-78457986-3	chr10	78457508	78458508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	6940.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	121.85	84.78	91.57	99.86	73.24	77.97	102.45	82.24	27.48
Merged-chr8-84249713-3	chr8	84249162	84250162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007571)	promoter-TSS (NM_001007571)	99.0	NM_001007571	101966.0	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	259.71	237.76	138.74	250.99	217.39	156.74	178.5	205.17	98.68
Merged-chr10-61199778-3	chr10	61199262	61200262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 21 of 21)	intron (NM_001081127, intron 21 of 21)	24500.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	40.62	17.51	3.7	22.94	18.19	4.02	23.24	19.01	6.87
Merged-chr19-6877039-1	chr19	6876539	6877539	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	-18828.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	2.29	2.76	1.85	4.05	3.27	5.63	16.9	10.17	21.23
Merged-chr1-155062201-3	chr1	155061685	155062685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21079.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	10.87	13.82	11.1	8.77	9.33	8.04	7.39	5.75	9.99
Merged-chr7-130903910-3	chr7	130903427	130904427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-4341.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	109.83	108.75	69.37	144.39	158.61	102.08	104.56	109.22	48.09
Merged-chr12-80114526-3	chr12	80114017	80115017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1504.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	228.25	249.28	180.37	221.31	132.49	140.66	243.98	239.65	147.39
Merged-chr11-67052649-3	chr11	67052149	67053149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025510)	promoter-TSS (NM_025510)	-21.0	NM_001040026	52892.0	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	55.49	51.15	49.02	58.03	48.05	66.71	50.7	50.41	23.73
Merged-chrX-73787039-3	chrX	73786543	73787543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166480)	promoter-TSS (NM_001166480)	20.0	NM_009279	20832.0	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|SSR-delta|TRAP-delta|Trap	signal sequence receptor, delta	protein-coding	199.07	174.18	129.49	149.79	141.35	147.09	170.05	167.58	80.56
Merged-chr2-84799340-3	chr2	84798828	84799828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019949, intron 1 of 3)	intron (NM_019949, intron 1 of 3)	500.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	167.04	154.82	151.69	165.98	131.56	139.86	199.62	207.82	132.4
Merged-chr16-30388853-3	chr16	30388364	30389364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-334.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	414.17	340.98	279.34	357.6	244.45	259.62	358.05	330.74	193.6
Merged-chr11-17953513-2	chr11	17953003	17954003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131916)	promoter-TSS (NR_131916)	372.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	56.06	65.43	57.35	50.6	70.44	89.22	66.54	53.94	38.1
Merged-chr17-35813878-1	chr17	35813378	35814378	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7835.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	86.95	57.6	54.57	92.44	55.51	77.97	87.66	91.53	63.7
Merged-chr16-39101982-1	chr16	39101482	39102482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86968.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	1.14	2.3	1.85	6.07	4.2	16.88	0.0	1.77	4.37
Merged-chr7-38019518-3	chr7	38019030	38020030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011274)	promoter-TSS (NM_011274)	22.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	247.13	220.72	213.66	207.81	281.3	220.24	227.08	141.49	128.03
Merged-chr17-21909689-3	chr17	21909189	21910189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001256493, exon 1 of 5)	5' UTR (NM_001256493, exon 1 of 5)	237.0	NM_001256493	70081.0	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	17.16	25.8	23.12	14.17	22.86	21.7	23.24	16.8	21.86
Merged-chr15-50697913-3	chr15	50697408	50698408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191141.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	73.79	56.22	36.07	106.61	61.58	36.17	59.15	53.94	28.73
Merged-chr17-45506995-3	chr17	45506477	45507477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198608, exon 1 of 22)	exon (NM_198608, exon 1 of 22)	136.0	NM_198608	224805.0	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	46.34	79.72	53.65	84.34	55.51	67.52	91.89	67.21	45.59
Merged-chr9-23670821-3	chr9	23670320	23671320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427198.0	NM_175678	319239.0	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	12.59	16.59	11.1	17.54	13.06	24.11	12.67	10.17	11.24
Merged-chr9-62811861-3	chr9	62811324	62812324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010193)	promoter-TSS (NM_010193)	-176.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	332.94	294.44	256.21	323.19	302.3	246.76	269.33	256.9	155.51
Merged-chr5-144965206-3	chr5	144964689	144965689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	641.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	32.04	20.27	41.62	27.66	14.46	36.17	40.14	18.13	18.11
Merged-chr6-31108992-3	chr6	31108503	31109503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-45910.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	145.3	155.28	102.67	209.84	165.14	117.35	200.68	229.04	95.55
Merged-chr9-21546618-3	chr9	21546124	21547124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-270.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	85.81	75.57	103.59	92.44	69.04	63.5	92.94	87.55	65.58
Merged-chrX-99136019-3	chrX	99135531	99136531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010110)	promoter-TSS (NM_010110)	-30.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	17.16	20.27	33.3	33.06	23.79	29.74	23.24	28.74	24.36
Merged-chr8-104384202-3	chr8	104383710	104384710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	11597.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	112.12	153.44	115.62	88.39	120.36	109.32	119.35	115.41	79.32
Merged-chr6-135007841-3	chr6	135007347	135008347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3765.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	59.49	57.14	51.8	107.95	99.37	62.7	66.54	69.42	31.23
Merged-chr8-56439623-3	chr8	56439128	56440128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45340.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	16.02	12.44	21.27	15.52	11.2	7.23	10.56	12.38	15.61
Merged-chr3-95635768-3	chr3	95635268	95636268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10788.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	139.58	109.67	92.5	151.81	94.7	134.23	127.8	165.81	77.44
Merged-chr11-85003681-3	chr11	85003159	85004159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 29 of 33)	intron (NM_001029934, intron 29 of 33)	45905.0	NM_007607	12351.0	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	32.61	34.1	20.35	28.34	25.66	25.72	25.35	26.09	26.23
Merged-chr3-81932652-3	chr3	81932157	81933157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177662)	promoter-TSS (NM_177662)	56.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	160.18	206.89	121.17	179.47	219.73	165.58	209.12	248.94	113.04
Merged-chr16-5256026-3	chr16	5255518	5256518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027446)	promoter-TSS (NM_027446)	-62.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	65.21	79.72	100.82	126.17	113.83	103.69	118.29	102.58	56.83
Merged-chr11-59541518-3	chr11	59541016	59542016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359638)	promoter-TSS (NM_001359638)	-53.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	243.12	214.73	139.67	319.82	278.04	254.0	222.86	273.26	129.9
Merged-chr2-28533314-3	chr2	28532800	28533800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145835)	promoter-TSS (NM_001145835)	-164.0	NM_001145835	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	117.27	33.18	44.4	88.39	35.45	16.08	66.54	32.28	8.74
Merged-chr17-57228216-3	chr17	57227691	57228691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009778)	promoter-TSS (NM_009778)	-55.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	22.88	9.68	3.7	14.17	12.6	9.65	35.91	14.59	6.25
Merged-chr2-46366039-3	chr2	46365531	46366531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	669426.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	70.93	69.58	80.47	105.93	71.84	84.4	109.84	77.82	66.82
Merged-chr9-106429443-3	chr9	106428954	106429954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	43.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	249.99	225.32	163.72	187.57	194.53	146.29	198.56	231.7	157.38
Merged-chr2-121355376-3	chr2	121354841	121355841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2435.0	NM_001355069	12716.0	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|U-MtCK|UbCKmit|mi-CK|mia-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	24.03	15.21	7.4	38.46	13.06	31.35	27.46	11.05	21.86
Merged-chr12-4817497-3	chr12	4816990	4817990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025323)	promoter-TSS (NM_025323)	-118.0	NM_025323	66055.0	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	55.49	102.29	106.37	65.45	96.57	96.45	96.11	95.07	68.07
Merged-chr1-88635794-3	chr1	88635278	88636278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66413.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	48.05	38.71	32.37	53.3	30.32	42.6	68.65	48.2	30.6
Merged-chr10-40372516-3	chr10	40372016	40373016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	23208.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	15.45	10.6	5.55	15.52	17.73	12.86	9.51	3.54	9.99
Merged-chr1-183623505-3	chr1	183623012	183624012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-125465.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	46.34	55.29	26.82	56.0	44.78	37.78	159.48	167.14	59.33
Merged-chr17-45750137-1	chr17	45749637	45750637	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	15631.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	5.15	0.92	5.55	2.7	1.4	1.61	1.06	0.44	1.25
Merged-chr10-122739298-3	chr10	122738809	122739809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	59994.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	48.62	32.72	28.67	32.39	19.59	40.19	69.71	50.41	43.09
Merged-chr11-106957577-3	chr11	106957076	106958076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36861.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	22.88	22.58	23.12	24.29	20.99	41.8	17.96	9.73	17.49
Merged-chr7-144582476-3	chr7	144581975	144582975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010175)	promoter-TSS (NM_010175)	-39.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	81.23	76.95	151.69	96.48	103.56	121.37	104.56	102.14	75.57
Merged-chr4-117190069-3	chr4	117189614	117190614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7490.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	220.81	291.22	103.59	205.11	268.24	147.09	221.8	317.92	121.78
Merged-chr5-142440696-3	chr5	142440191	142441191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-23240.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	23.45	23.5	32.37	45.21	35.45	67.52	29.57	22.11	27.48
Merged-chr15-99393403-3	chr15	99392938	99393938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171035, intron 1 of 9)	CpG	219.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	563.47	536.35	368.13	491.87	406.33	351.26	467.89	575.26	339.74
Merged-chr2-167335276-3	chr2	167334769	167335769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13909.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	110.41	86.63	72.15	137.64	113.36	148.7	103.51	125.58	64.95
Merged-chr1-156035722-1	chr1	156035222	156036222	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160019)	promoter-TSS (NM_001160019)	-5.0	NM_001160180	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	378.7	346.05	215.51	317.12	280.84	223.45	292.56	284.31	189.23
Merged-chr14-29960380-3	chr14	29959875	29960875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	-8005.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	18.88	11.06	11.1	12.82	7.0	26.53	9.51	8.84	5.0
Merged-chr8-71559098-3	chr8	71558600	71559600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100462)	promoter-TSS (NM_001100462)	-229.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	46.34	33.64	32.37	24.96	24.72	24.11	22.18	21.67	18.74
Merged-chr8-34918621-3	chr8	34918108	34919108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 2 of 26)	intron (NM_175091, intron 2 of 26)	47082.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	22.31	20.27	11.1	33.74	42.45	22.51	15.84	5.31	11.24
Merged-chr13-119310193-3	chr13	119309702	119310702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98809.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	17.16	27.19	24.97	22.94	30.32	45.01	35.91	30.07	23.73
Merged-chr14-20478955-3	chr14	20478452	20479452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110794, intron 1 of 12)	intron (NM_001110794, intron 1 of 12)	1181.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	50.34	42.39	29.6	37.11	39.19	47.42	34.85	38.47	16.86
Merged-chr3-108997488-3	chr3	108996978	108997978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 2 of 10)	intron (NM_001163567, intron 2 of 10)	30129.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	45.19	61.75	48.1	41.16	26.59	36.17	33.8	41.12	48.71
Merged-chr1-57406666-3	chr1	57406142	57407142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302963)	promoter-TSS (NM_001302963)	32.0	NM_001302962	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	208.8	235.0	140.59	166.66	190.8	150.31	264.05	245.4	134.27
Merged-chr11-100609047-3	chr11	100608542	100609542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	MTD|LTR|ERVL-MaLR	11126.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	190.49	208.27	100.82	149.79	125.96	118.96	205.96	192.34	106.79
Merged-chr10-117285146-3	chr10	117284659	117285659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2887.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	48.62	32.25	38.85	40.48	22.86	41.8	43.3	40.68	38.72
Merged-chr10-62541707-3	chr10	62541141	62542141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14196.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	44.05	26.73	27.75	57.35	16.79	37.78	40.14	18.57	12.49
Merged-chr18-20887023-1	chr18	20886523	20887523	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	9055.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	108.69	148.37	149.84	96.48	118.49	90.83	103.51	121.6	97.43
Merged-chr13-98956465-3	chr13	98955985	98956985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	28080.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	46.91	43.77	42.55	50.6	54.58	42.6	90.83	108.33	41.84
Merged-chr15-78862511-3	chr15	78861999	78862999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-6970.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	89.24	67.27	89.72	104.58	68.11	122.98	104.56	102.58	83.69
Merged-chr2-180024879-3	chr2	180024453	180025453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177727)	promoter-TSS (NM_177727)	-34.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	43.48	30.87	37.92	53.3	31.72	61.09	53.87	33.16	28.73
Merged-chr8-123318600-3	chr8	123318093	123319093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016925)	promoter-TSS (NM_016925)	-17.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	10.3	13.82	6.47	10.8	10.26	13.66	12.67	16.8	8.74
Merged-chr8-53639036-3	chr8	53638541	53639541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146208)	promoter-TSS (NM_146208)	24.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	1.14	3.23	5.55	7.42	3.73	6.43	6.34	7.07	9.37
Merged-chrX-41911949-3	chrX	41911436	41912436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033422)	promoter-TSS (NM_001033422)	-35.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	129.28	133.63	114.69	115.38	112.9	110.92	128.85	107.89	84.31
Merged-chr4-139233150-3	chr4	139232675	139233675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	39064.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	184.77	127.18	88.8	215.91	118.96	108.51	129.91	155.64	68.07
Merged-chr4-129600701-3	chr4	129600217	129601217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029748)	promoter-TSS (NM_029748)	10.0	NM_029748	76799.0	Mm.293096	NM_029748	ENSMUSG00000028797	Tmem234	1500002D11Rik|2510006D16Rik|4933407D05Rik	transmembrane protein 234	protein-coding	83.52	99.53	101.74	56.0	71.84	73.14	87.66	62.79	53.71
Merged-chr13-41605324-1	chr13	41604824	41605824	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163572)	promoter-TSS (NM_001163572)	-892.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	283.74	345.59	213.66	291.48	222.99	257.21	293.62	340.03	204.85
Merged-chr6-81965869-3	chr6	81965336	81966336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026490, exon 1 of 5)	exon (NM_026490, exon 1 of 5)	113.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	23.45	15.67	7.4	19.57	22.86	15.27	17.96	18.57	9.99
Merged-chr19-5406832-1	chr19	5406332	5407332	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015545)	promoter-TSS (NR_015545)	17.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	10.3	4.15	6.47	8.1	8.4	8.04	355.93	475.33	216.71
Merged-chr2-31062392-3	chr2	31061869	31062869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	34131.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	49.2	43.77	25.9	62.75	43.39	66.71	67.6	40.24	37.47
Merged-chr7-63911047-3	chr7	63910558	63911558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-5799.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	200.79	140.54	93.42	207.81	119.89	140.66	146.81	162.28	100.55
Merged-chr19-32187007-1	chr19	32186507	32187507	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	24006.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	52.06	46.54	14.8	70.17	63.45	48.23	20.07	19.9	17.49
Merged-chr7-39517922-3	chr7	39517401	39518401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	CpG	135.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	284.88	285.69	176.67	232.1	255.18	188.89	259.82	328.97	156.13
Merged-chr15-63611340-3	chr15	63610832	63611832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131724.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	64.64	64.05	63.82	60.05	66.24	44.21	68.65	86.22	26.85
Merged-chr10-24638136-3	chr10	24637626	24638626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42684.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	94.39	111.97	66.6	81.64	86.77	113.33	98.23	115.41	72.45
Merged-chr4-150237136-3	chr4	150236659	150237659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025388).2	promoter-TSS (NM_001025388).2	-38.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	227.68	236.38	197.02	246.95	234.65	277.31	252.43	252.48	141.14
Merged-chr8-46886360-3	chr8	46885861	46886861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100526.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	124.71	84.32	84.17	122.12	56.45	81.18	123.57	106.56	71.82
Merged-chr8-81342448-3	chr8	81341940	81342940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-122.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	100.68	80.18	91.57	77.59	66.24	63.5	11.62	8.4	14.99
Merged-chr7-128333110-3	chr7	128332603	128333603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34972.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	41.19	28.57	27.75	48.58	27.52	38.58	36.97	37.14	35.6
Merged-chr6-58640544-3	chr6	58640062	58641062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	CpG	43890.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	14.87	9.68	10.17	22.27	12.13	5.63	13.73	7.07	4.37
Merged-chr7-102234117-1	chr7	102233617	102234617	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	11089.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	34.32	35.94	22.2	34.41	13.06	40.19	23.24	30.51	29.98
Merged-chr5-139200568-3	chr5	139200093	139201093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-44.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	117.84	93.54	82.32	157.88	97.03	102.08	127.8	80.03	67.45
Merged-chr13-114855987-1	chr13	114855487	114856487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008396, intron 20 of 29)	intron (NM_008396, intron 20 of 29)	37750.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	12.59	17.05	10.17	3.37	0.47	0.0	4.22	2.65	1.25
Merged-chr15-98513043-3	chr15	98512535	98513535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6799.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	140.73	167.26	95.27	147.76	132.49	126.19	168.99	207.38	89.31
Merged-chr13-19395330-3	chr13	19394841	19395841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	472.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	201.36	313.33	276.56	216.58	220.66	233.1	253.48	207.38	158.63
Merged-chr5-124050237-3	chr5	124049738	124050738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17978.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	173.9	182.01	180.37	203.09	187.07	227.47	245.04	258.23	153.01
Merged-chr4-142017897-3	chr4	142017389	142018389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131014)	promoter-TSS (NR_131014)	-9.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	145.3	121.65	79.55	189.6	145.55	135.04	164.76	174.66	93.05
Merged-chr11-87462543-3	chr11	87462045	87463045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	34954.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	81.23	79.25	54.57	103.91	86.77	61.09	74.99	59.25	31.23
Merged-chr10-130318940-3	chr10	130318429	130319429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3923.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	6.29	7.37	1.85	4.72	3.27	3.22	5.28	2.21	0.0
Merged-chr18-66438000-3	chr18	66437510	66438510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20594.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	66.36	66.81	49.02	64.77	62.98	35.37	80.27	104.35	46.22
Merged-chr1-152798298-3	chr1	152797800	152798800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1853.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	201.93	240.99	155.39	216.58	173.07	175.23	200.68	256.9	131.15
Merged-chr10-62509409-3	chr10	62508927	62509927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 1 of 3)	MTE2a|LTR|ERVL-MaLR	-1670.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	218.52	216.57	116.54	192.97	151.62	165.58	140.47	156.97	81.19
Merged-chr13-95375344-3	chr13	95374884	95375884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025630)	promoter-TSS (NM_025630)	-27.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	154.45	104.14	79.55	100.53	102.63	104.49	161.6	99.05	82.44
Merged-chr8-61224068-3	chr8	61223562	61224562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021506)	promoter-TSS (NM_021506)	-109.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	2.29	3.23	3.7	19.57	11.66	22.51	5.28	6.63	16.24
Merged-chr7-28383107-3	chr7	28382643	28383643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3915.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	478.24	366.78	224.76	430.47	298.1	224.26	372.83	460.3	224.21
Merged-chr10-43479668-1	chr10	43479168	43480168	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199028, intron 1 of 3)	CpG	528.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	137.86	85.25	110.99	152.49	119.43	101.28	170.05	96.39	74.94
Merged-chrX-164978739-3	chrX	164978248	164979248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	MIR3|SINE|MIR	1627.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	163.04	176.02	89.72	165.98	144.62	98.87	166.88	167.58	80.56
Merged-chr8-85502629-3	chr8	85502126	85503126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	10009.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	97.82	77.87	66.6	50.6	43.85	34.56	66.54	49.52	32.48
Merged-chr6-108197317-3	chr6	108196834	108197834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11751.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	21.74	13.82	11.1	18.22	7.0	11.25	25.35	16.36	8.12
Merged-chr10-67595445-3	chr10	67594950	67595950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23491.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	136.15	165.42	109.14	182.85	167.94	134.23	172.16	189.25	93.05
Merged-chr6-21950008-3	chr6	21949517	21950517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 1 of 11)	CpG	402.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	391.28	396.74	224.76	433.84	369.47	217.83	356.99	355.94	154.26
Merged-chr1-136131217-3	chr1	136130726	136131726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	-43.0	NR_046167	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	96.68	76.49	83.25	82.99	100.77	73.14	104.56	109.66	58.08
Merged-chr13-9454899-3	chr13	9454369	9455369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178344.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	102.97	98.15	64.75	143.04	84.44	71.54	91.89	117.17	58.08
Merged-chr9-21411833-3	chr9	21411395	21412395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021888)	promoter-TSS (NM_021888)	58.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	19.45	19.81	15.72	30.36	34.99	45.01	30.63	26.97	11.24
Merged-chr5-123713980-3	chr5	123713472	123714472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027494, intron 5 of 13)	intron (NM_027494, intron 5 of 13)	7072.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	58.92	50.23	38.85	81.64	68.58	53.85	114.07	117.17	71.2
Merged-chr2-43921612-1	chr2	43921112	43922112	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	143712.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	6.29	3.69	3.7	3.37	8.4	3.22	3.17	3.54	7.49
Merged-chr9-120127673-3	chr9	120127164	120128164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011029)	promoter-TSS (NM_011029)	-102.0	NM_011029	16785.0	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	265.43	288.45	283.96	244.92	211.33	262.04	213.35	264.42	211.71
Merged-chr11-32647438-3	chr11	32646949	32647949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	4894.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	24.03	25.8	17.57	24.29	15.86	25.72	32.74	24.76	33.72
Merged-chr9-63109484-3	chr9	63108983	63109983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37497.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	98.97	78.33	84.17	78.27	79.31	79.58	85.55	70.75	66.2
Merged-chr3-51709384-3	chr3	51708900	51709900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	RMER15|LTR|ERVL	48221.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	173.9	181.09	187.77	147.76	143.68	135.04	142.59	165.37	71.2
Merged-chr8-26698744-3	chr8	26698226	26699226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125697.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	102.4	117.04	77.7	106.61	90.04	88.42	165.82	175.1	93.68
Merged-chr14-45239216-3	chr14	45238720	45239720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	19503.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	10.3	5.53	1.85	8.1	4.67	4.02	12.67	3.98	11.24
Merged-chrX-136741498-3	chrX	136741009	136742009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019768)	promoter-TSS (NM_019768)	100.0	NM_019768	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	110.98	99.99	74.92	105.26	91.44	65.91	92.94	115.85	60.58
Merged-chr14-14013218-4	chr14	14012763	14013763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139227, exon 2 of 12)	exon (NM_139227, exon 2 of 12)	772.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	215.66	178.32	164.64	199.72	93.77	118.96	166.88	71.19	86.18
Merged-chr7-31110977-1	chr7	31110477	31111477	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	20.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	219.1	174.18	71.22	223.33	132.95	55.46	224.97	188.36	69.95
Merged-chr5-90881882-3	chr5	90881389	90882389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9356.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	183.06	86.17	82.32	240.2	111.5	105.3	73.93	31.84	38.72
Merged-chr2-169928777-5	chr2	169928278	169929278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34409.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	170.47	125.33	95.27	149.79	72.78	94.85	185.89	171.12	99.92
Merged-chr5-145204426-3	chr5	145203902	145204902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167944)	promoter-TSS (NM_001167944)	-157.0	NM_001359187	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	127.57	142.84	96.2	119.43	118.96	86.81	177.44	147.68	93.05
Merged-chr1-128590976-3	chr1	128590538	128591538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356509, intron 1 of 1)	CpG	1261.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	76.66	99.07	18.5	112.68	133.89	117.35	20.07	18.57	21.23
Merged-chr7-4504875-3	chr7	4504340	4505340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360154, intron 12 of 12)	intron (NM_001360154, intron 12 of 12)	-3160.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	108.12	129.02	124.87	99.86	79.31	122.98	132.02	130.0	108.67
Merged-chr4-53126946-3	chr4	53126434	53127434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	32961.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	109.83	104.6	83.25	113.35	92.37	99.67	124.63	92.86	79.32
Merged-chr1-106627439-3	chr1	106626930	106627930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-80799.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	33.75	29.95	5.55	39.13	19.59	45.01	32.74	25.65	11.24
Merged-chr1-191224960-3	chr1	191224465	191225465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151547, intron 1 of 1)	intron (NR_151547, intron 1 of 1)	511.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	548.6	339.6	197.02	555.97	323.29	272.48	341.15	465.16	154.26
Merged-chrUn_JH584304-55469-1	chrUn_JH584304	54969	55969	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 4 of 7)	non-coding (NR_003518, exon 4 of 7)	4220.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	40.14	33.16	0.0
Merged-chr12-21208411-2	chr12	21207935	21208935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 7 of 26)	intron (NM_001004364, intron 7 of 26)	77849.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	8.58	4.15	6.47	10.8	5.13	4.82	6.34	1.77	1.25
Merged-chr15-97576880-3	chr15	97576329	97577329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128993.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	68.07	70.04	50.87	97.16	111.5	101.28	71.82	73.4	43.09
Merged-chr2-160250480-3	chr2	160249991	160250991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77003.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	61.21	51.61	37.92	56.0	37.79	65.11	86.61	74.28	33.1
Merged-chr3-89213977-3	chr3	89213473	89214473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013604, exon 1 of 8)	exon (NM_013604, exon 1 of 8)	362.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	455.93	346.05	127.64	400.11	289.24	186.48	238.7	202.95	119.91
Merged-chr17-87255860-3	chr17	87255360	87256360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139295, exon 4 of 4)	3' UTR (NM_139295, exon 4 of 4)	10087.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	153.88	144.69	96.2	192.97	155.81	122.98	85.55	98.6	72.45
Merged-chr11-71004497-3	chr11	71003966	71004966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178367)	promoter-TSS (NM_178367)	-34.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	53.2	49.76	44.4	41.16	51.78	71.54	50.7	65.44	33.1
Merged-chr13-45903778-3	chr13	45903295	45904295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	61196.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	63.5	96.3	64.75	84.34	58.31	59.48	78.16	67.65	73.07
Merged-chr3-146592878-3	chr3	146592388	146593388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019957, intron 3 of 6)	intron (NM_019957, intron 3 of 6)	-4261.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	13.16	11.06	11.1	32.39	10.73	24.11	17.96	10.17	14.99
Merged-chr7-143600134-3	chr7	143599600	143600600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013742)	promoter-TSS (NM_013742)	-10.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	36.61	40.09	40.7	36.43	28.92	51.44	42.25	41.56	20.61
Merged-chr6-124904250-3	chr6	124903742	124904742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008479)	TTS (NM_008479)	7463.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	173.9	77.87	71.22	127.52	82.11	110.92	117.24	109.66	59.95
Merged-chr5-114667640-3	chr5	114667102	114668102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9181.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	71.51	48.38	37.92	60.05	54.58	43.4	47.53	46.43	31.85
Merged-chr15-31453670-3	chr15	31453165	31454165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145852)	promoter-TSS (NM_145852)	24.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	102.4	108.75	86.95	140.34	161.41	131.82	164.76	161.83	91.81
Merged-chr6-88075255-3	chr6	88074769	88075769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9204.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	104.69	91.7	67.52	66.8	74.64	86.01	110.9	84.9	59.33
Merged-chr1-75236468-3	chr1	75235978	75236978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159885)	promoter-TSS (NM_001159885)	55.0	NM_178055	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	176.76	174.64	87.87	194.99	202.93	145.49	165.82	148.57	94.93
Merged-chr7-25649934-3	chr7	25649421	25650421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	8840.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	30.89	24.42	26.82	34.41	28.92	68.32	32.74	31.84	14.99
Merged-chr2-152398911-3	chr2	152398416	152399416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	-870.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	14.87	16.59	16.65	14.17	13.53	10.45	15.84	18.13	8.74
Merged-chr3-87906181-3	chr3	87905695	87906695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-126.0	NM_008231	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	152.74	104.14	114.69	165.98	116.16	100.47	162.65	90.2	85.56
Merged-chr6-71271559-3	chr6	71271050	71272050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145568)	promoter-TSS (NM_145568)	-121.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	360.97	358.49	263.61	294.85	309.3	232.29	340.09	371.42	234.2
Merged-chr14-57746121-3	chr14	57745614	57746614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015771)	promoter-TSS (NM_015771)	9.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	298.04	280.16	210.89	271.24	263.11	217.83	316.86	220.2	167.37
Merged-chr6-51558529-3	chr6	51558035	51559035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	13242.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	84.66	75.57	53.65	74.22	58.31	65.11	68.65	78.71	49.96
Merged-chr18-36700599-3	chr18	36700114	36701114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21-int|LTR|ERVL	-4689.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	48.05	53.91	28.67	71.52	56.45	65.11	48.58	40.68	49.96
Merged-chr2-93599944-3	chr2	93599451	93600451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42483.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	105.83	70.96	112.84	96.48	94.23	116.55	140.47	140.17	73.69
Merged-chr11-118454029-3	chr11	118453537	118454537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045902, intron 1 of 2)	L1MB8|LINE|L1	958.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	109.26	135.47	41.62	224.01	188.0	169.6	156.32	197.21	111.17
Merged-chr12-70825365-3	chr12	70824820	70825820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028127)	promoter-TSS (NM_028127)	-194.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	50.34	27.19	35.15	78.27	39.65	63.5	64.43	32.72	28.73
Merged-chr9-43306016-3	chr9	43305499	43306499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4764.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	14.3	13.36	18.5	7.42	13.53	12.06	4.22	7.52	0.0
Merged-chr5-124498377-3	chr5	124497875	124498875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	15220.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	39.47	20.27	13.87	56.0	33.12	30.54	48.58	40.68	24.36
Merged-chr19-55701052-3	chr19	55700546	55701546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 1 of 3)	intron (NR_045318, intron 1 of 3)	1158.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	248.84	279.24	180.37	205.11	207.6	181.66	240.81	272.37	144.89
Merged-chr17-26507441-3	chr17	26506945	26507945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013642, intron 2 of 3)	intron (NM_013642, intron 2 of 3)	1027.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	247.7	206.43	177.59	292.15	234.65	211.4	216.52	248.94	121.16
Merged-chr4-35222115-3	chr4	35221612	35222612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	Tigger7|DNA|TcMar-Tigger	3768.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	82.95	98.15	85.1	97.16	76.51	84.4	127.8	126.02	98.05
Merged-chr13-34255414-3	chr13	34254910	34255910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	89772.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	185.35	194.45	109.14	157.21	126.42	122.98	120.41	159.18	83.69
Merged-chr4-135494608-3	chr4	135494126	135495126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-48.0	NM_028995	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	118.99	112.43	85.1	125.5	86.3	63.5	111.96	95.95	69.32
Merged-chr4-139310768-3	chr4	139310266	139311266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	22.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	32.61	47.92	44.4	53.98	46.65	75.56	63.37	32.72	36.22
Merged-chr15-101145639-3	chr15	101145146	101146146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001277259)	TTS (NM_001277259)	17124.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	138.44	82.02	86.95	109.3	53.65	83.59	125.69	140.61	87.43
Merged-chr14-54765546-1	chr14	54765046	54766046	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16340.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	17.16	19.35	12.95	37.11	14.0	25.72	3.17	1.33	6.25
Merged-chr3-21936089-3	chr3	21935583	21936583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140569.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	121.28	161.27	89.72	125.5	137.15	94.04	143.64	172.45	83.06
Merged-chr7-138846203-3	chr7	138845681	138846681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	86.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	308.34	316.56	224.76	308.35	292.5	241.94	331.64	275.03	179.86
Merged-chr9-21715486-3	chr9	21715024	21716024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8052.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	29.17	36.86	56.42	47.9	36.39	74.75	76.05	103.47	53.71
Merged-chr15-81810968-3	chr15	81810488	81811488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-426.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	300.9	263.57	230.31	295.53	276.17	198.54	292.56	305.98	157.38
Merged-chr6-57692045-3	chr6	57691528	57692528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025574)	promoter-TSS (NM_025574)	50.0	NM_025574	66459.0	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	57.21	50.23	54.57	94.46	77.91	76.36	79.21	71.19	30.6
Merged-chr17-5730828-3	chr17	5730329	5731329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	intron (NM_146073, intron 7 of 8)	-67828.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	46.91	27.65	12.95	67.47	45.25	36.97	36.97	23.88	17.49
Merged-chr4-132075401-3	chr4	132074873	132075873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128607)	promoter-TSS (NM_001128607)	-60.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	207.08	230.85	141.52	217.93	264.51	207.38	164.76	225.95	123.03
Merged-chr15-96460259-3	chr15	96459770	96460770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028148, intron 1 of 14)	CpG	573.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	275.73	224.86	250.66	282.71	212.26	176.03	292.56	161.39	143.64
Merged-chr17-65674770-3	chr17	65674255	65675255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-32551.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	51.48	47.92	22.2	48.58	33.59	55.46	48.58	41.56	40.59
Merged-chr5-139408689-3	chr5	139408200	139409200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	2313.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	151.02	132.71	111.92	147.09	148.82	143.88	125.69	149.45	101.8
Merged-chrX-12824758-3	chrX	12824263	12825263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62485.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	40.04	45.16	11.1	32.39	35.45	25.72	25.35	32.72	19.36
Merged-chr17-35879761-3	chr17	35879260	35880260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026987)	promoter-TSS (NM_026987)	-18.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	46.34	36.86	38.85	36.43	24.72	61.89	36.97	35.82	23.11
Merged-chr13-30738647-3	chr13	30738145	30739145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10588.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	44.62	40.55	37.0	47.9	21.93	43.4	30.63	28.74	17.49
Merged-chr19-40831299-3	chr19	40830824	40831824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172839)	promoter-TSS (NM_172839)	45.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	77.8	41.47	31.45	83.66	64.38	43.4	80.27	40.68	22.48
Merged-chr2-35196411-3	chr2	35195916	35196916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	4704.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	37.76	45.62	28.67	39.13	27.06	45.82	57.03	32.72	33.1
Merged-chr2-142758252-3	chr2	142757732	142758732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 13 of 26)	intron (NM_001355123, intron 13 of 26)	143232.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	16.59	19.81	22.2	22.94	24.26	20.9	14.79	11.05	8.74
Merged-chr13-54789212-3	chr13	54788719	54789719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028841)	promoter-TSS (NM_028841)	-186.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	16.02	14.75	14.8	28.34	8.86	27.33	14.79	9.73	20.61
Merged-chr12-111933497-2	chr12	111932996	111933996	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10986.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	2.86	2.3	0.0	27.66	27.52	18.49	40.14	23.88	19.98
Merged-chr2-160068079-3	chr2	160067561	160068561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51408.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	86.95	90.77	20.35	98.51	111.96	82.79	26.4	26.53	24.36
Merged-chr9-45959831-3	chr9	45959330	45960330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4581.0	NM_172257	214597.0	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	71.51	60.36	36.07	46.56	47.58	64.3	35.91	59.25	39.97
Merged-chr18-34779456-3	chr18	34778964	34779964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	2456.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	28.03	23.96	26.82	19.57	14.93	13.66	39.08	26.53	30.6
Merged-chr1-132007524-3	chr1	132007028	132008028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007923)	promoter-TSS (NM_007923)	-77.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	550.89	528.06	466.18	551.24	515.49	389.03	502.74	472.23	306.64
Merged-chr6-120112631-3	chr6	120112134	120113134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	19254.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	91.53	57.6	61.05	108.63	60.18	69.93	87.66	91.97	52.46
Merged-chr6-72152812-3	chr6	72152284	72153284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-29587.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	67.5	52.99	36.07	74.22	68.11	87.61	65.48	80.92	41.22
Merged-chr9-45984818-3	chr9	45984345	45985345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357246)	promoter-TSS (NM_001357246)	26.0	NM_001357246	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	195.07	178.32	160.94	152.49	150.68	154.33	218.63	164.49	101.8
Merged-chr4-141512352-1	chr4	141511852	141512852	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	26245.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	2.86	1.38	3.7	4.05	3.27	11.25	35.91	29.63	31.23
Merged-chr9-111057498-3	chr9	111057012	111058012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302376)	promoter-TSS (NM_001302376)	6.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	518.85	349.74	185.92	432.49	343.82	206.57	314.74	375.84	151.14
Merged-chr1-91052999-3	chr1	91052494	91053494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310732)	promoter-TSS (NM_001310732)	-450.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	141.3	117.04	122.09	134.94	107.3	129.41	119.35	125.58	66.82
Merged-chr1-105787179-3	chr1	105786679	105787679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	6456.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	82.95	82.48	95.27	72.19	51.32	81.18	66.54	71.63	62.45
Merged-chr7-132686657-3	chr7	132686140	132687140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	75997.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	9.15	9.68	0.92	16.19	8.4	3.22	8.45	11.94	13.74
Merged-chr11-69040343-3	chr11	69039808	69040808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5329.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	86.38	114.27	80.47	98.51	64.38	66.71	90.83	128.23	77.44
Merged-chr6-37143932-4	chr6	37143417	37144417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156059.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	61.78	74.19	55.5	55.33	37.32	58.68	88.72	116.73	58.08
Merged-chr8-84984850-3	chr8	84984327	84985327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	237.97	232.7	201.64	238.18	255.18	147.09	268.27	263.97	151.76
Merged-chr14-17756987-3	chr14	17756477	17757477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	96017.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	73.79	76.95	76.77	70.85	62.98	45.01	71.82	56.6	39.35
Merged-chr1-23184881-3	chr1	23184324	23185324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82571.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	35.47	41.01	63.82	40.48	28.92	35.37	43.3	42.01	46.22
Merged-chr2-125247537-3	chr2	125247006	125248006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023595)	promoter-TSS (NM_023595)	-9.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	12.59	7.37	5.55	20.24	7.0	8.84	12.67	8.4	18.11
Merged-chr8-57594411-3	chr8	57593901	57594901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-57352.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	93.24	97.69	45.32	80.29	53.18	34.56	106.67	121.6	28.73
Merged-chr2-117412248-3	chr2	117411749	117412749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69372.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	26.31	15.67	10.17	17.54	9.8	8.04	27.46	9.73	10.62
Merged-chr4-139166421-3	chr4	139165902	139166902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14253.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	165.9	103.22	45.32	129.55	92.84	89.22	104.56	94.62	68.7
Merged-chr2-91183981-3	chr2	91183495	91184495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-948.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	43.48	44.24	48.1	47.23	26.59	40.19	44.36	34.05	57.46
Merged-chr3-8923693-3	chr3	8923194	8924194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025434, exon 1 of 3)	exon (NM_025434, exon 1 of 3)	163.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	266.0	271.86	209.04	255.04	225.32	153.52	275.66	270.16	139.27
Merged-chr4-132816614-3	chr4	132816102	132817102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20238.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	110.41	99.99	86.95	88.39	53.65	80.38	80.27	84.45	69.95
Merged-chr18-6456441-3	chr18	6455954	6456954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	34192.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	29.75	34.1	27.75	18.22	21.93	39.39	31.69	36.26	19.98
Merged-chr6-129474713-3	chr6	129474236	129475236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1957.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	15.45	6.91	7.4	20.92	19.13	8.04	22.18	20.78	14.99
Merged-chr5-124475438-3	chr5	124474940	124475940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	2795.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	177.34	117.96	95.27	176.1	92.84	114.94	162.65	164.49	99.3
Merged-chr13-110394987-3	chr13	110394487	110395487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152804)	promoter-TSS (NM_152804)	-57.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	288.89	226.25	204.41	292.15	237.45	213.81	181.66	174.21	121.16
Merged-chr5-92348984-3	chr5	92348474	92349474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-85.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	140.15	139.16	79.55	120.1	80.71	50.64	123.57	168.47	64.95
Merged-chr5-90742252-3	chr5	90741762	90742762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17036.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	48.62	50.23	12.95	31.71	28.92	16.88	28.52	21.67	12.49
Merged-chr7-84611755-3	chr7	84611243	84612243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5801.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	9.15	10.6	25.9	18.89	4.67	16.88	9.51	7.96	9.99
Merged-chr19-18591254-1	chr19	18590754	18591754	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 5 of 9)	MER20|DNA|hAT-Charlie	40559.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.72	3.23	5.55	4.72	6.53	15.27	2.11	2.65	12.49
Merged-chr4-11006903-3	chr4	11006391	11007391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	728.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	292.89	228.09	189.62	208.49	194.07	174.42	307.35	247.17	186.11
Merged-chr19-32292686-3	chr19	32292229	32293229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	56587.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	85.24	75.57	25.9	62.07	79.31	42.6	35.91	26.09	15.61
Merged-chr13-5939522-3	chr13	5939011	5940011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78022.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.15	13.82	18.5	16.19	6.06	3.22	8.45	7.07	8.12
Merged-chr12-99789781-3	chr12	99789304	99790304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	93638.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	65.79	54.83	44.4	88.39	39.19	27.33	55.98	41.56	44.97
Merged-chr19-17276722-1	chr19	17276222	17277222	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62783.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	2.86	3.69	0.0	1.35	7.0	4.82	190.11	248.06	108.04
Merged-chr6-124805336-1	chr6	124804836	124805836	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-3325.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	149.88	109.21	58.27	165.98	153.01	121.37	89.78	73.84	41.84
Merged-chr5-30650906-3	chr5	30650393	30651393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2954.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	168.18	161.27	144.29	226.03	235.59	189.69	195.39	196.76	112.42
Merged-chr9-110781528-3	chr9	110781008	110782008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16677.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	17.73	13.82	29.6	29.01	20.99	20.9	20.07	11.5	2.5
Merged-chr1-165764248-3	chr1	165763747	165764747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011804, intron 1 of 3)	intron (NM_011804, intron 1 of 3)	489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	407.87	369.09	254.36	390.66	372.74	267.66	386.56	466.49	195.48
Merged-chr17-84981846-3	chr17	84981358	84982358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	16833.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	21.74	12.9	10.17	9.45	9.33	11.25	22.18	11.5	27.48
Merged-chr11-80383259-3	chr11	80382746	80383746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-33.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	308.91	403.19	257.14	295.53	294.83	236.31	285.17	406.35	232.32
Merged-chr16-95702493-3	chr16	95701989	95702989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011809)	promoter-TSS (NM_011809)	82.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	481.1	444.2	376.46	506.71	492.63	411.54	434.09	492.13	222.96
Merged-chr17-84957796-3	chr17	84957289	84958289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159496)	promoter-TSS (NM_001159496)	-79.0	NR_027930	68531.0	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	191.07	189.38	187.77	199.04	150.22	151.11	197.51	201.19	121.78
Merged-chr6-24756590-3	chr6	24756095	24757095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029848, exon 3 of 5)	exon (NM_029848, exon 3 of 5)	8228.0	NM_029848	77042.0	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	23.45	32.72	14.8	39.81	21.46	31.35	33.8	32.72	28.1
Merged-chr3-65528361-3	chr3	65527864	65528864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-83.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	322.64	256.2	301.53	373.12	304.16	324.73	301.01	297.58	197.35
Merged-chr3-51276219-3	chr3	51275729	51276729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073429)	promoter-TSS (NR_073429)	-532.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	194.5	175.1	186.84	184.2	162.81	157.54	164.76	173.77	123.66
Merged-chr4-128984774-3	chr4	128984280	128985280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8444.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	141.3	166.34	107.29	147.09	127.82	99.67	199.62	203.4	59.95
Merged-chr7-68749382-3	chr7	68748911	68749911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025549)	promoter-TSS (NM_025549)	-173.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	59.49	88.47	57.35	68.82	69.98	83.59	85.55	80.03	60.58
Merged-chr1-45825376-3	chr1	45824881	45825881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	30215.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	52.63	66.81	29.6	48.58	50.38	52.25	70.76	68.09	52.46
Merged-chr13-30660306-3	chr13	30659791	30660791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 1 of 7)	intron (NM_134068, intron 1 of 7)	232.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	310.05	208.27	172.97	320.49	182.4	208.18	318.97	263.09	159.88
Merged-chr9-61385981-3	chr9	61385475	61386475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	13609.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	61.21	38.71	26.82	54.65	27.99	22.51	55.98	35.37	24.98
Merged-chr2-128819170-3	chr2	128818655	128819655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355629, intron 1 of 18)	intron (NM_001355629, intron 1 of 18)	852.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	132.72	150.22	119.32	169.35	196.4	136.64	137.3	152.99	100.55
Merged-chr15-53556625-2	chr15	53556138	53557138	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	57641.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	52.06	75.11	50.87	51.95	44.78	58.68	52.81	65.88	63.08
Merged-chrX-169973487-1	chrX	169972987	169973987	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 3 of 9)	intron (NM_010797, intron 3 of 9)	5430.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.57	0.0	0.0	3.37	0.93	8.04	38.02	26.53	33.72
Merged-chr9-107612877-3	chr9	107612377	107613377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3636.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	424.46	294.9	227.54	396.06	290.17	254.0	301.01	266.18	195.48
Merged-chr15-64083370-3	chr15	64082874	64083874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22926.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	114.41	122.57	86.02	130.9	105.43	75.56	67.6	88.43	74.32
Merged-chr6-31221728-3	chr6	31221227	31222227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	intron (NR_040260, intron 1 of 5)	1376.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	84.09	67.27	33.3	76.24	50.85	34.56	39.08	38.03	18.11
Merged-chr1-152525113-3	chr1	152524611	152525611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	100106.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	49.2	39.17	34.22	45.88	17.73	37.78	39.08	21.67	17.49
Merged-chr11-100738312-3	chr11	100737809	100738809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024456)	promoter-TSS (NM_024456)	-94.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	170.47	197.22	161.87	176.1	169.81	155.13	184.83	233.91	131.78
Merged-chr5-86085168-3	chr5	86084668	86085668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 3 of 7)	intron (NM_001310639, intron 3 of 7)	13422.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	26.89	15.67	12.95	21.59	8.4	13.66	36.97	15.48	24.98
Merged-chr1-152526438-3	chr1	152525936	152526936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	intron (NM_016846, intron 15 of 17)	98781.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	85.24	64.51	39.77	86.36	42.45	56.27	58.09	52.62	33.1
Merged-chr11-95413879-3	chr11	95413380	95414380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025287)	promoter-TSS (NM_025287)	-203.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	243.12	119.8	114.69	182.85	67.64	107.71	164.76	134.86	95.55
Merged-chr5-28037797-3	chr5	28037310	28038310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33602.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	85.81	129.48	76.77	128.87	145.55	147.9	132.02	182.62	65.58
Merged-chr14-15062963-3	chr14	15062506	15063506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	242191.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	46.91	62.21	62.9	64.1	74.17	69.13	127.8	127.34	50.59
Merged-chr4-139380549-3	chr4	139380057	139381057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-102.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	281.45	256.2	200.71	201.74	175.41	147.09	201.73	229.48	159.88
Merged-chr11-69073548-3	chr11	69073051	69074051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_028566)	TTS (NR_028566)	125.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	329.5	294.9	99.89	304.3	288.77	124.59	259.82	381.59	102.42
Merged-chr15-81730054-3	chr15	81729563	81730563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146174)	promoter-TSS (NM_001146174)	-144.0	NM_001358622	19387.0	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	26.89	30.41	13.87	26.99	28.92	31.35	30.63	34.93	16.86
Merged-chr11-44529464-3	chr11	44528908	44529908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	10031.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	48.62	31.79	30.52	55.33	31.72	54.66	89.78	54.83	49.34
Merged-chr2-124609893-1	chr2	124609393	124610393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172537)	promoter-TSS (NM_172537)	-403.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	257.42	294.44	260.84	288.1	287.37	274.9	293.62	320.13	151.76
Merged-chr11-83065021-3	chr11	83064539	83065539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-73.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	278.02	201.36	135.04	271.91	170.28	177.64	292.56	251.59	157.38
Merged-chr5-121711062-3	chr5	121710560	121711560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	-549.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	206.51	135.93	158.17	199.72	111.03	118.96	233.42	163.6	88.68
Merged-chr5-30666722-3	chr5	30666237	30667237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302130)	promoter-TSS (NM_001302130)	-149.0	NM_007681	12615.0	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	148.16	142.84	94.35	149.11	174.94	131.82	166.88	165.81	64.33
Merged-chr11-69759097-3	chr11	69758582	69759582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-449.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	462.22	350.66	270.09	450.04	328.89	251.59	363.33	428.9	158.01
Merged-chr5-137032866-3	chr5	137032374	137033374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2579.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	22.88	14.75	9.25	18.22	9.33	29.74	15.84	7.96	17.49
Merged-chr11-72429611-3	chr11	72429109	72430109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR55|LTR|ERVL?	-5917.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	8.58	10.14	14.8	14.17	3.73	19.29	17.96	17.24	5.0
Merged-chr2-140170635-3	chr2	140170130	140171130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081090)	promoter-TSS (NM_001081090)	-16.0	NM_027093	69487.0	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	49.77	28.11	39.77	47.23	34.06	40.99	49.64	35.82	16.24
Merged-chr1-131277012-3	chr1	131276522	131277522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019777, intron 2 of 21)	intron (NM_019777, intron 2 of 21)	2541.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	62.93	70.5	74.0	52.63	26.12	72.34	92.94	60.13	90.56
Merged-chr9-77737524-3	chr9	77737002	77738002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17033.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	130.43	141.46	98.97	149.11	139.02	136.64	67.6	57.48	41.84
Merged-chr13-117223298-3	chr13	117222806	117223806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	MIR|SINE|MIR	2733.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	10.87	13.82	9.25	12.14	7.46	1.61	4.22	4.42	2.5
Merged-chr6-58999146-3	chr6	58998642	58999642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	25360.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	53.77	46.08	40.7	59.38	44.78	43.4	40.14	40.68	21.86
Merged-chr16-85148784-3	chr16	85148291	85149291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	24916.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	41.76	38.71	42.55	41.83	31.26	26.53	34.85	25.2	36.85
Merged-chr6-134539650-3	chr6	134539148	134540148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27265.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	152.74	186.16	67.52	134.27	137.62	78.77	219.69	286.97	103.05
Merged-chr2-45653176-2	chr2	45652687	45653687	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-43418.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.72	6.45	3.7	18.89	7.0	4.02	15.84	11.94	9.99
Merged-chr3-146450587-3	chr3	146450092	146451092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001293672, exon 1 of 7)	exon (NM_001293672, exon 1 of 7)	125.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	172.76	207.35	139.67	170.7	147.88	157.54	146.81	185.27	124.91
Merged-chr19-29325341-3	chr19	29324847	29325847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013754)	promoter-TSS (NM_013754)	-29.0	NM_013754	27356.0	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	5.72	5.99	4.62	8.1	7.46	3.22	2.11	7.52	6.25
Merged-chr1-71988283-3	chr1	71987783	71988783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	intron (NR_040454, intron 1 of 2)	16912.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	5.15	1.84	1.85	8.1	6.06	4.82	3.17	4.86	1.25
Merged-chr12-69199690-3	chr12	69199189	69200189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033222, exon 2 of 2)	non-coding (NR_033222, exon 2 of 2)	-1260.0	NM_027269	109065.0	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	74.37	60.36	67.52	55.33	48.52	36.17	45.42	65.88	53.71
Merged-chr12-4236503-3	chr12	4236017	4237017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001204912, exon 2 of 2)	exon (NM_001204912, exon 2 of 2)	2490.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	100.11	108.28	82.32	91.09	73.71	97.26	90.83	114.08	89.93
Merged-chr14-47735511-3	chr14	47735021	47736021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347525, intron 39 of 39)	intron (NM_001347525, intron 39 of 39)	71765.0	NM_001347522	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	18.88	8.75	18.5	18.89	14.0	18.49	12.67	7.96	20.61
Merged-chr7-84152159-3	chr7	84151639	84152639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133722)	promoter-TSS (NM_133722)	-246.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	22.88	7.83	31.45	14.84	8.86	12.86	46.47	13.27	21.86
Merged-chr11-22990522-3	chr11	22990031	22991031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009837)	promoter-TSS (NM_009837)	-62.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	157.31	144.69	94.35	172.05	175.41	110.92	154.2	139.72	57.46
Merged-chr9-124112762-3	chr9	124112274	124113274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	16.59	14.28	14.8	24.29	16.33	24.92	24.29	16.36	12.49
Merged-chr13-94711517-3	chr13	94711050	94712050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77393.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	38.33	35.48	33.3	35.09	39.19	49.83	29.57	34.05	29.35
Merged-chr1-135688121-3	chr1	135687609	135688609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31954.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	90.38	116.12	44.4	49.93	23.33	24.92	26.4	14.59	16.24
Merged-chr15-101379385-3	chr15	101378885	101379885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9260.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	91.53	90.77	98.05	89.74	97.03	86.01	40.14	70.75	52.46
Merged-chr16-94724381-3	chr16	94723836	94724836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112917.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	37.18	30.41	24.05	75.57	70.91	49.83	36.97	21.22	17.49
Merged-chr3-79286801-3	chr3	79286317	79287317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58559.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	273.44	177.86	149.84	189.6	128.76	80.38	137.3	67.65	92.43
Merged-chr4-9118480-3	chr4	9117965	9118965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150828.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	33.18	27.19	12.95	45.88	30.79	55.46	71.82	51.73	54.33
Merged-chr10-29361952-4	chr10	29361536	29362536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001110196, exon 1 of 3)	5' UTR (NM_001110196, exon 1 of 3)	406.0	NM_026518	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	348.95	266.33	236.79	364.35	254.25	258.82	317.91	167.58	153.01
Merged-chr11-98941983-3	chr11	98941488	98942488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	2277.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	179.62	91.7	98.05	165.98	76.04	95.65	156.32	114.08	67.45
Merged-chr5-123136977-3	chr5	123136483	123137483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4354.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	129.86	146.99	97.12	150.46	100.3	139.06	152.09	174.21	94.3
Merged-chr18-67390656-3	chr18	67390180	67391180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-51.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	244.84	194.91	135.97	216.58	185.2	164.78	157.37	150.34	88.68
Merged-chr17-53570554-3	chr17	53570058	53571058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	3587.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	81.23	61.75	67.52	59.38	41.05	65.11	104.56	83.57	54.96
Merged-chr6-65596688-3	chr6	65596197	65597197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 3 of 7)	intron (NM_001001495, intron 3 of 7)	6299.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	13.16	11.98	6.47	14.84	9.33	9.65	11.62	11.5	6.25
Merged-chr10-8067081-3	chr10	8066582	8067582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110959.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	29.17	43.77	48.1	47.23	22.39	35.37	45.42	35.82	38.1
Merged-chr14-59598002-3	chr14	59597502	59598502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168535)	promoter-TSS (NM_001168535)	-43.0	NM_001168536	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	137.86	144.69	113.77	158.56	118.03	120.57	192.23	148.13	74.32
Merged-chr5-76139308-3	chr5	76138809	76139809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020611)	promoter-TSS (NM_020611)	-964.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	57.21	84.32	32.37	14.84	15.39	20.9	23.24	23.43	6.87
Merged-chr1-60852546-3	chr1	60852051	60853051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56474.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	22.31	25.8	6.47	35.76	12.6	12.06	29.57	23.88	8.74
Merged-chr16-94519159-3	chr16	94518619	94519619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7510.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	124.14	108.28	86.02	130.22	95.17	84.4	92.94	92.41	51.21
Merged-chr12-82170064-3	chr12	82169525	82170525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	9.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	86.95	47.46	56.42	79.62	56.45	61.09	71.82	58.37	38.72
Merged-chr8-4166312-3	chr8	4165772	4166772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039578)	promoter-TSS (NM_001039578)	-295.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	25.17	24.42	10.17	14.84	7.93	14.47	20.07	15.92	8.74
Merged-chr2-80080618-3	chr2	80080134	80081134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-41732.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	110.98	153.44	75.85	156.53	183.34	107.71	153.15	206.49	113.66
Merged-chrX-140504067-3	chrX	140503522	140504522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38646.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	7.44	11.52	9.25	18.89	10.73	19.29	9.51	10.61	16.24
Merged-chr8-106415939-3	chr8	106415418	106416418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	579.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	101.25	86.63	87.87	128.87	110.1	118.96	138.36	163.16	91.81
Merged-chr13-42829139-3	chr13	42828641	42829641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-37106.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	187.06	223.94	74.0	198.37	191.73	110.92	172.16	222.85	84.94
Merged-chr4-106651015-3	chr4	106650522	106651522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285784)	promoter-TSS (NM_001285784)	-47.0	NM_001285783	230577.0	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	6.86	4.15	6.47	16.19	16.79	16.88	20.07	10.17	12.49
Merged-chr2-23156493-3	chr2	23155993	23156993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025979)	promoter-TSS (NM_025979)	-12.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	292.32	406.87	246.96	239.52	357.81	307.05	352.77	401.93	205.47
Merged-chr19-32311229-3	chr19	32310719	32311719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	38097.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	22.88	21.2	17.57	20.24	12.13	22.51	15.84	14.59	13.12
Merged-chr2-167254410-3	chr2	167253879	167254879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13842.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	184.77	126.25	125.79	218.61	195.93	142.27	258.77	292.27	109.29
Merged-chr9-113708057-5	chr9	113707552	113708552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164677, exon 1 of 18)	exon (NM_001164677, exon 1 of 18)	207.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	278.02	311.49	199.79	300.92	309.76	250.78	213.35	252.92	158.01
Merged-chr6-29217865-3	chr6	29217370	29218370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1506.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	36.61	41.93	42.55	38.46	38.25	52.25	38.02	45.99	20.61
Merged-chr10-67549254-5	chr10	67548762	67549762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005419)	promoter-TSS (NM_001005419)	-307.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	363.25	362.64	308.93	400.11	328.42	302.22	419.31	333.39	160.5
Merged-chr11-117799408-3	chr11	117798914	117799914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029964, intron 2 of 5)	intron (NM_029964, intron 2 of 5)	1754.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	32.61	23.96	20.35	36.43	14.46	16.08	28.52	20.78	11.24
Merged-chr11-118148118-2	chr11	118147616	118148616	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-18897.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	39.47	55.75	39.77	141.69	118.03	155.93	61.26	58.37	71.2
Merged-chr7-28053633-1	chr7	28053133	28054133	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3541.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	7.44	11.06	1.85	16.19	17.73	6.43	7.39	12.38	8.74
Merged-chr10-80590408-3	chr10	80589904	80590904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145421)	promoter-TSS (NM_145421)	-63.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	56.63	48.84	51.8	61.4	31.26	57.07	65.48	50.85	47.46
Merged-chr14-31495089-3	chr14	31494561	31495561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359850)	promoter-TSS (NM_001359850)	-18.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	257.42	261.73	219.21	309.02	285.5	210.59	290.45	326.32	115.54
Merged-chr4-9657510-3	chr4	9657020	9658020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11642.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	161.32	123.49	81.4	187.57	129.22	134.23	193.28	147.68	97.43
Merged-chr11-3159818-2	chr11	3159312	3160312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	78.37	111.05	142.44	106.61	143.22	194.52	0.0	0.44	202.35
Merged-chrX-9467233-3	chrX	9466749	9467749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 1 of 12)	intron (NM_007807, intron 1 of 12)	2075.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	160.18	171.41	76.77	141.69	120.83	89.22	136.25	145.03	61.83
Merged-chr11-29787013-3	chr11	29786438	29787438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38730.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	146.45	205.97	104.52	170.7	146.02	102.88	179.55	229.93	111.17
Merged-chr10-105575464-3	chr10	105574974	105575974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177368)	promoter-TSS (NM_177368)	923.0	NR_038032	327812.0	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	2.29	1.84	0.0	4.05	4.2	3.22	1.06	4.86	3.75
Merged-chr11-75679924-3	chr11	75679427	75680427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277221, intron 1 of 1)	intron (NM_001277221, intron 1 of 1)	668.0	NM_001277221	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	342.09	356.65	320.96	298.9	328.42	274.9	293.62	326.76	193.6
Merged-chr1-191183432-3	chr1	191182870	191183870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007498)	promoter-TSS (NM_007498)	-37.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	231.68	170.49	153.54	261.79	199.2	121.37	198.56	194.11	108.04
Merged-chr9-102626273-3	chr9	102625835	102626835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	39.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	332.36	357.57	240.49	254.37	304.16	249.17	320.02	290.06	129.9
Merged-chr18-66410644-3	chr18	66410153	66411153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47951.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	1.14	6.45	3.7	3.37	0.93	1.61	4.22	1.33	1.25
Merged-chr8-126848303-3	chr8	126847793	126848793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-727.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	193.35	177.86	135.97	197.69	153.48	165.58	197.51	232.14	94.3
Merged-chr8-66494603-3	chr8	66494107	66495107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8077.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	23.45	15.21	15.72	29.69	13.53	13.66	43.3	25.65	15.61
Merged-chr14-19417854-3	chr14	19417365	19418365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	184722.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	284.88	1321.07	110.99	375.82	1529.21	136.64	826.99	735.77	143.02
Merged-chr4-155734544-3	chr4	155734039	155735039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101506)	promoter-TSS (NM_001101506)	-265.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	165.32	150.22	177.59	176.1	148.35	201.75	185.89	172.45	82.44
Merged-chr11-55116125-3	chr11	55115625	55116625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18140.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	43.48	30.87	37.92	51.28	16.79	28.13	31.69	31.39	23.73
Merged-chr15-68363412-3	chr15	68362919	68363919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22130.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	93.24	88.01	75.85	76.92	48.05	49.83	121.46	89.76	56.83
Merged-chr8-106011431-3	chr8	106010930	106011930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025518)	promoter-TSS (NM_025518)	-48.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	61.78	69.58	43.47	105.26	97.03	104.49	86.61	89.32	49.96
Merged-chr6-145121763-3	chr6	145121253	145122253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008511)	promoter-TSS (NM_008511)	14.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	243.12	250.21	249.74	267.19	266.38	200.14	287.28	332.95	166.12
Merged-chr7-35140038-3	chr7	35139537	35140537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20744.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	68.65	46.08	45.32	54.65	32.19	36.17	33.8	34.49	31.23
Merged-chr11-98202967-5	chr11	98202462	98203462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109626)	promoter-TSS (NM_001109626)	-343.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	411.31	390.74	324.66	373.12	363.88	240.33	329.53	356.83	266.05
Merged-chr10-34282155-3	chr10	34281666	34282666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-24.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	445.63	398.58	209.04	433.84	358.28	273.29	331.64	340.47	184.86
Merged-chr5-146231088-3	chr5	146230553	146231553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359990)	promoter-TSS (NM_001359990)	-197.0	NM_001359990	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	111.55	58.06	108.22	96.48	61.58	82.79	118.29	65.88	56.83
Merged-chr13-115958556-3	chr13	115958052	115959052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351136.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	15.45	12.44	9.25	32.39	33.12	16.88	20.07	33.6	16.24
Merged-chr1-123934537-3	chr1	123934036	123935036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111023.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	83.52	85.71	49.95	113.35	88.17	108.51	102.45	133.98	86.81
Merged-chr16-36941360-3	chr16	36940854	36941854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	6371.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	127.0	157.59	68.45	117.4	87.24	135.04	171.1	169.35	104.92
Merged-chr18-4368428-3	chr18	4367940	4368940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	-7152.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	21.17	41.01	46.25	31.71	26.59	48.23	57.03	42.01	38.72
Merged-chr19-12013420-3	chr19	12012924	12013924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23316.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	425.04	363.56	181.29	439.24	317.23	270.07	409.8	435.98	168.0
Merged-chr16-55974596-3	chr16	55974098	55975098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027965)	promoter-TSS (NR_027965)	19.0	NR_027965	66391.0	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	656.72	704.54	556.82	608.6	751.08	486.29	447.82	536.79	351.61
Merged-chr6-57770634-3	chr6	57770130	57771130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	54495.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	49.77	56.22	52.72	53.3	33.59	62.7	35.91	43.77	26.85
Merged-chr13-69809861-3	chr13	69809351	69810351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138596)	promoter-TSS (NM_138596)	-31.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	28.03	27.65	20.35	36.43	24.26	41.8	33.8	32.28	24.98
Merged-chr8-27260254-3	chr8	27259727	27260727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007918)	promoter-TSS (NM_007918)	-100.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	84.09	69.58	60.12	92.44	96.57	87.61	89.78	83.57	63.08
Merged-chr3-137980877-3	chr3	137980379	137981379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	670.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	140.15	163.12	101.74	110.65	137.62	92.44	126.74	170.68	68.07
Merged-chr12-101958289-3	chr12	101957789	101958789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-46.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	182.49	167.26	111.92	147.76	170.74	163.17	174.27	206.93	126.15
Merged-chr8-90877087-3	chr8	90876575	90877575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	48240.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	262.0	254.35	290.44	265.84	227.19	275.7	192.23	198.98	117.41
Merged-chr5-24425242-3	chr5	24424743	24425743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	11.0	NM_009207	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	89.81	85.25	80.47	78.27	75.57	117.35	120.41	114.08	59.33
Merged-chr10-127313026-3	chr10	127312526	127313526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	110.41	90.31	66.6	92.44	51.78	86.01	122.52	138.84	71.2
Merged-chr15-31350139-4	chr15	31349627	31350627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	17632.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	63.5	41.01	27.75	116.05	89.1	94.85	50.7	38.91	35.6
Merged-chr18-36342079-3	chr18	36341599	36342599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6525.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	18.88	13.82	8.32	22.27	13.53	23.31	21.12	16.36	6.25
Merged-chr17-50192579-3	chr17	50192071	50193071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2074.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	6.86	4.61	0.0	13.49	4.67	6.43	4.22	7.07	5.0
Merged-chr3-54719143-3	chr3	54718641	54719641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358017, intron 20 of 24)	intron (NM_001358017, intron 20 of 24)	16223.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	9.15	14.28	15.72	8.77	8.86	12.86	12.67	11.94	10.62
Merged-chr3-86999214-3	chr3	86998709	86999709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007639, exon 1 of 6)	exon (NM_007639, exon 1 of 6)	131.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	131.57	215.19	154.47	163.28	180.54	181.66	132.02	175.1	91.81
Merged-chr17-59189757-2	chr17	59189260	59190260	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-176438.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	4.0	2.76	1.85	2.02	1.87	1.61	1.06	6.19	3.75
Merged-chr19-9978599-3	chr19	9978099	9979099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2001.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	179.62	161.27	129.49	240.2	173.07	140.66	192.23	191.02	94.3
Merged-chr12-30606923-3	chr12	30606407	30607407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22464.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	13.73	13.82	0.92	10.8	14.93	9.65	6.34	9.29	7.49
Merged-chr5-33820381-4	chr5	33819848	33820848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22764.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	50.34	29.95	49.02	37.11	29.39	49.03	69.71	20.34	36.22
Merged-chr7-30332106-3	chr7	30331569	30332569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9694.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	6.86	3.23	1.85	8.77	1.87	3.22	1.06	1.33	1.25
Merged-chr5-143490166-3	chr5	143489678	143490678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 9 of 14)	intron (NM_144915, intron 9 of 14)	25685.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	27.46	43.77	27.75	64.77	73.24	49.03	41.19	70.3	44.34
Merged-chr12-26456560-3	chr12	26456081	26457081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021384)	promoter-TSS (NM_021384)	-129.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	179.05	251.13	112.84	183.52	165.14	155.93	197.51	244.52	118.04
Merged-chr18-53862487-1	chr18	53861987	53862987	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_152809, exon 1 of 13)	5' UTR (NM_152809, exon 1 of 13)	374.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	181.34	150.68	136.89	199.04	144.15	122.98	147.87	109.66	84.94
Merged-chr6-134247498-3	chr6	134247001	134248001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-148828.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	36.61	33.18	23.12	35.76	29.86	16.08	59.15	50.85	32.48
Merged-chr16-5233557-3	chr16	5233078	5234078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145362)	promoter-TSS (NM_145362)	-43.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	137.29	147.45	96.2	161.26	160.95	120.57	166.88	126.9	63.08
Merged-chrX-42152180-3	chrX	42151656	42152656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	1455.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	105.83	130.4	62.9	81.64	77.91	59.48	103.51	122.92	84.94
Merged-chr16-35770350-3	chr16	35769829	35770829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-57.0	NR_152314	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	231.11	271.4	104.52	280.68	273.84	218.63	224.97	266.18	104.92
Merged-chr13-34188541-5	chr13	34188052	34189052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	intron (NM_001033167, intron 10 of 10)	25588.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	144.16	139.16	67.52	202.42	102.17	45.82	142.59	149.01	49.34
Merged-chr10-72654825-3	chr10	72654329	72655329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293684)	promoter-TSS (NM_001293684)	-17.0	NM_025635	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	131.0	119.8	60.12	108.63	107.76	117.35	102.45	113.64	40.59
Merged-chr18-9806706-1	chr18	9806206	9807206	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	URR1B|DNA|hAT-Charlie	99058.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	6.86	3.23	10.17	20.92	20.06	28.13	1.06	1.77	4.37
Merged-chr1-171786277-1	chr1	171785777	171786777	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360898, intron 3 of 4)	intron (NM_001360898, intron 3 of 4)	19145.0	NM_001360898	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.58	3.23	0.0	7.42	5.13	12.06	3.17	2.65	1.25
Merged-chr5-102061390-3	chr5	102060885	102061885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	8536.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	79.52	101.37	62.9	101.21	93.3	107.71	143.64	168.02	69.32
Merged-chr11-82781342-4	chr11	82780830	82781830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126067)	promoter-TSS (NR_126067)	221.0	NM_010716	16882.0	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	318.63	308.26	234.01	330.61	285.04	226.67	326.36	279.45	143.64
Merged-chr6-134310431-2	chr6	134309924	134310924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 8 of 8)	L1_Mus2|LINE|L1	-85905.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	9.72	7.37	9.25	11.47	6.53	6.43	3.17	1.33	2.5
Merged-chr18-54971470-3	chr18	54970962	54971962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	Lx5c|LINE|L1	18718.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	196.21	192.61	119.32	154.51	151.62	106.9	87.66	102.58	64.33
Merged-chr6-34317567-3	chr6	34317081	34318081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009658)	promoter-TSS (NM_009658)	-92.0	NM_009658	11677.0	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	144.73	139.16	98.05	145.74	149.28	122.18	175.33	189.69	79.32
Merged-chr5-63938827-3	chr5	63938303	63939303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	30094.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	5.15	10.6	1.85	10.8	2.8	1.61	5.28	5.31	2.5
Merged-chr10-61423026-3	chr10	61422546	61423546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5074.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	18.88	21.66	20.35	27.66	31.72	20.9	30.63	40.24	26.23
Merged-chr8-11478586-3	chr8	11478077	11479077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-78.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	326.07	310.11	305.23	377.17	367.61	236.31	310.52	370.09	201.1
Merged-chr2-158794725-3	chr2	158794218	158795218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291144)	promoter-TSS (NM_001291144)	-89.0	NM_145742	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	32.61	36.4	42.55	40.48	55.98	31.35	51.75	38.91	51.21
Merged-chr7-81348448-3	chr7	81347942	81348942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357107, intron 9 of 9)	intron (NM_001357107, intron 9 of 9)	-3208.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	63.5	57.14	29.6	49.25	37.79	57.87	28.52	32.72	33.72
Merged-chr10-19087247-3	chr10	19086752	19087752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54497.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	16.02	13.36	23.12	26.31	8.86	14.47	14.79	6.19	7.49
Merged-chr1-156533694-3	chr1	156533195	156534195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25092.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	101.83	98.61	104.52	70.17	50.85	61.89	57.03	61.02	29.35
Merged-chr5-122502326-4	chr5	122501870	122502870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-145.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	200.79	132.25	146.14	212.54	116.16	120.57	145.75	91.09	78.69
Merged-chr4-132009959-3	chr4	132009477	132010477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	39101.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	186.49	181.55	120.24	234.13	156.28	111.73	171.1	214.01	92.43
Merged-chr15-50650013-3	chr15	50649506	50650506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	239043.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	69.79	85.25	42.55	62.75	41.52	51.44	78.16	84.01	51.21
Merged-chrX-168672604-3	chrX	168672110	168673110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	intron (NM_010832, intron 1 of 11)	1292.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	68.07	121.65	77.7	73.54	84.9	52.25	88.72	115.85	58.71
Merged-chr3-59248139-3	chr3	59247655	59248655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 24 of 43)	intron (NM_177855, intron 24 of 43)	14830.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	21.17	15.21	14.8	17.54	22.86	33.76	10.56	15.92	19.36
Merged-chr3-41412883-3	chr3	41412379	41413379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80320.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	34.9	35.48	21.27	39.13	27.52	21.7	27.46	15.92	8.74
Merged-chr11-5520918-3	chr11	5520426	5521426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001271730, exon 1 of 6)	5' UTR (NM_001271730, exon 1 of 6)	285.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	692.76	678.74	509.65	592.4	638.65	404.31	462.61	519.99	311.01
Merged-chr19-41382853-3	chr19	41382347	41383347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	2223.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	438.19	378.76	180.37	356.93	323.76	264.45	397.13	494.79	170.5
Merged-chr11-74827155-3	chr11	74826650	74827650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3774.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	116.13	109.21	84.17	172.05	180.07	204.16	96.11	91.97	62.45
Merged-chr1-193894275-3	chr1	193893779	193894779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	328480.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	24.6	25.8	3.7	24.96	19.13	4.82	5.28	4.42	3.75
Merged-chr17-50170093-3	chr17	50169599	50170599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	20398.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	12.01	10.14	11.1	15.52	7.0	4.82	16.9	10.17	12.49
Merged-chr7-92874363-3	chr7	92873794	92874794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028243)	promoter-TSS (NM_028243)	-47.0	NM_001080995	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	370.12	270.94	198.87	352.2	249.58	225.06	320.02	268.84	150.51
Merged-chr11-73326657-3	chr11	73326169	73327169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2032.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	210.52	239.61	92.5	214.56	251.91	118.16	177.44	195.0	94.93
Merged-chr8-108848668-1	chr8	108848168	108849168	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-88192.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	7.44	1.38	3.7	6.75	1.4	4.82	25.35	23.88	20.61
Merged-chr11-38123972-3	chr11	38123470	38124470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	396075.0	NR_040295	100502917.0	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	5.72	4.15	0.0	2.7	4.2	4.82	1.06	2.21	3.75
Merged-chr4-140566966-3	chr4	140566472	140567472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112723, intron 16 of 26)	intron (NM_001112723, intron 16 of 26)	81784.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	9.72	7.37	0.0	3.37	2.8	1.61	11.62	4.86	8.74
Merged-chr8-105413579-3	chr8	105413069	105414069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177791)	promoter-TSS (NM_177791)	-53.0	NM_001170788	270091.0	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	12.01	6.45	1.85	16.19	4.67	7.23	12.67	7.07	6.25
Merged-chr3-116424035-3	chr3	116423565	116424565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080818)	promoter-TSS (NM_001080818)	-33.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	57.78	58.52	49.95	71.52	51.78	69.93	78.16	64.11	58.71
Merged-chr18-84851284-3	chr18	84850776	84851776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025797)	promoter-TSS (NM_025797)	-62.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	142.44	163.58	98.05	130.22	95.17	110.12	119.35	121.6	89.31
Merged-chr11-54522823-3	chr11	54522330	54523330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175258)	promoter-TSS (NM_175258)	-15.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	409.02	457.56	308.01	399.43	419.39	255.6	326.36	497.0	188.61
Merged-chr5-62854749-3	chr5	62854253	62855253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	40930.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	69.79	84.78	74.0	90.41	78.84	81.99	105.62	78.26	55.58
Merged-chr7-139224925-3	chr7	139224420	139225420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 6 of 8)	intron (NM_001143755, intron 6 of 8)	-11613.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	30.32	17.51	15.72	35.76	32.66	15.27	76.05	61.02	19.98
Merged-chr4-120952281-3	chr4	120951750	120952750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-549.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	152.17	164.04	107.29	163.28	139.95	139.86	118.29	147.68	93.05
Merged-chr3-135517050-1	chr3	135516550	135517550	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027288, intron 4 of 16)	MLT1F2|LTR|ERVL-MaLR	31439.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	2.86	2.3	3.7	21.59	14.93	8.04	2.11	2.65	2.5
Merged-chr7-116459293-3	chr7	116458766	116459766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15808.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	122.42	79.25	42.55	95.14	81.17	72.34	99.28	79.15	38.1
Merged-chr7-140954355-3	chr7	140953859	140954859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	1602.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	217.95	213.8	135.04	210.51	146.48	166.38	216.52	225.95	156.13
Merged-chr8-57541161-3	chr8	57540666	57541666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29323.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	156.74	151.14	65.67	132.24	102.17	100.47	124.63	118.5	64.95
Merged-chr10-8505836-3	chr10	8505314	8506314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13011.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	41.19	56.22	37.92	26.99	20.53	48.23	45.42	42.89	40.59
Merged-chr11-101425039-3	chr11	101424536	101425536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172566)	promoter-TSS (NM_172566)	-49.0	NM_172566	217201.0	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	89.81	90.31	87.87	95.14	87.7	94.85	91.89	89.76	85.56
Merged-chr8-71469104-3	chr8	71468627	71469627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294259)	promoter-TSS (NM_001294259)	-67.0	NM_001294259	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	170.47	104.6	138.74	151.81	74.17	77.97	111.96	99.93	63.7
Merged-chr6-115650032-3	chr6	115649539	115650539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	25849.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	222.53	241.45	123.94	207.81	149.75	144.68	189.06	259.99	116.79
Merged-chr10-62507888-3	chr10	62507387	62508387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-130.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	307.19	303.66	148.92	275.28	278.97	221.85	270.38	326.76	127.4
Merged-chr4-124851264-3	chr4	124850776	124851776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	517.0	NM_153566	230734.0	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	266.58	205.05	254.36	202.42	175.41	179.24	233.42	111.87	132.4
Merged-chr10-40097657-3	chr10	40097138	40098138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	MTC-int|LTR|ERVL-MaLR	44616.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	57.78	59.44	77.7	76.24	51.32	75.56	86.61	47.75	44.97
Merged-chr7-141123157-3	chr7	141122656	141123656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5350.0	NM_178381	71345.0	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	24.03	28.11	21.27	24.29	20.06	31.35	46.47	31.84	21.23
Merged-chr4-53469229-3	chr4	53468735	53469735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	L1MB8|LINE|L1	28822.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	9.72	16.13	5.55	19.57	9.33	9.65	19.01	10.17	18.74
Merged-chr5-101949448-3	chr5	101948940	101949940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 9 of 66)	intron (NM_172882, intron 9 of 66)	120481.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	84.09	54.37	36.07	70.17	37.32	32.96	100.34	91.09	42.47
Merged-chr12-80643842-3	chr12	80643339	80644339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026244)	promoter-TSS (NM_026244)	272.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	188.21	190.76	174.82	174.75	161.41	172.01	172.16	151.22	103.05
Merged-chr13-54687767-3	chr13	54687262	54688262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146025)	promoter-TSS (NM_001146025)	46.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	389.57	382.45	273.79	348.15	340.08	243.55	335.87	336.93	171.75
Merged-chr10-22282999-2	chr10	22282499	22283499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177775, intron 1 of 5)	intron (NM_001177775, intron 1 of 5)	9525.0	NM_001177775	667281.0	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	29.75	25.8	22.2	34.41	32.66	44.21	8.45	6.63	5.0
Merged-chr12-40037486-3	chr12	40036999	40037999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-123.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	181.34	173.72	91.57	203.76	169.81	101.28	137.3	124.69	68.07
Merged-chr8-36094924-3	chr8	36094417	36095417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	89.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	44.05	18.89	7.4	48.58	34.06	21.7	19.01	16.36	6.87
Merged-chr2-153161302-3	chr2	153160804	153161804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133847)	promoter-TSS (NM_133847)	3.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	270.58	227.17	187.77	248.97	178.21	173.62	234.47	250.71	129.28
Merged-chr15-76723859-3	chr15	76723362	76724362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-17.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	89.24	69.58	57.35	89.74	66.71	63.5	119.35	130.44	56.83
Merged-chr5-107900635-3	chr5	107900148	107901148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016980, intron 1 of 7)	CpG	120.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	113.27	109.21	75.85	92.44	110.56	98.87	115.12	95.51	54.33
Merged-chr3-133092485-3	chr3	133091978	133092978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026231)	promoter-TSS (NM_026231)	-439.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	299.76	351.58	235.86	313.07	344.75	312.67	301.01	391.76	173.62
Merged-chr8-25518748-3	chr8	25518240	25519240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010206)	promoter-TSS (NM_010206)	-19.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	11.44	4.61	9.25	8.77	6.53	3.22	16.9	8.84	13.74
Merged-chr8-11008994-3	chr8	11008477	11009477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081212)	promoter-TSS (NM_001081212)	-547.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	279.16	200.44	204.41	307.0	202.93	200.14	215.46	107.89	99.3
Merged-chr9-104263068-3	chr9	104262575	104263575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163026)	promoter-TSS (NM_001163026)	-145.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	162.46	153.44	178.52	162.61	163.28	126.19	171.1	195.0	120.53
Merged-chr3-69679957-3	chr3	69679471	69680471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42084.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	37.18	29.95	36.07	66.8	19.13	53.85	61.26	54.39	46.22
Merged-chr4-133494615-3	chr4	133494128	133495128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	3922.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	104.69	83.4	37.0	129.55	63.45	111.73	74.99	87.55	74.32
Merged-chr7-64356773-3	chr7	64356277	64357277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	17318.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	68.07	75.57	63.82	90.41	71.38	96.45	126.74	155.64	48.71
Merged-chr10-117215951-3	chr10	117215457	117216457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	8550.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	152.17	171.87	115.62	136.97	149.28	157.54	161.6	192.34	76.82
Merged-chr19-43523633-3	chr19	43523115	43524115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	990.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	196.21	182.93	122.09	236.83	174.94	94.85	203.84	207.38	109.92
Merged-chr13-112799984-3	chr13	112799508	112800508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008247)	promoter-TSS (NM_008247)	-769.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	38.33	40.55	43.47	68.15	60.18	53.85	79.21	130.88	79.32
Merged-chr12-85338994-1	chr12	85338494	85339494	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145138, intron 1 of 21)	CpG	368.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	269.44	217.03	164.64	255.04	198.73	194.52	279.89	243.19	161.75
Merged-chr13-35783172-3	chr13	35782684	35783684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	intron (NM_001123386, intron 1 of 6)	41782.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	57.78	69.12	31.45	58.03	53.65	56.27	71.82	71.63	29.98
Merged-chr4-34643357-3	chr4	34642856	34643856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151507, intron 8 of 19)	intron (NR_151507, intron 8 of 19)	28399.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	46.91	85.71	40.7	82.32	86.3	42.6	101.39	103.47	44.97
Merged-chr17-34287911-3	chr17	34287417	34288417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010378)	promoter-TSS (NM_010378)	-146.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	210.52	120.73	178.52	74.22	70.44	71.54	199.62	239.65	84.31
Merged-chr9-123475792-3	chr9	123475263	123476263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-2938.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	22.31	23.5	21.27	17.54	18.66	27.33	27.46	26.97	14.36
Merged-chr16-17233569-3	chr16	17233055	17234055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-32.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	180.2	119.8	103.59	191.62	165.61	108.51	116.18	90.2	52.46
Merged-chr1-75141690-3	chr1	75141166	75142166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356264)	promoter-TSS (NM_001356264)	25.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	239.69	269.1	172.97	203.76	289.24	252.39	235.53	264.42	161.13
Merged-chr1-157458519-3	chr1	157458007	157459007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356419)	promoter-TSS (NM_001356419)	-61.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	17.16	12.9	5.55	11.47	16.79	8.84	17.96	21.22	16.24
Merged-chr18-37956348-3	chr18	37955818	37956818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153793, intron 1 of 7)	intron (NM_153793, intron 1 of 7)	759.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	6.86	9.22	14.8	17.54	6.53	10.45	14.79	21.22	11.24
Merged-chr4-42880580-3	chr4	42880076	42881076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6342.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	45.76	59.44	57.35	49.93	43.85	65.91	27.46	21.22	32.48
Merged-chr11-75164954-3	chr11	75164452	75165452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001002764)	TTS (NM_001002764)	3200.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	90.38	51.15	69.37	55.33	45.72	70.73	50.7	34.05	37.47
Merged-chr1-136141684-3	chr1	136141172	136142172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	10282.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	402.73	309.65	260.84	416.98	235.12	278.11	383.4	446.15	154.88
Merged-chr2-126515204-3	chr2	126514725	126515725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-15378.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	10.87	12.9	9.25	10.8	8.86	6.43	7.39	4.42	5.62
Merged-chr16-35769501-3	chr16	35768998	35769998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175111)	promoter-TSS (NM_175111)	-142.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	419.89	411.02	307.08	497.27	391.4	318.3	400.29	407.24	204.22
Merged-chr1-66863337-3	chr1	66862839	66863839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-30.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	117.84	82.02	81.4	239.52	222.06	156.74	188.0	176.42	144.89
Merged-chr14-73143391-3	chr14	73142866	73143866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 1 of 15)	CpG	581.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	314.63	223.94	179.44	286.75	185.67	200.14	335.87	273.7	164.25
Merged-chr11-97531913-3	chr11	97531404	97532404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018873, exon 12 of 20)	exon (NM_018873, exon 12 of 20)	-31564.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	13.16	3.69	1.85	8.1	4.67	1.61	4.22	1.77	0.0
Merged-chr11-29130724-3	chr11	29130220	29131220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027869)	promoter-TSS (NM_027869)	-31.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	66.36	47.46	22.2	68.82	46.18	62.7	108.79	81.8	43.72
Merged-chrUn_JH584304-26559-1	chrUn_JH584304	26059	27059	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33130.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	166.88	105.24	0.0
Merged-chr7-105736509-3	chr7	105735995	105736995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	89.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	203.65	189.84	163.72	177.45	184.74	138.25	199.62	169.79	106.79
Merged-chr1-86492905-3	chr1	86492416	86493416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33641.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	40.04	38.71	33.3	34.41	32.19	45.01	36.97	29.18	23.11
Merged-chr10-81524431-3	chr10	81523877	81524877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-152.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	85.81	89.39	133.19	100.53	128.76	90.02	142.59	164.49	53.71
Merged-chr17-21383763-3	chr17	21383263	21384263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172486)	promoter-TSS (NM_172486)	15.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	29.75	31.33	27.75	35.09	41.52	58.68	62.31	60.58	29.35
Merged-chr12-20921189-3	chr12	20920661	20921661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-105382.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	10.3	11.52	25.9	10.8	6.53	14.47	13.73	6.63	13.74
Merged-chr2-167496564-3	chr2	167496061	167497061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030743, intron 1 of 7)	L3|LINE|CR1	-3687.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	295.75	246.06	139.67	230.08	207.13	153.52	212.29	261.76	118.04
Merged-chr5-114916921-3	chr5	114916421	114917421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6319.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	5.72	7.37	6.47	11.47	7.46	8.04	8.45	5.75	6.25
Merged-chr11-107327556-3	chr11	107327061	107328061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-138180.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	215.66	168.65	81.4	306.32	192.67	131.02	159.48	197.65	64.33
Merged-chr8-47714136-3	chr8	47713645	47714645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-214.0	NM_172407	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	161.89	153.44	172.97	158.56	155.35	179.24	252.43	193.67	106.79
Merged-chr10-37400505-3	chr10	37400001	37401001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261575.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	65.79	94.92	62.9	78.27	65.78	68.32	83.44	87.99	51.21
Merged-chr1-154118126-3	chr1	154117640	154118640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-83047.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	148.16	141.46	130.42	154.51	120.36	145.49	115.12	130.88	98.05
Merged-chr10-93268520-3	chr10	93268028	93269028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	L1MB3|LINE|L1	42631.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	18.31	29.49	31.45	26.99	35.45	32.96	27.46	23.43	31.85
Merged-chr19-34922311-3	chr19	34921819	34922819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-39.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	45.76	54.37	40.7	53.98	68.58	67.52	81.33	76.94	41.84
Merged-chr3-37313608-3	chr3	37313109	37314109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001255992, intron 1 of 1)	L2|LINE|L2	1055.0	NM_001008502	241950.0	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	42.9	52.07	39.77	22.94	31.72	29.74	17.96	23.88	27.48
Merged-chr3-28805456-3	chr3	28804961	28805961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-47.0	NR_154889	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	335.8	339.6	194.24	298.9	381.14	255.6	258.77	286.97	150.51
Merged-chr5-145114753-3	chr5	145114234	145115234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	CpG	478.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	309.48	317.48	324.66	297.55	299.5	295.79	287.28	325.44	185.48
Merged-chr10-10460335-1	chr10	10459835	10460835	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	L1MEd|LINE|L1	11979.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	65.21	87.55	49.02	40.48	44.78	57.87	113.01	137.96	84.94
Merged-chr13-8885765-3	chr13	8885238	8886238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145360, exon 1 of 5)	5' UTR (NM_145360, exon 1 of 5)	132.0	NM_145360	319554.0	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik|IPPI1	isopentenyl-diphosphate delta isomerase	protein-coding	151.02	193.99	106.37	119.43	142.75	129.41	145.75	182.62	111.79
Merged-chr16-32124542-3	chr16	32124057	32125057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24755.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	127.0	93.08	96.2	93.79	68.11	78.77	70.76	81.8	59.33
Merged-chr13-40953426-3	chr13	40952928	40953928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	MER20|DNA|hAT-Charlie	35794.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	15.45	22.12	3.7	20.24	14.46	9.65	11.62	14.59	2.5
Merged-chr6-40576513-3	chr6	40576017	40577017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	5129.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	64.64	54.37	26.82	35.76	31.26	69.93	41.19	42.89	48.09
Merged-chr13-95869014-3	chr13	95868509	95869509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	22913.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	20.59	17.05	9.25	20.24	9.33	16.08	64.43	68.54	28.1
Merged-chr8-10840743-1	chr8	10840243	10841243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41711.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	39.47	21.2	20.35	40.48	19.59	11.25	11.62	7.07	3.75
Merged-chr2-129295729-1	chr2	129295229	129296229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181589, intron 2 of 8)	intron (NM_181589, intron 2 of 8)	1483.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	4.58	2.76	1.85	7.42	2.33	4.82	5.28	0.44	3.12
Merged-chr6-50252879-3	chr6	50252371	50253371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018769, intron 1 of 9)	MLTR11B|LTR|ERVK	8898.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	43.48	43.77	49.02	53.98	46.18	34.56	20.07	33.6	31.23
Merged-chr10-80343013-4	chr10	80342546	80343546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104340, intron 7 of 11)	G-rich|Low_complexity|Low_complexity	5402.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	7.44	6.45	1.85	17.54	7.0	3.22	12.67	5.31	3.75
Merged-chr17-17901877-3	chr17	17901350	17902350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14026.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	66.93	78.79	52.72	49.25	37.79	36.97	84.49	77.38	53.08
Merged-chr19-32181408-3	chr19	32180918	32181918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	29595.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	128.71	75.57	24.05	199.72	172.61	79.58	61.26	47.75	19.36
Merged-chr5-139252631-3	chr5	139252113	139253113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	289.0	NM_026269	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	141.3	111.05	103.59	133.59	64.38	75.56	136.25	95.51	77.44
Merged-chr8-84237765-3	chr8	84237244	84238244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-702.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	367.26	330.38	221.99	360.97	287.84	225.86	322.14	385.57	151.14
Merged-chr13-55895772-3	chr13	55895290	55896290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64365.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	23.45	15.21	1.85	10.12	10.73	4.82	13.73	6.63	5.0
Merged-chr11-109417687-2	chr11	109417185	109418185	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8261.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	4.58	4.61	0.0	61.4	44.32	25.72	31.69	27.41	7.49
Merged-chr10-62506388-3	chr10	62505871	62506871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	1386.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	342.09	380.15	142.44	375.14	381.14	229.88	214.41	372.3	122.41
Merged-chr11-44378068-3	chr11	44377557	44378557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22006.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	94.96	96.76	51.8	90.41	72.78	53.05	109.84	70.3	52.46
Merged-chr2-22752706-3	chr2	22752203	22753203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21624.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	82.95	105.98	89.72	59.38	32.66	57.07	76.05	84.45	71.2
Merged-chr2-61578573-3	chr2	61578087	61579087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011529)	promoter-TSS (NM_011529)	1.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	310.05	342.82	140.59	275.28	268.24	190.5	302.07	450.13	149.26
Merged-chr10-76032563-3	chr10	76032051	76033051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177475)	promoter-TSS (NM_177475)	-61.0	NM_177475	64453.0	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	39.47	27.19	16.65	46.56	38.25	27.33	53.87	30.95	13.12
Merged-chr8-39619982-3	chr8	39619494	39620494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031195, exon 5 of 9)	exon (NM_031195, exon 5 of 9)	22684.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	76.08	99.99	47.17	84.34	83.97	77.97	84.49	104.35	60.58
Merged-chr5-144252337-3	chr5	144251839	144252839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	-2886.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	34.9	17.51	18.5	24.96	14.46	14.47	20.07	11.05	11.24
Merged-chr4-6383623-3	chr4	6383118	6384118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016807, intron 4 of 8)	RLTR49|LTR|ERVK	17938.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	116.7	105.06	74.0	126.85	79.77	81.18	142.59	118.94	64.95
Merged-chr15-101113393-3	chr15	101112898	101113898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	95.53	86.63	83.25	108.63	79.77	92.44	107.73	115.85	53.71
Merged-chr1-180231807-3	chr1	180231293	180232293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128605, intron 7 of 10)	L1MB3|LINE|L1	14157.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	12.59	5.53	4.62	10.12	9.8	4.82	13.73	6.19	13.74
Merged-chr7-28277706-3	chr7	28277202	28278202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177427)	promoter-TSS (NM_001177427)	-4.0	NM_001177427	434156.0	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	31.46	26.26	24.97	31.04	32.66	41.8	27.46	19.46	24.98
Merged-chr19-37963897-1	chr19	37963397	37964397	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 19 of 53)	intron (NM_001302140, intron 19 of 53)	79680.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	113.84	98.15	78.62	99.18	78.37	104.49	107.73	99.49	83.06
Merged-chr10-37106417-3	chr10	37105927	37106927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32499.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	6.86	3.69	0.0	3.37	1.87	1.61	7.39	7.07	6.25
Merged-chr2-35132265-3	chr2	35131777	35132777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290635)	promoter-TSS (NM_001290635)	43.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	130.43	122.57	92.5	94.46	116.16	115.75	87.66	111.43	68.7
Merged-chr10-86990051-3	chr10	86989547	86990547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 3 of 68)	intron (NM_138673, intron 3 of 68)	17895.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	106.4	68.2	37.92	149.79	79.31	47.42	134.14	116.73	28.1
Merged-chr1-191325871-3	chr1	191325381	191326381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025864)	promoter-TSS (NM_025864)	-84.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	136.72	94.46	117.47	141.69	102.17	113.33	157.37	129.55	76.82
Merged-chr18-82856607-3	chr18	82856117	82857117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_125720, exon 2 of 3)	non-coding (NR_125720, exon 2 of 3)	720.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	155.6	199.52	65.67	141.69	127.36	123.78	149.98	254.69	89.31
Merged-chr16-91647054-3	chr16	91646562	91647562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178880)	promoter-TSS (NM_178880)	-90.0	NM_001357351	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	442.2	454.33	316.33	378.52	384.87	285.34	324.25	402.81	234.82
Merged-chr5-150118587-3	chr5	150118140	150119140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	99965.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	6.29	1.38	8.32	17.54	2.33	16.08	28.52	10.61	8.12
Merged-chr11-80428586-3	chr11	80428082	80429082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178616)	promoter-TSS (NM_178616)	-33.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	181.91	157.59	149.84	161.26	181.47	158.35	143.64	121.6	108.67
Merged-chr10-37228092-3	chr10	37227609	37228609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89183.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	94.96	80.18	47.17	92.44	57.38	63.5	86.61	80.92	32.48
Merged-chr3-75957023-3	chr3	75956529	75957529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175193)	promoter-TSS (NM_175193)	-80.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	56.63	59.9	39.77	60.05	42.45	72.34	48.58	33.6	49.34
Merged-chr2-116975999-3	chr2	116975480	116976480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	75828.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	371.83	393.97	267.31	319.14	304.16	249.17	339.04	366.11	232.95
Merged-chr16-4896812-3	chr16	4896323	4897323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	10723.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	14.3	16.13	12.95	20.24	19.59	23.31	13.73	13.27	12.49
Merged-chr4-109676626-3	chr4	109676137	109677137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	10.0	NM_007983	14084.0	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	268.29	271.86	180.37	246.27	238.85	154.33	272.5	260.44	144.27
Merged-chr3-95217974-3	chr3	95217457	95218457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172512)	promoter-TSS (NM_172512)	-15.0	NM_029885	213054.0	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	247.7	281.08	164.64	197.69	229.06	179.24	259.82	294.48	142.39
Merged-chr17-66518997-3	chr17	66518496	66519496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	674.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	166.47	146.53	118.39	111.33	107.76	97.26	170.05	122.92	78.07
Merged-chr4-53159441-2	chr4	53158929	53159929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	466.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	354.1	271.4	189.62	359.62	289.24	331.16	365.44	432.88	148.64
Merged-chr11-115066955-3	chr11	115066456	115067456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4917.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	79.52	50.23	42.55	85.69	43.39	81.18	107.73	110.98	62.45
Merged-chr1-51930806-3	chr1	51930318	51931318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14840.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	39.47	40.55	43.47	41.16	26.59	55.46	35.91	29.63	36.85
Merged-chr11-68503015-3	chr11	68502510	68503510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-9.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	30.32	33.18	20.35	31.71	19.59	43.4	48.58	30.07	46.84
Merged-chr13-73331049-3	chr13	73330554	73331554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053163)	promoter-TSS (NM_053163)	45.0	NM_053163	94066.0	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	208.23	245.14	125.79	261.79	260.78	152.72	247.15	247.61	106.17
Merged-chr5-124052314-3	chr5	124051801	124052801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20041.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	150.45	129.02	81.4	245.6	184.74	147.9	137.3	135.3	44.34
Merged-chr8-33471283-1	chr8	33470783	33471783	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13028.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.57	0.46	1.85	1.35	4.2	3.22	25.35	29.18	7.49
Merged-chr15-38472848-3	chr15	38472336	38473336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17711.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	162.46	146.07	113.77	158.56	119.89	138.25	190.11	143.26	98.05
Merged-chrX-93757103-3	chrX	93756608	93757608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74987.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	205.94	261.73	86.95	190.95	219.73	135.04	159.48	152.11	87.43
Merged-chr8-61561578-3	chr8	61561068	61562068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29601.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	38.9	48.84	20.35	32.39	14.46	33.76	28.52	18.13	8.74
Merged-chr8-107293406-3	chr8	107292900	107293900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133957)	promoter-TSS (NM_133957)	-70.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	139.01	169.11	164.64	169.35	167.48	208.18	176.38	193.23	118.66
Merged-chr17-34647106-3	chr17	34646604	34647604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	-42.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	81.8	84.78	61.97	136.29	105.9	109.32	67.6	83.13	48.09
Merged-chr10-93070841-3	chr10	93070349	93071349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	10747.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	29.17	15.67	15.72	22.27	16.33	28.13	34.85	30.51	18.74
Merged-chr10-42504467-3	chr10	42503954	42504954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	2400.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	51.48	67.27	41.62	45.21	36.39	48.23	40.14	55.27	40.59
Merged-chr11-75153384-3	chr11	75152873	75153873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	14779.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	205.94	193.53	119.32	230.08	181.01	188.89	220.74	193.23	107.42
Merged-chr10-78487860-3	chr10	78487359	78488359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22911.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	13.16	9.68	9.25	17.54	5.6	3.22	5.28	1.77	5.0
Merged-chr2-69719566-3	chr2	69719065	69720065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-3523.0	NM_001081086	228005.0	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	64.64	67.74	56.42	45.21	38.72	77.16	45.42	48.2	58.71
Merged-chr6-147475922-3	chr6	147475434	147476434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025911)	promoter-TSS (NM_025911)	63.0	NM_001355715	67015.0	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	184.77	170.03	135.97	209.16	205.73	173.62	114.07	118.5	65.58
Merged-chr11-113766519-3	chr11	113766016	113767016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14701.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	9.15	7.37	12.02	13.49	9.8	18.49	36.97	21.22	18.11
Merged-chr2-57182444-1	chr2	57181944	57182944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040356)	promoter-TSS (NR_040356)	613.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	30.32	35.48	27.75	43.18	43.39	14.47	39.08	51.73	24.98
Merged-chr3-95650759-3	chr3	95650250	95651250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7971.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	317.49	216.57	150.77	311.04	215.06	237.12	305.24	350.2	161.75
Merged-chr4-133169693-3	chr4	133169181	133170181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25974.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	226.53	212.42	143.37	254.37	138.55	178.44	209.12	291.39	115.54
Merged-chr5-16470079-3	chr5	16469600	16470600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83395.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	102.97	123.49	36.07	99.86	88.64	64.3	79.21	105.24	64.95
Merged-chrX-168673515-3	chrX	168673018	168674018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	CpG	384.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	183.06	174.18	116.54	155.86	144.62	95.65	118.29	152.99	97.43
Merged-chr10-7780989-3	chr10	7780469	7781469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346750)	promoter-TSS (NM_001346750)	-52.0	NM_001346750	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	89.81	87.09	28.67	89.74	74.64	53.85	90.83	87.99	48.71
Merged-chr2-170202174-3	chr2	170201675	170202675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59500.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	50.91	42.39	38.85	33.74	32.66	24.11	47.53	32.28	38.72
Merged-chr17-78200097-3	chr17	78199575	78200575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015800)	promoter-TSS (NM_015800)	-173.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	51.48	59.9	48.1	56.68	47.58	75.56	52.81	36.7	44.34
Merged-chr1-152800203-3	chr1	152799739	152800739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010877)	promoter-TSS (NM_010877)	86.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	180.2	199.98	112.84	166.66	172.61	147.9	167.93	244.08	118.04
Merged-chr10-60274095-3	chr10	60273580	60274580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3548.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	103.54	89.85	86.95	134.27	86.77	135.04	91.89	121.15	69.95
Merged-chr8-69832459-3	chr8	69831965	69832965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024954)	promoter-TSS (NM_001024954)	-159.0	NM_001357308	80720.0	Mm.210823	NM_001024954	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	17.73	6.45	8.32	1.35	4.2	0.0	9.51	11.05	5.62
Merged-chr5-146806056-3	chr5	146805536	146806536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11080.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	180.77	176.94	132.27	188.92	128.76	140.66	192.23	225.95	115.54
Merged-chr4-62266297-3	chr4	62265818	62266818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-20111.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	16.02	15.21	5.55	14.17	8.4	0.0	22.18	14.59	16.24
Merged-chr13-6461597-3	chr13	6461071	6462071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86586.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	13.73	14.28	19.42	18.22	14.0	24.92	6.34	4.86	10.62
Merged-chr8-13677682-3	chr8	13677176	13678176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-89.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	168.18	185.7	142.44	197.02	174.47	158.35	148.92	173.33	96.8
Merged-chr11-101982030-3	chr11	101981536	101982536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	2755.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	323.21	289.83	143.37	211.86	148.82	154.33	231.3	250.71	154.26
Merged-chr19-6909671-3	chr19	6909188	6910188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026306)	promoter-TSS (NM_026306)	-10.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	558.9	489.35	363.51	481.07	463.71	346.43	441.49	558.46	276.67
Merged-chr17-25015959-3	chr17	25015483	25016483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-103.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	271.73	244.68	205.34	229.4	231.39	163.17	198.56	232.14	138.65
Merged-chr11-117987296-3	chr11	117986790	117987790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	CpG	433.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	315.2	298.59	269.16	324.54	275.71	225.06	276.72	229.93	159.25
Merged-chr16-20425937-3	chr16	20425454	20426454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	CpG	440.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	73.22	79.72	89.72	80.97	90.04	88.42	108.79	96.39	57.46
Merged-chr4-129625320-4	chr4	129624857	129625857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199695)	TTS (NM_001199695)	-1449.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	86.95	70.5	65.67	76.24	60.65	78.77	134.14	154.32	85.56
Merged-chr9-20952815-4	chr9	20952304	20953304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199433)	promoter-TSS (NM_001199433)	175.0	NM_010066	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	45.19	46.54	72.15	53.3	62.05	64.3	71.82	57.48	38.1
Merged-chr16-36633769-3	chr16	36633273	36634273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	32304.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	119.56	77.87	97.12	89.74	49.45	101.28	137.3	102.58	93.05
Merged-chrX-7864743-3	chrX	7864236	7865236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-13570.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	40.04	53.91	49.95	32.39	29.39	42.6	40.14	51.73	19.36
Merged-chr7-45277446-3	chr7	45276947	45277947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5426.0	NM_001033176	76713.0	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	70.36	29.49	25.9	56.0	37.32	22.51	52.81	48.2	18.74
Merged-chr14-19771451-3	chr14	19770964	19771964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	20207.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	80.09	91.24	58.27	70.85	55.98	77.97	52.81	51.29	39.97
Merged-chr7-126144517-3	chr7	126144027	126145027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	MTD|LTR|ERVL-MaLR	55974.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	81.8	99.07	87.87	73.54	48.98	79.58	63.37	84.9	58.08
Merged-chr2-118540429-3	chr2	118539916	118540916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	4171.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	72.65	64.05	57.35	111.33	79.31	54.66	214.41	247.17	99.92
Merged-chr15-81960956-3	chr15	81960457	81961457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282040)	promoter-TSS (NM_001282040)	-27.0	NM_001282041	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	20.02	23.5	13.87	32.39	41.52	28.13	44.36	35.37	19.36
Merged-chr10-95515681-2	chr10	95515167	95516167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	CpG	505.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	402.15	387.06	314.48	394.04	338.22	308.65	337.98	268.84	256.68
Merged-chr10-7955437-3	chr10	7954950	7955950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	CpG	673.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	269.44	223.48	245.11	228.05	140.89	221.85	267.21	174.21	148.64
Merged-chr8-64733746-3	chr8	64733250	64734250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025436)	promoter-TSS (NM_025436)	-172.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	38.33	58.06	13.87	45.88	52.25	32.15	53.87	32.28	26.85
Merged-chr17-23924838-3	chr17	23924343	23925343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7385.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	50.34	53.91	48.1	53.98	47.12	57.07	64.43	56.6	57.46
Merged-chr14-61548763-3	chr14	61548268	61549268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310603, intron 2 of 3)	ORR1F|LTR|ERVL-MaLR	8118.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	26.31	45.62	29.6	62.07	37.32	33.76	41.19	46.43	38.72
Merged-chr2-98666870-1	chr2	98666370	98667370	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1199213.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	16319.55	60736.88	9799.88	21891.21	68026.73	10204.09	46747.82	35532.56	11139.7
Merged-chr1-138127018-3	chr1	138126518	138127518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48108.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	47.48	51.61	37.92	62.75	49.92	56.27	57.03	47.31	24.98
Merged-chrX-16618535-3	chrX	16618057	16619057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1141.0	NM_173740	17161.0	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	12.01	7.83	8.32	29.69	26.12	45.01	6.34	7.96	0.0
Merged-chr6-90369530-3	chr6	90369024	90370024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030260)	promoter-TSS (NM_030260)	30.0	NM_030260	80292.0	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	66.36	46.08	58.27	61.4	56.45	49.03	82.38	44.22	29.35
Merged-chr1-34459697-3	chr1	34459201	34460201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011206)	promoter-TSS (NM_011206)	-45.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	50.34	33.64	16.65	30.36	33.59	16.08	24.29	26.53	18.74
Merged-chr1-9945346-3	chr1	9944855	9945855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1237.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	32.04	44.7	22.2	28.34	21.46	16.88	51.75	43.33	37.47
Merged-chr15-74930504-3	chr15	74930002	74931002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24549.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	86.95	105.52	79.55	49.93	56.91	68.32	128.85	155.2	66.82
Merged-chr4-72379691-3	chr4	72379203	72380203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178459.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	213.95	217.49	154.47	223.33	167.48	200.14	181.66	227.72	132.4
Merged-chr10-118883495-3	chr10	118882978	118883978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14575.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	100.68	86.17	73.07	85.69	46.65	93.24	76.05	56.6	45.59
Merged-chr11-88864666-3	chr11	88864177	88865177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042541)	promoter-TSS (NM_001042541)	-91.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	29.75	18.89	19.42	23.62	12.6	10.45	15.84	5.31	7.49
Merged-chr18-60804326-1	chr18	60803826	60804826	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	B1_Mm|SINE|Alu	477.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	77.23	43.77	37.92	72.19	57.85	75.56	255.6	339.14	126.78
Merged-chr7-80803363-3	chr7	80802837	80803837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016721)	promoter-TSS (NM_016721)	-6.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	209.94	188.0	164.64	221.98	191.73	184.87	163.71	178.19	127.4
Merged-chr11-103382087-3	chr11	103381602	103382602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 5 of 11)	intron (NM_183034, intron 5 of 11)	-18410.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	202.51	177.4	84.17	214.56	192.2	122.98	158.43	185.27	104.92
Merged-chr13-45389667-3	chr13	45389170	45390170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153789)	promoter-TSS (NM_153789)	-72.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	155.6	89.85	85.1	139.67	99.83	125.39	147.87	106.12	84.94
Merged-chr8-22883040-1	chr8	22882540	22883540	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	RSINE1|SINE|B4	23501.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	16.02	11.98	10.17	12.14	14.46	12.86	24.29	15.48	12.49
Merged-chr16-44757906-3	chr16	44757415	44758415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7821.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	110.98	117.04	40.7	142.37	120.36	86.01	105.62	134.42	61.2
Merged-chr5-43872050-3	chr5	43871559	43872559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	3250.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	64.07	79.25	49.95	67.47	52.25	94.04	108.79	82.69	61.2
Merged-chr6-57790742-3	chr6	57790234	57791234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	34391.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	71.51	68.2	37.92	60.72	57.38	56.27	89.78	91.97	48.71
Merged-chr16-33573934-3	chr16	33573440	33574440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	MIR3|SINE|MIR	55345.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	93.82	75.57	44.4	64.77	51.78	48.23	68.65	79.15	51.84
Merged-chr7-130646179-3	chr7	130645668	130646668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	CpG	-46388.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	255.14	295.36	143.37	269.89	256.11	137.45	173.21	149.89	81.19
Merged-chr5-140830606-3	chr5	140830118	140831118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010302)	promoter-TSS (NM_010302)	-187.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	33.18	27.19	44.4	53.98	23.79	29.74	48.58	16.36	29.98
Merged-chr4-126537009-3	chr4	126536495	126537495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	49.2	69.12	67.52	49.25	44.78	54.66	47.53	56.16	40.59
Merged-chr12-82169322-3	chr12	82168825	82169825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167983)	promoter-TSS (NM_001167983)	-691.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	62.35	34.56	28.67	58.7	35.92	36.97	51.75	42.45	30.6
Merged-chr6-129363435-3	chr6	129362945	129363945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 5 of 5)	L1_Mus2|LINE|L1	13201.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	26.89	32.72	25.9	43.86	23.79	40.19	32.74	21.22	24.98
Merged-chrX-169981137-1	chrX	169980637	169981637	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 4 of 9)	intron (NM_010797, intron 4 of 9)	-2220.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.57	0.0	0.0	0.0	0.0	0.0	247.15	395.3	220.46
Merged-chr5-75044605-3	chr5	75044091	75045091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028850)	promoter-TSS (NM_028850)	50.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	195.64	180.17	145.22	192.29	156.75	97.26	212.29	145.92	111.17
Merged-chr9-37489107-3	chr9	37488610	37489610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146222)	promoter-TSS (NM_146222)	-211.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	232.83	291.22	166.49	255.72	238.39	211.4	285.17	285.64	170.5
Merged-chr4-46553968-3	chr4	46553478	46554478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	12462.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	100.68	119.34	129.49	97.83	90.5	131.02	134.14	168.91	105.55
Merged-chr16-44187341-1	chr16	44186841	44187841	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	13944.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	10.3	21.2	20.35	9.45	14.0	4.82	16.9	12.82	6.25
Merged-chr2-35342811-1	chr2	35342311	35343311	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5802.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	4.0	7.83	1.85	8.77	5.13	8.84	6.34	4.86	4.37
Merged-chr8-35639231-1	chr8	35638731	35639731	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	MLT1A|LTR|ERVL-MaLR	-50211.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.57	0.0	0.92	0.67	0.0	0.0	35.91	23.88	24.98
Merged-chr19-36834268-3	chr19	36833791	36834791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	59.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	306.05	234.08	207.19	365.7	228.12	205.77	362.27	255.13	131.78
Merged-chr13-3523645-3	chr13	3523131	3524131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-14444.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	13.73	11.52	12.95	12.14	6.53	14.47	14.79	10.17	11.24
Merged-chr15-58732166-3	chr15	58731655	58732655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91272.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	32.61	32.25	16.65	35.09	30.32	29.74	32.74	34.49	19.98
Merged-chr15-78900658-3	chr15	78900129	78901129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316685, intron 1 of 17)	intron (NM_001316685, intron 1 of 17)	861.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	114.98	105.06	117.47	78.27	83.51	97.26	78.16	94.18	68.7
Merged-chr6-42265613-3	chr6	42265108	42266108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	623.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	112.12	177.4	100.82	116.73	117.09	95.65	126.74	175.1	83.06
Merged-chr10-120163710-3	chr10	120163224	120164224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	37873.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	23.45	35.48	36.07	35.09	29.39	23.31	70.76	52.62	43.72
Merged-chr4-109476677-3	chr4	109476178	109477178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013876)	promoter-TSS (NM_013876)	-173.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	179.05	132.25	86.95	179.47	137.15	111.73	202.79	114.96	81.81
Merged-chr12-111035350-3	chr12	111034861	111035861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4437.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	20.02	21.66	23.12	17.54	15.86	17.68	24.29	26.53	19.36
Merged-chr6-49319226-3	chr6	49318726	49319726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175098)	promoter-TSS (NM_175098)	-48.0	NM_175098	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	51.48	61.28	29.6	63.42	60.65	31.35	51.75	59.25	41.22
Merged-chr2-181193213-3	chr2	181192700	181193700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5953.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	38.33	38.25	51.8	37.11	38.25	37.78	53.87	61.46	43.09
Merged-chr5-99360344-3	chr5	99359835	99360835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-107408.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	139.01	144.69	112.84	143.71	121.76	143.07	164.76	149.45	111.79
Merged-chr10-75675825-3	chr10	75675336	75676336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-31828.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	85.81	111.51	60.12	80.29	95.17	70.73	64.43	80.03	52.46
Merged-chr6-124805772-3	chr6	124805260	124806260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2901.0	NM_001306051	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	235.11	203.21	120.24	263.81	219.26	203.36	167.93	164.49	104.3
Merged-chr11-83649535-3	chr11	83649030	83650030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011337)	promoter-TSS (NM_011337)	-152.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	204.8	179.25	118.39	210.51	172.14	160.76	190.11	201.63	133.65
Merged-chr17-70849196-3	chr17	70848706	70849706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	584.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	335.22	350.66	256.21	362.32	257.98	266.86	279.89	347.1	181.74
Merged-chr8-128078892-3	chr8	128078391	128079391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	199334.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	38.9	36.86	33.3	36.43	22.86	28.94	64.43	53.94	44.97
Merged-chr1-177796106-3	chr1	177795604	177796604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007422, intron 1 of 12)	CpG	405.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	134.43	120.73	105.44	120.1	146.95	109.32	175.33	136.63	82.44
Merged-chr3-51416642-3	chr3	51416144	51417144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	CpG	628.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	357.53	348.81	292.29	260.44	302.3	310.26	327.42	269.72	199.22
Merged-chr2-32495476-3	chr2	32494993	32495993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39866.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	188.21	134.09	134.12	231.43	173.07	175.23	223.91	235.68	91.81
Merged-chr5-150595566-3	chr5	150595059	150596059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1034.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	229.39	282.92	190.54	188.25	176.34	118.96	180.61	276.8	121.78
Merged-chr2-169777416-1	chr2	169776916	169777916	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	143770.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.72	1.84	1.85	1.35	0.47	2.41	23.24	14.15	9.37
Merged-chr2-27763585-3	chr2	27763082	27764082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011305)	TTS (NM_011305)	52999.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	235.11	231.77	201.64	209.16	184.74	159.95	197.51	190.13	128.03
Merged-chr2-124612505-3	chr2	124612045	124613045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	2249.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	209.94	205.97	110.99	256.39	182.4	186.48	220.74	273.26	124.91
Merged-chr2-130030054-2	chr2	130029544	130030544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009374, intron 7 of 12)	intron (NM_009374, intron 7 of 12)	-13636.0	NR_105757	102466628.0		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	8.58	9.22	5.55	0.67	0.93	0.0	9.51	2.65	0.62
Merged-chr1-128724700-3	chr1	128724195	128725195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-132396.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	126.42	121.19	39.77	132.24	108.23	90.02	80.27	115.41	58.08
Merged-chr13-58385059-3	chr13	58384585	58385585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027335, exon 1 of 4)	exon (NM_027335, exon 1 of 4)	140.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	96.11	91.7	70.3	76.24	89.57	111.73	96.11	82.24	53.08
Merged-chr1-24679182-3	chr1	24678692	24679692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	274.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	447.35	453.41	243.26	472.3	491.7	313.48	408.74	489.48	204.22
Merged-chr16-3884596-3	chr16	3884082	3885082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029090)	promoter-TSS (NM_029090)	-37.0	NM_029090	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	181.91	181.55	188.69	110.65	111.5	155.13	126.74	112.31	128.65
Merged-chr11-74524344-3	chr11	74523868	74524868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	65790.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	9.15	7.37	8.32	27.66	12.6	17.68	20.07	11.94	5.0
Merged-chr4-8854200-3	chr4	8853699	8854699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277149, exon 29 of 38)	exon (NM_001277149, exon 29 of 38)	102875.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	66.36	47.92	52.72	57.35	50.85	42.6	78.16	85.34	53.71
Merged-chr15-73068222-2	chr15	73067723	73068723	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7019.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	126.42	173.25	116.54	103.23	117.56	97.26	163.71	233.46	93.05
Merged-chr2-167538053-3	chr2	167537564	167538564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-131.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	14.87	5.53	7.4	10.12	4.67	1.61	10.56	3.98	5.0
Merged-chr13-109822635-3	chr13	109822139	109823139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81170.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	18.88	7.37	11.1	21.59	7.93	12.06	7.39	2.65	2.5
Merged-chr5-148495326-3	chr5	148494780	148495780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56393.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	132.14	86.17	57.35	135.62	97.5	89.22	96.11	94.18	58.08
Merged-chr18-70568209-3	chr18	70567698	70568698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311071)	promoter-TSS (NM_001311071)	-94.0	NM_001311071	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	37.18	24.88	57.35	41.83	24.26	28.94	61.26	29.18	27.48
Merged-chr9-101074536-3	chr9	101074035	101075035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-227.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	380.42	333.15	450.45	323.19	254.25	257.21	323.19	238.77	253.56
Merged-chr2-117299898-3	chr2	117299397	117300397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	42980.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	211.09	207.81	114.69	151.81	92.37	123.78	182.72	195.88	94.93
Merged-chr9-45086404-2	chr9	45085907	45086907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	7224.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	33.75	35.48	24.97	26.99	32.66	26.53	4.22	1.33	5.0
Merged-chr6-53045683-3	chr6	53045176	53046176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	22948.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.29	5.99	1.85	13.49	10.26	3.22	5.28	2.65	3.75
Merged-chr11-4096759-3	chr11	4096256	4097256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144520)	TTS (NM_144520)	-1325.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	66.36	79.72	70.3	66.8	70.44	74.75	66.54	72.52	49.96
Merged-chr1-84407125-3	chr1	84406648	84407648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 9 of 12)	intron (NM_152915, intron 9 of 12)	-122503.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	43.48	52.99	33.3	53.3	41.99	57.87	44.36	34.05	35.6
Merged-chr9-59544933-3	chr9	59544416	59545416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	5376.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	121.28	88.47	63.82	115.38	59.71	80.38	99.28	90.64	67.45
Merged-chr5-33782351-1	chr5	33781851	33782851	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019694, intron 1 of 13)	CpG	353.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	66.36	55.75	53.65	71.52	38.25	81.18	95.06	44.22	36.22
Merged-chr19-61227280-3	chr19	61226766	61227766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009970, intron 2 of 11)	CpG-7695	1152.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	374.7	315.18	221.06	348.83	297.17	256.41	297.84	359.04	168.0
Merged-chr1-132316047-3	chr1	132315519	132316519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028778)	promoter-TSS (NM_028778)	-106.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	159.6	188.92	183.14	168.68	166.54	158.35	132.02	144.59	128.03
Merged-chr12-34787554-3	chr12	34787034	34788034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	129561.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	34.9	31.33	38.85	40.48	24.72	36.17	24.29	18.13	6.87
Merged-chr5-100635233-3	chr5	100634737	100635737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	39019.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	43.48	33.18	26.82	35.09	24.72	24.92	33.8	30.07	14.99
Merged-chr1-106345435-3	chr1	106344925	106345925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 8 of 16)	intron (NM_133821, intron 8 of 16)	173556.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	30.32	20.27	9.25	36.43	20.06	11.25	30.63	14.59	18.74
Merged-chr6-98091771-3	chr6	98091271	98092271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99988.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	11.44	8.29	0.0	10.12	18.66	10.45	13.73	10.61	3.75
Merged-chr16-58670352-3	chr16	58669838	58670838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007757, exon 1 of 7)	5' UTR (NM_007757, exon 1 of 7)	130.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	29.17	30.87	27.75	43.18	42.45	45.01	28.52	28.3	13.74
Merged-chr11-103249715-3	chr11	103249219	103250219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	17682.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	146.45	119.34	129.49	114.03	85.84	107.71	105.62	109.22	54.33
Merged-chr2-76071048-3	chr2	76070550	76071550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-89083.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	34.32	20.74	22.2	16.19	16.33	17.68	27.46	17.24	13.74
Merged-chr2-118549772-3	chr2	118549283	118550283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138313)	promoter-TSS (NM_138313)	-97.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	124.14	87.55	54.57	89.74	77.44	74.75	126.74	130.44	66.82
Merged-chr12-35833491-3	chr12	35833006	35834006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92115.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	61.78	90.77	35.15	70.85	75.11	56.27	21.12	26.09	21.23
Merged-chr13-113623051-3	chr13	113622485	113623485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4421.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	15.45	13.82	0.0	26.99	26.12	11.25	19.01	21.22	6.87
Merged-chr10-14189303-3	chr10	14188799	14189799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	222920.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.01	13.36	5.55	28.34	8.4	16.08	34.85	18.13	19.98
Merged-chr19-12466284-3	chr19	12465771	12466771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010821)	TTS (NM_010821)	5492.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	161.89	98.15	103.59	174.08	76.51	114.94	115.12	75.17	36.85
Merged-chr2-31076541-3	chr2	31076056	31077056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	B3A|SINE|B2	19944.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	153.31	143.76	70.3	181.5	154.88	149.5	72.88	132.65	92.43
Merged-chr1-46854129-1	chr1	46853629	46854629	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172653)	promoter-TSS (NM_172653)	-511.0	NM_172653	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	290.03	258.04	176.67	242.22	190.8	174.42	217.57	215.34	145.51
Merged-chr9-107261060-3	chr9	107260552	107261552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 4 of 7)	intron (NM_001316691, intron 4 of 7)	28344.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	14.3	18.43	8.32	34.41	39.65	34.56	11.62	11.5	27.48
Merged-chr10-30751780-3	chr10	30751269	30752269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	L2|LINE|L2	51557.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	48.05	33.64	30.52	38.46	27.99	42.6	40.14	28.74	31.85
Merged-chr10-5194862-4	chr10	5194353	5195353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079686)	promoter-TSS (NM_001079686)	-146.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	53.77	66.81	35.15	70.85	83.04	61.09	64.43	88.43	46.22
Merged-chr18-56451830-3	chr18	56451325	56452325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	19693.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	30.89	23.5	37.92	31.71	17.73	25.72	14.79	18.13	14.99
Merged-chr11-101552005-3	chr11	101551525	101552525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252223)	promoter-TSS (NM_001252223)	-70.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	272.3	320.25	110.07	248.3	240.25	122.18	243.98	308.19	101.8
Merged-chr2-91206769-2	chr2	91206268	91207268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007387, exon 7 of 11)	exon (NM_007387, exon 7 of 11)	3856.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	195.07	173.25	162.79	155.19	102.17	123.78	151.03	124.69	116.79
Merged-chr2-177840354-3	chr2	177839841	177840841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024849)	promoter-TSS (NM_001024849)	-5.0	NM_001024849	329575.0	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	-	predicted gene 14325	protein-coding	18.88	16.13	12.95	39.81	28.92	23.31	41.19	35.82	37.47
Merged-chr11-6267839-3	chr11	6267350	6268350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026538)	promoter-TSS (NM_026538)	-121.0	NM_026538	52513.0	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	159.6	154.36	169.27	115.38	117.09	142.27	172.16	196.32	88.06
Merged-chr1-152021053-3	chr1	152020551	152021551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	69269.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	41.19	29.95	24.05	26.99	18.19	28.13	38.02	33.6	20.61
Merged-chr7-28437151-3	chr7	28436634	28437634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-313.0	NM_022024	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	274.59	222.1	171.12	221.31	158.61	153.52	178.5	202.07	135.52
Merged-chr4-62408721-3	chr4	62408211	62409211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	-72.0	NM_027297	70052.0	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	289.46	429.45	237.71	269.21	360.61	199.34	377.06	445.7	201.1
Merged-chr8-109682322-3	chr8	109681823	109682823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 3 of 10)	intron (NR_155034, intron 3 of 10)	10971.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	136.72	129.48	109.14	114.03	113.36	98.06	118.29	137.51	104.92
Merged-chr16-13668109-3	chr16	13667563	13668563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028761, exon 1 of 24)	5' UTR (NM_028761, exon 1 of 24)	107.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	82.95	83.86	42.55	53.98	71.38	90.83	97.17	76.49	49.96
Merged-chr13-24831573-3	chr13	24831059	24832059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	-70.0	NM_025790	66834.0	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	152.17	126.25	170.19	132.92	133.42	100.47	144.7	127.34	73.69
Merged-chr10-62216916-3	chr10	62216418	62217418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	14300.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	124.14	112.43	61.97	88.39	71.84	89.22	81.33	63.67	60.58
Merged-chr16-33932307-3	chr16	33931742	33932742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	34796.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	87.52	82.94	74.92	95.81	65.31	93.24	71.82	84.01	67.45
Merged-chr15-95789712-2	chr15	95789202	95790202	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	34.9	34.56	27.75	106.61	83.51	54.66	147.87	141.94	46.22
Merged-chr4-141869811-6	chr4	141869314	141870314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	5106.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	173.33	196.29	134.12	161.26	131.56	127.0	145.75	164.49	130.53
Merged-chr6-39207531-2	chr6	39206999	39207999	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-726.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	183.63	146.07	141.52	194.32	139.49	139.06	158.43	141.49	106.79
Merged-chr1-92641943-3	chr1	92641443	92642443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028108)	promoter-TSS (NR_028108)	5.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	116.7	129.94	114.69	169.35	148.82	144.68	184.83	160.51	76.82
Merged-chr7-5020398-3	chr7	5019882	5020882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290426)	promoter-TSS (NM_001290426)	6.0	NM_001033383	319748.0	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	229.97	153.44	176.67	180.15	132.49	217.02	195.39	160.95	154.26
Merged-chr19-32108093-3	chr19	32107589	32108589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4949.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	175.62	193.07	90.65	205.79	200.6	128.61	139.42	138.84	78.69
Merged-chr9-111977938-3	chr9	111977419	111978419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140792.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	41.19	48.38	28.67	55.33	45.25	47.42	43.3	36.26	21.23
Merged-chr1-157549876-3	chr1	157549391	157550391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159986, intron 12 of 25)	intron (NM_001159986, intron 12 of 25)	23721.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	16.59	22.12	20.35	24.96	16.33	16.88	7.39	8.84	11.24
Merged-chr8-83972817-3	chr8	83972318	83973318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008854)	promoter-TSS (NM_008854)	-160.0	NM_008854	18747.0	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	90.38	52.07	46.25	61.4	25.66	40.99	100.34	32.72	31.85
Merged-chr4-101264727-1	chr4	101264227	101265227	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	CpG	555.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	318.63	322.09	278.41	295.53	278.97	212.2	247.15	208.7	180.49
Merged-chr18-10533108-3	chr18	10532613	10533613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001083628, exon 19 of 33)	exon (NM_001083628, exon 19 of 33)	77239.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	70.36	68.2	60.12	89.06	65.31	45.01	88.72	106.56	48.71
Merged-chr9-25541570-3	chr9	25541075	25542075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	RLTR53_Mm|LTR|ERVK	59978.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	24.03	19.35	7.4	17.54	9.33	9.65	15.84	11.5	0.62
Merged-chr15-81101481-3	chr15	81100967	81101967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	3580.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	225.96	182.47	139.67	219.28	181.47	136.64	189.06	167.58	103.67
Merged-chr12-98901427-3	chr12	98900930	98901930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081191)	promoter-TSS (NM_001081191)	54.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	8.58	6.45	7.4	10.12	7.46	1.61	11.62	3.54	5.62
Merged-chr11-97766601-3	chr11	97766052	97767052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026186)	promoter-TSS (NM_026186)	61.0	NM_026186	67480.0	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	399.87	381.99	204.41	310.37	333.09	232.29	285.17	292.71	143.02
Merged-chr5-23410334-3	chr5	23409811	23410811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24042.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	26.31	26.73	9.25	10.12	11.2	28.13	13.73	11.5	18.74
Merged-chr1-191875884-3	chr1	191875386	191876386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30895.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	115.55	134.55	110.99	135.62	116.16	131.02	141.53	131.32	82.44
Merged-chr4-135439427-3	chr4	135438924	135439924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5619.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	57.21	74.19	40.7	66.8	47.58	52.25	61.26	99.05	43.09
Merged-chr3-37769509-3	chr3	37769000	37770000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45140.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	89.81	94.0	58.27	89.06	52.25	43.4	55.98	54.39	39.97
Merged-chr4-139214105-3	chr4	139213611	139214611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	20000.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	134.43	95.38	71.22	124.15	94.23	75.56	122.52	146.8	51.21
Merged-chr9-69989905-3	chr9	69989400	69990400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	CpG	434.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	285.45	275.55	336.68	257.07	230.92	255.6	239.75	218.87	203.6
Merged-chr16-75592841-3	chr16	75592360	75593360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198302)	promoter-TSS (NM_198302)	-31.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	4.0	0.92	1.85	5.4	0.93	8.04	3.17	2.65	2.5
Merged-chr16-57230986-3	chr16	57230470	57231470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 1 of 17)	intron (NM_026254, intron 1 of 17)	496.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	273.44	210.58	164.64	259.09	204.33	203.36	276.72	298.02	146.14
Merged-chr10-119065588-3	chr10	119065055	119066055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15056.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	78.94	73.73	35.15	91.76	78.84	51.44	117.24	178.64	57.46
Merged-chr13-55444568-1	chr13	55444068	55445068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001286063)	promoter-TSS (NM_001286063)	-504.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	111.55	97.23	94.35	82.32	60.65	109.32	113.01	104.35	93.68
Merged-chr14-75057049-3	chr14	75056550	75057550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	41023.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	129.86	120.73	142.44	97.16	82.11	87.61	107.73	103.91	90.56
Merged-chr13-92611023-3	chr13	92610515	92611515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172588)	promoter-TSS (NM_172588)	-123.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	123.56	88.47	79.55	108.63	87.7	114.14	143.64	121.6	67.45
Merged-chr11-5505998-3	chr11	5505510	5506510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14631.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	135.58	139.16	93.42	126.17	89.1	105.3	142.59	155.64	81.81
Merged-chr6-129400524-1	chr6	129400024	129401024	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019985, intron 2 of 5)	intron (NM_019985, intron 2 of 5)	3227.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	212.23	220.25	104.52	217.93	204.33	170.4	229.19	271.49	125.53
Merged-chr14-57571569-3	chr14	57571068	57572068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026526)	promoter-TSS (NM_026526)	1.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	100.68	154.36	92.5	116.05	127.36	122.98	161.6	174.21	106.79
Merged-chr6-37464121-1	chr6	37463621	37464621	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-21973.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	9.15	5.53	4.62	0.0	3.27	1.61	16.9	14.15	11.24
Merged-chr17-24937008-3	chr17	24936460	24937460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163447)	promoter-TSS (NM_001163447)	17.0	NM_001163448	30957.0	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	131.57	119.34	96.2	123.47	131.09	98.06	148.92	172.0	108.67
Merged-chr1-45795127-1	chr1	45794627	45795627	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028599)	promoter-TSS (NM_028599)	-39.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	140.73	140.08	115.62	130.22	96.57	105.3	133.08	149.01	77.44
Merged-chr5-34761681-3	chr5	34761202	34762202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010414)	promoter-TSS (NM_010414)	-38.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	201.93	175.56	154.47	164.63	126.42	116.55	149.98	98.6	113.04
Merged-chr11-98710663-3	chr11	98710168	98711168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361995, intron 16 of 25)	intron (NM_001361995, intron 16 of 25)	9355.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	28.6	21.66	18.5	37.78	24.26	27.33	14.79	19.01	16.24
Merged-chr9-31009475-3	chr9	31008987	31009987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-21157.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	43.48	48.38	18.5	37.11	16.79	31.35	59.15	41.56	41.22
Merged-chr4-101292184-3	chr4	101291699	101292699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26917.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	151.02	231.31	160.94	144.39	230.92	212.2	214.41	234.79	145.51
Merged-chr10-99461805-3	chr10	99461308	99462308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147363.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	143.59	133.63	74.92	131.57	93.3	136.64	99.28	153.43	91.81
Merged-chr11-46846129-2	chr11	46845630	46846630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35331.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	27.46	33.18	31.45	35.09	24.72	49.03	25.35	16.36	16.86
Merged-chr9-62955101-3	chr9	62954595	62955595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	25784.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	98.97	90.77	70.3	105.93	62.51	81.18	94.0	95.51	33.72
Merged-chr11-100414534-3	chr11	100414040	100415040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	279.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	35.47	13.82	1.85	26.99	9.8	12.06	21.12	5.75	9.99
Merged-chr6-4086937-3	chr6	4086435	4087435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009748)	promoter-TSS (NM_009748)	-5.0	NM_009748	12068.0	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	107.55	146.07	69.37	91.76	108.23	77.97	139.42	153.43	83.06
Merged-chr2-12208316-1	chr2	12207816	12208816	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-92930.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.29	2.76	1.85	2.7	3.73	4.82	9.51	3.98	0.62
Merged-chr3-27317061-3	chr3	27316593	27317593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009425)	promoter-TSS (NM_009425)	16.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	93.82	114.27	64.75	151.81	116.16	107.71	144.7	164.49	71.2
Merged-chr6-122856146-3	chr6	122855646	122856646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009779)	promoter-TSS (NM_009779)	11.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	173.9	171.41	128.57	183.52	157.21	104.49	168.99	240.1	92.43
Merged-chr5-64337270-2	chr5	64336769	64337769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 16 of 18)	intron (NM_001289514, intron 16 of 18)	106912.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	85.81	69.58	61.97	133.59	119.89	106.9	64.43	130.88	44.34
Merged-chr10-128747814-3	chr10	128747323	128748323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	-56.0	NM_030100	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	177.91	261.73	160.94	235.48	250.05	221.85	228.14	293.16	186.11
Merged-chr5-148399904-3	chr5	148399418	148400418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-14.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	89.81	70.04	32.37	60.72	45.25	12.86	64.43	66.33	21.86
Merged-chr2-144215466-3	chr2	144214965	144215965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26175.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	53.2	42.85	39.77	76.24	39.65	32.15	64.43	53.06	34.35
Merged-chr10-8747955-3	chr10	8747481	8748481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 10 of 19)	intron (NM_175155, intron 10 of 19)	138089.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	69.22	65.43	21.27	105.93	71.84	103.69	80.27	54.39	36.85
Merged-chr8-120715422-3	chr8	120714924	120715924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20934.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	145.3	122.57	62.9	127.52	111.5	110.12	137.3	163.16	114.29
Merged-chr12-85598757-1	chr12	85598257	85599257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030887)	promoter-TSS (NM_030887)	-348.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	476.52	395.35	289.51	427.1	335.42	328.75	396.07	414.75	236.07
Merged-chr14-47276205-3	chr14	47275710	47276710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080843)	promoter-TSS (NM_080843)	647.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	50.34	39.17	38.85	54.65	48.98	54.66	52.81	85.78	37.47
Merged-chr4-136185567-3	chr4	136185071	136186071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177733, intron 5 of 6)	intron (NM_177733, intron 5 of 6)	4789.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	13.73	9.68	12.95	18.89	14.0	14.47	9.51	11.5	6.25
Merged-chr6-113697029-3	chr6	113696533	113697533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033463)	promoter-TSS (NM_001033463)	-17.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	210.52	117.5	110.07	220.63	115.69	115.75	171.1	88.88	109.29
Merged-chr11-5790120-3	chr11	5789627	5790627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 1 of 12)	L2b|LINE|L2	1644.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	69.79	55.75	46.25	50.6	42.45	69.13	70.76	72.07	48.09
Merged-chr7-101385533-3	chr7	101385031	101386031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	5.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	114.41	70.04	68.45	120.1	76.51	92.44	108.79	109.66	49.34
Merged-chr3-95315190-3	chr3	95314692	95315692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029789)	promoter-TSS (NM_029789)	2.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	179.62	151.6	197.02	174.75	178.21	202.55	171.1	134.42	115.54
Merged-chr8-111243783-3	chr8	111243274	111244274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	15428.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	52.06	28.11	28.67	38.46	34.99	34.56	68.65	57.04	36.85
Merged-chr1-91955074-3	chr1	91954563	91955563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 22 of 26)	intron (NM_207225, intron 22 of 26)	153602.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	15.45	20.27	24.05	15.52	11.2	29.74	7.39	10.61	7.49
Merged-chr2-157513802-3	chr2	157513296	157514296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46282.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	48.05	36.86	24.97	43.18	41.05	45.82	47.53	36.26	17.49
Merged-chr19-46648778-3	chr19	46648286	46649286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	24214.0	NM_007809	13074.0	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	94.39	87.55	57.35	109.98	75.57	101.28	82.38	68.54	36.85
Merged-chrX-164419642-3	chrX	164419146	164420146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011081)	promoter-TSS (NM_011081)	-134.0	NR_152315	18700.0	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	68.65	74.65	48.1	76.92	74.64	45.82	65.48	87.55	33.1
Merged-chr12-85497503-3	chr12	85497005	85498005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23615.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	262.0	158.97	152.62	275.28	167.94	167.19	236.59	232.58	65.58
Merged-chr4-135416601-3	chr4	135416088	135417088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030481)	promoter-TSS (NR_030481)	45.0	NR_030481	735285.0		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	84.09	99.99	91.57	97.16	95.17	108.51	88.72	103.47	60.58
Merged-chr12-35462811-3	chr12	35462331	35463331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72158.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	19.45	28.57	9.25	29.69	28.92	27.33	7.39	6.19	7.49
Merged-chr5-151368611-3	chr5	151368123	151369123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	-52.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	96.11	121.19	138.74	106.61	113.36	139.86	167.93	151.66	114.91
Merged-chr4-138913990-3	chr4	138913477	138914477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028453)	promoter-TSS (NM_028453)	-30.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	28.6	13.82	23.12	17.54	10.26	19.29	17.96	7.52	6.25
Merged-chr4-63840638-3	chr4	63840155	63841155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009403, intron 2 of 3)	intron (NM_009403, intron 2 of 3)	20629.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	13.73	6.91	0.0	7.42	6.06	2.41	6.34	2.65	3.75
Merged-chr14-66257827-3	chr14	66257347	66258347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	23205.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	65.79	52.07	61.05	52.63	53.65	40.19	42.25	34.49	29.98
Merged-chr14-77546733-3	chr14	77546233	77547233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-39865.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	40.04	46.08	15.72	43.18	30.79	44.21	29.57	33.6	29.35
Merged-chr6-43666213-3	chr6	43665702	43666702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311111)	promoter-TSS (NM_001311111)	76.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	93.82	101.37	69.37	104.58	92.84	90.02	85.55	97.72	54.33
Merged-chr12-30584459-3	chr12	30583961	30584961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172049)	promoter-TSS (NM_172049)	18.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	41.76	53.45	31.45	38.46	47.58	67.52	48.58	45.54	36.85
Merged-chr16-49987169-3	chr16	49986658	49987658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	6698.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	8.01	3.69	9.25	10.12	4.2	0.0	6.34	3.1	8.74
Merged-chr5-146845066-3	chr5	146844575	146845575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	4.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	22.88	11.06	3.7	17.54	20.99	16.88	28.52	30.95	18.74
Merged-chr2-38926737-3	chr2	38926226	38927226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-265.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	76.08	62.67	42.55	87.04	45.72	55.46	67.6	58.37	31.85
Merged-chr15-95793066-3	chr15	95792585	95793585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	2242.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	213.95	214.26	132.27	209.16	173.54	116.55	243.98	203.4	101.8
Merged-chr3-89911383-3	chr3	89910835	89911835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	1861.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	141.3	99.07	60.12	107.28	71.84	107.71	67.6	78.26	99.3
Merged-chr2-118513123-3	chr2	118512633	118513633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31454.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	24.03	18.89	20.35	33.06	7.46	1.61	52.81	32.28	28.73
Merged-chr19-3852479-3	chr19	3851931	3852931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271496, intron 1 of 11)	CpG	658.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	279.16	267.25	234.01	296.88	248.65	147.09	207.01	245.4	158.63
Merged-chr12-17450717-1	chr12	17450217	17451217	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-94156.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.0	5.07	5.55	4.72	0.47	5.63	2.11	2.65	3.75
Merged-chr12-40381383-3	chr12	40380888	40381888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	64402.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	77.23	77.87	44.4	49.93	43.39	16.88	69.71	56.6	36.85
Merged-chr16-91847715-3	chr16	91847218	91848218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	83912.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	202.51	186.62	161.87	269.89	207.6	164.78	276.72	336.49	149.26
Merged-chr14-51883742-3	chr14	51883253	51884253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1089.0	NM_001029990	52535.0	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	47.48	55.75	43.47	51.95	44.78	29.74	66.54	68.98	31.23
Merged-chr11-121083108-3	chr11	121082602	121083602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1963.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	74.37	68.66	61.97	65.45	62.05	77.97	52.81	75.61	61.83
Merged-chr6-83456647-3	chr6	83456158	83457158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347313)	promoter-TSS (NM_001347313)	-266.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	211.09	116.12	198.87	226.71	125.49	172.01	193.28	101.26	114.29
Merged-chr16-33624926-3	chr16	33624420	33625420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134251, exon 9 of 13)	exon (NM_134251, exon 9 of 13)	-59546.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	74.94	56.68	49.95	68.15	34.06	42.6	69.71	65.44	41.84
Merged-chr6-115675914-3	chr6	115675380	115676380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152134)	promoter-TSS (NR_152134)	8.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	185.35	214.26	190.54	218.61	195.0	221.04	194.34	195.88	159.25
Merged-chr8-39644738-3	chr8	39644236	39645236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2058.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	77.23	87.09	61.05	99.18	84.9	73.14	64.43	74.73	54.96
Merged-chr4-83266575-3	chr4	83266088	83267088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	57601.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	123.56	153.44	93.42	91.09	78.84	90.83	44.36	42.01	34.35
Merged-chr11-72607191-3	chr11	72606670	72607670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025985)	promoter-TSS (NM_025985)	-91.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	234.54	218.41	163.72	165.31	180.54	194.52	183.78	156.97	148.64
Merged-chr7-19676010-3	chr7	19675508	19676508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001309799, intron 1 of 3)	intron (NM_001309799, intron 1 of 3)	1933.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	125.85	136.39	104.52	157.21	152.55	182.46	174.27	186.59	96.8
Merged-chr5-32746437-3	chr5	32745942	32746942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347332)	promoter-TSS (NM_001347332)	-100.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	207.08	273.25	189.62	220.63	228.59	197.73	224.97	224.62	166.75
Merged-chr13-3538619-3	chr13	3538112	3539112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	537.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	192.78	196.75	153.54	167.33	146.95	182.46	197.51	146.8	175.49
Merged-chr1-59186532-1	chr1	59186032	59187032	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159948, intron 15 of 33)	intron (NM_001159948, intron 15 of 33)	-23143.0	NM_001164682	227157.0	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	4.58	2.76	6.47	19.57	16.33	6.43	2.11	0.0	3.12
Merged-chr2-167944939-1	chr2	167944439	167945439	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12612.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	40.04	39.17	34.22	56.68	33.59	42.6	49.64	36.26	29.98
Merged-chr19-6942503-3	chr19	6942005	6943005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285453)	promoter-TSS (NM_001285453)	-55.0	NM_001177361	107173.0	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	83.52	90.31	87.87	101.88	100.3	106.9	72.88	78.26	64.33
Merged-chr8-61928128-3	chr8	61927651	61928651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293783)	promoter-TSS (NM_001293783)	64.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	300.33	428.07	139.67	305.65	390.93	195.32	320.02	472.68	177.37
Merged-chrX-21568184-3	chrX	21567683	21568683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	83559.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	92.1	102.75	49.95	92.44	83.04	82.79	81.33	98.16	34.97
Merged-chr13-43785199-3	chr13	43784721	43785721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289915, exon 1 of 5)	exon (NM_001289915, exon 1 of 5)	109.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	256.85	184.31	186.84	312.39	271.04	260.43	211.24	226.39	117.41
Merged-chr12-34142964-3	chr12	34142462	34143462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	185291.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	16.02	19.35	5.55	12.14	9.8	19.29	15.84	21.67	19.98
Merged-chr1-105981469-3	chr1	105980970	105981970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	8812.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	295.18	265.87	183.14	323.19	261.24	173.62	256.65	370.09	151.76
Merged-chr17-12318800-3	chr17	12318311	12319311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045290)	promoter-TSS (NR_045290)	-15.0	NM_001357722	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	90.38	119.34	78.62	151.14	128.29	87.61	163.71	125.13	90.56
Merged-chr17-11644810-1	chr17	11644310	11645310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	238379.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	54.92	70.04	32.37	0.67	6.06	4.82	1.06	0.88	5.0
Merged-chr7-45704909-3	chr7	45704418	45705418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-329.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	175.05	176.02	140.59	151.81	127.36	164.78	156.32	279.89	124.28
Merged-chr17-56036716-3	chr17	56036229	56037229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-70.0	NM_001357649	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	141.87	112.43	97.12	122.12	79.31	96.45	103.51	95.51	64.33
Merged-chr17-70987574-3	chr17	70987073	70988073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	PB1D10|SINE|Alu	2943.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	54.92	57.6	33.3	65.45	44.32	63.5	62.31	62.35	42.47
Merged-chr11-50378483-3	chr11	50377994	50378994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347487, intron 2 of 12)	CpG-1904	775.0	NM_001347487	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	235.11	245.6	218.29	224.68	193.13	180.85	197.51	189.69	168.0
Merged-chr9-121317083-3	chr9	121316564	121317564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	19562.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	238.55	217.95	159.09	180.82	215.99	186.48	199.62	223.29	108.67
Merged-chr6-39206614-2	chr6	39206118	39207118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033430, exon 1 of 20)	exon (NM_001033430, exon 1 of 20)	155.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	339.8	283.84	308.93	320.49	278.97	243.55	250.32	215.78	177.37
Merged-chr3-96576858-3	chr3	96576318	96577318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10017.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	349.52	323.01	133.19	329.26	251.45	261.23	292.56	439.07	191.73
Merged-chr10-84402022-3	chr10	84401534	84402534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38437.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	109.26	82.02	71.22	72.19	49.92	65.91	70.76	41.12	50.59
Merged-chr19-34526402-3	chr19	34525934	34526934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	1040.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	232.25	266.33	127.64	234.8	203.4	158.35	270.38	314.82	157.38
Merged-chr5-102063299-3	chr5	102062788	102063788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	6633.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	85.24	94.46	96.2	106.61	71.38	92.44	122.52	124.25	62.45
Merged-chr12-103532272-3	chr12	103531798	103532798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028980)	promoter-TSS (NM_028980)	-267.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	3.43	2.76	11.1	7.42	3.73	3.22	1.06	0.44	4.37
Merged-chr8-46000021-3	chr8	45999530	46000530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039562)	promoter-TSS (NM_001039562)	-180.0	NM_001039562	654824.0	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	43.48	42.85	50.87	45.21	36.39	52.25	40.14	38.91	34.35
Merged-chr2-77281212-3	chr2	77280739	77281739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175465)	promoter-TSS (NM_175465)	-647.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	125.28	102.29	78.62	145.74	109.63	103.69	116.18	91.09	65.58
Merged-chr10-12856118-1	chr10	12855618	12856618	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	MLTR11A|LTR|ERVK	5617.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.0	3.69	6.47	6.07	3.27	3.22	1.06	2.21	6.25
Merged-chr19-5038858-3	chr19	5038370	5039370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	44.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	66.36	68.66	37.0	73.54	79.77	30.54	48.58	80.92	31.23
Merged-chr18-67478719-3	chr18	67478206	67479206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144867, intron 6 of 6)	intron (NM_144867, intron 6 of 6)	13857.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.15	2.76	6.47	8.77	7.0	4.82	8.45	7.07	1.25
Merged-chr1-138940602-2	chr1	138940102	138941102	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-23107.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	2.29	5.53	1.85	33.06	20.99	12.86	36.97	28.74	12.49
Merged-chr13-42372417-3	chr13	42371917	42372917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	70941.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	9.15	5.99	7.4	10.12	4.67	8.84	14.79	8.84	6.25
Merged-chr1-34858868-3	chr1	34858345	34859345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	8856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	80.66	70.04	69.37	100.53	122.23	106.9	113.01	105.68	73.69
Merged-chr19-3912880-3	chr19	3912385	3913385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144870)	promoter-TSS (NM_144870)	-111.0	NM_001271444	225887.0	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	212.8	154.82	118.39	207.14	124.09	153.52	208.07	241.42	80.56
Merged-chr13-13666308-3	chr13	13665823	13666823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75914.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	16.02	9.22	12.95	8.77	9.8	12.86	10.56	5.31	12.49
Merged-chr2-128967261-3	chr2	128966750	128967750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-152.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	350.1	342.82	263.61	403.48	410.99	276.5	346.43	361.25	214.84
Merged-chr11-104382084-3	chr11	104381594	104382594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 3 of 14)	B1_Mur2|SINE|Alu	60197.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	32.61	52.53	31.45	49.93	34.06	20.09	33.8	26.97	18.74
Merged-chr15-25858717-3	chr15	25858225	25859225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	15427.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	16.02	6.45	5.55	27.66	7.93	14.47	19.01	16.8	6.87
Merged-chr6-17598706-3	chr6	17598206	17599206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38304.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	22.31	16.59	12.02	16.19	15.86	13.66	25.35	23.43	26.85
Merged-chr13-67128633-3	chr13	67128148	67129148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172392, intron 1 of 3)	intron (NM_172392, intron 1 of 3)	420.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	76.66	122.11	105.44	82.32	93.3	95.65	135.19	146.8	78.69
Merged-chr18-36286990-3	chr18	36286486	36287486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5824.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	271.15	183.85	206.26	218.61	153.95	148.7	208.07	145.03	145.51
Merged-chr18-60843943-3	chr18	60843443	60844443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011552, intron 2 of 24)	intron (NM_011552, intron 2 of 24)	5021.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	108.69	45.62	75.85	82.32	41.05	59.48	92.94	68.54	52.46
Merged-chr8-84067325-3	chr8	84066823	84067823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	CpG	487.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	407.87	230.85	184.99	314.42	166.08	99.67	218.63	148.13	102.42
Merged-chr2-127143466-3	chr2	127142985	127143985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163527)	promoter-TSS (NM_001163527)	-28.0	NM_001355634	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	19.45	12.9	34.22	20.92	28.46	35.37	24.29	27.41	21.86
Merged-chr1-170997905-3	chr1	170997396	170998396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21030.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	204.8	209.66	174.82	176.1	155.35	156.74	208.07	275.03	135.52
Merged-chr11-5955745-3	chr11	5955263	5956263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019661)	promoter-TSS (NM_019661)	5.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	141.3	186.62	126.72	143.71	157.68	149.5	190.11	138.4	89.93
Merged-chr10-67579985-3	chr10	67579454	67580454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7995.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	38.9	47.0	26.82	54.65	20.06	40.99	35.91	30.51	23.73
Merged-chr2-134644187-3	chr2	134643679	134644679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029148)	promoter-TSS (NM_029148)	-58.0	NM_029148	52837.0	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	46.34	39.63	11.1	70.17	49.92	26.53	54.92	44.66	19.36
Merged-chr18-42275284-3	chr18	42274790	42275790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033452)	promoter-TSS (NR_033452)	-63.0	NM_172626	225432.0	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	92.67	118.42	95.27	89.74	69.98	90.83	134.14	102.14	61.83
Merged-chr4-133874717-3	chr4	133874219	133875219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	12.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	140.15	113.81	108.22	120.77	101.7	127.8	71.82	59.25	47.46
Merged-chr11-70452249-3	chr11	70451756	70452756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025397, exon 2 of 3)	exon (NM_025397, exon 2 of 3)	325.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	350.1	238.69	152.62	282.03	229.52	266.05	241.87	267.95	146.14
Merged-chr9-108079318-3	chr9	108078820	108079820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032543)	promoter-TSS (NM_032543)	-19.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	34.9	39.63	34.22	51.95	33.59	46.62	44.36	30.95	18.74
Merged-chr17-27025509-3	chr17	27025019	27026019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001251881, intron 2 of 6)	intron (NM_001251881, intron 2 of 6)	3108.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	89.24	79.25	32.37	70.85	74.64	73.14	80.27	72.96	38.1
Merged-chr18-61211624-3	chr18	61211116	61212116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007885)	promoter-TSS (NM_007885)	-20.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	139.58	170.95	144.29	182.85	161.41	163.17	193.28	239.21	109.92
Merged-chr4-126438059-3	chr4	126437583	126438583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8541.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	203.65	188.92	109.14	151.14	108.7	104.49	173.21	179.52	99.92
Merged-chr12-70937817-3	chr12	70937293	70938293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019785)	promoter-TSS (NM_019785)	-64.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	134.43	117.96	110.07	138.99	115.69	98.06	181.66	145.47	74.32
Merged-chr3-104794690-3	chr3	104794189	104795189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291859)	TTS (NM_001291859)	5655.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	50.34	33.64	42.55	43.18	46.18	57.87	59.15	45.99	31.23
Merged-chr7-49246080-3	chr7	49245598	49246598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175272)	promoter-TSS (NM_175272)	-91.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	16.02	12.44	7.4	30.36	20.53	12.86	28.52	10.17	9.99
Merged-chr12-79352329-2	chr12	79351846	79352846	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	54995.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	17.73	10.14	3.7	22.94	12.6	8.84	73.93	41.56	16.86
Merged-chr2-72979116-4	chr2	72978571	72979571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	210.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	286.6	217.03	287.66	296.88	205.26	192.91	257.71	151.22	138.02
Merged-chr7-88250593-3	chr7	88250089	88251089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-27496.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	138.44	95.84	86.95	140.34	57.38	101.28	123.57	147.68	83.69
Merged-chr5-31240848-3	chr5	31240354	31241354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347326)	promoter-TSS (NM_001347326)	-29.0	NM_001347326	192292.0	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	216.81	202.75	229.39	186.22	175.87	180.05	166.88	141.49	145.51
Merged-chr9-57765966-3	chr9	57765466	57766466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007713)	promoter-TSS (NM_007713)	-106.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	331.22	363.56	258.06	292.15	315.36	238.73	268.27	286.52	192.35
Merged-chr7-109752681-2	chr7	109752187	109753187	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020050)	promoter-TSS (NM_020050)	-424.0	NM_020050	56786.0	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	181.34	176.94	139.67	161.26	192.67	143.88	197.51	187.48	111.17
Merged-chr7-80775013-3	chr7	80774513	80775513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	28318.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	334.65	335.45	160.02	325.89	375.54	207.38	285.17	399.28	148.01
Merged-chr4-121028881-3	chr4	121028382	121029382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10684.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	24.03	21.66	11.1	24.29	11.2	10.45	17.96	8.4	11.24
Merged-chr12-112994356-1	chr12	112993856	112994856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028193, intron 1 of 17)	intron (NM_028193, intron 1 of 17)	6265.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	26.89	23.96	15.72	1.35	5.13	3.22	0.0	1.77	4.37
Merged-chr8-128680795-3	chr8	128680324	128681324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4830.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	93.82	86.17	65.67	100.53	62.98	85.2	89.78	111.87	70.57
Merged-chr19-42129093-3	chr19	42128555	42129555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027106)	promoter-TSS (NM_027106)	-62.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	140.73	102.29	80.47	109.3	97.97	130.21	68.65	65.88	49.96
Merged-chr5-124579095-3	chr5	124578619	124579619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181410)	promoter-TSS (NM_181410)	12.0	NM_145371	209354.0	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	96.68	76.95	48.1	76.24	71.84	95.65	97.17	109.22	43.72
Merged-chr3-95659518-3	chr3	95658980	95659980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008562, exon 1 of 3)	exon (NM_008562, exon 1 of 3)	759.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	379.27	274.63	213.66	387.96	259.85	231.49	355.93	288.74	194.23
Merged-chr3-38143298-3	chr3	38142785	38143785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64834.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	141.3	115.66	74.0	127.52	117.56	68.32	170.05	192.34	50.59
Merged-chrX-48314846-3	chrX	48314343	48315343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26515.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	8.58	12.44	19.42	16.19	11.2	24.11	20.07	15.03	13.74
Merged-chr1-172376443-3	chr1	172375926	172376926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-105.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	141.87	129.48	130.42	128.2	111.96	114.14	126.74	130.88	81.81
Merged-chr18-12178426-1	chr18	12177926	12178926	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029623, intron 5 of 19)	intron (NM_029623, intron 5 of 19)	9696.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	3.43	1.38	0.0	2.7	5.6	1.61	12.67	3.98	9.99
Merged-chr4-3649210-3	chr4	3648709	3649709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7297.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	254.56	204.59	126.72	211.19	145.08	128.61	160.54	235.23	119.28
Merged-chr1-161497500-3	chr1	161497005	161498005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	MIR|SINE|MIR	2848.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	46.34	48.38	35.15	31.71	28.46	16.08	33.8	34.93	18.74
Merged-chr6-5110589-3	chr6	5110089	5111089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	83357.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	26.31	25.34	7.4	14.84	17.26	13.66	23.24	17.24	12.49
Merged-chr5-65956079-3	chr5	65955660	65956660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10964.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	143.59	78.79	72.15	169.35	107.3	47.42	142.59	109.22	54.96
Merged-chr18-12972192-3	chr18	12971668	12972668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008378, exon 1 of 11)	5' UTR (NM_008378, exon 1 of 11)	245.0	NM_008378	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	150.45	179.71	87.87	132.24	172.14	122.98	127.8	190.57	63.7
Merged-chrX-13041909-3	chrX	13041394	13042394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038158)	promoter-TSS (NR_038158)	-121.0	NR_038158	70489.0	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	152.74	138.7	80.47	136.97	134.35	91.63	139.42	129.11	56.21
Merged-chr15-74709403-3	chr15	74708912	74709912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008415)	promoter-TSS (NM_008415)	-90.0	NM_008415	16469.0	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	37.18	51.15	21.27	43.18	39.19	36.97	41.19	26.97	20.61
Merged-chr1-125466789-3	chr1	125466238	125467238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31011.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	63.5	66.35	61.97	85.01	52.72	70.73	104.56	91.09	83.69
Merged-chr6-50110134-3	chr6	50109627	50110627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-114.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	48.05	29.49	25.9	59.38	28.92	32.15	47.53	18.13	7.49
Merged-chr12-76553195-3	chr12	76552679	76553679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-5254.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	114.98	77.41	51.8	97.16	77.44	59.48	76.05	65.44	44.34
Merged-chr13-67844306-3	chr13	67843817	67844817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11587.0	NM_001309373	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	9.72	5.07	8.32	14.17	14.0	9.65	22.18	17.24	18.11
Merged-chr8-104248528-3	chr8	104248026	104249026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021028)	promoter-TSS (NM_021028)	32.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	242.55	325.77	186.84	246.27	272.44	224.26	302.07	309.52	154.88
Merged-chr8-39006283-3	chr8	39005790	39006790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357305, intron 1 of 8)	CpG	445.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	42.33	39.17	51.8	45.88	46.18	55.46	42.25	42.01	22.48
Merged-chr11-51916244-3	chr11	51915754	51916754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51377.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	362.11	451.11	343.16	410.9	368.54	331.96	410.86	448.8	241.69
Merged-chr3-87357856-3	chr3	87357355	87358355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009690)	promoter-TSS (NM_009690)	-26.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	115.55	147.91	69.37	122.12	126.89	113.33	248.2	284.31	102.42
Merged-chr8-33652449-3	chr8	33651909	33652909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-829.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	42.33	81.56	60.12	65.45	67.64	72.34	229.19	275.03	140.52
Merged-chr2-158145599-3	chr2	158145099	158146099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	793.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	356.96	391.21	298.76	427.1	419.39	340.0	434.09	552.71	180.49
Merged-chr1-152810858-3	chr1	152810391	152811391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	10738.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	85.24	67.74	59.2	49.93	62.98	63.5	51.75	60.13	33.72
Merged-chr4-141952342-3	chr4	141951854	141952854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 12 of 31)	intron (NM_177868, intron 12 of 31)	-30638.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	280.88	189.84	149.84	284.73	151.62	181.66	242.92	200.74	147.39
Merged-chr11-3930231-3	chr11	3929739	3930739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130458, intron 2 of 9)	intron (NM_001130458, intron 2 of 9)	1722.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	24.03	30.41	11.1	47.9	34.99	40.99	31.69	32.72	25.61
Merged-chrX-93877871-3	chrX	93877367	93878367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-45772.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	6.86	13.36	7.4	7.42	12.6	16.08	9.51	8.4	11.87
Merged-chr3-96905287-3	chr3	96904710	96905710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026229)	promoter-TSS (NM_026229)	88.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	30.89	35.48	37.0	39.81	35.92	22.51	54.92	36.26	21.23
Merged-chr10-121459267-3	chr10	121458784	121459784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	16966.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	179.05	187.08	112.84	170.7	135.75	107.71	157.37	165.81	107.42
Merged-chr7-89337472-3	chr7	89336977	89337977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	MER5A1|DNA|hAT-Charlie	1310.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	169.9	156.67	68.45	131.57	128.76	83.59	210.18	199.42	84.31
Merged-chr9-118649646-3	chr9	118649143	118650143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	B4|SINE|B4	42934.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	106.97	67.27	101.74	127.52	68.11	110.92	108.79	76.94	47.46
Merged-chr3-61294990-3	chr3	61294469	61295469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69538.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	22.88	25.8	29.6	29.01	11.66	16.08	23.24	19.01	23.11
Merged-chr3-8667184-3	chr3	8666676	8667676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-138.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	191.64	124.41	132.27	194.99	139.49	117.35	141.53	88.88	83.69
Merged-chr15-84167758-3	chr15	84167259	84168259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105816)	promoter-TSS (NR_105816)	-57.0	NM_054088	116939.0	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	19.45	17.51	5.55	10.12	13.06	15.27	11.62	10.17	22.48
Merged-chr18-82783102-3	chr18	82782590	82783590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24051.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	12.59	10.14	12.95	18.22	9.8	3.22	15.84	18.57	3.75
Merged-chr10-34198295-3	chr10	34197829	34198829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	9222.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	88.1	123.49	83.25	99.86	59.71	93.24	87.66	96.39	71.2
Merged-chr10-82962839-3	chr10	82962320	82963320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie6|DNA|hAT-Charlie	-22677.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	22.31	7.83	1.85	18.22	10.26	6.43	6.34	3.54	2.5
Merged-chr3-139042685-3	chr3	139042185	139043185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	32516.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	85.24	101.83	70.3	82.99	41.52	86.01	67.6	80.92	74.32
Merged-chr3-9028118-3	chr3	9027628	9028628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23405.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	88.1	53.45	65.67	128.87	62.98	81.18	102.45	91.53	48.71
Merged-chr2-129058168-1	chr2	129057668	129058668	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7779.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	4.0	0.46	1.85	10.8	3.27	5.63	0.0	1.33	3.75
Merged-chr11-32560214-3	chr11	32559724	32560724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	26958.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	140.73	125.79	77.7	156.53	125.96	128.61	144.7	177.31	76.19
Merged-chr4-58503227-3	chr4	58502719	58503719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-3816.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	9.72	15.67	20.35	6.07	6.06	12.86	30.63	31.84	16.86
Merged-chr5-142926537-3	chr5	142926044	142927044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19790.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	45.19	62.21	83.25	43.18	44.78	58.68	74.99	86.22	83.69
Merged-chr19-46501581-3	chr19	46501070	46502070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053100)	promoter-TSS (NM_053100)	-78.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	170.47	110.13	179.44	132.92	80.71	112.53	197.51	133.98	117.41
Merged-chr1-156660853-1	chr1	156660353	156661353	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 4 of 5)	ERVB7_1-LTR_MM|LTR|ERVK	13486.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	2.29	3.23	6.47	1.35	0.0	12.06	22.18	16.36	22.48
Merged-chr15-100461160-3	chr15	100460630	100461630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7881.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	192.21	169.11	81.4	128.87	106.36	41.8	145.75	164.49	64.33
Merged-chr4-134731596-3	chr4	134731100	134732100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27310.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	43.48	26.26	49.02	45.88	36.85	35.37	35.91	42.45	29.98
Merged-chr17-45585511-3	chr17	45585020	45586020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001199116, exon 13 of 13)	3' UTR (NM_001199116, exon 13 of 13)	6873.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	106.97	77.87	81.4	71.52	47.58	100.47	89.78	88.43	98.68
Merged-chr6-87536291-3	chr6	87535785	87536785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3026.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	273.44	205.97	157.24	224.68	132.95	181.66	178.5	170.23	127.4
Merged-chr6-116724659-3	chr6	116724158	116725158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	30.89	38.25	37.0	45.88	34.52	47.42	41.19	41.12	31.23
Merged-chr13-23752284-3	chr13	23751784	23752784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178203)	promoter-TSS (NM_178203)	-96.0	NM_178203	319150.0		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	55.49	71.88	24.97	64.77	62.98	49.83	90.83	92.41	36.22
Merged-chr8-84204192-3	chr8	84203704	84204704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4314.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	350.67	237.76	238.64	298.23	224.39	211.4	249.26	265.74	145.51
Merged-chr14-55386958-2	chr14	55386459	55387459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91799.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	9.15	6.91	9.25	16.19	18.66	10.45	8.45	2.21	1.25
Merged-chr8-68837874-1	chr8	68837374	68838374	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42681.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.0	2.3	1.85	2.7	1.4	0.0	3.17	3.1	1.25
Merged-chr2-71327972-3	chr2	71327487	71328487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	39567.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	164.75	182.01	116.54	199.72	164.68	173.62	204.9	267.95	147.39
Merged-chr18-32837240-3	chr18	32836710	32837710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045381)	promoter-TSS (NR_045381)	-15.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	128.71	108.75	97.12	159.91	150.68	134.23	168.99	114.52	65.58
Merged-chr7-143052775-3	chr7	143052271	143053271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133655)	promoter-TSS (NM_133655)	21.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	182.49	198.14	239.56	141.02	161.88	155.13	132.02	193.67	150.51
Merged-chr1-118321807-3	chr1	118321332	118322332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-11.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	92.1	85.71	49.95	78.94	85.84	61.89	71.82	63.67	23.73
Merged-chr7-43349849-3	chr7	43349366	43350366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1475.0	NM_001271019	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	24.6	27.19	26.82	28.34	15.39	32.96	34.85	31.39	27.48
Merged-chr7-106693151-3	chr7	106692654	106693654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_146452	258444.0	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	32.04	13.82	11.1	18.89	14.0	8.04	15.84	11.5	14.36
Merged-chrX-19160486-3	chrX	19159996	19160996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13525.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	33.75	30.41	10.17	26.99	28.46	17.68	16.9	16.8	19.36
Merged-chr1-151819414-3	chr1	151818884	151819884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	64010.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	106.97	151.6	90.65	118.75	108.23	106.9	142.59	133.98	98.05
Merged-chr4-129542769-3	chr4	129542275	129543275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008228)	promoter-TSS (NM_008228)	-129.0	NM_008228	433759.0	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	93.82	91.24	67.52	91.76	69.98	86.81	76.05	63.67	39.97
Merged-chr13-12565764-3	chr13	12565266	12566266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026184)	promoter-TSS (NM_026184)	-117.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	93.24	75.11	44.4	87.71	81.64	65.91	68.65	91.97	42.47
Merged-chr11-75630895-3	chr11	75630396	75631396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008916)	promoter-TSS (NM_008916)	-124.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	128.71	80.64	66.6	125.5	89.1	61.09	98.23	105.24	47.46
Merged-chrX-38473681-3	chrX	38473189	38474189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17229.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	85.24	118.42	65.67	87.71	114.29	84.4	97.17	126.9	44.34
Merged-chr19-4097263-3	chr19	4096747	4097747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026373)	promoter-TSS (NM_026373)	-104.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	356.39	239.15	119.32	314.42	208.53	162.37	210.18	206.05	109.92
Merged-chr18-38350167-3	chr18	38349680	38350680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11187.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	78.94	95.84	54.57	71.52	72.31	75.56	97.17	114.08	69.95
Merged-chr10-34207345-3	chr10	34206844	34207844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172508, exon 1 of 6)	5' UTR (NM_172508, exon 1 of 6)	207.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	180.77	166.34	189.62	224.01	155.35	237.12	195.39	183.06	172.99
Merged-chr7-30167256-1	chr7	30166756	30167756	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011980, intron 1 of 1)	intron (NM_011980, intron 1 of 1)	2485.0	NM_011980	26465.0	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	3.43	1.38	0.0	2.02	1.4	4.02	39.08	33.16	26.23
Merged-chr16-91825980-3	chr16	91825483	91826483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 14 of 15)	intron (NM_001110276, intron 14 of 15)	96612.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	28.03	24.42	13.87	29.01	18.19	25.72	30.63	19.46	14.36
Merged-chr13-69383453-1	chr13	69382953	69383953	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150411.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	3.43	9.22	7.4	9.45	12.6	14.47	35.91	45.54	26.85
Merged-chr3-108911726-3	chr3	108911206	108912206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356292)	promoter-TSS (NM_001356292)	23.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	640.13	589.34	388.48	588.35	595.73	348.84	490.07	528.39	289.16
Merged-chr6-42424719-3	chr6	42424216	42425216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9819.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	36.61	35.94	15.72	42.51	26.12	28.13	27.46	23.43	24.98
Merged-chr3-27984102-3	chr3	27983589	27984589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008875)	promoter-TSS (NM_008875)	-82.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	116.13	120.26	64.75	99.86	90.97	81.18	120.41	99.93	53.71
Merged-chr10-52418114-3	chr10	52417591	52418591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030250, exon 1 of 5)	exon (NM_030250, exon 1 of 5)	544.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	319.78	315.18	227.54	360.97	378.34	314.28	328.47	270.16	221.71
Merged-chr1-67386145-2	chr1	67385651	67386651	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	263124.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	1.72	2.3	5.55	14.84	10.26	7.23	15.84	11.5	5.62
Merged-chr8-105827341-3	chr8	105826873	105827873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024445)	promoter-TSS (NM_024445)	-23.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	132.72	127.18	83.25	95.81	111.03	65.11	130.97	128.67	69.32
Merged-chr11-74832282-3	chr11	74831761	74832761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	1337.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	435.9	319.78	199.79	451.39	301.36	258.02	340.09	403.26	156.76
Merged-chr9-22119661-3	chr9	22119155	22120155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	137.86	146.53	92.5	117.4	88.64	147.9	128.85	139.28	104.92
Merged-chr10-21295953-3	chr10	21295473	21296473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145209)	promoter-TSS (NM_001145209)	-6.0	NM_001042593	56422.0	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	92.1	82.02	53.65	122.12	81.17	53.05	106.67	99.93	26.85
Merged-chr16-15887246-3	chr16	15886768	15887768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-18.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	183.63	212.42	185.92	160.58	171.68	184.87	144.7	165.37	156.13
Merged-chr5-149267109-3	chr5	149266606	149267606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 1 of 4)	intron (NM_009663, intron 1 of 4)	2102.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	176.19	206.89	146.14	183.52	213.66	146.29	128.85	180.85	97.43
Merged-chr7-66689762-3	chr7	66689254	66690254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003961)	promoter-TSS (NR_003961)	-135.0	NM_152815	72635.0	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	33.75	45.62	28.67	36.43	30.32	56.27	41.19	30.07	27.48
Merged-chr1-74661663-3	chr1	74661171	74662171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014974)	promoter-TSS (NM_001014974)	-83.0	NM_001014974	67534.0	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	32.61	43.31	28.67	33.74	33.59	32.15	23.24	27.41	28.73
Merged-chr6-120531310-3	chr6	120530803	120531803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-4.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	26.31	19.35	29.6	49.25	55.51	55.46	41.19	37.14	43.72
Merged-chr19-37511097-3	chr19	37510592	37511592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39326.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	55.49	53.91	53.65	39.81	26.12	36.97	49.64	56.6	53.08
Merged-chr3-96197221-3	chr3	96196721	96197721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026975, exon 2 of 2)	exon (NM_026975, exon 2 of 2)	365.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	122.42	154.36	78.62	137.64	169.34	77.16	107.73	106.12	51.84
Merged-chr2-144527529-3	chr2	144527021	144528021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029763)	promoter-TSS (NM_029763)	-107.0	NM_001360362	241688.0	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	84.66	60.36	67.52	79.62	68.58	66.71	83.44	53.06	48.71
Merged-chr11-93995834-3	chr11	93995316	93996316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	-275.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	561.18	507.78	305.23	626.14	525.76	347.24	417.19	613.73	230.45
Merged-chr11-3137963-1	chr11	3137463	3138463	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	Lx9|LINE|L1	13942.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	34.9	41.01	78.62	72.19	57.85	94.04	7.39	1.77	114.91
Merged-chr10-79908729-3	chr10	79908235	79909235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198107, intron 1 of 14)	CpG	203.0	NM_001163276	216154.0	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|DRIP92|Thrap5|Trap95	mediator complex subunit 16	protein-coding	195.64	203.67	172.04	213.21	163.28	192.91	251.37	218.43	123.66
Merged-chr10-40257650-3	chr10	40257162	40258162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	50.0	NM_001359491	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	120.7	151.6	140.59	128.2	118.96	135.84	184.83	190.57	115.54
Merged-chr18-25548587-3	chr18	25548061	25549061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	131187.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.86	8.29	2.77	10.12	7.0	8.04	7.39	3.98	1.25
Merged-chr3-52000273-3	chr3	51999767	52000767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104739.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	28.6	17.51	17.57	28.34	16.33	20.09	26.4	15.03	7.49
Merged-chr13-34276853-3	chr13	34276379	34277379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	68303.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	61.78	80.64	40.7	63.42	51.32	48.23	69.71	52.18	29.35
Merged-chr12-80790434-3	chr12	80789922	80790922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178682)	promoter-TSS (NM_178682)	-110.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	276.3	282.0	238.64	271.91	242.12	186.48	241.87	239.65	134.9
Merged-chr4-155735003-1	chr4	155734503	155735503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001101506, exon 1 of 4)	5' UTR (NM_001101506, exon 1 of 4)	199.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	110.98	89.85	125.79	146.41	107.76	141.47	122.52	84.45	58.71
Merged-chr1-88277620-3	chr1	88277125	88278125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-46.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	282.02	325.31	190.54	249.65	283.64	286.95	458.38	396.62	255.43
Merged-chr14-67234556-3	chr14	67234049	67235049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360202)	promoter-TSS (NM_001360202)	-95.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	6.29	5.07	9.25	2.7	0.93	0.0	4.22	0.44	3.12
Merged-chr17-23599220-3	chr17	23598734	23599734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011747, exon 1 of 6)	5' UTR (NM_011747, exon 1 of 6)	253.0	NM_011747	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	53.77	41.93	49.02	39.13	38.72	78.77	15.84	19.9	21.23
Merged-chr1-105922050-3	chr1	105921544	105922544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	68238.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	66.93	37.32	55.5	72.19	27.06	55.46	108.79	51.29	35.6
Merged-chr11-58183776-3	chr11	58183266	58184266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135115)	promoter-TSS (NM_001135115)	-77.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	56.06	80.64	57.35	49.93	45.72	36.97	66.54	79.59	61.83
Merged-chr12-73287809-3	chr12	73287305	73288305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037717, intron 1 of 15)	intron (NM_001037717, intron 1 of 15)	957.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	114.41	137.31	110.07	131.57	128.29	150.31	141.53	166.25	106.17
Merged-chr4-55741541-3	chr4	55741034	55742034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-209059.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	20.59	21.66	21.27	16.87	15.86	12.06	11.62	7.52	18.74
Merged-chr17-46341427-3	chr17	46340939	46341939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13416.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	120.7	112.43	65.67	105.26	97.5	126.19	141.53	153.87	106.79
Merged-chr13-101768278-3	chr13	101767777	101768777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077495)	promoter-TSS (NM_001077495)	-60.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	247.13	175.1	197.94	213.21	122.23	119.76	188.0	134.86	78.69
Merged-chr2-5845141-3	chr2	5844656	5845656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356501)	promoter-TSS (NM_001356501)	21.0	NM_001356502	98828.0	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	116.13	120.73	83.25	158.56	160.95	131.82	128.85	142.38	94.3
Merged-chr11-80172037-3	chr11	80171523	80172523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-11849.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	209.94	168.19	155.39	292.83	130.16	155.13	224.97	217.99	110.54
Merged-chr5-142629484-3	chr5	142628996	142629996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-88.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	74.94	64.51	110.99	70.17	53.18	77.16	72.88	72.07	53.08
Merged-chr7-19085643-4	chr7	19085064	19086064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032418, intron 1 of 14)	intron (NM_032418, intron 1 of 14)	-1264.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	149.88	110.59	118.39	174.75	109.16	161.56	315.8	242.31	146.14
Merged-chr8-84661703-3	chr8	84661206	84662206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010499, exon 1 of 1)	3' UTR (NM_010499, exon 1 of 1)	1146.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	356.39	334.99	251.59	327.91	277.11	233.9	289.39	315.71	198.6
Merged-chr3-137854077-3	chr3	137853560	137854560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10427.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	32.04	19.35	32.37	36.43	17.26	24.11	36.97	53.06	21.86
Merged-chr4-40700453-3	chr4	40699932	40700932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025444, intron 1 of 7)	intron (NM_001025444, intron 1 of 7)	2484.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	84.09	70.04	37.0	107.95	68.58	81.18	89.78	65.0	44.34
Merged-chr1-180401979-3	chr1	180401475	180402475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-71426.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	352.39	238.23	135.04	348.83	237.92	200.14	261.93	236.56	138.65
Merged-chr10-95372077-3	chr10	95371573	95372573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35797.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	21.17	13.82	7.4	24.96	7.93	6.43	17.96	16.36	14.99
Merged-chr11-53783438-3	chr11	53782930	53783930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12957.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	164.18	108.28	77.7	122.8	74.17	102.88	160.54	176.42	104.92
Merged-chr10-96502204-3	chr10	96501708	96502708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-114793.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	31.46	41.01	27.75	49.93	28.46	45.82	32.74	25.2	23.73
Merged-chr11-3147451-2	chr11	3146960	3147960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	RMER4B|LTR|ERVK	23439.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	54.35	85.25	133.19	89.06	108.23	200.95	1.06	1.33	141.14
Merged-chr14-105435423-3	chr14	105434920	105435920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045859, intron 2 of 2)	intron (NR_045859, intron 2 of 2)	7861.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	45.19	24.88	31.45	19.57	12.13	24.92	38.02	54.39	33.72
Merged-chr13-37498214-3	chr13	37497737	37498737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152892.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	14.3	15.67	2.77	18.22	14.46	8.04	2.11	1.77	1.25
Merged-chr2-31069728-3	chr2	31069243	31070243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	MTB_Mm|LTR|ERVL-MaLR	26757.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	67.5	53.91	61.05	93.79	75.11	68.32	84.49	61.02	64.33
Merged-chr18-46573030-3	chr18	46572528	46573528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173394, intron 1 of 2)	L2|LINE|L2	1505.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	51.48	78.33	59.2	46.56	66.71	66.71	81.33	76.49	58.08
Merged-chr13-119809122-3	chr13	119808647	119809647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-18025.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	72.08	85.71	51.8	72.19	54.11	68.32	120.41	98.6	55.58
Merged-chr19-5488029-1	chr19	5487529	5488529	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153768, exon 1 of 16)	non-coding (NR_153768, exon 1 of 16)	350.0	NM_027877	71711.0	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	86.95	82.48	90.65	72.87	70.44	77.97	91.89	128.67	74.94
Merged-chr6-87509299-3	chr6	87508797	87509797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	L1M4c|LINE|L1	-12970.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	89.81	95.38	40.7	70.85	46.65	65.11	52.81	64.11	30.6
Merged-chr18-5603689-3	chr18	5603178	5604178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	intron (NM_001360981, intron 2 of 8)	11031.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	35.47	34.56	24.05	26.31	17.73	22.51	44.36	22.11	24.36
Merged-chr12-34723263-3	chr12	34722767	34723767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	193828.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	65.21	62.67	50.87	80.29	69.51	56.27	70.76	63.23	49.34
Merged-chr19-23687413-3	chr19	23686939	23687939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028208)	promoter-TSS (NM_028208)	39.0	NM_028208	72351.0	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	80.66	76.03	55.5	80.97	68.11	89.22	104.56	55.27	55.58
Merged-chr14-76152268-1	chr14	76151768	76152768	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41377.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	185.35	228.55	168.34	144.39	196.87	157.54	192.23	200.3	114.29
Merged-chr4-141559354-3	chr4	141558849	141559849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13187.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	313.49	275.55	172.97	275.28	278.97	175.23	342.2	405.03	131.78
Merged-chr10-68241206-3	chr10	68240711	68241711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	37515.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	157.31	157.59	79.55	155.19	117.56	118.16	170.05	172.45	83.06
Merged-chr8-123374342-3	chr8	123373843	123374843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359076, intron 1 of 16)	CpG	632.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	444.49	445.12	283.96	400.78	366.21	276.5	400.29	415.2	189.86
Merged-chr16-17928796-3	chr16	17928302	17929302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153150)	promoter-TSS (NM_153150)	-583.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	96.68	118.88	58.27	76.24	83.97	73.95	83.44	64.56	49.34
Merged-chr11-47171359-3	chr11	47170862	47171862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 3 of 7)	intron (NM_011891, intron 3 of 7)	207940.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	12.59	15.21	26.82	13.49	15.39	24.92	16.9	17.24	8.12
Merged-chr11-44399091-3	chr11	44398576	44399576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-987.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	55.49	30.41	21.27	54.65	26.12	45.01	33.8	21.22	33.1
Merged-chr7-105744371-3	chr7	105743862	105744862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-24.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	271.73	177.86	201.64	181.5	161.41	155.13	251.37	198.09	131.78
Merged-chr11-117091992-3	chr11	117091489	117092489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14641.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	43.48	27.19	3.7	131.57	94.23	32.96	49.64	56.16	21.23
Merged-chr7-102244054-3	chr7	102243548	102244548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	6070.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	24.6	26.26	34.22	26.99	19.13	46.62	27.46	34.93	41.22
Merged-chr14-18239218-3	chr14	18238693	18239693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011584)	promoter-TSS (NM_011584)	-87.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	497.11	377.38	222.91	525.6	413.79	276.5	356.99	370.98	201.1
Merged-chr9-65215114-3	chr9	65214612	65215612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177460, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	422.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	58.35	49.3	39.77	113.35	127.36	141.47	78.16	68.09	61.83
Merged-chr17-87304550-3	chr17	87304041	87305041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	21655.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	143.59	164.96	103.59	167.33	174.94	139.06	97.17	122.48	54.96
Merged-chr5-92309964-3	chr5	92309411	92310411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172713, exon 1 of 22)	5' UTR (NM_172713, exon 1 of 22)	113.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	102.4	78.79	70.3	124.15	114.76	94.04	107.73	107.0	36.22
Merged-chr13-59771524-3	chr13	59771025	59772025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153538)	TTS (NM_153538)	1559.0	NR_015349	13996.0	Mm.490435	NR_015349		Etohd2	AW491659	ethanol decreased 2	ncRNA	112.12	143.76	143.37	113.35	124.56	110.12	125.69	140.61	88.06
Merged-chr4-63586351-3	chr4	63585815	63586815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356354)	TTS (NM_001356354)	14449.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	73.22	81.1	53.65	105.26	87.24	45.01	99.28	95.95	37.47
Merged-chr7-127480598-3	chr7	127480091	127481091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-4630.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	89.24	96.3	77.7	85.69	54.11	54.66	66.54	94.18	68.07
Merged-chr18-61120751-3	chr18	61120240	61121240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	3272.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	52.63	46.54	64.75	53.98	34.52	77.16	43.3	39.35	34.97
Merged-chr5-121584345-3	chr5	121583832	121584832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	9492.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	112.12	128.56	82.32	120.1	100.77	98.87	111.96	128.67	76.82
Merged-chr3-96727610-3	chr3	96727110	96728110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	-1.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	221.38	203.67	244.19	201.74	222.52	171.21	232.36	226.83	154.88
Merged-chr17-34153090-3	chr17	34152595	34153595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010387)	promoter-TSS (NM_010387)	-96.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	80.66	53.45	76.77	10.8	18.66	16.08	99.28	141.94	67.45
Merged-chr4-140975615-3	chr4	140975090	140976090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 5 of 7)	intron (NM_001355515, intron 5 of 7)	-11283.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	54.35	48.84	51.8	54.65	48.52	85.2	77.1	55.27	33.1
Merged-chr17-47695001-3	chr17	47694527	47695527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290337)	promoter-TSS (NM_001290337)	-180.0	NM_144939	107971.0	Mm.392206	NM_144939	ENSMUSG00000023266	Frs3	4930417B13Rik|AI449674|Frs2beta|Snt2	fibroblast growth factor receptor substrate 3	protein-coding	39.47	24.42	40.7	50.6	25.19	33.76	34.85	16.36	18.11
Merged-chr6-32184750-3	chr6	32184244	32185244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	134456.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	34.32	53.91	42.55	78.27	64.38	45.82	39.08	48.64	24.98
Merged-chr11-96824261-3	chr11	96823744	96824744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130454)	promoter-TSS (NM_001130454)	-117.0	NM_001130451	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	18.31	19.81	4.62	10.12	7.46	4.82	11.62	14.15	9.99
Merged-chr17-25833476-3	chr17	25832940	25833940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-79.0	NM_019719	56424.0	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	342.66	335.45	206.26	317.79	297.17	176.83	297.84	322.34	149.26
Merged-chr19-8920409-3	chr19	8919933	8920933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024256)	promoter-TSS (NM_024256)	40.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	188.21	133.17	184.99	201.07	111.96	163.17	204.9	155.64	94.3
Merged-chr17-67354623-3	chr17	67354137	67355137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008984)	promoter-TSS (NM_008984)	-146.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	332.36	234.08	165.57	327.91	264.04	235.51	264.05	241.42	139.27
Merged-chr17-3114645-1	chr17	3114145	3115145	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134123)	promoter-TSS (NM_134123)	-327.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	177.91	159.89	126.72	168.68	208.06	120.57	156.32	137.96	78.69
Merged-chr6-34910786-5	chr6	34910235	34911235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013366)	promoter-TSS (NM_001013366)	96.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	155.03	132.25	79.55	225.36	138.09	152.72	155.26	117.17	66.82
Merged-chr7-92638347-3	chr7	92637845	92638845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1203.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	125.85	183.85	74.0	77.59	83.04	85.2	73.93	132.21	53.08
Merged-chr10-111165656-3	chr10	111165123	111166123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	CpG	821.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	208.23	204.13	151.69	164.63	149.28	151.92	142.59	132.21	61.83
Merged-chr15-64059220-3	chr15	64058733	64059733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	531.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	209.94	223.94	127.64	201.07	188.0	214.61	178.5	259.11	142.39
Merged-chr18-15201711-3	chr18	15201230	15202230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50284.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	10.87	15.67	38.85	9.45	12.13	12.86	19.01	12.82	15.61
Merged-chr8-57591495-3	chr8	57591013	57592013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-60240.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	194.5	151.6	117.47	128.2	118.96	76.36	165.82	197.65	84.94
Merged-chr3-27236982-3	chr3	27236463	27237463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	MTC|LTR|ERVL-MaLR	53959.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	107.55	105.06	73.07	108.63	103.56	90.02	106.67	176.87	78.69
Merged-chr14-55681551-3	chr14	55681079	55682079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145705, exon 1 of 9)	exon (NM_145705, exon 1 of 9)	238.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	342.09	313.33	173.89	272.59	248.18	180.85	238.7	273.26	171.12
Merged-chr2-145806846-2	chr2	145806358	145807358	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20742.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	91.53	65.43	88.8	132.24	70.44	115.75	54.92	63.23	59.95
Merged-chr19-10240796-3	chr19	10240318	10241318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033481)	promoter-TSS (NM_001033481)	-70.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	5.15	3.23	5.55	10.8	0.47	4.82	7.39	0.44	1.87
Merged-chr1-134099301-3	chr1	134098795	134099795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11947.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	254.56	276.93	198.87	372.44	294.37	227.47	248.2	331.18	152.38
Merged-chr9-31280910-3	chr9	31280416	31281416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	9515.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	330.07	242.83	241.41	371.77	208.06	221.85	419.31	223.29	158.01
Merged-chr10-40525625-1	chr10	40525125	40526125	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44737.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	28.03	26.73	32.37	31.04	17.26	32.96	24.29	21.22	11.87
Merged-chr3-115789292-3	chr3	115788802	115789802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74247.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.72	4.61	5.55	18.89	11.66	11.25	12.67	8.4	8.12
Merged-chr2-165319675-3	chr2	165319158	165320158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1168.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	329.5	313.33	276.56	367.05	311.16	259.62	275.66	431.56	204.85
Merged-chr11-78697962-3	chr11	78697462	78698462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008702)	promoter-TSS (NM_008702)	-537.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	32.61	30.41	22.2	38.46	41.05	33.76	38.02	60.13	29.98
Merged-chr1-35869745-3	chr1	35869241	35870241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198659.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	46.91	54.83	22.2	8.77	5.13	3.22	8.45	6.63	3.75
Merged-chr9-63399235-3	chr9	63398727	63399727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027090)	promoter-TSS (NM_027090)	17.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	237.97	196.75	164.64	235.48	221.13	208.18	323.19	282.99	99.3
Merged-chr12-85964700-3	chr12	85964199	85965199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	114342.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	33.75	23.04	28.67	47.23	40.59	42.6	22.18	22.11	19.36
Merged-chr7-97696632-3	chr7	97696136	97697136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023671)	promoter-TSS (NM_023671)	-15.0	NR_154551	102641859.0	Mm.211743	NR_154551		Rsf1os2	Gm15623	remodeling and spacing factor 1, opposite strand 2	ncRNA	54.35	47.92	42.55	72.87	53.18	55.46	59.15	57.48	42.47
Merged-chr2-150861275-3	chr2	150860780	150861780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	B2_Mm2|SINE|B2	-18710.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	70.36	94.92	24.97	84.34	65.78	76.36	57.03	78.71	44.34
Merged-chrX-74373382-3	chrX	74372879	74373879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278271)	promoter-TSS (NM_001278271)	-30.0	NR_103489	100169864.0	Mm.3979	NM_001278271	ENSMUSG00000015290	Gm44504	Gm38419|Slc10a3-ubl4|SlcUbl4a|Tu11	predicted readthrough transcript (NMD candidate), 44504	protein-coding	53.77	60.36	44.4	64.77	62.98	29.74	62.31	80.47	43.09
Merged-chr3-52755122-3	chr3	52754594	52755594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	MIR|SINE|MIR	15370.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	28.03	12.44	3.7	13.49	5.6	12.86	30.63	21.67	14.99
Merged-chr3-108990329-3	chr3	108989827	108990827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 4 of 10)	intron (NM_001163567, intron 4 of 10)	37280.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	28.03	9.68	7.4	15.52	14.0	8.04	16.9	14.15	6.25
Merged-chr5-64202775-1	chr5	64202275	64203275	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	L1MB8|LINE|L1	-27582.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	9.15	12.9	18.5	25.64	20.53	45.82	39.08	20.34	14.99
Merged-chr5-100509443-3	chr5	100508940	100509940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8801.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	23.45	27.19	20.35	41.16	28.46	35.37	48.58	29.63	25.61
Merged-chr7-4866270-3	chr7	4865774	4866774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026158)	promoter-TSS (NM_026158)	-95.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	42.9	53.45	50.87	41.16	49.92	35.37	336.92	372.3	202.97
Merged-chr2-71924229-1	chr2	71923729	71924729	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	49325.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	2.29	2.3	1.85	2.7	3.73	4.82	47.53	50.41	18.74
Merged-chr11-88242076-2	chr11	88241556	88242556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37668.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	20.02	14.28	13.87	25.64	20.53	42.6	1.06	1.33	1.25
Merged-chr2-127086391-3	chr2	127085892	127086892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 4 of 7)	intron (NM_026678, intron 4 of 7)	15735.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	44.05	42.39	51.8	68.82	41.99	80.38	101.39	106.56	43.09
Merged-chr2-72978613-3	chr2	72978132	72979132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045269)	promoter-TSS (NR_045269)	649.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	155.6	138.7	152.62	180.82	123.62	108.51	171.1	96.83	76.82
Merged-chr15-102203512-3	chr15	102202989	102203989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289694)	promoter-TSS (NM_001289694)	-156.0	NM_001289694	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	102.4	111.05	140.59	122.12	90.04	122.18	133.08	91.53	91.81
Merged-chr5-139791473-3	chr5	139790983	139791983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010757)	promoter-TSS (NM_010757)	-53.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	389.57	287.53	208.11	350.85	357.81	194.52	276.72	269.72	138.65
Merged-chr11-54149989-3	chr11	54149484	54150484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	49060.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	55.49	44.7	30.52	65.45	27.06	23.31	40.14	47.31	29.35
Merged-chr2-71389155-3	chr2	71388657	71389657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026115)	promoter-TSS (NM_026115)	-103.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	369.55	339.14	221.99	342.08	346.62	245.96	328.47	424.04	181.74
Merged-chr9-78039246-3	chr9	78038748	78039748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12710.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	5.72	5.07	5.55	2.02	0.0	0.8	2.11	1.77	8.74
Merged-chr16-94566222-3	chr16	94565709	94566709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-3997.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	19.45	9.68	15.72	20.24	13.53	4.82	20.07	13.71	9.37
Merged-chr12-84762640-3	chr12	84762118	84763118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	intron (NM_023409, intron 2 of 3)	10494.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	303.19	352.04	236.79	287.43	271.51	221.04	314.74	372.3	181.11
Merged-chr12-112594673-3	chr12	112594176	112595176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5892.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	69.22	70.04	57.35	71.52	57.85	49.83	55.98	53.5	51.21
Merged-chr9-90216552-3	chr9	90216071	90217071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 9 of 12)	intron (NM_194334, intron 9 of 12)	53593.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	65.21	59.44	50.87	76.24	48.05	75.56	59.15	61.46	69.32
Merged-chr10-112160356-3	chr10	112159864	112160864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3257.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	5.15	5.53	1.85	4.72	3.27	3.22	2.11	3.54	5.0
Merged-chr13-34051804-3	chr13	34051269	34052269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 4 of 6)	intron (NM_026512, intron 4 of 6)	14128.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	81.8	87.09	74.0	73.54	80.24	61.89	51.75	56.6	30.6
Merged-chr2-167959014-3	chr2	167958504	167959504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	26677.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	74.37	90.77	63.82	93.11	66.24	71.54	73.93	76.05	40.59
Merged-chr15-50870326-3	chr15	50869827	50870827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	intron (NM_032000, intron 1 of 5)	18722.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	142.44	166.8	74.92	118.08	91.9	83.59	63.37	95.95	50.59
Merged-chr11-34063867-3	chr11	34063377	34064377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	16949.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	128.71	115.2	120.24	121.45	90.04	101.28	101.39	108.33	70.57
Merged-chr11-60811263-3	chr11	60810760	60811760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009171)	promoter-TSS (NM_009171)	5.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	46.91	29.49	30.52	37.11	24.26	30.54	45.42	38.03	14.36
Merged-chr3-95819456-3	chr3	95818962	95819962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-509.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	228.82	223.48	187.77	203.76	215.53	185.68	235.53	263.97	171.12
Merged-chr15-89180832-3	chr15	89180352	89181352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138749)	promoter-TSS (NM_138749)	-64.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	139.01	114.27	77.7	118.75	73.71	77.97	101.39	69.42	83.06
Merged-chr7-135758961-3	chr7	135758447	135759447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42568.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	30.32	30.87	25.9	35.09	29.39	38.58	23.24	38.91	17.49
Merged-chr6-4977637-3	chr6	4977124	4978124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	MTE2a|LTR|ERVL-MaLR	74304.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	74.94	70.04	39.77	61.4	72.31	53.85	69.71	53.94	19.36
Merged-chr4-70410482-3	chr4	70409977	70410977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145990)	promoter-TSS (NM_145990)	-42.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	66.36	68.66	48.1	71.52	43.85	56.27	92.94	81.36	34.97
Merged-chr18-9489731-5	chr18	9489281	9490281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39627.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	132.72	82.02	40.7	238.85	183.34	47.42	140.47	168.02	27.48
Merged-chr2-84678259-3	chr2	84677767	84678767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290751)	promoter-TSS (NM_001290751)	-93.0	NM_001290751	66958.0	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	38.33	26.73	27.75	26.31	20.06	20.9	40.14	26.97	13.12
Merged-chr10-81429764-3	chr10	81429257	81430257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-2584.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	221.96	190.3	178.52	290.13	150.68	155.13	210.18	220.64	132.4
Merged-chr15-57976552-3	chr15	57976044	57977044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9359.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	241.41	254.35	148.92	217.93	224.39	196.93	282.0	316.15	155.51
Merged-chr6-146642530-3	chr6	146642039	146643039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-40.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	169.9	170.49	110.99	157.21	168.88	140.66	171.1	161.39	111.17
Merged-chr3-115902506-3	chr3	115902005	115903005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027193, intron 4 of 7)	intron (NM_027193, intron 4 of 7)	14322.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	7.44	14.28	12.95	17.54	15.86	22.51	13.73	13.27	7.49
Merged-chr11-98789009-3	chr11	98788489	98789489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6527.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	145.3	111.51	74.92	185.55	77.44	93.24	177.44	179.96	64.33
Merged-chr15-35155841-3	chr15	35155326	35156326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019635)	promoter-TSS (NM_019635)	-20.0	NM_019635	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	45.76	46.08	59.2	34.41	37.79	46.62	43.3	30.07	16.24
Merged-chr8-122561386-3	chr8	122560889	122561889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6626.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	49.77	47.46	65.67	64.77	50.38	95.65	50.7	55.71	63.08
Merged-chrX-9460662-3	chrX	9460164	9461164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	8660.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	89.81	87.09	51.8	83.66	60.18	48.23	64.43	97.28	36.22
Merged-chr10-70201798-3	chr10	70201290	70202290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-2874.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	49.77	41.47	35.15	52.63	48.98	26.53	60.2	71.63	38.1
Merged-chr4-46450981-3	chr4	46450474	46451474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130889)	promoter-TSS (NM_130889)	48.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	96.68	79.25	78.62	99.86	85.37	92.44	97.17	83.13	56.21
Merged-chr12-82240866-3	chr12	82240362	82241362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-70487.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	19.45	26.73	12.95	39.81	32.19	50.64	26.4	35.37	15.61
Merged-chr8-115428219-3	chr8	115427708	115428708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	278686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	73.22	70.04	61.05	88.39	62.98	73.14	82.38	78.26	41.84
Merged-chr17-34561406-3	chr17	34560920	34561920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	45.19	47.0	23.12	31.04	23.79	34.56	36.97	41.56	48.71
Merged-chr10-58446444-2	chr10	58445937	58446937	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-415.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	545.74	572.29	308.93	531.68	461.84	337.59	477.4	689.34	301.02
Merged-chr15-9123203-3	chr15	9122718	9123718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 5 of 9)	intron (NM_013787, intron 5 of 9)	17236.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	83.52	82.94	86.95	55.33	63.91	69.13	73.93	70.3	43.72
Merged-chr14-54377322-3	chr14	54376805	54377805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	16464.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	122.42	128.1	93.42	151.81	126.42	132.63	60.2	63.67	29.35
Merged-chr16-21204609-3	chr16	21204075	21205075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010143)	promoter-TSS (NM_010143)	-220.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	32.04	23.5	14.8	12.82	15.39	28.94	15.84	22.99	12.49
Merged-chr17-46747458-3	chr17	46746959	46747959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001305988, exon 2 of 5)	exon (NM_001305988, exon 2 of 5)	4755.0	NM_001305989	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	22.88	24.42	38.85	25.64	20.53	23.31	25.35	26.97	16.24
Merged-chr6-91684033-3	chr6	91683550	91684550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009320)	promoter-TSS (NM_009320)	-17.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	243.69	240.07	296.91	271.24	203.86	216.22	264.05	264.86	179.24
Merged-chr19-5637433-3	chr19	5636865	5637865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-125.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	897.55	716.98	547.57	806.96	633.52	459.77	599.91	646.01	307.89
Merged-chr2-36272503-3	chr2	36272001	36273001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	42075.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	55.49	62.21	39.77	62.07	45.25	68.32	44.36	40.68	31.23
Merged-chr9-121277744-3	chr9	121277243	121278243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177589)	promoter-TSS (NM_177589)	-571.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	49.77	53.45	50.87	49.25	54.11	73.14	59.15	59.69	44.34
Merged-chr14-57798179-3	chr14	57797687	57798687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-2.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	155.6	138.7	147.99	154.51	136.22	200.95	164.76	147.24	100.55
Merged-chr6-29216357-3	chr6	29215848	29216848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	16.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	196.79	168.65	183.14	185.55	172.14	166.38	175.33	166.7	101.8
Merged-chr14-60273881-3	chr14	60273385	60274385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8680.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	98.39	115.66	82.32	77.59	61.11	84.4	64.43	77.38	79.32
Merged-chr13-102693506-3	chr13	102692995	102693995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008533)	promoter-TSS (NM_008533)	-52.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	277.45	272.32	172.97	303.62	167.48	204.97	301.01	367.44	136.77
Merged-chr10-95508984-3	chr10	95508498	95509498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6164.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	189.35	143.3	120.24	157.21	107.76	154.33	191.17	217.99	155.51
Merged-chr6-121183879-3	chr6	121183361	121184361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130903, exon 1 of 7)	non-coding (NR_130903, exon 1 of 7)	194.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	19.45	20.27	10.17	27.66	31.26	28.13	39.08	27.41	13.74
Merged-chr13-111805919-3	chr13	111805419	111806419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	3074.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	216.81	254.35	126.72	255.04	215.53	173.62	228.14	318.36	133.65
Merged-chr3-27210428-3	chr3	27209925	27210925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	27421.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	156.17	169.11	89.72	218.61	217.39	131.02	189.06	278.57	103.67
Merged-chr13-55329895-3	chr13	55329402	55330402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-172.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	20.02	7.83	11.1	21.59	14.93	38.58	22.18	19.46	5.0
Merged-chr11-52099341-3	chr11	52098804	52099804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019411, intron 1 of 6)	CpG	480.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	1011.39	916.96	727.94	955.4	927.89	647.05	806.93	780.87	464.65
Merged-chrUn_JH584304-7632-1	chrUn_JH584304	7132	8132	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	52057.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	54.92	46.43	0.0
Merged-chr3-104790997-3	chr3	104790510	104791510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1976.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	39.47	23.04	28.67	68.82	34.52	60.28	52.81	32.28	20.61
Merged-chr4-34386547-3	chr4	34386043	34387043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164072.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	90.96	89.39	36.07	79.62	67.18	45.82	67.6	53.06	44.97
Merged-chr11-97659666-3	chr11	97659175	97660175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3737.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	606.95	491.2	302.46	580.26	422.66	322.32	458.38	568.63	229.2
Merged-chr3-41742535-3	chr3	41742039	41743039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	-25.0	NM_001081411	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	262.57	246.06	204.41	221.31	180.54	159.95	254.54	226.39	131.15
Merged-chr3-8971829-3	chr3	8971330	8972330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MLT1J1|LTR|ERVL-MaLR	-7684.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	7.44	13.82	12.95	13.49	9.8	20.09	15.84	11.94	11.24
Merged-chr14-20842800-3	chr14	20842305	20843305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008873, exon 11 of 11)	3' UTR (NM_008873, exon 11 of 11)	6143.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	88.1	89.85	66.6	51.95	51.32	28.13	107.73	106.56	56.83
Merged-chr17-45746960-3	chr17	45746464	45747464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	12458.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	16.59	9.68	1.85	25.64	10.73	4.82	8.45	5.75	5.0
Merged-chr19-55803283-3	chr19	55802784	55803784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	61474.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	25.74	14.75	14.8	26.99	14.93	21.7	22.18	12.82	6.25
Merged-chr19-6910098-3	chr19	6909593	6910593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	13.0	NM_012021	54683.0	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	602.37	465.39	398.65	526.95	476.77	334.38	454.16	531.48	249.19
Merged-chr3-108554763-3	chr3	108554252	108555252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028538)	promoter-TSS (NR_028538)	-350.0	NR_028538	100217438.0		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	128.71	95.84	96.2	91.76	88.64	80.38	101.39	94.62	59.95
Merged-chr1-46852870-3	chr1	46852374	46853374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	CpG	744.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	340.94	257.58	315.41	348.83	262.64	201.75	256.65	191.46	163.0
Merged-chr4-120925053-3	chr4	120924550	120925550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-45.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	157.89	137.31	142.44	126.17	113.83	110.92	127.8	175.1	88.68
Merged-chr18-76241848-3	chr18	76241342	76242342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010754, exon 1 of 11)	5' UTR (NM_010754, exon 1 of 11)	141.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	210.52	160.81	193.32	210.51	133.42	175.23	297.84	151.22	108.67
Merged-chr1-176828189-3	chr1	176827709	176828709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	7924.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	86.95	78.33	81.4	111.33	98.9	102.08	128.85	180.4	96.18
Merged-chr12-85455370-3	chr12	85454854	85455854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18536.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	207.66	167.73	84.17	179.47	167.94	91.63	125.69	170.23	95.55
Merged-chr8-69774935-3	chr8	69774348	69775348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177899)	promoter-TSS (NM_177899)	63.0	NM_177899	330788.0	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	161.89	205.51	159.09	143.71	178.67	101.28	178.5	142.82	104.3
Merged-chr14-70024892-3	chr14	70024396	70025396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-52549.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	16.02	11.98	9.25	7.42	2.33	6.43	12.67	4.86	13.12
Merged-chr2-51089069-3	chr2	51088564	51089564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60047.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	123.56	109.21	55.5	97.16	68.11	44.21	72.88	73.4	46.22
Merged-chr9-75314204-3	chr9	75313719	75314719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073186, exon 1 of 12)	non-coding (NR_073186, exon 1 of 12)	151.0	NM_138719	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	16.02	23.04	9.25	54.65	48.98	38.58	31.69	25.2	15.61
Merged-chr15-99388291-3	chr15	99387831	99388831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4616.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	101.83	82.02	70.3	101.21	66.24	77.16	74.99	64.56	49.34
Merged-chr1-64121720-3	chr1	64121236	64122236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-347.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	453.64	367.71	292.29	452.06	453.91	281.33	342.2	387.34	220.46
Merged-chr2-170153788-3	chr2	170153249	170154249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11074.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	136.72	138.24	95.27	143.04	122.23	140.66	172.16	246.29	139.89
Merged-chrX-73967700-3	chrX	73967194	73968194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1337.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	225.96	219.79	123.02	173.4	189.87	134.23	182.72	223.74	122.41
Merged-chr10-85957790-3	chr10	85957278	85958278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145422)	promoter-TSS (NM_145422)	15.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	111.55	108.75	64.75	93.11	105.43	97.26	98.23	100.37	66.82
Merged-chr13-92274660-3	chr13	92274141	92275141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 14 of 23)	intron (NM_001311120, intron 14 of 23)	-80142.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	24.03	18.43	5.55	29.01	40.59	20.09	15.84	22.99	24.98
Merged-chr15-89123154-3	chr15	89122664	89123664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163319)	promoter-TSS (NM_001163319)	-14.0	NM_001163319	328580.0	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	92.1	105.06	67.52	76.92	106.83	87.61	105.62	84.9	47.46
Merged-chrX-103493484-3	chrX	103492980	103493980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015508)	promoter-TSS (NR_015508)	-78.0	NR_015508	70252.0	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	131.0	135.47	88.8	122.8	131.56	93.24	143.64	134.42	76.82
Merged-chr2-152739553-6	chr2	152739132	152740132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3381.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	96.68	80.64	84.17	84.34	41.52	48.23	83.44	55.71	55.58
Merged-chr11-59191921-3	chr11	59191430	59192430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008193)	promoter-TSS (NM_008193)	22.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	161.89	113.81	135.97	113.35	100.3	120.57	120.41	157.85	101.17
Merged-chr2-124690572-3	chr2	124690064	124691064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	36983.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	101.25	91.24	78.62	78.94	73.71	118.16	100.34	104.79	64.33
Merged-chr13-112365958-3	chr13	112365440	112366440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	77422.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	19.45	23.04	12.95	26.99	28.92	27.33	20.07	9.73	35.6
Merged-chr9-20973867-3	chr9	20973324	20974324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	2969.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	31.46	29.95	31.45	41.16	17.73	24.11	20.07	20.78	21.23
Merged-chr1-180296237-3	chr1	180295747	180296747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-34229.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	77.8	49.3	54.57	73.54	50.85	83.59	53.87	54.83	48.09
Merged-chr11-29547815-3	chr11	29547294	29548294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028504)	promoter-TSS (NM_028504)	-156.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	112.69	163.12	115.62	138.32	159.08	166.38	184.83	174.21	120.53
Merged-chr4_GL456216_random-17295-1	chr4_GL456216_random	16795	17795	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 1 of 6)	intron (NM_001033326, intron 1 of 6)	1414.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	257.71	355.06	0.0
Merged-chr19-8967021-3	chr19	8966532	8967532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026007)	promoter-TSS (NM_026007)	-9.0	NM_026007	67160.0	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	205.94	221.64	129.49	185.55	181.94	105.3	167.93	176.42	87.43
Merged-chr19-24281557-2	chr19	24281051	24282051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008044)	promoter-TSS (NM_008044)	-965.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	18.88	11.06	9.25	4.05	3.27	12.06	7.39	6.19	5.0
Merged-chr19-40630825-3	chr19	40630325	40631325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MDa|LINE|L1	18459.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	217.95	223.02	118.39	175.43	180.07	185.68	174.27	250.71	116.79
Merged-chr16-75917854-3	chr16	75917339	75918339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	10.3	11.98	12.95	9.45	8.86	16.08	3.17	3.98	5.62
Merged-chr10-61680254-3	chr10	61679782	61680782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358488)	promoter-TSS (NM_001358488)	-3.0	NM_001358488	20224.0	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	441.63	325.31	268.24	392.69	230.92	225.86	355.93	265.3	173.62
Merged-chr1-170311533-1	chr1	170311033	170312033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039593, intron 1 of 1)	intron (NM_001039593, intron 1 of 1)	2672.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	4.0	4.61	1.85	2.02	2.33	4.82	1.06	0.44	3.12
Merged-chr12-71015814-3	chr12	71015306	71016306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	17.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	257.42	251.59	194.24	216.58	210.4	143.88	188.0	219.31	144.27
Merged-chr8-106683566-3	chr8	106683061	106684061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	493.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	54.35	42.39	73.07	37.11	37.32	63.5	101.39	77.82	43.09
Merged-chr14-65343788-3	chr14	65343283	65344283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-14893.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	81.23	88.47	53.65	68.15	59.71	90.83	103.51	90.64	86.18
Merged-chr2-173769376-3	chr2	173768867	173769867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31796.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	22.88	35.48	45.32	35.76	41.05	52.25	53.87	47.31	49.96
Merged-chr16-10476098-3	chr16	10475575	10476575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3997.0	NM_001302619	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	82.95	90.77	80.47	60.05	62.98	73.14	104.56	84.01	82.44
Merged-chr18-24121787-4	chr18	24121244	24122244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172625)	promoter-TSS (NM_172625)	75.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	143.59	161.74	138.74	150.46	172.14	159.95	195.39	197.65	82.44
Merged-chr13-119690251-3	chr13	119689757	119690757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145942)	promoter-TSS (NM_145942)	-94.0	NM_145942	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	77.8	89.39	61.97	76.24	66.71	52.25	76.05	67.21	38.1
Merged-chr11-59543506-3	chr11	59543032	59544032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	L1MB2|LINE|L1	846.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	492.54	458.94	216.44	456.11	395.6	270.07	284.11	395.3	180.49
Merged-chr16-85152642-3	chr16	85152145	85153145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	URR1B|DNA|hAT-Charlie	21062.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	55.49	54.37	40.7	71.52	69.04	90.83	30.63	31.39	21.23
Merged-chr10-28520133-2	chr10	28519644	28520644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-148216.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	10.3	3.23	2.77	8.77	3.73	5.63	2.11	1.33	3.75
Merged-chr13-102700987-3	chr13	102700487	102701487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	7429.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	73.79	54.37	47.17	45.88	37.32	56.27	59.15	50.41	23.11
Merged-chr1-170262520-1	chr1	170262020	170263020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6781.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	14.87	15.67	12.95	4.05	1.4	1.61	2.11	3.98	0.0
Merged-chr16-91546627-3	chr16	91546128	91547128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008338)	promoter-TSS (NM_008338)	-466.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	283.74	211.5	113.77	240.87	124.09	170.4	237.64	220.2	157.38
Merged-chr6-116673824-3	chr6	116673358	116674358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-22.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	160.75	141.46	112.84	148.44	94.23	147.09	172.16	172.0	115.54
Merged-chr4-139252608-3	chr4	139252118	139253118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	58090.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	103.54	80.18	86.95	99.18	84.9	114.14	111.96	130.0	72.45
Merged-chr11-95858802-3	chr11	95858352	95859352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045187)	promoter-TSS (NR_045187)	35.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	191.64	206.43	201.64	258.42	252.85	231.49	230.25	316.15	139.27
Merged-chr4-116123775-3	chr4	116123269	116124269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009015)	promoter-TSS (NM_009015)	-71.0	NR_131048	76786.0	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	12.01	17.97	20.35	12.82	8.4	9.65	17.96	15.03	12.49
Merged-chr10-9902121-3	chr10	9901619	9902619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1079.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	18.31	6.91	12.02	21.59	12.13	27.33	15.84	21.22	14.99
Merged-chrX-7728415-3	chrX	7727902	7728902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138602)	promoter-TSS (NM_138602)	-169.0	NM_138602	54637.0	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	33.75	31.79	27.75	26.99	29.86	44.21	26.4	23.88	9.99
Merged-chr17-43032667-3	chr17	43032189	43033189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16134.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	148.16	134.09	111.92	118.75	87.24	106.9	103.51	91.53	81.81
Merged-chr1-42851216-3	chr1	42850731	42851731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023514)	promoter-TSS (NM_023514)	-2.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	54.35	63.59	42.55	57.35	54.11	64.3	63.37	73.4	67.45
Merged-chr1-191878140-3	chr1	191877656	191878656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28625.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	121.85	98.61	76.77	113.35	70.91	91.63	134.14	137.96	64.95
Merged-chr2-32961666-3	chr2	32961114	32962114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009076)	promoter-TSS (NM_009076)	-98.0	NM_009076	269261.0	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	143.01	122.57	106.37	205.11	163.74	124.59	153.15	145.47	51.84
Merged-chrX-151803210-3	chrX	151802701	151803701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021523)	promoter-TSS (NM_021523)	-81.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	155.6	167.26	139.67	157.88	174.94	132.63	151.03	180.4	116.79
Merged-chr4-40723249-3	chr4	40722738	40723738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077221)	promoter-TSS (NR_077221)	308.0	NM_001164672	15502.0	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	207.66	142.84	185.92	180.15	181.47	152.72	119.35	154.32	186.11
Merged-chr1-138262580-3	chr1	138262066	138263066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-11172.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	49.2	44.24	29.6	53.3	21.93	36.97	47.53	34.05	39.97
Merged-chr7-100159711-3	chr7	100159227	100160227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026010, exon 1 of 2)	exon (NM_026010, exon 1 of 2)	450.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	117.27	86.17	109.14	140.34	123.62	115.75	126.74	121.6	88.06
Merged-chr2-102745922-3	chr2	102745407	102746407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153852, exon 2 of 3)	non-coding (NR_153852, exon 2 of 3)	853.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	217.38	192.15	105.44	176.78	125.49	99.67	115.12	123.36	86.81
Merged-chr16-17807574-3	chr16	17807046	17808046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153790, exon 11 of 11)	exon (NM_153790, exon 11 of 11)	10264.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	2.86	1.84	11.1	7.42	3.27	0.0	6.34	3.98	2.5
Merged-chr12-32953991-3	chr12	32953495	32954495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_044986)	promoter-TSS (NR_044986)	50.0	NM_013635	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	169.9	196.29	118.39	149.79	139.02	147.09	178.5	158.74	76.82
Merged-chr8-84969573-3	chr8	84969071	84970071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-51.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	47.48	47.46	51.8	41.16	34.52	77.16	105.62	88.43	71.2
Merged-chr5-137503007-2	chr5	137502505	137503505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028753)	promoter-TSS (NM_028753)	-576.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	34.32	22.12	36.07	37.11	25.66	56.27	32.74	31.84	21.86
Merged-chr12-78861684-3	chr12	78861191	78862191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	-53.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	228.25	222.56	136.89	275.96	259.85	170.4	256.65	261.32	116.16
Merged-chrX-51018109-3	chrX	51017604	51018604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172413)	promoter-TSS (NM_172413)	-86.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	147.02	130.4	103.59	123.47	85.84	132.63	157.37	85.34	81.81
Merged-chr4-63409493-3	chr4	63408987	63409987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6042.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	58.35	48.38	27.75	56.0	27.52	23.31	61.26	28.74	15.61
Merged-chr12-12262167-3	chr12	12261693	12262693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029758)	promoter-TSS (NM_029758)	54.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	96.11	72.34	98.05	90.41	57.38	87.61	94.0	88.43	56.83
Merged-chr10-40142317-3	chr10	40141817	40142817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028247)	promoter-TSS (NM_028247)	-63.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	131.0	88.93	90.65	161.26	129.22	114.94	124.63	104.35	65.58
Merged-chr9-70503313-3	chr9	70502810	70503810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357494)	promoter-TSS (NM_001357494)	68.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	356.39	272.78	313.56	309.7	198.27	223.45	412.97	263.97	147.39
Merged-chr15-9131168-3	chr15	9130646	9131646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	9308.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	257.42	284.3	174.82	267.86	242.58	219.43	197.51	279.45	119.28
Merged-chr18-77967046-3	chr18	77966534	77967534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 12 of 43)	intron (NM_001195633, intron 12 of 43)	28567.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	41.76	62.21	33.3	39.13	27.52	59.48	71.82	46.87	45.59
Merged-chr3-55627272-3	chr3	55626790	55627790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 57 of 57)	intron (NM_030595, intron 57 of 57)	-155220.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	28.03	16.13	18.5	15.52	12.6	18.49	21.12	7.96	11.87
Merged-chr7-45339453-3	chr7	45338981	45339981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010473)	TTS (NM_010473)	4212.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	52.06	39.17	41.62	94.46	46.18	45.01	71.82	34.93	26.23
Merged-chr3-108050686-3	chr3	108050177	108051177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-5818.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	14.87	16.13	23.12	31.71	15.86	21.7	30.63	26.97	6.87
Merged-chr15-100469020-3	chr15	100468529	100469529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357982)	promoter-TSS (NM_001357982)	18.0	NM_134093	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	92.1	69.12	74.92	105.26	76.97	81.18	117.24	72.96	42.47
Merged-chr10-66932772-3	chr10	66932275	66933275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12391.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	54.92	39.63	34.22	72.19	32.66	33.76	32.74	39.8	22.48
Merged-chr13-90089629-3	chr13	90089120	90090120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	-12.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	101.83	106.9	91.57	78.94	87.24	134.23	125.69	136.19	99.92
Merged-chr10-87831766-1	chr10	87831266	87832266	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-26499.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	139.01	165.88	113.77	181.5	160.95	155.93	201.73	343.56	117.41
Merged-chr8-22805709-3	chr8	22805195	22806195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122820)	promoter-TSS (NM_001122820)	-41.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	60.64	59.44	38.85	43.86	36.39	42.6	66.54	71.63	49.34
Merged-chr7-125596607-3	chr7	125596119	125597119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-6810.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	84.66	92.16	68.45	40.48	48.52	50.64	109.84	107.45	50.59
Merged-chr1-191097966-1	chr1	191097466	191098466	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-448.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	197.93	165.42	189.62	208.49	176.81	174.42	197.51	199.42	118.04
Merged-chr1-151755199-3	chr1	151754698	151755698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151473)	promoter-TSS (NR_151473)	-176.0	NM_001311165	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	144.16	160.35	108.22	188.92	119.43	102.08	163.71	162.72	74.32
Merged-chr15-88509189-3	chr15	88508674	88509674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91128.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	58.92	43.77	31.45	53.3	38.25	21.7	52.81	42.89	23.73
Merged-chr2-18392804-3	chr2	18392267	18393267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007869)	promoter-TSS (NM_007869)	63.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	93.82	80.18	86.02	93.79	95.17	102.88	68.65	54.83	51.84
Merged-chr8-46845163-3	chr8	46844637	46845637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 7 of 7)	intron (NR_152560, intron 7 of 7)	105392.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	177.34	107.36	108.22	154.51	76.04	149.5	147.87	141.94	112.42
Merged-chr16-87354342-3	chr16	87353827	87354827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159331, exon 1 of 5)	exon (NM_001159331, exon 1 of 5)	142.0	NM_026366	67768.0	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	100.68	130.4	91.57	99.86	127.82	135.04	148.92	120.71	82.44
Merged-chr12-28732777-3	chr12	28732310	28733310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	17584.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	73.79	103.22	59.2	89.06	76.97	120.57	149.98	178.64	79.32
Merged-chr13-48842449-3	chr13	48841947	48842947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	28438.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	20.02	7.37	3.7	12.14	7.46	0.8	6.34	5.31	5.0
Merged-chr8-119812082-3	chr8	119811582	119812582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	L1MB7|LINE|L1	28497.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	80.66	47.46	54.57	60.05	52.25	59.48	85.55	85.34	26.23
Merged-chr3-127780480-3	chr3	127779978	127780978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027808)	promoter-TSS (NM_027808)	49.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	243.12	243.75	100.82	218.61	193.6	159.15	176.38	220.2	117.41
Merged-chr13-119488488-3	chr13	119488032	119489032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	-148.0	NR_027974	67304.0	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	41.19	26.26	18.5	39.81	34.52	32.15	42.25	34.05	46.84
Merged-chr5-44383199-1	chr5	44382699	44383699	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-156593.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	2.29	2.3	9.25	4.05	5.13	1.61	2.11	3.54	3.12
Merged-chr1-86434564-3	chr1	86434072	86435072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8243.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	228.82	175.56	112.84	230.75	150.22	94.85	130.97	75.17	93.68
Merged-chr7-130834488-3	chr7	130833985	130834985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-31239.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.57	0.46	0.0	1.35	1.4	0.8	1.06	0.44	0.0
Merged-chr19-17276156-1	chr19	17275656	17276656	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	63349.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.15	4.15	0.92	2.02	2.33	4.82	132.02	168.47	65.58
Merged-chr2-36214238-3	chr2	36213732	36214732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16194.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	50.91	52.99	18.5	50.6	51.78	19.29	68.65	65.88	28.1
Merged-chr8-27042752-5	chr8	27042272	27043272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039077, intron 1 of 4)	CpG	217.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	455.35	377.84	284.89	518.18	477.7	313.48	393.96	387.34	191.11
Merged-chr11-75769426-3	chr11	75768916	75769916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007873, exon 9 of 9)	3' UTR (NM_007873, exon 9 of 9)	-26393.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	26.31	17.97	11.1	22.94	14.0	29.74	25.35	17.24	9.37
Merged-chr4-41569667-3	chr4	41569200	41570200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159583)	promoter-TSS (NM_001159583)	-94.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	37.18	35.48	25.9	51.28	52.72	41.8	155.26	124.69	53.08
Merged-chr4-55531015-1	chr4	55530515	55531515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010637, intron 2 of 4)	CpG	1460.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	56.63	59.9	29.6	63.42	44.32	43.4	46.47	31.39	29.98
Merged-chr8-80948614-3	chr8	80948104	80949104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66302.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	87.52	99.99	64.75	128.2	75.11	116.55	96.11	63.67	43.72
Merged-chr11-118355374-3	chr11	118354886	118355886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	25.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	69.22	58.98	58.27	53.98	50.38	60.28	60.2	43.77	39.35
Merged-chr11-113732951-1	chr11	113732451	113733451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	18209.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	15.45	15.21	14.8	2.7	1.87	8.84	3.17	1.33	3.12
Merged-chr10-94462922-3	chr10	94462437	94463437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-51920.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	220.24	223.48	115.62	258.42	217.39	129.41	157.37	206.49	104.3
Merged-chr5-36713332-3	chr5	36712792	36713792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17271.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	78.37	73.26	74.92	84.34	80.24	91.63	114.07	118.06	74.94
Merged-chr6-149188771-3	chr6	149188267	149189267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113424)	promoter-TSS (NM_001113424)	-55.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	244.84	293.06	232.16	251.67	251.91	172.81	250.32	279.01	149.26
Merged-chr10-118868065-3	chr10	118867572	118868572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	CpG	831.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	326.64	271.4	245.11	365.7	257.98	209.79	349.6	318.36	240.44
Merged-chr3-108855559-3	chr3	108855028	108856028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-15026.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	228.82	194.91	68.45	114.7	54.11	30.54	141.53	109.22	52.46
Merged-chr16-55623604-3	chr16	55623100	55624100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128869.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	38.33	28.11	18.5	31.71	21.93	22.51	30.63	25.65	24.98
Merged-chr8-35679202-3	chr8	35678706	35679706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-90186.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	25.74	35.48	37.0	51.95	34.99	54.66	39.08	30.95	32.48
Merged-chr8-112011373-3	chr8	112010887	112011887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	28.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	55.49	60.36	74.0	66.8	53.18	102.88	53.87	53.5	35.6
Merged-chr10-20725161-3	chr10	20724704	20725704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013875)	promoter-TSS (NM_013875)	-126.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	112.12	128.1	63.82	112.68	104.5	57.87	96.11	152.55	46.84
Merged-chr5-148311049-3	chr5	148310562	148311562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359511, intron 6 of 6)	MuRRS-int|LTR|ERV1	45845.0	NM_001359505	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	29.17	28.11	20.35	36.43	21.93	27.33	44.36	32.28	33.72
Merged-chr4-72425491-3	chr4	72424993	72425993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	224249.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	29.75	21.66	7.4	27.66	10.73	7.23	19.01	8.4	8.74
Merged-chr2-79696676-3	chr2	79696169	79697169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	68.07	59.44	25.9	101.21	55.05	58.68	66.54	59.69	42.47
Merged-chr4-150486277-3	chr4	150485759	150486759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	165915.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	167.04	131.78	84.17	163.96	138.55	110.92	133.08	140.17	56.21
Merged-chr6-87851142-3	chr6	87850686	87851686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013493)	promoter-TSS (NM_013493)	-80.0	NM_001355195	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	386.71	395.81	225.69	385.26	391.4	295.79	288.34	259.11	187.36
Merged-chr8-41024438-3	chr8	41023965	41024965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015457)	TTS (NR_015457)	6997.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	26.89	41.01	40.7	33.06	37.32	47.42	81.33	73.84	53.08
Merged-chrX-152016334-3	chrX	152015806	152016806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019710)	promoter-TSS (NM_019710)	-11.0	NM_025660	66611.0	Mm.158120	NM_025660	ENSMUSG00000025257	Ribc1	2610028I09Rik|W08639	RIB43A domain with coiled-coils 1	protein-coding	116.13	141.92	97.12	98.51	108.7	86.01	101.39	135.3	66.2
Merged-chrX-159735681-3	chrX	159735171	159736171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	27070.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	44.05	27.19	6.47	51.95	31.26	10.45	36.97	34.05	17.49
Merged-chr10-117818759-3	chr10	117818207	117819207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 5 of 7)	intron (NM_024457, intron 5 of 7)	-26002.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	118.42	107.82	50.87	101.21	86.77	91.63	86.61	80.47	47.46
Merged-chr10-51529095-3	chr10	51528558	51529558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	38160.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	173.33	208.74	122.09	160.58	209.93	173.62	237.64	255.13	146.76
Merged-chr1-151601543-3	chr1	151601047	151602047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	30174.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	184.2	201.36	115.62	155.86	116.63	110.12	108.79	132.65	117.41
Merged-chr19-12501666-3	chr19	12501161	12502161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172442, exon 1 of 9)	5' UTR (NM_172442, exon 1 of 9)	335.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	143.59	73.26	55.5	163.96	102.17	110.12	80.27	38.91	32.48
Merged-chr2-140066790-3	chr2	140066287	140067287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110350)	promoter-TSS (NR_110350)	18.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	291.75	287.07	191.47	258.42	259.38	159.15	297.84	220.64	143.64
Merged-chr19-24989089-3	chr19	24988580	24989580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10449.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	49.2	40.55	58.27	51.28	31.26	45.01	67.6	62.35	47.46
Merged-chr8-13869711-3	chr8	13869199	13870199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181854)	promoter-TSS (NM_181854)	58.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	36.04	36.86	45.32	39.13	39.19	50.64	62.31	31.84	12.49
Merged-chrX-167209165-3	chrX	167208660	167209660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021278)	promoter-TSS (NM_021278)	58.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	123.56	142.38	137.82	118.08	80.71	124.59	133.08	155.64	109.92
Merged-chr2-173276609-3	chr2	173276131	173277131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022995)	promoter-TSS (NM_022995)	-98.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	4.0	2.3	3.7	14.17	7.93	9.65	4.22	3.54	5.62
Merged-chr8-53496426-3	chr8	53495934	53496934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15268.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	14.3	13.36	19.42	22.94	20.99	19.29	13.73	16.8	13.74
Merged-chr7-43562206-3	chr7	43561694	43562694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008549)	promoter-TSS (NM_001008549)	-176.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	99.54	107.36	93.42	82.32	86.3	87.61	120.41	144.59	99.92
Merged-chr3-142620643-3	chr3	142620141	142621141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-22.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	354.1	449.26	307.08	334.66	300.43	249.98	242.92	282.1	150.51
Merged-chr19-12005705-3	chr19	12005214	12006214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31026.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	121.85	123.49	61.97	118.75	113.36	102.88	132.02	138.84	67.45
Merged-chr12-3360190-3	chr12	3359688	3360688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4944.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	121.28	183.39	134.12	130.22	151.15	134.23	246.09	284.31	133.65
Merged-chrX-13765884-3	chrX	13765387	13766387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 4)	Lx3C|LINE|L1	46034.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	16.59	19.35	12.95	19.57	14.93	10.45	15.84	22.99	8.12
Merged-chr2-181244131-3	chr2	181243617	181244617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2090.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	93.24	104.14	81.4	79.62	74.17	83.59	101.39	118.94	63.08
Merged-chr12-85596089-3	chr12	85595599	85596599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3006.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	39.47	12.44	7.4	36.43	10.73	20.9	24.29	11.5	6.25
Merged-chr8-84257286-3	chr8	84256778	84257778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026423)	promoter-TSS (NM_026423)	46.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	67.5	55.75	58.27	70.17	61.58	72.34	49.64	36.7	49.34
Merged-chr5-124540669-3	chr5	124540168	124541168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019770)	promoter-TSS (NM_019770)	-123.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	167.61	94.92	149.84	155.19	88.17	110.12	134.14	73.4	84.31
Merged-chr6-15726650-3	chr6	15726140	15727140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	5979.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	34.32	28.11	22.2	33.06	27.99	32.96	12.67	20.78	24.36
Merged-chr3-137869592-3	chr3	137869086	137870086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	L1MB2|LINE|L1	1911.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	63.5	78.79	56.42	74.22	62.05	72.34	91.89	88.88	51.21
Merged-chr16-84967220-3	chr16	84966726	84967726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 13 of 15)	intron (NM_001198825, intron 13 of 15)	-4985.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	54.35	44.24	31.45	39.13	31.26	42.6	39.08	35.82	14.99
Merged-chr5-9101150-3	chr5	9100651	9101651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 1 of 4)	CpG	414.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	187.63	127.64	164.64	184.87	98.43	114.94	182.72	91.97	99.3
Merged-chr9-106367838-3	chr9	106367340	106368340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-792.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	129.86	126.25	135.97	101.88	104.96	116.55	154.2	168.02	81.19
Merged-chr8-94191295-3	chr8	94190764	94191764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	12175.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	189.35	114.27	64.75	186.22	103.1	88.42	171.1	146.36	79.32
Merged-chr8-68195581-3	chr8	68195026	68196026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81002.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	150.45	216.11	131.34	152.49	118.49	98.87	116.18	118.94	94.93
Merged-chr1-131659721-3	chr1	131659224	131660224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	21410.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	17.16	20.27	15.72	22.94	14.0	3.22	32.74	20.78	7.49
Merged-chr1-155050357-3	chr1	155049840	155050840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32924.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	256.85	244.22	124.87	241.55	208.53	149.5	224.97	283.87	116.79
Merged-chr17-47873645-3	chr17	47873112	47874112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 13 of 16)	intron (NM_028767, intron 13 of 16)	-38921.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	16.02	13.82	24.05	21.59	18.19	21.7	14.79	11.94	20.61
Merged-chr19-53329423-3	chr19	53328940	53329940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360345)	promoter-TSS (NM_001360345)	27.0	NM_001360345	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	55.49	39.63	40.7	66.12	53.18	73.95	85.55	32.72	38.1
Merged-chr15-6341660-3	chr15	6341184	6342184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	41895.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	30.89	36.86	41.62	36.43	52.25	40.99	38.02	32.28	31.85
Merged-chr12-37241763-3	chr12	37241276	37242276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178767, exon 1 of 13)	5' UTR (NM_178767, exon 1 of 13)	137.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	192.21	272.32	87.87	228.05	219.73	175.23	276.72	386.9	180.49
Merged-chr1-64191749-3	chr1	64191279	64192279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70390.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	86.95	79.25	73.07	81.64	66.24	73.14	49.64	76.49	60.58
Merged-chr6-120567678-3	chr6	120567172	120568172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12876.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	47.48	39.63	32.37	45.21	38.25	40.19	48.58	37.58	39.35
Merged-chr14-8099943-3	chr14	8099447	8100447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	1736.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	106.97	90.31	46.25	144.39	116.16	77.16	106.67	86.22	58.08
Merged-chr7-30423176-3	chr7	30422668	30423668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	-107.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	278.02	325.31	162.79	244.92	258.91	200.14	245.04	260.88	143.64
Merged-chr5-9100632-3	chr5	9100128	9101128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081029)	promoter-TSS (NM_001081029)	-109.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	193.35	145.15	158.17	182.17	112.43	119.76	167.93	109.66	98.05
Merged-chr15-5495309-3	chr15	5494807	5495807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	46.34	58.98	52.72	69.5	60.65	65.11	67.6	48.2	39.35
Merged-chr6-17635165-3	chr6	17634661	17635661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1849.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	176.76	193.07	75.85	170.7	105.43	102.08	148.92	184.38	108.04
Merged-chr5-124015975-3	chr5	124015490	124016490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	16270.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	191.64	95.84	63.82	141.02	60.18	64.3	183.78	135.3	63.7
Merged-chrX-163251823-3	chrX	163251311	163252311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	100753.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	30.32	17.51	10.17	20.24	15.86	16.08	26.4	17.69	7.49
Merged-chr16-19768286-1	chr16	19767786	19768786	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159408, intron 4 of 4)	intron (NM_001159408, intron 4 of 4)	8052.0	NM_001159407	108105.0	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	4.0	0.92	5.55	0.67	3.73	1.61	1.06	6.19	0.0
Merged-chr8-79161603-3	chr8	79161077	79162077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	ORR1D2|LTR|ERVL-MaLR	87006.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	17.16	14.28	11.1	19.57	16.79	14.47	24.29	12.82	8.12
Merged-chr7-104401307-3	chr7	104400815	104401815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42669.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	92.1	82.48	72.15	78.27	57.85	113.33	87.66	110.1	94.93
Merged-chr9-60688069-3	chr9	60687570	60688570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145616)	promoter-TSS (NM_145616)	64.0	NM_001146046	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	16.02	27.19	20.35	24.96	17.73	36.17	16.9	19.01	20.61
Merged-chr16-57211283-3	chr16	57210804	57211804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 4 of 17)	(TC)n|Simple_repeat|Simple_repeat	-9833.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	73.22	61.28	38.85	86.36	45.72	61.09	47.53	67.21	37.47
Merged-chr19-5731789-3	chr19	5731259	5732259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020491)	promoter-TSS (NM_020491)	-27.0	NM_020491	56390.0	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren syndrome/scleroderma autoantigen 1	protein-coding	42.33	44.24	44.4	39.81	24.72	45.82	32.74	42.01	26.85
Merged-chr4-117121236-3	chr4	117120725	117121725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024078, exon 6 of 7)	non-coding (NR_024078, exon 6 of 7)	4500.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	108.69	82.02	105.44	282.71	295.3	217.83	126.74	131.32	64.33
Merged-chr14-102922709-3	chr14	102922220	102923220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59912.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	149.31	197.68	110.99	125.5	104.96	114.14	153.15	175.1	107.42
Merged-chr19-37503214-3	chr19	37502732	37503732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37978.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	73.79	49.76	28.67	49.93	22.86	24.11	60.2	39.8	26.85
Merged-chr2-166786780-3	chr2	166786294	166787294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6973.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	22.88	11.98	8.32	32.39	24.26	12.86	21.12	20.34	9.99
Merged-chr6-57535654-3	chr6	57535156	57536156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-230.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	120.13	176.02	105.44	105.26	125.96	121.37	144.7	181.29	100.55
Merged-chr6-3463176-3	chr6	3462668	3463668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 9 of 9)	intron (NM_178899, intron 9 of 9)	31330.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	9.15	14.75	3.7	19.57	19.59	18.49	11.62	10.17	18.74
Merged-chr12-79613862-4	chr12	79613303	79614303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	310930.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	58.92	80.64	55.5	82.32	52.72	68.32	87.66	80.03	40.59
Merged-chr9-120492617-3	chr9	120492116	120493116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	10.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	167.61	161.74	101.74	209.84	240.72	192.91	166.88	137.96	70.57
Merged-chr4-138262334-3	chr4	138261809	138262809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190978)	promoter-TSS (NM_001190978)	58.0	NM_010623	16559.0	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	17.73	8.75	8.32	22.94	10.73	12.86	16.9	11.05	8.74
Merged-chr8-80338114-3	chr8	80337601	80338601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-155944.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	18.31	18.43	14.8	12.82	13.53	36.97	13.73	11.94	15.61
Merged-chr17-34981984-3	chr17	34981479	34982479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030597)	promoter-TSS (NM_030597)	125.0	NM_001204274	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	370.12	311.95	221.99	377.84	292.03	264.45	303.13	335.16	164.25
Merged-chr5-148551952-3	chr5	148551485	148552485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359201)	promoter-TSS (NM_001359201)	-100.0	NM_001359200	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	334.08	387.52	236.79	261.79	291.57	268.47	290.45	401.93	215.46
Merged-chr6-134072581-3	chr6	134072087	134073087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	36887.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	199.07	217.95	152.62	191.62	192.2	155.13	162.65	185.71	89.93
Merged-chr1-134196547-3	chr1	134196062	134197062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357515, intron 3 of 10)	intron (NM_001357515, intron 3 of 10)	3114.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	69.22	79.72	78.62	69.5	60.18	60.28	90.83	87.11	49.34
Merged-chr3-115729369-3	chr3	115728877	115729877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14322.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	18.31	14.28	0.0	34.41	17.73	2.41	14.79	11.05	6.25
Merged-chr11-89985408-3	chr11	89984904	89985904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316372, intron 4 of 4)	intron (NM_001316372, intron 4 of 4)	17490.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	17.73	12.9	13.87	24.29	34.06	24.92	8.45	11.05	18.74
Merged-chr1-178318777-4	chr1	178318191	178319191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-462.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	597.22	544.19	339.46	611.97	551.88	405.91	484.79	520.43	282.29
Merged-chr4-132215018-3	chr4	132214526	132215526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2770.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	34.32	41.47	51.8	37.78	32.19	38.58	30.63	37.14	43.72
Merged-chr11-103051481-2	chr11	103050980	103051980	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 3 of 11)	intron (NM_008707, intron 3 of 11)	22937.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	2.29	2.3	0.0	84.34	63.91	56.27	63.37	40.24	24.36
Merged-chr10-111390109-3	chr10	111389611	111390611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83116.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	10.3	7.83	5.55	23.62	11.66	8.04	10.56	9.73	8.74
Merged-chr16-42897319-3	chr16	42896817	42897817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040402, intron 1 of 3)	intron (NR_040402, intron 1 of 3)	-10328.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	18.31	30.41	24.05	35.76	28.46	27.33	43.3	29.18	30.6
Merged-chr13-112130407-2	chr13	112129890	112130890	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	-158061.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.0	1.84	0.0	19.57	32.66	25.72	19.01	11.5	18.11
Merged-chr3-95651947-3	chr3	95651378	95652378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6843.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	398.72	405.49	254.36	389.31	338.22	297.4	337.98	438.63	274.17
Merged-chr14-13961177-3	chr14	13960644	13961644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359900, intron 1 of 8)	CpG	169.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	93.24	63.13	95.27	96.48	50.38	50.64	100.34	58.81	34.97
Merged-chr17-45767191-3	chr17	45766692	45767692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32686.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	36.61	22.12	14.8	48.58	49.92	46.62	40.14	11.05	8.74
Merged-chr19-17394027-3	chr19	17393535	17394535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-8.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	114.41	103.68	89.72	114.03	124.09	69.93	76.05	66.33	39.97
Merged-chr19-3929640-3	chr19	3929139	3930139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026316)	promoter-TSS (NM_026316)	77.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	160.75	159.43	188.69	184.87	145.55	183.26	195.39	176.42	158.63
Merged-chr8-76899189-3	chr8	76898666	76899666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	1455.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	102.4	94.0	33.3	170.03	136.69	89.22	111.96	84.45	62.45
Merged-chr5-65537775-3	chr5	65537262	65538262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310618, intron 1 of 4)	CpG	517.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	418.17	398.58	295.06	376.49	298.57	275.7	322.14	318.36	226.08
Merged-chr5-103732777-3	chr5	103732226	103733226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21436.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	65.21	41.01	33.3	36.43	17.73	14.47	50.7	25.65	28.1
Merged-chr16-91073696-3	chr16	91073194	91074194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4549.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	8.58	1.38	1.85	10.12	2.8	2.41	7.39	4.86	3.12
Merged-chr12-111444281-3	chr12	111443762	111444762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009396, intron 1 of 11)	intron (NM_009396, intron 1 of 11)	1601.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	187.63	143.3	95.27	260.44	180.54	167.99	253.48	264.42	96.8
Merged-chr6-50255058-3	chr6	50254542	50255542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018769, intron 1 of 9)	intron (NM_018769, intron 1 of 9)	6727.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	62.35	64.97	65.67	82.32	66.24	64.3	42.25	42.45	44.97
Merged-chr5-123377458-6	chr5	123376990	123377990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17308.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	287.74	317.48	184.99	246.95	229.99	188.09	298.9	439.51	184.86
Merged-chr9-106822771-4	chr9	106822188	106823188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015507, intron 1 of 22)	intron (NM_001015507, intron 1 of 22)	712.0	NM_001015507	321006.0	Mm.440089	NM_001015507	ENSMUSG00000040325	Dcaf1	AI447437|B930007L02Rik|Vprbp|mKIAA0800	DDB1 and CUL4 associated factor 1	protein-coding	262.57	324.39	212.74	199.04	200.6	159.15	211.24	256.9	172.37
Merged-chr9-66126659-3	chr9	66126176	66127176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026635)	promoter-TSS (NM_026635)	65.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	113.84	121.19	97.12	92.44	80.71	104.49	141.53	143.26	85.56
Merged-chr17-46283036-3	chr17	46282524	46283524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252473)	promoter-TSS (NM_001252473)	2.0	NM_001252475	74094.0	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	122.42	63.13	31.45	85.69	48.98	28.13	106.67	48.2	25.61
Merged-chr14-63129180-3	chr14	63128686	63129686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	6724.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	294.04	241.91	153.54	317.12	219.73	155.13	249.26	336.93	160.5
Merged-chr15-38300889-3	chr15	38300392	38301392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289471)	promoter-TSS (NM_001289471)	-181.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	200.79	217.95	195.17	209.84	209.0	208.98	214.41	280.78	181.74
Merged-chr1-136559014-3	chr1	136558523	136559523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65878.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	50.91	44.24	24.97	29.01	20.06	12.86	61.26	75.61	37.47
Merged-chr13-37959457-3	chr13	37958968	37959968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34740.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	306.62	271.4	163.72	287.43	229.99	228.28	199.62	232.58	129.28
Merged-chr8-84203645-3	chr8	84203153	84204153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4865.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	381.56	324.85	262.69	380.54	323.76	274.9	292.56	340.47	164.25
Merged-chr3-97206671-3	chr3	97206152	97207152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029933, intron 9 of 9)	intron (NM_029933, intron 9 of 9)	20712.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	44.62	55.75	54.57	44.53	26.12	28.13	54.92	49.96	36.22
Merged-chr11-69997327-3	chr11	69996831	69997831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291127)	promoter-TSS (NM_001291127)	-131.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	170.47	105.06	163.72	118.75	69.98	115.75	157.37	122.48	130.53
Merged-chr15-85634633-3	chr15	85634145	85635145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-52824.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	118.99	163.58	133.19	145.06	131.56	139.86	190.11	198.53	99.92
Merged-chr13-64180406-3	chr13	64179912	64180912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 5 of 7)	C-rich|Low_complexity|Low_complexity	18546.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	2.29	3.69	0.0	3.37	2.8	9.65	5.28	3.54	7.49
Merged-chr13-55405625-3	chr13	55405106	55406106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011392, intron 8 of 12)	intron (NM_011392, intron 8 of 12)	5958.0	NM_011392	20505.0	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	11.44	4.61	3.7	15.52	1.87	4.02	5.28	3.1	1.87
Merged-chr2-167634605-3	chr2	167634130	167635130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2625.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	180.77	212.88	121.17	174.08	190.34	159.15	170.05	290.5	96.18
Merged-chr16-94969159-1	chr16	94968659	94969659	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	28537.0	NM_001025584	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.0	1.38	0.0	5.4	2.33	4.02	3.17	0.44	5.0
Merged-chr12-85670293-3	chr12	85669796	85670796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16424.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	38.33	18.89	18.5	34.41	17.26	16.08	27.46	32.72	17.49
Merged-chr7-81835604-3	chr7	81835107	81836107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6176.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	81.23	76.03	57.35	66.8	54.58	77.97	65.48	62.35	54.33
Merged-chr7-141269069-3	chr7	141268594	141269594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028069)	TTS (NM_028069)	-2670.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	220.81	169.57	200.71	167.33	139.95	204.16	215.46	267.95	161.75
Merged-chr17-64600888-5	chr17	64600386	64601386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008549)	promoter-TSS (NM_008549)	-763.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	259.71	220.25	230.31	232.78	188.94	181.66	207.01	223.74	121.78
Merged-chr10-95564215-3	chr10	95563725	95564725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027722)	promoter-TSS (NM_027722)	-79.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	127.0	71.42	104.52	107.28	56.91	74.75	115.12	44.22	49.34
Merged-chr13-36074750-3	chr13	36074249	36075249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201358, intron 2 of 2)	MTD|LTR|ERVL-MaLR	42608.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	2.29	2.76	5.55	8.77	6.53	1.61	2.11	2.21	0.0
Merged-chr6-146686967-3	chr6	146686476	146687476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29758.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	12.59	4.61	2.77	14.17	7.93	6.43	11.62	10.17	5.0
Merged-chr7-48882503-3	chr7	48882053	48883053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-957.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	9.72	6.45	6.47	8.1	6.53	1.61	8.45	10.61	2.5
Merged-chr7-120835905-2	chr7	120835406	120836406	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6925.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	46.91	39.17	91.57	44.53	38.72	51.44	68.65	62.79	41.84
Merged-chr18-34954399-2	chr18	34953912	34954912	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-61.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	483.96	385.22	234.01	379.87	376.47	229.88	381.28	400.16	141.77
Merged-chr11-53891852-3	chr11	53891342	53892342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	-139.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	137.86	117.5	121.17	130.22	117.09	154.33	126.74	128.67	92.43
Merged-chr1-88287794-3	chr1	88287297	88288297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10218.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	13.16	15.67	1.85	11.47	11.2	13.66	12.67	8.84	23.11
Merged-chr4-19838396-1	chr4	19837896	19838896	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028746, intron 2 of 3)	RMER19C|LTR|ERVK	19669.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	10.87	6.91	1.85	12.82	20.06	14.47	6.34	6.19	2.5
Merged-chr11-75051957-3	chr11	75051428	75052428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	14063.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	114.41	97.69	82.32	95.81	68.58	113.33	99.28	107.45	25.61
Merged-chr11-53926500-3	chr11	53925994	53926994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34791.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	8.58	8.29	9.25	12.82	7.46	16.08	5.28	3.54	5.0
Merged-chr2-131211023-3	chr2	131210519	131211519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110992, intron 1 of 1)	intron (NR_110992, intron 1 of 1)	659.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	387.85	376.92	213.66	382.56	353.61	277.31	403.46	527.06	196.73
Merged-chr7-142095357-3	chr7	142094864	142095864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008748)	promoter-TSS (NM_008748)	-80.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	147.02	58.52	27.75	172.73	69.04	50.64	84.49	30.95	15.61
Merged-chr11-49712800-3	chr11	49712292	49713292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-70.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	108.69	64.05	79.55	78.94	51.78	49.03	115.12	38.47	44.34
Merged-chr11-3139508-2	chr11	3139009	3140009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15488.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	25.17	58.98	61.97	51.95	77.91	109.32	1.06	2.65	124.28
Merged-chr7-89338749-3	chr7	89338252	89339252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360745)	promoter-TSS (NM_001360745)	35.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	280.88	258.04	236.79	281.36	249.12	230.69	345.37	332.95	153.63
Merged-chr12-83520416-3	chr12	83519929	83520929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030246)	promoter-TSS (NM_030246)	-37.0	NM_030246	73828.0	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	16.59	13.82	5.55	20.92	12.6	24.11	14.79	14.15	5.0
Merged-chr11-4195774-3	chr11	4195215	4196215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8882.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	255.71	217.95	100.82	310.37	225.79	115.75	139.42	177.75	56.83
Merged-chr18-44828911-3	chr18	44828410	44829410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163013, exon 1 of 30)	exon (NM_001163013, exon 1 of 30)	245.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	391.28	314.25	226.61	284.06	274.31	212.2	250.32	207.82	160.5
Merged-chr14-77904385-3	chr14	77903882	77904882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178825, exon 1 of 7)	5' UTR (NM_178825, exon 1 of 7)	143.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	171.62	264.49	154.47	178.13	202.0	126.19	251.37	386.9	162.38
Merged-chr7-58844266-3	chr7	58843771	58844771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186069.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	8.58	3.69	7.4	12.14	6.53	8.04	3.17	8.4	1.87
Merged-chr3-88627736-3	chr3	88627243	88628243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	6349.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	34.9	28.11	49.95	44.53	18.19	49.03	34.85	36.26	33.1
Merged-chr4-128706752-3	chr4	128706244	128707244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18006.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	45.76	32.25	34.22	59.38	27.52	51.44	31.69	38.03	32.48
Merged-chr2-122630640-3	chr2	122630144	122631144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033256)	promoter-TSS (NM_001033256)	19.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	114.41	88.93	74.92	142.37	114.76	86.01	146.81	118.94	70.57
Merged-chr12-112633158-3	chr12	112632665	112633665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-11663.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	139.01	141.0	154.47	193.64	150.22	204.16	199.62	183.5	117.41
Merged-chr9-45095732-2	chr9	45095242	45096242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16559.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	135.58	133.63	110.07	146.41	125.02	147.09	3.17	8.4	8.12
Merged-chr16-33985545-3	chr16	33985044	33986044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 56 of 59)	intron (NM_177357, intron 56 of 59)	-18506.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	7.44	10.6	3.7	12.82	0.93	9.65	8.45	8.4	6.25
Merged-chr12-32379550-3	chr12	32379055	32380055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	766.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	183.63	186.16	188.69	174.08	146.95	160.76	182.72	167.58	136.15
Merged-chr10-69185541-3	chr10	69185020	69186020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23032.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	88.67	118.42	91.57	92.44	93.3	90.02	84.49	126.9	101.8
Merged-chr17-74717691-3	chr17	74717205	74718205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152817)	promoter-TSS (NM_152817)	-45.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	23.45	17.51	24.05	22.27	33.12	22.51	65.48	72.96	30.6
Merged-chr12-108275565-3	chr12	108275067	108276067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-150.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	12.59	11.06	5.55	4.05	5.13	2.41	4.22	0.44	1.87
Merged-chr6-145250353-3	chr6	145249839	145250839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021284)	promoter-TSS (NM_021284)	-108.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	183.06	78.79	103.59	216.58	66.71	90.02	142.59	43.33	59.33
Merged-chr3-103802386-3	chr3	103801869	103802869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-760.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	193.93	223.02	146.14	160.58	119.43	152.72	140.47	199.86	103.05
Merged-chr10-25366909-3	chr10	25366408	25367408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	7110.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	100.11	99.99	59.2	103.91	78.84	81.99	92.94	99.49	34.35
Merged-chr7-110121817-3	chr7	110121323	110122323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355058)	promoter-TSS (NM_001355058)	-236.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	93.24	88.47	68.45	122.12	100.77	72.34	128.85	144.59	59.33
Merged-chr10-63122773-3	chr10	63122286	63123286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 16 of 19)	intron (NM_182992, intron 16 of 19)	22630.0	NM_016864	53404.0	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	13.16	18.89	2.77	13.49	12.6	6.43	14.79	11.05	5.0
Merged-chr7-35742433-2	chr7	35741933	35742933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	12021.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	85.81	81.1	68.45	80.97	60.65	73.14	4.22	1.33	2.5
Merged-chr10-93488629-3	chr10	93488130	93489130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010401)	promoter-TSS (NM_010401)	-138.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	29.75	35.48	33.3	60.05	52.72	53.05	10.56	6.19	8.74
Merged-chr8-78908082-1	chr8	78907582	78908582	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-86930.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	8.58	1.84	1.85	4.05	3.73	1.61	1.06	2.65	0.0
Merged-chr17-80172912-3	chr17	80172402	80173402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	34403.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	33.18	29.03	24.05	47.23	41.99	53.85	38.02	32.28	16.24
Merged-chr16-4375173-1	chr16	4374673	4375673	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	45325.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	13.16	14.75	11.1	14.84	16.79	31.35	8.45	9.29	3.75
Merged-chr13-12370120-3	chr13	12369650	12370650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25225.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	20.59	17.05	3.7	43.18	43.85	16.88	22.18	30.95	9.99
Merged-chr9-110459328-3	chr9	110458809	110459809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 1 of 9)	MER58B|DNA|hAT-Charlie	17385.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	116.13	152.98	127.64	102.56	91.44	107.71	99.28	98.6	87.43
Merged-chr15-77929035-3	chr15	77928515	77929515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	-21.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	91.53	76.03	85.1	72.19	65.78	79.58	101.39	83.13	98.68
Merged-chr10-81291739-3	chr10	81291233	81292233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282095)	promoter-TSS (NM_001282095)	-152.0	NM_001282095	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	41.19	32.25	27.75	42.51	34.06	28.13	32.74	34.49	24.98
Merged-chrX-10714414-1	chrX	10713914	10714914	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2951.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	32.04	30.41	31.45	24.96	26.12	61.09	50.7	55.27	23.73
Merged-chr1-72711281-3	chr1	72710773	72711773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009084)	promoter-TSS (NM_009084)	13.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	110.41	147.45	100.82	129.55	148.35	127.0	122.52	158.3	104.92
Merged-chr4-117545758-3	chr4	117545265	117546265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4559.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	75.51	76.95	68.45	119.43	90.5	91.63	84.49	99.49	57.46
Merged-chr10-80577636-5	chr10	80577157	80578157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_078477)	promoter-TSS (NM_078477)	-361.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	90.96	64.05	135.04	111.33	62.05	110.12	77.1	84.01	48.71
Merged-chr5-142448233-3	chr5	142447740	142448740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	intron (NM_199068, intron 2 of 8)	-15691.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	5.15	6.91	3.7	14.17	6.53	15.27	3.17	4.86	3.75
Merged-chr9-56104470-3	chr9	56103967	56104967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	14491.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	40.04	37.78	44.4	47.23	42.92	54.66	63.37	49.08	53.08
Merged-chr12-55443331-3	chr12	55442815	55443815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44490.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	16.59	11.52	7.4	20.92	9.33	7.23	14.79	13.27	8.12
Merged-chr1-134094025-3	chr1	134093524	134094524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14869.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	454.21	358.49	315.41	387.96	278.51	289.36	327.42	432.88	241.07
Merged-chrY-42512505-1	chrY	42512005	42513005	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-417818.0	NR_038299	100041346.0	Mm.426191	NR_038299	ENSMUSG00000101005	Gm20871	-	Sycp3 like Y-linked pseudogene	pseudo	4.0	0.92	1.85	15.52	3.73	12.86	0.0	0.0	0.0
Merged-chr1-190928569-3	chr1	190928054	190929054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	49.0	NM_021421	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	226.53	205.97	149.84	280.01	295.3	229.08	304.18	261.76	108.67
Merged-chr1-131095791-3	chr1	131095290	131096290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	2053.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	192.78	179.25	104.52	138.99	118.49	142.27	238.7	193.23	119.28
Merged-chr17-26506211-3	chr17	26505721	26506721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013642, exon 4 of 4)	3' UTR (NM_013642, exon 4 of 4)	2251.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	247.7	209.2	152.62	255.04	182.4	154.33	181.66	172.89	131.15
Merged-chr15-79323619-3	chr15	79323127	79324127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	4744.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	66.36	54.83	37.92	69.5	48.52	40.19	57.03	70.3	49.34
Merged-chr16-78576103-3	chr16	78575599	78576599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252440, intron 1 of 4)	intron (NM_001252440, intron 1 of 4)	589.0	NM_001252438	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	156.74	134.55	117.47	128.87	127.82	87.61	170.05	160.95	103.67
Merged-chr10-119240543-2	chr10	119240051	119241051	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027994)	promoter-TSS (NM_027994)	-496.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	88.1	68.2	66.6	96.48	76.04	61.89	115.12	72.96	54.33
Merged-chr4-3706789-3	chr4	3706294	3707294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-8170.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	64.64	48.84	48.1	68.15	43.39	76.36	44.36	53.5	48.71
Merged-chr14-67869356-3	chr14	67868873	67869873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-9628.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	81.8	64.51	54.57	76.92	60.65	52.25	47.53	46.87	38.72
Merged-chr7-64287592-3	chr7	64287091	64288091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-79.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	205.94	214.26	155.39	213.89	233.72	151.92	196.45	150.34	111.17
Merged-chr9-47744056-3	chr9	47743615	47744615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	74093.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	237.4	210.58	135.04	211.86	209.46	134.23	156.32	182.62	69.32
Merged-chr11-120467597-3	chr11	120467094	120468094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008244)	promoter-TSS (NM_008244)	6.0	NM_197995	70317.0	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	66.93	67.74	61.97	82.99	69.51	81.18	44.36	57.92	47.46
Merged-chr3-37332358-3	chr3	37331868	37332868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16285.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	12.01	10.6	7.4	38.46	27.06	12.86	25.35	17.69	14.36
Merged-chr4-123425813-3	chr4	123425303	123426303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-13892.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	25.17	24.42	20.35	30.36	22.39	42.6	53.87	52.62	35.6
Merged-chr17-65884981-3	chr17	65884473	65885473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198949)	promoter-TSS (NM_001198949)	-50.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	128.14	127.18	100.82	119.43	120.83	88.42	108.79	106.12	73.07
Merged-chr16-32202840-3	chr16	32202335	32203335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23035.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	92.67	68.66	56.42	80.97	43.39	59.48	61.26	58.37	35.6
Merged-chr11-54954292-3	chr11	54953794	54954794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271456, intron 1 of 18)	intron (NM_001271456, intron 1 of 18)	8646.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	16.59	17.51	8.32	22.94	12.6	16.08	20.07	11.05	12.49
Merged-chr1-191280886-3	chr1	191280406	191281406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37212.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	229.97	153.9	73.07	255.04	181.94	120.57	82.38	89.76	48.71
Merged-chr9-45084680-2	chr9	45084184	45085184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 3 of 10)	intron (NM_001005421, intron 3 of 10)	5501.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	34.32	26.73	21.27	21.59	21.93	40.19	6.34	2.21	5.62
Merged-chr7-35056130-1	chr7	35055630	35056630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	CpG	436.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	328.36	253.89	232.16	296.2	209.0	198.54	325.31	255.13	185.48
Merged-chr1-80402145-3	chr1	80401628	80402628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43804.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	6.86	3.23	0.0	6.75	7.0	4.82	5.28	7.52	2.5
Merged-chr18-56756297-3	chr18	56755836	56756836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48523.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	180.2	212.88	124.87	172.73	199.2	135.84	182.72	197.65	109.29
Merged-chr7-110062071-1	chr7	110061571	110062571	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009281, intron 1 of 15)	CpG	369.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	270.01	279.24	206.26	213.89	253.78	191.3	224.97	242.31	161.13
Merged-chr15-95797370-3	chr15	95796874	95797874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6531.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	98.39	88.01	70.3	105.93	58.31	117.35	88.72	65.44	84.31
Merged-chr2-91710458-3	chr2	91709960	91710960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178724)	promoter-TSS (NM_178724)	132.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	261.43	300.89	214.59	299.57	326.56	196.93	296.79	336.49	139.89
Merged-chr1-23922416-3	chr1	23921925	23922925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028534)	promoter-TSS (NM_028534)	-44.0	NM_028534	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	112.69	80.18	80.47	112.0	62.98	91.63	145.75	107.0	64.33
Merged-chr17-83276434-5	chr17	83275927	83276927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	61144.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	383.28	320.71	229.39	391.34	360.14	319.1	318.97	380.26	166.75
Merged-chr11-96862108-3	chr11	96861599	96862599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019877)	TTS (NM_019877)	11706.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	7.44	9.68	1.85	12.82	4.67	9.65	5.28	2.21	4.37
Merged-chr4-33290300-3	chr4	33289780	33290780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20031.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	68.07	84.78	62.9	33.74	35.45	48.23	58.09	62.35	51.84
Merged-chr9-66511848-3	chr9	66511341	66512341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2752.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	292.89	300.43	258.06	350.18	417.53	241.14	286.23	409.0	148.01
Merged-chr10-76442858-3	chr10	76442370	76443370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282992)	promoter-TSS (NM_001282992)	42.0	NM_008787	18541.0	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	157.31	189.38	146.14	129.55	161.88	106.9	144.7	147.68	68.07
Merged-chr13-9873616-3	chr13	9873130	9874130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108309.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	106.97	88.01	70.3	123.47	84.9	91.63	133.08	88.88	79.32
Merged-chr3-14611356-3	chr3	14610850	14611850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347206)	promoter-TSS (NM_001347206)	-94.0	NM_001099674	69126.0	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	212.8	193.99	122.09	221.31	176.34	131.02	217.57	214.45	94.93
Merged-chr8-111145680-3	chr8	111145180	111146180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040363)	promoter-TSS (NR_040363)	-182.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	143.01	87.55	107.29	141.02	115.23	111.73	136.25	83.57	69.95
Merged-chr11-109611772-3	chr11	109611265	109612265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145940)	promoter-TSS (NM_145940)	-376.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	61.78	35.94	61.05	54.65	28.46	51.44	69.71	53.06	34.35
Merged-chr15-81694138-3	chr15	81693655	81694655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164320, exon 3 of 6)	exon (NM_001164320, exon 3 of 6)	3132.0	NM_001164320	214685.0	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	10.87	7.37	12.02	14.84	10.26	8.04	13.73	6.19	3.75
Merged-chr4-34526911-3	chr4	34526405	34527405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23710.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	19.45	19.35	14.8	37.78	23.79	38.58	28.52	26.09	31.85
Merged-chr2-163662872-3	chr2	163662366	163663366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	B3|SINE|B2	4408.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	56.06	74.65	59.2	82.32	55.51	50.64	92.94	88.43	61.2
Merged-chr2-66125139-3	chr2	66124654	66125654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015736)	promoter-TSS (NM_015736)	-361.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	50.91	28.57	54.57	61.4	41.99	35.37	43.3	35.37	17.49
Merged-chr16-65450871-3	chr16	65450363	65451363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69766.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	40.04	37.78	33.3	35.09	41.05	40.19	50.7	51.73	27.48
Merged-chr8-72169407-3	chr8	72168903	72169903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023126, intron 2 of 7)	intron (NM_023126, intron 2 of 7)	8203.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	131.57	101.83	73.07	74.22	53.18	62.7	99.28	93.3	51.84
Merged-chr11-22512612-3	chr11	22512056	22513056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153596, exon 1 of 4)	exon (NM_153596, exon 1 of 4)	273.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	90.38	82.48	86.95	129.55	111.96	100.47	102.45	98.16	69.95
Merged-chr9-5298616-3	chr9	5298127	5299127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009807, exon 1 of 10)	5' UTR (NM_009807, exon 1 of 10)	110.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	205.94	251.13	89.72	168.0	183.8	165.58	172.16	201.63	111.17
Merged-chr19-44363626-3	chr19	44363119	44364119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30293.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	32.04	15.21	12.02	15.52	12.6	24.11	31.69	31.39	10.62
Merged-chr4-134930838-3	chr4	134930333	134931333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-147.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	306.05	242.83	173.89	237.5	213.19	214.61	234.47	231.7	143.02
Merged-chr12-21369178-3	chr12	21368663	21369663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	(CAGA)n|Simple_repeat|Simple_repeat	4469.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	98.39	111.05	91.57	103.91	81.17	112.53	329.53	391.76	182.36
Merged-chr3-88058405-3	chr3	88057904	88058904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144897)	promoter-TSS (NM_144897)	91.0	NM_144897	246703.0	Mm.205996	NM_144897	ENSMUSG00000028070	Naxe	AA087124|AI-BP|AIBP|Apoa1bp|Apoa1ip|ESTM37	NAD(P)HX epimerase	protein-coding	20.59	18.43	25.9	30.36	28.46	42.6	34.85	27.86	17.49
Merged-chr5-99381790-3	chr5	99381281	99382281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-128854.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	232.25	240.07	89.72	234.13	278.97	163.17	216.52	301.12	118.04
Merged-chr4-43044888-3	chr4	43044394	43045394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1326.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	153.31	145.15	122.09	109.98	87.24	113.33	134.14	156.97	94.3
Merged-chr2-130274355-3	chr2	130273846	130274846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024193)	promoter-TSS (NM_024193)	-66.0	NM_024193	67134.0	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	182.49	177.4	137.82	165.31	249.58	170.4	175.33	166.7	93.05
Merged-chr16-23984406-3	chr16	23983890	23984890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3107.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	61.78	41.47	48.1	70.85	42.45	44.21	46.47	26.53	34.35
Merged-chr7-45054330-3	chr7	45053810	45054810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022999, intron 6 of 6)	intron (NM_022999, intron 6 of 6)	-1429.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	133.29	92.62	86.02	131.57	90.04	126.19	124.63	98.16	89.31
Merged-chr4-94614495-3	chr4	94613993	94614993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290568)	promoter-TSS (NM_001290568)	2.0	NM_026319	67694.0	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	26.89	23.5	16.65	28.34	24.26	28.13	24.29	20.78	18.74
Merged-chr8-9977762-3	chr8	9977266	9978266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026868)	promoter-TSS (NM_026868)	49.0	NM_026868	68904.0	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	113.27	117.5	77.7	142.37	65.78	97.26	174.27	106.12	58.71
Merged-chr6-90713328-3	chr6	90712832	90713832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	3197.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	58.35	88.93	98.97	62.75	64.84	78.77	82.38	69.86	55.58
Merged-chr5-77265995-6	chr5	77265500	77266500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011263, intron 1 of 3)	CpG	506.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	110.41	81.1	136.89	127.52	90.04	148.7	132.02	68.09	69.95
Merged-chr17-42943635-3	chr17	42943126	42944126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67202.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	14.87	15.67	16.65	27.66	9.8	16.88	36.97	16.8	26.23
Merged-chr8-111933790-3	chr8	111933292	111934292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033321)	promoter-TSS (NM_001033321)	21.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	4.58	1.84	3.7	3.37	4.2	2.41	4.22	3.1	3.75
Merged-chr7-96546132-3	chr7	96545639	96546639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204175.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	47.48	72.8	49.95	39.81	39.19	28.94	11.62	9.29	1.25
Merged-chr1-88267278-3	chr1	88266786	88267786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	2122.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	17.73	25.34	25.9	19.57	24.26	23.31	48.58	33.16	47.46
Merged-chr1-91034328-3	chr1	91033834	91034834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	PB1D9|SINE|Alu	-19110.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	190.49	164.04	134.12	160.58	113.36	137.45	130.97	129.11	74.94
Merged-chr10-75635838-3	chr10	75635339	75636339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162913)	TTS (NM_001162913)	8169.0	NM_001162913	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	5.72	2.76	7.4	6.75	3.73	0.0	0.0	1.77	3.75
Merged-chr2-18064562-3	chr2	18064057	18065057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-28.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	560.61	474.61	418.08	483.1	388.6	267.66	395.01	352.85	259.8
Merged-chr12-98674880-4	chr12	98674372	98675372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46730.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	12.59	13.36	16.65	12.82	13.06	19.29	12.67	12.38	8.12
Merged-chr11-110430804-3	chr11	110430313	110431313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	31711.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	79.52	73.73	28.67	62.07	47.58	26.53	119.35	113.64	55.58
Merged-chr2-10591329-3	chr2	10590845	10591845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001198808, exon 23 of 23)	3' UTR (NM_001198808, exon 23 of 23)	73190.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	46.91	32.25	31.45	62.75	50.38	28.94	51.75	35.37	36.22
Merged-chr6-136804418-3	chr6	136803929	136804929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	2.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	388.42	448.8	372.76	410.9	466.97	356.08	195.39	240.54	146.14
Merged-chr13-17944260-3	chr13	17943763	17944763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019491)	promoter-TSS (NM_019491)	-46.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	185.35	116.12	169.27	197.02	114.29	140.66	208.07	94.62	87.43
Merged-chr11-70442094-3	chr11	70441580	70442580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3825.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	145.87	90.77	92.5	143.04	59.71	86.81	105.62	95.95	98.68
Merged-chr4-83328221-3	chr4	83327732	83328732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4043.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	26.31	29.95	17.57	10.12	13.53	28.94	45.42	40.68	30.6
Merged-chr5-136136123-3	chr5	136135652	136136652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	7.0	NM_001359417	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	65.21	67.27	47.17	76.92	73.24	71.54	49.64	68.54	35.6
Merged-chr18-70622554-3	chr18	70622056	70623056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	54264.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	69.22	93.54	45.32	53.3	60.65	56.27	76.05	71.63	58.08
Merged-chr4-134854343-1	chr4	134853843	134854843	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-998.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	134.43	87.55	94.35	120.77	97.03	82.79	97.17	104.79	53.08
Merged-chr12-95292815-1	chr12	95292315	95293315	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-399411.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	6.86	8.29	3.7	9.45	11.2	6.43	3.17	5.31	2.5
Merged-chr4-24496360-3	chr4	24495863	24496863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199467)	promoter-TSS (NM_199467)	-88.0	NR_149739	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	50.34	41.93	40.7	47.9	39.65	57.87	46.47	33.16	26.85
Merged-chr16-31757853-3	chr16	31757355	31758355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	3505.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	44.62	49.3	22.2	33.74	23.33	20.09	32.74	32.72	19.36
Merged-chr7-78783011-3	chr7	78782516	78783516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026498)	promoter-TSS (NM_026498)	73.0	NM_023331	67308.0	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	56.63	71.42	48.1	65.45	76.97	49.83	111.96	102.14	31.23
Merged-chr10-44604923-3	chr10	44604371	44605371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146123.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	64.07	51.61	24.97	63.42	51.32	38.58	77.1	56.16	28.1
Merged-chr17-3156352-3	chr17	3155857	3156857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	41385.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	59.49	41.93	21.27	49.25	44.78	51.44	31.69	38.03	26.85
Merged-chr8-84979367-1	chr8	84978867	84979867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008416)	promoter-TSS (NM_008416)	-619.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	496.54	383.37	269.16	431.82	343.82	300.62	364.38	419.62	211.71
Merged-chr8-94183353-3	chr8	94182851	94183851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4262.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	70.36	55.29	37.92	61.4	77.44	72.34	84.49	73.84	36.85
Merged-chr6-113238666-3	chr6	113238168	113239168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362185, intron 1 of 16)	intron (NM_001362185, intron 1 of 16)	825.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	165.9	112.43	105.44	127.52	98.9	78.77	127.8	106.12	53.71
Merged-chr5-124014983-3	chr5	124014469	124015469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17291.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	254.56	255.27	147.07	253.69	225.32	179.24	227.08	309.96	111.79
Merged-chr11-72608485-3	chr11	72607995	72608995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	CpG	1234.0	NM_025985	67128.0	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	133.86	135.01	167.42	121.45	93.3	161.56	156.32	94.62	84.94
Merged-chr3-96301349-2	chr3	96300852	96301852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7383.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	251.13	211.5	147.07	255.04	198.73	163.97	252.43	303.33	153.63
Merged-chr17-34121205-5	chr17	34120705	34121705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 1 of 12)	CpG-6274	542.0	NM_010238	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	570.91	567.23	349.63	565.41	540.68	384.21	433.04	537.23	281.04
Merged-chr10-128373481-3	chr10	128372978	128373978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3441.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	156.17	112.89	112.84	133.59	80.71	106.9	103.51	140.17	92.43
Merged-chr6-30509753-3	chr6	30509236	30510236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178625)	promoter-TSS (NM_178625)	37.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	67.5	68.66	66.6	80.29	78.84	87.61	84.49	89.76	39.35
Merged-chr1-184845923-3	chr1	184845407	184846407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133684)	promoter-TSS (NM_133684)	-60.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	109.83	143.3	113.77	140.34	119.43	98.06	118.29	137.07	76.19
Merged-chr19-16323143-3	chr19	16322649	16323649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-8145.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	25.74	28.11	25.9	9.45	11.66	9.65	7.39	15.03	11.87
Merged-chr16-70326793-3	chr16	70326303	70327303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	L1MD2|LINE|L1	12854.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	37.18	33.18	20.35	35.09	17.73	26.53	31.69	66.77	28.73
Merged-chr6-115808628-3	chr6	115808129	115809129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028546)	promoter-TSS (NR_028546)	114.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	220.81	177.4	110.99	198.37	205.73	125.39	201.73	195.0	78.69
Merged-chr5-95918649-1	chr5	95918149	95919149	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38290.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	22.88	27.19	32.37	23.62	21.93	27.33	15.84	13.27	21.86
Merged-chr11-70803069-3	chr11	70802568	70803568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	MLT1D|LTR|ERVL-MaLR	9493.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	163.04	191.69	138.74	178.13	133.42	154.33	173.21	244.52	122.41
Merged-chr11-60699688-3	chr11	60699159	60700159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-31.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	56.63	45.62	30.52	65.45	41.52	86.01	72.88	33.6	27.48
Merged-chr2-155357503-3	chr2	155357024	155358024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004721)	promoter-TSS (NM_001004721)	-100.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	48.05	30.87	42.55	67.47	37.32	50.64	76.05	68.09	19.36
Merged-chr2-18898119-3	chr2	18897622	18898622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-96304.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	94.96	93.08	52.72	84.34	69.98	73.95	91.89	77.38	54.33
Merged-chr8-126497747-3	chr8	126497256	126498256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22691.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	64.64	49.76	22.2	91.09	47.12	77.16	72.88	52.18	35.6
Merged-chr2-90515152-3	chr2	90514644	90515644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-35970.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	54.92	49.3	29.6	64.77	38.72	69.13	77.1	71.19	41.84
Merged-chr14-20731433-3	chr14	20730949	20731949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010811, intron 2 of 14)	intron (NM_010811, intron 2 of 14)	3113.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	117.84	112.89	89.72	83.66	58.78	60.28	123.57	110.98	85.56
Merged-chr13-60673138-3	chr13	60672616	60673616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	70905.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	197.36	201.82	115.62	195.67	140.89	136.64	186.94	208.26	101.17
Merged-chr1-91074805-3	chr1	91074295	91075295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 3 of 22)	intron (NM_008515, intron 3 of 22)	21351.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	109.83	105.06	73.07	103.23	72.31	86.81	94.0	97.72	54.96
Merged-chr13-113508509-3	chr13	113508028	113509028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-5684.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	191.07	136.39	85.1	228.05	116.63	133.43	188.0	181.73	93.68
Merged-chr7-44849085-3	chr7	44848578	44849578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290695)	promoter-TSS (NM_001290695)	1.0	NM_001042655	233204.0	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	217.38	183.85	187.77	215.91	172.61	155.93	251.37	214.01	83.69
Merged-chr5-139781642-2	chr5	139781137	139782137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_026748	68510.0	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	118.42	77.41	27.75	150.46	126.42	67.52	4.22	4.42	4.37
Merged-chr1-79848887-3	chr1	79848369	79849369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009255, intron 1 of 8)	intron (NM_009255, intron 1 of 8)	9796.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	28.03	29.49	5.55	36.43	26.12	12.06	27.46	23.88	6.25
Merged-chr4-135070014-3	chr4	135069510	135070510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50635.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	8.58	5.99	4.62	8.1	6.06	11.25	12.67	3.54	2.5
Merged-chr10-24930368-3	chr10	24929880	24930880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2910.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	21.17	15.67	15.72	43.18	23.33	34.56	50.7	55.71	26.85
Merged-chr9-21092070-3	chr9	21091565	21092565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027911)	promoter-TSS (NM_027911)	-57.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	153.31	162.2	128.57	161.93	142.75	135.04	151.03	167.14	96.18
Merged-chr17-39848517-4	chr17	39848059	39849059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	5562.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	289.46	167.73	239.56	157.21	69.51	122.18	117.24	44.22	155.51
Merged-chr7-100862695-2	chr7	100862205	100863205	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	708.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	177.91	125.33	75.85	126.17	90.97	66.71	125.69	115.85	76.19
Merged-chr5-88981807-3	chr5	88981318	88982318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-46148.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	34.32	30.41	21.27	41.16	26.12	24.11	39.08	30.95	15.61
Merged-chr17-56609874-3	chr17	56609382	56610382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153152)	promoter-TSS (NM_153152)	-111.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	173.33	151.6	112.84	130.9	139.49	132.63	135.19	150.78	79.94
Merged-chr11-50212135-3	chr11	50211628	50212628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1308.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	262.57	271.86	121.17	257.74	228.59	142.27	171.1	207.82	66.2
Merged-chr4-99177157-3	chr4	99176642	99177642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16792.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	106.4	104.14	95.27	82.32	74.64	103.69	129.91	101.7	71.2
Merged-chr11-54787708-3	chr11	54787204	54788204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-1.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	189.92	169.57	110.07	176.78	157.21	139.86	121.46	126.46	103.05
Merged-chr10-94591765-3	chr10	94591257	94592257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172051)	TTS (NM_172051)	-5558.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	11.44	7.37	9.25	8.1	9.33	12.86	14.79	7.96	9.99
Merged-chr18-77938391-3	chr18	77937880	77938880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-87.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	177.91	213.34	170.19	161.26	141.35	138.25	226.02	211.36	124.91
Merged-chr10-17624347-3	chr10	17623858	17624858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98870.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	18.88	20.27	30.52	20.24	16.79	24.11	30.63	25.2	14.99
Merged-chr13-98890997-3	chr13	98890495	98891495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048267)	promoter-TSS (NM_001048267)	47.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	109.83	99.53	107.29	153.84	138.55	116.55	149.98	85.78	70.57
Merged-chr6-134640968-3	chr6	134640456	134641456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026371)	promoter-TSS (NM_026371)	16.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	99.54	58.52	71.22	89.74	80.24	132.63	61.26	41.56	38.1
Merged-chr8-94838385-3	chr8	94837892	94838892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026452)	promoter-TSS (NM_026452)	-25.0	NM_026452	67914.0	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	294.04	276.01	243.26	305.65	332.62	234.71	257.71	292.71	194.23
Merged-chr11-114669108-3	chr11	114668617	114669617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048058, intron 2 of 3)	CpG-2790	336.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	191.64	181.55	158.17	228.73	143.68	134.23	194.34	187.04	135.52
Merged-chr2-84618843-3	chr2	84618361	84619361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 5 of 18)	MIRc|SINE|MIR	30619.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	86.38	97.69	62.9	91.09	64.38	86.81	97.17	126.46	72.45
Merged-chr8-67950436-3	chr8	67949923	67950923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	24151.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	21.74	38.25	37.92	25.64	30.32	36.97	24.29	22.55	15.61
Merged-chr2-30472141-3	chr2	30471628	30472628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030244)	TTS (NM_030244)	2071.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	14.3	14.28	12.95	29.69	17.73	42.6	30.63	15.92	23.11
Merged-chr11-74830833-3	chr11	74830318	74831318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010813)	promoter-TSS (NM_010813)	-106.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	404.44	355.73	272.86	427.1	295.77	252.39	334.81	375.4	195.48
Merged-chrX-164028113-3	chrX	164027615	164028615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181315)	promoter-TSS (NM_181315)	-105.0	NM_181315	56078.0	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	4.0	2.3	7.4	2.7	6.53	0.0	1.06	1.33	0.0
Merged-chr1-86479290-3	chr1	86478795	86479795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47262.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	45.19	44.24	26.82	40.48	38.25	48.23	33.8	24.76	23.11
Merged-chr3-88177683-3	chr3	88177199	88178199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045997)	promoter-TSS (NR_045997)	86.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	485.1	391.67	221.06	497.94	366.68	276.5	422.47	463.39	172.37
Merged-chr2-131478461-3	chr2	131477980	131478980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13382.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	14.87	10.14	8.32	35.09	11.2	8.04	30.63	23.88	8.74
Merged-chr7-102250184-2	chr7	102249623	102250623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-5.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	320.35	308.26	279.34	255.72	218.33	307.05	287.28	298.46	221.08
Merged-chr9-14784581-3	chr9	14784020	14785020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310728)	promoter-TSS (NM_001310728)	53.0	NM_019683	56503.0	Mm.272618	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	257.42	291.22	172.97	220.63	299.5	181.66	220.74	241.87	137.4
Merged-chr11-120991337-3	chr11	120990855	120991855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139059)	promoter-TSS (NM_139059)	-22.0	NM_027874	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	231.68	263.57	164.64	221.98	250.05	156.74	235.53	212.24	104.3
Merged-chrX-73921906-3	chrX	73921406	73922406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310538)	promoter-TSS (NM_001310538)	38.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	24.6	29.03	38.85	27.66	26.12	30.54	28.52	30.51	34.35
Merged-chr7-4503965-3	chr7	4503458	4504458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011618)	TTS (NM_011618)	-2278.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	65.21	58.52	57.35	78.27	42.45	85.2	61.26	84.45	59.33
Merged-chr11-116131121-3	chr11	116130641	116131641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178802)	promoter-TSS (NM_178802)	-13.0	NM_178802	338364.0	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	396.43	431.75	307.08	398.76	465.11	311.07	310.52	435.98	264.18
Merged-chr5-144248387-3	chr5	144247879	144248879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 1 of 2)	intron (NM_001163709, intron 1 of 2)	3942.0	NM_001163709	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	17.73	12.9	11.1	28.34	21.93	31.35	27.46	12.38	14.36
Merged-chrX-101532635-3	chrX	101532127	101533127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290729)	promoter-TSS (NM_001290729)	-108.0	NM_001290729	270627.0	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	102.97	129.02	65.67	91.09	112.9	76.36	97.17	127.79	36.22
Merged-chr5-137600745-3	chr5	137600245	137601245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254762)	promoter-TSS (NM_001254762)	-37.0	NM_001254762	68929.0	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	176.76	170.03	116.54	205.79	204.8	194.52	174.27	196.76	94.3
Merged-chr2-120567638-3	chr2	120567149	120568149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177793)	promoter-TSS (NM_001177793)	-22.0	NM_001177792	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	239.12	174.18	142.44	204.44	149.28	139.06	211.24	240.1	128.65
Merged-chr11-69411319-3	chr11	69410824	69411824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	2351.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	580.63	387.98	306.16	534.38	366.68	314.28	411.91	450.13	236.07
Merged-chr7-19933672-3	chr7	19933174	19934174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12531.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	92.67	83.4	47.17	119.43	92.84	108.51	73.93	64.11	43.72
Merged-chr14-31129050-3	chr14	31128558	31129558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308464)	promoter-TSS (NM_001308464)	-128.0	NM_001308464	66487.0	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	131.57	106.9	115.62	145.74	127.36	110.92	122.52	160.95	59.33
Merged-chr8-77483865-3	chr8	77483362	77484362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-33194.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	36.04	20.74	19.42	45.21	34.52	27.33	28.52	19.9	7.49
Merged-chr6-3201487-3	chr6	3200978	3201978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87041.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	31.46	31.79	5.55	14.84	11.2	1.61	13.73	12.38	7.49
Merged-chr19-53119457-3	chr19	53118959	53119959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20984.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	9.72	7.37	0.0	8.1	7.46	9.65	8.45	7.07	13.74
Merged-chr13-67360598-3	chr13	67360113	67361113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038651)	promoter-TSS (NM_001038651)	-41.0	NM_001038651	629016.0	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	122.99	166.34	133.19	145.06	145.55	158.35	166.88	154.32	96.8
Merged-chr3-94954025-3	chr3	94953520	94954520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017395)	promoter-TSS (NM_017395)	-88.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	374.7	432.22	169.27	302.27	317.23	209.79	343.26	420.5	121.78
Merged-chr13-20788178-3	chr13	20787671	20788671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5942.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	74.37	79.25	74.0	84.34	76.51	76.36	115.12	146.36	77.44
Merged-chr17-35994464-3	chr17	35993945	35994945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015618)	promoter-TSS (NR_015618)	-59.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	168.18	168.19	67.52	124.82	96.57	90.02	186.94	197.65	86.18
Merged-chr16-73770781-3	chr16	73770282	73771282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	571285.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	28.6	41.93	28.67	47.23	51.78	64.3	62.31	48.2	36.85
Merged-chr14-14801000-3	chr14	14800507	14801507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19808.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	55.49	60.36	41.62	35.09	38.25	68.32	55.98	42.89	56.83
Merged-chr12-35799446-3	chr12	35798948	35799948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104330.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	11.44	6.45	5.55	13.49	5.6	4.02	3.17	2.65	5.0
Merged-chr8-84207973-3	chr8	84207470	84208470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029741)	promoter-TSS (NR_029741)	-548.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	77.8	90.77	70.3	76.92	42.92	71.54	62.31	62.35	56.21
Merged-chr8-120322013-3	chr8	120321575	120322575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93845.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	17.16	11.52	5.55	18.22	11.2	13.66	31.69	15.03	12.49
Merged-chr6-113379486-3	chr6	113378994	113379994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170485, intron 1 of 3)	intron (NM_001170485, intron 1 of 3)	1381.0	NM_001170486	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	44.05	70.04	64.75	29.01	35.45	55.46	53.87	64.56	61.2
Merged-chr4-141547528-3	chr4	141547012	141548012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	1350.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	244.27	255.74	162.79	149.79	100.3	128.61	217.57	300.67	136.15
Merged-chr16-36997850-3	chr16	36997347	36998347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-7380.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	20.59	17.05	12.95	42.51	23.79	20.9	27.46	29.63	6.87
Merged-chr7-121446432-3	chr7	121445926	121446926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	54130.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	34.32	35.94	37.0	43.18	28.46	44.21	39.08	18.57	25.61
Merged-chr17-34119375-3	chr17	34118862	34119862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037970, exon 1 of 13)	non-coding (NR_037970, exon 1 of 13)	538.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	247.13	188.46	142.44	244.25	132.49	124.59	180.61	145.92	119.28
Merged-chr2-18027579-3	chr2	18027069	18028069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028376, exon 2 of 2)	non-coding (NR_028376, exon 2 of 2)	320.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	15.45	23.04	35.15	16.19	13.06	16.08	19.01	13.27	3.75
Merged-chr2-155826695-3	chr2	155826200	155827200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010579, exon 1 of 6)	5' UTR (NM_010579, exon 1 of 6)	225.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	133.29	144.23	135.97	91.76	89.57	114.94	143.64	133.98	112.42
Merged-chr7-6331336-3	chr7	6330844	6331844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-910.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	32.04	26.26	31.45	22.94	21.93	33.76	44.36	21.67	31.85
Merged-chr17-23803033-3	chr17	23802523	23803523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175229)	promoter-TSS (NM_175229)	-164.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	405.01	330.84	209.96	331.96	278.51	243.55	336.92	285.2	167.37
Merged-chr11-74648143-3	chr11	74647625	74648625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1370.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	324.93	290.29	154.47	307.0	216.93	237.12	242.92	298.02	148.01
Merged-chr5-33378529-3	chr5	33378018	33379018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081101)	promoter-TSS (NM_001081101)	-178.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	192.78	204.13	181.29	168.0	195.47	188.89	188.0	219.31	133.65
Merged-chr4-12036769-3	chr4	12036296	12037296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51161.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	19.45	9.22	11.1	10.8	9.8	7.23	19.01	20.34	8.74
Merged-chr7-31042178-2	chr7	31041664	31042664	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	167.0	NM_008761	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	56.06	50.69	34.22	80.29	75.11	80.38	76.05	63.67	46.22
Merged-chr9-65032411-3	chr9	65031917	65032917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028906)	promoter-TSS (NM_028906)	-41.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	249.42	215.19	246.04	241.55	181.01	192.11	266.16	227.72	134.27
Merged-chr7-16244282-3	chr7	16243795	16244795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176912)	promoter-TSS (NM_176912)	-141.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	140.73	102.75	106.37	122.12	65.31	110.92	159.48	158.74	97.43
Merged-chr4-141573342-1	chr4	141572842	141573842	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26582.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	9.72	4.61	14.8	13.49	6.53	8.04	9.51	5.31	9.37
Merged-chr7-127017366-3	chr7	127016858	127017858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030240)	promoter-TSS (NM_030240)	-6.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	52.06	58.52	54.57	40.48	39.65	69.13	50.7	60.58	59.95
Merged-chr2-152029392-3	chr2	152028881	152029881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29515.0	NM_001164820	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	6.86	0.92	1.85	5.4	0.47	0.0	1.06	1.77	1.25
Merged-chr1-33876528-3	chr1	33876004	33877004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 3 of 6)	MIRb|SINE|MIR	31117.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	68.07	83.86	37.92	56.68	61.11	37.78	42.25	49.08	36.85
Merged-chr11-72441300-3	chr11	72440811	72441811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016776)	promoter-TSS (NM_016776)	-16.0	NM_016776	18432.0	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	70.36	66.81	55.5	68.15	65.78	81.18	66.54	69.42	53.08
Merged-chr11-30771718-3	chr11	30771216	30772216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134013)	promoter-TSS (NM_134013)	-59.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	326.64	323.93	281.19	298.9	332.62	262.84	241.87	175.98	151.76
Merged-chr6-50377988-4	chr6	50377448	50378448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	L1MB1|LINE|L1	4889.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	278.02	268.64	155.39	186.9	153.48	135.84	241.87	264.42	111.17
Merged-chr11-48818518-3	chr11	48818017	48819017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1126.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	104.11	120.26	41.62	118.08	87.24	75.56	113.01	159.18	70.57
Merged-chr10-127211668-3	chr10	127211175	127212175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-53.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	49.2	35.94	26.82	75.57	76.04	34.56	70.76	42.89	12.49
Merged-chr19-4232317-3	chr19	4231814	4232814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132280)	promoter-TSS (NR_132280)	-101.0	NR_132280	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	203.08	129.94	136.89	157.21	81.64	175.23	130.97	163.6	109.92
Merged-chr5-63812455-3	chr5	63811964	63812964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-31.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	23.45	29.95	12.95	52.63	29.86	18.49	46.47	34.93	20.61
Merged-chr9-22411505-3	chr9	22411000	22412000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026739)	promoter-TSS (NM_026739)	-11.0	NM_026739	68283.0	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	18.31	13.82	3.7	16.19	8.4	11.25	12.67	5.75	1.25
Merged-chr8-35393640-3	chr8	35393147	35394147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17906.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	33.18	33.64	26.82	53.98	29.39	53.05	67.6	61.9	46.22
Merged-chrX-13071411-3	chrX	13070937	13071937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009481)	promoter-TSS (NM_009481)	-61.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	220.81	187.08	176.67	207.14	151.62	120.57	178.5	179.96	131.78
Merged-chr15-57921550-3	chr15	57921021	57922021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081396, intron 3 of 20)	intron (NM_001081396, intron 3 of 20)	9322.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	181.91	166.8	147.07	151.81	134.82	125.39	185.89	190.13	103.05
Merged-chr2-74578985-3	chr2	74578482	74579482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027133)	promoter-TSS (NM_027133)	-34.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	24.03	15.67	14.8	22.94	18.66	16.08	28.52	18.57	21.23
Merged-chr6-146410039-3	chr6	146409518	146410518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 9 of 56)	B3|SINE|B2	92205.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	17.16	21.66	21.27	14.84	19.13	32.96	44.36	37.14	17.49
Merged-chr11-3332369-3	chr11	3331852	3332852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178149, intron 3 of 5)	CpG-1656	1621.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	5.72	11.06	3.7	14.17	13.06	1.61	11.62	5.75	5.0
Merged-chr19-59074599-3	chr19	59074102	59075102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1467.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	139.58	152.52	90.65	103.91	109.63	104.49	94.0	136.63	104.92
Merged-chr10-62948748-3	chr10	62948254	62949254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177372, intron 1 of 20)	intron (NM_177372, intron 1 of 20)	1725.0	NM_177372	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	7.44	5.99	3.7	14.84	10.73	14.47	9.51	7.07	0.0
Merged-chr7-97480921-3	chr7	97480412	97481412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027256)	promoter-TSS (NM_027256)	-44.0	NM_027256	101861.0	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	28.6	23.04	10.17	26.31	24.72	32.96	21.12	26.97	8.74
Merged-chr1-191575647-3	chr1	191575156	191576156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	20.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	169.33	160.35	141.52	131.57	125.02	109.32	121.46	122.92	94.3
Merged-chr9-21016720-3	chr9	21016226	21017226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	intron (NM_010493, intron 1 of 6)	786.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	194.5	131.78	99.89	176.78	83.97	83.59	170.05	156.53	106.17
Merged-chr9-21125747-4	chr9	21125262	21126262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205312, intron 3 of 24)	ID_B1|SINE|B4	5513.0	NM_018793	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	89.81	95.84	98.05	98.51	70.91	82.79	71.82	75.17	79.94
Merged-chr17-24169582-3	chr17	24169097	24170097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361535)	promoter-TSS (NM_001361535)	81.0	NM_001361532	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	479.38	490.27	361.66	503.34	432.45	491.92	557.67	672.98	337.25
Merged-chr9-13541004-3	chr9	13540504	13541504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78985.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	72.65	51.61	68.45	51.28	33.59	28.13	46.47	45.99	34.97
Merged-chr3-51277438-3	chr3	51276985	51277985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291063)	promoter-TSS (NM_001291063)	29.0	NM_001291063	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	202.51	179.71	200.71	197.69	189.4	200.14	189.06	182.17	116.16
Merged-chr2-128943929-4	chr2	128943411	128944411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020594, exon 1 of 9)	exon (NM_020594, exon 1 of 9)	109.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	73.22	60.36	73.07	120.1	102.17	104.49	78.16	83.57	60.58
Merged-chr9-102860169-3	chr9	102859667	102860667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	25247.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	11.44	17.51	5.55	6.75	6.06	16.08	8.45	2.21	5.0
Merged-chr3-116662653-3	chr3	116662156	116663156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008246)	promoter-TSS (NM_008246)	21.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	185.35	144.23	129.49	178.8	138.09	115.75	142.59	119.39	71.2
Merged-chr2-45219998-3	chr2	45219486	45220486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102544.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	30.89	24.42	9.25	25.64	18.66	14.47	21.12	16.8	8.12
Merged-chr6-119175325-3	chr6	119174893	119175893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033379, exon 1 of 9)	exon (NM_001033379, exon 1 of 9)	140.0	NM_001033379	319618.0	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	34.32	33.18	24.05	39.81	45.25	52.25	59.15	49.08	19.98
Merged-chr7-19468519-3	chr7	19468006	19469006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10012.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	61.21	54.37	29.6	68.82	45.25	53.05	126.74	117.17	78.69
Merged-chr4-15987383-3	chr4	15986875	15987875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 13 of 15)	Lx9|LINE|L1	26463.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	32.04	33.64	36.07	26.31	21.93	15.27	29.57	38.47	11.87
Merged-chr3-27195335-3	chr3	27194836	27195836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	RMER1A|Other|Other	12332.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	55.49	54.37	39.77	59.38	67.18	53.05	33.8	37.58	28.73
Merged-chr2-169779244-1	chr2	169778744	169779744	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	145598.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.72	1.38	3.7	5.4	1.87	0.0	61.26	36.7	18.74
Merged-chr10-98914407-3	chr10	98913888	98914888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-254.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	383.85	275.09	279.34	470.95	348.95	274.9	304.18	325.88	171.12
Merged-chr6-120955371-3	chr6	120954856	120955856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-3488.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	65.79	99.53	50.87	60.05	48.52	27.33	50.7	66.33	38.72
Merged-chr5-113776362-3	chr5	113775849	113776849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 3 of 4)	intron (NM_025526, intron 3 of 4)	3537.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	138.44	130.86	84.17	145.06	102.63	127.8	105.62	140.17	86.18
Merged-chr15-83464692-3	chr15	83464179	83465179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-73.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	68.65	44.24	49.02	60.05	33.12	64.3	58.09	40.24	29.35
Merged-chr9-108053063-3	chr9	108052567	108053567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177275)	promoter-TSS (NM_177275)	-92.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	27.46	24.42	27.75	17.54	10.26	33.76	26.4	14.59	26.23
Merged-chr1-87853309-3	chr1	87852811	87853811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177646)	promoter-TSS (NM_177646)	24.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	105.26	72.34	67.52	143.71	89.1	122.98	104.56	56.6	46.84
Merged-chr2-103583477-3	chr2	103582966	103583966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	17156.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	33.18	10.14	2.77	24.29	2.33	11.25	12.67	7.52	5.62
Merged-chr6-83653217-1	chr6	83652717	83653717	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 4 of 7)	exon (NM_016751, exon 4 of 7)	2899.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	87.52	129.48	97.12	135.62	152.55	140.66	162.65	146.8	62.45
Merged-chr4-58912198-3	chr4	58911683	58912683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355697)	promoter-TSS (NM_001355697)	-253.0	NM_001355696	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	189.35	199.06	202.56	220.63	220.19	235.51	190.11	129.11	103.05
Merged-chr18-77820907-3	chr18	77820420	77821420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	L1ME2|LINE|L1	-24530.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	96.11	107.82	104.52	93.11	70.44	116.55	94.0	114.08	48.71
Merged-chr4-122886074-3	chr4	122885590	122886590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358036)	promoter-TSS (NM_001358036)	-14.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	323.21	397.66	301.53	309.7	334.49	274.09	310.52	381.59	235.45
Merged-chr8-109737785-3	chr8	109737278	109738278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080930)	promoter-TSS (NM_001080930)	-39.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	151.59	112.43	69.37	105.93	98.43	131.82	158.43	96.83	71.82
Merged-chr9-5344299-3	chr9	5343806	5344806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1170.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	28.03	34.56	39.77	14.84	22.39	32.96	25.35	20.34	20.61
Merged-chr12-98370967-3	chr12	98370465	98371465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102330.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	5.72	10.14	13.87	10.8	6.06	10.45	7.39	6.63	7.49
Merged-chr5-21737210-3	chr5	21736703	21737703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028431)	promoter-TSS (NM_028431)	43.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	49.77	43.31	35.15	53.3	41.05	27.33	59.15	38.03	25.61
Merged-chr16-45038822-2	chr16	45038319	45039319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55192.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	14.3	17.05	24.97	20.92	12.6	17.68	9.51	7.52	11.24
Merged-chr12-25330258-3	chr12	25329767	25330767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201093.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	36.61	45.62	36.07	39.81	23.33	51.44	33.8	37.58	42.47
Merged-chr2-73056276-3	chr2	73055763	73056763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75817.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	171.04	192.15	128.57	202.42	197.33	162.37	252.43	280.33	134.9
Merged-chr2-43772855-3	chr2	43772359	43773359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	24035.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	33.75	42.39	24.05	35.09	37.79	25.72	46.47	36.26	24.98
Merged-chr11-83593043-3	chr11	83592537	83593537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	50.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	163.61	131.78	123.94	159.91	125.02	133.43	185.89	183.5	101.17
Merged-chr2-37430828-3	chr2	37430342	37431342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146253)	promoter-TSS (NM_146253)	77.0	NM_146253	241322.0	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	114.41	125.33	130.42	123.47	129.22	158.35	164.76	160.51	107.42
Merged-chr14-75034409-3	chr14	75033931	75034931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 2 of 13)	intron (NM_198642, intron 2 of 13)	18404.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	40.62	29.95	44.4	39.81	25.19	24.92	34.85	31.84	26.23
Merged-chr15-97213300-3	chr15	97212806	97213806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33801.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	54.92	70.04	43.47	58.7	61.11	60.28	55.98	61.02	41.22
Merged-chr16-57167290-3	chr16	57166768	57167768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023175)	promoter-TSS (NM_023175)	64.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	104.11	122.57	122.09	115.38	100.3	108.51	120.41	116.73	78.69
Merged-chr6-54948781-3	chr6	54948252	54949252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	22909.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	141.3	138.24	111.92	92.44	112.43	106.1	87.66	118.5	97.43
Merged-chr15-53140439-3	chr15	53139917	53140917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	205766.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	111.55	86.63	41.62	99.86	67.18	65.11	49.64	58.81	25.61
Merged-chr17-72967139-3	chr17	72966643	72967643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48838.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	19.45	21.2	22.2	12.14	15.39	23.31	29.57	10.61	25.61
Merged-chr1-136675120-3	chr1	136674603	136675603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8293.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	194.5	213.8	142.44	226.03	215.99	163.17	295.73	316.59	136.77
Merged-chr16-57423134-3	chr16	57422616	57423616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	PB1D11|SINE|Alu	69839.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	140.73	140.08	97.12	130.22	108.7	85.2	113.01	114.96	71.2
Merged-chr6-87130859-3	chr6	87130371	87131371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	26125.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	23.45	25.8	20.35	24.29	18.66	19.29	55.98	40.24	18.74
Merged-chr5-24454470-3	chr5	24453970	24454970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	2293.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	29.17	16.13	24.97	24.96	24.72	40.19	15.84	15.92	20.61
Merged-chrX-20688427-3	chrX	20687915	20688915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011049)	promoter-TSS (NM_011049)	-11.0	NM_011049	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	211.09	207.35	153.54	170.7	151.62	150.31	171.1	182.62	116.79
Merged-chr1-188984195-1	chr1	188983695	188984695	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153196, intron 10 of 17)	intron (NR_153196, intron 10 of 17)	23645.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	3.43	8.75	26.82	4.05	6.06	14.47	40.14	52.62	31.85
Merged-chr15-5951098-3	chr15	5950609	5951609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93595.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	14.3	18.43	15.72	13.49	15.39	12.06	23.24	11.94	7.49
Merged-chrX-10331946-3	chrX	10331434	10332434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79629.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	6.29	9.68	6.47	7.42	5.13	11.25	5.28	7.96	3.75
Merged-chr19-53310477-3	chr19	53309978	53310978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008542)	promoter-TSS (NM_001008542)	-28.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	78.94	50.23	38.85	78.94	36.39	84.4	68.65	44.66	35.6
Merged-chr8-72548920-3	chr8	72548459	72549459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-649.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	54.92	72.8	88.8	63.42	85.84	93.24	67.6	66.77	48.09
Merged-chr12-38778713-3	chr12	38778227	38779227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1355.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	127.57	135.47	106.37	114.7	85.84	76.36	96.11	103.02	64.95
Merged-chr19-55689746-3	chr19	55689241	55690241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	12463.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	46.91	33.64	31.45	29.01	16.79	21.7	27.46	27.86	16.86
Merged-chr6-3346100-1	chr6	3345600	3346600	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53471.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.72	7.37	0.0	2.02	7.46	1.61	92.94	100.81	22.48
Merged-chr16-23107407-3	chr16	23106902	23107902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123037)	promoter-TSS (NM_001123037)	-66.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	232.83	268.18	179.44	208.49	210.4	167.99	228.14	253.8	134.27
Merged-chr9-107744291-3	chr9	107743797	107744797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_148930, exon 21 of 25)	exon (NM_148930, exon 21 of 25)	26705.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	131.0	116.58	70.3	120.77	93.77	101.28	95.06	110.1	69.95
Merged-chr6-16964147-3	chr6	16963670	16964670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	34.9	31.33	21.27	37.78	20.99	28.94	32.74	24.76	35.6
Merged-chrX-48694993-3	chrX	48694474	48695474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173376)	promoter-TSS (NM_173376)	-30.0	NM_173376	209003.0	Mm.32561	NM_173376	ENSMUSG00000031107	Rbmx2	2700089A17Rik|2810411A03Rik|CGI-79	RNA binding motif protein, X-linked 2	protein-coding	7.44	9.68	9.25	10.12	15.39	19.29	14.79	8.84	12.49
Merged-chr8-70720105-3	chr8	70719625	70720625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195253, intron 1 of 3)	intron (NM_001195253, intron 1 of 3)	1582.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	122.99	133.63	81.4	149.11	124.56	127.0	100.34	149.45	66.2
Merged-chr9-61960995-3	chr9	61960493	61961493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 7 of 7)	MER5A|DNA|hAT-Charlie	-14194.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	110.41	127.18	110.07	89.06	66.71	103.69	101.39	92.86	63.08
Merged-chr8-4493417-3	chr8	4492918	4493918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026058)	promoter-TSS (NM_026058)	13.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	41.19	32.25	18.5	34.41	20.06	31.35	26.4	19.9	25.61
Merged-chr15-36719435-3	chr15	36718938	36719938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71494.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.0	4.61	1.85	10.12	5.13	1.61	12.67	7.52	1.25
Merged-chr4-154944404-3	chr4	154943896	154944896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16319.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	164.18	170.03	123.02	151.14	153.48	106.9	84.49	95.95	41.22
Merged-chr10-30778950-3	chr10	30778443	30779443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	Lx7|LINE|L1	24383.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	81.8	59.44	31.45	89.74	46.18	37.78	49.64	52.18	32.48
Merged-chr15-25843144-3	chr15	25842587	25843587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034851)	promoter-TSS (NM_001034851)	-211.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	15.45	9.68	3.7	36.43	10.26	18.49	16.9	11.05	7.49
Merged-chr5-140508843-3	chr5	140508323	140509323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	3214.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	54.35	50.23	38.85	82.32	65.78	56.27	96.11	74.73	50.59
Merged-chr13-40900168-3	chr13	40899678	40900678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008105, intron 1 of 2)	intron (NM_008105, intron 1 of 2)	13420.0	NM_008105	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	10.87	10.14	8.32	12.14	12.13	7.23	11.62	4.86	3.75
Merged-chr8-11756059-3	chr8	11755559	11756559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113517, intron 1 of 18)	Tigger17|DNA|TcMar-Tigger	-2271.0	NM_017402	54126.0	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	6.86	12.9	1.85	3.37	3.27	4.82	5.28	4.42	7.49
Merged-chr17-29000641-3	chr17	29000140	29001140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357173, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	7355.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	66.36	55.29	81.4	45.88	44.32	70.73	60.2	63.67	61.2
Merged-chr10-95367887-3	chr10	95367382	95368382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	31606.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	37.18	17.97	21.27	33.74	14.46	4.82	30.63	23.88	13.74
Merged-chr1-7824198-2	chr1	7823698	7824698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	735278.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.0	6.91	3.7	3.37	3.73	4.82	1.06	5.31	0.0
Merged-chr5-105696211-3	chr5	105695730	105696730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3739.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	100.11	76.95	62.9	91.76	75.11	73.14	100.34	125.58	86.18
Merged-chr7-4501766-3	chr7	4501267	4502267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029834)	promoter-TSS (NM_029834)	-87.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	391.86	342.36	303.38	360.97	254.25	257.21	387.62	335.16	213.59
Merged-chr6-125573400-3	chr6	125572890	125573890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	20442.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	173.9	215.65	164.64	181.5	210.4	145.49	212.29	283.87	140.52
Merged-chr11-76845716-3	chr11	76845207	76846207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007754, intron 1 of 20)	intron (NM_007754, intron 1 of 20)	1301.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	34.32	29.49	6.47	50.6	34.06	23.31	30.63	23.88	12.49
Merged-chr8-107100482-3	chr8	107099990	107100990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3945.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	36.61	19.81	9.25	24.96	23.33	31.35	33.8	30.07	23.73
Merged-chr4-58423370-3	chr4	58422877	58423877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17721.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	41.76	61.75	61.97	35.76	35.45	23.31	60.2	63.23	41.84
Merged-chr5-31054767-3	chr5	31054185	31055185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-95.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	48.62	24.42	31.45	41.83	34.06	49.83	46.47	51.73	36.85
Merged-chr5-123862823-1	chr5	123862323	123863323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030701)	TTS (NM_030701)	2693.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	220.24	210.58	112.84	216.58	162.81	80.38	226.02	315.71	130.53
Merged-chr3-142494066-3	chr3	142493535	142494535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	85.24	63.59	74.0	57.35	29.39	34.56	89.78	76.49	59.33
Merged-chr7-28381189-3	chr7	28380711	28381711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	426.75	325.31	183.14	366.37	299.03	197.73	320.02	434.65	149.26
Merged-chr5-30897945-1	chr5	30897445	30898445	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048192, intron 12 of 16)	intron (NM_001048192, intron 12 of 16)	8611.0	NM_001294262	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	20.59	21.66	25.9	34.41	11.2	25.72	24.29	18.57	23.73
Merged-chr2-158160100-3	chr2	158159572	158160572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13680.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	138.44	135.93	127.64	130.22	115.23	114.14	175.33	180.4	73.69
Merged-chr15-59653862-1	chr15	59653362	59654362	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	5208.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	47.48	17.97	19.42	45.88	19.59	13.66	36.97	16.8	21.23
Merged-chr16-49905390-3	chr16	49904892	49905892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	49738.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	193.35	223.02	127.64	266.51	229.06	249.17	316.86	331.18	126.78
Merged-chr2-80150259-2	chr2	80149758	80150758	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20600.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.86	1.38	0.0	5.4	1.87	1.61	5.28	3.54	10.62
Merged-chr10-94107357-3	chr10	94106855	94107855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-40576.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	24.03	49.76	49.02	22.27	34.52	26.53	54.92	42.45	37.47
Merged-chr2-22748178-3	chr2	22747661	22748661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26166.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	114.98	135.47	66.6	111.33	71.38	110.92	100.34	127.34	91.18
Merged-chr7-111028882-3	chr7	111028377	111029377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009431)	promoter-TSS (NM_009431)	-74.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	100.68	146.07	127.64	102.56	124.09	127.8	129.91	129.11	104.3
Merged-chr3-108044912-3	chr3	108044399	108045399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026764)	promoter-TSS (NM_026764)	-40.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	70.93	65.89	59.2	113.35	82.11	65.91	104.56	91.09	86.81
Merged-chr10-127635246-3	chr10	127634745	127635745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7741.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	118.99	84.32	58.27	121.45	66.71	116.55	79.21	103.47	69.32
Merged-chr5-53588612-3	chr5	53588113	53589113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	-1733.0	NM_009035	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	76.66	52.99	23.12	87.71	60.65	51.44	51.75	44.66	30.6
Merged-chr10-7212778-3	chr10	7212274	7213274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172546)	promoter-TSS (NM_172546)	-537.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	351.24	475.07	257.14	354.9	417.99	232.29	259.82	367.0	150.51
Merged-chr12-75669652-3	chr12	75669167	75670167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028203)	promoter-TSS (NM_028203)	-130.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	81.23	132.71	94.35	104.58	136.22	106.9	148.92	132.21	64.33
Merged-chr19-38011567-3	chr19	38011054	38012054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	32023.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	109.26	131.32	61.05	103.23	87.24	86.01	76.05	64.56	52.46
Merged-chr6-37442346-3	chr6	37441843	37442843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178661)	promoter-TSS (NM_178661)	-195.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	136.15	189.84	86.95	129.55	148.82	131.02	176.38	176.42	73.69
Merged-chr4-105263818-3	chr4	105263317	105264317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106470.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	108.12	78.79	56.42	103.91	39.65	73.95	94.0	87.99	59.95
Merged-chr10-42862455-3	chr10	42861948	42862948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	1936.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	20.59	37.78	26.82	19.57	25.66	30.54	29.57	23.88	19.98
Merged-chr5-138255693-3	chr5	138255218	138256218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081108, exon 1 of 4)	5' UTR (NM_001081108, exon 1 of 4)	236.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	89.24	99.53	87.87	88.39	95.63	96.45	98.23	118.5	64.33
Merged-chrX-129750865-3	chrX	129750354	129751354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	1112.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	38.33	41.01	47.17	37.11	23.33	52.25	54.92	56.6	27.48
Merged-chr11-17211584-3	chr11	17211063	17212063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178909)	promoter-TSS (NM_178909)	26.0	NM_025443	66249.0	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	95.53	110.13	93.42	113.35	102.63	100.47	86.61	84.01	59.33
Merged-chr2-167895213-3	chr2	167894699	167895699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-37128.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	20.59	5.99	1.85	16.19	8.86	6.43	15.84	0.88	3.75
Merged-chr15-102510808-3	chr15	102510312	102511312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358844)	promoter-TSS (NM_001358844)	-112.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	45.76	55.29	20.35	41.16	38.25	42.6	42.25	29.63	19.98
Merged-chr15-79357183-3	chr15	79356687	79357687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304832, intron 2 of 2)	intron (NM_001304832, intron 2 of 2)	8785.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	117.84	33.64	9.25	114.03	24.72	28.13	149.98	137.51	65.58
Merged-chr6-128424678-3	chr6	128424187	128425187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133927, intron 1 of 11)	CpG	223.0	NM_133927	101142.0	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	399.29	484.28	321.88	415.63	486.1	360.9	428.81	457.2	221.08
Merged-chr2-30133743-3	chr2	30133229	30134229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-17.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	434.19	468.16	255.29	403.48	348.48	294.99	381.28	508.05	179.24
Merged-chr18-78312288-3	chr18	78311795	78312795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207651, intron 3 of 21)	intron (NM_207651, intron 3 of 21)	-105855.0	NM_001110274	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	9.15	11.98	13.87	8.77	0.93	8.04	2.11	4.86	3.75
Merged-chr16-4969616-3	chr16	4969094	4970094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073370, intron 4 of 8)	intron (NR_073370, intron 4 of 8)	5306.0	NM_001271586	74684.0	Mm.374835	NM_001271586	ENSMUSG00000022543	4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	14.87	14.75	3.7	16.87	9.33	12.86	9.51	5.31	9.37
Merged-chr12-84114321-3	chr12	84113836	84114836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346528)	promoter-TSS (NM_001346528)	8.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	8.01	8.75	12.02	13.49	9.33	4.82	15.84	6.19	9.99
Merged-chr11-94321636-3	chr11	94321151	94322151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361574, intron 1 of 9)	CpG	312.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	323.78	288.45	232.16	277.31	299.03	203.36	306.29	288.74	172.37
Merged-chr11-8574743-3	chr11	8574246	8575246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89789.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	209.94	184.77	153.54	190.95	196.4	127.8	158.43	194.55	82.44
Merged-chr3-63976168-3	chr3	63975665	63976665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033300)	promoter-TSS (NM_001033300)	22.0	NM_001033300	229363.0	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	120.13	121.19	106.37	107.95	133.89	127.8	127.8	98.6	91.18
Merged-chr12-108761409-3	chr12	108760914	108761914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31897.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	113.84	115.2	86.02	101.21	138.55	141.47	123.57	153.43	79.94
Merged-chr4-62663580-3	chr4	62663066	62664066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-10408.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	156.74	163.12	131.34	138.99	90.97	155.13	161.6	185.27	138.65
Merged-chr11-95041435-3	chr11	95040928	95041928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-57.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	30.89	28.57	23.12	35.76	27.52	58.68	33.8	47.31	39.35
Merged-chr10-60341768-3	chr10	60341270	60342270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	ORR1E|LTR|ERVL-MaLR	-5081.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	27.46	11.52	5.55	33.74	12.13	22.51	9.51	12.82	6.25
Merged-chr4-45949313-3	chr4	45948795	45949795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198660, intron 36 of 37)	intron (NM_198660, intron 36 of 37)	-16040.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	22.88	11.52	4.62	20.92	15.86	33.76	24.29	26.53	32.48
Merged-chr4-121024104-3	chr4	121023598	121024598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6851.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	34.32	18.89	26.82	36.43	22.86	17.68	13.73	14.15	8.74
Merged-chr8-109193948-3	chr8	109193441	109194441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126329, intron 5 of 9)	intron (NR_126329, intron 5 of 9)	55804.0	NR_151498	105243282.0	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	13.16	13.82	12.02	6.75	5.6	11.25	7.39	2.65	3.12
Merged-chr7-30194045-3	chr7	30193522	30194522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009795, exon 2 of 11)	exon (NM_009795, exon 2 of 11)	1131.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	37.76	46.08	49.02	53.3	42.45	49.03	101.39	100.37	57.46
Merged-chr4-21727686-3	chr4	21727182	21728182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-19.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	50.34	46.54	12.95	41.16	37.79	30.54	26.4	27.86	26.23
Merged-chr7-141194092-3	chr7	141193615	141194615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130443)	promoter-TSS (NM_001130443)	-15.0	NM_001172065	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	36.04	26.26	21.27	39.81	23.33	45.01	33.8	22.55	26.23
Merged-chr11-90225024-2	chr11	90224528	90225528	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24448.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	105.83	97.69	69.37	128.2	111.03	98.06	74.99	90.64	53.71
Merged-chr1-180768578-3	chr1	180768068	180769068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42525.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	29.75	27.65	32.37	88.39	90.04	61.09	106.67	85.34	48.71
Merged-chr10-8778088-3	chr10	8777586	8778586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	107984.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	101.25	89.39	93.42	114.03	75.57	92.44	80.27	68.09	74.32
Merged-chr11-11691871-3	chr11	11691375	11692375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	1698.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	161.32	196.75	82.32	170.03	160.48	102.08	138.36	151.66	90.56
Merged-chr2-181739525-3	chr2	181739031	181740031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-23801.0	NM_001171615	17932.0	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	44.05	42.39	28.67	14.84	10.26	8.04	11.62	12.82	6.87
Merged-chr4-124693623-3	chr4	124693081	124694081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026031)	promoter-TSS (NM_026031)	-27.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	89.24	97.69	97.12	91.76	89.57	104.49	123.57	85.34	68.07
Merged-chr14-46760466-3	chr14	46759973	46760973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028222)	promoter-TSS (NM_028222)	-68.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	30.89	33.64	37.0	21.59	14.93	22.51	54.92	45.1	9.37
Merged-chr10-14174353-3	chr10	14173853	14174853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207974.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	45.19	19.35	29.6	39.81	12.6	16.08	36.97	31.39	19.98
Merged-chr8-111659260-3	chr8	111658785	111659785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	15842.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	56.63	51.61	22.2	53.98	35.92	53.85	46.47	35.37	32.48
Merged-chr19-45018038-3	chr19	45017525	45018525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-110.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	121.28	34.1	33.3	120.1	29.86	40.19	66.54	15.03	11.24
Merged-chr10-70287940-3	chr10	70287430	70288430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42654.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	22.88	53.91	16.65	49.93	48.98	24.11	57.03	48.2	23.11
Merged-chr19-10845639-3	chr19	10845154	10846154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3110.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	69.79	65.89	56.42	66.12	40.12	49.83	102.45	95.95	49.34
Merged-chr8-125734226-3	chr8	125733724	125734724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	21.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	102.97	110.13	102.67	150.46	111.5	113.33	119.35	129.55	68.7
Merged-chr8-122611513-3	chr8	122610966	122611966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021502)	promoter-TSS (NM_021502)	21.0	NM_001193645	50917.0	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	68.65	42.85	23.12	61.4	68.11	56.27	101.39	76.94	34.35
Merged-chr11-101008275-3	chr11	101007796	101008796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	122.42	106.44	53.65	104.58	87.7	66.71	101.39	123.81	46.84
Merged-chr2-69897235-3	chr2	69896774	69897774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303033)	promoter-TSS (NM_001303033)	28.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	151.59	103.68	110.07	144.39	90.04	123.78	111.96	49.96	65.58
Merged-chr3-126655273-3	chr3	126654771	126655771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	58320.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	50.91	56.22	44.4	57.35	41.52	35.37	51.75	55.71	43.72
Merged-chrM-12137-2	chrM	11688	12688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											241.98	208.74	27.75	162.61	57.38	38.58	136.25	41.12	29.98
Merged-chr4-99100911-3	chr4	99100400	99101400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	20015.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	10.87	15.21	9.25	12.14	6.06	3.22	9.51	5.75	9.37
Merged-chr12-101913150-3	chr12	101912646	101913646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028446)	promoter-TSS (NM_028446)	25.0	NM_028446	109181.0	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	213.38	221.64	158.17	174.08	223.46	153.52	194.34	172.0	96.18
Merged-chr6-13871537-3	chr6	13871046	13872046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	-23.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	286.03	354.8	217.36	269.89	278.51	192.11	276.72	393.97	179.86
Merged-chr4-34550441-3	chr4	34549930	34550930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007589)	promoter-TSS (NM_001007589)	-185.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	99.54	100.45	72.15	120.77	68.11	72.34	103.51	83.57	59.95
Merged-chr4-123749870-1	chr4	123749370	123750370	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023423, intron 1 of 4)	CpG	429.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	344.95	366.78	289.51	282.71	258.45	274.9	293.62	278.12	216.09
Merged-chr10-84573859-3	chr10	84573349	84574349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3098.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	14.3	16.13	22.2	24.29	21.46	20.9	26.4	21.22	16.24
Merged-chr11-110095804-1	chr11	110095304	110096304	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153145, intron 1 of 38)	intron (NM_153145, intron 1 of 38)	133.0	NM_153145	217258.0	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	18.31	12.44	1.85	19.57	17.26	19.29	6.34	7.52	8.74
Merged-chr13-73604752-3	chr13	73604249	73605249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146047, intron 1 of 16)	intron (NM_146047, intron 1 of 16)	747.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	125.85	123.95	66.6	124.15	105.9	91.63	136.25	119.83	49.96
Merged-chr13-83518458-1	chr13	83517958	83518958	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170537, intron 1 of 10)	intron (NM_001170537, intron 1 of 10)	-5198.0	NM_001347579	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	4.0	2.3	0.0	10.8	3.73	7.23	3.17	0.44	4.37
Merged-chr4-152039334-3	chr4	152038835	152039835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	14.0	NM_028727	74035.0	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	37.76	31.33	25.9	31.04	29.86	40.99	44.36	16.36	22.48
Merged-chr12-103425935-3	chr12	103425431	103426431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020494)	promoter-TSS (NM_020494)	-64.0	NM_020494	27225.0	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	94.39	121.19	88.8	78.27	118.96	102.88	100.34	120.27	64.95
Merged-chrUn_JH584304-29482-1	chrUn_JH584304	28982	29982	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30207.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	28.52	26.97	0.0
Merged-chr3-135608355-3	chr3	135607858	135608858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 12 of 24)	intron (NM_008689, intron 12 of 24)	83189.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	105.83	114.27	100.82	101.88	75.11	99.67	119.35	102.14	63.7
Merged-chr4-140989703-1	chr4	140989203	140990203	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	2830.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	96.11	86.17	95.27	108.63	128.76	161.56	110.9	106.56	63.7
Merged-chr16-8470761-3	chr16	8470275	8471275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146247)	promoter-TSS (NM_146247)	-38.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	58.35	57.14	47.17	70.85	63.45	74.75	68.65	50.85	23.73
Merged-chr11-102408649-3	chr11	102408140	102409140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1123.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	229.97	241.91	171.12	304.3	330.29	264.45	279.89	459.41	168.62
Merged-chr9-63989463-3	chr9	63988974	63989974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	32585.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	53.2	29.49	22.2	88.39	45.25	59.48	66.54	53.06	36.85
Merged-chrX-36758759-3	chrX	36758255	36759255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 2 of 3)	intron (NR_075097, intron 2 of 3)	15123.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	24.03	32.72	25.9	18.22	14.93	27.33	34.85	34.05	29.98
Merged-chrX-103529443-3	chrX	103528954	103529954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16046.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	54.35	58.06	24.97	24.29	40.12	41.8	33.8	41.12	43.72
Merged-chr5-134688826-3	chr5	134688332	134689332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-242.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	48.05	47.46	59.2	58.03	22.39	53.85	67.6	52.62	40.59
Merged-chr11-75173641-3	chr11	75173137	75174137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029546)	promoter-TSS (NR_029546)	-45.0	NR_029546	387150.0		NR_029546	ENSMUSG00000065537	Mir132	Mirn132|mir-132|mmu-mir-132	microRNA 132	ncRNA	170.47	125.33	80.47	240.87	148.35	107.71	142.59	147.24	78.07
Merged-chr1-33814501-3	chr1	33814006	33815006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359275)	promoter-TSS (NM_001359275)	89.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	105.26	85.25	73.07	114.03	79.77	97.26	83.44	69.42	54.33
Merged-chr2-168541376-3	chr2	168540813	168541813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	49052.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	58.35	55.29	58.27	101.21	66.71	57.07	45.42	23.43	19.98
Merged-chr1-89570671-3	chr1	89570167	89571167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	113225.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	37.18	23.96	35.15	72.87	49.92	57.07	13.73	12.82	13.74
Merged-chr10-44011560-3	chr10	44011055	44012055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6709.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	33.75	48.38	54.57	59.38	45.25	52.25	44.36	43.77	35.6
Merged-chr11-69846529-3	chr11	69846026	69847026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023564)	promoter-TSS (NM_023564)	-91.0	NM_023564	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	72.08	56.68	83.25	103.91	97.5	108.51	84.49	73.84	40.59
Merged-chr1-64122218-3	chr1	64121718	64122718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033563)	promoter-TSS (NM_033563)	-829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	466.22	409.64	335.76	491.87	488.43	314.28	362.27	420.06	249.81
Merged-chr10-8759394-3	chr10	8758893	8759893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	126677.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	137.86	189.38	78.62	149.79	141.82	98.06	121.46	141.49	77.44
Merged-chr11-6299686-3	chr11	6299213	6300213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010956, intron 2 of 22)	B3|SINE|B2	7134.0	NM_001361902	18293.0	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	50.34	52.07	48.1	76.24	39.19	36.17	64.43	83.13	46.22
Merged-chr18-80256150-3	chr18	80255668	80256668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164424)	promoter-TSS (NM_001164424)	-58.0	NM_001164424	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	121.85	143.76	162.79	119.43	147.42	160.76	134.14	115.85	87.43
Merged-chr15-30469037-3	chr15	30468549	30469549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	296456.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	98.39	134.09	82.32	102.56	124.09	117.35	135.19	179.08	84.31
Merged-chr19-43675375-1	chr19	43674875	43675875	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145156)	promoter-TSS (NM_145156)	197.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	195.07	202.75	160.94	158.56	176.34	176.83	198.56	222.85	164.25
Merged-chr12-4545640-3	chr12	4545147	4546147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	21534.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	13.16	18.43	28.67	19.57	13.53	17.68	12.67	18.57	30.6
Merged-chr2-160276162-3	chr2	160275671	160276671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51323.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	132.14	116.58	83.25	124.15	112.43	84.4	108.79	85.78	46.22
Merged-chr4-137365840-3	chr4	137365347	137366347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8088.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	133.29	112.43	97.12	110.65	93.3	71.54	96.11	101.26	109.92
Merged-chr11-98959662-3	chr11	98959174	98960174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001176528)	promoter-TSS (NM_001176528)	-797.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	218.52	139.62	137.82	181.5	111.5	135.04	167.93	176.87	80.56
Merged-chr15-75969141-3	chr15	75968625	75969625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347040)	promoter-TSS (NM_001347040)	2.0	NM_001081065	69020.0	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	26.89	31.33	29.6	22.27	24.72	39.39	32.74	22.11	16.24
Merged-chr16-91547556-3	chr16	91547054	91548054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	460.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	462.22	376.92	274.71	414.28	294.83	307.05	453.1	495.23	239.19
Merged-chr1-130428869-3	chr1	130428344	130429344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151525, intron 2 of 3)	intron (NR_151525, intron 2 of 3)	-5801.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	12.59	19.35	9.25	15.52	9.8	2.41	23.24	18.13	10.62
Merged-chr19-24477504-3	chr19	24476998	24477998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026520)	promoter-TSS (NM_026520)	-24.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	212.8	225.32	172.04	241.55	202.93	180.05	278.83	198.53	163.0
Merged-chr7-127922545-3	chr7	127922048	127923048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360699, intron 6 of 10)	intron (NM_001360699, intron 6 of 10)	7565.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	122.99	149.75	75.85	226.03	209.0	187.28	164.76	206.49	91.18
Merged-chr6-86472382-3	chr6	86471887	86472887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131125, exon 5 of 5)	non-coding (NR_131125, exon 5 of 5)	8443.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	395.29	284.76	197.02	396.73	282.24	197.73	344.32	342.68	145.51
Merged-chr5-17835890-3	chr5	17835421	17836421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159555)	promoter-TSS (NM_001159555)	-25.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	62.35	51.15	23.12	42.51	49.92	35.37	60.2	70.3	30.6
Merged-chr4-150013927-4	chr4	150013352	150014352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4829.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	102.4	108.28	72.15	133.59	113.83	75.56	132.02	137.07	92.43
Merged-chr2-173784561-3	chr2	173784081	173785081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019806)	TTS (NM_019806)	47010.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	55.49	42.39	55.5	66.12	74.17	98.87	64.43	49.08	34.35
Merged-chr1-35890677-3	chr1	35890185	35891185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177715.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	52.06	32.25	13.87	26.31	10.26	13.66	14.79	18.13	5.0
Merged-chr2-19554234-3	chr2	19553696	19554696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027600)	promoter-TSS (NM_027600)	-286.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	61.21	27.19	41.62	21.59	14.0	20.9	23.24	19.46	12.49
Merged-chr7-100961333-3	chr7	100960833	100961833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	3033.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	166.47	141.92	86.02	196.34	159.08	122.18	133.08	153.87	102.42
Merged-chr9-98986344-3	chr9	98985858	98986858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122851)	promoter-TSS (NM_001122851)	-15.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	49.77	35.94	27.75	49.25	54.58	45.01	53.87	50.41	19.98
Merged-chr1-180313076-3	chr1	180312572	180313572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17404.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	207.08	146.99	53.65	96.48	58.31	59.48	81.33	85.78	56.83
Merged-chr1-86064749-3	chr1	86064244	86065244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027357, exon 1 of 25)	5' UTR (NM_027357, exon 1 of 25)	125.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	153.88	199.06	108.22	172.73	191.27	159.15	140.47	169.35	86.81
Merged-chr8-91313379-3	chr8	91312890	91313890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173431)	promoter-TSS (NM_173431)	-135.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	137.29	137.31	73.07	43.86	37.32	44.21	115.12	126.46	48.09
Merged-chr5-101968116-3	chr5	101967610	101968610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	MTD|LTR|ERVL-MaLR	101811.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	278.02	244.22	165.57	275.96	211.79	221.04	253.48	289.18	111.79
Merged-chr17-50415846-3	chr17	50415344	50416344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-93703.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	94.39	99.53	49.02	76.24	66.24	90.83	109.84	110.1	69.32
Merged-chr1-191724875-3	chr1	191724378	191725378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	6483.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	27.46	38.71	37.0	23.62	22.39	38.58	44.36	31.39	32.48
Merged-chr10-60932155-5	chr10	60931661	60932661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5971.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	47.48	29.95	18.5	99.18	121.29	77.97	149.98	127.79	59.33
Merged-chr9-59656402-3	chr9	59655896	59656896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011099)	promoter-TSS (NM_011099)	28.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	105.26	93.08	107.29	100.53	105.9	137.45	120.41	110.98	79.32
Merged-chr9-78538821-3	chr9	78538319	78539319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172773, intron 10 of 10)	intron (NM_172773, intron 10 of 10)	49226.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	141.87	111.05	98.05	154.51	132.49	125.39	119.35	143.26	78.07
Merged-chr6-128760877-3	chr6	128760381	128761381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27760.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	182.49	192.15	135.97	176.78	156.75	122.98	119.35	166.25	66.2
Merged-chr1-173412118-3	chr1	173411639	173412639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-8465.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	105.83	134.55	54.57	138.99	87.24	62.7	80.27	89.76	60.58
Merged-chr16-20548563-3	chr16	20548078	20549078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030670)	promoter-TSS (NR_030670)	-22.0	NR_030670	100042948.0	Mm.406754	NR_030670		Gm15760	-	mitochondrial ribosomal protein S18B pseudogene	pseudo	132.14	128.1	123.94	126.17	103.56	109.32	119.35	159.62	96.18
Merged-chr14-19415803-3	chr14	19415311	19416311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	186776.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	270.01	920.65	55.5	379.87	1095.83	48.23	655.89	417.41	70.57
Merged-chr16-91869106-1	chr16	91868606	91869606	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 27 of 28)	intron (NM_001110275, intron 27 of 28)	62524.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	212.8	200.44	142.44	222.66	180.54	162.37	230.25	214.01	163.63
Merged-chr14-63078527-3	chr14	63078019	63079019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23446.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	227.68	226.25	125.79	238.18	211.33	201.75	262.99	298.02	130.53
Merged-chr16-17721345-3	chr16	17720837	17721837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 1 of 16)	(CACCC)n|Simple_repeat|Simple_repeat	1563.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	148.73	151.6	86.95	172.73	129.69	125.39	193.28	176.87	91.81
Merged-chr2-167925175-3	chr2	167924676	167925676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7151.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	167.61	144.69	129.49	164.63	132.95	161.56	160.54	204.72	81.81
Merged-chr5-35747037-3	chr5	35746538	35747538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7051.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	17.73	23.5	20.35	24.96	16.33	18.49	15.84	15.48	16.24
Merged-chr7-128410836-1	chr7	128410336	128411336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7336.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	80.09	93.08	96.2	62.75	55.51	62.7	51.75	61.9	46.22
Merged-chr10-41302778-1	chr10	41302278	41303278	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	463.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	65.79	70.96	58.27	76.24	102.63	91.63	61.26	84.45	84.94
Merged-chr7-43392563-3	chr7	43392076	43393076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-15704.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	13.16	10.6	7.4	10.12	9.33	6.43	8.45	9.73	6.25
Merged-chr11-3182017-1	chr11	3181517	3182517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11446.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	41.76	57.6	75.85	53.98	60.65	86.01	7.39	4.42	105.55
Merged-chr5-139327929-3	chr5	139327429	139328429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2465.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	36.61	33.64	65.67	49.25	40.12	63.5	48.58	47.75	28.73
Merged-chr1-106171549-3	chr1	106171044	106172044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-20.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	131.0	87.55	61.97	82.99	77.44	60.28	95.06	93.74	58.08
Merged-chr14-122181626-3	chr14	122181126	122182126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029556)	promoter-TSS (NM_029556)	-68.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	8.58	7.83	9.25	16.19	9.33	11.25	12.67	18.57	19.36
Merged-chr15-27664326-3	chr15	27663828	27664828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	17214.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	152.17	152.06	114.69	144.39	120.36	119.76	142.59	146.36	101.17
Merged-chr18-66468045-3	chr18	66467564	66468564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9460.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	114.98	107.36	128.57	157.21	103.56	94.85	134.14	129.55	95.55
Merged-chr1-53882704-3	chr1	53882217	53883217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33293.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	73.22	64.05	31.45	120.1	120.83	85.2	33.8	29.63	39.97
Merged-chr9-21002853-3	chr9	21002316	21003316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023167)	promoter-TSS (NM_023167)	79.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	173.33	158.51	131.34	135.62	151.62	168.8	151.03	173.33	84.94
Merged-chr18-54978859-3	chr18	54978376	54979376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	11304.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	95.53	82.48	45.32	64.77	41.99	28.13	49.64	57.48	34.35
Merged-chr10-120665918-3	chr10	120665413	120666413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99819.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	17.16	22.58	38.85	18.22	17.26	20.09	22.18	9.73	13.12
Merged-chr12-59130351-3	chr12	59129840	59130840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146034, intron 1 of 24)	intron (NM_146034, intron 1 of 24)	592.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	275.73	407.79	177.59	319.82	328.89	254.8	267.21	386.01	196.73
Merged-chr7-16250928-3	chr7	16250441	16251441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	URR1B|DNA|hAT-Charlie	-6787.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	45.76	40.09	40.7	68.15	49.45	57.87	34.85	37.14	31.85
Merged-chr1-172475325-3	chr1	172474827	172475827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029612)	promoter-TSS (NM_029612)	-33.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	60.64	52.07	57.35	59.38	30.32	39.39	70.76	88.43	44.34
Merged-chr1-138619686-2	chr1	138619181	138620181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	76.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	148.16	141.0	155.39	185.55	156.28	152.72	137.3	108.77	83.06
Merged-chr7-68739200-3	chr7	68738705	68739705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001042592, exon 8 of 8)	3' UTR (NM_001042592, exon 8 of 8)	10033.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	42.33	73.26	32.37	39.81	37.79	53.05	55.98	47.31	58.08
Merged-chr7-71872514-2	chr7	71872021	71873021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37174.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	11.44	15.67	22.2	8.77	16.79	16.08	2.11	0.44	1.25
Merged-chr11-87756683-3	chr11	87756177	87757177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029555)	promoter-TSS (NR_029555)	-187.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	246.56	224.4	181.29	225.36	170.28	177.64	270.38	253.8	197.35
Merged-chr4-32561903-3	chr4	32561399	32562399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 4 of 5)	non-coding (NR_026843, exon 4 of 5)	9763.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	92.1	89.39	89.72	103.23	132.49	120.57	81.33	82.24	65.58
Merged-chr9-108339209-3	chr9	108338717	108339717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001329528, exon 1 of 3)	5' UTR (NM_001329528, exon 1 of 3)	137.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	200.22	168.19	135.04	224.01	145.55	158.35	195.39	206.49	108.04
Merged-chr4-11454095-3	chr4	11453598	11454598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31860.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	53.77	48.84	28.67	28.34	31.26	26.53	50.7	55.27	31.85
Merged-chr14-61172890-3	chr14	61172402	61173402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172809, intron 2 of 9)	CpG	34445.0	NM_015788	50720.0	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik	sacsin	protein-coding	10.87	8.75	23.12	13.49	11.66	12.86	4.22	6.63	11.24
Merged-chr1-162570594-3	chr1	162570087	162571087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347125)	promoter-TSS (NM_001347125)	72.0	NM_001356526	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	379.27	268.18	287.66	368.4	282.7	339.2	328.47	320.13	212.96
Merged-chr3-97204073-3	chr3	97203572	97204572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029933, exon 10 of 10)	3' UTR (NM_029933, exon 10 of 10)	23292.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	52.06	51.61	56.42	63.42	44.78	21.7	63.37	55.71	40.59
Merged-chr2-127247818-3	chr2	127247316	127248316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	0.0	NM_025296	26371.0	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	255.71	211.96	147.07	236.83	213.66	157.54	227.08	210.91	99.3
Merged-chr6-89294810-3	chr6	89294326	89295326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9101.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	122.42	83.4	61.97	121.45	106.83	69.13	82.38	65.44	32.48
Merged-chr11-98786674-3	chr11	98786184	98787184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8832.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	228.82	134.09	86.95	194.32	85.84	124.59	201.73	211.36	101.8
Merged-chr14-121938849-3	chr14	121938332	121939332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-23058.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	126.42	134.09	50.87	120.77	90.5	45.82	55.98	65.88	27.48
Merged-chr5-67847513-3	chr5	67847004	67848004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009727)	promoter-TSS (NM_009727)	-73.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	168.18	105.52	109.14	153.16	91.44	99.67	146.81	125.58	85.56
Merged-chr6-88465378-3	chr6	88464872	88465872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019685)	promoter-TSS (NM_019685)	-37.0	NM_019685	56505.0	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	50.91	83.4	37.0	65.45	83.04	38.58	50.7	59.25	24.98
Merged-chr17-88441510-3	chr17	88440995	88441995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	CpG	791.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	248.84	274.63	260.84	264.49	273.84	276.5	266.16	233.91	158.01
Merged-chr5-31095521-3	chr5	31095015	31096015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347323, intron 1 of 8)	CpG	-1988.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	28.6	13.82	7.4	19.57	13.06	10.45	20.07	10.61	12.49
Merged-chr2-137815176-1	chr2	137814676	137815676	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-441408.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.86	3.69	6.47	2.02	2.33	8.04	4.22	3.98	6.25
Merged-chr1-43917059-3	chr1	43916583	43917583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16911.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	34.32	39.63	13.87	49.93	31.26	32.15	63.37	48.2	26.85
Merged-chr6-72347395-3	chr6	72346922	72347922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026696, exon 1 of 4)	exon (NM_026696, exon 1 of 4)	105.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	344.95	434.98	307.08	247.62	327.49	307.05	329.53	336.05	226.08
Merged-chr7-137411627-3	chr7	137411147	137412147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029886)	promoter-TSS (NM_029886)	-891.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	208.23	255.27	163.72	269.21	283.17	225.86	269.33	366.11	214.21
Merged-chr1-181860875-3	chr1	181860386	181861386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18485.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	111.55	84.78	106.37	53.3	26.12	58.68	85.55	83.57	71.82
Merged-chr17-53567561-3	chr17	53567045	53568045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020005, exon 1 of 18)	exon (NM_020005, exon 1 of 18)	574.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	135.58	110.13	170.19	114.7	70.44	117.35	147.87	101.7	104.92
Merged-chr2-136892112-3	chr2	136891613	136892613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-55.0	NM_028834	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	285.45	269.56	141.52	207.14	229.99	153.52	230.25	266.63	119.91
Merged-chr5-88721696-3	chr5	88721178	88722178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026735, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	807.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	62.93	35.94	54.57	64.77	45.72	73.95	63.37	47.31	58.08
Merged-chr10-66937300-3	chr10	66936805	66937805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16921.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	40.04	20.27	18.5	45.88	18.19	25.72	42.25	27.86	3.75
Merged-chr9-103181175-3	chr9	103180656	103181656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	20909.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	13.73	18.89	18.5	23.62	12.13	13.66	15.84	26.53	25.61
Merged-chr6-97149892-3	chr6	97149398	97150398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-1015.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	164.18	179.25	107.29	139.67	122.69	88.42	123.57	158.74	59.33
Merged-chr17-36262032-3	chr17	36261514	36262514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357889)	TTS (NM_001357889)	-4168.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	71.51	70.04	55.5	47.23	36.85	51.44	45.42	44.22	43.72
Merged-chr14-77854103-3	chr14	77853620	77854620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 2 of 5)	intron (NM_025384, intron 2 of 5)	20797.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	148.16	197.68	95.27	177.45	194.07	128.61	141.53	206.49	89.31
Merged-chr6-56714781-3	chr6	56714223	56715223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030235)	promoter-TSS (NM_030235)	-182.0	NM_030235	78937.0	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	183.63	150.68	138.74	165.31	147.88	136.64	160.54	175.1	89.93
Merged-chr7-73617277-3	chr7	73616788	73617788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58893.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	262.57	258.96	127.64	232.78	302.76	184.07	230.25	277.68	126.15
Merged-chr12-32857042-3	chr12	32856537	32857537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32921.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	59.49	52.53	59.2	72.19	74.64	90.02	77.1	72.96	63.7
Merged-chr19-34640808-3	chr19	34640316	34641316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008331)	promoter-TSS (NM_008331)	-73.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	113.27	114.27	75.85	82.32	63.91	90.02	121.46	153.87	83.06
Merged-chr18-69344387-3	chr18	69343894	69344894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013685)	promoter-TSS (NM_013685)	-98.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	68.65	58.06	61.97	86.36	74.64	57.87	96.11	76.49	39.97
Merged-chr10-128705074-3	chr10	128704571	128705571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016756)	promoter-TSS (NM_016756)	-20.0	NM_016756	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	131.57	111.51	149.84	119.43	96.57	143.88	134.14	122.04	93.68
Merged-chr4-135315453-3	chr4	135314951	135315951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	37763.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	211.66	183.85	119.32	151.14	107.3	102.88	95.06	121.15	76.82
Merged-chr12-100778498-3	chr12	100778014	100779014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-543.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	116.13	109.21	63.82	120.1	90.97	88.42	77.1	63.23	39.97
Merged-chr5-45857848-3	chr5	45857308	45858308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163073)	promoter-TSS (NM_001163073)	-268.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	145.3	152.52	113.77	158.56	152.55	180.85	153.15	167.14	99.92
Merged-chr4-119181626-3	chr4	119181120	119182120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013848, intron 8 of 12)	intron (NM_013848, intron 8 of 12)	-7425.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	11.44	16.13	13.87	11.47	7.0	12.06	23.24	26.09	14.36
Merged-chr1-33908031-3	chr1	33907549	33908549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276764)	promoter-TSS (NM_001276764)	-176.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	180.2	141.0	162.79	85.69	48.98	59.48	73.93	43.33	33.72
Merged-chr7-109959758-3	chr7	109959255	109960255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	667.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	299.76	258.04	240.49	256.39	191.73	228.28	224.97	221.97	126.78
Merged-chr3-95982352-2	chr3	95981846	95982846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-3164.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	122.42	120.73	79.55	85.69	77.44	81.18	12.67	7.07	11.24
Merged-chr5-145178719-3	chr5	145178228	145179228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	11515.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	136.72	152.98	146.14	131.57	111.03	155.13	167.93	153.43	113.66
Merged-chr4-32238630-3	chr4	32238113	32239113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-178822.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	85.81	58.52	56.42	104.58	66.71	66.71	45.42	23.88	23.73
Merged-chr2-39190830-3	chr2	39190319	39191319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178778)	promoter-TSS (NM_178778)	-89.0	NM_178778	320271.0	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	21.17	11.06	24.05	22.27	22.39	26.53	23.24	9.29	6.87
Merged-chr9-120118389-3	chr9	120117898	120118898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 3 of 6)	Tigger7|DNA|TcMar-Tigger	7999.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	45.76	35.02	57.35	37.11	29.39	22.51	36.97	46.87	26.23
Merged-chr10-117865837-1	chr10	117865337	117866337	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-19863.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	69.22	53.45	19.42	70.85	61.11	29.74	108.79	99.49	54.96
Merged-chr13-119428878-3	chr13	119428388	119429388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145457)	promoter-TSS (NM_145457)	-14.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	123.56	77.41	93.42	107.28	57.38	91.63	133.08	57.04	63.7
Merged-chr3-96104422-3	chr3	96103917	96104917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-110.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	113.84	88.47	74.92	89.06	68.11	52.25	140.47	129.55	64.33
Merged-chr7-80015557-3	chr7	80015067	80016067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9247.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	56.06	41.93	36.07	39.13	31.72	59.48	54.92	53.06	36.22
Merged-chr8-71537538-3	chr8	71537040	71538040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198095)	promoter-TSS (NM_198095)	-103.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	286.6	311.49	208.11	282.71	285.97	184.07	271.44	375.84	131.15
Merged-chr1-39900783-3	chr1	39900271	39901271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252201)	promoter-TSS (NM_001252201)	-142.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	23.45	16.13	22.2	35.76	8.86	8.04	40.14	10.61	12.49
Merged-chr5-109558632-3	chr5	109558108	109559108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310694, intron 1 of 7)	CpG	385.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	259.71	289.83	198.87	178.13	188.47	201.75	298.9	290.06	156.13
Merged-chr7-27336104-3	chr7	27335601	27336601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 1 of 32)	intron (NM_175641, intron 1 of 32)	1511.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	1.72	2.76	1.85	4.05	0.0	0.0	4.22	1.33	0.62
Merged-chr2-126675807-3	chr2	126675292	126676292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010249)	promoter-TSS (NM_010249)	-200.0	NR_073183	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	472.52	513.31	342.23	474.33	439.45	364.92	471.06	475.77	276.67
Merged-chr3-89861326-3	chr3	89860828	89861828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29958.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	52.63	49.76	20.35	55.33	49.92	34.56	49.64	44.66	50.59
Merged-chr17-17398868-3	chr17	17398358	17399358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3828.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	45.76	31.79	16.65	44.53	31.26	24.11	25.35	27.41	18.11
Merged-chr8-122443561-3	chr8	122443051	122444051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138656)	promoter-TSS (NM_138656)	-105.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	93.82	74.19	71.22	103.91	99.83	103.69	99.28	124.25	62.45
Merged-chr10-99460011-3	chr10	99459529	99460529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149142.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	149.31	144.23	37.0	143.71	119.43	128.61	117.24	126.9	84.94
Merged-chr8-26158768-3	chr8	26158272	26159272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199042, intron 1 of 2)	CpG	603.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	159.03	155.75	168.34	188.92	175.41	192.91	171.1	141.49	124.28
Merged-chr13-42073482-3	chr13	42072998	42073998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	21477.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	62.93	29.95	28.67	46.56	25.19	24.11	68.65	61.46	29.35
Merged-chr15-27937636-5	chr15	27937150	27938150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	88198.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	181.34	139.62	81.4	223.33	156.75	137.45	123.57	117.17	83.69
Merged-chr14-78849167-3	chr14	78848656	78849656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173758)	promoter-TSS (NM_173758)	-22.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	58.92	37.32	27.75	67.47	85.84	51.44	60.2	38.03	16.86
Merged-chr1-97319787-3	chr1	97319303	97320303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191500.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	18.88	23.04	3.7	33.06	48.52	17.68	32.74	30.95	13.12
Merged-chr1-55553588-3	chr1	55553090	55554090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	147644.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	38.9	36.86	23.12	60.05	62.98	36.17	21.12	23.43	19.36
Merged-chr19-37208316-3	chr19	37207838	37208838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	793.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	373.55	384.29	333.91	288.1	246.78	243.55	386.56	523.53	206.72
Merged-chr2-3284069-3	chr2	3283554	3284554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290370)	promoter-TSS (NM_001290370)	-158.0	NM_008708	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	66.36	50.69	52.72	72.87	76.97	57.87	60.2	48.64	50.59
Merged-chr7-145112607-3	chr7	145112097	145113097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95522.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	215.66	231.31	158.17	221.98	223.46	222.65	234.47	308.63	121.78
Merged-chr10-10476736-3	chr10	10476244	10477244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4430.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	57.21	54.37	30.52	48.58	32.66	34.56	51.75	65.44	39.97
Merged-chr13-20091396-3	chr13	20090966	20091966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	CpG	959.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	307.19	244.22	246.04	237.5	223.92	258.82	254.54	248.94	162.38
Merged-chr7-116620566-3	chr7	116620070	116621070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116201.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.29	6.45	9.25	9.45	2.8	6.43	4.22	2.21	3.12
Merged-chr1-153914060-3	chr1	153913586	153914586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14157.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	55.49	45.16	70.3	33.74	34.99	48.23	41.19	34.93	30.6
Merged-chr10-30674922-3	chr10	30674404	30675404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-19037.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	76.66	76.49	50.87	73.54	55.51	56.27	65.48	82.24	49.34
Merged-chr7-101302014-3	chr7	101301502	101302502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	86.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	434.76	360.33	239.56	412.25	330.29	233.9	351.71	302.0	151.76
Merged-chr5-24038392-3	chr5	24037865	24038865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7675.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	82.95	63.59	41.62	62.07	36.39	61.09	66.54	48.2	43.09
Merged-chr10-5806025-3	chr10	5805505	5806505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025995)	promoter-TSS (NM_025995)	-540.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	50.91	51.15	46.25	58.7	53.65	94.85	58.09	74.73	42.47
Merged-chr5-121660587-3	chr5	121660128	121661128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	65.0	NM_001289543	72399.0	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	169.33	132.25	95.27	199.04	141.82	98.87	186.94	139.72	78.07
Merged-chr11-104367958-3	chr11	104367442	104368442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	B1_Mm|SINE|Alu	74349.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	105.83	105.98	41.62	112.0	79.31	96.45	110.9	84.9	48.09
Merged-chr9-118606726-3	chr9	118606228	118607228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133721)	promoter-TSS (NM_133721)	19.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	110.41	90.31	122.09	149.79	97.97	145.49	143.64	81.36	83.69
Merged-chr5-31048383-5	chr5	31047896	31048896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177870)	promoter-TSS (NM_177870)	166.0	NM_001177621	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	344.38	311.03	220.14	345.46	313.96	287.76	297.84	320.57	160.5
Merged-chr13-74523070-3	chr13	74522543	74523543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29093.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	51.48	55.29	34.22	45.21	40.12	42.6	62.31	54.83	31.23
Merged-chr16-94569516-3	chr16	94569005	94570005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007890)	promoter-TSS (NM_007890)	-701.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	378.7	323.01	305.23	352.2	288.3	188.89	264.05	265.3	154.88
Merged-chr19-53303553-3	chr19	53303052	53304052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-6954.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	84.09	49.76	34.22	66.8	41.99	75.56	46.47	41.56	39.35
Merged-chr10-96459360-3	chr10	96458873	96459873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157628.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	38.9	23.04	3.7	39.81	23.33	16.88	47.53	22.11	15.61
Merged-chr9-42128173-3	chr9	42127669	42128669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3872.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	12.01	11.52	10.17	3.37	7.93	9.65	12.67	5.75	13.74
Merged-chr6-22356211-3	chr6	22355706	22356706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138587)	promoter-TSS (NM_138587)	-125.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	112.69	70.04	63.82	95.81	51.32	101.28	105.62	81.36	45.59
Merged-chr4-59366376-3	chr4	59365881	59366881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	72252.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	75.51	48.84	49.02	54.65	65.31	42.6	20.07	15.92	13.74
Merged-chr2-79060546-3	chr2	79060056	79061056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	190878.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	19.45	19.35	16.65	31.71	16.33	22.51	21.12	20.78	8.12
Merged-chr3-103860268-3	chr3	103859756	103860756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008979)	promoter-TSS (NM_008979)	-21.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	171.04	212.88	119.32	177.45	152.08	164.78	173.21	221.53	126.78
Merged-chr6-136449471-3	chr6	136448974	136449974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33905.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	34.32	40.55	44.4	32.39	30.79	28.94	49.64	47.31	34.97
Merged-chr3-10440071-3	chr3	10439594	10440594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029068)	promoter-TSS (NM_029068)	36.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	141.87	133.17	81.4	161.26	130.16	119.76	164.76	109.66	63.08
Merged-chr8-86623998-3	chr8	86623479	86624479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025827)	promoter-TSS (NM_025827)	-64.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	68.65	82.02	74.92	102.56	113.83	115.75	89.78	89.32	61.83
Merged-chr10-63339056-3	chr10	63338557	63339557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019812)	promoter-TSS (NM_019812)	-22.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	93.82	69.12	66.6	122.12	67.64	90.02	113.01	60.13	66.2
Merged-chr10-127594682-3	chr10	127594183	127595183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 8 of 88)	MIRc|SINE|MIR	26465.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	222.53	189.84	150.77	247.62	163.28	268.47	256.65	270.61	153.63
Merged-chr11-89081418-2	chr11	89080910	89081910	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	L2|LINE|L2	7569.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	7.44	4.61	1.85	24.96	16.79	13.66	12.67	10.17	11.24
Merged-chr4-43957394-3	chr4	43956898	43957898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027450)	promoter-TSS (NM_027450)	-304.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	24.6	11.98	12.02	17.54	7.0	8.84	9.51	7.96	9.99
Merged-chr2-90579675-3	chr2	90579171	90580171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	CpG	976.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	396.43	379.23	322.81	311.72	297.17	312.67	304.18	355.06	257.31
Merged-chr18-36482216-3	chr18	36481713	36482713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27718.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	56.06	48.38	8.32	67.47	27.99	32.96	15.84	4.42	8.12
Merged-chr11-96413989-1	chr11	96413489	96414489	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48231.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	2.86	1.38	5.55	19.57	13.53	24.92	3.17	4.42	5.0
Merged-chr19-6057898-3	chr19	6057470	6058470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160239)	promoter-TSS (NM_001160239)	3.0	NM_001190436	14109.0	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	253.99	229.01	201.64	240.87	226.26	158.35	172.16	179.52	163.0
Merged-chr14-52244569-3	chr14	52244061	52245061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6989.0	NM_201637	67772.0	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	90.38	79.25	98.05	70.17	54.11	101.28	74.99	68.09	79.32
Merged-chr5-21055423-3	chr5	21054924	21055924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	CpG	487.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	213.95	223.02	239.56	218.61	162.81	225.06	245.04	189.69	163.0
Merged-chr15-61983520-3	chr15	61983024	61984024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1817.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	22.31	29.03	12.95	20.92	16.79	32.15	15.84	26.53	9.37
Merged-chr10-128337652-3	chr10	128337147	128338147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026444)	promoter-TSS (NM_026444)	-80.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	174.48	181.09	169.27	162.61	133.42	173.62	137.3	165.81	115.54
Merged-chr4-46558869-3	chr4	46558342	46559342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	7598.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	184.2	120.26	102.67	214.56	104.5	143.88	120.41	115.85	77.44
Merged-chr1-65227869-3	chr1	65227376	65228376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	41191.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	34.32	31.79	24.05	35.09	26.59	32.96	25.35	38.03	33.72
Merged-chr10-13438609-3	chr10	13438107	13439107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	35789.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	20.02	17.51	25.9	27.66	10.73	22.51	9.51	11.94	6.25
Merged-chr19-24966427-3	chr19	24965930	24966930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4814.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	151.59	175.56	96.2	162.61	189.4	110.92	223.91	280.78	101.17
Merged-chr4-150914318-1	chr4	150913818	150914818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-4397.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	286.03	294.9	236.79	345.46	350.81	279.72	349.6	364.35	178.61
Merged-chr13-52565238-3	chr13	52564742	52565742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7983.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	108.12	102.75	64.75	113.35	101.7	74.75	121.46	97.72	83.06
Merged-chr3-7503449-3	chr3	7502939	7503939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173181)	promoter-TSS (NM_173181)	13.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	27.46	27.19	22.2	51.95	31.72	47.42	33.8	42.01	19.36
Merged-chr2-131171556-1	chr2	131171056	131172056	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027641, exon 7 of 7)	3' UTR (NM_027641, exon 7 of 7)	3254.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	1.14	1.84	1.85	17.54	18.66	28.94	1.06	4.86	2.5
Merged-chr1-78703117-3	chr1	78702629	78703629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033606, intron 12 of 14)	intron (NM_001033606, intron 12 of 14)	44689.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	40.04	41.93	40.7	64.1	48.05	62.7	7.39	7.52	6.87
Merged-chr5-135935034-3	chr5	135934535	135935535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	172.76	124.87	104.52	167.33	81.64	138.25	122.52	131.32	78.69
Merged-chr9-13827043-3	chr9	13826559	13827559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-6.0	NR_037622	74360.0	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	168.18	182.47	109.14	156.53	188.47	160.76	142.59	197.65	121.78
Merged-chr11-118211991-3	chr11	118211506	118212506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	736.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	271.15	177.4	108.22	298.9	202.46	167.19	171.1	153.87	88.68
Merged-chr2-167742701-3	chr2	167742191	167743191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	51514.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	37.76	25.34	49.95	43.86	18.19	18.49	46.47	38.03	26.85
Merged-chr8-98996177-3	chr8	98995675	98996675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15712.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	11.44	13.82	7.4	17.54	11.66	24.92	14.79	9.29	5.0
Merged-chr9-114688703-3	chr9	114688197	114689197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146229)	promoter-TSS (NM_146229)	-134.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	129.28	123.95	114.69	124.15	121.29	112.53	125.69	116.29	94.3
Merged-chr13-3548092-3	chr13	3547601	3548601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	MLTR11A|LTR|ERVK	10026.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	48.05	38.25	37.0	43.18	27.52	56.27	24.29	28.3	41.84
Merged-chr17-17625324-3	chr17	17624813	17625813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172827)	promoter-TSS (NM_172827)	-824.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	370.69	376.92	328.36	332.64	299.5	279.72	340.09	383.8	247.94
Merged-chr4-142079898-3	chr4	142079391	142080391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-4407.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	96.68	80.64	74.0	102.56	73.71	99.67	132.02	117.17	44.97
Merged-chr7-38061275-3	chr7	38060777	38061777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-41725.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	27.46	9.68	6.47	22.94	12.6	5.63	17.96	9.29	8.12
Merged-chr2-116975171-3	chr2	116974679	116975679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75027.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	243.12	273.25	143.37	252.34	188.94	164.78	222.86	254.25	148.64
Merged-chr14-21751369-3	chr14	21750853	21751853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359953)	promoter-TSS (NM_001359953)	-199.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	283.17	324.39	238.64	292.15	215.06	218.63	269.33	314.38	241.07
Merged-chr9-64242506-3	chr9	64242008	64243008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	MTC|LTR|ERVL-MaLR	7307.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	36.04	33.64	33.3	15.52	15.39	28.94	30.63	20.78	31.85
Merged-chr12-40223402-3	chr12	40222906	40223906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035459)	promoter-TSS (NR_035459)	42.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	359.25	282.92	184.99	435.19	410.53	205.77	318.97	358.6	161.13
Merged-chr9-25253097-3	chr9	25252592	25253592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001359738, exon 1 of 13)	5' UTR (NM_001359738, exon 1 of 13)	200.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	235.69	204.59	245.11	205.79	168.88	170.4	233.42	145.03	150.51
Merged-chr2-165982700-3	chr2	165982195	165983195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9942.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	320.92	282.46	178.52	277.98	181.01	194.52	247.15	317.92	148.64
Merged-chr18-34751642-3	chr18	34751141	34752141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009860)	promoter-TSS (NM_009860)	-108.0	NM_009860	12532.0	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	5.72	5.53	1.85	5.4	7.46	0.0	5.28	5.31	1.25
Merged-chr18-73572467-3	chr18	73571970	73572970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-235.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	252.28	200.9	148.92	239.52	179.14	173.62	205.96	168.47	142.39
Merged-chr5-102070031-3	chr5	102069553	102070553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-132.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	397.58	359.87	370.91	391.34	293.9	305.44	342.2	347.54	211.09
Merged-chr7-49778795-1	chr7	49778295	49779295	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133740, intron 2 of 15)	CpG-13170	437.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	72.65	50.69	40.7	65.45	69.98	65.11	66.54	34.05	42.47
Merged-chr7-144470758-3	chr7	144470255	144471255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007803, exon 1 of 18)	5' UTR (NM_007803, exon 1 of 18)	180.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	34.9	29.95	77.7	26.99	15.86	67.52	65.48	48.64	34.35
Merged-chr10-56795453-3	chr10	56794943	56795943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	363462.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	37.76	25.34	24.05	37.11	26.12	30.54	30.63	14.15	26.23
Merged-chr12-40557892-3	chr12	40557395	40558395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	111842.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	82.95	88.47	54.57	69.5	57.38	42.6	72.88	82.69	71.2
Merged-chr11-21370740-3	chr11	21370258	21371258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-129.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	175.05	136.85	123.02	197.02	142.75	182.46	182.72	149.89	111.79
Merged-chr2-157079319-3	chr2	157078807	157079807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164663)	promoter-TSS (NM_001164663)	-42.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	96.11	32.25	49.02	66.12	27.06	41.8	47.53	27.41	25.61
Merged-chr15-24589231-3	chr15	24588720	24589720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	824544.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	22.31	17.97	6.47	28.34	12.6	4.02	16.9	16.36	13.12
Merged-chr5-21785235-3	chr5	21784736	21785736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009584)	promoter-TSS (NM_009584)	-47.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	112.69	102.29	60.12	91.76	77.91	69.93	118.29	136.63	71.82
Merged-chr17-33550473-1	chr17	33549973	33550973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_172619, exon 22 of 25)	exon (NM_172619, exon 22 of 25)	-5234.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	117.27	79.25	37.0	0.0	1.87	1.61	2.11	0.0	1.25
Merged-chr1-20941561-2	chr1	20941062	20942062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10064.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	10.3	14.28	2.77	5.4	12.13	8.04	2.11	1.77	8.12
Merged-chr13-112666820-3	chr13	112666299	112667299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6033.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	98.97	114.74	96.2	86.36	64.84	44.21	142.59	168.91	86.81
Merged-chr10-122747689-3	chr10	122747182	122748182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	68367.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	62.35	58.52	52.72	70.85	52.72	59.48	95.06	112.31	53.08
Merged-chr16-38775576-3	chr16	38775066	38776066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178924, intron 7 of 7)	intron (NM_178924, intron 7 of 7)	24637.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	20.02	12.9	16.65	26.99	18.66	21.7	24.29	22.11	6.25
Merged-chr14-122009692-3	chr14	122009185	122010185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	ORR1D2|LTR|ERVL-MaLR	-24989.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	62.93	72.34	19.42	62.07	66.71	64.3	43.3	58.37	43.09
Merged-chr5-130171701-3	chr5	130171208	130172208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199059)	promoter-TSS (NM_001199059)	-111.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	491.39	356.19	332.06	449.36	404.93	280.52	380.23	333.84	197.98
Merged-chr8-22653404-3	chr8	22652933	22653933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011130)	promoter-TSS (NM_011130)	4.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	154.45	162.66	98.97	170.03	126.89	134.23	139.42	166.25	69.95
Merged-chrX-151521096-3	chrX	151520615	151521615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177201, exon 1 of 19)	5' UTR (NM_177201, exon 1 of 19)	443.0	NM_001113354	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	236.26	294.9	167.42	253.02	237.92	158.35	194.34	220.2	119.91
Merged-chr3-53017132-3	chr3	53016636	53017636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026225)	promoter-TSS (NM_026225)	87.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	67.5	68.2	47.17	62.07	52.72	56.27	76.05	61.02	28.73
Merged-chr11-26210213-3	chr11	26209734	26210734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	CpG	342.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	57.78	33.18	48.1	60.72	34.06	36.17	51.75	20.34	29.35
Merged-chr17-42887636-3	chr17	42887129	42888129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11205.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	50.91	58.98	52.72	32.39	27.52	54.66	55.98	77.38	38.1
Merged-chr19-7019457-3	chr19	7018966	7019966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153795)	promoter-TSS (NM_153795)	3.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	387.28	417.47	272.86	309.02	375.54	278.91	327.42	441.28	222.96
Merged-chr8-72135218-3	chr8	72134757	72135757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001491)	promoter-TSS (NM_001001491)	-35.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	62.93	45.62	44.4	85.01	80.71	65.91	33.8	15.92	18.74
Merged-chr8-70610853-3	chr8	70610354	70611354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2540.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	364.4	311.95	234.94	423.05	386.27	230.69	297.84	372.75	185.48
Merged-chr4-59380033-1	chr4	59379533	59380533	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 7 of 16)	intron (NM_001163288, intron 7 of 16)	58600.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	10.3	10.6	9.25	9.45	7.46	4.82	1.06	2.65	6.87
Merged-chr7-101933965-3	chr7	101933460	101934460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027053)	promoter-TSS (NM_027053)	-103.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	64.07	58.98	55.5	49.93	45.72	52.25	76.05	53.94	34.97
Merged-chr18-56432040-3	chr18	56431551	56432551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026240)	promoter-TSS (NM_026240)	-81.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	80.66	63.13	70.3	94.46	67.18	50.64	77.1	56.16	73.69
Merged-chr11-100622908-3	chr11	100622432	100623432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028024)	promoter-TSS (NM_028024)	-23.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	202.51	150.22	89.72	155.86	105.9	94.85	208.07	217.1	84.31
Merged-chr6-83008796-3	chr6	83008293	83009293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	24678.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	90.96	77.87	55.5	99.86	61.11	53.05	111.96	134.42	51.21
Merged-chr11-32911971-2	chr11	32911466	32912466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-87372.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	22.31	18.89	24.05	11.47	14.46	12.06	0.0	0.0	0.0
Merged-chr9-120826406-2	chr9	120825867	120826867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88883.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	166.47	145.15	79.55	174.75	151.15	103.69	5.28	0.0	3.12
Merged-chr4-117019430-3	chr4	117018933	117019933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355225)	promoter-TSS (NM_001355225)	31.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	21.17	15.67	11.1	31.04	22.39	22.51	17.96	22.55	13.12
Merged-chr1-161735014-3	chr1	161734495	161735495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53500.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	18.31	14.75	3.7	16.87	7.46	6.43	15.84	11.5	9.37
Merged-chr1-34011302-5	chr1	34010811	34011811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133833)	promoter-TSS (NM_133833)	-514.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	66.36	57.6	61.97	56.68	43.85	38.58	57.03	35.82	39.35
Merged-chr1-152531896-3	chr1	152531371	152532371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 13 of 17)	intron (NM_016846, intron 13 of 17)	93346.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	107.55	91.7	71.22	113.35	73.71	93.24	100.34	95.95	72.45
Merged-chr7-25282067-3	chr7	25281571	25282571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027882)	promoter-TSS (NM_027882)	-108.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	133.29	105.52	106.37	110.65	71.38	114.14	135.19	85.78	70.57
Merged-chr6-135188328-3	chr6	135187817	135188817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040296)	promoter-TSS (NR_040296)	-163.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	30.32	33.64	20.35	31.04	23.33	24.92	26.4	26.09	15.61
Merged-chrX-50635370-3	chrX	50634845	50635845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015505)	promoter-TSS (NR_015505)	-24.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	13.16	17.51	27.75	18.22	17.26	24.11	20.07	9.73	11.87
Merged-chr12-100022721-3	chr12	100022214	100023214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	58215.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	45.19	30.41	31.45	75.57	42.45	55.46	34.85	34.05	31.23
Merged-chr6-124818053-3	chr6	124817543	124818543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326594, intron 15 of 19)	intron (NM_001326594, intron 15 of 19)	-3747.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	19.45	11.52	15.72	17.54	10.26	40.19	14.79	15.48	21.23
Merged-chr13-67108699-3	chr13	67108193	67109193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	5335.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	120.7	134.09	67.52	85.01	116.63	104.49	123.57	107.45	53.08
Merged-chr18-74207846-3	chr18	74207328	74208328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-10.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	36.61	39.63	45.32	15.52	29.39	39.39	34.85	35.82	13.74
Merged-chr8-60890363-3	chr8	60889853	60890853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357270)	promoter-TSS (NM_001357270)	-40.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	35.47	27.19	18.5	57.35	29.86	50.64	44.36	30.07	18.74
Merged-chr1-186855719-2	chr1	186855215	186856215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106357.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	10.87	15.21	18.5	4.05	1.4	0.0	10.56	8.4	11.24
Merged-chr7-79935748-3	chr7	79935256	79936256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-492.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	157.89	112.43	32.37	140.34	129.22	62.7	63.37	53.94	30.6
Merged-chr4-156200882-3	chr4	156200392	156201392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015783)	promoter-TSS (NM_015783)	-74.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	245.98	280.16	134.12	183.52	185.2	129.41	207.01	279.01	124.91
Merged-chr19-41482730-3	chr19	41482237	41483237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42515.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	101.25	77.87	126.72	97.83	58.31	81.18	129.91	82.69	56.83
Merged-chr13-24761527-3	chr13	24761028	24762028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 1 of 6)	GC_rich|Low_complexity|Low_complexity	409.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	147.02	188.0	209.96	153.84	107.3	167.19	176.38	195.0	113.04
Merged-chr14-89746878-1	chr14	89746378	89747378	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149346.0	NR_002862	328451.0	Mm.320571	NR_002862		Gm5088	EG328451|Pabpc4l	poly(A)-binding protein, cytoplasmic pseudogene	pseudo	4.58	1.38	0.0	3.37	5.6	1.61	8.45	9.29	11.24
Merged-chr16-94370818-3	chr16	94370271	94371271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	32.0	NM_009441	22129.0	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	197.93	173.72	189.62	206.46	174.47	181.66	232.36	177.31	91.81
Merged-chr3-123335076-3	chr3	123334579	123335579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	50911.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	36.04	30.41	21.27	62.75	31.26	17.68	48.58	45.1	37.47
Merged-chr9-108567949-3	chr9	108567452	108568452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-367.0	NR_029577	387186.0		NR_029577	ENSMUSG00000105497	Mir191	Mirn191|mir-191|mmu-mir-191	microRNA 191	ncRNA	359.82	283.84	268.24	331.96	223.46	286.95	292.56	278.12	158.01
Merged-chr3-100969727-3	chr3	100969208	100970208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013026)	promoter-TSS (NM_001013026)	-45.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	10.87	12.44	26.82	12.14	13.53	24.92	27.46	13.27	6.25
Merged-chr11-116024429-5	chr11	116023916	116024916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008211)	promoter-TSS (NM_008211)	88.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	151.59	75.57	94.35	143.71	109.63	170.4	114.07	122.04	71.82
Merged-chr13-59656768-3	chr13	59656267	59657267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 3 of 9)	RMER15|LTR|ERVL	19017.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	4.0	4.15	5.55	8.77	4.2	4.82	7.39	2.21	9.37
Merged-chr13-56703675-3	chr13	56703147	56704147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164042)	promoter-TSS (NM_001164042)	-21.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	217.38	136.39	174.82	188.92	120.83	104.49	204.9	90.2	86.81
Merged-chr3-87376873-3	chr3	87376374	87377374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	487.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	55.49	29.95	20.35	43.18	27.06	31.35	143.64	197.65	107.42
Merged-chr3-158036587-3	chr3	158036076	158037076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289524)	promoter-TSS (NM_001289524)	63.0	NM_001093752	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	461.65	555.71	251.59	404.16	469.77	206.57	356.99	515.57	256.68
Merged-chr12-91765750-3	chr12	91765235	91766235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	20701.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	403.87	369.55	278.41	352.88	381.14	270.88	408.74	491.69	221.08
Merged-chr3-53463696-3	chr3	53463192	53464192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172501)	promoter-TSS (NM_172501)	-125.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	284.88	304.12	191.47	314.42	273.84	229.08	313.69	292.27	161.75
Merged-chr4-133132276-3	chr4	133131777	133132777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	1644.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	88.1	73.73	75.85	117.4	69.04	76.36	99.28	97.72	64.95
Merged-chr7-68830078-1	chr7	68829578	68830578	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80840.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	5.72	3.23	0.0	0.67	0.47	0.0	3.17	2.21	1.25
Merged-chr3-107333174-3	chr3	107332669	107333669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045807, exon 1 of 2)	5' UTR (NM_001045807, exon 1 of 2)	120.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	280.88	418.39	183.14	324.54	358.28	235.51	265.1	406.35	125.53
Merged-chr17-6655365-3	chr17	6654795	6655795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166630, intron 1 of 4).2	CpG	536.0	NM_001166630	100040563.0	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	389.57	492.58	301.53	307.67	386.27	303.83	264.05	361.25	177.37
Merged-chr14-63076514-3	chr14	63075953	63076953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21380.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	128.71	114.74	112.84	137.64	94.23	114.14	122.52	117.17	40.59
Merged-chr12-110498745-3	chr12	110498243	110499243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13004.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	29.17	23.96	27.75	54.65	31.72	57.87	44.36	45.1	26.23
Merged-chr15-85036995-3	chr15	85036486	85037486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133750)	promoter-TSS (NM_133750)	-76.0	NM_001356617	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	53.2	52.07	41.62	65.45	62.51	51.44	70.76	53.94	33.1
Merged-chr1-187215424-3	chr1	187214907	187215907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028848)	promoter-TSS (NM_028848)	39.0	NM_028848	74717.0	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	122.42	131.78	93.42	108.63	110.56	132.63	151.03	152.55	105.55
Merged-chr2-129592080-3	chr2	129591587	129592587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291020)	promoter-TSS (NM_001291020)	-752.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	352.39	348.81	184.07	355.58	281.3	274.9	291.51	418.73	186.11
Merged-chr6-108478303-2	chr6	108477808	108478808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-11435.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	105.83	129.94	50.87	118.75	115.69	110.92	6.34	11.5	5.0
Merged-chr5-25222937-3	chr5	25222456	25223456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144908)	promoter-TSS (NM_144908)	84.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	256.28	243.29	129.49	273.26	264.04	175.23	275.66	186.15	117.41
Merged-chr2-13574090-7	chr2	13573624	13574624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011701)	promoter-TSS (NM_011701)	-187.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	117.27	152.98	104.52	140.34	105.43	97.26	110.9	115.85	84.31
Merged-chr6-83632060-3	chr6	83631564	83632564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24052.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	145.87	134.09	94.35	170.03	122.23	176.03	129.91	165.37	84.94
Merged-chr3-61344257-3	chr3	61343754	61344754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20253.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	50.91	35.48	37.0	37.78	16.33	28.13	38.02	14.15	36.22
Merged-chrX-73008254-3	chrX	73007740	73008740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109043, intron 12 of 18)	intron (NM_001109043, intron 12 of 18)	16161.0	NR_035517	100316779.0		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	54.35	64.51	25.9	49.25	53.65	27.33	58.09	67.21	23.73
Merged-chr6-136805052-3	chr6	136804560	136805560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175652)	promoter-TSS (NM_175652)	-629.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	170.47	182.47	95.27	161.93	141.82	138.25	137.3	198.53	116.16
Merged-chr17-47766805-3	chr17	47766305	47767305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18939.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	117.27	133.63	64.75	172.05	172.61	174.42	228.14	198.98	101.8
Merged-chr16-32434297-3	chr16	32433799	32434799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163160, intron 1 of 8)	intron (NM_001163160, intron 1 of 8)	3069.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	34.9	30.87	8.32	41.16	31.72	26.53	76.05	45.1	21.86
Merged-chr9-120116240-3	chr9	120115737	120116737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144793, intron 1 of 6)	intron (NM_144793, intron 1 of 6)	5838.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	57.21	50.23	41.62	56.68	26.12	25.72	69.71	61.02	47.46
Merged-chr4-153957205-3	chr4	153956693	153957693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163019)	promoter-TSS (NM_001163019)	-44.0	NM_175287	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	194.5	200.44	172.97	196.34	221.13	164.78	168.99	156.09	114.29
Merged-chr16-17405895-3	chr16	17405390	17406390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023348)	promoter-TSS (NM_023348)	-110.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	141.87	142.38	144.29	178.8	163.28	162.37	162.65	156.97	76.82
Merged-chrM-3034-2	chrM	2532	3532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											233.97	225.32	25.9	140.34	34.06	18.49	97.17	49.08	34.35
Merged-chr6-148405866-1	chr6	148405366	148406366	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	38486.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	9.15	6.45	7.4	4.72	6.53	10.45	16.9	24.76	14.99
Merged-chr1-181138884-2	chr1	181138370	181139370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026171, intron 4 of 22)	intron (NM_026171, intron 4 of 22)	5334.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	34.9	28.57	25.9	8.77	8.4	14.47	41.19	29.63	23.73
Merged-chr7-67222539-3	chr7	67222040	67223040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175215)	promoter-TSS (NM_175215)	-4.0	NR_131043	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	68.07	54.37	26.82	47.9	31.26	57.87	57.03	51.29	26.85
Merged-chr2-170509001-3	chr2	170508488	170509488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-2242.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	8.58	4.15	0.0	10.12	7.0	4.82	11.62	3.1	3.75
Merged-chrX-13070865-4	chrX	13070388	13071388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009481)	promoter-TSS (NM_009481)	-610.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	203.65	144.23	120.24	230.75	128.29	133.43	190.11	203.84	94.93
Merged-chr11-117779594-3	chr11	117779091	117780091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	57.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	288.89	254.81	271.94	294.18	217.86	233.1	287.28	312.17	185.48
Merged-chr7-90068075-3	chr7	90067578	90068578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38919.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	56.63	47.92	32.37	64.77	42.92	50.64	27.46	34.93	26.85
Merged-chr1-171222610-3	chr1	171222099	171223099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-85.0	NM_001037170	641376.0	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	70.93	51.15	30.52	103.91	36.85	35.37	149.98	93.3	74.32
Merged-chr4-99715608-3	chr4	99715119	99716119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081264)	promoter-TSS (NM_001081264)	-11.0	NM_001081264	320438.0	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	30.32	33.64	23.12	46.56	41.99	36.97	57.03	40.68	31.23
Merged-chr4-41464373-1	chr4	41463873	41464873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	475.0	NM_024241	109242.0	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	102.97	129.94	85.1	89.06	90.5	100.47	92.94	120.71	59.95
Merged-chr8-71603177-2	chr8	71602689	71603689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166213, intron 8 of 14)	intron (NM_001166213, intron 8 of 14)	5543.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	20.59	7.83	9.25	2.02	2.33	0.0	13.73	9.29	8.74
Merged-chr7-127080257-3	chr7	127079762	127080762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11174.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	10.87	10.6	7.4	14.17	10.26	11.25	42.25	25.2	23.73
Merged-chr15-8512043-2	chr15	8511544	8512544	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67581.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	11.44	5.99	5.55	10.12	13.06	14.47	11.62	8.84	12.49
Merged-chr1-167349978-3	chr1	167349494	167350494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	3.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	200.79	177.86	156.32	219.28	239.32	214.61	203.84	199.42	96.8
Merged-chr11-77462512-3	chr11	77462005	77463005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1408.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	3.43	2.76	2.77	2.02	3.27	3.22	6.34	0.44	2.5
Merged-chr14-49894958-1	chr14	49894458	49895458	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146494, exon 2 of 2)	exon (NM_146494, exon 2 of 2)	6983.0	NM_146494	258487.0	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	4.0	2.3	3.7	2.02	2.8	4.82	13.73	18.57	23.11
Merged-chr15-81081496-3	chr15	81080969	81081969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	23578.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	102.97	57.14	31.45	134.27	78.84	69.93	96.11	76.05	28.1
Merged-chr5-122051671-3	chr5	122051188	122052188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1837.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	81.8	81.1	64.75	75.57	84.44	52.25	85.55	69.42	44.97
Merged-chr13-56181697-3	chr13	56181200	56182200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2815.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	95.53	83.86	86.95	91.09	71.84	90.02	82.38	75.17	63.7
Merged-chr3-90080287-3	chr3	90079769	90080769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	CpG	748.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	251.13	300.89	262.69	166.66	199.2	235.51	191.17	220.64	216.09
Merged-chr16-23314460-1	chr16	23313960	23314960	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L1_Mus3|LINE|L1	23990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	81.8	109.67	96.2	97.83	79.31	109.32	100.34	147.24	93.05
Merged-chrUn_JH584304-103551-1	chrUn_JH584304	103051	104051	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-43862.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	33.8	32.28	0.0
Merged-chr10-80158530-3	chr10	80158016	80159016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021565)	TTS (NM_021565)	8834.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	102.97	93.08	120.24	97.83	59.25	112.53	90.83	89.76	94.3
Merged-chr10-62556664-3	chr10	62556157	62557157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21800.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	81.8	66.81	53.65	74.22	52.72	89.22	68.65	96.39	43.72
Merged-chr6-82997914-3	chr6	82997414	82998414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	35557.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	231.68	219.79	167.42	205.79	185.67	169.6	201.73	269.28	128.65
Merged-chr14-59365493-3	chr14	59364985	59365985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199015)	promoter-TSS (NM_199015)	5.0	NM_199015	219132.0	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	76.08	107.82	85.1	80.97	72.31	75.56	83.44	105.24	64.33
Merged-chr6-108836384-3	chr6	108835879	108836879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	7738.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	39.47	39.63	62.9	47.9	24.72	27.33	42.25	43.77	29.98
Merged-chr11-100325209-3	chr11	100324659	100325659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5210.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	169.9	161.27	88.8	144.39	106.36	117.35	114.07	114.96	106.17
Merged-chr15-25441225-3	chr15	25440715	25441715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	27023.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	48.62	47.92	27.75	29.01	16.33	13.66	24.29	18.57	15.61
Merged-chr11-86587647-1	chr11	86587147	86588147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-3489.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	241.41	213.8	148.92	246.95	166.54	151.11	182.72	236.56	109.29
Merged-chr18-67258503-3	chr18	67257994	67258994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12664.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	38.9	41.01	24.97	31.04	20.06	21.7	46.47	43.77	28.73
Merged-chrUn_JH584304-68983-1	chrUn_JH584304	68483	69483	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-9294.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	21.12	30.95	0.0
Merged-chr10-51490865-3	chr10	51490357	51491357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013532)	promoter-TSS (NM_013532)	-41.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	291.75	256.66	142.44	316.44	271.97	208.98	282.0	307.31	139.27
Merged-chr19-55866407-3	chr19	55865908	55866908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-28913.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	38.9	29.95	35.15	58.7	32.19	37.78	26.4	33.6	21.23
Merged-chr7-90442794-3	chr7	90442326	90443326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	45.0	NR_073438	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	339.8	258.96	220.14	377.17	191.73	227.47	317.91	220.2	129.28
Merged-chr17-17394493-3	chr17	17393990	17394990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8196.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	78.37	82.48	67.52	85.69	41.99	34.56	59.15	53.94	39.97
Merged-chr17-65951184-3	chr17	65950658	65951658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023053)	promoter-TSS (NM_023053)	29.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	33.18	13.82	11.1	27.66	17.26	8.04	30.63	10.61	4.37
Merged-chr17-15705052-1	chr17	15704552	15705552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	85.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	471.37	333.61	272.86	398.76	245.38	208.18	337.98	215.78	157.38
Merged-chr6-96087164-1	chr6	96086664	96087664	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-25990.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	3.43	0.92	3.7	8.1	14.0	7.23	3.17	5.75	2.5
Merged-chr7-127851055-3	chr7	127850558	127851558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	9250.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	202.51	226.71	146.14	440.59	335.89	286.15	391.84	447.92	187.98
Merged-chr8-68590753-1	chr8	68590253	68591253	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 2 of 9)	intron (NM_172753, intron 2 of 9)	144393.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	1.72	1.84	7.4	2.7	2.8	1.61	8.45	9.29	5.0
Merged-chr10-31313476-3	chr10	31312968	31313968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027168)	promoter-TSS (NM_027168)	63.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	71.51	64.05	49.02	74.22	70.44	65.11	67.6	72.52	64.33
Merged-chr18-82976854-3	chr18	82976366	82977366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-56306.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	13.73	11.52	18.5	4.05	6.53	11.25	13.73	7.07	8.74
Merged-chr17-36032754-3	chr17	36032254	36033254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010398)	promoter-TSS (NM_010398)	-53.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	198.5	216.57	139.67	255.72	213.66	180.05	174.27	204.72	123.03
Merged-chr13-112344624-3	chr13	112344111	112345111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168405)	TTS (NM_001168405)	56093.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	53.2	61.75	53.65	82.32	41.05	46.62	97.17	78.26	57.46
Merged-chr11-22971993-3	chr11	22971489	22972489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011663)	promoter-TSS (NM_011663)	-16.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	119.56	187.08	62.9	103.91	149.75	65.11	55.98	96.39	61.2
Merged-chr16-10785622-3	chr16	10785124	10786124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-88.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	199.07	213.34	206.26	176.1	195.0	163.17	185.89	262.21	150.51
Merged-chr12-104186298-3	chr12	104185789	104186789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28165.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	59.49	38.71	43.47	66.8	54.11	42.6	44.36	59.25	29.35
Merged-chr4-133659634-3	chr4	133659145	133660145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13002.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	74.37	73.26	67.52	89.74	65.31	91.63	77.1	74.73	49.96
Merged-chr1-51480620-3	chr1	51480117	51481117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2218.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	34.9	45.16	31.45	43.86	43.39	50.64	38.02	46.43	36.85
Merged-chr16-92847966-3	chr16	92847475	92848475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21901.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	16.59	14.75	16.65	13.49	10.73	7.23	17.96	16.8	26.23
Merged-chr9-116099144-3	chr9	116098643	116099643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76220.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	62.93	65.43	40.7	66.8	55.98	94.04	16.9	22.99	18.11
Merged-chr3-30995494-1	chr3	30994994	30995994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008857)	promoter-TSS (NM_008857)	-277.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	97.25	84.32	52.72	96.48	92.84	77.97	111.96	112.31	60.58
Merged-chr9-61251893-3	chr9	61251396	61252396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41913.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	10.87	12.44	23.12	6.75	10.73	11.25	12.67	7.07	8.74
Merged-chr16-24426403-3	chr16	24425900	24426900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-21691.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	34.32	33.18	15.72	25.64	15.86	11.25	32.74	26.53	11.24
Merged-chr17-5190262-2	chr17	5189756	5190756	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	195182.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	157.31	124.87	104.52	148.44	144.15	164.78	142.59	151.66	88.68
Merged-chr7-46546667-3	chr7	46546186	46547186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 9 of 10)	MTE2a|LTR|ERVL-MaLR	93121.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	11.44	21.2	41.62	16.87	11.66	32.15	11.62	10.17	16.24
Merged-chrX-169036680-3	chrX	169036168	169037168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178754)	promoter-TSS (NM_178754)	57.0	NR_109847	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	9.72	6.45	9.25	11.47	6.53	0.0	1.06	1.77	2.5
Merged-chr19-46761433-3	chr19	46760943	46761943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033569)	promoter-TSS (NM_033569)	-166.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	211.09	205.97	163.72	217.93	273.37	221.04	230.25	204.72	124.91
Merged-chr9-20976807-3	chr9	20976315	20977315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010333)	promoter-TSS (NM_010333)	-22.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	137.86	153.44	161.87	133.59	129.22	105.3	148.92	148.57	59.33
Merged-chr4-148558545-3	chr4	148558098	148559098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355489)	promoter-TSS (NM_001355489)	-115.0	NM_001355489	50912.0	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	136.72	170.03	108.22	117.4	161.41	147.9	279.89	271.05	121.16
Merged-chr7-25706995-3	chr7	25706498	25707498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12055.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	177.91	147.91	130.42	153.84	153.01	171.21	199.62	210.47	98.05
Merged-chr2-3664316-3	chr2	3663799	3664799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49159.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	25.17	22.12	18.5	22.27	24.26	37.78	22.18	20.34	15.61
Merged-chr4-43559885-3	chr4	43559391	43560391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	2692.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	155.03	153.9	173.89	186.9	122.23	147.09	156.32	193.67	88.68
Merged-chr4-44756642-3	chr4	44756130	44757130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	71.0	NM_138590	319885.0	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	284.31	332.23	224.76	241.55	256.58	239.53	250.32	265.74	176.12
Merged-chr15-55381851-3	chr15	55381353	55382353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 11 of 47)	intron (NM_181277, intron 11 of 47)	74103.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	36.04	34.1	16.65	53.98	43.39	63.5	34.85	40.24	21.86
Merged-chr11-97187153-3	chr11	97186659	97187659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008379, intron 2 of 21)	CpG	733.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	75.51	47.0	75.85	64.77	48.52	64.3	68.65	56.6	46.84
Merged-chr15-100304213-3	chr15	100303714	100304714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-603.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	98.39	130.86	79.55	116.05	75.11	86.81	129.91	128.67	68.7
Merged-chr17-46496768-3	chr17	46496278	46497278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207161)	promoter-TSS (NM_207161)	-11.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	2.29	5.53	7.4	6.75	5.13	1.61	6.34	6.19	1.87
Merged-chr3-88526403-3	chr3	88525906	88526906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5989.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	5.15	2.76	0.0	7.42	0.47	1.61	4.22	3.98	0.0
Merged-chr8-77549432-3	chr8	77548970	77549970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081240)	promoter-TSS (NM_001081240)	73.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	206.51	158.51	149.84	178.8	144.62	136.64	171.1	158.3	91.81
Merged-chr8-126590260-3	chr8	126589772	126590772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	3164.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	218.52	228.55	157.24	233.45	243.05	151.92	237.64	264.86	107.42
Merged-chr4-141672495-3	chr4	141672008	141673008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8393.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	105.26	82.02	72.15	141.69	139.49	102.08	103.51	89.76	54.96
Merged-chr7-19562343-3	chr7	19561786	19562786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199149, exon 1 of 13)	5' UTR (NM_199149, exon 1 of 13)	112.0	NM_199149	232947.0	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	146.45	160.81	111.92	114.03	117.56	76.36	160.54	117.62	94.93
Merged-chr7-25703971-3	chr7	25703475	25704475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011577, intron 5 of 6)	intron (NM_011577, intron 5 of 6)	15078.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	116.13	106.44	134.12	120.1	94.7	132.63	103.51	107.45	96.18
Merged-chr10-99263160-3	chr10	99262659	99263659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-72.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	238.55	205.05	146.14	170.7	166.08	156.74	190.11	198.09	117.41
Merged-chr1-193201613-3	chr1	193201091	193202091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153137)	promoter-TSS (NM_153137)	-45.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	52.63	49.76	53.65	39.13	43.39	34.56	52.81	60.13	27.48
Merged-chr13-88459958-2	chr13	88459460	88460460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-361512.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	37.18	37.32	35.15	32.39	27.52	39.39	51.75	52.62	51.84
Merged-chrX-36795600-3	chrX	36795109	36796109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007451)	promoter-TSS (NM_007451)	12.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	139.58	158.97	136.89	174.08	178.21	129.41	153.15	189.69	116.79
Merged-chr18-56467371-3	chr18	56466875	56467875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	35243.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	33.18	42.85	24.97	37.78	33.59	76.36	52.81	45.1	33.72
Merged-chr6-114643151-3	chr6	114642666	114643666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028835)	promoter-TSS (NM_028835)	69.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	403.3	491.2	259.91	358.95	413.79	256.41	349.6	464.28	200.47
Merged-chr19-8774595-3	chr19	8774114	8775114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028418)	promoter-TSS (NR_028418)	129.0	NR_015538	100039957.0	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	415.88	416.55	344.08	314.42	381.6	283.74	348.54	294.48	227.33
Merged-chr10-83645209-3	chr10	83644709	83645709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145220, intron 1 of 20)	intron (NM_145220, intron 1 of 20)	3455.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	164.18	152.98	89.72	170.03	147.88	149.5	98.23	86.22	54.33
Merged-chr11-115187338-3	chr11	115186838	115187838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	-22.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	439.91	336.83	282.11	451.39	275.71	247.57	318.97	414.31	180.49
Merged-chr3-139042157-3	chr3	139041667	139042667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	33034.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	76.66	97.69	56.42	75.57	48.98	81.99	63.37	66.77	67.45
Merged-chr12-35983660-3	chr12	35983130	35984130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9295.0	NM_011783	23795.0	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	13.73	9.68	1.85	5.4	5.13	6.43	3.17	3.1	1.87
Merged-chr10-51455564-1	chr10	51455064	51456064	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25048.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	191.64	242.37	107.29	199.72	181.94	154.33	209.12	275.47	129.28
Merged-chr17-72918916-2	chr17	72918397	72919397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	592.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	178.48	196.29	164.64	192.29	248.65	201.75	193.28	215.34	151.14
Merged-chr7-141215775-3	chr7	141215264	141216264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025886)	promoter-TSS (NM_025886)	-96.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	16.02	6.45	2.77	18.89	2.8	11.25	5.28	4.42	5.62
Merged-chr9-25167620-3	chr9	25167126	25168126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15845.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	31.46	27.65	14.8	19.57	14.93	16.08	24.29	21.67	19.98
Merged-chr6-87546994-3	chr6	87546512	87547512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13753.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	70.36	50.69	50.87	81.64	39.19	29.74	88.72	114.96	41.22
Merged-chr4-129461461-3	chr4	129460957	129461957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133889)	promoter-TSS (NM_133889)	-222.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	131.57	84.32	85.1	130.9	72.78	51.44	97.17	80.47	56.83
Merged-chr16-97535126-3	chr16	97534637	97535637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-944.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	215.66	238.23	158.17	170.7	166.54	158.35	141.53	179.96	129.9
Merged-chr1-131053378-3	chr1	131052867	131053867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008551)	TTS (NM_008551)	33522.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	126.42	88.01	66.6	47.9	33.59	32.15	88.72	84.9	62.45
Merged-chr7-25250054-3	chr7	25249570	25250570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	688.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	294.04	276.01	227.54	228.73	194.53	229.88	251.37	294.04	189.23
Merged-chr7-55909754-3	chr7	55909259	55910259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	MLT1C|LTR|ERVL-MaLR	52734.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	94.96	137.31	83.25	97.16	59.71	93.24	115.12	127.79	75.57
Merged-chr13-14039604-3	chr13	14039107	14040107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130788)	promoter-TSS (NR_130788)	31.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	207.66	220.25	147.07	184.2	183.8	147.9	254.54	196.76	101.17
Merged-chr14-122983317-3	chr14	122982770	122983770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360598)	promoter-TSS (NM_001360598)	13.0	NM_001360598	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	68.07	82.48	63.82	90.41	93.77	79.58	86.61	74.73	39.97
Merged-chrX-98860391-3	chrX	98859876	98860876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313755, intron 2 of 23)	intron (NM_001313755, intron 2 of 23)	30649.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	6.86	3.69	5.55	10.8	3.27	4.82	1.06	5.75	3.75
Merged-chrX-20701516-3	chrX	20701008	20702008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_001358931	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	22.88	17.97	10.17	14.17	15.86	21.7	19.01	21.67	22.48
Merged-chr1-194995401-3	chr1	194994902	194995902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18443.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	133.86	134.55	113.77	168.68	127.36	128.61	158.43	139.72	86.18
Merged-chr1-171366097-1	chr1	171365597	171366597	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4076.0	NM_027893	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	4.0	0.46	0.0	1.35	3.73	6.43	20.07	14.15	19.98
Merged-chr4-133756878-3	chr4	133756391	133757391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3280.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	140.73	185.7	143.37	130.9	147.42	136.64	127.8	136.63	105.55
Merged-chr12-80832406-3	chr12	80831929	80832929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	41897.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	144.73	141.92	71.22	136.29	104.5	81.18	138.36	225.51	65.58
Merged-chr18-35498901-3	chr18	35498337	35499337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030749)	promoter-TSS (NM_030749)	88.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	248.84	224.86	171.12	238.18	278.51	192.11	260.88	218.43	107.42
Merged-chr6-54941343-3	chr6	54940843	54941843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 4 of 11)	RLTR28|LTR|ERVL	30318.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	57.78	39.63	55.5	30.36	25.66	39.39	48.58	45.99	36.22
Merged-chr16-57559150-1	chr16	57558650	57559650	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9908.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	62.35	93.08	39.77	82.32	49.92	35.37	53.87	39.8	22.48
Merged-chr15-80445111-1	chr15	80444611	80445611	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6508.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	6.29	4.61	5.55	2.7	6.53	1.61	38.02	22.55	13.74
Merged-chr14-118831666-1	chr14	118831166	118832166	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	-23284.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	4.58	2.3	0.0	4.05	3.27	0.0	2.11	6.19	3.12
Merged-chr19-3708244-3	chr19	3707748	3708748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358258)	promoter-TSS (NM_001358258)	-45.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	118.99	87.55	43.47	116.05	89.1	94.04	109.84	104.79	47.46
Merged-chr7-98815333-3	chr7	98814837	98815837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19775.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	106.4	86.17	82.32	114.7	104.5	86.01	94.0	153.43	76.82
Merged-chr7-27330996-3	chr7	27330485	27331485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	CpG	2663.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	2.29	4.15	3.7	3.37	3.27	4.82	4.22	4.86	8.12
Merged-chr5-121197589-3	chr5	121197096	121198096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	33.75	41.47	60.12	22.27	24.72	20.09	33.8	30.95	34.97
Merged-chr7-101504738-3	chr7	101504234	101505234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001143849, exon 17 of 30)	exon (NM_001143849, exon 17 of 30)	29358.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	12.01	5.07	3.7	8.1	6.06	8.04	13.73	7.52	3.75
Merged-chr4-48473447-3	chr4	48472938	48473938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355741)	promoter-TSS (NM_001355741)	25.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	109.26	110.13	85.1	101.88	104.5	66.71	123.57	98.16	59.95
Merged-chr12-79642907-3	chr12	79642400	79643400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	281833.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	131.0	130.86	89.72	120.77	65.31	110.12	90.83	112.75	63.08
Merged-chr10-13301227-3	chr10	13300719	13301719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	MIR|SINE|MIR	23070.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	152.74	166.34	116.54	197.69	143.22	138.25	183.78	240.54	110.54
Merged-chr7-101549438-2	chr7	101548938	101549938	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	6364.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	145.3	116.12	136.89	159.23	77.44	104.49	254.54	268.84	119.28
Merged-chr2-24935308-3	chr2	24934796	24935796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162485)	promoter-TSS (NM_001162485)	-15.0	NM_178408	215705.0	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	61.21	52.99	59.2	95.14	69.98	91.63	81.33	74.28	64.33
Merged-chr8-122407844-3	chr8	122407363	122408363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029993, intron 10 of 18)	intron (NM_001029993, intron 10 of 18)	-14157.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	56.06	35.48	39.77	58.03	41.05	45.01	33.8	23.88	23.73
Merged-chr5-137533211-3	chr5	137532684	137533684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010312, exon 1 of 10)	5' UTR (NM_010312, exon 1 of 10)	122.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	151.02	125.79	126.72	118.08	77.91	127.8	133.08	149.89	108.67
Merged-chr3-137952416-3	chr3	137951910	137952910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	29139.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	156.74	86.63	91.57	175.43	76.04	131.02	168.99	141.49	93.05
Merged-chr4-14826576-3	chr4	14826088	14827088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152812)	promoter-TSS (NM_152812)	-1.0	NM_152812	72201.0	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	60.07	82.48	49.02	52.63	71.38	64.3	96.11	91.97	78.69
Merged-chr4-45018614-3	chr4	45018158	45019158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285800)	promoter-TSS (NM_001285800)	49.0	NM_001285800	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	25.74	15.21	13.87	26.31	18.66	30.54	27.46	21.22	13.74
Merged-chr6-8509832-3	chr6	8509340	8510340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040452)	promoter-TSS (NR_040452)	240.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	271.15	164.04	163.72	248.97	130.62	165.58	218.63	108.33	113.04
Merged-chr6-124738667-3	chr6	124738163	124739163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077705)	promoter-TSS (NM_001077705)	46.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	88.1	70.96	72.15	69.5	52.25	83.59	94.0	99.49	76.19
Merged-chr17-31512253-3	chr17	31511735	31512735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021322, exon 1 of 11)	exon (NM_021322, exon 1 of 11)	252.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	112.12	114.74	141.52	109.98	107.3	165.58	136.25	112.75	88.68
Merged-chr10-80665740-1	chr10	80665240	80666240	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-8669.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	18.31	19.35	12.02	24.29	14.0	23.31	19.01	16.36	10.62
Merged-chr17-74430689-3	chr17	74430195	74431195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 8 of 8)	MLT1J|LTR|ERVL-MaLR	28413.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	93.82	84.78	68.45	119.43	114.76	106.9	89.78	103.47	41.84
Merged-chr16-21628415-1	chr16	21627915	21628915	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	66250.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	14.87	11.52	16.65	29.01	22.39	13.66	6.34	2.65	7.49
Merged-chr17-24549919-3	chr17	24549409	24550409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-41.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	178.48	150.68	157.24	178.13	146.95	127.8	191.17	162.28	121.16
Merged-chr2-75777331-3	chr2	75776805	75777805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54872.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	100.68	70.96	65.67	103.91	73.71	69.93	144.7	146.8	99.92
Merged-chr18-24530240-3	chr18	24529729	24530729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144861)	promoter-TSS (NM_144861)	-25.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	68.07	52.99	53.65	70.17	76.51	48.23	83.44	66.77	57.46
Merged-chrX-155584798-3	chrX	155584303	155585303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093750, intron 2 of 2)	intron (NM_001093750, intron 2 of 2)	38524.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	21.74	33.64	13.87	33.74	23.33	20.09	31.69	41.12	26.23
Merged-chr1-155146841-3	chr1	155146341	155147341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-27.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	135.58	165.42	86.95	112.0	148.35	106.1	141.53	182.17	92.43
Merged-chr11-44496298-1	chr11	44495798	44496798	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22666.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	5.15	4.61	12.95	9.45	13.06	6.43	51.75	42.89	47.46
Merged-chr8-95853486-3	chr8	95852981	95853981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172758)	promoter-TSS (NM_172758)	10.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	127.57	171.41	123.94	165.98	215.53	123.78	148.92	191.02	104.92
Merged-chr6-108165113-3	chr6	108164592	108165592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20491.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	48.05	41.47	18.5	25.64	23.79	31.35	78.16	68.09	19.98
Merged-chr3-105892042-3	chr3	105891532	105892532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-12389.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	161.32	157.59	114.69	162.61	133.42	155.13	175.33	211.8	100.55
Merged-chr1-87854682-1	chr1	87854182	87855182	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_136921)	promoter-TSS (NR_136921)	-383.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	22.88	21.2	22.2	24.96	31.26	24.11	17.96	17.24	12.49
Merged-chr19-5964227-3	chr19	5963725	5964725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008893)	promoter-TSS (NM_008893)	-19.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	241.98	187.54	197.02	265.84	252.38	182.46	239.75	251.59	83.69
Merged-chr2-122611276-3	chr2	122610740	122611740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025961)	promoter-TSS (NM_025961)	37.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	203.65	294.9	202.56	240.2	285.04	244.35	208.07	305.1	111.79
Merged-chr2-155692290-3	chr2	155691749	155692749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163452, exon 1 of 19)	exon (NM_001163452, exon 1 of 19)	135.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	153.88	144.23	105.44	166.66	135.29	144.68	165.82	121.6	89.93
Merged-chr9-40319029-2	chr9	40318524	40319524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2299.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	67.5	48.84	32.37	42.51	33.12	10.45	12.67	11.05	6.87
Merged-chr5-113835200-3	chr5	113834705	113835705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4704.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	40.04	18.43	27.75	34.41	29.86	40.99	24.29	35.37	23.11
Merged-chr14-79532536-3	chr14	79532055	79533055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	16881.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	102.4	132.25	73.07	122.8	74.64	92.44	78.16	117.17	52.46
Merged-chr6-99490063-3	chr6	99489550	99490550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	30943.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	18.31	23.5	18.5	29.69	17.26	9.65	21.12	22.55	18.11
Merged-chr4-53150714-3	chr4	53150245	53151245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	9150.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	153.88	175.1	79.55	190.95	188.0	140.66	192.23	224.62	101.17
Merged-chr11-46287001-3	chr11	46286519	46287519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 3 of 30)	intron (NM_001252459, intron 3 of 30)	25339.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	22.88	11.52	16.65	18.89	14.46	20.9	27.46	23.43	2.5
Merged-chr8-125054682-3	chr8	125054155	125055155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	CpG	460.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	142.44	122.11	101.74	168.68	120.83	143.88	123.57	150.34	81.19
Merged-chr2-154372696-3	chr2	154372214	154373214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025876)	promoter-TSS (NM_025876)	5.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	86.95	94.92	62.9	132.92	111.03	105.3	118.29	119.83	67.45
Merged-chr8-11458386-3	chr8	11457936	11458936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	MIR|SINE|MIR	-19493.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	313.49	301.81	184.07	343.43	247.72	200.14	292.56	344.45	126.15
Merged-chr15-78935037-3	chr15	78934533	78935533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133800)	promoter-TSS (NM_133800)	100.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	48.05	30.41	54.57	34.41	35.92	56.27	52.81	31.39	26.23
Merged-chr1-118459112-3	chr1	118458617	118459617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027901, exon 1 of 1)	non-coding (NR_027901, exon 1 of 1)	148.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	112.69	108.75	63.82	116.73	143.68	61.89	141.53	106.12	46.84
Merged-chr17-57285170-3	chr17	57284661	57285661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	6061.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	142.44	139.16	127.64	126.85	104.5	134.23	132.02	147.24	95.55
Merged-chr15-103272735-3	chr15	103272220	103273220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357748)	promoter-TSS (NM_001357748)	-168.0	NM_019817	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	146.45	106.44	49.02	95.14	55.98	58.68	135.19	87.11	54.33
Merged-chr6-85306706-1	chr6	85306206	85307206	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178639, intron 2 of 13)	MTD|LTR|ERVL-MaLR	26716.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	7.44	11.52	11.1	12.82	14.0	9.65	5.28	8.84	4.37
Merged-chr11-3202475-3	chr11	3201965	3202965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166547)	promoter-TSS (NM_001166547)	112.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	168.18	156.67	179.44	132.92	144.62	172.81	194.34	150.34	95.55
Merged-chr10-13965711-3	chr10	13965258	13966258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010437)	promoter-TSS (NM_010437)	-317.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	395.86	346.05	306.16	452.74	320.02	298.21	378.11	449.68	214.84
Merged-chr7-24608291-3	chr7	24607795	24608795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023154, intron 6 of 7)	intron (NM_023154, intron 6 of 7)	-3033.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	5.15	8.29	3.7	3.37	6.06	5.63	13.73	4.42	8.12
Merged-chr9-82829965-3	chr9	82829473	82830473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022986, exon 1 of 4)	5' UTR (NM_022986, exon 1 of 4)	167.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	86.38	71.88	30.52	117.4	100.3	42.6	80.27	72.07	34.97
Merged-chr19-14586253-3	chr19	14585767	14586767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	10946.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	157.31	177.86	95.27	156.53	92.37	83.59	155.26	204.28	107.42
Merged-chr16-90043075-3	chr16	90042558	90043558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68359.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	33.75	14.75	6.47	39.13	14.46	14.47	11.62	8.84	3.12
Merged-chr2-131210401-3	chr2	131209879	131210879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291032)	promoter-TSS (NM_001291032)	19.0	NR_110992	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	439.91	443.74	295.06	439.24	406.33	303.83	397.13	552.71	241.69
Merged-chr7-100950683-3	chr7	100950189	100951189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	L2|LINE|L2	13677.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	115.55	106.44	62.9	97.16	61.58	78.77	79.21	80.03	50.59
Merged-chr3-68709478-3	chr3	68708948	68709948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18024.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	17.73	24.42	5.55	26.99	16.33	16.08	26.4	31.39	9.99
Merged-chr10-75517391-3	chr10	75516908	75517908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175133)	promoter-TSS (NM_175133)	-27.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	278.02	312.87	204.41	268.54	233.72	258.02	303.13	341.8	148.64
Merged-chr11-103027015-3	chr11	103026517	103027517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1526.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	275.16	257.58	158.17	280.68	248.65	200.14	237.64	357.71	128.03
Merged-chr15-99875532-3	chr15	99875024	99876024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113545)	promoter-TSS (NM_001113545)	-68.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	82.95	128.56	61.05	87.71	101.7	71.54	101.39	117.62	58.71
Merged-chr9-108517299-5	chr9	108516761	108517761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175143, intron 1 of 9)	CpG	174.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	327.79	281.08	262.69	322.51	242.12	259.62	260.88	232.14	187.36
Merged-chr2-49744464-3	chr2	49744003	49745003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 20 of 25)	intron (NM_008449, intron 20 of 25)	-43183.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	212.8	205.97	132.27	160.58	151.62	116.55	175.33	262.21	112.42
Merged-chr1-134788387-1	chr1	134787887	134788887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	15334.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	17.16	11.98	7.4	4.05	4.67	0.0	1.06	4.42	3.75
Merged-chr9-106372025-3	chr9	106371530	106372530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	3398.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	44.62	27.65	35.15	26.31	31.26	27.33	35.91	46.43	39.35
Merged-chr10-39435015-4	chr10	39434540	39435540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	65241.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	54.35	39.63	43.47	58.03	42.45	40.19	52.81	35.82	42.47
Merged-chr11-87423025-3	chr11	87422515	87423515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	U1|snRNA|snRNA	-4576.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	284.31	303.2	132.27	234.13	222.06	138.25	198.56	303.77	70.57
Merged-chr11-8630038-3	chr11	8629543	8630543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	34492.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	51.48	35.48	88.8	55.33	34.99	81.99	52.81	38.91	49.96
Merged-chr4-150061041-3	chr4	150060535	150061535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7419.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	33.75	17.97	5.55	64.1	81.17	79.58	10.56	6.19	8.12
Merged-chr16-90283022-3	chr16	90282476	90283476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	1510.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	163.61	161.74	64.75	163.28	136.22	81.18	116.18	156.09	83.06
Merged-chr9-21528087-3	chr9	21527571	21528571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198794, intron 1 of 6)	L2b|LINE|L2	1894.0	NM_206536	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	128.71	65.89	76.77	115.38	65.31	90.02	175.33	161.83	59.33
Merged-chr1-180888866-3	chr1	180888383	180889383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4225.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	53.2	40.09	25.9	36.43	28.46	38.58	33.8	35.37	32.48
Merged-chr9-44344005-3	chr9	44343489	44344489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013551, intron 1 of 13)	CpG	239.0	NM_013551	15288.0	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	271.73	229.47	149.84	266.51	193.13	189.69	230.25	193.67	130.53
Merged-chr3-58415302-3	chr3	58414787	58415787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081229, exon 1 of 4)	5' UTR (NM_001081229, exon 1 of 4)	567.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	389.0	375.08	337.61	365.7	340.55	325.53	337.98	276.35	223.58
Merged-chr10-127668907-3	chr10	127668434	127669434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045171)	TTS (NR_045171)	1811.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	97.25	86.17	86.95	93.79	51.78	65.11	102.45	133.53	99.92
Merged-chr11-104001172-3	chr11	104000695	104001695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34324.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	66.36	52.53	35.15	58.03	48.52	43.4	42.25	39.35	39.97
Merged-chr16-30390067-5	chr16	30389545	30390545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1515.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	290.6	284.3	231.24	260.44	215.06	174.42	295.73	340.03	153.01
Merged-chr8-111821318-3	chr8	111820829	111821829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011801, intron 5 of 6)	intron (NM_011801, intron 5 of 6)	32981.0	NM_011801	23837.0	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	5.72	5.07	7.4	11.47	5.6	4.82	8.45	3.98	7.49
Merged-chr13-96548092-3	chr13	96547586	96548586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 1 of 17)	intron (NM_023420, intron 1 of 17)	5351.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	54.35	71.88	38.85	35.76	44.32	18.49	49.64	49.52	31.85
Merged-chr4-88722406-4	chr4	88721888	88722888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172871, exon 1 of 1)	5' UTR (NM_172871, exon 1 of 1)	120.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	343.8	370.01	184.99	302.95	294.37	206.57	266.16	271.49	168.62
Merged-chr16-4541958-3	chr16	4541455	4542455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	17765.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	24.03	25.34	38.85	33.74	21.93	22.51	32.74	30.07	18.11
Merged-chr3-86774719-3	chr3	86774175	86775175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077688, intron 54 of 54)	Tigger6a|DNA|TcMar-Tigger	146209.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	22.88	12.44	9.25	8.77	7.46	0.0	4.22	6.19	3.12
Merged-chr11-70945484-3	chr11	70944991	70945991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083331, intron 10 of 16)	intron (NM_001083331, intron 10 of 16)	24482.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	62.93	78.33	52.72	58.7	48.05	53.05	63.37	85.34	35.6
Merged-chr19-46483150-3	chr19	46482671	46483671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-18477.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	115.55	85.71	60.12	97.83	76.51	99.67	117.24	100.37	73.07
Merged-chr16-31275250-3	chr16	31274759	31275759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025800)	promoter-TSS (NM_025800)	18.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	188.78	166.8	119.32	152.49	157.68	150.31	154.2	119.83	97.43
Merged-chr8-126945906-3	chr8	126945401	126946401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024214)	promoter-TSS (NM_024214)	20.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	229.39	190.3	113.77	265.16	222.99	167.99	222.86	224.62	114.29
Merged-chr6-146617162-1	chr6	146616662	146617662	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 6 of 11)	L1MC4|LINE|L1	17430.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	33.75	28.57	18.5	61.4	48.98	40.99	4.22	3.98	3.12
Merged-chr10-44602300-3	chr10	44601822	44602822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143574.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	80.09	83.4	74.0	101.21	61.11	77.97	85.55	80.03	63.08
Merged-chr5-64810086-3	chr5	64809574	64810574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6551.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	228.25	217.03	136.89	230.75	191.73	188.09	218.63	246.73	97.43
Merged-chr13-52615247-3	chr13	52614769	52615769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	18387.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	127.57	130.4	97.12	242.9	194.07	180.85	176.38	140.17	61.2
Merged-chr13-59875866-3	chr13	59875368	59876368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52721.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	139.01	145.15	89.72	138.32	115.69	136.64	193.28	204.72	121.16
Merged-chr11-59221743-3	chr11	59221173	59222173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	6489.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	34.32	56.68	49.95	53.3	22.39	41.8	58.09	57.92	40.59
Merged-chr12-86824275-3	chr12	86823716	86824716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60598.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	77.23	61.75	52.72	75.57	59.25	62.7	79.21	54.83	36.85
Merged-chr16-56075435-3	chr16	56074922	56075922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025483)	promoter-TSS (NM_025483)	18.0	NM_001003973	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	140.73	137.77	109.14	136.97	97.03	118.16	136.25	110.98	76.82
Merged-chr15-99030121-4	chr15	99029583	99030583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009448, exon 1 of 4)	5' UTR (NM_009448, exon 1 of 4)	192.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	388.42	316.1	234.94	414.95	277.11	239.53	327.42	363.02	172.37
Merged-chr9-75434695-3	chr9	75434189	75435189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	193.35	186.62	130.42	217.93	171.68	168.8	198.56	272.82	109.29
Merged-chr3-51340768-3	chr3	51340270	51341270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-126.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	409.59	326.24	376.46	404.16	251.45	311.07	337.98	252.04	204.22
Merged-chr10-123196437-3	chr10	123195905	123196905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301628, intron 1 of 20)	CpG	614.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	114.41	101.83	113.77	84.34	102.63	114.14	123.57	101.26	90.56
Merged-chr10-80578602-3	chr10	80578115	80579115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1319.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	42.33	29.03	74.92	35.76	39.19	60.28	51.75	57.04	42.47
Merged-chr3-89796520-3	chr3	89795997	89796997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	22888.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	187.06	157.13	120.24	184.2	187.07	139.06	157.37	225.95	102.42
Merged-chr9-109057676-3	chr9	109057177	109058177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011637)	TTS (NM_011637)	1574.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	153.88	183.85	142.44	111.33	93.3	107.71	117.24	191.02	125.53
Merged-chr10-30655828-3	chr10	30655332	30656332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111267)	promoter-TSS (NM_001111267)	35.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	95.53	95.38	70.3	83.66	58.78	65.91	105.62	117.62	46.22
Merged-chr13-113418320-3	chr13	113417817	113418817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84527.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	159.6	125.33	87.87	114.03	91.44	94.85	86.61	99.49	77.44
Merged-chr7-73572758-3	chr7	73572261	73573261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	13.73	23.04	4.62	18.22	11.2	7.23	7.39	8.84	8.74
Merged-chr17-6747062-3	chr17	6746578	6747578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 7 of 12)	intron (NM_009510, intron 7 of 12)	35702.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	146.45	112.43	39.77	165.98	106.36	57.07	90.83	77.38	51.84
Merged-chr6-125360225-3	chr6	125359700	125360700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 5 of 9)	ID_B1|SINE|B4	10477.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	25.74	19.35	28.67	21.59	18.66	25.72	46.47	50.85	19.36
Merged-chr1-89742589-3	chr1	89742105	89743105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 10 of 16)	ORR1E|LTR|ERVL-MaLR	-58713.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	8.01	10.14	4.62	8.77	7.0	16.08	8.45	8.84	9.37
Merged-chr6-135228518-3	chr6	135228015	135229015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028982, exon 10 of 13)	exon (NM_028982, exon 10 of 13)	19369.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	21.17	9.68	18.5	35.76	9.8	9.65	31.69	27.41	24.98
Merged-chrX-113185444-3	chrX	113184922	113185922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018818)	promoter-TSS (NM_018818)	93.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	81.8	90.31	54.57	89.06	75.11	44.21	91.89	84.9	25.61
Merged-chr16-18089237-3	chr16	18088804	18089804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011172)	promoter-TSS (NM_011172)	-114.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	13.16	14.75	18.5	20.24	17.73	30.54	21.12	20.34	13.74
Merged-chr18-40308212-3	chr18	40307696	40308696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	49835.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	40.04	73.73	71.22	71.52	108.23	124.59	41.19	34.05	49.96
Merged-chr19-16122546-3	chr19	16122064	16123064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-10267.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	76.08	86.17	57.35	42.51	40.59	53.05	109.84	104.79	65.58
Merged-chr8-107096546-3	chr8	107096065	107097065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286200)	promoter-TSS (NM_001286200)	-20.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	236.26	181.55	196.09	163.28	156.28	176.83	208.07	159.18	109.29
Merged-chr15-96638325-3	chr15	96637829	96638829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	3633.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	201.36	151.6	112.84	189.6	184.27	110.92	137.3	206.93	74.32
Merged-chr8-106929673-2	chr8	106929169	106930169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6081.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	41.76	31.79	45.32	37.78	27.99	49.03	15.84	11.5	3.75
Merged-chr6-42344407-3	chr6	42343949	42344949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5379.0	NM_001289619	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	119.56	98.61	68.45	114.03	81.17	62.7	95.06	88.88	82.44
Merged-chr5-148928779-3	chr5	148928281	148929281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-134.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	30.32	42.85	25.9	40.48	34.99	33.76	40.14	25.2	26.23
Merged-chr15-36608515-3	chr15	36608034	36609034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008774, exon 1 of 15)	5' UTR (NM_008774, exon 1 of 15)	439.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	312.91	306.42	357.03	313.74	251.45	256.41	347.48	305.1	201.1
Merged-chr15-103333906-3	chr15	103333398	103334398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	440.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	65.21	58.98	84.17	56.0	46.18	126.19	101.39	80.03	80.56
Merged-chr17-43569507-3	chr17	43568991	43569991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	1040.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	163.61	169.57	99.89	232.78	202.46	200.95	123.57	87.11	105.55
Merged-chr2-117996336-3	chr2	117995836	117996836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114866.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	95.53	86.63	54.57	105.93	102.63	94.85	48.58	41.12	39.97
Merged-chr11-17159212-3	chr11	17158710	17159710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024459)	promoter-TSS (NM_024459)	-88.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	201.36	184.31	197.94	193.64	189.87	210.59	148.92	146.8	92.43
Merged-chr5-115516811-3	chr5	115516310	115517310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	10134.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	293.46	235.46	166.49	273.26	232.79	229.08	253.48	313.05	150.51
Merged-chr2-39005138-3	chr2	39004644	39005644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025592)	promoter-TSS (NM_025592)	-13.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	124.71	95.84	71.22	126.85	118.49	142.27	148.92	107.89	69.95
Merged-chr3-97227728-3	chr3	97227212	97228212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029933)	promoter-TSS (NM_029933)	-348.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	56.63	55.75	74.0	60.72	26.12	45.82	101.39	74.28	44.97
Merged-chr14-121995010-3	chr14	121994516	121995516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-29823.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	38.33	34.56	14.8	52.63	32.66	24.92	44.36	49.52	22.48
Merged-chr2-26974159-3	chr2	26973660	26974660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001322, intron 2 of 28)	intron (NM_001001322, intron 2 of 28)	744.0	NM_001290465	279028.0	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	98.97	60.82	51.8	95.81	40.12	36.97	66.54	68.98	43.09
Merged-chrX-8192925-3	chrX	8192427	8193427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023638)	TTS (NM_023638)	585.0	NM_007898	13595.0	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	63.5	53.45	40.7	63.42	61.11	79.58	50.7	61.46	41.22
Merged-chr6-34945721-1	chr6	34945221	34946221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001025573, exon 8 of 8)	3' UTR (NM_001025573, exon 8 of 8)	24773.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	12.59	11.52	4.62	7.42	15.39	12.86	12.67	29.18	21.86
Merged-chr13-49242912-3	chr13	49242398	49243398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5396.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	44.62	32.25	12.02	45.88	22.86	32.15	25.35	18.57	21.23
Merged-chr11-73199310-4	chr11	73198857	73199857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	-125.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	190.49	169.11	115.62	196.34	201.53	113.33	196.45	186.15	91.81
Merged-chr2-117299124-3	chr2	117298631	117299631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 5 of 16)	intron (NM_011246, intron 5 of 16)	43746.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	102.97	168.19	86.95	95.81	56.91	101.28	118.29	165.37	80.56
Merged-chr17-56079134-3	chr17	56078618	56079618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304785)	promoter-TSS (NM_001304785)	215.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	86.38	76.03	75.85	54.65	41.99	51.44	118.29	106.56	64.95
Merged-chr10-80141445-3	chr10	80140931	80141931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025313)	promoter-TSS (NM_025313)	-844.0	NM_001347092	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	157.31	82.48	74.92	149.11	92.37	121.37	107.73	87.99	51.84
Merged-chr17-87379082-3	chr17	87378579	87379579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	48662.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	26.89	17.51	9.25	19.57	8.4	20.09	9.51	5.75	3.75
Merged-chr11-96967037-3	chr11	96966553	96967553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	10635.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	244.27	221.18	156.32	226.03	212.73	188.89	241.87	339.14	147.39
Merged-chr9-50553795-3	chr9	50553294	50554294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357222)	promoter-TSS (NM_001357222)	-132.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	73.22	93.08	76.77	56.0	45.72	62.7	69.71	104.35	59.33
Merged-chr14-55604430-1	chr14	55603930	55604930	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159418)	promoter-TSS (NM_001159418)	-149.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	223.1	205.97	160.94	230.08	197.33	145.49	254.54	298.91	117.41
Merged-chr8-18936894-3	chr8	18936392	18937392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	(CAAAA)n|Simple_repeat|Simple_repeat	13979.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	76.08	103.68	16.65	95.81	66.24	61.09	53.87	66.77	38.1
Merged-chr2-45270233-3	chr2	45269736	45270736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152794.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	122.42	117.04	54.57	111.33	84.9	94.85	117.24	128.23	90.56
Merged-chr8-106893664-3	chr8	106893192	106894192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	52.0	NM_001358982	21771.0	Mm.10665	NM_011574	ENSMUSG00000041438	Utp4	Cirh1a|Cirhin|Naic|Teg-292|Tex292	UTP4 small subunit processome component	protein-coding	289.46	177.86	156.32	284.06	176.34	113.33	298.9	158.74	121.78
Merged-chr3-105055137-3	chr3	105054628	105055628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1982.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	34.32	29.49	36.07	49.93	38.25	29.74	24.29	29.18	34.97
Merged-chr19-60946168-3	chr19	60945664	60946664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	56415.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	113.84	114.74	97.12	93.79	67.18	107.71	81.33	107.0	98.68
Merged-chr13-94167523-1	chr13	94167023	94168023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	109727.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	22.88	13.82	15.72	2.02	0.93	1.61	2.11	0.44	1.25
Merged-chr2-132263104-3	chr2	132262587	132263587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138651)	promoter-TSS (NM_138651)	-61.0	NM_001291040	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	117.27	93.08	125.79	135.62	97.97	105.3	133.08	113.64	55.58
Merged-chr11-102185292-3	chr11	102184767	102185767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172947)	promoter-TSS (NM_172947)	-11.0	NM_172947	268490.0	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	260.28	205.97	132.27	207.14	165.61	157.54	207.01	196.76	91.18
Merged-chr10-40500084-3	chr10	40499592	40500592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70270.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	42.33	57.14	35.15	66.8	70.44	53.85	58.09	39.8	29.98
Merged-chr10-118981611-3	chr10	118981094	118982094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54451.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	38.9	47.92	6.47	65.45	24.26	33.76	41.19	30.51	17.49
Merged-chr18-6490060-3	chr18	6489562	6490562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035446)	TTS (NR_035446)	584.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	351.81	464.47	259.91	365.7	425.46	298.21	392.9	324.55	199.22
Merged-chr6-138141423-3	chr6	138140914	138141914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361309)	promoter-TSS (NM_001361309)	-173.0	NM_001347489	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	72.08	83.86	41.62	76.92	114.76	81.99	49.64	30.95	29.35
Merged-chr9-78109102-3	chr9	78108582	78109582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	-17.0	NM_001081490	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	109.83	198.6	156.32	134.94	120.83	155.13	134.14	174.66	121.16
Merged-chr8-128595113-3	chr8	128594611	128595611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90543.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	84.09	106.9	26.82	89.06	94.7	69.13	65.48	80.03	42.47
Merged-chr15-27725212-3	chr15	27724713	27725713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43671.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	67.5	66.35	42.55	71.52	73.24	72.34	52.81	71.63	45.59
Merged-chrUn_JH584304-43301-1	chrUn_JH584304	42801	43801	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	16388.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	27.46	26.09	0.0
Merged-chr6-71632991-3	chr6	71632467	71633467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-50.0	NM_001362200	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	230.54	235.0	250.66	258.42	214.13	230.69	267.21	227.72	176.12
Merged-chr1-37474260-3	chr1	37473748	37474748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	14357.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	270.01	312.41	172.04	239.52	222.52	202.55	275.66	350.2	186.11
Merged-chr4-139192673-3	chr4	139192100	139193100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009798)	promoter-TSS (NM_009798)	-299.0	NM_009798	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	180.2	160.35	117.47	160.58	127.36	122.98	162.65	225.51	101.17
Merged-chr16-15886808-1	chr16	15886308	15887308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007679)	promoter-TSS (NM_007679)	-478.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	105.26	99.99	92.5	86.36	106.36	86.81	65.48	80.92	69.32
Merged-chr6-125165173-1	chr6	125164673	125165673	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	CpG	600.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	253.99	222.1	188.69	284.06	179.61	192.91	200.68	197.21	156.76
Merged-chr11-116335424-3	chr11	116334929	116335929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-75.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	7.44	4.15	9.25	8.77	5.13	4.82	6.34	1.77	6.87
Merged-chr6-54736292-3	chr6	54735778	54736778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	54654.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	29.17	26.26	16.65	25.64	15.39	16.08	21.12	13.71	23.73
Merged-chr4-133754286-5	chr4	133753772	133754772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-661.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	190.49	113.81	99.89	147.76	60.65	93.24	114.07	72.07	86.18
Merged-chr11-87755547-3	chr11	87755057	87756057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1307.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	123.56	121.65	105.44	118.75	75.57	108.51	142.59	165.81	88.06
Merged-chr2-139919964-3	chr2	139919457	139920457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110352, intron 9 of 12)	intron (NR_110352, intron 9 of 12)	146848.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	8.58	7.83	6.47	14.17	9.33	14.47	13.73	11.94	6.25
Merged-chr7-134697700-3	chr7	134697182	134698182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	26995.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	17.16	11.52	5.55	22.27	12.13	24.92	38.02	18.13	28.73
Merged-chr13-23424671-3	chr13	23424173	23425173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-807.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	34.32	43.31	28.67	20.24	27.52	31.35	49.64	45.1	43.09
Merged-chr14-52314671-3	chr14	52314172	52315172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015772, exon 2 of 2)	exon (NM_015772, exon 2 of 2)	1651.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	11.44	8.75	14.8	15.52	13.53	16.08	16.9	16.8	17.49
Merged-chr5-149031386-3	chr5	149030880	149031880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20236.0	NM_001313894	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	94.96	125.33	81.4	125.5	102.17	100.47	125.69	94.18	53.71
Merged-chr11-119603007-3	chr11	119602522	119603522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001306081, exon 1 of 33)	5' UTR (NM_001306081, exon 1 of 33)	117.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	113.27	126.72	83.25	98.51	101.7	91.63	108.79	96.83	54.96
Merged-chr1-157017685-3	chr1	157017178	157018178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78052.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	52.06	42.85	37.0	60.05	51.78	57.07	36.97	43.77	40.59
Merged-chr15-88490450-3	chr15	88489945	88490945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109857.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	177.91	156.21	130.42	174.75	132.95	172.01	228.14	221.97	131.78
Merged-chr6-142504276-1	chr6	142503776	142504776	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008492, intron 2 of 7)	intron (NM_008492, intron 2 of 7)	3681.0	NM_008492	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	6.86	4.15	0.92	2.7	3.27	3.22	3.17	3.1	0.62
Merged-chr6-134262208-3	chr6	134261709	134262709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 7 of 8)	intron (NM_001303102, intron 7 of 8)	-134120.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	151.02	150.22	105.44	133.59	97.97	122.18	74.99	89.76	65.58
Merged-chr12-31654900-3	chr12	31654389	31655389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028002)	promoter-TSS (NM_028002)	20.0	NM_001163126	238123.0	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	208.8	225.78	156.32	202.42	247.25	176.83	264.05	193.67	121.16
Merged-chrX-9471063-3	chrX	9470540	9471540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-1716.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	53.2	53.45	24.97	51.28	40.59	39.39	41.19	63.67	29.35
Merged-chr19-30030437-3	chr19	30029929	30030929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-84.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	158.46	189.38	218.29	172.05	157.68	212.2	175.33	150.78	141.14
Merged-chr9-97111194-3	chr9	97110698	97111698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138756)	promoter-TSS (NM_138756)	-157.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	347.24	326.7	213.66	354.9	333.55	264.45	247.15	247.61	179.86
Merged-chr7-45568305-3	chr7	45567794	45568794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025330)	TTS (NM_025330)	-1859.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	104.69	82.48	44.4	75.57	60.65	61.89	87.66	76.49	45.59
Merged-chr5-25760040-3	chr5	25759557	25760557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310504)	promoter-TSS (NM_001310504)	84.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	5.72	2.76	1.85	12.82	12.6	14.47	5.28	5.31	6.25
Merged-chr7-4150973-3	chr7	4150482	4151482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021454)	TTS (NM_021454)	-1110.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	66.93	77.87	19.42	59.38	38.72	62.7	43.3	41.56	34.35
Merged-chr2-29619612-3	chr2	29619088	29620088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039087)	promoter-TSS (NM_001039087)	-132.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	94.96	60.36	67.52	70.85	48.05	56.27	66.54	37.58	31.85
Merged-chr14-64330622-3	chr14	64330125	64331125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	L1MD|LINE|L1	86331.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	29.17	49.3	28.67	59.38	49.92	59.48	34.85	29.63	33.1
Merged-chr3-116425106-3	chr3	116424612	116425612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamSINE1|SINE|tRNA	-1080.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	22.31	33.64	17.57	25.64	21.93	24.11	30.63	35.37	16.24
Merged-chr18-77774048-3	chr18	77773539	77774539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357532)	promoter-TSS (NM_001357532)	-154.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	244.27	252.51	175.74	309.02	293.9	226.67	267.21	264.86	122.41
Merged-chr6-48086642-3	chr6	48086133	48087133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347142)	promoter-TSS (NM_001347142)	-40.0	NM_001362062	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	87.52	42.85	60.12	98.51	31.26	45.01	94.0	18.57	41.22
Merged-chr19-29064683-3	chr19	29064168	29065168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2633.0	NR_045687	100503337.0	Mm.103412	NR_045687		Gm9895	-	predicted gene 9895	ncRNA	78.37	106.44	91.57	64.1	82.57	90.02	103.51	125.13	91.18
Merged-chr10-80963400-1	chr10	80962900	80963900	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33309.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	24.03	17.97	8.32	24.96	20.99	12.86	21.12	6.63	2.5
Merged-chr4-151861965-3	chr4	151861443	151862443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-175.0	NM_001195565	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	197.93	183.39	140.59	138.32	160.48	174.42	189.06	121.6	118.04
Merged-chr8-83166117-3	chr8	83165595	83166595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027758, exon 1 of 18)	exon (NM_027758, exon 1 of 18)	743.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	473.09	490.74	345.93	435.19	524.36	314.28	407.69	422.27	239.19
Merged-chr15-102393710-3	chr15	102393208	102394208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	161.32	160.35	67.52	117.4	82.57	69.93	77.1	120.27	64.95
Merged-chr8-54530084-3	chr8	54529591	54530591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029701)	promoter-TSS (NM_029701)	-93.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	165.32	143.3	148.92	132.92	124.09	143.07	130.97	133.53	60.58
Merged-chr8-126666621-3	chr8	126666107	126667107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73171.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	109.83	79.25	54.57	127.52	82.57	116.55	97.17	66.33	59.33
Merged-chr19-9931677-1	chr19	9931177	9932177	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32144.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	190.49	129.02	110.99	212.54	160.95	147.09	117.24	133.09	71.82
Merged-chr8-47688701-3	chr8	47688213	47689213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13554.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	32.04	26.73	32.37	36.43	26.59	44.21	21.12	31.39	16.86
Merged-chr6-33401398-3	chr6	33400897	33401897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 7 of 9)	Lx8b|LINE|L1	152269.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	17.16	14.75	5.55	21.59	15.39	8.84	16.9	16.8	3.12
Merged-chr16-33251583-4	chr16	33251113	33252113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080557, intron 1 of 13)	CpG	157.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	261.43	274.17	194.24	342.08	323.29	184.87	265.1	226.39	114.29
Merged-chr10-60350927-3	chr10	60350440	60351440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4089.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	135.0	105.06	63.82	132.24	90.97	62.7	177.44	149.45	69.95
Merged-chr17-66101586-3	chr17	66101060	66102060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278415)	promoter-TSS (NM_001278415)	-1.0	NM_028388	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	221.38	229.47	161.87	186.22	239.32	153.52	222.86	204.72	123.03
Merged-chr14-70994549-3	chr14	70994025	70995025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104418.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	29.17	27.65	19.42	31.04	29.39	37.78	69.71	54.83	29.35
Merged-chr7-80079032-3	chr7	80078521	80079521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	-3764.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	68.07	44.7	30.52	65.45	42.92	50.64	57.03	54.39	45.59
Merged-chr8-40862500-1	chr8	40862000	40863000	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001044740, exon 1 of 12)	5' UTR (NM_001044740, exon 1 of 12)	133.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	5.15	0.0	3.7	4.05	1.87	1.61	31.69	27.41	11.24
Merged-chr10-66940524-3	chr10	66940007	66941007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20123.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	20.02	6.45	1.85	23.62	5.6	0.8	10.56	9.29	8.74
Merged-chr17-45573911-3	chr17	45573418	45574418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-657.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	276.87	282.92	224.76	252.34	197.33	205.77	202.79	269.72	173.62
Merged-chr4-149793881-1	chr4	149793381	149794381	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19614.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	21.17	4.15	13.87	7.42	6.06	6.43	63.37	31.84	47.46
Merged-chr5-120514423-3	chr5	120513907	120514907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	3215.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	183.63	158.51	134.12	238.85	159.55	177.64	278.83	223.74	154.88
Merged-chr3-89246409-3	chr3	89245904	89246904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025327)	promoter-TSS (NM_025327)	-34.0	NM_025327	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	57.78	56.68	33.3	51.28	32.19	42.6	53.87	32.72	33.1
Merged-chr2-25547012-3	chr2	25546514	25547514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	-74.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	251.7	152.52	131.34	226.71	112.9	133.43	239.75	172.89	86.81
Merged-chr6-108566752-3	chr6	108566246	108567246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56421.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	70.93	60.36	43.47	72.19	53.65	57.07	100.34	95.07	35.6
Merged-chr13-41596893-3	chr13	41596405	41597405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9311.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	67.5	71.42	47.17	60.05	45.25	65.91	58.09	80.03	50.59
Merged-chr8-123032918-3	chr8	123032411	123033411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	9373.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	54.35	38.25	12.95	43.86	27.99	36.17	35.91	34.93	16.24
Merged-chrX-7697098-3	chrX	7696589	7697589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173747)	promoter-TSS (NM_173747)	-45.0	NM_173747	209416.0	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	63.5	67.74	43.47	47.23	48.05	36.97	48.58	39.8	22.48
Merged-chr11-117963560-3	chr11	117963072	117964072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5794.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	92.1	64.97	42.55	99.86	55.98	45.82	66.54	53.06	39.97
Merged-chr12-108835945-3	chr12	108835460	108836460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181328)	promoter-TSS (NM_181328)	-84.0	NM_181328	214663.0	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	5.15	7.83	7.4	12.14	8.86	4.02	13.73	7.52	1.87
Merged-chr6-128408741-3	chr6	128408243	128409243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133927)	TTS (NM_133927)	8977.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	12.59	14.28	13.87	10.8	17.73	18.49	9.51	9.73	10.62
Merged-chr2-91928039-3	chr2	91927557	91928557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007699, exon 2 of 2)	exon (NM_007699, exon 2 of 2)	3645.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	5.72	5.07	12.02	8.1	7.0	6.43	3.17	5.31	1.87
Merged-chr18-4367328-3	chr18	4366828	4367828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	-8264.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	111.55	84.32	86.02	97.83	62.98	77.97	83.44	76.49	75.57
Merged-chr6-128888950-3	chr6	128888442	128889442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1355.0	NM_001289707	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	153.31	206.43	145.22	138.32	125.02	104.49	147.87	145.47	86.81
Merged-chr12-69361522-3	chr12	69361014	69362014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4338.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	145.3	175.56	126.72	126.85	132.95	137.45	147.87	204.28	124.91
Merged-chr2-166623734-3	chr2	166623201	166624201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	59179.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	113.27	63.59	55.5	105.93	64.38	44.21	78.16	68.54	31.23
Merged-chr7-6286432-3	chr7	6285929	6286929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024928)	promoter-TSS (NM_001024928)	-151.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	226.53	183.85	119.32	205.79	208.06	159.95	198.56	227.72	97.43
Merged-chr18-26863698-3	chr18	26863187	26864187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109530.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	34.32	61.75	44.4	43.86	50.38	37.78	108.79	133.09	49.34
Merged-chr18-61087110-3	chr18	61086626	61087626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18446.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	95.53	101.37	115.62	93.79	91.44	100.47	141.53	141.49	74.94
Merged-chr7-25268174-3	chr7	25267678	25268678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	479.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	382.13	320.71	234.94	324.54	295.3	168.8	280.95	306.86	142.39
Merged-chr11-44414983-5	chr11	44414467	44415467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303244)	TTS (NM_001303244)	14904.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	239.69	282.0	154.47	221.98	234.19	190.5	257.71	309.96	148.64
Merged-chr19-8942442-1	chr19	8941942	8942942	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_144872)	TTS (NM_144872)	522.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	340.37	382.91	309.86	274.61	335.89	286.15	262.99	306.42	186.11
Merged-chr1-191317976-3	chr1	191317472	191318472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025424, exon 1 of 4)	exon (NM_025424, exon 1 of 4)	146.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	71.51	42.85	57.35	83.66	43.85	57.07	85.55	48.2	40.59
Merged-chr16-77034868-3	chr16	77034354	77035354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 2 of 23)	MIR|SINE|MIR	20785.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	14.3	16.13	20.35	18.22	17.73	15.27	20.07	14.15	24.98
Merged-chr16-31234194-3	chr16	31233717	31234717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER112|DNA|hAT-Charlie	-32979.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	290.6	244.22	187.77	263.81	193.13	172.81	264.05	257.78	138.65
Merged-chr13-37581073-3	chr13	37580570	37581570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	235725.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	159.03	143.76	68.45	106.61	92.37	84.4	202.79	231.25	121.16
Merged-chr17-34135504-3	chr17	34135014	34136014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010386, exon 2 of 6)	5' UTR (NM_010386, exon 2 of 6)	-9902.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	74.37	47.46	43.47	31.71	30.32	30.54	66.54	69.86	35.6
Merged-chr13-113435344-3	chr13	113434855	113435855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	67489.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	136.15	141.0	110.07	113.35	75.11	121.37	78.16	59.69	46.84
Merged-chr8-119423967-3	chr8	119423461	119424461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13201.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	31.46	22.12	17.57	49.25	35.92	22.51	25.35	13.71	9.99
Merged-chr17-47010556-3	chr17	47010065	47011065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-33.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	240.26	214.73	162.79	211.19	198.73	172.81	190.11	202.07	168.0
Merged-chr16-55863559-3	chr16	55863070	55864070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 3 of 5)	intron (NM_001134457, intron 3 of 5)	-24929.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.72	8.29	7.4	16.19	13.06	9.65	9.51	12.82	5.62
Merged-chr15-10877825-1	chr15	10877325	10878325	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	48774.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	10.87	13.36	13.87	8.77	11.2	21.7	26.4	18.13	12.49
Merged-chr7-28377543-3	chr7	28377020	28378020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011756, exon 2 of 2)	3' UTR (NM_011756, exon 2 of 2)	1708.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	307.76	312.87	246.96	268.54	175.41	195.32	257.71	274.14	237.95
Merged-chr4-126260967-3	chr4	126260454	126261454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1451.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	191.07	132.71	92.5	151.81	120.83	143.07	148.92	149.89	109.29
Merged-chr17-80061421-3	chr17	80060952	80061952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152119, intron 1 of 13)	CpG	816.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	119.56	110.13	103.59	176.78	171.21	147.09	125.69	106.12	84.31
Merged-chr4-132618024-3	chr4	132617522	132618522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21024.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	97.25	58.98	43.47	104.58	62.98	66.71	78.16	91.09	51.21
Merged-chr6-85432031-3	chr6	85431570	85432570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144918)	promoter-TSS (NM_144918)	94.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	34.32	32.72	29.6	37.11	25.19	36.97	55.98	52.18	16.86
Merged-chr16-38346984-3	chr16	38346449	38347449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017429)	promoter-TSS (NM_001017429)	-50.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	191.07	171.41	137.82	154.51	141.35	145.49	196.45	198.09	111.17
Merged-chr11-23769827-3	chr11	23769324	23770324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	1146.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	244.27	253.89	154.47	294.85	182.87	177.64	340.09	384.69	158.01
Merged-chr19-12502152-3	chr19	12501645	12502645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172442)	promoter-TSS (NM_172442)	-149.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	103.54	52.53	38.85	99.18	69.98	90.83	57.03	32.28	28.73
Merged-chr19-42001413-3	chr19	42000917	42001917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	19654.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	172.76	114.74	86.95	143.71	100.77	133.43	126.74	123.81	89.93
Merged-chr2-153168333-3	chr2	153167828	153168828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	7027.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	106.97	80.18	88.8	126.17	69.04	111.73	174.27	149.89	78.07
Merged-chr15-39968280-1	chr15	39967780	39968780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045719)	TTS (NR_045719)	5631.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	30.32	8.75	0.0	76.92	52.25	16.88	8.45	4.86	1.25
Merged-chr7-90482862-3	chr7	90482354	90483354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6859.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	25.74	33.18	16.65	42.51	28.92	11.25	26.4	19.9	5.62
Merged-chr5-105876456-3	chr5	105875963	105876963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-105.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	272.3	193.99	167.42	292.83	178.21	200.14	241.87	168.91	111.79
Merged-chr2-173018126-1	chr2	173017626	173018626	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3776.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	8.58	5.53	3.7	6.75	4.2	9.65	5.28	3.98	6.25
Merged-chr14-7987105-3	chr14	7986604	7987604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 2 of 7)	intron (NM_007870, intron 2 of 7)	7078.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	68.65	81.1	62.9	34.41	38.72	44.21	43.3	72.07	36.22
Merged-chr18-90579700-3	chr18	90579201	90580201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362365)	promoter-TSS (NM_001362365)	-124.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	32.61	26.73	21.27	54.65	35.92	23.31	61.26	61.02	21.23
Merged-chr15-86212390-3	chr15	86211909	86212909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2050.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	136.15	89.85	96.2	132.24	75.11	112.53	145.75	108.33	69.95
Merged-chr8-10946177-3	chr8	10945661	10946661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17704.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	26.89	19.35	25.9	32.39	17.73	16.08	23.24	11.94	13.74
Merged-chr11-49984143-3	chr11	49983647	49984647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41184.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	54.35	56.68	36.07	52.63	51.32	50.64	98.23	106.56	48.09
Merged-chr13-93997189-3	chr13	93996705	93997705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60591.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	22.88	25.34	14.8	43.86	51.32	32.96	31.69	29.18	16.24
Merged-chr9-25509016-3	chr9	25508515	25509515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	27418.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	122.99	95.38	54.57	119.43	76.04	53.85	110.9	125.13	56.21
Merged-chr3-51209962-3	chr3	51209487	51210487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-14460.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	109.26	98.15	85.1	160.58	124.09	132.63	96.11	74.73	78.69
Merged-chr7-42692789-3	chr7	42692292	42693292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-74.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	42.9	31.79	31.45	37.11	24.72	37.78	30.63	40.68	22.48
Merged-chr2-23068126-3	chr2	23067618	23068618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028793)	promoter-TSS (NM_028793)	-83.0	NR_149742	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	180.77	263.57	209.96	172.73	218.79	197.73	204.9	245.4	144.27
Merged-chr6-83033561-3	chr6	83033060	83034060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-89.0	NM_001291799	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	322.07	275.55	212.74	343.43	342.88	233.9	347.48	331.18	139.27
Merged-chr7-45238114-3	chr7	45237619	45238619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007645, intron 2 of 7)	intron (NM_007645, intron 2 of 7)	720.0	NM_007645	12493.0	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	73.22	82.48	67.52	91.09	90.04	100.47	124.63	119.39	96.18
Merged-chr16-22398932-3	chr16	22398442	22399442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358428, intron 9 of 12)	intron (NM_001358428, intron 9 of 12)	39426.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	162.46	168.65	117.47	141.69	108.7	117.35	154.2	187.92	103.67
Merged-chrX-167092072-3	chrX	167091575	167092575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21705.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	50.91	41.93	27.75	45.21	46.65	67.52	17.96	29.18	39.35
Merged-chr2-80315070-3	chr2	80314571	80315571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024181)	promoter-TSS (NM_024181)	-395.0	NM_024181	66861.0	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	74.37	102.75	50.87	74.22	81.64	56.27	85.55	72.96	73.07
Merged-chr16-56029789-3	chr16	56029304	56030304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024622)	promoter-TSS (NM_001024622)	-87.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	590.36	599.02	368.13	501.99	527.62	333.57	443.6	464.28	247.31
Merged-chr4-33248639-3	chr4	33248103	33249103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033225, exon 1 of 2)	5' UTR (NM_001033225, exon 1 of 2)	184.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	371.83	247.44	247.89	340.06	242.12	264.45	322.14	298.46	190.48
Merged-chr7-16046595-3	chr7	16046107	16047107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25238.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	147.59	125.79	140.59	144.39	111.96	163.97	195.39	137.51	118.04
Merged-chr9-21030961-3	chr9	21030484	21031484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023892)	TTS (NM_023892)	-1054.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	72.08	60.82	73.07	76.92	62.05	83.59	78.16	105.24	54.33
Merged-chr6-89258324-3	chr6	89257831	89258831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27394.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	185.92	146.53	124.87	165.98	142.29	160.76	153.15	156.53	98.68
Merged-chr15-39784086-3	chr15	39783583	39784583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 9 of 9)	intron (NM_001164466, intron 9 of 9)	-12962.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	13.73	17.05	11.1	25.64	20.06	17.68	25.35	17.69	11.24
Merged-chr11-87759732-3	chr11	87759216	87760216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172449)	promoter-TSS (NM_172449)	-825.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	25.74	20.27	12.02	19.57	10.73	20.9	17.96	10.17	16.24
Merged-chr11-120348487-3	chr11	120347952	120348952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038126)	promoter-TSS (NR_038126)	43.0	NM_001313923	11465.0	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	392.43	305.96	327.43	346.13	255.18	258.02	315.8	334.28	196.73
Merged-chr7-102247141-3	chr7	102246645	102247645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	2973.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	50.91	58.06	52.72	55.33	37.79	90.83	57.03	90.64	76.82
Merged-chr3-59120118-3	chr3	59119619	59120619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	10643.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	56.06	46.08	31.45	45.88	36.39	49.03	35.91	39.35	16.24
Merged-chr2-13557508-6	chr2	13557005	13558005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12841.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	53.77	37.32	14.8	66.8	42.45	41.8	44.36	28.3	14.99
Merged-chr15-27923829-3	chr15	27923333	27924333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	102015.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	65.21	44.24	12.95	72.87	49.92	28.13	39.08	45.1	21.23
Merged-chr14-31419456-1	chr14	31418956	31419956	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-1779.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	14.3	17.05	25.9	22.27	15.39	27.33	27.46	19.01	16.24
Merged-chr3-96268641-3	chr3	96268147	96269147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178215)	promoter-TSS (NM_178215)	-7.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	124.71	122.11	116.54	113.35	105.9	131.02	117.24	133.53	94.3
Merged-chr17-15826634-3	chr17	15826152	15827152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178615)	promoter-TSS (NM_178615)	-66.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	60.64	76.49	81.4	68.15	69.98	52.25	77.1	65.44	48.09
Merged-chrX-38564669-3	chrX	38564173	38565173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028288, intron 3 of 22)	CpG	11523.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	160.75	165.42	135.04	151.81	166.08	122.98	170.05	187.04	93.05
Merged-chr5-146676680-3	chr5	146676179	146677179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-91440.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	13.73	5.53	2.77	6.07	5.6	1.61	12.67	3.98	5.62
Merged-chr4-106840098-3	chr4	106839558	106840558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35051.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	50.34	50.23	44.4	27.66	28.46	32.96	59.15	39.8	31.23
Merged-chr2-11548740-3	chr2	11548235	11549235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	5194.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	42.9	34.56	37.92	43.86	33.59	14.47	31.69	25.65	26.23
Merged-chr11-119086338-3	chr11	119085835	119086835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007625)	promoter-TSS (NM_007625)	-98.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	216.81	151.14	223.84	242.22	144.62	162.37	160.54	101.26	108.04
Merged-chr18-64489091-3	chr18	64488596	64489596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348055)	promoter-TSS (NM_001348055)	2.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	144.16	149.75	74.92	163.96	193.13	107.71	161.6	121.15	52.46
Merged-chr8-83997029-3	chr8	83996535	83997535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081415)	promoter-TSS (NM_001081415)	-637.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	69.22	53.45	89.72	80.29	62.05	74.75	66.54	47.75	47.46
Merged-chr17-35121407-3	chr17	35120906	35121906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	23.0	NM_001303445	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	254.56	212.42	216.44	163.96	211.33	213.81	168.99	206.49	85.56
Merged-chr2-136948135-3	chr2	136947622	136948622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149746, intron 4 of 8)	intron (NR_149746, intron 4 of 8)	48771.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	9.72	14.75	8.32	13.49	20.99	12.86	10.56	12.82	13.12
Merged-chr8-78510403-3	chr8	78509891	78510891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104094, intron 1 of 9)	intron (NR_104094, intron 1 of 9)	1063.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	94.96	73.73	34.22	72.87	49.45	44.21	95.06	54.83	18.74
Merged-chr14-14640358-3	chr14	14639872	14640872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62653.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	32.04	32.25	32.37	27.66	20.99	46.62	21.12	19.01	23.11
Merged-chr2-117996891-3	chr2	117996379	117997379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114323.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	104.69	89.39	45.32	97.16	104.96	93.24	54.92	42.89	43.72
Merged-chr10-66920364-3	chr10	66919874	66920874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138560)	promoter-TSS (NR_138560)	10.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	32.04	12.44	12.02	21.59	16.33	19.29	22.18	24.76	18.74
Merged-chr12-80853827-3	chr12	80853300	80854300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	63268.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	118.42	111.05	70.3	96.48	70.91	87.61	107.73	101.7	69.32
Merged-chr1-45881519-3	chr1	45881021	45882021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44073.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	176.19	177.86	104.52	209.16	130.16	121.37	170.05	176.42	103.05
Merged-chr1-156474315-3	chr1	156473811	156474811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009230)	promoter-TSS (NM_009230)	17.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	137.29	145.15	112.84	156.53	125.49	112.53	152.09	153.87	86.81
Merged-chr15-76698093-3	chr15	76697578	76698578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182805, exon 5 of 11)	exon (NM_182805, exon 5 of 11)	1352.0	NM_182805	76282.0	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	166.47	117.5	60.12	190.95	132.95	127.8	119.35	137.96	63.08
Merged-chr15-97175224-3	chr15	97174728	97175728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7984.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	94.39	82.48	88.8	91.09	85.37	126.19	95.06	99.49	85.56
Merged-chr11-26586207-3	chr11	26585702	26586702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7718.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	151.02	204.13	142.44	144.39	152.08	132.63	141.53	148.13	79.94
Merged-chr10-66930876-3	chr10	66930378	66931378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10494.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	191.64	129.02	57.35	253.02	154.41	107.71	192.23	190.57	120.53
Merged-chr18-12168631-3	chr18	12168136	12169136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-94.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	144.73	179.71	144.29	143.71	136.22	127.8	220.74	168.47	114.29
Merged-chr5-35103287-3	chr5	35102779	35103779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013587, intron 1 of 7)	intron (NM_013587, intron 1 of 7)	2418.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	12.01	8.75	16.65	17.54	10.73	12.06	15.84	11.5	11.24
Merged-chr17-65730130-3	chr17	65729626	65730626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	42626.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	114.41	88.93	60.12	112.68	82.11	90.83	98.23	116.29	77.44
Merged-chr4-150239768-1	chr4	150239268	150240268	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2444.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	47.48	52.99	21.27	60.72	51.78	72.34	66.54	50.41	44.97
Merged-chrX-103616940-3	chrX	103616439	103617439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	CpG	6815.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	109.83	147.91	91.57	133.59	160.95	100.47	92.94	155.2	66.82
Merged-chr2-114175366-3	chr2	114174879	114175879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009702)	promoter-TSS (NM_009702)	-40.0	NM_001290788	11834.0	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	50.91	44.24	20.35	46.56	41.05	28.94	42.25	37.14	17.49
Merged-chr7-75455526-3	chr7	75455022	75456022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029332)	promoter-TSS (NM_029332)	-12.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	41.76	33.64	19.42	36.43	29.86	25.72	32.74	15.48	21.23
Merged-chr13-113592941-3	chr13	113592458	113593458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_130796, exon 2 of 2)	3' UTR (NM_130796, exon 2 of 2)	25606.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	48.05	43.77	49.02	41.16	46.18	64.3	68.65	51.73	46.84
Merged-chr6-87552594-3	chr6	87552096	87553096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19337.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	29.75	21.2	3.7	43.86	26.12	16.08	40.14	43.77	19.36
Merged-chr3-95929194-3	chr3	95928692	95929692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253758)	promoter-TSS (NM_001253758)	-65.0	NM_001253758	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	96.68	67.74	51.8	101.88	59.71	41.8	81.33	70.75	41.84
Merged-chr17-44027454-2	chr17	44026947	44027947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-51355.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	52.63	29.95	9.25	20.24	8.86	6.43	1.06	4.42	6.25
Merged-chr2-164867377-3	chr2	164866873	164867873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9665.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	154.45	146.53	137.82	190.95	119.43	182.46	184.83	233.46	96.8
Merged-chr1-21079344-3	chr1	21078854	21079854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177409)	promoter-TSS (NM_177409)	-129.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	40.04	35.02	29.6	39.13	38.72	49.83	24.29	25.65	22.48
Merged-chr5-88508707-3	chr5	88508236	88509236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19161.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	145.3	135.01	99.89	84.34	74.64	90.02	120.41	135.3	84.94
Merged-chr17-88337866-3	chr17	88337352	88338352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102852.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	41.76	29.03	22.2	64.77	52.72	57.87	41.19	43.33	23.11
Merged-chr3-20017744-3	chr3	20017239	20018239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 8 of 16)	intron (NM_080634, intron 8 of 16)	17571.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	73.22	87.55	40.7	82.32	55.05	60.28	91.89	70.75	47.46
Merged-chr9-75547365-3	chr9	75546848	75547848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12309.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	32.61	24.88	17.57	31.71	23.79	28.13	36.97	33.16	35.6
Merged-chr16-20426427-3	chr16	20425932	20426932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013790)	promoter-TSS (NM_013790)	-38.0	NM_176839	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	34.32	31.79	36.07	60.72	31.26	49.03	52.81	27.86	17.49
Merged-chr7-135598066-3	chr7	135597561	135598561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	4580.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	31.46	32.25	12.95	31.04	33.59	65.11	34.85	22.99	29.98
Merged-chr13-55369750-3	chr13	55369243	55370243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016758)	promoter-TSS (NM_016758)	11.0	NM_016758	51791.0	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	45.76	33.18	23.12	31.71	18.19	28.94	22.18	16.36	15.61
Merged-chr12-105823672-3	chr12	105823165	105824165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347440, exon 16 of 21)	exon (NM_001347440, exon 16 of 21)	38968.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	17.73	23.96	11.1	25.64	17.26	21.7	24.29	20.78	14.99
Merged-chr15-38519433-3	chr15	38518930	38519930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102458)	promoter-TSS (NM_001102458)	-164.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	313.49	255.27	187.77	295.53	290.17	192.11	294.68	330.74	175.49
Merged-chrX-42069065-3	chrX	42068557	42069557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125870, intron 1 of 5)	intron (NR_125870, intron 1 of 5)	659.0	NR_125870	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	73.79	73.73	55.5	72.19	47.58	64.3	79.21	75.61	41.22
Merged-chr2-153090725-3	chr2	153090233	153091233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17735.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	189.92	147.91	130.42	142.37	99.37	165.58	181.66	165.81	97.43
Merged-chr11-101448412-3	chr11	101447898	101448898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027320)	promoter-TSS (NM_027320)	-14.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	65.21	79.72	54.57	63.42	76.97	93.24	103.51	125.58	77.44
Merged-chr7-144943513-3	chr7	144943010	144944010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3585.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	17.16	9.68	0.0	19.57	16.79	12.86	27.46	20.78	11.87
Merged-chr15-8444625-3	chr15	8444120	8445120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027707)	promoter-TSS (NM_027707)	-157.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	234.54	176.94	223.84	206.46	144.62	177.64	224.97	156.97	154.88
Merged-chrX-140537868-3	chrX	140537352	140538352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4816.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	40.62	48.84	18.5	39.81	27.99	31.35	22.18	20.78	26.85
Merged-chr5-33352558-2	chr5	33352050	33353050	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	L1MB7|LINE|L1	16978.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	121.28	146.53	84.17	114.7	158.61	129.41	176.38	145.92	64.95
Merged-chr6-129233041-3	chr6	129232559	129233559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 3 of 3)	intron (NR_040268, intron 3 of 3)	4986.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	102.4	124.87	83.25	141.02	91.9	108.51	126.74	127.34	52.46
Merged-chr2-150362760-3	chr2	150362272	150363272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027017)	promoter-TSS (NM_027017)	-7.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	44.62	44.24	44.4	33.74	48.52	47.42	61.26	76.49	27.48
Merged-chr9-120110353-3	chr9	120109838	120110838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144793)	promoter-TSS (NM_144793)	-61.0	NM_144793	208638.0	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	208.8	206.89	182.22	150.46	154.88	106.1	128.85	185.27	109.29
Merged-chr7-67526078-3	chr7	67525592	67526592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	MER21B|LTR|ERVL	119144.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	102.4	82.48	71.22	91.76	60.18	60.28	32.74	41.12	42.47
Merged-chr3-21953080-3	chr3	21952584	21953584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123568.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	153.88	139.62	86.02	155.19	152.08	118.16	164.76	183.94	61.83
Merged-chr7-122132966-3	chr7	122132461	122133461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289845)	promoter-TSS (NM_001289845)	-15.0	NM_001289845	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	180.77	158.97	134.12	168.68	162.34	165.58	192.23	215.34	119.91
Merged-chr2-158179160-3	chr2	158178666	158179666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12842.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	67.5	39.63	24.05	78.27	40.59	39.39	45.42	41.12	7.49
Merged-chr14-29978480-3	chr14	29978024	29979024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027493, exon 1 of 13)	exon (NM_027493, exon 1 of 13)	187.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	156.74	188.92	169.27	134.94	171.68	151.92	134.14	144.15	87.43
Merged-chr6-72391331-3	chr6	72390829	72391829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016794)	promoter-TSS (NM_016794)	-662.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	65.79	60.36	66.6	58.03	41.99	54.66	89.78	107.45	53.71
Merged-chr9-56465499-3	chr9	56464999	56465999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	46880.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	18.88	16.13	11.1	18.22	15.39	11.25	10.56	9.73	7.49
Merged-chr2-12053477-3	chr2	12052994	12053994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247752.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	49.77	50.69	49.02	45.88	39.19	40.99	72.88	46.87	51.84
Merged-chr7-126745135-1	chr7	126744635	126745635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-14491.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	22.88	20.27	7.4	8.77	6.06	13.66	13.73	18.13	19.36
Merged-chr3-152210958-3	chr3	152210448	152211448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356364)	promoter-TSS (NM_001356364)	526.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	494.25	414.71	298.76	421.7	454.85	352.06	409.8	342.68	222.96
Merged-chr2-119208893-3	chr2	119208362	119209362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139139)	promoter-TSS (NM_139139)	-67.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	135.0	131.78	132.27	123.47	154.88	140.66	161.6	191.02	96.8
Merged-chr2-167589477-3	chr2	167588997	167589997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	42508.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	430.18	372.77	340.38	376.49	325.62	311.87	353.82	408.56	227.95
Merged-chr15-73731063-3	chr15	73730568	73731568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	6138.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	77.8	91.24	94.35	76.24	49.45	88.42	102.45	65.0	77.44
Merged-chr15-79742558-3	chr15	79742045	79743045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205345)	promoter-TSS (NM_001205345)	-9.0	NM_001205345	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	541.73	326.24	273.79	524.26	280.84	230.69	367.55	243.19	162.38
Merged-chr17-33640157-5	chr17	33639604	33640604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028279, intron 1 of 9)	intron (NR_028279, intron 1 of 9)	2009.0	NR_028279	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	97.82	110.13	52.72	97.16	65.78	81.99	136.25	96.83	61.2
Merged-chr8-37037663-2	chr8	37037154	37038154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13416.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	26.31	23.96	11.1	28.34	20.06	20.09	3.17	0.88	2.5
Merged-chr7-19823628-3	chr7	19823129	19824129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033601)	promoter-TSS (NM_033601)	-874.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	257.42	215.65	196.09	253.69	168.88	197.73	223.91	258.67	126.15
Merged-chr4-128983929-3	chr4	128983457	128984457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-9267.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	179.05	135.93	124.87	154.51	92.84	122.18	201.73	200.3	68.07
Merged-chr3-30855720-3	chr3	30855221	30856221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-229.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	100.11	87.55	31.45	160.58	147.88	105.3	85.55	121.6	38.72
Merged-chr14-54410096-3	chr14	54409621	54410621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253680)	promoter-TSS (NM_001253680)	-649.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	183.63	171.41	155.39	230.75	181.94	222.65	203.84	250.71	123.66
Merged-chr8-117262881-3	chr8	117262377	117263377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	5858.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	41.19	36.4	31.45	47.9	19.13	45.01	42.25	32.28	29.35
Merged-chr4-48124946-3	chr4	48124438	48125438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	19.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	58.35	58.06	38.85	60.05	60.18	62.7	69.71	46.87	23.11
Merged-chr13-14630228-3	chr13	14629744	14630744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001104646)	promoter-TSS (NM_001104646)	-1.0	NM_001104646	105351.0	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	57.21	58.06	29.6	60.05	72.78	47.42	50.7	63.67	34.35
Merged-chr8-115398200-3	chr8	115397708	115398708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	308686.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	14.87	10.6	9.25	12.82	8.86	12.06	29.57	19.01	6.25
Merged-chrX-75674242-3	chrX	75673732	75674732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90467.0	NR_029443	74396.0	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik|Dxz4	RIKEN cDNA 4933407K13 gene	ncRNA	14.87	12.9	7.4	9.45	11.66	6.43	14.79	10.61	8.12
Merged-chr11-116853680-2	chr11	116853188	116854188	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-74.0	NM_001361585	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	503.98	362.18	246.04	578.91	411.93	353.67	356.99	414.31	186.73
Merged-chr5-123076277-3	chr5	123075766	123076766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039723)	promoter-TSS (NM_001039723)	-9.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	175.62	112.43	60.12	186.22	123.62	93.24	119.35	102.58	54.33
Merged-chrX-159645496-1	chrX	159644996	159645996	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	18224.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	18.31	10.6	7.4	18.89	14.93	4.82	5.28	8.4	8.12
Merged-chr12-72070444-3	chr12	72069949	72070949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181752, exon 1 of 1)	exon (NM_181752, exon 1 of 1)	542.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	4.58	4.61	5.55	6.75	2.33	1.61	5.28	0.44	5.62
Merged-chr3-126696765-3	chr3	126696276	126697276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	99825.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	42.9	45.62	26.82	29.01	28.46	19.29	43.3	40.24	24.98
Merged-chr3-97964987-3	chr3	97964457	97965457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	34784.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	86.38	64.97	26.82	92.44	84.44	50.64	50.7	39.8	13.74
Merged-chr2-143035162-3	chr2	143034658	143035658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27911.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	37.76	48.38	36.07	74.89	66.24	51.44	46.47	75.61	36.85
Merged-chr11-97415511-3	chr11	97415004	97416004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34656.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	84.09	64.51	53.65	136.97	139.02	77.97	85.55	68.09	29.98
Merged-chr17-48230887-3	chr17	48230370	48231370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-1869.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	13.73	9.68	12.95	9.45	5.13	11.25	3.17	5.31	3.75
Merged-chr2-52941800-3	chr2	52941265	52942265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83897.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	118.99	122.57	68.45	119.43	125.96	114.14	92.94	144.15	56.21
Merged-chr8-123041247-3	chr8	123040741	123041741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	1043.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	207.08	235.0	239.56	196.34	177.74	208.18	226.02	224.18	237.95
Merged-chr12-85472260-3	chr12	85471755	85472755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1635.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	358.11	231.77	138.74	319.14	252.85	166.38	224.97	248.94	118.04
Merged-chr5-72170306-3	chr5	72169818	72170818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2129.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	54.92	49.3	44.4	39.81	34.52	42.6	36.97	50.41	46.22
Merged-chr17-64754214-3	chr17	64753715	64754715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12896.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	150.45	204.59	121.17	199.04	188.0	141.47	175.33	233.46	124.91
Merged-chr8-47533559-3	chr8	47533057	47534057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177240)	promoter-TSS (NM_177240)	-87.0	NM_177240	320714.0	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	84.66	100.91	114.69	93.11	104.5	95.65	114.07	95.95	78.07
Merged-chrX-134554619-3	chrX	134554123	134555123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013482, intron 11 of 18)	intron (NM_013482, intron 11 of 18)	-12953.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	33.75	59.44	58.27	39.81	45.72	45.82	33.8	47.31	41.22
Merged-chr3-65957407-3	chr3	65956900	65957900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 2 of 10)	intron (NM_019937, intron 2 of 10)	849.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	315.77	358.49	261.76	408.88	307.9	242.74	294.68	290.5	196.1
Merged-chr9-65535397-3	chr9	65534892	65535892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44695.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	371.83	240.99	171.12	349.5	200.13	188.89	246.09	250.71	111.79
Merged-chr6-15729007-3	chr6	15728502	15729502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8341.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	112.69	142.38	87.87	171.38	147.42	97.26	130.97	144.15	73.69
Merged-chr5-45856616-3	chr5	45856102	45857102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172153)	promoter-TSS (NM_172153)	-50.0	NM_172153	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	156.74	156.21	115.62	171.38	139.95	117.35	175.33	138.84	79.32
Merged-chr3-89202860-3	chr3	89202378	89203378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008094)	promoter-TSS (NM_008094)	-47.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	85.81	72.8	37.92	76.92	85.84	69.13	72.88	96.83	36.85
Merged-chr14-14800547-3	chr14	14800061	14801061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20254.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	79.52	86.63	74.0	58.7	65.31	97.26	78.16	56.16	71.2
Merged-chr2-27540292-3	chr2	27539791	27540791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25144.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	244.27	256.2	142.44	209.84	261.24	183.26	217.57	307.75	106.79
Merged-chr2-145859520-3	chr2	145859041	145860041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-43700.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	37.76	24.88	26.82	44.53	14.0	35.37	25.35	15.92	31.23
Merged-chr2-18672321-3	chr2	18671819	18672819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147778)	promoter-TSS (NM_147778)	-143.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	148.16	153.44	110.07	170.03	174.47	148.7	192.23	154.32	135.52
Merged-chr3-100440894-3	chr3	100440387	100441387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14482.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	61.78	67.27	45.32	73.54	93.77	27.33	133.08	145.92	44.97
Merged-chr7-142340259-3	chr7	142339758	142340758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	32001.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	183.63	196.75	124.87	59.38	37.79	47.42	124.63	145.92	93.68
Merged-chr15-62392564-3	chr15	62392053	62393053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-173102.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	57.21	61.28	52.72	41.16	43.85	57.07	43.3	44.66	39.35
Merged-chr3-84715232-3	chr3	84714719	84715719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49027.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	14.3	7.37	9.25	19.57	14.93	16.08	4.22	8.84	6.25
Merged-chr2-166712483-3	chr2	166711984	166712984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1348.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	402.73	258.04	198.87	361.65	181.01	239.53	384.45	327.2	187.98
Merged-chr3-121890790-3	chr3	121890289	121891289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62440.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	44.05	24.42	24.05	17.54	15.86	16.88	36.97	25.65	21.23
Merged-chr8-115612327-3	chr8	115611819	115612819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	94575.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	107.55	116.58	60.12	76.92	94.23	90.83	141.53	113.19	76.19
Merged-chr15-76243461-3	chr15	76242957	76243957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163575)	promoter-TSS (NM_001163575)	-17.0	NM_001163575	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	124.14	103.68	77.7	101.21	68.11	113.33	115.12	107.89	55.58
Merged-chr4-117915143-3	chr4	117914643	117915643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-144.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	94.39	103.68	84.17	91.76	92.84	122.18	135.19	87.99	76.82
Merged-chr3-38143710-3	chr3	38143203	38144203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64416.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	162.46	146.07	77.7	147.09	121.29	84.4	203.84	223.74	60.58
Merged-chr8-85299683-3	chr8	85299189	85300189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022997)	promoter-TSS (NM_022997)	57.0	NR_028268	56452.0	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	177.91	173.72	165.57	141.02	181.94	145.49	160.54	130.88	118.66
Merged-chr16-21642202-3	chr16	21641712	21642712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	52453.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	182.49	148.83	124.87	184.2	123.16	156.74	179.55	209.15	88.68
Merged-chr5-90903706-3	chr5	90903218	90904218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-181.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	90.96	38.71	27.75	82.99	42.45	58.68	66.54	33.6	36.22
Merged-chr5-18014390-3	chr5	18013879	18014879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51809.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	89.24	82.94	37.0	84.34	71.38	79.58	90.83	108.77	68.7
Merged-chr16-58482798-3	chr16	58482267	58483267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	MLT1J|LTR|ERVL-MaLR	40659.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	64.64	53.91	72.15	79.62	48.05	86.81	62.31	56.6	53.71
Merged-chr19-43512222-3	chr19	43511738	43512738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	B3|SINE|B2	12367.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	354.1	410.1	205.34	336.68	366.21	232.29	255.6	318.8	98.68
Merged-chr10-80678343-3	chr10	80677840	80678840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2047.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	425.04	384.29	282.11	394.04	330.29	326.34	348.54	482.4	241.07
Merged-chr8-111033828-3	chr8	111033360	111034360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146217)	promoter-TSS (NM_146217)	18.0	NM_146217	234734.0	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	280.88	285.69	170.19	232.1	243.98	164.78	266.16	278.57	118.04
Merged-chr6-128843239-3	chr6	128842748	128843748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16933.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	129.86	110.59	93.42	116.73	100.77	83.59	91.89	133.09	68.07
Merged-chr15-99392866-3	chr15	99392352	99393352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026669)	promoter-TSS (NM_026669)	-95.0	NM_026669	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	356.39	277.85	221.99	292.83	227.19	194.52	298.9	344.01	192.35
Merged-chr1-172470188-1	chr1	172469688	172470688	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-5172.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	3.43	5.53	7.4	3.37	1.4	1.61	54.92	62.35	52.46
Merged-chr4-154899167-3	chr4	154898645	154899645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-102.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	53.77	60.36	39.77	82.99	81.17	106.9	81.33	79.15	81.19
Merged-chr4-46602150-3	chr4	46601636	46602636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164804)	promoter-TSS (NM_001164804)	-207.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	48.62	52.07	42.55	41.16	38.72	44.21	30.63	30.07	21.23
Merged-chr19-9914015-3	chr19	9913534	9914534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14501.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	406.16	321.17	137.82	365.7	296.23	174.42	331.64	326.76	170.5
Merged-chr7-121034534-3	chr7	121034034	121035034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021554)	promoter-TSS (NM_021554)	89.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	106.97	105.06	123.02	134.27	128.29	155.93	155.26	108.33	90.56
Merged-chr3-51342666-3	chr3	51342143	51343143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1999.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	28.03	33.64	28.67	39.81	18.66	29.74	31.69	34.93	21.23
Merged-chr13-67128210-3	chr13	67127723	67128723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172392)	promoter-TSS (NM_172392)	-5.0	NM_172392	268670.0	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	84.09	114.74	105.44	89.74	97.03	110.92	111.96	132.65	74.32
Merged-chr4-53187399-3	chr4	53186905	53187905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27510.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	66.36	80.64	56.42	72.19	74.17	73.14	83.44	109.22	53.71
Merged-chr16-28911741-3	chr16	28911282	28912282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	17916.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	70.36	108.28	94.35	37.78	44.78	40.99	80.27	81.8	44.97
Merged-chr17-6828000-3	chr17	6827501	6828501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45221.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	227.11	217.49	141.52	268.54	313.03	200.14	315.8	335.6	98.68
Merged-chr7-24443200-1	chr7	24442700	24443700	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	2482.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	9.72	5.07	0.0	23.62	27.99	38.58	17.96	7.96	14.99
Merged-chr14-16365659-3	chr14	16365131	16366131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009409, exon 1 of 36)	5' UTR (NM_009409, exon 1 of 36)	425.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	316.35	291.68	259.91	253.69	257.51	221.04	241.87	206.49	197.35
Merged-chr15-58823631-3	chr15	58823134	58824134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-207.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	169.9	121.19	167.42	192.29	95.17	110.12	193.28	115.41	92.43
Merged-chr10-128094836-3	chr10	128094364	128095364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 1 of 29)	intron (NM_054078, intron 1 of 29)	2081.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	76.08	47.92	47.17	63.42	31.72	41.8	63.37	61.02	38.1
Merged-chr13-51315724-3	chr13	51315229	51316229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92889.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	35.47	35.48	12.95	49.93	48.05	28.13	43.3	36.7	19.98
Merged-chr1-30950016-5	chr1	30949526	30950526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-271.0	NM_011200	19243.0	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	600.66	560.77	340.38	598.47	590.13	310.26	367.55	503.63	217.96
Merged-chr15-38302395-3	chr15	38301890	38302890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1679.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	35.47	29.95	31.45	37.78	41.99	54.66	38.02	38.03	19.98
Merged-chr4-118360538-1	chr4	118360038	118361038	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	539.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	112.12	85.25	114.69	173.4	226.26	184.87	48.58	45.1	31.85
Merged-chr8-57651752-2	chr8	57651231	57652231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040698)	promoter-TSS (NR_040698)	-22.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	73.22	84.32	71.22	83.66	65.78	45.01	85.55	74.28	37.47
Merged-chrX-38335053-3	chrX	38334534	38335534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290389, exon 8 of 8)	3' UTR (NM_001290389, exon 8 of 8)	18912.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	22.31	31.79	17.57	41.83	20.99	15.27	49.64	50.85	14.99
Merged-chr14-122105042-3	chr14	122104544	122105544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015586, exon 2 of 4)	non-coding (NR_015586, exon 2 of 4)	1930.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	167.61	152.52	102.67	147.76	143.22	115.75	134.14	189.25	92.43
Merged-chr6-124505227-3	chr6	124504729	124505729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181344, intron 2 of 5)	L3|LINE|CR1	-7392.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	34.9	29.03	22.2	35.76	25.19	30.54	33.8	30.07	29.98
Merged-chr11-52099895-3	chr11	52099356	52100356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019411, intron 1 of 6)	intron (NM_019411, intron 1 of 6)	1032.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	457.07	521.61	332.98	460.16	556.08	309.46	370.72	505.4	237.95
Merged-chr6-86556857-3	chr6	86556349	86557349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	B1F1|SINE|Alu	29448.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	20.02	19.35	11.1	26.31	24.26	24.92	35.91	46.87	18.11
Merged-chr14-75834776-2	chr14	75834271	75835271	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10193.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	443.91	490.27	288.59	447.34	427.32	303.83	422.47	511.59	242.32
Merged-chr1-151040565-3	chr1	151040077	151041077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-47142.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	147.59	168.19	123.02	133.59	152.55	125.39	205.96	242.75	77.44
Merged-chr11-103223605-3	chr11	103223097	103224097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 14 of 15)	intron (NM_016896, intron 14 of 15)	-5165.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	28.6	21.66	21.27	44.53	29.86	57.07	67.6	53.06	32.48
Merged-chr5-115301075-3	chr5	115300591	115301591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019682)	promoter-TSS (NM_019682)	-29.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	50.34	33.64	31.45	41.83	22.86	37.78	28.52	26.09	13.12
Merged-chr5-92344637-1	chr5	92344137	92345137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	Lx8|LINE|L1	4252.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	5.15	3.23	9.25	4.05	1.87	1.61	6.34	1.77	5.0
Merged-chr9-102988777-3	chr9	102988274	102989274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19715.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	29.17	27.19	41.62	18.89	27.06	28.94	47.53	34.93	18.11
Merged-chr9-116059261-3	chr9	116058772	116059772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	B3A|SINE|B2	116091.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	34.9	44.24	48.1	44.53	51.32	65.11	47.53	43.33	38.1
Merged-chr11-83663721-3	chr11	83663214	83664214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1130.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	267.72	256.66	135.04	300.25	222.99	166.38	219.69	235.68	116.79
Merged-chr19-55649575-3	chr19	55649079	55650079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	52625.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	171.04	144.23	89.72	153.84	110.56	107.71	145.75	177.75	65.58
Merged-chr11-103697989-3	chr11	103697376	103698376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019650)	promoter-TSS (NM_019650)	152.0	NR_102396	399609.0	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	614.96	652.93	397.73	542.47	684.83	465.39	525.98	545.63	289.78
Merged-chr16-33751729-3	chr16	33751212	33752212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-42325.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	127.0	118.42	86.95	176.1	140.42	144.68	136.25	142.82	79.94
Merged-chr7-63939127-3	chr7	63938632	63939632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021366)	promoter-TSS (NM_021366)	-217.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	434.19	387.06	338.53	404.16	375.07	276.5	314.74	328.97	210.47
Merged-chr8-83699208-3	chr8	83698695	83699695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-16.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	98.97	94.0	95.27	123.47	100.77	97.26	133.08	130.88	61.83
Merged-chr2-144266042-3	chr2	144265519	144266519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030762)	TTS (NR_030762)	183.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	97.25	105.52	84.17	112.0	76.51	97.26	101.39	145.47	56.83
Merged-chr17-64668653-3	chr17	64668135	64669135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 7 of 21)	intron (NM_008549, intron 7 of 21)	66986.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	38.9	33.18	37.0	32.39	34.99	24.11	54.92	36.7	15.61
Merged-chr4-26445055-1	chr4	26444555	26445555	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B|LINE|L1	-98403.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	2.29	4.15	3.7	6.07	3.27	3.22	5.28	6.63	5.62
Merged-chr1-132341915-3	chr1	132341410	132342410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25785.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	167.04	197.22	173.89	155.19	172.61	151.92	219.69	233.91	139.27
Merged-chr18-34777565-3	chr18	34777109	34778109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	CpG	601.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	371.83	385.22	382.01	268.54	236.05	285.34	310.52	241.42	249.19
Merged-chr3-121571696-3	chr3	121571189	121572189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39345.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	27.46	36.86	31.45	29.01	25.19	33.76	53.87	68.09	26.23
Merged-chr4-116597623-3	chr4	116597128	116598128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029450)	promoter-TSS (NR_029450)	2.0	NR_029450	654318.0	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	126.42	132.71	82.32	128.87	142.29	130.21	121.46	110.1	79.94
Merged-chr18-58699314-1	chr18	58698814	58699814	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	39832.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	6.29	2.3	4.62	3.37	5.6	0.8	1.06	2.65	0.0
Merged-chr2-30707495-3	chr2	30706993	30707993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13717.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	58.92	89.85	51.8	64.1	80.24	109.32	44.36	51.73	73.69
Merged-chr6-28622690-3	chr6	28622201	28623201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142353.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	70.36	80.64	57.35	69.5	40.12	43.4	74.99	80.47	36.85
Merged-chr7-16071072-3	chr7	16070568	16071568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347559)	promoter-TSS (NM_001347559)	-777.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	21.17	18.89	6.47	24.29	20.99	33.76	34.85	50.85	20.61
Merged-chr15-99029059-3	chr15	99028543	99029543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009448)	promoter-TSS (NM_009448)	-848.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	172.19	141.0	82.32	129.55	98.9	106.9	130.97	154.32	83.06
Merged-chr18-36793858-3	chr18	36793386	36794386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025594)	promoter-TSS (NM_025594)	-37.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	88.1	120.26	68.45	71.52	96.1	86.01	84.49	76.94	46.84
Merged-chr5-142367585-6	chr5	142367109	142368109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33888.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	196.79	150.22	141.52	203.76	143.68	145.49	241.87	198.09	101.8
Merged-chr6-134172562-3	chr6	134172055	134173055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	MTD|LTR|ERVL-MaLR	136855.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	70.36	78.33	86.95	80.97	54.11	69.13	62.31	86.66	66.82
Merged-chr14-47568478-3	chr14	47567962	47568962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172599)	promoter-TSS (NM_172599)	-28.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	47.48	61.75	35.15	46.56	57.38	38.58	64.43	70.3	42.47
Merged-chr5-32135099-3	chr5	32134598	32135598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1374.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	233.4	205.51	182.22	228.05	175.87	165.58	180.61	165.81	116.16
Merged-chr2-18955929-1	chr2	18955429	18956429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	42192.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	50.34	40.55	27.75	4.05	2.8	3.22	4.22	2.65	1.25
Merged-chr10-117224362-3	chr10	117223873	117224873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026570, exon 1 of 7)	5' UTR (NM_026570, exon 1 of 7)	134.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	279.16	289.37	214.59	249.65	239.79	172.81	246.09	258.23	143.02
Merged-chr4-88714354-3	chr4	88713851	88714851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	8157.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	96.11	82.48	54.57	78.94	93.3	73.95	70.76	67.21	41.84
Merged-chr6-146502250-3	chr6	146501755	146502755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-32.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	59.49	51.15	58.27	66.12	69.98	71.54	52.81	59.25	23.73
Merged-chr12-108760703-3	chr12	108760153	108761153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-32658.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	65.21	89.39	47.17	50.6	102.17	86.01	88.72	105.68	64.95
Merged-chr14-63119717-3	chr14	63119227	63120227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-2735.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	80.09	94.0	30.52	127.52	96.57	133.43	103.51	96.39	46.22
Merged-chrX-74297063-3	chrX	74296585	74297585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018794)	promoter-TSS (NM_018794)	-12.0	NM_001358375	54411.0	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	94.39	96.3	42.55	74.89	79.31	47.42	98.23	81.8	78.07
Merged-chrX-99018083-3	chrX	99017584	99018584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24497.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	24.6	27.19	12.02	22.94	11.66	10.45	13.73	13.71	7.49
Merged-chr11-87433126-3	chr11	87432631	87433631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	5540.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	61.78	57.6	66.6	68.15	47.12	83.59	82.38	86.66	50.59
Merged-chr3-95228753-3	chr3	95228257	95229257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019914)	promoter-TSS (NM_019914)	-80.0	NM_019914	56772.0	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	153.88	113.35	129.49	99.86	70.44	114.14	143.64	139.28	100.55
Merged-chr14-31019531-3	chr14	31019038	31020038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153547)	promoter-TSS (NM_153547)	-167.0	NM_001359855	66923.0	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	185.35	173.72	136.89	188.25	131.56	101.28	209.12	184.38	96.8
Merged-chr12-116405316-3	chr12	116404824	116405824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	-78.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	41.76	44.7	18.5	45.21	34.52	20.9	47.53	37.58	28.73
Merged-chr2-154548909-3	chr2	154548406	154549406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029305)	promoter-TSS (NM_029305)	2.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	102.4	49.76	23.12	212.54	143.22	107.71	171.1	163.6	73.69
Merged-chr6-113343923-3	chr6	113343375	113344375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133926)	promoter-TSS (NM_133926)	47.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	138.44	139.62	110.07	153.16	148.35	139.86	116.18	137.07	79.94
Merged-chr17-70746949-3	chr17	70746451	70747451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	Charlie9|DNA|hAT-Charlie	99826.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	28.03	17.05	11.1	22.94	18.66	18.49	12.67	6.63	2.5
Merged-chr19-33391788-3	chr19	33391284	33392284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167818, intron 1 of 6)	CpG	511.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	156.74	150.22	124.87	185.55	189.87	127.0	130.97	99.05	69.32
Merged-chr1-120527740-3	chr1	120527247	120528247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22723.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	32.04	29.49	37.92	33.06	10.26	9.65	68.65	62.35	26.23
Merged-chr19-11329649-3	chr19	11329166	11330166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027836, intron 2 of 6)	L1MA4|LINE|L1	5029.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	122.99	98.61	46.25	93.79	55.98	62.7	84.49	76.05	41.22
Merged-chr5-88676217-3	chr5	88675689	88676689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178700)	promoter-TSS (NM_178700)	-18.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	132.14	59.44	88.8	124.15	68.58	67.52	94.0	45.99	38.72
Merged-chr12-51691223-4	chr12	51690735	51691735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021710, exon 1 of 6)	5' UTR (NM_021710, exon 1 of 6)	269.0	NM_001329698	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	340.37	365.4	343.16	321.17	335.89	308.65	341.15	248.06	250.44
Merged-chr12-80229169-3	chr12	80228651	80229651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	31220.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	56.06	69.58	49.95	68.82	48.98	66.71	43.3	34.05	53.08
Merged-chr12-102438158-3	chr12	102437658	102438658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1655.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	322.64	321.63	225.69	302.95	295.77	210.59	331.64	376.28	164.25
Merged-chr3-109027757-3	chr3	109027229	109028229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163567)	promoter-TSS (NM_001163567)	-122.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	61.78	46.54	57.35	78.27	26.59	61.09	82.38	38.47	33.72
Merged-chr3-22077139-1	chr3	22076639	22077639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	CpG	487.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	241.41	224.86	271.94	281.36	183.8	187.28	336.92	177.31	136.15
Merged-chr7-141327688-3	chr7	141327177	141328177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282076)	promoter-TSS (NM_001282076)	48.0	NM_016874	54006.0	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	DEAF1, transcription factor	protein-coding	204.22	236.38	194.24	246.27	196.4	194.52	221.8	209.15	120.53
Merged-chr1-36914674-3	chr1	36914173	36915173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	24854.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	60.64	61.75	73.07	41.83	44.32	48.23	41.19	31.84	38.72
Merged-chr6-37419295-3	chr6	37418793	37419793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22855.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	91.53	131.32	98.05	99.18	96.57	120.57	122.52	145.92	73.07
Merged-chr17-70853715-3	chr17	70853224	70854224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-192.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	275.16	221.64	200.71	261.12	220.19	218.63	272.5	249.82	154.26
Merged-chr15-76538794-3	chr15	76538281	76539281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013909)	promoter-TSS (NM_013909)	-35.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	106.97	74.65	111.92	73.54	66.24	87.61	85.55	83.13	71.82
Merged-chr17-80553833-3	chr17	80553341	80554341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	9993.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	20.59	24.42	13.87	27.66	31.72	25.72	50.7	41.56	28.1
Merged-chr12-85348530-3	chr12	85348037	85349037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-9175.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	217.38	202.75	176.67	181.5	169.34	217.83	198.56	232.58	128.03
Merged-chr4-127126028-3	chr4	127125532	127126532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099319)	promoter-TSS (NM_001099319)	-11.0	NM_001099319	100039968.0	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|Zmym6nb	transmembrane protein 35B	protein-coding	37.18	27.19	36.07	24.29	15.86	36.97	26.4	35.37	18.11
Merged-chr5-3199103-3	chr5	3198614	3199614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144779.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	60.64	67.74	24.97	58.7	63.91	30.54	34.85	22.99	34.35
Merged-chr9-107555296-3	chr9	107554794	107555794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019713, intron 1 of 4)	intron (NM_019713, intron 1 of 4)	711.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	323.78	267.25	277.49	309.02	263.11	255.6	313.69	358.16	207.34
Merged-chr11-28911327-1	chr11	28910827	28911827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146015, intron 5 of 10)	URR1A|DNA|hAT-Charlie	58122.0	NM_146015	216616.0	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	5.72	4.61	9.25	0.0	0.93	1.61	3.17	2.65	2.5
Merged-chr11-20934917-3	chr11	20934414	20935414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-103806.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	31.46	38.25	21.27	39.13	32.66	53.85	45.42	56.6	26.23
Merged-chr14-54393377-1	chr14	54392877	54393877	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	16095.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	88.1	80.64	51.8	113.35	85.84	119.76	71.82	58.81	32.48
Merged-chr4-88707311-3	chr4	88706818	88707818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15190.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	132.14	158.05	79.55	118.08	115.69	98.06	101.39	120.27	111.17
Merged-chr17-46705082-3	chr17	46704593	46705593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009358)	promoter-TSS (NM_009358)	-67.0	NM_001357684	21770.0	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	82.38	67.27	89.72	69.5	58.78	86.81	79.21	84.45	55.58
Merged-chrX-12761989-4	chrX	12761490	12762490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012005)	promoter-TSS (NM_012005)	-17.0	NM_001048208	26896.0	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	193.35	167.73	134.12	156.53	130.62	128.61	173.21	130.88	86.18
Merged-chr7-28444806-3	chr7	28444297	28445297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3860.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	127.0	139.62	98.97	143.71	93.3	144.68	128.85	128.67	93.68
Merged-chr8-4335832-3	chr8	4335329	4336329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	10619.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	26.89	54.37	23.12	39.13	26.59	69.13	27.46	36.26	46.22
Merged-chr3-88493097-3	chr3	88492594	88493594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	218.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	140.73	82.02	45.32	153.16	94.7	78.77	67.6	63.23	34.97
Merged-chr14-20794091-3	chr14	20793599	20794599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039138)	promoter-TSS (NM_001039138)	-11.0	NM_178597	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	44.05	34.1	20.35	58.03	25.19	63.5	50.7	32.28	22.48
Merged-chr6-71193374-3	chr6	71192863	71193863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6516.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	52.06	34.1	32.37	35.76	25.19	36.97	44.36	25.2	26.23
Merged-chr11-102432249-3	chr11	102431757	102432757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	1935.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	249.42	228.55	175.74	265.84	187.07	168.8	274.61	306.42	160.5
Merged-chr15-33184070-1	chr15	33183570	33184570	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	100941.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	48.62	65.89	66.6	46.56	50.38	64.3	63.37	74.28	69.32
Merged-chr13-113754838-1	chr13	113754338	113755338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-39670.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	56.63	40.55	19.42	5.4	6.53	4.02	4.22	1.33	2.5
Merged-chr5-38039277-3	chr5	38038789	38039789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	59.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	76.66	129.48	81.4	101.88	90.5	55.46	87.66	64.56	34.35
Merged-chr7-143296667-3	chr7	143296186	143297186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_001461)	promoter-TSS (NR_001461)	-139.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	110.98	105.06	87.87	115.38	122.23	95.65	97.17	102.14	61.2
Merged-chr5-18036412-3	chr5	18035925	18036925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73855.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	38.33	38.25	11.1	41.83	51.78	51.44	26.4	31.39	13.74
Merged-chr4-40854145-3	chr4	40853637	40854637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022305, exon 1 of 6)	5' UTR (NM_022305, exon 1 of 6)	400.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	154.45	80.64	104.52	122.8	78.37	104.49	138.36	106.56	62.45
Merged-chr3-130060832-3	chr3	130060342	130061342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207209)	promoter-TSS (NM_207209)	65.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	241.41	139.62	166.49	180.82	80.71	140.66	219.69	68.09	97.43
Merged-chr3-137848546-3	chr3	137848044	137849044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15943.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	28.6	19.81	16.65	51.95	24.72	32.15	19.01	13.71	8.74
Merged-chr19-5649666-3	chr19	5649169	5650169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	12179.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	237.4	233.16	168.34	261.12	205.73	213.0	199.62	262.21	155.51
Merged-chr15-103163373-3	chr15	103162877	103163877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	-93.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	17.16	12.44	6.47	17.54	14.46	22.51	31.69	16.8	15.61
Merged-chr5-53999220-3	chr5	53998746	53999746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	723.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	135.0	146.07	102.67	87.71	97.97	96.45	139.42	84.01	80.56
Merged-chr19-23273880-3	chr19	23273370	23274370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153808)	promoter-TSS (NM_153808)	27.0	NM_153808	226026.0	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	21.17	21.66	12.95	39.81	20.99	22.51	34.85	18.13	17.49
Merged-chr14-103051560-3	chr14	103051070	103052070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008392, intron 4 of 4)	intron (NM_008392, intron 4 of 4)	4558.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	6.29	3.23	3.7	3.37	2.8	0.0	3.17	3.98	3.75
Merged-chr9-52048098-3	chr9	52047588	52048588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001104617, exon 1 of 11)	5' UTR (NM_001104617, exon 1 of 11)	147.0	NM_001104617	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	152.74	155.28	106.37	143.71	107.76	159.95	120.41	87.99	70.57
Merged-chr5-73548397-3	chr5	73547903	73548903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190733, intron 8 of 9)	intron (NM_001190733, intron 8 of 9)	57377.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	95.53	77.87	37.92	49.25	51.78	30.54	31.69	34.49	26.23
Merged-chr13-49371657-3	chr13	49371132	49372132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039179, intron 2 of 6)	intron (NM_001039179, intron 2 of 6)	30083.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	27.46	21.2	28.67	32.39	17.73	33.76	26.4	17.69	19.98
Merged-chr2-38483502-3	chr2	38482975	38483975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28222.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	171.04	172.79	125.79	206.46	123.62	156.74	149.98	174.21	112.42
Merged-chr1-173419140-3	chr1	173418638	173419638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1466.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	133.86	153.9	85.1	122.8	93.77	126.19	117.24	129.55	86.18
Merged-chr17-5569787-3	chr17	5569304	5570304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	77204.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	363.25	340.98	197.94	499.97	453.45	301.42	368.61	500.53	185.48
Merged-chr3-103809475-3	chr3	103808984	103809984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163552)	promoter-TSS (NM_001163552)	-33.0	NM_001163552	67489.0	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	220.81	238.23	202.56	184.2	187.07	154.33	205.96	200.74	131.78
Merged-chr9-66795578-3	chr9	66795135	66796135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177583)	promoter-TSS (NM_177583)	-212.0	NM_177583	208117.0	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	173.33	152.52	119.32	178.13	174.94	167.19	186.94	215.78	83.06
Merged-chr8-19980012-3	chr8	19979514	19980514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	CpG	250438.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	25.17	14.28	17.57	38.46	23.33	45.82	14.79	7.52	6.87
Merged-chr9-111119387-3	chr9	111118882	111119882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 1 of 13)	intron (NM_027742, intron 1 of 13)	1271.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	99.54	102.29	41.62	173.4	137.62	76.36	111.96	107.0	39.97
Merged-chr8-70744454-3	chr8	70743953	70744953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	-10226.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	62.93	39.63	12.95	111.33	99.37	78.77	46.47	47.31	20.61
Merged-chr17-31277378-3	chr17	31276870	31277870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025290)	promoter-TSS (NM_025290)	-14.0	NM_025290	22092.0	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	4.58	2.76	1.85	4.05	4.2	3.22	5.28	2.65	6.25
Merged-chr6-47788528-3	chr6	47788006	47789006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15146.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	372.41	299.05	154.47	276.63	222.06	203.36	368.61	302.0	160.5
Merged-chr6-71270801-3	chr6	71270297	71271297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354706)	promoter-TSS (NM_001354706)	-874.0	NR_106192	102465900.0		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	232.25	281.08	168.34	212.54	225.32	172.01	250.32	322.34	198.6
Merged-chr3-98024575-3	chr3	98024082	98025082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	11044.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	115.55	126.25	78.62	121.45	108.23	63.5	88.72	99.05	64.95
Merged-chr10-75300022-3	chr10	75299486	75300486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-16891.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	20.02	13.82	12.02	26.99	17.73	21.7	36.97	30.51	18.11
Merged-chr17-86972052-3	chr17	86971572	86972572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8961.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	123.56	115.2	42.55	136.97	109.63	74.75	153.15	147.68	71.2
Merged-chr2-91237092-3	chr2	91236594	91237594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015464)	promoter-TSS (NR_015464)	-28.0	NM_028119	107986.0	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	70.36	105.06	94.35	84.34	65.78	90.83	81.33	98.16	62.45
Merged-chr3-16006436-3	chr3	16005937	16006937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081687)	promoter-TSS (NM_001081687)	-105.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	89.24	110.13	99.89	76.24	83.97	73.14	92.94	111.43	66.82
Merged-chr15-89075988-3	chr15	89075492	89076492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040417)	promoter-TSS (NR_040417)	-72.0	NM_026485	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	204.8	203.21	172.97	170.7	168.88	184.87	190.11	185.71	106.79
Merged-chr17-17294354-3	chr17	17293858	17294858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324550)	promoter-TSS (NM_001324550)	-85.0	NM_001324550	100862203.0	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	50.34	41.47	46.25	34.41	27.99	34.56	58.09	46.43	39.97
Merged-chr2-14239648-3	chr2	14239146	14240146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	10232.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	70.36	71.42	71.22	70.85	43.39	62.7	87.66	93.3	36.85
Merged-chr1-39762188-3	chr1	39761666	39762666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41177.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	29.75	45.62	33.3	51.95	41.52	72.34	34.85	42.89	31.23
Merged-chrX-152336717-3	chrX	152336148	152337148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001358369)	TTS (NM_001358369)	5836.0	NM_029836	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	53.77	39.17	46.25	41.83	41.05	29.74	40.14	51.73	28.1
Merged-chr2-170436484-3	chr2	170435989	170436989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8644.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	9.15	5.99	0.0	8.77	2.33	1.61	7.39	4.42	6.25
Merged-chr13-55445161-3	chr13	55444703	55445703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011938)	promoter-TSS (NM_011938)	-128.0	NM_001286066	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	147.59	104.6	86.02	105.93	81.17	102.08	138.36	101.7	96.18
Merged-chr1-92921002-3	chr1	92920422	92921422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181405)	TTS (NM_181405)	10097.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	28.6	19.35	25.9	25.64	24.72	25.72	24.29	15.48	9.99
Merged-chr10-118012145-3	chr10	118011639	118012639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86680.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	69.79	58.06	25.9	96.48	81.64	41.8	72.88	81.8	28.73
Merged-chr13-58458998-3	chr13	58458504	58459504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55661.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	26.89	15.21	18.5	28.34	18.19	17.68	12.67	14.59	19.36
Merged-chr12-81484975-3	chr12	81484476	81485476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132134)	promoter-TSS (NR_132134)	-125.0	NR_132134	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	145.3	205.97	140.59	141.02	146.48	120.57	215.46	198.09	102.42
Merged-chr10-44659716-3	chr10	44659201	44660201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200953.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	112.69	121.65	84.17	188.25	147.88	131.82	149.98	145.03	88.06
Merged-chr18-4354696-3	chr18	4354185	4355185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1138.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	194.5	249.28	135.97	197.69	189.4	183.26	184.83	256.01	132.4
Merged-chr6-29468166-3	chr6	29467661	29468661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025381, intron 1 of 1)	intron (NM_025381, intron 1 of 1)	378.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	208.23	152.06	115.62	247.62	210.4	175.23	207.01	202.51	109.92
Merged-chr9-116137021-3	chr9	116136512	116137512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	38351.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	153.88	142.84	53.65	221.31	183.8	86.01	82.38	75.61	43.09
Merged-chr10-117412835-3	chr10	117412345	117413345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	34590.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	125.28	74.65	51.8	129.55	79.31	73.14	105.62	126.9	43.09
Merged-chr8-113656339-3	chr8	113655856	113656856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001048145)	TTS (NM_001048145)	13143.0	NM_001048145	668110.0	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	94.39	77.87	71.22	72.19	47.58	57.07	57.03	65.44	71.82
Merged-chr8-121907767-3	chr8	121907266	121908266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033485)	promoter-TSS (NM_001033485)	-67.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	20.59	12.44	5.55	12.82	20.99	22.51	16.9	3.98	2.5
Merged-chr3-103102599-3	chr3	103102078	103103078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24978.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	20.02	5.07	8.32	34.41	22.39	24.92	6.34	7.52	7.49
Merged-chr16-45561963-1	chr16	45561463	45562463	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198106, intron 13 of 27)	intron (NM_198106, intron 13 of 27)	26697.0	NM_198106	208169.0	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	2.86	1.38	0.0	2.02	1.4	12.86	7.39	5.75	2.5
Merged-chr1-95674231-1	chr1	95673731	95674731	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-6637.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	10.87	9.22	3.7	11.47	7.93	1.61	8.45	2.65	3.75
Merged-chr16-91611421-3	chr16	91610921	91611921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7578.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	100.68	75.57	46.25	107.95	59.71	53.05	200.68	236.56	64.33
Merged-chr1-135283079-3	chr1	135282572	135283572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1012.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	194.5	228.09	185.92	226.71	193.6	206.57	226.02	242.31	196.73
Merged-chr2-156111792-3	chr2	156111216	156112216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029397, intron 1 of 2)	CpG	249.0	NM_170598	75710.0	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	212.8	211.04	145.22	200.39	181.01	159.15	205.96	150.34	96.8
Merged-chr16-91385753-3	chr16	91385266	91386266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 3 of 7)	intron (NM_001347258, intron 3 of 7)	12983.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	152.74	118.88	115.62	158.56	76.04	123.78	148.92	133.98	118.04
Merged-chr2-79180908-3	chr2	79180392	79181392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74534.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	46.34	27.65	19.42	36.43	37.32	36.97	34.85	28.3	24.36
Merged-chr2-58197056-3	chr2	58196534	58197534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	33060.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	27.46	17.97	1.85	31.71	14.93	16.08	23.24	23.88	28.1
Merged-chr5-33335455-3	chr5	33334943	33335943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021500)	promoter-TSS (NM_021500)	-129.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	112.69	145.61	121.17	146.41	114.76	135.84	148.92	121.15	94.93
Merged-chr8-83693957-3	chr8	83693448	83694448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	113.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	70.36	75.11	78.62	78.94	51.32	81.18	67.6	87.99	56.83
Merged-chr11-103418729-3	chr11	103418230	103419230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6066.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	133.86	65.89	92.5	122.8	46.18	90.02	193.28	163.6	79.94
Merged-chr17-25920035-3	chr17	25919546	25920546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139154)	promoter-TSS (NM_139154)	-332.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	81.23	47.0	53.65	67.47	46.65	65.11	94.0	55.71	45.59
Merged-chr16-24670129-5	chr16	24669599	24670599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 6 of 12)	intron (NM_178665, intron 6 of 12)	-51756.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	38.9	66.81	42.55	46.56	41.99	81.99	58.09	33.6	31.85
Merged-chr7-64400988-2	chr7	64400487	64401487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	8365.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	5.72	8.29	3.7	32.39	26.59	22.51	17.96	13.27	9.99
Merged-chr4-145234022-3	chr4	145233515	145234515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	12855.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	203.65	130.86	125.79	153.84	97.03	131.02	178.5	156.97	138.02
Merged-chr9-74952937-3	chr9	74952448	74953448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	68.0	NR_153342	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	108.12	112.89	86.02	182.17	183.34	109.32	207.01	206.93	125.53
Merged-chr12-111538044-3	chr12	111537569	111538569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173363)	promoter-TSS (NM_173363)	-32.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	517.14	387.98	317.26	535.05	355.95	279.72	414.02	317.48	224.21
Merged-chr1-143916708-3	chr1	143916207	143917207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87442.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	147.02	165.42	98.97	92.44	95.17	98.06	105.62	96.83	79.94
Merged-chr2-174436423-3	chr2	174435878	174436878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	2661.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	85.24	69.12	38.85	79.62	63.45	51.44	78.16	59.25	41.22
Merged-chr2-25628039-3	chr2	25627525	25628525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-51.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	106.4	82.48	111.92	140.34	128.29	140.66	207.01	191.46	65.58
Merged-chr11-73324662-3	chr11	73324163	73325163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023113)	promoter-TSS (NM_023113)	-26.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	349.52	446.5	177.59	412.25	425.92	274.9	341.15	453.22	194.23
Merged-chr11-17258024-2	chr11	17257539	17258539	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330649, intron 1 of 4)	intron (NM_001330649, intron 1 of 4)	351.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	240.83	366.32	233.09	288.78	366.21	228.28	285.17	357.71	195.48
Merged-chr13-94358353-1	chr13	94357853	94358853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009680)	promoter-TSS (NM_009680)	570.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	140.73	131.32	110.99	119.43	132.49	142.27	115.12	124.69	70.57
Merged-chr10-99268461-1	chr10	99267961	99268961	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026268)	TTS (NM_026268)	5230.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	93.82	81.56	74.92	69.5	59.25	61.89	80.27	76.49	58.08
Merged-chr8-85432866-3	chr8	85432373	85433373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025722)	promoter-TSS (NM_025722)	-32.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	80.66	66.35	59.2	73.54	42.92	108.51	106.67	62.35	43.72
Merged-chr9-121374596-3	chr9	121374098	121375098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	7640.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	10.3	11.52	14.8	15.52	10.73	16.08	15.84	9.73	10.62
Merged-chr2-164936158-3	chr2	164935668	164936668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-12051.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	19.45	10.14	1.85	10.12	7.46	8.04	12.67	14.15	6.25
Merged-chr14-31385082-3	chr14	31384567	31385567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32610.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	84.66	101.37	96.2	153.16	103.56	123.78	160.54	156.53	96.18
Merged-chr1-185362994-3	chr1	185362517	185363517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029735)	promoter-TSS (NM_029735)	-27.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	495.97	468.62	330.21	460.83	431.05	263.64	364.38	432.88	201.72
Merged-chr7-80901263-3	chr7	80900769	80901769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027976)	promoter-TSS (NR_027976)	0.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	41.76	33.18	36.07	42.51	43.39	38.58	36.97	31.39	36.85
Merged-chr6-145274311-3	chr6	145273810	145274810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23758.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	38.33	30.41	12.02	47.23	27.99	20.9	31.69	19.01	36.22
Merged-chr11-114965640-3	chr11	114965149	114966149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5232.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	66.93	31.33	37.92	136.29	71.38	86.01	111.96	91.97	65.58
Merged-chr8-105340003-3	chr8	105339506	105340506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	7964.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	133.29	91.24	77.7	107.28	80.71	78.77	160.54	172.89	58.08
Merged-chr5-33782840-3	chr5	33782346	33783346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-142.0	NM_019694	56384.0	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	92.67	84.32	61.97	97.16	69.51	103.69	111.96	62.79	53.71
Merged-chr13-108335439-3	chr13	108334955	108335955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	19118.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	52.06	27.65	7.4	46.56	16.79	11.25	11.62	8.84	6.87
Merged-chr16-49929906-3	chr16	49929410	49930410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25920.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	44.62	31.33	12.95	53.3	30.79	19.29	57.03	41.12	27.48
Merged-chr6-65042699-3	chr6	65042191	65043191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355250)	promoter-TSS (NM_001355250)	100.0	NM_001355249	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	307.76	300.43	156.32	251.67	266.84	161.56	265.1	173.33	106.17
Merged-chr12-119483459-3	chr12	119482955	119483955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	40045.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	15.45	15.21	1.85	15.52	18.66	6.43	12.67	10.17	6.25
Merged-chr1-88589211-2	chr1	88588717	88589717	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	37700.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	38.33	37.78	41.62	116.05	83.04	109.32	128.85	91.09	72.45
Merged-chr3-30602438-3	chr3	30601974	30602974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030557, exon 1 of 8)	5' UTR (NM_030557, exon 1 of 8)	387.0	NM_001289622	80732.0	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	300.9	327.62	252.51	275.28	239.79	228.28	264.05	349.75	168.62
Merged-chr8-111052368-3	chr8	111051857	111052857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146217, intron 15 of 20)	intron (NM_146217, intron 15 of 20)	-3982.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	65.79	64.05	63.82	33.06	35.45	49.03	44.36	41.56	61.83
Merged-chr2-5769884-3	chr2	5769397	5770397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55135.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	36.61	52.53	33.3	24.29	23.79	42.6	28.52	37.58	24.98
Merged-chr4-149843112-3	chr4	149842626	149843626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-68859.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	8.58	15.21	24.05	26.31	16.33	20.9	38.02	23.88	15.61
Merged-chr6-146501586-3	chr6	146501050	146502050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	673.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	51.48	63.13	54.57	58.03	77.91	95.65	53.87	64.11	21.86
Merged-chr3-83845370-3	chr3	83844862	83845862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3754.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	53.2	42.85	29.6	68.15	44.32	54.66	41.19	47.31	36.22
Merged-chr2-145823022-3	chr2	145822531	145823531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	36915.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	295.18	327.16	156.32	335.33	310.69	240.33	308.41	438.63	188.61
Merged-chr17-78205202-1	chr17	78204702	78205702	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015800, intron 1 of 16)	intron (NM_015800, intron 1 of 16)	4954.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	9.72	6.45	0.0	7.42	3.27	3.22	6.34	7.07	3.75
Merged-chr2-45116781-1	chr2	45116281	45117281	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	661.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	187.06	185.7	164.64	208.49	199.2	187.28	234.47	240.98	185.48
Merged-chrX-102644263-3	chrX	102643757	102644757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008832)	promoter-TSS (NM_008832)	-11.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	74.94	67.74	43.47	47.23	41.05	29.74	48.58	43.77	36.85
Merged-chr17-27935253-3	chr17	27934747	27935747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	MTC|LTR|ERVL-MaLR	25941.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	93.82	58.06	44.4	117.4	62.51	62.7	64.43	55.27	41.84
Merged-chr3-69205808-3	chr3	69205318	69206318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16601.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	168.18	147.45	84.17	218.61	182.87	153.52	161.6	187.92	87.43
Merged-chr11-54801965-3	chr11	54801468	54802468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14265.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	74.37	51.61	20.35	91.09	45.25	64.3	81.33	71.19	41.84
Merged-chr2-23052737-3	chr2	23052219	23053219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12478.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	51.48	41.47	32.37	51.28	42.92	48.23	54.92	53.5	39.97
Merged-chr2-70871033-3	chr2	70870525	70871525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45545.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	25.17	17.05	22.2	25.64	17.26	22.51	22.18	22.11	14.99
Merged-chr12-104742471-3	chr12	104741957	104742957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148948, intron 1 of 26)	intron (NM_148948, intron 1 of 26)	9495.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	16.02	16.59	30.52	7.42	7.93	9.65	14.79	10.17	14.36
Merged-chr10-128748456-3	chr10	128747963	128748963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253704)	promoter-TSS (NM_001253704)	8.0	NM_001253704	78428.0	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	204.22	261.26	172.04	221.31	238.39	204.16	264.05	291.39	162.38
Merged-chr4-55349828-3	chr4	55349334	55350334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009011)	promoter-TSS (NM_009011)	-208.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	262.0	192.15	183.14	219.96	198.27	140.66	209.12	162.28	121.78
Merged-chr17-35089288-3	chr17	35088802	35089802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178592)	promoter-TSS (NM_178592)	11.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	370.69	318.86	258.06	326.56	273.37	204.16	320.02	314.38	161.75
Merged-chr9-13827569-3	chr9	13827074	13828074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310721)	promoter-TSS (NM_001310721)	-142.0	NM_001358259	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	186.49	286.15	201.64	170.7	242.58	203.36	176.38	191.46	161.13
Merged-chr9-61706167-1	chr9	61705667	61706667	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	208343.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	37.76	28.11	21.27	70.17	57.85	31.35	39.08	38.47	26.23
Merged-chr12-100159748-3	chr12	100159268	100160268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183155)	promoter-TSS (NM_183155)	-115.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	56.06	58.06	48.1	51.28	68.11	64.3	81.33	65.44	41.22
Merged-chr8-126591269-1	chr8	126590769	126591769	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	2167.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	246.56	235.46	140.59	257.07	257.98	183.26	219.69	277.68	129.28
Merged-chr4-129049175-3	chr4	129048666	129049666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9105.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	88.67	88.01	61.05	74.89	59.71	70.73	71.82	66.33	46.84
Merged-chr1-135284042-3	chr1	135283538	135284538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145417)	promoter-TSS (NM_145417)	46.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	211.09	212.42	261.76	198.37	200.6	267.66	181.66	169.79	177.37
Merged-chr15-75086425-3	chr15	75085942	75086942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25495.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	310.05	391.67	504.1	483.77	604.59	673.57	289.39	277.68	405.32
Merged-chr1-171294851-3	chr1	171294336	171295336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025388, intron 1 of 6)	intron (NM_025388, intron 1 of 6)	166.0	NM_001360932	66155.0	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	291.18	259.42	190.54	323.86	235.59	238.73	294.68	255.57	179.86
Merged-chr15-31531100-3	chr15	31530606	31531606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172606)	promoter-TSS (NM_172606)	-69.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	262.57	175.1	197.02	253.69	137.62	156.74	232.36	108.77	109.92
Merged-chr16-35904574-3	chr16	35904071	35905071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33189.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	92.1	72.34	85.1	70.85	32.66	80.38	113.01	96.39	75.57
Merged-chr10-10429840-3	chr10	10429357	10430357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 9 of 36)	intron (NM_001127353, intron 9 of 36)	42457.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	125.85	220.72	150.77	129.55	180.07	158.35	217.57	246.29	113.04
Merged-chr10-86124334-3	chr10	86123827	86124827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 7 of 13)	intron (NM_013722, intron 7 of 13)	28473.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	88.67	58.52	87.87	29.01	32.19	28.13	97.17	108.77	57.46
Merged-chr4-156216771-3	chr4	156216279	156217279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172417, exon 2 of 4)	5' UTR (NM_172417, exon 2 of 4)	852.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	85.24	59.9	35.15	90.41	58.78	30.54	90.83	55.27	36.22
Merged-chr16-91562182-3	chr16	91561675	91562675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 6 of 6)	intron (NM_008338, intron 6 of 6)	15081.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	73.79	47.46	58.27	83.66	63.45	74.75	108.79	118.94	68.7
Merged-chr4-32251183-3	chr4	32250687	32251687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166248.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	291.75	336.37	161.87	279.33	270.11	200.95	215.46	254.25	142.39
Merged-chr15-79347498-3	chr15	79347014	79348014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304831)	promoter-TSS (NM_001304831)	-6.0	NM_010755	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	241.41	172.33	52.72	227.38	143.22	55.46	163.71	112.75	49.34
Merged-chr11-21024705-3	chr11	21024199	21025199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66625.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	36.61	39.63	36.07	44.53	29.39	30.54	33.8	45.1	33.1
Merged-chr14-33185544-3	chr14	33185026	33186026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146022)	promoter-TSS (NM_001146022)	-460.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	240.26	242.83	176.67	267.86	286.9	235.51	293.62	279.01	139.89
Merged-chr5-114766630-3	chr5	114766095	114767095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 3 of 18)	intron (NM_001077359, intron 3 of 18)	6896.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	35.47	30.41	26.82	34.41	40.59	58.68	31.69	17.69	25.61
Merged-chr10-71348518-3	chr10	71348015	71349015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	CpG	752.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	145.3	129.02	161.87	187.57	165.61	199.34	165.82	152.99	102.42
Merged-chr10-41960014-3	chr10	41959498	41960498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	58384.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	19.45	19.35	15.72	14.17	11.66	23.31	26.4	32.72	18.74
Merged-chr14-103070213-3	chr14	103069736	103070736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033242)	promoter-TSS (NM_001033242)	20.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	273.44	245.14	191.47	301.6	243.05	198.54	312.63	337.82	176.12
Merged-chr6-35133824-3	chr6	35133323	35134323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164411)	promoter-TSS (NM_001164411)	-86.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	126.42	108.75	66.6	132.24	78.84	120.57	115.12	99.49	61.83
Merged-chr1-74713118-3	chr1	74712607	74713607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-428.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	94.96	122.57	90.65	103.91	109.63	133.43	110.9	127.79	73.07
Merged-chr16-39053508-1	chr16	39053008	39054008	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135442.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.29	4.61	3.7	6.07	6.06	9.65	2.11	1.33	6.25
Merged-chrX-105079755-3	chrX	105079317	105080317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026312)	promoter-TSS (NM_026312)	61.0	NM_026312	67683.0	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	62.35	77.41	21.27	85.01	85.37	49.03	85.55	81.8	43.09
Merged-chr19-5777565-3	chr19	5777050	5778050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-6131.0	NR_155264	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	55.49	15.21	21.27	30.36	14.46	12.86	27.46	24.32	8.74
Merged-chr10-40258162-3	chr10	40257665	40258665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026113)	promoter-TSS (NM_026113)	-453.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	145.87	165.88	137.82	138.32	113.36	126.19	191.17	193.23	119.91
Merged-chr19-46522657-3	chr19	46522178	46523178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	21030.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	291.75	198.6	181.29	319.14	144.15	198.54	268.27	266.63	114.29
Merged-chr14-30457963-3	chr14	30457451	30458451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131095)	promoter-TSS (NR_131095)	-85.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	15.45	16.59	25.9	25.64	12.6	30.54	14.79	17.69	6.25
Merged-chr10-60752831-3	chr10	60752338	60753338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023596)	promoter-TSS (NM_023596)	-56.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	75.51	54.83	79.55	64.1	74.17	108.51	119.35	90.64	53.71
Merged-chr14-54383490-3	chr14	54383012	54384012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	22671.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	291.75	319.78	162.79	333.99	274.77	225.86	232.36	317.03	93.05
Merged-chr14-17414447-3	chr14	17413953	17414953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-246507.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	68.07	81.56	48.1	70.85	83.04	58.68	58.09	65.88	85.56
Merged-chr19-59943545-3	chr19	59943039	59944039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033172)	promoter-TSS (NM_001033172)	115.0	NM_001164367	74998.0	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	252.85	190.76	169.27	234.8	181.47	180.85	230.25	139.72	106.17
Merged-chr11-3266448-3	chr11	3265943	3266943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007879)	promoter-TSS (NM_007879)	20.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	128.71	120.26	66.6	112.68	83.97	77.97	130.97	92.41	53.71
Merged-chr1-120073898-3	chr1	120073481	120074481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019432)	promoter-TSS (NM_019432)	-201.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	293.46	336.83	242.34	269.21	289.24	220.24	365.44	475.77	185.48
Merged-chr7-5014354-3	chr7	5013890	5014890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011813)	promoter-TSS (NM_011813)	-137.0	NM_001360242	23877.0	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	154.45	206.89	123.94	171.38	156.28	155.13	199.62	174.21	113.66
Merged-chr1-87213903-3	chr1	87213400	87214400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347083)	promoter-TSS (NM_001347083)	-11.0	NM_001347083	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	320.92	198.6	175.74	286.75	155.35	167.19	234.47	147.24	102.42
Merged-chr12-3894748-3	chr12	3894227	3895227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	2983.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	125.28	103.22	79.55	209.84	203.86	132.63	115.12	140.61	49.96
Merged-chr4-141552612-3	chr4	141552091	141553091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6429.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	28.03	19.81	41.62	6.75	3.27	6.43	30.63	19.46	8.74
Merged-chrX-71285651-3	chrX	71285141	71286141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164192, intron 7 of 13)	intron (NM_001164192, intron 7 of 13)	70567.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	86.38	129.94	72.15	82.32	60.65	61.89	98.23	93.74	58.08
Merged-chr16-75961669-3	chr16	75961152	75962152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39132.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	124.14	107.82	90.65	64.77	46.65	57.07	83.44	95.95	58.08
Merged-chr11-48816485-3	chr11	48815993	48816993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145377, exon 1 of 6)	exon (NM_145377, exon 1 of 6)	898.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	161.89	100.45	143.37	136.97	90.97	110.12	130.97	114.52	115.54
Merged-chr12-119357484-3	chr12	119356978	119357978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85932.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	77.23	86.63	60.12	35.09	34.99	36.97	52.81	45.1	36.22
Merged-chr7-128745376-3	chr7	128744863	128745863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029982, intron 1 of 18)	L2c|LINE|L2	493.0	NM_001029982	207352.0	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	120.13	113.81	77.7	116.73	94.23	92.44	99.28	98.6	69.95
Merged-chr7-109519058-3	chr7	109518546	109519546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011975)	promoter-TSS (NM_011975)	-149.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	322.64	339.6	220.14	271.91	312.56	276.5	291.51	295.37	211.71
Merged-chr7-66060548-3	chr7	66060048	66061048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152094, exon 1 of 8)	non-coding (NR_152094, exon 1 of 8)	212.0	NM_021336	68981.0	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	41.76	35.94	33.3	39.13	62.51	45.82	34.85	18.57	22.48
Merged-chr12-24651227-3	chr12	24650731	24651731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178357)	promoter-TSS (NM_178357)	-140.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	270.58	249.75	257.14	246.95	314.89	264.45	253.48	183.5	144.89
Merged-chr4-134362794-1	chr4	134362294	134363294	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355493, intron 4 of 10)	intron (NM_001355493, intron 4 of 10)	9753.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	1.72	0.92	8.32	3.37	3.73	3.22	0.0	5.31	4.37
Merged-chr11-120098828-3	chr11	120098318	120099318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	-87.0	NM_183137	78777.0	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	116.7	130.4	100.82	95.81	118.03	143.07	90.83	139.28	74.94
Merged-chr8-119857985-3	chr8	119857475	119858475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4330.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	23.45	10.6	1.85	11.47	13.06	6.43	13.73	12.38	14.99
Merged-chr8-25976764-3	chr8	25976309	25977309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029884)	promoter-TSS (NM_029884)	-65.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	303.19	230.85	231.24	290.8	225.79	233.9	301.01	215.78	151.14
Merged-chr12-100426468-3	chr12	100425959	100426959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	94363.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	78.37	56.22	49.95	87.04	64.84	75.56	45.42	49.96	26.23
Merged-chr12-112675437-3	chr12	112674942	112675942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331107)	promoter-TSS (NM_001331107)	-558.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	19.45	24.42	14.8	18.89	16.33	25.72	29.57	21.22	14.99
Merged-chr10-127587882-3	chr10	127587382	127588382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33266.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	78.94	41.47	47.17	60.05	41.05	79.58	54.92	53.94	33.72
Merged-chr1-16659626-3	chr1	16659133	16660133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	2081.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	41.19	40.09	31.45	31.04	31.26	40.99	31.69	33.6	31.85
Merged-chr1-37586316-3	chr1	37585835	37586835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45319.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	157.31	149.29	97.12	109.98	79.77	106.9	100.34	94.62	75.57
Merged-chr1-86527427-3	chr1	86526917	86527917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	CpG-365	860.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	370.69	352.04	374.61	317.12	330.29	328.75	296.79	322.78	255.43
Merged-chr13-112131310-2	chr13	112130764	112131764	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157187.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.72	2.3	0.0	23.62	33.59	46.62	21.12	24.32	23.73
Merged-chrX-73911793-3	chrX	73911301	73912301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162423)	promoter-TSS (NM_001162423)	-503.0	NM_001162424	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	92.67	105.98	88.8	83.66	70.91	88.42	104.56	131.32	68.7
Merged-chr18-53229371-3	chr18	53228863	53229863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16299.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	29.75	42.39	48.1	50.6	53.65	40.19	48.58	60.13	13.12
Merged-chr5-107597622-3	chr5	107597144	107598144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163461)	promoter-TSS (NM_001163461)	-5.0	NM_001161739	170823.0	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	40.04	34.56	41.62	54.65	44.32	51.44	68.65	46.87	43.09
Merged-chr10-44381687-3	chr10	44381198	44382198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22022.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	207.08	279.7	146.14	229.4	215.53	178.44	166.88	312.61	113.66
Merged-chr15-11995299-5	chr15	11994808	11995808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011294, intron 1 of 4)	CpG	699.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	288.32	252.51	216.44	188.92	172.14	162.37	212.29	154.32	96.18
Merged-chr17-34592178-3	chr17	34591647	34592647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-324.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	63.5	42.85	61.05	51.28	34.52	77.97	61.26	33.16	53.08
Merged-chr2-167932295-3	chr2	167931802	167932802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-25.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	347.81	248.82	205.34	324.54	208.06	228.28	257.71	242.75	168.0
Merged-chr13-115210843-1	chr13	115210343	115211343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-108879.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	9.15	5.99	3.7	5.4	1.4	0.8	5.28	0.44	2.5
Merged-chr2-5613817-3	chr2	5613305	5614305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	62241.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	30.89	33.18	42.55	43.86	33.59	51.44	21.12	24.32	15.61
Merged-chr11-98150497-3	chr11	98149997	98150997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-881.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	48.62	68.66	73.07	75.57	69.04	89.22	72.88	82.69	79.32
Merged-chr16-24103052-3	chr16	24102555	24103555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20365.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	19.45	20.74	12.95	22.94	13.53	12.86	11.62	9.29	3.75
Merged-chr8-109868511-3	chr8	109868023	109869023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122594)	promoter-TSS (NM_001122594)	-80.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	100.68	88.93	77.7	87.71	75.11	79.58	123.57	70.3	58.71
Merged-chr8-72318965-3	chr8	72318479	72319479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008452)	promoter-TSS (NM_008452)	-83.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	215.09	121.65	118.39	161.26	96.57	123.78	148.92	105.68	75.57
Merged-chr16-11000043-3	chr16	10999547	11000547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6926.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	221.38	165.42	157.24	204.44	128.76	145.49	178.5	173.77	92.43
Merged-chr15-85859603-3	chr15	85859049	85860049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168672)	promoter-TSS (NM_001168672)	-158.0	NM_001168672	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	37.76	40.09	31.45	36.43	38.25	29.74	40.14	33.16	35.6
Merged-chr12-100396868-3	chr12	100396370	100397370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120261.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	26.31	30.41	16.65	27.66	19.59	20.9	30.63	20.34	21.23
Merged-chr5-132467218-1	chr5	132466718	132467718	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	75125.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	1.72	1.38	7.4	5.4	4.67	6.43	3.17	1.77	5.0
Merged-chr9-57910951-3	chr9	57910452	57911452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122873)	promoter-TSS (NM_001122873)	-34.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	135.58	132.25	132.27	155.19	133.89	140.66	197.51	169.79	69.32
Merged-chr2-180070583-3	chr2	180070023	180071023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083328)	promoter-TSS (NM_001083328)	-70.0	NM_001083328	52856.0	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	118.42	119.8	95.27	118.08	138.09	129.41	138.36	149.45	78.07
Merged-chr7-4239358-3	chr7	4238869	4239869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081239, intron 4 of 5)	intron (NM_001081239, intron 4 of 5)	1615.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	205.37	221.18	117.47	253.69	182.87	185.68	278.83	287.41	139.89
Merged-chr5-137631320-3	chr5	137630846	137631846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	2223.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	148.73	133.63	150.77	130.22	82.57	129.41	128.85	147.24	111.17
Merged-chr5-129887427-3	chr5	129886921	129887921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024166)	promoter-TSS (NM_024166)	49.0	NM_024166	14004.0	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	61.21	69.12	89.72	74.22	83.51	93.24	88.72	53.94	52.46
Merged-chrX-75056347-1	chrX	75055847	75056847	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	intron (NM_181584, intron 1 of 9)	28558.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	3.43	5.99	1.85	5.4	7.93	6.43	9.51	8.4	5.62
Merged-chr18-36522254-3	chr18	36521744	36522744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5908.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	31.46	23.96	40.7	30.36	21.46	23.31	33.8	26.53	17.49
Merged-chr4-11191308-3	chr4	11190822	11191822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-29.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	10.87	4.61	13.87	20.24	5.6	0.0	23.24	22.99	14.99
Merged-chr8-119824258-3	chr8	119823754	119824754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	16325.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	64.07	39.63	24.97	51.95	42.92	34.56	48.58	42.89	20.61
Merged-chr10-115315562-3	chr10	115315088	115316088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	3.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	347.24	343.74	362.58	323.86	327.96	285.34	329.53	311.73	234.2
Merged-chr7-122138453-3	chr7	122137962	122138962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021608, intron 4 of 5)	intron (NM_021608, intron 4 of 5)	5421.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	46.91	46.08	56.42	64.77	18.19	75.56	64.43	61.02	41.84
Merged-chr17-29008138-3	chr17	29007632	29008632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134115)	promoter-TSS (NM_134115)	-137.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	337.51	326.7	193.32	299.57	229.06	250.78	331.64	323.67	190.48
Merged-chr7-88054410-3	chr7	88053903	88054903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-223682.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	31.46	29.49	29.6	29.01	23.79	34.56	33.8	27.41	13.12
Merged-chr13-69611640-3	chr13	69611126	69612126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-163.0	NM_175283	78925.0	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	100.11	96.76	51.8	101.88	83.51	70.73	99.28	99.49	40.59
Merged-chr16-21423160-3	chr16	21422656	21423656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285894)	promoter-TSS (NM_001285894)	38.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	111.55	76.49	62.9	116.05	111.96	94.85	108.79	100.37	46.22
Merged-chr15-79414779-3	chr15	79414289	79415289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11486.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	194.5	154.82	86.02	199.72	138.09	113.33	133.08	168.91	85.56
Merged-chr5-43788561-3	chr5	43788078	43789078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6429.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	28.6	24.42	13.87	41.83	32.19	28.94	22.18	10.61	24.36
Merged-chr2-44957390-3	chr2	44956907	44957907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65770.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	93.82	111.97	73.07	74.22	64.84	72.34	94.0	122.04	60.58
Merged-chr3-31093793-3	chr3	31093300	31094300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1258.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	235.69	233.16	210.89	192.97	177.74	185.68	284.11	315.71	131.15
Merged-chr15-38374054-3	chr15	38373570	38374570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73359.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	57.21	40.09	33.3	68.15	47.12	57.07	49.64	53.94	23.73
Merged-chr11-8589697-3	chr11	8589194	8590194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	74841.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	160.75	108.75	90.65	129.55	80.71	118.16	129.91	94.18	96.18
Merged-chr2-35337080-3	chr2	35336578	35337578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-69.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	175.62	186.62	173.89	192.29	139.49	162.37	192.23	230.37	128.65
Merged-chr10-67537614-3	chr10	67537099	67538099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010118)	promoter-TSS (NM_010118)	-270.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	243.12	240.07	155.39	215.91	216.93	188.09	249.26	272.37	99.92
Merged-chr2-32260107-3	chr2	32259608	32260608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-3.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	185.35	182.47	125.79	191.62	126.42	107.71	194.34	225.51	76.19
Merged-chr4-137345966-3	chr4	137345466	137346466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	11793.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	20.59	24.88	16.65	18.22	11.2	18.49	27.46	18.13	15.61
Merged-chr15-75921563-3	chr15	75921031	75922031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025412)	promoter-TSS (NM_025412)	29.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	140.73	188.46	186.84	123.47	133.42	160.76	156.32	160.95	139.27
Merged-chr16-76373122-3	chr16	76372634	76373634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173440)	promoter-TSS (NM_173440)	-85.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	340.94	223.94	268.24	337.36	210.86	282.93	325.31	232.14	192.35
Merged-chr7-127895660-3	chr7	127895164	127896164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178600)	promoter-TSS (NM_178600)	-47.0	NM_178600	27973.0	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	40.62	23.5	25.9	42.51	39.65	36.97	24.29	32.72	23.73
Merged-chr12-57230413-3	chr12	57229903	57230903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037746)	promoter-TSS (NM_001037746)	-9.0	NM_001037746	328099.0	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	187.06	221.64	145.22	196.34	230.46	129.41	214.41	208.7	121.16
Merged-chr11-117829074-3	chr11	117828555	117829555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-3041.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	451.92	378.3	225.69	396.73	332.15	272.48	358.05	466.04	199.22
Merged-chr13-119835751-3	chr13	119835259	119836259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5542.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	12.01	11.52	8.32	7.42	4.2	11.25	10.56	4.42	2.5
Merged-chr6-108477173-3	chr6	108476677	108477677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-12566.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	151.59	133.63	109.14	147.76	159.55	135.84	34.85	36.7	26.23
Merged-chr4-45530889-3	chr4	45530382	45531382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033306)	promoter-TSS (NM_001033306)	-54.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	248.84	167.73	161.87	213.21	146.95	147.09	221.8	133.53	101.17
Merged-chr16-87635549-3	chr16	87635044	87636044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63410.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	95.53	123.49	54.57	112.68	104.96	98.06	77.1	73.4	34.97
Merged-chr6-88068958-3	chr6	88068451	88069451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-15522.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	18.88	29.49	42.55	22.94	18.19	21.7	19.01	26.09	24.98
Merged-chr3-135438835-1	chr3	135438335	135439335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_030689)	promoter-TSS (NR_030689)	134.0	NM_025356	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	605.8	447.88	422.7	535.73	308.83	300.62	482.68	295.81	228.58
Merged-chr19-21737688-3	chr19	21737190	21738190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40650.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	102.4	106.44	58.27	120.77	120.36	99.67	135.19	157.85	75.57
Merged-chr10-37321384-3	chr10	37320889	37321889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182463.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	104.11	55.29	48.1	87.71	32.19	25.72	76.05	39.35	54.33
Merged-chr17-71693438-3	chr17	71692933	71693933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177087, intron 6 of 19)	intron (NM_177087, intron 6 of 19)	20172.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.86	2.76	3.7	6.07	2.8	3.22	3.17	1.77	3.75
Merged-chr19-41264072-3	chr19	41263544	41264544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-40.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	606.95	417.47	482.83	477.7	297.17	351.26	458.38	293.6	293.53
Merged-chr6-86733409-3	chr6	86732919	86733919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011818)	promoter-TSS (NM_011818)	-41.0	NM_011818	23885.0	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	72.65	49.76	46.25	87.71	81.64	79.58	76.05	77.38	37.47
Merged-chr13-113382989-2	chr13	113382485	113383485	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	119859.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.01	6.45	7.4	15.52	8.86	13.66	13.73	10.17	3.75
Merged-chr10-17201296-3	chr10	17200777	17201777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105495.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	53.2	37.32	57.35	39.13	24.72	31.35	51.75	44.66	36.85
Merged-chr17-83732329-3	chr17	83731819	83732819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	26156.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	181.34	191.69	135.04	157.21	148.82	138.25	159.48	195.88	118.66
Merged-chr6-89595593-3	chr6	89595102	89596102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025351)	promoter-TSS (NM_025351)	50.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	69.79	47.46	39.77	71.52	50.38	24.11	65.48	47.31	12.49
Merged-chr3-15575123-1	chr3	15574623	15575623	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-58.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	17.16	35.02	21.27	21.59	59.71	30.54	78.16	58.37	50.59
Merged-chr13-49216133-3	chr13	49215640	49216640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026738)	promoter-TSS (NM_026738)	-114.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	421.6	346.05	294.14	447.34	322.82	248.37	320.02	311.29	196.1
Merged-chr8-69902433-1	chr8	69901933	69902933	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_032004, exon 1 of 1)	exon (NM_032004, exon 1 of 1)	125.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	312.91	397.2	296.91	281.36	323.29	321.52	361.22	398.39	234.2
Merged-chr9-109017316-3	chr9	109016819	109017819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-21248.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	30.89	26.73	5.55	45.21	30.79	43.4	24.29	27.86	14.99
Merged-chr1-74392217-3	chr1	74391727	74392727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	CpG	618.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	316.92	291.22	275.64	291.48	219.73	280.52	322.14	244.96	224.83
Merged-chr7-17023973-3	chr7	17023463	17024463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	3951.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	166.47	141.92	139.67	174.08	133.42	162.37	241.87	209.59	91.81
Merged-chr6-92091431-3	chr6	92090920	92091920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011630)	promoter-TSS (NM_011630)	2.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	166.47	144.23	209.04	174.75	123.62	182.46	217.57	111.87	118.66
Merged-chr10-81401906-3	chr10	81401395	81402395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	-7680.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	174.48	129.48	87.87	255.72	219.26	151.11	177.44	212.68	108.67
Merged-chr11-20631442-3	chr11	20630934	20631934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038625)	promoter-TSS (NM_001038625)	-543.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	58.35	82.48	76.77	70.17	62.05	77.16	87.66	88.43	49.34
Merged-chr19-29806593-3	chr19	29806098	29807098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	-589.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	164.18	149.75	120.24	129.55	120.36	122.18	177.44	113.64	71.2
Merged-chr7-65650825-3	chr7	65650329	65651329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172310, intron 3 of 18)	URR1B|DNA|hAT-Charlie	5931.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	20.59	24.42	22.2	20.92	17.26	21.7	59.15	38.47	23.73
Merged-chr3-22076726-3	chr3	22076215	22077215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030732)	promoter-TSS (NM_030732)	63.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	177.91	139.16	221.99	207.81	120.83	166.38	236.59	115.85	113.04
Merged-chr11-73133215-3	chr11	73132709	73133709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 24 of 30)	intron (NM_001361245, intron 24 of 30)	5085.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	200.79	207.35	121.17	188.25	155.81	106.9	197.51	207.38	129.9
Merged-chr1-134079201-3	chr1	134078707	134079707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-52.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	355.82	196.75	161.87	296.2	202.0	208.18	275.66	215.34	126.78
Merged-chr2-166327167-3	chr2	166326678	166327678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	53270.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.15	5.99	0.0	5.4	0.0	4.82	4.22	0.44	0.0
Merged-chr11-116274185-3	chr11	116273655	116274655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	62.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	107.55	56.22	39.77	135.62	89.1	105.3	132.02	92.86	51.84
Merged-chr14-70798774-3	chr14	70798275	70799275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	24394.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	34.32	24.42	17.57	37.78	30.32	52.25	40.14	44.22	27.48
Merged-chr9-66611838-3	chr9	66611318	66612318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18703.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	28.03	26.26	16.65	43.86	20.53	32.15	22.18	21.67	15.61
Merged-chr4-45452704-3	chr4	45452192	45453192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-43926.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	44.62	39.63	49.02	64.1	41.99	53.85	95.06	91.09	41.84
Merged-chr6-117841188-3	chr6	117840693	117841693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346652)	promoter-TSS (NM_001346652)	12.0	NM_001346651	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	36.04	27.65	29.6	43.18	53.18	42.6	24.29	21.67	19.36
Merged-chr11-101442295-3	chr11	101441818	101442818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	73.0	NM_011289	19942.0	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	177.91	142.38	87.87	214.56	168.88	116.55	168.99	159.62	71.82
Merged-chr11-69580340-3	chr11	69579853	69580853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011640)	promoter-TSS (NM_011640)	-6.0	NM_011640	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	233.97	233.16	160.02	201.07	148.35	194.52	247.15	283.43	198.6
Merged-chr18-44380388-3	chr18	44379877	44380877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027490)	promoter-TSS (NM_027490)	-123.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	164.75	140.08	160.94	126.85	116.63	163.97	113.01	118.5	99.92
Merged-chr11-94327966-3	chr11	94327482	94328482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-19.0	NM_027799	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	239.12	217.95	157.24	233.45	204.33	195.32	223.91	185.71	116.79
Merged-chr2-117018663-3	chr2	117018165	117019165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102406.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	160.18	141.0	98.97	168.0	131.09	129.41	154.2	192.34	81.81
Merged-chr4-132971748-3	chr4	132971248	132972248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2347.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	40.62	41.47	38.85	37.78	22.39	16.88	32.74	38.47	25.61
Merged-chr13-98832622-3	chr13	98832113	98833113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17164.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	127.57	110.59	82.32	114.03	80.71	98.06	83.44	107.45	73.07
Merged-chr17-28233581-3	chr17	28233085	28234085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	831.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	169.9	143.76	145.22	178.13	147.42	122.18	174.27	189.69	96.18
Merged-chr12-111538759-3	chr12	111538260	111539260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178041, intron 2 of 11)	CpG-3539	659.0	NM_173363	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	522.29	382.45	321.88	555.97	369.01	237.12	367.55	297.14	187.36
Merged-chr4-35099985-3	chr4	35099435	35100435	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-52120.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	38.9	40.55	27.75	51.95	32.19	33.76	34.85	19.46	30.6
Merged-chr13-9276589-3	chr13	9276090	9277090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081426)	promoter-TSS (NM_001081426)	65.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	191.64	155.28	160.02	207.14	166.08	134.23	194.34	142.38	76.19
Merged-chr13-105377229-3	chr13	105376710	105377710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66483.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	9.72	8.29	4.62	3.37	1.87	4.82	10.56	4.86	0.0
Merged-chr2-126152076-3	chr2	126151582	126152582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026981)	promoter-TSS (NM_026981)	-59.0	NM_001355583	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	66.93	88.01	46.25	82.32	85.84	77.97	71.82	73.84	59.95
Merged-chr8-117157901-3	chr8	117157400	117158400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081151)	promoter-TSS (NM_001081151)	-235.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	172.19	133.17	142.44	143.04	111.03	125.39	132.02	114.52	75.57
Merged-chr4-117124542-1	chr4	117124042	117125042	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_024078, exon 2 of 7)	non-coding (NR_024078, exon 2 of 7)	1183.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	96.11	79.25	75.85	150.46	132.49	155.13	141.53	142.82	63.08
Merged-chr14-103478167-3	chr14	103477657	103478657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35184.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	68.65	82.48	61.97	70.17	69.51	75.56	97.17	109.22	83.69
Merged-chr1-174029599-1	chr1	174029099	174030099	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172648, intron 1 of 6)	intron (NM_172648, intron 1 of 6)	2156.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	6.29	6.45	1.85	31.71	19.59	28.94	26.4	46.87	29.98
Merged-chr7-79273069-3	chr7	79272567	79273567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018811)	promoter-TSS (NM_018811)	-199.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	16.02	11.52	18.5	18.89	10.73	1.61	14.79	8.4	3.75
Merged-chr2-30474275-3	chr2	30473754	30474754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030244)	promoter-TSS (NM_030244)	-55.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	8.01	7.37	7.4	20.24	7.46	11.25	12.67	13.71	13.12
Merged-chr11-93887207-3	chr11	93886715	93887715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346525, intron 2 of 17)	intron (NM_001346525, intron 2 of 17)	996.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	133.86	103.22	82.32	112.68	54.58	49.83	149.98	165.37	46.84
Merged-chr4-45448494-1	chr4	45447994	45448994	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	URR1B|DNA|hAT-Charlie	-39728.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	8.01	1.84	3.7	3.37	1.87	0.0	32.74	17.69	23.11
Merged-chr8-115423241-3	chr8	115422741	115423741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	283653.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	81.8	116.12	58.27	97.83	101.23	63.5	87.66	84.45	39.97
Merged-chr7-38189650-3	chr7	38189151	38190151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085385, intron 2 of 3)	intron (NM_001085385, intron 2 of 3)	5864.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	90.96	91.7	134.12	49.93	36.85	73.14	57.03	32.72	59.33
Merged-chr10-39440373-3	chr10	39439872	39440872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	70573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	17.16	14.75	14.8	21.59	7.93	14.47	14.79	19.9	19.36
Merged-chr7-100964366-3	chr7	100963877	100964877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-11.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	110.41	110.59	107.29	131.57	105.9	107.71	79.21	90.64	65.58
Merged-chr1-89563633-3	chr1	89563134	89564134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108823.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	14.3	10.6	11.1	19.57	7.93	20.09	12.67	4.86	6.25
Merged-chr14-21090542-3	chr14	21090037	21091037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243041, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	14385.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	8.58	13.36	13.87	23.62	10.73	20.9	11.62	12.82	13.74
Merged-chr12-85394224-3	chr12	85393734	85394734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19517.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	150.45	160.35	98.97	160.58	155.81	169.6	162.65	196.76	97.43
Merged-chr13-5874929-3	chr13	5874424	5875424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13435.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	29.75	26.73	26.82	26.31	30.32	16.88	24.29	21.22	8.12
Merged-chr4-137357721-3	chr4	137357216	137358216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	43.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	333.51	233.62	235.86	346.13	222.99	257.21	258.77	169.79	161.13
Merged-chr13-23575751-3	chr13	23575240	23576240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	-23.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	144.16	122.57	92.5	112.68	69.51	98.87	99.28	146.36	81.81
Merged-chr6-146222182-3	chr6	146221694	146222694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280029.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	43.48	20.27	18.5	65.45	54.11	38.58	50.7	25.65	16.86
Merged-chr12-52383168-3	chr12	52382667	52383667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97442.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	9.72	9.68	7.4	11.47	8.86	3.22	24.29	14.59	6.25
Merged-chr10-84622319-3	chr10	84621818	84622818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027423)	promoter-TSS (NM_027423)	-119.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	77.23	83.4	60.12	87.04	79.77	76.36	85.55	111.43	36.85
Merged-chr1-85735913-3	chr1	85735410	85736410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177055, intron 1 of 5)	intron (NM_177055, intron 1 of 5)	696.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	224.82	263.11	190.54	166.66	203.86	221.85	235.53	264.42	131.78
Merged-chr12-112648247-1	chr12	112647747	112648747	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013929, intron 3 of 3)	intron (NM_013929, intron 3 of 3)	3419.0	NM_013929	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	2.29	2.76	1.85	11.47	2.8	0.8	8.45	4.42	8.12
Merged-chr2-117386716-3	chr2	117386217	117387217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43840.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	42.9	41.01	58.27	53.3	28.92	65.91	30.63	24.76	29.98
Merged-chr9-106685851-3	chr9	106685320	106686320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011573)	promoter-TSS (NM_011573)	-4.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	73.22	70.04	65.67	79.62	77.91	67.52	99.28	65.0	33.72
Merged-chr7-110920961-3	chr7	110920451	110921451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	intron (NM_194464, intron 10 of 20)	15966.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	43.48	52.07	37.0	62.75	46.65	50.64	58.09	48.2	31.85
Merged-chr18-46535359-3	chr18	46534845	46535845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9374.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	50.91	64.97	37.0	69.5	51.32	67.52	59.15	62.35	41.22
Merged-chr10-61452920-3	chr10	61452419	61453419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010124)	promoter-TSS (NM_010124)	-250.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	122.42	89.85	96.2	108.63	63.45	86.01	118.29	73.4	55.58
Merged-chr5-65698298-3	chr5	65697796	65698796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-440.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	166.47	110.59	177.59	145.06	115.69	122.98	163.71	114.52	98.05
Merged-chr10-13964779-3	chr10	13964285	13965285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1290.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	415.31	355.73	281.19	388.64	319.09	242.74	349.6	421.39	162.38
Merged-chr4-118135594-3	chr4	118135088	118136088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161774)	promoter-TSS (NM_001161774)	-642.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	147.59	135.47	118.39	120.77	132.49	137.45	153.15	189.25	73.07
Merged-chr1-152807768-3	chr1	152807234	152808234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010877, exon 2 of 16)	5' UTR (NM_010877, exon 2 of 16)	7581.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	181.91	168.19	142.44	190.27	189.4	155.93	174.27	211.8	131.15
Merged-chr1-9748497-3	chr1	9747992	9748992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173443)	promoter-TSS (NM_173443)	-110.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	177.34	152.52	127.64	141.69	126.42	115.75	139.42	131.77	114.29
Merged-chr11-54438521-2	chr11	54438056	54439056	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	CpG	377.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	529.15	552.02	332.98	581.61	571.47	362.51	499.58	557.57	279.79
Merged-chr6-29985246-3	chr6	29984751	29985751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-78.0	NR_040264	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	90.38	75.11	35.15	74.89	48.98	45.82	54.92	36.7	23.73
Merged-chr8-27018583-3	chr8	27018065	27019065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-5234.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	98.97	75.57	51.8	126.17	124.56	84.4	97.17	99.93	54.96
Merged-chr8-41218093-1	chr8	41217593	41218593	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B3A_MM|LTR|ERVK	-2937.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	1.14	0.46	3.7	4.72	0.0	0.0	13.73	17.24	7.49
Merged-chr10-39415784-3	chr10	39415274	39416274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MIR3|SINE|MIR	45975.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	28.03	38.71	37.92	41.83	40.12	38.58	43.3	28.3	14.99
Merged-chr1-75142644-3	chr1	75142132	75143132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305232)	promoter-TSS (NM_001305232)	79.0	NM_026977	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	223.1	202.75	197.02	211.86	249.12	198.54	251.37	267.07	134.9
Merged-chr2-122156117-3	chr2	122155617	122156617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-4583.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	29.17	25.34	41.62	22.27	15.86	40.99	20.07	16.36	44.34
Merged-chr11-53430972-4	chr11	53430506	53431506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326614)	promoter-TSS (NM_001326614)	-175.0	NM_001326614	22272.0	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	364.97	320.71	175.74	303.62	312.56	233.9	292.56	317.03	146.14
Merged-chr9-30427045-3	chr9	30426532	30427532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028874)	promoter-TSS (NM_028874)	-297.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	40.62	45.62	17.57	51.95	42.45	33.76	42.25	22.11	18.11
Merged-chr4-117134030-3	chr4	117133537	117134537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013807)	promoter-TSS (NM_013807)	-74.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	183.06	133.63	95.27	171.38	123.16	124.59	165.82	121.6	68.07
Merged-chr12-24572171-3	chr12	24571655	24572655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161406)	promoter-TSS (NM_001161406)	-132.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	33.18	33.18	25.9	34.41	27.99	11.25	23.24	18.57	19.36
Merged-chr7-126584757-3	chr7	126584217	126585217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138310)	promoter-TSS (NM_138310)	-291.0	NM_138310	171504.0	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	211.66	188.0	139.67	163.28	149.75	146.29	162.65	170.23	106.79
Merged-chr2-155074389-4	chr2	155073876	155074876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016661, exon 1 of 10)	exon (NM_016661, exon 1 of 10)	121.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	31.46	33.64	31.45	68.15	56.45	44.21	53.87	69.86	30.6
Merged-chr8-110970357-3	chr8	110969838	110970838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	27485.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	71.51	77.41	35.15	69.5	68.58	93.24	102.45	100.37	41.84
Merged-chr2-39011468-3	chr2	39010959	39011959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028809, intron 1 of 3)	intron (NM_028809, intron 1 of 3)	3320.0	NM_028809	74192.0	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	28.6	27.19	17.57	26.31	24.72	37.78	31.69	34.05	15.61
Merged-chr2-31082889-3	chr2	31082393	31083393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	13607.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	96.11	64.97	32.37	81.64	51.78	43.4	47.53	40.24	26.85
Merged-chr7-6282969-3	chr7	6282463	6283463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3617.0	NM_001024928	384763.0	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	135.58	186.16	93.42	134.27	115.69	94.04	181.66	180.85	99.92
Merged-chr11-78246197-3	chr11	78245683	78246683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	432.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	337.51	280.62	209.96	230.08	203.86	178.44	256.65	220.2	142.39
Merged-chr5-120503621-3	chr5	120503135	120504135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023625)	promoter-TSS (NM_023625)	-12.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	120.13	98.15	81.4	114.03	139.95	98.06	182.72	129.55	64.33
Merged-chr13-19690200-3	chr13	19689708	19690708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181591, exon 7 of 17)	exon (NM_181591, exon 7 of 17)	7552.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	78.37	94.46	57.35	44.53	44.78	31.35	57.03	63.67	33.1
Merged-chr5-99363267-3	chr5	99362779	99363779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-110352.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	188.78	180.63	134.12	227.38	174.94	158.35	240.81	250.71	123.03
Merged-chr13-113870548-3	chr13	113870036	113871036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	76028.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	45.19	59.9	39.77	68.82	91.44	70.73	82.38	61.9	36.85
Merged-chr11-62079708-3	chr11	62079217	62080217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029936, intron 1 of 12)	ERV3-16A3_LTR|LTR|ERVL	2693.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.43	5.07	3.7	8.77	6.06	6.43	6.34	2.65	3.12
Merged-chr2-104494601-3	chr2	104494096	104495096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145824)	promoter-TSS (NM_001145824)	-107.0	NM_001145824	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	240.83	234.08	205.34	182.85	181.47	211.4	250.32	169.35	162.38
Merged-chr2-90489105-3	chr2	90488616	90489616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-9942.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	127.57	123.03	79.55	116.73	81.17	110.12	139.42	186.15	106.17
Merged-chr6-127446747-3	chr6	127446255	127447255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346513)	promoter-TSS (NM_001346513)	-85.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	124.71	123.95	60.12	78.27	61.58	62.7	109.84	114.96	41.22
Merged-chr11-103007141-3	chr11	103006647	103007647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	MIRb|SINE|MIR	-7226.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	148.16	127.18	92.5	159.23	101.7	93.24	183.78	121.6	103.05
Merged-chr17-80112846-4	chr17	80112413	80113413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14558.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	41.76	34.1	17.57	75.57	53.18	49.83	27.46	21.67	16.24
Merged-chr9-105484518-3	chr9	105484027	105485027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	L1MB7|LINE|L1	10606.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	88.67	100.45	76.77	54.65	61.58	53.85	68.65	84.45	59.33
Merged-chr10-22334190-2	chr10	22333693	22334693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	L1_Mus1|LINE|L1	27473.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	6.86	7.37	11.1	4.72	2.8	1.61	2.11	2.65	3.12
Merged-chr13-55182767-3	chr13	55182246	55183246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27036.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	74.94	78.33	27.75	122.8	107.3	55.46	163.71	180.4	83.06
Merged-chr17-28224198-3	chr17	28223696	28224696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027185, intron 7 of 10)	intron (NM_027185, intron 7 of 10)	-8558.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	6.29	5.53	12.02	10.8	9.8	12.86	7.39	9.29	4.37
Merged-chr16-55895349-3	chr16	55894862	55895862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134457)	promoter-TSS (NM_001134457)	-83.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	14.87	16.59	16.65	27.66	17.73	19.29	25.35	14.59	10.62
Merged-chr14-70545269-3	chr14	70544791	70545791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180588)	promoter-TSS (NM_180588)	40.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	50.34	60.82	30.52	70.85	86.77	51.44	47.53	42.89	23.73
Merged-chr11-86993840-3	chr11	86993345	86994345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005341)	promoter-TSS (NM_001005341)	-83.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	57.21	73.26	64.75	72.87	70.91	86.81	90.83	76.05	61.2
Merged-chr14-30641907-3	chr14	30641402	30642402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12473.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	15.45	7.83	9.25	14.17	3.27	11.25	12.67	6.63	5.0
Merged-chr2-77946063-3	chr2	77945572	77946572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030560, intron 1 of 20)	CpG	284.0	NM_001290740	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	250.56	310.11	157.24	234.8	260.78	153.52	299.96	296.69	130.53
Merged-chr8-66405939-3	chr8	66405446	66406446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	19645.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	57.78	55.75	42.55	45.21	35.92	39.39	51.75	44.66	34.97
Merged-chr9-85748923-3	chr9	85748443	85749443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 1 of 27)	CpG	391.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	291.18	254.81	211.81	282.03	235.59	211.4	305.24	264.86	201.1
Merged-chr7-67373291-3	chr7	67372762	67373762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-404.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	358.11	378.76	308.93	367.05	362.94	282.13	341.15	386.9	278.54
Merged-chr17-78835456-3	chr17	78834956	78835956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	-60.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	32.04	34.1	59.2	41.16	38.25	50.64	47.53	48.2	31.23
Merged-chr1-131974275-3	chr1	131973762	131974762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	3653.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	170.47	176.94	156.32	152.49	129.22	129.41	159.48	176.42	96.8
Merged-chr3-34081300-3	chr3	34080806	34081806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286972)	promoter-TSS (NM_001286972)	48.0	NM_001026211	67713.0	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	36.61	38.25	40.7	39.13	50.38	45.01	42.25	56.16	34.97
Merged-chr1-132011046-4	chr1	132010492	132011492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	3387.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	90.96	97.69	73.07	93.79	73.24	40.99	86.61	82.24	63.7
Merged-chr16-55839346-3	chr16	55838846	55839846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030612)	promoter-TSS (NM_030612)	-705.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	240.83	245.14	154.47	193.64	216.46	133.43	210.18	237.44	104.92
Merged-chr12-55321880-2	chr12	55321372	55322372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025373, intron 3 of 6)	intron (NM_025373, intron 3 of 6)	-18872.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	8.58	8.29	5.55	10.8	4.67	1.61	5.28	0.44	6.25
Merged-chr2-154677211-3	chr2	154676722	154677722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20196.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	166.47	210.58	140.59	116.73	130.16	98.87	118.29	131.32	89.93
Merged-chr13-106947076-3	chr13	106946564	106947564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025447)	promoter-TSS (NM_025447)	-65.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	140.15	135.01	121.17	118.08	111.03	99.67	137.3	127.34	98.68
Merged-chr10-87753723-3	chr10	87753222	87754222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104543.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	20.59	22.58	9.25	16.19	26.59	14.47	51.75	31.39	23.11
Merged-chr9-121719980-2	chr9	121719496	121720496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010918, intron 2 of 16)	CpG-15515	815.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	309.48	208.74	185.92	297.55	236.99	177.64	256.65	191.02	106.17
Merged-chr1-120532714-3	chr1	120532197	120533197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27673.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	110.41	101.37	97.12	67.47	47.12	45.82	153.15	105.68	79.32
Merged-chr4-41311334-3	chr4	41310823	41311823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	3578.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	99.54	90.77	99.89	100.53	69.98	106.1	57.03	95.07	86.18
Merged-chr2-157367007-3	chr2	157366518	157367518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	-576.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	478.81	418.85	215.51	219.28	219.26	188.09	226.02	253.8	139.89
Merged-chr5-121545971-3	chr5	121545473	121546473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-81.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	278.59	177.86	181.29	234.13	204.8	210.59	232.36	233.46	128.65
Merged-chr5-136908143-3	chr5	136907667	136908667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026073)	promoter-TSS (NM_026073)	17.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	66.36	78.33	49.02	72.87	69.51	36.97	69.71	89.32	53.08
Merged-chr2-167833728-3	chr2	167833196	167834196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98631.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	41.76	24.88	26.82	57.35	27.99	47.42	67.6	24.76	22.48
Merged-chr9-66620933-3	chr9	66620425	66621425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27810.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	14.3	12.44	14.8	14.84	11.2	8.04	12.67	10.61	13.74
Merged-chr15-101191695-3	chr15	101191182	101192182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-2187.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	189.35	158.97	119.32	179.47	167.01	139.86	164.76	164.04	86.18
Merged-chr2-32536994-3	chr2	32536495	32537495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	1636.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	70.93	75.11	57.35	65.45	66.24	81.99	67.6	93.74	57.46
Merged-chr13-55021365-3	chr13	55020885	55021885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206390)	promoter-TSS (NM_001206390)	0.0	NM_001206392	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	255.14	237.76	170.19	198.37	191.73	163.17	261.93	297.14	129.9
Merged-chr8-3481838-3	chr8	3481325	3482325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029598, intron 4 of 8)	RLTR12A|LTR|ERVK	10963.0	NM_029598	76406.0	Mm.74996	NM_029598	ENSMUSG00000040340	Tex45	1700019B03Rik	testis expressed 45	protein-coding	10.87	13.82	9.25	7.42	9.33	14.47	12.67	5.75	5.0
Merged-chr2-3332622-3	chr2	3332133	3333133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013376)	promoter-TSS (NM_001013376)	-5.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	279.73	329.46	220.14	318.47	323.76	200.95	264.05	294.48	120.53
Merged-chr8-90795520-3	chr8	90795007	90796007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33328.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	20.59	20.27	23.12	25.64	31.72	45.01	34.85	27.86	23.73
Merged-chr5-36792093-3	chr5	36791590	36792590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4664.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	35.47	17.05	15.72	22.94	20.53	31.35	22.18	7.96	22.48
Merged-chr12-4488564-3	chr12	4488042	4489042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11360.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	17.16	17.97	11.1	36.43	17.26	33.76	21.12	9.73	16.24
Merged-chr8-125528144-3	chr8	125527657	125528657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	-35324.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	50.34	46.08	40.7	49.25	46.18	36.17	29.57	40.24	28.1
Merged-chr11-34054538-3	chr11	34054057	34055057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	7629.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	131.57	117.96	97.12	118.08	89.57	122.98	104.56	126.02	68.7
Merged-chr12-83922041-3	chr12	83921539	83922539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073563)	promoter-TSS (NR_073563)	-105.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	69.22	57.14	66.6	61.4	43.39	61.89	79.21	64.11	34.35
Merged-chr6-40436120-3	chr6	40435618	40436618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356375)	promoter-TSS (NM_001356375)	17.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	2.86	2.76	7.4	1.35	3.73	3.22	3.17	3.1	5.62
Merged-chr4-58540581-1	chr4	58540081	58541081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	12712.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	2.29	0.92	1.85	2.7	4.2	0.8	7.39	3.1	2.5
Merged-chr1-87756372-2	chr1	87755872	87756872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029846, intron 1 of 17)	CpG	361.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	360.97	361.72	239.56	255.72	351.28	272.48	243.98	275.91	196.73
Merged-chr13-81136816-3	chr13	81136338	81137338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	258.0	246.06	138.74	317.12	271.51	175.23	243.98	305.54	155.51
Merged-chr6-87802671-3	chr6	87802166	87803166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	7091.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	64.07	32.25	38.85	53.3	25.66	14.47	33.8	34.93	29.35
Merged-chr17-55959304-5	chr17	55958838	55959838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_108021)	promoter-TSS (NR_108021)	63.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	289.46	252.51	193.32	267.86	215.99	180.85	243.98	249.38	114.91
Merged-chr17-21008913-3	chr17	21008406	21009406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145483)	promoter-TSS (NM_145483)	-35.0	NM_145483	224585.0	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	113.27	129.48	86.02	89.06	87.7	102.88	116.18	95.95	74.94
Merged-chr12-33147682-3	chr12	33147176	33148176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015602)	promoter-TSS (NR_015602)	-10.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	219.1	222.1	115.62	189.6	220.66	125.39	180.61	165.37	92.43
Merged-chr7-88271695-3	chr7	88271203	88272203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6382.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	113.27	129.02	77.7	132.92	100.77	100.47	105.62	110.98	74.94
Merged-chr13-5778364-3	chr13	5777902	5778902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	79690.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	228.82	223.48	119.32	228.73	204.8	132.63	174.27	175.54	114.91
Merged-chr3-65586466-3	chr3	65585953	65586953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57039.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	8.01	11.52	3.7	18.22	10.26	12.06	23.24	13.27	5.62
Merged-chr8-70374706-3	chr8	70374161	70375161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016685, intron 3 of 18)	CpG	1113.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	18.88	10.6	24.97	32.39	18.66	49.83	30.63	15.92	11.24
Merged-chr1-44118856-3	chr1	44118326	44119326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023645)	promoter-TSS (NM_023645)	-53.0	NM_023645	72050.0	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	68.65	70.04	67.52	73.54	69.04	127.8	82.38	102.58	53.08
Merged-chr10-78136160-3	chr10	78135675	78136675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33593.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	61.21	43.31	12.95	47.23	20.06	16.88	33.8	38.03	32.48
Merged-chr13-55100209-3	chr13	55099645	55100645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293660, intron 1 of 12)	CpG	155.0	NR_121592	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	159.6	115.66	102.67	133.59	126.89	114.94	151.03	92.86	66.82
Merged-chr2-122377438-3	chr2	122376904	122377904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-His-CAY_|tRNA|tRNA	-8486.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	169.33	220.25	114.69	135.62	157.68	122.98	125.69	167.58	73.69
Merged-chr14-47298221-3	chr14	47297726	47298726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360542)	promoter-TSS (NM_001360542)	-48.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	253.99	256.66	238.64	208.49	210.4	237.92	261.93	204.28	144.27
Merged-chr8-90873284-3	chr8	90872786	90873786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	44451.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	30.89	11.52	19.42	51.28	43.85	69.93	22.18	22.11	18.74
Merged-chr7-101361295-3	chr7	101360791	101361791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	13222.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	348.95	242.37	205.34	313.07	213.66	223.45	235.53	210.03	114.91
Merged-chr11-113684094-3	chr11	113683609	113684609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	42.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	212.8	199.06	168.34	187.57	188.47	155.93	194.34	177.31	101.17
Merged-chr10-80148031-3	chr10	80147524	80148524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021565)	promoter-TSS (NM_021565)	-248.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	277.45	187.08	192.39	253.69	157.21	196.93	197.51	214.89	121.78
Merged-chr4-138133571-2	chr4	138133080	138134080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355700, intron 8 of 30)	intron (NM_001355700, intron 8 of 30)	4938.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	42.33	40.09	46.25	31.04	33.12	26.53	2.11	4.86	1.25
Merged-chr5-43855995-3	chr5	43855481	43856481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12828.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	82.95	55.75	65.67	101.88	40.59	85.2	77.1	52.18	49.34
Merged-chr1-69687596-3	chr1	69687097	69688097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCGCG)n|Simple_repeat|Simple_repeat	-1637.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	42.9	42.39	34.22	67.47	51.32	53.05	63.37	26.97	41.84
Merged-chr7-12780661-3	chr7	12780092	12781092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4934.0	NM_001017955	232875.0	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	52.06	35.94	24.97	47.9	34.99	22.51	16.9	16.8	5.0
Merged-chr19-10510995-3	chr19	10510477	10511477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025333, intron 3 of 3)	MLT1E2|LTR|ERVL-MaLR	14232.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	63.5	75.57	53.65	68.15	60.65	57.07	88.72	126.02	58.08
Merged-chr4-117251923-3	chr4	117251437	117252437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285812)	promoter-TSS (NM_001285812)	-14.0	NM_001285814	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	40.62	37.32	31.45	28.34	11.2	12.86	21.12	15.03	18.74
Merged-chr11-111093159-3	chr11	111092673	111093673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27009.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	37.18	28.11	19.42	20.92	14.93	25.72	45.42	26.53	22.48
Merged-chr4-30961579-1	chr4	30961079	30962079	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	296983.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	5.15	1.38	7.4	6.75	7.46	4.82	2.11	0.44	5.62
Merged-chr17-32788252-4	chr17	32787665	32788665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346705)	promoter-TSS (NM_001346705)	122.0	NM_172458	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	143.59	181.55	139.67	133.59	173.07	147.9	178.5	153.43	106.17
Merged-chr14-79509104-3	chr14	79508608	79509608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6566.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	43.48	44.7	42.55	57.35	42.92	41.8	74.99	56.16	32.48
Merged-chr5-137786311-3	chr5	137785787	137786787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144913, exon 1 of 4)	5' UTR (NM_144913, exon 1 of 4)	414.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	342.66	198.6	245.11	309.7	204.33	254.0	292.56	247.61	177.99
Merged-chr2-59438599-3	chr2	59438101	59439101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46052.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	109.26	110.59	53.65	158.56	124.09	77.16	118.29	102.14	57.46
Merged-chr10-7232974-3	chr10	7232481	7233481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20744.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	17.73	14.28	22.2	22.27	9.33	19.29	14.79	16.8	19.98
Merged-chr8-41374776-3	chr8	41374281	41375281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-84.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	203.65	193.99	151.69	190.95	152.55	172.01	201.73	229.48	136.77
Merged-chr6-134897937-3	chr6	134897446	134898446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167696)	promoter-TSS (NM_001167696)	-15.0	NR_029441	72813.0	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	140.15	146.53	140.59	125.5	134.82	118.96	208.07	242.31	151.14
Merged-chr15-33083708-1	chr15	33083208	33084208	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	579.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	82.38	119.8	70.3	107.28	124.09	86.81	89.78	126.46	63.7
Merged-chr17-80553429-3	chr17	80552930	80553930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 3 of 9)	intron (NM_001360144, intron 3 of 9)	10404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	18.88	29.49	11.1	29.01	31.26	28.13	46.47	39.8	29.98
Merged-chr7-46919937-3	chr7	46919419	46920419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348089)	promoter-TSS (NM_001348089)	50.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	176.76	236.84	195.17	171.38	207.6	208.18	258.77	213.57	148.64
Merged-chr11-58330712-3	chr11	58330240	58331240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161338)	promoter-TSS (NM_001161338)	33.0	NM_001308167	79566.0	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	131.0	163.12	93.42	97.83	100.77	98.06	121.46	118.06	73.69
Merged-chr11-116616015-5	chr11	116615511	116616511	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8241.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	230.54	238.23	165.57	267.19	172.14	196.93	246.09	276.35	114.29
Merged-chr11-80067776-3	chr11	80067283	80068283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	13208.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	72.08	73.73	76.77	58.03	47.12	55.46	52.81	65.44	51.84
Merged-chr15-40954913-3	chr15	40954413	40955413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218788.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	54.92	63.13	41.62	102.56	80.24	65.91	74.99	76.05	49.96
Merged-chrX-102071355-3	chrX	102070861	102071861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278534)	promoter-TSS (NM_001278534)	-54.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	30.89	30.41	24.97	35.09	39.19	16.88	35.91	29.63	18.74
Merged-chr6-129234118-3	chr6	129233633	129234633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3912.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	143.59	149.29	113.77	126.85	83.04	99.67	143.64	150.34	113.66
Merged-chr17-74395548-3	chr17	74395037	74396037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-71.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	104.11	117.5	123.94	91.76	108.23	89.22	111.96	99.05	56.83
Merged-chr10-67115254-3	chr10	67114726	67115726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12032.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	201.93	144.23	137.82	180.82	104.03	70.73	124.63	124.25	58.71
Merged-chr3-59341802-3	chr3	59341297	59342297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	Lx8b|LINE|L1	2459.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	26.89	22.58	19.42	29.01	27.99	28.13	20.07	12.38	17.49
Merged-chr5-101968665-3	chr5	101968149	101969149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	101272.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	267.15	209.2	141.52	228.05	167.48	155.93	215.46	273.7	82.44
Merged-chr19-5924882-3	chr19	5924361	5925361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-45.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	140.73	122.57	98.97	106.61	90.5	135.04	113.01	138.84	123.66
Merged-chr7-97018168-3	chr7	97017671	97018671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 6 of 13)	intron (NM_153591, intron 6 of 13)	-63580.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	14.3	15.21	22.2	12.14	12.13	17.68	26.4	30.07	23.73
Merged-chr8-39642763-3	chr8	39642287	39643287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031195)	promoter-TSS (NM_031195)	-109.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	110.41	114.27	61.97	158.56	84.9	115.75	151.03	117.62	65.58
Merged-chr2-27418700-3	chr2	27418187	27419187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	8921.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	156.17	132.25	110.07	136.97	108.23	140.66	121.46	115.41	66.2
Merged-chr5-120517731-3	chr5	120517237	120518237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	6545.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	569.19	499.49	286.74	528.3	473.97	296.6	448.88	569.51	211.71
Merged-chr1-191075411-4	chr1	191074892	191075892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	HAL1|LINE|L1	12371.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	272.3	232.24	160.94	192.97	145.08	183.26	192.23	252.92	148.01
Merged-chr12-4208917-3	chr12	4208405	4209405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 16 of 21)	intron (NM_001159537, intron 16 of 21)	25060.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	46.91	31.33	40.7	61.4	36.39	57.07	34.85	22.55	9.99
Merged-chr2-45262127-3	chr2	45261624	45262624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144682.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	133.29	140.08	82.32	118.75	102.63	110.12	119.35	150.78	73.69
Merged-chr12-91534684-3	chr12	91534190	91535190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011648, intron 9 of 9)	intron (NM_011648, intron 9 of 9)	54959.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	20.59	14.75	12.95	24.29	13.06	13.66	19.01	8.4	21.23
Merged-chr8-56313803-3	chr8	56313324	56314324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	19272.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	58.92	85.25	39.77	46.56	50.85	36.97	60.2	60.58	63.7
Merged-chr14-30627547-3	chr14	30627043	30628043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	52.63	49.76	31.45	69.5	39.65	57.07	62.31	49.52	53.71
Merged-chr3-19214781-2	chr3	19214299	19215299	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 4 of 7)	intron (NM_001356295, intron 4 of 7)	26504.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	2.86	5.99	11.1	34.41	40.12	28.13	44.36	33.16	30.6
Merged-chr4-116464317-3	chr4	116463813	116464813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-132.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	23.45	17.51	12.95	34.41	14.93	36.97	33.8	14.59	20.61
Merged-chr11-116012682-3	chr11	116012151	116013151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016905)	promoter-TSS (NM_016905)	68.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	48.05	35.02	25.9	47.9	40.59	28.94	40.14	34.93	16.24
Merged-chr6-31217581-4	chr6	31217052	31218052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	922.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	447.92	429.91	327.43	458.13	419.39	290.97	391.84	485.06	236.7
Merged-chr15-26361910-2	chr15	26361414	26362414	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	52866.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	12.01	29.03	9.25	48.58	44.78	45.82	53.87	66.77	38.1
Merged-chr14-16243307-3	chr14	16242812	16243812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359883)	promoter-TSS (NM_001359883)	19.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	458.21	555.71	264.54	414.28	473.51	316.69	437.26	505.4	233.57
Merged-chr10-58382154-3	chr10	58381666	58382666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	10712.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	40.62	36.86	24.97	29.01	27.52	28.94	23.24	40.68	19.98
Merged-chr1-155145793-3	chr1	155145295	155146295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	1019.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	173.9	169.11	112.84	154.51	129.22	104.49	145.75	142.82	104.92
Merged-chr16-38458914-3	chr16	38458402	38459402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009855)	promoter-TSS (NM_009855)	-31.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	149.31	165.42	82.32	107.95	101.23	106.9	142.59	143.26	69.32
Merged-chr7-55962455-3	chr7	55961986	55962986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023647)	promoter-TSS (NM_023647)	7.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	313.49	330.38	284.89	277.98	327.96	295.79	298.9	332.07	224.21
Merged-chr1-138125468-1	chr1	138124968	138125968	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	49658.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	20.02	40.55	13.87	24.29	22.39	27.33	17.96	44.66	20.61
Merged-chr8-117802045-3	chr8	117801534	117802534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026758)	promoter-TSS (NM_026758)	-60.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	92.67	103.22	78.62	85.01	88.17	86.81	94.0	108.77	38.72
Merged-chr1-58712692-3	chr1	58712218	58713218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-568.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	305.48	305.5	149.84	264.49	233.25	182.46	231.3	340.91	127.4
Merged-chr1-144330500-3	chr1	144330012	144331012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81408.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	41.19	52.07	42.55	70.17	62.05	80.38	55.98	42.89	41.22
Merged-chr15-36794383-2	chr15	36793845	36794845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011740, exon 1 of 7)	5' UTR (NM_011740, exon 1 of 7)	193.0	NM_011740	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	348.38	364.02	288.59	360.97	329.82	311.87	269.33	286.97	211.71
Merged-chr7-66079624-3	chr7	66079132	66080132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024439)	promoter-TSS (NM_024439)	-17.0	NM_001348246	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	201.36	197.68	137.82	184.2	184.74	174.42	209.12	173.77	129.9
Merged-chr7-79811174-3	chr7	79810698	79811698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008589, exon 1 of 2)	exon (NM_008589, exon 1 of 2)	471.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	2.86	1.84	3.7	2.02	5.6	4.82	5.28	0.44	0.0
Merged-chr10-67536881-3	chr10	67536364	67537364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1005.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	188.78	146.99	122.09	170.7	117.09	117.35	203.84	167.58	74.32
Merged-chr15-103333418-3	chr15	103332914	103333914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	924.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	51.48	52.07	71.22	47.9	36.85	97.26	71.82	57.48	54.33
Merged-chr18-32376450-3	chr18	32376027	32377027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083334)	promoter-TSS (NM_001083334)	-690.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	70.93	96.3	84.17	64.1	62.05	72.34	108.79	131.77	88.06
Merged-chr10-44625780-3	chr10	44625289	44626289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167041.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	83.52	65.89	54.57	91.76	62.05	65.11	73.93	80.03	48.09
Merged-chr16-14350948-3	chr16	14350440	14351440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-10618.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	74.37	51.61	27.75	59.38	33.59	54.66	83.44	63.23	53.71
Merged-chr10-98776806-3	chr10	98776319	98777319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-137823.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	183.63	76.95	129.49	164.63	45.25	94.04	141.53	99.05	80.56
Merged-chr8-25052971-3	chr8	25052457	25053457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 9 of 11)	L1_Rod|LINE|L1	-13995.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	78.37	108.75	109.14	114.03	72.78	81.18	62.31	75.61	53.71
Merged-chr13-119631904-3	chr13	119631407	119632407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020279, intron 1 of 2)	CpG	8088.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	15.45	8.75	0.0	11.47	7.93	6.43	5.28	5.31	2.5
Merged-chr6-125041222-3	chr6	125040702	125041702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	1354.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	343.8	285.69	191.47	249.65	203.86	170.4	320.02	367.88	173.62
Merged-chr10-19915492-3	chr10	19914996	19915996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7822.0	NM_001161825	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	7.44	5.99	12.95	10.8	3.73	8.84	5.28	3.1	2.5
Merged-chr19-4943161-3	chr19	4942711	4943711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172835)	promoter-TSS (NM_172835)	-84.0	NM_001347422	240518.0	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	44.05	17.51	10.17	53.3	48.52	57.07	32.74	20.78	16.24
Merged-chrX-19163192-3	chrX	19162694	19163694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16223.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	61.21	59.44	38.85	57.35	36.39	34.56	36.97	36.7	36.22
Merged-chr9-95571679-3	chr9	95571166	95572166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	11849.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	161.32	129.94	98.05	165.98	148.82	141.47	146.81	225.95	105.55
Merged-chr13-43480356-1	chr13	43479856	43480856	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	617.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	51.48	69.12	65.67	62.75	56.91	63.5	96.11	83.13	46.84
Merged-chr4-120287922-3	chr4	120287453	120288453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194060)	promoter-TSS (NM_194060)	-692.0	NM_194060	329934.0	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	7.44	4.61	3.7	4.72	1.4	1.61	9.51	0.0	4.37
Merged-chr6-71438222-3	chr6	71437703	71438703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	2434.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	51.48	48.84	38.85	48.58	34.99	32.15	47.53	56.6	37.47
Merged-chr11-83224390-3	chr11	83223881	83224881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015519, intron 2 of 3)	intron (NR_015519, intron 2 of 3)	805.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	302.62	354.8	154.47	268.54	302.3	173.62	249.26	296.69	141.14
Merged-chr17-27042963-3	chr17	27042461	27043461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13702.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	49.77	41.01	37.92	42.51	29.86	49.83	73.93	61.9	37.47
Merged-chrM-16103-2	chrM	15625	16625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											133.86	81.56	6.47	60.05	12.6	14.47	42.25	17.69	11.24
Merged-chrX-167435065-3	chrX	167434552	167435552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52303.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	1.14	1.84	3.7	5.4	1.87	1.61	5.28	0.44	1.25
Merged-chr6-31356657-3	chr6	31356131	31357131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42142.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	19.45	18.89	10.17	31.71	16.33	42.6	22.18	14.15	14.99
Merged-chr7-126773527-1	chr7	126773027	126774027	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024228, intron 9 of 9)	ORR1A4|LTR|ERVL-MaLR	-3448.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	2.29	3.23	1.85	145.06	97.03	136.64	3.17	0.88	1.25
Merged-chr14-76755720-1	chr14	76755220	76756220	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4411.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	2.86	4.61	3.7	1.35	2.33	0.0	20.07	12.82	5.62
Merged-chr12-110447016-3	chr12	110446539	110447539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135001)	promoter-TSS (NM_001135001)	-140.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	183.63	208.27	194.24	163.28	167.01	188.89	199.62	229.93	133.65
Merged-chr11-79017437-3	chr11	79016899	79017899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 17 of 17)	intron (NM_013571, intron 17 of 17)	-6198.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	98.39	64.97	63.82	116.05	76.51	56.27	58.09	48.64	49.96
Merged-chr5-135573167-3	chr5	135572664	135573664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019577)	promoter-TSS (NM_019577)	-115.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	107.55	72.34	63.82	126.85	66.24	91.63	86.61	113.19	64.95
Merged-chr19-57273031-3	chr19	57272529	57273529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-931.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	16.59	14.75	13.87	20.92	28.92	36.17	13.73	19.9	21.23
Merged-chr10-59879950-2	chr10	59879462	59880462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	CpG	371.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	241.41	236.38	197.94	187.57	174.47	210.59	223.91	225.95	146.76
Merged-chr8-122928984-3	chr8	122928480	122929480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	80606.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	75.51	50.23	22.2	67.47	34.99	24.11	41.19	33.16	27.48
Merged-chr11-59662442-3	chr11	59661955	59662955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012027)	promoter-TSS (NM_012027)	-40.0	NM_201245	26936.0	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|Gm34094|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	32.61	28.11	32.37	45.88	34.52	34.56	40.14	25.2	20.61
Merged-chr4-149518127-3	chr4	149517622	149518622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023465)	promoter-TSS (NM_023465)	-119.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	28.03	16.13	31.45	28.34	8.86	28.13	28.52	13.71	23.73
Merged-chr3-142560554-3	chr3	142560119	142561119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289493, exon 1 of 11)	5' UTR (NM_001289493, exon 1 of 11)	263.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	148.73	162.66	97.12	168.68	125.49	127.0	157.37	191.9	96.18
Merged-chr3-119782618-1	chr3	119782118	119783118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310711, intron 1 of 13)	CpG	770.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	231.11	150.68	150.77	211.86	132.95	143.88	210.18	132.65	89.31
Merged-chr6-57581403-3	chr6	57580907	57581907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025992, intron 1 of 22)	intron (NM_025992, intron 1 of 22)	415.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	243.69	275.09	173.89	203.76	197.8	153.52	210.18	305.1	121.78
Merged-chr7-18991136-3	chr7	18990637	18991637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145579)	promoter-TSS (NM_145579)	-108.0	NM_145579	232934.0	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	6.86	4.15	5.55	4.05	3.27	3.22	4.22	13.27	2.5
Merged-chr2-98663831-3	chr2	98663329	98664329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	1196172.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	54.35	218.87	26.82	62.75	217.39	12.86	117.24	85.78	34.97
Merged-chr10-122894744-3	chr10	122894245	122895245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90979.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	16.59	10.6	3.7	17.54	5.13	14.47	11.62	6.19	6.87
Merged-chr17-31038568-3	chr17	31038079	31039079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19115.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	143.59	112.43	61.05	241.55	187.07	180.85	177.44	166.7	43.72
Merged-chr9-60847195-1	chr9	60846695	60847695	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 3 of 19)	RSINE1|SINE|B4	52753.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	3.43	4.15	7.4	14.17	8.86	3.22	7.39	2.21	0.0
Merged-chr9-78532665-3	chr9	78532150	78533150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50926.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	353.53	359.87	216.44	365.7	351.28	270.07	340.09	463.39	172.37
Merged-chr8-57541597-3	chr8	57541077	57542077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	29734.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	117.27	118.88	48.1	112.68	80.24	89.22	101.39	91.97	46.22
Merged-chr11-51619624-3	chr11	51619138	51620138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-135.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	193.35	138.24	60.12	189.6	206.2	131.02	175.33	137.07	46.22
Merged-chr12-85593169-3	chr12	85592651	85593651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-5954.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	44.62	31.33	31.45	41.16	27.52	22.51	36.97	39.35	18.74
Merged-chr3-138442760-1	chr3	138442260	138443260	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-333.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	50.91	48.84	53.65	93.79	102.63	69.93	86.61	95.95	42.47
Merged-chr6-17693990-2	chr6	17693502	17694502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289626)	promoter-TSS (NM_001289626)	8.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	237.97	209.2	159.09	226.03	153.01	157.54	195.39	106.56	82.44
Merged-chrM-11739-2	chrM	11209	12209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											211.66	235.92	15.72	130.22	53.18	30.54	121.46	34.93	28.73
Merged-chr7-16309471-3	chr7	16308941	16309941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133234)	promoter-TSS (NM_133234)	-142.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	280.31	218.41	174.82	213.89	163.28	132.63	229.19	267.95	121.78
Merged-chr11-76628821-3	chr11	76628336	76629336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43634.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	119.56	105.06	69.37	111.33	85.37	94.04	152.09	131.32	101.17
Merged-chr12-3427583-4	chr12	3427069	3428069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030694)	promoter-TSS (NR_030694)	712.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	304.9	456.64	389.41	305.65	442.25	392.25	365.44	398.39	299.15
Merged-chr4-43260345-2	chr4	43259847	43260847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-6812.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	93.82	82.94	59.2	82.32	58.78	78.77	1.06	3.1	2.5
Merged-chr14-64440684-3	chr14	64440216	64441216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026322, exon 6 of 11)	exon (NM_026322, exon 6 of 11)	310.0	NM_001253715	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	137.86	176.48	129.49	168.0	174.94	213.0	199.62	179.96	118.66
Merged-chr15-100461880-3	chr15	100461381	100462381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7130.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	224.25	208.27	81.4	147.76	118.96	79.58	200.68	214.01	100.55
Merged-chr19-6141051-3	chr19	6140549	6141549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	88.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	282.02	238.69	176.67	319.82	283.17	254.8	314.74	284.31	144.89
Merged-chr3-58576723-3	chr3	58576294	58577294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040396, exon 1 of 6)	exon (NM_001040396, exon 1 of 6)	158.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	272.87	256.2	271.94	228.05	211.33	236.31	237.64	205.17	163.0
Merged-chr4-115830730-3	chr4	115830235	115831235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175308, intron 1 of 3)	intron (NM_175308, intron 1 of 3)	2643.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	50.91	44.7	60.12	35.09	27.99	46.62	42.25	50.85	41.22
Merged-chr5-34543290-3	chr5	34542768	34543768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145858)	promoter-TSS (NM_001145858)	-97.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	53.2	69.12	99.89	74.89	44.32	95.65	58.09	51.73	48.71
Merged-chr2-136891534-3	chr2	136891061	136892061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141946)	promoter-TSS (NM_001141946)	-33.0	NR_149746	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	387.28	357.57	216.44	342.76	306.5	217.83	363.33	373.19	157.38
Merged-chr5-141084928-3	chr5	141084407	141085407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84311.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	199.07	210.12	79.55	168.68	167.48	140.66	194.34	241.87	117.41
Merged-chr4-152297195-3	chr4	152296695	152297695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037908)	promoter-TSS (NR_037908)	-19.0	NR_037908	57295.0	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	118.99	97.23	74.92	109.98	72.78	81.18	118.29	52.62	66.2
Merged-chr7-126429043-3	chr7	126428544	126429544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030566, exon 1 of 13)	5' UTR (NM_030566, exon 1 of 13)	277.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	73.79	52.07	82.32	92.44	76.04	110.12	88.72	71.63	51.84
Merged-chr17-34174271-3	chr17	34173758	34174758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13072.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	8.01	8.75	1.85	2.7	3.27	4.82	10.56	6.63	5.0
Merged-chr6-82773552-3	chr6	82773039	82774039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	CpG	915.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	185.35	168.19	153.54	215.23	247.72	172.81	240.81	247.61	122.41
Merged-chrX-136245079-3	chrX	136244563	136245563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011712)	promoter-TSS (NM_011712)	-17.0	NM_011712	22381.0	Mm.512	NM_011712	ENSMUSG00000042712	Tceal9	AL024233|Wbp5	transcription elongation factor A like 9	protein-coding	28.03	31.33	20.35	39.81	35.45	13.66	28.52	35.37	3.75
Merged-chr5-29784989-3	chr5	29784503	29785503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037940, intron 9 of 9)	intron (NM_001037940, intron 9 of 9)	-49067.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	30.89	29.49	31.45	41.16	29.39	30.54	22.18	18.13	24.98
Merged-chr7-6155640-3	chr7	6155153	6156153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	CpG	318.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	423.32	341.9	404.2	348.15	302.76	318.3	371.78	348.43	221.08
Merged-chr2-165949846-3	chr2	165949358	165950358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42779.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	89.24	59.9	59.2	116.73	39.65	54.66	82.38	77.38	79.94
Merged-chrX-7765978-3	chrX	7765467	7766467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271489, intron 2 of 9)	intron (NM_001271489, intron 2 of 9)	1926.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	22.88	31.79	51.8	58.03	47.58	81.99	28.52	26.53	21.23
Merged-chr1-171631669-3	chr1	171631157	171632157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144539)	TTS (NM_144539)	10243.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	83.52	76.03	87.87	74.22	41.05	69.13	89.78	100.37	78.07
Merged-chr17-28180953-3	chr17	28180437	28181437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172617, intron 2 of 14)	intron (NM_172617, intron 2 of 14)	3519.0	NM_172617	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	45.76	23.04	36.07	47.9	37.32	42.6	31.69	23.88	23.73
Merged-chr4-117892014-3	chr4	117891503	117892503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026344)	promoter-TSS (NM_026344)	0.0	NM_026344	67728.0	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	9.15	11.98	19.42	7.42	7.46	12.86	11.62	7.07	8.12
Merged-chr16-4877365-3	chr16	4876877	4877877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	2474.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	95.53	92.62	109.14	77.59	81.17	109.32	101.39	139.28	54.33
Merged-chr15-38284059-3	chr15	38283565	38284565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15835.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	19.45	19.35	12.95	9.45	8.86	11.25	10.56	14.59	11.87
Merged-chr12-84034254-3	chr12	84033752	84034752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-4127.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	29.75	15.21	13.87	23.62	19.13	1.61	29.57	23.43	5.62
Merged-chr12-111456053-3	chr12	111455570	111456570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13409.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	28.03	21.2	31.45	27.66	25.66	22.51	33.8	28.3	38.1
Merged-chr13-55635022-3	chr13	55634593	55635593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282055)	promoter-TSS (NM_001282055)	94.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	38.33	24.42	22.2	39.13	20.99	48.23	52.81	31.84	27.48
Merged-chr16-31947457-3	chr16	31946956	31947956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027897, exon 1 of 1)	non-coding (NR_027897, exon 1 of 1)	1065.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	292.32	233.16	167.42	268.54	266.38	169.6	249.26	331.18	161.13
Merged-chr13-12569926-3	chr13	12569412	12570412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 1 of 15)	intron (NM_026184, intron 1 of 15)	4029.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	20.59	26.26	16.65	22.94	24.26	12.86	17.96	18.13	19.36
Merged-chr16-20372258-3	chr16	20371723	20372723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-46819.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	92.1	82.02	38.85	115.38	121.76	69.93	79.21	76.94	24.98
Merged-chr19-3905556-5	chr19	3905072	3906072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016921)	promoter-TSS (NM_016921)	-342.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	114.41	73.26	86.02	97.16	63.45	87.61	146.81	129.11	74.94
Merged-chr4-124850675-3	chr4	124850150	124851150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	80.0	NM_001142727	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	334.65	249.75	308.01	276.63	192.2	227.47	277.78	141.94	162.38
Merged-chr14-75181739-3	chr14	75181231	75182231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	45306.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	94.39	98.61	85.1	119.43	57.85	84.4	118.29	124.69	74.32
Merged-chr9-86696001-1	chr9	86695501	86696501	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008615)	promoter-TSS (NM_008615)	-87.0	NM_008615	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	8.01	3.23	1.85	10.8	4.67	3.22	3.17	1.77	1.25
Merged-chr4-154011800-3	chr4	154011325	154012325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201226)	promoter-TSS (NM_201226)	22.0	NM_201226	72946.0	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	124.71	103.22	150.77	116.73	99.83	143.07	198.56	110.98	80.56
Merged-chr1-39936688-3	chr1	39936193	39937193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	35780.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	24.6	16.13	5.55	21.59	8.4	8.04	11.62	10.61	6.25
Merged-chr5-96162645-3	chr5	96162147	96163147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-657.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	257.42	224.86	164.64	264.49	221.59	167.99	223.91	216.22	159.88
Merged-chr13-75707975-3	chr13	75707450	75708450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	CpG	466.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	195.64	108.28	57.35	205.11	133.89	135.04	178.5	150.78	103.05
Merged-chr15-93398364-3	chr15	93397853	93398853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175363)	promoter-TSS (NM_175363)	3.0	NM_175363	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	230.54	219.79	188.69	250.32	186.6	198.54	194.34	212.24	143.64
Merged-chr13-58157658-3	chr13	58157144	58158144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048060)	promoter-TSS (NM_001048060)	-5.0	NM_001048060	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	75.51	79.25	89.72	68.82	51.78	83.59	86.61	74.73	61.83
Merged-chr18-70531486-3	chr18	70530987	70531987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1166.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	148.16	236.84	116.54	103.91	129.22	84.4	265.1	308.63	136.15
Merged-chr2-150837053-1	chr2	150836553	150837553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	5517.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	24.03	41.93	37.92	58.7	73.71	59.48	25.35	27.41	27.48
Merged-chr4-136602767-3	chr4	136602280	136603280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347221)	promoter-TSS (NM_001347221)	-57.0	NM_001347221	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	98.39	40.55	71.22	125.5	46.65	60.28	109.84	34.49	48.09
Merged-chr17-81712616-3	chr17	81712128	81713128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	25759.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	53.77	77.87	44.4	78.27	54.11	59.48	49.64	48.2	63.08
Merged-chr10-59265826-3	chr10	59265318	59266318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43896.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	159.6	208.27	110.99	156.53	151.62	125.39	197.51	226.39	116.79
Merged-chr13-20508718-1	chr13	20508218	20509218	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35728.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	14.3	10.6	11.1	11.47	5.6	12.86	3.17	6.19	1.25
Merged-chr11-58847139-3	chr11	58846630	58847630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6014.0	NM_146537	258530.0	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	18.31	27.19	22.2	29.01	25.66	33.76	21.12	12.82	10.62
Merged-chr6-108555095-3	chr6	108554594	108555594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65351.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	90.38	85.25	70.3	93.79	83.04	93.24	110.9	108.77	35.6
Merged-chr19-12798655-3	chr19	12798203	12799203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 1 of 8)	intron (NM_134152, intron 1 of 8)	124.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	125.28	154.82	118.39	99.86	99.37	114.94	167.93	210.03	111.17
Merged-chr2-151536866-3	chr2	151536380	151537380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5603.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	18.88	23.96	9.25	26.99	28.92	29.74	20.07	31.84	30.6
Merged-chr7-92876790-3	chr7	92876301	92877301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	1548.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	77.8	91.24	74.0	84.34	73.24	65.91	101.39	105.68	69.95
Merged-chr19-5850375-3	chr19	5849864	5850864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026169)	TTS (NM_026169)	-4884.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	200.79	152.98	75.85	177.45	138.09	118.96	170.05	136.63	64.95
Merged-chr8-35495065-3	chr8	35494532	35495532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026067, intron 1 of 6)	CpG	501.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	156.17	134.55	184.07	155.19	131.56	155.93	168.99	188.81	119.28
Merged-chr16-85099243-3	chr16	85098731	85099731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	74476.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	45.76	37.32	44.4	34.41	37.79	14.47	19.01	24.76	17.49
Merged-chr14-50931049-3	chr14	50930540	50931540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-191.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	358.11	317.02	260.84	304.97	346.15	252.39	282.0	351.52	156.76
Merged-chr8-11007255-3	chr8	11006771	11007771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046017)	promoter-TSS (NR_046017)	-579.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	40.62	32.25	1.85	51.28	26.12	19.29	23.24	7.52	5.62
Merged-chr5-99345475-3	chr5	99344941	99345941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-92514.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	148.16	153.9	120.24	168.0	100.77	124.59	137.3	164.04	87.43
Merged-chr15-55112336-3	chr15	55111832	55112832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145470)	promoter-TSS (NM_145470)	15.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	42.33	31.33	46.25	39.81	28.46	44.21	35.91	25.2	36.22
Merged-chr3-149083649-2	chr3	149083138	149084138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129003.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	25.74	30.41	25.9	35.09	45.25	56.27	7.39	6.63	3.12
Merged-chrX-71492744-3	chrX	71492242	71493242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138309, exon 1 of 9)	5' UTR (NM_138309, exon 1 of 9)	107.0	NM_138309	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	18.88	28.57	24.05	43.18	31.26	30.54	34.85	21.67	10.62
Merged-chr14-25472708-3	chr14	25472222	25473222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	13537.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	227.11	220.72	100.82	219.96	185.67	132.63	156.32	181.73	66.82
Merged-chr15-31331948-3	chr15	31331463	31332463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	35796.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	42.33	53.91	13.87	80.29	134.35	60.28	51.75	45.54	9.99
Merged-chr9-107975447-3	chr9	107974928	107975928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023738)	promoter-TSS (NM_023738)	-139.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	116.7	140.08	94.35	93.11	83.04	78.77	176.38	169.35	86.18
Merged-chr17-74295182-5	chr17	74294675	74295675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133771)	promoter-TSS (NM_133771)	-312.0	NM_133771	76890.0	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	116.13	95.38	127.64	152.49	85.37	133.43	172.16	96.83	56.21
Merged-chr2-37703401-3	chr2	37702890	37703890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15106.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	13.73	8.75	7.4	16.19	10.26	8.04	7.39	3.54	12.49
Merged-chr13-111808962-1	chr13	111808462	111809462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	31.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	296.9	140.08	191.47	296.88	112.9	120.57	215.46	88.88	101.8
Merged-chr13-46669484-3	chr13	46668985	46669985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-37.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	85.24	72.8	64.75	93.79	73.24	90.83	69.71	65.44	34.35
Merged-chr5-124492765-3	chr5	124492282	124493282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021430)	TTS (NM_021430)	9627.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	95.53	90.31	44.4	124.15	96.1	86.01	115.12	121.6	72.45
Merged-chr2-79653721-3	chr2	79653232	79654232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 9 of 17)	intron (NM_080558, intron 9 of 17)	18307.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	27.46	23.96	30.52	31.71	31.72	32.96	38.02	34.49	35.6
Merged-chr15-51877412-3	chr15	51876929	51877929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030132)	promoter-TSS (NM_030132)	-12.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	48.05	46.08	42.55	52.63	62.05	55.46	46.47	53.94	39.97
Merged-chr2-57124195-3	chr2	57123690	57124690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139509)	promoter-TSS (NM_001139509)	-187.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	45.76	23.04	14.8	80.29	41.99	58.68	67.6	39.35	29.35
Merged-chr11-6389156-3	chr11	6388647	6389647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5978.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	117.84	89.85	120.24	95.14	77.91	122.98	122.52	80.47	83.06
Merged-chr16-49854315-3	chr16	49853812	49854812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	252.85	190.3	134.12	246.95	174.01	164.78	260.88	293.16	86.18
Merged-chr3-87961037-3	chr3	87960540	87961540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10053.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	9.15	2.3	0.0	7.42	3.27	3.22	5.28	2.21	1.25
Merged-chr1-64199045-3	chr1	64198537	64199537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77648.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	96.68	128.56	103.59	94.46	77.44	94.04	118.29	136.63	99.3
Merged-chr1-39969229-3	chr1	39968730	39969730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 3 of 29)	intron (NM_001252202, intron 3 of 29)	68317.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	10.3	5.99	3.7	14.84	2.33	4.82	9.51	2.21	6.25
Merged-chr17-65613774-6	chr17	65613264	65614264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-209.0	NM_013933	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	326.64	239.15	271.01	348.15	285.97	265.25	311.57	244.52	220.46
Merged-chr4-97772311-3	chr4	97771799	97772799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	CpG	-5327.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	132.14	98.15	69.37	103.23	51.32	88.42	132.02	127.79	92.43
Merged-chr15-10887625-3	chr15	10887134	10888134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58583.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	36.61	28.57	17.57	35.09	16.33	36.17	33.8	27.86	24.98
Merged-chr15-102399741-3	chr15	102399221	102400221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6595.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	221.38	252.05	172.04	236.15	173.07	162.37	185.89	207.82	175.49
Merged-chr10-127288479-2	chr10	127287973	127288973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347171, intron 1 of 12)	intron (NM_001347171, intron 1 of 12)	545.0	NM_001347171	110962.0	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	149.31	74.65	147.99	96.48	80.71	93.24	121.46	80.92	86.18
Merged-chr6-38690770-3	chr6	38690274	38691274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27705.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	66.93	64.51	29.6	88.39	87.7	42.6	60.2	54.83	26.23
Merged-chr10-49050166-2	chr10	49049668	49050668	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	737769.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	12.59	12.44	11.1	86.36	49.92	51.44	45.42	40.24	15.61
Merged-chr7-44985694-3	chr7	44985185	44986185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045521, intron 1 of 11)	intron (NR_045521, intron 1 of 11)	735.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	96.11	82.02	81.4	79.62	64.84	72.34	68.65	74.28	58.71
Merged-chr2-156179620-3	chr2	156179130	156180130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291115)	promoter-TSS (NM_001291115)	-50.0	NM_001291115	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	560.04	518.38	337.61	525.6	480.5	340.81	404.52	453.22	248.56
Merged-chr4-26346880-3	chr4	26346417	26347417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-265.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	88.1	94.0	98.97	68.15	76.51	94.04	86.61	69.86	67.45
Merged-chr2-127182996-3	chr2	127182492	127183492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25288.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	28.6	47.92	35.15	36.43	41.52	32.96	119.35	133.53	99.3
Merged-chr16-4886166-3	chr16	4885689	4886689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357061)	promoter-TSS (NM_001357061)	89.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	215.09	214.26	146.14	194.99	174.01	131.82	267.21	221.97	149.26
Merged-chr5-140704910-3	chr5	140704407	140705407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276287)	promoter-TSS (NM_001276287)	-104.0	NM_181066	231841.0	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	75.51	103.68	102.67	80.29	71.84	118.16	114.07	108.77	57.46
Merged-chr5-139736410-3	chr5	139735916	139736916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174850)	promoter-TSS (NM_174850)	-83.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	47.48	32.72	43.47	54.65	25.19	33.76	77.1	75.61	30.6
Merged-chr17-25133428-3	chr17	25132915	25133915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011930)	promoter-TSS (NM_011930)	24.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	198.5	190.3	132.27	257.74	249.58	122.18	270.38	261.76	101.17
Merged-chr11-74837786-3	chr11	74837218	74838218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010813, exon 4 of 6)	exon (NM_010813, exon 4 of 6)	6794.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	383.85	310.57	262.69	376.49	229.06	231.49	312.63	321.46	144.27
Merged-chr11-6444215-2	chr11	6443709	6444709	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029938, intron 1 of 4)	CpG	234.0	NM_029938	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	161.32	138.7	70.3	128.87	105.9	83.59	122.52	115.85	64.95
Merged-chr1-6215091-1	chr1	6214591	6215591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009826, intron 1 of 23)	CpG	429.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	216.81	205.97	185.92	180.15	229.52	231.49	185.89	147.68	114.29
Merged-chr7-90019747-3	chr7	90019249	90020249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9410.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	122.42	98.15	87.87	130.22	67.64	106.1	100.34	83.13	61.2
Merged-chr13-30645801-3	chr13	30645287	30646287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-14272.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	72.65	103.22	78.62	80.97	97.97	65.11	101.39	114.96	70.57
Merged-chr3-36151024-3	chr3	36150518	36151518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101478)	promoter-TSS (NM_001101478)	-62.0	NM_001101478	241944.0	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	20.02	8.29	31.45	21.59	10.73	4.82	13.73	11.94	14.36
Merged-chr14-55713588-3	chr14	55713071	55714071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161715)	promoter-TSS (NM_001161715)	-79.0	NM_001161715	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	19.45	22.12	20.35	12.82	15.39	34.56	31.69	17.24	21.23
Merged-chr9-90233516-3	chr9	90233024	90234024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	171.04	178.78	113.77	194.32	111.5	126.19	172.16	152.55	113.04
Merged-chr3-97993742-3	chr3	97993234	97994234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19804.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	35.47	47.46	42.55	65.45	45.25	48.23	60.2	49.52	38.72
Merged-chr10-82958514-3	chr10	82958028	82959028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26969.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	38.33	20.74	3.7	31.71	21.46	17.68	11.62	9.73	11.87
Merged-chr2-165987141-1	chr2	165986641	165987641	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5496.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	76.66	51.61	46.25	86.36	39.65	68.32	134.14	112.75	99.3
Merged-chr10-95300408-3	chr10	95299897	95300897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	23312.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	219.1	150.22	120.24	184.2	132.02	122.98	195.39	216.66	117.41
Merged-chr6-128760170-3	chr6	128759649	128760649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	28492.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	163.61	184.31	142.44	149.79	164.21	137.45	108.79	175.1	63.08
Merged-chr10-67098631-3	chr10	67098132	67099132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1644.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	20.02	15.67	5.55	39.81	13.53	6.43	22.18	19.9	10.62
Merged-chr12-100837425-3	chr12	100836920	100837920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 3 of 12)	ORR1F|LTR|ERVL-MaLR	58363.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	34.32	43.31	18.5	20.24	14.0	11.25	44.36	33.6	13.74
Merged-chr10-99926751-3	chr10	99926231	99927231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89090.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	26.89	31.33	35.15	34.41	19.59	16.08	24.29	30.95	28.73
Merged-chr19-18670744-3	chr19	18670249	18671249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026120)	promoter-TSS (NM_026120)	-31.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	145.3	66.35	101.74	104.58	60.18	73.95	107.73	55.71	47.46
Merged-chr2-71027098-3	chr2	71026589	71027589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	RLTR30B_MM|LTR|ERV1	-8715.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	20.02	31.79	17.57	42.51	27.06	36.97	42.25	45.99	29.98
Merged-chr19-59074982-3	chr19	59074477	59075477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	1092.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	145.87	150.22	110.07	117.4	126.89	144.68	114.07	134.42	104.92
Merged-chr3-96594206-3	chr3	96593716	96594716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293701)	promoter-TSS (NM_001293701)	-35.0	NM_001293701	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	87.52	72.34	78.62	118.08	80.24	87.61	135.19	147.68	64.95
Merged-chr3-121953205-3	chr3	121952710	121953710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172525)	promoter-TSS (NM_172525)	-19.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	16.02	9.68	1.85	7.42	8.4	10.45	24.29	11.94	8.74
Merged-chr13-111418216-3	chr13	111417707	111418707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	71920.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	6.86	10.14	22.2	10.12	14.46	11.25	9.51	7.96	6.25
Merged-chr14-98814025-1	chr14	98813525	98814525	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	232111.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	9.72	6.45	1.85	21.59	7.0	9.65	4.22	6.63	2.5
Merged-chr17-27932540-2	chr17	27932040	27933040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	URR1A|DNA|hAT-Charlie	23234.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	38.33	41.01	26.82	64.77	64.84	71.54	23.24	19.46	14.99
Merged-chr5-125391793-3	chr5	125391308	125392308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1791.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	429.04	533.59	252.51	396.73	553.75	305.44	453.1	657.06	261.68
Merged-chr2-92434190-3	chr2	92433683	92434683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-114.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	219.67	180.63	93.42	185.55	212.73	181.66	160.54	199.42	117.41
Merged-chr19-8802349-3	chr19	8801791	8802791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098237)	promoter-TSS (NM_001098237)	-205.0	NM_133759	75291.0	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	68.07	57.6	49.02	48.58	39.19	97.26	78.16	59.69	44.34
Merged-chr7-19694002-1	chr7	19693502	19694502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1343.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	71.51	77.41	65.67	90.41	54.58	94.85	117.24	122.48	69.95
Merged-chr11-120632798-4	chr11	120632313	120633313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	CpG	734.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	494.83	362.18	343.16	495.92	341.48	304.64	412.97	367.0	238.57
Merged-chr9-44084865-3	chr9	44084368	44085368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-52.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	185.35	155.28	101.74	190.95	156.28	127.8	196.45	154.76	87.43
Merged-chr4-142094506-3	chr4	142094009	142095009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10205.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	184.77	158.51	107.29	182.85	103.1	105.3	101.39	76.05	13.74
Merged-chr13-54503731-3	chr13	54503227	54504227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176987)	promoter-TSS (NM_176987)	-78.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	46.91	19.35	21.27	37.11	26.59	40.99	32.74	22.11	19.98
Merged-chr7-127876185-3	chr7	127875652	127876652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-510.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	88.1	120.73	214.59	145.74	159.55	221.04	152.09	136.19	115.54
Merged-chr16-94370329-2	chr16	94369826	94370826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159620)	promoter-TSS (NM_001159620)	4.0	NM_001159619	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	139.58	135.93	139.67	152.49	136.69	158.35	178.5	138.4	87.43
Merged-chr7-110221758-3	chr7	110221269	110222269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	66.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	167.04	169.11	137.82	174.75	184.27	204.16	216.52	200.3	134.9
Merged-chr16-25011149-3	chr16	25010656	25011656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48483.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	39.47	44.24	54.57	76.92	65.31	77.97	70.76	83.57	54.33
Merged-chr9-21546245-3	chr9	21545762	21546762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021531)	promoter-TSS (NM_021531)	-632.0	NM_021531	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	66.36	76.03	92.5	95.81	66.24	86.01	82.38	99.49	72.45
Merged-chr18-62977871-3	chr18	62977414	62978414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	-2.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	143.01	182.01	166.49	150.46	162.34	147.9	168.99	186.59	97.43
Merged-chr3-36449504-2	chr3	36449018	36450018	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 12 of 12)	intron (NM_009673, intron 12 of 12)	26006.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	9.15	7.83	6.47	22.27	15.86	21.7	14.79	27.86	19.98
Merged-chr19-3847634-3	chr19	3847129	3848129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4144.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	18.31	17.51	11.1	19.57	8.86	12.86	24.29	13.27	6.25
Merged-chr11-120630648-3	chr11	120630141	120631141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2906.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	204.8	185.24	119.32	176.78	168.41	201.75	165.82	238.77	112.42
Merged-chr8-125845467-3	chr8	125844945	125845945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-52469.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	48.62	35.94	26.82	74.89	46.18	49.83	58.09	60.13	29.98
Merged-chr9-21167827-3	chr9	21167304	21168304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	2090.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	266.58	274.17	172.97	232.1	232.79	194.52	207.01	353.73	163.0
Merged-chr13-6647860-3	chr13	6647358	6648358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	913.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	98.97	106.44	86.95	95.14	98.9	83.59	87.66	97.72	43.72
Merged-chr15-86170833-3	chr15	86170333	86171333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-14895.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	139.01	137.77	146.14	240.2	170.74	189.69	216.52	177.75	126.78
Merged-chr4-155992489-3	chr4	155991991	155992991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011341)	promoter-TSS (NM_011341)	187.0	NM_080445	117592.0	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	138.44	120.73	110.07	136.97	86.77	118.16	135.19	102.14	64.95
Merged-chr7-81863362-3	chr7	81862851	81863851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291282, intron 2 of 9)	intron (NM_001291282, intron 2 of 9)	664.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	117.84	93.54	120.24	101.21	79.77	99.67	87.66	72.96	63.08
Merged-chr8-92853704-3	chr8	92853216	92854216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008610)	TTS (NM_008610)	-1617.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	200.79	193.53	179.44	161.93	116.16	141.47	182.72	233.46	147.39
Merged-chr7-45814468-3	chr7	45813958	45814958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112701)	promoter-TSS (NM_001112701)	-142.0	NM_001112701	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	161.89	168.19	139.67	126.17	90.5	97.26	123.57	79.59	73.07
Merged-chr7-43544606-5	chr7	43544105	43545105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-11434.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	21.17	39.63	31.45	50.6	37.32	43.4	39.08	26.53	36.85
Merged-chr10-68275052-3	chr10	68274532	68275532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3694.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	249.99	235.46	74.0	258.42	230.46	102.88	190.11	263.53	95.55
Merged-chr13-41460080-3	chr13	41459577	41460577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	27283.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	69.22	75.57	51.8	70.85	62.05	73.14	73.93	68.09	37.47
Merged-chr8-3209455-1	chr8	3208955	3209955	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 3 of 21)	intron (NM_001330056, intron 3 of 21)	70162.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	10.87	5.99	2.77	6.07	1.87	11.25	3.17	3.54	6.25
Merged-chr10-70197859-3	chr10	70197353	70198353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6811.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	86.38	84.78	63.82	80.29	60.65	87.61	94.0	71.63	63.08
Merged-chrX-106136384-3	chrX	106135804	106136804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6971.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	191.07	147.45	120.24	171.38	124.56	101.28	157.37	165.81	86.18
Merged-chr4-86857373-3	chr4	86856863	86857863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009096)	promoter-TSS (NM_009096)	4.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	256.85	253.43	197.02	256.39	278.97	192.91	220.74	234.35	156.76
Merged-chr4-40845136-3	chr4	40844626	40845626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5012.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	271.73	259.88	213.66	273.94	175.87	194.52	238.7	277.68	127.4
Merged-chr5-65476027-3	chr5	65475529	65476529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	16806.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	64.07	72.34	71.22	64.77	47.58	66.71	80.27	68.09	66.2
Merged-chr11-74831392-3	chr11	74830903	74831903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	CpG-2219	479.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	594.36	614.69	381.08	597.13	563.54	454.14	499.58	632.3	291.03
Merged-chr11-59525438-3	chr11	59524940	59525940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16129.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	28.03	26.26	30.52	35.09	20.53	30.54	28.52	38.03	21.23
Merged-chr4-148591389-3	chr4	148590836	148591836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009272)	promoter-TSS (NM_009272)	-177.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	63.5	48.38	45.32	68.15	62.05	77.97	76.05	44.22	35.6
Merged-chr5-122269433-3	chr5	122268949	122269949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4989.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	40.04	53.91	48.1	34.41	22.39	40.99	88.72	64.56	36.22
Merged-chr11-21371299-3	chr11	21370790	21371790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139297)	promoter-TSS (NM_139297)	-23.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	120.7	87.55	86.95	128.87	74.17	115.75	132.02	95.95	70.57
Merged-chr9-90431150-3	chr9	90430660	90431660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160391.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	10.87	12.44	4.62	10.8	11.2	10.45	9.51	7.52	19.98
Merged-chr3-95230010-3	chr3	95229528	95230528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1085.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	227.11	208.27	123.94	178.13	147.88	163.17	240.81	224.62	153.63
Merged-chr11-103320426-3	chr11	103319942	103320942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24260.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	20.02	12.9	7.4	14.84	4.2	4.82	23.24	6.19	7.49
Merged-chr12-81719379-3	chr12	81718904	81719904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61766.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	30.32	39.63	20.35	29.01	28.46	32.15	21.12	18.57	16.86
Merged-chr16-11140815-3	chr16	11140308	11141308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145931, exon 21 of 23)	exon (NM_145931, exon 21 of 23)	-6276.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	42.9	48.38	54.57	59.38	41.05	45.01	48.58	42.01	51.21
Merged-chr10-8858861-3	chr10	8858358	8859358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27212.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	256.85	157.13	128.57	246.27	195.0	131.02	223.91	217.55	97.43
Merged-chr16-44347549-3	chr16	44347062	44348062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144550, intron 1 of 17)	CpG	161.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	95.53	70.96	110.07	105.93	88.17	86.01	92.94	79.15	88.68
Merged-chr11-53796955-3	chr11	53796455	53797455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	26482.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	97.82	89.39	93.42	107.28	87.7	81.99	97.17	103.91	59.95
Merged-chr6-134045155-3	chr6	134044668	134045668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	9468.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	104.69	125.33	121.17	114.03	74.64	108.51	137.3	146.36	86.18
Merged-chr8-73849982-1	chr8	73849482	73850482	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-496442.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.15	9.22	1.85	20.24	21.93	22.51	12.67	12.82	6.25
Merged-chr12-108937052-3	chr12	108936545	108937545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	42773.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	68.65	44.24	14.8	109.98	105.9	148.7	127.8	68.98	64.33
Merged-chr17-32336083-3	chr17	32335565	32336565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017476, intron 6 of 13)	intron (NM_017476, intron 6 of 13)	14512.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	18.31	13.36	31.45	17.54	9.33	25.72	17.96	11.5	12.49
Merged-chr4-43925833-3	chr4	43925328	43926328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016678, intron 12 of 20)	intron (NM_016678, intron 12 of 20)	-31874.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	42.9	23.5	23.12	25.64	13.06	8.04	14.79	18.13	14.99
Merged-chr10-125370293-3	chr10	125369799	125370799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-41336.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	190.49	206.43	59.2	172.73	203.4	122.18	198.56	221.97	84.31
Merged-chr16-44139175-3	chr16	44138664	44139664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028108)	promoter-TSS (NM_028108)	95.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	541.16	439.13	295.06	576.88	414.73	321.52	407.69	572.61	228.58
Merged-chr5-107986367-3	chr5	107985858	107986858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	MamSINE1|SINE|tRNA	719.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	90.96	92.62	66.6	90.41	79.31	86.01	71.82	66.77	76.82
Merged-chr17-47220034-3	chr17	47219489	47220489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	LTR33|LTR|ERVL	-10241.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	149.88	130.4	120.24	130.9	120.36	154.33	121.46	155.2	101.17
Merged-chr10-80928665-3	chr10	80928152	80929152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	162.46	141.46	85.1	147.76	123.16	82.79	140.47	145.47	71.82
Merged-chr11-17002634-3	chr11	17002145	17003145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	6073.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	242.55	192.15	141.52	208.49	127.82	147.9	136.25	156.53	132.4
Merged-chr10-75326775-3	chr10	75326265	75327265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	1907.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	5.15	5.53	7.4	3.37	4.67	3.22	3.17	8.84	3.75
Merged-chr10-61147679-3	chr10	61147176	61148176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316674)	promoter-TSS (NM_001316674)	8.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	400.44	253.43	295.99	346.8	210.86	266.05	326.36	260.88	171.75
Merged-chr12-73286821-3	chr12	73286324	73287324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029580)	promoter-TSS (NM_029580)	-24.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	177.91	179.71	143.37	158.56	185.67	163.17	127.8	173.77	108.67
Merged-chr14-102983336-3	chr14	102982827	102983827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-690.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	216.81	239.15	171.12	211.19	172.61	171.21	162.65	249.38	132.4
Merged-chr11-32558293-3	chr11	32557778	32558778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	MER5A|DNA|hAT-Charlie	25012.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	192.78	168.65	118.39	180.82	142.29	167.19	185.89	157.85	130.53
Merged-chr16-35764213-3	chr16	35763723	35764723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	5133.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	65.79	59.9	47.17	62.07	49.92	73.95	39.08	40.24	31.23
Merged-chr5-146299675-3	chr5	146299162	146300162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359990, intron 11 of 12)	intron (NM_001359990, intron 11 of 12)	68412.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	16.59	13.36	11.1	12.14	12.13	13.66	13.73	9.29	11.24
Merged-chr19-9952534-3	chr19	9952021	9953021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28079.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	123.56	144.69	104.52	161.93	149.28	146.29	216.52	261.32	126.15
Merged-chr10-59736220-3	chr10	59735721	59736721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	33658.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	73.79	81.56	71.22	99.86	87.7	108.51	55.98	79.59	48.09
Merged-chr1-183297237-3	chr1	183296751	183297751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	42.0	NM_001357242	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	139.58	141.46	138.74	141.02	152.08	145.49	189.06	180.85	114.29
Merged-chr2-75775402-3	chr2	75774893	75775893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56784.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	144.16	114.74	74.92	109.98	65.31	69.13	133.08	130.0	113.66
Merged-chr3-75297180-3	chr3	75296670	75297670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27092.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	58.92	76.03	50.87	57.35	51.32	38.58	51.75	71.19	48.09
Merged-chr6-8259237-3	chr6	8258741	8259741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026632)	promoter-TSS (NM_026632)	-47.0	NM_001302354	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	74.94	83.4	66.6	74.89	72.78	56.27	80.27	68.98	58.08
Merged-chr15-27883048-3	chr15	27882559	27883559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	142789.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	33.18	28.11	17.57	49.25	41.05	27.33	23.24	30.95	13.74
Merged-chr3-88138870-3	chr3	88138402	88139402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	399.87	423.46	342.23	463.53	437.58	338.39	445.71	523.53	237.32
Merged-chr8-94180149-3	chr8	94179642	94180642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013602, exon 3 of 3)	exon (NM_013602, exon 3 of 3)	1053.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	158.46	134.55	66.6	189.6	160.01	127.8	119.35	142.82	76.82
Merged-chr3-88603936-3	chr3	88603432	88604432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12275.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	54.35	64.51	57.35	72.87	51.78	72.34	64.43	60.58	31.85
Merged-chr7-140947155-3	chr7	140946662	140947662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153832, exon 12 of 12)	non-coding (NR_153832, exon 12 of 12)	3077.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	117.84	79.72	47.17	105.93	83.97	58.68	67.6	52.62	39.35
Merged-chrX-7947978-3	chrX	7947471	7948471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010413)	promoter-TSS (NM_010413)	-82.0	NM_010413	15185.0	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	40.04	20.27	33.3	46.56	52.25	47.42	49.64	45.1	29.98
Merged-chr15-76287847-3	chr15	76287337	76288337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028852, intron 4 of 4)	intron (NM_028852, intron 4 of 4)	3131.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	108.12	104.14	104.52	103.91	90.97	121.37	128.85	126.9	83.69
Merged-chr19-29253970-3	chr19	29253474	29254474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	2171.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	69.79	58.98	58.27	52.63	37.79	50.64	65.48	71.63	54.96
Merged-chr12-78862104-3	chr12	78861572	78862572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026114)	promoter-TSS (NM_026114)	0.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	177.34	163.58	100.82	188.25	160.01	152.72	212.29	179.08	88.06
Merged-chr2-173218986-3	chr2	173218495	173219495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021394)	promoter-TSS (NM_021394)	-73.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	132.72	165.88	110.07	102.56	104.96	103.69	255.6	281.22	110.54
Merged-chr14-77874836-3	chr14	77874309	77875309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025384, exon 1 of 6)	exon (NM_025384, exon 1 of 6)	108.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	73.79	61.75	49.02	80.97	83.97	55.46	188.0	190.57	85.56
Merged-chr7-80246360-3	chr7	80245844	80246844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-32.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	40.62	51.61	22.2	36.43	43.39	40.19	48.58	34.05	23.73
Merged-chr3-159495401-3	chr3	159494898	159495898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029523)	promoter-TSS (NM_029523)	-35.0	NM_029523	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	21.74	16.59	5.55	15.52	6.53	4.02	21.12	19.46	13.74
Merged-chr6-108658154-3	chr6	108657662	108658662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2467.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	255.71	226.71	118.39	271.91	194.53	142.27	114.07	133.53	45.59
Merged-chr5-135707978-3	chr5	135707485	135708485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	18840.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	186.49	118.42	129.49	255.72	190.8	172.81	171.1	174.21	99.92
Merged-chr1-55027521-3	chr1	55027028	55028028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031179)	promoter-TSS (NM_031179)	-50.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	401.01	411.48	270.09	399.43	381.14	257.21	343.26	301.12	185.48
Merged-chr11-89060824-3	chr11	89060340	89061340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	89.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	54.35	32.25	35.15	24.29	17.26	16.08	35.91	30.51	14.99
Merged-chr15-100126887-3	chr15	100126388	100127388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-27508.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	40.62	16.13	16.65	43.18	23.33	14.47	34.85	24.76	13.12
Merged-chr12-32132066-3	chr12	32131586	32132586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70807.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	13.73	18.43	16.65	12.82	8.86	28.94	23.24	15.92	7.49
Merged-chr14-17902588-3	chr14	17902098	17903098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	MIR3|SINE|MIR	-79046.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	68.65	60.36	47.17	68.82	52.72	80.38	105.62	83.13	60.58
Merged-chr5-5559550-3	chr5	5559045	5560045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357031)	promoter-TSS (NM_001357031)	-4.0	NM_001357031	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	60.07	66.35	43.47	71.52	89.57	60.28	66.54	69.42	27.48
Merged-chr5-121564588-3	chr5	121564099	121565099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18707.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	9.15	12.9	16.65	20.24	20.99	12.86	14.79	10.61	8.74
Merged-chr15-59807948-3	chr15	59807442	59808442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12983.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	122.99	84.32	71.22	110.65	71.84	69.93	98.23	101.7	60.58
Merged-chr18-61399029-3	chr18	61398487	61399487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	CpG	-1087.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	179.05	122.11	197.02	137.64	132.95	139.06	207.01	152.55	109.92
Merged-chr2-90574383-3	chr2	90573894	90574894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	6253.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	240.83	153.9	156.32	217.93	113.83	133.43	166.88	159.18	104.92
Merged-chr10-68125210-3	chr10	68124705	68125705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	145635.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	62.35	49.76	45.32	54.65	56.91	57.87	61.26	53.06	23.73
Merged-chr15-12233256-3	chr15	12232743	12233743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 3 of 15)	intron (NM_001356498, intron 3 of 15)	28215.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	47.48	37.32	19.42	49.93	38.25	25.72	36.97	23.43	33.1
Merged-chr10-93124378-3	chr10	93123800	93124800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36576.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	73.79	65.43	18.5	83.66	81.17	92.44	183.78	194.55	94.3
Merged-chr9-7764819-3	chr9	7764325	7765325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	660.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	184.77	176.94	136.89	176.78	193.13	105.3	154.2	169.79	104.92
Merged-chr15-75940993-3	chr15	75940488	75941488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030199)	promoter-TSS (NM_030199)	36.0	NM_030199	78834.0	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	54.92	51.61	48.1	51.28	46.65	52.25	52.81	37.58	33.1
Merged-chr13-42052111-1	chr13	42051611	42052611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007772)	promoter-TSS (NM_007772)	90.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	352.96	226.25	236.79	317.79	173.54	170.4	283.06	177.31	133.02
Merged-chr11-3162171-2	chr11	3161666	3162666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	31297.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	60.64	88.93	95.27	66.8	92.37	121.37	10.56	11.5	106.17
Merged-chr4-99120963-3	chr4	99120445	99121445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290636)	promoter-TSS (NM_001290636)	-30.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	93.24	62.67	72.15	93.79	65.78	80.38	156.32	54.39	41.84
Merged-chr4-24898049-3	chr4	24897588	24898588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026742)	promoter-TSS (NM_026742)	5.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	38.9	47.92	31.45	51.28	52.72	32.96	58.09	57.04	43.72
Merged-chr2-164359897-3	chr2	164359409	164360409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3402.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	40.04	22.58	20.35	36.43	29.39	16.08	34.85	20.78	8.12
Merged-chr1-84539361-1	chr1	84538861	84539861	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-156478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	9.15	3.23	1.85	4.72	2.33	4.82	6.34	1.77	11.87
Merged-chr7-5102780-1	chr7	5102280	5103280	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14131.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	13.73	29.49	38.85	22.27	27.99	68.32	19.01	30.95	39.35
Merged-chr16-70811037-3	chr16	70810547	70811547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194622.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	33.75	35.48	24.97	40.48	30.32	37.78	34.85	51.73	19.98
Merged-chr8-68914691-3	chr8	68914176	68915176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34121.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	49.77	35.48	28.67	81.64	29.86	35.37	62.31	49.08	29.35
Merged-chr1-57995981-3	chr1	57995472	57996472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199007)	promoter-TSS (NM_199007)	-2.0	NM_199007	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	22.31	28.11	19.42	15.52	22.39	32.15	21.12	18.57	17.49
Merged-chr9-42472217-3	chr9	42471687	42472687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173038)	promoter-TSS (NM_173038)	71.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	67.5	51.15	48.1	64.1	62.05	63.5	52.81	58.81	50.59
Merged-chr2-69790512-3	chr2	69789997	69790997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028521, intron 2 of 3)	intron (NM_028521, intron 2 of 3)	760.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	102.4	146.07	54.57	90.41	111.5	79.58	118.29	172.89	71.82
Merged-chr12-85478426-2	chr12	85477957	85478957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4567.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	26.31	12.9	3.7	24.96	4.67	14.47	6.34	3.98	2.5
Merged-chr18-4908344-3	chr18	4907840	4908840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95854.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	34.9	64.05	46.25	42.51	53.65	75.56	41.19	31.39	36.22
Merged-chr12-51971393-3	chr12	51970907	51971907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-86.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	92.1	79.72	69.37	100.53	78.37	95.65	139.42	118.5	56.83
Merged-chr13-108316293-3	chr13	108315857	108316857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178683)	promoter-TSS (NM_178683)	20.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	20.02	24.42	22.2	28.34	20.06	25.72	28.52	24.32	13.74
Merged-chr1-165460581-3	chr1	165460082	165461082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027430)	promoter-TSS (NM_027430)	-119.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	297.47	319.78	233.09	273.94	251.91	200.14	261.93	320.57	168.62
Merged-chr5-91000137-3	chr5	90999637	91000637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	-27380.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	24.03	17.97	20.35	24.96	16.79	28.94	13.73	14.59	28.1
Merged-chr9-110656555-3	chr9	110656065	110657065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028312)	promoter-TSS (NM_028312)	62.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	179.05	190.76	90.65	149.79	125.02	134.23	193.28	234.79	101.17
Merged-chr18-39196742-3	chr18	39196227	39197227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	203582.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	55.49	79.72	39.77	77.59	41.05	53.85	48.58	52.18	43.09
Merged-chr9-31247605-3	chr9	31247096	31248096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23805.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	26.89	43.31	24.97	38.46	34.52	28.13	43.3	28.3	24.98
Merged-chr8-105605206-3	chr8	105604712	105605712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081241)	promoter-TSS (NM_001081241)	-17.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	99.54	72.34	59.2	66.8	54.58	61.09	57.03	60.58	48.71
Merged-chr17-69226169-3	chr17	69225674	69226674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	RLTR16|LTR|ERVK	51032.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	69.79	54.37	58.27	55.33	55.05	45.01	86.61	91.09	43.09
Merged-chr13-104139771-3	chr13	104139261	104140261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361054, exon 11 of 11)	exon (NM_001361054, exon 11 of 11)	30020.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	18.31	22.58	11.1	18.89	20.99	11.25	30.63	19.9	16.24
Merged-chr16-92440368-3	chr16	92439836	92440836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25833.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	80.09	66.81	53.65	97.16	67.18	59.48	41.19	34.05	33.72
Merged-chr8-108985062-3	chr8	108984560	108985560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48200.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	157.31	162.2	76.77	147.76	101.7	70.73	160.54	174.21	82.44
Merged-chr10-21890527-3	chr10	21890047	21891047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	ID_B1|SINE|B4	8363.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	45.19	30.87	36.07	63.42	26.12	62.7	62.31	38.91	35.6
Merged-chr4-132757221-3	chr4	132756714	132757714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133888)	promoter-TSS (NM_133888)	-43.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	48.62	52.99	38.85	38.46	31.26	45.01	32.74	33.6	19.98
Merged-chr1-151345269-3	chr1	151344757	151345757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039511, intron 1 of 7)	CpG	759.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	140.15	129.02	142.44	126.17	144.62	139.86	149.98	152.99	117.41
Merged-chr12-55491938-3	chr12	55491461	55492461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010907, intron 1 of 5)	intron (NM_010907, intron 1 of 5)	686.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	349.52	248.82	205.34	376.49	205.73	215.42	317.91	349.31	175.49
Merged-chr10-88441406-3	chr10	88440910	88441910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 19 of 20)	L1MB5|LINE|L1	-18177.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	73.79	104.6	88.8	97.16	90.5	64.3	100.34	122.92	82.44
Merged-chr5-30920739-3	chr5	30920234	30921234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001349066)	promoter-TSS (NM_001349066)	-825.0	NM_001310525	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	85.81	91.24	80.47	105.93	93.77	124.59	104.56	114.08	74.32
Merged-chrX-163302877-3	chrX	163302380	163303380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	49684.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	28.6	36.4	25.9	22.27	16.79	38.58	38.02	37.14	25.61
Merged-chr7-89981159-3	chr7	89980651	89981651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021876)	promoter-TSS (NM_021876)	-175.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	249.99	260.34	188.69	254.37	240.72	186.48	301.01	299.35	186.11
Merged-chr8-78508528-3	chr8	78507991	78508991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029736)	promoter-TSS (NM_029736)	77.0	NM_001358975	19656.0	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	438.19	517.46	297.84	361.65	452.05	299.01	386.56	423.15	172.99
Merged-chr5-100615718-1	chr5	100615218	100616218	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43513.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	12.01	9.22	5.55	5.4	6.53	8.04	16.9	15.48	16.86
Merged-chr3-60528399-3	chr3	60527894	60528894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	27215.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	143.59	153.9	99.89	118.75	99.37	88.42	158.43	157.41	74.32
Merged-chr14-17902208-2	chr14	17901708	17902708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-79436.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	58.92	54.37	34.22	45.21	43.39	57.07	86.61	72.96	53.71
Merged-chr3-87017226-3	chr3	87016747	87017747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-17907.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	118.42	133.17	98.97	81.64	72.31	72.34	121.46	95.95	57.46
Merged-chr4-116788248-3	chr4	116787759	116788759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	19300.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	27.46	28.11	33.3	37.78	25.19	49.83	27.46	39.35	26.23
Merged-chr11-62756960-3	chr11	62756459	62757459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27866.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	9.15	5.53	1.85	6.07	8.4	0.0	6.34	1.77	5.0
Merged-chr8-126565448-3	chr8	126564944	126565944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27992.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	197.36	136.85	72.15	250.32	171.21	95.65	123.57	124.69	39.35
Merged-chr1-177490005-3	chr1	177489526	177490526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44205.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	20.02	15.67	23.12	14.17	12.6	18.49	24.29	21.22	13.74
Merged-chr19-4811724-3	chr19	4811232	4812232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019869)	promoter-TSS (NM_019869)	-98.0	NM_019869	56275.0	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	278.02	275.09	184.99	246.95	271.04	259.62	257.71	270.61	184.24
Merged-chr11-120573116-3	chr11	120572603	120573603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011032, exon 1 of 11)	5' UTR (NM_011032, exon 1 of 11)	150.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	290.03	223.02	160.94	278.66	245.85	225.86	229.19	217.99	123.03
Merged-chr18-80294871-3	chr18	80294378	80295378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001190373, exon 4 of 4)	3' UTR (NM_001190373, exon 4 of 4)	38572.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	8.58	9.22	12.95	8.1	4.67	10.45	10.56	7.07	5.0
Merged-chr1-178405680-3	chr1	178405183	178406183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026626)	promoter-TSS (NM_026626)	-335.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	362.11	433.6	288.59	370.42	437.58	330.36	316.86	370.54	257.93
Merged-chr19-29251367-3	chr19	29250864	29251864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-439.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	227.11	154.82	157.24	213.21	118.96	140.66	165.82	112.31	101.8
Merged-chr6-123259923-1	chr6	123259423	123260423	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2184.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	12.01	13.36	4.62	46.56	27.99	16.88	14.79	17.69	15.61
Merged-chr9-73089781-3	chr9	73089274	73090274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-12624.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	13.16	14.28	18.5	23.62	18.66	26.53	17.96	13.27	13.74
Merged-chr3-137942412-3	chr3	137941920	137942920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23865.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	47.48	46.54	32.37	43.86	29.86	10.45	36.97	32.72	18.74
Merged-chr10-80433668-3	chr10	80433131	80434131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164151)	promoter-TSS (NM_001164151)	22.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	135.58	87.09	72.15	91.76	57.38	69.13	132.02	72.07	63.7
Merged-chr5-144255196-3	chr5	144254691	144255691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018772)	promoter-TSS (NM_018772)	-34.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	251.7	217.49	273.79	285.41	182.87	241.94	315.8	193.67	141.77
Merged-chrX-167326396-3	chrX	167325902	167326902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	4169.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	54.35	51.15	34.22	53.98	46.65	39.39	50.7	68.09	33.1
Merged-chr10-17947415-3	chr10	17946919	17947919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	CpG	648.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	153.31	107.36	107.29	144.39	112.43	135.04	142.59	90.64	68.7
Merged-chr7-27537428-3	chr7	27536922	27537922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	14161.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	118.99	96.76	70.3	101.88	100.77	87.61	139.42	133.53	84.31
Merged-chr14-22801545-3	chr14	22801051	22802051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-258753.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	56.63	55.75	14.8	63.42	81.64	53.05	32.74	29.63	24.36
Merged-chr15-90680173-3	chr15	90679697	90680697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-809.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	28.6	22.12	7.4	76.24	55.05	31.35	38.02	19.46	6.25
Merged-chr4-98383223-3	chr4	98382731	98383731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053157)	promoter-TSS (NM_053157)	34.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	132.14	127.18	84.17	169.35	153.01	73.95	161.6	125.58	68.7
Merged-chr6-38950043-3	chr6	38949538	38950538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	31052.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	268.87	211.04	184.99	269.89	173.07	213.0	223.91	300.67	140.52
Merged-chr15-76607649-3	chr15	76607171	76608171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	-80.0	NM_001164173	94230.0	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	17.73	22.58	16.65	27.66	14.0	17.68	34.85	18.13	25.61
Merged-chr4-34495496-3	chr4	34495006	34496006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55109.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	30.32	45.16	35.15	28.34	25.19	38.58	23.24	35.37	35.6
Merged-chr2-35495659-3	chr2	35495161	35496161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	-34212.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	227.68	233.62	127.64	222.66	206.66	198.54	157.37	156.97	114.29
Merged-chr17-21707713-3	chr17	21707224	21708224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008501)	promoter-TSS (NM_001008501)	-17.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	88.67	135.93	123.94	57.35	86.77	106.1	55.98	64.11	36.85
Merged-chr1-107497027-3	chr1	107496537	107497537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14386.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	12.01	9.68	7.4	24.29	22.39	13.66	25.35	12.38	5.0
Merged-chr15-10981832-3	chr15	10981339	10982339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008537)	promoter-TSS (NM_008537)	83.0	NM_008537	17117.0	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	56.06	68.66	78.62	89.74	88.17	127.8	116.18	62.35	59.33
Merged-chr10-82699069-3	chr10	82698572	82699572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081218)	promoter-TSS (NM_001081218)	65.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	89.24	70.04	69.37	82.32	70.91	86.01	147.87	116.29	66.82
Merged-chr18-36725675-3	chr18	36725174	36726174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009841, exon 2 of 2)	exon (NM_009841, exon 2 of 2)	1141.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	229.97	280.16	194.24	217.93	259.38	236.31	192.23	161.39	141.14
Merged-chrX-102033742-3	chrX	102033221	102034221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	37586.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	19.45	13.36	6.47	14.84	8.86	20.9	6.34	4.86	11.24
Merged-chr18-90510130-3	chr18	90509652	90510652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-2.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	119.56	175.56	121.17	112.0	149.75	122.98	140.47	183.94	113.04
Merged-chr19-37207576-3	chr19	37207064	37208064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290828)	promoter-TSS (NM_001290828)	19.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	462.79	447.42	443.05	386.61	338.69	329.55	480.56	458.09	270.42
Merged-chr13-60627142-3	chr13	60626637	60627637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	24926.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	49.2	40.55	44.4	165.31	128.29	155.93	148.92	186.15	95.55
Merged-chr11-75571401-3	chr11	75570900	75571900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 12 of 13)	intron (NM_001199284, intron 12 of 13)	-16679.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	69.79	66.35	48.1	86.36	42.45	55.46	87.66	111.43	56.83
Merged-chr8-105636828-3	chr8	105636305	105637305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358924, intron 1 of 11)	CpG	267.0	NM_001358924	13018.0	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	307.19	252.51	225.69	306.32	168.41	195.32	284.11	168.47	150.51
Merged-chr4-32800353-3	chr4	32799843	32800843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175364)	promoter-TSS (NM_175364)	84.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	54.35	64.97	68.45	80.29	69.98	100.47	87.66	46.87	39.97
Merged-chr11-54492241-3	chr11	54491736	54492736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 9 of 17)	L1MB3|LINE|L1	-30609.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	31.46	32.25	9.25	64.77	36.39	51.44	59.15	61.46	38.1
Merged-chr2-133481161-1	chr2	133480661	133481661	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70998.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	30.89	31.33	40.7	29.01	25.66	85.2	28.52	24.32	34.97
Merged-chr3-157947078-3	chr3	157946591	157947591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359909)	promoter-TSS (NM_001359909)	91.0	NM_001013806	433667.0	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	378.7	425.76	266.39	408.88	380.2	313.48	374.95	361.25	241.69
Merged-chr5-145083795-3	chr5	145083318	145084318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019767)	promoter-TSS (NM_019767)	-51.0	NM_019767	56443.0	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	64.07	58.98	52.72	64.77	48.98	52.25	76.05	78.71	39.35
Merged-chr15-31352735-1	chr15	31352235	31353235	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	MLT2C2|LTR|ERVL	15024.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.0	3.69	0.0	4.05	3.73	1.61	5.28	3.98	1.25
Merged-chr16-10498346-3	chr16	10497834	10498834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	8553.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	29.75	25.8	21.27	10.8	10.73	6.43	32.74	25.65	11.87
Merged-chr10-68085780-3	chr10	68085282	68086282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106212.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	33.75	33.64	7.4	33.74	27.06	35.37	27.46	25.65	14.36
Merged-chr9-106330383-3	chr9	106329909	106330909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	MTC|LTR|ERVL-MaLR	-38223.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	11.44	8.75	7.4	13.49	9.33	10.45	25.35	19.46	29.98
Merged-chr2-129196488-3	chr2	129195978	129196978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2295.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	117.84	71.88	76.77	101.21	61.11	99.67	89.78	85.34	65.58
Merged-chr9-54560262-3	chr9	54559753	54560753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019686)	promoter-TSS (NM_019686)	-174.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	25.17	16.59	33.3	35.76	23.79	34.56	24.29	13.27	18.11
Merged-chr12-102379189-3	chr12	102378695	102379695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	60618.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	41.19	35.48	22.2	32.39	32.19	77.97	38.02	32.28	16.24
Merged-chr10-8010107-3	chr10	8009603	8010603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53980.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	70.36	54.83	25.9	85.69	40.59	42.6	33.8	21.67	31.23
Merged-chr2-152810369-3	chr2	152809887	152810887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	18102.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	226.53	206.89	129.49	256.39	216.46	180.85	208.07	216.66	83.06
Merged-chr5-123427764-3	chr5	123427245	123428245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	32947.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	64.64	55.29	61.05	61.4	41.99	56.27	44.36	42.89	34.35
Merged-chr4-132491978-3	chr4	132491471	132492471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144907)	TTS (NM_144907)	18485.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	87.52	103.22	60.12	90.41	87.24	145.49	107.73	125.13	72.45
Merged-chr2-30392271-3	chr2	30391767	30392767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290508)	promoter-TSS (NM_001290508)	13.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	13.73	23.04	31.45	20.92	15.39	28.13	26.4	13.27	23.73
Merged-chr8-35634106-3	chr8	35633620	35634620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-45100.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	16.59	10.14	12.95	15.52	19.59	24.11	36.97	16.36	16.24
Merged-chr12-35889527-3	chr12	35889047	35890047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36074.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	38.9	46.08	16.65	26.31	36.39	28.94	20.07	20.34	13.12
Merged-chr14-67072469-3	chr14	67071997	67072997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205188)	promoter-TSS (NM_001205188)	-26.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	193.93	165.88	144.29	182.85	182.4	131.02	167.93	149.45	94.93
Merged-chr5-36563312-3	chr5	36562793	36563793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19104.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	252.28	193.99	192.39	224.68	144.62	148.7	175.33	182.62	135.52
Merged-chr3-146135601-3	chr3	146135102	146136102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134160, intron 8 of 11)	L2a|LINE|L2	13811.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	28.6	23.04	5.55	28.34	23.79	21.7	20.07	22.55	27.48
Merged-chr16-35898214-1	chr16	35897714	35898714	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-26832.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	31.46	30.87	38.85	16.87	25.66	16.08	34.85	35.37	30.6
Merged-chrX-74299930-3	chrX	74299444	74300444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358375, intron 2 of 8)	intron (NM_001358375, intron 2 of 8)	2847.0	NM_018794	54411.0	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	42.9	40.09	33.3	52.63	36.39	46.62	50.7	54.83	43.72
Merged-chr7-127260807-3	chr7	127260312	127261312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023203)	promoter-TSS (NM_023203)	-145.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	64.07	44.24	48.1	42.51	38.72	60.28	41.19	56.6	22.48
Merged-chr16-34690611-3	chr16	34690127	34691127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172824)	promoter-TSS (NM_172824)	11.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	28.6	36.4	31.45	35.76	33.12	30.54	41.19	34.93	28.1
Merged-chr2-167775420-3	chr2	167774929	167775929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84252.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	385.56	201.36	219.21	354.23	194.53	208.18	297.84	234.35	133.65
Merged-chr15-80083401-3	chr15	80082835	80083835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	71.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	168.76	182.01	127.64	153.84	129.22	133.43	207.01	185.71	112.42
Merged-chr7-27674626-3	chr7	27674203	27675203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290528)	promoter-TSS (NM_001290528)	42.0	NM_198417	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	60.64	46.08	24.05	51.95	34.52	49.03	65.48	36.7	25.61
Merged-chr15-66746602-3	chr15	66746082	66747082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 34 of 47)	intron (NM_009375, intron 34 of 47)	75812.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	60.07	69.58	57.35	101.88	75.11	82.79	51.75	67.65	50.59
Merged-chr7-28810755-3	chr7	28810263	28811263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177301)	promoter-TSS (NM_177301)	-127.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	288.32	271.4	229.39	265.16	209.93	184.07	241.87	280.33	154.88
Merged-chr13-34793262-3	chr13	34792752	34793752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53610.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	125.85	144.69	97.12	140.34	152.08	107.71	113.01	129.55	49.34
Merged-chr12-86047584-3	chr12	86047091	86048091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	31450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	75.51	78.33	43.47	145.74	121.29	94.04	119.35	98.16	60.58
Merged-chr9-20607374-3	chr9	20606918	20607918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033729)	promoter-TSS (NR_033729)	-57.0	NR_033729	66662.0	Mm.477847	NM_175110	ENSMUSG00000062470	Fbxl12os	5730577I03Rik	F-box and leucine-rich repeat protein 12, opposite strand	pseudo	161.32	273.71	126.72	151.81	200.13	209.79	193.28	221.08	148.01
Merged-chr4-101694695-3	chr4	101694187	101695187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22720.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	36.04	61.28	34.22	59.38	46.65	75.56	60.2	49.08	60.58
Merged-chr17-71310947-3	chr17	71310443	71311443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145158)	promoter-TSS (NM_145158)	68.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	196.79	156.21	134.12	202.42	197.8	221.85	107.73	74.73	78.07
Merged-chr10-44327299-3	chr10	44326792	44327792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-32384.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	86.95	73.26	38.85	96.48	71.38	73.95	79.21	58.37	39.35
Merged-chr11-95835464-3	chr11	95834968	95835968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-6827.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	70.36	59.44	88.8	104.58	75.57	116.55	136.25	124.25	61.2
Merged-chr15-5244227-3	chr15	5243736	5244736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-49.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	33.18	32.72	30.52	22.94	18.19	23.31	49.64	31.39	26.23
Merged-chr14-77850808-1	chr14	77850308	77851308	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	intron (NM_025384, intron 3 of 5)	24109.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	155.6	136.39	86.95	172.05	145.55	133.43	194.34	235.23	119.28
Merged-chr17-57113114-3	chr17	57112614	57113614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7172.0	NR_033508	100169874.0	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	-	predicted gene 11110	ncRNA	34.9	24.42	11.1	29.69	16.33	13.66	25.35	26.97	19.98
Merged-chr2-71055691-3	chr2	71055194	71056194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145524)	promoter-TSS (NM_145524)	-50.0	NM_001165982	75763.0	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	132.14	138.7	109.14	173.4	182.4	170.4	184.83	192.78	111.17
Merged-chr17-74802928-1	chr17	74802428	74803428	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	L1MB2|LINE|L1	85178.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.29	3.23	7.4	2.7	2.8	6.43	81.33	102.58	55.58
Merged-chr4-134853963-3	chr4	134853462	134854462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355501)	promoter-TSS (NM_001355501)	-617.0	NM_025382	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	374.12	337.75	227.54	294.85	334.49	216.22	273.55	336.93	141.77
Merged-chr6-8509290-3	chr6	8508786	8509786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133236)	promoter-TSS (NM_133236)	-125.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	241.41	178.78	150.77	201.07	139.95	158.35	217.57	138.4	109.92
Merged-chr11-59554858-3	chr11	59554354	59555354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 5 of 9)	intron (NR_153314, intron 5 of 9)	12168.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	93.82	81.56	44.4	183.52	105.43	90.02	129.91	98.16	63.08
Merged-chrY-1245744-3	chrY	1245237	1246237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326683)	promoter-TSS (NM_001326683)	22.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	182.49	226.71	130.42	192.97	199.67	119.76	197.51	257.34	69.32
Merged-chr3-40705229-3	chr3	40704712	40705712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175515)	TTS (NM_175515)	-3659.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	32.61	22.12	49.02	62.07	38.72	58.68	50.7	50.85	55.58
Merged-chr11-115708153-1	chr11	115707653	115708653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	CpG	444.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	497.11	287.99	332.06	443.96	217.39	282.13	385.51	288.74	228.58
Merged-chr10-57784853-3	chr10	57784345	57785345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021272)	promoter-TSS (NM_021272)	-78.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	106.97	138.7	70.3	100.53	115.23	125.39	119.35	129.11	83.69
Merged-chr2-104027772-3	chr2	104027273	104028273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020593)	promoter-TSS (NM_020593)	-26.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	136.15	112.43	78.62	131.57	181.01	102.08	149.98	151.66	49.96
Merged-chr7-35555959-3	chr7	35555444	35556444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033080)	promoter-TSS (NM_033080)	-16.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	275.73	293.06	197.94	302.95	373.21	210.59	325.31	282.1	154.26
Merged-chr5-25529771-3	chr5	25529262	25530262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027388)	promoter-TSS (NR_027388)	-256.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	297.47	306.42	266.39	258.42	255.65	255.6	301.01	252.04	159.25
Merged-chr3-100440181-3	chr3	100439679	100440679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13774.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	50.91	51.15	23.12	45.21	72.31	30.54	83.44	118.5	51.21
Merged-chr14-45651860-1	chr14	45651360	45652360	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	6193.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	9.15	10.14	24.05	6.07	6.06	19.29	50.7	41.56	34.35
Merged-chr7-98362260-3	chr7	98361745	98362745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-917.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	52.63	73.73	59.2	37.11	31.26	72.34	42.25	50.85	18.11
Merged-chr16-21318424-3	chr16	21317909	21318909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14947.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	58.92	27.19	14.8	58.03	24.26	17.68	32.74	22.11	16.86
Merged-chr5-66138819-3	chr5	66138318	66139318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12160.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	114.41	119.8	51.8	145.74	126.42	65.11	147.87	145.92	68.07
Merged-chr4-108458725-3	chr4	108458227	108459227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175472)	promoter-TSS (NM_175472)	-699.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	129.86	116.12	42.55	152.49	114.76	91.63	186.94	183.06	93.05
Merged-chr1-90603410-3	chr1	90602929	90603929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133805)	promoter-TSS (NM_133805)	4.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	112.69	148.83	110.07	134.27	156.28	117.35	144.7	120.71	81.19
Merged-chr17-30005732-3	chr17	30005214	30006214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	675.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	473.09	332.23	363.51	318.47	195.93	213.81	408.74	281.66	206.72
Merged-chr14-118136999-3	chr14	118136455	118137455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021434)	promoter-TSS (NM_021434)	-172.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	60.07	64.97	44.4	81.64	73.71	58.68	62.31	67.21	48.09
Merged-chr19-7017892-3	chr19	7017368	7018368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362399, intron 2 of 14)	intron (NM_001362399, intron 2 of 14)	1601.0	NM_153795	108101.0	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	234.54	210.12	181.29	220.63	165.14	198.54	210.18	207.38	149.89
Merged-chr14-54776332-3	chr14	54775811	54776811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	5575.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	44.62	47.46	53.65	66.8	45.25	48.23	74.99	55.71	33.1
Merged-chr19-37018637-3	chr19	37018128	37019128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	92549.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	20.02	4.15	8.32	24.29	15.86	12.86	72.88	47.75	28.73
Merged-chr17-71118183-3	chr17	71117699	71118699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 33 of 36)	intron (NM_001083934, intron 33 of 36)	-65333.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	40.04	19.35	19.42	35.76	22.86	36.17	31.69	7.07	25.61
Merged-chr4-133813528-4	chr4	133813024	133814024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-59913.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	288.32	251.59	210.89	262.47	162.34	229.88	219.69	187.48	171.75
Merged-chr11-57962720-3	chr11	57962207	57963207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46357.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	122.99	143.76	76.77	121.45	137.15	125.39	124.63	167.14	64.95
Merged-chr1-14579604-3	chr1	14579130	14580130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176336.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	40.04	59.44	24.05	39.81	42.92	40.19	36.97	42.01	27.48
Merged-chr7-35750950-4	chr7	35750385	35751385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178704, intron 2 of 18)	intron (NM_178704, intron 2 of 18)	3569.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	55.49	40.09	61.97	45.88	41.05	56.27	25.35	19.9	9.99
Merged-chr5-110110085-3	chr5	110109595	110110595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163996)	promoter-TSS (NM_001163996)	3.0	NM_001163996	675812.0	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	64.64	42.85	51.8	33.06	35.92	45.82	67.6	58.81	51.21
Merged-chr1-75521880-3	chr1	75521383	75522383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027886, intron 2 of 24)	CpG-327	354.0	NM_027886	71728.0	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	257.42	323.47	159.09	300.92	378.8	159.95	329.53	317.48	139.89
Merged-chrX-140456580-3	chrX	140456077	140457077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021463)	promoter-TSS (NM_021463)	-26.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	18.88	19.35	13.87	29.69	20.53	20.9	17.96	11.5	5.0
Merged-chr4-135353269-3	chr4	135352766	135353766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130477)	promoter-TSS (NM_001130477)	-52.0	NM_001130477	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	282.59	257.58	283.96	310.37	249.58	244.35	264.05	233.91	164.25
Merged-chr10-21608616-3	chr10	21608112	21609112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	15467.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	62.35	47.92	24.05	89.06	76.04	58.68	87.66	91.97	40.59
Merged-chr7-28702945-3	chr7	28702448	28703448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	9804.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	34.32	27.65	23.12	44.53	16.79	45.82	66.54	34.49	43.72
Merged-chr8-77452133-3	chr8	77451668	77452668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-64888.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	201.36	147.45	62.9	189.6	184.27	132.63	133.08	157.85	62.45
Merged-chr12-21373649-3	chr12	21373169	21374169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277266)	promoter-TSS (NM_001277266)	-37.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	176.19	179.71	176.67	132.92	175.87	171.21	231.3	251.15	156.13
Merged-chr17-7915066-3	chr17	7914564	7915564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10936.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	53.2	38.71	28.67	31.04	32.66	32.96	47.53	36.7	31.23
Merged-chr15-59831218-3	chr15	59830718	59831718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-36259.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	48.05	41.93	36.07	62.75	42.92	45.82	54.92	51.73	29.98
Merged-chr9-94691942-3	chr9	94691436	94692436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	22044.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	142.44	160.35	154.47	151.14	118.49	158.35	135.19	160.06	113.04
Merged-chr1-82799158-3	chr1	82798667	82799667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-30711.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	54.35	54.37	39.77	74.89	55.98	53.85	61.26	65.44	54.33
Merged-chr15-3232766-3	chr15	3232258	3233258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38009.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	18.31	37.32	11.1	30.36	22.86	34.56	19.01	13.27	26.23
Merged-chr15-12204961-3	chr15	12204452	12205452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172958)	promoter-TSS (NM_172958)	-76.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	171.62	125.79	123.02	168.68	107.3	83.59	130.97	90.2	76.82
Merged-chr19-9955056-3	chr19	9954562	9955562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25538.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	151.02	125.33	116.54	207.14	144.15	180.05	162.65	148.13	109.29
Merged-chr8-94363512-3	chr8	94363006	94364006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22923.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	22.88	21.66	12.02	26.31	11.66	19.29	20.07	15.03	11.87
Merged-chr7-47014784-3	chr7	47014299	47015299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6385.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	70.36	49.3	37.0	93.79	45.25	45.82	99.28	74.73	44.97
Merged-chr19-6980067-3	chr19	6979579	6980579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360288)	promoter-TSS (NM_001360288)	7.0	NM_001360286	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	328.36	235.0	206.26	264.49	170.28	222.65	265.1	221.53	129.9
Merged-chr13-33077312-5	chr13	33076840	33077840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6763.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	80.09	86.17	58.27	58.03	35.45	45.82	214.41	187.04	136.77
Merged-chr17-31801026-2	chr17	31800517	31801517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	54787.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.15	0.92	0.0	0.0	0.0	0.0	2.11	3.54	1.25
Merged-chr18-58531451-3	chr18	58530958	58531958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24782.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	45.19	64.97	71.22	61.4	57.85	77.16	54.92	79.15	56.83
Merged-chr6-140819612-3	chr6	140819093	140820093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	192708.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	8.01	6.91	3.7	10.8	7.46	4.82	2.11	5.75	3.12
Merged-chr5-76529276-3	chr5	76528783	76529783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027270)	promoter-TSS (NM_027270)	-24.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	53.77	54.37	58.27	64.1	62.98	87.61	55.98	57.04	59.95
Merged-chr11-101316171-3	chr11	101315669	101316669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011192)	promoter-TSS (NM_011192)	-44.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	315.2	293.98	235.86	294.85	259.85	213.0	276.72	266.18	138.02
Merged-chr7-127209004-3	chr7	127208504	127209504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144522)	promoter-TSS (NM_144522)	105.0	NM_001347655	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	65.21	48.38	48.1	37.78	33.59	23.31	48.58	53.94	43.72
Merged-chr1-86358920-4	chr1	86358433	86359433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015507)	promoter-TSS (NR_015507)	522.0	NM_010880	17975.0	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	311.77	235.0	246.96	293.5	288.3	224.26	227.08	240.54	159.25
Merged-chr6-121341905-3	chr6	121341420	121342420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	7.44	5.53	3.7	5.4	3.73	2.41	5.28	3.1	1.25
Merged-chr12-85108818-3	chr12	85108320	85109320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2013.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	73.79	88.01	58.27	65.45	64.38	81.99	70.76	69.42	36.22
Merged-chr5-140702297-3	chr5	140701814	140702814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028833)	promoter-TSS (NM_028833)	64.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	59.49	40.09	49.02	55.33	45.72	48.23	53.87	48.2	20.61
Merged-chr4-59009346-3	chr4	59008848	59009848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033165, intron 1 of 3)	intron (NM_001033165, intron 1 of 3)	6155.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	21.17	17.97	23.12	24.29	17.73	9.65	15.84	9.29	18.74
Merged-chr9-104063708-3	chr9	104063184	104064184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	-19.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	62.35	67.74	56.42	76.24	67.64	110.12	96.11	81.8	33.1
Merged-chr12-114378954-1	chr12	114378454	114379454	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	90512.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.57	0.0	0.0	0.0	0.0	0.0	79.21	77.82	41.22
Merged-chr15-75709398-3	chr15	75708886	75709886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163465, intron 4 of 14)	MIR3|SINE|MIR	5098.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	5.72	5.07	2.77	3.37	1.87	0.0	4.22	7.52	7.49
Merged-chr11-80168795-3	chr11	80168353	80169353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	MLT1O|LTR|ERVL-MaLR	14691.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	210.52	129.94	122.09	236.15	115.23	180.05	202.79	188.36	119.91
Merged-chr6-39810956-3	chr6	39810443	39811443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010930)	promoter-TSS (NM_001010930)	-7.0	NM_001010930	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	68.65	41.01	59.2	65.45	52.72	37.78	66.54	50.41	31.23
Merged-chr8-41240100-3	chr8	41239599	41240599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	CpG	340.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	217.38	183.39	173.89	229.4	212.26	165.58	337.98	270.61	173.62
Merged-chr6-113752448-3	chr6	113751929	113752929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11748.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	94.96	94.0	84.17	91.09	80.71	82.79	103.51	103.91	59.95
Merged-chr18-9492271-3	chr18	9491777	9492777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAGGA)n|Simple_repeat|Simple_repeat	-42123.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	61.78	27.19	1.85	131.57	122.23	29.74	98.23	86.66	9.99
Merged-chr10-95298031-3	chr10	95297517	95298517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	25692.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	355.25	371.39	232.16	338.71	292.03	214.61	276.72	403.26	226.7
Merged-chr8-4678469-3	chr8	4677970	4678970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	65300.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	545.17	525.29	289.51	412.93	393.27	321.52	442.54	572.61	236.07
Merged-chr11-102556323-3	chr11	102555837	102556837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159492)	promoter-TSS (NM_001159492)	-179.0	NM_001159492	237943.0	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	260.28	257.58	164.64	226.71	243.52	238.73	284.11	207.82	135.52
Merged-chr6-115668239-3	chr6	115667722	115668722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	7666.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	90.38	119.34	69.37	109.3	101.7	85.2	87.66	116.73	51.84
Merged-chr2-124649207-3	chr2	124648715	124649715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	RMER15|LTR|ERVL	-4366.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	68.07	62.21	61.05	74.89	55.98	63.5	62.31	62.35	46.22
Merged-chr17-72939677-2	chr17	72939181	72940181	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029999, exon 3 of 3)	3' UTR (NM_029999, exon 3 of 3)	21376.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	10.87	15.21	33.3	34.41	24.72	28.13	27.46	20.78	28.1
Merged-chr5-33009947-3	chr5	33009460	33010460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8856.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	64.07	53.91	50.87	55.33	42.92	49.03	46.47	48.64	50.59
Merged-chr4-150087272-3	chr4	150086805	150087805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	-198.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	69.22	47.46	78.62	109.3	83.04	139.06	160.54	123.36	36.85
Merged-chr2-120348312-3	chr2	120347810	120348810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147153, intron 2 of 25)	intron (NM_147153, intron 2 of 25)	4823.0	NR_027618	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	85.24	64.51	61.05	87.04	85.84	73.95	86.61	96.39	38.72
Merged-chr1-191312801-3	chr1	191312320	191313320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	5298.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	85.24	64.51	55.5	60.05	57.38	50.64	96.11	102.58	59.95
Merged-chr4-32250454-3	chr4	32249936	32250936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166999.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	293.46	343.74	203.49	286.75	358.74	237.92	288.34	388.66	155.51
Merged-chr5-101999246-3	chr5	101998770	101999770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70651.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	107.55	124.87	94.35	160.58	128.76	121.37	124.63	123.36	59.33
Merged-chr7-43671874-3	chr7	43671386	43672386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145582)	promoter-TSS (NM_145582)	-145.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	199.65	160.81	169.27	183.52	115.23	180.85	256.65	221.53	120.53
Merged-chr2-178023211-3	chr2	178022731	178023731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177400)	promoter-TSS (NM_001177400)	-53.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	8.01	9.68	0.0	22.27	57.38	25.72	38.02	62.35	19.98
Merged-chr3-116893104-3	chr3	116892611	116893611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009146, intron 9 of 16)	MTD|LTR|ERVL-MaLR	31431.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	12.01	17.97	8.32	13.49	7.93	20.09	31.69	15.03	13.12
Merged-chr3-116857835-3	chr3	116857328	116858328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1739.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	65.79	64.97	55.5	89.74	84.9	96.45	80.27	76.05	54.96
Merged-chr4-43383415-3	chr4	43382923	43383923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	1441.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	106.4	92.16	59.2	120.1	107.76	95.65	151.03	201.19	75.57
Merged-chr10-93477031-3	chr10	93476536	93477536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008517, intron 14 of 18)	intron (NM_008517, intron 14 of 18)	-11732.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	73.79	47.92	16.65	89.06	56.45	50.64	17.96	24.32	18.11
Merged-chr5-117976760-3	chr5	117976292	117977292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145564)	promoter-TSS (NM_145564)	22.0	NM_001346588	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	14.87	9.68	16.65	35.09	21.46	24.11	24.29	10.61	7.49
Merged-chr8-71296480-3	chr8	71295937	71296937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	23723.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	311.2	286.15	236.79	280.68	239.79	235.51	317.91	350.2	187.98
Merged-chr9-40781412-3	chr9	40780927	40781927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-19846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	204.8	204.59	85.1	159.23	129.22	85.2	119.35	154.32	130.53
Merged-chr19-45560688-3	chr19	45560194	45561194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020032)	promoter-TSS (NM_020032)	109.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	64.64	73.26	66.6	90.41	57.38	57.87	84.49	93.3	48.71
Merged-chr3-97610144-3	chr3	97609627	97610627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	63.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	62.93	56.22	66.6	80.29	60.65	66.71	79.21	58.37	39.35
Merged-chr1-13660603-3	chr1	13660114	13661114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145381)	promoter-TSS (NM_145381)	-105.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	302.62	329.92	209.04	263.14	339.15	182.46	273.55	322.78	153.63
Merged-chr8-72421591-3	chr8	72421103	72422103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289859)	promoter-TSS (NM_001289859)	-129.0	NM_001289859	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	137.29	120.26	107.29	136.29	118.49	127.8	128.85	126.9	84.94
Merged-chr5-96898364-3	chr5	96897848	96898848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22924.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	20.59	19.81	20.35	29.69	16.79	25.72	21.12	17.24	14.99
Merged-chr9-40321663-3	chr9	40321177	40322177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357622)	promoter-TSS (NM_001357622)	-354.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	277.45	238.23	150.77	247.62	199.67	134.23	153.15	187.04	73.07
Merged-chr7-38228022-3	chr7	38227530	38228530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024413)	promoter-TSS (NM_024413)	-36.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	5.72	7.83	1.85	8.77	10.73	3.22	10.56	11.5	4.37
Merged-chr9-106476215-3	chr9	106475699	106476699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145619, intron 1 of 10)	intron (NM_145619, intron 1 of 10)	750.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	57.78	85.71	72.15	95.81	73.71	95.65	78.16	88.88	53.08
Merged-chr3-116513082-3	chr3	116512583	116513583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357344)	promoter-TSS (NM_001357344)	13.0	NM_010022	13171.0	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	BCKAD-E2|D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	17.16	9.22	14.8	19.57	14.0	9.65	16.9	15.48	6.25
Merged-chr10-7847316-4	chr10	7846884	7847884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	11003.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	184.77	147.45	100.82	225.36	137.15	113.33	110.9	108.33	46.84
Merged-chr10-50592693-3	chr10	50592200	50593200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198007)	promoter-TSS (NM_198007)	31.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	551.46	621.14	362.58	565.41	529.95	337.59	520.7	580.57	276.04
Merged-chr11-65806607-3	chr11	65806113	65807113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-562.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	219.67	231.31	98.05	190.95	236.99	193.71	211.24	246.73	111.79
Merged-chr1-54810324-3	chr1	54809821	54810821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	116066.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	56.63	39.17	33.3	119.43	87.24	86.81	25.35	20.78	16.86
Merged-chr3-105053069-3	chr3	105052592	105053592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163332)	promoter-TSS (NM_001163332)	54.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	143.59	83.86	110.07	123.47	60.65	121.37	140.47	130.44	76.82
Merged-chr2-14204420-3	chr2	14203920	14204920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	intron (NM_001081310, intron 3 of 3)	-24994.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	30.32	17.97	9.25	25.64	11.2	20.9	5.28	6.63	13.12
Merged-chr2-150823203-3	chr2	150822693	150823693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153781, intron 14 of 19)	ORR1F|LTR|ERVL-MaLR	19377.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	57.21	56.68	54.57	74.89	69.04	73.14	71.82	59.69	38.72
Merged-chr5-76589004-1	chr5	76588504	76589504	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2710.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	91.53	82.48	68.45	69.5	39.19	42.6	78.16	42.45	55.58
Merged-chr11-34783856-3	chr11	34783341	34784341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033374)	promoter-TSS (NM_033374)	64.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	84.66	103.22	61.05	74.89	110.56	89.22	130.97	129.11	61.2
Merged-chr6-72362520-3	chr6	72362028	72363028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331173)	promoter-TSS (NM_001331173)	-96.0	NM_001331173	66510.0	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	125.85	141.92	68.45	125.5	140.42	108.51	105.62	156.53	88.06
Merged-chr3-90265731-3	chr3	90265232	90266232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201407)	promoter-TSS (NM_201407)	497.0	NM_001356483	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	562.33	418.85	342.23	497.94	391.4	282.13	420.36	419.62	228.58
Merged-chr7-134690409-3	chr7	134689899	134690899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	19712.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	64.07	62.21	31.45	69.5	45.72	57.87	91.89	57.92	28.1
Merged-chr2-102812967-3	chr2	102812479	102813479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177785, exon 16 of 16)	3' UTR (NM_001177785, exon 16 of 16)	-66219.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	43.48	62.21	38.85	46.56	39.19	41.8	33.8	45.1	39.97
Merged-chr11-106789239-3	chr11	106788693	106789693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	-8.0	NM_001355677	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	435.33	322.09	214.59	349.5	271.51	273.29	287.28	340.91	181.74
Merged-chr1-171380044-3	chr1	171379531	171380531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	-8929.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	80.66	63.13	61.05	46.56	33.12	38.58	26.4	25.2	25.61
Merged-chr10-43641342-3	chr10	43640828	43641828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47901.0	NR_033558	414125.0	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	9.72	9.22	9.25	12.14	6.53	8.84	13.73	7.07	13.74
Merged-chr13-43304279-3	chr13	43303786	43304786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033399)	promoter-TSS (NM_001033399)	-114.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	2.86	4.15	3.7	9.45	6.06	4.82	9.51	3.98	3.75
Merged-chr13-95848115-1	chr13	95847615	95848615	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	Lx8|LINE|L1	43807.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.44	5.99	7.4	4.72	4.67	3.22	38.02	20.78	21.23
Merged-chr19-34199670-3	chr19	34199152	34200152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6718.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	121.28	131.78	79.55	128.2	104.96	103.69	198.56	213.57	85.56
Merged-chrX-155177375-3	chrX	155176855	155177855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29506.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	76.66	85.25	34.22	86.36	61.11	72.34	83.44	76.49	46.22
Merged-chr11-113738061-3	chr11	113737539	113738539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	13121.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	17.73	14.75	22.2	15.52	3.73	11.25	5.28	6.19	1.25
Merged-chr17-39847916-3	chr17	39847386	39848386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4889.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	368.97	302.27	346.86	171.38	120.83	147.09	132.02	80.92	232.32
Merged-chr16-38089327-2	chr16	38088825	38089825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033221)	promoter-TSS (NR_033221)	-65.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	264.29	265.87	195.17	194.99	181.01	219.43	227.08	232.14	154.88
Merged-chr5-74126683-3	chr5	74126184	74127184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33154.0	NR_031758	100313943.0	Mm.46547	NR_031758	ENSMUSG00000093355	Snora26	MBI-6	small nucleolar RNA, H/ACA box 26	snoRNA	8.01	4.15	0.0	13.49	12.6	32.96	12.67	5.75	3.75
Merged-chr11-40754752-2	chr11	40754272	40755272	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009831, intron 1 of 5)	intron (NM_009831, intron 1 of 5)	514.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	50.34	40.09	37.92	50.6	50.85	38.58	59.15	48.2	38.72
Merged-chr11-85250530-2	chr11	85250000	85251000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15334.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	3.43	6.45	10.17	39.13	41.05	80.38	39.08	31.39	48.71
Merged-chr14-20674288-3	chr14	20673796	20674796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168273)	promoter-TSS (NM_001168273)	-25.0	NM_172596	218811.0	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	332.94	382.45	213.66	297.55	337.29	262.04	298.9	380.71	236.7
Merged-chr13-112398308-3	chr13	112397814	112398814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65756.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	213.95	142.84	81.4	132.92	52.72	46.62	127.8	92.86	53.71
Merged-chr8-33653465-3	chr8	33652983	33653983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010344, exon 1 of 13)	5' UTR (NM_010344, exon 1 of 13)	245.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	91.53	70.04	70.3	85.01	81.17	92.44	254.54	248.94	168.62
Merged-chr5-115538836-3	chr5	115538335	115539335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-20632.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	84.66	84.78	69.37	66.8	54.58	96.45	94.0	110.1	51.21
Merged-chr19-5567632-3	chr19	5567159	5568159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033448)	promoter-TSS (NM_001033448)	-365.0	NM_001362046	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	188.78	148.37	173.89	213.89	143.22	178.44	196.45	151.22	103.67
Merged-chr16-21794351-3	chr16	21793827	21794827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037957)	promoter-TSS (NR_037957)	-20.0	NR_037958	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	292.32	347.43	221.06	285.41	389.07	200.95	316.86	469.58	162.38
Merged-chr8-106210940-3	chr8	106210447	106211447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007567)	promoter-TSS (NM_001007567)	-14.0	NR_152744	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	123.56	123.49	104.52	117.4	122.69	169.6	140.47	132.21	74.32
Merged-chr2-26352118-3	chr2	26351620	26352620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139504)	promoter-TSS (NM_001139504)	-10.0	NM_001139504	52838.0	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	44.62	44.24	43.47	58.7	49.92	57.07	52.81	57.48	24.36
Merged-chr8-83742414-3	chr8	83741923	83742923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1112.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	380.99	328.54	188.69	297.55	279.91	164.78	299.96	356.83	169.87
Merged-chr5-121452503-3	chr5	121452011	121453011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026129)	promoter-TSS (NM_026129)	-37.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	406.16	362.64	313.56	354.23	338.69	255.6	245.04	285.2	212.96
Merged-chr1-131867259-3	chr1	131866747	131867747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-30.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	187.63	241.91	102.67	242.22	205.73	100.47	182.72	203.84	101.17
Merged-chr4-102570476-3	chr4	102569968	102570968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	408.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	353.53	357.57	233.09	306.32	292.5	246.76	307.35	370.09	142.39
Merged-chr7-97081593-3	chr7	97081065	97082065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010248)	promoter-TSS (NM_010248)	-186.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	256.28	192.15	251.59	280.68	190.34	137.45	231.3	175.54	119.28
Merged-chr6-100833558-3	chr6	100833054	100834054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182939)	promoter-TSS (NM_182939)	-84.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	99.54	68.66	74.0	114.03	79.31	60.28	102.45	54.83	58.71
Merged-chr11-48834471-3	chr11	48833967	48834967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053166, intron 1 of 6)	tRNA-Ala-GCG|tRNA|tRNA	-3004.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	53.77	55.29	30.52	45.21	54.58	34.56	41.19	65.44	51.84
Merged-chr11-113334664-3	chr11	113334146	113335146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-124977.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	14.3	12.44	1.85	38.46	27.52	37.78	3.17	3.54	5.0
Merged-chr5-136083890-3	chr5	136083407	136084407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133914)	promoter-TSS (NM_133914)	-9.0	NM_133914	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	132.14	147.91	124.87	126.17	113.83	120.57	137.3	166.7	78.69
Merged-chr12-100187595-3	chr12	100187102	100188102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045282)	promoter-TSS (NR_045282)	-366.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	353.53	367.24	226.61	331.29	353.15	270.07	324.25	425.36	187.98
Merged-chr8-122576890-3	chr8	122576377	122577377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009698)	promoter-TSS (NM_009698)	30.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	72.08	45.62	46.25	53.98	48.98	57.87	46.47	45.54	43.09
Merged-chr15-79408939-3	chr15	79408451	79409451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5648.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	169.9	103.68	100.82	141.02	85.84	106.9	113.01	95.95	54.33
Merged-chr10-40477088-3	chr10	40476584	40477584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 10 of 11)	intron (NM_198164, intron 10 of 11)	-93278.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	20.59	22.12	26.82	29.69	29.39	30.54	23.24	26.53	18.11
Merged-chr17-27133907-3	chr17	27133416	27134416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026063)	promoter-TSS (NM_026063)	-25.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	37.18	32.25	39.77	29.01	30.79	31.35	44.36	32.72	29.35
Merged-chr18-62073880-3	chr18	62073370	62074370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	106111.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	105.26	79.72	50.87	99.18	48.05	69.93	64.43	57.48	54.33
Merged-chr1-88587565-3	chr1	88587061	88588061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36044.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	208.8	206.43	133.19	229.4	190.34	168.8	247.15	243.63	93.68
Merged-chr1-84426815-3	chr1	84426298	84427298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-142153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	19.45	27.19	16.65	14.17	13.06	23.31	22.18	7.52	19.36
Merged-chr11-65807176-3	chr11	65806673	65807673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026107)	promoter-TSS (NM_026107)	-2.0	NM_001302374	52712.0	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	339.8	380.15	212.74	334.66	388.6	248.37	343.26	397.95	176.74
Merged-chr12-16894078-3	chr12	16893587	16894587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009072)	promoter-TSS (NM_009072)	-891.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	442.77	421.62	326.51	432.49	401.66	325.53	343.26	413.43	236.7
Merged-chr11-95824316-3	chr11	95823766	95824766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-234.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	113.27	57.14	63.82	78.27	51.32	65.91	61.26	53.94	35.6
Merged-chr14-54768522-3	chr14	54768030	54769030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	13356.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	114.41	89.85	53.65	107.95	94.23	86.81	89.78	82.69	67.45
Merged-chr12-108765064-3	chr12	108764575	108765575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28236.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	169.33	175.56	174.82	170.7	169.81	180.05	175.33	200.74	158.63
Merged-chr8-4259264-3	chr8	4258725	4259725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183315)	promoter-TSS (NM_183315)	49.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	5.15	3.23	8.32	4.72	3.27	4.82	5.28	3.1	5.0
Merged-chr14-73410288-3	chr14	73409779	73410779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24990.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	50.34	60.82	30.52	56.68	39.19	68.32	58.09	49.52	38.72
Merged-chr16-39431743-3	chr16	39431254	39432254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-242804.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	14.3	23.5	12.02	22.27	32.66	34.56	34.85	23.88	19.98
Merged-chr15-4027423-3	chr15	4026918	4027918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-12.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	212.8	238.23	213.66	228.05	222.06	223.45	203.84	225.06	155.51
Merged-chr3-136725555-4	chr3	136725019	136726019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	55453.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	64.07	89.85	55.5	78.27	87.7	58.68	78.16	94.62	64.33
Merged-chr7-101550850-3	chr7	101550356	101551356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4946.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	270.01	263.57	269.16	257.07	184.74	250.78	350.65	475.77	182.99
Merged-chr17-15527298-3	chr17	15526794	15527794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008799)	promoter-TSS (NM_008799)	7.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	37.18	44.7	43.47	45.21	50.38	60.28	50.7	39.8	37.47
Merged-chr6-29278701-3	chr6	29278208	29279208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2433.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	16.02	14.75	16.65	14.17	14.0	17.68	13.73	11.05	13.74
Merged-chr14-102835446-5	chr14	102834942	102835942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147190.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	152.17	169.57	117.47	108.63	93.77	112.53	145.75	146.36	93.68
Merged-chr15-89315350-3	chr15	89314855	89315855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170561)	promoter-TSS (NM_001170561)	-44.0	NM_001170561	77980.0	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	65.21	31.33	54.57	66.12	31.26	57.07	61.26	35.37	26.23
Merged-chr9-35210425-3	chr9	35209943	35210943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026130)	promoter-TSS (NM_026130)	612.0	NM_172291	235169.0	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	326.07	431.29	246.04	320.49	340.55	314.28	288.34	394.41	224.21
Merged-chr3-88043087-3	chr3	88042594	88043594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110809)	promoter-TSS (NM_001110809)	-12.0	NM_025663	66614.0	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	12.59	12.44	13.87	24.96	16.79	34.56	26.4	13.27	18.74
Merged-chr16-90283734-3	chr16	90283238	90284238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	CpG	748.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	400.44	447.88	377.38	410.23	395.13	290.97	298.9	352.41	246.06
Merged-chr1-165672695-3	chr1	165672174	165673174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	MLTR11B|LTR|ERVK	35420.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	71.51	39.17	27.75	62.75	23.79	48.23	61.26	57.04	38.1
Merged-chrX-42149100-3	chrX	42148599	42149599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077712)	promoter-TSS (NM_001077712)	-313.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	97.82	134.09	66.6	99.86	95.17	66.71	103.51	145.92	78.69
Merged-chr15-100728752-3	chr15	100728263	100729263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172451, intron 1 of 11)	intron (NM_172451, intron 1 of 11)	613.0	NM_001161767	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	275.16	217.03	110.07	239.52	184.27	147.9	153.15	163.6	67.45
Merged-chr18-53176264-3	chr18	53175785	53176785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026386)	promoter-TSS (NM_026386)	-7.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	287.17	238.23	182.22	264.49	282.24	204.97	262.99	253.36	158.01
Merged-chr3-130709316-3	chr3	130708804	130709804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025509, exon 1 of 4)	exon (NM_025509, exon 1 of 4)	140.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	251.7	253.89	120.24	234.8	223.46	160.76	269.33	253.36	115.54
Merged-chr5-121593603-3	chr5	121593087	121594087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001308450, exon 1 of 11)	5' UTR (NM_001308450, exon 1 of 11)	237.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	128.71	109.67	115.62	147.76	147.42	118.96	162.65	159.62	86.18
Merged-chr14-78699247-1	chr14	78698747	78699747	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	33482.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	6.86	2.3	5.55	4.72	4.2	6.43	3.17	1.33	0.0
Merged-chr10-96466166-3	chr10	96465678	96466678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-150823.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	116.7	115.2	90.65	124.15	126.42	110.92	89.78	100.81	73.69
Merged-chr6-148214943-3	chr6	148214460	148215460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015615, intron 1 of 1)	intron (NR_015615, intron 1 of 1)	-2586.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	18.31	13.36	7.4	16.87	3.73	9.65	20.07	6.63	9.99
Merged-chr19-6241576-3	chr19	6241074	6242074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194348)	promoter-TSS (NM_194348)	-94.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	294.61	276.47	159.09	290.8	256.11	190.5	261.93	278.57	149.89
Merged-chr1-77868094-3	chr1	77867613	77868613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	329023.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.57	3.69	8.32	7.42	2.8	6.43	2.11	3.54	5.62
Merged-chr4-43508809-3	chr4	43508324	43509324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-77.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	66.36	50.69	35.15	74.89	54.58	60.28	52.81	62.35	52.46
Merged-chr10-80148921-3	chr10	80148431	80149431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305799)	promoter-TSS (NM_001305799)	659.0	NM_001347117	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	409.59	331.3	271.94	427.1	320.96	272.48	305.24	398.83	176.74
Merged-chr2-126876268-3	chr2	126875756	126876756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021450)	promoter-TSS (NM_021450)	5.0	NM_001164325	58800.0	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	334.65	306.42	279.34	314.42	370.87	218.63	275.66	332.07	231.7
Merged-chr7-140999051-2	chr7	140998566	140999566	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11678.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	153.88	185.7	118.39	126.85	121.29	126.19	139.42	165.37	113.66
Merged-chr16-21640968-4	chr16	21640458	21641458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 46 of 46)	intron (NM_001081366, intron 46 of 46)	53707.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	124.14	110.13	116.54	182.17	118.49	162.37	217.57	202.51	92.43
Merged-chr9-25251992-4	chr9	25251484	25252484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205367)	promoter-TSS (NM_001205367)	-7.0	NM_001359736	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	296.9	377.84	267.31	309.7	372.74	244.35	354.88	363.46	190.48
Merged-chr6-37615282-3	chr6	37614795	37615795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85122.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	27.46	45.16	24.97	20.24	22.86	19.29	21.12	25.2	18.74
Merged-chr12-85381817-3	chr12	85381315	85382315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-7098.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	123.56	97.69	98.05	152.49	99.83	105.3	89.78	77.38	84.31
Merged-chr10-123197034-3	chr10	123196558	123197558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027604)	promoter-TSS (NM_027604)	-39.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	139.58	121.19	147.99	122.12	104.5	156.74	149.98	113.19	79.94
Merged-chr2-80025197-3	chr2	80024697	80025697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	13705.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	135.58	125.33	66.6	109.3	104.03	127.0	128.85	126.9	88.68
Merged-chr14-21052530-3	chr14	21052016	21053016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134079)	promoter-TSS (NM_134079)	-58.0	NM_134079	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	193.93	156.21	101.74	206.46	148.35	106.9	181.66	131.32	99.92
Merged-chr17-15704715-3	chr17	15704231	15705231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-236.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	477.09	362.18	238.64	402.13	289.7	237.92	326.36	278.12	156.13
Merged-chr5-8357436-3	chr5	8356939	8357939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	10721.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	137.29	149.75	63.82	107.28	85.84	57.87	59.15	64.11	55.58
Merged-chr19-34521593-3	chr19	34521084	34522084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5890.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	233.97	281.08	183.14	238.85	218.79	242.74	270.38	333.84	164.88
Merged-chr6-83005055-3	chr6	83004554	83005554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	28417.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	173.33	128.1	82.32	172.73	118.03	122.98	161.6	190.13	76.19
Merged-chr8-91344861-3	chr8	91344369	91345369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	31344.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	23.45	16.13	9.25	8.1	9.33	6.43	19.01	25.65	14.99
Merged-chr9-21014822-3	chr9	21014336	21015336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1104.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	93.24	52.53	37.92	75.57	29.86	79.58	70.76	54.83	48.71
Merged-chr10-117876677-3	chr10	117876163	117877163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30689.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	223.67	221.64	127.64	226.71	228.59	159.15	224.97	259.11	114.91
Merged-chr10-81000021-3	chr10	80999529	81000529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	1336.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	19.45	12.44	3.7	24.96	15.39	4.82	12.67	19.01	0.0
Merged-chr17-34143196-3	chr17	34142700	34143700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	87.52	46.54	69.37	58.7	26.12	70.73	104.56	108.77	94.3
Merged-chr17-71002240-1	chr17	71001740	71002740	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026064, exon 1 of 4)	5' UTR (NM_026064, exon 1 of 4)	293.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	359.25	267.72	283.96	295.53	250.98	297.4	339.04	263.09	178.61
Merged-chr1-182125196-3	chr1	182124695	182125695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012058, intron 1 of 2)	CpG	458.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	163.61	152.98	108.22	221.31	185.2	189.69	177.44	176.87	109.29
Merged-chr10-20347760-3	chr10	20347268	20348268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027930)	promoter-TSS (NM_027930)	-51.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	28.03	34.56	21.27	36.43	27.06	22.51	52.81	53.5	26.85
Merged-chr10-67204739-1	chr10	67204239	67205239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	18989.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	103.54	103.22	58.27	91.76	90.5	94.85	105.62	118.06	84.31
Merged-chr4-57947765-1	chr4	57947265	57948265	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8646.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	125.85	116.12	52.72	183.52	160.95	105.3	124.63	131.77	56.83
Merged-chr12-69724944-3	chr12	69724438	69725438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145443)	promoter-TSS (NM_145443)	-7.0	NM_001361691	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	86.38	84.78	55.5	101.21	107.3	69.13	98.23	89.32	40.59
Merged-chr5-65493392-3	chr5	65492882	65493882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-547.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	209.94	122.11	106.37	221.98	149.28	139.86	158.43	150.78	94.93
Merged-chr4-41275048-1	chr4	41274548	41275548	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026872)	promoter-TSS (NM_026872)	87.0	NM_026872	68926.0	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	177.91	182.47	141.52	174.08	178.67	147.09	223.91	195.0	79.94
Merged-chr2-181581189-3	chr2	181580701	181581701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164597)	TTS (NM_001164597)	772.0	NM_026765	68556.0	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	224.82	267.72	178.52	204.44	211.79	203.36	233.42	268.4	126.15
Merged-chr1-58586272-3	chr1	58585784	58586784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025597)	promoter-TSS (NM_025597)	49.0	NM_001310598	213056.0	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	54.92	59.44	69.37	80.29	69.04	81.18	111.96	81.8	40.59
Merged-chr8-25785276-3	chr8	25784749	25785749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026121)	promoter-TSS (NM_026121)	-40.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	107.55	91.7	80.47	87.04	70.91	114.14	104.56	92.86	65.58
Merged-chr6-147042791-3	chr6	147042300	147043300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145573)	promoter-TSS (NM_145573)	30.0	NM_145573	232536.0	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	36.04	40.09	36.07	56.68	44.78	45.01	29.57	30.51	12.49
Merged-chr4-132422160-2	chr4	132421677	132422677	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 1 of 12)	CpG	269.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	92.1	87.09	104.52	84.34	107.3	99.67	113.01	106.12	65.58
Merged-chr9-85327857-3	chr9	85327348	85328348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-698.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	417.03	449.26	272.86	360.3	379.74	254.0	388.68	482.85	229.2
Merged-chr19-6921347-3	chr19	6920828	6921828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	480.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	147.02	73.73	85.1	147.09	72.78	94.85	176.38	109.22	67.45
Merged-chr5-86068499-3	chr5	86068027	86069027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	34.9	43.31	36.07	31.71	32.66	38.58	48.58	43.33	23.73
Merged-chr17-70709376-2	chr17	70708859	70709859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	137418.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	6.29	3.69	5.55	6.07	1.87	4.82	2.11	0.0	5.0
Merged-chr2-90528313-3	chr2	90527807	90528807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-49133.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	80.09	53.91	45.32	82.32	47.12	63.5	113.01	88.43	44.97
Merged-chr4-129514510-3	chr4	129514000	129515000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010807, intron 1 of 1)	CpG	919.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	76.08	66.81	75.85	84.34	33.12	70.73	45.42	38.47	58.08
Merged-chr16-76226685-3	chr16	76226185	76227185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104072.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	68.65	99.53	85.1	104.58	83.51	65.11	141.53	185.27	56.21
Merged-chr12-87407652-3	chr12	87407146	87408146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19291.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	120.13	109.21	111.92	136.97	98.9	143.88	180.61	183.94	103.05
Merged-chr3-94886951-3	chr3	94886478	94887478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008945)	promoter-TSS (NM_008945)	-20.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	94.96	122.57	120.24	112.0	132.95	114.14	137.3	141.94	81.19
Merged-chr5-34336299-3	chr5	34335799	34336799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	49.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	371.26	393.05	349.63	360.3	374.14	345.63	340.09	402.37	247.94
Merged-chr19-10694086-3	chr19	10693588	10694588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	5353.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	280.88	307.34	179.44	178.8	154.41	120.57	164.76	173.33	120.53
Merged-chr14-30626392-4	chr14	30625875	30626875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-167.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	227.68	234.54	241.41	265.84	138.55	224.26	255.6	217.99	149.26
Merged-chr4-34886740-3	chr4	34886274	34887274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3826.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	85.81	53.45	56.42	69.5	72.31	88.42	65.48	60.58	36.85
Merged-chr15-6601484-3	chr15	6600962	6601962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	21615.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	136.15	169.11	97.12	153.16	125.49	97.26	124.63	119.39	86.18
Merged-chr14-45685453-3	chr14	45684948	45685948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27305.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	78.94	73.26	38.85	66.8	40.59	48.23	99.28	113.64	49.96
Merged-chr5-130255540-3	chr5	130255039	130256039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	-9.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	207.66	225.78	156.32	163.96	165.61	130.21	182.72	211.36	116.79
Merged-chr10-128232186-3	chr10	128231699	128232699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008600)	TTS (NM_008600)	136.0	NM_001136082	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	43.48	36.86	32.37	36.43	27.99	53.05	67.6	61.46	66.82
Merged-chr10-36916982-3	chr10	36916468	36917468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57576.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	28.03	35.48	20.35	40.48	38.25	64.3	33.8	23.43	24.98
Merged-chr9-55511813-3	chr9	55511331	55512331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145615, intron 1 of 11)	CpG	412.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	251.13	244.68	183.14	321.17	362.01	199.34	296.79	248.5	98.05
Merged-chr16-92419208-3	chr16	92418698	92419698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-19120.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	72.08	47.46	42.55	146.41	160.48	157.54	23.24	42.45	23.11
Merged-chr6-122921639-3	chr6	122921125	122922125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199311)	promoter-TSS (NM_199311)	-223.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	89.81	129.02	91.57	87.71	72.78	93.24	91.89	103.91	80.56
Merged-chrX-48454289-3	chrX	48453840	48454840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	CpG	8792.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	113.84	76.49	99.89	113.35	61.58	93.24	80.27	66.77	70.57
Merged-chr14-76687210-1	chr14	76686710	76687710	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015485)	TTS (NR_015485)	9642.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	3.43	4.15	0.0	2.02	3.27	1.61	5.28	6.63	0.62
Merged-chr3-132684034-3	chr3	132683512	132684512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163455)	promoter-TSS (NM_001163455)	-132.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	267.15	248.82	143.37	250.32	175.87	128.61	287.28	199.86	99.92
Merged-chr14-14346250-3	chr14	14345752	14346752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008369)	promoter-TSS (NM_008369)	-243.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	399.29	284.3	197.02	272.59	143.68	139.06	295.73	228.6	114.29
Merged-chr7-97094439-3	chr7	97093938	97094938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	MLT1G|LTR|ERVL-MaLR	12687.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	19.45	17.05	18.5	20.92	17.73	13.66	23.24	9.73	6.25
Merged-chr6-13691864-3	chr6	13691375	13692375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13909.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	31.46	50.23	26.82	41.16	38.25	35.37	31.69	24.32	27.48
Merged-chr16-10992699-1	chr16	10992199	10993199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	CpG	422.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	485.67	367.71	286.74	468.25	382.07	384.21	374.95	478.87	201.72
Merged-chr7-27536807-3	chr7	27536295	27537295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 10 of 13)	intron (NM_001317355, intron 10 of 13)	13534.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	179.05	157.13	105.44	159.23	126.42	122.18	216.52	189.25	88.68
Merged-chrX-169987029-1	chrX	169986529	169987529	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 8 of 9)	CpG	-8112.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	9.15	13.36	0.0	15.52	10.26	0.0	50.7	66.77	31.85
Merged-chr1-38012309-3	chr1	38011794	38012794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	14284.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	77.23	83.4	86.95	103.91	65.31	91.63	126.74	89.76	51.84
Merged-chr8-40031566-3	chr8	40031076	40032076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	255377.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	13.16	23.04	3.7	20.24	11.66	23.31	6.34	7.52	7.49
Merged-chr3-48101077-3	chr3	48100599	48101599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-74340.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	4.0	4.15	10.17	4.72	4.67	4.82	4.22	5.31	11.24
Merged-chrX-167328742-3	chrX	167328240	167329240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	1831.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	99.54	109.67	45.32	112.0	112.9	86.81	147.87	158.3	78.69
Merged-chr5-63827217-3	chr5	63826738	63827738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	14743.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	151.02	151.14	137.82	167.33	113.83	134.23	218.63	179.96	142.39
Merged-chr17-34587499-3	chr17	34586981	34587981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010929, exon 30 of 30)	exon (NM_010929, exon 30 of 30)	-2325.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	250.56	215.19	132.27	202.42	160.95	123.78	159.48	191.02	123.66
Merged-chr14-40958792-3	chr14	40958295	40959295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	8101.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	36.04	33.64	42.55	36.43	29.39	39.39	47.53	26.97	22.48
Merged-chr14-55660367-3	chr14	55659864	55660864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028316, exon 1 of 5)	non-coding (NR_028316, exon 1 of 5)	144.0	NM_023397	67881.0	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	81.8	50.23	55.5	59.38	56.91	52.25	42.25	38.91	26.85
Merged-chr5-121836436-3	chr5	121835938	121836938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306126)	promoter-TSS (NM_001306126)	-334.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	370.69	232.24	225.69	340.06	218.79	250.78	287.28	238.77	131.15
Merged-chr19-21653084-3	chr19	21652588	21653588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025423)	promoter-TSS (NM_025423)	-221.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	131.0	83.4	88.8	115.38	73.24	104.49	120.41	81.36	68.07
Merged-chr18-36715966-3	chr18	36715461	36716461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10854.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	74.37	72.34	59.2	93.79	56.45	55.46	43.3	26.09	24.98
Merged-chr9-75410138-3	chr9	75409638	75410638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027418)	promoter-TSS (NM_027418)	-46.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	388.42	373.24	243.26	400.78	356.41	287.76	393.96	400.6	174.87
Merged-chr17-50510044-1	chr17	50509544	50510544	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	497.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	193.35	204.59	194.24	155.19	167.48	205.77	272.5	214.89	136.77
Merged-chr6-31209601-3	chr6	31209105	31210105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	8869.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	242.55	212.88	125.79	300.25	232.79	200.95	260.88	363.46	118.04
Merged-chr11-50916190-3	chr11	50915696	50916696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178447)	promoter-TSS (NM_178447)	-20.0	NM_001294323	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	23.45	21.2	17.57	40.48	46.65	29.74	30.63	12.82	17.49
Merged-chr5-139252228-3	chr5	139251712	139252712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026269)	promoter-TSS (NM_026269)	-112.0	NM_001359238	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	124.71	89.39	84.17	114.03	50.85	51.44	115.12	68.09	55.58
Merged-chr10-67025742-3	chr10	67025251	67026251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110511, intron 2 of 6)	MTD|LTR|ERVL-MaLR	20676.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	191.07	161.27	77.7	176.1	119.43	126.19	143.64	194.11	89.93
Merged-chr8-116634009-3	chr8	116633507	116634507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	MTD|LTR|ERVL-MaLR	98984.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	32.04	33.64	46.25	22.94	18.19	11.25	61.26	57.92	43.09
Merged-chr2-153299150-3	chr2	153298670	153299670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	MIRb|SINE|MIR	7754.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	76.66	78.33	63.82	72.87	35.92	55.46	72.88	68.54	63.7
Merged-chr13-8866881-3	chr13	8866378	8867378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	4166.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	66.93	64.51	62.9	48.58	48.52	33.76	83.44	86.22	63.08
Merged-chr4-40239835-3	chr4	40239335	40240335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172689)	promoter-TSS (NM_172689)	-10.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	112.12	106.9	71.22	89.06	74.64	100.47	114.07	116.73	49.96
Merged-chr4-126262214-3	chr4	126261709	126262709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013718)	promoter-TSS (NM_013718)	-196.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	329.5	244.22	154.47	323.19	286.44	166.38	258.77	294.48	131.15
Merged-chr12-3235392-3	chr12	3234899	3235899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015551)	promoter-TSS (NR_015551)	-392.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	283.17	220.25	147.99	247.62	202.93	155.93	232.36	256.01	91.81
Merged-chr5-149053084-3	chr5	149052568	149053568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010439)	promoter-TSS (NM_010439)	-11.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	190.49	117.96	148.92	126.17	78.37	101.28	136.25	69.86	113.66
Merged-chr8-70653464-3	chr8	70652977	70653977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	6261.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	48.62	34.1	9.25	22.27	18.66	11.25	22.18	12.82	11.24
Merged-chr2-144165520-3	chr2	144165051	144166051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23739.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	106.4	83.4	47.17	91.76	62.05	65.11	76.05	76.49	44.34
Merged-chr10-17660946-3	chr10	17660449	17661449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62279.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	22.88	20.27	22.2	23.62	18.66	9.65	17.96	20.34	13.74
Merged-chr10-30842805-3	chr10	30842244	30843244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013904)	promoter-TSS (NM_013904)	39.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	13.16	4.61	5.55	12.14	7.46	6.43	3.17	3.98	5.0
Merged-chr7-28386656-3	chr7	28386156	28387156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026042, exon 4 of 4)	3' UTR (NM_026042, exon 4 of 4)	6034.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	265.43	193.53	166.49	266.51	160.95	177.64	210.18	227.27	114.91
Merged-chr17-35165465-1	chr17	35164965	35165965	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-588.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	437.62	352.96	196.09	332.64	266.38	196.93	246.09	334.28	158.63
Merged-chr8-109750867-3	chr8	109750374	109751374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13135.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	33.75	17.97	6.47	25.64	20.53	26.53	20.07	15.92	22.48
Merged-chr4-75315619-3	chr4	75315129	75316129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37337.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	52.06	68.66	33.3	44.53	22.39	81.99	48.58	72.52	43.09
Merged-chr9-80067005-3	chr9	80066514	80067514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146003, exon 1 of 23)	5' UTR (NM_146003, exon 1 of 23)	111.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	137.29	132.25	138.74	166.66	107.3	106.9	157.37	77.38	85.56
Merged-chr5-36830664-3	chr5	36830158	36831158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	-9.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	88.1	84.32	99.89	78.94	126.42	100.47	96.11	92.41	54.96
Merged-chr14-105258776-3	chr14	105258269	105259269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190989)	promoter-TSS (NM_001190989)	96.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	139.58	93.54	108.22	136.29	112.9	61.89	114.07	97.72	69.32
Merged-chr3-94933035-3	chr3	94932564	94933564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009150)	promoter-TSS (NM_009150)	-19.0	NM_009150	20341.0	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|MTO|SBP56	selenium binding protein 1	protein-coding	32.04	30.87	33.3	18.89	28.92	11.25	29.57	24.32	21.86
Merged-chr7-19094965-1	chr7	19094465	19095465	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011383, exon 1 of 3)	exon (NM_011383, exon 1 of 3)	421.0	NM_011383	20475.0	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	54.35	28.57	37.0	35.76	13.06	18.49	63.37	26.97	31.23
Merged-chr4-149426728-3	chr4	149426222	149427222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022022)	promoter-TSS (NM_022022)	-91.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	76.08	88.93	91.57	81.64	105.9	112.53	121.46	109.22	58.08
Merged-chr14-57887329-3	chr14	57886827	57887827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029492, intron 1 of 12)	intron (NM_029492, intron 1 of 12)	3009.0	NM_029492	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	49.77	50.69	41.62	42.51	41.52	58.68	59.15	46.43	38.72
Merged-chr17-30612697-3	chr17	30612195	30613195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025374)	promoter-TSS (NM_025374)	-36.0	NM_001113560	109801.0	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	213.38	236.38	172.04	61.4	62.51	56.27	73.93	51.29	44.97
Merged-chr4-32249933-3	chr4	32249446	32250446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167489.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	230.54	197.68	141.52	248.3	191.27	162.37	230.25	231.25	125.53
Merged-chr10-82914328-1	chr10	82913828	82914828	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47702.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	6.86	4.15	4.62	7.42	4.67	4.82	4.22	1.33	3.75
Merged-chr18-26864262-3	chr18	26863775	26864775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1110118.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	35.47	55.29	50.87	41.83	43.85	36.17	95.06	99.05	30.6
Merged-chr4-155564056-1	chr4	155563556	155564556	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	CpG	241.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	302.04	244.22	196.09	294.85	261.24	154.33	243.98	237.89	142.39
Merged-chr8-45975328-3	chr8	45974837	45975837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138668)	promoter-TSS (NM_138668)	-85.0	NM_001033148	69479.0	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	233.4	334.53	143.37	197.69	253.78	171.21	235.53	302.0	134.9
Merged-chr11-3150166-2	chr11	3149638	3150638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	26117.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	29.17	30.87	49.95	32.39	37.32	78.77	4.22	1.33	94.3
Merged-chr6-137410681-3	chr6	137410184	137411184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164403)	promoter-TSS (NM_001164403)	-37.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	131.0	105.06	37.92	164.63	88.17	85.2	133.08	96.83	96.8
Merged-chr4-128840571-3	chr4	128840036	128841036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34424.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	117.27	98.61	60.12	107.95	89.1	102.08	94.0	72.07	50.59
Merged-chr14-76010913-3	chr14	76010425	76011425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026816)	promoter-TSS (NM_026816)	-60.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	89.81	95.84	57.35	61.4	79.77	61.89	100.34	86.22	58.71
Merged-chr5-102033481-3	chr5	102032993	102033993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36428.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	131.57	150.22	116.54	167.33	106.36	184.87	172.16	220.2	119.28
Merged-chr13-40968785-3	chr13	40968294	40969294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	LTR41|LTR|ERVL	-32216.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	105.83	86.63	24.97	108.63	83.04	83.59	71.82	64.56	28.1
Merged-chr6-88898755-3	chr6	88898249	88899249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008564)	promoter-TSS (NM_008564)	31.0	NM_008564	17216.0	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	58.92	58.06	41.62	87.71	104.03	82.79	119.35	130.0	56.21
Merged-chr13-5803810-3	chr13	5803297	5804297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54295.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	517.71	548.33	197.94	538.42	589.2	307.85	402.41	569.51	205.47
Merged-chr8-110619886-3	chr8	110619397	110620397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	MER3|DNA|hAT-Charlie	1330.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	69.79	90.31	38.85	78.27	88.17	83.59	119.35	126.02	28.73
Merged-chr16-62786791-3	chr16	62786294	62787294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178925)	promoter-TSS (NM_178925)	-78.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	151.02	158.05	122.09	141.02	132.49	140.66	172.16	185.27	103.67
Merged-chr13-41433377-1	chr13	41432877	41433877	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53983.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.01	8.75	13.87	18.22	14.46	18.49	12.67	11.05	5.62
Merged-chr16-64873988-3	chr16	64873479	64874479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21978.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	100.11	139.62	86.02	97.16	131.56	102.88	143.64	175.98	74.94
Merged-chr11-26593663-3	chr11	26593193	26594193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252447, exon 1 of 12)	5' UTR (NM_001252447, exon 1 of 12)	227.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	157.31	151.14	117.47	134.27	137.62	147.9	165.82	154.32	108.67
Merged-chr10-66931730-3	chr10	66931225	66932225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11341.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	116.13	85.71	47.17	153.84	64.84	49.83	108.79	110.1	45.59
Merged-chr6-33824222-3	chr6	33823735	33824735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-205213.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	249.99	240.53	129.49	285.41	275.24	180.85	234.47	277.68	120.53
Merged-chr8-72443825-3	chr8	72443354	72444354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028500)	promoter-TSS (NM_028500)	-26.0	NM_028170	72254.0	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	30.89	23.04	22.2	37.78	39.19	24.11	50.7	37.58	24.98
Merged-chr16-36985828-3	chr16	36985317	36986317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	4650.0	NM_001358217	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	94.39	96.76	94.35	99.86	85.84	79.58	95.06	112.75	59.95
Merged-chr13-81025496-3	chr13	81024952	81025952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	61378.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	49.2	82.94	55.5	72.87	77.91	73.14	94.0	130.0	56.83
Merged-chr17-78882592-3	chr17	78882087	78883087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011163)	promoter-TSS (NM_011163)	-15.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	44.05	30.41	50.87	62.07	43.85	61.89	61.26	99.05	23.73
Merged-chr7-126746952-3	chr7	126746464	126747464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12662.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	143.01	188.92	126.72	253.69	195.47	218.63	216.52	257.78	197.35
Merged-chr4-137862208-3	chr4	137861707	137862707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199307)	promoter-TSS (NM_199307)	-30.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	66.93	59.44	41.62	70.85	66.24	106.9	51.75	29.18	32.48
Merged-chr9-57646827-3	chr9	57646333	57647333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	MIR|SINE|MIR	-1180.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	129.28	156.21	129.49	132.24	100.77	124.59	152.09	153.87	116.79
Merged-chr5-59996844-3	chr5	59996331	59997331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10829.0	NR_040682	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	3.43	3.23	3.7	4.05	7.46	6.43	5.28	3.1	2.5
Merged-chr4-155223257-3	chr4	155222751	155223751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011385)	promoter-TSS (NM_011385)	-716.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	156.74	141.46	109.14	139.67	111.03	104.49	153.15	115.85	63.7
Merged-chr5-123079876-3	chr5	123079381	123080381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	3606.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	140.15	101.83	61.97	97.83	101.23	74.75	59.15	86.22	49.96
Merged-chr4-123917370-3	chr4	123916879	123917879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017475)	promoter-TSS (NM_017475)	-54.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	397.58	353.42	266.39	373.79	376.94	277.31	352.77	330.3	173.62
Merged-chr8-71922802-3	chr8	71922316	71923316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	-9.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	237.4	279.24	233.09	236.15	257.98	269.27	257.71	220.64	156.13
Merged-chr16-76355452-3	chr16	76354941	76355941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	ID4_|SINE|ID	17608.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	61.78	74.19	25.9	56.68	28.92	12.86	68.65	62.79	19.36
Merged-chr2-128747689-3	chr2	128747207	128748207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	48792.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	152.74	145.61	73.07	183.52	115.23	129.41	117.24	172.89	82.44
Merged-chr12-16589780-3	chr12	16589293	16590293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172950)	promoter-TSS (NM_172950)	-23.0	NM_172950	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	105.26	114.27	85.1	108.63	138.09	95.65	52.81	34.05	18.11
Merged-chr9-120571068-3	chr9	120570586	120571586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025974)	promoter-TSS (NM_025974)	-431.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	177.34	177.86	181.29	161.93	153.01	177.64	215.46	219.31	121.16
Merged-chrX-73459106-3	chrX	73458611	73459611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207104)	promoter-TSS (NM_207104)	-82.0	NM_207104	73738.0	Mm.264899	NM_028633	ENSMUSG00000031371	Haus7	1110020L19Rik|Uchl5ip|Uip1	HAUS augmin-like complex, subunit 7	protein-coding	8.58	11.52	12.02	14.17	9.8	12.86	19.01	14.15	5.62
Merged-chr1-59119901-3	chr1	59119344	59120344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037812)	promoter-TSS (NM_001037812)	-38.0	NM_001037812	381259.0	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	33.75	39.17	39.77	35.76	35.92	36.17	49.64	26.53	21.23
Merged-chr16-55698736-3	chr16	55698207	55699207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123431.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	101.25	111.51	58.27	82.32	76.51	74.75	82.38	95.07	61.83
Merged-chr19-5118364-3	chr19	5117840	5118840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008451)	promoter-TSS (NM_008451)	68.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	24.03	21.2	9.25	26.99	12.6	29.74	15.84	14.59	12.49
Merged-chr9-50591030-3	chr9	50590530	50591530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12819.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	103.54	97.23	71.22	96.48	73.71	73.95	94.0	86.22	91.18
Merged-chr18-88971718-3	chr18	88971205	88972205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175542)	promoter-TSS (NM_175542)	-85.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	13.16	14.28	7.4	15.52	10.26	13.66	25.35	18.13	14.36
Merged-chrX-166170351-3	chrX	166169860	166170860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146238)	promoter-TSS (NM_146238)	-94.0	NM_146238	237221.0	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem nuclear organelle associated protein 8	protein-coding	35.47	45.62	33.3	37.11	37.79	36.17	36.97	59.25	19.98
Merged-chr19-6268975-3	chr19	6268475	6269475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	4131.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	65.21	78.79	66.6	86.36	41.99	75.56	86.61	79.59	71.82
Merged-chr19-28990390-3	chr19	28989893	28990893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302443)	promoter-TSS (NM_001302443)	41.0	NM_025950	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	117.84	113.81	84.17	136.97	108.23	133.43	143.64	134.42	74.94
Merged-chr6-122308763-3	chr6	122308247	122309247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010749)	promoter-TSS (NM_010749)	27.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	157.31	183.39	114.69	146.41	183.8	156.74	180.61	201.63	100.55
Merged-chr13-74563992-3	chr13	74563476	74564476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70026.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	42.33	32.72	53.65	55.33	29.86	62.7	60.2	60.13	40.59
Merged-chr3-37419742-3	chr3	37419240	37420240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163511)	promoter-TSS (NM_001163511)	-144.0	NM_153561	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	240.83	223.48	169.27	201.74	243.05	184.87	203.84	304.21	124.28
Merged-chr4-9630700-3	chr4	9630190	9631190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	13027.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	282.59	238.69	109.14	271.91	183.8	173.62	265.1	273.7	169.87
Merged-chr15-95802951-2	chr15	95802440	95803440	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	12097.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	45.76	42.85	40.7	88.39	54.58	46.62	76.05	65.88	44.34
Merged-chr11-119863612-3	chr11	119863102	119864102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-18687.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	88.67	101.37	62.9	114.7	94.7	99.67	120.41	127.79	69.32
Merged-chr16-75877382-3	chr16	75876874	75877874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 4 of 7)	intron (NM_023380, intron 4 of 7)	31892.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	100.11	98.15	48.1	73.54	64.38	57.87	69.71	79.15	32.48
Merged-chr13-21811781-1	chr13	21811281	21812281	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175657)	promoter-TSS (NM_175657)	-3.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	6.29	2.76	12.02	12.14	1.87	4.82	14.79	14.15	3.75
Merged-chr1-138261715-3	chr1	138261196	138262196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12042.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	64.64	74.19	37.92	68.82	50.38	55.46	48.58	43.77	39.35
Merged-chr14-103099054-4	chr14	103098588	103099588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-84.0	NM_001347601	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	295.75	257.58	251.59	359.62	242.12	161.56	295.73	190.13	151.14
Merged-chr16-92826117-3	chr16	92825642	92826642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-68.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	235.69	235.46	149.84	257.74	262.18	200.95	250.32	297.14	150.51
Merged-chr15-53139476-2	chr15	53138981	53139981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	206702.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	185.92	170.95	77.7	174.75	123.16	146.29	105.62	123.81	44.97
Merged-chr8-111522202-3	chr8	111521691	111522691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176923)	promoter-TSS (NM_176923)	-84.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	37.18	23.04	20.35	23.62	17.73	30.54	52.81	39.8	20.61
Merged-chr2-166713031-3	chr2	166712529	166713529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	803.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	403.87	330.38	236.79	389.31	284.57	275.7	378.11	377.17	208.59
Merged-chr16-62854320-3	chr16	62853816	62854816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011173)	promoter-TSS (NM_011173)	9.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	74.37	71.42	37.92	78.27	46.18	61.89	61.26	44.66	62.45
Merged-chr13-89889220-3	chr13	89888697	89889697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-146685.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	20.59	22.12	8.32	22.94	21.93	33.76	12.67	11.05	9.37
Merged-chr9-57131248-3	chr9	57130751	57131751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102289)	promoter-TSS (NR_102289)	39.0	NR_102289	76794.0	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	217.95	182.47	243.26	174.08	244.92	205.77	157.37	169.35	164.88
Merged-chr7-128381184-3	chr7	128380673	128381673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	36999.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	62.93	49.3	33.3	56.0	44.32	55.46	29.57	29.18	25.61
Merged-chr1-64600832-3	chr1	64600349	64601349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	16319.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	109.83	131.32	61.97	75.57	51.78	58.68	58.09	75.61	44.34
Merged-chr15-96642968-4	chr15	96642430	96643430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	-17.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	253.42	241.45	190.54	342.76	309.3	249.17	324.25	297.14	176.12
Merged-chr19-44069411-3	chr19	44068899	44069899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145502, exon 1 of 11)	5' UTR (NM_145502, exon 1 of 11)	287.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	183.63	154.82	149.84	150.46	109.63	127.8	132.02	133.53	84.94
Merged-chr1-53313655-3	chr1	53313154	53314154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104361)	promoter-TSS (NR_104361)	30.0	NR_104360	72085.0	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	137.29	199.52	75.85	159.23	185.67	143.07	151.03	156.97	78.69
Merged-chr2-181541991-3	chr2	181541498	181542498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271585, intron 2 of 5)	intron (NM_001271585, intron 2 of 5)	21513.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	32.04	42.85	19.42	45.88	76.51	53.85	31.69	34.93	28.73
Merged-chr17-25273506-3	chr17	25273005	25274005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027452)	promoter-TSS (NR_027452)	-74.0	NM_001177610	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	529.15	509.17	316.33	497.94	473.97	319.91	474.23	394.86	239.82
Merged-chr1-182380843-3	chr1	182380331	182381331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28336.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	41.76	34.56	20.35	37.11	23.33	32.96	33.8	26.53	13.74
Merged-chr8-46893132-3	chr8	46892659	46893659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-93728.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	208.23	170.95	106.37	190.95	146.02	157.54	163.71	184.38	113.04
Merged-chr9-53248203-3	chr9	53247709	53248709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029936)	promoter-TSS (NM_029936)	-97.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	50.91	60.36	41.62	50.6	66.71	57.07	67.6	102.58	43.72
Merged-chr11-69134458-3	chr11	69133966	69134966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011786, exon 10 of 15)	exon (NM_011786, exon 10 of 15)	8089.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	30.32	23.5	13.87	45.88	38.72	50.64	44.36	37.14	28.73
Merged-chr14-17659154-3	chr14	17658659	17659659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1801.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	44.05	57.6	21.27	45.21	33.12	58.68	31.69	37.14	9.37
Merged-chr4-125123001-3	chr4	125122499	125123499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4882.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	93.24	55.75	74.92	59.38	46.65	55.46	83.44	62.35	36.22
Merged-chr12-80132185-1	chr12	80131685	80132685	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033514, intron 1 of 2)	intron (NR_033514, intron 1 of 2)	659.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	352.39	366.32	238.64	359.62	297.63	254.0	389.73	363.9	200.47
Merged-chr2-3355957-3	chr2	3355390	3356390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	10679.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	55.49	45.62	51.8	61.4	33.59	61.89	28.52	22.99	14.99
Merged-chr17-17394183-1	chr17	17393683	17394683	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025934, exon 10 of 10)	3' UTR (NM_025934, exon 10 of 10)	-8503.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	106.97	146.99	98.05	118.08	95.63	69.13	105.62	125.58	71.2
Merged-chr17-69382828-3	chr17	69382328	69383328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356283)	promoter-TSS (NM_001356283)	-347.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	100.11	72.34	86.02	80.97	62.05	78.77	105.62	49.96	53.08
Merged-chr2-154408052-3	chr2	154407566	154408566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009228)	promoter-TSS (NM_009228)	18.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	72.08	69.58	80.47	103.23	58.31	81.99	97.17	35.82	56.21
Merged-chr7-24884510-3	chr7	24883998	24884998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360119)	promoter-TSS (NM_001360119)	-94.0	NM_001360128	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	147.02	149.29	148.92	101.88	124.09	185.68	158.43	138.4	136.15
Merged-chr3-52105091-3	chr3	52104623	52105623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004176)	promoter-TSS (NM_001004176)	-117.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	71.51	37.32	53.65	66.8	50.38	78.77	71.82	37.14	40.59
Merged-chr13-63702038-2	chr13	63701546	63702546	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	32252.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	2.86	0.0	0.0	34.41	21.46	6.43	39.08	23.43	20.61
Merged-chr4-126131933-3	chr4	126131487	126132487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 6 of 10)	intron (NM_028800, intron 6 of 10)	-16016.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	168.18	137.77	119.32	118.08	97.03	132.63	128.85	159.18	78.07
Merged-chr2-80524453-3	chr2	80523939	80524939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355411, intron 19 of 30)	intron (NM_001355411, intron 19 of 30)	56743.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	6.29	4.15	9.25	8.1	3.27	4.82	5.28	4.42	5.0
Merged-chr2-174415786-3	chr2	174415283	174416283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020580)	promoter-TSS (NM_020580)	-21.0	NM_020580	57314.0	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	42.33	54.37	46.25	74.89	51.32	51.44	59.15	49.08	36.22
Merged-chr17-56256669-3	chr17	56256155	56257155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010192)	promoter-TSS (NM_010192)	-138.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	298.04	273.25	209.04	222.66	250.05	195.32	224.97	324.11	171.12
Merged-chr13-43561230-3	chr13	43560753	43561753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-1062.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	151.02	98.15	110.99	169.35	81.64	105.3	153.15	146.36	86.18
Merged-chr2-109918267-1	chr2	109917767	109918767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_172671, exon 1 of 18)	exon (NM_172671, exon 1 of 18)	620.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	30.89	12.9	20.35	31.04	13.06	16.08	23.24	7.96	14.99
Merged-chr10-69309276-3	chr10	69308761	69309761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43651.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	37.76	22.12	25.9	50.6	15.86	29.74	48.58	28.3	26.23
Merged-chr3-96197606-3	chr3	96197118	96198118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026975)	promoter-TSS (NM_026975)	-32.0	NM_026975	69168.0	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	116.7	148.83	85.1	138.99	163.74	69.93	111.96	103.02	53.71
Merged-chr6-117907717-3	chr6	117907220	117908220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166428)	intron (NM_133834, intron 1 of 3)	-84.0	NM_001166428	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	490.82	433.14	421.78	425.07	432.45	338.39	332.7	336.93	255.43
Merged-chr7-92885624-3	chr7	92885129	92886129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	LTR48B|LTR|ERV1	10376.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	143.01	163.12	89.72	174.08	171.68	116.55	158.43	188.36	101.17
Merged-chr3-40500601-3	chr3	40500090	40501090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	22322.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	9.15	12.9	18.5	20.92	12.6	38.58	52.81	33.16	38.72
Merged-chr4-136142867-2	chr4	136142366	136143366	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-956.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	279.73	252.51	203.49	263.81	223.92	213.81	307.35	343.12	159.88
Merged-chr5-105599019-3	chr5	105598514	105599514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	79543.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	132.14	101.83	61.97	165.98	125.02	108.51	105.62	80.03	47.46
Merged-chr11-70655078-3	chr11	70654561	70655561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-411.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	158.46	129.48	118.39	152.49	117.56	133.43	183.78	229.04	93.05
Merged-chr1-74237086-3	chr1	74236582	74237582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	CpG	565.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	332.36	380.61	344.08	305.65	304.63	341.61	366.5	387.78	231.7
Merged-chr11-20632479-3	chr11	20631968	20632968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038625, intron 1 of 1)	CpG	491.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	368.4	357.57	300.61	383.24	352.68	305.44	328.47	369.65	233.57
Merged-chr5-122850049-3	chr5	122849554	122850554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030564)	promoter-TSS (NM_030564)	-134.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	354.67	323.47	232.16	309.7	318.63	268.47	320.02	320.57	232.32
Merged-chr11-114675463-3	chr11	114674995	114675995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053273)	promoter-TSS (NM_053273)	27.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	104.11	66.81	119.32	83.66	76.04	91.63	101.39	112.31	81.81
Merged-chr1-77832375-3	chr1	77831872	77832872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-317284.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	47.48	39.63	19.42	32.39	27.52	27.33	59.15	37.58	26.85
Merged-chr11-120713805-3	chr11	120713299	120714299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016665)	promoter-TSS (NM_016665)	9.0	NM_001347611	20892.0	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	14.3	16.13	35.15	20.24	16.79	25.72	17.96	19.46	11.87
Merged-chr2-158156656-3	chr2	158156164	158157164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10272.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	15.45	14.28	7.4	13.49	8.86	16.08	21.12	18.13	3.75
Merged-chr5-122653477-2	chr5	122652972	122653972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 2 of 12)	intron (NM_001038845, intron 2 of 12)	3048.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	34.9	17.51	12.95	42.51	21.46	16.08	15.84	13.27	7.49
Merged-chr2-121955960-3	chr2	121955459	121956459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-42.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	106.4	131.78	104.52	122.8	124.56	126.19	159.48	169.35	90.56
Merged-chr18-54847117-3	chr18	54846628	54847628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143052.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	142.44	176.94	95.27	144.39	110.1	106.1	145.75	139.72	106.79
Merged-chr17-35242804-3	chr17	35242358	35243358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	41.0	NM_001252457	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	305.48	247.9	153.54	301.6	222.06	182.46	219.69	218.87	103.67
Merged-chr16-35938927-3	chr16	35938397	35939397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030253, exon 1 of 11)	5' UTR (NM_030253, exon 1 of 11)	130.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	214.52	230.39	130.42	212.54	190.8	145.49	242.92	285.2	145.51
Merged-chr1-176824066-3	chr1	176823559	176824559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9399.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	325.5	258.5	131.34	299.57	232.79	158.35	323.19	468.7	187.36
Merged-chr3-9713671-3	chr3	9713161	9714161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-103576.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	12.01	12.44	3.7	13.49	18.19	12.86	17.96	18.57	16.24
Merged-chr3-55652528-3	chr3	55652042	55653042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-129968.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	25.17	26.73	21.27	25.64	22.86	34.56	35.91	25.65	18.74
Merged-chr5-21187000-3	chr5	21186496	21187496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	729.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	196.79	159.89	134.12	177.45	106.36	159.95	164.76	122.92	125.53
Merged-chr4-124772345-2	chr4	124771839	124772839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008385, intron 7 of 23)	L2a|LINE|L2	-20985.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	50.91	50.23	60.12	48.58	39.65	60.28	16.9	8.84	6.25
Merged-chr2-52943872-3	chr2	52943376	52944376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	86008.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	147.59	103.22	48.1	186.9	111.96	99.67	141.53	95.07	54.96
Merged-chr3-95625337-3	chr3	95624885	95625885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001026212, intron 1 of 2)	intron (NM_001026212, intron 1 of 2)	405.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	195.07	170.03	108.22	174.75	118.03	108.51	163.71	176.87	83.69
Merged-chr16-10838668-3	chr16	10838174	10839174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162932, intron 1 of 1)	intron (NM_001162932, intron 1 of 1)	3615.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	25.74	6.91	1.85	12.14	2.33	1.61	14.79	0.88	2.5
Merged-chr14-54754759-3	chr14	54754252	54755252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27134.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	197.36	177.86	117.47	165.98	123.62	128.61	188.0	244.96	114.29
Merged-chr8-119862202-3	chr8	119861727	119862727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146219)	promoter-TSS (NM_146219)	-78.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	25.74	23.96	24.05	24.29	21.93	29.74	45.42	18.13	13.12
Merged-chr5-103425155-3	chr5	103424624	103425624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011204)	promoter-TSS (NM_011204)	-68.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	2.29	2.76	0.0	2.7	2.8	3.22	4.22	2.65	0.0
Merged-chr7-25237918-3	chr7	25237461	25238461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001031667)	promoter-TSS (NM_001031667)	-110.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	188.78	152.06	109.14	144.39	96.1	125.39	162.65	141.49	88.68
Merged-chr11-78301528-3	chr11	78301039	78302039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017407)	promoter-TSS (NM_017407)	-52.0	NM_017407	54141.0	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	18.31	10.6	7.4	10.12	12.6	8.04	14.79	11.94	8.12
Merged-chr4-53412168-3	chr4	53411654	53412654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28259.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	45.76	32.72	19.42	37.11	32.19	40.99	38.02	44.22	18.74
Merged-chr17-85090603-3	chr17	85090095	85091095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163624)	promoter-TSS (NM_001163624)	-105.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	106.4	93.08	87.87	72.19	81.64	109.32	82.38	83.13	39.35
Merged-chr10-88146956-3	chr10	88146462	88147462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027191)	promoter-TSS (NM_027191)	-21.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	16.02	10.6	9.25	20.92	18.66	14.47	17.96	13.27	11.24
Merged-chr9-56041885-3	chr9	56041392	56042392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011992)	promoter-TSS (NM_011992)	47.0	NM_011992	26611.0	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	159.03	149.75	89.72	151.14	160.01	135.04	132.02	110.1	94.3
Merged-chr11-95666880-3	chr11	95666386	95667386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008831)	promoter-TSS (NM_008831)	-71.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	25.17	20.27	24.05	28.34	28.46	33.76	46.47	51.73	28.1
Merged-chr17-35165002-3	chr17	35164502	35165502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-125.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	458.21	315.64	183.14	367.05	240.72	191.3	264.05	289.18	155.51
Merged-chr3-30968989-2	chr3	30968485	30969485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165954, intron 1 of 14)	CpG	430.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	137.86	141.0	148.92	148.44	143.22	127.8	183.78	117.62	82.44
Merged-chr1-180771940-3	chr1	180771452	180772452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41653.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	24.6	15.21	14.8	27.66	20.06	22.51	41.19	29.18	24.36
Merged-chr5-9087085-3	chr5	9086588	9087588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13649.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	53.77	36.4	41.62	37.78	24.26	47.42	54.92	31.84	61.83
Merged-chr8-79143949-3	chr8	79143436	79144436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	104647.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	40.62	36.4	7.4	44.53	26.12	40.19	32.74	32.28	19.98
Merged-chr16-76202104-3	chr16	76201624	76202624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79511.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	132.72	93.54	62.9	173.4	127.36	81.18	134.14	131.77	71.2
Merged-chr8-36238253-3	chr8	36237748	36238748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	intron (NM_001081150, intron 1 of 11)	11268.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	21.17	9.22	7.4	20.24	9.33	8.04	11.62	5.31	3.12
Merged-chr11-89024435-3	chr11	89023869	89024869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24966.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	153.88	139.16	65.67	149.79	107.3	110.92	144.7	165.37	78.07
Merged-chr2-167690717-3	chr2	167690288	167691288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	29.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	259.71	303.66	222.91	265.16	334.95	252.39	308.41	368.33	221.08
Merged-chr17-50674729-3	chr17	50674222	50675222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 5 of 5)	LTR48B|LTR|ERV1	-23959.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	45.19	44.7	41.62	31.71	33.12	33.76	60.2	51.29	40.59
Merged-chr13-85223364-2	chr13	85222868	85223868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 20 of 24)	intron (NM_145452, intron 20 of 24)	33983.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	15.45	21.2	22.2	18.22	14.93	16.88	6.34	5.31	6.25
Merged-chr2-148393337-3	chr2	148392846	148393846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2031.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	14.3	11.06	11.1	10.8	8.86	8.04	9.51	10.17	0.0
Merged-chr2-30066343-3	chr2	30065873	30066873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204875)	promoter-TSS (NM_001204875)	-101.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	92.1	69.12	101.74	91.76	61.58	92.44	99.28	71.19	56.83
Merged-chr1-86399529-3	chr1	86399027	86400027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10166.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	52.06	47.0	46.25	54.65	36.85	31.35	55.98	49.08	29.35
Merged-chr7-19004133-3	chr7	19003669	19004669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178757, exon 1 of 1)	5' UTR (NM_178757, exon 1 of 1)	104.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	82.38	70.96	82.32	50.6	44.78	56.27	85.55	52.18	41.22
Merged-chr9-53667505-3	chr9	53667005	53668005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027807)	promoter-TSS (NM_027807)	2.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	400.44	402.73	232.16	347.48	438.52	299.81	349.6	349.31	165.5
Merged-chr11-100545619-3	chr11	100545092	100546092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028918)	promoter-TSS (NM_028918)	-40.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	139.58	111.51	74.0	143.71	118.96	59.48	140.47	167.14	79.32
Merged-chrX-37110401-3	chrX	37109889	37110889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026573)	promoter-TSS (NM_026573)	-67.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	47.48	54.37	68.45	48.58	52.72	55.46	55.98	58.81	51.84
Merged-chr6-54595181-3	chr6	54594667	54595667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164361)	promoter-TSS (NM_001164361)	56.0	NM_001164361	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	24.03	20.27	18.5	32.39	26.12	33.76	15.84	13.71	6.25
Merged-chr1-127786054-3	chr1	127785553	127786553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	11889.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	33.75	43.77	30.52	21.59	18.66	20.09	32.74	34.05	18.11
Merged-chr6-136690247-3	chr6	136689779	136690779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28386.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	133.86	106.44	86.95	78.27	69.98	86.81	170.05	158.3	126.78
Merged-chr9-70656244-3	chr9	70655766	70656766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	908.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	170.47	194.45	167.42	178.8	221.13	174.42	193.28	230.81	133.65
Merged-chr13-23562476-3	chr13	23562007	23563007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178205)	promoter-TSS (NM_178205)	-142.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	219.67	157.59	130.42	211.19	113.36	130.21	186.94	171.12	109.92
Merged-chr11-78345977-3	chr11	78345475	78346475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313987)	promoter-TSS (NM_001313987)	391.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	78.37	79.72	85.1	75.57	67.64	79.58	99.28	103.47	62.45
Merged-chr13-17804651-1	chr13	17804151	17805151	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	446.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	340.94	309.65	449.53	273.94	233.72	270.07	342.2	179.52	227.33
Merged-chr4-126438514-3	chr4	126437998	126438998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001317173, exon 19 of 19)	3' UTR (NM_001317173, exon 19 of 19)	-8956.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	212.8	176.02	102.67	145.06	97.5	115.75	186.94	190.13	91.81
Merged-chr7-30321710-3	chr7	30321189	30322189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033140, exon 1 of 1)	3' UTR (NM_001033140, exon 1 of 1)	686.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	151.59	135.93	118.39	187.57	194.53	168.8	103.51	80.92	74.94
Merged-chr19-29812971-3	chr19	29812452	29813452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177721)	promoter-TSS (NM_177721)	22.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	108.12	104.14	60.12	99.86	93.3	69.13	90.83	91.53	44.97
Merged-chr3-22077453-3	chr3	22076953	22077953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	801.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	176.19	193.99	219.21	213.21	157.21	142.27	274.61	175.54	115.54
Merged-chr10-99107114-3	chr10	99106643	99107643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015737)	promoter-TSS (NM_015737)	61.0	NR_153333	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	73.22	53.91	46.25	101.88	65.78	46.62	96.11	72.07	59.33
Merged-chr15-96709237-2	chr15	96708728	96709728	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9500.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	122.99	65.89	56.42	105.26	92.84	56.27	92.94	85.78	48.71
Merged-chr10-81298877-3	chr10	81298392	81299392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	L1MB7|LINE|L1	5929.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	371.26	317.02	223.84	383.24	326.09	288.56	245.04	315.27	158.01
Merged-chr11-106741478-3	chr11	106740969	106741969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-9757.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	86.38	45.62	42.55	70.85	20.53	45.01	47.53	41.12	47.46
Merged-chr7-96302881-2	chr7	96302373	96303373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	-2794.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	8.01	8.29	1.85	4.72	8.86	16.88	2.11	0.44	3.75
Merged-chrX-96095993-3	chrX	96095486	96096486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010833)	promoter-TSS (NM_010833)	-59.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	40.04	47.92	38.85	52.63	36.39	39.39	46.47	35.37	40.59
Merged-chr5-113854770-1	chr5	113854270	113855270	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011779, intron 3 of 10)	intron (NM_011779, intron 3 of 10)	-24269.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	5.72	1.38	0.0	10.8	6.53	5.63	4.22	6.19	3.75
Merged-chr11-85353077-3	chr11	85352553	85353553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166642)	promoter-TSS (NM_001166642)	-111.0	NM_001166642	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	33.18	35.48	39.77	46.56	21.93	48.23	48.58	49.96	27.48
Merged-chr7-135537792-3	chr7	135537343	135538343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316678)	promoter-TSS (NM_001316678)	19.0	NM_001316678	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	6.29	2.3	5.55	14.17	5.6	6.43	11.62	2.21	2.5
Merged-chr11-78550866-3	chr11	78550416	78551416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-181.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	116.7	91.7	69.37	122.8	125.49	94.04	101.39	120.71	54.33
Merged-chr18-54901074-3	chr18	54900578	54901578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89102.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	104.11	168.19	64.75	134.94	109.16	106.1	163.71	214.89	110.54
Merged-chr4-154142374-3	chr4	154141857	154142857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021499)	promoter-TSS (NM_021499)	-15.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	12.59	12.44	13.87	15.52	10.73	17.68	13.73	11.05	14.36
Merged-chr1-194677981-1	chr1	194677481	194678481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	58152.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	2.29	2.76	6.47	4.72	4.67	8.04	3.17	3.98	6.25
Merged-chr9-107338409-3	chr9	107337915	107338915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133984)	promoter-TSS (NM_133984)	-65.0	NM_133984	69536.0	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	41.19	58.98	63.82	43.18	42.45	66.71	66.54	63.67	21.23
Merged-chr16-76527529-5	chr16	76527009	76528009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21286.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	66.93	100.91	49.95	70.17	70.91	94.04	90.83	115.85	66.2
Merged-chr9-64022092-3	chr9	64021589	64022589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-30.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	61.21	58.06	88.8	68.15	52.25	74.75	117.24	102.14	60.58
Merged-chr3-116184584-3	chr3	116184104	116185104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54916.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	89.24	102.29	75.85	114.7	120.83	131.82	126.74	202.51	81.19
Merged-chr2-30364143-3	chr2	30363643	30364643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175392)	promoter-TSS (NM_175392)	-90.0	NM_001242407	108958.0	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	18.31	13.36	34.22	17.54	18.19	28.94	13.73	12.82	16.24
Merged-chr4-155491282-3	chr4	155490798	155491798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-63.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	602.37	362.18	435.65	511.44	309.3	344.83	436.2	334.72	274.79
Merged-chr6-148896270-3	chr6	148895817	148896817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-80.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	24.6	14.28	29.6	31.04	30.79	29.74	17.96	27.41	16.24
Merged-chr14-72604310-3	chr14	72603810	72604810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	105693.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	134.43	149.75	70.3	151.14	96.1	130.21	127.8	180.4	92.43
Merged-chr1-136008093-3	chr1	136007600	136008600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160145)	promoter-TSS (NM_001160145)	-119.0	NM_001160145	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	4.0	3.69	0.0	7.42	4.67	4.82	4.22	1.77	1.25
Merged-chr4-44234087-3	chr4	44233588	44234588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12821.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	132.14	144.23	156.32	110.65	85.37	138.25	120.41	81.36	86.18
Merged-chr18-76242210-3	chr18	76241712	76242712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010754, intron 1 of 10)	G-rich|Low_complexity|Low_complexity	511.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	95.53	71.42	119.32	118.75	65.31	98.06	138.36	59.25	63.08
Merged-chr9-111562760-3	chr9	111562253	111563253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	123672.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	34.32	25.34	48.1	33.06	24.26	63.5	42.25	46.43	40.59
Merged-chr17-35980310-2	chr17	35979811	35980811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	356.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	262.0	164.04	239.56	230.75	165.14	176.03	195.39	170.23	151.76
Merged-chr1-172522699-3	chr1	172522187	172523187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	intron (NM_027972, intron 1 of 11)	1557.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	39.47	18.89	3.7	29.69	9.33	10.45	25.35	11.94	18.74
Merged-chr1-105801401-3	chr1	105800887	105801887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	20664.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	20.02	18.89	29.6	35.76	30.32	28.13	23.24	20.78	24.36
Merged-chr16-25024786-3	chr16	25024266	25025266	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34873.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	124.71	110.13	81.4	109.98	82.11	91.63	115.12	115.85	80.56
Merged-chr2-145825417-3	chr2	145824908	145825908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	39292.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	182.49	176.48	131.34	226.03	153.95	211.4	183.78	229.48	124.28
Merged-chr10-82858659-3	chr10	82858168	82859168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015762)	promoter-TSS (NM_015762)	-538.0	NM_001042513	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	229.97	210.58	74.0	268.54	233.72	180.85	186.94	251.59	83.69
Merged-chr11-5099320-3	chr11	5098818	5099818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	45.0	NM_177370	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	557.75	450.65	362.58	508.06	451.11	409.13	487.96	478.42	279.79
Merged-chr11-75532059-3	chr11	75531553	75532553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199283)	promoter-TSS (NM_001199283)	-59.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	135.58	91.7	85.1	143.71	108.23	103.69	151.03	156.53	83.06
Merged-chr17-12758171-3	chr17	12757679	12758679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	11527.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	20.02	14.28	8.32	20.24	7.93	5.63	23.24	9.29	10.62
Merged-chr5-136908614-3	chr5	136908110	136909110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026073, intron 1 of 4)	intron (NM_026073, intron 1 of 4)	460.0	NM_026073	67286.0	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	108.12	141.92	65.67	123.47	114.29	62.7	120.41	156.53	84.31
Merged-chr4-149166707-3	chr4	149166214	149167214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356332)	promoter-TSS (NM_001356332)	-9.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	113.84	131.32	106.37	151.14	187.07	151.92	132.02	159.18	74.94
Merged-chr4-148160617-1	chr4	148160117	148161117	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176848)	promoter-TSS (NM_176848)	-51.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	10.3	10.14	2.77	20.24	2.8	6.43	12.67	5.31	9.37
Merged-chr17-80483070-3	chr17	80482570	80483570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2617.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	63.5	65.89	55.5	67.47	70.91	71.54	90.83	86.66	66.82
Merged-chr6-137694541-3	chr6	137694020	137695020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-40562.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	16.02	13.36	5.55	18.89	7.0	8.04	8.45	8.4	9.37
Merged-chr2-65407315-3	chr2	65406810	65407810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42910.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	6.29	6.91	0.0	9.45	3.27	3.22	4.22	4.86	8.74
Merged-chr15-73061145-3	chr15	73060643	73061643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180662)	promoter-TSS (NM_180662)	61.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	166.47	188.46	149.84	125.5	138.55	147.09	111.96	113.64	86.18
Merged-chr1-170853773-3	chr1	170853288	170854288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 2 of 15)	intron (NM_001081304, intron 2 of 15)	13983.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	150.45	173.72	76.77	126.85	89.57	114.14	72.88	137.96	93.68
Merged-chr4-101284135-1	chr4	101283635	101284635	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18853.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	4.58	3.23	9.25	7.42	3.73	9.65	3.17	1.33	3.75
Merged-chr19-37175296-3	chr19	37174791	37175791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290827, intron 1 of 10)	intron (NM_001290827, intron 1 of 10)	772.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	286.03	276.93	165.57	231.43	203.86	179.24	228.14	282.99	152.38
Merged-chr16-22445061-3	chr16	22444556	22445556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-5486.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	172.76	149.29	130.42	129.55	82.11	118.16	173.21	175.98	113.04
Merged-chr15-27670299-3	chr15	27669802	27670802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	11240.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	221.96	186.16	100.82	203.76	138.55	130.21	139.42	137.51	97.43
Merged-chr13-74245683-3	chr13	74245179	74246179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-36979.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	77.23	82.02	27.75	45.88	75.11	40.99	22.18	34.05	13.12
Merged-chr11-101302307-3	chr11	101301818	101302818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019584)	promoter-TSS (NM_019584)	-32.0	NM_001359821	56208.0	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	Atg6	beclin 1, autophagy related	protein-coding	141.3	124.41	95.27	108.63	132.49	91.63	143.64	135.3	78.07
Merged-chr9-87021990-3	chr9	87021539	87022539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024195)	promoter-TSS (NM_024195)	10.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	93.24	96.3	54.57	96.48	66.71	79.58	165.82	165.37	83.69
Merged-chr9-3032262-4	chr9	3031729	3032729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	6514.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	56.63	193.53	12.02	49.93	266.84	12.06	127.8	105.68	21.86
Merged-chr11-63131483-3	chr11	63130978	63131978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	21.0	NM_001302255	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	56.63	56.68	66.6	132.24	82.57	118.96	205.96	179.08	101.17
Merged-chr11-118130490-1	chr11	118129990	118130990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1271.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	10.3	5.07	3.7	4.72	1.87	1.61	1.06	3.54	3.75
Merged-chr11-4189304-3	chr11	4188800	4189800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	2467.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	96.11	104.14	61.05	138.99	90.5	93.24	71.82	102.58	46.22
Merged-chr17-69182261-3	chr17	69181770	69182770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	22914.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	260.28	256.66	186.84	258.42	259.38	227.47	235.53	311.29	129.9
Merged-chr14-120137946-3	chr14	120137452	120138452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95517.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	23.45	13.82	16.65	20.24	20.53	36.97	20.07	15.92	6.25
Merged-chr17-43201060-3	chr17	43200558	43201558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42767.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	2.86	5.99	5.55	8.77	5.6	14.47	4.22	2.65	6.25
Merged-chr8-41364126-3	chr8	41363633	41364633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	10564.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	42.9	33.18	13.87	26.99	20.99	22.51	50.7	40.68	24.36
Merged-chr1-39530406-3	chr1	39529888	39530888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5313.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	8.01	7.83	16.65	2.7	3.73	6.43	8.45	3.54	5.0
Merged-chr6-145307458-3	chr6	145306963	145307963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	56911.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	349.52	289.83	155.39	337.36	322.82	192.91	272.5	190.57	139.89
Merged-chr3-131892171-1	chr3	131891671	131892671	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-193121.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.72	3.69	9.25	2.02	2.33	4.82	6.34	2.65	3.75
Merged-chr2-181601265-3	chr2	181600774	181601774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133701)	promoter-TSS (NM_133701)	-45.0	NM_133701	68879.0	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	354.67	289.83	202.56	276.63	232.79	221.04	230.25	242.75	159.88
Merged-chr11-115004237-3	chr11	115003753	115004753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2373.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	65.79	60.36	48.1	144.39	126.89	118.16	179.55	189.69	98.05
Merged-chr4-132944328-3	chr4	132943843	132944843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21792.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	69.79	45.16	39.77	151.14	108.7	89.22	125.69	109.22	46.22
Merged-chr11-70594401-3	chr11	70593887	70594887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	-21507.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	163.61	118.42	98.05	101.21	76.04	96.45	100.34	102.58	70.57
Merged-chr16-78576768-3	chr16	78576251	78577251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252440)	promoter-TSS (NM_001252440)	-63.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	252.85	210.58	178.52	174.75	172.14	144.68	241.87	210.47	122.41
Merged-chr6-122874481-3	chr6	122873965	122874965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-92.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	216.81	249.75	186.84	243.57	182.87	227.47	227.08	229.04	122.41
Merged-chr18-70437633-3	chr18	70437112	70438112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34842.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	33.18	25.8	32.37	17.54	18.19	21.7	60.2	40.24	21.23
Merged-chr6-24665096-3	chr6	24664588	24665588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167745)	promoter-TSS (NM_001167745)	-93.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	351.24	348.35	233.09	342.08	356.88	279.72	265.1	290.95	164.25
Merged-chr14-54686799-3	chr14	54686291	54687291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023190, exon 1 of 19)	5' UTR (NM_023190, exon 1 of 19)	140.0	NM_001085473	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	180.2	193.07	210.89	175.43	201.07	167.99	231.3	219.76	123.66
Merged-chr2-128722425-3	chr2	128721916	128722916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	23501.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	128.71	97.69	60.12	96.48	71.84	71.54	101.39	110.54	63.7
Merged-chr12-76837649-3	chr12	76837100	76838100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145927, exon 1 of 12)	exon (NM_145927, exon 1 of 12)	133.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	54.92	77.41	59.2	64.1	45.25	60.28	65.48	58.37	31.85
Merged-chr7-122969837-3	chr7	122969325	122970325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	634.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	411.31	450.65	276.56	398.76	469.77	270.07	325.31	364.35	199.22
Merged-chr12-86726428-3	chr12	86725924	86726924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	36.0	NM_144524	68737.0	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	14.87	7.83	5.55	10.12	10.26	10.45	14.79	9.73	1.25
Merged-chr19-12794838-3	chr19	12794329	12795329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053009, intron 1 of 10)	CpG	1294.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	322.07	254.81	245.11	315.09	217.86	202.55	287.28	234.79	159.88
Merged-chr16-37868356-4	chr16	37867847	37868847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177093)	promoter-TSS (NM_177093)	-53.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	410.16	356.65	288.59	418.32	320.02	313.48	410.86	263.53	177.37
Merged-chr14-37134746-3	chr14	37134235	37135235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078478, intron 1 of 8)	intron (NM_078478, intron 1 of 8)	404.0	NM_001199122	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	261.43	303.2	197.02	282.03	302.3	239.53	316.86	331.18	179.86
Merged-chr16-31935434-3	chr16	31934930	31935930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	intron (NM_172822, intron 1 of 2)	1579.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	291.75	233.16	200.71	270.56	177.27	196.93	299.96	353.29	163.63
Merged-chr2-110017741-3	chr2	110017201	110018201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026613)	promoter-TSS (NM_026613)	-116.0	NM_001355581	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	45.76	58.06	13.87	51.95	49.45	35.37	26.4	26.09	18.74
Merged-chr6-116338029-3	chr6	116337527	116338527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302383)	promoter-TSS (NM_001302383)	5.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	132.72	88.01	56.42	145.06	111.5	106.9	125.69	75.17	36.85
Merged-chr4-41741397-3	chr4	41740896	41741896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286551)	promoter-TSS (NM_001286551)	-37.0	NM_001286551	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	34.9	37.32	37.0	29.69	47.12	47.42	52.81	47.31	27.48
Merged-chr11-100343213-3	chr11	100342686	100343686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	8779.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	124.14	125.33	75.85	131.57	101.7	147.09	117.24	141.94	88.68
Merged-chr13-102717184-3	chr13	102716670	102717670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23612.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	30.32	27.65	36.07	24.96	21.46	32.15	42.25	23.88	29.35
Merged-chr16-92700210-3	chr16	92699726	92700726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-2897.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	30.32	23.96	31.45	31.04	15.86	16.08	23.24	21.67	20.61
Merged-chr13-67724320-3	chr13	67723824	67724824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	4849.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	77.8	115.2	72.15	107.28	125.02	116.55	161.6	187.92	56.21
Merged-chr15-99252095-3	chr15	99251593	99252593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	-132.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	181.91	158.05	115.62	151.81	126.89	167.99	167.93	169.35	107.42
Merged-chr4-41314972-3	chr4	41314469	41315469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026893)	promoter-TSS (NM_026893)	-68.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	153.88	169.11	153.54	134.94	147.42	143.07	128.85	152.11	133.02
Merged-chr2-49451615-3	chr2	49451133	49452133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172663, exon 1 of 14)	5' UTR (NM_172663, exon 1 of 14)	147.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	341.52	232.24	190.54	282.71	210.86	172.81	282.0	177.75	134.9
Merged-chr2-164084199-3	chr2	164083684	164084684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	10006.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	148.73	119.8	91.57	115.38	93.77	103.69	107.73	114.08	68.7
Merged-chr7-30535166-3	chr7	30534670	30535670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178252)	promoter-TSS (NM_178252)	-110.0	NM_001289682	233071.0	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	11.44	4.15	12.95	10.8	1.87	3.22	4.22	1.77	3.12
Merged-chr10-117867483-3	chr10	117866974	117867974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21500.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	132.14	83.4	77.7	138.32	64.84	60.28	113.01	103.47	49.96
Merged-chr10-81244803-3	chr10	81244308	81245308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034895, intron 8 of 17)	intron (NM_001034895, intron 8 of 17)	-8127.0	NM_001285855	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	5.72	2.76	0.0	8.77	2.8	0.0	6.34	3.98	3.12
Merged-chr2-160214772-3	chr2	160214270	160215270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	112724.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	112.69	82.94	82.32	132.92	83.04	104.49	128.85	114.96	71.2
Merged-chr4-7170369-1	chr4	7169869	7170869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-179646.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	10.87	5.53	5.55	1.35	0.0	3.22	0.0	0.88	0.0
Merged-chr10-96616876-3	chr10	96616360	96617360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007569)	promoter-TSS (NM_007569)	-141.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	176.76	170.03	146.14	201.74	172.61	184.07	179.55	213.12	103.67
Merged-chr10-21376878-1	chr10	21376378	21377378	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178713)	promoter-TSS (NM_178713)	-422.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	2.29	2.76	3.7	2.02	1.87	4.82	4.22	0.88	6.25
Merged-chr19-32309597-3	chr19	32309097	32310097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	MTD|LTR|ERVL-MaLR	39719.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	18.88	6.91	14.8	14.17	8.4	8.84	4.22	3.98	6.87
Merged-chr17-64661521-3	chr17	64661026	64662026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 6 of 21)	RLTR9E|LTR|ERVK	59877.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	32.04	35.02	27.75	41.16	28.46	28.13	35.91	44.66	18.74
Merged-chr17-29478478-3	chr17	29478006	29479006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-12539.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	40.62	32.25	22.2	59.38	37.79	49.83	68.65	65.88	43.72
Merged-chr6-34481387-3	chr6	34480893	34481893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	5037.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	14.3	12.44	12.95	12.14	5.13	4.82	9.51	9.73	12.49
Merged-chr7-28375707-3	chr7	28375203	28376203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-3041.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	269.44	226.71	184.99	226.71	140.89	155.13	193.28	211.36	139.89
Merged-chr16-31274820-1	chr16	31274320	31275320	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025800, intron 1 of 5)	CpG	457.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	227.68	206.43	149.84	187.57	187.54	178.44	179.55	164.04	118.04
Merged-chr11-29986471-3	chr11	29985954	29986954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 2 of 41)	RLTR20C|LTR|ERVK	39579.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	9.72	20.74	14.8	12.82	14.93	20.09	15.84	8.4	16.86
Merged-chr13-12461517-3	chr13	12461025	12462025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018886, exon 1 of 10)	5' UTR (NM_018886, exon 1 of 10)	213.0	NM_001291060	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	256.85	252.97	215.51	267.86	263.11	237.12	277.78	340.91	161.75
Merged-chr13-60724126-3	chr13	60723553	60724553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 11 of 26)	(CA)n|Simple_repeat|Simple_repeat	62311.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	142.44	118.42	84.17	176.1	116.16	160.76	72.88	76.94	59.33
Merged-chr1-64374075-3	chr1	64373594	64374594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158710.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	328.93	369.55	218.29	312.39	263.58	249.98	287.28	330.3	148.64
Merged-chr2-91083126-3	chr2	91082664	91083664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12849.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	358.11	278.77	221.06	328.59	240.25	263.64	333.75	313.94	169.87
Merged-chr8-119838561-3	chr8	119838064	119839064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	ID_B1|SINE|B4	2015.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	205.94	152.52	89.72	219.96	135.29	131.02	146.81	176.42	78.69
Merged-chr11-98836808-3	chr11	98836317	98837317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080925)	promoter-TSS (NM_001080925)	32.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	6.86	3.23	3.7	12.82	4.2	1.61	4.22	3.54	1.25
Merged-chr2-22822483-3	chr2	22821984	22822984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 3 of 13)	intron (NM_019456, intron 3 of 13)	48157.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	38.9	24.42	27.75	47.23	30.32	24.92	19.01	18.57	17.49
Merged-chr17-84328647-1	chr17	84328147	84329147	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	137561.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	29.75	41.93	28.67	31.71	25.19	40.19	32.74	41.12	14.99
Merged-chr17-26252959-3	chr17	26252473	26253473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025881)	promoter-TSS (NM_025881)	63.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	183.63	222.56	148.92	160.58	182.4	167.19	164.76	153.87	122.41
Merged-chr14-103481759-3	chr14	103481259	103482259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31582.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	76.08	69.12	43.47	85.01	42.92	47.42	69.71	76.94	56.83
Merged-chr4-9116014-3	chr4	9115501	9116501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153292.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	48.62	47.0	22.2	61.4	74.64	73.95	89.78	95.95	51.84
Merged-chr6-91716452-3	chr6	91715942	91716942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	32375.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	200.79	221.18	124.87	207.81	196.4	177.64	209.12	232.58	102.42
Merged-chr12-71003873-3	chr12	71003326	71004326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	B2_Mm1t|SINE|B2	11997.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	64.64	66.81	46.25	45.88	43.85	41.8	53.87	49.08	39.97
Merged-chr2-152806710-1	chr2	152806210	152807210	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	L2|LINE|L2	21779.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	195.64	188.46	91.57	261.12	226.26	215.42	243.98	233.46	108.67
Merged-chr5-140765618-3	chr5	140765140	140766140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	41513.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	243.69	239.15	211.81	245.6	200.6	246.76	157.37	214.01	106.79
Merged-chr7-98361423-3	chr7	98360912	98361912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168539)	promoter-TSS (NM_001168539)	-84.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	102.4	73.73	108.22	101.88	77.44	102.08	105.62	96.83	58.71
Merged-chr3-95357225-3	chr3	95356711	95357711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018877)	promoter-TSS (NM_018877)	-9.0	NM_001163642	84505.0	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	19.45	11.52	27.75	20.24	11.2	16.88	29.57	25.2	21.23
Merged-chr13-23423929-3	chr13	23423420	23424420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013924)	promoter-TSS (NM_013924)	-54.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	63.5	60.82	46.25	63.42	46.65	53.85	65.48	53.94	46.22
Merged-chr19-29641230-3	chr19	29640728	29641728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	7187.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	66.93	65.43	55.5	57.35	57.85	61.09	92.94	91.97	38.1
Merged-chr5-53590444-3	chr5	53589938	53590938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277116)	promoter-TSS (NM_001277116)	-48.0	NM_001359152	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	180.77	139.16	171.12	185.55	141.82	126.19	165.82	122.04	81.19
Merged-chr1-85601019-3	chr1	85600517	85601517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013817, exon 1 of 17)	5' UTR (NM_001013817, exon 1 of 17)	314.0	NM_001013817	434484.0	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	116.13	148.83	101.74	109.3	115.23	110.92	128.85	112.75	103.67
Merged-chr2-155979461-3	chr2	155978956	155979956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130000, intron 19 of 32)	intron (NM_001130000, intron 19 of 32)	22898.0	NM_177217	16328.0	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	89.24	81.1	83.25	148.44	126.89	98.87	98.23	90.2	51.21
Merged-chr8-126908939-3	chr8	126908414	126909414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37007.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	16.02	14.75	3.7	35.09	22.86	6.43	16.9	12.38	3.75
Merged-chr16-91002399-3	chr16	91001915	91002915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	8680.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	276.87	310.11	177.59	250.99	196.4	138.25	267.21	314.38	157.38
Merged-chr17-70834629-3	chr17	70834152	70835152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12125.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	327.79	254.35	190.54	304.97	245.85	239.53	283.06	294.93	199.22
Merged-chr2-153109055-3	chr2	153108556	153109556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	588.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	150.45	158.97	169.27	124.82	109.16	195.32	139.42	140.61	123.03
Merged-chr11-116433992-3	chr11	116433484	116434484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003376)	promoter-TSS (NR_003376)	-110.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	113.84	96.3	61.97	109.98	64.84	60.28	128.85	120.27	59.33
Merged-chr6-114458390-3	chr6	114457872	114458872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317124)	promoter-TSS (NM_001317124)	-150.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	177.91	212.42	128.57	200.39	156.28	144.68	210.18	255.13	123.66
Merged-chr15-39962632-3	chr15	39962155	39963155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045719)	promoter-TSS (NR_045719)	6.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	60.07	34.1	56.42	102.56	72.31	53.85	38.02	38.03	25.61
Merged-chr8-124520739-3	chr8	124520228	124521228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029746)	promoter-TSS (NM_029746)	-39.0	NM_029746	76332.0	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	45.76	39.17	37.92	45.21	36.85	31.35	43.3	38.47	22.48
Merged-chr18-82569050-3	chr18	82568556	82569556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	14548.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	17.73	28.57	12.02	8.1	9.33	12.86	7.39	8.4	7.49
Merged-chr2-36272786-3	chr2	36272300	36273300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42374.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	43.48	46.08	55.5	51.95	40.12	73.95	40.14	33.16	28.73
Merged-chr19-55660353-3	chr19	55659837	55660837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	41867.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	149.88	108.75	85.1	169.35	93.3	115.75	107.73	114.96	74.94
Merged-chr12-101083685-3	chr12	101083205	101084205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_211355)	promoter-TSS (NM_211355)	-3.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	319.78	397.66	281.19	300.92	387.67	307.85	313.69	302.0	210.47
Merged-chr6-124808863-3	chr6	124808377	124809377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306052)	promoter-TSS (NM_001306052)	-8.0	NM_001306052	14794.0	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	154.45	138.24	122.09	173.4	121.29	149.5	195.39	174.66	107.42
Merged-chr11-83737472-3	chr11	83736971	83737971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-9469.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	117.84	137.77	69.37	138.32	79.77	109.32	107.73	159.18	83.06
Merged-chr5-129002776-3	chr5	129002275	129003275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	5797.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	90.38	112.89	81.4	132.92	130.16	102.08	96.11	118.06	58.71
Merged-chr14-122060860-3	chr14	122060373	122061373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26199.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	9.72	2.76	1.85	12.14	5.13	3.22	6.34	1.77	2.5
Merged-chr3-144677661-3	chr3	144677202	144678202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42633.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	78.37	83.86	72.15	139.67	108.7	81.99	41.19	23.43	11.24
Merged-chr5-137030232-3	chr5	137029749	137030749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039385)	promoter-TSS (NM_001039385)	-46.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	9.72	3.23	1.85	9.45	0.93	1.61	3.17	2.21	2.5
Merged-chr18-53921166-3	chr18	53920676	53921676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59063.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	66.36	89.39	34.22	84.34	71.84	55.46	99.28	126.9	49.96
Merged-chr15-81523404-3	chr15	81522929	81523929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57113.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	256.85	241.91	173.89	273.26	205.26	222.65	292.56	356.39	179.24
Merged-chr13-38193029-2	chr13	38192532	38193532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023842, exon 23 of 24)	exon (NM_023842, exon 23 of 24)	-11907.0	NM_026382	67797.0	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	24.03	24.42	29.6	31.04	27.52	38.58	3.17	2.21	2.5
Merged-chr18-80413423-3	chr18	80412923	80413923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-49169.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	55.49	60.82	39.77	66.12	38.72	24.92	25.35	28.74	14.36
Merged-chr16-91398278-3	chr16	91397767	91398767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7968.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	413.02	335.45	202.56	355.58	252.38	188.09	279.89	383.8	158.01
Merged-chr12-113141523-3	chr12	113141017	113142017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347443, intron 1 of 6)	intron (NM_001347443, intron 1 of 6)	912.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	88.67	73.73	40.7	66.12	27.52	22.51	52.81	43.77	28.73
Merged-chr16-85084350-3	chr16	85083845	85084845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 3 of 15)	intron (NM_001198825, intron 3 of 15)	89362.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	13.16	8.75	8.32	10.12	5.6	20.09	7.39	6.19	5.0
Merged-chr12-100199486-3	chr12	100198967	100199967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009790)	promoter-TSS (NM_009790)	32.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	290.03	269.56	252.51	292.83	240.25	234.71	261.93	312.61	169.25
Merged-chr4-150509282-3	chr4	150508787	150509787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 9 of 22)	intron (NM_001085492, intron 9 of 22)	142887.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	93.82	73.26	78.62	80.97	70.91	75.56	62.31	76.94	44.97
Merged-chr15-51951674-3	chr15	51951164	51952164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	40096.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	28.6	29.03	24.05	22.27	31.72	10.45	52.81	56.6	11.87
Merged-chr10-17796289-3	chr10	17795825	17796825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138628, exon 1 of 10)	5' UTR (NM_138628, exon 1 of 10)	106.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	20.02	19.81	18.5	32.39	19.59	16.08	34.85	21.67	27.48
Merged-chr17-46144262-3	chr17	46143764	46144764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029338)	promoter-TSS (NM_029338)	-66.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	20.59	13.36	5.55	14.84	18.19	24.11	17.96	19.01	21.23
Merged-chr2-132710688-3	chr2	132710176	132711176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	20078.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	13.73	14.28	9.25	28.34	15.39	16.08	6.34	5.31	1.87
Merged-chr7-142449361-3	chr7	142448858	142449858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6890.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	20.02	13.36	17.57	6.75	5.6	6.43	8.45	15.92	12.49
Merged-chr19-34515928-3	chr19	34515436	34516436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	11538.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	254.56	258.04	129.49	254.37	190.34	167.19	210.18	255.13	175.49
Merged-chr6-13871149-3	chr6	13870671	13871671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045995)	promoter-TSS (NR_045995)	347.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	258.0	329.92	201.64	266.51	262.64	186.48	256.65	376.28	164.25
Merged-chr11-106736446-3	chr11	106735935	106736935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-14791.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	141.87	117.96	84.17	121.45	95.63	111.73	115.12	113.19	80.56
Merged-chr19-6276719-3	chr19	6276230	6277230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010119)	promoter-TSS (NM_010119)	-166.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	358.11	254.35	207.19	375.82	241.18	213.81	256.65	310.84	147.39
Merged-chr2-130728237-3	chr2	130727736	130728736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-30717.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	54.35	44.7	36.07	145.06	90.97	86.81	47.53	38.47	23.73
Merged-chr2-75696638-3	chr2	75696142	75697142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	8021.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	60.07	62.21	56.42	49.25	45.25	62.7	44.36	50.41	62.45
Merged-chr16-36931007-3	chr16	36930507	36931507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030035, intron 20 of 21)	intron (NM_030035, intron 20 of 21)	-3976.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	136.72	158.97	114.69	132.24	97.5	105.3	161.6	141.05	129.9
Merged-chr10-8886138-3	chr10	8885690	8886690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175155)	promoter-TSS (NM_175155)	-120.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	446.2	377.84	267.31	466.9	405.4	347.24	399.24	367.0	195.48
Merged-chr17-33999659-3	chr17	33999165	34000165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001892, intron 2 of 7)	CpG-6270	668.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	362.68	246.52	132.27	265.84	180.07	146.29	283.06	309.07	167.37
Merged-chr2-161109177-3	chr2	161108676	161109676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-90.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	48.62	43.77	60.12	66.12	41.99	62.7	64.43	34.93	27.48
Merged-chr2-52424919-3	chr2	52424425	52425425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-51.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	129.86	129.02	155.39	113.35	102.17	112.53	184.83	138.4	99.3
Merged-chr4-152153965-3	chr4	152153474	152154474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1767.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	37.76	47.92	34.22	44.53	34.52	35.37	38.02	29.18	28.1
Merged-chr3-108562458-3	chr3	108561957	108562957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	9.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	271.15	283.38	178.52	221.31	190.34	148.7	234.47	249.82	132.4
Merged-chr3-148336321-3	chr3	148335815	148336815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	618320.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	13.16	7.83	16.65	26.31	7.46	9.65	13.73	9.73	4.37
Merged-chr11-97884196-3	chr11	97883673	97884673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081435)	promoter-TSS (NM_001081435)	-19.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	42.33	51.61	86.95	49.93	43.39	74.75	82.38	90.2	54.33
Merged-chr12-76319087-3	chr12	76318570	76319570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 27 of 27)	HAL1|LINE|L1	-5821.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	114.98	120.26	74.92	64.77	70.44	81.99	107.73	107.0	69.32
Merged-chr1-194879801-3	chr1	194879296	194880296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57795.0	NR_039539	100628615.0		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	85.81	93.54	55.5	101.21	96.57	77.16	96.11	116.29	44.97
Merged-chr12-110992356-3	chr12	110991851	110992851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2047.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	28.03	22.12	31.45	33.74	22.39	25.72	34.85	29.18	16.24
Merged-chr4-132345677-3	chr4	132345154	132346154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197082)	promoter-TSS (NM_001197082)	96.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	76.66	52.99	44.4	107.28	59.25	46.62	107.73	86.66	31.85
Merged-chr11-52231994-3	chr11	52231477	52232477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011543)	promoter-TSS (NM_011543)	-18.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	370.12	368.17	266.39	327.24	368.54	303.03	287.28	284.76	172.99
Merged-chr3-116649078-3	chr3	116648580	116649580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13597.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	82.95	103.68	64.75	68.15	82.11	93.24	80.27	87.11	61.83
Merged-chr19-43930651-3	chr19	43930121	43931121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9577.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	48.05	59.9	29.6	80.97	109.16	65.11	28.52	25.2	22.48
Merged-chr12-85345708-3	chr12	85345204	85346204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-6342.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	252.28	268.18	197.02	261.12	213.19	190.5	266.16	417.85	154.88
Merged-chr7-4659111-3	chr7	4658643	4659643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172894)	promoter-TSS (NM_172894)	-193.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	244.27	267.72	215.51	191.62	188.0	181.66	214.41	217.1	157.38
Merged-chr1-191098385-3	chr1	191097877	191098877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030060)	promoter-TSS (NM_030060)	-37.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	193.93	138.24	208.11	197.02	156.28	172.81	160.54	141.49	104.92
Merged-chr11-60776846-3	chr11	60776337	60777337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175491)	promoter-TSS (NM_175491)	528.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	270.01	330.84	275.64	327.24	391.87	297.4	347.48	508.93	244.81
Merged-chr9-120011263-3	chr9	120010768	120011768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12330.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	99.54	79.25	62.9	80.97	69.04	90.83	42.25	19.9	19.98
Merged-chr3-58508537-3	chr3	58508042	58509042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-17279.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	33.75	35.94	14.8	32.39	22.39	40.19	38.02	27.86	29.35
Merged-chr18-31804091-3	chr18	31803609	31804609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170966)	promoter-TSS (NM_001170966)	52.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	197.36	212.88	121.17	187.57	268.24	165.58	152.09	152.11	89.93
Merged-chr13-107954471-3	chr13	107953966	107954966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64402.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	43.48	53.45	62.9	53.3	45.25	70.73	78.16	71.19	54.33
Merged-chr2-69135751-3	chr2	69135254	69136254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181547)	promoter-TSS (NM_181547)	-46.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	8.58	4.61	3.7	8.77	7.0	11.25	7.39	3.98	11.87
Merged-chr17-71552003-3	chr17	71551494	71552494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142631)	promoter-TSS (NM_001142631)	-67.0	NM_001142631	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	11.44	11.06	22.2	31.04	18.19	34.56	24.29	14.15	2.5
Merged-chr7-5062217-3	chr7	5061734	5062734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	91.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	549.17	470.0	412.53	462.18	476.31	384.21	484.79	527.06	336.62
Merged-chr14-73180848-3	chr14	73180357	73181357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	25994.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	18.88	19.35	22.2	32.39	16.79	40.19	16.9	16.8	13.12
Merged-chr15-59082141-3	chr15	59081642	59082642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146180)	promoter-TSS (NM_001146180)	-116.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	49.77	38.25	13.87	56.0	68.58	41.8	40.14	44.66	14.36
Merged-chr16-3744471-2	chr16	3743970	3744970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_148924, exon 1 of 6)	exon (NM_148924, exon 1 of 6)	371.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	287.74	441.89	252.51	352.88	437.58	338.39	385.51	459.85	236.07
Merged-chr4-41723227-3	chr4	41722733	41723733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016890)	promoter-TSS (NM_016890)	-70.0	NM_016890	53598.0	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	45.19	66.35	18.5	45.21	40.59	35.37	42.25	30.95	19.98
Merged-chr19-6996157-3	chr19	6995656	6996656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	25.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	28.6	29.49	35.15	31.71	21.46	26.53	33.8	30.51	11.87
Merged-chr7-99134084-3	chr7	99133584	99134584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	7060.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	131.0	138.24	93.42	102.56	104.5	93.24	95.06	119.83	79.32
Merged-chr4-10874544-3	chr4	10874066	10875066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	68.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	180.77	182.01	117.47	186.9	150.68	166.38	172.16	131.77	117.41
Merged-chr19-37376300-3	chr19	37375820	37376820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010615)	promoter-TSS (NM_010615)	-83.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	182.49	195.37	144.29	136.29	152.55	143.88	376.0	382.47	183.61
Merged-chr15-37972007-3	chr15	37971496	37972496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-10941.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	173.9	214.73	110.07	173.4	187.54	122.18	191.17	310.4	86.81
Merged-chr12-71831001-3	chr12	71830514	71831514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172464)	promoter-TSS (NM_172464)	-54.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	86.38	86.63	59.2	78.94	91.44	48.23	106.67	109.22	38.1
Merged-chr15-25828654-3	chr15	25828129	25829129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14669.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	48.05	45.16	27.75	76.92	47.12	51.44	85.55	53.5	22.48
Merged-chrUn_JH584304-22491-1	chrUn_JH584304	21991	22991	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37198.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	50.7	37.58	0.0
Merged-chr6-29467685-3	chr6	29467183	29468183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025381)	promoter-TSS (NM_025381)	-100.0	NM_025381	66144.0	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	128.71	107.36	61.05	141.69	136.69	118.16	125.69	149.89	85.56
Merged-chr8-25017126-3	chr8	25016630	25017630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007404)	promoter-TSS (NM_007404)	-81.0	NM_027194	69742.0	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	288.89	307.8	211.81	260.44	262.64	182.46	258.77	294.48	161.13
Merged-chr2-132266339-3	chr2	132265848	132266848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	3200.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	70.93	72.8	48.1	70.17	76.51	74.75	85.55	102.14	81.81
Merged-chr1-190911745-3	chr1	190911253	190912253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178775)	promoter-TSS (NM_178775)	17.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	93.82	62.67	75.85	93.79	85.37	88.42	57.03	53.5	49.34
Merged-chr5-76588704-3	chr5	76588185	76589185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3029.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	88.1	69.58	62.9	67.47	29.86	38.58	66.54	35.37	43.72
Merged-chr1-183635264-1	chr1	183634764	183635764	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113713.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	2.29	3.23	1.85	2.02	5.6	8.04	101.39	100.37	56.21
Merged-chr1-131146514-3	chr1	131146013	131147013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-6694.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	8.58	12.44	1.85	6.75	3.27	1.61	3.17	1.77	3.75
Merged-chr7-83631927-3	chr7	83631425	83632425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023377)	promoter-TSS (NM_023377)	-92.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	100.68	102.29	96.2	91.76	114.29	140.66	122.52	147.24	84.94
Merged-chr11-96916642-3	chr11	96916145	96917145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-131.0	NM_030248	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	207.66	174.64	124.87	163.96	112.43	101.28	145.75	154.32	68.7
Merged-chr3-95888866-3	chr3	95888364	95889364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346514, exon 3 of 6)	exon (NM_001346514, exon 3 of 6)	3141.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	36.61	26.26	14.8	26.31	23.33	40.99	32.74	33.6	22.48
Merged-chr9-21426242-3	chr9	21425738	21426738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	1330.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	49.77	55.75	49.95	39.13	35.45	42.6	39.08	54.83	38.72
Merged-chr13-24761987-3	chr13	24761485	24762485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020567)	promoter-TSS (NM_020567)	-48.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	127.0	150.68	148.92	128.2	95.17	135.84	119.35	156.53	83.69
Merged-chr8-61606988-3	chr8	61606502	61607502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	(CA)n|Simple_repeat|Simple_repeat	-15833.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	89.81	85.71	87.87	84.34	62.51	73.14	88.72	72.52	74.32
Merged-chr6-83636596-3	chr6	83636093	83637093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19523.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	121.28	131.32	121.17	138.32	139.49	125.39	167.93	182.17	103.67
Merged-chr6-54972520-3	chr6	54972000	54973000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	112.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	118.42	177.4	132.27	126.85	143.68	99.67	148.92	142.82	105.55
Merged-chr9-66114520-3	chr9	66114000	66115000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10386.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	56.63	60.82	56.42	49.25	52.72	60.28	53.87	46.87	39.35
Merged-chr11-98358366-3	chr11	98357868	98358868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021547)	promoter-TSS (NM_021547)	0.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	147.02	130.4	150.77	145.74	128.29	151.92	195.39	167.14	101.8
Merged-chr11-100626793-3	chr11	100626292	100627292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028024, exon 4 of 4)	3' UTR (NM_028024, exon 4 of 4)	3837.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	204.8	147.45	135.97	134.27	75.11	123.78	174.27	182.62	112.42
Merged-chr13-35906125-3	chr13	35905675	35906675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145938, intron 1 of 7)	CpG	172.0	NM_145938	208366.0	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	37.76	45.16	58.27	67.47	52.25	65.91	51.75	41.12	33.72
Merged-chr4-136148709-4	chr4	136148204	136149204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4882.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	71.51	35.02	31.45	92.44	45.25	33.76	79.21	44.66	34.35
Merged-chr14-31402201-3	chr14	31401713	31402713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	L1M3|LINE|L1	15464.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	165.32	176.48	118.39	230.08	181.01	172.01	174.27	170.23	109.92
Merged-chr7-142061030-3	chr7	142060543	142061543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028308)	promoter-TSS (NM_028308)	-9.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	173.9	135.47	147.07	178.8	122.23	141.47	144.7	89.32	75.57
Merged-chr16-93084513-3	chr16	93084026	93085026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258452.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	58.35	41.93	29.6	35.76	24.72	12.86	30.63	34.05	18.74
Merged-chr10-20312003-1	chr10	20311503	20312503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-466.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	372.41	493.5	292.29	332.64	434.32	313.48	353.82	495.67	252.93
Merged-chr17-28691262-3	chr17	28690776	28691776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011951)	promoter-TSS (NM_011951)	-66.0	NM_001168508	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	85.24	50.23	62.9	90.41	47.12	83.59	64.43	47.75	44.34
Merged-chr14-77034723-3	chr14	77034233	77035233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172488, intron 3 of 7)	intron (NM_172488, intron 3 of 7)	1884.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	128.71	152.52	91.57	122.8	95.63	82.79	166.88	221.53	133.02
Merged-chr8-25994155-3	chr8	25993645	25994645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029037)	promoter-TSS (NM_029037)	-24.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	118.42	140.08	143.37	167.33	178.21	147.09	177.44	165.81	89.31
Merged-chr1-7088899-3	chr1	7088428	7089428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	8.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	283.74	289.37	214.59	240.87	264.04	184.87	214.41	270.61	118.04
Merged-chr1-165618525-3	chr1	165618027	165619027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	16014.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	88.1	90.77	58.27	133.59	100.3	136.64	66.54	118.06	50.59
Merged-chr7-16924153-3	chr7	16923665	16924665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-133.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	256.85	220.25	110.99	259.77	237.45	217.02	247.15	218.87	104.3
Merged-chr11-106273041-3	chr11	106272538	106273538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	-66.0	NM_001130187	83796.0	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	129.28	94.0	123.94	107.28	85.37	94.04	132.02	99.05	68.07
Merged-chr8-120363953-3	chr8	120363456	120364456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-124910.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	129.86	99.53	88.8	138.32	117.56	86.01	137.3	108.33	44.97
Merged-chr6-134021011-3	chr6	134020503	134021503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14697.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.58	8.75	4.62	17.54	8.4	3.22	8.45	8.4	9.99
Merged-chr8-18616267-1	chr8	18615767	18616767	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173189, intron 3 of 13)	intron (NM_173189, intron 3 of 13)	21136.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	2.29	2.76	0.0	2.7	2.33	1.61	3.17	2.21	3.75
Merged-chr6-72389683-3	chr6	72389197	72390197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016794, intron 1 of 2)	intron (NM_016794, intron 1 of 2)	970.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	258.0	293.52	215.51	240.87	244.45	198.54	265.1	260.88	187.98
Merged-chr6-87511146-3	chr6	87510642	87511642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-14815.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	121.85	126.72	91.57	134.94	94.7	94.85	125.69	101.26	83.69
Merged-chr3-65975530-3	chr3	65975031	65976031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17282.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	216.24	305.04	128.57	170.03	290.17	200.95	194.34	308.63	165.5
Merged-chr4-47011162-3	chr4	47010654	47011654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19440.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	28.03	42.39	28.67	29.01	30.32	24.92	12.67	13.71	11.24
Merged-chr1-97676370-3	chr1	97675873	97676873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-14355.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	24.03	26.73	16.65	22.27	23.79	28.13	19.01	20.34	14.36
Merged-chr6-31123097-3	chr6	31122583	31123583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	-59990.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	131.0	100.45	64.75	145.74	88.17	127.0	178.5	155.2	68.07
Merged-chr7-5061403-5	chr7	5060890	5061890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133671)	promoter-TSS (NM_133671)	-753.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	315.77	268.18	258.06	246.95	244.45	245.96	265.1	322.78	205.47
Merged-chr2-144009244-3	chr2	144008740	144009740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	2023.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	121.85	96.3	64.75	95.81	52.72	70.73	114.07	95.95	50.59
Merged-chr7-24134166-3	chr7	24133661	24134661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153441, exon 2 of 4)	non-coding (NR_153441, exon 2 of 4)	1789.0	NR_153441	56525.0	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	10.87	23.04	12.95	24.96	20.06	29.74	24.29	16.8	26.85
Merged-chr4-129619112-3	chr4	129618621	129619621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198026)	promoter-TSS (NM_198026)	-28.0	NM_198026	230767.0	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	106.97	104.6	102.67	82.32	72.31	86.81	121.46	134.86	97.43
Merged-chr18-73816619-3	chr18	73816117	73817117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1225.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	112.69	69.58	80.47	109.98	75.57	77.16	166.88	110.98	65.58
Merged-chr1-58761574-3	chr1	58761088	58762088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31036.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	50.34	24.42	20.35	46.56	16.33	52.25	20.07	10.17	16.86
Merged-chr1-135534917-3	chr1	135534414	135535414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	50441.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	112.69	111.51	98.97	110.65	101.23	86.01	83.44	78.71	74.94
Merged-chr14-21813422-3	chr14	21812923	21813923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18138.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	97.25	47.0	56.42	75.57	29.39	38.58	109.84	84.45	39.35
Merged-chr2-103073609-3	chr2	103073123	103074123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019735)	promoter-TSS (NM_019735)	-52.0	NM_001355474	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	136.72	130.4	121.17	155.86	121.76	147.9	123.57	110.54	82.44
Merged-chr7-4149916-3	chr7	4149431	4150431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175529)	promoter-TSS (NM_175529)	-59.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	538.87	633.12	400.5	443.29	588.27	349.65	406.63	525.29	286.03
Merged-chr4-107889996-4	chr4	107889505	107890505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028754, exon 1 of 7)	exon (NM_028754, exon 1 of 7)	106.0	NM_028754	74098.0	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	56.63	34.56	70.3	55.33	39.19	73.14	82.38	53.5	33.72
Merged-chrX-166661966-3	chrX	166661423	166662423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-102.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	65.79	66.35	41.62	69.5	51.78	50.64	46.47	74.73	36.85
Merged-chr7-80032965-3	chr7	80032467	80033467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	6739.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	277.45	206.89	145.22	220.63	134.35	116.55	247.15	262.21	104.92
Merged-chr7-101537767-3	chr7	101537249	101538249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18053.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	169.9	157.13	107.29	155.86	126.42	112.53	103.51	145.03	87.43
Merged-chr19-3325534-3	chr19	3325024	3326024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	CpG	2223.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	133.29	141.0	153.54	149.79	183.34	139.06	135.19	130.44	103.67
Merged-chr17-71300081-3	chr17	71299571	71300571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10940.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	161.32	104.14	97.12	140.34	72.31	122.18	84.49	91.53	84.31
Merged-chr9-80165021-3	chr9	80164513	80165513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039546)	promoter-TSS (NM_001039546)	-21.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	35.47	13.82	27.75	47.9	15.86	24.92	52.81	28.3	23.73
Merged-chr5-73256788-3	chr5	73256273	73257273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-155.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	53.2	44.24	51.8	45.88	51.78	88.42	70.76	66.33	41.22
Merged-chr7-123322579-3	chr7	123322042	123323042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 4 of 19)	intron (NM_001316713, intron 4 of 19)	47373.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	166.47	117.04	92.5	150.46	118.96	112.53	136.25	137.51	86.18
Merged-chr14-55578442-3	chr14	55577899	55578899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-95.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	148.73	155.75	166.49	113.35	123.62	143.88	157.37	179.08	105.55
Merged-chr12-41196604-3	chr12	41196113	41197113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172523.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	61.21	83.86	29.6	64.1	47.58	53.05	74.99	93.74	34.35
Merged-chr10-88379160-3	chr10	88378701	88379701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004164)	promoter-TSS (NM_001004164)	-211.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	43.48	22.58	24.97	49.93	26.12	50.64	52.81	22.11	28.73
Merged-chr17-29093733-3	chr17	29093244	29094244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007669)	promoter-TSS (NM_007669)	-25.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	57.21	27.19	36.07	37.11	19.59	26.53	27.46	12.38	18.11
Merged-chr19-29367385-3	chr19	29366902	29367902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021893)	promoter-TSS (NM_021893)	-36.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	280.88	301.35	192.39	303.62	235.59	210.59	336.92	439.07	201.1
Merged-chr16-36531301-3	chr16	36530811	36531811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30823.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	38.9	21.66	23.12	63.42	39.19	28.13	29.57	28.3	28.1
Merged-chr4-93511031-3	chr4	93510526	93511526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175515.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	9.72	6.45	3.7	9.45	5.6	8.04	2.11	3.98	11.24
Merged-chr13-107057252-3	chr13	107056755	107057755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34685.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	18.88	19.81	5.55	9.45	5.13	4.82	17.96	25.2	11.87
Merged-chr6-84020205-3	chr6	84019709	84020709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	823.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	82.38	68.66	51.8	69.5	55.98	63.5	77.1	77.82	31.23
Merged-chr1-184729436-3	chr1	184728928	184729928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008250, intron 3 of 3)	intron (NM_008250, intron 3 of 3)	3065.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	188.21	134.09	101.74	162.61	103.56	157.54	167.93	145.03	104.92
Merged-chr19-24961761-3	chr19	24961242	24962242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-126.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	96.68	81.1	61.97	62.07	71.38	46.62	86.61	84.9	42.47
Merged-chr10-81233173-3	chr10	81232675	81233675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034895)	promoter-TSS (NM_001034895)	12.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	146.45	85.25	93.42	149.11	79.77	51.44	104.56	55.71	38.1
Merged-chr11-63046574-3	chr11	63046061	63047061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	423.89	446.04	262.69	409.55	432.45	282.93	431.98	507.61	182.36
Merged-chr13-52602250-3	chr13	52601729	52602729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	Tigger17a|DNA|TcMar-Tigger	5347.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	154.45	105.98	121.17	204.44	143.22	153.52	129.91	120.71	75.57
Merged-chr13-99344707-3	chr13	99344197	99345197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026873)	promoter-TSS (NM_026873)	-19.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	68.07	72.34	56.42	112.68	101.23	84.4	83.44	99.49	36.85
Merged-chr6-136553957-3	chr6	136553454	136554454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	35103.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	63.5	83.4	29.6	68.82	83.51	62.7	78.16	160.95	44.34
Merged-chr3-137953000-3	chr3	137952505	137953505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	28544.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	131.0	99.53	81.4	156.53	68.11	114.94	139.42	124.69	79.32
Merged-chr8-126832737-3	chr8	126832238	126833238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16282.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	473.66	320.71	239.56	435.87	283.17	325.53	397.13	491.69	166.75
Merged-chr8-34108485-3	chr8	34107928	34108928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293758)	promoter-TSS (NM_001293758)	284.0	NM_001293759	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	58.92	82.48	72.15	72.19	76.04	80.38	83.44	84.45	51.21
Merged-chr12-102456637-3	chr12	102456136	102457136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-12498.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	143.01	133.17	102.67	195.67	138.55	141.47	155.26	217.99	109.92
Merged-chr7-27231818-3	chr7	27231321	27232321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-1192.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	13.16	13.36	3.7	10.8	12.6	11.25	17.96	12.82	11.24
Merged-chr7-25221391-3	chr7	25220888	25221888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175436)	promoter-TSS (NM_175436)	-37.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	135.0	133.17	113.77	155.19	144.15	101.28	177.44	175.1	59.95
Merged-chr6-92943567-1	chr6	92943067	92944067	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	CpG	2985.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.15	2.3	9.25	22.94	18.66	28.13	0.0	0.44	1.25
Merged-chr9-102615288-1	chr9	102614788	102615788	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301689, exon 6 of 15)	exon (NM_001301689, exon 6 of 15)	10836.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	6.29	6.45	0.0	1.35	4.67	1.61	12.67	15.92	11.87
Merged-chr10-96163504-3	chr10	96162990	96163990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62717.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	59.49	70.96	65.67	51.95	66.71	68.32	74.99	146.8	97.43
Merged-chr12-86894619-3	chr12	86894118	86895118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9804.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	90.96	115.2	58.27	118.08	97.5	89.22	142.59	147.24	79.32
Merged-chr8-36251670-3	chr8	36251183	36252183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2167.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	164.18	175.1	75.85	134.27	130.16	120.57	63.37	49.52	39.35
Merged-chr8-108886855-3	chr8	108886345	108887345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-50015.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	54.35	47.0	14.8	58.7	45.72	34.56	59.15	63.67	26.23
Merged-chr1-144003437-3	chr1	144002929	144003929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 1 of 4)	intron (NM_009061, intron 1 of 4)	720.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	158.46	150.68	98.97	155.19	95.17	100.47	156.32	133.98	108.04
Merged-chr5-24451769-3	chr5	24451259	24452259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139153)	promoter-TSS (NM_139153)	-418.0	NM_001359881	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	251.7	177.4	238.64	246.27	219.73	179.24	226.02	175.98	125.53
Merged-chr19-29361885-3	chr19	29361389	29362389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026362)	promoter-TSS (NM_026362)	-18.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	93.24	103.68	59.2	113.35	117.56	89.22	143.64	126.02	63.08
Merged-chr19-34570194-3	chr19	34569664	34570664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	-13365.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	102.4	72.8	86.95	104.58	60.65	56.27	147.87	116.73	56.21
Merged-chr1-172195345-1	chr1	172194845	172195845	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151641, exon 14 of 14)	non-coding (NR_151641, exon 14 of 14)	11459.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	14.3	11.06	25.9	11.47	6.53	19.29	36.97	24.76	39.35
Merged-chr2-119289279-3	chr2	119288783	119289783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172269, intron 1 of 4)	intron (NM_172269, intron 1 of 4)	541.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	462.22	506.4	278.41	427.77	487.5	325.53	402.41	696.86	249.81
Merged-chr13-88821808-3	chr13	88821312	88822312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010103, exon 1 of 10)	5' UTR (NM_010103, exon 1 of 10)	340.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	44.62	42.85	63.82	8.1	4.2	3.22	30.63	9.73	8.12
Merged-chr7-141447656-3	chr7	141447158	141448158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	7.0	NM_001360658	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	219.67	241.91	151.69	194.99	201.53	148.7	242.92	245.4	125.53
Merged-chr3-129831428-3	chr3	129830935	129831935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026578)	promoter-TSS (NM_026578)	-39.0	NM_026578	68147.0	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	128.14	92.16	80.47	89.74	86.77	65.91	118.29	75.61	48.09
Merged-chr17-34836594-1	chr17	34836094	34837094	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	309.0	NM_019442	54402.0	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	112.69	84.32	86.02	75.57	57.38	72.34	89.78	122.48	53.08
Merged-chr2-32381985-3	chr2	32381480	32382480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-65.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	17.16	8.29	10.17	21.59	8.86	20.09	11.62	12.82	7.49
Merged-chr1-59763384-5	chr1	59762872	59763872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-907.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	127.0	147.45	93.42	161.26	141.82	159.15	138.36	125.13	99.3
Merged-chr18-80196339-3	chr18	80195841	80196841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199197, intron 3 of 5)	Charlie1a|DNA|hAT-Charlie	4278.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	105.26	144.23	116.54	131.57	104.5	169.6	143.64	155.2	106.17
Merged-chr4-87683034-3	chr4	87682532	87683532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	123291.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	11.44	14.75	6.47	13.49	7.93	8.84	8.45	11.05	9.37
Merged-chr11-69632786-3	chr11	69632295	69633295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	-176.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	217.38	95.38	92.5	215.91	71.38	131.82	207.01	105.68	56.21
Merged-chr17-32284780-3	chr17	32284283	32285283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-650.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	500.55	315.18	307.08	358.95	203.4	209.79	323.19	176.42	177.37
Merged-chr2-167225138-3	chr2	167224634	167225634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 3 of 9)	MTC|LTR|ERVL-MaLR	15403.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	152.17	145.61	123.94	165.98	138.09	167.19	177.44	192.78	114.91
Merged-chr6-92988743-1	chr6	92988243	92989243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48161.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	22.88	16.59	5.55	97.16	89.1	58.68	5.28	2.65	1.25
Merged-chr3-130900324-3	chr3	130899840	130900840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169942.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	33.18	38.25	8.32	24.96	27.06	28.94	23.24	25.2	17.49
Merged-chr11-40733545-3	chr11	40733030	40734030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013552)	promoter-TSS (NM_013552)	-93.0	NM_013552	15366.0	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	46.34	66.35	31.45	52.63	54.11	52.25	79.21	84.9	47.46
Merged-chr18-36709020-3	chr18	36708501	36709501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-13076.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	37.18	38.71	3.7	43.18	41.99	45.01	12.67	24.76	19.36
Merged-chr15-10486011-3	chr15	10485527	10486527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	9.0	NM_011232	19355.0	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	366.11	343.74	160.94	217.26	230.92	160.76	211.24	194.11	88.68
Merged-chr4-40244288-3	chr4	40243771	40244771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57E2|LTR|ERV1	-4446.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	45.76	73.73	35.15	32.39	43.39	45.82	50.7	68.09	41.22
Merged-chr9-51008614-3	chr9	51008120	51009120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 1 of 15)	CpG	453.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	362.11	312.41	267.31	274.61	265.44	200.14	267.21	217.1	191.73
Merged-chr2-152294002-3	chr2	152293526	152294526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024196, exon 1 of 8)	exon (NM_024196, exon 1 of 8)	154.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	282.59	241.45	193.32	281.36	231.39	157.54	295.73	252.48	107.42
Merged-chr2-117019333-3	chr2	117018838	117019838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101733.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	148.16	123.95	98.97	129.55	115.23	139.06	139.42	190.57	98.05
Merged-chr1-153803720-3	chr1	153803200	153804200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	40441.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	239.12	169.11	98.97	205.11	132.02	86.01	120.41	82.24	50.59
Merged-chr12-110608988-3	chr12	110608497	110609497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	intron (NM_030238, intron 1 of 76)	7602.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	37.18	41.47	28.67	63.42	37.32	49.03	47.53	41.12	33.1
Merged-chr11-86671260-3	chr11	86670769	86671769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	6.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	310.05	223.48	123.94	298.23	161.88	152.72	275.66	349.31	180.49
Merged-chr10-85183863-3	chr10	85183378	85184378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	1176.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	38.9	32.72	12.02	34.41	27.99	19.29	42.25	15.03	13.12
Merged-chr7-105752211-3	chr7	105751717	105752717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009906)	promoter-TSS (NM_009906)	18.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	194.5	224.4	150.77	224.68	286.9	150.31	242.92	246.29	107.42
Merged-chr3-108900377-3	chr3	108899867	108900867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10359.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	78.94	101.83	64.75	91.09	66.71	68.32	78.16	77.82	59.33
Merged-chr2-22895428-3	chr2	22894928	22895928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019501)	promoter-TSS (NM_019501)	-94.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	192.78	204.13	135.04	164.63	162.81	131.82	197.51	206.49	125.53
Merged-chr15-89128649-3	chr15	89128158	89129158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028449)	promoter-TSS (NR_028449)	42.0	NR_028448	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	86.38	86.63	86.95	82.99	88.64	98.87	80.27	90.2	56.83
Merged-chr6-81923700-3	chr6	81923210	81924210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177884)	promoter-TSS (NM_177884)	41.0	NM_177884	330361.0	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	27.46	17.97	12.95	34.41	20.99	20.9	25.35	14.15	11.24
Merged-chr2-18065343-5	chr2	18064834	18065834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010804, intron 2 of 22)	CpG-7762	749.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	231.11	182.01	152.62	204.44	186.6	127.8	170.05	163.6	133.65
Merged-chr5-88564904-3	chr5	88564411	88565411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289775)	promoter-TSS (NM_001289775)	-129.0	NM_001289774	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	249.42	228.55	206.26	245.6	183.34	192.91	260.88	188.81	163.0
Merged-chr5-92137816-3	chr5	92137311	92138311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019490)	promoter-TSS (NM_019490)	-86.0	NM_001359195	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	204.8	155.75	120.24	198.37	140.89	151.92	151.03	116.29	93.05
Merged-chr2-154656933-3	chr2	154656450	154657450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029362)	promoter-TSS (NM_029362)	-76.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	267.72	243.75	197.94	311.04	269.18	200.95	298.9	267.07	166.12
Merged-chr10-20770675-3	chr10	20770169	20771169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-45591.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	228.82	184.31	136.89	229.4	147.42	131.02	232.36	248.94	101.8
Merged-chr5-105053819-5	chr5	105053314	105054314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029509)	promoter-TSS (NM_029509)	-253.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	122.42	108.75	80.47	95.81	63.45	52.25	89.78	107.89	84.94
Merged-chr16-57389827-3	chr16	57389331	57390331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	36554.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	65.21	66.35	83.25	113.35	79.31	97.26	74.99	75.61	65.58
Merged-chr11-50026941-3	chr11	50026448	50027448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	1617.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	70.36	87.55	59.2	77.59	80.71	86.81	78.16	91.09	47.46
Merged-chr4-55351272-1	chr4	55350772	55351772	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	1230.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	128.14	100.91	43.47	110.65	122.23	40.99	209.12	257.78	59.33
Merged-chr12-91719289-3	chr12	91718797	91719797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	MTD|LTR|ERVL-MaLR	67139.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	234.54	198.14	133.19	186.22	138.09	153.52	154.2	198.09	114.91
Merged-chr6-114894005-3	chr6	114893510	114894510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	27811.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	271.73	249.28	162.79	269.89	275.71	196.12	269.33	299.35	111.17
Merged-chr3-97951305-3	chr3	97950782	97951782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	L1_Mur3|LINE|L1	21109.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	67.5	22.58	17.57	49.25	27.99	27.33	47.53	37.58	25.61
Merged-chr7-99043534-3	chr7	99043042	99044042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	97602.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	149.88	134.09	89.72	134.27	118.49	80.38	111.96	124.25	41.22
Merged-chr5-139404040-3	chr5	139403554	139404554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-2333.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	306.62	232.24	172.04	324.54	256.58	232.29	218.63	301.12	133.65
Merged-chr14-20733673-3	chr14	20733172	20734172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010811, intron 1 of 14)	intron (NM_010811, intron 1 of 14)	890.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	248.27	318.86	212.74	277.31	308.36	228.28	332.7	394.86	179.24
Merged-chr4-155624812-3	chr4	155624335	155625335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040441)	promoter-TSS (NR_040441)	-19.0	NM_001347308	12537.0	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	299.76	344.67	262.69	313.74	322.36	249.98	277.78	336.49	159.25
Merged-chr11-79140353-3	chr11	79139854	79140854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	6119.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	38.33	29.95	34.22	39.13	20.53	14.47	19.01	28.74	28.1
Merged-chr1-134518783-3	chr1	134518295	134519295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24135.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	1.72	2.76	0.0	8.1	3.27	3.22	3.17	2.65	1.25
Merged-chr17-5569292-3	chr17	5568792	5569792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	76692.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	283.17	228.09	141.52	337.36	272.44	171.21	241.87	315.71	131.15
Merged-chr12-38779509-3	chr12	38778995	38779995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-587.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	217.95	301.81	155.39	172.05	203.86	163.17	190.11	255.13	129.9
Merged-chr11-5522161-3	chr11	5521607	5522607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013842, intron 2 of 4)	intron (NM_013842, intron 2 of 4)	1466.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	221.38	246.98	85.1	252.34	180.07	147.9	156.32	173.77	116.79
Merged-chr2-103970111-3	chr2	103969629	103970629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-158.0	NM_008505	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	249.42	246.06	204.41	255.72	234.19	187.28	235.53	254.69	157.38
Merged-chr8-11636468-3	chr8	11635956	11636956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281975)	promoter-TSS (NM_001281975)	-699.0	NM_001281974	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	101.83	97.69	143.37	91.09	97.5	116.55	113.01	117.62	80.56
Merged-chr16-4722319-3	chr16	4721813	4722813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2957.0	NM_001290761	67824.0	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	127.57	141.92	85.1	118.08	93.3	143.07	164.76	198.09	135.52
Merged-chr11-95834525-3	chr11	95834016	95835016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7779.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	77.8	59.44	52.72	69.5	57.85	80.38	81.33	72.07	38.1
Merged-chr8-35716680-1	chr8	35716180	35717180	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109879.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	1.14	1.84	3.7	1.35	0.93	1.61	13.73	7.96	9.37
Merged-chr2-34772235-6	chr2	34771712	34772712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022310, exon 1 of 8)	5' UTR (NM_022310, exon 1 of 8)	122.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	274.59	168.65	191.47	260.44	153.48	168.8	198.56	219.31	154.26
Merged-chrX-159255295-3	chrX	159254788	159255788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148945)	promoter-TSS (NM_148945)	-494.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	62.35	54.83	36.07	89.74	66.24	73.95	82.38	63.67	59.95
Merged-chr8-13106122-1	chr8	13105622	13106622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178708)	promoter-TSS (NM_178708)	401.0	NM_146207	99375.0	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	138.44	109.21	125.79	98.51	101.23	114.14	119.35	78.71	45.59
Merged-chr1-131658189-3	chr1	131657703	131658703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	intron (NM_007799, intron 1 of 9)	19889.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	25.74	25.8	23.12	26.99	25.19	17.68	33.8	26.09	18.74
Merged-chr6-136658168-3	chr6	136657687	136658687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	3706.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	180.77	230.85	173.89	109.3	99.83	73.95	262.99	253.36	129.9
Merged-chr12-69683784-3	chr12	69683271	69684271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1919.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	34.32	35.48	37.92	24.96	28.46	22.51	34.85	41.12	29.35
Merged-chr4-141766584-3	chr4	141766095	141767095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172338, intron 12 of 14)	intron (NM_172338, intron 12 of 14)	19920.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	133.86	131.78	123.02	156.53	108.7	86.01	138.36	138.4	69.95
Merged-chr4-135876797-3	chr4	135876283	135877283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2937.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	429.61	310.57	168.34	354.9	251.91	189.69	302.07	323.67	143.64
Merged-chr5-92441671-3	chr5	92441170	92442170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-6471.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	90.96	98.61	57.35	107.28	62.98	84.4	138.36	161.39	68.07
Merged-chr2-73526890-3	chr2	73526380	73527380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	2607.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	42.33	32.72	51.8	42.51	33.59	39.39	30.63	41.12	36.22
Merged-chr8-105607994-3	chr8	105607472	105608472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	2743.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	46.34	35.94	38.85	31.71	17.73	37.78	24.29	15.92	29.98
Merged-chr12-84996289-3	chr12	84995801	84996801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178363)	promoter-TSS (NM_178363)	-20.0	NM_001347421	56531.0	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	79.52	73.26	21.27	51.28	66.24	58.68	85.55	46.87	36.85
Merged-chr3-27194122-3	chr3	27193602	27194602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	L3|LINE|CR1	11098.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	308.91	299.97	148.92	388.64	387.2	251.59	280.95	378.94	150.51
Merged-chr19-8518444-3	chr19	8517944	8518944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-72810.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	40.62	42.85	18.5	36.43	32.19	59.48	36.97	42.89	46.84
Merged-chr3-107084709-3	chr3	107084203	107085203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16864.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	10.87	14.28	12.95	18.22	20.53	17.68	25.35	15.03	26.23
Merged-chr4-43982560-3	chr4	43982041	43983041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002787)	promoter-TSS (NM_001002787)	-963.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	7.44	12.44	5.55	8.77	3.27	1.61	8.45	2.21	2.5
Merged-chr18-60752197-3	chr18	60751714	60752714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3549.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	109.26	103.68	52.72	199.72	197.33	148.7	127.8	126.02	51.84
Merged-chr7-102250738-3	chr7	102250221	102251221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019566)	promoter-TSS (NM_019566)	-603.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	239.69	228.55	131.34	212.54	186.6	214.61	220.74	233.91	129.9
Merged-chr11-120518281-3	chr11	120517794	120518794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12433.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	249.42	244.68	147.07	238.85	173.07	191.3	231.3	277.68	128.03
Merged-chr17-24528064-3	chr17	24527563	24528563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172114)	promoter-TSS (NM_001172114)	-125.0	NM_001172114	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	99.54	91.24	47.17	91.09	82.11	92.44	120.41	113.19	57.46
Merged-chr10-98815032-3	chr10	98814512	98815512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99630.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	15.45	17.97	3.7	20.92	15.86	3.22	15.84	17.24	10.62
Merged-chr10-128529067-4	chr10	128528584	128529584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3225.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	37.18	29.03	31.45	56.68	33.59	41.8	36.97	36.7	33.72
Merged-chr11-70970084-3	chr11	70969579	70970579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252413)	promoter-TSS (NM_001252413)	-106.0	NM_001276406	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	92.1	69.58	86.02	95.81	84.44	102.08	135.19	142.82	64.33
Merged-chr11-50325717-3	chr11	50325173	50326173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007597)	promoter-TSS (NM_007597)	0.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	453.07	410.56	283.04	437.89	394.67	281.33	384.45	383.8	218.58
Merged-chr4-36038966-3	chr4	36038464	36039464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-193760.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	7.44	5.99	1.85	11.47	7.0	11.25	9.51	13.71	6.25
Merged-chr2-167926247-3	chr2	167925756	167926756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-6071.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	229.39	229.47	191.47	247.62	187.07	250.78	252.43	287.41	163.0
Merged-chr7-16046180-3	chr7	16045659	16046659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25686.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	123.56	119.8	92.5	115.38	108.23	143.88	153.15	133.09	79.32
Merged-chr12-79140984-3	chr12	79140476	79141476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	10188.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	140.73	139.62	108.22	236.83	158.61	135.84	129.91	175.54	86.81
Merged-chr2-127208269-3	chr2	127207717	127208717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	63.0	NM_198630	329509.0	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	212.23	213.34	148.92	190.95	211.33	146.29	162.65	210.03	95.55
Merged-chr18-67724556-3	chr18	67723988	67724988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001127177, exon 1 of 9)	exon (NM_001127177, exon 1 of 9)	133.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	386.71	317.48	255.29	341.41	230.92	282.13	292.56	248.94	151.76
Merged-chr19-6128207-3	chr19	6127730	6128730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026912)	promoter-TSS (NM_026912)	-15.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	171.62	133.63	110.99	168.68	134.35	137.45	184.83	196.76	76.82
Merged-chr3-127768192-1	chr3	127767692	127768692	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	12335.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	14.87	20.74	13.87	14.84	8.4	10.45	5.28	3.98	11.24
Merged-chr11-79305839-3	chr11	79305328	79306328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34064.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	225.39	149.29	89.72	196.34	131.56	136.64	163.71	162.72	109.92
Merged-chr5-72270160-1	chr5	72269660	72270660	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 15 of 22)	intron (NR_003966, intron 15 of 22)	66817.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	15.45	13.36	3.7	20.92	7.0	15.27	19.01	7.52	6.87
Merged-chr18-49979361-3	chr18	49978873	49979873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-54.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	52.06	47.92	39.77	50.6	33.59	53.05	25.35	25.65	26.85
Merged-chr6-126940694-3	chr6	126940194	126941194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138594, intron 1 of 13)	Lx8|LINE|L1	728.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	88.1	150.68	56.42	82.99	77.91	102.88	142.59	157.85	88.06
Merged-chr16-32130352-3	chr16	32129873	32130873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30571.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	96.68	70.96	61.05	85.01	57.85	75.56	86.61	82.24	61.2
Merged-chr14-120279086-3	chr14	120278576	120279576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	3407.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	122.99	86.63	23.12	179.47	131.09	43.4	109.84	74.28	34.35
Merged-chr1-10039751-3	chr1	10039234	10040234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026493, intron 1 of 29)	GC_rich|Low_complexity|Low_complexity	1516.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	54.35	58.52	53.65	64.77	38.25	61.09	60.2	51.73	44.97
Merged-chr9-109074158-3	chr9	109073632	109074632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172774)	promoter-TSS (NM_172774)	-8.0	NM_172774	235610.0	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	178.48	200.9	172.04	171.38	153.01	165.58	214.41	185.71	121.78
Merged-chr2-154570011-3	chr2	154569505	154570505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291105)	promoter-TSS (NM_001291105)	-113.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	90.96	52.99	82.32	86.36	48.98	53.05	77.1	40.68	33.72
Merged-chr4-136143771-3	chr4	136143275	136144275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008321)	promoter-TSS (NM_008321)	-47.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	258.0	166.8	149.84	261.12	200.13	180.05	215.46	257.34	99.92
Merged-chr4-8647401-5	chr4	8646898	8647898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-43008.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	296.32	310.11	191.47	261.79	231.85	208.98	295.73	207.82	143.02
Merged-chr6-71981578-3	chr6	71981060	71982060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60968.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	26.31	7.37	7.4	25.64	15.39	18.49	28.52	15.92	9.99
Merged-chr7-43919991-3	chr7	43919513	43920513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13758.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	108.69	98.15	102.67	94.46	92.84	100.47	90.83	102.58	79.94
Merged-chr18-5688636-3	chr18	5688071	5689071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	MTD|LTR|ERVL-MaLR	95924.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	23.45	48.84	37.92	32.39	28.46	24.92	23.24	19.46	24.98
Merged-chr3-15850087-1	chr3	15849587	15850587	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1600.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	8.01	2.3	1.85	1.35	7.46	0.0	25.35	8.84	17.49
Merged-chr14-51083432-3	chr14	51082909	51083909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7668.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	275.16	269.56	190.54	246.95	259.38	137.45	143.64	112.31	36.85
Merged-chr1-43913420-3	chr1	43912922	43913922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20572.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	153.31	189.38	170.19	158.56	162.81	188.09	194.34	240.54	141.77
Merged-chr5-113643697-3	chr5	113643195	113644195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359060)	promoter-TSS (NM_001359060)	-92.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	139.01	84.78	104.52	159.91	80.24	92.44	159.48	101.26	76.19
Merged-chr17-29998572-3	chr17	29998051	29999051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6488.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	25.74	14.75	8.32	22.27	7.93	12.86	25.35	19.46	14.36
Merged-chr2-144247507-3	chr2	144247004	144248004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18698.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	56.63	44.7	37.92	44.53	33.59	55.46	46.47	36.26	14.99
Merged-chr16-33056445-3	chr16	33055968	33056968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	-14.0	NM_001130484	57808.0	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	90.38	106.9	66.6	89.06	79.77	71.54	92.94	85.78	60.58
Merged-chr16-8672209-3	chr16	8671696	8672696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025821)	promoter-TSS (NM_025821)	-43.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	28.6	35.02	29.6	52.63	41.05	54.66	58.09	41.12	37.47
Merged-chr12-80054503-3	chr12	80054013	80055013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58500.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	44.62	15.67	11.1	43.18	24.72	20.9	45.42	24.32	13.74
Merged-chr17-23700253-3	chr17	23699755	23700755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16229.0	NM_020293	56863.0	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	9.72	5.53	7.4	6.07	4.2	0.0	4.22	1.77	1.87
Merged-chr2-166412636-3	chr2	166412136	166413136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34815.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	10.87	3.23	9.25	11.47	8.4	7.23	8.45	1.33	3.12
Merged-chr3-135438238-3	chr3	135437756	135438756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025356)	promoter-TSS (NM_025356)	24.0	NM_001356594	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	294.61	222.56	199.79	281.36	167.94	173.62	232.36	214.01	104.3
Merged-chr15-86189274-3	chr15	86188763	86189763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3122.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	73.79	57.6	69.37	53.3	48.98	72.34	46.47	44.66	38.72
Merged-chr6-87535804-3	chr6	87535320	87536320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2561.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	313.49	239.15	167.42	311.72	198.73	184.07	220.74	265.74	132.4
Merged-chr16-13437267-3	chr16	13436774	13437774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12249.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	62.93	80.64	37.0	74.22	69.98	38.58	39.08	41.12	8.74
Merged-chr15-38710371-3	chr15	38709890	38710890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18126.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	56.63	55.29	35.15	71.52	62.05	99.67	91.89	64.11	29.98
Merged-chr7-105737402-3	chr7	105736905	105737905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025897)	promoter-TSS (NM_025897)	-20.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	122.42	128.56	128.57	101.88	102.17	110.92	120.41	137.07	121.16
Merged-chr4-22402273-1	chr4	22401773	22402773	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172988, intron 5 of 8)	ORR1B1|LTR|ERVL-MaLR	44730.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.57	4.61	5.55	6.07	1.87	4.02	3.17	3.54	3.12
Merged-chr18-5348986-3	chr18	5348500	5349500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14193.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	13.16	9.68	2.77	12.82	10.73	6.43	7.39	4.86	3.75
Merged-chr5-34535194-3	chr5	34534747	34535747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-8118.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	135.0	129.48	146.14	155.86	126.42	192.91	143.64	150.34	86.81
Merged-chr10-17772654-3	chr10	17772163	17773163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23556.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	26.89	34.56	27.75	46.56	50.85	48.23	86.61	89.32	69.95
Merged-chr16-57166812-2	chr16	57166319	57167319	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023175, intron 1 of 9)	intron (NM_023175, intron 1 of 9)	513.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	102.4	126.25	116.54	116.05	116.16	119.76	129.91	135.3	73.69
Merged-chr17-35232234-3	chr17	35231717	35232717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2793.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	86.38	45.16	46.25	53.98	28.92	39.39	29.57	45.54	24.98
Merged-chr11-17257583-3	chr11	17257041	17258041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330649)	promoter-TSS (NM_001330649)	-6.0	NM_020558	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	197.36	313.33	213.66	247.62	307.43	184.07	229.19	297.58	164.88
Merged-chr1-172456145-3	chr1	172455648	172456648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19212.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	64.07	58.06	39.77	85.01	69.04	82.79	120.41	130.88	88.68
Merged-chr2-26445935-3	chr2	26445420	26446420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153125)	promoter-TSS (NM_153125)	-4.0	NR_152209	100125929.0	Mm.392411	NR_152207		0610009E02Rik	-	RIKEN cDNA 0610009E02 gene	ncRNA	113.27	116.58	64.75	112.0	92.84	86.81	47.53	54.83	50.59
Merged-chr16-37580084-3	chr16	37579589	37580589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-64.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	37.76	39.17	49.02	20.92	20.53	26.53	50.7	61.02	29.98
Merged-chr11-84818841-3	chr11	84818331	84819331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145433, intron 1 of 4)	CpG	684.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	268.29	237.3	272.86	234.13	249.58	253.19	248.2	294.93	184.86
Merged-chr13-20784484-3	chr13	20783981	20784981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9632.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	47.48	44.7	47.17	60.05	32.19	28.13	41.19	30.51	27.48
Merged-chr4-88865364-3	chr4	88864863	88865863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14838.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	76.66	88.01	66.6	63.42	43.85	45.82	84.49	59.25	48.09
Merged-chr11-76588238-3	chr11	76587727	76588727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10488.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	357.53	343.28	240.49	403.48	352.21	266.05	311.57	389.55	169.25
Merged-chr14-45049851-3	chr14	45049316	45050316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61705.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	117.84	127.64	126.72	130.22	90.04	98.87	113.01	103.47	97.43
Merged-chr10-118141737-3	chr10	118141232	118142232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010785)	promoter-TSS (NM_010785)	-55.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	80.09	52.53	40.7	56.0	30.32	36.97	28.52	20.78	13.12
Merged-chrX-20392148-3	chrX	20391629	20392629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290643, intron 3 of 5)	intron (NM_001290643, intron 3 of 5)	27648.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	20.59	16.59	19.42	16.19	15.86	13.66	10.56	19.46	9.99
Merged-chr2-125866246-3	chr2	125865765	125866765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291002)	promoter-TSS (NM_001291002)	42.0	NM_001291002	69976.0	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	37.18	32.72	17.57	47.9	37.32	35.37	31.69	19.46	8.12
Merged-chr10-99268930-3	chr10	99268436	99269436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5705.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	84.09	68.66	58.27	69.5	51.78	57.07	70.76	59.69	70.57
Merged-chr7-133047475-3	chr7	133046984	133047984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-32237.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	80.09	106.9	68.45	109.3	74.64	81.18	130.97	134.42	67.45
Merged-chr4-123612146-3	chr4	123611647	123612647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-4273.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	101.83	114.27	81.4	103.23	80.24	70.73	137.3	162.72	98.68
Merged-chr11-55469456-3	chr11	55468982	55469982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013716)	promoter-TSS (NM_013716)	-270.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	232.83	191.69	111.92	261.79	157.68	153.52	181.66	160.06	84.94
Merged-chr4-115737702-3	chr4	115737209	115738209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172698)	promoter-TSS (NM_172698)	-364.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	88.67	110.13	59.2	101.21	100.3	86.81	104.56	115.41	45.59
Merged-chr3-79197213-3	chr3	79196709	79197709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15710.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	36.04	41.47	25.9	43.86	19.59	30.54	40.14	35.37	38.1
Merged-chr17-56269346-3	chr17	56268848	56269848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_174989)	TTS (NM_174989)	7419.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	216.24	229.47	150.77	224.68	217.86	192.11	230.25	307.31	161.75
Merged-chr3-59210930-3	chr3	59210409	59211409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-27.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	135.0	229.93	115.62	165.98	108.7	101.28	149.98	178.19	101.8
Merged-chr4-63745286-3	chr4	63744783	63745783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177371)	promoter-TSS (NM_177371)	-170.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	14.3	12.44	6.47	12.14	12.6	8.04	10.56	7.07	7.49
Merged-chr4-149173841-3	chr4	149173329	149174329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7124.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	58.92	41.93	62.9	75.57	46.18	71.54	54.92	65.0	65.58
Merged-chr11-45852660-3	chr11	45852150	45853150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	686.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	289.46	297.21	312.63	234.13	231.85	221.04	328.47	256.46	206.09
Merged-chr16-4939073-3	chr16	4938578	4939578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025839)	promoter-TSS (NM_025839)	-33.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	85.81	61.75	55.5	109.98	117.56	88.42	107.73	107.45	57.46
Merged-chr4-35225204-3	chr4	35224698	35225698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	682.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	439.91	411.94	256.21	406.18	340.55	243.55	371.78	420.5	222.96
Merged-chr16-87636018-3	chr16	87635529	87636529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62925.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	109.26	115.2	59.2	80.97	89.1	77.97	61.26	81.36	33.72
Merged-chr2-157367698-3	chr2	157367197	157368197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	CpG	103.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	394.14	360.79	314.48	352.88	364.81	345.63	389.73	416.08	281.04
Merged-chr5-113771699-4	chr5	113771229	113772229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151532, exon 1 of 17)	non-coding (NR_151532, exon 1 of 17)	671.0	NR_151532	53890.0	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	232.83	230.39	209.96	205.11	231.39	176.03	277.78	280.78	118.04
Merged-chr19-5795210-3	chr19	5794718	5795718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002847)	TTS (NR_002847)	763.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	72.08	48.84	22.2	58.03	19.59	36.17	16.9	29.18	18.11
Merged-chr12-9031005-3	chr12	9030508	9031508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029321, intron 1 of 2)	intron (NM_029321, intron 1 of 2)	1011.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	139.58	182.47	86.95	134.94	173.54	117.35	174.27	164.49	128.03
Merged-chr13-12256052-3	chr13	12255566	12256566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	2047.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	197.36	170.49	109.14	143.71	155.81	100.47	162.65	224.62	95.55
Merged-chr3-108722243-3	chr3	108721724	108722724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029522)	promoter-TSS (NM_029522)	75.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	18.31	11.98	10.17	18.22	14.93	9.65	21.12	14.15	14.99
Merged-chr5-115530080-3	chr5	115529526	115530526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23350.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	138.44	137.77	118.39	156.53	146.48	166.38	151.03	177.31	82.44
Merged-chr5-105723572-2	chr5	105723075	105724075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	22765.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	10.3	11.98	11.1	9.45	4.67	4.02	3.17	2.65	9.37
Merged-chr6-94507303-3	chr6	94506793	94507793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 1 of 9)	intron (NM_026255, intron 1 of 9)	6979.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	30.32	38.25	22.2	48.58	31.72	39.39	12.67	15.03	11.24
Merged-chr7-80860901-3	chr7	80860418	80861418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1190.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	53.77	68.66	62.9	65.45	56.91	54.66	83.44	76.49	43.09
Merged-chr7-3629863-3	chr7	3629286	3630286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027328)	promoter-TSS (NM_027328)	143.0	NM_023524	69714.0	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	69.22	94.92	105.44	76.24	97.5	105.3	105.62	80.47	63.7
Merged-chr11-60104960-3	chr11	60104465	60105465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009021)	promoter-TSS (NM_009021)	-48.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	139.01	69.12	76.77	126.85	48.98	85.2	114.07	58.37	57.46
Merged-chr17-28313422-3	chr17	28312874	28313874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163820)	promoter-TSS (NM_001163820)	-156.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	58.92	33.64	64.75	56.68	33.12	40.99	53.87	34.93	32.48
Merged-chr9-99499583-3	chr9	99499085	99500085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 15 of 21)	intron (NM_028768, intron 15 of 21)	29164.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	141.87	106.9	93.42	136.97	99.83	90.02	154.2	138.84	74.32
Merged-chr4-149104147-3	chr4	149103652	149104652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010044)	promoter-TSS (NM_010044)	10.0	NM_001025296	13347.0	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	22.31	21.66	6.47	18.22	14.46	18.49	24.29	11.05	7.49
Merged-chr7-63999839-3	chr7	63999336	64000336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60921.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	64.64	57.14	64.75	39.81	47.58	52.25	38.02	39.35	36.85
Merged-chr11-70654642-3	chr11	70654144	70655144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	6.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	127.0	107.82	124.87	109.98	81.64	143.88	120.41	136.63	124.91
Merged-chr11-19019006-3	chr11	19018514	19019514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-45.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	72.08	100.91	85.1	75.57	75.57	86.01	107.73	110.1	84.94
Merged-chr11-96830061-3	chr11	96829554	96830554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130450)	promoter-TSS (NM_001130450)	-86.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	221.38	215.65	208.11	147.76	110.56	184.07	172.16	160.06	104.92
Merged-chr10-125725596-3	chr10	125725093	125726093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240626.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	16.59	19.81	22.2	20.24	14.93	38.58	15.84	28.74	22.48
Merged-chr7-118798355-3	chr7	118797839	118798839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	RSINE1|SINE|B4	57274.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	195.07	218.87	138.74	194.99	185.2	122.18	156.32	173.33	111.79
Merged-chr2-153084398-3	chr2	153083904	153084904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18449.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	260.28	175.1	128.57	213.89	129.22	107.71	210.18	185.27	136.15
Merged-chr5-76304889-3	chr5	76304366	76305366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289826)	promoter-TSS (NM_001289826)	-10.0	NR_152171	665055.0	Mm.425276	NR_152171	ENSMUSG00000098449	Gm7467	EG665055	predicted gene 7467	ncRNA	182.49	150.22	184.99	199.72	172.61	175.23	197.51	124.69	94.93
Merged-chr7-97082449-3	chr7	97081940	97082940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	689.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	420.46	359.41	406.98	449.36	386.27	334.38	383.4	354.62	252.93
Merged-chr4-116626861-3	chr4	116626352	116627352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081475, intron 1 of 13)	CpG	645.0	NM_001081475	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	42.9	56.22	69.37	46.56	44.32	61.89	63.37	75.61	73.69
Merged-chr5-91962908-3	chr5	91962415	91963415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	33.0	NR_028429	381650.0	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	374.7	365.4	351.48	401.46	295.3	342.41	363.33	325.44	196.73
Merged-chr8-121829575-3	chr8	121829043	121830043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	26.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	62.35	67.74	47.17	59.38	63.91	57.07	91.89	66.77	34.35
Merged-chr7-30090500-3	chr7	30089993	30090993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	17.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	57.21	42.85	42.55	70.85	44.78	74.75	38.02	42.89	31.85
Merged-chr14-31669990-3	chr14	31669508	31670508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28951.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	34.32	15.67	12.95	26.31	26.59	43.4	10.56	12.38	6.25
Merged-chr8-13674476-3	chr8	13673980	13674980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	3107.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	135.58	143.3	123.02	181.5	125.96	149.5	143.64	183.06	119.28
Merged-chr5-130024379-3	chr5	130023883	130024883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133768)	promoter-TSS (NM_133768)	-2.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	207.66	205.51	135.97	210.51	188.0	167.99	163.71	192.78	103.67
Merged-chr3-20004721-3	chr3	20004224	20005224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 14 of 16)	intron (NM_080634, intron 14 of 16)	30586.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	58.35	66.81	34.22	62.07	49.92	35.37	51.75	57.04	39.97
Merged-chr2-165928024-3	chr2	165927531	165928531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-43193.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	133.29	106.44	85.1	122.12	82.57	102.88	54.92	28.3	8.74
Merged-chr2-32496342-3	chr2	32495842	32496842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39017.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	204.22	89.39	90.65	238.85	125.96	124.59	221.8	174.66	92.43
Merged-chr7-121983236-3	chr7	121982755	121983755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-1562.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	30.32	57.6	63.82	53.98	50.38	71.54	71.82	56.16	35.6
Merged-chr7-141009156-3	chr7	141008655	141009655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025378)	TTS (NM_025378)	1589.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	8.58	13.82	16.65	21.59	10.73	24.92	21.12	18.13	16.86
Merged-chr5-121500950-3	chr5	121500444	121501444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	2036.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	66.36	52.07	51.8	47.9	56.91	57.87	45.42	32.28	14.99
Merged-chr7-97749057-3	chr7	97748549	97749549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-10802.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	75.51	100.45	85.1	87.04	73.71	98.06	100.34	145.92	90.56
Merged-chr2-48814033-4	chr2	48813516	48814516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007396)	promoter-TSS (NM_007396)	-93.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	122.99	71.88	106.37	118.08	80.24	98.06	125.69	87.99	65.58
Merged-chr13-35740786-3	chr13	35740293	35741293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001123386)	promoter-TSS (NM_001123386)	-609.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	38.33	33.64	22.2	27.66	17.73	23.31	43.3	16.36	16.24
Merged-chrUn_JH584304-4600-1	chrUn_JH584304	4100	5100	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55089.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	48.58	34.49	0.0
Merged-chr4-66827616-3	chr4	66827115	66828115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021297)	promoter-TSS (NM_021297)	64.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	172.76	171.87	106.37	166.66	157.68	131.82	153.15	210.03	119.28
Merged-chr1-24678612-3	chr1	24678122	24679122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310483)	promoter-TSS (NM_001310483)	78.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	516.56	499.03	255.29	469.6	513.63	337.59	429.87	510.7	199.85
Merged-chr11-94210282-3	chr11	94209774	94210774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1180.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	172.76	161.27	97.12	153.84	185.67	202.55	130.97	115.85	81.19
Merged-chr18-5802494-3	chr18	5801997	5802997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	209850.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	82.38	64.51	65.67	87.71	48.52	105.3	63.37	48.64	83.06
Merged-chrX-167353842-3	chrX	167353358	167354358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313758, intron 4 of 6)	intron (NM_001313758, intron 4 of 6)	-23287.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	56.06	57.14	27.75	49.25	55.51	54.66	46.47	51.29	30.6
Merged-chr7-101538300-3	chr7	101537776	101538776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17526.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	216.24	178.78	144.29	186.9	142.29	139.06	133.08	170.23	91.18
Merged-chr7-29228360-3	chr7	29227865	29228865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	4157.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	68.65	69.58	100.82	81.64	48.98	94.04	99.28	99.05	87.43
Merged-chr4_GL456216_random-16498-1	chr4_GL456216_random	15998	16998	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 1 of 6)	CpG	617.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	679.13	710.12	0.0
Merged-chr2-168981122-3	chr2	168980639	168981639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2870.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	54.92	37.78	39.77	40.48	35.92	45.82	65.48	65.0	25.61
Merged-chr14-120363407-3	chr14	120362910	120363910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56958.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	37.18	35.48	43.47	89.74	58.31	78.77	85.55	69.42	41.22
Merged-chr16-21423569-1	chr16	21423069	21424069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285894, intron 1 of 45)	CpG	451.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	106.97	73.73	62.9	115.38	105.9	96.45	109.84	96.39	41.22
Merged-chr10-19907499-3	chr10	19907001	19908001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008822, exon 1 of 10)	exon (NM_008822, exon 1 of 10)	173.0	NM_008822	18634.0	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	288.32	200.44	189.62	228.73	153.95	146.29	227.08	148.13	109.29
Merged-chr16-14159485-3	chr16	14158986	14159986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030252)	promoter-TSS (NR_030252)	-140.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	131.57	175.1	159.09	151.81	202.46	191.3	200.68	236.56	118.66
Merged-chr9-107950937-3	chr9	107950437	107951437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011634)	promoter-TSS (NM_011634)	-26.0	NM_011634	22036.0	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	28.6	23.96	20.35	42.51	26.59	20.09	26.4	18.13	17.49
Merged-chr3-146657653-3	chr3	146657139	146658139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6322.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	98.39	88.47	56.42	109.3	93.3	94.04	66.54	90.2	66.2
Merged-chr7-44997657-3	chr7	44997140	44998140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	-8.0	NR_045611	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	105.83	139.62	165.57	84.34	101.23	128.61	124.63	142.82	91.18
Merged-chr1-58774129-3	chr1	58773633	58774633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21241.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	40.62	48.84	53.65	43.18	27.52	54.66	40.14	32.28	38.72
Merged-chr4-95557432-3	chr4	95556942	95557942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113412)	promoter-TSS (NM_001113412)	-65.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	13.73	9.68	15.72	8.1	4.67	8.04	34.85	47.75	16.24
Merged-chr11-83550519-3	chr11	83550018	83551018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEa|LINE|L1	-20000.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	79.52	66.35	38.85	64.1	38.72	47.42	64.43	60.13	55.58
Merged-chr12-3823841-3	chr12	3823367	3824367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	16707.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	96.11	98.15	42.55	109.3	84.44	61.89	138.36	148.13	41.84
Merged-chr2-23041605-3	chr2	23041120	23042120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-1379.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	53.2	50.69	41.62	57.35	52.72	81.99	64.43	71.63	69.95
Merged-chr2-70986967-2	chr2	70986465	70987465	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	(CA)n|Simple_repeat|Simple_repeat	31409.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	34.32	29.95	20.35	85.69	57.85	47.42	80.27	61.46	33.1
Merged-chr13-62760679-3	chr13	62760172	62761172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030493)	promoter-TSS (NR_030493)	-67.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	14.87	26.73	37.92	18.22	15.39	23.31	25.35	43.77	37.47
Merged-chr11-120040617-3	chr11	120040112	120041112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1169.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	147.02	179.71	86.02	244.92	268.71	207.38	148.92	221.08	76.82
Merged-chr17-53475758-1	chr17	53475258	53476258	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3476.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	21.74	9.68	11.1	22.27	8.4	25.72	12.67	15.03	2.5
Merged-chr9-47745809-2	chr9	47745322	47746322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	72386.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	36.04	41.93	45.32	47.9	54.11	67.52	7.39	8.84	3.75
Merged-chr6-82822080-3	chr6	82821582	82822582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47628.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	56.63	77.87	47.17	50.6	57.85	61.89	65.48	74.28	53.71
Merged-chr1-121462918-2	chr1	121462402	121463402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 10 of 23)	intron (NM_029955, intron 10 of 23)	31835.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	171.62	158.97	167.42	21.59	20.06	15.27	83.44	88.43	43.09
Merged-chr13-67399766-3	chr13	67399268	67400268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080941)	promoter-TSS (NM_001080941)	-1.0	NM_001080941	72807.0	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	81.8	77.41	37.92	82.99	61.58	63.5	114.07	91.97	69.95
Merged-chr7-25755103-6	chr7	25754603	25755603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360789)	promoter-TSS (NM_001360789)	-344.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	184.77	195.83	164.64	145.74	156.75	125.39	211.24	198.53	98.68
Merged-chr12-110696455-3	chr12	110695937	110696937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-42.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	302.62	219.79	197.02	324.54	287.37	200.95	227.08	206.49	153.63
Merged-chr13-23684788-3	chr13	23684273	23685273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178189)	promoter-TSS (NM_178189)	574.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	239.69	270.94	122.09	199.72	227.19	187.28	179.55	269.28	128.65
Merged-chr4-150799686-3	chr4	150799164	150800164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54132.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	50.34	52.99	27.75	89.74	81.17	73.14	61.26	46.43	32.48
Merged-chr12-12223541-3	chr12	12223047	12224047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38592.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	144.16	161.74	117.47	155.19	126.89	118.16	179.55	216.22	109.29
Merged-chr17-73107957-3	chr17	73107464	73108464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-21.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	358.68	368.63	218.29	265.16	265.91	189.69	270.38	274.59	144.89
Merged-chr7-19699771-3	chr7	19699282	19700282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009696)	promoter-TSS (NM_009696)	-594.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	75.51	74.19	38.85	76.92	78.84	134.23	80.27	99.49	36.85
Merged-chr1-191327626-3	chr1	191327082	191328082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	intron (NM_025864, intron 1 of 7)	1617.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	205.94	222.1	169.27	172.73	170.28	161.56	235.53	337.82	149.89
Merged-chr4-137864974-3	chr4	137864461	137865461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	2724.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	89.24	58.06	35.15	133.59	102.63	86.81	52.81	41.56	22.48
Merged-chr12-102745026-3	chr12	102744508	102745508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001324515, exon 2 of 2)	exon (NM_001324515, exon 2 of 2)	1248.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	104.11	81.56	46.25	90.41	97.5	53.05	105.62	103.47	42.47
Merged-chr1-131096993-3	chr1	131096492	131097492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	CpG	851.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	431.9	482.9	386.63	462.86	418.92	349.65	379.17	441.28	256.68
Merged-chr11-59948178-3	chr11	59947686	59948686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045273)	promoter-TSS (NR_045273)	-28.0	NM_138675	192191.0	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	76.08	74.19	46.25	56.0	59.25	51.44	50.7	38.91	31.23
Merged-chr13-67553073-3	chr13	67552530	67553530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131100)	promoter-TSS (NR_131100)	122.0	NM_001035231	212276.0	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	73.79	109.67	85.1	79.62	83.51	91.63	113.01	74.73	63.7
Merged-chr16-25058219-3	chr16	25057726	25058726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1413.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	102.4	75.57	24.05	122.12	123.62	92.44	84.49	69.42	45.59
Merged-chr10-122792606-1	chr10	122792106	122793106	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	B2_Mm2|SINE|B2	113291.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.86	3.69	0.0	3.37	2.33	4.82	29.57	41.56	11.24
Merged-chr3-96635461-3	chr3	96634928	96635928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162387)	promoter-TSS (NM_001162387)	-2.0	NM_011069	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	50.34	46.08	89.72	51.28	53.18	71.54	67.6	57.48	47.46
Merged-chr3-98227280-3	chr3	98226778	98227778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026328, intron 2 of 5)	MIR|SINE|MIR	5122.0	NM_026328	67709.0	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	12.01	4.15	7.4	11.47	11.2	12.86	6.34	3.54	7.49
Merged-chr10-93160649-3	chr10	93160149	93161149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146239)	promoter-TSS (NM_146239)	-227.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	159.03	135.01	122.09	171.38	134.35	165.58	179.55	152.55	124.91
Merged-chr16-45142793-3	chr16	45142309	45143309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 6 of 6)	intron (NM_028756, intron 6 of 6)	15864.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	26.31	32.25	24.05	37.78	29.39	27.33	9.51	7.52	7.49
Merged-chr15-93275843-1	chr15	93275343	93276343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001346785)	promoter-TSS (NM_001346785)	-664.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	93.24	95.84	103.59	70.85	73.71	85.2	63.37	91.09	69.95
Merged-chr9-96391509-3	chr9	96390973	96391973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27042.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	109.83	104.14	96.2	131.57	73.24	109.32	160.54	173.33	91.18
Merged-chr11-69424074-3	chr11	69423564	69424564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-10389.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	155.03	98.61	91.57	160.58	78.84	100.47	116.18	117.17	71.2
Merged-chr5-25705790-3	chr5	25705281	25706281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020570)	promoter-TSS (NM_020570)	16.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	40.62	27.65	18.5	28.34	35.92	24.11	35.91	28.74	21.86
Merged-chr15-81836619-3	chr15	81836117	81837117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21709.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	227.11	193.99	147.07	228.05	201.07	180.85	262.99	234.35	110.54
Merged-chr19-10880248-3	chr19	10879738	10880738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	1505.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	60.64	40.09	49.95	47.23	33.12	41.8	21.12	36.7	19.36
Merged-chr2-128128071-3	chr2	128127574	128128574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284410, intron 1 of 3)	CpG-8520	499.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	183.06	143.76	133.19	120.77	96.57	145.49	121.46	105.24	104.3
Merged-chr1-64360678-2	chr1	64360177	64361177	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172127.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	9.72	3.69	1.85	10.12	12.6	23.31	10.56	11.94	7.49
Merged-chr4-125066699-3	chr4	125066210	125067210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175246)	promoter-TSS (NM_175246)	38.0	NM_001356560	76793.0	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	139.01	154.36	104.52	121.45	118.96	90.83	154.2	129.55	76.82
Merged-chr11-115134009-3	chr11	115133484	115134484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145634)	promoter-TSS (NM_145634)	8.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	103.54	122.57	91.57	145.74	108.7	120.57	138.36	165.37	96.8
Merged-chr1-86064349-3	chr1	86063867	86064867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027357)	promoter-TSS (NM_027357)	-252.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	92.67	119.8	61.05	101.88	116.63	75.56	95.06	98.6	53.71
Merged-chr14-118709910-3	chr14	118709418	118710418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-3699.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	18.88	10.14	27.75	16.87	15.39	8.04	20.07	14.15	8.74
Merged-chr14-59557268-1	chr14	59556768	59557768	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40691.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	7.44	5.53	3.7	3.37	1.87	6.43	7.39	2.65	3.12
Merged-chr10-63023997-3	chr10	63023504	63024504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	-155.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	198.5	178.32	223.84	169.35	175.41	174.42	214.41	182.17	114.29
Merged-chr7-83645646-3	chr7	83645143	83646143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 18 of 18)	intron (NM_001360088, intron 18 of 18)	9852.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	84.09	62.67	46.25	64.1	58.31	78.77	68.65	53.06	78.69
Merged-chr11-3152537-2	chr11	3152036	3153036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	28515.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	32.61	58.52	54.57	47.23	70.44	94.85	1.06	1.77	91.18
Merged-chr14-21501217-3	chr14	21500698	21501698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 1 of 16)	CpG	1413.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	258.0	213.8	182.22	230.75	167.48	167.99	233.42	180.4	99.92
Merged-chr5-100518307-3	chr5	100517820	100518820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012001)	promoter-TSS (NM_012001)	11.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	62.93	48.38	51.8	55.33	57.85	73.95	71.82	67.21	46.22
Merged-chr10-40229950-3	chr10	40229450	40230450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17029.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	86.38	105.98	74.0	130.9	99.37	74.75	183.78	181.29	74.32
Merged-chr13-24800747-3	chr13	24800233	24801233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024473)	promoter-TSS (NM_024473)	-924.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	316.92	263.11	191.47	298.9	205.26	168.8	264.05	286.52	170.5
Merged-chr4-55651265-3	chr4	55650759	55651759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-118784.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	305.48	269.56	145.22	335.33	270.57	251.59	268.27	222.85	142.39
Merged-chr4-150064429-3	chr4	150063925	150064925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4029.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	26.31	10.6	1.85	41.16	29.86	18.49	14.79	13.27	3.75
Merged-chr4-116807671-3	chr4	116807173	116808173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133250)	promoter-TSS (NM_133250)	-61.0	NM_133250	70603.0	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	140.73	154.36	110.07	109.3	103.1	141.47	153.15	132.65	78.07
Merged-chr2-129515186-3	chr2	129514687	129515687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	21415.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	187.06	179.25	126.72	180.82	190.34	121.37	149.98	161.39	84.31
Merged-chr10-60738322-3	chr10	60737837	60738837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	B1_Mm|SINE|Alu	14445.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	40.62	29.95	48.1	33.74	21.93	34.56	60.2	42.01	35.6
Merged-chr2-150136684-3	chr2	150136188	150137188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181266)	promoter-TSS (NM_181266)	-10.0	NM_181266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	66.36	59.44	64.75	53.98	60.18	59.48	68.65	73.84	29.35
Merged-chr10-127536004-3	chr10	127535487	127536487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1428.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	21.74	14.75	12.02	16.87	7.46	4.82	16.9	15.92	9.37
Merged-chr11-97241460-3	chr11	97240941	97241941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008942, intron 8 of 22)	intron (NM_008942, intron 8 of 22)	39135.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	90.38	87.55	65.67	91.76	92.37	55.46	91.89	119.83	86.18
Merged-chr14-67188515-3	chr14	67188024	67189024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44768.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	53.2	67.27	50.87	62.07	71.84	85.2	54.92	74.28	33.72
Merged-chr4-33099327-3	chr4	33098824	33099824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33232.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	33.18	19.35	10.17	26.99	20.99	20.09	19.01	15.03	16.24
Merged-chr1-184563079-3	chr1	184562577	184563577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5386.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	97.25	77.87	24.97	100.53	56.91	50.64	62.31	51.29	19.98
Merged-chr11-54727566-3	chr11	54727073	54728073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	intron (NM_178626, intron 3 of 5)	60130.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	98.97	99.07	59.2	85.69	74.17	50.64	49.64	70.3	47.46
Merged-chr11-52094795-3	chr11	52094314	52095314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4010.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	98.39	46.08	18.5	124.15	111.5	76.36	58.09	40.24	33.1
Merged-chr6-116682454-3	chr6	116681943	116682943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8607.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	112.12	119.34	106.37	122.8	93.77	110.12	104.56	113.19	99.92
Merged-chr15-58734317-3	chr15	58733827	58734827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89100.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	60.07	63.59	52.72	80.29	71.38	69.13	57.03	48.2	28.73
Merged-chr17-71489884-3	chr17	71489391	71490391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-14548.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	65.79	46.54	74.0	55.33	30.79	39.39	77.1	76.05	62.45
Merged-chr3-107087579-3	chr3	107087069	107088069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-13998.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	13.73	13.82	16.65	17.54	14.0	15.27	22.18	13.71	12.49
Merged-chr13-67375764-3	chr13	67375270	67376270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	-7.0	NM_001001186	408065.0	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	86.95	84.78	42.55	66.12	47.58	55.46	104.56	107.0	68.7
Merged-chr8-70538185-3	chr8	70537681	70538681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	293.46	276.01	189.62	283.38	256.11	161.56	302.07	371.86	133.02
Merged-chr10-5824269-3	chr10	5823760	5824760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175374)	promoter-TSS (NM_175374)	-317.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	69.22	85.25	94.35	64.1	69.04	88.42	84.49	76.49	72.45
Merged-chr10-128270415-3	chr10	128269908	128270908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019963)	promoter-TSS (NM_019963)	-90.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	140.15	140.54	147.07	128.87	158.61	110.92	149.98	205.17	94.93
Merged-chr13-43767906-3	chr13	43767382	43768382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17230.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	173.9	104.6	58.27	259.09	146.48	157.54	151.03	140.17	68.7
Merged-chr6-28423537-3	chr6	28423033	28424033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007480)	promoter-TSS (NM_007480)	-71.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	180.2	180.63	208.11	151.81	128.76	163.17	183.78	132.65	131.15
Merged-chr8-116314886-3	chr8	116314366	116315366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-190149.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	99.54	103.22	85.1	81.64	58.78	103.69	120.41	114.52	84.31
Merged-chr2-73054248-3	chr2	73053753	73054753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73807.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	89.81	59.9	61.97	85.01	50.85	80.38	96.11	83.57	74.32
Merged-chr18-56925622-3	chr18	56925133	56926133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177115)	promoter-TSS (NM_177115)	-85.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	52.63	53.45	42.55	56.0	49.92	64.3	43.3	26.53	18.11
Merged-chr5-149184462-3	chr5	149183968	149184968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286825)	promoter-TSS (NM_001286825)	-92.0	NM_001115153	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	174.48	131.32	132.27	188.92	121.76	151.11	232.36	224.62	103.05
Merged-chr7-28741928-3	chr7	28741503	28742503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023637)	promoter-TSS (NM_023637)	35.0	NM_023637	71984.0	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	184.2	223.94	142.44	147.76	144.62	122.98	168.99	175.1	88.06
Merged-chr1-66817025-3	chr1	66816534	66817534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	CpG	561.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	349.52	300.43	309.86	375.82	313.96	322.32	330.59	332.07	276.67
Merged-chr14-40921416-3	chr14	40920933	40921933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	26776.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	46.91	53.45	52.72	54.65	29.86	50.64	43.3	23.43	26.85
Merged-chr7-24593879-3	chr7	24593377	24594377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023154, exon 2 of 8)	5' UTR (NM_023154, exon 2 of 8)	-6236.0	NM_001033205	101544.0	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	29.75	22.58	12.02	31.71	19.13	30.54	31.69	15.03	14.36
Merged-chr2-129801507-3	chr2	129801008	129802008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029452)	promoter-TSS (NR_029452)	-49.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	86.38	119.8	105.44	102.56	112.9	90.83	99.28	86.22	57.46
Merged-chr13-23574343-3	chr13	23573831	23574831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	-50.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	118.42	85.25	79.55	121.45	72.31	93.24	67.6	82.24	73.07
Merged-chr4-81742732-3	chr4	81742236	81743236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-255723.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	26.31	29.95	20.35	37.11	22.86	27.33	30.63	28.74	23.73
Merged-chr7-67372869-3	chr7	67372368	67373368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291191)	promoter-TSS (NM_001291191)	-10.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	307.76	270.94	248.81	290.8	218.79	228.28	305.24	235.68	209.84
Merged-chr5-134452506-3	chr5	134451956	134452956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	3806.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	29.75	22.58	19.42	63.42	33.12	40.99	67.6	49.96	19.98
Merged-chr11-101984262-3	chr11	101983770	101984770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	521.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	435.33	296.28	257.14	368.4	263.11	230.69	327.42	382.03	171.75
Merged-chr15-59828619-3	chr15	59828135	59829135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33676.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	48.62	32.72	22.2	60.72	39.65	29.74	33.8	26.09	12.49
Merged-chr4-117041605-3	chr4	117041100	117042100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111277, intron 3 of 11)	intron (NM_001111277, intron 3 of 11)	22198.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	78.37	74.65	62.9	66.12	58.31	79.58	84.49	109.66	78.69
Merged-chr2-5036585-3	chr2	5036062	5037062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-23771.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	276.3	277.39	144.29	200.39	156.75	126.19	284.11	370.98	108.04
Merged-chr10-80161000-3	chr10	80160493	80161493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-6846.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	188.78	162.2	147.07	199.04	124.09	165.58	222.86	217.99	114.29
Merged-chr1-171957526-3	chr1	171957030	171958030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38174.0	NR_151536	105244010.0	Mm.417758	NR_151535		Gm37065	-	predicted gene, 37065	ncRNA	29.75	29.95	18.5	21.59	19.13	34.56	30.63	20.34	23.73
Merged-chr2-118479715-3	chr2	118479206	118480206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009273)	promoter-TSS (NM_009273)	-10.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	134.43	121.19	102.67	128.87	122.23	119.76	147.87	152.55	109.29
Merged-chr11-84555022-3	chr11	84554524	84555524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	29364.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	26.31	30.41	9.25	21.59	21.93	11.25	33.8	26.97	18.74
Merged-chr7-121258961-1	chr7	121258461	121259461	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133335.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	2.29	3.23	0.0	4.72	2.33	3.22	0.0	0.0	2.5
Merged-chr2-6267767-3	chr2	6267253	6268253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-54759.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	98.97	46.54	29.6	78.27	49.45	38.58	42.25	38.47	21.23
Merged-chr7-116093233-3	chr7	116092740	116093740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019772)	promoter-TSS (NM_019772)	-91.0	NR_029433	69350.0	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	113.27	101.37	72.15	128.2	82.11	100.47	138.36	93.74	53.71
Merged-chr17-73942743-3	chr17	73942239	73943239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 2 of 35)	MIRb|SINE|MIR	7457.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	319.21	276.47	157.24	388.64	355.01	214.61	314.74	391.76	147.39
Merged-chr3-27710570-3	chr3	27710129	27711129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-177.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	380.99	317.02	300.61	389.99	319.56	278.91	331.64	212.68	194.85
Merged-chr12-3344420-3	chr12	3343917	3344917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20715.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	169.9	151.6	119.32	154.51	97.03	135.84	208.07	175.98	122.41
Merged-chr11-110166083-3	chr11	110165588	110166588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147220, intron 1 of 38)	intron (NM_147220, intron 1 of 38)	2065.0	NM_147220	217262.0	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	57.78	62.67	37.0	43.18	49.92	34.56	41.19	42.01	45.59
Merged-chr1-180300481-3	chr1	180299981	180300981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-29995.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	28.03	24.42	7.4	27.66	17.26	17.68	22.18	19.46	26.23
Merged-chr15-86214399-3	chr15	86213910	86214910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145476)	promoter-TSS (NM_145476)	-49.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	462.79	401.34	418.08	417.65	353.61	326.34	424.59	456.32	198.6
Merged-chr8-4312253-1	chr8	4311753	4312753	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010485, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	12847.0	NM_010485	15568.0	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	8.58	12.44	8.32	10.12	7.0	9.65	11.62	4.86	13.12
Merged-chr17-67347333-5	chr17	67346834	67347834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	7125.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	341.52	326.24	207.19	399.43	341.95	262.84	288.34	352.41	149.26
Merged-chr11-69672489-3	chr11	69672005	69673005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144958)	promoter-TSS (NM_144958)	-82.0	NM_001159375	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	332.36	240.99	184.99	324.54	178.67	172.81	228.14	227.72	158.63
Merged-chr16-13160503-3	chr16	13159989	13160989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50753.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	20.02	16.13	11.1	24.29	9.33	20.09	11.62	5.75	9.99
Merged-chr8-84981093-3	chr8	84980584	84981584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2336.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	458.79	364.48	235.86	410.23	296.7	278.91	395.01	465.16	200.47
Merged-chr10-94960255-3	chr10	94959830	94960830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-15752.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.0	8.29	2.77	28.34	17.73	16.08	12.67	6.19	5.62
Merged-chr11-34072486-3	chr11	34071991	34072991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	25563.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	56.63	57.6	59.2	55.33	54.58	64.3	49.64	45.1	28.1
Merged-chr13-92530823-3	chr13	92530308	92531308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173392)	promoter-TSS (NM_173392)	2.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	308.34	344.67	242.34	296.2	302.3	264.45	297.84	379.38	185.48
Merged-chr5-121824314-3	chr5	121823812	121824812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-5039.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	30.32	17.97	37.92	33.06	20.99	33.76	31.69	25.65	30.6
Merged-chr5-92083840-3	chr5	92083344	92084344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080795)	promoter-TSS (NM_001080795)	-100.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	143.01	135.93	139.67	128.87	117.56	136.64	129.91	134.86	91.81
Merged-chr9-57521204-3	chr9	57520710	57521710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	-22.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	276.3	249.28	234.94	236.83	264.04	236.31	260.88	324.55	152.38
Merged-chr11-58214893-3	chr11	58214385	58215385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019440)	promoter-TSS (NM_019440)	-92.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	53.2	77.41	39.77	39.81	50.38	61.09	96.11	93.3	51.21
Merged-chr10-70097008-3	chr10	70096519	70097519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111121)	promoter-TSS (NM_001111121)	-102.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	72.65	62.21	91.57	78.27	67.64	63.5	84.49	72.07	64.33
Merged-chr15-53130934-3	chr15	53130414	53131414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	215269.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	24.6	19.81	18.5	35.76	20.53	20.9	12.67	16.8	8.12
Merged-chr15-55557355-3	chr15	55556863	55557863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	-45.0	NM_134092	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	73.22	80.64	86.95	53.3	57.38	57.87	96.11	68.98	42.47
Merged-chr5-21132135-3	chr5	21131646	21132646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44133.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	243.69	218.41	117.47	250.99	154.41	127.8	183.78	196.32	78.69
Merged-chr16-36639951-3	chr16	36639451	36640451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	26126.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	62.35	70.5	61.05	62.75	55.98	99.67	43.3	62.35	39.35
Merged-chr8-69088633-3	chr8	69088128	69089128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-108.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	165.32	161.27	139.67	215.23	187.07	164.78	219.69	226.83	131.78
Merged-chr9-113781041-3	chr9	113780551	113781551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-12279.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	112.12	116.58	49.95	87.71	95.63	72.34	58.09	72.07	40.59
Merged-chr11-101466211-3	chr11	101465706	101466706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012037)	promoter-TSS (NM_012037)	-7.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	163.61	144.69	122.09	199.04	241.65	179.24	126.74	120.27	59.33
Merged-chr18-30444870-3	chr18	30444398	30445398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172033.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	9.72	27.19	22.2	44.53	35.92	43.4	48.58	41.12	30.6
Merged-chr7-7298671-3	chr7	7298197	7299197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_049193)	promoter-TSS (NR_049193)	139.0	NM_001302386	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	548.6	362.64	372.76	533.03	436.19	361.7	496.41	461.18	239.19
Merged-chr19-45048233-3	chr19	45047726	45048726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362381, intron 1 of 10)	intron (NM_001362381, intron 1 of 10)	650.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	101.83	60.36	86.02	128.2	81.64	135.84	101.39	67.21	100.55
Merged-chr4-83323737-2	chr4	83323212	83324212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	CpG	477.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	262.0	268.64	235.86	209.16	253.31	242.74	255.6	270.16	202.97
Merged-chr9-94538549-4	chr9	94538083	94539083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033145)	promoter-TSS (NM_001033145)	-502.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	151.02	146.07	161.87	147.76	100.77	139.06	153.15	97.72	82.44
Merged-chr15-75679451-3	chr15	75678938	75679938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355589)	promoter-TSS (NM_001355589)	-638.0	NM_028404	72960.0	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	78.94	108.75	117.47	62.07	97.03	76.36	91.89	98.6	53.71
Merged-chr12-112976533-3	chr12	112976024	112977024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145900)	promoter-TSS (NM_001145900)	-39.0	NM_201646	399566.0	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	14.3	8.75	20.35	25.64	17.73	28.94	21.12	15.03	16.24
Merged-chr1-182562804-3	chr1	182562309	182563309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2198.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	4.58	6.91	9.25	6.07	5.6	4.82	5.28	3.1	8.74
Merged-chr8-79294961-3	chr8	79294442	79295442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133823)	promoter-TSS (NM_133823)	14.0	NM_133823	109136.0	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	182.49	148.37	167.42	141.02	153.48	136.64	214.41	182.17	103.05
Merged-chr8-116921711-6	chr8	116921134	116922134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028131)	promoter-TSS (NM_028131)	-106.0	NM_028131	72155.0	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	198.5	193.07	145.22	168.0	162.34	124.59	190.11	150.34	148.01
Merged-chr13-19855088-3	chr13	19854567	19855567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30810.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	30.89	21.66	9.25	28.34	22.39	16.08	11.62	5.31	7.49
Merged-chr8-70234482-3	chr8	70233900	70234900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133972)	promoter-TSS (NM_133972)	22.0	NM_133972	76813.0	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	93.82	104.6	82.32	76.24	86.3	94.04	149.98	127.79	57.46
Merged-chr8-122923082-3	chr8	122922562	122923562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	74688.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	88.67	68.66	39.77	53.98	35.92	31.35	57.03	76.49	42.47
Merged-chr11-70410122-3	chr11	70409614	70410614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029231)	promoter-TSS (NM_029231)	-83.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	79.52	70.96	81.4	90.41	68.11	88.42	91.89	84.9	56.21
Merged-chr10-95416839-3	chr10	95416342	95417342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045338)	promoter-TSS (NR_045338)	15.0	NM_007706	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	46.91	40.09	24.05	55.33	31.26	22.51	54.92	45.99	19.36
Merged-chr1-131827933-3	chr1	131827446	131828446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173865)	promoter-TSS (NM_173865)	-66.0	NM_173865	98396.0	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	78.94	73.26	79.55	129.55	103.56	88.42	87.66	90.2	44.97
Merged-chr13-54218510-3	chr13	54218036	54219036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26403.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	30.32	19.35	10.17	27.66	7.93	20.9	33.8	23.43	34.35
Merged-chr16-58507907-3	chr16	58507356	58508356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	15570.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	257.42	186.16	144.29	249.65	153.48	149.5	266.16	366.11	143.64
Merged-chr2-124576240-3	chr2	124575744	124576744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-34052.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	34.32	33.18	16.65	24.29	19.59	44.21	27.46	19.9	21.86
Merged-chr9-109023491-3	chr9	109022989	109023989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	MLT1-int|LTR|ERVL-MaLR	-15078.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	92.67	65.43	56.42	78.94	60.18	85.2	67.6	56.16	63.08
Merged-chr13-93498522-1	chr13	93498022	93499022	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	1286.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	84.66	70.96	59.2	80.29	97.5	51.44	85.55	72.52	32.48
Merged-chr2-129309213-3	chr2	129308711	129309711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 1 of 6)	intron (NM_010554, intron 1 of 6)	761.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	256.28	250.21	135.04	262.47	241.18	219.43	312.63	369.21	136.15
Merged-chr5-30232521-3	chr5	30232012	30233012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_137634)	promoter-TSS (NR_137634)	-69.0	NM_027652	28042.0	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	30.89	33.18	26.82	35.76	33.12	40.99	40.14	37.58	14.36
Merged-chr5-103754832-3	chr5	103754310	103755310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	237.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	241.98	274.17	165.57	203.09	195.47	169.6	211.24	267.51	147.39
Merged-chr7-92636675-1	chr7	92636175	92637175	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_028665, exon 1 of 12)	5' UTR (NM_028665, exon 1 of 12)	467.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	69.79	55.75	34.22	72.19	48.05	44.21	23.24	27.86	19.36
Merged-chr10-75773463-3	chr10	75772939	75773939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010027)	promoter-TSS (NM_010027)	-65.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	36.61	33.18	19.42	37.78	46.18	33.76	40.14	34.49	18.11
Merged-chr13-100750938-2	chr13	100750445	100751445	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6286.0	NM_025369	66128.0	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	6.29	3.23	1.85	30.36	15.86	8.04	13.73	15.92	7.49
Merged-chr2-164879929-3	chr2	164879423	164880423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146129, intron 1 of 16)	CpG	555.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	332.36	291.22	208.11	323.19	231.85	196.93	227.08	223.29	171.12
Merged-chr3-88082011-3	chr3	88081523	88082523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033484)	promoter-TSS (NM_001033484)	-28.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	13.16	5.99	11.1	33.06	9.33	14.47	28.52	13.71	8.74
Merged-chr4-86874301-3	chr4	86873780	86874780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290541)	promoter-TSS (NM_001290541)	-134.0	NM_001290543	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	73.22	48.84	21.27	39.81	42.45	50.64	26.4	22.55	17.49
Merged-chr16-94241341-3	chr16	94240843	94241843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	48948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	125.85	106.44	92.5	121.45	78.84	86.01	126.74	133.98	83.06
Merged-chr9-70207269-3	chr9	70206758	70207758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181072)	promoter-TSS (NM_181072)	-92.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	32.04	38.25	27.75	27.66	38.25	34.56	8.45	10.17	14.36
Merged-chr3-16008019-3	chr3	16007505	16008505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	48.05	54.37	37.92	43.18	47.58	65.91	46.47	49.08	66.82
Merged-chr4-8911729-3	chr4	8911243	8912243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	160419.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	215.66	211.96	175.74	197.02	150.68	175.23	293.62	272.82	165.5
Merged-chr14-52023118-4	chr14	52022601	52023601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2368.0	NM_027248	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	115.55	146.99	52.72	126.85	114.29	144.68	162.65	170.68	60.58
Merged-chr16-31932970-3	chr16	31932465	31933465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-886.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	222.53	228.55	153.54	198.37	205.73	154.33	168.99	226.39	116.79
Merged-chr12-3891489-3	chr12	3891022	3892022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153743)	promoter-TSS (NM_153743)	-222.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	187.06	204.13	181.29	208.49	231.39	202.55	234.47	220.2	122.41
Merged-chr18-12121423-3	chr18	12120908	12121908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289666, exon 1 of 15)	exon (NM_001289666, exon 1 of 15)	129.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	36.61	40.09	46.25	43.18	44.78	61.09	63.37	38.47	34.97
Merged-chr2-24367587-3	chr2	24367078	24368078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-97.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	94.39	106.9	85.1	118.75	66.24	81.18	120.41	142.82	71.2
Merged-chr9-53387513-5	chr9	53386999	53387999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	URR1A|DNA|hAT-Charlie	3476.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	168.76	184.77	140.59	188.25	145.55	139.86	184.83	185.27	120.53
Merged-chr12-85992642-3	chr12	85992130	85993130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	86411.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	148.16	117.5	45.32	151.14	151.15	101.28	123.57	147.24	66.2
Merged-chr1-180904250-3	chr1	180903752	180904752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133705)	promoter-TSS (NM_133705)	-22.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	37.76	43.31	34.22	47.9	50.38	78.77	67.6	76.49	59.33
Merged-chr5-116024545-3	chr5	116024079	116025079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031869)	promoter-TSS (NM_031869)	-151.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	72.65	81.1	96.2	83.66	59.71	98.06	72.88	62.79	51.84
Merged-chr15-81811406-3	chr15	81810921	81811921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	7.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	256.28	173.25	197.94	260.44	234.19	213.0	239.75	233.02	119.28
Merged-chr16-38457366-3	chr16	38456868	38457868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	211.09	174.18	106.37	205.11	129.22	159.15	195.39	194.11	95.55
Merged-chr2-164911649-6	chr2	164911156	164912156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	94.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	510.27	498.57	391.26	516.83	415.66	301.42	491.13	531.48	241.07
Merged-chr10-63382798-3	chr10	63382236	63383236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253685, intron 1 of 4)	intron (NM_001253685, intron 1 of 4)	293.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	37.18	38.25	28.67	47.23	45.25	40.19	35.91	39.8	30.6
Merged-chr6-13874167-3	chr6	13873708	13874708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045995, intron 1 of 2)	intron (NR_045995, intron 1 of 2)	2639.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	80.09	76.49	30.52	47.23	43.39	29.74	47.53	51.73	29.98
Merged-chr6-85333986-3	chr6	85333472	85334472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-550.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	49.77	71.42	74.0	76.92	56.91	81.99	78.16	84.45	73.07
Merged-chr13-103411976-1	chr13	103411476	103412476	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77484.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	2.86	1.38	7.4	6.07	4.2	1.61	3.17	0.0	0.0
Merged-chrX-18956854-1	chrX	18956354	18957354	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B5|LTR|ERVL	189534.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	4.58	3.23	5.55	10.8	4.2	8.04	3.17	2.21	2.5
Merged-chr10-93357862-2	chr10	93357315	93358315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	21604.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	88.1	80.18	95.27	89.06	97.5	86.01	4.22	3.98	1.25
Merged-chrX-157598511-5	chrX	157597988	157598988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172307, intron 1 of 10)	CpG	227.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	105.83	120.26	96.2	122.8	117.09	131.02	106.67	96.39	88.68
Merged-chr4-145037180-3	chr4	145036688	145037688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144051.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	45.76	61.75	60.12	68.82	52.25	70.73	34.85	49.96	29.35
Merged-chr12-52006497-3	chr12	52006011	52007011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029545)	promoter-TSS (NM_029545)	-4.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	72.08	69.58	50.87	58.7	63.45	46.62	49.64	66.77	40.59
Merged-chr14-102981776-1	chr14	102981276	102982276	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039592)	TTS (NR_039592)	856.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	193.93	202.28	265.46	204.44	141.82	213.81	209.12	168.02	186.73
Merged-chr14-101609236-3	chr14	101608723	101609723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081278)	promoter-TSS (NM_001081278)	-32.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	13.73	15.21	1.85	15.52	17.26	12.86	25.35	22.11	6.87
Merged-chr8-105289208-3	chr8	105288709	105289709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177788)	TTS (NM_177788)	319.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	183.63	137.77	102.67	133.59	97.97	81.18	159.48	130.88	64.95
Merged-chr11-117828398-3	chr11	117827901	117828901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-2387.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	422.18	333.61	265.46	378.52	266.84	274.9	318.97	426.69	199.22
Merged-chr9-107587604-3	chr9	107587103	107588103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025903)	promoter-TSS (NM_025903)	-115.0	NM_025903	15983.0	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	56.06	42.39	24.05	41.83	20.53	28.13	79.21	80.03	23.73
Merged-chr3-126597098-4	chr3	126596560	126597560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001293665, exon 1 of 20)	5' UTR (NM_001293665, exon 1 of 20)	109.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	368.97	332.69	336.68	316.44	315.83	225.86	336.92	316.59	234.82
Merged-chr11-103267577-3	chr11	103267090	103268090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016896)	promoter-TSS (NM_016896)	-189.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	97.25	67.27	53.65	110.65	59.25	93.24	102.45	73.84	63.7
Merged-chr7-27228615-3	chr7	27228137	27229137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181593)	promoter-TSS (NM_181593)	-40.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	244.84	286.15	246.04	199.72	190.34	245.16	219.69	267.07	153.01
Merged-chr11-103984288-2	chr11	103983800	103984800	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304574, exon 5 of 5)	3' UTR (NM_001304574, exon 5 of 5)	17429.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	4.58	7.83	16.65	227.38	160.48	176.03	176.38	179.96	159.88
Merged-chr13-58158730-3	chr13	58158225	58159225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198004, intron 1 of 4)	B3|SINE|B2	1076.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	68.07	65.89	56.42	56.68	32.19	37.78	84.49	50.41	30.6
Merged-chr16-92787204-3	chr16	92786695	92787695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	38879.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	32.61	16.13	25.9	45.21	24.26	42.6	25.35	20.78	18.11
Merged-chr14-19975145-3	chr14	19974684	19975684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	1509.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	129.86	132.25	90.65	132.24	108.7	69.93	103.51	86.22	45.59
Merged-chr17-47295392-3	chr17	47294900	47295900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65170.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	139.58	149.29	91.57	166.66	138.55	118.16	100.34	116.29	90.56
Merged-chr17-35667600-3	chr17	35667113	35668113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175137)	promoter-TSS (NM_175137)	-21.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	68.07	50.69	57.35	82.99	87.7	67.52	66.54	54.83	53.71
Merged-chr5-65492947-3	chr5	65492446	65493446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133697)	promoter-TSS (NM_133697)	-111.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	425.04	262.65	186.84	431.82	291.1	238.73	290.45	281.66	184.86
Merged-chr4-105169121-1	chr4	105168621	105169621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11774.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	28.03	13.36	18.5	24.29	12.13	17.68	25.35	16.36	9.99
Merged-chr3-154597109-3	chr3	154596628	154597628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168358)	promoter-TSS (NM_001168358)	-30.0	NM_172474	209584.0	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	56.06	51.15	53.65	73.54	93.77	73.14	84.49	69.86	33.72
Merged-chr1-128244164-3	chr1	128243598	128244598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026390)	promoter-TSS (NM_026390)	-39.0	NM_026390	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	343.23	329.46	190.54	266.51	316.29	237.12	229.19	290.95	157.38
Merged-chr6-125313916-3	chr6	125313411	125314411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010736)	promoter-TSS (NM_010736)	-26.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	285.45	222.56	158.17	260.44	228.59	243.55	273.55	228.16	136.15
Merged-chr19-4097632-1	chr19	4097132	4098132	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026373, intron 1 of 3)	intron (NM_026373, intron 1 of 3)	281.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	185.35	123.49	74.0	170.7	95.63	105.3	152.09	144.59	98.68
Merged-chr1-191168991-1	chr1	191168491	191169491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4174.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	5.72	3.69	2.77	5.4	1.87	1.61	6.34	1.77	4.37
Merged-chr9-114861646-3	chr9	114861163	114862163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-17511.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	22.88	17.97	11.1	23.62	18.19	28.94	16.9	11.5	7.49
Merged-chr14-27508464-3	chr14	27507959	27508959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177111)	promoter-TSS (NM_177111)	1.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	16.02	19.81	12.02	31.71	33.12	36.17	38.02	27.86	10.62
Merged-chr5-123141319-3	chr5	123140890	123141890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	-803.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	180.77	171.87	135.97	178.8	88.64	155.93	205.96	185.27	152.38
Merged-chr10-95677702-3	chr10	95677212	95678212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-113566.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	114.41	118.42	69.37	128.2	97.97	111.73	89.78	113.64	58.71
Merged-chr11-20532642-3	chr11	20532091	20533091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10662.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	286.03	185.7	147.07	289.45	162.81	177.64	235.53	206.05	131.78
Merged-chr6-21949549-3	chr6	21949036	21950036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023626)	promoter-TSS (NM_023626)	-35.0	NM_001311061	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	200.79	163.58	100.82	240.2	150.22	118.96	205.96	155.2	80.56
Merged-chr15-53668560-1	chr15	53668060	53669060	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	MLT1K|LTR|ERVL-MaLR	-54281.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	7.44	7.83	12.95	6.07	2.8	12.86	3.17	2.21	6.25
Merged-chrX-71214921-3	chrX	71214412	71215412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019926)	promoter-TSS (NM_019926)	-94.0	NM_001164192	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	71.51	70.96	40.7	72.87	44.78	61.09	70.76	72.96	48.09
Merged-chr6-119809315-3	chr6	119808822	119809822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155458, intron 2 of 18)	intron (NR_155458, intron 2 of 18)	38828.0	NM_053204	111173.0	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	8.01	4.61	6.47	6.75	3.27	4.82	4.22	1.77	9.99
Merged-chr15-76802118-3	chr15	76801611	76802611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	16059.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	73.22	60.36	57.35	59.38	46.65	63.5	43.3	46.43	32.48
Merged-chr3-88685397-3	chr3	88684891	88685891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028814)	promoter-TSS (NM_028814)	-396.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	171.62	218.41	144.29	176.78	157.21	180.05	163.71	262.65	121.16
Merged-chr3-139064520-3	chr3	139064023	139065023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	MLT1G|LTR|ERVL-MaLR	10678.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	68.07	85.25	29.6	49.93	41.05	29.74	57.03	46.43	63.08
Merged-chr3-14893910-3	chr3	14893414	14894414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	7626.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	14.3	17.05	11.1	14.84	8.4	7.23	2.11	4.86	1.87
Merged-chr5-110421143-3	chr5	110420650	110421650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 2 of 18)	intron (NM_001142642, intron 2 of 18)	27353.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	28.03	47.46	41.62	33.74	24.26	33.76	34.85	27.86	48.71
Merged-chr11-20231359-3	chr11	20230859	20231859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	18065.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	93.24	92.16	68.45	74.89	55.05	87.61	91.89	88.88	66.2
Merged-chr8-46887503-3	chr8	46887015	46888015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-99372.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	149.31	100.45	104.52	130.9	68.11	135.04	124.63	147.24	75.57
Merged-chr9-95566509-3	chr9	95566013	95567013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6696.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	119.56	133.17	70.3	129.55	107.3	94.85	152.09	189.25	83.06
Merged-chr9-77910742-3	chr9	77910257	77911257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6608.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	498.83	451.57	339.46	588.35	513.63	363.31	562.95	568.63	191.11
Merged-chr5-145231745-3	chr5	145231230	145232230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083958)	promoter-TSS (NM_001083958)	5.0	NM_001347533	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	513.7	499.95	394.96	516.16	640.98	418.77	499.58	505.4	252.93
Merged-chr7-96546856-2	chr7	96546349	96547349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-204885.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	47.48	89.85	56.42	37.78	51.78	53.85	10.56	10.61	9.37
Merged-chr15-88819464-3	chr15	88818939	88819939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-121.0	NM_145477	223774.0	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	102.4	119.8	80.47	97.83	86.3	66.71	107.73	98.16	42.47
Merged-chr10-12842747-3	chr10	12842243	12843243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	18992.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	20.59	10.6	1.85	22.94	13.06	15.27	23.24	12.38	3.75
Merged-chr4-40845662-3	chr4	40845158	40846158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	4480.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	184.2	177.4	181.29	240.87	139.95	139.06	188.0	192.78	106.17
Merged-chr14-70599710-3	chr14	70599216	70600216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194345, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	119.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	149.31	97.23	118.39	218.61	124.09	111.73	182.72	91.53	78.07
Merged-chr2-168205445-3	chr2	168204944	168205944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310086, intron 1 of 4)	intron (NM_001310086, intron 1 of 4)	1668.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	46.91	43.77	55.5	31.04	28.46	33.76	43.3	40.68	43.72
Merged-chr1-36596248-2	chr1	36595742	36596742	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2910.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.58	2.3	1.85	34.41	31.26	29.74	48.58	56.6	37.47
Merged-chr17-34031691-3	chr17	34031205	34032205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205216)	promoter-TSS (NM_001205216)	-15.0	NM_008202	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	415.31	226.71	234.01	462.18	236.52	307.05	398.18	306.42	180.49
Merged-chr8-11249992-3	chr8	11249481	11250481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-62824.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	37.18	41.47	25.9	56.68	48.05	41.8	12.67	8.4	14.99
Merged-chr2-32587915-3	chr2	32587426	32588426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011373, intron 1 of 4)	intron (NM_011373, intron 1 of 4)	848.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	222.53	197.68	105.44	218.61	157.68	154.33	312.63	343.56	97.43
Merged-chr8-14669611-3	chr8	14669142	14670142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-218894.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	27.46	29.49	17.57	45.88	30.79	16.88	40.14	31.39	23.73
Merged-chr5-142463924-3	chr5	142463425	142464425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172725)	promoter-TSS (NM_172725)	-6.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	160.75	166.34	153.54	151.81	194.07	176.83	207.01	176.42	139.89
Merged-chr19-16140807-3	chr19	16140305	16141305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7974.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	281.45	340.98	173.89	226.71	220.19	160.76	230.25	271.05	140.52
Merged-chr5-141081075-3	chr5	141080573	141081573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80477.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	253.99	247.9	135.04	240.2	176.81	150.31	211.24	229.04	84.94
Merged-chr19-36083727-3	chr19	36083227	36084227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	11.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	36.04	35.02	35.15	33.74	34.06	47.42	43.3	33.6	23.11
Merged-chr14-60738734-3	chr14	60738259	60739259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310594, intron 1 of 9)	L1MB2|LINE|L1	5855.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	26.31	29.49	14.8	15.52	16.33	40.19	32.74	44.22	24.98
Merged-chr4-15265699-3	chr4	15265218	15266218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181401)	promoter-TSS (NM_181401)	-102.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	168.18	97.69	110.07	126.85	115.23	127.8	108.79	84.9	67.45
Merged-chr11-100702658-3	chr11	100702116	100703116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030150, intron 4 of 12)	B2_Mm2|SINE|B2	1655.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	94.96	111.51	61.97	202.42	155.81	144.68	182.72	258.67	96.8
Merged-chrX-38462293-3	chrX	38461802	38462802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5842.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	29.17	20.74	11.1	23.62	25.66	29.74	26.4	30.07	21.86
Merged-chr1-58445533-3	chr1	58445019	58446019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027351)	promoter-TSS (NM_027351)	-33.0	NM_027351	70225.0	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	45.19	38.71	42.55	62.07	39.19	53.05	66.54	54.83	41.84
Merged-chr4-34778397-3	chr4	34777910	34778910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330756)	promoter-TSS (NM_001330756)	-44.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	26.31	35.02	33.3	43.18	50.85	51.44	46.47	47.31	22.48
Merged-chr4-80311310-3	chr4	80310799	80311799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-522914.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	27.46	25.34	26.82	27.66	33.59	40.19	33.8	42.45	18.11
Merged-chr6-72037770-3	chr6	72037271	72038271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	4757.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	54.92	47.46	24.97	78.94	44.78	61.09	50.7	37.14	32.48
Merged-chr7-118482606-3	chr7	118482141	118483141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9334.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	88.1	118.88	98.05	126.17	96.1	129.41	148.92	149.45	99.92
Merged-chr8-126853228-3	chr8	126852716	126853716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4196.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	143.59	128.56	135.97	183.52	149.75	142.27	175.33	170.23	94.93
Merged-chr16-50760115-3	chr16	50759584	50760584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23325.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	32.61	30.41	26.82	26.99	26.59	25.72	29.57	22.99	19.36
Merged-chr10-80752383-3	chr10	80751877	80752877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2826.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	231.68	187.54	140.59	226.71	130.62	132.63	256.65	295.81	138.65
Merged-chr10-128566164-3	chr10	128565662	128566662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011119)	promoter-TSS (NM_011119)	-228.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	97.82	82.94	77.7	99.86	96.57	112.53	98.23	105.68	62.45
Merged-chr2-35496113-3	chr2	35495615	35496615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34666.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	238.55	196.29	124.87	232.1	200.6	181.66	153.15	136.63	110.54
Merged-chr3-8746852-3	chr3	8746366	8747366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79828.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	136.15	165.42	92.5	190.95	215.53	122.98	185.89	188.81	58.08
Merged-chr4-43259803-2	chr4	43259285	43260285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081413, intron 37 of 39)	intron (NM_001081413, intron 37 of 39)	-7374.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	72.65	62.67	45.32	66.8	51.78	75.56	1.06	2.65	7.49
Merged-chr4-114934280-3	chr4	114933761	114934761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8248.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	11.44	9.22	2.77	10.8	4.2	4.82	6.34	3.54	5.0
Merged-chr4-9641160-3	chr4	9640655	9641655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	2562.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	26.31	23.04	9.25	49.25	19.13	17.68	73.93	61.02	34.35
Merged-chr4-132962820-3	chr4	132962305	132963305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11290.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	88.67	77.87	52.72	97.83	64.84	69.93	72.88	107.45	30.6
Merged-chr4-63544726-3	chr4	63544227	63545227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024173)	promoter-TSS (NM_024173)	-38.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	163.61	224.4	167.42	207.14	267.31	213.81	250.32	255.13	141.14
Merged-chr3-94975260-2	chr3	94974748	94975748	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293716, intron 1 of 9)	intron (NM_001293716, intron 1 of 9)	517.0	NM_001293716	107650.0	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase beta	protein-coding	156.74	133.17	146.14	117.4	113.83	141.47	166.88	123.81	83.06
Merged-chr6-34867824-3	chr6	34867346	34868346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	4700.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	128.14	144.23	100.82	131.57	111.5	120.57	98.23	119.39	68.07
Merged-chr16-57246764-3	chr16	57246261	57247261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15295.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	16.59	11.98	12.95	24.96	14.0	6.43	31.69	11.05	3.75
Merged-chr12-4154466-1	chr12	4153966	4154966	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	20313.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	25.17	17.97	28.67	33.06	34.06	42.6	13.73	7.07	13.74
Merged-chr10-34249762-3	chr10	34249247	34250247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-32443.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	25.74	20.74	14.8	41.16	15.86	13.66	27.46	19.01	14.36
Merged-chr6-114258919-3	chr6	114258434	114259434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23701.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	139.58	83.4	68.45	141.02	65.31	67.52	99.28	72.52	43.72
Merged-chr6-108529572-3	chr6	108529091	108530091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	39848.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	66.93	62.67	50.87	103.23	62.05	62.7	65.48	68.09	24.98
Merged-chr1-54557702-3	chr1	54557209	54558209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163314)	promoter-TSS (NM_001163314)	-25.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	45.76	44.7	36.07	59.38	35.92	74.75	67.6	48.64	33.1
Merged-chr14-54517539-3	chr14	54517045	54518045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013768)	promoter-TSS (NM_013768)	-75.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	17.73	13.36	18.5	20.24	21.93	33.76	31.69	30.95	11.24
Merged-chr7-128321360-3	chr7	128320869	128321869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23238.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	36.04	22.58	18.5	45.21	12.13	17.68	44.36	30.95	34.35
Merged-chr5-21189219-3	chr5	21188704	21189704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 1 of 26)	intron (NR_153365, intron 1 of 26)	2937.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	245.98	218.87	119.32	203.76	170.28	163.17	171.1	188.36	88.06
Merged-chrX-75127053-3	chrX	75126549	75127549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	3967.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	53.77	59.9	28.67	58.7	56.91	53.85	43.3	52.62	24.98
Merged-chr12-80852212-3	chr12	80851701	80852701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	61669.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	63.5	69.12	39.77	65.45	42.92	63.5	89.78	81.8	58.08
Merged-chr2-131086842-3	chr2	131086337	131087337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-72.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	135.0	152.06	146.14	137.64	124.56	159.95	134.14	144.59	96.18
Merged-chr6-87810933-3	chr6	87810428	87811428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	851.0	NM_001039394	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	418.74	414.24	278.41	353.55	327.96	237.92	303.13	310.84	198.6
Merged-chr6-127266206-3	chr6	127265720	127266720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41747.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	52.06	28.57	40.7	41.16	20.53	38.58	39.08	25.65	14.99
Merged-chr8-83748818-3	chr8	83748351	83749351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7540.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	437.62	312.41	222.91	439.24	340.55	295.79	361.22	499.65	166.75
Merged-chr5-66067342-3	chr5	66066851	66067851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	30828.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	124.71	102.75	85.1	139.67	81.17	94.04	135.19	123.81	63.08
Merged-chr2-145903284-3	chr2	145902794	145903794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001141965)	promoter-TSS (NM_001141965)	53.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	71.51	70.96	49.02	105.93	67.64	85.2	115.12	76.49	39.97
Merged-chr9-48494521-3	chr9	48494019	48495019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004191)	promoter-TSS (NM_001004191)	811.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	346.09	542.34	276.56	327.24	480.04	292.58	323.19	390.43	148.64
Merged-chr4-88760638-2	chr4	88760131	88761131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085531)	promoter-TSS (NM_001085531)	-143.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	31.46	17.05	0.0	0.0	0.0	0.0	28.52	15.92	8.74
Merged-chr1-6214708-3	chr1	6214227	6215227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009826)	promoter-TSS (NM_009826)	65.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	254.56	241.91	199.79	230.08	288.3	246.76	226.02	206.49	130.53
Merged-chr13-74494016-3	chr13	74493563	74494563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-113.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	45.76	64.51	86.95	53.3	54.58	59.48	60.2	77.38	55.58
Merged-chr10-60733921-3	chr10	60733405	60734405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	18877.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	109.83	110.59	74.0	118.75	95.17	108.51	143.64	154.76	51.84
Merged-chrX-101451334-3	chrX	101450841	101451841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013712, intron 4 of 10)	intron (NM_013712, intron 4 of 10)	2232.0	NM_013712	26549.0	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	29.75	40.55	24.05	32.39	22.39	30.54	36.97	24.76	19.98
Merged-chr11-120142796-3	chr11	120142295	120143295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361697, intron 1 of 15)	intron (NM_001361697, intron 1 of 15)	8556.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	72.08	70.96	43.47	99.18	85.84	76.36	71.82	79.59	59.33
Merged-chr1-23433806-3	chr1	23433304	23434304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-50629.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	49.2	98.15	65.67	70.17	61.58	77.97	81.33	97.72	53.71
Merged-chr11-70221051-4	chr11	70220536	70221536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-42.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	41.76	67.74	44.4	45.88	58.78	67.52	65.48	67.21	49.34
Merged-chr10-77540858-3	chr10	77540362	77541362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	10514.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	81.8	64.05	46.25	78.27	66.71	65.91	71.82	54.83	36.22
Merged-chr11-117138340-3	chr11	117137851	117138851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	23179.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	107.55	56.68	32.37	91.09	54.11	53.85	41.19	48.2	29.35
Merged-chr12-102365262-3	chr12	102364767	102365767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	74546.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	86.38	95.84	82.32	112.0	126.42	109.32	87.66	109.66	79.32
Merged-chr14-70927626-3	chr14	70927127	70928127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37520.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	18.88	25.8	24.97	29.01	22.39	54.66	9.51	15.48	18.11
Merged-chr10-94688630-3	chr10	94688120	94689120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	-7.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	262.0	342.36	251.59	380.54	460.44	241.94	350.65	344.89	204.22
Merged-chr6-83455486-3	chr6	83454977	83455977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347313, exon 2 of 12)	5' UTR (NM_001347313, exon 2 of 12)	915.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	150.45	110.13	165.57	134.27	108.7	151.92	144.7	131.77	114.29
Merged-chr16-11455926-3	chr16	11455428	11456428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	50280.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	283.17	364.02	181.29	338.71	308.36	268.47	316.86	402.81	169.87
Merged-chr6-13678070-3	chr6	13677561	13678561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175312)	promoter-TSS (NM_175312)	-95.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	176.76	125.79	130.42	163.96	95.17	74.75	140.47	93.74	85.56
Merged-chr12-71048342-3	chr12	71047856	71048856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 11 of 23)	intron (NM_001081195, intron 11 of 23)	32389.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	23.45	35.48	14.8	19.57	26.12	28.94	16.9	21.22	12.49
Merged-chr1-36987312-3	chr1	36986810	36987810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M7|LINE|L1	-47783.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	24.03	16.59	24.97	24.29	10.26	13.66	23.24	18.13	12.49
Merged-chr9-56161000-3	chr9	56160476	56161476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019793)	promoter-TSS (NM_019793)	94.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	49.2	47.92	47.17	76.24	82.11	57.87	42.25	20.34	26.85
Merged-chr5-151195531-3	chr5	151195045	151196045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5352.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.44	7.83	8.32	18.89	8.86	6.43	23.24	25.65	24.36
Merged-chr14-55092463-3	chr14	55091978	55092978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039198)	promoter-TSS (NM_001039198)	-430.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	56.06	43.77	20.35	52.63	48.05	28.94	51.75	46.87	32.48
Merged-chr2-132265395-3	chr2	132264900	132265900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	2252.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	38.33	26.26	18.5	47.9	33.12	31.35	40.14	57.04	49.34
Merged-chr11-46834374-3	chr11	46833870	46834870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	23571.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	41.19	52.53	49.02	51.95	43.85	82.79	77.1	65.88	51.21
Merged-chr17-84107690-3	chr17	84107204	84108204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29044.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	348.38	331.76	150.77	396.06	370.41	227.47	284.11	390.88	148.64
Merged-chr2-70825714-3	chr2	70825230	70826230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172664)	promoter-TSS (NM_172664)	-250.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	136.72	112.89	110.07	177.45	94.7	116.55	162.65	86.22	86.81
Merged-chr7-34189555-3	chr7	34189051	34190051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026549, intron 4 of 6)	intron (NM_026549, intron 4 of 6)	7119.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	56.63	71.88	59.2	49.25	57.38	61.09	58.09	54.83	46.84
Merged-chr6-39526999-3	chr6	39526509	39527509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	30825.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	120.13	102.29	70.3	124.82	126.89	90.02	136.25	139.72	56.83
Merged-chr9-85328534-3	chr9	85328055	85329055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1405.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	199.07	195.37	135.97	180.15	153.48	151.92	192.23	204.28	123.66
Merged-chr8-104340325-3	chr8	104339842	104340842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024217)	promoter-TSS (NM_024217)	-252.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	145.87	79.72	108.22	124.15	58.31	114.14	108.79	63.67	79.94
Merged-chr18-53862017-3	chr18	53861496	53862496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-117.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	164.18	166.8	137.82	171.38	159.08	106.1	133.08	121.6	78.69
Merged-chr6-125252435-3	chr6	125251923	125252923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13102.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	50.91	46.54	24.05	33.74	31.26	59.48	57.03	66.33	51.21
Merged-chr17-84181720-3	chr17	84181236	84182236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	6211.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	171.62	180.63	137.82	144.39	159.08	132.63	175.33	191.9	108.04
Merged-chr5-109559026-3	chr5	109558501	109559501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016715)	promoter-TSS (NM_016715)	-8.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	254.56	219.33	186.84	171.38	164.68	160.76	253.48	176.87	113.66
Merged-chr11-69581522-3	chr11	69581053	69582053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	CpG	1194.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	237.97	247.9	190.54	190.27	234.65	178.44	213.35	288.29	125.53
Merged-chr15-103370627-3	chr15	103370113	103371113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3822.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	30.32	32.72	31.45	21.59	20.53	23.31	13.73	21.67	25.61
Merged-chrX-12673636-3	chrX	12673135	12674135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175141)	promoter-TSS (NM_175141)	4.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	78.37	88.47	57.35	62.75	63.45	59.48	69.71	80.03	54.96
Merged-chr15-85832298-3	chr15	85831846	85832846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033337)	promoter-TSS (NM_001033337)	42.0	NM_001033337	239570.0	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	32.04	19.81	9.25	24.29	14.46	18.49	32.74	22.55	9.99
Merged-chr1-192092591-3	chr1	192092102	192093102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011633)	promoter-TSS (NM_011633)	-3.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	144.16	140.54	112.84	122.8	136.22	106.9	104.56	122.48	56.21
Merged-chr7-135655344-3	chr7	135654836	135655836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-3022.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	120.13	117.5	91.57	101.88	91.9	73.95	101.39	113.64	104.3
Merged-chr8-104341444-3	chr8	104340915	104341915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024217, intron 1 of 4)	intron (NM_024217, intron 1 of 4)	821.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	165.32	213.34	186.84	177.45	225.32	207.38	133.08	179.08	131.15
Merged-chr8-8239693-3	chr8	8239195	8240195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	421078.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	9.72	14.75	5.55	14.17	16.33	8.04	12.67	9.29	21.23
Merged-chr10-82241288-3	chr10	82240752	82241752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001105557)	promoter-TSS (NM_001105557)	23.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	30.89	26.73	21.27	45.21	23.79	32.15	39.08	32.72	20.61
Merged-chr19-12585482-3	chr19	12584979	12585979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015503)	TTS (NR_015503)	11087.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	140.73	139.62	107.29	112.68	132.49	92.44	129.91	156.97	122.41
Merged-chr8-128558167-2	chr8	128557670	128558670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127484.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	29.75	36.4	15.72	33.06	27.52	16.88	5.28	10.17	5.62
Merged-chr7-106551088-1	chr7	106550588	106551588	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93557.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	73.79	106.44	64.75	68.15	69.04	69.93	38.02	29.63	16.86
Merged-chr10-86885910-3	chr10	86885405	86886405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	106900.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	304.33	309.65	174.82	311.04	284.57	249.98	327.42	466.93	172.37
Merged-chr18-77773639-2	chr18	77773120	77774120	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007505)	promoter-TSS (NM_007505)	1.0	NM_001357533	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	117.27	137.77	78.62	147.09	168.88	122.98	135.19	172.45	51.84
Merged-chr17-56134743-3	chr17	56134234	56135234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-882.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	58.92	62.67	65.67	72.87	59.71	94.85	70.76	84.9	44.34
Merged-chr13-4771643-3	chr13	4771125	4772125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162461.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	149.31	124.87	37.0	132.24	132.02	90.83	94.0	86.66	38.72
Merged-chr11-113751854-3	chr11	113751358	113752358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	-43.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	260.86	285.23	229.39	301.6	308.83	299.81	324.25	397.51	264.8
Merged-chr16-85072808-3	chr16	85072289	85073289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	100578.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	145.3	154.36	122.09	125.5	119.43	125.39	111.96	137.96	73.07
Merged-chr6-59185478-3	chr6	59184976	59185976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23394.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	53.2	33.64	24.05	58.03	41.52	39.39	29.57	23.88	14.99
Merged-chr13-37958750-3	chr13	37958247	37959247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	35461.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	331.79	258.5	177.59	219.28	203.86	195.32	216.52	219.76	98.05
Merged-chr15-35757235-3	chr15	35756726	35757726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 35 of 61)	intron (NM_177151, intron 35 of 61)	-96179.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	23.45	26.73	32.37	29.69	30.79	35.37	25.35	28.74	42.47
Merged-chr11-86807662-3	chr11	86807151	86808151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	9.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	67.5	41.01	53.65	151.14	124.09	122.18	120.41	139.72	76.19
Merged-chr1-183345493-3	chr1	183344981	183345981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177389, intron 6 of 26)	CpG	24084.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	492.54	478.29	318.18	429.8	433.39	314.28	365.44	391.76	196.73
Merged-chr19-3687854-3	chr19	3687357	3688357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1293.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	105.26	90.31	73.07	103.23	55.51	78.77	105.62	115.41	64.33
Merged-chr7-126595046-3	chr7	126594570	126595570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145636)	promoter-TSS (NM_145636)	-160.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	85.81	61.75	66.6	64.77	39.65	40.19	80.27	70.3	46.22
Merged-chr1-167331319-3	chr1	167330772	167331772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039483, exon 7 of 7)	3' UTR (NM_001039483, exon 7 of 7)	-18719.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	288.89	251.59	139.67	263.14	251.45	168.8	278.83	298.91	120.53
Merged-chr3-145924132-3	chr3	145923634	145924634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009740)	promoter-TSS (NM_009740)	-128.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	228.82	222.56	188.69	217.26	201.07	173.62	203.84	229.93	167.37
Merged-chr3-153944648-3	chr3	153944176	153945176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007382)	promoter-TSS (NM_007382)	-33.0	NM_007382	11364.0	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	78.94	70.5	92.5	97.83	76.97	102.88	115.12	91.09	43.72
Merged-chr2-33468583-3	chr2	33468083	33469083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027947)	promoter-TSS (NM_027947)	-51.0	NM_001355612	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	175.05	163.58	141.52	172.05	188.94	111.73	153.15	142.38	55.58
Merged-chr17-79662056-3	chr17	79661548	79662548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	47148.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	20.02	18.43	20.35	31.71	21.93	14.47	21.12	24.32	11.24
Merged-chr13-102886371-3	chr13	102885859	102886859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	126104.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	50.34	67.27	60.12	40.48	42.45	46.62	66.54	65.44	54.33
Merged-chr1-107381646-3	chr1	107381142	107382142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	19328.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	10.3	3.69	3.7	8.1	2.8	4.82	4.22	3.98	2.5
Merged-chr10-53888861-3	chr10	53888301	53889301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137892.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	31.46	32.25	14.8	36.43	40.59	28.94	30.63	27.86	11.24
Merged-chr9-78482564-2	chr9	78482061	78483061	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010106)	promoter-TSS (NM_010106)	-837.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	141.87	179.25	129.49	153.16	131.56	192.11	151.03	183.94	147.39
Merged-chr5-143528108-3	chr5	143527605	143528605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009007)	promoter-TSS (NM_009007)	-74.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	407.3	295.36	349.63	308.35	192.67	255.6	328.47	191.02	169.25
Merged-chr18-37880350-3	chr18	37879846	37880846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-25686.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	16.59	29.03	24.97	10.8	16.79	20.9	25.35	20.78	11.87
Merged-chr17-29500790-1	chr17	29500290	29501290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9745.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.72	1.38	0.0	1.35	2.33	1.61	5.28	0.44	0.62
Merged-chr10-51526318-3	chr10	51525814	51526814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS2|LTR|ERV1	35416.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	303.19	305.96	179.44	343.43	282.7	242.74	331.64	362.58	191.11
Merged-chr17-57341752-3	chr17	57341259	57342259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16927.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	121.85	105.98	85.1	114.7	52.25	102.08	110.9	123.36	97.43
Merged-chr15-99259689-1	chr15	99259189	99260189	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045627, intron 1 of 2)	intron (NR_045627, intron 1 of 2)	-7728.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	16.59	16.13	16.65	24.96	20.06	31.35	19.01	14.59	13.74
Merged-chrX-162829512-3	chrX	162829002	162830002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178935)	promoter-TSS (NM_178935)	-48.0	NM_001290778	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	31.46	41.93	23.12	26.31	32.19	36.97	41.19	42.01	26.23
Merged-chr11-62648488-1	chr11	62647988	62648988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	35.0	NM_198861	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	21.74	16.13	37.92	22.94	11.2	21.7	27.46	13.71	11.87
Merged-chr1-60343344-3	chr1	60342866	60343866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313721)	promoter-TSS (NM_001313721)	66.0	NM_001313721	77951.0	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	58.92	78.33	77.7	81.64	82.11	68.32	91.89	85.78	49.34
Merged-chr17-24736523-3	chr17	24736023	24737023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346668)	promoter-TSS (NM_001346668)	-70.0	NM_013759	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	154.45	138.7	94.35	156.53	96.57	124.59	154.2	204.72	109.29
Merged-chr4-11007806-3	chr4	11007311	11008311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-192.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	357.53	306.88	263.61	293.5	274.31	247.57	312.63	264.86	175.49
Merged-chr10-43541019-3	chr10	43540535	43541535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026411)	promoter-TSS (NM_026411)	-17.0	NM_026411	67851.0	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	58.35	49.3	38.85	45.21	34.99	52.25	47.53	37.14	23.73
Merged-chr2-132114707-3	chr2	132114210	132115210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	30398.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	121.28	149.29	84.17	118.08	109.16	95.65	155.26	201.19	84.94
Merged-chr1-92910717-3	chr1	92910217	92911217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	-28.0	NR_138577	75995.0	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	57.78	25.34	60.12	67.47	32.66	53.85	50.7	22.55	31.85
Merged-chr15-79409477-3	chr15	79408983	79409983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6180.0	NM_172608	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	179.05	140.54	120.24	190.27	108.23	101.28	147.87	159.18	87.43
Merged-chr12-3868276-3	chr12	3867793	3868793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6049.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	196.79	196.29	116.54	265.16	165.14	163.97	190.11	171.12	102.42
Merged-chr8-115307639-3	chr8	115307137	115308137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	399257.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	8.01	6.91	11.1	11.47	4.67	3.22	9.51	4.42	1.25
Merged-chr10-39418555-3	chr10	39418044	39419044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	48745.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	73.22	105.98	51.8	121.45	108.23	84.4	124.63	120.27	89.31
Merged-chr4-134287322-3	chr4	134286823	134287823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-70.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	79.52	70.96	86.95	74.22	86.77	123.78	106.67	79.15	70.57
Merged-chr4-55530333-3	chr4	55529839	55530839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2136.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	38.9	26.73	7.4	31.71	27.99	20.9	25.35	15.48	11.24
Merged-chr7-45457487-3	chr7	45456972	45457972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010240)	TTS (NM_010240)	2414.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	217.95	193.07	160.02	228.73	166.54	161.56	155.26	182.62	118.66
Merged-chr12-85110855-3	chr12	85110354	85111354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030225)	promoter-TSS (NM_030225)	21.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	387.85	392.59	320.96	308.35	354.08	327.95	277.78	317.92	205.47
Merged-chr8-56299602-3	chr8	56299120	56300120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	5068.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	101.83	120.26	59.2	73.54	63.45	53.85	99.28	109.66	58.08
Merged-chr13-54468851-3	chr13	54468368	54469368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028597)	promoter-TSS (NM_028597)	-28.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	63.5	64.51	75.85	51.28	45.72	52.25	92.94	89.76	31.85
Merged-chr3-105717000-3	chr3	105716499	105717499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175398, exon 2 of 2)	exon (NM_175398, exon 2 of 2)	11541.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	50.34	26.73	25.9	117.4	56.91	86.81	39.08	28.74	31.85
Merged-chr12-84192513-3	chr12	84192075	84193075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1440.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	147.02	82.94	138.74	105.93	74.64	86.01	103.51	112.75	83.06
Merged-chr16-31200517-3	chr16	31200023	31201023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	CpG	715.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	310.63	294.44	277.49	244.92	279.91	305.44	246.09	297.14	224.83
Merged-chr13-77708685-3	chr13	77708187	77709187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163419)	promoter-TSS (NM_001163419)	-3.0	NM_001163420	68675.0	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	76.08	86.63	49.95	87.71	80.24	53.05	92.94	84.01	38.1
Merged-chr4-148656163-3	chr4	148655629	148656629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	12812.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	29.17	34.56	30.52	24.29	25.19	17.68	57.03	65.88	48.71
Merged-chr1-64303072-3	chr1	64302583	64303583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-181694.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	223.67	247.9	172.97	181.5	194.07	201.75	213.35	278.12	154.26
Merged-chr1-161251250-3	chr1	161250742	161251742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-32.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	46.34	42.39	14.8	43.86	33.12	24.92	65.48	49.08	18.11
Merged-chr5-115134925-3	chr5	115134413	115135413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175352)	promoter-TSS (NM_175352)	62.0	NM_175352	106840.0	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	9.72	4.61	9.25	15.52	3.73	12.86	5.28	3.98	3.75
Merged-chr6-113654285-3	chr6	113653766	113654766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	15799.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	124.71	102.29	34.22	145.06	83.51	80.38	97.17	91.97	36.22
Merged-chr1-79761764-3	chr1	79761259	79762259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111279)	promoter-TSS (NM_001111279)	10.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	120.7	121.65	83.25	141.02	130.16	86.81	180.61	179.52	86.81
Merged-chr4-88693640-3	chr4	88693146	88694146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2378.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	33.75	29.49	25.9	20.24	9.8	11.25	16.9	13.71	10.62
Merged-chr17-5935957-1	chr17	5935457	5936457	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-5323.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	113.27	101.83	54.57	98.51	80.71	102.08	129.91	130.88	88.06
Merged-chr17-5936435-3	chr17	5935952	5936952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4828.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	112.12	99.99	70.3	85.01	75.11	109.32	127.8	118.06	69.32
Merged-chr9-79759796-3	chr9	79759314	79760314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009945)	promoter-TSS (NM_009945)	39.0	NM_009945	12866.0	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	120.7	138.7	119.32	137.64	129.22	137.45	146.81	138.4	106.17
Merged-chr9-64914786-3	chr9	64914283	64915283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 34 of 34)	intron (NM_001162917, intron 34 of 34)	36824.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	42.33	43.77	31.45	39.81	26.12	18.49	64.43	70.75	34.97
Merged-chr1-84240367-3	chr1	84239865	84240865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-21404.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	53.2	73.26	43.47	40.48	37.32	36.17	55.98	62.35	39.35
Merged-chr10-80387805-3	chr10	80387320	80388320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198615)	promoter-TSS (NM_198615)	-169.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	81.8	52.99	44.4	88.39	60.65	61.09	79.21	64.56	36.22
Merged-chr3-88336350-3	chr3	88335858	88336858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	98.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	169.9	132.25	111.92	129.55	128.76	144.68	194.34	128.23	117.41
Merged-chr6-24645524-3	chr6	24645034	24646034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	19461.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	40.62	67.27	42.55	56.68	41.99	55.46	45.42	37.58	35.6
Merged-chr10-51480563-3	chr10	51480063	51481063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291893)	promoter-TSS (NM_001291893)	-49.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	189.92	185.7	108.22	269.89	209.0	208.18	185.89	248.94	122.41
Merged-chr12-8521608-3	chr12	8521118	8522118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17948.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	132.72	140.54	72.15	121.45	141.35	114.14	140.47	160.51	53.71
Merged-chr6-97439139-3	chr6	97438648	97439648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	20138.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	156.17	146.07	116.54	163.96	138.09	126.19	146.81	160.95	92.43
Merged-chr2-91096729-3	chr2	91096243	91097243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011355)	promoter-TSS (NM_011355)	65.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	453.64	486.59	305.23	389.31	403.53	303.83	392.9	432.44	224.21
Merged-chr9-7871864-3	chr9	7871364	7872364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	1306.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	336.37	348.35	233.09	302.27	250.98	246.76	374.95	393.53	184.86
Merged-chr8-25108936-3	chr8	25108455	25109455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155282, intron 1 of 1)	intron (NR_155282, intron 1 of 1)	6776.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	81.8	82.94	54.57	103.91	57.38	66.71	70.76	72.52	51.21
Merged-chr16-35363904-3	chr16	35363398	35364398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133704)	promoter-TSS (NM_133704)	20.0	NM_133704	317717.0	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	94.96	104.6	57.35	81.64	82.11	53.05	90.83	62.35	42.47
Merged-chr14-49172090-3	chr14	49171568	49172568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027492)	promoter-TSS (NM_027492)	-178.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	54.35	41.47	55.5	59.38	35.45	40.19	85.55	32.72	24.98
Merged-chr5-109923561-3	chr5	109923041	109924041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10022.0	NR_040366	100642166.0		NR_040366	ENSMUSG00000090015	Gm15446	-	predicted gene 15446	ncRNA	21.17	13.82	13.87	14.84	23.79	27.33	17.96	20.34	23.11
Merged-chr17-55879032-3	chr17	55878556	55879556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144546)	promoter-TSS (NM_144546)	-103.0	NM_144546	104349.0	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	74.94	74.65	110.99	86.36	83.04	116.55	91.89	85.78	68.07
Merged-chr18-12926606-1	chr18	12926106	12927106	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15235.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	20.59	23.96	16.65	24.29	24.26	12.06	36.97	30.51	14.99
Merged-chr14-75845204-3	chr14	75844728	75845728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	-28.0	NM_009429	22070.0	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	538.87	420.7	334.83	493.22	389.07	345.63	381.28	330.74	226.7
Merged-chr18-11939830-1	chr18	11939330	11940330	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 7 of 8)	intron (NM_022021, intron 7 of 8)	-99392.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	17.16	11.06	12.95	24.96	17.26	20.9	9.51	6.63	1.87
Merged-chr7-127935511-3	chr7	127935001	127936001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319147, intron 10 of 14)	CpG	-5388.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	22.88	22.12	11.1	46.56	24.72	47.42	13.73	22.55	31.85
Merged-chr8-117198328-3	chr8	117197838	117198838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	40203.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	75.51	41.01	24.05	60.72	33.12	37.78	36.97	35.82	17.49
Merged-chr17-22866501-3	chr17	22865990	22866990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177358, intron 1 of 5)	intron (NM_177358, intron 1 of 5)	644.0	NM_177358	240041.0	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	56.06	86.17	93.42	70.17	78.37	63.5	82.38	108.77	49.34
Merged-chr10-18023030-3	chr10	18022512	18023512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359560)	promoter-TSS (NM_001359560)	78.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	187.63	193.99	174.82	178.8	194.07	188.89	211.24	156.09	91.81
Merged-chr4-136020829-3	chr4	136020329	136021329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	820.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	147.59	158.97	161.87	136.29	160.01	127.0	140.47	174.66	105.55
Merged-chr17-25773725-3	chr17	25773234	25774234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026238)	promoter-TSS (NM_026238)	-42.0	NM_026238	67563.0	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	36.61	46.54	25.9	31.04	47.58	53.05	43.3	45.99	31.85
Merged-chr12-85437745-3	chr12	85437249	85438249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36141.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	50.34	39.17	15.72	56.0	43.85	28.13	33.8	24.76	23.11
Merged-chr9-90235012-3	chr9	90234507	90235507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	35762.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	185.35	115.2	82.32	230.75	114.29	139.86	159.48	143.7	99.3
Merged-chr16-32171161-3	chr16	32170646	32171646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5552.0	NM_001347181	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	203.65	135.47	129.49	192.97	118.49	151.92	164.76	134.42	71.2
Merged-chr8-69209015-3	chr8	69208523	69209523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013379)	promoter-TSS (NM_001013379)	-23.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	56.06	71.88	42.55	64.77	59.71	90.02	106.67	86.22	44.97
Merged-chr12-70968637-3	chr12	70968138	70969138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5985.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	256.85	266.79	212.74	244.25	212.26	228.28	280.95	294.04	191.73
Merged-chr1-75124944-4	chr1	75124485	75125485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194333)	TTS (NM_194333)	8905.0	NM_194333	22626.0	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	84.09	103.68	126.72	118.08	109.16	143.88	178.5	114.08	91.18
Merged-chr9-21616554-2	chr9	21616041	21617041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357764, intron 1 of 34)	CpG	372.0	NM_001174078	20586.0	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	BAF190A|Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	176.19	186.62	161.87	182.85	189.4	146.29	191.17	175.54	98.05
Merged-chr14-12284231-3	chr14	12283736	12284736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146051)	promoter-TSS (NM_146051)	33.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	76.66	99.53	126.72	80.97	109.16	97.26	128.85	114.08	61.2
Merged-chr1-180587970-3	chr1	180587455	180588455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105869)	TTS (NR_105869)	754.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	12.01	5.07	4.62	24.96	7.0	24.92	16.9	15.92	8.12
Merged-chr13-51100997-3	chr13	51100496	51101496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	116.0	NM_146043	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	135.58	105.52	179.44	134.27	86.3	98.06	207.01	84.45	91.81
Merged-chr11-114907814-3	chr11	114907333	114908333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17792.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	290.03	223.02	136.89	273.26	139.49	134.23	197.51	195.88	99.92
Merged-chr5-103753574-3	chr5	103753065	103754065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133919)	promoter-TSS (NM_133919)	-597.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	475.38	552.94	326.51	378.52	398.86	340.81	395.01	533.25	254.18
Merged-chr12-33433977-3	chr12	33433460	33434460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172253, intron 2 of 3)	intron (NM_172253, intron 2 of 3)	4336.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	156.74	212.88	149.84	123.47	218.33	151.92	188.0	204.28	111.79
Merged-chr11-115161916-4	chr11	115161434	115162434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-1407.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	127.57	152.98	107.29	175.43	101.23	133.43	164.76	196.32	96.18
Merged-chr16-31066933-3	chr16	31066424	31067424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	14508.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	37.76	34.1	23.12	45.21	38.25	39.39	98.23	121.15	59.95
Merged-chr5-4853738-1	chr5	4853238	4854238	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-95522.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.72	9.22	3.7	9.45	8.4	10.45	6.34	5.31	4.37
Merged-chr8-72317817-3	chr8	72317302	72318302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	155.6	164.04	104.52	239.52	208.53	152.72	121.46	160.06	96.18
Merged-chr7-135699451-3	chr7	135698962	135699962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	16917.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	28.6	27.65	20.35	18.89	8.4	12.86	23.24	14.59	5.62
Merged-chr4_GL456216_random-13910-1	chr4_GL456216_random	13410	14410	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	-1971.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	45.42	64.11	0.0
Merged-chr6-54816637-3	chr6	54816109	54817109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199143)	promoter-TSS (NM_199143)	-307.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	163.61	95.84	120.24	138.99	68.11	106.1	124.63	72.96	80.56
Merged-chr5-135994843-3	chr5	135994333	135995333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023742)	promoter-TSS (NM_023742)	33.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	66.93	67.27	69.37	55.33	55.51	61.89	62.31	59.25	51.84
Merged-chr11-117993692-3	chr11	117993187	117994187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	6830.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	46.91	30.87	51.8	28.34	25.19	31.35	23.24	17.24	26.23
Merged-chr1-151599048-3	chr1	151598534	151599534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	27661.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	231.11	261.73	137.82	186.22	150.22	130.21	157.37	174.21	124.28
Merged-chr8-13338674-3	chr8	13338185	13339185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291766)	promoter-TSS (NM_001291766)	-66.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	43.48	26.73	29.6	62.75	38.25	44.21	104.56	22.11	27.48
Merged-chr3-153912977-3	chr3	153912488	153913488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163478)	promoter-TSS (NM_001163478)	-22.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	163.04	158.97	132.27	159.91	172.61	182.46	160.54	173.33	123.03
Merged-chr13-92483532-3	chr13	92483029	92484029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163627, intron 1 of 5)	B2_Mm2|SINE|B2	502.0	NM_001163627	73942.0	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	59.49	51.15	27.75	54.65	57.85	34.56	71.82	103.02	29.35
Merged-chr16-38711406-3	chr16	38710896	38711896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	1639.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	46.91	40.55	37.0	40.48	29.39	32.15	67.6	80.92	61.2
Merged-chr9-54586409-3	chr9	54585908	54586908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029573)	promoter-TSS (NM_029573)	-103.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	41.76	35.48	37.0	52.63	50.85	49.83	65.48	44.22	28.1
Merged-chr19-7494906-1	chr19	7494406	7495406	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	CpG	468.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	363.83	391.21	295.06	302.95	359.68	312.67	302.07	348.87	236.7
Merged-chr15-99973211-2	chr15	99972711	99973711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028124)	promoter-TSS (NR_028124)	76.0	NR_028124	70281.0	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	320.92	217.49	176.67	328.59	267.31	236.31	239.75	242.75	141.14
Merged-chr5-113114362-2	chr5	113113865	113114865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	24220.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	30.89	15.67	7.4	8.1	9.33	4.02	3.17	0.88	0.0
Merged-chr17-33978906-3	chr17	33978408	33979408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-117.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	169.33	105.52	62.9	247.62	168.41	117.35	214.41	234.35	113.66
Merged-chr13-23563336-3	chr13	23562884	23563884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1019.0	NM_178205	319151.0	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	159.03	220.25	149.84	168.68	161.88	180.85	189.06	252.92	154.88
Merged-chr18-38250390-3	chr18	38249936	38250936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015475)	promoter-TSS (NR_015475)	129.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	81.8	140.08	109.14	82.99	111.03	128.61	115.12	118.06	131.15
Merged-chr17-21679918-3	chr17	21679446	21680446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	69.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	109.83	127.64	77.7	99.18	110.56	94.85	118.29	119.83	94.3
Merged-chr6-13601777-3	chr6	13601273	13602273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	6325.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	105.83	102.29	53.65	82.99	51.78	66.71	59.15	57.92	32.48
Merged-chr11-50213180-3	chr11	50212683	50213683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2363.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	359.25	275.55	97.12	365.7	298.57	196.93	154.2	177.31	85.56
Merged-chr9-77828693-3	chr9	77828156	77829156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	74121.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	68.07	62.21	40.7	106.61	62.98	60.28	88.72	90.64	51.84
Merged-chr5-21035881-3	chr5	21035384	21036384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356590)	promoter-TSS (NM_001356590)	-637.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	181.34	174.18	72.15	207.14	129.69	116.55	226.02	290.5	106.17
Merged-chr9-46273118-3	chr9	46272625	46273625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011752)	promoter-TSS (NM_011752)	61.0	NM_011752	22687.0	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	122.42	146.99	136.89	141.69	122.23	144.68	159.48	137.07	74.94
Merged-chr7-114356666-3	chr7	114356172	114357172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029438, intron 3 of 4)	intron (NR_029438, intron 3 of 4)	58489.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	17.73	19.81	18.5	16.87	16.33	4.82	6.34	11.94	6.87
Merged-chr11-23498069-3	chr11	23497557	23498557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290655)	promoter-TSS (NM_001290655)	-18.0	NM_172391	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	114.98	88.47	81.4	94.46	96.1	75.56	86.61	57.92	44.34
Merged-chr3-37420320-3	chr3	37419818	37420818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291044)	promoter-TSS (NM_001291044)	368.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	467.37	442.35	345.01	362.32	417.06	294.99	374.95	448.8	226.08
Merged-chr5-32937145-3	chr5	32936660	32937660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	73439.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	76.66	91.7	70.3	70.17	52.72	90.02	90.83	105.68	59.95
Merged-chr17-32320807-3	chr17	32320298	32321298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017476)	TTS (NM_017476)	440.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	96.68	101.37	110.99	93.79	110.1	130.21	147.87	133.53	88.06
Merged-chr15-50772797-3	chr15	50772318	50773318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	116231.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	1.72	7.37	9.25	6.75	3.27	14.47	9.51	4.86	2.5
Merged-chr6-88106207-3	chr6	88105722	88106722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133933)	TTS (NM_133933)	-1964.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	15.45	18.43	11.1	10.8	10.73	19.29	13.73	11.94	9.37
Merged-chr9-108569885-3	chr9	108569375	108570375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026378)	promoter-TSS (NM_026378)	-17.0	NM_026378	67789.0	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	28.03	35.48	23.12	35.09	19.59	38.58	16.9	18.13	11.87
Merged-chr17-17882831-3	chr17	17882320	17883320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	1119.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	136.72	171.87	104.52	136.97	111.5	89.22	136.25	175.54	141.14
Merged-chr5-150621824-3	chr5	150621339	150622339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 6 of 7)	intron (NM_001362416, intron 6 of 7)	-27314.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	6.29	10.6	3.7	16.19	15.86	4.82	9.51	8.4	5.0
Merged-chr9-50711554-3	chr9	50711050	50712050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311069, intron 1 of 19)	intron (NM_001311069, intron 1 of 19)	16434.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	2.86	5.99	3.7	7.42	2.33	0.0	5.28	3.54	2.5
Merged-chr1-64189684-3	chr1	64189175	64190175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-68286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	74.94	89.39	63.82	93.11	58.78	69.93	67.6	70.75	41.84
Merged-chr14-31482554-3	chr14	31482054	31483054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359849, intron 4 of 4)	intron (NM_001359849, intron 4 of 4)	12204.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	59.49	51.15	46.25	70.17	52.72	70.73	60.2	43.33	34.35
Merged-chrUn_JH584304-49419-1	chrUn_JH584304	48919	49919	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10270.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	33.8	17.69	0.0
Merged-chr17-80563930-3	chr17	80563416	80564416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-82.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	343.23	379.23	150.77	266.51	255.18	165.58	190.11	264.42	101.17
Merged-chr19-6046525-3	chr19	6046035	6047035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-41.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	643.56	565.38	324.66	488.5	486.1	334.38	474.23	617.71	229.2
Merged-chr16-30873715-3	chr16	30873203	30874203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207729.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	68.65	109.67	71.22	67.47	91.44	83.59	111.96	132.21	103.05
Merged-chr4-125030002-3	chr4	125029503	125030503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145552)	promoter-TSS (NM_145552)	-11.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	122.42	144.23	77.7	112.0	131.56	63.5	129.91	102.14	68.7
Merged-chr11-58199495-3	chr11	58198990	58199990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018738)	promoter-TSS (NM_018738)	-66.0	NM_018738	16145.0	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	70.36	78.79	54.57	49.25	72.78	71.54	90.83	93.74	68.07
Merged-chr15-99398561-1	chr15	99398061	99399061	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	RSINE1|SINE|B4	5342.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	17.73	18.43	17.57	13.49	12.6	16.08	10.56	9.29	8.74
Merged-chr12-110979122-3	chr12	110978597	110979597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-57.0	NM_001361916	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	129.86	89.85	74.92	91.76	70.44	57.87	102.45	60.58	19.36
Merged-chr19-46618516-3	chr19	46618014	46619014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4887.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	61.21	65.89	52.72	76.92	55.98	68.32	111.96	103.91	71.2
Merged-chr3-104818598-3	chr3	104818094	104819094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008619)	promoter-TSS (NM_008619)	-31.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	141.3	110.13	108.22	138.99	98.43	102.08	155.26	159.62	73.07
Merged-chr6-57765620-3	chr6	57765115	57766115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	59510.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	194.5	177.4	105.44	186.9	112.9	106.9	147.87	156.53	93.05
Merged-chr2-6740159-3	chr2	6739652	6740652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-18490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	26.89	13.82	7.4	26.99	20.99	17.68	15.84	16.36	16.86
Merged-chr2-118554888-1	chr2	118554388	118555388	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-5202.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.86	1.84	3.7	3.37	3.27	1.61	77.1	67.21	40.59
Merged-chr12-102748323-3	chr12	102747832	102748832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4572.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	162.46	175.56	116.54	145.74	169.81	117.35	188.0	234.79	111.17
Merged-chr9-13749191-3	chr9	13748706	13749706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	25.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	253.42	276.93	227.54	263.81	249.12	236.31	274.61	246.73	139.27
Merged-chr5-124112134-5	chr5	124111602	124112602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025671)	promoter-TSS (NM_025671)	-219.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	152.74	155.28	81.4	129.55	108.23	92.44	158.43	151.22	74.32
Merged-chr11-70982996-3	chr11	70982503	70983503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007573)	promoter-TSS (NM_007573)	23.0	NM_007573	12261.0	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	84.09	55.75	38.85	110.65	89.1	77.16	84.49	61.46	44.34
Merged-chr1-155973360-3	chr1	155972867	155973867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039184)	promoter-TSS (NM_001039184)	-112.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	286.03	231.77	191.47	259.77	191.73	213.81	243.98	194.11	126.15
Merged-chr13-119462700-3	chr13	119462167	119463167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-92.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	116.7	164.04	110.99	101.21	138.09	129.41	120.41	156.97	108.04
Merged-chr15-64234580-3	chr15	64234097	64235097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	78076.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	68.07	80.64	58.27	62.07	65.31	68.32	85.55	98.6	44.97
Merged-chr11-114793120-3	chr11	114792623	114793623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028055, intron 2 of 2)	intron (NM_028055, intron 2 of 2)	2769.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	10.87	7.37	3.7	12.82	7.46	4.82	12.67	14.59	3.75
Merged-chr13-113615182-3	chr13	113614678	113615678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3386.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	278.02	280.62	144.29	311.72	282.7	188.09	226.02	318.36	176.74
Merged-chr2-165882031-3	chr2	165881512	165882512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	266.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	216.81	146.53	120.24	197.69	124.09	122.18	178.5	163.6	93.68
Merged-chr7-127233160-3	chr7	127232655	127233655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030674)	promoter-TSS (NR_030674)	-25.0	NR_030674	100043580.0	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	42.33	26.26	49.02	57.35	49.92	61.89	72.88	43.33	37.47
Merged-chr17-3557714-5	chr17	3557076	3558076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045302)	promoter-TSS (NR_045302)	137.0	NM_146074	224481.0	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	73.79	76.95	61.97	42.51	85.37	71.54	68.65	93.74	45.59
Merged-chr1-160212954-3	chr1	160212454	160213454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-62.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	259.14	243.29	188.69	281.36	292.5	210.59	207.01	244.52	154.88
Merged-chr18-24020876-3	chr18	24020397	24021397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021559)	promoter-TSS (NM_021559)	-84.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	134.43	125.79	104.52	148.44	113.83	119.76	89.78	64.11	63.7
Merged-chr5-52741583-3	chr5	52741081	52742081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025951)	promoter-TSS (NM_025951)	7.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	62.35	55.29	41.62	65.45	66.24	45.01	66.54	37.58	23.11
Merged-chr9-104269471-3	chr9	104268958	104269958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6528.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	53.2	54.83	39.77	44.53	30.32	41.8	67.6	55.71	65.58
Merged-chr4-3685360-3	chr4	3684826	3685826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	7205.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	74.37	53.91	67.52	82.99	42.92	75.56	86.61	90.2	87.43
Merged-chr11-59526875-3	chr11	59526375	59527375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14694.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	62.93	61.75	49.02	82.99	60.65	94.04	51.75	96.39	83.69
Merged-chr5-36530579-3	chr5	36530075	36531075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113364)	promoter-TSS (NM_001113364)	48.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	38.33	36.86	35.15	56.68	21.93	41.8	30.63	26.09	22.48
Merged-chr12-100116210-3	chr12	100115713	100116713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008947, intron 5 of 9)	intron (NM_008947, intron 5 of 9)	3882.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	84.09	69.58	55.5	80.29	52.72	69.93	49.64	69.86	53.08
Merged-chr10-128673993-3	chr10	128673480	128674480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173733)	promoter-TSS (NM_173733)	-62.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	77.8	71.88	55.5	90.41	59.25	67.52	85.55	84.9	58.71
Merged-chr3-116482909-3	chr3	116482411	116483411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25264.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	25.74	25.8	12.95	14.17	9.33	20.9	13.73	19.01	9.37
Merged-chr7-90214210-3	chr7	90213704	90214704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51228.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	30.89	37.32	17.57	37.11	28.46	21.7	57.03	46.43	21.23
Merged-chr6-143167718-2	chr6	143167207	143168207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	CpG	477.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	253.99	200.44	221.99	219.28	152.08	156.74	269.33	172.45	99.3
Merged-chr2-5012817-3	chr2	5012305	5013305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305259)	promoter-TSS (NM_001305259)	-14.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	34.9	24.42	39.77	29.69	23.33	36.97	48.58	32.72	29.35
Merged-chr11-77607964-3	chr11	77607464	77608464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144825)	promoter-TSS (NM_144825)	-149.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	227.11	196.29	168.34	232.78	169.81	159.15	210.18	138.4	133.02
Merged-chr1-156615760-3	chr1	156615257	156616257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	56970.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	60.07	53.91	21.27	147.09	120.36	94.04	67.6	53.94	23.11
Merged-chr15-43282723-3	chr15	43282226	43283226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008388)	promoter-TSS (NM_008388)	10.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	177.91	218.87	122.09	169.35	196.87	150.31	161.6	160.51	69.32
Merged-chr18-53877629-3	chr18	53877129	53878129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	intron (NM_152809, intron 1 of 12)	15516.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	40.04	59.44	37.0	66.12	64.38	42.6	57.03	54.83	16.24
Merged-chr18-31789066-3	chr18	31788564	31789564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357480)	promoter-TSS (NM_001357480)	-61.0	NM_001357480	69241.0	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	79.52	60.82	60.12	66.8	43.85	68.32	62.31	59.25	32.48
Merged-chr6-4600949-4	chr6	4600443	4601443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145398)	promoter-TSS (NM_145398)	-123.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	86.95	68.2	64.75	69.5	82.57	62.7	79.21	45.1	28.1
Merged-chr19-12796272-3	chr19	12795762	12796762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024093)	promoter-TSS (NR_024093)	69.0	NM_001361971	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	562.33	501.33	398.65	462.86	443.65	372.15	428.81	512.03	261.05
Merged-chr6-124478157-3	chr6	124477661	124478661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13377.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	200.22	187.54	80.47	221.31	159.08	83.59	182.72	161.83	72.45
Merged-chr5-22550397-3	chr5	22549903	22550903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	-10.0	NR_102315	320719.0	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	102.97	142.38	97.12	126.85	139.02	131.82	141.53	147.24	89.93
Merged-chr4-14864222-3	chr4	14863721	14864721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	2.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	204.8	144.23	143.37	210.51	153.48	140.66	192.23	150.78	112.42
Merged-chr19-41802102-3	chr19	41801596	41802596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163495)	promoter-TSS (NM_001163495)	-12.0	NM_027667	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	33.75	19.81	7.4	20.92	19.13	18.49	35.91	15.48	16.24
Merged-chr6-83482597-3	chr6	83482094	83483094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 4 of 6)	L2b|LINE|L2	24375.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	58.92	67.27	49.02	87.71	59.25	69.13	55.98	57.04	53.08
Merged-chr2-68873296-3	chr2	68872793	68873793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	11852.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	40.04	27.65	24.05	37.11	23.33	32.96	42.25	44.22	26.85
Merged-chr14-54686227-3	chr14	54685739	54686739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021437)	promoter-TSS (NM_021437)	68.0	NM_021437	58248.0	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	187.63	206.89	223.84	205.79	219.73	178.44	237.64	227.72	145.51
Merged-chr7-144581782-3	chr7	144581375	144582375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010175, intron 1 of 1)	intron (NM_010175, intron 1 of 1)	561.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	104.69	127.18	184.07	116.73	150.68	144.68	172.16	148.57	94.93
Merged-chr13-23571314-3	chr13	23570847	23571847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	-53.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	179.62	164.5	153.54	173.4	158.15	208.98	116.18	163.16	125.53
Merged-chr17-29347871-3	chr17	29347355	29348355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019880)	promoter-TSS (NM_019880)	77.0	NM_019880	56462.0	Mm.3224	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	69.22	47.92	78.62	69.5	41.05	46.62	74.99	36.7	32.48
Merged-chr4-99120521-3	chr4	99120025	99121025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	CpG	390.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	90.38	56.22	65.67	85.01	60.65	77.16	144.7	42.45	38.1
Merged-chr12-40038064-3	chr12	40037537	40038537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007487)	promoter-TSS (NM_007487)	-50.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	157.31	150.22	65.67	194.99	139.95	66.71	126.74	75.61	56.83
Merged-chr9-57557451-3	chr9	57556961	57557961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3483.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	98.39	108.28	71.22	78.27	64.84	79.58	120.41	104.35	68.07
Merged-chr19-6297829-3	chr19	6297315	6298315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 4 of 4)	intron (NM_010119, intron 4 of 4)	-8642.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	311.77	267.25	199.79	292.83	204.8	224.26	265.1	348.43	159.25
Merged-chr5-122900436-3	chr5	122899937	122900937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-87.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	166.47	55.75	84.17	144.39	38.25	44.21	84.49	35.82	34.97
Merged-chr2-52772601-3	chr2	52772114	52773114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-30465.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	6.86	10.14	3.7	16.19	12.6	12.86	15.84	10.17	4.37
Merged-chr9-59537888-3	chr9	59537375	59538375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1665.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	18.88	25.8	37.92	24.96	27.52	28.13	15.84	16.8	29.98
Merged-chr11-4160310-3	chr11	4159843	4160843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164620)	promoter-TSS (NM_001164620)	-11.0	NM_026175	67465.0	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	86.38	68.66	52.72	56.68	59.71	63.5	71.82	44.22	51.84
Merged-chr4-128711615-3	chr4	128711098	128712098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 6 of 14)	intron (NM_018774, intron 6 of 14)	-15973.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	10.3	5.99	9.25	10.12	5.13	8.04	12.67	7.52	2.5
Merged-chr12-69502544-2	chr12	69502035	69503035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26985.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	186.49	156.21	135.04	228.73	188.47	176.03	172.16	200.74	53.71
Merged-chr19-55741723-3	chr19	55741240	55742240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-70.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	153.31	87.09	140.59	138.32	64.38	97.26	115.12	107.45	98.05
Merged-chr13-117024648-4	chr13	117024142	117025142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 2 of 26)	CpG	874.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	173.33	117.04	69.37	134.94	62.98	86.81	133.08	92.41	51.84
Merged-chr17-50513568-1	chr17	50513068	50514068	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	4021.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	22.31	25.34	6.47	23.62	23.79	14.47	23.24	25.65	7.49
Merged-chr10-67290779-3	chr10	67290273	67291273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5492.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	121.85	93.54	91.57	170.03	92.37	84.4	168.99	188.36	86.18
Merged-chr19-46503808-3	chr19	46503312	46504312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2164.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	280.31	205.97	214.59	257.74	153.48	194.52	222.86	207.38	138.02
Merged-chr7-45459874-3	chr7	45459370	45460370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010240)	promoter-TSS (NM_010240)	16.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	306.62	201.36	116.54	291.48	202.93	150.31	231.3	236.56	101.8
Merged-chr1-182935601-3	chr1	182935093	182936093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19195.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	48.62	50.69	64.75	31.04	20.53	19.29	22.18	20.78	13.12
Merged-chr1-95313635-3	chr1	95313149	95314149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026321)	promoter-TSS (NM_026321)	21.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	335.22	342.36	271.94	322.51	328.42	238.73	278.83	269.28	155.51
Merged-chr6-85915978-6	chr6	85915463	85916463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023160)	promoter-TSS (NM_023160)	-8.0	NM_001362065	69786.0	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	120.7	126.25	96.2	149.11	135.29	136.64	134.14	142.82	71.82
Merged-chr19-4756493-3	chr19	4755984	4756984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-41.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	361.54	338.22	226.61	351.53	294.37	219.43	332.7	313.5	174.24
Merged-chr12-3981535-3	chr12	3981045	3982045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082483, intron 10 of 22)	intron (NM_001082483, intron 10 of 22)	26600.0	NM_001278583	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	12.01	6.91	2.77	20.92	5.6	12.86	19.01	7.07	7.49
Merged-chr11-106999611-3	chr11	106999109	107000109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010655)	promoter-TSS (NM_010655)	-84.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	49.77	57.14	44.4	61.4	55.05	89.22	82.38	85.34	57.46
Merged-chr4-141538847-3	chr4	141538347	141539347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019763)	promoter-TSS (NM_019763)	-250.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	165.32	124.87	108.22	157.21	79.31	88.42	163.71	136.19	61.83
Merged-chr2-4508151-3	chr2	4507670	4508670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-51584.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	136.72	149.29	90.65	114.7	105.9	78.77	144.7	172.89	104.92
Merged-chr1-193173109-2	chr1	193172610	193173610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181048)	promoter-TSS (NM_181048)	-359.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	91.53	89.39	74.0	87.71	83.97	88.42	88.72	107.89	66.82
Merged-chr2-21029845-3	chr2	21029343	21030343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60969.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	2.86	5.99	5.55	15.52	4.67	4.82	4.22	4.86	8.74
Merged-chr8-61920599-3	chr8	61920090	61921090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7497.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	155.6	198.6	75.85	191.62	221.13	141.47	190.11	271.05	112.42
Merged-chr5-124327594-3	chr5	124327095	124328095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	377.0	NM_001081323	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	82.95	94.0	87.87	105.93	99.37	102.88	97.17	95.95	70.57
Merged-chr11-34010008-1	chr11	34009508	34010508	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-16815.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	108.12	102.29	138.74	82.99	69.04	144.68	106.67	84.45	94.93
Merged-chr8-109693358-3	chr8	109692861	109693861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-67.0	NM_001361562	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	467.94	420.7	287.66	490.52	416.13	335.18	442.54	422.71	245.44
Merged-chr5-30040059-3	chr5	30039553	30040553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26939.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	38.33	26.73	15.72	35.09	15.39	15.27	17.96	13.27	13.12
Merged-chr4-155178470-3	chr4	155177957	155178957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	44078.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	50.91	29.03	13.87	60.72	32.66	24.11	31.69	23.88	11.24
Merged-chr14-76081969-2	chr14	76081466	76082466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28849.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	37.18	33.64	47.17	46.56	33.12	55.46	71.82	76.49	34.35
Merged-chr7-49397917-1	chr7	49397417	49398417	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	intron (NM_175272, intron 3 of 37)	151728.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.0	1.38	1.85	6.75	12.6	0.0	3.17	0.0	6.25
Merged-chr11-46265571-3	chr11	46265068	46266068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 13 of 30)	Lx8|LINE|L1	30011.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	58.92	67.74	49.02	96.48	118.49	63.5	77.1	90.2	72.45
Merged-chr4-44981440-3	chr4	44980945	44981945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312880)	promoter-TSS (NM_001312880)	51.0	NM_001312880	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	16.59	27.19	25.9	35.09	45.72	32.96	45.42	23.88	26.23
Merged-chr4-43470483-3	chr4	43469982	43470982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13227.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	82.95	73.26	84.17	107.28	79.77	86.01	80.27	92.41	78.07
Merged-chr6-83038843-3	chr6	83038347	83039347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	4623.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	51.48	37.32	27.75	51.28	32.66	44.21	81.33	68.09	49.34
Merged-chr1-170796000-3	chr1	170795507	170796507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71764.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	48.05	47.92	32.37	49.25	37.79	54.66	29.57	46.43	29.98
Merged-chr18-34855431-3	chr18	34854938	34855938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5769.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	105.83	73.73	103.59	85.69	88.64	82.79	193.28	196.76	92.43
Merged-chr17-47611540-3	chr17	47611037	47612037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	-45.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	223.67	205.05	111.92	179.47	168.41	148.7	241.87	221.97	79.94
Merged-chr3-31106721-3	chr3	31106221	31107221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	11663.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	164.75	142.84	89.72	161.93	103.56	131.02	156.32	142.38	79.32
Merged-chr12-117843740-3	chr12	117843236	117844236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146040)	promoter-TSS (NM_146040)	-125.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	19.45	17.97	27.75	26.31	14.0	14.47	42.25	19.01	6.25
Merged-chr14-120453805-3	chr14	120453307	120454307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-24654.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	26.89	22.12	12.95	37.78	23.79	29.74	33.8	26.53	6.25
Merged-chr17-34024717-3	chr17	34024199	34025199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009066)	promoter-TSS (NM_009066)	-19.0	NM_009066	19763.0	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	459.93	335.45	224.76	466.23	312.56	280.52	353.82	301.56	159.25
Merged-chr15-101269265-1	chr15	101268765	101269765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	B3A|SINE|B2	2419.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	9.72	2.3	1.85	2.7	1.87	2.41	5.28	3.1	7.49
Merged-chr11-29707037-3	chr11	29706536	29707536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-11527.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	53.77	81.1	41.62	66.8	62.98	73.95	71.82	95.07	65.58
Merged-chr7-25705883-3	chr7	25705371	25706371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011577)	TTS (NM_011577)	13182.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	245.98	185.7	199.79	253.02	158.61	213.0	218.63	227.72	174.87
Merged-chr1-39614590-3	chr1	39614095	39615095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36587.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	72.08	55.75	49.02	43.86	34.99	76.36	62.31	38.91	79.94
Merged-chr6-142387128-3	chr6	142386632	142387632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204907)	promoter-TSS (NM_001204907)	-45.0	NM_023042	19691.0	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	176.19	148.83	99.89	158.56	139.95	102.88	174.27	138.4	71.2
Merged-chr3-146616750-3	chr3	146616241	146617241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009474, intron 4 of 7)	intron (NM_009474, intron 4 of 7)	-1143.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	17.73	5.99	12.95	18.89	14.46	16.88	9.51	4.86	12.49
Merged-chr13-29984407-3	chr13	29983888	29984888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289920)	promoter-TSS (NM_001289920)	3.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	275.73	221.18	229.39	221.31	186.14	164.78	247.15	194.11	124.91
Merged-chr5-66062597-3	chr5	66062112	66063112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	MIRb|SINE|MIR	35567.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	65.79	61.75	41.62	95.81	69.04	38.58	73.93	82.69	49.96
Merged-chr2-84715297-3	chr2	84714767	84715767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144887)	promoter-TSS (NM_144887)	-103.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	266.0	207.81	259.91	250.32	148.82	203.36	271.44	241.42	134.27
Merged-chr12-37242708-3	chr12	37242202	37243202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 1 of 12)	intron (NM_178767, intron 1 of 12)	1063.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	85.81	164.96	34.22	109.3	135.29	70.73	105.62	233.91	79.94
Merged-chr1-120121148-3	chr1	120120654	120121654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172074)	promoter-TSS (NM_001172074)	-33.0	NM_028439	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	80.66	95.84	86.02	68.82	104.5	102.08	104.56	111.43	80.56
Merged-chr10-86727822-3	chr10	86727324	86728324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003910, intron 4 of 15)	intron (NM_001003910, intron 4 of 15)	15059.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	30.32	25.34	26.82	29.69	35.92	49.03	35.91	36.26	34.35
Merged-chr14-63860294-3	chr14	63859793	63860793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028228)	promoter-TSS (NM_028228)	-19.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	69.22	76.49	63.82	64.77	70.91	93.24	94.0	62.35	53.08
Merged-chr16-64770989-3	chr16	64770478	64771478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	-39.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	139.01	116.58	85.1	134.27	106.36	90.83	142.59	118.06	68.07
Merged-chr4-141560134-3	chr4	141559645	141560645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13983.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	131.0	140.54	74.0	145.74	153.95	89.22	166.88	197.65	68.07
Merged-chr10-95324072-3	chr10	95323558	95324558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330175)	promoter-TSS (NM_001330175)	79.0	NM_001330141	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	175.62	227.63	184.99	216.58	206.66	197.73	226.02	275.03	153.63
Merged-chr11-54884611-3	chr11	54884104	54885104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	18221.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	133.86	166.34	138.74	166.66	213.66	212.2	189.06	212.24	124.28
Merged-chr2-180582681-3	chr2	180582157	180583157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151482, exon 2 of 5)	non-coding (NR_151482, exon 2 of 5)	1435.0	NR_151482	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	92.67	82.02	75.85	79.62	75.11	77.97	77.1	67.21	76.82
Merged-chr7-102248731-3	chr7	102248228	102249228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	1390.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	100.11	120.26	134.12	101.21	67.18	129.41	109.84	118.06	123.66
Merged-chr10-80677317-3	chr10	80676822	80677822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1029.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	769.41	759.83	400.5	734.77	757.61	450.93	610.48	912.63	352.86
Merged-chr2-160068986-3	chr2	160068474	160069474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52321.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	135.58	147.45	72.15	157.88	153.48	132.63	71.82	60.58	49.96
Merged-chr12-3420700-3	chr12	3420178	3421178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	6069.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	25.17	32.25	24.05	32.39	20.99	21.7	32.74	34.93	39.97
Merged-chr2-129320179-3	chr2	129319687	129320687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10215.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	93.82	79.72	51.8	99.86	60.18	61.09	60.2	67.21	34.35
Merged-chr17-14943152-3	chr17	14942645	14943645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083880)	promoter-TSS (NM_001083880)	-21.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	113.84	82.02	78.62	93.79	70.44	72.34	87.66	69.86	69.95
Merged-chr4-43669294-3	chr4	43668809	43669809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175517)	promoter-TSS (NM_175517)	338.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	99.54	67.27	47.17	97.83	80.71	81.99	138.36	73.4	27.48
Merged-chr17-34157101-3	chr17	34156601	34157601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010387, intron 2 of 5)	intron (NM_010387, intron 2 of 5)	3910.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	7.44	10.14	22.2	14.84	4.67	9.65	22.18	11.94	20.61
Merged-chr19-56748095-3	chr19	56747597	56748597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25725.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	106.4	102.75	94.35	138.32	85.84	127.8	130.97	122.92	89.31
Merged-chr12-79017469-3	chr12	79016976	79017976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10199.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	42.9	49.76	46.25	130.22	95.17	146.29	60.2	60.13	59.95
Merged-chr18-60744795-3	chr18	60744314	60745314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1932.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	101.25	89.39	87.87	109.3	65.78	78.77	97.17	103.91	54.96
Merged-chr5-115158333-3	chr5	115157823	115158823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-147.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	331.79	273.71	150.77	338.71	290.17	213.0	260.88	284.31	124.28
Merged-chr19-41774261-3	chr19	41773752	41774752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	intron (NM_027667, intron 9 of 11)	27291.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	130.43	126.25	82.32	129.55	99.37	97.26	266.16	271.05	125.53
Merged-chr1-177483769-3	chr1	177483260	177484260	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	37939.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	14.87	5.53	1.85	9.45	4.67	1.61	8.45	15.03	6.25
Merged-chr12-76370432-3	chr12	76369938	76370938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172104)	promoter-TSS (NM_001172104)	172.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	415.88	429.91	483.75	400.11	385.34	421.19	371.78	363.9	324.13
Merged-chr11-117654667-3	chr11	117654177	117655177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_198022, exon 1 of 22)	5' UTR (NM_198022, exon 1 of 22)	388.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	156.17	76.03	123.94	155.19	84.9	130.21	170.05	59.69	54.33
Merged-chr12-83958513-3	chr12	83958006	83959006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7898.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	17.73	8.75	10.17	12.82	11.66	26.53	23.24	19.46	10.62
Merged-chr11-60210524-3	chr11	60210023	60211023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-52.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	207.08	167.26	91.57	197.02	153.01	119.76	188.0	202.07	36.22
Merged-chr10-122054625-3	chr10	122054131	122055131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7316.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	33.75	26.26	10.17	44.53	41.05	26.53	36.97	38.91	16.24
Merged-chr16-90215433-3	chr16	90214933	90215933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5309.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	125.28	126.25	98.05	128.87	85.84	107.71	92.94	128.67	76.19
Merged-chr7-43782673-3	chr7	43782167	43783167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133712, intron 2 of 5)	intron (NM_133712, intron 2 of 5)	1613.0	NM_133712	69540.0	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	6.29	4.61	0.0	4.72	2.8	1.61	6.34	5.31	2.5
Merged-chr5-100040453-1	chr5	100039953	100040953	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163035, intron 1 of 6)	intron (NM_001163035, intron 1 of 6)	459.0	NR_027990	67870.0	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	141.3	138.7	83.25	157.21	142.75	142.27	143.64	110.98	89.31
Merged-chr8-46152515-3	chr8	46152012	46153012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-11139.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	45.19	27.65	20.35	59.38	23.79	31.35	49.64	26.53	21.86
Merged-chr3-20304954-3	chr3	20304451	20305451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29218.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	32.04	34.56	24.05	31.04	22.86	54.66	32.74	34.49	28.73
Merged-chr10-75512681-3	chr10	75512172	75513172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	4709.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	90.38	64.51	49.95	80.29	57.85	42.6	104.56	81.8	71.2
Merged-chr6-42396608-3	chr6	42396102	42397102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3636.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	247.13	223.02	117.47	208.49	156.28	128.61	160.54	216.22	113.04
Merged-chr3-116162351-3	chr3	116161859	116162859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32671.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	54.92	70.5	81.4	62.75	77.44	64.3	70.76	65.88	32.48
Merged-chr17-84790791-3	chr17	84790284	84791284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028233)	promoter-TSS (NM_028233)	2.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	259.14	252.97	127.64	267.19	267.78	170.4	266.16	249.38	121.78
Merged-chr13-75839829-3	chr13	75839314	75840314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360151)	promoter-TSS (NM_001360151)	-71.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	82.38	91.24	77.7	77.59	65.78	80.38	51.75	50.85	44.97
Merged-chr2-181678971-3	chr2	181678482	181679482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1315.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	6.29	8.29	0.0	4.05	5.6	4.82	4.22	5.31	5.0
Merged-chr8-92822553-3	chr8	92822063	92823063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4734.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	13.16	9.22	0.0	6.07	4.2	11.25	28.52	24.32	8.74
Merged-chrX-7764026-6	chrX	7763514	7764514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271491)	promoter-TSS (NM_001271491)	-27.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	145.87	116.58	112.84	187.57	132.49	192.11	115.12	99.93	82.44
Merged-chrX-77795978-3	chrX	77795502	77796502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016979)	promoter-TSS (NM_016979)	-42.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	159.6	173.25	141.52	172.73	174.94	167.99	154.2	158.74	84.31
Merged-chr1-78657795-3	chr1	78657309	78658309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028817)	promoter-TSS (NM_028817)	-16.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	103.54	103.22	61.05	101.21	82.11	93.24	77.1	44.66	42.47
Merged-chr4-132794944-3	chr4	132794450	132795450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	intron (NM_001033308, intron 1 of 5)	1414.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	413.59	279.7	227.54	365.7	210.86	200.14	414.02	485.06	173.62
Merged-chr13-67500528-3	chr13	67500044	67501044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007575)	promoter-TSS (NM_001007575)	-22.0	NM_001007575	238693.0	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	36.04	38.71	34.22	31.04	35.45	33.76	39.08	38.03	28.73
Merged-chr9-50528633-3	chr9	50528103	50529103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011220)	promoter-TSS (NM_011220)	38.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	141.3	124.87	84.17	131.57	114.29	88.42	166.88	129.55	60.58
Merged-chr7-47070202-3	chr7	47069716	47070716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	13008.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	128.14	77.41	61.05	115.38	73.24	81.18	148.92	144.59	42.47
Merged-chr2-26483380-3	chr2	26482884	26483884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13265.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	304.33	240.53	175.74	271.91	175.87	194.52	184.83	224.18	109.92
Merged-chr2-27679881-3	chr2	27679374	27680374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	2673.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	120.13	140.54	94.35	165.98	174.94	131.82	171.1	178.19	106.17
Merged-chr14-55089357-3	chr14	55088842	55089842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	2706.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	53.77	61.75	23.12	74.89	55.98	36.17	50.7	40.68	27.48
Merged-chr2-128803597-3	chr2	128803092	128804092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008587)	TTS (NM_008587)	-14711.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	73.22	43.31	60.12	107.95	50.38	62.7	61.26	62.79	31.85
Merged-chr13-12395254-3	chr13	12394719	12395719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144835)	promoter-TSS (NM_144835)	-156.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	97.25	94.46	86.95	104.58	99.83	113.33	130.97	136.63	63.7
Merged-chr2-124622205-3	chr2	124621694	124622694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	11898.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	112.12	95.84	81.4	116.73	119.89	90.02	85.55	99.05	63.08
Merged-chrX-163958158-3	chrX	163957656	163958656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178794, intron 1 of 4)	C-rich|Low_complexity|Low_complexity	510.0	NM_009453	22184.0	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	146.45	192.61	126.72	171.38	206.66	147.9	153.15	223.29	81.81
Merged-chr5-74093004-3	chr5	74092510	74093510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_145133)	promoter-TSS (NR_145133)	-50.0	NR_015531	70036.0	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	61.21	43.31	61.05	61.4	54.11	53.85	53.87	34.93	30.6
Merged-chr6-86494023-3	chr6	86493515	86494515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5788.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	298.04	237.76	163.72	194.32	118.03	105.3	167.93	161.39	101.8
Merged-chr9-27030100-3	chr9	27029634	27030634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178027)	promoter-TSS (NM_178027)	-40.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	119.56	150.68	141.52	130.22	151.15	153.52	144.7	149.01	110.54
Merged-chr4-62329105-1	chr4	62328605	62329605	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 13 of 27)	intron (NM_001355385, intron 13 of 27)	31491.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	116.7	134.09	109.14	116.73	129.22	95.65	160.54	109.66	76.82
Merged-chr11-53795000-3	chr11	53794509	53795509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	24536.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	217.95	156.21	133.19	211.86	125.96	195.32	220.74	201.19	107.42
Merged-chr4-121009307-3	chr4	121008802	121009802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	7945.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	83.52	82.02	57.35	73.54	60.18	65.91	60.2	67.65	42.47
Merged-chr4-12461380-1	chr4	12460880	12461880	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-289365.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	10.87	21.66	24.05	29.69	41.99	40.19	38.02	24.76	16.24
Merged-chr19-5931758-3	chr19	5931254	5932254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6938.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	209.94	131.78	106.37	151.81	71.84	75.56	120.41	118.5	63.7
Merged-chr2-14192257-3	chr2	14191763	14192763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081310, exon 2 of 4)	exon (NM_001081310, exon 2 of 4)	17739.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	49.77	63.13	13.87	40.48	42.92	32.15	25.35	23.43	12.49
Merged-chr11-75644941-3	chr11	75644450	75645450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008916, intron 7 of 11)	MIRb|SINE|MIR	-6559.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	30.32	17.51	15.72	22.27	20.06	16.08	12.67	15.92	8.74
Merged-chr7-29231643-3	chr7	29231157	29232157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	865.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	86.95	70.04	115.62	74.22	58.78	73.14	164.76	131.77	68.7
Merged-chr9-59539794-5	chr9	59539282	59540282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010421, exon 1 of 14)	exon (NM_010421, exon 1 of 14)	242.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	415.31	406.41	262.69	432.49	405.4	310.26	373.89	405.47	214.21
Merged-chr11-6695441-3	chr11	6694955	6695955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	24582.0	NR_046025	626419.0	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	3.43	3.23	3.7	5.4	5.13	4.02	5.28	1.77	2.5
Merged-chr16-13903685-1	chr16	13903185	13904185	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053181)	promoter-TSS (NM_053181)	524.0	NM_001289562	93734.0	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	101.83	99.53	115.62	60.05	81.17	124.59	114.07	106.56	68.07
Merged-chr8-23208435-3	chr8	23207930	23208930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018743)	promoter-TSS (NM_018743)	23.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	69.79	45.62	64.75	78.27	49.92	83.59	71.82	38.91	47.46
Merged-chr13-5803037-3	chr13	5802529	5803529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55063.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	371.26	416.55	164.64	462.86	497.3	294.99	331.64	412.1	154.26
Merged-chr19-4283271-3	chr19	4282780	4283780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-143.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	39.47	26.73	35.15	35.09	14.46	33.76	34.85	17.24	25.61
Merged-chr8-83109966-3	chr8	83109474	83110474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55378.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	44.62	44.7	38.85	40.48	33.59	28.13	36.97	26.97	28.73
Merged-chr2-25461106-3	chr2	25460629	25461629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153557)	promoter-TSS (NM_153557)	-35.0	NM_153557	227622.0	Mm.261780	NM_153557	ENSMUSG00000047617	Paxx	D930050G13Rik	non-homologous end joining factor	protein-coding	65.79	53.91	46.25	65.45	56.91	61.09	72.88	71.19	45.59
Merged-chr1-138967616-3	chr1	138967111	138968111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181347)	promoter-TSS (NM_181347)	-110.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	64.64	76.49	43.47	51.28	49.45	45.82	77.1	77.82	56.83
Merged-chr18-50038540-3	chr18	50038039	50039039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	7555.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	41.19	45.16	28.67	31.71	20.06	51.44	12.67	14.15	7.49
Merged-chr11-107479441-3	chr11	107478943	107479943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-85.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	262.57	213.8	147.07	282.03	207.13	171.21	211.24	245.4	130.53
Merged-chr9-96393321-3	chr9	96392830	96393830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-28899.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	87.52	96.3	71.22	110.65	89.57	111.73	168.99	190.57	103.05
Merged-chr13-55022906-3	chr13	55022445	55023445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1560.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	160.18	177.4	129.49	137.64	118.03	162.37	179.55	255.13	104.92
Merged-chr14-62026762-3	chr14	62026267	62027267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	266212.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	44.62	59.44	32.37	60.05	57.38	68.32	47.53	52.62	35.6
Merged-chr7-128392090-2	chr7	128391594	128392594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26078.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	330.07	255.74	218.29	262.47	189.87	185.68	195.39	243.19	158.01
Merged-chr12-51348211-3	chr12	51347705	51348705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167963)	promoter-TSS (NM_001167963)	-25.0	NM_001167964	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	74.94	73.73	43.47	77.59	52.25	90.02	90.83	73.84	41.22
Merged-chr19-5491470-3	chr19	5490964	5491964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007687, intron 1 of 3)	intron (NM_007687, intron 1 of 3)	1009.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	190.49	163.12	167.42	143.04	128.76	169.6	126.74	131.32	146.14
Merged-chr4-9737845-3	chr4	9737347	9738347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32738.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	35.47	39.17	38.85	39.81	22.86	29.74	31.69	26.53	26.23
Merged-chr2-84650753-3	chr2	84650239	84651239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007615)	promoter-TSS (NM_007615)	1.0	NM_001085449	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	246.56	244.22	131.34	218.61	166.54	142.27	205.96	275.91	133.02
Merged-chr9-66360424-3	chr9	66359922	66360922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	9972.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	45.76	58.52	43.47	45.88	68.58	26.53	47.53	41.12	31.23
Merged-chr14-77537297-2	chr14	77536796	77537796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30428.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	6.29	9.68	7.4	11.47	4.67	9.65	4.22	2.65	11.24
Merged-chr11-29172846-3	chr11	29172344	29173344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-63.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	207.08	211.5	148.92	197.02	202.93	155.93	158.43	218.87	166.12
Merged-chr19-56774540-3	chr19	56773986	56774986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39197.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	166.47	163.58	110.99	233.45	166.54	179.24	164.76	182.62	104.92
Merged-chr10-44003866-3	chr10	44003379	44004379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172393, exon 1 of 20)	exon (NM_172393, exon 1 of 20)	967.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	223.1	275.55	174.82	187.57	212.73	135.04	241.87	205.61	156.76
Merged-chr6-131247428-3	chr6	131246937	131247937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170851)	promoter-TSS (NM_001170851)	-75.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	69.79	126.25	53.65	80.29	86.3	49.83	73.93	106.12	43.72
Merged-chr16-38396328-3	chr16	38395832	38396832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134102, exon 11 of 11)	3' UTR (NM_134102, exon 11 of 11)	34142.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	30.89	30.87	12.02	50.6	23.33	40.99	35.91	22.55	13.74
Merged-chr10-111004328-3	chr10	111003828	111004828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359624, intron 1 of 16)	MTE2a|LTR|ERVL-MaLR	5681.0	NM_001359622	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	24.03	13.36	18.5	20.24	10.26	6.43	14.79	22.11	8.12
Merged-chr7-24462432-3	chr7	24461946	24462946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-37.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	26.89	42.85	53.65	54.65	50.38	107.71	51.75	31.39	39.35
Merged-chr1-149841082-3	chr1	149840601	149841601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 16 of 17)	intron (NM_008869, intron 16 of 17)	81338.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	80.66	95.84	52.72	135.62	121.29	102.88	147.87	205.17	95.55
Merged-chr16-22121381-3	chr16	22120894	22121894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	L1MA5|LINE|L1	41905.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	78.37	45.62	35.15	71.52	54.58	45.82	94.0	91.53	43.72
Merged-chr14-70054352-3	chr14	70053858	70054858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-23087.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	36.04	21.2	19.42	49.25	22.86	23.31	52.81	42.89	33.1
Merged-chr17-44459201-3	chr17	44458705	44459705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270633.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	25.17	45.62	56.42	37.11	27.06	33.76	33.8	39.35	27.48
Merged-chr15-102331751-3	chr15	102331233	102332233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021713)	promoter-TSS (NM_021713)	24.0	NM_021713	60315.0	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	26.89	26.73	40.7	24.96	34.99	28.13	25.35	15.92	14.36
Merged-chr4-59000799-3	chr4	59000285	59001285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2408.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	3.43	4.15	1.85	2.7	3.27	4.82	4.22	3.1	6.25
Merged-chr11-70803893-3	chr11	70803395	70804395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	8666.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	205.37	212.42	105.44	212.54	144.15	141.47	157.37	256.9	118.04
Merged-chr15-100678740-3	chr15	100678250	100679250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	9170.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	157.31	116.12	99.89	126.85	81.17	136.64	85.55	147.68	96.18
Merged-chr9-108809464-3	chr9	108808975	108809975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030729, intron 1 of 12)	ERVB4_1C-LTR_Mm|LTR|ERVK	1095.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	33.18	51.61	49.02	49.25	26.12	57.87	45.42	41.56	48.09
Merged-chr1-192537375-3	chr1	192536891	192537891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	ORR1D2|LTR|ERVL-MaLR	233828.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	37.76	38.25	24.97	70.85	64.38	28.94	35.91	25.65	16.24
Merged-chr4-149504944-3	chr4	149504443	149505443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13298.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	28.03	20.27	14.8	32.39	23.79	31.35	35.91	28.3	32.48
Merged-chr14-48459091-3	chr14	48458583	48459583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	12731.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	123.56	145.61	128.57	108.63	104.96	113.33	119.35	130.44	110.54
Merged-chr19-44295964-3	chr19	44295456	44296456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	2280.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	25.17	18.89	3.7	14.84	10.26	19.29	27.46	17.24	7.49
Merged-chr10-118869282-5	chr10	118868781	118869781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-378.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	348.95	235.0	332.98	396.06	244.45	242.74	327.42	278.12	171.75
Merged-chr18-46576439-3	chr18	46575935	46576935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1902.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	65.79	79.72	57.35	68.82	64.38	73.95	54.92	67.65	55.58
Merged-chr4-12089365-3	chr4	12088843	12089843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356563)	promoter-TSS (NM_001356563)	-27.0	NM_001356563	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	50.91	29.03	25.9	68.15	47.12	22.51	48.58	36.7	23.73
Merged-chr14-103099723-3	chr14	103099212	103100212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347601)	promoter-TSS (NM_001347601)	-146.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	262.0	245.14	202.56	305.65	222.06	155.93	241.87	191.9	114.29
Merged-chr1-86526537-3	chr1	86526044	86527044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360831)	promoter-TSS (NM_001360831)	-13.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	250.56	193.53	152.62	214.56	175.87	155.13	194.34	179.52	142.39
Merged-chr3-123267355-3	chr3	123266822	123267822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027135)	promoter-TSS (NM_027135)	-174.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	287.74	262.19	222.91	309.7	243.98	176.03	237.64	231.25	122.41
Merged-chr9-70838682-3	chr9	70838174	70839174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	96134.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	233.4	139.16	113.77	180.82	104.96	137.45	202.79	187.04	93.05
Merged-chr14-104027266-3	chr14	104026792	104027792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045953)	promoter-TSS (NR_045953)	-150.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	6.86	5.07	1.85	31.71	12.6	13.66	10.56	5.31	5.0
Merged-chr5-125390123-3	chr5	125389644	125390644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	-127.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	438.19	443.27	223.84	406.85	395.13	229.88	416.14	467.81	152.38
Merged-chr18-82693020-3	chr18	82692530	82693530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177832)	promoter-TSS (NM_177832)	-296.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	127.57	117.5	148.92	109.98	101.7	105.3	137.3	119.83	89.93
Merged-chr11-116853294-3	chr11	116852777	116853777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011358)	promoter-TSS (NM_011358)	-183.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	493.68	337.75	266.39	572.16	367.61	383.41	304.18	344.01	203.6
Merged-chr17-46890587-3	chr17	46890086	46891086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-35.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	102.97	90.77	80.47	89.74	96.1	91.63	80.27	76.49	56.83
Merged-chr17-34632504-3	chr17	34632014	34633014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030890)	TTS (NM_030890)	2828.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	69.79	52.99	71.22	76.92	50.85	109.32	90.83	58.81	58.08
Merged-chr10-59222711-3	chr10	59222187	59223187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024911)	promoter-TSS (NM_001024911)	765.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	128.14	147.91	149.84	201.74	163.28	193.71	228.14	224.18	161.75
Merged-chr6-136654639-3	chr6	136654159	136655159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	7234.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	58.92	65.89	88.8	53.98	41.05	49.83	107.73	76.49	56.21
Merged-chr10-75860032-5	chr10	75859467	75860467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010798, intron 1 of 2)	CpG-1170	283.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	249.42	152.06	135.04	242.22	183.8	108.51	157.37	172.0	80.56
Merged-chr4-118428076-3	chr4	118427591	118428591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019422)	promoter-TSS (NM_019422)	-2.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	110.41	153.44	171.12	134.94	136.22	198.54	211.24	169.79	145.51
Merged-chr4-136144834-3	chr4	136144351	136145351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008321, intron 2 of 2)	CpG-10505	1029.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	354.1	242.37	206.26	336.68	284.1	248.37	303.13	347.54	166.75
Merged-chr9-57076191-3	chr9	57075653	57076653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011378)	promoter-TSS (NM_011378)	-104.0	NR_152107	72588.0	Mm.70350	NR_152107		2700012I20Rik	-	RIKEN cDNA 2700012I20 gene	ncRNA	171.62	155.28	159.09	159.23	120.83	160.76	172.16	161.39	125.53
Merged-chr9-108201323-3	chr9	108200816	108201816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10933.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	10.3	12.9	12.95	6.07	7.0	4.02	12.67	5.75	3.12
Merged-chr16-97536000-3	chr16	97535521	97536521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003508)	promoter-TSS (NR_003508)	-60.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	192.78	193.99	158.17	166.66	150.68	145.49	161.6	166.25	103.05
Merged-chr11-71019460-3	chr11	71018944	71019944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291147)	promoter-TSS (NM_001291147)	-141.0	NM_033562	116891.0	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	72.08	76.03	61.05	51.95	47.58	59.48	82.38	62.79	43.09
Merged-chr1-58722568-3	chr1	58721959	58722959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-8093.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	300.9	314.72	197.02	375.82	307.43	173.62	326.36	371.42	151.14
Merged-chr7-98178246-3	chr7	98177736	98178736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	38.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	74.37	75.57	70.3	62.75	61.11	45.82	107.73	80.47	59.33
Merged-chr17-88551188-3	chr17	88550689	88551689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21065.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	166.47	177.4	136.89	169.35	122.69	156.74	153.15	194.55	114.29
Merged-chr1-179668179-3	chr1	179667677	179668677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178653)	promoter-TSS (NM_178653)	-54.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	6.86	3.69	11.1	16.19	6.06	13.66	7.39	6.63	5.0
Merged-chr16-20097520-3	chr16	20097020	20098020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029436)	promoter-TSS (NM_029436)	-34.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	275.73	362.64	282.11	315.09	377.87	264.45	286.23	317.48	162.38
Merged-chr1-123934135-3	chr1	123933636	123934636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	111423.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	82.38	86.17	50.87	97.16	70.44	97.26	90.83	110.98	74.32
Merged-chr11-3427844-3	chr11	3427360	3428360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290473, intron 2 of 5)	intron (NM_001290473, intron 2 of 5)	-18622.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	11.44	5.99	11.1	15.52	5.13	12.06	12.67	5.75	15.61
Merged-chr4-107367942-4	chr4	107367429	107368429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028355, exon 1 of 18)	5' UTR (NM_028355, exon 1 of 18)	145.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	43.48	39.17	42.55	39.13	40.59	49.03	51.75	35.82	33.1
Merged-chr11-106216434-3	chr11	106215933	106216933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026009)	promoter-TSS (NM_026009)	-66.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	217.95	188.0	158.17	178.8	156.75	164.78	200.68	237.0	121.16
Merged-chr16-55757327-3	chr16	55756832	55757832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64806.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	187.06	205.05	128.57	170.03	171.68	110.92	154.2	179.08	99.3
Merged-chr1-152025429-3	chr1	152024915	152025915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	MTD|LTR|ERVL-MaLR	64905.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	22.31	17.05	6.47	18.89	13.53	8.04	31.69	16.8	9.37
Merged-chr2-25549634-3	chr2	25549142	25550142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2702.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	22.88	18.89	24.05	10.12	5.6	3.22	26.4	27.41	14.36
Merged-chr11-100472796-3	chr11	100472295	100473295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172565)	promoter-TSS (NM_172565)	-13.0	NM_172565	217194.0	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	97.25	104.6	62.9	74.22	97.97	59.48	89.78	60.58	72.45
Merged-chr7-102249573-3	chr7	102249101	102250101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	517.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	225.96	242.83	284.89	176.1	142.75	245.16	210.18	210.47	197.98
Merged-chr2-167101889-3	chr2	167101404	167102404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008420, exon 2 of 2)	3' UTR (NM_008420, exon 2 of 2)	36611.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	48.05	53.45	36.07	47.23	78.37	34.56	63.37	69.86	47.46
Merged-chr6-48601993-3	chr6	48601510	48602510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8127.0	NM_001079904	58887.0	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	13.73	6.91	20.35	11.47	4.67	9.65	10.56	7.96	9.37
Merged-chr5-65107465-3	chr5	65106998	65107998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347355)	promoter-TSS (NM_001347355)	-70.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	316.35	203.67	186.84	262.47	146.95	152.72	260.88	182.62	162.38
Merged-chr6-31216728-3	chr6	31216252	31217252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	CpG	1722.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	574.91	333.61	251.59	516.16	311.63	244.35	341.15	294.04	179.86
Merged-chr12-79630396-3	chr12	79629904	79630904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	294329.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	163.04	207.81	123.94	158.56	127.36	118.96	132.02	171.56	98.05
Merged-chr10-117836546-3	chr10	117836049	117837049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	9425.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	64.64	39.17	46.25	45.88	36.85	49.83	47.53	54.39	39.97
Merged-chr5-123376824-3	chr5	123376343	123377343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17955.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	209.37	229.47	138.74	176.78	153.01	127.8	239.75	315.71	155.51
Merged-chr7-16018459-6	chr7	16017951	16018951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-18956.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	93.82	106.9	97.12	103.23	66.71	98.06	74.99	76.05	45.59
Merged-chr2-102739030-3	chr2	102738526	102739526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 3 of 10)	intron (NM_001077514, intron 3 of 10)	7734.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	30.32	8.75	9.25	22.94	6.06	10.45	12.67	11.5	11.87
Merged-chr10-88417840-3	chr10	88417312	88418312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 5 of 20)	intron (NM_001004164, intron 5 of 20)	38400.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	25.74	14.28	16.65	29.01	11.66	20.9	26.4	21.22	6.25
Merged-chr14-66219026-3	chr14	66218542	66219542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-5218.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	86.95	82.02	64.75	80.29	56.45	58.68	48.58	49.08	52.46
Merged-chr1-34028945-3	chr1	34028441	34029441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134448, intron 1 of 97)	L1MEc|LINE|L1	17116.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	101.25	95.84	61.05	93.11	66.71	54.66	115.12	69.86	51.21
Merged-chr15-25413623-3	chr15	25413132	25414132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027376)	promoter-TSS (NR_027376)	132.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	102.97	53.45	82.32	130.22	106.83	88.42	137.3	76.05	59.95
Merged-chr17-35777198-3	chr17	35776671	35777671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4721.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	41.19	25.34	26.82	33.74	40.59	39.39	50.7	52.18	33.72
Merged-chr2-94158140-3	chr2	94157627	94158627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019657)	promoter-TSS (NM_019657)	-218.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	189.35	260.34	176.67	175.43	232.79	143.88	196.45	230.81	139.89
Merged-chr11-114725193-3	chr11	114724682	114725682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2230.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	24.6	8.29	3.7	15.52	5.13	8.84	10.56	6.19	3.75
Merged-chr15-51865538-3	chr15	51865035	51866035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080635)	promoter-TSS (NM_080635)	-74.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	151.02	117.96	106.37	98.51	102.63	77.16	115.12	103.91	62.45
Merged-chrX-155215562-2	chrX	155215047	155216047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291865, intron 3 of 6)	intron (NM_001291865, intron 3 of 6)	902.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	147.59	173.25	95.27	184.2	125.02	127.0	200.68	214.45	92.43
Merged-chr10-118096330-3	chr10	118095826	118096826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45461.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	159.6	200.44	156.32	232.1	203.4	197.73	254.54	243.63	129.28
Merged-chr4-119541949-3	chr4	119541436	119542436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357177)	promoter-TSS (NM_001357177)	-400.0	NM_001357177	230700.0	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	44.62	59.44	39.77	35.09	44.32	42.6	30.63	35.37	36.22
Merged-chr11-50224615-3	chr11	50224100	50225100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-735.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	231.11	175.1	130.42	209.84	162.81	163.97	149.98	182.62	88.06
Merged-chr7-97136624-3	chr7	97136136	97137136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	54885.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	108.12	123.03	59.2	103.23	97.5	93.24	108.79	122.04	87.43
Merged-chr10-80115620-3	chr10	80115095	80116095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011492)	promoter-TSS (NM_011492)	-208.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	287.17	245.6	242.34	226.03	157.21	172.01	234.47	201.19	146.14
Merged-chr13-56352649-3	chr13	56352204	56353204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10196.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	102.4	92.16	76.77	110.65	80.71	115.75	115.12	91.09	35.6
Merged-chr10-52417460-3	chr10	52416961	52417961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030250)	promoter-TSS (NM_030250)	-86.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	233.97	192.61	146.14	241.55	207.13	187.28	208.07	159.62	134.27
Merged-chr6-140766541-3	chr6	140766029	140767029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139644.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	62.35	105.98	29.6	82.99	83.04	64.3	106.67	166.25	66.2
Merged-chr5-92499675-3	chr5	92499164	92500164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	5993.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	86.38	70.5	64.75	88.39	64.84	73.14	72.88	72.07	57.46
Merged-chr12-99562503-3	chr12	99562001	99563001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1340.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	168.76	261.73	102.67	147.76	216.93	102.88	162.65	244.96	126.15
Merged-chr13-107101165-3	chr13	107100665	107101665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78595.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	20.02	29.95	29.6	12.82	15.39	25.72	29.57	15.92	26.23
Merged-chr16-21246069-3	chr16	21245562	21246562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10004.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	13.73	16.13	13.87	10.8	12.13	10.45	20.07	8.84	5.0
Merged-chr8-79058695-3	chr8	79058211	79059211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	30274.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	16.59	8.29	35.15	40.48	48.52	45.82	9.51	8.4	13.74
Merged-chr17-87975578-2	chr17	87975090	87976090	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010830, intron 1 of 9)	CpG	540.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	38.9	45.16	51.8	38.46	32.19	43.4	63.37	59.25	34.97
Merged-chr12-98259453-3	chr12	98258958	98259958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	1.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	343.8	327.16	183.14	304.3	302.76	282.13	282.0	276.8	189.86
Merged-chr2-166805494-3	chr2	166804996	166805996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085495)	promoter-TSS (NM_001085495)	-85.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	273.44	197.22	142.44	246.27	224.86	174.42	205.96	181.29	97.43
Merged-chr9-121857754-3	chr9	121857269	121858269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357839)	promoter-TSS (NM_001357839)	27.0	NM_001357841	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	446.77	404.57	361.66	447.34	373.21	284.54	440.43	378.5	229.83
Merged-chr4-24585060-3	chr4	24584559	24585559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 17 of 24)	intron (NR_149739, intron 17 of 24)	88608.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	34.9	40.09	14.8	24.96	31.72	23.31	19.01	19.01	7.49
Merged-chr1-46832158-3	chr1	46831664	46832664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356416, intron 4 of 10)	intron (NM_001356416, intron 4 of 10)	21454.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	19.45	18.43	11.1	15.52	15.86	8.04	11.62	10.61	9.99
Merged-chr16-57181350-3	chr16	57180801	57181801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 14 of 17)	intron (NM_026254, intron 14 of 17)	-13969.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	65.79	66.35	48.1	72.87	67.18	61.09	63.37	74.73	47.46
Merged-chr11-5762318-3	chr11	5761829	5762829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361588)	promoter-TSS (NM_001361588)	47.0	NM_001361588	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	208.8	272.78	207.19	246.27	264.51	203.36	265.1	259.11	139.89
Merged-chr10-100015751-3	chr10	100015262	100016262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013598)	promoter-TSS (NM_013598)	-59.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	18.31	17.51	21.27	35.09	27.52	21.7	19.01	14.59	13.12
Merged-chr1-36508414-3	chr1	36507923	36508923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033570, exon 7 of 7)	3' UTR (NM_033570, exon 7 of 7)	-3444.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	9.15	6.45	12.95	8.1	9.33	3.22	5.28	3.98	5.62
Merged-chr3-94482984-3	chr3	94482482	94483482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110353, intron 1 of 11)	intron (NR_110353, intron 1 of 11)	260.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	5.72	3.23	0.0	9.45	1.87	12.86	2.11	6.63	5.62
Merged-chr2-38287291-3	chr2	38286791	38287791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146122)	promoter-TSS (NM_146122)	93.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	137.29	113.81	141.52	222.66	216.46	200.14	173.21	153.43	98.05
Merged-chr18-34506885-3	chr18	34506387	34507387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-64.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	422.18	423.46	362.58	404.83	370.87	368.94	329.53	355.5	201.72
Merged-chr17-24037457-3	chr17	24036956	24037956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175440)	promoter-TSS (NM_175440)	-787.0	NM_175440	213171.0	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	14.87	8.75	5.55	23.62	10.26	14.47	6.34	3.98	5.62
Merged-chr2-156992137-3	chr2	156991632	156992632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013865)	promoter-TSS (NM_013865)	-21.0	NM_180956	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	23.45	19.35	18.5	31.04	20.99	16.08	28.52	14.15	8.12
Merged-chr13-45006050-3	chr13	45005530	45006530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3934.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	105.83	66.81	37.92	102.56	96.1	70.73	40.14	44.22	26.85
Merged-chr5-117872738-3	chr5	117872217	117873217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	5878.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	94.39	82.48	98.05	118.08	84.44	108.51	86.61	64.11	78.07
Merged-chr8-120538857-3	chr8	120538343	120539343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106159)	TTS (NR_106159)	147.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	184.2	183.39	197.02	172.73	193.13	229.08	248.2	267.95	146.14
Merged-chr2-156312581-3	chr2	156312088	156313088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001316755, exon 1 of 10)	exon (NM_001316755, exon 1 of 10)	115.0	NM_001316755	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	536.59	402.73	394.96	373.79	319.56	271.68	403.46	405.47	272.29
Merged-chr8-71668292-3	chr8	71667783	71668783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	3474.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	28.6	5.53	20.35	42.51	18.19	22.51	87.66	60.13	36.22
Merged-chr17-31564835-2	chr17	31564356	31565356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	83.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	135.58	79.72	73.07	135.62	48.52	77.97	120.41	43.77	63.08
Merged-chr2-19300481-3	chr2	19299977	19300977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271564, exon 17 of 19)	exon (NM_001271564, exon 17 of 19)	-43840.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	32.61	36.4	10.17	21.59	19.59	15.27	24.29	26.09	9.37
Merged-chr4-47474490-4	chr4	47473954	47474954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019998)	promoter-TSS (NM_019998)	-87.0	NM_019998	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	59.49	58.06	61.05	81.64	47.58	88.42	113.01	76.94	62.45
Merged-chr16-97922555-3	chr16	97922056	97923056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174847)	promoter-TSS (NM_174847)	77.0	NM_174847	207781.0	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	162.46	112.43	115.62	156.53	117.56	134.23	126.74	85.78	79.32
Merged-chr3-8981864-3	chr3	8981368	8982368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-17722.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	201.93	213.8	131.34	206.46	169.81	159.15	215.46	272.37	112.42
Merged-chr10-127041987-3	chr10	127041490	127042490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	58.0	NM_010792	17299.0	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	46.91	44.24	25.9	75.57	54.58	54.66	59.15	57.92	38.1
Merged-chr13-97190579-3	chr13	97190093	97191093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010422, intron 3 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	7764.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	8.58	5.99	3.7	14.17	6.53	16.08	9.51	8.4	10.62
Merged-chr12-85701023-3	chr12	85700501	85701501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	14281.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	65.21	57.6	34.22	79.62	70.44	57.87	79.21	76.49	50.59
Merged-chr10-59951961-3	chr10	59951493	59952493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-223.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	62.93	59.44	64.75	62.07	54.58	65.91	80.27	57.92	37.47
Merged-chrUn_JH584304-48567-1	chrUn_JH584304	48067	49067	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11122.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	42.25	18.13	0.0
Merged-chr11-100571259-3	chr11	100570749	100571749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-3690.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	73.79	83.4	115.62	88.39	81.17	73.14	94.0	113.19	72.45
Merged-chr6-122570985-3	chr6	122570512	122571512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17203.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	248.27	222.1	123.02	249.65	153.48	165.58	194.34	256.9	132.4
Merged-chr14-76179580-3	chr14	76179101	76180101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68710.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	107.55	70.5	50.87	64.77	28.46	56.27	61.26	42.45	41.84
Merged-chr4-136123583-3	chr4	136123084	136124084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20238.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	212.23	134.09	105.44	188.92	100.77	142.27	205.96	178.64	105.55
Merged-chr15-95900056-3	chr15	95899552	95900552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-69980.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	14.87	16.59	6.47	14.84	16.79	14.47	28.52	24.32	12.49
Merged-chr7-104369936-3	chr7	104369438	104370438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11292.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	108.69	119.34	90.65	96.48	87.24	90.02	116.18	147.24	94.93
Merged-chr7-128461352-2	chr7	128460845	128461845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009383, exon 1 of 12)	5' UTR (NM_009383, exon 1 of 12)	168.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	251.13	225.78	171.12	203.76	205.26	148.7	256.65	182.17	145.51
Merged-chr1-182282746-3	chr1	182282232	182283232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	69.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	226.53	196.75	155.39	270.56	193.13	208.98	215.46	178.19	108.04
Merged-chr3-87561743-3	chr3	87561250	87562250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36172.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	33.18	20.27	14.8	43.18	30.79	35.37	20.07	19.46	6.25
Merged-chr10-60744732-1	chr10	60744232	60745232	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	8050.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	39.47	31.79	31.45	49.93	31.72	40.19	33.8	42.01	26.23
Merged-chr6-131388481-3	chr6	131388039	131389039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139117)	promoter-TSS (NM_139117)	-89.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	31.46	17.05	12.95	44.53	20.99	29.74	26.4	5.75	5.62
Merged-chr2-144245704-3	chr2	144245227	144246227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20475.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	47.48	44.7	40.7	52.63	48.98	43.4	49.64	36.7	39.35
Merged-chr6-97456431-3	chr6	97455927	97456927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2859.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	268.87	318.86	171.12	282.71	263.11	183.26	258.77	254.69	128.03
Merged-chr13-113869426-3	chr13	113868922	113869922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	74914.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	18.88	15.21	19.42	24.29	15.86	21.7	21.12	17.69	18.11
Merged-chr4-87943172-3	chr4	87942681	87943681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	90226.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.0	1.38	0.0	6.75	1.4	4.02	3.17	4.42	0.0
Merged-chr4-134653054-3	chr4	134652554	134653554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	L2b|LINE|L2	51236.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	18.88	20.74	10.17	39.13	22.86	16.88	16.9	9.73	8.74
Merged-chr7-97906107-1	chr7	97905607	97906607	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357362, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-13851.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	1.14	2.76	12.95	6.07	3.27	4.82	13.73	12.82	12.49
Merged-chr16-75909286-3	chr16	75908743	75909743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023380)	promoter-TSS (NM_023380)	23.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	57.21	46.54	29.6	57.35	33.12	33.76	69.71	44.66	37.47
Merged-chr3-106721715-3	chr3	106721216	106722216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039488)	promoter-TSS (NM_001039488)	34.0	NM_001286685	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	343.23	390.74	184.99	339.38	371.81	257.21	264.05	379.82	121.16
Merged-chr14-60636331-3	chr14	60635837	60636837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 1 of 12)	intron (NM_001033272, intron 1 of 12)	1632.0	NM_001033272	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	18.31	17.05	8.32	14.84	12.13	11.25	29.57	24.76	17.49
Merged-chr13-99287393-3	chr13	99286881	99287881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	66.36	77.87	61.97	66.8	55.51	67.52	113.01	120.71	56.21
Merged-chr7-6174636-3	chr7	6174135	6175135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146024, intron 2 of 4)	B2_Mm2|SINE|B2	2122.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	10.3	13.82	8.32	12.14	6.06	16.88	8.45	8.4	9.37
Merged-chr18-20784881-3	chr18	20784391	20785391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38487.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	25.74	24.42	7.4	36.43	22.86	19.29	21.12	22.99	8.74
Merged-chr10-51459780-3	chr10	51459248	51460248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20864.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	13.73	11.06	12.95	26.99	22.39	19.29	13.73	16.36	3.75
Merged-chr19-53141441-3	chr19	53140941	53141941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164101, intron 1 of 13)	intron (NM_001164101, intron 1 of 13)	998.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	22.88	19.35	9.25	21.59	25.66	44.21	20.07	21.22	38.1
Merged-chr17-35870397-3	chr17	35869873	35870873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3758.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	144.16	117.96	103.59	84.34	70.91	147.09	109.84	112.75	123.66
Merged-chr10-127604736-3	chr10	127604246	127605246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	16402.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	270.01	187.54	144.29	247.62	146.02	112.53	253.48	278.12	123.03
Merged-chr17-21962685-3	chr17	21962190	21963190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199048)	promoter-TSS (NM_001199048)	131.0	NM_001025373	74670.0	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	104.69	143.76	61.97	90.41	108.7	90.83	163.71	145.03	93.05
Merged-chr12-32774898-3	chr12	32774397	32775397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-45438.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	43.48	45.62	20.35	62.75	34.52	17.68	57.03	57.48	27.48
Merged-chr1-135146769-3	chr1	135146331	135147331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026823)	promoter-TSS (NM_026823)	-3.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	244.27	208.74	305.23	305.65	288.3	255.6	251.37	218.87	156.76
Merged-chr1-135282730-3	chr1	135282225	135283225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	intron (NM_001159624, intron 1 of 9)	1359.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	158.46	146.53	97.12	155.86	125.49	107.71	160.54	175.1	109.29
Merged-chr16-97997192-3	chr16	97996683	97997683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130962)	promoter-TSS (NR_130962)	-132.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	270.58	286.61	214.59	203.76	217.86	156.74	320.02	313.94	161.13
Merged-chrX-105070175-3	chrX	105069670	105070670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015467)	promoter-TSS (NR_015467)	-46.0	NR_015467	71445.0	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	12.01	12.44	9.25	12.82	16.33	24.92	16.9	11.94	8.74
Merged-chr12-32693975-1	chr12	32693475	32694475	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-126360.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	16.59	6.45	14.8	15.52	6.53	8.04	4.22	3.54	8.12
Merged-chr11-101687935-3	chr11	101687430	101688430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22389.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	19.45	6.45	22.2	31.04	7.93	4.82	22.18	15.03	2.5
Merged-chr4-72379162-3	chr4	72378650	72379650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177906.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	189.35	177.4	115.62	192.29	151.62	163.17	139.42	190.13	89.31
Merged-chr2-166140599-1	chr2	166140099	166141099	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028072, intron 1 of 20)	intron (NM_028072, intron 1 of 20)	14686.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	9.15	7.37	5.55	10.8	4.67	4.82	1.06	1.77	0.0
Merged-chr19-47919831-1	chr19	47919331	47920331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001001738)	promoter-TSS (NM_001001738)	-532.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	137.29	153.9	98.97	143.71	103.1	172.01	132.02	97.72	103.67
Merged-chr5-9161711-3	chr5	9161229	9162229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	47.0	NR_152860	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	187.63	156.67	198.87	190.95	115.69	164.78	204.9	130.88	146.14
Merged-chr8-106339034-3	chr8	106338530	106339530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1042.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	44.62	61.75	37.92	32.39	42.45	44.21	42.25	61.02	63.08
Merged-chr5-9107474-3	chr5	9106970	9107970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	6733.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	14.87	8.75	9.25	12.82	6.53	12.86	24.29	11.05	21.86
Merged-chr10-44658443-3	chr10	44657954	44658954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-199706.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	139.01	150.22	75.85	197.69	167.01	158.35	160.54	172.0	111.79
Merged-chr13-55362775-3	chr13	55362286	55363286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025828)	promoter-TSS (NM_025828)	-3.0	NM_025828	66890.0	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	237.97	270.02	215.51	217.26	246.32	203.36	197.51	210.91	141.77
Merged-chr2-130488781-3	chr2	130488275	130489275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	38497.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	81.23	106.44	61.05	158.56	96.1	112.53	91.89	122.48	74.94
Merged-chr9-116174829-1	chr9	116174329	116175329	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	CpG	534.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	526.29	555.24	429.18	474.33	582.67	414.75	379.17	438.19	312.89
Merged-chr15-102247151-3	chr15	102246640	102247640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042727)	promoter-TSS (NM_001042727)	-640.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	133.29	115.2	151.69	97.83	59.25	98.06	156.32	141.94	97.43
Merged-chr11-79871330-3	chr11	79870842	79871842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91045.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	291.75	272.32	143.37	460.83	450.18	307.85	376.0	534.58	181.74
Merged-chr15-79932748-3	chr15	79932262	79933262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144811)	promoter-TSS (NM_144811)	-116.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	42.33	37.78	33.3	46.56	42.45	46.62	47.53	33.6	24.98
Merged-chr3-104442180-3	chr3	104441705	104442705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69713.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	34.32	8.75	12.95	17.54	13.06	20.9	13.73	11.5	9.99
Merged-chr9-48495333-3	chr9	48494835	48495835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326356)	promoter-TSS (NM_001326356)	-5.0	NR_136937	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	639.56	805.91	548.5	616.69	846.71	557.83	553.44	652.64	342.87
Merged-chr1-171150583-3	chr1	171150123	171151123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	-20.0	NM_025321	66052.0	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	233.4	277.39	176.67	239.52	229.06	210.59	221.8	280.78	132.4
Merged-chr5-44212059-3	chr5	44211581	44212581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173764, intron 2 of 13)	ORR1D1|LTR|ERVL-MaLR	14525.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	42.33	35.02	22.2	30.36	23.33	20.09	66.54	47.75	19.36
Merged-chr5-92504435-3	chr5	92503965	92504965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	1192.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	314.63	282.92	166.49	264.49	235.12	221.04	228.14	232.58	167.37
Merged-chr6-118562332-3	chr6	118561835	118562835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081112)	promoter-TSS (NM_001081112)	-79.0	NM_001081112	232339.0	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	22.31	20.74	17.57	24.96	37.79	35.37	31.69	33.16	18.74
Merged-chr13-55571150-3	chr13	55570650	55571650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145382)	promoter-TSS (NM_145382)	-30.0	NM_145382	212483.0	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	28.03	28.57	21.27	40.48	33.59	22.51	50.7	15.92	14.99
Merged-chr9-21287940-4	chr9	21287382	21288382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145416)	promoter-TSS (NM_145416)	87.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	223.67	147.91	130.42	192.97	132.49	164.78	140.47	161.39	108.67
Merged-chr4-10983840-3	chr4	10983354	10984354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23765.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	13.73	15.67	14.8	2.7	7.0	4.82	16.9	13.71	18.11
Merged-chr16-92874232-3	chr16	92873719	92874719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48145.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	28.6	19.81	16.65	36.43	25.19	32.15	26.4	25.65	10.62
Merged-chr6-124901240-3	chr6	124900748	124901748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	10457.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	85.24	52.07	46.25	79.62	42.45	48.23	60.2	58.37	23.73
Merged-chr10-62980252-3	chr10	62979769	62980769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027425)	promoter-TSS (NM_027425)	46.0	NM_027425	70432.0	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	53.2	29.95	22.2	63.42	47.58	52.25	35.91	23.88	27.48
Merged-chr10-30770726-3	chr10	30770226	30771226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32600.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	25.74	39.63	26.82	39.81	43.39	44.21	46.47	28.74	16.24
Merged-chr5-114697106-2	chr5	114696598	114697598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6163.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	64.64	55.29	39.77	75.57	53.65	79.58	6.34	5.31	8.12
Merged-chr3-138531741-3	chr3	138531252	138532252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	4484.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	49.2	48.84	44.4	37.78	31.72	13.66	46.47	36.7	26.85
Merged-chr9-22117179-3	chr9	22116681	22117681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	14.0	NM_001357311	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	97.25	100.45	80.47	89.74	93.77	81.99	102.45	108.33	51.84
Merged-chr3-121841678-3	chr3	121841189	121842189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26387.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	70.36	39.17	37.92	68.82	24.26	40.99	111.96	65.44	43.72
Merged-chr14-74841905-3	chr14	74841393	74842393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	RLTR11A2|LTR|ERVK	105984.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	17.73	30.41	16.65	16.19	15.39	18.49	26.4	14.59	7.49
Merged-chr11-115814876-3	chr11	115814365	115815365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029557, intron 1 of 10)	CpG	126.0	NM_029557	76265.0	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	38.33	28.11	16.65	44.53	34.52	41.8	26.4	22.55	36.85
Merged-chr13-103774303-5	chr13	103773804	103774804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361085, exon 1 of 12)	exon (NM_001361085, exon 1 of 12)	304.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	255.71	233.16	178.52	265.84	226.26	213.81	285.17	282.99	162.38
Merged-chr6-120155642-3	chr6	120155157	120156157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-38166.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	183.06	164.96	86.02	227.38	151.62	154.33	160.54	181.73	126.78
Merged-chr6-6955942-3	chr6	6955437	6956437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077713)	promoter-TSS (NM_001077713)	-81.0	NM_001077713	71238.0	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	30.32	35.94	24.97	35.09	35.45	40.19	34.85	36.26	20.61
Merged-chr12-85305677-3	chr12	85305179	85306179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145138, intron 19 of 21)	intron (NM_145138, intron 19 of 21)	17088.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	110.98	97.23	108.22	81.64	99.83	87.61	122.52	145.92	71.2
Merged-chr8-39005854-3	chr8	39005339	39006339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030254)	promoter-TSS (NM_030254)	-6.0	NM_030254	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	33.75	24.42	33.3	41.16	40.12	45.82	31.69	26.97	19.98
Merged-chr12-84970913-3	chr12	84970390	84971390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178065)	promoter-TSS (NM_178065)	-4.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	88.1	94.0	97.12	95.81	81.64	104.49	110.9	137.96	55.58
Merged-chr3-127894149-3	chr3	127893656	127894656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	2167.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	34.32	36.86	35.15	26.99	23.79	41.8	41.19	42.01	25.61
Merged-chr14-54733731-3	chr14	54733215	54734215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 6 of 10)	intron (NM_016972, intron 6 of 10)	-21541.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	51.48	47.46	33.3	45.21	28.92	49.03	63.37	71.19	38.72
Merged-chr4-81743965-3	chr4	81743474	81744474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256961.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	29.75	31.33	23.12	14.84	19.59	24.92	25.35	14.15	34.35
Merged-chr7-45459415-4	chr7	45458890	45459890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010240, intron 1 of 3)	intron (NM_010240, intron 1 of 3)	496.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	124.71	102.75	98.05	129.55	80.71	130.21	139.42	127.34	105.55
Merged-chr15-97767927-3	chr15	97767432	97768432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144850)	promoter-TSS (NM_144850)	-266.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	28.6	12.44	9.25	41.83	19.59	36.97	7.39	4.86	2.5
Merged-chr11-75460595-3	chr11	75460071	75461071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030711)	promoter-TSS (NR_030711)	-968.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	537.73	585.2	301.53	547.2	470.71	356.08	406.63	584.1	259.8
Merged-chr16-23557442-3	chr16	23556960	23557960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36645.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	33.18	21.2	35.15	25.64	14.46	33.76	17.96	12.38	19.36
Merged-chr11-117946776-3	chr11	117946269	117947269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22597.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	132.14	98.61	74.92	112.0	68.58	81.99	104.56	95.95	82.44
Merged-chr9-109832793-4	chr9	109832275	109833275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018757)	promoter-TSS (NM_018757)	-19.0	NM_018757	54369.0	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	26.89	33.64	35.15	43.86	45.72	53.05	58.09	48.2	21.23
Merged-chr17-73067604-3	chr17	73067085	73068085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40400.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	111.55	90.77	46.25	102.56	73.71	77.16	111.96	112.31	50.59
Merged-chr9-109059704-3	chr9	109059193	109060193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011637)	promoter-TSS (NM_011637)	30.0	NM_011637	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	215.09	141.0	134.12	194.99	115.23	122.98	177.44	179.52	106.17
Merged-chr19-5849330-3	chr19	5848849	5849849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3869.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	356.96	302.27	186.84	290.8	245.38	213.81	267.21	307.31	128.65
Merged-chr11-32580676-3	chr11	32580174	32581174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	47408.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	18.88	12.9	24.05	18.89	9.8	16.08	16.9	11.5	13.74
Merged-chr9-108808362-3	chr9	108807862	108808862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	-18.0	NM_030729	80987.0	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	59.49	64.97	43.47	58.7	48.52	50.64	44.36	36.26	43.72
Merged-chr4-32575391-3	chr4	32574910	32575910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001109661, exon 4 of 5)	exon (NM_001109661, exon 4 of 5)	-3748.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	30.89	25.34	17.57	28.34	19.59	45.82	17.96	22.99	16.24
Merged-chrM-4676-2	chrM	4176	5176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											259.14	196.29	27.75	151.81	45.25	28.13	138.36	42.45	26.23
Merged-chrX-109196681-3	chrX	109196188	109197188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037917)	promoter-TSS (NM_001037917)	-68.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	78.94	87.55	30.52	103.23	108.7	63.5	71.82	109.22	30.6
Merged-chr1-64222717-3	chr1	64222257	64223257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101368.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	22.88	41.93	38.85	33.06	19.59	39.39	24.29	24.32	27.48
Merged-chr2-166293160-3	chr2	166292669	166293669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	19261.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	43.48	37.78	20.35	56.68	38.25	55.46	30.63	50.85	24.98
Merged-chr2-154285529-2	chr2	154285014	154286014	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21730.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	4.58	15.67	7.4	64.1	75.57	63.5	55.98	64.11	37.47
Merged-chr16-76110545-3	chr16	76110002	76111002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12111.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	46.34	32.72	11.1	56.68	34.99	11.25	43.3	25.65	11.87
Merged-chr14-10139494-3	chr14	10138995	10139995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	255400.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	41.76	34.1	41.62	33.06	30.32	36.17	23.24	29.63	49.34
Merged-chr2-164492966-3	chr2	164492471	164493471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026797, exon 4 of 4)	3' UTR (NM_026797, exon 4 of 4)	-4554.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	214.52	188.92	134.12	199.04	155.81	171.21	127.8	133.53	65.58
Merged-chr13-46930523-3	chr13	46930011	46931011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-793.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	106.97	129.02	136.89	95.81	107.76	135.84	134.14	116.29	83.69
Merged-chr7-99407771-3	chr7	99407267	99408267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362166, intron 3 of 18)	intron (NM_001362166, intron 3 of 18)	26249.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	17.16	10.14	1.85	19.57	9.33	16.08	30.63	18.57	14.36
Merged-chr1-54564134-3	chr1	54563635	54564635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-6451.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	109.83	129.48	69.37	153.84	127.82	135.84	142.59	128.23	79.32
Merged-chr10-83360133-3	chr10	83359622	83360622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026579)	promoter-TSS (NM_026579)	-99.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	28.6	23.04	20.35	45.21	22.86	40.99	60.2	48.64	14.99
Merged-chr1-40081241-3	chr1	40080746	40081746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037980, intron 3 of 3)	MTC|LTR|ERVL-MaLR	-3468.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	22.31	31.33	27.75	26.31	9.8	9.65	21.12	12.82	11.24
Merged-chr5-124328004-3	chr5	124327510	124328510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028310)	promoter-TSS (NM_028310)	-38.0	NM_001277867	269702.0	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	80.09	100.45	106.37	101.21	104.03	107.71	107.73	107.89	67.45
Merged-chr2-132282200-3	chr2	132281690	132282690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	ORR1D1|LTR|ERVL-MaLR	-3749.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	36.04	30.87	11.1	35.09	30.32	23.31	19.01	15.92	13.12
Merged-chr10-22148924-4	chr10	22148480	22149480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254744, exon 1 of 2)	exon (NM_001254744, exon 1 of 2)	290.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	49.77	34.1	38.85	31.04	37.79	40.19	108.79	90.2	64.95
Merged-chr7-17056195-3	chr7	17055697	17056697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016868, intron 2 of 14)	intron (NM_016868, intron 2 of 14)	482.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	36.04	42.39	34.22	27.66	46.65	27.33	45.42	39.35	17.49
Merged-chr3-149088718-3	chr3	149088216	149089216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134081.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	28.03	21.66	7.4	45.21	28.92	27.33	6.34	3.54	3.75
Merged-chr16-50366780-3	chr16	50366216	50367216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	65673.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	19.45	21.2	15.72	29.01	17.73	8.84	23.24	12.82	16.24
Merged-chr8-13907678-3	chr8	13907128	13908128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347316)	promoter-TSS (NM_001347316)	-111.0	NM_025785	66822.0	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	28.6	21.66	12.95	20.24	22.39	36.17	21.12	25.2	23.73
Merged-chr7-101547910-3	chr7	101547390	101548390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	7912.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	76.66	73.73	17.57	126.85	104.03	91.63	151.03	199.86	81.19
Merged-chr1-51509216-3	chr1	51508717	51509717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151621)	TTS (NR_151621)	-30818.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	10.87	4.15	3.7	8.77	4.67	0.0	3.17	2.65	2.5
Merged-chr10-14475106-3	chr10	14474608	14475608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	69928.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	11.44	12.44	9.25	15.52	7.93	10.45	15.84	7.07	13.74
Merged-chr5-31195996-3	chr5	31195477	31196477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153680, exon 6 of 15)	exon (NM_153680, exon 6 of 15)	2673.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	99.54	84.78	70.3	91.09	57.38	77.97	64.43	87.11	83.69
Merged-chr11-72538304-3	chr11	72537829	72538829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029932, exon 5 of 12)	exon (NM_029932, exon 5 of 12)	11917.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	65.79	52.53	23.12	61.4	21.93	41.8	48.58	62.79	39.35
Merged-chr2-166554121-3	chr2	166553621	166554621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10401.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	48.62	61.28	58.27	66.12	60.65	67.52	86.61	136.19	55.58
Merged-chr4-16169047-3	chr4	16168553	16169553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4943.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	57.78	64.97	80.47	41.16	64.38	87.61	78.16	78.71	46.22
Merged-chr1-177442057-3	chr1	177441576	177442576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355101)	promoter-TSS (NM_001355101)	-275.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	69.79	67.27	59.2	64.1	64.38	56.27	81.33	59.69	60.58
Merged-chr8-95887324-3	chr8	95886811	95887811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	1054.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	36.61	22.12	29.6	24.29	23.33	24.92	39.08	22.55	9.99
Merged-chr4-133911085-3	chr4	133910569	133911569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-23272.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	351.24	219.79	123.02	317.12	222.99	161.56	235.53	275.91	132.4
Merged-chr10-78364282-3	chr10	78363802	78364802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12602.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	45.76	28.57	43.47	53.98	25.19	42.6	40.14	27.41	38.1
Merged-chr8-126592158-3	chr8	126591658	126592658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164598, intron 1 of 1)	intron (NM_001164598, intron 1 of 1)	1278.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	238.55	216.57	203.49	261.79	219.26	188.09	205.96	251.59	159.25
Merged-chr16-21947563-3	chr16	21947071	21948071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025693)	promoter-TSS (NM_025693)	-19.0	NR_037773	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	40.62	38.25	14.8	44.53	52.25	40.99	31.69	30.51	12.49
Merged-chr17-88551680-3	chr17	88551166	88552166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 7 of 21)	intron (NM_028658, intron 7 of 21)	21542.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	186.49	197.22	152.62	197.02	151.62	167.19	200.68	216.22	119.28
Merged-chr11-70092219-3	chr11	70091697	70092697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313926)	promoter-TSS (NM_001313926)	-447.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	85.81	53.91	43.47	70.85	37.32	49.03	39.08	33.16	28.73
Merged-chr2-150608584-3	chr2	150608075	150609075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-8.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	44.05	54.37	26.82	47.23	45.72	45.82	60.2	76.49	46.22
Merged-chr3-149086281-3	chr3	149085785	149086785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-131650.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	89.81	76.03	60.12	87.71	73.71	72.34	35.91	32.28	26.85
Merged-chr5-138994979-3	chr5	138994497	138995497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008808)	promoter-TSS (NM_008808)	-44.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	45.76	41.47	49.02	50.6	58.31	56.27	57.03	38.47	46.22
Merged-chr2-162931289-3	chr2	162930809	162931809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026499)	promoter-TSS (NM_026499)	-199.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	565.76	561.24	363.51	520.21	579.87	360.9	473.17	460.3	253.56
Merged-chr17-34931251-3	chr17	34930744	34931744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010893)	promoter-TSS (NM_010893)	-9.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	278.59	234.54	169.27	257.07	237.92	156.74	189.06	244.52	127.4
Merged-chr6-146671607-3	chr6	146671109	146672109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14391.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	19.45	20.74	5.55	39.13	27.06	16.88	5.28	2.21	6.25
Merged-chr11-74925873-3	chr11	74925383	74926383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013761)	promoter-TSS (NM_013761)	11.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	215.09	161.74	142.44	154.51	155.81	159.95	210.18	164.93	98.05
Merged-chr8-84237238-3	chr8	84236741	84237741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172503)	promoter-TSS (NM_172503)	-199.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	465.08	371.39	306.16	444.64	333.09	235.51	398.18	419.17	186.11
Merged-chr8-35971657-2	chr8	35971168	35972168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-88711.0	NR_046181	330737.0	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	40.04	35.94	42.55	16.19	14.46	28.13	2.11	1.33	0.0
Merged-chr7-83650854-3	chr7	83650347	83651347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	4648.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	77.23	69.58	57.35	71.52	45.25	60.28	44.36	51.73	51.21
Merged-chrX-36083114-3	chrX	36082624	36083624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28984.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	78.37	53.91	21.27	62.07	33.59	55.46	43.3	34.49	30.6
Merged-chr6-120956969-3	chr6	120956456	120957456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-1888.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	44.05	48.38	35.15	31.04	27.52	35.37	46.47	46.43	19.36
Merged-chr1-191115092-3	chr1	191114622	191115622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16708.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	159.03	139.16	97.12	136.29	104.96	119.76	129.91	172.89	109.92
Merged-chr14-56887083-3	chr14	56886601	56887601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360643, intron 1 of 24)	CpG-4519	258.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	189.92	178.78	165.57	154.51	87.7	140.66	197.51	107.0	87.43
Merged-chr3-126630271-3	chr3	126629788	126630788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	L1ME2|LINE|L1	33337.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	191.64	162.2	91.57	182.85	137.62	91.63	152.09	176.87	94.3
Merged-chr15-43382632-3	chr15	43382126	43383126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94410.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	17.16	14.75	4.62	10.8	5.13	10.45	6.34	4.86	2.5
Merged-chr17-64615627-3	chr17	64615114	64616114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	13965.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	42.9	35.02	33.3	51.28	45.25	42.6	44.36	39.8	23.11
Merged-chr15-59752446-3	chr15	59751949	59752949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42510.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.59	11.52	16.65	23.62	17.73	14.47	20.07	16.8	8.74
Merged-chr19-10204773-3	chr19	10204293	10205293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271615)	promoter-TSS (NM_001271615)	591.0	NM_026919	69038.0	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	235.11	197.22	120.24	194.32	188.0	160.76	174.27	188.81	71.82
Merged-chr18-62189455-3	chr18	62188953	62189953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9353.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	301.47	221.64	142.44	234.13	130.62	143.88	218.63	201.19	124.28
Merged-chr17-26506790-1	chr17	26506290	26507290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013642, intron 3 of 3)	intron (NM_013642, intron 3 of 3)	1682.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	338.08	330.84	197.94	356.93	296.23	223.45	306.29	318.36	176.12
Merged-chr1-191397196-3	chr1	191396659	191397659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-118.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	400.44	345.59	296.91	390.66	279.91	249.17	335.87	310.4	219.83
Merged-chr17-70851231-3	chr17	70850745	70851745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009372)	promoter-TSS (NM_009372)	-35.0	NM_009372	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	393.57	358.95	246.04	371.09	317.69	292.58	327.42	387.78	179.24
Merged-chr5-27195200-3	chr5	27194718	27195718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-66717.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	19.45	9.68	26.82	14.84	13.06	20.9	39.08	19.9	18.11
Merged-chr5-105519298-3	chr5	105518829	105519829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-142.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	232.25	211.5	178.52	240.87	214.59	165.58	124.63	110.1	68.7
Merged-chr19-24271908-4	chr19	24271404	24272404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	8682.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	17.73	16.13	16.65	14.84	20.06	15.27	20.07	14.59	5.62
Merged-chr19-46056500-3	chr19	46056029	46057029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081214)	promoter-TSS (NM_001081214)	-10.0	NM_001346801	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	102.97	90.77	128.57	102.56	117.56	139.86	120.41	96.83	78.07
Merged-chr3-84040140-6	chr3	84039673	84040673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-12.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	102.4	105.06	126.72	84.34	111.03	98.06	97.17	83.13	70.57
Merged-chr8-77423065-3	chr8	77422556	77423556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-94000.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	121.85	104.14	80.47	150.46	133.42	86.01	149.98	140.61	63.7
Merged-chr1-149856944-3	chr1	149856460	149857460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 14 of 17)	intron (NM_008869, intron 14 of 17)	65479.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	12.01	7.83	9.25	3.37	5.6	7.23	5.28	3.54	9.99
Merged-chr1-9548023-3	chr1	9547508	9548508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175236)	promoter-TSS (NM_175236)	60.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	121.85	131.78	92.5	82.99	137.62	68.32	110.9	112.75	61.2
Merged-chr7-35027189-3	chr7	35026707	35027707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	29359.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	93.24	110.59	105.44	155.19	136.22	149.5	175.33	160.06	86.81
Merged-chr9-16216442-3	chr9	16215950	16216950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	161781.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	65.79	89.39	74.0	70.17	89.1	61.09	96.11	86.22	62.45
Merged-chr3-100489379-3	chr3	100488869	100489869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142952)	promoter-TSS (NM_001142952)	-177.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	84.66	62.67	19.42	51.95	45.72	35.37	96.11	77.82	33.1
Merged-chr1-87640519-3	chr1	87640004	87641004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	20192.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	237.4	238.69	151.69	273.26	232.32	141.47	184.83	206.93	127.4
Merged-chr11-62457403-3	chr11	62456914	62457914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-82.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	370.12	333.15	287.66	354.23	310.23	272.48	339.04	282.1	166.12
Merged-chr10-98898183-3	chr10	98897678	98898678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16464.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	202.51	212.88	117.47	202.42	222.06	167.99	157.37	214.45	108.67
Merged-chr9-21463467-3	chr9	21462957	21463957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 2 of 19)	intron (NM_001357721, intron 2 of 19)	33107.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	48.62	41.93	36.07	60.05	53.65	57.07	43.3	44.22	31.23
Merged-chr17-71082121-3	chr17	71081616	71082616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 17 of 36)	intron (NM_001083934, intron 17 of 36)	62559.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	114.98	106.44	71.22	153.84	118.96	122.98	136.25	168.02	79.94
Merged-chr10-41887384-3	chr10	41886883	41887883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013370)	promoter-TSS (NM_001013370)	-56.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	105.26	147.91	96.2	120.77	121.29	146.29	107.73	141.94	102.42
Merged-chr13-37434233-3	chr13	37433730	37434730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88885.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	26.89	32.25	38.85	46.56	38.72	34.56	34.85	34.93	25.61
Merged-chr8-82398735-3	chr8	82398229	82399229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	3857.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	106.97	116.58	117.47	109.3	70.91	74.75	194.34	179.96	88.06
Merged-chr8-84662892-3	chr8	84662363	84663363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010499)	promoter-TSS (NM_010499)	-11.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	226.53	182.01	147.07	210.51	155.35	188.09	261.93	324.99	133.65
Merged-chr11-73128640-3	chr11	73128146	73129146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 20 of 30)	B1F|SINE|Alu	9648.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	53.2	70.04	48.1	40.48	36.39	46.62	65.48	76.49	38.72
Merged-chr2-52993395-3	chr2	52992901	52993901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	135533.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	45.76	41.01	50.87	53.98	45.72	53.05	52.81	36.7	26.85
Merged-chr5-88554301-3	chr5	88553804	88554804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023054)	promoter-TSS (NM_023054)	-158.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	208.23	178.32	172.04	184.2	169.81	176.83	165.82	198.53	136.77
Merged-chr11-114168423-1	chr11	114167923	114168923	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29835.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	4.58	0.92	0.0	5.4	3.73	1.61	13.73	6.19	5.0
Merged-chr15-27708690-3	chr15	27708203	27709203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27161.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	42.9	41.01	26.82	61.4	39.19	37.78	36.97	35.82	13.74
Merged-chr6-22124735-3	chr6	22124230	22125230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 10 of 21)	intron (NM_001081351, intron 10 of 21)	138820.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	5.15	10.6	5.55	10.12	8.86	1.61	3.17	4.86	3.75
Merged-chr9-35282603-3	chr9	35282105	35283105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040715, intron 2 of 4)	intron (NR_040715, intron 2 of 4)	1500.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	30.32	22.58	17.57	19.57	11.2	11.25	15.84	13.71	3.75
Merged-chr16-11014725-3	chr16	11014228	11015228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5830.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	57.21	45.62	22.2	53.98	36.85	34.56	44.36	47.75	36.22
Merged-chr17-4908394-3	chr17	4907902	4908902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-86672.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	163.61	121.19	90.65	168.68	99.37	114.94	156.32	98.6	73.69
Merged-chr15-79209294-3	chr15	79208786	79209786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-19887.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	135.0	78.33	75.85	163.96	101.7	117.35	108.79	63.23	34.97
Merged-chr7-46795804-3	chr7	46795382	46796382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291075)	promoter-TSS (NM_001291075)	-1.0	NM_001005247	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	386.14	341.9	231.24	386.61	335.89	242.74	353.82	334.72	172.99
Merged-chr7-44887130-3	chr7	44886619	44887619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	5305.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	23.45	20.27	27.75	10.12	11.2	38.58	17.96	13.71	7.49
Merged-chrX-20950663-3	chrX	20950142	20951142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007922)	promoter-TSS (NM_007922)	-34.0	NM_007922	13712.0	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	28.6	39.63	37.0	35.09	25.19	37.78	34.85	26.53	19.98
Merged-chr7-67244110-3	chr7	67243594	67244594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	21478.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	215.66	211.5	80.47	184.2	170.74	92.44	144.7	193.23	69.32
Merged-chr4-83525410-3	chr4	83524900	83525900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-145.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	82.38	107.36	76.77	88.39	106.83	69.93	104.56	132.21	58.71
Merged-chr5-122820965-3	chr5	122820469	122821469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042491, intron 1 of 16)	CpG	373.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	88.1	82.94	103.59	89.06	76.51	77.16	86.61	96.83	83.69
Merged-chr11-88044498-1	chr11	88043998	88044998	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_001078167	110809.0	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	14.3	16.59	11.1	14.17	7.46	8.04	66.54	69.42	39.97
Merged-chr1-85751692-3	chr1	85751194	85752194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106172)	promoter-TSS (NR_106172)	-254.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	67.5	49.76	18.5	119.43	64.38	80.38	64.43	70.75	42.47
Merged-chr17-10041067-3	chr17	10040560	10041560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-265194.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	21.17	17.51	12.95	26.31	15.39	24.11	34.85	44.22	25.61
Merged-chr2-131491906-3	chr2	131491409	131492409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177836)	promoter-TSS (NM_001177836)	47.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	79.52	56.68	79.55	89.74	59.25	91.63	103.51	65.88	26.85
Merged-chr4-15266121-1	chr4	15265621	15266621	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	301.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	169.9	111.51	118.39	136.29	125.02	139.86	134.14	89.76	80.56
Merged-chr3-108085894-3	chr3	108085383	108086383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	-93.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	83.52	64.51	74.0	124.15	88.64	132.63	130.97	153.87	79.32
Merged-chr19-3388809-3	chr19	3388329	3389329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039658)	promoter-TSS (NM_001039658)	-28.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	303.19	240.07	189.62	268.54	242.58	232.29	239.75	198.98	171.75
Merged-chr12-86800941-3	chr12	86800441	86801441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66572.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	88.67	70.96	47.17	119.43	85.84	86.01	106.67	81.8	50.59
Merged-chr14-30631239-3	chr14	30630728	30631728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5020.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	33.18	20.27	8.32	25.64	18.19	32.15	39.08	22.99	21.23
Merged-chr2-165852686-3	chr2	165852211	165853211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252584, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	5462.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	125.85	114.74	93.42	125.5	79.31	83.59	111.96	115.41	59.33
Merged-chr6-124921746-3	chr6	124921237	124922237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	7SLRNA|srpRNA|srpRNA	-3791.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	28.6	24.88	29.6	23.62	24.26	28.13	17.96	21.67	24.98
Merged-chr16-87689424-3	chr16	87688922	87689922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9532.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	75.51	65.43	55.5	67.47	63.45	104.49	63.37	73.4	51.21
Merged-chr6-85370859-3	chr6	85370353	85371353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	3781.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	10.3	7.37	6.47	16.87	14.93	24.11	7.39	8.4	5.62
Merged-chr9-77756289-3	chr9	77755793	77756793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151778, intron 1 of 16)	intron (NR_151778, intron 1 of 16)	1758.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	21.17	21.2	16.65	24.96	22.86	22.51	19.01	10.17	11.24
Merged-chr11-82567537-3	chr11	82567024	82568024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65829.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	91.53	128.1	137.82	63.42	86.3	109.32	100.34	102.14	66.2
Merged-chr9-21031479-3	chr9	21030987	21031987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	-551.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	58.35	47.92	46.25	56.68	58.78	78.77	74.99	90.64	44.97
Merged-chr6-122952612-3	chr6	122952147	122953147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153197)	promoter-TSS (NM_153197)	3.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	229.97	232.7	115.62	230.75	231.39	115.75	190.11	213.12	69.95
Merged-chr17-64616433-3	chr17	64615933	64616933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	14784.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	42.9	35.94	20.35	70.85	47.58	36.97	45.42	33.6	18.11
Merged-chr11-53769938-3	chr11	53769434	53770434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159396)	promoter-TSS (NM_001159396)	-80.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	231.68	175.1	146.14	270.56	171.21	202.55	199.62	191.02	158.63
Merged-chr4-32657443-1	chr4	32656943	32657943	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081392, intron 1 of 101)	CpG	324.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	95.53	101.83	72.15	78.27	85.37	92.44	136.25	116.73	51.84
Merged-chr1-64925890-3	chr1	64925411	64926411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	30913.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	30.32	24.42	16.65	30.36	18.66	37.78	15.84	16.36	14.36
Merged-chrX-8145780-3	chrX	8145278	8146278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016809, exon 1 of 7)	5' UTR (NM_016809, exon 1 of 7)	102.0	NM_001166410	19652.0	Mm.128512	NM_016809	ENSMUSG00000031167	Rbm3	2600016C11Rik	RNA binding motif (RNP1, RRM) protein 3	protein-coding	319.21	335.91	190.54	297.55	336.35	188.09	247.15	372.75	143.64
Merged-chr12-79130811-3	chr12	79130345	79131345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009705)	promoter-TSS (NM_009705)	57.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	61.78	45.62	21.27	187.57	111.5	130.21	55.98	61.46	39.35
Merged-chr10-99632761-3	chr10	99632281	99633281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	9139.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	40.62	24.88	20.35	27.66	41.05	26.53	48.58	42.01	39.35
Merged-chr12-79625905-3	chr12	79625416	79626416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	298817.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	91.53	99.07	82.32	68.82	62.98	94.04	73.93	70.75	63.7
Merged-chr13-10599459-1	chr13	10598959	10599959	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-238656.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	2.86	5.99	8.32	14.17	8.86	9.65	9.51	9.73	11.24
Merged-chr6-59209490-3	chr6	59209000	59210000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081145, exon 2 of 2)	5' UTR (NM_001081145, exon 2 of 2)	630.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	282.59	348.35	192.39	327.91	322.82	203.36	253.48	302.44	138.02
Merged-chr16-57547439-3	chr16	57546908	57547908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1834.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	112.12	161.74	138.74	144.39	116.16	157.54	132.02	141.94	87.43
Merged-chr10-21827118-3	chr10	21826615	21827615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55069.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	117.84	87.09	73.07	121.45	95.17	154.33	153.15	143.7	82.44
Merged-chr2-146855843-3	chr2	146855354	146856354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-35.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	68.65	70.96	49.95	72.87	69.98	69.93	39.08	36.26	17.49
Merged-chr7-98171552-3	chr7	98171049	98172049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007602, intron 1 of 12)	intron (NM_007602, intron 1 of 12)	-5645.0	NR_045972	330599.0	Mm.406608	NR_045969		Gm16938	-	predicted gene, 16938	ncRNA	59.49	52.99	65.67	51.28	45.72	47.42	43.3	52.18	33.72
Merged-chr8-71628437-3	chr8	71627937	71628937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	2669.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	179.05	165.42	101.74	254.37	154.88	139.06	236.59	222.41	73.69
Merged-chr17-17448869-3	chr17	17448374	17449374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46188.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	178.48	160.81	94.35	170.7	146.95	114.94	138.36	148.13	69.95
Merged-chr6-135276960-1	chr6	135276460	135277460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22624.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.72	4.15	7.4	16.19	11.66	8.04	2.11	3.54	7.49
Merged-chr1-171840619-3	chr1	171840116	171841116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001252472, exon 2 of 3)	5' UTR (NM_001252472, exon 2 of 3)	919.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	184.77	235.92	126.72	182.17	199.2	148.7	220.74	298.02	106.17
Merged-chr7-118491973-3	chr7	118491479	118492479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033380)	promoter-TSS (NM_001033380)	-4.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	219.1	235.92	227.54	226.71	216.46	225.86	201.73	198.98	159.25
Merged-chr14-73172701-3	chr14	73172187	73173187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	29902.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	158.46	168.65	90.65	180.15	146.48	127.0	148.92	185.27	108.04
Merged-chr15-86168018-3	chr15	86167525	86168525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-17703.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	271.73	229.93	207.19	323.19	296.23	249.17	367.55	406.35	175.49
Merged-chr2-166181223-3	chr2	166180649	166181649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25466.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	128.14	107.36	70.3	141.02	99.37	83.59	132.02	155.64	71.2
Merged-chr12-117517428-3	chr12	117516936	117517936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 1 of 27)	MLT1B|LTR|ERVL-MaLR	957.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	58.35	61.75	44.4	56.0	44.78	70.73	158.43	148.57	58.71
Merged-chr9-110654166-3	chr9	110653667	110654667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183276)	promoter-TSS (NM_183276)	-6.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	204.8	159.43	128.57	156.53	94.7	119.76	151.03	133.53	76.19
Merged-chr18-49755617-3	chr18	49755107	49756107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-6.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	187.63	175.1	161.87	194.32	150.22	143.88	204.9	168.91	112.42
Merged-chr16-95728990-3	chr16	95728495	95729495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26588.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	106.4	61.75	51.8	95.14	51.78	54.66	98.23	61.02	46.22
Merged-chr18-11794452-3	chr18	11793978	11794978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44796.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	70.93	88.47	61.05	64.1	69.51	65.11	107.73	100.81	107.42
Merged-chr1-138995361-1	chr1	138994861	138995861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	B4A|SINE|B4	17704.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	19.45	10.14	24.05	13.49	13.06	12.86	23.24	6.63	19.36
Merged-chr13-49187638-3	chr13	49187145	49188145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	98.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	481.1	353.42	283.96	501.32	376.01	246.76	327.42	351.08	172.99
Merged-chr1-106932155-3	chr1	106931661	106932661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	32.04	14.75	38.85	25.64	19.59	39.39	26.4	25.65	31.23
Merged-chr1-128707905-3	chr1	128707420	128708420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115621.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	27.46	17.05	17.57	43.18	19.59	27.33	8.45	11.94	6.25
Merged-chr5-93267593-3	chr5	93267091	93268091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007635)	promoter-TSS (NM_007635)	18.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	205.94	247.9	185.92	256.39	257.05	234.71	200.68	235.68	115.54
Merged-chr3-88579643-3	chr3	88579143	88580143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356316)	promoter-TSS (NM_001356316)	35.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	84.66	74.19	46.25	51.95	71.84	84.4	105.62	80.92	53.71
Merged-chr1-163929952-3	chr1	163929504	163930504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028776, exon 1 of 14)	5' UTR (NM_028776, exon 1 of 14)	239.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	217.38	310.57	148.92	242.22	292.03	155.93	251.37	211.8	138.02
Merged-chr4-3681736-3	chr4	3681234	3682234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	3613.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	160.18	145.15	90.65	135.62	108.23	136.64	141.53	181.29	104.92
Merged-chr19-29419631-3	chr19	29419117	29420117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	L1MB7|LINE|L1	8698.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	209.94	258.5	111.92	253.02	211.79	134.23	292.56	353.73	127.4
Merged-chr2-128339450-3	chr2	128338959	128339959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	89892.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	98.97	89.85	71.22	190.27	180.54	132.63	129.91	182.62	91.18
Merged-chr7-19629449-3	chr7	19628940	19629940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009046)	promoter-TSS (NM_009046)	-2.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	601.23	448.34	313.56	483.77	362.48	342.41	372.83	333.84	211.71
Merged-chr6-67266884-3	chr6	67266335	67267335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-144.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	48.62	69.12	73.07	55.33	70.91	64.3	83.44	51.29	58.08
Merged-chr4-33189377-1	chr4	33188877	33189877	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	360.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	4.58	1.38	5.55	2.7	1.4	1.61	5.28	0.88	3.75
Merged-chr5-113783857-3	chr5	113783361	113784361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11049.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	13.16	19.81	12.95	21.59	13.53	12.06	25.35	11.94	9.37
Merged-chr4-42965532-3	chr4	42965016	42966016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4430.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	7.44	7.37	12.95	10.8	2.8	5.63	35.91	21.22	10.62
Merged-chr1-51501510-3	chr1	51500998	51501998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23099.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	110.41	131.32	90.65	116.73	135.75	117.35	142.59	133.09	103.05
Merged-chr14-54408520-3	chr14	54408014	54409014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001253680, exon 2 of 10)	exon (NM_001253680, exon 2 of 10)	958.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	140.73	181.09	147.07	155.86	156.75	187.28	151.03	176.87	95.55
Merged-chr16-38522721-3	chr16	38522233	38523233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024273)	promoter-TSS (NM_024273)	-70.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	169.9	165.88	141.52	149.11	147.88	178.44	221.8	212.68	125.53
Merged-chr5-64241132-2	chr5	64240627	64241627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	10770.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	180.2	192.15	142.44	200.39	157.21	159.15	143.64	166.25	104.3
Merged-chr11-115165158-3	chr11	115164656	115165656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1815.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	56.63	38.71	26.82	52.63	22.39	24.92	46.47	41.56	18.11
Merged-chr17-23193219-3	chr17	23192723	23193723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	5.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	17.73	24.88	8.32	13.49	18.66	19.29	27.46	19.01	13.74
Merged-chr12-84243626-1	chr12	84243126	84244126	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24745.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	29.17	17.51	16.65	20.24	33.12	6.43	14.79	15.03	13.12
Merged-chr3-107760264-3	chr3	107759725	107760725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113530, exon 1 of 9)	5' UTR (NM_001113530, exon 1 of 9)	244.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	66.36	30.87	16.65	37.78	26.59	20.9	44.36	21.22	18.74
Merged-chr12-99967284-3	chr12	99966764	99967764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	2765.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	109.26	71.88	76.77	129.55	99.37	129.41	142.59	112.75	79.94
Merged-chr13-24791508-3	chr13	24791009	24792009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-10148.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	81.8	98.15	54.57	79.62	60.18	87.61	98.23	90.64	84.94
Merged-chr3-145938015-3	chr3	145937566	145938566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356284)	promoter-TSS (NM_001356284)	52.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	129.28	116.12	111.92	151.14	115.23	96.45	139.42	88.88	86.81
Merged-chr4-83269839-3	chr4	83269351	83270351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	B4|SINE|B4	54338.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	36.04	44.24	29.6	39.13	39.65	46.62	26.4	27.41	24.36
Merged-chr1-66862892-3	chr1	66862402	66863402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	CpG	407.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	109.83	66.81	86.95	226.71	191.27	132.63	164.76	124.69	96.8
Merged-chr5-135632639-3	chr5	135632148	135633148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146002)	promoter-TSS (NM_146002)	-6.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	24.03	11.52	9.25	26.31	21.93	30.54	19.01	19.46	12.49
Merged-chr13-59769852-3	chr13	59769366	59770366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015349)	promoter-TSS (NR_015349)	-77.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	562.33	604.55	323.73	459.48	568.67	349.65	438.32	535.46	225.45
Merged-chr4-130796127-3	chr4	130795636	130796636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	3599.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	300.9	321.17	246.96	338.71	284.1	344.02	390.79	501.86	197.35
Merged-chr2-156392970-3	chr2	156392481	156393481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-2.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	101.25	73.26	55.5	74.22	55.98	61.89	87.66	110.54	62.45
Merged-chr7-19830914-3	chr7	19830418	19831418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8163.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	85.24	58.52	61.05	95.81	60.18	77.16	60.2	78.26	38.1
Merged-chr1-192136717-3	chr1	192136222	192137222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033536)	promoter-TSS (NR_033536)	-176.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	29.17	27.19	57.35	43.18	40.59	58.68	35.91	28.3	21.86
Merged-chr1-127204970-3	chr1	127204473	127205473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145128)	promoter-TSS (NM_145128)	-13.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	71.51	76.95	98.05	65.45	63.91	81.18	76.05	81.36	63.08
Merged-chr8-124021277-3	chr8	124020779	124021779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357315)	promoter-TSS (NM_001357315)	118.0	NM_133966	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	106.4	116.12	136.89	143.04	125.96	124.59	194.34	113.64	79.94
Merged-chr3-38485014-3	chr3	38484507	38485507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167883)	promoter-TSS (NM_001167883)	-191.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	61.21	34.56	34.22	58.7	42.45	29.74	73.93	19.9	19.36
Merged-chr2-132110908-3	chr2	132110399	132111399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	34209.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	133.29	122.11	82.32	131.57	102.17	78.77	144.7	180.4	46.84
Merged-chr18-36515815-3	chr18	36515317	36516317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010415)	promoter-TSS (NM_010415)	-12.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	91.53	57.14	60.12	101.21	53.18	61.09	101.39	68.09	49.96
Merged-chr8-85557324-3	chr8	85556828	85557828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2057.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	90.38	151.14	110.99	121.45	133.89	103.69	174.27	226.39	85.56
Merged-chr8-71630032-3	chr8	71629527	71630527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 41 of 41)	intron (NM_001029873, intron 41 of 41)	1079.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	316.92	298.59	277.49	407.53	292.5	324.73	349.6	447.03	176.74
Merged-chr10-128096824-3	chr10	128096323	128097323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	CpG	4040.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	158.46	105.98	158.17	74.22	64.84	91.63	110.9	97.28	76.82
Merged-chr15-68362632-3	chr15	68362143	68363143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21354.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	177.91	256.66	164.64	213.21	194.07	147.9	242.92	261.76	137.4
Merged-chr17-27012154-3	chr17	27011665	27012665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5870.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	24.03	27.65	12.95	48.58	20.53	25.72	41.19	29.63	20.61
Merged-chr2-83744518-3	chr2	83744005	83745005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	20108.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	30.32	25.34	18.5	29.69	25.66	23.31	20.07	11.5	14.99
Merged-chr8-83740358-4	chr8	83739939	83740939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	872.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	229.39	290.75	165.57	258.42	193.13	136.64	273.55	358.6	158.63
Merged-chr8-123373749-3	chr8	123373254	123374254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037877)	promoter-TSS (NM_001037877)	43.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	439.91	433.14	248.81	389.99	370.41	287.76	355.93	366.56	177.37
Merged-chr9-89256743-3	chr9	89256240	89257240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	45356.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	134.43	128.56	49.95	124.15	110.56	90.83	107.73	88.88	67.45
Merged-chr19-60790742-3	chr19	60790253	60791253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010123)	promoter-TSS (NM_010123)	-60.0	NM_010123	13669.0	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	563.47	615.15	430.1	566.76	600.4	399.48	519.64	504.95	261.68
Merged-chr16-23999626-3	chr16	23999089	24000089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10737.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	26.31	22.12	9.25	12.14	12.13	11.25	11.62	5.75	6.25
Merged-chr4-130107514-3	chr4	130107021	130108021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026441)	promoter-TSS (NM_026441)	-35.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	203.08	226.71	139.67	183.52	184.74	127.8	193.28	223.74	104.3
Merged-chr4-126019200-3	chr4	126018700	126019700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5459.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	109.26	106.44	95.27	123.47	102.63	102.08	136.25	141.94	115.54
Merged-chr14-45318705-3	chr14	45318201	45319201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015774)	promoter-TSS (NM_015774)	-129.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	121.28	89.39	110.99	141.02	78.37	108.51	143.64	83.13	58.08
Merged-chr9-99493463-3	chr9	99492977	99493977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	23056.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	95.53	117.96	49.95	93.79	73.71	60.28	82.38	120.71	89.93
Merged-chr15-73621248-1	chr15	73620748	73621748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	3496.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	143.59	137.77	90.65	135.62	112.9	165.58	175.33	190.13	123.03
Merged-chr2-156180408-3	chr2	156179904	156180904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291114)	promoter-TSS (NM_001291114)	-166.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	376.41	346.51	203.49	395.38	344.75	271.68	295.73	349.31	161.13
Merged-chr7-19458872-3	chr7	19458370	19459370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172279)	promoter-TSS (NM_172279)	-376.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	124.14	81.1	83.25	101.88	79.77	106.1	185.89	143.7	106.17
Merged-chr4-133166450-1	chr4	133165950	133166950	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-29205.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	60.64	80.18	63.82	89.06	67.18	102.08	72.88	80.92	46.84
Merged-chr18-15214466-3	chr18	15213983	15214983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63037.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	55.49	60.82	75.85	41.83	43.85	57.87	44.36	44.66	57.46
Merged-chr17-35861478-5	chr17	35860922	35861922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134122, exon 1 of 4)	exon (NM_134122, exon 1 of 4)	104.0	NM_134122	106582.0	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	68.65	70.5	73.07	91.76	67.18	85.2	57.03	73.4	49.96
Merged-chr7-44929784-3	chr7	44929277	44930277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007458)	promoter-TSS (NM_007458)	-287.0	NM_001077264	11771.0	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	149.88	124.41	123.94	126.17	88.17	97.26	155.26	109.22	68.7
Merged-chr12-17712914-3	chr12	17712400	17713400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	Eulor9B|DNA|DNA	22091.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	90.38	102.29	57.35	72.19	51.78	88.42	126.74	144.59	70.57
Merged-chr1-86407148-3	chr1	86406656	86407656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17795.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	181.34	164.04	126.72	197.69	182.4	177.64	127.8	185.71	99.92
Merged-chrUn_JH584304-44905-1	chrUn_JH584304	44405	45405	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14784.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	39.08	30.07	0.0
Merged-chr7-81861287-3	chr7	81860811	81861811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	-1376.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	143.59	109.67	103.59	135.62	102.63	115.75	83.44	65.0	69.32
Merged-chr5-90931234-3	chr5	90930707	90931707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	11.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	112.12	37.32	37.0	147.76	62.51	50.64	40.14	17.24	6.87
Merged-chr2-157448014-2	chr2	157447515	157448515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	B3A|SINE|B2	23722.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	55.49	31.33	40.7	75.57	43.85	35.37	23.24	10.17	13.74
Merged-chr1-90975152-3	chr1	90974672	90975672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5552.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	25.17	12.44	1.85	19.57	18.19	16.08	10.56	11.5	2.5
Merged-chr16-44173638-3	chr16	44173125	44174125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	CpG	228.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	120.13	64.97	122.09	122.8	68.58	80.38	98.23	49.96	31.23
Merged-chr4-120854855-3	chr4	120854362	120855362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182929)	promoter-TSS (NM_182929)	63.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	66.93	54.83	85.1	60.72	55.05	69.93	71.82	45.1	33.1
Merged-chr10-12875058-3	chr10	12874542	12875542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13307.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	74.94	33.18	37.0	70.85	28.92	19.29	59.15	41.12	27.48
Merged-chr17-35439064-3	chr17	35438558	35439558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201460)	promoter-TSS (NM_001201460)	-97.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	125.85	63.13	14.8	67.47	22.39	9.65	168.99	130.44	36.85
Merged-chr3-105900906-3	chr3	105900403	105901403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3518.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	68.07	59.44	38.85	70.85	52.72	32.96	44.36	51.73	28.1
Merged-chr2-13537875-1	chr2	13537375	13538375	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	6789.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	40.04	51.61	42.55	43.86	35.92	52.25	41.19	56.6	44.97
Merged-chr5-135686634-3	chr5	135686137	135687137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2508.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	55.49	60.36	73.07	93.11	76.97	94.04	89.78	99.49	38.72
Merged-chr19-5726326-3	chr19	5725818	5726818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053252)	promoter-TSS (NM_053252)	-1.0	NM_053252	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	121.28	120.26	125.79	109.98	82.11	127.0	94.0	118.94	111.17
Merged-chr17-10390897-3	chr17	10390401	10391401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65315.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	102.97	85.71	49.95	116.73	111.96	87.61	87.66	92.41	66.82
Merged-chr11-119375589-3	chr11	119375088	119376088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 12 of 16)	intron (NM_178743, intron 12 of 16)	-14884.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	28.6	23.96	23.12	66.12	23.33	52.25	55.98	64.11	46.22
Merged-chr8-70282909-3	chr8	70282404	70283404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011984)	promoter-TSS (NM_011984)	-95.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	41.19	22.58	33.3	60.05	27.52	50.64	45.42	17.24	14.36
Merged-chr11-19926129-3	chr11	19925631	19926631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	1689.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	350.1	415.63	258.99	386.61	352.21	249.98	229.19	262.65	143.64
Merged-chr3-138527152-3	chr3	138526643	138527643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	-125.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	315.77	337.29	308.93	313.74	355.95	210.59	372.83	395.74	177.99
Merged-chr1-149911265-3	chr1	149910774	149911774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	11165.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	37.76	42.39	20.35	36.43	37.79	40.99	36.97	45.1	33.1
Merged-chr1-53742258-2	chr1	53741754	53742754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35470.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	51.48	50.69	20.35	3.37	1.4	6.43	59.15	51.29	49.34
Merged-chr8-114440092-2	chr8	114439589	114440589	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 1 of 8)	CpG	437.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	33.75	35.48	25.9	46.56	36.39	32.15	36.97	46.87	34.35
Merged-chr3-65516013-3	chr3	65515509	65516509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12438.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	20.02	13.36	29.6	31.71	13.06	25.72	27.46	17.69	9.99
Merged-chr11-88204350-3	chr11	88203842	88204842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-46.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	217.95	262.19	184.99	204.44	207.13	202.55	234.47	235.23	116.79
Merged-chr8-13494488-3	chr8	13493985	13494985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019521)	promoter-TSS (NM_019521)	50.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	12.01	11.06	11.1	16.87	20.06	29.74	5.28	5.75	6.87
Merged-chr2-19630714-3	chr2	19630212	19631212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27185.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	89.81	107.82	73.07	72.19	77.44	61.09	71.82	110.98	83.69
Merged-chr13-53377391-3	chr13	53376905	53377905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009269)	promoter-TSS (NM_009269)	-44.0	NM_009269	268656.0	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1|SPT1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	73.22	72.34	30.52	74.22	58.31	63.5	86.61	84.01	40.59
Merged-chr11-11788807-3	chr11	11788284	11789284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20178.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	22.88	27.19	16.65	18.22	21.93	14.47	27.46	16.36	6.25
Merged-chr17-64622479-3	chr17	64621960	64622960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	20811.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	177.91	187.08	98.05	151.14	133.89	129.41	137.3	189.25	86.81
Merged-chr11-68691838-3	chr11	68691384	68692384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-31.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	36.61	29.49	6.47	66.12	68.58	45.01	53.87	61.02	28.1
Merged-chr1-21218693-3	chr1	21218184	21219184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029398, exon 1 of 5)	5' UTR (NM_029398, exon 1 of 5)	109.0	NM_029398	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	70.93	81.56	59.2	88.39	74.64	64.3	73.93	49.96	54.33
Merged-chr11-115475628-3	chr11	115475096	115476096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361594)	promoter-TSS (NM_001361594)	-71.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	141.87	109.21	139.67	107.95	89.57	123.78	92.94	152.99	74.32
Merged-chr2-59882567-3	chr2	59882069	59883069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028118)	promoter-TSS (NM_028118)	37.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	70.93	75.11	59.2	71.52	67.64	69.93	72.88	58.81	31.85
Merged-chr6-67195242-1	chr6	67194742	67195742	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71737.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.57	5.07	2.77	8.1	4.2	3.22	4.22	3.98	7.49
Merged-chr19-34464629-3	chr19	34464115	34465115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	10520.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	22.88	22.12	11.1	14.17	14.0	28.13	10.56	15.03	17.49
Merged-chr11-72215144-3	chr11	72214655	72215655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163728)	promoter-TSS (NM_001163728)	17.0	NM_001163728	75304.0	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	233.97	280.16	178.52	158.56	152.55	89.22	144.7	163.6	72.45
Merged-chr2-131222722-3	chr2	131222216	131223216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-11347.0	NM_001206383	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	25.74	19.35	16.65	26.99	22.86	19.29	32.74	26.97	16.24
Merged-chr7-35081189-3	chr7	35080667	35081667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24601.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	184.77	252.51	104.52	194.99	203.4	154.33	174.27	206.49	103.05
Merged-chr9-122294544-3	chr9	122294044	122295044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133979)	promoter-TSS (NM_133979)	-121.0	NM_133979	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	88.1	68.2	41.62	70.85	93.77	65.11	83.44	68.54	28.73
Merged-chr16-23233602-3	chr16	23233079	23234079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	7558.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	98.97	71.42	75.85	92.44	49.92	47.42	74.99	77.82	56.83
Merged-chr18-76237522-3	chr18	76237018	76238018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-4183.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	23.45	25.8	32.37	29.69	36.85	44.21	34.85	23.88	23.73
Merged-chr7-63936517-3	chr7	63936015	63937015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	2400.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	137.86	125.33	98.97	132.92	92.37	102.88	143.64	141.05	84.94
Merged-chr4-3683422-1	chr4	3682922	3683922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5301.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	155.03	140.54	65.67	155.86	90.5	113.33	144.7	157.41	129.28
Merged-chr8-8690560-3	chr8	8690075	8691075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176849)	promoter-TSS (NM_176849)	-38.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	183.06	156.21	114.69	181.5	133.42	95.65	158.43	78.26	66.82
Merged-chr13-73937865-3	chr13	73937341	73938341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027182)	promoter-TSS (NM_027182)	30.0	NM_001308041	105246.0	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	77.8	69.58	51.8	103.91	62.98	83.59	103.51	74.73	70.57
Merged-chr19-8880911-3	chr19	8880392	8881392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160356)	promoter-TSS (NM_001160356)	41.0	NM_001160356	107197.0	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	41.19	39.63	48.1	42.51	48.05	73.14	49.64	50.41	50.59
Merged-chr14-70402557-3	chr14	70402002	70403002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 10 of 22)	B3A|SINE|B2	26592.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	76.66	48.38	27.75	76.24	49.45	38.58	40.14	38.91	33.1
Merged-chr11-44415443-1	chr11	44414943	44415943	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001303244)	TTS (NM_001303244)	15380.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	197.36	223.48	162.79	196.34	202.93	164.78	203.84	249.38	136.77
Merged-chr5-138694900-1	chr5	138694400	138695400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60181.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.0	1.38	2.77	10.12	2.33	4.82	3.17	4.86	3.12
Merged-chr19-32712777-3	chr19	32712288	32713288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	-490.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	239.12	188.0	157.24	188.25	157.68	123.78	181.66	194.11	98.05
Merged-chr10-19062245-3	chr10	19061726	19062726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46816.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	302.04	322.09	134.12	305.65	277.57	183.26	243.98	404.14	107.42
Merged-chr1-38987695-3	chr1	38987221	38988221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-93.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	76.66	100.91	80.47	72.19	72.78	91.63	95.06	94.18	51.21
Merged-chr10-13474387-3	chr10	13473884	13474884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195065)	promoter-TSS (NM_001195065)	12.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	16.59	8.29	10.17	20.92	12.6	8.84	9.51	6.19	14.99
Merged-chr15-98567829-3	chr15	98567320	98568320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009833)	promoter-TSS (NM_009833)	-184.0	NM_009833	12455.0	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	380.42	419.77	348.71	357.6	344.75	270.07	303.13	379.38	239.19
Merged-chr2-112232821-3	chr2	112232319	112233319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7022.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	38.33	42.39	44.4	26.99	20.99	22.51	31.69	34.93	33.72
Merged-chr2-71814199-3	chr2	71813704	71814704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	27265.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	5.72	0.92	2.77	6.07	6.53	0.0	7.39	3.1	6.87
Merged-chr11-50025055-3	chr11	50024564	50025564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290749)	promoter-TSS (NM_001290749)	-267.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	268.29	203.21	163.72	289.45	201.07	233.1	297.84	222.85	112.42
Merged-chr3-89090009-3	chr3	89089507	89090507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	24.0	NM_001083808	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	168.18	164.04	117.47	154.51	136.22	105.3	154.2	137.96	74.32
Merged-chr5-73492560-3	chr5	73492046	73493046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178896, intron 1 of 10)	CpG	1520.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	38.9	44.7	37.92	38.46	44.78	31.35	68.65	62.35	36.22
Merged-chr2-75733431-3	chr2	75732945	75733945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28782.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	156.17	129.02	86.02	185.55	116.16	135.84	219.69	206.05	96.18
Merged-chr10-118869802-3	chr10	118869280	118870280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014390)	promoter-TSS (NM_001014390)	-877.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	271.15	193.99	220.14	334.66	202.46	163.97	227.08	216.22	98.68
Merged-chr10-62920656-3	chr10	62920161	62921161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175194)	promoter-TSS (NM_175194)	28.0	NM_175194	73132.0	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	159.6	125.79	123.02	147.09	134.35	143.07	157.37	161.39	73.07
Merged-chr8-117343722-3	chr8	117343244	117344244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-5426.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	266.58	246.52	135.04	255.72	218.79	187.28	219.69	288.29	124.91
Merged-chr3-59205309-3	chr3	59204808	59205808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5574.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	160.18	182.01	96.2	190.27	142.29	116.55	151.03	148.57	85.56
Merged-chr15-99033657-3	chr15	99033150	99034150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	3759.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	48.05	66.81	29.6	81.64	46.65	82.79	49.64	49.96	41.22
Merged-chr9-61370642-3	chr9	61370146	61371146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1720.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	80.09	91.7	80.47	66.8	68.11	80.38	77.1	111.43	47.46
Merged-chr6-87743102-3	chr6	87742597	87743597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12228.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	66.36	32.72	26.82	90.41	29.86	12.86	41.19	32.72	13.12
Merged-chr1-191397662-1	chr1	191397162	191398162	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144880)	promoter-TSS (NM_144880)	-621.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	401.01	388.9	237.71	385.94	332.62	275.7	325.31	395.3	204.85
Merged-chr17-53488806-3	chr17	53488305	53489305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025887, intron 2 of 5)	ID_B1|SINE|B4	9571.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	67.5	83.4	55.5	77.59	52.72	56.27	89.78	91.53	66.2
Merged-chr6-135296539-3	chr6	135296043	135297043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13841.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	113.27	101.37	88.8	155.19	160.95	130.21	77.1	64.56	57.46
Merged-chr14-67890008-3	chr14	67889608	67890608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	-30363.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	41.19	30.87	25.9	39.13	18.66	25.72	20.07	14.15	15.61
Merged-chr11-106788480-3	chr11	106787972	106788972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177088)	promoter-TSS (NM_177088)	22.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	362.68	252.51	176.67	299.57	232.32	226.67	221.8	275.47	172.37
Merged-chr9-45274830-3	chr9	45274374	45275374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5725.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	101.25	95.38	66.6	138.32	91.9	84.4	90.83	85.78	51.21
Merged-chr9-48817482-3	chr9	48816981	48817981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	18464.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	31.46	30.41	18.5	49.25	33.59	29.74	45.42	33.6	13.12
Merged-chr11-11558869-3	chr11	11558378	11559378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68960.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	19.45	20.74	9.25	12.14	13.06	16.88	23.24	10.61	7.49
Merged-chr16-32868365-3	chr16	32867871	32868871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001200038)	promoter-TSS (NM_001200038)	-5.0	NM_172615	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	49.77	58.52	50.87	58.7	43.85	45.01	58.09	78.71	36.22
Merged-chr7-45704407-1	chr7	45703907	45704907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016974)	promoter-TSS (NM_016974)	-840.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	112.12	126.25	104.52	87.71	97.03	114.14	118.29	187.92	80.56
Merged-chr5-100429653-3	chr5	100429162	100430162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_034038)	promoter-TSS (NR_034038)	-127.0	NR_034038	100503199.0	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	80.66	99.07	95.27	67.47	94.7	143.07	99.28	103.91	79.94
Merged-chr15-95850747-3	chr15	95850229	95851229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	L1MB3|LINE|L1	-20657.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	116.13	121.19	101.74	122.8	103.1	94.85	180.61	167.58	59.95
Merged-chr7-122705985-2	chr7	122705483	122706483	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019430, intron 1 of 3)	L1M2|LINE|L1	34239.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	8.58	0.46	3.7	8.1	2.33	8.04	9.51	6.63	8.12
Merged-chr6-123252973-3	chr6	123252463	123253463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9144.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	84.66	89.85	44.4	101.88	79.77	75.56	98.23	99.05	46.22
Merged-chr14-59438740-3	chr14	59438248	59439248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320720, intron 1 of 13)	intron (NM_001320720, intron 1 of 13)	2132.0	NM_001320725	107303348.0		NM_001320725		Gm45935	Setdb2-phf11c	predicted gene, 45935	protein-coding	18.31	31.79	35.15	20.24	19.59	26.53	25.35	23.88	21.86
Merged-chr5-74260574-1	chr5	74260074	74261074	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	65248.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	1.14	0.46	8.32	11.47	14.46	20.9	2.11	1.33	2.5
Merged-chr6-120038537-5	chr6	120038020	120039020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199083, exon 1 of 28)	5' UTR (NM_001199083, exon 1 of 28)	135.0	NM_001185020	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	149.31	122.57	118.39	188.25	122.23	138.25	165.82	118.5	91.81
Merged-chr10-81297293-3	chr10	81296782	81297782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	4319.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	291.75	245.14	192.39	347.48	312.09	267.66	235.53	273.7	141.77
Merged-chr13-99006428-2	chr13	99005906	99006906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-21841.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	104.69	82.48	80.47	143.04	84.9	98.87	148.92	88.43	73.69
Merged-chr1-71731167-3	chr1	71730665	71731665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77830.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	12.59	10.6	1.85	8.77	6.53	16.88	6.34	4.86	6.87
Merged-chr16-11343506-3	chr16	11342996	11343996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	MIR3|SINE|MIR	20592.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	168.18	165.42	116.54	199.72	174.01	145.49	143.64	168.02	76.82
Merged-chr10-111972664-3	chr10	111972161	111973161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178610)	promoter-TSS (NM_178610)	-34.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	85.24	94.0	101.74	85.01	89.1	51.44	61.26	82.24	71.2
Merged-chr6-114045123-3	chr6	114044608	114045608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_009723	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	20.02	10.14	20.35	18.89	7.93	16.08	9.51	10.17	11.87
Merged-chr7-19332974-3	chr7	19332481	19333481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12090.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	46.91	34.56	31.45	59.38	38.72	20.9	80.27	87.11	37.47
Merged-chr3-51184971-3	chr3	51184480	51185480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-39467.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	139.58	152.98	71.22	156.53	173.07	138.25	288.34	406.79	204.85
Merged-chr8-72295877-3	chr8	72295368	72296368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23194.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	247.7	237.3	155.39	308.35	193.13	166.38	211.24	265.74	143.64
Merged-chr19-41016537-3	chr19	41016054	41017054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	32.61	19.81	5.55	41.83	22.39	13.66	3.17	3.54	3.75
Merged-chr16-93607875-3	chr16	93607382	93608382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007620)	promoter-TSS (NM_007620)	45.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	69.79	57.14	24.97	80.97	70.91	57.87	113.01	93.3	44.34
Merged-chr19-60982118-3	chr19	60981600	60982600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	92351.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	18.31	11.06	12.95	18.22	16.33	20.09	12.67	10.61	8.12
Merged-chr10-98894616-3	chr10	98894116	98895116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-20026.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	131.0	162.2	81.4	156.53	134.82	98.87	120.41	169.79	90.56
Merged-chr18-34927721-3	chr18	34927222	34928222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	PB1D7|SINE|Alu	4281.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	42.33	84.32	52.72	49.93	62.05	49.83	62.31	67.65	50.59
Merged-chr12-26449675-3	chr12	26449164	26450164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 3 of 5)	intron (NM_021384, intron 3 of 5)	6788.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	30.32	27.65	27.75	22.94	26.59	22.51	15.84	17.69	9.99
Merged-chr4-128618716-3	chr4	128618252	128619252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-133.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	265.43	182.93	173.89	186.22	96.1	105.3	168.99	144.15	106.17
Merged-chr5-130172472-3	chr5	130171964	130172964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359233, intron 1 of 7)	intron (NM_001359233, intron 1 of 7)	645.0	NM_001359233	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	413.59	329.92	236.79	345.46	356.88	251.59	339.04	293.16	175.49
Merged-chr4-15945387-3	chr4	15944858	15945858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026172, exon 1 of 10)	5' UTR (NM_026172, exon 1 of 10)	149.0	NM_026172	67460.0	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	26.31	19.35	15.72	22.27	26.59	32.15	30.63	17.69	14.99
Merged-chr1-9944124-3	chr1	9943623	9944623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-5.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	56.63	59.9	56.42	64.1	55.51	57.87	104.56	85.34	67.45
Merged-chr19-4145152-3	chr19	4144643	4145643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	-3520.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	106.4	98.61	67.52	132.92	85.37	111.73	91.89	104.79	114.29
Merged-chr15-100040920-3	chr15	100040456	100041456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	2292.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	216.81	220.25	197.02	198.37	159.08	176.03	182.72	256.01	109.92
Merged-chr7-3709997-3	chr7	3709487	3710487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5946.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	62.35	71.88	26.82	39.81	26.12	52.25	51.75	54.39	60.58
Merged-chr6-134556381-1	chr6	134555881	134556881	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	MER92A|LTR|ERV1	10532.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	9.72	6.91	1.85	8.1	2.33	14.47	138.36	165.37	71.2
Merged-chr7-19665016-3	chr7	19664506	19665506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	24.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	51.48	60.36	53.65	45.88	42.92	74.75	84.49	87.55	44.97
Merged-chr16-55664090-3	chr16	55663596	55664596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158042.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	49.77	53.45	45.32	56.0	56.45	65.91	66.54	45.99	41.84
Merged-chr1-153749331-3	chr1	153748826	153749826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-100.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	237.4	201.36	82.32	190.27	178.21	114.14	102.45	137.07	83.06
Merged-chr5-115513923-3	chr5	115513418	115514418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	MER2|DNA|TcMar-Tigger	7242.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	193.35	149.29	123.02	400.78	311.16	262.04	207.01	203.4	107.42
Merged-chr16-10786539-3	chr16	10786036	10787036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-1000.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	65.21	79.25	61.97	49.93	66.24	67.52	78.16	105.68	49.96
Merged-chr1-143702889-3	chr1	143702384	143703384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145991)	promoter-TSS (NM_145991)	9.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	127.0	61.75	87.87	101.21	55.05	58.68	82.38	50.41	43.09
Merged-chrUn_JH584304-9953-1	chrUn_JH584304	9453	10453	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	49736.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	778.41	656.62	0.0
Merged-chr10-40525954-3	chr10	40525437	40526437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44425.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	26.89	22.58	24.05	35.76	15.39	30.54	26.4	19.46	8.12
Merged-chr9-61025549-3	chr9	61025055	61026055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8486.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	23.45	18.43	12.95	20.24	12.13	12.86	9.51	10.17	6.25
Merged-chr1-87755932-3	chr1	87755432	87756432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	-79.0	NM_029846	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	291.75	278.77	194.24	209.84	299.96	228.28	190.11	226.39	169.25
Merged-chr6-47889032-3	chr6	47888531	47889531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146175, intron 2 of 7)	intron (NM_146175, intron 2 of 7)	11476.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	17.16	9.68	9.25	13.49	12.13	15.27	9.51	8.4	5.0
Merged-chr10-10469316-3	chr10	10468830	10469830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	2984.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	244.84	223.94	125.79	214.56	189.4	175.23	247.15	297.58	118.66
Merged-chr15-59004259-3	chr15	59003764	59004764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70454.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	48.05	32.25	12.02	58.03	48.98	51.44	46.47	49.08	22.48
Merged-chr14-118937810-3	chr14	118937311	118938311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008929)	promoter-TSS (NM_008929)	-121.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	334.08	289.83	242.34	250.32	281.77	188.89	231.3	221.97	148.01
Merged-chrX-48284791-3	chrX	48284313	48285313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045916, intron 1 of 3)	intron (NR_045916, intron 1 of 3)	613.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	19.45	33.64	27.75	35.09	19.59	48.23	41.19	46.43	29.35
Merged-chr9-70503817-3	chr9	70503319	70504319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033604)	promoter-TSS (NM_033604)	-44.0	NM_033604	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	265.43	163.12	209.04	238.85	136.22	172.01	278.83	151.22	96.8
Merged-chr3-10012502-3	chr3	10011999	10012999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272098)	promoter-TSS (NM_001272098)	-86.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	18.88	9.68	5.55	15.52	8.86	6.43	17.96	7.96	13.74
Merged-chr12-117728476-3	chr12	117727948	117728948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 20 of 27)	intron (NM_175930, intron 20 of 27)	-115413.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	54.92	58.98	22.2	37.78	35.45	23.31	68.65	48.2	18.74
Merged-chr8-46741172-3	chr8	46740648	46741648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	CpG	1403.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	287.17	273.71	231.24	248.97	181.94	232.29	270.38	219.31	211.71
Merged-chr4-141793614-3	chr4	141793113	141794113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015733)	promoter-TSS (NM_015733)	1.0	NM_001277932	12371.0	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	226.53	171.87	175.74	188.92	168.88	163.17	227.08	222.85	121.78
Merged-chr7-4739871-3	chr7	4739349	4740349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-278.0	NM_146177	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	92.67	59.44	64.75	102.56	31.26	57.07	82.38	58.37	44.97
Merged-chr7-132243069-3	chr7	132242563	132243563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 6 of 7)	intron (NM_029935, intron 6 of 7)	-72601.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	38.33	37.78	25.9	47.9	42.45	43.4	49.64	41.12	23.11
Merged-chr3-146812576-3	chr3	146812068	146813068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	CpG	378.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	101.25	56.22	37.0	113.35	66.71	73.14	98.23	58.37	32.48
Merged-chr16-38763693-3	chr16	38763216	38764216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019804, intron 5 of 6)	intron (NM_019804, intron 5 of 6)	21457.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	106.97	89.85	85.1	112.0	73.71	98.06	118.29	114.96	99.3
Merged-chr13-41359023-3	chr13	41358529	41359529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-28.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	103.54	71.88	46.25	75.57	61.11	62.7	59.15	58.37	18.74
Merged-chr10-127596906-3	chr10	127596408	127597408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	24240.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	567.48	383.37	299.68	576.21	352.68	303.83	430.92	464.72	242.94
Merged-chr19-4123228-3	chr19	4122729	4123729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016666, intron 1 of 6)	L1MB2|LINE|L1	-1654.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	229.97	230.39	87.87	142.37	94.23	101.28	178.5	219.31	90.56
Merged-chr15-37961118-3	chr15	37960626	37961626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199476)	promoter-TSS (NM_199476)	-71.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	133.29	149.75	132.27	145.06	133.89	111.73	154.2	142.38	99.92
Merged-chr13-94382213-3	chr13	94381696	94382696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23236.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	114.41	172.79	110.99	100.53	104.5	98.06	128.85	174.21	77.44
Merged-chr13-73490139-3	chr13	73489638	73490638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 3 of 13)	MTD|LTR|ERVL-MaLR	22755.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	41.19	31.33	31.45	45.88	41.99	29.74	60.2	43.33	14.99
Merged-chr1-93478414-3	chr1	93477918	93478918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159718)	promoter-TSS (NM_001159718)	-41.0	NM_001357556	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	337.51	251.13	180.37	307.67	202.46	251.59	238.7	243.19	149.89
Merged-chr15-58745654-3	chr15	58745147	58746147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77780.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	312.91	324.85	112.84	350.18	301.83	184.87	308.41	387.34	144.89
Merged-chr19-5661141-3	chr19	5660640	5661640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164568, intron 1 of 15)	intron (NM_001164568, intron 1 of 15)	2567.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	53.2	46.08	58.27	59.38	43.85	62.7	63.37	67.65	51.84
Merged-chr12-112941960-3	chr12	112941427	112942427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316724, intron 1 of 4)	CpG	215.0	NM_025399	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	136.15	153.44	118.39	109.3	114.76	110.12	117.24	95.95	63.7
Merged-chr2-156007997-3	chr2	156007470	156008470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145352)	promoter-TSS (NM_001145352)	7.0	NM_001145352	320095.0	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	28.6	25.34	35.15	40.48	29.39	38.58	30.63	30.95	17.49
Merged-chr10-60706453-3	chr10	60705955	60706955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9965.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	74.37	48.84	39.77	78.94	50.38	33.76	58.09	56.6	28.1
Merged-chr3-31094601-3	chr3	31094076	31095076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-482.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	249.42	134.55	151.69	209.16	91.44	136.64	274.61	142.38	108.04
Merged-chr3-51197290-3	chr3	51196780	51197780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27167.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	47.48	45.16	15.72	116.73	97.5	77.16	85.55	64.11	51.84
Merged-chr7-127288161-3	chr7	127287675	127288675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8085.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	54.35	58.98	64.75	45.88	34.52	42.6	59.15	61.46	39.35
Merged-chr8-80739655-3	chr8	80739150	80740150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053124)	promoter-TSS (NM_053124)	-191.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	369.55	382.91	295.06	305.65	313.03	273.29	317.91	330.74	213.59
Merged-chr19-18713098-3	chr19	18712605	18713605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177640)	promoter-TSS (NM_177640)	-131.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	61.78	72.34	75.85	69.5	59.71	92.44	90.83	61.46	53.08
Merged-chr1-40084587-3	chr1	40084073	40085073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360801)	promoter-TSS (NM_001360801)	-141.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	26.89	21.2	18.5	16.87	8.4	14.47	14.79	7.07	6.25
Merged-chr4-108460799-3	chr4	108460298	108461298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 2 of 30)	CpG	1372.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	263.72	290.75	221.06	215.23	249.12	175.23	284.11	355.5	165.5
Merged-chr9-113709108-3	chr9	113708586	113709586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164677)	promoter-TSS (NM_001164677)	-827.0	NM_011052	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	90.96	105.06	92.5	91.76	104.96	77.16	107.73	108.33	63.08
Merged-chr14-20703000-3	chr14	20702501	20703501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029446)	promoter-TSS (NR_029446)	-26.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	363.83	331.76	288.59	385.94	333.55	270.88	380.23	384.24	175.49
Merged-chr3-119783242-4	chr3	119782705	119783705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019550, exon 1 of 14)	exon (NM_019550, exon 1 of 14)	183.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	298.04	213.8	172.97	294.85	195.0	202.55	240.81	147.68	113.66
Merged-chr3-20028825-3	chr3	20028347	20029347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	6463.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	65.21	84.32	65.67	49.93	38.25	69.13	59.15	60.58	73.69
Merged-chr1-13980465-3	chr1	13979961	13980961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-193532.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	16.59	17.05	16.65	6.75	13.53	12.86	9.51	7.07	17.49
Merged-chr12-8499352-4	chr12	8498834	8499834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007483, exon 1 of 1)	exon (NM_007483, exon 1 of 1)	675.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	228.82	202.75	198.87	230.08	227.66	190.5	247.15	209.15	139.89
Merged-chr9-108649396-3	chr9	108648890	108649890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	18.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	477.09	360.79	357.03	369.75	316.76	364.92	374.95	336.05	254.81
Merged-chr7-16272937-3	chr7	16272453	16273453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001136270, exon 1 of 1)	exon (NM_001136270, exon 1 of 1)	739.0	NM_001136270	66300.0	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	37.76	14.28	21.27	31.04	22.39	32.96	50.7	20.34	24.98
Merged-chr15-86201199-3	chr15	86200695	86201695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13264.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	283.74	175.1	145.22	290.13	190.8	157.54	209.12	176.87	121.16
Merged-chrX-18162485-3	chrX	18161994	18162994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009483)	promoter-TSS (NM_009483)	-81.0	NM_009483	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	215.66	193.07	205.34	209.16	193.13	147.9	182.72	182.17	119.28
Merged-chr11-71285379-2	chr11	71284870	71285870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027858)	promoter-TSS (NR_027858)	-138.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	67.5	99.07	69.37	0.0	0.47	0.0	73.93	70.3	51.84
Merged-chr4-136893021-3	chr4	136892518	136893518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007574)	promoter-TSS (NM_007574)	-104.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	121.28	101.37	74.0	89.06	65.78	111.73	121.46	112.75	79.94
Merged-chr14-32513505-3	chr14	32513003	32514003	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081221)	promoter-TSS (NM_001081221)	-18.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	71.51	61.28	34.22	77.59	81.64	45.82	60.2	55.71	24.36
Merged-chr11-109361589-3	chr11	109361058	109362058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038097, intron 1 of 1)	intron (NR_038097, intron 1 of 1)	-1236.0	NM_010303	14674.0	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	263.72	228.09	113.77	176.1	116.16	69.13	217.57	228.16	79.94
Merged-chr13-112137757-3	chr13	112137245	112138245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-150706.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	35.47	33.64	28.67	51.28	26.12	28.94	55.98	75.61	29.35
Merged-chr10-67043408-3	chr10	67042906	67043906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	38331.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	33.75	33.64	27.75	44.53	37.32	37.78	48.58	34.05	16.86
Merged-chr19-34602100-3	chr19	34601599	34602599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101605)	promoter-TSS (NM_001101605)	-131.0	NM_001101605	667373.0	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	40.04	40.55	28.67	27.66	31.26	25.72	74.99	109.66	66.82
Merged-chr11-26586754-3	chr11	26586242	26587242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	7178.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	139.01	165.42	120.24	114.03	110.1	122.98	154.2	150.34	85.56
Merged-chr13-14063562-3	chr13	14063073	14064073	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331176)	promoter-TSS (NM_001331176)	-85.0	NM_010282	14593.0	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	204.8	187.08	187.77	150.46	131.09	125.39	188.0	198.53	113.04
Merged-chr4-105703607-3	chr4	105703119	105704119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-537594.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	189.92	197.22	114.69	181.5	173.07	143.07	194.34	219.31	108.04
Merged-chr2-168080809-3	chr2	168080294	168081294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021409)	promoter-TSS (NM_021409)	-210.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	10.3	3.23	1.85	4.72	0.93	1.61	7.39	1.33	2.5
Merged-chr17-87985032-3	chr17	87984535	87985535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010830, exon 4 of 10)	exon (NM_010830, exon 4 of 10)	9985.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	94.96	96.76	51.8	101.88	92.37	97.26	114.07	103.91	88.06
Merged-chr9-21927469-3	chr9	21926972	21927972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253870)	promoter-TSS (NM_001253870)	1.0	NM_025977	67119.0	Mm.154305	NM_025977	ENSMUSG00000006241	Ccdc159	2510048L02Rik	coiled-coil domain containing 159	protein-coding	99.54	97.69	73.07	140.34	137.62	122.18	102.45	139.28	48.09
Merged-chr14-120278448-3	chr14	120277950	120278950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2781.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	226.53	180.17	65.67	275.28	220.66	73.14	189.06	175.1	84.94
Merged-chr7-102513207-3	chr7	102512699	102513699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18426.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	8.58	6.45	0.0	8.1	0.93	8.04	7.39	3.54	1.87
Merged-chr17-46160294-3	chr17	46159806	46160806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019581)	promoter-TSS (NM_019581)	-726.0	NM_019581	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	239.69	225.32	152.62	157.88	165.61	179.24	216.52	290.5	166.75
Merged-chr2-166467321-3	chr2	166466818	166467818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19867.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	132.72	72.8	60.12	116.73	48.98	49.83	88.72	51.29	22.48
Merged-chr9-122805588-3	chr9	122805119	122806119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013405)	promoter-TSS (NM_001013405)	72.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	133.29	170.49	183.14	146.41	194.53	174.42	195.39	156.97	144.27
Merged-chr2-174440038-3	chr2	174439510	174440510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022325)	promoter-TSS (NM_022325)	-971.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	233.97	156.21	115.62	178.13	115.69	122.18	122.52	112.31	62.45
Merged-chr3-32389229-1	chr3	32388729	32389729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-23564.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	18.88	14.75	5.55	2.7	1.4	10.45	2.11	0.88	1.87
Merged-chr8-122432984-3	chr8	122432450	122433450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007806)	promoter-TSS (NM_007806)	-10.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	360.39	272.78	197.94	352.88	226.72	218.63	296.79	281.22	153.01
Merged-chr1-13652270-3	chr1	13651802	13652802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145381, intron 1 of 6)	intron (NM_145381, intron 1 of 6)	8207.0	NM_145381	212442.0	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	78.37	94.0	80.47	51.95	49.92	55.46	53.87	45.99	22.48
Merged-chr9-37247602-3	chr9	37247110	37248110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8128.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	131.0	153.44	87.87	159.23	130.62	130.21	130.97	161.83	65.58
Merged-chr14-27379537-3	chr14	27379039	27380039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	18150.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	195.07	192.61	150.77	221.98	162.34	192.11	222.86	213.12	99.3
Merged-chr12-105033411-3	chr12	105032909	105033909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028419, intron 1 of 1)	intron (NM_028419, intron 1 of 1)	791.0	NM_028419	73046.0	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	98.39	72.8	64.75	89.06	76.97	65.11	73.93	50.41	45.59
Merged-chr11-60454619-3	chr11	60454162	60455162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021354)	promoter-TSS (NM_021354)	71.0	NM_021354	13495.0	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605|DRG-2	developmentally regulated GTP binding protein 2	protein-coding	60.07	93.08	51.8	63.42	63.45	85.2	87.66	84.01	61.2
Merged-chr7-141168826-3	chr7	141168327	141169327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172101)	promoter-TSS (NM_001172101)	109.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	117.84	97.23	82.32	135.62	138.55	134.23	138.36	152.99	79.94
Merged-chr13-49421173-3	chr13	49420693	49421693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199056)	promoter-TSS (NM_199056)	-30.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	75.51	69.12	64.75	72.19	57.85	97.26	65.48	49.52	41.22
Merged-chr7-27542843-3	chr7	27542347	27543347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011116, exon 3 of 14)	5' UTR (NM_011116, exon 3 of 14)	10371.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	53.77	58.52	40.7	94.46	83.97	87.61	109.84	103.47	44.34
Merged-chr5-112251493-3	chr5	112251021	112252021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312884, intron 1 of 4)	intron (NM_001312884, intron 1 of 4)	997.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	126.42	113.35	94.35	76.24	83.51	122.18	121.46	145.03	97.43
Merged-chr1-63119906-3	chr1	63119412	63120412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	intron (NR_045914, intron 1 of 3)	5172.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	96.68	104.6	67.52	86.36	61.58	49.03	69.71	79.59	34.35
Merged-chr5-114942230-3	chr5	114941742	114942742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028211)	promoter-TSS (NM_028211)	40.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	37.76	42.39	40.7	52.63	44.78	41.8	63.37	62.79	28.73
Merged-chr5-20681288-3	chr5	20680762	20681762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	200862.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	10.3	7.37	9.25	10.8	4.67	13.66	6.34	5.31	6.87
Merged-chr13-62684831-3	chr13	62684341	62685341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60659.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	25.74	17.97	23.12	29.69	25.19	64.3	36.97	31.84	22.48
Merged-chr4-141138625-3	chr4	141138116	141139116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1180.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	236.26	243.29	161.87	155.19	167.94	174.42	221.8	254.25	169.87
Merged-chr14-67008817-4	chr14	67008279	67009279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009761)	promoter-TSS (NM_009761)	98.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	181.34	177.4	146.14	170.7	146.02	189.69	208.07	150.78	104.92
Merged-chr15-38078237-3	chr15	38077723	38078723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	CpG	631.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	154.45	136.39	174.82	165.31	117.56	147.09	157.37	112.75	118.66
Merged-chr11-54068483-3	chr11	54067974	54068974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	543.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	240.83	228.09	168.34	177.45	130.62	207.38	217.57	230.37	135.52
Merged-chr4-125127486-3	chr4	125126987	125127987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 1 of 5)	CpG	394.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	466.8	399.04	307.08	385.94	398.86	310.26	419.31	424.04	239.82
Merged-chr2-166905980-3	chr2	166905507	166906507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023565)	promoter-TSS (NM_023565)	-89.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	411.31	334.99	228.46	429.12	328.89	279.72	273.55	321.46	174.24
Merged-chr2-32570854-3	chr2	32570360	32571360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010073)	promoter-TSS (NM_010073)	2.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	118.42	111.97	61.05	134.94	123.62	93.24	146.81	129.55	79.94
Merged-chr18-46477005-3	chr18	46476492	46477492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11176.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	127.0	101.37	68.45	134.27	138.09	116.55	99.28	111.43	49.34
Merged-chr1-171232031-3	chr1	171231536	171232536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 1 of 4)	intron (NM_010185, intron 1 of 4)	2313.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	90.38	109.21	65.67	132.92	110.1	95.65	141.53	196.76	51.21
Merged-chr17-83646591-2	chr17	83646110	83647110	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14715.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	29.75	16.13	12.02	20.92	20.53	26.53	15.84	19.01	20.61
Merged-chr2-3419096-3	chr2	3418572	3419572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355210)	promoter-TSS (NM_001355210)	57.0	NM_001355207	104362.0	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	124.71	115.2	35.15	97.83	73.24	28.94	54.92	64.56	28.73
Merged-chr17-28177299-3	chr17	28176788	28177788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172617)	promoter-TSS (NM_172617)	92.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	159.03	141.0	101.74	130.22	122.23	94.85	119.35	72.52	78.07
Merged-chr12-4917311-3	chr12	4916817	4917817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099628)	promoter-TSS (NM_001099628)	-36.0	NM_001099628	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	225.39	235.92	193.32	180.82	179.61	171.21	201.73	122.92	111.79
Merged-chr4-95050096-3	chr4	95049602	95050602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2120.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	139.01	117.04	45.32	107.28	87.7	73.95	69.71	76.05	37.47
Merged-chr7-24374092-3	chr7	24373585	24374585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163510, intron 1 of 8)	intron (NM_001163510, intron 1 of 8)	3822.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	22.88	7.37	16.65	14.17	10.26	12.86	42.25	23.43	20.61
Merged-chr4-135433885-3	chr4	135433397	135434397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022980)	promoter-TSS (NM_022980)	-92.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	143.59	98.61	62.9	148.44	107.3	109.32	152.09	144.59	58.08
Merged-chr9-25482049-1	chr9	25481549	25482549	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 1 of 7)	intron (NM_026189, intron 1 of 7)	452.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	147.02	146.99	99.89	212.54	181.01	131.82	196.45	179.08	99.3
Merged-chr18-10726337-4	chr18	10725816	10726816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144860, exon 1 of 21)	exon (NM_144860, exon 1 of 21)	691.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	196.21	165.42	217.36	212.54	183.34	236.31	251.37	131.32	163.0
Merged-chr14-46915713-3	chr14	46915223	46916223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	32758.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	80.09	89.39	66.6	120.77	132.49	102.08	82.38	91.09	76.82
Merged-chr10-26799047-3	chr10	26798553	26799553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	26541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	327.21	293.98	186.84	345.46	235.59	223.45	251.37	210.03	133.65
Merged-chr19-5510621-3	chr19	5510132	5511132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-115.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	126.42	119.34	105.44	120.1	97.97	70.73	121.46	148.57	68.07
Merged-chr7-110164287-3	chr7	110163792	110164792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42233.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	239.12	216.57	107.29	269.21	297.17	158.35	223.91	324.11	113.66
Merged-chr4-43381993-3	chr4	43381489	43382489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037709)	promoter-TSS (NM_001037709)	7.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	231.11	136.39	137.82	249.65	190.34	167.19	158.43	176.42	80.56
Merged-chr16-55934767-3	chr16	55934237	55935237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159366, intron 1 of 4)	intron (NM_001159366, intron 1 of 4)	111.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	45.76	51.15	35.15	59.38	47.58	28.94	59.15	49.52	27.48
Merged-chr5-137828883-3	chr5	137828395	137829395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	7383.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	103.54	99.99	74.92	99.86	73.24	129.41	103.51	96.39	67.45
Merged-chr5-64701978-3	chr5	64701499	64702499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-91300.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	60.07	58.98	52.72	45.88	51.32	109.32	119.35	155.64	101.17
Merged-chr5-30155140-3	chr5	30154637	30155637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178878)	promoter-TSS (NM_178878)	-116.0	NM_145558	231086.0	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	185.35	181.09	102.67	207.81	152.08	167.19	198.56	173.77	129.28
Merged-chr12-91183670-3	chr12	91183163	91184163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	73434.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	62.93	64.97	56.42	63.42	49.92	53.85	51.75	45.54	39.97
Merged-chr17-17867241-3	chr17	17866721	17867721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12033.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	251.13	267.72	104.52	221.31	156.75	156.74	209.12	228.16	119.91
Merged-chr3-127789916-3	chr3	127789425	127790425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145133)	promoter-TSS (NM_145133)	53.0	NM_145133	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	364.4	245.6	225.69	287.43	189.4	222.65	265.1	263.53	188.61
Merged-chr13-75823385-3	chr13	75822889	75823889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16496.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	34.9	49.76	49.02	43.86	34.99	51.44	26.4	28.74	29.35
Merged-chr9-57874334-3	chr9	57873836	57874836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36650.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	42.33	35.94	14.8	58.7	29.39	21.7	80.27	74.73	23.11
Merged-chr17-56990298-3	chr17	56989801	56990801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017393)	promoter-TSS (NM_017393)	37.0	NM_017393	53895.0	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	79.52	69.12	96.2	72.87	71.38	106.9	105.62	76.49	41.22
Merged-chr7-44374456-3	chr7	44373950	44374950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027049, exon 2 of 6)	5' UTR (NM_027049, exon 2 of 6)	580.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	59.49	43.31	55.5	52.63	43.85	40.19	65.48	34.49	38.1
Merged-chr10-30200564-3	chr10	30200079	30201079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109747)	promoter-TSS (NM_001109747)	-39.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	28.6	15.67	17.57	12.14	18.66	6.43	27.46	14.59	11.24
Merged-chr6-54718976-3	chr6	54718461	54719461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37337.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	17.73	11.06	9.25	7.42	14.93	8.84	8.45	6.63	5.0
Merged-chr5-28071201-3	chr5	28070718	28071718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	-194.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	302.04	302.27	246.04	361.65	404.0	306.24	368.61	366.11	179.24
Merged-chr2-93822518-3	chr2	93822007	93823007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010163)	promoter-TSS (NM_010163)	61.0	NM_010163	14043.0	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	25.17	11.06	20.35	16.87	19.13	19.29	22.18	10.61	11.24
Merged-chr7-104400853-3	chr7	104400316	104401316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42170.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	131.0	164.5	98.97	123.47	110.1	110.92	170.05	191.46	118.04
Merged-chr2-58183847-3	chr2	58183348	58184348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19874.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	14.87	11.06	8.32	16.87	19.59	36.97	12.67	9.29	14.36
Merged-chr2-145806506-3	chr2	145805994	145806994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	20378.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	87.52	67.74	64.75	105.93	71.84	111.73	52.81	55.71	52.46
Merged-chr19-8713023-3	chr19	8712540	8713540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 2 of 9)	intron (NM_001161413, intron 2 of 9)	857.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	319.78	314.72	203.49	248.3	278.97	196.93	246.09	336.93	141.77
Merged-chr19-10191475-3	chr19	10190927	10191927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105959)	promoter-TSS (NR_105959)	52.0	NR_105959	102465600.0		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	83.52	67.27	58.27	85.69	65.78	78.77	61.26	65.0	48.09
Merged-chr12-55447267-3	chr12	55446730	55447730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45417.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	20.59	21.66	15.72	41.83	27.99	22.51	36.97	26.09	13.74
Merged-chrUn_JH584304-32865-1	chrUn_JH584304	32365	33365	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	26824.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	48.58	33.16	0.0
Merged-chr15-101284095-3	chr15	101283599	101284599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-202.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	196.21	229.01	137.82	226.71	167.94	159.95	256.65	221.53	106.17
Merged-chr16-10545336-3	chr16	10544852	10545852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204229)	promoter-TSS (NM_001204229)	13.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	44.05	40.55	31.45	49.93	32.66	56.27	68.65	53.94	23.11
Merged-chr14-61309774-3	chr14	61309284	61310284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177337)	promoter-TSS (NM_177337)	31.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	85.81	73.73	74.92	80.97	71.38	106.1	61.26	54.83	50.59
Merged-chr5-24423689-3	chr5	24423167	24424167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-137.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	145.3	133.63	113.77	106.61	136.22	114.14	133.08	168.91	84.31
Merged-chr6-30401678-4	chr6	30401162	30402162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311087)	promoter-TSS (NM_001311087)	-193.0	NM_029742	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	102.97	83.4	70.3	101.88	71.38	96.45	88.72	91.53	72.45
Merged-chr2-154737171-1	chr2	154736671	154737671	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-53939.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	2.86	1.38	0.0	14.84	4.67	1.61	2.11	3.54	3.12
Merged-chr2-71037674-3	chr2	71037169	71038169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	MLT1L|LTR|ERVL-MaLR	17937.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	47.48	49.76	65.67	60.05	68.58	82.79	83.44	88.43	51.84
Merged-chr2-80638857-3	chr2	80638350	80639350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027091)	promoter-TSS (NM_027091)	38.0	NM_027091	69482.0	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	17.73	19.81	7.4	20.24	14.0	9.65	20.07	16.8	13.12
Merged-chr4-133463316-2	chr4	133462797	133463797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16836.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	71.51	64.05	44.4	101.88	47.58	93.24	15.84	12.38	11.24
Merged-chr13-38659108-3	chr13	38658608	38659608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025380)	promoter-TSS (NM_025380)	-80.0	NM_025380	66143.0	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	50.91	35.02	47.17	49.25	37.79	49.03	52.81	31.39	15.61
Merged-chr4-141606090-3	chr4	141605584	141606584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133754)	promoter-TSS (NM_133754)	-32.0	NM_133754	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	442.2	358.03	219.21	82.32	61.58	28.94	326.36	403.26	169.25
Merged-chr5-122343943-3	chr5	122343468	122344468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	10227.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	35.47	39.17	22.2	40.48	43.85	32.15	33.8	41.56	19.36
Merged-chr10-57486290-3	chr10	57485796	57486796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045353)	promoter-TSS (NR_045353)	57.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	90.38	68.2	58.27	99.18	78.37	103.69	90.83	80.03	39.97
Merged-chr1-74373507-3	chr1	74373014	74374014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-1689.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	41.19	53.45	31.45	53.98	33.12	41.8	60.2	31.39	30.6
Merged-chr9-64452926-3	chr9	64452420	64453420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	67294.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	11.44	13.36	3.7	28.34	16.33	6.43	15.84	22.55	3.75
Merged-chr18-34850293-3	chr18	34849807	34850807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9718.0	NM_144865	225362.0	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	4.58	10.14	5.55	8.77	1.87	6.43	5.28	3.54	0.0
Merged-chr15-3234291-3	chr15	3233735	3234735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-36532.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	27.46	16.13	29.6	29.01	16.79	22.51	15.84	7.52	19.36
Merged-chr18-40440709-1	chr18	40440209	40441209	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	MTD|LTR|ERVL-MaLR	182348.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.0	3.69	3.7	5.4	5.13	1.61	8.45	7.52	1.25
Merged-chr7-75587727-1	chr7	75587227	75588227	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	132193.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	4.58	8.75	3.7	6.75	8.86	4.82	1.06	1.77	5.0
Merged-chr9-70261893-1	chr9	70261393	70262393	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	54543.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	22.88	32.25	16.65	26.99	27.99	30.54	16.9	3.1	9.99
Merged-chr16-15888005-1	chr16	15887505	15888505	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007679, exon 1 of 1)	exon (NM_007679, exon 1 of 1)	719.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	137.86	171.87	151.69	113.35	125.96	119.76	136.25	112.31	147.39
Merged-chr4-130789932-3	chr4	130789425	130790425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2612.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	107.55	73.26	90.65	132.24	71.84	147.09	117.24	115.41	68.7
Merged-chr11-75659503-3	chr11	75659002	75660002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 5 of 31)	L2a|LINE|L2	3487.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	42.33	42.39	47.17	51.28	31.26	41.8	52.81	51.73	44.34
Merged-chr10-125271706-3	chr10	125271232	125272232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	37084.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	54.35	72.34	43.47	45.88	51.78	81.18	58.09	45.99	28.73
Merged-chr3-97158776-3	chr3	97158274	97159274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-3.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	73.79	100.45	86.02	80.97	96.1	97.26	106.67	115.41	65.58
Merged-chr19-17314702-3	chr19	17314178	17315178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24827.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	18.88	21.2	7.4	14.84	9.33	22.51	19.01	11.94	13.74
Merged-chr19-4928327-3	chr19	4927838	4928838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133803)	promoter-TSS (NM_133803)	-51.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	38.33	26.73	41.62	37.11	32.19	52.25	51.75	49.08	23.11
Merged-chr6-97179156-3	chr6	97178669	97179669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-45.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	248.84	210.12	194.24	229.4	258.91	221.04	235.53	211.36	109.92
Merged-chr6-113645021-3	chr6	113644527	113645527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	6560.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	272.87	255.27	167.42	256.39	226.72	183.26	217.57	221.53	139.27
Merged-chr8-56551533-3	chr8	56551034	56552034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009951)	promoter-TSS (NM_001009951)	400.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	168.18	146.53	100.82	194.32	181.01	144.68	275.66	267.95	114.29
Merged-chr7-121034977-1	chr7	121034477	121035477	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	CpG	532.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	103.54	96.76	136.89	140.34	99.37	132.63	155.26	88.43	71.2
Merged-chr9-78481034-3	chr9	78480532	78481532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010106, intron 1 of 7)	CpG	692.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	359.82	444.2	296.91	348.15	462.78	329.55	292.56	340.91	227.33
Merged-chr7-140856381-3	chr7	140855902	140856902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018742)	promoter-TSS (NM_018742)	-19.0	NM_018742	54399.0	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	185.35	221.18	196.09	193.64	203.86	217.02	224.97	233.91	158.63
Merged-chr12-85347680-3	chr12	85347211	85348211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-8349.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	211.09	262.19	232.16	248.97	213.19	225.06	253.48	297.14	150.51
Merged-chr11-120796445-3	chr11	120795949	120796949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026824)	promoter-TSS (NM_026824)	-54.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	82.38	64.51	59.2	82.99	59.71	67.52	73.93	69.42	35.6
Merged-chr4-56757917-1	chr4	56757417	56758417	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026079, intron 34 of 36)	URR1B|DNA|hAT-Charlie	14495.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	1.14	4.61	0.0	4.72	4.67	1.61	43.3	38.03	21.86
Merged-chr4-126260157-3	chr4	126259667	126260667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2238.0	NM_013718	27096.0	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	160.75	157.13	127.64	149.79	110.56	125.39	133.08	180.85	118.04
Merged-chr17-83727857-3	chr17	83727358	83728358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	intron (NM_054082, intron 3 of 16)	21695.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	56.63	47.92	46.25	62.75	43.85	38.58	49.64	55.71	36.85
Merged-chr17-44052977-1	chr17	44052477	44053477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	35.47	18.43	7.4	7.42	7.46	1.61	8.45	3.98	5.0
Merged-chr14-103890984-3	chr14	103890486	103891486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-46510.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.58	10.14	12.95	26.31	17.26	11.25	10.56	12.82	5.62
Merged-chr3-53863907-5	chr3	53863411	53864411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026435)	promoter-TSS (NM_026435)	-104.0	NM_026435	67890.0	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|Gm10726	ubiquitin-fold modifier 1	protein-coding	175.05	169.57	88.8	173.4	139.95	102.88	189.06	154.32	53.08
Merged-chr13-37658217-3	chr13	37657714	37658714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-167824.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	86.38	83.4	40.7	91.09	63.91	63.5	66.54	63.23	60.58
Merged-chr17-22314963-3	chr17	22314432	22315432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357991)	promoter-TSS (NM_001357991)	-90.0	NM_001357991	631624.0	Mm.440794	NM_001357991		Gm7072	EG631624	predicted gene 7072	protein-coding	37.76	36.4	9.25	37.78	31.72	9.65	162.65	225.95	93.68
Merged-chr1-162005446-4	chr1	162004960	162005960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040562, exon 2 of 3)	non-coding (NR_040562, exon 2 of 3)	491.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	153.88	171.41	103.59	122.12	118.03	106.1	180.61	180.85	119.28
Merged-chr2-72262997-3	chr2	72262477	72263477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-22660.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	27.46	9.22	3.7	12.82	8.86	10.45	24.29	14.15	6.87
Merged-chr18-36348434-5	chr18	36347917	36348917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081365)	promoter-TSS (NM_001081365)	-207.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	162.46	135.01	64.75	194.99	175.41	110.12	134.14	87.99	34.35
Merged-chr14-43925241-3	chr14	43924741	43925741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1873.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	72.08	117.5	49.02	56.68	59.71	43.4	90.83	116.73	46.22
Merged-chr10-62491638-3	chr10	62491135	62492135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4830.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	100.68	94.46	70.3	145.06	108.7	108.51	98.23	127.79	84.94
Merged-chr10-44529530-3	chr10	44529031	44530031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-70783.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	81.23	92.62	90.65	90.41	75.57	79.58	74.99	111.43	61.83
Merged-chr15-12824744-3	chr15	12824248	12825248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029998)	promoter-TSS (NM_029998)	-67.0	NM_026799	14000.0	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	72.08	78.79	83.25	91.09	91.9	73.95	69.71	91.97	60.58
Merged-chr5-24447777-3	chr5	24447277	24448277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022418)	promoter-TSS (NM_022418)	69.0	NM_022418	64295.0	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	32.61	34.1	28.67	48.58	43.85	45.01	39.08	37.58	18.74
Merged-chr14-46822245-3	chr14	46821761	46822761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-19.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	259.14	268.64	180.37	270.56	270.11	245.96	286.23	310.4	141.14
Merged-chr11-48872424-3	chr11	48871928	48872928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1008.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	257.42	291.22	165.57	197.69	221.59	155.13	200.68	267.51	118.66
Merged-chr13-49186938-1	chr13	49186438	49187438	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013610)	promoter-TSS (NM_013610)	-609.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	116.7	97.23	98.05	141.69	107.3	131.02	111.96	101.26	64.95
Merged-chr17-79896121-3	chr17	79895602	79896602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286647)	promoter-TSS (NM_001286647)	21.0	NM_178050	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	200.79	142.84	120.24	217.26	110.1	98.87	179.55	94.18	87.43
Merged-chr11-3144075-3	chr11	3143577	3144577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 18 of 32)	intron (NM_030207, intron 18 of 32)	20056.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	45.19	52.07	90.65	58.03	61.11	97.26	0.0	0.0	111.79
Merged-chr1-74381638-3	chr1	74381122	74382122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 8 of 14)	intron (NM_013612, intron 8 of 14)	6419.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	76.66	77.87	70.3	55.33	56.45	72.34	74.99	72.07	54.33
Merged-chr4-57956456-3	chr4	57955951	57956951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011660)	promoter-TSS (NM_011660)	-40.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	279.16	273.71	158.17	244.92	232.79	187.28	224.97	245.4	148.64
Merged-chr2-180589416-3	chr2	180589005	180590005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031373)	promoter-TSS (NM_031373)	98.0	NM_031373	72075.0	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	220.24	178.32	142.44	154.51	172.14	142.27	229.19	171.56	119.28
Merged-chr9-57589490-3	chr9	57588995	57589995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027895)	promoter-TSS (NM_027895)	43.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	116.13	92.62	73.07	111.33	75.11	91.63	111.96	91.53	36.85
Merged-chr10-14132424-3	chr10	14131920	14132920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	166041.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	77.8	53.45	69.37	68.82	42.45	54.66	51.75	52.62	26.85
Merged-chr3-104788820-3	chr3	104788355	104789355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291859)	promoter-TSS (NM_001291859)	-179.0	NM_007484	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	65.79	52.07	52.72	130.9	63.91	74.75	87.66	65.44	25.61
Merged-chr4-155150712-3	chr4	155150190	155151190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	64086.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	22.88	8.29	16.65	14.17	11.66	1.61	15.84	9.73	5.0
Merged-chr18-23868508-3	chr18	23867992	23868992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	64522.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	118.42	126.72	76.77	275.96	250.05	225.86	209.12	250.71	112.42
Merged-chr1-172207396-3	chr1	172206896	172207896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329869)	promoter-TSS (NM_001329869)	-592.0	NM_011063	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	196.79	158.51	107.29	183.52	127.36	122.18	142.59	159.62	81.19
Merged-chr9-66918813-3	chr9	66918326	66919326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	879.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	169.9	182.93	123.94	167.33	130.62	165.58	147.87	178.64	123.66
Merged-chr16-57501008-3	chr16	57500512	57501512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-48230.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	160.75	156.21	54.57	190.95	124.56	89.22	118.29	124.25	84.94
Merged-chr15-44427995-3	chr15	44427494	44428494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175009)	promoter-TSS (NM_175009)	-117.0	NM_175009	223527.0	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	ENY2 transcription and export complex 2 subunit	protein-coding	197.36	194.91	128.57	213.21	155.35	158.35	197.51	190.13	113.04
Merged-chr7-67445544-3	chr7	67445026	67446026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72668.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	137.29	157.59	123.02	134.27	103.1	155.93	141.53	174.21	112.42
Merged-chr13-43171502-3	chr13	43171020	43172020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025935)	promoter-TSS (NM_025935)	-19.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	75.51	76.49	70.3	76.24	95.17	89.22	76.05	61.9	45.59
Merged-chr3-146813069-3	chr3	146812554	146813554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011100)	promoter-TSS (NM_011100)	-108.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	231.68	215.19	146.14	251.67	227.19	192.91	256.65	212.24	123.66
Merged-chr2-157840767-3	chr2	157840251	157841251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73902.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	28.03	38.71	25.9	22.94	21.46	25.72	27.46	30.51	26.23
Merged-chr1-128642452-3	chr1	128641963	128642963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50164.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	13.73	5.99	3.7	12.82	6.53	15.27	8.45	4.86	7.49
Merged-chr7-116504275-3	chr7	116503773	116504773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	-96.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	82.95	99.53	65.67	107.95	86.3	94.85	69.71	59.69	43.72
Merged-chr15-78571647-3	chr15	78571117	78572117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009008, intron 1 of 6)	intron (NM_009008, intron 1 of 6)	1166.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	102.97	105.06	93.42	129.55	89.57	83.59	163.71	142.82	68.7
Merged-chr15-36283228-3	chr15	36282703	36283703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013923)	promoter-TSS (NM_013923)	-56.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	102.97	79.72	137.82	107.95	106.36	125.39	87.66	76.49	74.94
Merged-chr2-73541042-3	chr2	73540533	73541533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11546.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	90.96	99.07	53.65	112.68	99.37	77.16	108.79	132.65	47.46
Merged-chr8-84192790-3	chr8	84192274	84193274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13813.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	308.91	276.01	110.99	354.9	267.31	156.74	246.09	263.97	136.15
Merged-chr9-40582000-3	chr9	40581516	40582516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50633.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	90.38	88.47	87.87	76.92	62.51	91.63	73.93	86.66	85.56
Merged-chrX-155172543-3	chrX	155172038	155173038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24689.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	41.19	32.72	25.9	31.71	35.45	30.54	55.98	49.52	27.48
Merged-chr12-83987903-3	chr12	83987420	83988420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134188)	promoter-TSS (NM_134188)	59.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	395.29	389.36	278.41	461.51	531.35	286.15	344.32	327.2	153.63
Merged-chr4-116655291-3	chr4	116654795	116655795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3621.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	274.59	236.84	146.14	232.78	194.53	153.52	207.01	280.78	79.94
Merged-chr19-21126848-3	chr19	21126346	21127346	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22136.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	149.88	173.72	86.95	163.28	165.61	137.45	136.25	218.43	131.78
Merged-chr12-55492713-3	chr12	55492206	55493206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010907)	promoter-TSS (NM_010907)	-59.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	326.64	265.41	225.69	306.32	211.79	234.71	323.19	360.81	181.11
Merged-chr18-37999579-3	chr18	37999080	38000080	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205336)	promoter-TSS (NM_001205336)	-611.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	45.76	39.63	31.45	29.69	36.85	41.8	43.3	26.09	28.1
Merged-chr13-110711083-3	chr13	110710581	110711581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-192418.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	13.16	16.59	3.7	16.19	21.46	24.92	8.45	14.59	13.74
Merged-chr16-25958874-3	chr16	25958372	25959372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146912.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	22.31	14.75	28.67	20.24	12.13	18.49	10.56	8.84	4.37
Merged-chr10-117845324-3	chr10	117844813	117845813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	661.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	307.76	201.36	274.71	317.79	210.4	175.23	255.6	196.32	132.4
Merged-chr18-46406089-3	chr18	46405569	46406569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59747.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	183.63	196.29	172.97	184.2	175.41	160.76	208.07	253.8	109.29
Merged-chr7-19803904-3	chr7	19803399	19804399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7090.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	25.17	24.88	27.75	29.69	17.73	32.15	58.09	30.51	13.74
Merged-chr11-79254180-2	chr11	79253658	79254658	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	CpG	537.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	473.66	440.51	302.46	433.17	327.49	294.19	337.98	443.05	231.7
Merged-chr9-21718968-3	chr9	21718467	21719467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4609.0	NM_001252658	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	55.49	44.24	32.37	78.27	44.78	74.75	68.65	80.03	51.21
Merged-chr17-25727594-3	chr17	25727106	25728106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145409)	promoter-TSS (NM_145409)	-111.0	NM_028009	106707.0	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	26.31	27.19	24.97	27.66	20.06	18.49	23.24	21.22	13.12
Merged-chr7-80369247-3	chr7	80368750	80369750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172903, intron 3 of 23)	(TCC)n|Simple_repeat|Simple_repeat	2125.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	49.77	48.84	37.0	79.62	56.91	61.09	66.54	56.6	36.85
Merged-chr1-131527621-3	chr1	131527106	131528106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175382)	promoter-TSS (NM_175382)	-245.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	85.24	79.25	85.1	88.39	53.65	81.99	78.16	72.52	56.83
Merged-chr12-11265989-3	chr12	11265493	11266493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177331)	promoter-TSS (NM_177331)	107.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	133.29	102.75	104.52	128.87	93.77	142.27	146.81	119.83	95.55
Merged-chr1-134698649-1	chr1	134698149	134699149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10651.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	22.31	13.82	7.4	6.75	1.4	1.61	5.28	0.44	0.62
Merged-chr13-5888360-3	chr13	5887851	5888851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26862.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	136.15	128.56	90.65	111.33	94.7	74.75	119.35	116.73	68.7
Merged-chr16-32190373-3	chr16	32189887	32190887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	10587.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	159.03	135.47	160.94	141.69	84.9	168.8	138.36	154.32	133.02
Merged-chr13-107945025-3	chr13	107944525	107945525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-54961.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.31	17.97	17.57	30.36	24.26	36.17	28.52	38.47	32.48
Merged-chr13-22035769-3	chr13	22035319	22036319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	-2.0	NM_175665	319184.0	Mm.358955	NM_175665	ENSMUSG00000062727	Hist1h2bk	-	histone cluster 1, H2bk	protein-coding	22.88	35.48	29.6	37.11	33.12	44.21	46.47	45.54	36.85
Merged-chr11-117088637-3	chr11	117088124	117089124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	11276.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	229.97	165.88	128.57	228.05	122.69	147.9	235.53	263.09	93.68
Merged-chr6-116264215-3	chr6	116263717	116264717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309446)	promoter-TSS (NM_001309446)	-2.0	NM_001309446	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	80.66	53.45	54.57	76.24	44.32	41.8	81.33	68.09	31.85
Merged-chr10-80016623-3	chr10	80016140	80017140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142701)	promoter-TSS (NM_001142701)	-32.0	NM_001142701	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	46.91	39.63	66.6	60.05	55.05	48.23	67.6	55.71	29.98
Merged-chr15-68011381-3	chr15	68010897	68011897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	247459.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.58	13.82	5.55	24.29	26.12	16.88	14.79	13.27	22.48
Merged-chr14-14905078-3	chr14	14904564	14905564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 22 of 34)	intron (NM_001195229, intron 22 of 34)	84249.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	10.3	10.6	5.55	14.84	12.13	11.25	12.67	7.96	2.5
Merged-chr6-43462480-3	chr6	43461995	43462995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20066.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	30.32	33.64	19.42	27.66	31.72	23.31	31.69	26.97	22.48
Merged-chr5-66070040-3	chr5	66069539	66070539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28140.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	93.24	106.9	75.85	92.44	89.1	100.47	118.29	127.79	79.32
Merged-chr7-99535623-3	chr7	99535097	99536097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177231, exon 1 of 16)	5' UTR (NM_177231, exon 1 of 16)	111.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	199.07	125.79	138.74	155.19	106.36	131.02	108.79	91.53	70.57
Merged-chr9-67043950-3	chr9	67043449	67044449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164254)	promoter-TSS (NM_001164254)	-78.0	NM_001164256	22003.0	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	17.73	26.26	14.8	36.43	38.72	38.58	32.74	18.57	13.74
Merged-chr17-24165085-3	chr17	24164564	24165564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	-1331.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	180.2	151.14	116.54	190.27	129.22	122.18	189.06	217.1	118.04
Merged-chr9-85327354-3	chr9	85326853	85327853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160378)	promoter-TSS (NM_001160378)	-203.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	332.94	384.29	290.44	300.92	332.62	231.49	303.13	375.4	207.34
Merged-chr15-43477635-3	chr15	43477131	43478131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046064)	promoter-TSS (NR_046064)	402.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	169.33	182.93	114.69	153.16	182.4	148.7	151.03	176.87	96.8
Merged-chr2-39373268-3	chr2	39372746	39373746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146897.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	4.58	1.84	0.0	3.37	0.93	4.82	4.22	0.0	3.75
Merged-chr1-84317942-3	chr1	84317425	84318425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33280.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	24.03	50.69	37.0	36.43	40.59	49.03	30.63	34.93	33.1
Merged-chr13-67269122-3	chr13	67268640	67269640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-72.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	143.59	167.73	139.67	125.5	154.88	110.12	128.85	129.55	78.69
Merged-chr12-80812085-3	chr12	80811608	80812608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	21576.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	92.67	100.91	61.97	89.06	62.51	71.54	73.93	80.03	51.84
Merged-chr1-155054878-3	chr1	155054431	155055431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	28333.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	74.37	42.85	31.45	48.58	33.59	30.54	54.92	39.35	26.23
Merged-chr2-16135634-3	chr2	16135141	16136141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 33 of 38)	intron (NM_001310455, intron 33 of 38)	-220663.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	13.16	13.36	10.17	14.17	9.8	1.61	14.79	3.54	19.36
Merged-chr7-49778331-3	chr7	49777809	49778809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133740)	promoter-TSS (NM_133740)	-49.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	69.79	53.45	36.07	60.72	69.04	69.13	64.43	34.49	48.71
Merged-chr6-115814249-3	chr6	115813725	115814725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 7 of 8)	intron (NM_001110506, intron 7 of 8)	-5482.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	29.17	17.51	25.9	24.96	17.73	12.06	13.73	7.96	7.49
Merged-chr11-120549709-3	chr11	120549208	120550208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	19.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	306.62	161.74	177.59	318.47	186.14	159.95	223.91	189.25	126.15
Merged-chr15-78864052-3	chr15	78863552	78864552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-8523.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	388.42	340.06	222.91	377.84	277.11	288.56	440.43	442.17	220.46
Merged-chr7-126135103-3	chr7	126134593	126135593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-52682.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	95.53	102.29	63.82	95.14	76.51	61.09	78.16	72.96	57.46
Merged-chr7-126759456-3	chr7	126758954	126759954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011952)	promoter-TSS (NM_011952)	-172.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	24.03	11.06	11.1	31.71	16.79	35.37	27.46	15.92	24.36
Merged-chr10-11149335-3	chr10	11148852	11149852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172937)	promoter-TSS (NM_172937)	-78.0	NM_001077707	268281.0	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	54.92	51.61	63.82	65.45	44.78	58.68	47.53	41.12	47.46
Merged-chr10-68735899-3	chr10	68735401	68736401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	12155.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	123.56	131.32	91.57	174.08	127.36	87.61	201.73	217.1	104.92
Merged-chr15-99772476-3	chr15	99771958	99772958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028015)	promoter-TSS (NM_028015)	57.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	22.31	8.75	26.82	37.11	25.19	53.85	28.52	15.03	24.36
Merged-chr8-104591361-3	chr8	104590861	104591861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024606)	promoter-TSS (NM_001024606)	-107.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	68.07	40.09	46.25	62.07	54.58	46.62	80.27	63.67	39.35
Merged-chr1-191111409-3	chr1	191110903	191111903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12989.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	220.24	191.23	158.17	190.95	150.22	173.62	141.53	149.89	120.53
Merged-chr5-3420623-3	chr5	3420109	3421109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	76716.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	170.47	164.96	101.74	205.11	154.88	150.31	190.11	212.24	110.54
Merged-chr8-119778478-3	chr8	119777957	119778957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028883)	promoter-TSS (NM_028883)	-41.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	49.2	29.95	48.1	44.53	37.32	53.05	53.87	35.82	44.97
Merged-chr10-128489640-3	chr10	128489142	128490142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001114096, exon 29 of 29)	3' UTR (NM_001114096, exon 29 of 29)	3367.0	NM_001317220	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	90.96	95.84	71.22	71.52	58.31	84.4	60.2	87.55	60.58
Merged-chr7-127471374-3	chr7	127470886	127471886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145589)	promoter-TSS (NM_145589)	-228.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	300.33	223.94	237.71	255.72	150.22	211.4	214.41	215.78	171.75
Merged-chrX-103299133-1	chrX	103298633	103299633	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22265.0	NM_007674	12592.0	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	16.59	0.46	54.57	73.54	0.93	99.67	2.11	1.77	1.25
Merged-chr13-113794398-3	chr13	113793874	113794874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172595)	promoter-TSS (NM_172595)	-134.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	155.6	137.77	100.82	161.26	137.62	103.69	119.35	121.15	69.32
Merged-chr8-108714886-3	chr8	108714397	108715397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007496, exon 1 of 10)	5' UTR (NM_007496, exon 1 of 10)	253.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	133.86	102.29	160.02	112.0	86.77	124.59	97.17	65.0	53.08
Merged-chr2-36049363-3	chr2	36048842	36049842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029309)	promoter-TSS (NM_029309)	-50.0	NM_026703	68375.0	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	40.62	57.14	40.7	52.63	59.25	54.66	63.37	67.21	34.35
Merged-chr14-75168697-3	chr14	75168220	75169220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	MLTR11B|LTR|ERVK	32295.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	32.61	41.93	25.9	58.03	45.25	45.82	45.42	35.82	45.59
Merged-chrX-12087596-3	chrX	12087102	12088102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-7049.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	170.47	130.86	110.99	163.96	103.56	126.19	146.81	99.93	102.42
Merged-chr7-67463859-3	chr7	67463360	67464360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91002.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	125.28	169.11	145.22	152.49	135.29	189.69	174.27	180.4	100.55
Merged-chr2-165983164-3	chr2	165982663	165983663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1M|LTR|ERVL-MaLR	-9474.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	296.32	250.67	180.37	275.28	200.13	218.63	249.26	305.54	156.13
Merged-chr9-16046832-3	chr9	16046331	16047331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-172275.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	15.45	7.83	2.77	39.13	29.39	18.49	6.34	14.59	5.0
Merged-chr13-63278964-3	chr13	63278467	63279467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18180.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	21.17	44.7	29.6	50.6	55.05	44.21	25.35	22.55	17.49
Merged-chr17-69156768-3	chr17	69156271	69157271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013813)	promoter-TSS (NM_013813)	27.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	137.29	129.48	171.12	159.23	144.62	167.19	215.46	116.29	72.45
Merged-chr3-151749998-2	chr3	151749503	151750503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133871)	promoter-TSS (NM_133871)	-44.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	57.21	67.27	32.37	38.46	43.85	39.39	25.35	15.92	5.0
Merged-chrX-142390506-3	chrX	142389985	142390985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207625)	promoter-TSS (NM_207625)	50.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	198.5	201.82	164.64	217.93	180.07	180.85	196.45	231.7	129.9
Merged-chr12-39039939-3	chr12	39039434	39040434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256223.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	13.73	11.98	23.12	20.24	11.66	16.08	12.67	7.96	17.49
Merged-chr3-9644432-3	chr3	9643940	9644940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34355.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	9.15	6.91	5.55	17.54	12.13	20.9	7.39	11.94	9.99
Merged-chr4-153975141-3	chr4	153974665	153975665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007859)	promoter-TSS (NM_007859)	-84.0	NM_007859	13368.0	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	78.37	88.93	53.65	74.89	97.5	45.01	67.6	42.01	48.71
Merged-chr5-135772723-3	chr5	135772205	135773205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029659, intron 1 of 8)	intron (NM_029659, intron 1 of 8)	5596.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	25.17	26.73	15.72	24.96	22.86	27.33	39.08	45.1	13.74
Merged-chr14-75834406-3	chr14	75833898	75834898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1M8|LINE|L1	10566.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	371.83	364.94	201.64	386.61	289.7	250.78	342.2	358.16	194.85
Merged-chr7-126147392-3	chr7	126146907	126147907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	53094.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	60.07	71.88	67.52	56.0	38.72	76.36	53.87	75.17	53.08
Merged-chr9-53703205-3	chr9	53702721	53703721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	PB1D10|SINE|Alu	3011.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	93.82	113.35	91.57	73.54	69.51	77.97	110.9	131.77	59.95
Merged-chr12-111437671-3	chr12	111437164	111438164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4997.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	475.95	401.8	206.26	457.46	369.01	265.25	349.6	422.71	168.0
Merged-chr13-48625643-3	chr13	48625147	48626147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301781)	promoter-TSS (NM_001301781)	25.0	NM_207232	218232.0	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	60.07	57.6	42.55	72.87	61.11	91.63	89.78	54.83	40.59
Merged-chr17-43016543-3	chr17	43016053	43017053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178589)	promoter-TSS (NM_178589)	-2.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	88.67	96.76	114.69	85.69	87.24	73.14	66.54	68.98	38.72
Merged-chr6-31115055-3	chr6	31114554	31115554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51961.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	444.49	433.14	238.64	394.71	429.65	254.8	358.05	510.26	171.75
Merged-chr3-127790982-3	chr3	127790486	127791486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 1 of 2)	intron (NM_001356430, intron 1 of 2)	329.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	418.74	384.75	277.49	382.56	283.64	298.21	316.86	348.43	164.25
Merged-chr3-105047808-3	chr3	105047303	105048303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	B4A|SINE|B4	5150.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	184.77	223.02	168.34	170.7	166.54	156.74	219.69	292.27	125.53
Merged-chr14-30579314-3	chr14	30578824	30579824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7175.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	24.6	24.88	18.5	35.76	26.59	12.06	167.93	290.06	124.28
Merged-chr4-119232810-3	chr4	119232315	119233315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286148)	promoter-TSS (NM_001286148)	-91.0	NM_001012400	230696.0	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	41.76	24.88	39.77	42.51	16.79	20.09	29.57	30.51	19.36
Merged-chr9-65346674-3	chr9	65346183	65347183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016688, exon 1 of 5)	exon (NM_016688, exon 1 of 5)	615.0	NM_016688	50996.0	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	474.23	396.74	411.6	422.37	289.24	359.29	365.44	237.89	246.06
Merged-chr10-105841260-3	chr10	105840737	105841737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025602)	promoter-TSS (NM_025602)	143.0	NM_001359642	216292.0	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	175.62	139.16	112.84	192.97	126.89	117.35	177.44	170.68	93.05
Merged-chr5-72225314-3	chr5	72224811	72225811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21968.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	74.94	58.98	59.2	80.97	34.99	74.75	74.99	70.75	46.84
Merged-chr9-122122306-3	chr9	122121803	122122803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	4844.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	40.04	54.37	29.6	52.63	29.86	33.76	48.58	27.86	20.61
Merged-chr3-87338126-3	chr3	87337624	87338624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-19757.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	133.29	161.27	95.27	174.08	130.62	140.66	205.96	272.82	103.05
Merged-chr11-107451311-3	chr11	107450806	107451806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	19414.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	113.27	92.16	54.57	130.22	90.5	61.09	142.59	138.4	45.59
Merged-chr11-78983064-3	chr11	78982530	78983530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1894.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	184.2	174.18	98.97	217.93	189.4	180.05	171.1	226.39	112.42
Merged-chr15-103305297-3	chr15	103304804	103305804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5134.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	169.9	165.88	153.54	182.85	122.23	165.58	195.39	159.62	115.54
Merged-chr18-35939734-3	chr18	35939219	35940219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25111.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	6.86	11.52	1.85	8.77	4.67	1.61	7.39	3.1	2.5
Merged-chr7-104353437-3	chr7	104352948	104353948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-90.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	129.86	155.75	108.22	145.74	139.95	91.63	176.38	216.22	74.32
Merged-chr2-153239203-3	chr2	153238707	153239707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018807, intron 1 of 2)	intron (NM_018807, intron 1 of 2)	2151.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	162.46	144.69	75.85	160.58	163.28	127.8	163.71	199.86	72.45
Merged-chr13-41381625-3	chr13	41381134	41382134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-22633.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	18.88	15.21	14.8	18.89	15.39	24.92	12.67	15.48	7.49
Merged-chr1-66279815-1	chr1	66279315	66280315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 3 of 14)	intron (NM_001039934, intron 3 of 14)	-41909.0	NM_001310634	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	45.76	38.25	29.6	2.02	2.8	3.22	2.11	7.52	5.0
Merged-chr11-88955470-3	chr11	88954977	88955977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029023)	promoter-TSS (NM_029023)	-35.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	217.38	240.53	110.99	269.21	246.32	135.04	260.88	279.45	104.92
Merged-chr9-45269145-3	chr9	45268644	45269644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008348)	promoter-TSS (NM_008348)	5.0	NR_136903	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	212.8	168.19	118.39	179.47	154.41	162.37	203.84	188.81	111.17
Merged-chr16-24624613-3	chr16	24624133	24625133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95319.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	300.33	234.54	186.84	263.14	197.33	182.46	299.96	240.54	139.89
Merged-chr1-86487547-3	chr1	86487017	86488017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-39040.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	89.24	69.58	64.75	85.69	69.04	69.93	76.05	88.88	61.83
Merged-chr19-21818250-3	chr19	21817758	21818758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	39918.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	121.28	149.29	109.14	101.21	117.56	83.59	120.41	127.79	78.69
Merged-chr17-31658826-3	chr17	31658282	31659282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357907)	promoter-TSS (NM_001357907)	-18.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	330.07	337.29	258.99	333.99	329.82	226.67	330.59	225.95	109.92
Merged-chr11-59544184-3	chr11	59543693	59544693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	intron (NR_153314, intron 2 of 9)	1507.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	267.15	239.15	98.05	270.56	177.74	125.39	126.74	156.09	86.81
Merged-chr2-44953199-3	chr2	44952701	44953701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69976.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	121.85	93.54	72.15	125.5	90.5	73.95	99.28	92.86	56.83
Merged-chr1-143777180-3	chr1	143776678	143777678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-100.0	NM_001159866	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	249.42	177.86	154.47	253.02	296.23	189.69	240.81	240.98	104.92
Merged-chr19-43679742-3	chr19	43679235	43680235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4557.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	62.35	70.96	86.95	66.8	47.58	61.89	63.37	69.42	55.58
Merged-chr16-92400206-3	chr16	92399701	92400701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019466)	promoter-TSS (NM_019466)	-123.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	172.19	197.68	119.32	241.55	220.19	159.15	168.99	212.24	118.66
Merged-chr9-63132938-3	chr9	63132409	63133409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14071.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	192.78	204.13	126.72	255.04	267.78	147.9	194.34	196.32	81.19
Merged-chr13-94849547-2	chr13	94849038	94850038	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26089.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	5.15	0.46	0.0	10.12	4.2	3.22	6.34	6.19	1.25
Merged-chr13-93996652-3	chr13	93996153	93997153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61143.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	36.61	39.63	28.67	59.38	74.17	59.48	45.42	43.77	35.6
Merged-chr6-145341419-3	chr6	145340920	145341920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-46205.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	349.52	355.73	221.06	365.7	359.68	218.63	302.07	407.24	174.24
Merged-chr11-70791769-3	chr11	70791255	70792255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	20806.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	105.26	69.12	77.7	97.83	51.78	83.59	82.38	73.84	84.94
Merged-chr2-158144479-3	chr2	158143980	158144980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	1912.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	262.57	197.22	175.74	311.04	212.73	224.26	326.36	297.58	147.39
Merged-chr4-115828045-3	chr4	115827550	115828550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175308)	promoter-TSS (NM_175308)	-42.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	153.88	99.53	148.92	170.03	132.49	219.43	134.14	160.95	126.15
Merged-chr7-4915414-3	chr7	4914911	4915911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170759, intron 1 of 2)	CpG	194.0	NM_170759	232816.0	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	126.42	111.51	90.65	103.23	83.51	122.98	126.74	101.7	65.58
Merged-chr12-99965159-3	chr12	99964652	99965652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164427, intron 1 of 2)	intron (NM_001164427, intron 1 of 2)	653.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	105.26	86.17	96.2	121.45	135.29	114.14	121.46	133.98	90.56
Merged-chr15-64046062-3	chr15	64045569	64046569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13695.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	90.96	84.78	47.17	100.53	47.12	51.44	97.17	74.28	64.95
Merged-chr15-38384874-3	chr15	38384369	38385369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84158.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	153.31	169.11	104.52	196.34	146.95	150.31	162.65	196.32	81.19
Merged-chr2-144594057-3	chr2	144593581	144594581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033297)	promoter-TSS (NM_001033297)	16.0	NM_001033297	228715.0	Mm.27391	NM_001033297	ENSMUSG00000074754	Smim26	Gm561	small integral membrane protein 26	protein-coding	18.31	23.04	22.2	30.36	34.06	41.8	20.07	25.2	19.98
Merged-chr16-38395305-3	chr16	38394795	38395795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134102)	TTS (NM_134102)	33105.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	76.66	33.18	19.42	112.68	65.78	79.58	60.2	45.1	36.85
Merged-chr5-43782183-5	chr5	43781704	43782704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159963)	promoter-TSS (NM_001159963)	-55.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	203.08	186.16	162.79	253.02	202.93	179.24	256.65	187.04	135.52
Merged-chr12-85490124-2	chr12	85489622	85490622	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16232.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	84.09	119.34	108.22	138.99	110.56	143.88	110.9	113.64	106.17
Merged-chr11-60835338-2	chr11	60834834	60835834	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	ORR1C1|LTR|ERVL-MaLR	4703.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	3.43	3.23	5.55	123.47	77.44	67.52	122.52	114.08	61.83
Merged-chr10-68723829-3	chr10	68723347	68724347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177794, exon 1 of 6)	5' UTR (NM_177794, exon 1 of 6)	101.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	228.25	196.29	160.02	223.33	237.45	201.75	332.7	374.96	169.87
Merged-chr12-51377469-3	chr12	51376973	51377973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029825)	promoter-TSS (NM_029825)	-40.0	NM_001306178	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	251.7	370.93	148.92	228.73	367.14	164.78	261.93	363.02	126.78
Merged-chr14-52279106-1	chr14	52278606	52279606	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023434)	promoter-TSS (NM_023434)	-40.0	NM_023434	268741.0	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	67.5	58.52	53.65	68.15	41.05	72.34	72.88	72.07	50.59
Merged-chr6-13606513-3	chr6	13606018	13607018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	1580.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	221.38	265.87	147.07	165.31	146.95	88.42	143.64	185.71	88.68
Merged-chr12-79172149-3	chr12	79171687	79172687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	CpG	271.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	332.36	319.78	270.09	403.48	345.68	332.77	317.91	318.36	164.25
Merged-chrX-48463046-4	chrX	48462516	48463516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	116.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	49.77	39.17	38.85	37.78	27.99	43.4	50.7	45.54	21.23
Merged-chr11-106106361-3	chr11	106105858	106106858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	21456.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	45.19	32.72	36.07	41.16	23.79	55.46	41.19	27.41	29.35
Merged-chr2-164746027-3	chr2	164745552	164746552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133763)	promoter-TSS (NM_133763)	37.0	NM_133763	76233.0	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	232.25	157.59	116.54	204.44	98.9	98.06	230.25	111.43	57.46
Merged-chr1-180813662-3	chr1	180813173	180814173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008210)	promoter-TSS (NM_008210)	-68.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	175.62	188.92	157.24	186.9	132.49	163.17	198.56	148.57	144.89
Merged-chr19-42170590-3	chr19	42170103	42171103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177319)	promoter-TSS (NM_177319)	36.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	147.02	151.14	106.37	126.17	137.62	111.73	92.94	109.22	57.46
Merged-chr2-18835696-3	chr2	18835185	18836185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33867.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	14.87	9.68	1.85	12.82	7.46	4.82	7.39	9.29	6.25
Merged-chr4-62681624-3	chr4	62681124	62682124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	7650.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	15.45	11.52	5.55	20.24	16.33	8.04	12.67	9.73	1.25
Merged-chr17-43137996-3	chr17	43137502	43138502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20289.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	128.14	143.76	57.35	132.24	116.16	112.53	80.27	81.8	56.83
Merged-chr10-127380589-3	chr10	127380086	127381086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359244)	promoter-TSS (NM_001359244)	-82.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	191.07	115.2	103.59	175.43	79.31	110.92	182.72	122.92	86.18
Merged-chr2-119897222-3	chr2	119896729	119897729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164274)	promoter-TSS (NM_001164274)	1.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	291.18	274.17	198.87	257.07	252.85	157.54	240.81	271.93	139.27
Merged-chr11-103992867-3	chr11	103992360	103993360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25989.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	15.45	17.97	16.65	28.34	13.06	24.11	19.01	11.5	8.74
Merged-chrX-159638677-3	chrX	159638144	159639144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	11372.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	28.03	35.48	19.42	33.74	23.33	42.6	25.35	25.65	31.85
Merged-chr14-76402752-3	chr14	76402257	76403257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12204.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	20.02	12.9	11.1	12.82	24.72	10.45	15.84	15.92	5.0
Merged-chr4-103119376-3	chr4	103118868	103119868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039081)	promoter-TSS (NM_001039081)	-22.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	199.07	137.77	217.36	189.6	104.03	147.09	183.78	101.7	143.02
Merged-chr10-57792620-3	chr10	57792124	57793124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1920.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	108.69	157.59	82.32	118.08	105.43	131.02	101.39	118.06	76.82
Merged-chr19-5610025-5	chr19	5609492	5610492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037603)	promoter-TSS (NR_037603)	102.0	NM_001199249	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	470.23	398.12	295.99	379.87	339.15	288.56	408.74	454.99	222.96
Merged-chr9-65580230-3	chr9	65579721	65580721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153119)	promoter-TSS (NM_153119)	-134.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	167.04	91.24	129.49	191.62	113.36	112.53	178.5	221.97	101.17
Merged-chr4-97751941-3	chr4	97751453	97752453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	CpG	-25673.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	370.69	456.64	262.69	356.25	377.87	278.11	343.26	425.81	203.6
Merged-chr2-129387823-4	chr2	129387351	129388351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16712.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	147.02	136.39	87.87	149.79	113.83	153.52	151.03	142.38	106.79
Merged-chr13-111655479-3	chr13	111654987	111655987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30691.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	20.59	9.68	29.6	24.96	19.59	16.08	27.46	32.72	14.99
Merged-chr5-30887457-3	chr5	30886939	30887939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1413.0	NM_174849	231093.0	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	54.92	58.98	57.35	53.98	48.05	62.7	65.48	66.33	56.21
Merged-chr13-81163326-1	chr13	81162826	81163826	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	199252.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.01	7.37	3.7	8.1	10.26	19.29	15.84	12.82	6.25
Merged-chr14-70107149-3	chr14	70106590	70107590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	6997.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	38.33	60.82	35.15	46.56	30.79	76.36	60.2	49.08	61.83
Merged-chr2-154892807-3	chr2	154892270	154893270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026030, exon 1 of 9)	5' UTR (NM_026030, exon 1 of 9)	136.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	192.21	232.7	163.72	188.25	216.93	148.7	148.92	169.79	120.53
Merged-chr6-124723816-3	chr6	124723328	124724328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-5438.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	70.93	52.99	69.37	66.8	40.59	95.65	84.49	89.76	58.08
Merged-chr3-79174216-3	chr3	79173729	79174729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28354.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	173.33	164.96	102.67	170.7	121.76	163.17	179.55	206.93	93.05
Merged-chr4-46485851-3	chr4	46485343	46486343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3486.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	28.03	21.66	25.9	31.71	20.99	51.44	50.7	22.55	35.6
Merged-chr13-21716831-3	chr13	21716331	21717331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	419.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	182.49	206.89	134.12	136.29	153.01	161.56	165.82	237.44	127.4
Merged-chr9-35056795-3	chr9	35056293	35057293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-59935.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	194.5	206.89	163.72	163.96	114.76	163.97	189.06	243.63	171.75
Merged-chr1-88654883-3	chr1	88654393	88655393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47298.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	51.48	50.69	45.32	62.75	29.39	52.25	36.97	18.57	29.35
Merged-chr2-22724302-3	chr2	22723829	22724829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-49998.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	38.33	33.64	37.92	31.71	32.19	43.4	49.64	41.12	31.85
Merged-chr12-111946207-1	chr12	111945707	111946707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1725.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	40.62	26.73	28.67	23.62	28.92	34.56	23.24	22.55	29.35
Merged-chr5-21412281-3	chr5	21411788	21412788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	12389.0	NM_029195	75172.0	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	237.4	207.35	105.44	157.21	129.69	89.22	213.35	268.4	96.8
Merged-chr3-97211401-3	chr3	97210897	97211897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029933, intron 7 of 9)	intron (NM_029933, intron 7 of 9)	15967.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	58.92	73.73	46.25	45.21	56.45	50.64	65.48	75.61	49.96
Merged-chr4-108301181-3	chr4	108300691	108301691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033634)	promoter-TSS (NM_001033634)	-101.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	121.85	136.39	137.82	148.44	97.03	137.45	137.3	130.44	83.06
Merged-chr19-11912287-3	chr19	11911799	11912799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172635)	promoter-TSS (NM_172635)	-100.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	651.0	487.05	302.46	601.85	523.89	348.04	532.32	518.66	259.8
Merged-chr12-33314194-4	chr12	33313635	33314635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	11620.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	31.46	45.62	33.3	55.33	27.99	67.52	62.31	67.65	56.21
Merged-chr3-52088588-3	chr3	52088097	52089097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16409.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	154.45	122.57	111.92	127.52	87.24	97.26	117.24	120.27	68.7
Merged-chr9-14835533-3	chr9	14835034	14836034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310728, exon 19 of 19)	3' UTR (NM_001310728, exon 19 of 19)	-24676.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	96.11	91.7	73.07	115.38	84.44	117.35	105.62	73.4	73.07
Merged-chr6-134243756-3	chr6	134243248	134244248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-152581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	39.47	26.73	14.8	39.13	20.53	17.68	20.07	18.13	21.86
Merged-chr13-97858087-3	chr13	97857589	97858589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106977.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	21.74	11.06	9.25	14.84	8.4	12.86	21.12	10.61	15.61
Merged-chr2-136891127-2	chr2	136890643	136891643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028201)	promoter-TSS (NM_028201)	-75.0	NM_028201	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	288.32	240.99	204.41	270.56	240.25	192.11	283.06	280.78	136.77
Merged-chr10-8065898-3	chr10	8065398	8066398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109775.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	67.5	91.7	62.9	66.12	63.91	77.16	77.1	82.24	78.69
Merged-chr2-102942240-3	chr2	102941722	102942722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	173.33	183.39	101.74	193.64	197.8	147.9	183.78	212.68	109.29
Merged-chr2-49417181-3	chr2	49416690	49417690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34296.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	62.93	82.48	60.12	35.09	44.32	56.27	62.31	56.6	53.08
Merged-chr6-89643967-3	chr6	89643465	89644465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001178058)	promoter-TSS (NM_001178058)	-23.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	70.36	80.18	82.32	76.92	94.7	106.1	98.23	86.22	62.45
Merged-chr6-53573255-3	chr6	53572716	53573716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172728)	promoter-TSS (NM_172728)	-158.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	164.18	170.03	91.57	126.85	91.9	55.46	128.85	139.72	69.95
Merged-chr10-80173073-3	chr10	80172574	80173574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152857)	TTS (NR_152857)	130.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	282.59	234.08	198.87	246.95	234.19	135.04	238.7	251.15	134.27
Merged-chr2-119548265-2	chr2	119547763	119548763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172857)	promoter-TSS (NM_172857)	556.0	NM_019769	56398.0	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	121.28	127.18	117.47	114.03	123.62	159.15	65.48	55.71	45.59
Merged-chr12-110840962-3	chr12	110840440	110841440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	-1.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	40.04	33.64	29.6	33.74	38.72	26.53	20.07	34.93	11.24
Merged-chr2-90545462-3	chr2	90544961	90545961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	35186.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	109.83	96.76	73.07	124.15	52.25	36.97	114.07	95.07	74.94
Merged-chr16-91545152-3	chr16	91544647	91545647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-1947.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	38.9	22.58	50.87	37.78	18.66	32.96	50.7	46.87	58.08
Merged-chr13-100183310-3	chr13	100182813	100183813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 5 of 15)	intron (NM_001126182, intron 5 of 15)	18809.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	18.88	27.65	18.5	53.98	45.25	34.56	90.83	78.71	40.59
Merged-chr10-34096684-3	chr10	34096200	34097200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178908)	promoter-TSS (NM_178908)	-181.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	31.46	26.73	12.95	24.96	25.19	24.11	17.96	18.57	22.48
Merged-chr17-39847222-3	chr17	39846732	39847732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	4235.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	247.13	235.46	180.37	117.4	97.03	91.63	101.39	65.44	121.16
Merged-chr7-98415666-3	chr7	98415158	98416158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24758.0	NM_001130693	14918.0	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	42.9	27.65	11.1	42.51	21.93	28.94	5.28	15.03	11.24
Merged-chr12-35153226-2	chr12	35152729	35153729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41668.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	23.45	26.73	24.05	37.11	26.12	33.76	2.11	15.48	1.25
Merged-chr12-69371506-2	chr12	69371016	69372016	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007481)	promoter-TSS (NM_007481)	-634.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	302.04	286.15	211.81	301.6	288.3	223.45	287.28	322.78	141.14
Merged-chr9-56962594-3	chr9	56962083	56963083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178374, intron 2 of 8)	intron (NM_178374, intron 2 of 8)	11659.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	50.34	54.83	50.87	46.56	40.12	34.56	45.42	60.13	54.96
Merged-chr10-82178538-4	chr10	82178033	82179033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50520.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	92.67	94.46	78.62	88.39	76.51	104.49	117.24	113.19	77.44
Merged-chr7-83720497-3	chr7	83719993	83720993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 2 of 18)	intron (NM_001360088, intron 2 of 18)	11905.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	8.58	7.37	9.25	8.1	3.27	4.82	11.62	14.15	9.99
Merged-chr10-94909552-3	chr10	94909069	94910069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 3 of 30)	intron (NM_018797, intron 3 of 30)	35009.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	53.77	37.78	12.95	56.68	36.85	22.51	36.97	24.32	13.74
Merged-chr15-75062325-3	chr15	75061801	75062801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13464.0	NM_001252056	17067.0	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	1.14	5.07	3.7	3.37	1.4	1.61	7.39	8.84	11.87
Merged-chr5-140642263-3	chr5	140641751	140642751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	6780.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	147.02	160.35	147.99	198.37	165.14	159.95	229.19	189.69	78.69
Merged-chr4-122836241-3	chr4	122835746	122836746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	19.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	68.65	78.33	78.62	103.91	107.76	87.61	127.8	122.48	49.96
Merged-chr11-75047945-3	chr11	75047436	75048436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	18055.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	226.53	211.04	131.34	213.21	143.22	167.99	204.9	212.24	96.8
Merged-chr4-152165226-3	chr4	152164717	152165717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6350.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	42.9	33.64	44.4	33.74	27.06	44.21	47.53	43.33	39.97
Merged-chr16-23287479-3	chr16	23286980	23287980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-2990.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	140.73	135.93	102.67	156.53	130.16	125.39	108.79	118.5	85.56
Merged-chr3-79287307-3	chr3	79286802	79287802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-58074.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	339.8	253.43	214.59	248.3	197.33	146.29	177.44	133.09	123.03
Merged-chr15-6260508-3	chr15	6260012	6261012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39277.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	80.66	71.88	44.4	78.27	56.91	82.79	38.02	52.18	39.97
Merged-chr17-48247693-3	chr17	48247187	48248187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021407)	promoter-TSS (NM_021407)	-42.0	NM_021407	58218.0	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	28.03	12.44	15.72	29.69	9.33	24.92	21.12	11.5	16.86
Merged-chr12-102367310-3	chr12	102366864	102367864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	72449.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	129.28	168.65	149.84	163.96	198.27	211.4	179.55	212.68	76.82
Merged-chr5-5232737-3	chr5	5232246	5233246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 3 of 14)	L1_Mur3|LINE|L1	33322.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	14.3	14.28	9.25	7.42	6.53	6.43	9.51	2.65	9.99
Merged-chr3-97824124-3	chr3	97823596	97824596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-56082.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	29.17	35.94	12.95	24.96	21.93	24.11	26.4	13.27	11.87
Merged-chr1-172311451-3	chr1	172310985	172311985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-882.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	141.87	141.46	117.47	146.41	96.1	101.28	137.3	160.95	110.54
Merged-chr13-62558543-3	chr13	62558072	62559072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162911)	promoter-TSS (NM_001162911)	57.0	NM_175252	77117.0	Mm.440905	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	19.45	17.97	12.95	17.54	13.06	16.08	14.79	12.82	15.61
Merged-chr19-8941882-3	chr19	8941389	8942389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011842)	promoter-TSS (NM_011842)	-31.0	NM_011842	23942.0	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	267.72	295.82	217.36	206.46	271.51	228.28	203.84	228.16	133.02
Merged-chr1-60158602-3	chr1	60158084	60159084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22015.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	29.17	26.26	14.8	17.54	14.93	11.25	32.74	34.05	18.11
Merged-chr15-58875976-3	chr15	58875466	58876466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026642, exon 1 of 1)	3' UTR (NM_026642, exon 1 of 1)	3317.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	143.59	129.94	96.2	113.35	111.5	125.39	118.29	110.54	80.56
Merged-chr19-4811156-3	chr19	4810656	4811656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019869, intron 1 of 2)	CpG	478.0	NM_001290127	102902673.0	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	287.74	269.1	188.69	258.42	271.04	236.31	245.04	282.1	171.75
Merged-chr15-10834253-1	chr15	10833753	10834753	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5202.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	5.15	3.69	5.55	8.1	2.8	14.47	6.34	4.42	5.0
Merged-chr2-22746962-3	chr2	22746448	22747448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27379.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	130.43	122.11	72.15	106.61	60.18	71.54	85.55	100.81	63.08
Merged-chr19-10914511-3	chr19	10914010	10915010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009580, intron 11 of 11)	intron (NM_009580, intron 11 of 11)	6091.0	NM_009580	22786.0	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	36.61	12.9	5.55	22.27	12.6	6.43	19.01	7.52	3.75
Merged-chr18-33794828-3	chr18	33794330	33795330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038151)	promoter-TSS (NR_038151)	-62.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	113.27	105.52	77.7	91.09	89.57	77.16	142.59	97.72	74.94
Merged-chr9-96395317-3	chr9	96394839	96395839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30908.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	135.58	126.25	135.04	147.76	98.9	138.25	129.91	137.51	134.9
Merged-chr5-31180038-3	chr5	31179503	31180503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027901, exon 1 of 19)	5' UTR (NM_027901, exon 1 of 19)	141.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	203.08	230.39	222.91	176.78	176.34	200.95	177.44	211.36	153.01
Merged-chr17-56133957-3	chr17	56133471	56134471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013662)	promoter-TSS (NM_013662)	-119.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	116.13	118.42	125.79	132.92	121.29	151.11	185.89	184.38	94.93
Merged-chr2-167361810-3	chr2	167361289	167362289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12611.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	16.02	11.98	14.8	11.47	7.93	8.84	21.12	21.22	10.62
Merged-chrX-101639946-3	chrX	101639429	101640429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139144)	promoter-TSS (NM_139144)	-122.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	81.8	113.81	56.42	93.11	87.24	89.22	107.73	119.39	62.45
Merged-chr17-16951480-3	chr17	16950984	16951984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112619.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	28.03	31.79	31.45	18.22	16.33	45.82	36.97	22.11	28.73
Merged-chr2-141008623-3	chr2	141008131	141009131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-337155.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.86	5.53	5.55	5.4	2.33	2.41	5.28	2.21	5.62
Merged-chr12-3791968-3	chr12	3791473	3792473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15007.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	32.04	42.39	30.52	31.04	29.39	53.05	62.31	63.23	29.98
Merged-chr12-73716035-3	chr12	73715534	73716534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 9 of 13)	intron (NM_008856, intron 9 of 13)	131238.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	10.3	13.36	9.25	58.03	54.11	49.83	17.96	18.57	13.74
Merged-chr11-120347949-1	chr11	120347449	120348449	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105900)	promoter-TSS (NR_105900)	-536.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	238.55	198.14	221.99	165.98	140.42	167.19	196.45	210.91	166.75
Merged-chr15-59552645-3	chr15	59552167	59553167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-95987.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	68.65	67.74	27.75	77.59	49.92	53.05	49.64	51.29	26.23
Merged-chr11-78536303-3	chr11	78535807	78536807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159392)	promoter-TSS (NM_001159392)	-47.0	NM_009395	21927.0	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	284.88	232.24	206.26	224.68	211.79	184.87	220.74	292.71	121.16
Merged-chr12-32208703-3	chr12	32208199	32209199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-50.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	128.14	96.76	85.1	90.41	84.9	95.65	125.69	96.39	76.19
Merged-chr6-13069800-3	chr6	13069319	13070319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027992)	promoter-TSS (NM_027992)	60.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	131.0	125.79	90.65	132.24	116.63	84.4	175.33	142.38	64.95
Merged-chr2-4453223-3	chr2	4452723	4453723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	52247.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	126.42	92.16	71.22	85.01	85.84	63.5	144.7	168.91	64.33
Merged-chr9-80547382-1	chr9	80546882	80547882	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81944.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	1.14	6.45	0.0	5.4	2.8	1.61	1.06	1.77	1.25
Merged-chr16-55750220-3	chr16	55749738	55750738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71900.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	11.44	16.13	5.55	12.14	14.46	12.86	11.62	6.63	8.74
Merged-chr12-111376262-3	chr12	111375770	111376770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1448.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	125.85	119.8	84.17	134.27	95.63	85.2	106.67	122.04	82.44
Merged-chr18-36744598-3	chr18	36744100	36745100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011879)	promoter-TSS (NM_011879)	-13.0	NM_010885	17991.0	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	307.19	309.19	212.74	260.44	245.85	188.89	277.78	316.59	159.25
Merged-chr1-88224659-1	chr1	88224159	88225159	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-2361.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	37.76	35.02	30.52	42.51	31.72	40.99	45.42	51.29	69.95
Merged-chr13-115090202-3	chr13	115089694	115090694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-36.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	253.42	150.68	94.35	239.52	207.13	90.83	220.74	195.88	81.81
Merged-chr2-130284410-3	chr2	130283910	130284910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130884)	promoter-TSS (NM_130884)	41.0	NM_130884	170718.0	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	75.51	72.8	68.45	66.12	58.31	70.73	89.78	86.22	49.96
Merged-chr11-77983736-3	chr11	77983298	77984298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174852, intron 1 of 14)	intron (NM_174852, intron 1 of 14)	982.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	90.96	131.32	143.37	78.94	88.64	151.11	120.41	134.42	145.51
Merged-chr17-29614867-3	chr17	29614366	29615366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132314)	promoter-TSS (NR_132314)	77.0	NM_021419	58230.0	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	88.67	72.8	84.17	97.16	70.44	90.02	78.16	49.08	44.34
Merged-chr14-54754132-3	chr14	54753638	54754638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	27748.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	174.48	160.81	141.52	148.44	127.36	142.27	208.07	240.98	83.69
Merged-chr2-6366862-3	chr2	6366371	6367371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14135.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	24.6	23.5	11.1	43.18	19.59	17.68	28.52	22.55	16.86
Merged-chr17-71287790-3	chr17	71287302	71288302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	23209.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	258.0	187.54	103.59	321.17	223.92	178.44	126.74	116.29	38.72
Merged-chr4-137610466-3	chr4	137609966	137610966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	16294.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	62.35	50.23	60.12	64.77	55.05	86.81	70.76	69.42	42.47
Merged-chr12-25100864-1	chr12	25100364	25101364	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4772.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	285.45	312.87	274.71	277.31	321.89	230.69	292.56	356.39	182.99
Merged-chr11-61762107-3	chr11	61761573	61762573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164242)	promoter-TSS (NM_001164242)	15.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	227.68	170.03	98.97	214.56	114.76	102.08	160.54	94.62	80.56
Merged-chr19-34290450-3	chr19	34289988	34290988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146708)	promoter-TSS (NM_001146708)	-171.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	11.44	9.22	11.1	13.49	8.4	6.43	33.8	15.48	8.12
Merged-chr11-55155223-3	chr11	55154721	55155721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3515.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	90.96	75.11	45.32	57.35	75.11	102.88	73.93	73.4	63.08
Merged-chr11-101087283-3	chr11	101086775	101087775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011550)	promoter-TSS (NM_011550)	-15.0	NM_011550	21428.0	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	129.28	99.07	74.0	122.8	107.76	98.87	117.24	105.24	106.79
Merged-chr2-157501527-3	chr2	157501026	157502026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58552.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	42.33	29.95	16.65	51.95	32.66	42.6	31.69	20.78	9.99
Merged-chr5-66015740-3	chr5	66015242	66016242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001127382)	TTS (NM_001127382)	-11457.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	157.31	113.35	91.57	181.5	104.96	151.92	164.76	154.32	79.32
Merged-chr17-88123891-3	chr17	88123407	88124407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1605.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	76.08	69.12	47.17	80.29	75.11	74.75	86.61	87.55	91.81
Merged-chr9-124423766-3	chr9	124423272	124424272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015516)	promoter-TSS (NR_015516)	-15.0	NR_102721	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	716.21	522.99	365.36	573.51	441.32	380.19	518.59	485.06	292.9
Merged-chr12-103341834-3	chr12	103341332	103342332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14169.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	244.27	215.65	178.52	194.99	88.17	67.52	197.51	221.08	50.59
Merged-chr19-9982709-4	chr19	9982291	9983291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073181, exon 2 of 5)	non-coding (NR_073181, exon 2 of 5)	145.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	280.31	213.34	169.27	259.09	167.48	213.0	221.8	208.7	153.01
Merged-chrX-12813380-3	chrX	12812900	12813900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045852, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	51122.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	82.38	69.58	38.85	78.94	71.38	81.99	61.26	61.02	29.35
Merged-chr12-119484129-3	chr12	119483630	119484630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40720.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	8.58	12.9	5.55	12.14	15.39	7.23	24.29	19.46	5.0
Merged-chr1-92052419-3	chr1	92051916	92052916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	127925.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	13.16	8.75	16.65	18.22	15.86	12.86	9.51	2.21	8.74
Merged-chr14-115042163-3	chr14	115041653	115042653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1518.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	54.92	20.27	64.75	50.6	10.73	36.17	65.48	15.92	31.23
Merged-chr16-93883835-3	chr16	93883347	93884347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028083)	promoter-TSS (NM_028083)	-54.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	28.03	19.81	7.4	37.78	22.86	22.51	49.64	48.2	14.99
Merged-chr11-45955259-3	chr11	45954802	45955802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	-114.0	NM_001290737	66628.0	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	40.62	37.78	55.5	35.76	31.72	45.01	73.93	48.2	34.97
Merged-chr1-105965394-3	chr1	105964902	105965902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24880.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	294.61	272.78	170.19	293.5	250.98	179.24	245.04	298.91	109.92
Merged-chr8-119425000-3	chr8	119424499	119425499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12163.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	100.68	119.34	70.3	126.17	121.76	111.73	117.24	104.35	52.46
Merged-chr9-65294191-3	chr9	65293664	65294664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011802)	promoter-TSS (NM_011802)	-96.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	128.71	140.08	128.57	142.37	120.83	110.92	142.59	143.7	61.83
Merged-chr16-5254500-3	chr16	5253986	5254986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	1470.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	34.9	46.08	36.07	44.53	54.58	41.8	48.58	52.62	34.97
Merged-chr10-122562692-3	chr10	122562187	122563187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7204.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	50.91	64.97	53.65	68.82	66.71	82.79	121.46	145.92	73.07
Merged-chr11-103175217-3	chr11	103174711	103175711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	4073.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	29.17	29.95	22.2	28.34	22.39	54.66	26.4	16.8	19.98
Merged-chr11-118400747-3	chr11	118400240	118401240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	MLTR14|LTR|ERV1	1219.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	53.77	48.38	28.67	42.51	27.99	56.27	52.81	34.05	33.1
Merged-chr19-24280441-3	chr19	24279953	24280953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008044, exon 1 of 5)	exon (NM_008044, exon 1 of 5)	133.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	40.04	33.64	39.77	39.81	28.46	36.17	34.85	22.55	3.12
Merged-chr11-70700257-3	chr11	70699757	70700757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	-102.0	NM_001252485	103844.0	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	189.35	164.96	147.99	207.14	159.55	127.0	172.16	158.3	101.8
Merged-chr6-87806239-3	chr6	87805735	87806735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	3522.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	157.89	99.53	87.87	126.17	55.51	86.81	139.42	108.77	65.58
Merged-chr16-38452731-3	chr16	38452221	38453221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007414)	promoter-TSS (NM_007414)	-32.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	239.69	220.72	133.19	196.34	210.86	179.24	261.93	197.21	153.63
Merged-chr4-135203414-3	chr4	135202904	135203904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69356.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	29.75	26.73	12.02	38.46	17.73	20.09	29.57	19.01	11.87
Merged-chr10-128303346-3	chr10	128302891	128303891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252327)	promoter-TSS (NM_001252327)	56.0	NM_001252326	103135.0	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	541.16	429.45	258.99	479.05	367.14	256.41	406.63	458.09	188.61
Merged-chr11-87757318-3	chr11	87756840	87757840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-385.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	165.32	156.21	87.87	123.47	98.43	132.63	164.76	188.36	106.79
Merged-chr13-6548138-3	chr13	6547654	6548654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145131)	promoter-TSS (NM_145131)	-3.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	45.19	41.47	20.35	51.95	48.05	56.27	50.7	50.85	29.35
Merged-chr15-37972845-3	chr15	37972347	37973347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 56 of 58)	intron (NM_001112721, intron 56 of 58)	-11792.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	172.19	182.01	75.85	230.75	191.27	147.09	211.24	298.91	83.06
Merged-chr3-106485197-3	chr3	106484711	106485711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028110)	promoter-TSS (NM_028110)	702.0	NR_033207	69206.0	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	94.96	111.51	114.69	125.5	87.24	127.8	118.29	113.64	53.08
Merged-chr17-31075658-3	chr17	31075164	31076164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	17970.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	307.76	305.5	210.89	425.75	320.96	222.65	350.65	443.94	159.88
Merged-chr5-115500568-3	chr5	115500042	115501042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-6134.0	NM_011223	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	157.31	157.59	86.02	146.41	85.37	77.16	180.61	271.49	141.14
Merged-chr19-4122074-3	chr19	4121556	4122556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-481.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	315.2	306.42	202.56	236.83	185.67	203.36	243.98	317.03	173.62
Merged-chr17-74018427-3	chr17	74017938	74018938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	Lx8|LINE|L1	29478.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	61.21	47.92	32.37	68.15	95.63	71.54	66.54	57.92	40.59
Merged-chr2-31108399-3	chr2	31107902	31108902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-11902.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	47.48	47.92	38.85	59.38	41.52	47.42	40.14	51.29	26.85
Merged-chr5-129925014-3	chr5	129924512	129925512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16472.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	37.18	30.41	37.92	39.81	45.72	17.68	14.79	15.92	4.37
Merged-chr5-99334178-3	chr5	99333655	99334655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-81228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	84.09	72.34	60.12	68.82	52.72	53.05	62.31	59.69	39.97
Merged-chr19-43524632-3	chr19	43524127	43525127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-22.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	237.4	219.79	145.22	262.47	206.2	154.33	245.04	265.3	149.26
Merged-chr17-35193180-3	chr17	35192686	35193686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1321.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	151.02	128.1	86.95	116.05	74.64	87.61	58.09	57.92	39.35
Merged-chr2-126475936-3	chr2	126475449	126476449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	15604.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	170.47	143.76	98.97	191.62	168.41	151.92	90.83	108.33	74.32
Merged-chr13-66905253-3	chr13	66904686	66905686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177750)	promoter-TSS (NM_001177750)	164.0	NM_026219	67530.0	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	117.84	152.06	95.27	136.97	124.56	123.78	302.07	363.02	162.38
Merged-chr19-60874534-3	chr19	60874039	60875039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007452)	promoter-TSS (NM_007452)	-1.0	NM_007452	11757.0	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	40.04	33.64	19.42	48.58	31.26	53.85	55.98	41.56	24.98
Merged-chr10-88504008-3	chr10	88503501	88504501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-31.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	61.21	40.09	31.45	63.42	52.25	49.83	52.81	45.54	23.11
Merged-chr9-64811193-3	chr9	64810705	64811705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 1 of 34)	CpG	194.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	255.71	159.89	124.87	188.25	110.1	125.39	154.2	137.07	69.32
Merged-chr18-39653034-3	chr18	39652534	39653534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120463.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	18.31	19.81	20.35	27.66	21.93	32.96	24.29	26.09	33.72
Merged-chr18-89181793-3	chr18	89181294	89182294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15633.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	17.73	27.65	17.57	18.22	8.4	10.45	11.62	14.59	20.61
Merged-chr6-56923891-3	chr6	56923370	56924370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026004)	promoter-TSS (NM_026004)	62.0	NM_026004	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	67.5	77.41	83.25	85.69	66.24	87.61	92.94	90.2	64.95
Merged-chr11-115209378-3	chr11	115208874	115209874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	21887.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	23.45	15.67	12.95	21.59	7.46	17.68	27.46	12.82	23.73
Merged-chr6-134120877-3	chr6	134120380	134121380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	85180.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	94.39	61.28	46.25	86.36	51.78	35.37	83.44	65.88	43.72
Merged-chr6-142756706-3	chr6	142756200	142757200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009908)	promoter-TSS (NM_009908)	14.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	180.2	143.76	95.27	199.04	160.95	107.71	147.87	113.64	62.45
Merged-chr8-121590381-3	chr8	121589888	121590888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026160)	promoter-TSS (NM_026160)	-80.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	184.77	155.28	173.89	184.2	185.2	171.21	200.68	158.3	128.03
Merged-chr16-93028869-3	chr16	93028361	93029361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202787.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	180.77	143.3	82.32	170.7	116.16	98.06	83.44	91.09	38.72
Merged-chr1-190979327-3	chr1	190978831	190979831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144879)	promoter-TSS (NM_144879)	-35.0	NR_027352	226841.0	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	4.58	7.37	5.55	9.45	6.06	3.22	5.28	3.1	3.12
Merged-chr7-100216193-3	chr7	100215693	100216693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11414.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	74.37	96.3	67.52	112.68	92.84	102.08	82.38	80.92	84.31
Merged-chr6-116227879-3	chr6	116227387	116228387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	19854.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	64.64	72.8	73.07	78.94	58.31	56.27	66.54	53.5	66.2
Merged-chr9-107563226-3	chr9	107562744	107563744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019742)	promoter-TSS (NM_019742)	-11.0	NM_019742	80385.0	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	32.61	23.04	36.07	26.99	28.46	35.37	22.18	27.41	12.49
Merged-chr7-31041801-3	chr7	31041306	31042306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111073)	promoter-TSS (NM_001111073)	33.0	NM_001111073	18301.0	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	54.92	53.91	36.07	80.97	83.51	76.36	74.99	65.88	40.59
Merged-chr11-107441179-3	chr11	107440680	107441680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	29540.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	47.48	31.79	23.12	37.78	32.19	20.9	32.74	44.22	14.99
Merged-chr12-91666817-3	chr12	91666299	91667299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-76312.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	50.34	56.22	33.3	57.35	49.92	51.44	38.02	32.28	28.1
Merged-chr11-75655916-3	chr11	75655423	75656423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-92.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	562.33	468.62	276.56	555.97	463.24	368.14	481.62	523.53	264.18
Merged-chr11-52076441-3	chr11	52075982	52076982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-22342.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	98.39	54.83	23.12	110.65	64.38	45.82	86.61	67.65	24.98
Merged-chr17-56507331-3	chr17	56506814	56507814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5169.0	NM_011483	20834.0	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	65.21	58.06	49.02	99.18	75.57	73.14	73.93	38.03	21.23
Merged-chr16-38712865-3	chr16	38712363	38713363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020260, exon 1 of 12)	5' UTR (NM_020260, exon 1 of 12)	172.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	40.04	27.19	42.55	46.56	21.93	39.39	128.85	126.9	102.42
Merged-chr5-124483417-3	chr5	124482923	124483923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029532, intron 1 of 1)	CpG	268.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	445.63	358.95	309.86	471.63	360.61	282.13	482.68	459.41	203.6
Merged-chr13-67683570-3	chr13	67683045	67684045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001187)	promoter-TSS (NM_001001187)	-33.0	NM_001001187	408068.0	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	41.19	55.29	37.92	41.16	56.91	45.82	124.63	91.53	22.48
Merged-chr17-33718787-3	chr17	33718288	33719288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145486)	promoter-TSS (NM_145486)	-111.0	NR_045522	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	65.21	52.07	47.17	54.65	46.65	69.13	66.54	69.42	46.22
Merged-chr19-53390705-3	chr19	53390223	53391223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356986)	promoter-TSS (NM_001356986)	-89.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	336.37	347.43	347.78	315.09	338.22	311.87	290.45	304.65	204.22
Merged-chr13-74350227-3	chr13	74349724	74350724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023281)	promoter-TSS (NM_023281)	16.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	145.87	150.22	172.97	131.57	137.62	136.64	159.48	136.63	57.46
Merged-chr13-4662563-3	chr13	4662066	4663066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53402.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	59.49	85.25	24.05	89.06	83.04	73.14	45.42	51.29	49.96
Merged-chr9-31030405-3	chr9	31029916	31030916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-228.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	218.52	190.76	132.27	200.39	164.68	184.07	183.78	155.64	134.9
Merged-chr2-34826205-3	chr2	34825717	34826717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013890)	promoter-TSS (NM_013890)	18.0	NM_001164770	30050.0	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	207.08	225.32	142.44	159.91	209.93	147.09	143.64	163.6	116.16
Merged-chr4-108579338-3	chr4	108578854	108579854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-18.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	205.94	241.45	123.94	134.94	183.8	128.61	140.47	181.29	88.06
Merged-chr2-46443305-3	chr2	46442807	46443807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	746702.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	78.37	95.38	67.52	70.17	87.7	98.87	97.17	76.49	52.46
Merged-chr1-39583398-3	chr1	39582898	39583898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-6051.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	37.18	59.44	40.7	58.03	40.59	41.8	29.57	32.28	38.72
Merged-chr3-31084141-3	chr3	31083632	31084632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	-10926.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	176.19	125.33	122.09	153.16	97.97	109.32	164.76	156.97	80.56
Merged-chr7-29008397-2	chr7	29007910	29008910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009109, exon 101 of 106)	exon (NM_009109, exon 101 of 106)	25556.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	149.31	159.43	110.99	160.58	123.16	173.62	14.79	23.43	9.99
Merged-chr9-40651577-4	chr9	40651103	40652103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	40.04	49.3	33.3	43.18	41.99	57.87	35.91	15.92	13.74
Merged-chr17-71002596-3	chr17	71002089	71003089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	-56.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	324.93	231.77	239.56	263.81	208.06	225.86	299.96	276.35	152.38
Merged-chr6-31398990-4	chr6	31398552	31399552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	224.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	433.62	330.38	250.66	402.13	299.96	305.44	305.24	256.46	189.23
Merged-chr19-40661279-3	chr19	40660783	40661783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	1513.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	167.61	172.33	128.57	203.09	174.47	141.47	201.73	247.17	144.89
Merged-chr1-180568897-3	chr1	180568371	180569371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	-20.0	NM_007415	11545.0	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	21.17	23.5	49.02	25.64	20.53	29.74	27.46	27.86	13.74
Merged-chr7-45707752-3	chr7	45707227	45708227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 2 of 3)	intron (NM_016974, intron 2 of 3)	2480.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	430.18	431.75	251.59	398.08	434.32	279.72	401.35	608.42	221.08
Merged-chr5-90898633-3	chr5	90898147	90899147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5252.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	154.45	188.0	139.67	207.81	197.33	168.8	170.05	189.69	89.93
Merged-chr18-39251070-3	chr18	39250566	39251566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	236179.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	82.95	64.97	35.15	70.85	50.85	49.83	59.15	53.5	31.85
Merged-chr1-95451086-3	chr1	95450597	95451597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137469.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	22.88	31.33	29.6	21.59	20.99	31.35	13.73	23.43	23.73
Merged-chr2-128818443-1	chr2	128817943	128818943	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028248, exon 1 of 19)	exon (NM_028248, exon 1 of 19)	140.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	320.35	276.93	249.74	307.67	299.5	297.4	266.16	242.75	191.11
Merged-chr10-80943135-3	chr10	80942645	80943645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13054.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	8.01	1.38	9.25	5.4	0.93	6.43	6.34	3.1	5.0
Merged-chr15-59866893-3	chr15	59866387	59867387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71928.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	18.31	11.98	5.55	22.94	5.13	4.02	12.67	7.07	3.75
Merged-chr7-36720221-2	chr7	36719702	36720702	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	22084.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	8.58	8.75	1.85	20.92	30.32	20.09	57.03	46.43	32.48
Merged-chr19-46502974-3	chr19	46502485	46503485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053100, exon 1 of 6)	exon (NM_053100, exon 1 of 6)	1337.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	283.74	228.55	208.11	263.81	173.54	248.37	232.36	226.83	148.64
Merged-chr4-155562175-5	chr4	155561666	155562666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138671)	promoter-TSS (NM_138671)	-215.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	215.66	205.05	112.84	159.23	141.35	139.06	146.81	156.09	124.91
Merged-chr16-37689461-3	chr16	37688969	37689969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-35101.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	5.72	9.22	7.4	5.4	4.67	9.65	2.11	3.54	13.74
Merged-chr15-73149818-3	chr15	73149299	73150299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	35148.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	165.9	164.04	114.69	122.12	85.84	74.75	149.98	153.43	74.94
Merged-chr13-23581568-3	chr13	23581068	23582068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-34.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	135.58	84.32	61.97	106.61	69.51	62.7	73.93	99.05	79.32
Merged-chr17-5189868-3	chr17	5189357	5190357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	CpG	194783.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	235.11	218.87	142.44	224.01	215.53	237.12	196.45	230.81	116.79
Merged-chr11-114989948-3	chr11	114989440	114990440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145437)	promoter-TSS (NM_145437)	-54.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	57.78	64.97	37.0	136.97	114.76	94.85	138.36	176.42	117.41
Merged-chr11-3175435-2	chr11	3174927	3175927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	MLTR31F_MM|LTR|ERVK	18036.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	67.5	108.28	112.84	93.11	125.02	249.98	1.06	1.33	99.92
Merged-chr17-57331144-3	chr17	57330625	57331625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-27561.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	16.02	16.13	12.02	23.62	10.26	32.96	28.52	23.43	19.36
Merged-chr12-59066869-3	chr12	59066367	59067367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008891)	promoter-TSS (NM_008891)	-52.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	104.11	113.81	147.07	103.91	115.23	128.61	140.47	115.41	111.17
Merged-chr9-107709953-3	chr9	107709445	107710445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 1 of 17)	CpG	530.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	8.58	1.84	0.92	9.45	6.53	7.23	19.01	1.33	3.75
Merged-chr3-152782214-3	chr3	152781732	152782732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	68132.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	62.35	76.95	39.77	71.52	90.04	74.75	69.71	90.2	42.47
Merged-chr7-13038812-3	chr7	13038315	13039315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168469)	promoter-TSS (NM_001168469)	-540.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	115.55	154.82	126.72	133.59	129.22	143.88	123.57	130.44	113.04
Merged-chrX-106603575-3	chrX	106603054	106604054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021476, exon 1 of 4)	5' UTR (NM_021476, exon 1 of 4)	125.0	NM_001281862	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	28.6	37.78	16.65	23.62	34.52	28.94	42.25	52.62	24.36
Merged-chr16-36641200-3	chr16	36640710	36641710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	24867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	162.46	118.42	102.67	145.74	115.23	114.14	136.25	132.21	84.94
Merged-chr10-76468889-3	chr10	76468373	76469373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-98.0	NM_019434	54387.0	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	52.63	61.75	57.35	72.87	76.51	62.7	81.33	73.84	48.71
Merged-chr2-58166964-2	chr2	58166468	58167468	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	2994.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	8.77	9.33	8.04	3.17	4.42	2.5
Merged-chr14-99046281-3	chr14	99045776	99046776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175245)	promoter-TSS (NM_175245)	-101.0	NR_153765	77744.0	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	109.83	88.93	97.12	124.15	117.56	110.92	156.32	138.4	65.58
Merged-chr18-54900458-3	chr18	54899959	54900959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	89721.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	101.25	146.53	60.12	145.06	97.03	100.47	148.92	193.23	101.17
Merged-chr2-163995080-3	chr2	163994581	163995581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018753)	promoter-TSS (NM_018753)	-116.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	111.55	120.73	159.09	109.3	110.56	148.7	144.7	114.08	102.42
Merged-chr17-56765182-3	chr17	56764687	56765687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360405, intron 1 of 11)	intron (NM_001360405, intron 1 of 11)	436.0	NM_144858	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	197.93	142.38	173.89	221.31	143.68	155.13	182.72	151.22	133.65
Merged-chr15-59620124-3	chr15	59619648	59620648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28506.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	23.45	19.81	9.25	15.52	18.19	25.72	14.79	13.27	3.75
Merged-chr11-120824638-3	chr11	120824155	120825155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007988)	promoter-TSS (NM_007988)	-108.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	192.21	90.77	61.97	193.64	79.31	65.91	147.87	123.81	38.72
Merged-chr1-170998416-3	chr1	170997904	170998904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20522.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	331.22	328.08	231.24	262.47	264.51	195.32	315.8	431.56	201.72
Merged-chr2-6378945-3	chr2	6378453	6379453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	26217.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	46.91	31.33	30.52	41.16	37.32	36.97	35.91	29.63	19.98
Merged-chr11-11777004-3	chr11	11776517	11777517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31945.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	40.04	35.48	23.12	14.17	19.59	53.05	27.46	22.99	23.73
Merged-chr11-86586467-3	chr11	86585959	86586959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-2301.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	232.25	208.74	125.79	276.63	236.52	208.18	228.14	374.07	137.4
Merged-chr2-93435712-1	chr2	93435212	93436212	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13705.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	18.88	15.67	9.25	21.59	12.13	6.43	14.79	7.52	1.87
Merged-chr16-91538205-3	chr16	91537719	91538719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8875.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	46.91	51.15	47.17	62.07	41.99	57.07	144.7	157.85	100.55
Merged-chr1-172334881-3	chr1	172334405	172335405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5583.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	239.69	176.48	127.64	197.02	139.02	150.31	88.72	92.41	56.21
Merged-chr16-56029371-1	chr16	56028871	56029871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356449, intron 1 of 5)	CpG	346.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	455.35	458.48	312.63	360.97	387.67	282.93	358.05	335.16	232.32
Merged-chr19-11431384-3	chr19	11430891	11431891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12167.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	21.17	32.25	12.95	22.94	16.33	21.7	25.35	21.67	33.72
Merged-chr12-85123241-3	chr12	85122739	85123739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030225, intron 9 of 14)	intron (NM_030225, intron 9 of 14)	12406.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	159.03	103.68	69.37	182.17	133.89	103.69	106.67	91.09	63.08
Merged-chr10-98792538-3	chr10	98792034	98793034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122108.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	86.38	68.66	12.02	100.53	78.84	45.01	48.58	45.54	29.35
Merged-chr8-70611983-3	chr8	70611460	70612460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3646.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	279.16	225.32	168.34	176.78	181.94	111.73	200.68	242.31	139.89
Merged-chr7-16207282-1	chr7	16206782	16207782	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14711.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	14.87	13.36	11.1	24.29	20.99	10.45	168.99	174.66	89.93
Merged-chr10-61695487-3	chr10	61695008	61696008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-6.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	114.41	111.51	103.59	119.43	104.96	93.24	123.57	118.94	79.94
Merged-chr17-26973115-3	chr17	26972619	26973619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005916)	promoter-TSS (NM_001005916)	-60.0	NM_001005916	474156.0	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	80.66	62.21	63.82	91.76	84.44	99.67	87.66	82.69	35.6
Merged-chr8-121578892-3	chr8	121578414	121579414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133765)	promoter-TSS (NM_133765)	-108.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	51.48	53.45	37.0	40.48	34.52	48.23	42.25	26.53	42.47
Merged-chr1-165763741-3	chr1	165763241	165764241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-17.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	317.49	272.32	220.14	325.21	327.96	223.45	330.59	371.42	155.51
Merged-chr17-67353108-3	chr17	67352629	67353629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1330.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	338.08	452.95	223.84	373.79	479.1	246.76	399.24	415.2	202.35
Merged-chr14-26669743-5	chr14	26669252	26670252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	94.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	111.55	147.45	114.69	111.33	108.7	114.14	156.32	111.87	116.16
Merged-chr19-3935975-3	chr19	3935482	3936482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019449, intron 2 of 10)	intron (NM_019449, intron 2 of 10)	796.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	352.96	220.25	265.46	290.13	186.14	275.7	318.97	305.98	198.6
Merged-chr7-118742590-3	chr7	118742068	118743068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	2297.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	30.89	40.09	39.77	41.83	29.39	51.44	67.6	65.44	50.59
Merged-chr9-99109796-3	chr9	99109309	99110309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30402.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	132.14	141.0	119.32	171.38	156.75	128.61	153.15	200.74	101.8
Merged-chr17-32321310-3	chr17	32320811	32321811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131218)	promoter-TSS (NR_131218)	-73.0	NR_131218	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	80.66	78.33	97.12	73.54	91.9	121.37	100.34	108.77	71.82
Merged-chr11-52396664-5	chr11	52396187	52397187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153117, intron 1 of 2)	CpG	259.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	457.07	535.43	335.76	400.78	441.78	333.57	370.72	453.66	242.94
Merged-chr10-127650262-3	chr10	127649772	127650772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 4 of 21)	MERVL_2A-int|LTR|ERVL	7286.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	20.59	18.89	25.9	16.19	12.6	9.65	15.84	19.9	26.85
Merged-chr5-138209686-2	chr5	138209186	138210186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	15372.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	33.18	26.73	36.07	41.16	41.52	46.62	0.0	2.65	0.0
Merged-chrX-48423874-3	chrX	48423377	48424377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 2 of 8)	intron (NM_019680, intron 2 of 8)	39255.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	53.77	65.43	49.95	62.07	52.72	70.73	76.05	84.9	44.34
Merged-chr11-69901006-3	chr11	69900536	69901536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316696)	promoter-TSS (NM_001316696)	-50.0	NM_027419	70419.0	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	275.73	215.19	143.37	229.4	186.6	165.58	198.56	205.17	123.03
Merged-chr14-103046927-3	chr14	103046418	103047418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008392)	promoter-TSS (NM_008392)	-94.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	13.73	15.21	0.0	11.47	7.46	6.43	45.42	19.01	6.87
Merged-chr17-5784155-3	chr17	5783650	5784650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14507.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	45.76	46.08	34.22	51.95	44.32	41.8	51.75	55.27	31.23
Merged-chr4-107178529-3	chr4	107178057	107179057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	-73.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	194.5	216.57	180.37	204.44	216.93	232.29	286.23	236.12	156.76
Merged-chr19-5786698-3	chr19	5786197	5787197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9284.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	44.05	38.71	35.15	32.39	33.12	44.21	36.97	47.31	27.48
Merged-chr15-5416222-3	chr15	5415716	5416716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80102.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	67.5	83.86	38.85	70.85	73.24	53.85	120.41	118.5	60.58
Merged-chr10-19117145-3	chr10	19116662	19117662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24587.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	34.9	25.8	13.87	33.06	14.46	16.88	14.79	19.01	14.99
Merged-chr6-115853494-3	chr6	115853012	115854012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031177)	promoter-TSS (NM_031177)	-16.0	NM_001167763	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	106.4	104.6	86.02	87.04	72.78	103.69	73.93	94.62	64.95
Merged-chr7-144939789-3	chr7	144939279	144940279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007631, exon 1 of 5)	5' UTR (NM_007631, exon 1 of 5)	146.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	95.53	64.51	61.97	97.16	62.98	64.3	117.24	127.34	56.21
Merged-chr2-71505061-2	chr2	71504562	71505562	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-24383.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	4.0	1.38	3.7	20.92	16.79	24.92	16.9	15.03	8.74
Merged-chr5-52190592-3	chr5	52190088	52191088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007839)	promoter-TSS (NM_007839)	-42.0	NM_001042620	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	244.84	264.95	203.49	242.22	243.52	180.85	245.04	144.59	126.78
Merged-chr8-82774141-3	chr8	82773627	82774627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145600)	promoter-TSS (NM_145600)	-1.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	231.68	273.25	145.22	230.08	271.97	195.32	207.01	176.42	88.06
Merged-chr3-82793825-3	chr3	82793324	82794324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	7SK|RNA|RNA	82659.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	26.89	23.04	14.8	20.92	19.13	24.11	24.29	18.13	23.73
Merged-chr8-11550731-3	chr8	11550218	11551218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024248)	promoter-TSS (NM_024248)	53.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	78.94	71.42	69.37	69.5	62.98	55.46	70.76	63.67	53.71
Merged-chr16-36071593-3	chr16	36071093	36072093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	-67.0	NM_198645	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	252.85	228.55	179.44	254.37	222.06	245.96	246.09	239.21	143.02
Merged-chr1-37998064-3	chr1	37997567	37998567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198303)	promoter-TSS (NM_198303)	57.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	127.57	122.57	170.19	109.98	102.63	129.41	138.36	135.3	133.02
Merged-chr18-53903792-3	chr18	53903248	53904248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	intron (NM_152809, intron 3 of 12)	41635.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	114.98	102.29	86.02	89.06	75.57	53.05	128.85	105.24	53.08
Merged-chr7-25776928-3	chr7	25776444	25777444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 6 of 19)	intron (NM_009465, intron 6 of 19)	11789.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	45.76	25.8	31.45	30.36	12.6	45.82	44.36	27.41	19.98
Merged-chr15-58144725-1	chr15	58144225	58145225	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	LTR10_RN|LTR|ERVK	3359.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	16.59	11.98	9.25	66.12	58.31	52.25	9.51	8.84	5.62
Merged-chr7-27232972-3	chr7	27232478	27233478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133770)	promoter-TSS (NM_133770)	-35.0	NM_133770	76889.0	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	96.68	96.76	73.07	91.09	77.44	48.23	70.76	65.0	40.59
Merged-chr11-16508256-3	chr11	16507751	16508751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011343, exon 1 of 4)	5' UTR (NM_011343, exon 1 of 4)	233.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	359.82	395.35	259.91	331.29	320.02	242.74	330.59	307.75	181.74
Merged-chr19-21283195-1	chr19	21282695	21283695	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009551, exon 6 of 6)	3' UTR (NM_009551, exon 6 of 6)	10917.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	10.87	4.15	4.62	9.45	3.73	6.43	3.17	7.96	2.5
Merged-chr15-78589080-3	chr15	78588582	78589582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7493.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	98.39	101.37	54.57	122.12	79.77	102.88	161.6	142.82	79.32
Merged-chr1-152599525-3	chr1	152599039	152600039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	25678.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	106.4	96.76	69.37	116.05	81.17	86.01	87.66	62.35	54.33
Merged-chr8-25156347-3	chr8	25155820	25156820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177089, exon 13 of 13)	3' UTR (NM_177089, exon 13 of 13)	2913.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	37.18	32.72	36.07	43.18	31.26	48.23	25.35	22.99	23.73
Merged-chr3-96057935-3	chr3	96057448	96058448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013841, exon 1 of 15)	5' UTR (NM_013841, exon 1 of 15)	507.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	81.8	84.78	74.0	81.64	85.37	102.88	72.88	85.78	58.08
Merged-chr17-67345395-3	chr17	67344931	67345931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MTD|LTR|ERVL-MaLR	9028.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	287.17	143.76	111.92	252.34	159.08	185.68	282.0	199.86	118.66
Merged-chr14-61360369-3	chr14	61359860	61360860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026598)	promoter-TSS (NM_026598)	85.0	NM_026598	68177.0	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	30.89	17.97	24.05	23.62	27.52	36.97	21.12	19.01	20.61
Merged-chr12-24593369-3	chr12	24592859	24593859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	12640.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	81.23	69.12	34.22	61.4	87.24	73.14	79.21	61.9	46.84
Merged-chr13-54694128-3	chr13	54693633	54694633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027395)	promoter-TSS (NR_027395)	-173.0	NR_027396	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	271.73	270.48	205.34	224.01	182.4	210.59	280.95	249.38	153.63
Merged-chr13-8870633-3	chr13	8870135	8871135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	intron (NM_001039388, intron 1 of 13)	409.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	129.28	162.2	138.74	134.94	153.01	159.95	193.28	183.94	64.33
Merged-chr18-65507047-1	chr18	65506547	65507547	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-73183.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	23.45	36.4	33.3	35.76	32.19	40.19	7.39	8.4	3.75
Merged-chr11-94521467-3	chr11	94520965	94521965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170671)	promoter-TSS (NM_170671)	37.0	NM_170671	104601.0	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	109.83	65.43	43.47	80.29	66.24	33.76	74.99	58.37	19.98
Merged-chr7-19266142-3	chr7	19265636	19266636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	5718.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	163.04	145.61	105.44	128.87	110.1	97.26	149.98	181.29	66.2
Merged-chr18-75367304-3	chr18	75366796	75367796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042660)	promoter-TSS (NM_001042660)	-69.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	118.99	96.76	133.19	109.3	114.76	108.51	105.62	124.69	76.82
Merged-chr1-140175674-3	chr1	140175185	140176185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	7726.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	12.01	28.11	27.75	18.22	14.46	36.97	15.84	19.9	18.74
Merged-chr5-45493339-3	chr5	45492809	45493809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-65.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	58.35	64.97	61.97	72.87	82.11	36.97	83.44	90.2	39.35
Merged-chr3-95523954-3	chr3	95523491	95524491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2795.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	68.07	44.24	50.87	31.04	21.93	42.6	66.54	57.04	49.34
Merged-chr17-46874273-3	chr17	46873762	46874762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16359.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	12.01	9.68	8.32	15.52	9.33	3.22	9.51	3.98	8.12
Merged-chr15-74989482-3	chr15	74988991	74989991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6061.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	148.16	122.57	100.82	118.08	107.3	69.93	302.07	366.56	111.79
Merged-chr4-6335794-3	chr4	6335299	6336299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-29881.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	28.6	29.49	5.55	27.66	11.66	16.08	19.01	25.2	12.49
Merged-chr9-88731910-3	chr9	88731402	88732402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007536)	promoter-TSS (NM_007536)	-52.0	NM_007536	12047.0	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	96.11	79.72	54.57	97.83	64.38	98.87	54.92	73.84	38.72
Merged-chr9-116084834-3	chr9	116084334	116085334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	90529.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	109.26	117.96	119.32	145.06	129.22	134.23	132.02	111.87	67.45
Merged-chr10-44271873-3	chr10	44271372	44272372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358596, intron 1 of 6)	L2|LINE|L2	3533.0	NM_001358596	11793.0	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	61.78	73.73	50.87	70.85	50.85	57.87	44.36	53.06	37.47
Merged-chr2-27715422-3	chr2	27714915	27715915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	4832.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	169.9	250.21	187.77	186.22	230.46	223.45	164.76	193.23	101.17
Merged-chr4-10952569-3	chr4	10952082	10953082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	55037.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	22.88	32.25	43.47	19.57	20.06	35.37	30.63	34.49	26.85
Merged-chr16-11433975-3	chr16	11433478	11434478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28330.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	42.33	26.26	25.9	40.48	43.85	50.64	23.24	31.84	28.73
Merged-chr10-121374816-3	chr10	121374311	121375311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	9721.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	306.05	302.27	235.86	356.25	304.16	249.17	306.29	432.0	148.64
Merged-chr17-35979611-3	chr17	35979118	35980118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165892)	promoter-TSS (NM_001165892)	-151.0	NM_001165892	75210.0	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	337.51	219.79	235.86	339.38	229.06	221.85	248.2	223.29	147.39
Merged-chr5-17880066-3	chr5	17879569	17880569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	8890.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	56.63	45.62	28.67	57.35	45.25	43.4	45.42	48.2	26.85
Merged-chr12-95745250-3	chr12	95744765	95745765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53039.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	34.32	50.69	27.75	44.53	39.65	33.76	49.64	49.08	30.6
Merged-chr9-101073830-3	chr9	101073348	101074348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100451)	promoter-TSS (NM_001100451)	-914.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	261.43	213.34	265.46	217.93	140.89	169.6	277.78	202.07	144.89
Merged-chr7-78913899-3	chr7	78913374	78914374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113527)	promoter-TSS (NM_001113527)	109.0	NM_020583	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	131.0	130.4	66.6	118.75	138.09	87.61	115.12	89.32	45.59
Merged-chr12-113156238-3	chr12	113155752	113156752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-169.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	63.5	46.54	45.32	73.54	38.72	61.09	61.26	41.56	41.84
Merged-chr13-9882497-3	chr13	9881985	9882985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117164.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	15.45	9.22	3.7	12.14	6.06	5.63	16.9	15.48	12.49
Merged-chr7-143021954-3	chr7	143021455	143022455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110354, exon 5 of 5)	non-coding (NR_110354, exon 5 of 5)	16296.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	167.61	119.8	91.57	141.02	85.37	102.08	125.69	153.43	120.53
Merged-chr18-44757907-3	chr18	44757414	44758414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 2 of 18)	MTD|LTR|ERVL-MaLR	54268.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	36.61	54.37	15.72	47.23	34.52	59.48	39.08	32.28	46.84
Merged-chr9-25504294-3	chr9	25503805	25504805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	22708.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	42.9	41.47	12.02	63.42	44.78	42.6	73.93	69.86	21.86
Merged-chr7-97371656-3	chr7	97371162	97372162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199035)	promoter-TSS (NM_199035)	45.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	120.7	103.22	101.74	130.22	88.64	77.16	98.23	115.85	64.33
Merged-chr18-78142847-3	chr18	78142356	78143356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171011)	promoter-TSS (NM_001171011)	-737.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	138.44	135.47	86.02	184.2	124.56	147.09	153.15	156.09	89.93
Merged-chr2-113820272-3	chr2	113819799	113820799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	8792.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	39.47	35.94	9.25	47.23	41.52	19.29	46.47	34.93	13.74
Merged-chr7-25133276-3	chr7	25132807	25133807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-847.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	24.6	19.35	31.45	12.14	14.93	31.35	21.12	21.22	23.73
Merged-chr17-44101065-3	chr17	44100565	44101565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357997, intron 3 of 3)	intron (NM_001357997, intron 3 of 3)	4743.0	NM_199016	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	85.81	71.42	37.92	37.78	27.99	38.58	91.89	87.55	61.2
Merged-chr7-4724544-3	chr7	4724038	4725038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142792, intron 1 of 5)	intron (NM_001142792, intron 1 of 5)	544.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	111.55	116.12	115.62	87.04	74.64	81.99	101.39	105.24	104.92
Merged-chr7-110060960-1	chr7	110060460	110061460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009281)	promoter-TSS (NM_009281)	-742.0	NM_009281	20841.0	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	281.45	358.95	223.84	319.14	305.56	215.42	262.99	317.48	178.61
Merged-chr11-33163186-3	chr11	33162677	33163677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252261)	promoter-TSS (NM_001252261)	29.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	68.07	71.88	57.35	76.24	94.7	93.24	66.54	62.79	43.09
Merged-chr5-143548689-3	chr5	143548185	143549185	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026050)	promoter-TSS (NM_026050)	-21.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	94.39	62.21	35.15	70.17	63.91	73.95	78.16	52.18	35.6
Merged-chr9-122950929-3	chr9	122950430	122951430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	70.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	141.3	231.31	129.49	118.08	186.6	140.66	218.63	238.77	120.53
Merged-chr19-44264392-3	chr19	44263883	44264883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29293.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	42.33	17.97	15.72	47.23	13.53	28.13	66.54	52.18	29.35
Merged-chr2-92375353-3	chr2	92374860	92375860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145122, exon 1 of 11)	5' UTR (NM_145122, exon 1 of 11)	121.0	NM_145122	18633.0	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	89.24	87.55	75.85	74.22	76.51	85.2	78.16	95.07	56.21
Merged-chr19-19144649-1	chr19	19144149	19145149	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-33453.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	4.0	5.07	0.0	0.67	5.6	9.65	5.28	0.0	3.75
Merged-chr16-22439793-3	chr16	22439292	22440292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-222.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	131.0	152.98	120.24	109.3	83.51	103.69	128.85	130.88	79.94
Merged-chr12-54986381-3	chr12	54985895	54986895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013815)	promoter-TSS (NM_013815)	-59.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	177.91	145.61	146.14	186.9	122.69	155.13	204.9	132.21	115.54
Merged-chr1-153489300-3	chr1	153488791	153489791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1631.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	86.95	69.58	58.27	72.19	58.78	81.99	74.99	89.76	58.71
Merged-chr13-95957397-3	chr13	95956919	95957919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65497.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	96.68	85.25	56.42	121.45	93.3	79.58	160.54	152.11	91.81
Merged-chr2-14073936-3	chr2	14073407	14074407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038162)	promoter-TSS (NR_038162)	27.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	193.35	222.56	151.69	185.55	206.2	162.37	239.75	220.2	106.17
Merged-chr14-25471348-3	chr14	25470871	25471871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	12186.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	136.15	123.03	69.37	143.71	106.83	81.99	84.49	77.38	51.21
Merged-chr14-33216560-3	chr14	33216108	33217108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153800)	promoter-TSS (NM_153800)	-215.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	50.91	69.58	49.02	60.05	62.51	76.36	28.52	22.55	35.6
Merged-chr9-105459152-3	chr9	105458625	105459625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359823, intron 7 of 26)	MER47B|DNA|TcMar-Tigger	36008.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	20.59	22.12	19.42	24.96	20.06	16.88	33.8	37.58	29.98
Merged-chr8-10924648-3	chr8	10924143	10925143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3814.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	65.21	48.84	33.3	75.57	41.99	61.09	42.25	41.56	22.48
Merged-chr5-72168182-3	chr5	72167641	72168641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356611)	promoter-TSS (NM_001356611)	48.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	88.1	91.7	99.89	118.75	127.82	99.67	139.42	130.88	51.21
Merged-chr12-65075552-3	chr12	65075052	65076052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178912)	promoter-TSS (NM_178912)	-54.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	96.11	109.67	79.55	105.93	107.3	117.35	139.42	160.06	64.95
Merged-chr4-139176033-3	chr4	139175539	139176539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033543, exon 3 of 3)	non-coding (NR_033543, exon 3 of 3)	4616.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	235.69	183.39	97.12	196.34	134.35	127.0	227.08	241.42	105.55
Merged-chr12-98292483-3	chr12	98291990	98292990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23855.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	44.62	48.84	29.6	86.36	64.84	57.87	42.25	49.52	28.1
Merged-chr9-92303564-2	chr9	92303065	92304065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5812.0	NM_001033184	78459.0	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	2.29	8.29	4.62	3.37	5.13	8.04	1.06	4.42	1.25
Merged-chr1-127774644-1	chr1	127774144	127775144	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045298)	promoter-TSS (NR_045298)	480.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	391.28	418.39	307.08	287.43	357.81	284.54	349.6	358.16	259.18
Merged-chr12-41275032-1	chr12	41274532	41275532	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	211025.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.15	7.83	10.17	16.87	9.33	4.02	6.34	15.48	12.49
Merged-chr4-140983551-3	chr4	140983049	140984049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3324.0	NM_029097	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	232.25	218.41	170.19	247.62	167.01	200.95	246.09	281.22	176.12
Merged-chr12-51832612-1	chr12	51832112	51833112	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3076.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	29.75	32.25	22.2	41.83	26.59	32.15	16.9	13.27	23.11
Merged-chr11-98361445-3	chr11	98360947	98361947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	3079.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	104.69	79.25	114.69	112.68	63.45	122.98	126.74	124.69	85.56
Merged-chr2-11333456-3	chr2	11332952	11333952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6037.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	64.07	53.91	29.6	93.11	103.56	40.19	52.81	75.17	21.23
Merged-chrX-94123207-3	chrX	94122688	94123688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011768, exon 1 of 8)	5' UTR (NM_011768, exon 1 of 8)	219.0	NM_011768	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	354.1	319.78	314.48	356.93	327.02	233.1	323.19	243.63	191.73
Merged-chr12-84275491-3	chr12	84274990	84275990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-9806.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	76.66	57.6	30.52	99.86	81.64	67.52	79.21	71.19	47.46
Merged-chr19-55743624-3	chr19	55743113	55744113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	1803.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	68.07	103.22	125.79	85.01	79.77	103.69	91.89	105.24	107.42
Merged-chr4-45520616-3	chr4	45520122	45521122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	10206.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	92.1	84.78	77.7	68.15	78.37	83.59	65.48	49.08	28.73
Merged-chr3-79586979-3	chr3	79586471	79587471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4366.0	NM_001356326	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	10.3	5.07	1.85	8.77	9.8	1.61	7.39	3.54	7.49
Merged-chr10-122678784-3	chr10	122678289	122679289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106182)	promoter-TSS (NR_106182)	27.0	NM_001110218	319468.0	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	339.23	271.4	194.24	406.18	299.5	188.09	262.99	238.33	126.78
Merged-chr9-113928785-3	chr9	113928288	113929288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2146.0	NM_001083319	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	102.97	104.6	61.97	113.35	91.9	91.63	87.66	87.99	58.71
Merged-chr17-53689391-3	chr17	53688895	53689895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-80.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	102.4	92.16	86.95	101.21	85.84	77.16	177.44	195.0	108.04
Merged-chr18-54668715-2	chr18	54668217	54669217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56973.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	5.15	2.3	0.0	8.77	1.87	1.61	2.11	3.98	2.5
Merged-chr17-79016002-1	chr17	79015502	79016502	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171004, intron 1 of 18)	intron (NM_001171004, intron 1 of 18)	4814.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	7.44	5.07	7.4	2.7	3.27	8.04	2.11	4.86	3.12
Merged-chr11-97142499-3	chr11	97141979	97142979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198100, intron 6 of 8)	MER94|DNA|hAT-Blackjack	3940.0	NR_106094	102466822.0		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	100.11	77.41	84.17	68.82	67.64	69.13	116.18	94.18	59.33
Merged-chrX-102157179-3	chrX	102156663	102157663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146235)	promoter-TSS (NM_146235)	-72.0	NM_146235	236930.0	Mm.31911	NM_146235	ENSMUSG00000051220	Ercc6l	BC004701|D330021P09Rik	excision repair cross-complementing rodent repair deficiency complementation group 6 like	protein-coding	53.2	56.68	36.07	51.28	52.72	40.99	41.19	70.3	30.6
Merged-chr1-176818906-3	chr1	176818412	176819412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4252.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	235.11	234.54	104.52	253.69	243.05	127.0	204.9	251.59	113.66
Merged-chr1-134405756-4	chr1	134405277	134406277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355133)	promoter-TSS (NM_001355133)	-4.0	NM_028057	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	106.4	97.69	98.05	80.97	103.56	121.37	100.34	85.34	93.05
Merged-chr5-125475812-3	chr5	125475345	125476345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030210)	promoter-TSS (NM_030210)	-28.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	15.45	15.21	13.87	21.59	24.72	28.94	38.02	26.97	13.74
Merged-chr10-57760910-3	chr10	57760393	57761393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-24030.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	94.39	101.83	52.72	123.47	100.3	93.24	77.1	97.28	39.97
Merged-chr7-30394624-3	chr7	30394196	30395196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19092.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	124.71	131.32	58.27	106.61	82.11	63.5	110.9	117.62	64.33
Merged-chr11-54438078-3	chr11	54437571	54438571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-108.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	426.75	452.49	267.31	458.81	484.24	301.42	379.17	429.79	235.45
Merged-chr18-36727764-3	chr18	36727226	36728226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009841)	promoter-TSS (NM_009841)	-911.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	174.48	270.48	100.82	201.07	256.11	165.58	214.41	270.61	118.66
Merged-chr1-65179217-3	chr1	65178726	65179726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-84.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	111.55	117.04	109.14	142.37	117.09	123.78	161.6	204.72	100.55
Merged-chr2-60298433-3	chr2	60297943	60298943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 34 of 34)	ORR1D2|LTR|ERVL-MaLR	-13959.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	12.01	7.37	3.7	10.12	11.66	14.47	16.9	7.52	13.74
Merged-chr8-22593891-3	chr8	22593406	22594406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198998)	promoter-TSS (NM_001198998)	-93.0	NM_011696	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	173.33	145.61	147.07	119.43	137.62	128.61	163.71	128.67	89.93
Merged-chr7-145110841-3	chr7	145110364	145111364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97255.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	419.89	332.69	261.76	323.86	249.12	235.51	346.43	439.96	156.13
Merged-chr14-29968327-3	chr14	29967838	29968838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019979)	promoter-TSS (NM_019979)	-42.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	413.59	398.12	255.29	383.91	341.02	318.3	363.33	395.3	190.48
Merged-chr2-71274416-3	chr2	71273940	71274940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172436, exon 18 of 18)	3' UTR (NM_172436, exon 18 of 18)	62494.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	156.74	150.22	75.85	174.08	145.55	153.52	173.21	206.05	87.43
Merged-chr19-10688732-3	chr19	10688219	10689219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	-16.0	NM_181403	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	485.1	370.01	335.76	346.13	320.02	294.99	316.86	272.37	231.7
Merged-chr19-32388562-3	chr19	32388061	32389061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-49.0	NM_144792	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	104.69	83.4	73.07	151.14	110.1	89.22	82.38	68.98	51.84
Merged-chr2-118111232-3	chr2	118110733	118111733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-31.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	23.45	20.27	20.35	23.62	18.66	11.25	13.73	14.15	18.74
Merged-chr14-33247886-3	chr14	33247391	33248391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	31068.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	147.59	191.23	139.67	175.43	193.13	151.92	96.11	105.68	96.8
Merged-chr9-7868208-3	chr9	7867713	7868713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4957.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	157.31	188.92	147.07	154.51	137.62	140.66	143.64	166.25	96.18
Merged-chr6-125333659-3	chr6	125333175	125334175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	12335.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	177.91	167.26	129.49	142.37	113.83	138.25	173.21	238.33	142.39
Merged-chr14-103719428-3	chr14	103718923	103719923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19991.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	64.07	50.69	22.2	108.63	111.96	65.91	52.81	43.77	16.24
Merged-chr14-56575567-3	chr14	56575065	56576065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145978)	promoter-TSS (NM_001145978)	-54.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	49.77	79.25	48.1	56.0	72.78	46.62	89.78	104.35	58.71
Merged-chr4-123750364-3	chr4	123749863	123750863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023423)	promoter-TSS (NM_023423)	-64.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	343.23	364.94	295.99	292.15	249.12	272.48	299.96	295.81	198.6
Merged-chr2-120404680-3	chr2	120404178	120405178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110496)	promoter-TSS (NM_001110496)	-562.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	247.13	236.38	154.47	190.27	175.87	201.75	243.98	305.1	146.76
Merged-chr5-31614043-3	chr5	31613555	31614555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025796, intron 1 of 3)	CpG	104.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	53.2	57.14	57.35	51.28	50.38	62.7	85.55	61.9	46.84
Merged-chr8-104340728-3	chr8	104340229	104341229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_024217, exon 1 of 5)	5' UTR (NM_024217, exon 1 of 5)	135.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	196.79	192.61	210.89	177.45	209.93	220.24	152.09	160.95	142.39
Merged-chr18-39241163-3	chr18	39240656	39241656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246089.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	52.63	44.7	18.5	49.93	33.12	24.92	39.08	37.14	32.48
Merged-chr14-101595817-3	chr14	101595303	101596303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	13388.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	50.34	50.23	58.27	64.77	37.32	51.44	50.7	44.22	29.35
Merged-chr17-65630760-3	chr17	65630243	65631243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	9013.0	NM_153519	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	121.28	79.72	73.07	78.94	57.38	102.88	102.45	114.96	71.82
Merged-chr17-57279136-3	chr17	57278666	57279666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011691)	promoter-TSS (NM_011691)	66.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	167.61	124.87	117.47	150.46	85.84	147.09	185.89	174.21	94.3
Merged-chr4-99163724-3	chr4	99163227	99164227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30207.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	161.32	117.5	61.05	108.63	74.64	89.22	118.29	98.6	60.58
Merged-chrX-7883958-3	chrX	7883460	7884460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_078484)	promoter-TSS (NM_078484)	-284.0	NM_001083937	22232.0	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	40.62	46.54	47.17	60.05	39.65	42.6	57.03	35.82	29.35
Merged-chr5-125340853-6	chr5	125340352	125341352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001205082, exon 1 of 12)	exon (NM_001205082, exon 1 of 12)	242.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	147.59	125.33	144.29	172.05	139.95	190.5	203.84	194.11	126.78
Merged-chr8-84903208-3	chr8	84902710	84903710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010635, exon 2 of 3)	exon (NM_010635, exon 2 of 3)	1282.0	NM_010635	16596.0	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	40.04	33.64	42.55	40.48	46.18	41.8	54.92	41.56	25.61
Merged-chr11-98342768-3	chr11	98342268	98343268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5638.0	NM_144828	19049.0	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	9.72	7.83	5.55	4.05	6.06	3.22	6.34	3.1	7.49
Merged-chr11-75533142-3	chr11	75532637	75533637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	1025.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	116.13	105.98	116.54	130.9	90.97	127.0	110.9	150.78	70.57
Merged-chr2-132578210-3	chr2	132577715	132578715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291052)	promoter-TSS (NM_001291052)	33.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	331.22	239.15	197.94	342.76	185.2	181.66	280.95	207.82	116.79
Merged-chr6-3487568-3	chr6	3487056	3488056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6942.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	25.74	39.17	18.5	12.82	11.66	22.51	12.67	9.73	21.23
Merged-chr7-28809149-3	chr7	28808662	28809662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1728.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	613.24	591.65	448.6	526.95	485.17	417.17	505.91	559.34	384.08
Merged-chr7-99625931-3	chr7	99625425	99626425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195529, exon 1 of 1)	exon (NM_001195529, exon 1 of 1)	1178.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	5.72	1.84	0.92	4.72	2.8	1.61	2.11	0.0	0.0
Merged-chr14-74937077-3	chr14	74936565	74937565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	MER44D|DNA|TcMar-Tigger	10812.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	64.64	39.17	64.75	51.95	32.66	20.09	52.81	37.14	26.85
Merged-chr19-40637876-3	chr19	40637356	40638356	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21914.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	187.06	173.72	134.12	193.64	153.48	168.8	155.26	172.45	88.68
Merged-chr14-10439553-3	chr14	10439058	10440058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	13900.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	17.16	26.73	22.2	13.49	14.46	11.25	14.79	12.82	9.99
Merged-chr8-120441936-1	chr8	120441436	120442436	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46930.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	6.29	8.29	6.47	8.77	2.8	9.65	11.62	5.31	2.5
Merged-chr1-191351266-3	chr1	191350772	191351772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144880)	TTS (NM_144880)	25307.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	29.75	48.84	47.17	19.57	30.79	36.97	32.74	47.31	38.1
Merged-chr5-135909685-3	chr5	135909187	135910187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21768.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	157.89	100.91	54.57	206.46	184.74	168.8	141.53	131.77	52.46
Merged-chr8-121877457-1	chr8	121876957	121877957	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30229.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	2.29	0.46	5.55	2.7	1.87	0.0	11.62	2.65	11.87
Merged-chr1-118311347-3	chr1	118310855	118311855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	-9.0	NM_011650	22099.0	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	125.28	124.41	93.42	138.99	122.69	124.59	141.53	123.81	68.07
Merged-chr8-72492776-3	chr8	72492267	72493267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-153.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	192.21	168.65	131.34	129.55	111.5	96.45	172.16	130.88	58.71
Merged-chr9-71951424-3	chr9	71950923	71951923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-55327.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	109.83	127.18	71.22	118.08	107.3	90.83	142.59	168.91	76.19
Merged-chr18-34931476-1	chr18	34930976	34931976	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	CpG	527.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	630.98	704.54	517.97	600.5	571.94	454.94	548.16	680.5	421.56
Merged-chr4-136140483-3	chr4	136140010	136141010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3312.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	323.78	230.39	152.62	278.66	226.72	151.92	245.04	268.4	116.79
Merged-chr5-41845222-3	chr5	41844667	41845667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310601)	promoter-TSS (NM_001310601)	-852.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	46.91	58.52	82.32	70.17	69.51	77.97	90.83	106.12	56.83
Merged-chr10-94521924-3	chr10	94521417	94522417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	7060.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	88.67	44.7	32.37	73.54	37.79	21.7	57.03	47.31	10.62
Merged-chr7-3941129-3	chr7	3940645	3941645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25644.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	26.89	25.8	18.5	14.84	18.19	12.86	11.62	8.84	12.49
Merged-chr17-10725071-3	chr17	10724573	10725573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115118.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	10.87	12.44	4.62	35.76	12.6	21.7	16.9	6.63	8.74
Merged-chr3-59228910-3	chr3	59228413	59229413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 16 of 43)	intron (NM_177855, intron 16 of 43)	-18031.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	96.68	90.31	61.05	91.09	67.18	77.16	85.55	77.38	76.82
Merged-chr8-79415080-3	chr8	79414578	79415578	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	14.87	12.9	10.17	21.59	17.26	16.88	17.96	8.4	9.99
Merged-chr13-23369226-3	chr13	23368700	23369700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172586)	promoter-TSS (NM_172586)	8.0	NM_001286156	218100.0	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	91.53	130.86	81.4	72.87	120.36	143.88	119.35	125.58	78.07
Merged-chr2-170221156-3	chr2	170220656	170221656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78481.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	41.76	32.25	33.3	55.33	22.39	33.76	84.49	67.21	34.35
Merged-chr2-101777000-1	chr2	101776500	101777500	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	MIRb|SINE|MIR	20707.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.72	5.99	7.4	1.35	4.2	1.61	33.8	16.8	16.86
Merged-chr8-45333247-3	chr8	45332740	45333740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-44.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	367.83	395.81	251.59	321.84	372.74	316.69	383.4	431.11	231.08
Merged-chr14-55540284-3	chr14	55539779	55540779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028994)	promoter-TSS (NM_028994)	13.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	40.62	35.02	24.97	33.74	36.85	36.17	38.02	40.24	25.61
Merged-chr4-139430368-3	chr4	139429892	139430892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160319, intron 48 of 105)	intron (NM_001160319, intron 48 of 105)	49733.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	5.72	4.15	4.62	12.14	3.73	4.82	8.45	7.07	5.0
Merged-chr10-78144324-3	chr10	78143835	78144835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25433.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	24.6	28.57	23.12	30.36	15.39	12.06	40.14	25.65	7.49
Merged-chr11-83572426-3	chr11	83571930	83572930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011338)	TTS (NM_011338)	6206.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	129.86	114.27	64.75	91.76	65.78	86.81	88.72	71.63	57.46
Merged-chr1-97673046-3	chr1	97672539	97673539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11021.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	16.02	30.87	9.25	39.13	26.59	21.7	19.01	11.94	13.74
Merged-chr9-3403811-4	chr9	3403335	3404335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-250.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	221.38	325.77	153.54	170.7	238.39	154.33	297.84	287.41	131.15
Merged-chr10-58323406-3	chr10	58322904	58323904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359115)	promoter-TSS (NM_001359115)	-143.0	NM_001359115	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	89.24	73.26	84.17	85.01	60.18	57.87	74.99	56.16	54.96
Merged-chr1-119504320-3	chr1	119503835	119504835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	447.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	145.3	134.09	161.87	119.43	124.56	174.42	127.8	149.45	114.91
Merged-chr8-126833658-3	chr8	126833129	126834129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15391.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	340.37	270.02	239.56	333.99	263.11	330.36	327.42	319.69	208.59
Merged-chr15-91192046-3	chr15	91191518	91192518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358967)	promoter-TSS (NM_001358967)	-11.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	81.8	76.03	79.55	79.62	69.04	75.56	118.29	116.73	55.58
Merged-chr16-95839698-3	chr16	95839184	95840184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	MLT1A1|LTR|ERVL-MaLR	59029.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	24.6	9.68	5.55	33.74	24.72	12.86	12.67	21.67	5.0
Merged-chr4-107285641-3	chr4	107285142	107286142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21526.0	NM_007860	13370.0	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	26.31	27.65	15.72	31.04	21.46	12.86	29.57	16.8	17.49
Merged-chr10-95279668-3	chr10	95279158	95280158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	44051.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	73.79	78.79	70.3	74.22	42.45	67.52	78.16	70.75	63.08
Merged-chr1-136346091-3	chr1	136345580	136346580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347110)	promoter-TSS (NM_001347110)	24.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	69.79	50.23	66.6	99.18	66.24	75.56	79.21	52.18	50.59
Merged-chr19-44474320-3	chr19	44473819	44474819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19153.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	6.86	5.53	3.7	8.1	4.2	4.02	14.79	4.86	3.75
Merged-chr8-46617271-3	chr8	46616754	46617754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009810)	promoter-TSS (NM_009810)	-27.0	NR_151680	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	52.06	48.38	61.97	61.4	59.71	86.81	81.33	65.88	29.98
Merged-chr15-40956063-3	chr15	40955557	40956557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-217644.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	21.74	18.43	20.35	43.18	33.12	24.92	16.9	30.07	21.86
Merged-chrX-9462916-3	chrX	9462404	9463404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	6420.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	62.93	34.56	39.77	43.18	20.06	32.15	32.74	37.58	34.35
Merged-chr16-36041158-3	chr16	36040658	36041658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027113)	promoter-TSS (NM_027113)	-32.0	NM_027113	69544.0	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	83.52	115.2	65.67	73.54	92.84	102.08	92.94	105.68	67.45
Merged-chr3-36613427-3	chr3	36612908	36613908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027810)	promoter-TSS (NM_027810)	-19.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	25.74	38.71	16.65	37.78	26.59	20.9	34.85	19.01	8.12
Merged-chr5-110839866-3	chr5	110839357	110840357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016681)	promoter-TSS (NM_016681)	-80.0	NR_153348	100900.0	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	117.27	117.04	84.17	159.91	179.61	151.92	239.75	192.78	99.92
Merged-chr4-66852192-3	chr4	66851694	66852694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24643.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	33.18	29.95	15.72	33.06	35.92	53.05	7.39	12.82	11.24
Merged-chr12-26398738-1	chr12	26398238	26399238	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	16272.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	3.43	3.69	0.0	4.72	4.2	19.29	4.22	2.21	5.0
Merged-chr8-124897876-3	chr8	124897377	124898377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-9.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	86.38	75.57	93.42	104.58	91.44	103.69	98.23	87.99	50.59
Merged-chr4-133967325-3	chr4	133966832	133967832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016957, intron 1 of 5)	CpG	659.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	167.61	152.06	150.77	165.98	163.28	122.98	143.64	121.15	111.17
Merged-chr7-19077942-3	chr7	19077452	19078452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1752.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	33.18	19.81	15.72	14.84	9.33	24.11	119.35	104.79	60.58
Merged-chr5-112276528-3	chr5	112276039	112277039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001326590)	promoter-TSS (NM_001326590)	-152.0	NM_001326590	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	229.97	181.55	174.82	192.29	142.29	134.23	213.35	173.33	120.53
Merged-chr12-80946164-3	chr12	80945677	80946677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045057)	promoter-TSS (NR_045057)	678.0	NM_001347415	20384.0	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	544.6	523.45	411.6	472.3	458.11	335.98	370.72	377.61	272.92
Merged-chr13-55190411-3	chr13	55189911	55190911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19371.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	83.52	88.47	80.47	109.3	92.37	74.75	127.8	126.02	64.33
Merged-chr3-100436859-3	chr3	100436362	100437362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	10457.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	18.88	11.98	11.1	16.87	7.46	4.82	26.4	21.22	9.37
Merged-chr2-165875015-3	chr2	165874506	165875506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	3431.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	78.37	58.06	53.65	83.66	69.51	72.34	76.05	85.34	58.71
Merged-chr1-75192707-3	chr1	75192177	75193177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001288612)	promoter-TSS (NM_001288612)	517.0	NR_051998	52231.0	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	87.52	123.03	74.92	197.02	202.46	179.24	192.23	269.72	136.15
Merged-chr12-81595102-3	chr12	81594598	81595598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347386)	promoter-TSS (NM_001347386)	-90.0	NM_001347384	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	62.93	84.78	85.1	61.4	70.91	53.85	87.66	84.9	56.21
Merged-chr1-191269711-3	chr1	191269227	191270227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45273.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	229.97	146.53	94.35	271.91	202.46	178.44	142.59	136.63	67.45
Merged-chr13-97584360-3	chr13	97583859	97584859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_046157)	TTS (NR_046157)	24359.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	21.17	29.95	27.75	18.89	10.26	20.9	33.8	42.01	20.61
Merged-chr10-77551130-3	chr10	77550630	77551630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 8 of 15)	intron (NM_008404, intron 8 of 15)	20782.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	57.21	91.24	85.1	64.1	57.38	76.36	45.42	60.58	46.22
Merged-chr5-29948321-3	chr5	29947840	29948840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64774.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	100.11	90.31	61.97	87.71	58.78	58.68	83.44	81.8	51.21
Merged-chr7-19327346-3	chr7	19326896	19327896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17351.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	100.68	94.0	48.1	112.0	78.37	44.21	110.9	109.66	41.22
Merged-chr13-58067949-3	chr13	58067453	58068453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	34475.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	129.86	158.51	89.72	141.02	161.41	148.7	147.87	156.97	96.18
Merged-chr12-91710712-3	chr12	91710210	91711210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	L1Md_A|LINE|L1	75726.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	54.92	52.99	59.2	64.1	56.45	66.71	71.82	63.23	32.48
Merged-chr3-99141290-3	chr3	99140769	99141769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027462, intron 1 of 5)	CpG	179.0	NM_027462	70560.0	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	173.33	211.96	141.52	172.73	205.26	136.64	234.47	183.06	113.04
Merged-chr9-59617214-3	chr9	59616721	59617721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038075)	promoter-TSS (NR_038075)	-63.0	NR_038075	67287.0	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	35.47	33.18	29.6	45.21	38.25	64.3	54.92	48.64	39.97
Merged-chr12-69893154-3	chr12	69892652	69893652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201519)	promoter-TSS (NM_201519)	11.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	92.1	65.43	61.97	94.46	65.78	61.89	69.71	46.43	41.22
Merged-chr3-95217271-3	chr3	95216775	95217775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_108026)	promoter-TSS (NR_108026)	-182.0	NR_108026	100504029.0	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	164.18	151.14	132.27	144.39	139.02	142.27	152.09	160.51	103.05
Merged-chr3-87919515-3	chr3	87918997	87919997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026591)	promoter-TSS (NM_026591)	-47.0	NM_026591	67707.0	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	57.21	48.84	33.3	39.81	25.66	46.62	74.99	45.54	39.35
Merged-chr9-121719516-1	chr9	121719016	121720016	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010918, exon 2 of 17)	exon (NM_010918, exon 2 of 17)	335.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	465.08	282.92	263.61	419.0	263.58	226.67	316.86	203.4	151.76
Merged-chr5-28317008-3	chr5	28316519	28317519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028234)	promoter-TSS (NM_028234)	-170.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	284.31	271.4	221.06	243.57	242.12	288.56	331.64	209.15	223.58
Merged-chr7-142394420-3	chr7	142393912	142394912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	141.3	153.44	133.19	145.06	104.5	118.96	135.19	142.82	104.92
Merged-chr8-3631134-3	chr8	3630637	3631637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011503)	promoter-TSS (NM_011503)	28.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	141.3	154.36	122.09	171.38	217.86	144.68	186.94	216.22	93.05
Merged-chr2-122145969-3	chr2	122145464	122146464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-1723.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	178.48	223.48	93.42	192.29	109.63	110.12	173.21	191.46	96.18
Merged-chr13-37526336-3	chr13	37525832	37526832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180987.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	48.05	33.18	24.05	54.65	40.12	32.15	58.09	33.16	24.98
Merged-chr15-25358124-2	chr15	25357621	25358621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	55643.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	13.16	18.43	9.25	62.75	62.98	39.39	143.64	144.59	53.71
Merged-chr11-83789421-3	chr11	83788919	83789919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35782.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	13.73	12.44	9.25	20.24	9.33	4.82	23.24	7.07	8.74
Merged-chr2-6721694-3	chr2	6721197	6722197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-35.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	235.69	276.47	165.57	187.57	220.19	173.62	199.62	276.35	163.0
Merged-chr13-52024927-3	chr13	52024400	52025400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71841.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	14.3	20.74	51.8	20.92	16.79	29.74	26.4	15.48	9.99
Merged-chr11-116087050-3	chr11	116086552	116087552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347642)	promoter-TSS (NM_001347642)	-57.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	338.08	289.83	196.09	367.05	253.31	155.93	220.74	278.57	134.27
Merged-chr3-20155006-3	chr3	20154499	20155499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013755, exon 1 of 7)	exon (NM_013755, exon 1 of 7)	117.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	50.34	47.92	16.65	63.42	66.24	54.66	51.75	28.74	23.73
Merged-chr2-154676831-1	chr2	154676331	154677331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	19805.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	121.85	157.13	129.49	71.52	81.17	70.73	77.1	85.34	68.7
Merged-chr3-97658220-3	chr3	97657725	97658725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182997)	promoter-TSS (NM_182997)	13.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	105.83	92.16	72.15	105.26	83.97	122.18	100.34	61.9	56.83
Merged-chr9-115485470-1	chr9	115484970	115485970	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	103651.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	3.43	4.15	0.0	2.02	2.33	0.8	24.29	25.65	18.11
Merged-chr7-110773339-3	chr7	110772856	110773856	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009667, intron 1 of 14)	intron (NM_009667, intron 1 of 14)	752.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	62.35	47.0	34.22	87.04	50.85	95.65	73.93	85.78	60.58
Merged-chr4-135300516-3	chr4	135300083	135301083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27823.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	106.97	57.14	77.7	8.1	4.2	6.43	14.79	12.38	7.49
Merged-chr8-126566155-3	chr8	126565657	126566657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27279.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	153.31	102.29	63.82	159.23	123.62	79.58	90.83	68.09	28.73
Merged-chr17-27615582-3	chr17	27615065	27616065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	L2|LINE|L2	7399.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	56.63	23.5	24.05	68.15	35.92	35.37	60.2	49.08	21.86
Merged-chr3-55354205-3	chr3	55353702	55354702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-107526.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	170.47	209.2	141.52	191.62	212.26	114.94	239.75	302.44	119.28
Merged-chr9-83555804-3	chr9	83555316	83556316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	7478.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	26.89	26.26	14.8	37.11	23.79	14.47	83.44	96.83	28.73
Merged-chr8-46732749-3	chr8	46732231	46733231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	6784.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	50.34	78.33	49.02	51.28	46.18	55.46	72.88	101.7	56.83
Merged-chr19-37435908-3	chr19	37435426	37436426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1085.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	85.24	87.09	110.99	62.07	73.71	109.32	92.94	95.07	68.7
Merged-chr4-148041099-3	chr4	148040603	148041603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161798)	promoter-TSS (NM_001161798)	-86.0	NR_027809	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	56.63	49.3	56.42	50.6	43.85	70.73	79.21	80.92	73.69
Merged-chr8-11635154-3	chr8	11634650	11635650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030781)	promoter-TSS (NR_030781)	-114.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	46.91	44.7	56.42	62.07	77.91	81.99	65.48	52.18	37.47
Merged-chr7-132735391-3	chr7	132734887	132735887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	41529.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	17.73	11.52	18.5	26.99	14.93	32.15	13.73	14.59	11.87
Merged-chr1-92658773-1	chr1	92658273	92659273	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9932.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	10.3	13.82	12.95	24.96	10.26	24.92	9.51	6.63	14.99
Merged-chr17-35353184-2	chr17	35352684	35353684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	10851.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	4.0	5.53	1.85	3.37	7.0	2.41	2.11	3.1	1.25
Merged-chr18-35553368-3	chr18	35552870	35553870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038073)	promoter-TSS (NR_038073)	-40.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	16.59	24.88	14.8	33.06	29.39	12.86	33.8	23.43	5.0
Merged-chr16-33933483-3	chr16	33932966	33933966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	33572.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	105.83	117.04	90.65	110.65	131.09	130.21	143.64	156.53	94.93
Merged-chr7-29908596-3	chr7	29908002	29909002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243908)	promoter-TSS (NM_001243908)	-15.0	NM_001243908	73729.0	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	129.86	118.42	112.84	132.24	97.5	128.61	145.75	117.17	69.95
Merged-chr1-128359727-3	chr1	128359219	128360219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313695)	promoter-TSS (NM_001313695)	-14.0	NM_008567	17219.0	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	12.01	22.12	20.35	15.52	24.26	17.68	26.4	22.55	11.24
Merged-chr19-12473476-3	chr19	12472947	12473947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	12668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	40.04	49.76	29.6	53.98	48.05	67.52	54.92	54.39	43.72
Merged-chr4-40279398-3	chr4	40278874	40279874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033305)	promoter-TSS (NM_001033305)	47.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	124.71	116.12	93.42	124.15	97.03	133.43	127.8	119.39	96.18
Merged-chr1-172482110-3	chr1	172481603	172482603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-110.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	14.3	5.53	11.1	16.19	8.4	10.45	16.9	11.94	9.99
Merged-chr4-58586163-3	chr4	58585663	58586663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32672.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	48.05	38.25	37.0	40.48	41.05	17.68	36.97	33.16	27.48
Merged-chr5-151190264-3	chr5	151189772	151190772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163493)	promoter-TSS (NM_001163493)	-79.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	10.3	13.82	12.95	8.77	18.19	19.29	31.69	37.14	14.99
Merged-chr1-34389770-3	chr1	34389274	34390274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43425.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	50.91	62.21	63.82	52.63	33.59	38.58	58.09	75.17	39.97
Merged-chr7-127478910-3	chr7	127478401	127479401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6320.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	334.65	319.32	278.41	230.08	210.86	233.1	260.88	295.81	202.35
Merged-chr7-73618461-3	chr7	73617931	73618931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-60036.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	384.99	391.21	267.31	423.05	486.1	279.72	362.27	448.8	181.74
Merged-chr8-70302558-3	chr8	70302049	70303049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021538)	promoter-TSS (NM_021538)	-97.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	168.18	202.28	160.94	153.16	160.01	172.01	218.63	205.17	98.68
Merged-chr8-25440453-1	chr8	25439953	25440953	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78306.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	5.72	4.15	5.55	2.7	7.0	6.43	4.22	2.21	6.25
Merged-chr16-91406281-3	chr16	91405764	91406764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008349)	promoter-TSS (NM_008349)	29.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	425.04	324.39	280.26	482.42	311.16	298.21	428.81	416.96	229.83
Merged-chr12-80130848-3	chr12	80130354	80131354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	1990.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	133.86	139.62	122.09	118.08	77.44	145.49	124.63	208.7	119.91
Merged-chr15-86186155-3	chr15	86185638	86186638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	3.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	226.53	176.02	163.72	231.43	169.34	217.83	202.79	165.81	151.14
Merged-chr2-34406833-3	chr2	34406339	34407339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177345)	promoter-TSS (NM_177345)	-12.0	NM_177345	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	83.52	69.12	47.17	56.68	57.38	41.8	65.48	65.0	30.6
Merged-chr17-88065383-3	chr17	88064879	88065879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081034)	promoter-TSS (NM_001081034)	-88.0	NM_001081034	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	356.39	257.12	397.73	313.74	210.4	300.62	332.7	162.72	214.84
Merged-chr8-27023126-3	chr8	27022617	27023617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-682.0	NM_153592	244373.0	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	336.94	382.45	261.76	376.49	349.41	251.59	390.79	477.1	201.72
Merged-chr6-65594395-3	chr6	65593893	65594893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 2 of 7)	intron (NM_001001495, intron 2 of 7)	3995.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	13.16	11.06	7.4	7.42	7.0	0.0	3.17	5.75	1.25
Merged-chr5-140739990-3	chr5	140739497	140740497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	15870.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	112.69	43.77	49.02	72.19	57.85	67.52	43.3	51.29	20.61
Merged-chr16-23127812-3	chr16	23127296	23128296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145480)	promoter-TSS (NM_145480)	-66.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	276.87	304.12	187.77	214.56	223.46	191.3	275.66	256.46	175.49
Merged-chr5-100526362-3	chr5	100525876	100526876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359204, intron 2 of 10)	intron (NM_001359204, intron 2 of 10)	8067.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	82.95	112.43	69.37	98.51	83.04	63.5	83.44	94.18	56.83
Merged-chr3-96759881-3	chr3	96759374	96760374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	intron (NM_026406, intron 3 of 8)	32263.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	42.33	46.54	22.2	64.1	48.52	45.01	69.71	91.09	35.6
Merged-chr12-85705559-4	chr12	85705015	85706015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18795.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	286.6	313.33	253.44	334.66	264.51	254.0	331.64	309.52	158.01
Merged-chr10-76237950-3	chr10	76237454	76238454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126571)	promoter-TSS (NR_126571)	-89.0	NM_133182	15468.0	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	54.35	56.68	38.85	82.99	73.71	53.05	62.31	66.33	32.48
Merged-chr8-36249516-3	chr8	36249018	36250018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081150)	promoter-TSS (NM_001081150)	-2.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	291.75	217.03	159.09	238.85	174.94	139.86	251.37	161.39	131.15
Merged-chr8-46811490-3	chr8	46810984	46811984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	71739.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	32.04	24.42	24.05	37.78	47.58	67.52	41.19	30.07	25.61
Merged-chr3-32397010-3	chr3	32396529	32397529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-31364.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	208.23	206.43	130.42	161.26	137.62	140.66	186.94	140.61	100.55
Merged-chr5-21701550-3	chr5	21701101	21702101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359963)	promoter-TSS (NM_001359963)	21.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	144.73	118.42	109.14	159.23	133.89	142.27	158.43	129.55	62.45
Merged-chr3-69126588-2	chr3	69126081	69127081	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	CpG	511.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	278.02	282.0	234.94	314.42	298.1	224.26	306.29	242.31	178.61
Merged-chr17-71288310-3	chr17	71287815	71288815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	22696.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	221.38	175.56	98.97	277.31	205.73	146.29	121.46	118.5	35.6
Merged-chr2-32608763-3	chr2	32608262	32609262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289549, intron 2 of 6)	intron (NM_001289549, intron 2 of 6)	1777.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	189.92	99.07	66.6	151.81	65.78	71.54	111.96	102.14	53.08
Merged-chr9-56417663-3	chr9	56417156	56418156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	394.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	197.93	149.29	157.24	143.04	99.83	93.24	142.59	102.14	93.05
Merged-chr4-101357519-3	chr4	101357035	101358035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-1287.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	217.95	189.84	126.72	186.9	190.34	113.33	240.81	324.11	121.78
Merged-chr11-61793587-3	chr11	61793084	61794084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-31496.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	88.67	122.11	63.82	88.39	79.77	65.11	76.05	98.6	67.45
Merged-chr1-60580053-3	chr1	60579559	60580559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-13294.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	37.76	42.39	45.32	38.46	27.52	47.42	40.14	42.45	38.72
Merged-chr1-87849502-3	chr1	87848977	87849977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3810.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	48.62	51.15	30.52	118.75	89.57	62.7	52.81	49.08	29.98
Merged-chr5-8805997-3	chr5	8805481	8806481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011075, intron 3 of 27)	intron (NM_011075, intron 3 of 27)	-7458.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	17.16	24.42	12.02	21.59	20.53	23.31	12.67	7.96	9.37
Merged-chr13-45444874-3	chr13	45444345	45445345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55103.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	62.35	51.15	16.65	88.39	46.18	34.56	34.85	20.34	10.62
Merged-chr4-74251842-3	chr4	74251341	74252341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144787)	promoter-TSS (NM_144787)	-38.0	NM_144787	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	203.08	191.69	94.35	205.11	250.05	182.46	207.01	191.46	91.18
Merged-chr10-68105413-3	chr10	68104907	68105907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 8 of 9)	(T)n|Simple_repeat|Simple_repeat	125837.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	189.92	133.63	63.82	187.57	125.49	124.59	111.96	94.18	68.07
Merged-chr12-112895180-3	chr12	112894668	112895668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25373.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	140.73	119.8	106.37	92.44	60.18	74.75	52.81	44.66	24.36
Merged-chr3-32736916-3	chr3	32736407	32737407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	-152.0	NM_029017	74600.0	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	94.96	122.57	122.09	88.39	92.37	104.49	109.84	95.51	66.2
Merged-chr3-58516866-3	chr3	58516371	58517371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8950.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	84.09	69.58	31.45	68.15	67.18	46.62	65.48	55.27	49.34
Merged-chr17-34605788-3	chr17	34605299	34606299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-62.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	184.77	158.97	156.32	157.88	104.5	136.64	168.99	168.47	100.55
Merged-chr2-48694738-3	chr2	48694239	48695239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119370.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	15.45	12.44	7.4	8.77	4.2	1.61	9.51	5.75	3.75
Merged-chr8-94179727-1	chr8	94179227	94180227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013602, intron 1 of 2)	intron (NM_013602, intron 1 of 2)	638.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	332.94	330.84	204.41	362.32	393.27	305.44	269.33	387.78	216.09
Merged-chr13-21180128-5	chr13	21179621	21180621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009054, exon 1 of 8)	5' UTR (NM_009054, exon 1 of 8)	190.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	85.24	109.67	95.27	96.48	97.03	139.06	98.23	98.16	100.55
Merged-chrX-93756064-3	chrX	93755563	93756563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76032.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	74.94	132.25	88.8	103.23	125.02	81.99	85.55	122.04	59.33
Merged-chr1-171184511-3	chr1	171184017	171185017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025557, intron 1 of 2)	URR1B|DNA|hAT-Charlie	11751.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	25.74	10.6	8.32	28.34	12.6	22.51	41.19	32.72	11.24
Merged-chr9-89705055-3	chr9	89704577	89705577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025360)	promoter-TSS (NM_025360)	-34.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	40.62	32.72	28.67	41.83	35.92	36.17	36.97	33.6	18.74
Merged-chr2-98662637-3	chr2	98662138	98663138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	1194981.0	NM_178725	241568.0	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	2112.02	6257.91	1814.76	2166.52	6465.34	1618.83	3968.09	3973.31	2164.61
Merged-chr16-32099766-3	chr16	32099264	32100264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025892)	promoter-TSS (NM_025892)	-37.0	NM_024464	72084.0	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	65.21	47.0	57.35	74.22	46.18	65.91	51.75	45.99	40.59
Merged-chr11-69410457-3	chr11	69409959	69410959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 1 of 22)	CpG	3216.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	679.03	540.96	410.68	618.72	531.35	409.93	493.24	606.65	307.89
Merged-chr10-118103446-3	chr10	118102935	118103935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38352.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	169.33	131.32	84.17	163.28	142.29	101.28	116.18	126.02	76.82
Merged-chr8-105348016-3	chr8	105347514	105348514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081332)	promoter-TSS (NM_001081332)	-44.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	154.45	111.51	92.5	127.52	97.97	106.1	133.08	131.77	72.45
Merged-chr4-44168325-3	chr4	44167815	44168815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175201)	promoter-TSS (NM_175201)	-32.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	54.92	67.27	43.47	51.28	43.85	61.09	69.71	57.92	43.72
Merged-chr12-54369401-3	chr12	54368894	54369894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21924.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	2.29	4.15	9.25	4.05	1.4	0.0	1.06	6.63	6.25
Merged-chr11-29308319-3	chr11	29307815	29308815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-61043.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	10.87	11.52	23.12	10.12	5.13	16.08	5.28	4.42	6.87
Merged-chr10-61383624-5	chr10	61383135	61384135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013753)	promoter-TSS (NM_013753)	-112.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	36.04	25.8	49.02	41.16	25.19	27.33	29.57	28.3	36.22
Merged-chr16-11066255-3	chr16	11065754	11066754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009223)	promoter-TSS (NM_009223)	-44.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	93.82	76.03	59.2	109.98	87.7	73.95	87.66	70.75	34.35
Merged-chr7-100121558-3	chr7	100121042	100122042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133692)	promoter-TSS (NM_133692)	-42.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	210.52	174.18	160.02	222.66	165.61	157.54	151.03	163.6	98.68
Merged-chr11-55208446-3	chr11	55207956	55208956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	4116.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	61.78	104.6	93.42	77.59	100.3	92.44	69.71	107.0	70.57
Merged-chr4-71291988-3	chr4	71291490	71292490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-757062.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	35.47	41.47	28.67	51.95	43.85	43.4	65.48	66.33	41.22
Merged-chr4-83309074-3	chr4	83308563	83309563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	MTC|LTR|ERVL-MaLR	15126.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	86.38	85.25	62.9	111.33	113.83	90.02	97.17	113.19	61.2
Merged-chr11-106674821-3	chr11	106674313	106675313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	40468.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	396.43	327.16	212.74	337.36	226.26	233.1	242.92	277.24	167.37
Merged-chr18-12941813-3	chr18	12941338	12942338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207530)	promoter-TSS (NM_207530)	3.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	120.13	141.92	90.65	149.11	200.6	150.31	167.93	148.57	74.32
Merged-chr1-74391511-3	chr1	74391005	74392005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-104.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	217.38	174.18	147.99	192.29	116.63	133.43	183.78	131.32	90.56
Merged-chr15-34580084-3	chr15	34579568	34580568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145469, intron 8 of 10)	intron (NM_145469, intron 8 of 10)	84757.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	13.16	18.89	14.8	22.27	24.72	28.94	17.96	10.61	16.24
Merged-chr3-5575928-1	chr3	5575428	5576428	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008994, intron 1 of 5)	CpG	320.0	NM_001163301	19302.0	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	244.27	286.61	252.51	234.13	242.12	214.61	276.72	265.3	179.24
Merged-chr18-38367413-3	chr18	38366916	38367916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28423.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	23.45	14.28	10.17	36.43	19.13	26.53	16.9	17.69	6.87
Merged-chr2-167062704-3	chr2	167062186	167063186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138563)	promoter-TSS (NR_138563)	-248.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	238.55	126.25	170.19	253.69	76.97	138.25	261.93	155.2	138.65
Merged-chr14-55743929-3	chr14	55743421	55744421	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026819, intron 2 of 8)	intron (NM_026819, intron 2 of 8)	1763.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	58.35	64.97	56.42	49.25	40.12	56.27	65.48	63.23	39.97
Merged-chr17-56304200-3	chr17	56303709	56304709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-104.0	NM_001111078	18140.0	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	30.89	25.8	10.17	34.41	16.79	32.15	27.46	24.76	13.12
Merged-chr18-12741292-3	chr18	12740792	12741792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-63.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	139.58	158.97	162.79	151.14	146.48	169.6	196.45	229.48	144.89
Merged-chr6-116669273-3	chr6	116668762	116669762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	MLTR14|LTR|ERV1	4574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	215.09	128.1	135.04	201.74	82.11	135.04	182.72	196.76	109.29
Merged-chr8-18899273-3	chr8	18898753	18899753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51618.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	8.01	13.82	7.4	10.8	14.0	16.08	6.34	7.52	9.99
Merged-chr4-108428456-3	chr4	108427942	108428942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21729.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	10.87	14.75	11.1	14.17	13.06	7.23	15.84	16.8	13.12
Merged-chr8-40644959-1	chr8	40644459	40645459	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-10167.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	1.14	1.84	0.0	2.7	2.8	0.0	17.96	17.69	16.24
Merged-chr4-53012090-4	chr4	53011571	53012571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025623, intron 1 of 5)	CpG	191.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	123.56	80.64	81.4	111.33	80.24	69.93	97.17	58.81	49.96
Merged-chr11-52046949-3	chr11	52046462	52047462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	42741.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	61.21	38.25	20.35	45.21	39.19	22.51	68.65	57.48	24.36
Merged-chr4-53125290-3	chr4	53124781	53125781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	34614.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	184.2	156.67	145.22	182.85	123.16	147.9	165.82	193.67	92.43
Merged-chr7-101378073-3	chr7	101377584	101378584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040112)	promoter-TSS (NM_001040112)	-38.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	171.62	151.6	104.52	136.97	100.3	114.14	146.81	167.14	133.02
Merged-chr12-110991774-3	chr12	110991281	110992281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2617.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	24.6	18.89	30.52	33.74	22.86	41.8	29.57	24.32	19.36
Merged-chr11-79076698-3	chr11	79076212	79077212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-16876.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	15.45	11.52	3.7	22.94	12.13	16.08	21.12	11.05	7.49
Merged-chr6-65165192-3	chr6	65164688	65165688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20458.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	123.56	89.85	57.35	147.76	120.83	65.11	134.14	106.56	53.08
Merged-chr3-10077320-3	chr3	10076795	10077795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10982.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	4.0	5.53	9.25	8.1	3.73	3.22	6.34	4.86	5.0
Merged-chr4-140964208-3	chr4	140963717	140964717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	intron (NM_001355515, intron 1 of 7)	2946.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	137.29	130.4	109.14	112.0	98.9	140.66	129.91	178.19	94.93
Merged-chrM-15104-2	chrM	14583	15583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											324.35	294.9	31.45	216.58	50.85	40.99	140.47	57.92	24.36
Merged-chr8-71367502-3	chr8	71366999	71367999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025917, intron 1 of 7)	intron (NM_025917, intron 1 of 7)	282.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	399.29	375.08	286.74	316.44	258.91	250.78	349.6	405.47	186.73
Merged-chr9-120885180-2	chr9	120884680	120885680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30070.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	10.87	20.27	13.87	10.8	21.46	22.51	4.22	2.65	5.0
Merged-chr10-41587514-3	chr10	41587022	41588022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 31 of 47)	intron (NM_001358562, intron 31 of 47)	19506.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	56.06	50.23	51.8	31.04	36.39	26.53	52.81	43.33	32.48
Merged-chr17-73970580-3	chr17	73970087	73971087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20391.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	53.2	43.31	33.3	61.4	54.11	54.66	89.78	80.47	67.45
Merged-chr16-49840250-3	chr16	49839797	49840797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15357.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	161.32	137.31	112.84	156.53	116.63	132.63	157.37	172.45	99.92
Merged-chr7-25794953-3	chr7	25794436	25795436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6203.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	14.3	17.05	24.05	24.96	26.59	30.54	16.9	26.09	23.73
Merged-chr4-99187002-3	chr4	99186502	99187502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-6932.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	212.23	173.72	151.69	199.04	176.81	171.21	195.39	229.04	107.42
Merged-chr8-94778670-3	chr8	94778125	94779125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009142, intron 2 of 2)	intron (NM_009142, intron 2 of 2)	6445.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	62.35	33.18	53.65	37.78	19.13	32.96	31.69	27.41	24.98
Merged-chr19-21897579-3	chr19	21897062	21898062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119222.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	17.16	22.12	27.75	22.94	22.39	30.54	15.84	18.57	14.99
Merged-chr15-102471183-3	chr15	102470699	102471699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174073, intron 1 of 12)	CpG	567.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	212.23	217.03	140.59	184.87	177.27	148.7	212.29	236.12	158.63
Merged-chr7-30322407-3	chr7	30321919	30322919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033140)	promoter-TSS (NM_001033140)	-44.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	282.02	249.75	203.49	323.86	327.02	353.67	215.46	188.81	127.4
Merged-chr16-55973760-3	chr16	55973268	55974268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173026)	promoter-TSS (NM_173026)	-36.0	NM_173026	271377.0	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	483.39	571.37	413.45	413.6	532.75	328.75	381.28	409.45	256.68
Merged-chrX-42018172-1	chrX	42017672	42018672	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49664.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	3.43	1.84	0.0	2.02	2.33	0.0	2.11	0.88	2.5
Merged-chr17-17866760-3	chr17	17866254	17867254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-11566.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	256.85	313.33	148.92	246.95	190.8	151.11	185.89	231.25	114.91
Merged-chr17-35910143-3	chr17	35909649	35910649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142745)	promoter-TSS (NM_001142745)	-74.0	NM_001357865	73242.0	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	114.41	94.92	75.85	99.86	59.71	87.61	108.79	88.43	38.72
Merged-chr7-126822206-3	chr7	126821697	126822697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026884, intron 4 of 7)	intron (NM_026884, intron 4 of 7)	-1106.0	NM_029978	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	18.88	20.74	16.65	41.83	26.59	53.85	35.91	16.36	18.11
Merged-chr5-114922082-3	chr5	114921580	114922580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1160.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	229.39	217.49	125.79	240.2	238.39	184.07	218.63	310.84	101.17
Merged-chr4-141872238-3	chr4	141871742	141872742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	2678.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	217.95	309.65	203.49	187.57	193.13	192.11	276.72	307.31	196.1
Merged-chr13-111797200-3	chr13	111796690	111797690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11803.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	175.62	124.87	107.29	163.28	113.36	128.61	185.89	159.18	90.56
Merged-chr4-125145390-3	chr4	125144900	125145900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17519.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	105.26	90.31	66.6	70.85	72.78	71.54	39.08	35.82	26.23
Merged-chr16-5050433-1	chr16	5049933	5050933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001079814)	promoter-TSS (NM_001079814)	376.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	300.9	252.51	232.16	243.57	266.84	260.43	247.15	218.43	194.23
Merged-chr12-85913298-3	chr12	85912813	85913813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 19 of 32)	RSINE1|SINE|B4	88363.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	65.21	67.74	24.97	128.2	133.89	69.93	87.66	82.69	38.72
Merged-chr2-167860711-3	chr2	167860222	167861222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71605.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	40.62	27.65	20.35	35.09	25.66	31.35	23.24	10.61	9.37
Merged-chr10-117899604-3	chr10	117899122	117900122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25837.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	232.25	226.71	122.09	294.18	206.2	159.95	285.17	364.79	131.15
Merged-chr14-105431750-3	chr14	105431253	105432253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045859, intron 1 of 2)	intron (NR_045859, intron 1 of 2)	4194.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	14.87	15.67	6.47	8.77	3.73	5.63	11.62	12.38	16.24
Merged-chr15-39944657-3	chr15	39944162	39945162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-668.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	200.22	240.53	180.37	279.33	225.32	184.87	196.45	293.6	124.28
Merged-chr1-176832790-3	chr1	176832299	176833299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3334.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	113.27	123.03	67.52	102.56	106.36	82.79	130.97	169.35	107.42
Merged-chr1-136624872-3	chr1	136624378	136625378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177643)	promoter-TSS (NM_177643)	-23.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	133.86	127.18	144.29	171.38	111.03	91.63	155.26	122.92	69.32
Merged-chr11-77078484-3	chr11	77077972	77078972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030756)	promoter-TSS (NR_030756)	-35.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	175.05	169.11	115.62	145.06	147.88	122.98	158.43	165.37	93.68
Merged-chr2-22807518-3	chr2	22807021	22808021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	33194.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	113.27	99.53	44.4	85.69	88.17	98.06	92.94	100.37	58.71
Merged-chr14-62761301-3	chr14	62760793	62761793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008715)	promoter-TSS (NM_008715)	-181.0	NM_008715	18130.0	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	249.42	210.12	189.62	230.75	174.47	172.01	179.55	183.06	140.52
Merged-chr8-125725172-3	chr8	125724683	125725683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9020.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	50.34	54.37	54.57	61.4	36.39	61.09	47.53	40.68	56.21
Merged-chr15-98934539-3	chr15	98934022	98935022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-132.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	114.98	70.96	59.2	97.83	46.65	87.61	89.78	76.05	82.44
Merged-chr12-8927819-3	chr12	8927338	8928338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6531.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	108.12	127.64	75.85	66.12	73.24	69.13	109.84	140.61	75.57
Merged-chr1-91024130-3	chr1	91023634	91024634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	25407.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	105.26	95.38	77.7	120.1	95.63	83.59	87.66	97.72	39.35
Merged-chr9-123925453-3	chr9	123924923	123925923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	43269.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	410.16	242.83	321.88	365.02	198.27	269.27	356.99	284.76	199.22
Merged-chr1-86703846-3	chr1	86703331	86704331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153530)	promoter-TSS (NM_153530)	27.0	NM_001172157	208718.0	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	80.66	61.75	61.05	107.28	79.77	54.66	90.83	60.58	50.59
Merged-chr5-111178574-5	chr5	111178117	111179117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-152080.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	229.39	274.63	160.94	259.77	314.43	225.86	307.35	298.91	136.77
Merged-chr3-58690755-3	chr3	58690262	58691262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009174, intron 1 of 1)	intron (NM_009174, intron 1 of 1)	1626.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	149.88	129.94	104.52	144.39	133.42	86.81	145.75	130.0	71.2
Merged-chr9-100435434-3	chr9	100434971	100435971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51002.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	95.53	90.77	72.15	65.45	63.45	56.27	68.65	57.92	29.98
Merged-chr6-50294332-3	chr6	50293822	50294822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-32553.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.0	3.69	1.85	4.72	2.8	3.22	2.11	2.65	9.37
Merged-chr7-118522278-3	chr7	118521777	118522777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304758, intron 5 of 6)	ORR1E|LTR|ERVL-MaLR	11079.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	28.03	22.12	21.27	36.43	25.66	33.76	39.08	42.89	18.74
Merged-chr16-10786046-1	chr16	10785546	10786546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001271603)	promoter-TSS (NM_001271603)	-510.0	NM_001271603	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	174.48	198.14	168.34	143.71	184.27	168.8	162.65	272.37	136.15
Merged-chr7-19699115-3	chr7	19698583	19699583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305819)	promoter-TSS (NM_001305819)	105.0	NM_001305843	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	89.81	82.94	66.6	128.2	89.1	164.78	142.59	149.45	48.09
Merged-chr10-29313434-3	chr10	29312916	29313916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025855)	promoter-TSS (NM_025855)	-84.0	NM_025855	52665.0	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	128.14	90.31	72.15	114.7	103.1	91.63	115.12	103.91	48.71
Merged-chr19-44107441-3	chr19	44106903	44107903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007700)	promoter-TSS (NM_007700)	74.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	120.7	112.89	109.14	106.61	91.9	86.01	109.84	112.31	70.57
Merged-chr15-5447047-3	chr15	5446549	5447549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49269.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	100.68	75.11	18.5	130.9	86.3	58.68	121.46	96.39	48.09
Merged-chr17-28738145-3	chr17	28737645	28738645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168513, intron 9 of 11)	intron (NM_001168513, intron 9 of 11)	-31172.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	49.2	70.5	48.1	60.72	39.19	45.01	57.03	42.01	45.59
Merged-chr11-116031215-3	chr11	116030709	116031709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286006, intron 1 of 15)	intron (NM_001286006, intron 1 of 15)	893.0	NM_172569	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	650.43	658.46	298.76	612.64	620.92	335.18	477.4	693.76	307.27
Merged-chr7-116334177-3	chr7	116333685	116334685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	5.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	240.26	278.77	178.52	252.34	238.85	192.91	243.98	205.17	148.01
Merged-chr15-59089928-3	chr15	59089437	59090437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-7911.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	10.3	12.44	11.1	21.59	8.4	21.7	13.73	13.71	8.74
Merged-chr7-79780938-5	chr7	79780422	79781422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037927, intron 17 of 17)	intron (NM_001037927, intron 17 of 17)	12668.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	71.51	42.85	50.87	73.54	54.58	56.27	60.2	84.01	31.23
Merged-chr4-130795107-3	chr4	130794613	130795613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	MIR|SINE|MIR	2576.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	257.42	259.42	182.22	309.7	252.85	249.98	313.69	406.35	153.63
Merged-chr11-118236738-3	chr11	118236237	118237237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11855.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	206.51	192.15	120.24	213.21	132.95	176.03	192.23	268.84	124.91
Merged-chr2-164769757-3	chr2	164769242	164770242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026785)	promoter-TSS (NM_026785)	-187.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	23.45	29.03	3.7	18.22	16.79	17.68	23.24	38.91	13.74
Merged-chr17-35209947-3	chr17	35209448	35210448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4597.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	346.09	224.4	166.49	275.96	162.34	181.66	216.52	316.15	133.65
Merged-chr17-28328359-4	chr17	28327862	28328862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-109.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	196.79	162.2	152.62	315.09	303.23	217.02	195.39	204.72	78.07
Merged-chr11-106787675-3	chr11	106787180	106788180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355676, intron 2 of 13)	CpG	814.0	NM_007840	13207.0	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	344.38	339.6	190.54	292.83	279.44	192.11	237.64	251.59	205.47
Merged-chr9-7336940-3	chr9	7336456	7337456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7441.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	58.35	77.41	89.72	76.92	73.24	94.04	73.93	61.02	79.32
Merged-chr11-94990930-3	chr11	94990426	94991426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172261)	promoter-TSS (NM_172261)	-286.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	61.21	47.46	66.6	47.9	34.52	45.01	74.99	46.87	62.45
Merged-chr1-74304081-3	chr1	74303579	74304579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	CpG	257.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	237.97	243.29	147.99	263.81	256.58	176.03	276.72	218.43	124.28
Merged-chr11-54902874-3	chr11	54902392	54903392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329860)	promoter-TSS (NM_001329860)	38.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	9.15	10.6	1.85	8.77	12.13	14.47	5.28	9.73	6.87
Merged-chr18-34222872-3	chr18	34222360	34223360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-1088.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	90.96	82.48	55.5	64.77	54.58	49.03	97.17	95.51	64.33
Merged-chrUn_GL456392-22150-1	chrUn_GL456392	21650	22650	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GSAT_MM|Satellite|Satellite											0.0	0.0	0.0	0.0	0.0	0.0	702.36	436.86	0.0
Merged-chr9-90184491-1	chr9	90183991	90184991	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 8 of 23)	intron (NM_001003911, intron 8 of 23)	21513.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	1.72	2.3	1.85	0.67	2.8	1.61	1.06	1.33	5.0
Merged-chr1-92180432-3	chr1	92179874	92180874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207225)	promoter-TSS (NM_207225)	-33.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	227.11	260.34	147.07	199.04	234.65	190.5	251.37	208.7	103.05
Merged-chr19-23125439-3	chr19	23124922	23125922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15804.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	4.58	5.07	5.55	12.14	7.46	4.82	12.67	8.4	9.37
Merged-chr16-91793788-3	chr16	91793294	91794294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 5 of 15)	intron (NM_001110276, intron 5 of 15)	64423.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	80.09	54.37	36.07	72.19	38.25	46.62	58.09	52.18	29.98
Merged-chr18-77797310-3	chr18	77796814	77797814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152167)	promoter-TSS (NR_152167)	-924.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	178.48	130.86	124.87	146.41	95.17	137.45	171.1	153.87	98.68
Merged-chr2-6471943-3	chr2	6471468	6472468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	119232.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	45.76	19.81	12.95	61.4	58.78	22.51	26.4	22.99	18.11
Merged-chr19-47855036-3	chr19	47854544	47855544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010362)	promoter-TSS (NM_010362)	71.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	152.17	158.97	97.12	172.73	205.73	159.95	158.43	188.81	80.56
Merged-chr9-56418214-3	chr9	56417700	56418700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025812)	promoter-TSS (NM_025812)	-150.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	272.87	287.07	203.49	195.67	178.21	153.52	234.47	245.4	114.29
Merged-chr3-101604112-3	chr3	101603620	101604620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	CpG	587.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	370.12	326.24	273.79	344.11	298.1	241.94	282.0	321.9	240.44
Merged-chr4-106839070-3	chr4	106838570	106839570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34063.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	16.02	16.13	9.25	18.22	8.4	7.23	9.51	7.96	8.74
Merged-chrX-163958714-3	chrX	163958216	163959216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009453)	promoter-TSS (NM_009453)	-50.0	NM_178794	22184.0	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	187.06	224.86	128.57	199.04	233.25	155.93	171.1	253.8	106.79
Merged-chr3-101836724-3	chr3	101836214	101837214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-491.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	62.93	70.04	55.5	58.7	44.32	53.05	53.87	53.5	49.34
Merged-chr17-34640931-3	chr17	34640419	34641419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3964.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	64.07	61.28	38.85	109.3	72.78	66.71	40.14	50.41	49.34
Merged-chr4-11322190-3	chr4	11321692	11322692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081201)	promoter-TSS (NM_001081201)	-61.0	NM_001081201	381510.0	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	62.93	47.92	72.15	60.05	56.45	86.01	80.27	65.88	44.97
Merged-chr1-173426550-3	chr1	173426045	173427045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	5941.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	142.44	123.03	73.07	130.9	86.3	111.73	148.92	152.55	106.79
Merged-chr14-77923665-3	chr14	77923168	77924168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	19429.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	36.61	39.63	33.3	29.69	24.72	39.39	55.98	76.94	36.22
Merged-chr18-75304682-3	chr18	75304176	75305176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7347.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	14.87	20.27	12.95	22.94	14.93	32.96	8.45	14.15	18.11
Merged-chr13-48878753-3	chr13	48878229	48879229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033268)	TTS (NM_001033268)	-7844.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	167.61	198.14	117.47	181.5	235.59	154.33	158.43	180.4	79.32
Merged-chr4-155705033-3	chr4	155704497	155705497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026899, exon 1 of 5)	5' UTR (NM_026899, exon 1 of 5)	182.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	779.71	711.45	460.63	815.06	762.27	448.51	616.81	706.14	329.13
Merged-chr18-7693098-3	chr18	7692636	7693636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-66273.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	5.72	12.44	7.4	7.42	6.06	8.04	47.53	30.07	17.49
Merged-chr8-115522701-3	chr8	115522200	115523200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	12.59	13.82	9.25	11.47	7.93	14.47	15.84	9.29	9.37
Merged-chr7-130865746-3	chr7	130865248	130866248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346515)	promoter-TSS (NM_001346515)	24.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	132.14	97.23	93.42	147.09	83.04	112.53	130.97	80.03	47.46
Merged-chr9-48558882-3	chr9	48558400	48559400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46223.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	97.25	87.09	55.5	82.99	56.45	73.95	57.03	36.7	48.71
Merged-chr8-3467668-3	chr8	3467176	3468176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026951)	promoter-TSS (NM_026951)	-28.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	36.61	34.1	19.42	43.18	33.59	27.33	31.69	23.88	21.23
Merged-chr6-124814153-3	chr6	124813654	124814654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001326594)	TTS (NM_001326594)	142.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	62.35	42.85	63.82	71.52	29.86	62.7	66.54	68.09	47.46
Merged-chr8-57463008-3	chr8	57462508	57463508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009136, intron 1 of 2)	intron (NM_009136, intron 1 of 2)	7085.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	14.3	25.8	20.35	28.34	26.59	42.6	24.29	17.24	14.99
Merged-chr17-71257346-2	chr17	71256842	71257842	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52688.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	90.38	72.8	41.62	178.13	132.49	107.71	4.22	7.07	6.25
Merged-chr14-46832115-3	chr14	46831605	46832605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-29.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	180.77	168.19	90.65	189.6	196.4	110.12	211.24	214.89	86.18
Merged-chr17-47184319-3	chr17	47183797	47184797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	43355.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	156.17	148.37	74.0	157.88	118.49	59.48	55.98	53.06	39.97
Merged-chr2-156324334-3	chr2	156323834	156324834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 2 of 12)	intron (NM_027585, intron 2 of 12)	-11630.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	53.77	77.87	47.17	9.45	14.0	21.7	88.72	116.29	71.82
Merged-chr14-55643353-7	chr14	55642830	55643830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360063)	promoter-TSS (NM_001360063)	41.0	NM_001360063	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	337.51	386.6	283.96	263.14	274.31	255.6	301.01	240.1	163.63
Merged-chr13-54590140-3	chr13	54589616	54590616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	-42.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	177.91	163.58	151.69	149.79	133.42	135.84	155.26	152.99	103.67
Merged-chr17-78736711-3	chr17	78736197	78737197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011500)	promoter-TSS (NM_011500)	-137.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	89.81	100.91	116.54	101.88	89.57	122.18	110.9	113.19	69.32
Merged-chr15-38473499-2	chr15	38472992	38473992	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17055.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	282.02	224.4	214.59	257.07	170.28	212.2	237.64	209.59	151.14
Merged-chr17-80480461-3	chr17	80480017	80481017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009231)	promoter-TSS (NM_009231)	-64.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	71.51	62.21	74.92	83.66	63.91	65.91	101.39	74.28	47.46
Merged-chr14-60736780-3	chr14	60736284	60737284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310594, intron 1 of 9)	intron (NM_001310594, intron 1 of 9)	3880.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	52.06	62.21	53.65	44.53	33.12	37.78	49.64	46.87	26.85
Merged-chr3-61241524-1	chr3	61241024	61242024	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122983.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.86	2.3	0.0	3.37	2.8	4.82	5.28	0.88	6.87
Merged-chr11-94979129-3	chr11	94978622	94979622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2795.0	NM_009161	20391.0	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	20.02	7.83	3.7	14.17	4.2	12.86	8.45	6.63	7.49
Merged-chr12-33315405-3	chr12	33314903	33315903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	12888.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	62.35	62.67	67.52	64.1	61.58	69.13	89.78	94.62	61.2
Merged-chr16-91880687-3	chr16	91880197	91881197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	50933.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	130.43	92.16	33.3	134.27	83.97	125.39	105.62	118.5	60.58
Merged-chr10-86065160-3	chr10	86064672	86065672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 10 of 13)	intron (NM_013722, intron 10 of 13)	-30682.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	29.75	25.8	31.45	16.19	10.73	22.51	74.99	39.8	32.48
Merged-chr9-22131341-3	chr9	22130887	22131887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	478.0	NM_001102404	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	76.08	55.75	37.92	69.5	54.11	76.36	51.75	53.94	32.48
Merged-chr18-49832602-3	chr18	49832116	49833116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081371)	promoter-TSS (NM_001081371)	-381.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	243.12	167.73	217.36	215.23	157.68	156.74	223.91	166.25	105.55
Merged-chr13-99006803-3	chr13	99006307	99007307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22242.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	136.15	88.47	97.12	149.11	107.3	90.83	200.68	165.37	76.19
Merged-chr11-70680108-3	chr11	70679626	70680626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190379, intron 8 of 20)	intron (NM_001190379, intron 8 of 20)	7979.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	68.07	42.85	50.87	61.4	39.65	49.83	52.81	49.96	59.95
Merged-chr4-41135376-3	chr4	41134823	41135823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026275)	promoter-TSS (NM_026275)	-698.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	161.89	123.95	177.59	128.2	123.62	152.72	190.11	129.11	134.27
Merged-chr1-131084441-3	chr1	131083946	131084946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	13397.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	196.21	187.08	152.62	221.31	224.86	189.69	217.57	234.35	129.9
Merged-chr18-39560933-3	chr18	39560415	39561415	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73670.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	20.59	13.82	5.55	26.99	18.19	15.27	9.51	10.17	6.25
Merged-chr13-113614770-3	chr13	113614272	113615272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	3792.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	212.8	245.14	133.19	292.83	287.37	217.83	211.24	322.34	177.37
Merged-chr12-12249706-3	chr12	12249180	12250180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12459.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	44.62	40.55	38.85	31.71	23.79	26.53	78.16	43.77	40.59
Merged-chr17-27909304-3	chr17	27908822	27909822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	16.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	399.87	353.88	345.01	365.02	257.05	233.9	285.17	253.8	208.59
Merged-chr11-117780816-3	chr11	117780326	117781326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145439)	promoter-TSS (NM_145439)	-134.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	287.17	236.84	188.69	332.64	222.06	266.05	248.2	293.16	131.78
Merged-chr7-142340726-3	chr7	142340222	142341222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	31537.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	169.9	176.02	117.47	73.54	39.65	56.27	122.52	139.28	91.18
Merged-chr17-46248045-3	chr17	46247537	46248537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145353)	promoter-TSS (NM_145353)	8.0	NM_009085	20016.0	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	128.14	125.79	86.95	128.87	111.96	106.1	122.52	115.41	85.56
Merged-chr16-58502079-3	chr16	58501603	58502603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	21323.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	253.42	150.22	144.29	182.17	97.97	123.78	161.6	179.96	133.02
Merged-chr4-59805808-3	chr4	59805293	59806293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172468, exon 1 of 9)	5' UTR (NM_172468, exon 1 of 9)	143.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	121.85	122.57	110.07	140.34	132.49	124.59	166.88	130.88	84.94
Merged-chr8-31187326-3	chr8	31186931	31187931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286424)	promoter-TSS (NM_001286424)	100.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	26.31	31.79	18.5	25.64	31.26	33.76	10.56	9.73	5.62
Merged-chr10-42841751-1	chr10	42841251	42842251	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18761.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	1.72	2.3	5.55	10.8	1.4	6.43	3.17	0.88	0.0
Merged-chr10-39420996-3	chr10	39420505	39421505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	51206.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	140.15	152.98	97.12	149.79	118.49	95.65	154.2	161.39	74.94
Merged-chr9-103425117-3	chr9	103424632	103425632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001002896, exon 7 of 7)	3' UTR (NM_001002896, exon 7 of 7)	1554.0	NR_040466	100529079.0	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	9.15	7.83	3.7	8.1	5.13	8.04	5.28	6.19	5.0
Merged-chr7-45896824-3	chr7	45896320	45897320	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	-109.0	NM_021482	58867.0	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	16.02	29.49	24.05	26.99	26.12	32.96	30.63	38.91	38.1
Merged-chr17-83430783-3	chr17	83430249	83431249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 5 of 21)	intron (NM_001357886, intron 5 of 21)	79818.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	13.73	8.29	0.92	7.42	8.86	5.63	5.28	6.63	5.0
Merged-chr9-100643428-3	chr9	100642938	100643938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-10.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	192.21	164.04	173.89	161.93	113.83	135.84	149.98	111.43	103.05
Merged-chr3-95526803-3	chr3	95526298	95527298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267695)	promoter-TSS (NM_001267695)	12.0	NM_001267695	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	167.61	119.8	86.02	130.9	95.17	110.12	143.64	131.32	96.18
Merged-chr5-138257203-3	chr5	138256710	138257710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081108, intron 2 of 3)	intron (NM_001081108, intron 2 of 3)	1728.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	26.89	39.17	35.15	32.39	34.99	59.48	23.24	32.28	29.35
Merged-chr10-13837886-3	chr10	13837389	13838389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31068.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	105.26	73.73	36.07	140.34	76.97	49.03	26.4	16.8	14.99
Merged-chr11-35838536-3	chr11	35838013	35839013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_170779)	TTS (NM_170779)	-3985.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	29.75	36.4	20.35	49.93	61.58	46.62	48.58	38.91	14.99
Merged-chr17-86977407-3	chr17	86976899	86977899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	HAL1ME|LINE|L1	14288.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	40.04	34.56	12.95	49.25	41.05	45.01	57.03	51.73	48.71
Merged-chr6-100272195-3	chr6	100271719	100272719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019743, intron 2 of 4)	intron (NM_019743, intron 2 of 4)	15139.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	18.31	22.58	27.75	28.34	23.79	22.51	19.01	11.94	13.74
Merged-chr13-45968355-3	chr13	45967871	45968871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3380.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	93.82	56.68	54.57	56.0	30.79	45.01	57.03	37.58	25.61
Merged-chr6-128200715-3	chr6	128200227	128201227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16924.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	89.24	80.64	68.45	99.18	90.97	78.77	29.57	30.51	17.49
Merged-chr13-100124875-3	chr13	100124381	100125381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011420)	promoter-TSS (NM_011420)	26.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	57.78	65.43	27.75	56.68	55.05	38.58	70.76	68.09	21.86
Merged-chr11-109363533-3	chr11	109363031	109364031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038097, exon 1 of 2)	non-coding (NR_038097, exon 1 of 2)	123.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	470.23	482.44	379.23	477.03	438.98	303.83	459.44	524.41	216.71
Merged-chr13-116972409-3	chr13	116971909	116972909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	PB1D9|SINE|Alu	53107.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	45.76	40.55	14.8	27.66	29.86	34.56	51.75	57.04	41.84
Merged-chr10-67715194-3	chr10	67714677	67715677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143218.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	52.06	47.46	55.5	78.27	36.85	61.89	60.2	30.95	52.46
Merged-chr2-91202914-3	chr2	91202423	91203423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007387)	promoter-TSS (NM_007387)	11.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	179.62	208.74	192.39	187.57	170.74	193.71	197.51	167.58	159.88
Merged-chr1-61146283-3	chr1	61145793	61146793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168379.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	17.73	10.6	7.4	18.89	12.6	9.65	24.29	17.24	7.49
Merged-chr8-4275950-3	chr8	4275440	4276440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	-35.0	NM_011592	21856.0	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	164.75	161.27	101.74	126.17	113.83	110.92	183.78	134.86	91.81
Merged-chr1-14596205-3	chr1	14595741	14596741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	159725.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	14.3	17.05	9.25	14.17	8.86	14.47	8.45	12.38	9.99
Merged-chr4-35225966-4	chr4	35225477	35226477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-97.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	345.52	334.07	242.34	369.75	329.82	265.25	312.63	358.6	163.63
Merged-chr5-142949807-1	chr5	142949307	142950307	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10548.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	1.14	4.61	0.92	2.7	2.8	4.82	10.56	1.33	3.75
Merged-chr19-32760652-3	chr19	32760152	32761152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	3075.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	187.63	250.21	64.75	170.03	139.95	94.85	199.62	231.7	92.43
Merged-chr15-31224311-3	chr15	31223822	31224822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146057)	promoter-TSS (NM_146057)	-63.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	61.78	59.9	42.55	136.29	93.77	102.88	106.67	76.94	47.46
Merged-chr19-18631905-3	chr19	18631423	18632423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145497)	promoter-TSS (NM_145497)	-93.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	228.82	252.05	188.69	179.47	182.4	200.14	133.08	164.93	146.14
Merged-chr15-80619997-3	chr15	80619481	80620481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289442, intron 1 of 7)	AmnSINE1|SINE|Deu	-3502.0	NM_010815	17444.0	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	5.72	6.91	5.55	8.1	1.87	1.61	7.39	3.1	3.12
Merged-chr3-152193845-3	chr3	152193361	152194361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025926)	promoter-TSS (NM_025926)	-16.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	144.16	137.31	49.02	128.2	139.49	87.61	90.83	127.34	67.45
Merged-chr1-153752705-3	chr1	153752215	153753215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011882, intron 2 of 8)	intron (NM_011882, intron 2 of 8)	3289.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	348.38	419.31	160.94	294.18	327.02	272.48	277.78	435.09	182.99
Merged-chr9-36767800-3	chr9	36767305	36768305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-227.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	229.39	327.62	195.17	205.79	262.64	188.09	268.27	305.54	147.39
Merged-chr5-148548161-3	chr5	148547636	148548636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	3537.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	138.44	133.17	46.25	118.08	68.58	87.61	178.5	167.58	85.56
Merged-chr10-87830859-3	chr10	87830354	87831354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-27411.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	119.56	112.89	105.44	151.81	110.56	159.15	158.43	207.82	106.79
Merged-chr13-37537480-1	chr13	37536980	37537980	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	192135.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.72	5.07	3.7	0.0	2.33	1.61	58.09	50.41	28.1
Merged-chr10-49151697-1	chr10	49151197	49152197	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358866, intron 14 of 16)	ERVB4_3-LTR_MM|LTR|ERVK	636240.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	1.14	3.69	3.7	7.42	11.66	25.72	1.06	2.65	2.5
Merged-chr2-129602076-3	chr2	129601560	129602560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	6598.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	49.77	35.48	46.25	44.53	35.45	45.01	27.46	42.89	28.73
Merged-chr3-21129029-3	chr3	21128534	21129534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-761857.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	6.29	6.91	3.7	4.72	5.6	6.43	2.11	1.33	1.87
Merged-chr1-86501742-3	chr1	86501231	86502231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24826.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	8.01	4.15	1.85	10.12	3.73	8.04	4.22	4.86	5.0
Merged-chr2-166448479-1	chr2	166447979	166448979	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015558, exon 1 of 3)	non-coding (NR_015558, exon 1 of 3)	1028.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	271.15	270.02	192.39	566.09	454.85	329.55	517.53	528.39	225.45
Merged-chr9-44234210-3	chr9	44233734	44234734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007619)	promoter-TSS (NM_007619)	-188.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	163.04	131.32	134.12	139.67	119.89	130.21	171.1	205.17	116.16
Merged-chr8-108911061-3	chr8	108910566	108911566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25794.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	71.51	93.54	77.7	121.45	119.43	62.7	91.89	99.93	42.47
Merged-chr17-35219794-3	chr17	35219327	35220327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010909)	TTS (NM_010909)	-14476.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	69.22	73.26	43.47	81.64	39.19	65.11	74.99	56.16	39.97
Merged-chr1-59670798-3	chr1	59670298	59671298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009460)	promoter-TSS (NM_009460)	36.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	468.51	455.72	418.08	376.49	336.35	335.18	427.76	322.78	266.67
Merged-chr5-139702402-3	chr5	139701918	139702918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33915.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	45.76	36.4	25.9	58.03	26.59	28.13	62.31	27.86	27.48
Merged-chr8-25597073-3	chr8	25596575	25597575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173012, intron 1 of 10)	CpG	412.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	442.2	425.3	367.21	401.46	350.35	312.67	322.14	403.26	240.44
Merged-chr5-90903241-3	chr5	90902728	90903728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009140)	promoter-TSS (NM_009140)	-671.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	91.53	45.16	25.9	91.09	42.92	49.03	74.99	35.82	31.85
Merged-chr17-56266518-3	chr17	56266039	56267039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9746.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	184.2	198.14	146.14	230.75	203.4	139.86	216.52	288.29	103.05
Merged-chr13-9764559-3	chr13	9764069	9765069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-99.0	NM_001347472	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	306.62	251.59	287.66	334.66	215.53	234.71	346.43	154.76	151.14
Merged-chr2-4567174-3	chr2	4566669	4567669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	7415.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	63.5	81.1	88.8	68.15	73.24	95.65	115.12	114.08	62.45
Merged-chr19-9931272-3	chr19	9930775	9931775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31742.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	257.42	235.92	164.64	332.64	255.65	197.73	202.79	259.11	131.78
Merged-chr5-66151605-3	chr5	66151091	66152091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	363.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	267.15	360.79	264.54	304.97	305.1	252.39	328.47	382.47	231.08
Merged-chr6-86684504-3	chr6	86684010	86685010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025665)	promoter-TSS (NM_025665)	-19.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	97.25	82.48	55.5	99.18	96.57	86.01	88.72	93.74	43.09
Merged-chr7-34313465-3	chr7	34312966	34313966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-27857.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	117.27	80.64	80.47	104.58	61.11	74.75	121.46	59.25	31.85
Merged-chr10-128035486-3	chr10	128034972	128035972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001113199, exon 1 of 9)	5' UTR (NM_001113199, exon 1 of 9)	126.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	370.12	343.28	205.34	304.97	367.61	228.28	302.07	332.51	169.25
Merged-chr11-110967800-3	chr11	110967281	110968281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-252.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	144.73	124.41	67.52	167.33	142.75	89.22	159.48	189.69	88.06
Merged-chr7-45333679-3	chr7	45333183	45334183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175130)	promoter-TSS (NM_175130)	97.0	NM_175130	68667.0	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	97.25	58.98	62.9	122.8	81.17	96.45	88.72	61.9	37.47
Merged-chr4-141547122-3	chr4	141546643	141547643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030695, exon 1 of 1)	non-coding (NR_030695, exon 1 of 1)	981.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	407.3	337.75	222.91	321.84	196.87	224.26	360.16	412.54	206.72
Merged-chr1-106408128-3	chr1	106407623	106408623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138508.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	14.3	13.36	22.2	19.57	17.73	26.53	16.9	14.59	14.36
Merged-chr12-3804131-3	chr12	3803644	3804644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2836.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	9.72	15.67	11.1	12.82	7.93	13.66	25.35	14.59	19.36
Merged-chr11-110698626-3	chr11	110698122	110699122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	219282.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	19.45	17.51	5.55	46.56	21.46	28.94	22.18	18.57	14.36
Merged-chr7-6155188-3	chr7	6154692	6155692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	CpG	779.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	320.92	296.28	319.11	289.45	239.32	228.28	275.66	334.28	182.99
Merged-chr7-82867133-3	chr7	82866648	82867648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175366)	promoter-TSS (NM_175366)	-185.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	34.9	20.74	56.42	22.27	25.19	29.74	58.09	65.44	73.07
Merged-chr19-28658697-3	chr19	28658160	28659160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	L1MC4|LINE|L1	-19564.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	36.04	17.51	7.4	52.63	41.05	67.52	13.73	15.03	11.87
Merged-chr7-136894485-3	chr7	136893982	136894982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-129.0	NM_008598	17314.0	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	25.74	23.04	20.35	44.53	30.32	20.09	28.52	27.86	19.98
Merged-chr13-102690241-3	chr13	102689748	102690748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-3299.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	360.39	286.15	137.82	267.86	215.53	184.07	310.52	334.72	146.76
Merged-chr5-134552424-3	chr5	134551934	134552934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009990)	promoter-TSS (NM_009990)	0.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	139.58	143.76	159.09	166.66	153.95	111.73	188.0	182.17	94.3
Merged-chr18-31634253-3	chr18	31633739	31634739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357554)	promoter-TSS (NM_001357554)	-129.0	NM_001357554	269003.0	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	111.55	130.86	143.37	177.45	253.31	286.15	94.0	114.96	74.94
Merged-chr2-91727154-3	chr2	91726603	91727603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3035.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	45.76	41.47	34.22	47.23	38.25	57.87	55.98	48.64	37.47
Merged-chr7-145030838-3	chr7	145030344	145031344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90919.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	101.25	113.35	94.35	112.0	119.43	138.25	116.18	123.36	64.33
Merged-chr7-6383286-3	chr7	6382783	6383783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175247)	promoter-TSS (NM_175247)	-35.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	7.44	10.6	9.25	20.92	15.86	6.43	13.73	3.98	11.24
Merged-chr9-123480758-3	chr9	123480249	123481249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	2048.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	9.72	24.42	12.95	18.22	14.0	18.49	20.07	11.94	17.49
Merged-chr10-37232088-3	chr10	37231581	37232581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93155.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	170.47	146.07	122.09	137.64	95.17	144.68	149.98	153.87	94.93
Merged-chr7-100607531-3	chr7	100607033	100608033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163663)	promoter-TSS (NM_001163663)	-53.0	NM_024287	19346.0	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	244.84	195.37	140.59	163.28	174.47	151.11	210.18	189.25	90.56
Merged-chr4-43460840-3	chr4	43460347	43461347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6221.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	42.33	30.87	49.02	56.0	33.59	56.27	46.47	33.6	47.46
Merged-chr16-4678267-3	chr16	4677746	4678746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 1 of 27)	intron (NM_030205, intron 1 of 27)	1474.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	154.45	180.17	143.37	139.67	129.22	118.16	210.18	221.97	118.04
Merged-chr16-95902395-3	chr16	95901888	95902888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	-3675.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	9.72	8.29	9.25	6.75	3.73	4.02	10.56	15.48	5.0
Merged-chr3-94413151-3	chr3	94412632	94413632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357713)	promoter-TSS (NM_001357713)	-112.0	NM_001357713	72634.0	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	22.88	21.66	14.8	41.16	37.32	46.62	44.36	32.28	26.23
Merged-chr15-83555710-3	chr15	83555200	83556200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001030014)	promoter-TSS (NM_001030014)	11.0	NM_001030014	223722.0	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	50.91	49.76	81.4	48.58	58.78	62.7	44.36	42.01	39.97
Merged-chr2-90583751-3	chr2	90583239	90584239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3092.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	53.2	41.47	15.72	46.56	36.85	23.31	34.85	22.11	14.99
Merged-chr1-143999549-3	chr1	143999058	144000058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	4591.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	48.62	28.57	15.72	36.43	19.59	19.29	16.9	22.11	19.98
Merged-chr5-111044675-3	chr5	111044172	111045172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	40528.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	9.72	13.82	2.77	21.59	17.26	19.29	16.9	11.5	6.25
Merged-chr9-110645360-3	chr9	110644877	110645877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	8784.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	32.04	28.57	14.8	19.57	21.46	16.88	28.52	27.86	18.74
Merged-chr12-76943699-3	chr12	76943211	76944211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	18537.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	155.6	129.94	87.87	141.02	148.35	116.55	156.32	151.22	54.96
Merged-chr5-98018335-3	chr5	98017840	98018840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 3 of 16)	intron (NM_133738, intron 3 of 16)	12622.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	14.87	21.66	7.4	16.87	6.06	4.82	5.28	9.73	2.5
Merged-chr4-59549444-3	chr4	59548942	59549942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178164)	promoter-TSS (NM_178164)	-78.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	309.48	257.58	240.49	265.84	267.31	264.45	258.77	240.1	202.35
Merged-chr11-87987142-2	chr11	87986657	87987657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	376.0	NM_026556	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	162.46	104.6	170.19	124.82	101.7	104.49	166.88	99.93	91.81
Merged-chr2-130424297-3	chr2	130423794	130424794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030559)	promoter-TSS (NM_030559)	-6.0	NM_178762	319513.0	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	332.94	336.37	210.89	360.3	340.55	321.52	267.21	297.14	210.47
Merged-chr1-167247187-3	chr1	167246672	167247672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	37955.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	17.73	12.44	7.4	12.14	7.46	25.72	6.34	6.19	13.74
Merged-chr2-167777951-3	chr2	167777426	167778426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86749.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	714.5	550.64	308.01	644.36	527.15	292.58	491.13	593.39	195.48
Merged-chr3-79128023-3	chr3	79127526	79128526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	16861.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	120.7	114.74	80.47	104.58	81.17	63.5	125.69	133.98	82.44
Merged-chr14-31376556-3	chr14	31376060	31377060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39922.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	143.01	117.5	61.05	184.2	99.37	73.95	158.43	173.77	64.33
Merged-chr10-94381197-3	chr10	94380703	94381703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69254.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	53.2	30.87	31.45	71.52	52.72	63.5	48.58	47.31	38.1
Merged-chr5-31882463-3	chr5	31881955	31882955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	184405.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	54.35	97.69	62.9	85.01	60.65	55.46	49.64	49.08	51.21
Merged-chr9-31386118-3	chr9	31385593	31386593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172766)	promoter-TSS (NM_172766)	-99.0	NM_172766	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	91.53	56.22	37.0	72.19	57.38	59.48	98.23	49.52	39.97
Merged-chr2-168563409-3	chr2	168562888	168563888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	26977.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	24.6	17.05	15.72	22.27	11.66	13.66	13.73	2.21	2.5
Merged-chr17-57334966-3	chr17	57334446	57335446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23740.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	74.37	60.82	49.02	53.98	33.12	47.42	77.1	79.15	37.47
Merged-chr1-134414698-3	chr1	134414189	134415189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	-689.0	NM_028320	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	156.17	124.41	119.32	146.41	124.09	147.9	133.08	158.3	91.18
Merged-chr7-132551934-3	chr7	132551451	132552451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24447.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	4.58	4.61	3.7	6.75	5.13	6.43	5.28	5.75	2.5
Merged-chr6-57542200-3	chr6	57541696	57542696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-6770.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	24.6	19.35	21.27	10.12	5.13	18.49	20.07	10.61	13.12
Merged-chr5-32122544-3	chr5	32122062	32123062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13910.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	37.18	22.12	19.42	36.43	15.86	51.44	29.57	16.36	15.61
Merged-chr7-25106005-3	chr7	25105502	25106502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-8827.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	9.72	12.44	11.1	13.49	8.4	13.66	11.62	13.71	8.12
Merged-chr11-69766210-5	chr11	69765670	69766670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	CpG	258.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	431.9	376.46	291.36	419.0	315.36	294.99	389.73	371.86	201.1
Merged-chr14-56886441-3	chr14	56885962	56886962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029498)	promoter-TSS (NM_029498)	-141.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	113.27	121.65	131.34	107.28	82.57	80.38	153.15	88.88	77.44
Merged-chr14-70767694-3	chr14	70767193	70768193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	-1065.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	56.63	73.73	60.12	48.58	49.45	87.61	83.44	97.72	57.46
Merged-chr10-95501915-3	chr10	95501393	95502393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359477)	promoter-TSS (NM_001359477)	56.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	87.52	80.64	64.75	93.79	101.7	63.5	99.28	94.62	44.97
Merged-chr11-20542969-3	chr11	20542495	20543495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021372)	promoter-TSS (NM_021372)	-258.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	179.05	94.46	165.57	125.5	104.5	110.12	135.19	115.41	82.44
Merged-chr8-94584593-3	chr8	94584071	94585071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028221, intron 5 of 7)	intron (NM_028221, intron 5 of 7)	17155.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	8.01	3.23	6.47	7.42	7.46	1.61	7.39	5.75	2.5
Merged-chr6-113419322-3	chr6	113418804	113419804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346511)	promoter-TSS (NM_001346511)	36.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	18.31	14.28	10.17	14.84	20.06	23.31	15.84	10.17	10.62
Merged-chr11-58928503-3	chr11	58928011	58929011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10395.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	109.83	152.98	104.52	116.05	104.5	96.45	183.78	184.38	101.8
Merged-chr8-59234646-1	chr8	59234146	59235146	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	322891.0	NM_173411	234290.0	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	6.29	5.07	3.7	4.72	3.73	1.61	3.17	6.63	2.5
Merged-chr8-35136790-1	chr8	35136290	35137290	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-171100.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	1.14	3.23	0.0	4.05	1.87	3.22	17.96	6.63	12.49
Merged-chr8-71628016-3	chr8	71627533	71628533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	3073.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	125.28	113.81	112.84	187.57	114.29	125.39	156.32	173.33	65.58
Merged-chr10-19099863-4	chr10	19099324	19100324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41925.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	148.73	132.25	100.82	128.87	84.44	68.32	138.36	181.29	77.44
Merged-chr19-53944123-3	chr19	53943644	53944644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355242)	promoter-TSS (NM_001355242)	-162.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	236.83	307.34	186.84	191.62	212.73	184.07	241.87	232.58	146.76
Merged-chr10-122097363-3	chr10	122096866	122097866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153059)	promoter-TSS (NM_153059)	-264.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	78.94	57.14	41.62	89.74	57.85	83.59	87.66	51.73	29.35
Merged-chr1-13374355-3	chr1	13373786	13374786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008678)	promoter-TSS (NM_008678)	-203.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	209.37	182.47	188.69	230.75	149.75	139.06	266.16	208.26	135.52
Merged-chr2-90479962-3	chr2	90479450	90480450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-776.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	107.55	99.53	115.62	127.52	64.84	102.88	104.56	115.85	60.58
Merged-chr11-49204121-3	chr11	49203625	49204625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	625.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	359.82	371.39	274.71	315.77	320.49	258.82	354.88	346.66	210.47
Merged-chr1-140183361-3	chr1	140182851	140183851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009888)	promoter-TSS (NM_009888)	60.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	54.35	50.69	15.72	53.3	30.79	39.39	50.7	57.48	33.1
Merged-chr11-51931965-3	chr11	51931457	51932457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-35674.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	118.42	86.63	84.17	99.18	73.24	95.65	96.11	103.91	49.96
Merged-chr16-58499855-3	chr16	58499361	58500361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	intron (NM_001357433, intron 2 of 10)	23565.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	122.42	96.76	51.8	151.14	123.16	125.39	113.01	119.39	61.83
Merged-chr9-57652554-3	chr9	57652049	57653049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 1 of 14)	intron (NM_001304761, intron 1 of 14)	1082.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	241.98	206.89	157.24	207.14	145.08	176.83	226.02	272.82	114.91
Merged-chr6-29694163-3	chr6	29693660	29694660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146173)	promoter-TSS (NM_146173)	-54.0	NM_001301407	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	10.87	1.84	9.25	6.07	3.73	4.82	8.45	6.19	1.25
Merged-chr13-112760685-3	chr13	112760199	112761199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40078.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.86	5.07	0.0	53.3	32.66	33.76	27.46	30.51	19.98
Merged-chr5-65391473-3	chr5	65390971	65391971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011292)	promoter-TSS (NM_011292)	-26.0	NM_024471	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	283.74	311.49	178.52	291.48	293.9	212.2	274.61	288.29	176.12
Merged-chr8-25087744-3	chr8	25087248	25088248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	MIR3|SINE|MIR	14063.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	50.34	61.75	54.57	62.07	27.99	51.44	45.42	40.68	45.59
Merged-chr2-44920674-3	chr2	44920200	44921200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59078.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	50.91	58.98	37.92	82.99	83.97	61.09	62.31	57.92	27.48
Merged-chr3-87525594-3	chr3	87525097	87526097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012051)	promoter-TSS (NM_012051)	19.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	318.06	287.07	294.14	284.06	278.97	259.62	183.78	221.08	157.38
Merged-chr17-35516910-3	chr17	35516398	35517398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146248)	promoter-TSS (NM_146248)	-74.0	NM_025674	106795.0	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	12.59	9.68	23.12	17.54	8.86	17.68	9.51	8.84	7.49
Merged-chr9-86464773-3	chr9	86464247	86465247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027394, exon 1 of 10)	exon (NM_027394, exon 1 of 10)	169.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	25.17	17.51	9.25	35.76	22.39	15.27	27.46	9.73	13.74
Merged-chr5-114926988-3	chr5	114926488	114927488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3748.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	93.24	63.13	43.47	138.32	61.11	49.03	96.11	81.36	55.58
Merged-chr1-180417340-3	chr1	180416835	180417835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 4 of 7)	intron (NM_001081175, intron 4 of 7)	66169.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	57.78	24.42	40.7	40.48	18.66	10.45	22.18	10.61	7.49
Merged-chr1-138159136-3	chr1	138158661	138159661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	15965.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	268.29	285.23	151.69	230.75	219.73	176.03	210.18	263.53	149.89
Merged-chr4-103025545-3	chr4	103025039	103026039	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290648, intron 2 of 2)	intron (NM_001290648, intron 2 of 2)	1189.0	NM_011831	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	26.89	11.06	12.02	16.19	8.4	12.86	7.39	6.63	5.62
Merged-chr12-25096197-3	chr12	25095718	25096718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010496)	promoter-TSS (NM_010496)	-126.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	219.1	155.28	124.87	210.51	191.73	197.73	166.88	240.54	140.52
Merged-chr10-117449944-3	chr10	117449443	117450443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2508.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	5.72	8.75	12.95	10.8	7.0	6.43	11.62	8.4	14.36
Merged-chr12-110601386-3	chr12	110600874	110601874	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030238)	promoter-TSS (NM_030238)	-21.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	190.49	233.16	154.47	168.0	210.4	136.64	160.54	162.28	168.0
Merged-chr17-64590676-3	chr17	64590172	64591172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10977.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	46.34	27.19	22.2	33.06	21.46	18.49	49.64	49.52	20.61
Merged-chr16-91729226-3	chr16	91728724	91729724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133679)	promoter-TSS (NM_133679)	-147.0	NM_001110275	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	52.63	39.63	74.0	59.38	41.05	67.52	78.16	39.35	32.48
Merged-chr7-140997999-3	chr7	140997504	140998504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12740.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	31.46	33.64	46.25	21.59	22.86	28.13	34.85	28.74	21.86
Merged-chr3-30992350-3	chr3	30991849	30992849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3422.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	13.16	14.28	31.45	30.36	35.92	37.78	32.74	23.43	19.36
Merged-chr13-105117746-1	chr13	105117246	105118246	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025751, intron 5 of 7)	L1_Mur2|LINE|L1	35624.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	2.29	3.69	0.0	3.37	3.27	3.22	4.22	0.0	1.25
Merged-chr17-57358570-3	chr17	57358064	57359064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-122.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	108.12	87.55	80.47	98.51	64.84	82.79	117.24	116.29	73.07
Merged-chr3-126829934-2	chr3	126829442	126830442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	113444.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	22.31	13.82	21.27	28.34	16.79	9.65	5.28	3.98	6.25
Merged-chr2-144047109-3	chr2	144046608	144047608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	14006.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	28.03	39.63	36.07	25.64	21.46	29.74	21.12	29.63	23.73
Merged-chr6-120463238-3	chr6	120462734	120463734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008359)	promoter-TSS (NM_008359)	37.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	94.39	89.85	98.05	128.2	124.09	151.11	118.29	82.24	76.19
Merged-chr12-99993693-3	chr12	99993196	99994196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	MIR|SINE|MIR	29197.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	134.43	119.34	91.57	207.81	148.35	90.83	108.79	99.05	44.97
Merged-chr7-35754487-3	chr7	35753972	35754972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178704)	promoter-TSS (NM_178704)	-18.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	100.11	94.46	87.87	95.14	92.84	81.99	108.79	63.23	34.35
Merged-chr10-13499641-4	chr10	13499141	13500141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1387.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	116.7	93.08	72.15	109.98	50.38	77.97	102.45	69.42	52.46
Merged-chr2-27010004-3	chr2	27009519	27010519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029862)	promoter-TSS (NM_029862)	93.0	NM_001243239	381356.0	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	101.83	82.48	59.2	99.86	74.17	85.2	76.05	63.23	46.84
Merged-chr11-23830477-3	chr11	23829985	23830985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-59515.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	12.59	8.75	18.5	17.54	7.46	5.63	5.28	7.96	13.12
Merged-chr11-74828586-3	chr11	74828092	74829092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2332.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	137.86	124.41	123.02	199.72	142.75	134.23	138.36	151.66	99.3
Merged-chrX-134751430-3	chrX	134750904	134751904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007578)	promoter-TSS (NM_001007578)	15.0	NM_001007578	278097.0	Mm.113272	NM_001007578	ENSMUSG00000050394	Armcx6	AW060994	armadillo repeat containing, X-linked 6	protein-coding	25.74	26.26	20.35	52.63	31.26	11.25	39.08	33.16	13.12
Merged-chr15-33211563-3	chr15	33211059	33212059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	intron (NM_018755, intron 2 of 8)	128430.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	90.96	121.19	101.74	97.16	78.37	61.09	137.3	137.07	58.71
Merged-chr4-40287621-3	chr4	40287125	40288125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8204.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	22.31	22.58	30.52	10.12	6.53	15.27	20.07	8.4	24.36
Merged-chr15-103462744-3	chr15	103462227	103463227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153505, exon 7 of 31)	exon (NM_153505, exon 7 of 31)	8902.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	36.04	28.11	33.3	31.71	14.46	24.11	20.07	22.11	26.85
Merged-chr11-22818630-3	chr11	22818144	22819144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41091.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	44.05	34.1	31.45	44.53	39.65	40.99	41.19	35.82	24.98
Merged-chr14-46886107-3	chr14	46885604	46886604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	3139.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	38.9	22.12	20.35	31.71	20.99	21.7	34.85	29.18	30.6
Merged-chr3-149393560-3	chr3	149393066	149394066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118829.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	21.74	11.06	4.62	17.54	20.53	16.08	25.35	19.9	18.74
Merged-chr7-128622668-3	chr7	128622167	128623167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	11302.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	22.88	34.1	14.8	32.39	29.86	16.88	13.73	8.84	14.99
Merged-chr3-9004561-4	chr3	9004025	9005025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357072)	promoter-TSS (NM_001357072)	198.0	NM_009412	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	373.55	323.47	228.46	381.22	329.35	304.64	337.98	329.41	212.96
Merged-chr16-23274536-1	chr16	23274036	23275036	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-15934.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	12.01	13.82	7.4	23.62	11.2	22.51	9.51	7.96	22.48
Merged-chr5-113735703-3	chr5	113735211	113736211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010825)	promoter-TSS (NM_001010825)	-71.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	241.98	223.94	207.19	170.7	192.67	192.11	275.66	186.59	109.29
Merged-chr6-38354477-3	chr6	38353976	38354976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347122, exon 1 of 13)	5' UTR (NM_001347122, exon 1 of 13)	127.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	616.67	613.76	411.6	580.93	633.98	394.66	463.67	609.75	342.24
Merged-chr13-117028463-3	chr13	117027960	117028960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	28.6	18.89	12.95	24.96	14.0	24.11	23.24	11.5	13.12
Merged-chr2-121506640-3	chr2	121506148	121507148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030234)	promoter-TSS (NM_030234)	8.0	NM_026220	67532.0	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	13.16	32.72	24.97	18.22	19.13	24.92	52.81	40.24	36.85
Merged-chr13-47190174-3	chr13	47189687	47190687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3816.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	38.33	27.65	22.2	37.78	30.32	36.17	31.69	21.67	15.61
Merged-chr11-106066037-3	chr11	106065533	106066533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027346)	promoter-TSS (NM_027346)	-74.0	NM_027346	70207.0	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	116.13	102.29	59.2	124.15	116.63	93.24	82.38	132.65	75.57
Merged-chr15-6708342-3	chr15	6707849	6708849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-32.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	92.1	67.74	60.12	93.79	76.04	59.48	81.33	45.1	31.85
Merged-chr4-84079792-2	chr4	84079287	84080287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34908.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	18.31	16.13	33.3	20.24	16.33	24.11	2.11	2.65	1.25
Merged-chr1-191253827-3	chr1	191253328	191254328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29374.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	12.59	11.52	1.85	31.04	15.86	9.65	11.62	10.17	5.0
Merged-chr15-76069825-3	chr15	76069334	76070334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134089)	promoter-TSS (NM_134089)	-50.0	NM_001310542	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	54.92	64.05	87.87	61.4	39.19	62.7	67.6	58.81	56.83
Merged-chr2-14323376-3	chr2	14322886	14323886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 25 of 29)	RLTR17|LTR|ERVK	62383.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	40.04	59.44	27.75	49.25	43.39	37.78	34.85	31.84	38.1
Merged-chr17-31559077-3	chr17	31558584	31559584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-5689.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	64.07	62.67	46.25	49.25	38.72	77.97	51.75	48.2	44.34
Merged-chr10-19941362-3	chr10	19940866	19941866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6840.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	176.19	176.94	102.67	143.04	127.36	122.18	86.61	116.29	122.41
Merged-chr13-49252312-3	chr13	49251806	49252806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3600.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	14.3	10.6	4.62	16.87	20.99	29.74	15.84	19.01	23.73
Merged-chr17-29500091-1	chr17	29499591	29500591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9046.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	18.31	5.99	0.0	1.35	2.8	0.0	4.22	1.77	3.75
Merged-chr12-100529408-3	chr12	100528903	100529903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8581.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	37.76	27.65	17.57	39.13	37.32	49.03	49.64	40.24	21.86
Merged-chr10-8881913-3	chr10	8881416	8882416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4154.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	227.68	187.54	139.67	228.73	150.22	151.92	165.82	184.38	118.04
Merged-chr8-95335906-3	chr8	95335391	95336391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133954, intron 2 of 6)	intron (NM_133954, intron 2 of 6)	3607.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	43.48	37.32	26.82	36.43	26.12	37.78	40.14	55.27	24.36
Merged-chr4-19942410-3	chr4	19941899	19942899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19833.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	40.04	50.23	39.77	58.7	68.58	59.48	45.42	59.25	33.1
Merged-chr11-72207517-3	chr11	72207035	72208035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	-19.0	NM_026559	52700.0	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	60.07	74.19	49.02	62.07	68.58	49.03	62.31	48.64	43.09
Merged-chr17-71183456-3	chr17	71182925	71183925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	-107.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	199.65	127.18	124.87	219.96	138.09	129.41	172.16	96.39	98.68
Merged-chr1-75168843-6	chr1	75168315	75169315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026846)	promoter-TSS (NM_026846)	80.0	NM_026846	68818.0	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	143.01	146.99	142.44	120.77	117.56	143.88	136.25	112.75	70.57
Merged-chr7-140941850-3	chr7	140941338	140942338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153832, intron 1 of 11)	intron (NR_153832, intron 1 of 11)	447.0	NM_145387	212974.0	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	331.79	302.74	221.99	376.49	247.25	235.51	322.14	265.3	171.75
Merged-chr13-45288641-3	chr13	45288141	45289141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	17.73	8.29	2.77	20.92	4.67	11.25	5.28	9.29	6.25
Merged-chr11-22982280-3	chr11	22981792	22982792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144514)	promoter-TSS (NM_144514)	-8.0	NM_144514	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	45.76	57.6	60.12	55.33	74.17	67.52	73.93	83.13	42.47
Merged-chr13-49307755-3	chr13	49307279	49308279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	1429.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	128.14	126.25	88.8	118.75	108.23	112.53	143.64	158.74	118.04
Merged-chr7-5080150-3	chr7	5079631	5080631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252454)	promoter-TSS (NM_001252454)	-104.0	NM_010147	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	277.45	294.44	279.34	208.49	232.79	226.67	298.9	266.18	207.97
Merged-chr15-79433149-3	chr15	79432668	79433668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	8650.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	31.46	34.1	46.25	52.63	42.45	49.83	22.18	26.97	28.73
Merged-chrX-20418632-3	chrX	20418128	20419128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-7060.0	NM_199317	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	20.02	25.8	21.27	27.66	33.12	49.03	27.46	22.99	9.99
Merged-chr2-150828893-1	chr2	150828393	150829393	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 18 of 19)	intron (NM_153781, intron 18 of 19)	13677.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	20.02	17.51	0.0	13.49	9.8	8.04	9.51	9.73	7.49
Merged-chr19-31082818-3	chr19	31082322	31083322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-19.0	NM_031249	83410.0	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	87.52	89.85	51.8	72.87	69.04	76.36	81.33	74.73	31.85
Merged-chr12-79006824-3	chr12	79006329	79007329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	CpG	448.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	72.65	72.8	64.75	91.76	62.05	102.88	100.34	58.81	47.46
Merged-chr1-191396658-2	chr1	191396155	191397155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_144880, exon 1 of 13)	5' UTR (NM_144880, exon 1 of 13)	386.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	264.29	185.7	247.89	247.62	138.55	172.01	240.81	157.41	176.12
Merged-chr17-34151186-1	chr17	34150686	34151686	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010388)	TTS (NM_010388)	-2005.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	3.43	1.38	0.0	9.45	6.53	12.86	3.17	1.77	0.0
Merged-chr5-8623088-3	chr5	8622570	8623570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198620)	promoter-TSS (NM_198620)	-118.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	5.72	4.15	3.7	14.84	4.2	2.41	7.39	0.88	3.75
Merged-chr18-4032548-3	chr18	4032049	4033049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-133283.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	19.45	11.98	16.65	9.45	20.53	16.08	19.01	15.03	16.24
Merged-chr3-152346484-3	chr3	152346014	152347014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252486)	promoter-TSS (NM_001252486)	36.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	69.79	62.21	55.5	75.57	76.97	87.61	71.82	68.98	51.21
Merged-chr15-102625822-3	chr15	102625312	102626312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310070)	promoter-TSS (NM_001310070)	-348.0	NM_001310066	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	208.8	199.06	174.82	227.38	236.99	229.88	234.47	238.33	129.9
Merged-chr1-39576772-3	chr1	39576250	39577250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033135, intron 1 of 6)	CpG	597.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	277.45	252.05	226.61	298.23	194.07	273.29	284.11	217.99	188.61
Merged-chr10-121496785-3	chr10	121496282	121497282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-20532.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	103.54	98.15	49.95	120.1	93.3	117.35	69.71	69.86	53.08
Merged-chr9-108460564-3	chr9	108460069	108461069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	51.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	152.74	130.86	113.77	120.1	103.1	108.51	152.09	125.13	106.17
Merged-chr6-136809296-3	chr6	136808786	136809786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1038.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	384.99	368.17	276.56	330.61	307.9	221.85	265.1	376.73	199.22
Merged-chr11-88107545-3	chr11	88107017	88108017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	8371.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	7.44	5.07	11.1	10.8	4.67	0.0	11.62	12.82	9.99
Merged-chr2-181497104-3	chr2	181496599	181497599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-43.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	255.14	310.11	213.66	255.72	295.3	235.51	284.11	335.16	159.25
Merged-chr12-21286248-3	chr12	21285727	21286727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018813)	promoter-TSS (NM_018813)	57.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	127.57	173.72	172.04	124.15	166.54	157.54	152.09	183.94	131.15
Merged-chr6-51129847-3	chr6	51129341	51130341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140069.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	26.89	32.72	16.65	24.29	39.19	14.47	77.1	57.48	21.86
Merged-chr11-62551080-3	chr11	62550590	62551590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-81.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	384.99	411.94	289.51	387.29	412.86	278.11	358.05	422.27	184.24
Merged-chr1-36038947-3	chr1	36038462	36039462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29438.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.01	6.91	1.85	8.77	4.67	6.43	6.34	5.31	3.12
Merged-chr7-49251194-3	chr7	49250650	49251650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4961.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	24.6	23.04	30.52	35.09	38.72	36.97	16.9	18.13	14.99
Merged-chr10-24643042-3	chr10	24642566	24643566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308329, intron 24 of 24)	intron (NM_001308329, intron 24 of 24)	47624.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	165.32	181.55	101.74	205.79	190.34	155.93	188.0	195.88	101.8
Merged-chr6-30856140-3	chr6	30855641	30856641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149738, intron 10 of 24)	ORR1B1|LTR|ERVL-MaLR	40653.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	21.74	15.67	16.65	24.29	11.2	20.09	25.35	32.28	18.74
Merged-chr4-55532586-3	chr4	55532081	55533081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010637)	promoter-TSS (NM_010637)	-106.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	335.8	185.7	126.72	275.96	181.01	149.5	239.75	133.98	92.43
Merged-chr6-72737095-3	chr6	72736613	72737613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	MIRb|SINE|MIR	51932.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	92.1	88.47	37.0	63.42	48.52	61.09	199.62	208.26	79.32
Merged-chr15-57976083-3	chr15	57975576	57976576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9827.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	206.51	217.95	122.09	188.25	200.13	142.27	239.75	245.84	114.29
Merged-chr2-180119234-3	chr2	180118740	180119740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-126.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	173.9	135.01	145.22	149.11	148.35	163.97	157.37	134.86	72.45
Merged-chr4-72201055-3	chr4	72200562	72201562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	-169.0	NM_001285530	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	177.91	160.81	154.47	181.5	159.55	158.35	148.92	150.78	99.3
Merged-chr13-23551688-3	chr13	23551182	23552182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175655)	promoter-TSS (NM_175655)	-39.0	NM_175655	319157.0	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	79.52	91.24	83.25	68.15	60.65	82.79	84.49	105.24	91.81
Merged-chr17-33555612-3	chr17	33555084	33556084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053214)	promoter-TSS (NM_053214)	-123.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	113.27	107.82	101.74	66.8	62.98	61.09	67.6	93.3	63.7
Merged-chr16-87700042-3	chr16	87699559	87700559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1105.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	165.32	167.73	74.92	195.67	208.06	117.35	173.21	178.64	71.82
Merged-chr19-46395233-3	chr19	46394730	46395730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	CpG	505.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	134.43	141.92	113.77	89.06	89.1	82.79	149.98	145.47	99.92
Merged-chr2-112261936-3	chr2	112261440	112262440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025403)	promoter-TSS (NM_025403)	14.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	49.77	49.3	29.6	35.76	38.25	24.11	72.88	71.63	41.84
Merged-chr6-72552882-3	chr6	72552384	72553384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	3237.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	104.69	111.51	99.89	97.16	106.83	151.11	130.97	117.17	89.93
Merged-chr3-146150186-3	chr3	146149687	146150687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005846)	promoter-TSS (NM_001005846)	13.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	134.43	100.45	98.05	124.15	75.11	61.89	103.51	85.34	44.97
Merged-chr12-51704141-3	chr12	51703655	51704655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12241.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	32.04	36.4	14.8	43.18	28.46	20.09	40.14	30.51	23.11
Merged-chr12-82225967-3	chr12	82225450	82226450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	55934.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	112.69	158.51	56.42	145.74	128.76	90.83	138.36	144.59	103.67
Merged-chr3-20155675-3	chr3	20155181	20156181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013755)	promoter-TSS (NM_013755)	-565.0	NM_013755	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	17.73	13.36	1.85	15.52	18.19	10.45	10.56	14.59	8.12
Merged-chr8-25745192-3	chr8	25744693	25745693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	intron (NM_001361595, intron 7 of 15)	9087.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	13.73	19.81	18.5	28.34	14.46	37.78	15.84	11.94	12.49
Merged-chr17-23726396-3	chr17	23725912	23726912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023058)	promoter-TSS (NM_023058)	76.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	26.31	30.41	25.9	28.34	12.13	23.31	104.56	85.34	49.34
Merged-chr6-106800082-3	chr6	106799577	106800577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175357)	promoter-TSS (NM_175357)	10.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	122.99	123.95	68.45	111.33	92.37	87.61	153.15	104.79	59.33
Merged-chr18-36194042-3	chr18	36193534	36194534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	3126.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	60.07	78.79	62.9	43.86	34.06	53.85	38.02	40.68	39.97
Merged-chr1-52119380-3	chr1	52118891	52119891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357627)	promoter-TSS (NM_001357627)	-47.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	101.83	157.59	102.67	135.62	152.08	122.98	129.91	159.62	112.42
Merged-chr1-148920530-1	chr1	148920030	148921030	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1001909.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.72	5.07	1.85	5.4	4.67	8.04	3.17	3.54	5.0
Merged-chr7-145293427-3	chr7	145292940	145293940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7469.0	NM_145379	211577.0	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	30.32	43.77	46.25	29.01	27.99	53.05	26.4	26.09	44.97
Merged-chr2-166771500-5	chr2	166771006	166772006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Ala-GCY_|tRNA|tRNA	-22261.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	155.03	114.74	103.59	205.79	149.28	110.92	159.48	153.87	77.44
Merged-chr2-28517417-3	chr2	28516923	28517923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	4256.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	22.31	9.22	5.55	18.22	8.86	8.04	7.39	5.31	0.0
Merged-chr2-180678824-3	chr2	180678349	180679349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111965, intron 5 of 12)	intron (NR_111965, intron 5 of 12)	13199.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	16.02	15.67	16.65	14.17	7.0	28.94	3.17	7.52	6.87
Merged-chr11-51367474-3	chr11	51366979	51367979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	MLT1C|LTR|ERVL-MaLR	77559.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	11.44	17.51	4.62	21.59	13.53	7.23	31.69	9.73	6.25
Merged-chr13-9125385-3	chr13	9124871	9125871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	31490.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	130.43	102.75	95.27	116.73	90.04	84.4	146.81	138.84	68.07
Merged-chr10-75514458-3	chr10	75513953	75514953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	MTE2a|LTR|ERVL-MaLR	2928.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	62.35	58.52	48.1	70.85	50.85	49.03	91.89	107.45	40.59
Merged-chr19-12457556-3	chr19	12457035	12458035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3244.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	171.62	145.15	127.64	171.38	156.75	133.43	205.96	230.81	105.55
Merged-chr18-62047181-3	chr18	62046681	62047681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94106.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	155.03	152.52	80.47	151.81	92.37	113.33	118.29	128.23	73.69
Merged-chr6-72107984-3	chr6	72107489	72108489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	10381.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	65.21	61.75	54.57	56.0	48.98	43.4	78.16	70.3	42.47
Merged-chr7-29263807-1	chr7	29263307	29264307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	-15340.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	8.01	7.37	14.8	2.02	4.2	3.22	8.45	2.65	8.12
Merged-chr14-65100619-3	chr14	65100118	65101118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2512.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	40.04	55.29	41.62	42.51	27.99	49.83	48.58	44.22	66.82
Merged-chr19-5529540-3	chr19	5529052	5530052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19035.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	22.31	9.22	12.02	16.19	13.06	5.63	15.84	13.71	5.62
Merged-chr13-20108111-3	chr13	20107605	20108605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	17598.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	48.62	43.31	24.05	43.86	25.66	14.47	39.08	34.05	16.86
Merged-chr11-4714942-1	chr11	4714442	4715442	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026015, intron 1 of 5)	intron (NM_026015, intron 1 of 5)	10286.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	2.86	4.15	1.85	6.75	6.53	6.43	23.24	14.59	28.1
Merged-chr10-37141186-3	chr10	37140692	37141692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2266.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	120.13	105.06	86.02	101.21	75.11	113.33	98.23	93.3	104.92
Merged-chr9-105073190-1	chr9	105072690	105073690	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053159, intron 7 of 9)	L1MC4|LINE|L1	19922.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	13.16	6.91	6.47	4.72	8.4	12.06	4.22	3.54	9.99
Merged-chr11-68691318-1	chr11	68690818	68691818	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175260)	promoter-TSS (NM_175260)	-597.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	41.76	34.1	11.1	78.94	80.71	54.66	71.82	68.09	31.23
Merged-chr4-149774286-3	chr4	149773772	149774772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027460)	promoter-TSS (NM_027460)	-5.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	201.36	141.0	119.32	231.43	159.55	143.07	222.86	155.64	107.42
Merged-chr14-57665059-3	chr14	57664554	57665554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-98.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	127.0	121.65	152.62	114.03	107.3	176.83	148.92	90.2	104.3
Merged-chr10-99430888-3	chr10	99430373	99431373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	167642.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	26.31	16.13	10.17	25.64	22.86	19.29	11.62	8.84	6.25
Merged-chr2-68430822-3	chr2	68430317	68431317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	41164.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	17.16	8.29	3.7	15.52	9.8	9.65	13.73	12.82	11.87
Merged-chr11-3895187-3	chr11	3894681	3895681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026150)	promoter-TSS (NM_026150)	-55.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	80.66	55.29	11.1	87.71	45.25	18.49	19.01	16.8	12.49
Merged-chr2-75704636-3	chr2	75704142	75705142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010902)	promoter-TSS (NM_010902)	21.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	433.04	297.21	277.49	396.06	389.53	278.91	292.56	334.28	180.49
Merged-chr8-125558843-3	chr8	125558328	125559328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	11035.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	60.64	56.68	34.22	86.36	35.45	53.85	72.88	57.04	58.08
Merged-chr2-72196719-1	chr2	72196219	72197219	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	ID_B1|SINE|B4	-88918.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	1.72	7.83	1.85	3.37	2.8	1.61	19.01	15.48	13.74
Merged-chr2-93461982-3	chr2	93461432	93462432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271461)	promoter-TSS (NM_001271461)	-81.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	293.46	250.21	137.82	250.32	168.41	107.71	167.93	140.17	64.95
Merged-chr12-108639348-3	chr12	108638859	108639859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	3606.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	247.7	273.25	135.97	203.76	213.66	161.56	208.07	244.08	137.4
Merged-chr10-98744340-3	chr10	98743853	98744853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170289.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	133.86	126.25	55.5	104.58	79.77	46.62	67.6	90.2	65.58
Merged-chr3-79542752-3	chr3	79542269	79543269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	24910.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	22.88	16.59	9.25	31.04	15.86	14.47	24.29	10.17	12.49
Merged-chr9-53700623-3	chr9	53700115	53701115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	5617.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	73.22	89.85	68.45	72.19	73.24	78.77	80.27	85.78	53.08
Merged-chr18-82909848-3	chr18	82909360	82910360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1019.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	98.39	71.42	41.62	138.99	86.77	94.04	108.79	78.71	39.35
Merged-chr2-71873127-3	chr2	71872562	71873562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172665)	promoter-TSS (NM_172665)	-162.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	46.91	35.48	31.45	55.33	49.45	48.23	91.89	80.03	37.47
Merged-chr19-6341123-3	chr19	6340650	6341650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291787)	promoter-TSS (NM_001291787)	-10.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	88.1	64.05	64.75	64.77	59.25	77.97	85.55	81.8	30.6
Merged-chr8-30936269-1	chr8	30935769	30936769	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-153258.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	1.14	2.3	3.7	2.02	1.87	0.0	28.52	13.27	14.36
Merged-chr11-69368162-3	chr11	69367660	69368660	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	1266.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	177.91	159.89	173.89	180.15	179.14	176.03	231.3	246.73	115.54
Merged-chr1-131384649-3	chr1	131384149	131385149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-105086.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	98.39	92.16	59.2	112.0	79.77	74.75	64.43	78.71	71.82
Merged-chr8-115429711-3	chr8	115429200	115430200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277194.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	33.75	29.49	17.57	33.06	28.92	50.64	27.46	32.28	40.59
Merged-chr8-22192853-3	chr8	22192348	22193348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027338)	promoter-TSS (NM_027338)	-12.0	NM_027338	70160.0	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	89.81	74.65	60.12	89.74	71.84	77.97	71.82	59.69	51.84
Merged-chr7-123377935-3	chr7	123377426	123378426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025304)	promoter-TSS (NM_025304)	-56.0	NM_025304	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	42.33	42.85	44.4	35.76	38.72	49.03	42.25	38.03	41.84
Merged-chr2-25228702-3	chr2	25228145	25229145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_080854)	TTS (NM_080854)	-3943.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	48.05	35.48	37.0	43.18	29.86	24.92	26.4	26.97	17.49
Merged-chr12-102426542-3	chr12	102426050	102427050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	13263.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	94.96	76.03	33.3	82.32	76.51	78.77	81.33	67.21	31.23
Merged-chr2-33371472-3	chr2	33370957	33371957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290572)	promoter-TSS (NM_001290572)	37.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	6.86	17.97	37.0	20.24	14.0	8.04	23.24	13.71	11.24
Merged-chr7-127274109-3	chr7	127273635	127274635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-76.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	209.94	197.22	135.04	234.8	208.53	118.96	213.35	205.17	61.83
Merged-chr1-93119019-3	chr1	93118523	93119523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16217.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	135.58	82.02	82.32	116.05	98.43	76.36	109.84	94.18	49.96
Merged-chr1-143803745-3	chr1	143803228	143804228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019562, intron 10 of 10)	intron (NM_019562, intron 10 of 10)	26450.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	12.59	7.83	2.77	6.07	7.46	10.45	2.11	4.86	5.0
Merged-chr12-103388687-3	chr12	103388178	103389178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026580)	promoter-TSS (NM_026580)	-3.0	NM_026580	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	26.31	17.97	16.65	28.34	19.59	20.9	35.91	23.88	6.87
Merged-chr10-4107840-3	chr10	4107323	4108323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	105297.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	48.05	35.94	19.42	52.63	40.59	60.28	9.51	2.65	6.25
Merged-chr17-26498456-1	chr17	26497956	26498956	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	10016.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	84.66	71.88	60.12	86.36	72.31	77.16	68.65	45.99	53.08
Merged-chr3-138526376-3	chr3	138525857	138526857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035481)	promoter-TSS (NR_035481)	-64.0	NR_035481	100316706.0		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	409.59	422.54	248.81	404.16	443.65	289.36	353.82	459.41	188.61
Merged-chr2-73892807-3	chr2	73892285	73893285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284376)	promoter-TSS (NM_001284376)	-146.0	NM_001284370	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	89.81	71.88	69.37	73.54	78.37	66.71	85.55	74.28	54.33
Merged-chr11-46830545-3	chr11	46830043	46831043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	MLTR14|LTR|ERV1	19744.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	72.65	85.25	80.47	76.92	63.45	87.61	74.99	72.52	39.97
Merged-chr2-29869101-3	chr2	29868623	29869623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207298)	promoter-TSS (NM_207298)	-371.0	NM_207298	99151.0	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	25.17	13.82	21.27	43.18	27.52	23.31	3.17	7.52	8.74
Merged-chr17-88458275-3	chr17	88457772	88458772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	17568.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	9.15	6.91	11.1	12.14	6.06	19.29	9.51	8.4	9.99
Merged-chr10-94356952-3	chr10	94356475	94357475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45026.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	304.9	297.21	239.56	321.17	241.18	200.95	314.74	364.79	166.12
Merged-chr1-55507271-3	chr1	55506770	55507770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	101324.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	169.33	177.86	93.42	154.51	139.02	105.3	126.74	175.98	69.32
Merged-chr11-49237806-3	chr11	49237310	49238310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6381.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	94.39	132.25	61.05	76.24	67.64	98.06	79.21	76.05	62.45
Merged-chr17-84072054-3	chr17	84071564	84072564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	27.46	33.18	42.55	49.93	24.72	55.46	50.7	42.01	28.73
Merged-chr17-24205569-3	chr17	24205054	24206054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	8.0	NM_001163851	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	64.07	33.64	37.0	64.1	42.92	73.14	81.33	44.66	31.85
Merged-chr12-12294549-3	chr12	12294047	12295047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	32408.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	162.46	173.25	78.62	160.58	134.82	114.94	168.99	186.59	101.8
Merged-chr10-79877890-3	chr10	79877383	79878383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1784.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	58.35	68.2	52.72	48.58	46.18	70.73	80.27	80.92	58.08
Merged-chr18-80319366-3	chr18	80318877	80319877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	44877.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	18.31	21.2	21.27	36.43	14.0	31.35	26.4	25.2	9.99
Merged-chr4-88757683-2	chr4	88757162	88758162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243150)	promoter-TSS (NM_001243150)	-182.0	NM_001243150	100041062.0	Mm.489587	NM_001243150		Gm13286	-	predicted gene 13286	protein-coding	52.63	67.74	74.92	0.0	0.0	0.0	52.81	55.27	56.21
Merged-chr2-122765368-3	chr2	122764860	122765860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162503)	promoter-TSS (NM_001162503)	1.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	122.42	117.96	104.52	126.17	120.36	117.35	137.3	153.43	91.18
Merged-chr11-86734397-3	chr11	86733903	86734903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 2 of 31)	intron (NM_001003908, intron 2 of 31)	23164.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	126.42	155.28	47.17	134.27	70.44	85.2	102.45	136.63	71.2
Merged-chr12-72664816-3	chr12	72664327	72665327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	1.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	51.48	59.44	35.15	40.48	55.98	55.46	54.92	73.84	28.1
Merged-chr3-102715414-3	chr3	102714876	102715876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19394.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	49.2	35.48	27.75	26.99	27.06	36.17	28.52	19.01	27.48
Merged-chr1-131184532-3	chr1	131184021	131185021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	15664.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	24.6	12.9	12.02	14.17	13.06	13.66	14.79	8.84	21.23
Merged-chr7-30421684-3	chr7	30421173	30422173	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360906)	promoter-TSS (NM_001360906)	-58.0	NM_001360906	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	470.23	463.09	335.76	421.7	381.14	411.54	377.06	528.83	239.19
Merged-chr19-46330171-3	chr19	46329667	46330667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133694, exon 4 of 4)	exon (NM_133694, exon 4 of 4)	1983.0	NM_133694	68431.0	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	12.59	10.14	7.4	10.8	5.13	16.08	24.29	14.15	13.74
Merged-chr3-88607598-3	chr3	88607104	88608104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8603.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	96.11	49.76	56.42	112.68	66.71	56.27	76.05	57.04	29.98
Merged-chr15-73090373-3	chr15	73089887	73090887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-25.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	395.29	412.4	235.86	346.13	330.29	249.17	312.63	367.88	202.35
Merged-chr12-16811073-3	chr12	16810588	16811588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027677, exon 1 of 8)	non-coding (NR_027677, exon 1 of 8)	123.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	32.61	16.59	22.2	35.76	43.85	45.82	30.63	9.73	14.99
Merged-chr11-29692828-3	chr11	29692335	29693335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-63.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	170.47	198.6	133.19	155.86	132.02	139.06	100.34	108.33	99.92
Merged-chr3-95653840-3	chr3	95653367	95654367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4854.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	229.97	227.17	115.62	211.86	158.15	129.41	184.83	215.78	108.67
Merged-chr6-37262736-3	chr6	37262278	37263278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	37198.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	7.44	8.29	5.55	6.75	7.0	8.84	7.39	4.42	6.87
Merged-chr1-162547216-3	chr1	162546728	162547728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144877, intron 1 of 7)	intron (NM_144877, intron 1 of 7)	1117.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	55.49	72.34	75.85	66.8	82.11	109.32	87.66	110.1	58.08
Merged-chr10-77314900-3	chr10	77314401	77315401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024838, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	55601.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	81.8	45.62	46.25	94.46	47.58	44.21	70.76	61.02	19.98
Merged-chr8-126548053-3	chr8	126547521	126548521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45415.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	40.62	17.05	49.02	58.03	32.19	40.99	24.29	15.48	8.74
Merged-chr7-47008448-3	chr7	47007930	47008930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175318)	promoter-TSS (NM_175318)	-16.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	385.56	398.58	235.86	339.38	326.09	235.51	352.77	422.71	159.25
Merged-chr17-30576414-3	chr17	30575916	30576916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027060)	promoter-TSS (NM_027060)	-129.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	1186.44	1197.12	1067.4	339.38	323.29	284.54	396.07	334.72	176.74
Merged-chr9-90034126-3	chr9	90033617	90034617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20150.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	41.76	39.63	47.17	41.83	22.86	24.11	78.16	84.45	47.46
Merged-chr3-35932433-3	chr3	35931945	35932945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205362)	promoter-TSS (NM_001205362)	-111.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	140.15	120.73	147.99	157.88	116.16	116.55	178.5	102.58	73.07
Merged-chr12-41290007-3	chr12	41289503	41290503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	196054.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	34.32	58.52	33.3	39.81	32.19	35.37	57.03	66.77	32.48
Merged-chr10-79855079-3	chr10	79854602	79855602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029447)	promoter-TSS (NR_029447)	-131.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	306.05	320.71	340.38	361.65	342.42	265.25	362.27	428.46	190.48
Merged-chr14-14294675-3	chr14	14294174	14295174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33439.0	NM_147027	18330.0	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	35.47	35.48	14.8	43.86	21.46	25.72	26.4	21.22	5.0
Merged-chr1-16657105-3	chr1	16656600	16657600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037998)	promoter-TSS (NR_037998)	19.0	NM_001310470	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	157.31	226.25	142.44	205.11	154.41	155.13	161.6	190.13	124.28
Merged-chr4-62525394-3	chr4	62524859	62525859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177607)	promoter-TSS (NM_177607)	-10.0	NM_001356420	214106.0	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	30.32	39.17	42.55	24.29	32.66	34.56	58.09	40.68	22.48
Merged-chr10-69252572-1	chr10	69252072	69253072	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	39378.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	110.98	182.01	128.57	123.47	108.7	102.08	101.39	154.32	104.92
Merged-chr11-70787201-3	chr11	70786705	70787705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	22758.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	240.26	190.3	104.52	196.34	132.95	151.92	203.84	188.81	92.43
Merged-chr3-127796492-3	chr3	127795994	127796994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	5837.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	58.92	47.46	40.7	45.88	41.99	49.83	34.85	29.18	23.73
Merged-chr1-134679638-3	chr1	134679126	134680126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	MLT1G1|LTR|ERVL-MaLR	-29674.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	9.72	7.37	1.85	15.52	5.13	8.04	11.62	12.38	12.49
Merged-chr13-99334217-3	chr13	99333738	99334738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 4 of 9)	RMER16_Mm|LTR|ERVK	10440.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	82.38	94.46	67.52	65.45	78.37	60.28	98.23	107.0	53.71
Merged-chr10-54112718-2	chr10	54112213	54113213	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36791.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	14.87	28.57	11.1	26.99	14.46	28.13	23.24	19.9	9.99
Merged-chr2-152831484-4	chr2	152831012	152832012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289717)	promoter-TSS (NM_001289717)	216.0	NM_009743	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	263.72	255.27	196.09	228.05	248.18	160.76	194.34	254.25	115.54
Merged-chr18-67774830-3	chr18	67774317	67775317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039088)	promoter-TSS (NM_001039088)	-59.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	196.79	166.8	226.61	193.64	138.09	213.0	250.32	195.44	108.04
Merged-chr4-86748513-3	chr4	86748022	86749022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_184088)	promoter-TSS (NM_184088)	-33.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	70.36	63.13	50.87	84.34	56.45	57.87	57.03	46.87	34.35
Merged-chr11-67025069-3	chr11	67024588	67025588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-66.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	30.32	26.73	29.6	15.52	24.26	28.13	26.4	31.39	14.99
Merged-chr7-43444038-3	chr7	43443543	43444543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026695)	promoter-TSS (NM_026695)	-29.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	170.47	167.73	182.22	167.33	173.07	190.5	160.54	190.57	149.89
Merged-chr9-19622110-3	chr9	19621614	19622614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172918)	promoter-TSS (NM_172918)	23.0	NR_153375	244713.0	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	69.79	103.68	21.27	72.19	80.71	57.07	74.99	88.88	44.97
Merged-chr10-122679434-3	chr10	122678929	122679929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106182)	TTS (NR_106182)	114.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	450.21	437.28	330.21	512.11	458.58	319.1	436.2	444.38	271.67
Merged-chr17-33685471-3	chr17	33684965	33685965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029804)	promoter-TSS (NM_029804)	-7.0	NM_029804	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	403.3	480.14	319.11	383.24	540.68	282.13	361.22	465.6	237.32
Merged-chr18-11915697-1	chr18	11915197	11916197	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146287, intron 4 of 9)	intron (NM_001146287, intron 4 of 9)	-75259.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	3.43	1.38	5.55	4.05	5.13	3.22	3.17	2.21	3.75
Merged-chr6-34780620-4	chr6	34780098	34781098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289657, exon 1 of 19)	5' UTR (NM_001289657, exon 1 of 19)	166.0	NM_001289656	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	210.52	189.84	154.47	195.67	153.48	127.8	191.17	140.17	101.8
Merged-chr18-10617818-3	chr18	10617324	10618324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009226)	promoter-TSS (NM_009226)	28.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	191.64	210.12	158.17	148.44	188.47	122.18	200.68	136.19	91.81
Merged-chr6-71198112-3	chr6	71197610	71198610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1769.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	98.97	113.81	55.5	106.61	112.9	78.77	91.89	101.7	52.46
Merged-chr6-86669411-3	chr6	86668887	86669887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010751)	promoter-TSS (NM_010751)	-228.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	156.74	106.9	111.92	133.59	84.44	103.69	129.91	109.22	62.45
Merged-chr8-75089743-3	chr8	75089229	75090229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3889.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	126.42	145.61	125.79	159.91	122.23	132.63	137.3	180.4	89.93
Merged-chr15-79694675-3	chr15	79694181	79695181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013818, intron 2 of 11)	intron (NM_013818, intron 2 of 11)	3785.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	29.75	24.42	47.17	12.82	10.26	20.9	41.19	47.75	36.85
Merged-chr13-62653237-3	chr13	62652742	62653742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29060.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	15.45	28.11	28.67	25.64	24.72	35.37	19.01	21.22	22.48
Merged-chr17-81480912-3	chr17	81480410	81481410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257477.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	43.48	39.17	40.7	43.18	41.99	34.56	46.47	47.75	20.61
Merged-chr1-65113707-3	chr1	65113187	65114187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	9527.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	149.88	136.39	86.02	222.66	250.98	207.38	234.47	317.92	129.9
Merged-chr11-83662459-3	chr11	83661983	83662983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013652)	promoter-TSS (NM_013652)	-101.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	192.78	164.04	122.09	237.5	224.86	175.23	142.59	176.42	96.18
Merged-chr13-105300138-3	chr13	105299628	105300628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5643.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	124.71	102.29	82.32	91.09	56.45	98.87	88.72	91.97	73.07
Merged-chr14-102810516-3	chr14	102810029	102811029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172103.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	99.54	118.42	78.62	94.46	74.64	101.28	102.45	109.22	99.92
Merged-chr18-12168015-3	chr18	12167546	12168546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029623)	promoter-TSS (NM_029623)	-684.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	106.4	146.07	113.77	102.56	114.76	102.08	179.55	142.38	100.55
Merged-chr18-12128630-3	chr18	12128117	12129117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024182)	promoter-TSS (NM_024182)	-233.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	101.25	129.48	114.69	96.48	90.97	117.35	127.8	138.4	100.55
Merged-chr2-156393909-3	chr2	156393407	156394407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024329)	promoter-TSS (NR_024329)	-928.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	134.43	90.31	69.37	101.88	52.25	49.83	141.53	133.53	52.46
Merged-chr14-31573127-3	chr14	31572636	31573636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009937, intron 1 of 16)	intron (NM_009937, intron 1 of 16)	4247.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	4.0	4.15	12.95	13.49	4.2	11.25	10.56	4.86	13.74
Merged-chr11-23665946-3	chr11	23665448	23666448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	-13.0	NM_023651	72129.0	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	370.12	361.72	263.61	388.64	344.28	285.34	333.75	346.66	181.74
Merged-chr2-22864872-3	chr2	22864363	22865363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-30659.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	12.59	15.67	16.65	12.14	13.06	4.02	15.84	9.73	5.0
Merged-chr3-9826337-3	chr3	9825843	9826843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	7336.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.59	11.52	12.95	18.89	12.6	7.23	24.29	29.18	23.11
Merged-chr5-142794788-3	chr5	142794294	142795294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	22593.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	101.25	97.23	95.27	101.88	73.24	113.33	136.25	95.95	87.43
Merged-chr11-99165111-3	chr11	99164593	99165593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10016.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	128.71	109.67	80.47	110.65	56.91	85.2	137.3	148.57	78.07
Merged-chr10-98878456-3	chr10	98877955	98878955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-36187.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	165.9	179.71	88.8	185.55	122.23	139.06	140.47	175.98	98.68
Merged-chr13-22051072-3	chr13	22050549	22051549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7819.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	38.9	37.78	14.8	35.09	24.72	22.51	31.69	26.97	18.74
Merged-chr13-106936933-3	chr13	106936427	106937427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029665)	promoter-TSS (NM_029665)	31.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	66.36	64.05	49.02	75.57	46.18	67.52	70.76	64.56	24.98
Merged-chr2-164878021-1	chr2	164877521	164878521	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	16.59	18.89	5.55	13.49	13.06	16.88	53.87	49.08	44.34
Merged-chr4-139493820-3	chr4	139493326	139494326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36722.0	NM_183148	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	36.61	54.37	37.92	39.13	28.46	46.62	45.42	33.16	25.61
Merged-chr7-105746593-3	chr7	105746082	105747082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009906, exon 13 of 13)	3' UTR (NM_009906, exon 13 of 13)	-2244.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	61.21	48.38	46.25	47.9	25.19	30.54	58.09	85.34	46.84
Merged-chr3-9879674-2	chr3	9879162	9880162	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45983.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.87	11.52	5.55	16.87	18.19	12.86	49.64	34.93	28.1
Merged-chr11-50197098-1	chr11	50196598	50197598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026543, intron 5 of 6)	intron (NM_026543, intron 5 of 6)	13722.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	5.15	4.15	11.1	1.35	3.27	6.43	3.17	2.65	6.25
Merged-chr11-3173876-6	chr11	3173287	3174287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	polypurine|Low_complexity|Low_complexity	19676.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	320.35	669.52	404.2	730.04	1124.75	1263.56	195.39	152.99	564.57
Merged-chr4-147809800-3	chr4	147809303	147810303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127189)	promoter-TSS (NM_001127189)	-15.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	84.66	101.83	74.0	64.77	57.85	111.73	156.32	114.52	87.43
Merged-chrX-48429737-3	chrX	48429235	48430235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	33397.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	29.75	33.18	40.7	35.76	19.13	21.7	32.74	37.14	14.36
Merged-chr7-141372345-3	chr7	141371840	141372840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7230.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	110.41	135.47	95.27	122.8	119.89	130.21	115.12	128.67	87.43
Merged-chr16-11461708-3	chr16	11461178	11462178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	56030.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	177.91	170.03	100.82	233.45	209.46	176.03	209.12	230.37	113.04
Merged-chr9-90113832-3	chr9	90113327	90114327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	intron (NM_001039147, intron 1 of 12)	993.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	399.87	380.61	306.16	350.85	313.96	325.53	317.91	342.68	226.08
Merged-chr6-54946708-3	chr6	54946213	54947213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 3 of 11)	intron (NM_001171007, intron 3 of 11)	24948.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	107.55	109.21	91.57	103.91	70.44	81.99	80.27	98.6	83.69
Merged-chr11-78328389-3	chr11	78327887	78328887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-35.0	NM_201406	276846.0	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	88.1	70.04	43.47	62.75	90.97	61.89	89.78	89.76	43.09
Merged-chr18-57660083-3	chr18	57659596	57660596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	-21511.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	16.02	19.81	7.4	20.24	15.39	9.65	43.3	30.07	11.87
Merged-chr9-96483863-3	chr9	96483361	96484361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5186.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	14.87	12.44	6.47	28.34	21.46	49.03	33.8	23.43	12.49
Merged-chr16-91597807-3	chr16	91597305	91598305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030018)	promoter-TSS (NM_030018)	-125.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	83.52	41.93	37.0	84.34	31.26	60.28	87.66	41.56	19.36
Merged-chr15-55547323-3	chr15	55546828	55547828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 3 of 6)	intron (NM_026759, intron 3 of 6)	9984.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	5.72	10.14	5.55	8.77	3.73	3.22	12.67	4.42	9.37
Merged-chr3-84772064-3	chr3	84771562	84772562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43515.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	113.84	95.84	52.72	184.2	147.42	121.37	159.48	172.89	69.32
Merged-chr4-141271839-3	chr4	141271355	141272355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6584.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	118.42	122.57	116.54	161.93	114.76	175.23	171.1	158.3	103.05
Merged-chr4-40268568-3	chr4	40268070	40269070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134097, intron 1 of 2)	CpG-9801	-1009.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	151.59	195.37	134.12	160.58	163.74	149.5	164.76	209.59	106.17
Merged-chr7-66135832-3	chr7	66135334	66136334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26319.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	118.42	174.64	129.49	141.02	113.36	137.45	164.76	173.77	118.66
Merged-chr5-92525107-3	chr5	92524552	92525552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19395.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	39.47	55.29	35.15	42.51	57.85	39.39	59.15	66.33	33.72
Merged-chr16-91820487-3	chr16	91820017	91821017	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 13 of 39)	exon (NM_010587, exon 13 of 39)	91146.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	28.6	20.27	6.47	29.01	16.33	29.74	16.9	38.03	20.61
Merged-chr11-83964368-3	chr11	83963867	83964867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194341)	promoter-TSS (NM_194341)	-64.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	24.6	13.82	23.12	41.16	16.79	22.51	39.08	19.9	16.86
Merged-chr14-30974353-3	chr14	30973841	30974841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011849, exon 8 of 15)	exon (NM_011849, exon 8 of 15)	22964.0	NM_011849	23955.0	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	36.04	35.02	29.6	35.09	32.66	50.64	25.35	33.6	33.1
Merged-chr6-82774524-3	chr6	82774030	82775030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013820)	promoter-TSS (NM_013820)	-76.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	177.91	175.1	123.02	212.54	251.91	156.74	254.54	298.02	113.66
Merged-chr3-40799965-3	chr3	40799450	40800450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173169)	promoter-TSS (NM_173169)	-1.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	171.62	180.17	131.34	124.82	117.09	113.33	163.71	153.87	105.55
Merged-chr7-135705998-3	chr7	135705510	135706510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 6 of 13)	intron (NM_001081117, intron 6 of 13)	10369.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	128.71	154.36	106.37	107.28	88.64	104.49	104.56	125.58	93.05
Merged-chr19-56801471-3	chr19	56800956	56801956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170757, intron 6 of 14)	intron (NM_170757, intron 6 of 14)	12227.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	60.64	78.79	53.65	107.28	82.57	79.58	38.02	39.35	38.1
Merged-chr5-25499127-3	chr5	25498636	25499636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081383)	promoter-TSS (NM_001081383)	-353.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	334.65	367.24	347.78	279.33	349.88	270.07	269.33	311.29	206.09
Merged-chr11-110986295-3	chr11	110985798	110986798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	-11189.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	131.57	118.88	61.05	117.4	80.71	53.85	107.73	121.6	80.56
Merged-chr18-12974098-5	chr18	12973567	12974567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357396)	promoter-TSS (NM_001357396)	-393.0	NM_001357396	16210.0	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	308.34	260.8	122.09	271.91	260.31	176.83	227.08	266.18	129.9
Merged-chr11-11547280-1	chr11	11546780	11547780	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58014.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	4.0	6.91	2.77	7.42	2.8	3.22	10.56	3.1	9.37
Merged-chr14-56571924-3	chr14	56571422	56572422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014996)	promoter-TSS (NM_001014996)	-76.0	NM_001014996	219103.0	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	20.02	19.35	25.9	24.29	20.06	28.94	22.18	12.82	16.24
Merged-chr4-155705556-3	chr4	155705057	155706057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	CpG	742.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	625.25	627.13	416.23	616.02	648.45	349.65	482.68	522.2	306.64
Merged-chr14-46882786-3	chr14	46882297	46883297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028966)	promoter-TSS (NM_028966)	-168.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	225.39	182.93	161.87	213.89	190.8	157.54	177.44	205.17	146.76
Merged-chr2-92434574-1	chr2	92434074	92435074	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009963)	promoter-TSS (NM_009963)	-505.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	137.29	142.38	72.15	128.87	168.41	126.19	92.94	167.58	84.94
Merged-chr9-106203148-3	chr9	106202641	106203641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011876)	promoter-TSS (NM_011876)	33.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	63.5	49.76	61.05	60.05	42.92	77.16	43.3	44.22	29.35
Merged-chr2-103606016-3	chr2	103605515	103606515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	MIRb|SINE|MIR	39705.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	61.78	64.05	34.22	49.93	28.92	51.44	46.47	45.54	38.72
Merged-chr8-70544291-3	chr8	70543780	70544780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4605.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	242.55	259.42	170.19	247.62	212.26	176.03	163.71	199.86	116.16
Merged-chr19-57358544-3	chr19	57358063	57359063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	2336.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	77.23	69.58	66.6	69.5	52.72	80.38	61.26	51.73	51.21
Merged-chr11-121237115-3	chr11	121236590	121237590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026272)	promoter-TSS (NM_026272)	-146.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	220.81	208.74	123.02	186.22	155.35	147.9	201.73	197.65	126.15
Merged-chr4-53264000-3	chr4	53263505	53264505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	1487.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	52.63	58.06	30.52	82.99	53.65	34.56	34.85	39.8	11.24
Merged-chrX-9469355-3	chrX	9468840	9469840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007807)	promoter-TSS (NM_007807)	-16.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	155.6	148.37	61.05	168.68	136.69	79.58	152.09	177.75	66.2
Merged-chr5-36574771-3	chr5	36574271	36575271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7626.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	147.59	149.29	143.37	141.69	107.3	106.1	168.99	210.91	87.43
Merged-chr6-97212211-3	chr6	97211704	97212704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	1412.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	42.33	47.46	31.45	47.9	44.78	49.83	39.08	31.84	21.23
Merged-chr10-120201528-3	chr10	120201043	120202043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	54.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	56.06	49.3	22.2	76.24	73.71	70.73	152.09	67.21	73.07
Merged-chr13-54223448-3	chr13	54222955	54223955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 3 of 3)	intron (NR_153432, intron 3 of 3)	31322.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	10.87	12.44	1.85	11.47	7.0	6.43	10.56	11.94	5.0
Merged-chr11-120458089-3	chr11	120457615	120458615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025560)	promoter-TSS (NM_025560)	-14.0	NM_152807	67291.0	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	120.7	125.79	125.79	151.81	94.7	122.98	115.12	120.71	102.42
Merged-chr11-4986853-3	chr11	4986365	4987365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007454)	promoter-TSS (NM_007454)	41.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	90.96	91.7	42.55	85.01	94.23	89.22	77.1	45.1	28.1
Merged-chr19-29462652-3	chr19	29462141	29463141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	51722.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	173.33	166.34	107.29	192.97	151.62	137.45	185.89	181.73	102.42
Merged-chr16-81437664-3	chr16	81437129	81438129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010954, exon 4 of 16)	exon (NM_010954, exon 4 of 16)	236932.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	15.45	13.82	43.47	12.14	15.39	17.68	23.24	21.22	11.24
Merged-chr10-22354350-3	chr10	22353762	22354762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-7632.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	116.7	83.4	52.72	113.35	60.18	57.87	40.14	47.31	17.49
Merged-chr6-91473592-3	chr6	91473100	91474100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133928)	promoter-TSS (NM_133928)	-151.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	62.35	73.26	48.1	68.82	71.84	70.73	92.94	75.17	34.97
Merged-chr12-112581284-3	chr12	112580777	112581777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7507.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	56.63	45.16	38.85	70.17	34.99	34.56	74.99	51.29	18.74
Merged-chr5-118354314-3	chr5	118353812	118354812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109085.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	14.87	6.45	8.32	4.72	4.67	4.02	5.28	7.07	3.75
Merged-chr13-15850563-3	chr13	15850068	15851068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	Arthur1|DNA|hAT-Tip100	43325.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	23.45	31.33	39.77	24.96	27.06	20.09	44.36	36.26	36.85
Merged-chr7-80426536-3	chr7	80426041	80427041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21105.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	124.14	133.63	78.62	133.59	105.9	120.57	151.03	136.63	71.82
Merged-chr2-35109504-3	chr2	35109023	35110023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	31.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	214.52	197.22	187.77	268.54	191.27	188.09	233.42	228.6	148.64
Merged-chr1-89569212-3	chr1	89568720	89569720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	114409.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	43.48	36.86	34.22	86.36	72.78	93.24	23.24	23.43	31.23
Merged-chr6-115331180-3	chr6	115330668	115331668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-29783.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	26.31	25.34	24.05	39.81	28.92	24.11	20.07	22.55	21.23
Merged-chr4-32615339-3	chr4	32614828	32615828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122978)	promoter-TSS (NM_001122978)	-142.0	NM_001122978	26885.0	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	109.83	159.89	123.94	95.14	123.16	139.06	136.25	136.63	99.92
Merged-chr8-46842840-3	chr8	46842347	46843347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	103102.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	168.76	122.11	100.82	163.96	90.5	110.92	107.73	109.22	97.43
Merged-chr15-76899867-3	chr15	76899368	76900368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025536)	promoter-TSS (NM_025536)	-73.0	NM_025536	66398.0	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	45.76	38.71	71.22	41.16	39.19	45.82	53.87	34.93	56.83
Merged-chr6-124375589-3	chr6	124375045	124376045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11059.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	121.28	154.36	82.32	136.29	121.76	106.1	79.21	120.27	54.96
Merged-chr18-38232380-3	chr18	38231878	38232878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17820.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	17.16	24.88	12.02	29.01	24.72	26.53	20.07	38.91	21.23
Merged-chr7-99050119-3	chr7	99049615	99050615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	91029.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	139.58	96.3	37.92	155.86	68.58	55.46	70.76	84.9	38.1
Merged-chr4-125085164-3	chr4	125084681	125085681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290701)	promoter-TSS (NM_001290701)	47.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	45.19	36.4	46.25	40.48	40.12	65.11	50.7	25.65	29.35
Merged-chr6-145149232-3	chr6	145148736	145149736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361633, intron 4 of 16)	intron (NM_001361633, intron 4 of 16)	3761.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	7.44	11.52	21.27	14.17	19.13	14.47	7.39	10.61	5.0
Merged-chr2-102745400-3	chr2	102744908	102745908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153853, intron 1 of 1)	intron (NR_153853, intron 1 of 1)	1352.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	179.05	163.58	91.57	148.44	101.23	82.79	96.11	106.56	74.32
Merged-chr17-56162415-3	chr17	56161916	56162916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025566)	promoter-TSS (NM_025566)	-75.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	41.76	32.25	5.55	27.66	21.93	28.94	23.24	30.95	12.49
Merged-chr13-5804783-3	chr13	5804257	5805257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53335.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	271.73	286.61	110.07	251.67	273.84	163.97	210.18	267.95	150.51
Merged-chr4-132008376-3	chr4	132007863	132008863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	40715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	388.42	320.25	175.74	334.66	249.58	215.42	313.69	388.22	153.63
Merged-chr19-12464348-3	chr19	12463860	12464860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	3581.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	340.37	380.15	180.37	363.67	368.54	258.82	304.18	309.96	154.88
Merged-chr8-95488890-3	chr8	95488403	95489403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009974)	promoter-TSS (NM_009974)	-83.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	30.89	8.75	12.95	41.83	13.53	22.51	39.08	8.4	8.12
Merged-chr2-92008461-3	chr2	92007956	92008956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	CpG	15714.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	46.34	36.86	34.22	39.81	39.19	29.74	47.53	21.22	11.24
Merged-chr16-50096655-3	chr16	50096151	50097151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23799.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	45.19	43.77	46.25	65.45	29.39	32.96	51.75	48.64	28.1
Merged-chr9-67840332-3	chr9	67839876	67840876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-20.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	121.85	146.99	128.57	107.28	131.56	109.32	124.63	106.56	73.69
Merged-chr1-91413310-3	chr1	91412812	91413812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019479)	promoter-TSS (NM_019479)	-90.0	NM_001360899	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	48.62	42.85	29.6	55.33	62.51	68.32	63.37	44.66	31.85
Merged-chr17-56218930-3	chr17	56218433	56219433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	-44.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	69.22	63.13	89.72	53.3	32.19	72.34	108.79	41.12	51.84
Merged-chr7-139377586-3	chr7	139377075	139378075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11534.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	35.47	38.25	31.45	37.11	31.72	35.37	39.08	34.49	28.1
Merged-chr1-134557071-3	chr1	134556572	134557572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3106.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	21.74	11.98	9.25	22.94	22.39	16.08	22.18	26.09	20.61
Merged-chr17-70990103-3	chr17	70989612	70990612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	404.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	233.4	237.3	219.21	190.27	197.8	218.63	201.73	237.0	150.51
Merged-chr11-46076679-3	chr11	46076161	46077161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 3 of 22)	ORR1D1|LTR|ERVL-MaLR	20677.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	32.61	20.74	12.95	33.06	8.86	4.82	50.7	46.43	31.85
Merged-chr17-32284406-1	chr17	32283906	32284906	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198094)	promoter-TSS (NM_198094)	-273.0	NM_020508	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	633.26	364.94	375.53	468.93	231.85	278.91	415.08	200.74	222.33
Merged-chr3-79565109-3	chr3	79564621	79565621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	B1F1|SINE|Alu	2558.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	56.63	36.86	29.6	53.3	41.52	45.01	42.25	38.47	19.36
Merged-chr17-12755290-3	chr17	12754791	12755791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13980.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	161.89	146.07	78.62	151.14	177.27	126.19	205.96	224.18	91.18
Merged-chr3-98032389-3	chr3	98031894	98032894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	18856.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	29.75	31.33	22.2	51.28	25.19	35.37	44.36	25.2	21.23
Merged-chr3-107631741-3	chr3	107631236	107632236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153563)	promoter-TSS (NM_153563)	-26.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	88.67	95.38	81.4	77.59	66.71	106.9	73.93	69.86	36.85
Merged-chr6-37431531-3	chr6	37431020	37432020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	10628.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	50.91	48.38	23.12	45.21	32.66	32.96	44.36	28.74	22.48
Merged-chr16-76224817-3	chr16	76224310	76225310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102197.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	343.23	376.0	183.14	356.25	299.03	191.3	396.07	565.53	145.51
Merged-chr5-139404726-1	chr5	139404226	139405226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1661.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	463.94	361.25	269.16	503.34	434.79	330.36	399.24	488.15	204.22
Merged-chr17-47295931-3	chr17	47295413	47296413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	65683.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	112.12	112.43	74.0	135.62	110.1	107.71	102.45	88.43	63.08
Merged-chr17-23983036-3	chr17	23982533	23983533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7803.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	276.87	220.25	108.22	239.52	181.01	111.73	268.27	350.2	122.41
Merged-chr13-75893062-1	chr13	75892562	75893562	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028493, intron 7 of 11)	intron (NM_028493, intron 7 of 11)	50762.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.57	0.46	7.4	2.02	2.33	1.61	2.11	2.21	0.0
Merged-chr1-191906673-3	chr1	191906171	191907171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009579)	promoter-TSS (NM_009579)	-110.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	189.35	98.15	110.07	155.86	106.36	135.84	189.06	101.26	98.05
Merged-chr6-42299566-3	chr6	42299067	42300067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013491, exon 10 of 23)	exon (NM_013491, exon 10 of 23)	12882.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	21.74	7.83	11.1	25.64	9.33	12.86	11.62	11.94	12.49
Merged-chr2-118861914-3	chr2	118861409	118862409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019826)	promoter-TSS (NM_019826)	-91.0	NM_019826	56357.0	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	29.75	37.78	40.7	41.16	32.19	40.19	27.46	41.56	36.85
Merged-chr16-30938847-3	chr16	30938344	30939344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142588.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	19.45	9.68	8.32	6.07	9.33	3.22	3.17	5.75	6.25
Merged-chr1-57606430-1	chr1	57605930	57606930	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-168431.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	4.58	6.45	1.85	6.75	8.4	0.8	4.22	0.88	9.37
Merged-chr4-149076059-3	chr4	149075559	149076559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019781, exon 2 of 9)	exon (NM_019781, exon 2 of 9)	23753.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	21.17	8.75	11.1	15.52	7.0	3.22	10.56	4.42	12.49
Merged-chr9-7184536-3	chr9	7184043	7185043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357483)	promoter-TSS (NM_001357483)	38.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	256.28	240.53	205.34	240.87	207.6	192.11	230.25	206.05	113.66
Merged-chr7-101608064-3	chr7	101607590	101608590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26929.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	97.25	72.34	57.35	77.59	52.25	73.14	126.74	156.97	60.58
Merged-chr16-76309350-3	chr16	76308850	76309850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	63699.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	15.45	18.89	26.82	18.22	14.0	38.58	17.96	19.46	14.36
Merged-chr3-103213710-3	chr3	103213214	103214214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	42059.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	42.33	20.74	57.35	37.11	31.26	40.19	137.3	145.47	118.04
Merged-chr19-37439465-2	chr19	37438963	37439963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008245, intron 3 of 3)	intron (NM_008245, intron 3 of 3)	4622.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	48.62	55.29	59.2	45.21	34.99	40.99	10.56	7.96	8.74
Merged-chr8-70777269-3	chr8	70776778	70777778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008841)	promoter-TSS (NM_008841)	416.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	159.03	168.65	126.72	169.35	189.4	171.21	201.73	237.44	100.55
Merged-chr16-92675872-3	chr16	92675372	92676372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	21457.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	311.77	261.26	158.17	280.68	199.67	154.33	179.55	197.21	124.91
Merged-chr8-92840046-3	chr8	92839547	92840547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 8 of 12)	intron (NM_008610, intron 8 of 12)	12750.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	14.3	17.51	16.65	22.27	13.06	13.66	23.24	22.55	9.37
Merged-chr5-142938518-2	chr5	142938029	142939029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21826.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	10.3	5.53	7.4	5.4	7.93	7.23	3.17	2.21	9.99
Merged-chr15-62152352-3	chr15	62151844	62152844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	67107.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	94.39	90.31	86.02	97.16	52.25	80.38	142.59	121.15	55.58
Merged-chr7-16910134-3	chr7	16909642	16910642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008967, exon 2 of 2)	3' UTR (NM_008967, exon 2 of 2)	3652.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	13.16	15.21	5.55	16.19	10.26	17.68	7.39	7.96	6.87
Merged-chr13-80885634-3	chr13	80885142	80886142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153411)	promoter-TSS (NR_153411)	-453.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	733.37	617.91	355.18	769.18	741.75	429.22	515.42	719.41	292.28
Merged-chr16-52060532-3	chr16	52060020	52061020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28971.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	347.81	388.44	235.86	329.26	353.15	249.17	358.05	516.89	175.49
Merged-chr3-144700149-3	chr3	144699650	144700650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 6 of 10)	intron (NM_001282037, intron 6 of 10)	20185.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	101.83	102.29	84.17	114.7	73.24	56.27	90.83	118.94	75.57
Merged-chr5-108660793-3	chr5	108660308	108661308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199011)	promoter-TSS (NM_199011)	22.0	NM_001357029	110524.0	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	37.18	26.73	28.67	32.39	33.59	27.33	29.57	22.11	22.48
Merged-chr6-72835336-1	chr6	72834836	72835836	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46291.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.58	2.3	1.85	2.7	4.67	0.0	2.11	0.88	6.25
Merged-chr10-112928963-3	chr10	112928424	112929424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033474, exon 1 of 1)	5' UTR (NM_001033474, exon 1 of 1)	102.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	240.83	276.93	201.64	258.42	303.23	175.23	224.97	180.4	158.01
Merged-chr6-18848550-3	chr6	18848029	18849029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-106.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	208.8	241.45	106.37	215.91	170.28	136.64	211.24	255.57	97.43
Merged-chr5-24842783-3	chr5	24842285	24843285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-424.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	262.57	287.07	202.56	259.09	281.77	245.16	226.02	246.29	164.88
Merged-chr14-77795442-3	chr14	77794945	77795945	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033440, intron 2 of 2)	intron (NM_001033440, intron 2 of 2)	3523.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	64.64	54.37	34.22	53.98	48.05	59.48	96.11	104.79	57.46
Merged-chr14-73325934-3	chr14	73325445	73326445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-123.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	154.45	112.89	139.67	138.99	89.1	122.98	159.48	80.03	90.56
Merged-chr11-93885261-3	chr11	93884767	93885767	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134012)	promoter-TSS (NM_134012)	499.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	225.96	145.15	172.97	210.51	184.27	200.14	189.06	158.3	84.94
Merged-chr16-10416277-3	chr16	10415778	10416778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	4340.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	34.9	29.49	17.57	22.27	20.06	27.33	24.29	18.13	28.73
Merged-chr17-70990599-3	chr17	70990121	70991121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023402)	promoter-TSS (NM_023402)	-105.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	248.27	253.89	254.36	246.27	202.46	258.82	273.55	248.06	186.73
Merged-chr13-41097843-3	chr13	41097363	41098363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12125.0	NM_008104	107889.0	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2	protein-coding	20.02	11.98	7.4	14.17	17.26	13.66	11.62	13.27	12.49
Merged-chr10-20104606-3	chr10	20104064	20105064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-44356.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	81.8	66.35	65.67	87.71	71.84	57.07	54.92	58.37	56.83
Merged-chr1-74397480-3	chr1	74396983	74397983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153088)	TTS (NM_153088)	3173.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	207.08	118.42	135.04	180.15	118.96	159.15	217.57	151.22	113.66
Merged-chr12-70111973-3	chr12	70111482	70112482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	53.0	NM_001286080	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	145.87	132.71	155.39	138.32	112.9	162.37	125.69	86.22	84.31
Merged-chr3-96579929-2	chr3	96579440	96580440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027241, intron 6 of 7)	intron (NM_027241, intron 6 of 7)	-13139.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	90.96	77.87	61.05	107.28	40.59	67.52	109.84	99.49	69.32
Merged-chr11-120151363-3	chr11	120150868	120151868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164799)	promoter-TSS (NM_001164799)	-17.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	141.87	117.04	126.72	136.29	101.23	106.9	160.54	158.3	88.68
Merged-chr11-69685402-3	chr11	69684901	69685901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011614)	TTS (NM_011614)	153.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	241.98	229.93	207.19	229.4	168.88	227.47	240.81	266.18	138.02
Merged-chr4-136147027-3	chr4	136146517	136147517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3195.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	187.06	235.46	98.05	186.9	161.41	153.52	181.66	244.96	143.02
Merged-chr11-106500845-3	chr11	106500335	106501335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030703)	promoter-TSS (NR_030703)	-156.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	166.47	167.73	117.47	168.0	184.74	127.8	144.7	183.06	85.56
Merged-chr3-21934955-3	chr3	21934456	21935456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141696.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	75.51	99.53	59.2	86.36	79.77	57.87	105.62	135.3	38.72
Merged-chr9-21149954-3	chr9	21149450	21150450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016742)	promoter-TSS (NM_016742)	-44.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	56.06	48.38	43.47	29.01	41.52	43.4	45.42	48.2	26.23
Merged-chr2-15055151-3	chr2	15054647	15055647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029466)	promoter-TSS (NM_029466)	-215.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	282.59	255.27	118.39	258.42	241.65	143.07	253.48	275.03	113.66
Merged-chr3-65929987-3	chr3	65929480	65930480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28269.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	100.68	94.0	44.4	115.38	83.04	53.05	92.94	85.78	39.97
Merged-chr10-98896214-3	chr10	98895712	98896712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18430.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	139.01	143.76	55.5	201.07	116.63	108.51	114.07	137.51	69.32
Merged-chr13-107890172-3	chr13	107889665	107890665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145456)	promoter-TSS (NM_145456)	-101.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	159.6	94.0	106.37	138.32	71.84	86.01	145.75	99.49	78.69
Merged-chr1-44070370-3	chr1	44069868	44070868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32073.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	34.32	62.21	48.1	57.35	66.71	67.52	74.99	76.05	39.97
Merged-chr17-24724434-3	chr17	24723933	24724933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026684)	promoter-TSS (NM_026684)	-45.0	NM_026684	68342.0	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	132.14	67.27	116.54	91.09	55.05	80.38	105.62	108.77	61.2
Merged-chr15-74919740-2	chr15	74919263	74920263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35288.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	33.75	31.79	54.57	13.49	6.53	13.66	88.72	83.57	49.96
Merged-chr2-32713169-6	chr2	32712644	32713644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130860)	promoter-TSS (NM_130860)	-172.0	NR_039536	100628606.0		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	154.45	112.43	149.84	143.71	90.04	127.8	145.75	83.57	91.18
Merged-chr10-78086769-3	chr10	78086278	78087278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17410.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	78.37	48.84	33.3	68.15	45.72	55.46	79.21	56.6	48.71
Merged-chr8-40307890-3	chr8	40307337	40308337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106126)	promoter-TSS (NR_106126)	92.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	116.13	91.7	66.6	118.75	91.9	120.57	165.82	123.81	97.43
Merged-chr19-12024355-3	chr19	12023840	12024840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12400.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	18.31	23.96	12.95	29.01	20.99	24.11	33.8	26.09	30.6
Merged-chr5-62846934-3	chr5	62846436	62847436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	33113.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	164.75	179.25	119.32	170.7	133.42	110.12	126.74	122.92	86.18
Merged-chrX-101332599-3	chrX	101332082	101333082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33403.0	NM_172932	245537.0	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3|NLG3	neuroligin 3	protein-coding	93.24	102.29	93.42	91.09	68.58	90.83	106.67	97.28	76.19
Merged-chr17-37046025-3	chr17	37045567	37046567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019439, exon 1 of 23)	5' UTR (NM_019439, exon 1 of 23)	101.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	125.28	83.4	51.8	45.21	35.45	37.78	57.03	34.93	15.61
Merged-chr15-84321764-3	chr15	84321268	84322268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2952.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	24.03	5.99	10.17	20.92	11.66	20.09	19.01	7.96	4.37
Merged-chr18-56466638-3	chr18	56466138	56467138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	34506.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	50.34	64.05	52.72	49.93	38.25	84.4	61.26	60.13	49.96
Merged-chr2-6251326-3	chr2	6250832	6251832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 2 of 6)	intron (NR_040333, intron 2 of 6)	-38338.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	32.04	15.67	8.32	26.31	17.26	12.86	20.07	13.71	10.62
Merged-chr8-115420280-3	chr8	115419794	115420794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286600.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	47.48	41.93	31.45	43.18	17.26	16.08	24.29	26.97	24.98
Merged-chr9-66834849-3	chr9	66834335	66835335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-129.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	112.12	122.57	85.1	93.11	104.03	94.04	78.16	120.71	53.08
Merged-chr5-140749712-3	chr5	140749206	140750206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	25579.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	29.75	19.81	20.35	32.39	17.73	37.78	16.9	11.94	7.49
Merged-chr7-117486667-3	chr7	117486170	117487170	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	105691.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	29.75	46.08	54.57	36.43	52.25	62.7	22.18	15.03	34.97
Merged-chr11-94412681-1	chr11	94412181	94413181	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-19705.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	8.01	3.69	0.0	15.52	6.53	7.23	4.22	5.31	6.25
Merged-chr1-180601938-3	chr1	180601445	180602445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007415)	TTS (NM_007415)	14744.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	16.59	8.75	11.1	27.66	19.13	11.25	25.35	14.59	14.36
Merged-chr1-156028542-3	chr1	156028011	156029011	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	6306.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	98.39	92.62	74.0	116.05	104.03	108.51	114.07	95.95	76.19
Merged-chr10-94122758-3	chr10	94122251	94123251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25180.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	22.88	10.14	17.57	21.59	10.73	21.7	42.25	40.68	29.35
Merged-chr2-60821848-3	chr2	60821357	60822357	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59581.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	192.21	200.44	83.25	215.91	190.34	121.37	190.11	159.18	65.58
Merged-chr6-89413750-3	chr6	89413239	89414239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-51126.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	34.9	27.19	24.05	29.69	24.72	20.9	33.8	30.51	26.23
Merged-chr2-102401114-3	chr2	102400619	102401619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020267)	promoter-TSS (NM_020267)	-219.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	73.22	53.91	52.72	78.94	45.25	59.48	81.33	34.49	35.6
Merged-chr3-136331319-3	chr3	136330818	136331818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5252.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	27.46	27.65	7.4	22.27	15.39	23.31	25.35	22.11	13.74
Merged-chr9-40782188-3	chr9	40781707	40782707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 6 of 6)	intron (NM_133733, intron 6 of 6)	-19066.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	314.06	365.86	182.22	244.25	243.98	220.24	231.3	310.4	217.34
Merged-chr17-50504679-3	chr17	50504174	50505174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4873.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	82.95	53.91	38.85	62.07	29.86	40.19	54.92	50.85	24.98
Merged-chr7-19257545-3	chr7	19257055	19258055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104069, exon 11 of 11)	non-coding (NR_104069, exon 11 of 11)	14299.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	22.88	19.81	21.27	16.19	9.8	21.7	17.96	19.01	20.61
Merged-chr11-87086802-3	chr11	87086293	87087293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024262)	promoter-TSS (NM_024262)	-16.0	NM_024262	74133.0	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	110.98	97.69	103.59	128.87	118.03	118.96	129.91	129.55	80.56
Merged-chr11-59228243-3	chr11	59227715	59228715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130408)	promoter-TSS (NM_001130408)	52.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	675.02	556.63	416.23	645.7	537.88	373.76	511.19	533.7	252.31
Merged-chr8-25007980-3	chr8	25007482	25008482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	8940.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	57.21	75.11	81.4	58.7	58.31	36.97	57.03	55.27	37.47
Merged-chr10-53348500-3	chr10	53347983	53348983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001204983, exon 3 of 13)	exon (NM_001204983, exon 3 of 13)	10797.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	7.44	11.06	8.32	12.82	4.67	11.25	11.62	8.84	5.62
Merged-chr1-106553042-3	chr1	106552547	106553547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-6416.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.15	4.61	0.0	8.1	4.2	4.82	8.45	3.54	1.87
Merged-chr11-95842288-3	chr11	95841815	95842815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284397)	promoter-TSS (NM_001284397)	20.0	NM_001284393	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	97.25	103.22	99.89	147.76	86.3	131.02	199.62	165.81	87.43
Merged-chr8-105566089-3	chr8	105565594	105566594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-30.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	322.07	309.65	236.79	307.67	297.63	225.86	242.92	338.26	146.14
Merged-chr7-24254683-3	chr7	24254201	24255201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018791)	promoter-TSS (NM_018791)	-93.0	NM_018791	54678.0	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	10.87	16.13	25.9	15.52	15.39	31.35	15.84	10.17	22.48
Merged-chr9-7221644-3	chr9	7221157	7222157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37152.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	189.92	235.46	153.54	200.39	192.2	172.01	139.42	192.34	146.76
Merged-chr19-42089386-3	chr19	42088893	42089893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1042.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	171.04	160.35	138.74	157.88	134.82	117.35	161.6	238.33	124.91
Merged-chr3-69156638-3	chr3	69156126	69157126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	25393.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	200.79	234.54	111.92	196.34	200.6	153.52	258.77	316.59	137.4
Merged-chr12-40222662-3	chr12	40222124	40223124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045157)	promoter-TSS (NR_045157)	187.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	438.19	396.74	301.53	583.63	506.16	352.06	403.46	451.89	286.03
Merged-chr10-80695365-3	chr10	80694880	80695880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	6440.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	225.96	181.09	118.39	184.87	113.36	112.53	181.66	234.35	112.42
Merged-chr1-53785213-3	chr1	53784721	53785721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133810)	promoter-TSS (NM_133810)	-6.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	198.5	165.42	137.82	188.25	172.61	150.31	200.68	173.77	105.55
Merged-chr8-117339596-3	chr8	117339071	117340071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-9599.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	329.5	229.47	164.64	323.86	215.99	161.56	282.0	312.61	139.89
Merged-chr8-126828235-3	chr8	126827703	126828703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20817.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	300.33	271.4	184.07	311.72	223.46	222.65	260.88	341.35	138.02
Merged-chr1-172277340-3	chr1	172276832	172277832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178405, intron 20 of 22)	intron (NM_178405, intron 20 of 22)	-18908.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	44.62	71.42	51.8	58.03	37.32	39.39	26.4	32.72	11.87
Merged-chr13-89384833-3	chr13	89384329	89385329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-155807.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	266.58	240.07	69.37	97.83	97.03	48.23	278.83	355.06	126.78
Merged-chr8-88362160-3	chr8	88361649	88362649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	42.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	201.93	154.82	175.74	161.93	124.09	131.02	204.9	135.75	82.44
Merged-chr2-90847152-3	chr2	90846655	90847655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	0.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	197.36	172.79	147.07	216.58	217.39	172.01	182.72	235.68	94.93
Merged-chr5-122644361-3	chr5	122643866	122644866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 1 of 12)	intron (NM_001038845, intron 1 of 12)	455.0	NM_001038887	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	232.83	182.01	107.29	260.44	227.19	178.44	219.69	214.89	72.45
Merged-chr2-102186374-3	chr2	102185872	102186872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290784)	promoter-TSS (NM_001290784)	88.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.58	3.69	1.85	21.59	13.53	12.06	4.22	3.54	6.87
Merged-chr15-25269842-3	chr15	25269350	25270350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143914.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	211.66	155.75	88.8	221.98	187.54	132.63	145.75	191.46	75.57
Merged-chr13-67194523-3	chr13	67194026	67195026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048204)	promoter-TSS (NM_001048204)	20.0	NM_001048204	218311.0	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	46.91	57.14	42.55	64.1	56.45	62.7	84.49	63.67	30.6
Merged-chr1-60913178-3	chr1	60912687	60913687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281976, intron 2 of 2)	intron (NM_001281976, intron 2 of 2)	4162.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	55.49	43.31	38.85	29.01	16.33	17.68	38.02	31.39	24.36
Merged-chr2-170184768-3	chr2	170184275	170185275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42100.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	60.07	43.77	66.6	60.05	46.65	80.38	98.23	62.35	58.08
Merged-chr7-121075107-3	chr7	121074595	121075595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030691)	promoter-TSS (NM_030691)	-565.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	239.69	329.0	188.69	284.73	366.21	265.25	276.72	328.53	177.99
Merged-chr10-41809662-3	chr10	41809169	41810169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243075)	promoter-TSS (NM_001243075)	-6.0	NM_029132	103268.0	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	114.98	140.08	159.09	116.05	131.56	145.49	116.18	118.06	88.06
Merged-chr5-100038559-3	chr5	100038113	100039113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152866, intron 1 of 8)	CpG	609.0	NM_016690	50926.0	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	241.41	214.73	182.22	145.06	144.62	122.18	142.59	145.47	137.4
Merged-chrX-159737563-3	chrX	159737064	159738064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	L1MA6|LINE|L1	28963.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	42.9	38.71	18.5	42.51	34.99	24.92	40.14	47.75	14.36
Merged-chr4-57952563-3	chr4	57952113	57953113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3798.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	128.14	143.3	113.77	143.71	98.43	95.65	175.33	212.68	120.53
Merged-chr18-68194636-3	chr18	68194135	68195135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-33311.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	86.38	105.06	49.02	101.21	96.1	84.4	83.44	84.9	71.2
Merged-chr1-86440718-3	chr1	86440216	86441216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14387.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	50.91	30.87	18.5	64.1	25.19	46.62	70.76	43.33	38.1
Merged-chr17-17865381-3	chr17	17864875	17865875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10187.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	133.86	117.96	53.65	122.12	70.44	64.3	89.78	93.74	74.32
Merged-chr15-78928254-3	chr15	78927762	78928762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008495, intron 2 of 3)	intron (NM_008495, intron 2 of 3)	1537.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	76.66	58.06	45.32	75.57	69.04	81.99	31.69	26.09	22.48
Merged-chr16-62847079-3	chr16	62846587	62847587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026577)	promoter-TSS (NM_026577)	-47.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	177.34	157.59	50.87	147.09	105.43	53.05	120.41	103.02	56.83
Merged-chr15-7134752-1	chr15	7134252	7135252	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	5180.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	4.0	0.92	3.7	3.37	1.87	4.02	5.28	0.0	0.0
Merged-chr17-73027304-3	chr17	73026800	73027800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80685.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	93.82	83.86	55.5	82.32	85.37	77.97	57.03	72.96	37.47
Merged-chr16-25053086-3	chr16	25052568	25053568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6571.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	88.1	71.42	61.05	100.53	80.24	92.44	86.61	70.75	64.95
Merged-chr2-170325423-3	chr2	170324928	170325928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30933.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	109.83	87.09	93.42	98.51	61.11	70.73	89.78	91.97	86.81
Merged-chrX-36796412-3	chrX	36795915	36796915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007451, intron 1 of 3)	CpG	818.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	204.22	196.75	173.89	189.6	190.8	166.38	166.88	175.54	101.17
Merged-chr2-170511339-4	chr2	170510873	170511873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040367, exon 1 of 3)	non-coding (NR_040367, exon 1 of 3)	143.0	NM_001199902	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	211.09	146.07	99.89	187.57	168.88	151.92	198.56	176.87	83.69
Merged-chr10-7833795-3	chr10	7833280	7834280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	1310.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	192.78	230.39	187.77	226.03	181.94	141.47	176.38	209.59	114.29
Merged-chr1-165675325-3	chr1	165674819	165675819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	32775.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	136.72	96.76	93.42	149.11	64.38	87.61	120.41	81.36	74.32
Merged-chr4-40840623-3	chr4	40840113	40841113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	9525.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	114.41	88.01	63.82	90.41	74.64	64.3	106.67	94.18	46.84
Merged-chr13-23769209-3	chr13	23768710	23769710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5542.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	9.15	10.14	21.27	11.47	12.13	9.65	14.79	12.38	10.62
Merged-chr7-4149379-3	chr7	4148870	4149870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175529, exon 1 of 1)	exon (NM_175529, exon 1 of 1)	502.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	569.77	750.16	544.8	482.42	729.62	474.24	487.96	684.03	377.84
Merged-chr12-69228073-3	chr12	69227593	69228593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011133)	promoter-TSS (NM_011133)	97.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	36.04	58.98	44.4	40.48	49.45	69.93	70.76	61.46	61.83
Merged-chr6-125215519-3	chr6	125215018	125216018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009496)	promoter-TSS (NM_009496)	-63.0	NM_001080557	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	97.82	90.31	74.0	96.48	77.91	94.04	69.71	87.11	36.22
Merged-chr1-106796738-3	chr1	106796289	106797289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-64.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	320.92	363.56	257.14	316.44	371.81	259.62	290.45	352.41	201.1
Merged-chr6-88053904-3	chr6	88053408	88054408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8638.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	23.45	10.6	5.55	13.49	6.53	8.84	11.62	9.29	1.25
Merged-chr6-57581008-3	chr6	57580505	57581505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025992)	promoter-TSS (NM_025992)	13.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	229.39	271.86	162.79	199.04	209.93	151.92	183.78	288.74	123.66
Merged-chr12-100084439-3	chr12	100083941	100084941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27890.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	149.31	88.01	43.47	232.1	108.23	117.35	224.97	198.09	86.18
Merged-chr19-32182022-3	chr19	32181526	32182526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	28987.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	120.7	87.09	33.3	204.44	164.68	90.83	58.09	46.43	32.48
Merged-chr7-119899552-3	chr7	119899046	119900046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126475)	promoter-TSS (NR_126475)	-565.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	28.6	25.8	22.2	34.41	18.66	10.45	22.18	19.46	18.74
Merged-chr1-171281766-3	chr1	171281263	171282263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-577.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	136.72	170.03	76.77	107.28	114.29	90.02	95.06	113.64	75.57
Merged-chr17-55721502-3	chr17	55721026	55722026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8890.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	96.68	146.53	52.72	91.09	84.9	93.24	79.21	96.83	88.06
Merged-chr11-79963522-3	chr11	79963026	79964026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1139.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	81.23	64.05	77.7	109.3	83.04	57.87	87.66	87.11	38.72
Merged-chr14-23825136-3	chr14	23824638	23825638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253364, intron 1 of 27)	intron (NM_001253364, intron 1 of 27)	179067.0	NM_001253375	16531.0	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	13.16	9.22	34.22	22.94	5.13	27.33	15.84	10.17	23.11
Merged-chr4-59465641-3	chr4	59465136	59466136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27003.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	61.78	52.07	78.62	71.52	62.51	67.52	60.2	49.96	35.6
Merged-chrX-71816716-3	chrX	71816244	71817244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290780)	promoter-TSS (NM_001290780)	-14.0	NM_001081356	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	205.94	225.32	114.69	235.48	259.38	127.8	236.59	232.14	114.29
Merged-chr10-117684894-3	chr10	117684390	117685390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027468, exon 9 of 9)	3' UTR (NM_027468, exon 9 of 9)	25868.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	22.88	23.04	18.5	14.84	23.33	28.13	28.52	21.67	17.49
Merged-chr11-8689725-3	chr11	8689223	8690223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25188.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	177.91	193.07	138.74	170.7	203.4	155.13	213.35	313.05	134.9
Merged-chr7-123368866-3	chr7	123368371	123369371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1044.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	149.31	192.15	103.59	149.11	158.61	122.98	134.14	211.8	101.8
Merged-chr13-62015890-2	chr13	62015389	62016389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114001.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	12.59	10.14	14.8	0.0	0.0	0.0	9.51	11.5	8.12
Merged-chr13-91681259-3	chr13	91680760	91681760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-60261.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	44.05	41.01	29.6	35.76	24.72	15.27	28.52	29.63	16.86
Merged-chr4-32571663-3	chr4	32571151	32572151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	11.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	223.67	226.71	135.97	269.21	243.05	200.95	269.33	269.28	118.66
Merged-chr10-70224812-3	chr10	70224327	70225327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20163.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	32.04	32.25	25.9	39.13	30.79	38.58	44.36	30.51	40.59
Merged-chr14-55722221-3	chr14	55721703	55722703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	-1.0	NM_001360388	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	103.54	88.01	72.15	107.95	65.78	86.01	89.78	82.69	74.32
Merged-chr7-80025207-3	chr7	80024709	80025709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145999, intron 1 of 4)	CpG	395.0	NM_001146000	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	149.31	129.48	141.52	121.45	101.7	165.58	140.47	151.66	91.81
Merged-chr1-156468777-3	chr1	156468273	156469273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	5555.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	159.6	150.22	72.15	257.07	207.6	134.23	248.2	236.56	116.16
Merged-chrX-38461081-3	chrX	38460562	38461562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4602.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	87.52	72.8	50.87	70.17	66.71	76.36	94.0	72.52	54.33
Merged-chr17-34124818-3	chr17	34124309	34125309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360530)	promoter-TSS (NM_001360530)	-709.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	48.62	41.01	32.37	43.18	30.32	50.64	68.65	67.21	56.21
Merged-chr19-41771926-1	chr19	41771426	41772426	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163495, intron 10 of 10)	intron (NM_001163495, intron 10 of 10)	24965.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	13.16	4.61	1.85	4.05	7.93	6.43	71.82	91.09	36.85
Merged-chr11-101008793-3	chr11	101008286	101009286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243051)	promoter-TSS (NM_001243051)	-666.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	434.19	411.48	241.41	356.93	386.74	211.4	293.62	477.1	150.51
Merged-chr11-90227683-3	chr11	90227177	90228177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21799.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	92.1	72.34	37.0	113.35	84.44	84.4	81.33	78.26	66.2
Merged-chr8-13104914-3	chr8	13104417	13105417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146207)	promoter-TSS (NM_146207)	426.0	NM_178708	234069.0	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	403.3	445.58	317.26	320.49	415.66	294.99	362.27	420.94	218.58
Merged-chr8-70645401-3	chr8	70644907	70645907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12951.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	537.16	468.16	269.16	182.17	104.5	47.42	289.39	400.6	106.17
Merged-chr7-47015877-3	chr7	47015385	47016385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-7471.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	68.65	47.92	61.05	103.23	61.11	85.2	90.83	87.99	46.22
Merged-chr4-47251292-3	chr4	47250741	47251741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 5 of 39)	intron (NM_009928, intron 5 of 39)	43229.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.01	6.91	5.55	17.54	8.4	14.47	9.51	9.29	6.25
Merged-chr15-82888618-3	chr15	82888114	82889114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114140, intron 1 of 5)	intron (NM_001114140, intron 1 of 5)	9847.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	127.57	136.39	56.42	80.97	86.77	65.91	79.21	103.02	59.33
Merged-chr11-101082443-5	chr11	101081951	101082951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305982)	promoter-TSS (NM_001305982)	-114.0	NM_001305982	71743.0	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	243.12	198.14	197.94	242.9	227.19	211.4	215.46	244.08	157.38
Merged-chr16-18289377-3	chr16	18288880	18289880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033324)	promoter-TSS (NM_033324)	-212.0	NM_033324	94223.0	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DGCR8, microprocessor complex subunit	protein-coding	37.76	37.32	34.22	45.21	17.26	23.31	79.21	24.76	44.97
Merged-chrX-37067480-3	chrX	37066971	37067971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15562.0	NR_002900	104369.0	Mm.453531	NR_002900	ENSMUSG00000065642	Snora69	MBI-134|Rnu69	small nucleolar RNA, H/ACA box 69	snoRNA	4.0	7.83	5.55	1.35	4.67	4.82	6.34	4.86	3.12
Merged-chr13-34002567-6	chr13	34002095	34003095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009068)	promoter-TSS (NM_009068)	199.0	NM_001243192	20719.0	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	207.66	216.57	214.59	170.7	214.59	188.09	233.42	237.44	140.52
Merged-chr2-28401876-3	chr2	28401377	28402377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46064.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	13.16	4.15	12.95	8.77	2.8	2.41	5.28	6.19	7.49
Merged-chr5-120749896-3	chr5	120749401	120750401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145227)	promoter-TSS (NM_145227)	-53.0	NM_001347448	246728.0	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	130.43	96.76	105.44	103.91	93.3	126.19	100.34	123.81	98.05
Merged-chr7-122067152-3	chr7	122066673	122067673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138589)	promoter-TSS (NM_138589)	-25.0	NM_138589	28018.0	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	218.52	210.12	245.11	209.16	268.71	228.28	223.91	230.37	111.79
Merged-chr14-67888197-3	chr14	67887683	67888683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	MIR3|SINE|MIR	-28438.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	37.76	50.23	42.55	37.78	28.46	41.8	77.1	61.02	69.32
Merged-chr11-72490054-3	chr11	72489555	72490555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153060)	promoter-TSS (NM_153060)	-135.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	7.44	5.53	1.85	6.07	2.8	9.65	4.22	2.65	5.0
Merged-chr10-115250559-3	chr10	115250061	115251061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	932.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	155.03	130.4	28.67	211.86	183.34	102.88	136.25	130.88	58.08
Merged-chr8-126591686-3	chr8	126591175	126592175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164598, exon 2 of 2)	exon (NM_001164598, exon 2 of 2)	1761.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	275.73	252.97	178.52	302.27	262.18	218.63	220.74	309.07	166.12
Merged-chr7-67425849-3	chr7	67425361	67426361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53003.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	62.35	55.29	45.32	87.71	55.51	88.42	54.92	39.8	42.47
Merged-chr15-38245042-3	chr15	38244531	38245531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	25828.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	9.72	15.67	21.27	11.47	13.53	11.25	24.29	6.19	6.25
Merged-chr3-89772782-3	chr3	89772305	89773305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	595.0	NR_130957	74034.0	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	347.24	270.94	178.52	309.02	335.89	196.12	272.5	322.34	132.4
Merged-chr7-66140347-3	chr7	66139861	66140861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	L1MC3|LINE|L1	30846.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	62.35	76.49	44.4	49.25	43.85	69.93	51.75	50.41	62.45
Merged-chr11-79962435-3	chr11	79961921	79962921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144826)	promoter-TSS (NM_144826)	-34.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	120.13	95.38	71.22	126.17	105.9	123.78	129.91	136.19	72.45
Merged-chr7-65644783-3	chr7	65644280	65645280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172310)	promoter-TSS (NM_172310)	-118.0	NM_172310	272396.0	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	42.33	24.42	35.15	55.33	25.19	18.49	63.37	32.72	17.49
Merged-chr10-10481342-3	chr10	10480845	10481845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9031.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	38.9	69.12	44.4	28.34	50.38	53.05	60.2	68.98	33.72
Merged-chr4-41740989-3	chr4	41740482	41741482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286605, intron 1 of 3)	CpG-9828	377.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	38.9	44.24	49.95	37.78	54.58	73.14	66.54	58.37	42.47
Merged-chr6-29529209-3	chr6	29528690	29529690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252382)	promoter-TSS (NM_001252382)	-92.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	159.03	89.39	118.39	128.87	74.17	105.3	137.3	123.36	83.06
Merged-chr9-92270028-3	chr9	92269536	92270536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 8 of 8)	intron (NM_011636, intron 8 of 8)	-2675.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	21.74	21.2	10.17	19.57	7.93	11.25	6.34	2.65	3.75
Merged-chr9-44604543-3	chr9	44604021	44605021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181324)	promoter-TSS (NM_181324)	-371.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	364.4	450.65	331.13	326.56	437.12	279.72	371.78	355.94	261.05
Merged-chr4-149340940-3	chr4	149340443	149341443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	6304.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	8.01	10.14	11.1	7.42	9.33	15.27	13.73	9.29	7.49
Merged-chrX-103980734-3	chrX	103980235	103981235	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358205, intron 1 of 4)	CpG	550.0	NM_001358205	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	276.87	363.56	344.08	288.78	327.96	233.9	246.09	325.44	226.7
Merged-chr8-70833258-4	chr8	70832752	70833752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6468.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	194.5	154.36	123.02	327.24	288.3	245.16	232.36	200.74	128.65
Merged-chr13-60619832-3	chr13	60619334	60620334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	17623.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	116.13	99.99	77.7	150.46	88.17	120.57	73.93	59.69	54.96
Merged-chr16-4683994-3	chr16	4683496	4684496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023646)	promoter-TSS (NM_023646)	-74.0	NM_023646	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	276.3	313.33	197.02	259.77	253.78	243.55	331.64	381.15	172.37
Merged-chrX-100494214-3	chrX	100493714	100494714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008784)	promoter-TSS (NM_008784)	-77.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	64.64	98.61	50.87	78.27	70.91	53.85	74.99	92.41	59.33
Merged-chr10-92722400-3	chr10	92721914	92722914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008682)	promoter-TSS (NM_008682)	4.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	119.56	88.93	56.42	85.69	115.69	119.76	122.52	109.22	61.2
Merged-chr5-36726572-3	chr5	36726071	36727071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22108.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	163.61	162.66	129.49	190.95	144.15	131.82	208.07	191.9	98.68
Merged-chr6-72439569-3	chr6	72439034	72440034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	24.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	339.23	236.38	195.17	379.19	268.24	213.0	297.84	291.39	181.74
Merged-chr15-93405722-3	chr15	93405157	93406157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358749, intron 2 of 8)	intron (NM_001358749, intron 2 of 8)	7193.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	41.19	42.39	35.15	42.51	27.52	28.94	55.98	49.96	30.6
Merged-chr10-37236115-3	chr10	37235613	37236613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97187.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	117.27	113.35	75.85	91.76	85.84	101.28	73.93	95.07	70.57
Merged-chr6-54117287-4	chr6	54116762	54117762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	77330.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	147.59	124.41	101.74	122.12	128.29	112.53	78.16	80.92	88.06
Merged-chr7-141266073-2	chr7	141265543	141266543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252600, exon 2 of 9)	5' UTR (NM_001252600, exon 2 of 9)	381.0	NM_001252601	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	230.54	282.0	149.84	225.36	181.94	141.47	227.08	308.63	202.35
Merged-chr2-33431515-3	chr2	33431008	33432008	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276332)	promoter-TSS (NM_001276332)	-184.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	91.53	101.37	121.17	86.36	95.63	122.98	125.69	90.64	93.05
Merged-chr5-105582465-4	chr5	105581970	105582970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	62999.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	161.32	127.18	95.27	192.97	149.28	150.31	156.32	170.68	83.69
Merged-chr7-89270661-3	chr7	89270164	89271164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68123.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	30.89	27.19	10.17	41.83	22.86	45.01	39.08	33.6	26.23
Merged-chr17-50993836-3	chr17	50993339	50994339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	165539.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	199.07	217.49	133.19	170.03	189.4	164.78	200.68	213.12	115.54
Merged-chr17-23547357-3	chr17	23546852	23547852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3447.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	113.27	127.18	101.74	87.71	68.58	84.4	55.98	51.29	41.84
Merged-chr5-29947491-3	chr5	29946993	29947993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65621.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	86.95	96.76	49.95	100.53	63.91	75.56	95.06	98.6	56.21
Merged-chr15-96699025-3	chr15	96698535	96699535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355633, intron 1 of 14)	CpG	693.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	414.74	319.78	247.89	425.75	383.47	275.7	392.9	277.24	187.98
Merged-chr13-114834802-3	chr13	114834311	114835311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008396, exon 30 of 30)	3' UTR (NM_008396, exon 30 of 30)	16574.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	9.15	12.44	10.17	6.07	3.27	4.02	7.39	5.75	6.25
Merged-chr17-94750029-3	chr17	94749590	94750590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024720)	promoter-TSS (NR_024720)	-10.0	NR_024720	77022.0	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	145.3	169.11	106.37	130.9	132.95	121.37	176.38	155.64	76.19
Merged-chr13-100835071-2	chr13	100834562	100835562	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1635.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	1.14	6.91	3.7	38.46	31.26	57.87	33.8	47.31	21.23
Merged-chr7-28436504-3	chr7	28436024	28437024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022024)	promoter-TSS (NM_022024)	-333.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	239.69	151.6	136.89	174.75	130.16	98.06	185.89	137.96	101.17
Merged-chr17-29070799-3	chr17	29070309	29071309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036469, intron 1 of 1)	intron (NR_036469, intron 1 of 1)	8317.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	30.32	31.79	28.67	20.92	16.33	18.49	28.52	18.13	3.75
Merged-chr16-33531368-3	chr16	33530880	33531880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	12785.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	108.69	76.03	64.75	179.47	148.35	83.59	57.03	60.58	16.86
Merged-chrUn_JH584304-33210-1	chrUn_JH584304	32710	33710	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26479.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	29.57	24.32	0.0
Merged-chr13-60892977-3	chr13	60892485	60893485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	4462.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	116.13	157.13	129.49	132.92	145.08	153.52	162.65	216.66	95.55
Merged-chr1-59237291-3	chr1	59236802	59237802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-71.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	192.21	196.29	82.32	185.55	199.2	126.19	164.76	164.04	78.07
Merged-chr11-55113676-3	chr11	55113178	55114178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010299)	TTS (NM_010299)	15693.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	101.25	91.24	76.77	118.08	68.11	69.13	92.94	75.61	62.45
Merged-chr10-42678862-3	chr10	42678334	42679334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172416)	promoter-TSS (NM_172416)	-82.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	138.44	117.96	92.5	139.67	154.88	102.08	126.74	105.24	63.08
Merged-chr5-149229154-3	chr5	149228654	149229654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-35850.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	49.2	52.99	48.1	45.21	47.12	66.71	69.71	50.41	41.84
Merged-chr10-95514991-3	chr10	95514496	95515496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080560)	promoter-TSS (NM_080560)	-166.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	401.01	349.74	280.26	391.34	297.17	245.96	297.84	274.14	201.1
Merged-chr7-137478471-3	chr7	137477969	137478969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40795.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	2.86	2.3	0.0	2.02	2.33	5.63	3.17	1.77	2.5
Merged-chr11-59163543-3	chr11	59163133	59164133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001270791, exon 1 of 2)	exon (NM_001270791, exon 1 of 2)	112.0	NM_001270791	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	333.51	270.94	181.29	286.75	251.91	241.94	283.06	229.04	147.39
Merged-chr17-13685840-3	chr17	13685339	13686339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74702.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	6.86	9.22	7.4	20.92	8.86	11.25	6.34	14.15	6.25
Merged-chr16-84583601-3	chr16	84583117	84584117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96172.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	156.74	124.87	70.3	29.69	31.72	9.65	99.28	95.95	59.33
Merged-chr8-46851793-3	chr8	46851294	46852294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112049.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	144.73	148.37	77.7	158.56	122.23	114.94	147.87	172.45	103.05
Merged-chr2-121413805-3	chr2	121413322	121414322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	-30.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	363.25	337.75	290.44	333.99	322.82	239.53	303.13	293.16	195.48
Merged-chr2-26315547-3	chr2	26315028	26316028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199146)	promoter-TSS (NM_001199146)	-5.0	NM_001199146	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	13.73	13.36	14.8	19.57	6.53	24.11	11.62	7.52	8.12
Merged-chr2-164917046-3	chr2	164916548	164917548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-5298.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	16.02	10.6	9.25	9.45	5.6	19.29	13.73	14.15	2.5
Merged-chr3-118081997-3	chr3	118081512	118082512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-213076.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	8.01	5.99	12.02	10.12	16.33	4.82	17.96	9.73	8.74
Merged-chr9-53384436-4	chr9	53383832	53384832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	CpG	309.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	205.94	224.4	192.39	238.18	213.66	226.67	233.42	235.23	134.27
Merged-chr2-4554946-3	chr2	4554447	4555447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	(TTTTTG)n|Simple_repeat|Simple_repeat	-4807.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	57.78	58.52	51.8	55.33	52.25	61.09	66.54	74.28	38.72
Merged-chr16-49049428-3	chr16	49048924	49049924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8062.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	19.45	17.05	20.35	20.24	21.46	17.68	17.96	15.03	16.24
Merged-chr1-86417154-3	chr1	86416652	86417652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9177.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	176.19	169.57	61.97	163.96	132.49	148.7	158.43	170.23	96.18
Merged-chr16-4077790-3	chr16	4077271	4078271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026508)	promoter-TSS (NM_026508)	39.0	NR_152409	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	110.98	153.9	97.12	130.9	144.15	123.78	166.88	163.16	67.45
Merged-chr1-156066275-1	chr1	156065775	156066775	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001358627, exon 6 of 6)	3' UTR (NM_001358627, exon 6 of 6)	25414.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	9.15	5.07	9.25	2.7	2.8	7.23	48.58	47.31	19.36
Merged-chr1-89454705-3	chr1	89454218	89455218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-93.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	79.52	38.71	64.75	96.48	75.57	65.91	94.0	52.18	19.36
Merged-chr2-154658063-3	chr2	154657556	154658556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	1030.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	417.6	421.16	242.34	435.19	367.61	273.29	340.09	445.7	239.82
Merged-chr14-20695169-5	chr14	20694679	20695679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168273)	TTS (NM_001168273)	211.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	321.49	288.45	287.66	336.01	317.23	290.17	230.25	295.81	215.46
Merged-chr10-91124072-3	chr10	91123559	91124559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133668)	promoter-TSS (NM_133668)	-96.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	371.83	365.4	260.84	312.39	321.89	259.62	282.0	290.95	213.59
Merged-chr9-61372337-3	chr9	61371895	61372895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	29.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	88.67	101.83	67.52	62.75	70.44	69.93	70.76	84.01	62.45
Merged-chr1-36270804-3	chr1	36270294	36271294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	2631.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	112.69	93.08	44.4	96.48	72.31	84.4	110.9	128.23	69.95
Merged-chr2-59435020-3	chr2	59434524	59435524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48342.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	25.74	23.5	35.15	45.88	38.25	23.31	31.69	24.76	21.86
Merged-chr3-88625040-2	chr3	88624540	88625540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	3646.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	67.5	67.74	95.27	91.76	61.11	113.33	53.87	51.29	50.59
Merged-chr6-136813328-2	chr6	136812822	136813822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_021714)	TTS (NM_021714)	5074.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	9.72	17.51	17.57	20.24	13.06	16.88	13.73	7.96	4.37
Merged-chr5-93093286-3	chr5	93092764	93093764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-152.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	49.77	39.17	27.75	61.4	48.98	62.7	62.31	38.03	13.12
Merged-chr6-121225128-3	chr6	121224613	121225613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	14379.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	39.47	57.6	46.25	33.06	28.46	27.33	71.82	50.41	50.59
Merged-chr3-107783491-3	chr3	107782993	107783993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23024.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	40.04	27.19	10.17	35.09	9.8	6.43	17.96	11.5	6.25
Merged-chr4-119965188-1	chr4	119964688	119965688	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	150510.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	33.75	31.33	31.45	115.38	91.44	131.02	16.9	28.3	20.61
Merged-chr10-61146991-3	chr10	61146499	61147499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316674, intron 1 of 14)	(CAGCT)n|Simple_repeat|Simple_repeat	685.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	491.97	312.41	422.7	433.84	298.1	362.51	460.5	340.91	279.16
Merged-chr13-105293451-3	chr13	105292949	105293949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027934)	promoter-TSS (NM_027934)	-435.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	110.98	158.05	66.6	90.41	91.44	96.45	127.8	124.25	79.94
Merged-chr18-54918083-3	chr18	54917595	54918595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	72085.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	51.48	36.86	24.05	53.3	34.99	52.25	66.54	54.83	28.73
Merged-chr18-73623281-3	chr18	73622786	73623786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	50581.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	4.58	0.92	0.0	6.07	0.47	1.61	1.06	0.88	2.5
Merged-chr7-4137149-5	chr7	4136642	4137642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033548)	promoter-TSS (NR_033548)	86.0	NM_172736	232798.0	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	352.39	331.3	188.69	304.3	287.37	179.24	268.27	273.26	125.53
Merged-chr2-60881013-7	chr2	60880549	60881549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	CpG	389.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	295.18	253.43	252.51	280.68	249.58	241.14	298.9	228.6	164.88
Merged-chr7-128065779-3	chr7	128065275	128066275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 2 of 29)	Lx8b|LINE|L1	3135.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	60.64	74.19	53.65	58.7	38.25	57.07	31.69	39.35	44.97
Merged-chr17-25579122-3	chr17	25578639	25579639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029624)	promoter-TSS (NM_029624)	-35.0	NM_029624	76483.0	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	64.64	49.76	51.8	98.51	67.64	71.54	73.93	57.04	21.86
Merged-chr11-3181627-2	chr11	3181122	3182122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	11841.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	37.76	65.43	81.4	41.83	63.45	70.73	9.51	4.86	96.8
Merged-chr16-84735336-3	chr16	84734846	84735846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-44.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	42.9	33.18	45.32	22.27	17.73	32.96	49.64	37.14	29.98
Merged-chr17-17063989-3	chr17	17063473	17064473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005358)	promoter-TSS (NM_001005358)	-130.0	NM_001005358	449000.0	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	16.59	29.49	8.32	18.22	18.19	15.27	24.29	14.15	10.62
Merged-chr15-95795362-3	chr15	95794850	95795850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	4507.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	171.62	180.17	83.25	143.71	99.83	88.42	111.96	118.94	87.43
Merged-chr11-121204387-3	chr11	121203921	121204921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001333)	promoter-TSS (NM_001001333)	-12.0	NM_001001333	238023.0	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	70.93	58.06	39.77	60.72	58.78	65.11	49.64	49.96	26.23
Merged-chr14-55015280-3	chr14	55014784	55015784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-170.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	189.92	236.84	200.71	180.15	187.54	146.29	213.35	220.2	129.28
Merged-chr15-27681612-3	chr15	27681110	27682110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242423)	promoter-TSS (NM_001242423)	-68.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	167.61	160.81	156.32	220.63	188.94	166.38	191.17	180.85	76.19
Merged-chr6-108660523-3	chr6	108660024	108661024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011498)	promoter-TSS (NM_011498)	-105.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	415.88	266.33	252.51	433.17	338.22	285.34	317.91	297.58	121.16
Merged-chr2-148857164-3	chr2	148856678	148857678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_029960	77705.0	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	42.33	50.69	27.75	44.53	37.32	60.28	47.53	45.54	28.73
Merged-chr3-103279707-3	chr3	103279226	103280226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053170, exon 1 of 20)	5' UTR (NM_053170, exon 1 of 20)	433.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	158.46	124.41	192.39	180.82	107.3	165.58	194.34	109.66	124.91
Merged-chr15-38518332-3	chr15	38517829	38518829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301688, intron 1 of 11)	CpG	937.0	NM_001301688	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	279.73	213.8	202.56	298.23	161.41	148.7	243.98	191.9	144.27
Merged-chr17-81480537-3	chr17	81480050	81481050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	257837.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	34.9	34.1	48.1	50.6	34.99	34.56	42.25	40.68	20.61
Merged-chr9-90114714-3	chr9	90114217	90115217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357780, exon 1 of 13)	5' UTR (NM_001357780, exon 1 of 13)	103.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	376.98	367.24	360.73	309.7	317.23	297.4	336.92	306.86	206.09
Merged-chr1-33757825-3	chr1	33757319	33758319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145392)	promoter-TSS (NM_145392)	-69.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	37.18	19.35	23.12	35.09	24.26	7.23	42.25	14.15	6.25
Merged-chr19-8712130-3	chr19	8711625	8712625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 3 of 9)	intron (NM_001161413, intron 3 of 9)	1772.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	167.61	115.66	68.45	120.1	111.03	63.5	111.96	160.95	61.83
Merged-chr2-167754080-3	chr2	167753574	167754574	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62897.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	294.61	160.81	157.24	305.65	162.81	213.0	208.07	181.29	100.55
Merged-chr3-9759298-3	chr3	9758815	9759815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	74364.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	14.87	12.44	9.25	30.36	12.13	12.86	15.84	20.78	13.74
Merged-chr19-21104582-2	chr19	21104078	21105078	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126458)	promoter-TSS (NR_126458)	-132.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	7.44	2.76	7.4	13.49	16.33	11.25	5.28	13.71	14.99
Merged-chr8-25090567-3	chr8	25090070	25091070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	11241.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	232.25	188.46	126.72	180.82	123.16	127.8	145.75	142.82	133.02
Merged-chr18-57656232-3	chr18	57655736	57656736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	L1MB2|LINE|L1	-17651.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	37.76	38.71	37.0	39.13	29.39	53.85	51.75	44.66	27.48
Merged-chr11-107402386-3	chr11	107401893	107402893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	68327.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	22.88	13.36	5.55	21.59	17.73	19.29	21.12	14.59	23.73
Merged-chr6-48444232-3	chr6	48443738	48444738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355746, intron 1 of 4)	intron (NM_001355746, intron 1 of 4)	852.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	22.31	6.91	15.72	21.59	8.4	16.08	46.47	17.24	22.48
Merged-chr7-110614350-3	chr7	110613865	110614865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 1 of 40)	CpG	555.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	319.21	211.5	229.39	292.15	162.34	227.47	288.34	182.17	143.02
Merged-chr3-133310532-2	chr3	133310030	133311030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293641, intron 1 of 11)	CpG	420.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	122.42	89.85	81.4	138.99	75.57	100.47	163.71	86.66	68.07
Merged-chr7-101383933-3	chr7	101383427	101384427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1599.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	271.15	252.51	184.07	332.64	220.66	190.5	195.39	306.86	175.49
Merged-chr11-76889699-3	chr11	76889211	76890211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-14834.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	45.19	44.7	27.75	46.56	42.92	39.39	29.57	25.2	31.23
Merged-chr2-160318459-3	chr2	160317960	160318960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033411, intron 1 of 2)	intron (NM_001033411, intron 1 of 2)	9034.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	22.31	17.97	23.12	18.22	14.0	24.92	29.57	18.13	9.99
Merged-chr19-29241717-3	chr19	29241220	29242220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10083.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	7.44	7.83	3.7	7.42	9.8	3.22	7.39	8.4	10.62
Merged-chr8-86878742-3	chr8	86878233	86879233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	6525.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	46.91	47.46	27.75	46.56	16.79	28.13	36.97	25.2	9.99
Merged-chr1-64305717-3	chr1	64305206	64306206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184317.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	200.79	198.6	146.14	178.13	185.2	165.58	161.6	196.32	154.26
Merged-chr17-64754584-3	chr17	64754071	64755071	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-12540.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	127.57	134.09	80.47	170.7	110.56	98.06	124.63	146.36	90.56
Merged-chr11-11686222-3	chr11	11685707	11686707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301868, exon 1 of 8)	5' UTR (NM_001301868, exon 1 of 8)	282.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	227.11	239.15	185.92	191.62	196.4	130.21	207.01	137.96	141.77
Merged-chr12-41197462-3	chr12	41196969	41197969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	173379.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	62.35	102.29	53.65	72.19	67.64	54.66	86.61	110.98	51.84
Merged-chrX-109142473-3	chrX	109141957	109142957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	47050.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	46.91	49.3	42.55	49.93	47.58	38.58	34.85	40.68	34.97
Merged-chr2-109281154-1	chr2	109280654	109281654	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139303, intron 1 of 16)	intron (NM_139303, intron 1 of 16)	416.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	211.09	240.99	117.47	159.23	196.4	139.86	136.25	207.38	118.66
Merged-chr1-36307698-3	chr1	36307184	36308184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-49.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	155.03	154.82	98.97	174.08	139.49	128.61	135.19	102.58	74.94
Merged-chr12-104225104-3	chr12	104224593	104225593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	10460.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	58.92	62.67	64.75	41.83	47.58	32.15	83.44	65.88	45.59
Merged-chr10-78373021-5	chr10	78372478	78373478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21278.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	101.25	83.4	73.07	89.74	71.84	98.87	81.33	80.03	53.71
Merged-chr11-20332813-3	chr11	20332332	20333332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018861)	promoter-TSS (NM_018861)	-119.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	33.75	39.63	43.47	56.0	35.45	65.11	48.58	53.5	33.1
Merged-chr8-105966094-3	chr8	105965583	105966583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253804)	promoter-TSS (NM_001253804)	32.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	68.65	50.69	47.17	75.57	43.85	50.64	34.85	26.97	30.6
Merged-chr3-95645447-3	chr3	95644926	95645926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13295.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	67.5	50.69	49.95	74.22	49.92	101.28	88.72	64.11	56.21
Merged-chr6-137825506-3	chr6	137824965	137825965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	70888.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	52.63	41.01	43.47	58.7	52.25	44.21	53.87	42.89	28.73
Merged-chr1-37491881-3	chr1	37491382	37492382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3277.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	340.94	279.24	139.67	274.61	191.27	155.93	238.7	229.93	135.52
Merged-chr4-126890077-3	chr4	126889568	126890568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357201, exon 20 of 28)	exon (NM_001357201, exon 20 of 28)	77855.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	16.02	23.5	14.8	20.92	23.79	36.97	12.67	18.13	19.36
Merged-chr18-9450179-3	chr18	9449684	9450684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-30.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	160.75	106.9	159.09	154.51	132.95	124.59	185.89	104.79	79.94
Merged-chr16-37871399-3	chr16	37870906	37871906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	3006.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	32.04	38.71	20.35	45.88	30.79	29.74	29.57	30.51	34.97
Merged-chr4-45408790-3	chr4	45408282	45409282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009949)	promoter-TSS (NM_001009949)	-16.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	268.87	294.44	218.29	337.36	298.1	258.02	402.41	446.15	217.96
Merged-chr8-115414300-3	chr8	115413796	115414796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	292598.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.86	1.84	13.87	8.77	2.33	1.61	5.28	5.75	3.75
Merged-chrX-20364495-3	chrX	20363989	20364989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110967)	promoter-TSS (NR_110967)	8.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	106.4	122.57	90.65	68.82	79.77	47.42	72.88	100.81	59.33
Merged-chr5-111176713-2	chr5	111176200	111177200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	-153997.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	38.9	26.26	38.85	42.51	40.59	27.33	5.28	4.86	4.37
Merged-chr10-53505721-3	chr10	53505215	53506215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	13274.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	17.16	20.74	37.92	12.14	9.33	29.74	26.4	20.34	33.1
Merged-chr9-66593143-3	chr9	66592669	66593669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302116)	promoter-TSS (NM_001302116)	-54.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	191.07	188.46	156.32	197.02	160.48	202.55	184.83	187.92	121.78
Merged-chr10-127676901-3	chr10	127676377	127677377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113211)	promoter-TSS (NM_001113211)	-188.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	118.42	111.05	74.0	73.54	76.04	66.71	118.29	130.44	59.95
Merged-chr3-95521405-3	chr3	95520884	95521884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5402.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	159.03	102.29	108.22	101.21	55.51	101.28	107.73	81.8	86.18
Merged-chr10-10551053-1	chr10	10550553	10551553	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	7154.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	17.16	23.96	29.6	31.71	24.72	18.49	32.74	30.95	18.11
Merged-chr6-134189963-3	chr6	134189451	134190451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	154251.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	16.02	13.36	36.07	33.06	13.53	20.9	6.34	6.63	15.61
Merged-chr12-12176796-3	chr12	12176297	12177297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85342.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	29.17	23.96	24.05	21.59	23.33	30.54	41.19	29.63	21.23
Merged-chr5-105151011-3	chr5	105150509	105151509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11423.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	95.53	110.13	107.29	69.5	45.72	78.77	125.69	94.62	43.09
Merged-chr11-76406855-3	chr11	76406378	76407378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291161)	promoter-TSS (NM_001291161)	-47.0	NM_001291161	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	115.55	120.26	70.3	64.77	99.37	43.4	62.31	46.87	36.22
Merged-chr8-25091307-3	chr8	25090807	25091807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	10504.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	207.08	192.61	123.94	149.79	127.82	130.21	139.42	183.06	124.91
Merged-chr9-40631338-3	chr9	40630833	40631833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-54631.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	24.03	25.34	10.17	16.19	14.93	15.27	24.29	16.36	17.49
Merged-chr18-67449293-3	chr18	67448736	67449736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-100.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	44.05	40.09	42.55	58.7	44.78	28.94	63.37	42.01	30.6
Merged-chr7-24442470-3	chr7	24441962	24442962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3220.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	14.87	14.28	1.85	36.43	33.12	50.64	25.35	16.8	12.49
Merged-chr5-88595671-3	chr5	88595118	88596118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 2 of 13)	intron (NM_001359208, intron 2 of 13)	12105.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	135.58	138.24	86.95	135.62	113.36	109.32	149.98	145.03	79.94
Merged-chr10-41477354-3	chr10	41476832	41477832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358838)	promoter-TSS (NM_001358838)	-678.0	NM_001358838	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	203.65	152.98	102.67	206.46	162.81	129.41	158.43	172.89	84.94
Merged-chr3-89214406-3	chr3	89213902	89214902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-67.0	NM_001357367	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	413.02	293.06	92.5	352.2	254.71	134.23	184.83	156.53	91.18
Merged-chr4-128707593-3	chr4	128707091	128708091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 2 of 14)	intron (NM_018774, intron 2 of 14)	18853.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	40.04	23.96	14.8	41.16	18.66	54.66	21.12	29.18	22.48
Merged-chr5-113777059-3	chr5	113776581	113777581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025526, intron 4 of 4)	intron (NM_025526, intron 4 of 4)	4269.0	NM_025526	66383.0	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	139.01	152.98	92.5	141.69	108.23	122.98	106.67	113.19	62.45
Merged-chrX-7714620-3	chrX	7714103	7715103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_172372	54636.0	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	107.55	62.67	36.07	84.34	59.25	37.78	84.49	74.73	29.98
Merged-chr7-97083022-3	chr7	97082510	97083510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	1259.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	192.78	168.65	144.29	192.29	190.34	144.68	178.5	206.93	144.27
Merged-chr3-9033979-3	chr3	9033464	9034464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28000.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	70.36	68.2	49.02	135.62	113.36	107.71	190.11	280.33	119.91
Merged-chr5-65435971-3	chr5	65435469	65436469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-127.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	77.23	75.57	103.59	103.23	102.17	146.29	98.23	108.77	64.95
Merged-chr1-156558724-3	chr1	156558226	156559226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009595)	promoter-TSS (NM_009595)	-61.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	187.06	173.72	158.17	192.97	205.26	180.85	185.89	222.85	130.53
Merged-chr1-118388931-3	chr1	118388424	118389424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-134.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	167.04	248.82	153.54	131.57	170.28	187.28	164.76	251.15	149.89
Merged-chr6-125001340-3	chr6	125000841	125001841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145926, intron 4 of 5)	intron (NM_001145926, intron 4 of 5)	2731.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	77.8	52.53	74.0	59.38	30.32	53.85	58.09	69.42	46.22
Merged-chr17-28233223-2	chr17	28232721	28233721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 1 of 7)	intron (NM_011145, intron 1 of 7)	467.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	409.02	369.09	324.66	360.3	414.73	261.23	386.56	432.44	189.23
Merged-chr14-74946843-3	chr14	74946315	74947315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	1062.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	73.22	76.49	59.2	68.15	69.04	77.16	115.12	100.37	93.68
Merged-chr15-28024549-3	chr15	28024062	28025062	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	CpG	1286.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	49.77	24.42	15.72	35.76	24.72	13.66	16.9	18.57	4.37
Merged-chr8-117476025-3	chr8	117475527	117476527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16762.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	29.17	16.13	19.42	29.01	15.86	20.9	24.29	22.55	9.99
Merged-chr7-27166682-5	chr7	27166149	27167149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357767)	promoter-TSS (NM_001357767)	153.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	325.5	303.2	341.31	308.35	240.25	229.88	305.24	244.96	170.5
Merged-chr8-111056299-3	chr8	111055786	111056786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028274)	promoter-TSS (NM_028274)	-53.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	40.62	22.12	26.82	37.11	37.32	50.64	36.97	16.8	11.87
Merged-chr2-31052640-3	chr2	31052131	31053131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019406)	TTS (NM_019406)	43869.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	66.93	68.66	61.97	117.4	64.38	80.38	72.88	55.27	48.71
Merged-chr5-65867939-3	chr5	65867433	65868433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	MER63D|DNA|hAT-Blackjack	4364.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	231.68	226.71	86.95	219.28	175.87	91.63	101.39	172.0	73.07
Merged-chr11-76027825-3	chr11	76027298	76028298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029658)	promoter-TSS (NM_029658)	-16.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	12.59	4.61	6.47	10.12	5.13	2.41	6.34	1.77	0.0
Merged-chr7-121072609-3	chr7	121072110	121073110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	1920.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	69.79	99.53	80.47	65.45	81.17	94.04	74.99	70.3	64.95
Merged-chr10-18999591-1	chr10	18999091	19000091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12372.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.0	7.37	3.7	4.72	4.67	8.04	2.11	3.54	6.25
Merged-chr15-95824422-3	chr15	95823937	95824937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155276)	TTS (NR_155276)	5635.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	315.2	276.47	124.87	312.39	181.47	204.97	258.77	297.14	114.91
Merged-chr3-40745293-3	chr3	40744802	40745802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011020)	promoter-TSS (NM_011020)	-311.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	54.92	50.23	43.47	80.29	69.51	61.89	82.38	69.42	36.22
Merged-chrX-107816325-3	chrX	107815810	107816810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025921)	promoter-TSS (NM_025921)	24.0	NM_025921	67028.0	Mm.37274	NM_025921	ENSMUSG00000031242	2610002M06Rik	8430408J07Rik|AI876413|Chmp1b2	RIKEN cDNA 2610002M06 gene	protein-coding	73.22	58.98	50.87	80.29	61.11	53.85	71.82	74.28	21.86
Merged-chr2-131091073-3	chr2	131090593	131091593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	124.14	94.0	98.05	110.65	68.58	89.22	63.37	97.72	83.06
Merged-chr12-25209026-3	chr12	25208524	25209524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79850.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	50.91	47.92	40.7	82.32	81.64	41.8	29.57	24.32	18.74
Merged-chr16-33745642-3	chr16	33745148	33746148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-48389.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	70.36	58.98	73.07	86.36	54.11	71.54	81.33	115.85	69.95
Merged-chr2-148409328-3	chr2	148408820	148409820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	12.01	9.22	15.72	14.84	11.2	16.08	17.96	6.19	8.74
Merged-chr6-72414280-3	chr6	72413791	72414791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019802)	promoter-TSS (NM_019802)	-17.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	60.64	70.04	59.2	94.46	69.04	77.97	85.55	65.88	50.59
Merged-chr17-17910304-3	chr17	17909777	17910777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	22453.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	120.13	134.09	122.09	88.39	110.1	103.69	241.87	240.54	168.62
Merged-chr18-34378179-3	chr18	34377684	34378684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4769.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	52.63	54.37	63.82	37.78	32.66	40.99	35.91	30.51	39.97
Merged-chr17-3084092-3	chr17	3083605	3084605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	78.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	109.26	146.99	132.27	111.33	135.29	147.09	140.47	145.47	116.16
Merged-chr13-33085820-3	chr13	33085329	33086329	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173052, intron 2 of 6)	RMER17C|LTR|ERVK	1726.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	23.45	24.42	20.35	13.49	11.2	14.47	17.96	11.5	31.23
Merged-chr1-79581560-2	chr1	79581065	79582065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90407.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.0	3.69	5.55	2.02	3.73	4.02	2.11	1.77	1.25
Merged-chr19-3699655-3	chr19	3699144	3700144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8649.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	22.88	20.27	20.35	18.89	11.2	20.09	15.84	11.94	16.86
Merged-chr3-32708533-3	chr3	32708036	32709036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019673)	promoter-TSS (NM_019673)	-10.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	50.91	44.24	39.77	42.51	39.65	46.62	55.98	50.41	36.85
Merged-chr12-32378984-3	chr12	32378535	32379535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162903, exon 1 of 1)	exon (NM_001162903, exon 1 of 1)	246.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	222.53	186.62	204.41	180.82	141.82	167.99	236.59	142.38	148.64
Merged-chr17-27897164-1	chr17	27896664	27897664	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	12078.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	5.15	0.0	0.0	1.35	2.33	1.61	155.26	187.48	85.56
Merged-chr10-44383166-3	chr10	44382663	44383663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23487.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	79.52	68.66	55.5	93.79	64.84	49.83	68.65	77.82	38.1
Merged-chr2-170159181-3	chr2	170158670	170159670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16495.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	45.19	33.64	41.62	40.48	23.33	37.78	72.88	69.86	45.59
Merged-chr13-80949677-1	chr13	80949177	80950177	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9274.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	79.52	87.55	74.0	120.77	93.77	100.47	106.67	131.32	77.44
Merged-chr5-134567702-3	chr5	134567207	134568207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4369.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	37.18	29.95	49.95	15.52	20.99	14.47	22.18	26.97	13.12
Merged-chr1-189707247-3	chr1	189706720	189707720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19134.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	17.16	7.37	12.95	10.12	9.8	20.9	5.28	7.96	19.36
Merged-chr16-8831087-3	chr16	8830581	8831581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081400, intron 1 of 3)	CpG	981.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	324.93	378.3	333.91	265.84	349.41	313.48	248.2	263.09	281.66
Merged-chr4-127021162-3	chr4	127020634	127021634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045010)	promoter-TSS (NR_045010)	-167.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	239.69	224.86	179.44	205.79	200.6	130.21	210.18	187.92	103.67
Merged-chr14-70075482-3	chr14	70074973	70075973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1972.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	127.0	88.01	67.52	70.85	37.79	40.99	104.56	99.93	71.82
Merged-chr6-52714323-3	chr6	52713821	52714821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355596, exon 1 of 18)	5' UTR (NM_001355596, exon 1 of 18)	156.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	415.88	434.52	308.93	308.35	374.61	294.99	332.7	357.27	290.41
Merged-chr10-125389471-3	chr10	125388951	125389951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-60488.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	326.07	287.53	302.46	331.96	251.91	294.99	364.38	393.53	236.7
Merged-chr14-51164541-3	chr14	51164032	51165032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2272.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	48.62	45.16	52.72	28.34	10.73	33.76	47.53	43.33	62.45
Merged-chr16-14361550-3	chr16	14361038	14362038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-20.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	262.0	231.31	193.32	184.2	181.47	198.54	240.81	239.65	122.41
Merged-chr16-33885827-3	chr16	33885337	33886337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	56172.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	81.23	69.12	67.52	72.19	92.84	77.16	110.9	86.66	53.08
Merged-chr16-58408387-3	chr16	58407890	58408890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028523)	promoter-TSS (NM_028523)	-145.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	10.3	5.07	5.55	15.52	16.79	25.72	14.79	7.96	3.75
Merged-chr19-4012795-3	chr19	4012312	4013312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133666)	promoter-TSS (NM_133666)	-57.0	NM_133666	17995.0	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	100.68	75.11	51.8	76.92	68.11	53.05	94.0	74.28	27.48
Merged-chr7-97738137-3	chr7	97737634	97738634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175105, exon 1 of 3)	5' UTR (NM_175105, exon 1 of 3)	113.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	15.45	10.6	7.4	16.87	8.4	14.47	14.79	16.8	3.75
Merged-chr7-83802718-3	chr7	83802225	83803225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7886.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	37.76	29.03	29.6	41.16	22.39	27.33	29.57	33.16	23.11
Merged-chr6-71908974-5	chr6	71908467	71909467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009088)	promoter-TSS (NM_009088)	-86.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	113.27	122.57	90.65	104.58	101.7	92.44	173.21	128.67	77.44
Merged-chr14-75179806-3	chr14	75179308	75180308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	43383.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	256.28	264.03	160.02	201.07	223.46	176.03	237.64	302.88	151.14
Merged-chr12-73779436-3	chr12	73778925	73779925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121899.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	33.18	39.63	13.87	78.94	93.77	60.28	96.11	81.8	33.72
Merged-chr7-46639817-3	chr7	46639315	46640315	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013789)	promoter-TSS (NM_013789)	-8.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	23.45	21.66	20.35	26.99	30.32	31.35	32.74	14.59	6.25
Merged-chr3-9666089-2	chr3	9665577	9666577	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55992.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	8.01	3.23	3.7	11.47	10.26	6.43	23.24	21.67	3.75
Merged-chr2-19055649-3	chr2	19055153	19056153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57334.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	13.73	14.75	22.2	8.1	4.2	11.25	6.34	7.52	6.87
Merged-chr16-96358080-1	chr16	96357580	96358580	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3677.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	1.72	1.84	2.77	0.67	1.87	1.61	6.34	3.54	4.37
Merged-chr3-90509108-3	chr3	90508622	90509622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293777, intron 1 of 5)	C-rich|Low_complexity|Low_complexity	376.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	390.14	346.05	245.11	340.73	321.89	275.7	352.77	308.19	135.52
Merged-chr11-19920468-3	chr11	19919949	19920949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3993.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	117.27	95.38	102.67	108.63	93.77	69.93	117.24	100.81	63.08
Merged-chr19-17253024-1	chr19	17252524	17253524	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86481.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	16.59	15.21	20.35	4.72	7.0	10.45	70.76	72.07	37.47
Merged-chr9-63780722-3	chr9	63780209	63781209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22715.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	43.48	46.08	28.67	53.3	51.32	56.27	54.92	35.82	27.48
Merged-chr13-55211530-3	chr13	55211036	55212036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	1754.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	338.08	297.21	226.61	329.26	292.5	274.9	282.0	241.87	192.35
Merged-chr11-20112971-3	chr11	20112465	20113465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146243)	promoter-TSS (NM_146243)	-14.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	322.64	320.25	268.24	275.28	248.65	260.43	301.01	287.85	212.96
Merged-chr9-107597689-3	chr9	107597193	107598193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_111986)	TTS (NR_111986)	7709.0	NM_009153	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	34.9	23.04	23.12	24.96	19.13	27.33	23.24	29.18	22.48
Merged-chr5-113993890-3	chr5	113993418	113994418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198109)	promoter-TSS (NM_198109)	-161.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	106.4	82.48	84.17	87.04	82.11	94.04	102.45	68.54	65.58
Merged-chr8-117067179-3	chr8	117066679	117067679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 6 of 42)	intron (NM_029686, intron 6 of 42)	15270.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	19.45	6.45	4.62	14.17	3.27	4.82	22.18	11.94	6.87
Merged-chr9-65550389-2	chr9	65549898	65550898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29689.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	186.49	116.12	131.34	174.08	103.56	124.59	57.03	43.77	64.33
Merged-chr12-81719896-3	chr12	81719382	81720382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001174107, exon 11 of 11)	3' UTR (NM_001174107, exon 11 of 11)	61288.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	38.33	36.86	16.65	26.31	28.46	38.58	17.96	19.9	15.61
Merged-chr16-55810420-1	chr16	55809920	55810920	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159394)	TTS (NM_001159394)	11718.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.15	7.37	7.4	3.37	4.67	5.63	8.45	6.19	9.37
Merged-chr2-119338060-3	chr2	119337600	119338600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11903.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	27.46	25.8	19.42	31.71	21.93	19.29	15.84	13.27	18.74
Merged-chr11-34010401-3	chr11	34009899	34010899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-17206.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	145.3	133.63	175.74	133.59	107.76	187.28	139.42	114.08	120.53
Merged-chr10-69275518-1	chr10	69275018	69276018	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252638, intron 8 of 11)	intron (NM_001252638, intron 8 of 11)	62324.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	11.44	7.37	6.47	7.42	6.06	8.04	14.79	6.63	9.37
Merged-chr17-63895376-3	chr17	63894889	63895889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286415, intron 1 of 17)	intron (NM_001286415, intron 1 of 17)	17323.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	33.75	36.86	14.8	54.65	29.86	32.15	67.6	40.24	45.59
Merged-chr11-74649354-3	chr11	74648861	74649861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	-134.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	284.31	229.47	195.17	290.8	193.6	191.3	218.63	218.43	124.28
Merged-chr12-59013428-3	chr12	59012934	59013934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025656)	promoter-TSS (NM_025656)	43.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	85.81	118.42	51.8	101.88	90.04	89.22	101.39	119.39	76.19
Merged-chr14-73445682-3	chr14	73445194	73446194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60405.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	220.81	228.09	125.79	204.44	162.81	170.4	175.33	185.71	111.17
Merged-chr5-65867497-3	chr5	65866983	65867983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	3914.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	310.05	306.42	132.27	304.3	221.13	105.3	140.47	241.87	98.05
Merged-chr13-30674124-3	chr13	30673621	30674621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	14062.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	74.37	71.88	25.9	60.05	71.84	62.7	53.87	57.92	22.48
Merged-chr7-27592008-1	chr7	27591508	27592508	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110208, intron 1 of 13)	CpG	456.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	118.42	124.41	81.4	103.91	93.77	128.61	195.39	175.1	111.79
Merged-chr9-75436124-3	chr9	75435630	75436630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5394.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	132.72	158.97	97.12	135.62	123.16	131.82	162.65	200.74	86.18
Merged-chr5-101827120-3	chr5	101826614	101827614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61984.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	12.01	12.9	9.25	20.92	10.26	10.45	21.12	12.38	13.12
Merged-chr15-76368892-3	chr15	76368375	76369375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021555)	promoter-TSS (NM_021555)	-23.0	NM_021555	59053.0	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	32.04	17.05	22.2	43.18	34.06	34.56	39.08	16.36	17.49
Merged-chr14-122107048-3	chr14	122106575	122107575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015586)	promoter-TSS (NR_015586)	-7.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	406.16	445.58	277.49	346.13	390.0	275.7	314.74	333.39	214.21
Merged-chr9-5311922-3	chr9	5311427	5312427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	3078.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	17.73	23.96	12.02	17.54	19.59	19.29	16.9	15.03	7.49
Merged-chrX-94865742-3	chrX	94865241	94866241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67452.0	NR_003292	668171.0	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	2.29	0.92	3.7	2.02	0.47	1.61	1.06	1.77	2.5
Merged-chr9-40324438-3	chr9	40323941	40324941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3118.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	356.96	304.58	187.77	310.37	239.32	204.16	236.59	250.27	85.56
Merged-chr13-63877301-3	chr13	63876792	63877792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013608, intron 16 of 18)	intron (NM_001013608, intron 16 of 18)	62052.0	NM_023507	76251.0	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	5.72	7.37	8.32	7.42	9.33	3.22	12.67	11.94	22.48
Merged-chr17-29032608-3	chr17	29032104	29033104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-56.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	470.23	397.2	274.71	510.09	397.47	260.43	391.84	401.49	249.19
Merged-chr10-17418342-3	chr10	17417854	17418854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-304874.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	93.82	111.51	60.12	82.32	61.58	76.36	78.16	95.07	79.32
Merged-chr7-38107983-1	chr7	38107483	38108483	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-493.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	201.36	165.88	165.57	192.29	187.07	164.78	237.64	185.71	91.81
Merged-chr12-4544589-3	chr12	4544085	4545085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	20472.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	5.72	18.43	24.05	13.49	12.6	28.13	14.79	11.5	11.24
Merged-chr18-80704969-3	chr18	80704475	80705475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	3198.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	111.55	98.61	66.6	99.86	68.11	82.79	68.65	60.13	52.46
Merged-chr9-50659594-3	chr9	50659091	50660091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145614, exon 1 of 14)	5' UTR (NM_145614, exon 1 of 14)	189.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	64.07	61.28	65.67	68.15	50.38	82.79	110.9	90.2	61.83
Merged-chr8-105326362-3	chr8	105325861	105326861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	-3.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	59.49	39.17	43.47	43.18	46.65	76.36	95.06	72.96	48.09
Merged-chr11-114569024-2	chr11	114568517	114569517	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99526.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	7.44	3.23	1.85	62.07	46.65	43.4	106.67	99.05	66.2
Merged-chr12-40558833-3	chr12	40558326	40559326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	112773.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	217.38	199.98	98.05	204.44	145.08	136.64	219.69	219.31	131.15
Merged-chr4-72165896-3	chr4	72165397	72166397	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	34996.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	33.18	32.25	35.15	32.39	28.46	42.6	48.58	55.71	43.09
Merged-chr19-10305000-3	chr19	10304496	10305496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-119.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	156.74	96.3	66.6	159.23	125.96	77.97	91.89	60.13	29.98
Merged-chr6-128803212-3	chr6	128802716	128803716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14575.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	30.32	23.04	24.05	47.9	19.59	17.68	32.74	34.93	29.35
Merged-chr2-153015413-3	chr2	153014895	153015895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178939)	promoter-TSS (NM_178939)	-12.0	NM_178939	68559.0	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	25.74	30.41	14.8	48.58	29.39	34.56	39.08	24.32	18.74
Merged-chr6-118139187-3	chr6	118138678	118139678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030165)	promoter-TSS (NM_030165)	-38.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	117.84	70.96	33.3	126.17	50.38	89.22	76.05	33.16	52.46
Merged-chr2-164443217-3	chr2	164442705	164443705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011521)	promoter-TSS (NM_011521)	-17.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	45.19	23.5	33.3	35.09	19.59	29.74	32.74	23.43	26.23
Merged-chr15-79546125-3	chr15	79545632	79546632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040187, intron 1 of 12)	CpG	427.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	406.16	447.88	328.36	354.9	366.68	298.21	297.84	367.88	221.71
Merged-chr6-120187792-3	chr6	120187285	120188285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-6038.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	34.32	30.87	27.75	37.78	27.06	63.5	32.74	30.51	22.48
Merged-chr1-180261159-3	chr1	180260680	180261680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4880.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	114.41	76.49	49.95	135.62	89.1	81.18	92.94	110.98	87.43
Merged-chr9-63031578-3	chr9	63031078	63032078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50699.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	21.74	20.74	16.65	20.92	23.33	31.35	20.07	26.97	29.98
Merged-chr4-83273900-3	chr4	83273389	83274389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	50300.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	168.76	193.07	135.04	159.91	128.76	167.19	109.84	95.51	73.69
Merged-chr14-30654370-3	chr14	30653869	30654869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177815)	promoter-TSS (NM_177815)	-6.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	153.31	197.68	130.42	156.53	216.46	145.49	171.1	191.9	100.55
Merged-chr7-29983799-3	chr7	29983316	29984316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-139.0	NM_001167873	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	145.3	146.53	160.02	138.99	130.16	142.27	111.96	60.58	81.19
Merged-chr11-8604947-3	chr11	8604430	8605430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	59605.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	122.99	107.36	92.5	148.44	110.1	81.99	74.99	98.6	46.84
Merged-chr12-103343644-3	chr12	103343146	103344146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	12355.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	158.46	125.33	114.69	144.39	91.44	69.93	148.92	138.84	81.19
Merged-chr9-95954790-3	chr9	95954273	95955273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	13.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	235.11	287.07	163.72	226.71	275.24	205.77	231.3	233.46	150.51
Merged-chr15-79063045-3	chr15	79062548	79063548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-189.0	NM_144849	223690.0	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	32.04	44.24	29.6	43.86	20.06	26.53	40.14	25.65	21.23
Merged-chr7-43664197-3	chr7	43663689	43664689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4028.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	108.12	120.73	85.1	89.74	52.25	90.02	86.61	91.53	94.3
Merged-chr17-80062317-3	chr17	80061799	80062799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-31.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	112.12	123.49	92.5	172.73	188.0	155.93	126.74	124.25	93.68
Merged-chr17-84061837-3	chr17	84061332	84062332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-16828.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	48.62	37.78	59.2	68.15	41.99	66.71	53.87	63.67	38.72
Merged-chr19-42779817-3	chr19	42779338	42780338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001346703, exon 1 of 20)	5' UTR (NM_001346703, exon 1 of 20)	140.0	NM_001346703	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	274.01	289.37	182.22	269.89	285.5	255.6	273.55	250.27	129.9
Merged-chr11-3169660-2	chr11	3169148	3170148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23815.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	51.48	67.27	91.57	49.93	65.78	73.14	8.45	1.33	111.17
Merged-chr1-171411301-3	chr1	171410782	171411782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-31.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	167.61	190.76	129.49	170.7	160.01	132.63	174.27	160.06	113.66
Merged-chrX-109189792-3	chrX	109189283	109190283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6973.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	23.45	35.94	7.4	40.48	32.66	35.37	17.96	29.18	18.11
Merged-chrX-159988152-3	chrX	159987653	159988653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163085)	promoter-TSS (NM_001163085)	-280.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	36.61	15.21	11.1	26.31	10.73	11.25	20.07	8.4	6.87
Merged-chr2-131089829-3	chr2	131089331	131090331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3066.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	128.71	125.79	112.84	109.98	76.97	114.14	92.94	121.6	60.58
Merged-chr1-91063329-3	chr1	91062833	91063833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9889.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	80.66	66.35	47.17	31.71	28.92	26.53	42.25	33.16	24.98
Merged-chr6-124712184-3	chr6	124711697	124712697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013536)	promoter-TSS (NM_013536)	-19.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	176.19	133.17	152.62	153.84	174.47	164.78	144.7	182.17	102.42
Merged-chr13-93772165-3	chr13	93771674	93772674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	495.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	109.26	98.61	60.12	167.33	117.56	146.29	83.44	72.07	31.85
Merged-chr13-119429493-3	chr13	119428965	119429965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145457, intron 1 of 10)	CpG	563.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	104.69	81.56	98.05	96.48	57.85	110.92	144.7	76.94	80.56
Merged-chr11-55461310-3	chr11	55460802	55461802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009720)	promoter-TSS (NM_009720)	-94.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	129.86	134.55	121.17	126.17	92.37	133.43	133.08	167.58	82.44
Merged-chr14-50997278-3	chr14	50996746	50997746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10505.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	11.44	9.68	17.57	12.14	15.39	19.29	13.73	15.92	14.99
Merged-chr19-6118517-3	chr19	6118009	6119009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133678)	promoter-TSS (NM_133678)	77.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	133.29	133.17	116.54	128.2	132.95	145.49	122.52	103.47	69.95
Merged-chr2-166696807-3	chr2	166696294	166697294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	MTD|LTR|ERVL-MaLR	17038.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	181.91	125.33	132.27	178.8	75.11	78.77	182.72	209.59	70.57
Merged-chr15-86169880-3	chr15	86169400	86170400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15828.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	401.01	377.38	303.38	411.58	446.92	334.38	382.34	491.25	199.85
Merged-chr11-69666232-3	chr11	69665734	69666734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291058)	promoter-TSS (NM_001291058)	-64.0	NR_110993	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	197.36	148.83	125.79	170.7	136.22	152.72	193.28	188.81	108.67
Merged-chr10-70214516-3	chr10	70213937	70214937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	9773.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	103.54	125.33	92.5	99.86	96.57	94.85	142.59	183.5	52.46
Merged-chr6-142757257-3	chr6	142756748	142757748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	562.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	224.25	193.99	112.84	244.92	210.4	119.76	172.16	158.74	91.81
Merged-chr4-138969322-3	chr4	138968779	138969779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025786)	TTS (NM_025786)	2167.0	NM_025786	66825.0	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	119.56	81.1	48.1	137.64	77.91	114.14	70.76	49.96	32.48
Merged-chr2-122378005-3	chr2	122377510	122378510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-His-CAY_|tRNA|tRNA	-9092.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	212.8	246.52	135.04	165.98	198.73	128.61	151.03	192.34	93.05
Merged-chr8-57801410-3	chr8	57800909	57801909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-148354.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	41.19	44.24	31.45	31.71	22.86	24.92	51.75	55.71	43.72
Merged-chr4-129742899-3	chr4	129742413	129743413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045036)	promoter-TSS (NR_045036)	-610.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	147.59	121.19	140.59	132.24	90.5	167.19	159.48	187.92	121.78
Merged-chr11-4240441-1	chr11	4239941	4240941	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001013365, exon 3 of 3)	3' UTR (NM_001013365, exon 3 of 3)	3656.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	3.43	0.46	5.55	14.84	7.93	5.63	4.22	1.33	1.25
Merged-chr14-30620404-3	chr14	30619894	30620894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	5814.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	121.28	99.53	87.87	132.24	97.5	95.65	99.28	108.33	68.07
Merged-chr8-46934393-3	chr8	46933897	46934897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52490.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	396.43	351.12	198.87	394.71	276.64	242.74	380.23	417.85	190.48
Merged-chr5-138171988-3	chr5	138171491	138172491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-30.0	NM_021392	11781.0	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	53.2	66.81	60.12	49.93	43.85	70.73	68.65	49.52	59.33
Merged-chr8-70523144-3	chr8	70522618	70523618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029366)	promoter-TSS (NM_029366)	62.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	220.81	218.87	180.37	231.43	211.79	154.33	230.25	243.63	116.79
Merged-chr4-46360054-3	chr4	46359561	46360561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	15867.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	12.01	12.9	4.62	6.07	6.53	8.84	7.39	12.82	11.24
Merged-chr1-161251576-2	chr1	161251070	161252070	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-360.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	30.32	30.41	7.4	22.27	18.66	15.27	46.47	26.97	17.49
Merged-chr16-4214217-3	chr16	4213718	4214718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-814.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	189.35	117.5	142.44	149.11	101.7	139.06	139.42	100.81	90.56
Merged-chr10-66852107-3	chr10	66851620	66852620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	68264.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	257.42	250.67	170.19	324.54	274.31	170.4	299.96	367.44	141.14
Merged-chrX-107298972-1	chrX	107298472	107299472	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14626.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	2.29	1.84	1.85	5.4	2.33	0.0	2.11	0.88	0.0
Merged-chr2-148527201-3	chr2	148526699	148527699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83664.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	30.89	34.56	12.02	47.23	43.39	55.46	59.15	51.73	29.35
Merged-chr14-54426910-3	chr14	54426428	54427428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	19.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	86.95	90.31	51.8	89.06	87.24	86.81	97.17	90.2	44.97
Merged-chr12-73667765-3	chr12	73667277	73668277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	82981.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	38.9	29.03	32.37	39.13	42.45	48.23	50.7	54.83	48.09
Merged-chr2-11502119-3	chr2	11501649	11502649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177752)	promoter-TSS (NM_001177752)	-59.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	163.61	130.4	99.89	197.02	223.92	141.47	151.03	178.64	75.57
Merged-chr8-86872312-3	chr8	86871820	86872820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	12938.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	72.08	84.32	65.67	45.21	49.92	41.8	60.2	60.58	63.08
Merged-chr7-19316529-3	chr7	19316026	19317026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	228.25	119.8	62.9	172.05	123.16	69.93	127.8	186.15	59.33
Merged-chrX-151344123-3	chrX	151343611	151344611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198105)	promoter-TSS (NM_198105)	-112.0	NM_198105	207375.0	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	19.45	13.36	34.22	26.31	9.33	36.17	27.46	18.13	14.36
Merged-chr16-87689040-3	chr16	87688534	87689534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9920.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	88.67	68.66	58.27	76.92	69.98	107.71	65.48	78.26	49.96
Merged-chr10-80798009-3	chr10	80797503	80798503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	623.0	NM_023900	78670.0	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	385.56	316.56	269.16	340.06	306.03	288.56	292.56	346.66	166.75
Merged-chr15-79883469-3	chr15	79882956	79883956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8952.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	15.45	13.36	11.1	30.36	23.33	32.15	15.84	7.07	13.12
Merged-chr16-94601799-3	chr16	94601287	94602287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-9632.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	159.03	144.23	135.04	127.52	118.03	109.32	120.41	130.44	109.29
Merged-chr8-123040255-3	chr8	123039747	123040747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	2037.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	47.48	57.14	39.77	43.18	35.92	32.15	26.4	42.45	21.23
Merged-chr12-32795899-3	chr12	32795371	32796371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24464.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	90.96	99.99	70.3	109.98	81.64	73.14	105.62	100.37	86.18
Merged-chr18-67610914-3	chr18	67610409	67611409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	30446.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	24.6	17.51	20.35	37.11	16.79	24.11	32.74	11.05	21.23
Merged-chr16-58556298-3	chr16	58555797	58556797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32044.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	38.33	33.18	26.82	55.33	38.72	36.97	12.67	5.31	9.99
Merged-chr8-94533009-3	chr8	94532521	94533521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153507)	promoter-TSS (NM_153507)	-7.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	26.89	8.75	14.8	26.99	18.19	16.08	23.24	10.61	11.87
Merged-chrX-169978909-1	chrX	169978409	169979409	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029457)	promoter-TSS (NR_029457)	8.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	5.72	5.99	5.55	0.0	9.33	0.0	159.48	219.31	98.05
Merged-chr13-93499670-3	chr13	93499156	93500156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021310, exon 1 of 11)	5' UTR (NM_021310, exon 1 of 11)	152.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	303.76	192.61	175.74	300.25	247.72	191.3	275.66	214.89	111.79
Merged-chr13-112987709-3	chr13	112987219	112988219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081062)	promoter-TSS (NM_001081062)	-83.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	2.29	5.53	5.55	10.12	1.4	1.61	7.39	2.65	2.5
Merged-chr5-125339239-3	chr5	125338751	125339751	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1843.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	52.06	49.76	55.5	66.8	51.78	53.05	72.88	62.79	40.59
Merged-chr3-40531581-3	chr3	40531085	40532085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8673.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	28.6	28.11	14.8	43.18	25.19	26.53	53.87	48.2	21.23
Merged-chrX-20819355-3	chrX	20818855	20819855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29188.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	7.44	8.29	3.7	4.05	3.73	6.43	4.22	7.07	5.0
Merged-chr11-117119593-3	chr11	117119065	117120065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	4393.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	115.55	103.22	94.35	141.69	98.43	111.73	132.02	150.34	80.56
Merged-chr1-172590602-3	chr1	172590103	172591103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029084)	promoter-TSS (NM_029084)	-35.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	46.34	43.31	28.67	39.81	34.06	40.99	66.54	72.07	46.22
Merged-chr2-122780610-3	chr2	122780109	122781109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-1390.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	54.92	52.99	44.4	37.78	40.12	53.05	50.7	46.87	42.47
Merged-chr1-191073226-3	chr1	191072732	191073732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 4 of 5)	intron (NM_198654, intron 4 of 5)	10211.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	341.52	304.58	178.52	349.5	201.53	204.16	341.15	414.31	164.88
Merged-chr17-83918619-1	chr17	83918119	83919119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-64201.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	5.15	4.15	0.0	2.7	4.67	4.02	2.11	3.1	1.25
Merged-chr11-101732908-3	chr11	101732419	101733419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144831)	promoter-TSS (NM_144831)	-37.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	107.55	65.43	65.67	106.61	57.38	62.7	135.19	111.87	49.34
Merged-chr16-22027381-3	chr16	22026900	22027900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027488, intron 7 of 16)	intron (NR_027488, intron 7 of 16)	17916.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	70.93	58.52	46.25	71.52	59.25	72.34	61.26	63.23	53.71
Merged-chr7-64357650-3	chr7	64357160	64358160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	MLTR14|LTR|ERV1	16435.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	109.26	130.4	143.37	161.93	152.08	184.07	212.29	263.53	121.16
Merged-chr11-61174631-2	chr11	61174137	61175137	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004143, intron 1 of 12)	CpG	422.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	222.53	191.69	131.34	210.51	197.33	115.75	181.66	170.23	116.79
Merged-chr4-53116046-3	chr4	53115539	53116539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43856.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	199.07	90.77	76.77	209.84	61.58	111.73	198.56	193.67	93.05
Merged-chr7-127449200-3	chr7	127448717	127449717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175163)	promoter-TSS (NM_175163)	-59.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	80.09	59.44	71.22	50.6	53.18	71.54	55.98	38.47	38.72
Merged-chr8-94341002-3	chr8	94340504	94341504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 11 of 24)	intron (NM_019415, intron 11 of 24)	11796.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	14.87	10.14	8.32	20.92	5.6	16.88	10.56	3.54	8.74
Merged-chr1-191741227-3	chr1	191740733	191741733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	22838.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	37.18	42.85	43.47	18.22	9.33	10.45	19.01	23.88	21.86
Merged-chr2-117352477-3	chr2	117351977	117352977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9600.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	241.98	236.38	101.74	205.11	186.6	113.33	191.17	272.82	91.18
Merged-chr8-64850012-3	chr8	64849512	64850512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178633)	promoter-TSS (NM_178633)	-88.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	27.46	15.21	37.0	36.43	27.99	13.66	38.02	17.69	20.61
Merged-chr10-34210184-3	chr10	34209680	34210680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	65.79	72.34	77.7	80.29	62.98	73.14	78.16	71.63	60.58
Merged-chr2-5951435-3	chr2	5950920	5951920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-49.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	156.17	141.92	61.05	133.59	114.76	106.1	162.65	134.42	79.32
Merged-chr16-36631803-3	chr16	36631312	36632312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	L1MB3|LINE|L1	34265.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	232.83	175.56	103.59	269.89	197.33	154.33	174.27	230.81	118.04
Merged-chr7-28528143-3	chr7	28527652	28528652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5316.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	14.87	10.6	3.7	20.24	14.46	13.66	16.9	9.29	13.12
Merged-chr17-27856440-3	chr17	27855930	27856930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080769)	promoter-TSS (NM_001080769)	-77.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	113.84	80.64	85.1	141.69	122.23	99.67	145.75	164.93	83.69
Merged-chr13-63431292-3	chr13	63430800	63431800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347515, intron 1 of 15)	(CCCCG)n|Simple_repeat|Simple_repeat	445.0	NM_001347515	14088.0	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	96.11	115.2	87.87	101.88	108.7	119.76	108.79	147.68	92.43
Merged-chr13-48968338-3	chr13	48967820	48968820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033268)	promoter-TSS (NM_001033268)	208.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	241.41	173.25	177.59	271.24	175.87	192.11	241.87	167.58	142.39
Merged-chr6-121245844-3	chr6	121245349	121246349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011909)	promoter-TSS (NM_011909)	-57.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	76.08	78.79	58.27	66.12	68.11	63.5	97.17	102.14	37.47
Merged-chr2-155385265-3	chr2	155384787	155385787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	3431.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	14.87	14.28	7.4	12.14	5.6	7.23	13.73	13.27	10.62
Merged-chr13-56615459-3	chr13	56614958	56615958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	5872.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	48.05	56.22	31.45	59.38	43.39	58.68	53.87	47.75	46.84
Merged-chr9-32591899-3	chr9	32591391	32592391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50439.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.15	2.3	3.7	4.72	3.73	1.61	5.28	6.63	2.5
Merged-chr3-100409464-3	chr3	100408972	100409972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16933.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	26.89	24.88	10.17	20.92	13.53	14.47	26.4	16.8	13.74
Merged-chr3-27192465-3	chr3	27192032	27193032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	ID_B1|SINE|B4	9528.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	407.87	447.88	256.21	402.13	462.78	307.05	302.07	444.38	209.22
Merged-chr1-180766856-3	chr1	180766369	180767369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40826.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	21.17	18.43	23.12	24.29	21.46	57.87	59.15	44.66	59.33
Merged-chr19-26607368-3	chr19	26606884	26607884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	2224.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	91.53	58.52	63.82	76.92	52.25	65.91	66.54	48.2	45.59
Merged-chr10-81430673-7	chr10	81430190	81431190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3517.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	342.66	200.9	180.37	376.49	214.59	155.93	280.95	175.98	118.66
Merged-chr16-18348194-3	chr16	18347727	18348727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272029)	promoter-TSS (NM_001272029)	45.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	4.0	3.69	9.25	9.45	4.67	5.63	6.34	3.1	0.0
Merged-chr1-91034751-3	chr1	91034273	91035273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-18671.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	191.07	183.39	113.77	146.41	111.03	127.8	146.81	149.89	85.56
Merged-chr18-84952097-3	chr18	84951596	84952596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025969)	promoter-TSS (NM_025969)	-572.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	113.84	167.26	114.69	102.56	119.89	156.74	130.97	180.4	90.56
Merged-chr4-129783028-3	chr4	129782542	129783542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-37437.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	159.6	146.99	140.59	162.61	121.76	168.8	109.84	115.85	89.31
Merged-chr6-29609889-3	chr6	29609407	29610407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347079)	promoter-TSS (NM_001347079)	-58.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	99.54	149.75	142.44	129.55	174.47	192.11	134.14	147.24	105.55
Merged-chr6-119377782-3	chr6	119377274	119378274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	10960.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	29.75	23.96	22.2	14.17	16.79	42.6	28.52	21.67	33.1
Merged-chr10-75677040-3	chr10	75676548	75677548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-33040.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	120.7	125.33	70.3	132.24	93.3	122.18	86.61	99.49	77.44
Merged-chr5-142817873-3	chr5	142817380	142818380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122730)	promoter-TSS (NM_001122730)	-493.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	67.5	76.95	76.77	54.65	48.52	77.97	58.09	69.42	84.94
Merged-chr4-119195333-3	chr4	119194833	119195833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024462)	promoter-TSS (NM_024462)	23.0	NM_024462	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	29.75	35.02	11.1	54.65	37.32	47.42	74.99	44.22	32.48
Merged-chr9-56995041-3	chr9	56994543	56995543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019651)	promoter-TSS (NM_019651)	75.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	117.84	118.88	121.17	127.52	114.29	122.98	120.41	87.99	70.57
Merged-chr11-107339557-3	chr11	107339012	107340012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	131208.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	120.7	94.46	57.35	132.92	66.71	77.16	111.96	103.02	66.2
Merged-chr14-120325811-3	chr14	120325322	120326322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	19370.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	98.97	92.62	53.65	171.38	126.42	66.71	155.26	173.77	76.82
Merged-chr4-95162478-3	chr4	95161980	95162980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110258.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	70.36	94.0	90.65	76.24	66.24	61.09	77.1	112.31	69.95
Merged-chr4-116507578-3	chr4	116507086	116508086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008389)	promoter-TSS (NM_008389)	37.0	NM_008389	16351.0	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	75.51	73.26	63.82	72.87	84.44	68.32	57.03	64.11	20.61
Merged-chrM-12596-2	chrM	12106	13106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											243.12	192.15	37.92	182.85	55.98	36.97	151.03	55.27	25.61
Merged-chr17-34261687-3	chr17	34261168	34262168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1559.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	316.92	209.2	213.66	85.69	62.05	77.16	167.93	220.2	91.18
Merged-chr1-75317700-3	chr1	75317212	75318212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	-75.0	NM_001110831	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	58.35	76.03	51.8	45.21	65.31	70.73	78.16	66.77	49.96
Merged-chr17-73009008-3	chr17	73008493	73009493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90688.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	24.6	23.04	41.62	28.34	23.33	24.92	19.01	14.59	19.98
Merged-chr16-11253870-1	chr16	11253370	11254370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_035466)	TTS (NR_035466)	455.0	NM_001130008	14852.0	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	359.82	354.8	344.08	304.3	333.55	311.07	346.43	287.85	254.18
Merged-chr14-65593066-3	chr14	65592590	65593590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253812)	promoter-TSS (NM_001253812)	22.0	NM_001253812	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	23.45	37.32	33.3	27.66	36.39	25.72	43.3	44.66	19.36
Merged-chr19-53529037-3	chr19	53528534	53529534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085390)	promoter-TSS (NM_001085390)	-284.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	125.28	59.44	42.55	151.81	108.7	103.69	36.97	16.36	10.62
Merged-chr16-10962235-3	chr16	10961740	10962740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 3 of 3)	intron (NM_019980, intron 3 of 3)	30881.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	33.18	23.04	30.52	33.74	23.79	19.29	38.02	33.16	11.87
Merged-chr11-102218993-3	chr11	102218482	102219482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284248, intron 4 of 28)	intron (NM_001284248, intron 4 of 28)	11168.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	26.89	22.12	42.55	41.16	36.85	28.94	36.97	38.47	27.48
Merged-chr2-153741218-3	chr2	153740719	153741719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007896)	promoter-TSS (NM_007896)	-68.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	316.35	227.63	206.26	331.29	214.59	175.23	274.61	173.77	142.39
Merged-chr18-34220877-3	chr18	34220284	34221284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007462)	promoter-TSS (NM_007462)	-200.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	222.53	188.92	171.12	217.26	163.28	166.38	193.28	141.94	98.68
Merged-chr8-115506827-3	chr8	115506333	115507333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	200061.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	9.72	3.69	0.92	10.8	7.0	6.43	11.62	3.98	0.62
Merged-chr10-14210235-3	chr10	14209732	14210732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243853.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	13.16	10.14	3.7	7.42	4.2	8.04	9.51	7.07	3.75
Merged-chr13-41883852-3	chr13	41883353	41884353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033545, intron 1 of 6)	MIR3|SINE|MIR	17938.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	20.59	15.67	8.32	13.49	8.86	3.22	4.22	6.63	10.62
Merged-chr11-55458372-3	chr11	55457877	55458877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2831.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	46.34	50.23	27.75	53.98	34.52	38.58	50.7	28.74	26.23
Merged-chr4-149955138-3	chr4	149954626	149955626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029035)	promoter-TSS (NM_029035)	-120.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	14.3	13.82	11.1	40.48	14.0	15.27	26.4	15.92	12.49
Merged-chr17-86447307-3	chr17	86446808	86447808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-160130.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	28.6	13.36	16.65	31.71	22.86	17.68	16.9	14.15	8.12
Merged-chr11-59902466-2	chr11	59901969	59902969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19030.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	12.01	10.6	12.95	49.93	39.65	44.21	28.52	38.91	14.99
Merged-chr19-11321314-3	chr19	11320815	11321815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276398, exon 7 of 7)	3' UTR (NM_001276398, exon 7 of 7)	13380.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	16.59	14.75	7.4	12.14	9.8	13.66	12.67	12.82	6.87
Merged-chr9-44734423-3	chr9	44734001	44735001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 1 of 21)	CpG	697.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	42.33	16.59	0.0	29.69	13.06	16.88	32.74	11.05	9.99
Merged-chr13-21716336-3	chr13	21715830	21716830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	-82.0	NM_178182	319191.0	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	146.45	146.53	89.72	114.7	114.29	112.53	99.28	149.01	110.54
Merged-chr11-77686070-3	chr11	77685561	77686561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024205)	promoter-TSS (NM_001024205)	-78.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	191.64	117.96	115.62	145.74	68.11	129.41	155.26	108.77	82.44
Merged-chr10-99194823-3	chr10	99194325	99195325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 12 of 12)	intron (NR_153333, intron 12 of 12)	-68406.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	31.46	31.33	14.8	31.71	18.19	18.49	32.74	35.37	21.23
Merged-chr19-32712255-3	chr19	32711727	32712727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026487)	promoter-TSS (NM_026487)	71.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	317.49	285.23	247.89	307.67	289.7	207.38	299.96	288.74	156.13
Merged-chr6-38900324-3	chr6	38899835	38900835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-18651.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	132.72	141.92	90.65	124.82	95.17	73.14	119.35	145.03	77.44
Merged-chr7-7136757-3	chr7	7136267	7137267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029584)	promoter-TSS (NM_029584)	-12.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	20.02	22.12	22.2	14.84	17.26	25.72	27.46	13.27	13.12
Merged-chr6-31080813-3	chr6	31080311	31081311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17718.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	176.76	141.0	136.89	267.86	171.21	208.98	195.39	219.76	86.18
Merged-chr1-191242327-1	chr1	191241827	191242827	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17873.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	5.15	7.37	5.55	13.49	10.73	5.63	4.22	5.31	9.99
Merged-chr4-32274961-3	chr4	32274459	32275459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142476.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	52.06	37.78	16.65	45.21	31.72	40.99	27.46	20.34	19.36
Merged-chr16-52145016-3	chr16	52144496	52145496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	113447.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.15	7.83	12.95	14.84	9.33	8.84	19.01	11.94	6.25
Merged-chr18-39800385-3	chr18	39799867	39800867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26870.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	192.78	237.3	105.44	158.56	128.76	153.52	168.99	176.42	116.79
Merged-chr1-37427395-3	chr1	37426888	37427888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198006, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	2715.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	86.38	97.23	60.12	59.38	61.58	59.48	89.78	106.56	37.47
Merged-chr2-121449171-3	chr2	121448665	121449665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-33.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	324.35	323.93	287.66	305.65	292.97	247.57	264.05	286.08	181.11
Merged-chr2-57238345-3	chr2	57237866	57238866	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010274)	promoter-TSS (NM_010274)	-16.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	358.68	375.08	248.81	367.72	332.15	230.69	311.57	359.92	174.24
Merged-chr17-24960814-3	chr17	24960293	24961293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198937)	promoter-TSS (NM_198937)	-170.0	NM_198937	52009.0	Mm.371601	NM_198937	ENSMUSG00000024165	Jpt2	2810430B18Rik|AL022629|C16orf34|D17Ertd441e|Hn1l	Jupiter microtubule associated homolog 2	protein-coding	80.09	52.99	61.05	67.47	61.11	63.5	42.25	62.35	26.85
Merged-chr2-172420659-3	chr2	172420160	172421160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 2 of 6)	intron (NM_001080820, intron 2 of 6)	-19918.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	111.55	116.58	49.95	98.51	73.71	131.82	88.72	96.83	105.55
Merged-chr9-90244586-3	chr9	90244084	90245084	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	26185.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	59.49	58.98	44.4	82.32	51.32	65.11	91.89	76.94	48.71
Merged-chr17-29398308-3	chr17	29397774	29398774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37360.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	158.46	122.57	104.52	107.95	64.38	60.28	155.26	124.25	78.69
Merged-chr3-54814802-3	chr3	54814302	54815302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-7011.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	14.87	12.44	5.55	12.14	3.27	11.25	6.34	7.07	8.12
Merged-chr6-120820427-3	chr6	120819918	120820918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	intron (NM_007510, intron 1 of 8)	2280.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	53.77	78.33	52.72	70.85	64.38	73.14	104.56	76.49	45.59
Merged-chr10-44729188-3	chr10	44728688	44729688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270440.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	94.39	77.41	46.25	143.04	82.11	105.3	96.11	107.45	58.08
Merged-chr12-17748235-3	chr12	17747747	17748747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	57438.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	14.87	14.75	20.35	26.31	8.86	16.08	27.46	16.36	10.62
Merged-chr7-114302922-3	chr7	114302423	114303423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26807.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	17.73	21.66	16.65	16.19	20.53	15.27	5.28	3.98	10.62
Merged-chr15-77970955-3	chr15	77970409	77971409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-85.0	NM_018749	55944.0	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	240.26	240.53	178.52	259.77	232.32	186.48	261.93	284.76	158.63
Merged-chr4-83314678-3	chr4	83314192	83315192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	MIR|SINE|MIR	9497.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	160.18	185.7	155.39	188.92	179.14	168.8	202.79	248.5	144.89
Merged-chr3-104863886-3	chr3	104863386	104864386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253702)	promoter-TSS (NM_001253702)	619.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	203.08	203.67	139.67	185.55	179.61	152.72	193.28	216.66	141.14
Merged-chr11-71008481-3	chr11	71007971	71008971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291147, exon 7 of 7)	3' UTR (NM_001291147, exon 7 of 7)	-4039.0	NM_178367	216877.0	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	69.79	85.25	50.87	61.4	54.58	65.91	61.26	72.96	56.83
Merged-chr6-86526221-3	chr6	86525717	86526717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-28.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	398.72	288.91	274.71	376.49	263.58	227.47	389.73	317.92	154.26
Merged-chr10-77536927-3	chr10	77536404	77537404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	MTD|LTR|ERVL-MaLR	6556.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	257.42	187.08	133.19	226.03	144.62	176.03	208.07	219.76	127.4
Merged-chr2-150835913-1	chr2	150835413	150836413	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 10 of 12)	intron (NR_151505, intron 10 of 12)	6657.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	21.17	15.21	7.4	21.59	20.06	22.51	11.62	16.36	13.12
Merged-chr7-106760198-3	chr7	106759708	106760708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6822.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	16.59	19.35	24.05	8.1	7.0	18.49	22.18	25.65	12.49
Merged-chr8-70700661-3	chr8	70700168	70701168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010592)	TTS (NM_010592)	2929.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	157.89	120.73	120.24	159.91	90.97	81.18	119.35	101.26	92.43
Merged-chr14-31405910-3	chr14	31405406	31406406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11771.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	84.66	66.35	39.77	95.14	70.44	38.58	66.54	54.83	40.59
Merged-chr11-29548207-3	chr11	29547697	29548697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024277)	promoter-TSS (NM_024277)	-157.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	117.27	165.42	85.1	133.59	156.75	149.5	196.45	198.09	113.66
Merged-chr12-73671705-3	chr12	73671202	73672202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	AmnSINE1|SINE|Deu	86906.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	26.31	15.21	25.9	45.21	38.72	52.25	32.74	26.53	14.36
Merged-chr1-165682652-3	chr1	165682152	165683152	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25442.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	141.3	151.14	108.22	135.62	120.36	120.57	118.29	155.2	110.54
Merged-chr11-5261768-3	chr11	5261277	5262277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032396)	promoter-TSS (NM_032396)	-167.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	84.66	49.3	27.75	105.93	55.98	64.3	83.44	38.91	24.98
Merged-chr10-66998973-3	chr10	66998461	66999461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6114.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	31.46	10.14	3.7	37.78	13.06	4.82	19.01	10.17	1.25
Merged-chr4-41465034-3	chr4	41464548	41465548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025539)	promoter-TSS (NM_025539)	-100.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	67.5	88.47	53.65	62.07	57.85	68.32	74.99	80.03	41.22
Merged-chr9-59728104-3	chr9	59727577	59728577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20313.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	179.62	219.33	134.12	221.31	181.94	180.85	264.05	262.65	139.89
Merged-chr8-45333750-3	chr8	45333242	45334242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133969)	promoter-TSS (NM_133969)	-546.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	308.34	276.01	194.24	250.99	286.44	238.73	272.5	309.52	169.25
Merged-chr4-141545982-3	chr4	141545496	141546496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030695)	promoter-TSS (NR_030695)	-166.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	372.98	338.68	304.31	435.19	334.02	297.4	283.06	310.84	197.35
Merged-chr9-101034691-4	chr9	101034228	101035228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025835, exon 1 of 15)	exon (NM_025835, exon 1 of 15)	156.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	329.5	386.14	224.76	324.54	388.14	263.64	307.35	288.29	191.73
Merged-chr5-76303976-3	chr5	76303489	76304489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305222)	promoter-TSS (NM_001305222)	-487.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	310.05	226.71	322.81	358.28	280.84	282.93	351.71	223.74	210.47
Merged-chr7-4950785-1	chr7	4950285	4951285	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13563.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	2.86	3.69	1.85	20.92	17.73	21.7	0.0	0.0	1.25
Merged-chr4-129803579-3	chr4	129803089	129804089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16890.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	124.71	132.25	80.47	120.1	128.29	120.57	114.07	123.36	44.34
Merged-chr8-126867800-3	chr8	126867303	126868303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18783.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	139.01	92.16	59.2	130.9	106.36	99.67	120.41	111.43	44.34
Merged-chr1-139454680-3	chr1	139454186	139455186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009791)	promoter-TSS (NM_009791)	-87.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	28.6	23.96	11.1	24.29	13.06	9.65	8.45	11.05	6.87
Merged-chr5-73630387-3	chr5	73629902	73630902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153568, intron 1 of 4)	intron (NM_153568, intron 1 of 4)	2019.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	13.73	10.14	11.1	17.54	7.93	13.66	7.39	5.31	8.74
Merged-chr6-38968139-3	chr6	38967642	38968642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	49156.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	57.78	33.18	35.15	55.33	36.39	72.34	63.37	61.46	46.22
Merged-chr4-34466021-3	chr4	34465517	34466517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-84598.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	6.86	5.53	6.47	7.42	6.06	20.9	10.56	3.1	9.99
Merged-chr19-47855622-3	chr19	47855113	47856113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010362, intron 2 of 5)	intron (NM_010362, intron 2 of 5)	640.0	NM_010362	14873.0	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	149.88	154.36	93.42	170.7	209.46	161.56	157.37	177.31	85.56
Merged-chr19-61227858-3	chr19	61227364	61228364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009970, intron 1 of 11)	CpG-7695	554.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	525.15	426.69	353.33	537.08	366.21	351.26	553.44	561.11	282.91
Merged-chr7-98809582-3	chr7	98809096	98810096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25516.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	42.33	26.26	14.8	63.42	26.12	25.72	41.19	37.14	24.36
Merged-chr11-103116166-3	chr11	103115678	103116678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138753)	promoter-TSS (NM_138753)	-147.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	182.49	136.85	110.07	165.31	132.02	109.32	181.66	192.78	66.82
Merged-chr10-39171896-3	chr10	39171406	39172406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8112.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	10.87	14.75	10.17	19.57	20.53	14.47	16.9	15.48	9.37
Merged-chr3-88446756-3	chr3	88446250	88447250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013658, intron 10 of 14)	HAL1|LINE|L1	-5799.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	212.23	171.87	54.57	157.21	137.15	116.55	160.54	225.51	83.06
Merged-chr6-37223173-3	chr6	37222669	37223669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76807.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	120.13	73.26	61.05	87.04	93.77	92.44	69.71	110.1	55.58
Merged-chr10-43758380-3	chr10	43757883	43758883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	12225.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	37.18	28.57	38.85	33.06	12.13	15.27	61.26	34.93	23.73
Merged-chr17-24167119-3	chr17	24166618	24167618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361533, intron 1 of 2)	intron (NM_001361533, intron 1 of 2)	1691.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	174.48	172.33	132.27	149.11	119.89	124.59	128.85	140.61	117.41
Merged-chr7-46958540-3	chr7	46958063	46959063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040695)	promoter-TSS (NM_001040695)	-45.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	36.04	18.43	31.45	42.51	36.85	39.39	45.42	39.35	19.36
Merged-chr1-91216631-3	chr1	91216131	91217131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016894, intron 2 of 2)	intron (NM_016894, intron 2 of 2)	-33673.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	24.6	11.52	1.85	18.22	7.93	3.22	11.62	8.4	6.25
Merged-chr19-5273103-3	chr19	5272587	5273587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153129)	promoter-TSS (NM_153129)	32.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	85.24	73.26	86.95	111.33	90.5	132.63	147.87	86.66	65.58
Merged-chr19-16015356-3	chr19	16014835	16015835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30260.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	41.76	40.55	46.25	35.76	37.79	53.85	78.16	59.25	54.96
Merged-chr7-16314082-3	chr7	16313596	16314596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 3 of 3)	intron (NM_133234, intron 3 of 3)	4513.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	268.29	256.2	234.94	302.27	247.72	213.81	235.53	249.38	146.76
Merged-chr5-30921709-3	chr5	30921186	30922186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133918)	TTS (NM_133918)	127.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	111.55	83.86	103.59	106.61	65.78	114.94	134.14	118.06	96.8
Merged-chr10-45067140-3	chr10	45066642	45067642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011156)	promoter-TSS (NM_011156)	-72.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	85.24	56.68	98.05	82.32	55.98	67.52	96.11	45.99	49.96
Merged-chr8-4370339-3	chr8	4369848	4370848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20760.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	40.62	37.32	32.37	32.39	26.59	35.37	62.31	38.03	39.97
Merged-chr11-75679198-3	chr11	75678696	75679696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277221)	promoter-TSS (NM_001277221)	-63.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	356.39	339.6	320.03	322.51	289.7	255.6	285.17	275.91	156.13
Merged-chr5-104021930-3	chr5	104021436	104022436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053262)	promoter-TSS (NM_053262)	-140.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	197.36	211.5	153.54	180.15	184.27	184.07	173.21	172.89	96.18
Merged-chr1-153414468-3	chr1	153413951	153414951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033736)	promoter-TSS (NR_033736)	-218.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	312.34	344.21	148.92	293.5	291.57	161.56	301.01	369.65	174.87
Merged-chr11-94629741-3	chr11	94629234	94630234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133807)	promoter-TSS (NM_133807)	-90.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	239.69	223.94	157.24	209.16	164.68	158.35	216.52	184.83	73.69
Merged-chr4-49632047-3	chr4	49631581	49632581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163263)	promoter-TSS (NM_001163263)	21.0	NM_182999	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	128.71	118.42	107.29	114.7	123.62	109.32	130.97	110.98	92.43
Merged-chr11-4637693-3	chr11	4637184	4638184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029291)	promoter-TSS (NM_029291)	-109.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	95.53	123.03	101.74	95.14	100.77	104.49	137.3	140.17	56.83
Merged-chr10-68249527-3	chr10	68249024	68250024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29202.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	132.14	148.83	83.25	182.17	125.49	90.83	141.53	158.3	74.94
Merged-chr12-29291157-3	chr12	29290666	29291666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149237.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	22.88	15.21	10.17	6.07	20.53	27.33	11.62	19.9	18.11
Merged-chr2-178414487-3	chr2	178414064	178415064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085501)	promoter-TSS (NM_001085501)	30.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	27.46	14.28	31.45	27.66	22.86	52.25	23.24	19.46	19.36
Merged-chr4-106678973-3	chr4	106678471	106679471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028209)	promoter-TSS (NM_028209)	-27.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	11.44	16.13	11.1	25.64	22.39	9.65	28.52	21.67	11.24
Merged-chr11-114694163-3	chr11	114693632	114694632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 3 of 13)	intron (NM_053273, intron 3 of 13)	18664.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	78.37	80.64	58.27	85.01	82.57	65.91	69.71	108.77	81.19
Merged-chr12-100200210-4	chr12	100199724	100200724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	80.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	243.69	186.62	220.14	222.66	176.81	180.85	252.43	195.0	153.63
Merged-chr11-58954600-3	chr11	58954098	58955098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_134309)	promoter-TSS (NR_134309)	-86.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	176.76	223.48	139.67	128.2	222.99	159.15	196.45	268.4	101.8
Merged-chr2-79255923-2	chr2	79255427	79256427	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 1 of 27)	intron (NM_010576, intron 1 of 27)	501.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	221.96	263.57	272.86	244.25	209.46	200.14	218.63	244.52	163.63
Merged-chr4-134762591-3	chr4	134762096	134763096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	5408.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	163.04	159.89	152.62	221.98	158.61	167.99	178.5	239.65	94.93
Merged-chr5-3502780-3	chr5	3502298	3503298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-41035.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	304.9	276.47	199.79	316.44	258.45	205.77	254.54	332.95	138.65
Merged-chr4-145246885-3	chr4	145246380	145247380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011610)	promoter-TSS (NM_011610)	-10.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	128.14	126.25	152.62	136.97	127.82	127.8	156.32	142.38	72.45
Merged-chr2-117272199-1	chr2	117271699	117272699	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026620)	TTS (NM_026620)	22460.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	7.44	7.37	16.65	3.37	3.73	12.86	12.67	3.1	3.12
Merged-chr13-111944326-3	chr13	111943823	111944823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76387.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	71.51	43.77	33.3	76.24	49.92	24.92	31.69	33.6	19.36
Merged-chr15-80035053-3	chr15	80034557	80035557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20249.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	127.57	99.07	96.2	126.85	87.24	135.84	87.66	109.66	93.68
Merged-chr8-47676041-1	chr8	47675541	47676541	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023503)	promoter-TSS (NM_023503)	-882.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	157.89	186.62	146.14	194.99	128.76	147.09	193.28	210.91	159.88
Merged-chr12-13269240-4	chr12	13268741	13269741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027706, exon 1 of 52)	exon (NM_027706, exon 1 of 52)	114.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	37.76	45.16	20.35	51.95	49.92	42.6	106.67	96.83	43.72
Merged-chr17-17583536-3	chr17	17583022	17584022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	40967.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	32.61	48.38	37.92	21.59	21.46	42.6	52.81	49.08	22.48
Merged-chr6-89280769-3	chr6	89280310	89281310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	104.69	98.61	102.67	124.82	89.57	114.14	118.29	106.56	85.56
Merged-chr17-27925777-3	chr17	27925278	27926278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	16472.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	28.6	13.82	3.7	30.36	10.26	8.84	32.74	17.24	8.12
Merged-chr11-109413794-3	chr11	109413267	109414267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12179.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	26.31	8.75	0.92	53.98	32.66	16.88	22.18	11.94	7.49
Merged-chr13-67755141-3	chr13	67754639	67755639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001130)	promoter-TSS (NM_001001130)	-5.0	NM_001001130	22746.0	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	46.34	47.46	43.47	74.22	33.59	58.68	96.11	101.26	49.34
Merged-chr6-43546714-3	chr6	43546218	43547218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	104289.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	15.45	17.05	12.95	13.49	17.26	20.9	12.67	5.75	9.37
Merged-chr7-64142154-1	chr7	64141654	64142654	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11681.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	327.21	385.22	222.91	292.15	323.76	258.82	307.35	349.75	160.5
Merged-chr2-36230504-3	chr2	36230009	36231009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	83.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	84.66	83.4	97.12	87.04	110.1	94.85	119.35	102.58	34.35
Merged-chr19-37495460-3	chr19	37494923	37495923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30169.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	86.95	78.33	89.72	52.63	53.65	79.58	97.17	98.6	76.82
Merged-chr11-29219249-1	chr11	29218749	29219749	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_134034, exon 16 of 16)	3' UTR (NM_134034, exon 16 of 16)	28023.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	1.72	5.99	3.7	20.92	14.0	26.53	1.06	4.86	1.87
Merged-chr17-22424211-3	chr17	22423709	22424709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331195)	promoter-TSS (NM_001331195)	7.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	27.46	41.01	38.85	43.86	49.45	52.25	30.63	34.93	20.61
Merged-chr2-60843246-3	chr2	60842763	60843763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	38175.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	139.01	104.6	51.8	99.86	90.04	57.87	69.71	102.14	48.09
Merged-chr7-25239373-3	chr7	25238880	25239880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1529.0	NM_001031667	606496.0	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	168.18	164.96	123.02	127.52	88.17	154.33	139.42	167.58	74.32
Merged-chr5-31494713-3	chr5	31494253	31495253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133756)	promoter-TSS (NM_133756)	12.0	NM_133756	74254.0	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	14.3	13.36	16.65	15.52	13.06	17.68	22.18	11.5	8.74
Merged-chr5-145139996-3	chr5	145139432	145140432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310771)	promoter-TSS (NM_001310771)	157.0	NM_001033313	231887.0	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	240.26	193.07	124.87	209.84	172.61	145.49	204.9	179.08	89.93
Merged-chr13-51847430-2	chr13	51846931	51847931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011817, exon 2 of 4)	exon (NM_011817, exon 2 of 4)	756.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	157.31	171.87	143.37	172.05	144.62	147.09	179.55	168.02	158.63
Merged-chr9-106332907-1	chr9	106332407	106333407	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-35725.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	1.72	1.38	1.85	0.67	1.4	1.61	19.01	31.39	18.74
Merged-chr10-70040469-3	chr10	70039967	70040967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56654.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	18.88	18.89	17.57	24.96	13.53	14.47	34.85	42.89	31.85
Merged-chr5-5360040-3	chr5	5359546	5360546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20205.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	100.11	93.54	56.42	101.21	96.1	63.5	57.03	88.88	42.47
Merged-chr5-64884420-3	chr5	64883905	64884905	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48294.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	188.78	145.15	104.52	194.99	115.69	117.35	152.09	193.67	104.3
Merged-chr12-12270685-3	chr12	12270172	12271172	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	8533.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	213.95	247.44	123.02	199.04	179.14	144.68	163.71	181.73	108.67
Merged-chr16-91688816-3	chr16	91688312	91689312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021720)	promoter-TSS (NM_021720)	-84.0	NM_021720	60364.0	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	213.38	124.87	96.2	170.03	104.03	127.0	140.47	91.97	84.94
Merged-chr9-7595395-3	chr9	7594887	7595887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23991.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	57.78	52.07	27.75	47.9	51.78	57.07	57.03	61.46	26.85
Merged-chr14-118938849-3	chr14	118938321	118939321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	889.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	152.74	158.51	89.72	124.15	116.16	92.44	95.06	104.35	74.32
Merged-chr11-118363243-3	chr11	118362750	118363750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7839.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	118.42	86.17	60.12	172.05	99.83	137.45	91.89	91.09	31.85
Merged-chr5-150522625-3	chr5	150522125	150523125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009765)	promoter-TSS (NM_009765)	4.0	NM_001081001	12190.0	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	97.25	90.77	49.95	78.94	89.57	78.77	103.51	100.81	51.21
Merged-chrX-140543211-3	chrX	140542721	140543721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_122039)	promoter-TSS (NR_122039)	-553.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	70.36	89.85	84.17	74.89	62.51	76.36	84.49	113.64	84.31
Merged-chr16-29993193-3	chr16	29992698	29993698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14074.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	17.73	17.97	37.0	24.96	22.86	38.58	24.29	12.38	24.36
Merged-chr8-122430446-3	chr8	122429954	122430954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	2486.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	419.89	328.08	199.79	360.97	227.19	229.88	347.48	341.8	171.12
Merged-chr6-136941379-3	chr6	136940871	136941871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301301, intron 1 of 5)	intron (NM_001301301, intron 1 of 5)	132.0	NM_001301305	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	81.23	68.2	89.72	69.5	60.18	94.04	148.92	112.31	64.95
Merged-chr4-59565985-3	chr4	59565498	59566498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-15565.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	35.47	50.23	18.5	41.16	33.12	45.82	17.96	19.9	18.74
Merged-chr17-70852368-3	chr17	70851880	70852880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164075)	promoter-TSS (NM_001164075)	-646.0	NM_001164075	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	516.56	534.05	277.49	526.28	558.88	296.6	428.81	621.24	224.83
Merged-chr7-16781277-3	chr7	16780790	16781790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009201)	promoter-TSS (NM_009201)	-56.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	14.3	10.6	12.02	11.47	10.26	24.92	14.79	3.98	6.25
Merged-chr16-17911400-3	chr16	17910889	17911889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022408)	promoter-TSS (NM_022408)	-41.0	NM_001081633	27886.0	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el|Ess2	DiGeorge syndrome critical region gene 14	protein-coding	32.04	32.25	35.15	21.59	32.19	42.6	38.02	29.63	19.36
Merged-chr15-83172291-3	chr15	83171808	83172808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-100.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	443.34	412.4	273.79	449.36	415.66	313.48	365.44	422.27	237.32
Merged-chr19-29647770-3	chr19	29647279	29648279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 1 of 14)	intron (NM_001362131, intron 1 of 14)	636.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	62.35	46.54	60.12	65.45	46.18	84.4	76.05	57.04	50.59
Merged-chr7-113716324-1	chr7	113715824	113716824	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-49674.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	2.86	3.23	5.55	8.1	2.33	13.66	4.22	0.88	0.0
Merged-chr11-115187900-3	chr11	115187409	115188409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025400)	promoter-TSS (NM_025400)	422.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	561.18	444.66	309.86	618.04	445.98	360.9	427.76	573.93	229.2
Merged-chr11-80169821-3	chr11	80169331	80170331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	B3|SINE|B2	-14041.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	216.24	126.72	123.94	201.74	109.63	159.95	170.05	177.31	133.65
Merged-chr11-70562419-3	chr11	70561921	70562921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	-460.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	64.07	52.99	49.95	53.98	41.52	38.58	52.81	41.12	31.23
Merged-chr9-7837077-3	chr9	7836585	7837585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291503)	promoter-TSS (NM_001291503)	-28.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	516.56	587.04	355.18	500.64	614.39	327.95	420.36	651.75	251.06
Merged-chr8-11556928-2	chr8	11556513	11557513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011919, exon 1 of 2)	exon (NM_011919, exon 1 of 2)	556.0	NM_011919	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	148.73	157.13	139.67	99.18	72.31	109.32	128.85	93.74	94.3
Merged-chr11-70021599-3	chr11	70021106	70022106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 1 of 19)	CpG	3001.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	22.88	13.82	12.02	12.82	10.73	12.06	17.96	8.84	17.49
Merged-chr6-137697033-3	chr6	137696536	137697536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38046.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	80.09	73.26	45.32	96.48	95.17	61.09	58.09	75.61	45.59
Merged-chr13-93237829-3	chr13	93237311	93238311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45394.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	69.79	69.58	62.9	43.18	32.19	54.66	47.53	44.22	62.45
Merged-chr16-87706293-3	chr16	87705792	87706792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	7338.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	28.03	28.57	27.75	33.06	27.06	29.74	32.74	18.57	17.49
Merged-chr9-106368552-3	chr9	106368058	106369058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153459)	promoter-TSS (NM_153459)	-74.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	164.75	175.56	172.04	120.1	139.95	153.52	172.16	140.17	106.17
Merged-chr1-131910403-3	chr1	131909908	131910908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175294)	promoter-TSS (NM_175294)	-50.0	NM_001145804	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	282.02	226.71	216.44	319.82	227.66	173.62	246.09	219.76	202.35
Merged-chr5-36696733-3	chr5	36696233	36697233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081232)	promoter-TSS (NM_001081232)	-712.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	74.94	78.33	75.85	66.8	79.77	73.14	110.9	126.46	69.32
Merged-chr12-52604914-3	chr12	52604412	52605412	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2590.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	244.27	254.35	113.77	215.91	230.46	151.92	235.53	274.14	126.15
Merged-chr8-22185761-3	chr8	22185273	22186273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004140)	promoter-TSS (NM_001004140)	46.0	NM_001004140	80986.0	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	14.87	8.75	20.35	10.8	7.93	27.33	14.79	15.48	11.24
Merged-chr18-46574404-3	chr18	46573887	46574887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	146.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	94.96	135.93	132.27	96.48	104.96	127.0	140.47	137.07	71.2
Merged-chr10-8741176-3	chr10	8740681	8741681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	144889.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	27.46	15.67	34.22	11.47	7.46	22.51	19.01	16.8	14.99
Merged-chr18-4055713-3	chr18	4055232	4056232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4A|LTR|ERV1	-110100.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	14.87	21.2	11.1	8.77	18.19	35.37	32.74	19.46	17.49
Merged-chr17-74316454-3	chr17	74315978	74316978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146223)	promoter-TSS (NM_001146223)	-45.0	NM_001146223	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	80.66	72.8	64.75	92.44	83.04	73.95	80.27	88.43	43.72
Merged-chr7-101310826-3	chr7	101310322	101311322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6264.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	179.05	130.86	112.84	167.33	132.49	141.47	168.99	198.53	101.17
Merged-chr1-65177667-3	chr1	65177186	65178186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1456.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	204.22	282.92	131.34	286.08	390.0	240.33	309.46	467.81	143.64
Merged-chr18-46745945-3	chr18	46745428	46746428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009681, intron 1 of 5)	intron (NM_009681, intron 1 of 5)	4052.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	18.88	27.65	8.32	18.22	9.8	15.27	16.9	11.94	9.99
Merged-chr7-45923084-3	chr7	45922587	45923587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1661.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	108.69	99.99	126.72	91.76	64.38	148.7	128.85	122.04	94.3
Merged-chr7-132859879-3	chr7	132859379	132860379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	654.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	169.33	221.18	193.32	161.26	206.66	207.38	245.04	235.23	178.61
Merged-chr17-28232624-3	chr17	28232126	28233126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011145)	promoter-TSS (NM_011145)	-128.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	292.32	244.68	209.96	225.36	284.57	158.35	237.64	272.82	121.16
Merged-chr13-8996110-3	chr13	8995603	8996603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027000)	promoter-TSS (NM_027000)	-91.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	454.21	432.68	278.41	361.65	367.61	286.15	364.38	460.74	184.86
Merged-chr5-114773543-3	chr5	114773049	114774049	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019834)	promoter-TSS (NM_019834)	-57.0	NM_001347400	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	324.93	221.64	237.71	419.0	251.91	224.26	271.44	194.11	153.63
Merged-chrUn_JH584304-35963-1	chrUn_JH584304	35463	36463	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	23726.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	52.81	36.7	0.0
Merged-chr11-87442864-3	chr11	87442347	87443347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	15256.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	124.71	83.4	35.15	122.8	92.84	68.32	83.44	89.32	30.6
Merged-chr11-8597100-3	chr11	8596609	8597609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	67426.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	49.77	44.24	32.37	52.63	40.59	39.39	33.8	33.16	20.61
Merged-chr17-47629558-3	chr17	47629032	47630032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1158.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	76.66	62.67	63.82	82.99	76.04	59.48	130.97	82.24	51.21
Merged-chrX-53753067-3	chrX	53752552	53753552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001200013, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	4779.0	NM_001200013	75514.0	Mm.116929	NM_001200013	ENSMUSG00000054727	1700013H16Rik	Slx2|Xlr6	RIKEN cDNA 1700013H16 gene	protein-coding	9.15	10.6	8.32	6.75	2.33	11.25	6.34	7.96	2.5
Merged-chr12-101976001-6	chr12	101975546	101976546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016856)	promoter-TSS (NM_016856)	72.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	420.46	409.18	340.38	350.85	402.13	337.59	362.27	343.12	213.59
Merged-chr12-83929359-3	chr12	83928851	83929851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7417.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	18.31	37.78	26.82	29.69	24.26	43.4	29.57	34.05	31.85
Merged-chr5-146261156-3	chr5	146260661	146261661	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 2 of 12)	LSU-rRNA_Hsa|rRNA|rRNA	29911.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	61.21	50.23	57.35	32.39	25.19	33.76	22.18	16.36	54.33
Merged-chr10-18237441-1	chr10	18236941	18237941	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	1.72	4.15	9.25	7.42	4.2	4.82	1.06	3.54	1.25
Merged-chr11-3136820-2	chr11	3136278	3137278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 23 of 32)	intron (NM_030207, intron 23 of 32)	12757.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	47.48	33.18	97.12	58.7	43.85	113.33	0.0	1.77	105.55
Merged-chr19-55293322-3	chr19	55292839	55293839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 17 of 21)	intron (NM_027976, intron 17 of 21)	22697.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	41.19	33.64	36.07	38.46	26.59	34.56	47.53	36.26	24.36
Merged-chr1-86442220-3	chr1	86441709	86442709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15880.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	226.53	150.68	80.47	246.95	197.8	125.39	198.56	169.79	112.42
Merged-chr12-33045839-3	chr12	33045341	33046341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 13 of 19)	intron (NM_001024478, intron 13 of 19)	47034.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.72	5.99	5.55	12.14	4.2	0.0	30.63	26.09	5.0
Merged-chr12-91756875-3	chr12	91756382	91757382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	29554.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	74.94	66.81	47.17	87.04	50.38	55.46	86.61	107.89	51.21
Merged-chr2-122771195-3	chr2	122770686	122771686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027888)	promoter-TSS (NR_027888)	-527.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	32.61	35.02	32.37	35.09	26.12	45.82	35.91	46.87	31.23
Merged-chr15-50703969-3	chr15	50703449	50704449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	185100.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	15.45	29.49	11.1	26.99	13.06	8.84	17.96	8.84	8.74
Merged-chr16-94569081-2	chr16	94568584	94569584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1122.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	216.24	174.18	182.22	190.27	153.48	107.71	174.27	163.16	99.3
Merged-chr14-7997386-3	chr14	7996881	7997881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3199.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	13.16	9.22	11.1	10.8	5.6	6.43	6.34	9.29	9.99
Merged-chr11-85812664-3	chr11	85812162	85813162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	19726.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	48.05	44.7	51.8	51.95	50.38	63.5	38.02	43.33	31.85
Merged-chr5-138683632-1	chr5	138683132	138684132	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60773.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	84.66	112.89	56.42	118.08	135.29	142.27	80.27	75.17	76.19
Merged-chr19-29380740-3	chr19	29380240	29381240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 4 of 6)	intron (NM_021893, intron 4 of 6)	13302.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	21.17	20.74	19.42	49.93	27.99	35.37	46.47	31.39	24.98
Merged-chr5-143180827-3	chr5	143180311	143181311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045482)	promoter-TSS (NM_001045482)	-36.0	NM_001045482	57782.0	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	35.47	30.87	59.2	31.71	32.66	45.82	25.35	24.32	28.1
Merged-chr19-53273574-3	chr19	53273054	53274054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-18349.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	112.12	67.27	35.15	165.31	122.23	111.73	83.44	72.07	51.21
Merged-chr7-81860243-3	chr7	81859747	81860747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1246.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	151.59	183.39	138.74	170.7	177.27	142.27	118.29	144.15	109.29
Merged-chr4-57948115-3	chr4	57947616	57948616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	8295.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	163.61	152.98	62.9	223.33	198.27	132.63	171.1	176.87	76.19
Merged-chr9-115309737-1	chr9	115309237	115310237	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024222, intron 1 of 15)	CpG	684.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	190.49	192.15	170.19	194.32	209.46	156.74	194.34	172.0	121.16
Merged-chr17-35997154-3	chr17	35996659	35997659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	2655.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	28.03	19.81	13.87	17.54	12.13	8.84	29.57	16.36	7.49
Merged-chr8-117288121-3	chr8	117287620	117288620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	31101.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	33.18	29.95	24.05	70.85	44.78	62.7	27.46	32.72	29.98
Merged-chr5-92107462-3	chr5	92106951	92107951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-23707.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	31.46	36.86	42.55	24.29	21.93	40.99	30.63	29.18	33.1
Merged-chr6-137696667-3	chr6	137696159	137697159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38423.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	58.92	49.76	45.32	72.87	68.58	68.32	52.81	57.04	49.34
Merged-chr5-121389106-3	chr5	121388607	121389607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3492.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	161.89	135.01	84.17	144.39	107.76	138.25	135.19	208.7	118.66
Merged-chr9-52288065-3	chr9	52287564	52288564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119953.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	8.01	17.97	11.1	14.17	9.8	6.43	7.39	4.86	6.25
Merged-chr11-4135262-3	chr11	4134759	4135759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027859)	promoter-TSS (NM_027859)	99.0	NM_027859	71673.0	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	65.79	61.28	77.7	83.66	58.31	109.32	79.21	49.96	45.59
Merged-chr9-21592843-3	chr9	21592347	21593347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-16.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	174.48	113.35	98.05	171.38	146.02	160.76	163.71	171.56	86.18
Merged-chr7-99469781-3	chr7	99469284	99470284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028145, intron 2 of 6)	intron (NM_028145, intron 2 of 6)	3780.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	58.92	54.83	37.0	60.72	55.05	75.56	105.62	110.1	44.97
Merged-chr15-57912143-3	chr15	57911642	57912642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167679)	promoter-TSS (NM_001167679)	-57.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	204.8	186.62	63.82	138.99	102.63	56.27	167.93	217.55	111.79
Merged-chr9-124125765-3	chr9	124125246	124126246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009917, exon 2 of 2)	3' UTR (NM_009917, exon 2 of 2)	4203.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	203.65	170.03	118.39	180.82	162.34	122.18	178.5	220.64	124.28
Merged-chr15-76251927-3	chr15	76251413	76252413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3722.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	74.94	80.18	76.77	62.75	55.51	62.7	97.17	137.96	63.08
Merged-chr12-91736428-3	chr12	91735930	91736930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 3 of 6)	intron (NM_175367, intron 3 of 6)	50006.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	129.28	117.5	99.89	180.82	158.61	139.06	132.02	185.27	85.56
Merged-chr13-60876690-3	chr13	60876183	60877183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-12267.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	38.33	61.75	48.1	58.7	76.04	82.79	115.12	99.49	52.46
Merged-chr3-142882124-3	chr3	142881656	142882656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178654)	promoter-TSS (NM_178654)	-152.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	262.0	231.31	220.14	235.48	188.94	170.4	221.8	191.46	148.64
Merged-chr5-67822257-3	chr5	67821756	67822756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	25175.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	117.27	161.27	78.62	136.97	146.48	124.59	160.54	196.32	109.29
Merged-chrX-155622519-1	chrX	155622019	155623019	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	intron (NM_001093750, intron 1 of 2)	808.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	4.0	2.3	0.0	3.37	1.87	0.0	0.0	0.88	1.25
Merged-chr1-172514133-3	chr1	172513628	172514628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7002.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	165.9	116.58	26.82	102.56	43.85	36.17	184.83	185.71	103.67
Merged-chr13-107021897-3	chr13	107021394	107022394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015471)	promoter-TSS (NR_015471)	220.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	36.61	32.25	28.67	33.74	15.86	34.56	35.91	19.9	28.1
Merged-chr11-3539313-3	chr11	3538783	3539783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284429)	promoter-TSS (NM_001284429)	9.0	NM_013870	29856.0	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	13.73	10.6	4.62	18.89	8.86	14.47	11.62	8.84	5.0
Merged-chr3-84883983-3	chr3	84883489	84884489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	B4|SINE|B4	19844.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	30.89	24.88	24.05	52.63	52.72	46.62	34.85	18.57	15.61
Merged-chr6-38641402-3	chr6	38640910	38641910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	24.6	15.67	16.65	25.64	14.0	30.54	23.24	14.15	13.74
Merged-chr18-80313078-3	chr18	80312588	80313588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51166.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	58.35	52.07	64.75	44.53	40.12	59.48	48.58	63.67	48.71
Merged-chr15-34495338-3	chr15	34494858	34495858	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008287)	promoter-TSS (NM_008287)	47.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	23.45	32.72	22.2	39.13	40.12	36.97	41.19	18.57	18.11
Merged-chr10-80261062-3	chr10	80260558	80261558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347119)	promoter-TSS (NM_001347119)	-46.0	NM_010255	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	98.39	73.26	117.47	93.11	61.11	140.66	92.94	118.94	94.93
Merged-chr8-111300347-3	chr8	111299832	111300832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146218)	promoter-TSS (NM_146218)	-110.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	66.93	74.19	70.3	62.75	65.78	69.13	82.38	108.33	64.33
Merged-chr13-55600034-3	chr13	55599539	55600539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311137, exon 1 of 5)	5' UTR (NM_001311137, exon 1 of 5)	143.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	52.63	35.94	33.3	57.35	51.32	71.54	83.44	70.75	26.23
Merged-chr7-143822944-3	chr7	143822437	143823437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007856)	promoter-TSS (NM_007856)	-85.0	NM_030221	78914.0	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	136.15	155.28	135.04	114.03	118.49	110.92	124.63	170.68	87.43
Merged-chr2-52884445-3	chr2	52883952	52884952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	26584.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	72.65	69.58	54.57	78.94	64.38	94.04	65.48	73.4	68.07
Merged-chr2-145952971-1	chr2	145952471	145953471	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175280, intron 6 of 6)	intron (NM_175280, intron 6 of 6)	18187.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.57	1.38	1.85	2.7	2.33	1.61	19.01	8.84	3.75
Merged-chr19-8898029-3	chr19	8897523	8898523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008060)	promoter-TSS (NM_008060)	-34.0	NM_001293621	14376.0	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	143.59	124.87	130.42	127.52	83.51	122.98	129.91	103.47	75.57
Merged-chr6-58596521-3	chr6	58596022	58597022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011920)	promoter-TSS (NM_011920)	-150.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	74.37	69.58	70.3	72.19	58.31	62.7	71.82	72.96	66.2
Merged-chr4-43757365-3	chr4	43756847	43757847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040667, exon 3 of 4)	non-coding (NR_040667, exon 3 of 4)	5488.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	50.34	45.16	32.37	70.17	64.84	65.11	19.01	15.92	7.49
Merged-chr9-90272737-3	chr9	90272252	90273252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	128.71	115.66	96.2	103.23	83.04	94.04	177.44	183.06	115.54
Merged-chr14-121379278-5	chr14	121378753	121379753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145465)	promoter-TSS (NM_145465)	-23.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	131.57	106.9	141.52	135.62	99.83	151.11	173.21	111.87	103.67
Merged-chr13-42246075-3	chr13	42245536	42246536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55440.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	212.8	178.78	108.22	186.9	170.28	121.37	164.76	154.76	60.58
Merged-chr12-55434062-3	chr12	55433554	55434554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35229.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	105.26	112.43	98.97	83.66	107.76	94.04	138.36	168.02	89.31
Merged-chr8-71272599-3	chr8	71272086	71273086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	4.0	NM_001163042	76478.0	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	151.02	117.96	159.09	139.67	91.44	150.31	154.2	122.48	96.8
Merged-chr5-3494585-3	chr5	3494162	3495162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-49171.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	72.08	61.75	32.37	130.9	87.7	101.28	52.81	63.23	36.22
Merged-chr15-73595305-3	chr15	73594805	73595805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	1221.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	65.79	65.89	54.57	80.29	65.31	48.23	54.92	84.01	23.73
Merged-chr13-21787393-3	chr13	21786895	21787895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	-93.0	NM_178202	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	73.22	51.15	58.27	73.54	72.78	51.44	59.15	79.15	55.58
Merged-chr16-58481379-3	chr16	58480869	58481869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	42057.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	81.8	91.7	50.87	93.79	76.51	114.14	88.72	78.71	84.94
Merged-chr17-87315397-3	chr17	87314844	87315844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32458.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	20.59	17.97	11.1	33.06	21.46	8.04	15.84	6.19	3.75
Merged-chr5-144223670-3	chr5	144223169	144224169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356992)	promoter-TSS (NM_001356992)	-54.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	46.34	62.21	46.25	85.69	66.24	61.89	62.31	64.56	27.48
Merged-chr11-20201196-3	chr11	20200670	20201670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-242.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	393.57	313.33	247.89	354.9	246.78	218.63	294.68	292.27	148.64
Merged-chr1-52500566-3	chr1	52500076	52501076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008667)	promoter-TSS (NM_008667)	-128.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	273.44	136.85	130.42	246.95	86.3	122.18	199.62	77.38	68.07
Merged-chr15-99972735-3	chr15	99972204	99973204	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284523)	promoter-TSS (NM_001284523)	-76.0	NM_001024526	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	360.39	314.72	232.16	384.59	345.22	298.21	324.25	373.63	176.12
Merged-chr4-126753618-3	chr4	126753166	126754166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011986)	promoter-TSS (NM_011986)	99.0	NM_001355412	26562.0	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	127.0	119.8	137.82	121.45	148.35	160.76	148.92	127.79	93.05
Merged-chr6-34862624-3	chr6	34862138	34863138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197986)	promoter-TSS (NM_197986)	-508.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	374.12	408.25	228.46	462.86	526.69	281.33	415.08	611.96	212.96
Merged-chr12-100778955-3	chr12	100778447	100779447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361020)	promoter-TSS (NM_001361020)	-110.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	161.32	173.72	100.82	188.92	171.68	154.33	149.98	137.07	86.18
Merged-chr16-58507082-1	chr16	58506582	58507582	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	B3|SINE|B2	16344.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	132.72	130.86	117.47	126.85	77.44	69.13	174.27	261.32	118.04
Merged-chr9-104972991-3	chr9	104972480	104973480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 7 of 15)	intron (NM_028719, intron 7 of 15)	-80288.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	26.89	23.96	37.0	28.34	25.66	26.53	24.29	13.27	13.74
Merged-chr1-105993967-3	chr1	105993476	105994476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	CpG	3570.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	158.46	149.75	152.62	204.44	151.62	106.9	168.99	172.0	76.82
Merged-chr12-9030150-3	chr12	9029670	9030670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	173.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	342.66	453.41	309.86	324.54	493.57	325.53	405.58	438.63	242.32
Merged-chr16-73647623-3	chr16	73647122	73648122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	694445.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	21.74	22.12	15.72	56.68	54.58	40.19	68.65	51.29	48.09
Merged-chr8-115555649-3	chr8	115555151	115556151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151243.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	16.02	10.6	5.55	18.22	13.06	9.65	5.28	10.61	2.5
Merged-chr11-101984837-3	chr11	101984321	101985321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028207)	promoter-TSS (NM_028207)	-30.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	343.8	236.84	239.56	331.29	235.12	227.47	273.55	285.2	153.01
Merged-chr19-12440541-3	chr19	12440023	12441023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	12618.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	278.02	205.51	162.79	269.89	189.4	199.34	283.06	287.41	150.51
Merged-chr3-51333458-3	chr3	51332969	51333969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	7175.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	398.15	442.35	169.27	441.94	508.96	270.88	348.54	493.02	145.51
Merged-chr7-64001769-3	chr7	64001252	64002252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62837.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	37.18	28.57	42.55	29.01	26.59	41.8	52.81	28.74	17.49
Merged-chr2-73003252-3	chr2	73002763	73003763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22817.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	24.6	20.74	10.17	39.81	32.66	36.97	39.08	35.82	16.24
Merged-chr7-116608585-3	chr7	116608102	116609102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	104233.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	32.04	36.4	55.5	24.96	30.79	20.09	47.53	56.16	25.61
Merged-chr13-3779968-3	chr13	3779460	3780460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	24358.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	32.61	17.97	22.2	23.62	27.52	16.08	17.96	11.05	11.24
Merged-chr1-133025364-3	chr1	133024865	133025865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	51.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	222.53	285.69	191.47	221.31	270.11	208.18	223.91	234.35	145.51
Merged-chr2-157428621-3	chr2	157428145	157429145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	4352.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	56.06	39.17	44.4	64.1	41.52	63.5	26.4	24.76	11.87
Merged-chr19-47865703-3	chr19	47865220	47866220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-74.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	54.35	52.07	37.0	49.93	42.92	56.27	52.81	62.79	41.84
Merged-chr4-3938697-3	chr4	3938189	3939189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019969)	promoter-TSS (NM_019969)	-199.0	NR_104355	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	76.66	57.6	63.82	69.5	69.98	57.07	74.99	61.46	48.71
Merged-chr9-35050197-3	chr9	35049723	35050723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 9 of 10)	intron (NM_009178, intron 9 of 10)	-66505.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	147.02	158.97	106.37	163.28	135.75	143.07	142.59	184.38	83.69
Merged-chr4-3607414-3	chr4	3606909	3607909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32530.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	24.03	32.72	37.92	10.12	9.33	12.86	39.08	49.96	32.48
Merged-chr7-107594578-3	chr7	107594066	107595066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008905)	promoter-TSS (NM_008905)	-485.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	170.47	191.69	175.74	168.0	119.43	162.37	184.83	229.04	114.91
Merged-chr12-70111594-3	chr12	70111082	70112082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104398)	promoter-TSS (NR_104398)	47.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	155.03	147.45	147.99	145.74	117.56	171.21	122.52	83.57	81.81
Merged-chr19-21144841-3	chr19	21144364	21145364	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40154.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	27.46	31.33	19.42	19.57	30.79	34.56	43.3	34.05	18.74
Merged-chr16-11175699-3	chr16	11175203	11176203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 1 of 22)	intron (NR_027502, intron 1 of 22)	690.0	NR_027502	106205.0	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	442.77	481.98	345.01	371.09	346.15	269.27	340.09	421.39	257.31
Merged-chr10-20312415-3	chr10	20311934	20312934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-35.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	501.12	551.1	371.83	435.19	473.04	372.96	417.19	510.7	297.9
Merged-chr18-34759413-5	chr18	34758933	34759933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357456, exon 1 of 5)	5' UTR (NM_001357456, exon 1 of 5)	106.0	NM_001357457	66306.0	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	222.53	196.29	182.22	209.84	177.27	156.74	283.06	254.25	128.65
Merged-chr9-7868993-3	chr9	7868472	7869472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	4198.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	229.97	258.96	170.19	182.85	185.2	187.28	252.43	279.01	161.75
Merged-chr9-98563657-3	chr9	98563164	98564164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015827)	promoter-TSS (NM_015827)	-53.0	NR_029444	75881.0	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	121.85	197.22	159.09	134.94	185.2	134.23	134.14	119.83	78.07
Merged-chr7-17027020-3	chr7	17026508	17027508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011155, intron 1 of 12)	intron (NM_011155, intron 1 of 12)	906.0	NM_011155	19060.0	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	118.42	137.77	86.95	120.1	95.17	109.32	201.73	230.81	96.18
Merged-chr11-46795817-3	chr11	46795305	46796305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14994.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	12.01	14.28	5.55	21.59	9.8	19.29	25.35	20.34	11.24
Merged-chr8-72303835-3	chr8	72303358	72304358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15204.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	48.05	73.73	68.45	47.23	34.52	36.97	79.21	101.7	63.08
Merged-chr9-100642857-2	chr9	100642359	100643359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357264)	promoter-TSS (NM_001357264)	-589.0	NM_009282	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	221.38	219.33	186.84	191.62	181.01	161.56	183.78	225.51	134.9
Merged-chr1-91251581-3	chr1	91251096	91252096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1030.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	260.28	306.42	185.92	221.31	189.4	178.44	264.05	294.93	167.37
Merged-chr19-26606709-3	chr19	26606203	26607203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	1543.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	92.1	92.62	106.37	69.5	57.38	68.32	71.82	54.83	71.82
Merged-chr5-90771556-3	chr5	90771065	90772065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019932)	promoter-TSS (NM_019932)	-870.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	75.51	92.16	54.57	93.11	71.38	72.34	58.09	87.99	46.22
Merged-chr5-113634062-3	chr5	113633562	113634562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	9541.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	222.53	199.06	114.69	240.2	185.67	145.49	231.3	240.54	101.17
Merged-chr11-96975029-3	chr11	96974523	96975523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	2665.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	81.8	106.44	84.17	61.4	74.64	73.95	74.99	107.0	81.81
Merged-chr2-148487083-3	chr2	148486575	148487575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43540.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	41.76	42.85	24.05	38.46	22.86	24.11	30.63	18.57	19.98
Merged-chr14-10453123-3	chr14	10452619	10453619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	339.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	17.73	18.43	7.4	8.1	14.93	8.04	15.84	11.5	9.37
Merged-chr9-24512136-3	chr9	24511671	24512671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9031.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	54.92	64.05	34.22	68.82	48.98	46.62	64.43	50.85	39.97
Merged-chr6-124309125-3	chr6	124308610	124309610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053094, exon 4 of 17)	exon (NM_053094, exon 4 of 17)	4459.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	49.77	55.75	37.92	61.4	66.71	61.09	58.09	68.09	43.72
Merged-chr14-26579523-3	chr14	26579032	26580032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-18.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	201.36	201.82	225.69	238.18	236.05	160.76	196.45	186.59	138.65
Merged-chr5-24165037-3	chr5	24164542	24165542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346582)	promoter-TSS (NM_001346582)	79.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	172.19	197.22	127.64	157.88	192.67	126.19	227.08	216.66	103.05
Merged-chr15-6579405-3	chr15	6578880	6579880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278269)	promoter-TSS (NM_001278269)	-467.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	163.04	217.49	134.12	155.19	163.28	148.7	163.71	189.25	140.52
Merged-chr4-62360540-3	chr4	62360056	62361056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175090)	promoter-TSS (NM_175090)	40.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	333.51	363.56	212.74	277.31	305.56	221.04	269.33	328.53	175.49
Merged-chr12-85284413-3	chr12	85283894	85284894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3959.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	56.63	51.15	24.97	35.76	30.79	30.54	36.97	28.3	26.23
Merged-chr12-55080343-4	chr12	55079831	55080831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028314)	promoter-TSS (NM_028314)	-165.0	NM_011899	24067.0	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	284.88	232.24	145.22	249.65	215.53	155.13	368.61	337.82	178.61
Merged-chr19-29210163-3	chr19	29209662	29210662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41641.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	16.02	23.04	20.35	30.36	8.4	17.68	26.4	30.95	13.74
Merged-chr17-78247215-3	chr17	78246708	78247708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	46960.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	53.77	58.52	34.22	50.6	34.52	39.39	42.25	49.96	31.23
Merged-chr17-23980712-3	chr17	23980208	23981208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-5478.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	82.95	58.98	65.67	82.99	54.58	73.14	122.52	125.13	69.32
Merged-chr1-20508111-1	chr1	20507611	20508611	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 34 of 66)	intron (NM_153179, intron 34 of 66)	109946.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	6.86	2.3	3.7	5.4	11.2	4.82	4.22	2.65	5.62
Merged-chr14-58321514-3	chr14	58321002	58322002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	248816.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	79.52	82.48	94.35	90.41	112.9	92.44	108.79	125.13	71.82
Merged-chr17-71259930-2	chr17	71259429	71260429	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	51082.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	36.61	21.2	22.2	53.3	24.26	36.97	5.28	2.21	5.62
Merged-chr14-61971313-3	chr14	61970804	61971804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288931.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	149.31	137.31	107.29	163.96	116.16	106.9	135.19	133.98	84.94
Merged-chr7-111122769-3	chr7	111122264	111123264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-89.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	139.58	149.29	105.44	149.11	132.02	136.64	157.37	154.32	93.68
Merged-chr4-3835641-3	chr4	3835135	3836135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026147)	promoter-TSS (NM_026147)	20.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	116.13	99.07	85.1	85.01	82.57	121.37	107.73	119.39	101.17
Merged-chr1-156986422-3	chr1	156985930	156986930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46804.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	41.76	37.32	22.2	24.29	7.0	9.65	33.8	18.57	28.1
Merged-chr2-167761776-3	chr2	167761255	167762255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70578.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	351.81	349.74	235.86	392.01	334.49	274.09	343.26	393.97	197.35
Merged-chr1-72243948-3	chr1	72243507	72244507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155355)	promoter-TSS (NR_155355)	14.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	205.94	193.07	148.92	178.8	151.62	134.23	246.09	227.27	95.55
Merged-chr7-41633028-3	chr7	41632522	41633522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-509.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	84.66	149.75	109.14	93.11	91.44	110.12	134.14	147.24	85.56
Merged-chr3-122290906-3	chr3	122290406	122291406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2797.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	111.55	117.5	78.62	96.48	80.71	55.46	69.71	71.63	74.32
Merged-chr10-60268973-3	chr10	60268493	60269493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	-8635.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	52.06	56.68	59.2	55.33	49.45	83.59	76.05	70.75	48.09
Merged-chr7-127850307-3	chr7	127849817	127850817	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8509.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	213.95	205.97	162.79	394.71	300.43	284.54	330.59	434.65	171.12
Merged-chr1-82798530-2	chr1	82798029	82799029	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30073.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	37.76	67.74	56.42	81.64	63.45	76.36	82.38	85.34	68.07
Merged-chr10-40141127-3	chr10	40140638	40141638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	1116.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	136.72	171.41	113.77	166.66	173.07	160.76	168.99	244.96	114.29
Merged-chr4-54494981-1	chr4	54494481	54495481	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-452964.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	7.44	5.07	0.0	5.4	3.27	11.25	1.06	4.86	1.25
Merged-chr1-133129383-3	chr1	133128895	133129895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1771.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	231.68	316.56	210.89	238.18	241.65	209.79	246.09	309.96	163.63
Merged-chr18-23884642-3	chr18	23884168	23885168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-70020.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	268.87	268.18	152.62	259.09	177.27	157.54	217.57	274.59	118.66
Merged-chr13-62856412-3	chr13	62855897	62856897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1973.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	8.01	5.53	2.77	3.37	1.4	6.43	7.39	2.65	3.12
Merged-chr9-62341240-3	chr9	62340709	62341709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009672)	promoter-TSS (NM_009672)	-134.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	48.05	27.65	36.07	35.09	27.06	51.44	21.12	26.97	26.85
Merged-chr7-27356087-3	chr7	27355552	27356552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-44.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	203.08	211.04	182.22	120.1	139.95	130.21	204.9	227.27	166.12
Merged-chr3-36572154-3	chr3	36571648	36572648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027810)	TTS (NM_027810)	890.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	50.34	46.08	32.37	64.1	34.06	39.39	72.88	63.67	41.22
Merged-chr1-134747743-3	chr1	134747220	134748220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009307, exon 10 of 10)	3' UTR (NM_009307, exon 10 of 10)	38420.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	14.87	6.45	0.0	9.45	9.8	4.82	6.34	1.33	3.12
Merged-chr2-45231778-3	chr2	45231281	45232281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114339.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	200.79	220.25	135.97	197.02	156.75	158.35	199.62	230.37	108.67
Merged-chr4-15995693-3	chr4	15995191	15996191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145950)	TTS (NM_145950)	18147.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	9.15	6.91	17.57	10.12	7.93	11.25	9.51	14.59	3.75
Merged-chr6-83054591-3	chr6	83054087	83055087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-16.0	NM_019752	64704.0	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	362.11	311.49	213.66	394.71	331.69	232.29	332.7	346.22	138.65
Merged-chr1-172341095-3	chr1	172340567	172341567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039484)	promoter-TSS (NM_001039484)	-143.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	46.34	39.17	91.57	64.77	51.78	102.08	58.09	44.22	35.6
Merged-chrX-74246564-3	chrX	74246078	74247078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010227)	promoter-TSS (NM_010227)	-44.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	60.07	77.87	81.4	78.94	68.11	65.91	50.7	81.36	54.96
Merged-chr2-119029440-3	chr2	119028939	119029939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199310)	promoter-TSS (NM_199310)	-46.0	NM_199310	269336.0	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	66.93	64.05	35.15	44.53	41.99	42.6	60.2	57.92	25.61
Merged-chr2-173018770-3	chr2	173018275	173019275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3127.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.0	6.91	13.87	6.75	5.13	11.25	13.73	4.86	10.62
Merged-chr19-9899582-3	chr19	9899087	9900087	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016692)	promoter-TSS (NM_016692)	-54.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	210.52	222.1	184.99	159.91	204.33	160.76	154.2	179.08	146.76
Merged-chr3-146110587-3	chr3	146110098	146111098	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-2562.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	82.38	69.12	56.42	83.66	66.71	81.18	23.24	22.99	21.23
Merged-chr15-25288046-3	chr15	25287545	25288545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125719.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	93.24	92.16	68.45	130.9	128.76	86.01	108.79	129.55	42.47
Merged-chr10-13300390-3	chr10	13299891	13300891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	23898.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	206.51	240.99	150.77	215.91	213.19	170.4	283.06	331.18	166.12
Merged-chr5-99248717-3	chr5	99248206	99249206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	4221.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	248.27	198.14	131.34	225.36	147.42	137.45	207.01	193.67	152.38
Merged-chr11-20112440-3	chr11	20111935	20112935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	CpG	516.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	169.33	168.19	183.14	138.99	133.42	137.45	173.21	127.79	129.28
Merged-chr19-43631066-3	chr19	43630557	43631557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10950.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	7.44	4.15	5.55	6.75	3.27	1.61	2.11	2.21	1.25
Merged-chr10-81176865-5	chr10	81176373	81177373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007907, intron 1 of 13)	CpG	242.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	315.2	301.81	183.14	305.65	302.3	199.34	235.53	275.91	164.88
Merged-chr15-97581901-3	chr15	97581387	97582387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123935.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	38.9	21.66	12.95	58.03	49.45	33.76	42.25	46.43	13.74
Merged-chr15-9071173-3	chr15	9070671	9071671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-89.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	132.72	111.97	99.89	126.85	81.64	100.47	157.37	102.14	70.57
Merged-chr15-95804395-3	chr15	95803880	95804880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	13537.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	339.23	302.74	157.24	400.78	370.41	279.72	314.74	351.97	125.53
Merged-chr3-95457905-3	chr3	95457334	95458334	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	23444.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	25.17	20.74	36.07	31.71	13.06	33.76	29.57	19.01	29.98
Merged-chr6-113660636-3	chr6	113660156	113661156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	22189.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	349.52	270.02	180.37	366.37	230.46	233.1	295.73	329.86	149.89
Merged-chr15-39944046-3	chr15	39943544	39944544	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172814)	promoter-TSS (NM_172814)	-50.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	191.07	194.91	173.89	272.59	202.0	175.23	182.72	155.64	98.05
Merged-chr8-34147159-3	chr8	34146628	34147628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-389.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	175.62	134.55	163.72	193.64	137.15	134.23	221.8	198.09	109.29
Merged-chr5-123749547-3	chr5	123749042	123750042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042421)	promoter-TSS (NM_001042421)	-128.0	NM_001359865	208606.0	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	92.1	73.26	60.12	95.81	71.38	96.45	100.34	89.32	54.96
Merged-chrX-20704580-3	chrX	20704082	20705082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145628, intron 1 of 20)	intron (NM_145628, intron 1 of 20)	673.0	NM_145628	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	122.99	94.92	126.72	113.35	87.24	69.93	120.41	103.47	75.57
Merged-chr11-21225210-3	chr11	21224688	21225688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13844.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	75.51	90.31	63.82	78.94	64.84	52.25	62.31	78.71	61.2
Merged-chr18-84311919-3	chr18	84311440	84312440	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	223782.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	14.3	24.88	16.65	22.27	14.46	32.96	25.35	18.57	18.11
Merged-chr3-58470236-3	chr3	58469748	58470748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55528.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	21.74	18.43	16.65	30.36	21.46	34.56	36.97	22.99	17.49
Merged-chr7-45717996-3	chr7	45717488	45718488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203280)	promoter-TSS (NM_203280)	14.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	331.22	334.53	242.34	316.44	324.22	250.78	305.24	346.66	155.51
Merged-chr2-168154633-3	chr2	168154125	168155125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040327)	promoter-TSS (NR_040327)	-112.0	NR_040327	77017.0	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	8.58	6.91	9.25	12.82	7.0	8.84	5.28	6.63	6.87
Merged-chr5-16489985-1	chr5	16489485	16490485	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-63510.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.43	3.23	5.55	3.37	9.33	3.22	8.45	5.31	2.5
Merged-chr10-20058285-3	chr10	20057782	20058782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 9 of 29)	intron (NM_008580, intron 9 of 29)	-90638.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	81.23	104.6	45.32	89.06	79.31	84.4	76.05	85.78	39.35
Merged-chr10-9901147-3	chr10	9900630	9901630	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081344)	promoter-TSS (NM_001081344)	-90.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	58.35	38.25	29.6	76.92	43.85	42.6	76.05	25.65	29.35
Merged-chr16-97593251-3	chr16	97592778	97593778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015775, intron 3 of 13)	B3|SINE|B2	17917.0	NM_015775	50528.0	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	8.01	5.07	2.77	0.0	3.27	0.0	3.17	1.33	1.87
Merged-chr10-80264879-3	chr10	80264402	80265402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122605)	promoter-TSS (NM_001122605)	-89.0	NM_001122604	70248.0	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	96.11	70.04	86.95	87.04	51.32	58.68	88.72	74.73	54.33
Merged-chr4-145200320-3	chr4	145199886	145200886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5381.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	77.23	93.08	53.65	109.98	125.02	95.65	78.16	76.49	58.71
Merged-chr9-108340045-3	chr9	108339580	108340580	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001329528, exon 3 of 3)	exon (NM_001329528, exon 3 of 3)	1000.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	326.64	370.01	257.14	294.85	270.11	248.37	308.41	367.88	230.45
Merged-chr9-105131809-3	chr9	105131317	105132317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029385)	promoter-TSS (NM_029385)	-12.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	188.21	218.41	207.19	205.79	163.74	157.54	237.64	194.55	83.69
Merged-chr2-125782791-3	chr2	125782294	125783294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177608)	promoter-TSS (NM_177608)	76.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	145.3	157.13	125.79	148.44	104.5	123.78	155.26	135.3	81.19
Merged-chr5-136244949-3	chr5	136244469	136245469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302939)	promoter-TSS (NM_001302939)	-29.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	72.08	84.78	93.42	134.27	111.03	134.23	156.32	145.47	69.32
Merged-chr11-86581474-3	chr11	86580929	86581929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2729.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	196.79	157.59	95.27	224.68	140.89	135.04	192.23	213.57	103.05
Merged-chr1-54798625-3	chr1	54798122	54799122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	127765.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	29.75	23.04	20.35	33.74	18.19	28.94	11.62	11.05	13.74
Merged-chr19-45176489-1	chr19	45175989	45176989	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25774.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.57	3.23	3.7	0.0	1.4	0.0	17.96	12.38	6.25
Merged-chr16-73769950-3	chr16	73769454	73770454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	572113.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	22.31	48.84	14.8	42.51	48.52	49.03	60.2	53.94	56.83
Merged-chr3-100488463-3	chr3	100487971	100488971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142952, intron 1 of 1)	CpG	721.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	49.77	56.68	30.52	41.83	43.85	20.09	76.05	80.47	50.59
Merged-chr18-74880180-3	chr18	74879666	74880666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	81097.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.43	3.23	3.7	9.45	3.73	3.22	3.17	3.54	6.25
Merged-chr1-88077325-2	chr1	88076820	88077820	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201644, intron 1 of 4)	RLTR17|LTR|ERVK	6541.0	NM_201644	394434.0	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	6.86	5.99	1.85	9.45	5.13	9.65	3.17	4.42	8.12
Merged-chr6-29540510-3	chr6	29540009	29541009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347079)	TTS (NM_001347079)	11227.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	57.78	64.97	44.4	80.97	51.32	64.3	62.31	90.64	34.35
Merged-chr16-38403827-3	chr16	38403336	38404336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134102, intron 8 of 10)	intron (NM_134102, intron 8 of 10)	29309.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	18.31	11.52	12.95	26.31	18.19	16.08	11.62	14.15	12.49
Merged-chr11-121743792-3	chr11	121743298	121744298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41371.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	290.03	292.6	183.14	315.09	238.39	246.76	256.65	291.39	175.49
Merged-chr17-47511258-3	chr17	47510755	47511755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6204.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	90.96	73.73	57.35	81.64	72.31	61.89	70.76	71.19	52.46
Merged-chr1-53297077-3	chr1	53296567	53297567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153556)	promoter-TSS (NM_153556)	-28.0	NM_145517	227102.0	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	60.07	64.97	62.9	73.54	100.3	67.52	69.71	65.44	45.59
Merged-chr13-58115430-3	chr13	58114927	58115927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1780.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	11.44	9.68	1.85	7.42	7.46	4.82	7.39	4.86	11.24
Merged-chr3-14641636-3	chr3	14641154	14642154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024495)	promoter-TSS (NM_024495)	-73.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	161.32	134.55	76.77	236.83	176.81	159.95	145.75	98.16	43.72
Merged-chr10-128131499-3	chr10	128130968	128131968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019711, exon 13 of 13)	3' UTR (NM_019711, exon 13 of 13)	38685.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	45.76	38.25	39.77	49.25	35.45	33.76	49.64	45.1	37.47
Merged-chr3-142394936-3	chr3	142394451	142395451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	745.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	249.42	264.95	183.14	255.72	179.61	187.28	215.46	180.4	154.88
Merged-chr11-32533205-3	chr11	32532690	32533690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359177)	promoter-TSS (NM_001359177)	-76.0	NM_001359178	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	97.82	83.86	78.62	142.37	155.81	133.43	158.43	108.77	52.46
Merged-chr2-160621562-4	chr2	160620999	160621999	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24398.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	158.46	189.38	149.84	163.28	142.75	204.97	126.74	120.71	123.03
Merged-chr17-45574330-3	chr17	45573850	45574850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	211.09	204.13	177.59	175.43	136.22	164.78	138.36	180.85	114.91
Merged-chr1-59914080-3	chr1	59913566	59914566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037725, intron 1 of 7)	intron (NM_001037725, intron 1 of 7)	1060.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	346.09	317.48	364.43	297.55	271.97	213.81	326.36	322.34	226.7
Merged-chr4-40844352-3	chr4	40843841	40844841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	5797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	197.93	197.68	147.07	194.32	135.75	127.8	147.87	179.52	80.56
Merged-chr15-100227773-3	chr15	100227284	100228284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-75.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	334.65	347.89	287.66	290.13	322.82	228.28	318.97	332.07	170.5
Merged-chr16-49855482-3	chr16	49854985	49855985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010581)	promoter-TSS (NM_010581)	-169.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	355.82	311.49	262.69	369.75	289.7	344.83	308.41	299.35	171.75
Merged-chr13-64375886-3	chr13	64375396	64376396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5376.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	31.46	33.64	11.1	25.64	17.73	7.23	23.24	12.38	8.74
Merged-chr5-24530230-3	chr5	24529732	24530732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	2.86	3.69	5.55	3.37	3.27	0.0	7.39	4.42	5.0
Merged-chr9-95699406-3	chr9	95698894	95699894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	50964.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	16.59	14.75	11.1	16.87	12.6	13.66	17.96	18.57	19.36
Merged-chr8-47673631-3	chr8	47673133	47674133	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	1526.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	338.66	231.31	180.37	315.77	185.67	178.44	287.28	206.93	152.38
Merged-chr19-10388854-3	chr19	10388417	10389417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-173.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	2.86	3.69	5.55	10.12	0.93	0.0	8.45	1.33	6.25
Merged-chr14-61682998-1	chr14	61682498	61683498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028264)	promoter-TSS (NR_028264)	-625.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	434.19	415.17	305.23	400.11	334.49	290.97	345.37	367.0	213.59
Merged-chr7-99052594-3	chr7	99052100	99053100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	L2a|LINE|L2	88544.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	184.2	188.46	111.92	215.91	114.76	105.3	140.47	134.86	73.69
Merged-chr14-55781416-3	chr14	55780862	55781862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 4 of 25)	intron (NM_080435, intron 4 of 25)	2710.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	12.59	8.29	0.0	12.14	7.46	12.86	12.67	8.84	5.0
Merged-chr9-36797358-3	chr9	36796859	36797859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199494)	promoter-TSS (NM_001199494)	34.0	NM_001199494	13663.0	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	37.18	26.26	35.15	37.11	31.26	28.94	21.12	17.24	26.85
Merged-chr10-21976530-3	chr10	21976035	21977035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 3 of 13)	intron (NM_001161845, intron 3 of 13)	-2137.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	34.32	32.72	21.27	64.1	40.59	55.46	51.75	36.7	31.23
Merged-chr6-65528082-3	chr6	65527583	65528583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-62315.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	16.02	26.73	16.65	25.64	16.33	26.53	19.01	25.65	12.49
Merged-chr18-49500961-2	chr18	49500469	49501469	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22320.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	5.72	0.92	3.7	4.72	2.8	3.22	0.0	1.33	7.49
Merged-chr1-152625061-4	chr1	152624498	152625498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016846, exon 1 of 18)	exon (NM_016846, exon 1 of 18)	219.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	203.65	172.33	148.92	225.36	176.81	184.87	155.26	181.73	115.54
Merged-chr8-57488631-3	chr8	57488129	57489129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021788)	promoter-TSS (NM_021788)	666.0	NR_126555	78353.0	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	145.87	100.45	56.42	153.84	125.49	93.24	107.73	104.35	54.96
Merged-chr13-50417890-3	chr13	50417392	50418392	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175401)	promoter-TSS (NM_175401)	28.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	41.76	34.56	59.2	51.95	46.65	57.87	76.05	72.96	36.22
Merged-chr1-131090378-3	chr1	131089890	131090890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	7453.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	102.97	93.54	70.3	179.47	123.16	73.95	129.91	107.89	60.58
Merged-chr3-65527809-1	chr3	65527309	65528309	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178892)	promoter-TSS (NM_178892)	-638.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	237.97	180.17	182.22	216.58	211.79	204.97	229.19	206.05	133.65
Merged-chr8-94214504-3	chr8	94214004	94215004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	-60.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	101.25	87.55	56.42	126.17	86.3	107.71	96.11	89.32	63.7
Merged-chr15-66729116-3	chr15	66728607	66729607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 26 of 47)	intron (NM_009375, intron 26 of 47)	58337.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	76.66	79.72	57.35	85.01	54.11	97.26	83.44	74.73	41.22
Merged-chr7-104314906-1	chr7	104314406	104315406	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040749)	promoter-TSS (NR_040749)	-125.0	NR_040749	622070.0	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	-	predicted gene 15133	ncRNA	0.57	0.0	0.0	0.67	0.0	0.0	293.62	465.16	192.98
Merged-chr19-10605453-3	chr19	10604949	10605949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015735)	promoter-TSS (NM_015735)	-176.0	NM_015735	13194.0	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	182.49	198.14	149.84	215.23	231.39	147.09	183.78	214.45	95.55
Merged-chr7-35066837-3	chr7	35066336	35067336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10270.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	128.14	103.22	50.87	110.65	69.04	64.3	49.64	55.71	46.84
Merged-chr12-8500074-3	chr12	8499564	8500564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007483)	promoter-TSS (NM_007483)	-55.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	286.6	210.58	177.59	225.36	225.79	197.73	243.98	221.08	133.65
Merged-chr4-152027720-3	chr4	152027205	152028205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133879)	promoter-TSS (NM_133879)	-34.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	92.67	96.3	121.17	93.79	74.64	90.83	99.28	95.51	88.68
Merged-chr2-75585144-3	chr2	75584659	75585659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74100.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	11.44	7.37	5.55	8.1	7.93	4.02	7.39	7.52	5.62
Merged-chrY-1010441-4	chrY	1009965	1010965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012011)	promoter-TSS (NM_012011)	-130.0	NM_001357094	26908.0	Mm.250909	NM_012011	ENSMUSG00000069049	Eif2s3y	Eif-2gy|Spy|Tfy	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	protein-coding	110.98	123.95	40.7	98.51	82.57	55.46	127.8	140.17	60.58
Merged-chr6-16892098-3	chr6	16891610	16892610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	6331.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	197.93	280.16	144.29	196.34	204.8	88.42	139.42	178.64	113.04
Merged-chr4-131855189-3	chr4	131854695	131855695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025297, intron 3 of 9)	intron (NM_025297, intron 3 of 9)	11724.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	41.19	34.56	18.5	33.06	15.86	25.72	13.73	18.13	34.35
Merged-chr3-98055958-3	chr3	98055448	98056448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	42410.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	38.9	50.23	56.42	62.07	36.39	44.21	31.69	31.39	19.36
Merged-chr8-125776996-3	chr8	125776515	125777515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	42812.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	15.45	12.9	13.87	37.78	40.59	43.4	27.46	23.43	33.72
Merged-chr19-32950422-3	chr19	32949900	32950900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	192823.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	55.49	88.01	66.6	49.25	58.31	65.91	80.27	65.0	66.82
Merged-chr19-5850005-3	chr19	5849504	5850504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026169)	TTS (NM_026169)	-4524.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	382.7	308.73	135.97	324.54	277.11	209.79	266.16	302.88	99.92
Merged-chr12-84773094-3	chr12	84772589	84773589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	23.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	194.5	184.31	150.77	186.22	174.94	130.21	204.9	211.36	112.42
Merged-chr5-16356049-3	chr5	16355555	16356555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 29 of 38)	intron (NM_001110843, intron 29 of 38)	-197440.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	17.16	17.97	5.55	14.84	11.2	10.45	11.62	9.73	11.24
Merged-chr4-63553947-3	chr4	63553445	63554445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4818.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	44.05	58.98	28.67	43.86	44.32	48.23	59.15	63.23	41.84
Merged-chr10-54117972-3	chr10	54117477	54118477	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42055.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	197.93	135.01	75.85	165.31	91.9	94.04	108.79	101.7	85.56
Merged-chr8-85060106-3	chr8	85059605	85060605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026791)	promoter-TSS (NM_026791)	-14.0	NM_026791	68628.0	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	26.89	27.19	20.35	31.04	30.79	32.96	11.62	14.15	18.74
Merged-chr14-21852391-1	chr14	21851891	21852891	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-3481.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	6.29	2.76	7.4	5.4	4.2	12.86	11.62	2.65	3.75
Merged-chr7-35735455-2	chr7	35734955	35735955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	18999.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	100.11	96.76	77.7	91.09	88.17	104.49	2.11	3.54	1.25
Merged-chr11-119354994-3	chr11	119354486	119355486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178743)	promoter-TSS (NM_178743)	524.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	172.19	168.19	120.24	203.09	201.53	118.16	188.0	213.12	103.05
Merged-chr7-38107645-3	chr7	38107141	38108141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-151.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	180.2	132.25	142.44	148.44	147.42	123.78	199.62	141.05	80.56
Merged-chr4-133584368-3	chr4	133583869	133584869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133884)	promoter-TSS (NM_133884)	-4.0	NM_001290742	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	116.13	116.12	86.02	122.12	118.03	118.96	114.07	115.85	57.46
Merged-chr9-118599935-3	chr9	118599420	118600420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-6789.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	16.59	9.22	11.1	22.27	9.8	8.84	9.51	4.42	16.24
Merged-chr6-97205716-3	chr6	97205210	97206210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301857)	promoter-TSS (NM_001301857)	-63.0	NM_001301859	22200.0	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	24.6	14.75	19.42	30.36	19.13	22.51	27.46	19.01	22.48
Merged-chr4-4793313-3	chr4	4792803	4793803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177730)	promoter-TSS (NM_177730)	3.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	141.87	113.35	104.52	118.08	116.63	98.06	135.19	73.84	74.94
Merged-chr4-154929563-3	chr4	154929051	154930051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1474.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	259.14	223.48	123.02	257.74	175.87	172.01	233.42	275.47	147.39
Merged-chr1-186749352-3	chr1	186748854	186749854	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026041)	promoter-TSS (NM_026041)	4.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	74.94	67.27	40.7	93.79	58.31	71.54	81.33	70.3	44.34
Merged-chr7-104370312-3	chr7	104369805	104370805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11659.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	112.12	124.41	100.82	108.63	105.43	97.26	97.17	118.5	84.94
Merged-chr13-103921066-3	chr13	103920570	103921570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289474)	promoter-TSS (NM_001289474)	-484.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	383.85	200.9	205.34	378.52	163.28	179.24	325.31	100.81	135.52
Merged-chr14-66264916-3	chr14	66264520	66265520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	16032.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	103.54	130.4	137.82	93.79	58.78	81.18	84.49	91.97	89.93
Merged-chr9-78108599-3	chr9	78108092	78109092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023605)	promoter-TSS (NM_023605)	64.0	NM_023605	71538.0	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	155.6	176.48	157.24	182.17	158.61	167.99	168.99	183.06	109.29
Merged-chr13-45265002-3	chr13	45264507	45265507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124735.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	22.31	28.11	22.2	41.16	35.45	42.6	17.96	8.84	14.36
Merged-chr10-117720057-3	chr10	117719568	117720568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9310.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	96.11	74.19	49.95	74.89	54.11	61.89	103.51	106.12	40.59
Merged-chr17-7897334-3	chr17	7896731	7897731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28769.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	50.34	45.16	29.6	55.33	35.92	28.13	48.58	53.06	27.48
Merged-chr7-97765399-3	chr7	97764929	97765929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23112.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	44.62	26.73	54.57	47.23	38.25	32.96	39.08	37.58	26.23
Merged-chr2-117852632-3	chr2	117852136	117853136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30708.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	41.76	34.1	23.12	34.41	20.99	47.42	57.03	65.0	29.98
Merged-chr10-95192132-3	chr10	95191626	95192626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-46301.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	50.34	50.69	49.95	56.68	47.12	64.3	53.87	57.92	52.46
Merged-chr4-21848241-5	chr4	21847716	21848716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028384, exon 1 of 1)	non-coding (NR_028384, exon 1 of 1)	232.0	NR_028384	67735.0	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	490.25	622.98	371.83	404.83	564.94	400.29	464.72	497.44	283.54
Merged-chr15-81466666-3	chr15	81466143	81467143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019712, intron 1 of 4)	CpG	327.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	85.24	82.94	104.52	134.27	79.77	94.04	115.12	100.37	67.45
Merged-chr5-5420177-3	chr5	5419681	5420681	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-39930.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	267.72	358.49	171.12	273.94	288.3	208.18	295.73	365.23	191.73
Merged-chr4-11966579-3	chr4	11966076	11967076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040577)	promoter-TSS (NR_040577)	2.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	62.93	45.62	55.5	70.17	71.38	65.11	74.99	52.18	64.33
Merged-chr15-96594102-3	chr15	96593610	96594610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	47852.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	80.66	75.57	73.07	41.83	18.19	14.47	47.53	41.56	20.61
Merged-chr8-94012222-3	chr8	94011726	94012726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011787, exon 1 of 14)	exon (NM_011787, exon 1 of 14)	414.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	237.97	183.85	184.07	172.73	147.88	171.21	188.0	122.48	119.28
Merged-chr6-83795091-3	chr6	83794571	83795571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019542)	promoter-TSS (NM_019542)	14.0	NM_019542	56174.0	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	237.97	217.49	207.19	282.71	235.59	290.97	253.48	272.37	141.77
Merged-chr6-86401262-3	chr6	86400760	86401760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2959.0	NM_001164079	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	58.92	60.36	65.67	95.14	51.78	69.13	74.99	70.3	29.98
Merged-chr13-35941150-3	chr13	35940650	35941650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26756.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	26.89	45.62	57.35	22.94	22.86	26.53	19.01	19.46	8.74
Merged-chr7-19628731-3	chr7	19628252	19629252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290457, intron 1 of 10)	intron (NM_001290457, intron 1 of 10)	686.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	336.94	263.57	201.64	259.77	217.86	241.94	210.18	217.55	143.64
Merged-chr10-57722566-3	chr10	57722078	57723078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-62345.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	105.83	143.76	40.7	109.98	93.77	81.99	119.35	138.4	74.94
Merged-chr3-127763270-3	chr3	127762783	127763783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	17244.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	53.77	26.73	15.72	57.35	23.33	36.17	42.25	21.67	22.48
Merged-chr17-29394294-3	chr17	29393784	29394784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33370.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	379.84	291.68	144.29	255.72	132.95	93.24	220.74	251.59	87.43
Merged-chr7-89980525-3	chr7	89980025	89981025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021876, exon 1 of 12)	exon (NM_021876, exon 1 of 12)	451.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	287.17	305.5	243.26	272.59	226.72	239.53	272.5	328.09	198.6
Merged-chr5-122704712-3	chr5	122704193	122705193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2851.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	68.65	62.21	43.47	72.19	45.25	32.15	83.44	59.69	33.1
Merged-chr17-65763718-1	chr17	65763218	65764218	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	B2_Mm1a|SINE|B2	9034.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	1.14	0.92	5.55	2.7	2.8	3.22	49.64	58.37	28.1
Merged-chr13-5785657-3	chr13	5785147	5786147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR40a|LTR|ERVL	72445.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	17.73	11.98	14.8	20.24	16.79	11.25	26.4	11.94	11.87
Merged-chr9-96392123-3	chr9	96391639	96392639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27708.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	180.2	162.66	117.47	201.74	122.69	153.52	218.63	258.67	124.91
Merged-chr7-19715703-3	chr7	19715186	19716186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016871)	promoter-TSS (NM_016871)	-257.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	149.31	105.06	103.59	156.53	84.9	90.83	100.34	81.8	72.45
Merged-chr13-80962991-3	chr13	80962502	80963502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	44.62	36.86	21.27	95.81	65.78	61.89	61.26	45.99	34.97
Merged-chr8-70897516-3	chr8	70897014	70898014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-71.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	152.17	193.53	169.27	119.43	150.22	130.21	126.74	160.95	131.15
Merged-chr10-122774342-3	chr10	122773845	122774845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	95030.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	67.5	61.75	61.97	43.86	40.59	34.56	59.15	65.88	44.34
Merged-chr17-53479836-1	chr17	53479336	53480336	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025887, intron 1 of 5)	CpG	602.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	431.33	410.1	357.03	329.94	369.47	281.33	349.6	309.52	231.7
Merged-chr9-121704917-3	chr9	121704389	121705389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178677, intron 1 of 7)	CpG	140.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	190.49	193.53	144.29	190.27	190.8	154.33	153.15	143.26	94.3
Merged-chr7-19496392-3	chr7	19495904	19496904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11927.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	40.04	33.64	44.4	37.78	20.53	43.4	44.36	38.03	36.85
Merged-chr19-6046973-3	chr19	6046478	6047478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164709)	promoter-TSS (NM_001164709)	-167.0	NM_001164709	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	466.8	393.51	295.99	365.7	340.55	289.36	345.37	386.45	217.96
Merged-chr1-164135491-3	chr1	164134996	164135996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-16339.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	10.3	2.76	9.25	13.49	8.86	11.25	9.51	8.84	4.37
Merged-chr9-7572809-3	chr9	7572304	7573304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 2 of 9)	B3|SINE|B2	1408.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	115.55	107.36	88.8	172.73	121.76	122.18	213.35	207.38	101.17
Merged-chr10-128374591-1	chr10	128374091	128375091	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2533.0	NM_172790	237615.0	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	41.76	28.11	30.52	21.59	22.86	43.4	46.47	44.66	28.73
Merged-chr2-167015305-3	chr2	167014814	167015814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	1.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	143.59	118.42	105.44	100.53	105.9	110.92	145.75	133.53	85.56
Merged-chr7-64011965-3	chr7	64011466	64012466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73051.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	39.47	24.42	22.2	50.6	41.52	33.76	36.97	21.22	19.36
Merged-chr2-125673095-3	chr2	125672619	125673619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025613)	promoter-TSS (NM_025613)	19.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	31.46	14.28	25.9	82.99	41.99	20.09	33.8	19.01	18.11
Merged-chr2-30286405-3	chr2	30285893	30286893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177648)	promoter-TSS (NM_177648)	-39.0	NM_177648	227697.0	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	44.62	29.95	25.9	43.86	47.58	58.68	62.31	38.91	19.98
Merged-chr11-75178864-3	chr11	75178335	75179335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027136)	promoter-TSS (NM_027136)	-27.0	NM_027136	246257.0	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	61.21	58.52	56.42	64.77	79.31	81.99	67.6	64.56	65.58
Merged-chr5-92506319-3	chr5	92505811	92506811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007644)	promoter-TSS (NM_007644)	-654.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	227.11	226.71	150.77	203.76	183.34	211.4	208.07	263.97	136.77
Merged-chr17-55952622-3	chr17	55952117	55953117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015766)	promoter-TSS (NM_015766)	-6.0	NM_015766	50498.0	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	94.96	98.15	66.6	88.39	64.38	49.03	62.31	91.09	54.33
Merged-chr15-81663894-3	chr15	81663380	81664380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110362)	promoter-TSS (NR_110362)	-9.0	NM_001289712	214669.0	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	L3MBTL2 polycomb repressive complex 1 subunit	protein-coding	47.48	40.55	34.22	56.0	55.98	40.19	50.7	65.0	29.35
Merged-chr10-95817587-3	chr10	95817083	95818083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-123080.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	36.61	34.56	23.12	51.28	36.39	67.52	40.14	34.05	29.98
Merged-chr9-65551190-3	chr9	65550703	65551703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28884.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	239.12	201.36	225.69	250.32	189.4	194.52	122.52	129.55	78.69
Merged-chr3-142619828-3	chr3	142619333	142620333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-830.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	228.25	335.91	208.11	195.67	179.14	178.44	149.98	190.13	126.78
Merged-chr4-136894849-3	chr4	136894322	136895322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1908.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	115.55	80.64	98.05	148.44	95.17	152.72	78.16	68.54	43.09
Merged-chr7-44895943-5	chr7	44895433	44896433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027376)	promoter-TSS (NM_027376)	-146.0	NM_027376	70300.0	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	129.28	84.78	71.22	101.88	41.52	64.3	73.93	60.13	36.22
Merged-chr1-172550722-3	chr1	172550218	172551218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040558)	promoter-TSS (NR_040558)	88.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	22.31	26.26	29.6	24.96	16.33	23.31	47.53	47.31	25.61
Merged-chr7-46717172-3	chr7	46716664	46717664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1488.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	10.3	9.22	0.0	8.77	3.73	8.04	10.56	4.42	1.87
Merged-chr11-3157665-2	chr11	3157150	3158150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 11 of 32)	intron (NM_030207, intron 11 of 32)	33629.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	168.76	287.07	173.89	292.83	315.83	417.97	10.56	11.05	304.77
Merged-chr2-101783445-3	chr2	101782948	101783948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	14259.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	58.92	75.11	36.07	76.92	74.64	80.38	94.0	118.5	62.45
Merged-chr8-94443428-3	chr8	94442931	94443931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8328.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	11.44	18.43	18.5	10.8	11.2	10.45	26.4	14.59	3.75
Merged-chr3-83841164-2	chr3	83840649	83841649	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011905, intron 1 of 2)	intron (NM_011905, intron 1 of 2)	459.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	296.32	299.05	213.66	358.95	250.52	225.86	282.0	382.92	161.13
Merged-chrX-7204311-3	chrX	7203802	7204802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 3 of 13)	MTC|LTR|ERVL-MaLR	-15588.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	20.02	28.57	15.72	23.62	12.13	25.72	20.07	13.71	13.74
Merged-chr13-67173191-3	chr13	67172706	67173706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013769)	promoter-TSS (NM_001013769)	24.0	NM_001013769	380855.0	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	80.09	89.39	56.42	74.22	67.64	83.59	115.12	100.37	51.84
Merged-chr2-172393624-3	chr2	172393136	172394136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276423)	promoter-TSS (NM_001276423)	-158.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	39.47	25.34	11.1	29.01	23.79	47.42	17.96	26.97	9.99
Merged-chr15-96641627-3	chr15	96641124	96642124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134086, exon 1 of 16)	5' UTR (NM_134086, exon 1 of 16)	338.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	417.6	423.92	220.14	379.87	410.53	270.07	312.63	326.76	146.14
Merged-chr16-94313450-3	chr16	94312938	94313938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139145, intron 1 of 10)	CpG	125.0	NM_139145	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	490.25	499.95	275.64	453.41	423.12	220.24	425.64	413.87	171.75
Merged-chr10-40302262-3	chr10	40301757	40302757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007444)	promoter-TSS (NM_007444)	-69.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	107.55	89.85	85.1	101.88	80.71	74.75	98.23	109.22	58.08
Merged-chr1-172566435-1	chr1	172565935	172566935	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	6529.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.57	1.84	1.85	2.7	4.2	1.61	20.07	22.11	22.48
Merged-chr2-102968498-3	chr2	102968002	102969002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66837.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	189.92	185.7	112.84	229.4	164.21	133.43	163.71	173.77	91.81
Merged-chr17-44664087-2	chr17	44663582	44664582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	72094.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	7.44	2.3	9.25	10.8	5.6	7.23	3.17	4.42	3.75
Merged-chr8-88298161-3	chr8	88297669	88298669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037724, intron 3 of 27)	intron (NM_001037724, intron 3 of 27)	3965.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	37.18	37.32	48.1	49.25	34.52	45.82	47.53	43.77	44.34
Merged-chr6-113308515-3	chr6	113308018	113309018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282128, intron 1 of 13)	intron (NM_001282128, intron 1 of 13)	1381.0	NM_001282126	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	97.82	123.03	81.4	104.58	103.1	115.75	91.89	127.79	100.55
Merged-chr8-3516756-3	chr8	3516167	3517167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359123)	promoter-TSS (NM_001359123)	-196.0	NM_001359124	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	30.89	21.66	38.85	21.59	20.99	28.13	26.4	24.32	23.11
Merged-chr8-22166365-3	chr8	22165899	22166899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	36.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	48.62	32.25	24.97	46.56	31.72	42.6	49.64	23.43	17.49
Merged-chr2-34977366-3	chr2	34976868	34977868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15596.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	28.03	16.13	7.4	28.34	27.99	38.58	13.73	14.59	22.48
Merged-chr4-57955663-3	chr4	57955168	57956168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	CpG	743.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	251.7	282.46	186.84	237.5	197.8	198.54	325.31	351.52	186.73
Merged-chr1-163779589-3	chr1	163779090	163780090	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010629)	promoter-TSS (NM_010629)	7.0	NM_010629	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	24.6	11.06	16.65	22.94	10.73	11.25	11.62	13.71	5.0
Merged-chrM-11333-2	chrM	10825	11825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											218.52	209.66	24.05	121.45	47.58	35.37	98.23	30.51	31.23
Merged-chr11-11573866-3	chr11	11573367	11574367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53971.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	9.15	7.37	13.87	8.1	7.0	8.04	4.22	4.86	9.37
Merged-chr2-178506234-3	chr2	178505721	178506721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75706.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	9.72	15.21	2.77	15.52	13.53	16.08	6.34	5.31	6.25
Merged-chr2-150842296-3	chr2	150841731	150842731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	339.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	127.0	155.75	113.77	170.7	180.07	130.21	174.27	206.49	77.44
Merged-chr13-32338730-3	chr13	32338229	32339229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146041)	promoter-TSS (NM_146041)	-185.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	88.1	90.77	101.74	76.24	87.24	89.22	103.51	115.41	47.46
Merged-chr17-32965786-3	chr17	32965239	32966239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	-23.0	NR_033585	77875.0	Mm.245027	NR_033585		Cyp4f41-ps	6030422M01Rik	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene	pseudo	85.24	93.54	72.15	127.52	166.08	132.63	184.83	198.09	74.94
Merged-chr5-32133729-3	chr5	32133217	32134217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2755.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	56.06	35.48	39.77	51.95	36.39	116.55	49.64	48.64	52.46
Merged-chr8-122281969-3	chr8	122281465	122282465	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009569)	promoter-TSS (NM_009569)	-176.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	38.9	20.74	39.77	29.01	20.99	19.29	87.66	42.45	27.48
Merged-chr4-59331890-3	chr4	59331372	59332372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	71821.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	102.4	84.78	82.32	135.62	131.56	97.26	54.92	50.85	23.11
Merged-chr7-16399638-2	chr7	16399142	16400142	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1554.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	303.19	350.66	269.16	312.39	279.91	299.81	320.02	404.14	197.35
Merged-chr15-53141195-3	chr15	53140703	53141703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	204980.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	41.76	29.03	12.95	50.6	22.86	12.86	21.12	21.22	9.99
Merged-chr10-21992569-3	chr10	21992082	21993082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161849, intron 1 of 11)	intron (NM_001161849, intron 1 of 11)	359.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	184.2	201.36	182.22	269.21	184.74	259.62	287.28	296.25	124.91
Merged-chr5-136986917-3	chr5	136986423	136987423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011962)	promoter-TSS (NM_011962)	-19.0	NM_001310748	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	204.8	201.36	181.29	217.93	169.34	158.35	186.94	208.26	111.17
Merged-chr7-143549130-4	chr7	143548608	143549608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008672)	promoter-TSS (NM_008672)	12.0	NM_001285489	17955.0	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	332.94	363.56	323.73	329.26	309.3	299.01	373.89	320.13	163.0
Merged-chr4-59225105-1	chr4	59224605	59225605	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34946.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	13.73	15.21	16.65	16.87	20.53	18.49	20.07	18.13	17.49
Merged-chr11-97041509-3	chr11	97041019	97042019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357808)	promoter-TSS (NM_001357808)	-41.0	NM_001357807	107732.0	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	72.65	63.59	49.95	53.98	49.45	41.8	85.55	51.29	61.2
Merged-chr3-37729348-3	chr3	37728863	37729863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5003.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	72.08	67.74	55.5	18.22	24.26	21.7	8.45	11.5	9.37
Merged-chr9-108783747-3	chr9	108783245	108784245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12249.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	84.66	58.98	46.25	102.56	53.65	65.11	83.44	59.69	38.1
Merged-chr19-29522215-3	chr19	29521719	29522719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	-63.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	443.91	375.54	318.18	400.11	309.76	327.14	362.27	336.05	211.71
Merged-chr8-120489445-3	chr8	120488897	120489897	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	CpG-14576	531.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	98.39	101.83	98.05	95.81	98.9	95.65	118.29	114.52	68.07
Merged-chr2-84524195-3	chr2	84523693	84524693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17320.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	137.29	105.06	72.15	120.77	77.91	61.09	115.12	137.96	63.7
Merged-chr6-5509967-3	chr6	5509481	5510481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13703.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	100.68	114.74	110.99	112.68	166.08	162.37	47.53	58.37	71.82
Merged-chr7-143628086-3	chr7	143627567	143628567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	-3.0	NR_153818	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	74.37	82.02	69.37	66.8	73.24	68.32	94.0	102.58	64.95
Merged-chr17-35174664-3	chr17	35174153	35175153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019467, intron 1 of 7)	MER21C|LTR|ERVL	1399.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	107.55	96.3	87.87	70.17	38.25	72.34	79.21	113.19	93.05
Merged-chr4-119415562-3	chr4	119415057	119416057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001270435)	promoter-TSS (NM_001270435)	-36.0	NM_029286	73332.0	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	4.58	1.84	9.25	4.72	3.27	3.22	2.11	0.44	5.0
Merged-chr15-51735283-1	chr15	51734783	51735783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	130178.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	47.48	42.39	35.15	10.12	6.06	8.04	4.22	7.07	7.49
Merged-chr4-126819475-3	chr4	126818985	126819985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 5 of 23)	intron (NM_001035525, intron 5 of 23)	65715.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	84.66	99.99	46.25	71.52	62.51	78.77	63.37	80.47	63.7
Merged-chr12-83928061-3	chr12	83927560	83928560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6126.0	NR_073564	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	57.78	70.5	43.47	64.77	38.25	57.87	62.31	85.34	39.35
Merged-chr15-30608252-3	chr15	30607730	30608730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-430896.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	17.16	24.88	12.02	34.41	22.86	32.96	24.29	25.65	7.49
Merged-chr1-151285299-3	chr1	151284796	151285796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59190.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	17.73	10.14	8.32	17.54	10.73	20.9	11.62	5.31	6.25
Merged-chr9-83682143-1	chr9	83681643	83682643	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9332.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	4.0	1.84	4.62	2.7	0.93	8.04	3.17	2.21	1.87
Merged-chr11-115708674-3	chr11	115708174	115709174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-77.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	269.44	111.97	184.07	246.95	107.76	146.29	231.3	140.17	129.9
Merged-chr18-39489950-3	chr18	39489451	39490451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2706.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	299.76	249.75	331.13	277.98	221.13	275.7	296.79	204.72	184.24
Merged-chr9-106222530-3	chr9	106222031	106223031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031178)	promoter-TSS (NM_031178)	-67.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	171.04	131.78	101.74	143.71	89.57	54.66	159.48	112.31	70.57
Merged-chr3-88422551-3	chr3	88422046	88423046	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	2595.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	42.9	32.25	36.07	24.29	16.79	24.11	26.4	40.68	22.48
Merged-chr1-39916315-3	chr1	39915820	39916820	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	ORR1B2-int|LTR|ERVL-MaLR	15407.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	34.32	38.25	33.3	34.41	21.93	36.97	52.81	39.8	36.22
Merged-chr2-91412502-3	chr2	91411989	91412989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 2 of 8)	intron (NM_175123, intron 2 of 8)	32225.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	46.91	44.7	48.1	51.95	42.45	43.4	50.7	45.54	24.98
Merged-chr2-30178509-3	chr2	30178012	30179012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-53.0	NM_172660	227695.0	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	33.18	18.89	24.97	29.01	19.59	36.17	35.91	25.65	11.24
Merged-chr5-105731705-3	chr5	105731135	105732135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	30825.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	123.56	82.94	22.2	142.37	89.1	35.37	68.65	50.41	8.74
Merged-chr19-34234115-3	chr19	34233611	34234611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360716, exon 6 of 11)	exon (NM_001360716, exon 6 of 11)	1486.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.01	10.6	7.4	6.75	7.93	12.86	21.12	8.84	7.49
Merged-chr15-64306324-2	chr15	64305833	64306833	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	6340.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.72	6.91	5.55	18.22	16.79	18.49	29.57	27.41	18.11
Merged-chr19-28011632-3	chr19	28011138	28012138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011265)	promoter-TSS (NM_011265)	-472.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	97.82	90.31	73.07	105.26	99.83	135.04	111.96	78.26	76.82
Merged-chr14-63178054-3	chr14	63177560	63178560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360211)	promoter-TSS (NM_001360211)	-173.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	44.62	38.71	44.4	31.71	51.78	55.46	59.15	45.99	53.71
Merged-chr8-72548402-3	chr8	72547899	72548899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027485)	promoter-TSS (NM_027485)	-89.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	122.99	135.01	115.62	105.93	134.82	105.3	128.85	124.25	89.31
Merged-chr7-132804187-3	chr7	132803687	132804687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9009.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	63.5	68.2	62.9	72.87	92.37	55.46	57.03	58.37	28.73
Merged-chr1-34464785-3	chr1	34464283	34465283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	L1MB8|LINE|L1	5037.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	188.21	198.6	135.97	205.79	101.23	162.37	200.68	237.0	161.13
Merged-chr4-45799056-3	chr4	45798557	45799557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028270)	promoter-TSS (NM_028270)	35.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	16.59	24.88	12.95	12.82	11.2	8.04	22.18	14.59	22.48
Merged-chrX-164980483-3	chrX	164979962	164980962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290524)	promoter-TSS (NM_001290524)	-87.0	NM_001290524	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	111.55	135.93	82.32	155.19	119.43	109.32	123.57	158.74	79.94
Merged-chrUn_JH584304-2690-1	chrUn_JH584304	2190	3190	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	56999.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	58.09	32.72	0.0
Merged-chr16-15956607-3	chr16	15956122	15957122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	69336.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	32.04	34.56	15.72	29.01	25.19	23.31	31.69	37.58	17.49
Merged-chr14-27376271-3	chr14	27375778	27376778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	14889.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	267.72	346.97	151.69	253.69	283.64	171.21	283.06	392.2	139.89
Merged-chr18-36713567-3	chr18	36713057	36714057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13258.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	56.63	56.22	12.02	71.52	55.98	57.07	20.07	19.46	27.48
Merged-chr12-119157904-3	chr12	119157410	119158410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80366.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	61.78	50.69	12.95	49.25	46.18	28.13	76.05	92.86	45.59
Merged-chr4-97773364-3	chr4	97772855	97773855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4271.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	61.21	68.66	30.52	61.4	41.52	42.6	81.33	103.47	49.34
Merged-chr14-32084949-3	chr14	32084453	32085453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145460)	promoter-TSS (NM_145460)	333.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	193.93	213.34	161.87	180.82	187.54	145.49	203.84	271.49	91.81
Merged-chr6-16883713-3	chr6	16883212	16884212	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	14729.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	100.11	119.34	54.57	77.59	62.05	95.65	103.51	128.67	78.69
Merged-chr3-88425214-3	chr3	88424707	88425707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178696)	promoter-TSS (NM_178696)	-66.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	140.15	99.99	49.02	109.98	74.64	49.03	130.97	113.19	58.71
Merged-chr9-123260802-3	chr9	123260284	123261284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002267)	promoter-TSS (NM_001002267)	5.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	5.72	1.84	11.1	4.05	3.27	4.82	3.17	0.88	1.25
Merged-chr15-38660245-3	chr15	38659730	38660730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1674.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	50.91	50.23	53.65	49.25	46.18	37.78	45.42	34.49	34.35
Merged-chr18-60560779-3	chr18	60560309	60561309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025776)	promoter-TSS (NM_025776)	23.0	NM_025776	66810.0	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	156.17	178.78	130.42	175.43	139.95	187.28	149.98	138.84	113.04
Merged-chr9-85340480-3	chr9	85339966	85340966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13316.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	22.88	47.0	33.3	33.74	33.59	26.53	24.29	44.22	38.72
Merged-chr1-172335956-3	chr1	172335466	172336466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5244.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	160.75	117.04	76.77	158.56	94.23	80.38	57.03	56.16	43.72
Merged-chr8-120790869-3	chr8	120790365	120791365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52226.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	28.6	9.22	3.7	34.41	15.39	12.86	27.46	13.27	8.12
Merged-chr4-156236049-3	chr4	156235551	156236551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	41.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	139.01	123.49	140.59	147.76	143.68	147.09	160.54	130.0	86.81
Merged-chr14-122013784-3	chr14	122013288	122014288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-20886.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	14.87	8.29	7.4	15.52	7.46	12.86	9.51	3.54	9.37
Merged-chr6-38941210-3	chr6	38940699	38941699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	22213.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	180.2	156.21	135.04	184.87	115.69	106.1	142.59	161.83	91.81
Merged-chr15-101247036-1	chr15	101246536	101247536	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19810.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	187.63	125.33	79.55	153.16	104.96	110.92	207.01	200.74	124.91
Merged-chr5-118245115-3	chr5	118244609	118245609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172998)	promoter-TSS (NM_172998)	-84.0	NM_001109902	269695.0	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	79.52	64.97	49.02	63.42	85.84	57.07	73.93	65.44	33.72
Merged-chrX-99695569-3	chrX	99695072	99696072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125497.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	23.45	26.26	20.35	33.06	12.6	17.68	41.19	26.53	34.97
Merged-chr4-133170291-3	chr4	133169810	133170810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25345.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	161.89	153.44	109.14	189.6	98.9	132.63	152.09	214.01	99.92
Merged-chr11-111066072-3	chr11	111065591	111066591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008425)	promoter-TSS (NM_008425)	-73.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	89.81	81.1	91.57	73.54	60.18	85.2	106.67	112.75	63.08
Merged-chr7-109986379-3	chr7	109985849	109986849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-119.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	184.2	195.37	106.37	184.2	207.6	132.63	166.88	242.31	99.3
Merged-chr12-113014313-3	chr12	113013831	113014831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291444)	promoter-TSS (NM_001291444)	-177.0	NM_001291445	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	91.53	86.63	135.04	56.0	63.91	94.85	76.05	56.16	65.58
Merged-chr10-36974494-4	chr10	36973994	36974994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-50.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	182.49	172.79	140.59	165.98	153.95	132.63	174.27	137.96	94.93
Merged-chr2-5379333-3	chr2	5378833	5379833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030601)	promoter-TSS (NR_030601)	-57.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	18.31	24.42	11.1	16.19	11.2	5.63	20.07	8.84	9.99
Merged-chr2-114200337-3	chr2	114199825	114200825	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	1107.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	328.93	269.1	165.57	266.51	220.19	157.54	228.14	261.76	111.79
Merged-chr14-25842145-3	chr14	25841667	25842667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013469)	promoter-TSS (NM_013469)	12.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	105.83	119.8	38.85	170.7	165.14	105.3	120.41	110.54	40.59
Merged-chr3-87910827-3	chr3	87910336	87911336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	3986.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	56.63	47.0	28.67	76.24	49.45	65.91	90.83	62.35	44.97
Merged-chr4-102588855-3	chr4	102588339	102589339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	-1004.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	25.17	20.74	22.2	19.57	8.86	8.04	17.96	19.9	8.74
Merged-chr11-54787034-3	chr11	54786556	54787556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	CpG	647.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	227.11	222.56	148.92	203.09	186.6	163.97	162.65	168.91	114.91
Merged-chr10-34418544-3	chr10	34418042	34419042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347463)	promoter-TSS (NM_001347463)	9.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	147.02	166.34	141.52	132.24	129.69	121.37	154.2	139.28	104.92
Merged-chr7-128461826-3	chr7	128461316	128462316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-143.0	NM_001347640	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	232.83	203.67	143.37	207.81	190.8	161.56	196.45	176.87	111.79
Merged-chr14-9389435-3	chr14	9388934	9389934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-494661.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	42.9	34.56	44.4	53.3	38.25	43.4	50.7	53.06	31.85
Merged-chr11-115189517-3	chr11	115189018	115190018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	2031.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	518.85	377.84	258.99	400.78	298.57	192.91	383.4	457.2	197.98
Merged-chr13-41249784-3	chr13	41249322	41250322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135577)	promoter-TSS (NM_001135577)	-22.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	108.12	83.4	89.72	124.15	85.37	91.63	105.62	91.09	54.33
Merged-chr16-20302391-3	chr16	20301876	20302876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005767)	promoter-TSS (NM_001005767)	-14.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	68.07	62.67	77.7	65.45	57.85	93.24	77.1	64.56	60.58
Merged-chr7-125552230-3	chr7	125551734	125552734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-48.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	306.05	339.6	257.14	266.51	327.96	208.18	293.62	389.11	186.11
Merged-chr8-120763436-3	chr8	120762910	120763910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24771.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	21.17	14.75	18.5	20.24	13.53	22.51	10.56	13.71	11.87
Merged-chr8-106153139-3	chr8	106152648	106153648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	2794.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	196.21	147.45	87.87	185.55	180.54	126.19	197.51	200.74	109.29
Merged-chr10-84438218-3	chr10	84437714	84438714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	2257.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	18.88	15.67	5.55	16.87	19.59	9.65	16.9	12.38	8.74
Merged-chr4-152138685-3	chr4	152138184	152139184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207687, intron 4 of 15)	CpG	-2359.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	44.05	39.17	32.37	33.74	20.53	36.17	39.08	31.39	13.74
Merged-chr8-88668772-3	chr8	88668279	88669279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	21432.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	127.0	93.08	98.05	95.81	54.58	90.02	74.99	70.3	69.32
Merged-chr17-45758133-3	chr17	45757624	45758624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	URR1A|DNA|hAT-Charlie	23618.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	88.67	68.66	75.85	97.16	91.9	95.65	52.81	34.93	28.73
Merged-chr13-45001591-3	chr13	45001058	45002058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	538.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	347.24	299.97	232.16	365.02	364.34	229.88	362.27	330.74	123.03
Merged-chr10-81137443-3	chr10	81136947	81137947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	CpG	1176.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	187.63	133.17	146.14	172.05	103.1	143.88	156.32	119.39	101.17
Merged-chr5-130002999-3	chr5	130002505	130003505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010368)	promoter-TSS (NM_010368)	44.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	205.37	236.84	166.49	228.73	242.12	156.74	196.45	226.83	123.03
Merged-chr12-5277139-3	chr12	5276626	5277626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98556.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	10.87	12.9	7.4	15.52	7.0	12.86	19.01	16.8	21.86
Merged-chr7-67631037-1	chr7	67630537	67631537	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028143, intron 2 of 9)	intron (NR_028143, intron 2 of 9)	14199.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	1.72	2.76	1.85	4.05	1.87	1.61	3.17	3.98	2.5
Merged-chr11-115933603-3	chr11	115933109	115934109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020483)	promoter-TSS (NM_020483)	-50.0	NM_020483	57230.0	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	128.71	135.01	86.95	143.71	154.41	102.08	109.84	123.36	69.95
Merged-chr6-48818019-3	chr6	48817515	48818515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22973.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	4.0	6.91	0.0	9.45	1.87	6.43	2.11	1.77	3.75
Merged-chr2-170317003-3	chr2	170316496	170317496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39365.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	29.17	11.52	8.32	35.76	8.86	13.66	33.8	6.19	18.11
Merged-chr8-94187527-3	chr8	94187022	94188022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8433.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	20.59	18.43	9.25	37.11	22.39	17.68	20.07	19.9	19.98
Merged-chr5-137080011-3	chr5	137079502	137080502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7730.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	25.17	8.75	15.72	12.14	9.33	25.72	35.91	13.27	7.49
Merged-chr6-128438693-3	chr6	128438202	128439202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	-46.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	78.94	64.51	78.62	88.39	96.1	84.4	84.49	58.81	41.22
Merged-chr5-8944076-3	chr5	8943567	8944567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 21 of 27)	MIR|SINE|MIR	50346.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	6.86	5.53	3.7	10.8	5.13	1.61	4.22	4.42	1.87
Merged-chr12-111377767-3	chr12	111377279	111378279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183016)	promoter-TSS (NM_183016)	-61.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	237.97	170.95	160.02	251.67	163.74	184.87	224.97	168.91	114.29
Merged-chr7-4741277-3	chr7	4740790	4741790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358044, intron 1 of 8)	intron (NM_001358044, intron 1 of 8)	1163.0	NM_001358044	232811.0	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	26.31	25.34	37.0	26.31	16.33	53.05	30.63	21.22	23.11
Merged-chr17-39846142-2	chr17	39845655	39846655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	3158.0	NR_046233	100861531.0		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	357.53	257.12	353.33	186.9	98.43	219.43	124.63	64.56	262.93
Merged-chr15-76710564-3	chr15	76710054	76711054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145471)	promoter-TSS (NM_145471)	5.0	NM_058214	79456.0	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	107.55	68.66	81.4	76.24	63.91	85.2	81.33	77.38	75.57
Merged-chr9-119365431-3	chr9	119364928	119365928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359699, intron 3 of 17)	B3A|SINE|B2	8047.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	2.86	14.28	7.4	11.47	8.4	12.86	10.56	15.03	14.36
Merged-chr14-54603489-3	chr14	54602988	54603988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028890, intron 1 of 6)	CpG	2420.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	54.92	61.75	46.25	80.29	92.37	96.45	136.25	119.39	70.57
Merged-chr7-127254272-3	chr7	127253753	127254753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6414.0	NM_023203	66422.0	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	128.14	79.25	117.47	120.77	113.36	112.53	107.73	108.33	76.19
Merged-chr10-127674905-3	chr10	127674380	127675380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2185.0	NM_173732	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	42.9	38.71	33.3	33.06	23.79	40.99	43.3	57.04	28.1
Merged-chr11-8624742-3	chr11	8624240	8625240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	CpG	39795.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	94.96	54.37	52.72	97.16	64.38	51.44	53.87	33.16	16.86
Merged-chr18-70436388-3	chr18	70435890	70436890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36064.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	94.39	95.84	48.1	63.42	62.05	48.23	115.12	125.58	78.69
Merged-chr11-74832952-3	chr11	74832466	74833466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	2042.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	235.11	201.82	130.42	219.28	161.88	168.8	239.75	243.19	113.04
Merged-chrX-13281914-3	chrX	13281436	13282436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	CpG	914.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	256.28	258.5	249.74	255.72	182.87	176.03	224.97	186.59	139.27
Merged-chr12-85339464-3	chr12	85338983	85339983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145138)	promoter-TSS (NM_145138)	-121.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	296.9	242.37	192.39	267.19	194.07	235.51	312.63	255.13	165.5
Merged-chr2-120128770-3	chr2	120128264	120129264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 2 of 5)	intron (NM_133838, intron 2 of 5)	25811.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	54.35	55.75	70.3	78.27	39.19	61.89	49.64	64.56	38.72
Merged-chr13-12575166-3	chr13	12574657	12575657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 2 of 15)	intron (NM_026184, intron 2 of 15)	9274.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	78.94	118.88	61.05	68.82	80.24	78.77	105.62	135.75	42.47
Merged-chrX-73786575-3	chrX	73786072	73787072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166480)	promoter-TSS (NM_001166480)	325.0	NM_008323	15929.0	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	127.0	108.28	88.8	84.34	65.78	127.8	126.74	140.17	68.7
Merged-chr2-26475221-3	chr2	26474719	26475719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 15 of 33)	intron (NM_008714, intron 15 of 33)	-5100.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	78.94	71.88	58.27	97.83	57.38	73.95	65.48	68.54	44.97
Merged-chr7-63937792-3	chr7	63937288	63938288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	1127.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	479.95	356.65	351.48	435.87	285.04	276.5	373.89	324.99	214.84
Merged-chr19-6293483-3	chr19	6292981	6293981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-12976.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	179.62	159.43	102.67	149.11	84.9	134.23	102.45	134.42	105.55
Merged-chr11-75468079-1	chr11	75467579	75468579	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291156)	promoter-TSS (NM_001291156)	29.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	11.44	7.83	0.0	16.87	10.26	15.27	5.28	3.1	11.24
Merged-chr17-11613268-2	chr17	11612760	11613760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 6 of 11)	intron (NM_016694, intron 6 of 11)	269929.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	6.29	6.45	5.55	2.7	3.73	2.41	4.22	0.88	2.5
Merged-chr3-69005942-3	chr3	69005430	69006430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356976, intron 1 of 23)	CpG	1192.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	147.59	148.37	172.97	108.63	111.96	108.51	117.24	106.56	112.42
Merged-chr4-86575703-3	chr4	86575202	86576202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	29.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	156.17	133.17	102.67	156.53	153.01	104.49	157.37	160.51	73.69
Merged-chr5-35583570-3	chr5	35583076	35584076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357020, exon 1 of 19)	5' UTR (NM_001357020, exon 1 of 19)	542.0	NM_030721	80911.0	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	341.52	352.5	209.96	333.99	382.07	245.16	340.09	417.41	155.51
Merged-chr13-55447845-3	chr13	55447347	55448347	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038018, intron 1 of 15)	intron (NM_001038018, intron 1 of 15)	2516.0	NM_001112711	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	32.61	16.59	16.65	21.59	19.59	24.92	31.69	53.94	29.35
Merged-chr8-114439528-3	chr8	114439026	114440026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-126.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	33.75	36.4	24.97	53.3	42.92	28.94	39.08	49.52	33.72
Merged-chr14-78651801-1	chr14	78651301	78652301	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 3 of 29)	intron (NM_001081336, intron 3 of 29)	-7350.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	17.16	23.5	30.52	8.77	12.6	8.84	8.45	9.29	9.99
Merged-chr16-78217098-3	chr16	78216587	78217587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38367.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	121.28	95.84	74.92	218.61	124.56	148.7	200.68	170.23	115.54
Merged-chr18-84685700-3	chr18	84685200	84686200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023149)	promoter-TSS (NM_023149)	2.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	218.52	249.28	137.82	209.84	237.92	204.97	166.88	222.85	120.53
Merged-chr2-120100101-3	chr2	120099604	120100604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	54471.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	107.55	98.61	79.55	118.75	71.38	101.28	115.12	150.34	93.05
Merged-chr17-31594785-3	chr17	31594286	31595286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027493, intron 6 of 11)	L1MD|LINE|L1	30013.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	39.47	30.41	18.5	38.46	21.46	20.9	17.96	11.05	21.23
Merged-chr3-158062296-3	chr3	158061752	158062752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25570.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	78.37	69.12	65.67	63.42	55.51	53.05	80.27	105.24	52.46
Merged-chr2-127584721-3	chr2	127584210	127585210	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028141)	promoter-TSS (NM_028141)	-33.0	NM_028141	72180.0	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	11.44	11.06	9.25	19.57	10.26	16.08	20.07	10.17	7.49
Merged-chr18-34859905-3	chr18	34859414	34860414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1293.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	213.95	125.33	133.19	178.13	118.96	139.06	177.44	173.33	115.54
Merged-chr14-63082310-3	chr14	63081796	63082796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	27223.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	190.49	185.7	147.07	199.72	165.14	163.17	208.07	193.67	98.68
Merged-chr17-31003462-2	chr17	31002966	31003966	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	48783.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	16.02	21.2	16.65	62.75	38.72	45.82	90.83	107.45	43.09
Merged-chr8-95633469-3	chr8	95632984	95633984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	-75.0	NM_030198	78833.0	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	6.86	7.83	12.95	13.49	6.53	15.27	8.45	7.96	9.99
Merged-chr19-56749612-3	chr19	56749125	56750125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27253.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	93.82	84.78	54.57	91.76	83.04	90.02	91.89	106.56	66.2
Merged-chr6-83381816-3	chr6	83381296	83382296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 5 of 11)	intron (NM_001347313, intron 5 of 11)	19306.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	64.07	53.91	49.95	36.43	35.92	42.6	36.97	34.05	58.71
Merged-chr7-88278003-3	chr7	88277469	88278469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311790)	promoter-TSS (NM_001311790)	-116.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	307.76	297.67	185.92	326.56	274.77	286.95	239.75	319.24	128.03
Merged-chr7-30953591-3	chr7	30953099	30954099	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011680, intron 7 of 9)	intron (NM_011680, intron 7 of 9)	3204.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	35.47	27.19	24.97	36.43	20.06	37.78	30.63	32.28	25.61
Merged-chr11-75651327-5	chr11	75650839	75651839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008659)	promoter-TSS (NM_008659)	-170.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	419.32	305.5	275.64	381.22	263.58	237.12	258.77	299.79	196.73
Merged-chr5-139324987-3	chr5	139324483	139325483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	481.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	148.73	103.68	126.72	151.81	110.56	180.05	144.7	116.73	86.81
Merged-chr7-80641644-3	chr7	80641128	80642128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	5611.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	178.48	133.17	80.47	115.38	94.7	81.99	101.39	106.12	91.81
Merged-chr4-128727506-3	chr4	128726995	128727995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195083)	promoter-TSS (NM_001195083)	-76.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	169.9	147.45	178.52	178.13	97.97	117.35	188.0	159.62	89.93
Merged-chr15-78321040-3	chr15	78320541	78321541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NM_001358854	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	12.01	11.52	14.8	9.45	5.6	26.53	19.01	7.96	7.49
Merged-chr1-74368443-3	chr1	74367944	74368944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033345, exon 10 of 10)	exon (NM_001033345, exon 10 of 10)	6336.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	255.14	254.35	220.14	275.28	171.68	176.83	202.79	241.42	138.65
Merged-chr9-72985488-3	chr9	72984993	72985993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114328)	promoter-TSS (NM_001114328)	-11.0	NM_001286545	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	49.2	63.59	42.55	44.53	55.05	40.99	47.53	30.51	34.35
Merged-chr18-77856782-3	chr18	77856288	77857288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-60398.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	31.46	23.04	40.7	38.46	32.19	49.03	28.52	27.86	34.97
Merged-chr1-39579345-3	chr1	39578844	39579844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1997.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	208.23	213.34	129.49	179.47	141.82	145.49	156.32	151.66	106.79
Merged-chr19-4231822-3	chr19	4231311	4232311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027196)	promoter-TSS (NM_027196)	-82.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	235.69	170.95	195.17	220.63	135.75	180.85	199.62	243.63	154.88
Merged-chr2-122234834-3	chr2	122234360	122235360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146126)	promoter-TSS (NM_146126)	21.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	47.48	43.31	16.65	69.5	56.45	46.62	52.81	30.51	15.61
Merged-chr4-141076839-3	chr4	141076355	141077355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149724, intron 1 of 8)	intron (NR_149724, intron 1 of 8)	1502.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	93.24	105.98	116.54	78.94	76.51	86.81	95.06	94.18	84.94
Merged-chr16-21637523-3	chr16	21637005	21638005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	57160.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	171.62	218.41	175.74	252.34	218.33	236.31	249.26	304.65	139.89
Merged-chr16-22119723-3	chr16	22119246	22120246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	43553.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	378.13	382.45	229.39	398.76	464.18	252.39	422.47	626.11	224.21
Merged-chr9-4309705-3	chr9	4309200	4310200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026276)	promoter-TSS (NM_026276)	-43.0	NM_001164574	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	185.92	224.86	156.32	215.91	197.33	168.8	205.96	264.86	136.77
Merged-chr9-107872845-3	chr9	107872350	107873350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011251)	promoter-TSS (NM_011251)	-31.0	NM_029169	19654.0	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	187.63	176.02	165.57	154.51	149.28	193.71	182.72	125.13	119.91
Merged-chr13-9424700-3	chr13	9424196	9425196	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	MTA_Mm|LTR|ERVL-MaLR	148171.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	41.19	40.09	36.07	19.57	14.93	25.72	32.74	38.47	24.98
Merged-chr6-108065316-3	chr6	108064813	108065813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178391, intron 1 of 1)	intron (NM_178391, intron 1 of 1)	268.0	NM_178391	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	74.94	57.6	53.65	62.75	52.25	58.68	95.06	71.63	43.72
Merged-chr2-151587500-1	chr2	151587000	151588000	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145535, intron 7 of 8)	intron (NM_145535, intron 7 of 8)	14877.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	5.72	0.92	0.0	3.37	0.0	1.61	4.22	0.44	2.5
Merged-chr11-32642461-3	chr11	32641976	32642976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271349)	promoter-TSS (NM_001271349)	-79.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	316.92	304.12	274.71	278.66	286.44	247.57	289.39	230.81	187.98
Merged-chr13-41801525-1	chr13	41801025	41802025	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	45963.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	9.15	6.45	3.7	6.07	5.13	23.31	5.28	4.42	4.37
Merged-chr4-140173977-3	chr4	140173484	140174484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	31111.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	44.62	50.23	31.45	41.16	54.58	59.48	119.35	104.35	54.96
Merged-chr4-119978050-3	chr4	119977556	119978556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	163378.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	141.3	112.89	95.27	170.03	114.76	166.38	142.59	130.0	84.94
Merged-chr17-84183615-3	chr17	84183123	84184123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001806)	TTS (NM_001001806)	4324.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	58.92	64.51	61.97	68.82	58.31	79.58	83.44	76.05	56.21
Merged-chr11-74505505-3	chr11	74504943	74505943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	84715.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	81.8	77.87	48.1	65.45	52.25	66.71	87.66	91.09	40.59
Merged-chr5-24266650-3	chr5	24266123	24267123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9095.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	38.33	51.15	48.1	87.71	95.63	88.42	36.97	41.56	28.73
Merged-chr11-23771206-5	chr11	23770615	23771615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009044)	promoter-TSS (NM_009044)	-145.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	494.25	391.67	357.96	522.23	380.2	307.05	424.59	401.93	229.83
Merged-chr6-89415974-3	chr6	89415456	89416456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	L2b|LINE|L2	-53343.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	23.45	11.98	11.1	20.24	7.46	12.86	17.96	16.8	7.49
Merged-chr16-59604287-3	chr16	59603785	59604785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32660.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	10.87	9.68	1.85	24.96	8.4	21.7	9.51	16.36	17.49
Merged-chr11-60769601-3	chr11	60769101	60770101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	MTD|LTR|ERVL-MaLR	7764.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	41.76	45.62	58.27	126.17	92.84	106.9	126.74	137.07	85.56
Merged-chr7-127876839-3	chr7	127876311	127877311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172749)	promoter-TSS (NM_172749)	25.0	NM_146259	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	61.21	63.13	165.57	89.06	100.3	185.68	120.41	103.02	100.55
Merged-chr2-84425310-3	chr2	84424790	84425790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018782)	promoter-TSS (NM_018782)	-24.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	82.95	111.05	50.87	99.86	80.24	84.4	77.1	84.9	65.58
Merged-chr14-21750561-3	chr14	21750063	21751063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026283)	promoter-TSS (NM_026283)	32.0	NM_001359954	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	223.1	224.4	193.32	203.76	192.67	172.81	177.44	209.15	172.99
Merged-chr2-158163267-3	chr2	158162786	158163786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16894.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	49.2	31.79	42.55	31.71	18.19	10.45	48.58	65.44	28.73
Merged-chr16-38131973-3	chr16	38131486	38132486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-42726.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	465.08	455.25	192.39	365.7	328.89	193.71	232.36	298.02	154.26
Merged-chr4-128720238-3	chr4	128719722	128720722	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 7 of 14)	intron (NM_018774, intron 7 of 14)	-7349.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	94.39	79.25	53.65	113.35	73.71	73.95	153.15	156.09	68.07
Merged-chr2-79214121-1	chr2	79213621	79214621	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41305.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	12.01	10.6	16.65	11.47	12.13	8.04	9.51	9.73	4.37
Merged-chr4-75278306-3	chr4	75277805	75278805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025849)	promoter-TSS (NM_025849)	-13.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	101.83	95.84	79.55	102.56	72.78	89.22	103.51	101.26	90.56
Merged-chr8-128654622-8	chr8	128654055	128655055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31099.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	160.18	183.85	118.39	193.64	132.02	151.92	149.98	166.25	113.66
Merged-chr16-36936042-3	chr16	36935518	36936518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1035.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	304.33	298.59	180.37	275.96	218.33	221.04	371.78	374.07	189.86
Merged-chr3-131272068-3	chr3	131271583	131272583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008212)	promoter-TSS (NM_008212)	18.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	30.32	23.04	37.92	39.81	33.59	43.4	30.63	25.2	18.74
Merged-chr4-8910547-3	chr4	8910022	8911022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	159198.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	18.88	11.52	9.25	17.54	13.53	12.06	11.62	16.8	12.49
Merged-chr13-84348123-1	chr13	84347623	84348623	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	125827.0	NM_175187	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	2.86	2.3	0.0	2.02	2.8	3.22	1.06	0.88	0.0
Merged-chr1-64374880-3	chr1	64374400	64375400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157904.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	309.48	292.6	213.66	269.89	187.54	206.57	241.87	284.31	121.16
Merged-chr5-146948637-3	chr5	146948134	146949134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-23.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	63.5	38.71	39.77	45.88	63.91	68.32	177.44	151.66	73.69
Merged-chr6-83078536-3	chr6	83078030	83079030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197992, intron 1 of 8)	CpG	140.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	90.96	67.27	86.02	104.58	79.77	98.87	95.06	52.62	59.95
Merged-chr9-41073690-3	chr9	41073190	41074190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	5816.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	35.47	35.94	27.75	38.46	20.99	30.54	65.48	72.52	45.59
Merged-chr6-17611829-3	chr6	17611317	17612317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-25193.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	66.36	75.11	61.97	66.8	69.98	73.95	103.51	110.1	69.32
Merged-chr9-66974962-3	chr9	66974461	66975461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030717, intron 1 of 5)	CpG	523.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	191.64	158.97	149.84	213.21	172.61	123.78	158.43	126.46	114.29
Merged-chr15-38285793-3	chr15	38285296	38286296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	14104.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	67.5	92.16	65.67	66.8	70.44	87.61	137.3	147.68	74.94
Merged-chr8-35428299-3	chr8	35427805	35428805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52564.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	24.6	11.52	9.25	12.14	11.66	22.51	13.73	13.71	21.23
Merged-chr6-100416204-3	chr6	100415710	100416710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111190.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	6.29	5.99	9.25	4.72	5.6	10.45	7.39	3.54	5.62
Merged-chr6-113663507-3	chr6	113662979	113663979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	25012.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	243.12	173.72	127.64	220.63	164.68	172.81	198.56	224.62	124.28
Merged-chr4-98322444-3	chr4	98321939	98322939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60826.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	5.72	6.45	1.85	2.02	6.53	1.61	4.22	3.98	7.49
Merged-chr17-69201149-3	chr17	69200645	69201645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	41789.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	326.07	315.64	185.92	257.74	213.66	203.36	222.86	313.5	154.26
Merged-chr5-148542397-3	chr5	148541909	148542909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	9264.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	135.0	132.25	108.22	100.53	70.44	89.22	104.56	131.77	69.95
Merged-chr11-121703378-3	chr11	121702878	121703878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	951.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	371.26	395.35	232.16	385.94	414.73	304.64	349.6	424.48	185.48
Merged-chr2-174329897-3	chr2	174329428	174330428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-142.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	191.64	121.65	158.17	192.97	108.23	117.35	195.39	96.83	97.43
Merged-chr12-104231030-3	chr12	104230527	104231527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-5120.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	64.64	84.78	98.05	48.58	37.79	60.28	94.0	84.45	69.32
Merged-chr15-94543657-3	chr15	94543150	94544150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029926)	promoter-TSS (NM_029926)	-10.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	144.16	170.03	188.69	174.75	116.63	172.81	199.62	177.31	139.27
Merged-chr17-80564770-3	chr17	80564287	80565287	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033443)	promoter-TSS (NM_001033443)	-953.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	263.72	351.58	160.94	224.01	238.39	160.76	188.0	325.88	115.54
Merged-chr11-100860415-3	chr11	100859929	100860929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164062)	promoter-TSS (NM_001164062)	-55.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	62.93	56.68	39.77	60.05	60.65	76.36	49.64	62.35	29.98
Merged-chr1-105663233-3	chr1	105662737	105663737	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029349)	promoter-TSS (NM_029349)	439.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	44.05	50.69	51.8	52.63	72.31	79.58	72.88	86.22	48.09
Merged-chr6-120357415-3	chr6	120356911	120357911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026028)	promoter-TSS (NM_026028)	58.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	60.07	85.71	58.27	86.36	75.11	64.3	77.1	81.8	62.45
Merged-chr11-4849582-3	chr11	4849072	4850072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361676)	promoter-TSS (NM_001361676)	-28.0	NM_010898	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	191.64	153.9	123.94	175.43	129.22	143.88	186.94	139.72	88.68
Merged-chr17-80009016-3	chr17	80008513	80009513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53255.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	13.16	7.37	11.1	14.17	6.06	10.45	8.45	9.73	3.75
Merged-chr14-47351620-2	chr14	47351108	47352108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR1B|LTR|ERV1	-22252.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	317.49	306.88	197.02	345.46	300.43	320.71	176.38	243.19	86.81
Merged-chr7-35036352-1	chr7	35035852	35036852	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 12 of 14)	intron (NM_008820, intron 12 of 14)	20214.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	17.16	16.59	16.65	18.22	19.13	19.29	15.84	9.73	22.48
Merged-chr10-89443339-3	chr10	89442850	89443850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	617.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	338.66	379.23	206.26	400.78	485.64	341.61	288.34	378.05	171.12
Merged-chr19-6418708-3	chr19	6418216	6419216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-22.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	20.59	16.59	14.8	31.71	15.39	26.53	25.35	22.55	14.99
Merged-chrX-73765463-3	chrX	73764911	73765911	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019587, intron 15 of 34)	intron (NM_019587, intron 15 of 34)	8308.0	NM_019587	140571.0	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	73.22	59.44	32.37	29.69	55.51	44.21	58.09	47.75	38.1
Merged-chr2-156417422-3	chr2	156416929	156417929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3480.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	30.32	22.12	31.45	44.53	19.13	60.28	57.03	52.18	23.73
Merged-chr18-62186622-3	chr18	62186109	62187109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6509.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	100.68	83.86	57.35	79.62	62.51	69.13	89.78	75.61	69.32
Merged-chr9-78532232-3	chr9	78531719	78532719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50495.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	254.56	268.18	186.84	292.15	241.18	216.22	269.33	312.17	141.14
Merged-chr19-43521367-3	chr19	43520827	43521827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010324, intron 1 of 8)	intron (NM_010324, intron 1 of 8)	3278.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	101.83	100.45	85.1	110.65	82.11	72.34	158.43	197.21	116.16
Merged-chr9-15279965-3	chr9	15279478	15280478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144933)	promoter-TSS (NM_144933)	-111.0	NM_144933	234959.0	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	165.32	196.75	151.69	162.61	172.14	143.88	128.85	156.97	118.04
Merged-chr12-76961634-3	chr12	76961169	76962169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 1 of 4)	intron (NM_001361663, intron 1 of 4)	579.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	275.16	293.52	218.29	262.47	330.29	271.68	325.31	368.33	199.85
Merged-chr3-103214351-1	chr3	103213851	103214851	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	42696.0	NM_001356331	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	12.01	11.52	28.67	20.24	14.93	13.66	121.46	128.67	121.16
Merged-chr1-148764886-1	chr1	148764386	148765386	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	1157553.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.58	5.53	5.55	8.1	4.67	2.41	5.28	9.29	7.49
Merged-chr6-83650722-1	chr6	83650222	83651222	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	5394.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	56.06	86.17	64.75	78.94	130.62	117.35	102.45	93.3	40.59
Merged-chr11-29728109-3	chr11	29727603	29728603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	9540.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	34.9	36.86	32.37	49.93	50.85	36.17	49.64	47.31	28.73
Merged-chr10-9707194-3	chr10	9706673	9707673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22451.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	30.32	36.4	11.1	56.0	34.06	45.01	32.74	34.93	43.72
Merged-chr8-86888081-3	chr8	86887579	86888579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2821.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	68.07	82.48	49.02	108.63	93.77	135.84	53.87	51.29	59.33
Merged-chr5-8422777-3	chr5	8422280	8423280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289595)	promoter-TSS (NM_001289595)	-58.0	NM_001289596	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	101.25	84.78	63.82	120.77	85.84	102.88	105.62	79.15	49.96
Merged-chr14-102982659-4	chr14	102982148	102983148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039592)	promoter-TSS (NR_039592)	-11.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	240.83	221.18	198.87	240.2	184.27	210.59	177.44	232.14	137.4
Merged-chr7-98321276-3	chr7	98320780	98321780	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360615)	promoter-TSS (NM_001360615)	-72.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	152.17	138.7	89.72	158.56	132.02	102.88	73.93	79.59	56.83
Merged-chr12-83688614-3	chr12	83688085	83689085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008943)	promoter-TSS (NM_008943)	22.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	402.73	427.61	279.34	431.82	452.05	388.23	439.37	528.39	254.81
Merged-chr4-109413966-1	chr4	109413466	109414466	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153392, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	-1681.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	5.15	0.46	0.0	10.8	6.53	4.02	1.06	0.88	2.5
Merged-chr18-61131490-3	chr18	61130987	61131987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037859)	TTS (NM_001037859)	14019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	50.91	56.68	76.77	51.28	44.32	77.16	63.37	55.27	59.33
Merged-chr5-105012712-3	chr5	105012213	105013213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-29996.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	78.37	76.03	61.05	62.07	58.78	65.91	72.88	74.73	45.59
Merged-chr5-114928425-3	chr5	114927907	114928907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359945, intron 2 of 5)	intron (NM_001359945, intron 2 of 5)	5167.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	74.37	34.1	41.62	68.15	28.92	28.94	68.65	48.64	23.73
Merged-chr3-109051907-3	chr3	109051394	109052394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24287.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	20.02	21.66	21.27	33.74	27.06	26.53	13.73	9.29	13.74
Merged-chr11-120643804-3	chr11	120643313	120644313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348222)	promoter-TSS (NM_001348222)	-44.0	NM_001348222	209027.0	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	P5CR 1|P5CR1	pyrroline-5-carboxylate reductase 1	protein-coding	4.58	0.46	0.0	5.4	2.33	4.82	2.11	1.77	1.25
Merged-chr2-32775660-3	chr2	32775143	32776143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	-10.0	NM_001290563	338348.0	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	117.27	97.23	72.15	93.11	65.78	75.56	89.78	83.57	60.58
Merged-chr11-29373562-3	chr11	29373083	29374083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	-589.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	104.11	99.53	116.54	93.79	93.77	114.94	114.07	79.59	70.57
Merged-chr13-23739781-3	chr13	23739270	23740270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_015786)	TTS (NM_015786)	963.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	356.39	345.13	213.66	295.53	261.24	219.43	249.26	288.29	185.48
Merged-chr14-118132803-3	chr14	118132288	118133288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029578)	promoter-TSS (NM_029578)	-23.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	21.17	18.43	21.27	18.89	20.06	28.94	24.29	19.01	14.99
Merged-chr3-69721994-3	chr3	69721490	69722490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133787)	promoter-TSS (NM_133787)	-65.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	156.74	118.42	110.99	253.69	173.54	132.63	228.14	160.95	53.71
Merged-chr10-100589207-3	chr10	100588695	100589695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175128)	promoter-TSS (NM_175128)	64.0	NM_175128	68281.0	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	13.16	13.36	28.67	14.84	16.33	17.68	19.01	15.03	6.25
Merged-chr4-3574874-3	chr4	3574369	3575369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054089)	promoter-TSS (NM_054089)	-10.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	131.0	120.26	120.24	141.69	136.22	141.47	194.34	151.66	94.93
Merged-chr6-122654571-3	chr6	122654058	122655058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	28134.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	191.64	182.47	91.57	180.82	110.1	113.33	162.65	204.28	110.54
Merged-chr13-107903743-3	chr13	107903208	107904208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13644.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	164.75	139.62	115.62	136.29	109.16	99.67	115.12	107.89	88.68
Merged-chr10-26780751-3	chr10	26780256	26781256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	8244.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	91.53	117.96	62.9	103.91	94.23	81.99	76.05	81.36	69.32
Merged-chr14-73388715-3	chr14	73388189	73389189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3400.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	179.05	234.54	71.22	170.03	146.02	114.94	138.36	176.87	98.68
Merged-chr4-150202899-3	chr4	150202396	150203396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1761.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	42.33	38.71	49.95	42.51	41.05	56.27	66.54	42.01	58.71
Merged-chr19-6067944-3	chr19	6067455	6068455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028454)	promoter-TSS (NM_028454)	-105.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	26.31	19.81	33.3	31.71	21.46	57.87	27.46	33.6	34.97
Merged-chr10-81627590-5	chr10	81627022	81628022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181586)	promoter-TSS (NM_181586)	86.0	NM_181586	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	152.17	134.09	150.77	114.7	125.02	148.7	171.1	196.76	75.57
Merged-chr7-120940499-1	chr7	120939999	120940999	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025298, exon 18 of 21)	exon (NM_025298, exon 18 of 21)	22755.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	2.86	0.92	0.0	11.47	3.73	9.65	4.22	1.33	5.0
Merged-chr6-42353392-3	chr6	42352893	42353893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	3565.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	122.99	131.32	65.67	122.12	61.11	77.16	87.66	110.54	76.19
Merged-chr11-106779515-3	chr11	106778996	106779996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027785)	promoter-TSS (NR_027785)	-30.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	328.36	248.82	177.59	279.33	233.72	219.43	194.34	213.12	176.12
Merged-chr4-150281540-3	chr4	150281025	150282025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085492)	promoter-TSS (NM_001085492)	-391.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	96.11	65.43	89.72	63.42	73.71	90.83	90.83	85.78	52.46
Merged-chr4-133757559-3	chr4	133757085	133758085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	112.69	158.51	113.77	97.16	117.56	118.16	110.9	110.98	86.18
Merged-chr6-122946932-3	chr6	122946388	122947388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5627.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	89.24	115.2	53.65	92.44	79.77	85.2	102.45	105.68	56.21
Merged-chr9-20643339-3	chr9	20642859	20643859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013911)	promoter-TSS (NM_013911)	23.0	NM_025401	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	103.54	96.76	61.05	66.12	49.45	54.66	98.23	107.89	67.45
Merged-chr14-41013814-3	chr14	41013314	41014314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316735)	promoter-TSS (NM_001316735)	19.0	NM_001316734	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	25.74	28.11	29.6	33.74	42.92	30.54	46.47	49.96	15.61
Merged-chr15-53324474-3	chr15	53323979	53324979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	21704.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	13.16	19.35	25.9	19.57	14.93	4.82	16.9	11.05	4.37
Merged-chr10-23787294-3	chr10	23786821	23787821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-112.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	109.26	123.49	105.44	118.75	117.09	115.75	95.06	126.46	70.57
Merged-chr11-117115043-3	chr11	117114502	117115502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029459)	promoter-TSS (NR_029459)	-170.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	315.77	205.51	164.64	243.57	186.14	172.01	238.7	227.27	160.5
Merged-chr1-134078343-2	chr1	134077836	134078836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	819.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	320.92	294.44	260.84	281.36	304.16	239.53	227.08	273.7	214.84
Merged-chr2-167740993-3	chr2	167740490	167741490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49813.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	48.62	44.7	49.02	74.22	41.99	70.73	65.48	47.75	37.47
Merged-chr2-169756444-1	chr2	169755944	169756944	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	122798.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.72	2.3	1.85	0.67	2.33	1.61	10.56	11.5	1.87
Merged-chr8-66438062-3	chr8	66437556	66438556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	48474.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	55.49	73.73	68.45	78.27	31.72	65.91	66.54	64.56	58.08
Merged-chr10-79767613-3	chr10	79767086	79768086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-634.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	42.33	34.1	29.6	25.64	18.19	50.64	28.52	18.13	26.23
Merged-chr8-23257161-3	chr8	23256727	23257727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042484)	promoter-TSS (NM_001042484)	-147.0	NM_001042484	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	93.24	62.67	100.82	93.11	71.38	104.49	82.38	72.52	64.95
Merged-chrX-102189295-3	chrX	102188791	102189791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009094)	promoter-TSS (NM_009094)	100.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	36.61	31.79	22.2	32.39	36.39	33.76	31.69	49.96	21.23
Merged-chr16-38562831-3	chr16	38562350	38563350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	36.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	217.38	202.75	91.57	189.6	155.35	111.73	168.99	181.29	73.69
Merged-chr19-34550643-3	chr19	34550154	34551154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355262)	promoter-TSS (NM_001355262)	-40.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	27.46	23.5	29.6	24.96	19.59	36.97	46.47	49.52	29.98
Merged-chr10-81292839-3	chr10	81292333	81293333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008844)	promoter-TSS (NM_008844)	-130.0	NM_008844	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	105.83	66.35	73.07	107.95	57.85	65.11	86.61	58.37	63.08
Merged-chr7-43669439-5	chr7	43668940	43669940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2591.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	202.51	199.98	154.47	188.92	134.82	152.72	295.73	285.64	159.88
Merged-chr1-87626578-3	chr1	87626092	87627092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	6280.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	265.43	270.94	142.44	252.34	205.73	162.37	186.94	242.31	133.02
Merged-chr4-126024665-3	chr4	126024174	126025174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	15.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	278.02	324.39	230.31	263.81	246.32	265.25	355.93	489.92	204.22
Merged-chr19-16252905-3	chr19	16252411	16253411	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	62093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	27.46	29.49	31.45	24.96	29.86	30.54	19.01	22.99	41.22
Merged-chr13-5875646-3	chr13	5875165	5876165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14176.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	30.32	26.26	18.5	20.24	20.99	22.51	11.62	11.94	5.62
Merged-chr17-6742317-3	chr17	6741806	6742806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 9 of 12)	intron (NM_009510, intron 9 of 12)	36476.0	NM_183368	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	29.17	20.74	17.57	41.16	17.26	39.39	20.07	29.18	16.24
Merged-chr11-9334994-3	chr11	9334494	9335494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 26 of 61)	intron (NM_178259, intron 26 of 61)	143052.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	78.94	97.23	25.9	90.41	84.9	34.56	105.62	185.71	53.08
Merged-chr8-25044286-3	chr8	25043804	25044804	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 10 of 11)	intron (NM_031257, intron 10 of 11)	-5342.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	29.17	21.66	30.52	35.09	12.6	24.92	44.36	38.91	19.98
Merged-chr1-71102525-3	chr1	71102029	71103029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	CpG	443.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	57.21	76.03	58.27	48.58	58.78	55.46	98.23	129.11	84.31
Merged-chr4-102584849-3	chr4	102584349	102585349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-2709.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	70.36	61.75	53.65	53.3	19.59	61.09	55.98	44.66	42.47
Merged-chr9-121705343-1	chr9	121704843	121705843	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178677)	promoter-TSS (NM_178677)	-314.0	NM_001164562	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	314.63	344.67	243.26	287.43	330.29	229.08	266.16	277.68	146.76
Merged-chr15-76343513-3	chr15	76342971	76343971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025567)	promoter-TSS (NM_025567)	-52.0	NM_025567	66445.0	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	67.5	52.53	54.57	64.77	38.72	60.28	65.48	49.08	41.22
Merged-chr12-25213998-3	chr12	25213509	25214509	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84835.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	311.77	207.81	137.82	331.29	250.52	176.03	298.9	286.08	101.8
Merged-chr3-52070050-3	chr3	52069539	52070539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34967.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	205.94	197.68	132.27	178.13	186.14	114.14	186.94	238.77	68.7
Merged-chr9-65552446-3	chr9	65551979	65552979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153119)	TTS (NM_153119)	27608.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	166.47	119.8	108.22	190.27	109.16	122.98	120.41	122.92	52.46
Merged-chr3-10331301-3	chr3	10330802	10331802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001010834)	TTS (NM_001010834)	137.0	NM_001310433	55980.0	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	33.18	36.86	57.35	58.03	59.25	65.91	50.7	45.99	19.98
Merged-chr3-135720097-3	chr3	135719596	135720596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28549.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.29	7.83	3.7	8.1	5.6	6.43	9.51	7.96	3.75
Merged-chr14-32159340-1	chr14	32158840	32159840	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033988)	promoter-TSS (NM_001033988)	-547.0	NM_001033988	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	64.64	66.35	61.05	60.05	46.65	72.34	54.92	78.26	43.09
Merged-chr4-19537552-3	chr4	19537065	19538065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027769, intron 7 of 15)	intron (NM_027769, intron 7 of 15)	32543.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	32.61	42.39	24.05	52.63	43.39	47.42	43.3	38.91	33.1
Merged-chr7-30559718-3	chr7	30559208	30560208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290569)	promoter-TSS (NM_001290569)	-62.0	NM_001290569	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	45.76	52.53	24.05	28.34	28.46	51.44	51.75	57.04	30.6
Merged-chr19-43689686-3	chr19	43689186	43690186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053103)	promoter-TSS (NM_053103)	-3.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	41.19	42.39	36.07	56.0	35.45	27.33	55.98	41.56	19.98
Merged-chr6-31804589-1	chr6	31804089	31805089	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-138458.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	7.44	5.53	7.4	2.7	8.4	41.8	36.97	5.75	1.25
Merged-chr4-149781193-2	chr4	149780692	149781692	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6925.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	194.5	188.0	103.59	191.62	134.82	127.8	183.78	228.16	102.42
Merged-chr1-88573731-3	chr1	88573239	88574239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	22222.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	28.03	41.01	18.5	19.57	19.13	17.68	22.18	20.78	14.99
Merged-chr5-77460031-3	chr5	77459514	77460514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5474.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	16.02	18.43	7.4	31.04	15.39	8.84	17.96	19.46	9.99
Merged-chr10-57532484-3	chr10	57531983	57532983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019760)	promoter-TSS (NM_019760)	46.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	149.31	193.07	152.62	199.04	266.38	173.62	212.29	193.23	88.68
Merged-chr14-26534956-3	chr14	26534467	26535467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347494)	promoter-TSS (NM_001347494)	-343.0	NM_001310445	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	157.31	176.48	127.64	174.08	190.34	132.63	177.44	154.76	108.67
Merged-chr13-83075854-3	chr13	83075304	83076304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-377471.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	59.49	78.33	50.87	107.95	72.31	68.32	88.72	86.66	34.35
Merged-chr13-91371048-3	chr13	91370534	91371534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	17051.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	76.66	58.98	41.62	92.44	61.58	103.69	49.64	46.43	29.98
Merged-chr9-99378205-3	chr9	99377724	99378724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	-19694.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	24.6	32.25	25.9	32.39	19.13	26.53	29.57	11.94	14.99
Merged-chr2-124610440-3	chr2	124609944	124610944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172537, exon 1 of 17)	5' UTR (NM_172537, exon 1 of 17)	148.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	212.8	182.47	252.51	238.18	196.4	235.51	267.21	263.97	140.52
Merged-chr7-39523936-3	chr7	39523506	39524506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	intron (NM_001004139, intron 1 of 3)	6240.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	38.9	36.4	41.62	39.81	24.72	29.74	65.48	60.13	39.97
Merged-chr12-55836273-3	chr12	55835773	55836773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037756)	promoter-TSS (NM_001037756)	-93.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	48.62	53.45	35.15	49.93	61.58	67.52	42.25	71.63	34.97
Merged-chr14-70774302-3	chr14	70773806	70774806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010071)	promoter-TSS (NM_010071)	-75.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	51.48	69.12	98.05	64.77	55.98	81.99	61.26	66.33	73.69
Merged-chr1-34842948-5	chr1	34842407	34843407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001160235, exon 1 of 8)	5' UTR (NM_001160235, exon 1 of 8)	143.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	339.8	271.86	246.96	365.02	228.59	191.3	380.23	269.72	178.61
Merged-chr7-45866211-3	chr7	45865746	45866746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008172, exon 1 of 12)	exon (NM_008172, exon 1 of 12)	435.0	NM_008172	14814.0	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	14.3	8.29	5.55	16.19	7.46	13.66	15.84	3.1	22.48
Merged-chrX-20923642-3	chrX	20923145	20924145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	56.63	56.68	22.2	50.6	36.39	45.01	55.98	61.02	36.85
Merged-chr16-8666684-3	chr16	8666166	8667166	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	5487.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	68.65	56.68	46.25	82.32	57.38	70.73	87.66	79.59	34.35
Merged-chr19-29251692-3	chr19	29251199	29252199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-104.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	248.27	154.36	236.79	234.8	101.23	180.05	197.51	96.39	116.16
Merged-chr9-61705813-3	chr9	61705321	61706321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	208689.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	30.89	26.26	20.35	60.05	56.91	32.96	44.36	41.12	26.85
Merged-chr7-128523528-3	chr7	128523001	128524001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013863)	promoter-TSS (NM_013863)	-82.0	NM_013863	29810.0	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	188.78	206.43	199.79	200.39	234.19	167.19	181.66	164.93	118.04
Merged-chr7-45095594-3	chr7	45095102	45096102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-3389.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	54.92	58.06	85.1	74.89	65.78	68.32	53.87	60.13	33.72
Merged-chr1-155417467-3	chr1	155416957	155417957	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011273)	promoter-TSS (NM_011273)	-13.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	78.94	60.36	56.42	91.76	47.58	57.07	67.6	57.04	61.2
Merged-chr2-116955094-3	chr2	116954576	116955576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54924.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	13.73	14.28	6.47	23.62	11.66	32.15	17.96	13.27	6.25
Merged-chr12-3667012-3	chr12	3666504	3667504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	L1M4|LINE|L1	94020.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	33.18	40.09	44.4	68.15	67.18	54.66	64.43	52.62	53.08
Merged-chr2-68382579-3	chr2	68382081	68383081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	89400.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	43.48	17.51	25.9	26.99	23.79	32.15	23.24	24.76	24.36
Merged-chr11-120824190-3	chr11	120823706	120824706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	341.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	125.85	56.68	92.5	129.55	64.38	40.19	95.06	84.9	38.72
Merged-chr2-52072814-3	chr2	52072325	52073325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175238)	promoter-TSS (NM_175238)	-12.0	NM_001355415	51869.0	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	22.31	17.97	18.5	24.29	15.86	17.68	27.46	18.13	13.74
Merged-chr17-17402431-3	chr17	17401921	17402921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025681)	promoter-TSS (NM_025681)	-265.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	33.18	26.73	9.25	52.63	34.06	22.51	34.85	25.2	12.49
Merged-chr2-128751138-3	chr2	128750650	128751650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 5 of 18)	(A)n|Simple_repeat|Simple_repeat	52235.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	118.99	118.88	62.9	87.04	69.04	81.18	98.23	138.84	73.69
Merged-chrX-162760289-3	chrX	162759782	162760782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009031)	promoter-TSS (NM_009031)	-90.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	196.21	177.4	166.49	172.05	174.47	143.88	139.42	132.65	93.05
Merged-chr7-101050944-3	chr7	101050450	101051450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38897.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	32.61	23.96	36.07	46.56	27.06	36.17	16.9	12.82	14.36
Merged-chr2-167906964-3	chr2	167906453	167907453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-25374.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	12.59	10.6	9.25	14.17	10.26	20.9	12.67	9.73	6.25
Merged-chr18-53746839-2	chr18	53746336	53747336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2289.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	66.36	70.04	32.37	76.92	49.45	53.85	6.34	2.65	5.62
Merged-chr15-50888613-3	chr15	50888104	50889104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035444)	TTS (NR_035444)	445.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	204.8	198.14	151.69	242.22	257.05	146.29	253.48	235.68	120.53
Merged-chr7-97336837-3	chr7	97336345	97337345	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039039, intron 1 of 1)	MTE2a|LTR|ERVL-MaLR	4522.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	144.73	90.77	83.25	167.33	74.17	65.91	35.91	21.67	18.11
Merged-chr13-41467322-3	chr13	41466814	41467814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20046.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	220.81	214.73	129.49	229.4	174.01	206.57	204.9	217.1	112.42
Merged-chr16-36709674-3	chr16	36709189	36710189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	15711.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	150.45	85.71	42.55	127.52	67.18	50.64	99.28	85.78	58.71
Merged-chr4-130360035-3	chr4	130359519	130360519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153160)	promoter-TSS (NM_153160)	-27.0	NM_153160	619605.0	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	105.26	97.69	129.49	62.07	68.58	111.73	96.11	77.38	69.95
Merged-chr7-83655458-3	chr7	83654939	83655939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360089)	promoter-TSS (NM_001360089)	56.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	133.86	147.91	88.8	103.91	104.96	98.87	83.44	79.59	71.82
Merged-chr8-70765512-3	chr8	70765021	70766021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	1142.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	123.56	111.51	98.97	124.15	82.11	155.13	184.83	151.22	97.43
Merged-chr18-60723377-3	chr18	60722877	60723877	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	4189.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	55.49	30.41	37.92	62.75	31.26	31.35	41.19	37.58	28.73
Merged-chr2-119547097-3	chr2	119546623	119547623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019769)	promoter-TSS (NM_019769)	504.0	NM_172857	241624.0	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	88.1	95.84	77.7	70.17	68.58	80.38	77.1	107.89	58.08
Merged-chr15-98533968-3	chr15	98533463	98534463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	306.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	289.46	213.34	219.21	288.78	213.66	203.36	235.53	259.99	135.52
Merged-chr3-130073243-3	chr3	130072747	130073747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12340.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	13.73	6.45	5.55	6.75	6.06	5.63	6.34	4.42	1.25
Merged-chr5-21017327-3	chr5	21016827	21017827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 4 of 17)	Lx5|LINE|L1	17920.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	14.87	26.26	15.72	28.34	14.0	23.31	16.9	7.07	13.12
Merged-chr17-33909358-3	chr17	33908869	33909869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045146)	promoter-TSS (NR_045146)	-76.0	NR_149750	13163.0	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	351.81	313.79	250.66	307.67	270.11	278.91	254.54	288.74	165.5
Merged-chr1-180829984-3	chr1	180829480	180830480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16375.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	68.07	46.54	26.82	66.12	36.39	52.25	49.64	41.12	28.73
Merged-chr3-14533829-3	chr3	14533335	14534335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028915)	promoter-TSS (NM_028915)	47.0	NM_001163580	71710.0	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	26.31	24.88	23.12	30.36	26.12	40.99	26.4	25.65	21.23
Merged-chr4-43025602-3	chr4	43025126	43026126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020035, exon 1 of 10)	5' UTR (NM_020035, exon 1 of 10)	148.0	NM_020035	56703.0	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	64.64	55.75	51.8	59.38	43.85	62.7	36.97	45.99	39.97
Merged-chr17-63863848-3	chr17	63863325	63864325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037997)	promoter-TSS (NM_001037997)	-156.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	197.36	188.46	160.02	158.56	174.01	146.29	177.44	172.89	114.91
Merged-chr2-104687483-3	chr2	104687004	104688004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	24658.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	5.72	5.53	10.17	8.77	7.0	15.27	9.51	9.29	7.49
Merged-chr15-53139052-3	chr15	53138560	53139560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	207123.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	141.3	122.11	68.45	151.14	104.96	109.32	78.16	86.22	38.1
Merged-chr7-16615339-3	chr7	16614829	16615829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172739)	promoter-TSS (NM_172739)	-336.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	113.84	104.14	130.42	101.88	112.43	135.84	105.62	87.55	81.19
Merged-chrX-36804432-3	chrX	36803925	36804925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8828.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	32.04	32.25	66.6	24.96	25.66	22.51	21.12	20.34	21.86
Merged-chr10-19547032-3	chr10	19546519	19547519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44930.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	66.93	76.95	42.55	82.32	57.38	61.89	68.65	69.42	36.85
Merged-chr11-53818963-3	chr11	53818451	53819451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	40305.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	19.45	22.12	23.12	22.27	17.73	20.09	48.58	43.33	26.23
Merged-chr2-142901559-3	chr2	142901064	142902064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-100.0	NM_001355123	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	70.93	57.14	45.32	116.73	82.57	77.97	115.12	84.9	49.96
Merged-chr6-91685158-3	chr6	91684651	91685651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1084.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	148.16	113.35	95.27	142.37	129.69	150.31	163.71	130.0	100.55
Merged-chr16-10436467-3	chr16	10435963	10436963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	10899.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	58.35	41.93	17.57	40.48	23.79	53.85	33.8	30.07	16.24
Merged-chr5-107359540-3	chr5	107359035	107360035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054054, intron 11 of 18)	intron (NM_054054, intron 11 of 18)	28341.0	NM_054054	114642.0	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	18.88	12.44	7.4	18.22	18.19	21.7	16.9	13.27	18.74
Merged-chr4-138288870-3	chr4	138288366	138289366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010623, intron 8 of 14)	intron (NM_010623, intron 8 of 14)	-15872.0	NM_007838	13200.0	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	6.86	4.15	0.0	6.75	5.6	8.04	6.34	8.4	1.25
Merged-chr1-131690672-3	chr1	131690167	131691167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1972.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	215.66	198.14	114.69	218.61	153.95	162.37	262.99	254.69	172.37
Merged-chr18-64511121-3	chr18	64510634	64511634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 5 of 14)	intron (NM_001142950, intron 5 of 14)	5423.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	85.81	108.28	49.02	74.89	84.44	75.56	72.88	105.24	58.08
Merged-chr14-70950134-3	chr14	70949651	70950651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	60044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	44.05	52.07	64.75	66.8	60.18	69.93	61.26	53.06	50.59
Merged-chr2-25224840-3	chr2	25224335	25225335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146116)	promoter-TSS (NM_146116)	-133.0	NM_146116	227613.0	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	86.95	74.19	52.72	74.22	52.72	45.82	62.31	72.96	73.07
Merged-chr6-116674410-1	chr6	116673910	116674910	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178045)	promoter-TSS (NM_178045)	-574.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	169.9	167.26	117.47	108.63	102.17	147.09	163.71	149.45	135.52
Merged-chr10-80071225-3	chr10	80070713	80071713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359635, intron 5 of 31)	intron (NM_001359635, intron 5 of 31)	4226.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	45.76	65.89	30.52	92.44	59.71	69.13	70.76	81.36	43.09
Merged-chr17-34235152-3	chr17	34234652	34235652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3753.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	11.44	9.68	13.87	3.37	3.73	0.0	16.9	11.05	6.87
Merged-chr19-40589440-3	chr19	40588932	40589932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019698)	promoter-TSS (NM_019698)	-969.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	50.34	35.94	32.37	41.83	31.72	34.56	52.81	60.58	40.59
Merged-chr10-12869399-3	chr10	12868900	12869900	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7665.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	174.48	136.39	115.62	206.46	145.08	118.16	212.29	179.96	113.04
Merged-chr2-125625220-3	chr2	125624717	125625717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081091)	promoter-TSS (NM_001081091)	-104.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	21.17	29.95	18.5	32.39	31.72	28.13	35.91	25.65	18.11
Merged-chr5-143652036-3	chr5	143651564	143652564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163548, intron 1 of 12)	MLT1N2|LTR|ERVL-MaLR	823.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	17.16	14.75	18.5	22.27	11.66	12.86	15.84	13.27	11.24
Merged-chr1-51529866-3	chr1	51529374	51530374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-51475.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	50.91	45.62	34.22	33.06	35.45	43.4	53.87	34.49	29.35
Merged-chr5-66150866-3	chr5	66150383	66151383	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291226)	promoter-TSS (NM_001291226)	95.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	213.38	322.09	208.11	239.52	254.25	202.55	238.7	298.46	201.1
Merged-chr7-7121486-3	chr7	7120985	7121985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172738)	promoter-TSS (NM_172738)	-9.0	NM_172738	232853.0	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	56.63	55.29	72.15	60.05	68.58	86.01	77.1	63.23	36.85
Merged-chr10-128923536-1	chr10	128923036	128924036	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015740)	promoter-TSS (NM_015740)	-12.0	NM_015740	14533.0	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	126.42	172.79	110.07	181.5	195.47	169.6	211.24	195.44	109.92
Merged-chr14-25769163-3	chr14	25768691	25769691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101433)	promoter-TSS (NM_001101433)	-335.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	24.03	15.67	28.67	24.29	13.53	25.72	21.12	13.71	9.37
Merged-chr16-36934958-3	chr16	36934418	36935418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-65.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	258.57	246.06	185.92	251.67	235.59	231.49	294.68	333.39	133.02
Merged-chr10-62543701-3	chr10	62543221	62544221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16276.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	174.48	113.81	64.75	126.17	93.77	116.55	85.55	69.86	75.57
Merged-chr4-122955541-3	chr4	122955032	122956032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029662, intron 3 of 13)	intron (NM_029662, intron 3 of 13)	5656.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	13.73	7.83	14.8	12.14	11.2	9.65	28.52	20.78	11.24
Merged-chr5-142929265-3	chr5	142928761	142929761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22507.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	126.42	100.45	137.82	105.26	76.97	145.49	144.7	120.27	130.53
Merged-chr5-101765075-3	chr5	101764570	101765570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173370)	promoter-TSS (NM_173370)	-60.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	172.76	121.19	93.42	147.76	102.63	77.97	126.74	69.86	55.58
Merged-chr1-182909812-3	chr1	182909313	182910313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-44975.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	36.04	26.26	19.42	39.13	22.86	15.27	15.84	19.9	14.36
Merged-chr1-120080875-3	chr1	120080369	120081369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7089.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	16.02	10.14	7.4	18.89	11.2	17.68	19.01	11.5	13.12
Merged-chr3-28012376-3	chr3	28011867	28012867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	28196.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	37.18	61.75	49.02	52.63	37.32	60.28	76.05	70.75	37.47
Merged-chr11-5065759-3	chr11	5065259	5066259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190406)	promoter-TSS (NM_001190406)	-432.0	NM_001190406	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	24.6	16.13	40.7	24.96	19.13	46.62	24.29	19.9	23.11
Merged-chr1-136137266-3	chr1	136136800	136137800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	intron (NM_001039472, intron 1 of 34)	5910.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	237.97	211.96	154.47	221.98	175.87	196.93	271.44	325.44	157.38
Merged-chr8-84639429-5	chr8	84638923	84639923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007578, exon 47 of 47)	exon (NM_007578, exon 47 of 47)	23429.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	65.79	35.48	39.77	40.48	37.79	47.42	53.87	63.23	29.35
Merged-chr16-35902555-3	chr16	35902054	35903054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31172.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	234.54	243.29	117.47	189.6	173.54	128.61	297.84	328.53	159.88
Merged-chr13-24792557-3	chr13	24792057	24793057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9100.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	117.27	149.75	92.5	133.59	107.3	198.54	142.59	157.85	122.41
Merged-chr17-46646176-3	chr17	46645682	46646682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029091)	promoter-TSS (NM_029091)	-39.0	NM_001316742	27398.0	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	165.32	139.62	114.69	154.51	158.61	136.64	183.78	160.06	78.69
Merged-chr11-62550023-3	chr11	62549530	62550530	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	449.06	435.44	222.91	510.09	455.78	245.16	379.17	508.49	184.86
Merged-chr6-66896430-3	chr6	66895947	66896947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177557)	promoter-TSS (NM_001177557)	50.0	NM_001177556	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	64.07	42.39	49.02	80.29	53.65	29.74	65.48	42.89	20.61
Merged-chr19-7217691-3	chr19	7217195	7218195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-79.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	378.7	365.86	197.94	238.85	277.11	221.04	256.65	304.21	168.62
Merged-chr5-142920925-3	chr5	142920444	142921444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14190.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	141.3	89.39	104.52	114.03	70.44	143.88	164.76	151.66	118.04
Merged-chr9-66919780-3	chr9	66919303	66920303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173413)	promoter-TSS (NM_173413)	-98.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	135.58	94.92	110.99	124.15	93.3	117.35	87.66	83.57	74.94
Merged-chr5-124715289-3	chr5	124714796	124715796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011596, intron 14 of 19)	intron (NM_011596, intron 14 of 19)	-9789.0	NM_019536	56087.0	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	44.62	39.63	55.5	41.83	33.12	78.77	35.91	43.33	34.35
Merged-chr2-29649391-3	chr2	29648890	29649890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	29670.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	105.26	89.85	50.87	102.56	69.51	52.25	82.38	77.82	53.08
Merged-chr15-100041841-3	chr15	100041322	100042322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	3158.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	156.74	166.34	125.79	165.98	122.69	144.68	126.74	168.47	71.82
Merged-chr16-33756625-3	chr16	33756083	33757083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-37454.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	121.28	109.67	54.57	190.95	156.28	93.24	124.63	150.78	59.95
Merged-chr9-44334556-3	chr9	44334042	44335042	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010436)	promoter-TSS (NM_010436)	-173.0	NM_010436	15270.0	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	71.51	60.36	44.4	61.4	44.78	75.56	63.37	51.29	68.07
Merged-chr13-37680526-3	chr13	37680041	37681041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-145497.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	40.04	23.5	16.65	41.16	22.39	28.13	34.85	30.95	32.48
Merged-chr11-79287683-3	chr11	79287192	79288192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32997.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	82.95	77.41	61.97	103.23	75.57	77.16	90.83	103.02	76.82
Merged-chr16-57549208-3	chr16	57548723	57549723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177871)	promoter-TSS (NM_001177871)	-19.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	400.44	379.23	290.44	406.85	309.76	270.88	373.89	349.75	185.48
Merged-chr19-29806010-3	chr19	29805499	29806499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172836)	promoter-TSS (NM_172836)	10.0	NM_172836	240613.0	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	153.88	122.11	172.04	132.92	118.03	138.25	177.44	103.47	71.82
Merged-chr2-26472502-3	chr2	26472000	26473000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 18 of 33)	L4_C_Mam|LINE|RTE-X	-2381.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	83.52	80.64	47.17	120.77	59.71	60.28	54.92	47.75	54.33
Merged-chr3-60580947-3	chr3	60580441	60581441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	79762.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	56.63	30.41	36.07	41.83	47.58	47.42	46.47	49.96	25.61
Merged-chr6-123170396-3	chr6	123169896	123170896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-2627.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	52.06	41.47	23.12	35.76	35.92	47.42	44.36	49.08	53.71
Merged-chr14-73122730-3	chr14	73122256	73123256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19754.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	149.31	160.81	88.8	145.74	130.16	171.21	156.32	168.02	90.56
Merged-chr4-9669230-3	chr4	9668738	9669738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023066)	promoter-TSS (NM_023066)	-76.0	NM_001177849	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	141.87	150.68	151.69	116.73	98.9	86.01	164.76	146.36	76.82
Merged-chrX-133869919-3	chrX	133869358	133870358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18850.0	NM_022322	64103.0	Mm.46221	NM_022322	ENSMUSG00000031250	Tnmd	1110017I01Rik|Bricd4|ChM1L|TeM	tenomodulin	protein-coding	8.58	3.23	7.4	2.7	3.73	0.0	4.22	3.98	3.12
Merged-chr11-23657929-3	chr11	23657431	23658431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-7743.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	65.79	65.43	40.7	66.12	70.44	43.4	95.06	69.42	54.96
Merged-chr11-75137271-3	chr11	75136768	75137768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	30884.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	136.15	88.93	49.95	122.12	98.43	73.14	113.01	121.6	34.35
Merged-chr2-38520108-3	chr2	38519622	38520622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	8246.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	18.88	9.68	9.25	24.29	11.66	11.25	6.34	3.54	8.74
Merged-chr8-123042408-3	chr8	123041915	123042915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037865)	promoter-TSS (NR_037865)	-131.0	NM_001081379	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	267.72	223.48	216.44	289.45	264.98	187.28	254.54	282.99	154.26
Merged-chr10-70195473-3	chr10	70194938	70195938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-9226.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	76.66	91.7	57.35	101.21	74.17	90.02	119.35	114.96	64.95
Merged-chr11-86750233-3	chr11	86749713	86750713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	7354.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	167.04	181.55	72.15	147.76	96.1	99.67	130.97	172.0	94.3
Merged-chr18-66475910-3	chr18	66475408	66476408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17304.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	95.53	69.58	32.37	170.03	139.95	109.32	196.45	214.89	120.53
Merged-chr11-69326191-3	chr11	69325688	69326688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-70.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	184.2	185.7	93.42	166.66	131.09	127.8	153.15	166.25	98.05
Merged-chr16-23982649-3	chr16	23982107	23983107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-1324.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	46.91	40.09	35.15	48.58	34.99	33.76	34.85	41.12	16.24
Merged-chr14-120306403-3	chr14	120305904	120306904	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360376)	promoter-TSS (NM_001360376)	-48.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	15.45	25.8	18.5	18.22	18.19	20.09	32.74	23.43	19.98
Merged-chr10-95548673-3	chr10	95548161	95549161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027722, exon 5 of 5)	3' UTR (NM_027722, exon 5 of 5)	10660.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	210.52	217.95	108.22	219.96	170.28	144.68	194.34	217.1	141.14
Merged-chr17-21566998-3	chr17	21566485	21567485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357347)	promoter-TSS (NM_001357347)	7.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	76.66	58.98	67.52	82.99	52.25	71.54	64.43	120.71	73.07
Merged-chr14-46788335-3	chr14	46787823	46788823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009919)	promoter-TSS (NM_009919)	34.0	NM_001355011	12793.0	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	34.32	37.32	35.15	56.0	24.72	41.8	54.92	19.46	31.85
Merged-chr11-32644227-3	chr11	32643741	32644741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	1686.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	245.41	207.35	90.65	225.36	190.8	130.21	224.97	270.61	100.55
Merged-chr17-23550516-3	chr17	23550019	23551019	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126485)	promoter-TSS (NR_126485)	-280.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	107.55	99.53	84.17	80.97	71.84	78.77	76.05	65.88	56.21
Merged-chr3-84155798-3	chr3	84155301	84156301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029797)	promoter-TSS (NM_029797)	-15.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	8.01	5.53	10.17	20.92	7.93	0.0	9.51	5.31	5.0
Merged-chr11-70084788-3	chr11	70084298	70085298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7846.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	24.03	20.74	20.35	28.34	15.86	31.35	15.84	18.13	19.36
Merged-chr6-33867073-2	chr6	33866572	33867572	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-162376.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	14.3	9.68	8.32	14.17	23.79	24.11	26.4	20.78	16.86
Merged-chr8-122444541-3	chr8	122444036	122445036	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015497)	TTS (NR_015497)	880.0	NR_045696	100689703.0	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	49.77	49.3	65.67	39.81	42.92	60.28	83.44	70.75	53.71
Merged-chr10-37257725-3	chr10	37257217	37258217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-118791.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	54.35	52.99	39.77	48.58	28.46	33.76	31.69	36.7	38.1
Merged-chr11-23306468-3	chr11	23305983	23306983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190401)	promoter-TSS (NM_001190401)	-412.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	315.77	292.6	227.54	319.14	249.58	167.19	272.5	183.5	148.01
Merged-chr2-130664338-3	chr2	130663931	130664931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029832, intron 1 of 8)	CpG	214.0	NM_029832	77006.0	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	276.87	255.74	160.94	258.42	290.17	206.57	240.81	276.35	114.29
Merged-chr7-135914441-3	chr7	135913943	135914943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198064.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	16.59	33.64	37.92	24.96	27.52	51.44	25.35	30.51	22.48
Merged-chr15-28374613-3	chr15	28374122	28375122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 52 of 78)	intron (NM_133365, intron 52 of 78)	170856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	45.19	44.24	26.82	42.51	40.59	41.8	57.03	55.27	24.98
Merged-chr16-8829887-3	chr16	8829390	8830390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081400)	promoter-TSS (NM_001081400)	-210.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	334.65	345.13	337.61	339.38	322.36	267.66	316.86	322.78	246.06
Merged-chr18-80390879-3	chr18	80390380	80391380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26626.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	41.76	17.97	40.7	24.96	22.86	19.29	19.01	15.48	13.74
Merged-chr4-141723445-3	chr4	141722916	141723916	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017966)	promoter-TSS (NM_001017966)	3.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	166.47	129.94	105.44	174.75	118.96	115.75	153.15	137.07	108.67
Merged-chr10-77619819-3	chr10	77619319	77620319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2502.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	106.97	151.6	104.52	132.24	103.56	147.09	122.52	187.92	93.68
Merged-chr5-53594168-3	chr5	53593676	53594676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	3690.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	53.77	55.75	8.32	41.83	27.06	30.54	42.25	58.37	29.98
Merged-chr14-102866646-3	chr14	102866135	102867135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	115997.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	18.31	17.05	3.7	31.71	13.53	14.47	17.96	19.9	19.36
Merged-chr18-9504323-3	chr18	9503818	9504818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54164.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	67.5	45.16	9.25	118.08	90.5	33.76	94.0	66.77	8.74
Merged-chr2-38536533-3	chr2	38536029	38537029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24653.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	18.31	10.14	5.55	14.84	14.46	4.02	6.34	3.54	2.5
Merged-chr1-161077457-1	chr1	161076957	161077957	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131030, intron 2 of 4)	ORR1A3|LTR|ERVL-MaLR	6690.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	24.6	28.11	47.17	19.57	12.6	23.31	45.42	35.37	23.73
Merged-chr6-15463599-3	chr6	15463094	15464094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-257067.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	13.16	10.14	3.7	9.45	11.66	14.47	16.9	8.4	7.49
Merged-chr2-117108297-3	chr2	117107799	117108799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12772.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	86.95	76.95	70.3	119.43	91.44	86.81	80.27	77.38	65.58
Merged-chr17-80207374-3	chr17	80206864	80207864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-59.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	166.47	158.05	131.34	178.13	132.02	166.38	147.87	140.17	114.29
Merged-chr11-75190526-3	chr11	75190033	75191033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144491)	promoter-TSS (NM_144491)	-50.0	NM_144491	116905.0	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	12.01	5.99	14.8	24.96	13.06	7.23	21.12	6.63	11.24
Merged-chr8-71371680-3	chr8	71371179	71372179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029865, exon 1 of 4)	exon (NM_029865, exon 1 of 4)	381.0	NM_001293800	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	143.59	132.71	71.22	118.75	110.56	102.88	122.52	118.06	71.2
Merged-chr4-46138665-3	chr4	46138174	46139174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173033)	promoter-TSS (NM_173033)	35.0	NM_001355376	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	236.83	223.94	207.19	168.68	245.38	221.85	245.04	195.44	124.91
Merged-chr5-62858658-3	chr5	62858155	62859155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	44832.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	110.41	164.96	82.32	130.9	127.82	123.78	88.72	122.48	69.32
Merged-chr5-38220463-3	chr5	38219975	38220975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025281)	promoter-TSS (NM_025281)	-7.0	NM_025281	17089.0	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	44.62	43.31	25.9	43.86	40.12	61.89	62.31	38.91	36.22
Merged-chr17-87571804-3	chr17	87571302	87572302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64177.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	10.3	3.69	1.85	4.72	3.73	4.02	3.17	1.33	1.25
Merged-chrM-4084-2	chrM	3582	4582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											304.9	245.14	34.22	158.56	55.05	24.92	127.8	41.12	34.97
Merged-chr3-98031329-3	chr3	98030832	98031832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	17794.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	36.04	41.01	26.82	49.93	27.06	53.85	38.02	36.26	16.86
Merged-chr3-14869979-3	chr3	14869468	14870468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007606, intron 5 of 6)	intron (NM_007606, intron 5 of 6)	6430.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	74.94	69.58	20.35	74.22	51.32	40.19	46.47	35.37	20.61
Merged-chr3-116423617-3	chr3	116423110	116424110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001080818, exon 1 of 16)	5' UTR (NM_001080818, exon 1 of 16)	422.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	64.64	64.97	50.87	85.01	56.91	73.95	99.28	73.4	63.08
Merged-chr4-133690464-3	chr4	133689949	133690949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 11 of 19)	intron (NM_001080819, intron 11 of 19)	-17283.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	101.83	70.96	58.27	75.57	71.38	46.62	84.49	111.43	58.71
Merged-chr19-5724746-3	chr19	5724226	5725226	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1591.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	149.31	110.59	109.14	105.93	87.7	100.47	136.25	140.17	101.17
Merged-chr1-191275815-3	chr1	191275304	191276304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	42314.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	44.62	15.21	5.55	65.45	25.19	15.27	23.24	7.07	8.74
Merged-chr13-60620775-3	chr13	60620272	60621272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	18561.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	144.16	172.33	123.94	209.84	168.88	173.62	144.7	159.62	84.94
Merged-chr16-20401802-3	chr16	20401283	20402283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 6 of 6)	intron (NM_176839, intron 6 of 6)	24611.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	25.17	21.66	37.92	12.14	14.93	28.94	21.12	19.46	19.36
Merged-chr16-22547805-3	chr16	22547319	22548319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-15635.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	116.13	100.91	45.32	141.02	88.17	81.99	141.53	146.36	31.23
Merged-chr9-103241806-3	chr9	103241339	103242339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11553.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	21.74	17.51	37.0	14.84	9.33	25.72	16.9	12.38	23.11
Merged-chr5-129020068-3	chr5	129019551	129020551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009391)	promoter-TSS (NM_009391)	-105.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	112.12	97.23	131.34	114.03	94.23	133.43	145.75	73.4	73.07
Merged-chr10-87830195-3	chr10	87829723	87830723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	-28042.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	96.68	90.77	89.72	150.46	110.1	104.49	119.35	137.96	73.69
Merged-chrX-169124009-3	chrX	169123501	169124501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	11123.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	85.24	64.05	24.97	80.97	68.58	51.44	59.15	67.21	32.48
Merged-chr1-72413465-3	chr1	72412978	72413978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106057.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	37.18	44.24	9.25	54.65	41.05	22.51	72.88	58.37	27.48
Merged-chr14-14640729-2	chr14	14640221	14641221	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62304.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	22.88	29.03	22.2	22.27	16.79	36.97	19.01	25.2	26.23
Merged-chr9-121332205-3	chr9	121331709	121332709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	34707.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	80.09	36.86	21.27	59.38	16.33	20.9	46.47	15.03	19.36
Merged-chr11-68864890-3	chr11	68864375	68865375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11744.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	190.49	188.0	111.92	168.68	139.49	98.87	140.47	169.35	95.55
Merged-chr11-64978956-3	chr11	64978460	64979460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023479)	promoter-TSS (NM_023479)	-75.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	45.19	56.22	52.72	37.78	40.59	57.87	54.92	42.45	34.35
Merged-chr11-51833637-3	chr11	51833137	51834137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 5 of 12)	MIRb|SINE|MIR	23844.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	37.76	29.95	37.92	24.29	18.66	28.13	35.91	28.74	31.85
Merged-chr10-34206599-3	chr10	34206101	34207101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	950.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	121.28	155.28	125.79	169.35	152.08	160.76	153.15	149.01	101.8
Merged-chr17-73928190-3	chr17	73927676	73928676	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	B1F1|SINE|Alu	22020.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	132.72	116.12	62.9	169.35	138.09	102.08	125.69	126.9	56.83
Merged-chr4-53231197-3	chr4	53230698	53231698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14998.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	54.92	25.34	18.5	71.52	34.99	17.68	32.74	21.67	14.99
Merged-chr16-16526895-3	chr16	16526414	16527414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	497.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	398.72	440.51	187.77	391.34	417.53	254.0	364.38	432.88	159.88
Merged-chr18-68059232-3	chr18	68058743	68059743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	126070.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	66.36	49.3	18.5	78.94	52.72	28.94	26.4	20.78	23.73
Merged-chr18-36328823-3	chr18	36328326	36329326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19798.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	30.32	23.5	11.1	31.71	23.33	40.99	38.02	29.18	21.23
Merged-chr2-166204316-3	chr2	166203791	166204791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48608.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	44.05	29.03	16.65	57.35	20.99	20.9	62.31	42.45	28.73
Merged-chr4-123952220-3	chr4	123951718	123952718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34785.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	121.85	75.11	81.4	135.62	102.17	111.73	116.18	80.47	61.2
Merged-chr8-90876539-3	chr8	90876033	90877033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	47698.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	201.93	160.81	192.39	209.16	141.35	188.89	129.91	146.36	88.68
Merged-chr12-91591016-3	chr12	91590527	91591527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175335)	promoter-TSS (NM_175335)	-540.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	255.71	307.34	197.94	277.31	315.36	245.96	258.77	373.19	174.24
Merged-chr4-134704391-3	chr4	134703892	134704892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-102.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	74.94	59.9	55.5	104.58	75.57	81.99	81.33	64.56	53.71
Merged-chr6-32460594-3	chr6	32460082	32461082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-50559.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	17.16	18.89	9.25	33.74	34.06	27.33	21.12	12.82	18.74
Merged-chr12-111160162-3	chr12	111159656	111160656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130987, exon 4 of 4)	non-coding (NR_130987, exon 4 of 4)	-6214.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	101.83	71.88	37.0	117.4	64.84	61.89	77.1	64.56	30.6
Merged-chr8-105825721-3	chr8	105825228	105826228	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145824, intron 2 of 13)	intron (NM_145824, intron 2 of 13)	1622.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	35.47	32.72	11.1	49.93	23.79	26.53	32.74	30.51	16.24
Merged-chr15-58145832-2	chr15	58145342	58146342	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	(TCCCC)n|Simple_repeat|Simple_repeat	4476.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	34.32	25.8	0.0	16.87	8.4	8.84	33.8	27.86	20.61
Merged-chr2-18676910-5	chr2	18676417	18677417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007552)	promoter-TSS (NM_007552)	-101.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	157.31	81.56	120.24	157.21	63.45	66.71	155.26	57.04	81.81
Merged-chr9-122117291-3	chr9	122116777	122117777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164572)	promoter-TSS (NM_001164572)	11.0	NM_001357774	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	155.03	94.0	92.5	137.64	78.37	92.44	124.63	55.71	54.33
Merged-chr4-133465314-3	chr4	133464811	133465811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-14822.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	145.3	134.55	76.77	171.38	164.68	148.7	28.52	12.38	8.74
Merged-chr17-84188054-3	chr17	84187554	84188554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001806)	promoter-TSS (NM_001001806)	-107.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	264.86	218.87	254.36	221.98	192.2	198.54	171.1	210.47	179.24
Merged-chr4-53353655-3	chr4	53353150	53354150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83418.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	127.57	125.79	61.05	127.52	89.57	81.99	96.11	96.83	56.21
Merged-chr15-77875003-3	chr15	77874505	77875505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32830.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	15.45	8.29	14.8	16.87	8.86	4.82	15.84	14.59	11.87
Merged-chr4-152283378-3	chr4	152282872	152283872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178406, exon 6 of 6)	exon (NM_178406, exon 6 of 6)	8290.0	NM_008237	15207.0	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hes family bHLH transcription factor 3	protein-coding	5.15	3.23	0.0	2.02	0.47	1.61	1.06	0.88	3.75
Merged-chr7-105400210-3	chr7	105399710	105400710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242363)	promoter-TSS (NM_001242363)	-156.0	NM_001242363	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	201.93	180.17	200.71	157.21	127.82	122.98	174.27	139.72	119.91
Merged-chr3-87017917-3	chr3	87017414	87018414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18574.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	111.55	120.73	87.87	74.22	59.71	61.09	104.56	97.28	55.58
Merged-chr11-117809680-3	chr11	117809193	117810193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009304)	promoter-TSS (NM_009304)	26.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	104.69	130.4	183.14	129.55	113.83	135.84	136.25	110.1	108.04
Merged-chr11-95259288-3	chr11	95258791	95259791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2238.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	29.75	18.43	9.25	44.53	37.79	56.27	38.02	25.65	13.12
Merged-chr10-62501123-3	chr10	62500615	62501615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	6642.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	129.28	109.67	63.82	126.85	88.17	88.42	124.63	162.28	75.57
Merged-chr1-171123096-3	chr1	171122621	171123621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081275, exon 2 of 6)	5' UTR (NM_001081275, exon 2 of 6)	1460.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	193.35	146.53	60.12	209.16	126.89	107.71	117.24	100.81	46.22
Merged-chr16-36828370-3	chr16	36827873	36828873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113401)	promoter-TSS (NM_001113401)	-27.0	NM_177128	320299.0	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	24.6	16.59	12.02	49.25	35.45	25.72	34.85	32.72	8.12
Merged-chr18-4314096-3	chr18	4313602	4314602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38851.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	220.81	201.82	113.77	261.12	248.18	208.98	213.35	241.87	104.92
Merged-chr8-46931404-3	chr8	46930906	46931906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3G|LINE|L1	-55481.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	177.34	196.29	119.32	149.11	141.35	152.72	128.85	185.71	97.43
Merged-chrUn_JH584304-39324-1	chrUn_JH584304	38824	39824	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20365.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	90.83	43.77	0.0
Merged-chr6-50305123-3	chr6	50304614	50305614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	intron (NM_027881, intron 18 of 21)	-43345.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	66.93	120.73	55.5	76.24	83.51	80.38	99.28	111.43	86.81
Merged-chr14-26636889-3	chr14	26636419	26637419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1215.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	179.05	192.61	88.8	159.91	127.36	108.51	175.33	170.68	119.91
Merged-chr7-141456089-3	chr7	141455570	141456570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025802, intron 1 of 7)	intron (NM_025802, intron 1 of 7)	882.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	178.48	175.56	168.34	191.62	157.68	175.23	180.61	266.18	126.78
Merged-chr3-96697110-3	chr3	96696608	96697608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018812)	promoter-TSS (NM_018812)	32.0	NM_018812	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	30.32	33.64	64.75	33.74	28.46	46.62	47.53	25.2	21.23
Merged-chr2-25365646-3	chr2	25365150	25366150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	13.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	100.11	74.19	68.45	186.9	211.79	141.47	124.63	136.63	83.06
Merged-chr2-180274113-2	chr2	180273600	180274600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-635.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	54.92	62.21	39.77	62.07	53.65	54.66	67.6	50.41	34.97
Merged-chr10-117721628-3	chr10	117721107	117722107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10849.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	18.31	10.14	8.32	26.31	14.46	17.68	16.9	16.8	11.24
Merged-chr6-31169555-3	chr6	31169044	31170044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48930.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	137.86	79.25	40.7	87.71	41.99	43.4	101.39	103.91	29.35
Merged-chr3-89418436-3	chr3	89417942	89418942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	-109.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	112.69	85.25	95.27	107.95	80.71	111.73	142.59	100.81	42.47
Merged-chr12-103341370-3	chr12	103340851	103341851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	14650.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	239.69	192.15	138.74	186.22	100.77	62.7	212.29	238.77	73.07
Merged-chr17-50190531-3	chr17	50190031	50191031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181397)	promoter-TSS (NM_181397)	-34.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	77.8	60.36	41.62	99.86	66.24	50.64	125.69	62.79	37.47
Merged-chr8-128491388-3	chr8	128490883	128491883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	132142.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	57.78	106.9	48.1	65.45	73.71	88.42	80.27	84.9	50.59
Merged-chr14-47472545-3	chr14	47472035	47473035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030236)	promoter-TSS (NM_030236)	-26.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	382.13	248.36	246.04	377.17	256.58	207.38	276.72	179.08	149.89
Merged-chrX-106135066-3	chrX	106134569	106135569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	-8206.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	134.43	151.14	118.39	128.87	122.23	114.94	126.74	133.98	71.2
Merged-chr3-142395705-3	chr3	142395213	142396213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190855)	promoter-TSS (NM_001190855)	-17.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	282.59	230.85	173.89	289.45	189.4	189.69	221.8	160.51	148.64
Merged-chr2-160667498-3	chr2	160667018	160668018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	MLT1F|LTR|ERVL-MaLR	21621.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	30.32	22.58	33.3	36.43	37.32	33.76	38.02	38.03	23.11
Merged-chr6-113326800-3	chr6	113326294	113327294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149720)	promoter-TSS (NR_149720)	-182.0	NR_149720	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	89.24	61.28	93.42	93.11	83.51	81.99	86.61	90.2	72.45
Merged-chr1-36068296-3	chr1	36067837	36068837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015818)	promoter-TSS (NM_015818)	-63.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	109.83	79.72	83.25	117.4	84.44	108.51	90.83	83.57	57.46
Merged-chr1-51520476-3	chr1	51519969	51520969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-42070.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	60.07	88.93	68.45	55.33	52.25	77.97	85.55	80.47	69.32
Merged-chr10-128780395-3	chr10	128779948	128780948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10462.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	233.4	246.98	119.32	215.23	219.26	139.06	189.06	186.15	95.55
Merged-chr9-24542096-3	chr9	24541595	24542595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-38955.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	17.73	55.75	5.55	13.49	52.72	4.02	13.73	38.03	2.5
Merged-chr13-58516523-3	chr13	58516009	58517009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	94368.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	31.46	29.03	3.7	25.64	11.66	8.04	25.35	19.9	12.49
Merged-chr16-24199966-3	chr16	24199459	24200459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117269.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	9.15	2.76	5.55	6.07	6.06	7.23	5.28	1.33	1.25
Merged-chr11-103412723-3	chr11	103412161	103413161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	3.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	372.41	325.31	235.86	336.01	322.82	239.53	366.5	397.07	174.87
Merged-chr12-102878523-3	chr12	102878023	102879023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172806)	promoter-TSS (NM_172806)	-117.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	197.93	169.57	142.44	205.79	153.48	152.72	207.01	124.69	104.92
Merged-chr16-90677436-3	chr16	90676993	90677993	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49878.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	46.91	44.7	32.37	67.47	57.38	69.13	38.02	34.05	20.61
Merged-chr11-115403897-3	chr11	115403391	115404391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347645, exon 1 of 6)	exon (NM_001347645, exon 1 of 6)	139.0	NR_154991	68572.0	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	76.66	54.37	29.6	41.16	46.18	31.35	40.14	27.86	14.99
Merged-chr19-16086751-3	chr19	16086244	16087244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-46087.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	14.3	16.59	16.65	14.84	9.8	5.63	20.07	20.34	17.49
Merged-chr19-12461093-3	chr19	12460600	12461600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010821, exon 2 of 2)	5' UTR (NM_010821, exon 2 of 2)	321.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	279.16	204.59	137.82	246.27	157.21	208.98	296.79	306.42	158.01
Merged-chr9-86467183-3	chr9	86466673	86467673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177208)	promoter-TSS (NM_177208)	19.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	132.14	81.56	67.52	92.44	76.04	55.46	119.35	76.05	39.97
Merged-chr16-18626661-3	chr16	18626147	18627147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213614, intron 2 of 11)	CpG	3291.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.58	2.76	0.92	10.12	1.87	0.8	2.11	1.33	5.62
Merged-chr13-59870312-3	chr13	59869800	59870800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-47153.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	65.79	71.88	61.05	56.68	41.99	61.09	66.54	75.17	77.44
Merged-chr6-124965447-4	chr6	124964936	124965936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164089, exon 1 of 8)	5' UTR (NM_001164089, exon 1 of 8)	102.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	298.61	230.85	186.84	350.18	306.5	220.24	350.65	297.58	155.51
Merged-chr17-35241861-4	chr17	35241424	35242424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252457)	promoter-TSS (NM_001252457)	178.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	490.82	447.88	292.29	483.1	494.03	334.38	386.56	483.73	261.68
Merged-chr19-10023842-3	chr19	10023328	10024328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5634.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	58.35	76.49	90.65	39.81	55.98	67.52	71.82	85.34	47.46
Merged-chr3-142590620-3	chr3	142590059	142591059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4288.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	85.24	110.13	77.7	84.34	56.91	65.91	123.57	107.89	73.69
Merged-chr1-144319602-3	chr1	144319122	144320122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70518.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	202.51	182.01	143.37	304.97	212.73	175.23	192.23	253.8	123.66
Merged-chr2-3961597-3	chr2	3961091	3962091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-56092.0	NM_001347086	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	14.87	14.28	29.6	12.82	10.26	26.53	14.79	16.36	24.98
Merged-chr2-102877707-3	chr2	102877199	102878199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23966.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	54.92	65.89	28.67	66.8	45.25	68.32	43.3	68.09	57.46
Merged-chr2-45113653-3	chr2	45113104	45114104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355289)	promoter-TSS (NM_001355289)	-325.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	94.39	98.15	71.22	101.21	57.85	116.55	113.01	117.62	66.82
Merged-chr5-117891769-3	chr5	117891291	117892291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24952.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	85.24	75.11	63.82	91.76	47.58	118.96	88.72	62.35	57.46
Merged-chr13-60892470-3	chr13	60891981	60892981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	4966.0	NM_007797	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	98.97	133.17	96.2	118.08	110.1	127.0	140.47	179.96	78.69
Merged-chr2-34754308-3	chr2	34753813	34754813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151469, exon 2 of 27)	non-coding (NR_151469, exon 2 of 27)	919.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	197.93	123.49	124.87	197.02	116.63	133.43	176.38	118.5	67.45
Merged-chr9-64089253-3	chr9	64088755	64089755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8494.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	94.39	79.25	86.95	128.2	97.97	119.76	121.46	89.76	50.59
Merged-chr12-95749295-1	chr12	95748795	95749795	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	57069.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	20.02	19.35	23.12	14.17	19.59	21.7	34.85	13.71	16.86
Merged-chr17-56627272-1	chr17	56626772	56627772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028782)	promoter-TSS (NM_028782)	225.0	NM_001357897	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	60.07	40.55	39.77	64.1	56.45	51.44	54.92	21.22	14.99
Merged-chr5-120812627-3	chr5	120812134	120813134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003507)	promoter-TSS (NR_003507)	-1.0	NR_003507	23961.0	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	54.35	61.28	29.6	54.65	60.18	65.11	69.71	80.03	29.35
Merged-chr13-34652637-3	chr13	34652137	34653137	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	44.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	262.0	252.97	234.94	224.01	200.13	240.33	188.0	147.24	104.92
Merged-chr10-88336563-3	chr10	88336074	88337074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	MER31A|LTR|ERV1	20501.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	167.61	125.79	146.14	149.79	76.97	159.95	190.11	198.09	111.79
Merged-chr5-120116452-3	chr5	120115966	120116966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028762)	promoter-TSS (NM_028762)	-47.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	52.63	55.75	35.15	39.13	46.65	64.3	63.37	45.99	33.1
Merged-chr1-180725982-3	chr1	180725494	180726494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-49.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	171.62	126.72	134.12	157.21	123.16	176.03	165.82	112.75	96.8
Merged-chr2-153198719-3	chr2	153198218	153199218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 13 of 17)	intron (NM_133847, intron 13 of 17)	26723.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	311.2	253.43	166.49	298.9	207.6	143.07	193.28	244.08	133.65
Merged-chr11-77442867-3	chr11	77442405	77443405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-21008.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	99.54	63.59	37.92	93.79	57.85	56.27	78.16	80.03	34.35
Merged-chr9-32475196-3	chr9	32474699	32475699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	66253.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	83.52	91.24	54.57	86.36	54.11	120.57	55.98	69.42	59.95
Merged-chr7-141048422-3	chr7	141047925	141048925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12849.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	33.18	26.26	20.35	33.74	21.46	42.6	26.4	15.03	29.98
Merged-chr1-172312343-3	chr1	172311848	172312848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080419)	promoter-TSS (NM_080419)	-19.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	242.55	216.11	217.36	276.63	181.47	223.45	202.79	189.25	101.17
Merged-chr12-31949474-3	chr12	31948921	31949921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	CpG	824.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	411.88	266.79	275.64	333.31	233.25	240.33	332.7	196.32	181.11
Merged-chr1-36691462-3	chr1	36690956	36691956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009942)	promoter-TSS (NM_009942)	-31.0	NM_009942	12859.0	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	73.22	68.2	98.97	76.24	58.78	69.13	91.89	60.58	50.59
Merged-chr11-113101825-2	chr11	113101337	113102337	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100001.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.72	1.38	0.0	14.17	22.86	15.27	60.2	60.58	49.34
Merged-chr15-81872396-3	chr15	81871924	81872924	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-39.0	NM_080633	11429.0	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	311.2	250.21	202.56	245.6	205.73	229.08	320.02	334.28	160.5
Merged-chr8-60983822-3	chr8	60983325	60984325	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007711)	promoter-TSS (NM_007711)	-514.0	NM_173874	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	144.73	141.92	110.07	197.69	178.21	159.15	155.26	171.56	90.56
Merged-chr9-103108599-1	chr9	103108099	103109099	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3475.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	2.86	0.92	0.92	0.0	1.4	7.23	84.49	98.16	84.94
Merged-chr2-158146390-3	chr2	158145886	158146886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009373)	promoter-TSS (NM_009373)	6.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	222.53	210.12	148.92	265.84	231.85	193.71	267.21	282.1	75.57
Merged-chr13-5615064-3	chr13	5614572	5615572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243020.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	109.26	103.22	81.4	147.09	115.69	100.47	74.99	74.73	59.95
Merged-chr13-34163019-3	chr13	34162513	34163513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101430)	promoter-TSS (NM_001101430)	49.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	217.95	176.48	143.37	189.6	171.68	151.92	211.24	174.66	93.68
Merged-chr3-40531043-3	chr3	40530527	40531527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8115.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	30.32	32.25	22.2	33.74	27.52	24.11	52.81	53.5	17.49
Merged-chrX-155246763-3	chrX	155246257	155247257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15686.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	82.95	79.72	52.72	73.54	72.78	50.64	72.88	123.81	49.96
Merged-chr3-31061470-3	chr3	31060975	31061975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22509.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	334.08	340.06	209.96	318.47	277.57	219.43	356.99	424.48	212.34
Merged-chr19-6277847-3	chr19	6277331	6278331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	935.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	348.38	246.98	140.59	352.2	242.58	228.28	257.71	245.84	153.63
Merged-chr8-70769552-3	chr8	70769053	70770053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008841, intron 13 of 15)	CpG	-2890.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	137.29	66.81	67.52	149.79	73.71	77.16	103.51	127.79	76.82
Merged-chr7-89445347-1	chr7	89444847	89445847	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	19041.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	2.29	2.3	5.55	7.42	2.8	2.41	1.06	4.42	7.49
Merged-chr14-102907707-3	chr14	102907209	102908209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	74923.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	72.08	97.69	107.29	71.52	66.71	105.3	88.72	90.64	76.82
Merged-chr8-25980389-3	chr8	25979851	25980851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029037)	TTS (NM_029037)	-3607.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	127.0	112.43	98.97	151.81	101.23	130.21	152.09	145.47	116.79
Merged-chr12-87147126-2	chr12	87146634	87147634	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010363)	promoter-TSS (NM_010363)	-31.0	NM_001252555	14874.0	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	46.34	62.21	57.35	67.47	73.24	86.01	63.37	59.25	48.09
Merged-chr17-10320263-1	chr17	10319763	10320763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	344.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	333.51	330.38	284.89	314.42	266.84	272.48	301.01	322.34	206.72
Merged-chr9-44767802-3	chr9	44767288	44768288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145985)	promoter-TSS (NM_145985)	20.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	286.6	331.76	223.84	317.12	297.63	272.48	285.17	228.6	205.47
Merged-chr12-71015362-1	chr12	71014862	71015862	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	461.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	244.84	201.36	151.69	224.68	201.07	134.23	198.56	196.32	154.88
Merged-chr2-3658036-3	chr2	3657541	3658541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55417.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	88.67	75.11	63.82	97.83	34.06	88.42	74.99	73.84	59.95
Merged-chr4-153817472-1	chr4	153816972	153817972	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133004.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	4.58	4.15	0.0	15.52	1.4	6.43	3.17	1.33	1.25
Merged-chr3-94838266-3	chr3	94837765	94838765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	CpG	698.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	119.56	158.05	146.14	97.16	100.77	135.84	160.54	159.18	119.28
Merged-chr9-35634039-3	chr9	35633560	35634560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14142.0	NM_001167592	100312956.0	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	11.44	12.9	12.02	8.1	4.2	8.84	30.63	17.24	20.61
Merged-chr7-25787116-3	chr7	25786612	25787612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 2 of 19)	MIR|SINE|MIR	1621.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	119.56	108.28	81.4	154.51	161.41	127.8	230.25	275.91	62.45
Merged-chr1-55237157-3	chr1	55236673	55237673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175439)	promoter-TSS (NM_175439)	-4.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	29.17	21.66	7.4	53.3	49.45	44.21	34.85	32.28	16.24
Merged-chr14-121997021-3	chr14	121996526	121997526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 7 of 8)	intron (NM_026861, intron 7 of 8)	-31833.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	56.63	42.39	29.6	91.09	63.45	61.09	72.88	61.46	44.34
Merged-chr3-20027527-3	chr3	20027023	20028023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	7787.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	108.12	118.42	79.55	87.71	64.38	107.71	77.1	104.35	63.7
Merged-chr10-78015656-3	chr10	78015144	78016144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5837.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	13.16	11.06	3.7	11.47	12.6	16.88	22.18	12.38	17.49
Merged-chr7-105399162-3	chr7	105398667	105399667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242363, intron 1 of 12)	intron (NM_001242363, intron 1 of 12)	887.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	147.59	172.79	87.87	132.24	99.83	91.63	111.96	134.86	104.3
Merged-chr16-84621553-3	chr16	84621027	84622027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58262.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	78.37	87.09	66.6	66.8	63.45	34.56	81.33	92.86	68.7
Merged-chr10-117861072-3	chr10	117860572	117861572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	442.77	389.36	145.22	408.2	347.08	210.59	274.61	454.55	165.5
Merged-chr18-60795307-3	chr18	60794808	60795808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8541.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	17.16	19.81	21.27	10.8	7.46	4.82	16.9	13.71	6.87
Merged-chr7-129574679-3	chr7	129574189	129575189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17174.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	38.9	64.97	55.5	46.56	62.05	75.56	54.92	69.86	48.09
Merged-chr17-8902196-3	chr17	8901695	8902695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	ORR1D2|LTR|ERVL-MaLR	52210.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	58.35	73.73	48.1	73.54	54.58	60.28	66.54	61.46	29.98
Merged-chr13-60644793-3	chr13	60644291	60645291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	42580.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	61.78	71.88	29.6	72.19	49.92	61.89	21.12	24.76	23.11
Merged-chr19-36932819-3	chr19	36932318	36933318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	6739.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	44.05	73.26	49.02	43.86	41.99	56.27	119.35	134.42	60.58
Merged-chr9-94665417-3	chr9	94664923	94665923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4469.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	31.46	27.65	32.37	26.99	27.06	34.56	19.01	32.72	24.36
Merged-chr2-181520406-3	chr2	181519908	181520908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016775)	promoter-TSS (NM_016775)	-77.0	NM_016775	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	307.19	334.99	224.76	269.89	329.82	272.48	277.78	324.55	169.25
Merged-chr1-135726131-3	chr1	135725633	135726633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	-3034.0	NR_153810	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	56.06	41.93	27.75	51.95	24.26	24.11	57.03	56.16	23.73
Merged-chr11-20741833-5	chr11	20741281	20742281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-225.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	424.46	392.13	295.06	355.58	265.91	263.64	366.5	421.39	264.18
Merged-chr8-119840600-3	chr8	119840094	119841094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-15.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	164.75	128.1	98.97	136.97	126.89	121.37	168.99	154.32	95.55
Merged-chr11-70497891-3	chr11	70497382	70498382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7392.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	176.19	158.51	94.35	187.57	172.61	152.72	192.23	204.28	123.03
Merged-chr3-138489553-3	chr3	138489068	138490068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175224)	promoter-TSS (NM_175224)	-186.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	88.1	84.78	74.92	99.86	93.77	92.44	138.36	79.15	72.45
Merged-chr5-36562975-1	chr5	36562475	36563475	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	19422.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	199.65	169.57	136.89	143.04	137.15	122.98	137.3	157.85	101.17
Merged-chr17-33951493-3	chr17	33950961	33951961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019420)	promoter-TSS (NM_019420)	27.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	80.09	61.75	89.72	99.18	69.51	101.28	43.3	55.27	61.83
Merged-chr5-135990793-3	chr5	135990280	135991280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4020.0	NM_023742	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	12.01	18.89	16.65	14.17	13.06	18.49	13.73	4.86	12.49
Merged-chr9-26999627-3	chr9	26999145	27000145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144543)	promoter-TSS (NM_144543)	-32.0	NM_144543	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	53.77	97.69	64.75	62.07	85.84	79.58	86.61	74.73	41.84
Merged-chr15-76380402-3	chr15	76379909	76380909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175457)	promoter-TSS (NM_175457)	-104.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	128.71	142.84	74.92	159.23	240.25	98.87	139.42	149.01	53.08
Merged-chr14-76504443-3	chr14	76503933	76504933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009366)	promoter-TSS (NM_009366)	-77.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	38.33	28.57	28.67	40.48	43.85	31.35	14.79	18.57	6.25
Merged-chr9-111271733-3	chr9	111271241	111272241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026810)	promoter-TSS (NM_026810)	-104.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	318.63	324.85	278.41	268.54	331.69	233.1	253.48	256.01	186.11
Merged-chr1-161035078-3	chr1	161034585	161035585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151478)	promoter-TSS (NR_151478)	169.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	179.62	181.09	172.04	164.63	190.34	160.76	175.33	198.09	111.79
Merged-chr17-50491660-3	chr17	50491164	50492164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER105|DNA|DNA	-17883.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	31.46	26.73	24.05	26.31	24.72	20.09	30.63	28.3	20.61
Merged-chr2-73312645-3	chr2	73312117	73313117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029022)	promoter-TSS (NM_029022)	-25.0	NM_025854	66935.0	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	237.4	252.51	147.07	235.48	231.85	162.37	181.66	294.04	126.78
Merged-chr19-5810484-3	chr19	5809983	5810983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CTTG)n|Simple_repeat|Simple_repeat	-7811.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	224.25	138.7	119.32	226.03	126.89	147.9	170.05	164.04	79.94
Merged-chr12-102437706-3	chr12	102437208	102438208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	B1_Mur2|SINE|Alu	2105.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	343.8	310.57	236.79	370.42	277.11	211.4	332.7	378.05	194.23
Merged-chr4-63541270-3	chr4	63540770	63541770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3495.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	46.91	39.17	14.8	56.0	46.18	37.78	47.53	43.77	13.74
Merged-chr5-74793702-1	chr5	74793202	74794202	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90799.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.29	2.3	4.62	14.84	15.86	26.53	3.17	0.88	5.62
Merged-chr17-56040304-3	chr17	56039814	56040814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013733)	promoter-TSS (NM_013733)	-102.0	NM_013733	27221.0	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	24.6	30.87	34.22	26.99	30.32	53.05	46.47	41.56	28.73
Merged-chr3-88503478-5	chr3	88502976	88503976	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111102)	promoter-TSS (NM_001111102)	-124.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	96.11	68.2	34.22	138.99	80.24	80.38	66.54	42.01	21.23
Merged-chr2-180040535-3	chr2	180040027	180041027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011969, intron 1 of 6)	intron (NM_011969, intron 1 of 6)	1937.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	54.92	72.8	80.47	58.03	61.11	61.89	90.83	112.75	66.2
Merged-chr18-9552653-4	chr18	9552134	9553134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	66835.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	50.34	44.7	36.07	82.32	87.24	53.05	36.97	30.07	23.73
Merged-chr10-26799844-3	chr10	26799406	26800406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	27394.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	176.19	197.68	82.32	185.55	164.21	139.06	145.75	169.35	84.31
Merged-chr9-22085476-3	chr9	22084972	22085972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253898)	promoter-TSS (NM_001253898)	-45.0	NM_001253897	26940.0	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	116.7	129.94	78.62	117.4	129.22	98.06	161.6	165.37	75.57
Merged-chr5-148489500-3	chr5	148489000	148490000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	62173.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	133.86	102.29	76.77	116.05	116.16	86.01	69.71	118.5	63.7
Merged-chr3-107696641-3	chr3	107696154	107697154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357112)	promoter-TSS (NM_001357112)	-94.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	207.08	119.34	133.19	183.52	78.84	68.32	148.92	69.42	54.96
Merged-chr13-113844099-3	chr13	113843592	113844592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	49584.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	11.44	9.68	5.55	3.37	5.13	1.61	7.39	4.86	7.49
Merged-chr5-109557163-3	chr5	109556652	109557652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016715, exon 3 of 8)	exon (NM_016715, exon 3 of 8)	1841.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	140.15	141.0	119.32	88.39	81.64	121.37	137.3	151.66	86.18
Merged-chr1-131199394-3	chr1	131198890	131199890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	795.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	358.11	460.32	286.74	380.54	369.94	308.65	353.82	374.96	249.81
Merged-chr11-3964944-3	chr11	3964441	3965441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	966.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	80.66	76.49	47.17	69.5	67.64	54.66	71.82	85.78	58.08
Merged-chr12-26438930-2	chr12	26438410	26439410	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	17542.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	92.1	106.9	82.32	86.36	79.31	98.06	6.34	5.75	5.0
Merged-chr17-48263998-5	chr17	48263439	48264439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172623)	promoter-TSS (NM_172623)	-356.0	NM_172623	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	97.82	119.8	62.9	109.3	93.3	93.24	105.62	102.14	69.95
Merged-chr17-45585096-1	chr17	45584596	45585596	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199116)	TTS (NM_001199116)	7297.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	122.99	94.46	124.87	79.62	63.91	114.94	115.12	132.65	127.4
Merged-chr5-3596208-3	chr5	3595710	3596710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027777, exon 1 of 23)	5' UTR (NM_027777, exon 1 of 23)	144.0	NM_001293806	71382.0	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	92.67	91.7	53.65	102.56	100.3	83.59	89.78	80.03	47.46
Merged-chr4-119422811-3	chr4	119422310	119423310	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355214)	promoter-TSS (NM_001355214)	126.0	NM_001014900	332934.0	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	42.9	53.45	41.62	53.3	82.11	78.77	74.99	62.35	27.48
Merged-chr19-3935211-3	chr19	3934708	3935708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161428)	promoter-TSS (NM_001161428)	22.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	193.93	121.65	156.32	179.47	104.96	141.47	161.6	172.0	109.92
Merged-chr15-93519120-3	chr15	93518604	93519604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033217, intron 1 of 7)	CpG	76787.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	5.72	2.76	1.85	6.75	3.73	9.65	4.22	2.21	5.0
Merged-chr1-191070988-2	chr1	191070479	191071479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7958.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	227.11	208.74	170.19	168.0	130.16	151.11	289.39	396.62	168.62
Merged-chr16-21692958-3	chr16	21692437	21693437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	RSINE1|SINE|B4	1728.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	110.41	140.54	48.1	164.63	204.8	143.07	186.94	207.38	85.56
Merged-chr8-116504947-3	chr8	116504448	116505448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029297)	promoter-TSS (NM_029297)	-67.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.86	4.61	5.55	6.07	2.8	4.82	5.28	3.98	9.99
Merged-chr9-35099142-3	chr9	35098636	35099636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-17592.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	79.52	90.31	71.22	105.26	92.84	91.63	33.8	31.84	34.35
Merged-chr12-8674640-3	chr12	8674130	8675130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030723)	promoter-TSS (NM_030723)	-51.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	264.86	207.35	256.21	201.74	162.81	205.77	248.2	167.14	131.78
Merged-chr14-27351654-3	chr14	27351145	27352145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-9744.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	105.83	156.21	118.39	89.06	97.03	139.06	119.35	115.41	83.06
Merged-chr11-70433382-3	chr11	70432861	70433861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	781.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	321.49	236.38	241.41	344.11	216.46	237.92	276.72	345.77	175.49
Merged-chr14-70159502-3	chr14	70158998	70159998	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	4.0	NM_001112735	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	10.3	14.75	20.35	31.71	20.53	30.54	39.08	33.6	16.86
Merged-chr14-7817982-3	chr14	7817523	7818523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134080)	promoter-TSS (NM_134080)	66.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	6.86	3.69	5.55	14.84	7.46	0.0	5.28	3.1	2.5
Merged-chr12-111668713-3	chr12	111668252	111669252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021273)	TTS (NM_021273)	3586.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	173.9	173.25	77.7	136.97	84.9	144.68	117.24	107.45	82.44
Merged-chr5-64818491-1	chr5	64817991	64818991	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 2 of 5)	intron (NM_008453, intron 2 of 5)	14968.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	17.73	17.51	12.95	24.29	19.13	28.13	20.07	15.03	7.49
Merged-chr18-34624597-2	chr18	34624097	34625097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166406)	promoter-TSS (NM_001166406)	-27.0	NM_001166407	19348.0	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	76.66	117.96	103.59	74.22	96.1	117.35	95.06	106.12	61.83
Merged-chrX-74269937-3	chrX	74269456	74270456	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052835)	promoter-TSS (NM_052835)	-860.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	181.91	129.94	97.12	141.69	149.28	135.84	166.88	202.07	106.17
Merged-chrX-18187273-3	chrX	18186764	18187764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	MTE2b|LTR|ERVL-MaLR	24689.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	40.04	44.24	29.6	27.66	36.39	41.8	36.97	42.89	27.48
Merged-chr17-80237062-2	chr17	80236559	80237559	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12608.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	2.86	1.84	1.85	15.52	18.19	14.47	16.9	10.61	13.74
Merged-chr4-72411484-3	chr4	72410972	72411972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210228.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	48.05	61.28	49.02	79.62	56.91	61.09	70.76	76.94	55.58
Merged-chr8-72219706-3	chr8	72219216	72220216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-14.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	176.76	205.97	115.62	145.74	176.81	141.47	180.61	165.81	77.44
Merged-chr13-85289319-3	chr13	85288850	85289850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145452, exon 1 of 25)	5' UTR (NM_145452, exon 1 of 25)	136.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	164.18	136.39	135.97	153.84	113.36	143.88	134.14	134.86	84.31
Merged-chr18-77858680-3	chr18	77858184	77859184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 5 of 14)	intron (NM_013831, intron 5 of 14)	-62294.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	26.31	34.1	35.15	25.64	20.06	54.66	48.58	33.16	49.34
Merged-chr9-74990181-3	chr9	74989683	74990683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	14072.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	26.31	33.64	18.5	23.62	25.66	33.76	49.64	22.11	31.85
Merged-chr5-107960964-3	chr5	107960471	107961471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	26106.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	59.49	97.23	29.6	76.92	75.57	76.36	51.75	98.16	46.84
Merged-chr11-97660424-3	chr11	97659903	97660903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3009.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	578.92	418.39	332.06	553.27	309.3	331.96	512.25	461.18	259.18
Merged-chr8-35556272-3	chr8	35555772	35556772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-31526.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	22.88	28.57	29.6	16.19	24.72	36.17	31.69	58.81	49.34
Merged-chr8-20122336-3	chr8	20121876	20122876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	175056.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	70.36	63.13	19.42	59.38	54.11	40.19	58.09	36.26	23.11
Merged-chr6-127240305-3	chr6	127239784	127240784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67683.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	88.1	60.82	29.6	53.98	22.86	28.94	65.48	51.73	25.61
Merged-chr1-192138136-3	chr1	192137614	192138614	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-74.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	56.06	31.33	44.4	70.17	58.78	77.16	63.37	48.64	29.98
Merged-chr17-45564443-3	chr17	45563944	45564944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357105, intron 1 of 3)	intron (NM_001357105, intron 1 of 3)	508.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	181.34	108.28	117.47	118.75	83.04	127.0	88.72	95.07	81.81
Merged-chr6-90604787-3	chr6	90604282	90605282	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027868)	promoter-TSS (NM_027868)	-98.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	44.05	50.23	58.27	34.41	37.79	58.68	58.09	50.85	32.48
Merged-chr1-67382527-2	chr1	67382025	67383025	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	259498.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	1.14	3.69	3.7	18.89	8.86	20.09	16.9	16.8	13.12
Merged-chr13-51846170-1	chr13	51845670	51846670	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-505.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	141.3	169.11	109.14	126.17	127.82	112.53	176.38	202.51	141.14
Merged-chrX-52912211-3	chrX	52911693	52912693	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290546)	promoter-TSS (NM_001290546)	-21.0	NM_027642	70998.0	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	68.65	76.49	42.55	71.52	54.11	43.4	83.44	94.62	63.7
Merged-chr1-171283468-3	chr1	171282983	171283983	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013919, intron 8 of 12)	intron (NM_013919, intron 8 of 12)	-2297.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	64.07	67.74	79.55	61.4	48.05	67.52	65.48	63.23	66.82
Merged-chr10-59974272-1	chr10	59973772	59974772	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22502.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	20.02	18.43	28.67	45.88	41.52	45.01	19.01	18.57	14.99
Merged-chr12-85498030-3	chr12	85497539	85498539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24149.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	301.47	178.32	124.87	303.62	190.8	191.3	257.71	243.19	104.3
Merged-chr1-66817622-3	chr1	66817031	66818031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	64.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	271.15	196.75	194.24	293.5	173.07	225.06	264.05	191.46	149.89
Merged-chr13-23710629-3	chr13	23710142	23711142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010424, exon 1 of 6)	exon (NM_010424, exon 1 of 6)	212.0	NM_001347493	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	435.9	417.93	250.66	385.94	278.51	235.51	355.93	543.87	202.35
Merged-chr15-93340840-3	chr15	93340331	93341331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3896.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	9.72	8.75	7.4	17.54	17.73	8.04	10.56	13.71	13.74
Merged-chr13-107889242-3	chr13	107888732	107889732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	CpG	832.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	177.34	165.42	195.17	168.68	100.77	143.07	137.3	112.75	133.02
Merged-chr5-98329361-3	chr5	98328843	98329843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024614)	promoter-TSS (NM_001024614)	39.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	3.43	2.76	1.85	4.72	6.53	2.41	2.11	3.98	2.5
Merged-chr17-5576924-3	chr17	5576416	5577416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	84316.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	98.39	85.25	41.62	109.3	76.97	93.24	110.9	92.41	49.96
Merged-chr5-127610964-3	chr5	127610454	127611454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6438.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	178.48	208.27	126.72	203.76	185.2	143.07	215.46	245.4	114.91
Merged-chr9-107724945-3	chr9	107724428	107725428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14453.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	82.38	76.49	45.32	108.63	92.84	105.3	111.96	97.72	63.7
Merged-chr7-81213221-3	chr7	81212712	81213712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	-592.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	269.44	212.42	212.74	315.77	188.47	243.55	268.27	244.08	156.13
Merged-chr8-123041626-2	chr8	123041172	123042172	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045268)	promoter-TSS (NR_045268)	612.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	262.0	221.64	345.93	246.95	191.73	247.57	279.89	198.53	254.18
Merged-chr7-44344855-3	chr7	44344376	44345376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 21 of 24)	intron (NM_001034115, intron 21 of 24)	30154.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	6.86	5.53	1.85	11.47	5.13	6.43	11.62	3.98	7.49
Merged-chr10-99179825-3	chr10	99179344	99180344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71709.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	255.14	218.87	98.97	286.08	200.6	139.06	212.29	240.54	141.77
Merged-chr2-148902522-3	chr2	148902014	148903014	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27002.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	7.44	6.45	5.55	9.45	7.93	1.61	4.22	7.52	3.75
Merged-chr13-112507020-3	chr13	112506526	112507526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010560)	TTS (NM_010560)	42956.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	20.59	22.58	22.2	20.92	25.19	42.6	27.46	24.32	22.48
Merged-chr3-88913941-3	chr3	88913437	88914437	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144898)	promoter-TSS (NM_144898)	13.0	NM_144898	229524.0	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	49.77	48.38	46.25	62.75	55.98	51.44	59.15	66.33	33.1
Merged-chr8-116993580-3	chr8	116993055	116994055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026572)	promoter-TSS (NM_026572)	-106.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	65.79	60.36	38.85	64.77	63.45	73.95	70.76	62.35	41.22
Merged-chr4-139743782-2	chr4	139743275	139744275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 8 of 8)	intron (NM_011039, intron 8 of 8)	89193.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	60.64	67.27	52.72	0.0	2.8	1.61	78.16	84.45	39.97
Merged-chr8-88199273-5	chr8	88198750	88199750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164497)	promoter-TSS (NM_001164497)	37.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	199.07	184.77	110.07	203.09	225.79	155.13	210.18	183.5	103.67
Merged-chr8-79498828-3	chr8	79498332	79499332	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99364.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	37.76	34.1	34.22	49.25	28.92	33.76	46.47	38.47	20.61
Merged-chr7-89941186-3	chr7	89940647	89941647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291288)	promoter-TSS (NM_001291288)	57.0	NM_001291289	67669.0	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	29.17	45.62	37.92	35.09	47.12	43.4	53.87	61.02	18.74
Merged-chr2-101766799-3	chr2	101766308	101767308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30899.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	102.97	73.73	84.17	62.07	43.85	73.14	82.38	82.24	74.32
Merged-chr8-8143194-3	chr8	8142704	8143704	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	517569.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	15.45	9.22	7.4	9.45	6.53	8.04	24.29	15.03	21.86
Merged-chr15-5347973-3	chr15	5347484	5348484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103797.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	66.93	85.71	37.92	65.45	62.05	72.34	94.0	87.99	59.33
Merged-chr5-125333220-3	chr5	125332714	125333714	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	7880.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	24.03	21.2	24.05	28.34	24.72	52.25	30.63	30.51	31.85
Merged-chr18-4797948-3	chr18	4797452	4798452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14534.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	30.32	17.51	27.75	13.49	18.19	35.37	10.56	11.05	15.61
Merged-chr9-61054651-3	chr9	61054165	61055165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37596.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	7.44	11.52	15.72	10.8	7.46	14.47	16.9	20.78	16.86
Merged-chr4-120815827-3	chr4	120815344	120816344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357192)	promoter-TSS (NM_001357192)	-131.0	NM_001357192	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	63.5	63.59	40.7	45.88	41.05	33.76	61.26	70.3	27.48
Merged-chrX-48285433-4	chrX	48284937	48285937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045916)	promoter-TSS (NR_045916)	-11.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	17.16	20.27	16.65	19.57	10.73	39.39	30.63	30.51	29.35
Merged-chr15-63998234-3	chr15	63997750	63998750	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360035)	promoter-TSS (NM_001360035)	-184.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	89.81	50.23	87.87	116.05	37.79	51.44	97.17	45.99	34.97
Merged-chr14-56668214-3	chr14	56667724	56668724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023773)	promoter-TSS (NM_023773)	-24.0	NR_153396	75339.0	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	41.19	42.39	28.67	49.25	42.92	54.66	52.81	36.7	33.1
Merged-chr9-41130737-3	chr9	41130220	41131220	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27342.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	27.46	13.36	6.47	29.01	9.8	22.51	20.07	16.8	16.86
Merged-chr2-51972256-3	chr2	51971755	51972755	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019401, intron 1 of 7)	intron (NM_019401, intron 1 of 7)	953.0	NM_001141949	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	101.83	140.54	81.4	110.65	104.96	102.08	121.46	133.98	101.17
Merged-chr2-45236347-3	chr2	45235847	45236847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118905.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	301.47	222.56	98.97	265.84	164.21	118.16	192.23	189.69	108.67
Merged-chr10-77259200-3	chr10	77258708	77259708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026944)	promoter-TSS (NR_026944)	15.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	201.93	194.45	187.77	190.95	138.09	167.19	179.55	180.85	140.52
Merged-chr1-167337324-3	chr1	167336811	167337811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12680.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	104.11	140.08	98.97	107.28	118.49	110.12	137.3	191.9	101.8
Merged-chr10-85970065-3	chr10	85969565	85970565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-12272.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	5.15	2.76	1.85	9.45	3.27	3.22	4.22	3.54	1.25
Merged-chr1-194976415-3	chr1	194975931	194976931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033564, exon 1 of 5)	non-coding (NR_033564, exon 1 of 5)	528.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	138.44	116.12	111.92	170.7	150.22	122.18	129.91	102.58	86.18
Merged-chr8-79640141-3	chr8	79639641	79640641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081164, intron 1 of 20)	CpG	465.0	NM_001081164	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	267.15	253.43	214.59	295.53	298.1	237.12	324.25	198.09	151.14
Merged-chr9-96363795-3	chr9	96363277	96364277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-62.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	335.8	247.9	200.71	311.04	270.11	202.55	257.71	256.01	173.62
Merged-chr3-137981559-3	chr3	137981059	137982059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310753)	promoter-TSS (NM_001310753)	-10.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	157.31	138.24	98.05	112.0	137.15	98.06	152.09	174.66	68.07
Merged-chr1-173741829-3	chr1	173741327	173742327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204910)	promoter-TSS (NM_001204910)	-18.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	297.47	397.66	205.34	324.54	410.06	284.54	313.69	431.11	176.74
Merged-chr5-125348246-3	chr5	125347739	125348739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7145.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	77.23	53.45	52.72	75.57	46.18	49.83	33.8	25.65	22.48
Merged-chr1-151118707-3	chr1	151118197	151119197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-19337.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	4.58	11.52	12.95	6.75	5.6	15.27	16.9	7.07	8.12
Merged-chr7-141266462-3	chr7	141265962	141266962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252600)	promoter-TSS (NM_001252600)	-38.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	237.97	249.75	152.62	213.89	172.61	131.82	219.69	264.86	187.36
Merged-chr18-46533800-3	chr18	46533303	46534303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7832.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	22.88	16.59	5.55	50.6	19.13	14.47	43.3	25.2	6.25
Merged-chr15-8169013-3	chr15	8168454	8169454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162906)	promoter-TSS (NM_001162906)	-152.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	44.05	43.77	39.77	39.81	48.52	50.64	47.53	48.64	40.59
Merged-chr19-9023365-3	chr19	9022859	9023859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039959, intron 4 of 5)	intron (NM_001039959, intron 4 of 5)	34075.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	17.16	14.75	9.25	24.29	32.66	32.15	21.12	7.96	11.24
Merged-chr18-24246071-3	chr18	24245567	24246567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013814, exon 4 of 13)	exon (NM_013814, exon 4 of 13)	40073.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	139.01	208.27	95.27	204.44	285.5	172.81	160.54	218.87	84.31
Merged-chr2-79619191-3	chr2	79618675	79619675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16250.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	55.49	43.77	23.12	72.19	55.51	49.03	17.96	10.61	12.49
Merged-chr1-13589950-3	chr1	13589430	13590430	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028173)	promoter-TSS (NM_028173)	-20.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	193.93	193.99	166.49	201.07	138.09	133.43	173.21	142.82	126.78
Merged-chr7-142393278-3	chr7	142392778	142393778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5408.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	236.83	150.22	155.39	174.75	79.31	124.59	200.68	179.96	129.28
Merged-chr7-75638952-3	chr7	75638443	75639443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	183409.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	62.93	106.9	38.85	73.54	62.05	29.74	14.79	8.4	7.49
Merged-chr11-116017888-1	chr11	116017388	116018388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5169.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	19.45	2.76	3.7	14.84	0.0	4.82	2.11	6.63	3.75
Merged-chr2-136937008-3	chr2	136936516	136937516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37665.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	21.17	28.11	27.75	42.51	42.45	49.83	28.52	22.55	38.72
Merged-chr10-117393424-3	chr10	117392927	117393927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16454.0	NM_001310609	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	67.5	61.75	9.25	78.94	54.58	32.96	110.9	84.45	31.23
Merged-chr10-19508220-1	chr10	19507720	19508720	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152784)	TTS (NR_152784)	13577.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	9.15	5.99	5.55	8.1	7.46	16.88	2.11	4.42	3.75
Merged-chr17-35195888-3	chr17	35195384	35196384	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105939)	TTS (NR_105939)	912.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	308.34	270.48	171.12	204.44	146.02	86.81	21.12	21.67	12.49
Merged-chr10-61451711-3	chr10	61451208	61452208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010124, intron 1 of 2)	intron (NM_010124, intron 1 of 2)	961.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	127.0	146.07	123.94	128.87	141.35	126.19	144.7	193.67	94.3
Merged-chr9-111094797-3	chr9	111094281	111095281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-23330.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	8.01	9.68	10.17	20.24	14.0	6.43	4.22	4.42	9.37
Merged-chr2-118111766-3	chr2	118111259	118112259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011580)	promoter-TSS (NM_011580)	-117.0	NM_011580	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	25.74	22.12	18.5	22.94	19.59	12.86	17.96	14.59	22.48
Merged-chr19-41345132-3	chr19	41344625	41345625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	39945.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	458.21	325.77	227.54	343.43	260.31	256.41	380.23	415.64	220.46
Merged-chr2-129596088-3	chr2	129595594	129596594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	632.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	355.82	342.36	257.14	407.53	338.69	319.91	267.21	409.45	172.37
Merged-chr13-106691941-3	chr13	106691449	106692449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2c|LINE|L1	245009.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	10.87	11.06	12.95	14.84	12.6	17.68	6.34	5.31	9.99
Merged-chr10-121626511-3	chr10	121625995	121626995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081056)	promoter-TSS (NM_001081056)	-163.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	188.78	199.98	173.89	224.68	222.99	126.19	218.63	238.33	108.04
Merged-chr18-43509142-3	chr18	43508617	43509617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70831.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	36.61	36.4	23.12	28.34	26.59	44.21	44.36	30.95	14.99
Merged-chr5-105531539-1	chr5	105531039	105532039	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	L1MEf|LINE|L1	12068.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	40.62	23.96	19.42	38.46	17.26	37.78	5.28	3.1	3.12
Merged-chr8-90909380-4	chr8	90908829	90909829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	CpG	-22920.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	168.18	106.44	186.84	145.74	106.36	121.37	171.1	111.87	111.79
Merged-chr2-129800540-3	chr2	129800029	129801029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183262)	promoter-TSS (NM_183262)	12.0	NM_001038635	67333.0	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	103.54	135.93	87.87	92.44	155.35	118.16	106.67	87.99	61.2
Merged-chr8-68392756-3	chr8	68392230	68393230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	24271.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	26.31	17.05	16.65	55.33	45.72	59.48	25.35	15.92	22.48
Merged-chr2-128082783-1	chr2	128082283	128083283	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028765, intron 15 of 17)	intron (NM_028765, intron 15 of 17)	-43255.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.86	3.23	1.85	4.05	4.67	0.0	6.34	2.65	3.75
Merged-chr8-109564090-3	chr8	109563590	109564590	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151644, intron 1 of 26)	intron (NR_151644, intron 1 of 26)	1771.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	45.19	42.85	39.77	26.99	28.46	18.49	39.08	44.22	25.61
Merged-chr3-87983023-1	chr3	87982523	87983523	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11930.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	1.72	4.15	0.0	2.02	0.93	0.0	7.39	4.42	1.25
Merged-chr16-57534549-3	chr16	57534031	57535031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-14711.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	44.62	53.45	25.9	51.28	34.06	36.17	28.52	26.53	34.97
Merged-chr14-20845892-3	chr14	20845395	20846395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9233.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	147.59	143.76	76.77	130.22	125.02	125.39	174.27	199.42	96.8
Merged-chr19-4294584-3	chr19	4294085	4295085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 2 of 20)	intron (NM_001290818, intron 2 of 20)	-11448.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	92.67	74.65	54.57	76.24	33.59	120.57	117.24	87.11	65.58
Merged-chr4-136053446-3	chr4	136052955	136053955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-84.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	126.42	111.51	65.67	128.2	136.22	92.44	142.59	107.45	64.95
Merged-chr8-115650417-3	chr8	115649930	115650930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56464.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	48.05	48.84	52.72	62.75	36.39	51.44	41.19	35.82	33.72
Merged-chr13-64432509-4	chr13	64432059	64433059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053180)	promoter-TSS (NM_053180)	6.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	50.34	57.14	40.7	69.5	66.24	61.09	65.48	62.79	39.35
Merged-chr10-34194707-3	chr10	34194216	34195216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12835.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	132.72	112.89	76.77	105.93	57.38	67.52	99.28	88.43	78.69
Merged-chr1-34472754-3	chr1	34472296	34473296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011206, exon 13 of 15)	exon (NM_011206, exon 13 of 15)	13050.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	105.26	104.6	97.12	68.82	70.91	96.45	108.79	103.47	88.06
Merged-chr4-123016597-3	chr4	123016092	123017092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025873)	promoter-TSS (NM_025873)	-1.0	NM_025873	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	43.48	60.36	33.3	47.9	40.12	35.37	36.97	42.45	24.36
Merged-chr7-125707811-3	chr7	125707324	125708324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207239)	promoter-TSS (NM_207239)	-46.0	NM_001081022	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	129.28	125.79	100.82	96.48	95.63	92.44	109.84	92.41	56.83
Merged-chr2-103967015-3	chr2	103966526	103967526	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-2531.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	97.25	92.16	56.42	87.71	68.58	37.78	67.6	55.71	45.59
Merged-chr4-97751232-3	chr4	97750741	97751741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-26385.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	197.36	260.34	123.94	164.63	214.59	170.4	195.39	238.77	130.53
Merged-chr13-44733966-3	chr13	44733452	44734452	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	CpG	2681.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	272.3	144.69	106.37	236.15	120.36	124.59	145.75	97.72	48.09
Merged-chr18-61099176-3	chr18	61098678	61099678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6394.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	140.15	148.37	108.22	146.41	119.89	105.3	140.47	156.97	91.81
Merged-chr14-101594476-3	chr14	101593949	101594949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	14742.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	56.63	65.43	31.45	61.4	41.99	73.14	53.87	53.94	19.36
Merged-chr5-67306989-3	chr5	67306495	67307495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310629)	promoter-TSS (NM_001310629)	40.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	293.46	239.61	195.17	247.62	202.46	171.21	289.39	255.57	104.92
Merged-chr17-67334470-1	chr17	67333970	67334970	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	19989.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	8.01	15.67	11.1	9.45	10.26	11.25	29.57	17.24	19.98
Merged-chr2-25262521-3	chr2	25262021	25263021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175286)	promoter-TSS (NM_175286)	-77.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	59.49	37.78	29.6	37.78	34.99	28.94	66.54	50.41	26.23
Merged-chr4-129032338-3	chr4	129031836	129032836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25935.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	433.04	394.43	260.84	368.4	247.72	227.47	324.25	384.69	237.32
Merged-chr2-11705763-3	chr2	11705257	11706257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271501)	promoter-TSS (NM_001271501)	45.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	175.62	140.54	144.29	178.13	142.75	116.55	153.15	131.32	86.81
Merged-chr16-57231583-3	chr16	57231072	57232072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358433)	promoter-TSS (NM_001358433)	-106.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	191.64	148.37	128.57	186.22	149.75	148.7	189.06	208.26	100.55
Merged-chr2-112268089-3	chr2	112267588	112268588	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133649, intron 1 of 24)	intron (NM_133649, intron 1 of 24)	1774.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	70.36	82.94	42.55	66.8	75.57	72.34	116.18	129.11	69.32
Merged-chr7-105554400-3	chr7	105553923	105554923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011421)	promoter-TSS (NM_011421)	63.0	NM_011421	20597.0	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	32.04	31.33	15.72	39.81	42.45	45.82	52.81	36.7	22.48
Merged-chr8-125286409-3	chr8	125285937	125286937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206396.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	39.47	20.74	12.02	64.77	47.58	28.94	66.54	80.47	47.46
Merged-chr19-41896209-3	chr19	41895707	41896707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199447)	promoter-TSS (NM_199447)	-54.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	145.3	118.42	93.42	107.28	84.44	49.03	97.17	141.94	58.08
Merged-chr1-37890465-3	chr1	37889970	37890970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026913)	promoter-TSS (NM_026913)	-7.0	NM_001356482	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	91.53	80.64	83.25	76.92	80.24	67.52	94.0	100.37	51.84
Merged-chr16-10993156-3	chr16	10992656	10993656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019980)	promoter-TSS (NM_019980)	-35.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	262.0	182.01	170.19	259.09	187.07	245.16	237.64	248.5	122.41
Merged-chr8-117364983-3	chr8	117364479	117365479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	15809.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	60.64	47.92	42.55	85.69	66.71	72.34	71.82	45.99	24.36
Merged-chr14-75790559-3	chr14	75790052	75791052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-3515.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	64.07	67.27	49.02	64.77	51.78	40.19	81.33	74.73	68.07
Merged-chr15-58415459-3	chr15	58414950	58415950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145959)	promoter-TSS (NM_145959)	-18.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	240.26	164.5	170.19	255.04	141.82	118.96	221.8	161.83	103.05
Merged-chr15-76351703-3	chr15	76351198	76352198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025340)	promoter-TSS (NM_025340)	404.0	NM_026859	68877.0	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	97.25	116.12	117.47	84.34	122.69	122.18	115.12	104.79	68.7
Merged-chrX-7601128-1	chrX	7600628	7601628	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138603, intron 2 of 16)	intron (NM_138603, intron 2 of 16)	4292.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	3.43	3.23	0.0	12.82	9.8	9.65	16.9	17.24	8.74
Merged-chr17-56613450-3	chr17	56612971	56613971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018730)	promoter-TSS (NM_018730)	76.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	150.45	135.93	101.74	122.8	105.43	98.87	114.07	100.37	62.45
Merged-chr1-173913037-3	chr1	173912522	173913522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301745)	promoter-TSS (NM_001301745)	24.0	NM_001301745	381308.0	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	140.15	149.75	55.5	221.98	239.32	127.0	72.88	124.25	78.69
Merged-chr2-29060266-3	chr2	29059766	29060766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009442)	promoter-TSS (NM_009442)	3.0	NM_009442	22130.0	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	80.66	72.8	74.92	74.89	51.32	66.71	52.81	45.99	49.34
Merged-chr5-127611322-3	chr5	127610830	127611830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	6062.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	113.27	142.84	97.12	145.06	118.96	116.55	153.15	175.54	94.93
Merged-chr14-72581225-3	chr14	72580718	72581718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 7 of 25)	intron (NM_207636, intron 7 of 25)	128785.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	60.64	73.26	38.85	42.51	35.92	46.62	33.8	65.0	55.58
Merged-chr10-80826456-3	chr10	80825948	80826948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027656)	promoter-TSS (NR_027656)	-208.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	309.48	279.24	203.49	285.41	208.53	219.43	223.91	249.38	129.28
Merged-chr18-5042685-1	chr18	5042185	5043185	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	6.86	10.6	1.85	11.47	3.73	4.82	3.17	1.77	3.12
Merged-chr19-29366394-3	chr19	29365895	29366895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	253.99	288.91	127.64	201.74	222.52	182.46	219.69	339.14	109.92
Merged-chr5-41739004-3	chr5	41738517	41739517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25203.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	59.49	96.3	61.97	33.06	38.72	50.64	72.88	101.26	51.21
Merged-chr7-110379527-3	chr7	110379037	110380037	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	157834.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	22.31	19.35	29.6	36.43	30.79	27.33	34.85	57.92	36.85
Merged-chr11-62281462-3	chr11	62280970	62281970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	-3.0	NM_028360	72795.0	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	217.95	172.79	160.02	251.67	167.94	127.8	227.08	210.91	99.92
Merged-chr15-100614621-3	chr15	100614113	100615113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045701, exon 2 of 2)	non-coding (NR_045701, exon 2 of 2)	497.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	240.26	188.46	189.62	273.26	210.4	210.59	207.01	296.69	124.28
Merged-chr11-110399078-3	chr11	110398601	110399601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011943)	promoter-TSS (NM_011943)	-1.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	9.15	11.52	9.25	8.1	10.26	11.25	24.29	9.29	13.12
Merged-chr2-167063134-3	chr2	167062624	167063624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033196)	promoter-TSS (NM_001033196)	-109.0	NM_001033196	98999.0	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	191.07	99.53	100.82	181.5	56.91	90.02	164.76	79.59	84.31
Merged-chr6-115847219-3	chr6	115846732	115847732	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010774, intron 3 of 7)	B3A|SINE|B2	6109.0	NM_010774	17193.0	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	42.9	45.62	37.0	54.65	38.25	35.37	34.85	46.87	48.71
Merged-chr15-11716319-3	chr15	11715793	11716793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	189381.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	28.6	40.55	16.65	34.41	41.05	72.34	51.75	68.09	43.09
Merged-chr2-91476350-3	chr2	91475864	91476864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145857, exon 9 of 12)	exon (NM_001145857, exon 9 of 12)	18833.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	74.94	48.84	34.22	84.34	67.18	60.28	59.15	49.96	31.85
Merged-chr7-27449425-3	chr7	27448943	27449943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144923, intron 1 of 4)	intron (NM_144923, intron 1 of 4)	1465.0	NM_144923	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	83.52	90.77	97.12	86.36	68.58	122.18	115.12	118.06	98.68
Merged-chr10-61648594-3	chr10	61648109	61649109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026438)	promoter-TSS (NM_026438)	-12.0	NM_026438	67895.0	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	28.6	21.66	13.87	45.88	24.26	40.99	25.35	23.43	16.24
Merged-chr2-155236514-3	chr2	155236007	155237007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291108)	promoter-TSS (NM_001291108)	-26.0	NR_111891	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	95.53	105.98	78.62	164.63	194.53	167.19	116.18	95.51	54.33
Merged-chr19-21406120-1	chr19	21405620	21406620	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	intron (NM_010266, intron 10 of 13)	66541.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.0	3.23	0.0	10.8	2.8	5.63	2.11	0.0	1.25
Merged-chr11-94687372-3	chr11	94686864	94687864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9871.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	76.08	72.34	36.07	105.26	86.77	63.5	72.88	82.69	49.34
Merged-chr1-37472483-3	chr1	37471975	37472975	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	16130.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	47.48	41.01	46.25	62.07	53.65	43.4	57.03	70.75	47.46
Merged-chr1-74295711-3	chr1	74295197	74296197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	intron (NM_027154, intron 1 of 11)	8639.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	75.51	57.14	34.22	80.97	56.91	74.75	35.91	24.32	26.85
Merged-chr5-151651210-3	chr5	151650723	151651723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027009)	promoter-TSS (NM_027009)	-15.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	143.59	107.82	108.22	126.17	88.17	101.28	146.81	96.83	76.82
Merged-chr10-40077788-3	chr10	40077303	40078303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 2 of 5)	intron (NM_001114332, intron 2 of 5)	-52535.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	45.76	43.77	43.47	35.76	44.32	38.58	11.62	36.26	25.61
Merged-chr14-63104183-3	chr14	63103677	63104677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18285.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	314.06	310.57	172.04	377.84	348.95	275.7	320.02	416.08	189.23
Merged-chr15-98662752-6	chr15	98662236	98663236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080981, intron 1 of 16)	CpG	153.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	439.91	432.68	311.71	402.81	379.27	330.36	341.15	370.54	205.47
Merged-chr15-25268586-3	chr15	25268088	25269088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145176.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	127.0	123.95	72.15	114.7	131.09	59.48	99.28	133.09	39.97
Merged-chr10-122736981-3	chr10	122736479	122737479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	57664.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	140.15	129.48	92.5	149.79	97.5	94.85	178.5	222.41	114.91
Merged-chr2-166446719-3	chr2	166446209	166447209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	-742.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	358.11	272.78	153.54	381.22	260.78	209.79	305.24	377.17	149.26
Merged-chr4-47353137-3	chr4	47352627	47353627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009370)	promoter-TSS (NM_009370)	-95.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	151.02	86.63	104.52	127.52	74.17	108.51	140.47	82.69	73.07
Merged-chr2-167690100-1	chr2	167689600	167690600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_110334)	promoter-TSS (NR_110334)	-659.0	NR_110334	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	243.12	214.26	164.64	263.14	215.99	206.57	209.12	185.27	147.39
Merged-chr11-69059630-3	chr11	69059122	69060122	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-153.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	214.52	183.39	148.92	175.43	139.49	143.88	173.21	231.25	187.36
Merged-chr9-35116918-3	chr9	35116419	35117419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009178)	promoter-TSS (NM_009178)	-55.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	176.19	140.54	187.77	176.78	137.15	205.77	135.19	149.89	125.53
Merged-chr11-115631142-3	chr11	115630633	115631633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2838.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	176.19	145.61	112.84	203.76	130.16	135.84	221.8	228.6	149.89
Merged-chr7-97211317-3	chr7	97210815	97211815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	114649.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	120.13	158.51	70.3	122.8	135.29	95.65	120.41	178.19	78.69
Merged-chr2-45085829-3	chr2	45085297	45086297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	24480.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	146.45	148.37	100.82	199.04	170.28	117.35	171.1	217.1	63.08
Merged-chr1-133131169-3	chr1	133130664	133131664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133819)	promoter-TSS (NM_133819)	-2.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	327.79	345.59	271.01	310.37	325.62	272.48	292.56	284.31	212.96
Merged-chr7-80324426-3	chr7	80323915	80324915	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173445)	promoter-TSS (NM_173445)	39.0	NM_173445	269955.0	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	242.55	260.8	169.27	236.83	296.23	184.87	265.1	275.47	99.3
Merged-chr5-72182925-3	chr5	72182434	72183434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14745.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	16.59	20.27	12.95	24.29	17.73	29.74	15.84	9.29	9.99
Merged-chr3-79572605-3	chr3	79572103	79573103	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152118)	TTS (NR_152118)	4411.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	122.99	96.76	103.59	134.27	118.03	103.69	122.52	167.14	84.31
Merged-chr2-181483684-3	chr2	181483136	181484136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9570.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	115.55	71.88	42.55	85.69	65.31	49.03	62.31	49.08	38.72
Merged-chr2-91966491-3	chr2	91966004	91967004	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2941.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	144.73	151.6	104.52	157.21	157.21	124.59	177.44	208.7	124.91
Merged-chr13-73767353-3	chr13	73766851	73767851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	3654.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	20.02	26.73	25.9	36.43	33.59	43.4	32.74	22.55	24.36
Merged-chr16-33560470-3	chr16	33559968	33560968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	41873.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	9.72	5.07	1.85	10.12	1.87	11.25	4.22	3.1	3.75
Merged-chr2-133497972-3	chr2	133497467	133498467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54192.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	82.38	81.1	70.3	101.21	78.37	78.77	62.31	77.82	69.95
Merged-chr17-32947441-3	chr17	32946963	32947963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130882)	promoter-TSS (NM_130882)	-102.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	50.34	68.2	83.25	91.76	87.7	112.53	67.6	91.97	48.71
Merged-chr10-14705557-3	chr10	14705075	14706075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045824)	promoter-TSS (NR_045824)	-34.0	NR_045824	69412.0	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	106.97	100.91	125.79	91.76	106.36	110.92	117.24	102.14	78.07
Merged-chr7-139295854-3	chr7	139295370	139296370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47388.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	33.18	45.62	48.1	51.28	48.52	34.56	39.08	42.45	26.23
Merged-chrX-36115364-3	chrX	36114869	36115869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	intron (NM_133990, intron 1 of 10)	3261.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	53.77	76.49	44.4	43.86	48.52	28.13	97.17	83.57	32.48
Merged-chr7-27354190-1	chr7	27353690	27354690	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138676, intron 6 of 17)	intron (NM_138676, intron 6 of 17)	1818.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	8.01	2.3	1.85	1.35	2.33	4.82	7.39	6.19	5.0
Merged-chrX-142226715-3	chrX	142226222	142227222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290532)	promoter-TSS (NM_001290532)	-48.0	NM_001290532	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	30.32	53.45	45.32	41.16	38.25	48.23	83.44	105.24	53.08
Merged-chr2-153784835-3	chr2	153784331	153785331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 3 of 7)	intron (NR_036629, intron 3 of 7)	3952.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	37.18	65.43	49.95	49.25	74.64	42.6	69.71	65.88	36.85
Merged-chr13-45088814-3	chr13	45088331	45089331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-86735.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	25.74	25.34	10.17	52.63	36.85	20.9	52.81	54.39	29.35
Merged-chr19-10305818-3	chr19	10305303	10306303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198114)	promoter-TSS (NM_198114)	-926.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	105.26	96.3	49.02	143.71	111.03	66.71	55.98	46.87	16.24
Merged-chr3-95588844-3	chr3	95588328	95589328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177669)	promoter-TSS (NM_001177669)	-106.0	NM_146133	229593.0	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	35.47	50.23	48.1	35.09	43.85	9.65	36.97	33.6	23.11
Merged-chr12-73681388-3	chr12	73680878	73681878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	96582.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	132.14	105.98	71.22	172.73	131.09	106.1	140.47	149.89	77.44
Merged-chr2-181680247-3	chr2	181679749	181680749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356342)	promoter-TSS (NM_001356342)	-48.0	NM_001356343	21400.0	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	20.02	29.95	30.52	25.64	23.79	49.03	46.47	37.14	25.61
Merged-chr15-31336834-3	chr15	31336317	31337317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	30942.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	27.46	26.26	26.82	74.22	55.05	40.99	36.97	37.14	14.36
Merged-chr15-74926866-3	chr15	74926360	74927360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28191.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	104.69	97.23	116.54	65.45	49.92	45.82	141.53	214.45	98.05
Merged-chr5-123014952-3	chr5	123014457	123015457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-117.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	118.42	133.17	86.95	127.52	99.37	89.22	134.14	107.0	104.92
Merged-chr12-70974652-3	chr12	70974247	70975247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011184, exon 1 of 11)	exon (NM_011184, exon 1 of 11)	124.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	533.15	545.57	394.96	508.06	554.68	348.04	455.22	522.64	289.16
Merged-chr10-59263179-3	chr10	59262685	59263685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41263.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	70.93	93.08	83.25	96.48	61.58	94.85	122.52	129.55	79.94
Merged-chr9-82976127-2	chr9	82975626	82976626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-637.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	86.95	123.95	93.42	62.07	90.04	86.01	106.67	104.79	89.31
Merged-chr15-25563403-1	chr15	25562903	25563903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-59147.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	241.98	199.98	103.59	2.7	5.13	4.82	6.34	2.65	5.62
Merged-chr4-96553639-1	chr4	96553139	96554139	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010008)	promoter-TSS (NM_010008)	12.0	NM_010008	13110.0	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	4.0	3.23	4.62	14.17	7.46	4.02	0.0	0.88	1.25
Merged-chr18-80151041-3	chr18	80150523	80151523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175028, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	459.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	297.47	209.2	184.07	314.42	185.67	192.91	287.28	192.34	141.77
Merged-chr8-82370843-3	chr8	82370328	82371328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	31758.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	70.36	82.02	45.32	57.35	57.38	54.66	68.65	88.88	54.96
Merged-chr4-135495699-3	chr4	135495202	135496202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030189)	promoter-TSS (NM_030189)	-285.0	NM_030189	78806.0	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	64.64	59.44	64.75	35.76	25.66	25.72	47.53	72.96	26.23
Merged-chr4-129811047-3	chr4	129810562	129811562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9417.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	352.39	310.57	216.44	392.69	286.9	289.36	435.15	539.89	159.88
Merged-chr4-9631840-3	chr4	9631370	9632370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	11847.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	208.23	197.22	123.02	221.98	149.75	124.59	242.92	339.58	126.15
Merged-chr12-17266511-3	chr12	17266028	17267028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027959)	promoter-TSS (NM_027959)	-67.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	80.66	105.52	50.87	90.41	108.23	89.22	92.94	59.25	53.08
Merged-chr5-139406266-3	chr5	139405790	139406790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-97.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	175.05	152.52	160.94	211.19	199.2	193.71	217.57	237.44	110.54
Merged-chr10-75921444-5	chr10	75920953	75921953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001161853, exon 1 of 9)	5' UTR (NM_001161853, exon 1 of 9)	161.0	NM_011418	20587.0	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	98.97	90.31	107.29	82.99	89.1	106.9	111.96	95.95	54.96
Merged-chr1-153754182-4	chr1	153753770	153754770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	4844.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	78.94	62.21	38.85	68.15	46.18	35.37	44.36	36.26	22.48
Merged-chr8-47990546-3	chr8	47990038	47991038	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	13.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	102.97	106.9	102.67	128.87	109.63	110.12	127.8	103.47	82.44
Merged-chrM-1911-2	chrM	1402	2402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											278.59	247.9	22.2	138.99	31.72	32.96	141.53	35.82	27.48
Merged-chr15-66577953-2	chr15	66577466	66578466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081409, intron 1 of 20)	CpG	394.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	323.78	260.34	211.81	256.39	228.12	216.22	266.16	212.68	141.14
Merged-chr2-30441953-3	chr2	30441450	30442450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25900.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	249.99	323.93	198.87	261.12	251.91	272.48	301.01	410.33	189.86
Merged-chr5-143818182-1	chr5	143817682	143818682	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-53680.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	145.3	167.73	96.2	120.77	118.03	168.8	174.27	136.63	104.92
Merged-chr15-66729647-3	chr15	66729141	66730141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009375, exon 27 of 48)	exon (NM_009375, exon 27 of 48)	58871.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	72.65	78.79	50.87	89.74	53.18	94.85	78.16	77.82	44.34
Merged-chr6-13690568-3	chr6	13690064	13691064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12598.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	29.17	40.09	33.3	30.36	34.06	21.7	26.4	34.93	28.73
Merged-chr10-89732377-3	chr10	89731881	89732881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-86.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	34.32	43.31	29.6	42.51	37.79	44.21	40.14	61.9	29.98
Merged-chr14-69089360-3	chr14	69088849	69089849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60060.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	75.51	96.3	45.32	49.25	50.85	53.05	43.3	55.71	41.84
Merged-chr13-9783907-3	chr13	9783407	9784407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18586.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	56.06	80.18	72.15	60.72	55.05	54.66	69.71	64.56	73.07
Merged-chr6-50458122-3	chr6	50457666	50458666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1812.0	NM_001347213	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	4.0	4.61	5.55	8.1	1.4	5.63	5.28	2.21	2.5
Merged-chr19-40894662-3	chr19	40894169	40895169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028319)	promoter-TSS (NM_028319)	-34.0	NR_106167	102466881.0		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	138.44	190.3	171.12	103.23	128.76	225.06	202.79	181.73	119.91
Merged-chr5-123865604-3	chr5	123865105	123866105	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030701)	promoter-TSS (NM_030701)	-89.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	139.01	109.67	70.3	94.46	55.05	58.68	135.19	154.76	59.95
Merged-chr17-57249446-3	chr17	57248927	57249927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134125)	promoter-TSS (NM_134125)	-24.0	NM_001242391	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	30.89	23.04	25.9	41.83	22.39	53.85	38.02	24.32	20.61
Merged-chr10-80656586-3	chr10	80656059	80657059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145361, exon 1 of 9)	5' UTR (NM_145361, exon 1 of 9)	512.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	42.33	12.9	29.6	25.64	8.86	20.9	41.19	10.61	16.86
Merged-chr13-70637716-1	chr13	70637216	70638216	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144837)	promoter-TSS (NM_144837)	-82.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	149.31	111.97	135.97	171.38	104.5	137.45	156.32	112.31	77.44
Merged-chr5-134532594-3	chr5	134532085	134533085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	19849.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	113.27	91.24	57.35	93.11	55.05	54.66	63.37	81.8	29.35
Merged-chr12-84193123-3	chr12	84192636	84193636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	CpG	879.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	340.94	270.02	308.93	261.79	247.25	213.0	221.8	219.31	208.59
Merged-chr5-140731239-3	chr5	140730730	140731730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	7103.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	57.21	47.46	37.0	64.1	33.59	40.19	30.63	30.07	15.61
Merged-chr11-100319847-3	chr11	100319353	100320353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011508)	promoter-TSS (NM_011508)	-96.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	315.2	142.38	172.04	319.14	177.27	207.38	235.53	221.97	140.52
Merged-chr6-113237720-3	chr6	113237184	113238184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026849)	promoter-TSS (NM_026849)	-159.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	105.83	77.87	109.14	84.34	70.44	90.02	101.39	84.01	69.95
Merged-chr11-61175278-3	chr11	61174772	61175772	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	-213.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	165.32	146.53	96.2	154.51	146.48	92.44	129.91	127.34	97.43
Merged-chr5-52833988-3	chr5	52833494	52834494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	-141.0	NM_024213	52206.0	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	60.64	64.05	39.77	51.95	61.11	74.75	73.93	39.35	33.72
Merged-chr14-102976084-3	chr14	102975583	102976583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177715)	TTS (NM_177715)	6549.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	88.67	76.95	55.5	78.94	63.45	63.5	74.99	77.82	41.84
Merged-chr8-13785765-5	chr8	13785276	13786276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025924, exon 1 of 9)	exon (NM_025924, exon 1 of 9)	161.0	NM_025924	67031.0	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	132.72	131.32	81.4	147.09	118.03	127.8	199.62	81.8	91.18
Merged-chr17-83215146-3	chr17	83214635	83215635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134117)	promoter-TSS (NM_134117)	-148.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	95.53	75.11	126.72	90.41	80.24	100.47	129.91	86.66	78.69
Merged-chr1-154006260-3	chr1	154005736	154006736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	106307.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	54.35	51.15	40.7	65.45	50.85	38.58	30.63	34.49	38.1
Merged-chr5-96917069-3	chr5	96916566	96917566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4206.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	104.11	111.51	49.95	87.71	52.25	65.11	68.65	102.58	98.68
Merged-chr3-19894776-3	chr3	19894277	19895277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027985)	promoter-TSS (NR_027985)	-94.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	54.35	37.32	52.72	39.13	25.19	32.96	66.54	24.32	31.85
Merged-chr12-87472319-3	chr12	87471833	87472833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025507)	promoter-TSS (NM_025507)	-34.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	159.6	227.63	123.02	155.86	210.86	138.25	176.38	179.52	88.68
Merged-chr7-88207596-3	chr7	88207104	88208104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70481.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	93.24	99.99	58.27	87.04	69.98	69.13	94.0	99.05	63.08
Merged-chr5-93268148-3	chr5	93267658	93268658	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007635, intron 1 of 7)	CpG	585.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	204.8	225.32	181.29	243.57	262.64	217.83	215.46	224.62	120.53
Merged-chr9-107624746-3	chr9	107624238	107625238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	10604.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	25.17	22.12	40.7	26.99	18.66	41.8	22.18	43.77	39.35
Merged-chr11-69366644-3	chr11	69366132	69367132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	2794.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	77.23	84.32	81.4	86.36	58.78	73.95	121.46	111.43	85.56
Merged-chr6-43265594-3	chr6	43265136	43266136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133674)	promoter-TSS (NM_133674)	-8.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	81.8	90.77	61.97	88.39	86.3	61.89	57.03	43.33	18.11
Merged-chr13-12468663-3	chr13	12468151	12469151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6913.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	203.65	219.33	123.02	201.74	225.79	156.74	212.29	270.16	115.54
Merged-chr4-59083618-3	chr4	59083112	59084112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48456.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	6.86	8.29	0.0	8.1	6.53	5.63	3.17	3.1	2.5
Merged-chr8-126616037-3	chr8	126615518	126616518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22582.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	20.02	19.35	9.25	26.99	14.93	32.15	25.35	25.65	23.11
Merged-chr11-75651933-3	chr11	75651445	75652445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080774)	promoter-TSS (NM_001080774)	-205.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	390.14	323.93	255.29	342.76	282.7	213.0	243.98	322.34	173.62
Merged-chr8-70766905-3	chr8	70766404	70767404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023065)	promoter-TSS (NM_023065)	-241.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	330.65	238.23	200.71	280.01	226.26	237.92	282.0	380.26	176.74
Merged-chr12-87407068-3	chr12	87406569	87407569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-18714.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	70.36	50.69	59.2	77.59	48.98	86.01	96.11	96.83	54.33
Merged-chr3-135731458-3	chr3	135730955	135731955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39908.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.29	3.23	1.85	11.47	2.8	1.61	3.17	3.98	0.62
Merged-chr8-18595028-3	chr8	18594515	18595515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173189)	promoter-TSS (NM_173189)	-116.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	76.66	68.2	85.1	72.87	87.7	92.44	97.17	99.49	37.47
Merged-chrX-12159006-3	chrX	12158503	12159503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	1343.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	82.38	97.69	54.57	89.74	71.84	80.38	73.93	79.15	50.59
Merged-chr5-96162240-1	chr5	96161740	96162740	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178854)	promoter-TSS (NM_178854)	-250.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	164.18	126.25	146.14	188.25	138.09	163.97	156.32	96.39	103.67
Merged-chr11-103361584-3	chr11	103361102	103362102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 2 of 17)	intron (NM_001205236, intron 2 of 17)	2090.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	170.47	160.35	132.27	154.51	165.14	146.29	172.16	199.86	91.81
Merged-chr14-40919700-3	chr14	40919206	40920206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	-26741.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	30.89	44.7	27.75	41.83	28.46	34.56	17.96	32.28	34.97
Merged-chr15-80561314-3	chr15	80560812	80561812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163189)	promoter-TSS (NM_001163189)	-842.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	20.02	16.13	8.32	13.49	20.06	17.68	22.18	8.84	6.25
Merged-chr1-152809948-3	chr1	152809340	152810340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	B4|SINE|B4	9687.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	118.99	120.73	92.5	106.61	84.44	100.47	109.84	139.28	105.55
Merged-chr5-148486370-3	chr5	148485875	148486875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65298.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	201.36	151.14	123.02	237.5	183.8	124.59	147.87	153.43	63.08
Merged-chr5-90504918-3	chr5	90504401	90505401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007423, intron 10 of 14)	intron (NM_007423, intron 10 of 14)	-14048.0	NM_145146	280662.0	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	6.29	8.29	11.1	5.4	7.46	6.43	6.34	7.52	3.75
Merged-chr2-5951041-3	chr2	5950547	5951547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081132)	promoter-TSS (NM_001081132)	-422.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	131.0	115.66	46.25	103.91	64.38	73.95	128.85	136.19	54.96
Merged-chr12-59131826-1	chr12	59131326	59132326	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	373.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	404.44	304.12	285.81	333.99	291.1	266.86	367.55	304.21	217.96
Merged-chr3-79234250-3	chr3	79233743	79234743	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21324.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	66.36	74.19	57.35	30.36	21.46	17.68	49.64	42.45	15.61
Merged-chr15-57793177-3	chr15	57792615	57793615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	98448.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	54.35	58.06	47.17	58.7	29.86	66.71	74.99	68.54	52.46
Merged-chr13-34667403-3	chr13	34666901	34667901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105041)	TTS (NR_105041)	14478.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	38.33	59.9	25.9	36.43	44.32	35.37	36.97	38.03	27.48
Merged-chr5-135613046-3	chr5	135612541	135613541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19613.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	36.61	23.5	5.55	63.42	40.59	62.7	38.02	19.9	11.24
Merged-chr1-97580411-3	chr1	97579902	97580902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	81274.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	11.44	9.22	0.0	6.75	1.4	4.82	7.39	2.21	0.62
Merged-chr7-122206335-3	chr7	122205839	122206839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13157.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	89.24	60.36	54.57	68.82	38.25	99.67	81.33	48.2	53.71
Merged-chr1-95590283-3	chr1	95589778	95590778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	77316.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	66.93	88.47	42.55	68.15	66.71	58.68	48.58	75.17	45.59
Merged-chr8-94811960-3	chr8	94811461	94812461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011332)	TTS (NM_011332)	1508.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	24.03	23.04	31.45	18.89	12.13	35.37	19.01	20.34	33.72
Merged-chr17-71250881-3	chr17	71250382	71251382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46228.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	69.79	70.04	44.4	141.69	112.9	95.65	52.81	46.43	19.98
Merged-chr7-43921303-3	chr7	43920794	43921794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12477.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	144.73	185.7	102.67	124.82	109.16	127.0	121.46	112.31	78.69
Merged-chr8-26885510-3	chr8	26884990	26885990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61067.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	36.04	31.79	37.92	61.4	54.58	53.05	47.53	35.82	24.36
Merged-chr3-96219788-3	chr3	96219311	96220311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-105.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	425.61	480.14	349.63	350.85	352.21	302.22	284.11	374.07	220.46
Merged-chr9-119357525-3	chr9	119357005	119358005	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199568, exon 1 of 20)	5' UTR (NM_001199568, exon 1 of 20)	124.0	NM_001359699	102448.0	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	28.6	14.28	16.65	23.62	18.66	12.86	19.01	14.15	17.49
Merged-chr4-128619190-3	chr4	128618705	128619705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205823)	promoter-TSS (NM_205823)	-586.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	252.28	205.51	148.92	176.1	102.63	82.79	157.37	133.53	86.18
Merged-chr17-47523580-3	chr17	47523075	47524075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	18524.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	92.67	62.67	76.77	83.66	53.65	58.68	54.92	58.37	22.48
Merged-chr10-37112888-3	chr10	37112381	37113381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26045.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	14.87	10.14	11.1	14.17	14.0	15.27	15.84	13.71	16.24
Merged-chr9-15357778-3	chr9	15357274	15358274	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176976)	promoter-TSS (NM_176976)	14.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	152.74	165.88	136.89	136.97	149.75	136.64	132.02	145.92	83.69
Merged-chr16-96192270-3	chr16	96191748	96192748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001492)	promoter-TSS (NM_001001492)	9.0	NM_001001492	385668.0	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	6.86	3.23	14.8	10.8	5.6	9.65	7.39	3.54	3.75
Merged-chr8-25016193-1	chr8	25015693	25016693	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	MIRc|SINE|MIR	729.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	179.62	230.85	184.07	190.27	188.94	121.37	230.25	258.23	151.14
Merged-chr6-49013174-3	chr6	49012670	49013670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13554.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	12.59	15.21	21.27	20.24	20.99	24.92	40.14	24.76	14.99
Merged-chr8-111536523-3	chr8	111536026	111537026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168621)	promoter-TSS (NM_001168621)	-114.0	NM_001168622	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	81.23	62.21	44.4	72.87	37.79	55.46	87.66	38.03	44.97
Merged-chr1-86406497-3	chr1	86405997	86406997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17136.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	137.29	134.55	104.52	148.44	161.41	153.52	108.79	169.79	76.82
Merged-chr2-26916411-3	chr2	26915907	26916907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013678)	promoter-TSS (NM_013678)	-14.0	NM_013678	20931.0	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	293.46	252.05	239.56	310.37	292.97	268.47	259.82	266.63	187.36
Merged-chr17-87107370-3	chr17	87106868	87107868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019654)	promoter-TSS (NM_019654)	-311.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	233.4	187.54	186.84	228.05	160.48	185.68	223.91	198.09	117.41
Merged-chr13-38528003-3	chr13	38527524	38528524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289599)	promoter-TSS (NM_001289599)	-110.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	159.6	147.91	117.47	207.14	169.34	188.89	164.76	89.76	113.66
Merged-chr8-46789608-3	chr8	46789095	46790095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	49850.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	97.25	123.49	89.72	89.74	68.58	81.18	96.11	68.54	54.96
Merged-chr3-116085671-1	chr3	116085171	116086171	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44017.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	12.59	13.82	3.7	16.87	33.12	19.29	39.08	44.22	15.61
Merged-chr9-108290362-3	chr9	108289853	108290853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025449)	promoter-TSS (NM_025449)	-104.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	18.31	14.75	18.5	18.89	19.59	24.92	25.35	18.13	22.48
Merged-chr18-84589752-4	chr18	84589264	84590264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-260.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	245.41	306.42	220.14	219.28	243.05	238.73	232.36	280.33	149.89
Merged-chr1-82316587-3	chr1	82316079	82317079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029777)	promoter-TSS (NM_029777)	0.0	NM_029777	76867.0	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	175.05	216.11	129.49	156.53	189.87	164.78	154.2	167.58	101.17
Merged-chr7-41393395-3	chr7	41392920	41393920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183167)	promoter-TSS (NM_183167)	-41.0	NM_001199330	233168.0	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	64.64	85.71	49.95	71.52	74.64	73.14	83.44	69.42	68.7
Merged-chr11-100344506-3	chr11	100344007	100345007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	10100.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	280.88	255.27	154.47	299.57	235.59	195.32	258.77	305.1	149.26
Merged-chr8-75213106-3	chr8	75212632	75213632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-812.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	19.45	10.14	3.7	26.31	20.06	8.04	28.52	11.05	3.12
Merged-chr8-8661352-3	chr8	8660852	8661852	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010111)	promoter-TSS (NM_010111)	-579.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	12.01	7.37	0.0	16.19	7.0	6.43	8.45	5.75	4.37
Merged-chr10-17522336-3	chr10	17521827	17522827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200901.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	59.49	64.51	44.4	57.35	27.06	49.83	40.14	48.2	47.46
Merged-chr1-4785710-3	chr1	4785218	4786218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033530)	promoter-TSS (NR_033530)	8.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	45.19	52.99	42.55	59.38	54.11	61.89	65.48	29.18	26.23
Merged-chr3-97232531-3	chr3	97232012	97233012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5148.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	76.66	92.16	51.8	58.7	55.05	58.68	69.71	96.83	60.58
Merged-chr1-170953393-3	chr1	170952889	170953889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22682.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	23.45	40.09	32.37	64.77	33.12	60.28	74.99	42.45	61.2
Merged-chr11-83577229-3	chr11	83576726	83577726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011338, intron 1 of 3)	intron (NM_011338, intron 1 of 3)	1410.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	120.13	111.05	55.5	103.91	72.78	98.06	85.55	72.52	69.95
Merged-chr11-29247406-3	chr11	29246894	29247894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025740)	promoter-TSS (NM_025740)	-122.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	21.74	25.34	7.4	22.94	20.99	26.53	10.56	11.94	8.12
Merged-chr6-89632496-3	chr6	89631988	89632988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11500.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	42.33	35.48	25.9	33.06	12.13	14.47	29.57	21.67	21.23
Merged-chr4-126541039-3	chr4	126540525	126541525	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7567.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	15.45	21.2	17.57	29.69	19.59	23.31	25.35	17.69	8.74
Merged-chr15-27709453-3	chr15	27708970	27709970	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27928.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	56.63	37.78	18.5	42.51	33.12	45.82	35.91	30.07	21.23
Merged-chr1-93069480-3	chr1	93068971	93069971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 9 of 46)	intron (NM_001294150, intron 9 of 46)	13009.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	167.04	106.9	68.45	159.23	94.23	118.16	121.46	90.64	81.19
Merged-chr7-111083151-3	chr7	111082652	111083652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040131)	promoter-TSS (NM_001040131)	-122.0	NM_013507	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	209.94	157.59	139.67	201.74	127.36	160.76	160.54	151.66	113.04
Merged-chr8-84687865-3	chr8	84687363	84688363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	-1.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	102.4	85.71	99.89	97.16	71.84	103.69	108.79	59.69	92.43
Merged-chr6-38975035-3	chr6	38974529	38975529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	56043.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	65.21	59.9	49.95	45.21	38.72	72.34	80.27	63.23	49.96
Merged-chr2-136936602-2	chr2	136936094	136937094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	37243.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	24.03	32.72	27.75	41.83	51.32	61.09	31.69	26.09	42.47
Merged-chr17-10840292-3	chr17	10839794	10840794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016694)	promoter-TSS (NM_016694)	-65.0	NM_001317726	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	244.27	214.73	127.64	218.61	206.66	102.08	158.43	144.59	73.69
Merged-chr17-27858272-3	chr17	27857753	27858753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	RSINE1|SINE|B4	1746.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	76.66	54.83	41.62	93.11	44.32	46.62	160.54	131.32	64.33
Merged-chr11-120071265-3	chr11	120070771	120071771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009734, intron 13 of 25)	intron (NM_009734, intron 13 of 25)	15556.0	NM_009734	12009.0	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	29.17	11.06	18.5	26.31	11.66	16.08	23.24	10.61	7.49
Merged-chr17-32113687-3	chr17	32113167	32114167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22244.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	12.01	5.53	0.92	81.64	59.71	28.94	62.31	28.3	12.49
Merged-chr5-143990259-3	chr5	143989765	143990765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177682, intron 14 of 14)	intron (NM_177682, intron 14 of 14)	24588.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	42.33	30.41	37.92	35.09	26.12	27.33	41.19	43.77	12.49
Merged-chr17-34347775-3	chr17	34347272	34348272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3127.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	325.5	221.18	157.24	82.32	56.91	24.11	110.9	108.77	37.47
Merged-chr7-27490838-3	chr7	27490338	27491338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018820)	TTS (NM_018820)	3885.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	99.54	67.74	78.62	76.92	72.78	96.45	95.06	83.13	60.58
Merged-chr9-40784205-3	chr9	40783717	40784717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133733)	TTS (NM_133733)	-17056.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	63.5	96.76	70.3	99.18	60.65	69.13	109.84	136.63	98.05
Merged-chr5-4530897-2	chr5	4530410	4531410	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227306.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	18.88	36.86	19.42	56.68	71.84	90.83	50.7	40.68	67.45
Merged-chr13-83523802-1	chr13	83523302	83524302	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	146.0	NM_001347573	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	5.15	2.76	3.7	7.42	2.8	1.61	3.17	0.88	3.75
Merged-chr13-43765435-3	chr13	43764935	43765935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19677.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	136.15	86.17	34.22	236.15	125.49	106.9	99.28	105.24	42.47
Merged-chr14-50357802-3	chr14	50357314	50358314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205819)	promoter-TSS (NM_205819)	-100.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	9.15	19.81	29.6	10.12	9.33	16.88	55.98	27.41	36.85
Merged-chr2-128700919-1	chr2	128700419	128701419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2004.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	61.78	92.62	65.67	114.7	133.89	90.83	120.41	130.44	60.58
Merged-chr11-116592604-3	chr11	116592139	116593139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NR_033223	11298.0	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	8.58	7.37	9.25	8.1	1.87	10.45	4.22	4.42	6.87
Merged-chr13-13889629-3	chr13	13889144	13890144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65030.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	8.58	3.23	11.1	8.1	3.27	9.65	9.51	7.52	3.75
Merged-chr11-89004001-2	chr11	89003462	89004462	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	4559.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	102.97	99.99	66.6	121.45	119.43	110.12	72.88	91.97	41.22
Merged-chr3-88951095-3	chr3	88950583	88951583	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-801.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	334.08	252.51	222.91	248.3	188.0	222.65	258.77	205.61	115.54
Merged-chr4-59363246-3	chr4	59362740	59363740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75393.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	171.62	185.24	102.67	196.34	153.48	172.81	126.74	134.42	52.46
Merged-chr3-106545761-3	chr3	106545262	106546262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1863.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	147.59	182.01	86.02	136.97	121.29	106.9	196.45	204.72	117.41
Merged-chr9-45299441-3	chr9	45298920	45299920	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19680.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	390.71	283.84	145.22	292.83	230.46	186.48	314.74	336.05	165.5
Merged-chr2-71389636-3	chr2	71389134	71390134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026115, intron 1 of 10)	intron (NM_026115, intron 1 of 10)	374.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	446.2	469.54	278.41	475.0	495.43	373.76	440.43	614.17	279.79
Merged-chr9-35055845-3	chr9	35055341	35056341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-60887.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	136.72	167.73	132.27	159.91	125.02	132.63	134.14	194.11	99.92
Merged-chr5-140116184-3	chr5	140115678	140116678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	58740.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	128.14	107.36	90.65	135.62	105.9	100.47	113.01	115.41	87.43
Merged-chr14-26970599-3	chr14	26970104	26971104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145221)	promoter-TSS (NM_145221)	-53.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	176.76	122.11	115.62	184.2	116.16	109.32	182.72	135.3	79.94
Merged-chr10-42761498-3	chr10	42760995	42761995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153055)	promoter-TSS (NM_153055)	-1.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	220.81	136.85	173.89	184.2	123.62	98.06	168.99	92.41	93.05
Merged-chr8-71294216-3	chr8	71293700	71294700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	21486.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	127.0	122.11	81.4	96.48	99.37	95.65	151.03	170.23	75.57
Merged-chr17-64332160-3	chr17	64331648	64332648	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144859)	promoter-TSS (NM_144859)	-265.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	122.99	111.05	113.77	93.79	106.36	94.04	103.51	112.31	68.7
Merged-chr6-92940994-1	chr6	92940494	92941494	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	412.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.43	5.53	9.25	43.86	46.65	28.13	1.06	0.88	1.25
Merged-chr13-52236346-3	chr13	52235835	52236835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139594.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	91.53	70.96	49.95	87.04	68.58	40.19	92.94	70.3	40.59
Merged-chrX-21522680-3	chrX	21522199	21523199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38075.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	31.46	33.18	34.22	19.57	14.93	12.06	28.52	25.2	9.99
Merged-chr11-94602032-3	chr11	94601518	94602518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153807)	promoter-TSS (NM_153807)	-232.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	212.8	141.92	109.14	198.37	144.62	131.02	163.71	156.53	87.43
Merged-chr7-43353335-3	chr7	43352853	43353853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145581, intron 5 of 9)	intron (NM_145581, intron 5 of 9)	2012.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	75.51	69.58	67.52	47.9	37.79	57.87	81.33	50.41	43.72
Merged-chr11-75732805-3	chr11	75732326	75733326	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009536)	promoter-TSS (NM_009536)	-61.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	116.13	115.66	107.29	118.08	96.57	127.0	79.21	76.05	61.83
Merged-chr4-128980545-3	chr4	128980065	128981065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	-12659.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	104.11	109.67	104.52	130.9	78.37	120.57	110.9	115.85	71.82
Merged-chr10-77964216-3	chr10	77963702	77964702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 4 of 33)	intron (NM_138301, intron 4 of 33)	5670.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	173.9	136.39	89.72	123.47	90.5	129.41	149.98	194.11	66.2
Merged-chr5-66106125-3	chr5	66105624	66106624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7945.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	214.52	212.42	109.14	213.21	150.22	155.13	223.91	256.9	174.24
Merged-chr1-146968139-3	chr1	146967628	146968628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	470441.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	14.87	23.96	10.17	16.19	18.66	23.31	17.96	12.38	19.98
Merged-chr17-69085678-3	chr17	69085184	69086184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	10007.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	13.16	13.82	0.0	8.77	2.33	0.0	14.79	5.75	3.75
Merged-chrX-106011901-3	chrX	106011416	106012416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190409)	promoter-TSS (NM_001190409)	-17.0	NM_025952	67075.0	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	81.23	73.26	86.02	80.29	90.04	70.73	107.73	111.43	53.71
Merged-chr3-21633980-3	chr3	21633476	21634476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-442676.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	14.3	17.05	17.57	14.84	23.33	20.09	19.01	25.2	8.74
Merged-chr1-86509604-3	chr1	86509127	86510127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16930.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	20.02	5.07	1.85	16.19	8.4	12.06	7.39	2.65	11.24
Merged-chr4-120825265-3	chr4	120824782	120825782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357194)	promoter-TSS (NM_001357194)	-73.0	NM_001357194	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	467.94	430.37	274.71	410.9	385.8	299.81	382.34	357.71	232.95
Merged-chr14-64943960-3	chr14	64943448	64944448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	ID4_|SINE|ID	5909.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	62.35	71.42	50.87	35.76	27.52	57.87	33.8	41.12	44.97
Merged-chr18-11352536-3	chr18	11352031	11353031	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-280745.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	98.39	74.65	30.52	155.19	201.53	131.82	29.57	25.2	16.24
Merged-chr8-46844805-3	chr8	46844316	46845316	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 6 of 7)	intron (NR_152560, intron 6 of 7)	105071.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	196.21	143.3	139.67	181.5	79.31	174.42	143.64	161.39	114.91
Merged-chr11-11781922-3	chr11	11781448	11782448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27014.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	24.03	10.6	3.7	6.07	7.0	6.43	17.96	7.52	6.25
Merged-chr17-48418435-3	chr17	48417942	48418942	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009694)	TTS (NM_009694)	7992.0	NM_001357904	106821.0	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	29.75	31.33	21.27	35.76	23.33	32.96	22.18	27.86	28.73
Merged-chr1-138158596-3	chr1	138158124	138159124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	16502.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	220.24	252.05	123.02	194.32	166.08	120.57	157.37	212.24	99.3
Merged-chr17-83666760-3	chr17	83666259	83667259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34864.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	50.34	62.67	50.87	59.38	58.78	54.66	51.75	103.47	56.21
Merged-chr17-5935034-3	chr17	5934529	5935529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6251.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	81.23	76.95	65.67	104.58	72.31	98.87	88.72	127.34	73.69
Merged-chr12-111675281-3	chr12	111674769	111675769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2836.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	98.97	105.06	36.07	80.29	56.45	78.77	120.41	152.55	57.46
Merged-chr2-24345261-3	chr2	24344762	24345762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159562)	promoter-TSS (NM_001159562)	-29.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	80.09	94.92	85.1	70.17	71.84	60.28	82.38	86.66	57.46
Merged-chr10-89443931-3	chr10	89443427	89444427	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	40.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	315.2	366.32	246.04	381.22	493.1	333.57	302.07	393.97	177.37
Merged-chr7-12478304-3	chr7	12477832	12478832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039951)	promoter-TSS (NM_001039951)	27.0	NM_026112	67370.0	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	51.48	74.19	54.57	54.65	71.38	61.89	34.85	42.45	34.35
Merged-chr4-117156058-3	chr4	117155581	117156581	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009098)	promoter-TSS (NM_009098)	51.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	129.28	94.46	123.94	165.98	161.41	143.88	140.47	123.81	84.31
Merged-chr5-64885249-3	chr5	64884760	64885760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47439.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	94.39	74.19	84.17	93.79	61.11	68.32	115.12	131.77	59.95
Merged-chr9-124425136-3	chr9	124424631	124425631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027950)	TTS (NR_027950)	1344.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	349.52	238.23	193.32	302.27	225.79	185.68	333.75	354.18	157.38
Merged-chr9-21320723-3	chr9	21320221	21321221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199186)	promoter-TSS (NM_001199186)	2.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	116.13	91.24	61.97	112.68	114.29	127.0	134.14	127.79	63.08
Merged-chr9-4319551-3	chr9	4319069	4320069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164574, intron 2 of 2)	intron (NM_001164574, intron 2 of 2)	9753.0	NM_026962	69149.0	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	29.75	31.79	22.2	47.9	34.52	27.33	40.14	42.45	15.61
Merged-chr17-70967812-3	chr17	70967312	70968312	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22704.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	380.99	233.62	180.37	304.3	179.14	199.34	313.69	327.65	161.75
Merged-chr12-75818269-3	chr12	75817794	75818794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-24.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	50.91	41.93	37.92	73.54	58.31	40.19	50.7	31.39	16.24
Merged-chr4-129068278-3	chr4	129067786	129068786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10015.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	126.42	106.9	91.57	105.93	83.04	104.49	127.8	139.72	98.68
Merged-chr6-115676598-3	chr6	115676093	115677093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356334)	promoter-TSS (NM_001356334)	42.0	NM_001356333	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	389.0	399.96	293.21	386.61	365.74	376.98	324.25	352.85	252.93
Merged-chr9-116077653-3	chr9	116077160	116078160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	97703.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.16	11.98	9.25	16.87	14.46	26.53	12.67	10.17	7.49
Merged-chr11-107323436-3	chr11	107322954	107323954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-134073.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	161.32	127.18	84.17	184.2	132.95	100.47	152.09	169.35	76.82
Merged-chr12-108269813-1	chr12	108269313	108270313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159910, intron 1 of 5)	intron (NM_001159910, intron 1 of 5)	5604.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	6.29	1.38	1.85	5.4	0.47	1.61	2.11	0.88	3.75
Merged-chr13-56613724-3	chr13	56613231	56614231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	4145.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	81.23	88.47	70.3	68.82	64.84	84.4	102.45	107.45	61.83
Merged-chr8-121851143-3	chr8	121850626	121851626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21557.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	12.59	15.21	1.85	20.92	15.39	0.0	16.9	6.19	3.75
Merged-chr14-63123815-3	chr14	63123313	63124313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	1351.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	251.7	291.68	140.59	330.61	240.25	221.85	299.96	389.99	180.49
Merged-chr4-9605617-3	chr4	9605125	9606125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177854, intron 3 of 11)	Tigger7|DNA|TcMar-Tigger	38092.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	21.17	12.9	9.25	18.22	12.13	17.68	9.51	8.4	10.62
Merged-chr6-34476225-3	chr6	34475728	34476728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007563)	promoter-TSS (NM_007563)	-128.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	69.22	70.04	40.7	44.53	49.45	51.44	73.93	66.33	26.85
Merged-chr7-25688205-3	chr7	25687641	25688641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011577, exon 1 of 7)	exon (NM_011577, exon 1 of 7)	1139.0	NM_011577	21803.0	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	235.11	272.32	236.79	234.13	266.38	268.47	283.06	364.35	182.99
Merged-chr13-9454550-3	chr13	9454045	9455045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	178020.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	90.38	87.55	72.15	118.08	66.71	64.3	80.27	99.93	49.34
Merged-chr17-45573313-3	chr17	45572797	45573797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008302)	promoter-TSS (NM_008302)	-36.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	318.63	278.31	246.96	322.51	270.57	189.69	219.69	282.54	209.22
Merged-chr13-60738640-3	chr13	60738123	60739123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	47741.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	52.63	61.28	42.55	85.01	58.31	56.27	47.53	60.13	35.6
Merged-chr7-140102356-3	chr7	140101826	140102826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286217, exon 1 of 6)	exon (NM_001286217, exon 1 of 6)	115.0	NM_001286217	69064.0	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	28.03	7.83	10.17	25.64	14.0	10.45	26.4	17.24	13.74
Merged-chr4-56070869-3	chr4	56070382	56071382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-538407.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	20.59	21.66	12.95	16.19	19.59	18.49	12.67	12.38	16.86
Merged-chr5-21786738-3	chr5	21786240	21787240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011188, exon 2 of 13)	exon (NM_011188, exon 2 of 13)	1457.0	NM_011188	19181.0	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	224.25	247.44	140.59	153.84	172.14	134.23	192.23	189.69	114.91
Merged-chr2-48949336-3	chr2	48948828	48949828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	-61.0	NR_149356	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	137.29	135.47	115.62	118.08	136.69	114.14	142.59	153.87	87.43
Merged-chr8-33653135-1	chr8	33652635	33653635	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010344)	promoter-TSS (NM_010344)	-103.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	65.79	70.5	82.32	61.4	80.71	84.4	306.29	329.41	190.48
Merged-chr13-101841439-3	chr13	101840932	101841932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73215.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	112.12	103.22	52.72	106.61	91.44	108.51	151.03	160.95	83.06
Merged-chr14-55697452-3	chr14	55696938	55697938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-15621.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	89.24	82.02	65.67	95.81	88.17	89.22	142.59	188.36	60.58
Merged-chr2-33918942-3	chr2	33918443	33919443	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30997.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	7.44	7.83	9.25	41.83	25.19	31.35	38.02	41.12	23.11
Merged-chr16-91438243-3	chr16	91437724	91438724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26880.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	74.37	37.32	43.47	67.47	41.05	60.28	66.54	38.47	30.6
Merged-chr13-47014849-3	chr13	47014341	47015341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175340)	promoter-TSS (NM_175340)	9.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	48.62	21.2	12.02	49.25	42.92	20.09	50.7	29.63	13.74
Merged-chr13-60897522-3	chr13	60897009	60898009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145801)	promoter-TSS (NM_001145801)	-62.0	NM_001145801	13025.0	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	80.09	99.07	87.87	82.32	91.9	82.79	102.45	112.31	58.08
Merged-chr5-135184645-3	chr5	135184162	135185162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2661.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	17.16	37.32	37.92	31.04	27.06	55.46	48.58	44.66	33.72
Merged-chr4-132945629-4	chr4	132945104	132946104	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23053.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	183.06	103.68	85.1	248.3	165.61	143.07	194.34	217.1	121.16
Merged-chr11-11785711-3	chr11	11785208	11786208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23254.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	25.74	32.25	37.92	23.62	18.19	32.15	22.18	15.48	16.24
Merged-chr16-91478320-3	chr16	91477831	91478831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6884.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	104.69	58.52	68.45	114.03	55.51	77.97	100.34	90.2	77.44
Merged-chr18-67245686-5	chr18	67245130	67246130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357518, exon 1 of 11)	5' UTR (NM_001357518, exon 1 of 11)	200.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	286.03	345.13	191.47	219.28	249.58	223.45	268.27	319.24	190.48
Merged-chr15-65787146-3	chr15	65786655	65787655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356582, exon 1 of 23)	5' UTR (NM_001356582, exon 1 of 23)	135.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	297.47	296.28	184.07	280.68	293.9	177.64	223.91	193.23	128.03
Merged-chr9-20651991-3	chr9	20651501	20652501	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023371)	promoter-TSS (NM_023371)	-129.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	32.61	45.62	32.37	31.71	33.59	24.11	41.19	30.51	17.49
Merged-chr5-17876873-3	chr5	17876379	17877379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	L2|LINE|L2	12080.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	34.9	62.67	27.75	62.75	57.38	73.95	48.58	35.82	37.47
Merged-chr6-52699219-3	chr6	52698709	52699709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14520.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	12.59	16.13	22.2	18.89	10.73	11.25	10.56	31.84	20.61
Merged-chr10-83184124-3	chr10	83183619	83184619	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	MIR|SINE|MIR	153698.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	9.72	6.91	0.0	20.24	20.06	9.65	4.22	14.15	6.25
Merged-chr5-150594602-3	chr5	150594107	150595107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133898)	promoter-TSS (NM_133898)	-82.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	474.23	475.53	444.9	441.94	384.4	330.36	437.26	460.3	261.05
Merged-chr14-20834305-3	chr14	20833811	20834811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	71.51	46.08	11.1	119.43	89.1	29.74	51.75	63.67	24.98
Merged-chr11-17001144-3	chr11	17000639	17001639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	RMER19C|LTR|ERVK	7579.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	135.0	192.15	146.14	140.34	149.28	134.23	132.02	164.04	144.89
Merged-chr5-110176922-3	chr5	110176393	110177393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008146)	promoter-TSS (NM_008146)	36.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	279.16	267.72	163.72	262.47	172.14	176.83	284.11	267.51	128.65
Merged-chr11-117947162-1	chr11	117946662	117947662	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22204.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	81.8	64.51	58.27	81.64	46.65	78.77	81.33	68.54	57.46
Merged-chr2-160873081-3	chr2	160872571	160873571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177263)	promoter-TSS (NM_177263)	-81.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	97.82	51.61	68.45	101.21	61.11	76.36	99.28	57.48	40.59
Merged-chr17-66077132-3	chr17	66076607	66077607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025572)	promoter-TSS (NM_001025572)	-61.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	155.6	165.42	137.82	199.72	195.93	137.45	180.61	150.78	105.55
Merged-chr10-54119458-3	chr10	54118933	54119933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43511.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	169.9	207.81	81.4	175.43	126.89	85.2	145.75	132.65	93.05
Merged-chr10-117941115-3	chr10	117940616	117941616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15657.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	158.46	193.53	74.92	212.54	198.73	108.51	332.7	426.25	117.41
Merged-chr6-55037975-3	chr6	55037451	55038451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_180678)	promoter-TSS (NM_180678)	-50.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	122.42	111.51	128.57	101.88	113.36	138.25	154.2	116.73	76.19
Merged-chr7-102210304-3	chr7	102209813	102210813	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022979)	promoter-TSS (NM_022979)	-22.0	NM_001291358	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	415.31	287.07	156.32	350.18	274.77	176.03	274.61	228.16	119.91
Merged-chr18-63864420-1	chr18	63863920	63864920	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155725.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	7.44	5.99	4.62	9.45	0.47	0.8	5.28	4.42	7.49
Merged-chr17-35813373-3	chr17	35812882	35813882	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8331.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	88.1	64.05	49.95	102.56	59.25	81.18	91.89	83.57	44.34
Merged-chr12-83597221-3	chr12	83596718	83597718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183154)	promoter-TSS (NM_183154)	4.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	54.35	45.16	60.12	60.72	53.18	68.32	86.61	49.08	28.1
Merged-chr4-46077050-3	chr4	46076547	46077547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021883, intron 2 of 9)	intron (NM_021883, intron 2 of 9)	37825.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	12.01	8.75	16.65	22.27	16.33	36.97	6.34	4.42	6.25
Merged-chr8-107552458-3	chr8	107551943	107552943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 17 of 23)	intron (NM_025830, intron 17 of 23)	1199.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	7.44	4.15	9.25	13.49	3.27	1.61	5.28	3.98	8.12
Merged-chr11-106487877-3	chr11	106487378	106488378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023913)	promoter-TSS (NM_023913)	-82.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	195.07	129.48	134.12	196.34	118.49	163.97	209.12	153.43	94.93
Merged-chr4-105162850-3	chr4	105162337	105163337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	MIRc|SINE|MIR	5490.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	55.49	35.02	29.6	26.99	20.06	26.53	30.63	38.03	14.99
Merged-chr17-26939652-3	chr17	26939164	26940164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026307)	promoter-TSS (NM_026307)	-126.0	NM_026307	67675.0	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	235.69	208.74	187.77	269.21	215.06	186.48	234.47	234.79	130.53
Merged-chr19-4121578-3	chr19	4121078	4122078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276284)	promoter-TSS (NM_001276284)	-3.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	224.25	219.33	168.34	186.9	140.89	196.12	179.55	208.7	144.89
Merged-chr7-12803631-3	chr7	12803141	12804141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026046)	TTS (NM_026046)	15219.0	NM_026046	67230.0	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	32.61	31.79	16.65	59.38	48.52	48.23	51.75	44.22	21.86
Merged-chr2-151973488-3	chr2	151972985	151973985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-91.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	68.65	38.25	15.72	58.03	39.19	27.33	53.87	32.28	15.61
Merged-chr3-10342716-3	chr3	10342233	10343233	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025512, intron 6 of 7)	RLTR20D|LTR|ERVK	-7077.0	NM_001010834	241877.0	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	8.01	12.9	14.8	13.49	11.66	11.25	14.79	8.4	3.75
Merged-chr17-5814064-3	chr17	5813571	5814571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14581.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	65.21	42.39	44.4	63.42	56.91	52.25	32.74	48.64	22.48
Merged-chr19-46506517-3	chr19	46506013	46507013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4865.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	102.4	77.87	86.02	122.8	73.24	112.53	128.85	106.56	73.69
Merged-chrX-12543875-3	chrX	12543390	12544390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-43869.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	21.17	17.05	36.07	13.49	11.66	11.25	33.8	19.9	14.36
Merged-chr2-131909915-3	chr2	131909416	131910416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011170)	promoter-TSS (NM_011170)	-12.0	NM_011170	19122.0	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	18.31	10.14	18.5	36.43	23.33	17.68	21.12	19.9	8.74
Merged-chr3-127769383-3	chr3	127768895	127769895	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	11132.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	113.27	89.39	67.52	85.69	62.05	68.32	73.93	65.0	74.94
Merged-chr2-22774348-3	chr2	22773846	22774846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019456)	promoter-TSS (NM_019456)	19.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	284.31	270.02	187.77	219.96	211.79	155.13	250.32	239.21	198.6
Merged-chr2-28582840-3	chr2	28582373	28583373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290484, exon 1 of 12)	exon (NM_001290484, exon 1 of 12)	406.0	NM_148928	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	128.71	84.78	54.57	113.35	86.77	114.14	121.46	119.39	75.57
Merged-chr7-68692889-3	chr7	68692371	68693371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56367.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	27.46	23.04	20.35	23.62	13.06	8.04	19.01	22.11	7.49
Merged-chr10-12841656-1	chr10	12841156	12842156	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	B4A|SINE|B4	20079.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.44	8.29	3.7	11.47	6.06	8.84	3.17	5.75	2.5
Merged-chr15-97942760-3	chr15	97942277	97943277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21452.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	58.92	58.06	54.57	35.09	36.85	65.91	73.93	52.18	42.47
Merged-chr10-49074923-1	chr10	49074423	49075423	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	713014.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	4.0	5.99	3.7	16.87	4.2	12.86	6.34	2.21	1.25
Merged-chr14-67272534-3	chr14	67272028	67273028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360202, intron 6 of 15)	intron (NM_001360202, intron 6 of 15)	37884.0	NM_001360202	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	10.87	5.07	0.0	12.82	8.86	6.43	11.62	6.63	6.87
Merged-chr12-110606348-3	chr12	110605844	110606844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030238, intron 1 of 76)	Lx7|LINE|L1	4949.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	26.31	46.54	12.02	20.24	20.99	25.72	27.46	36.26	34.35
Merged-chr15-97816816-1	chr15	97816316	97817316	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1953.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.29	1.84	6.47	23.62	23.33	9.65	12.67	4.42	2.5
Merged-chr14-63130827-3	chr14	63130317	63131317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	8355.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	311.2	367.24	195.17	364.35	380.67	249.17	328.47	398.83	196.73
Merged-chr7-105640402-3	chr7	105639862	105640862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029802)	promoter-TSS (NM_029802)	54.0	NM_029802	76932.0	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	213.95	210.58	149.84	213.89	177.27	152.72	183.78	167.14	105.55
Merged-chr19-46057154-3	chr19	46056649	46057649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346801, intron 1 of 13)	CpG	610.0	NM_001081214	226169.0	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	102.97	92.16	131.34	99.18	114.76	132.63	116.18	101.7	79.32
Merged-chr4-95688338-3	chr4	95687829	95688829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	108908.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	32.61	30.41	14.8	24.29	22.86	26.53	42.25	32.28	24.36
Merged-chr14-76097444-3	chr14	76096952	76097952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026177, intron 6 of 7)	intron (NM_026177, intron 6 of 7)	13363.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	27.46	24.88	29.6	26.31	31.26	31.35	38.02	34.49	39.35
Merged-chr6-91706263-3	chr6	91705764	91706764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	22197.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	100.68	68.66	87.87	76.24	38.25	25.72	72.88	75.61	36.22
Merged-chr3-87566304-3	chr3	87565789	87566789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40711.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	6.86	4.15	0.0	8.77	4.2	4.82	49.64	39.35	26.85
Merged-chr7-24316724-3	chr7	24316214	24317214	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199321)	promoter-TSS (NM_001199321)	-48.0	NM_001199321	22756.0	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	28.6	31.33	20.35	29.69	19.59	56.27	32.74	27.41	30.6
Merged-chr7-16406195-3	chr7	16405713	16406713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	5017.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	90.38	106.44	91.57	89.06	100.3	181.66	102.45	83.57	83.69
Merged-chr19-29385121-3	chr19	29384622	29385622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 6 of 6)	intron (NM_021893, intron 6 of 6)	17684.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	56.06	49.3	34.22	74.89	47.58	56.27	76.05	75.61	43.72
Merged-chr11-121804840-1	chr11	121804340	121805340	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25378.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	172.19	165.88	144.29	294.18	196.4	241.94	229.19	218.43	123.03
Merged-chr12-80331700-3	chr12	80331207	80332207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59970.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	65.21	54.83	64.75	63.42	55.05	76.36	100.34	83.57	52.46
Merged-chrX-7762641-3	chrX	7762150	7763150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271490)	promoter-TSS (NM_001271490)	-11.0	NM_001271489	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	141.87	131.32	115.62	235.48	211.33	177.64	92.94	118.94	81.19
Merged-chr2-120850578-3	chr2	120850059	120851059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038349)	promoter-TSS (NR_038349)	25.0	NM_080788	140810.0	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	29.17	29.03	41.62	35.76	27.52	46.62	29.57	15.03	17.49
Merged-chr7-102565493-3	chr7	102564990	102565990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009277)	promoter-TSS (NM_009277)	-8.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	58.35	63.13	42.55	64.77	59.71	59.48	63.37	58.37	49.96
Merged-chr10-59323255-3	chr10	59322746	59323746	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316371)	promoter-TSS (NM_001316371)	-50.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	135.58	118.88	119.32	130.9	107.76	95.65	123.57	101.26	94.93
Merged-chr1-171114090-3	chr1	171113587	171114587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7574.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	99.54	86.63	84.17	130.9	98.9	94.04	136.25	132.21	111.17
Merged-chr16-12032674-3	chr16	12032188	12033188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	48575.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	9.72	12.44	9.25	5.4	6.53	14.47	19.01	15.92	6.25
Merged-chr7-127841613-3	chr7	127841102	127842102	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009294)	promoter-TSS (NM_009294)	-206.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	354.1	274.17	242.34	457.46	341.02	257.21	351.71	415.2	202.35
Merged-chr8-77442597-3	chr8	77442060	77443060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-74496.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	188.21	126.72	84.17	224.68	136.22	107.71	152.09	145.03	84.94
Merged-chr2-31141988-3	chr2	31141480	31142480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177649)	promoter-TSS (NM_001177649)	28.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	102.97	66.81	85.1	98.51	81.64	71.54	91.89	75.61	65.58
Merged-chr14-66147768-3	chr14	66147277	66148277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144803, intron 5 of 6)	intron (NM_144803, intron 5 of 6)	6817.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	28.6	19.81	6.47	16.87	17.26	16.08	30.63	12.82	6.87
Merged-chr4-141269283-3	chr4	141268770	141269770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9169.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	41.76	27.19	18.5	57.35	28.92	45.82	57.03	20.34	30.6
Merged-chr12-112897625-3	chr12	112897128	112898128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	22913.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	92.67	66.81	52.72	66.12	34.06	32.96	32.74	18.13	24.36
Merged-chr7-13278726-3	chr7	13278229	13279229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010715)	promoter-TSS (NM_010715)	-8.0	NM_177312	321008.0	Mm.458832	NM_177312	ENSMUSG00000070814	Zswim9	6330408A02Rik	zinc finger SWIM-type containing 9	protein-coding	27.46	26.26	25.9	26.31	18.19	19.29	42.25	25.65	24.98
Merged-chr3-149394025-3	chr3	149393529	149394529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119292.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	17.16	11.98	5.55	14.84	16.33	10.45	26.4	17.24	24.98
Merged-chr13-63007650-3	chr13	63007177	63008177	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 1 of 15)	L1_Mus3|LINE|L1	42784.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.3	9.22	14.8	13.49	3.73	8.84	12.67	4.86	8.74
Merged-chr10-34089640-3	chr10	34089140	34090140	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162937, intron 4 of 6)	intron (NM_001162937, intron 4 of 6)	6879.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	24.6	21.2	17.57	19.57	15.86	5.63	20.07	18.13	13.74
Merged-chr15-59653043-3	chr15	59652567	59653567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	4413.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	95.53	55.75	33.3	86.36	45.25	18.49	77.1	52.18	22.48
Merged-chrY-1293874-3	chrY	1293370	1294370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7257.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	6.86	16.13	22.2	7.42	8.4	16.08	9.51	21.22	18.74
Merged-chr7-30419640-3	chr7	30419156	30420156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011827, intron 1 of 3)	intron (NM_011827, intron 1 of 3)	198.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	294.04	312.87	239.56	337.36	245.85	304.64	326.36	390.43	211.71
Merged-chr7-25632886-3	chr7	25632395	25633395	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007533, intron 5 of 8)	MIRc|SINE|MIR	5271.0	NM_146184	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	44.62	42.85	16.65	51.28	86.3	69.93	45.42	30.95	20.61
Merged-chr18-65502918-3	chr18	65502335	65503335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	RLTR19-int|LTR|ERVK	71838.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	183.63	183.39	111.92	187.57	103.56	143.07	70.76	72.96	52.46
Merged-chr5-65832395-3	chr5	65831879	65832879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31190.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	108.12	96.3	86.95	81.64	69.51	61.89	72.88	93.74	41.84
Merged-chr5-43847725-3	chr5	43847236	43848236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21073.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	45.19	43.77	38.85	49.25	26.59	42.6	40.14	32.72	51.84
Merged-chr15-98677587-3	chr15	98677083	98678083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172612)	promoter-TSS (NM_172612)	-122.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	109.26	84.32	43.47	93.11	61.58	59.48	129.91	100.81	42.47
Merged-chr6-112947340-3	chr6	112946823	112947823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080448)	promoter-TSS (NM_080448)	-57.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	29.17	29.03	24.05	27.66	20.53	30.54	24.29	19.46	22.48
Merged-chr15-103239957-3	chr15	103239480	103240480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002885)	promoter-TSS (NR_002885)	-128.0	NM_001076789	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	252.85	230.39	146.14	198.37	163.74	161.56	201.73	216.66	132.4
Merged-chr17-29399381-3	chr17	29398884	29399884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38470.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	137.29	102.29	89.72	64.1	55.05	68.32	90.83	109.66	61.2
Merged-chr12-117481192-3	chr12	117480691	117481691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35288.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	235.69	233.16	117.47	250.32	174.94	139.06	275.66	231.25	109.92
Merged-chr7-16098476-3	chr7	16097982	16098982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025898)	promoter-TSS (NM_025898)	-98.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	348.38	400.88	262.69	311.72	380.2	229.08	309.46	305.54	174.24
Merged-chr11-69759498-3	chr11	69758986	69759986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-853.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	413.02	300.89	244.19	404.83	266.84	217.02	342.2	387.78	134.27
Merged-chr13-94298621-3	chr13	94298096	94299096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-12765.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	58.92	63.13	12.95	80.29	85.37	59.48	78.16	69.42	28.73
Merged-chr2-43727826-3	chr2	43727335	43728335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20989.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	23.45	29.03	8.32	35.09	30.79	30.54	27.46	38.91	30.6
Merged-chr3-97995011-3	chr3	97994489	97995489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18549.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	109.26	104.6	88.8	134.94	90.97	109.32	90.83	126.9	76.19
Merged-chr1-180641401-3	chr1	180640928	180641928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103182, intron 1 of 14)	CpG	278.0	NR_120498	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	80.09	62.67	57.35	86.36	65.78	80.38	84.49	61.46	46.22
Merged-chr10-42478620-3	chr10	42478227	42479227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145743)	promoter-TSS (NM_145743)	-162.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	117.27	143.76	78.62	116.73	139.02	89.22	123.57	125.13	79.32
Merged-chr1-178342806-3	chr1	178342343	178343343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	-5028.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	76.08	103.22	78.62	92.44	95.63	73.14	96.11	152.55	58.08
Merged-chr8-22699615-3	chr8	22699111	22700111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159774, intron 2 of 21)	intron (NM_001159774, intron 2 of 21)	6972.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	21.17	42.39	29.6	31.71	21.93	48.23	38.02	20.78	34.97
Merged-chr15-79927837-3	chr15	79927361	79928361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144811, intron 2 of 6)	CpG	4785.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	57.21	88.47	68.45	97.83	110.1	85.2	98.23	118.5	55.58
Merged-chr1-151250916-3	chr1	151250373	151251373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-93613.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	178.48	203.21	137.82	209.84	227.66	180.85	211.24	246.73	86.81
Merged-chr15-59599060-3	chr15	59598559	59599559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 6 of 6)	intron (NM_026746, intron 6 of 6)	-49595.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	50.91	31.79	17.57	54.65	47.58	20.9	51.75	45.1	18.11
Merged-chr6-5103977-3	chr6	5103489	5104489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89957.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	50.91	30.87	34.22	61.4	52.25	55.46	52.81	36.7	27.48
Merged-chr6-77335745-1	chr6	77335245	77336245	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145732, intron 8 of 18)	ORR1E|LTR|ERVL-MaLR	46730.0	NR_045141	70753.0	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	2.86	2.76	9.25	3.37	0.0	5.63	1.06	3.54	6.25
Merged-chr6-118141122-3	chr6	118140612	118141612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1972.0	NM_030165	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	13.73	16.59	8.32	14.84	12.13	17.68	10.56	7.52	6.25
Merged-chr4-99177473-3	chr4	99176990	99177990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16444.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	93.24	91.24	94.35	72.19	57.38	72.34	111.96	78.26	68.7
Merged-chrM-13127-2	chrM	12635	13635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											243.69	196.75	26.82	143.71	51.32	32.15	146.81	58.37	30.6
Merged-chr5-102069428-3	chr5	102068923	102069923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	CpG	498.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	201.93	153.9	202.56	204.44	87.24	151.11	248.2	138.84	121.78
Merged-chr12-81788841-3	chr12	81788348	81789348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7678.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	13.73	3.69	1.85	1.35	2.8	3.22	5.28	6.19	5.0
Merged-chr11-93988092-3	chr11	93987608	93988608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7983.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	365.54	262.65	172.97	188.25	141.35	137.45	167.93	158.3	65.58
Merged-chr17-83645434-3	chr17	83644937	83645937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13542.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	50.91	44.7	49.95	35.09	28.92	65.91	46.47	40.24	44.34
Merged-chr12-3365208-3	chr12	3364716	3365716	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008445)	promoter-TSS (NM_008445)	84.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	17.16	28.57	16.65	34.41	22.39	35.37	64.43	38.91	23.11
Merged-chr17-71133261-3	chr17	71132770	71133770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50262.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	34.9	25.34	24.97	45.21	27.06	38.58	28.52	29.63	21.86
Merged-chr1-16104434-3	chr1	16103918	16104918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011291)	promoter-TSS (NM_011291)	15.0	NM_011291	19989.0	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	89.24	91.24	84.17	74.22	101.7	91.63	113.01	123.36	83.69
Merged-chr5-74632630-1	chr5	74632130	74633130	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159577, intron 2 of 10)	Kanga1c|DNA|TcMar-Tc2	45242.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	1.72	1.38	4.62	5.4	2.8	3.22	2.11	1.77	1.25
Merged-chr1-78607965-3	chr1	78607482	78608482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-49843.0	NM_001136222	74205.0	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	9.15	5.53	9.25	3.37	5.13	3.22	3.17	3.54	1.25
Merged-chr11-116868319-3	chr11	116867833	116868833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	14333.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	139.58	144.23	72.15	190.95	192.2	124.59	164.76	208.26	87.43
Merged-chrX-20921019-3	chrX	20920529	20921529	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013680)	promoter-TSS (NM_013680)	-111.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	33.18	36.86	26.82	45.88	23.79	32.96	50.7	26.53	25.61
Merged-chr1-138136604-3	chr1	138136100	138137100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	38526.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	98.39	98.61	55.5	87.04	58.78	39.39	50.7	50.41	52.46
Merged-chr7-109703659-3	chr7	109703149	109704149	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020616)	promoter-TSS (NM_020616)	-88.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	24.6	23.5	29.6	41.16	38.72	33.76	35.91	33.16	9.99
Merged-chr5-93206836-2	chr5	93206331	93207331	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	313.0	NM_029363	75610.0	Mm.175502	NM_029363	ENSMUSG00000029384	2010109A12Rik	-	RIKEN cDNA 2010109A12 gene	protein-coding	78.37	115.66	84.17	101.21	90.5	75.56	113.01	118.5	56.83
Merged-chr7-125561489-3	chr7	125560988	125561988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	9206.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	30.89	24.42	26.82	26.31	22.39	33.76	24.29	35.82	13.12
Merged-chr16-30023565-3	chr16	30023078	30024078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14911.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	15.45	15.21	24.05	14.17	13.53	12.06	24.29	25.65	28.1
Merged-chr5-137657256-3	chr5	137656781	137657781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178162, intron 6 of 11)	RSINE1|SINE|B4	-11567.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	39.47	30.87	41.62	29.01	11.66	28.13	34.85	35.37	17.49
Merged-chr1-184615536-3	chr1	184615026	184616026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57835.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	303.19	282.46	215.51	296.2	230.92	188.89	190.11	260.44	126.78
Merged-chr10-7956322-3	chr10	7955822	7956822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138667)	promoter-TSS (NM_138667)	-199.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	356.96	189.38	231.24	274.61	135.75	188.09	342.2	104.79	141.14
Merged-chr8-119911003-3	chr8	119910494	119911494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009462, intron 1 of 13)	CpG	634.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	77.8	63.13	64.75	79.62	53.65	84.4	68.65	49.96	53.08
Merged-chr7-122970403-3	chr7	122969888	122970888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011247)	promoter-TSS (NM_011247)	71.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	504.55	552.48	344.08	464.88	567.74	327.95	442.54	432.44	265.42
Merged-chr9-44089464-3	chr9	44088972	44089972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 3 of 12)	intron (NM_198092, intron 3 of 12)	4552.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	184.77	152.06	87.87	199.72	139.95	155.93	126.74	104.35	64.95
Merged-chr5-124050568-3	chr5	124050072	124051072	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18312.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	168.18	170.49	167.42	163.96	171.21	211.4	238.7	251.15	135.52
Merged-chr11-43395454-3	chr11	43394941	43395941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20980.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	63.5	41.01	19.42	54.65	37.32	28.13	47.53	27.41	8.74
Merged-chr5-67260680-3	chr5	67260174	67261174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028975, exon 1 of 8)	5' UTR (NM_028975, exon 1 of 8)	109.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	268.87	367.71	260.84	264.49	420.32	233.9	303.13	414.75	188.61
Merged-chr2-38643901-3	chr2	38643351	38644351	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011187)	promoter-TSS (NM_011187)	55.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	147.59	176.94	120.24	131.57	153.95	114.94	158.43	141.05	79.94
Merged-chr9-44568235-2	chr9	44567741	44568741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36651.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	255.14	274.17	118.39	340.06	248.65	189.69	309.46	332.51	147.39
Merged-chr1-37904982-3	chr1	37904469	37905469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033427)	TTS (NM_001033427)	11524.0	NM_001033427	332427.0	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	22.88	39.17	50.87	22.94	24.72	32.96	21.12	21.67	14.36
Merged-chr8-70001350-3	chr8	70000838	70001838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4954.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	287.74	259.42	189.62	258.42	228.59	204.16	222.86	293.16	129.28
Merged-chr10-127323665-3	chr10	127323171	127324171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-36.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	117.84	129.48	86.95	105.26	97.97	98.06	144.7	196.32	99.3
Merged-chr4-88409465-3	chr4	88408960	88409960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 43 of 43)	intron (NM_001081184, intron 43 of 43)	29466.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	38.33	19.81	24.05	36.43	30.79	28.94	32.74	27.41	17.49
Merged-chr4-109280263-3	chr4	109279756	109280756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	-19.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	86.38	50.69	61.05	95.14	47.58	94.85	71.82	33.6	66.82
Merged-chr5-146792340-3	chr5	146791862	146792862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	2594.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	54.92	86.17	37.0	61.4	70.44	65.11	107.73	72.96	46.84
Merged-chr18-53944401-3	chr18	53943893	53944893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	82280.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	39.47	28.11	13.87	35.76	30.79	29.74	24.29	23.43	23.11
Merged-chr14-30826747-3	chr14	30826241	30827241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	1147.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	49.2	42.85	37.0	32.39	19.13	26.53	38.02	30.95	35.6
Merged-chr1-171287971-3	chr1	171287472	171288472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-11.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	65.21	43.31	41.62	49.25	41.99	61.89	44.36	34.05	41.22
Merged-chr6-94226215-1	chr6	94225715	94226715	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	11227.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.43	5.53	7.4	10.12	5.13	2.41	2.11	0.0	3.75
Merged-chr15-6554769-3	chr15	6554298	6555298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-25049.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	82.95	87.55	78.62	87.71	66.24	118.96	97.17	64.11	86.18
Merged-chr8-25840802-3	chr8	25840330	25841330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011791)	promoter-TSS (NM_011791)	-43.0	NM_011791	23808.0	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ASH2 like histone lysine methyltransferase complex subunit	protein-coding	56.63	50.23	41.62	64.77	60.65	69.13	65.48	45.1	34.35
Merged-chr13-51645672-3	chr13	51645181	51646181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025415, intron 1 of 2)	CpG	449.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	173.33	178.32	111.92	139.67	138.09	151.92	177.44	196.76	134.9
Merged-chr17-47793521-3	chr17	47793041	47794041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7797.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	76.66	71.42	36.07	72.87	73.71	40.99	77.1	75.17	34.35
Merged-chr14-75045309-3	chr14	75044831	75045831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 9 of 13)	intron (NM_198642, intron 9 of 13)	29304.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	35.47	35.48	38.85	28.34	20.06	28.94	38.02	39.8	38.72
Merged-chr15-89429997-3	chr15	89429552	89430552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-125.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	342.09	501.33	345.01	305.65	438.05	295.79	318.97	451.89	198.6
Merged-chr1-152090333-3	chr1	152089814	152090814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197990)	promoter-TSS (NM_197990)	6.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	20.02	8.75	20.35	22.27	4.2	10.45	15.84	6.63	0.62
Merged-chr10-60262586-3	chr10	60262064	60263064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15064.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	146.45	136.85	88.8	151.14	151.62	91.63	115.12	132.65	54.33
Merged-chr5-134313667-3	chr5	134313174	134314174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359066, intron 1 of 32)	CpG	1086.0	NM_001359063	14886.0	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	120.7	96.3	125.79	109.3	85.37	100.47	116.18	60.58	44.97
Merged-chr16-90934947-3	chr16	90934441	90935441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026502)	promoter-TSS (NM_026502)	-92.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	80.66	106.9	33.3	89.06	99.37	57.07	51.75	49.52	36.22
Merged-chr13-55105246-3	chr13	55104745	55105745	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012017)	promoter-TSS (NM_012017)	-64.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	29.17	20.74	20.35	22.27	22.86	45.82	28.52	23.88	33.1
Merged-chr14-122644378-3	chr14	122643879	122644879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	ORR1B2|LTR|ERVL-MaLR	110051.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	50.34	40.55	32.37	54.65	44.78	42.6	68.65	105.68	48.71
Merged-chr7-132317383-3	chr7	132316892	132317892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360768)	promoter-TSS (NM_001360768)	-164.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	197.36	187.08	179.44	180.15	132.49	119.76	136.25	171.56	83.69
Merged-chr1-171171359-2	chr1	171170841	171171841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15823.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	8.01	5.53	9.25	3.37	1.87	4.02	9.51	3.98	3.75
Merged-chr14-20348130-3	chr14	20347606	20348606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360365)	promoter-TSS (NM_001360365)	15.0	NM_027475	70601.0	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless cell cycle regulator	protein-coding	147.02	147.45	98.97	132.92	151.15	167.99	152.09	136.63	60.58
Merged-chr5-130081439-3	chr5	130080928	130081928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	2058.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	37.18	47.46	56.42	46.56	28.92	48.23	71.82	65.88	42.47
Merged-chr10-67047904-3	chr10	67047401	67048401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	42826.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	44.62	31.79	25.9	33.06	27.99	34.56	42.25	63.67	24.98
Merged-chr9-64738120-2	chr9	64737608	64738608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_017382)	promoter-TSS (NM_017382)	-352.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	131.0	139.62	102.67	114.03	110.1	86.01	124.63	120.27	66.82
Merged-chrX-160994725-3	chrX	160994180	160995180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024624)	promoter-TSS (NM_001024624)	1.0	NM_001024624	382253.0	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	18.88	17.97	18.5	38.46	16.79	16.08	33.8	31.84	29.35
Merged-chr12-105785149-3	chr12	105784669	105785669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	CpG	472.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	419.32	364.94	346.86	385.94	348.95	199.34	414.02	290.5	203.6
Merged-chr2-155397812-1	chr2	155397312	155398312	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019825, intron 12 of 13)	B3|SINE|B2	15956.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	8.01	10.6	5.55	11.47	17.73	12.86	11.62	12.38	9.99
Merged-chr7-90030878-3	chr7	90030471	90031471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	1812.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	152.74	218.41	150.77	207.81	168.88	162.37	184.83	292.71	113.04
Merged-chr7-80044428-3	chr7	80043912	80044912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	18184.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	46.91	38.71	42.55	52.63	24.72	31.35	36.97	32.72	36.22
Merged-chr6-113681527-3	chr6	113681025	113682025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-15525.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	87.52	71.42	55.5	89.74	92.84	77.97	86.61	90.64	43.09
Merged-chr4-137871613-3	chr4	137871115	137872115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	9378.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	28.6	28.11	21.27	41.83	29.86	53.85	16.9	16.8	1.87
Merged-chr12-16210743-1	chr12	16210243	16211243	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	379027.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	5.72	3.23	5.55	8.77	14.0	15.27	2.11	3.1	0.0
Merged-chr1-136117172-1	chr1	136116672	136117672	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14011.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	7.44	4.61	5.55	1.35	5.13	4.82	24.29	27.41	21.23
Merged-chr13-52576282-3	chr13	52575749	52576749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3024.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	217.95	181.09	146.14	229.4	214.13	167.19	170.05	176.42	76.82
Merged-chr5-36538820-3	chr5	36538314	36539314	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 3 of 13)	L1MEf|LINE|L1	-8191.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	15.45	17.05	18.5	14.84	10.73	19.29	16.9	18.13	26.85
Merged-chr6-8209210-3	chr6	8208659	8209659	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145374)	promoter-TSS (NM_145374)	-68.0	NM_145374	252875.0	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	meiosis regulator for oocyte development	protein-coding	71.51	54.83	27.75	77.59	68.11	58.68	54.92	36.26	29.35
Merged-chr9-65541858-3	chr9	65541360	65542360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38227.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	421.03	349.74	184.99	538.42	421.72	268.47	387.62	534.14	175.49
Merged-chr5-118466556-3	chr5	118466045	118467045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-94174.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	13.73	8.29	3.7	16.19	17.26	7.23	9.51	10.17	6.25
Merged-chr8-60993076-4	chr8	60992576	60993576	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293637)	promoter-TSS (NM_001293637)	-117.0	NM_001293637	18004.0	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	176.19	167.26	135.04	188.25	157.68	157.54	193.28	171.56	113.04
Merged-chr3-65873289-3	chr3	65872786	65873786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	84963.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	37.18	25.8	11.1	17.54	15.39	16.08	29.57	22.99	14.99
Merged-chr3-60501817-3	chr3	60501302	60502302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	623.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	194.5	169.57	210.89	178.8	133.89	178.44	189.06	138.84	134.27
Merged-chr7-45434692-3	chr7	45434162	45435162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011304)	promoter-TSS (NM_011304)	-177.0	NM_030678	14936.0	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	44.62	33.64	38.85	51.95	31.72	44.21	65.48	47.75	27.48
Merged-chr9-58275334-3	chr9	58274819	58275819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22155.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	291.18	318.4	202.56	282.71	239.32	196.12	324.25	374.52	181.11
Merged-chr10-40317002-3	chr10	40316518	40317518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-14830.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	46.91	42.85	34.22	39.13	36.39	52.25	46.47	42.01	26.85
Merged-chr2-39065581-3	chr2	39065081	39066081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029793)	promoter-TSS (NM_029793)	-40.0	NM_029793	76899.0	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	161.32	161.27	128.57	170.03	176.81	116.55	163.71	189.69	76.82
Merged-chr10-68725597-3	chr10	68725113	68726113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1867.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	72.65	69.58	61.05	86.36	71.84	60.28	126.74	117.62	63.08
Merged-chr8-70791583-3	chr8	70791079	70792079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199308, intron 1 of 25)	intron (NM_199308, intron 1 of 25)	854.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	66.36	57.14	28.67	75.57	68.58	56.27	66.54	84.45	58.08
Merged-chr8-70139246-3	chr8	70138719	70139719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309645)	promoter-TSS (NM_001309645)	-22.0	NM_001025589	19727.0	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	45.76	55.29	55.5	41.16	50.38	74.75	49.64	63.23	40.59
Merged-chr11-97996002-3	chr11	97995491	97996491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152188, exon 1 of 6)	non-coding (NR_152188, exon 1 of 6)	182.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	92.1	72.8	47.17	62.75	37.32	44.21	76.05	59.25	50.59
Merged-chr12-21417217-1	chr12	21416717	21417717	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011739, exon 1 of 5)	5' UTR (NM_011739, exon 1 of 5)	219.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	128.71	98.15	94.35	95.81	98.43	62.7	125.69	80.47	87.43
Merged-chr2-130730954-3	chr2	130730472	130731472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-33453.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	101.83	79.25	64.75	178.8	101.23	106.1	72.88	77.82	76.19
Merged-chr19-60161128-3	chr19	60160628	60161628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026942, exon 5 of 5)	non-coding (NR_026942, exon 5 of 5)	16453.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	4.0	5.53	2.77	3.37	7.0	3.22	5.28	1.33	9.37
Merged-chr14-45219559-3	chr14	45219074	45220074	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027518)	promoter-TSS (NM_027518)	-143.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	249.99	193.99	195.17	197.02	161.41	144.68	193.28	145.47	134.27
Merged-chr18-36560396-3	chr18	36559886	36560886	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175375)	promoter-TSS (NM_175375)	-217.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	395.86	290.29	234.01	360.97	266.38	192.91	321.08	305.54	141.77
Merged-chr2-153240900-1	chr2	153240400	153241400	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080463)	promoter-TSS (NM_080463)	458.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	249.42	262.19	245.11	319.14	257.05	251.59	312.63	268.4	184.86
Merged-chrUn_JH584304-55090-1	chrUn_JH584304	54590	55590	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 5 of 6)	intron (NR_003518, intron 5 of 6)	4599.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	36.97	18.57	0.0
Merged-chr9-40710192-2	chr9	40709692	40710692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	24228.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	83.52	76.49	60.12	122.8	85.37	109.32	3.17	2.21	2.5
Merged-chr10-57690364-3	chr10	57689859	57690859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	39378.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	30.89	33.64	30.52	35.76	34.06	52.25	29.57	44.22	26.85
Merged-chr6-72598504-3	chr6	72598002	72599002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026159)	promoter-TSS (NM_026159)	-89.0	NM_001253692	232089.0	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	69.22	83.86	71.22	86.36	85.37	92.44	94.0	98.6	54.33
Merged-chr10-19077916-1	chr10	19077416	19078416	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62506.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	49.77	36.86	27.75	37.78	45.25	28.13	21.12	18.13	7.49
Merged-chr1-120531961-3	chr1	120531473	120532473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26949.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	99.54	75.57	73.07	47.9	47.58	51.44	132.02	84.9	59.33
Merged-chr7-44305304-3	chr7	44304798	44305798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009131, intron 3 of 3)	intron (NM_009131, intron 3 of 3)	1661.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	89.24	84.32	106.37	62.75	49.92	69.13	97.17	96.39	63.7
Merged-chr7-97155301-3	chr7	97154782	97155782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	73531.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	48.62	38.71	29.6	39.81	22.39	36.97	47.53	47.75	34.97
Merged-chr11-78512187-3	chr11	78511703	78512703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026389)	promoter-TSS (NM_026389)	-35.0	NM_199199	195040.0	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	244.27	200.44	151.69	205.11	220.19	159.95	232.36	226.39	91.81
Merged-chr10-84917269-3	chr10	84916847	84917847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183172)	promoter-TSS (NM_183172)	-266.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	241.41	200.9	178.52	184.2	188.0	185.68	217.57	179.52	101.8
Merged-chr5-99326607-1	chr5	99326107	99327107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73680.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	298.04	333.15	209.04	363.67	410.06	237.12	308.41	417.41	164.88
Merged-chr8-105393405-3	chr8	105392909	105393909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 5 of 15)	intron (NM_001301173, intron 5 of 15)	18028.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	60.07	45.62	33.3	57.35	45.72	28.13	71.82	37.58	26.23
Merged-chr6-39118224-3	chr6	39117686	39118686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045813)	promoter-TSS (NR_045813)	163.0	NM_172893	243771.0	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	163.61	155.28	123.02	204.44	154.88	165.58	181.66	150.78	138.02
Merged-chr7-78895851-3	chr7	78895352	78896352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162939)	promoter-TSS (NM_001162939)	-75.0	NM_026531	68048.0	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	42.9	35.94	28.67	38.46	38.25	45.01	46.47	27.41	22.48
Merged-chr4-53203821-3	chr4	53203308	53204308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42388.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	29.75	28.57	12.02	34.41	15.86	16.08	10.56	15.48	7.49
Merged-chr5-105699936-3	chr5	105699434	105700434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178701)	promoter-TSS (NM_178701)	-35.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	339.8	229.93	190.54	364.35	248.18	204.16	306.29	202.07	145.51
Merged-chr16-20403459-3	chr16	20402954	20403954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 5 of 6)	intron (NM_176839, intron 5 of 6)	22940.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	50.34	64.05	49.95	47.23	48.98	68.32	65.48	65.0	53.08
Merged-chr17-23829189-3	chr17	23828692	23829692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026305)	promoter-TSS (NM_026305)	-83.0	NM_026305	67673.0	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	83.52	68.66	70.3	88.39	62.05	86.81	92.94	68.54	49.34
Merged-chr6-145340837-3	chr6	145340348	145341348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-46777.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	431.33	423.0	221.06	470.28	446.92	223.45	302.07	478.42	156.13
Merged-chr9-13511297-1	chr9	13510797	13511797	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79936.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	9.15	15.67	5.55	18.22	20.99	20.09	12.67	5.75	16.24
Merged-chr11-46314866-3	chr11	46314368	46315368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-2009.0	NM_001252459	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	14.87	8.75	3.7	12.14	14.46	4.82	12.67	8.84	2.5
Merged-chr4-124645356-3	chr4	124644865	124645865	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12281.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	6.86	6.91	12.95	12.14	2.33	9.65	5.28	5.31	5.0
Merged-chr8-14889373-1	chr8	14888873	14889873	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	837.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	387.85	491.66	242.34	444.64	518.76	295.79	482.68	622.13	262.93
Merged-chr16-29847974-3	chr16	29847466	29848466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131158.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	29.17	16.59	22.2	24.29	19.59	20.9	23.24	19.01	20.61
Merged-chr11-4202576-3	chr11	4202081	4203081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	B3|SINE|B2	-15670.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	49.2	47.46	39.77	37.11	49.92	32.15	40.14	38.91	23.11
Merged-chr16-24933924-3	chr16	24933414	24934414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-125725.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	247.13	253.89	135.97	219.28	225.32	180.85	222.86	278.12	141.14
Merged-chr9-108848387-3	chr9	108847884	108848884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-5659.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	16.59	7.37	15.72	24.96	8.4	19.29	51.75	39.8	16.24
Merged-chr11-32267656-3	chr11	32267163	32268163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	44.0	NM_181569	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	82.95	94.0	61.97	97.16	71.84	58.68	72.88	61.46	44.97
Merged-chr3-116845008-3	chr3	116844513	116845513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14554.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	8.58	1.84	0.0	4.72	6.53	3.22	5.28	11.5	1.25
Merged-chr6-71823744-3	chr6	71823244	71824244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025430)	promoter-TSS (NM_025430)	40.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	29.17	17.51	19.42	22.94	17.26	16.88	51.75	45.1	13.74
Merged-chr2-154990487-1	chr2	154989987	154990987	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23083.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	2.86	0.92	0.0	80.97	79.77	53.05	4.22	2.21	2.5
Merged-chr1-107502268-3	chr1	107501768	107502768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9155.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	27.46	26.73	10.17	19.57	29.39	19.29	29.57	18.13	16.24
Merged-chr8-105345232-3	chr8	105344729	105345729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2741.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	136.72	97.69	97.12	91.76	73.24	115.75	107.73	125.58	85.56
Merged-chr13-100775876-3	chr13	100775374	100776374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021886)	promoter-TSS (NM_021886)	25.0	NM_021886	26886.0	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	12.59	11.06	18.5	14.84	9.8	5.63	5.28	8.84	3.12
Merged-chr12-33156983-3	chr12	33156485	33157485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	MIRb|SINE|MIR	9299.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	55.49	51.61	57.35	52.63	46.65	58.68	88.72	76.94	68.07
Merged-chr2-152806224-3	chr2	152805721	152806721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	22268.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	221.96	218.87	98.97	273.94	247.72	210.59	273.55	281.66	120.53
Merged-chr5-123151256-3	chr5	123150756	123151756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 6 of 16)	MIR|SINE|MIR	9063.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	68.07	45.62	30.52	51.95	25.66	53.85	29.57	25.2	38.72
Merged-chr2-6273609-3	chr2	6273132	6274132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-49125.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	81.8	67.74	46.25	65.45	55.05	46.62	64.43	71.19	43.09
Merged-chr19-6299644-3	chr19	6299093	6300093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6864.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	419.89	302.27	231.24	349.5	212.26	220.24	347.48	352.41	209.22
Merged-chr4-55798223-3	chr4	55797713	55798713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-265738.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	61.21	47.46	37.92	31.71	26.59	16.08	32.74	36.7	18.11
Merged-chr6-140609746-3	chr6	140609245	140610245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-12918.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	92.67	94.46	61.05	91.09	69.98	65.91	125.69	139.72	52.46
Merged-chr8-56311159-3	chr8	56310626	56311626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	16574.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	62.93	85.25	54.57	70.85	74.17	55.46	68.65	65.44	47.46
Merged-chr17-35046841-3	chr17	35046317	35047317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-72.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	48.62	46.54	53.65	41.16	23.79	28.94	64.43	44.22	49.96
Merged-chr2-166711836-3	chr2	166711341	166712341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	1991.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	370.69	282.46	212.74	340.73	224.39	269.27	343.26	399.72	191.73
Merged-chr15-25355509-3	chr15	25355028	25356028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58236.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	66.93	47.46	33.3	155.86	83.51	81.18	99.28	116.29	48.71
Merged-chr2-70977795-3	chr2	70977292	70978292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 5 of 9)	intron (NM_145524, intron 5 of 9)	40582.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	105.83	95.84	68.45	198.37	202.0	91.63	151.03	216.66	89.31
Merged-chr1-34801719-3	chr1	34801211	34802211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183019)	promoter-TSS (NM_183019)	-11.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	18.88	9.68	11.1	28.34	21.93	29.74	28.52	15.92	13.74
Merged-chr2-12294280-3	chr2	12293802	12294802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-6944.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	10.3	3.23	3.7	8.1	3.73	1.61	4.22	3.54	5.0
Merged-chr1-58713200-3	chr1	58712688	58713688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009805)	promoter-TSS (NM_009805)	-98.0	NM_207653	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	174.48	202.75	99.89	149.79	138.09	151.11	175.33	196.32	111.79
Merged-chr4-149665209-3	chr4	149664703	149665703	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-1887.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	41.76	31.79	33.3	37.11	24.72	27.33	36.97	35.82	24.98
Merged-chr6-90716438-3	chr6	90715912	90716912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001134383, exon 1 of 14)	5' UTR (NM_001134383, exon 1 of 14)	117.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	86.38	112.89	93.42	124.15	97.5	112.53	107.73	74.28	38.72
Merged-chr11-58938929-3	chr11	58938420	58939420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-14.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	97.82	66.81	81.4	112.68	51.78	64.3	104.56	66.33	67.45
Merged-chr5-92368540-3	chr5	92367949	92368949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5153.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	28.6	17.97	3.7	30.36	16.33	18.49	32.74	21.22	13.12
Merged-chr4-129782414-3	chr4	129781910	129782910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38069.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	173.9	169.11	123.02	157.21	132.49	176.03	115.12	149.01	106.17
Merged-chr16-76225343-3	chr16	76224844	76225844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102731.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	334.08	354.8	166.49	340.73	284.1	166.38	386.56	575.26	144.27
Merged-chr14-32173960-1	chr14	32173460	32174460	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033988, intron 6 of 9)	RSINE1|SINE|B4	8171.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	89.24	123.03	73.07	118.08	104.5	116.55	145.75	141.49	68.07
Merged-chr2-79713841-3	chr2	79713343	79714343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	6063.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	15.45	13.36	4.62	14.84	11.2	16.08	14.79	7.96	2.5
Merged-chr1-132370970-3	chr1	132370457	132371457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 2 of 4)	intron (NM_178874, intron 2 of 4)	-3009.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	72.08	85.25	82.32	61.4	62.98	80.38	74.99	57.92	55.58
Merged-chr4-12087194-3	chr4	12086695	12087695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 1 of 28)	intron (NR_110955, intron 1 of 28)	762.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	122.99	188.0	118.39	107.95	106.83	74.75	172.16	229.93	124.28
Merged-chr14-50785548-3	chr14	50785043	50786043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177625)	promoter-TSS (NM_177625)	-23.0	NM_001080949	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	30.89	40.55	18.5	33.74	33.59	36.97	32.74	40.24	16.24
Merged-chr11-50430933-3	chr11	50430381	50431381	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172557, exon 1 of 18)	exon (NM_172557, exon 1 of 18)	230.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	401.58	412.86	228.46	431.82	492.17	298.21	420.36	350.64	160.5
Merged-chr19-44388648-3	chr19	44388159	44389159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19050.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	251.7	246.52	123.94	344.78	277.57	204.16	328.47	324.11	106.79
Merged-chr2-34944919-3	chr2	34944436	34945436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009421, intron 10 of 10)	intron (NM_009421, intron 10 of 10)	16836.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	39.47	33.18	40.7	63.42	51.32	50.64	32.74	35.82	21.23
Merged-chr7-24082222-1	chr7	24081722	24082722	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001045486, exon 1 of 5)	5' UTR (NM_001045486, exon 1 of 5)	325.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	49.2	31.33	56.42	40.48	34.99	47.42	83.44	48.2	43.09
Merged-chr1-180944790-3	chr1	180944309	180945309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	2291.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	40.62	55.29	47.17	44.53	35.92	65.91	45.42	44.66	19.36
Merged-chr2-116990307-3	chr2	116989791	116990791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90139.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	226.53	198.14	118.39	183.52	107.3	127.8	152.09	146.36	95.55
Merged-chr15-64059904-3	chr15	64059399	64060399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360038)	promoter-TSS (NM_001360038)	-135.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	344.95	310.57	306.16	294.85	253.78	323.93	293.62	313.94	217.96
Merged-chr17-24454798-3	chr17	24454286	24455286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125990, intron 1 of 13)	CpG	606.0	NM_001301784	13560.0	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	287.17	311.03	222.91	246.27	297.17	200.95	184.83	216.66	123.66
Merged-chr11-115639153-3	chr11	115638638	115639638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10843.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	107.55	70.5	36.07	118.08	53.65	50.64	74.99	89.32	41.84
Merged-chr2-6165987-3	chr2	6165480	6166480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27271.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	9.15	15.21	5.55	10.8	6.53	8.84	8.45	5.31	12.49
Merged-chr11-114826864-3	chr11	114826362	114827362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24670.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	26.89	14.75	8.32	28.34	20.99	4.82	7.39	16.8	10.62
Merged-chr10-21993388-5	chr10	21992850	21993850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161850)	promoter-TSS (NM_001161850)	-540.0	NM_001161850	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	160.18	207.35	179.44	247.62	200.13	250.78	255.6	273.7	107.42
Merged-chr6-7845020-1	chr6	7844520	7845520	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052993)	promoter-TSS (NM_052993)	-204.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	86.95	58.06	73.07	97.83	70.91	87.61	72.88	38.47	24.36
Merged-chr1-184536612-3	chr1	184536100	184537100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21091.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	168.18	211.5	149.84	191.62	207.13	124.59	149.98	179.96	110.54
Merged-chr8-26981837-3	chr8	26981341	26982341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101502)	TTS (NM_001101502)	4505.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	38.9	37.78	28.67	40.48	36.39	46.62	32.74	28.74	35.6
Merged-chr1-86504257-3	chr1	86503720	86504720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-22337.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	89.24	70.5	32.37	144.39	94.23	78.77	127.8	110.98	48.71
Merged-chrUn_JH584304-65446-1	chrUn_JH584304	64946	65946	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5757.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	70.76	49.52	0.0
Merged-chr2-118567384-3	chr2	118566870	118567870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17684.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	28.6	17.51	18.5	20.92	8.4	17.68	17.96	30.07	12.49
Merged-chr17-72917558-3	chr17	72917051	72918051	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-754.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	229.39	201.82	154.47	154.51	107.76	96.45	161.6	182.17	93.68
Merged-chr12-21462803-3	chr12	21462301	21463301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45365.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	20.02	23.04	19.42	16.19	8.4	22.51	40.14	34.93	32.48
Merged-chr8-70754597-3	chr8	70754089	70755089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009001)	promoter-TSS (NM_009001)	-90.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	160.18	187.08	148.92	244.92	162.34	188.89	158.43	248.06	139.27
Merged-chr13-23544427-3	chr13	23543948	23544948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013548, exon 1 of 1)	5' UTR (NM_013548, exon 1 of 1)	396.0	NM_013548	260423.0	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	187.06	174.18	97.12	176.1	120.83	90.02	161.6	188.36	94.93
Merged-chr7-44854402-2	chr7	44853909	44854909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290694, intron 4 of 4)	intron (NM_001290694, intron 4 of 4)	-2737.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	117.84	95.84	150.77	107.28	96.57	135.04	144.7	138.4	143.64
Merged-chr8-71629437-3	chr8	71628932	71629932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029873, exon 42 of 42)	exon (NM_001029873, exon 42 of 42)	1674.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	348.38	285.23	300.61	387.29	307.43	309.46	330.59	378.94	166.12
Merged-chr18-82812529-3	chr18	82812022	82813022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43375.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	32.61	41.93	22.2	43.86	38.25	51.44	42.25	67.65	21.86
Merged-chr2-37358874-3	chr2	37358390	37359390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026176, intron 1 of 3)	intron (NM_026176, intron 1 of 3)	442.0	NM_026176	67466.0	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	84.09	95.84	74.92	70.85	64.38	97.26	91.89	80.47	70.57
Merged-chr10-43901712-3	chr10	43901211	43902211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130892)	promoter-TSS (NM_130892)	25.0	NM_001081054	76563.0	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	100.68	105.52	92.5	119.43	104.96	102.88	104.56	118.5	55.58
Merged-chr5-110108250-3	chr5	110107738	110108738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145147)	promoter-TSS (NM_145147)	-41.0	NM_145147	107999.0	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	153.31	178.78	197.02	166.66	149.75	163.17	204.9	199.42	116.79
Merged-chr11-82570226-3	chr11	82569719	82570719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-63134.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	155.6	188.0	167.42	120.77	126.42	134.23	158.43	176.42	121.16
Merged-chr13-81657200-1	chr13	81656700	81657700	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030257)	promoter-TSS (NM_030257)	-606.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	119.56	130.4	73.07	47.9	43.39	67.52	44.36	46.43	34.35
Merged-chr16-93091061-3	chr16	93090573	93091573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262116.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	17.16	12.9	19.42	18.89	11.66	11.25	24.29	19.46	2.5
Merged-chr11-106660829-3	chr11	106660337	106661337	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-47907.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	95.53	92.62	94.35	99.18	61.58	94.85	84.49	84.01	98.05
Merged-chr9-118633027-3	chr9	118632528	118633528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	intron (NM_133721, intron 3 of 27)	26319.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	126.42	85.25	88.8	151.14	119.89	97.26	122.52	83.13	58.71
Merged-chr4-97752436-2	chr4	97751949	97752949	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-25177.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	211.66	261.73	188.69	246.27	201.53	165.58	208.07	233.02	138.65
Merged-chr5-104973655-3	chr5	104973164	104974164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 5 of 15)	intron (NM_030239, intron 5 of 15)	9053.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	84.09	98.15	57.35	91.09	92.37	77.16	87.66	97.72	46.84
Merged-chr2-72852728-3	chr2	72852225	72853225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39008.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	29.17	30.87	22.2	43.86	28.92	11.25	53.87	41.56	29.35
Merged-chr15-75909455-5	chr15	75909028	75910028	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285430)	promoter-TSS (NM_001285430)	28.0	NM_001285431	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	193.35	162.66	104.52	179.47	108.23	145.49	149.98	110.54	99.3
Merged-chr12-24708199-3	chr12	24707688	24708688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009104)	promoter-TSS (NM_009104)	-66.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	15.45	11.52	12.95	13.49	12.13	15.27	23.24	16.8	13.74
Merged-chr10-67713251-3	chr10	67712744	67713744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141285.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	128.71	141.46	91.57	165.31	95.63	111.73	86.61	109.66	74.94
Merged-chr5-96918125-3	chr5	96917631	96918631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3141.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	199.65	202.75	116.54	161.93	116.16	142.27	189.06	227.27	136.15
Merged-chr1-72429391-3	chr1	72428898	72429898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045533, intron 3 of 3)	intron (NM_001045533, intron 3 of 3)	107166.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	16.59	11.06	1.85	29.69	25.19	27.33	23.24	19.9	6.25
Merged-chr11-69045639-3	chr11	69045145	69046145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011496)	promoter-TSS (NM_011496)	8.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	36.61	44.7	55.5	42.51	34.52	38.58	77.1	80.03	46.22
Merged-chr13-119791430-2	chr13	119790941	119791941	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-319.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	212.23	229.93	159.09	157.88	194.53	157.54	177.44	183.94	105.55
Merged-chr2-160367128-3	chr2	160366639	160367639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010658)	promoter-TSS (NM_010658)	-74.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	136.72	96.76	112.84	117.4	59.25	100.47	114.07	88.88	49.96
Merged-chr15-99725504-3	chr15	99724992	99725992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-126.0	NM_183256	66379.0	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	115.55	86.63	90.65	92.44	44.78	84.4	119.35	122.48	93.05
Merged-chr15-100405612-3	chr15	100405109	100406109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146161, exon 8 of 16)	exon (NM_001146161, exon 8 of 16)	17446.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	66.93	93.54	96.2	119.43	129.22	141.47	88.72	89.32	72.45
Merged-chr17-10392588-1	chr17	10392088	10393088	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63628.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	260.86	219.79	114.69	287.43	188.0	188.89	221.8	193.67	133.02
Merged-chr9-57077049-3	chr9	57076536	57077536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152107)	promoter-TSS (NR_152107)	660.0	NM_011378	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	208.8	176.02	176.67	194.32	133.89	228.28	154.2	139.72	152.38
Merged-chr3-107098235-3	chr3	107097724	107098724	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3343.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	59.49	49.3	57.35	122.8	98.9	67.52	182.72	220.2	95.55
Merged-chr16-15637885-3	chr16	15637369	15638369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011159)	promoter-TSS (NM_011159)	3.0	NM_011159	19090.0	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	64.64	64.97	61.05	48.58	61.58	57.07	73.93	72.52	34.35
Merged-chr9-7873034-3	chr9	7872542	7873542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007464, exon 1 of 9)	5' UTR (NM_007464, exon 1 of 9)	128.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	376.98	372.31	230.31	353.55	367.61	236.31	326.36	443.49	160.5
Merged-chr14-54464174-3	chr14	54463679	54464679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	32.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	204.22	211.5	175.74	176.78	183.34	174.42	193.28	195.44	128.65
Merged-chr2-35201119-3	chr2	35200611	35201611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026697)	promoter-TSS (NM_026697)	9.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	183.63	149.75	151.69	163.96	129.69	143.88	157.37	148.13	73.69
Merged-chr17-46253878-3	chr17	46253396	46254396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111142)	promoter-TSS (NM_001111142)	-269.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	22.88	14.75	5.55	19.57	9.8	14.47	27.46	15.48	7.49
Merged-chr18-73745085-3	chr18	73744571	73745571	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	9408.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	32.04	12.44	20.35	19.57	16.33	36.17	36.97	28.3	32.48
Merged-chr1-36547330-3	chr1	36546822	36547822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132321)	promoter-TSS (NR_132321)	-70.0	NR_132321	109346.0	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	24.6	28.57	23.12	32.39	20.53	34.56	13.73	17.24	24.36
Merged-chr17-23967211-3	chr17	23966715	23967715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8015.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	132.72	94.92	52.72	155.86	80.24	74.75	124.63	123.36	68.7
Merged-chr19-29418068-3	chr19	29417577	29418577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	7158.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	62.35	52.53	35.15	86.36	32.19	40.99	64.43	46.87	25.61
Merged-chr6-86438624-4	chr6	86438096	86439096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243741)	promoter-TSS (NM_001243741)	-50.0	NM_001243742	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	426.75	414.24	260.84	379.87	470.24	348.04	436.2	450.13	219.83
Merged-chr10-68732433-3	chr10	68731935	68732935	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	8689.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	70.93	58.06	45.32	56.0	46.18	27.33	82.38	72.52	53.71
Merged-chr3-95658793-3	chr3	95658293	95659293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	72.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	370.69	226.71	185.92	376.49	208.53	184.07	317.91	232.58	164.25
Merged-chr5-93206489-3	chr5	93205995	93206995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017367)	promoter-TSS (NM_017367)	0.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	161.89	215.19	176.67	201.07	183.8	154.33	218.63	200.3	116.16
Merged-chr5-140735489-3	chr5	140734988	140735988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	11361.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	286.6	188.92	167.42	284.06	217.39	174.42	175.33	184.38	70.57
Merged-chr17-70925012-3	chr17	70924515	70925515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64415.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	80.66	82.94	64.75	92.44	68.58	89.22	129.91	148.13	75.57
Merged-chr15-54920169-3	chr15	54919675	54920675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-29.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	21.74	11.98	1.85	8.1	7.0	8.04	23.24	24.32	14.36
Merged-chr7-19295969-3	chr7	19295472	19296472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013648, exon 10 of 10)	3' UTR (NM_013648, exon 10 of 10)	4903.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	6.86	2.76	7.4	4.72	3.73	10.45	4.22	1.77	3.75
Merged-chr1-74236461-3	chr1	74235961	74236961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029711)	promoter-TSS (NM_029711)	-56.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	234.54	223.48	185.92	241.55	209.46	237.12	258.77	239.65	158.63
Merged-chr9-47651634-3	chr9	47651125	47652125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	121273.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	127.0	107.36	111.92	170.7	94.23	127.0	120.41	119.83	85.56
Merged-chr12-116434939-1	chr12	116434439	116435439	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	intron (NM_133762, intron 17 of 28)	29537.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	21.74	21.66	24.97	12.14	9.33	18.49	113.01	120.27	51.84
Merged-chr7-110018699-2	chr7	110018180	110019180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181517, intron 1 of 24)	CpG	429.0	NM_001362172	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	199.07	210.12	208.11	196.34	212.73	234.71	156.32	177.75	126.15
Merged-chr5-33275161-3	chr5	33274662	33275662	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310535)	promoter-TSS (NM_001310535)	-158.0	NM_001198860	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	121.28	80.18	78.62	135.62	64.38	77.97	128.85	58.81	61.83
Merged-chr13-113433682-3	chr13	113433181	113434181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69163.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	85.81	88.47	74.0	82.32	76.51	82.79	51.75	64.11	46.84
Merged-chr13-100651177-3	chr13	100650696	100651696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-135.0	NM_001283011	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	393.0	340.52	312.63	435.87	341.48	304.64	423.53	373.19	156.76
Merged-chr4-119108981-6	chr4	119108538	119109538	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 1 of 9)	CpG	293.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	105.26	69.12	129.49	57.35	68.11	69.93	132.02	103.91	68.07
Merged-chr18-89162537-3	chr18	89162044	89163044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34883.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	18.88	18.89	18.5	30.36	19.13	26.53	25.35	17.24	34.97
Merged-chr3-100442682-3	chr3	100442194	100443194	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	16289.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	27.46	12.9	12.95	50.6	29.86	10.45	52.81	41.12	13.12
Merged-chr2-152735196-3	chr2	152734696	152735696	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1055.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	144.16	126.72	86.02	107.28	87.24	68.32	110.9	126.02	60.58
Merged-chr14-47365232-3	chr14	47364713	47365713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8647.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	45.19	47.46	44.4	64.77	67.64	57.07	85.55	95.07	58.71
Merged-chr7-73558607-3	chr7	73558091	73559091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-196.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	241.41	233.16	189.62	282.71	252.38	182.46	240.81	248.5	133.02
Merged-chr4-41563518-1	chr4	41563018	41564018	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	6009.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	2.86	5.07	7.4	6.07	2.8	11.25	44.36	72.07	30.6
Merged-chr7-27178555-3	chr7	27178061	27179061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029391, intron 1 of 7)	intron (NM_029391, intron 1 of 7)	322.0	NM_029391	19342.0	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	104.69	105.98	137.82	113.35	80.71	109.32	136.25	114.96	95.55
Merged-chr12-36036895-3	chr12	36036405	36037405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	5573.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	250.56	309.65	170.19	278.66	290.17	214.61	108.79	147.68	56.21
Merged-chr5-64806350-3	chr5	64805836	64806836	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	2813.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	128.14	153.44	107.29	133.59	127.36	135.04	114.07	141.94	94.3
Merged-chr13-12412265-3	chr13	12411776	12412776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	16901.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	179.62	168.65	91.57	184.2	156.75	109.32	199.62	207.82	95.55
Merged-chr13-104109650-3	chr13	104109151	104110151	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	-37.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	99.54	82.02	96.2	107.28	125.02	162.37	100.34	104.79	60.58
Merged-chr9-16038741-1	chr9	16038241	16039241	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-164185.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	4.58	6.45	1.85	10.8	13.06	4.82	6.34	4.86	3.75
Merged-chr2-159591741-5	chr2	159591259	159592259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-355582.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	45.76	47.46	36.07	53.98	41.99	56.27	49.64	24.76	34.97
Merged-chr1-155099609-3	chr1	155099050	155100050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010500)	promoter-TSS (NM_010500)	86.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	185.92	126.72	146.14	228.73	135.75	157.54	162.65	156.53	118.66
Merged-chr8-83594588-3	chr8	83594079	83595079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027179)	promoter-TSS (NM_027179)	-88.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	87.52	89.85	88.8	81.64	96.1	82.79	156.32	195.0	98.68
Merged-chr11-21082919-3	chr11	21082414	21083414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8410.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	46.34	39.17	30.52	35.09	33.59	32.15	38.02	33.6	26.85
Merged-chr10-86778784-5	chr10	86778295	86779295	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175331)	promoter-TSS (NM_175331)	-210.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	328.36	224.4	153.54	263.14	169.81	189.69	299.96	214.89	116.79
Merged-chr8-73293856-3	chr8	73293352	73294352	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	59688.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	15.45	15.21	16.65	14.84	8.86	8.84	13.73	9.73	13.74
Merged-chr3-51224790-6	chr3	51224277	51225277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009834, exon 1 of 3)	5' UTR (NM_009834, exon 1 of 3)	330.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	241.98	201.82	154.47	283.38	207.13	238.73	294.68	184.83	165.5
Merged-chr15-102065865-3	chr15	102065363	102066363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7910.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	5.15	6.91	0.0	3.37	3.27	8.04	1.06	1.77	3.12
Merged-chr4-134187192-3	chr4	134186685	134187685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-100.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	97.25	84.78	83.25	132.92	118.03	122.18	119.35	80.03	36.85
Merged-chr15-101252779-3	chr15	101252285	101253285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-14061.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	92.1	117.04	88.8	98.51	65.78	92.44	192.23	192.78	120.53
Merged-chr12-79750397-3	chr12	79749869	79750869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	174364.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	175.62	192.61	122.09	155.19	108.7	125.39	116.18	148.13	96.8
Merged-chr13-64312736-3	chr13	64312272	64313272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025370)	promoter-TSS (NM_025370)	-62.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	149.31	148.83	116.54	163.28	156.28	147.9	162.65	134.42	102.42
Merged-chr6-24527648-3	chr6	24527109	24528109	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080847)	promoter-TSS (NM_080847)	81.0	NM_001311068	68202.0	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik|CI-13kD-B	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	27.46	33.64	20.35	49.93	41.05	52.25	55.98	43.77	24.98
Merged-chr1-120265386-3	chr1	120264889	120265889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133186)	promoter-TSS (NM_133186)	-109.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	44.62	29.03	29.6	40.48	41.99	42.6	55.98	43.33	14.99
Merged-chr12-108792323-3	chr12	108791818	108792818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009537)	promoter-TSS (NM_009537)	-993.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	436.48	387.06	278.41	415.63	426.39	286.15	312.63	385.13	184.86
Merged-chr3-121600591-3	chr3	121600127	121601127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42858.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	8.01	3.69	9.25	9.45	5.13	17.68	21.12	15.92	26.85
Merged-chr9-88439053-3	chr9	88438560	88439560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-109.0	NM_172926	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	154.45	136.39	92.5	160.58	140.89	144.68	153.15	128.23	114.91
Merged-chr18-82911715-3	chr18	82911211	82912211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	832.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	263.72	187.08	160.94	234.8	158.15	155.13	254.54	257.34	160.5
Merged-chr15-7085282-3	chr15	7084773	7085773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44299.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	10.3	11.06	6.47	8.77	2.8	8.84	6.34	4.86	7.49
Merged-chr7-121469598-3	chr7	121469094	121470094	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	77298.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	18.31	14.75	19.42	11.47	14.93	20.9	24.29	14.59	30.6
Merged-chr6-48555243-3	chr6	48554749	48555749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177736, intron 1 of 2)	RLTR42|LTR|ERVK	450.0	NM_177736	243371.0	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	97.82	130.4	71.22	120.77	118.96	110.12	138.36	165.81	71.82
Merged-chrX_GL456233_random-39190-1	chrX_GL456233_random	38690	39690	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302138)	promoter-TSS (NM_001302138)	1.0	NM_001302138	20955.0	Mm.1517	NM_011515	ENSMUSG00000051412	Vamp7	Sybl1|TI-VAMP|VAMP-7	vesicle-associated membrane protein 7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	31.69	28.74	0.0
Merged-chr12-78226419-3	chr12	78225933	78226933	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145965)	promoter-TSS (NM_145965)	-222.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	292.32	291.68	182.22	304.97	252.85	232.29	365.44	356.39	175.49
Merged-chr12-21336403-1	chr12	21335903	21336903	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291871, intron 11 of 18)	intron (NM_001291871, intron 11 of 18)	20011.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	85.24	91.7	78.62	85.01	63.91	112.53	42.25	38.91	21.23
Merged-chr11-109425813-3	chr11	109425299	109426299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025275)	promoter-TSS (NM_025275)	-147.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	194.5	148.37	117.47	182.17	153.95	134.23	144.7	116.29	98.68
Merged-chr7-45872787-3	chr7	45872301	45873301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133950)	promoter-TSS (NM_133950)	-39.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	52.63	81.1	71.22	62.75	57.85	94.04	89.78	60.13	68.7
Merged-chr3-144589281-3	chr3	144588768	144589768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	18841.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	34.32	36.86	30.52	41.83	31.72	36.17	31.69	29.18	24.36
Merged-chr6-108658587-3	chr6	108658120	108659120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-2009.0	NM_011498	20893.0	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	548.03	558.93	325.58	570.81	520.62	321.52	336.92	447.47	126.15
Merged-chr2-73371721-3	chr2	73371203	73372203	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14777.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	61.78	60.36	45.32	65.45	85.37	88.42	73.93	88.43	48.71
Merged-chr10-82354379-4	chr10	82353901	82354901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-113126.0	NM_001105557	237411.0		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	68.07	70.96	57.35	77.59	75.57	73.95	110.9	71.19	28.73
Merged-chr5-137116231-3	chr5	137115744	137116744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201373)	promoter-TSS (NM_201373)	-37.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	79.52	80.18	86.02	83.66	51.32	85.2	96.11	115.41	79.32
Merged-chr5-125106371-1	chr5	125105871	125106871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	72843.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	10.87	11.52	2.77	8.77	7.46	12.86	6.34	0.0	3.75
Merged-chr7-19269775-4	chr7	19269184	19270184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	2170.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	113.27	94.46	133.19	85.69	68.11	128.61	117.24	103.91	131.78
Merged-chr1-172217351-3	chr1	172216837	172217837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009813, intron 2 of 10)	intron (NM_009813, intron 2 of 10)	2558.0	NM_009813	12372.0	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	25.17	17.05	20.35	20.92	13.53	11.25	14.79	7.96	21.23
Merged-chr12-99608489-3	chr12	99607997	99608997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	19477.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	35.47	31.33	27.75	33.74	30.79	36.97	47.53	38.91	36.85
Merged-chr11-118235143-3	chr11	118234657	118235657	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	13435.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	355.25	299.05	201.64	318.47	213.19	247.57	292.56	372.3	156.13
Merged-chr13-41596554-2	chr13	41596040	41597040	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9676.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	67.5	83.4	49.02	62.07	66.24	69.93	74.99	95.95	59.33
Merged-chr14-25459604-1	chr14	25459104	25460104	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	419.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	246.56	200.9	193.32	207.81	194.53	169.6	158.43	136.19	96.8
Merged-chr15-8444110-2	chr15	8443609	8444609	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	CpG	354.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	362.68	341.44	341.31	299.57	274.77	268.47	326.36	248.5	253.56
Merged-chr7-45510474-3	chr7	45510033	45511033	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163662)	promoter-TSS (NM_001163662)	-125.0	NM_001163662	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	125.28	146.07	115.62	114.03	105.43	120.57	148.92	156.97	86.81
Merged-chr4-147940892-3	chr4	147940432	147941432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029841)	promoter-TSS (NM_029841)	37.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	59.49	20.74	59.2	43.86	30.79	57.07	62.31	20.78	27.48
Merged-chr1-170702494-2	chr1	170701984	170702984	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57952.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	2.86	4.61	6.47	16.19	4.67	7.23	9.51	1.33	6.25
Merged-chr17-87303697-3	chr17	87303192	87304192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	20806.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	157.89	201.36	123.02	145.06	172.14	147.9	138.36	187.04	79.32
Merged-chr7-24507474-3	chr7	24507020	24508020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110958, intron 1 of 2)	CpG	433.0	NR_110958	232969.0	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	29.75	30.41	44.4	43.18	30.32	24.11	33.8	19.46	29.98
Merged-chr9-21238862-4	chr9	21238487	21239487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016679, exon 1 of 5)	5' UTR (NM_016679, exon 1 of 5)	345.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	291.75	236.84	138.74	306.32	240.25	217.02	271.44	195.0	132.4
Merged-chr10-118100792-3	chr10	118100286	118101286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41001.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	160.18	119.8	39.77	159.23	107.3	84.4	110.9	107.0	59.33
Merged-chr14-70289480-3	chr14	70288986	70289986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008915)	promoter-TSS (NM_008915)	11.0	NM_001360229	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	48.05	28.11	16.65	39.81	30.79	36.17	58.09	21.22	16.24
Merged-chr6-29536968-3	chr6	29536478	29537478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012057, exon 9 of 9)	3' UTR (NM_012057, exon 9 of 9)	7696.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	31.46	26.73	34.22	31.04	27.06	46.62	25.35	29.18	41.22
Merged-chr15-6569290-3	chr15	6568792	6569792	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10555.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	250.56	241.91	122.09	174.08	171.21	174.42	183.78	216.22	147.39
Merged-chr6-125191726-3	chr6	125191205	125192205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-119.0	NM_146171	68298.0	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	81.8	104.6	100.82	73.54	73.71	122.98	63.37	94.18	69.32
Merged-chr3-142700977-3	chr3	142700486	142701486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293560)	promoter-TSS (NM_001293560)	-62.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	29.17	26.73	22.2	36.43	22.86	14.47	22.18	25.2	17.49
Merged-chr16-93613803-1	chr16	93613303	93614303	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5966.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.57	0.0	0.0	2.7	0.93	0.8	40.14	27.41	12.49
Merged-chr13-52914740-3	chr13	52914256	52915256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	14921.0	NM_016709	11992.0	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	22.31	29.49	9.25	33.74	33.59	38.58	28.52	21.67	12.49
Merged-chr12-80847052-3	chr12	80846591	80847591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	56559.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	138.44	133.17	109.14	112.68	65.78	81.18	170.05	197.21	73.69
Merged-chr5-144256731-3	chr5	144256207	144257207	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163709, intron 2 of 2)	intron (NM_001163709, intron 2 of 2)	1482.0	NM_018772	55950.0	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	175.05	166.34	188.69	192.29	151.15	204.16	217.57	217.1	151.14
Merged-chr5-67815622-3	chr5	67815129	67816129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	31802.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	118.42	118.88	74.92	122.12	101.7	121.37	126.74	131.77	108.04
Merged-chr8-46138350-3	chr8	46137773	46138773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14127.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	118.42	146.53	109.14	100.53	82.57	94.04	158.43	126.9	89.31
Merged-chr9-44268206-3	chr9	44267717	44268717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163743)	promoter-TSS (NM_001163743)	-30.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	179.05	148.37	108.22	164.63	120.83	107.71	147.87	100.81	94.93
Merged-chr7-16400179-3	chr7	16399698	16400698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198631)	promoter-TSS (NM_198631)	-998.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	440.48	480.14	295.06	408.2	407.73	318.3	406.63	421.39	239.19
Merged-chr14-31183128-3	chr14	31182628	31183628	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347583)	TTS (NM_001347583)	-14487.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	88.1	108.75	159.09	95.81	88.64	191.3	142.59	133.09	117.41
Merged-chr7-75787572-3	chr7	75787129	75788129	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60709.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	54.35	95.84	92.5	72.87	60.18	84.4	87.66	96.83	58.71
Merged-chr6-133105259-3	chr6	133104782	133105782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163445)	promoter-TSS (NM_001163445)	43.0	NR_073368	381820.0	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	350.1	382.45	251.59	290.13	337.29	196.93	222.86	192.34	118.66
Merged-chr7-97579718-3	chr7	97579184	97580184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	-187.0	NM_001177947	66273.0	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	69.79	70.96	80.47	80.29	54.11	74.75	92.94	71.19	54.33
Merged-chr9-90232999-3	chr9	90232506	90233506	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	37763.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	168.18	156.21	110.99	176.1	101.23	143.88	160.54	145.47	102.42
Merged-chr11-93996128-2	chr11	93995635	93996635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199203)	promoter-TSS (NM_001199203)	44.0	NM_027569	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	493.68	480.6	440.28	543.82	501.03	372.96	429.87	501.86	232.32
Merged-chr4-152010449-3	chr4	152009964	152010964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	1573.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	101.83	101.37	41.62	132.92	180.54	77.16	63.37	82.24	45.59
Merged-chr2-114201290-4	chr2	114200709	114201709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	CpG	223.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	217.38	233.16	157.24	222.66	209.93	157.54	168.99	208.26	122.41
Merged-chr11-120232802-3	chr11	120232296	120233296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347621)	promoter-TSS (NM_001347621)	-151.0	NM_001347621	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	14.87	11.06	11.1	4.72	6.06	0.0	15.84	39.35	9.99
Merged-chr18-12224109-3	chr18	12223617	12224617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	12269.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	194.5	215.19	154.47	211.19	223.92	224.26	214.41	201.19	114.29
Merged-chr1-95657405-3	chr1	95656891	95657891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 2 of 3)	intron (NM_001159745, intron 2 of 3)	10203.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	102.97	99.53	47.17	97.16	97.5	68.32	87.66	113.19	39.97
Merged-chr10-100835003-3	chr10	100834500	100835500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93365.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	96.68	58.98	26.82	114.03	62.98	25.72	117.24	117.17	53.08
Merged-chr10-95530904-3	chr10	95530400	95531400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	MTD|LTR|ERVL-MaLR	15738.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	106.4	109.21	69.37	103.23	53.65	68.32	100.34	122.48	68.7
Merged-chr2-51312229-3	chr2	51311742	51312742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70411.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	20.59	16.59	9.25	16.87	25.66	22.51	7.39	6.63	8.74
Merged-chr12-111438083-1	chr12	111437583	111438583	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	514.28	412.86	196.09	464.88	400.26	281.33	388.68	473.56	177.99
Merged-chr1-58727183-3	chr1	58726679	58727679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-3373.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	264.29	268.64	140.59	263.81	174.94	227.47	221.8	225.06	156.76
Merged-chr13-95942066-3	chr13	95941550	95942550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR73|LTR|ERV1	-50128.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	12.01	3.23	0.0	8.77	2.33	0.0	14.79	19.46	9.37
Merged-chr14-64639750-3	chr14	64639258	64640258	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12773.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	47.48	35.02	33.3	68.15	50.85	37.78	48.58	45.1	21.23
Merged-chr6-73221763-3	chr6	73221268	73222268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164669)	promoter-TSS (NM_001164669)	-137.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	20.02	19.81	3.7	10.12	4.67	0.0	14.79	10.17	3.75
Merged-chr6-116487030-3	chr6	116486532	116487532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-6579.0	NM_146912	258914.0	Mm.391507	NM_146912	ENSMUSG00000053391	Olfr211	MOR253-9	olfactory receptor 211	protein-coding	72.65	58.52	12.02	61.4	39.65	49.83	60.2	51.73	30.6
Merged-chr16-3744027-3	chr16	3743523	3744523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-76.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	298.61	393.51	287.66	331.96	395.13	335.18	407.69	473.12	245.44
Merged-chr7-79392327-3	chr7	79391828	79392828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145946)	promoter-TSS (NM_145946)	-10.0	NM_145946	208836.0	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	39.47	45.62	31.45	49.93	41.52	46.62	64.43	67.65	34.97
Merged-chr7-127708849-3	chr7	127708338	127709338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009746)	promoter-TSS (NM_009746)	-72.0	NM_001347652	12055.0	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	76.08	41.47	59.2	85.69	42.45	57.07	62.31	32.28	32.48
Merged-chr4-141060712-3	chr4	141060188	141061188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-143.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	49.2	38.25	37.0	48.58	34.52	28.13	47.53	38.03	20.61
Merged-chr6-38714164-3	chr6	38713631	38714631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	intron (NM_010433, intron 12 of 14)	51062.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	53.2	46.54	25.9	49.25	27.52	33.76	38.02	44.66	28.73
Merged-chr17-5466987-3	chr17	5466499	5467499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	16070.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	13.16	7.83	3.7	4.72	10.26	0.0	11.62	7.07	5.0
Merged-chr4-132732542-3	chr4	132732044	132733044	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201368)	promoter-TSS (NM_201368)	2.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	26.31	26.73	35.15	45.88	30.79	34.56	28.52	41.12	19.36
Merged-chr10-7211630-3	chr10	7211131	7212131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	CpG	606.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	164.75	185.7	154.47	183.52	189.87	179.24	149.98	134.86	96.8
Merged-chr9-62838656-3	chr9	62838139	62839139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-148.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	132.14	78.33	78.62	125.5	107.3	110.92	125.69	100.81	63.7
Merged-chr8-3676459-3	chr8	3675969	3676969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025701)	promoter-TSS (NM_025701)	-8.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	45.76	68.66	82.32	41.83	64.38	62.7	79.21	49.52	64.33
Merged-chr12-32820946-4	chr12	32820433	32821433	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021524, intron 1 of 10)	CpG	598.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	427.9	325.77	283.96	412.93	289.24	225.86	376.0	353.29	182.36
Merged-chr2-148672556-3	chr2	148672059	148673059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019761)	promoter-TSS (NM_019761)	-56.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	41.76	39.63	65.67	49.25	41.52	50.64	57.03	45.99	45.59
Merged-chr18-57354760-3	chr18	57354263	57355263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028447)	promoter-TSS (NM_028447)	30.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	175.05	126.25	102.67	201.74	131.09	109.32	160.54	81.8	88.06
Merged-chr19-38025491-3	chr19	38024940	38025940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	(G)n|Simple_repeat|Simple_repeat	18137.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	117.84	87.55	49.95	136.29	86.3	71.54	58.09	57.04	53.08
Merged-chr5-132426063-1	chr5	132425563	132426563	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	ORR1E|LTR|ERVL-MaLR	116280.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	4.58	4.15	7.4	22.94	20.53	14.47	2.11	1.77	0.0
Merged-chr18-67800069-3	chr18	67799582	67800582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045376)	promoter-TSS (NR_045376)	-25.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	58.35	49.3	37.0	52.63	48.98	56.27	81.33	72.96	27.48
Merged-chr5-72796469-3	chr5	72795964	72796964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-43687.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	56.06	54.37	37.0	60.72	48.52	64.3	30.63	37.58	43.72
Merged-chr7-98656732-3	chr7	98656216	98657216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172280)	promoter-TSS (NM_172280)	-147.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	200.79	163.12	178.52	170.03	159.08	148.7	196.45	182.62	102.42
Merged-chr17-56476499-3	chr17	56475981	56476981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011218)	promoter-TSS (NM_011218)	-1.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	14.87	6.91	8.32	10.8	4.67	8.84	16.9	9.29	11.24
Merged-chr15-88129110-2	chr15	88128606	88129606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-185768.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	108.69	135.01	72.15	176.78	182.87	163.97	2.11	1.33	6.25
Merged-chr10-9880581-3	chr10	9880083	9881083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	Lx|LINE|L1	20457.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	12.59	6.91	5.55	18.22	8.86	6.43	7.39	7.52	6.25
Merged-chr8-88288960-3	chr8	88288460	88289460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037723)	promoter-TSS (NM_001037723)	-106.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	81.8	95.38	64.75	68.15	64.38	36.17	55.98	61.9	34.97
Merged-chr12-40379694-3	chr12	40379190	40380190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178845, intron 1 of 11)	intron (NM_178845, intron 1 of 11)	66100.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	26.89	17.05	21.27	19.57	13.06	10.45	19.01	9.29	8.74
Merged-chrX-12587702-3	chrX	12587200	12588200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027439)	promoter-TSS (NM_027439)	-59.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	216.24	224.86	126.72	180.82	224.86	132.63	166.88	229.04	102.42
Merged-chr10-117288417-3	chr10	117287909	117288909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013590, exon 4 of 4)	3' UTR (NM_013590, exon 4 of 4)	4459.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	72.08	91.24	63.82	77.59	60.18	79.58	54.92	55.27	44.34
Merged-chr10-25284609-3	chr10	25284113	25285113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	intron (NM_018747, intron 2 of 7)	14550.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	134.43	153.9	56.42	156.53	155.81	136.64	111.96	186.15	60.58
Merged-chr14-30876235-3	chr14	30875752	30876752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-3005.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	53.77	61.75	46.25	80.29	59.71	78.77	28.52	42.01	19.36
Merged-chr1-60409568-3	chr1	60409021	60410021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198571)	promoter-TSS (NM_001198571)	-98.0	NM_001198571	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	21.74	23.96	22.2	29.69	21.46	18.49	31.69	22.11	28.73
Merged-chr15-12375763-3	chr15	12375238	12376238	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	54242.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	119.56	86.63	47.17	80.29	75.57	88.42	61.26	67.65	49.34
Merged-chr6-91741098-3	chr6	91740601	91741601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 8 of 14)	intron (NM_009320, intron 8 of 14)	57034.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	24.6	18.89	16.65	39.13	20.99	22.51	22.18	15.03	16.24
Merged-chr18-37924415-3	chr18	37923901	37924901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	11075.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	29.17	28.57	12.02	10.8	22.86	38.58	21.12	19.9	19.98
Merged-chr14-120327290-3	chr14	120326783	120327783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	20831.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	69.22	57.6	40.7	97.83	47.12	56.27	130.97	119.83	61.83
Merged-chr8-11497509-3	chr8	11496985	11497985	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	-21.0	NM_001190357	69225.0	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	61.21	64.05	52.72	80.97	47.12	90.83	83.44	53.06	45.59
Merged-chr12-87408065-3	chr12	87407555	87408555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19700.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	110.41	125.33	87.87	128.87	113.36	172.01	166.88	189.25	95.55
Merged-chr6-83165831-3	chr6	83165388	83166388	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198866)	promoter-TSS (NM_001198866)	-36.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	85.81	69.58	45.32	80.29	60.65	55.46	106.67	74.73	61.83
Merged-chr11-121354474-3	chr11	121353955	121354955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	-8.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	443.91	439.59	316.33	352.88	412.86	276.5	335.87	370.09	185.48
Merged-chr13-119790880-3	chr13	119790365	119791365	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028245)	promoter-TSS (NM_028245)	-59.0	NM_001302549	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	360.97	324.39	232.16	276.63	246.32	207.38	314.74	247.61	149.89
Merged-chr2-112379183-3	chr2	112378691	112379691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024254)	promoter-TSS (NM_024254)	-20.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	48.05	33.64	21.27	51.95	48.05	40.99	36.97	21.22	18.74
Merged-chr9-108832577-3	chr9	108832057	108833057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 2 of 35)	CpG	6512.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	4.58	3.69	0.0	3.37	4.67	3.22	10.56	8.84	2.5
Merged-chr17-48324480-3	chr17	48323984	48324984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	8322.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	70.93	82.94	73.07	99.18	58.78	82.79	127.8	107.0	72.45
Merged-chr1-60180424-3	chr1	60179921	60180921	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-178.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	282.59	220.72	150.77	294.18	175.87	172.01	251.37	199.86	130.53
Merged-chr6-120091097-3	chr6	120090594	120091594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2286.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	44.05	31.79	14.8	51.95	56.91	24.11	48.58	51.73	20.61
Merged-chr6-127561291-3	chr6	127560799	127561799	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-16676.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	10.3	4.61	6.47	8.1	15.39	11.25	17.96	10.61	7.49
Merged-chr18-60803742-3	chr18	60803257	60804257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-92.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	194.5	132.25	96.2	109.3	75.57	103.69	154.2	162.72	65.58
Merged-chr10-37190230-3	chr10	37189711	37190711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51285.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	69.79	71.42	73.07	52.63	59.25	53.85	68.65	80.47	55.58
Merged-chr8-126839661-3	chr8	126839164	126840164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9356.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	158.46	90.77	49.95	158.56	146.02	106.9	120.41	107.0	49.34
Merged-chr11-51594975-3	chr11	51594482	51595482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028398, intron 8 of 12)	intron (NM_028398, intron 8 of 12)	10225.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	24.03	37.32	35.15	31.04	17.73	32.15	29.57	31.39	29.35
Merged-chr15-53415996-3	chr15	53415493	53416493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69810.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	185.35	155.28	82.32	149.79	89.1	128.61	126.74	140.61	117.41
Merged-chr13-106998796-3	chr13	106998293	106999293	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008442, intron 1 of 21)	intron (NM_008442, intron 1 of 21)	23321.0	NM_001145779	16563.0	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	12.59	15.21	3.7	18.22	12.6	14.47	12.67	10.61	13.12
Merged-chr10-58351868-3	chr10	58351368	58352368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359116)	promoter-TSS (NM_001359116)	-95.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	23.45	37.78	22.2	33.06	24.26	38.58	29.57	26.53	36.22
Merged-chr4-83417643-3	chr4	83417113	83418113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152448)	promoter-TSS (NR_152448)	-111.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	34.32	40.55	43.47	41.16	31.26	43.4	50.7	33.16	22.48
Merged-chr19-7383024-3	chr19	7382507	7383507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167831)	promoter-TSS (NM_001167831)	4.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	71.51	55.29	45.32	95.81	81.17	73.14	54.92	48.2	39.35
Merged-chr2-150311424-3	chr2	150310917	150311917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027017, intron 3 of 3)	intron (NM_027017, intron 3 of 3)	51348.0	NM_027017	69277.0	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	49.2	53.45	33.3	68.82	50.38	49.83	88.72	105.24	30.6
Merged-chr6-31385775-3	chr6	31385279	31386279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	12994.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	93.24	100.45	57.35	112.68	104.5	88.42	133.08	114.96	106.79
Merged-chr3-122577590-3	chr3	122577086	122578086	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	Lx8b|LINE|L1	-35905.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	18.31	23.96	12.02	18.22	6.53	20.9	32.74	21.22	22.48
Merged-chr8-124722070-3	chr8	124721589	124722589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026855)	promoter-TSS (NM_026855)	-50.0	NM_026855	68865.0	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	29.17	34.1	41.62	29.01	41.52	29.74	35.91	38.91	32.48
Merged-chr3-20057760-3	chr3	20057267	20058267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009210)	promoter-TSS (NM_009210)	-44.0	NM_009210	20585.0	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	71.51	100.91	47.17	75.57	76.97	79.58	76.05	102.58	61.2
Merged-chr5-120505576-3	chr5	120505147	120506147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2024.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	33.18	20.27	14.8	42.51	31.72	21.7	33.8	29.63	11.24
Merged-chr13-37779515-3	chr13	37779024	37780024	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46514.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	117.84	109.21	88.8	126.17	108.23	124.59	140.47	126.02	59.95
Merged-chr11-115060833-1	chr11	115060333	115061333	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	RSINE1|SINE|B4	1206.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	220.24	175.1	160.02	20.92	9.33	28.13	46.47	23.88	23.73
Merged-chr11-101645571-2	chr11	101645063	101646063	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17614.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	8.58	23.04	14.8	101.21	73.71	86.81	127.8	103.91	74.32
Merged-chr13-41552821-3	chr13	41552305	41553305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-53411.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	189.35	218.41	151.69	176.1	149.28	141.47	204.9	195.88	108.04
Merged-chr2-113398358-3	chr2	113397853	113398853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-42711.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	152.74	166.8	75.85	186.22	180.07	108.51	100.34	126.9	51.84
Merged-chr1-132008075-3	chr1	132007572	132008572	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	CpG	467.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	574.34	513.31	443.98	563.39	492.17	361.7	540.77	454.11	322.88
Merged-chr4-141656001-3	chr4	141655491	141656491	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	8124.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	118.42	93.08	100.82	96.48	62.51	78.77	135.19	143.26	93.68
Merged-chr11-115412882-3	chr11	115412377	115413377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347645)	TTS (NM_001347645)	7042.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	153.88	155.28	116.54	153.84	133.42	141.47	108.79	165.81	130.53
Merged-chr15-66555560-3	chr15	66555053	66556053	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172514, intron 3 of 9)	intron (NM_172514, intron 3 of 9)	5493.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	18.88	21.66	8.32	8.77	13.53	13.66	11.62	15.92	7.49
Merged-chr14-70066172-3	chr14	70065663	70066663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11282.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	157.89	88.93	101.74	122.12	67.64	85.2	116.18	106.12	64.33
Merged-chrX-9662991-3	chrX	9662489	9663489	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025975)	promoter-TSS (NM_025975)	-6.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	21.74	28.57	15.72	33.06	23.33	35.37	22.18	22.99	31.23
Merged-chr16-21995486-3	chr16	21994978	21995978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083894)	promoter-TSS (NM_001083894)	64.0	NM_001289582	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	38.9	44.24	14.8	85.69	91.9	56.27	44.36	43.33	16.24
Merged-chrUn_JH584304-31661-1	chrUn_JH584304	31161	32161	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28028.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	105.62	60.13	0.0
Merged-chr6-121226319-3	chr6	121225829	121226829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017379)	TTS (NM_017379)	15595.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	82.38	108.75	86.02	53.98	53.18	57.07	99.28	101.7	84.94
Merged-chr2-152741858-3	chr2	152741360	152742360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5609.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	52.06	61.28	57.35	68.15	49.45	45.01	61.26	65.88	36.85
Merged-chr9-59291519-3	chr9	59291022	59292022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028121)	promoter-TSS (NM_028121)	-50.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	253.99	209.2	240.49	242.9	209.0	210.59	235.53	217.55	164.88
Merged-chr4-126677603-3	chr4	126677116	126678116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011970)	promoter-TSS (NM_011970)	-27.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	223.67	297.21	200.71	193.64	226.26	191.3	199.62	277.24	126.78
Merged-chr10-62578487-3	chr10	62577967	62578967	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-10.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	59.49	40.09	17.57	51.95	42.45	19.29	29.57	19.01	23.73
Merged-chr1-88705969-3	chr1	88705470	88706470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3779.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	8.58	13.36	3.7	23.62	19.59	16.88	21.12	21.67	16.24
Merged-chr15-85811694-3	chr15	85811190	85812190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164625)	promoter-TSS (NM_001164625)	7.0	NM_001164626	72355.0	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	100.68	102.75	76.77	109.98	127.82	108.51	144.7	126.02	51.84
Merged-chr6-99388845-3	chr6	99388358	99389358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	46487.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	8.01	3.69	3.7	10.8	6.06	9.65	5.28	7.07	3.75
Merged-chrM-13779-2	chrM	13279	14279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											209.37	211.96	15.72	119.43	55.51	29.74	126.74	38.03	43.09
Merged-chr2-57232558-3	chr2	57232050	57233050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5128.0	NM_001145820	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	129.86	112.89	55.5	118.08	126.42	76.36	96.11	110.98	42.47
Merged-chr13-49188112-3	chr13	49187604	49188604	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	CpG	557.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	594.36	489.35	330.21	641.66	531.82	323.12	450.99	565.09	229.83
Merged-chr15-80042347-3	chr15	80041850	80042850	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27542.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	129.86	130.86	120.24	153.16	113.83	134.23	154.2	161.83	79.94
Merged-chr13-21717631-3	chr13	21717142	21718142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178206)	promoter-TSS (NM_178206)	14.0	NM_178206	319152.0	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	82.95	101.83	61.97	71.52	85.37	73.95	108.79	141.94	51.21
Merged-chr2-157063587-3	chr2	157063108	157064108	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15657.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	40.62	24.88	39.77	57.35	31.72	51.44	32.74	21.67	21.86
Merged-chr10-7063205-3	chr10	7062749	7063749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40064.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	56.63	68.2	37.0	82.32	61.58	53.85	36.97	28.74	39.35
Merged-chr1-43933896-3	chr1	43933406	43934406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310540)	promoter-TSS (NM_001310540)	-88.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	459.93	517.46	418.08	447.34	583.14	385.82	401.35	495.67	286.66
Merged-chr4-133666367-2	chr4	133665864	133666864	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356466, intron 2 of 3)	L2|LINE|L2	6283.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	12.01	20.74	33.3	29.01	16.33	35.37	11.62	5.31	14.99
Merged-chr2-34802269-3	chr2	34801757	34802757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2345.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	394.72	335.45	201.64	348.15	363.88	208.98	261.93	314.38	134.9
Merged-chr7-45451514-3	chr7	45451000	45452000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030678, intron 12 of 15)	intron (NM_030678, intron 12 of 15)	8386.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	11.44	8.75	2.77	8.77	3.27	9.65	2.11	3.54	1.25
Merged-chr6-54075676-3	chr6	54075176	54076176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MLT1D|LTR|ERVL-MaLR	35744.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	44.62	25.34	22.2	36.43	33.59	31.35	46.47	49.08	25.61
Merged-chr5-139555979-3	chr5	139555510	139556510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12112.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	16.59	16.13	11.1	20.92	9.8	32.15	4.22	2.21	5.62
Merged-chr5-120165210-3	chr5	120164679	120165679	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-25916.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	50.34	50.69	51.8	50.6	33.59	55.46	49.64	16.8	43.09
Merged-chr8-31111720-3	chr8	31111247	31112247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175136)	promoter-TSS (NM_175136)	-99.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	53.2	59.44	72.15	55.33	40.59	54.66	63.37	49.08	39.97
Merged-chr3-108591304-3	chr3	108590787	108591787	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	9.0	NM_001358054	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	29.75	26.73	45.32	48.58	40.12	41.8	36.97	34.05	32.48
Merged-chr10-95236504-3	chr10	95236021	95237021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	87188.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	73.22	76.49	56.42	97.16	56.45	74.75	65.48	50.85	42.47
Merged-chr3-90000054-3	chr3	89999560	90000560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165984)	TTS (NM_001165984)	1300.0	NR_045749	100503469.0	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	184.77	193.07	101.74	172.73	125.96	98.06	147.87	179.08	88.68
Merged-chr11-3149633-2	chr11	3149159	3150159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	25638.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	28.03	23.96	34.22	23.62	35.92	63.5	2.11	0.44	73.07
Merged-chr9-23570347-3	chr9	23569843	23570843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	347267.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	7.44	4.15	0.92	6.75	7.93	8.04	5.28	0.44	1.25
Merged-chr11-109011869-3	chr11	109011376	109012376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	91527.0	NM_015732	12006.0	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	46.34	42.85	77.7	22.94	18.19	30.54	13.73	17.24	63.7
Merged-chr1-184484964-3	chr1	184484455	184485455	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72736.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	64.07	80.18	60.12	72.19	74.17	58.68	55.98	76.05	58.08
Merged-chr1-89069670-3	chr1	89069175	89070175	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	-740.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	86.38	96.3	90.65	116.73	109.16	131.82	147.87	128.67	76.19
Merged-chr7-132813825-3	chr7	132813303	132814303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	-607.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	154.45	146.07	103.59	167.33	128.76	122.98	124.63	107.0	68.7
Merged-chr13-112464056-3	chr13	112463570	112464570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010560)	promoter-TSS (NM_010560)	0.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	216.24	175.56	194.24	213.21	147.42	145.49	219.69	172.45	82.44
Merged-chr5-65764072-3	chr5	65763579	65764579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024917, intron 1 of 19)	CpG	558.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	237.97	162.66	170.19	186.22	156.75	167.99	173.21	106.56	108.67
Merged-chr4-88432609-3	chr4	88432101	88433101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	6325.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	34.32	24.88	24.05	37.78	25.19	26.53	41.19	47.75	18.11
Merged-chr18-80224495-3	chr18	80224000	80225000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025299, exon 4 of 4)	3' UTR (NM_025299, exon 4 of 4)	17633.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	73.22	116.12	98.05	85.69	106.36	94.04	28.52	19.9	28.73
Merged-chr5-135907490-1	chr5	135906990	135907990	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_018871)	TTS (NM_018871)	19571.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	75.51	62.21	54.57	188.25	150.68	130.21	94.0	57.92	43.09
Merged-chr3-19201508-3	chr3	19200997	19201997	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 2 of 7)	RSINE1|SINE|B4	13202.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.86	9.22	5.55	43.86	54.11	49.03	100.34	78.26	49.34
Merged-chr7-132576360-3	chr7	132575870	132576870	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	28.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	405.59	306.42	258.99	401.46	303.23	273.29	311.57	278.57	185.48
Merged-chr5-143315246-4	chr5	143314691	143315691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172726, exon 1 of 6)	5' UTR (NM_172726, exon 1 of 6)	169.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	74.94	75.11	69.37	87.71	73.71	93.24	81.33	48.2	54.33
Merged-chr5-28036973-2	chr5	28036492	28037492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34420.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	92.67	136.39	92.5	132.92	149.75	125.39	116.18	148.57	80.56
Merged-chr12-73603733-4	chr12	73603219	73604219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	18923.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	46.34	25.8	18.5	74.89	49.92	37.78	29.57	34.05	14.99
Merged-chr1-88257204-1	chr1	88256704	88257704	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 37 of 41)	MLT1A|LTR|ERVL-MaLR	12204.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	6.29	6.91	7.4	10.8	12.6	8.84	14.79	5.75	21.23
Merged-chr14-63103214-3	chr14	63102728	63103728	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19234.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	258.0	293.06	145.22	269.21	286.44	213.0	289.39	381.59	143.64
Merged-chr10-121739847-3	chr10	121739340	121740340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359720)	promoter-TSS (NM_001359720)	-90.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	210.52	159.89	79.55	213.21	175.87	167.19	214.41	183.06	97.43
Merged-chr10-40136182-3	chr10	40135669	40136669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	6085.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	78.37	54.83	45.32	78.94	57.85	69.93	74.99	63.23	30.6
Merged-chr19-12574247-3	chr19	12573733	12574733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026640, intron 1 of 3)	intron (NM_026640, intron 1 of 3)	708.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	165.32	233.62	215.51	141.69	180.54	203.36	208.07	244.96	165.5
Merged-chr9-103208032-3	chr9	103207540	103208540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133977)	TTS (NM_133977)	-5975.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	17.16	29.95	15.72	16.87	16.33	20.09	13.73	14.59	6.87
Merged-chr17-24351645-1	chr17	24351145	24352145	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013855)	promoter-TSS (NM_013855)	-378.0	NM_013855	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	37.76	19.81	20.35	31.71	18.66	19.29	71.82	63.67	29.35
Merged-chr11-77467258-3	chr11	77466710	77467710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139129, intron 4 of 8)	CpG	3297.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	8.58	4.15	0.92	4.72	4.2	2.41	4.22	4.42	4.37
Merged-chr8-106338094-3	chr8	106337596	106338596	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-108.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	28.03	54.37	24.97	31.71	33.12	35.37	49.64	63.23	30.6
Merged-chr9-123931907-3	chr9	123931407	123932407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36785.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	144.73	86.63	51.8	85.01	56.45	45.01	94.0	75.17	65.58
Merged-chr15-102671157-3	chr15	102670663	102671663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-116.0	NM_026468	67942.0	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	164.75	151.14	98.97	181.5	212.26	204.97	216.52	211.36	99.3
Merged-chr16-4913172-3	chr16	4912655	4913655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 4 of 17)	intron (NM_001357062, intron 4 of 17)	-25956.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	228.82	245.6	193.32	214.56	195.93	216.22	268.27	284.31	171.75
Merged-chr15-6267122-3	chr15	6266636	6267636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32653.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	24.03	29.49	15.72	25.64	23.33	22.51	39.08	33.6	37.47
Merged-chr10-99929395-3	chr10	99928912	99929912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-86409.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	34.32	35.48	33.3	29.69	19.59	35.37	36.97	46.43	29.35
Merged-chr12-111039227-3	chr12	111038748	111039748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-550.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	241.41	193.07	153.54	228.73	147.42	156.74	253.48	185.27	115.54
Merged-chr5-77310250-5	chr5	77309754	77310754	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	-168.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	33.18	50.23	35.15	51.95	48.52	90.02	48.58	72.52	36.85
Merged-chr10-105271421-3	chr10	105270926	105271926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	303053.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	23.45	26.26	10.17	34.41	16.79	11.25	45.42	45.1	16.24
Merged-chr19-5107076-3	chr19	5106584	5107584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029576)	promoter-TSS (NM_029576)	-88.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	59.49	54.83	108.22	67.47	44.78	72.34	85.55	50.85	48.71
Merged-chr10-128370799-3	chr10	128370294	128371294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-757.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	73.22	42.85	23.12	70.85	33.59	54.66	72.88	49.96	40.59
Merged-chr16-85124062-3	chr16	85123559	85124559	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	49648.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	116.7	121.65	98.05	144.39	110.56	86.81	94.0	97.28	59.33
Merged-chr1-95667677-3	chr1	95667178	95668178	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-84.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	107.55	99.53	61.05	112.0	97.97	75.56	69.71	99.05	66.82
Merged-chr15-83149763-3	chr15	83149278	83150278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178627)	promoter-TSS (NM_178627)	133.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	315.2	278.77	102.67	307.67	245.38	169.6	264.05	285.64	113.04
Merged-chr5-138441466-3	chr5	138440962	138441962	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028130)	promoter-TSS (NM_028130)	-14.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	49.77	47.46	50.87	43.18	44.32	44.21	69.71	43.77	46.84
Merged-chr18-20886584-3	chr18	20886081	20887081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa|LTR|ERVL-MaLR	9497.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	108.12	152.52	123.02	99.18	110.1	85.2	113.01	126.02	111.79
Merged-chr1-174031851-2	chr1	174031367	174032367	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172648)	promoter-TSS (NM_172648)	-112.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	5.72	5.07	0.0	65.45	53.18	58.68	71.82	76.49	39.35
Merged-chr14-21500670-3	chr14	21500176	21501176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 1 of 16)	CpG	891.0	NM_017479	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	272.3	238.23	197.02	242.22	183.34	184.87	268.27	201.63	101.17
Merged-chr12-91588497-3	chr12	91588020	91589020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	CpG	1129.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	319.78	336.83	269.16	301.6	287.84	208.98	271.44	327.65	202.35
Merged-chr9-7837922-1	chr9	7837422	7838422	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007465)	promoter-TSS (NM_007465)	-865.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	229.39	297.21	166.49	221.98	246.32	139.06	320.02	329.41	153.01
Merged-chr4-123914800-3	chr4	123914304	123915304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	28.03	41.93	24.97	36.43	34.52	42.6	27.46	38.47	26.85
Merged-chr19-53944661-3	chr19	53944168	53945168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	-41.0	NM_001195338	100503572.0	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	194.5	186.16	148.92	132.92	122.23	134.23	160.54	139.28	110.54
Merged-chr5-63828947-3	chr5	63828448	63829448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	16453.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	73.79	80.64	44.4	71.52	76.04	106.1	115.12	128.23	109.29
Merged-chr5-147076645-3	chr5	147076150	147077150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181730)	promoter-TSS (NM_181730)	-78.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	209.37	186.62	168.34	214.56	154.88	173.62	91.89	70.75	56.21
Merged-chr11-101543675-3	chr11	101543165	101544165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	8290.0	NM_009764	12189.0	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	104.69	85.71	57.35	110.65	96.1	81.18	74.99	72.07	36.85
Merged-chr4-150011949-3	chr4	150011431	150012431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2908.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	72.08	62.67	86.02	67.47	41.52	93.24	81.33	72.07	74.94
Merged-chr17-5798649-3	chr17	5798119	5799119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045081)	promoter-TSS (NR_045081)	-38.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	85.24	98.15	68.45	82.32	69.04	88.42	114.07	136.19	65.58
Merged-chr10-100032773-3	chr10	100032272	100033272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	16951.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	102.97	118.88	64.75	109.98	134.35	87.61	83.44	110.1	57.46
Merged-chr10-69186471-2	chr10	69185985	69186985	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22067.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	25.17	25.8	34.22	29.69	23.79	39.39	48.58	42.01	39.35
Merged-chr11-19929318-3	chr11	19928826	19929826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	4884.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	36.04	42.39	19.42	32.39	19.13	17.68	10.56	10.17	8.74
Merged-chr6-115601947-3	chr6	115601474	115602474	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023290)	promoter-TSS (NM_023290)	36.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	91.53	86.63	55.5	93.79	77.91	72.34	104.56	82.24	46.84
Merged-chr6-125231737-3	chr6	125231217	125232217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286753)	TTS (NM_001286753)	143.0	NM_145391	213233.0	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	206.51	225.32	121.17	206.46	214.59	192.91	193.28	247.61	95.55
Merged-chr10-128498863-3	chr10	128498396	128499396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131150)	promoter-TSS (NR_131150)	-211.0	NM_172259	216459.0	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	62.35	55.75	72.15	64.1	53.65	61.89	89.78	87.11	51.21
Merged-chr1-180777776-3	chr1	180777272	180778272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35833.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	133.29	132.25	147.99	131.57	140.42	166.38	161.6	193.67	106.79
Merged-chr15-59649223-3	chr15	59648720	59649720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144549, exon 1 of 3)	exon (NM_144549, exon 1 of 3)	566.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	328.36	441.43	406.05	354.9	445.05	391.44	327.42	398.39	282.29
Merged-chr17-71125651-3	chr17	71125161	71126161	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 36 of 36)	intron (NM_001083934, intron 36 of 36)	-57871.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	37.18	18.43	9.25	31.71	19.59	22.51	11.62	19.01	16.86
Merged-chr8-126852323-3	chr8	126851826	126852826	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151740)	TTS (NR_151740)	3306.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	231.11	223.02	171.12	253.69	256.11	245.96	220.74	279.01	153.63
Merged-chr17-66220557-3	chr17	66220063	66221063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97043.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	30.89	34.56	44.4	31.71	37.79	54.66	52.81	47.31	18.74
Merged-chr3-31095772-3	chr3	31095292	31096292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 1 of 6)	intron (NM_001039090, intron 1 of 6)	734.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	499.97	471.84	397.73	435.19	392.33	344.83	501.69	586.31	228.58
Merged-chr14-48446279-3	chr14	48445790	48446790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172600)	promoter-TSS (NM_172600)	-62.0	NM_172600	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	156.74	141.46	123.94	134.27	112.43	106.9	198.56	116.73	93.68
Merged-chr2-165055188-3	chr2	165054687	165055687	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-449.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	129.86	76.49	76.77	96.48	51.32	83.59	113.01	111.43	81.81
Merged-chr12-69486226-3	chr12	69485747	69486747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10697.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	31.46	19.35	17.57	62.07	37.79	27.33	46.47	38.47	17.49
Merged-chr14-47649262-3	chr14	47648798	47649798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-13.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	127.0	119.8	96.2	161.93	127.36	118.16	110.9	69.42	54.96
Merged-chr8-84198559-3	chr8	84198065	84199065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9953.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	350.67	192.15	140.59	300.92	163.74	135.04	175.33	144.15	108.04
Merged-chr11-80087025-3	chr11	80086549	80087549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	30.89	41.93	23.12	33.74	14.0	21.7	28.52	32.72	43.09
Merged-chr9-21033362-3	chr9	21032879	21033879	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008319, intron 2 of 10)	CpG	-1051.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	20.02	17.05	24.97	20.92	20.06	16.88	15.84	21.22	10.62
Merged-chr14-15228192-1	chr14	15227692	15228692	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-209431.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	5.15	13.36	3.7	1.35	3.73	6.43	9.51	5.75	5.62
Merged-chr5-38505539-3	chr5	38505043	38506043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3391.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	30.89	32.25	43.47	35.09	28.92	32.15	48.58	65.0	42.47
Merged-chr8-34878800-3	chr8	34878294	34879294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 5 of 26)	intron (NM_175091, intron 5 of 26)	71184.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	14.87	14.75	14.8	17.54	22.39	16.08	12.67	8.84	10.62
Merged-chr7-67645325-3	chr7	67644829	67645829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175124)	promoter-TSS (NM_175124)	-93.0	NR_028143	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	139.58	170.49	126.72	112.0	138.55	129.41	132.02	100.81	99.3
Merged-chr3-79844159-3	chr3	79843627	79844627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1465.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	49.2	29.49	26.82	41.83	23.79	47.42	53.87	39.8	41.22
Merged-chr8-66486543-3	chr8	66486057	66487057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	-27.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	37.18	18.89	23.12	33.74	20.99	24.11	35.91	25.2	11.87
Merged-chr3-88142658-1	chr3	88142158	88143158	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133665, exon 1 of 11)	5' UTR (NM_133665, exon 1 of 11)	286.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	453.64	281.54	290.44	459.48	263.58	266.86	345.37	272.82	174.87
Merged-chr2-155276874-3	chr2	155276371	155277371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046364, intron 1 of 2)	CpG	507.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	344.38	205.97	167.42	360.3	225.79	212.2	238.7	152.99	109.29
Merged-chr15-76246802-3	chr15	76246318	76247318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023168)	promoter-TSS (NM_023168)	11.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	97.25	83.4	102.67	108.63	81.17	126.19	133.08	80.92	63.7
Merged-chr1-56973193-4	chr1	56972691	56973691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	1722.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	23.45	14.28	25.9	29.69	21.46	38.58	36.97	17.69	23.73
Merged-chr2-132269415-3	chr2	132268927	132269927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	6279.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	76.66	47.92	18.5	65.45	47.12	50.64	58.09	57.48	26.23
Merged-chr3-37204169-3	chr3	37203650	37204650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21265.0	NR_153188	102639848.0	Mm.424479	NR_153188		Gm12532	-	predicted gene 12532	ncRNA	4.0	5.99	1.85	7.42	2.33	4.82	5.28	5.75	3.75
Merged-chr8-13890316-3	chr8	13889795	13890795	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025556)	promoter-TSS (NM_025556)	-24.0	NM_025556	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	92.1	46.08	31.45	98.51	89.1	69.13	73.93	50.85	28.73
Merged-chr16-4908091-3	chr16	4907582	4908582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21982.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	85.81	86.63	83.25	97.83	69.51	86.81	102.45	128.23	66.82
Merged-chr13-99187671-3	chr13	99187162	99188162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2839.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	106.97	81.56	75.85	89.74	62.51	81.18	132.02	124.69	46.84
Merged-chr4-126429632-3	chr4	126429138	126430138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-96.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	371.26	394.43	400.5	321.84	296.7	283.74	334.81	374.52	216.71
Merged-chr1-20951542-3	chr1	20951006	20952006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027974)	promoter-TSS (NM_027974)	-120.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	12.59	25.34	11.1	16.19	14.46	12.86	1.06	3.54	2.5
Merged-chr18-84589062-3	chr18	84588527	84589527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 1 of 8)	CpG	477.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	74.94	61.28	97.12	64.77	62.05	85.2	77.1	34.49	61.2
Merged-chr17-63501294-1	chr17	63500794	63501794	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015794)	promoter-TSS (NM_015794)	-714.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	18.88	16.59	18.5	19.57	25.19	27.33	11.62	5.75	9.37
Merged-chr4-142084040-4	chr4	142083550	142084550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027137)	promoter-TSS (NR_027137)	-248.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	161.32	144.69	135.97	139.67	153.48	118.96	178.5	221.08	66.2
Merged-chr10-96338246-3	chr10	96337729	96338729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112022.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	134.43	106.9	50.87	120.77	90.04	98.87	114.07	72.07	55.58
Merged-chr14-73237930-3	chr14	73237434	73238434	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175116)	promoter-TSS (NM_175116)	43.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	161.89	177.86	121.17	131.57	128.29	119.76	125.69	179.52	104.92
Merged-chr11-80177792-1	chr11	80177292	80178292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6080.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	155.03	144.23	135.97	186.9	95.63	138.25	141.53	166.7	110.54
Merged-chr11-70786110-3	chr11	70785627	70786627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21680.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	341.52	314.25	161.87	327.91	181.01	216.22	279.89	369.21	163.0
Merged-chr7-127875775-3	chr7	127875271	127876271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-129.0	NM_001362191	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	64.07	97.69	137.82	117.4	109.16	145.49	109.84	93.74	81.81
Merged-chr13-45950688-3	chr13	45950174	45951174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	14317.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	52.63	40.09	30.52	41.83	27.06	39.39	36.97	35.37	21.23
Merged-chr19-21913205-3	chr19	21912727	21913727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134887.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	139.01	148.83	70.3	111.33	94.23	89.22	152.09	150.34	94.3
Merged-chr17-56074654-3	chr17	56074167	56075167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024432, intron 2 of 11)	CpG	4666.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	188.78	161.74	185.92	187.57	156.28	143.07	188.0	181.29	93.68
Merged-chr1-55029010-3	chr1	55028507	55029507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-1529.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	209.94	213.8	159.09	197.69	174.94	188.09	210.18	212.24	139.27
Merged-chr7-92980978-3	chr7	92980467	92981467	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98912.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	35.47	22.12	23.12	33.06	27.99	35.37	25.35	22.11	14.36
Merged-chr11-59208302-3	chr11	59207815	59208815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024210)	promoter-TSS (NM_024210)	-46.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	231.11	235.92	238.64	209.16	192.67	231.49	192.23	202.95	169.87
Merged-chr13-56593425-3	chr13	56592910	56593910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16176.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	25.17	29.03	18.5	28.34	22.39	33.76	31.69	29.18	38.72
Merged-chr2-44981814-3	chr2	44981309	44982309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	41368.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	27.46	14.75	19.42	22.27	10.26	23.31	6.34	7.96	9.99
Merged-chr2-77197301-3	chr2	77196793	77197793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 12 of 17)	intron (NM_175465, intron 12 of 17)	-26658.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	31.46	22.12	16.65	26.31	26.12	18.49	20.07	19.46	17.49
Merged-chr11-59809203-3	chr11	59808701	59809701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045686)	promoter-TSS (NR_045686)	400.0	NM_001271357	216805.0	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	338.08	308.73	187.77	282.71	367.14	211.4	260.88	341.8	174.24
Merged-chrX-108832844-3	chrX	108832349	108833349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081477, intron 4 of 40)	intron (NM_001081477, intron 4 of 40)	1506.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	78.37	81.1	64.75	80.97	55.05	72.34	114.07	94.18	63.7
Merged-chr12-99627967-3	chr12	99627424	99628424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045288)	promoter-TSS (NR_045288)	50.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	221.96	201.36	151.69	225.36	231.85	161.56	231.3	221.53	130.53
Merged-chr4-149792422-3	chr4	149791917	149792917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18150.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	260.28	214.26	103.59	228.73	177.27	133.43	184.83	264.42	94.93
Merged-chr1-86381203-3	chr1	86380701	86381701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6940.0	NM_010341	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	16.02	2.3	0.0	18.89	11.66	5.63	8.45	19.9	3.75
Merged-chr1-191328167-3	chr1	191327695	191328695	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025864, exon 2 of 8)	exon (NM_025864, exon 2 of 8)	2230.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	226.53	203.21	159.09	188.92	164.68	143.07	227.08	292.27	131.78
Merged-chr2-118158288-3	chr2	118157769	118158769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46393.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	45.19	69.12	53.65	49.93	38.25	52.25	45.42	67.65	50.59
Merged-chr13-60356354-3	chr13	60355876	60356876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150905.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	50.34	42.85	29.6	43.18	37.32	54.66	44.36	48.64	53.08
Merged-chr16-17210200-3	chr16	17209702	17210702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	2067.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	5.72	3.69	1.85	4.72	2.8	14.47	3.17	2.21	2.5
Merged-chr9-40814224-3	chr9	40813721	40814721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12948.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	25.74	35.48	7.4	26.31	18.19	11.25	115.12	106.56	31.85
Merged-chr14-54894025-3	chr14	54893560	54894560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019402)	promoter-TSS (NM_019402)	-83.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	249.42	208.74	127.64	215.23	151.62	151.92	226.02	148.13	121.78
Merged-chr13-21753521-1	chr13	21753021	21754021	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178201)	promoter-TSS (NM_178201)	391.0	NM_178183	319169.0	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	114.98	123.95	128.57	109.98	94.23	106.1	155.26	174.21	107.42
Merged-chr6-91515918-3	chr6	91515425	91516425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026309)	promoter-TSS (NM_026309)	-37.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	87.52	72.8	35.15	78.94	90.97	67.52	90.83	77.38	43.09
Merged-chr8-71542823-3	chr8	71542323	71543323	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-107.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	54.92	45.16	56.42	85.69	63.45	90.83	80.27	81.36	57.46
Merged-chr10-18055528-3	chr10	18055060	18056060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111065)	promoter-TSS (NM_001111065)	-380.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	55.49	39.63	66.6	78.94	48.05	52.25	69.71	28.3	43.09
Merged-chr13-97205273-3	chr13	97204860	97205860	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7003.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	60.07	55.75	50.87	43.86	36.85	53.85	54.92	61.46	41.22
Merged-chr12-100626795-3	chr12	100626283	100627283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 3 of 17)	L1M4b|LINE|L1	98337.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	76.08	122.57	94.35	72.87	70.91	82.79	73.93	105.24	76.19
Merged-chr2-75704014-3	chr2	75703556	75704556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	CpG	607.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	556.04	557.55	431.95	611.29	647.98	376.98	436.2	501.86	291.03
Merged-chr6-29211934-2	chr6	29211444	29212444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302934, intron 2 of 14)	intron (NM_001302934, intron 2 of 14)	353.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	135.0	66.35	65.67	147.09	71.84	61.09	140.47	75.17	56.83
Merged-chr12-80113041-3	chr12	80112537	80113537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-24.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	147.02	112.43	85.1	145.74	108.7	90.83	121.46	121.6	46.84
Merged-chr10-88681157-3	chr10	88680642	88681642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 1 of 5)	B4A|SINE|B4	1881.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	138.44	137.77	43.47	190.27	139.49	89.22	200.68	187.04	96.8
Merged-chr3-79562005-3	chr3	79561502	79562502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	5677.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	21.74	16.13	12.95	20.24	18.19	12.06	14.79	15.48	12.49
Merged-chr19-47579589-5	chr19	47579075	47580075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009289)	promoter-TSS (NM_009289)	-444.0	NM_009289	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	81.23	56.68	63.82	75.57	43.39	81.99	95.06	27.86	28.73
Merged-chr5-77191860-3	chr5	77191367	77192367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19338.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	34.32	48.38	27.75	2.7	6.53	11.25	34.85	19.01	19.36
Merged-chr19-56722850-3	chr19	56722363	56723363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007419, exon 1 of 1)	exon (NM_007419, exon 1 of 1)	491.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	231.68	197.22	212.74	200.39	164.68	217.83	236.59	177.31	141.14
Merged-chrX-166478825-3	chrX	166478413	166479413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019773, intron 1 of 2)	intron (NM_019773, intron 1 of 2)	954.0	NM_019773	56382.0	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	231.11	248.82	134.12	282.71	284.57	149.5	241.87	290.95	104.92
Merged-chr10-79984401-3	chr10	79983950	79984950	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003949)	promoter-TSS (NM_001003949)	-190.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	161.32	128.56	151.69	165.98	104.03	157.54	195.39	208.26	109.92
Merged-chr2-32451502-3	chr2	32450977	32451977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164357)	promoter-TSS (NM_001164357)	-7.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	180.77	201.36	198.87	180.82	147.88	142.27	192.23	256.46	128.03
Merged-chr1-181212092-3	chr1	181211685	181212685	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145514)	promoter-TSS (NM_145514)	-207.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	397.01	290.75	333.91	349.5	282.24	232.29	339.04	241.87	211.09
Merged-chr1-74370102-3	chr1	74369617	74370617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033345)	TTS (NM_001033345)	-5086.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	106.4	69.12	84.17	68.15	37.79	51.44	83.44	70.3	64.95
Merged-chr2-77304741-3	chr2	77304247	77305247	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24155.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	18.88	18.43	12.95	26.99	19.13	22.51	22.18	17.69	13.12
Merged-chr15-97964128-3	chr15	97963624	97964624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252153)	promoter-TSS (NM_001252153)	-105.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	106.4	103.22	110.07	149.79	136.69	166.38	137.3	141.49	78.69
Merged-chr18-82826330-3	chr18	82825822	82826822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29575.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	33.75	30.87	7.4	62.75	57.38	36.97	35.91	29.18	18.11
Merged-chr10-61114371-3	chr10	61113871	61114871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 4 of 14)	intron (NM_009163, intron 4 of 14)	25040.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	56.06	64.05	44.4	59.38	33.59	47.42	46.47	41.56	41.84
Merged-chr9-27098198-1	chr9	27097698	27098698	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_023277, exon 9 of 9)	3' UTR (NM_023277, exon 9 of 9)	57223.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	12.59	5.99	18.5	4.05	3.27	1.61	8.45	3.1	8.74
Merged-chr4-140988803-3	chr4	140988298	140989298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	1925.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	181.34	148.83	151.69	189.6	163.74	180.05	219.69	254.25	127.4
Merged-chr2-19344050-3	chr2	19343567	19344567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126563)	promoter-TSS (NR_126563)	-250.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	48.62	64.05	37.92	62.75	51.32	57.87	47.53	52.62	43.09
Merged-chr11-50134311-3	chr11	50133809	50134809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 1 of 20)	Arthur1|DNA|hAT-Tip100	2949.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	54.35	39.63	14.8	91.09	50.38	49.83	58.09	40.24	21.23
Merged-chr7-123124046-3	chr7	123123554	123124554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144925, exon 1 of 24)	5' UTR (NM_144925, exon 1 of 24)	169.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	243.69	305.5	168.34	233.45	227.66	173.62	207.01	182.17	114.91
Merged-chr10-25321358-3	chr10	25320861	25321861	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-22198.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	16.59	6.45	6.47	32.39	14.0	16.08	20.07	15.48	8.74
Merged-chr17-29381640-3	chr17	29381146	29382146	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20732.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	92.67	86.63	95.27	64.77	55.05	81.18	71.82	87.55	41.22
Merged-chr9-35267829-3	chr9	35267369	35268369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	-12.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	102.97	94.92	109.14	117.4	80.24	131.02	77.1	83.13	60.58
Merged-chr12-73607717-3	chr12	73607239	73608239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	22943.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	121.85	105.98	104.52	143.71	108.23	124.59	121.46	145.92	77.44
Merged-chr7-128379587-3	chr7	128379107	128380107	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 4 of 4)	intron (NM_026418, intron 4 of 4)	38565.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	223.1	238.69	146.14	245.6	243.05	192.11	207.01	307.31	125.53
Merged-chr8-39619042-3	chr8	39618546	39619546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 5 of 9)	intron (NM_001113326, intron 5 of 9)	23632.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	22.88	54.37	26.82	32.39	47.12	47.42	64.43	78.26	53.08
Merged-chr5-108692486-3	chr5	108691994	108692994	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NM_001164259	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	5.15	3.69	2.77	2.7	2.33	7.23	4.22	2.21	2.5
Merged-chr10-81605191-3	chr10	81604689	81605689	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1119.0	NR_030677	268319.0	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	61.21	58.98	35.15	55.33	50.38	47.42	80.27	82.24	38.1
Merged-chr6-52158281-3	chr6	52157773	52158773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	44.0	NM_010449	15394.0	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	85.81	54.83	42.55	43.86	25.66	36.97	81.33	43.77	44.97
Merged-chr1-131438728-3	chr1	131438227	131439227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88634.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	108.12	91.24	54.57	100.53	68.58	62.7	77.1	104.35	63.08
Merged-chr2-167769964-3	chr2	167769469	167770469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78792.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	104.69	96.3	105.44	114.7	93.77	102.08	153.15	117.62	69.32
Merged-chr7-127296267-3	chr7	127295769	127296769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008400)	promoter-TSS (NM_008400)	9.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	90.96	83.4	74.0	85.01	53.65	93.24	102.45	72.07	68.07
Merged-chr12-113075258-3	chr12	113074759	113075759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291444)	TTS (NM_001291444)	757.0	NM_001361920	75671.0	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	23.45	10.14	38.85	21.59	15.86	38.58	21.12	22.11	24.36
Merged-chr4-133479988-3	chr4	133479486	133480486	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175307)	promoter-TSS (NM_175307)	-147.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	7.44	4.15	7.4	16.19	8.86	6.43	11.62	3.98	1.87
Merged-chr17-46163140-3	chr17	46162673	46163673	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357745, intron 1 of 11)	intron (NM_001357745, intron 1 of 11)	1109.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	98.39	98.15	84.17	65.45	61.58	61.09	90.83	118.94	58.08
Merged-chr13-67778642-1	chr13	67778142	67779142	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1051.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	4.58	2.3	0.92	4.05	4.67	4.82	154.2	186.59	63.7
Merged-chr18-35599178-3	chr18	35598670	35599670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357471, intron 1 of 3)	CpG	553.0	NM_001357472	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	193.93	246.52	187.77	169.35	219.26	204.16	212.29	200.3	123.66
Merged-chr15-75086864-3	chr15	75086375	75087375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25062.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	324.93	399.5	488.38	450.04	572.41	603.65	294.68	271.05	380.96
Merged-chr11-70468840-3	chr11	70468327	70469327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8843.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	211.09	183.39	151.69	176.1	147.88	187.28	184.83	217.99	109.29
Merged-chr4-128610180-3	chr4	128609690	128610690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-92.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	81.23	70.96	62.9	66.12	55.98	65.11	55.98	69.42	37.47
Merged-chr7-30280482-3	chr7	30279986	30280986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146186)	promoter-TSS (NM_146186)	-65.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	280.88	263.57	205.34	312.39	259.85	256.41	212.29	257.34	110.54
Merged-chrX-7648988-3	chrX	7648494	7649494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009305, intron 6 of 6)	intron (NM_009305, intron 6 of 6)	-8385.0	NM_001290624	54630.0	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Pk3|Sfc16	prickle planar cell polarity protein 3	protein-coding	56.63	90.77	86.02	72.87	69.51	55.46	76.05	65.0	61.2
Merged-chr3-88618319-3	chr3	88617822	88618822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198911, intron 2 of 22)	intron (NM_001198911, intron 2 of 22)	2115.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	60.07	71.42	62.9	59.38	30.32	52.25	44.36	35.82	53.08
Merged-chr6-71950826-3	chr6	71950328	71951328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009088, exon 18 of 34)	exon (NM_009088, exon 18 of 34)	41775.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	25.17	34.56	48.1	16.19	19.59	28.94	22.18	23.88	9.99
Merged-chr6-127453654-3	chr6	127453159	127454159	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346512)	promoter-TSS (NM_001346512)	32.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	185.92	214.73	123.02	183.52	160.95	117.35	248.2	195.88	140.52
Merged-chr2-124928093-3	chr2	124927608	124928608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140019.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	163.61	154.36	81.4	167.33	195.93	106.1	101.39	114.96	70.57
Merged-chr9-105502566-1	chr9	105502066	105503066	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	-7433.0	NM_001253836	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	1.14	1.84	3.7	2.7	3.73	1.61	21.12	22.99	30.6
Merged-chr4-133888013-6	chr4	133887494	133888494	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285505)	promoter-TSS (NM_001285505)	-197.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	159.03	126.25	81.4	152.49	127.36	116.55	96.11	72.52	40.59
Merged-chr7-110109344-3	chr7	110108831	110109831	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12728.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	35.47	11.98	19.42	47.23	28.92	10.45	33.8	26.09	11.24
Merged-chr16-5049972-3	chr16	5049469	5050469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	-59.0	NM_028720	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	444.49	506.4	380.16	400.11	548.15	355.27	381.28	451.45	267.3
Merged-chr14-103477419-3	chr14	103476907	103477907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35934.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	95.53	107.82	97.12	87.04	86.77	91.63	109.84	129.11	124.28
Merged-chr6-146616785-2	chr6	146616283	146617283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 6 of 11)	MTE2b|LTR|ERVL-MaLR	17809.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	56.63	41.93	40.7	89.06	68.58	50.64	3.17	3.1	2.5
Merged-chr9-63731596-3	chr9	63731095	63732095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	26399.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	53.77	42.85	49.02	55.33	38.25	32.15	50.7	35.37	31.23
Merged-chr1-192753487-3	chr1	192753006	192754006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	17713.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	60.07	84.32	58.27	24.96	22.39	25.72	64.43	62.35	48.09
Merged-chr3-9350018-3	chr3	9349499	9350499	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53079.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	14.87	12.9	27.75	14.17	8.4	21.7	9.51	3.98	2.5
Merged-chr13-47226079-3	chr13	47225597	47226597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	MER54A|LTR|ERVL	32094.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	201.36	180.17	130.42	203.09	151.62	138.25	184.83	137.51	129.9
Merged-chr10-21777344-3	chr10	21776845	21777845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	86500.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	16.59	12.9	11.1	26.99	9.8	15.27	20.07	11.5	3.75
Merged-chr8-69272624-1	chr8	69272124	69273124	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	1544.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	5.15	9.68	3.7	25.64	20.06	19.29	14.79	4.86	5.0
Merged-chr15-83145713-3	chr15	83145205	83146205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 1 of 7)	intron (NM_001347082, intron 1 of 7)	3673.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	36.61	30.87	25.9	47.9	19.59	39.39	52.81	44.66	26.85
Merged-chr3-103728152-3	chr3	103727678	103728678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9823.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	14.87	5.99	1.85	16.87	3.73	7.23	12.67	12.38	7.49
Merged-chr11-52000771-3	chr11	52000241	52001241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009458)	promoter-TSS (NM_009458)	-275.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	443.91	353.42	236.79	411.58	364.81	245.96	369.66	378.5	179.24
Merged-chr8-79639266-3	chr8	79638762	79639762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256033)	promoter-TSS (NM_001256033)	-414.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	248.27	253.89	244.19	250.99	266.84	228.28	250.32	227.27	137.4
Merged-chr7-126649494-3	chr7	126648968	126649968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029339, exon 1 of 10)	5' UTR (NM_029339, exon 1 of 10)	159.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	121.85	91.7	108.22	120.77	115.23	119.76	114.07	137.07	87.43
Merged-chr5-140617952-3	chr5	140617436	140618436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10595.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	165.32	166.34	139.67	193.64	147.42	189.69	173.21	189.25	86.81
Merged-chr19-6980524-3	chr19	6979995	6980995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360286)	promoter-TSS (NM_001360286)	-31.0	NM_001166368	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	399.87	304.58	228.46	389.99	259.85	255.6	328.47	320.57	144.89
Merged-chr15-79357705-3	chr15	79357206	79358206	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001304830, exon 3 of 3)	exon (NM_001304830, exon 3 of 3)	9304.0	NM_001304832	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	125.28	32.25	15.72	127.52	26.59	34.56	214.41	159.18	92.43
Merged-chr15-13423630-3	chr15	13423120	13424120	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249945.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	18.31	15.67	11.1	12.82	13.53	24.11	11.62	9.73	14.36
Merged-chr10-44474423-3	chr10	44473912	44474912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15664.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	18.88	10.6	3.7	23.62	11.2	13.66	16.9	11.5	24.36
Merged-chr9-119894834-3	chr9	119894366	119895366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026236)	promoter-TSS (NM_026236)	-29.0	NM_026236	67561.0	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	112.12	84.32	135.04	131.57	59.71	106.1	188.0	56.6	70.57
Merged-chr9-88858970-3	chr9	88858471	88859471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037982)	promoter-TSS (NR_037982)	-101.0	NR_037983	319673.0	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	14.87	21.2	20.35	20.92	23.79	24.92	13.73	20.78	15.61
Merged-chr12-99392154-3	chr12	99391641	99392641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	CpG	57933.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	209.37	188.46	81.4	168.0	152.08	90.83	92.94	137.07	68.07
Merged-chr14-52104285-3	chr14	52103773	52104773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360176)	promoter-TSS (NM_001360176)	-252.0	NM_001360180	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	223.1	211.96	136.89	211.86	188.0	178.44	176.38	167.58	98.05
Merged-chr16-16099955-3	chr16	16099441	16100441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	46910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	16.59	10.14	9.25	10.12	14.0	12.06	9.51	6.19	8.74
Merged-chr9-77931087-3	chr9	77930598	77931598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	13733.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	39.47	25.34	33.3	46.56	29.86	32.96	43.3	28.74	21.23
Merged-chr9-118763036-3	chr9	118762575	118763575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	51383.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	74.37	54.83	48.1	97.83	61.11	59.48	90.83	59.69	26.85
Merged-chr4-119294651-3	chr4	119294171	119295171	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011732)	promoter-TSS (NM_011732)	-158.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	188.78	187.54	160.02	219.96	149.75	176.83	179.55	127.34	119.28
Merged-chr9-61702599-3	chr9	61702069	61703069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211941.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	140.15	184.77	95.27	163.28	149.75	86.81	124.63	172.45	88.68
Merged-chr14-66183327-3	chr14	66182829	66183829	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	RLTR49|LTR|ERVK	30495.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	133.86	108.28	93.42	87.71	52.25	65.11	119.35	160.51	50.59
Merged-chr13-30604124-3	chr13	30603633	30604633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10910.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	9.72	8.29	9.25	26.31	7.0	12.06	10.56	5.31	6.25
Merged-chr11-118349068-3	chr11	118348579	118349579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	6332.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	46.34	39.17	40.7	41.83	32.19	73.14	48.58	47.75	38.1
Merged-chr11-3159547-2	chr11	3159050	3160050	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 10 of 32)	MTD|LTR|ERVL-MaLR	33913.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	74.94	102.75	125.79	91.76	129.22	174.42	0.0	0.44	161.75
Merged-chr18-53254641-3	chr18	53254095	53255095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	8933.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	212.8	230.39	159.09	240.87	211.79	172.01	228.14	234.35	98.68
Merged-chr6-129351362-3	chr6	129350891	129351891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 1 of 5)	intron (NM_177686, intron 1 of 5)	1147.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	136.15	141.92	86.95	159.23	108.7	68.32	188.0	199.42	88.68
Merged-chr8-107588473-3	chr8	107587968	107588968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	14.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	172.19	208.74	108.22	151.81	213.66	131.82	179.55	164.93	113.04
Merged-chr12-91590228-5	chr12	91589691	91590691	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031391)	promoter-TSS (NM_031391)	296.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	310.63	243.29	155.39	283.38	301.36	201.75	232.36	244.52	162.38
Merged-chr9-63721723-3	chr9	63721227	63722227	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	36267.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	8.01	2.76	12.02	11.47	6.53	1.61	24.29	2.65	6.25
Merged-chr18-77794714-3	chr18	77794215	77795215	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152167, exon 3 of 3)	non-coding (NR_152167, exon 3 of 3)	165.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	156.74	123.49	72.15	138.99	91.9	120.57	152.09	127.34	87.43
Merged-chr1-39847248-3	chr1	39846760	39847760	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040465)	promoter-TSS (NR_040465)	70.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	18.88	11.52	7.4	22.94	7.0	17.68	19.01	9.29	7.49
Merged-chr1-88702184-3	chr1	88701707	88702707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177305)	promoter-TSS (NM_177305)	-16.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	272.87	258.5	271.01	277.98	210.4	245.96	213.35	220.2	166.12
Merged-chr2-152766615-3	chr2	152766116	152767116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289739, intron 3 of 4)	intron (NM_001289739, intron 3 of 4)	12443.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	9.15	7.83	22.2	8.77	0.93	4.82	8.45	1.33	0.0
Merged-chr2-31759921-3	chr2	31759418	31760418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283045)	promoter-TSS (NM_001283045)	-21.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	126.42	134.09	139.67	115.38	101.7	147.9	127.8	118.94	95.55
Merged-chr10-87956725-3	chr10	87956217	87957217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9954.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	36.04	53.45	35.15	53.3	36.39	23.31	69.71	72.52	36.85
Merged-chr18-38631739-3	chr18	38631242	38632242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30474.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	7.44	5.07	7.4	10.8	3.27	1.61	2.11	0.88	3.12
Merged-chr5-121594086-3	chr5	121593595	121594595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308450)	promoter-TSS (NM_001308450)	-271.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	131.57	132.71	103.59	134.27	161.88	131.02	154.2	190.57	92.43
Merged-chrX-12091191-3	chrX	12090680	12091680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-10627.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	60.07	41.01	42.55	56.68	28.46	50.64	36.97	17.24	29.35
Merged-chr2-129380950-3	chr2	129380461	129381461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	211.66	228.55	100.82	199.04	139.49	149.5	135.19	183.06	114.91
Merged-chr15-76722774-3	chr15	76722248	76723248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-575.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	47.48	26.26	24.97	33.06	24.26	33.76	45.42	37.58	18.11
Merged-chr1-176853423-3	chr1	176852944	176853944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-17311.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	20.59	14.75	5.55	18.89	12.6	8.84	9.51	12.82	7.49
Merged-chr4-126086212-3	chr4	126085730	126086730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172701, intron 7 of 9)	intron (NM_172701, intron 7 of 9)	-10423.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	10.87	6.91	7.4	7.42	3.73	25.72	10.56	14.59	21.23
Merged-chr10-78009842-3	chr10	78009350	78010350	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008826)	promoter-TSS (NM_008826)	-43.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	107.55	110.59	93.42	143.71	138.09	127.8	120.41	150.34	111.17
Merged-chrX-71296229-3	chrX	71295744	71296744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164190, exon 10 of 15)	exon (NM_001164190, exon 10 of 15)	-68516.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	29.75	42.39	7.4	18.89	20.06	13.66	20.07	18.13	18.74
Merged-chrX-36903529-3	chrX	36903027	36904027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029891)	promoter-TSS (NM_029891)	-628.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	53.2	57.6	40.7	44.53	51.78	42.6	38.02	42.01	32.48
Merged-chr5-76184443-3	chr5	76183934	76184934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011626, intron 1 of 5)	CpG	554.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	116.13	112.43	118.39	103.91	77.91	101.28	114.07	63.23	60.58
Merged-chr7-66109373-3	chr7	66108875	66109875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081163)	promoter-TSS (NM_001081163)	-140.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	39.47	27.19	41.62	47.9	32.19	55.46	50.7	33.6	36.22
Merged-chr1-92906964-3	chr1	92906479	92907479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-10.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	75.51	95.38	134.12	77.59	79.31	66.71	120.41	115.41	73.69
Merged-chr15-31339077-1	chr15	31338577	31339577	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	L1MB4|LINE|L1	28682.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.29	4.15	0.0	10.8	4.67	3.22	3.17	2.65	6.87
Merged-chr10-59702543-3	chr10	59702064	59703064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291443)	promoter-TSS (NM_001291443)	1.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	57.78	50.23	38.85	39.13	43.85	35.37	42.25	42.45	28.73
Merged-chr5-63968958-3	chr5	63968379	63969379	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	18.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	167.04	157.13	149.84	168.68	128.29	148.7	182.72	155.64	108.04
Merged-chr2-152344015-3	chr2	152343505	152344505	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175093)	promoter-TSS (NM_175093)	55.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	41.19	35.02	11.1	21.59	21.93	14.47	26.4	30.51	17.49
Merged-chr2-101796632-4	chr2	101796162	101797162	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	CpG	1045.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	169.33	145.61	77.7	128.2	112.43	118.96	185.89	225.95	89.31
Merged-chr18-36465210-3	chr18	36464699	36465699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-10704.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	50.91	36.4	19.42	39.81	21.93	14.47	49.64	29.63	8.74
Merged-chr5-64834438-3	chr5	64833936	64834936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30913.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	92.67	60.82	75.85	76.24	40.59	52.25	64.43	53.06	53.71
Merged-chr17-44078830-3	chr17	44078336	44079336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329619)	promoter-TSS (NM_001329619)	34.0	NM_001329619	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	64.07	46.54	30.52	5.4	1.4	3.22	73.93	43.77	14.36
Merged-chr14-14863930-3	chr14	14863425	14864425	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 19 of 34)	intron (NM_001195229, intron 19 of 34)	43110.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	5.72	7.37	0.0	2.02	3.73	1.61	3.17	0.44	1.87
Merged-chr5-117417625-3	chr5	117417130	117418130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	3628.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	211.66	187.54	170.19	192.29	111.96	122.18	290.45	241.87	129.9
Merged-chr7-141172806-3	chr7	141172327	141173327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172100)	promoter-TSS (NM_001172100)	24.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	290.03	224.86	253.44	252.34	242.12	176.03	247.15	282.54	154.26
Merged-chr11-110731861-1	chr11	110731361	110732361	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-236172.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.0	8.29	0.0	10.12	7.93	7.23	13.73	3.54	6.87
Merged-chr1-106540409-1	chr1	106539909	106540909	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009741, exon 2 of 2)	3' UTR (NM_009741, exon 2 of 2)	6222.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	1.14	4.15	1.85	4.05	4.2	1.61	4.22	8.4	0.0
Merged-chr15-74920853-3	chr15	74920354	74921354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34197.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	77.23	76.49	72.15	37.11	22.39	46.62	128.85	137.51	63.7
Merged-chr1-181888977-3	chr1	181888485	181889485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46584.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	3.43	1.84	0.0	6.07	2.8	1.61	1.06	2.21	2.5
Merged-chr10-93081654-3	chr10	93081169	93082169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347060)	promoter-TSS (NM_001347060)	-73.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	4.0	1.84	1.85	14.17	3.27	1.61	3.17	2.21	8.12
Merged-chr9-82974341-3	chr9	82973841	82974841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1148.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	102.4	102.75	109.14	100.53	78.84	97.26	95.06	108.33	65.58
Merged-chr1-74238319-3	chr1	74237821	74238821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1804.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	95.53	100.91	81.4	81.64	48.52	61.09	103.51	96.83	85.56
Merged-chr15-100677939-3	chr15	100677420	100678420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	-8420.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	90.38	85.71	104.52	85.01	49.92	93.24	81.33	107.89	73.07
Merged-chr10-67536184-3	chr10	67535683	67536683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1686.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	53.77	28.57	36.07	53.98	33.59	24.92	48.58	38.91	25.61
Merged-chr18-38930574-3	chr18	38930061	38931061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-11862.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	9.15	8.75	7.4	18.89	7.0	4.82	7.39	3.98	1.25
Merged-chr19-5844490-1	chr19	5843990	5844990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	988.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	340.37	264.03	214.59	296.2	232.79	200.95	309.46	336.05	203.6
Merged-chr9-106257986-1	chr9	106257486	106258486	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-10032.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	1.14	1.38	0.0	2.02	3.27	1.61	5.28	2.21	5.0
Merged-chr3-100922202-3	chr3	100921692	100922692	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165953)	promoter-TSS (NM_001165953)	-301.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	150.45	156.67	119.32	154.51	146.95	102.08	162.65	167.14	81.81
Merged-chr10-42502040-3	chr10	42501523	42502523	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017472)	promoter-TSS (NM_017472)	-31.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	308.34	326.24	258.99	240.2	305.1	249.17	253.48	271.49	205.47
Merged-chr16-76218544-3	chr16	76218047	76219047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95934.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	85.81	55.29	47.17	76.92	43.85	61.09	92.94	60.58	57.46
Merged-chr5-32881385-2	chr5	32880891	32881891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360014, intron 7 of 40)	RMER6-int|LTR|ERVK	17670.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	32.61	48.38	26.82	45.88	34.52	43.4	4.22	1.33	3.75
Merged-chr15-57912992-3	chr15	57912512	57913512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 1 of 19)	intron (NM_001356310, intron 1 of 19)	813.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	307.19	290.75	129.49	134.94	81.64	20.9	219.69	343.12	136.15
Merged-chr18-4804228-3	chr18	4803730	4804730	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8256.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	82.95	64.51	40.7	95.81	101.23	91.63	39.08	35.37	38.1
Merged-chr5-120512063-3	chr5	120511573	120512573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	881.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	212.8	261.73	185.92	273.26	259.38	237.12	320.02	357.71	192.98
Merged-chr15-98985873-3	chr15	98985374	98986374	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045991)	promoter-TSS (NR_045991)	-91.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	390.71	324.85	236.79	396.73	283.64	250.78	351.71	375.4	217.34
Merged-chr7-16222089-3	chr7	16221579	16222579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285931)	promoter-TSS (NM_001285931)	-47.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	44.62	48.84	84.17	45.21	42.45	85.2	80.27	83.13	74.94
Merged-chr9-70391917-2	chr9	70391417	70392417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13836.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	50.34	69.12	19.42	66.12	37.79	70.73	5.28	1.77	1.25
Merged-chr10-62231295-3	chr10	62230807	62231807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197996)	promoter-TSS (NM_197996)	-89.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	43.48	50.69	58.27	52.63	50.38	57.07	60.2	45.54	30.6
Merged-chr7-25395943-6	chr7	25395535	25396535	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010719)	promoter-TSS (NM_010719)	-48.0	NM_010719	16890.0	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	147.59	118.42	116.54	103.91	89.57	112.53	120.41	110.54	84.31
Merged-chr2-32694227-3	chr2	32693712	32694712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010236)	promoter-TSS (NM_010236)	-37.0	NM_010236	14287.0	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	78.94	43.31	43.47	56.68	62.51	73.95	53.87	53.5	46.84
Merged-chr9-108560396-3	chr9	108559912	108560912	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011830)	promoter-TSS (NM_011830)	-89.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	142.44	137.31	145.22	118.75	95.17	100.47	106.67	138.4	86.18
Merged-chr11-59209286-3	chr11	59208794	59209794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024210, intron 4 of 6)	intron (NM_024210, intron 4 of 6)	933.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	70.36	51.15	88.8	70.85	32.66	71.54	60.2	47.75	83.69
Merged-chr9-119983835-3	chr9	119983318	119984318	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357560)	promoter-TSS (NM_001357560)	-39.0	NM_001357562	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	331.79	237.76	174.82	293.5	215.99	165.58	239.75	230.81	152.38
Merged-chrX-38565107-3	chrX	38564613	38565613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028288, intron 2 of 22)	CpG-15651	11083.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	144.16	135.93	123.94	124.15	141.82	94.85	134.14	140.17	79.32
Merged-chr2-85048482-1	chr2	85047982	85048982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1978.0	NM_001081260	228140.0	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	55.49	31.79	37.0	50.6	35.45	62.7	63.37	42.45	31.85
Merged-chr19-46039625-3	chr19	46039075	46040075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	46.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	35.47	23.5	33.3	30.36	28.46	39.39	31.69	40.24	38.72
Merged-chr3-8664743-3	chr3	8664257	8665257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010423, exon 5 of 5)	exon (NM_010423, exon 5 of 5)	2281.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	26.31	9.68	3.7	26.31	7.93	12.86	6.34	7.52	11.24
Merged-chr5-136567339-3	chr5	136566853	136567853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009986, exon 1 of 24)	5' UTR (NM_009986, exon 1 of 24)	137.0	NM_001291234	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	60.07	42.39	52.72	55.33	58.78	38.58	81.33	43.33	25.61
Merged-chr19-10278875-3	chr19	10278378	10279378	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	25999.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	143.01	107.36	66.6	149.11	118.96	142.27	105.62	74.28	49.96
Merged-chr17-35258328-3	chr17	35257742	35258742	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4852.0	NM_010380	14964.0	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	327.79	307.8	236.79	433.17	422.19	252.39	372.83	500.98	153.63
Merged-chr11-109473276-3	chr11	109472753	109473753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028710)	promoter-TSS (NM_028710)	-24.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	563.47	585.2	364.43	634.23	599.0	405.91	495.35	587.2	225.45
Merged-chr12-112840869-3	chr12	112840362	112841362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-11341.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	136.15	124.41	109.14	90.41	65.31	102.88	99.28	122.92	102.42
Merged-chr1-172563202-3	chr1	172562756	172563756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027644, exon 6 of 6)	non-coding (NR_027644, exon 6 of 6)	3350.0	NR_027644	240916.0	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	7.44	2.76	9.25	4.05	5.13	4.82	23.24	26.09	17.49
Merged-chr11-69881022-3	chr11	69880519	69881519	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-34.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	55.49	50.69	50.87	70.85	53.18	76.36	70.76	48.2	34.97
Merged-chrX-160116196-3	chrX	160115705	160116705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 21 of 28)	CT-rich|Low_complexity|Low_complexity	22225.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	84.66	82.94	72.15	80.97	59.71	73.95	85.55	109.22	58.71
Merged-chr1-16105822-3	chr1	16105330	16106330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133832)	promoter-TSS (NM_133832)	-52.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	70.36	80.64	75.85	90.41	81.17	117.35	64.43	44.22	44.34
Merged-chr1-171281243-3	chr1	171280739	171281739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008911)	promoter-TSS (NM_008911)	-53.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	148.73	177.4	105.44	135.62	122.69	104.49	118.29	141.94	81.81
Merged-chr4-150080493-3	chr4	150080002	150081002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7001.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	89.24	90.31	50.87	112.0	91.9	94.85	132.02	156.09	71.2
Merged-chr17-47737753-3	chr17	47737250	47738250	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-181.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	122.99	116.12	127.64	101.88	123.62	131.02	177.44	133.53	82.44
Merged-chr7-130646888-3	chr7	130646288	130647288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004468, intron 3 of 21)	intron (NM_001004468, intron 3 of 21)	-45768.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	363.25	365.86	199.79	353.55	303.23	189.69	238.7	204.72	105.55
Merged-chr9-59567334-3	chr9	59566812	59567812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11025.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	8.58	5.99	3.7	11.47	4.2	7.23	6.34	3.54	6.25
Merged-chr4-54338695-1	chr4	54338195	54339195	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	512650.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	3.43	5.53	0.0	5.4	6.06	4.82	1.06	1.33	3.75
Merged-chr17-36271353-4	chr17	36270875	36271875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178281)	promoter-TSS (NM_178281)	56.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	499.97	481.06	403.28	441.94	398.4	286.15	461.55	350.64	234.2
Merged-chr4-71489076-3	chr4	71488587	71489587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	711806.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	15.45	14.75	15.72	16.19	26.12	25.72	21.12	22.99	16.86
Merged-chr5-124019440-3	chr5	124018944	124019944	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	12816.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	123.56	89.39	74.92	105.93	48.05	68.32	101.39	113.19	55.58
Merged-chr16-92867465-3	chr16	92866965	92867965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-41391.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	311.77	241.91	112.84	292.83	225.79	174.42	235.53	310.4	116.79
Merged-chr10-8518458-1	chr10	8517958	8518958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_177387, exon 1 of 8)	5' UTR (NM_177387, exon 1 of 8)	367.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	118.42	103.68	88.8	97.83	94.7	77.16	92.94	80.47	76.82
Merged-chr18-78809018-3	chr18	78808522	78809522	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-212072.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	17.16	26.26	8.32	10.12	16.33	20.09	32.74	19.9	13.74
Merged-chr4-8667346-3	chr4	8666855	8667855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23051.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	32.61	27.65	20.35	35.76	6.53	19.29	15.84	15.92	14.99
Merged-chr14-70076854-3	chr14	70076371	70077371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289925)	promoter-TSS (NM_001289925)	-574.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	46.91	15.67	14.8	26.99	9.33	4.82	31.69	15.92	11.87
Merged-chr11-51809788-3	chr11	51809288	51810288	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46125.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	9.15	10.14	7.4	8.1	1.87	2.41	3.17	5.75	6.25
Merged-chr19-46338709-3	chr19	46338202	46339202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164295)	promoter-TSS (NM_001164295)	-42.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	201.36	164.04	150.77	168.68	132.02	128.61	185.89	217.55	77.44
Merged-chr11-120582139-3	chr11	120581645	120582645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	-525.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	284.88	228.09	206.26	311.04	227.19	233.1	247.15	254.25	164.25
Merged-chr11-75594696-3	chr11	75594188	75595188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	5543.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	56.06	51.15	72.15	41.83	31.72	60.28	44.36	56.6	28.1
Merged-chr10-75288759-3	chr10	75288263	75289263	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-28114.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	10.3	11.98	13.87	13.49	11.2	11.25	13.73	9.29	14.99
Merged-chr2-27318391-3	chr2	27317892	27318892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	intron (NR_133905, intron 3 of 29)	-71089.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	21.74	27.65	28.67	28.34	21.93	38.58	23.24	16.36	20.61
Merged-chr9-61349932-3	chr9	61349424	61350424	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-22442.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	25.74	21.66	6.47	26.31	6.53	13.66	15.84	6.63	7.49
Merged-chr2-155592744-3	chr2	155592264	155593264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008180)	promoter-TSS (NM_008180)	46.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	65.79	63.13	60.12	80.29	85.37	88.42	89.78	107.0	75.57
Merged-chr9-105642953-3	chr9	105642447	105643447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081309)	promoter-TSS (NM_001081309)	-48.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	123.56	163.58	129.49	89.06	127.36	103.69	105.62	93.3	54.33
Merged-chr1-43474733-3	chr1	43474222	43475222	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	28971.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	144.73	123.03	102.67	183.52	172.14	148.7	164.76	206.49	123.66
Merged-chr11-115139053-3	chr11	115138560	115139560	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	MLT1H|LTR|ERVL-MaLR	-5068.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	92.1	51.61	61.97	87.04	64.84	70.73	88.72	68.54	50.59
Merged-chr6-67158963-3	chr6	67158471	67159471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108008.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.0	1.84	1.85	8.1	4.67	0.0	4.22	5.31	8.74
Merged-chr8-33641895-3	chr8	33641402	33642402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178648)	promoter-TSS (NM_178648)	74.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	58.35	77.87	72.15	85.69	55.98	107.71	127.8	107.45	64.95
Merged-chr11-119954435-3	chr11	119953927	119954927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	11335.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	67.5	54.83	44.4	85.69	53.65	58.68	52.81	60.58	19.36
Merged-chr11-75458821-3	chr11	75458296	75459296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	286.6	248.82	218.29	281.36	174.47	210.59	259.82	295.37	158.63
Merged-chr3-127553185-5	chr3	127552653	127553653	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197997)	promoter-TSS (NM_197997)	196.0	NM_138593	28036.0	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	189.35	189.84	136.89	139.67	149.28	164.78	228.14	249.82	93.05
Merged-chrX-20687863-3	chrX	20687370	20688370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310456)	promoter-TSS (NM_001310456)	-84.0	NM_001310456	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	127.57	146.53	101.74	103.91	112.43	90.83	118.29	148.57	84.31
Merged-chr2-53191329-3	chr2	53190832	53191832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022989)	promoter-TSS (NM_022989)	-145.0	NM_018785	56194.0	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	287.17	240.99	243.26	247.62	236.99	233.9	266.16	248.94	163.63
Merged-chr10-122680567-3	chr10	122680067	122681067	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	1252.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	135.58	163.58	123.02	176.78	153.48	106.1	184.83	191.9	76.19
Merged-chr3-87521372-3	chr3	87520873	87521873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4205.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	196.79	159.43	78.62	186.22	133.42	125.39	83.44	69.42	60.58
Merged-chr11-11730299-3	chr11	11729797	11730797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	40120.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	30.89	25.34	40.7	28.34	20.99	28.13	28.52	15.03	28.73
Merged-chr13-101664157-3	chr13	101663649	101664649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28481.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	31.46	19.35	13.87	29.01	13.06	10.45	28.52	11.94	6.25
Merged-chr5-30907816-3	chr5	30907292	30908292	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024460)	promoter-TSS (NM_024460)	-4.0	NM_024460	67695.0	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	140.73	124.41	111.92	147.76	147.42	142.27	138.36	152.11	91.81
Merged-chr4-126103300-3	chr4	126102798	126103798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145827)	promoter-TSS (NM_001145827)	-659.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	253.42	261.73	226.61	244.92	284.57	243.55	198.56	270.61	134.9
Merged-chr7-25249467-3	chr7	25248992	25249992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	1266.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	152.17	124.41	158.17	123.47	87.7	118.16	138.36	125.13	106.17
Merged-chr18-60804950-3	chr18	60804478	60805478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 1 of 8)	intron (NM_001042605, intron 1 of 8)	1129.0	NM_010545	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	256.28	312.87	142.44	153.84	111.03	135.84	348.54	481.52	161.13
Merged-chr4-139228080-3	chr4	139227566	139228566	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	33955.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	106.4	102.75	91.57	103.91	75.57	69.93	98.23	112.75	59.95
Merged-chr17-35841443-3	chr17	35840909	35841909	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010833)	promoter-TSS (NM_001010833)	-89.0	NM_001010833	240087.0	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	102.97	79.72	58.27	92.44	55.51	73.14	72.88	85.78	71.2
Merged-chr15-102406739-3	chr15	102406218	102407218	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013672, intron 1 of 5)	CpG-5406	402.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	274.01	110.59	135.04	217.26	71.38	118.16	184.83	74.28	74.94
Merged-chr10-24635640-3	chr10	24635134	24636134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	40192.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	258.57	222.56	109.14	269.89	251.91	176.03	215.46	251.59	102.42
Merged-chr7-46831451-3	chr7	46830959	46831959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14345.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	236.26	229.47	182.22	261.79	269.18	209.79	257.71	307.75	143.02
Merged-chr17-50415500-3	chr17	50415007	50416007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16E1|LTR|ERVL	-94040.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	115.55	100.45	55.5	92.44	88.17	113.33	141.53	122.04	80.56
Merged-chrX-169123325-3	chrX	169122832	169123832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	10454.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	109.83	102.29	27.75	106.61	80.71	57.07	74.99	79.15	37.47
Merged-chr9-107635487-3	chr9	107634991	107635991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008138)	promoter-TSS (NM_008138)	-149.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	75.51	79.72	84.17	75.57	51.32	86.81	88.72	79.59	64.95
Merged-chr11-20468838-3	chr11	20468321	20469321	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-74432.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	25.17	35.94	38.85	29.01	17.73	58.68	54.92	34.49	34.97
Merged-chr18-35752295-3	chr18	35751766	35752766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11712.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	76.66	77.41	43.47	86.36	65.31	34.56	59.15	64.11	24.36
Merged-chr4-145231928-3	chr4	145231416	145232416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	14954.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	42.33	50.23	56.42	47.23	29.86	86.01	45.42	42.01	36.22
Merged-chr10-88332556-3	chr10	88332043	88333043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	24532.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	60.07	58.06	46.25	67.47	53.18	64.3	79.21	110.1	50.59
Merged-chr2-166021264-3	chr2	166020752	166021752	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	28615.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	78.94	70.04	73.07	66.12	56.45	72.34	58.09	60.58	43.72
Merged-chr13-36117522-3	chr13	36117030	36118030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	-113.0	NM_024274	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	71.51	94.0	71.22	92.44	104.5	86.81	122.52	81.36	42.47
Merged-chr9-35176026-3	chr9	35175531	35176531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027030)	promoter-TSS (NM_027030)	-44.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	106.4	124.87	106.37	134.27	115.23	111.73	97.17	98.16	62.45
Merged-chr19-29393558-3	chr19	29393057	29394057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17362.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	64.64	58.06	73.07	80.97	52.25	44.21	96.11	86.22	38.1
Merged-chr11-20249513-3	chr11	20249015	20250015	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172260)	promoter-TSS (NM_172260)	-91.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	94.96	90.77	108.22	97.83	74.64	84.4	94.0	60.58	58.08
Merged-chr5-135008972-3	chr5	135008449	135009449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190437)	promoter-TSS (NM_001190437)	-203.0	NM_001190437	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	240.26	275.09	181.29	209.16	220.66	174.42	186.94	263.97	133.65
Merged-chr6-91617401-3	chr6	91616903	91617903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-66664.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	20.02	18.43	20.35	32.39	20.53	50.64	32.74	24.76	22.48
Merged-chr5-43081966-2	chr5	43081466	43082466	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151497.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.0	4.15	3.7	10.8	4.2	3.22	8.45	8.4	7.49
Merged-chr1-20820379-3	chr1	20819885	20820885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-73.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	20.59	37.32	29.6	26.31	36.39	32.96	47.53	38.47	28.1
Merged-chr9-103365945-3	chr9	103365447	103366447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134427)	promoter-TSS (NM_001134427)	-167.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	143.01	111.05	102.67	145.74	92.84	92.44	148.92	115.85	85.56
Merged-chr6-83831873-3	chr6	83831360	83832360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146169)	promoter-TSS (NM_146169)	-119.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	36.61	28.11	9.25	36.43	28.46	37.78	41.19	34.93	26.85
Merged-chr7-110616025-3	chr7	110615534	110616534	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1114.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	162.46	141.0	105.44	136.97	91.9	102.08	107.73	162.28	101.8
Merged-chr15-103340173-3	chr15	103339634	103340634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013866)	promoter-TSS (NM_013866)	-48.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	39.47	26.73	25.9	18.89	24.26	30.54	32.74	23.88	18.74
Merged-chr16-90044262-3	chr16	90043764	90044764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69565.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	102.4	100.91	44.4	94.46	115.23	69.13	80.27	106.12	30.6
Merged-chr8-64726538-3	chr8	64726030	64727030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025436, intron 2 of 5)	intron (NM_025436, intron 2 of 5)	7048.0	NM_025436	66234.0	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	15.45	16.59	14.8	26.31	9.8	21.7	12.67	15.03	9.99
Merged-chr1-156025289-3	chr1	156024782	156025782	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	9535.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	70.93	65.43	58.27	95.81	78.84	59.48	66.54	63.67	41.84
Merged-chr19-41933393-3	chr19	41932887	41933887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164561)	promoter-TSS (NM_001164561)	-58.0	NM_001360679	74168.0	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	42.33	41.93	47.17	45.21	49.45	62.7	68.65	57.92	39.35
Merged-chr9-40329280-1	chr9	40328780	40329780	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 2 of 18)	intron (NR_151734, intron 2 of 18)	-4192.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	21.74	13.36	12.95	24.29	13.53	13.66	7.39	6.19	11.87
Merged-chr5-92675381-3	chr5	92674906	92675906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177230)	promoter-TSS (NM_177230)	-135.0	NM_001360019	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	20.59	11.52	7.4	26.99	2.8	12.06	10.56	10.61	8.74
Merged-chr15-99341251-2	chr15	99340743	99341743	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	MTD|LTR|ERVL-MaLR	29239.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	4.0	3.69	1.85	17.54	11.2	12.86	19.01	9.29	8.74
Merged-chrX-53670452-3	chrX	53669952	53670952	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018063)	promoter-TSS (NM_001018063)	-44.0	NM_001018063	553127.0	Mm.328602	NM_001018063	ENSMUSG00000067924	Rtl8b	Cxx1b|Mart8c	retrotransposon Gag like 8B	protein-coding	8.58	9.22	4.62	7.42	5.13	5.63	4.22	8.84	0.0
Merged-chr7-113369885-3	chr7	113369375	113370375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133700)	promoter-TSS (NM_133700)	-536.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	35.47	37.32	37.0	45.88	39.19	46.62	58.09	50.85	30.6
Merged-chr1-16161673-3	chr1	16161248	16162248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	55866.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	33.18	30.87	38.85	48.58	36.85	38.58	92.94	78.71	37.47
Merged-chr10-30618415-3	chr10	30617917	30618917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	-51.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	427.9	461.71	312.63	399.43	426.39	320.71	406.63	465.6	241.69
Merged-chr15-89196573-3	chr15	89196061	89197061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027081)	promoter-TSS (NM_027081)	-87.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	137.29	108.28	112.84	100.53	86.3	118.16	96.11	92.86	93.05
Merged-chr9-116178352-3	chr9	116177841	116178841	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2978.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	230.54	175.56	95.27	207.81	173.54	81.99	149.98	163.6	75.57
Merged-chr9-21525351-3	chr9	21524857	21525857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_206536)	promoter-TSS (NM_206536)	-820.0	NM_001198794	382062.0	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	114.41	142.84	132.27	132.24	112.43	158.35	175.33	195.0	105.55
Merged-chr6-87042747-3	chr6	87042262	87043262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013528)	promoter-TSS (NM_013528)	-84.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	225.96	205.97	152.62	224.01	187.54	160.76	168.99	156.53	83.69
Merged-chr5-138619742-3	chr5	138619264	138620264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044747)	promoter-TSS (NM_001044747)	-21.0	NM_001044747	24135.0	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	114.98	121.19	101.74	99.18	90.5	124.59	124.63	103.02	64.33
Merged-chr4-9122824-3	chr4	9122313	9123313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-146480.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	29.17	6.45	14.8	18.89	16.79	24.92	33.8	12.82	21.23
Merged-chr5-113999599-3	chr5	113999106	114000106	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4129.0	NM_010018	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	25.17	20.27	8.32	23.62	28.46	30.54	23.24	25.2	26.23
Merged-chr7-45128943-3	chr7	45128468	45129468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-223.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	143.01	112.43	123.94	137.64	90.97	127.0	129.91	131.77	79.32
Merged-chr4-62519983-3	chr4	62519463	62520463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008525)	promoter-TSS (NM_008525)	-54.0	NM_001276446	17025.0	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	134.43	121.65	98.05	151.81	120.36	182.46	59.15	47.31	19.98
Merged-chr17-33916006-3	chr17	33915490	33916490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020625)	promoter-TSS (NM_020625)	-186.0	NM_020625	81630.0	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	58.92	28.57	54.57	37.11	16.33	40.19	51.75	36.7	25.61
Merged-chr9-70328468-3	chr9	70327980	70328980	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 9 of 27)	intron (NM_181072, intron 9 of 27)	77273.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	52.06	35.94	16.65	74.89	46.65	105.3	70.76	57.92	38.1
Merged-chr14-9390338-3	chr14	9389846	9390846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-493749.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	37.18	24.88	16.65	53.3	26.12	36.97	44.36	25.2	18.11
Merged-chr3-81983767-3	chr3	81983259	81984259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8031.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	55.49	88.01	40.7	128.87	142.29	127.8	116.18	111.87	76.19
Merged-chr6-86488020-3	chr6	86487460	86488460	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040292, exon 1 of 2)	non-coding (NR_040292, exon 1 of 2)	267.0	NR_040293	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	162.46	186.62	114.69	139.67	154.41	184.87	177.44	217.99	124.91
Merged-chr1-172528875-3	chr1	172528370	172529370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 2 of 11)	intron (NM_027972, intron 2 of 11)	7740.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.15	4.61	0.0	4.72	5.13	0.0	9.51	2.21	6.25
Merged-chr1-178677992-1	chr1	178677492	178678492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	148867.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	14.87	14.28	11.1	2.02	2.33	0.0	1.06	3.98	1.25
Merged-chr7-135602463-3	chr7	135601946	135602946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-3382.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	24.03	29.95	20.35	41.16	29.39	31.35	20.07	14.59	11.24
Merged-chr10-71362011-3	chr10	71361510	71362510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14247.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	26.89	28.11	19.42	59.38	79.77	73.95	63.37	43.33	38.1
Merged-chr6-113624047-3	chr6	113623547	113624547	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	26.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	65.21	43.77	45.32	69.5	52.25	78.77	72.88	71.19	36.22
Merged-chr7-135716590-3	chr7	135716089	135717089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081117)	promoter-TSS (NM_001081117)	-210.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	56.06	68.66	57.35	61.4	40.59	38.58	79.21	71.63	59.95
Merged-chr4-3683067-3	chr4	3682570	3683570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	4949.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	165.32	131.78	70.3	138.99	69.51	127.8	118.29	142.38	108.67
Merged-chr4-136886291-3	chr4	136885786	136886786	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-109.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	209.37	200.9	156.32	177.45	134.35	165.58	251.37	268.4	124.28
Merged-chr1-74227503-3	chr1	74226991	74227991	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9026.0	NM_001357387	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	100.68	94.46	89.72	103.23	100.3	99.67	123.57	118.5	81.19
Merged-chr10-117418123-3	chr10	117417621	117418621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29314.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	145.87	67.74	83.25	147.09	92.37	138.25	152.09	148.13	89.31
Merged-chr4-86672017-3	chr4	86671537	86672537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1978.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	189.92	158.05	110.07	217.93	178.67	136.64	148.92	131.77	79.94
Merged-chr5-102497438-3	chr5	102496937	102497937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	16046.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	13.73	7.83	9.25	12.82	7.0	8.84	25.35	17.24	9.99
Merged-chr18-56820003-3	chr18	56819493	56820493	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	105555.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	24.6	18.43	2.77	10.8	6.53	1.61	7.39	5.31	5.0
Merged-chr10-80702110-3	chr10	80701587	80702587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027829)	promoter-TSS (NM_027829)	-267.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	76.66	66.35	81.4	76.24	53.18	73.95	73.93	61.02	61.2
Merged-chr4-43965154-3	chr4	43964664	43965664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	7462.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	38.33	39.17	47.17	39.13	14.46	18.49	48.58	22.11	25.61
Merged-chr1-138175332-3	chr1	138174835	138175835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011210)	promoter-TSS (NM_011210)	-30.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	296.9	341.9	132.27	245.6	292.97	165.58	256.65	327.65	144.27
Merged-chr1-33903821-3	chr1	33903327	33904327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	3794.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	195.07	231.77	138.74	145.74	99.83	134.23	114.07	159.62	104.92
Merged-chr2-128360752-3	chr2	128360243	128361243	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	68608.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	25.74	35.02	35.15	44.53	29.86	69.13	41.19	32.28	46.22
Merged-chr13-64266304-2	chr13	64265789	64266789	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	intron (NR_045798, intron 1 of 2)	8699.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	4.58	2.3	0.0	21.59	17.73	12.06	10.56	12.38	6.87
Merged-chr12-33311324-3	chr12	33310849	33311849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	L1MB5|LINE|L1	8834.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	70.93	46.54	49.95	78.94	29.86	49.03	87.66	61.02	54.33
Merged-chr8-120109354-3	chr8	120108878	120109878	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4774.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	139.58	158.97	129.49	157.21	118.96	162.37	197.51	214.01	106.79
Merged-chr5-102070663-3	chr5	102070163	102071163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172882)	promoter-TSS (NM_172882)	-742.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	322.64	380.15	293.21	330.61	292.97	307.05	302.07	384.69	212.96
Merged-chr9-119925476-3	chr9	119924979	119925979	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028976)	TTS (NM_028976)	12079.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	20.59	27.19	17.57	45.88	29.39	32.15	34.85	22.99	18.11
Merged-chr12-111442554-3	chr12	111442058	111443058	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009396)	promoter-TSS (NM_009396)	-103.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	307.76	286.61	197.94	353.55	264.98	223.45	235.53	335.16	152.38
Merged-chr8-41373928-3	chr8	41373436	41374436	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	761.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	154.45	177.86	136.89	153.84	121.29	151.11	216.52	228.16	108.67
Merged-chr10-94505488-3	chr10	94504981	94505981	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-9376.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	289.46	279.7	160.94	284.06	215.99	190.5	210.18	244.08	94.93
Merged-chr3-100431893-3	chr3	100431400	100432400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	5495.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	21.17	20.27	16.65	19.57	17.26	21.7	34.85	31.84	7.49
Merged-chr10-99198095-3	chr10	99197608	99198608	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027740)	TTS (NM_027740)	-65123.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	45.76	29.49	11.1	50.6	24.26	18.49	17.96	36.26	10.62
Merged-chr5-135168842-3	chr5	135168336	135169336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009745, intron 1 of 5)	CpG	464.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	408.45	449.73	276.56	441.94	420.32	277.31	369.66	448.8	217.34
Merged-chr2-27028779-3	chr2	27028268	27029268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172659)	promoter-TSS (NM_172659)	-770.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	105.26	111.51	90.65	136.29	98.9	106.9	142.59	184.38	103.05
Merged-chr1-75236956-3	chr1	75236483	75237483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159883, intron 2 of 8)	intron (NM_001159883, intron 2 of 8)	281.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	142.44	143.76	82.32	168.0	187.07	161.56	143.64	138.4	83.69
Merged-chr13-84222294-3	chr13	84221791	84222791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138587)	promoter-TSS (NR_138587)	-5.0	NR_029418	72745.0	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	67.5	39.17	35.15	58.03	39.65	39.39	55.98	48.64	41.22
Merged-chr5-140389300-3	chr5	140388788	140389788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172277)	promoter-TSS (NM_172277)	20.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	119.56	90.77	107.29	128.2	128.29	105.3	121.46	125.13	73.69
Merged-chr5-96210090-3	chr5	96209603	96210603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053158)	promoter-TSS (NM_053158)	-12.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	75.51	71.88	63.82	87.04	87.24	83.59	104.56	97.72	63.08
Merged-chr13-32908430-3	chr13	32907917	32908917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-10277.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	34.32	50.69	31.45	29.01	29.86	32.96	58.09	63.23	41.84
Merged-chr2-117312637-3	chr2	117312121	117313121	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	30256.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	26.89	30.87	28.67	17.54	19.59	8.04	21.12	16.36	16.24
Merged-chr1-78895954-3	chr1	78895478	78896478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	MTC|LTR|ERVL-MaLR	79067.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	28.03	27.65	32.37	33.74	13.06	34.56	17.96	24.32	18.74
Merged-chr5-124377386-3	chr5	124376887	124377887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081203, intron 30 of 31)	intron (NM_001081203, intron 30 of 31)	-22759.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	27.46	37.32	37.92	22.94	20.53	28.94	34.85	23.88	17.49
Merged-chr7-30956833-3	chr7	30956367	30957367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011680)	promoter-TSS (NM_011680)	-64.0	NM_011680	22282.0	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	201.36	113.35	196.09	242.22	123.62	173.62	277.78	93.3	125.53
Merged-chr4-156202676-3	chr4	156202184	156203184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030671)	promoter-TSS (NR_030671)	-600.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	384.99	337.29	147.99	394.71	366.68	165.58	282.0	369.65	121.78
Merged-chr11-62221265-3	chr11	62220771	62221771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001281818, exon 15 of 15)	3' UTR (NM_001281818, exon 15 of 15)	-27713.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	16.02	14.28	22.2	10.12	7.0	21.7	22.18	9.29	7.49
Merged-chr12-84193971-3	chr12	84193481	84194481	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163502)	promoter-TSS (NM_001163502)	34.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	301.47	229.93	251.59	275.96	208.06	207.38	222.86	182.17	174.24
Merged-chr13-17976052-3	chr13	17975546	17976546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17305.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	112.69	123.95	77.7	95.14	106.83	73.14	123.57	140.17	92.43
Merged-chr6-128839655-3	chr6	128839165	128840165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13350.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	141.87	170.95	78.62	119.43	90.97	103.69	96.11	119.83	75.57
Merged-chrUn_JH584304-13679-1	chrUn_JH584304	13179	14179	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	46010.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	62.31	53.94	0.0
Merged-chr7-119794080-3	chr7	119793601	119794601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027698)	promoter-TSS (NM_027698)	-29.0	NM_028129	434234.0	Mm.38237	NM_028129	ENSMUSG00000030924	Rexo5	2610020H08Rik	RNA exonuclease 5	protein-coding	30.32	23.04	21.27	34.41	28.92	39.39	48.58	40.68	16.86
Merged-chr13-41607826-3	chr13	41607327	41608327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	1611.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	73.79	106.44	49.02	109.3	60.65	61.89	110.9	129.55	54.33
Merged-chr10-94605662-3	chr10	94605168	94606168	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19469.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	6.86	5.99	0.92	21.59	6.06	11.25	7.39	8.4	0.0
Merged-chr4-149989187-3	chr4	149988642	149989642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	14094.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	42.9	40.09	45.32	61.4	71.84	44.21	40.14	21.67	21.86
Merged-chr16-57391587-3	chr16	57391082	57392082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	LSU-rRNA_Hsa|rRNA|rRNA	38305.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	42.9	41.01	59.2	31.04	19.59	38.58	30.63	11.5	61.83
Merged-chr3-51708787-3	chr3	51708283	51709283	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	47604.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	168.18	158.05	149.84	133.59	138.55	113.33	147.87	166.7	72.45
Merged-chr11-98863584-3	chr11	98863089	98864089	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197940)	promoter-TSS (NM_197940)	-9.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	113.27	51.15	65.67	78.94	33.12	72.34	110.9	61.02	70.57
Merged-chr4-59419372-3	chr4	59418890	59419890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	19243.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	20.02	20.74	11.1	24.96	13.06	16.08	14.79	2.65	6.25
Merged-chr16-91464983-3	chr16	91464480	91465480	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_077219)	promoter-TSS (NR_077219)	-124.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	437.62	305.5	207.19	371.77	283.64	245.16	355.93	418.29	167.37
Merged-chr3-36495673-3	chr3	36495225	36496225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11084.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	42.9	38.25	9.25	50.6	27.06	20.9	40.14	29.18	9.99
Merged-chr13-12651014-3	chr13	12650524	12651524	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003568)	promoter-TSS (NR_003568)	-629.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	37.18	11.52	25.9	37.11	27.99	59.48	35.91	21.67	19.98
Merged-chr9-49055576-3	chr9	49055085	49056085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012039)	promoter-TSS (NM_012039)	4.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	47.48	54.37	31.45	68.82	66.24	37.78	36.97	39.8	24.36
Merged-chr16-23591872-3	chr16	23591305	23592305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18114.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	84.66	90.31	78.62	66.12	80.71	70.73	91.89	102.58	64.33
Merged-chr7-64392686-3	chr7	64392192	64393192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026483)	promoter-TSS (NM_026483)	70.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	113.27	104.14	77.7	170.7	150.68	111.73	151.03	129.55	63.08
Merged-chr3-85574031-3	chr3	85573536	85574536	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144896)	promoter-TSS (NM_144896)	-93.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	143.59	192.61	119.32	146.41	209.93	163.97	184.83	191.9	124.28
Merged-chr16-17722812-3	chr16	17722317	17723317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285886)	promoter-TSS (NM_001285886)	83.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	506.84	450.65	332.06	497.94	486.1	363.31	433.04	416.96	208.59
Merged-chr4-135981681-3	chr4	135981198	135982198	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5546.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	124.71	126.25	76.77	124.15	105.43	94.04	128.85	123.36	83.69
Merged-chr13-111796649-3	chr13	111796155	111797155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	12338.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	183.06	109.21	88.8	184.2	141.82	138.25	184.83	183.06	84.94
Merged-chr8-67494822-3	chr8	67494322	67495322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168577)	promoter-TSS (NM_001168577)	-53.0	NM_001168577	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	34.9	53.91	34.22	46.56	47.12	54.66	43.3	36.7	26.23
Merged-chr3-89210305-3	chr3	89209816	89210816	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013604, exon 5 of 8)	exon (NM_013604, exon 5 of 8)	4019.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	240.83	196.75	118.39	244.25	152.55	120.57	196.45	194.11	96.18
Merged-chr1-51478470-3	chr1	51477965	51478965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310549)	promoter-TSS (NM_001310549)	-66.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	200.79	229.47	140.59	222.66	245.85	180.05	228.14	276.8	128.03
Merged-chr17-31110446-3	chr17	31109932	31110932	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 11 of 14)	ORR1E|LTR|ERVL-MaLR	19179.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	25.74	17.05	30.52	33.74	15.39	32.15	19.01	16.36	21.23
Merged-chr1-131083734-1	chr1	131083234	131084234	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	14109.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	167.04	153.44	140.59	178.8	174.01	155.13	181.66	172.0	123.03
Merged-chr2-166481117-3	chr2	166480626	166481626	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33675.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	49.2	25.34	4.62	60.72	17.26	17.68	24.29	14.59	12.49
Merged-chr6-122565615-3	chr6	122565114	122566114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11805.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	34.32	33.64	34.22	44.53	17.73	32.15	47.53	33.6	36.85
Merged-chr14-55591667-3	chr14	55591157	55592157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011190)	promoter-TSS (NM_011190)	-85.0	NM_194346	268749.0	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	290.6	215.19	186.84	207.81	190.8	192.91	212.29	204.72	129.28
Merged-chr5-114691061-3	chr5	114690584	114691584	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019821)	promoter-TSS (NM_019821)	-149.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	141.3	111.51	184.99	95.81	94.23	139.86	124.63	104.79	109.92
Merged-chr13-49205631-3	chr13	49205143	49206143	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 2 of 5)	MIRb|SINE|MIR	10383.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	199.65	103.68	53.65	153.84	86.77	81.99	113.01	123.36	65.58
Merged-chr8-83104204-3	chr8	83103725	83104725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-61127.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	81.8	114.74	56.42	115.38	112.9	74.75	73.93	86.66	74.32
Merged-chr2-20969039-3	chr2	20968531	20969531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033225, exon 1 of 2)	non-coding (NR_033225, exon 1 of 2)	157.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	176.19	179.25	145.22	218.61	197.8	164.78	188.0	134.42	121.78
Merged-chr13-107810588-3	chr13	107810078	107811078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	79486.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	127.0	139.62	62.9	107.28	64.38	75.56	95.06	109.66	83.69
Merged-chrX-56454801-3	chrX	56454296	56455296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172779)	promoter-TSS (NM_172779)	-43.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	45.76	47.46	27.75	41.16	27.06	52.25	52.81	43.77	31.85
Merged-chr8-123949345-3	chr8	123948846	123949846	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172288)	promoter-TSS (NM_172288)	-81.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	137.86	177.4	168.34	104.58	141.82	147.09	141.53	141.94	119.28
Merged-chr1-36446444-4	chr1	36445917	36446917	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-1146.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	72.65	76.95	45.32	66.12	47.12	73.95	88.72	77.82	42.47
Merged-chr19-6870957-3	chr19	6870464	6871464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-12753.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	150.45	145.15	155.39	122.12	73.24	121.37	222.86	230.81	100.55
Merged-chr12-72085659-3	chr12	72085163	72086163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205067)	promoter-TSS (NM_001205067)	-176.0	NM_001205067	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	98.97	68.66	65.67	86.36	65.31	95.65	136.25	107.89	50.59
Merged-chr2-59129210-3	chr2	59128708	59129708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	L1MA6|LINE|L1	31475.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	104.11	93.54	29.6	149.79	128.29	74.75	115.12	133.98	58.71
Merged-chr18-6765077-3	chr18	6764592	6765592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-75.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	161.89	185.7	130.42	190.95	221.13	122.18	212.29	169.79	115.54
Merged-chr6-38533684-3	chr6	38533182	38534182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1179.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	226.53	282.46	171.12	191.62	183.8	173.62	188.0	299.35	138.02
Merged-chr1-167306640-3	chr1	167306124	167307124	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2046.0	NM_001039483	68944.0	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	5.15	10.6	1.85	8.77	4.67	11.25	14.79	6.19	13.12
Merged-chr13-5864555-5	chr13	5864055	5865055	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	3066.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	240.83	241.91	92.5	170.7	144.15	108.51	140.47	169.79	93.05
Merged-chr6-122635506-3	chr6	122634995	122635995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	9071.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	95.53	94.0	85.1	99.86	76.04	82.79	107.73	183.06	73.69
Merged-chr11-55023228-3	chr11	55022736	55023736	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10235.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	96.11	76.03	58.27	71.52	19.59	20.9	33.8	19.46	18.74
Merged-chr7-19149796-3	chr7	19149268	19150268	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026111)	promoter-TSS (NM_026111)	-70.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	41.19	60.36	51.8	32.39	36.85	42.6	36.97	64.56	24.98
Merged-chr1-153751876-3	chr1	153751377	153752377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011882, exon 2 of 9)	5' UTR (NM_011882, exon 2 of 9)	2451.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	377.56	425.76	227.54	336.68	337.29	263.64	279.89	395.74	166.12
Merged-chr11-85311219-3	chr11	85310721	85311721	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-33.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	131.0	139.16	151.69	122.8	146.48	167.99	137.3	149.89	111.17
Merged-chr13-95849913-1	chr13	95849413	95850413	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	42009.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.57	5.53	1.85	2.7	2.33	9.65	22.18	14.59	24.98
Merged-chr1-172148079-3	chr1	172147599	172148599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153555)	promoter-TSS (NM_153555)	84.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	238.55	307.34	188.69	281.36	319.09	242.74	262.99	294.04	179.24
Merged-chr2-75829144-3	chr2	75828643	75829643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3034.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	42.9	39.63	55.5	30.36	28.46	54.66	43.3	30.07	45.59
Merged-chr12-33156491-3	chr12	33155989	33156989	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	ID4_|SINE|ID	8803.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	87.52	77.87	80.47	77.59	60.65	81.99	107.73	86.66	76.82
Merged-chr2-164941224-3	chr2	164940719	164941719	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-7000.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	70.36	25.34	29.6	33.06	13.53	11.25	50.7	33.6	11.87
Merged-chr14-20830112-5	chr14	20829605	20830605	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6557.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	183.06	211.96	135.04	213.89	150.22	144.68	192.23	214.01	144.27
Merged-chr10-11281045-5	chr10	11280669	11281669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027968)	promoter-TSS (NM_027968)	-161.0	NM_027968	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	441.63	417.47	291.36	452.74	378.34	274.09	342.2	330.3	183.61
Merged-chr9-59755392-3	chr9	59754872	59755872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	4198.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	77.23	71.42	58.27	80.97	67.18	86.01	73.93	90.2	66.2
Merged-chr11-114675921-1	chr11	114675421	114676421	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	CpG	453.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	167.04	109.21	165.57	130.22	109.16	131.02	156.32	163.6	106.17
Merged-chr10-128369034-3	chr10	128368551	128369551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081040, exon 1 of 5)	5' UTR (NM_001081040, exon 1 of 5)	986.0	NM_001081040	210582.0	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	417.03	223.94	231.24	398.76	237.92	190.5	315.8	288.29	134.9
Merged-chr11-4186719-3	chr11	4186216	4187216	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134023)	promoter-TSS (NM_134023)	-117.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	266.0	198.14	157.24	255.04	240.25	151.92	205.96	221.97	76.19
Merged-chr2-163602873-3	chr2	163602367	163603367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131225, intron 1 of 3)	intron (NR_131225, intron 1 of 3)	553.0	NR_131225	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	223.1	158.05	129.49	249.65	207.6	200.95	205.96	145.92	71.2
Merged-chr12-91711856-3	chr12	91711371	91712371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	74565.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	124.14	137.77	98.97	160.58	151.15	151.92	132.02	167.58	100.55
Merged-chr12-85374991-3	chr12	85374404	85375404	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026775)	promoter-TSS (NM_026775)	-187.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	454.21	323.93	208.11	439.92	317.69	274.9	362.27	384.24	164.25
Merged-chr2-84592969-3	chr2	84592471	84593471	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56509.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	68.65	33.64	42.55	82.32	52.72	32.15	69.71	48.64	14.36
Merged-chr4-129033711-2	chr4	129033224	129034224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24547.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	341.52	287.99	190.54	292.15	197.8	173.62	240.81	295.81	123.66
Merged-chr17-71616125-3	chr17	71615600	71616600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-115.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	236.83	222.1	123.94	200.39	202.0	171.21	185.89	209.59	124.28
Merged-chr18-34651790-3	chr18	34651289	34652289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178347)	promoter-TSS (NM_178347)	-53.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	28.03	44.7	51.8	38.46	32.66	27.33	24.29	23.88	34.35
Merged-chr2-173452093-1	chr2	173451593	173452593	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-70499.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.86	1.38	1.85	2.7	6.53	0.0	6.34	2.21	8.74
Merged-chr10-125324685-3	chr10	125324192	125325192	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	MLT1B-int|LTR|ERVL-MaLR	4271.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	78.37	65.89	42.55	103.23	84.44	68.32	83.44	80.03	53.71
Merged-chrX-74115697-3	chrX	74115181	74116181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11785.0	NM_008106	14539.0	Mm.284825	NM_008106	ENSMUSG00000031394	Opn1mw	Gcp	opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	protein-coding	17.16	20.27	11.1	16.87	21.46	19.29	21.12	14.59	9.99
Merged-chrX-134116589-3	chrX	134116095	134117095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4741.0	NM_172203	237038.0	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	4.0	1.84	0.0	2.02	4.67	3.22	1.06	1.77	2.5
Merged-chr3-109255189-3	chr3	109254675	109255675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85508.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	134.43	127.64	97.12	143.71	87.24	87.61	122.52	130.88	74.94
Merged-chr10-121488849-3	chr10	121488348	121489348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12598.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	128.71	125.33	121.17	122.8	107.3	123.78	70.76	94.62	68.7
Merged-chr9-47734265-3	chr9	47733734	47734734	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	83974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	271.15	260.34	133.19	248.97	228.12	165.58	201.73	281.66	120.53
Merged-chr5-124095969-3	chr5	124095457	124096457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019875)	promoter-TSS (NM_019875)	-159.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	20.02	8.29	18.5	14.17	11.66	13.66	13.73	7.07	2.5
Merged-chr10-77970652-3	chr10	77970157	77971157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138301)	promoter-TSS (NM_138301)	-785.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	175.62	142.38	136.89	191.62	134.35	176.83	219.69	222.85	112.42
Merged-chr8-126747638-3	chr8	126747142	126748142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101378.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	62.93	47.92	43.47	83.66	33.12	32.15	45.42	38.03	17.49
Merged-chr16-16527406-3	chr16	16526901	16527901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301818)	promoter-TSS (NM_001301818)	10.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	267.15	306.42	149.84	234.13	261.24	163.17	268.27	303.33	114.91
Merged-chrX-47976758-3	chrX	47976271	47977271	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58082.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	31.46	20.74	3.7	21.59	28.46	51.44	14.79	11.05	7.49
Merged-chr14-61440074-3	chr14	61439575	61440575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008466)	promoter-TSS (NM_008466)	-128.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	200.22	141.46	141.52	183.52	124.09	123.78	200.68	109.22	73.07
Merged-chr7-28598276-3	chr7	28597776	28598776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027470)	promoter-TSS (NM_027470)	-92.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	28.03	25.8	14.8	39.13	22.86	13.66	30.63	14.59	12.49
Merged-chr2-124620676-3	chr2	124620205	124621205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	10409.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	102.4	109.67	60.12	144.39	121.76	91.63	88.72	116.29	49.34
Merged-chr18-60500114-3	chr18	60499593	60500593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	1890.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	53.77	51.15	35.15	72.87	67.18	86.01	11.62	18.57	12.49
Merged-chr8-119826185-3	chr8	119825686	119826686	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	14393.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	143.01	109.67	109.14	143.71	120.83	168.8	156.32	160.06	91.81
Merged-chr15-96631383-4	chr15	96630894	96631894	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	L1M2|LINE|L1	10568.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	102.97	91.24	49.95	62.07	37.79	53.05	54.92	57.04	32.48
Merged-chr4-130663265-3	chr4	130662784	130663784	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159604)	promoter-TSS (NM_001159604)	-37.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	118.42	90.77	85.1	95.81	84.44	73.95	111.96	62.79	51.21
Merged-chr11-8566674-3	chr11	8566179	8567179	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97856.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	176.19	139.16	123.94	122.8	93.77	114.14	116.18	127.34	84.31
Merged-chr17-71265836-2	chr17	71265341	71266341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	45170.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	311.77	311.03	184.07	309.02	239.79	194.52	19.01	15.92	12.49
Merged-chr5-35729304-3	chr5	35728798	35729798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-22.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	299.76	279.24	175.74	327.91	352.21	262.84	334.81	451.89	206.09
Merged-chr19-59071603-3	chr19	59071096	59072096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	4473.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	18.31	25.8	31.45	14.17	20.06	18.49	17.96	16.36	16.86
Merged-chr12-32820245-3	chr12	32819761	32820761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021524)	promoter-TSS (NM_021524)	-74.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	266.0	199.52	173.89	253.02	221.13	152.72	204.9	225.06	94.3
Merged-chr17-5206980-3	chr17	5206466	5207466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211801.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	50.34	32.72	38.85	68.15	45.72	72.34	42.25	23.43	18.74
Merged-chr10-21669081-3	chr10	21668579	21669579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21766.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	21.74	17.97	9.25	24.96	27.06	28.13	19.01	36.7	24.98
Merged-chr8-69902873-1	chr8	69902373	69903373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023312)	promoter-TSS (NM_023312)	-315.0	NM_023312	67184.0	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	324.35	340.06	226.61	283.38	302.76	292.58	335.87	368.33	206.72
Merged-chr9-85331730-3	chr9	85331230	85332230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4580.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	44.05	47.46	32.37	42.51	22.86	40.19	33.8	35.82	38.1
Merged-chr2-104742773-3	chr2	104742237	104743237	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144804)	promoter-TSS (NM_144804)	64.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	73.22	62.67	73.07	87.04	61.11	63.5	70.76	34.93	25.61
Merged-chr2-30690504-3	chr2	30690000	30691000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12489.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	73.22	55.29	24.97	93.79	73.71	53.85	31.69	29.63	28.1
Merged-chr8-13685832-3	chr8	13685348	13686348	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-8261.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	10.3	8.29	3.7	9.45	3.73	8.04	7.39	10.61	8.74
Merged-chr14-63117679-3	chr14	63117208	63118208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4754.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	71.51	104.14	42.55	105.93	71.38	72.34	100.34	91.97	54.33
Merged-chr14-121987477-3	chr14	121986992	121987992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-22299.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	52.63	47.92	34.22	66.12	39.19	57.07	41.19	48.64	50.59
Merged-chr9-31145708-3	chr9	31145225	31146225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-13926.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	12.01	8.75	10.17	14.17	4.67	6.43	3.17	1.77	5.0
Merged-chr13-64370393-3	chr13	64369914	64370914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009984, exon 1 of 8)	5' UTR (NM_009984, exon 1 of 8)	106.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	234.54	209.2	171.12	197.69	163.74	173.62	291.51	302.0	162.38
Merged-chr9-35570195-3	chr9	35569647	35570647	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029762)	promoter-TSS (NM_029762)	-78.0	NM_029762	76832.0	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	HYLS1, centriolar and ciliogenesis associated	protein-coding	38.9	43.31	35.15	33.06	42.92	68.32	50.7	32.72	38.1
Merged-chr10-81060302-3	chr10	81059803	81060803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024499)	promoter-TSS (NM_024499)	-32.0	NM_024499	52551.0	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	154.45	165.88	74.92	182.17	121.76	81.99	148.92	160.51	64.95
Merged-chr12-87388475-3	chr12	87387990	87388990	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011479)	promoter-TSS (NM_011479)	-135.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	122.99	136.39	135.04	114.7	93.77	119.76	147.87	131.77	74.32
Merged-chr6-72958405-3	chr6	72957893	72958893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039392)	promoter-TSS (NM_001039392)	90.0	NM_025284	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	10.87	10.14	11.1	25.64	12.13	16.08	21.12	7.07	6.25
Merged-chr17-65782857-3	chr17	65782338	65783338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	-517.0	NR_152099	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	181.34	109.67	98.97	206.46	114.29	138.25	158.43	95.07	76.19
Merged-chr17-34959341-3	chr17	34958771	34959771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-33.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	108.12	98.61	80.47	122.8	87.24	81.99	95.06	107.45	53.71
Merged-chr15-81858267-3	chr15	81857747	81858747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	79.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	256.85	201.36	161.87	267.86	156.28	211.4	234.47	275.91	174.87
Merged-chr1-59482040-3	chr1	59481541	59482541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008057)	promoter-TSS (NM_008057)	-106.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	94.96	84.78	66.6	66.8	69.98	90.83	78.16	94.62	61.2
Merged-chr2-157133903-3	chr2	157133393	157134393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	BC1_Mm|scRNA|scRNA	1329.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	45.19	68.66	50.87	37.11	34.52	73.14	87.66	122.48	56.21
Merged-chr3-155093367-3	chr3	155092869	155093869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028938)	promoter-TSS (NM_028938)	9.0	NM_029330	75540.0	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	69.79	73.73	69.37	68.15	78.84	59.48	88.72	80.92	42.47
Merged-chr4-6357577-3	chr4	6357069	6358069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8111.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	227.11	201.36	115.62	250.99	247.72	190.5	202.79	233.02	98.05
Merged-chr8-122912249-3	chr8	122911744	122912744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	63870.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	53.77	31.79	18.5	90.41	47.58	35.37	104.56	81.36	51.21
Merged-chr4-33247776-3	chr4	33247252	33248252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033225, intron 1 of 1)	CpG	1035.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	372.41	319.78	272.86	331.29	261.24	262.84	343.26	329.41	148.01
Merged-chr5-17857476-3	chr5	17856987	17857987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-7695.0	NM_001159556	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	50.34	45.16	21.27	53.3	48.52	40.99	28.52	35.37	28.73
Merged-chr4-63815858-3	chr4	63815363	63816363	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	45421.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	44.05	54.83	37.0	38.46	56.45	46.62	54.92	61.46	32.48
Merged-chr9-119341152-3	chr9	119340645	119341645	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-149.0	NM_130864	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	129.86	113.35	86.95	73.54	73.24	114.14	122.52	126.9	98.05
Merged-chr13-113446358-3	chr13	113445875	113446875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045501)	TTS (NR_045501)	56469.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	64.64	58.98	56.42	96.48	57.38	78.77	62.31	64.56	47.46
Merged-chr17-6008804-3	chr17	6008298	6009298	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 7 of 24)	intron (NM_001357667, intron 7 of 24)	1218.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	37.18	32.72	3.7	44.53	31.72	14.47	27.46	15.48	8.74
Merged-chr17-10764503-3	chr17	10764010	10765010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75681.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	22.88	18.89	29.6	21.59	17.73	3.22	23.24	10.61	13.74
Merged-chr3-59260951-3	chr3	59260464	59261464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 32 of 43)	intron (NM_177855, intron 32 of 43)	2021.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	90.96	88.93	39.77	49.25	63.91	37.78	65.48	79.15	58.71
Merged-chr14-44986489-3	chr14	44986018	44987018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1593.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	80.66	86.63	41.62	70.17	50.85	56.27	54.92	52.18	31.23
Merged-chr8-84200995-3	chr8	84200464	84201464	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7554.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	300.9	238.69	217.36	361.65	304.63	293.38	314.74	283.43	143.02
Merged-chr17-78265382-3	chr17	78264891	78265891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	65143.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	32.04	16.13	7.4	22.27	10.26	4.02	6.34	8.84	5.62
Merged-chr13-73604000-3	chr13	73603507	73604507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146047)	promoter-TSS (NM_146047)	5.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	227.11	218.41	127.64	232.1	227.19	169.6	276.72	201.19	95.55
Merged-chr8-41395483-2	chr8	41394984	41395984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-20787.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	18.31	17.05	14.8	16.19	5.6	10.45	6.34	5.75	3.75
Merged-chr10-93944361-1	chr10	93943861	93944861	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19502.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	2.86	1.84	0.92	0.0	0.47	0.0	58.09	48.2	22.48
Merged-chr6-113333256-3	chr6	113332770	113333770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133926)	TTS (NM_133926)	6294.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	112.12	114.27	86.02	102.56	70.44	104.49	115.12	151.22	89.93
Merged-chr13-54216015-1	chr13	54215515	54216515	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	23882.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	2.29	3.23	1.85	2.7	0.93	1.61	17.96	12.38	23.73
Merged-chr8-111027771-3	chr8	111027290	111028290	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190800)	promoter-TSS (NM_001190800)	-20.0	NM_001190800	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	139.58	121.65	74.0	95.81	105.9	87.61	111.96	133.98	75.57
Merged-chr9-121719040-3	chr9	121718543	121719543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010918)	promoter-TSS (NM_010918)	-138.0	NM_010918	18087.0	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	532.58	480.14	331.13	495.92	457.18	322.32	368.61	487.71	226.7
Merged-chr10-69352952-3	chr10	69352446	69353446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007659)	promoter-TSS (NM_007659)	-34.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	9.72	15.67	9.25	16.87	7.0	12.86	17.96	12.38	11.24
Merged-chr13-55429486-3	chr13	55428978	55429978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2674.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	147.59	162.2	100.82	127.52	98.43	143.07	192.23	283.87	85.56
Merged-chr2-164879397-2	chr2	164878899	164879899	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	31.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	372.98	274.63	249.74	327.24	240.72	206.57	247.15	240.1	176.12
Merged-chr17-34105026-3	chr17	34104546	34105546	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-9737.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	57.78	40.55	43.47	28.34	16.33	18.49	45.42	49.52	52.46
Merged-chr15-25354931-3	chr15	25354439	25355439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58825.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	65.79	42.39	35.15	124.82	61.58	63.5	68.65	85.34	29.35
Merged-chr6-47790923-3	chr6	47790432	47791432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31F_MM|LTR|ERVK	12720.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	24.03	33.64	21.27	31.71	15.86	24.11	45.42	59.69	58.08
Merged-chr3-105803815-3	chr3	105803336	105804336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2455.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	161.32	105.98	46.25	107.95	66.71	48.23	88.72	98.6	57.46
Merged-chr11-109472284-3	chr11	109471789	109472789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	CpG	940.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	245.41	260.8	154.47	237.5	251.45	172.81	297.84	308.63	137.4
Merged-chr17-5785423-3	chr17	5784887	5785887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13270.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	29.75	29.95	27.75	34.41	22.39	17.68	25.35	46.43	14.36
Merged-chr7-91716914-3	chr7	91716413	91717413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-345481.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	11.44	10.14	6.47	14.84	7.46	8.84	11.62	11.05	6.25
Merged-chr2-153147427-3	chr2	153146903	153147903	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13898.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	100.68	74.19	86.95	92.44	65.78	69.13	61.26	57.48	38.72
Merged-chr5-137883130-3	chr5	137882637	137883637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11379.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	52.63	52.53	47.17	70.17	54.11	49.83	63.37	70.75	59.33
Merged-chr19-21127579-3	chr19	21127085	21128085	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22875.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	157.89	176.48	86.95	186.9	170.28	158.35	194.34	234.79	143.02
Merged-chr17-55892028-3	chr17	55891517	55892517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145490)	promoter-TSS (NM_145490)	-76.0	NM_001360136	224893.0	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	95.53	76.49	86.95	109.98	89.57	85.2	79.21	82.69	56.83
Merged-chr3-60469490-3	chr3	60469000	60470000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3330.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	33.75	21.2	22.2	45.88	41.99	53.85	45.42	63.23	31.23
Merged-chr1-52500028-3	chr1	52499543	52500543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008667, intron 1 of 7)	CpG	405.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	172.19	112.43	107.29	149.79	55.05	88.42	144.7	53.5	69.32
Merged-chr13-76055413-3	chr13	76054908	76055908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175495, exon 1 of 1)	3' UTR (NM_175495, exon 1 of 1)	1588.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	8.01	4.61	9.25	5.4	4.2	1.61	7.39	5.75	5.0
Merged-chr11-114879847-3	chr11	114879336	114880336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10205.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	120.13	92.16	108.22	99.18	48.52	69.93	79.21	76.94	60.58
Merged-chr14-115040881-3	chr14	115040371	115041371	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2800.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	16.59	7.83	7.4	16.19	3.73	5.63	26.4	6.63	5.0
Merged-chr14-70100083-3	chr14	70099587	70100587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360404)	promoter-TSS (NM_001360404)	-6.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	141.3	147.91	164.64	89.06	135.29	189.69	164.76	163.6	141.77
Merged-chr2-167072048-4	chr2	167071545	167072545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6752.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	9.15	11.06	3.7	26.31	16.33	24.92	22.18	14.59	14.36
Merged-chr17-73067132-3	chr17	73066613	73067613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40872.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	169.33	142.38	72.15	130.9	102.17	82.79	145.75	150.78	75.57
Merged-chr9-94362773-3	chr9	94362278	94363278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175303.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	78.94	87.55	53.65	58.7	42.92	45.82	67.6	65.0	63.08
Merged-chr15-38662446-1	chr15	38661946	38662946	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	542.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	263.72	266.33	150.77	266.51	325.62	186.48	271.44	285.64	98.68
Merged-chr4-118180115-3	chr4	118179598	118180598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172382)	promoter-TSS (NM_172382)	-55.0	NM_001161823	230674.0	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	92.67	123.49	86.02	64.77	79.77	93.24	120.41	125.58	64.95
Merged-chr17-24426629-3	chr17	24426127	24427127	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-56.0	NM_010023	13177.0	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	110.98	100.45	113.77	97.16	81.17	96.45	54.92	57.48	50.59
Merged-chr10-71285296-3	chr10	71284794	71285794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145420)	promoter-TSS (NM_145420)	-32.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	12.01	5.53	11.1	23.62	16.79	32.15	11.62	5.75	11.87
Merged-chr8-122432545-3	chr8	122432052	122433052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	388.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	600.66	535.89	315.41	515.48	408.19	398.68	518.59	586.76	267.92
Merged-chr3-21991897-3	chr3	21991401	21992401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	76.08	64.97	85.1	71.52	69.51	69.13	96.11	85.78	52.46
Merged-chr18-20809867-3	chr18	20809358	20810358	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-63454.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	102.97	81.56	53.65	123.47	90.5	113.33	115.12	89.76	51.21
Merged-chr9-124423224-3	chr9	124422718	124423718	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027950)	promoter-TSS (NR_027950)	-33.0	NR_027950	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	498.83	356.19	265.46	408.88	297.17	271.68	372.83	369.21	192.35
Merged-chr1-182283451-3	chr1	182282968	182283968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007853)	promoter-TSS (NM_007853)	-667.0	NM_007853	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	58.35	70.96	63.82	55.33	57.38	57.07	52.81	49.96	51.21
Merged-chr19-46504321-3	chr19	46503837	46504837	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	2689.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	184.2	155.28	152.62	172.73	117.09	182.46	191.17	154.76	118.04
Merged-chr5-66075250-4	chr5	66074771	66075771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	B3|SINE|B2	22908.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	84.66	96.3	76.77	129.55	76.97	87.61	132.02	129.11	104.92
Merged-chr9-21510202-3	chr9	21509758	21510758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-24.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	110.41	76.49	101.74	89.74	68.11	81.99	116.18	87.55	74.94
Merged-chr5-96912297-4	chr5	96911777	96912777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8995.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	275.16	219.33	184.07	247.62	209.0	208.18	212.29	188.81	128.65
Merged-chr4-145270323-3	chr4	145269797	145270797	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 12 of 12)	intron (NM_009401, intron 12 of 12)	-23427.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	57.78	50.23	53.65	64.77	56.91	53.05	59.15	59.25	47.46
Merged-chr13-51996433-3	chr13	51995931	51996931	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-100310.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	10.87	3.23	9.25	17.54	8.4	12.86	10.56	6.19	1.25
Merged-chr19-5877822-3	chr19	5877341	5878341	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361973)	promoter-TSS (NM_001361973)	19.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	169.33	160.81	164.64	145.74	115.69	136.64	157.37	181.73	120.53
Merged-chr13-20185299-3	chr13	20184789	20185789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94782.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	99.54	129.94	83.25	105.26	95.63	110.12	100.34	134.42	83.06
Merged-chr18-20696947-1	chr18	20696447	20697447	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-31687.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	147.02	180.63	125.79	163.96	144.15	155.13	164.76	195.44	79.94
Merged-chr14-52019837-3	chr14	52019291	52020291	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	-78.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	442.77	361.72	280.26	403.48	285.97	257.21	420.36	350.2	198.6
Merged-chr11-69767703-3	chr11	69767191	69768191	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1779.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	280.31	287.99	200.71	319.14	264.51	235.51	339.04	321.46	171.12
Merged-chr11-98918410-3	chr11	98917908	98918908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	10257.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	135.58	115.66	102.67	102.56	76.04	84.4	123.57	140.17	86.18
Merged-chr5-90655050-3	chr5	90654549	90655549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14522.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	48.05	29.49	9.25	49.93	17.26	30.54	13.73	15.03	13.12
Merged-chr11-35297590-3	chr11	35297101	35298101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	176145.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	1.72	3.23	1.85	14.17	3.27	8.04	14.79	7.07	7.49
Merged-chr11-53980389-3	chr11	53979809	53980809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019723)	promoter-TSS (NM_019723)	24.0	NM_001362202	56517.0	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	40.62	27.65	18.5	29.01	21.93	48.23	22.18	27.41	29.98
Merged-chr13-29986204-3	chr13	29985697	29986697	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010093)	promoter-TSS (NM_010093)	-134.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	73.79	85.71	61.97	89.74	74.64	61.89	80.27	92.41	42.47
Merged-chr5-125180125-3	chr5	125179621	125180621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253904)	promoter-TSS (NM_001253904)	-907.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	124.14	114.74	130.42	122.12	98.9	135.04	163.71	198.09	154.88
Merged-chr4-133599894-3	chr4	133599402	133600402	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018754)	TTS (NM_018754)	2266.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	25.74	13.36	32.37	29.69	26.12	35.37	13.73	11.5	13.74
Merged-chr7-80831688-3	chr7	80831188	80832188	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-28357.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	154.45	161.74	123.94	211.19	129.22	164.78	153.15	228.6	124.28
Merged-chr4-95303510-3	chr4	95303002	95304002	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251280.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	30.32	27.65	25.9	16.87	27.52	20.9	46.47	28.74	45.59
Merged-chr12-99641528-3	chr12	99641027	99642027	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13553.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	29.75	23.5	24.05	31.04	23.79	26.53	53.87	50.41	43.09
Merged-chr2-132600272-3	chr2	132599769	132600769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	2073.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	152.74	139.62	75.85	145.74	138.09	84.4	70.76	85.78	56.21
Merged-chr10-94059809-3	chr10	94059302	94060302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	23801.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	22.88	21.2	11.1	35.09	20.53	24.92	78.16	82.24	39.97
Merged-chr4-46489236-3	chr4	46488707	46489707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053179)	promoter-TSS (NM_053179)	-122.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	42.9	48.84	64.75	56.68	48.52	55.46	52.81	40.24	48.71
Merged-chr11-75454647-3	chr11	75454132	75455132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	85.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	183.06	159.43	114.69	186.22	180.07	165.58	186.94	136.19	90.56
Merged-chr18-6531358-1	chr18	6530858	6531858	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-15250.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	4.58	2.76	1.85	18.22	12.6	7.23	3.17	2.65	2.5
Merged-chr5-77015975-3	chr5	77015492	77016492	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027970)	promoter-TSS (NM_027970)	-31.0	NM_027970	71868.0	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	7.44	4.15	1.85	9.45	4.67	9.65	10.56	3.54	4.37
Merged-chr8-26977655-2	chr8	26977157	26978157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101502, intron 1 of 1)	CpG	321.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	165.32	166.34	151.69	153.84	143.68	185.68	188.0	141.49	182.99
Merged-chr11-50229367-3	chr11	50228867	50229867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-2878.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	119.56	86.17	73.07	124.15	88.17	68.32	102.45	61.9	63.7
Merged-chr5-120613010-3	chr5	120612508	120613508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-122.0	NM_028041	71990.0	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	376.98	311.95	201.64	367.05	277.57	228.28	329.53	296.25	177.37
Merged-chr5-125393274-3	chr5	125392768	125393768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3251.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	459.36	447.42	199.79	493.89	387.67	203.36	433.04	555.36	193.6
Merged-chr5-134232276-3	chr5	134231788	134232788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	167.61	206.43	144.29	222.66	223.92	196.12	235.53	252.92	126.78
Merged-chr5-76905512-3	chr5	76905013	76906013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173765)	promoter-TSS (NM_173765)	1.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	299.18	364.02	328.36	283.38	372.27	292.58	368.61	458.09	190.48
Merged-chr1-195241694-3	chr1	195241174	195242174	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64959.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	122.42	213.8	88.8	196.34	218.79	175.23	197.51	173.77	76.82
Merged-chr12-52302396-3	chr12	52301884	52302884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	178225.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	29.17	22.12	22.2	18.89	20.06	11.25	62.31	47.75	29.98
Merged-chr17-10856059-3	chr17	10855555	10856555	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	15696.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	26.31	28.11	16.65	30.36	14.46	25.72	29.57	17.69	24.36
Merged-chr7-80427902-3	chr7	80427393	80428393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-22457.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	58.92	45.16	17.57	56.0	43.85	43.4	64.43	46.87	38.1
Merged-chr7-43533184-3	chr7	43532668	43533668	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021293)	promoter-TSS (NM_021293)	3.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	198.5	223.94	136.89	201.07	219.26	132.63	213.35	267.95	129.28
Merged-chr15-42984238-3	chr15	42983744	42984744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186574.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	20.02	20.27	9.25	17.54	14.46	20.09	3.17	5.31	2.5
Merged-chr16-92864308-3	chr16	92863807	92864807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38233.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	99.54	76.03	59.2	114.03	65.31	70.73	52.81	57.92	31.85
Merged-chr19-34526891-2	chr19	34526418	34527418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021460, intron 1 of 9)	intron (NM_021460, intron 1 of 9)	556.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	270.01	305.04	212.74	304.97	264.04	248.37	358.05	370.98	190.48
Merged-chr11-35834557-3	chr11	35834076	35835076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025936)	promoter-TSS (NM_025936)	-48.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	148.73	124.87	142.44	161.93	169.34	157.54	195.39	150.78	89.93
Merged-chr3-100994451-3	chr3	100993949	100994949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-24786.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	50.91	63.59	40.7	70.85	86.77	67.52	67.6	95.51	52.46
Merged-chr15-79456681-3	chr15	79456092	79457092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14449.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	74.94	65.43	72.15	70.17	53.18	70.73	88.72	80.03	55.58
Merged-chr12-69197149-3	chr12	69196641	69197641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033222)	promoter-TSS (NR_033222)	-70.0	NR_033222	414085.0	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	231.11	273.71	200.71	238.18	238.39	232.29	197.51	221.53	162.38
Merged-chr9-50856961-3	chr9	50856442	50857442	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034085)	promoter-TSS (NM_001034085)	18.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	44.05	36.86	24.97	36.43	37.32	44.21	72.88	42.45	30.6
Merged-chr4-155066133-3	chr4	155065629	155066629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	-901.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	68.65	100.91	85.1	80.97	76.51	97.26	135.19	107.45	56.21
Merged-chr16-58523223-3	chr16	58522711	58523711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018784, exon 1 of 11)	5' UTR (NM_018784, exon 1 of 11)	215.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	88.67	90.31	34.22	115.38	146.95	108.51	74.99	61.9	64.33
Merged-chr1-75479473-3	chr1	75478958	75479958	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	13.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	16.59	22.12	20.35	53.3	39.65	57.07	61.26	37.14	36.85
Merged-chr11-84819557-3	chr11	84819065	84820065	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145433)	promoter-TSS (NM_145433)	-50.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	260.86	211.04	172.04	219.96	207.13	184.87	193.28	207.38	108.04
Merged-chr7-31033948-3	chr7	31033453	31034453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	6364.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	25.74	18.89	43.47	30.36	27.52	41.8	59.15	45.1	51.84
Merged-chr19-5843826-5	chr19	5843361	5844361	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	1617.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	284.88	294.44	235.86	244.92	226.26	248.37	271.44	294.48	183.61
Merged-chr9-50768347-3	chr9	50767833	50768833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198675)	promoter-TSS (NM_198675)	95.0	NM_198675	382137.0	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	191.64	205.97	133.19	181.5	173.07	148.7	171.1	152.55	109.92
Merged-chr16-49982417-3	chr16	49981892	49982892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045001, intron 1 of 3)	intron (NR_045001, intron 1 of 3)	1932.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	74.94	51.15	37.92	70.85	41.05	40.19	63.37	35.37	32.48
Merged-chr3-144570800-1	chr3	144570300	144571300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011828)	promoter-TSS (NM_011828)	373.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	199.07	223.94	135.97	193.64	164.21	127.8	192.23	216.66	110.54
Merged-chr3-90267893-3	chr3	90267369	90268369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356483, intron 2 of 27)	intron (NM_001356483, intron 2 of 27)	1355.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	91.53	75.57	49.02	83.66	55.98	75.56	63.37	68.09	33.1
Merged-chr2-117123210-1	chr2	117122710	117123710	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	2139.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	105.26	103.68	55.5	97.83	68.58	88.42	100.34	99.93	84.31
Merged-chr3-116008244-3	chr3	116007747	116008747	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023214)	promoter-TSS (NM_023214)	-50.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	245.41	219.79	143.37	277.98	215.06	228.28	240.81	267.51	146.14
Merged-chr1-195131120-3	chr1	195130632	195131632	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355061, exon 1 of 9)	5' UTR (NM_001355061, exon 1 of 9)	438.0	NM_001355060	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	181.34	242.37	166.49	197.02	220.19	190.5	167.93	178.19	124.91
Merged-chr6-122669607-3	chr6	122669123	122670123	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37866.0	NM_001289831	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	4.58	2.3	0.92	0.67	1.87	0.0	3.17	3.54	6.25
Merged-chr2-84967571-3	chr2	84967069	84968069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12892.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	15.45	21.66	11.1	14.17	6.53	11.25	20.07	20.78	8.74
Merged-chr7-120918704-3	chr7	120918184	120919184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164096, intron 1 of 19)	intron (NM_001164096, intron 1 of 19)	940.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	63.5	69.12	43.47	58.7	88.17	54.66	52.81	55.71	36.85
Merged-chr12-54398280-3	chr12	54397781	54398781	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6963.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	23.45	19.81	22.2	24.29	17.26	45.82	55.98	27.86	19.36
Merged-chr5-64379153-3	chr5	64378644	64379644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88798.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	282.02	258.5	200.71	228.05	154.41	153.52	256.65	274.59	162.38
Merged-chr1-144200703-3	chr1	144200211	144201211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23339.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	40.62	30.87	9.25	51.95	51.78	26.53	46.47	45.54	20.61
Merged-chr1-161896270-3	chr1	161895768	161896768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19586.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	76.08	117.5	27.75	62.75	71.84	43.4	73.93	104.79	30.6
Merged-chr7-127244474-3	chr7	127243978	127244978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177362)	promoter-TSS (NM_177362)	-48.0	NM_177362	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	78.94	69.12	82.32	85.69	79.31	79.58	99.28	58.37	44.97
Merged-chr2-160048314-3	chr2	160047818	160048818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC2|LINE|L1	31665.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	57.78	40.55	37.0	66.8	30.79	61.09	40.14	30.07	47.46
Merged-chr14-70062220-3	chr14	70061710	70062710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15235.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	171.62	110.59	80.47	173.4	73.71	95.65	165.82	166.7	90.56
Merged-chr9-59486765-3	chr9	59486267	59487267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-393.0	NM_019927	23806.0	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	505.7	352.04	347.78	460.16	281.3	270.88	345.37	292.27	195.48
Merged-chr1-156437519-3	chr1	156437029	156438029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 11 of 15)	intron (NM_009230, intron 11 of 15)	-16614.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	88.67	58.52	54.57	73.54	43.39	58.68	78.16	46.43	47.46
Merged-chr17-84365515-3	chr17	84365020	84366020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	100688.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	38.9	33.64	16.65	37.11	17.73	32.15	28.52	33.6	13.12
Merged-chr4-151996622-1	chr4	151996122	151997122	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172705)	promoter-TSS (NM_172705)	-443.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	225.96	185.24	197.94	246.27	146.02	172.81	248.2	193.67	123.03
Merged-chr10-39731956-3	chr10	39731432	39732432	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038037)	promoter-TSS (NR_038037)	75.0	NR_038037	327744.0	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	384.99	302.27	247.89	308.35	297.17	230.69	290.45	265.3	186.11
Merged-chr15-101246443-3	chr15	101245946	101246946	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20400.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	249.99	180.63	113.77	234.8	181.01	141.47	215.46	221.08	87.43
Merged-chr17-5807999-3	chr17	5807488	5808488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8498.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	51.48	37.78	48.1	51.28	33.59	53.85	38.02	50.41	24.98
Merged-chr7-100493734-2	chr7	100493245	100494245	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011671, intron 1 of 7)	intron (NM_011671, intron 1 of 7)	387.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	335.8	262.19	137.82	346.8	316.29	205.77	273.55	340.47	127.4
Merged-chr15-80264368-3	chr15	80263869	80264869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-63.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	62.93	55.29	77.7	53.98	42.92	86.81	55.98	49.96	40.59
Merged-chr3-108865311-3	chr3	108864798	108865798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165965, intron 8 of 11)	intron (NM_001165965, intron 8 of 11)	24710.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	38.33	39.63	53.65	50.6	30.32	59.48	47.53	42.45	46.22
Merged-chr18-74216094-3	chr18	74215599	74216599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028868)	promoter-TSS (NM_028868)	-113.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	62.93	69.58	66.6	68.15	69.51	53.05	77.1	62.35	40.59
Merged-chr8-25101884-3	chr8	25101414	25102414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	-103.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	197.36	221.18	237.71	201.07	150.68	179.24	197.51	193.67	143.02
Merged-chr2-84956535-3	chr2	84956052	84957052	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021398, intron 12 of 12)	intron (NM_021398, intron 12 of 12)	19906.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	7.44	7.83	12.95	9.45	7.46	6.43	14.79	4.42	0.0
Merged-chrX-38456488-3	chrX	38455978	38456978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010685)	promoter-TSS (NM_010685)	-18.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	143.01	146.99	112.84	122.12	138.55	73.14	128.85	196.76	83.69
Merged-chr10-62340305-3	chr10	62339812	62340812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038038)	promoter-TSS (NR_038038)	109.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	141.3	110.59	130.42	130.9	98.9	108.51	133.08	112.31	66.82
Merged-chr3-81054266-3	chr3	81053771	81054771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	17855.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	130.43	90.77	74.92	122.12	82.57	70.73	69.71	107.0	54.33
Merged-chr2-25365216-2	chr2	25364713	25365713	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149315, intron 1 of 8)	CpG	450.0	NR_149315	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	89.81	73.73	76.77	174.08	203.4	147.9	116.18	138.84	87.43
Merged-chr12-105981567-2	chr12	105981069	105982069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-28694.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	6.29	8.29	12.02	2.02	0.0	3.22	9.51	4.86	5.62
Merged-chr14-46821520-3	chr14	46821013	46822013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022023, intron 1 of 6)	intron (NM_022023, intron 1 of 6)	729.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	217.38	264.49	157.24	255.04	249.12	247.57	307.35	316.15	122.41
Merged-chr11-4261293-3	chr11	4260794	4261794	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3726.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	15.45	5.07	21.27	24.96	9.8	12.86	11.62	11.5	8.74
Merged-chr1-74392661-3	chr1	74392176	74393176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	1067.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	125.28	148.37	116.54	118.75	111.03	148.7	171.1	153.43	135.52
Merged-chr4-106316164-3	chr4	106315667	106316667	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183225)	promoter-TSS (NM_183225)	-46.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	127.57	109.21	139.67	149.11	124.56	140.66	140.47	60.13	62.45
Merged-chr5-76929348-3	chr5	76928848	76929848	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172146, intron 1 of 10)	intron (NM_172146, intron 1 of 10)	-21954.0	NM_001356974	67054.0	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	9.15	9.68	9.25	3.37	2.33	12.06	8.45	3.98	10.62
Merged-chr11-97745009-5	chr11	97744512	97745512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054051)	promoter-TSS (NM_054051)	115.0	NR_106180	102466256.0		NR_106180	ENSMUSG00000098919	Mir8102	Gm27795|mmu-mir-8102	microRNA 8102	ncRNA	116.7	97.23	102.67	118.08	64.84	116.55	117.24	101.7	83.69
Merged-chr11-98938280-2	chr11	98937741	98938741	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 1 of 8)	intron (NM_009024, intron 1 of 8)	523.0	NM_001177302	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	183.63	134.55	125.79	158.56	137.15	147.9	136.25	146.36	84.94
Merged-chr6-34368162-3	chr6	34367682	34368682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008012, exon 10 of 10)	3' UTR (NM_008012, exon 10 of 10)	14036.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	69.79	69.58	31.45	76.24	85.84	61.89	66.54	62.35	28.73
Merged-chr2-24386503-3	chr2	24386000	24387000	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	-116.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	79.52	102.29	76.77	83.66	78.84	91.63	116.18	84.9	73.07
Merged-chr6-95718826-3	chr6	95718376	95719376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011507)	promoter-TSS (NM_011507)	-30.0	NM_011507	20917.0	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	41.19	25.34	34.22	51.28	46.65	36.97	66.54	26.97	13.12
Merged-chr12-110503576-3	chr12	110503068	110504068	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	ORR1B2|LTR|ERVL-MaLR	17829.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	101.83	82.48	78.62	116.73	56.45	90.83	118.29	95.51	57.46
Merged-chr9-106200105-3	chr9	106199612	106200612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026447)	promoter-TSS (NM_026447)	-879.0	NM_026447	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	41.19	39.17	44.4	51.95	34.06	54.66	59.15	57.92	53.71
Merged-chr3-108018008-3	chr3	108017512	108018512	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-39.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	160.75	106.44	63.82	236.83	189.87	133.43	111.96	162.72	68.07
Merged-chr17-67353626-3	chr17	67353119	67354119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	CpG	840.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	442.77	502.72	346.86	430.47	591.53	328.75	473.17	494.34	302.27
Merged-chr2-165034807-3	chr2	165034285	165035285	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144892)	promoter-TSS (NM_144892)	-6.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	105.83	85.71	61.97	153.84	107.3	73.95	103.51	99.93	44.34
Merged-chr19-29488260-3	chr19	29487770	29488770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33717.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	319.78	255.27	178.52	360.3	236.05	240.33	294.68	325.88	143.02
Merged-chr17-46556325-3	chr17	46555822	46556822	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020493)	promoter-TSS (NM_020493)	-160.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	168.76	173.25	131.34	130.9	75.57	127.8	140.47	89.32	103.05
Merged-chr17-35916624-5	chr17	35916131	35917131	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163818)	promoter-TSS (NM_001163818)	-191.0	NM_001361454	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	469.08	393.51	226.61	523.58	405.4	242.74	363.33	551.82	162.38
Merged-chr19-55876685-3	chr19	55876165	55877165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-18656.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	52.63	37.78	49.02	36.43	37.79	30.54	31.69	29.63	27.48
Merged-chr16-30155203-1	chr16	30154703	30155703	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89846.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.57	0.92	3.7	1.35	3.27	1.61	1.06	3.98	13.74
Merged-chr8-26015479-4	chr8	26014927	26015927	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008033, exon 1 of 9)	exon (NM_008033, exon 1 of 9)	174.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	107.55	78.33	92.5	116.73	90.97	93.24	88.72	59.25	49.34
Merged-chr4-149702909-3	chr4	149702385	149703385	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1256.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	179.62	139.16	132.27	193.64	109.16	121.37	165.82	203.84	92.43
Merged-chr17-26716351-3	chr17	26715863	26716863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 1 of 8)	CpG	713.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	121.28	87.55	96.2	112.68	100.77	98.87	156.32	95.95	52.46
Merged-chr19-5512908-3	chr19	5512403	5513403	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	229.39	198.6	138.74	177.45	117.09	125.39	166.88	215.78	104.3
Merged-chr3-154596710-3	chr3	154596219	154597219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357674)	promoter-TSS (NM_001357674)	8.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	49.2	46.54	43.47	70.17	77.44	86.81	79.21	62.79	28.73
Merged-chr4-43442256-3	chr4	43441773	43442773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	-4.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	181.91	193.07	172.97	161.26	166.08	145.49	161.6	168.91	101.17
Merged-chr12-26469291-3	chr12	26468812	26469812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020557)	promoter-TSS (NM_020557)	97.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	126.42	94.46	97.12	78.94	85.37	104.49	125.69	130.0	61.83
Merged-chr11-18970062-3	chr11	18969549	18970549	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	48920.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	7.44	7.83	6.47	12.14	11.2	8.04	4.22	3.98	8.74
Merged-chr7-73541689-3	chr7	73541138	73542138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037569, exon 5 of 5)	non-coding (NR_037569, exon 5 of 5)	108.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	130.43	288.91	135.04	116.73	254.71	158.35	147.87	266.18	157.38
Merged-chr18-36760227-3	chr18	36759706	36760706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026464)	promoter-TSS (NM_026464)	-16.0	NM_026464	67936.0	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	30.32	22.58	44.4	37.11	35.45	43.4	42.25	35.82	21.86
Merged-chr15-98993216-3	chr15	98992715	98993715	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7250.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	263.72	250.67	219.21	227.38	145.08	184.07	262.99	286.97	133.65
Merged-chr19-44360341-3	chr19	44359838	44360838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	27012.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	18.88	22.58	18.5	18.22	10.73	30.54	51.75	33.6	23.73
Merged-chr17-42938924-3	chr17	42938441	42939441	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62517.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	66.36	47.92	43.47	60.05	33.59	52.25	125.69	53.06	51.84
Merged-chr8-22859312-3	chr8	22858828	22859828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081149)	promoter-TSS (NM_001081149)	-211.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	137.86	105.98	113.77	93.11	95.63	89.22	135.19	82.69	83.06
Merged-chr15-36938764-3	chr15	36938255	36939255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	68647.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	49.2	25.34	19.42	23.62	19.13	20.9	28.52	19.9	12.49
Merged-chr6-119902636-3	chr6	119902189	119903189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011236)	promoter-TSS (NM_011236)	-9.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	102.4	136.39	77.7	132.92	105.9	89.22	130.97	118.94	74.94
Merged-chr1-16665259-3	chr1	16664769	16665769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026392)	promoter-TSS (NM_026392)	78.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	100.68	124.41	85.1	109.3	90.5	96.45	122.52	113.19	87.43
Merged-chr16-18680246-1	chr16	18679746	18680746	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-50308.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.58	2.76	1.85	11.47	6.53	1.61	1.06	2.21	2.5
Merged-chr16-45742908-3	chr16	45742400	45743400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272070)	promoter-TSS (NM_001272070)	55.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	152.74	150.22	74.92	176.1	240.72	134.23	154.2	145.03	82.44
Merged-chr11-109470323-3	chr11	109469824	109470824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	2905.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	81.23	48.84	29.6	66.8	49.92	43.4	57.03	57.48	39.97
Merged-chr8-112011991-1	chr8	112011491	112012491	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130868)	promoter-TSS (NM_001130868)	632.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	43.48	44.7	59.2	56.0	30.32	74.75	41.19	27.86	21.86
Merged-chr5-19896048-3	chr5	19895568	19896568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-11450.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	37.18	33.64	31.45	26.99	17.73	16.08	31.69	32.28	37.47
Merged-chr1-51476576-3	chr1	51476097	51477097	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028696, intron 2 of 5)	intron (NM_028696, intron 2 of 5)	1802.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	43.48	45.62	18.5	35.09	24.26	15.27	47.53	43.77	24.36
Merged-chr3-82357979-3	chr3	82357497	82358497	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081230)	promoter-TSS (NM_001081230)	-75.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	4.0	5.99	0.0	17.54	15.86	4.82	4.22	6.19	10.62
Merged-chr15-59393994-3	chr15	59393478	59394478	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	19780.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	44.05	45.16	18.5	60.72	38.25	38.58	28.52	34.49	19.36
Merged-chr7-5038380-3	chr7	5037867	5038867	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	79.0	NM_001039532	654801.0	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	92.67	116.58	116.54	90.41	91.9	97.26	143.64	81.8	68.07
Merged-chr14-101653808-3	chr14	101653306	101654306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016723)	promoter-TSS (NM_016723)	-161.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	118.99	106.44	75.85	170.03	118.03	75.56	133.08	146.36	53.08
Merged-chr6-5362203-3	chr6	5361708	5362708	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21178.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	45.76	34.56	44.4	36.43	20.53	40.19	46.47	35.37	28.1
Merged-chr11-3174437-2	chr11	3173943	3174943	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B4A|SINE|B4	19020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	339.8	774.12	479.13	797.52	1269.37	1483.79	135.19	101.26	670.74
Merged-chr8-125569957-3	chr8	125569472	125570472	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357372)	promoter-TSS (NM_001357372)	-109.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	103.54	70.96	68.45	119.43	80.71	50.64	98.23	70.3	53.08
Merged-chr15-81856268-3	chr15	81855775	81856775	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	CpG	2051.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	82.95	67.74	44.4	65.45	49.92	45.01	58.09	68.98	49.34
Merged-chr5-43880771-3	chr5	43880264	43881264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	11955.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	164.18	152.98	144.29	198.37	115.69	185.68	177.44	218.43	107.42
Merged-chr9-59353415-3	chr9	59352901	59353901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153195, intron 1 of 15)	CpG	107.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	42.33	31.79	32.37	33.06	20.06	48.23	30.63	21.22	18.74
Merged-chr1-134077829-3	chr1	134077331	134078331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1324.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	146.45	175.1	127.64	133.59	160.48	118.16	113.01	130.44	107.42
Merged-chr10-81136306-5	chr10	81135762	81136762	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	-9.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	320.35	268.64	244.19	257.07	187.07	255.6	238.7	223.74	214.84
Merged-chr6-28424004-1	chr6	28423504	28424504	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007480, intron 1 of 5)	intron (NM_007480, intron 1 of 5)	400.0	NM_007480	11844.0	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	148.73	143.76	168.34	130.22	104.5	137.45	149.98	94.62	95.55
Merged-chr9-21601289-3	chr9	21600789	21601789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7040.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	28.6	32.25	22.2	30.36	22.86	19.29	40.14	42.45	40.59
Merged-chr4-141993811-1	chr4	141993311	141994311	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	10819.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	14.87	12.44	15.72	16.19	3.27	26.53	13.73	3.54	12.49
Merged-chr1-166003432-3	chr1	166002938	166003938	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011137)	promoter-TSS (NM_011137)	-804.0	NM_198932	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	40.04	40.55	32.37	37.11	75.11	61.09	52.81	51.73	27.48
Merged-chr15-83129758-3	chr15	83129253	83130253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-6952.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	131.57	123.49	97.12	161.93	115.23	120.57	149.98	168.02	66.82
Merged-chr16-57422274-3	chr16	57421802	57422802	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	69025.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	88.1	80.18	55.5	96.48	73.24	45.01	55.98	72.96	48.09
Merged-chr4-141016592-3	chr4	141016092	141017092	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008546)	TTS (NM_008546)	5955.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	63.5	42.85	51.8	86.36	83.04	84.4	98.23	111.87	37.47
Merged-chr4-132593089-3	chr4	132592610	132593610	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29043.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	133.29	130.4	52.72	161.26	136.69	94.85	125.69	125.58	54.33
Merged-chr2-167753005-3	chr2	167752517	167753517	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61840.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	212.23	158.97	159.09	221.98	189.4	255.6	212.29	189.25	131.78
Merged-chr9-32146437-3	chr9	32145948	32146948	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	30312.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	25.74	51.61	46.25	51.28	34.99	32.15	58.09	40.24	23.73
Merged-chr2-103485161-3	chr2	103484656	103485656	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009804)	promoter-TSS (NM_009804)	-3.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	96.68	119.8	70.3	120.1	123.16	112.53	142.59	157.41	101.17
Merged-chr7-44553499-3	chr7	44552995	44553995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009473, intron 2 of 9)	intron (NM_009473, intron 2 of 9)	470.0	NM_009473	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	275.73	299.05	241.41	203.09	198.27	202.55	183.78	257.78	175.49
Merged-chr1-167370080-3	chr1	167369606	167370606	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20115.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	4.58	5.53	6.47	0.67	9.8	3.22	4.22	3.98	0.0
Merged-chr7-34912828-3	chr7	34912335	34913335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 1 of 14)	intron (NM_008820, intron 1 of 14)	428.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	183.06	185.24	104.52	150.46	182.4	148.7	178.5	154.32	63.08
Merged-chr16-35776882-3	chr16	35776396	35777396	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 1 of 8)	intron (NR_152314, intron 1 of 8)	6510.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	176.76	152.52	86.95	153.16	137.62	151.92	101.39	93.74	69.95
Merged-chr14-20546575-3	chr14	20546082	20547082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310427)	promoter-TSS (NM_001310427)	-9.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	198.5	105.98	130.42	159.91	79.77	128.61	180.61	62.35	79.94
Merged-chr4-89354192-1	chr4	89353692	89354692	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-43160.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.58	13.36	5.55	7.42	13.53	3.22	5.28	10.17	6.87
Merged-chr13-110968269-3	chr13	110967771	110968771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64425.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	6.86	2.3	3.7	6.75	4.67	6.43	6.34	3.98	3.75
Merged-chr9-118617449-3	chr9	118616964	118617964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	RLTR11C_MM|LTR|ERVK	10755.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	210.52	155.75	106.37	230.08	167.01	136.64	190.11	200.3	84.31
Merged-chr12-38863607-3	chr12	38863100	38864100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	79889.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	55.49	37.78	23.12	58.03	32.66	44.21	40.14	32.28	40.59
Merged-chr3-58525902-3	chr3	58525417	58526417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030685)	promoter-TSS (NM_030685)	-33.0	NM_030685	28146.0	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	236.26	236.84	173.89	184.2	216.46	192.91	216.52	236.56	167.37
Merged-chr18-67775299-3	chr18	67774801	67775801	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045376)	TTS (NR_045376)	425.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	195.07	175.56	225.69	199.72	158.61	217.83	259.82	185.71	116.16
Merged-chr11-89028051-3	chr11	89027545	89028545	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	28642.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	106.4	99.53	92.5	95.81	90.97	109.32	192.23	239.65	108.04
Merged-chr6-83649243-1	chr6	83648743	83649743	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	6873.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	44.05	44.24	37.92	37.78	56.45	57.07	66.54	52.18	31.85
Merged-chr8-126551164-3	chr8	126550625	126551625	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42311.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	89.81	64.05	46.25	127.52	90.97	61.09	50.7	46.43	23.11
Merged-chr17-47883254-2	chr17	47882761	47883761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028767, intron 3 of 16)	intron (NM_028767, intron 3 of 16)	41371.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	6.86	9.68	5.55	10.12	7.0	16.08	0.0	1.33	1.25
Merged-chr5-135479382-3	chr5	135478880	135479880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	65742.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	163.61	136.39	134.12	174.08	132.49	137.45	117.24	153.43	94.93
Merged-chr2-118008178-3	chr2	118007669	118008669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	103033.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	64.07	40.09	27.75	74.89	34.99	40.19	55.98	71.63	31.23
Merged-chr2-167368604-3	chr2	167368100	167369100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19422.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	128.14	74.65	49.02	162.61	84.9	60.28	100.34	119.83	54.96
Merged-chr2-76673129-3	chr2	76672635	76673635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-37.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	74.94	104.14	72.15	87.71	97.97	68.32	102.45	101.7	84.31
Merged-chr12-59131367-3	chr12	59130832	59131832	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-121.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	667.59	667.68	532.77	630.86	696.03	512.01	616.81	604.0	344.74
Merged-chr17-33358854-3	chr17	33358339	33359339	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207541)	promoter-TSS (NM_207541)	39.0	NM_207541	224694.0	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	25.74	38.71	16.65	35.76	28.92	43.4	43.3	33.16	31.23
Merged-chr15-25622394-3	chr15	25621883	25622883	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019472)	promoter-TSS (NM_019472)	-167.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	104.11	92.62	88.8	80.97	60.18	55.46	64.43	59.69	51.21
Merged-chr2-166730365-3	chr2	166729872	166730872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16540.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	199.07	122.57	65.67	287.43	191.27	107.71	248.2	234.35	86.18
Merged-chr11-103028421-3	chr11	103027907	103028907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-136.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	270.01	303.2	130.42	262.47	206.66	151.92	295.73	355.06	137.4
Merged-chr7-96483063-3	chr7	96482565	96483565	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-141101.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	72.08	73.73	83.25	49.25	62.98	86.81	59.15	44.66	45.59
Merged-chr4-127022301-3	chr4	127021785	127022785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023603, intron 1 of 9)	CpG	984.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	308.91	332.23	289.51	284.06	286.9	248.37	248.2	231.25	223.58
Merged-chr11-3157931-1	chr11	3157431	3158431	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 11 of 33)	exon (NM_030207, exon 11 of 33)	33910.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	124.14	204.13	138.74	211.19	243.05	327.14	12.67	16.36	257.31
Merged-chr6-134920325-3	chr6	134919774	134920774	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009875)	promoter-TSS (NM_009875)	-127.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	287.17	274.17	186.84	312.39	274.77	250.78	235.53	267.95	156.13
Merged-chr2-154569228-3	chr2	154568729	154569729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291105, exon 1 of 7)	5' UTR (NM_001291105, exon 1 of 7)	197.0	NM_001291105	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	106.4	82.94	128.57	154.51	109.63	99.67	123.57	110.1	89.93
Merged-chr13-37679009-3	chr13	37678498	37679498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147040.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	131.57	101.37	59.2	136.29	83.04	97.26	92.94	88.88	66.82
Merged-chr16-50736943-3	chr16	50736448	50737448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4175.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	286.6	313.33	163.72	282.03	247.25	219.43	261.93	333.39	141.77
Merged-chr5-136458676-3	chr5	136458180	136459180	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-82877.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	40.62	22.58	16.65	34.41	20.06	8.04	17.96	10.17	9.37
Merged-chr5-43114130-1	chr5	43113630	43114630	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119333.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	18.88	26.73	9.25	18.22	24.72	17.68	28.52	21.67	13.74
Merged-chr15-12027981-3	chr15	12027487	12028487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31980.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	2.29	5.53	3.7	6.07	3.73	3.22	5.28	3.1	7.49
Merged-chrUn_JH584304-41387-1	chrUn_JH584304	40887	41887	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18302.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	16.9	10.61	0.0
Merged-chr19-9943188-5	chr19	9942640	9943640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37460.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	81.8	51.61	33.3	115.38	82.11	55.46	86.61	56.16	14.99
Merged-chr7-101027830-3	chr7	101027319	101028319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15766.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	29.17	19.35	18.5	39.81	35.92	36.17	21.12	13.27	3.75
Merged-chr18-82692368-3	chr18	82691859	82692859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177832, intron 1 of 29)	CpG	375.0	NM_177832	329002.0	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	157.31	124.87	159.09	163.96	125.49	119.76	177.44	131.32	88.68
Merged-chr14-12284810-3	chr14	12284278	12285278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284384, intron 1 of 4)	intron (NM_001284384, intron 1 of 4)	575.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	84.09	113.81	151.69	94.46	123.62	122.18	166.88	143.26	76.82
Merged-chr19-7226761-3	chr19	7226248	7227248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027643, exon 8 of 8)	3' UTR (NM_027643, exon 8 of 8)	-9132.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	72.08	72.34	95.27	68.82	54.11	86.01	83.44	87.11	49.34
Merged-chr15-85089691-3	chr15	85089201	85090201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080470, exon 18 of 25)	exon (NM_080470, exon 18 of 25)	42256.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	123.56	164.96	87.87	124.82	114.29	118.16	194.34	240.98	76.82
Merged-chr16-37597567-3	chr16	37597081	37598081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027778, intron 3 of 12)	intron (NR_027778, intron 3 of 12)	17428.0	NM_013547	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	29.17	10.14	1.85	18.22	9.8	13.66	36.97	18.13	6.87
Merged-chr9-42126870-3	chr9	42126377	42127377	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2580.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.0	5.07	4.62	6.07	4.67	3.22	8.45	3.1	10.62
Merged-chr15-75862285-3	chr15	75861761	75862761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026960)	promoter-TSS (NM_026960)	-78.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	106.97	103.68	70.3	96.48	82.57	83.59	98.23	99.93	94.3
Merged-chr11-82870254-3	chr11	82869759	82870759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	485.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	209.94	213.8	135.97	215.91	188.47	142.27	233.42	224.18	126.15
Merged-chr15-98511484-3	chr15	98510992	98511992	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8342.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	323.78	278.31	172.97	268.54	245.85	243.55	283.06	347.99	159.88
Merged-chr6-136497986-3	chr6	136497502	136498502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20849.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	61.78	52.99	24.05	51.28	46.18	32.15	92.94	97.28	52.46
Merged-chr11-80081130-3	chr11	80080642	80081642	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277106)	promoter-TSS (NM_001277106)	-151.0	NM_018776	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	176.19	135.93	92.5	165.31	125.49	146.29	142.59	134.86	100.55
Merged-chr2-124753867-3	chr2	124753362	124754362	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100281.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	45.19	54.83	49.02	55.33	34.99	64.3	38.02	47.31	58.71
Merged-chr11-79278757-3	chr11	79278241	79279241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24046.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	90.96	80.18	49.02	104.58	63.45	95.65	104.56	88.43	66.2
Merged-chr12-80924400-3	chr12	80923906	80924906	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033786)	promoter-TSS (NR_033786)	41.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	36.61	39.17	43.47	48.58	30.32	41.8	53.87	46.43	41.84
Merged-chr11-60931955-3	chr11	60931445	60932445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027800)	promoter-TSS (NR_027800)	-78.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	137.86	162.2	164.64	143.04	152.55	152.72	149.98	147.68	108.04
Merged-chr13-113627317-2	chr13	113626823	113627823	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8759.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	3.43	3.23	1.85	12.82	16.33	20.9	14.79	23.88	7.49
Merged-chr7-19667632-3	chr7	19667136	19668136	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2606.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	51.48	37.32	29.6	42.51	28.46	47.42	49.64	44.22	38.1
Merged-chr4-44169319-3	chr4	44168814	44169814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1031.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	32.61	41.93	42.55	22.94	16.79	43.4	42.25	39.35	31.85
Merged-chr4-133159311-3	chr4	133158810	133159810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	28677.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	365.54	367.24	247.89	366.37	284.57	260.43	315.8	422.27	224.83
Merged-chr7-80057571-3	chr7	80057063	80058063	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	17694.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	80.09	69.12	92.5	75.57	59.71	61.09	55.98	46.43	37.47
Merged-chr18-34118168-3	chr18	34117655	34118655	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102829.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	53.2	64.51	51.8	59.38	33.59	26.53	83.44	115.85	43.09
Merged-chr4-133011485-4	chr4	133010963	133011963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146155)	promoter-TSS (NM_146155)	-43.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	24.03	18.43	18.5	20.92	14.0	30.54	16.9	15.92	21.23
Merged-chr16-97462992-3	chr16	97462496	97463496	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-90.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	74.37	81.1	71.22	79.62	57.85	68.32	78.16	91.09	78.69
Merged-chr15-68068443-3	chr15	68067919	68068919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190437.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	18.88	9.22	1.85	20.92	21.46	18.49	24.29	13.27	8.12
Merged-chr7-41633533-3	chr7	41633029	41634029	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360680)	promoter-TSS (NM_001360680)	-2.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	126.42	170.03	153.54	125.5	131.09	157.54	179.55	187.48	103.67
Merged-chr14-33324803-3	chr14	33324300	33325300	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86224.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	18.88	11.06	11.1	11.47	6.06	12.06	5.28	5.31	5.62
Merged-chr8-125054057-3	chr8	125053557	125054557	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-138.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	145.3	109.67	122.09	187.57	139.95	149.5	167.93	187.92	106.17
Merged-chr1-167337936-3	chr1	167337457	167338457	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12034.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	113.84	156.67	91.57	147.09	134.35	139.06	111.96	189.69	73.69
Merged-chr6-145803065-3	chr6	145802553	145803553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5330.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	234.54	221.64	82.32	313.74	263.11	135.84	117.24	141.94	74.94
Merged-chr14-19417452-3	chr14	19416995	19417995	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	185092.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	337.51	1542.71	344.08	433.17	1796.99	343.22	969.58	916.61	382.84
Merged-chr4-88407032-3	chr4	88406539	88407539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 41 of 43)	intron (NM_001081184, intron 41 of 43)	31887.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	27.46	25.34	25.9	35.76	21.93	32.15	29.57	29.63	28.1
Merged-chr12-55474016-3	chr12	55473531	55474531	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18616.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	168.76	132.71	105.44	215.91	147.88	144.68	143.64	182.62	96.8
Merged-chr1-64376575-3	chr1	64376081	64377081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156223.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	147.02	150.68	97.12	124.15	163.28	174.42	124.63	150.78	110.54
Merged-chr3-52198647-3	chr3	52198150	52199150	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69687.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	96.11	139.16	82.32	119.43	104.5	99.67	95.06	157.85	66.2
Merged-chr5-32197894-3	chr5	32197400	32198400	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34808.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	20.02	23.96	8.32	22.94	14.46	18.49	19.01	22.11	13.12
Merged-chr13-113611422-2	chr13	113610926	113611926	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7138.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	47.48	21.66	21.27	23.62	11.2	26.53	27.46	20.78	19.36
Merged-chr2-144600029-3	chr2	144599510	144600510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025314)	promoter-TSS (NM_025314)	57.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	164.75	146.99	86.95	172.73	166.08	107.71	153.15	132.65	56.21
Merged-chr14-8214453-3	chr14	8213963	8214963	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305936)	promoter-TSS (NM_001305936)	-39.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	218.52	266.79	218.29	274.61	354.55	233.1	327.42	359.04	158.63
Merged-chr16-44138320-3	chr16	44137853	44138853	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	906.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	387.85	408.25	304.31	379.19	354.55	290.97	360.16	461.62	228.58
Merged-chr6-124913441-3	chr6	124912941	124913941	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026988)	TTS (NM_026988)	-1736.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	85.81	56.22	45.32	84.34	63.45	64.3	63.37	80.03	45.59
Merged-chr18-5125519-3	chr18	5125025	5126025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40206.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	34.9	43.31	49.02	43.86	25.66	61.89	38.02	25.65	38.1
Merged-chr1-85793383-3	chr1	85792896	85793896	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133781)	promoter-TSS (NM_133781)	-45.0	NM_133781	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	177.34	160.35	125.79	155.19	137.62	133.43	164.76	87.11	108.67
Merged-chr3-59211902-3	chr3	59211367	59212367	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028808)	promoter-TSS (NM_028808)	-985.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	204.22	240.99	117.47	197.69	143.68	128.61	163.71	187.92	79.94
Merged-chr1-172314283-3	chr1	172313798	172314798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	1931.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	239.12	185.7	108.22	278.66	202.0	127.0	100.34	90.2	36.22
Merged-chr17-34263219-3	chr17	34262735	34263735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207105)	promoter-TSS (NM_207105)	8.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	261.43	223.02	151.69	134.94	104.96	92.44	192.23	265.3	110.54
Merged-chr9-40196178-3	chr9	40195683	40196683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153114, intron 1 of 6)	intron (NR_153114, intron 1 of 6)	3867.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	66.36	96.76	64.75	68.15	60.65	38.58	92.94	90.2	61.2
Merged-chr4-117124891-3	chr4	117124422	117125422	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024078, intron 1 of 6)	intron (NR_024078, intron 1 of 6)	803.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	128.71	126.25	116.54	188.92	178.67	211.4	161.6	212.24	102.42
Merged-chr12-51692071-3	chr12	51691569	51692569	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_052973)	promoter-TSS (NM_052973)	-155.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	305.48	282.92	244.19	282.71	251.91	254.0	304.18	226.83	209.22
Merged-chr12-104174951-3	chr12	104174444	104175444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21072.0	NM_008458	16625.0	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	29.75	42.39	34.22	51.28	31.26	25.72	77.1	92.86	39.35
Merged-chr16-57301764-3	chr16	57301255	57302255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025599)	TTS (NM_025599)	-8904.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	33.18	14.28	22.2	29.01	14.46	17.68	39.08	52.18	36.22
Merged-chr3-146352369-3	chr3	146351890	146352890	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26554.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	3.43	3.69	7.4	0.0	2.8	3.22	3.17	4.42	1.25
Merged-chr6-113650279-3	chr6	113649766	113650766	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11799.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	70.36	54.83	56.42	76.92	54.11	99.67	76.05	52.18	48.09
Merged-chr12-100013064-3	chr12	100012558	100013558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	48559.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	41.19	47.0	43.47	47.9	41.05	42.6	35.91	41.12	28.1
Merged-chr18-50125799-3	chr18	50125303	50126303	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2398.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	102.97	78.33	68.45	68.82	62.05	75.56	71.82	72.52	72.45
Merged-chr7-67958236-3	chr7	67957740	67958740	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	5983.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	14.87	17.05	1.85	20.24	8.4	4.02	12.67	6.19	4.37
Merged-chr11-46812614-3	chr11	46812110	46813110	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	intron (NM_178759, intron 1 of 8)	1811.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	206.51	253.43	92.5	194.99	183.34	156.74	266.16	300.23	91.18
Merged-chr4-154904657-3	chr4	154904156	154905156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	-5613.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	5.72	5.99	0.0	6.75	5.6	8.04	7.39	6.19	9.37
Merged-chr3-57847636-3	chr3	57847112	57848112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019410, exon 1 of 3)	5' UTR (NM_019410, exon 1 of 3)	145.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	20.59	6.91	11.1	8.77	5.13	20.9	8.45	5.31	6.25
Merged-chr16-21694745-3	chr16	21694248	21695248	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-83.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	263.72	194.91	192.39	299.57	217.86	244.35	255.6	193.67	132.4
Merged-chr8-72161099-3	chr8	72160585	72161585	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023126)	promoter-TSS (NM_023126)	-115.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	240.26	209.2	165.57	197.69	179.14	156.74	213.35	222.85	133.02
Merged-chr2-179976861-3	chr2	179976369	179977369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033782)	promoter-TSS (NR_033782)	16.0	NR_033782	66730.0	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	114.98	95.38	96.2	102.56	90.97	173.62	153.15	118.94	107.42
Merged-chr6-100211381-3	chr6	100210880	100211880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75978.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	56.06	32.72	26.82	49.25	41.99	38.58	54.92	33.6	18.74
Merged-chr10-77291257-3	chr10	77290771	77291771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004429, exon 11 of 11)	non-coding (NR_004429, exon 11 of 11)	31971.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	68.07	76.95	27.75	72.19	82.11	54.66	104.56	80.92	40.59
Merged-chrUn_JH584304-62482-1	chrUn_JH584304	61982	62982	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2793.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	54.92	65.0	0.0
Merged-chr19-6077178-3	chr19	6076733	6077733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081041)	promoter-TSS (NM_001081041)	-46.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	107.55	92.62	112.84	102.56	94.7	101.28	126.74	115.85	80.56
Merged-chr6-86849386-3	chr6	86848880	86849880	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028298)	promoter-TSS (NR_028298)	60.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	313.49	282.92	197.94	312.39	302.3	263.64	316.86	299.35	169.25
Merged-chr18-34331101-3	chr18	34330599	34331599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-46.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	259.14	328.08	186.84	280.68	317.69	255.6	377.06	381.59	174.24
Merged-chr14-64187548-3	chr14	64187048	64188048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	83225.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	12.59	19.35	3.7	13.49	21.93	10.45	10.56	3.98	6.25
Merged-chr11-61956765-3	chr11	61956286	61957286	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281818)	promoter-TSS (NM_001281818)	23.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.0	0.92	3.7	9.45	1.4	0.0	5.28	1.77	3.75
Merged-chr9-110464183-3	chr9	110463683	110464683	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 1 of 9)	intron (NM_001360306, intron 1 of 9)	12511.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	41.19	54.37	49.95	33.06	30.32	25.72	28.52	36.26	16.86
Merged-chr3-148804062-3	chr3	148803582	148804582	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	150553.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	21.74	22.12	15.72	28.34	18.19	13.66	39.08	13.71	15.61
Merged-chr10-61135376-3	chr10	61134873	61135873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	12311.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	37.76	68.2	38.85	50.6	36.85	55.46	72.88	69.42	28.73
Merged-chr6-114364837-3	chr6	114364338	114365338	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-33098.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	24.6	16.13	12.02	25.64	19.59	21.7	15.84	17.24	9.99
Merged-chr11-60537311-1	chr11	60536811	60537811	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172943)	promoter-TSS (NM_172943)	-372.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	390.71	389.82	241.41	389.31	340.08	307.85	324.25	359.48	195.48
Merged-chr10-96617893-2	chr10	96617405	96618405	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007569, intron 1 of 1)	intron (NM_007569, intron 1 of 1)	904.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	360.39	360.79	313.56	350.85	292.03	278.91	328.47	414.31	244.81
Merged-chr16-56717526-3	chr16	56717021	56718021	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252443)	promoter-TSS (NM_001252443)	-71.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	156.17	156.21	122.09	116.73	133.89	135.04	119.35	124.25	93.68
Merged-chr14-121409185-1	chr14	121408685	121409685	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29955.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	11.44	14.28	7.4	13.49	7.0	12.86	12.67	15.03	5.0
Merged-chr15-79328311-3	chr15	79327803	79328803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199024)	promoter-TSS (NM_001199024)	68.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	492.54	384.29	203.49	484.45	387.67	221.85	454.16	439.96	170.5
Merged-chr19-40702684-3	chr19	40702163	40703163	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	42893.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	45.76	28.11	33.3	56.68	34.06	40.99	53.87	40.24	26.85
Merged-chr6-124930918-3	chr6	124930399	124931399	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170341)	promoter-TSS (NM_001170341)	-489.0	NM_145385	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	129.86	64.05	94.35	122.12	47.12	66.71	103.51	72.52	56.21
Merged-chrX-150478177-3	chrX	150477654	150478654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19004.0	NR_152724	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	130.43	135.01	70.3	95.14	90.5	76.36	105.62	131.32	61.2
Merged-chr1-180835389-3	chr1	180834899	180835899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15752.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	97.25	60.82	66.6	93.79	82.11	77.16	74.99	84.01	73.69
Merged-chr12-112678779-3	chr12	112678264	112679264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001100460)	promoter-TSS (NM_001100460)	-76.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	17.73	7.83	22.2	20.24	12.13	16.88	19.01	5.75	4.37
Merged-chr9-57655897-3	chr9	57655394	57656394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2263.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	13.16	12.44	14.8	15.52	9.8	9.65	14.79	15.92	5.62
Merged-chr1-16747456-3	chr1	16746956	16747956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59000.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	25.17	29.49	23.12	33.06	23.33	24.11	13.73	14.15	14.99
Merged-chr14-70781317-3	chr14	70780812	70781812	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6931.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	81.8	71.42	65.67	64.77	66.24	98.87	63.37	89.32	75.57
Merged-chrX-166479767-3	chrX	166479281	166480281	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019773)	promoter-TSS (NM_019773)	86.0	NM_019773	56382.0	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	183.06	168.19	115.62	198.37	221.13	172.81	181.66	225.06	91.81
Merged-chr19-45006554-3	chr19	45006061	45007061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	3.0	NM_153796	226153.0	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	121.85	129.48	145.22	115.38	129.22	155.93	126.74	133.98	88.68
Merged-chr18-44827869-1	chr18	44827369	44828369	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	-796.0	NM_001163013	240255.0	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	105.26	89.39	61.05	64.1	76.04	57.07	124.63	121.15	40.59
Merged-chr13-45266883-3	chr13	45266376	45267376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122866.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	252.85	198.6	145.22	251.67	219.26	143.88	162.65	190.57	118.04
Merged-chr9-106438374-3	chr9	106437872	106438872	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276442)	promoter-TSS (NM_001276442)	-136.0	NM_025371	109652.0	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	56.06	52.99	37.92	58.7	37.79	57.87	51.75	42.89	33.72
Merged-chr9-25482570-3	chr9	25482118	25483118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1021.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	58.35	38.25	14.8	88.39	40.12	27.33	73.93	66.77	28.1
Merged-chr4-105496371-1	chr4	105495871	105496871	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	339024.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.29	3.69	1.85	4.72	4.67	3.22	6.34	11.5	7.49
Merged-chr1-35813827-3	chr1	35813297	35814297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-254603.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	21.17	17.51	8.32	12.14	9.8	8.84	16.9	8.4	3.12
Merged-chrX-167167476-3	chrX	167166968	167167968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41750.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	36.04	64.51	22.2	41.16	20.53	34.56	28.52	53.94	23.73
Merged-chr10-67285388-3	chr10	67284873	67285873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001036293)	promoter-TSS (NM_001036293)	-92.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	240.26	239.15	207.19	216.58	226.72	180.05	236.59	233.46	147.39
Merged-chr12-98266325-3	chr12	98265833	98266833	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2302.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	216.24	230.39	136.89	220.63	178.67	147.9	190.11	240.54	119.91
Merged-chr14-8080307-3	chr14	8079815	8080815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348727)	promoter-TSS (NM_001348727)	2.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	224.82	266.79	195.17	252.34	281.77	253.19	266.16	297.58	171.75
Merged-chr1-135729279-4	chr1	135728819	135729819	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	CpG	152.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	243.69	191.69	144.29	293.5	170.28	160.76	268.27	238.33	131.15
Merged-chr1-179518011-3	chr1	179517521	179518521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027188)	promoter-TSS (NM_027188)	20.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	41.19	47.46	42.55	57.35	79.31	53.05	59.15	61.9	25.61
Merged-chr5-65091712-3	chr5	65091213	65092213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15855.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	169.9	176.48	123.94	158.56	147.88	108.51	179.55	230.37	91.18
Merged-chr18-39369545-3	chr18	39369043	39370043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 21 of 21)	intron (NM_001361073, intron 21 of 21)	117702.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	85.24	90.77	68.45	79.62	53.65	82.79	78.16	65.88	53.71
Merged-chr5-145116535-3	chr5	145116030	145117030	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2274.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	149.88	152.52	118.39	114.03	93.77	98.87	151.03	144.15	91.18
Merged-chr18-39636273-3	chr18	39635778	39636778	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137219.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	129.28	115.66	129.49	159.91	115.23	176.03	190.11	178.19	129.28
Merged-chr11-31736269-3	chr11	31735776	31736776	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64414.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	69.22	42.39	56.42	90.41	60.18	45.82	94.0	62.79	36.22
Merged-chr13-24444899-3	chr13	24444406	24445406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	29784.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	45.76	80.18	32.37	68.15	52.25	65.11	76.05	99.49	53.71
Merged-chr4-150545001-3	chr4	150544487	150545487	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	107187.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	97.82	123.95	67.52	128.87	85.84	99.67	128.85	156.09	91.18
Merged-chr1-39535688-3	chr1	39535182	39536182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-19.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	95.53	97.69	68.45	83.66	86.3	69.13	126.74	99.05	56.83
Merged-chr5-115158829-3	chr5	115158360	115159360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-684.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	238.55	242.83	101.74	250.99	241.18	172.01	178.5	237.0	91.81
Merged-chr10-127266292-3	chr10	127265791	127266791	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190454)	promoter-TSS (NM_001190454)	29.0	NM_001190453	69654.0	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	208.8	182.47	184.99	156.53	168.88	146.29	177.44	162.72	114.91
Merged-chr10-30719100-3	chr10	30718595	30719595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-63228.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	27.46	41.93	31.45	33.74	23.79	28.94	28.52	41.56	23.73
Merged-chr9-90060496-3	chr9	90059996	90060996	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007801, exon 2 of 12)	exon (NM_007801, exon 2 of 12)	6229.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	251.13	260.34	139.67	236.15	182.4	122.98	173.21	248.06	115.54
Merged-chr4-102624319-3	chr4	102623851	102624851	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34508.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	266.58	268.64	167.42	224.68	179.14	144.68	230.25	285.64	151.76
Merged-chr2-165055614-3	chr2	165055126	165056126	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170704)	promoter-TSS (NM_170704)	-10.0	NM_170704	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	143.01	92.62	74.92	103.91	55.98	87.61	193.28	163.16	104.3
Merged-chr11-118290291-3	chr11	118289811	118290811	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-67.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	172.19	153.9	131.34	194.99	178.67	139.06	167.93	175.54	98.68
Merged-chr1-165697745-3	chr1	165697242	165698242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	10352.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	56.06	56.68	57.35	49.93	39.19	61.09	49.64	46.43	49.96
Merged-chr6-28262470-3	chr6	28261961	28262961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081678)	promoter-TSS (NM_001081678)	-860.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	134.43	99.99	91.57	134.27	66.71	124.59	140.47	87.99	61.83
Merged-chr11-6528813-3	chr11	6528319	6529319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045893)	promoter-TSS (NR_045893)	-59.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	204.8	251.59	123.94	200.39	204.33	157.54	214.41	205.17	86.81
Merged-chr19-4066489-5	chr19	4066022	4067022	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7075.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	117.27	92.16	63.82	109.98	81.17	107.71	89.78	82.69	51.21
Merged-chr1-72583205-3	chr1	72582710	72583710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018817)	promoter-TSS (NM_018817)	-41.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	41.19	48.38	56.42	37.11	23.33	49.83	61.26	38.03	28.1
Merged-chr16-32972705-3	chr16	32972221	32973221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081255, intron 6 of 20)	intron (NM_001081255, intron 6 of 20)	58621.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	39.47	17.97	14.8	31.71	22.86	7.23	20.07	37.58	19.98
Merged-chr1-71557103-3	chr1	71556599	71557599	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026195)	promoter-TSS (NM_026195)	-57.0	NM_026195	108147.0	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	35.47	29.49	20.35	46.56	49.45	44.21	48.58	42.01	24.98
Merged-chr2-126933184-3	chr2	126932672	126933672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023220)	promoter-TSS (NM_023220)	63.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	346.09	305.96	181.29	273.26	235.12	204.97	297.84	340.91	184.86
Merged-chr1-84839649-4	chr1	84839201	84840201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-140.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	92.1	76.49	102.67	98.51	79.31	83.59	116.18	86.66	66.82
Merged-chr10-77531926-3	chr10	77531406	77532406	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	1558.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	101.83	100.45	81.4	130.22	86.3	98.06	174.27	162.72	73.69
Merged-chr3-32510551-3	chr3	32510056	32511056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144519)	promoter-TSS (NM_144519)	6.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	131.57	115.2	135.97	180.82	121.76	106.1	188.0	107.0	87.43
Merged-chr9-54863712-3	chr9	54863239	54864239	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	-16.0	NM_022655	64602.0	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	109.83	74.19	74.92	98.51	91.44	93.24	68.65	58.81	49.96
Merged-chr4-19895864-3	chr4	19895382	19896382	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	26684.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	146.45	154.36	109.14	186.9	160.95	155.13	172.16	217.1	105.55
Merged-chr15-80948452-3	chr15	80947940	80948940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009634)	promoter-TSS (NM_009634)	-50.0	NM_009634	11564.0	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	76.08	84.32	76.77	71.52	81.17	88.42	76.05	85.78	54.96
Merged-chr5-30916258-3	chr5	30915744	30916744	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133918, intron 3 of 7)	intron (NM_133918, intron 3 of 7)	2458.0	NM_133918	100952.0	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	30.89	49.76	37.92	41.83	20.53	62.7	54.92	28.3	35.6
Merged-chr2-181693844-3	chr2	181693284	181694284	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291208)	promoter-TSS (NM_001291208)	26.0	NM_001291206	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	175.62	152.98	166.49	172.73	120.83	156.74	190.11	157.41	125.53
Merged-chr7-131362823-3	chr7	131362319	131363319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026655)	promoter-TSS (NM_026655)	-93.0	NR_152380	68277.0	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	28.03	27.19	37.92	42.51	41.52	65.91	44.36	23.43	24.98
Merged-chr7-63925493-3	chr7	63925026	63926026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	8669.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	76.66	88.47	45.32	56.68	61.58	40.99	49.64	56.6	34.97
Merged-chr6-83317199-3	chr6	83316701	83317701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008638, intron 1 of 7)	intron (NM_008638, intron 1 of 7)	403.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	25.17	27.19	8.32	26.31	12.13	11.25	30.63	23.43	9.99
Merged-chr2-137116931-3	chr2	137116451	137117451	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013822)	promoter-TSS (NM_013822)	-431.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	16.02	8.29	12.02	19.57	17.73	8.84	5.28	5.75	6.25
Merged-chr7-44548905-3	chr7	44548398	44549398	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011131)	promoter-TSS (NM_011131)	-83.0	NM_011131	18971.0	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	25.17	32.25	29.6	18.89	18.19	19.29	12.67	30.95	21.86
Merged-chr14-44048471-3	chr14	44047978	44048978	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	54.92	61.75	63.82	45.21	25.66	72.34	25.35	24.76	45.59
Merged-chr19-47537116-3	chr19	47536636	47537636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-17.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	22.88	36.86	49.02	31.71	33.12	52.25	43.3	35.82	24.98
Merged-chr7-109960487-3	chr7	109959986	109960986	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021494)	promoter-TSS (NM_021494)	-16.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	288.32	155.75	172.04	267.86	147.42	155.93	185.89	121.6	83.06
Merged-chr6-29513455-3	chr6	29512961	29513961	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5509.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	40.62	49.3	46.25	33.06	41.52	31.35	69.71	53.94	35.6
Merged-chr9-77959943-3	chr9	77959417	77960417	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 2 of 7)	intron (NM_134255, intron 2 of 7)	42552.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	35.47	38.25	51.8	49.93	32.66	32.96	48.58	31.84	23.11
Merged-chr4-132884487-3	chr4	132883982	132884982	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133887)	promoter-TSS (NM_133887)	-24.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	214.52	162.2	169.27	184.87	201.07	165.58	147.87	168.47	119.28
Merged-chr3-83839603-3	chr3	83839100	83840100	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011905, intron 2 of 2)	intron (NM_011905, intron 2 of 2)	2008.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	160.75	129.94	100.82	205.79	133.89	103.69	153.15	169.35	85.56
Merged-chr17-15498270-3	chr17	15497777	15498777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011185)	promoter-TSS (NM_011185)	-1.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	151.02	195.83	180.37	133.59	167.01	147.09	207.01	192.78	161.13
Merged-chr10-81221573-3	chr10	81221075	81222075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178662, intron 2 of 12)	intron (NM_178662, intron 2 of 12)	9204.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	18.88	12.9	11.1	20.92	16.79	22.51	14.79	14.15	18.74
Merged-chr5-114823367-2	chr5	114822879	114823879	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	89.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	17.16	13.82	16.65	24.29	13.06	24.11	25.35	35.37	11.24
Merged-chr17-71256984-1	chr17	71256484	71257484	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	intron (NM_001357338, intron 4 of 7)	52330.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	90.38	76.95	41.62	186.9	139.02	117.35	4.22	7.96	6.25
Merged-chr13-68582144-3	chr13	68581690	68582690	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131892)	promoter-TSS (NR_131892)	-20.0	NR_138477	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	63.5	64.97	59.2	58.7	73.71	62.7	81.33	80.03	39.97
Merged-chr7-141228679-3	chr7	141228231	141229231	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-57.0	NM_001081118	101471.0	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	239.69	247.9	193.32	240.2	219.26	204.16	259.82	165.37	122.41
Merged-chr9-45272394-3	chr9	45271884	45272884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3235.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	80.66	55.75	61.97	73.54	64.38	77.97	64.43	55.27	41.84
Merged-chr19-10689145-3	chr19	10688680	10689680	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	CpG	445.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	576.63	487.05	374.61	406.18	358.74	316.69	351.71	314.38	219.83
Merged-chr17-87327156-3	chr17	87326652	87327652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 8 of 19)	intron (NM_028639, intron 8 of 19)	44266.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	8.58	10.14	0.0	12.82	8.86	6.43	10.56	6.19	9.99
Merged-chr9-78443229-3	chr9	78442741	78443741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173386)	promoter-TSS (NM_173386)	-4.0	NM_173386	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	109.26	97.69	93.42	101.88	95.17	92.44	133.08	119.83	68.07
Merged-chr1-16059930-3	chr1	16059444	16060444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33381.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	40.62	35.02	24.97	41.16	34.99	28.94	25.35	35.82	22.48
Merged-chr2-91196955-3	chr2	91196458	91197458	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1842.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	211.09	175.56	156.32	264.49	200.13	191.3	192.23	224.62	129.9
Merged-chr7-106529225-3	chr7	106528711	106529711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88138.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	57.21	69.12	38.85	59.38	43.39	40.19	74.99	72.07	59.95
Merged-chr11-83578534-3	chr11	83578054	83579054	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011338)	promoter-TSS (NM_011338)	82.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	118.42	89.39	92.5	125.5	68.11	142.27	84.49	53.94	69.32
Merged-chr10-82814262-3	chr10	82813764	82814764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2141.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	53.77	36.4	9.25	99.18	97.03	52.25	102.45	114.96	33.1
Merged-chr19-21106457-3	chr19	21105953	21106953	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126458)	TTS (NR_126458)	1743.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	13.16	16.59	4.62	46.56	29.86	26.53	24.29	11.05	18.11
Merged-chr11-70683731-3	chr11	70683217	70684217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178116, intron 5 of 22)	intron (NM_178116, intron 5 of 22)	4388.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	68.65	53.45	22.2	77.59	32.19	66.71	80.27	53.06	32.48
Merged-chr5-122762363-3	chr5	122761881	122762881	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 2 of 16)	PB1D9|SINE|Alu	17029.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	101.83	103.22	72.15	147.09	92.37	77.97	87.66	87.11	49.34
Merged-chr6-103649160-3	chr6	103648640	103649640	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007697, intron 4 of 26)	SYNREP_MM|Satellite|Satellite	138264.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	2197.83	5502.22	815.81	1994.47	4694.47	588.37	3191.79	3467.92	797.52
Merged-chr6-125426598-3	chr6	125426111	125427111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46107.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	98.39	99.53	60.12	129.55	89.1	81.18	135.19	134.86	63.08
Merged-chr4-16088560-3	chr4	16088070	16089070	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74682.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	72.65	92.62	37.92	81.64	61.11	68.32	78.16	104.35	58.08
Merged-chrUn_JH584304-20280-1	chrUn_JH584304	19780	20780	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39409.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	68.65	65.0	0.0
Merged-chr7-88202169-3	chr7	88201671	88202671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75914.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	29.17	25.34	18.5	32.39	20.53	21.7	25.35	22.11	27.48
Merged-chr2-39226387-3	chr2	39225873	39226873	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024209)	promoter-TSS (NM_024209)	-24.0	NM_024209	67857.0	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik|Pp6C	protein phosphatase 6, catalytic subunit	protein-coding	220.24	279.7	165.57	219.28	238.85	132.63	174.27	172.89	124.28
Merged-chr2-13271448-3	chr2	13270960	13271960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009105)	promoter-TSS (NM_009105)	-45.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	54.92	59.44	47.17	73.54	58.31	61.09	70.76	78.71	47.46
Merged-chr2-165405235-3	chr2	165404738	165405738	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054055)	TTS (NM_054055)	-4844.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	81.8	61.28	118.39	100.53	61.58	86.01	70.76	57.04	58.71
Merged-chr1-155091513-3	chr1	155091012	155092012	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8124.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	129.86	86.17	63.82	136.29	93.77	96.45	126.74	114.08	47.46
Merged-chr8-115707443-3	chr8	115706964	115707964	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-570.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	129.86	168.19	161.87	105.93	112.43	114.94	158.43	161.83	153.01
Merged-chr2-27716531-3	chr2	27716020	27717020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	5937.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	156.74	141.92	137.82	151.14	134.35	114.94	116.18	104.79	103.05
Merged-chr5-74195188-3	chr5	74194699	74195699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026878)	promoter-TSS (NM_026878)	-127.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	4.58	2.76	1.85	13.49	8.4	8.04	1.06	1.33	1.87
Merged-chr1-171129486-3	chr1	171128988	171129988	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025321, exon 6 of 6)	3' UTR (NM_025321, exon 6 of 6)	7827.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	151.59	105.52	64.75	132.92	66.71	102.08	94.0	72.52	51.84
Merged-chr12-106010204-3	chr12	106009712	106010712	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011705)	promoter-TSS (NM_011705)	-51.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	65.79	60.36	41.62	35.09	46.65	48.23	64.43	41.12	23.11
Merged-chr4-129035270-3	chr4	129034785	129035785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-22986.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	151.02	124.41	103.59	124.82	83.97	84.4	129.91	128.23	84.31
Merged-chr2-101678420-3	chr2	101677918	101678918	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009424)	promoter-TSS (NM_009424)	-2.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	114.98	123.95	71.22	133.59	117.56	111.73	129.91	108.33	58.71
Merged-chr12-84767688-3	chr12	84767199	84768199	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	5413.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	112.12	98.61	86.95	110.65	71.84	82.79	99.28	112.31	64.33
Merged-chr13-44730623-3	chr13	44730128	44731128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205044)	promoter-TSS (NM_001205044)	-146.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	242.55	158.05	141.52	193.64	109.63	153.52	192.23	146.36	89.93
Merged-chr2-154574374-1	chr2	154573874	154574874	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4482.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	1.72	1.38	15.72	5.4	0.93	6.43	15.84	7.07	3.75
Merged-chr5-122391837-3	chr5	122391355	122392355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019824)	promoter-TSS (NM_019824)	-23.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	298.04	347.89	256.21	322.51	290.17	275.7	290.45	351.08	166.12
Merged-chr1-177796684-3	chr1	177796153	177797153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007422)	promoter-TSS (NM_007422)	-144.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	104.11	82.48	87.87	93.79	89.57	86.81	115.12	86.66	63.7
Merged-chr2-69647184-3	chr2	69646682	69647682	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028284)	promoter-TSS (NM_028284)	-73.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	19.45	18.43	11.1	43.86	31.72	28.94	14.79	25.65	23.11
Merged-chr9-13246863-3	chr9	13246369	13247369	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025534)	promoter-TSS (NM_025534)	-87.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	29.75	23.04	33.3	29.69	27.99	35.37	30.63	20.78	24.36
Merged-chr7-75700905-3	chr7	75700418	75701418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-147420.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	121.85	157.13	74.92	114.03	89.57	81.18	117.24	118.06	76.19
Merged-chr6-106750506-3	chr6	106750013	106751013	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1476.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	8.58	6.91	1.85	10.8	6.53	4.82	9.51	8.4	2.5
Merged-chr3-88950244-5	chr3	88949815	88950815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022994)	promoter-TSS (NM_022994)	-33.0	NM_001164533	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	224.82	111.97	136.89	193.64	113.83	130.21	168.99	88.88	78.69
Merged-chr6-28482399-3	chr6	28481892	28482892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	2044.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	31.46	36.4	26.82	41.16	18.66	20.9	51.75	38.47	21.23
Merged-chr3-109129923-3	chr3	109129459	109130459	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	Lx8|LINE|L1	6810.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	17.73	15.21	12.02	8.1	14.0	14.47	27.46	12.82	6.25
Merged-chr19-9954662-3	chr19	9954138	9955138	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25962.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	161.89	145.15	125.79	219.28	211.79	185.68	198.56	226.39	119.28
Merged-chr3-110250852-5	chr3	110250308	110251308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	191.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	113.84	93.54	99.89	105.26	164.21	160.76	88.72	98.6	79.32
Merged-chr6-65585612-3	chr6	65585093	65586093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4805.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	16.59	13.82	14.8	12.14	17.26	14.47	15.84	9.29	2.5
Merged-chr2-167760169-3	chr2	167759664	167760664	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68987.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	235.11	165.42	161.87	224.68	151.62	200.14	201.73	174.21	119.91
Merged-chr2-116978371-3	chr2	116977843	116978843	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78191.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	102.97	88.47	88.8	94.46	49.45	76.36	98.23	94.62	55.58
Merged-chr2-167055818-3	chr2	167055327	167056327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7107.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	70.93	63.59	32.37	61.4	48.52	48.23	81.33	80.03	57.46
Merged-chr14-19977159-3	chr14	19976678	19977678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	71.0	NM_001038637	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	66.93	65.43	56.42	66.12	38.72	77.97	42.25	36.26	33.1
Merged-chr3-133583151-3	chr3	133582639	133583639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38749.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	113.84	126.25	78.62	126.17	92.37	47.42	118.29	133.53	56.21
Merged-chr3-98087729-3	chr3	98087251	98088251	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	-72883.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	25.74	23.04	15.72	26.99	17.73	26.53	28.52	26.97	22.48
Merged-chr10-81407733-3	chr10	81407193	81408193	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 5 of 8)	intron (NM_026756, intron 5 of 8)	-1882.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	161.32	102.29	65.67	207.14	162.34	102.88	134.14	126.46	72.45
Merged-chr10-123360658-1	chr10	123360158	123361158	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252387, intron 1 of 4)	intron (NM_001252387, intron 1 of 4)	96582.0	NM_001252387	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	1.72	1.84	0.0	6.07	20.06	9.65	0.0	2.65	0.0
Merged-chr14-122649606-3	chr14	122649117	122650117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	115289.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	69.22	59.44	38.85	70.85	66.24	57.87	117.24	128.23	51.84
Merged-chr17-56276917-3	chr17	56276413	56277413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-146.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	243.69	194.91	123.02	261.12	185.67	119.76	198.56	170.68	101.17
Merged-chr19-8757030-3	chr19	8756532	8757532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276704)	promoter-TSS (NM_001276704)	-63.0	NR_132424	102640359.0	Mm.440831	NR_132423		1700023D09Rik	AV208457	RIKEN cDNA 1700023D09 gene	ncRNA	307.76	259.88	221.06	193.64	191.27	204.16	197.51	148.13	141.77
Merged-chr17-34057439-2	chr17	34056940	34057940	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001317722, exon 36 of 65)	exon (NM_001317722, exon 36 of 65)	18302.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	54.92	28.11	17.57	2.02	1.87	3.22	78.16	81.36	34.97
Merged-chr6-128839060-3	chr6	128838598	128839598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12783.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	217.95	261.26	157.24	170.03	151.62	175.23	172.16	228.6	118.66
Merged-chr19-53274166-3	chr19	53273706	53274706	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19001.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	197.93	117.96	52.72	267.19	210.86	184.87	138.36	132.21	79.94
Merged-chr10-3740386-3	chr10	3739899	3740899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159942)	promoter-TSS (NM_001159942)	22.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	3.43	1.84	0.0	6.75	1.87	6.43	0.0	1.33	1.87
Merged-chr7-116603352-3	chr7	116602847	116603847	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	98978.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	29.75	34.56	16.65	43.86	42.92	46.62	22.18	26.97	26.23
Merged-chr3-122245524-5	chr3	122245018	122246018	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008129)	promoter-TSS (NM_008129)	-39.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	58.35	72.34	82.32	69.5	56.91	79.58	77.1	55.27	49.34
Merged-chr2-29004183-3	chr2	29003671	29004671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	50895.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	22.31	24.88	20.35	31.71	15.39	20.9	23.24	23.88	20.61
Merged-chr5-3152206-3	chr5	3151705	3152705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191688.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	21.74	19.35	0.0	16.19	17.73	7.23	7.39	5.75	8.74
Merged-chr9-49486151-3	chr9	49485641	49486641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172770)	promoter-TSS (NM_172770)	84.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	58.92	85.25	55.5	120.1	92.84	125.39	57.03	64.11	36.85
Merged-chr10-60252768-3	chr10	60252253	60253253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24875.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	133.86	71.88	88.8	128.2	76.97	86.01	137.3	87.99	66.82
Merged-chr19-29383578-3	chr19	29383076	29384076	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	16138.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	134.43	117.5	61.05	122.8	86.77	79.58	176.38	191.02	78.69
Merged-chr10-99130806-3	chr10	99130304	99131304	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	22669.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	6.86	11.98	7.4	26.31	14.93	9.65	15.84	14.59	5.62
Merged-chr12-85533233-3	chr12	85532727	85533727	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59337.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	552.03	446.96	221.99	498.62	357.35	276.5	342.2	472.68	207.34
Merged-chr19-55714151-3	chr19	55713636	55714636	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11932.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	57.78	41.47	33.3	64.1	45.72	62.7	34.85	23.88	16.24
Merged-chr9-59659557-3	chr9	59659064	59660064	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3196.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	47.48	53.45	46.25	57.35	54.58	84.4	62.31	65.44	39.35
Merged-chr11-51638091-3	chr11	51637597	51638597	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2201.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	28.03	19.81	12.02	22.94	19.59	24.11	21.12	15.48	19.36
Merged-chr2-135503809-3	chr2	135503289	135504289	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79431.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	13.16	21.2	11.1	18.22	14.46	5.63	6.34	9.73	15.61
Merged-chr11-63922422-3	chr11	63921922	63922922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018805)	promoter-TSS (NM_018805)	-138.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	19.45	24.42	16.65	3.37	0.93	1.61	30.63	18.57	20.61
Merged-chr11-101972925-2	chr11	101972437	101973437	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-5922.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	79.52	103.22	93.42	91.09	109.16	73.14	105.62	117.62	66.2
Merged-chr1-36511797-3	chr1	36511322	36512322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-45.0	NM_001331209	94218.0	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	28.03	21.66	11.1	41.83	26.12	45.82	26.4	19.9	19.98
Merged-chr3-146135105-3	chr3	146134612	146135612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134160, intron 8 of 11)	intron (NM_134160, intron 8 of 11)	13321.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	34.32	23.5	8.32	37.11	23.33	34.56	28.52	27.86	24.98
Merged-chr5-109796385-3	chr5	109795884	109796884	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37758.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	31.46	25.8	24.97	17.54	27.06	28.13	33.8	37.58	31.85
Merged-chr19-40873453-3	chr19	40872959	40873959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045343, intron 1 of 4)	CpG	5143.0	NR_045343	381223.0	Mm.136844	NR_045343		E030044B06Rik	E030007J07Rik|Gm1618	RIKEN cDNA E030044B06 gene	ncRNA	34.32	35.02	16.65	26.31	29.39	20.09	44.36	51.73	22.48
Merged-chr16-36747957-3	chr16	36747448	36748448	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37014.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	77.23	75.11	44.4	102.56	78.37	100.47	54.92	68.98	71.2
Merged-chr4-99194138-3	chr4	99193620	99194620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145967)	promoter-TSS (NM_001145967)	-27.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	273.44	323.01	224.76	313.74	319.09	277.31	416.14	414.31	164.88
Merged-chr7-19361200-3	chr7	19360702	19361702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-14.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	127.57	86.17	74.92	90.41	59.25	51.44	60.2	89.76	61.2
Merged-chr13-93303741-3	chr13	93303234	93304234	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284189)	promoter-TSS (NM_001284189)	-23.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	278.59	243.75	155.39	241.55	195.47	154.33	256.65	248.5	131.15
Merged-chr3-96294017-3	chr3	96293528	96294528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010186)	promoter-TSS (NM_010186)	-59.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	52.06	42.39	38.85	64.1	52.25	70.73	101.39	98.6	63.08
Merged-chr3-108890940-3	chr3	108890447	108891447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177091)	promoter-TSS (NM_177091)	-939.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	17.73	21.66	24.97	26.99	15.86	31.35	38.02	38.03	44.97
Merged-chr11-79254718-3	chr11	79254217	79255217	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019653)	promoter-TSS (NM_019653)	-22.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	326.07	240.99	152.62	303.62	194.07	189.69	188.0	240.1	151.14
Merged-chr11-76217587-3	chr11	76217075	76218075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177367)	promoter-TSS (NM_177367)	-3.0	NM_177367	276919.0	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	103.54	110.13	54.57	85.69	108.7	104.49	84.49	90.2	44.34
Merged-chrX-42150497-3	chrX	42149974	42150974	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021465)	promoter-TSS (NM_021465)	-227.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	137.86	124.41	147.07	118.75	91.44	122.98	151.03	118.94	133.65
Merged-chr7-44005090-3	chr7	44004568	44005568	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7610.0	NM_010644	16618.0	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	63.5	74.19	61.05	45.21	44.78	49.83	10.56	14.15	6.25
Merged-chr7-28050167-3	chr7	28049663	28050663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011874)	promoter-TSS (NM_011874)	-71.0	NM_011874	23996.0	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	101.83	121.65	102.67	62.75	78.84	82.79	70.76	84.9	73.07
Merged-chr13-5861276-3	chr13	5860796	5861796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011803)	promoter-TSS (NM_011803)	-193.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	347.24	298.59	214.59	379.19	356.41	247.57	318.97	403.26	156.76
Merged-chr8-105297676-3	chr8	105297224	105298224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148952)	promoter-TSS (NM_148952)	61.0	NM_148952	104394.0	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	49.2	44.24	41.62	51.28	47.12	77.16	66.54	54.39	49.96
Merged-chr16-32698751-3	chr16	32698249	32699249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25595.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	24.03	20.27	14.8	13.49	13.53	16.88	36.97	21.22	29.35
Merged-chr2-19004963-3	chr2	19004466	19005466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6647.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	52.06	83.4	66.6	51.95	40.59	53.05	47.53	49.08	40.59
Merged-chr18-61489723-3	chr18	61489225	61490225	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5118.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	81.23	48.38	38.85	97.83	55.05	73.95	79.21	62.79	41.22
Merged-chrX-14639570-3	chrX	14639066	14640066	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	428418.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	4.0	11.52	1.85	8.77	4.2	19.29	3.17	6.63	5.0
Merged-chr16-52031460-3	chr16	52030923	52031923	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033238)	promoter-TSS (NM_001033238)	-126.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	135.0	124.87	123.02	125.5	113.83	117.35	123.57	144.15	68.7
Merged-chr11-107028035-3	chr11	107027539	107028539	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163473)	promoter-TSS (NM_001163473)	-184.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	64.64	47.0	40.7	84.34	49.45	31.35	62.31	38.47	12.49
Merged-chr8-120668222-3	chr8	120667735	120668735	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293559)	promoter-TSS (NM_001293559)	10.0	NM_009941	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	351.81	283.84	225.69	313.74	271.51	241.94	303.13	263.97	174.87
Merged-chr11-34053606-3	chr11	34053032	34054032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	LTR103b_Mam|LTR|ERV1?	6604.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	127.57	113.35	110.99	95.14	68.11	73.14	105.62	121.15	84.31
Merged-chrX-56609794-3	chrX	56609307	56610307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358861)	promoter-TSS (NM_001358861)	26.0	NM_001358861	236794.0	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	24.6	18.89	12.95	23.62	18.19	25.72	14.79	17.24	16.86
Merged-chr5-24393593-3	chr5	24393114	24394114	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029020)	promoter-TSS (NM_029020)	-542.0	NM_029020	74610.0	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	132.72	143.3	100.82	155.86	110.1	116.55	194.34	176.42	84.31
Merged-chr18-35562652-3	chr18	35562148	35563148	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010771, intron 1 of 14)	CpG	490.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	362.11	351.12	339.46	321.84	319.09	312.67	259.82	263.53	231.08
Merged-chr9-75559599-3	chr9	75559048	75560048	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016963, exon 1 of 10)	5' UTR (NM_016963, exon 1 of 10)	109.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	152.74	172.79	167.42	143.71	139.95	146.29	143.64	155.64	115.54
Merged-chr8-73886134-1	chr8	73885634	73886634	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-532594.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.57	2.3	3.7	5.4	9.8	12.86	6.34	3.1	2.5
Merged-chr9-62828898-3	chr9	62828389	62829389	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9898.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	45.19	41.01	25.9	61.4	38.72	36.97	49.64	49.96	26.85
Merged-chr10-121476416-3	chr10	121475930	121476930	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-180.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	175.05	117.96	161.87	179.47	87.7	132.63	134.14	102.14	53.08
Merged-chr14-66231109-3	chr14	66230587	66231587	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-17263.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	200.22	135.01	116.54	160.58	114.76	120.57	119.35	126.9	77.44
Merged-chr10-99262423-1	chr10	99261923	99262923	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026268)	promoter-TSS (NM_026268)	-808.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	338.08	304.12	244.19	294.18	258.45	241.14	323.19	339.58	169.25
Merged-chr1-94079306-3	chr1	94078814	94079814	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26761.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	4.0	2.3	5.55	4.05	0.47	3.22	4.22	3.1	3.12
Merged-chr9-40814835-1	chr9	40814335	40815335	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	13562.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	15.45	17.05	3.7	11.47	9.8	1.61	91.89	123.36	47.46
Merged-chr7-63989913-3	chr7	63989418	63990418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-51003.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	26.31	19.35	16.65	8.1	12.6	5.63	17.96	5.75	8.12
Merged-chr2-30124570-3	chr2	30124060	30125060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290503)	promoter-TSS (NM_001290503)	51.0	NM_178694	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	181.91	127.64	127.64	168.0	125.49	122.18	153.15	144.15	83.06
Merged-chr8-35654436-3	chr8	35653954	35654954	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-65434.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	24.03	35.94	31.45	30.36	30.79	42.6	46.47	19.9	19.98
Merged-chr5-108629767-3	chr5	108629253	108630253	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282052)	promoter-TSS (NM_001282052)	24.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	328.36	336.37	263.61	337.36	311.16	264.45	297.84	276.35	202.35
Merged-chr10-89686294-3	chr10	89685810	89686810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130956)	promoter-TSS (NR_130956)	-16.0	NM_001310704	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	98.97	123.03	71.22	107.28	116.16	96.45	113.01	95.95	39.35
Merged-chr19-21053797-1	chr19	21053297	21054297	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50913.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	3.43	3.69	5.55	14.17	9.33	11.25	4.22	0.88	3.12
Merged-chr11-68431929-3	chr11	68431483	68432483	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177320)	promoter-TSS (NM_177320)	-142.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	112.69	127.18	118.39	124.82	98.43	180.05	122.52	114.52	81.81
Merged-chr10-59237889-3	chr10	59237391	59238391	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	15969.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	62.35	58.98	61.05	84.34	59.71	90.83	81.33	96.39	65.58
Merged-chr1-171329257-4	chr1	171328796	171329796	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357552)	promoter-TSS (NM_001357552)	151.0	NM_011615	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	395.86	287.99	235.86	393.36	241.18	232.29	402.41	357.71	144.89
Merged-chr2-122467866-3	chr2	122467354	122468354	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027919)	promoter-TSS (NR_027919)	-57.0	NR_027919	81913.0	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	15.45	14.28	14.8	33.06	25.66	25.72	30.63	20.78	5.62
Merged-chr12-84243303-3	chr12	84242807	84243807	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24426.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	34.32	14.28	11.1	19.57	33.12	6.43	14.79	12.38	12.49
Merged-chr18-36287577-3	chr18	36287061	36288061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008989, exon 2 of 2)	exon (NM_008989, exon 2 of 2)	6399.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	169.9	152.06	160.94	180.15	124.56	134.23	161.6	109.66	117.41
Merged-chr1-36939831-3	chr1	36939306	36940306	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-279.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	324.35	328.08	246.96	392.01	317.69	247.57	390.79	373.63	202.35
Merged-chr2-102815450-3	chr2	102815009	102816009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-68749.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	122.42	137.31	43.47	149.11	114.29	100.47	73.93	75.17	57.46
Merged-chr8-46336517-3	chr8	46336009	46337009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41838.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	56.06	100.45	85.1	53.98	54.58	57.07	106.67	127.34	54.33
Merged-chr3-126596283-3	chr3	126595779	126596779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293665)	promoter-TSS (NM_001293665)	-672.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	258.0	229.93	142.44	249.65	251.45	170.4	219.69	239.65	151.14
Merged-chr17-56884986-3	chr17	56884475	56885475	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 11 of 13)	intron (NM_030141, intron 11 of 13)	9342.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	32.61	19.81	7.4	24.96	11.66	12.86	45.42	20.78	9.37
Merged-chr19-4878623-3	chr19	4878134	4879134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013456)	promoter-TSS (NM_013456)	-34.0	NM_027476	70605.0	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	65.79	82.48	41.62	66.8	73.71	69.13	81.33	62.35	39.35
Merged-chr11-69998238-3	chr11	69997723	69998723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291125, intron 3 of 4)	intron (NM_001291125, intron 3 of 4)	761.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	93.24	77.41	96.2	91.76	49.45	61.89	92.94	122.48	59.95
Merged-chr2-120008841-3	chr2	120008327	120009327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-8690.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	36.61	24.42	18.5	41.16	15.86	24.92	23.24	17.69	12.49
Merged-chr9-108999280-3	chr9	108998763	108999763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	7361.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	85.24	77.87	109.14	87.71	55.51	112.53	98.23	106.12	62.45
Merged-chr13-67813978-4	chr13	67813482	67814482	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198322, intron 1 of 3)	CpG	166.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	78.37	98.61	92.5	63.42	80.71	97.26	143.64	186.15	85.56
Merged-chr11-51916780-3	chr11	51916302	51917302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50829.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	376.41	390.74	320.96	379.87	341.48	330.36	370.72	435.53	198.6
Merged-chr15-76313441-3	chr15	76312922	76313922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-6177.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	92.67	64.97	87.87	86.36	68.58	86.81	54.92	53.94	52.46
Merged-chr18-23805858-3	chr18	23805390	23806390	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1920.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	239.12	256.66	100.82	287.43	209.46	159.95	203.84	286.08	125.53
Merged-chr6-37419781-3	chr6	37419279	37420279	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	22369.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	70.36	98.61	82.32	76.92	87.24	90.83	98.23	123.81	56.83
Merged-chr6-98332898-3	chr6	98332372	98333372	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	9882.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	9.72	18.43	9.25	16.87	14.93	6.43	24.29	25.2	9.99
Merged-chr18-39021038-3	chr18	39020542	39021542	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	27897.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.01	7.37	3.7	4.05	5.6	14.47	5.28	10.61	11.24
Merged-chr12-79744334-3	chr12	79743845	79744845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	180388.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	12.59	12.44	9.25	18.22	5.6	9.65	7.39	4.42	5.0
Merged-chr9-40733747-1	chr9	40733247	40734247	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	47783.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	21.74	17.51	18.5	39.81	25.19	40.99	2.11	0.44	3.75
Merged-chr6-113377897-4	chr6	113377449	113378449	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133932)	promoter-TSS (NM_133932)	-164.0	NM_026552	68089.0	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	354.1	312.41	309.86	272.59	283.64	292.58	373.89	337.82	266.67
Merged-chr14-55724569-3	chr14	55724093	55725093	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2330.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	98.39	101.83	61.97	87.71	56.91	70.73	89.78	99.93	49.96
Merged-chr8-14090440-3	chr8	14089939	14090939	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034862)	promoter-TSS (NM_001034862)	-112.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	27.46	22.12	11.1	28.34	17.73	14.47	31.69	20.34	21.23
Merged-chr6-29526820-6	chr6	29526327	29527327	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311083, intron 1 of 9)	CpG	202.0	NM_012057	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	431.9	358.49	352.41	354.23	234.65	306.24	341.15	352.41	211.09
Merged-chr11-69980690-3	chr11	69980200	69981200	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026017)	promoter-TSS (NM_026017)	-370.0	NM_001253700	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	373.55	223.02	211.81	282.03	161.88	242.74	290.45	229.48	147.39
Merged-chr19-3928138-3	chr19	3927637	3928637	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	1579.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	84.09	67.74	63.82	80.97	52.25	102.08	91.89	115.85	53.08
Merged-chr11-96916151-2	chr11	96915649	96916649	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030248, intron 2 of 13)	CpG	365.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	184.2	146.53	101.74	162.61	98.9	106.1	126.74	132.65	71.2
Merged-chr10-41605093-3	chr10	41604594	41605594	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358562, exon 29 of 48)	exon (NM_001358562, exon 29 of 48)	37078.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	69.79	67.74	53.65	56.0	26.12	33.76	57.03	65.44	48.09
Merged-chrM-6259-2	chrM	5759	6759	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr		Intergenic											195.64	131.32	16.65	109.3	26.12	34.56	77.1	22.11	15.61
Merged-chr8-119792055-3	chr8	119791540	119792540	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13624.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	36.04	31.33	32.37	25.64	26.59	41.8	34.85	20.34	36.22
Merged-chr10-19942117-3	chr10	19941624	19942624	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	7598.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	111.55	84.78	58.27	112.68	66.71	79.58	49.64	49.08	66.2
Merged-chr1-165766706-3	chr1	165766223	165767223	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	2965.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	372.41	373.7	197.02	419.67	402.6	236.31	311.57	450.13	194.23
Merged-chr1-131866559-3	chr1	131866045	131867045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144875)	promoter-TSS (NM_144875)	-732.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	153.88	204.13	86.02	190.27	155.81	68.32	123.57	155.2	74.94
Merged-chr9-107888077-3	chr9	107887589	107888589	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028369)	promoter-TSS (NM_028369)	-40.0	NM_028369	72825.0	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	28.6	35.94	60.12	35.76	36.39	60.28	39.08	29.63	18.74
Merged-chr9-65561147-3	chr9	65560631	65561631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 3 of 5)	intron (NM_153119, intron 3 of 5)	18956.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	86.38	89.39	115.62	92.44	80.71	106.1	101.39	80.03	39.97
Merged-chr18-77713992-3	chr18	77713439	77714439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178670)	promoter-TSS (NM_178670)	71.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	213.38	160.81	153.54	210.51	155.81	155.93	154.2	90.2	99.92
Merged-chr1-34803914-2	chr1	34803419	34804419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183019, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	2197.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	4.0	1.84	11.1	10.12	5.13	11.25	9.51	2.65	7.49
Merged-chr17-36145269-2	chr17	36144770	36145770	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033517, intron 1 of 3)	CpG	252.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.57	4.61	1.85	25.64	20.53	12.86	36.97	17.24	5.62
Merged-chr8-69271014-3	chr8	69270514	69271514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172491)	promoter-TSS (NM_172491)	-66.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	32.04	36.86	46.25	56.68	45.25	51.44	41.19	53.94	27.48
Merged-chr1-60937512-3	chr1	60937006	60938006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1d|LTR|Gypsy	28481.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	14.3	6.91	3.7	14.17	5.13	6.43	12.67	4.42	5.0
Merged-chr8-22706599-3	chr8	22706139	22707139	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010546)	promoter-TSS (NM_010546)	-56.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	260.86	270.94	135.97	247.62	244.45	168.8	246.09	208.26	134.27
Merged-chr10-81433064-3	chr10	81432552	81433552	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5879.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	95.53	71.88	70.3	112.0	99.37	60.28	121.46	165.37	50.59
Merged-chr6-134035839-4	chr6	134035330	134036330	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007961, exon 1 of 8)	5' UTR (NM_007961, exon 1 of 8)	130.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	528.58	462.63	327.43	431.82	374.14	319.1	374.95	409.89	239.82
Merged-chr2-59207822-3	chr2	59207297	59208297	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46947.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	103.54	85.25	65.67	103.91	71.38	57.87	90.83	94.18	39.97
Merged-chr10-53925612-3	chr10	53925115	53926115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 8 of 12)	intron (NM_008548, intron 8 of 12)	150181.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	46.91	48.84	24.97	64.1	34.52	36.17	14.79	27.86	14.36
Merged-chr8-70042786-3	chr8	70042280	70043280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167939)	promoter-TSS (NM_001167939)	-33.0	NM_027481	70616.0	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	183.63	176.94	144.29	106.61	142.29	119.76	196.45	163.6	96.18
Merged-chrX-106186995-3	chrX	106186488	106187488	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008828)	promoter-TSS (NM_008828)	-112.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	107.55	111.05	77.7	93.79	99.37	81.99	107.73	115.41	61.83
Merged-chr19-17166557-3	chr19	17166081	17167081	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	ORR1F|LTR|ERVL-MaLR	172924.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	131.0	133.63	134.12	112.0	84.44	93.24	121.46	128.67	82.44
Merged-chr11-61728224-3	chr11	61727725	61728725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7426.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	51.48	47.0	48.1	58.7	49.92	41.8	51.75	93.74	69.95
Merged-chr19-3537895-3	chr19	3537407	3538407	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164159, intron 1 of 21)	intron (NM_001164159, intron 1 of 21)	37842.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	75.51	62.67	37.92	43.18	32.19	39.39	20.07	32.28	37.47
Merged-chr11-111089069-2	chr11	111088573	111089573	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22909.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	20.59	20.74	9.25	3.37	1.4	0.0	35.91	17.24	9.37
Merged-chr1-180250244-3	chr1	180249739	180250739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-4289.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	36.61	31.79	32.37	35.09	20.99	22.51	26.4	20.78	11.87
Merged-chr7-97123551-3	chr7	97123057	97124057	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	41806.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	108.69	111.97	59.2	90.41	79.77	83.59	129.91	136.19	85.56
Merged-chr1-128592338-3	chr1	128591868	128592868	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-69.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	38.9	60.82	24.97	82.99	76.51	77.16	22.18	20.78	16.24
Merged-chr2-30545257-3	chr2	30544758	30545758	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-49786.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	8.01	3.69	3.7	4.05	2.33	1.61	4.22	1.77	0.0
Merged-chr5-53188820-3	chr5	53188313	53189313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	24639.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	19.45	15.21	16.65	20.24	25.66	16.08	11.62	11.5	22.48
Merged-chr7-63897023-3	chr7	63896528	63897528	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	CpG	-19829.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	101.25	88.47	80.47	99.18	74.64	85.2	126.74	95.07	82.44
Merged-chr10-91083538-1	chr10	91083038	91084038	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009684)	promoter-TSS (NM_009684)	499.0	NM_026166	67454.0	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	40.62	35.02	35.15	50.6	57.85	44.21	47.53	50.85	21.86
Merged-chr1-84935901-3	chr1	84935394	84936394	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	-811.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.86	5.99	0.0	2.02	6.06	3.22	3.17	3.98	5.0
Merged-chr2-155382191-3	chr2	155381698	155382698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	CpG	342.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	560.61	470.92	331.13	573.51	454.85	322.32	361.22	517.34	215.46
Merged-chr4-149170807-3	chr4	149170328	149171328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4123.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	70.36	89.85	82.32	85.69	95.17	150.31	82.38	124.25	98.68
Merged-chr8-69974411-3	chr8	69973901	69974901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113346)	promoter-TSS (NM_001113346)	-18.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	57.21	41.93	40.7	53.98	37.32	49.03	41.19	38.91	22.48
Merged-chr12-83632171-3	chr12	83631674	83632674	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-60.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	250.56	296.75	244.19	203.09	288.3	192.91	239.75	282.1	163.0
Merged-chr11-62648751-3	chr11	62648254	62649254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198861)	promoter-TSS (NM_198861)	90.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	22.31	18.43	35.15	27.66	13.06	26.53	30.63	28.3	16.86
Merged-chr16-45657777-1	chr16	45657277	45658277	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172455, intron 17 of 17)	intron (NM_172455, intron 17 of 17)	-3659.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	8.01	5.07	7.4	4.05	3.73	9.65	8.45	9.29	12.49
Merged-chr11-32331258-3	chr11	32330808	32331808	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16503.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	33.18	23.04	25.9	16.19	9.8	16.08	8.45	3.1	8.12
Merged-chr15-103250336-3	chr15	103249839	103250839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302338, intron 2 of 2)	intron (NM_001302338, intron 2 of 2)	1337.0	NM_001302338	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	10.87	13.82	7.4	24.96	8.86	8.04	24.29	22.55	10.62
Merged-chr5-28259612-3	chr5	28259117	28260117	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-13829.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	23.45	29.95	38.85	22.27	14.0	28.13	21.12	7.52	19.98
Merged-chr8-120720045-3	chr8	120719553	120720553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16305.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	157.31	116.12	98.05	167.33	103.56	98.87	127.8	127.34	51.21
Merged-chr2-6179926-3	chr2	6179418	6180418	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13333.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	10.87	4.15	1.85	10.8	7.0	10.45	10.56	5.31	3.75
Merged-chr10-16652592-3	chr10	16652091	16653091	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	443191.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	24.03	24.88	23.12	21.59	16.79	33.76	47.53	36.26	48.71
Merged-chr19-21180043-3	chr19	21179520	21180520	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	75310.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	10.87	5.99	5.55	6.07	4.67	8.04	6.34	3.1	7.49
Merged-chr15-100204775-3	chr15	100204275	100205275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 27 of 32)	intron (NM_172819, intron 27 of 32)	-16739.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	108.12	110.13	73.07	143.71	129.22	110.92	109.84	127.34	74.94
Merged-chr14-57999199-3	chr14	57998684	57999684	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028643)	promoter-TSS (NM_028643)	78.0	NM_028643	68514.0	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	72.65	29.03	15.72	44.53	36.85	32.15	59.15	26.97	20.61
Merged-chr4-134920340-3	chr4	134919849	134920849	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3276.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	121.85	161.27	119.32	114.7	90.97	103.69	101.39	177.31	92.43
Merged-chr15-88751493-3	chr15	88750987	88751987	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-224.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	227.11	144.23	125.79	234.8	156.28	118.96	224.97	141.05	94.3
Merged-chr1-55049244-3	chr1	55048756	55049756	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3514.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	16.02	21.2	13.87	12.82	9.33	15.27	16.9	14.15	11.24
Merged-chr17-63931768-3	chr17	63931265	63932265	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 7 of 18)	Lx10|LINE|L1	-6207.0	NM_008000	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	18.88	7.83	14.8	4.05	6.53	12.06	12.67	11.94	14.99
Merged-chr7-43637296-3	chr7	43636763	43637763	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 2 of 5)	intron (NM_028236, intron 2 of 5)	2524.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	73.22	60.82	30.52	58.7	19.59	44.21	62.31	50.85	38.1
Merged-chr9-106230500-3	chr9	106230047	106231047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7949.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	147.59	127.64	87.87	124.15	89.57	95.65	146.81	149.89	76.19
Merged-chr7-45091271-1	chr7	45090771	45091771	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355045, intron 2 of 6)	intron (NM_001355045, intron 2 of 6)	942.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	31.46	10.14	11.1	32.39	28.46	26.53	5.28	2.65	1.87
Merged-chr17-5260030-3	chr17	5259537	5260537	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 5 of 19)	L1MD3|LINE|L1	158730.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	24.03	23.96	20.35	29.69	21.93	14.47	53.87	42.45	18.74
Merged-chr4-108347229-3	chr4	108346731	108347731	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19079.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	46.34	45.16	18.5	50.6	41.99	34.56	61.26	75.61	24.98
Merged-chr5-140607248-3	chr5	140606764	140607764	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008494)	promoter-TSS (NM_008494)	-77.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	85.81	68.2	86.02	87.71	76.04	96.45	111.96	74.28	38.72
Merged-chr8-123248773-3	chr8	123248270	123249270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310661, exon 5 of 15)	exon (NM_001310661, exon 5 of 15)	-5425.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	32.61	23.96	24.97	33.06	16.33	36.17	20.07	27.41	28.1
Merged-chr1-51493731-1	chr1	51493231	51494231	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15332.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	43.48	70.5	67.52	48.58	42.45	44.21	51.75	65.0	50.59
Merged-chr10-5191761-3	chr10	5191267	5192267	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079686, intron 2 of 54)	intron (NM_001079686, intron 2 of 54)	2940.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	54.92	61.75	37.92	71.52	73.71	36.17	51.75	64.56	39.97
Merged-chr1-36947661-3	chr1	36947169	36948169	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8142.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	168.18	111.05	92.5	126.85	96.57	58.68	115.12	88.43	56.83
Merged-chr2-38368968-1	chr2	38368468	38369468	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010710, exon 5 of 5)	exon (NM_010710, exon 5 of 5)	17660.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	3.43	3.23	1.85	2.02	1.4	4.82	3.17	0.0	0.0
Merged-chr4-62287101-3	chr4	62286602	62287602	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	673.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	109.83	130.86	186.84	104.58	107.3	127.0	204.9	196.76	118.04
Merged-chr7-83659601-3	chr7	83659115	83660115	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 12 of 18)	intron (NM_001360088, intron 12 of 18)	-4120.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	229.97	176.02	147.99	150.46	118.03	135.04	139.42	130.88	111.79
Merged-chr9-107612327-3	chr9	107611818	107612818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3077.0	NM_001291539	20347.0	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	550.89	403.65	307.08	533.03	398.4	379.39	362.27	353.29	211.09
Merged-chr13-38635109-3	chr13	38634617	38635617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-8.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	52.63	66.81	39.77	43.86	41.99	55.46	55.98	45.1	22.48
Merged-chr6-120836656-1	chr6	120836156	120837156	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153516, intron 1 of 6)	intron (NM_153516, intron 1 of 6)	426.0	NM_153516	94044.0	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	321.49	297.67	184.07	275.96	308.36	162.37	308.41	262.21	145.51
Merged-chr1-92473847-3	chr1	92473335	92474335	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024197)	promoter-TSS (NM_024197)	-77.0	NM_024197	67273.0	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	237.4	238.23	180.37	178.8	229.06	178.44	215.46	232.14	139.89
Merged-chr1-180973884-3	chr1	180973380	180974380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144794, intron 22 of 22)	(CAGA)n|Simple_repeat|Simple_repeat	31362.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	60.64	55.29	53.65	51.28	41.05	68.32	59.15	54.83	50.59
Merged-chr2-117120729-6	chr2	117120197	117121197	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033524)	promoter-TSS (NM_033524)	-374.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	210.52	161.27	174.82	238.18	140.42	208.18	201.73	162.28	150.51
Merged-chr17-87301764-3	chr17	87301241	87302241	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	L1MB2|LINE|L1	18855.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	97.82	69.12	45.32	66.12	50.85	72.34	73.93	66.77	32.48
Merged-chr15-39112816-3	chr15	39112328	39113328	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172402)	promoter-TSS (NM_172402)	-46.0	NM_198606	223499.0	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	210.52	181.55	190.54	174.08	185.2	202.55	188.0	208.7	119.28
Merged-chr16-57550317-3	chr16	57549803	57550803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1061.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	231.11	253.43	68.45	241.55	200.6	115.75	189.06	210.91	92.43
Merged-chr5-32745887-3	chr5	32745401	32746401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347332, intron 1 of 8)	intron (NM_001347332, intron 1 of 8)	441.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	116.13	99.99	126.72	118.08	86.3	127.0	107.73	123.36	94.93
Merged-chrX-121331491-1	chrX	121330991	121331991	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-1018265.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	12.59	25.8	8.32	26.31	19.13	40.99	2.11	0.44	2.5
Merged-chr11-79623313-3	chr11	79622840	79623840	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-177.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	285.45	277.85	96.2	323.86	318.16	163.97	250.32	343.12	118.04
Merged-chr19-4169542-3	chr19	4169043	4170043	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134148, exon 9 of 10)	exon (NM_134148, exon 9 of 10)	5936.0	NM_134148	107239.0	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	95.53	94.46	74.92	80.97	74.17	85.2	52.81	78.71	46.22
Merged-chr4-89311047-3	chr4	89310554	89311554	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007670)	promoter-TSS (NM_007670)	-22.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	32.04	40.09	22.2	51.28	50.38	46.62	25.35	30.95	17.49
Merged-chr7-44360110-3	chr7	44359622	44360622	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027049)	TTS (NM_027049)	14908.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	45.76	35.48	31.45	41.83	21.93	32.15	35.91	30.07	19.36
Merged-chr8-70769118-3	chr8	70768613	70769613	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008841, exon 15 of 16)	exon (NM_008841, exon 15 of 16)	-2450.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	337.51	230.85	159.09	332.64	205.26	184.87	318.97	395.3	217.96
Merged-chr2-152080897-3	chr2	152080349	152081349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160410)	promoter-TSS (NM_001160410)	-680.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	2.29	3.23	1.85	10.8	2.33	1.61	3.17	3.1	2.5
Merged-chr13-60650138-3	chr13	60649621	60650621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	47910.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	55.49	54.83	41.62	45.88	50.85	69.93	34.85	39.35	36.22
Merged-chr12-78980879-3	chr12	78980373	78981373	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	intron (NM_178745, intron 1 of 2)	2605.0	NM_001170401	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	129.28	147.91	149.84	155.86	133.89	126.19	173.21	179.52	113.04
Merged-chr1-156719131-3	chr1	156718638	156719638	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-228.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	36.04	28.57	24.97	41.83	22.86	37.78	46.47	32.28	19.98
Merged-chr10-67284881-3	chr10	67284401	67285401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036293, intron 1 of 3)	CpG	380.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	266.0	254.35	206.26	241.55	254.71	182.46	255.6	263.53	141.77
Merged-chrX-168779320-3	chrX	168778815	168779815	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15784.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	3.43	11.06	8.32	8.1	7.93	8.04	9.51	7.07	1.25
Merged-chr16-11144131-3	chr16	11143639	11144639	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9607.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	73.22	48.38	101.74	39.81	16.79	45.01	32.74	13.71	58.08
Merged-chr10-71369626-3	chr10	71369111	71370111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 3 of 5)	intron (NM_027184, intron 3 of 5)	21848.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	37.76	34.56	21.27	58.7	60.18	56.27	48.58	45.1	14.99
Merged-chr7-138919729-3	chr7	138919224	138920224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10218.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	26.31	22.12	5.55	29.69	28.46	36.17	15.84	11.05	6.25
Merged-chr1-55131151-3	chr1	55130671	55131671	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025283)	promoter-TSS (NM_025283)	-74.0	NM_001310585	19070.0	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	251.7	261.73	157.24	245.6	206.66	163.17	184.83	168.91	136.77
Merged-chr3-90254209-3	chr3	90253698	90254698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013901)	TTS (NM_013901)	340.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	175.62	148.83	116.54	184.2	165.61	153.52	186.94	145.47	96.8
Merged-chrX-163908368-3	chrX	163907889	163908889	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026887)	promoter-TSS (NM_026887)	-628.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	29.17	28.11	37.92	30.36	40.12	58.68	38.02	59.69	44.97
Merged-chr17-88042616-3	chr17	88042112	88043112	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	22320.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	81.8	46.08	59.2	80.29	71.84	37.78	90.83	79.59	41.22
Merged-chr11-69100034-3	chr11	69099532	69100532	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159367)	promoter-TSS (NM_001159367)	-120.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	256.28	139.62	131.34	233.45	151.62	94.04	173.21	201.19	66.82
Merged-chr12-54656623-3	chr12	54656111	54657111	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134054)	promoter-TSS (NM_134054)	-39.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	111.55	100.45	114.69	113.35	102.63	122.18	142.59	115.41	74.32
Merged-chr12-38779197-1	chr12	38778697	38779697	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007960)	promoter-TSS (NM_007960)	-885.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	192.78	206.89	129.49	155.19	137.15	118.96	172.16	169.79	98.68
Merged-chr2-119897531-1	chr2	119897031	119898031	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013720, intron 1 of 23)	CpG	303.0	NM_013720	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	298.61	302.74	193.32	286.08	268.24	155.13	233.42	321.46	159.25
Merged-chr6-114362587-3	chr6	114362075	114363075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-35361.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	53.77	40.55	22.2	53.98	36.39	31.35	36.97	34.49	21.23
Merged-chr9-114401177-4	chr9	114400711	114401711	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009752, exon 1 of 16)	exon (NM_009752, exon 1 of 16)	116.0	NM_001200002	100504715.0	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	117.84	126.72	98.05	172.73	214.59	229.08	186.94	175.98	113.66
Merged-chr3-9005713-3	chr3	9005205	9006205	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025263)	promoter-TSS (NM_001025263)	-982.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	125.28	106.44	87.87	133.59	108.7	110.12	109.84	134.42	94.93
Merged-chr16-20611620-3	chr16	20611118	20612118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	17.0	NM_025462	110599566.0	Mm.263319	NM_025462		Eef1akmt4	-	eukaryotic translation elongation factor 1 alpha lysine specific methyltransferase 4	protein-coding	92.67	106.44	87.87	120.77	111.03	125.39	151.03	160.95	69.32
Merged-chr6-119918861-3	chr6	119918353	119919353	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149727, intron 7 of 10)	intron (NR_149727, intron 7 of 10)	16155.0	NM_001166383	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	28.03	12.9	18.5	22.94	13.06	36.97	21.12	18.13	11.24
Merged-chr10-80167670-3	chr10	80167155	80168155	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-184.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	208.23	128.1	133.19	259.77	138.09	154.33	147.87	134.86	78.07
Merged-chr11-103133100-3	chr11	103132591	103133591	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027658)	promoter-TSS (NM_027658)	-248.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	209.94	214.73	205.34	226.71	240.72	188.89	233.42	197.65	119.28
Merged-chr15-100081323-3	chr15	100080823	100081823	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	intron (NR_037311, intron 3 of 3)	42659.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	208.23	174.64	110.07	170.03	141.82	135.04	167.93	164.93	73.07
Merged-chr1-77488110-1	chr1	77487610	77488610	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	8658.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	4.58	5.53	5.55	8.1	3.73	5.63	7.39	3.98	3.75
Merged-chr2-51149178-3	chr2	51148678	51149678	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028810)	promoter-TSS (NM_028810)	-67.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	44.62	52.07	33.3	24.96	29.39	17.68	14.79	19.46	24.36
Merged-chr1-13372723-4	chr1	13372257	13373257	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302702)	promoter-TSS (NM_001302702)	-328.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	209.94	174.18	197.94	182.17	109.63	154.33	219.69	156.53	155.51
Merged-chr14-103719046-3	chr14	103718541	103719541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19609.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	58.92	53.45	24.05	99.86	104.5	57.07	45.42	40.68	18.11
Merged-chr5-121384070-3	chr5	121383563	121384563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163470, exon 2 of 12)	exon (NM_001163470, exon 2 of 12)	1346.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	253.99	255.74	133.19	251.67	226.26	145.49	264.05	339.58	131.15
Merged-chr2-154603885-3	chr2	154603413	154604413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021534)	promoter-TSS (NM_021534)	-240.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	196.21	208.74	123.02	417.65	391.4	303.83	181.66	198.98	83.69
Merged-chr6-136519070-3	chr6	136518562	136519562	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	CpG	211.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	204.8	299.05	128.57	239.52	245.38	155.93	239.75	267.07	136.77
Merged-chr5-64156379-3	chr5	64155891	64156891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3869.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.3	4.15	7.4	6.75	4.2	3.22	5.28	7.07	9.37
Merged-chr17-28622511-3	chr17	28622007	28623007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016795)	promoter-TSS (NM_016795)	14.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	39.47	32.25	34.22	46.56	27.52	44.21	49.64	30.07	31.23
Merged-chr5-76951433-6	chr5	76950949	76951949	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356971, exon 1 of 10)	5' UTR (NM_001356971, exon 1 of 10)	129.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	81.23	75.11	90.65	69.5	71.84	108.51	114.07	90.64	63.08
Merged-chr9-108649911-3	chr9	108649408	108650408	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011790)	promoter-TSS (NM_011790)	-500.0	NM_001357286	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	241.41	231.31	182.22	225.36	236.99	201.75	196.45	242.75	146.14
Merged-chr3-105816277-3	chr3	105815779	105816779	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045845, intron 2 of 2)	intron (NR_045845, intron 2 of 2)	712.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	181.91	95.38	40.7	134.94	80.71	29.74	116.18	117.17	46.84
Merged-chr18-80206747-3	chr18	80206229	80207229	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178604)	promoter-TSS (NM_178604)	-69.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	387.85	357.11	256.21	333.99	392.33	308.65	250.32	291.39	192.98
Merged-chr9-110333316-3	chr9	110332803	110333803	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103162)	promoter-TSS (NM_001103162)	15.0	NM_001103162	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	29.75	15.21	5.55	26.99	10.73	24.11	33.8	19.9	6.87
Merged-chr5-21024753-1	chr5	21024253	21025253	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356591, intron 1 of 16)	intron (NM_001356591, intron 1 of 16)	10494.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	25.74	33.64	25.9	34.41	25.66	35.37	44.36	33.16	38.1
Merged-chr1-55215632-3	chr1	55215135	55216135	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	11147.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	25.17	12.44	26.82	32.39	30.32	40.99	47.53	26.97	34.97
Merged-chr19-55253963-3	chr19	55253466	55254466	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027976, exon 1 of 22)	5' UTR (NM_027976, exon 1 of 22)	597.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	319.78	346.97	284.89	311.04	338.69	274.9	340.09	380.71	182.36
Merged-chr11-61855082-3	chr11	61854595	61855595	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013881)	promoter-TSS (NM_013881)	-3.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	172.19	120.73	129.49	181.5	98.43	162.37	180.61	146.36	122.41
Merged-chr15-5495640-3	chr15	5495145	5496145	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-673.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	58.92	86.17	73.07	76.24	75.11	97.26	84.49	84.45	53.08
Merged-chr13-23756957-3	chr13	23756490	23757490	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178193)	promoter-TSS (NM_178193)	53.0	NM_178193	326620.0	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	81.23	62.21	74.0	53.98	51.32	106.1	71.82	63.67	104.92
Merged-chr6-29164762-3	chr6	29164254	29165254	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133925)	promoter-TSS (NM_133925)	-30.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	64.07	42.39	28.67	89.06	71.38	45.82	52.81	50.85	23.73
Merged-chr7-19228774-3	chr7	19228269	19229269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	CpG	380.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	399.29	373.7	298.76	405.51	331.69	247.57	333.75	443.05	181.11
Merged-chr2-164832943-3	chr2	164832461	164833461	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008906)	promoter-TSS (NM_008906)	89.0	NM_001038492	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	126.42	130.4	86.02	176.1	208.53	150.31	188.0	240.1	97.43
Merged-chr6-123123306-3	chr6	123122790	123123790	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	-26.0	NM_011999	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	64.07	70.96	61.97	62.07	48.05	75.56	47.53	54.83	51.84
Merged-chr9-7345675-3	chr9	7345184	7346184	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320077, intron 1 of 10)	intron (NM_001320077, intron 1 of 10)	1287.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	54.92	71.88	56.42	68.82	71.38	80.38	36.97	47.31	53.71
Merged-chr15-10583577-1	chr15	10583077	10584077	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356534, intron 12 of 16)	intron (NM_001356534, intron 12 of 16)	-16716.0	NR_033541	100038608.0	Mm.450744	NR_033541	ENSMUSG00000115667	Gm10389	-	predicted gene 10389	ncRNA	0.0	3.23	5.55	3.37	0.93	1.61	1.06	3.54	1.25
Merged-chr8-35430732-3	chr8	35430252	35431252	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55011.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	15.45	12.44	3.7	18.89	11.2	17.68	12.67	10.17	11.87
Merged-chr10-128526061-3	chr10	128525550	128526550	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-191.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	270.01	205.05	179.44	249.65	236.52	201.75	254.54	291.83	141.77
Merged-chr11-107473310-3	chr11	107472834	107473834	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2614.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	29.17	23.5	16.65	26.99	16.33	12.06	26.4	26.53	14.99
Merged-chr7-127842513-3	chr7	127842020	127843020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009294, exon 3 of 11)	exon (NM_009294, exon 3 of 11)	712.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	169.33	177.4	151.69	292.83	244.45	231.49	272.5	416.96	143.02
Merged-chr7-143685872-3	chr7	143685370	143686370	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	5.0	NM_001308111	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	72.65	106.44	42.55	76.24	69.98	88.42	64.43	71.63	66.2
Merged-chr13-20313633-3	chr13	20313190	20314190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-159300.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	88.1	102.75	65.67	72.87	55.98	69.13	45.42	42.89	57.46
Merged-chr14-8098215-3	chr14	8097702	8098702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178279)	promoter-TSS (NM_178279)	-9.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	127.0	77.41	78.62	145.74	91.44	70.73	138.36	65.88	86.18
Merged-chr14-120477591-3	chr14	120477088	120478088	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-873.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	253.99	249.28	177.59	246.95	231.39	192.91	234.47	291.39	129.28
Merged-chr15-81074694-3	chr15	81074186	81075186	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	30361.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	65.21	48.38	61.05	76.24	44.78	60.28	67.6	40.68	51.21
Merged-chr5-113908192-3	chr5	113907739	113908739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	CpG	467.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	171.04	161.74	164.64	232.78	173.07	195.32	213.35	156.53	157.38
Merged-chr4-55514902-3	chr4	55514409	55515409	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	17566.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.86	8.75	3.7	12.14	5.13	8.04	9.51	4.42	2.5
Merged-chr5-137624221-3	chr5	137623717	137624717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027708, intron 3 of 9)	intron (NM_027708, intron 3 of 9)	861.0	NM_027708	71176.0	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	33.75	40.09	35.15	50.6	27.06	62.7	42.25	40.68	31.85
Merged-chr19-12472102-3	chr19	12471616	12472616	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 8 of 8)	intron (NM_172442, intron 8 of 8)	11337.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	97.25	92.62	74.92	125.5	99.37	109.32	73.93	66.33	72.45
Merged-chr1-36570155-3	chr1	36569633	36570633	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11752.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	146.45	118.88	170.19	131.57	80.24	143.88	133.08	156.09	108.67
Merged-chr1-194977012-1	chr1	194976512	194977512	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-53.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	101.25	106.44	109.14	128.87	141.35	106.1	113.01	105.24	84.94
Merged-chr3-69154905-3	chr3	69154393	69155393	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	intron (NR_126533, intron 2 of 2)	23660.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	40.04	31.33	22.2	53.98	38.25	31.35	76.05	61.46	40.59
Merged-chr1-84562045-3	chr1	84561561	84562561	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	intron (NM_152915, intron 4 of 12)	-133778.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	79.52	83.4	40.7	79.62	97.03	87.61	87.66	67.65	62.45
Merged-chr11-69758660-3	chr11	69758165	69759165	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-32.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	249.42	165.42	133.19	246.27	146.02	142.27	189.06	203.84	89.93
Merged-chr12-87413470-3	chr12	87412968	87413968	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24289.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	20.02	23.5	6.47	15.52	16.79	12.86	27.46	22.55	15.61
Merged-chr8-61517930-3	chr8	61517428	61518428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	30194.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	16.59	10.14	10.17	51.28	41.99	36.17	28.52	30.07	19.36
Merged-chr3-127498362-1	chr3	127497862	127498862	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	753.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.86	0.0	6.47	4.05	2.33	4.82	104.56	90.2	33.72
Merged-chr14-46999871-3	chr14	46999366	47000366	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-1474.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	202.51	138.24	119.32	197.02	86.3	107.71	245.04	179.52	99.92
Merged-chr6-38918938-3	chr6	38918419	38919419	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011539)	promoter-TSS (NM_011539)	-67.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	187.06	200.9	87.87	245.6	176.81	108.51	146.81	173.33	74.32
Merged-chr7-128739713-3	chr7	128739213	128740213	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	716.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	167.04	143.76	171.12	147.09	101.23	143.07	123.57	106.56	90.56
Merged-chr14-62808838-3	chr14	62808340	62809340	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045503, intron 2 of 6)	LTR16A|LTR|ERVL	-28850.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	36.61	38.71	57.35	47.23	34.52	69.93	35.91	30.07	37.47
Merged-chr6-32512107-3	chr6	32511592	32512592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040277, intron 1 of 1)	intron (NR_040277, intron 1 of 1)	951.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	74.94	95.38	98.05	106.61	84.9	81.18	98.23	135.3	51.84
Merged-chr6-87743457-3	chr6	87742960	87743960	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	12591.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	74.37	35.02	25.9	77.59	34.52	8.84	43.3	37.58	11.24
Merged-chr8-45415189-3	chr8	45414717	45415717	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4598.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	43.48	47.92	44.4	43.18	32.19	34.56	32.74	35.37	37.47
Merged-chr6-124813710-3	chr6	124813202	124814202	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009415, intron 1 of 6)	intron (NM_009415, intron 1 of 6)	594.0	NM_009415	21991.0	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|TIM|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	79.52	56.22	79.55	80.29	39.65	75.56	83.44	86.66	65.58
Merged-chr7-80802823-1	chr7	80802323	80803323	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 1 of 37)	intron (NM_016721, intron 1 of 37)	508.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	274.59	241.45	216.44	288.1	242.12	210.59	228.14	260.88	170.5
Merged-chr12-105685338-3	chr12	105684839	105685839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	-13.0	NM_178613	66787.0	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	221.38	215.19	125.79	172.73	235.12	165.58	212.29	174.21	117.41
Merged-chr2-68242262-3	chr2	68241789	68242789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	137617.0	NM_020283	26877.0	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	7.44	4.15	8.32	12.82	3.73	9.65	4.22	3.1	7.49
Merged-chr8-117322131-3	chr8	117321601	117322601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-27069.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	21.17	11.98	15.72	16.87	9.8	16.08	16.9	9.29	12.49
Merged-chr5-109866618-3	chr5	109866113	109867113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32471.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	58.92	73.73	59.2	51.28	59.71	64.3	62.31	56.16	34.97
Merged-chr2-91650101-3	chr2	91649586	91650586	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033451)	promoter-TSS (NM_001033451)	-32.0	NR_027372	228359.0	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	97.25	86.63	82.32	120.1	121.29	116.55	161.6	169.35	74.94
Merged-chr4-19869720-3	chr4	19869244	19870244	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	51017.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	61.78	44.7	32.37	67.47	62.05	86.01	34.85	29.18	29.35
Merged-chr3-14578665-3	chr3	14578181	14579181	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007892)	promoter-TSS (NM_007892)	10.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	111.55	62.21	55.5	97.16	67.18	61.09	51.75	42.01	49.96
Merged-chr6-124745642-3	chr6	124745142	124746142	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007881, exon 6 of 10)	exon (NM_007881, exon 6 of 10)	-4563.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	117.84	90.77	49.95	155.86	135.29	73.14	101.39	109.22	52.46
Merged-chr11-50174789-3	chr11	50174309	50175309	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026543)	promoter-TSS (NM_026543)	-42.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	89.81	71.42	62.9	108.63	104.5	73.14	115.12	104.79	44.97
Merged-chr2-132006717-3	chr2	132006211	132007211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 4 of 10)	intron (NM_175445, intron 4 of 10)	23277.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	139.58	153.9	94.35	161.26	118.49	131.02	94.0	111.87	61.83
Merged-chr18-33213495-3	chr18	33212984	33213984	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347624, intron 1 of 5)	intron (NM_001347624, intron 1 of 5)	378.0	NM_133774	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	70.36	90.77	66.6	47.9	34.06	37.78	44.36	55.71	31.23
Merged-chr6-52842761-3	chr6	52842261	52843261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	MTC|LTR|ERVL-MaLR	66859.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	18.31	12.9	5.55	14.84	13.53	11.25	19.01	9.29	9.99
Merged-chr19-5718207-1	chr19	5717707	5718707	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114597, exon 9 of 19)	exon (NM_001114597, exon 9 of 19)	8110.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	9.72	8.29	18.5	4.72	1.87	28.94	23.24	25.65	35.6
Merged-chr17-17634246-3	chr17	17633749	17634749	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9760.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	85.24	63.59	45.32	45.88	40.12	53.05	76.05	73.4	39.35
Merged-chr1-34389369-3	chr1	34388855	34389855	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43844.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	71.51	80.64	65.67	80.97	44.78	50.64	72.88	73.4	57.46
Merged-chr7-29492079-3	chr7	29491577	29492577	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	L1MC4|LINE|L1	13383.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	30.89	27.65	7.4	17.54	20.99	30.54	51.75	44.22	49.96
Merged-chr11-86683898-3	chr11	86683355	86684355	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175004)	promoter-TSS (NM_175004)	-128.0	NM_175004	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	197.93	150.68	123.94	161.93	147.88	135.84	156.32	181.29	77.44
Merged-chr1-105991389-4	chr1	105990919	105991919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001122676, exon 1 of 14)	exon (NM_001122676, exon 1 of 14)	1013.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	290.03	317.02	320.03	297.55	322.36	256.41	279.89	277.68	207.34
Merged-chr1-171388533-3	chr1	171388010	171389010	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005508)	promoter-TSS (NM_001005508)	-450.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	288.89	217.03	119.32	267.19	187.54	108.51	203.84	279.45	137.4
Merged-chr16-85114097-3	chr16	85113600	85114600	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	MLT1A|LTR|ERVL-MaLR	59607.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	119.56	87.09	67.52	133.59	94.23	109.32	119.35	112.75	65.58
Merged-chr5-115631879-3	chr5	115631376	115632376	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027810)	promoter-TSS (NR_027810)	-60.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	49.77	32.25	33.3	37.78	26.12	46.62	36.97	24.32	28.1
Merged-chr16-31290976-3	chr16	31290502	31291502	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15725.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	114.98	104.14	47.17	113.35	176.34	98.87	122.52	151.22	64.33
Merged-chr1-177737667-3	chr1	177737160	177738160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027077, intron 2 of 5)	intron (NM_027077, intron 2 of 5)	7846.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	8.58	5.53	9.25	4.72	5.13	4.02	5.28	5.31	3.75
Merged-chr1-95666358-3	chr1	95665876	95666876	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	1218.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	49.77	29.95	12.95	63.42	29.86	17.68	30.63	15.92	15.61
Merged-chr13-94296116-3	chr13	94295617	94296617	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10286.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	118.99	105.98	90.65	98.51	134.82	98.06	121.46	128.67	53.08
Merged-chr5-140765017-3	chr5	140764508	140765508	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	PB1D10|SINE|Alu	40881.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	283.17	254.35	177.59	251.67	225.79	266.05	199.62	264.42	127.4
Merged-chr17-50438667-1	chr17	50438167	50439167	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70880.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	18.88	14.28	9.25	44.53	30.32	19.29	19.01	14.59	7.49
Merged-chr18-34557651-1	chr18	34557151	34558151	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	15323.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	1.14	1.38	0.0	0.0	2.33	0.0	29.57	29.63	43.72
Merged-chr2-129595790-1	chr2	129595290	129596290	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	328.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	433.04	427.15	329.28	479.05	410.99	368.14	341.15	504.07	206.72
Merged-chr19-10979992-3	chr19	10979514	10980514	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-5344.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	55.49	45.62	34.22	33.06	27.99	37.78	40.14	38.03	37.47
Merged-chr7-95698231-1	chr7	95697731	95698731	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-473013.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.29	5.07	0.0	2.7	5.13	9.65	1.06	0.88	1.25
Merged-chr5-121943759-2	chr5	121943255	121944255	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	94758.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	16.02	4.61	1.85	8.1	8.4	5.63	2.11	0.88	4.37
Merged-chr4-62662281-3	chr4	62661777	62662777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-11697.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	73.79	63.13	55.5	82.99	43.85	49.83	81.33	53.5	64.33
Merged-chr7-45053345-3	chr7	45052830	45053830	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175022)	promoter-TSS (NM_175022)	-449.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	112.69	96.3	135.04	120.1	118.49	146.29	174.27	152.99	115.54
Merged-chr9-74976121-3	chr9	74975629	74976629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153584)	promoter-TSS (NM_153584)	18.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	82.38	70.96	30.52	116.05	117.56	56.27	68.65	73.84	20.61
Merged-chr5-139364770-3	chr5	139364249	139365249	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4996.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	146.45	123.49	114.69	161.93	121.29	150.31	134.14	148.57	91.18
Merged-chr3-148895919-1	chr3	148895419	148896419	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	58716.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.86	5.07	3.7	4.05	4.2	7.23	4.22	1.33	4.37
Merged-chr16-32419670-3	chr16	32419167	32420167	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025329)	promoter-TSS (NM_025329)	-35.0	NR_154990	66061.0	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	48.62	30.41	35.15	22.27	29.39	28.94	36.97	30.07	45.59
Merged-chr12-85710787-3	chr12	85710277	85711277	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24057.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	193.35	125.33	75.85	157.88	100.77	88.42	91.89	73.4	34.97
Merged-chr2-167717443-3	chr2	167716971	167717971	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26294.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	97.25	75.11	67.52	174.75	108.7	82.79	109.84	101.7	39.35
Merged-chr1-153425126-3	chr1	153424627	153425627	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033162)	promoter-TSS (NM_001033162)	-82.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	20.59	9.68	14.8	31.71	13.53	12.86	20.07	11.94	12.49
Merged-chr7-44835617-3	chr7	44835118	44836118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-670.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	44.62	28.11	36.07	30.36	12.6	21.7	52.81	21.22	18.74
Merged-chr14-120478262-3	chr14	120477769	120478769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029519)	promoter-TSS (NM_029519)	-192.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	311.2	337.75	219.21	324.54	286.44	221.85	262.99	285.2	144.27
Merged-chr19-53284630-3	chr19	53284125	53285125	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25881.0	NM_001008542	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	17.73	11.52	8.32	24.29	16.33	16.08	35.91	34.05	18.74
Merged-chr17-72918281-3	chr17	72917793	72918793	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029999)	promoter-TSS (NM_029999)	-12.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	319.21	350.2	241.41	309.02	339.62	224.26	301.01	324.99	206.72
Merged-chr13-100015679-3	chr13	100015157	100016157	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030026)	promoter-TSS (NM_030026)	-18.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	20.02	19.81	7.4	20.24	25.19	19.29	16.9	28.3	14.99
Merged-chr1-143988906-3	chr1	143988401	143989401	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15248.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	28.6	23.5	21.27	34.41	24.26	43.4	36.97	29.18	48.71
Merged-chr1-138237437-3	chr1	138236947	138237947	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-36291.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	24.03	24.42	25.9	15.52	10.26	12.86	15.84	13.71	14.36
Merged-chr1-97770070-3	chr1	97769579	97770579	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173760)	promoter-TSS (NM_173760)	13.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	68.65	94.92	89.72	90.41	107.3	108.51	125.69	140.17	61.2
Merged-chr4-129335450-3	chr4	129334969	129335969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-99.0	NM_009030	19646.0	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4, chromatin remodeling factor	protein-coding	272.87	291.22	233.09	275.96	289.7	232.29	284.11	328.53	160.5
Merged-chr9-116156791-2	chr9	116156276	116157276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	18587.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	127.57	176.48	73.07	138.99	120.83	82.79	11.62	14.59	13.74
Merged-chr1-157554454-1	chr1	157553954	157554954	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159986, intron 14 of 25)	(CTAGGG)n|Simple_repeat|Simple_repeat	28284.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	5.15	3.23	1.85	6.07	1.4	11.25	3.17	0.88	2.5
Merged-chr15-88515262-3	chr15	88514753	88515753	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-85049.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	130.43	181.55	121.17	159.23	117.09	115.75	168.99	202.95	103.67
Merged-chr3-79239380-3	chr3	79238887	79239887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	26468.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	117.27	126.25	70.3	66.8	60.18	81.99	77.1	113.64	81.19
Merged-chr13-52575676-3	chr13	52575176	52576176	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2451.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	151.59	149.75	135.97	155.86	171.21	164.78	145.75	141.05	81.19
Merged-chr3-116189553-3	chr3	116189034	116190034	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59846.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	124.14	188.46	107.29	147.76	177.27	135.04	155.26	186.15	125.53
Merged-chr7-126791998-2	chr7	126791521	126792521	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019674, intron 2 of 8)	CpG	343.0	NM_001360464	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	274.01	317.48	276.56	271.24	303.23	241.14	261.93	262.21	219.21
Merged-chr1-87214342-3	chr1	87213863	87214863	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001039169, exon 1 of 7)	5' UTR (NM_001039169, exon 1 of 7)	424.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	324.93	188.92	166.49	281.36	144.62	150.31	252.43	146.8	107.42
Merged-chr5-92467199-3	chr5	92466672	92467672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	8615.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	123.56	85.71	76.77	95.81	76.04	126.19	115.12	132.21	78.69
Merged-chr19-34500956-3	chr19	34500468	34501468	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 7 of 9)	RLTR11A|LTR|ERVK	-25833.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	9.72	9.22	16.65	9.45	7.46	3.22	7.39	4.86	10.62
Merged-chr12-51865192-3	chr12	51864701	51865701	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35665.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	207.66	240.07	101.74	324.54	414.26	171.21	168.99	125.58	79.94
Merged-chr17-13867621-3	chr17	13867118	13868118	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-80755.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	133.86	184.77	74.0	149.79	135.29	102.08	84.49	79.15	56.21
Merged-chr8-109565759-3	chr8	109565236	109566236	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	125.0	NR_151644	64340.0	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	208.8	364.94	252.51	186.9	286.44	221.04	245.04	357.27	186.11
Merged-chr14-121877587-3	chr14	121877075	121878075	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130999, intron 1 of 1)	intron (NR_130999, intron 1 of 1)	695.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	48.62	39.63	26.82	59.38	29.86	27.33	88.72	39.35	20.61
Merged-chr1-151500976-3	chr1	151500479	151501479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011277)	promoter-TSS (NM_011277)	12.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	228.82	172.33	170.19	202.42	152.55	153.52	180.61	145.03	138.65
Merged-chr16-20498847-3	chr16	20498344	20499344	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172265)	promoter-TSS (NM_172265)	27.0	NM_172265	224045.0	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	49.77	38.25	38.85	45.21	45.72	47.42	55.98	44.22	25.61
Merged-chr15-12321427-3	chr15	12320928	12321928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025673)	promoter-TSS (NM_025673)	-68.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	324.93	374.16	277.49	325.21	366.68	270.88	341.15	229.04	202.35
Merged-chr19-46075903-3	chr19	46075420	46076420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053086)	promoter-TSS (NM_053086)	73.0	NM_001039351	70769.0	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	226.53	176.48	125.79	170.03	165.61	107.71	180.61	166.25	64.33
Merged-chr2-25196004-3	chr2	25195507	25196507	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146115, intron 1 of 1)	intron (NM_146115, intron 1 of 1)	806.0	NM_146115	227612.0	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	120.7	152.98	117.47	102.56	71.84	152.72	122.52	190.13	117.41
Merged-chr6-47175045-3	chr6	47174563	47175563	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-69333.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	47.48	47.46	38.85	68.82	52.72	58.68	28.52	19.01	9.99
Merged-chr2-84511722-3	chr2	84511190	84512190	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4817.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	21.74	23.5	33.3	17.54	7.46	11.25	10.56	19.01	7.49
Merged-chr7-100434371-3	chr7	100433859	100434859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38632.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	135.58	117.96	84.17	128.2	69.98	95.65	105.62	139.72	76.19
Merged-chr7-29005987-1	chr7	29005487	29006487	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 101 of 105)	RLTR15|LTR|ERVK	23133.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	9.15	13.82	24.05	10.8	7.0	27.33	4.22	2.65	3.75
Merged-chr16-32401772-3	chr16	32401278	32402278	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160402, intron 1 of 4)	intron (NM_001160402, intron 1 of 4)	1272.0	NM_001160402	277203.0	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	58.92	54.37	37.92	51.28	33.12	19.29	30.63	27.86	23.11
Merged-chr5-86065304-1	chr5	86064804	86065804	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001345903, intron 1 of 19)	CpG	279.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	109.26	77.87	88.8	134.94	81.17	85.2	111.96	94.18	56.21
Merged-chr15-6555707-3	chr15	6555189	6556189	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24158.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	96.11	96.76	85.1	93.11	70.44	96.45	115.12	76.94	73.69
Merged-chr12-73908476-3	chr12	73907972	73908972	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010431, intron 1 of 14)	CpG	605.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	163.04	139.16	114.69	182.17	192.2	181.66	224.97	157.41	115.54
Merged-chr13-5845837-3	chr13	5845331	5846331	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12261.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	218.52	334.07	161.87	236.83	355.95	184.87	257.71	330.3	168.0
Merged-chr13-5862346-6	chr13	5861805	5862805	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	816.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	376.98	531.28	287.66	407.53	588.73	279.72	434.09	628.76	286.03
Merged-chr17-78418145-3	chr17	78417643	78418643	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285946)	promoter-TSS (NM_001285946)	9.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	155.6	116.58	148.92	157.21	96.57	129.41	149.98	137.96	113.04
Merged-chr11-120673188-4	chr11	120672783	120673783	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026877, intron 1 of 15)	CpG	310.0	NM_026877	68938.0	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	173.9	123.49	108.22	193.64	168.88	163.17	195.39	131.77	80.56
Merged-chr9-107724369-3	chr9	107723891	107724891	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13916.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	68.65	76.95	50.87	103.91	85.37	119.76	116.18	106.56	73.07
Merged-chr16-24777266-3	chr16	24776748	24777748	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	55393.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	30.89	35.02	32.37	41.83	38.72	46.62	36.97	52.62	24.36
Merged-chr5-45520328-3	chr5	45519839	45520839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025895, exon 1 of 4)	exon (NM_025895, exon 1 of 4)	110.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	110.41	104.14	60.12	104.58	134.35	112.53	139.42	109.66	79.94
Merged-chr8-70614622-3	chr8	70614113	70615113	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2231.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	136.72	136.85	110.07	111.33	98.43	153.52	163.71	173.33	114.29
Merged-chr7-6410258-3	chr7	6409768	6410768	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4907.0	NM_001134752	100042450.0	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	5.72	0.92	1.85	3.37	2.33	1.61	2.11	1.77	1.87
Merged-chr1-152386629-3	chr1	152386128	152387128	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025677)	promoter-TSS (NM_025677)	54.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	7.44	5.07	5.55	6.75	5.13	8.04	9.51	5.31	5.0
Merged-chr9-53405287-3	chr9	53404798	53405798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029247)	promoter-TSS (NM_029247)	12.0	NM_029247	75311.0	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	10.3	7.83	6.47	18.89	10.26	16.88	19.01	19.9	16.24
Merged-chr16-14125469-1	chr16	14124969	14125969	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	33805.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	10.3	10.14	18.5	25.64	17.26	6.43	12.67	7.52	8.74
Merged-chr7-143832444-3	chr7	143831914	143832914	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007856, intron 2 of 8)	intron (NM_007856, intron 2 of 8)	9247.0	NM_007856	13360.0	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	12.59	14.75	10.17	16.19	15.86	6.43	9.51	19.01	2.5
Merged-chr5-32196198-3	chr5	32195688	32196688	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-36520.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	46.91	27.19	28.67	51.28	27.99	56.27	53.87	45.99	33.1
Merged-chr18-20746356-3	chr18	20745857	20746857	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019737)	promoter-TSS (NM_019737)	47.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	135.58	70.96	59.2	169.35	68.11	140.66	127.8	61.46	67.45
Merged-chr4-58546309-3	chr4	58545859	58546859	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6934.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	18.88	16.59	20.35	11.47	10.73	8.04	45.42	26.53	31.23
Merged-chr2-35507316-3	chr2	35506821	35507821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-45872.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	60.64	41.93	41.62	87.04	37.32	53.05	26.4	18.13	15.61
Merged-chr9-123113062-3	chr9	123112558	123113558	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	147.0	NM_026917	69035.0	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	230.54	193.07	211.81	172.73	189.87	213.0	228.14	199.86	141.14
Merged-chr13-59823144-3	chr13	59822635	59823635	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153538)	promoter-TSS (NM_153538)	12.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	477.66	393.05	312.63	367.05	327.49	305.44	358.05	351.97	252.93
Merged-chr1-152526805-1	chr1	152526305	152527305	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 15 of 17)	B4A|SINE|B4	98412.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	76.66	69.58	56.42	100.53	44.32	68.32	71.82	69.86	43.09
Merged-chr14-52197361-3	chr14	52196928	52197928	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033618)	promoter-TSS (NM_033618)	-189.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	235.11	243.29	205.34	210.51	202.93	175.23	256.65	231.25	145.51
Merged-chr1-43912466-3	chr1	43911956	43912956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21538.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	143.59	215.19	104.52	171.38	140.42	122.18	174.27	249.38	111.79
Merged-chrX-48140605-3	chrX	48140101	48141101	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5835.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	46.91	44.24	26.82	39.81	27.52	39.39	50.7	57.04	27.48
Merged-chr1-128102758-3	chr1	128102246	128103246	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027678)	promoter-TSS (NM_027678)	255.0	NM_001357573	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	135.0	179.25	88.8	142.37	151.62	118.96	167.93	196.32	87.43
Merged-chr13-67306455-3	chr13	67305959	67306959	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003666)	promoter-TSS (NM_001003666)	-47.0	NM_001003666	431706.0	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	66.93	98.15	62.9	57.35	86.77	106.1	100.34	83.57	51.21
Merged-chr9-13304225-3	chr9	13303741	13304741	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57285.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	71.51	71.42	73.07	75.57	61.58	66.71	63.37	81.36	42.47
Merged-chr7-127777058-3	chr7	127776551	127777551	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-338.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	288.89	233.16	151.69	229.4	213.19	196.93	223.91	202.51	158.63
Merged-chr16-58509794-3	chr16	58509311	58510311	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	13615.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	99.54	109.67	60.12	124.15	92.84	99.67	121.46	120.71	46.84
Merged-chr11-120598517-3	chr11	120598020	120599020	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011568)	promoter-TSS (NM_011568)	-12.0	NM_001038230	66156.0	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	351.24	201.82	189.62	338.03	146.48	159.15	254.54	126.9	98.05
Merged-chr1-144249151-3	chr1	144248666	144249666	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015811)	promoter-TSS (NM_015811)	-62.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	104.69	99.53	67.52	134.94	96.1	104.49	100.34	115.85	63.08
Merged-chr11-83658975-3	chr11	83658485	83659485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3599.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	96.68	88.01	51.8	106.61	64.38	87.61	79.21	83.13	69.32
Merged-chr7-92741571-3	chr7	92741082	92742082	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	-123.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	251.7	303.2	114.69	213.89	268.71	159.15	249.26	270.16	114.91
Merged-chrUn_JH584304-9526-1	chrUn_JH584304	9026	10026	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	50163.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	403.46	296.69	0.0
Merged-chr9-53610386-3	chr9	53609885	53610885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144784)	promoter-TSS (NM_144784)	-35.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	65.21	78.33	43.47	72.19	62.05	59.48	64.43	64.56	36.85
Merged-chr2-119478055-3	chr2	119477634	119478634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026574)	promoter-TSS (NM_026574)	-505.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	472.52	443.27	313.56	408.88	324.22	305.44	382.34	454.11	235.45
Merged-chr1-16688826-3	chr1	16688308	16689308	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	352.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	204.8	270.94	174.82	199.04	237.45	192.91	239.75	313.05	144.89
Merged-chr10-94486154-1	chr10	94485654	94486654	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIR3|SINE|MIR	-28703.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	21.74	21.2	24.05	26.99	20.06	31.35	13.73	14.15	16.86
Merged-chr17-45752877-3	chr17	45752386	45753386	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	18380.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	42.33	9.68	16.65	30.36	17.26	20.9	35.91	9.29	4.37
Merged-chr12-4237188-3	chr12	4236702	4237702	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204912, exon 2 of 2)	3' UTR (NM_001204912, exon 2 of 2)	3175.0	NM_001204912	69709.0	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	79.52	94.0	74.92	73.54	80.24	90.02	92.94	91.09	65.58
Merged-chr3-31095021-3	chr3	31094533	31095533	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011386)	promoter-TSS (NM_011386)	-25.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	429.61	238.69	317.26	343.43	184.74	269.27	342.2	225.95	155.51
Merged-chr8-64951090-3	chr8	64950592	64951592	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163747, intron 1 of 4)	intron (NM_001163747, intron 1 of 4)	3907.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	25.74	18.43	27.75	16.19	14.0	23.31	6.34	21.67	11.24
Merged-chr10-39443323-3	chr10	39442838	39443838	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MLT1B|LTR|ERVL-MaLR	73539.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	62.35	52.53	55.5	78.94	44.32	48.23	80.27	59.25	37.47
Merged-chr17-71834801-2	chr17	71834296	71835296	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52849.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	83.52	116.58	80.47	109.98	118.03	142.27	2.11	0.0	2.5
Merged-chr6-134799526-1	chr6	134799026	134800026	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151455, intron 1 of 1)	intron (NR_151455, intron 1 of 1)	3876.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	9.15	14.28	9.25	0.67	3.27	1.61	6.34	5.75	2.5
Merged-chr16-30059463-3	chr16	30058926	30059926	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5931.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	24.6	19.35	24.05	10.8	12.13	13.66	16.9	20.78	12.49
Merged-chr17-87974937-3	chr17	87974431	87975431	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-119.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	53.2	60.36	60.12	46.56	41.99	35.37	68.65	65.44	53.08
Merged-chr9-65681097-3	chr9	65680593	65681593	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	4545.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	22.88	31.33	20.35	29.69	25.66	47.42	27.46	24.76	29.98
Merged-chr1-171637330-3	chr1	171636885	171637885	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144539, exon 6 of 8)	exon (NM_144539, exon 6 of 8)	4515.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	84.66	76.49	57.35	93.11	63.45	67.52	106.67	106.12	86.81
Merged-chr17-47054799-3	chr17	47054270	47055270	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44238.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	57.78	46.08	34.22	99.86	111.96	64.3	119.35	130.0	38.72
Merged-chr2-93849921-3	chr2	93849423	93850423	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	20.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	50.34	46.08	44.4	48.58	50.85	52.25	45.42	43.33	29.98
Merged-chr3-61396998-3	chr3	61396503	61397503	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32496.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	69.22	52.07	66.6	86.36	79.31	72.34	57.03	50.85	46.22
Merged-chr12-102354656-3	chr12	102354147	102355147	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	71006.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	67.5	68.2	46.25	39.81	26.12	37.78	90.83	81.8	61.83
Merged-chr18-3383080-3	chr18	3382556	3383556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029402)	promoter-TSS (NM_029402)	86.0	NM_001360829	71745.0	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	122.42	119.8	125.79	119.43	130.16	159.15	143.64	110.1	81.81
Merged-chr2-29678740-3	chr2	29678232	29679232	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	59012.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	42.33	41.01	58.27	47.9	17.26	28.94	33.8	22.55	22.48
Merged-chr4-9676441-3	chr4	9675937	9676937	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7093.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	66.93	61.75	24.05	58.03	47.12	53.05	64.43	63.23	28.73
Merged-chr12-85473511-3	chr12	85472965	85473965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-425.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	434.76	323.01	183.14	438.57	295.77	224.26	331.64	324.99	139.89
Merged-chr8-34146752-3	chr8	34146259	34147259	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-20.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	276.87	213.8	248.81	269.21	217.39	230.69	291.51	260.44	153.63
Merged-chr7-43643317-3	chr7	43642818	43643818	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028236, intron 4 of 5)	intron (NM_028236, intron 4 of 5)	8579.0	NM_028236	72431.0	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	271.15	250.21	160.94	228.73	150.68	146.29	261.93	279.89	150.51
Merged-chr14-120910975-3	chr14	120910476	120911476	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023579)	promoter-TSS (NM_023579)	-218.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	197.93	136.39	88.8	187.57	139.95	98.06	174.27	105.68	76.82
Merged-chr19-40693502-3	chr19	40693006	40694006	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	33736.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	90.38	82.02	87.87	89.74	49.45	69.93	119.35	99.93	54.33
Merged-chr2-75731281-3	chr2	75730809	75731809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26646.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	182.49	157.59	91.57	182.85	125.02	114.94	159.48	168.02	88.06
Merged-chr18-5134354-3	chr18	5133844	5134844	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31387.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	34.9	63.59	76.77	60.05	62.98	85.2	59.15	54.39	51.21
Merged-chr5-129846962-3	chr5	129846469	129847469	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026445)	promoter-TSS (NM_026445)	-21.0	NM_026445	67902.0	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	12.01	11.98	14.8	9.45	13.06	27.33	25.35	16.36	11.87
Merged-chr16-78267682-3	chr16	78267187	78268187	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12233.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	17.16	13.82	20.35	58.7	37.79	53.05	63.37	62.79	32.48
Merged-chr6-34029476-3	chr6	34029007	34030007	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028886)	promoter-TSS (NM_028886)	59.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	19.45	36.86	14.8	39.81	39.19	40.99	29.57	50.85	13.74
Merged-chr2-45246788-3	chr2	45246276	45247276	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129334.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	122.42	116.58	74.0	107.95	97.97	125.39	110.9	130.44	68.7
Merged-chr11-3136103-1	chr11	3135603	3136603	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 24 of 32)	intron (NM_030207, intron 24 of 32)	12082.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	22.88	18.89	73.07	39.13	27.06	83.59	0.0	2.21	75.57
Merged-chr18-69586208-3	chr18	69585713	69586713	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240053.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	134.43	171.87	54.57	157.21	131.09	98.87	100.34	121.15	65.58
Merged-chrX-52988119-3	chrX	52987601	52988601	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013556)	promoter-TSS (NM_013556)	23.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	86.38	117.96	89.72	72.87	78.37	72.34	84.49	84.01	81.19
Merged-chr4-120032559-3	chr4	120032096	120033096	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-128610.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	29.75	14.75	11.1	67.47	34.52	29.74	29.57	8.4	13.74
Merged-chr11-58904227-3	chr11	58903705	58904705	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	20.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	107.55	129.02	105.44	144.39	170.28	94.85	123.57	135.75	76.82
Merged-chr14-70212809-3	chr14	70212324	70213324	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5153.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	212.23	225.78	119.32	184.87	200.13	187.28	217.57	254.25	131.15
Merged-chr15-64102114-2	chr15	64101603	64102603	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 25 of 28)	intron (NM_001276461, intron 25 of 28)	-41655.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	67.5	53.91	55.5	101.21	59.25	64.3	39.08	21.22	10.62
Merged-chr7-35098973-3	chr7	35098485	35099485	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20308.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	28.03	19.81	37.0	35.09	20.53	51.44	21.12	23.88	21.86
Merged-chr2-102752014-3	chr2	102751513	102752513	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-5253.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	98.97	102.75	86.95	71.52	46.65	58.68	59.15	73.4	51.84
Merged-chr19-60889774-3	chr19	60889272	60890272	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	23.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	83.52	110.13	123.94	120.1	144.62	200.95	76.05	82.24	83.69
Merged-chr6-125271701-3	chr6	125271208	125272208	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6183.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	153.31	96.3	81.4	162.61	97.97	92.44	137.3	107.89	53.71
Merged-chr19-34248785-3	chr19	34248280	34249280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 3 of 8)	intron (NM_007392, intron 3 of 8)	6593.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	2.29	9.68	7.4	12.14	10.26	16.08	16.9	9.73	15.61
Merged-chr8-122431675-3	chr8	122431156	122432156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	1284.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	421.03	362.18	270.09	325.21	250.05	284.54	368.61	433.32	201.1
Merged-chr10-88708813-3	chr10	88708299	88709299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22302.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	60.07	68.2	37.92	105.26	82.57	51.44	54.92	49.52	22.48
Merged-chr15-25910272-3	chr15	25909761	25910761	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-23291.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.87	18.89	7.4	22.94	31.26	31.35	16.9	27.41	14.36
Merged-chr13-36315067-3	chr13	36314570	36315570	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	197427.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	18.31	22.58	5.55	20.92	20.99	24.92	20.07	19.01	13.74
Merged-chr18-80691639-3	chr18	80691154	80692154	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 2 of 9)	intron (NM_198429, intron 2 of 9)	16519.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	197.93	137.31	106.37	194.32	132.02	118.96	140.47	120.71	78.69
Merged-chr7-140137655-3	chr7	140137119	140138119	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199301)	promoter-TSS (NM_199301)	55.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	54.35	73.73	107.29	79.62	105.9	112.53	99.28	84.01	61.2
Merged-chr17-86445116-3	chr17	86444621	86445621	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-157943.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	58.92	42.85	24.05	52.63	34.52	39.39	15.84	10.61	8.12
Merged-chr16-45628654-3	chr16	45628156	45629156	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 5 of 5)	MTE2a|LTR|ERVL-MaLR	18216.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	7.44	8.29	7.4	8.1	7.93	4.82	9.51	5.75	5.62
Merged-chr2-167799811-3	chr2	167799307	167800307	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108630.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	165.9	121.65	110.07	157.21	93.77	166.38	191.17	193.23	92.43
Merged-chr5-36581999-3	chr5	36581498	36582498	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	CpG	399.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	143.59	97.23	66.6	111.33	90.5	101.28	130.97	124.69	83.06
Merged-chr9-50774117-3	chr9	50773623	50774623	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1102.0	NM_133981	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	44.05	24.88	9.25	37.78	24.72	23.31	41.19	35.82	28.1
Merged-chr10-10472448-3	chr10	10471936	10472936	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127353)	promoter-TSS (NM_001127353)	-122.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	168.76	182.01	87.87	176.1	168.88	148.7	189.06	205.61	134.9
Merged-chr12-112629548-3	chr12	112629045	112630045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	9498.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	214.52	198.6	140.59	319.82	235.59	172.01	221.8	302.88	124.28
Merged-chr5-107708457-3	chr5	107707955	107708955	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	12.59	9.22	5.55	12.82	7.93	16.08	9.51	7.52	7.49
Merged-chr12-85941115-1	chr12	85940615	85941615	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 28 of 32)	intron (NM_001347395, intron 28 of 32)	116165.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	6.29	3.23	0.92	6.75	8.86	24.92	0.0	4.42	1.87
Merged-chr7-27160039-3	chr7	27159516	27160516	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357767, intron 2 of 4)	intron (NM_001357767, intron 2 of 4)	5712.0	NM_001357767	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	13.73	7.83	11.1	6.07	1.87	8.04	6.34	4.42	13.74
Merged-chr13-107758488-3	chr13	107757973	107758973	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	71076.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	111.55	95.84	45.32	138.99	84.9	71.54	89.78	73.4	47.46
Merged-chr16-11909310-3	chr16	11908827	11909827	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146067)	promoter-TSS (NM_146067)	96.0	NM_146067	223978.0	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	39.47	53.91	42.55	57.35	50.85	79.58	91.89	61.9	46.22
Merged-chrX-159909692-1	chrX	159909192	159910192	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-33001.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.0	14.75	12.95	10.8	10.73	8.04	3.17	7.07	3.12
Merged-chr1-191194248-3	chr1	191193757	191194757	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	137.29	87.09	22.2	137.64	97.5	54.66	125.69	110.1	68.7
Merged-chr10-125213988-3	chr10	125213479	125214479	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94837.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	15.45	9.68	8.32	11.47	10.26	11.25	9.51	6.19	5.62
Merged-chr16-70568804-1	chr16	70568304	70569304	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 15 of 15)	intron (NM_028803, intron 15 of 15)	-47621.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	1.72	2.3	5.55	2.02	1.87	1.61	0.0	1.33	5.0
Merged-chr11-5878321-3	chr11	5877821	5878821	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361942)	promoter-TSS (NM_001361942)	-65.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	42.33	28.57	20.35	32.39	22.86	45.01	45.42	36.7	38.1
Merged-chr13-45109153-3	chr13	45108654	45109654	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107058.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	36.04	18.89	7.4	33.74	22.86	20.09	94.0	106.56	55.58
Merged-chr16-92713995-3	chr16	92713500	92714500	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-16671.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	24.6	19.35	11.1	53.98	27.06	33.76	27.46	13.27	6.25
Merged-chr11-23257464-3	chr11	23256966	23257966	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035226, intron 2 of 25)	intron (NM_001035226, intron 2 of 25)	1425.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	97.82	93.54	78.62	97.83	53.18	93.24	159.48	136.19	83.06
Merged-chr9-20492678-3	chr9	20492183	20493183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	63.0	NM_146221	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	173.33	219.33	151.69	149.79	176.81	161.56	230.25	217.55	118.04
Merged-chr6-38551337-3	chr6	38550828	38551828	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138680)	promoter-TSS (NM_138680)	-6.0	NM_138680	192196.0	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	488.53	398.58	366.28	414.28	367.61	254.0	362.27	350.2	251.68
Merged-chr10-79767064-3	chr10	79766564	79767564	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027505)	promoter-TSS (NR_027505)	-112.0	NR_027505	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	51.48	45.62	46.25	50.6	27.52	54.66	44.36	21.22	31.23
Merged-chr15-73596643-3	chr15	73596153	73597153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168255)	promoter-TSS (NM_001168255)	-127.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	132.72	154.82	134.12	175.43	129.22	134.23	142.59	184.83	102.42
Merged-chr10-81106067-5	chr10	81105675	81106675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347144, exon 1 of 11)	exon (NM_001347144, exon 1 of 11)	260.0	NM_001358539	26396.0	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	304.9	223.02	156.32	302.27	235.59	210.59	269.33	220.2	174.24
Merged-chr9-21165226-3	chr9	21164709	21165709	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183408)	promoter-TSS (NM_183408)	-505.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	41.19	22.58	8.32	47.23	22.86	24.11	24.29	25.2	14.36
Merged-chr8-36993577-3	chr8	36993059	36994059	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039220)	promoter-TSS (NM_001039220)	-16.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	50.34	72.34	65.67	70.17	72.78	65.91	34.85	45.1	44.34
Merged-chr3-90509559-3	chr3	90509078	90510078	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293781)	promoter-TSS (NM_001293781)	-80.0	NM_001293778	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	445.06	474.15	323.73	382.56	414.73	334.38	431.98	392.64	201.72
Merged-chr7-84143302-3	chr7	84142798	84143798	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	8595.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	19.45	17.05	40.7	17.54	13.06	24.11	34.85	15.92	43.72
Merged-chr1-127240148-3	chr1	127239631	127240631	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	35145.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	44.05	35.02	22.2	49.25	39.65	26.53	38.02	39.35	15.61
Merged-chr18-60912005-3	chr18	60911495	60912495	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038499)	promoter-TSS (NM_001038499)	-245.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	22.31	10.14	14.8	17.54	3.73	11.25	15.84	14.59	12.49
Merged-chr10-98915026-3	chr10	98914541	98915541	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-111.0	NM_001359507	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	316.92	170.03	273.79	373.79	192.67	234.71	277.78	179.52	151.14
Merged-chr2-78049529-3	chr2	78049056	78050056	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1621.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	8.01	15.67	14.8	20.24	16.33	14.47	16.9	10.17	13.12
Merged-chr1-182045375-3	chr1	182044888	182045888	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25408.0	NM_001083120	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	4.58	12.44	12.95	5.4	3.73	5.63	8.45	3.1	3.75
Merged-chr1-184535795-3	chr1	184535273	184536273	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	21918.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	153.88	193.07	123.02	199.72	162.81	176.83	123.57	171.12	113.66
Merged-chrX-96145140-3	chrX	96144650	96145650	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	49105.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	33.18	27.65	23.12	22.94	13.06	22.51	19.01	19.01	16.86
Merged-chr10-111540180-3	chr10	111539669	111540669	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33883.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	32.04	28.11	27.75	39.13	18.19	42.6	27.46	15.48	19.98
Merged-chr11-110980433-1	chr11	110979933	110980933	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	intron (NM_010604, intron 1 of 1)	12400.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	25.74	26.73	16.65	90.41	58.78	64.3	40.14	34.93	31.85
Merged-chr7-102441726-3	chr7	102441221	102442221	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009103)	promoter-TSS (NM_009103)	26.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	65.21	53.45	52.72	41.16	42.92	54.66	65.48	40.24	23.11
Merged-chr2-166472281-3	chr2	166471777	166472777	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	24826.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	114.98	60.36	59.2	126.85	64.38	81.18	94.0	58.37	38.1
Merged-chr2-75792575-3	chr2	75792061	75793061	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39616.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	89.24	77.41	86.95	103.91	73.71	78.77	132.02	135.75	77.44
Merged-chr11-109420242-3	chr11	109419723	109420723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5723.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	58.35	40.09	17.57	111.33	72.31	54.66	81.33	46.87	35.6
Merged-chr4-8690207-3	chr4	8689698	8690698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277149)	promoter-TSS (NM_001277149)	-208.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	96.11	76.95	136.89	87.04	72.31	92.44	102.45	49.08	62.45
Merged-chr17-70829377-3	chr17	70828887	70829887	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17390.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	136.15	105.52	87.87	109.98	68.58	92.44	76.05	99.93	67.45
Merged-chr12-35711650-3	chr12	35711132	35712132	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16514.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	34.9	35.02	14.8	38.46	27.06	46.62	14.79	17.69	21.86
Merged-chr19-46598955-3	chr19	46598447	46599447	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177812)	promoter-TSS (NM_001177812)	-159.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	52.06	55.75	61.05	63.42	45.72	59.48	65.48	73.4	56.21
Merged-chr15-53134388-3	chr15	53133893	53134893	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	211790.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	30.89	27.65	21.27	24.29	23.79	36.97	14.79	17.69	16.24
Merged-chr6-140817032-3	chr6	140816527	140817527	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	190142.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	9.72	14.75	9.25	8.77	10.73	15.27	8.45	8.84	8.12
Merged-chr14-27182350-3	chr14	27181871	27182871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	38378.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	54.92	58.98	36.07	128.87	117.09	138.25	39.08	41.56	34.97
Merged-chr4-124714760-3	chr4	124714261	124715261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029157)	promoter-TSS (NM_029157)	-100.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	56.06	48.38	31.45	51.28	55.98	77.16	70.76	51.29	34.97
Merged-chr12-25203764-3	chr12	25203262	25204262	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74588.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	75.51	72.8	60.12	90.41	73.71	87.61	33.8	32.28	39.97
Merged-chr1-12304050-1	chr1	12303550	12304550	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-121936.0	NR_105759	102465961.0		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	6.86	4.15	0.92	4.72	2.33	12.06	2.11	0.44	3.75
Merged-chr17-26933131-3	chr17	26932644	26933644	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302397)	promoter-TSS (NM_001302397)	17.0	NR_126158	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	81.23	83.86	85.1	116.05	101.23	138.25	104.56	86.22	57.46
Merged-chr11-5444960-3	chr11	5444463	5445463	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-116.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	80.09	96.3	97.12	77.59	67.18	107.71	107.73	99.05	81.81
Merged-chr5-32458950-3	chr5	32458444	32459444	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172707)	promoter-TSS (NM_172707)	-26.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	234.54	205.05	160.94	213.89	202.0	197.73	231.3	198.09	141.14
Merged-chr12-77060224-3	chr12	77059729	77060729	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97981.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	100.68	92.16	110.07	112.0	125.02	99.67	105.62	108.77	78.69
Merged-chr2-79228207-3	chr2	79227726	79228726	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27200.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	75.51	56.22	73.07	70.17	30.79	53.05	58.09	53.06	53.08
Merged-chr16-11254420-3	chr16	11253919	11254919	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130008)	promoter-TSS (NM_001130008)	26.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	218.52	223.94	206.26	217.26	215.06	210.59	257.71	245.84	149.89
Merged-chr9-44228343-3	chr9	44227862	44228862	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	5684.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	82.38	58.06	31.45	97.83	53.18	32.15	84.49	77.38	11.87
Merged-chr11-80177415-3	chr11	80176907	80177907	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 10 of 10)	intron (NM_172133, intron 10 of 10)	-6465.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	160.18	143.76	129.49	154.51	96.1	138.25	145.75	169.79	106.17
Merged-chr8-117454387-3	chr8	117453892	117454892	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 17 of 20)	MLT1J|LTR|ERVL-MaLR	1369.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	45.19	30.41	29.6	44.53	37.32	44.21	52.81	32.28	31.85
Merged-chr7-44281138-3	chr7	44280634	44281634	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7976.0	NM_001361137	102632142.0		NM_001361137		Gm18905	-	predicted gene, 18905	protein-coding	4.58	7.37	0.0	4.72	4.2	3.22	6.34	3.98	1.25
Merged-chr2-146134476-2	chr2	146133965	146134965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87532.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	5.15	4.61	5.55	8.1	3.73	0.0	3.17	2.65	5.0
Merged-chr4-32657081-3	chr4	32656598	32657598	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081392)	promoter-TSS (NM_001081392)	-21.0	NM_001081392	100019.0	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	151.59	175.56	117.47	114.7	127.82	163.97	196.45	201.19	102.42
Merged-chr2-25983463-3	chr2	25982956	25983956	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276361)	promoter-TSS (NM_001276361)	-174.0	NM_001276361	227634.0	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	22.88	11.06	8.32	22.27	9.8	11.25	21.12	9.73	6.25
Merged-chr16-18812293-4	chr16	18811788	18812788	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009862)	promoter-TSS (NM_009862)	-6.0	NR_028403	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	348.95	359.87	180.37	292.15	289.7	191.3	340.09	362.58	190.48
Merged-chr10-71356321-3	chr10	71355800	71356800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	L1MC4|LINE|L1	8537.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	23.45	17.97	13.87	22.94	17.73	20.09	26.4	11.94	19.98
Merged-chr2-167319194-3	chr2	167318698	167319698	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	29980.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	230.54	154.82	71.22	284.73	211.79	136.64	173.21	169.35	78.07
Merged-chr11-115277099-3	chr11	115276620	115277620	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	-151.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	143.59	119.8	91.57	113.35	106.83	110.92	140.47	163.16	81.19
Merged-chr6-122872988-3	chr6	122872470	122873470	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1587.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	209.94	202.75	116.54	194.32	178.21	129.41	180.61	225.06	108.04
Merged-chr12-32061339-3	chr12	32060845	32061845	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011158)	promoter-TSS (NM_011158)	-66.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	7.44	1.84	0.0	3.37	2.33	4.02	4.22	1.77	3.75
Merged-chr2-102948696-3	chr2	102948209	102949209	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47044.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	28.03	10.14	5.55	43.18	23.79	27.33	24.29	8.4	14.36
Merged-chr4-119131312-1	chr4	119130812	119131812	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	intron (NM_011400, intron 2 of 9)	22567.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	8.01	1.38	1.85	2.02	1.87	5.63	2.11	4.42	1.87
Merged-chr2-59160761-3	chr2	59160256	59161256	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026361)	promoter-TSS (NM_026361)	-73.0	NM_001362394	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	201.93	121.65	141.52	187.57	137.62	141.47	181.66	183.94	107.42
Merged-chr2-71500047-3	chr2	71499553	71500553	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025633, intron 1 of 9)	intron (NM_025633, intron 1 of 9)	-29392.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	18.88	13.36	11.1	16.87	20.06	28.13	15.84	10.61	12.49
Merged-chr11-3196514-5	chr11	3195951	3196951	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2988.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	64.64	63.59	140.59	54.65	80.24	125.39	100.34	57.92	140.52
Merged-chr11-5445658-3	chr11	5445130	5446130	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080924)	promoter-TSS (NM_001080924)	-783.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	69.22	97.23	68.45	78.94	71.38	109.32	87.66	112.31	78.69
Merged-chr6-39781102-3	chr6	39780607	39781607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29829.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	275.73	296.28	255.29	228.73	257.98	236.31	258.77	311.29	158.63
Merged-chr4-59238804-3	chr4	59238264	59239264	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21287.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	84.66	71.42	58.27	80.97	63.91	66.71	85.55	88.43	65.58
Merged-chr10-120113026-3	chr10	120112518	120113518	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-53.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	83.52	110.59	83.25	106.61	106.36	119.76	114.07	105.24	70.57
Merged-chr1-156450716-3	chr1	156450182	156451182	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	23646.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	100.68	147.91	102.67	143.71	136.22	114.94	81.33	133.53	43.72
Merged-chr10-111164689-3	chr10	111164195	111165195	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-107.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	335.8	312.87	232.16	351.53	314.43	230.69	287.28	264.42	159.88
Merged-chr6-82996942-3	chr6	82996428	82997428	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	36543.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	196.21	146.99	82.32	192.97	133.89	167.99	137.3	173.33	83.69
Merged-chrX-74271331-3	chrX	74270835	74271835	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052835, intron 2 of 6)	intron (NM_052835, intron 2 of 6)	519.0	NM_052835	110954.0	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	177.91	161.74	90.65	163.96	186.6	89.22	137.3	163.16	91.81
Merged-chr12-85532741-3	chr12	85532261	85533261	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58871.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	506.84	359.41	224.76	433.17	284.57	217.83	285.17	397.07	147.39
Merged-chr13-49173236-4	chr13	49172769	49173769	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-14278.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	25.74	13.36	5.55	17.54	10.26	19.29	24.29	15.48	16.24
Merged-chr5-34525815-3	chr5	34525302	34526302	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011893)	promoter-TSS (NM_011893)	18.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	42.9	33.18	36.07	33.06	39.65	55.46	57.03	35.82	39.35
Merged-chr5-35631403-3	chr5	35630902	35631902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42639.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	10.87	15.67	14.8	10.8	6.53	24.11	16.9	5.75	6.87
Merged-chr15-95808070-3	chr15	95807567	95808567	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	17224.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	66.93	37.32	60.12	87.71	54.58	84.4	66.54	56.6	36.22
Merged-chr10-51520183-3	chr10	51519675	51520675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	29277.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	29.17	25.34	16.65	38.46	18.66	36.17	24.29	14.59	17.49
Merged-chr6-38965655-3	chr6	38965160	38966160	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	MTEa|LTR|ERVL-MaLR	46674.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	54.35	45.16	49.95	63.42	24.72	45.82	50.7	37.58	26.85
Merged-chr1-58802538-3	chr1	58802077	58803077	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	75.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	98.39	134.09	120.24	114.7	101.23	135.84	139.42	136.19	101.17
Merged-chr7-24662734-3	chr7	24662224	24663224	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030681, exon 2 of 2)	non-coding (NR_030681, exon 2 of 2)	1430.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	12.01	7.83	5.55	11.47	10.73	7.23	12.67	6.19	5.0
Merged-chr8-56315375-3	chr8	56314871	56315871	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	20819.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	50.91	52.07	26.82	46.56	42.92	48.23	39.08	32.28	38.1
Merged-chr15-64191459-3	chr15	64190965	64191965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	121208.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	52.63	66.81	39.77	51.28	48.52	31.35	52.81	42.89	44.34
Merged-chr11-87448291-3	chr11	87447806	87448806	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	CpG	20715.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	105.83	93.54	49.02	139.67	103.56	49.83	84.49	115.85	21.86
Merged-chr19-32389225-3	chr19	32388720	32389720	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	4.0	NR_033198	67188.0	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	142.44	105.52	86.02	147.09	125.49	111.73	109.84	90.64	71.82
Merged-chr7-19405615-3	chr7	19405134	19406134	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1530.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	12.01	8.75	1.85	13.49	8.4	7.23	10.56	4.42	5.62
Merged-chr19-5688925-3	chr19	5688375	5689375	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022012)	promoter-TSS (NM_022012)	33.0	NM_144868	104401.0	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	251.13	218.87	166.49	190.95	154.41	180.05	215.46	289.18	118.04
Merged-chr18-4908907-3	chr18	4908414	4909414	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96428.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	19.45	53.91	37.92	33.74	42.92	61.09	25.35	15.48	22.48
Merged-chr1-94582208-3	chr1	94581699	94582699	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-215243.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	29.75	41.47	12.95	56.0	51.78	57.87	39.08	44.66	38.1
Merged-chr14-67858941-3	chr14	67858445	67859445	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105857)	TTS (NR_105857)	800.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	99.54	131.32	78.62	129.55	105.9	146.29	58.09	71.63	42.47
Merged-chr7-89248279-3	chr7	89247770	89248770	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	90517.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	69.79	74.19	29.6	91.76	84.9	46.62	84.49	81.36	53.71
Merged-chr4-33031416-3	chr4	33030908	33031908	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_036602)	promoter-TSS (NR_036602)	28.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	364.4	295.82	240.49	375.82	245.38	209.79	341.15	201.63	145.51
Merged-chr5-122769432-3	chr5	122768902	122769902	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	ID_B1|SINE|B4	10008.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	62.93	44.24	27.75	103.91	92.37	61.09	45.42	46.87	41.84
Merged-chr6-115480893-3	chr6	115480387	115481387	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	MIR|SINE|MIR	58821.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	131.0	132.25	121.17	132.24	103.1	116.55	111.96	125.58	73.69
Merged-chr6-143099635-3	chr6	143099153	143100153	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362118, intron 2 of 25)	CpG	499.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	44.62	46.54	59.2	60.72	46.18	51.44	122.52	72.96	44.97
Merged-chr12-44269720-3	chr12	44269219	44270219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	565.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	342.66	340.52	320.03	313.07	311.63	263.64	332.7	294.93	223.58
Merged-chr11-69586061-2	chr11	69585550	69586550	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	5691.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	6.29	8.75	17.57	41.83	26.59	39.39	42.25	39.8	19.98
Merged-chr7-109968007-3	chr7	109967504	109968504	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7534.0	NM_001311139	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	31.46	8.29	23.12	14.17	9.8	20.09	12.67	6.19	10.62
Merged-chr5-143403830-3	chr5	143403359	143404359	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025841)	promoter-TSS (NM_025841)	39.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	82.38	76.95	64.75	74.22	88.17	79.58	88.72	59.69	44.34
Merged-chr17-84084126-3	chr17	84083611	84084611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	5451.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	170.47	117.5	130.42	149.79	96.1	120.57	227.08	217.1	114.29
Merged-chr7-19131581-3	chr7	19131083	19132083	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175530, intron 1 of 1)	CpG	11724.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	39.47	21.2	22.2	14.84	15.39	24.92	26.4	23.43	19.36
Merged-chr18-6490834-3	chr18	6490322	6491322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276350)	promoter-TSS (NM_001276350)	35.0	NM_027497	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	376.98	485.21	329.28	324.54	433.39	370.55	359.1	339.58	259.18
Merged-chrUn_JH584304-48928-1	chrUn_JH584304	48428	49428	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10761.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	45.42	17.69	0.0
Merged-chr18-55389837-3	chr18	55389322	55390322	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-397231.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	24.6	12.9	4.62	19.57	8.86	20.9	12.67	6.63	16.86
Merged-chr12-98283294-3	chr12	98282789	98283789	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1c|LTR|Gypsy	14654.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	166.47	110.59	71.22	138.99	86.77	130.21	123.57	130.0	100.55
Merged-chr3-27711299-3	chr3	27710800	27711800	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173182)	promoter-TSS (NM_173182)	-848.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	228.82	195.37	184.07	231.43	209.93	167.99	194.34	155.2	123.66
Merged-chr19-11912914-3	chr19	11912416	11913416	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 1 of 18)	CpG	517.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	356.39	277.85	200.71	340.06	270.11	221.85	350.65	296.69	153.01
Merged-chr18-60714919-3	chr18	60714426	60715426	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	12640.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	33.18	25.34	28.67	55.33	28.46	39.39	25.35	30.95	38.1
Merged-chr2-132816123-3	chr2	132815612	132816612	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356443)	promoter-TSS (NM_001356443)	-29.0	NM_025676	66634.0	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	141.3	137.31	92.5	150.46	174.94	123.78	166.88	154.76	68.07
Merged-chr9-88705476-3	chr9	88705001	88706001	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	14086.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	48.05	55.75	27.75	62.07	42.45	32.15	46.47	37.14	16.24
Merged-chr1-130387449-3	chr1	130386929	130387929	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35395.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	20.59	25.34	11.1	20.24	11.66	12.86	23.24	15.48	11.87
Merged-chr17-34293733-3	chr17	34293230	34294230	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	83.52	47.92	51.8	45.88	16.79	10.45	80.27	65.0	24.98
Merged-chr9-96119288-3	chr9	96118810	96119810	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177352)	promoter-TSS (NM_177352)	-119.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	43.48	48.38	31.45	45.88	57.38	51.44	36.97	30.07	25.61
Merged-chr1-191250182-3	chr1	191249672	191250672	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25718.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	45.76	24.42	30.52	56.0	27.52	20.09	23.24	21.22	20.61
Merged-chr13-94788986-3	chr13	94788515	94789515	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009321)	promoter-TSS (NM_009321)	72.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	97.25	60.36	65.67	103.23	64.84	61.89	84.49	45.1	38.1
Merged-chr9-44066972-3	chr9	44066473	44067473	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198092)	promoter-TSS (NM_198092)	-48.0	NM_198092	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	23.45	9.68	9.25	13.49	10.26	9.65	13.73	9.29	5.62
Merged-chr11-50210772-2	chr11	50210299	50211299	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	21.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	545.74	446.96	325.58	542.47	421.72	327.95	366.5	356.39	230.45
Merged-chr9-72530438-3	chr9	72529925	72530925	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	intron (NR_045735, intron 1 of 2)	1433.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	14.87	17.51	5.55	16.87	8.4	12.86	26.4	12.82	6.87
Merged-chr2-124202790-3	chr2	124202280	124203280	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	19578.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	4.58	5.99	1.85	2.02	7.46	9.65	8.45	3.98	7.49
Merged-chr11-51927377-3	chr11	51926875	51927875	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40256.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	67.5	60.36	57.35	70.17	79.31	54.66	98.23	108.77	51.84
Merged-chr11-70615215-3	chr11	70614739	70615739	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145537)	promoter-TSS (NM_001145537)	-655.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	45.19	32.72	33.3	43.86	33.12	57.87	38.02	37.14	22.48
Merged-chr19-46396837-3	chr19	46396336	46397336	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015752)	promoter-TSS (NM_015752)	-60.0	NM_001025391	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	41.76	22.58	24.05	24.29	16.79	30.54	29.57	32.28	31.85
Merged-chr4-34495210-3	chr4	34494707	34495707	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55408.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	33.75	52.07	48.1	39.81	34.99	53.05	30.63	42.45	38.72
Merged-chr2-127079272-3	chr2	127078771	127079771	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 1 of 7)	RLTR28|LTR|ERVL	8614.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	161.89	146.99	140.59	139.67	113.36	151.11	141.53	158.3	122.41
Merged-chr5-121842113-3	chr5	121841618	121842618	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5259.0	NM_008507	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	118.42	111.97	71.22	149.79	126.42	130.21	84.49	95.95	52.46
Merged-chr6-120470809-3	chr6	120470269	120471269	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	7572.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	145.3	155.28	158.17	201.07	159.08	147.09	110.9	149.45	102.42
Merged-chr2-174464098-3	chr2	174463556	174464556	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025983)	promoter-TSS (NM_025983)	45.0	NM_025983	67126.0	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645|Atp5f1e	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	89.81	89.39	74.0	110.65	120.83	92.44	126.74	116.73	78.69
Merged-chr9-72526285-3	chr9	72525785	72526785	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	5573.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	18.31	9.22	21.27	6.07	10.73	14.47	6.34	4.86	6.25
Merged-chr4-152477627-3	chr4	152477158	152478158	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355173)	promoter-TSS (NM_001355173)	-80.0	NM_001355739	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	97.82	136.39	74.0	100.53	104.96	98.06	143.64	95.07	81.81
Merged-chr5-128733951-1	chr5	128733451	128734451	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2295.0	NM_021311	57749.0	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	2.29	2.3	5.55	2.7	5.6	3.22	4.22	1.33	3.75
Merged-chr6-5159525-3	chr6	5159023	5160023	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 15 of 15)	intron (NM_181595, intron 15 of 15)	34423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	32.04	24.42	12.02	46.56	34.06	24.11	31.69	19.46	11.24
Merged-chr10-17723163-3	chr10	17722651	17723651	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	-77.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	124.71	141.46	91.57	116.73	108.7	135.04	145.75	122.48	99.3
Merged-chr8-107150636-3	chr8	107150141	107151141	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025558)	promoter-TSS (NM_025558)	-20.0	NM_025558	66427.0	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	59.49	71.88	40.7	53.98	71.38	47.42	122.52	106.56	55.58
Merged-chr4-145195031-3	chr4	145194548	145195548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276465)	promoter-TSS (NM_001276465)	-43.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	84.09	71.42	64.75	87.71	89.57	74.75	115.12	108.33	34.35
Merged-chr15-89429472-3	chr15	89428977	89429977	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004843, exon 1 of 27)	non-coding (NR_004843, exon 1 of 27)	450.0	NR_037154	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	319.78	408.72	293.21	299.57	407.73	264.45	294.68	362.13	186.73
Merged-chr6-38534801-3	chr6	38534294	38535294	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-67.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	216.81	244.68	179.44	190.27	201.53	194.52	198.56	240.98	109.92
Merged-chr17-78937156-3	chr17	78936694	78937694	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	59.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	111.55	149.75	63.82	107.28	160.01	98.06	122.52	163.16	63.7
Merged-chr2-116932466-3	chr2	116931965	116932965	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32313.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	68.07	75.11	74.92	87.04	75.57	90.02	89.78	88.43	72.45
Merged-chr3-8969724-3	chr3	8969219	8970219	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-5573.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	80.66	66.35	75.85	132.24	68.58	98.06	139.42	105.24	98.05
Merged-chr16-3847191-3	chr16	3846710	3847710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081217)	promoter-TSS (NM_001081217)	-13.0	NM_001081217	385674.0	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	17.16	19.35	18.5	22.94	16.79	28.94	22.18	19.9	17.49
Merged-chr4-46536116-3	chr4	46535615	46536615	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029077)	promoter-TSS (NM_029077)	26.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	65.79	52.07	70.3	66.8	41.99	73.95	86.61	68.09	37.47
Merged-chr2-27515126-3	chr2	27514607	27515607	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080848)	promoter-TSS (NM_080848)	-40.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	105.83	80.18	82.32	112.68	97.03	140.66	114.07	107.45	71.82
Merged-chr11-21288316-1	chr11	21287816	21288816	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290628, intron 7 of 22)	B2_Mm1t|SINE|B2	49284.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.86	4.61	1.85	9.45	2.33	10.45	2.11	4.86	5.0
Merged-chr2-152736234-3	chr2	152735723	152736723	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010495)	promoter-TSS (NM_010495)	-28.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	128.14	135.93	113.77	115.38	121.76	127.0	155.26	131.32	86.18
Merged-chr17-13144966-4	chr17	13144413	13145413	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13122.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	48.62	34.1	10.17	65.45	70.91	38.58	41.19	26.97	10.62
Merged-chr15-93268226-3	chr15	93267725	93268725	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	6954.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	36.04	31.33	20.35	22.27	9.33	14.47	14.79	23.88	13.74
Merged-chr2-180273594-3	chr2	180273079	180274079	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-114.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	80.09	57.6	55.5	81.64	50.38	55.46	89.78	49.96	37.47
Merged-chr13-101909200-3	chr13	101908710	101909710	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140993.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	199.07	205.51	100.82	226.03	171.21	151.11	190.11	204.72	101.8
Merged-chr8-35540706-1	chr8	35540206	35541206	+	1000.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45173.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	1.14	1.84	0.0	1.35	0.93	0.8	19.01	19.01	17.49
Merged-chr11-85521175-3	chr11	85520675	85521675	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	168011.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	45.76	51.15	42.55	97.16	69.04	45.01	48.58	38.03	6.25
Merged-chr7-31037177-3	chr7	31036665	31037665	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 5 of 8)	MLT1K|LTR|ERVL-MaLR	3152.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	21.74	24.42	35.15	20.92	14.93	12.86	32.74	30.07	14.99
Merged-chr7-45124446-3	chr7	45123910	45124910	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013725)	promoter-TSS (NM_013725)	-21.0	NM_013725	27207.0	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	158.46	145.15	157.24	131.57	161.88	159.15	127.8	168.47	116.79
Merged-chr13-18800599-3	chr13	18800095	18801095	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	83303.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	112.69	132.71	78.62	114.03	109.16	82.79	99.28	128.67	77.44
Merged-chr2-3621546-3	chr2	3621047	3622047	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-91911.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	33.75	29.49	19.42	20.24	18.66	22.51	24.29	15.92	19.98
Merged-chr11-120776258-3	chr11	120775765	120776765	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7939.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	6.86	3.23	2.77	4.72	5.6	0.0	3.17	3.54	1.25
Merged-chr8-36248131-5	chr8	36247629	36248629	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081150, intron 1 of 11)	CpG	1387.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	656.72	487.51	394.96	442.61	413.79	321.52	429.87	408.56	193.6
Merged-chr10-7040322-3	chr10	7039824	7040824	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17139.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	86.38	82.02	58.27	112.68	60.65	90.02	62.31	73.4	60.58
Merged-chr16-74233975-1	chr16	74233475	74234475	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 2 of 28)	MTD|LTR|ERVL-MaLR	108092.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	3.43	4.15	5.55	3.37	5.13	9.65	4.22	6.19	2.5
Merged-chr15-99815062-3	chr15	99814575	99815575	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	5074.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	106.4	94.92	75.85	68.82	59.71	54.66	122.52	90.2	94.3
Merged-chr9-90014816-3	chr9	90014317	90015317	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-39450.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	37.76	41.93	30.52	28.34	34.99	18.49	38.02	57.04	30.6
Merged-chr5-135168408-3	chr5	135167899	135168899	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009745)	promoter-TSS (NM_009745)	27.0	NM_009745	12054.0	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	427.9	418.85	311.71	490.52	442.72	258.02	367.55	386.45	212.34
Merged-chr9-108936714-3	chr9	108936240	108937240	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	92.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	96.68	96.76	84.17	101.88	79.31	92.44	111.96	76.49	53.08
Merged-chr18-10030027-3	chr18	10029543	10030543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360884)	promoter-TSS (NM_001360884)	106.0	NM_001038589	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	161.32	163.58	138.74	157.88	174.47	127.0	137.3	139.72	85.56
Merged-chr18-46434061-3	chr18	46433548	46434548	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31768.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	36.04	17.05	18.5	35.09	24.26	28.94	20.07	20.34	29.98
Merged-chr8-26835844-3	chr8	26835349	26836349	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11426.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	22.88	23.96	16.65	28.34	24.26	35.37	43.3	25.2	25.61
Merged-chr2-155050929-3	chr2	155050420	155051420	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_015770)	TTS (NM_015770)	23577.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	89.24	57.14	62.9	120.77	104.96	89.22	88.72	87.55	37.47
Merged-chr12-55491301-3	chr12	55490809	55491809	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010907, exon 3 of 6)	exon (NM_010907, exon 3 of 6)	1338.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	391.28	428.07	266.39	400.78	317.23	276.5	457.33	569.07	223.58
Merged-chr11-83064144-3	chr11	83063641	83064641	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011408)	promoter-TSS (NM_011408)	-971.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	224.25	171.41	135.97	213.21	160.48	131.82	195.39	192.34	143.02
Merged-chr1-63414043-1	chr1	63413543	63414543	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31848.0	NM_011780	23792.0	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	3.43	7.83	10.17	3.37	0.93	0.0	3.17	2.65	0.0
Merged-chr8-109778542-3	chr8	109778035	109779035	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009677)	promoter-TSS (NM_009677)	-48.0	NM_009677	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	350.1	308.73	331.13	288.1	297.63	250.78	325.31	268.4	200.47
Merged-chr2-118814162-3	chr2	118813652	118814652	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026412, exon 1 of 9)	exon (NM_026412, exon 1 of 9)	149.0	NM_026412	51944.0	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	4.58	8.29	7.4	13.49	5.6	13.66	14.79	2.65	13.12
Merged-chr10-6717756-3	chr10	6717275	6718275	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-40818.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	98.97	82.48	75.85	90.41	60.65	73.14	94.0	86.66	36.85
Merged-chr1-89450228-3	chr1	89449733	89450733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	16.02	6.91	4.62	41.16	29.39	20.09	12.67	11.94	3.75
Merged-chr6-112760841-3	chr6	112760343	112761343	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 10 of 21)	intron (NM_080448, intron 10 of 21)	-64173.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	22.31	21.2	5.55	18.22	17.26	10.45	15.84	15.48	11.87
Merged-chr1-173737177-3	chr1	173736670	173737670	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4639.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	109.83	105.98	41.62	168.68	143.68	102.88	100.34	95.07	74.32
Merged-chr10-13966947-3	chr10	13966439	13967439	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	CpG-904	560.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	310.05	273.71	231.24	307.0	250.52	246.76	334.81	285.64	192.35
Merged-chr7-35028824-3	chr7	35028319	35029319	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	27747.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	138.44	122.11	114.69	174.08	131.09	154.33	185.89	179.52	113.66
Merged-chr3-98005535-3	chr3	98005041	98006041	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7997.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	25.17	12.44	29.6	26.31	16.33	10.45	12.67	17.24	8.74
Merged-chr10-111506446-3	chr10	111505922	111506922	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	136.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	59.49	41.93	27.75	60.05	30.79	29.74	34.85	20.34	25.61
Merged-chr5-139666669-3	chr5	139666164	139667164	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69669.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	20.59	16.59	6.47	6.75	9.8	6.43	13.73	9.29	10.62
Merged-chr11-78183582-3	chr11	78183060	78184060	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207523)	promoter-TSS (NM_207523)	24.0	NM_207523	268449.0	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	34.9	29.03	37.0	37.11	38.25	42.6	63.37	75.17	28.73
Merged-chr10-80329962-3	chr10	80329454	80330454	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	-191.0	NM_001204931	70335.0	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	10.3	6.91	3.7	11.47	2.8	9.65	4.22	5.31	5.62
Merged-chr13-44733586-3	chr13	44733116	44734116	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	CpG	2345.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	342.66	225.78	142.44	333.99	198.73	183.26	260.88	179.08	88.68
Merged-chr18-57878153-3	chr18	57877663	57878663	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009194)	promoter-TSS (NM_009194)	-515.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	66.36	74.65	51.8	87.04	90.5	63.5	68.65	68.09	48.09
Merged-chr9-99182315-3	chr9	99181839	99182839	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42128.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	265.43	298.13	180.37	284.73	224.86	175.23	254.54	292.27	138.02
Merged-chr2-102400643-3	chr2	102400183	102401183	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020267, exon 1 of 5)	exon (NM_020267, exon 1 of 5)	217.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	74.94	60.36	50.87	80.29	45.72	42.6	87.66	39.8	31.85
Merged-chr5-125434143-3	chr5	125433646	125434646	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203319)	promoter-TSS (NM_203319)	-98.0	NM_203319	208144.0	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	80.09	85.71	45.32	81.64	109.16	65.11	92.94	91.09	62.45
Merged-chr4-155235458-3	chr4	155234969	155235969	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12934.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	264.86	315.18	144.29	213.21	213.66	194.52	198.56	214.89	161.13
Merged-chrX-51018882-3	chrX	51018368	51019368	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172413)	promoter-TSS (NM_172413)	-850.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	194.5	158.97	164.64	152.49	123.62	186.48	157.37	142.82	88.06
Merged-chr3-69004545-3	chr3	69004045	69005045	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133786)	promoter-TSS (NM_133786)	25.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	72.08	99.99	68.45	82.99	72.78	37.78	95.06	95.07	49.96
Merged-chr10-98958940-3	chr10	98958450	98959450	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	43798.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	20.02	22.58	19.42	48.58	13.06	14.47	33.8	23.88	18.74
Merged-chr1-144317791-3	chr1	144317301	144318301	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68697.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	160.75	220.25	135.04	246.27	225.79	180.05	146.81	179.08	123.66
Merged-chr6-123049948-3	chr6	123049453	123050453	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190310)	promoter-TSS (NM_001190310)	-9.0	NM_027218	69810.0	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	30.89	50.23	50.87	50.6	38.72	39.39	29.57	30.95	38.72
Merged-chr17-25184516-3	chr17	25184025	25185025	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183150)	promoter-TSS (NM_183150)	-36.0	NM_183150	214489.0	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	241.98	235.46	149.84	182.85	164.21	200.14	213.35	252.92	146.14
Merged-chr3-95855867-3	chr3	95855380	95856380	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027541)	promoter-TSS (NM_027541)	5.0	NM_001316751	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	75.51	82.94	47.17	98.51	76.51	67.52	104.56	100.37	46.22
Merged-chr7-141447265-3	chr7	141446773	141447773	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360657)	promoter-TSS (NM_001360657)	-378.0	NM_026020	67186.0	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	185.92	188.92	122.09	163.28	168.41	107.71	214.41	211.8	82.44
Merged-chr2-166699613-4	chr2	166699069	166700069	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	14263.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	249.99	172.33	175.74	233.45	135.75	115.75	229.19	242.31	121.78
Merged-chr7-99483750-3	chr7	99483242	99484242	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012052)	promoter-TSS (NM_012052)	-33.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	140.73	133.63	61.97	153.16	196.4	106.9	154.2	148.57	84.94
Merged-chr7-132931108-3	chr7	132930611	132931611	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362198)	promoter-TSS (NM_001362198)	-31.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	294.61	235.46	254.36	309.7	214.13	190.5	297.84	210.91	169.87
Merged-chr7-39544399-3	chr7	39543901	39544901	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26635.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	36.04	51.15	82.32	50.6	65.31	77.97	79.21	53.5	62.45
Merged-chr8-84656938-3	chr8	84656446	84657446	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5906.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	41.19	27.65	19.42	37.11	17.26	21.7	22.18	15.48	14.99
Merged-chr1-9747805-3	chr1	9747313	9748313	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040462, exon 1 of 4)	non-coding (NR_040462, exon 1 of 4)	165.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	229.97	256.66	216.44	190.95	203.86	211.4	227.08	223.29	175.49
Merged-chr9-21515517-3	chr9	21515009	21516009	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5275.0	NR_136911	17083.0	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	73.22	50.69	62.9	61.4	41.05	79.58	58.09	70.3	35.6
Merged-chr15-74988702-3	chr15	74988201	74989201	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5271.0	NM_020498	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	199.65	184.31	154.47	141.02	158.15	117.35	325.31	404.14	131.78
Merged-chr18-62225235-3	chr18	62224733	62225733	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45133.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	59.49	73.26	52.72	53.3	37.79	48.23	29.57	56.16	36.85
Merged-chr6-122602389-3	chr6	122601898	122602898	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	46.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	181.91	217.95	142.44	176.78	133.42	102.08	275.66	291.39	121.16
Merged-chr1-34715381-2	chr1	34714863	34715863	+	1000.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79153.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	4.0	3.69	1.85	37.78	29.39	45.82	52.81	56.6	34.97
Merged-chr2-103945992-3	chr2	103945510	103946510	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11985.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	61.21	52.53	52.72	56.68	53.18	50.64	64.43	58.81	46.84
Merged-chr15-8109184-3	chr15	8108677	8109677	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133227)	promoter-TSS (NM_133227)	-136.0	NM_133227	170762.0	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	113.27	103.68	74.92	87.04	104.5	122.98	142.59	91.09	68.7
Merged-chr12-85489435-3	chr12	85488934	85489934	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	96.11	95.84	91.57	118.08	86.77	97.26	87.66	87.55	77.44
Merged-chr11-116814708-2	chr11	116814211	116815211	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347633, intron 2 of 4)	intron (NM_001347633, intron 2 of 4)	13335.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	51.48	29.95	27.75	73.54	36.39	46.62	4.22	0.88	1.25
Merged-chr17-8311849-3	chr17	8311360	8312360	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073374)	promoter-TSS (NR_073374)	-742.0	NR_073374	75060.0	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	215.09	310.57	194.24	236.83	345.68	250.78	249.26	327.65	149.89
Merged-chr3-41408595-3	chr3	41408144	41409144	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84555.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	43.48	47.0	16.65	77.59	70.44	33.76	39.08	34.49	10.62
Merged-chr9-25570531-3	chr9	25570032	25571032	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	88935.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	81.23	79.72	33.3	99.86	82.57	61.09	94.0	75.61	38.1
Merged-chr13-37345351-3	chr13	37344869	37345869	+	1000.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010745)	promoter-TSS (NM_010745)	24.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	326.64	318.4	203.49	296.2	226.26	203.36	279.89	318.36	164.25
Merged-chr11-106319062-4	chr11	106318581	106319581	+	999.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133199, exon 24 of 24)	3' UTR (NM_133199, exon 24 of 24)	-4519.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	34.32	33.64	44.4	42.51	29.39	77.97	32.74	46.87	44.34
Merged-chr5-146293503-3	chr5	146293000	146294000	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 7 of 12)	intron (NM_153599, intron 7 of 12)	62250.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	49.77	47.92	23.12	72.19	59.25	48.23	54.92	57.04	21.23
Merged-chr13-101850276-3	chr13	101849793	101850793	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-82076.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	24.03	31.79	21.27	31.04	23.79	24.11	38.02	45.54	27.48
Merged-chr6-134461342-3	chr6	134460819	134461819	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 17 of 22)	intron (NM_008514, intron 17 of 22)	46891.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	137.29	150.68	61.97	177.45	174.01	136.64	21.12	23.88	16.24
Merged-chr6-43848627-3	chr6	43848128	43849128	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182350.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	13.73	48.38	37.92	34.41	29.86	63.5	28.52	17.24	14.99
Merged-chr9-66082168-3	chr9	66081659	66082659	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12428.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	25.17	18.89	47.17	16.87	11.66	18.49	13.73	11.94	25.61
Merged-chr17-81668168-3	chr17	81667676	81668676	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	70211.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	52.63	35.48	37.92	51.28	24.26	33.76	44.36	30.07	50.59
Merged-chr14-47354299-3	chr14	47353785	47354785	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19575.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	64.07	61.28	24.05	98.51	70.44	80.38	90.83	103.02	23.11
Merged-chr1-34867424-3	chr1	34866949	34867949	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 6 of 7)	intron (NM_145516, intron 6 of 7)	17460.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	12.01	4.61	7.4	6.75	7.0	4.82	4.22	3.98	3.75
Merged-chr1-74773300-3	chr1	74772807	74773807	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1415.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	5.15	2.76	2.77	2.7	0.47	4.82	2.11	1.33	5.0
Merged-chr9-40783160-3	chr9	40782646	40783646	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-18127.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	185.35	207.35	109.14	129.55	128.76	112.53	196.45	268.4	129.28
Merged-chr19-8840550-3	chr19	8840071	8841071	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290823)	promoter-TSS (NM_001290823)	68.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	35.47	36.86	27.75	35.09	33.12	35.37	35.91	31.84	21.23
Merged-chr3-108151897-3	chr3	108151412	108152412	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3020.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	44.05	40.09	32.37	27.66	34.99	33.76	41.19	57.48	31.23
Merged-chr13-101918375-3	chr13	101917884	101918884	+	999.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150167.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	32.04	35.48	39.77	33.06	38.25	48.23	43.3	42.01	37.47
Merged-chr1-34439463-8	chr1	34438896	34439896	+	999.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178601)	promoter-TSS (NM_178601)	276.0	NM_027159	69668.0	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	114.41	140.08	120.24	136.29	144.15	110.92	148.92	147.24	92.43
Merged-chr1-164153011-2	chr1	164152518	164153518	+	999.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037987)	promoter-TSS (NR_037987)	-801.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	2.86	7.83	0.0	4.05	4.67	8.04	6.34	3.54	2.5
Merged-chr10-20077130-5	chr10	20076647	20077647	+	999.9091189999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 12 of 29)	intron (NM_008580, intron 12 of 29)	-71773.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	95.53	67.27	45.32	138.32	118.49	81.18	52.81	53.5	31.23
Merged-chrX-135742709-3	chrX	135742228	135743228	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026081)	promoter-TSS (NM_026081)	36.0	NM_001005385	67298.0	Mm.271980	NM_026081	ENSMUSG00000043384	Gprasp1	2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding	84.09	107.82	55.5	76.92	84.9	65.91	67.6	85.78	33.1
Merged-chr17-63492841-3	chr17	63492324	63493324	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7756.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	31.46	29.49	18.5	30.36	27.99	33.76	9.51	29.18	28.1
Merged-chr11-4536826-3	chr11	4536331	4537331	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	PB1D10|SINE|Alu	57984.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	105.26	146.07	80.47	80.97	100.3	81.18	83.44	99.05	50.59
Merged-chr10-42502786-3	chr10	42502270	42503270	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017472, intron 1 of 3)	intron (NM_017472, intron 1 of 3)	716.0	NM_017472	54198.0	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	374.7	402.73	338.53	304.97	345.22	262.04	327.42	336.93	247.94
Merged-chr5-123671203-3	chr5	123670710	123671710	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	13151.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	185.92	199.52	104.52	161.26	168.88	97.26	248.2	276.8	76.82
Merged-chr6-124478559-3	chr6	124478059	124479059	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13775.0	NM_153508	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	88.67	80.64	23.12	97.83	77.91	55.46	92.94	81.8	40.59
Merged-chr13-112386715-3	chr13	112386216	112387216	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77354.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	14.3	25.34	12.95	16.19	9.8	4.82	16.9	26.53	14.99
Merged-chr1-127242998-3	chr1	127242508	127243508	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	38022.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	96.68	100.91	80.47	127.52	146.95	92.44	142.59	141.49	75.57
Merged-chrX-50970119-3	chrX	50969614	50970614	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-27404.0	NM_001190332	385354.0	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	8.58	10.6	3.7	13.49	7.46	6.43	10.56	7.52	4.37
Merged-chr13-20133861-3	chr13	20133378	20134378	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	43371.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	33.18	42.39	42.55	30.36	28.46	38.58	24.29	24.32	23.11
Merged-chr10-22732409-3	chr10	22731904	22732904	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011603)	promoter-TSS (NM_011603)	-957.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	87.52	71.88	119.32	76.24	98.43	127.0	87.66	56.6	67.45
Merged-chr12-8509867-3	chr12	8509363	8510363	+	999.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9854.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	14.3	15.21	7.4	52.63	80.71	70.73	98.23	107.45	54.33
Merged-chr2-119476949-4	chr2	119476476	119477476	+	999.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026574, intron 1 of 35)	CpG	653.0	NM_026574	68142.0	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	336.94	270.02	160.02	361.65	221.59	240.33	314.74	258.23	159.25
Merged-chr4-133774941-5	chr4	133774523	133775523	+	999.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-21412.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	95.53	68.2	57.35	107.28	68.58	84.4	188.0	214.01	109.92
Merged-chr13-75840284-2	chr13	75839798	75840798	+	999.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	412.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	88.1	89.39	68.45	64.1	62.05	58.68	43.3	46.43	21.86
Merged-chr7-99159052-3	chr7	99158514	99159514	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026384, exon 5 of 8)	exon (NM_026384, exon 5 of 8)	-17870.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	22.88	9.68	3.7	16.19	6.53	6.43	9.51	4.86	8.74
Merged-chr16-8671678-3	chr16	8671187	8672187	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	CpG	466.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	36.61	44.7	40.7	63.42	51.32	82.79	70.76	47.31	48.71
Merged-chr1-106172596-3	chr1	106172078	106173078	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	709.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	72.08	49.76	60.12	83.66	61.58	83.59	58.09	39.35	51.21
Merged-chr3-69598982-3	chr3	69598470	69599470	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020026)	promoter-TSS (NM_020026)	-10.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	57.78	35.48	55.5	98.51	54.58	90.02	73.93	46.87	41.84
Merged-chr16-11282955-3	chr16	11282452	11283452	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28507.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	36.61	38.71	24.97	32.39	34.06	37.78	42.25	38.47	27.48
Merged-chr17-36218920-3	chr17	36218439	36219439	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-28788.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	10.87	4.61	7.4	11.47	10.26	4.82	6.34	8.84	12.49
Merged-chr8-83697516-3	chr8	83697011	83698011	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	1668.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	84.09	54.83	73.07	77.59	42.45	89.22	92.94	99.93	61.2
Merged-chr11-108248536-3	chr11	108248043	108249043	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	95345.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	40.04	27.65	12.95	34.41	19.59	19.29	52.81	29.18	14.99
Merged-chr12-32635215-3	chr12	32634686	32635686	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185149.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	84.09	66.81	62.9	62.07	71.84	38.58	12.67	8.4	7.49
Merged-chr15-97520173-3	chr15	97519657	97520657	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	185665.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	29.75	37.78	25.9	39.81	47.58	41.8	26.4	29.63	13.12
Merged-chr1-87813793-3	chr1	87813297	87814297	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 4 of 15)	intron (NM_009118, intron 4 of 15)	10117.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.57	11.98	1.85	4.72	5.13	4.82	1.06	0.44	3.75
Merged-chr17-85574770-1	chr17	85574270	85575270	+	999.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43626.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.58	4.61	1.85	14.17	7.46	8.04	7.39	5.31	7.49
Merged-chr13-21200208-3	chr13	21199724	21200724	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	20293.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	38.9	42.85	47.17	38.46	49.45	23.31	42.25	36.7	34.35
Merged-chr8-92875947-3	chr8	92875452	92876452	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 6 of 12)	intron (NM_001357375, intron 6 of 12)	20619.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	11.44	9.68	4.62	13.49	12.13	20.09	60.2	49.96	33.1
Merged-chr17-17393014-3	chr17	17392502	17393502	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 9 of 9)	ID_B1|SINE|B4	-9684.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	158.46	191.23	98.05	135.62	179.61	142.27	184.83	216.22	113.66
Merged-chr5-67450352-4	chr5	67449811	67450811	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-13587.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	26.89	25.34	11.1	52.63	59.71	46.62	36.97	21.22	18.11
Merged-chr13-60628015-3	chr13	60627512	60628512	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	25801.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	38.33	30.41	37.92	111.33	69.98	95.65	92.94	95.07	51.84
Merged-chr8-72162780-3	chr8	72162295	72163295	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023126, intron 1 of 7)	intron (NM_023126, intron 1 of 7)	1595.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	74.94	59.44	54.57	45.21	27.52	14.47	85.55	84.9	40.59
Merged-chr11-76202006-3	chr11	76201520	76202520	+	999.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	-36.0	NM_027773	116972.0	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	8.58	6.45	1.85	8.77	3.27	12.06	5.28	2.65	0.0
Merged-chr17-28800850-3	chr17	28800310	28801310	+	999.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081315)	promoter-TSS (NM_001081315)	-316.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	77.8	42.39	55.5	67.47	44.32	86.81	70.76	26.97	29.35
Merged-chr10-44071285-3	chr10	44070795	44071795	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66449.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	61.21	58.06	52.72	45.88	58.31	70.73	62.31	68.54	36.85
Merged-chr9-78489100-3	chr9	78488581	78489581	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	122.99	169.57	87.87	139.67	126.42	104.49	166.88	173.77	77.44
Merged-chr10-81482698-3	chr10	81482189	81483189	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311124)	promoter-TSS (NM_001311124)	20.0	NM_176954	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	12.59	1.84	1.85	6.07	0.93	3.22	4.22	0.88	1.25
Merged-chr11-71855341-3	chr11	71854848	71855848	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84774.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	37.18	46.08	26.82	38.46	47.12	19.29	40.14	44.22	19.98
Merged-chr4-155217562-3	chr4	155217078	155218078	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	4957.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	21.17	15.67	3.7	24.96	19.59	10.45	40.14	20.34	9.37
Merged-chr2-32089785-3	chr2	32089267	32090267	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	11.44	23.04	16.65	11.47	8.86	20.09	12.67	6.63	21.86
Merged-chr8-80874355-3	chr8	80873859	80874859	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	6120.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	44.05	26.73	31.45	58.7	32.66	40.19	31.69	11.05	15.61
Merged-chr5-67608324-3	chr5	67607819	67608819	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	436.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	8.58	4.15	3.7	6.75	5.6	1.61	10.56	4.86	3.75
Merged-chr10-93425869-3	chr10	93425376	93426376	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7231.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	11.44	1.84	3.7	4.72	2.8	1.61	5.28	0.88	5.0
Merged-chr11-21540274-3	chr11	21539752	21540752	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-29072.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	12.59	6.45	12.02	8.1	8.86	6.43	14.79	10.61	5.0
Merged-chr10-96185849-3	chr10	96185348	96186348	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40359.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	10.3	9.22	3.7	19.57	16.79	28.94	23.24	14.59	18.11
Merged-chr2-101797402-3	chr2	101796918	101797918	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	CpG	289.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	108.12	83.4	58.27	69.5	55.51	77.97	148.92	174.21	77.44
Merged-chr10-99203397-3	chr10	99202887	99203887	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59844.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	67.5	58.52	43.47	54.65	48.98	50.64	72.88	73.4	21.23
Merged-chr11-70239982-3	chr11	70239473	70240473	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173742)	promoter-TSS (NM_173742)	-121.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	259.71	239.15	164.64	266.51	289.24	166.38	268.27	256.9	139.89
Merged-chr11-21036385-3	chr11	21035888	21036888	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54936.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	41.76	27.19	12.95	33.74	18.19	3.22	28.52	17.69	19.36
Merged-chr19-29047944-3	chr19	29047452	29048452	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021299)	promoter-TSS (NM_021299)	-50.0	NM_021299	56248.0	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	38.9	26.26	20.35	56.0	48.52	52.25	81.33	47.75	36.85
Merged-chr13-119597776-3	chr13	119597299	119598299	+	999.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26020.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	30.32	27.19	7.4	29.69	34.99	36.97	14.79	14.59	23.73
Merged-chr9-41070988-4	chr9	41070448	41071448	+	999.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	8558.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	46.34	53.45	61.05	37.78	33.59	42.6	35.91	40.68	16.86
Merged-chrX-9272664-3	chrX	9272151	9273151	+	999.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023500)	promoter-TSS (NM_023500)	-133.0	NM_023500	22439.0	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	16.02	11.06	10.17	14.84	10.73	16.08	15.84	7.07	7.49
Merged-chr5-115491942-3	chr5	115491416	115492416	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7432.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	35.47	25.34	14.8	37.78	19.13	13.66	19.01	24.32	9.99
Merged-chr14-122056947-3	chr14	122056433	122057433	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22259.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	4.58	3.69	5.55	6.75	3.27	3.22	4.22	4.86	2.5
Merged-chr2-177957303-3	chr2	177956816	177957816	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282028)	promoter-TSS (NM_001282028)	-28.0	NM_001190302	665211.0	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	-	predicted gene 14326	protein-coding	24.03	17.51	23.12	29.01	30.32	38.58	45.42	26.09	18.74
Merged-chr4-150594513-3	chr4	150594013	150595013	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	URR1B|DNA|hAT-Charlie	57661.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	118.42	142.84	74.0	91.09	99.37	86.81	148.92	202.95	59.33
Merged-chr17-21679438-3	chr17	21678934	21679934	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001354753)	promoter-TSS (NM_001354753)	-443.0	NM_001354753	100310809.0	Mm.293030	NM_001354753		Gm10509	-	predicted gene 10509	protein-coding	58.92	54.83	36.07	45.21	38.72	54.66	69.71	69.86	66.2
Merged-chr6-99540845-3	chr6	99540353	99541353	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19860.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	17.16	24.42	1.85	14.84	8.86	3.22	15.84	15.03	11.24
Merged-chr11-80476784-3	chr11	80476294	80477294	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009871)	promoter-TSS (NM_009871)	-229.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	10.87	6.91	4.62	15.52	11.66	10.45	10.56	7.52	3.75
Merged-chr3-115682527-3	chr3	115682038	115683038	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	32517.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	35.47	29.95	2.77	62.75	35.45	46.62	46.47	21.22	17.49
Merged-chr6-55016326-3	chr6	55015790	55016790	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-21711.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	13.16	13.82	5.55	8.1	9.33	16.08	6.34	7.52	14.99
Merged-chr2-178416670-3	chr2	178416168	178417168	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081289, exon 2 of 4)	5' UTR (NM_001081289, exon 2 of 4)	2134.0	NM_001081289	71532.0	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	17.73	3.69	7.4	10.8	7.46	11.25	11.62	4.86	8.74
Merged-chr13-110941822-3	chr13	110941348	110942348	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38002.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	23.45	13.82	5.55	46.56	24.72	23.31	39.08	27.41	2.5
Merged-chr19-21461398-3	chr19	21460883	21461883	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	L1MB5|LINE|L1	11278.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	10.3	9.68	12.95	16.87	20.53	31.35	17.96	9.73	13.74
Merged-chr6-51471048-3	chr6	51470559	51471559	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355002)	promoter-TSS (NM_001355002)	-193.0	NM_001355002	12417.0	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	95.53	94.46	87.87	96.48	79.31	118.16	81.33	68.54	57.46
Merged-chr18-52684439-3	chr18	52683930	52684930	+	999.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9249.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	10.3	11.06	16.65	22.94	9.8	14.47	20.07	22.11	14.99
Merged-chr1-157553243-3	chr1	157552740	157553740	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159986, intron 14 of 25)	intron (NM_001159986, intron 14 of 25)	27070.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	5.15	3.69	18.5	4.72	2.8	3.22	5.28	4.42	3.75
Merged-chr6-70797955-3	chr6	70797429	70798429	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5754.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	6.29	5.53	3.7	11.47	5.6	1.61	4.22	5.31	1.25
Merged-chr19-36834783-3	chr19	36834282	36835282	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163635, intron 1 of 26)	CpG	550.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	274.59	201.82	166.49	351.53	185.67	168.8	313.69	173.33	93.05
Merged-chr12-24498649-3	chr12	24498096	24499096	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028341)	promoter-TSS (NR_028341)	15.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	80.09	70.04	101.74	74.22	75.11	126.19	76.05	60.58	66.2
Merged-chr16-55637013-3	chr16	55636483	55637483	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142252.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	34.9	41.47	42.55	49.93	38.25	26.53	49.64	53.06	34.35
Merged-chr4-46534695-3	chr4	46534225	46535225	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029077, intron 1 of 5)	intron (NM_029077, intron 1 of 5)	-1176.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	35.47	52.99	56.42	53.98	54.58	85.2	77.1	55.71	38.72
Merged-chr4-99224963-3	chr4	99224457	99225457	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 7 of 10)	intron (NM_175029, intron 7 of 10)	30810.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	54.92	92.16	42.55	65.45	82.57	52.25	128.85	108.33	50.59
Merged-chr2-45111268-3	chr2	45110766	45111766	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	128.0	NR_110572	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	210.52	209.2	119.32	226.71	170.74	155.13	246.09	246.29	132.4
Merged-chr11-69340641-4	chr11	69340104	69341104	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027827)	promoter-TSS (NR_027827)	-165.0	NR_027827	80515.0	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	88.67	39.63	44.4	85.01	74.17	33.76	73.93	42.01	24.36
Merged-chr11-44471188-3	chr11	44470701	44471701	+	999.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024475)	promoter-TSS (NM_024475)	-653.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	279.73	254.81	173.89	259.09	246.78	164.78	321.08	428.46	168.0
Merged-chr7-69971633-2	chr7	69971148	69972148	+	999.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366174.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	2.86	4.61	6.47	4.72	15.86	12.06	24.29	11.5	7.49
Merged-chr15-41832415-4	chr15	41831920	41832920	+	999.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	1462.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	90.38	129.48	89.72	102.56	108.7	111.73	108.79	146.36	81.19
Merged-chr17-86937977-3	chr17	86937472	86938472	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9915.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	9.15	5.99	5.55	9.45	6.53	6.43	6.34	2.21	5.0
Merged-chr16-33684443-3	chr16	33683925	33684925	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-41.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	137.29	132.71	126.72	143.71	81.64	90.83	147.87	118.06	76.82
Merged-chr14-54883288-3	chr14	54882793	54883793	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007537)	promoter-TSS (NM_007537)	-132.0	NM_007537	12050.0	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	67.5	52.07	47.17	86.36	49.92	69.13	54.92	67.21	51.84
Merged-chr6-86593640-3	chr6	86593132	86594132	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-34542.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	10.87	5.07	1.85	15.52	2.33	4.02	5.28	8.84	2.5
Merged-chr15-27876579-3	chr15	27876056	27877056	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	149292.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.86	14.75	8.32	11.47	11.2	9.65	14.79	11.5	6.25
Merged-chr1-45906812-3	chr1	45906306	45907306	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18788.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	36.04	48.38	36.07	40.48	37.32	53.85	43.3	49.52	33.1
Merged-chr8-80984087-3	chr8	80983583	80984583	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 9 of 9)	intron (NM_027554, intron 9 of 9)	30823.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	33.75	62.21	43.47	37.11	44.78	25.72	67.6	81.8	49.96
Merged-chr4-46555898-3	chr4	46555403	46556403	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	10537.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	129.86	107.82	105.44	135.62	90.5	126.19	92.94	81.36	49.96
Merged-chr11-69095943-3	chr11	69095435	69096435	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	342.66	403.19	277.49	388.64	374.61	319.1	311.57	378.94	239.82
Merged-chr11-84818203-3	chr11	84817705	84818705	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145433, intron 2 of 4)	intron (NM_145433, intron 2 of 4)	1310.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	52.63	56.22	74.92	52.63	59.25	79.58	65.48	80.47	58.08
Merged-chr1-6215419-3	chr1	6214916	6215916	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009826, intron 1 of 23)	intron (NM_009826, intron 1 of 23)	754.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	124.14	140.54	123.02	120.1	159.08	156.74	116.18	87.11	85.56
Merged-chr19-45843622-3	chr19	45843125	45844125	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-27562.0	NM_145703	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	34.9	27.65	27.75	18.89	26.59	17.68	22.18	42.01	15.61
Merged-chr2-173352383-3	chr2	173351837	173352837	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75804.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	36.61	39.17	48.1	51.28	28.46	60.28	38.02	39.35	36.85
Merged-chr9-121642670-3	chr9	121642180	121643180	+	999.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-36.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	17.73	7.37	10.17	14.84	21.93	8.04	25.35	18.57	5.0
Merged-chr4-138068318-2	chr4	138067836	138068836	+	999.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	70182.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	188.78	194.91	83.25	79.62	39.65	69.93	161.6	167.58	71.82
Merged-chr13-93428570-2	chr13	93428051	93429051	+	999.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71257.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	22.31	28.11	17.57	25.64	16.79	20.9	6.34	0.88	5.0
Merged-chr4-16119613-3	chr4	16119105	16120105	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44038.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	9.72	10.14	1.85	9.45	5.6	8.04	8.45	7.52	1.25
Merged-chr5-63875066-3	chr5	63874581	63875581	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	62586.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	9.15	6.45	3.7	18.89	17.26	16.08	21.12	15.92	16.24
Merged-chr8-92855414-3	chr8	92854931	92855931	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173014)	promoter-TSS (NM_173014)	98.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	244.84	274.63	256.21	192.29	188.47	262.04	282.0	281.66	185.48
Merged-chr6-108702804-3	chr6	108702315	108703315	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41881.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	15.45	6.91	10.17	16.19	5.6	12.06	19.01	4.42	4.37
Merged-chr12-32292979-3	chr12	32292475	32293475	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	-84326.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	112.12	161.27	108.22	156.53	156.28	177.64	157.37	209.59	110.54
Merged-chr12-40018279-3	chr12	40017761	40018761	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	19115.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	22.31	22.12	9.25	16.87	16.79	7.23	24.29	23.43	14.36
Merged-chr4-33261408-3	chr4	33260898	33261898	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12611.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	23.45	11.06	16.65	8.1	8.86	0.8	14.79	12.82	11.24
Merged-chr15-66454147-3	chr15	66453639	66454639	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019457, exon 5 of 12)	exon (NM_019457, exon 5 of 12)	46771.0	NM_019457	54562.0	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	8.01	14.75	9.25	8.77	10.73	9.65	16.9	13.27	5.0
Merged-chr2-167492408-3	chr2	167491912	167492912	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030743)	promoter-TSS (NM_030743)	-233.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	361.54	253.43	275.64	250.99	211.33	217.83	236.59	181.29	100.55
Merged-chr13-44518388-3	chr13	44517869	44518869	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78642.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	10.87	4.61	6.47	2.7	3.27	2.41	14.79	5.75	3.12
Merged-chr15-95797802-3	chr15	95797296	95798296	+	999.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	6953.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	104.11	101.37	89.72	134.27	75.11	127.0	109.84	87.55	89.93
Merged-chr8-71476652-4	chr8	71476145	71477145	+	999.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001294259)	TTS (NM_001294259)	7451.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	55.49	23.04	41.62	88.39	28.92	65.11	69.71	24.32	55.58
Merged-chr2-127378333-3	chr2	127377835	127378835	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15049.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	9.15	5.07	7.4	14.17	6.53	12.06	26.4	31.84	29.98
Merged-chr12-16875468-3	chr12	16874959	16875959	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19519.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	205.37	209.2	111.92	213.89	203.4	163.97	128.85	185.27	103.67
Merged-chr13-113606322-3	chr13	113605821	113606821	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	12243.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	48.62	32.72	35.15	29.69	15.86	21.7	26.4	17.69	24.98
Merged-chr10-99460948-3	chr10	99460471	99461471	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148200.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	171.04	181.09	80.47	147.76	149.75	151.11	136.25	180.85	74.32
Merged-chr2-30782600-3	chr2	30782117	30783117	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19120.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	28.03	29.03	22.2	56.68	38.72	40.19	41.19	32.28	28.73
Merged-chr14-103349565-3	chr14	103349056	103350056	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2756.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	21.17	18.43	5.55	16.87	24.72	16.08	11.62	21.67	12.49
Merged-chr11-63020837-3	chr11	63020349	63021349	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16715.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	10.87	10.14	22.2	18.22	19.59	32.96	30.63	11.5	26.23
Merged-chr6-89311699-3	chr6	89311213	89312213	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-25988.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	17.73	15.67	14.8	21.59	12.13	22.51	5.28	7.96	13.74
Merged-chr5-124031230-3	chr5	124030743	124031743	+	999.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	1017.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	115.55	127.64	99.89	107.95	117.56	89.22	163.71	189.25	74.32
Merged-chr1-36126343-2	chr1	36125849	36126849	+	999.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17964.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	2.86	6.45	0.92	130.22	61.11	116.55	123.57	114.52	60.58
Merged-chr7-88264883-3	chr7	88264404	88265404	+	999.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-13181.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	100.68	85.71	68.45	84.34	70.91	127.8	106.67	90.2	62.45
Merged-chr13-42049489-4	chr13	42048911	42049911	+	999.464294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2610.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	190.49	202.75	146.14	168.68	121.29	128.61	224.97	194.11	150.51
Merged-chr5-123138346-3	chr5	123137844	123138844	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3849.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	197.36	219.79	172.04	217.26	171.21	175.23	233.42	216.66	164.25
Merged-chr13-55418233-3	chr13	55417744	55418744	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021489, exon 14 of 14)	exon (NM_021489, exon 14 of 14)	-3012.0	NM_029303	75477.0	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	5.72	3.69	0.0	4.05	2.33	1.61	6.34	2.65	5.0
Merged-chr1-118388249-3	chr1	118387763	118388763	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359346)	promoter-TSS (NM_001359346)	-795.0	NM_001359329	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	129.86	182.47	123.02	130.9	136.69	142.27	141.53	202.95	116.16
Merged-chr4-116631127-3	chr4	116630623	116631623	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3172.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	29.17	19.81	6.47	42.51	31.72	32.15	30.63	21.22	9.99
Merged-chr1-128615122-3	chr1	128614627	128615627	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22828.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	41.76	72.34	39.77	59.38	66.71	77.16	17.96	14.15	33.1
Merged-chr2-153170642-3	chr2	153170148	153171148	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	9347.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	53.2	42.85	19.42	99.86	77.44	78.77	132.02	99.49	63.08
Merged-chr18-49982677-3	chr18	49982177	49983177	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	3250.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	48.05	35.48	37.92	23.62	18.19	9.65	14.79	26.97	9.37
Merged-chr18-36491761-3	chr18	36491242	36492242	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24063.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	16.59	6.91	12.95	30.36	14.93	16.08	16.9	13.27	7.49
Merged-chr15-59737409-3	chr15	59736902	59737902	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57557.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	10.3	6.45	1.85	10.12	4.67	6.43	9.51	3.54	3.75
Merged-chr15-5927982-3	chr15	5927479	5928479	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116725.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	22.88	41.47	18.5	33.74	32.19	32.15	27.46	28.3	26.23
Merged-chr4-88867559-3	chr4	88867061	88868061	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12640.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	34.32	26.73	12.95	17.54	14.93	7.23	31.69	15.92	3.75
Merged-chr18-75695356-3	chr18	75694834	75695834	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	2362.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	13.16	16.59	16.65	15.52	17.26	8.04	16.9	8.84	6.87
Merged-chr8-82382491-3	chr8	82381989	82382989	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	20097.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	66.93	76.49	50.87	68.15	55.51	46.62	98.23	110.98	40.59
Merged-chr10-96901342-3	chr10	96900853	96901853	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134415.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	8.01	10.14	9.25	12.14	8.4	17.68	7.39	7.96	9.99
Merged-chr2-75720789-3	chr2	75720280	75721280	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-16117.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	226.53	226.25	103.59	215.23	200.6	132.63	249.26	330.74	131.78
Merged-chr6-113078584-3	chr6	113078064	113079064	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	925.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	217.95	358.95	228.46	178.13	180.54	167.99	249.26	324.11	169.25
Merged-chr5-24039046-3	chr5	24038551	24039551	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8361.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	182.49	192.61	78.62	161.26	143.22	134.23	158.43	160.51	78.07
Merged-chr9-16238143-3	chr9	16237631	16238631	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	Lx10|LINE|L1	140100.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	5.15	21.66	3.7	25.64	15.39	12.06	24.29	15.92	13.74
Merged-chr14-34769198-3	chr14	34768716	34769716	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50920.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	26.31	13.82	18.5	45.88	26.12	26.53	45.42	36.7	8.12
Merged-chr11-50238646-3	chr11	50238189	50239189	+	999.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-157.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	46.91	36.86	24.97	55.33	51.32	63.5	61.26	57.48	62.45
Merged-chr8-120487999-5	chr8	120487537	120488537	+	999.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-829.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	202.51	190.76	203.49	186.22	131.56	200.95	186.94	179.96	141.77
Merged-chr10-20834744-3	chr10	20834264	20835264	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-109686.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	221.96	198.6	100.82	180.82	176.34	93.24	159.48	196.32	88.06
Merged-chr4-118152368-5	chr4	118151886	118152886	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161823, intron 12 of 21)	intron (NM_001161823, intron 12 of 21)	-17440.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	34.9	41.01	48.1	27.66	48.98	58.68	28.52	33.6	17.49
Merged-chr3-15243876-5	chr3	15243405	15244405	+	999.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88397.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	46.91	41.93	8.32	37.11	31.72	15.27	21.12	13.71	3.75
Merged-chr12-110436904-3	chr12	110436405	110437405	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10274.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	38.33	20.27	20.35	39.81	34.06	54.66	66.54	38.91	16.86
Merged-chr9-99072725-3	chr9	99072235	99073235	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 9 of 23)	intron (NM_029094, intron 9 of 23)	-37045.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	20.02	11.06	11.1	31.71	20.53	12.06	30.63	11.05	18.74
Merged-chr19-53330279-3	chr19	53329782	53330782	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008543)	promoter-TSS (NM_001008543)	-126.0	NM_001008543	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	62.35	47.46	26.82	74.22	57.85	115.75	61.26	51.73	46.22
Merged-chr6-122804647-3	chr6	122804144	122805144	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15540.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	8.58	8.75	0.92	12.82	8.4	8.04	5.28	4.86	13.12
Merged-chr3-87987048-3	chr3	87986551	87987551	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007529)	TTS (NM_007529)	13305.0	NM_007529	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	6.29	3.23	3.7	8.77	2.33	8.84	6.34	2.65	0.0
Merged-chr12-102333300-3	chr12	102332794	102333794	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	49653.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	27.46	17.97	21.27	30.36	23.79	33.76	16.9	9.29	16.24
Merged-chr11-48809030-3	chr11	48808542	48809542	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 3 of 5)	intron (NM_145377, intron 3 of 5)	5903.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	45.19	54.83	55.5	44.53	48.52	65.91	42.25	47.75	42.47
Merged-chr7-116457936-3	chr7	116457438	116458438	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14480.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	94.39	99.53	86.02	133.59	154.88	116.55	82.38	107.0	68.07
Merged-chr18-76933492-3	chr18	76932983	76933983	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025409, intron 1 of 2)	LTR10_RN|LTR|ERVK	3456.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	21.74	23.96	19.42	18.22	22.39	21.7	11.62	19.9	18.74
Merged-chr15-66820455-3	chr15	66819939	66820939	+	999.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	11390.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	13.16	15.67	21.27	29.01	20.99	24.11	16.9	12.38	15.61
Merged-chr2-153147894-3	chr2	153147406	153148406	+	999.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 11 of 12)	intron (NM_001172117, intron 11 of 12)	-13395.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	77.8	56.68	71.22	89.74	54.58	57.07	53.87	42.89	29.98
Merged-chr2-136915258-2	chr2	136914752	136915752	+	999.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	15901.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	13.73	5.99	0.92	8.77	7.46	2.41	13.73	3.54	8.74
Merged-chr16-24599960-3	chr16	24599452	24600452	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	70638.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	44.05	24.42	16.65	34.41	24.72	16.08	15.84	10.17	10.62
Merged-chr9-21321578-3	chr9	21321081	21322081	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	862.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	110.41	108.75	63.82	105.93	102.63	125.39	137.3	149.45	68.07
Merged-chrX-159912290-3	chrX	159911799	159912799	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	MIRb|SINE|MIR	-30394.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	37.76	33.64	18.5	44.53	38.72	49.03	32.74	42.01	23.73
Merged-chr11-98023312-3	chr11	98022812	98023812	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-685.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	122.42	114.27	127.64	115.38	80.71	131.02	179.55	179.52	83.06
Merged-chr2-83714966-3	chr2	83714472	83715472	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9425.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	10.87	12.44	9.25	11.47	15.39	8.84	13.73	8.84	8.12
Merged-chr4-131874106-3	chr4	131873591	131874591	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020587, intron 1 of 5)	CpG	452.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	323.78	295.82	269.16	224.68	211.33	176.03	287.28	191.9	177.37
Merged-chrX-143052137-3	chrX	143051642	143052642	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-47452.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	4.0	3.69	2.77	0.67	0.0	3.22	2.11	4.86	6.25
Merged-chr15-86166392-3	chr15	86165885	86166885	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-19343.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	59.49	56.68	46.25	147.76	61.58	88.42	136.25	128.67	43.72
Merged-chr16-55801781-3	chr16	55801271	55802271	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20367.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	31.46	40.55	35.15	53.3	36.85	33.76	32.74	39.35	23.73
Merged-chr17-34589950-3	chr17	34589416	34590416	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134116, exon 1 of 4)	5' UTR (NM_134116, exon 1 of 4)	110.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	76.66	79.25	69.37	55.33	47.12	84.4	108.79	76.05	75.57
Merged-chr2-32583609-3	chr2	32583133	32584133	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198191, exon 10 of 10)	3' UTR (NM_198191, exon 10 of 10)	-3445.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	6.86	6.91	4.62	12.82	3.27	4.82	6.34	3.98	1.25
Merged-chr15-74922491-3	chr15	74921995	74922995	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32556.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	88.67	127.64	123.02	40.48	46.65	49.03	239.75	313.94	133.02
Merged-chr7-132793711-1	chr7	132793211	132794211	+	999.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-6776.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	9.15	7.83	10.17	51.95	20.53	15.27	4.22	7.07	4.37
Merged-chr7-105767876-3	chr7	105767397	105768397	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 2 of 20)	intron (NM_001162943, intron 2 of 20)	-15662.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	70.93	55.29	28.67	51.95	46.18	53.05	94.0	75.61	29.35
Merged-chr2-145888142-3	chr2	145887654	145888654	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028724)	TTS (NM_028724)	-15087.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	147.59	152.52	111.92	180.15	132.95	117.35	164.76	172.89	99.3
Merged-chr1-181170508-3	chr1	181169975	181170975	+	999.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19544.0	NM_030131	98417.0	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	117.84	102.29	83.25	79.62	64.38	63.5	76.05	71.63	65.58
Merged-chr6-42376390-3	chr6	42375894	42376894	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045169, intron 2 of 3)	intron (NR_045169, intron 2 of 3)	-3126.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	19.45	15.21	8.32	8.1	6.53	11.25	6.34	4.86	5.0
Merged-chr4-140702651-3	chr4	140702135	140703135	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 2 of 12)	CpG-10575	1162.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	64.07	29.49	38.85	67.47	20.99	64.3	77.1	23.43	23.11
Merged-chr19-55227849-3	chr19	55227348	55228348	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 7 of 20)	intron (NM_001081076, intron 7 of 20)	13388.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	21.17	13.82	10.17	33.06	12.13	24.11	20.07	20.34	16.86
Merged-chr9-20459903-3	chr9	20459388	20460388	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011753, intron 1 of 9)	CpG	272.0	NM_011753	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	64.07	72.8	61.05	77.59	90.5	81.99	110.9	78.71	47.46
Merged-chr4-45981211-3	chr4	45980704	45981704	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355189, intron 1 of 16)	intron (NM_001355189, intron 1 of 16)	8373.0	NM_001355189	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	13.73	13.36	27.75	18.89	11.66	21.7	9.51	10.61	16.86
Merged-chr11-116628988-3	chr11	116628512	116629512	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1993.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	9.72	10.14	1.85	14.17	1.4	4.82	1.06	3.1	5.0
Merged-chr4-62641037-3	chr4	62640432	62641432	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 17 of 19)	intron (NM_019492, intron 17 of 19)	21260.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	41.19	23.5	7.4	31.71	28.46	24.11	30.63	35.82	8.12
Merged-chr16-87638288-3	chr16	87637804	87638804	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_Mur|LTR|ERVK	-60650.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	46.34	45.16	32.37	35.09	41.52	53.05	39.08	22.55	23.11
Merged-chr2-93459490-3	chr2	93459009	93460009	+	999.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	2342.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	181.34	141.0	108.22	149.79	84.44	49.83	94.0	71.19	36.85
Merged-chr9-108578697-3	chr9	108578210	108579210	+	999.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031392)	promoter-TSS (NM_031392)	-40.0	NM_031392	83669.0	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	17.73	9.22	27.75	11.47	20.99	25.72	8.45	10.61	16.24
Merged-chr6-83637869-3	chr6	83637380	83638380	+	999.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	18236.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	120.13	135.47	74.92	159.91	149.75	135.04	153.15	172.0	76.19
Merged-chr11-121741100-3	chr11	121740599	121741599	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38672.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	139.58	117.04	74.92	159.91	160.01	122.98	109.84	113.64	66.82
Merged-chr7-127008904-3	chr7	127008401	127009401	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	5693.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	189.92	189.38	128.57	219.96	169.81	141.47	133.08	143.26	73.69
Merged-chr6-38692235-3	chr6	38691733	38692733	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	29164.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	34.32	26.26	31.45	43.86	27.99	27.33	28.52	27.86	9.99
Merged-chr6-148990083-3	chr6	148989569	148990569	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43599.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	9.72	7.83	5.55	4.05	6.06	17.68	10.56	9.29	6.25
Merged-chr17-56031124-3	chr17	56030627	56031627	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	5510.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	21.74	21.66	22.2	35.76	23.79	23.31	15.84	14.15	9.37
Merged-chr13-119327082-3	chr13	119326602	119327602	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	81909.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	31.46	41.93	29.6	38.46	48.05	41.8	46.47	56.16	60.58
Merged-chr4-133574780-3	chr4	133574347	133575347	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172876, exon 1 of 7)	exon (NM_172876, exon 1 of 7)	102.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	207.08	146.99	112.84	228.73	195.47	142.27	123.57	122.92	89.31
Merged-chr2-160136994-3	chr2	160136495	160137495	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120342.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	10.87	20.74	24.05	17.54	16.79	21.7	12.67	11.05	19.36
Merged-chrX-164382136-3	chrX	164381628	164382628	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010216, intron 1 of 6)	intron (NM_010216, intron 1 of 6)	8606.0	NM_010216	14205.0	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	5.72	4.61	1.85	5.4	1.87	0.8	4.22	2.65	1.25
Merged-chr6-148539021-3	chr6	148538516	148539516	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75293.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	17.73	28.57	37.0	19.57	14.93	24.11	25.35	9.73	15.61
Merged-chr5-102056093-3	chr5	102055586	102056586	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	13835.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	157.89	167.73	88.8	153.16	111.5	125.39	168.99	218.43	116.16
Merged-chr19-61084661-3	chr19	61084157	61085157	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56183.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	13.73	9.22	1.85	18.22	10.73	14.47	6.34	2.21	2.5
Merged-chr3-40950798-3	chr3	40950294	40951294	+	999.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040399, intron 1 of 9)	CpG-9127	163.0	NM_001040399	214048.0	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	25.74	20.74	10.17	48.58	20.06	28.94	64.43	38.91	37.47
Merged-chr11-68458330-3	chr11	68458001	68459001	+	999.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	26376.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	122.99	107.82	100.82	153.84	108.7	107.71	95.06	56.6	63.08
Merged-chr11-106614453-3	chr11	106613954	106614954	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1524.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	173.9	116.58	96.2	213.89	142.29	128.61	182.72	275.47	103.67
Merged-chr6-101555396-3	chr6	101554908	101555908	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177511.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	31.46	20.27	21.27	62.75	44.32	41.8	31.69	28.74	6.87
Merged-chr15-73060256-3	chr15	73059743	73060743	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 1 of 17)	intron (NM_001164641, intron 1 of 17)	961.0	NM_001164641	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	105.26	174.18	130.42	87.71	108.23	114.14	58.09	69.42	53.08
Merged-chr9-86477026-3	chr9	86476529	86477529	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	L1MB2|LINE|L1	9875.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	59.49	70.5	37.0	29.01	25.19	27.33	48.58	60.13	56.21
Merged-chr11-63014860-3	chr11	63014352	63015352	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-10718.0	NR_126547	74884.0	Mm.363520	NR_126547	ENSMUSG00000087604	Cdrt4os1	4930452L02Rik	CMT1A duplicated region transcript 4, opposite strand 1	ncRNA	52.06	28.57	18.5	45.88	10.73	35.37	45.42	31.84	28.73
Merged-chr8-11459204-3	chr8	11458693	11459693	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-18736.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	292.89	363.56	218.29	311.72	284.57	277.31	358.05	399.72	186.11
Merged-chr4-6369189-3	chr4	6368682	6369682	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3502.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	105.26	129.48	86.95	120.77	118.49	82.79	116.18	150.78	74.94
Merged-chr13-74759358-3	chr13	74758871	74759871	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301153, intron 3 of 31)	intron (NM_001301153, intron 3 of 31)	11365.0	NM_001301156	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	10.3	6.45	0.92	3.37	6.06	3.22	8.45	5.75	9.37
Merged-chr4-141541023-3	chr4	141540521	141541521	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2424.0	NM_019763	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	122.99	82.94	93.42	161.26	54.58	114.94	129.91	120.71	84.94
Merged-chr2-31127397-3	chr2	31126896	31127896	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	RMER10A|LTR|ERVL	14612.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	53.2	47.0	47.17	46.56	34.52	45.01	65.48	41.12	41.22
Merged-chr2-170324912-3	chr2	170324411	170325411	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-31450.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	152.74	116.12	135.97	146.41	84.9	100.47	103.51	115.41	113.04
Merged-chr1-53848286-3	chr1	53847783	53848783	+	999.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	LTR31|LTR|ERV1	-1141.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	64.64	81.1	74.0	70.85	70.44	80.38	62.31	58.81	58.71
Merged-chr14-76328937-3	chr14	76328439	76329439	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77477.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	77.8	53.91	41.62	46.56	20.53	9.65	61.26	57.48	19.98
Merged-chr7-29134891-3	chr7	29134391	29135391	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145149)	promoter-TSS (NM_145149)	-42.0	NM_001174155	233046.0	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	10.3	5.07	5.55	7.42	3.73	3.22	21.12	14.15	11.24
Merged-chr12-111471332-3	chr12	111470823	111471823	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	14500.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	11.44	9.22	7.4	8.1	4.67	11.25	7.39	6.63	12.49
Merged-chr7-25477678-3	chr7	25477214	25478214	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039187)	promoter-TSS (NM_001039187)	-89.0	NM_001039187	26365.0	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	20.59	22.12	17.57	24.96	23.79	34.56	21.12	16.8	23.11
Merged-chr14-43922315-3	chr14	43921797	43922797	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053112)	TTS (NM_053112)	1071.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	71.51	58.06	31.45	53.3	24.26	28.94	73.93	42.45	44.34
Merged-chr9-97105591-3	chr9	97105108	97106108	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	5433.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	38.9	60.36	70.3	40.48	41.99	73.14	52.81	51.73	66.82
Merged-chr15-73177333-3	chr15	73176835	73177835	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	L3b|LINE|CR1	7612.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	42.9	29.49	22.2	47.23	20.06	20.09	33.8	27.86	16.86
Merged-chr6-50261781-3	chr6	50261300	50262300	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018769)	promoter-TSS (NM_018769)	-31.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	11.44	10.14	18.5	20.24	15.86	9.65	24.29	10.61	12.49
Merged-chr6-100800645-3	chr6	100800121	100801121	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-33017.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	7.44	5.07	3.7	14.84	6.06	6.43	9.51	9.73	7.49
Merged-chr2-132027620-3	chr2	132027141	132028141	+	999.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	2347.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.58	10.14	9.25	16.19	20.99	36.17	9.51	8.84	18.11
Merged-chr18-80554705-3	chr18	80554153	80555153	+	999.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10107.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	26.89	15.21	6.47	24.96	18.66	3.22	23.24	14.15	0.62
Merged-chr8-22861706-3	chr8	22861198	22862198	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 2 of 17)	intron (NM_001081149, intron 2 of 17)	2159.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	30.89	35.02	31.45	33.74	20.99	22.51	27.46	30.07	28.1
Merged-chr12-105031446-3	chr12	105030951	105031951	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028576)	promoter-TSS (NR_028576)	-102.0	NR_028576	100306943.0		NR_028576	ENSMUSG00000088789	Scarna13	U93	small Cajal body-specific RNA 1	ncRNA	78.37	110.59	70.3	79.62	84.44	86.01	66.54	81.36	56.83
Merged-chr8-45331024-3	chr8	45330533	45331533	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2163.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	22.31	45.16	2.77	29.01	9.33	16.08	32.74	23.88	23.11
Merged-chr1-144215473-3	chr1	144214973	144215973	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33631.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	29.17	28.57	43.47	20.24	21.93	21.7	28.52	46.87	27.48
Merged-chr19-55654615-3	chr19	55654129	55655129	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	(A)n|Simple_repeat|Simple_repeat	47575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	93.82	83.4	71.22	118.08	83.97	59.48	73.93	99.49	44.97
Merged-chr12-52328234-3	chr12	52327761	52328761	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152348.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	45.76	37.78	20.35	44.53	49.92	33.76	55.98	62.35	23.73
Merged-chr14-51093639-3	chr14	51093143	51094143	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	-2357.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	43.48	40.55	38.85	30.36	25.19	33.76	41.19	49.08	33.72
Merged-chr19-10948380-3	chr19	10947828	10948828	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023731, exon 1 of 4)	exon (NM_023731, exon 1 of 4)	938.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	233.4	281.08	209.96	218.61	235.59	188.09	273.55	311.73	146.76
Merged-chr8-104602910-3	chr8	104602436	104603436	+	999.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252628, intron 17 of 17)	intron (NM_001252628, intron 17 of 17)	11468.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	7.44	2.76	3.7	2.02	4.2	2.41	0.0	2.21	1.25
Merged-chr4-132382506-3	chr4	132381991	132382991	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 3 of 12)	B3|SINE|B2	-28805.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	49.2	44.24	39.77	58.03	43.85	56.27	49.64	58.81	42.47
Merged-chr11-116162380-1	chr11	116161880	116162880	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172571, intron 5 of 30)	intron (NM_172571, intron 5 of 30)	5798.0	NM_172571	217335.0	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	18.31	12.44	15.72	1.35	0.93	1.61	1.06	0.44	0.0
Merged-chr2-6647190-1	chr2	6646690	6647690	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 5 of 15)	Tigger7|DNA|TcMar-Tigger	74472.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	10.87	16.13	25.9	3.37	4.67	4.02	35.91	16.36	13.12
Merged-chr1-106371815-1	chr1	106371315	106372315	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 12 of 16)	intron (NM_133821, intron 12 of 16)	174816.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	10.3	9.22	4.62	13.49	13.06	16.08	12.67	9.29	1.25
Merged-chr8-105374804-3	chr8	105374314	105375314	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-567.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	13.73	3.69	7.4	10.8	5.6	8.04	11.62	13.71	15.61
Merged-chr18-12740710-3	chr18	12740161	12741161	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181731)	promoter-TSS (NM_181731)	-694.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	75.51	85.25	93.42	78.94	77.44	112.53	127.8	156.09	99.92
Merged-chr18-65497159-3	chr18	65496637	65497637	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66140.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	75.51	97.69	105.44	111.33	72.31	108.51	15.84	14.15	22.48
Merged-chr18-32311969-3	chr18	32311486	32312486	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65231.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	6.29	4.15	1.85	6.07	3.73	3.22	6.34	5.31	4.37
Merged-chr5-102481572-3	chr5	102481057	102482057	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029270, exon 1 of 10)	5' UTR (NM_029270, exon 1 of 10)	166.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	10.3	3.23	1.85	8.77	8.4	4.82	11.62	4.42	13.12
Merged-chr7-24586999-1	chr7	24586499	24587499	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023154)	promoter-TSS (NM_023154)	-544.0	NM_023154	66071.0	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	2.29	0.46	4.62	2.02	1.87	4.02	4.22	0.0	2.5
Merged-chr15-6578124-3	chr15	6577624	6578624	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1723.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	114.98	79.72	73.07	87.04	48.98	86.01	103.51	81.36	65.58
Merged-chr6-88033697-3	chr6	88033205	88034205	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	11312.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	47.48	35.94	27.75	56.68	18.66	22.51	57.03	17.24	14.36
Merged-chr11-34034972-3	chr11	34034474	34035474	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MER3|DNA|hAT-Charlie	-11954.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	173.33	124.87	111.92	160.58	111.5	123.78	149.98	157.41	96.8
Merged-chr7-27302346-1	chr7	27301846	27302846	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31302.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	1.14	2.76	0.0	2.7	1.4	1.61	4.22	3.98	5.0
Merged-chr12-24831596-3	chr12	24831127	24832127	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083341)	promoter-TSS (NM_001083341)	28.0	NM_001083341	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	13.16	5.99	7.4	17.54	3.73	8.04	3.17	0.88	0.0
Merged-chr11-107335313-3	chr11	107334793	107335793	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	135427.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	90.38	86.17	84.17	149.79	134.82	83.59	107.73	131.77	81.19
Merged-chr14-21657536-1	chr14	21657036	21658036	+	999.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 12 of 16)	intron (NM_017479, intron 12 of 16)	57040.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	8.58	3.23	1.85	9.45	3.73	1.61	1.06	3.98	5.62
Merged-chr14-17905794-1	chr14	17905294	17906294	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-75850.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	7.44	7.83	5.55	15.52	7.46	1.61	6.34	5.75	15.61
Merged-chr18-80005120-3	chr18	80004622	80005622	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41773.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	12.01	4.61	5.55	8.1	7.0	10.45	7.39	4.86	3.75
Merged-chr1-172504086-1	chr1	172503586	172504586	+	999.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	(GGGTG)n|Simple_repeat|Simple_repeat	3840.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	23.45	9.22	5.55	5.4	3.27	8.84	16.9	7.52	6.87
Merged-chr19-23758900-4	chr19	23758374	23759374	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-2.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	41.19	36.4	34.22	37.78	31.72	55.46	67.6	42.01	46.84
Merged-chr1-173423072-3	chr1	173422582	173423582	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 1 of 8)	intron (NM_001013779, intron 1 of 8)	2478.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	26.31	19.81	14.8	25.64	30.32	20.9	27.46	21.67	11.87
Merged-chr13-76056429-3	chr13	76055913	76056913	+	999.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175495, exon 1 of 1)	exon (NM_175495, exon 1 of 1)	583.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	1.72	4.15	0.0	4.72	4.2	8.04	3.17	3.1	4.37
Merged-chr17-62527639-3	chr17	62527104	62528104	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353713.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	8.58	7.37	11.1	4.72	7.46	1.61	7.39	6.63	3.75
Merged-chr12-3780492-3	chr12	3779990	3780990	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26490.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	50.34	50.23	55.5	85.69	81.17	88.42	76.05	92.86	29.35
Merged-chr11-120957941-3	chr11	120957444	120958444	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030696, exon 6 of 6)	exon (NM_030696, exon 6 of 6)	8877.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	21.74	11.98	25.9	10.12	12.6	27.33	27.46	20.78	19.36
Merged-chr11-97988907-3	chr11	97988381	97989381	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152188)	TTS (NR_152188)	-2435.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	151.02	122.11	101.74	157.21	159.55	136.64	151.03	202.95	99.3
Merged-chr9-45953609-3	chr9	45953099	45954099	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152206)	promoter-TSS (NR_152206)	-387.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	168.18	164.96	91.57	157.88	159.55	135.84	147.87	172.45	68.07
Merged-chr4-63408898-3	chr4	63408376	63409376	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5431.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	23.45	21.66	9.25	29.69	11.66	12.86	25.35	10.17	12.49
Merged-chr5-105627290-3	chr5	105626804	105627804	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72665.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	61.21	40.09	32.37	39.81	18.66	18.49	29.57	24.76	13.74
Merged-chr3-139012579-3	chr3	139012095	139013095	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286759, intron 4 of 14)	intron (NM_001286759, intron 4 of 14)	62606.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	22.31	27.65	14.8	15.52	21.46	24.92	28.52	21.67	9.99
Merged-chr12-25648843-3	chr12	25648349	25649349	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	519675.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.15	3.69	9.25	9.45	2.8	3.22	6.34	1.33	8.74
Merged-chr17-32924846-3	chr17	32924329	32925329	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130882, exon 13 of 13)	exon (NM_130882, exon 13 of 13)	-7473.0	NM_001357788	64385.0	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	24.03	15.21	21.27	8.1	15.86	10.45	20.07	8.84	18.11
Merged-chr12-28654430-3	chr12	28653916	28654916	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286865, intron 3 of 7)	intron (NM_001286865, intron 3 of 7)	4814.0	NM_001286865	19819.0	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	24.6	36.86	29.6	27.66	13.06	28.13	41.19	58.37	27.48
Merged-chr5-43218336-3	chr5	43217842	43218842	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-15121.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	18.31	11.52	14.8	26.31	31.26	48.23	26.4	19.9	17.49
Merged-chr10-40066653-3	chr10	40066142	40067142	+	998.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-41374.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	43.48	47.0	26.82	82.32	49.45	49.03	46.47	38.47	36.22
Merged-chrX-152016878-3	chrX	152016387	152017387	+	998.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025660)	promoter-TSS (NM_025660)	459.0	NM_019710	24061.0	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	112.12	115.66	85.1	81.64	102.63	100.47	89.78	116.29	63.7
Merged-chr11-95292166-2	chr11	95291672	95292672	+	998.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	18074.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	6.86	7.83	5.55	39.81	39.65	31.35	21.12	35.37	17.49
Merged-chr18-35918416-3	chr18	35917917	35918917	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46413.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	7.44	4.61	3.7	6.07	4.67	2.41	9.51	3.54	3.75
Merged-chr6-50378653-3	chr6	50378163	50379163	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	4174.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	220.81	222.1	136.89	166.66	122.69	90.02	176.38	201.63	93.05
Merged-chr2-181289241-3	chr2	181288746	181289746	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1280.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	213.95	260.8	159.09	216.58	205.26	206.57	317.91	399.28	188.61
Merged-chr11-98660666-3	chr11	98660152	98661152	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3699.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	14.87	10.6	5.55	10.12	7.46	9.65	11.62	8.4	5.62
Merged-chr2-142712962-3	chr2	142712468	142713468	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081133, exon 19 of 26)	exon (NM_001081133, exon 19 of 26)	188496.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	9.15	8.29	12.02	11.47	7.46	9.65	10.56	12.38	9.99
Merged-chr9-100876151-3	chr9	100875654	100876654	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 14 of 33)	intron (NM_009282, intron 14 of 33)	158730.0	NM_001311149	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	8.01	11.98	7.4	16.87	7.0	6.43	9.51	9.73	9.99
Merged-chr7-130943388-3	chr7	130942890	130943890	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019564, intron 1 of 8)	intron (NM_019564, intron 1 of 8)	7187.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	9.72	6.91	4.62	3.37	2.8	2.41	5.28	3.98	2.5
Merged-chr11-22815409-3	chr11	22814918	22815918	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	44317.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	59.49	63.59	51.8	45.88	53.18	59.48	62.31	62.35	43.09
Merged-chr13-55727412-3	chr13	55726891	55727891	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028281)	promoter-TSS (NM_028281)	23.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	117.27	117.5	130.42	91.76	86.3	136.64	119.35	98.16	109.29
Merged-chr11-59165868-3	chr11	59165387	59166387	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2142.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	63.5	55.29	33.3	47.23	27.99	28.94	30.63	21.67	32.48
Merged-chr3-136898918-3	chr3	136898421	136899421	+	998.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	228855.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	13.73	9.22	11.1	21.59	15.39	15.27	34.85	20.78	23.11
Merged-chr18-60381407-3	chr18	60380903	60381903	+	998.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021792, intron 2 of 2)	MTC|LTR|ERVL-MaLR	5374.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	42.33	47.92	30.52	28.34	21.46	54.66	35.91	26.09	39.35
Merged-chr7-24299537-3	chr7	24299047	24300047	+	998.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009561)	promoter-TSS (NM_009561)	2.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	16.59	13.82	7.4	8.77	20.06	31.35	15.84	7.96	15.61
Merged-chr6-108477764-2	chr6	108477248	108478248	+	998.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	L2c|LINE|L2	-11995.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	202.51	217.03	137.82	238.85	230.92	216.22	20.07	28.74	18.74
Merged-chr3-55978532-2	chr3	55978032	55979032	+	998.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 30 of 57)	L2|LINE|L2	131427.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	2.86	1.84	1.85	3.37	2.33	0.0	3.17	4.86	1.25
Merged-chr7-81571750-2	chr7	81571228	81572228	+	998.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001004185, exon 1 of 10)	exon (NM_001004185, exon 1 of 10)	436.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	292.89	281.54	300.61	213.21	211.33	180.85	204.9	183.5	160.5
Merged-chr9-48418150-1	chr9	48417650	48418650	+	998.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36194.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	2.86	2.76	1.85	2.02	5.13	1.61	138.36	109.22	95.55
Merged-chr6-88813110-3	chr6	88812592	88813592	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166249, intron 5 of 7)	intron (NM_001166249, intron 5 of 7)	28843.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	6.86	4.61	0.92	6.75	3.27	0.0	8.45	1.33	1.25
Merged-chr5-120605868-3	chr5	120605378	120606378	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	6711.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	18.31	6.91	15.72	16.19	7.0	19.29	20.07	7.96	6.25
Merged-chr12-16870987-3	chr12	16870454	16871454	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24024.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	155.6	161.74	144.29	171.38	114.76	150.31	86.61	80.03	53.71
Merged-chr12-28727257-3	chr12	28726754	28727754	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	23140.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	50.91	79.25	40.7	84.34	89.57	66.71	108.79	110.54	51.21
Merged-chr9-65827724-3	chr9	65827218	65828218	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172536)	promoter-TSS (NM_172536)	-154.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	73.79	52.99	41.62	85.01	34.99	76.36	67.6	30.51	29.98
Merged-chr18-9495179-3	chr18	9494680	9495680	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-45026.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.3	13.36	3.7	31.04	32.66	3.22	23.24	13.71	12.49
Merged-chr5-137830397-3	chr5	137829881	137830881	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 3 of 6)	intron (NM_153510, intron 3 of 6)	5897.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	52.63	56.22	68.45	70.17	49.92	55.46	61.26	72.52	54.96
Merged-chr5-134176604-4	chr5	134176068	134177068	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033572, exon 1 of 11)	exon (NM_033572, exon 1 of 11)	199.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	140.73	100.45	133.19	190.27	135.75	167.99	196.45	122.48	110.54
Merged-chr6-124671117-3	chr6	124670614	124671614	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	8010.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	44.05	23.96	30.52	64.1	41.05	32.15	27.46	30.95	5.0
Merged-chr13-21734269-3	chr13	21733767	21734767	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-767.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	12.01	5.07	7.4	9.45	9.33	4.82	17.96	14.59	16.24
Merged-chr15-86161122-3	chr15	86160619	86161619	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 3 of 12)	L1M4|LINE|L1	-24609.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	32.61	15.67	6.47	29.69	16.33	32.96	31.69	18.13	12.49
Merged-chr4-151108597-3	chr4	151108090	151109090	+	998.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 11 of 23)	CpG	19020.0	NM_001308446	105704528.0	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	5.15	1.38	1.85	6.75	5.13	4.82	2.11	1.77	0.0
Merged-chr15-64057152-3	chr15	64056682	64057682	+	998.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	2582.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	66.36	57.14	45.32	50.6	50.38	53.05	58.09	47.75	42.47
Merged-chr9-32478878-3	chr9	32478378	32479378	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	62574.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	73.22	72.34	58.27	59.38	62.51	59.48	38.02	45.54	43.09
Merged-chr1-34851758-3	chr1	34851267	34852267	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	1778.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	100.68	113.81	82.32	151.14	173.07	124.59	198.56	215.78	113.66
Merged-chr7-141309326-3	chr7	141308837	141309837	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	17331.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	54.35	61.28	33.3	83.66	83.51	54.66	94.0	96.39	38.1
Merged-chr4-141239519-3	chr4	141239023	141240023	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3361.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	6.86	2.3	1.85	6.75	3.27	1.61	1.06	1.77	5.0
Merged-chr6-31284673-3	chr6	31284173	31285173	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040262, intron 2 of 5)	intron (NR_040262, intron 2 of 5)	64322.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	28.6	41.01	31.45	49.93	59.71	39.39	36.97	38.47	36.22
Merged-chr2-103785949-3	chr2	103785453	103786453	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	intron (NM_001111292, intron 1 of 16)	11125.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	28.03	37.78	35.15	31.04	39.65	27.33	38.02	39.35	24.98
Merged-chr3-115985639-3	chr3	115985133	115986133	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 5 of 10)	intron (NM_023214, intron 5 of 10)	5731.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	19.45	32.72	31.45	29.01	26.59	28.94	34.85	29.18	24.98
Merged-chr3-137865207-3	chr3	137864704	137865704	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001316995, exon 2 of 5)	exon (NM_001316995, exon 2 of 5)	717.0	NM_016750	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	104.69	98.61	97.12	89.74	50.38	79.58	77.1	75.61	98.68
Merged-chr18-70643779-3	chr18	70643292	70644292	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75500.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	54.92	67.27	58.27	64.1	59.71	71.54	128.85	128.23	61.83
Merged-chr19-46690040-3	chr19	46689538	46690538	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	132.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	28.03	26.26	31.45	31.04	27.99	28.94	49.64	29.63	18.74
Merged-chr16-33892184-3	chr16	33891696	33892696	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	62531.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	151.02	126.72	105.44	158.56	153.01	143.88	167.93	210.91	98.05
Merged-chr5-130853533-3	chr5	130853051	130854051	+	998.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	404759.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	18.88	28.11	29.6	31.04	27.52	36.17	26.4	34.93	23.11
Merged-chr11-106461370-3	chr11	106460862	106461862	+	998.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	26434.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	83.52	69.58	87.87	82.32	36.85	45.01	107.73	113.19	42.47
Merged-chr17-3082999-4	chr17	3082539	3083539	+	998.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	B1_Mus1|SINE|Alu	1144.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	42.33	59.9	10.17	40.48	50.85	27.33	35.91	19.9	20.61
Merged-chr1-14823401-3	chr1	14822896	14823896	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67430.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	21.17	28.11	20.35	23.62	25.19	22.51	21.12	28.74	24.36
Merged-chr3-36857738-3	chr3	36857254	36858254	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5352.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	19.45	23.04	30.52	21.59	16.79	19.29	26.4	18.57	19.36
Merged-chr15-27659794-3	chr15	27659274	27660274	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 5 of 6)	intron (NM_198301, intron 5 of 6)	21768.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	19.45	20.27	14.8	14.17	20.06	37.78	6.34	11.05	8.74
Merged-chr9-51977600-3	chr9	51977086	51978086	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13984.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	2.29	1.38	11.1	5.4	1.4	0.0	2.11	1.77	0.0
Merged-chr3-57651711-3	chr3	57651204	57652204	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	-20.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	21.74	23.04	34.22	51.28	43.85	46.62	42.25	30.95	27.48
Merged-chr11-74576025-3	chr11	74575516	74576516	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	14142.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	6.29	5.99	21.27	6.07	2.33	4.82	2.11	7.52	3.75
Merged-chr7-122924415-3	chr7	122923897	122924897	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	46062.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	50.91	40.09	43.47	47.23	20.53	35.37	46.47	43.77	27.48
Merged-chr15-89373816-6	chr15	89373246	89374246	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111288)	promoter-TSS (NM_001111288)	72.0	NM_001111288	100126824.0	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	112.12	131.32	114.69	136.97	156.28	186.48	164.76	132.65	77.44
Merged-chr3-136230830-3	chr3	136230324	136231324	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 6 of 16)	intron (NM_001033350, intron 6 of 16)	95242.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	21.74	15.67	7.4	18.22	9.33	12.06	6.34	16.8	12.49
Merged-chr2-38797280-3	chr2	38796798	38797798	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-12783.0	NM_001159549	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	2.29	4.15	3.7	4.05	0.47	3.22	2.11	1.77	4.37
Merged-chr7-18958128-3	chr7	18957591	18958591	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29433.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	13.73	11.52	19.42	24.96	10.73	12.06	13.73	8.4	13.74
Merged-chr1-136018039-3	chr1	136017519	136018519	+	998.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160146)	promoter-TSS (NM_001160146)	18.0	NM_025439	66241.0	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	4.58	6.45	7.4	15.52	8.86	13.66	7.39	4.86	8.12
Merged-chr10-93161625-5	chr10	93160994	93161994	+	998.679993	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	CpG	618.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	348.95	326.24	314.48	381.22	261.71	353.67	438.32	375.84	254.18
Merged-chr2-84627434-3	chr2	84626943	84627943	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22037.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	83.52	102.29	83.25	105.93	81.64	123.78	96.11	91.53	62.45
Merged-chr12-73880689-3	chr12	73880178	73881178	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20646.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	17.73	26.26	35.15	18.89	16.33	22.51	29.57	22.55	24.98
Merged-chr1-71798802-3	chr1	71798277	71799277	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-89335.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	7.44	9.22	1.85	8.1	7.93	8.84	14.79	9.29	3.75
Merged-chr8-108995147-3	chr8	108994648	108995648	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58288.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	74.94	76.95	27.75	68.82	53.18	44.21	73.93	85.34	48.09
Merged-chrX-12252400-5	chrX	12251883	12252883	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92028.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	13.73	17.51	12.95	20.24	27.52	20.9	23.24	26.97	23.11
Merged-chr3-83875291-3	chr3	83874791	83875791	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-33683.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	37.18	49.3	60.12	57.35	41.52	79.58	48.58	58.37	58.71
Merged-chr12-102394631-3	chr12	102394135	102395135	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 13 of 13)	intron (NM_011175, intron 13 of 13)	45178.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	22.88	27.65	13.87	40.48	26.59	36.97	26.4	20.34	16.86
Merged-chr2-75702021-3	chr2	75701520	75702520	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	2643.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	106.97	94.92	51.8	141.69	131.56	88.42	164.76	159.18	75.57
Merged-chr10-117905866-3	chr10	117905377	117906377	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19582.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	176.76	173.25	144.29	257.07	207.13	188.09	234.47	290.5	147.39
Merged-chr4-136031434-3	chr4	136030928	136031928	+	998.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9779.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	119.56	138.7	107.29	95.14	109.16	115.75	107.73	129.11	103.05
Merged-chr17-83514443-5	chr17	83513941	83514941	+	998.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159529)	promoter-TSS (NM_001159529)	-108.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	236.83	284.3	156.32	240.2	277.57	204.97	267.21	310.4	146.14
Merged-chr2-28496855-3	chr2	28496361	28497361	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139197)	promoter-TSS (NM_139197)	-30.0	NM_139197	227671.0	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	63.5	83.4	92.5	56.68	67.18	122.98	96.11	107.45	76.19
Merged-chr16-49165960-3	chr16	49165456	49166456	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166210, intron 33 of 40)	intron (NM_001166210, intron 33 of 40)	108470.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	22.31	10.14	7.4	28.34	17.26	11.25	17.96	10.17	10.62
Merged-chr4-145257517-3	chr4	145257015	145258015	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10645.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	75.51	82.48	56.42	75.57	60.18	61.09	63.37	46.43	51.84
Merged-chr11-11774179-3	chr11	11773687	11774687	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34775.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	18.88	30.87	11.1	18.89	16.33	20.9	19.01	15.03	19.36
Merged-chr3-142493678-3	chr3	142493158	142494158	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3276.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	72.08	50.69	62.9	45.88	26.59	25.72	67.6	61.9	46.84
Merged-chr4-72401414-3	chr4	72400895	72401895	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	200151.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	8.58	12.44	7.4	9.45	9.8	21.7	10.56	6.63	4.37
Merged-chr2-136921149-3	chr2	136920661	136921661	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	21810.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	9.72	9.68	0.0	21.59	13.53	14.47	6.34	9.29	7.49
Merged-chr12-69513398-3	chr12	69512902	69513902	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37852.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	26.31	27.65	20.35	21.59	20.06	23.31	66.54	64.56	31.85
Merged-chr14-76429077-3	chr14	76428569	76429569	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	13248.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	17.73	10.14	5.55	20.92	19.13	12.06	10.56	4.86	9.99
Merged-chr8-13601131-6	chr8	13600617	13601617	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 4 of 23)	L1MC|LINE|L1	-38656.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	120.13	100.45	60.12	101.21	73.71	85.2	82.38	78.26	41.84
Merged-chr8-104118078-3	chr8	104117572	104118572	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	-12199.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	32.61	27.65	28.67	36.43	20.99	36.17	46.47	34.05	36.85
Merged-chr1-86233994-3	chr1	86233487	86234487	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	-69234.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	21.17	20.74	14.8	43.18	45.72	23.31	15.84	16.8	17.49
Merged-chr4-122838594-3	chr4	122838105	122839105	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 1 of 8)	L2b|LINE|L2	2378.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	26.31	27.65	18.5	39.81	29.39	29.74	34.85	38.03	14.99
Merged-chr2-180745442-3	chr2	180744956	180745956	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20117.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	1.72	1.84	0.0	4.05	0.47	1.61	3.17	1.33	3.12
Merged-chr18-80046859-3	chr18	80046363	80047363	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053117)	promoter-TSS (NM_053117)	-32.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	3.43	5.07	0.0	8.77	4.67	3.22	8.45	1.77	1.87
Merged-chr1-106933885-3	chr1	106933385	106934385	+	998.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027971)	promoter-TSS (NM_027971)	-564.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	16.02	22.12	18.5	16.87	15.86	16.88	12.67	20.34	18.11
Merged-chr16-30510818-3	chr16	30510527	30511527	+	998.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172614)	TTS (NM_172614)	39551.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	342.66	357.11	223.84	390.66	395.13	252.39	208.07	216.66	121.78
Merged-chr5-123058989-2	chr5	123058483	123059483	+	998.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11967.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	80.09	82.48	64.75	107.28	125.49	65.91	50.7	41.12	35.6
Merged-chr17-91284117-2	chr17	91283614	91284614	+	998.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191312.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	10.3	13.82	9.25	16.19	18.19	24.11	26.4	12.82	20.61
Merged-chr16-30008710-3	chr16	30008182	30009182	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033631)	promoter-TSS (NR_033631)	15.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	70.93	44.7	92.5	78.27	39.19	81.99	89.78	58.81	38.72
Merged-chr8-105835511-3	chr8	105835010	105836010	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024445, intron 2 of 15)	intron (NM_024445, intron 2 of 15)	7766.0	NM_024445	72236.0	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	8.01	9.68	11.1	10.12	6.53	11.25	3.17	2.21	2.5
Merged-chr12-17770771-3	chr12	17770252	17771252	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	79943.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	20.02	21.2	29.6	29.69	20.06	25.72	25.35	19.01	12.49
Merged-chr12-85437255-3	chr12	85436731	85437731	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36659.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	47.48	37.78	17.57	51.95	40.59	24.11	28.52	25.2	25.61
Merged-chr15-58616904-3	chr15	58616409	58617409	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201441.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	160.75	116.58	76.77	145.74	102.17	96.45	122.52	142.38	56.83
Merged-chr1-191248681-3	chr1	191248158	191249158	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24204.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	62.35	38.71	44.4	33.74	34.99	35.37	58.09	59.25	34.35
Merged-chr17-14826894-3	chr17	14826394	14827394	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175173, intron 24 of 24)	intron (NM_175173, intron 24 of 24)	116230.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	7.44	9.22	11.1	3.37	2.33	6.43	22.18	11.05	6.87
Merged-chr19-32906250-3	chr19	32905740	32906740	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148663.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	47.48	69.12	64.75	51.28	39.19	60.28	50.7	45.99	51.84
Merged-chr6-88906919-3	chr6	88906437	88907437	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 2 of 11)	intron (NM_011906, intron 2 of 11)	4686.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	11.44	8.29	5.55	15.52	3.27	17.68	11.62	5.31	3.12
Merged-chr8-71291041-3	chr8	71290551	71291551	+	998.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001142323, exon 2 of 39)	exon (NM_001142323, exon 2 of 39)	18337.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	68.07	45.16	40.7	78.27	71.84	73.14	26.4	35.82	34.97
Merged-chr3-79161413-4	chr3	79160957	79161957	+	998.535706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15582.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	135.58	112.43	70.3	182.85	195.47	109.32	133.08	130.44	48.71
Merged-chr1-54585409-3	chr1	54584947	54585947	+	998.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27763.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	37.18	36.4	30.52	39.81	33.12	56.27	45.42	46.87	39.35
Merged-chr17-42457688-2	chr17	42457190	42458190	+	998.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	MTC|LTR|ERVL-MaLR	141090.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.57	1.84	0.0	4.72	1.87	2.41	15.84	12.38	6.87
Merged-chr14-103816803-2	chr14	103816302	103817302	+	998.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	26899.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	17.16	7.37	0.0	31.04	14.93	23.31	6.34	5.31	7.49
Merged-chr2-46360520-3	chr2	46359999	46360999	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	663894.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	21.17	21.66	12.95	29.01	14.93	23.31	23.24	35.37	24.98
Merged-chr9-74953456-2	chr9	74952936	74953936	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113283, intron 1 of 12)	intron (NM_001113283, intron 1 of 12)	383.0	NM_001113283	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	87.52	73.26	69.37	101.21	118.49	90.83	124.63	110.54	86.81
Merged-chr2-130840089-3	chr2	130839612	130840612	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311147)	promoter-TSS (NM_001311147)	33.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	21.74	11.52	24.97	29.01	14.93	36.97	16.9	10.61	8.74
Merged-chr18-35707943-3	chr18	35707439	35708439	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4795.0	NM_029669	76594.0	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	6.29	9.68	11.1	12.82	8.4	20.9	19.01	11.94	12.49
Merged-chr16-91452751-3	chr16	91452257	91453257	+	998.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12347.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	127.57	119.8	55.5	126.17	95.17	82.79	102.45	154.76	81.19
Merged-chr14-20827621-3	chr14	20827107	20828107	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9055.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	129.86	137.77	120.24	93.11	66.24	86.81	149.98	176.87	120.53
Merged-chr4-43499652-3	chr4	43499156	43500156	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013377, exon 4 of 12)	5' UTR (NM_001013377, exon 4 of 12)	6291.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	50.34	39.17	23.12	41.83	33.59	36.17	35.91	40.68	26.85
Merged-chr15-79243368-3	chr15	79242862	79243862	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045558, intron 6 of 12)	intron (NM_001045558, intron 6 of 12)	11386.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	1.72	0.46	2.77	4.72	1.4	3.22	2.11	0.0	2.5
Merged-chr1-191835039-3	chr1	191834537	191835537	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13564.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	8.58	5.07	1.85	7.42	6.06	4.82	7.39	4.86	5.0
Merged-chr14-54781905-3	chr14	54781422	54782422	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016972)	promoter-TSS (NM_016972)	-36.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	36.61	29.95	37.0	39.81	31.26	38.58	61.26	74.28	68.07
Merged-chr15-62152866-3	chr15	62152363	62153363	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	66588.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	111.55	99.07	103.59	131.57	104.96	102.08	243.98	194.55	93.05
Merged-chr16-4200219-3	chr16	4199725	4200725	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	RSINE1|SINE|B4	13179.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	44.05	50.23	28.67	52.63	49.45	45.82	76.05	87.11	26.85
Merged-chr15-86206634-3	chr15	86206143	86207143	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7816.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	83.52	52.99	61.05	62.07	37.32	45.82	45.42	48.64	29.35
Merged-chr8-126833172-3	chr8	126832642	126833642	+	998.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15878.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	360.39	209.2	214.59	342.76	217.86	296.6	333.75	309.96	152.38
Merged-chr9-78587871-7	chr9	78587361	78588361	+	998.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172773, intron 1 of 10)	CpG	184.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	214.52	211.96	145.22	246.95	221.13	196.93	197.51	254.25	147.39
Merged-chr1-64616974-6	chr1	64616419	64617419	+	998.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025964, exon 1 of 3)	5' UTR (NM_025964, exon 1 of 3)	249.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	203.08	254.35	218.29	188.25	178.67	160.76	205.96	269.28	171.12
Merged-chr13-60877460-2	chr13	60876957	60877957	+	998.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13041.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	24.6	41.93	38.85	35.76	59.71	69.93	104.56	84.45	43.09
Merged-chr8-13757672-3	chr8	13757188	13758188	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357247)	promoter-TSS (NM_001357247)	32.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	98.39	76.95	68.45	114.03	125.49	127.8	122.52	73.84	59.33
Merged-chrX-98881291-3	chrX	98880770	98881770	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313756, intron 2 of 2)	intron (NM_001313756, intron 2 of 2)	9755.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	12.01	9.68	13.87	10.8	8.4	8.84	11.62	8.84	13.12
Merged-chr2-127792473-3	chr2	127791969	127792969	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015476)	promoter-TSS (NR_015476)	19.0	NR_015476	67885.0	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	36.61	32.72	35.15	44.53	33.59	29.74	21.12	22.55	22.48
Merged-chr10-121995592-3	chr10	121995094	121996094	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	51721.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	1.72	5.53	5.55	12.14	8.4	16.08	2.11	4.42	0.0
Merged-chr19-29675635-3	chr19	29675138	29676138	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22303.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	13.73	12.44	20.35	19.57	12.6	6.43	24.29	16.36	13.74
Merged-chr1-164405610-3	chr1	164405106	164406106	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138314, intron 13 of 13)	intron (NM_138314, intron 13 of 13)	52749.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	12.01	11.06	3.7	31.04	21.46	8.84	28.52	19.46	23.73
Merged-chr11-68867349-3	chr11	68866842	68867842	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14211.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	56.06	54.37	37.0	57.35	29.39	35.37	36.97	16.36	20.61
Merged-chr2-26962917-3	chr2	26962408	26963408	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207234, intron 1 of 7)	intron (NM_207234, intron 1 of 7)	1478.0	NM_207234	227656.0	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	59.49	61.75	42.55	56.68	44.78	49.03	63.37	96.83	75.57
Merged-chr11-96890125-3	chr11	96889618	96890618	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26396.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	76.66	92.16	43.47	99.86	73.24	79.58	152.09	160.95	73.69
Merged-chr15-13391535-3	chr15	13391037	13392037	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217862.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	36.04	39.17	27.75	31.04	35.45	36.97	35.91	29.18	33.72
Merged-chr10-116565107-3	chr10	116564677	116565677	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	15359.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	118.99	139.62	77.7	97.16	82.57	61.09	158.43	180.85	74.32
Merged-chr10-115315029-3	chr10	115314507	115315507	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	584.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	360.97	492.12	339.46	379.87	437.58	323.12	395.01	408.12	242.94
Merged-chr11-109468358-3	chr11	109467867	109468867	+	998.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	4862.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	18.31	15.67	14.8	24.96	14.46	20.09	14.79	21.22	5.62
Merged-chr13-111489318-2	chr13	111488818	111489818	+	998.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028487, intron 1 of 12)	CpG	809.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	499.4	418.39	415.3	396.73	324.69	287.76	415.08	328.09	256.06
Merged-chr16-45377565-2	chr16	45377062	45378062	+	998.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31491.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	8.01	5.53	0.92	16.19	6.06	23.31	1.06	3.1	1.25
Merged-chr6-73470578-1	chr6	73470078	73471078	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025737)	promoter-TSS (NM_025737)	443.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	6.29	5.99	0.0	1.35	1.4	3.22	1.06	1.77	3.75
Merged-chr3-142881097-3	chr3	142880618	142881618	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178654, intron 1 of 21)	intron (NM_178654, intron 1 of 21)	886.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	148.16	126.25	169.27	150.46	97.5	163.97	149.98	87.99	99.3
Merged-chr17-73041140-3	chr17	73040660	73041660	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-66825.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	53.77	38.71	37.92	95.81	47.58	76.36	66.54	87.11	38.1
Merged-chrX-85330055-1	chrX	85329555	85330555	+	998.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	80378.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	2.29	1.38	0.0	2.7	3.27	9.65	0.0	0.44	1.87
Merged-chr19-12730631-3	chr19	12730130	12731130	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34840.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	15.45	23.5	26.82	37.11	26.59	42.6	26.4	30.95	29.35
Merged-chr3-27302537-3	chr3	27302042	27303042	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14535.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	44.62	60.36	47.17	82.99	97.03	101.28	106.67	105.24	64.33
Merged-chr5-105110527-5	chr5	105110027	105111027	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153378)	promoter-TSS (NR_153378)	-235.0	NM_172777	236573.0	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	148.73	133.63	86.02	112.0	74.17	78.77	146.81	122.92	82.44
Merged-chr8-106820742-1	chr8	106820242	106821242	+	998.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173037, intron 17 of 17)	B3A|SINE|B2	-49500.0	NM_008217	15118.0	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	0.57	2.3	0.0	1.35	1.87	2.41	29.57	15.48	10.62
Merged-chr10-44676719-3	chr10	44676215	44677215	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217967.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	27.46	34.1	25.9	25.64	26.12	45.82	19.01	17.69	19.98
Merged-chr16-59583766-3	chr16	59583257	59584257	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-28005.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	14.3	9.68	14.8	12.14	10.26	16.88	12.67	20.78	39.35
Merged-chr12-82223670-3	chr12	82223169	82224169	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	53653.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	47.48	35.02	49.02	53.98	39.19	69.13	73.93	58.37	32.48
Merged-chr12-80839163-3	chr12	80838651	80839651	+	998.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	48619.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	78.94	95.84	70.3	112.0	65.78	54.66	109.84	123.36	58.08
Merged-chr18-12141495-3	chr18	12140979	12141979	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 6 of 12)	intron (NM_024182, intron 6 of 12)	12629.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	31.46	52.53	37.0	35.09	23.33	27.33	71.82	91.53	32.48
Merged-chrX-153723705-3	chrX	153723222	153724222	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027327, exon 1 of 4)	5' UTR (NM_027327, exon 1 of 4)	168.0	NM_027327	70123.0	Mm.146408	NM_027327	ENSMUSG00000086316	Nbdy	2210013O21Rik|AI181827|Thp5	negative regulator of P-body association	protein-coding	48.62	31.33	20.35	54.65	54.11	32.96	46.47	45.54	26.23
Merged-chr5-139325622-3	chr5	139325119	139326119	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-155.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	97.82	70.96	99.89	109.98	79.31	112.53	100.34	64.11	62.45
Merged-chr11-105369052-3	chr11	105368541	105369541	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172568, intron 10 of 11)	intron (NM_172568, intron 10 of 11)	76395.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	10.87	11.06	7.4	12.14	9.33	8.04	9.51	5.75	5.62
Merged-chr2-160208488-3	chr2	160207983	160208983	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119011.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	25.17	28.57	18.5	39.81	27.06	27.33	44.36	35.82	33.1
Merged-chr16-92039684-3	chr16	92039174	92040174	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18648.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	72.08	57.14	46.25	76.24	78.37	92.44	80.27	92.41	44.97
Merged-chr18-76228154-3	chr18	76227653	76228653	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13548.0	NM_010754	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	15.45	14.28	16.65	15.52	7.0	10.45	22.18	15.92	19.98
Merged-chr7-128068045-3	chr7	128067540	128068540	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008401, intron 2 of 29)	intron (NM_008401, intron 2 of 29)	5400.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	28.03	31.79	29.6	29.01	18.19	54.66	25.35	27.86	26.23
Merged-chr15-59646923-3	chr15	59646426	59647426	+	998.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1728.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	82.95	82.02	60.12	80.29	62.05	70.73	66.54	54.83	71.2
Merged-chr9-44986623-3	chr9	44986097	44987097	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013487, exon 5 of 5)	3' UTR (NM_013487, exon 5 of 5)	4811.0	NM_013487	12500.0	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	63.5	37.32	11.1	62.75	46.18	32.15	19.01	19.01	16.24
Merged-chr15-66103580-3	chr15	66103052	66104052	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-126748.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	8.58	4.15	7.4	5.4	3.73	4.82	8.45	4.86	5.62
Merged-chr10-98781143-3	chr10	98780660	98781660	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133482.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	12.01	18.89	6.47	21.59	20.53	13.66	19.01	25.2	10.62
Merged-chr16-77251630-3	chr16	77251143	77252143	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77685.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.0	4.61	2.77	5.4	1.87	3.22	1.06	5.75	0.0
Merged-chr15-59615678-3	chr15	59615186	59616186	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32968.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	116.7	111.51	102.67	159.91	117.09	144.68	92.94	127.34	90.56
Merged-chr8-110846638-3	chr8	110846129	110847129	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310607)	promoter-TSS (NM_001310607)	29.0	NM_001310607	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	129.28	149.29	103.59	134.94	153.01	113.33	173.21	153.87	79.94
Merged-chr8-83055051-3	chr8	83054540	83055540	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-110312.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	40.62	50.23	37.92	58.7	67.64	86.81	74.99	53.94	37.47
Merged-chr2-49276223-3	chr2	49275710	49276710	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290656, intron 6 of 9)	intron (NM_001290656, intron 6 of 9)	30310.0	NM_001290656	109241.0	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630	methyl-CpG binding domain protein 5	protein-coding	9.72	12.44	9.25	10.12	6.53	8.04	8.45	4.86	9.99
Merged-chr4-48419224-3	chr4	48418740	48419740	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281978, intron 15 of 18)	intron (NM_001281978, intron 15 of 18)	54223.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	9.15	17.51	21.27	22.27	32.66	42.6	9.51	12.82	16.86
Merged-chr16-17704446-3	chr16	17703920	17704920	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	18480.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	97.25	101.83	63.82	174.08	191.27	136.64	160.54	160.51	68.07
Merged-chr11-5485431-3	chr11	5484934	5485934	+	998.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35207.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	41.19	39.63	30.52	29.69	39.65	32.96	50.7	46.87	21.86
Merged-chr2-101767393-3	chr2	101766865	101767865	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	30342.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	134.43	119.8	100.82	77.59	56.45	86.01	89.78	109.66	85.56
Merged-chr10-127339069-3	chr10	127338633	127339633	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	2446.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	5.15	7.37	2.77	5.4	2.33	7.23	5.28	4.86	3.75
Merged-chr19-34517416-3	chr19	34516901	34517901	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	10073.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	97.25	125.79	133.19	92.44	101.7	127.0	111.96	156.53	78.69
Merged-chr10-57828847-3	chr10	57828334	57829334	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	34290.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	32.61	44.7	43.47	37.11	30.79	71.54	40.14	38.47	36.22
Merged-chr7-110006663-3	chr7	110006169	110007169	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037959)	promoter-TSS (NR_037959)	-23.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	71.51	55.75	44.4	68.15	45.25	72.34	73.93	68.98	48.09
Merged-chr6-115321545-3	chr6	115321031	115322031	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-39420.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	44.05	47.92	52.72	43.86	47.58	53.85	36.97	52.18	24.98
Merged-chr10-81173287-3	chr10	81172779	81173779	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3352.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	68.07	32.72	37.0	77.59	61.11	49.03	53.87	57.48	29.35
Merged-chr10-26373114-3	chr10	26372596	26373596	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172787, intron 1 of 21)	intron (NM_172787, intron 1 of 21)	976.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	11.44	9.68	1.85	10.12	6.53	16.88	7.39	7.96	5.0
Merged-chr12-98820810-3	chr12	98820309	98821309	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 28 of 43)	intron (NM_001081191, intron 28 of 43)	49787.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	25.74	32.25	29.6	28.34	28.46	15.27	28.52	17.69	19.36
Merged-chr16-38395620-3	chr16	38395115	38396115	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134102)	TTS (NM_134102)	33425.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	70.93	36.86	18.5	99.86	45.25	69.93	58.09	42.45	24.36
Merged-chr5-115187992-3	chr5	115187513	115188513	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1892.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	16.02	12.44	0.0	10.8	6.06	5.63	6.34	3.54	1.87
Merged-chr2-148490775-3	chr2	148490282	148491282	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47247.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	113.27	158.05	82.32	108.63	104.03	138.25	122.52	149.89	105.55
Merged-chr19-60946824-3	chr19	60946324	60947324	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	57075.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	136.15	120.26	106.37	120.77	87.24	174.42	113.01	157.85	119.91
Merged-chr2-30393100-3	chr2	30392590	30393590	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020329, intron 1 of 7)	intron (NM_020329, intron 1 of 7)	836.0	NM_001290508	57170.0	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	15.45	18.43	25.9	24.96	22.86	29.74	19.01	15.92	9.37
Merged-chr11-97632157-3	chr11	97631651	97632651	+	998.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	24.03	4.61	0.0	13.49	7.46	7.23	6.34	8.84	6.87
Merged-chr15-94688679-2	chr15	94688178	94689178	+	998.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59493.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	6.29	7.83	0.92	43.86	19.13	22.51	67.6	61.9	38.1
Merged-chr11-57677519-2	chr11	57677016	57678016	+	998.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-28022.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	12.59	22.58	25.9	20.92	22.86	26.53	5.28	5.75	3.75
Merged-chr11-73324192-3	chr11	73323724	73324724	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023113, intron 1 of 5)	intron (NM_023113, intron 1 of 5)	413.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	276.87	375.08	153.54	329.94	356.88	206.57	274.61	377.61	158.63
Merged-chr2-5951885-3	chr2	5951359	5952359	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081132, intron 1 of 21)	CpG	390.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	81.8	70.04	54.57	75.57	84.9	62.7	88.72	55.27	58.08
Merged-chr15-76626977-3	chr15	76626462	76627462	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-878.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	123.56	146.07	101.74	153.16	146.02	222.65	128.85	164.49	113.04
Merged-chr18-36359298-3	chr18	36358783	36359783	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081365, intron 1 of 2)	intron (NM_001081365, intron 1 of 2)	10659.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	30.32	29.03	26.82	34.41	37.32	49.83	38.02	39.8	35.6
Merged-chr19-11813320-3	chr19	11812854	11813854	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	6049.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	37.76	29.95	42.55	24.29	24.72	48.23	23.24	17.24	10.62
Merged-chr2-45239084-3	chr2	45238554	45239554	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121612.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	243.12	243.75	131.34	168.0	143.68	148.7	160.54	187.04	154.88
Merged-chr5-146818949-3	chr5	146818458	146819458	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13932.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	151.02	105.06	110.07	129.55	92.37	125.39	115.12	114.96	71.82
Merged-chr15-93387636-3	chr15	93387133	93388133	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347097, exon 7 of 8)	exon (NM_001347097, exon 7 of 8)	10701.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	30.32	30.41	43.47	31.04	30.79	25.72	27.46	25.65	9.37
Merged-chr14-49172597-3	chr14	49172088	49173088	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027492, intron 1 of 4)	CpG	342.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	66.93	59.44	75.85	76.92	44.78	63.5	94.0	39.8	36.85
Merged-chrX-75084874-3	chrX	75084295	75085295	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181584, exon 1 of 10)	5' UTR (NM_181584, exon 1 of 10)	110.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	53.77	66.35	46.25	47.9	52.72	44.21	40.14	45.99	49.96
Merged-chr1-88094591-3	chr1	88093996	88094996	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201642)	promoter-TSS (NM_201642)	-505.0	NM_201642	394432.0	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	98.97	145.15	71.22	162.61	204.33	201.75	118.29	168.02	126.15
Merged-chr15-6340574-3	chr15	6340065	6341065	+	998.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40776.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	25.74	32.72	22.2	57.35	43.85	52.25	29.57	30.51	32.48
Merged-chr1-65473335-2	chr1	65472847	65473847	+	998.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	162090.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	3.43	4.61	7.4	5.4	4.67	4.82	3.17	2.21	2.5
Merged-chr12-106658445-2	chr12	106657952	106658952	+	998.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57872.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	2.29	3.69	5.55	12.82	11.2	20.09	4.22	1.33	3.75
Merged-chr7-67442530-3	chr7	67442038	67443038	+	998.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-69680.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	40.62	40.09	24.97	35.76	41.05	52.25	38.02	39.8	38.72
Merged-chr10-17721198-3	chr10	17720722	17721722	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2006.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	37.76	39.17	38.85	50.6	29.86	45.01	44.36	35.82	58.71
Merged-chr2-3512188-3	chr2	3511684	3512684	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177647)	promoter-TSS (NM_177647)	630.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	193.93	216.57	111.92	172.05	198.73	150.31	178.5	209.59	77.44
Merged-chr17-32536525-3	chr17	32536004	32537004	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024442)	promoter-TSS (NM_024442)	-53.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	18.88	8.75	16.65	18.89	7.93	11.25	13.73	11.94	16.86
Merged-chr7-142460704-3	chr7	142460228	142461228	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271509)	promoter-TSS (NM_001271509)	-84.0	NM_001271510	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	18.31	21.2	11.1	4.05	1.87	16.08	20.07	17.69	14.36
Merged-chr7-19001269-3	chr7	19000773	19001773	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145579, exon 3 of 3)	3' UTR (NM_145579, exon 3 of 3)	-2792.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	56.06	58.98	100.82	41.16	28.46	77.16	52.81	50.41	37.47
Merged-chr16-91717162-3	chr16	91716674	91717674	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 2 of 11)	MTE2a|LTR|ERVL-MaLR	11628.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	23.45	12.9	9.25	53.98	24.72	15.27	30.63	17.69	19.98
Merged-chr16-17554138-3	chr16	17553633	17554633	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145435, intron 4 of 7)	intron (NM_001145435, intron 4 of 7)	7114.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	23.45	15.21	7.4	28.34	32.66	17.68	6.34	9.73	1.25
Merged-chr10-99204748-3	chr10	99204250	99205250	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58481.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	86.95	80.18	57.35	86.36	55.51	66.71	81.33	104.79	41.84
Merged-chr12-51678498-3	chr12	51677996	51678996	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	MTD|LTR|ERVL-MaLR	-12470.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	104.11	105.52	49.02	98.51	88.64	74.75	126.74	156.97	65.58
Merged-chr8-123190967-3	chr8	123190466	123191466	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	4731.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	2.29	3.23	1.85	3.37	5.13	3.22	5.28	5.31	7.49
Merged-chr18-53149767-3	chr18	53149281	53150281	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26511.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	18.88	18.43	8.32	3.37	5.13	10.45	14.79	5.31	6.25
Merged-chr3-108256155-3	chr3	108255669	108256669	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011967)	promoter-TSS (NM_011967)	-757.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	44.05	59.9	39.77	51.95	46.65	30.54	54.92	65.88	28.1
Merged-chr10-96214078-3	chr10	96213567	96214567	+	998.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12140.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.29	2.3	3.7	4.72	2.33	1.61	5.28	5.31	3.12
Merged-chr9-106429874-1	chr9	106429374	106430374	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001324534, exon 1 of 3)	5' UTR (NM_001324534, exon 1 of 3)	463.0	NM_009082	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	167.61	117.96	96.2	146.41	136.22	111.73	144.7	138.84	91.81
Merged-chr5-118413575-2	chr5	118413069	118414069	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-147150.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.57	2.3	1.85	2.02	3.27	1.61	0.0	1.33	6.25
Merged-chr17-84114142-3	chr17	84113632	84114632	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35472.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	44.62	32.72	16.65	37.11	30.32	46.62	33.8	27.86	18.74
Merged-chr9-95681532-2	chr9	95681044	95682044	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029620, exon 5 of 9)	exon (NM_029620, exon 5 of 9)	43916.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	82.38	85.71	72.15	108.63	93.3	127.0	246.09	279.89	116.79
Merged-chr16-30943495-3	chr16	30942994	30943994	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	137938.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	39.47	23.5	30.52	35.09	14.46	23.31	26.4	38.47	15.61
Merged-chr1-61042903-1	chr1	61042403	61043403	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K-int|LTR|ERVL-MaLR	64989.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.29	2.76	5.55	0.67	1.87	1.61	0.0	1.33	5.0
Merged-chr14-45107249-3	chr14	45106757	45107757	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112168.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	28.03	20.74	16.65	18.89	14.93	22.51	36.97	38.03	30.6
Merged-chr13-102665365-3	chr13	102664859	102665859	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28188.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	24.03	17.97	24.05	8.1	4.67	3.22	28.52	26.97	16.86
Merged-chr3-69171300-3	chr3	69170777	69171777	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40044.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	29.75	27.19	19.42	39.81	32.19	35.37	27.46	23.88	11.87
Merged-chr7-80371425-3	chr7	80370930	80371930	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172903)	promoter-TSS (NM_172903)	-55.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	28.03	15.67	25.9	42.51	16.33	33.76	32.74	15.92	6.87
Merged-chr11-104441750-3	chr11	104441228	104442228	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081045, exon 1 of 14)	5' UTR (NM_001081045, exon 1 of 14)	563.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	387.28	388.9	349.63	368.4	320.96	325.53	353.82	337.37	297.9
Merged-chr10-112138801-3	chr10	112138297	112139297	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46A2|LTR|ERVK	-24824.0	NM_001310675	353025.0	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	30.32	47.92	15.72	34.41	22.39	15.27	42.25	39.35	16.86
Merged-chr4-117886949-3	chr4	117886449	117887449	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033617, intron 1 of 7)	CpG	380.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	245.41	234.54	172.97	169.35	192.67	182.46	262.99	275.91	154.88
Merged-chr6-83613454-3	chr6	83612962	83613962	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40958.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	24.6	14.28	21.27	21.59	9.8	28.94	13.73	8.4	9.37
Merged-chr9-83555159-2	chr9	83554661	83555661	+	998.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	6823.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	26.31	26.73	15.72	35.76	26.59	24.11	91.89	100.81	23.73
Merged-chr16-10452715-3	chr16	10452206	10453206	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5344.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	45.19	32.72	64.75	21.59	20.99	20.9	32.74	33.16	28.73
Merged-chr3-149085014-2	chr3	149084478	149085478	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130343.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	63.5	70.5	29.6	60.72	48.98	57.07	16.9	14.15	8.74
Merged-chr2-121450262-3	chr2	121449780	121450780	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001025371)	TTS (NM_001025371)	1082.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	169.33	153.44	137.82	141.02	101.23	138.25	188.0	185.71	153.01
Merged-chr4-130916866-3	chr4	130916382	130917382	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	3548.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	106.97	115.2	106.37	105.26	119.89	138.25	106.67	127.79	99.92
Merged-chr17-36252569-3	chr17	36252060	36253060	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5286.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	8.01	10.6	20.35	6.07	6.53	12.06	15.84	8.84	9.99
Merged-chr17-62623375-3	chr17	62622889	62623889	+	998.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	257928.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	6.29	5.07	4.62	10.8	5.13	17.68	11.62	10.17	2.5
Merged-chr1-138962615-5	chr1	138962110	138963110	+	997.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1099.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	105.83	114.74	81.4	132.92	122.23	118.16	111.96	153.87	79.32
Merged-chr9-66512545-3	chr9	66512079	66513079	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175206, intron 1 of 1)	intron (NM_175206, intron 1 of 1)	2014.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	234.54	257.58	165.57	319.14	358.74	180.85	262.99	380.71	121.78
Merged-chr2-167800238-3	chr2	167799743	167800743	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	109066.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	144.73	94.46	109.14	128.2	76.97	121.37	174.27	153.87	63.08
Merged-chr4-116627506-3	chr4	116627005	116628005	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284229)	promoter-TSS (NM_001284229)	-8.0	NM_001284229	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	67.5	90.77	107.29	91.76	83.97	110.92	109.84	139.72	96.8
Merged-chr2-122418514-3	chr2	122418033	122419033	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22287.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	21.17	13.82	15.72	41.16	21.46	30.54	17.96	10.17	9.99
Merged-chr18-73746694-3	chr18	73746187	73747187	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 2 of 3)	intron (NM_053255, intron 2 of 3)	7792.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	22.88	31.33	29.6	41.16	22.86	29.74	30.63	24.76	33.1
Merged-chr15-103549658-3	chr15	103549146	103550146	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-11654.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	10.87	12.9	9.25	18.89	16.79	23.31	11.62	9.29	20.61
Merged-chr13-115209585-3	chr13	115209066	115210066	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107602.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.29	5.99	7.4	3.37	0.93	0.0	2.11	4.86	0.0
Merged-chr5-117871721-3	chr5	117871220	117872220	+	997.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 1 of 27)	intron (NM_008712, intron 1 of 27)	4881.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	74.94	100.91	92.5	99.18	90.04	149.5	102.45	108.77	93.68
Merged-chr7-48750024-3	chr7	48749473	48750473	+	997.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39030.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	10.3	10.6	9.25	13.49	8.86	12.06	22.18	14.15	14.99
Merged-chr12-8993402-3	chr12	8992861	8993861	+	997.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159527, intron 10 of 26)	B4A|SINE|B4	19360.0	NM_172470	74682.0	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	73.79	77.87	72.15	83.66	85.37	88.42	86.61	84.45	47.46
Merged-chr12-73794265-2	chr12	73793786	73794786	+	997.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107038.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.29	4.15	5.55	0.67	4.67	1.61	7.39	2.65	1.25
Merged-chr5-66087202-3	chr5	66086685	66087685	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	10994.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	72.08	87.09	57.35	76.92	78.37	79.58	87.66	104.35	59.33
Merged-chr15-97927991-3	chr15	97927502	97928502	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19706.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	34.32	11.06	24.05	19.57	6.53	4.82	19.01	7.96	5.62
Merged-chr13-98874401-3	chr13	98873900	98874900	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 6 of 23)	intron (NM_178716, intron 6 of 23)	16642.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	51.48	77.87	31.45	62.75	28.46	49.03	29.57	43.33	32.48
Merged-chr1-87639943-3	chr1	87639430	87640430	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	19618.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	215.66	261.26	185.92	289.45	236.52	167.99	164.76	223.74	151.76
Merged-chr2-173771918-3	chr2	173771415	173772415	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 3 of 5)	intron (NM_019806, intron 3 of 5)	34344.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	26.31	28.11	23.12	42.51	45.72	47.42	33.8	35.37	22.48
Merged-chr15-12118575-3	chr15	12118058	12119058	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358823, intron 2 of 18)	CpG-4794	707.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	215.66	144.23	110.07	200.39	136.22	126.19	201.73	80.03	89.93
Merged-chr15-59481312-3	chr15	59480824	59481824	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107126.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	19.45	19.35	23.12	41.83	25.66	37.78	23.24	15.48	11.87
Merged-chr6-125192160-3	chr6	125191676	125192676	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025595)	promoter-TSS (NM_025595)	-24.0	NM_025595	66493.0	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	127.0	152.52	145.22	109.98	110.1	170.4	105.62	123.81	100.55
Merged-chr12-100740437-3	chr12	100739917	100740917	+	997.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15297.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	37.18	36.4	25.9	31.04	23.79	43.4	26.4	32.72	17.49
Merged-chr15-81857888-2	chr15	81857378	81858378	+	997.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	CpG	448.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	202.51	152.52	122.09	196.34	118.49	149.5	193.28	192.78	133.65
Merged-chr6-119471011-3	chr6	119470489	119471489	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	MTE2a|LTR|ERVL-MaLR	-3778.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	18.88	11.98	3.7	6.75	13.53	34.56	11.62	16.8	21.86
Merged-chr10-25360683-3	chr10	25360138	25361138	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	840.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	164.18	109.67	102.67	145.74	98.43	83.59	121.46	73.4	50.59
Merged-chr4-141873083-3	chr4	141872602	141873602	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	1818.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	167.61	194.45	160.02	118.75	99.37	118.16	192.23	155.64	131.78
Merged-chr2-92459321-3	chr2	92458811	92459811	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_211358, exon 1 of 2)	5' UTR (NM_211358, exon 1 of 2)	483.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	190.49	196.29	169.27	180.82	241.18	181.66	199.62	206.93	126.78
Merged-chr14-57745567-3	chr14	57745092	57746092	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 1 of 7)	CpG	531.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	228.25	222.56	179.44	227.38	205.73	188.89	265.1	153.43	154.88
Merged-chr10-128149804-3	chr10	128149306	128150306	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039080, intron 3 of 13)	intron (NM_001039080, intron 3 of 13)	26762.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	22.31	11.98	24.05	12.82	18.19	32.96	10.56	10.61	8.74
Merged-chr13-75992876-1	chr13	75992376	75993376	+	997.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029343, intron 3 of 4)	intron (NM_029343, intron 3 of 4)	25137.0	NM_029343	75571.0	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	3.43	10.14	9.25	10.8	5.13	4.82	36.97	38.91	35.6
Merged-chr10-118866051-3	chr10	118865537	118866537	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	2866.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	134.43	114.27	61.97	132.92	88.17	70.73	120.41	109.22	47.46
Merged-chr7-135736530-3	chr7	135736032	135737032	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20153.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	15.45	11.98	14.8	10.8	10.26	26.53	27.46	20.78	28.73
Merged-chr7-97781999-3	chr7	97781503	97782503	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-6538.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	58.35	41.93	33.3	52.63	31.26	27.33	44.36	56.16	48.71
Merged-chr10-121429400-3	chr10	121428914	121429914	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	46836.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	28.03	15.67	15.72	35.76	22.86	20.09	21.12	14.59	6.25
Merged-chr4-119293990-3	chr4	119293499	119294499	+	997.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011732, intron 1 of 7)	CpG-10232	514.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	248.27	223.02	206.26	235.48	202.93	200.14	238.7	188.81	146.76
Merged-chr5-74957446-3	chr5	74956949	74957949	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8255.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	35.47	27.65	37.0	39.13	64.84	61.09	22.18	29.63	30.6
Merged-chr6-112752164-3	chr6	112751665	112752665	+	997.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-55495.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	41.19	24.42	44.4	34.41	17.73	42.6	13.73	19.9	10.62
Merged-chr7-38183170-3	chr7	38182664	38183664	+	997.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028166)	promoter-TSS (NM_028166)	-53.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	37.76	34.56	49.95	39.81	34.52	55.46	94.0	77.38	63.08
Merged-chr17-23749005-5	chr17	23748565	23749565	+	997.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-171.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	93.82	75.57	37.0	68.82	63.91	65.91	92.94	102.58	43.09
Merged-chr16-30063307-3	chr16	30062810	30063810	+	997.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2047.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	230.54	144.69	144.29	203.76	136.22	140.66	219.69	151.66	89.93
Merged-chr2-172406393-4	chr2	172405961	172406961	+	997.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	12667.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	32.61	30.41	25.9	33.06	14.93	14.47	19.01	16.8	27.48
Merged-chr12-73881659-3	chr12	73881170	73882170	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19654.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	34.9	41.01	46.25	22.94	26.12	50.64	43.3	34.49	31.23
Merged-chr4-6517809-3	chr4	6517301	6518301	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63530.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	12.59	6.91	18.5	4.05	7.0	3.22	6.34	8.84	8.74
Merged-chr10-86949296-3	chr10	86948810	86949810	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	58632.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	34.9	33.64	33.3	29.69	27.52	38.58	25.35	26.53	28.73
Merged-chr12-69357128-3	chr12	69356622	69357622	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025441)	promoter-TSS (NM_025441)	54.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	110.98	98.15	52.72	91.76	91.9	67.52	99.28	99.93	54.96
Merged-chr1-184616140-3	chr1	184615631	184616631	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58440.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	208.23	192.15	106.37	188.25	149.28	120.57	113.01	147.24	50.59
Merged-chr13-56634520-3	chr13	56634027	56635027	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24941.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	15.45	8.29	31.45	19.57	9.8	12.86	12.67	9.73	16.86
Merged-chr9-118610782-3	chr9	118610302	118611302	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	4093.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	189.35	158.05	172.04	230.08	153.01	164.78	241.87	211.8	129.28
Merged-chr4-130783103-3	chr4	130782604	130783604	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9433.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	50.91	60.36	67.52	47.23	34.52	66.71	71.82	63.23	43.72
Merged-chr5-105356591-3	chr5	105356081	105357081	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10105.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	12.01	12.9	6.47	2.7	14.46	8.04	8.45	10.61	2.5
Merged-chr13-8985070-3	chr13	8984578	8985578	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027000, intron 10 of 16)	intron (NM_027000, intron 10 of 16)	10934.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	86.95	74.65	57.35	47.9	26.59	23.31	134.14	143.7	47.46
Merged-chr3-95311205-3	chr3	95310717	95311717	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3973.0	NM_029789	76893.0	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	12.01	11.52	8.32	18.89	7.93	6.43	11.62	8.84	3.75
Merged-chr5-147742728-3	chr5	147742244	147743244	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16756.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	12.01	15.67	15.72	21.59	12.13	27.33	14.79	7.52	9.37
Merged-chr17-27612201-3	chr17	27611692	27612692	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	10772.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	17.73	14.75	18.5	12.82	3.73	6.43	7.39	8.84	7.49
Merged-chr1-172515550-3	chr1	172515043	172516043	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5587.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	58.35	46.08	20.35	29.69	22.86	37.78	91.89	87.11	74.94
Merged-chr13-107118312-3	chr13	107117822	107118822	+	997.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95752.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	9.72	5.53	16.65	8.1	3.27	3.22	6.34	4.42	11.24
Merged-chr3-116129309-4	chr3	116128732	116129732	+	997.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 1 of 8)	intron (NM_011693, intron 1 of 8)	456.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	100.11	116.58	95.27	128.87	94.23	99.67	191.17	177.31	99.3
Merged-chr10-93263658-2	chr10	93263154	93264154	+	997.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	47505.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	22.88	17.51	24.05	40.48	29.86	53.05	11.62	5.31	6.25
Merged-chr4-128724390-3	chr4	128723886	128724886	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 9 of 14)	intron (NM_018774, intron 9 of 14)	-3185.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	46.91	37.78	40.7	53.98	39.65	59.48	49.64	43.33	45.59
Merged-chr17-25875527-3	chr17	25875052	25876052	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	52.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	49.77	62.21	33.3	60.72	41.52	43.4	49.64	74.28	43.72
Merged-chr19-12016389-3	chr19	12015897	12016897	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20343.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	57.21	40.09	30.52	36.43	24.72	49.83	64.43	50.85	32.48
Merged-chr6-131245216-3	chr6	131244728	131245728	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170851, exon 2 of 9)	exon (NM_001170851, exon 2 of 9)	2134.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	54.92	93.08	65.67	53.98	58.78	69.13	62.31	66.33	53.71
Merged-chr18-37849002-3	chr18	37848491	37849491	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5669.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	10.87	9.68	8.32	6.07	7.0	21.7	10.56	6.63	9.37
Merged-chr18-76378912-3	chr18	76378404	76379404	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116459.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	1.14	3.69	3.7	4.05	0.47	0.0	1.06	2.65	2.5
Merged-chr5-29289915-3	chr5	29289414	29290414	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88476.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	22.88	18.43	15.72	29.69	37.32	33.76	32.74	24.32	13.74
Merged-chr11-88187951-3	chr11	88187439	88188439	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172099, intron 6 of 9)	intron (NM_001172099, intron 6 of 9)	-6167.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	10.87	4.15	5.55	6.75	5.13	1.61	9.51	5.31	1.25
Merged-chr1-37308824-3	chr1	37308323	37309323	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8985.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	61.21	63.13	74.0	26.31	15.39	28.13	35.91	20.78	6.25
Merged-chr16-93914427-3	chr16	93913895	93914895	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15172.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	19.45	16.13	10.17	35.09	31.26	22.51	276.72	302.88	154.88
Merged-chr6-87500453-3	chr6	87499957	87500957	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-4130.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	154.45	109.21	91.57	155.19	133.89	78.77	135.19	149.01	93.05
Merged-chr13-112251637-3	chr13	112251120	112252120	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36831.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.0	2.76	0.0	5.4	5.13	3.22	6.34	2.21	8.12
Merged-chr1-33898529-3	chr1	33898039	33899039	+	997.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	9082.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	47.48	40.55	8.32	25.64	7.0	20.9	7.39	9.29	6.25
Merged-chr1-131560846-4	chr1	131560346	131561346	+	997.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	32943.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	37.18	35.48	46.25	80.97	35.45	80.38	44.36	34.05	51.84
Merged-chr11-69981284-3	chr11	69980779	69981779	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018740)	promoter-TSS (NM_018740)	-44.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	282.02	169.11	217.36	219.28	118.03	220.24	242.92	163.16	154.26
Merged-chr14-49019973-3	chr14	49019459	49020459	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 13 of 17)	intron (NM_207214, intron 13 of 17)	-46590.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	14.3	14.75	11.1	12.82	10.73	7.23	11.62	8.84	13.12
Merged-chr1-80665367-3	chr1	80664878	80665878	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-26.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	110.98	141.92	56.42	104.58	104.03	80.38	98.23	138.84	101.17
Merged-chr4-118098899-1	chr4	118098399	118099399	+	997.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	Charlie20a|DNA|hAT-Charlie	36047.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.72	13.82	5.55	21.59	15.86	12.86	1.06	0.44	4.37
Merged-chr4-139209047-3	chr4	139208560	139209560	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14949.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	160.75	140.08	127.64	149.79	96.57	90.83	188.0	235.23	84.31
Merged-chr16-92021175-3	chr16	92020676	92021676	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-37146.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	50.34	29.03	19.42	52.63	49.45	37.78	76.05	78.71	28.1
Merged-chr8-46792011-4	chr8	46791476	46792476	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	52231.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	80.09	80.18	75.85	82.99	46.18	79.58	74.99	105.24	66.2
Merged-chr12-3355229-3	chr12	3354710	3355710	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-9922.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	73.22	68.66	61.97	64.1	61.58	81.99	140.47	122.04	84.94
Merged-chr12-51768862-3	chr12	51768347	51769347	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144788, exon 25 of 43)	exon (NM_144788, exon 25 of 43)	60689.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	20.02	18.89	26.82	26.31	16.79	8.04	14.79	13.27	18.74
Merged-chr10-127522427-3	chr10	127521910	127522910	+	997.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252316)	promoter-TSS (NM_001252316)	34.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	13.73	5.99	4.62	11.47	7.93	12.86	15.84	3.1	6.25
Merged-chr19-11698519-3	chr19	11698003	11699003	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033283, intron 1 of 5)	intron (NM_001033283, intron 1 of 5)	1448.0	NM_001033283	225923.0	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	10.3	6.91	7.4	10.8	7.93	7.23	7.39	9.73	5.0
Merged-chr8-126827106-3	chr8	126826591	126827591	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21929.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	250.56	246.52	172.04	259.09	203.86	254.8	224.97	275.47	165.5
Merged-chr11-120159013-3	chr11	120158513	120159513	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7662.0	NM_001164798	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	14.3	12.9	8.32	17.54	9.8	31.35	19.01	14.59	21.23
Merged-chr17-46857684-3	chr17	46857173	46858173	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-26260.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	446.77	407.33	394.03	410.9	354.55	307.85	466.83	289.18	232.32
Merged-chr10-96430360-3	chr10	96429852	96430852	+	997.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186649.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	16.59	7.37	5.55	5.4	5.13	15.27	9.51	9.73	9.37
Merged-chr8-91176361-2	chr8	91175873	91176873	+	997.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40879.0	NM_010241	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	2.86	6.91	12.95	0.67	1.4	0.0	3.17	4.42	6.25
Merged-chr5-90789863-3	chr5	90789353	90790353	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3752.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	5.15	7.83	1.85	11.47	7.46	4.02	6.34	3.98	1.25
Merged-chr6-98062048-3	chr6	98061531	98062531	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70248.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.58	6.45	10.17	12.82	6.06	4.82	9.51	9.73	9.37
Merged-chr17-57344158-3	chr17	57343653	57344653	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14533.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	130.43	83.86	58.27	101.21	45.72	77.16	100.34	105.68	77.44
Merged-chr18-24206320-3	chr18	24205804	24206804	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361200, exon 1 of 13)	5' UTR (NM_001361200, exon 1 of 13)	310.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	70.93	91.24	67.52	94.46	71.38	98.06	102.45	85.78	78.69
Merged-chr2-180692804-3	chr2	180692304	180693304	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111965)	promoter-TSS (NR_111965)	-756.0	NR_111965	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	44.05	54.37	29.6	31.71	36.85	15.27	45.42	35.37	44.34
Merged-chr9-95507592-3	chr9	95507104	95508104	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 1 of 25)	intron (NM_001357977, intron 1 of 25)	4392.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	20.02	19.81	12.02	14.84	10.73	23.31	33.8	24.76	12.49
Merged-chr4-75400953-3	chr4	75400456	75401456	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-122664.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	40.62	52.53	15.72	23.62	54.11	20.09	36.97	36.7	29.98
Merged-chr15-73716574-3	chr15	73716108	73717108	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6537.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	8.01	3.69	1.85	6.07	0.93	4.82	5.28	0.88	3.75
Merged-chr17-24172429-3	chr17	24171937	24172937	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2759.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	191.07	213.8	166.49	182.85	155.81	184.07	208.07	298.46	126.15
Merged-chr17-56023537-3	chr17	56023012	56024012	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13125.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	40.04	34.56	35.15	51.28	24.26	52.25	47.53	18.13	28.1
Merged-chr11-5787797-3	chr11	5787298	5788298	+	997.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146308)	promoter-TSS (NM_001146308)	-685.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	390.14	409.18	256.21	314.42	334.49	270.88	365.44	466.93	251.68
Merged-chr1-97769309-5	chr1	97768866	97769866	+	997.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026250)	promoter-TSS (NM_026250)	726.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	59.49	55.29	49.95	65.45	78.84	59.48	86.61	92.86	31.23
Merged-chr19-53404822-3	chr19	53404357	53405357	+	997.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	42.33	21.2	5.55	43.18	24.26	8.04	11.62	10.61	7.49
Merged-chr2-118507294-3	chr2	118506752	118507752	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-27556.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	13.16	8.75	3.7	16.87	4.67	4.02	15.84	9.29	11.87
Merged-chr15-66812699-3	chr15	66812203	66813203	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009192, exon 2 of 9)	5' UTR (NM_009192, exon 2 of 9)	19126.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	85.24	123.49	110.99	102.56	107.76	123.78	116.18	95.51	122.41
Merged-chr7-114317564-3	chr7	114317066	114318066	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 3 of 3)	intron (NR_029437, intron 3 of 3)	-41450.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	38.9	52.53	45.32	65.45	54.58	48.23	28.52	38.47	38.1
Merged-chr13-47234766-1	chr13	47234266	47235266	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	40763.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	17.16	20.27	14.8	21.59	26.12	23.31	8.45	3.54	5.0
Merged-chrX-162510585-1	chrX	162510085	162511085	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178256, intron 11 of 17)	intron (NM_178256, intron 11 of 17)	54931.0	NM_001359104	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.0	3.23	0.0	3.37	5.6	1.61	0.0	1.33	1.25
Merged-chr19-17264972-3	chr19	17264471	17265471	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74534.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	50.34	63.13	39.77	57.35	50.85	32.96	71.82	63.23	34.97
Merged-chrX-167133211-4	chrX	167132714	167133714	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62844.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	108.69	91.24	35.15	104.58	71.38	86.81	91.89	83.13	66.2
Merged-chr1-177491193-3	chr1	177490686	177491686	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45365.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	17.16	13.82	24.97	12.14	1.4	3.22	15.84	15.48	13.12
Merged-chr1-107389946-3	chr1	107389431	107390431	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	27617.0	NM_025867	66957.0	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	6.29	3.23	5.55	12.14	4.2	11.25	7.39	7.07	5.0
Merged-chr12-116442787-2	chr12	116442286	116443286	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 23 of 28)	intron (NM_133762, intron 23 of 28)	37384.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	11.44	10.6	16.65	14.17	20.53	27.33	82.38	91.09	38.72
Merged-chr7-73569209-3	chr7	73568695	73569695	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10800.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	20.59	17.97	27.75	16.19	8.86	20.9	30.63	33.16	17.49
Merged-chr1-154061527-3	chr1	154060987	154061987	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-139700.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	14.87	13.82	9.25	13.49	18.19	13.66	8.45	9.29	15.61
Merged-chr1-84245498-3	chr1	84245004	84246004	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	L1_Mus1|LINE|L1	-26543.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	38.33	27.19	30.52	36.43	23.33	33.76	23.24	26.53	18.11
Merged-chr1-106713913-2	chr1	106713461	106714461	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_177410, exon 1 of 1)	5' UTR (NM_177410, exon 1 of 1)	329.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	56.06	42.85	22.2	47.23	28.92	16.88	41.19	22.99	10.62
Merged-chr14-34747188-3	chr14	34746697	34747697	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001301330, exon 19 of 19)	3' UTR (NM_001301330, exon 19 of 19)	-72939.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	2.86	7.83	3.7	7.42	12.6	8.04	9.51	5.75	6.87
Merged-chr10-121264067-1	chr10	121263567	121264567	+	997.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	47329.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	26.89	33.64	16.65	65.45	87.24	54.66	11.62	13.71	11.24
Merged-chr6-30896775-4	chr6	30896140	30897140	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054073)	TTS (NM_054073)	154.0	NR_149738	54160.0	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	55.49	46.08	37.92	74.22	43.85	73.95	84.49	59.69	40.59
Merged-chr10-25128591-3	chr10	25128086	25129086	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	71584.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	28.03	39.17	47.17	31.71	36.85	29.74	26.4	23.43	20.61
Merged-chr14-40956696-3	chr14	40956198	40957198	+	997.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	-8489.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	32.04	45.16	24.97	58.7	58.31	65.91	20.07	16.36	10.62
Merged-chr16-78376066-5	chr16	78375541	78376541	+	997.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297747, intron 1 of 4)	CpG	716.0	NR_002700	654432.0	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	172.76	92.16	35.15	189.6	132.02	60.28	122.52	87.11	51.84
Merged-chr12-79812997-3	chr12	79812473	79813473	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	111760.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	40.62	33.18	40.7	53.3	38.25	32.15	69.71	69.86	25.61
Merged-chr9-100454356-3	chr9	100453868	100454868	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32105.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	45.19	33.64	32.37	41.16	44.32	36.17	22.18	15.48	21.23
Merged-chr4-53386426-3	chr4	53385915	53386915	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR89|LTR|ERVL?	-53998.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	9.15	8.29	0.0	6.07	9.8	6.43	12.67	7.52	6.87
Merged-chr10-13304041-3	chr10	13303562	13304562	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	20227.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	64.64	38.71	8.32	69.5	39.19	43.4	72.88	44.22	20.61
Merged-chr17-56266073-3	chr17	56265575	56266575	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	9282.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	166.47	154.82	101.74	178.8	150.22	97.26	163.71	201.19	91.18
Merged-chr13-13394236-3	chr13	13393740	13394740	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031999)	promoter-TSS (NM_031999)	-616.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	14.87	11.52	9.25	41.16	17.26	44.21	24.29	24.32	5.0
Merged-chr11-16968025-3	chr11	16967506	16968506	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16596.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	16.02	8.29	26.82	6.07	6.06	14.47	5.28	2.65	7.49
Merged-chr2-93334519-3	chr2	93333986	93334986	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183180)	promoter-TSS (NM_183180)	1.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	19.45	4.61	6.47	14.84	5.13	6.43	14.79	4.86	1.87
Merged-chr4-59214898-3	chr4	59214403	59215403	+	997.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011673, intron 5 of 8)	intron (NM_011673, intron 5 of 8)	25353.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	29.17	31.33	32.37	17.54	21.46	18.49	30.63	34.93	8.74
Merged-chr9-22484958-4	chr9	22484421	22485421	+	997.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178415, intron 2 of 22)	PB1D10|SINE|Alu	9206.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	102.97	103.22	78.62	145.74	174.47	98.06	88.72	103.02	34.35
Merged-chrX-51012465-3	chrX	51011963	51012963	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172413, intron 2 of 2)	intron (NM_172413, intron 2 of 2)	5555.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	21.17	29.49	30.52	14.17	10.26	20.9	28.52	13.71	22.48
Merged-chr17-65784826-3	chr17	65784327	65785327	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	MTC|LTR|ERVL-MaLR	1472.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	49.2	75.57	58.27	64.1	55.05	39.39	90.83	80.47	28.73
Merged-chr17-50410073-3	chr17	50409570	50410570	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99477.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	30.32	17.97	14.8	24.29	10.26	16.88	30.63	4.42	2.5
Merged-chr2-30077624-3	chr2	30077117	30078117	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1081.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	30.89	20.27	35.15	26.99	15.39	51.44	28.52	25.2	19.36
Merged-chr15-94545034-3	chr15	94544531	94545531	+	997.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 1 of 11)	RLTR42-int|LTR|ERVK	1371.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	48.05	76.49	55.5	43.18	39.65	63.5	65.48	65.88	49.34
Merged-chr2-50786611-2	chr2	50786106	50787106	+	997.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-123078.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.29	3.23	1.85	5.4	8.86	11.25	8.45	10.17	8.74
Merged-chr12-33380220-3	chr12	33379728	33380728	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14532.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	2.86	6.91	5.55	14.17	9.8	3.22	5.28	2.21	6.25
Merged-chr9-64084536-3	chr9	64084039	64085039	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 1 of 2)	intron (NR_040743, intron 1 of 2)	3778.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	105.83	73.73	59.2	167.33	78.84	103.69	132.02	82.69	67.45
Merged-chr13-99412886-3	chr13	99412386	99413386	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015515)	promoter-TSS (NR_015515)	-60.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	25.17	30.87	25.9	38.46	30.32	45.01	5.28	15.03	12.49
Merged-chr15-99970772-3	chr15	99970261	99971261	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284522, intron 1 of 15)	RMER6A|LTR|ERVK	696.0	NM_001284522	207214.0	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	66.93	67.74	36.07	29.69	39.65	69.93	53.87	47.75	33.72
Merged-chr1-176068130-3	chr1	176067646	176068646	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	145796.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	53.77	46.08	20.35	43.86	26.12	8.84	25.35	18.57	13.12
Merged-chr12-112950532-3	chr12	112950034	112951034	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8392.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	2.29	3.23	6.47	8.1	1.87	9.65	3.17	0.88	2.5
Merged-chr15-89210700-3	chr15	89210204	89211204	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027805)	promoter-TSS (NM_027805)	-855.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	125.85	156.67	94.35	95.14	112.43	111.73	143.64	224.18	115.54
Merged-chr1-171345618-3	chr1	171345112	171346112	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360824)	promoter-TSS (NM_001360824)	33.0	NM_001242580	27045.0	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	289.46	264.03	114.69	242.9	215.53	179.24	200.68	209.59	89.31
Merged-chr11-114883048-3	chr11	114882555	114883555	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6986.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	117.27	94.46	93.42	117.4	75.57	52.25	57.03	77.38	38.72
Merged-chr10-59224098-3	chr10	59223594	59224594	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	2172.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	46.91	75.57	34.22	45.88	52.25	44.21	141.53	104.35	58.71
Merged-chr7-75575490-3	chr7	75574998	75575998	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	119964.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	90.96	109.67	30.52	103.91	97.97	32.15	19.01	22.55	32.48
Merged-chr19-44135825-3	chr19	44135323	44136323	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356578)	promoter-TSS (NM_001356578)	53.0	NM_001081077	72502.0	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	-	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	78.94	76.95	91.57	79.62	81.64	106.1	79.21	77.82	36.85
Merged-chr1-75218596-6	chr1	75218097	75219097	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313723, intron 1 of 3)	intron (NM_001313723, intron 1 of 3)	697.0	NM_001313723	22145.0	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	100.68	81.1	20.35	164.63	149.75	85.2	57.03	32.28	21.23
Merged-chr9-13574336-3	chr9	13573849	13574849	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45640.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	33.75	42.85	47.17	43.18	31.72	37.78	28.52	19.01	26.85
Merged-chr2-154765842-3	chr2	154765310	154766310	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25300.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	13.16	10.14	7.4	8.1	6.53	1.61	12.67	9.73	6.25
Merged-chr9-94617340-3	chr9	94616865	94617865	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52527.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	14.87	16.59	26.82	18.89	14.93	14.47	25.35	31.84	16.24
Merged-chr7-16582403-3	chr7	16581916	16582916	+	997.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31408.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	40.62	41.47	44.4	29.01	34.52	29.74	39.08	26.53	26.23
Merged-chr2-18694308-6	chr2	18693793	18694793	+	997.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4729.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	98.39	99.53	51.8	79.62	55.51	61.89	80.27	41.56	33.72
Merged-chr1-155006723-3	chr1	155006213	155007213	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76551.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.0	1.84	0.0	6.75	2.33	3.22	1.06	0.88	0.0
Merged-chr11-9535014-3	chr11	9534509	9535509	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 47 of 61)	intron (NM_178259, intron 47 of 61)	343067.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	4.0	4.15	12.95	2.02	7.0	10.45	6.34	4.86	11.24
Merged-chr9-85413989-3	chr9	85413468	85414468	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86818.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	13.16	10.6	16.65	7.42	7.46	8.84	9.51	6.63	7.49
Merged-chr8-84832354-3	chr8	84831834	84832834	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	52.0	NM_183358	102060.0	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	68.65	83.4	110.99	87.71	70.44	105.3	146.81	110.1	61.83
Merged-chr4-141737055-3	chr4	141736554	141737554	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-9621.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	27.46	37.32	59.2	32.39	35.45	45.82	15.84	32.72	21.23
Merged-chr11-53737214-3	chr11	53736709	53737709	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16415.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	17.73	13.82	22.2	24.29	12.6	19.29	24.29	19.9	12.49
Merged-chr12-102283116-3	chr12	102282548	102283548	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161365)	promoter-TSS (NM_001161365)	-26.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	96.68	96.3	110.07	115.38	118.03	140.66	99.28	87.11	66.82
Merged-chr17-33920399-3	chr17	33919884	33920884	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009318, exon 3 of 8)	exon (NM_009318, exon 3 of 8)	906.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	314.63	315.18	196.09	240.2	246.32	172.01	202.79	315.71	162.38
Merged-chr16-90426359-3	chr16	90425861	90426861	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	39964.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	9.15	10.14	4.62	14.17	5.13	5.63	12.67	2.65	12.49
Merged-chr7-19359557-3	chr7	19359048	19360048	+	997.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-65.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	78.94	68.66	74.92	68.15	43.39	62.7	99.28	80.03	58.71
Merged-chr5-138194340-3	chr5	138193875	138194875	+	997.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	61.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	201.93	171.87	180.37	177.45	166.54	184.07	179.55	217.99	111.79
Merged-chr18-32359362-4	chr18	32358791	32359791	+	997.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045403, exon 3 of 3)	non-coding (NR_045403, exon 3 of 3)	-17926.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	58.35	59.9	42.55	38.46	27.06	42.6	50.7	49.96	31.85
Merged-chr9-7774763-3	chr9	7774260	7775260	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9630.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	36.04	35.02	32.37	37.78	25.66	21.7	24.29	26.97	28.73
Merged-chr18-80468118-3	chr18	80467615	80468615	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1552.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	39.47	26.73	23.12	46.56	31.72	23.31	28.52	30.51	18.74
Merged-chr5-66088895-3	chr5	66088393	66089393	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	9286.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	114.98	108.28	89.72	101.88	68.58	103.69	123.57	123.81	83.06
Merged-chr1-172313041-3	chr1	172312517	172313517	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	650.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	271.15	194.91	201.64	262.47	206.2	229.08	173.21	158.3	53.71
Merged-chr5-148550548-3	chr5	148550054	148551054	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	1119.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	80.66	101.37	53.65	69.5	66.24	75.56	111.96	122.04	90.56
Merged-chr2-152802384-3	chr2	152801885	152802885	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	B2_Mm2|SINE|B2	26104.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	116.7	128.1	64.75	97.16	100.77	79.58	67.6	87.99	38.72
Merged-chr10-44704350-3	chr10	44703865	44704865	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-245617.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	41.76	32.72	46.25	24.96	17.73	42.6	67.6	62.79	26.85
Merged-chr6-50299241-3	chr6	50298725	50299725	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 21 of 21)	intron (NM_027881, intron 21 of 21)	-37456.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	21.17	11.98	22.2	27.66	15.39	14.47	21.12	15.48	10.62
Merged-chr14-75016009-3	chr14	75015505	75016505	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198642)	promoter-TSS (NM_198642)	-22.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	70.93	70.04	74.92	87.71	62.51	61.09	121.46	93.74	38.1
Merged-chr8-116732893-3	chr8	116732328	116733328	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029441, exon 1 of 7)	5' UTR (NM_029441, exon 1 of 7)	163.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	42.9	25.34	49.95	39.13	19.13	38.58	70.76	19.46	34.35
Merged-chr13-46930012-3	chr13	46929489	46930489	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010617)	promoter-TSS (NM_010617)	-271.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	116.7	134.55	172.97	82.99	115.23	143.07	128.85	95.51	102.42
Merged-chr13-105266910-3	chr13	105266394	105267394	+	997.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 2 of 7)	intron (NM_001360891, intron 2 of 7)	26120.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	9.15	10.6	3.7	12.82	11.2	16.08	15.84	6.63	6.25
Merged-chr6-72113477-3	chr6	72112970	72113970	+	997.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9470.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	64.07	75.11	45.32	42.51	36.85	57.87	71.82	82.24	36.22
Merged-chr11-86582851-3	chr11	86582354	86583354	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	1304.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	264.29	242.37	173.89	269.21	240.72	199.34	277.78	308.63	155.51
Merged-chr7-141466256-3	chr7	141465749	141466749	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025103, exon 10 of 10)	3' UTR (NM_001025103, exon 10 of 10)	-1113.0	NM_009842	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	29.75	24.88	25.9	40.48	28.92	42.6	23.24	25.65	28.1
Merged-chrX-100637617-3	chrX	100637117	100638117	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008446, intron 4 of 29)	intron (NM_008446, intron 4 of 29)	11552.0	NM_008446	16571.0	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding	5.72	3.23	0.0	3.37	2.33	0.0	3.17	3.1	1.25
Merged-chr7-43423258-3	chr7	43422738	43423738	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6863.0	NM_177693	233187.0	Mm.267027	NM_177693	ENSMUSG00000093639	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	8.58	6.45	3.7	7.42	4.67	4.82	5.28	1.77	2.5
Merged-chr8-120104854-3	chr8	120104356	120105356	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	137.86	135.01	98.05	166.66	144.62	122.18	211.24	215.34	109.92
Merged-chr17-34898386-4	chr17	34897901	34898901	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286573)	promoter-TSS (NM_001286573)	-91.0	NM_001286575	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	66.36	42.39	69.37	64.1	39.19	71.54	92.94	62.79	45.59
Merged-chr18-20714028-3	chr18	20713514	20714514	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32390.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	45.76	28.11	39.77	24.96	15.86	33.76	31.69	16.8	21.86
Merged-chr3-21988280-3	chr3	21987711	21988711	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88441.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	47.48	41.47	40.7	33.06	37.79	16.08	38.02	26.97	21.86
Merged-chr14-52004253-3	chr14	52003725	52004725	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198249, intron 21 of 23)	intron (NM_198249, intron 21 of 23)	10333.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	11.44	3.23	7.4	3.37	1.87	3.22	0.0	2.21	2.5
Merged-chr17-78366284-3	chr17	78365800	78366800	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 13 of 16)	intron (NM_015800, intron 13 of 16)	51852.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	18.31	17.51	15.72	29.69	16.33	27.33	16.9	10.61	20.61
Merged-chr5-104979375-3	chr5	104978867	104979867	+	997.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 1 of 15)	intron (NM_030239, intron 1 of 15)	3350.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	42.33	44.24	56.42	46.56	38.25	42.6	40.14	42.01	44.34
Merged-chr12-54404342-2	chr12	54403859	54404859	+	997.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-13041.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	5.15	8.75	3.7	16.19	14.46	8.84	17.96	23.88	9.99
Merged-chr3-137956059-3	chr3	137955550	137956550	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	25499.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	80.66	57.6	29.6	87.71	46.65	49.03	77.1	75.17	23.73
Merged-chr17-34204523-3	chr17	34204030	34205030	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011530)	promoter-TSS (NM_011530)	51.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	109.26	86.17	93.42	72.87	50.38	72.34	82.38	78.26	72.45
Merged-chr5-149265056-3	chr5	149264560	149265560	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308462)	promoter-TSS (NM_001308462)	56.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	44.62	33.64	44.4	32.39	28.92	54.66	38.02	29.18	28.1
Merged-chr2-30604943-3	chr2	30604455	30605455	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030137, intron 1 of 1)	intron (NM_030137, intron 1 of 1)	9911.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	17.16	5.99	5.55	20.24	7.93	2.41	14.79	11.05	2.5
Merged-chr2-93941879-3	chr2	93941387	93942387	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15213.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	10.87	7.83	1.85	18.89	11.66	13.66	7.39	17.69	18.74
Merged-chr6-21985094-3	chr6	21984588	21985588	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	-822.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	4.58	3.23	1.85	3.37	1.4	3.22	4.22	3.54	7.49
Merged-chr17-5796073-3	chr17	5795565	5796565	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2592.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	22.31	15.67	3.7	14.84	9.33	23.31	17.96	12.38	8.12
Merged-chr9-104239272-3	chr9	104238774	104239774	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	23656.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	35.47	60.82	30.52	53.98	48.52	57.07	81.33	94.18	58.08
Merged-chr9-40325832-3	chr9	40325315	40326315	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-4492.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	141.3	109.67	67.52	103.91	66.71	40.19	78.16	64.56	28.1
Merged-chr2-165856190-3	chr2	165855680	165856680	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	1993.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	151.59	135.01	89.72	128.2	71.84	103.69	99.28	140.61	103.67
Merged-chr1-38129218-3	chr1	38128749	38129749	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359288, intron 1 of 25)	CpG	417.0	NM_001359287	56210.0	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	188.21	108.28	91.57	165.98	99.83	64.3	184.83	68.98	69.95
Merged-chr1-181846001-3	chr1	181845483	181846483	+	997.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3582.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	15.45	12.9	7.4	19.57	6.53	4.82	14.79	14.15	9.99
Merged-chr1-156684204-2	chr1	156683702	156684702	+	997.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145413, intron 7 of 7)	LTR41B|LTR|ERVL	-9863.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	37.18	26.73	15.72	27.66	19.59	14.47	2.11	4.42	1.25
Merged-chr1-131700580-3	chr1	131700084	131701084	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	11889.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	24.6	22.12	20.35	14.17	6.53	6.43	23.24	14.15	24.98
Merged-chr9-65533069-3	chr9	65532536	65533536	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47051.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	126.42	97.69	94.35	99.86	58.31	82.79	85.55	85.34	49.96
Merged-chr11-53794123-3	chr11	53793616	53794616	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	23643.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	173.9	162.2	154.47	146.41	107.76	118.16	179.55	196.32	82.44
Merged-chr10-86637099-3	chr10	86636588	86637588	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48439.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	4.58	1.84	0.0	8.1	3.73	3.22	1.06	2.65	2.5
Merged-chr16-91367267-3	chr16	91366756	91367756	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5527.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	50.91	38.71	37.0	76.24	57.85	40.99	32.74	34.05	17.49
Merged-chr11-22858232-3	chr11	22857742	22858742	+	997.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1493.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	118.42	156.21	150.77	122.12	102.63	80.38	134.14	141.05	116.79
Merged-chr8-127441340-2	chr8	127440844	127441844	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141692.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	11.44	3.69	3.7	14.84	9.8	11.25	100.34	136.19	76.82
Merged-chr4-129512276-5	chr4	129511765	129512765	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	57.21	74.65	48.1	59.38	40.12	73.95	14.79	24.32	43.72
Merged-chr16-21474825-1	chr16	21474325	21475325	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 15 of 46)	intron (NM_001081366, intron 15 of 46)	51707.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	10.3	5.53	9.25	14.84	15.86	8.04	5.28	6.63	6.25
Merged-chr11-69062939-4	chr11	69062421	69063421	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3146.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	147.02	128.1	60.12	109.98	77.44	90.83	128.85	168.47	103.67
Merged-chr3-152315842-3	chr3	152315318	152316318	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162375, intron 7 of 13)	intron (NM_001162375, intron 7 of 13)	24589.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	7.44	5.53	5.55	8.1	3.73	4.82	4.22	1.77	2.5
Merged-chr10-79506873-3	chr10	79506393	79507393	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24197.0	NR_105874	102465548.0		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	29.17	25.34	31.45	28.34	20.99	26.53	21.12	20.78	21.23
Merged-chr2-60089337-3	chr2	60088839	60089839	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	36401.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	33.75	22.58	19.42	39.13	20.06	24.92	31.69	20.34	11.87
Merged-chr7-143008192-3	chr7	143007698	143008698	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	2539.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	40.04	37.32	35.15	34.41	32.66	32.15	43.3	39.8	42.47
Merged-chr2-84531834-1	chr2	84531334	84532334	+	997.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-24961.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	50.34	36.4	55.5	33.06	28.46	25.72	26.4	49.52	25.61
Merged-chr7-66226068-3	chr7	66225563	66226563	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	116548.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	17.73	16.13	3.7	9.45	6.06	8.04	9.51	8.84	8.74
Merged-chr5-65490010-3	chr5	65489509	65490509	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	2826.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	8.01	11.52	13.87	13.49	0.93	6.43	12.67	5.31	16.24
Merged-chr18-80257780-3	chr18	80257250	80258250	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 2 of 5)	B4|SINE|B4	1444.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	52.63	72.8	61.05	47.23	54.11	49.03	30.63	36.7	30.6
Merged-chr2-130954551-3	chr2	130954064	130955064	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009730, intron 6 of 28)	intron (NM_009730, intron 6 of 28)	48069.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	19.45	12.9	3.7	31.71	15.39	4.02	19.01	16.36	6.25
Merged-chr15-76307401-3	chr15	76306907	76307907	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153122)	promoter-TSS (NM_153122)	-162.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	70.36	54.83	82.32	57.35	40.59	49.03	38.02	57.48	29.35
Merged-chr15-95851812-3	chr15	95851306	95852306	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-21734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	47.48	63.13	38.85	36.43	53.18	63.5	70.76	75.61	46.22
Merged-chr1-131052719-4	chr1	131052252	131053252	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008551)	TTS (NM_008551)	32907.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	135.0	108.75	86.95	54.65	34.52	29.74	100.34	98.16	63.7
Merged-chr2-59395524-6	chr2	59395010	59396010	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C1|LTR|ERVK	-8828.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	79.52	94.92	57.35	101.88	90.04	105.3	113.01	103.91	63.7
Merged-chr1-156024618-1	chr1	156024118	156025118	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	10199.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	54.92	42.85	34.22	85.69	55.98	49.83	45.42	37.58	23.73
Merged-chr16-11550537-1	chr16	11550037	11551037	+	997.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 14 of 20)	intron (NM_028964, intron 14 of 20)	144889.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.86	7.83	3.7	6.07	7.46	5.63	3.17	5.31	2.5
Merged-chr5-122894971-3	chr5	122894474	122895474	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	5376.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	101.83	99.53	88.8	99.86	58.78	73.14	79.21	99.05	48.71
Merged-chr8-125669923-3	chr8	125669438	125670438	+	997.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028908, exon 1 of 1)	exon (NM_028908, exon 1 of 1)	120.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	11.44	6.45	1.85	14.17	9.8	19.29	14.79	12.82	18.74
Merged-chr3-109340609-3	chr3	109340121	109341121	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-62.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	64.07	39.63	60.12	45.88	21.46	53.05	73.93	38.91	28.1
Merged-chr14-47359785-3	chr14	47359285	47360285	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-14075.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	81.8	85.25	77.7	100.53	104.03	103.69	92.94	113.64	53.08
Merged-chr8-85482015-3	chr8	85481519	85482519	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10598.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	13.16	18.89	14.8	24.96	22.39	35.37	20.07	13.71	16.24
Merged-chr6-108568078-3	chr6	108567584	108568584	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55083.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	48.05	36.4	33.3	56.0	41.99	57.07	49.64	39.8	9.37
Merged-chr8-104219270-3	chr8	104218763	104219763	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001141922)	TTS (NM_001141922)	29295.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	33.18	31.33	36.07	35.09	21.93	27.33	30.63	24.76	21.23
Merged-chr3-8957023-3	chr3	8956534	8957534	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	7112.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	20.02	11.98	9.25	22.27	13.06	18.49	23.24	21.22	5.62
Merged-chr13-21181003-3	chr13	21180495	21181495	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009054, intron 1 of 7)	CpG	1064.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	95.53	111.51	122.09	91.76	107.76	151.11	78.16	103.02	73.07
Merged-chrX-167850380-3	chrX	167849875	167850875	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359072, intron 1 of 16)	L1MA4A|LINE|L1	4702.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	10.87	5.53	0.0	8.77	7.0	8.04	8.45	3.1	8.74
Merged-chr12-86888238-3	chr12	86887732	86888732	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3418.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	200.22	268.18	200.71	186.9	159.55	237.12	250.32	400.6	191.73
Merged-chr5-121204536-3	chr5	121204059	121205059	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011290)	promoter-TSS (NM_011290)	58.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	115.55	109.67	79.55	130.9	131.09	93.24	126.74	110.54	64.33
Merged-chrX-9447362-3	chrX	9446877	9447877	+	996.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 8 of 12)	B1F|SINE|Alu	21947.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	27.46	19.35	15.72	23.62	33.12	30.54	24.29	27.86	21.86
Merged-chr19-23134253-3	chr19	23133820	23134820	+	996.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6906.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	20.02	23.04	18.5	89.06	61.11	75.56	94.0	52.18	72.45
Merged-chr14-45657349-4	chr14	45656924	45657924	+	996.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039593)	TTS (NR_039593)	629.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	114.41	98.15	115.62	131.57	82.57	142.27	229.19	165.37	146.14
Merged-chr9-21728534-3	chr9	21728034	21729034	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252659, intron 1 of 17)	RMER4B|LTR|ERVK	4958.0	NM_010700	16835.0	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	103.54	70.96	75.85	98.51	69.98	57.87	85.55	88.88	40.59
Merged-chr2-169958925-3	chr2	169958426	169959426	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	4261.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	18.88	29.49	8.32	43.18	28.92	29.74	32.74	27.41	31.85
Merged-chr17-80728633-3	chr17	80728124	80729124	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-599.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	89.24	50.69	69.37	78.94	43.85	64.3	85.55	50.41	38.72
Merged-chr10-75668041-3	chr10	75667547	75668547	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	CpG	-24039.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	102.4	95.84	108.22	92.44	84.9	117.35	92.94	111.43	61.2
Merged-chr8-78820094-3	chr8	78819595	78820595	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001191004, intron 1 of 4)	MIR3|SINE|MIR	1057.0	NM_001191004	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	37.18	35.94	21.27	38.46	34.52	34.56	47.53	51.73	25.61
Merged-chr5-72263833-3	chr5	72263317	72264317	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 11 of 22)	intron (NR_003966, intron 11 of 22)	60474.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	83.52	68.2	31.45	75.57	48.98	31.35	101.39	108.33	33.72
Merged-chr18-77704508-3	chr18	77704016	77705016	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	L1MC5|LINE|L1	9494.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	58.92	75.11	57.35	66.12	65.78	102.08	59.15	45.1	47.46
Merged-chr10-59886674-3	chr10	59886181	59887181	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	7090.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	56.63	84.78	59.2	53.3	49.92	57.87	47.53	70.3	41.84
Merged-chr7-118595386-3	chr7	118594894	118595894	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331204, intron 2 of 2)	intron (NM_001331204, intron 2 of 2)	-1903.0	NM_001105252	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	6.29	4.61	0.0	4.72	0.93	6.43	11.62	9.29	5.0
Merged-chr7-43995002-3	chr7	43994496	43995496	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010640)	promoter-TSS (NM_010640)	-881.0	NM_010640	16613.0	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	25.17	26.26	11.1	17.54	15.86	11.25	5.28	5.31	3.12
Merged-chr4-134460453-3	chr4	134459955	134460955	+	996.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-7865.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	10.87	4.61	5.55	16.87	7.0	8.04	5.28	2.65	2.5
Merged-chr13-45964086-7	chr13	45963573	45964573	+	996.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 1 of 6)	CpG	918.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	290.6	258.04	232.16	250.32	224.39	229.08	239.75	209.59	182.36
Merged-chr3-145750551-2	chr3	145750045	145751045	+	996.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-8147.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	6.29	6.91	9.25	6.75	6.53	15.27	11.62	14.15	16.24
Merged-chr2-89296660-1	chr2	89296160	89297160	+	996.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146789, exon 1 of 1)	exon (NM_146789, exon 1 of 1)	608.0	NM_146789	258785.0	Mm.377689	NM_146789	ENSMUSG00000075094	Olfr1230	MOR237-1	olfactory receptor 1230	protein-coding	9.72	2.76	7.4	6.75	4.67	3.22	5.28	2.65	2.5
Merged-chr3-51185613-3	chr3	51185115	51186115	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38832.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	101.83	111.05	41.62	123.47	137.15	106.9	221.8	314.38	144.89
Merged-chr11-70563868-1	chr11	70563368	70564368	+	996.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	987.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	17.73	14.75	15.72	29.01	14.46	36.97	30.63	19.9	17.49
Merged-chr4-102657426-3	chr4	102656944	102657944	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67601.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	88.1	120.26	71.22	81.64	64.84	101.28	73.93	67.65	49.34
Merged-chr14-118180423-3	chr14	118179916	118180916	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43289.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	62.35	74.19	24.05	68.15	64.38	43.4	36.97	44.22	35.6
Merged-chr5-100588339-3	chr5	100587826	100588826	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16121.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	90.96	110.13	74.0	80.29	55.98	74.75	105.62	137.07	106.79
Merged-chr11-106159479-3	chr11	106158934	106159934	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356459, exon 2 of 5)	5' UTR (NM_001356459, exon 2 of 5)	493.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	163.61	128.1	136.89	174.75	119.89	127.0	152.09	164.93	114.29
Merged-chr15-99702105-3	chr15	99701608	99702608	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031842)	promoter-TSS (NM_031842)	-179.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	77.23	57.14	62.9	76.92	66.71	81.18	80.27	65.88	41.22
Merged-chr1-39493814-3	chr1	39493322	39494322	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-15067.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	77.8	51.61	43.47	81.64	24.72	49.03	86.61	46.87	46.84
Merged-chr9-122901852-1	chr9	122901352	122902352	+	996.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1394.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	4.58	5.07	5.55	6.07	0.93	3.22	40.14	29.18	28.1
Merged-chr6-128856428-3	chr6	128855929	128856929	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	RMER17C-int|LTR|ERVK	-30114.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	9.15	18.89	19.42	18.22	12.13	21.7	16.9	4.42	12.49
Merged-chr7-19338227-3	chr7	19337717	19338717	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6854.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	4.0	4.15	1.85	5.4	0.47	1.61	2.11	4.86	0.0
Merged-chr2-164929234-3	chr2	164928727	164929727	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17477.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	16.02	6.91	1.85	6.07	3.73	8.04	10.56	3.98	8.74
Merged-chr13-100197148-3	chr13	100196645	100197645	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	intron (NM_001126182, intron 1 of 15)	4977.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	57.21	54.83	20.35	43.86	34.99	21.7	53.87	50.85	34.35
Merged-chr6-34620433-3	chr6	34619914	34620914	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	MLTR14|LTR|ERV1	21910.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	49.77	48.84	29.6	89.06	54.11	103.69	72.88	73.4	64.95
Merged-chr14-66812461-3	chr14	66811963	66812963	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	56137.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	21.74	23.96	16.65	28.34	21.93	25.72	21.12	15.92	26.23
Merged-chr17-55749968-3	chr17	55749464	55750464	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139138)	promoter-TSS (NM_139138)	-20.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	54.35	64.51	53.65	70.85	60.18	46.62	63.37	45.1	41.84
Merged-chr11-77606971-3	chr11	77606467	77607467	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	848.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	214.52	178.78	154.47	215.23	157.68	193.71	182.72	178.64	131.78
Merged-chr12-86892607-3	chr12	86892059	86893059	+	996.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	112.69	103.68	110.99	81.64	47.12	76.36	153.15	156.53	107.42
Merged-chr7-110190251-3	chr7	110189741	110190741	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31462.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	122.99	157.13	94.35	123.47	129.69	156.74	117.24	138.84	105.55
Merged-chr6-13860078-3	chr6	13859577	13860577	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11441.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	18.88	5.53	9.25	21.59	10.26	7.23	8.45	6.19	5.0
Merged-chr5-62756014-3	chr5	62755508	62756508	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	10169.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	37.76	23.04	11.1	22.94	16.33	2.41	10.56	16.8	11.24
Merged-chr3-146156400-3	chr3	146155880	146156880	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6206.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	157.89	170.49	101.74	133.59	116.16	109.32	111.96	134.42	58.71
Merged-chr5-101765772-3	chr5	101765254	101766254	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	624.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	253.42	238.23	195.17	184.2	189.87	145.49	213.35	188.81	121.16
Merged-chr19-6273978-3	chr19	6273471	6274471	+	996.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2925.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	42.33	24.42	15.72	36.43	18.19	48.23	23.24	3.1	23.73
Merged-chr5-125177874-3	chr5	125177377	125178377	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	CpG	1337.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	84.66	69.12	110.99	71.52	78.84	95.65	70.76	78.26	46.84
Merged-chr5-108001123-3	chr5	108000619	108001619	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14042.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	22.88	17.97	18.5	15.52	15.39	24.92	23.24	15.48	9.37
Merged-chr1-62736697-3	chr1	62736193	62737193	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	33376.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	35.47	23.5	24.05	12.82	6.06	4.82	9.51	5.31	8.74
Merged-chrX-74282732-3	chrX	74282229	74283229	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172154)	promoter-TSS (NM_001172154)	11.0	NM_001242615	66826.0	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	96.68	106.9	102.67	81.64	110.56	75.56	86.61	96.39	51.84
Merged-chr4-88641171-3	chr4	88640652	88641652	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3307.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	42.33	39.63	26.82	25.64	45.25	28.94	43.3	42.45	24.98
Merged-chr7-25220674-3	chr7	25220179	25221179	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207677)	promoter-TSS (NM_207677)	-746.0	NM_175436	210172.0	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	203.65	224.4	137.82	216.58	226.72	147.09	341.15	389.55	124.91
Merged-chr19-17144356-3	chr19	17143847	17144847	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	188229.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	32.61	36.86	21.27	54.65	38.72	56.27	25.35	18.13	24.98
Merged-chr17-3082392-3	chr17	3081887	3082887	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	1796.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	68.65	94.46	82.32	86.36	137.62	192.91	19.01	13.27	127.4
Merged-chr3-30595585-3	chr3	30595087	30596087	+	996.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	4283.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	108.12	112.43	97.12	151.14	147.42	104.49	167.93	141.05	105.55
Merged-chr1-181211511-4	chr1	181210938	181211938	+	996.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145514, exon 1 of 14)	5' UTR (NM_145514, exon 1 of 14)	540.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	355.82	287.53	320.96	277.98	215.06	233.1	348.54	198.09	204.22
Merged-chr14-121992665-1	chr14	121992165	121993165	+	996.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-27472.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	2.29	2.76	1.85	3.37	3.73	4.82	27.46	22.99	19.98
Merged-chr16-16086960-3	chr16	16086441	16087441	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	intron (NM_001355731, intron 5 of 18)	59910.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	45.76	35.48	32.37	38.46	23.79	20.09	40.14	22.55	24.98
Merged-chr15-58554238-3	chr15	58553784	58554784	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138816.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	88.67	94.92	98.97	84.34	55.98	55.46	83.44	105.24	58.71
Merged-chr16-38550192-3	chr16	38549684	38550684	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001300827)	promoter-TSS (NM_001300827)	72.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	12.01	14.28	7.4	13.49	10.73	12.86	24.29	12.82	6.25
Merged-chr2-90650175-3	chr2	90649658	90650658	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27057.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	33.18	30.41	11.1	47.9	13.06	33.76	27.46	32.28	23.11
Merged-chr1-75458346-3	chr1	75457849	75458849	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	7839.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	4.58	4.15	0.0	2.02	3.27	4.02	4.22	7.07	5.62
Merged-chr3-157535089-3	chr3	157534579	157535579	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152231)	promoter-TSS (NR_152231)	914.0	NM_001355386	53861.0	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	199.65	213.8	114.69	184.2	204.8	151.92	214.41	247.61	80.56
Merged-chr13-45266424-3	chr13	45265911	45266911	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-123331.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	154.45	113.35	86.02	155.19	116.63	98.87	70.76	84.9	78.07
Merged-chr7-123429994-3	chr7	123429498	123430498	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355050, intron 6 of 6)	intron (NM_001355050, intron 6 of 6)	22181.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	32.04	34.56	28.67	24.96	30.32	40.19	29.57	28.3	21.86
Merged-chr8-82402811-3	chr8	82402298	82403298	+	996.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-212.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	122.99	156.21	123.94	117.4	138.55	156.74	181.66	226.83	151.14
Merged-chr10-40229549-3	chr10	40229064	40230064	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042556, intron 7 of 9)	intron (NM_001042556, intron 7 of 9)	17415.0	NM_001042556	67239.0	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	108.69	109.67	76.77	128.2	109.16	71.54	192.23	183.94	63.08
Merged-chr6-22347699-3	chr6	22347201	22348201	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	8380.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	22.31	24.42	14.8	18.89	18.66	14.47	25.35	18.57	14.99
Merged-chr10-77391278-3	chr10	77390779	77391779	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	L1MC3|LINE|L1	26994.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	6.86	3.69	7.4	8.1	8.86	9.65	6.34	5.75	5.62
Merged-chr6-54952739-3	chr6	54952229	54953229	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	B4A|SINE|B4	18932.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	32.04	39.63	25.9	41.16	35.92	58.68	67.6	69.42	63.7
Merged-chr12-113154184-3	chr12	113153695	113154695	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007763)	TTS (NM_007763)	2183.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	34.32	44.24	32.37	51.95	34.99	50.64	44.36	29.18	29.98
Merged-chr11-57518572-3	chr11	57518052	57519052	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	92.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	98.39	89.85	93.42	76.24	68.11	116.55	142.59	93.3	63.08
Merged-chr14-51941390-3	chr14	51940874	51941874	+	996.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18601.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	137.29	123.95	91.57	103.23	82.11	101.28	66.54	40.24	25.61
Merged-chr11-31718282-1	chr11	31717782	31718782	+	996.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46420.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	1.14	3.23	3.7	18.22	6.06	6.43	6.34	3.54	7.49
Merged-chr9-104057317-2	chr9	104056812	104057812	+	996.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025692, intron 3 of 11)	intron (NM_025692, intron 3 of 11)	5809.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	20.59	26.26	24.05	22.27	21.93	15.27	2.11	2.21	11.87
Merged-chr10-128092750-4	chr10	128092242	128093242	+	996.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-41.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	125.28	105.52	131.34	99.18	83.51	93.24	146.81	126.02	92.43
Merged-chr12-111416936-3	chr12	111416455	111417455	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028807)	promoter-TSS (NM_028807)	-475.0	NM_001289487	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	23.45	17.05	1.85	14.84	6.53	7.23	23.24	9.29	9.37
Merged-chr12-102450618-3	chr12	102450129	102451129	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10816.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	209.94	179.25	178.52	194.99	197.33	235.51	228.14	257.34	173.62
Merged-chr1-72255617-3	chr1	72255117	72256117	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11624.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	38.9	34.1	48.1	37.11	32.19	48.23	31.69	30.95	28.73
Merged-chr16-56659014-3	chr16	56658521	56659521	+	996.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014399, intron 16 of 27)	intron (NM_001014399, intron 16 of 27)	58429.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	8.01	5.53	12.95	8.1	4.2	9.65	5.28	0.44	3.75
Merged-chr15-84232209-5	chr15	84231656	84232656	+	996.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133167, exon 1 of 13)	exon (NM_133167, exon 1 of 13)	113.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	218.52	225.78	208.11	242.22	268.71	247.57	216.52	237.0	143.02
Merged-chr3-96273728-2	chr3	96273225	96274225	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4025.0	NM_175666	319189.0	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	47.48	33.64	28.67	39.13	27.99	19.29	2.11	0.88	0.62
Merged-chr1-74376727-3	chr1	74376180	74377180	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	1477.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	165.9	204.13	153.54	246.95	233.25	205.77	217.57	204.72	124.91
Merged-chr12-105013261-3	chr12	105012743	105013743	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3434.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	10.87	6.45	0.0	11.47	10.26	13.66	4.22	3.1	8.74
Merged-chr4-126305622-3	chr4	126305125	126306125	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	L1MB8|LINE|L1	16078.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	41.19	30.87	29.6	12.14	4.2	6.43	8.45	4.42	5.0
Merged-chr6-83101601-3	chr6	83101147	83102147	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081266, exon 1 of 9)	5' UTR (NM_001081266, exon 1 of 9)	131.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	141.3	123.03	96.2	130.9	127.36	137.45	121.46	92.86	59.33
Merged-chr10-119056724-3	chr10	119056205	119057205	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6206.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	163.04	146.07	93.42	224.01	124.09	118.16	152.09	170.23	79.32
Merged-chr14-118594674-3	chr14	118594188	118595188	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	-2216.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	26.31	43.31	33.3	51.28	42.45	30.54	30.63	22.11	16.86
Merged-chr18-42513389-3	chr18	42512907	42513907	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360881, intron 1 of 20)	intron (NM_001360881, intron 1 of 20)	1920.0	NR_110344	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	20.59	25.8	14.8	20.24	14.93	12.86	57.03	39.8	21.23
Merged-chr2-21187492-1	chr2	21186992	21187992	+	996.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	17873.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	36.61	46.54	29.6	34.41	19.13	34.56	19.01	23.43	27.48
Merged-chr16-21652854-3	chr16	21652401	21653401	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	41764.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	16.02	13.82	27.75	29.69	15.86	47.42	33.8	28.74	27.48
Merged-chr8-61621472-2	chr8	61621005	61622005	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-30336.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	14.3	5.53	3.7	10.12	2.8	11.25	3.17	1.33	6.25
Merged-chr13-113267408-3	chr13	113266896	113267896	+	996.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57737.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	7.44	6.91	3.7	4.72	7.46	5.63	4.22	3.98	4.37
Merged-chr19-41442566-3	chr19	41442075	41443075	+	996.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57505.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	50.91	61.28	40.7	49.25	37.79	45.82	60.2	44.66	43.09
Merged-chr11-53748821-3	chr11	53748319	53749319	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	14835.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	23.45	11.98	13.87	25.64	20.53	19.29	36.97	39.8	12.49
Merged-chr2-164456998-3	chr2	164456495	164457495	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3976.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	44.05	21.66	13.87	25.64	13.53	16.88	39.08	13.71	23.73
Merged-chr12-40017160-3	chr12	40016663	40017663	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20213.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	38.9	42.85	16.65	43.18	62.51	42.6	50.7	39.35	21.23
Merged-chr2-19059470-3	chr2	19058986	19059986	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	61167.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	16.02	20.27	8.32	10.8	6.53	3.22	7.39	10.17	10.62
Merged-chr13-110395876-3	chr13	110395371	110396371	+	996.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152804, intron 1 of 13)	intron (NM_152804, intron 1 of 13)	827.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	32.04	25.8	15.72	51.95	36.85	31.35	26.4	16.8	14.36
Merged-chr4-140963122-3	chr4	140962614	140963614	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 1 of 7)	Lx8|LINE|L1	1843.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	80.09	77.41	119.32	80.29	66.24	98.06	108.79	133.09	74.94
Merged-chr6-48708270-3	chr6	48707778	48708778	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153175)	promoter-TSS (NM_153175)	-34.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	100.11	73.26	30.52	10.12	16.33	16.08	9.51	20.34	7.49
Merged-chr2-4652116-3	chr2	4651608	4652608	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356451)	promoter-TSS (NM_001356451)	27.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	47.48	47.46	42.55	29.69	50.85	47.42	53.87	56.16	28.1
Merged-chr10-14086370-3	chr10	14085875	14086875	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119996.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	68.65	51.61	27.75	49.93	34.52	30.54	86.61	80.92	10.62
Merged-chr1-180764087-3	chr1	180763598	180764598	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38055.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	10.87	7.83	7.4	13.49	2.8	10.45	3.17	11.94	5.0
Merged-chr14-45552396-3	chr14	45551899	45552899	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045809, intron 3 of 6)	intron (NR_045809, intron 3 of 6)	8689.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	14.3	11.06	29.6	10.12	17.26	17.68	13.73	16.36	23.11
Merged-chr9-95552221-3	chr9	95551723	95552723	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7594.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	30.89	23.5	37.92	26.31	20.99	33.76	34.85	31.39	14.99
Merged-chr18-39141181-3	chr18	39140699	39141699	+	996.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	MTD|LTR|ERVL-MaLR	148054.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	57.78	56.68	37.92	54.65	59.71	65.11	52.81	70.75	56.21
Merged-chr18-20713596-3	chr18	20713103	20714103	+	996.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	intron (NM_019737, intron 3 of 8)	32801.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	49.77	33.18	47.17	28.34	19.59	39.39	33.8	22.11	29.35
Merged-chr12-36381943-4	chr12	36381414	36382414	+	996.34375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289503)	promoter-TSS (NM_001289503)	-233.0	NM_001289503	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	165.9	183.85	133.19	202.42	163.28	158.35	286.23	219.76	102.42
Merged-chr9-70282323-3	chr9	70281858	70282858	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	75008.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	8.58	5.53	7.4	8.77	6.53	0.0	6.34	2.21	0.62
Merged-chr6-108306436-3	chr6	108305914	108306914	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	93318.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	71.51	105.52	62.9	80.97	97.03	113.33	69.71	78.26	59.33
Merged-chr2-66143461-3	chr2	66142981	66143981	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18688.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	42.33	45.16	57.35	45.21	28.46	36.17	39.08	24.76	32.48
Merged-chr19-61084267-3	chr19	61083787	61084787	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 12 of 15)	intron (NM_018869, intron 12 of 15)	56553.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	16.59	10.14	1.85	21.59	11.2	19.29	6.34	3.1	2.5
Merged-chr6-128798897-3	chr6	128798384	128799384	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-10243.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	96.11	96.3	50.87	90.41	78.37	60.28	90.83	112.75	79.94
Merged-chr3-101836296-3	chr3	101835808	101836808	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172295)	promoter-TSS (NM_172295)	-85.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	64.07	59.44	51.8	69.5	42.45	49.83	66.54	54.83	34.35
Merged-chr5-147046489-1	chr5	147045989	147046989	+	996.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	30083.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	30.89	14.75	15.72	35.76	26.59	12.86	3.17	2.21	2.5
Merged-chr6-122990082-3	chr6	122989570	122990570	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005860)	promoter-TSS (NM_001005860)	-297.0	NM_001005860	474145.0	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	40.04	43.77	29.6	33.74	37.32	38.58	34.85	29.18	19.36
Merged-chr10-127324713-3	chr10	127324209	127325209	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359657)	promoter-TSS (NM_001359657)	-933.0	NM_001359657	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	29.75	21.66	22.2	24.96	7.46	32.15	36.97	34.05	27.48
Merged-chr7-107683834-3	chr7	107683329	107684329	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357437, intron 2 of 23)	intron (NM_001357437, intron 2 of 23)	-8014.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	19.45	25.8	11.1	22.94	21.46	29.74	20.07	13.71	12.49
Merged-chr18-35058496-1	chr18	35057996	35058996	+	996.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60416.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	2.29	3.69	1.85	2.7	3.27	0.0	4.22	1.33	5.0
Merged-chr9-123949634-3	chr9	123949151	123950151	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	19041.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	56.06	59.9	62.9	50.6	40.59	41.8	32.74	35.37	22.48
Merged-chr8-70552029-1	chr8	70551529	70552529	+	996.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	12354.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	15.45	11.98	21.27	43.86	53.65	38.58	7.39	7.07	3.12
Merged-chr15-75894431-3	chr15	75893946	75894946	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172607)	promoter-TSS (NM_172607)	35.0	NM_172607	223646.0	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	30.89	27.19	35.15	14.84	22.86	30.54	27.46	16.36	15.61
Merged-chr3-126945052-1	chr3	126944552	126945552	+	996.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001327939, exon 37 of 46)	exon (NM_001327939, exon 37 of 46)	-1666.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.72	0.46	3.7	4.72	3.73	0.0	16.9	15.92	19.98
Merged-chr10-87842682-3	chr10	87842188	87843188	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-15577.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	109.83	128.1	74.92	163.28	162.81	107.71	176.38	179.96	83.69
Merged-chr10-41584693-3	chr10	41584193	41585193	+	996.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 33 of 47)	MLT1L|LTR|ERVL-MaLR	16677.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	18.88	14.28	18.5	11.47	8.86	13.66	33.8	14.59	19.36
Merged-chr4-119293075-3	chr4	119292571	119293571	+	996.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1442.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	280.31	333.15	172.04	201.74	228.12	213.0	214.41	239.21	130.53
Merged-chr11-107341576-3	chr11	107341089	107342089	+	996.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	129131.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	145.87	156.21	76.77	169.35	136.69	105.3	175.33	211.36	83.06
Merged-chr7-19318732-4	chr7	19318224	19319224	+	996.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8679.0	NM_001347586	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	132.72	84.78	50.87	115.38	58.31	67.52	102.45	67.65	47.46
Merged-chr17-33930989-5	chr17	33930473	33931473	+	996.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1079.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	51.48	33.64	45.32	50.6	34.52	51.44	65.48	72.07	52.46
Merged-chr11-94989846-3	chr11	94989344	94990344	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1368.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	42.33	42.85	61.05	35.09	21.46	60.28	49.64	33.6	32.48
Merged-chr1-153894464-3	chr1	153893971	153894971	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2825.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	16.02	10.6	12.95	16.19	9.8	13.66	3.17	1.77	7.49
Merged-chr15-102247696-3	chr15	102247214	102248214	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	CpG	-1214.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	218.52	153.9	173.89	110.65	68.11	68.32	236.59	159.18	91.81
Merged-chrX-10715784-3	chrX	10715276	10716276	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1589.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	35.47	49.76	20.35	51.28	33.59	47.42	83.44	110.54	48.09
Merged-chr19-43571189-3	chr19	43570702	43571702	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41123.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.0	4.15	7.4	4.05	0.93	1.61	4.22	0.0	2.5
Merged-chr2-120481721-3	chr2	120481221	120482221	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109761, intron 2 of 20)	intron (NM_001109761, intron 2 of 20)	4812.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	10.87	8.75	5.55	16.87	11.66	12.86	13.73	7.96	13.74
Merged-chr15-101375124-3	chr15	101374621	101375621	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4996.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	30.32	22.58	23.12	33.06	22.86	25.72	9.51	13.27	18.74
Merged-chr15-101981507-3	chr15	101981003	101982003	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22839.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	85.24	95.38	78.62	99.18	113.83	112.53	117.24	83.57	78.07
Merged-chr4-138434676-3	chr4	138434176	138435176	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026689)	promoter-TSS (NM_026689)	4.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	195.64	156.67	122.09	145.06	138.09	121.37	205.96	188.36	108.67
Merged-chr16-50437935-3	chr16	50437443	50438443	+	996.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-5477.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	29.75	17.51	21.27	35.09	22.39	20.09	26.4	19.01	6.87
Merged-chr10-81551753-3	chr10	81551263	81552263	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6717.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	13.16	7.37	3.7	12.14	5.6	16.08	5.28	4.86	9.99
Merged-chr11-120951037-3	chr11	120950535	120951535	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038654, intron 1 of 4)	CpG	1968.0	NM_001038654	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	5.72	3.69	0.0	10.8	3.73	1.61	6.34	3.1	7.49
Merged-chr1-172490437-3	chr1	172489953	172490953	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033608, intron 5 of 20)	intron (NM_033608, intron 5 of 20)	8136.0	NM_033608	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	13.73	2.3	0.0	8.77	5.13	4.82	8.45	3.1	2.5
Merged-chr14-68655869-3	chr14	68655373	68656373	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183366)	promoter-TSS (NM_183366)	-31.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	6.86	2.76	3.7	3.37	0.0	8.04	4.22	4.42	1.25
Merged-chr4-87944554-3	chr4	87944063	87945063	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	L1ME3A|LINE|L1	88844.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.0	3.69	2.77	4.72	1.87	1.61	4.22	6.63	0.0
Merged-chr8-126921038-3	chr8	126920547	126921547	+	996.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24874.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	104.11	121.19	69.37	130.9	114.29	96.45	107.73	114.96	63.08
Merged-chr11-103171038-3	chr11	103170529	103171529	+	996.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077698)	promoter-TSS (NM_001077698)	-109.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	29.75	21.66	33.3	26.99	21.93	30.54	25.35	12.82	14.36
Merged-chr4-33347273-3	chr4	33346777	33347777	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 8 of 15)	intron (NM_001305273, intron 8 of 15)	36966.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	5.72	4.15	1.85	12.14	5.13	16.08	9.51	15.48	4.37
Merged-chr4-139382535-3	chr4	139382049	139383049	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160319, intron 1 of 105)	intron (NM_001160319, intron 1 of 105)	1890.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	135.58	122.57	86.02	113.35	74.64	72.34	177.44	140.61	87.43
Merged-chr15-97673094-3	chr15	97672598	97673598	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32724.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	42.33	37.78	12.95	55.33	37.32	37.78	28.52	23.43	17.49
Merged-chr10-80101221-3	chr10	80100720	80101720	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359635)	promoter-TSS (NM_001359635)	-33.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	25.74	44.7	43.47	24.96	24.26	53.85	86.61	79.59	51.84
Merged-chr9-13518166-3	chr9	13517666	13518666	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86805.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	34.9	20.27	5.55	33.74	19.13	35.37	16.9	21.22	16.24
Merged-chr9-32521615-3	chr9	32521139	32522139	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	L2b|LINE|L2	19813.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	101.83	94.92	72.15	118.08	66.71	86.81	77.1	89.32	50.59
Merged-chr8-35400592-3	chr8	35400086	35401086	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24845.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	15.45	17.51	13.87	18.22	21.93	26.53	29.57	30.95	22.48
Merged-chr3-31390147-3	chr3	31389637	31390637	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-79818.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	17.16	15.67	24.97	40.48	34.06	56.27	52.81	37.58	24.36
Merged-chr6-3386794-3	chr6	3386295	3387295	+	996.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	12776.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	6.29	20.27	11.1	13.49	13.06	16.08	27.46	34.05	31.85
Merged-chr11-54492759-2	chr11	54492264	54493264	+	996.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 9 of 17)	intron (NM_173753, intron 9 of 17)	-30081.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	19.45	28.57	15.72	53.3	35.45	40.19	51.75	51.29	30.6
Merged-chr1-120123164-2	chr1	120122662	120123662	+	996.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1975.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	42.33	50.69	40.7	42.51	49.45	36.97	24.29	16.36	18.11
Merged-chr17-17624059-3	chr17	17623590	17624590	+	996.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	CpG	399.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	164.75	151.6	165.57	153.84	140.89	206.57	162.65	170.68	150.51
Merged-chr9-70830328-3	chr9	70829849	70830849	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	104459.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	42.9	31.79	22.2	41.16	23.33	27.33	41.19	28.3	18.74
Merged-chr11-117724717-3	chr11	117724209	117725209	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54939.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	46.91	51.61	25.9	72.19	55.05	52.25	55.98	54.39	40.59
Merged-chr12-112724233-3	chr12	112723722	112724722	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024602, intron 1 of 18)	MER45A|DNA|hAT-Tip100	2048.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	4.0	4.15	1.85	3.37	1.87	1.61	2.11	0.44	7.49
Merged-chr9-95036374-3	chr9	95035836	95036836	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 11 of 15)	MTE2a|LTR|ERVL-MaLR	284507.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	11.44	5.53	14.8	12.82	9.8	1.61	7.39	1.33	3.75
Merged-chr4-119536784-3	chr4	119536290	119537290	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004178, intron 1 of 3)	MT2B2|LTR|ERVL	1979.0	NM_001004178	433752.0	Mm.425205	NM_001004178	ENSMUSG00000087385	Frg2f1	AA415398	FSHD region gene 2 family member 1	protein-coding	10.87	13.36	12.95	19.57	13.53	20.9	14.79	14.15	8.74
Merged-chr8-84811066-3	chr8	84810541	84811541	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10703.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	6.29	1.84	3.7	6.75	1.4	3.22	5.28	3.54	0.62
Merged-chr15-78248603-3	chr15	78248124	78249124	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3813.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	54.92	40.55	37.92	74.22	35.92	50.64	42.25	22.55	21.23
Merged-chr13-99100687-3	chr13	99100173	99101173	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12752.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	9.15	11.06	16.65	22.94	14.0	14.47	12.67	9.73	8.12
Merged-chr9-99179868-3	chr9	99179376	99180376	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39665.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	167.04	147.91	135.04	157.88	139.95	110.92	183.78	192.34	99.92
Merged-chr6-70714475-3	chr6	70713988	70714988	+	996.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77687.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.15	0.92	7.4	2.7	1.87	2.41	5.28	0.88	3.75
Merged-chr4-99182778-1	chr4	99182278	99183278	+	996.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11156.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	5.72	9.22	0.0	10.8	1.87	12.86	11.62	4.42	2.5
Merged-chr8-80916677-1	chr8	80916177	80917177	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-36158.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	8.01	8.75	3.7	19.57	13.53	20.09	8.45	6.63	8.12
Merged-chr4-6366491-3	chr4	6365990	6366990	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	810.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	390.71	569.07	258.99	441.27	538.82	341.61	433.04	636.72	259.8
Merged-chr11-75653406-3	chr11	75652909	75653909	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	1259.0	NM_001080774	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	260.86	206.89	160.02	238.85	181.47	139.86	201.73	246.29	126.15
Merged-chr3-90254640-1	chr3	90254140	90255140	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357152, intron 1 of 9)	CpG	782.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	122.42	106.44	91.57	128.2	112.43	134.23	139.42	103.91	63.7
Merged-chr16-45736912-1	chr16	45736412	45737412	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272070, exon 4 of 6)	exon (NM_001272070, exon 4 of 6)	6043.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	6.86	5.07	9.25	4.72	5.13	11.25	0.0	2.65	3.75
Merged-chr7-129401461-3	chr7	129400971	129401971	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144377.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	14.3	16.13	0.0	28.34	13.06	14.47	19.01	10.61	14.99
Merged-chr5-137630775-3	chr5	137630257	137631257	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1634.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	208.23	199.06	189.62	155.19	112.9	221.04	198.56	229.04	158.01
Merged-chr12-46857007-1	chr12	46856507	46857507	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-38232.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	9.15	1.38	9.25	6.07	1.87	1.61	6.34	1.33	2.5
Merged-chr7-30273477-1	chr7	30272977	30273977	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152437, intron 3 of 32)	intron (NR_152437, intron 3 of 32)	-6617.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	2.86	4.61	0.92	8.1	2.8	14.47	1.06	1.33	8.74
Merged-chr10-93168194-3	chr10	93167693	93168693	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	5408.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	54.92	59.9	43.47	89.06	46.18	72.34	98.23	80.03	52.46
Merged-chr5-33352156-3	chr5	33351654	33352654	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	ID_B1|SINE|B4	16582.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	124.71	156.67	68.45	118.75	156.28	134.23	178.5	158.3	64.33
Merged-chr5-135570674-1	chr5	135570174	135571174	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019577, exon 3 of 3)	3' UTR (NM_019577, exon 3 of 3)	2375.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	33.75	32.25	23.12	54.65	57.38	59.48	24.29	32.72	21.86
Merged-chr13-9277332-5	chr13	9276896	9277896	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	871.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	153.88	134.09	213.66	189.6	138.09	141.47	161.6	118.5	84.31
Merged-chr11-79711101-4	chr11	79710641	79711641	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029579)	promoter-TSS (NR_029579)	-828.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	33.75	28.11	15.72	53.98	29.39	38.58	28.52	13.71	13.12
Merged-chr1-180222281-1	chr1	180221781	180222781	+	996.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	23669.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	2.86	4.15	0.0	4.72	1.4	4.82	3.17	1.77	5.0
Merged-chr17-65884360-1	chr17	65883860	65884860	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009067, intron 1 of 9)	CpG	563.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	51.48	36.4	46.25	49.25	40.59	43.4	51.75	44.66	49.96
Merged-chr1-185187494-1	chr1	185186994	185187994	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16674.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	5.15	3.69	2.77	6.07	3.73	3.22	3.17	3.1	6.25
Merged-chr10-49049451-2	chr10	49048947	49049947	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	738490.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	18.88	16.59	11.1	130.22	80.24	73.14	66.54	57.04	18.74
Merged-chr13-105426171-3	chr13	105425667	105426667	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-17526.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	4.58	5.99	1.85	4.05	3.73	1.61	6.34	0.88	3.12
Merged-chr14-40932463-1	chr14	40931963	40932963	+	996.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	15746.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	28.03	34.56	42.55	26.31	32.66	41.8	29.57	23.43	21.23
Merged-chr16-35047464-3	chr16	35046964	35047964	+	996.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25043.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	19.45	19.81	31.45	17.54	11.2	29.74	7.39	13.71	17.49
Merged-chr7-100663376-3	chr7	100662857	100663857	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013746)	promoter-TSS (NM_013746)	-963.0	NM_001163182	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	7.44	6.45	12.95	5.4	2.8	11.25	4.22	9.29	1.25
Merged-chrX-135738931-3	chrX	135738417	135739417	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3775.0	NM_001004359	67298.0	Mm.271980	NM_026081	ENSMUSG00000043384	Gprasp1	2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding	12.01	10.6	5.55	15.52	6.53	9.65	12.67	11.94	5.0
Merged-chr15-78305712-3	chr15	78305205	78306205	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007781)	promoter-TSS (NM_007781)	16.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	45.19	43.31	63.82	52.63	32.19	56.27	63.37	36.7	27.48
Merged-chr6-136808840-3	chr6	136808327	136809327	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	579.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	509.13	507.78	420.85	460.16	452.98	323.93	351.71	470.02	271.67
Merged-chr1-153492059-3	chr1	153491567	153492567	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4407.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	65.21	39.63	78.62	77.59	47.12	87.61	77.1	40.24	60.58
Merged-chr6-129049275-3	chr6	129048779	129049779	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024263, intron 1 of 4)	intron (NR_024263, intron 1 of 4)	3378.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	4.0	4.15	5.55	16.87	9.8	3.22	5.28	1.77	2.5
Merged-chr4-97777762-3	chr4	97777292	97778292	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122953, exon 1 of 10)	5' UTR (NM_001122953, exon 1 of 10)	166.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	46.34	27.65	54.57	42.51	18.19	36.97	38.02	17.69	26.23
Merged-chr11-79120290-3	chr11	79119770	79120770	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26203.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	34.9	23.04	13.87	42.51	14.93	6.43	28.52	16.36	17.49
Merged-chr9-107569038-3	chr9	107568544	107569544	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-119.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	65.79	52.99	60.12	56.0	40.12	73.14	70.76	51.29	43.09
Merged-chr19-4409286-3	chr19	4408785	4409785	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12208.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	4.0	7.37	1.85	9.45	6.53	6.43	2.11	5.31	11.24
Merged-chr5-43235303-3	chr5	43234804	43235804	+	995.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	50.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	63.5	40.09	50.87	87.04	66.71	69.13	102.45	61.9	63.08
Merged-chr17-87155376-2	chr17	87154887	87155887	+	995.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	39555.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	76.66	96.3	105.44	95.14	124.09	103.69	11.62	5.75	2.5
Merged-chr8-25062107-3	chr8	25061589	25062589	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 5 of 11)	intron (NM_031257, intron 5 of 11)	-23127.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	44.62	57.14	61.97	39.81	38.25	70.73	57.03	88.88	39.35
Merged-chr11-20742475-3	chr11	20741976	20742976	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290545)	promoter-TSS (NM_001290545)	-920.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	282.02	349.74	127.64	196.34	235.59	148.7	257.71	320.57	126.15
Merged-chr5-64376672-3	chr5	64376168	64377168	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	91274.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	138.44	119.34	55.5	98.51	57.38	82.79	121.46	137.07	91.81
Merged-chr3-65927909-3	chr3	65927413	65928413	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30336.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.3	15.21	12.95	12.82	7.93	9.65	12.67	10.61	7.49
Merged-chr16-75962188-3	chr16	75961682	75962682	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38602.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	114.41	110.59	123.94	76.24	51.32	70.73	84.49	82.69	65.58
Merged-chr1-79684239-3	chr1	79683752	79684752	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-12280.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	8.01	6.91	12.02	3.37	7.93	3.22	11.62	10.17	5.0
Merged-chr3-90433050-3	chr3	90432565	90433565	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145540, exon 1 of 30)	5' UTR (NM_145540, exon 1 of 30)	571.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	98.39	123.03	164.64	139.67	131.09	168.8	125.69	128.67	106.79
Merged-chr7-116597109-3	chr7	116596618	116597618	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92749.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.0	1.38	12.95	11.47	7.0	13.66	6.34	5.31	5.62
Merged-chr5-112950424-3	chr5	112949927	112950927	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-54065.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	78.37	80.18	69.37	66.12	71.38	69.13	78.16	67.65	39.97
Merged-chr7-16891775-3	chr7	16891277	16892277	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010320)	promoter-TSS (NM_010320)	-9.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.57	1.84	3.7	6.07	3.73	10.45	7.39	0.88	10.62
Merged-chr17-83682140-3	chr17	83681628	83682628	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24035.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	21.74	28.57	39.77	29.01	24.26	39.39	35.91	27.86	32.48
Merged-chr4-120914028-3	chr4	120913533	120914533	+	995.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	10972.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	35.47	32.25	23.12	19.57	18.19	24.11	14.79	24.76	19.36
Merged-chr6-128437913-3	chr6	128437436	128438436	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028592)	promoter-TSS (NR_028592)	720.0	NM_010219	14228.0	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	57.21	34.1	38.85	57.35	68.58	60.28	64.43	38.47	28.1
Merged-chr12-84847691-3	chr12	84847214	84848214	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 3 of 34)	intron (NM_013589, intron 3 of 34)	-28088.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	41.19	27.19	26.82	56.68	20.99	48.23	21.12	12.82	15.61
Merged-chr3-67463816-3	chr3	67463311	67464311	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016753)	promoter-TSS (NM_016753)	96.0	NM_016753	17035.0	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	26.89	12.9	27.75	16.87	13.06	20.09	26.4	19.9	23.73
Merged-chrX-160510449-3	chrX	160509962	160510962	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358966, intron 1 of 33)	MLTR25A|LTR|ERVK	8300.0	NM_001177878	110094.0	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	29.17	27.65	14.8	33.06	26.12	41.8	34.85	40.68	14.36
Merged-chrX-14628784-3	chrX	14628289	14629289	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	417641.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	26.89	28.57	31.45	31.04	27.99	24.11	25.35	23.88	22.48
Merged-chr3-8734040-3	chr3	8733578	8734578	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67040.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	29.17	28.11	18.5	31.71	28.92	14.47	17.96	19.01	5.0
Merged-chr7-143706870-3	chr7	143706371	143707371	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199227, intron 7 of 21)	intron (NM_001199227, intron 7 of 21)	-20996.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	1.72	1.38	0.0	4.72	0.0	6.43	1.06	1.33	5.0
Merged-chr3-130796691-3	chr3	130796192	130797192	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66294.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	17.73	15.21	11.1	34.41	20.53	30.54	11.62	12.38	11.24
Merged-chr10-118814989-3	chr10	118814493	118815493	+	995.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	53910.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	52.63	36.4	38.85	47.9	32.66	57.87	55.98	65.0	66.2
Merged-chr7-127376097-3	chr7	127375602	127376602	+	995.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175560)	promoter-TSS (NM_175560)	-52.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	31.46	29.95	23.12	39.13	45.25	49.83	42.25	28.3	28.1
Merged-chr16-55821064-3	chr16	55820581	55821581	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1057.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	284.31	362.18	202.56	295.53	348.02	196.12	272.5	336.05	157.38
Merged-chr11-69012518-3	chr11	69012000	69013000	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3411.0	NM_001281465	68964.0	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	33.18	31.33	37.0	33.74	34.52	31.35	68.65	64.56	41.84
Merged-chr1-45902099-3	chr1	45901612	45902612	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	23482.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	32.61	47.0	31.45	32.39	33.12	48.23	34.85	30.95	43.09
Merged-chr5-76175241-3	chr5	76174748	76175748	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-I_MM-int|LTR|ERVK	-8632.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	14.3	11.52	5.55	10.12	16.79	15.27	3.17	3.98	5.0
Merged-chr14-67098334-3	chr14	67097796	67098796	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25825.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	2.86	4.61	12.95	6.07	4.67	3.22	3.17	3.54	1.87
Merged-chr10-118081668-3	chr10	118081147	118082147	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60140.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	194.5	171.87	146.14	258.42	140.42	125.39	222.86	258.67	117.41
Merged-chr1-144307235-3	chr1	144306754	144307754	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58150.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	53.77	49.3	38.85	64.1	60.18	47.42	50.7	50.41	28.73
Merged-chr14-16379509-3	chr14	16379016	16380016	+	995.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	L1M4|LINE|L1	14310.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	8.58	17.05	12.02	16.19	12.13	27.33	31.69	13.71	26.23
Merged-chr11-85249582-2	chr11	85249081	85250081	+	995.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	14415.0	NR_028329	654810.0	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	6.86	10.6	14.8	27.66	39.19	80.38	27.46	43.77	48.09
Merged-chr2-167939735-3	chr2	167939252	167940252	+	995.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	7425.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	66.93	45.62	55.5	70.17	30.32	53.85	65.48	53.5	33.1
Merged-chr16-3714911-3	chr16	3714410	3715410	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019453, intron 2 of 9)	intron (NM_019453, intron 2 of 9)	3214.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	8.58	18.89	7.4	47.23	47.12	72.34	80.27	68.09	63.08
Merged-chr1-152622011-3	chr1	152621497	152622497	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	3220.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	50.91	77.41	33.3	105.93	61.11	78.77	66.54	81.8	42.47
Merged-chr3-101596346-3	chr3	101595856	101596856	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	8351.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	160.75	176.48	86.02	175.43	144.15	136.64	114.07	148.13	78.07
Merged-chr16-10835079-3	chr16	10834578	10835578	+	995.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162932)	promoter-TSS (NM_001162932)	19.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	8.01	1.84	0.0	6.75	0.47	3.22	3.17	2.21	2.5
Merged-chr2-144267842-3	chr2	144267344	144268344	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024225, intron 1 of 12)	intron (NM_024225, intron 1 of 12)	-1642.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	145.87	182.47	85.1	151.81	188.0	81.18	228.14	260.88	98.05
Merged-chr5-35728512-3	chr5	35728029	35729029	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	747.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	322.64	345.13	173.89	437.89	485.64	302.22	457.33	602.23	178.61
Merged-chr13-99331676-1	chr13	99331176	99332176	+	995.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 6 of 9)	intron (NM_026873, intron 6 of 9)	13002.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	4.0	5.07	3.7	4.05	3.73	4.82	25.35	21.22	20.61
Merged-chr1-51494089-3	chr1	51493606	51494606	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15707.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	38.9	57.14	49.95	45.88	41.99	38.58	53.87	57.92	47.46
Merged-chr13-93718300-1	chr13	93717800	93718800	+	995.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028772, intron 13 of 15)	MTE2a|LTR|ERVL-MaLR	875.0	NR_045086	105364.0	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	4.58	2.3	1.85	2.02	3.73	3.22	26.4	14.59	24.98
Merged-chr11-115712580-3	chr11	115712118	115713118	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4021.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	49.2	42.39	61.05	29.69	27.06	47.42	35.91	23.88	28.73
Merged-chr4-137995549-3	chr4	137995043	137996043	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	intron (NM_001256195, intron 2 of 34)	2087.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	185.35	140.54	144.29	211.19	97.97	145.49	127.8	135.75	64.33
Merged-chr1-191270313-3	chr1	191269795	191270795	+	995.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45841.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	201.93	149.29	71.22	254.37	190.8	176.83	118.29	114.96	64.95
Merged-chr2-70992931-2	chr2	70992439	70993439	+	995.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	B4A|SINE|B4	25435.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	18.31	15.67	33.3	20.24	19.13	19.29	38.02	46.87	29.98
Merged-chr8-11180069-2	chr8	11179566	11180566	+	995.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-132739.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	20.02	9.68	18.5	19.57	15.39	27.33	5.28	1.33	9.99
Merged-chr3-18624036-2	chr3	18623541	18624541	+	995.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143564.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	5.15	3.69	1.85	16.19	28.92	45.82	28.52	26.09	19.98
Merged-chr8-13159650-2	chr8	13159204	13160204	+	995.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	543.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	421.03	402.73	364.43	387.29	384.87	282.93	441.49	353.73	255.43
Merged-chr3-148961076-3	chr3	148960567	148961567	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6432.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	36.61	48.84	34.22	80.97	81.64	49.83	42.25	35.82	16.86
Merged-chr11-20532022-3	chr11	20531517	20532517	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11236.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	141.3	92.62	66.6	147.76	92.37	110.92	119.35	79.59	64.95
Merged-chr17-88557249-3	chr17	88556758	88557758	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 9 of 21)	intron (NM_028658, intron 9 of 21)	27134.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	16.59	9.68	3.7	18.89	7.93	8.04	10.56	10.17	14.36
Merged-chr2-91956114-3	chr2	91955610	91956610	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-5762.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	22.88	29.95	7.4	33.06	14.93	29.74	19.01	30.07	29.98
Merged-chr2-180115864-3	chr2	180115366	180116366	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3500.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	42.33	32.25	44.4	23.62	24.26	29.74	30.63	14.59	17.49
Merged-chr7-45830866-3	chr7	45830382	45831382	+	995.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153419)	promoter-TSS (NM_153419)	-93.0	NM_153419	101612.0	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	52.06	40.55	24.05	24.96	24.72	32.96	36.97	26.97	22.48
Merged-chr11-102431231-3	chr11	102430710	102431710	+	995.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 1 of 12)	intron (NM_008175, intron 1 of 12)	888.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	282.59	224.86	188.69	234.13	191.27	150.31	280.95	313.5	146.14
Merged-chr9-107280309-1	chr9	107279809	107280809	+	995.5714109999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	9087.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	2.86	0.0	3.7	4.05	1.87	2.41	73.93	49.96	16.24
Merged-chrUn_JH584304-21705-1	chrUn_JH584304	21205	22205	+	995.5714109999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37984.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	76.05	42.01	0.0
Merged-chr15-31564071-3	chr15	31563587	31564587	+	995.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4746.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	23.45	16.13	3.7	53.3	33.12	47.42	21.12	14.59	4.37
Merged-chr2-166469165-3	chr2	166468680	166469680	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	21729.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	62.93	37.78	21.27	87.71	39.65	31.35	29.57	15.48	11.87
Merged-chr10-68136675-3	chr10	68136166	68137166	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142060.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	106.4	126.25	100.82	179.47	173.07	114.94	174.27	195.44	99.3
Merged-chr4-128883573-3	chr4	128883075	128884075	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178110)	promoter-TSS (NM_178110)	-565.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	9.15	7.83	25.9	16.87	22.86	15.27	8.45	7.07	21.23
Merged-chr15-81481194-3	chr15	81480673	81481673	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14857.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	28.03	26.26	20.35	30.36	34.06	16.88	40.14	44.66	10.62
Merged-chr4-84884942-3	chr4	84884410	84885410	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175275, intron 1 of 25)	CpG	601.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	34.9	35.02	59.2	32.39	26.12	34.56	41.19	29.18	28.1
Merged-chr10-80199659-3	chr10	80199141	80200141	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	20159.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	9.15	6.91	0.0	6.75	3.73	3.22	4.22	0.88	1.25
Merged-chr7-19357345-3	chr7	19356850	19357850	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007948)	TTS (NM_007948)	2133.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	13.16	8.75	16.65	5.4	8.86	21.7	6.34	9.73	8.74
Merged-chrX-7657404-3	chrX	7656894	7657894	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290624)	promoter-TSS (NM_001290624)	15.0	NM_001290624	54630.0	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Pk3|Sfc16	prickle planar cell polarity protein 3	protein-coding	22.31	25.34	18.5	32.39	15.86	28.94	19.01	10.17	31.23
Merged-chr2-151741282-3	chr2	151740788	151741788	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305244)	promoter-TSS (NM_001305244)	22.0	NM_212446	228769.0	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	15.45	17.97	12.95	30.36	21.46	23.31	15.84	17.24	10.62
Merged-chr2-102900562-3	chr2	102900064	102901064	+	995.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1101.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	144.16	217.49	117.47	203.76	184.74	129.41	199.62	207.38	144.27
Merged-chr17-74017845-3	chr17	74017349	74018349	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	30067.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	56.63	56.22	25.9	74.89	118.96	69.13	89.78	68.09	40.59
Merged-chr8-83989436-3	chr8	83988947	83989947	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008854, intron 5 of 9)	intron (NM_008854, intron 5 of 9)	-8225.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	42.33	31.33	30.52	49.25	29.86	28.13	21.12	27.86	24.98
Merged-chr10-41665700-3	chr10	41665179	41666179	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 10 of 47)	L1MB2|LINE|L1	50784.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	17.16	9.22	0.0	13.49	10.26	12.06	16.9	15.03	15.61
Merged-chr9-58552268-3	chr9	58551757	58552757	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11317.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	17.16	11.06	1.85	29.69	18.66	16.08	19.01	8.84	12.49
Merged-chr6-48699127-3	chr6	48698650	48699650	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9094.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	13.16	11.98	7.4	4.72	3.73	3.22	5.28	4.42	8.74
Merged-chr11-67559769-2	chr11	67559255	67560255	+	995.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-26745.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	6.86	0.92	0.92	4.72	2.8	8.04	25.35	7.96	0.62
Merged-chr6-136939634-1	chr6	136939134	136940134	+	995.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301303)	promoter-TSS (NM_001301303)	-107.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	50.34	58.06	23.12	40.48	29.86	40.99	159.48	169.35	111.17
Merged-chr5-20951170-4	chr5	20950647	20951647	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	158.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	215.66	263.11	219.21	183.52	204.8	170.4	231.3	191.02	148.01
Merged-chr13-42254052-3	chr13	42253553	42254553	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47423.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	17.73	19.81	17.57	21.59	7.0	16.08	24.29	14.59	16.24
Merged-chr1-120969704-3	chr1	120969207	120970207	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117698.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.58	2.3	6.47	4.05	6.06	4.02	3.17	5.75	2.5
Merged-chr2-5702520-3	chr2	5702027	5703027	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	GA-rich|Low_complexity|Low_complexity	12235.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	29.17	26.73	19.42	30.36	31.26	19.29	33.8	25.65	14.99
Merged-chr11-106085010-2	chr11	106084511	106085511	+	995.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	CpG	109.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	311.2	243.75	283.04	256.39	207.6	220.24	197.51	202.07	179.86
Merged-chr2-166733091-3	chr2	166732607	166733607	+	995.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19275.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	24.6	14.28	1.85	18.22	7.93	6.43	16.9	11.05	9.99
Merged-chr5-123061475-3	chr5	123060929	123061929	+	995.4545289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-14413.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	12.01	7.83	14.8	8.1	2.8	10.45	2.11	4.86	3.12
Merged-chr1-144001462-3	chr1	144000880	144001880	+	995.4523929999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	2769.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	94.96	82.02	41.62	80.29	45.72	24.11	71.82	66.33	26.85
Merged-chr6-39206148-3	chr6	39205598	39206598	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033430, intron 1 of 19)	CpG	675.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	438.19	398.58	415.3	437.22	376.94	322.32	374.95	309.52	234.2
Merged-chr15-41685743-3	chr15	41685234	41686234	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-103261.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	7.44	8.75	5.55	6.75	9.8	8.04	6.34	3.1	2.5
Merged-chr8-11115387-3	chr8	11114883	11115883	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106953.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	21.17	14.28	0.0	14.17	8.86	6.43	8.45	0.0	5.0
Merged-chr5-18036083-3	chr5	18035590	18036590	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	73520.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	33.75	32.25	3.7	35.76	37.79	45.01	19.01	24.76	13.74
Merged-chr16-32164600-3	chr16	32164119	32165119	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	975.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	187.63	213.34	172.97	136.97	167.01	169.6	186.94	222.85	193.6
Merged-chr2-102976431-3	chr2	102975906	102976906	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-74741.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	48.62	64.51	37.92	120.77	74.17	66.71	201.73	171.56	102.42
Merged-chr5-3358935-3	chr5	3358447	3359447	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15054.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	76.66	120.26	47.17	105.93	63.91	65.11	83.44	100.37	76.82
Merged-chr17-49016380-3	chr17	49015883	49016883	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	83801.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	24.03	21.66	24.05	18.22	11.66	4.02	17.96	11.5	9.99
Merged-chr16-10441530-3	chr16	10441037	10442037	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	L1MB2|LINE|L1	5825.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	36.04	30.87	27.75	30.36	22.39	27.33	21.12	30.51	18.11
Merged-chr11-76399145-3	chr11	76398648	76399648	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008750)	promoter-TSS (NM_008750)	-7.0	NM_008750	18230.0	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	5.15	5.53	3.7	5.4	5.13	4.82	5.28	1.33	2.5
Merged-chr5-9111923-3	chr5	9111402	9112402	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	11165.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	7.44	4.15	3.7	2.02	2.33	1.61	8.45	0.88	0.0
Merged-chr2-75770897-3	chr2	75770397	75771397	+	995.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61280.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	52.06	32.72	19.42	35.76	29.39	27.33	35.91	44.66	26.85
Merged-chr10-128322477-3	chr10	128321978	128322978	+	995.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019953)	promoter-TSS (NM_019953)	19.0	NM_019953	56530.0	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	82.38	83.86	82.32	101.21	91.9	131.82	146.81	128.67	81.19
Merged-chr1-128245145-2	chr1	128244656	128245656	+	995.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356529, intron 1 of 12)	intron (NM_001356529, intron 1 of 12)	1019.0	NM_001356529	67812.0	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	114.98	79.25	38.85	103.23	70.91	60.28	104.56	95.51	34.35
Merged-chr14-25548030-3	chr14	25547557	25548557	+	995.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 3 of 23)	intron (NM_183208, intron 3 of 23)	13618.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	29.17	17.51	7.4	34.41	11.66	7.23	11.62	5.31	11.87
Merged-chr1-78666174-3	chr1	78665677	78666677	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001136226, exon 4 of 4)	exon (NM_001136226, exon 4 of 4)	7737.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	9.72	6.45	9.25	16.19	9.33	5.63	4.22	0.88	7.49
Merged-chr4-35097040-3	chr4	35096546	35097546	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55009.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	37.18	35.48	10.17	87.04	43.39	32.15	15.84	15.48	8.74
Merged-chr1-86344533-3	chr1	86344036	86345036	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010880)	TTS (NM_010880)	6749.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	32.04	23.96	14.8	21.59	17.26	22.51	24.29	19.9	17.49
Merged-chr11-86724168-3	chr11	86723675	86724675	+	995.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 8 of 31)	intron (NM_001003908, intron 8 of 31)	33392.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	33.18	28.57	23.12	44.53	43.39	51.44	32.74	53.5	25.61
Merged-chr15-77798147-3	chr15	77797634	77798634	+	995.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41124.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	12.59	17.97	11.1	17.54	23.79	17.68	19.01	23.43	13.12
Merged-chr7-35086767-3	chr7	35086252	35087252	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30186.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	48.62	49.76	13.87	58.03	38.72	14.47	17.96	17.69	10.62
Merged-chr2-45108863-3	chr2	45108359	45109359	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	1418.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	109.83	110.59	137.82	155.86	107.3	188.89	214.41	149.01	144.27
Merged-chr10-118179011-1	chr10	118178511	118179511	+	995.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25953.0	NM_016971	50929.0	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	1.72	2.76	0.0	5.4	3.27	1.61	0.0	1.33	1.25
Merged-chr16-57570732-3	chr16	57570239	57571239	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	21497.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	140.15	141.46	61.97	114.7	79.31	65.91	90.83	119.39	81.19
Merged-chr12-79885492-3	chr12	79884994	79885994	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	39239.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	10.87	5.99	5.55	9.45	6.53	4.82	3.17	7.52	2.5
Merged-chr5-151210265-1	chr5	151209765	151210765	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20072.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	97.82	140.54	85.1	106.61	120.83	86.81	194.34	240.54	104.3
Merged-chr8-13646898-3	chr8	13646381	13647381	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	30706.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	35.47	58.98	38.85	49.25	42.92	40.99	59.15	41.56	15.61
Merged-chr16-15862912-1	chr16	15862412	15863412	+	995.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029354, exon 1 of 3)	exon (NM_029354, exon 1 of 3)	457.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	86.95	76.49	69.37	88.39	92.84	79.58	87.66	98.6	66.2
Merged-chr6-135008412-3	chr6	135007912	135008912	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3200.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	42.9	37.78	39.77	70.85	74.64	39.39	50.7	49.08	23.73
Merged-chr2-167735083-3	chr2	167734577	167735577	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43900.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	14.87	11.06	9.25	19.57	9.8	0.0	11.62	6.63	5.0
Merged-chr10-22308349-3	chr10	22307852	22308852	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1632.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	78.37	55.29	40.7	50.6	37.32	57.07	8.45	15.48	9.37
Merged-chr12-85477929-3	chr12	85477446	85478446	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010234)	TTS (NM_010234)	4056.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	24.03	10.6	1.85	25.64	4.2	9.65	7.39	3.98	3.75
Merged-chr14-63050971-3	chr14	63050473	63051473	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3982.0	NM_001034910	619548.0	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	3.43	4.61	0.0	2.7	1.87	8.04	1.06	1.77	0.0
Merged-chr5-99487136-3	chr5	99486655	99487655	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	LTR33A|LTR|ERVL	-234228.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	21.17	22.12	21.27	29.69	17.26	21.7	17.96	19.01	12.49
Merged-chr13-43785946-1	chr13	43785446	43786446	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	834.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	328.36	323.01	270.09	389.31	388.14	279.72	229.19	380.71	196.73
Merged-chr3-86224216-3	chr3	86223694	86224694	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	-496.0	NM_030695	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	18.88	8.75	0.0	24.29	16.33	12.06	6.34	5.31	5.62
Merged-chr5-115059128-3	chr5	115058631	115059631	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	intron (NM_029012, intron 1 of 10)	47607.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	40.04	27.65	23.12	35.76	31.72	17.68	22.18	28.3	13.74
Merged-chr11-69692370-3	chr11	69691872	69692872	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	L2|LINE|L2	3726.0	NM_011614	21944.0	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	50.34	46.08	36.07	60.05	41.99	71.54	55.98	39.35	26.23
Merged-chr4-126489925-3	chr4	126489407	126490407	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153177, exon 18 of 18)	3' UTR (NM_153177, exon 18 of 18)	-21324.0	NM_153403	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	17.16	6.45	11.1	14.17	5.13	4.82	9.51	4.86	11.24
Merged-chr5-103389603-3	chr5	103389096	103390096	+	995.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35596.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	4.58	11.98	3.7	5.4	5.13	17.68	7.39	5.75	6.25
Merged-chr3-31145940-4	chr3	31145432	31146432	+	995.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	11.44	8.29	7.4	20.24	10.73	4.82	27.46	11.05	1.25
Merged-chr1-180849730-3	chr1	180849235	180850235	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1416.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	457.64	495.34	216.44	528.98	453.91	308.65	419.31	551.38	205.47
Merged-chrX-48274834-3	chrX	48274343	48275343	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028276, exon 11 of 15)	exon (NM_028276, exon 11 of 15)	10583.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	31.46	33.64	42.55	28.34	25.66	28.94	45.42	38.03	31.23
Merged-chr11-83655871-3	chr11	83655385	83656385	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6507.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	21.74	16.59	27.75	27.66	9.8	18.49	16.9	8.84	13.74
Merged-chr7-44745320-3	chr7	44744819	44745819	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289839, intron 1 of 4)	intron (NM_001289839, intron 1 of 4)	3030.0	NM_001289836	243963.0	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	9.15	12.9	8.32	14.17	13.06	16.88	7.39	3.1	7.49
Merged-chrX-41909854-3	chrX	41909364	41910364	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033422, intron 1 of 38)	intron (NM_001033422, intron 1 of 38)	2037.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	18.31	32.72	14.8	15.52	23.33	17.68	29.57	33.6	28.73
Merged-chr6-135192076-3	chr6	135191562	135192562	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040296, exon 4 of 5)	non-coding (NR_040296, exon 4 of 5)	3582.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	26.31	13.36	13.87	24.29	19.13	24.11	15.84	7.07	10.62
Merged-chr16-57606796-3	chr16	57606291	57607291	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	76.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	70.93	103.68	49.02	76.92	83.51	73.95	94.0	110.98	48.71
Merged-chr2-153357003-3	chr2	153356503	153357503	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	10864.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	33.75	37.32	49.02	36.43	36.39	49.03	63.37	29.18	34.35
Merged-chr5-124001077-3	chr5	124000588	124001588	+	995.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145070, exon 27 of 32)	exon (NM_145070, exon 27 of 32)	4236.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	25.74	9.68	11.1	31.71	15.39	12.86	17.96	11.94	7.49
Merged-chr7-45924175-3	chr7	45923709	45924709	+	995.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2783.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	73.22	76.03	74.0	58.7	47.58	70.73	63.37	52.62	52.46
Merged-chr11-54879590-3	chr11	54879081	54880081	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13198.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	25.74	22.12	34.22	26.99	14.46	12.86	49.64	44.22	24.36
Merged-chr13-91636197-3	chr13	91635709	91636709	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	T-rich|Low_complexity|Low_complexity	-105312.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	58.35	49.3	30.52	58.7	69.04	45.01	31.69	28.3	14.99
Merged-chr2-6450890-3	chr2	6450413	6451413	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98177.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	36.61	14.75	9.25	40.48	22.39	23.31	38.02	28.3	18.74
Merged-chr10-34128044-3	chr10	34127535	34128535	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175449)	promoter-TSS (NM_175449)	-63.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	342.09	378.76	257.14	381.22	363.88	337.59	278.83	417.85	199.85
Merged-chr17-35188432-3	chr17	35187905	35188905	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	35.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	82.38	104.14	90.65	121.45	76.04	101.28	129.91	126.9	86.18
Merged-chr12-70136582-3	chr12	70136092	70137092	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17579.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	63.5	74.65	19.42	66.12	78.84	54.66	47.53	27.86	18.74
Merged-chr9-110857020-3	chr9	110856512	110857512	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146227)	promoter-TSS (NM_146227)	-955.0	NM_146227	235631.0	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	24.03	14.75	7.4	24.29	20.53	11.25	17.96	16.36	11.24
Merged-chr12-100779610-3	chr12	100779109	100780109	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 1 of 12)	intron (NM_145448, intron 1 of 12)	552.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	114.98	105.52	72.15	130.22	125.96	131.02	125.69	113.64	90.56
Merged-chr1-91053889-3	chr1	91053405	91054405	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	461.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	157.31	183.85	185.92	126.17	106.36	157.54	176.38	190.57	119.28
Merged-chr14-63436497-3	chr14	63436002	63437002	+	995.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177628, exon 1 of 4)	5' UTR (NM_177628, exon 1 of 4)	108.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	126.42	109.21	67.52	109.98	90.04	120.57	116.18	93.3	68.07
Merged-chr1-191718111-5	chr1	191717624	191718624	+	995.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172266)	promoter-TSS (NM_172266)	100.0	NM_172266	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	85.24	40.55	63.82	64.1	26.59	56.27	48.58	26.09	19.98
Merged-chr8-122548012-3	chr8	122547579	122548579	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	3250.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	28.6	12.44	26.82	21.59	9.33	12.06	19.01	14.59	22.48
Merged-chr4-145214616-3	chr4	145214115	145215115	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-19610.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	28.6	22.58	20.35	26.31	19.13	39.39	22.18	29.18	17.49
Merged-chr1-6406585-3	chr1	6406082	6407082	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47251.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	14.87	18.89	12.95	8.77	8.4	6.43	12.67	17.24	9.99
Merged-chr5-43854312-3	chr5	43853801	43854801	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14508.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	71.51	97.23	45.32	134.94	148.82	141.47	89.78	84.01	59.95
Merged-chr12-32230786-3	chr12	32230288	32231288	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22139.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	16.59	14.75	1.85	31.04	21.46	17.68	16.9	10.17	13.74
Merged-chr15-74968380-3	chr15	74967876	74968876	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13270.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	141.87	156.21	139.67	126.85	106.36	127.0	141.53	140.61	88.06
Merged-chr13-9765042-3	chr13	9764510	9765510	+	995.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347472)	promoter-TSS (NM_001347472)	-54.0	NM_001347473	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	222.53	215.65	196.09	244.92	190.8	189.69	254.54	152.55	139.27
Merged-chr2-156356244-2	chr2	156355752	156356752	+	995.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 9 of 12)	intron (NM_027585, intron 9 of 12)	36727.0	NR_024329	347740.0	Mm.324242	NR_024329	ENSMUSG00000102869	2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	97.25	123.49	70.3	3.37	0.47	0.8	123.57	146.36	67.45
Merged-chr8-124830205-2	chr8	124829704	124830704	+	995.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198632, exon 10 of 10)	3' UTR (NM_198632, exon 10 of 10)	32825.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	13.73	11.52	12.95	22.94	20.53	20.9	3.17	0.88	1.25
Merged-chr2-102154968-2	chr2	102154476	102155476	+	995.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	Charlie19a|DNA|hAT-Charlie	31484.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.29	4.61	5.55	14.84	10.26	20.9	2.11	6.63	14.99
Merged-chr7-80075070-3	chr7	80074704	80075704	+	995.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045695)	promoter-TSS (NR_045695)	53.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	78.37	89.39	49.02	86.36	56.91	74.75	63.37	53.06	47.46
Merged-chr17-10370709-5	chr17	10370192	10371192	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46090.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	81.8	62.67	61.97	98.51	71.84	83.59	57.03	66.77	44.97
Merged-chr11-3182604-2	chr11	3182128	3183128	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	MTD|LTR|ERVL-MaLR	10835.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	39.47	69.12	80.47	56.0	65.78	112.53	5.28	3.54	107.42
Merged-chr5-136217316-4	chr5	136216818	136217818	+	995.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302938)	TTS (NM_001302938)	-18364.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	44.62	24.42	9.25	53.3	44.78	40.99	49.64	24.76	17.49
Merged-chr10-122794562-3	chr10	122794033	122795033	+	995.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115218.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	31.46	17.97	18.5	35.09	27.52	27.33	38.02	32.28	25.61
Merged-chr7-67370429-3	chr7	67369929	67370929	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	2429.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	43.48	66.35	15.72	45.88	43.39	36.97	58.09	46.87	25.61
Merged-chr14-79515661-3	chr14	79515163	79516163	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286412)	promoter-TSS (NM_001286412)	-11.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	315.77	341.9	148.92	321.17	306.96	167.99	286.23	343.56	126.15
Merged-chr17-50111252-3	chr17	50110742	50111742	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79255.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	16.59	11.98	3.7	10.12	13.53	20.9	6.34	7.52	10.62
Merged-chr4-134005780-3	chr4	134005287	134006287	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4923.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	24.6	17.05	12.95	15.52	7.93	11.25	24.29	12.38	18.11
Merged-chr14-75147887-3	chr14	75147384	75148384	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	L1_Mus3|LINE|L1	11459.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	56.63	33.18	37.92	53.3	43.39	27.33	50.7	46.87	25.61
Merged-chr11-22814554-3	chr11	22814040	22815040	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45195.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	101.83	107.82	79.55	101.88	72.31	47.42	134.14	109.66	60.58
Merged-chr1-171713582-3	chr1	171713039	171714039	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31547.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	59.49	61.75	40.7	112.68	117.09	69.13	48.58	60.58	56.83
Merged-chr7-75686742-3	chr7	75686250	75687250	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-161588.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	101.25	149.75	74.0	95.81	85.84	72.34	77.1	86.66	61.83
Merged-chr18-11822510-3	chr18	11822000	11823000	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 3 of 3)	intron (NR_045421, intron 3 of 3)	-16774.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	21.17	17.97	8.32	23.62	15.39	19.29	27.46	25.65	25.61
Merged-chr13-26234920-3	chr13	26234416	26235416	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77490.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	8.01	9.68	0.0	10.8	8.86	6.43	7.39	9.73	6.25
Merged-chr2-31763448-3	chr2	31762954	31763954	+	995.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	3281.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	82.38	95.38	98.97	99.18	66.24	98.06	99.28	102.58	58.08
Merged-chr16-43108013-2	chr16	43107516	43108516	+	995.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-139268.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	24.03	18.89	37.0	24.96	19.13	28.94	9.51	8.84	11.24
Merged-chr2-167923746-2	chr2	167923264	167924264	+	995.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8563.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	34.32	25.34	29.6	31.04	26.12	29.74	47.53	54.83	47.46
Merged-chr2-128429934-3	chr2	128429438	128430438	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028589)	promoter-TSS (NR_028589)	-587.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	249.99	259.88	123.02	190.95	143.22	131.02	195.39	291.83	139.89
Merged-chr6-134120427-3	chr6	134119920	134120920	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	84720.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	112.69	56.22	48.1	86.36	52.72	49.03	109.84	102.14	53.08
Merged-chr14-70880251-3	chr14	70879730	70880730	+	995.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9877.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	65.79	49.3	49.02	42.51	29.86	40.99	26.4	21.22	11.24
Merged-chr2-126164799-3	chr2	126164290	126165290	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026981, exon 5 of 5)	exon (NM_026981, exon 5 of 5)	12649.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	12.01	13.36	7.4	7.42	5.6	9.65	8.45	12.38	9.99
Merged-chr16-17815551-3	chr16	17815046	17816046	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17573.0	NR_027959	433004.0	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	5.15	0.92	3.7	8.77	0.93	3.22	6.34	3.98	1.25
Merged-chr7-29171208-3	chr7	29170722	29171722	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	1012.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	21.17	10.6	11.1	22.27	9.8	14.47	73.93	39.35	28.1
Merged-chr13-62129945-3	chr13	62129476	62130476	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039239)	promoter-TSS (NM_001039239)	86.0	NM_001039239	630579.0	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 808	protein-coding	4.58	10.6	9.25	6.07	9.8	18.49	16.9	12.82	11.87
Merged-chr2-29661926-3	chr2	29661430	29662430	+	995.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	42210.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	42.33	25.8	41.62	53.98	32.66	35.37	41.19	39.35	36.22
Merged-chr5-124478978-3	chr5	124478450	124479450	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030259)	promoter-TSS (NM_030259)	-715.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	348.38	302.27	221.06	294.18	191.73	201.75	260.88	319.24	202.35
Merged-chr6-8505071-3	chr6	8504561	8505561	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	4100.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	15.45	8.75	15.72	10.8	7.46	4.82	19.01	11.05	12.49
Merged-chr6-127151826-3	chr6	127151338	127152338	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-790.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	25.17	25.8	14.8	11.47	2.8	6.43	5.28	0.44	7.49
Merged-chr6-87207852-3	chr6	87207356	87208356	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	103110.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	17.16	12.9	15.72	12.14	11.2	14.47	34.85	26.09	6.25
Merged-chr14-78701243-1	chr14	78700743	78701743	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	31486.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	9.15	9.22	7.4	6.75	14.93	12.86	1.06	3.54	1.87
Merged-chr9-14244627-3	chr9	14244125	14245125	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31676.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	18.88	15.21	10.17	26.99	19.13	16.08	19.01	11.5	12.49
Merged-chr16-22657066-3	chr16	22656562	22657562	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_138650, exon 1 of 25)	5' UTR (NM_138650, exon 1 of 25)	169.0	NM_138650	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	16.59	11.52	4.62	18.22	14.93	12.86	25.35	22.99	8.12
Merged-chr9-72532196-6	chr9	72531764	72532764	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045735)	promoter-TSS (NR_045735)	24.0	NM_001033536	319758.0	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	145.3	134.09	135.04	200.39	127.82	122.18	197.51	148.57	84.31
Merged-chr16-24348160-3	chr16	24347636	24348636	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45214.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	37.76	40.09	29.6	62.07	31.72	41.8	35.91	53.06	22.48
Merged-chr2-168578235-2	chr2	168577747	168578747	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	12118.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	17.16	20.74	33.3	20.92	13.06	22.51	5.28	1.33	7.49
Merged-chr9-57523886-3	chr9	57523359	57524359	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	2627.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	51.48	74.65	54.57	36.43	31.26	54.66	88.72	89.76	56.21
Merged-chr13-92923760-3	chr13	92923273	92924273	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78986.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	25.17	14.75	18.5	2.02	2.33	8.84	47.53	29.63	19.98
Merged-chr9-123986323-3	chr9	123985819	123986819	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7911.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	26.31	38.71	45.32	36.43	27.06	31.35	32.74	19.9	24.36
Merged-chr14-70860762-3	chr14	70860263	70861263	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7830.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	49.2	32.25	41.62	58.7	27.06	49.03	36.97	27.41	33.1
Merged-chr14-25850634-1	chr14	25850134	25851134	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	8479.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	6.29	5.07	7.4	13.49	8.86	4.02	9.51	7.96	7.49
Merged-chr7-114874281-1	chr7	114873781	114874781	+	995.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74369.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.57	2.3	1.85	2.7	1.4	0.0	7.39	0.0	4.37
Merged-chr8-108827630-3	chr8	108827150	108828150	+	995.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-109210.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	62.93	53.45	44.4	74.89	77.44	73.14	13.73	13.27	14.36
Merged-chr1-120253966-3	chr1	120253472	120254472	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	11308.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	14.87	14.28	24.05	27.66	13.53	27.33	20.07	18.57	34.97
Merged-chr10-22142709-3	chr10	22142188	22143188	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254744, intron 1 of 1)	B1_Mus1|SINE|Alu	6582.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	41.19	46.08	22.2	56.68	97.03	27.33	34.85	36.7	21.86
Merged-chr9-77911678-3	chr9	77911183	77912183	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5682.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	383.28	418.85	258.06	379.87	383.47	240.33	391.84	584.1	199.22
Merged-chr17-55722473-3	chr17	55721988	55722988	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-9852.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	88.1	125.79	71.22	90.41	69.98	112.53	90.83	82.24	68.7
Merged-chr2-11766704-3	chr2	11766201	11767201	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348235, intron 3 of 20)	intron (NM_001348235, intron 3 of 20)	10884.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	26.31	29.95	22.2	32.39	18.19	36.17	14.79	21.67	23.11
Merged-chr16-65406112-3	chr16	65405692	65406692	+	994.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114437.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	27.46	30.87	18.5	39.81	22.86	33.76	26.4	12.38	9.99
Merged-chr7-141477277-3	chr7	141476774	141477774	+	994.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	MIRc|SINE|MIR	894.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	65.79	54.37	58.27	92.44	43.85	124.59	92.94	80.92	62.45
Merged-chr12-112760537-6	chr12	112760043	112761043	+	994.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178911)	promoter-TSS (NM_178911)	-112.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	102.4	96.76	103.59	53.98	58.31	75.56	105.62	76.49	53.08
Merged-chr17-71004453-2	chr17	71003939	71004939	+	994.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1906.0	NM_026064	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	8.01	5.07	3.7	10.12	6.53	7.23	21.12	26.09	17.49
Merged-chr5-101959652-3	chr5	101959164	101960164	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 6 of 66)	intron (NM_172882, intron 6 of 66)	110257.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	44.62	41.01	28.67	33.06	27.06	29.74	68.65	50.85	39.97
Merged-chr9-35062283-3	chr9	35061780	35062780	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	RMER6B|LTR|ERVK	-54448.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	48.05	47.46	29.6	42.51	27.52	36.17	26.4	31.39	52.46
Merged-chr1-106817759-3	chr1	106817240	106818240	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21015.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	74.94	61.28	48.1	63.42	47.58	30.54	52.81	48.64	36.22
Merged-chr3-135825605-3	chr3	135825116	135826116	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135150)	promoter-TSS (NM_001135150)	-41.0	NM_001135149	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	44.05	56.22	42.55	59.38	79.77	93.24	73.93	64.56	34.35
Merged-chr9-102834892-3	chr9	102834405	102835405	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013649)	promoter-TSS (NM_013649)	-15.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	12.59	5.99	11.1	15.52	13.06	20.9	13.73	2.65	8.74
Merged-chr1-161875899-3	chr1	161875398	161876398	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151684, intron 1 of 24)	intron (NR_151684, intron 1 of 24)	784.0	NM_172645	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	135.58	123.95	87.87	142.37	184.27	115.75	165.82	199.86	66.82
Merged-chr15-73442589-3	chr15	73442094	73443094	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19403.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	6.29	1.84	5.55	3.37	3.73	1.61	4.22	7.96	3.75
Merged-chr10-21809719-3	chr10	21809161	21810161	+	994.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72523.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.43	7.83	11.1	13.49	4.2	3.22	21.12	16.8	14.99
Merged-chr11-48838609-3	chr11	48838048	48839048	+	994.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347446, intron 1 of 6)	intron (NM_001347446, intron 1 of 6)	1077.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	17.16	13.36	5.55	9.45	4.2	4.02	5.28	9.29	9.99
Merged-chr17-6142228-2	chr17	6141740	6142740	+	994.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	4092.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	4.58	2.3	1.85	5.4	4.67	4.82	5.28	1.77	2.5
Merged-chr11-97988180-3	chr11	97987681	97988681	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	288.89	236.84	153.54	357.6	315.36	233.1	314.74	408.12	153.63
Merged-chr6-57823225-3	chr6	57822738	57823738	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1887.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	77.8	66.81	46.25	47.9	23.79	73.14	64.43	38.91	45.59
Merged-chr17-45595500-3	chr17	45594964	45595964	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357771, intron 1 of 13)	CpG	108.0	NM_001199116	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	49.2	45.16	50.87	61.4	62.05	77.97	53.87	45.54	46.84
Merged-chr1-171410390-3	chr1	171409898	171410898	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305677)	promoter-TSS (NM_001305677)	-915.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	86.95	106.44	40.7	98.51	70.44	50.64	65.48	92.41	63.08
Merged-chr18-32348533-3	chr18	32348057	32349057	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-28660.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	39.47	31.33	37.0	42.51	26.59	21.7	30.63	20.34	29.35
Merged-chr19-47882699-3	chr19	47882196	47883196	+	994.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030051, intron 7 of 8)	intron (NM_030051, intron 7 of 8)	16902.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	4.0	2.3	0.92	3.37	0.93	1.61	4.22	1.77	0.62
Merged-chr9-123853055-3	chr9	123852543	123853543	+	994.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1144.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	312.91	371.39	208.11	293.5	264.04	199.34	358.05	484.62	226.7
Merged-chr14-25378303-5	chr14	25377834	25378834	+	994.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-80851.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	193.93	185.7	134.12	180.15	236.05	172.81	156.32	119.39	68.7
Merged-chr17-42912363-3	chr17	42911860	42912860	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35936.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	92.67	133.17	87.87	112.68	103.56	118.96	176.38	183.5	110.54
Merged-chr18-68058531-3	chr18	68058036	68059036	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	125363.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	25.74	27.65	15.72	41.83	37.32	12.06	8.45	2.65	12.49
Merged-chr1-51477845-3	chr1	51477334	51478334	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028696, exon 1 of 6)	exon (NM_028696, exon 1 of 6)	565.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	173.9	184.77	111.92	170.03	195.0	106.9	231.3	227.72	119.28
Merged-chr6-129623922-3	chr6	129623429	129624429	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286018)	promoter-TSS (NM_001286018)	-65.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	100.68	133.17	59.2	74.22	78.37	60.28	109.84	93.74	64.95
Merged-chr16-49904538-3	chr16	49904048	49905048	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	Lx8|LINE|L1	48894.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	76.08	103.68	65.67	96.48	97.03	110.12	127.8	155.64	56.83
Merged-chr2-91196115-3	chr2	91195640	91196640	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_001177730	22259.0	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	231.68	193.99	152.62	257.74	204.33	235.51	248.2	297.58	157.38
Merged-chr3-31109303-3	chr3	31108794	31109794	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	14236.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	21.74	35.02	5.55	18.89	25.66	8.84	17.96	24.76	13.12
Merged-chr12-80334346-3	chr12	80333864	80334864	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57313.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	65.79	62.21	54.57	56.68	42.92	61.89	43.3	54.83	29.98
Merged-chr17-83351812-3	chr17	83351303	83352303	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	872.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	70.93	56.22	67.52	87.71	45.25	64.3	72.88	61.46	43.72
Merged-chr5-113594608-3	chr5	113594097	113595097	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44177.0	NM_177292	320916.0	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	7.44	4.15	5.55	6.07	2.8	4.82	6.34	1.33	11.87
Merged-chr9-96637363-3	chr9	96636875	96637875	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5872.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	18.88	17.97	3.7	15.52	13.06	24.11	17.96	15.48	16.86
Merged-chr4-131838323-3	chr4	131837820	131838820	+	994.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011214)	promoter-TSS (NM_011214)	-42.0	NM_001083119	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	21.17	14.28	9.25	6.07	7.46	6.43	5.28	2.21	6.25
Merged-chr2-59161649-4	chr2	59161123	59162123	+	994.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001178)	promoter-TSS (NM_001001178)	773.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	211.66	202.75	204.41	214.56	228.59	206.57	207.01	244.96	144.89
Merged-chr7-111373594-3	chr7	111373098	111374098	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250923.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	14.87	13.82	5.55	4.72	4.67	3.22	25.35	30.07	18.11
Merged-chr4-123990840-3	chr4	123990319	123991319	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	73386.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	20.02	11.06	4.62	94.46	107.76	49.03	23.24	17.24	2.5
Merged-chr7-127025343-3	chr7	127024852	127025852	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010772, exon 2 of 5)	exon (NM_010772, exon 2 of 5)	1127.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	118.42	117.5	73.07	170.7	195.47	145.49	116.18	141.05	71.2
Merged-chr19-6402205-3	chr19	6401724	6402724	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 2 of 16)	intron (NM_011242, intron 2 of 16)	1641.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	38.33	43.31	87.87	31.71	46.65	65.91	59.15	71.19	47.46
Merged-chr3-89835659-3	chr3	89835166	89836166	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172530, intron 2 of 5)	intron (NM_172530, intron 2 of 5)	4296.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	22.88	29.49	23.12	29.69	20.53	29.74	39.08	27.86	26.85
Merged-chr1-52799611-3	chr1	52799195	52800195	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	17993.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	78.37	66.81	49.02	33.74	38.25	29.74	103.51	68.09	53.71
Merged-chr3-132171763-3	chr3	132171257	132172257	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	MER121|DNA|TcMar?	86465.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	11.44	10.14	5.55	13.49	20.06	28.94	9.51	4.86	13.12
Merged-chr12-108635709-3	chr12	108635204	108636204	+	994.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163396)	promoter-TSS (NM_001163396)	-49.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	117.84	151.14	97.12	143.04	137.15	143.07	144.7	175.1	132.4
Merged-chr13-58487460-3	chr13	58486961	58487961	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84118.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	57.21	68.2	48.1	83.66	57.85	79.58	83.44	86.66	56.83
Merged-chr8-56286875-1	chr8	56286375	56287375	+	994.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7677.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	7.44	11.98	16.65	26.99	21.93	23.31	8.45	11.94	20.61
Merged-chr2-46251748-3	chr2	46251252	46252252	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur1|LINE|L1	555147.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	11.44	11.06	8.32	6.07	10.26	6.43	9.51	13.27	7.49
Merged-chr2-79742158-3	chr2	79741657	79742657	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	34377.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	5.15	2.76	1.85	6.07	6.53	8.04	9.51	1.33	7.49
Merged-chr3-127398501-1	chr3	127398001	127399001	+	994.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327939, intron 1 of 45)	intron (NM_001327939, intron 1 of 45)	10557.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.14	2.76	0.92	4.05	3.73	1.61	16.9	11.05	11.87
Merged-chr9-48407725-1	chr9	48407225	48408225	+	994.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	45684.0	NM_172921	244853.0	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	1.72	1.38	1.85	1.35	2.33	0.0	15.84	15.03	2.5
Merged-chr5-118560201-3	chr5	118559697	118560697	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172424)	promoter-TSS (NM_172424)	-522.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	73.22	39.17	83.25	89.06	32.19	45.82	73.93	21.22	31.23
Merged-chr15-50826333-3	chr15	50825839	50826839	+	994.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	intron (NM_001310481, intron 3 of 5)	62710.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	42.9	42.85	19.42	54.65	40.59	30.54	35.91	46.43	33.1
Merged-chr4-56114083-2	chr4	56113581	56114581	+	994.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-581606.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	14.3	19.35	14.8	11.47	17.26	22.51	21.12	10.61	29.35
Merged-chrX-11999219-3	chrX	11998701	11999701	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	81352.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	5.15	3.23	3.7	5.4	1.4	1.61	3.17	0.44	4.37
Merged-chr6-13872337-3	chr6	13871825	13872825	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001352887)	promoter-TSS (NM_001352887)	756.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	84.09	149.29	60.12	78.27	67.18	86.81	88.72	137.07	65.58
Merged-chr19-29521211-3	chr19	29520703	29521703	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 1 of 3)	intron (NR_015567, intron 1 of 3)	784.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	112.69	124.87	78.62	120.77	98.9	109.32	127.8	103.91	51.84
Merged-chr13-45390751-3	chr13	45390191	45391191	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 1 of 6)	intron (NM_153789, intron 1 of 6)	949.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	231.68	223.48	144.29	255.72	207.6	200.95	252.43	255.13	118.66
Merged-chr11-102881051-3	chr11	102880579	102881579	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011431)	promoter-TSS (NM_011431)	-104.0	NM_001109995	20624.0	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	241.98	196.29	120.24	218.61	134.35	118.16	154.2	149.45	60.58
Merged-chr18-3891062-3	chr18	3890552	3891552	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-274780.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.86	13.82	13.87	7.42	9.33	17.68	11.62	13.27	16.86
Merged-chr1-131017337-3	chr1	131016858	131017858	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2487.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	20.59	19.81	28.67	13.49	9.33	6.43	25.35	16.8	19.98
Merged-chr8-70695417-3	chr8	70694923	70695923	+	994.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2316.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	105.26	83.4	60.12	95.81	85.37	77.16	99.28	95.07	63.7
Merged-chr17-87972211-3	chr17	87971698	87972698	+	994.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2852.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	52.06	43.31	61.05	50.6	40.12	65.11	31.69	27.41	29.35
Merged-chr11-116842900-3	chr11	116842307	116843307	+	994.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028865)	promoter-TSS (NM_028865)	642.0	NM_033398	107817.0	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	225.96	182.01	209.96	192.97	179.61	191.3	165.82	180.85	138.65
Merged-chr14-77825293-2	chr14	77824807	77825807	+	994.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025384)	TTS (NM_025384)	-26339.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	9.15	1.84	1.85	7.42	12.13	3.22	7.39	6.19	7.49
Merged-chr14-76505973-2	chr14	76505483	76506483	+	994.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1473.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	33.18	32.72	9.25	39.81	41.99	29.74	6.34	4.86	5.0
Merged-chr3-107134650-2	chr3	107134160	107135160	+	994.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	33093.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	10.87	5.53	15.72	31.71	21.46	27.33	90.83	78.71	23.73
Merged-chr11-53931232-3	chr11	53930723	53931723	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39520.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	46.91	41.47	27.75	39.81	18.66	34.56	22.18	32.28	15.61
Merged-chr1-40404802-3	chr1	40404271	40405271	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24799.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	16.02	10.6	1.85	24.96	28.46	41.8	15.84	13.71	4.37
Merged-chr14-64652481-3	chr14	64652018	64653018	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081177)	promoter-TSS (NM_001081177)	-13.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	60.64	65.43	65.67	64.77	63.91	67.52	67.6	71.19	48.71
Merged-chr8-121792366-3	chr8	121791864	121792864	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37205.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	13.73	10.6	30.52	14.84	16.33	32.15	97.17	80.47	85.56
Merged-chr16-35802336-3	chr16	35801825	35802825	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 3 of 8)	intron (NR_152314, intron 3 of 8)	31939.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	17.73	16.13	8.32	16.19	11.66	15.27	34.85	20.34	13.74
Merged-chr6-108400004-3	chr6	108399523	108400523	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 31 of 61)	intron (NM_010585, intron 31 of 61)	-89720.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	25.74	43.77	30.52	38.46	29.86	49.03	20.07	26.53	8.12
Merged-chr6-146686118-3	chr6	146685613	146686613	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28895.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	7.44	6.45	1.85	16.19	10.73	0.8	6.34	9.73	6.87
Merged-chr16-22009793-3	chr16	22009282	22010282	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357424, intron 1 of 15)	CpG	298.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	481.1	378.76	218.29	427.1	350.81	172.81	314.74	340.91	176.12
Merged-chr9-94669868-3	chr9	94669379	94670379	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177909)	promoter-TSS (NM_177909)	-13.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	67.5	80.18	77.7	87.04	77.44	77.16	69.71	59.69	39.35
Merged-chr15-76745259-3	chr15	76744766	76745766	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 3 of 10)	intron (NM_198420, intron 3 of 10)	-21421.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	44.05	21.66	37.0	50.6	39.65	22.51	46.47	29.63	20.61
Merged-chr7-141409064-3	chr7	141408555	141409555	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172116, intron 7 of 7)	intron (NM_172116, intron 7 of 7)	5070.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	6.86	5.07	3.7	14.84	7.93	3.22	5.28	5.31	14.99
Merged-chr1-165738072-3	chr1	165737581	165738581	+	994.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25677.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	93.24	87.55	56.42	109.3	75.57	68.32	102.45	96.83	66.2
Merged-chr4-101693010-3	chr4	101692511	101693511	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24396.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	11.44	22.58	14.8	44.53	31.26	49.83	28.52	18.57	23.73
Merged-chr4-35224235-3	chr4	35223748	35224748	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	MER44B|DNA|TcMar-Tigger	1632.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	314.06	326.24	177.59	244.25	213.19	172.81	280.95	316.15	146.76
Merged-chr1-137751754-3	chr1	137751197	137752197	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214758.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	18.31	17.97	9.25	51.95	30.32	36.97	25.35	25.2	18.74
Merged-chr10-67693770-3	chr10	67693275	67694275	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121816.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	71.51	59.9	61.97	88.39	56.45	69.13	49.64	55.27	54.96
Merged-chr17-56762229-3	chr17	56761755	56762755	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2496.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	24.6	12.9	29.6	24.96	14.93	24.92	35.91	15.92	12.49
Merged-chr19-44067453-3	chr19	44066954	44067954	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145502, intron 2 of 10)	intron (NM_145502, intron 2 of 10)	2232.0	NM_145502	226144.0	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	23.45	22.58	18.5	16.19	16.79	16.08	16.9	17.69	13.74
Merged-chr11-78094667-3	chr11	78094161	78095161	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346762)	promoter-TSS (NM_001346762)	-6.0	NM_001346762	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	47.48	36.86	49.95	49.25	39.19	39.39	57.03	40.24	50.59
Merged-chr2-3752512-3	chr2	3752025	3753025	+	994.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	39067.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	26.89	15.21	11.1	15.52	16.33	8.04	11.62	15.48	18.74
Merged-chr14-70392783-5	chr14	70392252	70393252	+	994.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021308, intron 16 of 22)	intron (NM_021308, intron 16 of 22)	36342.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	88.67	81.1	49.95	96.48	68.11	69.13	59.15	59.69	54.33
Merged-chr16-24773933-3	chr16	24773428	24774428	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	AT_rich|Low_complexity|Low_complexity	52073.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	19.45	15.67	14.8	25.64	18.66	12.86	20.07	21.67	18.11
Merged-chr4-137724964-3	chr4	137724455	137725455	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081155, intron 19 of 24)	intron (NM_001081155, intron 19 of 24)	494.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	50.91	34.1	35.15	42.51	55.51	42.6	77.1	64.56	41.22
Merged-chr5-102046175-3	chr5	102045673	102046673	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	23748.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	74.94	44.7	48.1	108.63	54.11	67.52	88.72	63.67	52.46
Merged-chr7-141468724-3	chr7	141468228	141469228	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111050)	promoter-TSS (NM_001111050)	-61.0	NM_001111050	12476.0	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	57.78	29.49	52.72	67.47	34.52	59.48	38.02	51.29	23.11
Merged-chr15-63498686-3	chr15	63498168	63499168	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19060.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	22.31	25.34	40.7	30.36	30.32	46.62	24.29	33.16	22.48
Merged-chr2-72351534-3	chr2	72351045	72352045	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	65844.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	7.44	6.45	9.25	5.4	9.8	9.65	11.62	11.94	7.49
Merged-chr15-85657830-3	chr15	85657316	85658316	+	994.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45957.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	191.07	269.56	153.54	203.09	169.34	174.42	245.04	302.88	135.52
Merged-chr1-152682769-3	chr1	152682333	152683333	+	994.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-57616.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	50.34	34.1	24.97	64.1	54.58	32.15	50.7	34.49	19.98
Merged-chr8-41019640-5	chr8	41019187	41020187	+	994.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015457, intron 2 of 2)	intron (NR_015457, intron 2 of 2)	2219.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	58.92	77.87	47.17	50.6	48.52	49.03	143.64	132.65	74.94
Merged-chr15-77933950-3	chr15	77933444	77934444	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4950.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	15.45	7.37	11.1	8.77	4.67	8.04	4.22	4.42	5.0
Merged-chr17-87313519-3	chr17	87312999	87313999	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	30613.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	62.35	36.86	16.65	103.23	67.18	57.07	47.53	35.37	9.99
Merged-chr5-115236015-3	chr5	115235505	115236505	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026398, intron 1 of 5)	intron (NM_026398, intron 1 of 5)	154.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	13.16	11.06	1.85	32.39	27.99	31.35	17.96	11.5	14.36
Merged-chr4-132760494-3	chr4	132759997	132760997	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3326.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	30.89	21.66	46.25	20.24	16.79	33.76	24.29	17.24	14.99
Merged-chr11-117803468-3	chr11	117802978	117803978	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029964, intron 3 of 5)	intron (NM_029964, intron 3 of 5)	5818.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	26.31	19.35	18.5	20.92	10.73	24.92	28.52	18.13	24.98
Merged-chr2-4969293-3	chr2	4968776	4969776	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-6846.0	NM_001311208	68527.0	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	5.15	6.45	4.62	2.02	10.73	8.84	14.79	9.73	9.99
Merged-chr7-141525468-3	chr7	141524961	141525961	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026522, intron 7 of 10)	intron (NM_026522, intron 7 of 10)	14396.0	NM_026522	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	4.58	5.53	1.85	6.75	3.73	4.82	3.17	3.54	2.5
Merged-chr19-56397196-3	chr19	56396712	56397712	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	83.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	85.81	88.47	105.44	80.97	102.63	86.81	106.67	100.81	44.97
Merged-chr4-129497264-3	chr4	129496787	129497787	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6097.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	110.98	91.7	78.62	77.59	32.66	123.78	58.09	49.08	68.7
Merged-chr13-74639115-3	chr13	74638623	74639623	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030711)	promoter-TSS (NM_030711)	-730.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	32.61	38.25	29.6	21.59	30.32	28.13	38.02	42.89	31.85
Merged-chr3-38128673-3	chr3	38128158	38129158	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79461.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	54.35	41.93	23.12	38.46	36.39	36.97	44.36	38.47	33.72
Merged-chr6-146634411-3	chr6	146633929	146634929	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026281, exon 1 of 12)	exon (NM_026281, exon 1 of 12)	163.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	48.05	63.59	45.32	66.8	48.05	58.68	43.3	34.93	31.85
Merged-chr6-141066011-3	chr6	141065521	141066521	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-183248.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	24.03	14.75	19.42	16.87	13.53	16.08	16.9	8.4	9.37
Merged-chr1-138248264-3	chr1	138247780	138248780	+	994.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25458.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	16.59	11.06	7.4	14.17	2.8	11.25	11.62	7.52	6.87
Merged-chr13-95639805-2	chr13	95639306	95640306	+	994.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 30 of 35)	(TTTTG)n|Simple_repeat|Simple_repeat	-21340.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	31.46	38.25	15.72	10.12	2.33	11.25	19.01	28.3	11.87
Merged-chr17-67339825-3	chr17	67339315	67340315	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	14644.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	69.79	65.89	35.15	62.75	54.11	40.99	70.76	86.66	39.97
Merged-chr17-35208431-3	chr17	35207918	35208918	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3067.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	44.62	19.35	26.82	23.62	18.66	24.11	22.18	42.01	17.49
Merged-chr13-105300865-3	chr13	105300362	105301362	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6377.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	80.66	56.22	33.3	52.63	17.73	40.19	44.36	39.35	41.22
Merged-chr5-122643913-3	chr5	122643407	122644407	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011027)	promoter-TSS (NM_011027)	-4.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	168.76	121.19	81.4	200.39	140.42	135.84	136.25	139.72	53.08
Merged-chr9-32940566-3	chr9	32940051	32941051	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11585.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	6.29	2.76	7.4	8.77	11.66	8.04	9.51	3.98	5.0
Merged-chr2-48816583-3	chr2	48816070	48817070	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	2461.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	18.88	15.21	7.4	12.82	7.46	8.04	17.96	15.48	16.24
Merged-chr1-131060502-3	chr1	131059999	131060999	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	37344.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	20.02	16.13	23.12	34.41	24.26	31.35	23.24	17.69	14.99
Merged-chr13-55327849-3	chr13	55327364	55328364	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016662, intron 4 of 5)	intron (NM_016662, intron 4 of 5)	1866.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	5.15	2.76	5.55	4.72	2.33	0.0	1.06	1.77	5.0
Merged-chr4-141998801-3	chr4	141998299	141999299	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	12852.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	30.89	19.35	11.1	28.34	18.66	32.96	26.4	30.95	17.49
Merged-chr11-54113058-3	chr11	54112557	54113557	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136076, intron 5 of 15)	intron (NM_001136076, intron 5 of 15)	12133.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	14.3	15.21	21.27	32.39	24.26	13.66	8.45	9.29	2.5
Merged-chr11-59472498-3	chr11	59471994	59472994	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178417)	promoter-TSS (NM_178417)	-20.0	NM_178417	237775.0	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	13.16	12.44	21.27	22.27	23.33	20.9	24.29	12.38	5.0
Merged-chr9-61029429-3	chr9	61028934	61029934	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12365.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.72	9.68	21.27	20.92	6.53	12.86	29.57	15.03	13.74
Merged-chr11-117825936-3	chr11	117825451	117826451	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	32.0	NM_027827	71562.0	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	88.67	101.37	86.02	85.01	56.45	85.2	139.42	150.34	75.57
Merged-chr6-50188183-3	chr6	50187693	50188693	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 11 of 13)	intron (NM_001361248, intron 11 of 13)	73576.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	50.34	63.13	53.65	49.25	55.05	24.11	78.16	93.3	48.09
Merged-chr5-91278700-3	chr5	91278204	91279204	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040428, intron 3 of 5)	intron (NR_040428, intron 3 of 5)	4372.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	10.3	5.99	5.55	10.12	7.93	4.82	10.56	3.54	6.25
Merged-chr1-143917780-3	chr1	143917282	143918282	+	994.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86367.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	217.95	252.97	178.52	170.03	142.29	165.58	203.84	233.02	115.54
Merged-chr6-72899529-10	chr6	72899087	72900087	+	994.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347231)	promoter-TSS (NM_001347231)	-295.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	343.23	199.98	244.19	290.13	134.35	167.99	311.57	79.59	126.15
Merged-chr4-130797207-5	chr4	130796712	130797712	+	994.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	4675.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	278.59	330.84	251.59	333.99	292.5	294.99	328.47	461.18	177.99
Merged-chr10-119055840-3	chr10	119055321	119056321	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5322.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	312.91	263.57	135.97	343.43	245.85	166.38	255.6	335.6	129.9
Merged-chr15-74673507-3	chr15	74673013	74674013	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-943.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	28.6	23.96	30.52	29.01	23.33	30.54	22.18	22.11	23.11
Merged-chr3-96098767-3	chr3	96098260	96099260	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5767.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	28.03	14.75	12.95	23.62	14.0	14.47	29.57	19.46	16.24
Merged-chr3-147071151-3	chr3	147070654	147071654	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	218787.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	5.15	11.98	5.55	9.45	7.0	6.43	12.67	5.75	18.74
Merged-chr16-36675503-3	chr16	36675010	36676010	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9433.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	18.88	14.75	24.05	15.52	13.53	20.9	28.52	16.8	16.24
Merged-chr1-61001877-3	chr1	61001402	61002402	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23988.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	5.72	8.29	5.55	18.22	23.33	6.43	8.45	3.1	7.49
Merged-chr14-26612694-3	chr14	26612177	26613177	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285467, intron 12 of 19)	intron (NM_001285467, intron 12 of 19)	-25457.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	13.73	17.97	18.5	22.27	11.2	15.27	21.12	14.15	13.74
Merged-chr2-145699846-3	chr2	145699345	145700345	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1350.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.43	6.45	3.7	7.42	1.4	4.02	2.11	5.75	0.0
Merged-chr17-17860290-3	chr17	17859801	17860801	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5113.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	11.44	8.75	1.85	4.72	7.46	2.41	4.22	7.96	1.25
Merged-chr9-106212102-3	chr9	106211613	106212613	+	994.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011876, intron 3 of 8)	intron (NM_011876, intron 3 of 8)	9005.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	12.59	5.53	9.25	11.47	4.67	12.06	7.39	3.54	2.5
Merged-chr1-87038782-2	chr1	87038296	87039296	+	994.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	51132.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	22.88	29.95	36.07	24.29	17.73	31.35	7.39	4.86	12.49
Merged-chr7-55870521-2	chr7	55870023	55871023	+	994.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	B2_Mm2|SINE|B2	28452.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	8.01	5.99	10.17	16.87	14.46	16.88	33.8	15.92	21.23
Merged-chr10-75765330-3	chr10	75764829	75765829	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172549)	promoter-TSS (NM_172549)	-972.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	45.19	67.74	57.35	58.03	55.51	56.27	71.82	82.24	44.34
Merged-chr13-41268028-3	chr13	41267532	41268532	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	18188.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	34.9	35.02	36.07	20.24	26.12	11.25	23.24	34.05	19.36
Merged-chr9-111047469-3	chr9	111046960	111047960	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9784.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	47.48	29.49	21.27	25.64	20.99	27.33	47.53	30.95	31.85
Merged-chr19-8735780-3	chr19	8735278	8736278	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134139)	promoter-TSS (NM_134139)	-61.0	NM_134139	107071.0	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	91.53	80.64	104.52	88.39	69.04	101.28	78.16	79.15	44.34
Merged-chr1-127135926-3	chr1	127135430	127136430	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69056.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	34.9	28.11	26.82	39.81	21.46	55.46	20.07	22.11	21.23
Merged-chr9-13245725-3	chr9	13245217	13246217	+	994.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033181)	promoter-TSS (NM_001033181)	24.0	NM_001033181	77532.0	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	25.74	25.34	25.9	31.04	28.46	31.35	32.74	30.95	20.61
Merged-chr9-42094891-3	chr9	42094396	42095396	+	994.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011436, intron 3 of 47)	intron (NM_011436, intron 3 of 47)	-17683.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.43	6.45	1.85	10.8	7.0	10.45	7.39	3.98	5.0
Merged-chr13-43122798-3	chr13	43122280	43123280	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005748)	promoter-TSS (NM_001005748)	-59.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	19.45	19.35	12.02	44.53	36.39	20.9	17.96	17.69	8.74
Merged-chr1-39408838-3	chr1	39408363	39409363	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	41012.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	5.15	19.35	20.35	12.14	14.46	8.04	23.24	19.46	11.24
Merged-chr4-46451953-3	chr4	46451449	46452449	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	1023.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	152.17	94.92	203.49	150.46	87.24	147.09	200.68	83.13	76.19
Merged-chr7-81789449-3	chr7	81788924	81789924	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026077)	promoter-TSS (NM_026077)	29.0	NM_026077	67290.0	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	41.76	38.71	55.5	55.33	43.39	67.52	72.88	48.64	54.96
Merged-chr17-26113368-3	chr17	26112902	26113902	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021793)	promoter-TSS (NM_021793)	86.0	NM_021793	60455.0	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|GPI-PLA2|M83|Pgap6|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	82.95	38.25	31.45	41.83	25.66	20.9	35.91	11.5	9.99
Merged-chr10-10744343-3	chr10	10743858	10744858	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114333, intron 5 of 9)	intron (NM_001114333, intron 5 of 9)	-6688.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	20.02	18.43	11.1	22.94	14.46	24.92	24.29	16.8	16.24
Merged-chr6-71223511-3	chr6	71223007	71224007	+	994.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160127, intron 6 of 9)	MLT1B|LTR|ERVL-MaLR	23628.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	25.17	22.58	17.57	25.64	18.66	19.29	31.69	20.78	8.74
Merged-chr9-21547184-3	chr9	21546672	21547672	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021531, exon 1 of 16)	exon (NM_021531, exon 1 of 16)	278.0	NM_153141	59035.0	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	90.38	44.24	83.25	75.57	46.65	59.48	72.88	45.54	45.59
Merged-chr11-95712838-3	chr11	95712358	95713358	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-104.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	176.19	115.66	202.56	225.36	97.5	206.57	260.88	142.38	125.53
Merged-chr7-45361592-3	chr7	45361093	45362093	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029741, exon 2 of 30)	exon (NM_029741, exon 2 of 30)	-4568.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	4.58	3.23	0.0	8.1	7.0	9.65	2.11	4.86	0.62
Merged-chr18-24205869-3	chr18	24205368	24206368	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	-91.0	NM_001361200	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	53.2	40.09	48.1	61.4	21.93	46.62	65.48	21.67	41.84
Merged-chr17-50079034-3	chr17	50078545	50079545	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 4 of 9)	intron (NM_181397, intron 4 of 9)	111452.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	8.01	6.45	0.0	4.72	9.33	6.43	25.35	30.95	23.73
Merged-chr13-37506280-3	chr13	37505791	37506791	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160946.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	24.03	13.82	11.1	29.69	12.6	16.08	22.18	4.86	5.0
Merged-chr5-64237812-3	chr5	64237231	64238231	+	994.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	Lx9|LINE|L1	7374.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	51.48	68.2	62.9	63.42	47.58	69.13	67.6	102.58	72.45
Merged-chr13-49100602-3	chr13	49100093	49101093	+	994.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	47735.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	10.3	10.14	12.02	8.1	7.46	11.25	11.62	5.31	8.74
Merged-chr12-38787894-3	chr12	38787391	38788391	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163154, intron 1 of 9)	intron (NM_001163154, intron 1 of 9)	4180.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	35.47	32.72	19.42	60.72	36.39	39.39	35.91	36.7	18.11
Merged-chr7-126702543-3	chr7	126702049	126703049	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301374, intron 2 of 10)	intron (NM_001301374, intron 2 of 10)	1671.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	29.75	38.25	61.05	29.69	22.86	36.97	44.36	51.73	40.59
Merged-chr16-90312502-3	chr16	90312000	90313000	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-27997.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	4.0	3.23	0.0	6.75	2.33	2.41	1.06	1.77	1.25
Merged-chr1-53845482-3	chr1	53844958	53845958	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	intron (NM_001001883, intron 21 of 28)	-3966.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	84.09	63.13	58.27	89.06	56.45	44.21	81.33	64.56	57.46
Merged-chr5-120775481-3	chr5	120774985	120775985	+	994.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145226, intron 1 of 15)	intron (NM_145226, intron 1 of 15)	2174.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	33.75	35.94	37.0	36.43	52.72	45.82	34.85	34.93	11.87
Merged-chr10-85184466-3	chr10	85183973	85184973	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007771, exon 1 of 13)	5' UTR (NM_007771, exon 1 of 13)	581.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	242.55	176.48	70.3	244.92	184.27	107.71	235.53	157.41	84.94
Merged-chr12-35215000-1	chr12	35214500	35215500	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20103.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	36.04	33.64	29.6	37.78	41.99	28.94	17.96	9.29	24.98
Merged-chr11-106752330-3	chr11	106751826	106752826	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033435, intron 2 of 6)	intron (NM_001033435, intron 2 of 6)	1100.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	157.31	166.8	118.39	165.31	142.75	133.43	145.75	190.57	86.18
Merged-chr14-21280650-2	chr14	21280143	21281143	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	204491.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	8.58	9.22	0.0	19.57	17.26	0.0	6.34	4.42	2.5
Merged-chr2-45693857-1	chr2	45693357	45694357	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2748.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	9.72	7.37	7.4	31.71	23.79	38.58	26.4	15.48	12.49
Merged-chr1-84562850-3	chr1	84562338	84563338	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 4 of 12)	A-rich|Low_complexity|Low_complexity	-133001.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	42.9	35.02	32.37	49.25	55.98	43.4	52.81	40.24	39.35
Merged-chr4-9243681-3	chr4	9243194	9244194	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-25599.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	40.62	34.56	16.65	44.53	41.05	49.03	46.47	45.54	34.35
Merged-chr18-82954141-6	chr18	82953659	82954659	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-33599.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	22.31	18.43	29.6	18.89	15.86	13.66	22.18	9.29	9.37
Merged-chr13-23701365-3	chr13	23700880	23701880	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010424)	TTS (NM_010424)	-2922.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	32.04	39.17	39.77	26.31	19.13	26.53	43.3	32.28	24.36
Merged-chr7-122329281-1	chr7	122328781	122329781	+	994.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40156.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	9.15	5.07	18.5	37.11	27.52	11.25	31.69	16.8	13.12
Merged-chr8-126826614-3	chr8	126826101	126827101	+	994.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22419.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	199.65	158.97	163.72	249.65	156.75	229.88	153.15	179.96	137.4
Merged-chr10-120978736-5	chr10	120978227	120979227	+	993.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	603.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	156.74	93.54	73.07	168.68	94.23	87.61	130.97	61.02	52.46
Merged-chr2-152104895-3	chr2	152104402	152105402	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029688)	promoter-TSS (NM_029688)	-622.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	152.74	110.59	70.3	154.51	98.43	122.98	154.2	112.31	67.45
Merged-chr8-79374599-3	chr8	79374099	79375099	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	24869.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	116.13	141.0	103.59	92.44	99.83	122.98	88.72	109.66	89.31
Merged-chr9-113743407-3	chr9	113742909	113743909	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	1936.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	35.47	47.46	27.75	29.69	23.33	10.45	43.3	25.65	24.98
Merged-chr11-68657097-3	chr11	68656610	68657610	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34805.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	38.33	42.39	43.47	78.94	48.05	78.77	59.15	72.07	87.43
Merged-chr3-21808751-3	chr3	21808233	21809233	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267919.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	23.45	30.87	8.32	50.6	33.59	20.9	25.35	24.32	22.48
Merged-chr4-41353487-3	chr4	41352976	41353976	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1513.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	50.91	60.82	31.45	55.33	59.25	62.7	46.47	55.27	31.85
Merged-chr3-60627774-3	chr3	60627274	60628274	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253710, exon 8 of 8)	3' UTR (NM_001253710, exon 8 of 8)	126595.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	16.02	16.59	9.25	22.27	9.33	9.65	21.12	19.46	12.49
Merged-chr2-163928642-3	chr2	163928168	163929168	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9985.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	94.39	87.09	80.47	132.24	112.43	114.94	40.14	26.97	28.73
Merged-chrX-7422983-3	chrX	7422445	7423445	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027924)	promoter-TSS (NR_027924)	43.0	NR_027924	68355.0	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	8.01	11.06	5.55	18.22	8.86	6.43	8.45	8.4	2.5
Merged-chr5-103655500-3	chr5	103655019	103656019	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028824, exon 1 of 4)	5' UTR (NM_028824, exon 1 of 4)	205.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	20.02	7.37	0.0	15.52	10.26	8.04	12.67	11.94	4.37
Merged-chr3-9902548-3	chr3	9902047	9903047	+	993.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68868.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.3	15.21	3.7	22.27	18.19	24.11	19.01	22.11	13.74
Merged-chr5-65697908-3	chr5	65697383	65698383	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081321)	promoter-TSS (NM_001081321)	-27.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	175.05	67.74	195.17	135.62	72.31	82.79	158.43	42.89	76.82
Merged-chr1-165731693-3	chr1	165731182	165732182	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23588.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	33.18	31.79	20.35	41.83	27.06	36.17	46.47	41.12	19.98
Merged-chr19-56600956-3	chr19	56600458	56601458	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52697.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	81.8	75.57	29.6	58.7	55.98	44.21	27.46	45.54	17.49
Merged-chr13-81691818-3	chr13	81691318	81692318	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081176, intron 3 of 7)	intron (NM_001081176, intron 3 of 7)	19195.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	16.59	10.6	18.5	17.54	18.66	17.68	6.34	9.29	5.62
Merged-chr10-122690889-3	chr10	122690396	122691396	+	993.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	11581.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	25.17	17.51	5.55	24.96	15.39	10.45	26.4	21.67	4.37
Merged-chr12-55642562-3	chr12	55642075	55643075	+	993.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	43658.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	14.87	9.68	11.1	10.12	11.66	11.25	13.73	7.96	14.99
Merged-chr9-46099288-3	chr9	46098761	46099761	+	993.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86441.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	33.18	36.4	12.02	28.34	27.52	44.21	41.19	30.95	26.23
Merged-chr11-113684524-2	chr11	113684017	113685017	+	993.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138598)	promoter-TSS (NM_138598)	83.0	NM_001361593	276852.0	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	112.69	90.77	75.85	105.93	82.11	73.95	120.41	110.1	42.47
Merged-chr10-9717179-3	chr10	9716677	9717677	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32455.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	21.17	24.42	22.2	25.64	14.0	27.33	26.4	21.22	28.73
Merged-chr11-5100054-3	chr11	5099542	5100542	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001283063)	promoter-TSS (NM_001283063)	-123.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	267.15	253.43	174.82	257.74	304.16	243.55	260.88	285.2	128.03
Merged-chr3-88659970-1	chr3	88659470	88660470	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-6828.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.86	1.38	0.0	5.4	1.4	4.82	1.06	2.21	10.62
Merged-chr18-63694028-3	chr18	63693483	63694483	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44E|LTR|ERVK	-1624.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	61.21	47.46	34.22	97.83	89.57	61.89	63.37	74.28	36.22
Merged-chr3-81149349-3	chr3	81148843	81149843	+	993.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357746, intron 3 of 6)	intron (NM_001357746, intron 3 of 6)	112927.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	27.46	13.36	11.1	32.39	15.39	12.06	12.67	10.61	8.12
Merged-chr8-125560995-3	chr8	125560494	125561494	+	993.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	8869.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	10.3	10.6	6.47	10.12	4.67	12.86	13.73	10.17	18.11
Merged-chr10-31600288-2	chr10	31599786	31600786	+	993.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	9439.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	11.44	10.6	9.25	13.49	9.8	12.06	3.17	4.42	7.49
Merged-chrX-74085096-3	chrX	74084591	74085591	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010788, intron 1 of 3)	CpG	599.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	122.99	142.38	154.47	136.97	131.09	131.82	143.64	96.83	92.43
Merged-chr8-126695630-3	chr8	126695129	126696129	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102193.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	42.9	25.8	24.05	16.87	8.86	9.65	21.12	15.48	8.74
Merged-chr14-63131888-3	chr14	63131378	63132378	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	9416.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	262.0	261.26	173.89	301.6	269.18	195.32	270.38	279.89	134.27
Merged-chr1-62750581-3	chr1	62750081	62751081	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	44151.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	18.31	23.04	12.02	12.14	3.73	17.68	7.39	2.21	0.0
Merged-chr2-181237122-3	chr2	181236623	181237623	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 6 of 18)	AT_rich|Low_complexity|Low_complexity	4904.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	6.86	6.45	3.7	6.75	1.87	14.47	16.9	8.4	15.61
Merged-chr8-105965597-3	chr8	105965079	105966079	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045594, intron 1 of 23)	intron (NR_045594, intron 1 of 23)	536.0	NM_001253804	20498.0	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	65.21	47.0	40.7	72.19	45.25	53.85	30.63	27.41	26.85
Merged-chr8-70864886-3	chr8	70864461	70865461	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7953.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	68.65	30.41	5.55	70.17	29.39	16.88	31.69	18.57	9.37
Merged-chr13-67609689-3	chr13	67609206	67610206	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163246)	promoter-TSS (NM_001163246)	1.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	22.31	39.17	15.72	21.59	34.06	10.45	141.53	146.8	56.83
Merged-chr17-37525643-3	chr17	37525141	37526141	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4316.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	97.82	99.53	48.1	37.11	34.99	35.37	92.94	81.8	32.48
Merged-chr8-71273262-3	chr8	71272757	71273757	+	993.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163042)	promoter-TSS (NM_001163042)	543.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	156.17	122.11	181.29	118.08	117.09	170.4	168.99	157.41	118.04
Merged-chr7-133123296-4	chr7	133122791	133123791	+	993.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009980, exon 1 of 11)	5' UTR (NM_009980, exon 1 of 11)	192.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	82.95	70.5	75.85	74.22	70.44	71.54	77.1	61.02	74.32
Merged-chr17-84089811-3	chr17	84089299	84090299	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045458)	TTS (NR_045458)	11139.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	99.54	55.29	49.95	134.94	96.57	59.48	83.44	88.43	33.72
Merged-chr13-14064779-3	chr13	14064158	14065158	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194262, intron 1 of 23)	CpG	874.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	168.18	94.0	95.27	147.09	72.31	86.01	114.07	50.85	56.83
Merged-chr5-121400345-3	chr5	121399855	121400855	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	2373.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	72.65	45.62	46.25	57.35	29.86	45.01	74.99	85.78	41.22
Merged-chr8-105708232-3	chr8	105707756	105708756	+	993.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198299)	promoter-TSS (NM_198299)	-33.0	NM_001357256	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	6.86	8.29	13.87	2.7	2.8	9.65	8.45	6.19	3.12
Merged-chr2-144301058-3	chr2	144300570	144301570	+	993.714294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	30166.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	49.2	48.38	38.85	67.47	36.39	58.68	49.64	44.22	59.33
Merged-chr15-8446606-3	chr15	8446119	8447119	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2156.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	89.24	93.08	33.3	100.53	78.84	89.22	113.01	130.44	53.08
Merged-chr7-45150495-3	chr7	45149999	45150999	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3804.0	NM_029406	68845.0	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	53.2	47.46	34.22	52.63	32.19	59.48	62.31	59.25	48.71
Merged-chr9-110532993-3	chr9	110532489	110533489	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081340, intron 1 of 20)	CpG	392.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	300.9	327.62	294.14	273.94	207.13	201.75	302.07	207.38	186.73
Merged-chr16-32814608-3	chr16	32814099	32815099	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4153.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	37.18	17.05	17.57	23.62	16.33	12.86	17.96	13.71	23.11
Merged-chr5-105654821-3	chr5	105654310	105655310	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45159.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	28.6	12.9	14.8	29.69	22.86	24.11	8.45	2.65	3.75
Merged-chr14-47188875-3	chr14	47188352	47189352	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	561.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	190.49	201.82	163.72	236.15	244.92	229.88	238.7	236.56	151.14
Merged-chr19-10203911-3	chr19	10203420	10204420	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026919)	promoter-TSS (NM_026919)	23.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	423.32	428.07	270.09	377.84	363.88	299.01	329.53	363.02	196.1
Merged-chr6-29526123-3	chr6	29525620	29526620	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012057)	promoter-TSS (NM_012057)	-505.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	247.13	242.37	244.19	198.37	151.15	228.28	220.74	224.18	141.14
Merged-chr13-110598573-3	chr13	110598034	110599034	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	203490.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	58.35	56.22	38.85	66.12	60.65	26.53	30.63	39.8	16.24
Merged-chr19-56756618-1	chr19	56756118	56757118	+	993.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34246.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.44	4.61	7.4	18.22	8.86	12.86	7.39	12.38	7.49
Merged-chr7-4237682-3	chr7	4237205	4238205	+	993.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081239)	promoter-TSS (NM_001081239)	-49.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	223.67	311.03	262.69	290.13	266.84	261.23	290.45	402.81	202.97
Merged-chr14-46742560-1	chr14	46742060	46743060	+	993.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-17981.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	24.03	25.8	19.42	36.43	26.59	34.56	9.51	9.73	13.74
Merged-chr2-148532222-2	chr2	148531722	148532722	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88687.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	26.89	26.26	12.02	40.48	25.19	65.91	25.35	22.11	26.23
Merged-chr7-112285754-2	chr7	112285255	112286255	+	993.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 3 of 25)	intron (NM_001193305, intron 3 of 25)	59919.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	6.86	8.29	3.7	13.49	3.27	12.86	3.17	0.88	3.75
Merged-chr12-91305989-2	chr12	91305506	91306506	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	78403.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	3.43	1.84	1.85	16.19	18.66	4.02	7.39	5.31	5.0
Merged-chr1-65230739-2	chr1	65230235	65231235	+	993.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	44050.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	17.73	23.04	12.95	21.59	28.46	24.11	25.35	30.51	15.61
Merged-chr13-53219690-3	chr13	53219207	53220207	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	66402.0	NM_013846	26564.0	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	24.6	16.13	25.9	22.27	16.79	16.08	40.14	23.43	23.73
Merged-chr14-44104311-3	chr14	44103817	44104817	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001012766)	TTS (NM_001012766)	1430.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	149.88	111.51	64.75	104.58	50.85	62.7	86.61	66.33	47.46
Merged-chr17-26237949-3	chr17	26237448	26238448	+	993.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	6294.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	152.17	132.71	78.62	207.81	128.76	126.19	190.11	200.3	84.94
Merged-chr18-60481210-2	chr18	60480725	60481725	+	993.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134133, intron 1 of 1)	intron (NM_134133, intron 1 of 1)	20758.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	4.58	12.9	3.7	12.14	14.0	10.45	3.17	4.86	6.25
Merged-chr3-84815458-6	chr3	84814945	84815945	+	993.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177773)	promoter-TSS (NM_001177773)	-132.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	187.63	194.91	189.62	138.32	180.54	160.76	157.37	144.59	106.17
Merged-chr4-9770790-3	chr4	9770301	9771301	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	216.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	110.98	170.95	96.2	15.52	14.93	17.68	108.79	103.02	54.33
Merged-chr5-120518329-3	chr5	120517829	120518829	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	intron (NM_001177595, intron 2 of 13)	7137.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	343.8	284.3	186.84	295.53	233.25	173.62	321.08	340.91	119.28
Merged-chr1-92676414-3	chr1	92675928	92676928	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27587.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	81.23	83.86	48.1	81.64	85.37	63.5	72.88	61.9	56.21
Merged-chr7-120870239-3	chr7	120869726	120870726	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	19037.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	70.36	72.8	42.55	51.95	54.11	61.09	50.7	35.82	30.6
Merged-chr18-60750736-3	chr18	60750242	60751242	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	45.19	31.79	44.4	98.51	45.25	54.66	38.02	31.39	25.61
Merged-chr11-97684822-3	chr11	97684313	97685313	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139311, exon 20 of 20)	3' UTR (NM_139311, exon 20 of 20)	-1139.0	NM_001085500	217149.0	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	69.22	41.47	42.55	87.71	40.59	85.2	99.28	78.26	48.09
Merged-chr4-3768831-3	chr4	3768324	3769324	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MTA_Mm|LTR|ERVL-MaLR	53860.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	89.81	66.81	83.25	98.51	62.98	55.46	80.27	85.34	37.47
Merged-chr11-117072334-3	chr11	117071828	117072828	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4455.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	8.01	3.23	2.77	5.4	2.33	4.02	2.11	1.77	5.0
Merged-chr12-113222237-3	chr12	113221753	113222753	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36350.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	14.87	6.91	5.55	21.59	7.46	8.04	3.17	4.86	7.49
Merged-chr16-21630766-3	chr16	21630267	21631267	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	63898.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	50.34	70.5	41.62	76.24	62.98	89.22	62.31	84.45	68.7
Merged-chr8-84192178-3	chr8	84191676	84192676	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13215.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	314.06	299.05	142.44	350.18	273.84	156.74	235.53	264.86	134.27
Merged-chr10-87025082-3	chr10	87024584	87025584	+	993.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17142.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.57	0.92	0.0	2.02	0.93	0.0	0.0	0.88	4.37
Merged-chr5-96921725-3	chr5	96921227	96922227	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 1 of 2)	intron (NR_131152, intron 1 of 2)	455.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	185.35	224.86	127.64	188.92	170.74	158.35	190.11	237.0	128.03
Merged-chr5-105062620-3	chr5	105062117	105063117	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9056.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	45.76	62.21	49.95	31.71	22.39	29.74	34.85	42.45	22.48
Merged-chr1-134406315-2	chr1	134405833	134406833	+	993.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028057, exon 2 of 9)	exon (NM_028057, exon 2 of 9)	552.0	NR_149307	72017.0	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	119.56	99.99	102.67	78.94	91.44	114.94	82.38	79.15	76.19
Merged-chr3-61404382-2	chr3	61403915	61404915	+	993.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39908.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	6.86	6.91	12.95	33.74	26.12	33.76	39.08	29.18	23.73
Merged-chr8-13648584-3	chr8	13648062	13649062	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29025.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	127.57	134.55	147.07	224.01	158.61	162.37	180.61	187.04	90.56
Merged-chr4-152165621-3	chr4	152165125	152166125	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6758.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	40.62	31.33	37.0	30.36	26.59	51.44	49.64	42.89	40.59
Merged-chr2-130129877-2	chr2	130129356	130130356	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289747, intron 2 of 13)	ORR1D2|LTR|ERVL-MaLR	6581.0	NM_177726	241636.0	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	20.59	16.13	24.97	2.7	2.33	1.61	13.73	15.03	18.11
Merged-chr2-168556294-3	chr2	168555811	168556811	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	34054.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	107.55	85.71	135.04	88.39	76.51	64.3	88.72	52.18	26.85
Merged-chr10-93689054-3	chr10	93688548	93689548	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-5726.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	109.83	126.72	36.07	110.65	153.01	77.16	52.81	66.33	48.09
Merged-chr16-33529913-3	chr16	33529409	33530409	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	11314.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	66.93	47.92	37.92	186.22	107.76	114.94	64.43	28.3	22.48
Merged-chr12-52687537-2	chr12	52687035	52688035	+	993.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11848.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	13.73	11.52	3.7	14.17	6.53	4.82	4.22	3.1	5.62
Merged-chr2-133511651-3	chr2	133511143	133512143	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40516.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	10.3	5.53	5.55	14.17	7.46	9.65	16.9	11.5	5.0
Merged-chr17-6967819-3	chr17	6967315	6968315	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6659.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	12.01	19.35	1.85	10.12	13.53	9.65	23.24	22.99	10.62
Merged-chr11-121091181-3	chr11	121090654	121091654	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10015.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	43.48	26.73	43.47	31.71	15.39	24.11	51.75	28.3	24.36
Merged-chr10-122615821-3	chr10	122615339	122616339	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32500.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	14.87	15.67	8.32	38.46	14.93	24.92	39.08	46.87	23.11
Merged-chr4-32268100-3	chr4	32267598	32268598	+	993.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149337.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	28.03	23.96	26.82	20.24	20.99	21.7	14.79	20.34	11.24
Merged-chr11-96311664-3	chr11	96311163	96312163	+	993.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4753.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	54.35	69.12	49.95	49.93	42.92	45.01	60.2	42.01	27.48
Merged-chr8-79398653-3	chr8	79398169	79399169	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	CpG	799.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	187.63	141.46	142.44	189.6	148.82	171.21	196.45	154.76	111.17
Merged-chr3-96708522-3	chr3	96708037	96709037	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030094)	promoter-TSS (NM_030094)	23.0	NM_001162925	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	8.01	5.07	6.47	6.75	1.87	0.0	2.11	2.65	3.75
Merged-chr2-14244844-3	chr2	14244341	14245341	+	993.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	15427.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	46.34	48.38	42.55	41.16	36.39	53.05	54.92	33.6	38.1
Merged-chr11-3135043-2	chr11	3134548	3135548	+	993.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 27 of 32)	intron (NM_030207, intron 27 of 32)	11027.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	38.9	37.78	96.2	55.33	47.58	116.55	0.0	0.0	136.77
Merged-chr9-89253594-2	chr9	89253083	89254083	+	993.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	42199.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	8.58	8.29	2.77	13.49	11.2	14.47	10.56	7.07	11.87
Merged-chr8-122112444-1	chr8	122111944	122112944	+	993.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134420.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	12.01	6.91	0.0	18.89	19.13	9.65	6.34	3.54	4.37
Merged-chr3-68981026-3	chr3	68980539	68981539	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026641, intron 5 of 19)	RSINE1|SINE|B4	23531.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	26.89	27.65	14.8	37.78	32.19	16.08	22.18	26.97	22.48
Merged-chr6-120145635-3	chr6	120145127	120146127	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-48196.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	22.31	11.52	12.02	28.34	25.66	20.09	20.07	15.48	15.61
Merged-chr14-70056363-3	chr14	70055899	70056899	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-21046.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	110.98	90.77	73.07	90.41	59.25	52.25	148.92	137.51	73.69
Merged-chr8-83695521-3	chr8	83695035	83696035	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	-1474.0	NM_001199593	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	41.76	35.94	51.8	39.81	25.19	62.7	61.26	42.01	35.6
Merged-chr7-34448551-3	chr7	34448042	34449042	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58837.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	9.72	7.37	35.15	12.14	11.2	28.94	5.28	7.96	6.25
Merged-chr11-53351735-3	chr11	53351211	53352211	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	944.0	NM_033565	93736.0	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	276.87	272.32	160.94	277.31	278.51	213.81	238.7	199.86	153.01
Merged-chr4-105557694-3	chr4	105557208	105558208	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	400361.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	18.88	35.48	35.15	41.83	47.58	53.85	51.75	44.66	41.84
Merged-chr5-21768675-3	chr5	21768206	21769206	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009584, exon 8 of 17)	exon (NM_009584, exon 8 of 17)	16459.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	59.49	59.9	46.25	58.03	41.05	45.01	96.11	78.71	44.34
Merged-chr13-101740176-3	chr13	101739670	101740670	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	28047.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	54.92	50.69	56.42	30.36	23.79	31.35	53.87	61.46	47.46
Merged-chr2-153120306-3	chr2	153119815	153120815	+	993.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	11847.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	45.76	44.7	39.77	106.61	76.04	95.65	76.05	82.69	64.95
Merged-chr5-117375008-4	chr5	117374437	117375437	+	993.28125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 5 of 8)	intron (NM_021539, intron 5 of 8)	14086.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	133.29	89.85	72.15	129.55	82.11	91.63	128.85	102.14	65.58
Merged-chr9-90021630-3	chr9	90021120	90022120	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 26 of 26)	intron (NM_001357743, intron 26 of 26)	-32647.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	11.44	8.75	12.02	14.84	4.2	0.8	17.96	11.94	12.49
Merged-chr7-100907488-3	chr7	100906989	100907989	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 1 of 20)	intron (NM_001081116, intron 1 of 20)	24672.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	10.3	7.83	3.7	7.42	1.4	4.02	2.11	3.54	2.5
Merged-chr9-124020065-3	chr9	124019577	124020577	+	993.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1894.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	117.84	109.21	69.37	103.91	80.24	98.06	100.34	91.97	58.08
Merged-chr9-78538203-3	chr9	78537714	78538714	+	993.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276452, exon 11 of 11)	exon (NM_001276452, exon 11 of 11)	49831.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	149.88	142.38	86.02	158.56	146.02	122.98	123.57	180.4	84.94
Merged-chr19-5366605-4	chr19	5366130	5367130	+	993.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	-183.0	NM_027236	69860.0	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	101.25	82.48	147.07	112.0	73.24	110.12	143.64	107.45	83.69
Merged-chr8-108721036-3	chr8	108720518	108721518	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	6374.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	36.61	27.65	39.77	36.43	20.99	36.17	29.57	15.48	25.61
Merged-chr13-34651543-3	chr13	34651056	34652056	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1125.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	131.57	148.83	54.57	170.03	145.55	149.5	100.34	80.92	55.58
Merged-chr6-125685632-3	chr6	125685127	125686127	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-4792.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	28.03	41.93	41.62	39.13	17.73	41.8	38.02	34.93	21.86
Merged-chr6-122811889-3	chr6	122811380	122812380	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8304.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	169.9	157.13	109.14	164.63	159.55	151.11	184.83	188.81	121.78
Merged-chr2-180255860-3	chr2	180255357	180256357	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-1522.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	22.88	21.66	11.1	28.34	39.65	45.82	26.4	19.46	14.99
Merged-chr9-68957267-3	chr9	68956778	68957778	+	993.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191932.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	8.01	8.75	1.85	8.1	5.13	1.61	5.28	2.21	4.37
Merged-chr15-68175882-3	chr15	68175386	68176386	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 6 of 13)	intron (NR_152182, intron 6 of 13)	82970.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	9.15	5.07	12.95	14.84	13.06	6.43	6.34	6.63	10.62
Merged-chr2-119675572-4	chr2	119675056	119676056	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030112, intron 1 of 17)	CpG	488.0	NM_030112	76246.0	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	214.52	165.88	148.92	190.27	181.47	132.63	197.51	136.19	121.16
Merged-chr6-39680802-3	chr6	39680297	39681297	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139294, intron 2 of 21)	Lx7|LINE|L1	44666.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	20.02	40.55	49.95	29.01	24.72	24.11	45.42	41.56	31.85
Merged-chr15-83442662-3	chr15	83442169	83443169	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	5211.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	11.44	16.13	22.2	18.22	10.73	24.11	7.39	9.29	18.11
Merged-chr11-119913816-3	chr11	119913372	119914372	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085498)	promoter-TSS (NM_001085498)	62.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	56.06	52.53	48.1	82.99	83.51	69.13	85.55	67.21	39.35
Merged-chr15-27672308-3	chr15	27671781	27672781	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9261.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	65.79	63.13	76.77	83.66	74.17	86.81	70.76	72.07	53.08
Merged-chr8-57800022-3	chr8	57799521	57800521	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-146966.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	38.9	40.55	27.75	18.22	14.46	12.86	35.91	42.01	23.73
Merged-chr18-20803226-3	chr18	20802714	20803714	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-56810.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	20.02	16.13	13.87	33.06	26.59	32.15	29.57	22.55	23.11
Merged-chr4-123635580-3	chr4	123635075	123636075	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	19155.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	20.02	28.57	37.0	26.99	20.99	36.97	26.4	25.2	28.1
Merged-chr9-70839242-3	chr9	70838731	70839731	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	95577.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	216.24	154.82	105.44	167.33	114.29	124.59	184.83	200.3	91.18
Merged-chr5-115155996-3	chr5	115155488	115156488	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175403, intron 1 of 4)	intron (NM_175403, intron 1 of 4)	2188.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	16.59	14.28	15.72	21.59	16.33	16.88	21.12	16.8	19.36
Merged-chr7-100511819-3	chr7	100511318	100512318	+	993.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153527, exon 2 of 8)	exon (NM_153527, exon 2 of 8)	2997.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	38.9	18.43	20.35	37.11	27.06	24.92	132.02	177.31	92.43
Merged-chr10-80664602-3	chr10	80664121	80665121	+	993.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021462)	TTS (NM_021462)	-7550.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	72.65	37.78	47.17	84.34	57.38	66.71	65.48	80.92	49.96
Merged-chr6-148444349-3	chr6	148443844	148444844	+	993.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	8.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	36.04	26.26	44.4	26.99	16.33	24.92	31.69	26.97	9.99
Merged-chr3-95230814-3	chr3	95230310	95231310	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038708, intron 1 of 4)	intron (NM_001038708, intron 1 of 4)	1867.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	148.16	129.48	92.5	110.65	65.31	96.45	128.85	161.83	108.04
Merged-chr2-154549776-3	chr2	154549267	154550267	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029305, exon 3 of 3)	exon (NM_029305, exon 3 of 3)	863.0	NM_029305	75480.0	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	68.65	38.25	17.57	168.68	165.61	114.14	145.75	160.51	69.95
Merged-chr16-43398033-3	chr16	43397527	43398527	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	22169.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	39.47	47.92	56.42	49.93	49.92	32.96	44.36	58.37	26.85
Merged-chr7-25129003-3	chr7	25128500	25129500	+	993.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 1 of 13)	B1_Mus2|SINE|Alu	3460.0	NM_011138	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	108.69	107.36	65.67	145.74	78.84	117.35	194.34	140.17	92.43
Merged-chr8-95055134-2	chr8	95054636	95055636	+	993.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042715)	promoter-TSS (NM_001042715)	33.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	1.14	0.92	0.0	6.75	0.0	1.61	5.28	3.1	4.37
Merged-chr16-33966994-3	chr16	33966490	33967490	+	993.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	48.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	150.45	147.45	98.05	153.16	133.89	133.43	137.3	127.34	68.7
Merged-chr2-31769621-6	chr2	31769156	31770156	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	9483.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	292.32	307.8	146.14	255.72	232.79	187.28	180.61	228.16	129.9
Merged-chr11-88162251-3	chr11	88161745	88162745	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7320.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	17.16	4.61	3.7	9.45	4.67	0.0	5.28	1.33	0.62
Merged-chr1-92675995-3	chr1	92675511	92676511	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27170.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	68.65	76.49	40.7	71.52	83.51	68.32	66.54	66.33	56.21
Merged-chr3-32365707-3	chr3	32365139	32366139	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009517)	promoter-TSS (NM_009517)	26.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	29.75	31.79	51.8	35.09	23.79	44.21	30.63	30.95	11.24
Merged-chr16-11270815-3	chr16	11270299	11271299	+	993.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-16354.0	NR_035466	100316833.0		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	13.16	10.14	4.62	7.42	7.46	17.68	20.07	6.63	5.62
Merged-chr5-43770766-3	chr5	43770284	43771284	+	993.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159963, exon 3 of 11)	exon (NM_001159963, exon 3 of 11)	11365.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	26.31	24.42	12.95	32.39	21.46	45.01	26.4	25.2	31.85
Merged-chr4-123139788-5	chr4	123139280	123140280	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	161.0	NM_019489	56031.0	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	94.39	120.73	70.3	75.57	83.97	62.7	99.28	77.82	63.7
Merged-chr11-3134494-2	chr11	3133981	3134981	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030207, exon 29 of 33)	exon (NM_030207, exon 29 of 33)	10460.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	33.75	34.1	78.62	50.6	44.32	92.44	1.06	0.88	93.68
Merged-chr2-72196324-1	chr2	72195824	72196824	+	993.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-89313.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.0	3.23	1.85	4.05	3.27	1.61	13.73	7.96	7.49
Merged-chr10-80929234-3	chr10	80928770	80929770	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-821.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	303.76	271.4	223.84	277.31	244.45	228.28	262.99	290.06	144.89
Merged-chr1-182953867-3	chr1	182953350	182954350	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	-938.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	26.89	27.19	23.12	14.84	9.8	28.94	15.84	11.94	3.12
Merged-chr14-14600034-4	chr14	14599459	14600459	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103066.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	43.48	70.5	61.05	58.03	49.45	62.7	35.91	50.85	48.09
Merged-chr18-83817594-3	chr18	83817089	83818089	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	268973.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	18.88	13.82	8.32	24.96	10.26	12.06	22.18	10.61	8.12
Merged-chr15-64023939-3	chr15	64023532	64024532	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	-25966.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	69.79	76.95	73.07	99.86	55.05	54.66	67.6	60.58	49.34
Merged-chr10-117982756-1	chr10	117982256	117983256	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	54.35	64.51	38.85	62.75	73.24	67.52	70.76	72.96	40.59
Merged-chr4-63205714-3	chr4	63205207	63206207	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9705.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	21.74	22.12	22.2	18.22	14.93	11.25	19.01	24.76	19.36
Merged-chr19-56390004-1	chr19	56389504	56390504	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286552)	promoter-TSS (NM_001286552)	34.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	12.01	11.98	12.95	33.06	24.72	18.49	33.8	26.53	8.74
Merged-chr4-32518525-1	chr4	32518025	32519025	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	L2a|LINE|L2	53137.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	4.58	4.61	7.4	6.07	3.73	8.84	1.06	4.86	7.49
Merged-chr9-78528106-3	chr9	78527615	78528615	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-46391.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	270.58	232.24	174.82	271.24	261.71	188.89	284.11	292.27	142.39
Merged-chr19-9082674-3	chr19	9082147	9083147	+	993.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011681)	TTS (NM_011681)	5309.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	2.29	2.76	2.77	3.37	0.47	7.23	2.11	3.98	0.0
Merged-chr17-81524874-1	chr17	81524374	81525374	+	993.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	URR1A|DNA|hAT-Charlie	213513.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	10.3	18.43	25.9	11.47	14.46	28.13	8.45	7.96	12.49
Merged-chr5-137046143-3	chr5	137045635	137046635	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007457)	promoter-TSS (NM_007457)	-27.0	NM_007457	11769.0	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	8.01	5.53	9.25	8.1	8.86	4.82	15.84	6.19	3.75
Merged-chr8-95715878-3	chr8	95715405	95716405	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001035123)	promoter-TSS (NM_001035123)	-8.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	19.45	14.75	20.35	4.05	1.4	8.04	9.51	4.42	1.25
Merged-chr1-105993411-3	chr1	105992925	105993925	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	3019.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	150.45	195.83	160.94	178.8	172.61	121.37	189.06	207.38	88.68
Merged-chr13-97561159-3	chr13	97560669	97561669	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 1 of 2)	intron (NR_046157, intron 1 of 2)	1169.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	69.22	55.29	27.75	60.05	45.25	41.8	43.3	45.54	30.6
Merged-chr8-40961919-3	chr8	40961403	40962403	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	35670.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.43	2.3	1.85	4.05	1.87	4.82	3.17	3.1	3.75
Merged-chr1-62229324-3	chr1	62228768	62229768	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 13 of 22)	intron (NM_001081050, intron 13 of 22)	-93159.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	4.58	4.61	14.8	4.05	9.8	4.82	3.17	1.77	5.0
Merged-chr2-129330751-3	chr2	129330251	129331251	+	992.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20779.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	26.31	15.67	26.82	20.24	11.2	24.11	19.01	12.82	14.99
Merged-chr5-112991396-3	chr5	112990899	112991899	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	24139.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	41.76	54.83	40.7	52.63	35.92	40.19	20.07	21.22	11.87
Merged-chr9-95845260-3	chr9	95844759	95845759	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033210)	promoter-TSS (NM_001033210)	20.0	NM_001033210	102502.0	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	5.72	4.61	7.4	7.42	1.87	6.43	3.17	3.54	0.0
Merged-chrX-140492113-3	chrX	140491609	140492609	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35506.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	7.44	10.6	7.4	18.22	15.86	13.66	12.67	15.48	16.86
Merged-chr14-17660093-3	chr14	17659574	17660574	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-886.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	139.58	195.37	148.92	118.75	136.22	127.0	116.18	111.87	69.32
Merged-chr3-88149176-3	chr3	88148659	88149659	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6787.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	53.77	59.9	51.8	37.11	45.25	49.83	68.65	58.37	57.46
Merged-chr17-26677288-3	chr17	26676783	26677783	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025272, intron 1 of 3)	intron (NM_025272, intron 1 of 3)	887.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	278.02	270.02	130.42	296.88	336.82	217.83	318.97	380.71	98.05
Merged-chr3-81039496-3	chr3	81038994	81039994	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3078.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	46.34	34.56	36.07	61.4	38.25	48.23	31.69	39.8	26.85
Merged-chr10-67648386-3	chr10	67647913	67648913	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76454.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	60.07	65.89	54.57	79.62	50.85	47.42	52.81	84.45	38.1
Merged-chr5-34334512-3	chr5	34334029	34335029	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	41.76	37.78	51.8	39.81	18.19	28.94	48.58	54.39	56.21
Merged-chr2-157688678-3	chr2	157688141	157689141	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-48760.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	20.02	10.14	11.1	18.89	11.66	15.27	24.29	14.15	13.74
Merged-chr10-61121939-3	chr10	61121443	61122443	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25741.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	92.67	126.72	77.7	72.87	66.71	86.81	116.18	131.77	72.45
Merged-chr12-113119683-3	chr12	113119178	113120178	+	992.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054081, intron 3 of 19)	intron (NM_054081, intron 3 of 19)	-20558.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	8.01	10.6	3.7	4.05	7.0	3.22	5.28	4.86	5.0
Merged-chr6-146271328-2	chr6	146270827	146271827	+	992.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	230896.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	6.29	5.53	7.4	10.8	19.59	13.66	10.56	3.1	1.25
Merged-chr11-117779087-3	chr11	117778606	117779606	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145439, intron 2 of 19)	intron (NM_145439, intron 2 of 19)	542.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	211.09	173.72	194.24	195.67	140.42	194.52	183.78	206.49	158.01
Merged-chr2-6469405-3	chr2	6468897	6469897	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116661.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	9.15	2.3	7.4	8.77	2.33	10.45	7.39	3.1	4.37
Merged-chr3-108563359-5	chr3	108562839	108563839	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026198)	promoter-TSS (NM_026198)	-873.0	NM_026198	67495.0	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	130.43	148.83	144.29	114.03	94.7	93.24	133.08	184.83	106.79
Merged-chr17-87302543-3	chr17	87302023	87303023	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19637.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	169.9	165.42	150.77	152.49	138.55	154.33	142.59	159.62	105.55
Merged-chr3-96661072-3	chr3	96660580	96661580	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302471, intron 27 of 29)	intron (NM_001302471, intron 27 of 29)	-9051.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	34.9	31.79	52.72	51.95	20.06	28.13	21.12	23.43	36.85
Merged-chr10-117435128-3	chr10	117434634	117435634	+	992.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12301.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	141.3	132.71	52.72	145.06	120.36	86.81	110.9	96.83	37.47
Merged-chr4-44973622-3	chr4	44973121	44974121	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	6.86	1.84	5.55	4.05	0.47	2.41	2.11	3.54	3.75
Merged-chr10-78481088-3	chr10	78480590	78481590	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16142.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	85.81	66.35	56.42	85.69	55.51	84.4	73.93	59.69	39.35
Merged-chr10-12923187-3	chr10	12922674	12923674	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038027)	promoter-TSS (NR_038027)	-47.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	42.33	40.55	40.7	56.0	50.38	53.85	47.53	61.46	28.73
Merged-chr10-59636887-3	chr10	59636386	59637386	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20194.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	84.66	85.25	49.95	93.79	78.84	67.52	79.21	57.92	36.85
Merged-chr10-121516408-3	chr10	121515921	121516921	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40171.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	6.29	5.07	5.55	13.49	8.4	1.61	7.39	3.98	2.5
Merged-chr8-126598453-3	chr8	126597958	126598958	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5022.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	28.03	16.13	12.02	44.53	17.73	14.47	28.52	32.28	11.24
Merged-chr2-118011917-3	chr2	118011425	118012425	+	992.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	99277.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	15.45	14.28	9.25	21.59	18.66	16.88	32.74	32.72	27.48
Merged-chr14-51894510-2	chr14	51894045	51895045	+	992.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039676, intron 3 of 3)	intron (NM_001039676, intron 3 of 3)	935.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	42.9	34.56	33.3	41.16	34.06	18.49	12.67	7.96	9.99
Merged-chr10-49075632-2	chr10	49075134	49076134	+	992.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	712303.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	4.58	1.38	5.55	45.88	6.53	15.27	8.45	4.86	6.25
Merged-chr15-39943264-3	chr15	39942719	39943719	+	992.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	CpG	775.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	71.51	58.52	59.2	99.18	111.5	90.83	59.15	60.13	41.84
Merged-chr13-115136973-3	chr13	115136480	115137480	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35016.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	21.17	16.59	15.72	19.57	18.19	21.7	20.07	25.65	19.36
Merged-chr8-128488679-3	chr8	128488161	128489161	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 12 of 16)	intron (NM_001358959, intron 12 of 16)	129420.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	36.04	45.16	36.07	53.3	36.85	36.97	41.19	46.87	45.59
Merged-chr3-144123664-3	chr3	144123184	144124184	+	992.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78648.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	40.04	40.55	77.7	16.87	23.79	32.96	38.02	43.77	33.72
Merged-chr4-89137609-5	chr4	89137094	89138094	+	992.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	CpG	224.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	46.34	31.33	30.52	69.5	65.31	57.87	36.97	52.18	32.48
Merged-chr5-36814729-3	chr5	36814226	36815226	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 11 of 18)	intron (NM_008550, intron 11 of 18)	15923.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	16.02	10.6	15.72	14.17	10.73	8.04	7.39	7.96	9.99
Merged-chr17-69157565-3	chr17	69157052	69158052	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013813, intron 1 of 21)	intron (NM_013813, intron 1 of 21)	808.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	96.11	105.06	128.57	116.73	106.83	122.18	146.81	115.85	64.95
Merged-chr16-38400057-1	chr16	38399557	38400557	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134102, intron 9 of 10)	intron (NM_134102, intron 9 of 10)	33088.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	8.58	3.69	9.25	8.77	3.73	4.82	7.39	5.31	6.25
Merged-chr8-111526781-3	chr8	111526270	111527270	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4663.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	30.32	22.58	16.65	8.77	7.93	1.61	32.74	30.07	12.49
Merged-chr4-132608409-3	chr4	132607911	132608911	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30635.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	30.32	10.14	9.25	41.83	20.53	18.49	23.24	21.22	5.0
Merged-chr1-178303562-2	chr1	178303078	178304078	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15575.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	1.14	1.38	2.77	2.02	1.4	0.0	4.22	1.77	4.37
Merged-chr9-22314193-3	chr9	22313687	22314687	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6549.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	132.72	141.92	70.3	117.4	76.97	76.36	116.18	141.49	71.2
Merged-chr10-67748800-3	chr10	67748307	67749307	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163855.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	37.18	39.17	19.42	49.25	29.39	36.97	26.4	37.14	21.86
Merged-chr7-19360102-3	chr7	19359584	19360584	+	992.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-601.0	NM_145822	70333.0	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	56.06	66.81	54.57	45.88	28.92	49.83	66.54	75.17	41.22
Merged-chr6-146222827-1	chr6	146222327	146223327	+	992.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	279396.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	21.17	9.22	12.02	29.69	21.93	30.54	15.84	19.01	14.36
Merged-chr10-61452342-2	chr10	61451849	61452849	+	992.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010124, intron 1 of 2)	CpG	320.0	NM_010124	13688.0	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	228.25	253.43	247.89	248.3	243.52	216.22	260.88	273.26	164.88
Merged-chr11-121769006-2	chr11	121768509	121769509	+	992.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61209.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	2.86	2.3	1.85	5.4	3.73	3.22	8.45	4.86	0.62
Merged-chr1-13295715-2	chr1	13295224	13296224	+	992.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	Tigger5|DNA|TcMar-Tigger	76705.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	18.88	9.68	3.7	11.47	6.53	8.04	13.73	7.96	11.87
Merged-chr10-89745665-3	chr10	89745156	89746156	+	992.6587519999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 1 of 20)	CpG	665.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	109.83	91.24	56.42	112.68	111.5	73.14	104.56	74.28	49.34
Merged-chr19-5625508-3	chr19	5624995	5625995	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11995.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	25.17	15.67	10.17	13.49	13.06	16.88	17.96	6.63	16.86
Merged-chr16-33691493-3	chr16	33690994	33691994	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	7028.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	36.61	24.42	35.15	43.18	16.33	16.88	36.97	27.41	26.85
Merged-chr11-17180910-3	chr11	17180405	17181405	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	21607.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	18.31	17.05	12.95	22.27	16.79	27.33	12.67	10.17	18.11
Merged-chr5-66051822-3	chr5	66051333	66052333	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	MIR|SINE|MIR	46346.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	22.31	21.2	11.1	21.59	20.53	33.76	29.57	35.37	28.73
Merged-chr17-47011159-3	chr17	47010651	47011651	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177374)	promoter-TSS (NM_001177374)	-619.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	76.08	77.41	64.75	76.92	58.31	71.54	92.94	89.76	63.7
Merged-chr9-40318335-3	chr9	40317825	40318825	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	2998.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	29.75	27.19	9.25	32.39	15.86	3.22	11.62	10.61	3.75
Merged-chr18-76929421-3	chr18	76928922	76929922	+	992.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025409)	promoter-TSS (NM_025409)	-605.0	NM_025409	66191.0	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	34.9	56.68	46.25	31.71	50.38	45.82	66.54	65.0	41.22
Merged-chr15-25531115-3	chr15	25530608	25531608	+	992.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91442.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	28.6	38.71	39.77	27.66	13.53	16.08	15.84	16.36	14.99
Merged-chr1-155051119-5	chr1	155050592	155051592	+	992.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32172.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	298.61	277.39	140.59	311.04	275.24	189.69	279.89	370.98	154.88
Merged-chr4-138012326-2	chr4	138011839	138012839	+	992.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	14514.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	76.08	53.91	46.25	81.64	72.31	59.48	2.11	2.65	1.87
Merged-chr3-137867776-5	chr3	137867243	137868243	+	992.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033155)	promoter-TSS (NM_001033155)	68.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	136.15	110.59	103.59	105.93	83.04	90.02	166.88	117.17	116.16
Merged-chr7-130866334-3	chr7	130865826	130866826	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 1 of 9)	CpG	602.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	208.23	160.35	145.22	202.42	157.21	145.49	213.35	151.22	70.57
Merged-chr5-67327422-3	chr5	67326920	67327920	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178651, intron 4 of 17)	intron (NM_178651, intron 4 of 17)	20465.0	NM_001310629	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	39.47	48.38	35.15	59.38	40.59	52.25	80.27	80.47	52.46
Merged-chr17-34649382-3	chr17	34648885	34649885	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017406, intron 5 of 17)	intron (NM_017406, intron 5 of 17)	2239.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	53.77	45.16	61.97	31.04	9.8	19.29	20.07	21.67	13.12
Merged-chr11-107594156-3	chr11	107593661	107594661	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-43561.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	28.6	32.25	11.1	28.34	24.26	25.72	69.71	65.88	13.74
Merged-chr8-37215765-3	chr8	37215281	37216281	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191543.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.43	9.22	13.87	10.12	10.26	10.45	10.56	13.27	5.0
Merged-chr12-91852947-3	chr12	91852457	91853457	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3800.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	6.29	3.69	0.0	2.7	5.6	8.04	3.17	9.29	2.5
Merged-chr1-9769761-3	chr1	9769277	9770277	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040462, intron 2 of 3)	RMER4B|LTR|ERVK	-21395.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	6.86	4.15	11.1	5.4	5.13	3.22	5.28	5.75	1.25
Merged-chr7-143449745-3	chr7	143449239	143450239	+	992.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11311.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	2.29	5.53	3.7	4.72	2.8	1.61	6.34	0.88	0.0
Merged-chr9-13298072-3	chr9	13297548	13298548	+	992.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51092.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	86.95	94.0	117.47	89.74	77.44	93.24	90.83	84.45	51.21
Merged-chr6-136466107-3	chr6	136465629	136466629	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50560.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	49.2	59.44	35.15	45.88	48.05	46.62	49.64	61.02	32.48
Merged-chr5-122146499-3	chr5	122146010	122147010	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8448.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	50.34	41.47	48.1	52.63	48.05	63.5	62.31	48.64	49.34
Merged-chr16-24282657-3	chr16	24282166	24283166	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110684.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	16.02	11.06	3.7	16.87	6.53	0.8	17.96	15.48	9.99
Merged-chr18-53904448-3	chr18	53903942	53904942	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42329.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	92.67	77.87	56.42	70.17	56.91	55.46	82.38	81.36	32.48
Merged-chr11-87025542-3	chr11	87025033	87026033	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31771.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	83.52	52.07	73.07	145.74	120.36	136.64	136.25	145.92	88.68
Merged-chr7-91506810-2	chr7	91506307	91507307	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	416021.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	6.86	9.68	9.25	9.45	12.13	11.25	1.06	2.21	2.5
Merged-chr9-90108471-3	chr9	90107981	90108981	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 2 of 12)	PB1|SINE|Alu	6339.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	83.52	88.47	52.72	74.89	50.38	40.99	129.91	151.66	63.7
Merged-chr10-51491288-3	chr10	51490778	51491778	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291894, intron 2 of 8)	intron (NM_001291894, intron 2 of 8)	380.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	316.92	318.86	168.34	329.26	357.35	221.85	306.29	371.42	139.89
Merged-chr2-4882032-6	chr2	4881564	4882564	+	992.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175400, intron 1 of 8)	CpG	500.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	132.72	98.61	158.17	150.46	90.5	147.09	152.09	91.09	94.93
Merged-chr1-43811960-3	chr1	43811468	43812468	+	992.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	15740.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	66.93	84.32	55.5	64.77	72.78	97.26	55.98	85.34	55.58
Merged-chr4-119239443-4	chr4	119238951	119239951	+	992.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019782, intron 5 of 15)	intron (NM_019782, intron 5 of 15)	5622.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	21.17	23.96	26.82	21.59	20.06	28.94	26.4	16.8	24.98
Merged-chr7-90216721-3	chr7	90216234	90217234	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48698.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	12.59	10.6	3.7	21.59	15.86	11.25	17.96	15.48	9.99
Merged-chr2-127788913-3	chr2	127788409	127789409	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016902)	promoter-TSS (NM_016902)	-18.0	NM_001355429	53885.0	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	42.9	49.3	27.75	57.35	54.58	26.53	46.47	61.9	16.24
Merged-chr3-69655219-3	chr3	69654717	69655717	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-56257.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	100.68	119.8	98.05	103.91	83.97	100.47	129.91	131.32	94.93
Merged-chr8-105938104-3	chr8	105937601	105938601	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013640, exon 1 of 8)	5' UTR (NM_013640, exon 1 of 8)	291.0	NM_013640	19171.0	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	144.73	154.36	189.62	93.79	97.03	135.04	167.93	239.65	97.43
Merged-chr19-10859468-3	chr19	10858964	10859964	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133804, intron 10 of 10)	intron (NM_133804, intron 10 of 10)	10315.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	13.73	16.13	20.35	12.14	2.33	17.68	7.39	11.5	18.11
Merged-chr16-92021844-3	chr16	92021336	92022336	+	992.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-36486.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	61.21	31.79	18.5	59.38	51.32	52.25	105.62	104.35	30.6
Merged-chr8-105622652-3	chr8	105622188	105623188	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081241)	TTS (NM_001081241)	7222.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	4.58	11.98	1.85	15.52	10.73	15.27	10.56	13.71	12.49
Merged-chr14-55161498-3	chr14	55160990	55161990	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44555.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	9.72	10.6	0.0	5.4	0.0	5.63	6.34	4.42	6.25
Merged-chr2-118263570-3	chr2	118263092	118264092	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6626.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	90.38	116.58	26.82	73.54	51.78	24.92	55.98	68.54	46.22
Merged-chr2-170218654-3	chr2	170218175	170219175	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76000.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	37.18	46.08	40.7	56.0	30.32	31.35	60.2	60.58	32.48
Merged-chr10-128091633-3	chr10	128091160	128092160	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1123.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	228.82	186.62	180.37	170.03	76.97	111.73	221.8	267.95	166.75
Merged-chr11-70650585-3	chr11	70650100	70651100	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316728, intron 8 of 9)	intron (NM_001316728, intron 8 of 9)	3313.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	26.31	15.67	37.0	20.24	11.66	40.99	28.52	19.9	14.99
Merged-chr15-100622331-3	chr15	100621844	100622844	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033872, intron 3 of 3)	intron (NM_001033872, intron 3 of 3)	6682.0	NM_011873	23994.0	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	84.66	71.88	74.92	85.69	42.45	46.62	64.43	54.83	46.22
Merged-chr17-87459452-3	chr17	87458940	87459940	+	992.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12505.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	6.86	7.37	0.92	12.82	4.2	4.02	8.45	8.4	9.99
Merged-chr10-84576961-2	chr10	84576464	84577464	+	992.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146008)	promoter-TSS (NM_146008)	17.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	195.64	282.46	216.44	232.1	341.48	206.57	333.75	374.07	141.14
Merged-chr11-23768068-3	chr11	23767562	23768562	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	intron (NM_009044, intron 1 of 9)	2908.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	46.91	32.25	18.5	60.05	33.12	44.21	59.15	50.85	40.59
Merged-chr7-107277171-1	chr7	107276671	107277671	+	992.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	67726.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	4.58	4.15	2.77	6.07	4.67	1.61	0.0	2.21	2.5
Merged-chr1-180343052-3	chr1	180342554	180343554	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-12505.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	22.88	23.96	16.65	19.57	7.46	19.29	17.96	14.15	17.49
Merged-chr19-60580261-3	chr19	60579819	60580819	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172097, intron 1 of 6)	intron (NM_001172097, intron 1 of 6)	704.0	NM_001172097	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	204.22	236.84	207.19	237.5	283.64	254.8	280.95	278.57	164.88
Merged-chr7-130903091-3	chr7	130902588	130903588	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 6 of 9)	intron (NM_133942, intron 6 of 9)	-5180.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	72.65	81.56	57.35	84.34	94.7	97.26	74.99	90.64	51.21
Merged-chr11-120581619-3	chr11	120581116	120582116	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133796)	promoter-TSS (NM_133796)	4.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	431.9	302.27	359.81	431.14	284.1	319.91	341.15	279.01	181.74
Merged-chrX-21565537-3	chrX	21565046	21566046	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80922.0	NM_007429	11609.0	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	48.05	57.14	28.67	42.51	36.85	30.54	24.29	33.6	26.23
Merged-chr17-10319318-3	chr17	10318816	10319816	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159517)	promoter-TSS (NM_001159517)	45.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	127.0	111.05	129.49	127.52	78.37	82.79	111.96	69.42	53.71
Merged-chr17-78891219-3	chr17	78890740	78891740	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 4 of 6)	MTE2a|LTR|ERVL-MaLR	-8668.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	23.45	22.58	26.82	37.11	22.39	33.76	44.36	32.28	38.1
Merged-chr8-25973325-3	chr8	25972822	25973822	+	992.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	(TTTTG)n|Simple_repeat|Simple_repeat	3422.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	51.48	52.53	55.5	89.74	51.32	58.68	192.23	198.98	93.05
Merged-chr1-170845923-3	chr1	170845480	170846480	+	992.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 4 of 15)	RMER4B|LTR|ERVK	21791.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	137.29	165.88	117.47	128.2	124.56	134.23	114.07	197.65	101.8
Merged-chr14-55815527-3	chr14	55815028	55816028	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-9267.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	20.59	12.44	1.85	33.06	34.06	24.92	22.18	23.43	5.0
Merged-chr4-40251139-3	chr4	40250627	40251627	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11302.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	8.01	6.91	5.55	10.8	6.53	9.65	7.39	3.54	2.5
Merged-chr5-99906350-3	chr5	99905849	99906849	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	72589.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	10.3	19.35	11.1	16.19	17.73	14.47	41.19	46.43	45.59
Merged-chr6-71980242-3	chr6	71979764	71980764	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009088)	TTS (NM_009088)	62264.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	29.75	11.06	9.25	31.71	26.59	26.53	27.46	21.22	15.61
Merged-chr18-61767909-3	chr18	61767405	61768405	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	18757.0	NM_178928	106877.0	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	5.15	11.98	10.17	8.77	9.33	17.68	8.45	7.07	6.25
Merged-chr2-62645625-3	chr2	62645123	62646123	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027835, exon 1 of 16)	exon (NM_027835, exon 1 of 16)	632.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	210.52	217.95	147.99	215.91	219.26	163.97	212.29	292.27	144.27
Merged-chr17-46074059-3	chr17	46073468	46074468	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37036.0	NM_026768	68565.0	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	12.01	9.68	5.55	33.06	6.53	7.23	16.9	5.31	3.75
Merged-chrX-98880491-3	chrX	98879996	98880996	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313756, intron 2 of 2)	intron (NM_001313756, intron 2 of 2)	10529.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	9.15	11.98	10.17	18.22	6.53	6.43	14.79	10.17	7.49
Merged-chr10-86972148-3	chr10	86971638	86972638	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 6 of 68)	LTR41B|LTR|ERVL	35804.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	24.6	20.74	11.1	24.29	24.26	36.17	39.08	22.55	3.75
Merged-chr9-70833269-3	chr9	70832768	70833768	+	992.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	101540.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	58.35	62.21	56.42	81.64	47.58	77.97	106.67	71.19	48.09
Merged-chr11-110337602-3	chr11	110337077	110338077	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_147219, exon 1 of 39)	5' UTR (NM_147219, exon 1 of 39)	139.0	NM_147219	217265.0	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	14.87	5.99	5.55	10.8	7.46	6.43	13.73	7.07	3.75
Merged-chr7-132653237-3	chr7	132652712	132653712	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	42569.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	9.15	12.9	7.4	10.12	5.13	11.25	1.06	3.54	9.99
Merged-chr15-98504661-3	chr15	98504161	98505161	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	7187.0	NM_001001807	258502.0	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	8.58	3.69	1.85	4.72	2.33	11.25	4.22	0.88	3.12
Merged-chr10-82670433-3	chr10	82669933	82670933	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029102, intron 2 of 9)	intron (NM_029102, intron 2 of 9)	20217.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	8.58	5.07	7.4	5.4	7.93	0.0	2.11	6.63	0.62
Merged-chr11-83595910-3	chr11	83595401	83596401	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 1 of 8)	MLTR14|LTR|ERV1	-2814.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	57.21	46.08	42.55	112.68	51.32	69.13	65.48	53.94	43.72
Merged-chr4-147814703-3	chr4	147814201	147815201	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-4913.0	NM_001127189	100041677.0	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157	zinc finger protein 984	protein-coding	14.87	23.5	14.8	12.14	6.53	16.08	15.84	14.59	7.49
Merged-chr4-89351260-3	chr4	89350754	89351754	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40222.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	16.59	23.04	1.85	35.76	14.93	17.68	12.67	18.57	11.24
Merged-chr10-117944073-3	chr10	117943583	117944583	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	MTC|LTR|ERVL-MaLR	18624.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	20.59	20.74	8.32	16.19	14.0	19.29	44.36	48.2	26.23
Merged-chr11-78115516-3	chr11	78115024	78116024	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20851.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	20.02	10.6	11.1	8.77	4.2	16.88	15.84	12.38	7.49
Merged-chr11-101463102-3	chr11	101462618	101463618	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	3081.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	18.31	13.82	7.4	30.36	11.66	24.11	12.67	21.67	9.99
Merged-chr1-125441873-3	chr1	125441380	125442380	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6153.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	66.36	74.19	109.14	99.18	77.91	90.02	110.9	91.09	104.92
Merged-chr5-109996453-3	chr5	109995953	109996953	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145563)	promoter-TSS (NM_145563)	-74.0	NM_145563	69504.0	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	15.45	5.53	11.1	20.92	17.26	16.88	17.96	17.69	10.62
Merged-chr10-40025314-3	chr10	40024826	40025826	+	992.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144821)	promoter-TSS (NM_144821)	-58.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	10.3	4.15	3.7	1.35	2.33	0.0	6.34	3.1	1.25
Merged-chr9-44571138-3	chr9	44570650	44571650	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33742.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	42.9	25.34	5.55	38.46	24.26	35.37	58.09	58.37	48.71
Merged-chr12-80816619-3	chr12	80816122	80817122	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	26090.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	89.81	92.62	40.7	63.42	41.05	26.53	66.54	72.96	35.6
Merged-chr9-65583257-3	chr9	65582755	65583755	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3168.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	14.3	11.98	7.4	12.14	10.73	6.43	26.4	16.36	9.99
Merged-chr9-74871488-3	chr9	74870984	74871984	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008262, intron 1 of 1)	intron (NM_008262, intron 1 of 1)	9563.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	5.72	3.23	9.25	5.4	1.4	9.65	8.45	6.63	5.0
Merged-chr6-115555795-3	chr6	115555274	115556274	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199033, intron 4 of 11)	intron (NM_199033, intron 4 of 11)	11070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	17.73	13.82	2.77	44.53	31.72	16.08	12.67	14.15	19.98
Merged-chr3-149380284-3	chr3	149379780	149380780	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	8.58	10.6	12.95	13.49	8.4	10.45	10.56	5.75	14.99
Merged-chr1-131526548-3	chr1	131526020	131527020	+	992.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 1 of 22)	CpG	841.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	101.83	85.71	130.42	82.99	70.91	131.82	90.83	102.14	105.55
Merged-chr8-69791254-3	chr8	69790733	69791733	+	992.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133224)	promoter-TSS (NM_133224)	70.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	108.12	103.22	219.21	60.05	75.57	136.64	120.41	103.91	101.17
Merged-chr2-140671535-3	chr2	140671045	140672045	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178382)	promoter-TSS (NM_178382)	-69.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	3.43	1.84	0.0	5.4	1.4	0.0	9.51	4.86	1.87
Merged-chr13-113600141-3	chr13	113599624	113600624	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	18440.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	93.24	47.46	35.15	126.85	68.58	41.8	79.21	76.94	16.86
Merged-chr9-115487363-3	chr9	115486858	115487858	+	992.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	105539.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	24.6	21.66	14.8	22.27	18.66	12.86	61.26	54.39	31.85
Merged-chr18-25679409-2	chr18	25678859	25679859	+	992.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146295, exon 2 of 2)	exon (NM_001146295, exon 2 of 2)	389.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	28.03	18.43	16.65	11.47	9.33	4.82	3.17	0.0	3.75
Merged-chrX-163822500-2	chrX	163822011	163823011	+	992.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-61179.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	13.16	9.22	10.17	12.82	7.93	20.9	21.12	12.82	10.62
Merged-chr10-91270606-4	chr10	91270087	91271087	+	992.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49968.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	19.45	12.9	20.35	33.74	27.52	36.97	35.91	42.01	14.99
Merged-chr1-135368380-3	chr1	135367869	135368869	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053106)	TTS (NM_053106)	6694.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	8.01	8.75	0.0	7.42	2.8	4.82	8.45	4.42	1.25
Merged-chr2-69613495-3	chr2	69612997	69613997	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27430.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	10.87	8.75	2.77	1.35	3.73	12.06	4.22	7.07	9.99
Merged-chr4-58506957-3	chr4	58506462	58507462	+	992.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-7559.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	34.9	43.77	52.72	31.71	22.86	35.37	49.64	38.03	32.48
Merged-chr2-174330376-2	chr2	174329876	174330876	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001310083, exon 2 of 13)	exon (NM_001310083, exon 2 of 13)	287.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	317.49	287.99	300.61	317.79	228.12	228.28	328.47	225.06	205.47
Merged-chr18-79759058-3	chr18	79758556	79759556	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-287839.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	14.3	15.67	15.72	20.24	12.6	16.08	19.01	13.27	14.99
Merged-chr4-103282447-2	chr4	103281957	103282957	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163494, intron 1 of 7)	RLTR22_Mur|LTR|ERVK	8406.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	53.77	52.99	65.67	35.76	43.85	51.44	7.39	1.77	3.75
Merged-chr1-172501157-3	chr1	172500672	172501672	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178598, intron 1 of 4)	intron (NM_178598, intron 1 of 4)	926.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	115.55	73.73	18.5	137.64	65.78	52.25	140.47	138.84	70.57
Merged-chr5-44050371-3	chr5	44049866	44050866	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	44402.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	43.48	37.32	13.87	16.87	10.26	5.63	45.42	50.41	13.74
Merged-chr5-20967992-3	chr5	20967476	20968476	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16154.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	16.59	24.42	31.45	16.19	14.93	23.31	38.02	36.7	14.36
Merged-chr12-21368622-2	chr12	21368189	21369189	+	992.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	4943.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	58.35	53.91	48.1	62.07	45.25	68.32	292.56	334.28	156.76
Merged-chr15-93270452-3	chr15	93269952	93270952	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	4727.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	37.18	48.38	30.52	33.06	26.59	42.6	39.08	29.63	28.73
Merged-chr1-84199113-3	chr1	84198606	84199606	+	992.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	19855.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	21.74	31.79	23.12	16.19	25.66	13.66	21.12	23.43	6.25
Merged-chr4-120872571-1	chr4	120872071	120873071	+	992.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_182929, exon 2 of 8)	5' UTR (NM_182929, exon 2 of 8)	17772.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	9.72	9.22	12.02	14.84	13.53	15.27	10.56	5.31	3.75
Merged-chr9-55308704-3	chr9	55308212	55309212	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18201.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	36.04	36.86	34.22	58.7	67.18	129.41	26.4	27.41	25.61
Merged-chr3-8916496-3	chr3	8916010	8917010	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025434, intron 1 of 2)	intron (NM_025434, intron 1 of 2)	7347.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	4.0	1.84	0.0	3.37	2.33	8.04	2.11	3.54	3.75
Merged-chr13-41432499-3	chr13	41432002	41433002	+	991.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	54858.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	27.46	26.26	28.67	29.69	24.72	27.33	21.12	17.24	14.36
Merged-chr11-53783919-3	chr11	53783430	53784430	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13457.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	119.56	105.06	55.5	88.39	55.51	99.67	145.75	170.68	111.17
Merged-chr1-7397038-3	chr1	7396523	7397523	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	308103.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	60.64	67.27	37.0	71.52	33.59	63.5	115.12	109.66	64.95
Merged-chr4-155559658-3	chr4	155559135	155560135	+	991.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001160017)	TTS (NM_001160017)	-2746.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	22.88	32.72	35.15	21.59	20.53	31.35	41.19	34.05	30.6
Merged-chr19-45161287-3	chr19	45160798	45161798	+	991.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10583.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.0	2.76	3.7	4.05	2.33	0.0	6.34	4.42	4.37
Merged-chr6-108517784-3	chr6	108517300	108518300	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 57 of 61)	intron (NM_010585, intron 57 of 61)	28057.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	13.73	8.29	5.55	12.14	5.13	10.45	9.51	4.86	6.25
Merged-chr2-36271309-3	chr2	36270794	36271794	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40868.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	37.18	16.13	10.17	20.24	16.79	13.66	16.9	11.94	6.87
Merged-chr4-45013228-3	chr4	45012732	45013732	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-820.0	NM_173399	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	236.26	268.18	146.14	211.86	195.93	141.47	200.68	231.7	174.24
Merged-chr3-37073435-1	chr3	37072935	37073935	+	991.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009350, intron 5 of 11)	L1_Mus3|LINE|L1	9779.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	1.14	4.61	5.55	0.67	1.87	1.61	3.17	1.33	5.0
Merged-chr4-19872999-3	chr4	19872505	19873505	+	991.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49561.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	125.85	159.43	98.97	151.81	213.66	150.31	136.25	170.23	89.93
Merged-chr8-126474952-3	chr8	126474363	126475363	+	991.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159907, exon 1 of 30)	exon (NM_001159907, exon 1 of 30)	202.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	38.9	19.35	18.5	37.78	26.12	45.82	30.63	15.03	21.86
Merged-chr5-32139037-3	chr5	32138554	32139554	+	991.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	2582.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	179.05	202.75	169.27	143.71	150.68	137.45	191.17	206.05	184.24
Merged-chr13-117242261-3	chr13	117241768	117242768	+	991.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	21695.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.29	3.23	5.55	6.07	9.33	1.61	9.51	4.86	4.37
Merged-chr15-85113660-3	chr15	85113149	85114149	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 9 of 24)	intron (NM_080470, intron 9 of 24)	18308.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	17.16	22.12	17.57	12.14	16.79	12.86	30.63	36.26	18.11
Merged-chr14-9393594-3	chr14	9393100	9394100	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-490495.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	9.72	8.29	3.7	6.75	5.13	12.06	5.28	3.98	6.25
Merged-chr4-114947583-3	chr4	114947085	114948085	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21572.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	2.86	4.61	4.62	4.05	1.4	8.04	2.11	1.33	0.0
Merged-chr7-80091615-3	chr7	80091118	80092118	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-16361.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	47.48	32.72	45.32	29.01	18.66	34.56	30.63	22.11	36.85
Merged-chr13-110601522-3	chr13	110601024	110602024	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206480.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	96.11	102.29	47.17	185.55	138.55	77.97	139.42	139.72	44.34
Merged-chr11-23696051-3	chr11	23695554	23696554	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	30078.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	57.21	68.2	65.67	39.13	54.58	83.59	85.55	74.73	73.07
Merged-chr11-23971203-3	chr11	23970709	23971709	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75939.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	9.15	6.91	3.7	5.4	7.93	8.04	2.11	2.21	9.37
Merged-chr12-100520961-3	chr12	100520455	100521455	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033213)	promoter-TSS (NM_001033213)	-133.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	21.74	24.88	24.05	35.09	23.79	20.9	29.57	19.01	4.37
Merged-chr2-157156337-3	chr2	157155832	157156832	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 19 of 21)	CT-rich|Low_complexity|Low_complexity	-21110.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	28.6	28.57	24.97	23.62	17.73	45.82	25.35	26.09	23.73
Merged-chr1-34484618-3	chr1	34484102	34485102	+	991.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-13810.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	90.38	91.7	61.97	118.75	97.03	69.93	143.64	222.85	92.43
Merged-chr11-45750490-3	chr11	45750042	45751042	+	991.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57541.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	16.59	17.51	16.65	24.29	13.53	16.08	17.96	24.32	30.6
Merged-chr2-165493303-3	chr2	165492814	165493814	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007581)	promoter-TSS (NM_001007581)	0.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	35.47	30.87	42.55	19.57	24.26	42.6	31.69	35.37	24.36
Merged-chr1-65010341-3	chr1	65009849	65010849	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22410.0	NM_001310617	70861.0	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	5.15	4.61	5.55	6.07	0.93	3.22	1.06	1.77	5.62
Merged-chr11-55463159-3	chr11	55462666	55463666	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1958.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	29.17	29.49	39.77	50.6	27.06	57.87	35.91	40.68	46.84
Merged-chr4-135948384-3	chr4	135947869	135948869	+	991.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	963.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	54.35	39.17	39.77	70.17	59.71	55.46	59.15	56.16	23.11
Merged-chr6-108327825-3	chr6	108327323	108328323	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	114727.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	24.03	13.82	12.95	26.31	27.06	15.27	13.73	8.4	6.25
Merged-chr19-60819325-1	chr19	60818825	60819825	+	991.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	7770.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	85.81	103.22	59.2	95.14	75.57	79.58	105.62	136.63	99.92
Merged-chr14-25461542-3	chr14	25461018	25462018	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2333.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	180.77	139.16	128.57	190.95	158.61	172.01	128.85	115.85	53.08
Merged-chr11-62613886-3	chr11	62613367	62614367	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357955, intron 2 of 3)	intron (NM_001357955, intron 2 of 3)	9337.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	6.29	1.84	0.0	4.05	0.47	6.43	3.17	0.88	1.25
Merged-chr6-136809871-3	chr6	136809368	136810368	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177688, exon 1 of 1)	3' UTR (NM_177688, exon 1 of 1)	1620.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	109.26	111.51	96.2	117.4	106.83	90.02	107.73	133.09	72.45
Merged-chr10-76962069-3	chr10	76961567	76962567	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-120.0	NM_021568	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	4.0	1.38	4.62	10.12	6.53	3.22	6.34	0.0	3.75
Merged-chr14-27335973-3	chr14	27335427	27336427	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289687)	promoter-TSS (NM_001289687)	-110.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	49.2	47.92	35.15	63.42	53.65	49.03	78.16	58.37	27.48
Merged-chr5-65326351-3	chr5	65325855	65326855	+	991.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	9284.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	88.67	65.89	49.95	90.41	65.78	38.58	120.41	136.19	43.72
Merged-chr15-50157177-2	chr15	50156665	50157665	+	991.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	731884.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.86	3.69	1.85	0.67	1.87	1.61	4.22	6.63	5.0
Merged-chr11-94381090-2	chr11	94380615	94381615	+	991.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11861.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	8.58	12.44	16.65	60.72	36.85	64.3	51.75	52.18	33.1
Merged-chr8-119844837-3	chr8	119844333	119845333	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4254.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	24.03	10.6	0.0	16.87	10.26	2.41	13.73	6.19	3.12
Merged-chrX-36803353-3	chrX	36802845	36803845	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7748.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	33.75	29.95	49.02	19.57	19.59	32.96	20.07	31.84	45.59
Merged-chr1-43507973-3	chr1	43507479	43508479	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	URR1B|DNA|hAT-Charlie	62228.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	47.48	43.77	36.07	49.93	31.26	42.6	83.44	76.94	48.09
Merged-chr4-150076406-3	chr4	150075888	150076888	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	7934.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	20.59	13.36	11.1	40.48	38.72	28.94	21.12	27.41	13.74
Merged-chr17-46904021-3	chr17	46903542	46904542	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6443.0	NM_008938	19133.0	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	13.16	5.53	5.55	6.75	7.93	5.63	15.84	10.61	0.0
Merged-chr17-47688992-3	chr17	47688547	47689547	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025365)	promoter-TSS (NM_025365)	-661.0	NM_001164729	66119.0	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6	protein-coding	38.9	23.5	19.42	31.04	28.46	20.9	23.24	26.09	9.37
Merged-chr4-33073177-3	chr4	33072683	33073683	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008076, intron 2 of 8)	B2_Mm2|SINE|B2	10071.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	5.72	5.53	14.8	3.37	1.87	3.22	9.51	5.31	10.62
Merged-chr10-14130377-3	chr10	14129882	14130882	+	991.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164003.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	33.75	23.96	18.5	18.22	15.86	43.4	27.46	21.67	26.85
Merged-chr9-105034163-3	chr9	105033664	105034664	+	991.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19104.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	35.47	77.41	25.9	49.25	54.11	60.28	22.18	22.55	36.85
Merged-chr14-50838635-2	chr14	50838136	50839136	+	991.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009351, exon 35 of 55)	exon (NM_009351, exon 35 of 55)	30720.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	122.99	110.13	88.8	91.76	97.97	86.01	140.47	169.35	111.79
Merged-chr1-183804004-3	chr1	183803499	183804499	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55022.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	60.07	31.79	17.57	64.1	27.52	8.04	47.53	34.49	12.49
Merged-chr6-34906930-3	chr6	34906418	34907418	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013366, intron 3 of 14)	intron (NM_001013366, intron 3 of 14)	3913.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	81.23	55.29	34.22	136.29	77.44	64.3	55.98	37.14	22.48
Merged-chr9-92250562-3	chr9	92250021	92251021	+	991.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 1 of 8)	CpG	327.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	70.36	62.21	35.15	89.74	110.1	69.13	31.69	28.74	8.12
Merged-chr8-90965786-5	chr8	90965286	90966286	+	991.542847	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 4 of 39)	PB1D10|SINE|Alu	33537.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	157.31	219.79	89.72	97.83	115.69	103.69	130.97	143.26	88.68
Merged-chr6-83502425-3	chr6	83501950	83502950	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	4519.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	144.73	121.65	124.87	136.29	113.36	111.73	110.9	146.8	83.69
Merged-chr7-74908507-3	chr7	74908000	74909000	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121711.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	12.01	18.89	3.7	15.52	6.53	14.47	7.39	10.61	11.87
Merged-chr7-99089115-3	chr7	99088607	99089607	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	52037.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	60.07	39.17	39.77	56.68	36.85	39.39	54.92	45.54	33.1
Merged-chr6-143130619-3	chr6	143130131	143131131	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	RMER6C|LTR|ERVK	23300.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	23.45	12.9	0.0	14.17	5.6	5.63	15.84	7.07	5.62
Merged-chr19-41346649-3	chr19	41346151	41347151	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	38419.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	208.8	177.86	165.57	147.76	126.89	154.33	228.14	225.51	143.02
Merged-chr18-3507330-2	chr18	3506828	3507828	+	991.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026505)	promoter-TSS (NM_026505)	-629.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	9.72	5.07	4.62	8.77	7.93	8.04	16.9	9.29	7.49
Merged-chr13-80933106-3	chr13	80932599	80933599	+	991.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7304.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	43.48	55.75	51.8	54.65	32.66	72.34	83.44	64.56	32.48
Merged-chr14-54518745-3	chr14	54518238	54519238	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1268.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	16.59	7.37	5.55	12.82	8.86	12.06	16.9	7.07	6.25
Merged-chr5-19656171-3	chr5	19655671	19656671	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	-251347.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	10.3	15.21	1.85	24.96	18.66	19.29	36.97	32.72	13.74
Merged-chr14-103071143-3	chr14	103070636	103071636	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033242, intron 1 of 3)	intron (NM_001033242, intron 1 of 3)	920.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	71.51	82.02	63.82	92.44	110.56	64.3	104.56	151.22	57.46
Merged-chr3-83843778-3	chr3	83843285	83844285	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	74.37	85.71	42.55	120.1	74.17	93.24	81.33	110.54	53.08
Merged-chr14-30574378-3	chr14	30573867	30574867	+	991.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009388, exon 14 of 14)	3' UTR (NM_009388, exon 14 of 14)	2218.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	7.44	5.99	5.55	9.45	10.73	11.25	17.96	14.15	13.12
Merged-chr17-26504262-5	chr17	26503730	26504730	+	991.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4242.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	276.87	304.58	139.67	208.49	257.05	194.52	140.47	185.71	166.75
Merged-chr12-79297310-3	chr12	79296826	79297826	+	991.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252562)	promoter-TSS (NM_001252562)	-25.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	44.62	102.29	48.1	103.23	119.43	73.14	141.53	156.09	46.22
Merged-chr17-46650481-3	chr17	46649978	46650978	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001316742)	TTS (NM_001316742)	140.0	NM_025611	66515.0	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	32.61	23.96	37.92	22.27	17.26	53.85	22.18	26.97	26.23
Merged-chr6-134635444-3	chr6	134634948	134635948	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	25.74	27.65	32.37	29.01	15.39	47.42	17.96	15.92	29.98
Merged-chr7-118740176-3	chr7	118739677	118740677	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027815)	promoter-TSS (NM_027815)	-94.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	117.84	102.29	57.35	78.27	50.38	72.34	85.55	64.11	58.08
Merged-chr4-32055348-3	chr4	32054836	32055836	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91229.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	18.31	21.66	12.95	29.69	27.06	16.08	30.63	20.34	8.12
Merged-chr4-140572581-3	chr4	140572098	140573098	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112723, intron 14 of 26)	intron (NM_001112723, intron 14 of 26)	76158.0	NM_001112723	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	9.72	5.53	4.62	7.42	2.8	1.61	5.28	1.33	1.87
Merged-chr1-16671276-3	chr1	16670793	16671793	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	B2_Mm2|SINE|B2	6102.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	25.17	47.46	48.1	24.96	17.73	22.51	51.75	40.68	24.36
Merged-chr6-89277780-3	chr6	89277291	89278291	+	991.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	7934.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	30.89	45.16	38.85	60.05	61.58	48.23	48.58	43.33	31.23
Merged-chr14-54641655-5	chr14	54641161	54642161	+	991.3583369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199470)	promoter-TSS (NM_199470)	-297.0	NM_199470	239096.0	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik	cadherin-like 24	protein-coding	10.3	4.61	0.92	7.42	4.2	6.43	4.22	2.21	3.75
Merged-chr14-30715174-3	chr14	30714692	30715692	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166532)	promoter-TSS (NM_001166532)	25.0	NM_001166531	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	93.24	49.76	41.62	124.15	70.91	42.6	70.76	51.29	20.61
Merged-chr6-120172431-3	chr6	120171919	120172919	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	MLT1F|LTR|ERVL-MaLR	-21404.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	24.03	17.51	12.02	67.47	38.72	38.58	16.9	10.61	8.12
Merged-chr11-82612205-3	chr11	82611697	82612697	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21156.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	1.72	2.3	0.0	3.37	3.73	1.61	1.06	1.77	5.0
Merged-chr10-68276991-3	chr10	68276465	68277465	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	(TG)n|Simple_repeat|Simple_repeat	1761.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	279.73	250.21	216.44	259.77	193.13	189.69	316.86	318.36	214.84
Merged-chr13-94050248-3	chr13	94049731	94050731	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7565.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	1.72	7.37	5.55	6.75	5.6	8.04	6.34	5.75	8.12
Merged-chr11-121697728-1	chr11	121697228	121698228	+	991.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4699.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	10.87	2.3	12.95	8.1	3.27	22.51	5.28	1.33	3.75
Merged-chr2-122163936-3	chr2	122163441	122164441	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	3241.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	167.61	151.6	105.44	179.47	176.34	148.7	162.65	224.18	118.04
Merged-chr19-53464847-3	chr19	53464347	53465347	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028427)	promoter-TSS (NR_028427)	-51.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	31.46	18.43	19.42	58.03	47.12	76.36	7.39	2.21	5.62
Merged-chr3-32403290-3	chr3	32402792	32403792	+	991.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32859.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	46.34	60.82	53.65	41.83	44.78	58.68	46.47	40.68	27.48
Merged-chr1-170885112-1	chr1	170884612	170885612	+	991.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001356485, exon 1 of 5)	exon (NM_001356485, exon 1 of 5)	428.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	43.48	55.29	56.42	60.05	64.38	45.01	61.26	42.89	18.74
Merged-chr2-25607971-3	chr2	25607464	25608464	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029859)	TTS (NM_029859)	482.0	NM_001024616	227624.0	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	233.4	255.27	200.71	231.43	271.51	235.51	254.54	243.63	134.9
Merged-chr2-48695575-3	chr2	48695084	48696084	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118525.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	10.3	14.75	4.62	14.17	5.6	9.65	9.51	11.05	6.87
Merged-chr6-88069980-3	chr6	88069493	88070493	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14480.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	28.6	13.82	9.25	16.19	14.0	8.04	23.24	19.9	18.11
Merged-chr18-53770320-3	chr18	53769824	53770824	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25777.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	11.44	19.81	22.2	16.87	22.39	17.68	16.9	22.55	26.85
Merged-chr2-73485657-3	chr2	73485117	73486117	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	136.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	156.17	137.77	132.27	151.14	157.21	131.02	182.72	195.44	91.81
Merged-chr11-29495902-3	chr11	29495397	29496397	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 25 of 31)	intron (NM_176841, intron 25 of 31)	19136.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	32.04	30.41	26.82	43.86	29.39	39.39	20.07	19.01	24.98
Merged-chr10-128091131-3	chr10	128090636	128091636	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016774)	TTS (NM_016774)	-1647.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	195.07	141.46	98.97	128.2	63.91	94.85	165.82	190.57	134.9
Merged-chr2-52500083-3	chr2	52499588	52500588	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	58523.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	40.04	23.5	30.52	18.89	16.33	24.92	14.79	12.82	13.74
Merged-chr8-83657024-3	chr8	83656535	83657535	+	991.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	L2|LINE|L2	4357.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	21.74	17.51	22.2	16.19	15.39	30.54	28.52	27.41	43.09
Merged-chr9-55388320-2	chr9	55387800	55388800	+	991.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	61387.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	9.72	3.69	8.32	9.45	4.2	1.61	3.17	5.75	1.25
Merged-chr13-116000296-2	chr13	115999793	116000793	+	991.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	309395.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	2.29	0.46	0.0	26.31	13.06	14.47	15.84	11.94	7.49
Merged-chr6-116073122-3	chr6	116072622	116073622	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-78117.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	121.85	117.04	72.15	137.64	99.37	90.02	95.06	54.39	34.97
Merged-chr7-120754852-3	chr7	120754370	120755370	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177697, intron 3 of 33)	B1_Mus2|SINE|Alu	15313.0	NM_177697	233813.0	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.0	0.46	0.0	0.67	0.93	0.0	0.0	0.88	3.12
Merged-chr4-16013326-3	chr4	16012820	16013820	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355616, intron 1 of 5)	intron (NM_001355616, intron 1 of 5)	518.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	101.25	108.75	74.92	120.77	162.34	86.01	101.39	91.53	55.58
Merged-chr2-151533822-3	chr2	151533318	151534318	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-8665.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	11.44	4.61	3.7	8.77	3.27	12.86	10.56	7.07	6.87
Merged-chr9-94668862-3	chr9	94668380	94669380	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	38.33	43.77	44.4	25.64	31.26	41.8	16.9	14.15	25.61
Merged-chr14-51166276-3	chr14	51165736	51166736	+	991.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3976.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	33.75	29.95	37.92	16.87	27.99	25.72	31.69	23.88	49.96
Merged-chr8-82403220-3	chr8	82402713	82403713	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254747)	promoter-TSS (NM_001254747)	-627.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	94.39	131.32	99.89	90.41	117.56	130.21	122.52	168.47	119.28
Merged-chr8-25099688-3	chr8	25099196	25100196	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	2115.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	98.97	156.21	97.12	99.18	88.64	109.32	122.52	110.98	97.43
Merged-chr15-8635613-3	chr15	8635129	8636129	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75178.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	286.03	316.56	170.19	242.9	197.33	164.78	348.54	444.38	167.37
Merged-chr7-126780156-3	chr7	126779688	126780688	+	991.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026875, exon 5 of 5)	3' UTR (NM_026875, exon 5 of 5)	-1295.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	28.03	20.27	27.75	45.88	23.79	19.29	27.46	24.32	18.11
Merged-chr16-37869787-3	chr16	37869253	37870253	+	991.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	1353.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	78.37	104.6	61.05	67.47	67.18	68.32	66.54	95.51	63.08
Merged-chr12-3843643-3	chr12	3843116	3844116	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	18628.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	34.9	18.43	17.57	33.06	13.06	33.76	29.57	21.22	18.11
Merged-chr3-90267289-3	chr3	90266789	90267789	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201407, intron 1 of 27)	intron (NM_201407, intron 1 of 27)	775.0	NM_201407	229541.0	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	267.15	290.75	126.72	203.76	199.67	127.8	204.9	279.01	111.79
Merged-chr10-79555098-3	chr10	79554593	79555593	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027422)	promoter-TSS (NM_027422)	35.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	16.02	11.98	9.25	22.27	13.06	20.9	22.18	8.84	20.61
Merged-chr13-51639049-3	chr13	51638497	51639497	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-6235.0	NM_025415	66197.0	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	25.74	30.41	25.9	12.82	14.93	45.82	19.01	24.76	22.48
Merged-chr7-35683989-3	chr7	35683487	35684487	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36505.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	6.86	12.9	12.95	14.84	13.53	6.43	3.17	2.65	13.74
Merged-chr5-62761455-3	chr5	62760977	62761977	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	4700.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	67.5	77.87	61.05	99.18	54.11	71.54	84.49	84.9	61.2
Merged-chr9-77921115-3	chr9	77920617	77921617	+	991.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	3752.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	11.44	11.52	7.4	5.4	2.8	4.82	14.79	7.52	8.74
Merged-chr13-33935801-4	chr13	33935278	33936278	+	991.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040707)	promoter-TSS (NR_040707)	-254.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	121.85	160.81	141.52	192.97	195.47	183.26	302.07	343.56	173.62
Merged-chr5-96854660-2	chr5	96854165	96855165	+	991.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61280.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.15	11.06	5.55	10.8	6.06	19.29	10.56	2.21	5.0
Merged-chr15-99724580-3	chr15	99724120	99725120	+	991.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183256)	promoter-TSS (NM_183256)	-146.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	197.93	188.92	145.22	199.04	129.22	155.93	215.46	244.52	127.4
Merged-chr2-6451404-3	chr2	6450898	6451898	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98662.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	22.31	13.82	11.1	28.34	14.46	21.7	29.57	16.8	14.99
Merged-chr6-91705749-3	chr6	91705255	91706255	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	21688.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	104.69	77.41	100.82	78.27	38.25	38.58	98.23	87.55	64.33
Merged-chr10-26792006-3	chr10	26791506	26792506	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	19494.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	34.9	57.6	51.8	48.58	39.65	39.39	43.3	30.07	24.36
Merged-chr3-107038329-3	chr3	107037811	107038811	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008418)	TTS (NM_008418)	-1193.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	2.29	8.29	1.85	20.92	8.4	4.82	6.34	2.65	3.75
Merged-chr7-19361948-3	chr7	19361464	19362464	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	748.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	65.21	35.94	28.67	38.46	33.12	26.53	32.74	56.16	24.36
Merged-chr10-94464967-3	chr10	94464473	94465473	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	ID_B1|SINE|B4	-49884.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	66.36	43.77	50.87	74.22	73.24	60.28	31.69	47.31	33.1
Merged-chr8-104570617-3	chr8	104570124	104571124	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_001024606	382051.0	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	17.73	16.59	12.02	26.31	14.46	20.09	29.57	22.99	8.12
Merged-chr7-59163427-3	chr7	59162926	59163926	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65324.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	14.87	24.88	26.82	16.19	29.86	24.92	25.35	33.6	20.61
Merged-chr15-6087396-3	chr15	6086898	6087898	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-42694.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	4.58	10.6	7.4	6.75	3.27	3.22	1.06	7.52	2.5
Merged-chr15-103361533-3	chr15	103361018	103362018	+	991.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	5273.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	22.31	18.43	13.87	6.75	10.26	16.88	6.34	3.1	5.0
Merged-chr7-100176494-3	chr7	100175996	100176996	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190869)	promoter-TSS (NM_001190869)	-174.0	NM_001190869	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	10.3	4.61	2.77	8.1	5.6	2.41	7.39	5.75	6.25
Merged-chr8-106936137-2	chr8	106935629	106936629	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009229, exon 1 of 7)	exon (NM_009229, exon 1 of 7)	379.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	100.11	85.25	114.69	113.35	101.7	99.67	89.78	55.27	55.58
Merged-chr2-133552208-3	chr2	133551715	133552715	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007553)	promoter-TSS (NM_007553)	56.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	22.88	9.22	0.0	48.58	28.92	51.44	31.69	7.52	3.75
Merged-chr7-139248746-1	chr7	139248246	139249246	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	CpG	264.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	332.94	303.66	234.94	319.82	348.02	205.77	390.79	301.12	179.24
Merged-chr3-79842321-3	chr3	79841835	79842835	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027495, intron 1 of 11)	intron (NM_027495, intron 1 of 11)	327.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	145.3	177.86	61.05	149.79	196.4	74.75	162.65	230.81	75.57
Merged-chr4-137048778-3	chr4	137048252	137049252	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-57.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	101.83	83.86	77.7	45.88	47.12	58.68	82.38	42.89	54.33
Merged-chr10-20723686-1	chr10	20723186	20724186	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1392.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	62.35	71.88	37.92	91.76	47.58	55.46	98.23	87.55	45.59
Merged-chr11-44390222-4	chr11	44389785	44390785	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9778.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	21.74	9.68	9.25	22.27	9.33	9.65	9.51	13.71	8.74
Merged-chr9-111563471-3	chr9	111562954	111563954	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	intron (NM_016853, intron 10 of 10)	124373.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	31.46	25.34	23.12	29.69	21.46	61.09	42.25	35.37	32.48
Merged-chr5-3430698-3	chr5	3430214	3431214	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	86821.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	29.75	39.63	19.42	63.42	47.12	32.96	70.76	59.25	21.86
Merged-chr4-15989047-1	chr4	15988547	15989547	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013752, exon 14 of 16)	exon (NM_013752, exon 14 of 16)	24791.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	6.86	7.83	15.72	10.8	5.13	15.27	4.22	8.84	6.87
Merged-chr3-153262882-3	chr3	153262359	153263359	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	MTEa|LTR|ERVL-MaLR	35790.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	50.34	38.71	50.87	53.3	25.19	48.23	53.87	62.35	38.1
Merged-chr10-67960165-1	chr10	67959665	67960665	+	991.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0-int|LTR|ERVL-MaLR	13543.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	2.29	2.3	0.0	0.0	3.27	0.8	1.06	6.63	9.37
Merged-chr8-40512626-1	chr8	40512126	40513126	+	991.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011135)	promoter-TSS (NM_011135)	843.0	NM_033560	52348.0	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	192.78	194.45	78.62	173.4	181.47	102.08	127.8	163.16	71.82
Merged-chr7-72306556-2	chr7	72306063	72307063	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024703)	promoter-TSS (NM_001024703)	32.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	21.17	17.97	18.5	29.01	8.4	25.72	5.28	2.65	3.75
Merged-chr5-36515353-3	chr5	36514837	36515837	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	15286.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	49.77	53.91	54.57	59.38	31.26	56.27	34.85	34.93	21.86
Merged-chr10-79669144-4	chr10	79668666	79669666	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148934)	promoter-TSS (NM_148934)	-244.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	57.78	75.57	79.55	58.7	48.52	66.71	84.49	69.42	54.96
Merged-chr18-46184909-3	chr18	46184415	46185415	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 4 of 9)	MTD|LTR|ERVL-MaLR	13903.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	17.73	23.96	36.07	17.54	14.46	24.92	23.24	12.82	38.1
Merged-chr14-57798707-2	chr14	57798209	57799209	+	991.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_037238)	TTS (NR_037238)	285.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	185.92	125.33	147.99	171.38	130.16	175.23	167.93	98.6	99.92
Merged-chr4-139193862-3	chr4	139193378	139194378	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271405)	promoter-TSS (NM_001271405)	-233.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	192.21	205.97	209.04	143.04	105.43	173.62	216.52	200.3	182.36
Merged-chr15-82898926-3	chr15	82898423	82899423	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027799)	promoter-TSS (NR_027799)	-157.0	NR_045068	100504637.0	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	93.24	92.16	102.67	62.75	61.58	77.16	94.0	70.3	59.95
Merged-chr1-151338418-3	chr1	151337915	151338915	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6071.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	31.46	39.63	21.27	33.06	38.72	42.6	25.35	36.26	32.48
Merged-chr6-83475700-3	chr6	83475181	83476181	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19289.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	27.46	14.75	24.05	20.92	11.66	16.08	17.96	9.73	16.24
Merged-chr9-104408724-3	chr9	104408248	104409248	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17365.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	129.28	123.49	76.77	127.52	90.04	90.83	95.06	114.08	42.47
Merged-chr14-50865152-3	chr14	50864670	50865670	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 4 of 54)	intron (NM_009351, intron 4 of 54)	5384.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	23.45	28.57	34.22	26.99	28.92	32.96	36.97	34.49	31.23
Merged-chr13-102906083-3	chr13	102905617	102906617	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	145862.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	41.19	32.25	28.67	34.41	28.46	21.7	54.92	43.33	16.86
Merged-chr7-73527417-3	chr7	73526931	73527931	+	990.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	14315.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	71.51	101.37	76.77	56.0	59.71	57.07	59.15	81.8	72.45
Merged-chr5-100639137-3	chr5	100638624	100639624	+	990.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35132.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	58.35	57.6	58.27	39.81	21.93	55.46	67.6	47.75	40.59
Merged-chr1-78702538-2	chr1	78702031	78703031	+	990.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033606, intron 12 of 14)	RMER15|LTR|ERVL	44091.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	51.48	49.76	32.37	75.57	47.58	70.73	7.39	4.42	7.49
Merged-chr5-32112717-2	chr5	32112218	32113218	+	990.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23754.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.44	5.99	5.55	8.1	7.46	12.86	20.07	12.38	22.48
Merged-chr4-141676663-2	chr4	141676110	141677110	+	990.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9106.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	48.05	27.65	23.12	68.82	41.05	32.96	70.76	55.27	34.97
Merged-chr14-33175325-3	chr14	33174841	33175841	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	9725.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	24.6	41.01	42.55	28.34	24.26	36.97	19.01	28.74	26.23
Merged-chr3-95283041-3	chr3	95282540	95283540	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173347)	promoter-TSS (NM_173347)	105.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	113.84	118.88	115.62	172.73	214.59	197.73	145.75	168.02	100.55
Merged-chr13-47193893-3	chr13	47193392	47194392	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170643)	promoter-TSS (NM_001170643)	-111.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	40.04	50.23	46.25	45.88	56.45	64.3	41.19	46.87	21.23
Merged-chr4-141643712-3	chr4	141643209	141644209	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	-19875.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	113.84	115.66	87.87	106.61	90.97	70.73	132.02	191.9	55.58
Merged-chr7-98716201-3	chr7	98715696	98716696	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028410, exon 5 of 5)	exon (NM_028410, exon 5 of 5)	12949.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	31.46	24.88	21.27	79.62	63.45	43.4	48.58	53.06	19.98
Merged-chr9-106310053-3	chr9	106309557	106310557	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	28996.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	49.2	55.29	47.17	55.33	46.65	57.07	30.63	37.58	34.97
Merged-chr1-182378592-3	chr1	182378087	182379087	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30580.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	9.15	5.99	9.25	6.75	7.46	4.82	10.56	9.73	4.37
Merged-chr7-139131677-3	chr7	139131138	139132138	+	990.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	45637.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	8.58	3.69	0.0	4.72	4.2	7.23	4.22	1.77	6.25
Merged-chr15-53474334-3	chr15	53473823	53474823	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128140.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	27.46	29.49	23.12	21.59	19.59	29.74	17.96	21.67	24.36
Merged-chr11-45699042-3	chr11	45698544	45699544	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A2|LTR|ERVL	-109039.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	54.92	63.59	53.65	48.58	43.39	73.95	48.58	45.99	34.97
Merged-chr10-59266276-3	chr10	59265788	59266788	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	44366.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	132.72	143.76	99.89	131.57	115.23	101.28	177.44	174.21	89.31
Merged-chr12-3745622-3	chr12	3745125	3746125	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61355.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	45.19	51.61	61.05	65.45	45.72	53.05	49.64	68.54	26.23
Merged-chr1-33878354-3	chr1	33877842	33878842	+	990.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310484, exon 2 of 6)	exon (NM_001310484, exon 2 of 6)	29279.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	87.52	118.88	77.7	86.36	71.84	76.36	60.2	66.33	76.82
Merged-chr15-59525937-3	chr15	59525422	59526422	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-122732.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	60.64	43.31	18.5	44.53	30.79	26.53	35.91	23.43	13.12
Merged-chr6-124894218-3	chr6	124893730	124894730	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6030.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	41.76	37.78	22.2	49.25	27.99	24.92	41.19	23.43	15.61
Merged-chr10-81997371-3	chr10	81996863	81997863	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50760.0	NM_001319203	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	17.73	14.75	7.4	14.84	10.73	13.66	16.9	13.27	14.99
Merged-chr4-8915745-3	chr4	8915257	8916257	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	164433.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	19.45	10.14	18.5	23.62	7.93	12.86	30.63	18.13	14.36
Merged-chr14-73173861-3	chr14	73173366	73174366	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170694, exon 11 of 15)	exon (NM_001170694, exon 11 of 15)	31081.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	85.81	83.4	49.02	112.0	68.11	106.1	104.56	88.88	63.7
Merged-chr8-40994086-3	chr8	40993563	40994563	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 13 of 13)	intron (NM_001005863, intron 13 of 13)	-23405.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	30.89	19.35	45.32	29.01	16.79	30.54	17.96	14.15	8.74
Merged-chr18-10532548-3	chr18	10532045	10533045	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	77807.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	79.52	75.11	66.6	88.39	87.7	53.85	136.25	146.8	68.7
Merged-chr9-42908896-3	chr9	42908393	42909393	+	990.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	35478.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	39.47	24.88	30.52	37.78	13.53	21.7	19.01	20.78	18.74
Merged-chr15-27215917-2	chr15	27215408	27216408	+	990.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250769.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	1.14	7.83	0.0	6.75	6.06	3.22	7.39	6.63	6.25
Merged-chr2-163932355-2	chr2	163931858	163932858	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13675.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	16.59	12.44	3.7	37.78	23.33	14.47	7.39	2.21	5.0
Merged-chr17-29094649-4	chr17	29094174	29095174	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007669, intron 1 of 2)	CpG	905.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	169.9	149.75	110.07	134.94	116.63	132.63	114.07	102.14	31.85
Merged-chr19-10290519-4	chr19	10290034	10291034	+	990.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	14343.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	64.64	33.64	37.0	91.09	58.31	56.27	60.2	34.05	16.24
Merged-chr17-43089727-3	chr17	43089233	43090233	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178589)	TTS (NM_178589)	68558.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	67.5	55.29	37.92	58.03	40.59	42.6	6.34	9.73	6.25
Merged-chr14-121929104-3	chr14	121928608	121929608	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-13334.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	243.69	259.42	158.17	186.9	172.61	126.19	154.2	172.0	93.68
Merged-chr15-59614387-3	chr15	59613884	59614884	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34270.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	104.11	99.07	84.17	89.06	62.51	90.83	79.21	73.84	68.7
Merged-chr12-84188437-3	chr12	84187939	84188939	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	5576.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	70.93	45.16	81.4	62.07	36.39	32.96	58.09	30.07	42.47
Merged-chr1-161560549-3	chr1	161560062	161561062	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	65905.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	8.58	7.37	1.85	4.05	2.33	0.8	1.06	3.1	3.12
Merged-chr11-69041078-3	chr11	69040590	69041590	+	990.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4547.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	73.22	120.26	62.9	85.01	66.71	68.32	92.94	134.86	75.57
Merged-chr10-34193878-3	chr10	34193373	34194373	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	13678.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	114.41	102.29	86.95	116.05	78.37	110.12	124.63	90.2	94.3
Merged-chr6-88901723-1	chr6	88901223	88902223	+	990.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011906)	promoter-TSS (NM_011906)	-528.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	85.24	107.82	73.07	134.94	168.88	153.52	153.15	210.47	68.07
Merged-chr17-13945423-3	chr17	13944900	13945900	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2973.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	49.77	41.93	25.9	44.53	42.92	36.97	34.85	45.54	11.87
Merged-chr6-50030125-3	chr6	50029622	50030622	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80119.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	5.72	6.91	2.77	12.14	9.33	2.41	8.45	9.29	3.12
Merged-chr2-30829603-3	chr2	30829111	30830111	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1311.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	8.01	4.15	12.95	10.12	7.93	4.82	9.51	6.19	9.37
Merged-chr10-69321460-3	chr10	69321014	69322014	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31398.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	21.17	19.81	6.47	17.54	13.06	22.51	42.25	23.88	11.87
Merged-chr9-95575118-3	chr9	95574613	95575613	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15296.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	231.11	183.85	126.72	250.99	171.21	203.36	285.17	272.82	148.64
Merged-chr16-3894936-3	chr16	3894450	3895450	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153801)	TTS (NR_153801)	10331.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	92.1	119.34	132.27	55.33	61.11	81.18	87.66	98.6	94.3
Merged-chr12-112795921-1	chr12	112795421	112796421	+	990.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13054.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	20.02	10.6	1.85	3.37	1.4	2.41	2.11	0.88	1.25
Merged-chr17-21535486-3	chr17	21534987	21535987	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144515)	promoter-TSS (NM_144515)	-52.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	60.07	60.36	83.25	65.45	46.65	71.54	80.27	85.78	57.46
Merged-chr10-123112948-3	chr10	123112442	123113442	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027604, exon 22 of 22)	3' UTR (NM_027604, exon 22 of 22)	-36437.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	29.75	25.8	12.95	26.31	32.66	49.03	23.24	19.01	6.25
Merged-chr2-118597768-3	chr2	118597269	118598269	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009773)	promoter-TSS (NM_009773)	-442.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	61.78	46.54	22.2	64.77	40.59	53.05	88.72	89.76	54.33
Merged-chr7-128411161-3	chr7	128410647	128411647	+	990.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	7025.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	74.94	112.43	89.72	68.15	62.51	64.3	57.03	72.96	53.08
Merged-chr7-45454844-8	chr7	45454371	45455371	+	990.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030678, exon 15 of 16)	exon (NM_030678, exon 15 of 16)	5015.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	10.87	9.68	9.25	18.89	1.87	13.66	7.39	3.54	6.87
Merged-chr4-120925839-3	chr4	120925260	120926260	+	990.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160043)	promoter-TSS (NM_001160043)	-755.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	149.31	168.65	121.17	130.9	95.17	119.76	117.24	180.4	96.18
Merged-chr13-34046583-3	chr13	34046071	34047071	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 2 of 6)	intron (NM_026512, intron 2 of 6)	8930.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	11.44	5.99	6.47	11.47	3.27	0.0	1.06	2.65	0.0
Merged-chr19-41331810-3	chr19	41331314	41332314	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 3 of 16)	intron (NM_031376, intron 3 of 16)	53256.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	163.04	135.93	94.35	172.05	140.42	101.28	213.35	186.59	118.66
Merged-chr1-149831281-3	chr1	149830791	149831791	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	91148.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	24.6	21.2	20.35	16.87	6.53	11.25	28.52	14.15	27.48
Merged-chr12-34696951-3	chr12	34696437	34697437	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-168048.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	47.48	55.75	34.22	41.16	41.05	59.48	62.31	55.27	39.35
Merged-chr12-55499219-3	chr12	55498691	55499691	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6544.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.58	4.15	0.92	6.07	3.73	0.0	3.17	3.98	6.25
Merged-chr11-8579523-3	chr11	8579032	8580032	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	intron (NM_001083587, intron 3 of 30)	85003.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	173.9	205.51	159.09	217.93	270.57	163.17	154.2	158.3	102.42
Merged-chr3-126610087-3	chr3	126609571	126610571	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	13120.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	62.93	70.04	31.45	66.12	40.59	27.33	35.91	31.39	26.23
Merged-chr19-4755787-3	chr19	4755271	4756271	+	990.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025717)	promoter-TSS (NM_025717)	-754.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	188.21	205.51	87.87	178.13	153.95	112.53	165.82	171.56	104.92
Merged-chr7-45526888-2	chr7	45526373	45527373	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008654)	promoter-TSS (NM_008654)	543.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	165.9	168.19	99.89	151.81	164.21	136.64	126.74	150.78	74.32
Merged-chr14-25458544-1	chr14	25458044	25459044	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310666)	promoter-TSS (NM_001310666)	-641.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	13.73	6.91	7.4	22.94	18.66	12.06	5.28	14.15	8.74
Merged-chr1-36436785-3	chr1	36436296	36437296	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310517, intron 4 of 8)	L1MB7|LINE|L1	8475.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	37.76	43.77	31.45	39.81	15.86	57.07	29.57	38.47	36.85
Merged-chr18-9213535-2	chr18	9213049	9214049	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008058, exon 1 of 1)	exon (NM_008058, exon 1 of 1)	693.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	5.15	1.38	1.85	2.7	2.8	3.22	1.06	0.44	3.12
Merged-chr11-99449852-3	chr11	99449358	99450358	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11705.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	69.22	100.45	91.57	109.98	99.83	90.83	119.35	115.85	61.2
Merged-chrX-8145325-3	chrX	8144820	8145820	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033561)	promoter-TSS (NR_033561)	-107.0	NR_033561	70226.0	Mm.391639	NR_033561	ENSMUSG00000055188	Rbm3os	2900002K06Rik	RNA binding motif protein 3, opposite strand	ncRNA	279.73	275.55	160.94	246.95	289.24	163.17	186.94	306.42	121.16
Merged-chr5-96793435-3	chr5	96792949	96793949	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013470)	promoter-TSS (NM_013470)	64.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	35.47	38.25	38.85	43.86	29.86	61.09	71.82	56.16	42.47
Merged-chr11-103101621-3	chr11	103101122	103102122	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025988)	promoter-TSS (NM_025988)	36.0	NM_152813	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	58.92	64.97	12.02	77.59	107.3	44.21	32.74	26.97	12.49
Merged-chr4-88727440-3	chr4	88726944	88727944	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4936.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	25.17	21.2	35.15	19.57	12.13	12.06	34.85	16.8	34.35
Merged-chr7-64341914-2	chr7	64341410	64342410	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	32185.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	49.2	67.74	54.57	74.89	65.78	78.77	101.39	95.07	84.94
Merged-chr8-84068835-3	chr8	84068330	84069330	+	990.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	1994.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	118.99	113.81	107.29	146.41	95.63	132.63	106.67	117.62	71.82
Merged-chr10-111156623-1	chr10	111156123	111157123	+	990.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8179.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	29.75	17.97	18.5	24.29	19.13	28.13	9.51	15.92	2.5
Merged-chr5-67297216-3	chr5	67296698	67297698	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9757.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	46.34	88.47	60.12	55.33	44.78	64.3	62.31	79.59	35.6
Merged-chr1-62701213-3	chr1	62700723	62701723	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2094.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	10.3	2.3	3.7	8.1	3.27	2.41	5.28	4.42	0.0
Merged-chr10-77974901-3	chr10	77974418	77975418	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3732.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	70.93	63.59	63.82	53.3	43.85	49.83	85.55	68.09	38.1
Merged-chr15-35152717-3	chr15	35152213	35153213	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	3093.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	16.02	17.05	23.12	24.29	14.46	28.13	20.07	15.92	16.86
Merged-chr13-54303483-3	chr13	54302983	54303983	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67866.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	48.05	63.59	70.3	41.83	50.38	45.01	129.91	97.28	78.07
Merged-chr3-54681765-3	chr3	54681259	54682259	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-11056.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	20.02	20.27	11.1	23.62	19.13	16.88	15.84	26.97	14.99
Merged-chr19-7218183-3	chr19	7217700	7218700	+	990.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007750)	promoter-TSS (NM_007750)	-584.0	NM_007750	12868.0	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	89.81	100.45	72.15	87.71	58.78	75.56	81.33	119.83	52.46
Merged-chr13-54611169-4	chr13	54610658	54611658	+	990.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347512, exon 1 of 6)	exon (NM_001347512, exon 1 of 6)	215.0	NM_028870	74325.0	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	144.16	97.23	61.97	125.5	120.83	69.93	100.34	72.07	36.22
Merged-chr4-137465335-2	chr4	137464818	137465818	+	990.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3485.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	1.14	3.69	5.55	26.99	18.19	11.25	24.29	7.96	9.37
Merged-chr11-3151451-2	chr11	3150958	3151958	+	990.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B1F|SINE|Alu	27437.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	33.18	39.17	69.37	64.1	44.78	56.27	1.06	2.21	88.06
Merged-chr5-120513022-3	chr5	120512518	120513518	+	990.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 1 of 13)	intron (NM_001177595, intron 1 of 13)	1826.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	149.88	175.56	142.44	153.84	188.94	216.22	218.63	272.82	166.75
Merged-chr3-108086737-3	chr3	108086232	108087232	+	990.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028779)	promoter-TSS (NM_028779)	-66.0	NM_001289719	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	60.64	54.83	59.2	82.99	63.45	82.79	102.45	80.03	40.59
Merged-chr10-79877346-3	chr10	79876831	79877831	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-2336.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	20.59	25.34	29.6	16.19	24.72	32.96	45.42	34.93	29.35
Merged-chr11-44417593-3	chr11	44417102	44418102	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17539.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	26.31	22.58	14.8	47.23	25.66	24.92	47.53	33.6	29.98
Merged-chr6-8339667-3	chr6	8339169	8340169	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	80381.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	10.87	12.9	16.65	12.14	10.73	16.08	12.67	13.71	9.99
Merged-chr14-25505424-3	chr14	25504942	25505942	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-28997.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	32.61	33.64	12.95	58.03	49.45	28.13	16.9	9.29	8.74
Merged-chr11-76497903-3	chr11	76497416	76498416	+	990.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	-3421.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	61.21	50.69	60.12	58.7	34.52	64.3	57.03	52.18	48.71
Merged-chr11-63151935-4	chr11	63151422	63152422	+	990.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 4 of 4)	intron (NM_001302255, intron 4 of 4)	19119.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	63.5	92.62	55.5	73.54	63.91	62.7	47.53	42.45	35.6
Merged-chr3-52090357-4	chr3	52089801	52090801	+	990.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	14705.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	49.2	58.06	49.02	48.58	39.19	73.14	62.31	41.56	37.47
Merged-chr2-92478502-2	chr2	92478002	92479002	+	990.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-17984.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	6.86	10.14	5.55	33.74	26.12	74.75	23.24	26.97	32.48
Merged-chr8-16427633-3	chr8	16427139	16428139	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053171, intron 7 of 69)	ORR1E|LTR|ERVL-MaLR	-258801.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	4.0	7.37	3.7	8.1	7.0	11.25	4.22	12.82	9.37
Merged-chr2-122631108-3	chr2	122630649	122631649	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033256, exon 1 of 2)	exon (NM_001033256, exon 1 of 2)	524.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	133.86	96.76	76.77	157.88	117.56	87.61	134.14	101.7	56.83
Merged-chr8-108714386-3	chr8	108713876	108714876	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007496)	promoter-TSS (NM_007496)	-268.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	90.38	81.1	150.77	80.29	73.24	98.87	80.27	65.0	56.21
Merged-chr5-25084015-1	chr5	25083515	25084515	+	990.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	16627.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	1.72	1.84	0.0	6.75	5.6	11.25	5.28	3.98	3.75
Merged-chr16-57569175-3	chr16	57568687	57569687	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	MIR|SINE|MIR	19945.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	73.79	94.92	52.72	89.06	37.79	46.62	59.15	69.86	35.6
Merged-chr16-11676183-3	chr16	11675686	11676686	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-103516.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	43.48	36.86	48.1	29.01	27.52	49.83	108.79	108.33	56.21
Merged-chr17-35870847-3	chr17	35870334	35871334	+	990.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	4219.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	108.12	112.43	76.77	70.85	59.71	131.82	106.67	87.55	106.79
Merged-chr6-85588738-3	chr6	85588240	85589240	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145223, intron 1 of 22)	intron (NM_145223, intron 1 of 22)	1209.0	NM_145223	236266.0	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	ALMS1, centrosome and basal body associated	protein-coding	35.47	32.72	19.42	22.27	20.06	40.99	48.58	55.27	15.61
Merged-chr12-80814042-3	chr12	80813548	80814548	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	23516.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	100.68	110.59	37.92	78.27	74.17	62.7	89.78	138.4	64.33
Merged-chr11-43383781-3	chr11	43383283	43384283	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9322.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	213.38	223.02	115.62	145.74	125.02	109.32	181.66	184.38	117.41
Merged-chr5-31887755-3	chr5	31887247	31888247	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	189697.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	18.31	14.28	17.57	17.54	9.8	12.06	16.9	10.17	10.62
Merged-chr5-114722169-3	chr5	114721675	114722675	+	990.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029992, exon 13 of 13)	3' UTR (NM_029992, exon 13 of 13)	2660.0	NR_105995	102465622.0		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	39.47	20.74	23.12	40.48	19.13	19.29	10.56	14.59	10.62
Merged-chr11-103159185-3	chr11	103158678	103159678	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11960.0	NM_001077698	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	18.88	4.61	0.0	4.05	3.73	1.61	2.11	7.07	0.0
Merged-chr19-5815243-3	chr19	5814735	5815735	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12563.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	72.08	75.57	51.8	132.24	102.63	102.88	81.33	59.69	61.2
Merged-chrX-103555251-3	chrX	103554732	103555732	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9732.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	17.73	8.75	6.47	14.84	8.86	9.65	8.45	12.82	14.99
Merged-chr18-62092758-3	chr18	62092273	62093273	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87208.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	93.82	67.74	79.55	66.8	31.72	47.42	64.43	32.72	31.23
Merged-chr11-101952910-3	chr11	101952419	101953419	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045806, intron 1 of 3)	intron (NR_045806, intron 1 of 3)	498.0	NR_045806	73887.0	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	45.19	39.17	31.45	54.65	30.79	49.03	39.08	39.8	33.1
Merged-chr6-113850031-3	chr6	113849533	113850533	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	41506.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	7.44	3.69	5.55	6.07	5.13	17.68	9.51	2.21	2.5
Merged-chr18-12728997-3	chr18	12728504	12729504	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 9 of 13)	intron (NM_028341, intron 9 of 13)	-12351.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	6.86	5.53	4.62	7.42	4.67	8.84	25.35	13.71	13.12
Merged-chr1-87652849-3	chr1	87652350	87653350	+	990.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32538.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	98.97	112.89	58.27	100.53	72.78	118.96	118.29	123.36	74.32
Merged-chr12-38844208-3	chr12	38843702	38844702	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	60491.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	15.45	15.67	8.32	18.89	12.6	16.88	10.56	11.5	14.99
Merged-chr5-105698852-3	chr5	105698392	105699392	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	79.52	52.99	46.25	78.27	50.38	64.3	54.92	58.81	34.35
Merged-chr9-123940829-3	chr9	123940329	123941329	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	27863.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	86.38	71.88	70.3	72.19	38.25	64.3	45.42	36.26	35.6
Merged-chr5-93206018-3	chr5	93205538	93206538	+	990.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029363)	promoter-TSS (NM_029363)	457.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	157.89	204.59	188.69	193.64	210.86	164.78	254.54	209.15	121.78
Merged-chr6-82753740-2	chr6	82753255	82754255	+	990.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	20699.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	68.65	67.74	65.67	88.39	74.64	57.07	130.97	96.83	61.2
Merged-chr19-9122618-3	chr19	9122131	9123131	+	990.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12935.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	30.89	22.58	22.2	12.82	12.13	17.68	8.45	7.52	13.74
Merged-chr12-16878782-2	chr12	16878273	16879273	+	990.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16205.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	95.53	145.61	79.55	105.26	92.37	107.71	35.91	52.18	34.97
Merged-chr9-71805849-3	chr9	71805368	71806368	+	990.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34266.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	14.87	5.53	3.7	4.05	7.93	3.22	15.84	7.07	7.49
Merged-chr8-125600199-3	chr8	125599692	125600692	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	15554.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	76.08	69.12	61.97	96.48	80.24	100.47	72.88	74.28	48.71
Merged-chr1-191087120-3	chr1	191086611	191087611	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11303.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	193.35	166.34	131.34	165.98	116.16	122.98	170.05	170.68	93.05
Merged-chr16-21636347-3	chr16	21635853	21636853	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	58312.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	96.68	146.07	105.44	166.66	180.07	184.07	193.28	218.87	155.51
Merged-chr17-28407657-3	chr17	28407173	28408173	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42457.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	32.04	13.36	19.42	31.71	20.99	40.19	31.69	32.72	9.37
Merged-chr18-58563766-3	chr18	58563270	58564270	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	7530.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	25.17	58.06	23.12	40.48	45.25	32.15	12.67	19.9	36.22
Merged-chr5-93268994-3	chr5	93268497	93269497	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007635, intron 2 of 7)	intron (NM_007635, intron 2 of 7)	1424.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	64.07	75.57	61.05	110.65	88.17	76.36	52.81	54.39	53.08
Merged-chr16-91789924-3	chr16	91789402	91790402	+	990.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 4 of 15)	ORR1D2|LTR|ERVL-MaLR	60531.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	36.04	22.12	9.25	26.31	16.33	19.29	15.84	12.38	14.36
Merged-chr7-82688883-2	chr7	82688376	82689376	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175317, intron 12 of 19)	RMER17C|LTR|ERVK	40262.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	12.01	4.15	12.02	4.72	4.67	5.63	6.34	3.98	11.24
Merged-chr9-78521107-3	chr9	78520622	78521622	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39398.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	26.31	21.66	9.25	41.83	41.05	16.88	47.53	26.53	25.61
Merged-chr2-131180151-3	chr2	131179635	131180635	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007682)	promoter-TSS (NM_007682)	-68.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	50.34	44.7	50.87	47.23	43.85	76.36	41.19	45.54	36.85
Merged-chr1-74237906-3	chr1	74237409	74238409	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	1392.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	140.73	164.04	127.64	118.08	112.43	114.94	152.09	212.68	104.3
Merged-chr2-24335475-3	chr2	24334983	24335983	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1377.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	22.31	12.9	14.8	13.49	16.33	16.88	11.62	12.38	19.36
Merged-chr5-107749770-1	chr5	107749270	107750270	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-23965.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	2.29	3.23	3.7	8.77	7.93	8.04	6.34	5.75	3.75
Merged-chr7-30654629-1	chr7	30654129	30655129	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027999, intron 17 of 18)	intron (NM_027999, intron 17 of 18)	-4401.0	NM_133693	68035.0	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	10.87	14.28	39.77	9.45	6.06	20.09	5.28	9.29	18.11
Merged-chr1-87555207-3	chr1	87554695	87555695	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111314, intron 1 of 14)	MTE2a|LTR|ERVL-MaLR	18675.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	44.05	36.4	21.27	22.27	17.73	28.13	26.4	38.03	19.98
Merged-chr14-26442797-3	chr14	26442236	26443236	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347494, intron 10 of 19)	intron (NM_001347494, intron 10 of 19)	85189.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	60.07	67.74	61.05	56.68	84.44	60.28	70.76	99.05	44.34
Merged-chr13-48645207-3	chr13	48644709	48645709	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17827.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	4.0	7.83	1.85	6.07	8.4	4.82	7.39	2.65	5.0
Merged-chr8-94876378-3	chr8	94875885	94876885	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053246)	promoter-TSS (NM_053246)	-73.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	2.29	3.23	2.77	3.37	3.27	0.0	7.39	0.44	2.5
Merged-chr4-8690657-3	chr4	8690192	8691192	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001277149, exon 1 of 38)	5' UTR (NM_001277149, exon 1 of 38)	286.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	169.33	155.28	213.66	170.7	130.16	118.96	171.1	94.18	106.79
Merged-chr5-124862989-1	chr5	124862489	124863489	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144819)	promoter-TSS (NM_144819)	284.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	6.86	5.53	3.7	10.8	1.87	3.22	6.34	2.65	2.5
Merged-chrX-159145399-3	chrX	159144895	159145895	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-110387.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	18.31	17.51	12.95	21.59	14.46	22.51	12.67	8.84	17.49
Merged-chr2-126073894-3	chr2	126073402	126074402	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	39244.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	28.6	25.8	12.95	31.71	34.99	32.96	24.29	20.34	18.11
Merged-chr7-45456420-6	chr7	45455842	45456842	+	990.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030678, exon 16 of 16)	3' UTR (NM_030678, exon 16 of 16)	3544.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	60.64	27.19	39.77	36.43	20.06	44.21	31.69	31.39	33.72
Merged-chr9-65195760-2	chr9	65195256	65196256	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18934.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	18.31	15.21	14.8	89.06	75.57	90.83	62.31	72.07	48.71
Merged-chr10-4341627-1	chr10	4341127	4342127	+	990.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	45848.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.57	5.07	3.7	1.35	2.33	1.61	2.11	4.42	0.0
Merged-chr5-97345323-3	chr5	97344822	97345822	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	47008.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	9.15	13.82	12.02	18.22	13.53	20.9	9.51	7.52	14.36
Merged-chr12-55569901-3	chr12	55569400	55570400	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4695.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	8.58	7.37	3.7	3.37	5.13	4.82	7.39	1.77	2.5
Merged-chr7-55853551-3	chr7	55853042	55854042	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	L1ME3G|LINE|L1	11471.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	176.76	128.56	126.72	106.61	57.38	74.75	108.79	112.75	93.05
Merged-chr12-85397315-3	chr12	85396844	85397844	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22627.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	72.65	67.74	47.17	139.67	152.08	126.19	60.2	59.25	51.21
Merged-chr15-83171330-3	chr15	83170823	83171823	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	885.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	140.73	119.8	57.35	99.18	102.17	64.3	88.72	96.83	48.71
Merged-chr7-110389066-3	chr7	110388555	110389555	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	167352.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	25.17	29.95	24.97	18.89	18.66	21.7	27.46	29.18	21.23
Merged-chr8-35645585-3	chr8	35645078	35646078	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-56558.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.44	7.37	16.65	12.82	9.8	19.29	14.79	9.29	6.25
Merged-chr14-122464057-3	chr14	122463531	122464531	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	1627.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	15.45	3.23	1.85	8.1	6.06	1.61	7.39	5.31	3.75
Merged-chr2-160091239-3	chr2	160090757	160091757	+	989.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74604.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	18.31	17.97	22.2	27.66	13.06	28.13	19.01	18.13	15.61
Merged-chr13-102658628-2	chr13	102658124	102659124	+	989.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34923.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	69.79	110.13	79.55	3.37	3.73	4.02	84.49	86.22	61.2
Merged-chr11-118153182-2	chr11	118152688	118153688	+	989.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-23969.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.0	9.22	9.25	120.77	89.57	88.42	15.84	11.5	11.24
Merged-chr19-12006248-2	chr19	12005690	12006690	+	989.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30550.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	90.96	94.46	42.55	80.97	66.24	67.52	94.0	112.75	52.46
Merged-chr15-53283187-2	chr15	53282692	53283692	+	989.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	62991.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.86	3.23	1.85	4.72	3.27	2.41	5.28	1.77	3.12
Merged-chr18-65680299-3	chr18	65679789	65680789	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-17979.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	230.54	245.14	235.86	261.79	264.04	234.71	297.84	333.84	112.42
Merged-chr17-5797520-3	chr17	5797016	5798016	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1141.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	85.81	55.75	45.32	81.64	32.19	70.73	99.28	84.45	44.97
Merged-chr11-86746237-3	chr11	86745731	86746731	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11336.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	138.44	137.77	86.02	136.29	79.77	114.14	95.06	145.47	94.93
Merged-chr2-26498378-3	chr2	26497866	26498866	+	989.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	5456.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	74.37	51.61	45.32	99.18	100.77	102.08	90.83	108.33	67.45
Merged-chr19-23142112-2	chr19	23141603	23142603	+	989.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010638, exon 1 of 2)	exon (NM_010638, exon 1 of 2)	877.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	45.19	46.08	21.27	150.46	143.68	137.45	197.51	166.25	113.66
Merged-chr3-19474267-2	chr3	19473764	19474764	+	989.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34331.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	26.31	21.2	20.35	15.52	6.53	8.04	6.34	5.31	3.75
Merged-chr12-73876549-3	chr12	73876041	73877041	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24783.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	53.2	41.47	41.62	24.96	18.19	17.68	44.36	32.72	22.48
Merged-chr19-38015744-3	chr19	38015237	38016237	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	27840.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	46.34	39.63	30.52	69.5	41.52	61.89	8.45	9.73	16.86
Merged-chr1-54523912-3	chr1	54523411	54524411	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163314, intron 12 of 26)	intron (NM_001163314, intron 12 of 26)	33773.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.0	6.91	5.55	9.45	2.8	7.23	11.62	5.31	7.49
Merged-chrX-52560182-3	chrX	52559673	52560673	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016697, intron 2 of 7)	intron (NM_016697, intron 2 of 7)	-15670.0	NR_045367	100504594.0	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	6.29	4.61	5.55	8.77	0.47	3.22	4.22	3.54	6.25
Merged-chr13-100492531-3	chr13	100492001	100493001	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153794)	promoter-TSS (NR_153794)	-107.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	30.32	41.47	44.4	32.39	26.59	65.91	67.6	56.6	25.61
Merged-chr8-125067548-8	chr8	125067181	125068181	+	989.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	13486.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	319.78	276.01	219.21	370.42	285.04	221.04	363.33	367.0	189.23
Merged-chr7-38156023-1	chr7	38155523	38156523	+	989.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-27194.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	2.86	0.92	0.0	0.67	0.0	1.61	2.11	3.98	1.25
Merged-chr11-94653862-3	chr11	94653349	94654349	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177752)	promoter-TSS (NM_177752)	58.0	NM_053161	94064.0	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	90.96	104.14	123.94	112.0	95.17	118.96	120.41	105.68	58.08
Merged-chr17-23998554-3	chr17	23998058	23999058	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133731)	promoter-TSS (NM_133731)	-458.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	3.43	3.69	1.85	4.72	1.87	8.04	4.22	2.21	1.25
Merged-chr4-35156317-3	chr4	35155829	35156829	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	1155.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	13.73	20.74	6.47	37.78	13.06	21.7	20.07	7.07	8.74
Merged-chr1-70856124-3	chr1	70855638	70856638	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	130423.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	14.87	14.28	14.8	9.45	11.66	12.06	11.62	8.84	9.99
Merged-chr13-21200655-3	chr13	21200157	21201157	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20726.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	30.32	32.72	25.9	33.74	41.99	22.51	29.57	27.86	32.48
Merged-chr2-11333073-3	chr2	11332564	11333564	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6425.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	105.26	68.66	51.8	138.99	143.68	79.58	102.45	106.56	43.72
Merged-chr15-77841429-3	chr15	77840925	77841925	+	989.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	CpG	750.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	232.83	280.62	301.53	151.14	192.2	266.86	191.17	241.42	226.08
Merged-chr11-114891331-3	chr11	114890822	114891822	+	989.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170758, intron 1 of 6)	Lx8|LINE|L1	1281.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	173.33	154.36	114.69	273.94	252.85	196.12	255.6	370.54	106.17
Merged-chr4-126102557-3	chr4	126102077	126103077	+	989.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_028800	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	125.28	121.19	111.92	159.91	172.61	132.63	74.99	108.77	63.7
Merged-chr1-69687224-3	chr1	69686721	69687721	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1261.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	32.61	29.03	33.3	47.9	32.19	28.13	34.85	17.69	22.48
Merged-chr13-55210985-3	chr13	55210458	55211458	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 1 of 22)	CpG	1176.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	413.59	379.69	290.44	346.13	352.21	339.2	350.65	312.17	269.17
Merged-chr8-120786600-3	chr8	120786114	120787114	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47975.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	20.59	18.43	9.25	39.13	21.93	34.56	45.42	30.07	13.74
Merged-chr11-101725180-3	chr11	101724680	101725680	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7776.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	11.44	8.29	1.85	27.66	19.13	8.84	21.12	24.32	5.0
Merged-chrX-102032035-3	chrX	102031537	102032537	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	39270.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	11.44	6.91	3.7	4.72	7.0	10.45	9.51	2.65	3.12
Merged-chr5-150598398-3	chr5	150597882	150598882	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3857.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	189.92	204.13	123.02	165.31	179.14	165.58	213.35	239.21	106.79
Merged-chr8-86921159-3	chr8	86920661	86921661	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35903.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.58	6.91	1.85	8.77	4.67	13.66	3.17	2.21	3.12
Merged-chr1-88699601-3	chr1	88699096	88700096	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	2595.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	132.14	166.34	86.95	147.09	113.36	100.47	128.85	178.19	74.32
Merged-chr5-123891867-3	chr5	123891382	123892382	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11862.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	80.66	29.95	22.2	62.07	22.39	12.86	44.36	43.33	15.61
Merged-chr19-43965791-3	chr19	43965259	43966259	+	989.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030703, intron 6 of 8)	intron (NM_030703, intron 6 of 8)	20761.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	103.54	84.32	57.35	90.41	88.17	99.67	79.21	63.23	28.1
Merged-chr16-33345188-3	chr16	33344676	33345676	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	35560.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	56.63	42.85	28.67	66.8	41.52	36.97	69.71	66.33	34.35
Merged-chr10-94828648-3	chr10	94828153	94829153	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	115925.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	16.59	13.36	5.55	16.19	9.8	1.61	10.56	4.86	9.99
Merged-chr14-20828705-3	chr14	20828195	20829195	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7967.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	152.74	158.97	138.74	116.05	105.9	91.63	172.16	190.57	121.78
Merged-chr16-38110797-1	chr16	38110297	38111297	+	989.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	RSINE1|SINE|B4	-21537.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	7.44	7.83	5.55	10.12	6.53	4.82	19.01	19.01	7.49
Merged-chr13-6647349-3	chr13	6646856	6647856	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	1415.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	62.35	74.65	55.5	66.8	71.38	71.54	51.75	66.33	24.36
Merged-chr1-61141120-3	chr1	61140633	61141633	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163219.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	14.87	6.91	1.85	9.45	3.27	1.61	17.96	11.05	8.74
Merged-chr12-72362088-5	chr12	72361589	72362589	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	46965.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	15.45	14.75	14.8	17.54	14.0	30.54	33.8	20.34	31.85
Merged-chr13-9382020-3	chr13	9381536	9382536	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	105511.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	46.34	32.25	12.95	44.53	25.66	23.31	28.52	26.09	17.49
Merged-chr4-116052869-3	chr4	116052372	116053372	+	989.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	1004.0	NM_028142	72181.0	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	80.09	83.4	26.82	92.44	78.37	45.01	101.39	124.69	47.46
Merged-chr8-119353583-2	chr8	119353053	119354053	+	989.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	9015.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	17.16	12.44	31.45	21.59	14.93	21.7	22.18	12.82	10.62
Merged-chr7-126738133-2	chr7	126737645	126738645	+	989.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21481.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	3.43	2.3	5.55	26.31	17.73	22.51	32.74	30.95	21.23
Merged-chr4-134764450-3	chr4	134763951	134764951	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	3553.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	99.54	98.61	102.67	134.27	107.76	152.72	174.27	160.06	99.92
Merged-chr4-53154999-3	chr4	53154490	53155490	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	4905.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	160.18	157.13	74.0	217.93	167.94	165.58	161.6	164.93	106.17
Merged-chr17-71206276-3	chr17	71205782	71206782	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	1628.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	44.05	22.58	9.25	47.9	23.79	11.25	36.97	44.22	16.86
Merged-chr1-85853488-3	chr1	85853008	85854008	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41002.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	3.43	4.15	3.7	6.75	3.73	1.61	6.34	4.86	1.25
Merged-chr12-88361327-3	chr12	88360833	88361833	+	989.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361598, intron 1 of 9)	MER5A|DNA|hAT-Charlie	551.0	NM_001361598	72113.0	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	49.2	47.0	27.75	71.52	85.84	45.82	80.27	72.96	31.23
Merged-chr12-113130289-3	chr12	113129795	113130795	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 11 of 19)	intron (NM_001346696, intron 11 of 19)	-9941.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	90.96	57.6	48.1	52.63	30.32	46.62	52.81	50.85	37.47
Merged-chr2-166979256-3	chr2	166978731	166979731	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	RSINE1|SINE|B4	-14514.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	109.26	93.08	63.82	97.83	92.84	66.71	115.12	136.63	66.82
Merged-chr8-24419482-3	chr8	24418962	24419962	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19484.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	26.89	27.19	8.32	89.06	65.78	37.78	55.98	67.65	23.11
Merged-chr11-3667718-3	chr11	3667207	3668207	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198162, intron 3 of 25)	intron (NM_198162, intron 3 of 25)	9007.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	38.33	47.0	37.92	22.27	25.66	45.01	55.98	48.2	28.1
Merged-chr18-34930452-3	chr18	34929953	34930953	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	1550.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	146.45	170.49	98.05	132.24	98.9	76.36	156.32	184.83	101.8
Merged-chr8-45899926-3	chr8	45899436	45900436	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016798, intron 2 of 6)	intron (NM_016798, intron 2 of 6)	14451.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	4.0	6.45	3.7	2.02	5.6	1.61	4.22	2.65	6.25
Merged-chr1-171660614-3	chr1	171660122	171661122	+	989.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-7585.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	32.61	21.66	12.95	35.76	39.19	17.68	36.97	32.28	17.49
Merged-chr10-122985583-4	chr10	122985073	122986073	+	989.535706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029527)	TTS (NR_029527)	151.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	127.57	118.42	139.67	186.22	154.41	118.96	168.99	137.51	82.44
Merged-chr11-120310986-3	chr11	120310510	120311510	+	989.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	36403.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	6.86	0.92	3.7	3.37	1.4	1.61	5.28	0.0	0.0
Merged-chr16-51930140-3	chr16	51929725	51930725	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57062.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	18.88	12.9	0.0	16.19	13.53	11.25	23.24	19.01	6.25
Merged-chr17-50369509-3	chr17	50369066	50370066	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75946.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	30.32	17.51	29.6	22.94	12.6	20.9	33.8	33.6	12.49
Merged-chr11-30954017-2	chr11	30953517	30954517	+	989.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023906)	promoter-TSS (NM_023906)	114.0	NM_025745	66753.0	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	76.08	56.68	44.4	57.35	34.52	45.82	66.54	46.87	32.48
Merged-chr4-11123752-3	chr4	11123242	11124242	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151526)	promoter-TSS (NR_151526)	-216.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	25.17	31.33	14.8	18.22	16.79	17.68	14.79	15.48	22.48
Merged-chr2-5014806-3	chr2	5014300	5015300	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2009.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	37.76	48.84	66.6	19.57	25.66	39.39	48.58	54.83	45.59
Merged-chr7-125541072-3	chr7	125540536	125541536	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11246.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	72.65	63.13	35.15	66.12	53.65	44.21	96.11	72.07	41.84
Merged-chr18-80738359-3	chr18	80737855	80738855	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201569, intron 28 of 29)	intron (NM_001201569, intron 28 of 29)	-25284.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	26.31	35.02	24.05	45.88	37.32	32.15	14.79	7.96	8.12
Merged-chr4-150371878-3	chr4	150371376	150372376	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	CpG	89960.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	26.31	13.36	4.62	28.34	17.73	19.29	15.84	9.73	3.75
Merged-chr6-37441824-2	chr6	37441300	37442300	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178661, exon 1 of 12)	exon (NM_178661, exon 1 of 12)	348.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	90.96	105.98	86.95	86.36	96.1	102.88	118.29	118.94	59.33
Merged-chr11-101562629-3	chr11	101562136	101563136	+	989.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 7 of 23)	B2_Mm2|SINE|B2	9982.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	16.02	21.66	15.72	12.14	16.79	16.88	8.45	13.27	6.25
Merged-chr11-4260701-3	chr11	4260247	4261247	+	989.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008501, intron 1 of 3)	intron (NM_008501, intron 1 of 3)	3179.0	NM_008501	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	18.88	7.83	22.2	27.66	12.13	11.25	14.79	11.5	9.37
Merged-chr14-30716270-3	chr14	30715792	30716792	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166532, intron 1 of 20)	CpG	677.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	265.43	269.1	272.86	324.54	308.36	237.12	330.59	275.91	164.88
Merged-chr3-65953946-3	chr3	65953430	65954430	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	4319.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	76.08	70.04	42.55	47.9	42.92	58.68	71.82	91.09	60.58
Merged-chr11-61642350-3	chr11	61641845	61642845	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10976.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	9.15	5.99	1.85	10.8	9.8	14.47	7.39	9.29	8.74
Merged-chr4-131843499-3	chr4	131843006	131844006	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025297)	promoter-TSS (NM_025297)	35.0	NM_025297	26922.0	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	33.75	21.66	14.8	29.69	17.26	28.94	16.9	17.24	17.49
Merged-chr2-104712248-3	chr2	104711696	104712696	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177190)	promoter-TSS (NM_177190)	-34.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	52.06	36.4	61.97	47.23	51.32	80.38	69.71	40.24	31.23
Merged-chr1-93446116-3	chr1	93445631	93446631	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301364)	promoter-TSS (NM_001301364)	-430.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	192.21	191.23	125.79	165.31	110.1	141.47	133.08	118.94	78.69
Merged-chrX-12832920-3	chrX	12832390	12833390	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	70612.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	56.63	50.23	44.4	58.03	52.25	61.09	46.47	55.27	34.97
Merged-chr11-5949779-3	chr11	5949293	5950293	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010292, exon 1 of 10)	5' UTR (NM_010292, exon 1 of 10)	288.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	7.44	3.23	3.7	8.77	1.87	3.22	6.34	2.65	6.25
Merged-chr11-43362058-3	chr11	43361550	43362550	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	12411.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	22.88	21.66	22.2	22.27	13.06	25.72	19.01	16.8	18.74
Merged-chr10-20653482-3	chr10	20652965	20653965	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	B4A|SINE|B4	71613.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	23.45	11.52	12.02	26.99	12.6	10.45	8.45	14.59	9.99
Merged-chr3-15576656-3	chr3	15576140	15577140	+	989.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	18.31	21.66	12.02	31.04	26.59	32.96	44.36	36.7	34.97
Merged-chr17-71504045-3	chr17	71503538	71504538	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023294, intron 13 of 16)	intron (NM_023294, intron 13 of 16)	22819.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	30.32	36.86	32.37	32.39	27.99	35.37	40.14	44.22	54.96
Merged-chr9-75094915-3	chr9	75094421	75095421	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	23715.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	2.86	6.91	0.0	2.7	5.6	3.22	2.11	4.86	3.75
Merged-chr11-75154395-3	chr11	75153886	75154886	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	13766.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	124.14	81.1	70.3	105.26	71.84	76.36	95.06	79.15	39.35
Merged-chr12-54696548-3	chr12	54696060	54697060	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331162)	promoter-TSS (NM_001331162)	-666.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	403.3	545.11	317.26	292.83	414.26	297.4	439.37	645.12	236.7
Merged-chr5-107646129-3	chr5	107645625	107646625	+	989.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 11 of 12)	B1_Mur1|SINE|Alu	-12275.0	NR_046195	78443.0	Mm.490703	NR_046195	ENSMUSG00000085900	A930041C12Rik	-	RIKEN cDNA A930041C12 gene	ncRNA	32.61	40.55	24.97	43.18	38.25	56.27	50.7	42.01	19.36
Merged-chr16-58512342-3	chr16	58511863	58512863	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	11063.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	173.33	173.25	98.97	205.11	157.68	151.11	125.69	163.16	101.8
Merged-chr7-19841515-3	chr7	19841001	19842001	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10502.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	13.73	17.97	13.87	22.27	18.19	24.11	16.9	16.36	12.49
Merged-chr11-58978725-3	chr11	58978214	58979214	+	989.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053168, intron 1 of 5)	intron (NM_053168, intron 1 of 5)	621.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	56.63	53.45	60.12	83.66	70.44	87.61	146.81	185.27	86.81
Merged-chr2-153275153-2	chr2	153274643	153275643	+	989.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16273.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	5.72	5.07	3.7	33.74	29.86	35.37	45.42	45.1	23.73
Merged-chrX-20617284-2	chrX	20616774	20617774	+	989.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167775)	promoter-TSS (NM_001167775)	-229.0	NM_001358904	236732.0	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	55.49	64.97	33.3	49.25	59.71	32.15	50.7	53.06	25.61
Merged-chr13-49243571-3	chr13	49243069	49244069	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	4725.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	32.61	26.73	5.55	22.27	12.6	32.96	11.62	12.38	16.86
Merged-chr10-87908984-3	chr10	87908474	87909474	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	47863.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	32.61	44.7	29.6	39.13	45.72	48.23	52.81	64.11	31.85
Merged-chr17-87446108-3	chr17	87445606	87446606	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007589, intron 1 of 5)	intron (NM_007589, intron 1 of 5)	829.0	NM_001355703	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	56.06	42.39	68.45	62.75	45.72	57.07	71.82	51.73	41.22
Merged-chr3-14886505-6	chr3	14886011	14887011	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009801, exon 1 of 7)	5' UTR (NM_009801, exon 1 of 7)	223.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	62.93	42.85	20.35	43.18	22.39	35.37	8.45	4.42	2.5
Merged-chr14-103343992-3	chr14	103343499	103344499	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	2801.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	48.05	86.17	59.2	52.63	48.52	43.4	70.76	101.7	36.22
Merged-chr18-67698671-3	chr18	67698170	67699170	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	25951.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	32.61	48.84	36.07	35.09	33.59	53.05	44.36	53.5	38.1
Merged-chr2-23015936-3	chr2	23015444	23016444	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	24297.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	106.4	98.61	71.22	112.0	52.25	86.01	204.9	177.75	89.93
Merged-chr8-60632790-3	chr8	60632311	60633311	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027756)	promoter-TSS (NM_027756)	-14.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	1.72	0.92	1.85	6.07	1.87	0.0	0.0	1.33	9.99
Merged-chr4-71126797-1	chr4	71126297	71127297	+	989.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-591869.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	1.14	3.69	0.0	2.02	1.87	8.04	4.22	4.86	5.62
Merged-chr17-26244723-3	chr17	26244213	26245213	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001206335)	promoter-TSS (NM_001206335)	-471.0	NM_001206335	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	212.8	198.6	102.67	174.75	121.29	88.42	123.57	170.68	86.81
Merged-chr14-103543549-3	chr14	103543052	103544052	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 7 of 30)	intron (NM_022886, intron 7 of 30)	30211.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	8.01	1.38	1.85	6.07	2.33	10.45	13.73	9.29	2.5
Merged-chr12-112809316-1	chr12	112808816	112809816	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_145450, exon 1 of 5)	5' UTR (NM_145450, exon 1 of 5)	341.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	88.1	74.65	41.62	9.45	4.2	11.25	9.51	5.75	2.5
Merged-chr2-167892117-3	chr2	167891613	167892613	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40214.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	13.73	10.14	8.32	9.45	12.13	11.25	11.62	6.19	10.62
Merged-chr3-135628196-3	chr3	135627697	135628697	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	63350.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	70.93	61.28	37.0	49.25	35.45	46.62	52.81	50.85	56.83
Merged-chr3-107357332-3	chr3	107356826	107357826	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24037.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	8.58	1.84	0.92	4.05	4.67	3.22	1.06	1.33	0.0
Merged-chr5-122054666-3	chr5	122054163	122055163	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-4812.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	17.16	13.36	14.8	9.45	8.86	11.25	15.84	8.4	9.99
Merged-chr4-149099744-3	chr4	149099237	149100237	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019781)	promoter-TSS (NM_019781)	75.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	25.17	23.5	40.7	20.92	36.39	39.39	31.69	28.3	21.86
Merged-chr6-72390551-3	chr6	72390051	72391051	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016794, exon 1 of 3)	5' UTR (NM_016794, exon 1 of 3)	116.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	375.84	356.19	326.51	335.33	320.49	335.98	396.07	423.6	246.69
Merged-chr17-65737310-3	chr17	65736805	65737805	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	35447.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	81.8	92.16	60.12	107.95	99.37	98.87	113.01	126.02	40.59
Merged-chr15-10873754-3	chr15	10873256	10874256	+	989.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44705.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	49.2	78.79	45.32	51.28	35.92	37.78	77.1	88.88	36.85
Merged-chr15-102326168-3	chr15	102325680	102326680	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027044)	promoter-TSS (NM_027044)	64.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	113.27	130.86	106.37	78.27	85.37	101.28	101.39	86.66	103.05
Merged-chr12-59219051-3	chr12	59218539	59219539	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033156, exon 1 of 4)	exon (NM_001033156, exon 1 of 4)	444.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	184.77	182.01	162.79	191.62	144.15	172.81	197.51	156.09	120.53
Merged-chr11-109440058-3	chr11	109439559	109440559	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040680)	promoter-TSS (NR_040680)	-19.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	31.46	18.43	20.35	44.53	44.32	45.01	42.25	33.16	11.87
Merged-chr6-46281195-3	chr6	46280691	46281691	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 10 of 23)	L1MB1|LINE|L1	-963205.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	17.16	19.35	13.87	28.34	8.86	9.65	12.67	8.84	11.24
Merged-chr13-51107024-3	chr13	51106505	51107505	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283029, intron 1 of 5)	MTE2b|LTR|ERVL-MaLR	5458.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	6.29	8.75	11.1	6.07	9.8	8.84	12.67	12.38	10.62
Merged-chr10-69257754-3	chr10	69257251	69258251	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	44557.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	64.64	80.18	77.7	41.83	42.92	22.51	62.31	53.5	43.72
Merged-chr18-75503564-3	chr18	75503088	75504088	+	989.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-11057.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	139.01	144.23	130.42	95.81	84.9	147.09	132.02	124.25	129.9
Merged-chr1-36072110-3	chr1	36071618	36072618	+	989.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	3718.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	89.24	99.99	65.67	166.66	111.03	102.88	132.02	126.46	56.83
Merged-chr17-30574678-2	chr17	30574195	30575195	+	989.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	1592.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	81.8	114.27	95.27	23.62	17.73	56.27	137.3	141.94	95.55
Merged-chr16-22124484-2	chr16	22123999	22124999	+	989.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	38800.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	12.59	5.99	5.55	6.07	6.06	0.0	15.84	5.31	2.5
Merged-chr4-141767032-3	chr4	141766541	141767541	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172338, intron 11 of 14)	intron (NM_172338, intron 11 of 14)	20366.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	158.46	154.82	142.44	159.23	110.56	120.57	176.38	184.38	97.43
Merged-chr16-55790545-3	chr16	55790025	55791025	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31613.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	26.89	21.2	24.97	34.41	13.53	26.53	33.8	22.11	33.72
Merged-chr2-69856576-3	chr2	69856077	69857077	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4985.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	10.3	10.6	14.8	12.14	7.0	11.25	8.45	1.33	16.24
Merged-chr3-48080832-3	chr3	48080326	48081326	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54067.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	9.72	9.68	9.25	14.84	10.73	11.25	24.29	13.27	17.49
Merged-chr3-79567405-3	chr3	79566913	79567913	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152118)	promoter-TSS (NR_152118)	266.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	226.53	166.34	140.59	240.2	204.33	169.6	207.01	152.99	91.18
Merged-chr7-134556210-3	chr7	134555698	134556698	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-114489.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	6.29	15.21	10.17	15.52	8.86	20.9	4.22	4.86	7.49
Merged-chr16-26689917-3	chr16	26689445	26690445	+	989.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152416, intron 4 of 12)	intron (NR_152416, intron 4 of 12)	65557.0	NR_105063	100504628.0	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	2.86	7.37	7.4	3.37	3.27	3.22	3.17	3.54	3.75
Merged-chr12-4477208-5	chr12	4476704	4477704	+	989.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010881)	promoter-TSS (NM_010881)	-22.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	64.07	64.97	49.95	67.47	79.31	102.08	79.21	63.67	51.21
Merged-chr2-164680077-3	chr2	164679576	164680576	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5031.0	NM_001012704	408190.0	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	43.48	46.08	40.7	68.82	55.51	76.36	91.89	90.64	50.59
Merged-chr5-115187400-3	chr5	115186881	115187881	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310712, intron 1 of 5)	intron (NM_001310712, intron 1 of 5)	-1260.0	NM_001310715	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	16.02	11.52	0.0	9.45	6.53	1.61	8.45	3.54	3.75
Merged-chr9-46120112-3	chr9	46119638	46120638	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	107318.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	15.45	11.52	0.92	14.84	13.53	1.61	16.9	13.27	6.87
Merged-chr12-91008956-1	chr12	91008456	91009456	+	989.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-36892.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	18.31	13.82	14.8	20.24	23.33	28.13	10.56	11.5	11.24
Merged-chr3-27188393-3	chr3	27187903	27188903	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	5399.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	110.41	116.58	51.8	127.52	104.03	90.83	94.0	95.07	30.6
Merged-chr2-32967517-3	chr2	32967008	32968008	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4207.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	569.19	517.46	305.23	560.69	645.18	339.2	424.59	618.59	247.94
Merged-chr6-124496170-3	chr6	124495657	124496657	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181344, intron 2 of 5)	HAL1|LINE|L1	3044.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	17.16	27.19	29.6	26.31	26.12	38.58	30.63	27.41	17.49
Merged-chr12-40606158-1	chr12	40605658	40606658	+	989.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	160105.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	28.6	21.2	15.72	26.99	22.39	18.49	17.96	15.48	25.61
Merged-chr1-37559841-3	chr1	37559367	37560367	+	989.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18851.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	30.89	37.78	41.62	24.96	23.79	46.62	40.14	52.18	28.73
Merged-chr17-87299170-3	chr17	87298672	87299672	+	989.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	16286.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	18.31	14.28	7.4	11.47	11.66	12.06	5.28	9.73	5.62
Merged-chr18-61090850-3	chr18	61090347	61091347	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14725.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	48.62	43.77	43.47	42.51	27.52	27.33	52.81	48.2	45.59
Merged-chr1-20829538-3	chr1	20829042	20830042	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-9230.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	17.16	27.19	32.37	12.14	23.33	24.92	24.29	22.55	21.23
Merged-chr15-66813588-3	chr15	66813078	66814078	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18251.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	181.34	219.79	180.37	180.15	157.21	151.92	144.7	149.45	133.65
Merged-chr17-28015592-3	chr17	28015094	28016094	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	64990.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	27.46	18.89	17.57	47.23	24.72	20.9	9.51	19.9	13.74
Merged-chr2-32876107-3	chr2	32875611	32876611	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146119)	promoter-TSS (NM_146119)	-23.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	24.6	8.75	16.65	35.09	20.53	36.97	15.84	13.27	6.25
Merged-chr4-127061164-3	chr4	127060662	127061662	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356311)	promoter-TSS (NM_001356311)	-8.0	NM_001356311	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	17.73	24.42	31.45	26.31	18.66	30.54	34.85	28.3	18.74
Merged-chr13-51401363-3	chr13	51400849	51401849	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7269.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	93.82	59.44	61.05	101.88	83.04	109.32	105.62	93.3	54.96
Merged-chr5-53826139-3	chr5	53825635	53826635	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	16508.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	14.87	4.15	9.25	7.42	11.66	0.0	14.79	5.31	0.0
Merged-chr9-124142039-3	chr9	124141522	124142522	+	989.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20479.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	66.93	85.71	54.57	94.46	69.51	68.32	110.9	104.35	93.05
Merged-chr1-171233298-5	chr1	171232873	171233873	+	989.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 1 of 4)	YREP_Mm|Unknown|Unknown	976.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	124.71	160.35	99.89	175.43	127.36	155.93	254.54	295.81	102.42
Merged-chr12-79864367-3	chr12	79863859	79864859	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60374.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	20.59	13.82	8.32	15.52	16.79	6.43	7.39	3.98	5.62
Merged-chr8-88294150-3	chr8	88293653	88294653	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-51.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	29.75	35.94	52.72	47.9	36.39	32.96	55.98	56.16	37.47
Merged-chr13-58688450-3	chr13	58687958	58688958	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73853.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	37.18	34.56	41.62	29.01	13.06	65.91	26.4	26.53	29.98
Merged-chr4-62847435-3	chr4	62846932	62847932	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118142.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	32.61	16.59	4.62	33.74	12.13	6.43	38.02	23.43	16.86
Merged-chr17-46140027-3	chr17	46139519	46140519	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029338, intron 2 of 4)	intron (NM_029338, intron 2 of 4)	4179.0	NM_029338	75564.0	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	3.43	9.22	5.55	7.42	5.13	10.45	12.67	3.98	8.74
Merged-chr7-143021540-3	chr7	143021032	143022032	+	989.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110354)	TTS (NR_110354)	15873.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	255.14	220.72	147.07	193.64	134.82	134.23	194.34	290.95	150.51
Merged-chr10-86889774-3	chr10	86889269	86890269	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 41 of 68)	Lx8|LINE|L1	110764.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	41.76	39.17	44.4	49.25	51.78	62.7	40.14	32.28	48.09
Merged-chr15-99406514-1	chr15	99406014	99407014	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001171035, intron 7 of 9)	intron (NM_001171035, intron 7 of 9)	13295.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	32.61	34.1	52.72	1.35	2.33	2.41	1.06	3.1	1.25
Merged-chr2-166275565-3	chr2	166275051	166276051	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 1 of 2)	intron (NR_033467, intron 1 of 2)	1643.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	8.01	13.36	3.7	14.84	18.66	8.84	10.56	3.1	6.25
Merged-chr12-32698986-3	chr12	32698483	32699483	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121352.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	20.59	5.53	11.1	13.49	11.2	6.43	11.62	10.17	7.49
Merged-chr4-14863619-1	chr4	14863119	14864119	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028264)	promoter-TSS (NM_028264)	-600.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	100.11	76.49	70.3	97.83	62.51	59.48	83.44	69.86	54.96
Merged-chr9-32633168-1	chr9	32632668	32633668	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62874.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.14	1.38	1.85	8.77	3.27	4.82	1.06	3.98	4.37
Merged-chr13-19794672-1	chr13	19794172	19795172	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181754, intron 2 of 4)	ORR1B1|LTR|ERVL-MaLR	29585.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	1.72	3.69	0.0	8.1	5.6	4.82	2.11	2.21	3.12
Merged-chr11-101226357-3	chr11	101225833	101226833	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007970, intron 1 of 20)	CpG	130.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	38.9	29.49	25.9	79.62	97.5	102.88	65.48	61.46	43.72
Merged-chr19-21913911-3	chr19	21913408	21914408	+	989.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135568.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	109.83	135.47	71.22	99.86	94.7	114.94	91.89	109.22	91.81
Merged-chr9-22467885-1	chr9	22467385	22468385	+	989.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018739, intron 1 of 5)	CpG	471.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	101.25	65.43	70.3	105.93	80.71	102.88	79.21	73.4	50.59
Merged-chr17-84860114-3	chr17	84859620	84860620	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-69334.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	75.51	90.31	84.17	27.66	19.59	17.68	26.4	17.24	12.49
Merged-chr17-70848463-3	chr17	70847967	70848967	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	1323.0	NM_001164076	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	205.94	278.77	127.64	207.14	179.14	177.64	190.11	254.69	179.86
Merged-chr11-54811441-3	chr11	54810944	54811944	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8475.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	23.45	8.29	7.4	25.64	7.93	1.61	16.9	5.31	5.0
Merged-chr17-84267928-3	chr17	84267421	84268421	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	L1M3|LINE|L1	-79974.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	94.39	88.01	56.42	109.98	84.44	53.05	77.1	77.38	47.46
Merged-chr6-22474272-3	chr6	22473771	22474771	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118190.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	30.89	35.94	46.25	33.74	29.39	32.15	26.4	23.88	33.72
Merged-chr19-46395772-3	chr19	46395266	46396266	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016860)	promoter-TSS (NM_016860)	-31.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	124.71	141.46	138.74	91.09	92.84	83.59	157.37	140.17	96.18
Merged-chr5-67821441-3	chr5	67820919	67821919	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	C-rich|Low_complexity|Low_complexity	26012.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	128.71	159.89	86.95	154.51	148.82	108.51	154.2	206.93	69.95
Merged-chr11-101580046-3	chr11	101579558	101580558	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 23 of 23)	intron (NM_008676, intron 23 of 23)	-2184.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	80.66	52.99	34.22	63.42	45.72	57.87	61.26	52.18	42.47
Merged-chr5-123039259-3	chr5	123038770	123039770	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347456, exon 3 of 4)	exon (NM_001347456, exon 3 of 4)	7746.0	NM_029112	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	13.16	10.6	11.1	15.52	9.8	22.51	29.57	30.07	23.73
Merged-chr7-79743118-3	chr7	79742631	79743631	+	988.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037927)	promoter-TSS (NM_001037927)	0.0	NR_153403	18631.0	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	15.45	17.97	16.65	16.19	27.99	8.84	21.12	10.61	18.74
Merged-chr5-149692712-2	chr5	149692251	149693251	+	988.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	14494.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	8.01	9.68	5.55	6.07	7.93	5.63	1.06	0.88	3.75
Merged-chr2-59184279-3	chr2	59183785	59184785	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	23435.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	205.37	223.94	118.39	228.73	181.01	157.54	228.14	312.17	118.66
Merged-chr17-4994381-3	chr17	4993891	4994891	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085355)	promoter-TSS (NM_001085355)	-683.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	159.6	133.17	158.17	149.79	108.7	119.76	160.54	130.44	71.2
Merged-chr10-24641945-3	chr10	24641450	24642450	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 25 of 25)	exon (NM_008813, exon 25 of 25)	46508.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	166.47	160.35	124.87	185.55	161.41	153.52	211.24	184.83	96.18
Merged-chr13-56334491-3	chr13	56333976	56334976	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-28424.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	70.36	90.31	49.95	101.88	95.63	121.37	61.26	64.56	50.59
Merged-chr14-121907433-3	chr14	121906914	121907914	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 3 of 8)	intron (NM_026861, intron 3 of 8)	8360.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	65.79	76.03	63.82	66.8	68.11	75.56	46.47	57.48	50.59
Merged-chr13-67729146-3	chr13	67728652	67729652	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145622)	promoter-TSS (NM_145622)	21.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	28.6	58.98	52.72	41.16	56.45	77.97	133.08	104.79	36.22
Merged-chr19-34548160-3	chr19	34547659	34548659	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2535.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	5.72	4.61	1.85	5.4	2.8	0.0	8.45	3.1	3.75
Merged-chr15-26360537-3	chr15	26360041	26361041	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	51493.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	12.01	16.13	18.5	40.48	27.52	20.09	34.85	30.07	29.35
Merged-chr2-51013237-3	chr2	51012723	51013723	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103539.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	36.04	33.64	20.35	35.76	17.73	7.23	36.97	33.16	13.74
Merged-chr11-106973192-3	chr11	106972693	106973693	+	988.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26332.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	32.04	43.77	52.72	58.03	36.39	31.35	91.89	87.11	56.83
Merged-chr3-104481509-3	chr3	104481016	104482016	+	988.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025067, intron 9 of 17)	intron (NM_001025067, intron 9 of 17)	30402.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	15.45	5.07	3.7	10.12	3.27	4.82	4.22	3.98	16.24
Merged-chr10-79533372-3	chr10	79532904	79533904	+	988.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302389, intron 1 of 5)	CpG	383.0	NM_001302442	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	19.45	9.22	22.2	20.92	10.26	12.06	11.62	8.4	9.99
Merged-chr6-129501141-2	chr6	129500640	129501640	+	988.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138648, intron 2 of 7)	intron (NM_138648, intron 2 of 7)	6025.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	13.16	8.29	8.32	18.22	11.66	24.92	4.22	2.21	3.12
Merged-chr16-21477273-1	chr16	21476773	21477773	+	988.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 17 of 46)	intron (NM_001081366, intron 17 of 46)	54155.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	7.44	9.22	5.55	13.49	8.4	19.29	8.45	3.98	1.25
Merged-chr2-167751745-3	chr2	167751212	167752212	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60535.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	65.79	42.39	36.07	60.05	31.72	45.01	48.58	37.14	48.71
Merged-chr14-66179148-3	chr14	66178660	66179660	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	34664.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	10.87	6.45	9.25	3.37	5.13	11.25	16.9	4.86	7.49
Merged-chr5-114597857-3	chr5	114597352	114598352	+	988.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	B4|SINE|B4	29601.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	15.45	23.5	12.95	20.24	36.39	40.99	26.4	29.18	6.25
Merged-chr10-80988226-3	chr10	80987717	80988717	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	13148.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	5.72	3.23	3.7	8.1	1.4	5.63	7.39	8.84	5.0
Merged-chr19-55587920-3	chr19	55587420	55588420	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	114284.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	36.61	33.18	37.0	53.98	25.66	36.17	27.46	26.53	28.1
Merged-chr8-20550209-3	chr8	20549732	20550732	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-64695.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	12.59	12.44	3.7	14.84	12.6	1.61	27.46	24.76	3.75
Merged-chr9-65196642-3	chr9	65196149	65197149	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U5|snRNA|snRNA	-18041.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	130.43	137.31	34.22	190.95	162.34	115.75	180.61	160.95	82.44
Merged-chr13-97240480-3	chr13	97240036	97241036	+	988.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007930)	promoter-TSS (NM_007930)	-569.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	80.09	75.11	65.67	41.83	36.39	44.21	39.08	43.77	44.34
Merged-chr1-60070881-3	chr1	60070386	60071386	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27021.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	17.73	17.05	24.97	24.96	19.59	16.88	26.4	13.71	27.48
Merged-chr5-143537256-3	chr5	143536757	143537757	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9226.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.29	2.76	5.55	17.54	6.53	3.22	9.51	3.98	0.0
Merged-chr15-89177327-3	chr15	89176825	89177825	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-3374.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	181.34	163.58	120.24	146.41	120.36	118.16	173.21	222.41	130.53
Merged-chr15-27628014-3	chr15	27627525	27628525	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	2668.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	21.17	9.68	11.1	20.92	9.33	9.65	28.52	6.19	7.49
Merged-chr7-138392851-3	chr7	138392350	138393350	+	988.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183289, intron 3 of 11)	intron (NM_183289, intron 3 of 11)	4880.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	6.29	4.61	7.4	4.72	3.73	0.0	3.17	2.65	0.0
Merged-chr2-133554916-1	chr2	133554416	133555416	+	988.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007553, intron 2 of 2)	intron (NM_007553, intron 2 of 2)	2757.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.0	1.84	0.92	5.4	2.33	4.82	2.11	4.86	3.12
Merged-chr16-57123287-3	chr16	57122789	57123789	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	1575.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	21.17	20.27	12.95	17.54	9.8	9.65	20.07	11.5	3.12
Merged-chr2-167504059-3	chr2	167503600	167504600	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153838, intron 1 of 4)	CpG	657.0	NM_001360930	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	227.11	188.92	234.01	201.74	181.47	179.24	238.7	231.7	171.75
Merged-chr13-46180876-3	chr13	46180389	46181389	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92832.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	34.9	49.3	24.97	31.71	31.72	45.01	40.14	39.35	56.21
Merged-chr2-167007778-3	chr2	167007296	167008296	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7517.0	NM_153065	228889.0	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	92.67	68.2	49.02	123.47	101.7	44.21	66.54	78.71	29.35
Merged-chr2-90904683-3	chr2	90904156	90905156	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311116)	promoter-TSS (NM_001311116)	65.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	121.28	146.07	128.57	128.87	145.08	147.9	133.08	158.74	86.81
Merged-chr15-99045079-3	chr15	99044603	99045603	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-10071.0	NM_001163588	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	10.87	4.15	5.55	30.36	8.4	3.22	8.45	13.71	7.49
Merged-chr11-21564040-3	chr11	21563506	21564506	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 4 of 8)	intron (NM_001316675, intron 4 of 8)	7928.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	64.64	95.84	84.17	81.64	69.04	55.46	83.44	103.02	51.84
Merged-chr9-73039643-3	chr9	73039065	73040065	+	988.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308425)	promoter-TSS (NM_001308425)	134.0	NM_018889	55981.0	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	28.03	44.24	24.05	33.06	39.19	35.37	47.53	46.87	38.1
Merged-chr4-135918983-4	chr4	135918486	135919486	+	988.650818	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009924, exon 2 of 2)	3' UTR (NM_009924, exon 2 of 2)	-1740.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	103.54	118.42	57.35	116.05	93.3	102.88	125.69	125.13	66.2
Merged-chr19-45675971-3	chr19	45675461	45676461	+	988.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15768.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	62.35	47.46	39.77	44.53	53.18	34.56	86.61	66.77	21.23
Merged-chr17-71096713-3	chr17	71096204	71097204	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	77147.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	37.18	19.81	24.05	37.11	31.72	25.72	17.96	12.38	13.74
Merged-chr13-111808648-3	chr13	111808131	111809131	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011945, exon 1 of 20)	exon (NM_011945, exon 1 of 20)	362.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	399.29	221.64	293.21	345.46	180.07	191.3	286.23	148.13	151.14
Merged-chr16-91522699-3	chr16	91522206	91523206	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4838.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	227.68	152.06	104.52	172.73	153.48	165.58	180.61	168.02	111.17
Merged-chr9-45282686-3	chr9	45282206	45283206	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13557.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	12.59	9.68	11.1	22.27	19.59	3.22	21.12	10.61	9.37
Merged-chr2-18063902-3	chr2	18063433	18064433	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045539)	promoter-TSS (NR_045539)	-652.0	NM_001252560	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	359.82	336.83	215.51	255.72	225.79	137.45	217.57	239.65	165.5
Merged-chr7-27838579-3	chr7	27838076	27839076	+	988.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011762)	promoter-TSS (NM_011762)	-8.0	NM_011762	22717.0	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	19.45	30.41	20.35	22.94	28.46	34.56	20.07	19.01	24.36
Merged-chr12-65037710-3	chr12	65037209	65038209	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177806, intron 1 of 13)	intron (NM_177806, intron 1 of 13)	1375.0	NM_177806	328110.0	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	39.47	57.14	39.77	43.18	40.59	57.07	55.98	59.25	28.1
Merged-chr18-60523941-3	chr18	60523451	60524451	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2203.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	92.67	154.36	103.59	69.5	84.44	139.06	64.43	63.67	57.46
Merged-chr10-61167550-3	chr10	61167033	61168033	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4431.0	NM_001017419	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	37.76	23.5	16.65	48.58	32.66	21.7	61.26	53.5	23.11
Merged-chr4-122860208-3	chr4	122859721	122860721	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 12 of 12)	intron (NM_007598, intron 12 of 12)	23994.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	22.88	16.13	22.2	20.92	23.33	38.58	24.29	27.86	23.73
Merged-chr11-3195755-3	chr11	3195250	3196250	+	988.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2287.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	49.77	67.27	110.07	64.77	79.77	102.08	81.33	76.05	163.0
Merged-chr14-66281052-3	chr14	66280558	66281558	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172498)	promoter-TSS (NM_172498)	-6.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	89.81	87.55	74.0	56.0	78.84	54.66	96.11	85.78	65.58
Merged-chr19-46864283-3	chr19	46863774	46864774	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 4 of 6)	intron (NM_001102471, intron 4 of 6)	98077.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	43.48	40.09	22.2	55.33	67.18	73.95	47.53	30.07	8.74
Merged-chr15-67905458-2	chr15	67904942	67905942	+	988.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353414.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	10.3	6.45	11.1	8.1	9.33	13.66	14.79	9.73	7.49
Merged-chr10-29338849-3	chr10	29338359	29339359	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110195, intron 5 of 5)	intron (NM_001110195, intron 5 of 5)	18854.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	2.86	9.22	7.4	4.72	4.67	7.23	5.28	2.21	9.99
Merged-chr11-95827684-3	chr11	95827189	95828189	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	3189.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	79.52	76.03	67.52	80.97	60.18	59.48	70.76	86.66	44.34
Merged-chr9-98333377-3	chr9	98332869	98333869	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	36799.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	17.73	18.89	11.1	41.16	37.79	27.33	24.29	37.58	8.74
Merged-chr2-170345669-3	chr2	170345176	170346176	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10685.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	82.38	64.51	84.17	75.57	65.31	94.85	87.66	65.44	48.09
Merged-chr2-38497756-3	chr2	38497255	38498255	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13942.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	16.02	14.75	20.35	8.77	9.33	15.27	16.9	11.05	13.74
Merged-chr15-59816334-3	chr15	59815823	59816823	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-21364.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	41.19	47.46	43.47	50.6	30.79	32.96	44.36	42.45	14.36
Merged-chr19-58116502-3	chr19	58116001	58117001	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	65334.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	53.77	57.14	46.25	70.17	40.12	64.3	53.87	38.91	26.85
Merged-chr10-60282834-3	chr10	60282338	60283338	+	988.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-1623.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	181.34	198.14	138.74	188.25	196.4	192.11	211.24	344.01	131.15
Merged-chr9-45298266-3	chr9	45297775	45298775	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20825.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	147.59	111.05	79.55	141.69	81.17	121.37	159.48	124.25	89.31
Merged-chr4-65604985-3	chr4	65604461	65605461	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161782)	promoter-TSS (NM_001161782)	-25.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	21.74	22.58	7.4	32.39	20.06	29.74	28.52	22.55	19.98
Merged-chr7-126695354-3	chr7	126694855	126695855	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175103)	promoter-TSS (NM_175103)	428.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	37.76	18.89	37.0	36.43	22.86	43.4	31.69	34.49	29.35
Merged-chr14-66846613-3	chr14	66846114	66847114	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21986.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	53.2	41.93	46.25	64.1	27.52	35.37	87.66	58.37	87.43
Merged-chr13-54504250-3	chr13	54503781	54504781	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176987, intron 1 of 9)	CpG	476.0	NM_176987	319719.0	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	51.48	24.88	25.9	47.23	31.72	45.82	45.42	26.09	26.85
Merged-chr7-92903817-3	chr7	92903328	92904328	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 2 of 8)	intron (NM_028243, intron 2 of 8)	28575.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	6.86	8.29	5.55	7.42	4.2	8.04	3.17	4.42	2.5
Merged-chr9-116161079-3	chr9	116160599	116161599	+	988.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	14264.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	62.93	65.89	53.65	58.03	45.25	53.05	62.31	51.29	40.59
Merged-chr11-3199102-8	chr11	3198704	3199704	+	988.430542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3149.0	NM_001166548	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	38.33	78.33	84.17	47.23	84.9	112.53	97.17	58.37	161.13
Merged-chr15-84351492-3	chr15	84350984	84351984	+	988.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25365.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	14.87	9.22	11.1	16.87	12.13	13.66	24.29	23.43	13.74
Merged-chr4-98436982-3	chr4	98436488	98437488	+	988.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 11 of 19)	intron (NM_001005784, intron 11 of 19)	25961.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	35.47	47.92	16.65	62.75	50.85	51.44	68.65	74.73	18.74
Merged-chr8-57800555-3	chr8	57800041	57801041	+	988.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 10 of 11)	intron (NM_175032, intron 10 of 11)	-147486.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	41.19	58.52	24.05	22.94	20.06	20.9	33.8	53.94	32.48
Merged-chr8-18564807-3	chr8	18564315	18565315	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30316.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	3.43	7.37	0.0	1.35	1.87	4.02	3.17	1.77	1.87
Merged-chr1-170868673-3	chr1	170868160	170869160	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081304)	promoter-TSS (NM_001081304)	-889.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	104.11	118.88	27.75	97.16	90.04	36.17	92.94	100.81	36.22
Merged-chr14-122913082-3	chr14	122912572	122913572	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155287)	promoter-TSS (NR_155287)	42.0	NR_155286	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	11.44	3.23	2.77	14.84	17.73	12.86	9.51	3.98	7.49
Merged-chr3-21841014-3	chr3	21840575	21841575	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-235577.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	14.3	3.23	7.4	5.4	3.73	0.0	11.62	5.31	4.37
Merged-chr7-45370658-3	chr7	45370153	45371153	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011698)	promoter-TSS (NM_011698)	-89.0	NM_011698	22342.0	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	6.29	1.38	9.25	5.4	2.33	0.0	2.11	1.77	8.12
Merged-chr8-95001846-3	chr8	95001349	95002349	+	988.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	-15843.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	6.86	9.68	0.92	6.75	3.27	6.43	6.34	3.54	5.0
Merged-chr6-32479615-6	chr6	32479077	32480077	+	988.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-31564.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	117.27	141.92	87.87	163.96	161.41	106.1	151.03	180.4	58.08
Merged-chr9-54734075-2	chr9	54733568	54734568	+	988.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025376, intron 1 of 10)	intron (NM_001025376, intron 1 of 10)	481.0	NM_023191	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	172.76	176.94	77.7	172.73	154.88	90.83	168.99	171.56	86.18
Merged-chr16-59600395-3	chr16	59599906	59600906	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36539.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	58.92	68.2	81.4	77.59	66.24	115.75	96.11	93.3	97.43
Merged-chr5-36575363-1	chr5	36574863	36575863	+	988.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	7034.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	117.84	130.86	108.22	118.08	97.5	118.96	170.05	202.07	86.81
Merged-chr13-8643502-1	chr13	8643002	8644002	+	988.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	227542.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	26.89	12.44	9.25	80.29	81.64	65.11	31.69	36.7	23.73
Merged-chr2-89117477-3	chr2	89116973	89117973	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4963.0	NM_146902	258904.0	Mm.330377	NM_146902	ENSMUSG00000075102	Olfr1221	MOR233-3	olfactory receptor 1221	protein-coding	13.16	19.35	11.1	22.27	13.53	14.47	7.39	6.19	9.99
Merged-chr13-98761957-3	chr13	98761445	98762445	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 11 of 25)	intron (NM_172591, intron 11 of 25)	53504.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	77.23	86.63	49.95	41.16	49.45	50.64	97.17	112.75	54.33
Merged-chr16-64935097-1	chr16	64934597	64935597	+	988.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008310, intron 2 of 2)	MLT1A1|LTR|ERVL-MaLR	83096.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.0	1.84	0.92	4.05	6.53	0.0	12.67	8.84	8.74
Merged-chr9-21164155-3	chr9	21163642	21164642	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1572.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	24.6	14.75	15.72	12.82	7.93	10.45	16.9	8.84	8.12
Merged-chr1-15799122-3	chr1	15798617	15799617	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6529.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	32.61	39.17	42.55	14.17	18.19	23.31	5.28	8.84	5.0
Merged-chr3-148325146-3	chr3	148324629	148325629	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	629506.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	22.88	29.95	27.75	21.59	17.26	38.58	32.74	25.65	33.1
Merged-chr6-142715088-3	chr6	142714595	142715595	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12821.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	24.03	24.88	24.05	18.22	14.46	40.19	25.35	28.74	28.73
Merged-chr5-24424247-1	chr5	24423747	24424747	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009207)	promoter-TSS (NM_009207)	-717.0	NM_007668	12568.0	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	232.25	283.84	217.36	175.43	264.04	217.83	258.77	380.71	172.37
Merged-chr2-103627379-3	chr2	103626893	103627893	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	B3|SINE|B2	61083.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	14.3	4.15	1.85	8.77	0.47	3.22	3.17	3.98	1.25
Merged-chr6-86525654-6	chr6	86525173	86526173	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011865, exon 1 of 1)	exon (NM_011865, exon 1 of 1)	516.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	306.62	301.81	203.49	310.37	275.24	237.12	331.64	250.71	172.37
Merged-chr9-118705762-3	chr9	118705248	118706248	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	MTD|LTR|ERVL-MaLR	-5944.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	60.64	75.11	49.02	105.26	83.04	80.38	84.49	120.71	88.68
Merged-chr12-83950664-3	chr12	83950186	83951186	+	988.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	78.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	77.23	78.79	106.37	95.81	82.11	90.83	105.62	98.6	58.71
Merged-chr1-136569559-6	chr1	136569074	136570074	+	988.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-55327.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	175.62	157.13	129.49	193.64	142.29	140.66	247.15	313.94	164.88
Merged-chr4-126815101-3	chr4	126814600	126815600	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035525, intron 4 of 23)	intron (NM_001035525, intron 4 of 23)	61330.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	29.75	35.48	42.55	38.46	29.86	65.11	41.19	39.8	28.73
Merged-chr8-115582239-3	chr8	115581754	115582754	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	124640.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	40.04	41.93	64.75	58.03	47.12	77.16	38.02	45.1	30.6
Merged-chr11-21015117-3	chr11	21014674	21015674	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76150.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	62.93	69.58	24.05	68.82	48.05	40.99	68.65	49.08	37.47
Merged-chr6-83268403-3	chr6	83267894	83268894	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166067, intron 10 of 24)	intron (NM_001166067, intron 10 of 24)	31019.0	NM_001166067	232156.0	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	17.16	13.82	14.8	26.99	13.06	14.47	8.45	11.05	5.0
Merged-chr14-32812623-3	chr14	32812125	32813125	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163616, intron 4 of 4)	intron (NM_001163616, intron 4 of 4)	-21337.0	NM_001164485	105511.0	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	21.74	11.98	13.87	22.27	10.73	20.9	10.56	13.71	8.74
Merged-chr13-49183934-3	chr13	49183432	49184432	+	988.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3615.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	25.17	15.67	25.9	17.54	16.79	27.33	29.57	17.69	24.98
Merged-chr5-122637095-2	chr5	122636597	122637597	+	988.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6814.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	44.05	16.13	0.0	61.4	20.99	8.04	9.51	11.05	3.75
Merged-chr11-106920727-4	chr11	106920151	106921151	+	988.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025481)	promoter-TSS (NM_025481)	64.0	NM_025481	66313.0	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	151.59	103.22	115.62	161.26	103.1	132.63	146.81	83.13	77.44
Merged-chr16-21310977-3	chr16	21310505	21311505	+	988.246033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14133.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	48.05	33.18	25.9	58.7	52.72	67.52	53.87	52.18	16.86
Merged-chr2-180705306-3	chr2	180704798	180705798	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-3196.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	47.48	47.46	29.6	37.78	25.66	24.11	35.91	24.32	14.36
Merged-chr13-52822890-3	chr13	52822397	52823397	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65692.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	23.45	16.13	25.9	56.68	69.04	114.14	67.6	25.2	19.98
Merged-chr10-80692953-3	chr10	80692431	80693431	+	988.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8889.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	249.99	225.78	123.94	271.91	175.41	155.93	228.14	295.81	126.78
Merged-chr15-75085626-3	chr15	75085140	75086140	+	988.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	26297.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	85.24	177.86	258.06	47.9	134.82	132.63	86.61	100.81	176.74
Merged-chr1-65089201-3	chr1	65088714	65089714	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6924.0	NM_144761	12965.0	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	5.72	3.69	12.95	10.12	7.0	8.04	5.28	11.05	9.99
Merged-chr13-67082230-3	chr13	67081735	67082735	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012448)	promoter-TSS (NM_001012448)	-690.0	NM_001292066	432769.0	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	49.77	46.08	47.17	39.13	56.91	41.8	38.02	50.41	51.84
Merged-chr14-43921923-3	chr14	43921423	43922423	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053112)	TTS (NM_053112)	1445.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	65.21	48.84	16.65	45.21	23.33	25.72	52.81	29.18	24.36
Merged-chr12-79156985-3	chr12	79156478	79157478	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009705)	TTS (NM_009705)	15480.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	36.61	41.47	22.2	212.54	159.55	125.39	51.75	45.54	16.24
Merged-chr12-104236092-3	chr12	104235586	104236586	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353613)	promoter-TSS (NM_001353613)	-61.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	49.2	33.18	49.02	14.17	9.33	4.82	81.33	47.75	22.48
Merged-chr11-94548454-3	chr11	94547960	94548960	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013381, intron 2 of 8)	intron (NM_001013381, intron 2 of 8)	747.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	66.93	55.75	42.55	43.86	36.85	29.74	44.36	42.45	28.73
Merged-chr12-73589318-3	chr12	73588817	73589817	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	L1ME2|LINE|L1	4521.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	4.58	19.81	5.55	35.09	18.66	11.25	14.79	17.24	2.5
Merged-chr1-55026133-3	chr1	55025646	55026646	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031179, intron 1 of 24)	intron (NM_031179, intron 1 of 24)	1332.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	135.58	180.17	123.02	103.23	142.29	109.32	129.91	131.32	106.79
Merged-chr15-28159122-3	chr15	28158591	28159591	+	988.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44675.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	13.73	21.2	13.87	9.45	10.26	7.23	14.79	10.61	3.75
Merged-chr1-52726929-3	chr1	52726445	52727445	+	988.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 1 of 7)	CpG	373.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	12.59	6.45	4.62	7.42	4.2	8.84	12.67	0.88	3.75
Merged-chr4-139614670-3	chr4	139614153	139615153	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 7 of 8)	intron (NM_001205173, intron 7 of 8)	-8241.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	35.47	32.25	20.35	10.12	6.53	20.09	24.29	15.03	25.61
Merged-chr12-12263566-3	chr12	12263049	12264049	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	1410.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	182.49	172.79	117.47	133.59	130.62	120.57	168.99	165.37	105.55
Merged-chr18-46599068-3	chr18	46598539	46599539	+	988.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	1335.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	205.37	240.07	135.04	190.27	160.48	117.35	243.98	311.29	117.41
Merged-chr16-94625931-3	chr16	94625416	94626416	+	988.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	14497.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	40.04	26.73	32.37	41.83	31.26	17.68	31.69	42.01	28.73
Merged-chr1-34464413-1	chr1	34463913	34464913	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	intron (NM_011206, intron 5 of 14)	4667.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	160.75	183.39	114.69	172.73	96.1	145.49	176.38	217.1	138.65
Merged-chr4-32555772-3	chr4	32555268	32556268	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	L1MA9|LINE|L1	15894.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	41.76	53.45	46.25	82.32	65.31	68.32	32.74	30.07	28.73
Merged-chr10-53374383-3	chr10	53373872	53374872	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204983, intron 1 of 12)	L2a|LINE|L2	5479.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	35.47	36.86	32.37	29.69	26.12	40.19	30.63	37.58	25.61
Merged-chr7-145264353-1	chr7	145263853	145264853	+	988.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 13 of 22)	LTR41B|LTR|ERVL	19658.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	5.15	9.68	5.55	3.37	4.67	8.84	2.11	1.33	6.25
Merged-chr17-32193208-2	chr17	32192722	32193722	+	988.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-3752.0	NM_001347341	71932.0	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9|EH3	epoxide hydrolase 3	protein-coding	2.29	4.15	8.32	8.77	5.6	4.82	19.01	14.59	15.61
Merged-chr11-9337353-3	chr11	9336849	9337849	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	intron (NM_178259, intron 27 of 61)	145407.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	36.04	41.93	9.25	61.4	37.79	32.15	77.1	87.11	20.61
Merged-chr1-43466130-3	chr1	43465640	43466640	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	20389.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	12.01	11.98	1.85	38.46	40.59	16.08	46.47	38.91	22.48
Merged-chr2-68793747-3	chr2	68793243	68794243	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67698.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	28.03	36.4	27.75	30.36	31.26	38.58	29.57	39.35	38.1
Merged-chr8-46928888-3	chr8	46928393	46929393	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57994.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	41.19	34.1	24.05	58.7	21.46	39.39	40.14	37.58	26.23
Merged-chr9-110997433-3	chr9	110996906	110997906	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-7693.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	5.72	3.69	5.55	6.07	5.6	4.02	3.17	1.77	3.75
Merged-chr8-115570512-3	chr8	115570022	115571022	+	988.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136372.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	18.88	24.88	21.27	15.52	14.0	25.72	15.84	19.01	23.73
Merged-chr8-80315007-3	chr8	80314501	80315501	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179044.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	29.17	28.11	24.05	30.36	27.06	33.76	39.08	24.32	28.1
Merged-chr1-144007558-3	chr1	144007058	144008058	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3409.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	32.61	33.64	13.87	37.11	28.92	7.23	15.84	21.22	16.24
Merged-chr5-25011299-3	chr5	25010810	25011810	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-15557.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	9.15	2.76	3.7	6.75	4.2	2.41	8.45	5.31	0.0
Merged-chr9-64771385-3	chr9	64770863	64771863	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33607.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	60.07	48.38	39.77	66.12	55.98	55.46	28.52	47.75	12.49
Merged-chr2-103604413-3	chr2	103603911	103604911	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	38101.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	18.31	11.06	12.95	7.42	2.33	3.22	6.34	9.29	1.25
Merged-chr13-23584492-3	chr13	23583959	23584959	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178194, exon 2 of 2)	3' UTR (NM_178194, exon 2 of 2)	1511.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	85.81	111.05	51.8	66.8	67.64	86.81	74.99	83.57	57.46
Merged-chr2-160269509-3	chr2	160268989	160269989	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58005.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	42.33	56.68	56.42	56.0	35.92	59.48	50.7	44.66	33.1
Merged-chr6-72735363-3	chr6	72734856	72735856	+	987.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	53689.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	36.61	53.91	23.12	33.74	28.92	36.17	114.07	118.5	54.96
Merged-chr11-54028188-3	chr11	54027679	54028679	+	987.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-75.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	60.07	54.83	26.82	75.57	78.37	79.58	40.14	46.43	20.61
Merged-chr12-80064005-2	chr12	80063490	80064490	+	987.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49023.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	4.0	4.61	0.0	14.84	5.6	11.25	17.96	7.96	3.75
Merged-chr1-165643209-3	chr1	165642702	165643702	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8661.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	214.52	164.96	161.87	237.5	174.94	179.24	179.55	229.48	116.79
Merged-chr13-73461685-3	chr13	73461197	73462197	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5686.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	11.44	8.75	16.65	13.49	3.73	10.45	12.67	13.27	9.99
Merged-chr4-14865647-3	chr4	14865162	14866162	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	1443.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	38.33	25.8	19.42	43.86	26.59	18.49	29.57	34.05	12.49
Merged-chr18-46963598-3	chr18	46963101	46964101	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4725.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	36.04	38.25	26.82	45.21	58.78	53.05	38.02	43.77	46.22
Merged-chr1-180884445-3	chr1	180883938	180884938	+	987.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	17.16	9.22	19.42	7.42	6.53	9.65	8.45	7.07	6.25
Merged-chr4-117836614-4	chr4	117836100	117837100	+	987.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008135, intron 1 of 13)	CpG	1342.0	NM_008135	14664.0	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	10.87	6.45	7.4	7.42	7.46	11.25	10.56	6.19	9.99
Merged-chr11-69036008-3	chr11	69035498	69036498	+	987.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281465, intron 22 of 22)	intron (NM_001281465, intron 22 of 22)	-9639.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	47.48	27.19	25.9	42.51	20.06	32.15	25.35	22.11	25.61
Merged-chr15-76198822-3	chr15	76198359	76199359	+	987.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	547.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	14.3	8.29	18.5	21.59	8.86	20.09	16.9	5.31	4.37
Merged-chr4-53806630-2	chr4	53806116	53807116	+	987.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19429.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	7.44	6.91	3.7	5.4	7.0	13.66	0.0	2.21	0.62
Merged-chr5-139405686-3	chr5	139405180	139406180	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177000)	promoter-TSS (NM_177000)	-707.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	290.6	217.49	199.79	321.17	248.18	212.2	296.79	350.64	157.38
Merged-chr11-53560149-1	chr11	53559649	53560649	+	987.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7220.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	2.86	1.38	0.92	10.12	7.93	4.82	3.17	2.65	6.25
Merged-chr7-4925127-3	chr7	4924624	4925624	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173008)	promoter-TSS (NM_173008)	-720.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	8.01	4.61	1.85	19.57	1.87	9.65	16.9	5.31	11.87
Merged-chr3-20018241-3	chr3	20017731	20018731	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 8 of 16)	MTD|LTR|ERVL-MaLR	17079.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	58.92	78.79	46.25	86.36	60.18	61.09	81.33	76.05	41.84
Merged-chr13-74807967-3	chr13	74807425	74808425	+	987.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009817)	promoter-TSS (NM_009817)	35.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	40.62	52.07	43.47	89.06	83.04	69.13	70.76	74.28	50.59
Merged-chr6-67267480-2	chr6	67266983	67267983	+	987.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113565, intron 1 of 7)	CpG	504.0	NM_025814	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	78.94	88.01	152.62	84.34	100.3	108.51	138.36	85.34	88.68
Merged-chr18-12955927-4	chr18	12955467	12956467	+	987.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14126.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	145.87	147.91	146.14	145.74	175.87	179.24	183.78	164.49	89.93
Merged-chr15-96287551-4	chr15	96287176	96288176	+	987.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175251, exon 1 of 21)	5' UTR (NM_175251, exon 1 of 21)	154.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	209.37	201.36	227.54	192.29	170.28	143.88	205.96	152.55	144.27
Merged-chr5-110387108-3	chr5	110386600	110387600	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028596)	promoter-TSS (NM_028596)	27.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	38.9	26.26	38.85	24.96	12.13	11.25	41.19	28.74	28.1
Merged-chr10-10408346-3	chr10	10407846	10408846	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 13 of 36)	intron (NM_001127353, intron 13 of 36)	63968.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	11.44	22.12	14.8	15.52	15.39	13.66	9.51	10.61	11.24
Merged-chr12-80435169-3	chr12	80434706	80435706	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177267, intron 1 of 8)	CpG	1395.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	117.84	108.28	107.29	121.45	92.84	118.96	139.42	107.0	79.94
Merged-chr12-85885203-3	chr12	85884690	85885690	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 12 of 32)	MTD|LTR|ERVL-MaLR	60240.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	19.45	13.36	21.27	14.17	8.86	6.43	8.45	6.19	6.87
Merged-chr10-95533533-3	chr10	95533031	95534031	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	18369.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	134.43	111.97	104.52	101.88	81.17	102.88	130.97	155.2	63.08
Merged-chr13-100408464-3	chr13	100407966	100408966	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008670, exon 16 of 16)	3' UTR (NM_008670, exon 16 of 16)	44398.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	17.73	19.81	18.5	33.06	20.06	23.31	25.35	15.92	18.11
Merged-chr12-73304860-3	chr12	73304384	73305384	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037717, intron 3 of 15)	intron (NM_001037717, intron 3 of 15)	18036.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	46.34	41.01	51.8	29.69	31.26	32.15	46.47	36.7	31.85
Merged-chr7-88128649-3	chr7	88128155	88129155	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-149430.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	41.76	59.44	47.17	52.63	31.72	53.85	44.36	62.79	41.84
Merged-chr1-179645894-3	chr1	179645380	179646380	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-22351.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	6.86	1.84	3.7	4.72	2.8	1.61	2.11	1.77	1.25
Merged-chr8-70213194-3	chr8	70212675	70213675	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007570)	promoter-TSS (NM_001007570)	-894.0	NM_001007570	73095.0	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	283.74	242.83	148.92	201.07	165.14	98.87	275.66	331.63	129.9
Merged-chr6-127258882-3	chr6	127258365	127259365	+	987.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49102.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.72	6.45	0.0	11.47	2.33	1.61	3.17	3.98	0.0
Merged-chr4-72200016-4	chr4	72199497	72200497	+	987.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285529, exon 1 of 20)	exon (NM_001285529, exon 1 of 20)	896.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	160.18	165.88	140.59	187.57	172.14	183.26	155.26	131.32	118.04
Merged-chr5-38480224-3	chr5	38479701	38480701	+	987.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001102414, exon 1 of 12)	5' UTR (NM_001102414, exon 1 of 12)	105.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	22.88	15.67	16.65	31.04	23.79	20.9	43.3	47.31	26.23
Merged-chr7-80628850-3	chr7	80628338	80629338	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-7179.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	15.45	10.14	20.35	19.57	16.33	29.74	31.69	16.8	10.62
Merged-chr12-99616373-3	chr12	99615891	99616891	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	MLTR14|LTR|ERV1	11583.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	22.88	22.12	30.52	18.22	12.13	14.47	59.15	48.64	25.61
Merged-chr7-110372708-3	chr7	110372219	110373219	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 19 of 40)	intron (NM_177324, intron 19 of 40)	151016.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	34.32	29.03	48.1	35.76	20.53	36.17	26.4	28.3	28.73
Merged-chr12-80785246-3	chr12	80784755	80785755	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5277.0	NM_178682	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	22.31	23.5	20.35	18.22	14.46	22.51	20.07	17.24	17.49
Merged-chr7-29769901-3	chr7	29769387	29770387	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	1335.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	47.48	48.84	19.42	33.06	23.33	15.27	16.9	19.01	8.74
Merged-chr7-109838812-3	chr7	109838305	109839305	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020052, intron 7 of 21)	intron (NM_020052, intron 7 of 21)	26874.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	13.73	8.75	5.55	19.57	4.2	2.41	4.22	10.61	3.75
Merged-chr5-64835477-3	chr5	64834983	64835983	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31960.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	76.08	67.27	42.55	47.9	37.79	42.6	40.14	49.96	15.61
Merged-chr11-34773714-3	chr11	34773157	34774157	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	10248.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	32.04	32.25	43.47	39.13	25.66	31.35	38.02	26.53	23.73
Merged-chr11-77520789-3	chr11	77520313	77521313	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026185)	TTS (NM_026185)	5696.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	26.89	32.72	34.22	32.39	20.99	28.94	27.46	32.72	26.85
Merged-chr7-80027141-3	chr7	80026697	80027697	+	987.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	CpG	969.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	72.65	64.97	128.57	78.94	60.65	82.79	101.39	60.58	69.95
Merged-chr13-47215113-3	chr13	47214633	47215633	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21130.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	71.51	93.08	78.62	91.09	120.83	143.88	91.89	86.22	61.2
Merged-chr11-76589317-3	chr11	76588781	76589781	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11542.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	217.95	197.22	120.24	242.9	227.66	205.77	226.02	291.39	120.53
Merged-chr10-62199142-3	chr10	62198618	62199618	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-4891.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	32.61	41.47	31.45	32.39	35.92	53.05	40.14	45.99	17.49
Merged-chr2-77238791-3	chr2	77238312	77239312	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 3 of 17)	intron (NM_175465, intron 3 of 17)	41780.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	8.58	14.75	8.32	17.54	8.86	5.63	3.17	8.84	6.25
Merged-chr2-177206497-3	chr2	177205997	177206997	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205541.0	NM_001362250	628147.0	Mm.374080	NM_001362250		Gm2004	100039000	predicted gene 2004	protein-coding	8.58	10.6	13.87	23.62	13.06	4.82	11.62	17.69	7.49
Merged-chr8-13647858-3	chr8	13647379	13648379	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	29708.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	84.09	95.84	78.62	109.98	86.3	102.08	80.27	129.11	51.21
Merged-chr12-31967754-3	chr12	31967263	31968263	+	987.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 6 of 10)	intron (NM_011158, intron 6 of 10)	-17518.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	3.43	5.07	3.7	4.72	0.0	3.22	5.28	0.88	2.5
Merged-chr7-35064468-2	chr7	35063993	35064993	+	987.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7927.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	141.3	141.92	125.79	158.56	118.03	150.31	152.09	126.9	88.68
Merged-chr18-46613369-2	chr18	46612868	46613868	+	987.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15664.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	24.6	35.94	19.42	56.68	77.44	32.15	41.19	38.03	23.73
Merged-chr15-34047120-2	chr15	34046614	34047614	+	987.616699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35605.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	61.78	60.82	29.6	56.0	55.05	41.8	77.1	61.02	44.34
Merged-chr18-70531029-3	chr18	70530540	70531540	+	987.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136090)	promoter-TSS (NM_001136090)	-719.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	204.8	367.71	164.64	154.51	234.19	129.41	358.05	481.08	162.38
Merged-chr3-27863533-3	chr3	27863024	27864024	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32844.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	63.5	69.12	47.17	89.06	71.84	53.05	65.48	60.58	34.97
Merged-chr2-60046223-3	chr2	60045714	60046714	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	79526.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	29.17	23.96	19.42	39.81	25.19	18.49	12.67	12.82	16.24
Merged-chr12-111166122-3	chr12	111165603	111166603	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	-267.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	176.76	143.3	98.97	143.04	83.97	118.96	153.15	115.41	58.08
Merged-chr2-143093863-3	chr2	143093340	143094340	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15447.0	NM_020595	57329.0	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	36.61	71.42	27.75	7.42	11.2	8.84	4.22	4.86	3.12
Merged-chr2-130490992-3	chr2	130490515	130491515	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	40737.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	83.52	68.66	52.72	220.63	120.36	151.92	101.39	86.22	71.82
Merged-chr19-56727356-3	chr19	56726848	56727848	+	987.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4976.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	86.38	88.93	69.37	107.95	84.44	93.24	97.17	114.52	72.45
Merged-chr13-44869619-3	chr13	44869125	44870125	+	987.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 3 of 17)	LSU-rRNA_Hsa|rRNA|rRNA	132471.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	22.31	16.13	19.42	4.72	7.93	10.45	12.67	6.19	6.87
Merged-chr11-103019060-2	chr11	103018545	103019545	+	987.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1898.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	9.15	6.91	12.95	67.47	52.72	39.39	79.21	73.4	39.35
Merged-chr8-70608459-3	chr8	70608008	70609008	+	987.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133772)	promoter-TSS (NM_133772)	-194.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	155.03	131.32	131.34	164.63	115.23	91.63	183.78	159.18	89.93
Merged-chr1-163758020-3	chr1	163757516	163758516	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21567.0	NM_001305643	16579.0	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	8.01	5.99	3.7	12.82	2.33	3.22	7.39	3.98	3.75
Merged-chr13-21974329-3	chr13	21973827	21974827	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6854.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	101.25	163.12	95.27	74.22	108.7	94.85	106.67	156.09	104.3
Merged-chr15-67479488-3	chr15	67478979	67479979	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	252710.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	15.45	11.06	12.95	29.69	15.39	23.31	14.79	7.52	12.49
Merged-chr7-75701961-3	chr7	75701469	75702469	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	intron (NM_029332, intron 16 of 36)	-146369.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	131.0	156.21	79.55	122.8	76.51	70.73	118.29	118.94	84.31
Merged-chr6-31077501-3	chr6	31076994	31077994	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14401.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	36.61	41.93	23.12	51.95	41.05	49.03	64.43	50.85	28.1
Merged-chr4-132748935-3	chr4	132748451	132749451	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133888, intron 1 of 7)	intron (NM_133888, intron 1 of 7)	8220.0	NM_133888	100340.0	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	53.77	36.4	32.37	34.41	20.99	36.97	40.14	30.51	17.49
Merged-chr19-12011787-3	chr19	12011317	12012317	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24923.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	220.24	236.38	151.69	162.61	155.81	114.94	235.53	282.99	138.02
Merged-chr11-116784403-3	chr11	116783890	116784890	+	987.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8883.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	90.38	99.07	61.97	87.04	59.25	80.38	6.34	7.52	5.0
Merged-chr11-104231322-3	chr11	104230830	104231830	+	987.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010838)	promoter-TSS (NM_010838)	-106.0	NM_001038609	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	32.04	11.52	9.25	3.37	3.73	1.61	5.28	1.77	9.99
Merged-chr8-107478162-3	chr8	107477661	107478661	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 4 of 23)	intron (NM_025830, intron 4 of 23)	41763.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	17.16	17.97	23.12	20.24	17.73	7.23	16.9	14.15	5.0
Merged-chr5-99248139-3	chr5	99247678	99248678	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	B3A|SINE|B2	4749.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	208.8	174.18	124.87	202.42	125.49	143.88	163.71	174.21	121.16
Merged-chr15-6705755-3	chr15	6705254	6706254	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2627.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	32.04	25.8	24.05	33.06	24.26	14.47	16.9	20.78	21.23
Merged-chr6-108214733-3	chr6	108214243	108215243	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	1647.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	9.15	5.53	1.85	12.82	6.06	12.86	14.79	7.96	11.24
Merged-chr3-109341749-3	chr3	109341246	109342246	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1063.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	44.05	24.88	44.4	41.83	30.32	41.8	35.91	20.34	16.86
Merged-chr11-29692223-3	chr11	29691715	29692715	+	987.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194053)	promoter-TSS (NM_194053)	-683.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	34.9	31.33	23.12	34.41	37.79	36.97	13.73	22.11	16.24
Merged-chr4-8515650-3	chr4	8515156	8516156	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19988.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	5.72	10.6	4.62	3.37	5.6	8.04	2.11	3.98	1.25
Merged-chr16-4920795-3	chr16	4920308	4921308	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 9 of 17)	intron (NM_001357062, intron 9 of 17)	-18303.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	33.18	39.63	36.07	35.76	34.52	42.6	19.01	33.16	27.48
Merged-chr1-60974953-3	chr1	60974454	60975454	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2960.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	60.07	79.72	46.25	61.4	67.64	98.06	86.61	103.47	70.57
Merged-chr2-180276065-3	chr2	180275574	180276574	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2609.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	3.43	1.84	1.85	8.77	5.13	8.04	5.28	4.42	8.74
Merged-chr7-81199960-3	chr7	81199460	81200460	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13844.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	96.11	85.71	60.12	104.58	84.44	93.24	101.39	99.05	49.34
Merged-chr7-24531411-3	chr7	24530916	24531916	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153134, exon 2 of 3)	exon (NM_153134, exon 2 of 3)	768.0	NM_153134	210146.0	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	110.41	82.48	54.57	85.01	50.38	58.68	77.1	64.11	43.72
Merged-chr12-84176334-3	chr12	84175855	84176855	+	987.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17660.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	259.71	188.0	198.87	217.93	153.01	196.93	183.78	192.78	126.15
Merged-chr7-127777681-2	chr7	127777179	127778179	+	987.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178029, intron 1 of 18)	CpG	290.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	148.73	107.82	78.62	135.62	101.7	97.26	147.87	82.24	69.95
Merged-chr8-61451073-2	chr8	61450588	61451588	+	987.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36646.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	4.0	6.45	7.4	57.35	70.91	64.3	58.09	86.66	51.84
Merged-chr5-20932802-3	chr5	20932297	20933297	+	987.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	PB1|SINE|Alu	-18192.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	42.33	33.64	22.2	35.09	22.39	28.13	34.85	38.03	14.99
Merged-chr15-74939468-3	chr15	74938982	74939982	+	987.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-15569.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	98.39	107.82	55.5	74.22	66.24	43.4	95.06	113.64	31.23
Merged-chr12-86242351-2	chr12	86241861	86242861	+	987.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 1 of 9)	intron (NM_027405, intron 1 of 9)	503.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	375.27	521.15	381.08	328.59	417.99	322.32	418.25	536.79	217.34
Merged-chr7-30265233-3	chr7	30264740	30265740	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146186, exon 9 of 33)	exon (NM_146186, exon 9 of 33)	-14854.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	23.45	36.4	57.35	30.36	27.99	34.56	23.24	21.22	23.73
Merged-chr19-29522959-3	chr19	29522443	29523443	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015567)	promoter-TSS (NR_015567)	661.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	280.31	244.22	258.06	262.47	200.13	237.12	258.77	249.38	151.76
Merged-chr14-102978809-4	chr14	102978321	102979321	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177715, exon 1 of 1)	3' UTR (NM_177715, exon 1 of 1)	3811.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	73.22	83.86	95.27	58.7	41.05	55.46	58.09	76.94	46.84
Merged-chr17-27027605-3	chr17	27027095	27028095	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	1032.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	111.55	104.6	86.02	93.79	90.04	114.14	146.81	152.55	55.58
Merged-chr8-111234617-3	chr8	111234101	111235101	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	24601.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	52.63	64.05	47.17	105.93	77.44	77.16	113.01	128.23	33.72
Merged-chr6-33969394-3	chr6	33968874	33969874	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	MTD|LTR|ERVL-MaLR	-60074.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	95.53	98.61	68.45	89.74	86.77	78.77	158.43	151.66	83.06
Merged-chr12-55648308-3	chr12	55647809	55648809	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	49392.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	37.76	55.29	16.65	36.43	49.92	32.15	51.75	44.22	34.97
Merged-chr6-115718430-3	chr6	115717933	115718933	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40566.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	74.37	87.55	20.35	61.4	43.39	15.27	38.02	37.14	16.86
Merged-chr15-79446401-3	chr15	79445890	79446890	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4247.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	121.85	70.5	52.72	112.0	62.51	76.36	127.8	80.92	98.05
Merged-chr1-43501998-4	chr1	43501517	43502517	+	987.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	56266.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	116.13	125.79	71.22	131.57	77.91	65.91	174.27	184.83	76.19
Merged-chr1-134060997-3	chr1	134060508	134061508	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18147.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	41.19	53.91	25.9	47.9	54.11	62.7	46.47	39.8	33.72
Merged-chr19-10881700-3	chr19	10881189	10882189	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134142)	promoter-TSS (NM_134142)	54.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	68.65	55.75	62.9	48.58	54.58	63.5	70.76	58.81	50.59
Merged-chr11-68443502-3	chr11	68443021	68444021	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	11396.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	26.31	25.34	16.65	24.96	27.99	27.33	23.24	12.38	9.37
Merged-chr10-100881858-3	chr10	100881341	100882341	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-140206.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	18.31	22.12	12.02	46.56	22.86	17.68	28.52	39.8	20.61
Merged-chr9-51077214-3	chr9	51076736	51077736	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033534)	promoter-TSS (NM_001033534)	-142.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	23.45	7.37	7.4	16.19	14.46	10.45	15.84	8.4	7.49
Merged-chr13-76256581-3	chr13	76256080	76257080	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128381.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	37.18	20.74	28.67	31.71	23.79	12.06	2.11	7.96	2.5
Merged-chr1-171057493-3	chr1	171056977	171057977	+	987.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356511, intron 3 of 4)	intron (NM_001356511, intron 3 of 4)	1917.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	17.73	25.8	24.05	20.92	16.79	16.08	44.36	30.95	34.97
Merged-chr13-41373033-3	chr13	41372517	41373517	+	987.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	-14016.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	44.62	47.92	40.7	34.41	30.32	42.6	50.7	41.12	36.22
Merged-chr7-48998263-5	chr7	48997742	48998742	+	987.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	39169.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	63.5	65.43	46.25	84.34	66.71	55.46	79.21	86.22	55.58
Merged-chr1-171502839-7	chr1	171502323	171503323	+	987.261902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-655.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	150.45	168.65	80.47	116.73	149.28	55.46	151.03	221.08	125.53
Merged-chr4-150913982-2	chr4	150913467	150914467	+	987.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4046.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	267.15	268.18	198.87	331.29	377.41	245.16	330.59	386.45	162.38
Merged-chr3-84666225-3	chr3	84665732	84666732	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177260)	promoter-TSS (NM_177260)	40.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	1.14	5.99	5.55	6.75	4.67	3.22	5.28	2.65	1.25
Merged-chr7-128237288-3	chr7	128236776	128237776	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146205)	promoter-TSS (NM_146205)	-81.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	170.47	199.52	132.27	174.08	174.94	192.11	168.99	212.68	131.78
Merged-chr3-157635854-3	chr3	157635358	157636358	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	68966.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	14.87	5.53	1.85	5.4	5.13	1.61	7.39	3.98	5.62
Merged-chr10-117822004-3	chr10	117821520	117822520	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 3 of 7)	intron (NM_024457, intron 3 of 7)	23954.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	44.62	49.3	61.97	67.47	50.38	81.99	59.15	56.16	44.97
Merged-chr13-5870959-3	chr13	5870452	5871452	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011803)	TTS (NM_011803)	9463.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	68.65	53.91	16.65	103.23	63.45	57.07	42.25	41.56	19.98
Merged-chr8-126824854-3	chr8	126824354	126825354	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24166.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	57.78	33.64	61.97	62.07	38.25	60.28	49.64	35.82	29.35
Merged-chr10-115328776-3	chr10	115328291	115329291	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER70B|LTR|ERVL	-13200.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	41.76	74.65	51.8	38.46	55.51	59.48	63.37	84.45	66.82
Merged-chr10-4346971-3	chr10	4346471	4347471	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	CpG	40504.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	2.86	4.61	1.85	10.12	2.33	2.41	2.11	3.98	9.37
Merged-chr11-17013127-3	chr11	17012625	17013625	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4407.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	14.3	9.22	12.95	10.8	8.86	3.22	5.28	10.17	9.37
Merged-chr6-6577807-3	chr6	6577305	6578305	+	987.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009169, intron 1 of 2)	MIRb|SINE|MIR	853.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	169.33	282.0	165.57	197.69	241.18	172.81	247.15	293.6	182.36
Merged-chr18-82867743-5	chr18	82867272	82868272	+	987.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11875.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	112.12	104.6	74.92	80.29	88.17	86.01	99.28	127.34	54.96
Merged-chr1-95665237-3	chr1	95664776	95665776	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	2318.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	30.32	11.98	3.7	20.24	7.93	12.06	12.67	12.38	5.0
Merged-chr6-97442179-3	chr6	97441680	97442680	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	URR1A|DNA|hAT-Charlie	17106.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	186.49	206.43	137.82	207.81	176.81	171.21	234.47	228.6	124.28
Merged-chr10-67072063-3	chr10	67071551	67072551	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	24937.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	131.0	127.64	90.65	133.59	88.64	95.65	120.41	128.23	69.95
Merged-chr1-36133776-3	chr1	36133263	36134263	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10550.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	101.83	83.4	70.3	282.03	189.4	169.6	235.53	244.08	92.43
Merged-chr11-55154678-3	chr11	55154156	55155156	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2950.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	123.56	70.5	83.25	74.22	60.18	126.19	103.51	90.2	90.56
Merged-chr7-109616553-3	chr7	109616072	109617072	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	-4.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	24.03	30.87	23.12	29.01	14.0	16.88	11.62	13.27	14.99
Merged-chr7-139212556-3	chr7	139212052	139213052	+	987.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027164)	promoter-TSS (NM_027164)	-436.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	291.18	380.61	191.47	262.47	304.16	187.28	200.68	234.35	134.9
Merged-chr11-87026692-2	chr11	87026193	87027193	+	987.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32931.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	58.35	50.69	62.9	118.08	111.03	132.63	120.41	116.73	102.42
Merged-chr6-97278344-5	chr6	97277865	97278865	+	987.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25585.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	21.17	17.05	20.35	31.04	18.66	24.92	30.63	25.65	8.74
Merged-chr17-55761223-3	chr17	55760712	55761712	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 2 of 16)	MERV1_LTR|LTR|ERV1	11228.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	31.46	30.87	22.2	37.11	21.93	28.13	29.57	34.93	10.62
Merged-chr10-94771608-3	chr10	94771065	94772065	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029852, intron 13 of 15)	intron (NM_029852, intron 13 of 15)	82775.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	13.16	11.52	7.4	18.89	9.8	4.82	20.07	22.11	11.24
Merged-chr13-55892482-3	chr13	55891993	55892993	+	987.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61068.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	8.58	6.45	1.85	3.37	1.87	1.61	7.39	1.77	1.25
Merged-chr13-100203557-2	chr13	100203056	100204056	+	987.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1434.0	NM_010872	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	11.44	7.37	9.25	29.01	9.33	32.15	41.19	19.9	40.59
Merged-chr6-146619673-2	chr6	146619167	146620167	+	987.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 5 of 11)	intron (NM_026281, intron 5 of 11)	14925.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	25.74	28.11	32.37	51.28	44.32	28.94	7.39	4.42	9.37
Merged-chr2-32506858-3	chr2	32506372	32507372	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28487.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	169.33	139.16	80.47	189.6	164.21	155.93	196.45	227.27	77.44
Merged-chr6-125254308-3	chr6	125253807	125254807	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-11218.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	97.25	101.83	75.85	114.7	86.77	122.18	120.41	134.86	94.3
Merged-chr11-99386053-3	chr11	99385544	99386544	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010660, exon 7 of 8)	exon (NM_010660, exon 7 of 8)	3320.0	NM_010660	16661.0	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	62.93	67.27	58.27	78.27	62.51	90.02	70.76	45.99	59.95
Merged-chr11-86257572-3	chr11	86257023	86258023	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	45.0	NM_027421	70422.0	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	45.76	58.98	39.77	46.56	63.45	65.11	66.54	56.6	25.61
Merged-chr8-46497763-3	chr8	46497265	46498265	+	987.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6799.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	41.19	21.66	11.1	77.59	40.59	16.08	55.98	43.77	19.36
Merged-chr1-87623819-3	chr1	87623305	87624305	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	3493.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	112.12	93.54	79.55	109.3	77.44	86.81	91.89	136.19	77.44
Merged-chr10-26375992-3	chr10	26375508	26376508	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-789.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	13.16	23.04	2.77	20.92	13.53	23.31	33.8	22.55	35.6
Merged-chr6-38940812-1	chr6	38940312	38941312	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21826.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	225.96	202.75	225.69	232.1	137.15	144.68	204.9	214.01	138.02
Merged-chr7-99468599-7	chr7	99468032	99469032	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028145, exon 2 of 7)	exon (NM_028145, exon 2 of 7)	2528.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	215.09	116.12	86.02	232.78	124.56	122.98	237.64	119.83	70.57
Merged-chr10-119066157-1	chr10	119065657	119066657	+	987.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15658.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	69.79	61.28	27.75	72.19	67.64	37.78	111.96	161.39	36.85
Merged-chr11-67588567-3	chr11	67588064	67589064	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 1 of 13)	intron (NM_001109657, intron 1 of 13)	2064.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	29.75	18.89	10.17	14.84	8.4	1.61	28.52	20.34	9.99
Merged-chr14-101654427-1	chr14	101653927	101654927	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	CpG-4702	460.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	34.32	19.35	14.8	60.72	34.06	18.49	52.81	28.74	14.99
Merged-chr3-154286591-1	chr3	154286091	154287091	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43969.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	6.86	5.53	4.62	8.77	6.06	9.65	16.9	11.94	3.12
Merged-chr4-155250016-3	chr4	155249533	155250533	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190445)	promoter-TSS (NM_001190445)	67.0	NR_033802	67513.0	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	54.92	64.97	85.1	44.53	60.65	86.81	76.05	67.21	60.58
Merged-chr17-6476114-1	chr17	6475614	6476614	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25120.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	30.32	29.03	17.57	43.18	45.25	49.83	8.45	15.48	3.75
Merged-chr2-11293395-1	chr2	11292895	11293895	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 16 of 17)	intron (NM_008859, intron 16 of 17)	-46094.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	1.14	1.84	5.55	2.7	3.73	4.02	2.11	1.77	5.0
Merged-chr13-101767337-3	chr13	101766822	101767822	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	CpG	895.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	165.32	174.18	160.02	172.05	178.21	169.6	175.33	204.28	142.39
Merged-chr2-52426863-2	chr2	52426351	52427351	+	987.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1977.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	6.86	8.29	8.32	12.14	7.46	6.43	14.79	9.29	8.74
Merged-chr2-180920545-1	chr2	180920045	180921045	+	987.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173761, intron 1 of 4)	CpG	391.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	328.36	340.52	211.81	298.23	303.7	199.34	291.51	213.57	143.64
Merged-chr6-124637252-3	chr6	124636741	124637741	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1156.0	NM_173864	317677.0	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	6.29	5.07	7.4	5.4	3.27	1.61	5.28	2.65	1.25
Merged-chr19-11102098-3	chr19	11101603	11102603	+	987.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 5 of 6)	intron (NM_027058, intron 5 of 6)	-21000.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	44.05	45.16	62.9	41.83	39.65	68.32	31.69	22.55	56.21
Merged-chr5-121711679-4	chr5	121711150	121712150	+	986.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009125)	promoter-TSS (NM_009125)	41.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	236.26	141.46	184.99	241.55	116.63	133.43	303.13	158.3	108.67
Merged-chr8-124219318-3	chr8	124218808	124219808	+	986.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	-12086.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	20.02	20.27	32.37	18.89	20.53	30.54	35.91	20.34	13.74
Merged-chr10-17550867-3	chr10	17550368	17551368	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172360.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	27.46	20.27	17.57	36.43	32.19	29.74	25.35	27.86	23.11
Merged-chr5-64382605-3	chr5	64382091	64383091	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85351.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	32.04	21.66	16.65	23.62	19.59	27.33	22.18	23.43	35.6
Merged-chr3-136742905-3	chr3	136742401	136743401	+	986.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	72835.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	8.01	5.99	12.02	10.12	4.2	6.43	3.17	7.07	11.24
Merged-chr12-101029206-5	chr12	101028700	101029700	+	986.9424439999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362342)	promoter-TSS (NM_001362342)	-309.0	NM_026681	68339.0	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	9.72	4.61	3.7	12.82	6.53	3.22	5.28	1.77	3.75
Merged-chr6-129230394-3	chr6	129229891	129230891	+	986.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7654.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	98.97	140.54	144.29	95.81	67.64	117.35	119.35	109.22	101.8
Merged-chr1-74369170-3	chr1	74368644	74369644	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033345, exon 10 of 10)	3' UTR (NM_001033345, exon 10 of 10)	-6059.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	242.55	278.31	135.04	292.83	226.26	183.26	292.56	364.79	196.73
Merged-chr1-165641602-3	chr1	165641111	165642111	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7070.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	110.98	103.22	75.85	99.86	99.83	81.18	104.56	145.03	63.08
Merged-chr5-106696032-3	chr5	106695537	106696537	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	CpG	793.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	211.66	208.27	158.17	244.25	194.53	210.59	205.96	157.41	129.28
Merged-chr2-57116793-3	chr2	57116292	57117292	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	-1754.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	18.88	11.52	7.4	70.17	34.06	40.99	47.53	19.46	8.74
Merged-chr8-68822916-3	chr8	68822411	68823411	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027590, intron 16 of 16)	intron (NM_027590, intron 16 of 16)	28982.0	NM_001293792	70885.0	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	44.05	51.61	67.52	39.81	42.92	57.87	43.3	46.87	46.84
Merged-chr11-101583307-3	chr11	101582803	101583803	+	986.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359325, intron 1 of 7)	intron (NM_001359325, intron 1 of 7)	1004.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	46.91	49.76	55.5	47.23	40.59	36.97	51.75	62.79	38.72
Merged-chr11-86580570-4	chr11	86580133	86581133	+	986.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3525.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	157.31	135.93	97.12	146.41	127.36	121.37	144.7	155.64	99.3
Merged-chr12-117736184-3	chr12	117735673	117736673	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 22 of 27)	RLTR42-int|LTR|ERVK	-107688.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.58	12.44	8.32	9.45	6.06	15.27	20.07	13.27	6.25
Merged-chr15-31342704-3	chr15	31342195	31343195	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25064.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	20.02	6.91	17.57	59.38	51.78	37.78	19.01	10.61	7.49
Merged-chr1-136582048-3	chr1	136581546	136582546	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42855.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	42.9	58.98	23.12	49.93	58.31	43.4	98.23	126.02	51.21
Merged-chr18-10531796-3	chr18	10531293	10532293	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 18 of 32)	intron (NM_001083628, intron 18 of 32)	78559.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	33.18	42.39	23.12	32.39	52.25	15.27	79.21	99.05	37.47
Merged-chr5-98033221-3	chr5	98032714	98033714	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2252.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	5.72	10.14	5.55	13.49	7.93	8.84	2.11	1.33	1.25
Merged-chr12-70713672-3	chr12	70713188	70714188	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111826.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	77.23	102.75	74.92	93.79	98.43	84.4	76.05	79.59	48.09
Merged-chr6-126940012-3	chr6	126939523	126940523	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138594)	promoter-TSS (NM_138594)	57.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	156.74	220.25	99.89	149.11	132.49	132.63	226.02	267.07	123.03
Merged-chr2-30407382-3	chr2	30406893	30407893	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007760, intron 6 of 13)	intron (NM_007760, intron 6 of 13)	8355.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	38.33	28.57	24.97	16.87	9.8	32.15	28.52	31.84	24.98
Merged-chr17-86732273-3	chr17	86731784	86732784	+	986.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21580.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	9.72	6.45	4.62	11.47	11.2	20.9	6.34	4.86	4.37
Merged-chr14-33319725-3	chr14	33319232	33320232	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	CpG	91292.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	9.72	5.99	14.8	14.84	6.53	5.63	10.56	1.77	6.87
Merged-chr6-113978464-3	chr6	113977964	113978964	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-43783.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	6.29	10.14	11.1	8.1	10.26	12.86	8.45	4.86	6.25
Merged-chr13-48528701-3	chr13	48528200	48529200	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7414.0	NR_029656	387247.0		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	5.72	6.91	3.7	4.05	1.87	0.0	2.11	0.88	0.62
Merged-chr3-122246196-3	chr3	122245680	122246680	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	CpG	623.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	94.39	114.27	119.32	100.53	91.44	123.78	89.78	81.36	75.57
Merged-chr11-119524665-3	chr11	119524148	119525148	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23172.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	5.15	5.99	1.85	8.77	4.67	3.22	5.28	3.1	0.0
Merged-chr17-56814560-3	chr17	56814068	56815068	+	986.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	16440.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	12.01	12.44	0.0	15.52	5.13	3.22	7.39	5.31	2.5
Merged-chr3-108958124-3	chr3	108957639	108958639	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001078646, intron 6 of 7)	intron (NM_001078646, intron 6 of 7)	17582.0	NM_001078646	66715.0	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	9.72	5.07	15.72	6.07	3.27	5.63	8.45	1.77	5.0
Merged-chr4-40301273-3	chr4	40300771	40301771	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11961.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	5.15	6.45	0.0	7.42	8.4	3.22	6.34	4.42	5.0
Merged-chr3-67515612-3	chr3	67515115	67516115	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164763)	promoter-TSS (NM_001164763)	-92.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	20.59	8.29	12.95	16.87	7.46	6.43	9.51	6.63	2.5
Merged-chr1-151457308-3	chr1	151456806	151457806	+	986.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026876, intron 13 of 14)	intron (NM_026876, intron 13 of 14)	14913.0	NR_106150	102466847.0		NR_106150	ENSMUSG00000106406	Mir7682	mmu-mir-7682	microRNA 7682	ncRNA	12.59	8.29	11.1	12.14	6.53	8.04	4.22	7.52	15.61
Merged-chr2-168579275-3	chr2	168578763	168579763	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	11102.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	23.45	17.51	3.7	22.27	17.26	11.25	9.51	6.63	7.49
Merged-chr1-86532544-3	chr1	86532043	86533043	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5986.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	9.72	6.91	6.47	7.42	4.67	4.82	1.06	4.42	5.62
Merged-chr3-146149821-3	chr3	146149312	146150312	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026656)	promoter-TSS (NM_026656)	-21.0	NM_026656	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	108.69	83.86	83.25	90.41	58.31	51.44	81.33	77.38	38.1
Merged-chr1-182539529-3	chr1	182539029	182540029	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21919.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	46.34	32.25	36.07	14.84	10.73	11.25	13.73	16.8	7.49
Merged-chr16-50530305-3	chr16	50529804	50530804	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1802.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	42.9	48.84	35.15	60.05	56.45	61.89	45.42	63.23	31.85
Merged-chr18-32834210-1	chr18	32833710	32834710	+	986.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045381, intron 1 of 4)	Lx8|LINE|L1	-3015.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	1.72	2.76	1.85	20.24	19.13	16.08	3.17	3.98	5.62
Merged-chr2-174437117-3	chr2	174436647	174437647	+	986.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022325, intron 2 of 5)	intron (NM_022325, intron 2 of 5)	1892.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	327.21	275.55	195.17	230.75	175.87	163.17	201.73	233.46	99.3
Merged-chr13-60710156-1	chr13	60709656	60710656	+	986.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	RSINE1|SINE|B4	76208.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	16.02	11.52	24.05	31.04	22.86	27.33	13.73	5.31	9.37
Merged-chr14-45677417-3	chr14	45676890	45677890	+	986.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19247.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	30.89	34.56	31.45	42.51	23.33	68.32	35.91	34.05	21.86
Merged-chr13-23438080-3	chr13	23437560	23438560	+	986.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7043.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	30.89	36.4	28.67	24.29	27.52	21.7	30.63	41.56	26.85
Merged-chr3-107081461-3	chr3	107080977	107081977	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20090.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	7.44	3.69	5.55	8.77	3.27	6.43	4.22	3.98	2.5
Merged-chr10-128458531-3	chr10	128458069	128459069	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106183)	promoter-TSS (NR_106183)	-111.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	163.61	223.94	120.24	151.81	147.88	137.45	192.23	216.22	89.31
Merged-chr11-62005091-3	chr11	62004593	62005593	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48330.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	85.81	84.32	69.37	104.58	98.9	123.78	64.43	63.67	54.96
Merged-chr17-33929483-3	chr17	33928967	33929967	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-427.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	77.8	82.02	78.62	66.8	78.84	106.9	63.37	91.97	101.17
Merged-chr12-70969972-3	chr12	70969473	70970473	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4650.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	98.39	169.57	74.92	95.81	96.1	63.5	121.46	169.79	61.83
Merged-chr10-128493083-3	chr10	128492636	128493636	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317220)	promoter-TSS (NM_001317220)	-127.0	NM_001317219	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	223.1	217.49	182.22	202.42	173.07	171.21	215.46	254.25	122.41
Merged-chr8-26693953-3	chr8	26693451	26694451	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	130472.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	16.59	10.14	17.57	29.01	18.19	20.9	79.21	85.78	64.95
Merged-chr18-5097441-3	chr18	5096932	5097932	+	986.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153153, exon 24 of 35)	exon (NM_153153, exon 24 of 35)	50843.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	25.17	16.59	8.32	67.47	42.92	39.39	22.18	15.92	8.12
Merged-chr3-96221520-2	chr3	96221005	96222005	+	986.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175662)	promoter-TSS (NM_175662)	433.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	189.35	196.29	161.87	165.31	124.09	100.47	151.03	268.4	141.77
Merged-chr10-71349412-3	chr10	71348905	71349905	+	986.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1642.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	59.49	48.84	38.85	76.92	73.24	77.97	49.64	43.77	23.11
Merged-chr9-50459697-3	chr9	50459204	50460204	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34821.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	21.17	24.88	23.12	11.47	19.13	4.02	11.62	19.46	8.12
Merged-chr19-15924597-1	chr19	15924097	15925097	+	986.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205339)	promoter-TSS (NM_001205339)	25.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	13.16	6.91	3.7	31.71	20.06	24.11	12.67	8.4	0.0
Merged-chr6-146162797-3	chr6	146162295	146163295	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 52 of 56)	intron (NM_019923, intron 52 of 56)	228673.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	5.15	7.37	12.02	18.22	16.79	9.65	19.01	17.69	11.87
Merged-chr8-24400333-2	chr8	24399843	24400843	+	986.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38603.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	9.15	5.99	6.47	10.12	3.27	3.22	2.11	3.1	1.25
Merged-chr1-64690182-2	chr1	64689689	64690689	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038009, intron 1 of 1)	intron (NR_038009, intron 1 of 1)	470.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	92.1	94.92	79.55	64.77	91.9	69.93	78.16	108.33	68.7
Merged-chr7-128172688-3	chr7	128172191	128173191	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	26.89	38.25	14.8	40.48	32.19	36.17	27.46	17.69	13.74
Merged-chr8-33930793-4	chr8	33930330	33931330	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	-967.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	21.74	28.11	7.4	31.71	20.53	27.33	92.94	65.0	42.47
Merged-chr17-45554620-3	chr17	45554125	45555125	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1075.0	NM_008690	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	29.17	24.88	12.95	23.62	9.33	8.84	14.79	18.13	11.87
Merged-chr8-125720264-3	chr8	125719785	125720785	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13918.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	16.02	16.13	18.5	12.14	8.4	16.08	17.96	13.71	4.37
Merged-chr11-47398043-3	chr11	47397542	47398542	+	986.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18740.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	8.01	5.53	5.55	12.14	12.6	9.65	6.34	4.86	6.87
Merged-chr3-103383364-3	chr3	103382862	103383862	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104069.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	2.86	2.3	0.0	6.75	3.27	4.82	5.28	4.42	2.5
Merged-chr7-100494728-3	chr7	100494247	100495247	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 2 of 7)	intron (NM_011671, intron 2 of 7)	1389.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	326.64	354.34	142.44	410.23	407.73	149.5	248.2	356.39	127.4
Merged-chr11-75636721-3	chr11	75636224	75637224	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008916, intron 3 of 11)	intron (NM_008916, intron 3 of 11)	5704.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	103.54	85.25	88.8	87.71	68.58	114.14	96.11	114.08	73.69
Merged-chr8-126755908-3	chr8	126755408	126756408	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93112.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	60.64	44.24	44.4	81.64	39.65	45.82	35.91	26.97	10.62
Merged-chr3-8691950-3	chr3	8691444	8692444	+	986.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24906.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	26.31	14.75	7.4	15.52	19.13	16.08	10.56	7.52	6.25
Merged-chr7-38029416-2	chr7	38028917	38029917	+	986.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-9865.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	49.77	36.86	32.37	41.83	34.99	31.35	19.01	11.05	12.49
Merged-chr2-43748608-4	chr2	43748096	43749096	+	986.392822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153820)	promoter-TSS (NM_153820)	-228.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	30.89	50.69	32.37	38.46	47.58	35.37	63.37	62.35	37.47
Merged-chr5-138996077-3	chr5	138995586	138996586	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-11694	-1133.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	69.79	66.81	28.67	78.94	62.51	57.87	53.87	59.25	39.97
Merged-chr7-15948513-3	chr7	15948026	15949026	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153068)	TTS (NM_153068)	-2418.0	NM_133831	68077.0	Mm.277634	NM_133831	ENSMUSG00000041560	Nop53	5330430H08Rik|9430097C02Rik|AU041936|AW536441|Gltscr2|PICT-1|R74911	NOP53 ribosome biogenesis factor	protein-coding	10.3	5.53	6.47	9.45	1.4	2.41	4.22	5.31	12.49
Merged-chr6-99436483-3	chr6	99435960	99436960	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-1115.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	13.73	20.27	25.9	19.57	14.93	20.9	12.67	2.65	8.74
Merged-chr14-66232713-3	chr14	66232215	66233215	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18891.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	99.54	75.57	48.1	78.94	49.92	53.85	99.28	67.65	79.94
Merged-chr1-86228940-3	chr1	86228461	86229461	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	74181.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	121.85	118.88	82.32	141.69	134.35	120.57	86.61	76.94	74.32
Merged-chr13-56616552-3	chr13	56616070	56617070	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	intron (NR_155548, intron 2 of 16)	6984.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	18.31	18.43	20.35	23.62	15.39	28.13	15.84	11.05	16.24
Merged-chr17-43667210-3	chr17	43666719	43667719	+	986.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018887)	promoter-TSS (NM_018887)	-5.0	NM_001357123	74011.0	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	5.15	5.53	5.55	3.37	1.4	5.63	2.11	2.65	0.62
Merged-chr11-118103061-3	chr11	118102581	118103581	+	986.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 20 of 80)	intron (NM_001167746, intron 20 of 80)	26138.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.29	4.61	0.0	2.7	3.73	4.02	9.51	5.75	0.0
Merged-chr16-31029915-3	chr16	31029422	31030422	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	51510.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	49.2	32.25	27.75	64.1	43.39	60.28	46.47	31.39	28.1
Merged-chr2-25022278-3	chr2	25021793	25022793	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-32086.0	NM_001177654	56876.0	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	17.73	23.04	16.65	30.36	21.46	18.49	26.4	30.95	15.61
Merged-chr15-89196076-3	chr15	89195563	89196563	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027081, intron 1 of 19)	CpG	411.0	NM_027081	69440.0	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	155.03	121.65	165.57	94.46	100.77	127.0	115.12	102.58	111.17
Merged-chr10-62590365-3	chr10	62589856	62590856	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019553, intron 7 of 14)	intron (NM_019553, intron 7 of 14)	-11899.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	21.17	9.68	13.87	10.8	6.06	5.63	10.56	10.17	13.74
Merged-chr1-162573922-3	chr1	162573426	162574426	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016796, intron 1 of 7)	MIRc|SINE|MIR	3098.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	50.91	61.28	24.05	101.21	87.24	112.53	78.16	92.41	63.08
Merged-chr19-10690599-3	chr19	10690086	10691086	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1851.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	224.25	190.3	137.82	93.79	50.85	80.38	71.82	63.23	46.84
Merged-chr10-40435551-3	chr10	40435052	40436052	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 3 of 11)	intron (NM_198164, intron 3 of 11)	86244.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	4.0	6.45	7.4	4.05	5.13	6.43	6.34	4.42	1.87
Merged-chr8-95142606-3	chr8	95142072	95143072	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145831)	promoter-TSS (NM_001145831)	-32.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	40.04	41.47	36.07	35.09	40.59	36.17	40.14	35.82	33.72
Merged-chr5-140721016-1	chr5	140720516	140721516	+	986.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-3111.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	10.3	4.61	5.55	9.45	10.26	6.43	4.22	2.65	2.5
Merged-chr3-9947878-3	chr3	9947372	9948372	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64713.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	1.72	4.15	1.85	7.42	3.27	4.02	5.28	1.33	9.99
Merged-chr5-64370485-3	chr5	64369988	64370988	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	97454.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	26.89	39.17	32.37	43.18	34.99	39.39	27.46	35.37	33.72
Merged-chr4-13192355-3	chr4	13191724	13192724	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	285387.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	22.31	13.36	18.5	15.52	12.13	9.65	9.51	12.38	6.87
Merged-chr1-151343204-3	chr1	151342727	151343727	+	986.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1259.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	100.68	94.46	76.77	170.03	180.54	149.5	192.23	252.48	106.17
Merged-chr7-24387377-3	chr7	24386890	24387890	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12238.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	12.59	11.06	18.5	10.8	7.0	3.22	29.57	17.24	24.98
Merged-chr7-80207404-3	chr7	80206890	80207890	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	8949.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	64.64	32.25	42.55	60.05	30.32	33.76	39.08	40.68	14.36
Merged-chr16-94574168-3	chr16	94573682	94574682	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3275.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	21.17	25.8	20.35	31.04	28.46	17.68	24.29	30.07	14.99
Merged-chr5-43808178-3	chr5	43807675	43808675	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10718.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	12.01	6.45	1.85	16.19	7.0	5.63	13.73	3.1	11.87
Merged-chr6-39232853-3	chr6	39232365	39233365	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26092.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	96.68	65.89	73.07	110.65	65.78	89.22	79.21	84.45	70.57
Merged-chr11-115633103-3	chr11	115632609	115633609	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4814.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	76.66	66.35	106.37	114.7	46.65	86.81	114.07	117.17	68.07
Merged-chr17-34123665-3	chr17	34123160	34124160	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010386, intron 1 of 5)	intron (NM_010386, intron 1 of 5)	828.0	NM_010386	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	116.7	112.43	85.1	94.46	71.84	136.64	140.47	185.27	108.04
Merged-chr11-31812395-3	chr11	31811914	31812914	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	12133.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	5.72	12.9	7.4	16.87	9.8	6.43	22.18	4.86	8.74
Merged-chr17-83703485-3	chr17	83702968	83703968	+	986.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2695.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	55.49	49.3	15.72	26.99	25.66	32.96	22.18	31.39	23.11
Merged-chr11-20232208-3	chr11	20231667	20232667	+	986.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	17257.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	82.95	78.79	82.32	58.7	61.58	91.63	58.09	84.01	68.7
Merged-chr16-33917671-3	chr16	33917174	33918174	+	986.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	49364.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	32.61	40.55	49.02	47.9	37.79	66.71	34.85	49.96	36.22
Merged-chr1-173880344-2	chr1	173879863	173880863	+	986.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170853)	promoter-TSS (NM_001170853)	-176.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	21.74	31.79	21.27	80.97	82.57	64.3	73.93	76.94	39.97
Merged-chr5-92312479-2	chr5	92311995	92312995	+	986.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2471.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	14.3	5.53	0.0	4.05	4.2	4.02	10.56	11.5	11.24
Merged-chr11-51855631-3	chr11	51855110	51856110	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	intron (NM_001357588, intron 1 of 12)	1871.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	33.18	23.5	39.77	45.21	40.12	76.36	64.43	42.01	29.35
Merged-chr7-121333151-3	chr7	121332642	121333642	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59154.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	18.88	15.67	4.62	43.18	18.66	57.87	26.4	27.86	29.35
Merged-chr4-117210552-3	chr4	117210044	117211044	+	986.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27920.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	50.34	143.76	52.72	71.52	129.69	79.58	106.67	126.9	45.59
Merged-chr8-105264658-3	chr8	105264175	105265175	+	986.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015821)	promoter-TSS (NM_015821)	27.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	62.93	65.89	82.32	47.9	46.65	84.4	67.6	81.8	52.46
Merged-chr13-114387983-3	chr13	114387474	114388474	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010887, exon 1 of 5)	exon (NM_010887, exon 1 of 5)	120.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	56.63	59.9	39.77	42.51	41.99	53.85	77.1	65.88	32.48
Merged-chr10-95152795-3	chr10	95152309	95153309	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6984.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	61.78	91.7	37.0	84.34	82.11	66.71	40.14	55.27	41.22
Merged-chr1-54828044-3	chr1	54827562	54828562	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	98325.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	12.59	8.75	7.4	13.49	6.53	4.82	9.51	7.07	2.5
Merged-chr2-31084653-3	chr2	31084142	31085142	+	986.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	11858.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	88.1	61.75	51.8	85.01	51.32	63.5	60.2	84.01	57.46
Merged-chr7-79696742-2	chr7	79696250	79697250	+	986.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029835, exon 22 of 22)	exon (NM_029835, exon 22 of 22)	17436.0	NM_010626	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	17.16	10.6	31.45	21.59	8.86	16.08	13.73	15.92	13.74
Merged-chr4-136896694-4	chr4	136896190	136897190	+	986.142822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007572, exon 3 of 3)	exon (NM_007572, exon 3 of 3)	2154.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	59.49	74.19	101.74	68.15	81.64	81.18	101.39	80.03	50.59
Merged-chr11-67563373-3	chr11	67562870	67563870	+	986.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-23130.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	11.44	6.45	6.47	8.1	2.8	3.22	20.07	12.38	3.75
Merged-chr14-31494611-3	chr14	31494120	31495120	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	138.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	311.77	299.51	212.74	359.62	323.76	196.12	316.86	396.62	123.03
Merged-chr3-88607070-3	chr3	88606550	88607550	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9157.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	66.36	35.94	52.72	107.28	49.45	37.78	59.15	48.2	23.73
Merged-chr1-131294194-3	chr1	131293716	131294716	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 21 of 22)	intron (NM_001081011, intron 21 of 22)	-14653.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	12.59	12.9	22.2	16.87	9.8	16.08	16.9	9.73	14.99
Merged-chr16-45158296-3	chr16	45157812	45158812	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026402)	promoter-TSS (NM_026402)	361.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	52.63	56.22	51.8	62.07	78.84	46.62	74.99	78.71	34.97
Merged-chr2-27761944-3	chr2	27761447	27762447	+	986.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	51364.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	151.02	148.37	118.39	122.12	153.48	124.59	132.02	147.24	86.18
Merged-chr4-155694774-3	chr4	155694282	155695282	+	986.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178699, exon 1 of 1)	exon (NM_178699, exon 1 of 1)	440.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	44.62	26.73	36.07	69.5	42.45	44.21	42.25	25.2	9.37
Merged-chr7-16207691-3	chr7	16207214	16208214	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 7 of 16)	intron (NM_027883, intron 7 of 16)	14279.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	16.59	13.82	11.1	27.66	22.86	8.84	247.15	256.9	131.78
Merged-chr15-38259428-3	chr15	38258947	38259947	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	40244.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	18.31	9.68	15.72	12.82	8.4	8.84	51.75	64.11	23.73
Merged-chr18-6241967-3	chr18	6241475	6242475	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008448)	promoter-TSS (NM_008448)	-451.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	57.21	107.82	71.22	69.5	62.05	73.14	79.21	73.4	42.47
Merged-chr10-99265499-3	chr10	99264999	99265999	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026268, intron 2 of 2)	intron (NM_026268, intron 2 of 2)	2268.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	180.77	222.56	87.87	157.88	138.09	88.42	141.53	165.37	61.83
Merged-chr16-52185113-3	chr16	52184618	52185618	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 14 of 17)	intron (NM_001033238, intron 14 of 17)	153569.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	20.59	20.27	1.85	16.87	9.8	8.84	28.52	21.22	14.36
Merged-chr8-84998039-3	chr8	84997548	84998548	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167991, exon 15 of 22)	exon (NM_001167991, exon 15 of 22)	7453.0	NM_001167991	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	10.87	6.91	10.17	10.12	3.27	3.22	4.22	3.1	6.25
Merged-chr1-80665935-3	chr1	80665433	80666433	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285927)	promoter-TSS (NM_001285927)	-581.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	70.36	81.1	32.37	64.77	70.44	51.44	59.15	87.55	49.34
Merged-chr17-35866552-3	chr17	35866053	35867053	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-62.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	104.69	80.64	173.89	85.69	53.18	173.62	100.34	77.38	133.02
Merged-chr17-10842355-3	chr17	10841857	10842857	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	1998.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	7.44	13.36	20.35	6.07	10.73	17.68	12.67	14.59	15.61
Merged-chr3-68708427-3	chr3	68707909	68708909	+	986.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16985.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	5.15	10.14	9.25	7.42	9.8	6.43	7.39	7.07	9.37
Merged-chr3-152463610-1	chr3	152463110	152464110	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001346655)	TTS (NM_001346655)	66926.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	2.86	5.99	7.4	8.1	7.46	8.04	1.06	6.19	1.87
Merged-chr5-136246581-3	chr5	136246094	136247094	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1654.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	46.34	52.07	52.72	58.7	29.39	45.01	81.33	75.61	49.96
Merged-chr9-37657248-3	chr9	37656741	37657741	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025289)	promoter-TSS (NM_025289)	71.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	41.76	41.93	16.65	55.33	44.78	46.62	30.63	31.39	14.99
Merged-chr18-46370788-3	chr18	46370319	46371319	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58891.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	7.44	3.23	0.0	18.89	5.6	1.61	13.73	7.07	11.24
Merged-chr12-112623976-3	chr12	112623482	112624482	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	3935.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	5.72	3.69	2.77	6.07	3.27	3.22	6.34	3.54	0.62
Merged-chr13-113617364-3	chr13	113616865	113617865	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_130796, exon 1 of 2)	exon (NM_130796, exon 1 of 2)	1199.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	274.01	354.34	278.41	270.56	289.7	341.61	276.72	341.35	221.08
Merged-chrX-87238383-3	chrX	87237883	87238883	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160403, intron 5 of 10)	intron (NM_001160403, intron 5 of 10)	877240.0	NM_001160403	331461.0	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	1.72	0.92	0.0	0.67	0.0	0.0	0.0	0.44	0.0
Merged-chr11-103939738-1	chr11	103939238	103940238	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008740, intron 1 of 20)	L1M4|LINE|L1	14318.0	NM_008740	18195.0	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	11.44	8.75	18.5	32.39	17.73	20.9	13.73	3.98	9.99
Merged-chr19-44930205-2	chr19	44929706	44930706	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081225)	promoter-TSS (NM_001081225)	-913.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	110.98	122.57	80.47	112.68	109.16	68.32	113.01	145.92	60.58
Merged-chr10-127603193-1	chr10	127602693	127603693	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	17955.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	155.6	136.85	140.59	176.78	111.96	211.4	212.29	215.34	123.66
Merged-chr11-103363561-4	chr11	103363063	103364063	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_183288, exon 1 of 3)	5' UTR (NM_183288, exon 1 of 3)	129.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	181.91	141.92	161.87	163.96	128.76	143.07	134.14	144.15	76.19
Merged-chr5-45856151-2	chr5	45855664	45856664	+	986.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359873, intron 1 of 4)	intron (NM_001359873, intron 1 of 4)	388.0	NM_001359872	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	80.09	84.32	43.47	86.36	73.71	55.46	96.11	82.24	38.1
Merged-chr8-34689915-1	chr8	34689415	34690415	+	986.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER88|LTR|ERVL	-49599.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	2.29	1.84	0.0	0.0	0.47	1.61	3.17	3.1	5.62
Merged-chr1-92742522-3	chr1	92741992	92742992	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89153.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	16.59	16.59	25.9	33.06	18.66	20.9	15.84	12.38	3.75
Merged-chrUn_JH584304-47510-1	chrUn_JH584304	47010	48010	+	986.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12179.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	30.63	13.71	0.0
Merged-chr2-121140055-1	chr2	121139555	121140555	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-373.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	189.92	206.89	128.57	211.86	233.25	223.45	289.39	319.69	150.51
Merged-chr13-119329659-3	chr13	119329130	119330130	+	986.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR2b|LTR|Gypsy	79381.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	56.06	61.28	49.02	82.99	44.78	57.87	89.78	70.3	53.08
Merged-chr9-95574573-3	chr9	95574076	95575076	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14759.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	217.38	202.75	136.89	226.71	169.34	182.46	236.59	292.71	128.65
Merged-chr11-119268442-3	chr11	119267922	119268922	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008064, intron 1 of 19)	intron (NM_008064, intron 1 of 19)	459.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	406.16	355.26	177.59	436.54	459.98	290.17	314.74	361.25	129.28
Merged-chr6-136555767-3	chr6	136555282	136556282	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36931.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	49.2	38.71	23.12	66.8	44.32	29.74	36.97	40.68	12.49
Merged-chr18-50126284-3	chr18	50125767	50126767	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	74.94	70.96	70.3	60.72	62.51	56.27	61.26	68.98	61.83
Merged-chr1-62760263-3	chr1	62759784	62760784	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	34448.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	11.44	8.29	14.8	9.45	2.8	3.22	4.22	2.65	1.25
Merged-chr15-101165785-3	chr15	101165279	101166279	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8293.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	10.87	9.22	19.42	8.1	11.2	7.23	7.39	16.36	18.74
Merged-chr6-115480480-3	chr6	115479983	115480983	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58417.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	180.2	190.3	154.47	173.4	147.88	147.09	159.48	156.09	109.92
Merged-chr12-102302477-3	chr12	102301961	102302961	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	18820.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	45.76	27.19	49.95	37.11	31.26	30.54	49.64	38.47	28.73
Merged-chr11-119355470-3	chr11	119354977	119355977	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	33.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	221.38	189.84	155.39	226.03	205.73	134.23	262.99	268.4	133.02
Merged-chr3-81041132-3	chr3	81040617	81041617	+	985.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	Tigger15a|DNA|TcMar-Tigger	4701.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	42.33	79.72	50.87	61.4	116.16	78.77	63.37	63.67	46.84
Merged-chr18-82912270-2	chr18	82911769	82912769	+	985.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 1 of 5)	intron (NM_183033, intron 1 of 5)	1390.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	269.44	258.5	157.24	238.85	195.0	164.78	302.07	320.13	161.75
Merged-chr4-141958001-3	chr4	141957513	141958513	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24979.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	30.32	9.68	3.7	21.59	20.99	7.23	30.63	27.86	14.36
Merged-chr15-76626124-3	chr15	76625644	76626644	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305668)	promoter-TSS (NM_001305668)	-60.0	NM_001305668	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	112.12	136.85	99.89	118.75	110.1	157.54	151.03	156.09	101.17
Merged-chr1-34433374-3	chr1	34432892	34433892	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-193.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	73.79	76.95	52.72	58.7	63.91	76.36	80.27	99.05	61.2
Merged-chr5-5367157-3	chr5	5366583	5367583	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	13168.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	48.62	80.64	39.77	76.92	106.83	67.52	173.21	175.54	106.79
Merged-chr5-20749644-3	chr5	20749142	20750142	+	985.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132482.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	21.74	9.68	14.8	26.99	19.13	28.13	26.4	15.48	14.99
Merged-chr6-55431125-2	chr6	55430618	55431618	+	985.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-20860.0	NM_001025372	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	6.29	3.23	14.8	6.07	3.27	6.43	1.06	4.42	0.0
Merged-chr13-98814168-3	chr13	98813672	98814672	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1277.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	159.03	177.86	81.4	126.17	137.62	135.84	170.05	188.81	129.9
Merged-chr7-35026073-3	chr7	35025572	35026572	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	30494.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	26.31	43.77	22.2	43.18	41.52	65.91	45.42	35.82	33.1
Merged-chr10-62217456-3	chr10	62216960	62217960	+	985.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	13758.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	123.56	102.29	81.4	76.24	83.97	102.88	73.93	55.27	54.96
Merged-chr6-34938620-3	chr6	34938141	34939141	+	985.8148189999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 8 of 8)	intron (NM_009292, intron 8 of 8)	17693.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	135.0	140.54	83.25	138.32	156.75	103.69	153.15	148.13	63.7
Merged-chr11-3179756-3	chr11	3179259	3180259	+	985.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	intron (NM_030207, intron 4 of 32)	13704.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	50.91	62.21	107.29	78.27	79.31	106.9	8.45	5.75	91.81
Merged-chr2-33978688-3	chr2	33978202	33979202	+	985.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90756.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	12.59	5.99	5.55	24.96	7.93	3.22	25.35	9.73	7.49
Merged-chr13-55472574-5	chr13	55472095	55473095	+	985.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019813)	TTS (NM_019813)	5181.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	38.33	21.2	0.92	24.29	14.93	7.23	34.85	22.99	9.99
Merged-chr9-75432934-3	chr9	75432438	75433438	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8586.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	12.59	16.59	8.32	10.8	5.6	10.45	24.29	14.15	19.98
Merged-chr15-90679464-3	chr15	90678960	90679960	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025815)	promoter-TSS (NM_025815)	-72.0	NM_001357979	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	64.07	44.24	20.35	128.87	93.77	65.11	81.33	59.69	26.23
Merged-chr8-95428367-3	chr8	95427878	95428878	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	6491.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	33.18	40.09	40.7	48.58	33.59	43.4	36.97	36.26	16.24
Merged-chr2-23023945-3	chr2	23023441	23024441	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	intron (NM_001077190, intron 1 of 10)	16300.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	29.75	28.11	34.22	35.09	31.26	31.35	36.97	44.66	26.85
Merged-chr6-115767550-3	chr6	115767051	115768051	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5085.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	30.32	21.66	14.8	17.54	13.06	14.47	17.96	19.9	13.12
Merged-chr7-130839576-3	chr7	130839063	130840063	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26161.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	9.72	4.61	7.4	18.89	12.6	8.04	12.67	6.19	2.5
Merged-chr5-44049529-3	chr5	44049036	44050036	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 3 of 22)	intron (NM_001163578, intron 3 of 22)	45232.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	54.92	37.32	12.02	20.92	5.13	4.82	38.02	35.37	10.62
Merged-chrX-142682202-3	chrX	142681701	142682701	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 1 of 8)	intron (NR_152447, intron 1 of 8)	475.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	116.13	104.6	74.92	116.73	94.23	95.65	136.25	138.4	94.3
Merged-chr7-89411527-3	chr7	89411027	89412027	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7161.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	14.87	16.13	11.1	18.22	21.93	25.72	2.11	2.65	5.0
Merged-chr12-117566481-3	chr12	117565979	117566979	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	50000.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	30.89	51.15	29.6	43.18	30.32	24.11	86.61	82.24	39.35
Merged-chr5-63811974-3	chr5	63811481	63812481	+	985.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029554)	promoter-TSS (NM_029554)	-514.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	21.17	18.89	10.17	28.34	20.06	8.84	17.96	17.24	10.62
Merged-chr1-156420978-5	chr1	156420458	156421458	+	985.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346967)	promoter-TSS (NM_001346967)	-43.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	30.32	36.86	29.6	26.99	20.99	43.4	44.36	39.8	24.36
Merged-chr1-84363050-2	chr1	84362548	84363548	+	985.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78403.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	14.3	23.04	13.87	22.94	19.13	28.13	13.73	13.27	18.74
Merged-chr11-78803982-4	chr11	78803445	78804445	+	985.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22650.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	41.19	28.11	32.37	59.38	22.39	35.37	23.24	21.22	14.36
Merged-chr11-117958376-2	chr11	117957870	117958870	+	985.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10996.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	20.02	9.68	1.85	22.94	8.4	11.25	10.56	7.52	3.75
Merged-chr4-54642556-2	chr4	54642062	54643062	+	985.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-305383.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.58	5.07	1.85	7.42	3.27	0.0	2.11	2.65	5.0
Merged-chr9-95560225-5	chr9	95559793	95560793	+	985.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198414, exon 1 of 1)	exon (NM_198414, exon 1 of 1)	476.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	144.16	122.11	136.89	170.03	215.53	195.32	153.15	146.8	116.16
Merged-chr19-44267115-3	chr19	44266588	44267588	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-26588.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	15.45	19.81	14.8	24.29	10.73	11.25	32.74	38.91	16.24
Merged-chr5-110416716-3	chr5	110416206	110417206	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-29579.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	13.16	6.91	11.1	20.92	8.86	5.63	20.07	7.07	14.99
Merged-chr11-34827120-3	chr11	34826624	34827624	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027411, intron 2 of 11)	Tigger7|DNA|TcMar-Tigger	6517.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	18.88	17.05	5.55	31.71	28.46	8.04	23.24	21.22	5.0
Merged-chr14-31406291-3	chr14	31405784	31406784	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	11393.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	115.55	88.93	40.7	137.64	94.23	73.95	92.94	60.58	51.84
Merged-chr15-6081489-3	chr15	6080997	6081997	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR82B|LTR|ERVL	-36793.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	87.52	158.97	87.87	123.47	142.29	73.14	130.97	160.06	91.81
Merged-chr18-49945625-3	chr18	49945130	49946130	+	985.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081371, intron 37 of 42)	intron (NM_001081371, intron 37 of 42)	-33797.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	22.31	21.2	24.05	24.96	26.59	38.58	26.4	11.5	11.87
Merged-chr17-34281443-1	chr17	34280943	34281943	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6328.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	11.44	4.61	17.57	2.02	0.93	1.61	4.22	9.29	5.0
Merged-chr3-69223132-3	chr3	69222616	69223616	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027843, exon 1 of 1)	3' UTR (NM_027843, exon 1 of 1)	697.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	48.62	62.21	25.9	37.11	28.46	36.17	64.43	80.92	32.48
Merged-chr6-137757808-3	chr6	137757320	137758320	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 1 of 8)	MTC|LTR|ERVL-MaLR	3243.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	17.16	10.14	13.87	12.14	9.8	20.9	10.56	3.1	3.75
Merged-chr11-3409214-3	chr11	3408706	3409706	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	32.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	9.72	11.06	15.72	12.82	20.06	12.86	11.62	15.92	9.99
Merged-chr15-59819317-3	chr15	59818793	59819793	+	985.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24334.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	68.65	59.9	54.57	70.85	53.18	53.05	80.27	80.47	51.21
Merged-chr14-18893844-1	chr14	18893344	18894344	+	985.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360328)	promoter-TSS (NM_001360328)	-73.0	NM_144839	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	5.15	0.46	5.55	2.02	0.47	0.0	3.17	0.0	0.0
Merged-chr17-86961697-2	chr17	86961191	86962191	+	985.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1420.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	32.61	18.89	11.1	51.95	45.72	34.56	14.79	8.84	7.49
Merged-chr4-134758672-3	chr4	134758177	134759177	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 2 of 8)	intron (NM_145554, intron 2 of 8)	9327.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	24.6	8.75	12.02	26.31	19.59	16.88	23.24	12.38	6.25
Merged-chr9-88960201-3	chr9	88959692	88960692	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	3272.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	22.31	16.59	18.5	14.17	4.2	13.66	14.79	11.94	6.87
Merged-chr12-71136580-3	chr12	71136086	71137086	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029818)	promoter-TSS (NM_029818)	89.0	NM_001024853	30056.0	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	75.51	90.77	51.8	86.36	98.43	70.73	146.81	124.25	51.84
Merged-chr8-70273125-3	chr8	70272636	70273636	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9863.0	NM_011984	26558.0	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	16.59	14.75	11.1	14.17	20.53	16.08	19.01	22.55	8.74
Merged-chr10-78396397-3	chr10	78395915	78396915	+	985.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12130.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	6.29	3.69	1.85	2.7	1.87	0.8	1.06	2.21	2.5
Merged-chr10-80153012-3	chr10	80152495	80153495	+	985.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	3313.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	45.19	36.4	30.52	30.36	30.32	56.27	48.58	34.93	39.35
Merged-chr15-98928741-3	chr15	98928254	98929254	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GCTTG)n|Simple_repeat|Simple_repeat	5636.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	28.03	17.97	29.6	16.19	8.4	16.88	23.24	24.32	9.99
Merged-chr3-60616329-3	chr3	60615836	60616836	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 6 of 7)	intron (NM_001253711, intron 6 of 7)	115157.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	32.04	35.48	13.87	27.66	48.05	43.4	42.25	51.73	24.36
Merged-chr8-85510943-3	chr8	85510432	85511432	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 5 of 11)	intron (NM_173866, intron 5 of 11)	18315.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	36.61	30.87	19.42	56.0	27.06	28.94	60.2	53.5	16.86
Merged-chr18-82821658-3	chr18	82821156	82822156	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-34241.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	43.48	20.74	33.3	46.56	20.99	48.23	51.75	29.18	33.72
Merged-chr3-88772618-3	chr3	88772125	88773125	+	985.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018804)	promoter-TSS (NM_018804)	-26.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	11.44	12.9	0.0	10.8	7.93	8.04	4.22	5.31	5.0
Merged-chr7-6154302-3	chr7	6153793	6154793	+	985.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	MIR|SINE|MIR	1678.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	137.86	156.21	99.89	130.9	106.36	83.59	118.29	152.55	64.33
Merged-chr11-79652464-3	chr11	79651965	79652965	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	22621.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	6.86	5.07	3.7	4.72	1.4	5.63	9.51	1.77	5.0
Merged-chr7-25297615-3	chr7	25297116	25298116	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357350, exon 1 of 5)	5' UTR (NM_001357350, exon 1 of 5)	339.0	NM_008776	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	68.65	62.67	72.15	49.93	39.19	67.52	64.43	83.13	60.58
Merged-chr2-32361681-3	chr2	32361182	32362182	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1328.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	117.84	123.49	99.89	112.0	146.02	118.16	96.11	109.22	66.2
Merged-chr19-16326083-3	chr19	16325597	16326597	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-11093.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	37.18	37.78	58.27	31.04	16.33	19.29	40.14	26.97	15.61
Merged-chr11-106306007-3	chr11	106305493	106306493	+	985.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4097.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	38.33	18.89	44.4	38.46	25.19	25.72	44.36	28.3	29.35
Merged-chr13-81176274-3	chr13	81175758	81176758	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	212184.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.87	13.36	7.4	9.45	9.8	14.47	8.45	8.4	2.5
Merged-chr10-43849703-3	chr10	43849222	43850222	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23815.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	12.59	6.91	7.4	6.07	9.8	6.43	11.62	7.96	1.25
Merged-chr8-128268110-3	chr8	128267618	128268618	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10107.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	21.74	17.05	18.5	14.17	11.2	17.68	11.62	15.92	18.11
Merged-chr5-64960093-3	chr5	64959597	64960597	+	985.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359180)	promoter-TSS (NM_001359180)	-1.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	294.04	341.44	182.22	256.39	326.56	198.54	358.05	505.4	216.71
Merged-chrX-109013559-3	chrX	109013200	109014200	+	985.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016710)	promoter-TSS (NM_016710)	-320.0	NM_016710	50887.0	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	51.48	79.72	33.3	63.42	63.45	60.28	50.7	57.48	42.47
Merged-chr5-146963761-3	chr5	146963258	146964258	+	985.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256101)	promoter-TSS (NM_001256101)	39.0	NM_001256101	76366.0	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	14.87	30.41	25.9	24.96	31.72	44.21	38.02	30.95	18.74
Merged-chr13-41487234-3	chr13	41486690	41487690	+	985.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001111324, exon 1 of 8)	5' UTR (NM_001111324, exon 1 of 8)	170.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	86.38	98.15	97.12	88.39	101.23	98.06	114.07	104.35	77.44
Merged-chr1-152019314-3	chr1	152018820	152019820	+	985.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	71000.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	52.63	38.25	47.17	33.06	32.66	24.92	28.52	24.76	18.74
Merged-chr5-138227514-3	chr5	138227007	138228007	+	985.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013773, intron 1 of 5)	URR1B|DNA|hAT-Charlie	1603.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	31.46	41.47	32.37	42.51	24.26	32.96	7.39	11.94	26.85
Merged-chr18-34550137-1	chr18	34549637	34550637	+	985.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7809.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.57	0.92	0.0	2.7	3.73	3.22	3.17	4.42	6.25
Merged-chr11-103360444-3	chr11	103359935	103360935	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183288, exon 3 of 3)	exon (NM_183288, exon 3 of 3)	3257.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	229.39	196.75	178.52	184.87	181.47	202.55	180.61	167.14	93.05
Merged-chr2-25451362-3	chr2	25450847	25451847	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5496.0	NM_027085	69454.0	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	24.03	14.28	25.9	14.17	9.8	20.09	11.62	15.92	9.99
Merged-chr15-27675798-3	chr15	27675299	27676299	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	5743.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	76.08	50.69	43.47	66.8	49.45	69.93	45.42	53.94	23.11
Merged-chr4-54195941-1	chr4	54195441	54196441	+	985.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	369896.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	3.43	2.76	6.47	3.37	7.46	4.02	2.11	0.44	4.37
Merged-chr11-116397621-1	chr11	116397121	116398121	+	985.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	URR1B|DNA|hAT-Charlie	15411.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	1.14	3.23	6.47	7.42	5.6	3.22	79.21	49.52	38.1
Merged-chr10-4334468-3	chr10	4333962	4334962	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53013.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	4.0	14.28	3.7	16.87	18.66	20.9	5.28	7.07	5.0
Merged-chr5-147758869-3	chr5	147758402	147759402	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32914.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	49.77	64.05	81.4	30.36	54.58	64.3	102.45	123.81	35.6
Merged-chr11-26755789-3	chr11	26755300	26756300	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-29308.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	10.3	5.07	8.32	14.17	4.2	9.65	5.28	4.42	8.12
Merged-chr6-34374022-3	chr6	34373496	34374496	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10251.0	NM_172398	67861.0	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	10.87	6.91	5.55	17.54	10.73	18.49	11.62	10.61	10.62
Merged-chr2-101779198-3	chr2	101778703	101779703	+	985.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	18504.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	64.64	50.69	52.72	24.96	20.06	21.7	40.14	35.37	39.35
Merged-chr4-149697916-3	chr4	149697398	149698398	+	985.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008840, intron 1 of 24)	intron (NM_008840, intron 1 of 24)	810.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	94.96	121.19	108.22	95.14	90.04	103.69	117.24	129.11	85.56
Merged-chr9-70942818-3	chr9	70942344	70943344	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324472, intron 1 of 9)	intron (NM_001324472, intron 1 of 9)	-8036.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	46.91	35.48	12.02	62.07	62.05	79.58	46.47	35.82	20.61
Merged-chr4-109123363-3	chr4	109122873	109123873	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	RLTR19-int|LTR|ERVK	-5337.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	32.04	42.85	43.47	28.34	21.93	24.11	40.14	32.72	21.86
Merged-chr14-79441636-3	chr14	79441137	79442137	+	985.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10198.0	NM_001034882	432879.0	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	40.62	37.32	16.65	37.78	40.59	47.42	43.3	43.33	23.11
Merged-chr13-19416247-4	chr13	19415716	19416716	+	985.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20403.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	45.76	58.98	37.0	45.21	35.92	42.6	109.84	80.47	91.18
Merged-chr8-86881398-3	chr8	86880896	86881896	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	3862.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	17.73	13.36	21.27	12.82	8.4	18.49	10.56	12.38	18.11
Merged-chrX-113868006-3	chrX	113867510	113868510	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	569754.0	NM_001142570	93837.0	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund family transcription factor 2	protein-coding	14.3	10.6	2.77	10.8	3.27	0.0	9.51	6.19	5.0
Merged-chr13-99433302-3	chr13	99432837	99433837	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008634, exon 5 of 7)	exon (NM_008634, exon 5 of 7)	-20511.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	77.23	84.78	40.7	85.01	78.84	49.03	23.24	32.72	11.24
Merged-chr1-13426495-3	chr1	13426024	13427024	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52441.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	39.47	51.61	48.1	41.16	33.59	37.78	66.54	60.13	52.46
Merged-chr18-64957712-3	chr18	64957190	64958190	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65837.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	22.88	23.04	16.65	22.27	18.66	9.65	106.67	118.94	54.33
Merged-chr11-105460082-3	chr11	105459586	105460586	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3351.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	36.61	27.65	25.9	34.41	17.73	40.19	29.57	19.46	17.49
Merged-chr5-88767172-3	chr5	88766672	88767672	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	2159.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	77.8	98.61	79.55	91.09	82.57	54.66	109.84	148.57	56.83
Merged-chr7-31131038-3	chr7	31130543	31131543	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 18 of 18)	ORR1E|LTR|ERVL-MaLR	-4020.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	20.02	14.75	11.1	12.14	9.33	16.08	6.34	9.29	9.37
Merged-chr19-32758128-3	chr19	32757634	32758634	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008960, exon 1 of 9)	5' UTR (NM_008960, exon 1 of 9)	557.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	227.11	255.74	184.99	216.58	164.21	136.64	279.89	187.04	113.66
Merged-chr5-73492046-3	chr5	73491527	73492527	+	985.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178896, intron 1 of 10)	CpG	1001.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	49.2	39.63	41.62	39.13	41.99	37.78	89.78	66.33	53.08
Merged-chr12-38929112-3	chr12	38928572	38929572	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145361.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	37.76	33.18	27.75	25.64	38.25	27.33	21.12	20.34	31.85
Merged-chr19-46523184-3	chr19	46522692	46523692	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	21544.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	342.66	244.68	196.09	392.69	185.2	235.51	276.72	298.46	141.14
Merged-chr15-68362146-3	chr15	68361643	68362643	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20854.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	213.95	302.74	186.84	240.87	235.59	151.11	297.84	349.75	183.61
Merged-chr15-34067297-3	chr15	34066831	34067831	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-15388.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	29.17	20.27	22.2	22.27	16.79	36.17	21.12	19.46	32.48
Merged-chr7-30216984-3	chr7	30216478	30217478	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14413.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.29	2.76	0.0	8.77	1.4	1.61	8.45	3.98	1.25
Merged-chr5-100582648-3	chr5	100582169	100583169	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10464.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	18.88	18.89	17.57	41.16	9.33	18.49	54.92	47.31	21.23
Merged-chr9-100734273-3	chr9	100733789	100734789	+	985.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 3 of 33)	intron (NM_009282, intron 3 of 33)	90841.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	25.17	45.16	44.4	29.69	32.19	18.49	26.4	16.8	35.6
Merged-chr6-17410405-2	chr6	17409931	17410931	+	985.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR81|LTR|Gypsy	-53526.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	16.59	14.75	7.4	20.92	16.33	16.88	22.18	15.92	28.73
Merged-chr14-102843875-3	chr14	102843376	102844376	+	985.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138756.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	8.01	3.69	3.7	5.4	1.4	1.61	3.17	8.4	0.0
Merged-chr5-96909476-3	chr5	96908982	96909982	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-11790.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	43.48	44.24	26.82	49.93	39.19	55.46	47.53	40.68	68.07
Merged-chr5-149247750-3	chr5	149247245	149248245	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17259.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	116.7	90.77	80.47	106.61	81.64	118.16	92.94	110.1	73.07
Merged-chr2-35493594-3	chr2	35493105	35494105	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32156.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	25.17	7.37	20.35	24.29	15.86	46.62	13.73	5.31	6.25
Merged-chr4-98109247-3	chr4	98108741	98109741	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 10 of 10)	intron (NM_010905, intron 10 of 10)	274024.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	4.0	2.76	12.02	4.72	8.4	12.86	7.39	3.98	9.99
Merged-chr11-69664723-3	chr11	69664235	69665235	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110993, intron 4 of 4)	intron (NR_110993, intron 4 of 4)	1435.0	NM_001291058	12514.0	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	308.91	269.56	240.49	296.88	315.36	255.6	304.18	352.85	166.75
Merged-chr6-137582392-3	chr6	137581895	137582895	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-11386.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	22.88	16.59	10.17	18.22	7.0	0.0	4.22	0.0	3.75
Merged-chr14-102995371-3	chr14	102994888	102995888	+	985.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	-12751.0	NM_177715	239217.0	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	4.58	5.53	9.25	4.72	7.93	0.0	2.11	3.98	0.0
Merged-chr13-76384650-5	chr13	76384065	76385065	+	985.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030174)	promoter-TSS (NM_030174)	-396.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.72	5.53	7.4	10.8	7.46	16.08	2.11	0.44	2.5
Merged-chr14-121916493-3	chr14	121915991	121916991	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-717.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	22.88	26.73	14.8	15.52	13.53	15.27	25.35	13.71	26.85
Merged-chr5-8917289-3	chr5	8916790	8917790	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008830, intron 9 of 27)	intron (NM_008830, intron 9 of 27)	23569.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	8.58	5.99	1.85	5.4	2.33	1.61	7.39	3.54	7.49
Merged-chr16-91464083-3	chr16	91463584	91464584	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1020.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	260.28	219.33	143.37	284.73	172.61	195.32	310.52	360.37	133.02
Merged-chr17-48287032-3	chr17	48286524	48287524	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-13014.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	15.45	17.97	24.05	26.31	20.06	24.11	35.91	29.18	23.11
Merged-chr10-126986827-3	chr10	126986325	126987325	+	985.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	8108.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	26.31	32.72	45.32	27.66	21.93	42.6	26.4	39.35	28.73
Merged-chr5-99212012-3	chr5	99211513	99212513	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40914.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.44	8.75	12.95	3.37	5.13	12.86	3.17	1.77	5.0
Merged-chr1-72736547-1	chr1	72736047	72737047	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25287.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	2.86	2.3	5.55	6.75	1.87	0.0	1.06	1.33	5.0
Merged-chr14-14703601-2	chr14	14703067	14704067	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360513, intron 1 of 25)	CpG	542.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	121.85	99.07	130.42	86.36	87.24	69.93	100.34	53.06	65.58
Merged-chr2-50837803-1	chr2	50837303	50838303	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71881.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.0	3.69	1.85	3.37	4.67	0.0	3.17	1.77	2.5
Merged-chr6-123267069-3	chr6	123266567	123267567	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010819, exon 3 of 6)	exon (NM_010819, exon 3 of 6)	4960.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	23.45	21.2	1.85	44.53	37.79	10.45	38.02	15.92	5.62
Merged-chr6-129361370-1	chr6	129360870	129361870	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177686, intron 5 of 5)	intron (NM_177686, intron 5 of 5)	11126.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	13.73	10.6	16.65	12.82	14.46	25.72	20.07	10.17	17.49
Merged-chr17-34283829-1	chr17	34283329	34284329	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010378, exon 3 of 5)	exon (NM_010378, exon 3 of 5)	3942.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	21.17	11.52	25.9	4.05	1.4	4.82	4.22	5.75	7.49
Merged-chr6-84027816-3	chr6	84027331	84028331	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	8445.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	34.9	21.66	28.67	28.34	17.26	32.15	31.69	23.43	21.86
Merged-chr10-99264046-1	chr10	99263546	99264546	+	985.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026268, exon 1 of 3)	exon (NM_026268, exon 1 of 3)	815.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	248.27	310.11	201.64	192.97	241.18	155.13	237.64	267.07	182.36
Merged-chr12-108204069-3	chr12	108203574	108204574	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009832)	TTS (NM_009832)	24336.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	30.32	35.94	43.47	29.01	14.0	16.08	26.4	30.07	11.24
Merged-chr4-116877265-3	chr4	116876775	116877775	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029912)	promoter-TSS (NM_001029912)	-127.0	NM_001029912	74464.0	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	5.72	0.46	1.85	2.7	1.4	0.0	6.34	2.65	2.5
Merged-chr5-110386241-5	chr5	110385755	110386755	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	872.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	42.33	47.0	29.6	22.94	5.13	22.51	65.48	61.46	34.97
Merged-chr10-68724573-2	chr10	68724103	68725103	+	985.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	857.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	169.9	152.98	162.79	181.5	194.53	159.15	299.96	337.82	156.76
Merged-chr12-98734667-3	chr12	98734168	98735168	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-23.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	20.02	32.25	45.32	41.83	34.06	45.82	36.97	22.55	24.98
Merged-chr7-80343131-3	chr7	80342684	80343684	+	985.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026812)	promoter-TSS (NM_026812)	47.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	48.62	24.42	12.95	40.48	39.65	27.33	22.18	18.13	9.37
Merged-chr13-97129297-3	chr13	97128786	97129786	+	984.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021552)	TTS (NM_021552)	8640.0	NM_021552	59050.0	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	63.5	55.29	25.9	70.17	58.31	40.99	67.6	88.88	31.23
Merged-chr13-74462777-3	chr13	74462299	74463299	+	984.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31151.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	33.18	55.75	76.77	56.68	49.92	82.79	77.1	79.59	61.83
Merged-chr6-29848934-3	chr6	29848408	29849408	+	984.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	-4833.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	41.76	31.33	21.27	50.6	41.05	38.58	44.36	20.34	16.86
Merged-chr19-9135648-3	chr19	9135150	9136150	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025610)	promoter-TSS (NM_025610)	-84.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	45.19	49.76	20.35	37.11	34.99	34.56	7.39	13.27	7.49
Merged-chr3-142594771-3	chr3	142594260	142595260	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010259)	promoter-TSS (NM_010259)	-87.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	30.89	32.72	49.02	16.19	21.46	35.37	55.98	41.56	28.1
Merged-chr18-61394990-3	chr18	61394498	61395498	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	2902.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	11.44	10.6	25.9	20.92	4.67	4.82	23.24	16.36	18.11
Merged-chr16-97961555-3	chr16	97961072	97962072	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175428, intron 1 of 2)	intron (NM_175428, intron 1 of 2)	1050.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	123.56	83.86	79.55	126.85	77.91	45.82	110.9	86.66	39.35
Merged-chr1-34473233-3	chr1	34472740	34473740	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 13 of 14)	intron (NM_011206, intron 13 of 14)	13494.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	77.8	102.75	99.89	68.82	84.44	94.04	108.79	110.1	81.81
Merged-chr17-80728187-3	chr17	80727683	80728683	+	984.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290345)	promoter-TSS (NM_001290345)	-158.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	114.98	60.82	106.37	118.08	59.71	78.77	102.45	50.41	56.21
Merged-chr5-137817660-3	chr5	137817150	137818150	+	984.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360023, intron 13 of 16)	intron (NM_001360023, intron 13 of 16)	18628.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	33.75	17.05	16.65	27.66	20.53	11.25	16.9	15.92	13.12
Merged-chr15-53373973-3	chr15	53373459	53374459	+	984.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-27776.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	12.59	17.51	14.8	11.47	12.6	8.04	12.67	6.19	15.61
Merged-chr2-6363379-3	chr2	6362885	6363885	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	10649.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	16.59	6.45	9.25	16.87	9.8	1.61	14.79	9.73	5.0
Merged-chr8-94955274-3	chr8	94954782	94955782	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-21827.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	9.72	14.28	5.55	9.45	4.67	0.0	8.45	7.07	5.0
Merged-chr19-24417833-3	chr19	24417326	24418326	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	59648.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	13.73	12.9	7.4	12.14	7.46	4.82	41.19	31.39	21.86
Merged-chr8-84707481-3	chr8	84707002	84708002	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6045.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	46.91	45.16	61.97	44.53	29.86	127.8	44.36	49.08	56.21
Merged-chr2-129512338-3	chr2	129511862	129512862	+	984.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	L1_Mus2|LINE|L1	24240.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	63.5	33.18	59.2	51.28	46.65	60.28	53.87	45.54	37.47
Merged-chrX-48428803-3	chrX	48428294	48429294	+	984.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	34338.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	44.62	58.52	56.42	37.11	21.93	47.42	54.92	50.85	53.71
Merged-chr10-128090767-3	chr10	128090256	128091256	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016774)	TTS (NM_016774)	-2027.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	108.12	72.34	65.67	63.42	40.12	70.73	71.82	91.09	70.57
Merged-chr3-52270097-3	chr3	52269617	52270617	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	1780.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	50.34	35.48	32.37	39.13	31.72	53.85	61.26	38.47	38.1
Merged-chr9-80163543-3	chr9	80163051	80164051	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1483.0	NM_001039546	17920.0	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	4.58	5.07	5.55	10.8	0.47	4.82	12.67	5.31	5.0
Merged-chr9-5308144-3	chr9	5307631	5308631	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007609)	promoter-TSS (NM_007609)	-718.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	97.25	106.9	42.55	74.89	71.38	45.82	66.54	63.67	34.97
Merged-chr19-5989222-3	chr19	5988711	5989711	+	984.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007600, exon 22 of 22)	3' UTR (NM_007600, exon 22 of 22)	-3068.0	NM_198650	381203.0	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	10.3	6.45	12.95	16.19	7.46	7.23	14.79	9.29	5.0
Merged-chr14-32932481-4	chr14	32932022	32933022	+	984.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-58860.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	42.9	29.03	26.82	59.38	34.99	32.96	23.24	23.88	14.36
Merged-chr10-77267214-3	chr10	77266720	77267720	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030262, exon 8 of 9)	exon (NM_030262, exon 8 of 9)	7920.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	77.8	86.63	67.52	109.98	72.78	77.97	77.1	96.83	57.46
Merged-chr7-81203713-3	chr7	81203184	81204184	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D2|LTR|ERVK	-10120.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	32.61	18.89	12.02	87.04	47.12	48.23	55.98	61.02	54.33
Merged-chr19-45591899-3	chr19	45591358	45592358	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 5 of 8)	intron (NM_013907, intron 5 of 8)	31273.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	30.32	31.79	18.5	40.48	21.93	31.35	34.85	22.55	11.24
Merged-chr9-42944944-3	chr9	42944454	42945454	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-583.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	25.17	16.13	16.65	12.82	8.4	3.22	12.67	7.96	5.0
Merged-chr4-35166026-3	chr4	35165535	35166535	+	984.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8551.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	11.44	10.6	8.32	57.35	65.31	76.36	50.7	41.56	57.46
Merged-chr2-165287783-3	chr2	165287266	165288266	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	21.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	78.37	72.8	77.7	87.71	95.63	90.83	98.23	102.58	64.33
Merged-chr14-77511631-1	chr14	77511131	77512131	+	984.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	Lx5c|LINE|L1	-4763.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.29	1.84	2.77	3.37	0.47	0.0	2.11	1.77	6.25
Merged-chr1-182341185-3	chr1	182340660	182341660	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175127, intron 1 of 4)	CpG	446.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	145.3	111.97	98.97	153.84	66.71	81.99	110.9	58.37	64.95
Merged-chr17-12769677-3	chr17	12769138	12770138	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	68.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	42.33	23.5	22.2	43.86	32.66	33.76	95.06	57.48	24.98
Merged-chr2-164486323-3	chr2	164485862	164486862	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026797)	promoter-TSS (NM_026797)	-93.0	NM_026797	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	117.27	75.57	77.7	99.18	68.58	94.04	39.08	31.39	27.48
Merged-chr17-55751357-3	chr17	55750851	55751851	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	intron (NM_139138, intron 1 of 16)	1367.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	154.45	182.47	103.59	156.53	87.24	155.13	128.85	134.42	88.06
Merged-chr10-26773169-3	chr10	26772639	26773639	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	627.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	162.46	146.07	91.57	133.59	146.02	98.06	86.61	99.49	46.84
Merged-chr3-142521491-3	chr3	142521007	142522007	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153564, exon 11 of 11)	3' UTR (NM_153564, exon 11 of 11)	-8829.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	5.72	6.91	12.95	5.4	5.13	4.82	2.11	6.19	3.12
Merged-chr10-17221645-3	chr10	17221153	17222153	+	984.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-125871.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	21.17	13.36	26.82	8.77	15.86	20.09	11.62	7.96	14.36
Merged-chr17-71294857-2	chr17	71294419	71295419	+	984.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	L2c|LINE|L2	16092.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	9.72	12.44	24.05	24.29	19.59	24.11	47.53	33.6	23.11
Merged-chr19-5723049-3	chr19	5722546	5723546	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	3271.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	22.31	20.74	34.22	28.34	26.59	55.46	15.84	18.13	18.11
Merged-chr11-106153707-3	chr11	106153212	106154212	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 15 of 15)	intron (NM_011947, intron 15 of 15)	6215.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	39.47	41.47	47.17	53.98	35.45	43.4	46.47	39.35	32.48
Merged-chr7-132852567-3	chr7	132852064	132853064	+	984.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347629)	promoter-TSS (NM_001347629)	83.0	NM_028095	72096.0	Mm.28631	NM_028095	ENSMUSG00000030960	Eef1akmt2	2010208K18Rik|Mettl10	EEF1A lysine methyltransferase 2	protein-coding	68.07	60.36	54.57	61.4	49.92	100.47	83.44	44.66	45.59
Merged-chr17-5440447-6	chr17	5439971	5440971	+	984.569458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-211.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	134.43	138.24	93.42	162.61	140.89	104.49	182.72	202.95	106.17
Merged-chr5-8353882-3	chr5	8353388	8354388	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	L1_Mus2|LINE|L1	14272.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	16.59	18.89	24.97	21.59	13.06	18.49	8.45	11.5	6.25
Merged-chr5-65696898-3	chr5	65696397	65697397	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081321, exon 2 of 32)	exon (NM_001081321, exon 2 of 32)	959.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	97.82	104.6	122.09	78.27	107.76	105.3	118.29	89.32	59.33
Merged-chr7-101553522-3	chr7	101553023	101554023	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007490, intron 2 of 2)	intron (NM_007490, intron 2 of 2)	2279.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	78.37	72.34	77.7	47.23	29.86	60.28	51.75	42.89	41.84
Merged-chr7-102417597-3	chr7	102417102	102418102	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 6 of 11)	intron (NM_009287, intron 6 of 11)	-24093.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	10.87	5.53	3.7	7.42	7.93	0.0	6.34	6.63	2.5
Merged-chr5-114131202-3	chr5	114130717	114131717	+	984.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011677)	promoter-TSS (NM_011677)	61.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	109.26	108.75	60.12	154.51	169.81	113.33	175.33	183.06	51.21
Merged-chr14-66277138-3	chr14	66276652	66277652	+	984.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	3900.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	33.75	19.35	30.52	20.24	10.73	17.68	28.52	26.53	9.99
Merged-chr5-43672333-2	chr5	43671840	43672840	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 4 of 37)	intron (NM_001359906, intron 4 of 37)	9961.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	1.72	1.84	1.85	19.57	11.2	8.04	3.17	2.21	3.12
Merged-chr17-87156363-3	chr17	87155852	87156852	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38590.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	65.79	73.73	71.22	99.18	101.7	87.61	16.9	11.94	9.99
Merged-chr18-52571006-2	chr18	52570511	52571511	+	984.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41144.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	5.15	3.69	1.85	1.35	4.2	7.23	10.56	3.1	0.0
Merged-chr7-81572302-3	chr7	81571799	81572799	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	1007.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	212.23	241.91	208.11	155.19	185.2	158.35	178.5	176.42	123.66
Merged-chr12-70910424-3	chr12	70909932	70910932	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27425.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	9.72	4.15	0.92	11.47	3.27	0.0	5.28	2.21	5.0
Merged-chr13-81351721-4	chr13	81351284	81352284	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	281360.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	153.31	190.76	98.97	192.29	176.81	160.76	186.94	187.04	130.53
Merged-chr1-191023328-3	chr1	191022831	191023831	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081259, intron 1 of 9)	L2b|LINE|L2	-2020.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	31.46	29.95	21.27	39.81	22.39	37.78	47.53	36.26	26.23
Merged-chr9-21184147-3	chr9	21183667	21184667	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310750)	promoter-TSS (NM_001310750)	66.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	12.01	9.22	1.85	12.14	13.06	4.82	19.01	8.4	5.0
Merged-chr13-95638990-3	chr13	95638512	95639512	+	984.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 30 of 35)	intron (NM_027711, intron 30 of 35)	-20546.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	37.18	41.47	24.05	11.47	5.13	29.74	40.14	34.05	23.73
Merged-chr11-22857274-3	chr11	22856768	22857768	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	2467.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	58.35	62.67	47.17	55.33	31.26	49.83	77.1	63.67	39.35
Merged-chr9-38741584-3	chr9	38741073	38742073	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 18 of 18)	intron (NM_001145957, intron 18 of 18)	-11223.0	NM_146787	258783.0	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	20.59	14.75	12.02	26.99	16.79	4.82	15.84	7.96	9.99
Merged-chr4-119053841-3	chr4	119053333	119054333	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131914)	TTS (NR_131914)	15278.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	10.3	10.6	16.65	8.1	10.26	15.27	5.28	6.63	11.24
Merged-chr13-97340673-3	chr13	97340158	97341158	+	984.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94312.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	10.3	7.37	12.02	10.12	6.06	9.65	14.79	19.46	4.37
Merged-chr12-111671647-3	chr12	111671147	111672147	+	984.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021273, intron 2 of 7)	CpG-3541	691.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	269.44	205.51	110.99	198.37	197.33	171.21	157.37	192.78	180.49
Merged-chr18-60789453-3	chr18	60788949	60789949	+	984.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14400.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	20.02	31.33	30.52	12.14	6.53	6.43	36.97	33.16	36.85
Merged-chr15-73732232-2	chr15	73731733	73732733	+	984.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	7303.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	129.86	176.94	135.97	131.57	151.15	196.12	205.96	200.3	143.02
Merged-chr2-6330810-3	chr2	6330323	6331323	+	984.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	8066.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	30.32	16.59	25.9	35.09	21.93	18.49	20.07	25.65	14.36
Merged-chr3-88491335-3	chr3	88490825	88491825	+	984.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	1987.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	17.73	16.59	2.77	22.94	22.86	15.27	6.34	3.54	13.12
Merged-chr19-47256112-3	chr19	47255618	47256618	+	984.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163480, intron 4 of 5)	intron (NM_001163480, intron 4 of 5)	17471.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	18.88	12.9	3.7	12.82	8.86	8.84	29.57	14.59	19.36
Merged-chr7-90132036-10	chr7	90131485	90132485	+	984.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	1772.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	371.83	417.01	206.26	318.47	361.08	250.78	337.98	403.7	173.62
Merged-chr4-126109805-3	chr4	126109291	126110291	+	984.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	5834.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	118.99	127.64	111.92	99.18	55.98	51.44	73.93	74.28	29.35
Merged-chr3-100160785-3	chr3	100160252	100161252	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175552, intron 2 of 26)	intron (NM_175552, intron 2 of 26)	1655.0	NM_175552	269470.0	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	20.02	29.95	24.05	32.39	32.66	39.39	45.42	31.39	28.1
Merged-chr4-62481422-3	chr4	62480914	62481914	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	1347.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	24.03	21.66	5.55	13.49	10.26	15.27	13.73	6.63	3.75
Merged-chr5-143329208-3	chr5	143328724	143329724	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028379)	promoter-TSS (NM_028379)	14.0	NM_001359445	72881.0	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik|DHHC-4	zinc finger, DHHC domain containing 4	protein-coding	152.74	166.34	89.72	126.17	141.35	138.25	145.75	157.85	79.32
Merged-chr10-80680241-3	chr10	80679739	80680739	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3946.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	78.37	83.86	100.82	134.94	117.56	113.33	146.81	164.04	71.82
Merged-chr8-121951185-3	chr8	121950706	121951706	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016812, intron 1 of 13)	CpG	714.0	NM_001285983	53325.0	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	100.11	101.83	121.17	95.81	72.31	75.56	123.57	59.69	55.58
Merged-chr14-120407014-3	chr14	120406513	120407513	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 8 of 8)	intron (NM_001360376, intron 8 of 8)	-71448.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.58	11.52	1.85	12.14	4.67	13.66	9.51	4.86	8.74
Merged-chr11-82908391-3	chr11	82907904	82908904	+	984.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145431)	promoter-TSS (NM_145431)	-9.0	NM_145431	217011.0	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1	protein-coding	16.59	10.14	17.57	14.84	12.13	8.04	13.73	5.75	8.74
Merged-chr17-32635068-3	chr17	32634627	32635627	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001100187, exon 13 of 13)	exon (NM_001100187, exon 13 of 13)	13808.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	6.29	3.69	0.0	6.07	3.27	8.04	3.17	4.42	3.75
Merged-chr18-12230179-3	chr18	12229685	12230685	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	intron (NM_008720, intron 1 of 24)	6201.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	29.17	32.72	24.05	67.47	42.92	46.62	27.46	24.32	19.36
Merged-chr4-46507467-3	chr4	46506962	46507962	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029077, intron 5 of 5)	CpG	18133.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	10.3	6.45	15.72	16.87	7.46	9.65	4.22	7.07	9.37
Merged-chr6-134027271-3	chr6	134026796	134027796	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8404.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.01	4.61	3.7	18.22	7.0	11.25	25.35	10.61	8.12
Merged-chr2-166030437-3	chr2	166029953	166030953	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	37816.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	101.25	82.48	98.97	74.22	60.18	48.23	92.94	121.15	41.22
Merged-chr12-12289850-3	chr12	12289345	12290345	+	984.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27706.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	46.91	34.56	21.27	39.13	27.52	21.7	65.48	52.18	47.46
Merged-chr1-21036040-3	chr1	21035549	21036549	+	984.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	43176.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	14.3	19.81	18.5	10.8	15.39	8.04	6.34	5.75	5.0
Merged-chr13-62294534-2	chr13	62294034	62295034	+	984.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	88640.0	NM_001162910	100041979.0	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	17.73	14.75	1.85	7.42	14.0	9.65	1.06	1.33	2.5
Merged-chr4-63557465-3	chr4	63556957	63557957	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	175.62	190.76	109.14	195.67	257.05	147.9	276.72	337.82	103.67
Merged-chr2-119167768-3	chr2	119167266	119168266	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-22.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	10.3	3.69	0.0	4.72	9.8	13.66	8.45	9.29	1.25
Merged-chr11-78887196-3	chr11	78886694	78887694	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33593.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	44.05	35.48	47.17	40.48	20.99	18.49	44.36	40.24	19.98
Merged-chr17-57335873-3	chr17	57335382	57336382	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22804.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	96.11	87.55	36.07	51.95	48.52	38.58	84.49	93.3	51.21
Merged-chr1-131038315-3	chr1	131037807	131038807	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18462.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	16.02	12.9	1.85	13.49	9.33	6.43	19.01	16.36	6.25
Merged-chr8-10841283-3	chr8	10840778	10841778	+	984.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41176.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	38.33	23.5	22.2	40.48	20.53	10.45	11.62	6.19	3.75
Merged-chr2-119357060-1	chr2	119356560	119357560	+	984.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5818.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	7.44	1.38	1.85	3.37	1.87	1.61	4.22	0.44	8.74
Merged-chrX-99046646-3	chrX	99046143	99047143	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	4062.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	38.9	34.1	43.47	26.99	31.72	44.21	35.91	53.94	34.97
Merged-chr12-111809987-3	chr12	111809489	111810489	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028875, intron 3 of 7)	intron (NM_028875, intron 3 of 7)	3890.0	NM_028875	74335.0	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	4.0	1.84	1.85	12.14	8.4	15.27	14.79	7.07	2.5
Merged-chr9-22118246-3	chr9	22117768	22118768	+	984.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	71.51	60.82	41.62	49.25	48.52	53.05	66.54	67.21	66.82
Merged-chr9-123851411-7	chr9	123851002	123852002	+	984.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011798)	TTS (NM_011798)	159.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	244.84	276.01	222.91	246.27	220.19	217.02	242.92	361.69	169.87
Merged-chr10-4388048-3	chr10	4387557	4388557	+	984.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359811)	promoter-TSS (NM_001359811)	51.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	164.18	153.9	237.71	197.69	204.8	190.5	195.39	128.67	158.01
Merged-chr11-51931377-3	chr11	51930888	51931888	+	984.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-36243.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	173.33	130.4	127.64	159.91	115.69	148.7	144.7	148.13	85.56
Merged-chr12-76538075-3	chr12	76537573	76538573	+	984.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	4513.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	159.6	195.37	164.64	141.02	128.29	169.6	171.1	206.93	129.28
Merged-chr16-76532947-3	chr16	76532461	76533461	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15834.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	64.07	80.64	56.42	69.5	87.7	73.14	119.35	91.53	43.09
Merged-chr8-124434568-3	chr8	124434059	124435059	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_171824)	promoter-TSS (NM_171824)	-623.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	1.14	0.46	1.85	6.07	1.4	0.8	0.0	0.0	2.5
Merged-chr18-4009298-3	chr18	4008783	4009783	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156549.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.86	12.44	3.7	10.12	7.46	18.49	14.79	9.29	3.75
Merged-chr14-54908851-3	chr14	54908349	54909349	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360406, exon 5 of 10)	exon (NM_001360406, exon 5 of 10)	4283.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	38.33	29.03	35.15	65.45	38.72	68.32	51.75	44.22	43.09
Merged-chr19-36918973-3	chr19	36918488	36919488	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028263, exon 2 of 2)	exon (NM_028263, exon 2 of 2)	611.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	23.45	12.9	18.5	44.53	32.66	45.82	91.89	46.43	26.85
Merged-chr10-10287642-3	chr10	10287071	10288071	+	984.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184743.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.29	7.83	18.5	12.82	12.6	8.04	3.17	3.54	3.75
Merged-chr3-105802122-2	chr3	105801611	105802611	+	984.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145541)	promoter-TSS (NM_145541)	-730.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	118.99	128.56	98.05	112.68	107.3	104.49	116.18	162.72	121.78
Merged-chr11-115076809-3	chr11	115076317	115077317	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14614.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	78.37	49.3	34.22	88.39	48.05	48.23	30.63	32.28	24.98
Merged-chrX-19166437-3	chrX	19165927	19166927	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19456.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	86.95	169.11	63.82	95.14	80.71	50.64	119.35	152.99	51.84
Merged-chr18-65690828-6	chr18	65690330	65691330	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7438.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	189.35	213.8	166.49	215.91	217.39	200.95	202.79	237.44	126.15
Merged-chr13-109288331-3	chr13	109287839	109288839	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-36405.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	6.86	9.22	7.4	9.45	8.4	11.25	12.67	11.5	5.0
Merged-chr16-24637572-3	chr16	24637021	24638021	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-84334.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	18.88	21.2	15.72	41.16	33.59	16.08	31.69	28.3	9.99
Merged-chr9-102879707-3	chr9	102879206	102880206	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042607, intron 6 of 14)	intron (NM_001042607, intron 6 of 14)	44786.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	18.31	15.21	11.1	15.52	18.19	11.25	8.45	14.59	0.0
Merged-chr11-78245722-3	chr11	78245209	78246209	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009297)	promoter-TSS (NM_009297)	-6.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	560.61	495.8	364.43	460.83	390.47	313.48	497.46	482.85	248.56
Merged-chr2-11439483-3	chr2	11438980	11439980	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40980.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	36.61	28.57	36.07	64.1	38.25	34.56	40.14	34.93	12.49
Merged-chr6-39724941-3	chr6	39724466	39725466	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139294, intron 1 of 21)	CpG	497.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	306.05	256.2	197.94	269.21	174.47	131.82	258.77	162.72	144.27
Merged-chr11-32347803-3	chr11	32347290	32348290	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177364)	promoter-TSS (NM_177364)	-21.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	86.95	72.34	54.57	12.14	16.79	27.33	20.07	6.63	23.11
Merged-chr15-84231298-3	chr15	84230797	84231797	+	984.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133167)	promoter-TSS (NM_133167)	-746.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	50.34	52.99	49.95	38.46	43.39	47.42	41.19	59.69	26.23
Merged-chr18-6459553-3	chr18	6459057	6460057	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 2 of 13)	intron (NM_007935, intron 2 of 13)	31089.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	13.73	11.98	9.25	10.12	11.66	14.47	23.24	15.92	6.87
Merged-chr1-173848059-1	chr1	173847559	173848559	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	32128.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.86	0.92	0.0	6.75	12.6	6.43	4.22	2.21	1.25
Merged-chr13-110541508-2	chr13	110541029	110542029	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	146485.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	26.31	16.13	4.62	51.28	30.79	16.88	39.08	27.86	11.87
Merged-chr9-104337758-1	chr9	104337258	104338258	+	984.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019807)	promoter-TSS (NM_019807)	-36.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	4.0	4.15	5.55	2.7	3.73	3.22	6.34	0.0	1.25
Merged-chr6-30402280-1	chr6	30401780	30402780	+	984.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311087, intron 1 of 8)	CpG	425.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	126.42	108.28	118.39	120.77	76.97	88.42	109.84	105.24	59.95
Merged-chr8-122556815-3	chr8	122556331	122557331	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5502.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	100.68	146.07	128.57	122.8	117.09	166.38	229.19	279.01	119.28
Merged-chr16-90349858-3	chr16	90349361	90350361	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-36536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	2.29	3.69	0.0	7.42	2.33	1.61	4.22	1.33	2.5
Merged-chr10-98915661-2	chr10	98915150	98916150	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	CpG	498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	285.45	202.28	175.74	256.39	163.28	193.71	227.08	156.09	185.48
Merged-chr6-85154148-3	chr6	85153648	85154648	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16384.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	2.86	1.84	1.85	14.17	4.67	5.63	2.11	2.21	3.75
Merged-chr1-131448537-3	chr1	131448025	131449025	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	78836.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	57.21	56.68	40.7	64.1	60.18	63.5	49.64	59.25	39.97
Merged-chr16-76356117-3	chr16	76355594	76356594	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	16955.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	57.78	62.21	52.72	54.65	32.19	22.51	53.87	51.73	23.11
Merged-chr8-117241265-3	chr8	117240773	117241773	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-15746.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	11.44	6.45	9.25	9.45	9.33	9.65	8.45	3.1	3.75
Merged-chr17-71195890-3	chr17	71195377	71196377	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-8777.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	105.26	85.71	36.07	91.09	49.45	40.99	65.48	85.78	38.1
Merged-chr19-29512312-3	chr19	29511798	29512798	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 2 of 3)	L1MB2|LINE|L1	9689.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	35.47	28.57	33.3	51.95	31.72	55.46	54.92	34.49	31.85
Merged-chr15-6624546-3	chr15	6624041	6625041	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	29762.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	123.56	158.97	93.42	101.21	80.71	131.02	98.23	137.51	78.07
Merged-chr6-83868119-3	chr6	83867622	83868622	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36381.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	16.02	11.98	3.7	14.84	11.66	10.45	17.96	7.52	5.0
Merged-chr8-88229019-3	chr8	88228508	88229508	+	984.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	29795.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	16.59	17.51	27.75	9.45	9.8	23.31	21.12	15.92	16.24
Merged-chr9-65890243-3	chr9	65889762	65890762	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026515)	promoter-TSS (NM_026515)	-61.0	NM_026515	68026.0	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	8.58	5.99	6.47	6.07	5.6	4.82	7.39	9.29	3.75
Merged-chr5-96856765-3	chr5	96856264	96857264	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63379.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	28.03	27.19	35.15	64.1	28.92	56.27	26.4	16.36	21.86
Merged-chr19-6907757-3	chr19	6907248	6908248	+	983.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012021, intron 2 of 5)	intron (NM_012021, intron 2 of 5)	-1950.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	46.34	54.37	65.67	33.74	37.79	70.73	74.99	75.17	73.69
Merged-chr13-60660851-3	chr13	60660328	60661328	+	983.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	58617.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	39.47	50.23	35.15	98.51	84.9	90.83	29.57	19.9	18.74
Merged-chr2-83729549-3	chr2	83729059	83730059	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	5162.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	20.02	25.34	37.92	16.87	22.39	29.74	57.03	31.84	61.2
Merged-chr14-30613530-3	chr14	30613021	30614021	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-3211.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	25.17	32.72	28.67	48.58	41.99	61.89	74.99	56.6	30.6
Merged-chr8-124949501-3	chr8	124948997	124949997	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053207)	promoter-TSS (NM_053207)	-243.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	31.46	20.27	44.4	37.11	39.65	50.64	35.91	20.78	29.35
Merged-chr7-101837877-3	chr7	101837369	101838369	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122739)	promoter-TSS (NM_001122739)	-45.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	64.07	52.53	81.4	62.07	46.65	86.81	85.55	75.17	51.84
Merged-chr19-44009075-3	chr19	44008579	44009579	+	983.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167905, intron 7 of 7)	intron (NM_001167905, intron 7 of 7)	20168.0	NM_001001446	226143.0	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c23	AW107714|BC034834|Cyp2c44|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 23	protein-coding	22.31	10.6	9.25	21.59	11.66	14.47	15.84	19.46	6.25
Merged-chr9-101075449-3	chr9	101074965	101075965	+	983.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100451, intron 1 of 1)	CpG	703.0	NM_001100451	77853.0	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	MSL complex subunit 2	protein-coding	164.75	249.28	170.19	172.05	202.46	179.24	198.56	220.64	161.75
Merged-chr10-40098634-3	chr10	40098142	40099142	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	RSINE1|SINE|B4	43612.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	52.63	59.9	36.07	55.33	57.38	76.36	71.82	73.4	59.95
Merged-chr15-37006572-3	chr15	37006074	37007074	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026521, intron 1 of 3)	intron (NM_026521, intron 1 of 3)	828.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	200.22	269.1	216.44	186.22	209.46	174.42	258.77	250.27	168.0
Merged-chr5-29853247-3	chr5	29852758	29853758	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117322.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	42.33	55.75	65.67	64.1	42.92	72.34	68.65	46.43	53.71
Merged-chr16-49954005-1	chr16	49953505	49954505	+	983.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1825.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	2.86	6.45	1.85	4.72	6.53	6.43	2.11	0.88	3.75
Merged-chr10-66853421-3	chr10	66852917	66853917	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66967.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	302.62	315.18	129.49	338.71	377.87	242.74	369.66	446.15	149.26
Merged-chr13-105054487-3	chr13	105053977	105054977	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029879, exon 1 of 6)	5' UTR (NM_029879, exon 1 of 6)	453.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	8.01	4.15	3.7	24.96	12.13	14.47	8.45	3.1	8.12
Merged-chr16-51934187-3	chr16	51933682	51934682	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53105.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	8.01	6.45	1.85	12.82	9.8	3.22	6.34	8.84	9.37
Merged-chr19-42130895-3	chr19	42130398	42131398	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	109.26	99.53	71.22	113.35	73.24	93.24	57.03	57.04	40.59
Merged-chr6-145830364-3	chr6	145829873	145830873	+	983.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21990.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	7.44	3.23	4.62	5.4	3.27	6.43	1.06	3.1	0.0
Merged-chr14-14870672-3	chr14	14870158	14871158	+	983.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 21 of 34)	intron (NM_001195229, intron 21 of 34)	49843.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	69.22	80.64	49.02	12.14	10.26	16.08	4.22	5.75	5.62
Merged-chr2-90641595-3	chr2	90641096	90642096	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35619.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	45.76	37.32	37.0	77.59	70.91	59.48	33.8	43.33	36.85
Merged-chr1-69689170-3	chr1	69688664	69689664	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3204.0	NM_011770	22779.0	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	5.72	5.53	3.7	8.77	10.73	8.84	7.39	3.54	1.25
Merged-chr7-30589582-3	chr7	30589069	30590069	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290573)	promoter-TSS (NM_001290573)	189.0	NR_106134	102465774.0		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	41.19	63.59	56.42	59.38	62.51	92.44	60.2	55.27	45.59
Merged-chr5-138155819-3	chr5	138155327	138156327	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019747)	promoter-TSS (NM_019747)	-83.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	21.17	21.66	18.5	30.36	15.86	34.56	31.69	23.88	32.48
Merged-chr18-83830134-3	chr18	83829621	83830621	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	256441.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	15.45	5.07	1.85	17.54	6.53	10.45	10.56	5.31	4.37
Merged-chr7-101384685-3	chr7	101384198	101385198	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027180)	promoter-TSS (NM_027180)	-828.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	201.36	184.77	145.22	244.25	174.94	194.52	229.19	289.18	121.78
Merged-chr13-90516117-3	chr13	90515603	90516603	+	983.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	389252.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	4.58	3.69	0.92	24.96	18.19	22.51	15.84	7.07	8.74
Merged-chr2-20968595-4	chr2	20968026	20969026	+	983.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033225)	promoter-TSS (NR_033225)	-348.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	131.0	69.58	90.65	184.87	90.97	90.02	145.75	54.83	79.94
Merged-chr2-143948151-3	chr2	143947644	143948644	+	983.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 23 of 23)	intron (NM_024281, intron 23 of 23)	32813.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	26.31	23.04	41.62	29.69	15.86	21.7	29.57	26.97	16.24
Merged-chr1-162563436-3	chr1	162562937	162563937	+	983.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7078.0	NM_001356527	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	20.02	16.59	12.95	9.45	9.8	4.82	17.96	26.97	23.11
Merged-chr9-121642151-3	chr9	121641644	121642644	+	983.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011703)	promoter-TSS (NM_011703)	-48.0	NM_001357346	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	41.76	25.8	18.5	35.76	32.19	16.88	49.64	34.05	11.24
Merged-chr2-165878253-3	chr2	165877748	165878748	+	983.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	189.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	64.64	69.12	65.67	61.4	48.05	36.17	82.38	81.36	79.32
Merged-chr1-89902385-3	chr1	89901885	89902885	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28791.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	13.73	9.22	17.57	12.82	17.26	24.11	8.45	11.5	14.36
Merged-chr4-142074266-3	chr4	142073799	142074799	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	-9999.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	55.49	52.99	61.97	52.63	52.25	62.7	77.1	83.13	53.08
Merged-chr14-30761428-3	chr14	30760931	30761931	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	L2a|LINE|L2	45816.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	70.93	57.6	55.5	88.39	46.65	65.11	31.69	26.53	33.72
Merged-chr6-37426027-3	chr6	37425542	37426542	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	MT2B2|LTR|ERVL	16106.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	73.22	63.59	45.32	63.42	45.72	46.62	79.21	96.83	61.83
Merged-chr2-166730757-3	chr2	166730256	166731256	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16924.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	159.03	90.31	51.8	237.5	125.02	61.09	184.83	175.1	66.82
Merged-chr1-142468496-1	chr1	142467996	142468996	+	983.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1172201.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	2.86	8.29	10.17	12.14	17.73	12.86	9.51	7.96	8.74
Merged-chr4-63402278-3	chr4	63401763	63402763	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	1182.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	257.42	203.21	194.24	226.03	127.36	180.05	247.15	221.97	172.37
Merged-chr6-124787201-1	chr6	124786701	124787701	+	983.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7474.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	13.73	8.29	16.65	8.1	11.2	4.82	5.28	5.75	1.25
Merged-chr11-94392558-1	chr11	94392058	94393058	+	983.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	418.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	98.97	98.61	102.67	114.03	94.23	128.61	104.56	109.66	95.55
Merged-chr8-95000816-3	chr8	95000309	95001309	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	16410.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	18.88	14.28	12.02	18.89	13.53	11.25	7.39	12.82	26.85
Merged-chr15-67118558-3	chr15	67118063	67119063	+	983.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	58319.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	67.5	45.16	30.52	92.44	53.65	82.79	47.53	27.86	33.1
Merged-chr14-51896048-2	chr14	51895553	51896553	+	983.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001039676, exon 4 of 4)	3' UTR (NM_001039676, exon 4 of 4)	2443.0	NM_001039676	214922.0	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	29.17	24.42	17.57	17.54	17.26	16.08	4.22	0.0	1.25
Merged-chr2-131254144-3	chr2	131253653	131254653	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7855.0	NM_001355681	74450.0	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	29.17	17.51	10.17	28.34	16.79	17.68	25.35	20.34	6.87
Merged-chr3-52196434-3	chr3	52195897	52196897	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71940.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	14.87	7.37	11.1	8.1	7.46	7.23	13.73	10.17	5.62
Merged-chr9-98297409-3	chr9	98296911	98297911	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	MTD|LTR|ERVL-MaLR	841.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	131.0	148.37	97.12	199.72	322.82	206.57	188.0	224.62	94.93
Merged-chr10-117764766-3	chr10	117764256	117765256	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 19 of 27)	RSINE1|SINE|B4	-18398.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	24.6	19.81	31.45	31.71	20.06	24.92	45.42	21.67	19.98
Merged-chr11-81973837-3	chr11	81973331	81974331	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5435.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	29.17	20.74	12.95	26.99	16.79	6.43	10.56	4.42	4.37
Merged-chr16-21400109-3	chr16	21399619	21400619	+	983.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22999.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.72	4.61	13.87	6.07	1.4	1.61	6.34	3.98	5.0
Merged-chr4-155770202-5	chr4	155769715	155770715	+	983.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_147776, exon 4 of 4)	3' UTR (NM_147776, exon 4 of 4)	4346.0	NM_147776	246228.0	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	94.96	60.82	74.0	85.69	62.05	94.85	83.44	58.81	53.08
Merged-chr1-139003748-3	chr1	139003265	139004265	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	26108.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	21.74	21.66	13.87	20.24	21.93	3.22	13.73	7.52	12.49
Merged-chr8-77421302-3	chr8	77420797	77421797	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95759.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	10.3	10.14	3.7	16.87	16.79	14.47	9.51	9.29	2.5
Merged-chr8-69081623-3	chr8	69081135	69082135	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153054, intron 1 of 16)	intron (NM_153054, intron 1 of 16)	-7101.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	14.3	14.28	16.65	31.71	20.06	36.17	26.4	27.41	13.74
Merged-chr2-126607698-3	chr2	126607181	126608181	+	983.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 2 of 11)	intron (NM_008230, intron 2 of 11)	10997.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	38.33	45.16	48.1	60.72	34.99	47.42	50.7	61.46	27.48
Merged-chr4-103214749-3	chr4	103214227	103215227	+	983.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356276, exon 1 of 12)	exon (NM_001356276, exon 1 of 12)	449.0	NM_001356276	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	90.96	79.72	131.34	77.59	71.84	90.02	123.57	56.6	49.34
Merged-chr17-6477295-3	chr17	6476793	6477793	+	983.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26299.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	231.68	173.72	165.57	367.05	349.41	250.78	60.2	50.41	21.86
Merged-chr2-116894791-3	chr2	116894284	116895284	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5368.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	18.31	13.36	2.77	15.52	9.33	6.43	20.07	10.61	8.12
Merged-chr8-84974990-3	chr8	84974502	84975502	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011563)	TTS (NM_011563)	3746.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	210.52	198.14	135.97	157.88	132.49	123.78	210.18	282.99	106.79
Merged-chr3-65941233-3	chr3	65940733	65941733	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	17016.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	20.02	15.67	7.4	15.52	14.93	9.65	16.9	12.38	8.74
Merged-chr2-14252247-3	chr2	14251737	14252737	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 4 of 29)	intron (NM_008625, intron 4 of 29)	-8766.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	35.47	44.7	21.27	30.36	22.86	28.13	45.42	31.39	24.98
Merged-chr15-27922376-3	chr15	27921867	27922867	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	103481.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	46.91	38.71	31.45	55.33	41.52	30.54	54.92	35.82	27.48
Merged-chr1-79669773-2	chr1	79669251	79670251	+	983.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	2221.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	8.01	5.53	12.95	6.07	4.2	8.84	9.51	3.1	2.5
Merged-chr9-45294507-5	chr9	45294027	45295027	+	983.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24573.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	125.28	121.65	97.12	177.45	143.68	84.4	139.42	132.21	71.2
Merged-chr13-113444670-3	chr13	113444193	113445193	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR40b|LTR|ERVL	58151.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	18.88	17.05	24.05	15.52	9.8	11.25	17.96	8.84	4.37
Merged-chr9-66383545-3	chr9	66383042	66384042	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 3 of 77)	T-rich|Low_complexity|Low_complexity	33092.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	9.72	18.43	9.25	12.82	16.79	10.45	7.39	12.38	21.23
Merged-chr6-52672817-3	chr6	52672350	52673350	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-32550.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	9.72	5.53	7.4	4.05	5.6	5.63	8.45	2.21	3.75
Merged-chr5-115279734-3	chr5	115279234	115280234	+	983.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026504)	promoter-TSS (NM_026504)	32.0	NM_026504	52064.0	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	294.61	266.79	162.79	292.15	258.45	142.27	215.46	232.58	119.91
Merged-chr5-25100844-3	chr5	25100354	25101354	+	983.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	-121.0	NR_027851	67261.0	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	41.19	29.95	25.9	139.67	105.9	166.38	50.7	29.18	36.22
Merged-chr16-23612184-3	chr16	23611667	23612667	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	(A)n|Simple_repeat|Simple_repeat	2248.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	46.34	50.23	45.32	44.53	51.32	61.89	60.2	96.83	39.97
Merged-chr8-53607280-3	chr8	53606807	53607807	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 5 of 9)	intron (NM_146208, intron 5 of 9)	31758.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	5.72	6.45	2.77	2.7	2.8	4.82	5.28	6.63	6.25
Merged-chr2-48924957-3	chr2	48924476	48925476	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149356, intron 8 of 13)	intron (NR_149356, intron 8 of 13)	24291.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	27.46	33.64	20.35	21.59	33.59	49.83	29.57	36.26	35.6
Merged-chr11-62541755-3	chr11	62541261	62542261	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-2500.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	62.93	52.99	16.65	79.62	29.86	31.35	45.42	40.68	23.73
Merged-chr11-102411928-3	chr11	102411442	102412442	+	983.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-4425.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	22.88	11.52	14.8	16.87	8.86	12.06	12.67	7.52	1.25
Merged-chr10-122039772-3	chr10	122039291	122040291	+	983.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	L1M5|LINE|L1	7524.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.15	9.22	9.25	10.8	15.39	14.47	6.34	14.15	12.49
Merged-chr4-140674434-2	chr4	140673925	140674925	+	983.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8520.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.58	2.3	11.1	2.02	0.93	0.0	2.11	2.65	0.0
Merged-chr6-116083443-3	chr6	116082966	116083966	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-88461.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	9.15	9.22	0.0	15.52	15.86	24.11	12.67	5.75	6.25
Merged-chr13-40944230-3	chr13	40943717	40944717	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	B4|SINE|B4	26583.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	11.44	5.07	5.55	18.89	9.8	5.63	11.62	11.05	11.87
Merged-chr5-125364101-3	chr5	125363600	125364600	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23006.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	37.76	40.09	58.27	40.48	34.52	56.27	28.52	31.39	34.35
Merged-chr8-106007338-1	chr8	106006838	106007838	+	983.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	-4140.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	3.43	3.69	0.0	8.1	4.67	9.65	4.22	2.65	1.25
Merged-chr7-110860347-1	chr7	110859847	110860847	+	983.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053247, intron 1 of 5)	MIRb|SINE|MIR	2606.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	4.0	6.91	1.85	9.45	4.67	3.22	4.22	0.44	2.5
Merged-chr2-83742372-3	chr2	83741865	83742865	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	Charlie24|DNA|hAT-Charlie	17968.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	26.31	21.2	20.35	22.94	10.73	28.94	21.12	15.48	14.99
Merged-chr11-102697755-3	chr11	102697229	102698229	+	983.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025918)	promoter-TSS (NM_025918)	-4.0	NM_025918	52715.0	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	23.45	22.58	21.27	17.54	16.33	41.8	86.61	68.09	23.11
Merged-chr17-30027875-3	chr17	30027383	30028383	+	983.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	22844.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	35.47	28.57	23.12	26.31	10.73	22.51	29.57	49.52	29.35
Merged-chr10-70257293-3	chr10	70256804	70257804	+	983.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	12028.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	26.31	25.8	33.3	35.09	29.86	29.74	36.97	20.78	27.48
Merged-chr5-113872413-2	chr5	113871942	113872942	+	983.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	36264.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	2.29	1.84	1.85	29.01	23.33	17.68	10.56	7.07	11.87
Merged-chr8-94172598-3	chr8	94172036	94173036	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-82.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	29.75	12.9	6.47	35.76	23.79	4.02	28.52	22.11	5.0
Merged-chr3-87330950-3	chr3	87330347	87331347	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27034.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	98.39	73.26	43.47	89.74	53.65	69.13	105.62	76.49	44.34
Merged-chr12-118758242-3	chr12	118757725	118758725	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88104.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	8.58	5.07	4.62	6.07	5.6	7.23	6.34	1.77	9.99
Merged-chr8-10711234-3	chr8	10710735	10711735	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171219.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	11.44	17.97	9.25	34.41	24.26	41.8	14.79	10.17	9.99
Merged-chr5-101826682-3	chr5	101826197	101827197	+	983.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	61567.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	14.3	10.6	5.55	14.17	9.8	6.43	15.84	9.73	8.74
Merged-chr5-99325996-3	chr5	99325501	99326501	+	983.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-73074.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	271.15	349.74	147.99	282.03	332.62	181.66	250.32	312.61	119.28
Merged-chr8-86873274-3	chr8	86872771	86873771	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11987.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	75.51	70.96	62.9	53.98	46.65	85.2	53.87	69.86	48.09
Merged-chr3-95987081-3	chr3	95986583	95987583	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045872)	TTS (NR_045872)	1573.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	178.48	238.23	222.91	174.75	182.4	178.44	303.13	328.97	123.66
Merged-chr9-21901639-2	chr9	21901135	21902135	+	983.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16548.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	24.6	10.6	16.65	12.82	6.06	18.49	19.01	16.8	0.62
Merged-chr8-73234184-3	chr8	73233685	73234685	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	119355.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	14.87	32.25	35.15	37.78	17.26	42.6	52.81	32.72	22.48
Merged-chr10-57791507-3	chr10	57791015	57792015	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3029.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	33.18	46.08	49.95	43.18	41.52	65.91	47.53	38.47	61.2
Merged-chr3-59205717-3	chr3	59205226	59206226	+	983.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	5156.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	212.8	262.65	140.59	240.87	199.2	162.37	188.0	229.04	113.04
Merged-chr2-34780674-3	chr2	34780165	34781165	+	983.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145522, exon 7 of 8)	exon (NM_145522, exon 7 of 8)	8575.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	26.31	8.29	14.8	8.77	0.93	6.43	6.34	5.31	2.5
Merged-chr13-113359070-2	chr13	113358591	113359591	+	983.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	143753.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	10.87	23.04	22.2	23.62	26.59	24.92	45.42	57.92	50.59
Merged-chr9-118607426-4	chr9	118606979	118607979	+	983.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	770.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	215.09	211.5	197.02	245.6	248.65	254.8	258.77	249.38	166.75
Merged-chr10-57759154-3	chr10	57758656	57759656	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25767.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	27.46	30.41	17.57	41.16	18.19	32.15	24.29	31.39	19.36
Merged-chr11-97029963-3	chr11	97029480	97030480	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146027)	promoter-TSS (NM_146027)	28.0	NM_146027	217140.0	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	20.59	11.06	9.25	16.87	20.53	12.86	10.56	11.5	20.61
Merged-chr8-24547459-3	chr8	24546960	24547960	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 5 of 9)	Lx5c|LINE|L1	28873.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.57	3.23	0.92	4.05	1.87	4.82	4.22	1.77	1.87
Merged-chr10-21991540-3	chr10	21991042	21992042	+	983.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-681.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	90.96	79.72	71.22	124.15	87.24	158.35	133.08	160.06	88.68
Merged-chr11-78213270-3	chr11	78212776	78213776	+	983.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009297, exon 29 of 37)	exon (NM_009297, exon 29 of 37)	19884.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	56.63	32.72	43.47	37.11	30.79	28.94	46.47	35.37	17.49
Merged-chr3-137955675-3	chr3	137955183	137956183	+	983.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	MIR|SINE|MIR	25866.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	87.52	63.59	23.12	81.64	49.92	56.27	88.72	84.45	26.85
Merged-chr12-52637952-3	chr12	52637451	52638451	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-35629.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	5.15	2.76	6.47	9.45	0.93	4.82	5.28	3.98	8.74
Merged-chr1-173961667-3	chr1	173961198	173962198	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011940)	TTS (NM_011940)	-19026.0	NM_001302650	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	53.77	65.43	12.95	232.1	194.07	94.04	29.57	22.11	8.74
Merged-chr1-165583725-3	chr1	165583224	165584224	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50817.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.58	2.3	1.85	6.75	0.0	4.82	2.11	4.42	2.5
Merged-chr3-38116223-3	chr3	38115731	38116731	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91888.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	30.32	44.7	14.8	15.52	17.26	25.72	40.14	18.57	19.36
Merged-chr2-77309511-3	chr2	77309025	77310025	+	983.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28933.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.43	4.15	7.4	6.07	1.87	0.0	2.11	0.88	0.0
Merged-chr8-81756852-1	chr8	81756352	81757352	+	983.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	414290.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.15	0.46	5.55	2.7	0.93	0.0	3.17	0.44	1.25
Merged-chr2-72285950-5	chr2	72285459	72286459	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	CpG	258.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	247.13	229.47	134.12	250.32	168.88	169.6	208.07	148.57	76.82
Merged-chr4-45966174-3	chr4	45965680	45966680	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290475, intron 1 of 16)	intron (NM_001290475, intron 1 of 16)	845.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	5.72	5.07	3.7	8.1	3.27	8.84	8.45	2.21	1.25
Merged-chr1-181840175-3	chr1	181839669	181840669	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133815, intron 1 of 13)	intron (NM_133815, intron 1 of 13)	2232.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	19.45	23.04	24.05	14.84	23.33	16.08	23.24	25.2	17.49
Merged-chr16-33583963-3	chr16	33583357	33584357	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	65262.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	34.9	31.79	16.65	53.98	44.32	65.91	60.2	53.94	38.72
Merged-chr7-81196824-3	chr7	81196317	81197317	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16987.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	26.31	13.82	3.7	16.19	17.26	9.65	21.12	19.9	12.49
Merged-chrX-106148416-3	chrX	106147915	106148915	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	5140.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	53.77	56.22	37.92	90.41	42.92	59.48	70.76	47.31	30.6
Merged-chr9-22824014-1	chr9	22823514	22824514	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	348299.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	1.72	0.46	9.25	2.7	4.67	3.22	1.06	2.21	1.87
Merged-chr9-77544861-3	chr9	77544355	77545355	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172528)	promoter-TSS (NM_172528)	-3.0	NM_001146048	214345.0	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	2.86	2.76	1.85	12.14	2.8	2.41	4.22	3.1	1.87
Merged-chr11-101642065-3	chr11	101641604	101642604	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14155.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	224.82	192.15	119.32	139.67	110.56	73.14	118.29	121.15	75.57
Merged-chr8-10139774-2	chr8	10139267	10140267	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-14144.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	1.72	5.53	0.0	7.42	10.73	3.22	20.07	14.15	3.12
Merged-chr10-84516630-3	chr10	84516136	84517136	+	983.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17252.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	7.44	3.69	5.55	10.8	2.8	1.61	4.22	8.4	3.75
Merged-chr9-59544449-1	chr9	59543949	59544949	+	983.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	4909.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	163.04	131.78	117.47	174.75	109.16	127.8	145.75	153.87	89.31
Merged-chr1-91498805-3	chr1	91498298	91499298	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028718, intron 2 of 14)	intron (NM_028718, intron 2 of 14)	4130.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	9.15	13.82	7.4	18.89	16.79	16.08	15.84	15.92	8.12
Merged-chr1-172348228-3	chr1	172347706	172348706	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	6996.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	135.0	113.81	81.4	138.99	119.89	127.8	185.89	146.8	64.33
Merged-chr19-53421444-3	chr19	53420917	53421917	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30783.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	9.15	7.37	1.85	22.94	23.33	9.65	7.39	2.21	1.25
Merged-chr16-17209192-3	chr16	17208677	17209677	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033338, exon 1 of 1)	exon (NM_001033338, exon 1 of 1)	1042.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	8.01	3.23	0.0	10.12	4.67	3.22	6.34	5.31	3.75
Merged-chr11-29654023-3	chr11	29653524	29654524	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-38874.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	18.31	10.6	16.65	35.09	39.19	54.66	31.69	38.91	25.61
Merged-chr4-59575713-3	chr4	59575205	59576205	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5858.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	13.73	11.52	7.4	17.54	7.93	8.04	9.51	6.19	1.25
Merged-chr18-34888703-3	chr18	34888216	34889216	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27509.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	32.04	8.75	13.87	19.57	10.73	11.25	17.96	15.92	6.25
Merged-chr6-125294194-3	chr6	125293695	125294695	+	982.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-8114.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	34.9	36.4	26.82	58.7	31.26	23.31	69.71	70.3	41.22
Merged-chr5-124075080-3	chr5	124074607	124075607	+	982.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20691.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	16.02	13.36	14.8	51.28	16.33	18.49	14.79	15.03	7.49
Merged-chr1-105866893-3	chr1	105866381	105867381	+	982.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86158.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	16.02	27.65	12.95	22.27	21.46	24.11	30.63	31.84	16.24
Merged-chr14-44091723-3	chr14	44091225	44092225	+	982.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-10929.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	33.75	18.43	14.8	16.87	16.79	24.92	20.07	18.13	9.37
Merged-chr9-14884850-2	chr9	14884355	14885355	+	982.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176807)	TTS (NM_176807)	19096.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	14.3	9.22	3.7	14.84	16.33	21.7	13.73	15.92	8.12
Merged-chr11-87527585-3	chr11	87527081	87528081	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 18 of 30)	RMER1C|Other|Other	-50808.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	6.86	6.45	0.92	6.07	8.4	4.82	6.34	7.07	5.0
Merged-chr13-110684615-3	chr13	110684124	110685124	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218875.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	8.01	6.45	0.0	11.47	9.8	8.84	15.84	3.54	3.75
Merged-chr11-44476629-3	chr11	44476113	44477113	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6065.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	17.73	17.05	9.25	14.17	14.0	16.88	10.56	16.36	8.74
Merged-chr4-9650889-3	chr4	9650386	9651386	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTB_Mm|LTR|ERVL-MaLR	-7169.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	22.31	13.36	28.67	15.52	14.46	9.65	49.64	53.94	36.22
Merged-chr8-117519144-3	chr8	117518666	117519666	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	20891.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	35.47	30.87	22.2	38.46	26.12	21.7	25.35	24.32	18.74
Merged-chr14-17903229-3	chr14	17902719	17903719	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-78425.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	45.76	49.76	48.1	53.98	42.45	49.03	68.65	63.23	35.6
Merged-chr17-64600105-3	chr17	64599588	64600588	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-1561.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	106.4	119.8	95.27	76.24	99.83	116.55	92.94	143.7	86.81
Merged-chr11-82570867-3	chr11	82570357	82571357	+	982.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62496.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	217.38	240.07	217.36	172.05	141.82	171.21	227.08	266.18	132.4
Merged-chrX-75155765-3	chrX	75155260	75156260	+	982.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033786, intron 2 of 4)	intron (NM_001033786, intron 2 of 4)	7991.0	NM_001033786	434800.0	Mm.460747	NM_001033786	ENSMUSG00000073094	Smim9	4930428E23Rik	small integral membrane protein 9	protein-coding	15.45	6.45	5.55	9.45	3.73	5.63	9.51	2.21	1.25
Merged-chr17-72916012-1	chr17	72915512	72916512	+	982.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2293.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.58	2.3	1.85	14.17	6.53	11.25	3.17	5.31	8.74
Merged-chr11-100441104-3	chr11	100440595	100441595	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026561)	promoter-TSS (NM_026561)	-6.0	NM_001102650	68106.0	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	22.31	9.22	18.5	29.69	16.79	11.25	20.07	15.92	17.49
Merged-chr10-128211833-3	chr10	128211333	128212333	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025716)	promoter-TSS (NM_025716)	-39.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	33.75	25.8	24.97	30.36	20.99	28.94	68.65	44.66	38.72
Merged-chr11-43755601-3	chr11	43755095	43756095	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7622.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	16.59	9.68	14.8	11.47	11.66	11.25	14.79	14.59	9.99
Merged-chr4-138041732-3	chr4	138041201	138042201	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43876.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	94.39	72.8	59.2	74.22	58.78	67.52	99.28	107.0	52.46
Merged-chr9-40727742-2	chr9	40727238	40728238	+	982.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MTC|LTR|ERVL-MaLR	41774.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	27.46	25.34	12.95	28.34	15.39	20.9	3.17	0.88	3.75
Merged-chr7-132339601-3	chr7	132339099	132340099	+	982.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22371.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	12.01	6.91	6.47	8.77	1.87	8.04	4.22	3.54	1.87
Merged-chr14-118910643-4	chr14	118910132	118911132	+	982.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360412, intron 8 of 22)	L1MC3|LINE|L1	12159.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	125.28	113.35	51.8	139.67	74.64	53.85	145.75	113.64	45.59
Merged-chr17-80731273-3	chr17	80730778	80731778	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3253.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	29.75	44.24	30.52	22.27	21.46	19.29	32.74	36.7	24.98
Merged-chr2-132695792-3	chr2	132695177	132696177	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	5079.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	100.11	104.14	49.02	138.32	146.95	90.02	145.75	168.47	111.79
Merged-chr14-118768166-3	chr14	118767666	118768666	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19705.0	NM_001160098	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	6.29	2.76	3.7	2.7	1.4	1.61	4.22	1.77	4.37
Merged-chr13-81350363-3	chr13	81349843	81350843	+	982.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	intron (NM_054053, intron 83 of 89)	282801.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	20.02	12.9	18.5	30.36	20.99	22.51	19.01	13.71	13.12
Merged-chr3-138118577-3	chr3	138118081	138119081	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	13072.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	104.69	146.53	93.42	183.52	168.41	126.19	106.67	107.89	57.46
Merged-chr9-77751331-3	chr9	77750832	77751832	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3203.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	117.27	165.42	113.77	149.79	164.68	163.97	162.65	130.88	114.29
Merged-chr5-81044091-3	chr5	81043585	81044585	+	982.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	22492.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	17.16	26.26	14.8	19.57	20.53	12.86	10.56	12.38	5.0
Merged-chr14-30944306-5	chr14	30943807	30944807	+	982.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1018.0	NM_001306078	16424.0	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	106.4	103.22	48.1	152.49	170.28	110.92	164.76	168.47	80.56
Merged-chr19-34240778-3	chr19	34240279	34241279	+	982.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360716)	TTS (NM_001360716)	8154.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	9.72	11.52	9.25	8.77	5.13	8.04	19.01	23.88	13.74
Merged-chr10-68737508-3	chr10	68737018	68738018	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	13772.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	36.61	29.49	27.75	62.75	52.72	40.19	86.61	73.4	39.97
Merged-chr13-51839471-3	chr13	51838984	51839984	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7191.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	15.45	11.06	12.02	20.24	16.79	12.86	17.96	7.52	3.75
Merged-chr8-91411859-1	chr8	91411359	91412359	+	982.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011936, intron 3 of 8)	intron (NM_011936, intron 3 of 8)	98334.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	5.72	1.38	3.7	12.82	6.06	8.04	0.0	2.65	5.62
Merged-chr19-29253027-3	chr19	29252541	29253541	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008413, intron 2 of 24)	intron (NM_008413, intron 2 of 24)	1238.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	121.85	158.05	110.07	101.88	89.1	135.84	104.56	149.89	93.68
Merged-chr18-36296653-3	chr18	36296158	36297158	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3443.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	49.2	46.54	24.05	31.71	35.45	44.21	82.38	77.38	43.09
Merged-chr12-78749444-3	chr12	78748900	78749900	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	CpG	453.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	249.99	217.95	108.22	283.38	299.03	186.48	237.64	214.89	99.92
Merged-chr5-102053060-3	chr5	102052565	102053565	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	16856.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	111.55	103.22	139.67	143.04	78.37	135.04	194.34	163.16	76.19
Merged-chr13-105047489-3	chr13	105046971	105047971	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	7459.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	14.87	8.29	5.55	17.54	8.86	18.49	7.39	2.21	1.87
Merged-chr6-54934051-3	chr6	54933572	54934572	+	982.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 8 of 11)	intron (NM_001171007, intron 8 of 11)	37589.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	39.47	38.25	29.6	40.48	32.19	45.82	38.02	37.14	45.59
Merged-chr1-127975774-2	chr1	127975262	127976262	+	982.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 13 of 20)	intron (NM_001285945, intron 13 of 20)	106989.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	28.03	19.35	11.1	48.58	30.32	23.31	61.26	52.62	16.24
Merged-chr11-28365539-2	chr11	28365033	28366033	+	982.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	218791.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	3.43	5.07	1.85	13.49	5.13	3.22	2.11	1.77	1.25
Merged-chr7-117470475-5	chr7	117469961	117470961	+	982.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	89482.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	36.04	30.87	12.95	36.43	46.18	35.37	8.45	3.98	9.99
Merged-chr14-17569462-3	chr14	17568974	17569974	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91486.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.86	3.69	5.55	6.07	4.2	0.8	5.28	3.1	5.0
Merged-chr6-40595356-3	chr6	40594858	40595858	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9553.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	10.87	17.97	5.55	14.17	9.8	12.86	7.39	14.59	8.74
Merged-chr11-69931162-3	chr11	69930650	69931650	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4749.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	48.05	38.71	22.2	20.24	18.66	30.54	13.73	25.2	18.11
Merged-chr12-28675329-3	chr12	28674859	28675859	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134052, exon 1 of 4)	exon (NM_134052, exon 1 of 4)	152.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	62.35	56.68	37.0	101.21	78.37	82.79	191.17	157.85	84.31
Merged-chr7-101450590-3	chr7	101450099	101451099	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001143849)	promoter-TSS (NM_001143849)	79.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	26.89	16.59	22.2	26.31	24.26	17.68	8.45	6.19	6.25
Merged-chr2-75978213-3	chr2	75977718	75978718	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081228)	promoter-TSS (NM_001081228)	-39.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	16.02	11.06	9.25	6.07	5.6	9.65	11.62	5.75	6.25
Merged-chr10-59268249-3	chr10	59267750	59268750	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	46328.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	58.35	32.72	37.0	36.43	29.39	25.72	69.71	59.25	37.47
Merged-chr14-9411989-3	chr14	9411477	9412477	+	982.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-472118.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	13.16	16.13	27.75	16.87	26.12	13.66	11.62	21.67	18.74
Merged-chr17-8802374-3	chr17	8801871	8802871	+	982.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	CpG	626.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	43.48	24.42	21.27	52.63	32.19	35.37	10.56	5.75	7.49
Merged-chr3-41566156-3	chr3	41565648	41566648	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	CpG	1268.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	58.35	27.19	43.47	58.03	34.52	35.37	92.94	42.89	34.35
Merged-chr4-155833993-3	chr4	155833503	155834503	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025338)	TTS (NM_025338)	2734.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	9.15	6.91	2.77	7.42	5.6	7.23	10.56	5.31	9.99
Merged-chr9-69656239-3	chr9	69655755	69656755	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104685.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	4.0	2.76	7.4	4.05	3.73	6.43	3.17	2.65	3.75
Merged-chr1-156473189-3	chr1	156472653	156473653	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	1175.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	177.34	160.35	111.92	235.48	199.67	123.78	268.27	251.15	92.43
Merged-chr9-45250071-3	chr9	45249568	45250568	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198971)	TTS (NM_001198971)	16639.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	109.26	100.45	97.12	130.9	105.43	116.55	108.79	130.88	94.3
Merged-chr18-65632102-3	chr18	65631576	65632576	+	982.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207255, intron 3 of 5)	intron (NM_207255, intron 3 of 5)	-12461.0	NR_105742	100526497.0		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	11.44	13.36	13.87	12.82	7.46	21.7	10.56	3.98	9.37
Merged-chr14-70578469-2	chr14	70577950	70578950	+	982.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360474, exon 1 of 3)	5' UTR (NM_001360474, exon 1 of 3)	351.0	NM_001360474	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	224.82	273.71	186.84	246.95	302.3	160.76	189.06	189.69	84.94
Merged-chr1-151270818-3	chr1	151270317	151271317	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-73669.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	37.18	37.32	29.6	70.85	44.32	46.62	63.37	44.22	38.72
Merged-chr11-3148300-2	chr11	3147787	3148787	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	B1F|SINE|Alu	24266.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	65.79	80.64	97.12	67.47	88.64	134.23	3.17	2.65	138.02
Merged-chr4-129877418-3	chr4	129876916	129877916	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28810.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	136.72	153.44	137.82	145.06	125.02	149.5	190.11	172.0	150.51
Merged-chr9-23594832-3	chr9	23594325	23595325	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	371749.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	16.59	31.33	24.05	18.89	17.73	28.13	32.74	30.07	16.24
Merged-chr4-129031624-3	chr4	129031116	129032116	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26655.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	152.74	116.58	70.3	138.99	73.71	67.52	119.35	111.43	90.56
Merged-chr1-173977830-3	chr1	173977331	173978331	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	5013.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	18.31	17.05	15.72	62.75	55.98	42.6	4.22	3.1	7.49
Merged-chr6-92987939-1	chr6	92987439	92988439	+	982.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47357.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	13.73	14.75	0.92	72.19	71.84	41.8	2.11	0.44	0.0
Merged-chr13-93498968-3	chr13	93498475	93499475	+	982.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021310, exon 1 of 11)	exon (NM_021310, exon 1 of 11)	833.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	238.55	219.33	182.22	245.6	312.56	163.97	245.04	237.0	108.04
Merged-chr2-91730347-4	chr2	91729835	91730835	+	982.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172669, exon 1 of 18)	5' UTR (NM_172669, exon 1 of 18)	197.0	NM_001080754	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	97.82	90.31	129.49	93.11	102.17	117.35	125.69	114.96	81.81
Merged-chr1-152613836-3	chr1	152613310	152614310	+	982.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	11407.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	143.59	160.35	95.27	144.39	133.42	120.57	143.64	156.53	83.69
Merged-chr11-97280471-4	chr11	97279997	97280997	+	982.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008942)	promoter-TSS (NM_008942)	79.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	76.66	61.75	114.69	126.85	70.44	125.39	124.63	55.71	49.34
Merged-chr11-75165516-3	chr11	75165017	75166017	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001098203, exon 2 of 2)	exon (NM_001098203, exon 2 of 2)	2635.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	65.79	43.31	54.57	52.63	40.12	50.64	40.14	36.26	31.85
Merged-chr1-159225649-3	chr1	159225140	159226140	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	8.58	13.36	7.4	12.14	14.93	11.25	6.34	4.86	4.37
Merged-chr2-32960463-3	chr2	32959979	32960979	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199302, intron 1 of 24)	MIRb|SINE|MIR	776.0	NM_199302	227738.0	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	36.61	18.89	16.65	50.6	23.33	25.72	44.36	35.82	12.49
Merged-chr8-71665778-3	chr8	71665289	71666289	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 3 of 41)	intron (NM_001029873, intron 3 of 41)	5968.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	5.15	0.0	5.55	8.1	1.4	4.82	8.45	8.4	3.12
Merged-chr4-129020634-3	chr4	129020127	129021127	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27403.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	14.87	8.29	9.25	8.1	7.0	3.22	9.51	3.98	6.87
Merged-chr5-72195620-3	chr5	72195136	72196136	+	982.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-7693.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	14.87	17.05	14.8	16.19	13.53	8.04	14.79	9.73	7.49
Merged-chr4-59407953-3	chr4	59407461	59408461	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 5 of 16)	L1MA5|LINE|L1	30672.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	8.58	9.22	10.17	10.12	5.13	1.61	10.56	2.65	10.62
Merged-chr12-36380408-3	chr12	36379895	36380895	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1055.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	58.35	69.58	45.32	47.23	38.72	29.74	151.03	152.55	26.23
Merged-chr1-134785091-3	chr1	134784583	134785583	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	18638.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	96.68	119.34	63.82	41.83	22.86	32.15	33.8	17.69	31.23
Merged-chr9-32541426-3	chr9	32540944	32541944	+	982.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008026)	promoter-TSS (NM_008026)	8.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	312.91	299.51	279.34	277.31	244.45	268.47	226.02	261.32	169.87
Merged-chr2-136678879-1	chr2	136678379	136679379	+	982.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34571.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.58	8.29	3.7	20.92	25.66	30.54	9.51	0.44	3.12
Merged-chr4-43005901-3	chr4	43005394	43006394	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053081, intron 8 of 13)	intron (NM_053081, intron 8 of 13)	4407.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	12.59	9.22	5.55	10.8	0.93	2.41	6.34	2.21	8.74
Merged-chr3-121371630-3	chr3	121371132	121372132	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54909.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	19.45	16.59	17.57	34.41	20.06	20.09	31.69	42.89	19.36
Merged-chr7-99401595-3	chr7	99401087	99402087	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201352, intron 2 of 17)	MIR|SINE|MIR	20069.0	NM_001362166	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	21.17	9.22	0.0	39.81	10.73	8.84	17.96	13.27	3.75
Merged-chr8-110395998-1	chr8	110395498	110396498	+	982.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 12 of 86)	intron (NM_172916, intron 12 of 86)	106358.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	10.3	5.07	7.4	2.7	3.73	4.82	19.01	9.29	13.12
Merged-chr5-130089808-3	chr5	130089337	130090337	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10467.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	25.17	26.73	37.0	32.39	33.12	31.35	31.69	35.82	19.98
Merged-chr10-41571225-3	chr10	41570741	41571741	+	982.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 36 of 47)	intron (NM_001358562, intron 36 of 47)	3225.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	32.61	19.35	10.17	18.22	8.86	8.84	22.18	27.86	23.73
Merged-chr13-23702898-3	chr13	23702387	23703387	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010424, exon 6 of 6)	3' UTR (NM_010424, exon 6 of 6)	-4429.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	44.05	54.83	35.15	38.46	39.65	65.91	91.89	107.45	93.05
Merged-chr2-11705302-3	chr2	11704788	11705788	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133836)	promoter-TSS (NM_133836)	-5.0	NM_001271498	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	129.86	114.74	99.89	122.8	115.23	94.04	101.39	107.45	74.32
Merged-chr9-124121489-3	chr9	124120979	124121979	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009917)	promoter-TSS (NM_009917)	-64.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	204.22	266.33	105.44	175.43	191.73	111.73	238.7	262.21	116.16
Merged-chrX-71053952-3	chrX	71053440	71054440	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	3684.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	40.04	44.24	31.45	32.39	16.33	30.54	32.74	29.63	20.61
Merged-chr10-88383625-3	chr10	88383122	88384122	+	982.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	RMER10A|LTR|ERVL	4210.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	3.43	3.69	12.95	7.42	3.73	3.22	11.62	6.19	6.25
Merged-chr11-120630159-3	chr11	120629654	120630654	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	3393.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	263.14	233.62	152.62	243.57	200.6	198.54	227.08	319.69	146.76
Merged-chr15-37305543-3	chr15	37305050	37306050	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026496, intron 7 of 15)	intron (NM_026496, intron 7 of 15)	-72391.0	NR_155442	105245924.0	Mm.391911	NR_155441	ENSMUSG00000089804	Gm16136	-	predicted gene 16136	ncRNA	9.72	3.23	0.92	6.75	4.2	4.82	4.22	4.86	5.62
Merged-chr7-43985828-3	chr7	43985344	43986344	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9783.0	NM_010116	13648.0	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	28.6	23.04	7.4	24.29	12.13	6.43	3.17	3.98	1.25
Merged-chr4-88515835-3	chr4	88515352	88516352	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6942.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	17.16	19.35	9.25	16.87	23.33	12.86	39.08	24.76	21.86
Merged-chr2-59616116-3	chr2	59615631	59616631	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4089.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	68.07	90.31	71.22	101.88	91.9	71.54	89.78	100.37	34.97
Merged-chr1-148904284-3	chr1	148903780	148904780	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1018159.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	59.49	77.41	15.72	80.29	77.44	64.3	76.05	68.98	27.48
Merged-chr19-11604821-3	chr19	11604318	11605318	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026835)	promoter-TSS (NM_026835)	-14.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	66.93	69.58	60.12	55.33	41.99	61.09	48.58	60.58	49.96
Merged-chr9-120011719-3	chr9	120011213	120012213	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	11885.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	96.68	70.04	57.35	73.54	59.71	85.2	40.14	20.78	21.86
Merged-chr4-3712655-3	chr4	3712148	3713148	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-2316.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	172.76	152.98	108.22	133.59	95.17	118.16	125.69	141.94	88.68
Merged-chr11-82952104-3	chr11	82951644	82952644	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183201)	promoter-TSS (NM_183201)	42.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	287.17	245.14	167.42	298.23	308.83	254.0	289.39	387.78	145.51
Merged-chr1-144299345-3	chr1	144298835	144299835	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67B|LTR|ERV1	-50231.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	40.62	46.54	42.55	46.56	50.85	41.8	45.42	40.24	43.72
Merged-chr2-62643527-3	chr2	62643040	62644040	+	982.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	2715.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	26.89	32.72	31.45	37.78	44.32	23.31	46.47	45.1	31.23
Merged-chr6-51551707-3	chr6	51551184	51552184	+	982.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	6391.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	107.55	114.27	108.22	109.98	71.84	102.88	127.8	108.33	66.82
Merged-chr14-14684936-3	chr14	14684437	14685437	+	982.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18088.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	14.87	29.49	16.65	15.52	20.53	11.25	16.9	9.73	22.48
Merged-chr8-106577373-3	chr8	106576885	106577885	+	982.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9758.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	18.88	15.21	17.57	14.84	11.66	12.86	17.96	16.8	18.11
Merged-chr12-111944611-2	chr12	111944112	111945112	+	982.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029464)	promoter-TSS (NR_029464)	-130.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	10.87	7.37	3.7	37.11	27.52	42.6	51.75	39.35	42.47
Merged-chr2-71382124-2	chr2	71381621	71382621	+	982.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7139.0	NM_026115	107435.0	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	22.88	21.66	12.02	15.52	13.06	11.25	23.24	25.65	13.74
Merged-chr5-123436330-3	chr5	123435802	123436802	+	982.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	41504.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	40.04	34.1	16.65	21.59	18.19	16.08	31.69	19.01	17.49
Merged-chr7-101357041-3	chr7	101356527	101357527	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	8958.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	6.29	5.99	7.4	14.17	7.93	10.45	9.51	3.98	7.49
Merged-chr8-34816320-3	chr8	34815817	34816817	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	8707.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.43	2.3	0.0	4.72	1.87	6.43	4.22	1.77	6.87
Merged-chr16-38701988-3	chr16	38701474	38702474	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11061.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	19.45	7.37	5.55	18.89	10.73	17.68	20.07	16.8	9.37
Merged-chr1-59316847-3	chr1	59316325	59317325	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	59919.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	21.74	21.2	12.95	23.62	20.99	21.7	10.56	13.27	14.36
Merged-chr13-83066481-3	chr13	83065945	83066945	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-368112.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	65.79	58.98	27.75	101.21	86.3	53.05	103.51	87.99	47.46
Merged-chr13-91224662-3	chr13	91224189	91225189	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025770)	promoter-TSS (NM_025770)	-702.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	106.4	171.41	107.29	169.35	202.46	91.63	176.38	246.29	62.45
Merged-chr17-25828920-3	chr17	25828414	25829414	+	982.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028101)	promoter-TSS (NM_028101)	-129.0	NM_028101	72106.0	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	28.03	28.11	17.57	32.39	12.6	23.31	26.4	22.99	34.97
Merged-chr5-3359282-3	chr5	3358793	3359793	+	982.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	15400.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	85.24	134.09	51.8	114.7	72.78	68.32	90.83	120.27	81.19
Merged-chr10-93309795-3	chr10	93309300	93310300	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	1359.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	53.77	56.22	59.2	66.8	41.05	74.75	22.18	15.92	7.49
Merged-chr1-189922379-3	chr1	189921914	189922914	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026796)	promoter-TSS (NM_026796)	-123.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	13.16	5.53	5.55	14.17	9.33	6.43	6.34	2.65	5.0
Merged-chr5-105594745-3	chr5	105594229	105595229	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75258.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	148.73	136.85	90.65	165.98	120.36	73.95	142.59	152.99	64.95
Merged-chr5-66038418-3	chr5	66037929	66038929	+	982.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 3 of 6)	intron (NM_139065, intron 3 of 6)	-34144.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	9.15	8.29	3.7	11.47	6.53	6.43	8.45	12.38	11.24
Merged-chr9-62343262-5	chr9	62342757	62343757	+	982.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	1914.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	243.12	263.57	237.71	210.51	174.94	245.16	243.98	230.37	184.24
Merged-chr19-33007793-1	chr19	33007293	33008293	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149319.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	2.29	2.3	7.4	6.75	3.73	8.04	2.11	3.98	5.0
Merged-chr12-73324508-1	chr12	73324008	73325008	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	37660.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	13.73	10.6	16.65	10.8	15.39	20.09	14.79	7.52	14.99
Merged-chr2-112367974-3	chr2	112367466	112368466	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026519)	promoter-TSS (NM_026519)	61.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	76.66	83.86	79.55	99.86	91.9	122.18	84.49	96.39	74.94
Merged-chr4-117136236-3	chr4	117135796	117136796	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2333.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	57.78	60.36	65.67	144.39	98.43	122.98	99.28	91.53	53.71
Merged-chr12-69892659-1	chr12	69892159	69893159	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178628)	promoter-TSS (NM_178628)	-446.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	97.82	70.5	66.6	96.48	74.17	60.28	71.82	43.33	49.96
Merged-chr17-8988344-3	chr17	8987834	8988834	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347544)	promoter-TSS (NM_001347544)	1.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	21.17	18.43	7.4	27.66	26.59	11.25	20.07	18.57	9.99
Merged-chr2-11187388-3	chr2	11186887	11187887	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	15005.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	16.02	26.26	44.4	12.82	12.6	29.74	38.02	27.41	24.98
Merged-chr8-117498423-3	chr8	117497972	117498972	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	CpG	197.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	112.12	146.53	134.12	126.17	111.5	102.08	127.8	126.46	85.56
Merged-chr5-108449243-2	chr5	108448773	108449773	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172883)	promoter-TSS (NM_172883)	-173.0	NM_172883	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	25.74	29.49	37.0	34.41	52.25	54.66	49.64	42.45	22.48
Merged-chr8-60978713-3	chr8	60978210	60979210	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173873, intron 1 of 12)	intron (NM_173873, intron 1 of 12)	4601.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	36.04	39.63	24.05	43.18	33.12	23.31	26.4	32.72	24.36
Merged-chr9-120043335-3	chr9	120042823	120043823	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19725.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	12.59	7.83	11.1	31.71	7.93	28.13	6.34	7.52	5.0
Merged-chr16-25846786-2	chr16	25846278	25847278	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127262, intron 2 of 10)	intron (NM_001127262, intron 2 of 10)	44862.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	1.72	5.07	1.85	2.02	1.87	0.0	5.28	0.0	3.75
Merged-chr6-92092809-1	chr6	92092309	92093309	+	982.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347342, exon 1 of 15)	5' UTR (NM_001347342, exon 1 of 15)	376.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	60.64	81.56	78.62	79.62	77.91	91.63	107.73	102.14	93.05
Merged-chr9-61330936-3	chr9	61330443	61331443	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37134.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	9.15	4.61	7.4	5.4	5.13	1.61	6.34	8.4	4.37
Merged-chr12-54985787-3	chr12	54985284	54986284	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013815, exon 2 of 27)	5' UTR (NM_013815, exon 2 of 27)	552.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	282.02	251.59	274.71	237.5	170.74	198.54	248.2	164.93	179.86
Merged-chr16-32115389-3	chr16	32114888	32115888	+	982.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15586.0	NM_025892	66994.0	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	45.19	54.83	39.77	33.06	34.52	29.74	46.47	31.39	27.48
Merged-chr8-82863611-5	chr8	82863098	82864098	+	981.9714359999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177378, exon 1 of 7)	5' UTR (NM_177378, exon 1 of 7)	242.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	71.51	35.94	31.45	107.28	66.24	91.63	77.1	51.73	39.97
Merged-chr2-3726912-3	chr2	3726383	3727383	+	981.9523929999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	13425.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	128.14	84.32	83.25	153.84	100.3	90.02	99.28	84.01	54.33
Merged-chr1-37300868-3	chr1	37300373	37301373	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	1035.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	31.46	47.92	20.35	51.28	71.38	50.64	69.71	52.18	24.36
Merged-chr13-23751110-3	chr13	23750613	23751613	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175660)	promoter-TSS (NM_175660)	25.0	NM_175660	319172.0	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	119.56	111.51	70.3	103.23	138.55	110.92	129.91	197.21	105.55
Merged-chrX-134606412-3	chrX	134605931	134606931	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001313717, exon 3 of 3)	3' UTR (NM_001313717, exon 3 of 3)	5252.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	27.46	29.95	13.87	15.52	21.46	20.9	22.18	25.65	12.49
Merged-chr17-6106890-3	chr17	6106381	6107381	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001103181)	promoter-TSS (NM_001103181)	51.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	193.93	141.46	110.07	174.75	107.3	130.21	178.5	91.53	99.92
Merged-chr2-150927289-3	chr2	150926783	150927783	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 5 of 6)	intron (NM_027014, intron 5 of 6)	17689.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	59.49	66.81	49.95	58.7	50.38	63.5	84.49	74.28	41.84
Merged-chr5-91302326-3	chr5	91301809	91302809	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-19233.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	2.29	1.38	5.55	16.19	5.13	3.22	4.22	1.77	3.75
Merged-chr11-70655962-3	chr11	70655475	70656475	+	981.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-2177	-1201.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	221.96	188.46	221.99	250.32	200.6	235.51	251.37	280.33	173.62
Merged-chr6-129238037-3	chr6	129237520	129238520	+	981.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	25.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	154.45	130.4	140.59	189.6	139.49	104.49	220.74	172.0	100.55
Merged-chr18-8638170-3	chr18	8637653	8638653	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-574703.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	11.44	21.2	18.5	3.37	9.8	3.22	29.57	15.48	11.24
Merged-chr4-131916604-3	chr4	131916095	131917095	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	3434.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	8.01	2.3	0.0	9.45	1.87	8.04	6.34	2.21	1.25
Merged-chr10-85194699-3	chr10	85194208	85195208	+	981.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-9654.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	4.58	4.15	5.55	4.05	3.27	4.02	2.11	3.1	3.75
Merged-chr2-24962436-3	chr2	24961925	24962925	+	981.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355558)	promoter-TSS (NM_001355558)	3.0	NM_026044	67228.0	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	15.45	13.36	9.25	14.17	14.46	17.68	10.56	15.48	8.74
Merged-chr8-35068459-2	chr8	35067959	35068959	+	981.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-102769.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	6.86	1.38	3.7	2.7	1.4	1.61	1.06	0.44	3.75
Merged-chr4-106687057-1	chr4	106686557	106687557	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001126487, intron 21 of 23)	intron (NM_001126487, intron 21 of 23)	-8113.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	10.87	10.6	9.25	2.02	4.2	2.41	15.84	18.13	11.24
Merged-chr7-19474233-3	chr7	19473716	19474716	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15722.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	63.5	45.62	39.77	74.22	46.65	61.09	113.01	123.81	50.59
Merged-chr1-171466252-3	chr1	171465772	171466772	+	981.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR73|LTR|ERV1	28711.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	36.61	32.72	17.57	32.39	19.59	29.74	47.53	34.49	36.85
Merged-chr6-8427841-2	chr6	8427267	8428267	+	981.785706	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001302353, exon 5 of 5)	3' UTR (NM_001302353, exon 5 of 5)	81394.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.58	2.3	4.62	53.3	31.26	25.72	43.3	39.8	18.74
Merged-chr6-131293249-3	chr6	131292724	131293724	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025564)	promoter-TSS (NM_025564)	20.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	135.0	165.88	81.4	124.82	133.89	105.3	205.96	161.83	89.31
Merged-chr11-106562963-3	chr11	106562456	106563456	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	49974.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	36.61	40.55	59.2	65.45	64.38	87.61	55.98	52.18	46.84
Merged-chr19-40666010-3	chr19	40665519	40666519	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	6249.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	62.35	49.76	34.22	81.64	44.78	49.83	71.82	53.5	50.59
Merged-chr16-4420023-3	chr16	4419501	4420501	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291910, exon 1 of 12)	5' UTR (NM_001291910, exon 1 of 12)	497.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	44.05	35.94	65.67	72.87	56.45	69.93	57.03	41.56	15.61
Merged-chr18-30088617-3	chr18	30088117	30089117	+	981.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184248.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	22.88	26.73	11.1	37.11	33.59	38.58	5.28	3.98	1.25
Merged-chrX-99382468-2	chrX	99381967	99382967	+	981.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61330.0	NR_033544	100038584.0	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	-	predicted gene 14812	ncRNA	16.02	14.75	7.4	15.52	11.2	14.47	7.39	3.1	5.62
Merged-chr11-82270366-2	chr11	82269867	82270867	+	981.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90555.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	6.86	7.37	9.25	4.72	4.67	4.82	3.17	4.86	6.25
Merged-chr10-127512999-3	chr10	127512493	127513493	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1946.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	8.58	5.07	9.25	6.07	2.8	4.82	5.28	4.42	1.25
Merged-chr9-32032256-3	chr9	32031748	32032748	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-83888.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	6.29	2.3	6.47	5.4	2.33	1.61	3.17	1.77	1.25
Merged-chr7-49007075-3	chr7	49006583	49007583	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	48010.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	18.88	9.68	9.25	37.78	19.59	16.08	14.79	17.69	8.74
Merged-chr8-125461761-3	chr8	125461278	125462278	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	31055.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	12.59	15.67	19.42	18.89	16.79	6.43	69.71	76.94	58.71
Merged-chr6-131278333-3	chr6	131277832	131278832	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	14912.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	36.04	72.34	38.85	31.71	36.85	39.39	48.58	67.65	31.85
Merged-chr1-149961674-3	chr1	149961177	149962177	+	981.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008869)	promoter-TSS (NM_008869)	-387.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	93.24	87.09	62.9	97.16	97.5	100.47	102.45	110.1	75.57
Merged-chr11-3188080-6	chr11	3187516	3188516	+	981.680542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 2 of 32)	B3|SINE|B2	5447.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	47.48	66.81	109.14	74.89	87.7	91.63	86.61	62.79	117.41
Merged-chr3-104865119-3	chr3	104864626	104865626	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355044)	promoter-TSS (NM_001355044)	620.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	257.42	223.02	224.76	205.79	232.79	277.31	214.41	218.87	140.52
Merged-chr11-103262615-3	chr11	103262094	103263094	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	199.65	184.77	144.29	161.93	131.56	134.23	127.8	190.13	109.92
Merged-chr3-65484602-3	chr3	65484095	65485095	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43852.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	5.72	2.76	1.85	2.7	3.27	1.61	0.0	0.44	2.5
Merged-chr1-178641992-1	chr1	178641492	178642492	+	981.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	112867.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	12.59	15.21	25.9	1.35	1.87	6.43	1.06	1.77	10.62
Merged-chr12-111930546-2	chr12	111930066	111931066	+	981.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13916.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	3.43	5.07	15.72	33.06	18.19	44.21	27.46	29.63	36.22
Merged-chr19-34471953-3	chr19	34471430	34472430	+	981.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3205.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	7.44	4.15	0.0	6.75	10.73	4.82	9.51	5.75	1.25
Merged-chr12-108919022-3	chr12	108918536	108919536	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	24764.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	12.01	10.6	2.77	48.58	40.12	28.94	15.84	19.46	28.1
Merged-chr6-51173161-3	chr6	51172640	51173640	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96770.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	8.01	19.81	13.87	5.4	2.8	4.82	52.81	56.16	39.35
Merged-chr1-92648957-3	chr1	92648456	92649456	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153114)	promoter-TSS (NM_153114)	-115.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	17.73	11.52	8.32	19.57	11.66	13.66	11.62	13.71	7.49
Merged-chr2-17932052-3	chr2	17931552	17932552	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64906.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	12.59	10.6	14.8	9.45	4.67	3.22	5.28	3.98	8.74
Merged-chr10-37141785-3	chr10	37141296	37142296	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-2870.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	42.33	42.85	37.0	46.56	39.19	35.37	32.74	35.37	37.47
Merged-chr12-81751327-3	chr12	81750824	81751824	+	981.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	ID_B1|SINE|B4	29846.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	50.34	51.61	26.82	58.03	35.45	26.53	68.65	62.79	29.98
Merged-chr5-32139710-5	chr5	32139157	32140157	+	981.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	3185.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	171.04	167.73	156.32	143.71	110.1	124.59	185.89	168.91	148.01
Merged-chr18-75901599-2	chr18	75901102	75902102	+	981.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	81424.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.43	2.3	1.85	16.19	13.06	6.43	73.93	59.25	24.36
Merged-chr10-75060458-3	chr10	75059963	75060963	+	981.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081412)	promoter-TSS (NM_001081412)	-433.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	4.0	3.69	5.55	12.14	5.13	3.22	4.22	2.65	2.5
Merged-chr4-109116683-3	chr4	109116195	109117195	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	intron (NM_001355190, intron 2 of 21)	1341.0	NM_173350	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	34.32	58.98	36.07	51.28	43.39	45.82	62.31	54.39	38.1
Merged-chr17-30570342-3	chr17	30569838	30570838	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	MTD|LTR|ERVL-MaLR	5949.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	40.04	40.55	55.5	16.87	7.93	12.06	21.12	22.55	20.61
Merged-chr12-82446740-3	chr12	82446224	82447224	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 21 of 23)	ORR1A4|LTR|ERVL-MaLR	135375.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	45.19	29.49	21.27	22.27	16.33	16.08	29.57	30.95	9.37
Merged-chr15-75903464-3	chr15	75902951	75903951	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029663, exon 3 of 10)	exon (NM_029663, exon 3 of 10)	5893.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	13.16	16.59	9.25	20.92	13.53	9.65	21.12	8.4	11.24
Merged-chr1-74308822-3	chr1	74308335	74309335	+	981.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	RMER2|LTR|ERV1	-4499.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	30.32	16.13	4.62	30.36	17.73	16.88	25.35	20.34	12.49
Merged-chr16-36669829-4	chr16	36669345	36670345	+	981.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3768.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	68.07	79.25	57.35	86.36	62.05	46.62	113.01	113.64	53.71
Merged-chr11-77785903-3	chr11	77785383	77786383	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	8648.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	144.16	98.15	116.54	269.89	246.32	213.81	115.12	100.81	53.71
Merged-chr12-4198918-3	chr12	4198413	4199413	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 8 of 21)	intron (NM_001159537, intron 8 of 21)	35052.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	52.06	82.94	75.85	124.82	135.29	106.9	60.2	57.48	48.09
Merged-chr17-84850634-3	chr17	84850118	84851118	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-59832.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	8.01	6.45	3.7	10.8	7.46	3.22	3.17	1.33	5.0
Merged-chr13-105055618-3	chr13	105055100	105056100	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-670.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	20.59	10.6	3.7	23.62	4.2	4.02	6.34	5.75	2.5
Merged-chr3-97991623-3	chr3	97991112	97992112	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21926.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	24.6	18.89	34.22	34.41	26.12	54.66	29.57	21.22	20.61
Merged-chr6-137575441-1	chr6	137574941	137575941	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-4432.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	52.06	23.5	9.25	4.05	3.27	6.43	4.22	2.65	2.5
Merged-chr3-51882108-3	chr3	51881612	51882612	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	220933.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	12.01	5.99	7.4	3.37	3.73	3.22	4.22	7.96	2.5
Merged-chr4-42879829-2	chr4	42879332	42880332	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-5598.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	39.47	50.23	58.27	36.43	26.59	57.07	15.84	15.48	18.74
Merged-chrY-90808845-1	chrY	90808345	90809345	+	981.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	23403.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	1.72	4.15	3.7	0.67	7.93	0.0	16.9	11.5	28.1
Merged-chr10-125387766-3	chr10	125387263	125388263	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58800.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	84.09	87.09	61.05	112.68	71.84	86.01	74.99	85.34	55.58
Merged-chr11-3183447-2	chr11	3182927	3183927	+	981.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	B1_Mus2|SINE|Alu	10036.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	40.62	55.75	49.02	60.72	72.78	75.56	1.06	4.42	117.41
Merged-chr10-8007445-3	chr10	8006949	8007949	+	981.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51326.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	21.17	23.04	4.62	26.99	20.06	10.45	16.9	12.82	9.37
Merged-chr10-63177448-3	chr10	63176930	63177930	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	26522.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	76.08	82.94	73.07	126.17	70.91	99.67	128.85	88.43	73.07
Merged-chr3-116126727-3	chr3	116126228	116127228	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	2960.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	71.51	52.99	57.35	83.66	65.78	85.2	116.18	143.7	52.46
Merged-chr17-10841033-3	chr17	10840529	10841529	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027032)	promoter-TSS (NM_027032)	670.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	156.74	149.75	84.17	124.15	109.16	91.63	89.78	110.54	74.32
Merged-chr9-107713580-3	chr9	107713068	107714068	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3093.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	16.02	11.52	14.8	21.59	11.66	10.45	16.9	8.84	3.75
Merged-chr19-46609843-3	chr19	46609354	46610354	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	10748.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	34.32	21.66	24.97	31.04	23.79	35.37	175.33	122.48	57.46
Merged-chr1-107402306-3	chr1	107401790	107402790	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20399.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	18.31	21.2	20.35	8.77	17.26	23.31	26.4	22.11	20.61
Merged-chr3-84259759-3	chr3	84259214	84260214	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271727)	promoter-TSS (NM_001271727)	65.0	NM_001271727	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	13.73	1.84	4.62	29.01	20.99	16.08	4.22	6.19	8.74
Merged-chr11-69041783-3	chr11	69041293	69042293	+	981.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3844.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	46.34	58.98	14.8	47.9	43.85	37.78	46.47	74.28	44.97
Merged-chr12-32292166-3	chr12	32291663	32292663	+	981.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83514.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	117.27	160.35	91.57	113.35	160.95	135.84	173.21	187.48	111.79
Merged-chr11-63052986-3	chr11	63052484	63053484	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8675.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	29.75	23.96	11.1	23.62	20.06	18.49	57.03	49.08	16.86
Merged-chr7-25813818-3	chr7	25813293	25814293	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028775, intron 2 of 8)	intron (NM_028775, intron 2 of 8)	2737.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	4.0	4.61	0.0	5.4	2.8	3.22	10.56	2.21	6.25
Merged-chr12-99264549-3	chr12	99264041	99265041	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101733.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	12.01	16.13	12.02	14.84	15.86	11.25	11.62	10.17	8.12
Merged-chr12-111166449-3	chr12	111165958	111166958	+	981.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286122)	promoter-TSS (NM_001286122)	88.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	179.05	138.24	75.85	181.5	117.56	110.12	154.2	118.06	63.08
Merged-chr17-35439533-2	chr17	35439041	35440041	+	981.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001201460, exon 2 of 7)	exon (NM_001201460, exon 2 of 7)	374.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	119.56	60.36	16.65	66.12	19.59	8.84	163.71	125.13	33.72
Merged-chr9-80081159-3	chr9	80080654	80081654	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	ORR1E|LTR|ERVL-MaLR	14251.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	14.87	8.29	13.87	14.17	4.67	9.65	6.34	15.92	8.12
Merged-chr3-96251944-3	chr3	96251452	96252452	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5252.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	81.8	101.83	49.95	95.81	96.1	82.79	146.81	145.92	74.94
Merged-chr11-68440249-3	chr11	68439733	68440733	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	8108.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	18.88	9.68	11.1	14.17	9.33	16.08	11.62	4.86	13.12
Merged-chr11-83631283-3	chr11	83630774	83631774	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18104.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	60.64	50.69	21.27	111.33	59.25	95.65	65.48	50.85	23.11
Merged-chr13-85288494-3	chr13	85287996	85288996	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145452, exon 1 of 25)	exon (NM_145452, exon 1 of 25)	990.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	157.31	194.91	192.39	149.79	149.75	185.68	171.1	151.66	147.39
Merged-chr13-3525921-3	chr13	3525384	3526384	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12191.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	69.22	80.64	44.4	57.35	40.59	40.19	45.42	39.35	37.47
Merged-chr3-41743983-3	chr3	41743495	41744495	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	1377.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	65.79	102.75	61.05	64.1	68.11	46.62	103.51	129.55	52.46
Merged-chr15-98510661-3	chr15	98510155	98511155	+	981.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9179.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	165.32	149.75	135.04	139.67	114.76	122.98	119.35	180.85	69.32
Merged-chr12-75687665-3	chr12	75687193	75688193	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-18156.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	49.77	56.68	66.6	47.9	52.72	72.34	41.19	47.31	28.73
Merged-chr7-28584105-3	chr7	28583586	28584586	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 1 of 9)	L2b|LINE|L2	14098.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	9.15	11.52	17.57	16.19	9.8	12.86	8.45	3.54	18.74
Merged-chr6-92183963-3	chr6	92183450	92184450	+	981.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025578)	promoter-TSS (NM_025578)	73.0	NM_025578	64658.0	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	47.48	42.39	27.75	43.86	37.79	19.29	59.15	26.97	11.87
Merged-chr7-126643408-2	chr7	126642915	126643915	+	981.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5894.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	11.44	6.45	0.0	17.54	6.53	3.22	11.62	4.86	4.37
Merged-chrX-155702190-2	chrX	155701692	155702692	+	981.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger20a|DNA|TcMar-Tigger	-78865.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	6.86	3.69	7.4	1.35	2.8	10.45	1.06	0.0	2.5
Merged-chr8-115632378-3	chr8	115631873	115632873	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74521.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	67.5	82.48	30.52	67.47	50.85	43.4	45.42	38.03	43.72
Merged-chr8-82843893-3	chr8	82843386	82844386	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19470.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	16.59	8.75	3.7	7.42	8.4	3.22	7.39	2.65	2.5
Merged-chr12-72761785-3	chr12	72761270	72762270	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008910, intron 1 of 5)	CpG	559.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	260.28	155.28	182.22	225.36	134.82	172.81	240.81	120.27	136.77
Merged-chr11-75268042-3	chr11	75267534	75268534	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177708)	TTS (NM_177708)	74041.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	24.03	17.97	12.02	35.09	52.25	64.3	32.74	31.84	21.23
Merged-chr8-85083664-3	chr8	85083170	85084170	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010764, intron 1 of 23)	intron (NM_010764, intron 1 of 23)	401.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	255.71	310.11	175.74	245.6	192.67	152.72	217.57	328.53	125.53
Merged-chr4-115057009-3	chr4	115056520	115057520	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287388)	promoter-TSS (NM_001287388)	594.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	5.72	2.76	0.92	4.05	2.8	6.43	4.22	2.21	1.25
Merged-chr8-106563770-3	chr8	106563281	106564281	+	981.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23362.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	42.9	32.25	28.67	41.16	27.06	31.35	47.53	31.84	36.22
Merged-chr9-49427585-2	chr9	49427082	49428082	+	981.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172922)	promoter-TSS (NM_172922)	-561.0	NM_172922	244859.0	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	13.16	11.06	7.4	32.39	19.13	16.08	1.06	0.88	6.25
Merged-chr10-120815449-3	chr10	120814931	120815931	+	981.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-42198.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	10.87	4.61	3.7	8.1	2.8	6.43	2.11	0.44	1.25
Merged-chr12-3391087-3	chr12	3390587	3391587	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	25955.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	52.06	70.5	12.95	74.22	75.11	40.99	151.03	149.89	44.97
Merged-chr6-97442821-3	chr6	97442318	97443318	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	B1_Mur1|SINE|Alu	16468.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	139.01	175.1	110.99	178.13	127.82	131.82	175.33	189.69	98.68
Merged-chr8-14859669-3	chr8	14859249	14860249	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28787.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	22.31	23.5	16.65	21.59	16.33	24.92	35.91	31.84	24.98
Merged-chr11-89023623-1	chr11	89023123	89024123	+	981.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24220.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	193.35	191.69	150.77	182.85	146.48	161.56	257.71	284.31	143.64
Merged-chr7-88225968-3	chr7	88225459	88226459	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52126.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	62.93	78.33	56.42	51.95	50.85	65.91	89.78	100.81	74.94
Merged-chr4-9133850-3	chr4	9133347	9134347	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-135446.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.01	4.61	0.0	7.42	4.2	1.61	8.45	3.98	6.25
Merged-chr5-32194475-3	chr5	32193966	32194966	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-38242.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	26.31	23.5	17.57	20.24	31.72	39.39	32.74	42.01	24.98
Merged-chr10-80223336-3	chr10	80222831	80223831	+	981.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	RLTR13C2|LTR|ERVK	-3267.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	2.86	0.92	9.25	9.45	2.33	3.22	0.0	2.65	5.0
Merged-chr1-151025339-3	chr1	151024838	151025838	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-31903.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	47.48	37.32	26.82	29.69	34.52	35.37	39.08	29.18	27.48
Merged-chr13-9763210-3	chr13	9762714	9763714	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	596.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	88.1	93.54	49.95	57.35	49.45	37.78	114.07	90.2	33.1
Merged-chr7-73606962-3	chr7	73606461	73607461	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48566.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	58.92	56.68	40.7	57.35	42.45	36.17	70.76	66.77	29.35
Merged-chr1-91027115-3	chr1	91026631	91027631	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	-26313.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	50.34	47.46	22.2	33.74	34.99	34.56	50.7	59.25	37.47
Merged-chr12-69331365-3	chr12	69330853	69331853	+	981.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 17 of 32)	B3|SINE|B2	25823.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	20.59	40.09	29.6	30.36	20.06	38.58	27.46	45.54	34.35
Merged-chr2-165934012-2	chr2	165933494	165934494	+	981.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49156.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	74.37	64.05	41.62	85.69	76.51	79.58	3.17	3.1	6.25
Merged-chr11-44382308-3	chr11	44381800	44382800	+	981.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17763.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	25.74	28.11	23.12	31.71	21.46	16.08	35.91	22.11	11.24
Merged-chr4-129063191-4	chr4	129062651	129063651	+	981.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	PB1D7|SINE|Alu	4880.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	60.64	62.67	35.15	49.25	36.39	49.83	39.08	37.58	37.47
Merged-chr16-91043995-3	chr16	91043467	91044467	+	981.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 1 of 17)	CpG	412.0	NM_026110	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	177.91	133.63	117.47	192.97	149.28	131.82	199.62	139.28	97.43
Merged-chr2-120153719-3	chr2	120153214	120154214	+	981.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 1 of 5)	intron (NM_133838, intron 1 of 5)	861.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	263.14	270.94	150.77	264.49	264.04	155.13	182.72	232.58	94.93
Merged-chr9-13662159-6	chr9	13661616	13662616	+	981.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173776)	promoter-TSS (NM_173776)	-344.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	42.9	62.67	42.55	53.3	44.32	57.07	59.15	57.92	51.21
Merged-chr10-17691883-1	chr10	17691383	17692383	+	981.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-31345.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	11.44	13.36	5.55	14.17	8.4	12.06	11.62	10.61	7.49
Merged-chr4-40847459-3	chr4	40846990	40847990	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	2648.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	129.86	93.08	68.45	153.16	96.57	53.85	176.38	156.97	57.46
Merged-chr11-31877762-1	chr11	31877262	31878262	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026252, intron 1 of 9)	intron (NM_026252, intron 1 of 9)	6822.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	4.58	11.06	2.77	6.07	6.06	9.65	8.45	2.65	5.0
Merged-chr2-93471403-3	chr2	93470918	93471918	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8468.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	5.15	1.84	0.0	4.05	0.0	3.22	4.22	2.21	5.0
Merged-chr3-104968152-3	chr3	104967662	104968662	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6453.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	7.44	3.69	9.25	8.1	2.33	9.65	5.28	7.96	2.5
Merged-chr10-59324014-1	chr10	59323514	59324514	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	718.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	125.28	123.95	134.12	109.98	100.3	103.69	158.43	122.48	145.51
Merged-chr7-24395237-1	chr7	24394737	24395737	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4391.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.86	10.6	7.4	6.07	2.8	24.92	32.74	27.41	37.47
Merged-chr3-8964158-3	chr3	8963640	8964640	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	6.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	21.74	19.35	22.2	25.64	18.19	12.86	31.69	22.11	14.99
Merged-chr2-49733619-1	chr2	49733119	49734119	+	981.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-54067.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	21.74	26.73	31.45	9.45	19.13	20.09	23.24	30.95	14.36
Merged-chr17-27825129-3	chr17	27824609	27825609	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4567.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	138.44	122.57	111.92	109.98	96.1	117.35	121.46	144.59	79.94
Merged-chr13-59001393-1	chr13	59000893	59001893	+	981.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	193696.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	13.73	23.96	22.2	12.82	19.13	20.09	43.3	49.52	33.72
Merged-chr17-34278773-1	chr17	34278273	34279273	+	981.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	8998.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	12.01	5.53	5.55	2.02	3.27	1.61	6.34	7.52	1.25
Merged-chr7-4996133-3	chr7	4995652	4996652	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026741)	promoter-TSS (NM_026741)	-51.0	NM_026741	68490.0	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	20.59	11.06	4.62	10.8	6.06	11.25	13.73	4.86	11.87
Merged-chr4-141213991-3	chr4	141213515	141214515	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081174)	promoter-TSS (NM_001081174)	59.0	NM_001081174	76166.0	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723|b2b2804Clo|b2b2827Clo	REM2 and RAB-like small GTPase 1	protein-coding	8.58	7.83	2.77	8.77	8.4	4.82	21.12	20.34	17.49
Merged-chr2-181291162-3	chr2	181290622	181291622	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3156.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	31.46	34.1	31.45	35.09	24.26	36.17	71.82	61.46	33.72
Merged-chr13-23697619-3	chr13	23697131	23698131	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178208)	TTS (NM_178208)	827.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	101.25	141.92	80.47	103.91	96.1	86.01	78.16	121.6	79.32
Merged-chr7-126704769-3	chr7	126704281	126705281	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009898)	promoter-TSS (NM_009898)	35.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	39.47	22.58	31.45	18.22	23.33	36.17	30.63	26.97	16.24
Merged-chr4-149790028-3	chr4	149789521	149790521	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15754.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	150.45	104.14	95.27	159.91	99.83	124.59	118.29	91.97	101.17
Merged-chr8-22411342-3	chr8	22410856	22411856	+	980.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020560)	promoter-TSS (NM_020560)	16.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	32.04	28.57	49.02	26.99	33.59	36.97	42.25	22.55	18.74
Merged-chr3-27439348-2	chr3	27438857	27439857	+	980.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68006.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	16.02	14.28	12.95	41.83	37.79	39.39	23.24	18.13	15.61
Merged-chr14-21832205-3	chr14	21831672	21832672	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011695, intron 2 of 9)	intron (NM_011695, intron 2 of 9)	611.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	117.27	139.62	188.69	136.97	137.15	154.33	198.56	172.0	83.69
Merged-chr15-41861179-3	chr15	41860692	41861692	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_130885)	TTS (NM_130885)	8528.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	6.86	12.9	7.4	19.57	7.93	16.88	7.39	8.84	3.75
Merged-chr1-176827672-3	chr1	176827163	176828163	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	8470.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	116.7	140.54	110.07	175.43	142.29	132.63	157.37	256.9	118.04
Merged-chr19-55312020-3	chr19	55311516	55312516	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025883, intron 3 of 10)	intron (NM_025883, intron 3 of 10)	4020.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	18.31	25.8	25.9	22.27	17.73	19.29	64.43	52.18	42.47
Merged-chr1-87638394-3	chr1	87637896	87638896	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	18084.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	94.96	111.97	83.25	93.79	80.71	87.61	97.17	106.12	70.57
Merged-chr17-26537770-3	chr17	26537256	26538256	+	980.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23756.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	319.78	264.03	99.89	307.67	229.52	198.54	227.08	268.84	139.27
Merged-chr7-92985084-5	chr7	92984568	92985568	+	980.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94811.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	60.07	113.81	34.22	84.34	81.17	60.28	86.61	84.01	64.95
Merged-chr18-30583630-2	chr18	30583132	30584132	+	980.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	310767.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.57	4.61	2.77	8.1	3.73	1.61	8.45	11.94	5.62
Merged-chr3-60537265-3	chr3	60536756	60537756	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	36077.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	112.12	115.66	52.72	100.53	71.84	70.73	87.66	105.68	44.97
Merged-chr18-50058718-3	chr18	50058211	50059211	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-5049.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	20.02	5.53	13.87	12.82	8.86	20.09	19.01	12.82	10.62
Merged-chr5-107754908-3	chr5	107754396	107755396	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-29091.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	5.72	6.45	3.7	4.05	6.53	1.61	10.56	4.86	6.87
Merged-chr1-195032400-3	chr1	195031881	195032881	+	980.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015566, intron 7 of 7)	intron (NR_015566, intron 7 of 7)	-4659.0	NR_029809	723963.0		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	12.01	9.22	17.57	21.59	7.0	13.66	6.34	8.84	11.24
Merged-chr6-87590738-3	chr6	87590235	87591235	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021381)	promoter-TSS (NM_021381)	8.0	NM_001355655	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	9.72	4.61	6.47	8.1	6.06	4.82	12.67	8.84	8.12
Merged-chr7-45920711-3	chr7	45920235	45921235	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001146346, exon 1 of 5)	5' UTR (NM_001146346, exon 1 of 5)	114.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	52.06	73.26	74.92	56.68	41.99	69.93	70.76	51.73	103.05
Merged-chr2-31172227-3	chr2	31171732	31172732	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 5 of 17)	intron (NM_178760, intron 5 of 17)	19916.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	34.32	35.94	71.22	45.21	25.66	71.54	52.81	46.87	48.09
Merged-chr1-65180008-3	chr1	65179526	65180526	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-884.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	32.04	40.09	16.65	29.01	31.72	20.9	47.53	68.09	23.11
Merged-chr13-20494217-3	chr13	20493719	20494719	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	21229.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	24.6	18.43	7.4	11.47	12.13	17.68	14.79	10.61	18.11
Merged-chr12-69507573-3	chr12	69507071	69508071	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-32021.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	12.59	9.22	16.65	15.52	4.2	0.0	33.8	32.72	9.99
Merged-chrX-155218462-3	chrX	155217974	155218974	+	980.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2025.0	NM_001291865	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	30.89	23.5	23.12	45.21	35.92	24.11	50.7	49.96	33.1
Merged-chr12-54823072-3	chr12	54822558	54823558	+	980.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27396.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	18.31	29.03	26.82	18.89	14.93	16.08	33.8	20.78	18.74
Merged-chr3-83855857-2	chr3	83855358	83856358	+	980.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-14250.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	9.72	6.45	7.4	9.45	4.2	1.61	7.39	4.86	3.75
Merged-chr4-47319707-3	chr4	47319144	47320144	+	980.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33578.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	50.34	23.5	54.57	42.51	26.12	49.03	39.08	31.84	44.34
Merged-chr2-145832801-5	chr2	145832292	145833292	+	980.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	46676.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	180.77	182.01	102.67	178.13	144.15	139.86	129.91	159.62	76.19
Merged-chr3-116185429-3	chr3	116184938	116185938	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-55750.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	89.81	116.12	80.47	94.46	129.22	96.45	143.64	202.95	85.56
Merged-chr4-129335969-3	chr4	129335448	129336448	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025970)	promoter-TSS (NM_025970)	-78.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	140.15	159.89	112.84	138.99	161.88	149.5	191.17	245.84	83.06
Merged-chr13-95844469-3	chr13	95843977	95844977	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	47445.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	66.36	83.86	38.85	66.8	48.52	52.25	136.25	165.81	101.17
Merged-chr13-93187997-3	chr13	93187499	93188499	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154997, intron 1 of 15)	intron (NR_154997, intron 1 of 15)	4418.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	89.81	72.34	51.8	67.47	47.58	48.23	96.11	112.31	59.95
Merged-chr1-170742587-3	chr1	170742095	170743095	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 15 of 15)	Lx8|LINE|L1	98063.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	10.87	3.69	13.87	8.77	5.13	11.25	11.62	8.4	1.25
Merged-chr17-5849719-3	chr17	5849212	5850212	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	8332.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	85.24	99.99	80.47	121.45	130.16	94.85	103.51	97.72	58.71
Merged-chr9-57259939-3	chr9	57259423	57260423	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028820, intron 1 of 2)	intron (NM_028820, intron 1 of 2)	2676.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	4.0	9.22	1.85	6.75	2.8	1.61	6.34	2.21	8.74
Merged-chr14-54771184-3	chr14	54770666	54771666	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	10720.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	72.08	76.03	46.25	64.77	39.65	55.46	141.53	188.36	70.57
Merged-chr13-100642645-3	chr13	100642147	100643147	+	980.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283011, intron 4 of 17)	B2_Mm2|SINE|B2	8414.0	NM_001044371	19356.0	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	14.87	12.9	4.62	15.52	15.86	17.68	22.18	32.28	14.99
Merged-chr16-93780831-3	chr16	93780317	93781317	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357118, intron 23 of 35)	intron (NM_001357118, intron 23 of 35)	14084.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	34.32	23.96	16.65	39.81	17.26	12.06	21.12	23.43	13.74
Merged-chr13-34794014-3	chr13	34793533	34794533	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54391.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	46.91	61.28	53.65	78.27	55.51	66.71	47.53	52.18	36.22
Merged-chr3-14881573-3	chr3	14881075	14882075	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44D|DNA|TcMar-Tigger	-4694.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	16.02	8.29	1.85	6.07	3.27	6.43	6.34	5.75	5.0
Merged-chr17-8165779-3	chr17	8165250	8166250	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201230, intron 1 of 11)	CpG	232.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	67.5	89.39	152.62	72.87	85.84	91.63	79.21	68.09	29.98
Merged-chr10-8760729-3	chr10	8760227	8761227	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	125343.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	101.25	134.09	48.1	121.45	89.57	50.64	118.29	83.13	56.83
Merged-chr5-100632940-3	chr5	100632445	100633445	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41311.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	18.31	13.82	12.02	18.22	9.33	20.09	19.01	12.82	16.86
Merged-chr4-139242627-3	chr4	139242141	139243141	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	48530.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	56.06	62.67	55.5	122.8	84.9	82.79	80.27	118.94	21.23
Merged-chrX-167196540-3	chrX	167196034	167197034	+	980.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	12684.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	87.52	105.52	49.95	83.66	78.84	81.18	62.31	89.32	38.72
Merged-chr10-96328655-3	chr10	96328154	96329154	+	980.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	102447.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	21.17	16.59	12.02	14.84	14.0	7.23	21.12	15.92	3.75
Merged-chr13-23700969-3	chr13	23700476	23701476	+	980.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2518.0	NM_178208	319155.0	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	26.89	37.78	39.77	29.01	18.19	27.33	33.8	23.88	19.36
Merged-chr11-113751131-6	chr11	113750615	113751615	+	980.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020006)	promoter-TSS (NM_020006)	45.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	142.44	158.51	117.47	127.52	115.23	146.29	144.7	153.43	94.3
Merged-chr1-191115772-4	chr1	191115281	191116281	+	980.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	17367.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	171.04	150.68	109.14	149.11	105.43	112.53	144.7	160.06	110.54
Merged-chr2-165858962-3	chr2	165858432	165859432	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-759.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	133.86	124.87	122.09	128.2	92.37	130.21	121.46	129.11	129.28
Merged-chr5-31201209-3	chr5	31200710	31201710	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177901, intron 1 of 2)	intron (NM_001177901, intron 1 of 2)	832.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	374.12	463.09	244.19	331.96	343.82	225.86	363.33	511.15	230.45
Merged-chr9-104063012-3	chr9	104062485	104063485	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175324)	promoter-TSS (NM_175324)	136.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	56.06	85.25	68.45	56.0	60.65	108.51	88.72	67.65	31.85
Merged-chr7-122087739-3	chr7	122087239	122088239	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14109.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	45.76	50.23	52.72	51.95	48.05	50.64	54.92	53.5	24.36
Merged-chr13-9419382-3	chr13	9418886	9419886	+	980.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142861.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	33.18	44.7	46.25	34.41	31.72	28.94	28.52	20.34	23.11
Merged-chr17-10702998-3	chr17	10702494	10703494	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	137197.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	20.59	14.28	14.8	120.77	116.63	118.16	13.73	14.15	8.74
Merged-chr9-21316964-3	chr9	21316469	21317469	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-3750.0	NM_001359227	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	9.72	6.91	11.1	19.57	14.0	18.49	16.9	17.24	16.24
Merged-chr7-66355717-3	chr7	66355229	66356229	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	25995.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	106.97	178.78	135.97	103.23	107.76	121.37	126.74	133.98	100.55
Merged-chr18-60268788-1	chr18	60268288	60269288	+	980.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001034859, exon 2 of 2)	3' UTR (NM_001034859, exon 2 of 2)	4479.0	NM_001034859	225594.0	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	7.44	11.06	8.32	7.42	4.67	13.66	5.28	7.96	5.0
Merged-chr16-17562070-3	chr16	17561577	17562577	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029053)	promoter-TSS (NM_029053)	192.0	NM_001159561	18440.0	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	42.33	24.42	7.4	61.4	55.05	24.11	8.45	3.98	2.5
Merged-chr9-61681206-3	chr9	61680712	61681712	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233298.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	6.86	2.3	1.85	0.67	3.73	3.22	7.39	3.54	2.5
Merged-chr14-76217300-3	chr14	76216791	76217791	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34171.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	85.24	58.06	9.25	55.33	27.99	6.43	68.65	68.98	19.36
Merged-chr1-97660810-3	chr1	97660322	97661322	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355072, exon 1 of 3)	5' UTR (NM_001355072, exon 1 of 3)	854.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	129.28	119.8	78.62	116.73	109.63	108.51	146.81	116.73	103.67
Merged-chr5-72851955-3	chr5	72851462	72852462	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	L2|LINE|L2	16486.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	9.15	2.76	7.4	6.07	7.46	5.63	3.17	3.98	1.25
Merged-chr10-44070830-3	chr10	44070322	44071322	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65976.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	81.8	82.48	66.6	57.35	74.17	98.06	80.27	87.11	52.46
Merged-chr16-95898094-3	chr16	95897587	95898587	+	980.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040485, exon 2 of 4)	non-coding (NR_040485, exon 2 of 4)	626.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	11.44	10.6	3.7	14.84	4.67	4.02	10.56	2.65	1.25
Merged-chr9-41136711-3	chr9	41136199	41137199	+	980.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	21363.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	115.55	103.68	63.82	141.02	80.24	106.1	76.05	44.22	46.22
Merged-chr10-121367293-3	chr10	121366846	121367846	+	980.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	2256.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	93.24	56.68	45.32	87.04	70.44	55.46	136.25	121.6	66.82
Merged-chr7-29039800-3	chr7	29039289	29040289	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 87 of 105)	MER91B|DNA|hAT-Tip100	43905.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	5.72	5.99	2.77	12.14	5.13	12.86	5.28	2.65	9.99
Merged-chr17-29671222-3	chr17	29670701	29671701	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028791, intron 2 of 23)	MTD-int|LTR|ERVL-MaLR	10606.0	NM_028791	74157.0	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	12.01	10.6	17.57	9.45	11.2	11.25	3.17	4.42	11.87
Merged-chr6-113698047-3	chr6	113697464	113698464	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033463, exon 2 of 8)	exon (NM_001033463, exon 2 of 8)	914.0	NM_001033463	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	199.07	158.51	147.99	221.31	177.27	162.37	162.65	126.02	111.17
Merged-chr16-91462840-3	chr16	91462341	91463341	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-2263.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	204.8	192.61	149.84	215.23	143.22	151.11	239.75	242.31	119.91
Merged-chr1-135536540-3	chr1	135536055	135537055	+	980.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	48800.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	121.28	81.1	49.95	66.12	30.79	32.15	11.62	11.5	17.49
Merged-chr19-46148521-3	chr19	46147979	46148979	+	980.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008852)	promoter-TSS (NM_008852)	-154.0	NM_008852	18742.0	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	6.86	3.23	3.7	12.14	1.87	0.0	3.17	1.33	8.74
Merged-chr19-36375423-5	chr19	36374940	36375940	+	980.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3627.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	20.59	15.67	5.55	24.29	14.46	13.66	24.29	17.69	4.37
Merged-chr18-61632513-3	chr18	61632021	61633021	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7132.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	18.31	7.37	2.77	20.92	13.06	13.66	28.52	15.48	13.12
Merged-chr2-154264645-3	chr2	154264119	154265119	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175167, intron 6 of 14)	intron (NM_175167, intron 6 of 14)	6740.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	24.6	19.81	2.77	45.88	43.39	12.06	44.36	31.84	6.25
Merged-chr19-11533583-3	chr19	11533079	11534079	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3270.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	14.87	17.51	17.57	26.99	17.73	20.09	15.84	12.38	20.61
Merged-chr8-117224808-3	chr8	117224343	117225343	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32176.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	42.33	42.39	23.12	49.93	48.98	28.94	59.15	61.9	18.74
Merged-chrX-142966686-3	chrX	142966192	142967192	+	980.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019496)	promoter-TSS (NM_019496)	36.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	35.47	22.58	16.65	31.04	14.46	20.9	40.14	18.57	8.74
Merged-chr5-112972469-3	chr5	112971982	112972982	+	980.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 3 of 20)	intron (NM_001285806, intron 3 of 20)	43056.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	18.31	19.35	33.3	29.69	26.59	40.99	17.96	25.2	14.36
Merged-chr5-90853338-2	chr5	90852838	90853838	+	980.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37907.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	24.03	25.34	8.32	68.82	36.85	28.13	11.62	6.19	2.5
Merged-chr4-35165413-3	chr4	35164913	35165913	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7929.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	7.44	5.99	3.7	35.76	35.92	45.01	39.08	26.09	51.21
Merged-chr6-97867376-3	chr6	97866873	97867873	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	60315.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	70.93	91.24	61.97	64.77	42.45	66.71	55.98	56.16	61.83
Merged-chr2-166980338-3	chr2	166979862	166980862	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	URR1B|DNA|hAT-Charlie	-15645.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	58.92	65.43	52.72	85.69	56.91	40.19	76.05	106.12	36.85
Merged-chr14-50819910-1	chr14	50819410	50820410	+	980.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009632, intron 12 of 15)	intron (NM_009632, intron 12 of 15)	11994.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	8.01	4.15	12.02	4.05	6.06	10.45	70.76	93.3	48.71
Merged-chr17-65771189-3	chr17	65770691	65771691	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	1561.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	62.93	50.23	31.45	66.8	41.52	42.6	72.88	65.0	55.58
Merged-chr2-22744881-3	chr2	22744379	22745379	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29448.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	205.94	212.88	158.17	114.03	90.04	134.23	142.59	128.67	83.69
Merged-chr4-8916468-1	chr4	8915968	8916968	+	980.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165144.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	18.88	10.14	13.87	15.52	7.93	11.25	40.14	19.9	35.6
Merged-chr11-54100945-3	chr11	54100472	54101472	+	980.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011031)	promoter-TSS (NM_011031)	48.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	25.17	6.91	12.95	31.04	20.53	24.11	25.35	7.96	12.49
Merged-chrX-166238936-3	chrX	166238428	166239428	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023122)	promoter-TSS (NM_023122)	-15.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	17.73	12.44	5.55	20.92	13.06	2.41	6.34	10.17	5.0
Merged-chr9-108120856-3	chr9	108120366	108121366	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007567, intron 3 of 11)	intron (NM_007567, intron 3 of 11)	-12852.0	NR_126078	76873.0	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	12.59	5.99	4.62	6.75	1.87	4.82	8.45	1.77	11.24
Merged-chr17-17878677-3	chr17	17878170	17879170	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	L1_Mus4|LINE|L1	5269.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	41.19	52.07	30.52	52.63	34.52	47.42	53.87	57.92	41.84
Merged-chr11-96034854-3	chr11	96034356	96035356	+	980.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033568)	promoter-TSS (NM_033568)	-29.0	NM_033568	27681.0	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	114.98	104.14	87.87	71.52	74.64	69.13	118.29	104.79	56.83
Merged-chr4-155068166-3	chr4	155067670	155068670	+	980.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042407, intron 2 of 5)	intron (NM_001042407, intron 2 of 5)	1140.0	NM_001042407	668173.0	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	58.92	47.0	28.67	35.76	31.72	36.97	77.1	65.88	34.97
Merged-chr1-16618020-6	chr1	16617525	16618525	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271016, intron 1 of 6)	intron (NM_001271016, intron 1 of 6)	1313.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	102.97	149.29	67.52	72.87	105.43	73.14	98.23	114.96	86.18
Merged-chr3-89295697-4	chr3	89295222	89296222	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14771.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	56.63	49.76	46.25	85.01	48.98	57.87	53.87	56.6	31.85
Merged-chr1-161594826-3	chr1	161594342	161595342	+	980.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	100185.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	29.75	22.12	12.02	14.84	8.86	16.08	23.24	15.92	12.49
Merged-chrX-167210907-3	chrX	167210421	167211421	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1703.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	118.42	123.95	66.6	112.68	90.5	69.93	110.9	126.46	75.57
Merged-chr18-9503234-3	chr18	9502743	9503743	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53089.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	29.17	15.67	7.4	60.05	44.78	12.06	29.57	23.88	1.87
Merged-chr6-7753359-3	chr6	7752843	7753843	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60161.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	14.3	10.6	0.0	11.47	4.67	8.04	9.51	2.21	3.12
Merged-chr18-67933976-3	chr18	67933460	67934460	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	CpG	787.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	44.62	51.15	39.77	67.47	62.05	61.09	39.08	19.9	17.49
Merged-chr10-68280096-3	chr10	68279557	68280557	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1331.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	160.18	161.74	103.59	148.44	121.76	122.98	180.61	208.26	81.19
Merged-chr7-127448713-3	chr7	127448197	127449197	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175163, exon 1 of 3)	exon (NM_175163, exon 1 of 3)	461.0	NM_175163	71131.0	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	79.52	68.2	74.92	63.42	55.51	89.22	59.15	45.54	49.96
Merged-chr2-59462267-3	chr2	59461766	59462766	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-22387.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	10.87	4.15	4.62	11.47	3.73	5.63	5.28	0.44	3.75
Merged-chr5-34501770-3	chr5	34501276	34502276	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12203.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	49.77	45.16	36.07	72.19	38.25	28.94	74.99	65.44	38.1
Merged-chr11-50239351-3	chr11	50238865	50239865	+	980.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008521)	promoter-TSS (NM_008521)	-833.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	45.19	50.69	45.32	54.65	56.45	61.09	77.1	74.73	51.84
Merged-chr8-41006927-3	chr8	41006433	41007433	+	980.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10535.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	85.81	67.74	26.82	67.47	56.91	49.03	73.93	93.74	44.34
Merged-chr13-119801127-3	chr13	119800641	119801641	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10019.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	12.59	3.23	3.7	3.37	2.8	1.61	4.22	2.21	0.0
Merged-chr12-36364518-3	chr12	36364023	36365023	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16927.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	9.72	8.29	10.17	10.12	9.33	11.25	29.57	16.8	8.74
Merged-chr1-121509311-3	chr1	121508812	121509812	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010483)	TTS (NM_010483)	19153.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	100.68	89.39	65.67	51.28	36.85	61.09	91.89	99.49	44.34
Merged-chr5-139826874-3	chr5	139826368	139827368	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356963)	promoter-TSS (NM_001356963)	26.0	NM_001356963	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	44.05	41.01	27.75	37.11	48.98	58.68	38.02	29.18	32.48
Merged-chr11-120042617-3	chr11	120042094	120043094	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198787)	promoter-TSS (NM_001198787)	-813.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	225.96	190.3	158.17	292.83	249.58	241.14	208.07	248.06	119.28
Merged-chr18-17732179-1	chr18	17731679	17732679	+	980.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151189.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.58	6.91	7.4	20.24	10.26	8.84	2.11	2.65	1.87
Merged-chr1-131672566-3	chr1	131672077	131673077	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 9 of 9)	intron (NM_007799, intron 9 of 9)	-16118.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	16.02	5.99	6.47	4.72	5.6	1.61	7.39	6.19	3.75
Merged-chr10-13560427-3	chr10	13559919	13560919	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025748, intron 3 of 5)	intron (NM_025748, intron 3 of 5)	-7277.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	36.04	29.03	14.8	37.78	30.79	20.9	26.4	33.16	28.73
Merged-chr3-103859105-3	chr3	103858603	103859603	+	980.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104070)	promoter-TSS (NR_104070)	-692.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	137.29	158.97	109.14	107.28	69.04	84.4	144.7	184.83	106.17
Merged-chr14-21049554-3	chr14	21049055	21050055	+	980.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	intron (NM_018829, intron 1 of 8)	2887.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	36.04	45.62	37.92	25.64	15.39	40.99	29.57	27.41	17.49
Merged-chr2-5772672-3	chr2	5772165	5773165	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57903.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	37.18	24.88	29.6	14.17	6.06	12.06	24.29	22.55	22.48
Merged-chr12-85341304-3	chr12	85340754	85341754	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-1892.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	87.52	117.96	54.57	87.04	52.72	45.01	99.28	101.7	45.59
Merged-chr3-86998778-3	chr3	86998278	86999278	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007639, exon 2 of 6)	exon (NM_007639, exon 2 of 6)	562.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	80.66	123.95	107.29	108.63	108.7	105.3	76.05	102.14	61.83
Merged-chr5-30651632-3	chr5	30651130	30652130	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	3691.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	197.36	189.38	149.84	266.51	318.16	262.84	205.96	207.38	90.56
Merged-chr14-51063924-3	chr14	51063436	51064436	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Leu-CTY|tRNA|tRNA	-6694.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	153.88	180.63	91.57	116.05	107.3	113.33	146.81	179.08	94.93
Merged-chrX-167330594-3	chrX	167330164	167331164	+	980.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290756)	promoter-TSS (NM_001290756)	-93.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	79.52	76.49	37.0	82.32	71.38	45.82	102.45	81.36	63.08
Merged-chr17-21517089-3	chr17	21516712	21517712	+	980.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18327.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	38.9	42.39	49.02	46.56	48.52	50.64	40.14	38.03	34.97
Merged-chr5-125376087-3	chr5	125375580	125376580	+	980.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13937.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	27.46	29.49	21.27	17.54	14.0	12.86	15.84	11.5	9.99
Merged-chr18-67768507-3	chr18	67767941	67768941	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	8.01	2.76	0.0	4.05	3.73	3.22	5.28	3.98	1.25
Merged-chr5-115488312-3	chr5	115487807	115488807	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3823.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	135.58	140.54	103.59	117.4	90.04	92.44	115.12	128.23	73.69
Merged-chr16-84584045-3	chr16	84583529	84584529	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95760.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	139.01	99.99	66.6	19.57	18.66	5.63	78.16	69.42	44.34
Merged-chr10-77531136-3	chr10	77530629	77531629	+	980.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	781.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	169.33	144.23	140.59	188.92	147.42	139.86	280.95	270.16	73.69
Merged-chr7-4063140-3	chr7	4062552	4063552	+	980.0476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178611, intron 1 of 6)	intron (NM_178611, intron 1 of 6)	152.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	159.6	202.75	132.27	145.06	153.01	163.97	148.92	195.88	136.77
Merged-chr15-86185113-4	chr15	86184638	86185638	+	980.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155352)	promoter-TSS (NR_155352)	-590.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	274.01	336.37	299.68	303.62	356.41	335.18	365.44	371.86	243.57
Merged-chr8-88293781-1	chr8	88293281	88294281	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037724)	promoter-TSS (NM_001037724)	-423.0	NM_001037724	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	16.02	11.52	6.47	30.36	26.12	15.27	24.29	14.59	18.74
Merged-chr16-23984920-4	chr16	23984467	23985467	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	-3684.0	NM_001348026	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	117.27	85.25	94.35	97.83	73.71	90.83	104.56	66.77	76.19
Merged-chr14-60830296-3	chr14	60829797	60830797	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027436, intron 12 of 18)	intron (NM_027436, intron 12 of 18)	45731.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	28.03	31.33	16.65	30.36	18.66	17.68	43.3	65.88	26.23
Merged-chr2-51089514-3	chr2	51089070	51090070	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59541.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	171.62	182.93	73.07	138.99	144.62	67.52	100.34	119.83	78.07
Merged-chr13-83074755-3	chr13	83074276	83075276	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-376443.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	53.2	78.33	49.95	62.75	70.91	53.85	63.37	89.32	54.96
Merged-chr5-137747645-1	chr5	137747145	137748145	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029805, exon 2 of 6)	exon (NM_029805, exon 2 of 6)	1676.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	23.45	36.86	41.62	20.92	30.32	62.7	46.47	31.39	46.22
Merged-chr9-70679549-2	chr9	70679031	70680031	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007399, intron 1 of 15)	CpG	549.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	110.41	79.25	112.84	105.26	99.83	99.67	127.8	101.7	69.32
Merged-chr11-117168834-3	chr11	117168342	117169342	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30819.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	13.16	11.98	16.65	37.11	34.52	39.39	28.52	22.55	7.49
Merged-chr10-28540790-1	chr10	28540290	28541290	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-127570.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	5.72	4.15	4.62	4.72	5.6	4.82	2.11	4.42	2.5
Merged-chr10-62219062-2	chr10	62218549	62219549	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	12169.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	81.8	101.37	62.9	58.03	58.78	75.56	36.97	30.95	21.86
Merged-chr19-40832556-1	chr19	40832056	40833056	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172839, intron 2 of 5)	MIR|SINE|MIR	1277.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	13.73	5.53	5.55	13.49	12.6	5.63	16.9	9.29	5.0
Merged-chr4-9084141-1	chr4	9083641	9084641	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185152.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.86	2.76	0.0	2.7	2.8	4.02	3.17	3.98	3.75
Merged-chr19-47004261-3	chr19	47003744	47004744	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10454.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	21.17	13.36	9.25	24.29	9.8	20.9	9.51	2.21	1.25
Merged-chr7-74724847-2	chr7	74724344	74725344	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-170064.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	9.15	4.15	8.32	3.37	2.33	14.47	2.11	0.88	3.75
Merged-chr4-127250130-3	chr4	127249640	127250640	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6356.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	4.0	2.76	3.7	6.75	2.33	1.61	5.28	5.75	7.49
Merged-chr13-59669022-3	chr13	59668530	59669530	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	6754.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	52.06	71.42	37.92	43.86	50.85	59.48	59.15	59.25	67.45
Merged-chr1-171102861-4	chr1	171102361	171103361	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18800.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	58.92	42.39	39.77	62.75	44.32	39.39	9.51	33.6	27.48
Merged-chrX-155278621-2	chrX	155278118	155279118	+	980.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019736, intron 5 of 14)	intron (NM_019736, intron 5 of 14)	16175.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	25.17	14.28	3.7	15.52	9.8	12.86	15.84	17.69	11.87
Merged-chr2-129558762-3	chr2	129558266	129559266	+	980.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22164.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	33.18	17.51	3.7	36.43	23.33	8.04	34.85	30.95	16.24
Merged-chr5-25498387-5	chr5	25497914	25498914	+	979.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081383, exon 1 of 59)	exon (NM_001081383, exon 1 of 59)	369.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	153.88	171.41	180.37	145.06	201.07	192.91	161.6	143.26	114.29
Merged-chr5-110978570-3	chr5	110978075	110979075	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-25569.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	29.17	35.02	24.97	27.66	29.39	24.92	32.74	22.11	14.36
Merged-chr11-85131769-3	chr11	85131267	85132267	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 1 of 33)	intron (NM_001029934, intron 1 of 33)	8188.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	28.6	46.08	20.35	31.71	32.66	28.94	44.36	51.29	20.61
Merged-chr11-19963898-3	chr11	19963410	19964410	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	39468.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	44.05	27.19	7.4	35.76	14.93	21.7	14.79	5.31	12.49
Merged-chr16-56729278-3	chr16	56728767	56729767	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172825, intron 15 of 15)	MTB|LTR|ERVL-MaLR	-11817.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	9.15	9.22	20.35	20.24	14.0	30.54	11.62	10.17	21.23
Merged-chr13-20211948-3	chr13	20211452	20212452	+	979.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	121445.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	22.31	29.03	11.1	26.99	18.19	20.09	43.3	34.93	28.73
Merged-chr11-84880711-3	chr11	84880223	84881223	+	979.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077636)	promoter-TSS (NM_001077636)	-438.0	NM_001077636	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	59.49	43.77	56.42	92.44	58.31	67.52	76.05	65.0	36.22
Merged-chr5-33219341-2	chr5	33218829	33219829	+	979.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1091.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	2.29	0.92	0.0	12.14	4.67	4.82	5.28	3.1	3.75
Merged-chr13-112361818-3	chr13	112361314	112362314	+	979.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 8 of 11)	L1MD3|LINE|L1	73296.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	14.3	9.68	3.7	17.54	13.53	9.65	7.39	7.96	7.49
Merged-chr2-148408244-3	chr2	148407713	148408713	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009378)	promoter-TSS (NM_009378)	-25.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	34.9	39.63	35.15	43.18	39.65	56.27	35.91	41.56	28.1
Merged-chr5-125409023-3	chr5	125408519	125409519	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-19002.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	20.02	22.12	22.2	20.92	15.86	16.88	10.56	18.57	23.73
Merged-chr14-64753581-3	chr14	64753081	64754081	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	101050.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	18.88	13.36	24.05	25.64	16.33	21.7	12.67	11.05	13.12
Merged-chr1-144241099-3	chr1	144240611	144241611	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	7993.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	26.31	6.91	5.55	9.45	3.27	8.04	6.34	1.77	7.49
Merged-chr3-81983322-3	chr3	81982813	81983813	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7585.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	78.94	125.79	46.25	173.4	209.46	159.95	164.76	183.94	88.06
Merged-chrX-7293158-3	chrX	7292658	7293658	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	26200.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	10.3	8.29	12.95	16.87	4.67	11.25	11.62	7.07	18.74
Merged-chr5-139371369-3	chr5	139370876	139371876	+	979.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-1631.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	205.37	243.29	184.07	246.95	246.32	204.97	217.57	360.37	163.63
Merged-chr15-67767807-3	chr15	67767307	67768307	+	979.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	491049.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.44	9.68	6.47	12.82	4.67	14.47	12.67	5.31	13.12
Merged-chr10-59381827-2	chr10	59381329	59382329	+	979.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-21856.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	18.88	35.02	41.62	35.76	18.66	38.58	11.62	0.0	2.5
Merged-chr18-80483744-3	chr18	80483247	80484247	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14080.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	44.62	43.77	32.37	34.41	47.12	56.27	44.36	30.51	28.73
Merged-chr19-4213579-3	chr19	4213089	4214089	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-649.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	113.84	90.77	102.67	110.65	104.96	107.71	71.82	57.92	65.58
Merged-chr17-25797152-3	chr17	25796651	25797651	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133719)	promoter-TSS (NM_133719)	-106.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	12.59	5.53	14.8	5.4	2.8	14.47	10.56	8.4	6.87
Merged-chr8-120537286-3	chr8	120536788	120537788	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	-121.0	NM_001145896	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	92.67	71.42	89.72	124.15	92.37	123.78	139.42	109.66	77.44
Merged-chr5-5749380-3	chr5	5748877	5749877	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-60.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.86	3.23	1.85	7.42	4.67	3.22	1.06	0.88	9.99
Merged-chr9-42837726-3	chr9	42837232	42838232	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	106639.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	9.15	5.99	1.85	12.14	3.27	6.43	3.17	3.98	2.5
Merged-chr4-103215331-3	chr4	103214822	103215822	+	979.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356276)	promoter-TSS (NM_001356276)	-146.0	NM_177732	242585.0	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	111.55	107.36	132.27	72.87	76.97	124.59	114.07	53.5	52.46
Merged-chr7-83858136-3	chr7	83857623	83858623	+	979.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3A|LINE|L1	26218.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	22.88	14.28	12.95	24.29	11.66	6.43	23.24	11.94	5.0
Merged-chr13-62785767-4	chr13	62785295	62786295	+	979.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256065)	promoter-TSS (NM_001256065)	13.0	NM_001256065	380850.0	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	11.44	14.75	11.1	16.87	14.46	23.31	25.35	21.22	1.87
Merged-chr15-97415690-3	chr15	97415180	97416180	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168393.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	9.15	4.15	5.55	17.54	6.06	4.82	8.45	12.82	1.25
Merged-chr1-89575663-3	chr1	89575179	89576179	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108213.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	56.63	49.3	34.22	33.06	32.66	42.6	19.01	7.52	16.24
Merged-chr8-40580487-3	chr8	40579972	40580972	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 7 of 13)	intron (NM_001040699, intron 7 of 13)	54320.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.57	5.99	1.85	2.7	4.2	6.43	6.34	4.86	2.5
Merged-chr2-28698796-3	chr2	28698270	28699270	+	979.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027283, intron 1 of 4)	intron (NM_027283, intron 1 of 4)	881.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	68.65	44.24	49.95	47.23	39.65	41.8	42.25	31.39	24.98
Merged-chr13-44538402-3	chr13	44537907	44538907	+	979.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98680.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	12.01	8.29	2.77	14.84	5.13	6.43	13.73	7.52	9.37
Merged-chr9-94537448-4	chr9	94536954	94537954	+	979.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033145, exon 1 of 3)	exon (NM_001033145, exon 1 of 3)	627.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	94.96	69.12	104.52	74.22	64.38	73.14	78.16	52.18	58.08
Merged-chr18-3005645-5	chr18	3005106	3006106	+	979.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117806.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	63.5	99.53	32.37	56.0	109.63	61.89	48.58	50.85	39.35
Merged-chr3-142621347-3	chr3	142620857	142621857	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010260, intron 1 of 10)	Lx8|LINE|L1	694.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	206.51	217.03	165.57	160.58	132.95	110.12	127.8	133.09	58.71
Merged-chr14-22847832-3	chr14	22847319	22848319	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	246752.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	20.02	33.18	17.57	31.71	25.19	30.54	19.01	10.61	12.49
Merged-chr8-79160073-3	chr8	79159570	79160570	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	RCHARR1|DNA|hAT-Charlie	88513.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	40.04	12.44	11.1	39.81	24.72	10.45	33.8	19.46	2.5
Merged-chrX-7679895-3	chrX	7679393	7680393	+	979.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037581, intron 2 of 5)	intron (NR_037581, intron 2 of 5)	1196.0	NM_018832	54634.0	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	4.0	5.53	3.7	4.72	2.8	1.61	2.11	2.21	3.75
Merged-chr13-111809484-6	chr13	111808999	111809999	+	979.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011945)	promoter-TSS (NM_011945)	-506.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	98.97	53.45	59.2	115.38	71.38	72.34	92.94	66.33	47.46
Merged-chr4-59436151-3	chr4	59435648	59436648	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 1 of 16)	MTD|LTR|ERVL-MaLR	2485.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	17.16	13.82	9.25	17.54	11.66	25.72	12.67	11.05	5.62
Merged-chr8-126582716-3	chr8	126582222	126583222	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10714.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	47.48	34.56	44.4	70.17	46.18	34.56	35.91	38.91	39.35
Merged-chr5-29290274-3	chr5	29289785	29290785	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 8 of 16)	intron (NM_020295, intron 8 of 16)	88105.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	28.03	22.12	20.35	35.76	34.99	36.17	36.97	33.6	15.61
Merged-chr1-9597577-1	chr1	9597077	9598077	+	979.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015470, intron 3 of 4)	L1_Mus3|LINE|L1	-3690.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	2.86	2.76	1.85	6.07	3.73	10.45	2.11	5.75	1.25
Merged-chr10-62111010-3	chr10	62110476	62111476	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027251)	promoter-TSS (NM_027251)	-8.0	NM_001358253	69894.0	Mm.294126	NM_027251	ENSMUSG00000020083	Fam241b	2010107G23Rik|AA545165	family with sequence similarity 241, member B	protein-coding	4.0	3.23	3.7	1.35	0.93	1.61	1.06	1.77	0.62
Merged-chr19-5771252-4	chr19	5770673	5771673	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155264, intron 1 of 15)	CpG	246.0	NM_023912	78891.0	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	204.8	195.37	182.22	197.02	178.67	171.21	185.89	185.71	110.54
Merged-chr12-111572570-1	chr12	111572070	111573070	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_045295, exon 2 of 2)	non-coding (NR_045295, exon 2 of 2)	1832.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	16.59	11.98	7.4	6.75	2.33	3.22	4.22	4.86	8.74
Merged-chr3-20295124-3	chr3	20294626	20295626	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19393.0	NM_029706	76703.0	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	29.75	34.56	21.27	20.92	29.86	36.17	26.4	25.2	19.98
Merged-chr1-191266758-3	chr1	191266264	191267264	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42310.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	32.04	24.42	7.4	71.52	47.58	57.87	28.52	21.22	9.99
Merged-chr6-143225096-3	chr6	143224594	143225594	+	979.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20794.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	18.88	17.51	0.0	22.27	19.13	13.66	17.96	11.05	9.99
Merged-chr18-75342295-2	chr18	75341787	75342787	+	979.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24801.0	NR_155535	102636262.0	Mm.421168	NR_155535		Gm20544	-	predicted gene 20544	ncRNA	44.05	52.53	48.1	41.83	48.52	72.34	69.71	82.24	58.08
Merged-chrX-150813163-3	chrX	150812668	150813668	+	979.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358568)	promoter-TSS (NM_001358568)	-166.0	NM_001358566	80884.0	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	4.58	4.15	11.1	5.4	5.13	8.04	4.22	8.84	0.0
Merged-chr6-93758283-3	chr6	93757797	93758797	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029850, intron 8 of 23)	Tigger7|DNA|TcMar-Tigger	154666.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	56.06	51.61	27.75	72.19	83.04	58.68	48.58	44.66	13.74
Merged-chr6-52160249-3	chr6	52159751	52160751	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131181, intron 1 of 1)	intron (NR_131181, intron 1 of 1)	1727.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	28.6	37.78	31.45	22.27	15.86	17.68	70.76	33.6	44.34
Merged-chr1-39614997-3	chr1	39614491	39615491	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36191.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	70.36	52.07	29.6	50.6	34.52	73.14	60.2	37.58	71.82
Merged-chr2-74825849-3	chr2	74825355	74826355	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016804)	promoter-TSS (NM_016804)	43.0	NM_016804	53375.0	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	45.76	38.25	35.15	49.93	41.05	30.54	50.7	33.16	35.6
Merged-chr17-35050371-3	chr17	35049856	35050856	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033444, exon 1 of 6)	5' UTR (NM_033444, exon 1 of 6)	113.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	183.63	199.52	165.57	165.98	122.69	162.37	240.81	287.85	192.35
Merged-chr6-113334233-3	chr6	113333733	113334733	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_149720)	TTS (NR_149720)	7257.0	NM_010957	18294.0	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	78.94	70.96	86.02	86.36	68.11	104.49	100.34	87.99	89.31
Merged-chr6-71537455-3	chr6	71536952	71537952	+	979.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6400.0	NM_001361405	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	3.43	5.99	3.7	7.42	7.0	17.68	6.34	7.96	11.24
Merged-chr1-58711683-5	chr1	58711204	58712204	+	979.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289704, intron 1 of 9)	CpG	213.0	NR_149256	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	496.54	563.08	321.88	533.7	489.37	428.42	557.67	588.52	337.25
Merged-chr16-91477812-3	chr16	91477312	91478312	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7403.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	143.01	74.19	98.97	154.51	70.91	106.9	123.57	103.91	81.19
Merged-chr10-18194883-3	chr10	18194368	18195368	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	16022.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	12.59	17.97	5.55	31.04	14.93	16.88	15.84	13.71	10.62
Merged-chr2-132107230-3	chr2	132106743	132107743	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37865.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	160.18	122.11	126.72	153.16	148.82	102.08	174.27	155.64	64.33
Merged-chr5-105139612-3	chr5	105139108	105140108	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256005)	promoter-TSS (NM_001256005)	-22.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	81.23	72.8	74.92	50.6	25.19	33.76	102.45	101.7	81.81
Merged-chr7-46790861-3	chr7	46790357	46791357	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005247, intron 2 of 22)	intron (NM_001005247, intron 2 of 22)	5024.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	70.93	97.69	79.55	78.94	83.51	77.16	90.83	76.94	55.58
Merged-chr3-36064755-3	chr3	36064254	36065254	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1225.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	14.87	21.2	14.8	14.84	10.26	6.43	12.67	16.36	23.73
Merged-chr15-97379969-3	chr15	97379454	97380454	+	979.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 5 of 5)	intron (NM_172293, intron 5 of 5)	-132667.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	171.04	165.88	107.29	147.09	90.5	79.58	170.05	224.62	91.81
Merged-chr3-148202397-3	chr3	148201908	148202908	+	979.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	752227.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.29	1.38	3.7	6.07	2.33	6.43	6.34	0.88	1.25
Merged-chr10-117419039-3	chr10	117418496	117419496	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28439.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	45.19	28.11	39.77	72.19	46.18	70.73	76.05	74.28	44.97
Merged-chr12-46821625-2	chr12	46821150	46822150	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2875.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	3.43	8.75	3.7	6.75	8.86	2.41	11.62	5.31	7.49
Merged-chr15-97858661-1	chr15	97858161	97859161	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 9 of 9)	intron (NM_009504, intron 9 of 9)	-14159.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	3.43	3.23	0.92	6.07	2.33	4.82	8.45	2.21	0.0
Merged-chr2-34783757-2	chr2	34783213	34784213	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	11623.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	20.02	2.76	0.0	6.75	2.33	2.41	3.17	4.42	6.25
Merged-chr6-24954941-1	chr6	24954441	24955441	+	979.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	1184.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	7.44	1.84	3.7	11.47	8.4	8.04	4.22	3.54	5.62
Merged-chr17-35186176-5	chr17	35185661	35186661	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010734, intron 3 of 3)	intron (NM_010734, intron 3 of 3)	2279.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	90.38	57.6	62.9	95.81	50.38	69.13	81.33	82.69	66.82
Merged-chr4-126155262-3	chr4	126154756	126155756	+	979.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	7253.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	69.22	66.35	93.42	52.63	62.05	62.7	68.65	108.33	82.44
Merged-chr1-183978810-3	chr1	183978247	183979247	+	979.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	55251.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	93.82	97.23	71.22	81.64	37.32	47.42	134.14	132.21	59.33
Merged-chr16-4474641-3	chr16	4474147	4475147	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48428.0	NM_001347162	106393.0	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	217.95	221.64	197.94	246.95	271.97	225.86	227.08	289.18	109.92
Merged-chr14-26626803-3	chr14	26626311	26627311	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285467, intron 16 of 19)	intron (NM_001285467, intron 16 of 19)	-11323.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	28.6	32.72	31.45	39.81	31.26	41.8	45.42	46.43	25.61
Merged-chr6-66958674-3	chr6	66958178	66959178	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	61787.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	8.01	4.15	0.0	4.72	1.4	0.0	3.17	1.77	10.62
Merged-chr2-124790272-3	chr2	124789770	124790770	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136689.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	12.01	12.44	4.62	10.8	5.6	6.43	10.56	10.61	3.12
Merged-chr13-78237303-3	chr13	78236801	78237801	+	979.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045195)	TTS (NR_045195)	-38428.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	69.22	85.25	45.32	58.7	68.11	59.48	80.27	93.74	26.23
Merged-chr13-114078184-3	chr13	114077689	114078689	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	73403.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	19.45	16.13	7.4	10.12	4.67	6.43	9.51	3.54	2.5
Merged-chr2-11172335-3	chr2	11171846	11172846	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008859)	promoter-TSS (NM_008859)	-36.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	22.88	25.8	34.22	25.64	25.66	13.66	25.35	23.88	6.87
Merged-chr8-116268884-3	chr8	116268395	116269395	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-236120.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	21.74	18.89	20.35	14.17	11.66	23.31	30.63	31.84	18.74
Merged-chr9-124071696-3	chr9	124071208	124072208	+	979.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30475.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	30.32	30.87	31.45	37.78	31.26	47.42	49.64	34.49	33.72
Merged-chr18-65699325-3	chr18	65698824	65699824	+	979.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	1056.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	63.5	76.95	53.65	93.11	81.17	51.44	61.26	48.2	26.85
Merged-chr3-100530370-5	chr3	100529880	100530880	+	979.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41188.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	41.76	36.86	25.9	39.81	32.19	10.45	87.66	103.47	52.46
Merged-chr15-27234987-1	chr15	27234487	27235487	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231690.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	6.29	3.23	1.85	2.7	3.27	1.61	0.0	0.44	3.12
Merged-chr5-150836992-3	chr5	150836507	150837507	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115600.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	9.15	15.67	14.8	23.62	13.53	17.68	20.07	30.07	14.99
Merged-chr1-166788133-3	chr1	166787653	166788653	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106308.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	8.58	9.22	7.4	12.82	16.33	6.43	2.11	6.19	5.0
Merged-chr18-68160746-5	chr18	68160260	68161260	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-67186.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	82.38	70.04	28.67	147.76	93.77	71.54	66.54	57.48	14.99
Merged-chr10-111785707-3	chr10	111785212	111786212	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	88664.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	18.88	9.68	3.7	16.87	9.33	6.43	9.51	7.96	5.0
Merged-chr10-67700974-3	chr10	67700460	67701460	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-129001.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	41.76	40.55	34.22	32.39	30.79	11.25	43.3	39.35	16.24
Merged-chr8-94711498-3	chr8	94710988	94711988	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15246.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	62.35	60.82	48.1	33.06	31.72	56.27	50.7	58.37	42.47
Merged-chr14-118178582-3	chr14	118178073	118179073	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	41446.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	25.74	28.57	22.2	25.64	15.86	27.33	27.46	27.41	34.35
Merged-chr12-101082913-3	chr12	101082426	101083426	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038047, exon 1 of 4)	non-coding (NR_038047, exon 1 of 4)	475.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	286.03	394.43	260.84	257.07	354.08	314.28	285.17	306.42	201.1
Merged-chr6-97797747-1	chr6	97797247	97798247	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9311.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	18.31	22.12	12.95	22.27	15.39	43.4	19.01	17.24	24.36
Merged-chr12-16879923-3	chr12	16879420	16880420	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15058.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	66.93	75.11	41.62	76.24	52.72	62.7	23.24	29.63	23.73
Merged-chr1-181540620-3	chr1	181540118	181541118	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29167.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	9.72	4.61	6.47	6.75	7.0	9.65	3.17	4.42	1.25
Merged-chr15-79753191-3	chr15	79752692	79753692	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	10494.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	23.45	23.5	45.32	19.57	25.66	32.96	23.24	12.82	28.1
Merged-chr17-31060819-3	chr17	31060337	31061337	+	979.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 1 of 14)	intron (NM_009593, intron 1 of 14)	3143.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	96.11	71.42	42.55	163.28	104.5	108.51	137.3	114.96	34.35
Merged-chr8-104251302-1	chr8	104250802	104251802	+	979.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037841, intron 1 of 2)	intron (NM_001037841, intron 1 of 2)	441.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	79.52	67.74	99.89	120.77	71.38	101.28	86.61	84.45	63.7
Merged-chr5-92528752-3	chr5	92528258	92529258	+	979.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23101.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	18.31	12.44	26.82	16.19	19.13	14.47	25.35	19.46	11.87
Merged-chr3-31216160-3	chr3	31215643	31216643	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172861, intron 7 of 7)	L1MA4|LINE|L1	66223.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	5.72	5.99	3.7	10.8	9.8	14.47	6.34	7.07	2.5
Merged-chr4-148069925-3	chr4	148069440	148070440	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	18124.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	29.75	29.95	33.3	14.84	11.2	32.15	45.42	45.1	23.73
Merged-chr10-34129746-3	chr10	34129273	34130273	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1801.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	76.66	126.72	75.85	87.04	60.65	96.45	88.72	92.41	54.96
Merged-chr9-25532331-3	chr9	25531811	25532811	+	979.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	50714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	72.08	100.91	58.27	58.03	76.04	88.42	103.51	83.13	57.46
Merged-chr12-85601160-2	chr12	85600608	85601608	+	979.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1090.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	82.38	55.75	81.4	95.81	42.45	90.02	71.82	75.17	69.32
Merged-chr5-113626618-3	chr5	113626122	113627122	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	16981.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	10.3	15.21	10.17	22.27	20.53	22.51	26.4	15.03	10.62
Merged-chr8-83144821-3	chr8	83144314	83145314	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-20538.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	103.54	130.4	59.2	115.38	112.43	107.71	54.92	23.88	35.6
Merged-chr4-149690212-3	chr4	149689734	149690734	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	8474.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	44.62	28.57	33.3	33.74	23.79	20.9	30.63	20.34	16.86
Merged-chr3-52453301-3	chr3	52452801	52453801	+	979.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63663.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	18.31	13.36	29.6	23.62	6.06	19.29	14.79	18.57	6.25
Merged-chr5-98031201-3	chr5	98030681	98031681	+	979.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133738)	promoter-TSS (NM_133738)	-219.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	20.02	14.28	3.7	56.0	42.92	32.96	10.56	7.52	16.24
Merged-chr13-76024846-3	chr13	76024346	76025346	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6134.0	NM_001131069	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	5.72	5.99	7.4	6.75	2.33	3.22	8.45	6.19	6.25
Merged-chr6-99523458-3	chr6	99522956	99523956	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2463.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	153.88	149.29	105.44	170.03	102.17	94.04	163.71	162.72	93.05
Merged-chrX-53057249-3	chrX	53056735	53057735	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038184)	promoter-TSS (NR_038184)	-45.0	NR_038184	72575.0	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	6.29	5.53	9.25	10.12	5.13	12.06	3.17	4.86	14.99
Merged-chr16-36940415-3	chr16	36939919	36940919	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5436.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	61.21	76.49	48.1	51.95	30.32	66.71	104.56	108.33	42.47
Merged-chr10-96646270-3	chr10	96645814	96646814	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29313.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	46.91	22.12	59.2	47.23	23.33	34.56	34.85	30.07	23.11
Merged-chr6-17584164-3	chr6	17583663	17584663	+	979.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52847.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	8.58	5.99	4.62	11.47	3.73	1.61	11.62	17.24	11.87
Merged-chr5-146750045-2	chr5	146749547	146750547	+	979.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 6 of 8)	intron (NM_011669, intron 6 of 8)	44909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	14.87	20.74	5.55	26.99	12.6	22.51	32.74	27.86	14.99
Merged-chr7-49253197-3	chr7	49252738	49253738	+	979.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	7049.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	11.44	8.75	14.8	17.54	34.52	24.92	7.39	10.17	9.99
Merged-chr11-69802977-3	chr11	69802483	69803483	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027913)	promoter-TSS (NR_027913)	-686.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	14.87	5.53	11.1	14.17	10.73	13.66	12.67	8.4	6.25
Merged-chr4-132474791-3	chr4	132474274	132475274	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10853.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	40.04	22.12	21.27	34.41	48.98	42.6	29.57	25.65	17.49
Merged-chr11-46120338-3	chr11	46119848	46120848	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7556.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.72	7.37	3.7	15.52	7.93	3.22	19.01	19.46	6.25
Merged-chr12-3892913-3	chr12	3892423	3893423	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	1179.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	87.52	86.17	82.32	115.38	98.9	135.04	106.67	106.56	64.33
Merged-chr15-27682809-3	chr15	27682280	27683280	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1238.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	40.04	35.02	22.2	34.41	29.39	29.74	40.14	33.6	11.87
Merged-chr11-31871463-3	chr11	31870927	31871927	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290676, exon 1 of 9)	5' UTR (NM_001290676, exon 1 of 9)	487.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	143.59	167.26	120.24	151.81	158.15	110.12	160.54	166.7	115.54
Merged-chr1-152556863-3	chr1	152556339	152557339	+	979.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68378.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	71.51	74.65	61.97	76.24	35.92	67.52	50.7	49.08	59.33
Merged-chr8-107048414-5	chr8	107047958	107048958	+	979.085693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_139229)	TTS (NM_139229)	156.0	NM_026513	68023.0	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	41.19	27.65	55.5	46.56	35.92	86.81	34.85	36.7	34.97
Merged-chr2-6582937-3	chr2	6582422	6583422	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	ORR1E|LTR|ERVL-MaLR	138740.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	12.59	7.37	11.1	11.47	6.06	4.02	11.62	4.42	5.0
Merged-chr10-14959265-3	chr10	14958766	14959766	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198977.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	22.31	37.78	13.87	56.0	51.78	51.44	36.97	41.12	5.62
Merged-chr6-72355272-3	chr6	72354843	72355843	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144916)	promoter-TSS (NM_144916)	-140.0	NM_144916	232086.0	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	33.18	13.82	14.8	35.76	19.59	14.47	35.91	15.03	13.74
Merged-chr2-52862121-3	chr2	52861614	52862614	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	4246.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	44.05	41.93	46.25	60.72	38.72	31.35	34.85	50.85	28.73
Merged-chr10-79927002-3	chr10	79926493	79927493	+	979.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-50.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	82.38	68.66	74.0	76.24	74.64	109.32	101.39	136.63	77.44
Merged-chr9-104663664-2	chr9	104663163	104664163	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	94180.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	16.59	14.75	5.55	39.13	17.26	24.11	1.06	3.1	1.25
Merged-chr16-76217877-1	chr16	76217377	76218377	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	95264.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	55.49	26.26	45.32	57.35	23.33	39.39	52.81	28.74	54.33
Merged-chr12-17764245-1	chr12	17763745	17764745	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	73436.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.44	9.22	28.67	12.14	11.2	19.29	12.67	15.03	14.36
Merged-chr14-70931135-1	chr14	70930635	70931635	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	41028.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	6.29	9.22	13.87	12.14	7.0	19.29	9.51	5.75	6.87
Merged-chr6-131272503-3	chr6	131272010	131273010	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20734.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	44.05	52.07	34.22	45.88	43.85	44.21	51.75	39.8	31.23
Merged-chr7-16002388-3	chr7	16001915	16002915	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-2920.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	37.76	47.92	37.0	68.15	68.58	68.32	46.47	40.68	19.36
Merged-chr7-28373797-1	chr7	28373297	28374297	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1135.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	64.64	67.27	52.72	62.75	34.06	35.37	47.53	44.66	60.58
Merged-chr11-102434604-3	chr11	102434111	102435111	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008175, intron 7 of 12)	intron (NM_008175, intron 7 of 12)	4289.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	14.3	8.75	13.87	16.19	3.73	31.35	11.62	11.5	14.36
Merged-chr15-78810382-3	chr15	78809886	78810886	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-7344.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	11.44	9.22	13.87	6.07	4.2	0.0	3.17	3.1	3.75
Merged-chr2-10142859-1	chr2	10142359	10143359	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10684.0	NM_172471	209378.0	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.0	3.69	1.85	5.4	3.73	3.22	2.11	2.21	1.25
Merged-chr1-161500517-2	chr1	161500018	161501018	+	979.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 2 of 2)	intron (NM_183391, intron 2 of 2)	5861.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	92.1	111.51	103.59	126.85	79.77	86.01	119.35	105.24	71.2
Merged-chr15-53566427-3	chr15	53565924	53566924	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	UCON29|DNA|PiggyBac?	47855.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	18.31	30.41	14.8	30.36	10.73	12.86	25.35	17.24	17.49
Merged-chr11-83942136-3	chr11	83941683	83942683	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030096)	promoter-TSS (NM_030096)	93.0	NM_030096	78394.0	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	121.28	119.34	68.45	106.61	102.17	98.87	110.9	121.6	64.95
Merged-chr2-129572778-3	chr2	129572276	129573276	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20063.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	58.92	55.75	40.7	33.74	18.66	16.08	73.93	71.63	22.48
Merged-chr4-137866374-3	chr4	137865882	137866882	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	4145.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	21.74	9.22	12.95	23.62	14.0	10.45	4.22	7.07	5.62
Merged-chr5-147527972-3	chr5	147527470	147528470	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 11 of 18)	intron (NM_028291, intron 11 of 18)	97814.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	5.72	14.75	7.4	18.22	10.73	17.68	10.56	11.94	13.74
Merged-chr13-76018229-1	chr13	76017729	76018729	+	979.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_178916, exon 1 of 4)	5' UTR (NM_178916, exon 1 of 4)	333.0	NM_178916	218341.0	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	101.25	128.1	99.89	104.58	111.96	95.65	193.28	202.95	112.42
Merged-chr17-73095265-3	chr17	73094767	73095767	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12718.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	24.03	26.73	34.22	38.46	24.72	32.96	22.18	29.63	34.97
Merged-chr13-34278324-3	chr13	34277822	34278822	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66860.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	128.14	91.7	86.95	100.53	73.71	65.11	92.94	80.47	72.45
Merged-chr1-182960217-3	chr1	182959663	182960663	+	978.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	MIRb|SINE|MIR	5375.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	90.38	75.57	29.6	57.35	23.79	26.53	27.46	24.32	7.49
Merged-chr3-106684959-3	chr3	106684473	106685473	+	978.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039478)	promoter-TSS (NM_001039478)	-14.0	NM_001039478	321000.0	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	30.89	22.12	12.95	23.62	20.06	19.29	25.35	21.67	29.98
Merged-chr1-45880996-3	chr1	45880500	45881500	+	978.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	44594.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	131.57	175.1	98.05	190.27	129.22	152.72	164.76	157.85	116.79
Merged-chr18-79936829-2	chr18	79936293	79937293	+	978.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110102.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	36.04	31.33	20.35	32.39	25.19	36.97	6.34	1.33	4.37
Merged-chr6-50340830-2	chr6	50340320	50341320	+	978.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 9 of 21)	MTC|LTR|ERVL-MaLR	42017.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	8.01	6.45	8.32	0.0	0.93	3.22	5.28	3.54	1.25
Merged-chr13-65019483-3	chr13	65018992	65019992	+	978.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13566.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	36.61	52.99	22.2	51.95	30.79	32.96	58.09	68.54	13.74
Merged-chr3-21955856-3	chr3	21955370	21956370	+	978.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120782.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	37.76	52.53	42.55	38.46	50.38	62.7	45.42	32.72	43.72
Merged-chr2-35327089-3	chr2	35326570	35327570	+	978.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9939.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	63.5	108.75	123.94	105.93	104.96	94.04	97.17	108.33	58.08
Merged-chr13-56197694-3	chr13	56197185	56198185	+	978.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18800.0	NM_001168615	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	2.29	2.76	1.85	2.7	3.27	4.82	3.17	2.21	8.74
Merged-chr15-12010593-3	chr15	12010085	12011085	+	978.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14578.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	11.44	11.06	11.1	8.1	11.66	4.82	10.56	7.07	0.0
Merged-chr15-96593283-3	chr15	96592850	96593850	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	48612.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	80.09	74.19	68.45	32.39	14.0	9.65	44.36	38.47	28.1
Merged-chr7-44351455-3	chr7	44350946	44351946	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 23 of 24)	intron (NM_001034115, intron 23 of 24)	23584.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	2.86	4.61	1.85	0.67	0.93	0.0	2.11	9.29	0.0
Merged-chr10-78063332-3	chr10	78062833	78063833	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001284199, exon 6 of 6)	exon (NM_001284199, exon 6 of 6)	-6035.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	2.86	5.99	1.85	6.75	0.47	4.82	3.17	2.21	9.37
Merged-chr11-35827919-3	chr11	35827397	35828397	+	978.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025936, intron 3 of 14)	intron (NM_025936, intron 3 of 14)	6631.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	16.02	9.68	11.1	13.49	7.46	15.27	26.4	14.59	29.98
Merged-chr16-17012774-3	chr16	17012246	17013246	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	intron (NM_001038663, intron 1 of 7)	29364.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	41.19	30.87	37.0	33.74	21.93	23.31	17.96	20.34	29.35
Merged-chr3-106560269-3	chr3	106559766	106560766	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	MTA_Mm|LTR|ERVL-MaLR	-12464.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	32.61	30.87	58.27	45.88	20.53	53.05	38.02	45.54	38.72
Merged-chr10-81389577-3	chr10	81389084	81390084	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3237.0	NR_105878	102466763.0		NR_105878	ENSMUSG00000098811	Mir6913	Gm27788|mmu-mir-6913	microRNA 6913	ncRNA	38.33	31.79	37.92	43.18	34.52	42.6	74.99	60.58	21.23
Merged-chr5-125521366-3	chr5	125520850	125521850	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11068.0	NM_001190352	208151.0	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	9.15	11.52	14.8	14.17	14.46	4.82	10.56	7.52	3.75
Merged-chr7-12909681-3	chr7	12909149	12910149	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001447)	TTS (NM_001001447)	11840.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	29.75	29.03	38.85	45.21	21.93	61.89	45.42	44.66	70.57
Merged-chr1-165642001-3	chr1	165641497	165642497	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7456.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	193.93	205.05	116.54	194.99	187.07	161.56	184.83	243.63	111.17
Merged-chr7-80652502-3	chr7	80651991	80652991	+	978.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	16474.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	64.07	47.46	20.35	24.96	29.86	52.25	36.97	34.49	46.84
Merged-chr19-37436644-3	chr19	37436127	37437127	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	intron (NM_008245, intron 1 of 3)	1786.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	52.06	50.69	60.12	39.81	52.72	70.73	54.92	44.22	34.97
Merged-chr7-143686317-3	chr7	143685815	143686815	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024290)	promoter-TSS (NM_024290)	-440.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	48.62	58.52	29.6	49.25	50.38	57.07	45.42	38.03	46.84
Merged-chr5-123080303-3	chr5	123079792	123080792	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039723, intron 1 of 11)	intron (NM_001039723, intron 1 of 11)	4017.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	99.54	82.48	44.4	75.57	76.04	58.68	41.19	64.56	34.97
Merged-chr5-20864759-3	chr5	20864253	20865253	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	17371.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	57.78	68.2	81.4	53.3	76.04	43.4	87.66	79.59	52.46
Merged-chr15-84856179-3	chr15	84855680	84856680	+	978.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081166)	promoter-TSS (NM_001081166)	-51.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	24.6	15.21	17.57	20.92	16.79	33.76	40.14	22.11	24.98
Merged-chr10-117363264-3	chr10	117362768	117363768	+	978.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 3 of 9)	B2_Mm2|SINE|B2	13705.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	14.3	18.43	17.57	14.84	12.13	20.09	12.67	12.38	7.49
Merged-chr13-45267566-3	chr13	45267072	45268072	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-122170.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	208.23	197.68	141.52	209.84	193.13	110.92	158.43	146.36	84.31
Merged-chr12-32709580-3	chr12	32709089	32710089	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110746.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	38.33	60.82	48.1	62.07	59.71	68.32	50.7	44.66	44.34
Merged-chr10-60260306-3	chr10	60259811	60260811	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17317.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	152.17	124.41	110.07	144.39	103.1	147.9	246.09	184.83	99.92
Merged-chr14-30607875-3	chr14	30607370	30608370	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 3 of 17)	intron (NM_011103, intron 3 of 17)	2440.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	11.44	8.75	9.25	19.57	14.0	12.86	30.63	20.78	13.12
Merged-chr19-3936610-3	chr19	3936112	3937112	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019449, intron 3 of 10)	intron (NM_019449, intron 3 of 10)	1426.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	185.92	108.28	124.87	126.85	82.57	138.25	138.36	164.93	87.43
Merged-chr4-121214663-3	chr4	121214137	121215137	+	978.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	447.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	230.54	245.6	167.42	230.75	225.32	136.64	183.78	153.43	109.29
Merged-chr8-40610431-2	chr8	40609922	40610922	+	978.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 1 of 13)	B3A|SINE|B2	24370.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.15	2.3	0.0	2.7	3.73	0.0	115.12	131.77	74.32
Merged-chr8-54562346-2	chr8	54561848	54562848	+	978.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029569, intron 1 of 6)	intron (NM_029569, intron 1 of 6)	12017.0	NM_029569	76294.0	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	6.29	6.45	1.85	6.07	9.33	4.82	8.45	9.29	11.24
Merged-chr12-79190970-3	chr12	79190462	79191462	+	978.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362269)	promoter-TSS (NM_001362269)	-1.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	14.87	17.51	7.4	32.39	22.86	27.33	28.52	14.15	21.23
Merged-chr6-33835430-3	chr6	33834916	33835916	+	978.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 12 of 17)	intron (NM_009148, intron 12 of 17)	-194032.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	123.56	106.9	69.37	99.18	74.17	112.53	120.41	150.78	90.56
Merged-chr13-34314222-3	chr13	34313735	34314735	+	978.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	30947.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	56.06	86.17	67.52	64.1	59.25	82.79	47.53	56.16	33.1
Merged-chr16-76530997-3	chr16	76530499	76531499	+	978.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17796.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	17.16	11.52	1.85	13.49	11.66	16.08	9.51	13.27	13.74
Merged-chr2-27075687-2	chr2	27075176	27076176	+	978.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3515.0	NM_025376	66139.0	Mm.330087	NM_025376	ENSMUSG00000009214	Mymk	1110002H13Rik|AI131587|Tmem8c|myomaker	myomaker, myoblast fusion factor	protein-coding	2.86	9.22	3.7	2.7	3.27	1.61	1.06	0.88	3.75
Merged-chr10-39420040-3	chr10	39419545	39420545	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	50246.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	90.38	71.88	55.5	128.2	80.24	78.77	115.12	115.85	42.47
Merged-chr17-31905950-3	chr17	31905466	31906466	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50162.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	13.73	16.59	14.8	18.22	7.0	27.33	16.9	1.77	2.5
Merged-chr6-28880931-4	chr6	28880428	28881428	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-49181.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	22.88	12.44	22.2	18.22	12.6	8.04	6.34	6.63	9.99
Merged-chr6-28215427-4	chr6	28214972	28215972	+	978.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46129.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	16.02	9.22	1.85	15.52	2.8	3.22	21.12	12.38	5.0
Merged-chr6-115838490-3	chr6	115838009	115839009	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110506)	promoter-TSS (NM_001110506)	-97.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	14.87	16.59	18.5	21.59	18.66	34.56	20.07	15.48	13.74
Merged-chr8-105996498-3	chr8	105995981	105996981	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176913)	promoter-TSS (NM_176913)	-58.0	NM_176913	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	14.3	14.28	11.1	35.09	18.19	25.72	13.73	10.17	7.49
Merged-chr8-83662543-3	chr8	83662033	83663033	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 4 of 6)	intron (NM_018771, intron 4 of 6)	-4111.0	NM_013641	19216.0	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	13.16	8.29	11.1	12.82	7.0	6.43	5.28	3.54	9.99
Merged-chr3-89270539-3	chr3	89270038	89271038	+	978.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009057)	promoter-TSS (NM_009057)	32.0	NM_009057	19729.0	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	24.03	24.88	43.47	41.16	27.52	43.4	36.97	21.22	46.22
Merged-chr16-87716527-3	chr16	87716030	87717030	+	978.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 2 of 4)	intron (NM_007520, intron 2 of 4)	17576.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	26.31	29.49	26.82	25.64	18.66	33.76	39.08	26.53	32.48
Merged-chr18-66436785-3	chr18	66436272	66437272	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21832.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	59.49	28.57	21.27	67.47	35.45	26.53	52.81	56.6	21.23
Merged-chr1-171887289-3	chr1	171886785	171887785	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 8 of 8)	intron (NM_001289470, intron 8 of 8)	-30177.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	36.61	47.92	44.4	36.43	21.93	57.87	84.49	95.07	53.71
Merged-chr17-34606469-3	chr17	34605999	34606999	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163379, intron 1 of 6)	intron (NM_001163379, intron 1 of 6)	638.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	78.94	42.85	40.7	76.24	44.32	69.13	60.2	42.45	46.22
Merged-chr2-4457897-3	chr2	4457392	4458392	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	56916.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	24.03	14.75	0.0	12.14	5.13	7.23	61.26	52.18	13.12
Merged-chr7-99432510-1	chr7	99432010	99433010	+	978.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	MIR|SINE|MIR	-33494.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	5.72	7.83	5.55	14.17	4.67	7.23	5.28	6.63	6.25
Merged-chr18-6774848-3	chr18	6774330	6775330	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181070, intron 2 of 6)	intron (NM_181070, intron 2 of 6)	9663.0	NM_001278447	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	8.58	14.28	9.25	8.1	6.53	6.43	9.51	8.4	8.74
Merged-chr18-60638426-3	chr18	60637928	60638928	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14123.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	11.44	9.22	5.55	17.54	9.8	6.43	4.22	14.15	1.87
Merged-chr4-46575022-3	chr4	46574534	46575534	+	978.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	-8594.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	18.88	24.88	24.05	28.34	16.79	31.35	64.43	88.88	48.71
Merged-chr17-84083603-5	chr17	84083092	84084092	+	978.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	4932.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	228.82	157.13	190.54	182.17	128.76	127.8	311.57	334.72	163.0
Merged-chr12-80807560-3	chr12	80807064	80808064	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	17032.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	48.62	35.02	34.22	31.71	23.79	40.19	55.98	42.01	48.09
Merged-chr7-120851727-3	chr7	120851220	120852220	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267711, intron 1 of 17)	intron (NM_001267711, intron 1 of 17)	531.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	48.62	47.92	56.42	53.3	49.92	32.96	29.57	17.24	23.73
Merged-chr18-36454493-3	chr18	36453976	36454976	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026027)	promoter-TSS (NM_026027)	19.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	89.81	71.42	65.67	95.14	72.78	65.11	105.62	80.47	43.72
Merged-chr7-101540900-3	chr7	101540402	101541402	+	978.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14900.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	133.86	86.63	59.2	134.27	93.3	60.28	27.46	29.63	14.36
Merged-chr17-73972465-2	chr17	73971936	73972936	+	978.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22240.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	24.03	27.65	11.1	23.62	58.31	36.17	68.65	101.7	51.84
Merged-chr16-20716311-3	chr16	20715802	20716802	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009900, exon 1 of 24)	5' UTR (NM_009900, exon 1 of 24)	334.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	6.29	2.76	4.62	20.24	7.0	3.22	12.67	5.75	4.37
Merged-chr6-97447196-3	chr6	97446686	97447686	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	12100.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	88.67	113.35	72.15	96.48	78.37	110.92	106.67	122.04	84.94
Merged-chr18-4287993-3	chr18	4287492	4288492	+	978.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64961.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	13.73	10.14	6.47	15.52	17.26	29.74	21.12	11.05	5.0
Merged-chr15-99001699-2	chr15	99001187	99002187	+	978.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15722.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	1.14	0.0	0.0	40.48	29.86	55.46	45.42	49.52	29.98
Merged-chr13-39923342-2	chr13	39922842	39923842	+	978.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	364669.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	1.14	2.76	1.85	4.05	7.93	0.0	10.56	3.98	6.25
Merged-chr18-60813660-2	chr18	60813294	60814294	+	978.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198984)	TTS (NM_001198984)	1718.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	11.44	11.52	34.22	5.4	5.6	11.25	4.22	8.84	11.87
Merged-chr13-41074045-3	chr13	41073528	41074528	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3563.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	63.5	52.07	23.12	79.62	84.9	56.27	85.55	91.97	38.1
Merged-chr3-100641309-3	chr3	100640799	100641799	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010763, intron 5 of 12)	intron (NM_010763, intron 5 of 12)	44174.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	13.16	9.68	17.57	12.82	7.93	11.25	6.34	9.73	13.12
Merged-chr12-111696522-3	chr12	111696016	111697016	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16437.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	6.29	4.15	0.0	14.84	14.0	16.88	17.96	15.92	16.86
Merged-chr11-119711015-3	chr11	119710515	119711515	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	108110.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	21.74	16.59	11.1	21.59	9.33	12.86	22.18	10.17	9.99
Merged-chr10-115343234-3	chr10	115342748	115343748	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359472, intron 6 of 6)	intron (NM_001359472, intron 6 of 6)	19001.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	15.45	10.6	18.5	12.82	8.4	8.84	4.22	9.73	7.49
Merged-chr7-19072315-3	chr7	19071828	19072828	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031255, intron 5 of 5)	B1F|SINE|Alu	-3872.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	8.58	9.22	11.1	15.52	4.2	6.43	25.35	24.32	14.99
Merged-chr3-89912451-3	chr3	89911920	89912920	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	776.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	279.73	313.33	191.47	238.18	251.45	177.64	209.12	249.38	179.24
Merged-chr1-176813601-3	chr1	176813122	176814122	+	978.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1038.0	NR_151682	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	282.59	199.98	183.14	238.85	171.21	155.13	231.3	214.89	124.28
Merged-chr1-127206356-5	chr1	127205866	127206866	+	978.293335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	1380.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	66.36	73.26	55.5	64.77	66.24	41.8	94.0	88.88	47.46
Merged-chr5-135463602-3	chr5	135463113	135464113	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-69067.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	89.81	89.39	90.65	93.79	80.24	77.97	96.11	82.24	68.7
Merged-chr15-62055170-3	chr15	62054668	62055668	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	L2c|LINE|L2	15911.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	86.38	83.4	76.77	87.71	78.37	76.36	73.93	96.39	62.45
Merged-chr15-78573229-3	chr15	78572742	78573742	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009008)	promoter-TSS (NM_009008)	-459.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	155.6	110.59	83.25	160.58	109.63	57.07	170.05	138.4	61.83
Merged-chr2-122154111-3	chr2	122153626	122154626	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	6439.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	25.17	21.66	18.5	19.57	20.53	33.76	30.63	23.43	35.6
Merged-chr15-53644218-3	chr15	53643723	53644723	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	B3A|SINE|B2	-29944.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	14.3	11.06	10.17	12.82	7.46	14.47	10.56	5.31	6.25
Merged-chr11-101253793-3	chr11	101253305	101254305	+	978.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284414)	promoter-TSS (NM_001284414)	98.0	NM_026776	28084.0	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	57.21	58.06	87.87	64.77	59.71	78.77	101.39	88.43	48.09
Merged-chr9-65435805-3	chr9	65435305	65436305	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027134)	promoter-TSS (NM_027134)	23.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	19.45	11.98	22.2	25.64	15.86	8.84	22.18	14.59	5.62
Merged-chr13-9472882-3	chr13	9472385	9473385	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	196360.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	14.87	10.14	14.8	6.07	12.13	9.65	14.79	15.03	10.62
Merged-chr10-8766274-3	chr10	8765791	8766791	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	119779.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	40.62	47.0	28.67	64.1	36.85	28.94	33.8	27.86	4.37
Merged-chr2-103796594-3	chr2	103796110	103797110	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111292, intron 1 of 16)	CpG	468.0	NM_001111290	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	355.82	469.54	359.81	375.14	426.39	367.33	367.55	479.75	331.0
Merged-chr8-70869670-3	chr8	70869186	70870186	+	978.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026964, intron 2 of 4)	intron (NM_026964, intron 2 of 4)	3804.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	6.86	5.53	0.0	4.72	4.67	8.04	3.17	1.33	3.75
Merged-chr17-46892708-3	chr17	46892206	46893206	+	978.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178385)	TTS (NM_178385)	2085.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	58.35	43.77	30.52	106.61	75.11	51.44	64.43	59.69	22.48
Merged-chr6-83317597-3	chr6	83317065	83318065	+	978.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008638)	promoter-TSS (NM_008638)	39.0	NM_008638	17768.0	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	27.46	27.19	8.32	25.64	14.0	10.45	34.85	24.76	9.99
Merged-chr14-14869418-2	chr14	14868914	14869914	+	978.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195229, intron 21 of 34)	HAL1|LINE|L1	48599.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	28.03	41.93	30.52	12.82	13.53	6.43	6.34	4.42	3.75
Merged-chr3-137833312-3	chr3	137832804	137833804	+	978.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31183.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	9.15	5.99	0.0	9.45	4.67	14.47	10.56	6.19	10.62
Merged-chr8-117257417-4	chr8	117256918	117257918	+	978.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	399.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	284.88	343.28	281.19	257.07	303.23	291.78	299.96	324.11	244.19
Merged-chr10-127602758-3	chr10	127602253	127603253	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	18395.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	134.43	108.28	117.47	142.37	111.5	154.33	207.01	180.85	91.81
Merged-chr11-106429844-3	chr11	106429358	106430358	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 4 of 21)	intron (NM_023913, intron 4 of 21)	-47077.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	106.97	119.8	83.25	101.88	81.17	82.79	78.16	126.02	59.95
Merged-chr17-33947543-3	chr17	33947056	33948056	+	978.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020603, intron 10 of 14)	intron (NM_020603, intron 10 of 14)	3932.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	20.59	11.52	18.5	22.94	24.26	40.19	40.14	24.76	34.97
Merged-chr11-6522981-3	chr11	6522494	6523494	+	978.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2036.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	23.45	20.74	13.87	16.87	13.53	14.47	24.29	11.05	8.74
Merged-chrX-70365059-3	chrX	70364545	70365545	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010498)	promoter-TSS (NM_010498)	40.0	NM_010498	15931.0	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	24.03	33.64	9.25	24.96	19.13	13.66	22.18	15.03	12.49
Merged-chr3-69667551-3	chr3	69667052	69668052	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-54503.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	44.62	40.55	31.45	47.23	43.39	46.62	40.14	44.66	59.95
Merged-chr13-114964446-3	chr13	114963945	114964945	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 28 of 28)	intron (NM_001033228, intron 28 of 28)	-32345.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	1.72	1.84	1.85	2.7	4.2	1.61	1.06	2.65	2.5
Merged-chr16-52453208-3	chr16	52452712	52453712	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331110)	promoter-TSS (NM_001331110)	-131.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	1.72	2.3	3.7	9.45	3.27	4.82	5.28	0.88	9.99
Merged-chr19-40650285-3	chr19	40649794	40650794	+	978.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MC3|LINE|L1	-9476.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	37.18	41.47	33.3	38.46	30.79	37.78	26.4	28.74	21.23
Merged-chr9-61257725-3	chr9	61257219	61258219	+	978.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	36090.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	3.43	2.76	3.7	4.05	2.8	0.0	4.22	1.77	5.0
Merged-chr4-40364436-2	chr4	40363953	40364953	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51221.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	5.15	4.15	9.25	3.37	3.73	1.61	5.28	5.75	3.75
Merged-chr7-129531838-1	chr7	129531338	129532338	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-60025.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	1.14	2.3	3.7	4.05	6.53	6.43	5.28	1.77	9.99
Merged-chr7-26253582-3	chr7	26253084	26254084	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13247.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	14.3	16.13	23.12	18.89	16.33	17.68	20.07	14.59	20.61
Merged-chr17-87302133-1	chr17	87301633	87302633	+	978.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	19247.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	160.75	148.37	113.77	128.87	114.76	142.27	134.14	149.01	82.44
Merged-chr12-78227325-3	chr12	78226795	78227795	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 1 of 23)	CpG	640.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	82.95	77.87	88.8	101.21	83.04	87.61	106.67	126.9	79.94
Merged-chr7-121332875-1	chr7	121332375	121333375	+	978.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-59421.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	18.88	23.04	14.8	47.9	26.12	59.48	38.02	40.24	31.23
Merged-chr7-19921088-3	chr7	19920592	19921592	+	978.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	51.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	61.78	72.34	86.02	83.66	72.78	99.67	120.41	91.97	55.58
Merged-chr11-95042292-3	chr11	95041780	95042780	+	977.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133667)	promoter-TSS (NM_133667)	-909.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	13.16	17.05	12.02	22.94	12.6	33.76	36.97	20.34	28.1
Merged-chr7-34390923-3	chr7	34390424	34391424	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1219.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	24.6	43.77	17.57	20.92	26.12	37.78	32.74	36.7	22.48
Merged-chr4-63402749-3	chr4	63402227	63403227	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	718.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	316.35	255.27	229.39	273.94	195.47	229.88	316.86	282.99	191.11
Merged-chr14-32168403-3	chr14	32167903	32168903	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	2614.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	91.53	103.22	74.0	139.67	112.43	110.12	189.06	193.67	94.93
Merged-chr5-90900392-3	chr5	90899874	90900874	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3525.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	20.02	22.58	14.8	40.48	20.99	20.9	23.24	11.94	18.11
Merged-chr2-46245946-3	chr2	46245438	46246438	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	549333.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	27.46	43.77	22.2	26.31	34.06	37.78	38.02	30.51	31.85
Merged-chrX-38431356-3	chrX	38430854	38431854	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 5 of 9)	intron (NR_152733, intron 5 of 9)	25106.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	7.44	8.75	1.85	7.42	7.46	14.47	15.84	15.03	10.62
Merged-chr4-59452700-3	chr4	59452187	59453187	+	977.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-14054.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	100.68	92.62	63.82	74.22	63.91	56.27	53.87	54.39	21.23
Merged-chr11-3172699-5	chr11	3172169	3173169	+	977.919983	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mus1|SINE|Alu	20794.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	69.22	88.47	110.07	121.45	102.63	132.63	16.9	14.59	132.4
Merged-chr5-92503601-3	chr5	92503117	92504117	+	977.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	2040.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	192.78	156.21	96.2	153.84	130.62	150.31	133.08	114.52	98.05
Merged-chr2-68978834-3	chr2	68978334	68979334	+	977.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	intron (NM_001347161, intron 3 of 10)	117393.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	36.61	28.11	32.37	12.82	11.2	16.88	17.96	15.92	13.74
Merged-chr5-17885466-3	chr5	17884990	17885990	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	3469.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	9.15	5.53	5.55	18.22	8.4	4.02	9.51	12.38	8.12
Merged-chr14-55677702-3	chr14	55677185	55678185	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177992, intron 8 of 9)	intron (NM_177992, intron 8 of 9)	4132.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	42.9	42.39	37.0	26.99	32.19	31.35	14.79	46.87	27.48
Merged-chr5-149274771-6	chr5	149274287	149275287	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308462, intron 2 of 3)	MT2B|LTR|ERVL	9783.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	74.37	66.81	61.05	61.4	57.38	81.99	60.2	58.81	34.35
Merged-chr2-127587285-3	chr2	127586809	127587809	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029963)	promoter-TSS (NM_029963)	-117.0	NM_029963	77721.0	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	47.48	35.48	28.67	37.78	42.45	64.3	43.3	39.8	32.48
Merged-chr1-171845193-3	chr1	171844702	171845702	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	5505.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	148.16	132.71	72.15	193.64	121.76	111.73	181.66	164.04	96.18
Merged-chrX-106143182-3	chrX	106142667	106143667	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_205820)	promoter-TSS (NM_205820)	-108.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	70.93	77.41	35.15	82.99	70.91	52.25	68.65	84.01	39.97
Merged-chr1-36162860-3	chr1	36162361	36163361	+	977.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198899, intron 29 of 40)	intron (NM_198899, intron 29 of 40)	-18548.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	11.44	7.37	3.7	25.64	16.33	16.08	15.84	24.76	11.87
Merged-chr17-84074199-3	chr17	84073710	84074710	+	977.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4450.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	43.48	49.3	49.95	41.83	41.52	41.8	36.97	35.82	57.46
Merged-chr14-45080018-3	chr14	45079517	45080517	+	977.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	91906.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	22.31	13.82	9.25	12.82	7.46	12.06	10.56	7.96	11.24
Merged-chr12-70457243-3	chr12	70456727	70457727	+	977.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028339, intron 3 of 7)	intron (NM_028339, intron 3 of 7)	4073.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	38.33	50.23	19.42	50.6	42.92	39.39	65.48	73.4	48.71
Merged-chr18-61400052-7	chr18	61399563	61400563	+	977.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	CpG	368.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	70.93	71.88	89.72	93.11	74.17	100.47	99.28	53.06	46.84
Merged-chr4-95212761-3	chr4	95212248	95213248	+	977.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-160526.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	66.93	32.72	10.17	86.36	64.38	17.68	28.52	18.57	7.49
Merged-chr5-77267245-3	chr5	77266737	77267737	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011263, intron 1 of 3)	intron (NM_011263, intron 1 of 3)	1743.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	30.32	32.25	43.47	34.41	40.12	49.83	55.98	40.68	36.22
Merged-chr2-131530746-3	chr2	131530243	131531243	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31542.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	5.72	7.37	0.92	3.37	4.2	4.02	4.22	4.86	8.12
Merged-chr4-147848436-3	chr4	147847937	147848937	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355730)	promoter-TSS (NM_001355730)	-19.0	NM_198619	242747.0	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	63.5	95.38	30.52	56.0	84.9	50.64	89.78	94.18	41.84
Merged-chr15-7217211-3	chr15	7216709	7217709	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289496, intron 20 of 22)	intron (NM_001289496, intron 20 of 22)	76667.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	1.14	2.3	1.85	1.35	1.4	0.0	1.06	0.44	0.0
Merged-chr2-133443694-3	chr2	133443178	133444178	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108481.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	13.16	7.37	9.25	19.57	11.2	14.47	8.45	3.54	8.74
Merged-chr11-117775742-3	chr11	117775243	117776243	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_154387, exon 6 of 19)	non-coding (NR_154387, exon 6 of 19)	3905.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	64.07	34.1	18.5	53.3	69.04	52.25	57.03	34.05	18.74
Merged-chr10-39459008-3	chr10	39458511	39459511	+	977.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	89212.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	8.58	4.15	1.85	10.12	6.53	6.43	9.51	9.29	9.99
Merged-chr11-75092305-3	chr11	75091802	75092802	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-26311.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	34.9	42.39	20.35	45.88	36.85	38.58	27.46	31.84	10.62
Merged-chr15-27919709-3	chr15	27919214	27920214	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	106134.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.43	3.23	0.0	2.7	3.73	0.0	2.11	0.88	3.75
Merged-chr17-4922820-3	chr17	4922311	4923311	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72263.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	22.31	11.06	3.7	13.49	9.8	16.08	10.56	15.03	12.49
Merged-chr2-168978255-3	chr2	168977752	168978752	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040326)	promoter-TSS (NR_040326)	-17.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	18.88	7.83	20.35	33.74	13.06	8.84	20.07	18.57	8.74
Merged-chr13-109776294-3	chr13	109775765	109776765	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-127544.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	4.58	3.23	5.55	5.4	2.33	5.63	5.28	6.63	2.5
Merged-chr6-140811150-3	chr6	140810650	140811650	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	184265.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.44	4.61	12.95	6.75	4.67	8.04	4.22	5.31	10.62
Merged-chr5-76132237-3	chr5	76131742	76132742	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8031.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	42.33	38.25	44.4	11.47	13.53	8.04	4.22	7.96	6.25
Merged-chr15-98761311-3	chr15	98760802	98761802	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	1690.0	NM_001355510	11842.0	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	80.09	75.11	63.82	54.65	38.25	57.87	57.03	65.88	31.23
Merged-chr16-49939081-3	chr16	49938586	49939586	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16744.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	6.29	5.99	0.0	4.05	7.93	1.61	7.39	3.54	7.49
Merged-chr12-85523281-3	chr12	85522759	85523759	+	977.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49369.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	283.74	222.56	169.27	318.47	248.18	217.83	199.62	212.68	158.63
Merged-chr5-74792511-2	chr5	74792019	74793019	+	977.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89616.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	15.45	7.37	12.02	39.13	17.26	42.6	7.39	2.21	5.62
Merged-chr5-114127619-3	chr5	114127108	114128108	+	977.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359940, exon 2 of 4)	exon (NM_001359940, exon 2 of 4)	610.0	NM_001359940	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	63.5	52.53	51.8	58.03	95.17	87.61	116.18	133.98	56.21
Merged-chr19-47918683-3	chr19	47918189	47919189	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	610.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	185.35	176.02	98.97	201.74	167.01	183.26	100.34	100.37	58.71
Merged-chr3-41563357-3	chr3	41562833	41563833	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172303)	promoter-TSS (NM_172303)	-50.0	NM_172303	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	41.19	37.78	37.0	45.21	35.45	26.53	40.14	28.3	26.23
Merged-chr8-81375320-3	chr8	81374816	81375816	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	32754.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	22.88	23.96	24.97	18.22	13.53	18.49	4.22	9.29	8.12
Merged-chr16-93683169-3	chr16	93682647	93683647	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173047)	promoter-TSS (NM_173047)	-72.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	34.9	33.64	23.12	48.58	48.05	65.11	44.36	34.49	31.23
Merged-chr17-88442053-3	chr17	88441549	88442549	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	intron (NM_001355742, intron 1 of 5)	1345.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	77.23	98.61	74.0	70.17	88.64	102.08	123.57	95.51	53.08
Merged-chrX-12948325-3	chrX	12947830	12948830	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11457.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	5.72	3.69	3.7	7.42	2.8	12.06	1.06	1.33	2.5
Merged-chr12-32818358-3	chr12	32817855	32818855	+	977.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1980.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	16.59	23.04	13.87	22.27	16.79	26.53	13.73	16.8	2.5
Merged-chr19-59042881-3	chr19	59042380	59043380	+	977.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 3 of 16)	intron (NM_001114312, intron 3 of 16)	33189.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	65.79	51.61	29.6	47.23	56.45	29.74	49.64	67.65	19.98
Merged-chr12-117379289-2	chr12	117378801	117379801	+	977.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42289.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	97.82	104.14	91.57	16.87	11.2	14.47	4.22	3.54	9.99
Merged-chr11-37043371-2	chr11	37042873	37043873	+	977.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99132.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	16.02	8.29	0.0	31.71	22.86	25.72	52.81	47.75	18.11
Merged-chr11-100343804-3	chr11	100343318	100344318	+	977.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	9411.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	237.4	228.55	137.82	280.68	202.46	188.89	218.63	308.63	116.79
Merged-chr2-91361430-3	chr2	91360938	91361938	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	83276.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	30.89	24.42	12.95	37.78	15.39	39.39	23.24	17.24	16.24
Merged-chr18-23874264-3	chr18	23873776	23874776	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70306.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	44.62	42.85	30.52	235.48	161.41	95.65	193.28	195.44	70.57
Merged-chr6-124682411-3	chr6	124681921	124682921	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	(A)n|Simple_repeat|Simple_repeat	19317.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	22.88	14.75	21.27	20.92	13.06	24.11	17.96	20.34	9.99
Merged-chr5-117357210-3	chr5	117356697	117357697	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-108.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	208.23	140.54	160.94	230.75	154.88	127.0	219.69	125.58	116.16
Merged-chr13-55024407-3	chr13	55023905	55024905	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3020.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	57.21	47.46	38.85	53.3	30.32	45.82	64.43	92.86	67.45
Merged-chr16-92019531-3	chr16	92019023	92020023	+	977.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-38799.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	42.33	52.53	41.62	52.63	60.18	94.04	58.09	82.24	48.71
Merged-chr17-35065040-3	chr17	35064525	35065525	+	977.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001462, exon 1 of 1)	non-coding (NR_001462, exon 1 of 1)	588.0	NR_001462	114763.0	Mm.491064	NR_001462		G6bos	G6b|NG31	G6b opposite strand	ncRNA	12.59	10.14	10.17	15.52	9.8	16.88	14.79	7.07	6.25
Merged-chr6-128843773-3	chr6	128843262	128844262	+	977.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17447.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	75.51	70.04	81.4	89.74	64.84	72.34	64.43	97.72	59.33
Merged-chr9-123840507-3	chr9	123840001	123841001	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 3 of 17)	intron (NM_001110253, intron 3 of 17)	11160.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	26.31	14.75	20.35	8.77	18.66	41.8	22.18	22.11	21.23
Merged-chr16-14109874-3	chr16	14109362	14110362	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081154, exon 27 of 27)	3' UTR (NM_001081154, exon 27 of 27)	49412.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	20.59	16.13	16.65	15.52	17.73	12.06	20.07	7.52	21.86
Merged-chr14-56885447-3	chr14	56884954	56885954	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1149.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	125.85	117.5	76.77	89.74	83.51	86.01	121.46	111.87	67.45
Merged-chr12-83703363-3	chr12	83702869	83703869	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362271, intron 3 of 11)	L1ME2|LINE|L1	14806.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	53.77	60.36	32.37	60.05	64.38	46.62	97.17	112.31	49.96
Merged-chr15-27702402-3	chr15	27701895	27702895	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20853.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	96.68	70.5	49.95	89.06	87.24	65.11	58.09	76.49	49.96
Merged-chr12-110854986-2	chr12	110854487	110855487	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	4708.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	13.16	4.15	7.4	91.76	61.58	63.5	76.05	61.9	36.22
Merged-chr7-27577816-3	chr7	27577304	27578304	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175107, intron 8 of 9)	MTC|LTR|ERVL-MaLR	-13748.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	45.76	47.92	49.02	36.43	20.99	32.96	117.24	152.99	69.32
Merged-chr12-25091973-2	chr12	25091490	25092490	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	4102.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	25.17	12.44	8.32	13.49	6.53	4.02	3.17	1.77	3.75
Merged-chr16-27388415-3	chr16	27387919	27388919	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026202)	promoter-TSS (NM_026202)	-537.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	213.95	255.27	184.99	232.78	152.55	168.8	185.89	227.72	163.63
Merged-chr2-71662162-3	chr2	71661632	71662632	+	977.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-57285.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	54.35	36.86	45.32	58.03	36.39	48.23	66.54	87.99	42.47
Merged-chr5-95923015-1	chr5	95922515	95923515	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-33924.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.58	9.22	12.02	10.8	5.13	8.84	7.39	4.42	2.5
Merged-chr1-151264982-1	chr1	151264482	151265482	+	977.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79504.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	6.29	6.91	3.7	14.84	3.27	14.47	4.22	3.54	6.25
Merged-chr5-119058574-4	chr5	119058102	119059102	+	977.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49634.0	NR_040693	73477.0	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	31.46	58.06	48.1	51.95	63.91	49.03	50.7	45.1	53.08
Merged-chr4-135267137-3	chr4	135266643	135267643	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	5617.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	38.33	21.66	34.22	12.14	16.33	24.11	15.84	7.07	5.0
Merged-chr8-115420615-3	chr8	115420123	115421123	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286271.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	51.48	48.38	37.92	45.88	19.59	24.11	29.57	32.72	26.85
Merged-chr16-10486950-3	chr16	10486448	10487448	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243760, intron 1 of 18)	intron (NM_001243760, intron 1 of 18)	-1230.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	29.75	25.8	26.82	13.49	12.13	24.11	42.25	43.33	17.49
Merged-chr8-56293430-3	chr8	56292943	56293943	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	78.94	127.64	89.72	107.95	89.57	94.04	108.79	157.41	75.57
Merged-chr5-139286192-3	chr5	139285682	139286682	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32685.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	192.21	213.34	215.51	207.81	188.94	230.69	200.68	240.1	140.52
Merged-chr4-135240509-3	chr4	135239996	135240996	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	32264.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	48.62	21.2	19.42	74.22	34.52	37.78	46.47	25.2	26.85
Merged-chr7-15967484-3	chr7	15966959	15967959	+	977.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153068)	promoter-TSS (NM_153068)	76.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	4.58	1.84	0.92	2.02	0.0	1.61	1.06	2.65	4.37
Merged-chr7-111015106-3	chr7	111014610	111015610	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13841.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	2.86	2.76	0.0	8.77	2.33	1.61	3.17	3.1	4.37
Merged-chr10-128037025-3	chr10	128036516	128037516	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282976, intron 2 of 7)	intron (NM_001282976, intron 2 of 7)	1670.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	88.67	63.13	43.47	99.86	67.64	49.83	97.17	78.26	31.23
Merged-chr8-105254299-3	chr8	105253812	105254812	+	977.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271915, exon 1 of 1)	exon (NM_001271915, exon 1 of 1)	841.0	NM_001271915	97440.0	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	6.86	7.37	1.85	20.24	6.06	6.43	4.22	4.42	5.0
Merged-chr18-53249732-3	chr18	53249202	53250202	+	977.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	4040.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	226.53	186.16	188.69	236.83	167.48	215.42	252.43	270.16	141.14
Merged-chr11-94226223-2	chr11	94225736	94226736	+	977.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14782.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.58	2.76	3.7	7.42	1.4	0.0	4.22	1.77	0.0
Merged-chr5-135907077-3	chr5	135906592	135907592	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	19173.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	60.64	56.22	40.7	159.91	120.83	109.32	78.16	62.79	29.35
Merged-chr15-39611086-3	chr15	39610581	39611581	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-48430.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	29.75	18.89	0.0	41.83	20.99	17.68	50.7	22.99	14.99
Merged-chr7-98084844-3	chr7	98084322	98085322	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 16 of 48)	intron (NM_008663, intron 16 of 48)	24426.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	124.14	110.13	106.37	111.33	139.95	117.35	153.15	165.37	73.07
Merged-chr14-65328142-3	chr14	65327641	65328641	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30535.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	5.15	7.37	3.7	4.72	3.27	1.61	7.39	3.54	3.12
Merged-chr3-121163632-1	chr3	121163132	121164132	+	977.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028456, intron 1 of 4)	intron (NM_028456, intron 1 of 4)	8063.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	2.86	0.46	3.7	2.7	3.27	3.22	5.28	3.98	5.62
Merged-chr16-38476432-3	chr16	38475953	38476953	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	17520.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	127.0	105.52	82.32	170.7	135.75	111.73	90.83	104.35	54.96
Merged-chr6-54048972-3	chr6	54048485	54049485	+	977.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	9053.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	21.17	11.06	14.8	20.92	13.06	16.88	13.73	18.13	8.12
Merged-chr10-96829043-1	chr10	96828543	96829543	+	977.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206725.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	1.14	3.23	0.0	4.72	2.33	4.02	2.11	4.42	3.75
Merged-chr10-82974421-3	chr10	82973909	82974909	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-11088.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	6.86	5.07	3.7	12.14	5.13	4.82	4.22	1.33	1.25
Merged-chr2-166900981-3	chr2	166900486	166901486	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	29.75	40.09	22.2	41.16	20.53	46.62	52.81	53.06	44.97
Merged-chr19-45308138-3	chr19	45307626	45308626	+	977.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55608.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	5.15	5.07	3.7	5.4	1.87	4.82	3.17	1.33	1.25
Merged-chr4-97839702-3	chr4	97839205	97840205	+	977.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	62079.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	18.31	14.75	17.57	10.8	12.6	16.88	8.45	5.31	15.61
Merged-chr12-76376878-3	chr12	76376362	76377362	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	6596.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	28.03	23.96	30.52	31.04	16.33	20.9	60.2	47.31	55.58
Merged-chr3-53459697-3	chr3	53459207	53460207	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172501, intron 3 of 6)	intron (NM_172501, intron 3 of 6)	3551.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	224.25	202.28	117.47	156.53	151.15	137.45	194.34	179.08	117.41
Merged-chr10-80180146-3	chr10	80179614	80180614	+	977.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007909, intron 1 of 3)	intron (NM_007909, intron 1 of 3)	632.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	12.01	2.3	3.7	5.4	3.73	6.43	5.28	4.86	5.0
Merged-chr11-80355015-3	chr11	80354494	80355494	+	977.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139228, exon 9 of 9)	3' UTR (NM_139228, exon 9 of 9)	23021.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	12.59	7.37	18.5	4.05	6.06	1.61	2.11	3.1	2.5
Merged-chr6-35380069-3	chr6	35379580	35380580	+	977.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49234.0	NR_040526	73409.0	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	2.29	3.23	1.85	2.02	4.67	8.04	2.11	0.88	4.37
Merged-chr5-88675483-5	chr5	88674981	88675981	+	977.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098476)	promoter-TSS (NM_001098476)	99.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	124.14	62.21	65.67	136.97	71.38	75.56	103.51	50.41	28.73
Merged-chr11-120437589-3	chr11	120437082	120438082	+	977.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001195023, exon 1 of 17)	5' UTR (NM_001195023, exon 1 of 17)	118.0	NM_001195023	217365.0	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	159.03	135.93	129.49	188.25	88.17	106.9	129.91	86.66	99.3
Merged-chr12-110850404-5	chr12	110849928	110850928	+	977.1749880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199785, exon 1 of 7)	exon (NM_001199785, exon 1 of 7)	149.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	235.69	126.72	151.69	301.6	159.55	154.33	219.69	138.4	124.28
Merged-chr11-75429197-3	chr11	75428701	75429701	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6578.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	18.88	25.8	23.12	24.29	19.13	27.33	23.24	20.34	18.11
Merged-chr5-110385489-3	chr5	110385000	110386000	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 5 of 18)	intron (NM_001142642, intron 5 of 18)	1627.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	24.6	31.79	27.75	17.54	5.13	19.29	38.02	25.2	23.11
Merged-chr1-63113741-4	chr1	63113278	63114278	+	977.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045915)	promoter-TSS (NR_045915)	489.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	334.65	265.41	247.89	333.31	266.84	233.1	331.64	197.21	182.99
Merged-chr17-88496527-2	chr17	88496025	88497025	+	977.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33599.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	6.29	5.53	0.0	10.8	6.53	3.22	2.11	4.86	3.75
Merged-chr13-42301403-3	chr13	42300884	42301884	+	977.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-92.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	17.73	5.99	12.95	12.82	5.13	16.08	11.62	10.17	5.0
Merged-chr13-59562690-3	chr13	59562164	59563164	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5317.0	NM_023328	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	2.29	7.83	0.0	10.8	13.06	25.72	10.56	3.98	5.62
Merged-chr13-109239483-3	chr13	109238979	109239979	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-85265.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	12.01	3.69	2.77	9.45	6.06	5.63	4.22	6.19	1.25
Merged-chr11-114931269-3	chr11	114930762	114931762	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	MIRb|SINE|MIR	3124.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	114.41	110.13	90.65	116.73	80.24	106.9	145.75	104.35	78.07
Merged-chr19-21472581-3	chr19	21472065	21473065	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010266)	promoter-TSS (NM_010266)	96.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	9.15	3.69	0.0	5.4	11.2	20.9	5.28	0.0	1.25
Merged-chr2-21055642-3	chr2	21055118	21056118	+	977.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86744.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	21.17	18.43	17.57	60.72	38.72	40.19	68.65	80.47	48.09
Merged-chr12-69159714-3	chr12	69159231	69160231	+	977.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009093)	promoter-TSS (NM_009093)	-545.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	78.94	65.89	43.47	57.35	38.25	61.09	59.15	75.61	44.34
Merged-chr5-99381164-3	chr5	99380660	99381660	+	977.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	RMER1B|Other|Other	-128233.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	242.55	264.03	143.37	277.98	308.83	217.83	268.27	338.7	133.65
Merged-chr17-84361160-3	chr17	84360660	84361660	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	105048.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	20.59	10.14	12.95	16.87	5.13	14.47	14.79	9.29	6.25
Merged-chr9-57071987-3	chr9	57071515	57072515	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045886)	promoter-TSS (NR_045886)	-25.0	NM_001110351	20466.0	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	96.68	91.7	94.35	68.15	66.71	114.14	66.54	99.93	99.92
Merged-chr19-11540357-3	chr19	11539856	11540856	+	977.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025658, intron 1 of 6)	intron (NM_025658, intron 1 of 6)	3507.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	51.48	67.27	48.1	60.05	66.71	42.6	57.03	111.87	60.58
Merged-chr5-130078282-3	chr5	130077788	130078788	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	-1082.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	13.16	11.52	16.65	14.84	10.26	16.88	26.4	12.38	5.0
Merged-chr9-119265570-3	chr9	119265064	119266064	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	B4A|SINE|B4	-33872.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	34.9	28.57	24.97	43.86	34.52	49.03	44.36	38.47	33.72
Merged-chr17-28432229-3	chr17	28431745	28432745	+	977.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	MER90a|LTR|ERV1	53904.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	25.74	17.05	37.92	29.69	15.86	27.33	26.4	21.22	26.23
Merged-chr5-33652399-5	chr5	33651909	33652909	+	977.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356983)	TTS (NM_001356983)	165.0	NM_001289725	20492.0	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	209.37	207.81	192.39	168.68	165.61	209.79	182.72	191.46	164.88
Merged-chr12-3344919-3	chr12	3344414	3345414	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20218.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	186.49	152.52	148.92	178.13	110.56	158.35	237.64	210.91	130.53
Merged-chr4-12499748-2	chr4	12499236	12500236	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-327721.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	17.16	23.5	24.05	28.34	20.06	45.01	26.4	29.18	34.35
Merged-chr12-39996345-1	chr12	39995845	39996845	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41031.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	1.72	1.84	3.7	0.67	3.27	4.02	0.0	0.88	6.25
Merged-chr1-169442890-1	chr1	169442390	169443390	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	88574.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	12.01	10.6	1.85	6.07	3.27	3.22	1.06	3.54	6.25
Merged-chr19-37613147-3	chr19	37612656	37613656	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	62738.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	35.47	71.42	29.6	43.18	37.79	42.6	38.02	30.07	38.72
Merged-chr6-108618361-1	chr6	108617861	108618861	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	4806.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	4.58	2.76	3.7	10.12	15.86	13.66	8.45	3.98	2.5
Merged-chr17-7925401-3	chr17	7924896	7925896	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145968)	promoter-TSS (NM_145968)	-604.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	41.76	36.4	7.4	35.76	20.99	21.7	43.3	33.16	8.74
Merged-chr6-39268821-2	chr6	39268310	39269310	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62037.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.72	9.68	5.55	15.52	9.33	4.02	12.67	9.73	3.75
Merged-chr5-65763535-3	chr5	65763030	65764030	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024917)	promoter-TSS (NM_001024917)	9.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	95.53	66.81	60.12	74.22	69.98	80.38	106.67	48.64	61.83
Merged-chr5-99215431-3	chr5	99214907	99215907	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37520.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	86.38	54.37	50.87	58.03	47.12	73.95	67.6	48.2	49.34
Merged-chr9-3403296-2	chr9	3402818	3403818	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027545)	promoter-TSS (NM_027545)	-767.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	61.78	78.33	52.72	41.83	56.45	65.11	96.11	72.07	58.71
Merged-chr7-78846539-1	chr7	78846039	78847039	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029585, intron 1 of 4)	intron (NM_029585, intron 1 of 4)	672.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	92.67	108.28	44.4	85.69	119.43	147.09	128.85	100.37	53.08
Merged-chr12-117348866-1	chr12	117348366	117349366	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11854.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	1.14	1.84	5.55	6.75	6.06	4.82	0.0	1.77	2.5
Merged-chr6-54039800-4	chr6	54039258	54040258	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163640)	promoter-TSS (NM_001163640)	-174.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	84.09	57.14	49.95	78.27	44.78	77.97	65.48	44.66	28.73
Merged-chr3-107332544-1	chr3	107332044	107333044	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	745.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	167.61	160.35	114.69	180.82	184.27	149.5	148.92	187.48	93.05
Merged-chr4-63215367-3	chr4	63214877	63215877	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-35.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	2.86	2.76	12.95	4.72	2.8	6.43	5.28	0.88	3.75
Merged-chr1-144263531-1	chr1	144263031	144264031	+	977.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14427.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	36.04	29.49	24.05	38.46	24.72	20.09	40.14	43.77	28.1
Merged-chr1-186444999-2	chr1	186444479	186445479	+	977.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113702.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.58	5.53	0.0	4.72	1.4	1.61	1.06	1.77	2.5
Merged-chr6-146438289-1	chr6	146437789	146438789	+	977.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 2 of 56)	intron (NM_019923, intron 2 of 56)	63934.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.72	4.15	1.85	4.72	3.73	4.82	1.06	4.42	3.75
Merged-chr1-93818351-3	chr1	93817853	93818853	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025454, exon 8 of 8)	3' UTR (NM_025454, exon 8 of 8)	-6887.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	16.02	22.58	39.77	14.84	27.52	38.58	33.8	25.2	28.73
Merged-chr10-95232740-3	chr10	95232242	95233242	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-86917.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	60.64	46.08	39.77	65.45	43.39	56.27	62.31	57.04	38.72
Merged-chr1-165680549-3	chr1	165680029	165681029	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	27565.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	223.67	156.21	92.5	192.97	134.35	189.69	143.64	135.75	98.05
Merged-chr10-25449568-3	chr10	25449079	25450079	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 3 of 16)	intron (NM_001358754, intron 3 of 16)	41211.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	58.92	40.09	27.75	52.63	47.58	37.78	41.19	25.65	27.48
Merged-chr6-148986155-3	chr6	148985652	148986652	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39682.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	3.43	3.69	0.0	5.4	1.4	1.61	8.45	7.52	1.25
Merged-chrX-134600371-3	chrX	134599855	134600855	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313717)	promoter-TSS (NM_001313717)	650.0	NM_013463	11605.0	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	267.72	252.51	170.19	360.3	439.92	163.17	259.82	298.46	104.3
Merged-chr19-47937105-3	chr19	47936550	47937550	+	976.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-662.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	109.83	125.33	98.97	87.04	133.42	94.85	136.25	166.25	89.93
Merged-chr12-26436558-2	chr12	26436078	26437078	+	976.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19874.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	32.04	45.62	49.95	39.81	30.32	46.62	6.34	4.42	6.25
Merged-chr7-122305602-3	chr7	122305112	122306112	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	16487.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	36.04	38.71	23.12	26.99	14.0	26.53	24.29	17.24	17.49
Merged-chr5-30516539-3	chr5	30516037	30517037	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028483, intron 3 of 6)	intron (NM_028483, intron 3 of 6)	29299.0	NM_028483	73259.0	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	6.86	3.69	3.7	3.37	5.6	3.22	9.51	4.42	6.25
Merged-chr13-76579599-3	chr13	76579094	76580094	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	194633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	9.15	11.52	1.85	13.49	6.06	6.43	7.39	6.19	3.75
Merged-chr6-24989391-3	chr6	24988882	24989882	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33257.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	6.29	11.06	1.85	10.8	6.53	8.04	15.84	13.27	5.0
Merged-chr12-80069358-3	chr12	80068847	80069847	+	976.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43666.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	9.15	7.83	1.85	14.84	5.6	9.65	9.51	8.84	8.12
Merged-chr4-141618687-3	chr4	141618172	141619172	+	976.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-39.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	32.61	13.82	9.25	28.34	15.39	8.04	23.24	16.36	9.37
Merged-chr4-132976999-3	chr4	132976515	132977515	+	976.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2920.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	75.51	59.44	55.5	56.68	28.92	55.46	61.26	58.81	63.08
Merged-chr9-22054945-3	chr9	22054453	22055453	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2930.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	14.87	10.6	0.0	22.94	9.33	6.43	8.45	5.31	6.87
Merged-chr2-80617159-3	chr2	80616635	80617635	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024438)	promoter-TSS (NM_024438)	-79.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	9.72	5.53	12.95	12.14	11.66	11.25	21.12	13.27	9.99
Merged-chr6-123229828-3	chr6	123229322	123230322	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020001)	promoter-TSS (NM_020001)	-21.0	NM_001190320	56620.0	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	98.39	114.74	54.57	113.35	83.04	86.81	102.45	88.43	59.95
Merged-chr10-80098782-3	chr10	80098275	80099275	+	976.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359637, intron 1 of 3)	intron (NM_001359637, intron 1 of 3)	2412.0	NM_001359635	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	46.34	38.71	70.3	16.19	15.39	20.9	51.75	53.5	18.11
Merged-chrX-7421162-3	chrX	7420651	7421651	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027925)	promoter-TSS (NR_027925)	-104.0	NR_027925	68355.0	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	1.14	5.07	0.0	4.72	0.93	8.04	1.06	2.21	2.5
Merged-chr8-25593663-3	chr8	25593169	25594169	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173012, intron 3 of 10)	intron (NM_173012, intron 3 of 10)	3818.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	93.24	91.24	71.22	70.85	82.11	85.2	100.34	84.45	81.19
Merged-chr2-5116464-3	chr2	5115973	5116973	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	9.72	7.83	6.47	7.42	2.33	8.04	15.84	11.94	8.12
Merged-chr8-116975936-3	chr8	116975435	116976435	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	2718.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	59.49	73.73	74.0	88.39	91.44	69.13	71.82	76.94	39.35
Merged-chr8-120509278-3	chr8	120508782	120509782	+	976.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	20416.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	32.61	22.12	22.2	31.04	29.86	47.42	32.74	27.41	23.73
Merged-chr6-42354357-4	chr6	42353826	42354826	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	4498.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	111.55	55.75	41.62	112.68	29.39	65.91	59.15	50.85	34.35
Merged-chr6-50545622-4	chr6	50545175	50546175	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20799.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	19.45	17.97	21.27	20.24	19.13	26.53	46.47	63.23	19.98
Merged-chr10-127320247-3	chr10	127319736	127320736	+	976.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1728.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	68.65	45.16	48.1	66.8	51.78	60.28	58.09	64.56	37.47
Merged-chr1-154794791-3	chr1	154794261	154795261	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-68841.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	12.59	7.83	11.1	4.72	12.13	12.86	15.84	9.73	5.62
Merged-chr17-48234698-3	chr17	48234174	48235174	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347399, intron 1 of 2)	intron (NM_001347399, intron 1 of 2)	1935.0	NM_021406	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	6.29	3.69	8.32	14.84	9.33	16.08	6.34	5.31	5.0
Merged-chr16-55951149-3	chr16	55950654	55951654	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	41.19	66.35	30.52	55.33	62.05	36.17	58.09	80.92	31.85
Merged-chr7-110772731-3	chr7	110772234	110773234	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009667, exon 1 of 15)	5' UTR (NM_009667, exon 1 of 15)	130.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	36.04	27.19	7.4	58.7	30.79	53.85	47.53	38.03	34.97
Merged-chr5-127621330-3	chr5	127620824	127621824	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	15.45	25.34	12.95	20.24	11.66	27.33	7.39	11.5	5.0
Merged-chrX-162735714-3	chrX	162735194	162736194	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153331, exon 2 of 2)	non-coding (NR_153331, exon 2 of 2)	919.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	35.47	43.31	24.05	31.04	40.59	38.58	41.19	48.2	20.61
Merged-chr18-32395805-3	chr18	32395296	32396296	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-17512.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	12.01	12.9	16.65	10.8	8.4	15.27	16.9	14.15	19.98
Merged-chr3-133542238-3	chr3	133541734	133542734	+	976.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	2156.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	25.17	34.1	23.12	43.86	24.26	24.92	29.57	36.26	21.23
Merged-chr15-73023104-3	chr15	73022603	73023603	+	976.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	32709.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	6.29	5.07	0.0	2.02	3.27	4.82	3.17	0.44	0.0
Merged-chr3-51560705-4	chr3	51560189	51561189	+	976.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_080793, exon 1 of 8)	5' UTR (NM_080793, exon 1 of 8)	134.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	350.67	343.28	325.58	272.59	321.42	188.09	286.23	300.23	171.12
Merged-chr7-99536273-4	chr7	99535744	99536744	+	976.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	758.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	211.09	157.13	135.97	151.81	136.69	103.69	98.23	96.39	53.71
Merged-chr5-113015607-3	chr5	113015146	113016146	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177078)	promoter-TSS (NM_177078)	-108.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	162.46	113.35	148.92	122.12	82.57	137.45	154.2	90.64	88.68
Merged-chr13-40978843-3	chr13	40978337	40979337	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	MER2|DNA|TcMar-Tigger	-22173.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	10.87	13.82	3.7	22.94	18.66	10.45	16.9	12.82	7.49
Merged-chr13-92964373-3	chr13	92963854	92964854	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7B_LINE|LINE|CR1	-108950.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	19.45	14.28	15.72	2.7	4.67	5.63	41.19	32.72	17.49
Merged-chr3-101597423-3	chr3	101596926	101597926	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7281.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	176.19	258.5	179.44	176.1	168.88	144.68	185.89	219.76	127.4
Merged-chr14-44988357-6	chr14	44987899	44988899	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008964, exon 1 of 2)	5' UTR (NM_008964, exon 1 of 2)	288.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	174.48	220.25	136.89	141.69	133.89	114.14	132.02	146.36	112.42
Merged-chr9-113742017-1	chr9	113741517	113742517	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	CpG	544.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	331.22	312.87	270.09	274.61	240.72	222.65	223.91	234.35	172.37
Merged-chr4-123918009-3	chr4	123917465	123918465	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 1 of 6)	CpG	532.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	362.68	346.51	278.41	365.02	370.41	312.67	318.97	290.95	202.97
Merged-chr9-58560415-3	chr9	58559927	58560927	+	976.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19487.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	8.58	6.91	4.62	27.66	28.46	23.31	10.56	17.69	7.49
Merged-chr14-60990279-2	chr14	60989788	60990788	+	976.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	47699.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	5.15	6.45	0.0	7.42	3.27	4.82	17.96	9.73	24.98
Merged-chr2-73553600-3	chr2	73553085	73554085	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24098.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	64.64	73.73	33.3	57.35	83.04	81.18	52.81	69.86	54.33
Merged-chr11-83648422-3	chr11	83647938	83648938	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011337, intron 2 of 2)	intron (NM_011337, intron 2 of 2)	940.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	135.58	118.88	88.8	165.98	139.02	155.13	134.14	167.58	81.81
Merged-chr15-25862138-3	chr15	25861649	25862649	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	18851.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	16.59	7.37	2.77	16.87	7.0	7.23	17.96	11.94	11.24
Merged-chrX-129782057-3	chrX	129781559	129782559	+	976.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	32317.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	7.44	7.83	9.25	6.75	7.0	4.82	3.17	6.19	10.62
Merged-chrX-60404072-5	chrX	60403578	60404578	+	976.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001798)	promoter-TSS (NM_001001798)	-73.0	NM_001037863	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	129.86	123.03	123.94	101.21	116.16	95.65	116.18	107.0	63.08
Merged-chr10-95843409-3	chr10	95842909	95843909	+	976.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97254.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	21.17	13.82	3.7	18.22	11.2	24.11	30.63	15.92	20.61
Merged-chr12-33050539-3	chr12	33050040	33051040	+	976.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 11 of 19)	intron (NM_001024478, intron 11 of 19)	42335.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.15	5.07	5.55	4.72	3.27	3.22	14.79	14.15	7.49
Merged-chrX-48106361-3	chrX	48105872	48106872	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2353.0	NM_001289729	170745.0	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	4.0	5.53	1.85	7.42	4.2	8.04	4.22	4.42	7.49
Merged-chr5-114596809-3	chr5	114596270	114597270	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28519.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	13.73	16.13	14.8	28.34	25.66	26.53	22.18	14.59	28.73
Merged-chr9-31262422-3	chr9	31261928	31262928	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8973.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	8.01	5.99	5.55	13.49	5.13	4.02	6.34	3.1	6.25
Merged-chr10-100138701-3	chr10	100138149	100139149	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122828.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	24.03	11.98	18.5	25.64	15.86	20.9	32.74	26.09	9.99
Merged-chr17-83212663-3	chr17	83212168	83213168	+	976.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2615.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	24.6	47.92	46.25	55.33	62.05	91.63	85.55	53.5	64.95
Merged-chr7-30232878-3	chr7	30232395	30233395	+	976.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360649)	promoter-TSS (NM_001360649)	-698.0	NM_025548	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	65.21	58.98	59.2	98.51	82.57	61.09	70.76	68.98	39.97
Merged-chr2-165061805-3	chr2	165061310	165062310	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	MER113|DNA|hAT-Charlie	6174.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	58.92	34.56	10.17	57.35	34.99	27.33	160.54	167.14	69.32
Merged-chr8-82941981-1	chr8	82941481	82942481	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	78625.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	14.3	35.94	17.57	81.64	50.38	57.07	12.67	6.19	14.99
Merged-chrX-163897548-3	chrX	163897052	163898052	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11465.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	9.72	16.13	12.02	11.47	8.86	12.86	13.73	13.27	13.74
Merged-chr14-57399073-3	chr14	57398579	57399579	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-596.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	54.35	77.87	80.47	65.45	88.64	97.26	65.48	80.03	58.08
Merged-chr5-66140154-3	chr5	66139659	66140659	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	10819.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	69.79	49.76	55.5	43.18	52.25	42.6	58.09	30.51	25.61
Merged-chr14-120244877-3	chr14	120244382	120245382	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30787.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	16.59	11.06	1.85	13.49	10.26	4.82	16.9	12.38	3.75
Merged-chr9-44767328-2	chr9	44766829	44767829	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145985, intron 1 of 9)	CpG	479.0	NM_145985	213827.0	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	311.77	365.4	225.69	338.71	312.56	247.57	294.68	240.1	200.47
Merged-chr1-67361007-1	chr1	67360507	67361507	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	237980.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	1.72	2.76	1.85	5.4	2.8	1.61	5.28	4.86	6.87
Merged-chr5-130205703-3	chr5	130205203	130206203	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14041.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	10.3	6.91	31.45	21.59	17.73	23.31	19.01	10.17	8.12
Merged-chr14-55728476-3	chr14	55727981	55728981	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6218.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	15.45	11.06	15.72	18.22	9.33	14.47	16.9	13.27	7.49
Merged-chr7-132672670-1	chr7	132672170	132673170	+	976.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	62027.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	7.44	4.15	1.85	16.87	17.26	8.04	4.22	8.4	2.5
Merged-chr3-109062605-3	chr3	109062114	109063114	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17885.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	8.58	9.68	5.55	16.87	3.27	0.0	10.56	6.63	11.24
Merged-chr19-53476997-2	chr19	53476501	53477501	+	976.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12205.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	12.59	3.23	5.55	14.17	9.33	11.25	2.11	3.98	1.25
Merged-chr14-45038206-3	chr14	45037695	45038695	+	976.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	50084.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	20.59	30.87	24.97	24.29	15.86	20.9	25.35	22.99	29.35
Merged-chr4-74252651-3	chr4	74252150	74253150	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 1 of 20)	intron (NM_001356561, intron 1 of 20)	771.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	109.83	114.74	81.4	124.15	175.87	109.32	125.69	105.24	25.61
Merged-chr10-25296774-3	chr10	25296254	25297254	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	CpG	2409.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	94.39	55.75	56.42	138.32	84.9	71.54	123.57	80.03	46.22
Merged-chr2-120565555-3	chr2	120565042	120566042	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1683.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	70.36	64.97	53.65	59.38	34.99	63.5	91.89	87.99	63.7
Merged-chr6-51556771-3	chr6	51556254	51557254	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB2|LINE|L1	11461.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	48.62	48.38	65.67	48.58	45.25	46.62	48.58	37.14	27.48
Merged-chr15-59435869-3	chr15	59435378	59436378	+	976.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	ID4_|SINE|ID	61680.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	49.77	52.07	41.62	61.4	64.84	47.42	81.33	70.75	27.48
Merged-chr10-68264073-3	chr10	68263582	68264582	+	976.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	14644.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	30.89	18.43	18.5	35.09	23.79	43.4	32.74	25.65	14.99
Merged-chr3-27615583-3	chr3	27615047	27616047	+	976.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-30552.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	94.39	113.35	90.65	105.93	85.84	117.35	135.19	136.19	108.67
Merged-chr10-60362357-3	chr10	60361860	60362860	+	976.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	15509.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	54.35	50.69	37.0	68.82	63.91	51.44	63.37	53.94	18.74
Merged-chr7-132656768-3	chr7	132656253	132657253	+	976.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	46110.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	41.76	30.87	25.9	43.86	27.52	57.07	27.46	26.09	18.74
Merged-chr3-126661188-3	chr3	126660671	126661671	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	64220.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	29.17	20.27	7.4	22.94	20.53	11.25	7.39	6.63	6.87
Merged-chr15-97784882-3	chr15	97784366	97785366	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	CpG	501.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	234.54	231.77	199.79	244.92	227.66	246.76	241.87	215.78	129.28
Merged-chr14-67945534-3	chr14	67945016	67946016	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11944.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	25.17	26.73	19.42	14.84	13.06	7.23	13.73	7.96	11.87
Merged-chr12-35711926-3	chr12	35711444	35712444	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16826.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	34.9	32.25	22.2	31.04	22.39	40.99	15.84	13.71	25.61
Merged-chr19-6118101-3	chr19	6117627	6118627	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	459.0	NM_133678	66406.0	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	124.14	127.18	102.67	112.0	109.16	135.04	117.24	87.99	69.95
Merged-chr10-117856412-3	chr10	117855916	117856916	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10442.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	62.35	50.69	39.77	57.35	40.59	56.27	53.87	58.37	47.46
Merged-chr2-145371005-3	chr2	145370504	145371504	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	128393.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	22.88	20.74	12.02	26.31	21.93	15.27	28.52	32.28	20.61
Merged-chr4-142071080-3	chr4	142070594	142071594	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-13204.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	50.91	51.61	54.57	58.7	50.38	31.35	57.03	52.62	34.35
Merged-chr6-128913797-3	chr6	128913276	128914276	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	18069.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	40.62	41.47	38.85	26.99	21.93	32.15	13.73	15.03	5.0
Merged-chr16-90743853-3	chr16	90743353	90744353	+	976.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	intron (NM_029844, intron 1 of 2)	5529.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	84.09	54.37	44.4	43.18	48.05	54.66	47.53	41.12	45.59
Merged-chr12-85647499-3	chr12	85646988	85647988	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39232.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	37.18	37.78	24.05	57.35	33.59	45.82	46.47	55.71	48.09
Merged-chr3-146781356-3	chr3	146780865	146781865	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164200)	promoter-TSS (NM_001164200)	51.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	53.77	56.22	27.75	72.19	58.78	57.87	68.65	63.23	29.98
Merged-chr4-117219033-3	chr4	117218549	117219549	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	32868.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	21.74	11.52	24.05	32.39	11.66	34.56	11.62	16.36	11.87
Merged-chrX-74245838-3	chrX	74245320	74246320	+	976.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	CpG	714.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	61.21	88.47	86.95	75.57	69.04	69.93	52.81	105.68	69.32
Merged-chr7-132811122-3	chr7	132810595	132811595	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	2101.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	16.02	20.27	22.2	16.19	7.93	7.23	14.79	8.84	13.12
Merged-chr11-3189074-5	chr11	3188555	3189555	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030207, exon 2 of 33)	5' UTR (NM_030207, exon 2 of 33)	4408.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	49.2	70.96	89.72	62.75	109.16	102.08	81.33	68.54	120.53
Merged-chr6-71440091-3	chr6	71439572	71440572	+	976.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024288, exon 1 of 9)	exon (NM_024288, exon 1 of 9)	565.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	215.09	162.2	240.49	205.79	153.01	211.4	269.33	185.27	99.92
Merged-chr7-19028272-2	chr7	19027774	19028774	+	976.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	3897.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	15.45	29.49	17.57	22.94	11.66	19.29	13.73	10.17	6.25
Merged-chr9-7272430-3	chr9	7271927	7272927	+	976.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008607)	promoter-TSS (NM_008607)	-87.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	15.45	17.97	24.97	22.94	17.73	26.53	7.39	8.4	7.49
Merged-chr10-61202068-3	chr10	61201559	61202559	+	976.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 19 of 21)	intron (NM_001081127, intron 19 of 21)	26797.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	8.01	7.37	3.7	7.42	5.13	11.25	9.51	13.27	5.0
Merged-chr12-85476022-6	chr12	85475576	85476576	+	976.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010234, exon 4 of 4)	exon (NM_010234, exon 4 of 4)	2186.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	36.04	27.19	28.67	37.78	19.59	15.27	11.62	16.36	12.49
Merged-chr11-120990483-3	chr11	120990067	120991067	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	C-rich|Low_complexity|Low_complexity	766.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	303.76	292.14	286.74	256.39	241.18	215.42	288.34	241.87	131.15
Merged-chr2-160353941-3	chr2	160353437	160354437	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13128.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	29.75	28.11	16.65	35.09	21.93	24.11	40.14	38.47	8.12
Merged-chr3-81102770-1	chr3	81102270	81103270	+	976.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	66354.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	85.24	117.5	40.7	77.59	89.1	57.87	67.6	83.13	62.45
Merged-chr13-12273117-3	chr13	12272617	12273617	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033268, intron 18 of 20)	intron (NM_033268, intron 18 of 20)	-15004.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	5.72	2.76	5.55	4.05	0.93	1.61	2.11	3.98	1.25
Merged-chr12-3282695-3	chr12	3282191	3283191	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	27278.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	97.82	125.79	84.17	64.77	75.11	56.27	138.36	130.88	83.69
Merged-chr11-4980393-2	chr11	4979957	4980957	+	976.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	MLT1E3|LTR|ERVL-MaLR	-6367.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	35.47	29.03	19.42	47.9	19.13	30.54	9.51	5.75	9.99
Merged-chr15-55252609-2	chr15	55252100	55253100	+	976.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145470, exon 9 of 9)	3' UTR (NM_145470, exon 9 of 9)	-55150.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	1.72	2.76	1.85	0.67	2.33	7.23	2.11	2.21	2.5
Merged-chr19-40679831-3	chr19	40679325	40680325	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	Lx5|LINE|L1	20055.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	143.01	110.59	108.22	136.29	116.63	135.04	152.09	137.07	88.06
Merged-chr13-23585118-3	chr13	23584595	23585595	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290530)	TTS (NM_001290530)	875.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	228.82	321.17	161.87	205.11	222.99	181.66	193.28	238.77	177.99
Merged-chr18-56433290-3	chr18	56432792	56433792	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	1160.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	20.59	17.51	14.8	20.24	10.73	8.04	17.96	11.05	11.24
Merged-chr6-38338154-3	chr6	38337663	38338663	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 2 of 8)	intron (NM_028864, intron 2 of 8)	16440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	40.04	62.21	65.67	33.74	26.59	36.97	54.92	77.38	33.72
Merged-chr10-21992178-3	chr10	21991705	21992705	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161849)	promoter-TSS (NM_001161849)	-18.0	NM_001161849	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	144.16	145.61	149.84	194.32	123.16	217.83	192.23	221.08	118.66
Merged-chr2-128687348-3	chr2	128686855	128687855	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	40.0	NM_008569	17222.0	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	89.24	81.1	76.77	138.32	120.83	136.64	113.01	91.97	52.46
Merged-chr3-145929775-3	chr3	145929279	145930279	+	976.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	5517.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	18.88	14.75	14.8	14.84	8.86	21.7	10.56	9.29	11.87
Merged-chr13-110545578-2	chr13	110545095	110546095	+	976.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150551.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	3.43	6.45	0.0	20.24	7.0	9.65	19.01	9.73	6.87
Merged-chr4-129855296-4	chr4	129854827	129855827	+	976.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34619.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	61.21	47.46	45.32	58.7	56.91	61.89	73.93	52.62	56.83
Merged-chr18-53268375-3	chr18	53267873	53268873	+	976.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	22711.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	237.97	209.66	150.77	242.9	215.06	175.23	253.48	297.58	90.56
Merged-chr8-11340498-3	chr8	11339999	11340999	+	976.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27673.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	35.47	23.04	7.4	35.76	27.52	30.54	19.01	10.17	11.24
Merged-chr6-120150701-3	chr6	120150218	120151218	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-43105.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	11.44	17.97	12.95	51.28	40.59	34.56	22.18	15.92	13.12
Merged-chr15-97162474-3	chr15	97161953	97162953	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155278, intron 2 of 3)	intron (NR_155278, intron 2 of 3)	4791.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	69.79	48.38	39.77	66.8	80.24	71.54	60.2	37.14	33.1
Merged-chr2-133512816-3	chr2	133512316	133513316	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39343.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	13.16	5.53	4.62	7.42	6.06	9.65	8.45	5.31	8.12
Merged-chr10-22000787-3	chr10	22000281	22001281	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161850)	TTS (NM_001161850)	6115.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	22.88	11.98	11.1	25.64	17.26	28.13	14.79	23.88	17.49
Merged-chr10-19105224-3	chr10	19104732	19105732	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36517.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	23.45	10.6	5.55	13.49	9.33	4.82	24.29	17.24	5.62
Merged-chr5-31758950-3	chr5	31758453	31759453	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	intron (NM_144541, intron 3 of 11)	60903.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	64.07	71.42	46.25	61.4	59.71	69.13	73.93	76.05	58.08
Merged-chr17-40708972-3	chr17	40708477	40709477	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur1|LINE|L1	-18143.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	17.73	16.13	10.17	15.52	14.46	10.45	19.01	25.65	16.24
Merged-chr10-81268205-3	chr10	81267702	81268702	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018758)	promoter-TSS (NM_018758)	30.0	NM_018758	57267.0	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	80.09	105.06	89.72	99.18	93.3	90.83	92.94	113.19	49.96
Merged-chr13-37833710-3	chr13	37833203	37834203	+	976.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	6310.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	43.48	29.49	38.85	35.76	29.39	41.8	23.24	25.2	22.48
Merged-chr14-63193712-4	chr14	63193207	63194207	+	976.042847	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201610)	promoter-TSS (NM_201610)	-182.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	49.2	54.83	43.47	57.35	87.7	54.66	72.88	63.23	22.48
Merged-chr5-147471428-3	chr5	147470920	147471920	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	41264.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	30.32	40.09	21.27	43.18	29.86	31.35	28.52	32.28	23.73
Merged-chr13-38028150-1	chr13	38027650	38028650	+	976.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027724, exon 3 of 13)	exon (NM_027724, exon 3 of 13)	8787.0	NM_027724	71213.0	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	4.58	3.23	6.47	3.37	3.27	0.8	26.4	26.09	6.25
Merged-chr16-93817064-2	chr16	93816549	93817549	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-15072.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	157.31	127.18	96.2	157.21	91.9	112.53	109.84	131.77	81.81
Merged-chr17-34250749-1	chr17	34250249	34251249	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11844.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	11.44	8.29	1.85	38.46	19.13	7.23	5.28	4.86	1.87
Merged-chr9-100450912-1	chr9	100450412	100451412	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	35561.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	9.72	8.75	17.57	22.27	11.66	11.25	9.51	7.07	6.25
Merged-chr5-117890879-2	chr5	117890386	117891386	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	intron (NM_008712, intron 2 of 27)	24047.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	87.52	79.72	55.5	89.74	70.44	140.66	77.1	72.52	74.94
Merged-chr1-58795452-3	chr1	58794939	58795939	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009812)	promoter-TSS (NM_009812)	65.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	100.11	83.86	81.4	100.53	69.51	76.36	81.33	51.73	68.7
Merged-chr7-55928851-1	chr7	55928351	55929351	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 30 of 30)	MLT1E1|LTR|ERVL-MaLR	33642.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	13.16	10.6	18.5	11.47	10.26	8.84	9.51	8.4	14.99
Merged-chr17-51813365-3	chr17	51812878	51813878	+	976.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	CpG	-1194.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	16.02	17.97	4.62	18.89	10.73	0.8	17.96	7.07	10.62
Merged-chr14-76402413-1	chr14	76401913	76402913	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12548.0	NM_001310646	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	12.59	14.75	10.17	14.17	11.66	9.65	10.56	16.36	7.49
Merged-chr18-12232820-1	chr18	12232320	12233320	+	976.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008720, intron 1 of 24)	RMER1C|Other|Other	3566.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	5.72	3.69	5.55	7.42	6.53	8.04	6.34	3.1	3.75
Merged-chr6-87750474-3	chr6	87750017	87751017	+	975.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 3 of 7)	intron (NM_001159697, intron 3 of 7)	19648.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	27.46	15.67	7.4	56.68	25.66	32.15	36.97	24.32	13.74
Merged-chr13-13524312-3	chr13	13523795	13524795	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66114.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	8.58	3.69	3.7	8.77	13.06	4.82	13.73	8.84	6.25
Merged-chr1-46905882-3	chr1	46905385	46906385	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	19891.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	22.31	32.25	9.25	24.96	11.66	40.99	17.96	17.24	12.49
Merged-chr5-21200216-3	chr5	21199709	21200709	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	13942.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	33.18	42.85	31.45	30.36	29.39	52.25	20.07	27.86	27.48
Merged-chr13-10107026-3	chr13	10106504	10107504	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	253799.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	28.03	15.21	11.1	27.66	21.46	16.88	24.29	16.36	11.24
Merged-chr5-91961566-3	chr5	91961051	91962051	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073442, intron 1 of 9)	intron (NR_073442, intron 1 of 9)	1005.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	120.13	151.6	69.37	94.46	75.11	73.95	152.09	160.95	83.69
Merged-chr19-24990618-3	chr19	24990110	24991110	+	975.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8919.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	64.07	73.73	62.9	53.98	33.59	63.5	69.71	81.36	64.33
Merged-chr2-18989033-3	chr2	18988538	18989538	+	975.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	9083.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	41.76	19.81	8.32	15.52	4.67	8.04	14.79	6.19	2.5
Merged-chr12-113146879-2	chr12	113146369	113147369	+	975.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	33.18	17.51	9.25	73.54	36.85	28.13	9.51	4.86	9.37
Merged-chr14-19971043-3	chr14	19970550	19971550	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	5643.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	80.66	70.04	52.72	72.19	45.72	33.76	42.25	50.41	28.1
Merged-chr5-148496190-3	chr5	148495695	148496695	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55478.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	92.1	64.97	26.82	89.06	112.9	74.75	85.55	97.72	35.6
Merged-chr13-44420032-3	chr13	44419541	44420541	+	975.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19686.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	46.34	37.32	20.35	41.16	44.78	24.11	50.7	33.16	21.86
Merged-chr9-60743387-3	chr9	60742899	60743899	+	975.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30278.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	8.58	15.21	9.25	22.94	16.79	23.31	8.45	6.19	1.25
Merged-chr11-119228530-3	chr11	119228037	119229037	+	975.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	-35.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	121.85	92.62	38.85	145.06	102.63	81.99	46.47	46.43	43.09
Merged-chr17-5520149-2	chr17	5519658	5520658	+	975.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	27558.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	12.59	25.8	3.7	23.62	18.66	35.37	11.62	17.69	26.23
Merged-chr5-117147384-1	chr5	117146884	117147884	+	975.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	13796.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	34.9	17.05	17.57	74.89	60.65	42.6	27.46	10.61	12.49
Merged-chr18-25881895-3	chr18	25881391	25882391	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127734.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	12.59	16.13	7.4	20.24	14.46	8.04	11.62	5.31	5.62
Merged-chr6-108371708-3	chr6	108371213	108372213	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 13 of 61)	Lx8|LINE|L1	-118030.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.0	3.23	7.4	4.72	3.73	0.0	4.22	1.77	5.0
Merged-chr16-36067939-3	chr16	36067438	36068438	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	3577.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	71.51	99.07	77.7	75.57	48.52	60.28	101.39	114.96	47.46
Merged-chr11-67966451-3	chr11	67965954	67966954	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	-4.0	NM_001361352	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	69.22	70.96	48.1	43.86	61.11	42.6	87.66	74.28	38.72
Merged-chr1-154104378-3	chr1	154103885	154104885	+	975.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-96802.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	93.24	118.42	74.92	127.52	95.17	91.63	72.88	101.26	46.84
Merged-chr5-8349714-3	chr5	8349216	8350216	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	18444.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	49.77	63.13	31.45	41.83	27.52	24.11	25.35	19.01	19.98
Merged-chr5-103744756-3	chr5	103744261	103745261	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	10.3	4.61	1.85	6.75	5.13	2.41	9.51	5.75	3.12
Merged-chr6-108401765-3	chr6	108401278	108402278	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 32 of 61)	intron (NM_010585, intron 32 of 61)	-87965.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	12.01	14.28	5.55	16.19	5.13	6.43	11.62	8.4	7.49
Merged-chr8-127982200-3	chr8	127981765	127982765	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	295960.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	26.89	20.27	18.5	8.1	8.4	21.7	25.35	25.2	22.48
Merged-chr8-41039666-3	chr8	41039159	41040159	+	975.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	2272.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	30.89	34.1	35.15	37.78	20.53	33.76	78.16	93.74	39.97
Merged-chr14-105898930-3	chr14	105898416	105899416	+	975.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2097.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	8.01	4.15	9.25	12.14	4.67	4.82	6.34	1.33	3.75
Merged-chr14-70549430-3	chr14	70548928	70549928	+	975.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_180588)	TTS (NM_180588)	4177.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	3.43	3.23	4.62	1.35	1.87	0.8	4.22	1.77	1.25
Merged-chr15-96712219-3	chr15	96711700	96712700	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12472.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	41.19	26.73	12.95	39.13	24.26	29.74	53.87	36.7	29.35
Merged-chr8-46869527-3	chr8	46869028	46870028	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117359.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	98.39	80.18	68.45	91.09	72.31	114.14	46.47	55.71	50.59
Merged-chr18-67736980-3	chr18	67736483	67737483	+	975.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12362.0	NM_008977	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	10.3	8.75	7.4	4.05	10.26	13.66	14.79	9.29	11.24
Merged-chr3-123481461-2	chr3	123480954	123481954	+	975.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008939, intron 4 of 10)	intron (NM_008939, intron 4 of 10)	26612.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	9.72	8.29	1.85	13.49	7.46	3.22	7.39	5.31	9.37
Merged-chr12-54402305-3	chr12	54401803	54402803	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10985.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	8.58	19.35	16.65	9.45	16.33	16.08	40.14	23.88	27.48
Merged-chr17-71301036-3	chr17	71300538	71301538	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9973.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	113.84	131.78	90.65	134.94	101.7	135.84	132.02	148.13	77.44
Merged-chr1-95591282-3	chr1	95590773	95591773	+	975.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009183, exon 5 of 5)	3' UTR (NM_009183, exon 5 of 5)	76321.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	58.35	60.82	37.0	64.77	59.71	38.58	57.03	44.66	39.35
Merged-chr5-72184610-2	chr5	72184147	72185147	+	975.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16458.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	60.07	59.9	61.97	41.16	44.32	65.11	54.92	56.16	46.84
Merged-chr9-35039402-3	chr9	35038879	35039879	+	975.61908	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77349.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	79.52	98.61	57.35	57.35	62.51	56.27	92.94	96.39	61.83
Merged-chr11-62550514-3	chr11	62550027	62551027	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002875)	promoter-TSS (NR_002875)	-644.0	NM_011664	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	667.01	728.04	422.7	744.89	768.34	439.67	586.18	794.57	311.01
Merged-chr3-135440296-3	chr3	135439794	135440794	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1168.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	154.45	204.59	147.99	181.5	182.4	168.8	171.1	229.04	119.28
Merged-chr5-122669299-3	chr5	122668797	122669797	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 8 of 12)	B4A|SINE|B4	-13300.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	72.08	67.27	12.02	96.48	62.98	59.48	91.89	80.03	23.73
Merged-chr14-30671632-3	chr14	30671114	30672114	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	17239.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	118.42	80.18	88.8	114.03	76.51	87.61	97.17	81.36	61.2
Merged-chr19-42080158-3	chr19	42079680	42080680	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198108, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	6190.0	NM_198108	226123.0	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	16.59	4.15	3.7	24.29	14.93	11.25	12.67	7.07	7.49
Merged-chr7-100952211-3	chr7	100951695	100952695	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	12171.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	97.25	92.16	72.15	80.29	69.98	103.69	89.78	72.96	106.17
Merged-chr5-72647762-3	chr5	72647262	72648262	+	975.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081205)	promoter-TSS (NM_001081205)	-34.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	16.59	3.23	0.0	8.77	6.06	4.82	3.17	6.19	0.0
Merged-chr3-108726571-3	chr3	108726078	108727078	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-4279.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	16.59	10.6	16.65	17.54	6.53	2.41	21.12	16.36	7.49
Merged-chr14-31593217-3	chr14	31592704	31593704	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15821.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	53.77	35.48	61.97	59.38	19.13	34.56	70.76	37.58	24.98
Merged-chr4-127151308-3	chr4	127150801	127151801	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17903.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	23.45	28.57	57.35	20.24	21.46	28.13	49.64	46.87	34.97
Merged-chrX-74003829-3	chrX	74003332	74004332	+	975.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19766.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	27.46	19.81	29.6	29.01	30.79	14.47	34.85	15.48	6.25
Merged-chr16-36720398-3	chr16	36719908	36720908	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	26430.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	8.01	5.53	4.62	9.45	6.53	14.47	3.17	5.31	3.75
Merged-chr5-113009648-3	chr5	113009120	113010120	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	5918.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	42.33	40.55	31.45	43.18	25.66	52.25	25.35	26.09	14.99
Merged-chr9-66831140-3	chr9	66830645	66831645	+	975.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3561.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	137.29	146.99	144.29	165.31	175.41	169.6	154.2	156.09	111.79
Merged-chr19-40895198-2	chr19	40894713	40895713	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106167)	TTS (NR_106167)	508.0	NM_028319	72672.0	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	124.14	162.66	152.62	104.58	114.76	200.14	195.39	144.59	104.3
Merged-chr17-34092797-3	chr17	34092294	34093294	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	415.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	46.91	35.02	28.67	14.17	5.6	9.65	32.74	28.3	14.36
Merged-chr1-170589826-3	chr1	170589346	170590346	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109985)	promoter-TSS (NM_001109985)	3.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	13.73	1.84	12.95	82.99	37.79	51.44	52.81	29.63	34.35
Merged-chr1-192932053-3	chr1	192931542	192932542	+	975.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 5 of 8)	intron (NM_001301370, intron 5 of 8)	-76290.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	18.31	27.19	14.8	12.14	9.33	19.29	20.07	22.11	22.48
Merged-chr2-144004922-3	chr2	144004400	144005400	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6363.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	96.11	89.85	64.75	63.42	46.65	47.42	80.27	81.36	40.59
Merged-chr1-170371468-3	chr1	170370965	170371965	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	62604.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	4.0	5.99	17.57	27.66	22.86	29.74	21.12	17.24	28.1
Merged-chr13-12121943-3	chr13	12121431	12122431	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-14986.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	21.17	27.65	13.87	32.39	29.39	35.37	46.47	35.37	29.35
Merged-chr2-92438112-3	chr2	92437590	92438590	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4021.0	NM_009963	12953.0	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	6.86	4.15	5.55	7.42	4.2	2.41	8.45	5.75	0.62
Merged-chr11-6490280-3	chr11	6489786	6490786	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14210.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	6.29	3.69	1.85	4.05	3.73	7.23	5.28	3.1	6.87
Merged-chrX-7169018-3	chrX	7168542	7169542	+	975.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016691, intron 6 of 11)	intron (NM_016691, intron 6 of 11)	19672.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	6.86	11.98	12.95	9.45	11.2	13.66	7.39	11.05	13.74
Merged-chr13-69526507-3	chr13	69525922	69526922	+	975.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	7442.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	92.67	70.5	61.05	76.92	56.45	84.4	51.75	34.05	18.74
Merged-chr8-46849056-3	chr8	46848514	46849514	+	975.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109269.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	109.83	127.64	75.85	105.93	104.96	78.77	148.92	173.77	82.44
Merged-chr11-54161027-3	chr11	54160526	54161526	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	52262.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	16.59	5.99	10.17	16.19	4.67	2.41	8.45	3.98	11.24
Merged-chr3-66981260-3	chr3	66980766	66981766	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302359)	promoter-TSS (NM_001302359)	-125.0	NM_001302359	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	6.29	1.84	0.0	10.8	1.87	4.82	8.45	0.44	6.25
Merged-chr5-24597537-3	chr5	24597037	24598037	+	975.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025891, intron 2 of 12)	intron (NM_025891, intron 2 of 12)	4465.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	27.46	29.49	40.7	10.8	14.93	32.15	15.84	15.92	14.36
Merged-chr7-88252205-2	chr7	88251684	88252684	+	975.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-25901.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	105.83	117.04	91.57	76.24	61.58	76.36	107.73	119.83	93.05
Merged-chr17-32966204-2	chr17	32965694	32966694	+	975.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033585)	promoter-TSS (NR_033585)	363.0	NM_153063	224691.0	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	92.67	76.03	57.35	109.98	141.82	110.12	155.26	145.47	71.2
Merged-chr17-51220710-3	chr17	51220270	51221270	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41418.0	NM_001285991	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	231.68	318.4	136.89	196.34	231.39	168.8	287.28	397.07	169.87
Merged-chr15-101381950-1	chr15	101381450	101382450	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11825.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	14.87	10.6	5.55	7.42	16.33	26.53	1.06	4.86	5.0
Merged-chr6-97855772-5	chr6	97855265	97856265	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	48707.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	140.15	146.99	98.97	194.99	120.36	121.37	117.24	144.59	79.94
Merged-chr19-32328329-1	chr19	32327829	32328829	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	20987.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.58	9.22	4.62	8.1	5.6	4.82	4.22	3.98	5.0
Merged-chr7-98805577-3	chr7	98805079	98806079	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-29533.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	54.92	29.49	29.6	70.85	44.32	25.72	48.58	34.05	13.74
Merged-chr13-37718530-3	chr13	37718015	37719015	+	975.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-107523.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	12.59	11.52	22.2	18.89	7.46	14.47	10.56	9.73	5.0
Merged-chr1-95449431-1	chr1	95448931	95449931	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135803.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	21.17	24.88	27.75	24.96	14.46	22.51	21.12	26.97	34.97
Merged-chr5-125305416-1	chr5	125304916	125305916	+	975.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	35678.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	15.45	8.29	26.82	12.82	12.13	4.82	20.07	12.38	3.75
Merged-chr9-118665676-2	chr9	118665181	118666181	+	975.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46011.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	295.75	204.59	198.87	319.14	204.33	241.94	276.72	290.06	137.4
Merged-chr2-152398107-4	chr2	152397519	152398519	+	975.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011438)	promoter-TSS (NM_011438)	27.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	41.19	22.12	40.7	29.69	11.2	9.65	31.69	13.71	14.99
Merged-chr7-75576391-3	chr7	75575891	75576891	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	120857.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	77.8	119.8	30.52	74.22	73.71	28.94	23.24	32.28	19.36
Merged-chr3-146118229-3	chr3	146117743	146118743	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3548.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	9.15	5.07	7.4	4.05	2.8	6.43	7.39	5.75	11.24
Merged-chr7-110557201-3	chr7	110556700	110557700	+	975.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	57720.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	25.74	18.43	20.35	18.89	16.33	30.54	13.73	14.59	19.98
Merged-chr2-166719514-3	chr2	166719003	166720003	+	975.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-5671.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	28.03	15.21	5.55	19.57	4.67	3.22	34.85	17.24	5.0
Merged-chr11-103346855-3	chr11	103346364	103347364	+	975.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045346, exon 3 of 4)	non-coding (NR_045346, exon 3 of 4)	2111.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	25.74	20.74	16.65	16.87	9.33	10.45	23.24	22.11	14.36
Merged-chr13-5420022-1	chr13	5419522	5420522	+	975.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	438070.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	14.3	9.22	13.87	10.12	10.26	10.45	7.39	2.21	12.49
Merged-chr3-135628590-3	chr3	135628088	135629088	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62959.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	76.08	72.8	44.4	56.68	44.32	59.48	63.37	64.11	64.33
Merged-chr6-145865572-3	chr6	145865085	145866085	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-165.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	71.51	47.0	26.82	199.04	181.01	126.19	31.69	25.65	3.12
Merged-chr19-10818724-3	chr19	10818224	10819224	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	intron (NM_009852, intron 1 of 12)	11334.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	12.01	6.91	7.4	10.12	2.8	3.22	14.79	8.84	9.37
Merged-chr5-66105567-3	chr5	66105069	66106069	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-7390.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	171.62	167.73	138.74	155.86	108.23	131.82	164.76	172.0	136.77
Merged-chr9-25539513-3	chr9	25539041	25540041	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	57944.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	17.16	9.68	10.17	18.22	7.46	7.23	9.51	10.61	5.62
Merged-chr13-51398855-3	chr13	51398349	51399349	+	975.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-9769.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	60.64	80.64	46.25	85.69	85.37	73.14	79.21	73.4	50.59
Merged-chr15-86272931-3	chr15	86272439	86273439	+	975.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	L1M4c|LINE|L1	-4736.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	165.9	214.73	156.32	207.14	263.11	138.25	159.48	182.62	105.55
Merged-chr13-100108063-3	chr13	100107551	100108551	+	975.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011353)	promoter-TSS (NM_011353)	32.0	NM_011353	20365.0	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	16.02	11.98	9.25	14.84	15.39	4.82	16.9	10.17	8.12
Merged-chr3-59264192-3	chr3	59263705	59264705	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 35 of 43)	intron (NM_177855, intron 35 of 43)	-1220.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	94.96	146.99	109.14	82.99	79.31	81.18	132.02	126.9	74.32
Merged-chr6-51525314-3	chr6	51524812	51525812	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	1052.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	60.64	62.21	59.2	55.33	52.25	45.01	60.2	61.9	54.33
Merged-chr12-102366233-3	chr12	102365726	102366726	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 5 of 9)	intron (NM_177620, intron 5 of 9)	73587.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	72.65	83.86	70.3	114.7	128.29	102.08	94.0	103.02	48.71
Merged-chr2-101679340-3	chr2	101678844	101679844	+	975.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303273, intron 1 of 6)	intron (NM_001303273, intron 1 of 6)	924.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	35.47	46.08	15.72	40.48	34.06	24.92	41.19	38.03	26.85
Merged-chr2-126675098-5	chr2	126674600	126675600	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	CpG	252.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	485.1	515.62	472.65	482.42	476.77	389.03	464.72	362.58	281.66
Merged-chr8-71381517-3	chr8	71381016	71382016	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010150, exon 1 of 4)	5' UTR (NM_010150, exon 1 of 4)	436.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	239.69	155.28	170.19	195.67	135.75	165.58	167.93	118.5	114.91
Merged-chr15-103393761-3	chr15	103393256	103394256	+	975.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26965.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	2.29	4.15	7.4	16.19	11.2	4.82	11.62	4.42	8.12
Merged-chr2-174110520-8	chr2	174110104	174111104	+	975.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213733, intron 1 of 11)	CpG	253.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	52.63	36.86	59.2	62.07	39.65	53.05	94.0	42.89	34.35
Merged-chr15-102192571-3	chr15	102192066	102193066	+	975.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359128, intron 3 of 15)	L2|LINE|L2	-3523.0	NM_144942	246277.0	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	14.3	7.37	23.12	18.89	19.59	41.8	13.73	7.96	22.48
Merged-chr2-4501837-3	chr2	4501337	4502337	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	HAL1|LINE|L1	-57917.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	48.62	68.2	51.8	76.24	46.18	65.91	89.78	85.78	37.47
Merged-chr8-122980077-3	chr8	122979582	122980582	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	62202.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	29.17	16.59	14.8	47.23	34.06	32.96	24.29	19.46	11.87
Merged-chr1-64367791-3	chr1	64367282	64368282	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165022.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	55.49	63.13	40.7	59.38	54.11	40.19	47.53	46.43	40.59
Merged-chr17-88063065-3	chr17	88062572	88063572	+	975.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	1860.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	51.48	49.3	35.15	76.24	54.11	31.35	63.37	80.03	26.85
Merged-chr5-90891239-4	chr5	90890693	90891693	+	975.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008176)	promoter-TSS (NM_008176)	-52.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	99.54	58.98	30.52	110.65	80.71	32.15	17.96	9.29	14.36
Merged-chr2-71529704-2	chr2	71529193	71530193	+	975.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002854)	TTS (NR_002854)	248.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	1.72	3.23	3.7	5.4	1.4	4.82	5.28	3.98	3.12
Merged-chrX-71555888-3	chrX	71555383	71556383	+	975.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293623)	promoter-TSS (NM_001293623)	-34.0	NM_001293624	15354.0	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.57	0.46	0.0	2.02	1.4	0.0	2.11	0.88	0.62
Merged-chr2-69861156-3	chr2	69860653	69861653	+	975.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355265)	promoter-TSS (NM_001355265)	-409.0	NM_001110145	20823.0	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	79.52	74.65	75.85	66.8	63.45	104.49	116.18	106.12	93.68
Merged-chr15-11972052-3	chr15	11971547	11972547	+	975.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4985.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	2.29	4.15	0.0	4.05	5.13	1.61	3.17	2.65	2.5
Merged-chr18-4336473-5	chr18	4335945	4336945	+	975.042419	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16508.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	89.81	99.53	86.02	79.62	73.24	73.14	116.18	107.89	72.45
Merged-chr2-148585899-3	chr2	148585409	148586409	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-86706.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	13.16	11.06	7.4	15.52	11.2	17.68	13.73	11.5	13.74
Merged-chr1-139068413-1	chr1	139067913	139068913	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 9 of 21)	GA-rich|Low_complexity|Low_complexity	90756.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.58	6.45	8.32	4.05	4.67	12.86	7.39	2.65	8.74
Merged-chrX-159802617-1	chrX	159802117	159803117	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 2 of 16)	intron (NM_021389, intron 2 of 16)	-37851.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	8.01	3.23	1.85	2.02	5.6	0.0	3.17	2.21	5.62
Merged-chr19-59052212-3	chr19	59051707	59052707	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 2 of 16)	intron (NM_001114312, intron 2 of 16)	23862.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	16.02	17.51	22.2	6.07	10.26	6.43	7.39	11.05	5.0
Merged-chr7-98793262-1	chr7	98792762	98793762	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41850.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.86	2.76	5.55	1.35	1.87	1.61	1.06	0.88	1.25
Merged-chr13-76396147-3	chr13	76395623	76396623	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	11162.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	14.3	12.9	9.25	14.84	15.39	18.49	2.11	5.75	3.75
Merged-chr3-131965676-1	chr3	131965176	131966176	+	975.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119616.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.86	4.15	1.85	4.05	6.53	0.0	5.28	2.65	5.62
Merged-chr4-155582438-1	chr4	155581938	155582938	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355599, intron 2 of 10)	intron (NM_001355599, intron 2 of 10)	18623.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	8.58	6.45	7.4	10.8	7.0	4.02	4.22	8.84	1.25
Merged-chr13-32965343-3	chr13	32964879	32965879	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011454)	promoter-TSS (NM_011454)	-134.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	26.31	36.4	24.97	31.04	22.39	8.04	39.08	20.34	13.74
Merged-chr10-26798183-1	chr10	26797683	26798683	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	25671.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	249.99	230.85	135.04	286.75	199.67	211.4	177.44	177.31	95.55
Merged-chr13-40844315-3	chr13	40843821	40844821	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15447.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	6.86	9.22	7.4	10.8	3.73	8.84	11.62	8.84	13.74
Merged-chr1-120449781-3	chr1	120449280	120450280	+	975.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55244.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	12.59	7.83	7.4	0.0	0.93	5.63	19.01	6.19	21.86
Merged-chr1-21014663-1	chr1	21014163	21015163	+	975.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177409, intron 2 of 10)	intron (NM_177409, intron 2 of 10)	63037.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	8.01	1.38	5.55	5.4	1.4	8.04	1.06	0.44	5.0
Merged-chr15-59145785-3	chr15	59145298	59146298	+	974.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63772.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	18.88	13.36	5.55	43.18	27.99	48.23	33.8	26.09	15.61
Merged-chr13-114885313-2	chr13	114884812	114885812	+	974.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008396, intron 3 of 29)	intron (NM_008396, intron 3 of 29)	46788.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	13.16	18.43	11.1	2.7	0.93	2.41	6.34	0.0	7.49
Merged-chr10-21622271-3	chr10	21621772	21622772	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	29127.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	75.51	72.8	58.27	96.48	99.83	68.32	145.75	126.46	47.46
Merged-chr16-33921658-3	chr16	33921169	33922169	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	45369.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	159.03	172.79	108.22	194.32	167.01	139.86	191.17	218.43	78.07
Merged-chr3-106496147-3	chr3	106495647	106496647	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	10107.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	37.76	55.75	47.17	33.74	36.39	52.25	27.46	25.2	36.85
Merged-chr2-166650625-3	chr2	166650121	166651121	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	63211.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	32.04	36.86	22.2	46.56	46.65	36.17	43.3	36.26	21.86
Merged-chr10-117209795-3	chr10	117209299	117210299	+	974.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14708.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	5.15	3.69	1.85	6.75	1.4	3.22	2.11	0.44	1.25
Merged-chr12-85192848-3	chr12	85192361	85193361	+	974.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15548.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	9.15	2.76	2.77	12.82	6.06	11.25	3.17	2.65	3.12
Merged-chr12-113031609-3	chr12	113031094	113032094	+	974.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	ORR1F|LTR|ERVL-MaLR	17086.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	37.76	56.68	69.37	34.41	20.99	48.23	38.02	30.07	20.61
Merged-chr7-114890302-3	chr7	114889795	114890795	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58355.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	18.88	23.96	30.52	17.54	14.46	37.78	11.62	5.75	8.74
Merged-chr13-10107516-3	chr13	10107023	10108023	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	MER105|DNA|DNA	253280.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	20.02	18.89	12.95	37.11	27.99	11.25	30.63	20.78	8.12
Merged-chr5-137333596-3	chr5	137333087	137334087	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031406)	promoter-TSS (NM_031406)	-5.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	28.6	20.74	27.75	20.92	21.93	46.62	36.97	40.24	18.74
Merged-chr5-113842014-3	chr5	113841524	113842524	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011779)	TTS (NM_011779)	-11523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	17.73	7.83	6.47	14.17	15.39	15.27	31.69	30.07	6.25
Merged-chr4-84545342-1	chr4	84544842	84545842	+	974.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172870, intron 2 of 5)	CpG	129744.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	1.14	3.69	0.0	1.35	2.8	3.22	2.11	7.07	2.5
Merged-chr2-120425021-3	chr2	120424539	120425539	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20923.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	80.66	94.46	57.35	114.7	123.62	81.99	105.62	124.69	88.06
Merged-chr5-150140664-3	chr5	150140174	150141174	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119256.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	1.72	3.69	6.47	8.77	3.73	9.65	2.11	6.19	6.25
Merged-chr15-80563827-3	chr15	80563338	80564338	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER46C|DNA|TcMar-Tigger	-3368.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	25.74	29.03	37.92	33.74	17.26	24.11	39.08	28.3	21.23
Merged-chr11-23305413-3	chr11	23304910	23305910	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1485.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	80.09	96.76	57.35	58.03	66.71	78.77	94.0	115.41	81.19
Merged-chr10-94552328-3	chr10	94551822	94552822	+	974.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	1402.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	49.77	35.48	50.87	64.1	39.65	47.42	47.53	55.27	38.72
Merged-chrUn_JH584304-5805-1	chrUn_JH584304	5305	6305	+	974.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	53884.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	34.85	32.72	0.0
Merged-chr8-10858083-3	chr8	10857582	10858582	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24372.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	12.01	3.69	2.77	13.49	5.6	3.22	1.06	3.1	8.12
Merged-chr8-35380120-3	chr8	35379618	35380618	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	4377.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	24.6	20.74	16.65	35.76	16.33	40.99	28.52	26.53	9.99
Merged-chr4-56222221-3	chr4	56221692	56222692	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	519233.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	58.35	72.34	44.4	47.23	51.78	46.62	76.05	77.38	34.97
Merged-chr15-57898135-3	chr15	57897623	57898623	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5705.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	6.86	6.45	1.85	16.87	7.46	15.27	10.56	15.48	9.37
Merged-chr17-67341672-3	chr17	67341192	67342192	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	12767.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	59.49	59.44	47.17	84.34	60.65	59.48	114.07	93.74	39.35
Merged-chr1-23867568-3	chr1	23867055	23868055	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290683, intron 4 of 9)	MTD|LTR|ERVL-MaLR	42181.0	NR_110972	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	33.75	37.78	25.9	22.94	24.26	19.29	22.18	23.43	34.35
Merged-chr9-57158279-3	chr9	57157791	57158791	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025417)	promoter-TSS (NM_025417)	8.0	NM_025417	66199.0	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	113.84	147.91	90.65	165.31	235.59	174.42	172.16	162.72	76.19
Merged-chr16-32533313-3	chr16	32532798	32533798	+	974.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37017.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	5.15	3.23	0.0	5.4	3.73	1.61	6.34	3.1	2.5
Merged-chr4-149698493-4	chr4	149697997	149698997	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008840, intron 1 of 24)	CpG	211.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	137.29	152.52	144.29	128.2	120.83	142.27	104.56	138.4	84.94
Merged-chr12-101740251-3	chr12	101739742	101740742	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21719.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	37.18	26.26	35.15	15.52	16.33	7.23	14.79	20.78	12.49
Merged-chr4-108459648-6	chr4	108459146	108460146	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 1 of 30)	CpG	220.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	269.44	243.29	221.99	250.99	265.91	204.16	402.41	317.48	186.11
Merged-chr8-90840220-3	chr8	90839711	90840711	+	974.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	MamRep605|LTR?|LTR?	11376.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	38.33	33.64	48.1	31.71	20.06	27.33	49.64	22.55	29.35
Merged-chr2-45047546-3	chr2	45047039	45048039	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-24362.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	85.24	63.13	37.92	89.06	51.78	82.79	86.61	74.28	55.58
Merged-chr11-68519559-3	chr11	68519046	68520046	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	16527.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	77.8	69.58	87.87	51.95	26.12	77.16	65.48	51.73	56.83
Merged-chr2-93167221-3	chr2	93166714	93167714	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20334.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	8.01	4.15	0.0	6.75	3.73	5.63	8.45	3.1	0.0
Merged-chr10-80114724-3	chr10	80114224	80115224	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1079.0	NM_001301853	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	147.02	125.79	164.64	93.79	74.64	109.32	138.36	167.58	115.54
Merged-chr3-52630380-3	chr3	52629875	52630875	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109349.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	12.59	11.52	12.02	14.17	8.86	24.11	10.56	5.31	14.99
Merged-chr10-100898694-3	chr10	100898208	100899208	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157073.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	3.43	5.53	0.0	7.42	8.4	6.43	6.34	3.1	3.12
Merged-chr10-88714967-3	chr10	88714464	88715464	+	974.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16137.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	46.91	33.64	26.82	52.63	32.66	28.94	55.98	50.85	24.98
Merged-chr9-64737118-3	chr9	64736585	64737585	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	671.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	328.36	319.78	377.38	352.2	346.15	329.55	317.91	359.92	251.68
Merged-chr19-43771658-3	chr19	43771150	43772150	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-10658.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	8.58	12.44	0.0	8.1	11.66	1.61	9.51	11.94	1.25
Merged-chr6-129532703-3	chr6	129532138	129533138	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020590)	promoter-TSS (NM_020590)	-554.0	NM_020590	57436.0	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	118.99	87.09	54.57	130.9	107.3	73.14	101.39	137.07	42.47
Merged-chr11-106664660-3	chr11	106664162	106665162	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	50619.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	104.69	77.87	112.84	74.89	42.45	79.58	61.26	65.88	66.82
Merged-chr16-37684883-3	chr16	37684390	37685390	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30522.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	21.74	21.2	5.55	10.8	11.66	15.27	12.67	7.52	5.62
Merged-chr9-90269453-1	chr9	90268953	90269953	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	1316.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	108.12	123.95	142.44	111.33	97.03	132.63	190.11	191.9	124.28
Merged-chrX-98554083-1	chrX	98553583	98554583	+	974.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001313754)	TTS (NM_001313754)	336942.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	4.58	10.14	3.7	4.05	12.13	12.06	6.34	1.33	8.12
Merged-chr7-59230577-3	chr7	59230066	59231066	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	1816.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	59.49	105.06	65.67	76.92	61.11	40.19	92.94	91.97	57.46
Merged-chr17-50675435-3	chr17	50674975	50675975	+	974.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 5 of 5)	intron (NM_013880, intron 5 of 5)	-23206.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	45.19	47.0	52.72	36.43	39.65	39.39	53.87	41.12	34.35
Merged-chr16-50752398-3	chr16	50751885	50752885	+	974.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19612.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	59.49	66.35	11.1	101.21	85.37	66.71	17.96	47.75	14.99
Merged-chr16-13373171-3	chr16	13372663	13373663	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	14742.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	29.17	30.41	13.87	38.46	32.19	21.7	26.4	24.76	13.74
Merged-chr12-99641106-3	chr12	99640600	99641600	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	49.2	31.33	25.9	38.46	33.12	30.54	84.49	83.13	68.7
Merged-chr15-79455606-3	chr15	79455105	79456105	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13462.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	105.83	94.0	64.75	111.33	88.64	98.06	121.46	132.65	68.07
Merged-chr5-151211067-3	chr5	151210553	151211553	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20860.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	117.27	161.27	98.97	168.0	121.29	94.85	271.44	270.16	116.16
Merged-chr4-115838393-3	chr4	115837899	115838899	+	974.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021461)	promoter-TSS (NM_021461)	-799.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	224.82	232.7	134.12	165.31	155.35	137.45	172.16	210.91	125.53
Merged-chr11-3150937-2	chr11	3150417	3151417	+	974.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	26896.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	26.89	40.55	75.85	56.68	42.45	79.58	0.0	1.33	83.69
Merged-chr3-69156145-3	chr3	69155648	69156648	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126533, intron 2 of 2)	B4A|SINE|B4	24915.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	177.34	227.17	110.07	188.25	203.86	142.27	267.21	313.94	143.02
Merged-chr10-59967374-3	chr10	59966879	59967879	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15609.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	21.74	22.58	34.22	26.31	23.79	21.7	20.07	12.82	33.1
Merged-chr4-40174456-3	chr4	40173968	40174968	+	974.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 4 of 20)	intron (NM_007386, intron 4 of 20)	31203.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	13.16	9.22	1.85	14.84	10.73	4.82	16.9	8.4	8.12
Merged-chr12-100432105-1	chr12	100431605	100432605	+	974.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	MTD|LTR|ERVL-MaLR	88717.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	6.29	4.61	4.62	11.47	7.46	12.86	0.0	1.33	3.75
Merged-chr18-32405492-3	chr18	32404998	32405998	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-27214.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	15.45	37.32	33.3	18.22	14.93	42.6	30.63	24.32	24.36
Merged-chr13-23530404-3	chr13	23529930	23530930	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153173)	promoter-TSS (NM_153173)	-614.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	232.25	306.42	177.59	178.13	182.4	137.45	192.23	292.27	142.39
Merged-chr6-118128202-3	chr6	118127699	118128699	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	10631.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	32.04	42.39	25.9	32.39	36.85	29.74	25.35	32.72	21.86
Merged-chr2-165453515-3	chr2	165453014	165454014	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	19683.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	13.73	17.97	25.9	18.89	12.6	14.47	19.01	23.43	18.11
Merged-chr5-96163027-2	chr5	96162517	96163517	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1027.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	233.97	251.59	103.59	230.08	269.18	153.52	237.64	276.8	151.76
Merged-chr11-74577227-1	chr11	74576727	74577727	+	974.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	12931.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	8.58	2.76	10.17	2.7	5.6	5.63	6.34	0.44	2.5
Merged-chr6-83017293-3	chr6	83016781	83017781	+	974.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	L3|LINE|CR1	16190.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	104.69	111.05	101.74	77.59	70.44	90.02	110.9	114.52	60.58
Merged-chr8-88282857-3	chr8	88282360	88283360	+	974.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109756)	promoter-TSS (NM_001109756)	-132.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	18.88	15.21	11.1	20.24	12.6	4.02	31.69	13.71	13.12
Merged-chr15-78591935-3	chr15	78591405	78592405	+	974.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5142.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	19.45	21.2	21.27	32.39	16.79	28.13	63.37	49.08	33.72
Merged-chr16-36072114-3	chr16	36071598	36072598	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027342)	promoter-TSS (NM_027342)	438.0	NM_001159421	381045.0	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	220.24	192.61	176.67	224.01	207.6	221.85	223.91	218.43	128.03
Merged-chr13-44415306-3	chr13	44414860	44415860	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-24367.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	72.08	96.3	100.82	59.38	95.63	90.83	106.67	118.5	68.7
Merged-chr7-73524588-3	chr7	73524108	73525108	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	17138.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	143.59	156.67	96.2	141.69	129.69	102.88	128.85	137.07	68.7
Merged-chr8-36347119-3	chr8	36346622	36347622	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97606.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.57	1.38	7.4	4.72	1.4	0.8	1.06	0.88	3.75
Merged-chr12-72336224-3	chr12	72335726	72336726	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	72828.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	8.58	6.45	3.7	11.47	2.8	1.61	21.12	19.01	4.37
Merged-chr5-150598978-3	chr5	150598462	150599462	+	974.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001362416)	TTS (NM_001362416)	-4437.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	248.27	271.4	154.47	210.51	200.13	181.66	290.45	329.41	137.4
Merged-chr2-23571915-4	chr2	23571414	23572414	+	974.4345089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001165997, exon 1 of 12)	5' UTR (NM_001165997, exon 1 of 12)	190.0	NM_029773	76857.0	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	49.2	43.31	38.85	51.28	48.52	77.97	72.88	42.45	39.97
Merged-chr5-16502111-2	chr5	16501593	16502593	+	974.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51402.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.72	8.75	7.4	12.14	10.73	4.82	5.28	7.07	2.5
Merged-chr11-88954980-3	chr11	88954477	88955477	+	974.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029023, intron 1 of 12)	intron (NM_029023, intron 1 of 12)	465.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	274.59	332.69	135.97	322.51	335.89	163.97	358.05	392.2	126.78
Merged-chr16-21787759-3	chr16	21787240	21788240	+	974.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023737)	promoter-TSS (NM_023737)	94.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	35.47	38.25	37.0	35.09	40.12	40.99	44.36	36.7	16.24
Merged-chr12-111732660-3	chr12	111732149	111733149	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	19380.0	NM_026511	68020.0	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	7.44	6.91	7.4	4.05	1.87	5.63	8.45	4.42	5.0
Merged-chr10-19937117-3	chr10	19936632	19937632	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	2606.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	93.82	72.8	37.0	57.35	37.32	32.96	33.8	22.99	20.61
Merged-chr17-57198465-3	chr17	57197958	57198958	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4277.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	8.58	4.15	9.25	10.8	4.2	6.43	10.56	2.65	9.99
Merged-chr18-80715480-3	chr18	80714971	80715971	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2400.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	17.73	10.14	0.0	13.49	6.53	7.23	8.45	2.21	3.75
Merged-chr2-121807112-3	chr2	121806611	121807611	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172673)	promoter-TSS (NM_172673)	-54.0	NM_172673	228564.0	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	4.58	1.38	3.7	3.37	1.87	1.61	3.17	0.88	2.5
Merged-chr2-84622975-3	chr2	84622507	84623507	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355067, intron 1 of 15)	intron (NM_001355067, intron 1 of 15)	26473.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	101.25	98.15	61.05	125.5	66.71	118.16	108.79	108.33	67.45
Merged-chr10-50612205-3	chr10	50611704	50612704	+	974.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	19535.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	9.72	8.75	3.7	11.47	15.39	9.65	13.73	15.03	8.74
Merged-chr17-24352799-2	chr17	24352301	24353301	+	974.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039581, intron 1 of 31)	intron (NM_001039581, intron 1 of 31)	778.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	123.56	166.34	111.92	147.09	152.55	156.74	61.26	51.29	40.59
Merged-chr3-152114979-1	chr3	152114479	152115479	+	974.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	50921.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	1.72	0.92	2.77	1.35	0.47	1.61	1.06	1.33	0.0
Merged-chr6-29940625-3	chr6	29940109	29941109	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037740, intron 16 of 20)	intron (NM_001037740, intron 16 of 20)	23596.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	12.59	7.83	7.4	4.72	4.67	6.43	4.22	6.63	4.37
Merged-chr17-29362493-3	chr17	29361982	29362982	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1568.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	40.04	44.7	46.25	37.11	36.39	57.87	43.3	63.67	44.97
Merged-chr2-102977415-3	chr2	102976912	102977912	+	974.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75747.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	164.18	161.27	80.47	248.3	141.82	167.19	286.23	262.65	129.28
Merged-chr10-99599561-1	chr10	99599061	99600061	+	974.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-9610.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.29	0.46	0.92	0.0	3.27	2.41	59.15	59.69	56.21
Merged-chr16-30070387-4	chr16	30069958	30070958	+	974.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5101.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	20.59	15.21	11.1	28.34	14.46	13.66	41.19	13.27	14.99
Merged-chr2-128058061-3	chr2	128057564	128058564	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-67974.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	11.44	7.37	10.17	5.4	10.26	8.04	4.22	6.63	8.74
Merged-chr16-95674603-3	chr16	95674095	95675095	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27812.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	14.87	8.29	5.55	10.8	10.26	8.04	13.73	4.86	7.49
Merged-chr3-110250204-3	chr3	110249713	110250713	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024139, exon 1 of 2)	non-coding (NR_024139, exon 1 of 2)	786.0	NM_178891	99890.0	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	85.24	61.75	85.1	70.85	132.95	116.55	68.65	86.22	58.71
Merged-chr5-140105949-3	chr5	140105454	140106454	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	68964.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	37.18	53.45	53.65	54.65	39.19	49.03	43.3	32.28	36.22
Merged-chr17-28207739-3	chr17	28207244	28208244	+	974.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027185)	promoter-TSS (NM_027185)	-34.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	49.2	28.57	27.75	53.3	69.04	42.6	20.07	15.48	9.99
Merged-chr3-30498711-1	chr3	30498211	30499211	+	974.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	intron (NM_001361034, intron 1 of 16)	10964.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	4.0	2.3	3.7	2.7	3.73	4.82	2.11	0.88	3.75
Merged-chr17-84141162-4	chr17	84140716	84141716	+	974.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46731.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	54.92	38.71	18.5	72.87	37.32	90.02	32.74	21.22	15.61
Merged-chr11-18011365-3	chr11	18010876	18011876	+	974.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57406.0	NR_131915	102633673.0	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	4.0	2.3	0.0	5.4	2.33	1.61	3.17	1.33	4.37
Merged-chr2-29623459-2	chr2	29622970	29623970	+	974.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	3750.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	255.14	251.59	175.74	242.9	204.33	132.63	207.01	238.33	126.15
Merged-chr11-87760970-7	chr11	87760532	87761532	+	974.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172449, exon 1 of 32)	5' UTR (NM_172449, exon 1 of 32)	491.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	24.03	4.15	5.55	4.05	3.73	3.22	7.39	3.54	6.25
Merged-chr11-23357513-3	chr11	23357034	23358034	+	974.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190401, intron 10 of 79)	intron (NM_001190401, intron 10 of 79)	50639.0	NM_001190401	17847.0	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	4.58	6.45	0.0	4.05	5.6	7.23	10.56	3.54	8.12
Merged-chr15-64061317-3	chr15	64060798	64061798	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-850.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	77.8	71.88	55.5	47.9	44.32	61.89	51.75	58.37	53.71
Merged-chr14-121973247-3	chr14	121972754	121973754	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-8061.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	5.72	2.3	0.0	6.75	3.73	1.61	6.34	2.65	4.37
Merged-chr16-46011078-3	chr16	46010557	46011557	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134480)	promoter-TSS (NM_001134480)	-644.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	54.92	64.97	7.4	62.75	96.1	55.46	51.75	56.6	27.48
Merged-chr1-185193743-3	chr1	185193236	185194236	+	974.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10432.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.01	4.15	1.85	9.45	9.8	4.02	6.34	7.52	0.0
Merged-chr7-129591978-3	chr7	129591483	129592483	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172255, exon 1 of 29)	exon (NM_172255, exon 1 of 29)	120.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	118.42	172.79	98.97	132.92	169.34	143.88	186.94	137.07	108.04
Merged-chr11-86603908-3	chr11	86603412	86604412	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-19754.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	83.52	111.97	67.52	68.15	60.65	94.04	94.0	101.26	84.94
Merged-chr5-102001112-3	chr5	102000599	102001599	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	68822.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	54.92	73.73	37.92	74.89	58.78	57.07	72.88	76.49	51.84
Merged-chr1-165762110-3	chr1	165761602	165762602	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-1656.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	34.32	25.8	36.07	38.46	30.32	36.97	46.47	35.82	41.84
Merged-chr2-27728140-3	chr2	27727635	27728635	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	17552.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	186.49	219.79	158.17	186.22	183.34	151.92	194.34	171.12	111.17
Merged-chr6-116666287-3	chr6	116665789	116666789	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	L1MA4|LINE|L1	7547.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	47.48	79.25	44.4	63.42	33.12	66.71	81.33	60.13	53.71
Merged-chr13-94630287-3	chr13	94629789	94630789	+	974.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158654.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	3.43	3.23	3.7	2.02	3.27	3.22	4.22	4.42	9.99
Merged-chr11-121228973-6	chr11	121228433	121229433	+	974.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001254735)	promoter-TSS (NM_001254735)	7.0	NM_001254735	217370.0	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	221.96	228.55	203.49	196.34	216.46	221.85	201.73	270.61	114.91
Merged-chr4-45530132-4	chr4	45529687	45530687	+	974.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033306, exon 1 of 6)	exon (NM_001033306, exon 1 of 6)	641.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	196.21	132.71	120.24	171.38	115.69	110.92	177.44	88.43	62.45
Merged-chr11-97661484-3	chr11	97660977	97661977	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1935.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	159.6	154.36	98.97	120.1	75.11	98.06	149.98	141.49	90.56
Merged-chr5-121596769-3	chr5	121596277	121597277	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-2953.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	151.59	172.79	105.44	140.34	144.15	147.09	128.85	168.47	89.31
Merged-chr4-32288685-5	chr4	32288186	32289186	+	974.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128749.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	85.24	84.32	86.95	78.27	107.76	81.18	28.52	44.66	39.35
Merged-chr12-87439140-3	chr12	87438662	87439662	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102565, intron 2 of 5)	intron (NM_001102565, intron 2 of 5)	-1405.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	38.33	52.07	33.3	33.06	49.45	38.58	45.42	53.06	39.35
Merged-chr11-40835835-3	chr11	40835347	40836347	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-80561.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	13.73	10.6	5.55	6.07	10.73	14.47	4.22	6.63	8.74
Merged-chr7-119921203-3	chr7	119920697	119921697	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21086.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	34.9	39.17	28.67	39.13	31.26	16.08	50.7	55.27	20.61
Merged-chr1-165669089-3	chr1	165668585	165669585	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-34544.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	22.31	20.74	23.12	22.94	19.59	28.94	22.18	18.13	23.73
Merged-chr15-102517234-3	chr15	102516735	102517735	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009582)	promoter-TSS (NM_009582)	-231.0	NM_009582	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	38.9	64.51	30.52	48.58	62.51	65.91	49.64	65.88	38.72
Merged-chr13-56711966-3	chr13	56711471	56712471	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	L1MB7|LINE|L1	8303.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	57.21	41.47	26.82	57.35	36.85	28.94	54.92	71.19	48.09
Merged-chr9-53704670-3	chr9	53704173	53705173	+	974.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	intron (NM_175562, intron 1 of 1)	1559.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	79.52	119.8	86.02	66.12	77.44	119.76	129.91	146.36	76.19
Merged-chr13-113875914-3	chr13	113875427	113876427	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	81419.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.0	5.99	10.17	8.77	5.13	4.82	7.39	5.75	9.37
Merged-chr10-81390016-3	chr10	81389503	81390503	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3061.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	36.04	23.04	33.3	33.74	27.99	32.96	46.47	39.35	18.11
Merged-chr17-69383997-8	chr17	69383470	69384470	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009547, exon 1 of 3)	5' UTR (NM_009547, exon 1 of 3)	166.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	167.04	112.89	145.22	144.39	112.43	156.74	163.71	103.91	73.69
Merged-chr14-58563303-3	chr14	58562809	58563809	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	490623.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	10.87	8.75	0.92	10.8	1.87	3.22	12.67	5.75	0.0
Merged-chr4-135922051-1	chr4	135921551	135922551	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	1325.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	60.64	53.45	42.55	16.19	28.92	15.27	20.07	34.93	11.87
Merged-chr7-68795791-1	chr7	68795291	68796291	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46553.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	4.58	3.23	11.1	8.77	7.0	8.04	8.45	2.65	3.75
Merged-chr19-40687390-3	chr19	40686889	40687889	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	27619.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	50.34	35.48	49.95	58.03	24.26	32.15	101.39	68.09	27.48
Merged-chrX-73580355-3	chrX	73579843	73580843	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59098.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	6.86	9.68	11.1	8.77	16.33	14.47	5.28	4.86	8.74
Merged-chr2-66120189-3	chr2	66119695	66120695	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 1 of 10)	intron (NM_015736, intron 1 of 10)	4598.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.86	11.06	7.4	10.8	5.13	6.43	4.22	4.86	3.75
Merged-chr15-83173054-1	chr15	83172554	83173554	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029787)	promoter-TSS (NM_029787)	-846.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	199.07	208.27	154.47	205.11	182.87	186.48	205.96	217.99	132.4
Merged-chr17-56257461-1	chr17	56256961	56257961	+	974.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010192, exon 1 of 1)	exon (NM_010192, exon 1 of 1)	668.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	81.23	56.22	51.8	64.1	53.65	48.23	81.33	50.85	46.22
Merged-chr4-28967892-3	chr4	28967394	28968394	+	974.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290434)	TTS (NM_001290434)	-100185.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	11.44	20.27	14.8	21.59	9.8	6.43	15.84	18.57	27.48
Merged-chr2-12327351-1	chr2	12326851	12327851	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25407.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	1.72	0.46	0.0	2.7	2.8	0.0	6.34	4.86	5.0
Merged-chr12-36317279-1	chr12	36316779	36317779	+	974.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025312, exon 2 of 2)	exon (NM_025312, exon 2 of 2)	3110.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	2.86	1.84	0.0	4.05	4.2	1.61	5.28	2.65	6.87
Merged-chr3-133623440-6	chr3	133622907	133623907	+	973.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79017.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	21.74	17.05	14.8	22.94	13.53	18.49	23.24	10.17	17.49
Merged-chr2-122153058-3	chr2	122152578	122153578	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009735)	TTS (NM_009735)	5391.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	17.16	20.74	25.9	29.01	14.46	38.58	32.74	33.16	25.61
Merged-chr16-38460251-3	chr16	38459736	38460736	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	1303.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	114.98	104.14	51.8	89.74	79.77	63.5	85.55	82.24	91.81
Merged-chr7-79496190-3	chr7	79495678	79496678	+	973.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3848.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.57	1.84	3.7	2.02	0.47	6.43	4.22	1.33	2.5
Merged-chr9-92457849-2	chr9	92457347	92458347	+	973.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_178711, exon 1 of 9)	5' UTR (NM_178711, exon 1 of 9)	469.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	6.86	17.05	3.7	26.31	25.19	26.53	14.79	3.54	1.25
Merged-chr15-78450289-3	chr15	78449777	78450777	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	18357.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	20.59	15.67	1.85	28.34	11.66	13.66	21.12	11.5	7.49
Merged-chr8-82401286-3	chr8	82400787	82401787	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	1299.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	77.23	106.9	74.92	80.29	77.91	77.97	189.06	208.7	72.45
Merged-chr6-131244682-3	chr6	131244172	131245172	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008462, intron 2 of 7)	intron (NM_008462, intron 2 of 7)	2690.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	54.35	88.93	49.95	70.17	74.64	86.81	52.81	69.42	49.34
Merged-chr10-34138251-3	chr10	34137744	34138744	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-10272.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	34.32	56.68	29.6	60.72	43.85	40.99	46.47	32.28	26.85
Merged-chr11-93729320-3	chr11	93728829	93729829	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	156437.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	9.15	10.6	16.65	18.89	13.06	11.25	13.73	18.13	12.49
Merged-chr17-87044594-3	chr17	87044109	87045109	+	973.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19048.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	3.43	7.37	2.77	10.8	4.2	1.61	8.45	4.42	3.75
Merged-chr4-84064836-2	chr4	84064322	84065322	+	973.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	4.0	5.99	4.62	8.77	1.4	6.43	1.06	0.44	3.12
Merged-chr10-60305439-3	chr10	60304944	60305944	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 65 of 68)	intron (NM_001252635, intron 65 of 68)	20983.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	17.73	8.29	7.4	8.77	5.13	16.08	9.51	4.86	6.25
Merged-chr1-38902766-1	chr1	38902266	38903266	+	973.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4606.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	2.86	2.76	3.7	6.75	5.6	8.04	2.11	0.88	5.0
Merged-chr14-25646296-3	chr14	25645792	25646792	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310666, intron 10 of 23)	intron (NM_001310666, intron 10 of 23)	42779.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	13.73	9.22	24.97	30.36	17.73	24.11	16.9	6.63	6.25
Merged-chr18-32389854-3	chr18	32389362	32390362	+	973.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11578.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	32.61	35.02	38.85	41.83	24.72	38.58	22.18	22.55	23.73
Merged-chr19-32912127-1	chr19	32911627	32912627	+	973.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31C_MM|LTR|ERVK	154550.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.01	7.83	3.7	2.02	7.46	4.02	21.12	30.07	31.85
Merged-chr9-61371399-3	chr9	61370870	61371870	+	973.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083927)	promoter-TSS (NM_001083927)	-996.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	173.33	212.88	115.62	151.81	157.68	193.71	172.16	208.7	109.29
Merged-chr13-23816310-3	chr13	23815801	23816801	+	973.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144836, intron 5 of 11)	intron (NM_144836, intron 5 of 11)	9274.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	8.01	2.76	5.55	6.75	7.46	3.22	3.17	6.63	3.75
Merged-chr10-7600803-3	chr10	7600307	7601307	+	973.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359742, intron 3 of 5)	intron (NM_001359742, intron 3 of 5)	11007.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	9.15	3.23	5.55	9.45	5.13	4.82	12.67	5.31	11.24
Merged-chr12-111670944-3	chr12	111670463	111671463	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021273, exon 5 of 8)	exon (NM_021273, exon 5 of 8)	1375.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	105.83	95.38	71.22	88.39	76.97	65.91	77.1	79.59	51.21
Merged-chr11-117413350-3	chr11	117412858	117413858	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1031.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	10.3	3.23	1.85	10.8	3.73	1.61	3.17	3.98	3.12
Merged-chr17-28528185-3	chr17	28527683	28528683	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	11.44	5.53	7.4	10.8	6.06	10.45	8.45	2.21	2.5
Merged-chr2-156730639-3	chr2	156730141	156731141	+	973.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	9362.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	137.29	135.01	142.44	149.79	139.02	145.49	100.34	115.41	108.04
Merged-chr10-25426704-3	chr10	25426224	25427224	+	973.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	18356.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	15.45	17.97	20.35	12.14	10.26	6.43	13.73	7.52	6.25
Merged-chr10-57796286-3	chr10	57795748	57796748	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020561, intron 1 of 7)	intron (NM_020561, intron 1 of 7)	1704.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	128.14	149.75	56.42	145.74	132.49	102.88	154.2	180.85	83.69
Merged-chr10-128176663-3	chr10	128176168	128177168	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019711)	promoter-TSS (NM_019711)	-100.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	136.72	134.55	59.2	134.94	118.03	78.77	145.75	156.09	77.44
Merged-chr6-148561294-3	chr6	148560781	148561781	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53028.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	10.87	8.29	16.65	12.14	10.73	12.06	9.51	15.03	11.24
Merged-chr16-12090387-3	chr16	12089950	12090950	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	106337.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	24.6	23.5	32.37	21.59	14.0	17.68	28.52	25.65	17.49
Merged-chr5-4876778-3	chr5	4876288	4877288	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-118572.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	16.02	13.82	14.8	28.34	34.06	31.35	25.35	27.41	21.23
Merged-chr13-55510555-3	chr13	55510072	55511072	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114088, intron 2 of 12)	intron (NM_001114088, intron 2 of 12)	2874.0	NM_026131	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	16.02	11.06	3.7	9.45	9.33	10.45	14.79	9.73	2.5
Merged-chr19-55227283-3	chr19	55226768	55227768	+	973.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 8 of 20)	intron (NM_001081076, intron 8 of 20)	13968.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	14.87	13.36	6.47	22.94	5.13	20.09	8.45	10.61	13.74
Merged-chr10-53597614-4	chr10	53597004	53598004	+	973.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025541, intron 1 of 3)	CpG	543.0	NM_025541	66403.0	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	169.33	115.2	139.67	163.28	125.02	102.88	184.83	113.19	83.06
Merged-chr16-50430441-6	chr16	50429806	50430806	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	CpG	2083.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	89.24	58.52	48.1	112.0	51.78	30.54	87.66	62.79	29.98
Merged-chr11-116811823-3	chr11	116811319	116812319	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16227.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	16.59	15.67	12.02	21.59	9.8	15.27	6.34	4.42	10.62
Merged-chr9-72449619-1	chr9	72449119	72450119	+	973.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008613, intron 7 of 9)	intron (NM_008613, intron 7 of 9)	11090.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	4.0	5.07	3.7	6.07	3.27	4.82	24.29	38.47	17.49
Merged-chr4-115063270-1	chr4	115062770	115063770	+	973.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001287388, exon 3 of 5)	exon (NM_001287388, exon 3 of 5)	5459.0	NM_001287388	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	2.29	3.23	0.0	0.67	0.93	3.22	1.06	3.98	0.0
Merged-chr14-76194390-3	chr14	76193879	76194879	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57083.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	17.73	11.06	12.02	16.87	11.2	20.09	17.96	8.84	6.25
Merged-chrX-10719149-3	chrX	10718638	10719638	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001166635, exon 2 of 2)	3' UTR (NM_001166635, exon 2 of 2)	1773.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	77.8	79.25	51.8	75.57	41.99	62.7	90.83	99.49	53.08
Merged-chr11-53803275-3	chr11	53802765	53803765	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	32792.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	61.78	35.48	5.55	32.39	12.6	16.08	38.02	18.13	11.24
Merged-chr1-180265052-3	chr1	180264569	180265569	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	48.05	27.65	31.45	49.93	20.53	28.94	25.35	35.82	21.23
Merged-chr11-60802723-1	chr11	60802223	60803223	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	RMER6B|LTR|ERVK	8542.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	27.46	41.01	46.25	19.57	13.53	35.37	28.52	27.86	13.74
Merged-chr13-117048602-3	chr13	117048112	117049112	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1N2|LTR|ERVL-MaLR	-23096.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	17.16	12.44	9.25	21.59	12.13	19.29	19.01	10.17	18.74
Merged-chr13-93771684-3	chr13	93771135	93772135	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009712)	promoter-TSS (NM_009712)	-44.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	36.04	20.27	12.95	56.68	48.05	63.5	26.4	19.01	11.87
Merged-chr14-62840691-3	chr14	62840205	62841205	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2984.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	70.93	82.48	51.8	82.99	49.45	69.13	83.44	103.47	86.81
Merged-chr9-65361138-3	chr9	65360625	65361625	+	973.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111145)	promoter-TSS (NM_001111145)	65.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	188.21	177.86	118.39	201.07	142.29	152.72	135.19	153.87	89.31
Merged-chr11-95712169-3	chr11	95711624	95712624	+	973.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045780, intron 1 of 1)	intron (NR_045780, intron 1 of 1)	630.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	69.79	35.48	75.85	93.79	73.24	97.26	89.78	93.3	65.58
Merged-chr5-123755433-3	chr5	123754905	123755905	+	973.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042421, intron 2 of 63)	intron (NM_001042421, intron 2 of 63)	5679.0	NM_001042421	208628.0	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	73.22	59.9	24.05	86.36	61.58	37.78	129.91	138.4	66.82
Merged-chr6-118479421-1	chr6	118478921	118479921	+	973.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011763)	promoter-TSS (NM_011763)	-148.0	NM_011763	22750.0	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	2.29	2.3	0.0	22.94	11.66	13.66	2.11	0.44	3.75
Merged-chr15-75835662-3	chr15	75835158	75836158	+	973.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172121, intron 3 of 11)	intron (NM_172121, intron 3 of 11)	6250.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	7.44	2.76	12.02	1.35	3.73	2.41	4.22	3.54	5.0
Merged-chr11-21567905-3	chr11	21567409	21568409	+	973.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	4025.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	69.79	99.07	45.32	62.75	62.98	32.15	88.72	121.6	48.71
Merged-chr17-14990269-2	chr17	14989780	14990780	+	973.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001123370, intron 11 of 11)	intron (NM_001123370, intron 11 of 11)	11416.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	43.48	38.71	43.47	13.49	13.06	12.06	24.29	18.13	3.12
Merged-chr11-74826345-2	chr11	74825843	74826843	+	973.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4581.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	69.22	56.22	52.72	99.18	132.95	148.7	53.87	59.25	44.34
Merged-chr6-149565978-3	chr6	149565468	149566468	+	973.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360951)	promoter-TSS (NM_001360951)	-114.0	NM_001360951	436100.0		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	3.43	4.61	3.7	6.75	9.8	4.82	8.45	5.75	8.74
Merged-chr6-134152145-3	chr6	134151631	134152631	+	973.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	116431.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	18.88	17.05	25.9	21.59	10.26	20.09	25.35	15.03	9.99
Merged-chr12-70113001-3	chr12	70112489	70113489	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104397)	promoter-TSS (NR_104397)	-954.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	48.05	38.25	37.92	41.16	31.26	45.82	40.14	53.5	30.6
Merged-chr5-72891700-3	chr5	72891199	72892199	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22663.0	NM_001113423	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	3.43	1.38	5.55	4.72	1.4	1.61	1.06	2.65	2.5
Merged-chr1-153510561-3	chr1	153510067	153511067	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 10 of 11)	intron (NM_028749, intron 10 of 11)	-22907.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	16.02	17.51	10.17	8.1	9.33	9.65	22.18	16.8	17.49
Merged-chr4-41555401-3	chr4	41554904	41555904	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	14123.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	26.89	14.75	12.95	31.71	19.13	22.51	142.59	112.75	53.08
Merged-chr11-75168947-6	chr11	75168516	75169516	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	-864.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	117.84	102.75	192.39	124.15	80.24	122.98	174.27	122.04	106.79
Merged-chr2-132111537-3	chr2	132111041	132112041	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	33567.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	118.42	102.75	52.72	110.65	83.51	73.95	115.12	148.57	42.47
Merged-chr10-93567273-3	chr10	93566774	93567774	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359749, intron 5 of 13)	intron (NM_001359749, intron 5 of 13)	12393.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	4.0	4.61	5.55	6.07	3.73	1.61	5.28	1.33	2.5
Merged-chr5-123832484-3	chr5	123832011	123833011	+	973.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33005.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	8.01	15.21	0.0	25.64	15.86	11.25	60.2	57.92	18.74
Merged-chr7-38182737-3	chr7	38182225	38183225	+	973.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085385)	promoter-TSS (NM_001085385)	-492.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	15.45	14.28	15.72	20.92	6.53	26.53	33.8	29.18	18.11
Merged-chr5-5186290-3	chr5	5185818	5186818	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	79750.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	53.77	47.0	28.67	45.21	46.65	45.01	55.98	47.75	36.85
Merged-chr11-120307745-3	chr11	120307242	120308242	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39671.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	2.29	5.53	7.4	3.37	7.93	6.43	5.28	2.65	2.5
Merged-chr18-88838390-3	chr18	88837843	88838843	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	55864.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	10.87	7.37	7.4	6.75	7.0	18.49	9.51	11.94	12.49
Merged-chr9-94278821-2	chr9	94278302	94279302	+	973.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	259279.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	6.29	2.3	1.85	2.02	5.6	4.02	2.11	5.31	2.5
Merged-chr4-99929926-3	chr4	99929440	99930440	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	CpG	489.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	74.37	52.99	71.22	78.27	87.24	104.49	108.79	75.61	45.59
Merged-chr13-111777388-1	chr13	111776888	111777888	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	31605.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	10.87	8.29	6.47	7.42	2.33	8.04	4.22	7.52	6.87
Merged-chr12-101758850-3	chr12	101758378	101759378	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-40355.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	22.88	22.12	29.6	18.89	13.53	12.06	31.69	33.6	16.24
Merged-chr16-23307626-3	chr16	23307092	23308092	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	17122.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	42.9	40.09	21.27	70.85	44.32	69.13	52.81	39.35	39.35
Merged-chr11-32560580-3	chr11	32560081	32561081	+	973.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	27315.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	124.14	130.4	88.8	145.74	130.62	133.43	138.36	165.81	79.94
Merged-chr9-35421448-3	chr9	35420937	35421937	+	973.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-30639.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	7.44	2.3	2.77	3.37	1.87	1.61	3.17	0.88	2.5
Merged-chr17-23592745-3	chr17	23592234	23593234	+	973.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011747, intron 1 of 5)	CpG	-6482.0	NM_001356268	22654.0	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	AI835008|Krox-8|Zfp-13	zinc finger protein 13	protein-coding	4.58	2.76	8.32	6.07	0.93	1.61	6.34	3.1	7.49
Merged-chr11-76859463-3	chr11	76858951	76859951	+	973.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12443.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	3.43	4.61	0.0	12.14	4.67	4.82	5.28	2.21	2.5
Merged-chr14-54360994-5	chr14	54360501	54361501	+	973.4400019999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026936, intron 1 of 9)	CpG	160.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	284.88	293.98	236.79	306.32	338.69	286.95	296.79	316.59	133.02
Merged-chr4-136450014-3	chr4	136449510	136450510	+	973.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-19751.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	82.38	65.43	44.4	143.71	100.77	90.83	36.97	14.15	8.12
Merged-chr7-70099219-2	chr7	70098724	70099724	+	973.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	238598.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	1.72	2.76	0.0	3.37	5.13	0.0	5.28	2.21	11.24
Merged-chr15-62401322-5	chr15	62400805	62401805	+	973.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-181854.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	23.45	35.02	22.2	41.16	32.19	32.15	40.14	17.24	14.99
Merged-chr16-16574692-3	chr16	16574202	16575202	+	973.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	-14483.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	45.19	52.53	36.07	47.9	28.92	40.99	38.02	50.85	34.97
Merged-chr2-11391096-3	chr2	11390556	11391556	+	973.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	7444.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	10.3	10.6	3.7	15.52	22.39	23.31	19.01	23.43	11.24
Merged-chr12-46870257-3	chr12	46869757	46870757	+	973.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51482.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	5.15	6.45	7.4	20.92	5.13	12.06	11.62	4.42	2.5
Merged-chr11-117483063-2	chr11	117482562	117483562	+	973.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	7.44	6.45	0.0	22.27	11.66	25.72	7.39	5.31	11.87
Merged-chr10-4456608-2	chr10	4456106	4457106	+	973.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	24001.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	3.43	1.84	3.7	0.67	2.33	1.61	2.11	2.65	3.75
Merged-chr8-122559249-3	chr8	122558741	122559741	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7912.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	33.18	35.02	42.55	29.69	28.46	61.89	33.8	29.18	31.23
Merged-chr4-150474977-3	chr4	150474484	150475484	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	177190.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	54.35	49.76	37.92	76.24	56.45	54.66	32.74	40.24	35.6
Merged-chr1-120093705-3	chr1	120093223	120094223	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19943.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	2.29	1.84	7.4	3.37	1.4	1.61	1.06	4.42	2.5
Merged-chr3-31342763-3	chr3	31342261	31343261	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32442.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	10.3	8.29	4.62	11.47	8.86	8.04	6.34	8.84	3.75
Merged-chr8-119784457-3	chr8	119783961	119784961	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6045.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	32.04	18.43	27.75	22.94	20.99	19.29	22.18	22.55	10.62
Merged-chr4-57953019-3	chr4	57952524	57953524	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	3387.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	131.57	135.01	103.59	145.06	103.56	85.2	176.38	214.89	130.53
Merged-chrX-48521831-1	chrX	48521331	48522331	+	973.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	2546.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	1.72	0.0	3.7	11.47	5.6	8.04	3.17	0.88	0.0
Merged-chr19-41830295-3	chr19	41829807	41830807	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008043, exon 1 of 1)	exon (NM_008043, exon 1 of 1)	337.0	NM_008043	14296.0	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	72.65	55.75	79.55	66.8	36.85	50.64	166.88	86.22	94.3
Merged-chr5-124582713-3	chr5	124582221	124583221	+	973.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181410, intron 2 of 12)	intron (NM_181410, intron 2 of 12)	3573.0	NM_181410	209357.0	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	5.15	7.37	9.25	11.47	4.2	3.22	10.56	6.19	7.49
Merged-chr9-121919154-3	chr9	121918648	121919648	+	973.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2843.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	9.15	12.9	5.55	7.42	11.2	7.23	7.39	3.98	6.25
Merged-chr12-99576102-3	chr12	99575601	99576601	+	973.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 2 of 3)	intron (NR_136760, intron 2 of 3)	12260.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	40.62	48.38	30.52	41.83	48.52	29.74	53.87	47.31	39.35
Merged-chr15-31342155-2	chr15	31341643	31342643	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	25616.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	12.01	7.83	29.6	47.9	37.79	28.94	21.12	11.5	5.0
Merged-chr17-35780521-3	chr17	35780000	35781000	+	973.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045459, exon 3 of 3)	non-coding (NR_045459, exon 3 of 3)	8050.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	14.3	12.44	1.85	19.57	6.06	6.43	25.35	27.41	16.24
Merged-chr4-126110196-2	chr4	126109734	126110734	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	6277.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	260.86	231.31	171.12	172.05	98.9	86.01	140.47	149.45	73.69
Merged-chr13-112427644-2	chr13	112427151	112428151	+	973.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36419.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	6.29	4.15	3.7	6.75	7.0	1.61	11.62	4.42	6.25
Merged-chr18-12640674-3	chr18	12640158	12641158	+	973.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	14.87	14.75	14.8	9.45	5.6	12.86	22.18	23.88	21.86
Merged-chr2-60020037-3	chr2	60019520	60020520	+	973.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	105720.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	83.52	87.55	75.85	86.36	64.38	69.13	64.43	72.52	38.1
Merged-chr1-131963126-4	chr1	131962574	131963574	+	973.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	CpG	159.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	147.02	125.79	174.82	187.57	195.47	176.83	140.47	120.27	93.68
Merged-chr8-11479267-5	chr8	11478809	11479809	+	973.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011227)	promoter-TSS (NM_011227)	-810.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	61.21	66.35	74.92	60.72	57.85	54.66	65.48	46.87	38.1
Merged-chr13-23799553-3	chr13	23799062	23800062	+	973.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_144836	218103.0	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	8.58	10.14	0.0	13.49	6.53	12.86	6.34	7.96	1.87
Merged-chr4-47378885-3	chr4	47378385	47379385	+	973.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312868, intron 1 of 8)	MTC|LTR|ERVL-MaLR	-7331.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	20.02	22.12	16.65	20.92	17.73	23.31	22.18	19.46	8.74
Merged-chr8-81345353-2	chr8	81344864	81345864	+	973.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	2802.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	16.59	26.73	16.65	15.52	18.66	11.25	1.06	5.75	2.5
Merged-chr3-145938522-2	chr3	145938032	145939032	+	973.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025555, intron 1 of 2)	CpG	518.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	135.58	117.96	104.52	159.23	118.03	106.1	153.15	86.66	86.81
Merged-chr17-63499730-7	chr17	63499106	63500106	+	973.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015794, exon 1 of 9)	exon (NM_015794, exon 1 of 9)	974.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	142.44	111.05	145.22	131.57	102.63	118.96	135.19	65.44	81.19
Merged-chr2-6213161-4	chr2	6212674	6213674	+	973.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024208)	promoter-TSS (NM_024208)	-180.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	32.04	14.75	4.62	26.99	14.46	6.43	8.45	5.31	1.25
Merged-chr18-61643872-3	chr18	61643385	61644385	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045420, intron 1 of 2)	intron (NR_045420, intron 1 of 2)	4009.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	6.29	4.61	2.77	11.47	2.33	1.61	5.28	1.77	1.25
Merged-chr14-25474158-3	chr14	25473667	25474667	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14982.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	258.0	164.96	162.79	249.65	168.41	149.5	212.29	204.28	82.44
Merged-chr2-127323146-3	chr2	127322635	127323635	+	973.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13024.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	23.45	15.67	19.42	8.1	10.26	15.27	13.73	18.57	19.98
Merged-chr7-101538728-3	chr7	101538230	101539230	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17072.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	121.28	89.39	76.77	108.63	69.51	75.56	55.98	67.21	34.97
Merged-chr18-34963632-3	chr18	34963136	34964136	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9285.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	20.59	14.75	13.87	9.45	7.93	11.25	23.24	26.09	19.98
Merged-chr12-3698193-3	chr12	3697700	3698700	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	B4|SINE|B4	-108780.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	34.32	49.3	53.65	49.93	30.79	45.01	66.54	79.15	53.08
Merged-chr7-111383881-3	chr7	111383380	111384380	+	973.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-261205.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	11.44	11.06	7.4	8.77	11.66	11.25	33.8	40.24	19.98
Merged-chr11-93963194-2	chr11	93962687	93963687	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008704, intron 3 of 4)	intron (NM_008704, intron 3 of 4)	5334.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	3.43	1.38	2.77	10.8	5.13	11.25	4.22	7.52	8.12
Merged-chrX-12091948-3	chrX	12091465	12092465	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-11412.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	60.64	47.92	49.02	58.03	43.85	67.52	55.98	34.05	24.36
Merged-chr1-172552905-1	chr1	172552405	172553405	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2099.0	NR_040558	71319.0	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	9.15	1.84	5.55	7.42	2.33	4.02	15.84	10.17	9.99
Merged-chr5-125380058-2	chr5	125379558	125380558	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9959.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	21.74	13.36	12.02	8.77	6.06	14.47	6.34	4.42	7.49
Merged-chr9-98329748-3	chr9	98329263	98330263	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33193.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	36.61	43.77	25.9	91.09	91.9	57.07	57.03	56.16	25.61
Merged-chrUn_JH584304-18227-1	chrUn_JH584304	17727	18727	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	41462.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	52.81	44.22	0.0
Merged-chr17-57277000-3	chr17	57276487	57277487	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2113.0	NM_001163816	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	52.63	47.0	62.9	59.38	39.65	56.27	49.64	91.53	34.35
Merged-chr9-32020063-1	chr9	32019563	32020563	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-96073.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	2.86	2.76	5.55	2.02	1.4	4.82	6.34	2.65	3.75
Merged-chr14-118504631-1	chr14	118504131	118505131	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	87841.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	5.15	5.99	5.55	5.4	3.27	2.41	5.28	5.31	0.0
Merged-chr6-81986746-1	chr6	81986246	81987246	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-20797.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	8.58	3.23	4.62	12.82	6.06	0.0	3.17	0.88	1.25
Merged-chr7-118468349-1	chr7	118467849	118468849	+	973.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-20127.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	2.86	2.3	1.85	0.0	0.93	1.61	15.84	2.65	21.86
Merged-chr6-122602775-2	chr6	122602259	122603259	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-315.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	145.3	146.53	115.62	135.62	115.69	113.33	210.18	234.79	88.06
Merged-chr17-50345330-3	chr17	50344823	50345823	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-51703.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	9.72	6.45	3.7	11.47	6.06	0.8	6.34	3.54	2.5
Merged-chr18-75307042-3	chr18	75306678	75307678	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-9849.0	NR_045393	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	21.74	16.59	15.72	22.94	17.73	18.49	20.07	20.78	11.87
Merged-chr7-3400092-1	chr7	3399592	3400592	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133190, intron 1 of 3)	MIR|SINE|MIR	6050.0	NM_133190	81905.0	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	7.44	5.53	14.8	0.67	1.87	3.22	5.28	7.07	6.25
Merged-chr1-84286933-1	chr1	84286433	84287433	+	973.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	2.86	4.15	7.4	5.4	2.8	8.84	7.39	1.77	6.25
Merged-chr8-125543321-2	chr8	125542798	125543798	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	26565.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	18.31	14.75	22.2	46.56	23.33	21.7	8.45	0.88	6.87
Merged-chr11-97428289-3	chr11	97427784	97428784	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21876.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	12.01	5.07	3.7	12.82	5.6	1.61	4.22	7.07	2.5
Merged-chr13-104610621-4	chr13	104610163	104611163	+	973.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	206290.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	85.24	64.05	39.77	66.8	65.31	61.09	107.73	116.73	93.68
Merged-chr2-19415204-3	chr2	19414719	19415719	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30444.0	NM_018809	19213.0	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	5.15	4.61	1.85	6.75	3.27	0.0	3.17	2.21	3.75
Merged-chr19-56797543-3	chr19	56797042	56798042	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170757, exon 11 of 15)	exon (NM_170757, exon 11 of 15)	16141.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	9.15	14.75	14.8	12.14	11.2	16.08	8.45	2.65	11.24
Merged-chr18-5680340-3	chr18	5679814	5680814	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	Lx9|LINE|L1	87667.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	12.59	11.98	18.5	10.8	5.13	4.82	13.73	8.84	11.24
Merged-chr10-81175185-3	chr10	81174706	81175706	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_007907	13629.0	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	20.02	29.49	28.67	26.31	26.12	24.11	24.29	31.39	14.36
Merged-chr1-170959973-3	chr1	170959484	170960484	+	972.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010187)	TTS (NM_010187)	16087.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	27.46	20.27	11.1	24.29	15.39	28.13	33.8	22.55	28.73
Merged-chr3-9342262-2	chr3	9341760	9342760	+	972.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60818.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	16.02	23.5	19.42	35.76	20.06	29.74	2.11	3.98	6.25
Merged-chr10-44457332-2	chr10	44456818	44457818	+	972.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 1 of 6)	intron (NM_007548, intron 1 of 6)	1430.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	46.91	63.13	61.97	58.03	54.58	72.34	62.31	47.31	44.34
Merged-chr9-40743834-3	chr9	40743286	40744286	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-57487.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	167.04	201.82	125.79	197.69	156.28	127.8	33.8	23.43	12.49
Merged-chr2-6721188-3	chr2	6720708	6721708	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	454.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	253.42	317.94	183.14	240.87	251.45	177.64	234.47	309.07	187.36
Merged-chr5-148739330-3	chr5	148738839	148739839	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2501.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	5.72	1.38	2.77	6.75	4.2	16.88	32.74	21.67	36.22
Merged-chr14-30043513-3	chr14	30043011	30044011	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 45 of 46)	intron (NM_001083616, intron 45 of 46)	20878.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	11.44	3.69	8.32	8.1	3.73	1.61	8.45	6.63	12.49
Merged-chr2-50539959-3	chr2	50539455	50540455	+	972.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	184930.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	3.43	6.91	3.7	0.67	9.33	4.02	6.34	6.63	3.75
Merged-chr5-122209955-2	chr5	122209460	122210460	+	972.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028752)	promoter-TSS (NM_028752)	-179.0	NM_001359454	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	20.02	6.91	8.32	45.21	21.93	6.43	9.51	4.42	3.75
Merged-chr15-84685670-2	chr15	84685171	84686171	+	972.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146061, intron 1 of 7)	intron (NM_146061, intron 1 of 7)	4673.0	NM_146061	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	9.15	10.14	14.8	12.82	5.6	4.02	1.06	1.33	5.62
Merged-chr10-80420827-2	chr10	80420348	80421348	+	972.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164153, intron 5 of 18)	intron (NM_001164153, intron 5 of 18)	12805.0	NM_001164150	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	17.73	17.05	21.27	41.16	35.45	22.51	82.38	67.65	28.1
Merged-chr10-21827621-3	chr10	21827114	21828114	+	972.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54570.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	81.8	68.2	57.35	94.46	77.44	111.73	97.17	109.66	54.33
Merged-chr5-135913413-3	chr5	135912903	135913903	+	972.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	MTD|LTR|ERVL-MaLR	21238.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	101.83	80.64	74.0	126.85	119.89	115.75	104.56	113.19	58.71
Merged-chr4-40823781-3	chr4	40823279	40824279	+	972.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	26359.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	11.44	11.98	5.55	26.31	7.46	11.25	23.24	16.36	10.62
Merged-chr2-62461001-3	chr2	62460487	62461487	+	972.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22666.0	NM_008100	14526.0	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	14.3	8.29	3.7	5.4	5.13	17.68	15.84	5.31	5.62
Merged-chr19-47461641-2	chr19	47461136	47462136	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	2775.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	68.65	33.18	22.2	105.26	76.04	60.28	9.51	5.75	2.5
Merged-chr7-122257021-4	chr7	122256571	122257571	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32054.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	18.88	20.74	38.85	56.68	45.25	53.85	35.91	36.7	37.47
Merged-chr7-67985219-3	chr7	67984718	67985718	+	972.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	L1MB3|LINE|L1	32961.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	7.44	4.61	11.1	6.07	3.27	1.61	2.11	0.88	4.37
Merged-chr2-71315518-3	chr2	71315030	71316030	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 5 of 17)	intron (NM_172436, intron 5 of 17)	52024.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	90.38	83.86	80.47	26.31	41.52	45.01	54.92	53.5	36.22
Merged-chr12-85424064-3	chr12	85423549	85424549	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49332.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	12.01	7.83	3.7	12.82	4.2	2.41	3.17	3.98	4.37
Merged-chr11-115192338-3	chr11	115191844	115192844	+	972.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 2 of 9)	intron (NM_001033393, intron 2 of 9)	4857.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	82.38	64.05	40.7	147.76	80.24	69.93	177.44	203.84	130.53
Merged-chr6-134115149-3	chr6	134114659	134115659	+	972.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	79459.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	51.48	63.59	53.65	57.35	48.05	50.64	96.11	90.64	71.82
Merged-chr14-120324472-3	chr14	120323986	120324986	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	18034.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	35.47	24.88	11.1	41.16	26.59	26.53	60.2	42.01	31.85
Merged-chr2-32590407-3	chr2	32589904	32590904	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	3326.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	56.06	40.09	37.92	47.23	27.06	40.19	85.55	53.94	28.1
Merged-chr12-52851003-3	chr12	52850512	52851512	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151629.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	29.17	17.97	16.65	5.4	8.86	8.04	7.39	6.63	8.12
Merged-chr5-136949724-3	chr5	136949206	136950206	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3569.0	NM_001163243	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	10.3	17.97	11.1	29.01	16.33	31.35	23.24	30.95	16.86
Merged-chr18-55146881-3	chr18	55146382	55147382	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154291.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	8.01	13.82	5.55	14.17	13.06	15.27	13.73	9.73	18.74
Merged-chr11-75655378-1	chr11	75654878	75655878	+	972.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080775)	promoter-TSS (NM_001080775)	-637.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	425.04	382.45	254.36	420.35	366.21	290.17	426.7	524.41	236.07
Merged-chr2-75613266-3	chr2	75612700	75613700	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46059.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	22.88	12.9	0.92	24.96	23.33	19.29	61.26	67.21	20.61
Merged-chrX-21690944-1	chrX	21690444	21691444	+	972.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23956.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	12.59	30.41	12.02	24.96	23.79	17.68	12.67	20.34	9.99
Merged-chr1-121508930-3	chr1	121508435	121509435	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010483)	TTS (NM_010483)	19530.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	95.53	105.52	56.42	52.63	37.79	61.89	113.01	118.94	53.71
Merged-chr19-16128933-3	chr19	16128430	16129430	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3901.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	9.15	7.83	11.1	17.54	5.6	4.82	9.51	8.84	11.24
Merged-chr17-71684433-3	chr17	71683942	71684942	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177087, intron 1 of 19)	intron (NM_177087, intron 1 of 19)	11181.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	4.58	5.07	5.55	4.72	2.8	8.04	2.11	3.98	7.49
Merged-chr2-180104586-3	chr2	180104092	180105092	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133849)	promoter-TSS (NM_133849)	-185.0	NM_133849	99296.0	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	6.86	0.92	1.85	4.05	0.93	1.61	3.17	1.33	1.87
Merged-chr13-94381600-3	chr13	94381091	94382091	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	22631.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	49.2	74.65	47.17	41.16	49.92	67.52	48.58	83.13	43.72
Merged-chr8-104395878-3	chr8	104395429	104396429	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153582)	promoter-TSS (NM_153582)	-122.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	41.76	16.59	37.0	33.74	16.79	36.17	25.35	11.5	12.49
Merged-chr11-95896619-1	chr11	95896119	95897119	+	972.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008081, intron 1 of 10)	intron (NM_008081, intron 1 of 10)	18252.0	NM_008081	14422.0	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	72.08	79.25	49.02	25.64	11.2	16.08	16.9	11.5	7.49
Merged-chr3-109027276-2	chr3	109026771	109027771	+	972.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163567, exon 1 of 11)	exon (NM_001163567, exon 1 of 11)	336.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	81.23	85.71	86.02	90.41	44.78	76.36	108.79	91.09	68.7
Merged-chr16-30550534-3	chr16	30550043	30551043	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172614)	promoter-TSS (NM_172614)	35.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	10.3	4.61	9.25	5.4	1.4	6.43	7.39	3.1	1.25
Merged-chr11-20251422-3	chr11	20250930	20251930	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-2006.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	13.16	13.82	17.57	14.17	9.33	4.82	11.62	10.17	9.37
Merged-chr4-93551288-3	chr4	93550804	93551804	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-215793.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	20.59	23.5	32.37	10.8	11.2	16.88	19.01	20.34	18.74
Merged-chr15-50705474-3	chr15	50704986	50705986	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	B3A|SINE|B2	183563.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.16	17.51	7.4	21.59	16.33	8.84	25.35	17.69	16.24
Merged-chr13-49292127-3	chr13	49291620	49292620	+	972.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 3 of 17)	L1M4c|LINE|L1	17088.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	22.31	26.26	16.65	12.14	19.59	22.51	15.84	16.8	18.11
Merged-chr7-100875937-3	chr7	100875428	100876428	+	972.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 20 of 20)	intron (NM_001081116, intron 20 of 20)	6481.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	22.31	21.2	19.42	29.69	15.86	22.51	23.24	19.46	9.37
Merged-chr2-150841249-3	chr2	150840641	150841641	+	972.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 6 of 12)	intron (NR_151505, intron 6 of 12)	1429.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	344.95	436.82	225.69	383.24	351.75	272.48	371.78	500.98	203.6
Merged-chr17-34325320-2	chr17	34324827	34325827	+	972.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033978)	promoter-TSS (NM_001033978)	-348.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	13.73	9.22	2.77	2.02	1.87	2.41	22.18	14.59	3.75
Merged-chr1-180401339-3	chr1	180400835	180401835	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-70786.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	257.42	182.93	117.47	228.05	167.94	135.84	164.76	164.93	104.92
Merged-chr6-72549159-3	chr6	72548658	72549658	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271395)	promoter-TSS (NM_001271395)	-115.0	NM_001042534	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	52.63	44.24	30.52	82.99	75.11	114.14	50.7	52.18	45.59
Merged-chr14-75832179-3	chr14	75831678	75832678	+	972.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	12786.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	33.75	34.1	24.05	55.33	25.19	45.82	53.87	50.85	26.85
Merged-chr1-98095611-3	chr1	98095114	98096114	+	972.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013626)	promoter-TSS (NM_013626)	18.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	8.01	3.23	3.7	6.75	7.0	6.43	4.22	3.54	2.5
Merged-chr5-52677341-3	chr5	52676836	52677836	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7635.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	3.43	3.69	10.17	4.72	6.06	8.84	4.22	2.65	6.25
Merged-chr11-95688631-3	chr11	95688133	95689133	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21676.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	124.14	126.25	130.42	119.43	104.5	158.35	121.46	120.27	71.82
Merged-chr7-99782168-3	chr7	99781676	99782676	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15012.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	23.45	35.02	31.45	41.83	26.12	33.76	49.64	49.96	30.6
Merged-chr2-113656094-3	chr2	113655596	113656596	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-28994.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	17.16	15.67	12.95	26.31	20.99	27.33	13.73	5.31	8.74
Merged-chr6-84015433-3	chr6	84014940	84015940	+	972.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 1 of 54)	intron (NM_001077694, intron 1 of 54)	-3946.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	5.15	2.3	6.47	8.1	2.33	6.43	1.06	0.88	1.25
Merged-chr10-12871296-1	chr10	12870796	12871796	+	972.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	-9561.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.0	3.69	0.0	3.37	1.87	3.22	16.9	16.8	14.99
Merged-chr2-93435108-3	chr2	93434622	93435622	+	972.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271430, intron 2 of 8)	intron (NM_001271430, intron 2 of 8)	-13115.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	17.73	17.05	5.55	26.31	22.39	4.82	15.84	11.5	3.12
Merged-chr11-119091587-4	chr11	119091123	119092123	+	972.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5386.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	45.76	18.43	7.4	76.24	39.65	17.68	39.08	19.01	8.12
Merged-chr4-141623956-3	chr4	141623454	141624454	+	972.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013780)	promoter-TSS (NM_001013780)	-120.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	13.16	13.36	30.52	6.07	15.39	8.84	7.39	6.19	8.74
Merged-chr3-88436934-3	chr3	88436413	88437413	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163491, exon 15 of 15)	exon (NM_001163491, exon 15 of 15)	4038.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	8.58	3.69	10.17	12.14	13.06	15.27	13.73	3.54	9.37
Merged-chrX-93655336-3	chrX	93654845	93655845	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177546, intron 1 of 7)	intron (NM_177546, intron 1 of 7)	482.0	NM_177546	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	34.32	61.75	41.62	45.21	37.79	69.13	59.15	65.88	33.1
Merged-chr8-72487179-3	chr8	72486681	72487681	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	5433.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	17.73	31.79	35.15	14.17	14.0	47.42	12.67	13.71	31.23
Merged-chr9-77825859-3	chr9	77825343	77826343	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71308.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	21.17	36.86	37.92	61.4	47.58	40.19	99.28	68.09	60.58
Merged-chr8-120737502-3	chr8	120737053	120738053	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008320, intron 1 of 8)	intron (NM_008320, intron 1 of 8)	-1086.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	84.09	98.61	61.97	116.73	117.56	97.26	190.11	185.27	72.45
Merged-chr7-55784737-3	chr7	55784235	55785235	+	972.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-9390.0	NM_001360874	233276.0	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	10.87	5.07	3.7	12.14	4.67	9.65	8.45	3.98	7.49
Merged-chr13-54306250-3	chr13	54305759	54306759	+	972.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65090.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	13.73	20.27	15.72	14.84	8.4	11.25	27.46	33.6	20.61
Merged-chr3-52634560-3	chr3	52634074	52635074	+	972.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105150.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	6.86	5.53	5.55	6.75	11.2	8.04	6.34	8.4	8.74
Merged-chr17-24707636-3	chr17	24707134	24708134	+	972.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	19.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	240.26	191.69	214.59	129.55	114.76	102.08	180.61	242.75	108.67
Merged-chr16-31938582-3	chr16	31938062	31939062	+	972.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 1 of 2)	MT2B|LTR|ERVL	4711.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	140.73	127.64	92.5	124.15	89.1	90.02	116.18	127.34	94.3
Merged-chr7-74554981-3	chr7	74554480	74555480	+	972.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-200.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	7.44	5.07	9.25	9.45	4.2	0.0	7.39	10.17	5.0
Merged-chr3-87332182-2	chr3	87331662	87332662	+	972.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-25719.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	101.25	119.34	66.6	118.75	75.11	144.68	87.66	91.97	35.6
Merged-chr2-48270506-2	chr2	48270013	48271013	+	972.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-543596.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.86	3.69	5.55	5.4	4.67	2.41	8.45	5.75	3.75
Merged-chr17-87746427-3	chr17	87745924	87746924	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199251, exon 2 of 2)	exon (NM_199251, exon 2 of 2)	51570.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	13.16	2.3	1.85	7.42	1.4	1.61	8.45	0.88	1.25
Merged-chr2-153163679-3	chr2	153163190	153164190	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	2389.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	46.34	70.5	33.3	39.81	29.86	45.82	57.03	39.8	35.6
Merged-chr2-102700917-3	chr2	102700404	102701404	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-5534.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	18.88	18.43	14.8	46.56	38.25	36.17	27.46	26.53	9.99
Merged-chr3-144561746-3	chr3	144561257	144562257	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	8459.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	30.89	21.2	11.1	27.66	19.13	15.27	16.9	26.53	17.49
Merged-chr1-155075175-3	chr1	155074708	155075708	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	8056.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	77.23	44.7	39.77	82.32	44.78	50.64	59.15	34.05	34.97
Merged-chr12-4133122-1	chr12	4132622	4133622	+	972.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159536)	promoter-TSS (NM_001159536)	-275.0	NM_001159537	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	17.73	6.45	14.8	20.24	23.79	18.49	6.34	0.44	6.25
Merged-chr7-135652949-3	chr7	135652451	135653451	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-637.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	102.4	143.76	95.27	101.88	125.49	91.63	116.18	162.28	69.95
Merged-chr15-91178843-3	chr15	91178340	91179340	+	972.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 4 of 9)	intron (NM_011994, intron 4 of 9)	13167.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	54.92	67.74	30.52	72.19	79.31	69.93	119.35	95.07	36.22
Merged-chr17-34924567-3	chr17	34924064	34925064	+	972.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023557, intron 13 of 20)	PB1D10|SINE|Alu	-6689.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	86.95	106.44	87.87	75.57	77.44	98.87	77.1	114.52	82.44
Merged-chr10-12963603-3	chr10	12963095	12964095	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	664.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	62.35	67.74	31.45	49.25	55.98	62.7	102.45	89.32	71.2
Merged-chr5-118155344-3	chr5	118154777	118155777	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172721, exon 1 of 11)	exon (NM_172721, exon 1 of 11)	181.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	38.9	14.28	12.02	24.96	12.13	26.53	33.8	12.82	11.87
Merged-chr16-91359554-3	chr16	91359060	91360060	+	972.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13223.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	56.63	30.41	14.8	70.85	32.19	37.78	123.57	125.13	52.46
Merged-chr13-102899449-3	chr13	102898959	102899959	+	972.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	139204.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	12.01	13.36	33.3	16.87	10.26	8.04	20.07	15.92	7.49
Merged-chr6-125071308-3	chr6	125070848	125071848	+	972.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163268)	promoter-TSS (NM_001163268)	71.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	53.77	69.12	67.52	97.16	107.76	90.83	105.62	80.47	45.59
Merged-chr13-94154666-2	chr13	94154153	94155153	+	972.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	96857.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	8.01	4.15	3.7	35.76	40.59	35.37	12.67	17.24	5.0
Merged-chr2-129914359-1	chr2	129913859	129914859	+	972.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97981.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	8.58	7.83	3.7	103.91	77.91	69.93	3.17	7.07	8.12
Merged-chr13-59906389-3	chr13	59905893	59906893	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-83246.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	22.31	20.74	1.85	13.49	10.26	12.06	24.29	15.92	11.87
Merged-chr6-16898530-3	chr6	16898025	16899025	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031198)	promoter-TSS (NM_031198)	-84.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	146.45	221.64	80.47	115.38	137.62	90.02	153.15	155.64	72.45
Merged-chr5-125348639-3	chr5	125348133	125349133	+	972.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7539.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	69.79	58.06	53.65	71.52	50.38	54.66	39.08	34.49	24.36
Merged-chr19-21713695-4	chr19	21713252	21714252	+	972.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	60443.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	43.48	53.91	61.05	48.58	60.65	82.79	72.88	78.26	43.72
Merged-chr3-95818862-3	chr3	95818383	95819383	+	972.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	70.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	217.95	231.31	248.81	238.18	232.79	254.8	273.55	296.69	231.7
Merged-chr1-43500313-3	chr1	43499814	43500814	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	54563.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	28.03	26.73	31.45	45.21	27.52	25.72	90.83	75.61	36.85
Merged-chr1-176801093-3	chr1	176800585	176801585	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099637, intron 1 of 19)	intron (NM_001099637, intron 1 of 19)	6039.0	NM_001099637	545389.0	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	28.6	36.4	24.97	38.46	26.59	37.78	55.98	38.91	34.35
Merged-chr11-43682583-3	chr11	43682080	43683080	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164231, exon 1 of 4)	exon (NM_001164231, exon 1 of 4)	582.0	NM_001164231	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	180.77	99.07	146.14	185.55	93.77	128.61	182.72	72.96	80.56
Merged-chr12-73054067-3	chr12	73053582	73054582	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7370.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	4.0	1.38	3.7	2.02	2.8	3.22	3.17	1.77	2.5
Merged-chr1-184049053-6	chr1	184048561	184049561	+	972.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	14680.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	78.37	76.49	55.5	51.28	41.52	42.6	83.44	101.26	36.85
Merged-chr4-86902611-3	chr4	86902112	86903112	+	972.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	28198.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	34.9	57.14	33.3	38.46	32.66	49.03	46.47	37.58	25.61
Merged-chr13-52981108-4	chr13	52980621	52981621	+	972.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-82.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	20.59	16.13	30.52	24.29	17.73	35.37	55.98	17.69	20.61
Merged-chr16-24137494-3	chr16	24137002	24138002	+	972.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54812.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	21.74	18.89	32.37	31.71	25.19	17.68	22.18	17.24	13.74
Merged-chr5-140418836-3	chr5	140418316	140419316	+	972.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133916)	promoter-TSS (NM_133916)	-489.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	175.05	191.69	135.97	174.08	165.14	215.42	275.66	197.21	132.4
Merged-chr2-13575599-3	chr2	13575060	13576060	+	972.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011701, exon 2 of 9)	exon (NM_011701, exon 2 of 9)	1249.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	38.33	49.76	41.62	43.18	34.99	38.58	21.12	19.9	16.86
Merged-chr4-133615688-2	chr4	133615185	133616185	+	972.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	-13517.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	54.35	82.94	65.67	157.88	151.15	132.63	4.22	2.65	6.25
Merged-chr8-105564924-3	chr8	105564390	105565390	+	972.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	B2_Mm1t|SINE|B2	1174.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	140.73	154.36	116.54	151.14	125.02	103.69	149.98	163.6	88.06
Merged-chr10-94578151-3	chr10	94577631	94578631	+	972.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177026, intron 1 of 3)	intron (NM_177026, intron 1 of 3)	1868.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	29.17	28.57	9.25	41.16	27.52	23.31	21.12	7.52	14.99
Merged-chr15-36648043-3	chr15	36647527	36648527	+	972.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39054.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	24.03	14.75	21.27	7.42	13.53	16.88	38.02	34.05	17.49
Merged-chr19-11804625-3	chr19	11804130	11805130	+	972.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	14773.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	49.77	58.06	59.2	56.0	45.72	53.05	65.48	70.75	41.22
Merged-chr5-25087162-1	chr5	25086662	25087662	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	13480.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.72	5.07	8.32	13.49	11.66	6.43	3.17	2.21	6.25
Merged-chr19-5490019-1	chr19	5489519	5490519	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007687)	promoter-TSS (NM_007687)	-436.0	NM_007687	12631.0	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	65.79	77.87	60.12	31.04	34.99	62.7	72.88	120.27	61.83
Merged-chr9-70761226-3	chr9	70760727	70761727	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007399, intron 9 of 15)	intron (NM_007399, intron 9 of 15)	82245.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	126.42	193.53	120.24	178.8	181.94	167.99	211.24	231.25	112.42
Merged-chr3-126663583-3	chr3	126663061	126664061	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	66610.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	85.24	76.03	61.97	49.93	47.12	18.49	84.49	109.22	37.47
Merged-chr19-9989175-1	chr19	9988675	9989675	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011913, exon 9 of 12)	exon (NM_011913, exon 9 of 12)	6529.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	16.59	2.76	7.4	7.42	3.73	8.04	7.39	4.86	9.37
Merged-chr15-63155930-1	chr15	63155430	63156430	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	323678.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	1.72	2.76	3.7	6.07	9.8	5.63	2.11	1.77	1.87
Merged-chr6-67102808-1	chr6	67102308	67103308	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65401.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	18.88	7.83	2.77	20.92	17.73	8.04	5.28	3.1	11.87
Merged-chr6-92988400-2	chr6	92987901	92988901	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	47819.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	32.04	23.5	3.7	136.97	118.03	67.52	5.28	1.33	1.25
Merged-chr8-111562620-3	chr8	111562125	111563125	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	24282.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	36.04	41.47	32.37	79.62	47.58	42.6	31.69	21.67	13.74
Merged-chr1-52817760-3	chr1	52817262	52818262	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008384)	promoter-TSS (NM_008384)	-74.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	13.16	12.44	12.02	21.59	18.19	24.92	24.29	18.13	11.24
Merged-chr1-170885462-3	chr1	170884955	170885955	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356485)	promoter-TSS (NM_001356485)	85.0	NR_151476	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	42.9	56.22	55.5	59.38	63.91	43.4	50.7	41.56	17.49
Merged-chr19-7558885-2	chr19	7558396	7559396	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 2 of 4)	intron (NM_001362425, intron 2 of 4)	1411.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	46.34	59.9	76.77	28.34	33.59	37.78	85.55	72.07	41.84
Merged-chr9-5357061-1	chr9	5356561	5357561	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009808, intron 8 of 10)	intron (NM_009808, intron 8 of 10)	11585.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	6.29	8.75	3.7	4.05	5.13	3.22	7.39	3.98	7.49
Merged-chr3-25721737-1	chr3	25721237	25722237	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357095, intron 4 of 6)	intron (NM_001357095, intron 4 of 6)	432249.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	2.86	3.69	0.0	4.72	6.53	0.0	6.34	2.21	6.25
Merged-chr17-81706776-3	chr17	81706277	81707277	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	31610.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	133.29	140.54	67.52	174.75	142.75	139.86	167.93	191.46	84.31
Merged-chr10-19008666-2	chr10	19008158	19009158	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 1 of 7)	intron (NM_001166402, intron 1 of 7)	3305.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	164.75	148.83	75.85	174.08	108.7	69.13	122.52	127.34	81.81
Merged-chr1-131671315-3	chr1	131670809	131671809	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 7 of 9)	intron (NM_007799, intron 7 of 9)	-17386.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	17.16	8.29	1.85	4.72	3.73	3.22	16.9	9.29	5.0
Merged-chr6-73772192-1	chr6	73771692	73772692	+	972.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-301171.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	3.43	7.37	9.25	10.12	7.93	13.66	3.17	2.21	4.37
Merged-chr15-97908289-3	chr15	97907739	97908739	+	972.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009504)	promoter-TSS (NM_009504)	57.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	9.72	7.83	7.4	11.47	2.33	16.08	9.51	5.75	9.99
Merged-chr2-51147139-2	chr2	51146708	51147708	+	971.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028810, intron 2 of 4)	intron (NM_028810, intron 2 of 4)	1903.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	30.89	14.28	20.35	20.24	8.86	19.29	21.12	8.4	19.98
Merged-chr5-43848459-3	chr5	43847948	43848948	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20361.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	53.2	55.75	56.42	65.45	59.71	58.68	41.19	39.35	47.46
Merged-chr8-13214092-3	chr8	13213573	13214573	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13449.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	6.29	6.91	13.87	12.82	10.73	4.82	9.51	4.86	3.12
Merged-chr5-140381335-3	chr5	140380822	140381822	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	7986.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	49.77	50.69	72.15	40.48	38.72	66.71	44.36	29.18	29.98
Merged-chr4-128785129-3	chr4	128784622	128785622	+	971.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	20990.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	53.2	47.0	14.8	72.19	50.85	28.13	54.92	55.27	14.36
Merged-chr11-26587752-3	chr11	26587254	26588254	+	971.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	6166.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	73.22	85.25	62.9	54.65	39.65	34.56	71.82	64.56	41.84
Merged-chr14-20372042-3	chr14	20371535	20372535	+	971.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024512, intron 7 of 13)	MTD|LTR|ERVL-MaLR	16875.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	21.17	23.96	16.65	23.62	20.99	18.49	29.57	19.9	9.99
Merged-chr12-104751701-2	chr12	104751211	104752211	+	971.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148948, intron 1 of 26)	CpG	241.0	NM_148948	192119.0	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	118.42	77.87	62.9	96.48	55.51	53.05	86.61	34.49	56.21
Merged-chr7-128312499-2	chr7	128311996	128312996	+	971.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14365.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	53.2	26.26	19.42	60.05	18.66	16.88	58.09	48.64	14.99
Merged-chr16-45757639-3	chr16	45757136	45758136	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 13 of 16)	intron (NM_001357078, intron 13 of 16)	-14681.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	6.29	4.15	16.65	10.12	5.6	2.41	6.34	5.31	3.12
Merged-chr11-54089086-3	chr11	54088605	54089605	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11819.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	97.82	115.2	60.12	118.75	101.7	65.11	115.12	132.65	51.84
Merged-chr10-61143507-3	chr10	61143031	61144031	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	intron (NM_009163, intron 2 of 14)	4153.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	46.91	41.01	29.6	62.07	51.78	41.8	48.58	40.24	27.48
Merged-chr15-67514251-3	chr15	67513747	67514747	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	287478.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	40.62	53.91	49.95	52.63	53.65	51.44	58.09	73.4	44.34
Merged-chr13-111788437-3	chr13	111787974	111788974	+	971.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	20519.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	21.74	29.49	20.35	38.46	24.26	19.29	59.15	23.43	12.49
Merged-chr5-29950610-2	chr5	29950114	29951114	+	971.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-62500.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	10.87	11.52	3.7	14.84	9.33	11.25	16.9	10.17	8.12
Merged-chr8-120742703-3	chr8	120742210	120743210	+	971.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	4071.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	62.93	73.26	82.32	92.44	73.24	102.88	94.0	127.34	34.35
Merged-chr3-31425584-2	chr3	31425090	31426090	+	971.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-115271.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.43	9.22	5.55	23.62	27.52	34.56	25.35	17.69	8.74
Merged-chr11-75654970-3	chr11	75654494	75655494	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080774, intron 1 of 31)	intron (NM_001080774, intron 1 of 31)	-1021.0	NM_001080775	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	286.03	256.66	194.24	295.53	233.72	199.34	311.57	349.75	188.61
Merged-chr7-135768774-3	chr7	135768284	135769284	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52405.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	37.76	23.96	33.3	16.87	21.46	24.11	45.42	30.07	41.22
Merged-chr8-84989999-3	chr8	84989499	84990499	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167991)	promoter-TSS (NM_001167991)	-596.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	125.85	126.72	86.02	129.55	71.38	87.61	121.46	102.14	78.69
Merged-chr13-34082701-3	chr13	34082190	34083190	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-4682.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	49.2	39.63	27.75	53.98	20.53	24.11	36.97	24.76	23.73
Merged-chr8-8334639-3	chr8	8334136	8335136	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	326137.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	32.04	22.58	22.2	32.39	24.72	31.35	30.63	37.14	13.74
Merged-chr8-70560295-3	chr8	70559787	70560787	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	20612.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	20.02	12.44	9.25	67.47	47.58	36.17	21.12	26.09	18.74
Merged-chr6-51468783-4	chr6	51468253	51469253	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016806, intron 1 of 10)	intron (NM_016806, intron 1 of 10)	1141.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	143.01	281.08	134.12	158.56	206.2	175.23	168.99	221.08	169.25
Merged-chr8-70131312-3	chr8	70130812	70131812	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104434)	promoter-TSS (NR_104434)	-15.0	NR_104434	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	100.68	72.8	70.3	81.64	49.92	75.56	139.42	78.26	69.95
Merged-chr7-89309269-4	chr7	89308771	89309771	+	971.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	ORR1F|LTR|ERVL-MaLR	29516.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	34.32	39.63	26.82	58.03	48.05	36.17	72.88	75.17	53.71
Merged-chr8-125116745-3	chr8	125116259	125117259	+	971.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	62564.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	9.72	5.53	5.55	4.72	5.6	4.82	3.17	2.21	3.12
Merged-chr3-59206746-3	chr3	59206217	59207217	+	971.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4165.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	196.79	215.19	138.74	205.79	138.55	135.04	160.54	178.19	124.28
Merged-chr2-112284576-3	chr2	112284078	112285078	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133648)	promoter-TSS (NM_133648)	-110.0	NM_133648	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	12.59	12.9	9.25	9.45	8.86	10.45	7.39	4.86	7.49
Merged-chr2-168539238-3	chr2	168538750	168539750	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	MER3|DNA|hAT-Charlie	51115.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	52.63	74.65	71.22	75.57	78.37	84.4	60.2	26.97	21.23
Merged-chr12-77288706-3	chr12	77288221	77289221	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	49982.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	14.87	16.13	13.87	16.87	7.93	18.49	12.67	7.07	13.74
Merged-chr17-70974343-3	chr17	70973836	70974836	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023402, exon 4 of 4)	exon (NM_023402, exon 4 of 4)	16180.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	48.05	42.39	39.77	44.53	42.92	49.83	43.3	67.65	41.84
Merged-chr7-128418177-3	chr7	128417688	128418688	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026418)	promoter-TSS (NM_026418)	-16.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	35.47	35.94	51.8	61.4	37.32	54.66	42.25	46.87	27.48
Merged-chr14-54863602-3	chr14	54863091	54864091	+	971.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177705, intron 1 of 1)	intron (NM_001177705, intron 1 of 1)	567.0	NM_001177705	239099.0	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	144.16	86.63	67.52	123.47	85.37	74.75	84.49	60.13	38.1
Merged-chr15-79108967-4	chr15	79108473	79109473	+	971.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177461)	promoter-TSS (NM_177461)	-10.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	134.43	78.33	95.27	191.62	120.36	129.41	76.05	39.8	39.35
Merged-chr4-121197191-3	chr4	121196678	121197678	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346660, intron 1 of 7)	intron (NM_001346660, intron 1 of 7)	17906.0	NM_001346660	109263.0	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	10.3	14.28	13.87	18.89	6.53	19.29	7.39	6.63	16.24
Merged-chr12-95694119-3	chr12	95693613	95694613	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	1887.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.58	2.3	2.77	4.05	1.4	6.43	3.17	0.44	0.0
Merged-chr13-32802584-3	chr13	32802073	32803073	+	971.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030215, exon 1 of 7)	exon (NM_030215, exon 1 of 7)	543.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	54.92	43.77	37.92	39.81	41.52	45.01	27.46	34.93	26.23
Merged-chr9-107985277-3	chr9	107984764	107985764	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026597, intron 1 of 1)	intron (NM_026597, intron 1 of 1)	652.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	82.95	73.26	64.75	108.63	47.58	55.46	83.44	80.03	34.35
Merged-chr15-59802548-3	chr15	59802057	59803057	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7598.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.59	14.28	9.25	15.52	12.6	8.84	13.73	10.61	16.86
Merged-chr5-34762351-3	chr5	34761864	34762864	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	624.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	275.16	270.48	216.44	221.31	214.13	167.99	214.41	169.79	184.24
Merged-chr2-71866067-3	chr2	71865566	71866566	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 3 of 3).2	(T)n|Simple_repeat|Simple_repeat	-7158.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	12.01	17.51	7.4	14.84	15.39	12.06	29.57	39.35	21.23
Merged-chr2-32312418-3	chr2	32311929	32312929	+	971.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010065, intron 19 of 20)	CpG-7982	-5836.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	1.14	1.38	3.7	4.72	4.67	1.61	5.28	1.77	8.74
Merged-chr3-31232994-3	chr3	31232477	31233477	+	971.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172861, intron 4 of 7)	intron (NM_172861, intron 4 of 7)	77342.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.15	4.61	3.7	13.49	2.8	9.65	5.28	7.07	6.25
Merged-chr18-88952874-3	chr18	88952356	88953356	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-18934.0	NM_175542	246102.0	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	32.04	22.58	12.02	26.31	34.06	27.33	13.73	13.27	10.62
Merged-chr2-4509935-3	chr2	4509391	4510391	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-49863.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	82.95	97.23	57.35	90.41	68.11	69.13	106.67	106.12	63.08
Merged-chr17-46645733-3	chr17	46645239	46646239	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316742)	promoter-TSS (NM_001316742)	341.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	112.69	87.09	52.72	152.49	132.02	105.3	146.81	135.75	44.97
Merged-chr11-118232291-3	chr11	118231808	118232808	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	16284.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	185.92	190.3	142.44	227.38	171.68	98.87	259.82	254.25	88.06
Merged-chr10-127165135-3	chr10	127164674	127165674	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	18.0	NM_001244617	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	10.87	6.45	1.85	13.49	9.33	12.06	15.84	4.86	5.0
Merged-chr10-43479167-3	chr10	43478694	43479694	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	54.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	113.84	61.28	70.3	115.38	84.9	70.73	152.09	75.61	68.7
Merged-chr6-29925745-3	chr6	29925259	29926259	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037740, intron 4 of 20)	intron (NM_001037740, intron 4 of 20)	8746.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	12.01	5.53	3.7	6.75	5.6	4.82	4.22	4.42	2.5
Merged-chr16-55754048-3	chr16	55753560	55754560	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68078.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	218.52	240.99	148.92	172.73	174.47	138.25	188.0	263.97	154.26
Merged-chr4-53111937-3	chr4	53111432	53112432	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47963.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	14.3	24.88	17.57	40.48	14.46	32.15	51.75	41.12	26.85
Merged-chr7-140954885-3	chr7	140954360	140955360	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030694)	TTS (NM_030694)	1101.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	189.35	181.55	133.19	186.9	139.02	194.52	211.24	233.02	153.63
Merged-chr11-77687383-4	chr11	77686890	77687890	+	971.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	CpG	1251.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	229.39	207.35	204.41	195.67	160.48	204.97	199.62	177.31	172.99
Merged-chr1-177470280-3	chr1	177469775	177470775	+	971.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24454.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.58	2.3	12.95	4.05	2.33	9.65	3.17	4.86	1.25
Merged-chr6-119360464-3	chr6	119359945	119360945	+	971.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355692, intron 4 of 7)	intron (NM_001355692, intron 4 of 7)	28289.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	50.91	71.42	72.15	44.53	56.91	64.3	68.65	61.9	80.56
Merged-chr5-54025823-3	chr5	54025338	54026338	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	27315.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	11.44	12.9	12.95	9.45	15.39	8.04	12.67	10.17	5.62
Merged-chr1-119893187-3	chr1	119892686	119893686	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	19982.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	7.44	0.92	4.62	2.02	6.06	4.82	5.28	0.44	1.25
Merged-chr1-195131640-3	chr1	195131116	195132116	+	971.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355061)	promoter-TSS (NM_001355061)	-46.0	NM_001355061	12946.0	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	183.63	241.45	176.67	186.22	214.59	209.79	165.82	181.73	137.4
Merged-chr11-46820097-3	chr11	46819591	46820591	+	971.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	9292.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	72.65	65.43	39.77	93.79	63.91	88.42	77.1	65.0	39.97
Merged-chr17-36167801-2	chr17	36167296	36168296	+	971.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081032, intron 2 of 7)	CpG-6350	741.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	4.0	5.53	0.0	11.47	9.8	4.82	6.34	7.07	1.25
Merged-chr3-60516452-3	chr3	60515957	60516957	+	971.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	15278.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	70.36	38.71	26.82	78.27	58.31	36.97	52.81	56.6	40.59
Merged-chr18-54997745-3	chr18	54997234	54998234	+	971.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5143.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	33.75	55.29	29.6	37.78	44.78	31.35	47.53	53.5	31.85
Merged-chr8-18849530-3	chr8	18849019	18850019	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026792, intron 1 of 7)	intron (NM_026792, intron 1 of 7)	3240.0	NM_026792	52123.0	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	8.01	9.22	7.4	4.05	8.4	9.65	16.9	7.96	5.0
Merged-chr5-64602110-3	chr5	64601600	64602600	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045078, exon 3 of 4)	non-coding (NR_045078, exon 3 of 4)	8599.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	16.02	16.13	9.25	27.66	12.13	33.76	25.35	13.27	19.98
Merged-chr13-90057852-3	chr13	90057323	90058323	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	Charlie24|DNA|hAT-Charlie	31785.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	56.63	46.54	31.45	27.66	20.53	13.66	49.64	72.52	21.23
Merged-chr3-149280977-3	chr3	149280483	149281483	+	971.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	6246.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	28.03	19.81	3.7	29.69	23.33	11.25	8.45	11.05	2.5
Merged-chr11-22859077-3	chr11	22858593	22859593	+	971.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	CpG	642.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	152.74	158.97	197.94	175.43	145.55	142.27	193.28	192.34	113.04
Merged-chr11-21079940-2	chr11	21079430	21080430	+	971.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11394.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	12.01	22.58	9.25	18.89	18.19	20.9	15.84	22.11	19.98
Merged-chr9-44326548-3	chr9	44326040	44327040	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	-305.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	101.83	112.43	63.82	122.12	86.77	114.14	96.11	92.86	72.45
Merged-chr7-16311005-4	chr7	16310461	16311461	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133234, intron 1 of 3)	intron (NM_133234, intron 1 of 3)	1378.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	127.57	68.66	94.35	116.05	42.45	73.14	137.3	76.49	84.94
Merged-chr6-28864828-3	chr6	28864357	28865357	+	971.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-33110.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	10.87	18.43	27.75	24.96	16.33	22.51	24.29	22.55	19.98
Merged-chr18-39623378-2	chr18	39622880	39623880	+	971.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-136135.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	9.15	9.22	14.8	13.49	10.73	17.68	23.24	19.9	16.24
Merged-chr13-23730622-1	chr13	23730122	23731122	+	971.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8185.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	25.74	20.27	29.6	13.49	10.26	22.51	41.19	53.94	41.22
Merged-chr15-33186509-3	chr15	33185988	33186988	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	L1_Mus4|LINE|L1	103359.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	80.09	134.09	86.02	91.09	81.17	94.85	114.07	161.83	77.44
Merged-chr4-136894134-3	chr4	136893630	136894630	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	77.23	53.45	86.02	80.97	54.58	77.97	71.82	50.85	43.09
Merged-chr15-78247855-3	chr15	78247343	78248343	+	971.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	3032.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	93.24	82.48	74.92	116.05	77.44	106.9	70.76	47.75	37.47
Merged-chr7-3617358-3	chr7	3616868	3617868	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025348)	promoter-TSS (NM_025348)	-5.0	NM_025348	66091.0	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	25.17	22.58	23.12	26.99	18.66	40.99	35.91	28.3	15.61
Merged-chr10-14531230-3	chr10	14530722	14531722	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 2 of 24)	intron (NM_001002268, intron 2 of 24)	13814.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	5.15	6.45	3.7	7.42	7.93	5.63	25.35	5.75	11.24
Merged-chr4-105271397-3	chr4	105270918	105271918	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114071.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	21.17	8.75	7.4	18.89	13.06	27.33	38.02	23.43	9.99
Merged-chr5-72551404-3	chr5	72550907	72551907	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	8238.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	57.78	67.74	74.0	45.88	32.66	55.46	63.37	54.39	45.59
Merged-chr11-50130911-3	chr11	50130399	50131399	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290759)	promoter-TSS (NM_001290759)	-461.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	88.67	68.66	37.0	91.76	74.64	61.09	90.83	105.24	36.22
Merged-chr19-56734208-3	chr19	56733727	56734727	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11855.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	20.59	28.11	11.1	22.27	23.79	24.11	22.18	26.97	15.61
Merged-chr17-78200800-3	chr17	78200270	78201270	+	971.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015800, exon 1 of 17)	exon (NM_015800, exon 1 of 17)	522.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	65.21	50.69	56.42	66.12	45.25	69.93	51.75	33.6	46.84
Merged-chr6-72544572-3	chr6	72544054	72545054	+	971.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271415)	promoter-TSS (NM_001271415)	17.0	NM_001271415	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	42.9	25.8	14.8	61.4	37.32	52.25	34.85	29.18	13.12
Merged-chr10-54054417-3	chr10	54053956	54054956	+	971.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	21340.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.15	5.99	5.55	13.49	4.2	4.82	8.45	5.31	6.25
Merged-chr19-32330401-3	chr19	32329887	32330887	+	971.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	18929.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	10.3	12.44	7.4	20.24	13.53	41.8	4.22	7.52	8.74
Merged-chr10-24640692-2	chr10	24640195	24641195	+	971.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	45253.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	29.75	43.31	46.25	49.93	47.12	58.68	35.91	40.24	13.74
Merged-chr17-12039415-3	chr17	12038898	12039898	+	971.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-79886.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	2.86	3.69	9.25	2.02	5.13	4.82	6.34	1.77	1.25
Merged-chr2-151996469-3	chr2	151995958	151996958	+	971.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027172)	promoter-TSS (NM_027172)	-53.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	2.86	1.84	3.7	2.02	5.13	5.63	4.22	0.44	1.25
Merged-chr12-99964537-3	chr12	99964048	99965048	+	971.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146037)	promoter-TSS (NM_146037)	49.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	46.91	40.55	28.67	56.68	49.92	61.89	41.19	45.54	25.61
Merged-chr9-106394871-1	chr9	106394371	106395371	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26239.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.86	0.46	4.62	0.0	1.4	0.0	7.39	1.77	4.37
Merged-chr9-40765176-1	chr9	40764676	40765676	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	B2_Mm2|SINE|B2	-36097.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	71.51	71.88	65.67	53.98	69.04	55.46	49.64	56.6	35.6
Merged-chr8-117298400-3	chr8	117297921	117298921	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	41402.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	17.16	20.27	22.2	22.94	19.13	27.33	16.9	11.94	21.86
Merged-chr1-7842647-2	chr1	7842146	7843146	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	753726.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.43	4.61	4.62	1.35	1.4	4.82	1.06	1.77	1.25
Merged-chr10-79985950-3	chr10	79985446	79986446	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1686.0	NM_001003949	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	136.72	135.93	113.77	137.64	119.89	121.37	145.75	194.11	113.66
Merged-chr3-95706436-3	chr3	95705926	95706926	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-18509.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	6.29	14.28	7.4	13.49	15.39	16.88	9.51	8.4	10.62
Merged-chr2-22795575-3	chr2	22795076	22796076	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	RLTR13C1|LTR|ERVK	21249.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	100.68	100.91	43.47	94.46	53.18	51.44	95.06	111.43	39.97
Merged-chr7-12987379-1	chr7	12986879	12987879	+	971.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009512)	TTS (NM_009512)	9531.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	2.29	2.76	12.95	7.42	3.27	3.22	25.35	30.95	51.21
Merged-chr11-121748496-3	chr11	121747988	121748988	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46061.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	79.52	68.66	72.15	108.63	63.91	129.41	113.01	92.86	69.32
Merged-chr1-172500256-3	chr1	172499770	172500770	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178598)	promoter-TSS (NM_178598)	24.0	NM_178598	21346.0	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	96.68	77.87	49.95	141.69	98.43	97.26	142.59	137.51	61.2
Merged-chr14-57910725-3	chr14	57910212	57911212	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20376.0	NM_001360097	75965.0	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|HK11	zinc finger, DHHC domain containing 20	protein-coding	7.44	8.29	1.85	10.8	12.13	6.43	9.51	0.0	9.37
Merged-chr3-84884330-1	chr3	84883830	84884830	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	MTE2b|LTR|ERVL-MaLR	20185.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	29.75	27.19	25.9	57.35	53.65	54.66	35.91	22.99	16.24
Merged-chr9-57854466-3	chr9	57853971	57854971	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20237.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.0	5.53	1.85	6.75	0.47	0.0	4.22	2.21	5.62
Merged-chr8-57652878-3	chr8	57652404	57653404	+	971.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144731, exon 1 of 12)	exon (NM_144731, exon 1 of 12)	151.0	NM_001167981	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	93.82	65.43	82.32	94.46	53.18	39.39	138.36	56.6	56.83
Merged-chr1-166001630-3	chr1	166001105	166002105	+	971.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	CpG	1029.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	65.21	25.34	45.32	63.42	34.99	63.5	113.01	58.81	38.72
Merged-chr8-116980305-3	chr8	116979793	116980793	+	971.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1334.0	NM_001357255	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	25.17	58.98	30.52	34.41	31.72	38.58	54.92	38.47	44.97
Merged-chr16-36939338-3	chr16	36938811	36939811	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	RLTR40|LTR|ERVK	4328.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	42.33	70.5	55.5	53.3	34.06	60.28	71.82	84.45	56.83
Merged-chrX-9467957-3	chrX	9467464	9468464	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 1 of 12)	intron (NM_007807, intron 1 of 12)	1360.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	160.75	221.18	74.0	134.94	144.15	74.75	157.37	178.64	52.46
Merged-chr12-101906041-3	chr12	101905531	101906531	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028446, intron 1 of 20)	intron (NM_028446, intron 1 of 20)	-6636.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	37.76	34.1	34.22	39.13	32.19	36.97	55.98	30.95	36.85
Merged-chr1-120524390-3	chr1	120523882	120524882	+	971.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19358.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	21.17	17.97	25.9	7.42	6.53	8.84	38.02	10.61	16.24
Merged-chr8-35643927-3	chr8	35643441	35644441	+	971.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-54921.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	19.45	23.5	20.35	31.04	14.0	44.21	36.97	17.69	13.12
Merged-chr18-79981140-1	chr18	79980640	79981640	+	971.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65755.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	16.02	17.97	20.35	24.29	16.33	18.49	4.22	7.96	3.75
Merged-chr7-106441160-2	chr7	106440649	106441649	+	971.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003967)	promoter-TSS (NR_003967)	-76.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	13.73	35.94	38.85	20.24	26.12	30.54	8.45	7.07	3.75
Merged-chr1-100180239-3	chr1	100179747	100180747	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172851, intron 10 of 23)	L1Md_F2|LINE|L1	407482.0	NM_172851	241175.0	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	4.0	1.38	6.47	1.35	2.33	1.61	1.06	2.21	1.25
Merged-chr4-98396096-3	chr4	98395601	98396601	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 1 of 19)	CpG	275.0	NM_172696	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	10.87	11.06	5.55	33.74	21.93	23.31	11.62	1.77	7.49
Merged-chr5-114128249-3	chr5	114127754	114128754	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359940)	promoter-TSS (NM_001359940)	-36.0	NM_001359941	231642.0	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	42.33	42.39	44.4	43.86	62.98	52.25	69.71	103.91	46.84
Merged-chr10-95298666-3	chr10	95298152	95299152	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	25057.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	230.54	257.12	192.39	178.13	205.73	149.5	157.37	267.07	169.87
Merged-chr8-105259955-3	chr8	105259455	105260455	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033161, exon 3 of 5)	exon (NM_001033161, exon 3 of 5)	4639.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	13.16	9.22	12.95	18.22	6.06	8.04	9.51	4.86	3.12
Merged-chr6-129406208-3	chr6	129405719	129406719	+	971.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001204239)	TTS (NM_001204239)	-2643.0	NM_001205363	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	73.79	99.07	67.52	77.59	66.24	90.02	82.38	111.87	68.7
Merged-chr8-88694496-3	chr8	88694002	88695002	+	971.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2526.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	13.16	3.23	1.85	3.37	3.27	3.22	4.22	1.77	0.0
Merged-chr14-69805488-5	chr14	69804952	69805952	+	971.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153514)	promoter-TSS (NM_153514)	93.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	60.64	58.98	77.7	91.76	67.18	86.81	98.23	84.9	73.07
Merged-chr2-181917641-3	chr2	181917178	181918178	+	971.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53318.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	32.61	43.77	40.7	24.96	27.99	19.29	20.07	29.18	28.1
Merged-chrX-71980653-3	chrX	71980178	71981178	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 1 of 4)	RLTR28|LTR|ERVL	7692.0	NR_003243	77905.0	Mm.99811	NM_183127	ENSMUSG00000053593	Fate1	9230118O15Rik	fetal and adult testis expressed 1	pseudo	4.58	1.84	0.0	2.7	2.33	4.82	3.17	1.33	3.75
Merged-chr16-48832270-3	chr16	48831762	48832762	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10290.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	20.59	29.03	20.35	37.11	22.39	27.33	26.4	30.51	18.74
Merged-chr16-43209717-3	chr16	43209217	43210217	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	L1MD2|LINE|L1	-37567.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	28.03	34.1	22.2	29.69	26.59	27.33	17.96	24.32	25.61
Merged-chr5-4935318-3	chr5	4934794	4935794	+	971.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-177078.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	31.46	22.12	29.6	25.64	15.86	11.25	13.73	19.9	11.24
Merged-chr4-155206643-2	chr4	155206141	155207141	+	971.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	URR1B|DNA|hAT-Charlie	15894.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	36.04	42.39	35.15	9.45	13.06	10.45	55.98	41.56	24.36
Merged-chr4-86948978-2	chr4	86948477	86949477	+	971.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	74563.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	12.01	11.52	7.4	12.82	6.06	12.86	6.34	3.98	1.87
Merged-chr12-98271219-4	chr12	98270727	98271727	+	971.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	Lx2B2|LINE|L1	2592.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	128.14	112.89	79.55	139.67	97.97	76.36	144.7	147.68	62.45
Merged-chr6-98993413-3	chr6	98992922	98993922	+	971.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	34876.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	24.6	8.29	5.55	21.59	11.66	8.04	13.73	3.54	5.0
Merged-chr7-30072833-3	chr7	30072314	30073314	+	971.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252519)	promoter-TSS (NM_001252519)	9.0	NM_177889	330502.0	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	9.72	5.07	5.55	12.14	10.26	25.72	6.34	6.19	11.87
Merged-chr9-99386790-2	chr9	99386299	99387299	+	971.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008624, exon 6 of 6)	3' UTR (NM_008624, exon 6 of 6)	-28269.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	23.45	12.9	9.25	22.94	15.39	19.29	11.62	13.27	12.49
Merged-chr13-45897787-3	chr13	45897277	45898277	+	971.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	67214.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	47.48	50.69	66.6	51.95	53.18	62.7	51.75	49.52	58.71
Merged-chr5-54019701-3	chr5	54019186	54020186	+	971.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	21163.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	37.76	31.79	37.92	29.01	31.26	16.88	40.14	30.95	24.98
Merged-chr17-27857168-3	chr17	27856652	27857652	+	971.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	645.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	147.02	89.39	114.69	175.43	146.48	122.98	201.73	257.34	109.92
Merged-chr9-45238276-3	chr9	45237776	45238776	+	971.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	28431.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	29.75	43.77	49.02	29.01	23.79	53.05	30.63	22.99	33.1
Merged-chr9-106159936-3	chr9	106159422	106160422	+	971.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1784.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	307.19	430.37	249.74	266.51	399.33	235.51	256.65	292.71	139.89
Merged-chr10-79958327-3	chr10	79957832	79958832	+	971.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1820.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	13.73	10.14	11.1	11.47	5.13	20.09	7.39	11.05	7.49
Merged-chr2-157049133-3	chr2	157048623	157049623	+	971.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 3 of 14)	intron (NM_001164663, intron 3 of 14)	30142.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	13.16	14.75	9.25	11.47	9.33	18.49	4.22	3.54	5.0
Merged-chr15-95824027-1	chr15	95823527	95824527	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_155276)	TTS (NR_155276)	6045.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	236.83	177.86	85.1	237.5	129.69	122.18	195.39	211.36	83.06
Merged-chr7-88244630-1	chr7	88244130	88245130	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33455.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	44.62	55.29	29.6	54.65	45.72	56.27	60.2	55.71	41.84
Merged-chr15-64096236-2	chr15	64095730	64096730	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	MIR|SINE|MIR	-35782.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	19.45	26.26	18.5	41.83	15.86	12.06	42.25	35.37	19.98
Merged-chr5-136140170-3	chr5	136139675	136140675	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359414, exon 3 of 3)	exon (NM_001359414, exon 3 of 3)	1394.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	28.6	23.04	37.0	35.09	19.59	39.39	14.79	19.46	47.46
Merged-chr6-125350538-5	chr6	125350018	125351018	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	795.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	305.48	359.87	316.33	277.98	237.45	217.83	420.36	375.84	287.91
Merged-chr8-69808696-3	chr8	69808196	69809196	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198101)	promoter-TSS (NM_198101)	9.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	74.94	84.78	79.55	69.5	76.04	102.88	71.82	67.21	48.71
Merged-chr17-46782609-3	chr17	46782076	46783076	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	80.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	75.51	61.28	73.07	64.77	49.92	81.99	61.26	60.58	46.22
Merged-chr7-98357872-1	chr7	98357372	98358372	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3416.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	56.06	69.12	63.82	83.66	99.37	98.87	124.63	102.58	61.2
Merged-chr13-107837807-3	chr13	107837300	107838300	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	52264.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	120.7	125.79	103.59	107.28	78.84	68.32	115.12	122.04	73.07
Merged-chr1-105805807-3	chr1	105805337	105806337	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	Lx8|LINE|L1	25114.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	8.58	6.91	12.02	14.17	10.26	18.49	17.96	7.52	14.99
Merged-chr9-121846906-2	chr9	121846398	121847398	+	971.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-7437.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	12.59	17.05	15.72	8.77	5.6	19.29	6.34	2.65	12.49
Merged-chr5-5664084-1	chr5	5663584	5664584	+	971.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001103156)	TTS (NM_001103156)	148.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	4.58	1.38	2.77	1.35	2.33	1.61	1.06	0.0	2.5
Merged-chr4-32572324-3	chr4	32571817	32572817	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026843)	promoter-TSS (NR_026843)	-655.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	90.96	65.43	37.92	112.68	64.84	77.16	95.06	73.84	34.97
Merged-chr15-101327448-3	chr15	101326940	101327940	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34228.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	2.86	3.69	5.55	4.72	2.33	1.61	2.11	1.33	2.5
Merged-chr12-34041160-3	chr12	34040664	34041664	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	83493.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	5.72	4.61	0.0	10.8	4.2	0.8	2.11	3.98	3.75
Merged-chr5-35728127-3	chr5	35727633	35728633	+	970.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1143.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	185.35	187.08	88.8	257.07	285.04	185.68	258.77	282.99	81.19
Merged-chr12-78299322-3	chr12	78298861	78299861	+	970.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172952, intron 1 of 23)	MERV1_LTR|LTR|ERV1	72706.0	NM_145965	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	21.17	26.73	31.45	21.59	8.86	17.68	59.15	30.07	12.49
Merged-chr4-133674167-3	chr4	133673674	133674674	+	970.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1008.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	79.52	61.75	74.0	74.89	51.32	57.07	73.93	96.83	73.69
Merged-chr16-10945916-3	chr16	10945407	10946407	+	970.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31110.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	10.87	5.53	5.55	11.47	7.93	6.43	11.62	6.63	7.49
Merged-chr9-64736679-2	chr9	64736179	64737179	+	970.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	1077.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	141.3	136.85	141.52	174.75	122.69	158.35	148.92	160.06	103.05
Merged-chr10-50690504-3	chr10	50690016	50691016	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 14 of 41)	MTC|LTR|ERVL-MaLR	97847.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	17.16	6.45	14.8	14.84	6.06	7.23	8.45	3.54	11.87
Merged-chr8-80272088-3	chr8	80271581	80272581	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214073.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	36.04	22.12	34.22	26.31	27.52	36.97	39.08	18.57	44.34
Merged-chr8-8661999-3	chr8	8661495	8662495	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	8.58	7.83	6.47	10.8	4.2	6.43	5.28	10.17	7.49
Merged-chrX-151096486-3	chrX	151095954	151096954	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164578)	promoter-TSS (NM_001164578)	89.0	NM_001164578	69499.0	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	49.2	34.1	22.2	35.09	32.66	26.53	28.52	15.48	24.98
Merged-chr2-17946289-3	chr2	17945783	17946783	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50675.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	29.17	18.89	18.5	12.82	13.06	8.04	16.9	5.31	2.5
Merged-chr11-21333092-3	chr11	21332604	21333604	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290634, intron 4 of 9)	MIRb|SINE|MIR	11571.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	60.64	73.26	38.85	68.82	67.64	35.37	51.75	57.04	33.72
Merged-chr9-35183548-3	chr9	35183074	35184074	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177847)	TTS (NM_001177847)	-7587.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	21.74	30.87	24.05	15.52	15.39	29.74	20.07	18.57	11.87
Merged-chr5-90905073-3	chr5	90904584	90905584	+	970.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009140, intron 3 of 3)	intron (NM_009140, intron 3 of 3)	1185.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	2.29	10.14	11.1	11.47	3.27	6.43	8.45	3.98	1.25
Merged-chr8-79168119-2	chr8	79167615	79168615	+	970.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	80468.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	8.01	15.67	3.7	10.12	5.13	3.22	16.9	10.17	6.25
Merged-chr5-72172836-3	chr5	72172328	72173328	+	970.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4639.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	23.45	17.05	5.55	22.27	8.4	12.86	9.51	14.15	6.25
Merged-chr6-29528034-6	chr6	29527670	29528670	+	970.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311083, intron 1 of 9)	intron (NM_001311083, intron 1 of 9)	-1112.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	263.14	242.83	276.56	207.14	141.35	195.32	258.77	260.44	192.35
Merged-chr16-70386370-2	chr16	70385873	70386873	+	970.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	MLTR14|LTR|ERV1	72424.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	15.45	17.97	20.35	19.57	11.2	19.29	51.75	45.54	37.47
Merged-chr6-128604686-3	chr6	128604172	128605172	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18262.0	NM_001159902	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	5.15	6.45	1.85	4.05	5.6	2.41	4.22	3.54	2.5
Merged-chr10-82128018-3	chr10	82127538	82128538	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163064)	promoter-TSS (NM_001163064)	25.0	NM_001163064	216177.0	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	20.59	11.06	15.72	14.17	18.19	19.29	14.79	16.36	19.98
Merged-chr19-56556161-3	chr19	56555647	56556647	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025811, intron 2 of 10)	intron (NM_025811, intron 2 of 10)	7886.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	28.03	17.97	12.95	16.19	12.13	10.45	25.35	13.71	18.11
Merged-chr16-36621298-1	chr16	36620798	36621798	+	970.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 2 of 7)	intron (NM_019388, intron 2 of 7)	44779.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	16.02	5.53	14.8	19.57	12.6	12.86	8.45	11.05	4.37
Merged-chr9-40117045-3	chr9	40116549	40117549	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10990.0	NM_146855	258854.0	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	6.29	5.99	9.25	21.59	17.73	9.65	6.34	2.21	2.5
Merged-chrX-35888630-3	chrX	35888153	35889153	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009947)	promoter-TSS (NM_001009947)	-179.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	15.45	15.21	10.17	21.59	17.73	34.56	16.9	11.94	17.49
Merged-chr11-68973845-3	chr11	68973358	68974358	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285442)	promoter-TSS (NM_001285442)	-3.0	NM_001285443	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	9.15	13.82	22.2	10.12	21.93	24.92	16.9	9.29	8.74
Merged-chr6-122593526-3	chr6	122593026	122594026	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	8918.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	35.47	21.66	22.2	26.99	32.66	37.78	46.47	36.7	38.1
Merged-chr17-47408504-3	chr17	47408023	47409023	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6188.0	NM_001172091	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	14.87	5.99	9.25	7.42	6.06	4.02	17.96	11.5	3.75
Merged-chr12-16216440-1	chr12	16215940	16216940	+	970.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	373330.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	6.29	10.6	0.0	12.82	20.99	6.43	2.11	1.33	2.5
Merged-chr15-101146536-3	chr15	101146038	101147038	+	970.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18016.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	66.36	61.28	79.55	60.05	50.85	79.58	64.43	91.97	46.84
Merged-chr17-10335088-3	chr17	10334570	10335570	+	970.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10468.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	50.34	34.56	25.9	64.1	55.05	53.05	39.08	35.37	23.73
Merged-chr17-24895136-3	chr17	24894617	24895617	+	970.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	-3.0	NM_023260	79044.0	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	62.93	50.69	71.22	59.38	64.38	100.47	57.03	66.33	38.72
Merged-chr2-102902091-3	chr2	102901594	102902594	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177785)	promoter-TSS (NM_001177785)	-429.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	67.5	37.78	42.55	53.3	24.26	36.97	49.64	34.05	47.46
Merged-chr19-59075701-3	chr19	59075207	59076207	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175172, exon 1 of 15)	5' UTR (NM_175172, exon 1 of 15)	362.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	88.67	84.32	85.1	99.18	78.84	119.76	81.33	69.86	63.7
Merged-chr1-136609029-3	chr1	136608533	136609533	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15868.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	40.04	24.88	26.82	35.09	19.59	40.19	46.47	42.89	36.85
Merged-chr3-53483888-3	chr3	53483374	53484374	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4919.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	16.59	19.35	12.02	10.8	10.73	16.88	14.79	5.75	18.11
Merged-chr5-120515458-3	chr5	120514941	120515941	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	RSINE1|SINE|B4	4249.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	293.46	267.25	197.94	329.94	264.51	289.36	386.56	432.44	216.71
Merged-chr2-128439076-3	chr2	128438572	128439572	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9721.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	14.87	5.53	20.35	13.49	9.33	22.51	27.46	13.71	13.74
Merged-chr5-109548981-3	chr5	109548491	109549491	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10002.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.72	4.61	9.25	5.4	1.87	4.82	9.51	7.96	9.99
Merged-chr10-81129121-3	chr10	81128603	81129603	+	970.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7168.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	138.44	110.13	83.25	128.2	88.17	75.56	100.34	124.69	80.56
Merged-chr7-102233807-3	chr7	102233331	102234331	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10803.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	46.34	32.72	25.9	39.13	10.73	40.99	30.63	26.53	31.23
Merged-chr3-149220457-2	chr3	149219961	149220961	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54276.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	34.9	41.01	34.22	39.13	38.72	38.58	17.96	11.05	7.49
Merged-chr6-106791609-3	chr6	106791103	106792103	+	970.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	8484.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	42.9	35.94	23.12	22.27	17.26	8.04	38.02	52.18	25.61
Merged-chr9-59657305-4	chr9	59656837	59657837	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	CpG	969.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	92.67	70.04	102.67	98.51	89.57	79.58	141.53	116.73	66.82
Merged-chr13-95038405-3	chr13	95037902	95038902	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172263, intron 15 of 19)	L1MA4|LINE|L1	62058.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	14.3	11.52	4.62	27.66	17.73	11.25	29.57	28.3	17.49
Merged-chr5-113650585-3	chr5	113650088	113651088	+	970.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008153)	promoter-TSS (NM_008153)	-198.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	136.15	121.19	132.27	165.98	169.81	138.25	162.65	121.15	60.58
Merged-chr7-83654043-3	chr7	83653476	83654476	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	1519.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	114.41	135.47	94.35	120.77	90.04	96.45	86.61	80.03	58.08
Merged-chr19-55586217-3	chr19	55585726	55586726	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	Tigger19a|DNA|TcMar-Tigger	115978.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	153.31	164.96	128.57	161.93	152.08	126.19	141.53	150.34	89.31
Merged-chr17-17889879-3	chr17	17889375	17890375	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2051.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	90.96	98.15	50.87	73.54	78.84	53.85	122.52	75.61	63.08
Merged-chr4-150789346-3	chr4	150788836	150789836	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-64460.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	5.15	5.99	1.85	7.42	3.73	4.82	5.28	3.1	1.87
Merged-chr8-83998457-3	chr8	83997953	83998953	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	781.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	21.74	10.6	33.3	22.94	20.99	20.09	13.73	14.15	7.49
Merged-chr6-47877559-3	chr6	47877089	47878089	+	970.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146175)	promoter-TSS (NM_146175)	34.0	NM_146175	101095.0	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	30.32	20.74	44.4	44.53	21.93	47.42	36.97	16.36	30.6
Merged-chr2-163664117-3	chr2	163663616	163664616	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	L1MB2|LINE|L1	5658.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	29.75	35.02	24.05	46.56	29.86	36.17	43.3	36.26	29.35
Merged-chr16-32064141-3	chr16	32063658	32064658	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177326, intron 1 of 14)	LTR16E2|LTR|ERVL	15184.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	31.46	29.49	11.1	18.22	19.59	12.86	29.57	23.43	16.24
Merged-chr1-127213630-1	chr1	127213130	127214130	+	970.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	8644.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	16.02	14.75	23.12	12.82	9.8	14.47	38.02	31.84	21.86
Merged-chr3-152932250-3	chr3	152931753	152932753	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	49954.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	9.15	8.75	14.8	16.87	4.67	28.94	27.46	27.41	31.85
Merged-chr5-68033571-3	chr5	68033057	68034057	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	1722.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	12.59	12.9	14.8	3.37	7.0	1.61	12.67	10.17	6.25
Merged-chr7-143044696-1	chr7	143044196	143045196	+	970.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	MT2A|LTR|ERVL	-8054.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	33.75	23.04	43.47	35.09	25.66	40.99	24.29	19.01	26.85
Merged-chr1-34460288-3	chr1	34459812	34460812	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 1 of 14)	intron (NM_011206, intron 1 of 14)	566.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	53.77	30.87	16.65	31.04	31.26	15.27	22.18	26.09	28.1
Merged-chr10-34207806-3	chr10	34207300	34208300	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172508)	promoter-TSS (NM_172508)	-249.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	151.02	129.94	142.44	151.14	87.24	180.85	142.59	129.11	139.89
Merged-chr11-70812583-3	chr11	70812138	70813138	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-77.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	200.22	161.74	180.37	159.91	103.56	120.57	230.25	190.57	123.66
Merged-chr9-56272468-3	chr9	56271968	56272968	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-111398.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	13.73	11.06	7.4	11.47	13.06	12.86	14.79	7.52	9.37
Merged-chr5-103376574-3	chr5	103376072	103377072	+	970.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29974.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	5.15	6.45	1.85	12.82	6.06	3.22	7.39	3.1	7.49
Merged-chr3-158061726-2	chr3	158061245	158062245	+	970.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359763, intron 11 of 13)	intron (NM_001359763, intron 11 of 13)	25063.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	82.38	97.23	74.0	87.71	79.77	64.3	114.07	143.7	77.44
Merged-chr17-29371189-3	chr17	29370691	29371691	+	970.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10277.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	22.31	12.9	12.02	12.82	7.0	17.68	14.79	5.31	16.24
Merged-chr9-114639525-3	chr9	114639043	114640043	+	970.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153585, intron 1 of 19)	intron (NM_153585, intron 1 of 19)	657.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	148.73	180.63	107.29	127.52	132.02	69.13	146.81	177.75	93.05
Merged-chr4-130807029-3	chr4	130806518	130807518	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	14481.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	72.65	66.81	76.77	87.04	104.03	116.55	111.96	114.96	58.08
Merged-chr11-22656803-3	chr11	22656306	22657306	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144523.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	40.62	59.9	24.97	52.63	43.85	25.72	77.1	52.18	32.48
Merged-chr9-27109680-3	chr9	27109167	27110167	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023277, intron 1 of 8)	intron (NM_023277, intron 1 of 8)	45754.0	NM_023277	83964.0	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	3.43	5.53	7.4	6.07	6.06	4.02	5.28	3.98	5.0
Merged-chr9-113931679-3	chr9	113931181	113932181	+	970.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001083319, exon 2 of 17)	exon (NM_001083319, exon 2 of 17)	747.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	89.81	78.79	78.62	91.76	71.84	90.83	97.17	74.73	66.2
Merged-chr19-34841892-3	chr19	34841403	34842403	+	970.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	ID_B1|SINE|B4	-21130.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	46.34	44.7	28.67	51.28	27.52	20.09	38.02	44.66	23.73
Merged-chr13-40939238-3	chr13	40938726	40939726	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	21592.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	25.74	23.5	16.65	53.98	36.85	34.56	32.74	21.22	5.0
Merged-chr12-102877707-3	chr12	102877203	102878203	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172806, intron 1 of 11)	CpG	703.0	NM_172806	238386.0	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	118.99	98.61	93.42	110.65	77.91	88.42	142.59	54.83	72.45
Merged-chr3-115695294-3	chr3	115694802	115695802	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19753.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	23.45	45.16	20.35	65.45	75.57	117.35	30.63	42.01	18.74
Merged-chr11-87471626-3	chr11	87471107	87472107	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	44016.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	65.79	23.04	16.65	41.83	20.53	20.9	33.8	22.99	18.11
Merged-chr11-21081289-3	chr11	21080800	21081800	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	-10024.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	24.6	27.65	11.1	21.59	23.33	28.94	40.14	29.18	17.49
Merged-chr3-60527095-3	chr3	60526604	60527604	+	970.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	MIRc|SINE|MIR	25925.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	115.55	138.24	77.7	168.68	124.56	81.99	189.06	278.12	69.95
Merged-chr2-32606995-3	chr2	32606513	32607513	+	970.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110347)	promoter-TSS (NR_110347)	28.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	93.82	66.81	67.52	99.86	62.05	81.18	140.47	69.42	66.82
Merged-chr14-33398267-3	chr14	33397783	33398783	+	970.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	intron (NM_001310452, intron 4 of 10)	12741.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	34.9	31.33	45.32	43.18	25.19	28.13	57.03	49.08	23.11
Merged-chr6-91703483-3	chr6	91702977	91703977	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	MIRb|SINE|MIR	19410.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	32.04	36.86	42.55	36.43	27.99	35.37	66.54	87.99	50.59
Merged-chr1-182282302-3	chr1	182281803	182282803	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360783)	promoter-TSS (NM_001360783)	-108.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	213.95	176.48	110.07	273.26	191.73	196.12	218.63	152.99	98.68
Merged-chr4-138345109-2	chr4	138344618	138345618	+	970.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028176, intron 2 of 3)	intron (NM_028176, intron 2 of 3)	-18822.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	8.58	3.23	4.62	8.77	10.26	8.84	4.22	2.65	2.5
Merged-chr13-64048701-2	chr13	64048206	64049206	+	970.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40495.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	1.14	2.76	9.25	4.72	3.27	4.82	2.11	4.86	1.25
Merged-chr5-22856637-2	chr5	22856126	22857126	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-109742.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	28.6	22.58	24.05	2.7	2.33	3.22	55.98	41.12	19.36
Merged-chr6-29781963-3	chr6	29781467	29782467	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	13524.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	36.61	48.84	27.75	33.06	28.46	34.56	33.8	35.82	32.48
Merged-chr6-7800259-2	chr6	7799764	7800764	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-44960.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	3.43	6.45	5.55	2.02	2.8	1.61	3.17	4.42	4.37
Merged-chr2-124671679-3	chr2	124671198	124672198	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	18117.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	22.31	13.82	17.57	26.31	17.73	16.88	13.73	9.73	16.86
Merged-chr6-34944660-3	chr6	34944152	34945152	+	970.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001025573)	TTS (NM_001025573)	23704.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	17.16	17.51	22.2	22.27	21.93	18.49	35.91	27.41	18.74
Merged-chr2-3760435-3	chr2	3759915	3760915	+	970.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	46957.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	23.45	21.66	7.4	26.31	16.33	14.47	13.73	12.82	4.37
Merged-chr11-59201778-3	chr11	59201268	59202268	+	970.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126101)	promoter-TSS (NR_126101)	663.0	NR_037964	72203.0	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	128.14	124.87	76.77	155.19	140.42	128.61	101.39	114.08	50.59
Merged-chr5-138187412-3	chr5	138186903	138187903	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178612)	promoter-TSS (NM_178612)	48.0	NM_001356602	21343.0	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	39.47	45.62	49.95	42.51	44.32	45.01	76.05	66.33	51.84
Merged-chr2-156719111-3	chr2	156718649	156719649	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040505, intron 1 of 3)	MTB_Mm|LTR|ERVL-MaLR	1760.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	30.32	20.27	17.57	31.71	16.79	24.11	35.91	25.65	19.98
Merged-chr7-49158672-3	chr7	49158167	49159167	+	970.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	MER112|DNA|hAT-Charlie	3491.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	45.19	37.78	5.55	90.41	76.04	53.85	69.71	54.83	51.21
Merged-chr7-4071276-3	chr7	4070802	4071802	+	970.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8098.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	53.2	40.55	45.32	68.82	52.25	66.71	51.75	63.23	54.96
Merged-chr13-51136589-3	chr13	51136097	51137097	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	2279.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	10.87	12.9	11.1	15.52	16.33	12.06	11.62	13.27	8.74
Merged-chr17-74668113-3	chr17	74667584	74668584	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 62 of 72)	intron (NM_007566, intron 62 of 72)	-49666.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	31.46	30.41	37.92	21.59	21.46	20.9	52.81	66.77	35.6
Merged-chr15-95849971-3	chr15	95849485	95850485	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-19913.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	140.15	146.99	96.2	145.74	138.09	118.96	226.02	248.06	101.17
Merged-chr12-112588697-3	chr12	112588227	112589227	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198411)	promoter-TSS (NM_198411)	-57.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	54.92	41.01	27.75	49.93	48.52	52.25	57.03	40.68	22.48
Merged-chr9-118811108-3	chr9	118810564	118811564	+	970.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	99372.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	22.88	15.21	7.4	20.92	14.0	20.9	5.28	6.19	8.74
Merged-chr11-59506417-4	chr11	59505954	59506954	+	970.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_135273, exon 1 of 4)	non-coding (NR_135273, exon 1 of 4)	186.0	NM_001291014	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	60.07	40.55	29.6	120.77	80.71	72.34	80.27	49.08	36.22
Merged-chr3-40744404-2	chr3	40743927	40744927	+	970.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	6.86	5.07	8.32	6.75	7.46	6.43	10.56	5.31	2.5
Merged-chr3-98083143-2	chr3	98082627	98083627	+	970.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	RSINE1|SINE|B4	69589.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	44.05	41.47	32.37	59.38	42.45	65.91	77.1	98.6	19.98
Merged-chr6-93127075-1	chr6	93126575	93127575	+	970.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	12.59	6.45	3.7	19.57	30.79	45.82	8.45	5.31	6.25
Merged-chr8-105291112-3	chr8	105290606	105291606	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357379, intron 8 of 12)	intron (NM_001357379, intron 8 of 12)	-1578.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	2.29	2.3	0.0	2.02	1.4	3.22	3.17	4.42	0.0
Merged-chr7-79924741-3	chr7	79924255	79925255	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027420)	TTS (NM_027420)	-4115.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	27.46	11.52	3.7	18.22	5.6	16.08	9.51	8.4	8.12
Merged-chr5-77468639-3	chr5	77468157	77469157	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131050, exon 2 of 2)	non-coding (NR_131050, exon 2 of 2)	3169.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	6.29	3.69	5.55	9.45	2.8	4.82	2.11	1.77	2.5
Merged-chr6-49107321-3	chr6	49106813	49107813	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023670, intron 8 of 14)	intron (NM_023670, intron 8 of 14)	33518.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	7.44	13.82	0.0	18.22	2.8	3.22	12.67	10.61	7.49
Merged-chr17-77969375-3	chr17	77968873	77969873	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-230875.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	5.15	9.22	7.4	6.07	12.13	22.51	3.17	9.73	1.25
Merged-chr4-149303416-3	chr4	149302914	149303914	+	970.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	4284.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	150.45	176.94	94.35	141.69	116.63	102.08	104.56	109.22	63.08
Merged-chr4-41628287-3	chr4	41627756	41628756	+	970.3253779999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175138, intron 13 of 19)	(CA)n|Simple_repeat|Simple_repeat	12046.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	29.17	19.81	14.8	18.89	11.66	16.88	21.12	10.61	17.49
Merged-chr3-60615485-5	chr3	60614968	60615968	+	970.323792	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 5 of 7)	intron (NM_001253711, intron 5 of 7)	114289.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	41.19	57.14	38.85	70.17	59.25	54.66	62.31	69.42	46.22
Merged-chr12-80324833-3	chr12	80324363	80325363	+	970.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-64482.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	110.41	87.09	100.82	128.2	102.17	90.83	115.12	130.0	56.21
Merged-chr10-95418011-3	chr10	95417507	95418507	+	970.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045339, intron 1 of 4)	intron (NR_045339, intron 1 of 4)	632.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	16.59	10.6	14.8	12.14	6.06	1.61	26.4	13.71	8.12
Merged-chr6-124874507-3	chr6	124873989	124874989	+	970.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013488, intron 3 of 9)	MTE2b|LTR|ERVL-MaLR	-10506.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	28.03	18.43	27.75	20.92	10.73	20.09	16.9	11.05	11.24
Merged-chr19-42110732-2	chr19	42110226	42111226	+	970.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145501, intron 4 of 8)	L1MC4|LINE|L1	18267.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	12.59	11.98	7.4	10.12	3.73	6.43	3.17	5.31	6.87
Merged-chr19-41371484-2	chr19	41370982	41371982	+	970.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	L1MA9|LINE|L1	13588.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	22.31	45.62	29.6	43.86	48.98	46.62	82.38	79.15	36.85
Merged-chr19-53424838-3	chr19	53424324	53425324	+	970.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34190.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	56.63	39.17	11.1	55.33	69.51	61.09	15.84	13.71	3.12
Merged-chr1-172521058-3	chr1	172520571	172521571	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027972)	promoter-TSS (NM_027972)	-59.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	27.46	13.36	18.5	17.54	7.0	9.65	28.52	19.9	3.75
Merged-chr9-89259125-3	chr9	89258619	89259619	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	47735.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	58.92	52.53	28.67	51.28	41.05	59.48	38.02	38.03	24.36
Merged-chr5-21567369-3	chr5	21566872	21567872	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	23845.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	22.31	28.57	18.5	37.78	15.86	43.4	55.98	54.39	47.46
Merged-chr12-8638887-3	chr12	8638376	8639376	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35258.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	8.58	11.52	11.1	6.75	5.6	9.65	20.07	5.31	7.49
Merged-chr11-98149731-3	chr11	98149203	98150203	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028149)	promoter-TSS (NM_028149)	-87.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	167.04	138.24	228.46	165.98	104.5	200.14	215.46	150.78	133.02
Merged-chr7-28693647-3	chr7	28693153	28694153	+	970.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207238, intron 2 of 5)	intron (NM_207238, intron 2 of 5)	509.0	NM_001163702	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	4.58	6.91	3.7	11.47	7.46	1.61	7.39	2.65	1.25
Merged-chr3-81057919-3	chr3	81057414	81058414	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	MT2A|LTR|ERVL	21498.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	61.21	47.92	37.92	93.79	47.58	66.71	62.31	48.2	42.47
Merged-chr13-42077196-3	chr13	42076691	42077691	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	25170.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	12.59	12.9	14.8	11.47	6.53	8.84	30.63	27.86	11.87
Merged-chr5-118408197-3	chr5	118407691	118408691	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-152528.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	8.58	9.68	7.4	60.05	30.32	20.9	23.24	11.94	3.75
Merged-chr1-66279371-1	chr1	66278871	66279871	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 3 of 14)	intron (NM_001039934, intron 3 of 14)	-42353.0	NM_001310634	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	49.2	45.16	32.37	4.05	4.2	4.82	3.17	7.96	3.75
Merged-chr14-70022410-3	chr14	70021916	70022916	+	970.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55029.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.58	4.15	3.7	6.75	1.87	4.82	3.17	2.65	1.25
Merged-chr15-51692918-1	chr15	51692418	51693418	+	970.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172543.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.0	2.3	0.0	5.4	7.46	8.04	2.11	0.0	4.37
Merged-chr3-142478564-2	chr3	142478051	142479051	+	970.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18383.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	1.72	3.69	1.85	3.37	4.2	0.8	3.17	1.77	3.75
Merged-chr12-52424807-3	chr12	52424291	52425291	+	970.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55818.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	15.45	17.51	14.8	18.22	9.33	8.84	12.67	11.94	17.49
Merged-chr7-127206825-3	chr7	127206309	127207309	+	970.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144522, intron 1 of 8)	intron (NM_144522, intron 1 of 8)	1659.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	33.75	38.71	76.77	29.69	23.33	40.19	57.03	51.29	38.1
Merged-chr13-52585191-3	chr13	52584669	52585669	+	970.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	LTR65|LTR|ERV1	1732.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	118.99	129.02	78.62	139.67	152.08	138.25	126.74	128.67	83.69
Merged-chr14-100224389-3	chr14	100223884	100224884	+	970.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74588.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.86	3.69	1.85	11.47	3.73	17.68	6.34	1.77	1.87
Merged-chr15-6242307-3	chr15	6241789	6242789	+	970.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57500.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	12.01	17.51	15.72	29.69	11.2	15.27	16.9	10.61	18.11
Merged-chr2-11542831-3	chr2	11542335	11543335	+	970.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	B3A|SINE|B2	11094.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	9.72	3.69	1.85	5.4	1.4	1.61	5.28	2.21	1.25
Merged-chr5-124022531-3	chr5	124022046	124023046	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	9714.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	206.51	153.9	122.09	198.37	163.28	127.0	243.98	271.49	113.04
Merged-chr7-27979294-3	chr7	27978725	27979725	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081021)	promoter-TSS (NM_001081021)	-68.0	NM_001081021	338354.0	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	82.95	133.63	112.84	74.89	113.36	115.75	95.06	70.3	49.34
Merged-chr19-6871820-3	chr19	6871302	6872302	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13591.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	199.65	182.47	195.17	145.06	96.57	183.26	288.34	310.84	149.26
Merged-chr11-54140201-3	chr11	54139717	54140717	+	970.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	39293.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	11.44	29.95	43.47	28.34	59.71	60.28	20.07	22.11	31.23
Merged-chr4-8822713-2	chr4	8822201	8823201	+	970.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	71377.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.72	6.91	6.47	8.1	15.39	20.9	12.67	12.38	5.62
Merged-chr12-111694496-2	chr12	111693991	111694991	+	970.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16386.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.57	1.38	0.92	126.85	101.23	118.96	152.09	143.26	104.92
Merged-chr4-88390167-3	chr4	88389662	88390662	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 35 of 43)	intron (NM_001081184, intron 35 of 43)	48764.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	73.79	49.3	40.7	107.28	54.58	61.89	118.29	84.45	42.47
Merged-chr13-24614585-3	chr13	24614111	24615111	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	5.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	26.89	27.19	7.4	16.87	14.0	17.68	20.07	13.27	9.99
Merged-chr13-102700344-3	chr13	102699848	102700848	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	6790.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	89.81	92.16	64.75	68.82	34.52	54.66	99.28	91.97	39.35
Merged-chr14-27562818-3	chr14	27562314	27563314	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-54354.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	11.44	15.67	14.8	18.22	11.66	28.13	17.96	15.03	21.86
Merged-chr17-34239919-3	chr17	34239410	34240410	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	1005.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	26.89	25.8	52.72	20.24	19.13	36.17	90.83	125.58	81.81
Merged-chr2-6335568-3	chr2	6335073	6336073	+	970.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	12816.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	45.19	37.78	36.07	60.72	63.45	50.64	81.33	63.23	34.97
Merged-chr2-128359224-3	chr2	128358715	128359715	+	970.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	ORR1D2|LTR|ERVL-MaLR	70136.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	53.77	35.94	26.82	68.82	42.92	96.45	42.25	55.71	38.72
Merged-chr13-37894398-1	chr13	37893898	37894898	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	5527.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	10.3	10.6	12.02	20.24	10.26	19.29	17.96	9.29	6.25
Merged-chr19-47003903-1	chr19	47003403	47004403	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	Lx8b|LINE|L1	-10795.0	NM_146100	226180.0	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	15.45	11.98	18.5	18.22	8.4	17.68	10.56	2.21	1.25
Merged-chr13-52603462-3	chr13	52602970	52603970	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	6588.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	164.18	104.6	75.85	231.43	167.48	154.33	110.9	103.02	56.21
Merged-chr8-108820741-1	chr8	108820241	108821241	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	106097.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	14.3	6.45	2.77	11.47	9.33	4.82	2.11	5.75	0.0
Merged-chr19-41445849-3	chr19	41445345	41446345	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60775.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	76.08	64.97	55.5	71.52	56.91	61.09	54.92	53.94	25.61
Merged-chr4-59362805-3	chr4	59362284	59363284	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	75849.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	174.48	191.69	96.2	194.32	195.0	188.89	127.8	133.53	66.2
Merged-chr14-33337360-1	chr14	33336860	33337860	+	970.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	73664.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.58	5.53	3.7	4.05	1.87	3.22	4.22	3.54	1.25
Merged-chr18-25546106-1	chr18	25545606	25546606	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	133642.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.29	6.91	5.55	4.05	1.4	3.22	2.11	5.75	0.0
Merged-chr1-34855200-3	chr1	34854709	34855709	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	MTD-int|LTR|ERVL-MaLR	5220.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	53.2	64.51	49.02	82.99	61.11	62.7	145.75	161.83	56.83
Merged-chr4-34958534-3	chr4	34958043	34959043	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-47062.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	5.72	1.38	0.92	5.4	1.4	0.0	3.17	1.77	5.0
Merged-chr17-50522651-2	chr17	50522159	50523159	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	13112.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	16.02	13.82	12.95	18.22	8.86	11.25	6.34	5.31	7.49
Merged-chr11-102578882-3	chr11	102578392	102579392	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040286, exon 2 of 3)	non-coding (NR_040286, exon 2 of 3)	227.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	6.29	3.69	9.25	2.02	3.27	7.23	3.17	0.88	0.0
Merged-chr14-57407702-5	chr14	57407224	57408224	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9241.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	36.04	37.78	22.2	89.06	67.64	36.17	46.47	30.07	26.23
Merged-chr16-95704706-3	chr16	95704203	95705203	+	970.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	2296.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	26.89	31.79	7.4	16.19	15.39	20.9	14.79	10.61	27.48
Merged-chr1-77896436-1	chr1	77895936	77896936	+	970.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	300700.0	NM_001159520	18505.0	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	4.58	0.92	3.7	4.05	4.2	4.82	3.17	0.44	3.75
Merged-chr5-64360771-3	chr5	64360265	64361265	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107177.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	13.73	13.82	12.02	42.51	32.19	27.33	17.96	20.34	16.86
Merged-chr9-32540866-3	chr9	32540347	32541347	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	CpG	605.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	425.61	465.85	397.73	374.47	417.99	371.35	315.8	380.71	238.57
Merged-chr14-55794053-3	chr14	55793549	55794549	+	969.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5192.0	NM_001164108	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	141.3	129.94	79.55	105.26	80.24	108.51	124.63	138.84	43.09
Merged-chr15-58829076-3	chr15	58828566	58829566	+	969.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5639.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	14.3	5.07	0.92	10.8	4.67	12.86	5.28	4.42	7.49
Merged-chr4-123564674-3	chr4	123564177	123565177	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51743.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	208.23	281.54	185.92	263.14	210.86	210.59	247.15	300.67	149.89
Merged-chr7-127776571-3	chr7	127776083	127777083	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178029)	promoter-TSS (NM_178029)	-806.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	145.3	147.45	119.32	113.35	135.75	143.88	122.52	144.59	117.41
Merged-chr1-194989193-3	chr1	194988697	194989697	+	969.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12238.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	15.45	11.98	17.57	11.47	10.26	14.47	16.9	17.69	9.99
Merged-chr19-23151749-3	chr19	23151261	23152261	+	969.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	2330.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	7.44	5.99	0.0	14.17	8.86	14.47	10.56	9.29	5.0
Merged-chr14-121906596-3	chr14	121906085	121907085	+	969.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 2 of 8)	intron (NM_026861, intron 2 of 8)	9189.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	62.35	72.8	70.3	66.12	71.84	75.56	36.97	50.85	39.97
Merged-chr3-40745968-2	chr3	40745478	40746478	+	969.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	365.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	48.05	50.23	37.0	90.41	76.51	53.05	86.61	88.43	39.97
Merged-chr10-128781216-3	chr10	128780730	128781730	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9680.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	97.25	86.63	49.02	110.65	95.17	73.14	78.16	86.22	33.72
Merged-chr10-121599509-1	chr10	121599009	121600009	+	969.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 22 of 24)	intron (NM_001359618, intron 22 of 24)	-12715.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	5.15	0.46	3.7	2.02	2.33	4.82	12.67	13.27	10.62
Merged-chr4-155892225-3	chr4	155891731	155892731	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	356.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	109.83	119.34	131.34	80.97	119.89	98.06	115.12	113.64	73.69
Merged-chr1-165741837-3	chr1	165741330	165742330	+	969.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21928.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	17.73	14.28	19.42	16.87	6.53	16.08	19.01	19.01	14.99
Merged-chr11-78178641-3	chr11	78178209	78179209	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106113)	promoter-TSS (NR_106113)	51.0	NM_026708	68385.0	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	38.33	21.2	17.57	36.43	39.65	44.21	41.19	28.74	26.85
Merged-chr12-100439457-3	chr12	100438958	100439958	+	969.7777710000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	ORR1E|LTR|ERVL-MaLR	81364.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	46.34	69.58	60.12	72.19	82.57	77.16	60.2	34.05	44.97
Merged-chr12-112517142-3	chr12	112516648	112517648	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-5988.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	8.01	10.6	11.1	13.49	19.13	20.09	14.79	22.11	8.74
Merged-chr9-57525805-3	chr9	57525309	57526309	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	ID_B1|SINE|B4	4577.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	28.6	38.25	29.6	21.59	45.72	34.56	41.19	49.96	31.85
Merged-chr17-37083556-3	chr17	37083034	37084034	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2702.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	21.74	6.91	3.7	3.37	0.93	1.61	1.06	1.33	0.0
Merged-chr12-35038795-3	chr12	35038292	35039292	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8397.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	117.84	158.51	73.07	103.91	105.9	81.18	91.89	116.73	81.81
Merged-chr10-99247329-3	chr10	99246838	99247838	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-15893.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.86	3.69	0.0	8.77	2.8	6.43	16.9	6.63	2.5
Merged-chr6-92101189-3	chr6	92100695	92101695	+	969.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347342, intron 1 of 14)	intron (NM_001347342, intron 1 of 14)	8762.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	17.16	17.51	16.65	19.57	15.39	18.49	15.84	16.36	23.11
Merged-chr13-5911643-3	chr13	5911156	5912156	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	50167.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	2.29	6.91	9.25	6.75	5.13	2.41	3.17	3.54	6.87
Merged-chr14-62892708-3	chr14	62892212	62893212	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27170.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	33.18	33.18	44.4	29.69	18.66	18.49	73.93	56.6	41.84
Merged-chr19-17125580-3	chr19	17125098	17126098	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181348, exon 9 of 20)	exon (NM_181348, exon 9 of 20)	169480.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	41.19	63.59	66.6	51.28	63.45	62.7	50.7	48.2	37.47
Merged-chr13-30698091-3	chr13	30697596	30698596	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	38037.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	107.55	105.52	38.85	89.74	54.11	59.48	53.87	61.9	59.95
Merged-chr18-36471080-3	chr18	36470541	36471541	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16546.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	85.24	75.11	42.55	94.46	78.37	65.11	82.38	86.66	32.48
Merged-chr12-25215400-3	chr12	25214877	25215877	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86203.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	86.38	70.96	37.92	87.04	58.78	49.03	69.71	69.86	38.1
Merged-chr19-44294862-3	chr19	44294352	44295352	+	969.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009128, intron 1 of 5)	intron (NM_009128, intron 1 of 5)	1176.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	29.17	23.96	21.27	49.93	32.19	38.58	71.82	81.36	17.49
Merged-chr6-71208877-3	chr6	71208391	71209391	+	969.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9012.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	10.87	5.99	1.85	6.07	2.33	6.43	4.22	8.4	6.25
Merged-chr5-117509765-3	chr5	117509265	117510265	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 3 of 19)	intron (NM_001312914, intron 3 of 19)	95763.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.86	1.84	1.85	0.67	5.6	6.43	6.34	3.54	6.87
Merged-chr1-157445571-3	chr1	157445090	157446090	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12978.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	36.04	38.25	39.77	53.98	36.39	45.01	39.08	47.31	39.35
Merged-chr4-35994192-3	chr4	35993675	35994675	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	MERVL_2A-int|LTR|ERVL	-148971.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	14.87	15.21	23.12	14.17	19.13	27.33	42.25	31.84	23.11
Merged-chr18-11718362-3	chr18	11717865	11718865	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 8 of 18)	intron (NM_001081223, intron 8 of 18)	61016.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	42.9	37.78	30.52	22.94	33.59	25.72	63.37	52.18	41.22
Merged-chr2-75757516-3	chr2	75757032	75758032	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52869.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	21.17	17.97	11.1	17.54	9.8	24.11	34.85	17.24	32.48
Merged-chr2-60903698-3	chr2	60903186	60904186	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-22248.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	27.46	33.18	34.22	30.36	31.26	27.33	49.64	48.2	34.97
Merged-chr18-34865276-3	chr18	34864847	34865847	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007913)	TTS (NM_007913)	4140.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	7.44	3.23	3.7	4.05	4.2	4.82	5.28	1.77	3.75
Merged-chr11-50285395-3	chr11	50284914	50285914	+	969.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	RLTR20B2|LTR|ERVK	6922.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	72.65	80.64	51.8	62.75	50.85	69.13	65.48	71.19	46.22
Merged-chr7-101871539-3	chr7	101871059	101872059	+	969.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008034)	promoter-TSS (NM_008034)	-771.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	57.21	53.45	55.5	45.88	35.92	61.09	64.43	75.61	76.19
Merged-chr8-111525362-3	chr8	111524880	111525880	+	969.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3273.0	NM_176923	319481.0	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	22.88	19.35	17.57	11.47	8.4	8.04	13.73	8.4	13.74
Merged-chr7-79920647-3	chr7	79920148	79921148	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	-8.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	26.31	23.5	40.7	24.29	29.39	43.4	26.4	16.36	8.12
Merged-chr17-17600189-3	chr17	17599691	17600691	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	24298.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	58.35	87.09	50.87	56.0	73.71	41.8	130.97	129.55	62.45
Merged-chr19-6459688-3	chr19	6459189	6460189	+	969.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205235, intron 6 of 21)	intron (NM_001205235, intron 6 of 21)	40951.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	16.59	2.76	1.85	3.37	6.06	8.04	4.22	6.63	2.5
Merged-chr9-44514293-3	chr9	44513791	44514791	+	969.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	12130.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	59.49	52.53	32.37	60.05	39.19	61.09	51.75	46.43	29.35
Merged-chr1-181232472-3	chr1	181231960	181232960	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20482.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	106.4	106.9	84.17	124.15	115.69	138.25	113.01	106.12	73.07
Merged-chrX-74425393-3	chrX	74424880	74425880	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161421, intron 1 of 10)	intron (NM_001161421, intron 1 of 10)	768.0	NM_001136067	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	60.64	86.63	61.97	70.85	77.44	98.87	76.05	106.12	54.33
Merged-chrX-99464220-3	chrX	99463716	99464716	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6519.0	NM_001083110	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	2.86	2.76	3.7	3.37	1.87	0.0	4.22	2.21	1.87
Merged-chr19-4164694-3	chr19	4164187	4165187	+	969.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134148, exon 10 of 10)	3' UTR (NM_134148, exon 10 of 10)	-1304.0	NR_153659	58988.0	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	S6K-beta-2|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	57.21	47.46	55.5	57.35	29.39	57.87	41.19	53.5	49.96
Merged-chr10-17724207-3	chr10	17723658	17724658	+	969.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010828, exon 2 of 2)	exon (NM_010828, exon 2 of 2)	930.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	64.64	70.04	87.87	72.87	66.71	95.65	80.27	61.46	80.56
Merged-chr7-101028722-3	chr7	101028236	101029236	+	969.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16683.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	41.19	16.59	16.65	27.66	21.93	36.97	25.35	4.86	5.0
Merged-chr2-181275494-2	chr2	181274977	181275977	+	969.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	12489.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	57.78	43.77	51.8	197.69	159.08	199.34	257.71	314.38	132.4
Merged-chr4-13127258-2	chr4	13126754	13127754	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	220417.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	6.86	1.38	3.7	7.42	7.46	9.65	2.11	8.84	1.25
Merged-chr8-56285074-3	chr8	56284562	56285562	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-9490.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	34.9	49.76	41.62	44.53	55.05	69.93	61.26	49.96	55.58
Merged-chr12-85288607-3	chr12	85288124	85289124	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172414)	promoter-TSS (NM_172414)	33.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	115.55	111.05	43.47	120.1	93.77	68.32	63.37	51.73	37.47
Merged-chr13-109441644-3	chr13	109441142	109442142	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116898.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	6.86	7.37	6.47	10.12	12.6	20.9	1.06	3.1	3.75
Merged-chr14-54222501-1	chr14	54222001	54223001	+	969.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31428.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	2.29	1.38	2.77	0.67	2.8	4.02	10.56	8.84	0.62
Merged-chr1-174042691-3	chr1	174042189	174043189	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146717, exon 1 of 1)	exon (NM_146717, exon 1 of 1)	756.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	14.3	13.36	5.55	42.51	20.99	32.15	49.64	42.45	22.48
Merged-chr6-118179759-3	chr6	118179273	118180273	+	969.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080780, intron 4 of 18)	intron (NM_001080780, intron 4 of 18)	17971.0	NM_009050	19713.0	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	3.43	5.99	5.55	8.1	2.33	4.82	1.06	2.21	8.74
Merged-chr19-4061283-3	chr19	4060787	4061787	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1840.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	95.53	116.58	88.8	126.17	104.5	126.19	96.11	107.0	101.17
Merged-chr1-59317607-3	chr1	59317110	59318110	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356389, intron 10 of 13)	intron (NM_001356389, intron 10 of 13)	60704.0	NM_001356389	271697.0	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	14.3	5.53	17.57	6.07	5.6	4.02	5.28	3.54	3.75
Merged-chr9-7556475-3	chr9	7555965	7556965	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	14.3	6.45	0.92	8.1	7.93	24.11	10.56	5.75	9.99
Merged-chr3-31417142-3	chr3	31416629	31417629	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106810.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	9.72	5.53	0.0	17.54	14.46	28.94	13.73	4.42	5.0
Merged-chr10-68275551-3	chr10	68275053	68276053	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3173.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	335.8	327.62	104.52	275.96	250.05	162.37	285.17	398.39	141.77
Merged-chr2-167060509-3	chr2	167060012	167061012	+	969.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2422.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	145.3	175.1	143.37	194.99	132.95	116.55	237.64	331.18	134.9
Merged-chr5-97062297-2	chr5	97061797	97062797	+	969.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49299.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	18.31	15.67	5.55	27.66	18.66	30.54	40.14	40.68	29.98
Merged-chr9-3000084-3	chr9	2999575	3000575	+	969.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	38668.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	115.55	525.29	193.32	110.65	557.48	219.43	311.57	243.19	231.08
Merged-chr6-54143539-3	chr6	54143037	54144037	+	969.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	103605.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	21.17	15.67	3.7	24.29	12.13	24.11	25.35	25.2	17.49
Merged-chr11-120800261-3	chr11	120799778	120800778	+	969.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3883.0	NM_026824	68730.0	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	9.15	8.75	12.95	30.36	14.93	12.06	7.39	5.31	3.75
Merged-chr15-100304768-3	chr15	100304215	100305215	+	969.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027334)	promoter-TSS (NM_027334)	-102.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	82.38	105.06	99.89	108.63	87.24	103.69	122.52	115.85	71.82
Merged-chr1-94582700-2	chr1	94582189	94583189	+	969.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214753.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	30.89	26.73	11.1	41.83	24.26	32.96	26.4	25.2	31.85
Merged-chr17-85495546-1	chr17	85495046	85496046	+	969.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122850.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	1.14	2.3	1.85	2.02	5.6	1.61	4.22	7.96	1.25
Merged-chr12-24493622-3	chr12	24493120	24494120	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4961.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	43.48	30.87	35.15	61.4	42.45	64.3	55.98	38.03	25.61
Merged-chr2-50687507-3	chr2	50687025	50688025	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-222159.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	45.19	35.94	33.3	46.56	45.25	61.89	60.2	34.05	18.74
Merged-chr5-31571540-3	chr5	31571041	31572041	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102275)	promoter-TSS (NR_102275)	-144.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	6.86	5.53	11.1	12.14	3.73	3.22	6.34	1.33	6.25
Merged-chr7-126809183-3	chr7	126808666	126809666	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7719.0	NM_026884	68952.0	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	12.59	6.91	10.17	5.4	6.53	12.06	17.96	11.94	6.25
Merged-chr17-31305652-3	chr17	31305148	31306148	+	969.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	9424.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	66.36	50.69	26.82	78.94	41.52	33.76	118.29	82.24	24.98
Merged-chr7-143056118-3	chr7	143055626	143056626	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-2440.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	35.47	33.64	40.7	38.46	29.86	54.66	29.57	42.89	38.72
Merged-chr14-100211291-3	chr14	100210804	100211804	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61508.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	5.15	3.69	14.8	15.52	4.67	9.65	13.73	5.31	11.24
Merged-chr10-41385658-3	chr10	41385162	41386162	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64696.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	84.09	104.6	81.4	89.74	98.43	93.24	114.07	103.91	84.31
Merged-chr15-97821537-3	chr15	97821042	97822042	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-6679.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	114.41	76.49	41.62	123.47	67.18	34.56	49.64	39.8	6.25
Merged-chr2-13543805-3	chr2	13543310	13544310	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	854.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	156.74	179.71	80.47	161.26	132.02	89.22	158.43	202.95	99.3
Merged-chr15-62104790-3	chr15	62104276	62105276	+	969.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	65519.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	18.31	12.9	14.8	24.29	14.46	20.9	9.51	10.61	8.12
Merged-chr4-132270189-5	chr4	132269652	132270652	+	969.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002865)	promoter-TSS (NR_002865)	34.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	252.28	208.74	117.47	197.02	196.87	104.49	224.97	208.26	108.67
Merged-chr4-101721941-3	chr4	101721449	101722449	+	969.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 1 of 18)	L2a|LINE|L2	4542.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	12.59	20.27	5.55	29.69	42.92	36.97	29.57	36.7	29.98
Merged-chr8-70626350-3	chr8	70625855	70626855	+	969.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	5740.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	26.89	23.96	22.2	37.78	22.39	39.39	21.12	15.03	21.86
Merged-chr13-57973720-3	chr13	57973210	57974210	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	49490.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	18.31	27.19	11.1	18.22	19.13	16.88	26.4	21.22	14.99
Merged-chr18-64987044-3	chr18	64986528	64987528	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-36499.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	25.74	23.04	30.52	20.92	14.46	15.27	40.14	32.72	24.98
Merged-chr9-66908177-3	chr9	66907667	66908667	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11538.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	84.66	132.25	83.25	104.58	114.29	117.35	79.21	86.66	85.56
Merged-chr9-44513281-3	chr9	44512784	44513784	+	969.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007551, exon 2 of 2)	exon (NM_007551, exon 2 of 2)	13137.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	72.65	54.37	61.05	70.85	48.52	72.34	53.87	51.73	59.33
Merged-chr5-24596824-4	chr5	24596347	24597347	+	969.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025891, exon 3 of 13)	exon (NM_025891, exon 3 of 13)	4733.0	NR_030423	735264.0		NR_030423	ENSMUSG00000076387	Mir671	Mirn671|mmu-mir-671	microRNA 671	ncRNA	53.77	45.62	67.52	16.87	20.06	44.21	24.29	35.37	19.36
Merged-chr7-126949932-3	chr7	126949420	126950420	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252567)	promoter-TSS (NM_001252567)	-338.0	NM_001361488	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	5.72	0.92	5.55	3.37	1.87	1.61	6.34	2.21	3.75
Merged-chr17-56443417-3	chr17	56442906	56443906	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 6 of 27)	intron (NM_001252455, intron 6 of 27)	18815.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	11.44	8.75	11.1	12.82	11.2	18.49	9.51	7.07	12.49
Merged-chr16-30968624-3	chr16	30968150	30969150	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	112782.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	85.24	42.85	38.85	95.14	68.58	69.93	26.4	19.01	21.23
Merged-chr4-32359369-1	chr4	32358869	32359869	+	969.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58066.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	71.51	61.28	43.47	94.46	85.84	65.11	11.62	7.96	8.12
Merged-chr2-132607893-3	chr2	132607396	132608396	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	9700.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	25.17	23.04	12.95	34.41	13.06	17.68	14.79	18.13	9.99
Merged-chr18-4921510-3	chr18	4921004	4922004	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109018.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	41.76	57.6	99.89	54.65	89.57	99.67	49.64	44.66	45.59
Merged-chr7-27577137-3	chr7	27576619	27577619	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175107, intron 8 of 9)	Lx8|LINE|L1	-14433.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	42.9	38.25	50.87	28.34	23.79	49.83	94.0	115.85	68.07
Merged-chr12-45011613-3	chr12	45011131	45012131	+	969.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62852.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	3.43	1.84	0.0	2.02	2.8	5.63	2.11	0.88	1.25
Merged-chrX-11437681-2	chrX	11437175	11438175	+	969.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109853.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	10.87	13.36	23.12	5.4	6.06	13.66	5.28	8.4	21.23
Merged-chr5-64269681-2	chr5	64269197	64270197	+	969.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	39340.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	5.15	2.3	5.55	53.3	53.65	50.64	50.7	65.44	27.48
Merged-chr1-165708067-3	chr1	165707552	165708552	+	969.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178593)	promoter-TSS (NM_178593)	42.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	125.28	109.67	118.39	115.38	96.57	144.68	153.15	137.51	109.29
Merged-chr8-69071233-3	chr8	69070761	69071761	+	969.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153054, intron 5 of 16)	intron (NM_153054, intron 5 of 16)	-17475.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	32.04	29.03	24.97	74.89	44.78	81.18	21.12	25.2	14.36
Merged-chr10-40301532-3	chr10	40301051	40302051	+	969.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009665, intron 1 of 7)	CpG	635.0	NM_007444	100041585.0	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3	S-adenosylmethionine decarboxylase 2	protein-coding	155.6	127.18	135.04	144.39	101.7	147.09	173.21	149.45	79.94
Merged-chr13-74463298-3	chr13	74462781	74463781	+	969.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30669.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	43.48	61.75	76.77	66.12	52.25	89.22	77.1	72.52	54.33
Merged-chr2-19666047-3	chr2	19665541	19666541	+	969.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7979.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	5.15	5.07	8.32	10.8	3.73	3.22	2.11	12.38	7.49
Merged-chr11-21220917-3	chr11	21220421	21221421	+	969.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18111.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	25.17	23.04	9.25	21.59	16.33	21.7	26.4	22.55	16.24
Merged-chr13-98255220-3	chr13	98254736	98255736	+	969.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178918, intron 6 of 12)	intron (NM_178918, intron 6 of 12)	7756.0	NM_178918	105372.0	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	13.16	8.29	4.62	13.49	8.86	3.22	24.29	15.92	9.99
Merged-chr18-62059236-3	chr18	62058756	62059756	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106181.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	40.62	29.95	36.07	35.09	23.33	28.13	58.09	40.24	36.22
Merged-chr19-29468853-3	chr19	29468355	29469355	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	53132.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	92.1	82.48	57.35	122.8	91.9	80.38	146.81	119.83	59.95
Merged-chr12-25157389-3	chr12	25156903	25157903	+	969.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28229.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	6.86	7.37	7.4	12.14	1.87	1.61	6.34	3.54	0.0
Merged-chr8-79447557-3	chr8	79447044	79448044	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48076.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	32.04	35.02	38.85	28.34	24.72	40.19	33.8	25.2	28.73
Merged-chr16-91413332-3	chr16	91412827	91413827	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 3 of 6)	intron (NM_008349, intron 3 of 6)	7092.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	123.56	110.13	102.67	165.98	95.63	128.61	161.6	154.76	93.05
Merged-chr17-26502013-3	chr17	26501523	26502523	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6449.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	131.0	89.85	51.8	115.38	82.57	68.32	72.88	59.69	48.09
Merged-chr15-59439620-3	chr15	59439129	59440129	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	65431.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	32.04	41.47	39.77	74.89	76.04	53.85	39.08	49.08	21.86
Merged-chr16-31200056-3	chr16	31199543	31200543	+	969.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	1195.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	168.76	137.31	160.02	149.11	133.42	164.78	163.71	160.06	124.28
Merged-chr5-134520179-5	chr5	134519658	134520658	+	969.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 3 of 15)	URR1B|DNA|hAT-Charlie	32276.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	117.27	90.77	67.52	141.69	100.77	81.99	123.57	154.76	55.58
Merged-chr6-134274094-1	chr6	134273594	134274594	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-122235.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	9.72	3.69	1.85	4.05	5.13	4.82	3.17	0.0	11.24
Merged-chr11-96874986-1	chr11	96874486	96875486	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24593.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	4.58	4.15	0.0	25.64	15.86	12.86	55.98	44.22	31.85
Merged-chr19-31950995-3	chr19	31950487	31951487	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82226.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	21.74	17.05	11.1	29.01	17.73	12.06	19.01	9.73	8.74
Merged-chr1-121430697-1	chr1	121430197	121431197	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001025156)	promoter-TSS (NM_001025156)	-370.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	80.09	111.05	91.57	38.46	34.06	60.28	104.56	61.9	48.71
Merged-chr7-101618528-3	chr7	101618040	101619040	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-37379.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	46.91	50.23	39.77	68.82	79.77	86.81	165.82	183.94	43.72
Merged-chr17-63826981-3	chr17	63826480	63827480	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37001.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	1.72	5.99	5.55	0.67	4.2	2.41	3.17	4.42	2.5
Merged-chr17-7399154-1	chr17	7398654	7399654	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-13849.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	2.29	0.0	0.92	4.72	2.8	7.23	21.12	10.61	10.62
Merged-chr2-165917779-1	chr2	165917279	165918279	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32941.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	166.47	147.45	122.09	169.35	128.76	106.1	209.12	268.4	74.94
Merged-chr8-115407732-1	chr8	115407232	115408232	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	299162.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.15	4.61	3.7	6.75	6.06	3.22	4.22	2.65	6.25
Merged-chr1-127135473-2	chr1	127134976	127135976	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69510.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	26.31	22.12	24.05	26.31	20.53	45.82	25.35	19.01	18.11
Merged-chr15-59643080-3	chr15	59642590	59643590	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5564.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	26.89	23.96	16.65	19.57	14.0	4.82	33.8	26.09	17.49
Merged-chr5-127608741-2	chr5	127608235	127609235	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	8657.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	40.04	61.75	52.72	43.86	58.78	79.58	66.54	51.73	82.44
Merged-chr11-106778879-1	chr11	106778379	106779379	+	969.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_148430, exon 1 of 8)	non-coding (NR_148430, exon 1 of 8)	587.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	177.91	163.12	128.57	163.96	190.34	143.88	130.97	164.49	114.91
Merged-chr13-9094822-1	chr13	9094322	9095322	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	941.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	274.59	217.49	205.34	282.71	248.65	193.71	271.44	267.51	121.78
Merged-chr4-136892423-1	chr4	136891923	136892923	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_007574, exon 2 of 3)	exon (NM_007574, exon 2 of 3)	491.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	140.15	147.91	140.59	93.79	111.96	170.4	202.79	202.51	147.39
Merged-chr7-127375768-1	chr7	127375268	127376268	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_175560, exon 1 of 3)	exon (NM_175560, exon 1 of 3)	282.0	NM_175560	269997.0	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	26.31	30.41	30.52	41.83	46.65	49.03	43.3	30.95	26.23
Merged-chr9-24349692-3	chr9	24349189	24350189	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153451.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	13.16	12.44	3.7	9.45	7.46	12.86	13.73	7.52	17.49
Merged-chr17-35762800-3	chr17	35762316	35763316	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9634.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	8.58	5.99	8.32	15.52	6.53	0.8	19.01	10.17	12.49
Merged-chr9-96630970-3	chr9	96630421	96631421	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 1 of 23)	CpG	582.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	125.85	51.15	50.87	125.5	49.45	44.21	87.66	23.88	30.6
Merged-chr10-7260671-1	chr10	7260171	7261171	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48434.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	11.44	12.9	8.32	40.48	26.59	28.94	6.34	8.84	4.37
Merged-chr1-162207384-3	chr1	162206907	162207907	+	969.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-10216.0	NR_002870	474332.0	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	24.03	21.2	3.7	41.16	27.52	25.72	11.62	12.82	14.36
Merged-chr15-33265883-1	chr15	33265383	33266383	+	969.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 3 of 7)	L2c|LINE|L2	140056.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	30.32	41.47	32.37	20.24	24.26	30.54	22.18	27.86	30.6
Merged-chr19-4396554-3	chr19	4396071	4397071	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001001984, exon 1 of 21)	5' UTR (NM_001001984, exon 1 of 21)	506.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	557.75	476.45	357.96	453.41	437.12	334.38	421.42	410.77	262.93
Merged-chr12-111470601-3	chr12	111470073	111471073	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15250.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	12.59	11.06	0.92	10.12	5.13	12.86	12.67	11.05	11.87
Merged-chr10-130231632-3	chr10	130231114	130232114	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20486.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	6.86	4.15	1.85	6.75	10.26	16.88	6.34	6.63	8.12
Merged-chr3-115763440-3	chr3	115762959	115763959	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48404.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	53.2	65.89	35.15	62.07	84.44	90.02	59.15	63.67	44.34
Merged-chr3-119806308-3	chr3	119805785	119806785	+	968.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-22897.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	15.45	4.61	3.7	6.75	2.33	3.22	10.56	6.63	1.25
Merged-chr6-129559420-3	chr6	129558901	129559901	+	968.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18885.0	NM_153590	243655.0	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	5.72	6.45	4.62	10.8	1.87	4.82	3.17	2.65	3.12
Merged-chr4-155162903-3	chr4	155162369	155163369	+	968.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59666.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	50.34	52.99	35.15	56.0	39.65	41.8	43.3	34.49	35.6
Merged-chr8-13504288-4	chr8	13503765	13504765	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9730.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	52.63	59.9	33.3	91.76	65.78	61.09	41.19	36.7	24.98
Merged-chr15-24990262-3	chr15	24989763	24990763	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	423501.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	10.3	5.07	5.55	12.14	4.2	6.43	11.62	7.52	5.62
Merged-chr6-116631154-3	chr6	116630656	116631656	+	968.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2157.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	24.03	10.6	7.4	22.27	3.73	19.29	20.07	7.96	13.12
Merged-chr6-87812619-3	chr6	87812117	87813117	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104478)	promoter-TSS (NR_104478)	-453.0	NR_104478	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	84.66	52.07	70.3	75.57	57.38	48.23	57.03	65.0	40.59
Merged-chr2-128373603-3	chr2	128373084	128374084	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	55767.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	252.85	201.82	127.64	234.8	162.34	219.43	236.59	203.4	141.14
Merged-chr3-107142982-3	chr3	107142495	107143495	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40148.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	21.17	22.58	23.12	68.82	58.31	45.01	110.9	118.5	31.23
Merged-chr1-191599426-3	chr1	191598905	191599905	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178632, intron 7 of 19)	intron (NM_178632, intron 7 of 19)	23769.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	22.31	17.51	18.5	26.31	23.79	30.54	32.74	30.51	19.98
Merged-chr13-52589247-3	chr13	52588741	52589741	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	5804.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	73.79	86.17	65.67	87.71	73.71	75.56	92.94	95.51	38.1
Merged-chr8-126688189-3	chr8	126687700	126688700	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94764.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.01	6.91	0.92	9.45	3.73	8.04	6.34	3.1	1.25
Merged-chr12-91589132-3	chr12	91588661	91589661	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	488.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	262.57	316.56	295.99	299.57	265.44	208.18	302.07	267.51	218.58
Merged-chr2-38484782-3	chr2	38484284	38485284	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26913.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	102.97	120.73	95.27	116.05	89.1	113.33	96.11	114.08	77.44
Merged-chr18-4315307-3	chr18	4314824	4315824	+	968.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37629.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	104.69	108.28	61.97	95.81	58.78	49.83	91.89	75.17	59.33
Merged-chr14-69141065-2	chr14	69140555	69141555	+	968.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30747.0	NM_010920	18092.0	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	3.43	5.53	1.85	10.8	5.13	5.63	2.11	1.33	6.25
Merged-chr5-64391618-3	chr5	64391130	64392130	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76312.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	24.6	19.35	24.97	27.66	13.53	24.92	16.9	8.84	16.24
Merged-chr18-7626937-3	chr18	7626410	7627410	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161620)	promoter-TSS (NM_001161620)	-47.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	5.72	5.99	23.12	3.37	1.87	3.22	24.29	19.9	18.74
Merged-chr1-87620447-4	chr1	87620060	87621060	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010566, exon 1 of 27)	exon (NM_010566, exon 1 of 27)	248.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	257.42	297.67	211.81	244.92	205.73	218.63	229.19	264.42	176.12
Merged-chrX-73930794-4	chrX	73930188	73931188	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023132, intron 1 of 10)	intron (NM_023132, intron 1 of 10)	162.0	NM_023132	19703.0	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	171.04	150.22	71.22	209.16	210.86	114.14	180.61	165.81	78.69
Merged-chr9-21610065-3	chr9	21609564	21610564	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1735.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	5.15	5.99	1.85	6.75	6.53	11.25	17.96	7.07	7.49
Merged-chr2-73453897-3	chr2	73453358	73454358	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289722)	promoter-TSS (NM_001289722)	31.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	101.83	117.96	123.94	99.18	81.17	107.71	116.18	151.66	119.91
Merged-chr5-99374660-3	chr5	99374152	99375152	+	968.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-121725.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	88.67	104.14	75.85	83.66	84.44	94.04	128.85	139.72	101.17
Merged-chr10-59236124-3	chr10	59235617	59236617	+	968.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14195.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	274.01	246.06	168.34	265.16	228.12	260.43	306.29	405.03	143.02
Merged-chr5-81019988-4	chr5	81019586	81020586	+	968.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347367)	promoter-TSS (NM_001347367)	-485.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	16.59	5.07	14.8	6.75	3.73	5.63	9.51	7.96	1.25
Merged-chr7-43614423-3	chr7	43613894	43614894	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355131, intron 3 of 3)	intron (NM_001355131, intron 3 of 3)	7225.0	NM_028913	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	22.31	15.21	14.8	24.96	18.19	16.08	46.47	26.97	25.61
Merged-chr17-5303366-4	chr17	5302893	5303893	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	115374.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	14.87	12.9	22.2	36.43	30.79	20.09	35.91	35.37	6.87
Merged-chr12-99903056-3	chr12	99902571	99903571	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18556.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	156.17	164.04	102.67	179.47	178.21	141.47	184.83	226.83	111.17
Merged-chr18-56622450-3	chr18	56621963	56622963	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34115.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.72	3.23	1.85	4.72	0.93	3.22	1.06	0.0	7.49
Merged-chr16-48833828-3	chr16	48833330	48834330	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8722.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	6.29	10.6	0.0	13.49	7.46	5.63	12.67	10.61	10.62
Merged-chr5-148465545-3	chr5	148465064	148466064	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65660.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	51.48	54.37	49.95	66.12	65.31	99.67	70.76	66.77	71.2
Merged-chr1-72428746-3	chr1	72428264	72429264	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045533, exon 4 of 4)	exon (NM_001045533, exon 4 of 4)	107800.0	NM_001045533	381270.0	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	18.31	11.52	1.85	37.78	28.92	32.96	36.97	20.34	8.12
Merged-chr9-63803251-3	chr9	63802759	63803759	+	968.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45265.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.58	7.83	5.55	5.4	4.2	3.22	5.28	6.63	3.75
Merged-chr10-17989274-3	chr10	17988769	17989769	+	968.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33821.0	NM_001359560	73112.0	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	8.01	7.37	5.55	9.45	5.6	8.04	22.18	9.29	9.99
Merged-chr2-61812021-2	chr2	61811537	61812537	+	968.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009322, exon 6 of 6)	exon (NM_009322, exon 6 of 6)	7584.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	9.15	0.46	3.7	0.0	0.47	3.22	5.28	0.44	1.25
Merged-chr2-167691580-2	chr2	167691052	167692052	+	968.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	375.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	139.58	204.59	197.02	199.04	241.18	285.34	228.14	269.28	201.1
Merged-chr8-108683908-3	chr8	108683406	108684406	+	968.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30738.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	24.03	28.57	16.65	41.16	34.06	33.76	42.25	31.84	20.61
Merged-chr9-3335575-3	chr9	3335076	3336076	+	968.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026303, intron 1 of 11)	intron (NM_026303, intron 1 of 11)	345.0	NM_026303	67667.0	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	16.59	19.81	18.5	31.04	17.26	24.11	25.35	20.78	15.61
Merged-chr3-95891954-3	chr3	95891449	95892449	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346514)	promoter-TSS (NM_001346514)	56.0	NM_153513	229600.0	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	43.48	57.14	68.45	48.58	49.45	91.63	77.1	68.09	53.08
Merged-chr8-119827969-3	chr8	119827482	119828482	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	12597.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	72.08	90.31	86.95	99.86	72.78	91.63	123.57	110.98	73.69
Merged-chr8-10706164-3	chr8	10705679	10706679	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	176275.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	27.46	30.41	18.5	66.12	56.91	70.73	25.35	16.36	7.49
Merged-chr3-61321818-3	chr3	61321300	61322300	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42707.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	21.17	6.45	0.92	10.12	7.0	9.65	13.73	8.84	9.37
Merged-chr7-101074682-3	chr7	101074118	101075118	+	968.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-34157.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	27.46	13.36	11.1	29.69	17.26	22.51	15.84	7.52	10.62
Merged-chr17-29054062-3	chr17	29053550	29054550	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21390.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	15.45	18.43	29.6	19.57	20.99	16.08	17.96	7.52	11.87
Merged-chr10-98946266-3	chr10	98945763	98946763	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	31111.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	20.59	23.04	19.42	29.01	18.19	20.9	24.29	18.13	9.37
Merged-chr11-97999376-3	chr11	97998860	97999860	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3187.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	35.47	15.21	9.25	26.99	10.26	4.82	33.8	11.94	18.74
Merged-chr3-142490645-3	chr3	142490154	142491154	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-6280.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	8.01	5.07	3.7	6.07	3.73	6.43	4.22	0.44	0.62
Merged-chr6-50112981-3	chr6	50112473	50113473	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	2113.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	25.74	24.42	7.4	17.54	17.73	35.37	17.96	20.34	26.85
Merged-chr5-24687922-3	chr5	24687420	24688420	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	2105.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	36.04	33.64	38.85	192.97	169.81	101.28	177.44	185.71	76.19
Merged-chr17-33929898-3	chr17	33929393	33930393	+	968.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-1.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	72.08	78.79	101.74	67.47	77.91	110.92	67.6	94.18	103.05
Merged-chr1-137852446-2	chr1	137851925	137852925	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-114030.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.14	3.69	1.85	10.8	16.33	12.86	13.73	11.94	7.49
Merged-chr9-89205596-2	chr9	89205098	89206098	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	-5592.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	5.15	6.45	3.7	7.42	9.33	3.22	6.34	2.21	0.0
Merged-chr1-170165107-2	chr1	170164611	170165611	+	968.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 2 of 10)	MTEa|LTR|ERVL-MaLR	9853.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	7.44	8.75	17.57	13.49	13.53	11.25	16.9	22.11	9.99
Merged-chr15-94592204-4	chr15	94591700	94592700	+	968.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2376.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	88.67	134.09	86.02	109.3	86.77	110.12	104.56	129.11	96.8
Merged-chr19-10025698-3	chr19	10025199	10026199	+	968.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	7505.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	45.19	40.55	59.2	41.83	36.85	64.3	61.26	61.02	50.59
Merged-chr11-55106788-3	chr11	55106221	55107221	+	968.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010299, intron 2 of 3)	intron (NM_010299, intron 2 of 3)	8736.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	43.48	36.86	47.17	58.03	28.46	38.58	34.85	37.58	34.35
Merged-chr4-133941647-3	chr4	133941148	133942148	+	968.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26343.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	43.48	22.58	9.25	49.25	31.72	19.29	10.56	8.4	8.74
Merged-chr7-143037525-3	chr7	143037021	143038021	+	968.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015529, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-15229.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	86.95	94.92	96.2	81.64	66.24	90.02	97.17	99.49	74.32
Merged-chr8-119926652-3	chr8	119926167	119927167	+	968.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009462, intron 1 of 13)	B1_Mur4|SINE|Alu	16307.0	NM_001310630	22224.0	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	9.15	9.22	1.85	8.77	10.26	4.82	8.45	3.54	2.5
Merged-chr11-106135323-3	chr11	106134819	106135819	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	24608.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	135.0	142.84	126.72	172.05	112.43	95.65	142.59	192.34	84.31
Merged-chr5-140814606-3	chr5	140814105	140815105	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	RMER17C|LTR|ERVK	15826.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	30.32	22.58	18.5	20.92	22.39	27.33	24.29	13.27	16.86
Merged-chr1-37872256-3	chr1	37871741	37872741	+	968.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037918)	promoter-TSS (NM_001037918)	35.0	NM_001037918	623661.0	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	13.73	12.9	25.9	18.22	21.93	20.09	20.07	10.61	6.87
Merged-chr19-60755931-3	chr19	60755446	60756446	+	968.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178421)	promoter-TSS (NM_178421)	-41.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.43	4.15	3.7	4.72	4.2	1.61	6.34	3.54	3.75
Merged-chr15-35371367-5	chr15	35370880	35371880	+	968.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177151)	promoter-TSS (NM_177151)	-166.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	183.06	240.53	225.69	165.31	209.93	197.73	231.3	233.46	133.65
Merged-chr2-70509334-1	chr2	70508834	70509834	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025744, exon 1 of 13)	exon (NM_025744, exon 1 of 13)	515.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	4.58	0.46	1.85	2.02	2.8	0.0	1.06	0.44	1.25
Merged-chr4-47272257-3	chr4	47271755	47272755	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64243.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	21.74	35.94	24.97	26.31	31.26	33.76	30.63	23.88	23.73
Merged-chr10-80350467-3	chr10	80349972	80350972	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2024.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	6.29	4.15	3.7	4.05	0.93	9.65	0.0	0.88	1.25
Merged-chr9-121286058-4	chr9	121285568	121286568	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8896.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	25.74	22.12	20.35	44.53	51.78	37.78	87.66	74.28	34.35
Merged-chr10-19999908-3	chr10	19999387	20000387	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	C-rich|Low_complexity|Low_complexity	65361.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	33.18	20.27	21.27	23.62	17.73	14.47	33.8	46.43	28.1
Merged-chr3-138144990-4	chr3	138144334	138145334	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348197, intron 1 of 8)	intron (NM_001348197, intron 1 of 8)	1035.0	NM_001348197	108943.0	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	121.28	167.73	84.17	125.5	137.62	88.42	157.37	227.72	59.33
Merged-chr2-132212463-1	chr2	132211963	132212963	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35325.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	2.29	3.23	1.85	6.75	3.27	6.43	7.39	3.98	7.49
Merged-chr5-123277510-2	chr5	123277002	123278002	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	49312.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	40.04	26.26	9.25	27.66	34.52	28.94	0.0	1.77	3.75
Merged-chr12-45092588-3	chr12	45092074	45093074	+	968.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18091.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.72	5.99	1.85	6.75	6.06	6.43	3.17	5.31	1.25
Merged-chr15-59264153-1	chr15	59263653	59264653	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42795.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	22.31	24.42	14.8	41.16	31.26	33.76	25.35	13.27	18.74
Merged-chr15-39232893-1	chr15	39232393	39233393	+	968.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	MERV1_I-int|LTR|ERV1	34607.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	12.59	7.83	1.85	13.49	24.26	8.04	9.51	9.73	6.25
Merged-chr3-89391962-3	chr3	89391493	89392493	+	968.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	76.0	NM_001355211	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	102.4	118.42	112.84	80.29	69.51	102.08	103.51	101.7	85.56
Merged-chr4-35063103-3	chr4	35062624	35063624	+	968.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-88931.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	15.45	8.29	14.8	8.1	6.06	3.22	2.11	3.98	0.0
Merged-chr2-73040199-3	chr2	73039687	73040687	+	968.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59741.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	38.33	33.64	34.22	44.53	31.72	68.32	80.27	60.58	48.09
Merged-chr5-66152428-3	chr5	66151927	66152927	+	968.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127382)	promoter-TSS (NM_001127382)	-473.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	91.53	101.83	93.42	93.79	81.64	70.73	117.24	163.16	83.06
Merged-chr10-98954729-3	chr10	98954132	98955132	+	968.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	39480.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	72.65	95.38	55.5	80.29	55.51	65.11	61.26	49.08	33.72
Merged-chr13-46134803-2	chr13	46134302	46135302	+	968.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138919.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	8.01	13.82	9.25	6.75	3.73	5.63	2.11	0.88	3.75
Merged-chr17-70835308-3	chr17	70834825	70835825	+	968.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11452.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	200.22	185.24	145.22	187.57	167.48	140.66	200.68	215.78	103.05
Merged-chr1-183221485-3	chr1	183220984	183221984	+	968.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026866)	promoter-TSS (NM_026866)	45.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	24.03	14.28	21.27	34.41	22.86	19.29	33.8	32.28	6.25
Merged-chr7-4723884-2	chr7	4723385	4724385	+	968.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177887, exon 4 of 5)	exon (NM_177887, exon 4 of 5)	1197.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	144.16	159.89	130.42	113.35	103.56	129.41	141.53	147.24	121.78
Merged-chr10-77984838-3	chr10	77984360	77985360	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026431, exon 7 of 7)	3' UTR (NM_026431, exon 7 of 7)	6210.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	7.44	6.91	12.95	6.07	6.06	8.04	2.11	5.75	2.5
Merged-chr15-27926649-3	chr15	27926155	27927155	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	99193.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	284.88	245.6	95.27	251.67	223.92	131.02	183.78	178.64	76.82
Merged-chr16-58479154-3	chr16	58478661	58479661	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	44265.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	41.76	57.14	42.55	66.8	43.39	54.66	65.48	56.6	41.84
Merged-chr14-31435337-3	chr14	31434851	31435851	+	968.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 1 of 8)	CpG	749.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	189.35	238.23	158.17	203.76	216.93	191.3	260.88	281.22	152.38
Merged-chr11-106501425-3	chr11	106500907	106501907	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030703)	TTS (NR_030703)	416.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	188.78	193.07	145.22	175.43	237.45	147.9	156.32	199.42	102.42
Merged-chr16-4782695-3	chr16	4782192	4783192	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	6770.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	22.88	14.28	18.5	27.66	9.8	9.65	21.12	14.59	6.87
Merged-chr10-75490926-3	chr10	75490433	75491433	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	26448.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	28.03	33.18	26.82	32.39	15.86	22.51	23.24	28.74	18.11
Merged-chr10-94545682-3	chr10	94545186	94546186	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-5186.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	46.91	28.57	19.42	33.06	26.12	30.54	29.57	35.37	9.37
Merged-chr9-21135716-3	chr9	21135193	21136193	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4418.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	233.97	145.61	160.02	138.99	69.51	122.98	181.66	173.77	78.69
Merged-chr10-119062217-3	chr10	119061730	119062730	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11731.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	127.57	100.45	55.5	171.38	142.75	87.61	146.81	154.76	106.79
Merged-chr3-27643255-1	chr3	27642755	27643755	+	968.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-58260.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	14.3	15.21	9.25	20.24	18.19	24.92	13.73	11.05	7.49
Merged-chr5-99254857-3	chr5	99254348	99255348	+	968.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	72.08	60.82	67.52	67.47	44.78	69.13	53.87	36.26	40.59
Merged-chr11-69998883-3	chr11	69998404	69999404	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291127, exon 3 of 4)	exon (NM_001291127, exon 3 of 4)	1442.0	NM_001291127	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	41.76	53.45	63.82	36.43	30.32	35.37	48.58	62.35	55.58
Merged-chr8-18699450-6	chr8	18698981	18699981	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007426, intron 5 of 8)	L3|LINE|CR1	42081.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	40.62	32.72	18.5	40.48	52.72	47.42	21.12	23.88	20.61
Merged-chr12-111744236-3	chr12	111743726	111744726	+	968.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-14623.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	37.76	48.84	38.85	47.9	52.25	57.87	50.7	48.64	33.72
Merged-chr19-46483789-3	chr19	46483270	46484270	+	968.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17878.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	205.94	156.21	107.29	165.31	139.02	121.37	185.89	222.41	144.89
Merged-chr2-103958348-2	chr2	103957847	103958847	+	968.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	L2b|LINE|L2	352.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	3.43	3.23	5.55	4.05	3.73	0.0	5.28	2.65	3.75
Merged-chr6-115505117-3	chr6	115504625	115505625	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39579.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	47.48	35.02	48.1	52.63	35.92	43.4	41.19	38.03	23.73
Merged-chr1-121464719-3	chr1	121464224	121465224	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 11 of 23)	intron (NM_029955, intron 11 of 23)	33657.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	105.26	112.43	95.27	36.43	24.26	18.49	81.33	93.74	59.95
Merged-chr12-112894727-2	chr12	112894222	112895222	+	968.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25819.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	64.07	47.92	38.85	49.93	29.86	39.39	19.01	11.05	13.74
Merged-chr9-108831781-3	chr9	108831263	108832263	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 2 of 36)	exon (NM_001359573, exon 2 of 36)	5718.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	3.43	3.69	5.55	6.75	2.8	4.82	8.45	7.96	4.37
Merged-chr9-48492098-3	chr9	48491584	48492584	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144948, intron 3 of 4)	intron (NM_144948, intron 3 of 4)	3246.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	40.62	30.87	55.5	36.43	27.99	40.19	25.35	23.43	24.36
Merged-chr16-18249525-3	chr16	18249027	18250027	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011239)	promoter-TSS (NM_011239)	644.0	NM_001081000	15547.0	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	223.1	223.94	276.56	162.61	210.86	244.35	200.68	199.86	148.01
Merged-chr5-17821615-3	chr5	17821120	17822120	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	14276.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	23.45	27.65	5.55	20.92	11.2	18.49	14.79	8.84	13.12
Merged-chr7-25719499-3	chr7	25718985	25719985	+	968.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028771)	promoter-TSS (NM_028771)	-432.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	93.82	91.7	86.95	115.38	99.83	110.92	145.75	162.28	69.32
Merged-chr19-24176834-1	chr19	24176334	24177334	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-2645.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	6.29	1.84	0.0	0.67	1.4	4.82	0.0	1.77	5.0
Merged-chr17-34124428-1	chr17	34123928	34124928	+	968.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010386, intron 1 of 5)	B1_Mm|SINE|Alu	-1090.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	61.21	55.75	54.57	42.51	37.79	65.11	88.72	109.66	87.43
Merged-chr3-135192084-3	chr3	135191575	135192575	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20488.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	6.29	3.69	3.7	2.02	5.13	8.04	6.34	2.65	5.62
Merged-chr2-155107447-3	chr2	155106948	155107948	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7369.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	48.62	52.53	45.32	64.77	34.06	65.91	43.3	42.45	39.35
Merged-chr2-160627407-3	chr2	160626981	160627981	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18416.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	39.47	32.72	36.07	37.11	19.59	19.29	22.18	19.01	18.11
Merged-chr15-72809201-3	chr15	72808716	72809716	+	968.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002864, exon 1 of 1)	non-coding (NR_002864, exon 1 of 1)	1108.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	49.77	79.25	21.27	40.48	55.98	49.83	34.85	53.5	46.84
Merged-chr18-39620073-2	chr18	39619583	39620583	+	968.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132838.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	21.74	12.44	19.42	43.18	28.46	32.15	33.8	61.9	25.61
Merged-chr11-26637224-2	chr11	26636712	26637712	+	968.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-43292.0	NM_001252447	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	7.44	7.83	5.55	45.21	22.39	19.29	74.99	60.58	44.97
Merged-chr18-39416582-2	chr18	39416080	39417080	+	968.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 6 of 7)	intron (NM_008173, intron 6 of 7)	70665.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	36.04	34.56	39.77	35.09	22.39	24.11	35.91	21.67	25.61
Merged-chr2-118256804-4	chr2	118256326	118257326	+	968.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027759, exon 1 of 11)	5' UTR (NM_027759, exon 1 of 11)	140.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	3.43	2.76	12.02	6.07	4.2	4.02	6.34	3.54	3.12
Merged-chr10-70287521-3	chr10	70287028	70288028	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42252.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	17.16	40.09	16.65	47.23	32.19	32.96	52.81	45.99	17.49
Merged-chr14-8080999-3	chr14	8080499	8081499	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025938, intron 1 of 5)	intron (NM_025938, intron 1 of 5)	686.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	148.73	134.09	100.82	146.41	184.74	164.78	161.6	174.21	88.68
Merged-chr3-69607063-3	chr3	69606585	69607585	+	968.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8125.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	68.65	72.34	41.62	82.32	66.71	60.28	52.81	58.81	52.46
Merged-chr13-110627835-2	chr13	110627332	110628332	+	968.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	232788.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.29	3.69	3.7	7.42	4.2	4.02	5.28	3.54	2.5
Merged-chr18-61640793-3	chr18	61640296	61641296	+	968.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045420, intron 1 of 2)	L3|LINE|CR1	1143.0	NR_045420	545261.0	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	14.87	9.22	10.17	6.07	3.27	11.25	10.56	3.98	13.74
Merged-chr6-125088794-3	chr6	125088317	125089317	+	968.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	16.02	20.27	14.8	18.89	14.93	16.88	10.56	10.17	18.11
Merged-chr10-8858398-3	chr10	8857900	8858900	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	27670.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	180.77	120.73	97.12	158.56	153.01	90.02	155.26	162.28	64.95
Merged-chr3-132115935-3	chr3	132115422	132116422	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	C-rich|Low_complexity|Low_complexity	30630.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	28.6	39.63	20.35	47.23	44.78	44.21	49.64	49.96	26.85
Merged-chr5-134102094-3	chr5	134101598	134102598	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2350.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	47.48	40.55	45.32	68.15	35.92	69.93	95.06	46.43	59.33
Merged-chr17-44076195-3	chr17	44075709	44076709	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-2593.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	50.91	54.83	56.42	11.47	5.13	5.63	55.98	64.11	43.72
Merged-chr3-86894661-3	chr3	86894168	86895168	+	968.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	26216.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	13.16	5.99	5.55	10.8	11.2	12.06	5.28	7.52	0.62
Merged-chr7-19501864-3	chr7	19501362	19502362	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6469.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	134.43	146.07	147.99	128.87	128.76	146.29	145.75	181.29	96.18
Merged-chr4-62287623-3	chr4	62287141	62288141	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025286, intron 1 of 3)	intron (NM_025286, intron 1 of 3)	1212.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	40.04	59.44	66.6	47.9	41.05	68.32	90.83	100.81	51.84
Merged-chrX-13574439-1	chrX	13573939	13574939	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 12 of 26)	intron (NM_001284503, intron 12 of 26)	-58330.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	20.02	14.28	21.27	22.27	20.99	24.92	27.46	23.43	22.48
Merged-chr7-68799140-1	chr7	68798640	68799640	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49902.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	8.58	5.53	1.85	15.52	9.8	10.45	5.28	7.52	4.37
Merged-chr6-82807279-1	chr6	82806779	82807779	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32825.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	25.17	19.81	24.05	23.62	29.86	26.53	70.76	55.71	23.73
Merged-chr11-103217890-3	chr11	103217398	103218398	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177801, intron 1 of 4)	intron (NM_177801, intron 1 of 4)	534.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	10.87	12.44	9.25	12.14	9.8	7.23	14.79	12.38	4.37
Merged-chr7-80775482-3	chr7	80774997	80775997	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	B3|SINE|B2	27834.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	400.44	378.76	189.62	412.25	458.58	245.16	425.64	577.47	181.74
Merged-chr18-70476564-3	chr18	70476072	70477072	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	3906.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	23.45	22.58	12.95	18.89	13.53	17.68	28.52	25.2	10.62
Merged-chr17-10335505-1	chr17	10335005	10336005	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	10903.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	54.92	43.31	20.35	70.85	60.65	57.87	44.36	37.58	31.85
Merged-chr14-70361646-3	chr14	70361150	70362150	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-10226.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	6.86	5.53	3.7	4.72	5.6	3.22	4.22	6.19	3.75
Merged-chr9-120881352-2	chr9	120880851	120881851	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	33899.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	29.17	32.25	14.8	22.27	23.79	34.56	2.11	1.77	1.25
Merged-chr7-45538800-3	chr7	45538220	45539220	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 8 of 19)	intron (NM_148927, intron 8 of 19)	12390.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	53.2	21.2	14.8	47.9	24.72	31.35	38.02	24.32	14.36
Merged-chr2-101733451-1	chr2	101732951	101733951	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 7 of 8)	intron (NM_001355625, intron 7 of 8)	55031.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	60.64	41.47	42.55	37.78	22.86	40.99	48.58	34.49	15.61
Merged-chr14-8095555-3	chr14	8095057	8096057	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2654.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	89.81	110.13	52.72	93.11	83.04	106.9	130.97	194.11	86.81
Merged-chr11-78475455-3	chr11	78474965	78475965	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168521, intron 7 of 8)	ORR1F|LTR|ERVL-MaLR	9764.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	6.29	7.83	11.1	8.77	7.0	14.47	7.39	7.96	3.75
Merged-chr5-125189022-3	chr5	125188530	125189530	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-9816.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	29.75	17.51	10.17	26.99	14.0	9.65	14.79	12.38	5.62
Merged-chr1-84203782-1	chr1	84203282	84204282	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	15179.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	13.16	10.14	16.65	14.84	5.6	11.25	9.51	5.75	14.99
Merged-chr12-77057011-1	chr12	77056511	77057511	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94763.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	8.58	5.99	1.85	11.47	8.4	5.63	4.22	3.54	5.62
Merged-chr9-110887692-3	chr9	110887190	110888190	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7368.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	81.8	52.07	86.02	92.44	34.99	71.54	45.42	40.24	49.34
Merged-chr7-83632418-1	chr7	83631918	83632918	+	968.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023377, intron 1 of 5)	intron (NM_023377, intron 1 of 5)	401.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	83.52	102.75	80.47	93.11	107.3	139.06	113.01	143.26	84.31
Merged-chr4-150891482-3	chr4	150890980	150891980	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18441.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	6.86	5.07	9.25	8.77	3.27	6.43	5.28	0.88	6.25
Merged-chr7-110715781-2	chr7	110715277	110716277	+	968.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52429.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	8.01	3.23	1.85	12.14	10.26	4.02	2.11	2.65	6.25
Merged-chr11-102999455-1	chr11	102998955	102999955	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_105896)	TTS (NR_105896)	466.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	51.48	29.95	14.8	7.42	1.4	6.43	3.17	2.21	3.12
Merged-chr7-63930274-3	chr7	63929782	63930782	+	968.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	8633.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	46.34	58.06	44.4	47.9	30.32	65.11	55.98	70.75	64.95
Merged-chr17-31637350-3	chr17	31636841	31637841	+	967.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144855)	promoter-TSS (NM_144855)	-136.0	NM_178224	12411.0	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	10.87	4.61	1.85	11.47	2.33	0.0	4.22	3.98	5.0
Merged-chr16-17804715-3	chr16	17804135	17805135	+	967.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153790, intron 8 of 10)	intron (NM_153790, intron 8 of 10)	7353.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	6.86	3.69	11.1	7.42	2.33	3.22	9.51	2.65	1.87
Merged-chr8-53626366-3	chr8	53625863	53626863	+	967.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 1 of 9)	intron (NM_146208, intron 1 of 9)	12702.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	27.46	20.27	24.05	11.47	13.53	16.88	29.57	21.67	21.23
Merged-chr19-4260721-3	chr19	4260223	4261223	+	967.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001356620)	TTS (NM_001356620)	3155.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	38.9	41.01	87.87	49.93	22.39	43.4	59.15	55.27	38.1
Merged-chr3-115695787-3	chr3	115695283	115696283	+	967.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19272.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	31.46	53.45	16.65	90.41	102.17	151.11	38.02	45.1	28.1
Merged-chr6-72402055-3	chr6	72401554	72402554	+	967.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11387.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	4.58	3.69	1.85	6.75	2.8	3.22	2.11	3.1	5.0
Merged-chr2-166448903-3	chr2	166448388	166449388	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015558, intron 1 of 2)	intron (NR_015558, intron 1 of 2)	1437.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	236.83	240.99	129.49	494.57	381.14	284.54	390.79	418.73	177.37
Merged-chr4-88438105-3	chr4	88437606	88438606	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 1 of 6)	intron (NM_025760, intron 1 of 6)	820.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	45.19	49.76	35.15	86.36	52.25	60.28	120.41	126.02	52.46
Merged-chr12-85518399-3	chr12	85517888	85518888	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44498.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	22.31	12.44	12.95	22.94	20.53	36.17	15.84	10.61	23.73
Merged-chr18-9707613-3	chr18	9707120	9708120	+	967.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-28.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	39.47	32.72	22.2	107.28	150.68	67.52	20.07	12.38	6.25
Merged-chr11-113422716-4	chr11	113422160	113423160	+	967.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	143155.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	17.16	19.81	20.35	73.54	77.91	99.67	13.73	11.94	8.12
Merged-chr2-6085958-3	chr2	6085475	6086475	+	967.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44210.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	19.45	7.37	7.4	22.27	13.53	28.94	14.79	12.82	11.24
Merged-chr10-62945322-3	chr10	62944827	62945827	+	967.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175194, exon 9 of 9)	3' UTR (NM_175194, exon 9 of 9)	-1702.0	NR_152862	327762.0	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	19.45	13.82	23.12	18.89	13.06	24.92	25.35	14.15	15.61
Merged-chr10-121034011-3	chr10	121033541	121034541	+	967.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	37.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	6.29	0.0	3.7	4.72	1.87	1.61	6.34	3.98	4.37
Merged-chr13-10109872-3	chr13	10109383	10110383	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	250920.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	18.31	12.9	14.8	24.96	18.66	15.27	39.08	23.43	23.11
Merged-chr18-38297455-3	chr18	38296948	38297948	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164621, intron 1 of 9)	MIR|SINE|MIR	643.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	133.29	200.9	97.12	140.34	169.34	102.08	113.01	134.86	64.33
Merged-chr4-132809868-3	chr4	132809325	132810325	+	967.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13461.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	66.36	66.81	45.32	50.6	30.32	77.97	62.31	73.84	43.72
Merged-chr13-89739626-3	chr13	89739118	89740118	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	CpG	2894.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	19.45	4.61	1.85	17.54	10.26	8.04	32.74	15.92	24.98
Merged-chr8-46888739-3	chr8	46888208	46889208	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98179.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	88.1	119.8	102.67	109.3	79.77	94.04	95.06	156.97	78.07
Merged-chrX-159627397-5	chrX	159626911	159627911	+	967.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001135727, exon 1 of 18)	5' UTR (NM_001135727, exon 1 of 18)	139.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	21.74	26.26	45.32	39.13	29.86	42.6	39.08	37.14	16.86
Merged-chr5-149185021-3	chr5	149184497	149185497	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115151, intron 1 of 8)	CpG	437.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	82.38	57.6	56.42	69.5	41.52	76.36	82.38	85.34	49.96
Merged-chr13-73803535-3	chr13	73803025	73804025	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	39828.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	117.27	112.43	148.92	133.59	126.89	161.56	116.18	160.06	70.57
Merged-chr14-55142070-3	chr14	55141573	55142573	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25138.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	17.16	14.75	7.4	21.59	12.6	12.06	16.9	16.36	9.99
Merged-chr2-75938488-3	chr2	75937989	75938989	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028235)	promoter-TSS (NM_028235)	-27.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	98.39	114.74	43.47	99.18	99.83	62.7	71.82	72.07	39.97
Merged-chr6-31809982-3	chr6	31809479	31810479	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143848.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	6.86	16.13	26.82	30.36	17.26	56.27	74.99	10.61	14.99
Merged-chr8-126696610-3	chr8	126696096	126697096	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103160.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	18.88	8.29	14.8	11.47	7.0	12.86	16.9	11.05	8.74
Merged-chr10-70297000-3	chr10	70296531	70297531	+	967.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51755.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	3.43	3.23	1.85	4.05	5.6	3.22	8.45	0.0	1.25
Merged-chr6-88030606-3	chr6	88030112	88031112	+	967.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-10817.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	25.17	39.17	27.75	16.87	21.93	38.58	14.79	23.88	33.1
Merged-chr5-137672105-3	chr5	137671607	137672607	+	967.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303271, intron 1 of 12)	intron (NM_001303271, intron 1 of 12)	12646.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	34.9	41.93	29.6	54.65	39.19	54.66	46.47	50.41	21.23
Merged-chr4-99478751-3	chr4	99478244	99479244	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177555.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	32.04	46.08	26.82	75.57	63.45	40.99	103.51	84.45	33.1
Merged-chr10-125735922-3	chr10	125735414	125736414	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-230305.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	9.15	4.61	7.4	6.75	8.86	10.45	8.45	8.4	9.99
Merged-chr11-20193275-3	chr11	20192779	20193779	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8133.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	16.02	23.04	5.55	24.96	26.12	36.17	23.24	22.55	12.49
Merged-chr17-81704914-3	chr17	81704408	81705408	+	967.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33479.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	54.35	62.21	44.4	74.89	55.51	80.38	58.09	83.57	59.33
Merged-chr1-181014912-3	chr1	181014429	181015429	+	967.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	2640.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	118.99	102.29	85.1	118.75	71.38	109.32	127.8	174.21	64.33
Merged-chr11-70653692-6	chr11	70653211	70654211	+	967.695801	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011072, intron 1 of 2)	intron (NM_011072, intron 1 of 2)	939.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	129.86	89.85	127.64	83.66	56.91	145.49	97.17	92.86	89.31
Merged-chr2-90589587-3	chr2	90589068	90590068	+	967.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-8921.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	31.46	15.67	17.57	26.31	11.2	11.25	9.51	11.5	2.5
Merged-chr4-119992005-1	chr4	119991505	119992505	+	967.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	-169201.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	3.43	1.84	7.4	13.49	4.2	2.41	2.11	1.33	7.49
Merged-chr17-40873675-3	chr17	40873174	40874174	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6884.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	28.03	29.95	27.75	5.4	7.46	12.06	21.12	24.76	26.23
Merged-chr4-106910344-3	chr4	106909828	106910828	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1142.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	25.74	30.87	28.67	27.66	15.39	39.39	38.02	34.49	36.85
Merged-chr10-43504543-3	chr10	43504042	43505042	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359600, intron 3 of 3)	intron (NM_001359600, intron 3 of 3)	11377.0	NM_001359600	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	12.59	6.91	13.87	16.19	7.0	15.27	9.51	3.54	8.74
Merged-chr11-115185114-1	chr11	115184614	115185614	+	967.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025400, exon 3 of 7)	exon (NM_025400, exon 3 of 7)	2202.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	9.15	7.37	18.5	6.07	5.13	8.04	28.52	14.15	16.86
Merged-chr15-59430531-1	chr15	59430031	59431031	+	967.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	56333.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	9.72	9.22	5.55	27.66	41.52	16.88	16.9	3.98	3.12
Merged-chr12-3236877-3	chr12	3236370	3237370	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	1079.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	86.38	74.65	57.35	91.76	51.78	53.85	152.09	123.81	70.57
Merged-chr6-15720882-6	chr6	15720393	15721393	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175088, exon 1 of 5)	5' UTR (NM_175088, exon 1 of 5)	232.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	165.9	158.05	112.84	149.79	151.15	122.98	134.14	117.62	63.7
Merged-chr6-122939793-3	chr6	122939280	122940280	+	967.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12735.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	76.66	94.46	78.62	91.09	77.44	65.91	68.65	53.5	58.08
Merged-chr4-133847906-1	chr4	133847406	133848406	+	967.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285506, exon 21 of 21)	3' UTR (NM_001285506, exon 21 of 21)	26825.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.29	3.23	0.0	5.4	0.47	7.23	119.35	96.39	53.71
Merged-chr12-17455368-2	chr12	17454867	17455867	+	967.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-89506.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	7.44	6.91	1.85	4.05	4.2	8.04	4.22	2.21	3.12
Merged-chr5-129940950-3	chr5	129940446	129941446	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-1163.0	NM_001001327	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	123.56	151.14	88.8	145.06	136.22	94.85	147.87	133.53	72.45
Merged-chr17-65699010-3	chr17	65698560	65699560	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	-56856.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	42.33	27.19	23.12	42.51	41.05	38.58	31.69	29.63	13.12
Merged-chr12-40553792-3	chr12	40553297	40554297	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	107744.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	59.49	56.68	48.1	46.56	35.92	47.42	60.2	60.13	48.71
Merged-chr16-92870384-3	chr16	92869893	92870893	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44319.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	17.16	18.89	18.5	27.66	11.66	18.49	13.73	16.8	26.23
Merged-chr11-120629569-3	chr11	120629061	120630061	+	967.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010756, exon 3 of 3)	exon (NM_010756, exon 3 of 3)	3986.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	195.07	162.66	107.29	170.03	128.76	135.04	157.37	217.55	108.67
Merged-chr5-5809468-2	chr5	5808978	5809978	+	967.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60161.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	3.43	4.15	2.77	3.37	3.27	7.23	3.17	0.0	5.62
Merged-chr16-65458431-3	chr16	65457918	65458918	+	967.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62211.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	9.15	8.75	8.32	7.42	9.8	8.84	4.22	5.31	8.74
Merged-chr16-94240358-3	chr16	94239843	94240843	+	967.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	L1MB4|LINE|L1	49948.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	75.51	72.34	54.57	91.76	60.65	45.82	74.99	74.28	46.84
Merged-chr10-44598912-3	chr10	44598427	44599427	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	149.31	195.83	146.14	190.95	130.62	168.8	199.62	245.84	128.03
Merged-chr16-36817519-3	chr16	36817015	36818015	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	-8810.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	12.59	5.53	7.4	6.07	3.27	6.43	6.34	3.98	6.25
Merged-chr7-14534131-2	chr7	14533643	14534643	+	967.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28028.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	9.72	8.29	1.85	26.99	23.33	24.92	36.97	16.36	13.12
Merged-chr8-3493174-3	chr8	3492702	3493702	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080461)	promoter-TSS (NM_080461)	64.0	NM_080461	140482.0	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	25.74	17.97	32.37	29.69	32.66	40.99	44.36	17.24	20.61
Merged-chr15-86170386-2	chr15	86169880	86170880	+	967.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-15348.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	234.54	208.27	196.09	292.15	264.98	271.68	283.06	282.1	148.01
Merged-chr8-111062645-3	chr8	111062143	111063143	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6304.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	8.58	5.53	6.47	9.45	0.93	7.23	2.11	5.31	6.25
Merged-chr4-120405541-3	chr4	120405050	120406050	+	967.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013883, intron 1 of 16)	CpG	269.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	119.56	106.9	133.19	112.0	73.71	99.67	140.47	103.91	71.2
Merged-chr11-76590011-3	chr11	76589502	76590502	+	967.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12263.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	122.99	112.89	78.62	128.2	121.29	126.19	147.87	135.3	85.56
Merged-chr6-126702175-3	chr6	126701667	126702667	+	967.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38507.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	11.44	13.82	5.55	14.84	5.6	6.43	5.28	7.07	7.49
Merged-chr7-98334136-3	chr7	98333637	98334637	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-12929.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	51.48	46.08	40.7	53.98	29.39	40.99	16.9	22.99	34.35
Merged-chr19-45074575-4	chr19	45074076	45075076	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362398)	promoter-TSS (NM_001362398)	-665.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	156.74	188.0	147.99	105.93	119.43	114.14	151.03	149.45	117.41
Merged-chr5-66102971-3	chr5	66102466	66103466	+	967.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	B4|SINE|B4	-4787.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	36.04	40.55	33.3	28.34	27.06	38.58	25.35	34.05	26.23
Merged-chr8-66346127-2	chr8	66345639	66346639	+	967.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	Lx5|LINE|L1	-40162.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	1.72	4.61	8.32	6.75	3.73	3.22	7.39	8.84	8.12
Merged-chr5-3491373-3	chr5	3490846	3491846	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-52487.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	80.66	80.18	62.9	140.34	118.96	141.47	94.0	88.88	88.68
Merged-chr6-35236569-3	chr6	35236070	35237070	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027513, intron 34 of 42)	intron (NM_027513, intron 34 of 42)	-16129.0	NR_015608	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	23.45	28.11	24.05	29.01	33.12	45.01	24.29	35.37	13.12
Merged-chr11-106815592-3	chr11	106815082	106816082	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177088, exon 15 of 20)	exon (NM_177088, exon 15 of 20)	26330.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	21.74	14.75	23.12	20.92	8.4	14.47	15.84	15.92	19.98
Merged-chr10-53876111-3	chr10	53875599	53876599	+	967.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125190.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	12.01	7.37	3.7	10.8	8.4	35.37	7.39	7.07	20.61
Merged-chr2-174329169-4	chr2	174328687	174329687	+	967.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077510)	promoter-TSS (NM_001077510)	-883.0	NM_201616	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	58.92	42.85	28.67	49.25	26.12	50.64	60.2	44.66	43.72
Merged-chr1-45861790-3	chr1	45861295	45862295	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63799.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	82.38	130.86	74.0	98.51	76.97	101.28	88.72	94.18	54.33
Merged-chr17-79615306-3	chr17	79614811	79615811	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 1 of 10)	CpG	411.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	55.49	29.95	37.0	52.63	62.51	71.54	58.09	46.87	39.97
Merged-chr2-94405045-3	chr2	94404550	94405550	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	1639.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	43.48	27.19	12.02	56.68	32.19	14.47	44.36	43.77	21.23
Merged-chr6-108443511-3	chr6	108443001	108444001	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-46242.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	77.23	59.44	24.05	107.28	77.44	61.09	89.78	72.52	33.72
Merged-chr16-58408924-1	chr16	58408424	58409424	+	967.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028523, exon 1 of 16)	exon (NM_028523, exon 1 of 16)	389.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	5.72	5.07	1.85	19.57	11.2	4.82	4.22	2.21	3.75
Merged-chr2-166018954-3	chr2	166018431	166019431	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	26294.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	51.48	48.38	49.02	43.18	35.45	36.97	51.75	32.72	29.98
Merged-chr2-57123737-3	chr2	57123229	57124229	+	967.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	274.0	NM_001139509	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	64.64	30.41	16.65	93.79	55.05	77.16	90.83	44.66	36.22
Merged-chr17-48270026-3	chr17	48269529	48270529	+	967.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	5734.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	41.19	31.33	37.0	37.11	18.19	55.46	42.25	27.86	29.35
Merged-chr19-36006469-3	chr19	36005979	36006979	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360298, intron 1 of 2)	MER54A|LTR|ERVL	50881.0	NM_001360318	15566.0	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT-X|5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	7.44	3.69	3.7	4.72	3.27	1.61	1.06	2.65	0.0
Merged-chr17-35125293-3	chr17	35124796	35125796	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001128597)	TTS (NM_001128597)	-1106.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	57.21	42.85	28.67	34.41	32.66	37.78	52.81	60.58	29.98
Merged-chr2-125731926-3	chr2	125731437	125732437	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7789.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	5.72	1.38	1.85	2.7	4.2	4.82	4.22	2.21	5.0
Merged-chr7-6171604-3	chr7	6171112	6172112	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146024)	promoter-TSS (NM_001146024)	-901.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	173.9	211.5	110.07	172.05	164.68	86.01	201.73	238.77	101.8
Merged-chr19-41374755-3	chr19	41374251	41375251	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	10319.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	36.61	37.78	39.77	22.27	34.52	30.54	28.52	27.86	32.48
Merged-chr16-14112376-3	chr16	14111859	14112859	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 26 of 26)	intron (NM_001081154, intron 26 of 26)	46915.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	54.92	73.73	61.97	80.29	62.05	86.81	67.6	78.26	49.34
Merged-chr19-40630262-3	chr19	40629729	40630729	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1M4a1|LINE|L1	17863.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	203.08	242.83	113.77	220.63	222.99	192.11	177.44	215.78	104.3
Merged-chr12-79171744-3	chr12	79171257	79172257	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	701.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	97.25	77.41	72.15	156.53	140.42	123.78	81.33	80.03	56.83
Merged-chr12-55466440-3	chr12	55465955	55466955	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26192.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	24.03	14.75	9.25	23.62	28.92	29.74	22.18	15.03	9.37
Merged-chr10-44679740-3	chr10	44679241	44680241	+	967.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-220993.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	17.16	12.9	14.8	16.87	10.26	8.04	14.79	10.17	9.99
Merged-chr2-93475209-3	chr2	93474714	93475714	+	967.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12264.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.0	1.84	0.92	2.7	0.93	1.61	2.11	0.88	1.25
Merged-chr11-95828305-3	chr11	95827779	95828779	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	MIRb|SINE|MIR	3779.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	69.79	55.29	65.67	73.54	74.17	60.28	77.1	94.18	59.95
Merged-chr1-171823370-3	chr1	171822872	171823872	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16325.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	80.66	94.46	57.35	72.87	52.72	71.54	54.92	58.81	58.71
Merged-chr12-36208669-2	chr12	36208178	36209178	+	967.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027699, exon 5 of 5)	exon (NM_027699, exon 5 of 5)	9540.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	20.59	14.75	10.17	15.52	20.06	12.86	5.28	5.75	6.25
Merged-chr4-148655163-3	chr4	148654676	148655676	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	11859.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	14.3	17.05	25.9	6.07	6.53	14.47	33.8	21.22	25.61
Merged-chr9-118619145-3	chr9	118618677	118619677	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	12468.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	87.52	68.66	68.45	109.3	93.3	127.8	76.05	71.63	38.72
Merged-chr3-8968831-3	chr3	8968312	8969312	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-4666.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	32.61	31.33	45.32	51.95	42.92	21.7	64.43	73.84	44.97
Merged-chr4-126255646-3	chr4	126255139	126256139	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	680.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	223.1	162.66	155.39	172.05	90.97	166.38	161.6	178.64	143.02
Merged-chr15-84557782-3	chr15	84557276	84558276	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177630)	promoter-TSS (NM_177630)	47.0	NM_177630	223732.0	Mm.6471	NM_177630	ENSMUSG00000055745	Rtl6	BC058638|Ldoc1l|Mar6|Mart6	retrotransposon Gag like 6	protein-coding	14.3	14.28	9.25	19.57	11.66	11.25	26.4	13.71	10.62
Merged-chr10-79883431-3	chr10	79882918	79883918	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011178)	TTS (NM_011178)	-2894.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	65.79	24.42	37.92	64.1	40.12	53.05	62.31	53.94	47.46
Merged-chr4-99829209-3	chr4	99828744	99829744	+	967.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145549)	promoter-TSS (NM_145549)	-126.0	NM_026348	67733.0	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	13.73	13.36	22.2	11.47	10.26	9.65	21.12	22.11	17.49
Merged-chr6-146170820-5	chr6	146170298	146171298	+	967.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 51 of 56)	ORR1E|LTR|ERVL-MaLR	236676.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	28.03	28.57	28.67	61.4	76.51	64.3	74.99	50.85	39.97
Merged-chr9-15493456-3	chr9	15492950	15493950	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359604)	promoter-TSS (NM_001359604)	18.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	5.15	1.38	3.7	7.42	1.4	4.82	3.17	1.77	0.62
Merged-chr8-25275257-3	chr8	25274760	25275760	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31010.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	4.58	5.07	3.7	9.45	1.87	4.82	9.51	4.86	7.49
Merged-chr5-23975203-3	chr5	23974726	23975726	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	55086.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	18.88	25.8	15.72	44.53	31.72	35.37	33.8	26.53	23.73
Merged-chr17-26466904-3	chr17	26466397	26467397	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41575.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.3	20.74	13.87	46.56	42.92	37.78	20.07	24.32	14.36
Merged-chr10-84340322-3	chr10	84339813	84340813	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100158.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	75.51	41.47	30.52	69.5	31.72	50.64	55.98	40.68	18.74
Merged-chr18-69085149-1	chr18	69084649	69085649	+	967.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62876.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	12.01	4.61	5.55	20.92	14.46	8.04	6.34	2.65	0.0
Merged-chr1-136578437-3	chr1	136577947	136578947	+	967.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46454.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	43.48	41.93	33.3	40.48	30.79	16.08	71.82	65.0	52.46
Merged-chr10-17669624-3	chr10	17669112	17670112	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53616.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	11.44	3.69	0.0	22.94	8.86	11.25	8.45	8.4	12.49
Merged-chr13-35647637-3	chr13	35647145	35648145	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12217.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	12.01	7.83	17.57	7.42	10.73	11.25	5.28	2.65	1.25
Merged-chr3-8736182-3	chr3	8735693	8736693	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	40.04	37.78	28.67	48.58	32.19	30.54	34.85	34.49	15.61
Merged-chr3-19954148-3	chr3	19953660	19954660	+	967.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2894.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	17.73	17.51	11.1	13.49	6.06	11.25	22.18	9.29	11.24
Merged-chr9-111554795-3	chr9	111554294	111555294	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	115713.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	13.73	5.07	10.17	10.12	5.13	12.86	15.84	18.57	8.74
Merged-chrX-102644691-3	chrX	102644196	102645196	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008832)	promoter-TSS (NM_008832)	-450.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	80.66	64.51	50.87	54.65	48.98	48.23	59.15	65.0	43.09
Merged-chr8-120792911-3	chr8	120792448	120793448	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54309.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	17.73	19.35	5.55	23.62	12.6	22.51	27.46	15.92	10.62
Merged-chr11-72752215-3	chr11	72751716	72752716	+	967.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009671, exon 15 of 25)	exon (NM_009671, exon 15 of 25)	43623.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	17.16	17.05	20.35	22.27	14.0	12.06	24.29	23.43	13.74
Merged-chr2-166294358-3	chr2	166293871	166294871	+	967.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	20463.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	33.18	15.21	14.8	38.46	15.39	21.7	20.07	8.84	8.74
Merged-chr17-35201244-3	chr17	35200743	35201743	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013693, intron 1 of 3)	intron (NM_013693, intron 1 of 3)	764.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	223.67	135.47	133.19	212.54	103.56	145.49	140.47	137.96	106.17
Merged-chr6-33256893-1	chr6	33256393	33257393	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347089, intron 1 of 9)	intron (NM_001347089, intron 1 of 9)	7765.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	13.73	11.98	5.55	10.8	12.13	9.65	12.67	13.27	22.48
Merged-chr7-19578190-3	chr7	19577700	19578700	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	913.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	6.86	7.37	5.55	4.72	2.8	6.43	5.28	1.77	2.5
Merged-chr1-131979250-1	chr1	131978750	131979750	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	8641.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	35.47	45.16	35.15	34.41	39.65	53.05	36.97	38.03	29.35
Merged-chr7-49396630-1	chr7	49396130	49397130	+	967.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 3 of 37)	B2_Mm2|SINE|B2	150441.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	30.32	17.05	1.85	54.65	26.59	36.17	14.79	7.96	9.37
Merged-chr4-133887444-1	chr4	133886944	133887944	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 1 of 21)	intron (NM_009097, intron 1 of 21)	353.0	NM_001285505	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	124.14	71.88	70.3	114.03	78.84	98.06	44.36	20.78	16.24
Merged-chr13-12302443-3	chr13	12301959	12302959	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033268, intron 6 of 20)	intron (NM_033268, intron 6 of 20)	38273.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	1.72	1.84	5.55	6.07	4.2	8.04	4.22	3.54	3.75
Merged-chr5-41449656-3	chr5	41449172	41450172	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	258019.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	9.72	8.75	5.55	2.02	2.8	1.61	10.56	11.5	8.74
Merged-chr4-56222655-3	chr4	56222170	56223170	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	518755.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	57.78	66.81	37.92	45.88	48.98	40.19	73.93	72.52	38.72
Merged-chr2-94389186-3	chr2	94388680	94389680	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183106, intron 1 of 24)	intron (NM_183106, intron 1 of 24)	17509.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	6.86	3.69	5.55	4.72	2.33	11.25	5.28	4.86	3.12
Merged-chr4-62583384-3	chr4	62582828	62583828	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	23481.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	8.58	9.22	0.0	9.45	7.93	1.61	9.51	3.98	5.0
Merged-chr1-13336513-1	chr1	13336013	13337013	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	35916.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	23.45	20.74	16.65	24.96	10.26	14.47	14.79	15.92	13.74
Merged-chr4-139579176-3	chr4	139578678	139579678	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4458.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	104.11	60.36	38.85	12.14	5.13	6.43	54.92	48.2	23.11
Merged-chr14-103513240-3	chr14	103512729	103513729	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022886)	promoter-TSS (NM_022886)	-112.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	15.45	4.15	1.85	16.87	7.46	6.43	6.34	11.05	5.0
Merged-chr7-102514129-1	chr7	102513629	102514629	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19356.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	5.15	3.23	5.55	6.07	1.4	4.82	4.22	1.77	5.0
Merged-chr6-29198779-3	chr6	29198292	29199292	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13505.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	6.86	4.15	3.7	2.02	1.4	0.0	2.11	0.44	0.0
Merged-chr10-10553103-3	chr10	10552621	10553621	+	967.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	5086.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	44.05	41.01	27.75	39.81	32.19	32.96	49.64	63.67	35.6
Merged-chr8-37791780-1	chr8	37791280	37792280	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	Lx6|LINE|L1	460422.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	3.43	2.3	0.92	4.72	4.67	3.22	0.0	1.77	2.5
Merged-chr5-99516401-1	chr5	99515901	99516901	+	967.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	MTD|LTR|ERVL-MaLR	212659.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	5.15	7.37	0.0	11.47	3.27	12.06	4.22	3.54	2.5
Merged-chr9-14752154-4	chr9	14751666	14752666	+	966.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010242)	promoter-TSS (NM_010242)	-44.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	32.04	21.2	30.52	35.76	28.46	36.17	38.02	29.18	10.62
Merged-chr7-44378509-3	chr7	44378004	44379004	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3474.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	12.01	13.36	12.95	13.49	10.26	16.08	12.67	6.19	6.87
Merged-chr16-91743195-3	chr16	91742682	91743682	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	13811.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	22.88	17.97	10.17	31.71	18.66	32.15	24.29	16.36	6.25
Merged-chr10-128565388-3	chr10	128564922	128565922	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011119, intron 1 of 11)	CpG	512.0	NM_011119	18813.0	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	94.96	67.27	66.6	110.65	89.57	81.99	71.82	92.86	48.71
Merged-chr2-24306825-3	chr2	24306323	24307323	+	966.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15627.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	24.03	16.59	5.55	31.71	19.13	19.29	17.96	12.38	11.24
Merged-chr4-86396870-2	chr4	86396378	86397378	+	966.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	161425.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	1.14	2.3	5.55	4.05	6.53	9.65	1.06	2.65	8.74
Merged-chr2-152881075-3	chr2	152880572	152881572	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001141976, exon 9 of 18)	exon (NM_001141976, exon 9 of 18)	16005.0	NR_049195	100885834.0		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	25.17	11.98	7.4	29.01	7.0	9.65	13.73	12.38	5.0
Merged-chr15-57761438-3	chr15	57760935	57761935	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	66768.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	22.88	41.47	12.02	16.87	14.46	6.43	27.46	38.47	24.98
Merged-chr6-112728870-3	chr6	112728376	112729376	+	966.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 20 of 21)	intron (NM_080448, intron 20 of 21)	-32206.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	20.59	20.27	32.37	33.74	15.39	16.08	23.24	12.38	11.24
Merged-chr3-148918010-3	chr3	148917508	148918508	+	966.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	36627.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	52.63	40.55	26.82	60.72	55.05	34.56	43.3	32.72	24.98
Merged-chr9-113725787-3	chr9	113725282	113726282	+	966.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15691.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	13.16	7.37	11.1	20.24	4.2	17.68	6.34	6.19	10.62
Merged-chr14-62760122-5	chr14	62759578	62760578	+	966.847595	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045503)	promoter-TSS (NR_045503)	-423.0	NR_045503	71000.0	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	192.78	149.29	177.59	151.14	81.17	140.66	183.78	115.41	118.66
Merged-chr11-3179064-2	chr11	3178533	3179533	+	966.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	14430.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	42.33	59.44	76.77	55.33	68.11	70.73	2.11	2.21	83.69
Merged-chr10-24641606-2	chr10	24641113	24642113	+	966.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	46171.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	125.28	141.46	113.77	135.62	121.76	145.49	154.2	189.69	70.57
Merged-chr2-60124836-3	chr2	60124341	60125341	+	966.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	899.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	246.56	239.15	176.67	240.2	214.59	194.52	256.65	215.34	112.42
Merged-chr15-83128199-3	chr15	83127711	83128711	+	966.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-5410.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	49.77	36.86	46.25	65.45	40.12	32.96	49.64	54.39	23.11
Merged-chr7-127713242-3	chr7	127712719	127713719	+	966.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301283, intron 1 of 2)	intron (NM_001301283, intron 1 of 2)	282.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	19.45	12.44	7.4	26.31	15.86	16.08	20.07	15.92	8.74
Merged-chr17-13544196-3	chr17	13543686	13544686	+	966.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045436, intron 2 of 4)	RLTR11B|LTR|ERVK	9908.0	NR_045436	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	8.01	9.22	12.95	10.12	6.53	16.08	15.84	15.92	13.74
Merged-chr7-98711711-3	chr7	98711226	98712226	+	966.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8479.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	68.65	53.45	47.17	134.94	101.23	51.44	66.54	82.69	39.97
Merged-chr10-119040005-3	chr10	119039488	119040488	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10511.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	97.82	93.54	50.87	120.77	114.76	96.45	121.46	132.21	79.32
Merged-chr10-21636866-3	chr10	21636372	21637372	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43727.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	18.31	14.75	19.42	35.09	36.39	16.08	32.74	35.37	18.74
Merged-chr17-29079035-3	chr17	29078513	29079513	+	966.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_036469, exon 1 of 2)	non-coding (NR_036469, exon 1 of 2)	113.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	15.45	16.59	12.95	10.8	7.46	18.49	19.01	14.15	5.0
Merged-chr5-90882364-3	chr5	90881863	90882863	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8882.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	145.87	68.2	47.17	183.52	106.36	67.52	41.19	16.8	19.98
Merged-chr7-80115054-6	chr7	80114518	80115518	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	CpG	332.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	91.53	78.33	91.57	73.54	63.45	106.1	85.55	63.23	62.45
Merged-chr1-179847937-3	chr1	179847439	179848439	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43924.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	4.0	5.07	3.7	7.42	4.67	6.43	7.39	2.65	2.5
Merged-chr15-95887572-3	chr15	95887068	95888068	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-57496.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	23.45	16.13	12.02	20.24	18.19	15.27	28.52	16.36	12.49
Merged-chr5-142932511-3	chr5	142932040	142933040	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25786.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	30.32	35.48	64.75	39.13	26.12	38.58	49.64	49.52	51.84
Merged-chr9-44582634-3	chr9	44582125	44583125	+	966.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22267.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	25.74	21.66	8.32	27.66	14.93	21.7	41.19	32.72	28.73
Merged-chr2-59465897-3	chr2	59465424	59466424	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18729.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.15	3.69	0.0	6.75	4.67	8.04	4.22	1.33	1.87
Merged-chr12-55487503-7	chr12	55487032	55488032	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5115.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	124.14	138.7	111.92	145.06	98.43	102.88	107.73	109.22	90.56
Merged-chr10-85002230-1	chr10	85001730	85002730	+	966.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	84617.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	15.45	15.21	6.47	11.47	15.39	16.08	12.67	11.05	2.5
Merged-chr7-88231337-3	chr7	88230848	88231848	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46737.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	130.43	134.09	72.15	155.19	136.69	56.27	143.64	177.75	68.7
Merged-chr8-84070374-3	chr8	84069869	84070869	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3533.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	62.93	62.67	70.3	42.51	44.32	60.28	38.02	30.95	29.98
Merged-chr15-44617103-3	chr15	44616593	44617593	+	966.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2134.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	7.44	8.75	3.7	3.37	9.33	12.06	4.22	11.5	8.12
Merged-chr11-75150861-2	chr11	75150355	75151355	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	B4A|SINE|B4	17297.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	28.03	25.34	10.17	24.96	26.12	26.53	21.12	25.2	19.98
Merged-chr11-113430311-2	chr11	113429818	113430818	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	MLT1C|LTR|ERVL-MaLR	135497.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	6.86	5.99	0.0	18.22	21.93	28.94	1.06	2.65	1.25
Merged-chrX-60021818-2	chrX	60021315	60022315	+	966.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	intron (NM_001305797, intron 5 of 6)	22351.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	5.15	4.15	1.85	4.05	4.67	5.63	5.28	3.54	5.0
Merged-chr9-30480646-3	chr9	30480143	30481143	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53314.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	1.72	3.23	7.4	2.02	2.33	4.82	1.06	1.33	6.25
Merged-chr9-66069803-3	chr9	66069307	66070307	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025612)	promoter-TSS (NM_001025612)	-76.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	2.29	3.23	4.62	8.77	6.53	2.41	1.06	2.21	3.75
Merged-chr6-97856391-3	chr6	97855887	97856887	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	49329.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	148.16	169.11	107.29	213.89	136.69	179.24	163.71	173.33	96.18
Merged-chr10-41303845-3	chr10	41303341	41304341	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133999)	promoter-TSS (NM_133999)	-600.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	83.52	147.91	84.17	72.19	97.97	93.24	113.01	162.72	49.96
Merged-chr13-67780157-3	chr13	67779648	67780648	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028402, intron 1 of 3)	intron (NM_028402, intron 1 of 3)	455.0	NM_028402	72958.0	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	49.2	51.61	39.77	75.57	60.65	47.42	151.03	185.71	56.83
Merged-chr15-98683949-3	chr15	98683438	98684438	+	966.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6477.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	36.04	30.87	36.07	27.66	25.66	32.15	62.31	28.3	21.86
Merged-chr2-30359257-3	chr2	30358767	30359767	+	966.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289710)	promoter-TSS (NM_001289710)	49.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	22.31	15.21	17.57	18.22	19.59	25.72	19.01	11.94	8.12
Merged-chr11-69123633-3	chr11	69123159	69124159	+	966.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033041)	TTS (NM_033041)	-2718.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	112.12	103.68	121.17	95.81	58.78	67.52	92.94	101.26	66.2
Merged-chr8-86745624-3	chr8	86745117	86746117	+	966.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027829)	promoter-TSS (NR_027829)	-82.0	NR_027829	666945.0	Mm.391806	NR_027829		Gm10638	-	predicted gene 10638	ncRNA	91.53	40.09	61.97	104.58	30.32	73.95	110.9	19.46	39.97
Merged-chr1-157101298-3	chr1	157100798	157101798	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305061, intron 5 of 8)	intron (NM_001305061, intron 5 of 8)	7352.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	11.44	11.06	7.4	8.1	2.8	3.22	15.84	12.38	12.49
Merged-chr6-136716282-3	chr6	136715791	136716791	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-54398.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.29	4.15	3.7	10.12	2.8	5.63	19.01	12.38	12.49
Merged-chr16-55555363-3	chr16	55554861	55555861	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60630.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	10.87	16.59	0.0	11.47	14.0	12.86	16.9	17.24	14.99
Merged-chr11-87421994-3	chr11	87421497	87422497	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	RMER15|LTR|ERVL	-5594.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	116.13	116.12	51.8	84.34	91.9	73.95	127.8	138.4	42.47
Merged-chr8-111338705-3	chr8	111338207	111339207	+	966.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029005)	promoter-TSS (NM_029005)	-502.0	NM_029005	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	68.65	53.91	46.25	38.46	39.19	65.91	80.27	86.22	64.95
Merged-chr11-19493438-5	chr11	19492926	19493926	+	966.5533449999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	428151.0	NR_046037	74059.0	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	24.6	22.58	17.57	29.01	13.53	14.47	25.35	15.48	26.85
Merged-chr8-111538361-3	chr8	111537867	111538867	+	966.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168623)	promoter-TSS (NM_001168623)	24.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	10.3	6.45	9.25	13.49	10.26	8.04	5.28	5.31	6.25
Merged-chr11-121748122-3	chr11	121747603	121748603	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45676.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	105.83	125.33	104.52	155.86	97.5	139.86	160.54	153.87	116.79
Merged-chr2-170155653-3	chr2	170155138	170156138	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12963.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	80.09	88.93	97.12	78.27	55.98	81.99	92.94	112.75	98.05
Merged-chr5-106574691-3	chr5	106574153	106575153	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-116487.0	NM_001005477	104382.0	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	7.44	2.3	6.47	8.1	1.4	3.22	4.22	4.86	3.75
Merged-chr5-146772169-3	chr5	146771676	146772676	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	22780.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	31.46	35.94	12.95	34.41	29.86	22.51	55.98	54.39	36.22
Merged-chr16-24879319-3	chr16	24878832	24879832	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	157477.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	50.91	25.8	18.5	96.48	76.51	47.42	53.87	59.69	26.23
Merged-chr1-92034482-2	chr1	92033990	92034990	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	145851.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	5.15	10.6	11.1	0.67	1.4	1.61	6.34	0.88	6.87
Merged-chr5-135466078-3	chr5	135465582	135466582	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-71536.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	89.81	99.53	119.32	82.99	86.3	95.65	86.61	54.39	63.7
Merged-chr1-120019655-3	chr1	120019133	120020133	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 1 of 13)	intron (NM_001012322, intron 1 of 13)	12653.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	34.32	41.47	35.15	29.69	24.72	23.31	35.91	39.35	20.61
Merged-chr8-120768780-3	chr8	120768301	120769301	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30162.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	14.87	7.83	5.55	9.45	6.06	6.43	11.62	7.52	10.62
Merged-chr11-22972807-4	chr11	22972177	22973177	+	966.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361661, exon 1 of 3)	5' UTR (NM_001361661, exon 1 of 3)	189.0	NM_001361661	17846.0	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	227.68	322.09	161.87	186.22	258.45	165.58	154.2	203.84	135.52
Merged-chr5-19901870-3	chr5	19901370	19902370	+	966.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	MIRb|SINE|MIR	-5648.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.29	11.52	8.32	5.4	7.93	9.65	4.22	6.19	12.49
Merged-chr14-120762366-3	chr14	120761833	120762833	+	966.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148861.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	60.07	57.14	59.2	126.85	142.29	111.73	79.21	92.41	26.23
Merged-chrX-101268257-3	chrX	101267755	101268755	+	966.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013563)	promoter-TSS (NM_013563)	0.0	NM_001308535	16186.0	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	60.64	49.3	38.85	41.83	27.99	24.92	49.64	71.19	24.36
Merged-chr4-135307088-3	chr4	135306598	135307598	+	966.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34338.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	46.34	35.94	26.82	34.41	19.59	37.78	29.57	31.39	32.48
Merged-chr12-108642290-3	chr12	108641797	108642797	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	6544.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	78.94	96.3	34.22	103.91	69.51	79.58	122.52	98.6	80.56
Merged-chr16-20373007-3	chr16	20372497	20373497	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 16 of 29)	intron (NM_013790, intron 16 of 29)	-47593.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	52.06	47.0	41.62	79.62	63.45	48.23	52.81	56.6	17.49
Merged-chr4-95416869-3	chr4	95416360	95417360	+	966.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140647.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	13.16	17.05	10.17	18.22	21.46	23.31	24.29	23.43	9.99
Merged-chr7-66304130-3	chr7	66303632	66304632	+	966.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 10 of 33)	intron (NM_146191, intron 10 of 33)	77592.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	11.44	9.22	12.95	10.12	13.06	17.68	9.51	10.17	11.87
Merged-chr15-67039650-3	chr15	67039167	67040167	+	966.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70026.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	39.47	35.48	23.12	68.82	100.77	52.25	49.64	26.97	11.87
Merged-chr12-114210523-2	chr12	114210024	114211024	+	966.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	258942.0	NR_106062	102465663.0		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	5.15	8.75	5.55	10.12	9.33	4.82	1.06	2.65	3.12
Merged-chr8-94703590-3	chr8	94703084	94704084	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7342.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	13.73	22.12	24.97	14.17	17.26	14.47	10.56	15.03	19.36
Merged-chr7-129995708-3	chr7	129995201	129996201	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	33536.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	12.59	14.28	17.57	16.19	10.73	24.11	15.84	13.71	10.62
Merged-chr18-70420490-3	chr18	70420005	70421005	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51949.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	2.86	1.38	5.55	4.72	3.27	1.61	2.11	3.98	7.49
Merged-chr11-100399538-3	chr11	100399035	100400035	+	966.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132425, intron 1 of 3)	intron (NR_132425, intron 1 of 3)	1419.0	NR_132425	102635937.0	Mm.421398	NR_132425		Gm12348	-	predicted gene 12348	ncRNA	77.8	59.44	45.32	58.7	27.06	44.21	44.36	43.33	31.23
Merged-chr2-6715892-3	chr2	6715367	6716367	+	966.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	5795.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	58.92	57.6	62.9	58.03	38.72	52.25	57.03	36.7	49.34
Merged-chr6-115764262-5	chr6	115763717	115764717	+	966.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1751.0	NM_001168256	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	57.78	52.53	40.7	50.6	48.98	38.58	74.99	84.45	36.22
Merged-chr17-34837680-3	chr17	34837216	34838216	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019442)	promoter-TSS (NM_019442)	697.0	NM_001163770	112403.0	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	165.32	144.23	139.67	148.44	129.22	87.61	178.5	264.42	100.55
Merged-chr4-141637666-1	chr4	141637166	141638166	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-13832.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	24.03	22.12	34.22	29.69	23.79	36.97	63.37	54.39	23.73
Merged-chr18-35063539-3	chr18	35063032	35064032	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-55380.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	5.15	3.23	1.85	5.4	5.13	2.41	5.28	1.77	7.49
Merged-chr1-52158912-3	chr1	52158387	52159387	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 24 of 24)	intron (NM_001205313, intron 24 of 24)	39265.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	9.72	10.14	15.72	10.12	8.86	8.84	20.07	17.69	13.12
Merged-chr5-93094103-3	chr5	93093573	93094573	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	CpG	657.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	10.87	10.14	5.55	30.36	14.0	25.72	21.12	7.52	6.87
Merged-chr18-52270604-1	chr18	52270104	52271104	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60932.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	1.14	3.69	5.55	8.1	3.73	1.61	1.06	3.54	3.75
Merged-chr19-43931057-1	chr19	43930557	43931557	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	9141.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	58.35	62.21	30.52	89.06	93.3	69.93	31.69	30.95	20.61
Merged-chr3-65551335-3	chr3	65550827	65551827	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-21913.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	34.9	34.1	24.05	39.13	19.59	22.51	35.91	25.65	20.61
Merged-chr11-114897498-1	chr11	114896998	114897998	+	966.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170758, intron 3 of 6)	RSINE1|SINE|B4	7457.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	157.89	170.49	136.89	185.55	151.15	213.81	183.78	210.47	141.77
Merged-chr15-62181750-3	chr15	62181255	62182255	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	37696.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	12.01	7.37	4.62	10.12	6.06	10.45	15.84	6.63	9.37
Merged-chr17-87280116-3	chr17	87279621	87280621	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 2 of 4)	MER110-int|LTR|ERV1	2693.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	11.44	12.9	5.55	12.82	8.4	8.84	12.67	5.75	8.74
Merged-chr19-4332915-3	chr19	4332425	4333425	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26703.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	92.1	60.82	59.2	66.8	45.72	49.03	71.82	57.04	47.46
Merged-chr16-32672412-1	chr16	32671912	32672912	+	966.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-742.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	10.3	11.06	13.87	10.12	11.2	11.25	35.91	21.67	13.74
Merged-chr16-21925498-3	chr16	21925006	21926006	+	966.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172821, intron 11 of 12)	intron (NM_172821, intron 11 of 12)	22046.0	NM_025693	66664.0	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	5.72	6.91	0.0	16.87	9.8	8.04	19.01	7.96	7.49
Merged-chr5-122501527-4	chr5	122501080	122502080	+	966.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009722, exon 1 of 21)	exon (NM_009722, exon 1 of 21)	645.0	NM_001110140	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	351.24	217.95	189.62	317.12	192.2	250.78	243.98	144.15	143.02
Merged-chr18-61536684-4	chr18	61536133	61537133	+	966.2958369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177828)	promoter-TSS (NM_177828)	-97.0	NM_177828	328967.0	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	16.59	23.04	17.57	24.96	30.32	33.76	34.85	22.55	19.36
Merged-chr5-139742857-3	chr5	139742342	139743342	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6509.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	8.58	7.83	13.87	9.45	4.2	20.09	9.51	13.27	12.49
Merged-chr10-75834504-3	chr10	75834011	75835011	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010361, exon 1 of 5)	5' UTR (NM_010361, exon 1 of 5)	370.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	115.55	88.47	43.47	103.91	123.16	49.83	66.54	45.54	22.48
Merged-chrX-107149526-3	chrX	107149020	107150020	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122595)	promoter-TSS (NM_001122595)	66.0	NM_001122595	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	145.3	198.6	60.12	152.49	179.61	59.48	143.64	211.8	88.68
Merged-chr17-35274905-3	chr17	35274430	35275430	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11807.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	22.88	7.83	3.7	16.87	1.87	4.02	5.28	4.42	1.25
Merged-chr11-116020759-3	chr11	116020277	116021277	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	3727.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	38.33	23.5	29.6	39.81	18.19	12.86	21.12	15.48	15.61
Merged-chr14-70778217-3	chr14	70777675	70778675	+	966.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010071, exon 5 of 5)	3' UTR (NM_010071, exon 5 of 5)	3794.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	39.47	69.58	80.47	49.25	40.59	89.22	24.29	29.18	44.34
Merged-chr1-87622032-3	chr1	87621501	87622501	+	966.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	1689.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	205.94	171.41	83.25	190.27	118.96	125.39	175.33	218.87	122.41
Merged-chr1-144242687-3	chr1	144242180	144243180	+	966.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6424.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	28.03	7.83	8.32	14.84	8.4	15.27	5.28	9.29	5.0
Merged-chr3-9002734-3	chr3	9002238	9003238	+	966.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1466.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	114.98	119.34	67.52	87.71	105.9	75.56	106.67	124.69	59.95
Merged-chr2-170155135-3	chr2	170154643	170155643	+	966.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12468.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	96.11	93.08	109.14	105.93	74.64	84.4	119.35	133.53	102.42
Merged-chr18-5819922-3	chr18	5819458	5820458	+	966.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227311.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	28.6	23.04	27.75	29.01	23.79	42.6	62.31	54.39	24.36
Merged-chr4-156204026-3	chr4	156203527	156204527	+	966.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030671, exon 1 of 1)	non-coding (NR_030671, exon 1 of 1)	743.0	NR_030671	100382.0	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	209.37	187.08	85.1	180.15	183.34	84.4	154.2	155.64	41.84
Merged-chr13-33964614-3	chr13	33964058	33965058	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163241)	promoter-TSS (NM_001163241)	-101.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	29.75	41.01	37.92	37.11	38.72	43.4	53.87	53.94	36.85
Merged-chr12-25093480-4	chr12	25092961	25093961	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010496)	TTS (NM_010496)	2631.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	171.62	117.04	54.57	118.08	78.37	28.13	49.64	54.83	30.6
Merged-chr1-170255710-3	chr1	170255209	170256209	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151590)	promoter-TSS (NR_151590)	30.0	NR_151590	622708.0	Mm.389210	NR_151590	ENSMUSG00000096964	Gm6345	EG622708	predicted gene 6345	pseudo	30.89	27.65	27.75	78.94	63.91	59.48	80.27	55.71	38.1
Merged-chr19-14677186-3	chr19	14676696	14677696	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-79013.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.43	8.75	3.7	4.72	6.06	6.43	5.28	6.19	6.25
Merged-chr12-33132071-3	chr12	33131528	33132528	+	966.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	intron (NR_015602, intron 4 of 5)	15558.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	18.31	14.75	21.27	18.22	14.0	9.65	19.01	13.27	9.99
Merged-chr14-19986871-3	chr14	19986344	19987344	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9595.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	141.87	174.18	130.42	151.81	136.22	120.57	95.06	141.49	99.3
Merged-chr15-27596936-3	chr15	27596438	27597438	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25444.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	66.36	62.21	29.6	116.05	140.89	93.24	39.08	42.01	26.23
Merged-chr17-81433299-3	chr17	81432802	81433802	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305085.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	34.32	28.57	24.05	24.29	11.66	9.65	19.01	34.05	19.98
Merged-chr9-21181585-3	chr9	21181098	21182098	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	CpG	-2503.0	NM_001310750	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	33.18	27.65	18.5	25.64	20.06	57.87	48.58	15.48	29.98
Merged-chr10-79940902-3	chr10	79940400	79941400	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 3 of 8)	intron (NM_001288625, intron 3 of 8)	13559.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	13.73	5.07	1.85	10.12	5.6	4.82	9.51	5.31	3.75
Merged-chr4-116177170-3	chr4	116176672	116177672	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3800.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	72.65	69.12	78.62	93.79	75.11	118.96	90.83	110.1	78.69
Merged-chr16-36662864-3	chr16	36662355	36663355	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	3222.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	219.67	219.79	103.59	221.31	177.74	148.7	160.54	243.63	105.55
Merged-chr17-78373968-3	chr17	78373446	78374446	+	966.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	44206.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	54.35	51.61	52.72	64.1	29.86	61.09	48.58	41.12	16.24
Merged-chr10-67115746-3	chr10	67115248	67116248	+	966.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11510.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	162.46	114.74	103.59	153.84	72.31	75.56	107.73	73.84	52.46
Merged-chr17-23706880-3	chr17	23706372	23707372	+	966.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19464.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	73.79	43.31	39.77	31.04	22.86	33.76	27.46	17.69	14.99
Merged-chr3-97628690-3	chr3	97628202	97629202	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161765)	promoter-TSS (NM_001161765)	-102.0	NM_010232	14263.0	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	20.02	28.57	22.2	26.31	26.59	46.62	34.85	19.9	19.98
Merged-chr11-11685564-3	chr11	11685059	11686059	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-366.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	144.16	122.11	99.89	125.5	93.3	89.22	97.17	54.83	77.44
Merged-chr14-71334248-3	chr14	71333744	71334744	+	966.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	82971.0	NR_046076	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	8.01	10.6	3.7	2.7	5.13	1.61	5.28	1.33	3.75
Merged-chr8-120750792-3	chr8	120750284	120751284	+	966.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	12145.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	28.6	16.59	29.6	39.81	22.86	38.58	24.29	38.91	19.36
Merged-chr4-105291611-3	chr4	105291043	105292043	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134196.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	32.04	20.27	24.97	26.31	17.26	36.17	36.97	38.03	21.23
Merged-chr1-191955344-3	chr1	191954851	191955851	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22019.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	19.45	20.74	27.75	26.99	21.46	40.19	15.84	13.27	14.36
Merged-chr11-94075034-1	chr11	94074534	94075534	+	966.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	MTEb|LTR|ERVL-MaLR	30829.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.86	2.76	0.0	159.91	88.64	56.27	188.0	248.5	54.33
Merged-chr13-23431507-3	chr13	23431028	23432028	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	-511.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	81.23	74.65	61.05	59.38	34.52	81.18	98.23	68.98	61.83
Merged-chr3-61344707-3	chr3	61344204	61345204	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-19803.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	52.06	35.94	57.35	33.06	14.0	29.74	34.85	19.01	39.35
Merged-chr11-96411033-2	chr11	96410529	96411529	+	966.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45271.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	7.44	5.53	5.55	64.77	37.79	36.97	12.67	10.61	6.25
Merged-chr17-42937689-3	chr17	42937200	42938200	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61276.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	16.59	22.58	9.25	19.57	12.6	14.47	20.07	21.22	23.11
Merged-chr5-3421408-3	chr5	3420905	3421905	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	L1_Mus1|LINE|L1	77512.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	88.67	78.79	57.35	109.98	69.51	77.16	94.0	91.09	81.19
Merged-chr4-47347222-3	chr4	47346722	47347722	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6000.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	20.02	16.59	10.17	31.71	16.33	13.66	26.4	30.51	8.74
Merged-chr13-45002219-3	chr13	45001715	45002715	+	966.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025772)	promoter-TSS (NM_025772)	-119.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	195.64	165.88	162.79	170.03	186.6	106.9	196.45	175.1	64.95
Merged-chr15-59809166-1	chr15	59808666	59809666	+	966.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14207.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	234.54	214.26	160.94	195.67	134.82	165.58	196.45	230.37	109.92
Merged-chr17-37492162-3	chr17	37491661	37492661	+	965.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146328)	promoter-TSS (NM_146328)	-307.0	NM_146328	258325.0	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	21.17	13.36	17.57	14.84	12.6	21.7	6.34	11.94	7.49
Merged-chr10-8862144-3	chr10	8861645	8862645	+	965.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	L2|LINE|L2	23925.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	48.05	34.1	19.42	62.75	28.92	38.58	41.19	57.92	16.86
Merged-chr13-110896078-3	chr13	110895571	110896571	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131194, intron 2 of 2)	intron (NR_131194, intron 2 of 2)	-7428.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	9.72	11.52	4.62	19.57	12.13	20.9	11.62	8.84	11.24
Merged-chr1-105999191-3	chr1	105998685	105999685	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8779.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	84.66	73.26	51.8	97.83	69.04	92.44	82.38	76.05	64.95
Merged-chr16-33178551-3	chr16	33178019	33179019	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	62.35	83.86	31.45	54.65	51.32	76.36	62.31	70.3	53.71
Merged-chr5-114783854-3	chr5	114783348	114784348	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	8708.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	18.88	12.44	12.95	8.77	9.33	8.04	20.07	14.59	3.12
Merged-chr16-57504890-3	chr16	57504377	57505377	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-44365.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	33.18	30.87	9.25	41.16	15.86	22.51	27.46	13.71	21.86
Merged-chr10-24173400-3	chr10	24172882	24173882	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24065.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	26.31	23.5	15.72	24.96	20.06	29.74	19.01	17.24	19.98
Merged-chr15-73017823-3	chr15	73017331	73018331	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	37981.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	21.17	17.05	1.85	18.22	13.06	6.43	9.51	11.94	14.36
Merged-chr6-129237006-3	chr6	129236546	129237546	+	965.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	MTE2a|LTR|ERVL-MaLR	999.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	181.91	176.02	174.82	128.87	80.24	124.59	224.97	237.89	124.91
Merged-chr16-22683817-3	chr16	22683310	22684310	+	965.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26579.0	NM_001346673	110197.0	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	2.86	10.6	7.4	6.75	2.33	4.82	3.17	1.77	3.75
Merged-chr10-15671875-3	chr10	15671364	15672364	+	965.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119913.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	5.72	6.45	5.55	11.47	4.2	4.02	8.45	8.4	0.62
Merged-chr10-116726230-2	chr10	116725725	116726725	+	965.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045345, intron 1 of 2)	intron (NR_045345, intron 1 of 2)	2952.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	9.15	7.37	1.85	13.49	6.06	6.43	28.52	25.2	26.23
Merged-chr13-37451684-3	chr13	37451186	37452186	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106341.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	38.33	19.81	24.05	48.58	24.26	31.35	41.19	21.22	14.36
Merged-chr2-152914647-3	chr2	152914121	152915121	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081044, intron 3 of 11)	intron (NM_001081044, intron 3 of 11)	3269.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	6.86	2.3	1.85	4.72	0.47	0.8	1.06	0.88	2.5
Merged-chr13-93230745-3	chr13	93230227	93231227	+	965.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-38310.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	113.27	92.62	61.05	62.07	50.38	76.36	83.44	79.15	48.71
Merged-chr4-88395925-3	chr4	88395425	88396425	+	965.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 37 of 43)	intron (NM_001081184, intron 37 of 43)	43001.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	3.43	3.23	1.85	6.75	3.27	0.0	3.17	1.33	1.25
Merged-chr8-107291520-3	chr8	107291022	107292022	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-1948.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	36.61	34.56	32.37	70.17	29.86	27.33	51.75	45.1	18.11
Merged-chr2-14340587-3	chr2	14340111	14341111	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47787.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	10.3	12.44	7.4	8.77	11.66	5.63	6.34	5.31	5.0
Merged-chr4-117478300-2	chr4	117477794	117478794	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	18758.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	1.72	1.38	7.4	1.35	2.33	6.43	4.22	1.33	2.5
Merged-chr11-60933706-3	chr11	60933218	60934218	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	1661.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	69.79	75.57	70.3	22.94	22.39	21.7	15.84	18.57	10.62
Merged-chr5-143526897-3	chr5	143526381	143527381	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347530, intron 1 of 6)	intron (NM_001347530, intron 1 of 6)	1112.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	122.42	105.52	113.77	107.28	89.57	73.95	111.96	99.93	89.93
Merged-chr6-135065506-3	chr6	135064992	135065992	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181444)	promoter-TSS (NM_181444)	-170.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	6.86	5.53	6.47	6.07	3.73	0.0	3.17	2.21	1.25
Merged-chr1-33768208-3	chr1	33767697	33768697	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359274, intron 12 of 13)	intron (NM_001359274, intron 12 of 13)	-10447.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	38.33	40.55	39.77	28.34	32.66	30.54	59.15	56.6	26.85
Merged-chr15-101318311-3	chr15	101317801	101318801	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25089.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	14.87	17.05	13.87	10.8	8.4	28.13	19.01	4.42	14.99
Merged-chr11-4190801-3	chr11	4190293	4191293	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	3960.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	30.32	31.79	21.27	47.23	42.92	32.96	29.57	16.36	12.49
Merged-chr5-146764801-3	chr5	146764287	146765287	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 2 of 8)	MTC|LTR|ERVL-MaLR	30169.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	27.46	26.26	24.05	23.62	19.59	15.27	36.97	35.37	39.35
Merged-chr2-155533621-1	chr2	155533121	155534121	+	965.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	Charlie2a|DNA|hAT-Charlie	15578.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.0	3.23	1.85	62.75	58.31	42.6	1.06	5.31	0.0
Merged-chr6-31208424-3	chr6	31207926	31208926	+	965.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	10048.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	62.35	43.31	17.57	77.59	77.44	57.07	64.43	67.65	24.98
Merged-chr14-46761404-1	chr14	46760904	46761904	+	965.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360041, intron 1 of 7)	LTR79|LTR|ERVL	863.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	9.72	6.45	9.25	8.1	5.6	10.45	34.85	23.43	7.49
Merged-chr11-116490427-4	chr11	116489901	116490901	+	965.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026364)	promoter-TSS (NM_026364)	-55.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	95.53	82.02	63.82	93.11	63.91	78.77	91.89	70.75	45.59
Merged-chr10-88802438-3	chr10	88801937	88802937	+	965.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175158, intron 18 of 61)	MIR|SINE|MIR	24377.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	12.59	13.82	11.1	14.17	17.73	9.65	9.51	7.96	9.99
Merged-chr2-167960469-3	chr2	167959997	167960997	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28170.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	140.15	128.56	101.74	143.71	133.89	96.45	97.17	101.7	46.84
Merged-chr6-50074289-3	chr6	50073786	50074786	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	-35955.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	26.31	13.36	6.47	20.92	27.52	14.47	9.51	10.17	11.24
Merged-chr2-35196063-3	chr2	35195577	35196577	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	B1F1|SINE|Alu	5043.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	62.93	52.53	41.62	40.48	34.06	51.44	62.31	44.66	41.22
Merged-chr4-145267887-3	chr4	145267370	145268370	+	965.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21000.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	41.19	36.86	33.3	35.09	24.26	28.94	24.29	26.09	9.37
Merged-chr1-132335147-3	chr1	132334636	132335636	+	965.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19011.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	23.45	30.87	20.35	14.17	21.46	46.62	24.29	8.84	12.49
Merged-chr6-47455518-3	chr6	47454991	47455991	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355550, intron 1 of 21)	intron (NM_001355550, intron 1 of 21)	734.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	164.75	204.13	83.25	132.24	152.55	151.11	145.75	125.58	111.17
Merged-chr17-86978659-3	chr17	86978164	86979164	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	ORR1A4|LTR|ERVL-MaLR	15553.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	17.16	11.06	24.05	26.31	14.0	34.56	22.18	20.78	17.49
Merged-chr9-75630915-3	chr9	75630450	75631450	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027309, intron 1 of 2)	intron (NM_027309, intron 1 of 2)	5218.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	23.45	28.57	19.42	14.17	15.39	17.68	61.26	40.24	40.59
Merged-chr17-80391872-3	chr17	80391365	80392365	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18323.0	NR_028385	791338.0	Mm.204722	NR_028385		Gm10190	-	predicted gene 10190	ncRNA	8.58	5.53	3.7	8.77	2.8	8.04	16.9	12.38	5.0
Merged-chr7-29783975-3	chr7	29783481	29784481	+	965.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360207)	promoter-TSS (NM_001360207)	13.0	NM_001360209	22693.0	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	32.04	39.17	39.77	41.83	34.06	45.82	11.62	6.19	6.25
Merged-chr7-27342802-1	chr7	27342302	27343302	+	965.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138676, intron 16 of 17)	intron (NM_138676, intron 16 of 17)	-5190.0	NM_175641	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.0	0.46	0.92	2.7	0.93	4.02	3.17	2.21	3.75
Merged-chr8-13673449-3	chr8	13672920	13673920	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	4167.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	75.51	85.25	108.22	103.91	75.57	105.3	119.35	82.69	63.08
Merged-chr6-70855709-3	chr6	70855195	70856195	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	L2|LINE|L2	11180.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	94.39	106.44	90.65	56.0	68.11	88.42	70.76	93.3	65.58
Merged-chr18-80469264-3	chr18	80468742	80469742	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026295, exon 1 of 13)	exon (NM_026295, exon 1 of 13)	425.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	342.09	253.43	184.07	307.0	218.33	167.99	241.87	207.82	139.89
Merged-chr8-79059502-3	chr8	79058992	79059992	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	31055.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	20.02	9.68	25.9	32.39	38.25	39.39	10.56	9.29	8.12
Merged-chr15-78983522-3	chr15	78982992	78983992	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024716, intron 1 of 13)	intron (NM_001024716, intron 1 of 13)	436.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	57.21	79.72	57.35	77.59	78.84	69.13	111.96	91.09	45.59
Merged-chr7-82811219-3	chr7	82810729	82811729	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55585.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	35.47	20.74	21.27	20.24	14.0	11.25	44.36	33.6	17.49
Merged-chr11-20915272-3	chr11	20914760	20915760	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84152.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	30.89	21.66	31.45	34.41	18.19	28.13	35.91	23.43	33.72
Merged-chr3-19216435-3	chr3	19215930	19216930	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	28135.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	16.59	14.75	16.65	60.05	57.38	56.27	60.2	88.43	37.47
Merged-chr2-4567806-3	chr2	4567311	4568311	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	8057.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	82.38	102.75	109.14	76.92	70.91	139.06	157.37	128.67	69.32
Merged-chr13-111536636-3	chr13	111536131	111537131	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151444, intron 1 of 1)	intron (NR_151444, intron 1 of 1)	13278.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	30.32	19.35	10.17	26.31	13.53	8.04	19.01	12.82	19.98
Merged-chr5-122901838-3	chr5	122901338	122902338	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-1488.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	42.33	21.66	20.35	48.58	11.66	12.86	28.52	19.46	16.86
Merged-chr5-111059596-3	chr5	111059096	111060096	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	55452.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	6.86	14.75	5.55	26.31	17.26	3.22	10.56	4.42	4.37
Merged-chr19-11808603-3	chr19	11808097	11809097	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	10806.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	48.05	37.78	36.07	39.81	20.06	36.97	30.63	22.11	19.98
Merged-chr16-49930358-3	chr16	49929860	49930860	+	965.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25470.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	43.48	25.8	17.57	42.51	24.26	20.09	48.58	31.84	28.73
Merged-chr12-52603278-5	chr12	52602782	52603782	+	965.613342	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045910)	promoter-TSS (NR_045910)	-960.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	307.76	317.02	149.84	286.75	270.57	155.13	295.73	320.57	146.14
Merged-chr8-84974428-3	chr8	84973925	84974925	+	965.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011563, exon 6 of 6)	3' UTR (NM_011563, exon 6 of 6)	4323.0	NM_008416	16477.0	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	64.64	68.66	52.72	50.6	45.72	32.15	74.99	103.91	50.59
Merged-chr7-7171298-3	chr7	7170800	7171800	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146179)	promoter-TSS (NM_146179)	-53.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	12.01	19.35	10.17	14.84	23.79	22.51	17.96	20.34	7.49
Merged-chr3-146177946-3	chr3	146177448	146178448	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 7 of 13)	intron (NM_001005846, intron 7 of 13)	27774.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	9.72	11.52	5.55	8.1	7.93	6.43	9.51	7.07	2.5
Merged-chr8-117282763-3	chr8	117282267	117283267	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	25748.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	106.97	58.52	31.45	90.41	44.78	40.99	50.7	49.96	16.24
Merged-chr4-156067755-3	chr4	156067251	156068251	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7949.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	9.15	6.91	0.0	10.8	6.06	5.63	13.73	4.86	1.87
Merged-chr17-85488899-3	chr17	85488406	85489406	+	965.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	129490.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	5.72	1.38	0.0	10.8	4.67	12.86	2.11	2.21	3.75
Merged-chr18-17726542-2	chr18	17726056	17727056	+	965.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-145566.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	9.15	10.14	10.17	18.89	17.26	19.29	8.45	4.86	10.62
Merged-chr14-50830108-3	chr14	50829597	50830597	+	965.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 45 of 54)	G-rich|Low_complexity|Low_complexity	22181.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	14.87	12.44	7.4	12.82	15.39	20.09	48.58	45.54	24.36
Merged-chr3-96812617-3	chr3	96812131	96813131	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163497, intron 1 of 3)	MIRb|SINE|MIR	1890.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	22.31	17.97	5.55	18.89	13.06	14.47	22.18	6.19	12.49
Merged-chr7-98818736-3	chr7	98818241	98819241	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16371.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.72	4.15	0.92	4.05	0.93	0.0	2.11	2.65	2.5
Merged-chr19-46309123-3	chr19	46308525	46309525	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177369, exon 13 of 23)	exon (NM_001177369, exon 13 of 23)	3095.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	22.31	8.29	1.85	10.12	8.4	3.22	9.51	1.77	2.5
Merged-chr11-84916383-3	chr11	84915870	84916870	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005223)	promoter-TSS (NM_001005223)	-4.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	21.74	18.89	19.42	25.64	23.33	12.86	34.85	20.34	12.49
Merged-chr5-66137372-3	chr5	66136864	66137864	+	965.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	PB1D10|SINE|Alu	13614.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	58.35	47.0	27.75	81.64	71.38	49.83	76.05	59.69	32.48
Merged-chr15-53104186-3	chr15	53103689	53104689	+	965.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	241994.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	20.59	23.96	12.95	25.64	14.0	17.68	21.12	9.29	11.87
Merged-chr4-123200225-1	chr4	123199725	123200725	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1328.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	14.87	14.28	10.17	0.67	1.87	0.0	1.06	0.0	2.5
Merged-chr10-111986616-3	chr10	111986142	111987142	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028608, exon 4 of 6)	exon (NM_028608, exon 4 of 6)	10622.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	13.73	12.9	11.1	26.31	24.26	29.74	9.51	17.69	9.99
Merged-chr11-59229961-3	chr11	59229454	59230454	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1687.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	51.48	64.51	54.57	39.81	26.12	66.71	45.42	59.69	58.08
Merged-chr7-28866110-2	chr7	28865615	28866615	+	965.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008496, exon 4 of 4)	exon (NM_008496, exon 4 of 4)	1729.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	9.15	7.37	7.4	7.42	10.26	11.25	12.67	5.75	3.75
Merged-chr11-70489421-2	chr11	70488915	70489915	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15859.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	299.76	243.29	170.19	304.97	192.2	222.65	226.02	272.82	149.89
Merged-chr7-125552997-2	chr7	125552482	125553482	+	965.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	700.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	249.99	289.83	203.49	182.85	207.13	123.78	309.46	373.19	150.51
Merged-chrX-139571291-3	chrX	139570808	139571808	+	965.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254761, intron 1 of 6)	B4A|SINE|B4	7968.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	9.72	11.98	21.27	12.14	6.06	12.06	12.67	13.71	11.24
Merged-chr4-134534522-3	chr4	134534026	134535026	+	965.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029759, intron 1 of 6)	CpG	570.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	88.67	63.59	75.85	81.64	68.58	61.09	91.89	92.86	80.56
Merged-chr4-46630530-3	chr4	46630028	46631028	+	965.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	19671.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	6.29	6.45	3.7	10.12	3.27	6.43	3.17	3.1	5.0
Merged-chr2-156065500-5	chr2	156065006	156066006	+	965.4619140000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139151, exon 1 of 12)	exon (NM_139151, exon 1 of 12)	293.0	NM_139151	245865.0	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	50.91	32.25	22.2	72.87	75.57	54.66	36.97	27.86	23.73
Merged-chr1-170174378-3	chr1	170173891	170174891	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133806, intron 1 of 10)	intron (NM_133806, intron 1 of 10)	573.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	153.88	166.34	110.07	212.54	181.01	139.06	216.52	188.36	95.55
Merged-chr5-120500264-3	chr5	120499776	120500776	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	3347.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	26.31	16.13	7.4	25.64	19.59	41.8	29.57	26.53	28.73
Merged-chr4-43058948-3	chr4	43058443	43059443	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310758)	promoter-TSS (NM_001310758)	-10.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	13.73	5.53	3.7	9.45	2.8	6.43	7.39	3.1	3.75
Merged-chr11-47032505-3	chr11	47032001	47033001	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	L2|LINE|L2	221702.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	12.01	14.28	10.17	10.8	10.73	9.65	5.28	3.98	3.75
Merged-chr13-58288035-3	chr13	58287533	58288533	+	965.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360894, exon 15 of 15)	exon (NM_001360894, exon 15 of 15)	-13845.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	5.72	2.3	0.0	5.4	5.6	1.61	5.28	2.65	0.0
Merged-chr1-191910786-3	chr1	191910281	191911281	+	965.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009579, exon 2 of 2)	3' UTR (NM_009579, exon 2 of 2)	-3254.0	NR_030669	98736.0	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	26.89	30.87	22.2	17.54	29.86	25.72	35.91	36.7	12.49
Merged-chr2-27772061-3	chr2	27771577	27772577	+	965.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61494.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	8.01	1.84	0.92	6.75	0.0	1.61	4.22	0.88	1.25
Merged-chr3-84069515-2	chr3	84069018	84070018	+	965.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29357.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	3.43	5.53	0.92	10.12	3.27	4.82	5.28	2.21	2.5
Merged-chr16-31192027-3	chr16	31191515	31192515	+	965.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	intron (NM_030138, intron 1 of 22)	9223.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	57.21	54.37	53.65	66.12	61.58	51.44	54.92	62.35	48.71
Merged-chr12-99979701-3	chr12	99979199	99980199	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	Lx7|LINE|L1	15200.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	65.21	55.29	46.25	134.27	73.71	58.68	43.3	63.67	36.85
Merged-chr17-71300553-3	chr17	71300075	71301075	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	10436.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	158.46	121.19	92.5	172.05	93.3	131.02	113.01	138.84	86.81
Merged-chr1-191110066-3	chr1	191109567	191110567	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11653.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	84.09	94.0	120.24	84.34	67.64	65.11	48.58	69.86	77.44
Merged-chr9-110678198-3	chr9	110677713	110678713	+	965.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	RLTR28|LTR|ERVL	21710.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	38.33	30.87	25.9	20.24	20.99	22.51	31.69	28.3	24.36
Merged-chr4-154026023-3	chr4	154025490	154026490	+	965.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163722)	promoter-TSS (NM_001163722)	54.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	17.73	11.06	22.2	9.45	16.33	10.45	8.45	2.21	11.24
Merged-chr17-59179264-2	chr17	59178764	59179764	+	965.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-165942.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.0	4.15	4.62	3.37	9.33	10.45	3.17	2.65	5.0
Merged-chr2-52999648-3	chr2	52999128	53000128	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	141760.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	29.17	19.81	20.35	18.89	17.73	29.74	19.01	12.38	25.61
Merged-chr13-43482006-3	chr13	43481500	43482500	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1027.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	145.87	157.13	113.77	114.03	142.29	150.31	136.25	183.06	96.8
Merged-chr4-16168600-3	chr4	16168097	16169097	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	4487.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	74.37	76.03	66.6	42.51	66.24	79.58	73.93	87.99	48.71
Merged-chr6-134791425-3	chr6	134790908	134791908	+	965.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-952.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	202.51	182.93	99.89	170.7	141.35	90.02	189.06	224.18	119.91
Merged-chr7-66839599-3	chr7	66839095	66840095	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033877)	promoter-TSS (NM_001033877)	-140.0	NM_001033877	233332.0	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	2.29	0.46	0.92	4.72	1.4	0.0	3.17	1.33	2.5
Merged-chr11-70655523-3	chr11	70655024	70656024	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011072)	promoter-TSS (NM_011072)	-874.0	NM_011072	18643.0	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	278.02	240.99	231.24	298.9	237.45	227.47	325.31	382.03	187.98
Merged-chrX-48127717-3	chrX	48127223	48128223	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289729, intron 14 of 20)	intron (NM_001289729, intron 14 of 20)	-18713.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	17.16	5.99	0.92	12.14	6.53	7.23	4.22	7.96	9.99
Merged-chr16-13796805-3	chr16	13796322	13797322	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039521, intron 10 of 17)	intron (NM_001039521, intron 10 of 17)	16123.0	NM_001039521	106298.0	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	66.36	53.91	84.17	37.78	41.52	58.68	57.03	63.67	33.1
Merged-chr4-19927202-3	chr4	19926702	19927702	+	965.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4636.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	14.3	8.75	3.7	22.94	16.33	8.84	6.34	11.94	11.24
Merged-chr6-39420272-4	chr6	39419720	39420720	+	965.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311109)	promoter-TSS (NM_001311109)	149.0	NM_018810	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	153.88	114.74	145.22	157.88	158.61	138.25	125.69	102.14	69.32
Merged-chr17-85574153-1	chr17	85573653	85574653	+	965.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44243.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.86	2.76	0.0	6.75	6.53	5.63	3.17	5.31	3.75
Merged-chr10-122642310-2	chr10	122641800	122642800	+	965.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6039.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	12.01	11.52	12.95	15.52	13.53	16.88	27.46	24.76	27.48
Merged-chr12-17711583-3	chr12	17711089	17712089	+	965.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	MTC|LTR|ERVL-MaLR	20780.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	77.8	91.7	86.95	78.27	52.72	52.25	125.69	110.98	57.46
Merged-chr4-56946849-3	chr4	56946416	56947416	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175518, exon 1 of 18)	exon (NM_175518, exon 1 of 18)	513.0	NM_175518	242474.0	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	78.37	44.7	80.47	57.35	66.24	81.18	70.76	31.39	39.35
Merged-chr15-73320787-3	chr15	73320284	73321284	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358045, exon 8 of 34)	exon (NM_001358045, exon 8 of 34)	-65902.0	NR_029561	387169.0		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	12.59	8.29	12.95	14.84	12.6	8.04	20.07	8.84	2.5
Merged-chr11-32607503-3	chr11	32606981	32607981	+	965.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 12 of 18)	L1MD|LINE|L1	-35074.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	12.59	13.82	6.47	10.12	8.4	12.06	8.45	10.61	6.87
Merged-chr8-23028424-5	chr8	23027954	23028954	+	965.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110783, intron 1 of 43)	intron (NM_001110783, intron 1 of 43)	-6645.0	NM_001277281	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	14.87	14.28	21.27	14.17	14.46	38.58	25.35	15.48	21.86
Merged-chr4-133651661-3	chr4	133651194	133652194	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-18265.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	74.37	67.27	81.4	64.1	37.32	75.56	63.37	74.73	64.33
Merged-chr4-62429863-3	chr4	62429362	62430362	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153504, intron 2 of 2)	intron (NM_153504, intron 2 of 2)	4864.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	13.16	10.6	5.55	24.96	6.06	8.04	7.39	2.65	6.25
Merged-chr18-62229945-3	chr18	62229450	62230450	+	965.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49850.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	20.02	36.86	21.27	18.22	20.99	14.47	30.63	29.18	28.73
Merged-chr11-117325722-3	chr11	117325236	117326236	+	965.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5979.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	35.47	34.56	51.8	37.78	17.73	27.33	41.19	17.24	19.36
Merged-chr2-68784900-3	chr2	68784386	68785386	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76555.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	1.72	2.3	1.85	7.42	3.27	0.0	2.11	1.33	2.5
Merged-chr7-81304301-3	chr7	81303800	81304800	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	40934.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	56.06	23.96	24.05	35.09	24.26	22.51	44.36	32.28	20.61
Merged-chr4-120885384-3	chr4	120884864	120885864	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 4 of 7)	B4A|SINE|B4	30565.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	38.9	48.38	45.32	53.3	48.52	65.11	32.74	31.84	28.1
Merged-chr2-30594982-3	chr2	30594464	30595464	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030137)	promoter-TSS (NM_030137)	-80.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	50.34	46.54	37.0	58.03	50.38	67.52	59.15	44.66	31.23
Merged-chr16-44991138-3	chr16	44990654	44991654	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47476.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	17.16	9.68	15.72	20.24	14.46	11.25	9.51	11.5	9.99
Merged-chr13-20212880-3	chr13	20212375	20213375	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	MIRb|SINE|MIR	122368.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	32.04	24.88	12.95	37.78	15.86	12.06	32.74	19.9	21.23
Merged-chr11-74572902-3	chr11	74572401	74573401	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 1 of 24)	intron (NM_001015046, intron 1 of 24)	17257.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	4.0	2.3	14.8	2.7	9.33	4.82	5.28	4.42	9.99
Merged-chr14-21194544-3	chr14	21194029	21195029	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 4 of 10)	MER76|LTR|ERVL	118377.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	14.3	12.44	3.7	26.99	18.19	14.47	14.79	11.5	9.99
Merged-chr10-44818799-3	chr10	44818296	44819296	+	965.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248418.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	3.43	5.07	11.1	9.45	5.13	9.65	4.22	3.54	6.25
Merged-chr6-86790636-2	chr6	86790125	86791125	+	965.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	2959.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	68.65	49.3	36.07	20.92	12.6	11.25	4.22	2.65	5.0
Merged-chr8-35123468-2	chr8	35122955	35123955	+	965.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157765.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.43	4.61	12.95	8.77	6.53	4.82	27.46	21.22	21.86
Merged-chr4-152152351-3	chr4	152151801	152152801	+	965.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207687)	promoter-TSS (NM_207687)	-94.0	NM_207687	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	8.58	11.52	19.42	22.27	16.33	17.68	9.51	10.17	8.74
Merged-chr19-46349001-3	chr19	46348517	46349517	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040418)	promoter-TSS (NR_040418)	-29.0	NR_040418	75579.0	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	21.74	13.82	18.5	28.34	14.46	27.33	21.12	12.82	13.74
Merged-chr7-102222431-3	chr7	102221921	102222921	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	-607.0	NR_111938	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	21.17	29.03	24.05	19.57	17.73	25.72	31.69	26.53	34.97
Merged-chr8-117305583-3	chr8	117305091	117306091	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-43579.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	15.45	21.2	12.95	29.69	18.19	21.7	38.02	26.09	18.74
Merged-chr10-20662550-3	chr10	20662033	20663033	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	RLTR28B|LTR|ERVL	62545.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	36.04	29.95	35.15	30.36	26.12	29.74	19.01	24.76	19.36
Merged-chrX-12858058-3	chrX	12857563	12858563	+	965.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78810.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	54.35	33.64	20.35	55.33	31.72	37.78	36.97	18.57	14.99
Merged-chr1-91249193-1	chr1	91248693	91249693	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-1111.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	8.58	8.29	4.62	12.14	3.73	10.45	5.28	2.21	2.5
Merged-chr16-17276323-3	chr16	17275836	17276836	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177473)	promoter-TSS (NM_177473)	36.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	9.15	12.44	9.25	30.36	24.72	8.84	12.67	10.61	3.75
Merged-chr6-76409589-3	chr6	76409087	76410087	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-832890.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	10.3	7.37	5.55	9.45	6.53	6.43	2.11	4.42	2.5
Merged-chr10-111132230-1	chr10	111131730	111132730	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-32572.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	16.02	16.59	12.95	14.17	11.66	16.08	11.62	8.4	4.37
Merged-chr1-178675597-1	chr1	178675097	178676097	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 2 of 14)	intron (NM_001161665, intron 2 of 14)	146472.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	22.31	21.2	29.6	2.7	1.87	6.43	1.06	0.0	6.25
Merged-chr5-27794132-1	chr5	27793632	27794632	+	965.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2582.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	5.72	1.38	5.55	3.37	0.93	0.0	2.11	6.63	11.24
Merged-chr2-84467578-1	chr2	84467078	84468078	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	MLT1B|LTR|ERVL-MaLR	6596.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	9.72	11.52	14.8	4.72	4.2	11.25	10.56	10.17	13.12
Merged-chr13-47362403-1	chr13	47361903	47362903	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	168400.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.72	4.15	0.0	3.37	1.87	2.41	0.0	3.54	1.25
Merged-chr9-53390398-1	chr9	53389898	53390898	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212445, intron 2 of 7)	intron (NM_212445, intron 2 of 7)	6375.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	17.16	18.43	14.8	29.01	13.06	19.29	25.35	26.53	16.24
Merged-chr9-56958911-1	chr9	56958411	56959411	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178374, intron 2 of 8)	B4A|SINE|B4	7987.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	30.89	31.33	40.7	24.96	22.86	30.54	40.14	40.24	26.23
Merged-chr13-37854078-3	chr13	37853572	37854572	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	26679.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	127.0	102.29	100.82	95.81	92.84	99.67	111.96	109.22	54.96
Merged-chr11-45808041-1	chr11	45807541	45808541	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045876)	promoter-TSS (NR_045876)	-42.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.14	4.15	2.77	8.1	5.13	3.22	7.39	2.21	3.12
Merged-chr2-157201651-3	chr2	157201156	157202156	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 1 of 21)	intron (NM_011249, intron 1 of 21)	2878.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	165.32	210.12	119.32	142.37	139.95	134.23	201.73	247.17	119.91
Merged-chr1-91250857-1	chr1	91250357	91251357	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	291.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	559.47	589.8	482.83	502.66	440.38	454.94	515.42	508.05	306.64
Merged-chr5-145205336-3	chr5	145204828	145205828	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167944, exon 1 of 4)	exon (NM_001167944, exon 1 of 4)	769.0	NM_001359188	22757.0	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	133.86	165.42	124.87	109.3	111.5	100.47	135.19	165.37	97.43
Merged-chr15-77956772-3	chr15	77956259	77957259	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168260)	promoter-TSS (NM_001168260)	-37.0	NM_001017983	239554.0	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	9.15	4.15	0.0	3.37	2.8	4.02	7.39	5.31	1.25
Merged-chr2-155367817-3	chr2	155367309	155368309	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-10385.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	76.08	65.43	101.74	18.89	17.26	26.53	72.88	84.01	52.46
Merged-chr15-81610482-3	chr15	81609983	81610983	+	965.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177821, exon 4 of 31)	exon (NM_177821, exon 4 of 31)	24269.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	4.58	12.44	13.87	18.22	14.0	5.63	13.73	10.17	11.24
Merged-chr2-73529891-1	chr2	73529391	73530391	+	965.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	-404.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	79.52	81.1	71.22	78.94	87.7	113.33	97.17	73.84	53.08
Merged-chr5-115532148-3	chr5	115531644	115532644	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	25468.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	81.23	52.07	85.1	56.68	34.06	50.64	70.76	62.35	25.61
Merged-chr11-116093884-3	chr11	116093369	116094369	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6874.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	69.79	60.82	48.1	57.35	43.85	57.87	48.58	44.66	49.96
Merged-chr19-44591296-3	chr19	44590806	44591806	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28452.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	16.02	8.29	7.4	20.92	11.66	9.65	7.39	6.63	4.37
Merged-chr17-80100080-3	chr17	80099565	80100565	+	964.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27406.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	9.72	4.15	3.7	10.12	10.26	8.04	9.51	8.4	6.25
Merged-chr5-64883672-3	chr5	64883191	64884191	+	964.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49008.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	137.86	109.21	86.95	139.67	80.24	78.77	107.73	131.32	83.69
Merged-chr2-73037889-2	chr2	73037375	73038375	+	964.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57429.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	16.59	9.68	12.02	47.23	42.92	49.83	50.7	47.31	27.48
Merged-chr11-46462180-3	chr11	46461698	46462698	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 3 of 6)	intron (NM_134250, intron 3 of 6)	7267.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	31.46	24.88	15.72	66.8	67.64	60.28	52.81	34.05	41.84
Merged-chr11-70562883-3	chr11	70562381	70563381	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045959)	promoter-TSS (NM_001045959)	0.0	NM_001045964	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	125.85	78.33	71.22	126.85	84.44	84.4	99.28	80.03	59.95
Merged-chr10-62486067-3	chr10	62485571	62486571	+	964.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358543, intron 1 of 7)	intron (NM_001358543, intron 1 of 7)	527.0	NM_001113355	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	288.89	314.25	222.91	253.02	331.22	264.45	255.6	312.17	205.47
Merged-chr2-167700951-3	chr2	167700432	167701432	+	964.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9755.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	121.28	123.49	123.94	154.51	146.02	150.31	129.91	171.12	71.82
Merged-chr11-45884222-3	chr11	45883701	45884701	+	964.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 2 of 11)	intron (NM_001045520, intron 2 of 11)	32237.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	15.45	12.9	7.4	11.47	11.2	12.86	13.73	8.84	5.62
Merged-chr10-117844381-3	chr10	117843868	117844868	+	964.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	1606.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	386.71	404.11	198.87	360.97	321.42	208.18	385.51	543.87	195.48
Merged-chr10-19570396-3	chr10	19569904	19570904	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21545.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	125.85	123.49	104.52	91.76	60.18	99.67	140.47	140.61	106.79
Merged-chr11-19965462-3	chr11	19964965	19965965	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	41023.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	46.91	46.54	22.2	41.83	19.13	24.11	29.57	14.15	19.98
Merged-chr2-75734360-3	chr2	75733856	75734856	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29693.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	78.37	74.65	48.1	116.05	100.77	105.3	130.97	129.11	67.45
Merged-chr2-65391531-3	chr2	65391016	65392016	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-27116.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	12.59	8.29	0.92	8.77	7.46	4.82	13.73	7.07	7.49
Merged-chr5-101998435-3	chr5	101997947	101998947	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	71474.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	151.59	129.94	103.59	218.61	145.08	141.47	166.88	150.78	72.45
Merged-chr4-133660214-3	chr4	133659695	133660695	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12452.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	89.81	94.46	100.82	120.77	103.56	145.49	80.27	94.62	76.19
Merged-chr6-34607991-2	chr6	34607485	34608485	+	964.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	9481.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	8.58	11.52	11.1	12.14	13.53	8.84	15.84	19.9	13.12
Merged-chr19-4042328-3	chr19	4041829	4042829	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181796)	promoter-TSS (NM_181796)	-108.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	10.3	10.6	9.25	18.22	16.79	24.11	12.67	17.69	17.49
Merged-chr11-62675912-3	chr11	62675405	62676405	+	964.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27241.0	NM_175002	216829.0	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	4.58	3.23	3.7	15.52	7.0	6.43	2.11	2.65	0.0
Merged-chr11-3863926-3	chr11	3863414	3864414	+	964.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152818)	promoter-TSS (NM_152818)	-11.0	NM_152818	74309.0	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	3.43	2.3	0.0	9.45	3.27	3.22	3.17	0.0	3.12
Merged-chr7-19217709-3	chr7	19217224	19218224	+	964.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175668, intron 1 of 1)	ID4_|SINE|ID	5186.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	13.16	17.05	16.65	26.31	12.13	24.92	3.17	10.61	6.25
Merged-chr14-101516747-3	chr14	101516250	101517250	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	RMER19B|LTR|ERVK	92441.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	36.61	25.8	12.02	42.51	26.59	24.92	27.46	28.3	14.36
Merged-chr2-93187492-3	chr2	93186990	93187990	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356535)	promoter-TSS (NM_001356535)	-58.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	8.01	2.3	1.85	3.37	0.93	1.61	3.17	2.65	1.87
Merged-chr4-128925177-3	chr4	128924664	128925664	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	37291.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	23.45	21.2	18.5	39.13	12.13	28.13	43.3	34.93	24.36
Merged-chr11-75106804-3	chr11	75106290	75107290	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	L2a|LINE|L2	-40799.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	46.34	64.51	58.27	66.12	36.85	59.48	38.02	60.58	34.97
Merged-chr4-156228010-3	chr4	156227511	156228511	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008233, intron 2 of 15)	intron (NM_001008233, intron 2 of 15)	531.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	28.6	15.21	31.45	29.01	10.26	17.68	23.24	23.88	16.86
Merged-chr7-129994945-3	chr7	129994446	129995446	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	32781.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	13.73	8.29	20.35	16.19	12.6	16.88	10.56	11.5	17.49
Merged-chr3-90072500-3	chr3	90072011	90073011	+	964.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293748)	promoter-TSS (NM_001293748)	-140.0	NM_001293748	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	8.01	6.91	3.7	6.75	2.33	4.02	14.79	7.52	5.0
Merged-chr9-96325742-3	chr9	96325235	96326235	+	964.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	37980.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	6.29	9.68	5.55	5.4	4.67	2.41	20.07	14.59	8.74
Merged-chr7-3704199-5	chr7	3703759	3704759	+	964.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029767, intron 1 of 4)	CpG	218.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	139.01	141.0	118.39	149.79	105.43	138.25	163.71	170.68	129.9
Merged-chr8-83244307-3	chr8	83243783	83244783	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 9 of 20)	intron (NM_001111304, intron 9 of 20)	-46065.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	32.04	33.64	26.82	29.01	18.66	15.27	39.08	44.66	25.61
Merged-chr18-82857059-3	chr18	82856560	82857560	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125720, intron 2 of 2)	MIRc|SINE|MIR	1163.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	53.2	36.4	20.35	43.18	27.06	23.31	57.03	40.68	21.86
Merged-chr19-34148668-3	chr19	34148186	34149186	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024204, intron 2 of 5)	intron (NM_024204, intron 2 of 5)	17355.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	9.72	7.83	5.55	7.42	8.4	3.22	16.9	15.48	5.0
Merged-chr14-31428345-3	chr14	31427835	31428835	+	964.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	7765.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	57.21	44.24	27.75	68.15	44.32	45.82	62.31	41.56	33.1
Merged-chr8-10849705-3	chr8	10849252	10850252	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32702.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	37.18	24.88	11.1	84.34	48.98	42.6	22.18	11.94	3.75
Merged-chr9-46014498-3	chr9	46013992	46014992	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	1672.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	70.93	63.59	27.75	65.45	32.66	47.42	42.25	31.84	14.99
Merged-chr2-5804619-3	chr2	5804112	5805112	+	964.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356502, intron 8 of 11)	intron (NM_001356502, intron 8 of 11)	-40422.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	42.9	43.77	34.22	58.03	47.58	39.39	40.14	39.8	31.85
Merged-chr9-124021946-2	chr9	124021411	124022411	+	964.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009914)	promoter-TSS (NM_009914)	-60.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	68.65	88.93	67.52	103.91	83.04	69.93	23.24	13.27	29.98
Merged-chrX-157491364-3	chrX	157490950	157491950	+	964.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359185)	promoter-TSS (NM_001359185)	-82.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	58.35	32.72	39.77	38.46	20.06	28.94	62.31	19.9	23.73
Merged-chr2-18971755-3	chr2	18971232	18972232	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	URR1B|DNA|hAT-Charlie	26389.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	30.32	37.78	22.2	18.89	27.52	11.25	16.9	14.15	11.87
Merged-chr17-70753706-3	chr17	70753196	70754196	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	(A)n|Simple_repeat|Simple_repeat	93081.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	20.59	15.67	18.5	21.59	10.26	16.08	7.39	7.52	4.37
Merged-chr7-121981711-3	chr7	121981246	121982246	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	-53.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	80.09	91.24	31.45	82.32	88.64	52.25	59.15	57.92	51.21
Merged-chr8-126585782-3	chr8	126585307	126586307	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7629.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	62.35	65.43	59.2	76.24	73.71	48.23	98.23	87.55	45.59
Merged-chr9-51030371-3	chr9	51029873	51030873	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21300.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	18.88	25.8	7.4	25.64	22.39	12.06	12.67	9.73	10.62
Merged-chr3-137991363-3	chr3	137990876	137991876	+	964.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9827.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	9.15	5.07	1.85	6.07	3.73	4.82	4.22	5.75	6.87
Merged-chr2-163758363-2	chr2	163757875	163758875	+	964.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8136.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	30.32	17.97	15.72	50.6	32.66	18.49	7.39	15.48	5.0
Merged-chr18-9486097-2	chr18	9485585	9486585	+	964.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35931.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	33.18	18.43	3.7	73.54	74.17	15.27	61.26	57.04	7.49
Merged-chr7-90042605-3	chr7	90042105	90043105	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110364, intron 5 of 5)	intron (NR_110364, intron 5 of 5)	13446.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	169.9	139.62	114.69	221.98	163.28	200.14	268.27	228.6	149.89
Merged-chr13-28958004-3	chr13	28957514	28958514	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4315.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	50.34	21.66	24.05	61.4	30.32	50.64	10.56	13.27	3.12
Merged-chr1-128014125-3	chr1	128013610	128014610	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	B4|SINE|B4	88361.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	20.02	32.25	22.2	37.11	37.32	38.58	26.4	30.51	19.98
Merged-chr8-111180161-3	chr8	111179642	111180642	+	964.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 10 of 25)	intron (NM_009149, intron 10 of 25)	-34644.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	30.89	29.03	25.9	53.3	50.85	70.73	40.14	31.39	36.85
Merged-chr8-84660180-3	chr8	84659691	84660691	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2661.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	33.75	23.5	24.05	22.27	11.2	21.7	15.84	22.99	3.75
Merged-chr18-34958550-3	chr18	34958062	34959062	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4211.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	132.72	162.2	59.2	138.32	139.02	146.29	128.85	166.7	99.92
Merged-chr10-88683597-3	chr10	88683093	88684093	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011461)	promoter-TSS (NM_011461)	-570.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	202.51	164.96	88.8	212.54	118.96	102.08	210.18	164.04	58.08
Merged-chr15-73184077-3	chr15	73183571	73184571	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	876.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	145.87	152.06	90.65	132.24	160.01	113.33	148.92	123.36	85.56
Merged-chr17-34647594-3	chr17	34647116	34648116	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017406, intron 1 of 17)	CpG	470.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	109.83	111.97	83.25	152.49	124.56	129.41	71.82	92.41	59.95
Merged-chr5-99298161-3	chr5	99297665	99298665	+	964.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-45238.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	58.35	55.75	46.25	70.17	52.25	61.89	85.55	68.09	33.1
Merged-chr5-5380365-5	chr5	5380000	5381000	+	964.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011074)	promoter-TSS (NM_011074)	-249.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	49.2	39.63	67.52	48.58	33.59	39.39	98.23	29.18	40.59
Merged-chr17-28697515-3	chr17	28697026	28698026	+	964.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	4958.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	127.0	97.69	63.82	97.83	64.38	65.91	68.65	56.6	72.45
Merged-chr16-57455808-3	chr16	57455313	57456313	+	964.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-93429.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	15.45	8.29	1.85	7.42	5.6	3.22	11.62	3.54	7.49
Merged-chr7-89346244-3	chr7	89345726	89346726	+	964.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	MLT1J|LTR|ERVL-MaLR	-7439.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	13.16	11.98	0.0	10.8	6.06	4.82	3.17	7.96	0.0
Merged-chr4-148087524-3	chr4	148087040	148088040	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	524.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	89.24	101.37	82.32	99.18	93.77	159.95	144.7	113.19	129.28
Merged-chr6-43384559-2	chr6	43384062	43385062	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57867.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	20.59	13.36	24.97	23.62	20.06	20.9	12.67	13.27	10.62
Merged-chr2-45107746-2	chr2	45107282	45108282	+	964.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	2495.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	94.96	152.98	104.52	136.97	119.89	139.06	198.56	206.49	99.3
Merged-chr11-94474420-3	chr11	94473912	94474912	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001112813)	promoter-TSS (NM_001112813)	-214.0	NM_001112813	12291.0	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	8.58	3.69	9.25	3.37	3.73	4.82	2.11	2.65	1.25
Merged-chr6-140750701-3	chr6	140750171	140751171	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123786.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	78.37	67.27	34.22	66.8	102.63	77.97	86.61	115.85	43.72
Merged-chr2-58932391-3	chr2	58931880	58932880	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	177196.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	14.87	16.59	12.02	22.27	13.53	15.27	15.84	16.36	9.99
Merged-chr19-32903935-3	chr19	32903427	32904427	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146350.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	33.18	21.2	9.25	30.36	17.26	29.74	22.18	11.05	14.36
Merged-chr10-19548202-3	chr10	19547718	19548718	+	964.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-43731.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	63.5	88.01	52.72	73.54	48.52	62.7	63.37	92.41	84.31
Merged-chr5-137871800-3	chr5	137871306	137872306	+	964.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-48.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	25.74	34.56	37.0	43.18	33.12	54.66	51.75	34.49	34.97
Merged-chr13-37355786-3	chr13	37355291	37356291	+	964.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	92.1	126.25	84.17	90.41	78.37	76.36	73.93	110.54	89.31
Merged-chrX-100518783-3	chrX	100518291	100519291	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6047.0	NM_001114084	668257.0	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	13.16	13.36	5.55	14.17	13.06	21.7	9.51	22.55	18.11
Merged-chr12-108766590-3	chr12	108766096	108767096	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26715.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	120.13	112.89	156.32	102.56	117.56	127.8	110.9	136.19	98.68
Merged-chr5-64392701-3	chr5	64392223	64393223	+	964.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	75219.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	83.52	59.44	44.4	82.99	43.39	55.46	54.92	39.35	34.97
Merged-chr3-101924431-3	chr3	101923881	101924881	+	964.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039371)	promoter-TSS (NM_001039371)	72.0	NM_001039371	242126.0	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	9.15	5.07	8.32	3.37	5.6	8.04	8.45	1.77	2.5
Merged-chr8-60870984-3	chr8	60870484	60871484	+	964.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19409.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	7.44	2.3	1.85	6.07	9.8	6.43	4.22	1.33	8.74
Merged-chr11-34048782-3	chr11	34048291	34049291	+	964.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	MIRb|SINE|MIR	1863.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	140.73	167.73	149.84	125.5	118.96	111.73	188.0	176.87	99.92
Merged-chr9-40628391-2	chr9	40627886	40628886	+	964.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57578.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	9.15	12.9	10.17	12.14	9.8	3.22	4.22	3.54	1.25
Merged-chr1-105926582-3	chr1	105926089	105927089	+	964.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	63693.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	46.34	78.79	43.47	85.01	92.37	53.85	87.66	133.98	56.21
Merged-chr4-37412968-3	chr4	37412463	37413463	+	964.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163560.0	NR_151605	102636890.0	Mm.109154	NR_151605	ENSMUSG00000086026	Gm12374	-	predicted gene 12374	ncRNA	11.44	8.75	5.55	12.14	8.4	12.86	5.28	7.07	6.25
Merged-chr10-59328026-3	chr10	59327517	59328517	+	964.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	4721.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	32.61	23.96	46.25	41.16	29.86	25.72	31.69	31.84	16.24
Merged-chr1-33719973-3	chr1	33719473	33720473	+	964.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008999)	promoter-TSS (NM_008999)	77.0	NM_008999	19335.0	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	3.43	5.99	6.47	6.75	8.4	6.43	8.45	6.19	3.12
Merged-chr5-118380694-5	chr5	118380199	118381199	+	964.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135472.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	65.79	85.71	87.87	127.52	140.42	120.57	116.18	98.6	49.96
Merged-chr11-58171719-3	chr11	58171240	58172240	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	86.0	NM_175001	216767.0	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	34.32	34.56	23.12	27.66	26.12	30.54	39.08	18.57	24.36
Merged-chr4-9643175-1	chr4	9642675	9643675	+	964.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	542.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	49.2	30.87	36.07	67.47	54.58	65.11	174.27	221.08	73.07
Merged-chrX-103551453-1	chrX	103550953	103551953	+	964.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5953.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	2.86	5.07	7.4	10.8	12.6	8.04	8.45	2.21	5.0
Merged-chr9-85369731-3	chr9	85369252	85370252	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42602.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	64.64	72.8	41.62	45.88	39.65	49.03	58.09	38.03	25.61
Merged-chr5-8798454-4	chr5	8797925	8798925	+	964.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152133)	promoter-TSS (NR_152133)	98.0	NR_152133	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	6.29	5.07	5.55	12.82	7.0	5.63	2.11	5.75	8.74
Merged-chr1-24613094-2	chr1	24612571	24613571	+	964.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25634.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	36.04	34.1	1.85	16.19	4.2	0.0	0.0	0.0	0.0
Merged-chr8-105565483-2	chr8	105564985	105565985	+	964.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	579.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	444.49	523.45	364.43	445.31	485.64	329.55	425.64	551.82	230.45
Merged-chr4-132796359-3	chr4	132795881	132796881	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033308)	promoter-TSS (NM_001033308)	-17.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	168.18	134.09	95.27	154.51	97.03	102.88	223.91	265.3	99.92
Merged-chr2-91132256-3	chr2	91131744	91132744	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008653, intron 22 of 31)	B3|SINE|B2	14100.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	10.87	13.82	29.6	9.45	9.33	24.11	7.39	7.07	14.36
Merged-chr2-120563834-3	chr2	120563335	120564335	+	964.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	24.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	256.85	211.5	219.21	246.27	161.88	176.03	292.56	342.68	189.86
Merged-chr6-48840444-3	chr6	48839966	48840966	+	964.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023056, exon 1 of 7)	5' UTR (NM_023056, exon 1 of 7)	522.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	44.05	56.68	47.17	26.31	34.06	35.37	39.08	42.01	34.35
Merged-chr18-65565820-1	chr18	65565320	65566320	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-14410.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	1.14	1.84	1.85	2.7	2.33	4.02	4.22	0.44	0.0
Merged-chr12-108629764-3	chr12	108629254	108630254	+	964.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	RLTR14|LTR|ERV1	-5999.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	24.03	26.73	20.35	21.59	16.33	15.27	14.79	20.78	14.99
Merged-chr7-47056491-2	chr7	47055995	47056995	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5855.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	112.12	112.43	70.3	175.43	170.28	132.63	143.64	138.4	43.09
Merged-chr15-38553660-2	chr15	38553150	38554150	+	964.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045757, intron 2 of 2)	ORR1A4|LTR|ERVL-MaLR	-34384.0	NM_018745	54375.0	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	4.58	3.69	0.0	18.89	9.8	4.82	8.45	5.31	3.75
Merged-chr2-112266407-3	chr2	112265908	112266908	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133649)	promoter-TSS (NM_133649)	94.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	200.22	186.62	151.69	155.19	208.53	151.11	214.41	299.35	101.8
Merged-chr2-22826423-3	chr2	22825917	22826917	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 4 of 13)	ORR1E|LTR|ERVL-MaLR	52090.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	16.59	23.5	15.72	21.59	15.86	26.53	30.63	22.55	13.12
Merged-chr1-166360380-3	chr1	166359876	166360876	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18791.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	4.0	0.92	3.7	4.72	1.87	1.61	3.17	1.77	5.0
Merged-chr1-74808311-3	chr1	74807809	74808809	+	964.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16290.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	1.72	1.38	0.92	3.37	1.4	1.61	3.17	3.54	4.37
Merged-chr11-105363063-3	chr11	105362546	105363546	+	964.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172568, intron 11 of 11)	CpG	70400.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	17.16	10.14	9.25	8.1	12.13	11.25	14.79	5.31	1.25
Merged-chr4-62470922-3	chr4	62470418	62471418	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290521)	promoter-TSS (NM_001290521)	-19.0	NM_001290521	71354.0	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	7.44	2.3	5.55	6.07	3.27	12.86	4.22	3.1	2.5
Merged-chr1-193833484-3	chr1	193832987	193833987	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-325957.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	12.59	7.37	3.7	10.8	7.93	20.09	6.34	4.86	2.5
Merged-chr5-122131782-3	chr5	122131315	122132315	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3078.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	125.85	66.81	39.77	102.56	83.97	57.07	103.51	89.32	31.23
Merged-chr7-97164480-3	chr7	97163999	97164999	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	82748.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	40.04	45.16	29.6	35.76	41.52	24.11	28.52	37.14	24.98
Merged-chr15-81871942-3	chr15	81871440	81872440	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080633)	promoter-TSS (NM_080633)	-48.0	NM_026737	68479.0	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	274.59	250.67	166.49	202.42	167.48	177.64	262.99	284.31	149.26
Merged-chr2-70877891-3	chr2	70877406	70878406	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52426.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	42.33	45.62	46.25	68.15	56.91	43.4	80.27	94.62	28.73
Merged-chr8-88633620-3	chr8	88633118	88634118	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	2510.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	90.96	60.82	55.5	10.8	6.53	4.82	69.71	56.16	38.1
Merged-chr7-82838576-3	chr7	82838100	82839100	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-28733.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	4.58	4.15	25.9	8.1	8.4	7.23	12.67	14.59	17.49
Merged-chr17-21536257-3	chr17	21535738	21536738	+	964.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-360.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	40.62	44.7	48.1	41.16	41.52	40.19	73.93	70.75	33.1
Merged-chr6-145866709-3	chr6	145866178	145867178	+	964.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1258.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	73.22	65.43	29.6	234.8	240.72	151.92	35.91	32.28	8.74
Merged-chr9-111070831-3	chr9	111070316	111071316	+	964.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13298.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	12.01	6.91	7.4	12.14	7.0	8.04	4.22	3.1	1.25
Merged-chr6-48445569-3	chr6	48445054	48446054	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	271.0	NM_020589	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	48.62	33.18	77.7	27.66	32.66	67.52	59.15	42.89	48.09
Merged-chr16-20085767-3	chr16	20085266	20086266	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11788.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	12.59	19.81	14.8	16.19	18.66	32.15	23.24	22.55	18.11
Merged-chr13-55432509-3	chr13	55431999	55432999	+	964.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-5695.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	53.2	27.65	9.25	31.04	23.79	22.51	42.25	24.76	28.1
Merged-chr5-123394012-3	chr5	123393510	123394510	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177582)	promoter-TSS (NM_177582)	-788.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	103.54	99.99	94.35	139.67	99.37	85.2	129.91	136.63	65.58
Merged-chr2-132463604-3	chr2	132463104	132464104	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27124.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	11.44	12.9	7.4	14.17	10.26	11.25	14.79	18.13	9.37
Merged-chr3-51662842-3	chr3	51662350	51663350	+	964.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174995, intron 1 of 4)	intron (NM_174995, intron 1 of 4)	1671.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	9.72	4.15	10.17	10.12	1.87	1.61	4.22	3.98	3.12
Merged-chr18-5345047-4	chr18	5344499	5345499	+	964.107178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10192.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	25.17	36.86	48.1	42.51	49.45	72.34	59.15	48.64	21.23
Merged-chr1-43735494-2	chr1	43734994	43735994	+	964.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024283, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4892.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	14.87	5.99	8.32	10.8	8.4	21.7	19.01	16.8	17.49
Merged-chr7-142396757-3	chr7	142396247	142397247	+	964.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8877.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	120.13	115.2	101.74	79.62	58.31	59.48	114.07	110.1	65.58
Merged-chr19-11485471-3	chr19	11484977	11485977	+	964.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6561.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	25.17	32.72	30.52	24.29	34.52	34.56	24.29	18.57	18.11
Merged-chr7-97376106-3	chr7	97375608	97376608	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199035, intron 2 of 12)	intron (NM_199035, intron 2 of 12)	4491.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	22.88	14.75	27.75	10.8	14.0	21.7	29.57	10.17	30.6
Merged-chr2-52956117-3	chr2	52955612	52956612	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	98244.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	112.12	77.87	64.75	166.66	110.56	123.78	118.29	149.89	73.69
Merged-chr5-95924737-3	chr5	95924245	95925245	+	964.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32194.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	21.74	41.47	33.3	23.62	20.06	27.33	26.4	12.38	18.74
Merged-chr1-85896915-3	chr1	85896415	85897415	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	2405.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	42.33	48.84	26.82	44.53	25.19	32.15	49.64	42.89	33.1
Merged-chr9-31174822-1	chr9	31174322	31175322	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 3 of 17)	intron (NM_001357698, intron 3 of 17)	37026.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	1.14	3.69	6.47	17.54	10.73	10.45	2.11	1.77	7.49
Merged-chr1-173632220-1	chr1	173631720	173632720	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175026, intron 1 of 6)	Lx2|LINE|L1	1361.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	26.31	21.66	24.05	8.1	7.0	2.41	16.9	20.78	5.0
Merged-chr8-13162314-3	chr8	13161824	13162824	+	964.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	3163.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	61.78	58.52	39.77	53.3	42.92	40.99	76.05	63.67	24.98
Merged-chr11-53494647-1	chr11	53494147	53495147	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14452.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	13.73	5.99	3.7	14.17	11.66	4.82	9.51	3.1	2.5
Merged-chr11-86596290-1	chr11	86595790	86596790	+	964.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-12132.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	8.01	6.91	15.72	12.14	7.93	11.25	16.9	28.74	18.11
Merged-chr1-74258832-1	chr1	74258332	74259332	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 7 of 10)	U6|snRNA|snRNA	-19768.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	13.73	13.82	37.0	24.96	13.06	36.17	25.35	26.53	26.85
Merged-chr12-73445810-1	chr12	73445310	73446310	+	964.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger9b|DNA|TcMar-Tigger	-36247.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	8.58	5.07	0.0	8.1	9.8	6.43	5.28	3.1	6.25
Merged-chr8-34805257-3	chr8	34804741	34805741	+	963.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2369.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	8.01	6.91	4.62	32.39	8.86	1.61	9.51	8.4	4.37
Merged-chr2-12023586-3	chr2	12023086	12024086	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	245833.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	3.43	8.29	1.85	6.07	6.53	6.43	6.34	3.54	5.0
Merged-chr3-27579434-3	chr3	27578942	27579942	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	5553.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	9.72	9.68	3.7	15.52	4.67	11.25	4.22	7.96	5.62
Merged-chr11-98741801-3	chr11	98741303	98742303	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313983)	promoter-TSS (NM_001313983)	18.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	90.96	45.62	81.4	100.53	53.18	104.49	133.08	68.98	38.72
Merged-chr14-73474959-3	chr14	73474459	73475459	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35090.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	37.18	27.65	13.87	26.31	32.19	24.11	22.18	35.82	17.49
Merged-chr1-152548174-3	chr1	152547678	152548678	+	963.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 8 of 17)	MTEb|LTR|ERVL-MaLR	77039.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	25.17	29.95	37.92	34.41	19.13	28.94	25.35	22.11	21.23
Merged-chr3-69722729-3	chr3	69722232	69723232	+	963.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133787, intron 2 of 15)	CpG-9222	677.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	144.73	109.67	75.85	221.98	174.01	93.24	214.41	174.21	53.08
Merged-chr1-36357332-2	chr1	36356826	36357826	+	963.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 5 of 20)	intron (NM_172652, intron 5 of 20)	-8568.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	2.29	3.23	10.17	28.34	17.73	33.76	50.7	33.6	21.23
Merged-chr6-50110776-2	chr6	50110276	50111276	+	963.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361247)	promoter-TSS (NM_001361247)	-84.0	NM_001361247	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	73.79	61.28	48.1	95.81	79.77	81.99	62.31	44.22	26.23
Merged-chr2-91508615-3	chr2	91508108	91509108	+	963.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 37 of 38)	exon (NM_172668, exon 37 of 38)	-18154.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	25.17	24.42	13.87	29.69	25.66	35.37	52.81	65.0	55.58
Merged-chr10-43752253-3	chr10	43751756	43752756	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	6098.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	32.04	30.41	29.6	30.36	22.86	29.74	53.87	55.27	26.85
Merged-chr11-63060119-3	chr11	63059622	63060622	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1537.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	14.87	9.68	10.17	14.17	11.66	14.47	23.24	15.92	13.74
Merged-chr13-35950022-3	chr13	35949510	35950510	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-17896.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	13.73	11.06	21.27	21.59	13.06	12.86	21.12	6.19	9.37
Merged-chr3-67515234-3	chr3	67514739	67515739	+	963.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164763, exon 1 of 6)	exon (NM_001164763, exon 1 of 6)	284.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	22.31	9.22	16.65	16.87	7.0	1.61	12.67	7.96	3.75
Merged-chr4-63277175-3	chr4	63276693	63277693	+	963.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 18 of 60)	intron (NM_025685, intron 18 of 60)	20342.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	9.72	16.59	11.1	4.05	3.73	8.04	43.3	30.07	21.23
Merged-chr15-25897758-3	chr15	25897262	25898262	+	963.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-35790.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	7.44	6.45	0.0	18.89	7.46	4.02	23.24	11.94	4.37
Merged-chr9-51963417-3	chr9	51962862	51963862	+	963.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301728, exon 1 of 4)	exon (NM_001301728, exon 1 of 4)	240.0	NM_001301728	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	30.89	16.13	11.1	26.99	22.86	17.68	21.12	6.63	11.24
Merged-chr17-64753728-3	chr17	64753222	64754222	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008549, exon 22 of 22)	3' UTR (NM_008549, exon 22 of 22)	-13389.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	130.43	170.95	116.54	160.58	161.88	135.04	129.91	183.06	96.8
Merged-chr1-174038701-3	chr1	174038218	174039218	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3215.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	6.29	12.9	11.1	30.36	24.26	49.03	43.3	26.97	16.24
Merged-chr16-22461194-3	chr16	22460694	22461694	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21624.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	6.86	4.61	3.7	7.42	6.53	2.41	2.11	4.42	1.25
Merged-chr1-20497753-1	chr1	20497253	20498253	+	963.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	(CTG)n|Simple_repeat|Simple_repeat	120304.0	NM_153179	241035.0	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	2.29	3.69	5.55	8.1	3.73	25.72	7.39	3.98	5.0
Merged-chr7-141268598-3	chr7	141268100	141269100	+	963.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028069)	TTS (NM_028069)	-2176.0	NM_001252600	54123.0	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	163.04	159.89	139.67	125.5	111.96	132.63	153.15	223.29	108.67
Merged-chr4-156108496-3	chr4	156108064	156109064	+	963.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(C)n|Simple_repeat|Simple_repeat	-1434.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	56.06	46.54	49.95	33.74	33.59	58.68	83.44	68.09	69.32
Merged-chr14-34312693-3	chr14	34312184	34313184	+	963.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	1957.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	51.48	75.11	41.62	39.13	43.39	30.54	70.76	80.03	34.97
Merged-chr5-148489086-3	chr5	148488575	148489575	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	62598.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	106.4	88.47	70.3	106.61	96.57	78.77	71.82	96.39	60.58
Merged-chr9-57466315-3	chr9	57465807	57466807	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	1753.0	NM_001301634	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	23.45	31.33	26.82	39.81	21.93	31.35	28.52	31.39	29.35
Merged-chr9-111033942-3	chr9	111033406	111034406	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 13 of 16)	RSINE1|SINE|B4	14614.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	33.75	39.63	38.85	38.46	27.99	57.87	24.29	36.7	26.23
Merged-chr18-35027298-3	chr18	35026798	35027798	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72947.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	25.74	10.6	12.95	8.77	5.6	5.63	4.22	0.88	1.25
Merged-chr17-25016859-3	chr17	25016350	25017350	+	963.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134126, exon 1 of 30)	5' UTR (NM_134126, exon 1 of 30)	764.0	NM_134126	106633.0	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	224.25	189.84	136.89	196.34	167.94	180.85	129.91	188.81	112.42
Merged-chr4-119738817-3	chr4	119738327	119739327	+	963.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75851.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	29.17	20.27	26.82	16.87	17.73	21.7	23.24	14.59	9.99
Merged-chr11-95859700-2	chr11	95859176	95860176	+	963.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045187, intron 1 of 1)	CpG	859.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	144.16	138.7	145.22	186.9	182.87	156.74	178.5	229.04	79.94
Merged-chr13-109406523-1	chr13	109406023	109407023	+	963.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	81779.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	8.01	2.3	1.85	0.67	5.13	3.22	1.06	1.33	4.37
Merged-chr2-57115175-6	chr2	57114670	57115670	+	963.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013613)	promoter-TSS (NM_013613)	-132.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	17.73	3.69	1.85	19.57	9.33	6.43	29.57	11.05	6.25
Merged-chr2-30591080-3	chr2	30590553	30591553	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-3991.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	13.16	9.22	15.72	15.52	6.53	8.04	7.39	14.59	6.87
Merged-chr17-31291092-3	chr17	31290564	31291564	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	21.74	21.66	30.52	37.11	25.66	53.85	31.69	27.41	17.49
Merged-chr15-62166036-3	chr15	62165525	62166525	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	53426.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	54.35	58.98	46.25	68.15	48.52	52.25	74.99	73.84	21.23
Merged-chr2-128342454-3	chr2	128341950	128342950	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	86901.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	40.04	26.26	38.85	41.83	30.32	24.92	28.52	42.89	21.86
Merged-chr4-32343426-3	chr4	32342917	32343917	+	963.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74018.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	76.08	60.82	55.5	113.35	72.31	95.65	7.39	15.03	14.36
Merged-chr7-93013453-3	chr7	93012967	93013967	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-66412.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	6.86	2.76	1.85	11.47	1.4	12.86	8.45	3.1	1.25
Merged-chr12-25165846-3	chr12	25165353	25166353	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36679.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.01	7.37	1.85	12.82	7.46	7.23	16.9	8.4	5.0
Merged-chr4-123562559-3	chr4	123562015	123563015	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-53905.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	109.83	85.25	72.15	91.76	69.98	69.13	127.8	118.06	79.32
Merged-chr2-69635887-3	chr2	69635354	69636354	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-11401.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	5.72	10.6	5.55	13.49	7.46	5.63	21.12	19.01	10.62
Merged-chr19-3923021-3	chr19	3922552	3923552	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6664.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	63.5	33.64	20.35	52.63	20.53	31.35	28.52	35.82	19.98
Merged-chr6-46144695-3	chr6	46144198	46145198	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	1084637.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	14.87	12.9	11.1	10.8	8.86	12.06	8.45	5.75	7.49
Merged-chr3-116598174-3	chr3	116597677	116598677	+	963.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	3219.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	36.61	35.02	21.27	29.01	29.39	35.37	36.97	44.22	15.61
Merged-chr19-16404576-2	chr19	16404069	16405069	+	963.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-31098.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	3.43	4.61	7.4	27.66	17.26	17.68	73.93	57.48	26.85
Merged-chr15-59501664-3	chr15	59501153	59502153	+	963.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	127455.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	20.59	21.2	22.2	14.17	18.19	17.68	12.67	24.32	18.11
Merged-chr17-33940503-4	chr17	33940052	33941052	+	963.630981	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020603)	promoter-TSS (NM_020603)	-171.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	93.24	88.47	83.25	89.06	71.38	85.2	87.66	98.16	78.69
Merged-chr12-85389295-3	chr12	85388774	85389774	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14557.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	58.92	70.5	74.92	57.35	59.71	77.97	77.1	82.69	31.85
Merged-chr6-31184694-3	chr6	31184197	31185197	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	33777.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	69.79	61.28	31.45	73.54	53.65	40.19	31.69	29.18	23.11
Merged-chr12-85177287-3	chr12	85176764	85177764	+	963.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008827)	promoter-TSS (NM_008827)	49.0	NM_008827	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	4.0	3.23	0.0	6.75	3.73	7.23	6.34	5.31	3.75
Merged-chr14-26441621-3	chr14	26441120	26442120	+	963.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 14 of 22)	intron (NM_001310445, intron 14 of 22)	84073.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	130.43	177.86	57.35	168.0	193.13	104.49	174.27	211.36	84.31
Merged-chr3-100993854-3	chr3	100993354	100994354	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167906, exon 9 of 9)	exon (NM_001167906, exon 9 of 9)	-24191.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	70.93	71.88	49.02	85.01	88.64	84.4	80.27	98.6	64.95
Merged-chr6-125351531-3	chr6	125351046	125352046	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	1823.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	219.67	210.12	132.27	181.5	148.35	157.54	297.84	377.61	209.22
Merged-chr5-86130022-3	chr5	86129528	86130528	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172712, intron 23 of 32)	intron (NM_172712, intron 23 of 32)	42715.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	16.02	17.97	27.75	6.07	20.99	22.51	23.24	24.76	34.97
Merged-chr17-35202585-3	chr17	35202081	35203081	+	963.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001278601)	promoter-TSS (NM_001278601)	-574.0	NM_001278601	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	100.11	35.94	55.5	89.06	21.93	38.58	64.43	26.97	36.85
Merged-chr2-83994134-3	chr2	83993629	83994629	+	963.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52903.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	13.16	11.52	11.1	9.45	7.93	9.65	8.45	11.05	2.5
Merged-chr17-18558944-2	chr17	18558437	18559437	+	963.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-22790.0	NM_001104547	433070.0	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	1.14	1.38	1.85	7.42	3.27	6.43	7.39	3.1	1.25
Merged-chr2-136485947-2	chr2	136485441	136486441	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46380.0	NM_175667	319196.0	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	6.86	6.45	1.85	12.82	3.27	1.61	1.06	0.44	6.25
Merged-chr11-58211139-3	chr11	58210620	58211620	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3857.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	90.96	74.65	70.3	87.04	57.85	100.47	31.69	19.01	19.36
Merged-chr19-56699893-2	chr19	56699393	56700393	+	963.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22479.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	7.44	5.07	5.55	7.42	11.2	9.65	9.51	8.4	3.75
Merged-chr2-50982899-3	chr2	50982399	50983399	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73215.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	20.02	33.64	17.57	21.59	23.33	22.51	19.01	18.57	14.99
Merged-chr19-5725264-3	chr19	5724792	5725792	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 1 of 17)	intron (NM_001114595, intron 1 of 17)	1025.0	NM_001114595	114601.0	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	187.06	180.17	169.27	141.02	139.02	140.66	198.56	197.21	134.9
Merged-chr2-152736935-2	chr2	152736434	152737434	+	963.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355113, intron 1 of 1)	CpG	683.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	156.74	159.43	121.17	109.98	116.63	98.06	113.01	106.12	93.68
Merged-chr7-105810029-3	chr7	105809552	105810552	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025301, exon 3 of 3)	exon (NM_025301, exon 3 of 3)	1035.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	107.55	88.93	61.97	79.62	76.51	78.77	84.49	81.8	52.46
Merged-chr2-131235102-3	chr2	131234611	131235611	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144888, intron 1 of 6)	intron (NM_144888, intron 1 of 6)	1048.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	65.79	84.78	62.9	80.97	99.37	61.09	46.47	96.39	38.1
Merged-chr11-113747352-3	chr11	113746876	113747876	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	3784.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	96.68	93.54	58.27	72.19	60.65	63.5	64.43	81.8	58.71
Merged-chr11-98754894-3	chr11	98754402	98755402	+	963.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 2 of 8)	intron (NM_178060, intron 2 of 8)	13117.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	97.82	58.98	61.97	95.81	73.71	90.83	114.07	116.73	93.05
Merged-chr2-181274937-3	chr2	181274439	181275439	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	MTEb|LTR|ERVL-MaLR	13027.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	77.8	73.73	65.67	205.11	180.07	193.71	239.75	307.31	145.51
Merged-chr3-103852716-3	chr3	103852223	103853223	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-7072.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	16.59	26.26	17.57	7.42	7.93	4.82	33.8	27.41	20.61
Merged-chr14-33303564-3	chr14	33303034	33304034	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	86711.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.58	5.07	6.47	8.1	2.8	8.04	4.22	2.21	8.12
Merged-chr10-20666778-3	chr10	20666269	20667269	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	58309.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	24.03	34.1	30.52	26.99	27.06	33.76	13.73	24.76	14.99
Merged-chr3-88621800-3	chr3	88621311	88622311	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	417.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	113.27	130.86	127.64	117.4	88.64	135.84	144.7	128.23	139.27
Merged-chr7-80064450-3	chr7	80063922	80064922	+	963.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	10835.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	97.25	84.78	74.0	85.01	73.24	86.81	63.37	51.29	34.97
Merged-chr11-8847843-2	chr11	8847321	8848321	+	963.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163370.0	NM_001303610	15574.0	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	6.29	3.69	5.55	10.12	9.33	15.27	14.79	1.77	6.25
Merged-chr18-54985852-3	chr18	54985366	54986366	+	963.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	4314.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	92.1	83.4	32.37	92.44	64.38	45.01	33.8	44.22	28.1
Merged-chr5-123620971-3	chr5	123620462	123621462	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 12 of 18)	MTA_Mm|LTR|ERVL-MaLR	-47947.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	17.73	15.67	22.2	25.64	15.86	9.65	41.19	52.62	43.09
Merged-chr2-102744124-3	chr2	102743634	102744634	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2626.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	42.9	33.18	17.57	33.06	20.06	25.72	23.24	11.94	28.1
Merged-chr4-135236868-3	chr4	135236349	135237349	+	963.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 2 of 5)	intron (NM_013885, intron 2 of 5)	35911.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	108.69	73.73	35.15	84.34	63.45	45.01	52.81	70.3	31.85
Merged-chr11-54437489-3	chr11	54436992	54437992	+	963.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-687.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	184.77	201.82	123.94	190.95	175.87	128.61	160.54	184.83	93.05
Merged-chr9-32672480-4	chr9	32671901	32672901	+	963.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23641.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	58.92	44.7	63.82	74.89	53.18	68.32	73.93	61.02	40.59
Merged-chr1-181232812-2	chr1	181232314	181233314	+	963.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20836.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	105.26	107.82	91.57	123.47	115.69	132.63	110.9	107.45	67.45
Merged-chr2-165321717-3	chr2	165321221	165322221	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302752)	promoter-TSS (NM_001302752)	-895.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	176.76	109.21	165.57	161.93	94.23	147.9	211.24	218.87	109.92
Merged-chr12-91778623-1	chr12	91778123	91779123	+	963.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	CpG	7813.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	90.38	74.65	92.5	99.86	93.77	98.87	101.39	75.61	62.45
Merged-chr12-17000083-3	chr12	16999550	17000550	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	68.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	8.58	5.99	1.85	12.14	7.93	20.9	7.39	1.77	2.5
Merged-chr7-81155166-3	chr7	81154666	81155666	+	963.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 11 of 17)	intron (NM_001004184, intron 11 of 17)	40367.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	12.01	9.68	7.4	12.14	4.2	0.0	9.51	5.75	5.0
Merged-chr8-10831033-3	chr8	10830520	10831520	+	963.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51434.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	33.18	11.98	19.42	23.62	9.8	11.25	19.01	6.19	10.62
Merged-chr9-66907728-2	chr9	66907232	66908232	+	963.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	11973.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	70.93	111.05	75.85	87.71	106.83	113.33	74.99	80.47	48.71
Merged-chr5-96161635-3	chr5	96161112	96162112	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285511)	promoter-TSS (NM_001285511)	-65.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	183.06	128.1	173.89	197.02	153.95	182.46	186.94	114.08	85.56
Merged-chr11-116319202-3	chr11	116318682	116319682	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12432.0	NM_001347636	53413.0	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	16.59	7.37	7.4	18.89	8.4	6.43	10.56	12.38	2.5
Merged-chr19-12592105-3	chr19	12591584	12592584	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	4482.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	9.72	10.6	4.62	9.45	4.2	7.23	15.84	7.96	7.49
Merged-chr11-74988290-3	chr11	74987778	74988778	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 9 of 18)	intron (NM_001002764, intron 9 of 18)	62406.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	60.64	58.06	51.8	56.68	32.19	73.95	83.44	77.82	48.09
Merged-chr3-116836164-3	chr3	116835643	116836643	+	963.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23424.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	4.0	5.07	6.47	12.82	2.8	4.82	4.22	2.21	5.0
Merged-chr11-83753729-3	chr11	83753231	83754231	+	963.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145432)	promoter-TSS (NM_145432)	94.0	NM_145432	217026.0	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	42.33	30.87	33.3	52.63	41.52	49.03	64.43	38.91	24.98
Merged-chr13-112443352-3	chr13	112442851	112443851	+	963.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20719.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	25.17	23.04	18.5	39.81	20.53	20.9	24.29	22.11	18.11
Merged-chr5-138997679-3	chr5	138997164	138998164	+	963.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2711.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	108.69	44.7	14.8	103.91	42.92	13.66	62.31	48.2	28.73
Merged-chr12-29696869-2	chr12	29696380	29697380	+	963.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-10435.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	10.3	21.2	17.57	22.27	22.39	9.65	28.52	13.27	19.98
Merged-chr1-153796236-2	chr1	153795726	153796726	+	963.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 15 of 20)	intron (NM_001243223, intron 15 of 20)	46800.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	18.31	7.83	2.77	18.89	7.93	5.63	6.34	1.77	5.0
Merged-chr5-33270774-2	chr5	33270269	33271269	+	963.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	4235.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	12.01	5.07	14.8	6.07	2.33	4.82	0.0	5.31	6.87
Merged-chr6-143074181-3	chr6	143073695	143074695	+	963.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362117, intron 7 of 26)	intron (NM_001362117, intron 7 of 26)	25957.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	62.93	64.51	35.15	68.82	53.18	45.82	65.48	62.35	40.59
Merged-chr11-74896583-3	chr11	74896116	74897116	+	963.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197943, intron 1 of 22)	CpG	464.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	44.05	16.59	12.95	52.63	22.39	23.31	19.01	17.69	14.99
Merged-chr8-70541159-3	chr8	70540653	70541653	+	963.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	1478.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	66.93	69.12	49.95	107.95	77.44	55.46	58.09	74.28	44.34
Merged-chr2-152081978-3	chr2	152081464	152082464	+	963.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001160410, exon 1 of 2)	5' UTR (NM_001160410, exon 1 of 2)	435.0	NM_001160410	545474.0	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	4.58	1.84	0.0	0.67	0.93	0.8	2.11	1.33	0.0
Merged-chr18-61074814-3	chr18	61074334	61075334	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 14 of 22)	Charlie15b|DNA|hAT-Charlie	29684.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	23.45	16.13	19.42	25.64	10.26	14.47	100.34	76.49	99.3
Merged-chr7-110615394-3	chr7	110614896	110615896	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177324)	promoter-TSS (NM_177324)	-476.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	208.8	182.01	162.79	190.27	112.9	173.62	193.28	204.72	147.39
Merged-chr6-97826875-3	chr6	97826372	97827372	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	19814.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	56.06	62.67	50.87	80.29	50.38	57.87	60.2	52.18	76.82
Merged-chr2-130496394-1	chr2	130495894	130496894	+	963.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	46116.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	4.0	4.15	3.7	20.92	14.93	15.27	8.45	4.42	3.75
Merged-chr5-65357155-2	chr5	65356659	65357659	+	963.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031180, intron 1 of 4)	Charlie21a|DNA|hAT-Charlie	8748.0	NM_031180	83379.0	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	4.58	7.83	7.4	5.4	10.26	4.82	3.17	8.4	6.25
Merged-chr1-37605878-3	chr1	37605373	37606373	+	963.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-64857.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	14.3	11.98	12.95	7.42	6.53	14.47	10.56	11.05	9.99
Merged-chr4-88805968-2	chr4	88805484	88806484	+	963.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243155).3	promoter-TSS (NM_001243155).3	-42.0	NM_001243165	545647.0	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	-	predicted gene 13289	protein-coding	8.01	4.15	0.0	0.0	0.0	0.0	7.39	3.98	0.0
Merged-chr17-26513310-2	chr17	26512808	26513808	+	963.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4836.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	15.45	12.9	20.35	56.0	60.65	57.07	29.57	28.3	28.73
Merged-chr1-153749812-2	chr1	153749299	153750299	+	963.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011882, intron 1 of 8)	intron (NM_011882, intron 1 of 8)	373.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	137.29	122.11	51.8	122.12	111.5	65.11	68.65	77.38	38.72
Merged-chr13-52982906-3	chr13	52982404	52983404	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1865.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	4.58	5.07	1.85	6.75	3.73	8.04	12.67	2.21	2.5
Merged-chr17-67384789-3	chr17	67384289	67385289	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-30298.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	10.3	6.45	9.25	5.4	9.8	8.84	15.84	6.19	7.49
Merged-chr13-42574361-3	chr13	42573857	42574857	+	963.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106442.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	9.72	5.07	3.7	7.42	5.6	4.82	8.45	3.54	5.0
Merged-chr6-89043082-2	chr6	89042581	89043581	+	963.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53029.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	12.01	10.14	0.0	12.14	5.13	4.82	1.06	2.65	2.5
Merged-chr13-93179746-2	chr13	93179235	93180235	+	963.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154997, intron 4 of 15)	intron (NR_154997, intron 4 of 15)	12682.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	46.34	37.32	35.15	24.96	36.85	30.54	59.15	51.29	24.36
Merged-chr3-78919657-3	chr3	78919173	78920173	+	963.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225214.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	4.0	2.76	0.0	9.45	8.4	4.82	5.28	1.77	0.62
Merged-chr10-96331318-3	chr10	96330824	96331824	+	963.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5B|DNA|hAT-Charlie	105117.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	72.65	64.05	52.72	74.22	36.85	76.36	42.25	43.33	39.97
Merged-chr8-120319644-3	chr8	120319157	120320157	+	963.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91427.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	3.43	2.76	2.77	5.4	2.33	2.41	4.22	2.21	2.5
Merged-chr12-79626866-3	chr12	79626383	79627383	+	963.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297850.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	109.83	111.97	86.02	132.92	69.98	103.69	92.94	124.69	80.56
Merged-chr3-26866801-2	chr3	26866314	26867314	+	963.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029150, intron 5 of 10)	RMER19B|LTR|ERVK	229183.0	NM_027583	70862.0	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	2.29	2.76	7.4	7.42	10.73	14.47	10.56	5.75	11.24
Merged-chr12-84854726-1	chr12	84854226	84855226	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013589, intron 2 of 34)	URR1B|DNA|hAT-Charlie	-21076.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	22.31	24.42	24.05	28.34	32.19	53.85	23.24	13.71	21.23
Merged-chr5-138195149-3	chr5	138194648	138195648	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177878, exon 1 of 1)	exon (NM_177878, exon 1 of 1)	834.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	225.39	229.93	208.11	241.55	201.07	220.24	247.15	288.74	157.38
Merged-chr14-65837420-3	chr14	65836952	65837952	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145944, exon 1 of 9)	5' UTR (NM_145944, exon 1 of 9)	150.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	114.41	106.44	65.67	87.04	74.64	86.01	108.79	100.37	54.33
Merged-chr2-174041710-3	chr2	174041200	174042200	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-35351.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	8.01	11.52	30.52	8.77	12.13	11.25	8.45	9.73	13.74
Merged-chr7-30091405-1	chr7	30090905	30091905	+	963.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-895.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	16.59	20.27	14.8	18.22	13.06	36.97	23.24	46.43	28.1
Merged-chrX-169863014-3	chrX	169862514	169863514	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-16605.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	5.72	9.22	3.7	14.17	8.4	11.25	9.51	13.71	7.49
Merged-chr9-88709688-2	chr9	88709187	88710187	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	9900.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	163.04	220.72	126.72	230.08	208.06	140.66	171.1	233.91	116.16
Merged-chr13-97442500-3	chr13	97442003	97443003	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	7533.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	65.21	52.07	45.32	24.29	15.39	30.54	53.87	48.64	15.61
Merged-chr7-28175553-3	chr7	28175045	28176045	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007991, intron 4 of 8)	intron (NM_007991, intron 4 of 8)	-3938.0	NM_001037957	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	36.61	34.56	38.85	24.29	34.99	39.39	32.74	25.65	18.74
Merged-chr3-8667972-3	chr3	8667456	8668456	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010423)	promoter-TSS (NM_010423)	-918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	137.86	184.77	166.49	152.49	191.27	176.83	121.46	129.11	92.43
Merged-chr10-116512725-1	chr10	116512225	116513225	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	15224.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	9.72	13.36	7.4	11.47	14.93	4.02	9.51	7.52	15.61
Merged-chr5-124477324-3	chr5	124476804	124477804	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	B3|SINE|B2	931.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	243.69	214.73	156.32	184.87	120.36	90.83	174.27	219.31	138.65
Merged-chr13-69538483-3	chr13	69537979	69538979	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4615.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	29.17	33.18	23.12	44.53	28.92	49.03	13.73	7.07	5.0
Merged-chr13-43549970-3	chr13	43549462	43550462	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 4 of 8)	intron (NM_001081059, intron 4 of 8)	10229.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	126.42	109.67	111.92	118.75	95.17	114.94	102.45	99.93	59.33
Merged-chr13-45144103-1	chr13	45143603	45144603	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-142007.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.15	4.15	0.0	6.75	2.33	8.04	6.34	7.52	5.0
Merged-chr17-28247822-3	chr17	28247323	28248323	+	963.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	15069.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	10.87	3.23	9.25	18.22	7.93	20.9	19.01	19.46	3.12
Merged-chr6-34709481-2	chr6	34708990	34709990	+	963.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145575)	promoter-TSS (NM_145575)	46.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	2.29	3.69	0.92	10.12	3.27	6.43	10.56	1.33	18.11
Merged-chr8-70696712-3	chr8	70696233	70697233	+	962.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1006.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	118.99	88.47	74.92	87.04	50.38	49.03	89.78	93.74	63.08
Merged-chr2-170131266-4	chr2	170130770	170131770	+	962.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033299)	promoter-TSS (NM_001033299)	-50.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	179.62	101.83	118.39	147.76	72.78	110.92	166.88	108.77	93.68
Merged-chr8-10910665-3	chr8	10910170	10911170	+	962.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10748.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	54.35	42.39	40.7	52.63	41.52	23.31	16.9	18.57	25.61
Merged-chr17-5978540-5	chr17	5978009	5979009	+	962.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	2923.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	32.04	25.8	13.87	37.11	24.26	21.7	33.8	22.55	13.74
Merged-chr9-104262406-2	chr9	104261916	104262916	+	962.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	CpG	514.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	211.09	192.15	227.54	203.09	209.93	218.63	290.45	271.93	156.13
Merged-chr11-6519812-3	chr11	6519314	6520314	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178440, intron 1 of 21)	intron (NM_178440, intron 1 of 21)	1144.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	49.2	51.61	59.2	34.41	42.92	69.13	59.15	63.67	33.72
Merged-chr13-21549699-3	chr13	21549215	21550215	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	6305.0	NM_207572	404335.0	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding	3.43	5.53	5.55	5.4	4.67	3.22	15.84	8.84	8.74
Merged-chr8-27176961-3	chr8	27176437	27177437	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2291.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	9.72	6.45	11.1	12.14	2.33	4.82	10.56	4.42	5.0
Merged-chr13-112396757-3	chr13	112396241	112397241	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67329.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	85.24	69.12	42.55	74.22	28.46	29.74	46.47	42.01	46.84
Merged-chr1-57392703-3	chr1	57392208	57393208	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13840.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	36.04	25.34	37.0	22.94	26.12	49.83	30.63	27.86	53.08
Merged-chr14-84443456-3	chr14	84442955	84443955	+	962.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-108.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	4.0	2.3	0.0	2.7	2.33	4.02	4.22	1.33	0.0
Merged-chr10-82923697-3	chr10	82923208	82924208	+	962.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	57082.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	3.43	5.53	11.1	6.07	7.93	6.43	2.11	4.42	5.0
Merged-chr15-64095413-3	chr15	64094892	64095892	+	962.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-34944.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	21.74	17.97	23.12	24.29	23.33	26.53	44.36	32.72	11.87
Merged-chr1-180826813-3	chr1	180826350	180827350	+	962.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-13245.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	20.59	18.43	31.45	18.89	23.33	28.13	38.02	25.65	20.61
Merged-chr13-41469727-2	chr13	41469219	41470219	+	962.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17641.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.72	19.81	9.25	29.69	28.92	17.68	22.18	15.48	20.61
Merged-chr2-52287610-2	chr2	52287109	52288109	+	962.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 36 of 156)	intron (NM_010889, intron 36 of 156)	-3393.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.57	1.38	1.85	23.62	12.13	22.51	28.52	13.27	14.99
Merged-chr16-49929534-3	chr16	49929021	49930021	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-26309.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	24.6	15.21	7.4	38.46	22.39	19.29	41.19	30.51	21.23
Merged-chr3-105840017-3	chr3	105839510	105840510	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24443.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	42.33	35.02	48.1	51.95	30.79	26.53	28.52	35.82	24.98
Merged-chr10-76352115-3	chr10	76351610	76352610	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008787, intron 41 of 41)	ORR1E|LTR|ERVL-MaLR	-6819.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	14.3	8.75	24.05	14.17	17.26	33.76	22.18	11.94	34.35
Merged-chr2-129413796-3	chr2	129413308	129414308	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42669.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	21.74	8.29	9.25	62.75	34.99	53.85	19.01	18.13	14.99
Merged-chr18-39026602-1	chr18	39026102	39027102	+	962.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	33457.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.58	1.84	5.55	2.02	4.2	10.45	3.17	2.21	1.25
Merged-chr14-74848330-3	chr14	74847834	74848834	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	intron (NM_001033439, intron 2 of 19)	99543.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	36.61	34.56	33.3	33.74	28.46	38.58	34.85	30.51	38.72
Merged-chr3-115716398-3	chr3	115715903	115716903	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1348.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	7.44	4.61	3.7	8.77	6.53	10.45	8.45	6.63	6.87
Merged-chr17-87397296-3	chr17	87396718	87397718	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029298, intron 5 of 6)	MLT1J|LTR|ERVL-MaLR	30523.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	4.0	3.23	5.55	6.75	6.06	8.04	3.17	3.54	7.49
Merged-chr19-46002445-3	chr19	46001947	46002947	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152221, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	-1031.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	30.89	41.47	20.35	30.36	27.99	37.78	23.24	24.32	18.11
Merged-chr4-43466125-3	chr4	43465623	43466623	+	962.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11497.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	72.08	66.81	72.15	153.84	130.16	107.71	125.69	121.15	60.58
Merged-chr13-12058643-3	chr13	12058093	12059093	+	962.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	48352.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	16.59	11.52	7.4	27.66	14.46	24.92	16.9	12.38	13.74
Merged-chr6-113285174-3	chr6	113284706	113285706	+	962.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170673, intron 6 of 19)	intron (NM_170673, intron 6 of 19)	2899.0	NM_170673	211232.0	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	12.59	9.22	18.5	12.14	10.73	20.9	14.79	11.94	13.74
Merged-chr17-26437655-3	chr17	26437137	26438137	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22672.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	34.9	26.73	8.32	43.18	39.65	47.42	124.63	160.95	96.18
Merged-chr3-132744877-3	chr3	132744363	132745363	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 20 of 25)	intron (NM_001163455, intron 20 of 25)	60719.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	29.17	34.1	40.7	38.46	29.39	49.83	31.69	30.95	22.48
Merged-chr7-84551661-3	chr7	84551159	84552159	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	22705.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	14.3	17.97	2.77	24.29	39.19	19.29	29.57	35.37	22.48
Merged-chr3-95658169-3	chr3	95657658	95658658	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008562)	promoter-TSS (NM_008562)	-563.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	243.12	247.44	173.89	230.75	157.21	163.17	257.71	294.48	167.37
Merged-chr12-8327007-3	chr12	8326495	8327495	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 4 of 6)	intron (NM_021429, intron 4 of 6)	13562.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	9.15	5.99	0.0	7.42	3.73	4.82	7.39	1.77	5.0
Merged-chr11-117727324-3	chr11	117726821	117727821	+	962.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	52327.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	21.74	33.18	24.97	29.01	27.99	16.08	38.02	38.03	27.48
Merged-chr3-146157025-3	chr3	146156543	146157543	+	962.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	6869.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	144.73	130.4	75.85	124.15	82.11	109.32	111.96	130.0	42.47
Merged-chr11-46774845-3	chr11	46774350	46775350	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	23682.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	14.87	11.98	1.85	19.57	18.66	14.47	17.96	6.19	13.74
Merged-chr2-11394852-3	chr2	11394342	11395342	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	intron (NR_040615, intron 1 of 2)	3658.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	25.74	32.72	46.25	39.81	42.45	42.6	65.48	40.24	40.59
Merged-chr18-80163914-3	chr18	80163407	80164407	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12425.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	12.59	14.28	18.5	15.52	11.2	11.25	12.67	12.82	12.49
Merged-chr13-103921581-3	chr13	103921089	103922089	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1003.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	73.22	70.96	75.85	92.44	66.24	91.63	85.55	56.6	48.71
Merged-chr5-139830852-3	chr5	139830355	139831355	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3961.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	6.86	10.6	15.72	12.82	8.86	22.51	9.51	7.07	9.99
Merged-chr11-46312378-3	chr11	46311863	46312863	+	962.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252460)	promoter-TSS (NM_001252460)	-5.0	NM_133769	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	17.73	11.98	10.17	22.94	24.26	9.65	26.4	13.71	8.74
Merged-chrX-73717975-3	chrX	73717464	73718464	+	962.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313698)	promoter-TSS (NM_001313698)	-149.0	NM_001313698	27061.0	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	128.71	147.91	123.02	97.83	116.16	116.55	132.02	137.07	88.06
Merged-chr13-43481288-5	chr13	43480772	43481772	+	962.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019930)	promoter-TSS (NM_019930)	-299.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	168.18	147.91	156.32	161.26	124.09	130.21	170.05	132.65	113.04
Merged-chr14-19968905-3	chr14	19968405	19969405	+	962.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	B1F|SINE|Alu	7788.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	133.86	178.32	109.14	132.24	122.69	109.32	153.15	139.28	91.81
Merged-chr13-60736648-3	chr13	60736153	60737153	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 18 of 26)	intron (NM_134062, intron 18 of 26)	49711.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	40.62	59.44	59.2	76.92	45.72	87.61	65.48	48.2	50.59
Merged-chr1-152832523-3	chr1	152832011	152833011	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 11 of 15)	RSINE1|SINE|B4	32358.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	24.03	13.36	25.9	33.74	10.73	25.72	21.12	28.74	13.74
Merged-chr2-116900081-3	chr2	116899592	116900592	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040335)	promoter-TSS (NR_040335)	-60.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	44.62	35.02	37.92	45.21	28.92	20.9	42.25	31.84	23.11
Merged-chr18-9538799-3	chr18	9538309	9539309	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80660.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	50.34	40.09	27.75	55.33	46.18	28.13	55.98	43.33	30.6
Merged-chr2-173783913-3	chr2	173783391	173784391	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019806, exon 6 of 6)	3' UTR (NM_019806, exon 6 of 6)	46320.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	41.19	42.85	40.7	53.98	76.97	80.38	62.31	45.54	23.11
Merged-chr5-148886045-3	chr5	148885531	148886531	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153572, intron 9 of 10)	intron (NM_153572, intron 9 of 10)	42616.0	NM_153572	231912.0	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	6.29	4.15	5.55	4.72	3.73	7.23	17.96	8.84	9.99
Merged-chr4-24617521-3	chr4	24617018	24618018	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033531, exon 10 of 10)	exon (NM_001033531, exon 10 of 10)	121067.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	14.3	17.51	8.32	16.87	18.66	16.88	15.84	8.4	9.99
Merged-chr4-132563497-3	chr4	132563015	132564015	+	962.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081211)	promoter-TSS (NM_001081211)	-552.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	68.65	29.49	29.6	95.81	46.18	65.91	46.47	36.7	14.36
Merged-chr5-24025157-1	chr5	24024657	24025657	+	962.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053090, intron 1 of 10)	intron (NM_053090, intron 1 of 10)	5155.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	4.58	2.76	3.7	30.36	20.06	35.37	4.22	4.42	2.5
Merged-chr6-17408292-2	chr6	17407786	17408786	+	962.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55671.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.58	3.69	5.55	4.72	4.67	8.84	12.67	11.5	7.49
Merged-chr5-17999861-2	chr5	17999368	18000368	+	962.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 4 of 7)	intron (NM_001081143, intron 4 of 7)	37298.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	68.65	80.18	22.2	71.52	78.84	39.39	44.36	51.73	52.46
Merged-chr2-155764133-2	chr2	155763626	155764626	+	962.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11216.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	17.16	15.67	26.82	19.57	10.26	22.51	34.85	30.95	17.49
Merged-chr9-41122500-3	chr9	41122007	41123007	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	ID4|SINE|ID	35555.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	71.51	56.68	49.02	43.86	53.65	65.91	47.53	47.31	39.97
Merged-chr1-161076446-3	chr1	161075894	161076894	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131030, intron 2 of 4)	B1F2|SINE|Alu	5627.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	128.14	150.22	74.0	95.81	96.57	77.97	188.0	199.42	81.81
Merged-chr1-185203291-3	chr1	185202796	185203796	+	962.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163754)	promoter-TSS (NM_001163754)	-872.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	78.94	94.92	42.55	102.56	138.09	86.01	230.25	320.57	145.51
Merged-chr11-98051804-3	chr11	98051312	98052312	+	962.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146028, intron 1 of 10)	intron (NM_146028, intron 1 of 10)	1650.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	16.02	7.83	1.85	20.24	9.33	3.22	4.22	7.96	0.0
Merged-chr12-17676618-3	chr12	17676116	17677116	+	962.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14193.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	13.73	26.26	31.45	17.54	20.99	22.51	10.56	15.48	11.24
Merged-chr5-138229726-3	chr5	138229218	138230218	+	962.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001013773, exon 2 of 6)	5' UTR (NM_001013773, exon 2 of 6)	3814.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	44.62	32.72	22.2	38.46	34.99	51.44	20.07	20.78	9.99
Merged-chr17-56153911-3	chr17	56153400	56154400	+	962.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8591.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	4.58	3.69	5.55	10.12	1.4	2.41	4.22	1.33	1.25
Merged-chr7-79715820-3	chr7	79715313	79716313	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1627.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	18.88	24.42	24.05	24.96	18.66	53.05	27.46	24.76	40.59
Merged-chr5-146805192-3	chr5	146804694	146805694	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10238.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	136.72	135.01	113.77	163.96	111.96	131.02	170.05	192.78	99.3
Merged-chr16-55803111-3	chr16	55802609	55803609	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19029.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	61.21	57.14	52.72	87.71	66.71	77.97	60.2	69.42	43.72
Merged-chr16-76224231-3	chr16	76223678	76224678	+	962.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	101565.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	164.18	132.25	71.22	195.67	106.83	88.42	174.27	172.45	81.19
Merged-chr3-145653439-3	chr3	145652947	145653947	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3462.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	17.16	6.45	8.32	47.9	36.85	54.66	42.25	31.39	36.22
Merged-chr3-104701141-3	chr3	104700640	104701640	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62476.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	4.0	3.23	0.0	1.35	1.87	1.61	1.06	0.44	1.25
Merged-chrX-112371007-3	chrX	112370504	112371504	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026565, intron 8 of 8)	intron (NM_026565, intron 8 of 8)	35775.0	NM_028655	73809.0	Mm.50508	NM_028655	ENSMUSG00000025527	Satl1	4930404K22Rik	spermidine/spermine N1-acetyl transferase-like 1	protein-coding	45.19	58.06	71.22	62.75	55.98	95.65	4.22	9.73	98.68
Merged-chr6-122638774-4	chr6	122638294	122639294	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12370.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	54.35	83.4	48.1	87.04	57.85	67.52	262.99	265.74	98.68
Merged-chr11-23679431-3	chr11	23678949	23679949	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	13473.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	12.01	7.37	0.0	8.77	2.8	10.45	9.51	16.8	5.0
Merged-chr10-70201013-3	chr10	70200498	70201498	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3666.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	50.34	51.15	32.37	51.28	47.12	40.99	100.34	87.99	53.71
Merged-chr6-37223920-2	chr6	37223431	37224431	+	962.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	76045.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	90.38	76.49	58.27	74.22	88.64	93.24	49.64	92.41	54.96
Merged-chr5-3146743-3	chr5	3146216	3147216	+	962.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-197177.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	7.44	7.37	2.77	3.37	2.8	1.61	2.11	3.98	4.37
Merged-chr17-35170986-3	chr17	35170476	35171476	+	962.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361501)	TTS (NM_001361501)	5076.0	NM_019467	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	59.49	49.3	49.02	47.23	31.72	40.99	63.37	77.82	51.21
Merged-chr11-62646363-3	chr11	62645861	62646861	+	962.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1688.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	18.88	24.42	23.12	23.62	13.53	20.09	21.12	12.38	30.6
Merged-chr16-4777299-3	chr16	4776786	4777786	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358082, intron 1 of 5)	intron (NM_001358082, intron 1 of 5)	12176.0	NM_001358078	66626.0	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	24.6	20.74	14.8	39.81	30.79	9.65	27.46	15.48	19.98
Merged-chr19-44146436-3	chr19	44145942	44146942	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028607)	promoter-TSS (NM_028607)	4.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	22.88	18.43	18.5	32.39	20.99	36.17	32.74	15.92	7.49
Merged-chr6-5291715-3	chr6	5291214	5292214	+	962.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	6659.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	18.31	22.12	14.8	23.62	24.72	29.74	13.73	13.27	16.24
Merged-chr1-105780611-3	chr1	105780103	105781103	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009399)	promoter-TSS (NM_009399)	-120.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	57.78	48.38	36.07	41.83	40.59	53.85	55.98	55.71	54.96
Merged-chr12-8501072-4	chr12	8500556	8501556	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1047.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	288.32	370.93	287.66	250.99	284.1	261.23	277.78	403.26	208.59
Merged-chr2-151009296-3	chr2	151008801	151009801	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207204)	promoter-TSS (NM_207204)	97.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	3.43	1.38	9.25	6.75	2.8	8.04	3.17	4.86	6.25
Merged-chr7-16913952-3	chr7	16913441	16914441	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7451.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	4.58	3.23	1.85	4.72	4.67	11.25	3.17	0.44	6.25
Merged-chr14-14098792-3	chr14	14098287	14099287	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 10 of 11)	intron (NM_139227, intron 10 of 11)	22117.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	2.86	3.69	4.62	7.42	2.33	5.63	1.06	2.65	6.25
Merged-chr11-97026252-3	chr11	97025763	97026763	+	962.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	155.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	5.15	1.38	5.55	6.75	7.0	14.47	7.39	3.1	3.75
Merged-chr6-83053785-3	chr6	83053278	83054278	+	962.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007517)	promoter-TSS (NM_007517)	-743.0	NM_007517	11993.0	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	215.66	166.34	115.62	263.81	181.94	151.11	248.2	248.5	83.06
Merged-chr7-49272589-3	chr7	49272070	49273070	+	962.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	26381.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	7.44	5.07	0.92	8.1	0.0	4.82	0.0	2.21	2.5
Merged-chr6-16889653-3	chr6	16889176	16890176	+	962.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	8765.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	66.93	88.47	49.02	53.98	64.38	69.13	57.03	53.06	36.85
Merged-chr2-147022206-3	chr2	147021719	147022719	+	962.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	9220.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	14.3	23.5	25.9	20.24	16.79	44.21	30.63	18.57	24.36
Merged-chr3-103587867-2	chr3	103587370	103588370	+	962.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	11744.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	9.15	7.37	17.57	13.49	8.86	11.25	17.96	6.63	16.24
Merged-chr9-22130656-3	chr9	22130125	22131125	+	962.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007388)	promoter-TSS (NM_007388)	-27.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	139.58	115.66	101.74	114.03	81.64	133.43	137.3	89.32	81.19
Merged-chr1-176224037-3	chr1	176223534	176224534	+	962.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-10092.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	53.2	80.64	24.05	38.46	34.99	28.94	40.14	53.5	20.61
Merged-chr15-80634940-3	chr15	80634445	80635445	+	962.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010815, intron 2 of 6)	intron (NM_010815, intron 2 of 6)	-11128.0	NR_105922	102466773.0		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA	6.29	1.84	3.7	3.37	1.4	1.61	3.17	0.88	3.75
Merged-chr5-113225302-2	chr5	113224800	113225800	+	962.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1609.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	14.87	10.14	2.77	6.07	1.4	7.23	2.11	3.1	1.87
Merged-chr13-32913254-3	chr13	32912766	32913766	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15126.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	20.59	27.65	35.15	20.92	23.79	33.76	39.08	35.37	23.73
Merged-chr1-194672039-3	chr1	194671540	194672540	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008882, intron 3 of 31)	intron (NM_008882, intron 3 of 31)	52211.0	NM_008882	18845.0	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	2.86	2.3	1.85	17.54	12.6	24.11	6.34	4.86	3.75
Merged-chr4-149841119-3	chr4	149840621	149841621	+	962.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66854.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.57	2.76	0.0	2.7	6.06	4.02	9.51	3.54	3.75
Merged-chr8-83103204-3	chr8	83102761	83103761	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62091.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	136.15	139.62	89.72	138.32	123.62	128.61	89.78	93.3	79.94
Merged-chr5-21213977-3	chr5	21213480	21214480	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	intron (NR_153365, intron 5 of 26)	27713.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	17.16	20.74	23.12	31.04	22.86	17.68	13.73	12.82	11.24
Merged-chr11-85667721-3	chr11	85667235	85668235	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	52009.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	42.9	30.41	19.42	41.16	33.59	28.13	19.01	13.71	20.61
Merged-chr18-49521710-2	chr18	49521215	49522215	+	962.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45-int|LTR|ERVK	-1574.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	8.58	5.53	3.7	8.1	4.67	11.25	16.9	4.42	7.49
Merged-chr14-26675951-2	chr14	26675446	26676446	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6100.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	6.86	4.15	9.25	3.37	6.06	4.82	6.34	3.98	8.74
Merged-chr18-60712311-3	chr18	60711808	60712808	+	962.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	15258.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	37.18	29.03	30.52	29.01	22.39	28.94	31.69	29.18	26.23
Merged-chr10-83343378-3	chr10	83342876	83343876	+	962.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-5559.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	6.86	7.83	1.85	7.42	5.13	7.23	11.62	10.61	5.0
Merged-chr15-8995674-3	chr15	8995169	8996169	+	962.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	27720.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	52.63	58.06	29.6	39.13	35.45	18.49	40.14	23.43	21.23
Merged-chr5-100636996-3	chr5	100636473	100637473	+	962.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37283.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	82.95	122.11	92.5	89.74	92.37	106.1	148.92	204.72	88.06
Merged-chr2-129370624-7	chr2	129370176	129371176	+	962.1785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008361, intron 1 of 6)	intron (NM_008361, intron 1 of 6)	463.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	50.34	29.49	28.67	49.25	22.86	53.85	77.1	41.12	39.97
Merged-chr8-125569070-3	chr8	125568549	125569549	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	814.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	147.02	161.27	96.2	139.67	133.42	99.67	141.53	176.87	88.06
Merged-chr11-98952870-3	chr11	98952358	98953358	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-7613.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	30.32	29.49	64.75	38.46	21.93	46.62	63.37	49.52	33.1
Merged-chr15-75021534-1	chr15	75021034	75022034	+	962.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-23503.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	4.0	4.15	5.55	4.05	2.33	3.22	13.73	10.61	19.98
Merged-chr9-104574766-3	chr9	104574258	104575258	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	5275.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	14.3	14.75	4.62	23.62	17.73	26.53	3.17	1.77	3.12
Merged-chr3-52444136-3	chr3	52443640	52444640	+	962.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72824.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	18.88	19.81	27.75	13.49	16.79	14.47	26.4	17.69	11.24
Merged-chr4-155122758-1	chr4	155122258	155123258	+	962.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	36154.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	12.01	6.45	1.85	26.31	13.53	21.7	1.06	1.33	3.75
Merged-chr17-34264732-2	chr17	34264225	34265225	+	962.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 1 of 5)	CpG	1498.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	50.91	56.22	99.89	58.03	29.86	21.7	59.15	34.93	41.84
Merged-chr4-144905286-2	chr4	144904796	144905796	+	962.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12159.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	41.76	47.92	31.45	39.13	82.57	76.36	65.48	66.77	25.61
Merged-chr3-142496798-3	chr3	142496295	142497295	+	962.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153564)	promoter-TSS (NM_153564)	-139.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	99.54	150.68	78.62	96.48	100.3	77.97	116.18	99.93	65.58
Merged-chr4-129827931-3	chr4	129827428	129828428	+	962.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	7220.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	156.74	187.54	93.42	130.22	94.23	99.67	164.76	174.21	62.45
Merged-chr10-87910819-3	chr10	87910325	87911325	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	49714.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	38.9	31.79	19.42	48.58	41.05	28.13	44.36	31.39	23.73
Merged-chr11-120581121-3	chr11	120580626	120581626	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133796, intron 1 of 5)	CpG	494.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	319.78	247.44	297.84	269.89	194.53	249.98	250.32	188.81	136.15
Merged-chr1-59613998-3	chr1	59613505	59614505	+	962.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	56829.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	6.86	2.76	3.7	2.7	1.4	3.22	4.22	1.33	2.5
Merged-chr2-118520117-3	chr2	118519599	118520599	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24488.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	36.04	33.64	35.15	45.88	35.45	41.8	63.37	59.25	36.85
Merged-chr10-96379193-3	chr10	96378694	96379694	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152987.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	42.9	48.84	55.5	49.25	34.99	40.19	33.8	39.35	34.35
Merged-chr12-85256336-3	chr12	85255849	85256849	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175337, intron 5 of 11)	MER44B|DNA|TcMar-Tigger	-10364.0	NR_105903	102466769.0		NR_105903	ENSMUSG00000098263	Mir6938	Gm27519|mmu-mir-6938	microRNA 6938	ncRNA	207.08	152.52	79.55	149.11	103.56	91.63	81.33	74.28	51.84
Merged-chr13-43496795-3	chr13	43496298	43497298	+	962.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15825.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	32.04	27.19	21.27	26.99	33.12	24.92	68.65	68.98	31.85
Merged-chr18-66453563-3	chr18	66453016	66454016	+	962.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-5088.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	24.6	23.5	33.3	15.52	15.39	26.53	44.36	33.16	16.24
Merged-chr7-81862568-3	chr7	81862075	81863075	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-112.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	97.82	91.24	92.5	85.69	75.11	108.51	51.75	64.11	76.19
Merged-chr9-47708471-3	chr9	47707975	47708975	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	109733.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	30.89	36.86	25.9	44.53	37.79	37.78	36.97	32.72	25.61
Merged-chr11-95293256-3	chr11	95292768	95293768	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195003, intron 5 of 14)	intron (NM_001195003, intron 5 of 14)	16978.0	NM_001195004	217127.0	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	92.67	110.13	39.77	114.03	97.97	83.59	71.82	70.75	50.59
Merged-chr1-191438639-3	chr1	191438134	191439134	+	962.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 5 of 5)	intron (NR_151615, intron 5 of 5)	26414.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	8.01	4.61	11.1	17.54	3.73	9.65	42.25	26.97	19.98
Merged-chr3-115692578-2	chr3	115692008	115693008	+	962.0238039999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22547.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.72	4.61	1.85	11.47	12.13	7.23	22.18	6.63	14.36
Merged-chr14-48120816-1	chr14	48120316	48121316	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033602)	promoter-TSS (NM_033602)	-53.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	10.3	5.99	7.4	27.66	17.73	28.13	9.51	2.21	0.62
Merged-chr2-156258300-1	chr2	156257800	156258800	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	B1_Mur4|SINE|Alu	-54173.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	64.64	48.84	72.15	98.51	68.11	67.52	84.49	86.66	39.97
Merged-chr11-105181505-4	chr11	105181077	105182077	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	50.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	228.25	207.81	234.94	221.31	142.75	214.61	239.75	133.98	128.65
Merged-chr17-24674484-1	chr17	24673984	24674984	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	4797.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	5.15	7.83	11.1	7.42	0.93	8.84	3.17	2.21	10.62
Merged-chr11-120916656-3	chr11	120916157	120917157	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 3 of 18)	intron (NM_027745, intron 3 of 18)	16215.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	85.24	82.02	35.15	76.92	84.44	87.61	79.21	100.37	33.1
Merged-chr10-89442820-3	chr10	89442307	89443307	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1160.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	75.51	82.02	26.82	118.08	118.03	78.77	64.43	71.63	41.84
Merged-chr11-116654473-2	chr11	116653985	116654985	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030206)	promoter-TSS (NM_030206)	-172.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	14.3	5.07	7.4	10.8	5.6	4.82	3.17	3.1	3.75
Merged-chr3-7501886-1	chr3	7501386	7502386	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	2.86	3.69	4.62	4.05	3.27	6.43	2.11	2.65	1.25
Merged-chr15-11987897-1	chr15	11987397	11988397	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011294, intron 3 of 4)	RMER6B|LTR|ERVK	8110.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	62.93	64.51	50.87	2.02	2.8	12.86	4.22	6.19	0.0
Merged-chr18-42790534-1	chr18	42790034	42791034	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	108972.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	4.0	3.23	0.0	1.35	3.27	4.82	1.06	3.1	2.5
Merged-chr1-39918927-3	chr1	39918448	39919448	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	18035.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	36.04	30.41	13.87	29.01	10.73	25.72	25.35	31.39	21.23
Merged-chr19-8763530-3	chr19	8763043	8764043	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276704, exon 4 of 20)	exon (NM_001276704, exon 4 of 20)	6426.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	41.76	44.24	38.85	33.74	28.46	41.8	42.25	34.05	51.21
Merged-chr14-102828647-3	chr14	102828139	102829139	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153993.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	104.69	109.67	110.07	108.63	92.37	131.02	111.96	174.21	96.8
Merged-chr16-36827879-1	chr16	36827379	36828379	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177128)	promoter-TSS (NM_177128)	380.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	11.44	6.91	7.4	16.19	12.6	10.45	13.73	8.84	3.12
Merged-chr2-165112365-3	chr2	165111864	165112864	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_174988, exon 12 of 12)	exon (NM_174988, exon 12 of 12)	-21614.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	1.72	2.3	0.0	2.7	2.8	1.61	5.28	0.44	1.25
Merged-chr9-31841327-1	chr9	31840827	31841827	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71958.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	5.15	0.92	3.7	0.67	1.4	0.0	2.11	1.33	0.0
Merged-chr6-128355919-3	chr6	128355414	128356414	+	962.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011657)	promoter-TSS (NM_011657)	-63.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	1.14	0.46	3.7	6.07	0.47	1.61	7.39	0.88	1.25
Merged-chr12-73291869-1	chr12	73291369	73292369	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 2 of 15)	intron (NM_001037717, intron 2 of 15)	5021.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	9.72	10.14	12.95	16.19	10.26	32.96	9.51	1.33	12.49
Merged-chr10-56377295-1	chr10	56376795	56377795	+	962.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010288)	promoter-TSS (NM_010288)	-5.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	5.15	2.76	5.55	6.07	10.26	1.61	2.11	1.33	2.5
Merged-chr6-83598189-3	chr6	83597695	83598695	+	961.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25691.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	42.9	32.72	33.3	61.4	38.25	22.51	81.33	71.63	24.98
Merged-chr11-90238801-3	chr11	90238297	90239297	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10679.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	29.17	24.42	16.65	30.36	19.13	43.4	26.4	15.92	23.11
Merged-chr5-102009872-3	chr5	102009370	102010370	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172882, exon 3 of 67)	5' UTR (NM_172882, exon 3 of 67)	60051.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	75.51	91.24	55.5	101.21	75.11	73.14	100.34	105.24	49.34
Merged-chr8-40927776-3	chr8	40927273	40928273	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	1540.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	3.43	1.84	5.55	2.02	2.33	0.0	5.28	3.98	3.75
Merged-chr10-41530167-3	chr10	41529695	41530695	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016898, exon 6 of 6)	3' UTR (NM_016898, exon 6 of 6)	10695.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	76.08	93.08	53.65	60.05	40.59	51.44	55.98	79.15	41.84
Merged-chr1-92061843-3	chr1	92061346	92062346	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	118495.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	10.3	4.61	0.0	8.77	5.13	5.63	5.28	6.19	2.5
Merged-chr10-117843804-3	chr10	117843304	117844304	+	961.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	2170.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	348.38	331.76	160.94	333.31	221.59	183.26	334.81	476.66	149.89
Merged-chr12-98920566-3	chr12	98920032	98921032	+	961.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029553)	promoter-TSS (NM_029553)	-42.0	NM_029553	76260.0	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	28.6	23.96	18.5	24.96	17.26	26.53	31.69	26.97	21.23
Merged-chr8-14627141-3	chr8	14626647	14627647	+	961.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-261389.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	11.44	10.14	1.85	14.17	7.0	6.43	7.39	3.54	1.25
Merged-chr1-144301707-3	chr1	144301209	144302209	+	961.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-52605.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	13.73	15.21	1.85	22.27	14.93	10.45	21.12	8.4	5.0
Merged-chr4-9074573-2	chr4	9074055	9075055	+	961.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194738.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	14.3	7.37	25.9	18.89	22.86	10.45	39.08	20.78	16.86
Merged-chr2-84370550-3	chr2	84370054	84371054	+	961.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 6 of 15)	intron (NM_018782, intron 6 of 15)	54712.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	16.59	20.27	11.1	30.36	28.46	28.13	13.73	10.17	11.87
Merged-chr2-165987449-3	chr2	165986945	165987945	+	961.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5192.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	72.65	52.99	61.05	94.46	41.99	71.54	127.8	110.1	97.43
Merged-chr7-122945364-3	chr7	122944864	122945864	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25095.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.57	7.37	3.7	2.7	2.8	2.41	3.17	4.86	4.37
Merged-chr3-142470198-3	chr3	142469696	142470696	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26738.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	4.0	1.84	2.77	7.42	5.13	1.61	7.39	3.1	0.0
Merged-chr1-151958669-3	chr1	151958167	151959167	+	961.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	L1M3|LINE|L1	131653.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	13.73	13.36	6.47	11.47	17.73	9.65	11.62	10.17	2.5
Merged-chr3-107110431-2	chr3	107109937	107110937	+	961.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	8870.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	17.73	14.75	12.02	25.64	32.19	31.35	51.75	39.8	26.85
Merged-chr3-88738820-3	chr3	88738335	88739335	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	21981.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	5.15	1.38	3.7	6.07	1.87	8.04	10.56	5.75	1.25
Merged-chr12-40223970-3	chr12	40223472	40224472	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013562)	promoter-TSS (NM_013562)	608.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	251.7	196.75	85.1	298.23	255.65	98.87	203.84	216.66	62.45
Merged-chr7-55846360-3	chr7	55845846	55846846	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	ORR1C2|LTR|ERVL-MaLR	4275.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	21.74	29.49	25.9	25.64	14.0	47.42	27.46	34.05	40.59
Merged-chr17-34072264-3	chr17	34071771	34072771	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	16.59	9.22	25.9	6.75	3.73	4.82	28.52	28.3	17.49
Merged-chr15-78246344-3	chr15	78245866	78246866	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	1555.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	53.2	76.95	51.8	60.72	51.32	79.58	79.21	61.9	54.33
Merged-chr18-69595946-3	chr18	69595459	69596459	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	249799.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	36.04	42.85	20.35	66.8	58.78	59.48	45.42	40.68	30.6
Merged-chr18-10646666-3	chr18	10646150	10647150	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134130, intron 8 of 8)	intron (NM_134130, intron 8 of 8)	28854.0	NM_009226	20641.0	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	7.44	7.83	7.4	10.12	6.53	9.65	8.45	7.07	11.87
Merged-chr19-33120201-3	chr19	33119718	33120718	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36894.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	23.45	29.95	12.95	35.09	29.39	31.35	43.3	30.07	23.11
Merged-chr2-180251435-3	chr2	180250938	180251938	+	961.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5941.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	3.43	3.69	3.7	4.05	3.27	1.61	5.28	0.0	1.25
Merged-chr11-63827779-3	chr11	63827297	63828297	+	961.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94487.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	12.01	14.28	3.7	8.1	9.33	6.43	19.01	17.24	11.24
Merged-chr11-63135856-3	chr11	63135360	63136360	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3057.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	7.44	11.06	7.4	18.89	17.73	31.35	12.67	9.73	14.36
Merged-chr17-5711571-3	chr17	5711060	5712060	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 3 of 8)	intron (NM_146073, intron 3 of 8)	-87097.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	13.16	7.83	1.85	10.8	7.93	7.23	5.28	1.33	7.49
Merged-chr1-155065947-3	chr1	155065448	155066448	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	17316.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	92.67	48.38	28.67	98.51	36.39	53.05	64.43	51.29	22.48
Merged-chr5-65960460-3	chr5	65959964	65960964	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6660.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	21.17	13.82	13.87	16.87	13.53	11.25	26.4	16.36	10.62
Merged-chr1-86179034-3	chr1	86178540	86179540	+	961.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 9 of 20)	intron (NM_027456, intron 9 of 20)	24260.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	11.44	2.3	6.47	6.07	4.67	3.22	3.17	3.54	3.75
Merged-chr16-25805158-2	chr16	25804653	25805653	+	961.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127262, intron 1 of 10)	intron (NM_001127262, intron 1 of 10)	3237.0	NM_001127264	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.58	5.53	12.95	13.49	2.33	4.02	16.9	8.4	18.74
Merged-chr2-165946361-3	chr2	165945855	165946855	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-46282.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	120.7	68.66	47.17	152.49	71.84	90.83	116.18	106.56	61.2
Merged-chr2-58802677-3	chr2	58802186	58803186	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47502.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	33.18	23.96	14.8	15.52	23.79	44.21	27.46	36.26	13.12
Merged-chr7-75686252-3	chr7	75685698	75686698	+	961.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 13 of 36)	intron (NM_029332, intron 13 of 36)	-162140.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	84.66	109.21	66.6	78.94	63.45	65.91	66.54	66.77	55.58
Merged-chr2-119740762-3	chr2	119740274	119741274	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1563.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	17.73	9.22	27.75	7.42	9.33	12.06	17.96	8.4	10.62
Merged-chr11-72205639-3	chr11	72205151	72206151	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155065, intron 1 of 19)	intron (NR_155065, intron 1 of 19)	1831.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	57.78	53.91	48.1	80.97	62.51	53.85	103.51	107.45	40.59
Merged-chr5-63970629-4	chr5	63970100	63971100	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-1703.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	53.2	43.77	43.47	49.25	38.25	31.35	63.37	47.75	62.45
Merged-chr9-100499096-1	chr9	100498596	100499596	+	961.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	L1M4|LINE|L1	7760.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	36.04	21.66	21.27	30.36	25.19	32.15	12.67	11.94	10.62
Merged-chr11-115612931-3	chr11	115612407	115613407	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	62.0	NM_001243584	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	88.67	82.02	93.42	93.11	67.64	131.82	133.08	121.15	73.69
Merged-chr6-136492382-3	chr6	136491890	136492890	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26461.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	13.16	10.14	7.4	14.84	7.46	10.45	13.73	6.19	8.74
Merged-chr2-173538711-3	chr2	173538197	173539197	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16105.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	48.05	68.2	60.12	64.1	74.17	61.89	125.69	122.92	64.33
Merged-chr15-76948493-3	chr15	76948036	76949036	+	961.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	275.0	NM_001347540	117171.0	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	71.51	109.67	74.0	57.35	67.64	82.79	99.28	93.3	69.32
Merged-chr15-95963246-3	chr15	95962746	95963746	+	961.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 17 of 19)	MIRc|SINE|MIR	116307.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	23.45	17.97	6.47	16.87	17.73	20.9	10.56	12.38	6.87
Merged-chr7-132813141-3	chr7	132812635	132813635	+	961.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_212473)	promoter-TSS (NM_212473)	61.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	141.3	134.09	136.89	161.26	128.76	138.25	114.07	112.75	80.56
Merged-chr19-24281838-3	chr19	24281344	24282344	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	15.45	13.36	9.25	2.7	3.73	8.84	8.45	3.98	8.74
Merged-chr7-88230957-3	chr7	88230465	88231465	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCc|LINE|L1	-47120.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	133.29	138.24	84.17	166.66	144.62	51.44	165.82	187.04	86.81
Merged-chr2-168557060-3	chr2	168556566	168557566	+	961.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	33299.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	39.47	40.55	46.25	41.16	25.66	28.94	45.42	15.92	11.87
Merged-chr15-59680900-5	chr15	59680428	59681428	+	961.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32274.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	114.98	151.6	93.42	151.14	139.49	131.02	161.6	183.94	79.32
Merged-chr14-70867958-2	chr14	70867458	70868458	+	961.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	Lx|LINE|L1	15025.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	14.3	12.44	5.55	9.45	7.93	12.86	7.39	7.07	2.5
Merged-chr2-122348794-4	chr2	122348313	122349313	+	961.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001099297)	TTS (NM_001099297)	20105.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	9.72	17.97	11.1	13.49	6.53	8.84	11.62	6.63	7.49
Merged-chr11-87039479-3	chr11	87038972	87039972	+	961.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025638, intron 7 of 9)	B4A|SINE|B4	34665.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	34.32	29.03	35.15	58.7	54.11	65.91	58.09	44.22	41.22
Merged-chr2-103683089-3	chr2	103682589	103683589	+	961.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 2 of 16)	intron (NM_178890, intron 2 of 16)	78181.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	24.6	13.82	23.12	22.94	10.26	16.08	41.19	37.14	22.48
Merged-chr16-90222411-3	chr16	90221905	90222905	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1663.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	60.07	54.37	30.52	51.95	41.99	26.53	42.25	46.43	21.86
Merged-chr16-57339625-3	chr16	57339124	57340124	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-13653.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	17.16	13.36	15.72	10.8	7.0	3.22	10.56	11.5	16.24
Merged-chr12-3391563-3	chr12	3391063	3392063	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008445, intron 5 of 7)	intron (NM_008445, intron 5 of 7)	26431.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	64.64	103.22	24.97	97.83	84.9	45.01	183.78	201.19	74.94
Merged-chr16-13372151-3	chr16	13371664	13372664	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153588, intron 1 of 14)	intron (NM_153588, intron 1 of 14)	13743.0	NM_153588	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	12.59	12.9	7.4	16.19	14.93	15.27	11.62	11.5	5.0
Merged-chr13-113640663-1	chr13	113640163	113641163	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22099.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	13.73	6.91	10.17	3.37	0.47	4.82	4.22	0.0	6.87
Merged-chr7-25765257-3	chr7	25764760	25765760	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-10501.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	30.89	24.42	41.62	18.22	16.79	43.4	24.29	23.43	30.6
Merged-chr6-29529594-2	chr6	29529086	29530086	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252382, intron 1 of 8)	intron (NM_001252382, intron 1 of 8)	304.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	100.68	65.43	82.32	109.3	69.04	94.04	113.01	85.34	54.33
Merged-chr14-17410971-3	chr14	17410469	17411469	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249991.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	31.46	38.71	37.0	39.81	44.78	37.78	44.36	64.11	48.09
Merged-chr19-23028411-2	chr19	23027917	23028917	+	961.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112809.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	2.29	1.38	1.85	3.37	8.86	15.27	15.84	13.71	26.85
Merged-chr10-59261747-3	chr10	59261223	59262223	+	961.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	39801.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	45.19	41.93	34.22	58.03	31.26	44.21	94.0	65.44	57.46
Merged-chr1-191097246-3	chr1	191096755	191097755	+	961.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	127.0	116.58	84.17	118.08	91.44	105.3	148.92	165.81	87.43
Merged-chr9-21368421-3	chr9	21367921	21368921	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277322)	promoter-TSS (NM_001277322)	-111.0	NM_001277322	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	77.23	64.97	74.92	76.24	61.11	72.34	79.21	75.61	37.47
Merged-chr8-117280584-3	chr8	117280096	117281096	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	23577.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	35.47	26.26	33.3	37.11	21.46	35.37	35.91	28.74	36.22
Merged-chr8-70342412-3	chr8	70341921	70342921	+	961.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030680, intron 3 of 23)	intron (NM_030680, intron 3 of 23)	10858.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	58.35	47.92	37.92	85.69	87.24	115.75	69.71	74.28	46.22
Merged-chr3-61365702-4	chr3	61365133	61366133	+	961.4249880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	1126.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	91.53	108.75	104.52	62.07	87.24	150.31	126.74	139.28	121.78
Merged-chr1-21166455-2	chr1	21165955	21166955	+	961.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52120.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	4.0	5.99	1.85	6.07	4.67	3.22	2.11	0.0	1.25
Merged-chr13-4616802-3	chr13	4616318	4617318	+	961.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7654.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	21.74	17.51	16.65	31.04	21.93	15.27	33.8	26.09	19.36
Merged-chr7-6169668-3	chr7	6169169	6170169	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91A|DNA|hAT-Tip100	-2844.0	NM_028316	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	51.48	47.46	46.25	42.51	35.92	49.03	52.81	59.69	44.34
Merged-chr11-106134859-3	chr11	106134358	106135358	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	25069.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	147.59	145.15	126.72	173.4	121.76	110.12	168.99	225.51	109.29
Merged-chr2-153496532-3	chr2	153496014	153497014	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	33457.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	11.44	7.83	6.47	16.19	14.93	8.84	14.79	9.73	8.12
Merged-chr3-31090182-3	chr3	31089684	31090684	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	10.3	10.6	7.4	20.24	7.93	11.25	33.8	10.61	20.61
Merged-chr14-73169525-3	chr14	73169017	73170017	+	961.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	Lx3_Mus|LINE|L1	26732.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	136.72	82.48	62.9	145.06	99.83	86.01	117.24	114.52	61.83
Merged-chr4-133873091-3	chr4	133872577	133873577	+	961.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	1654.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	72.65	61.28	61.97	76.92	56.91	86.01	54.92	65.44	81.19
Merged-chr6-136835729-2	chr6	136835218	136836218	+	961.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039558)	promoter-TSS (NM_001039558)	-268.0	NM_001039558	654818.0	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	17.73	7.83	9.25	19.57	24.72	20.09	2.11	1.77	1.25
Merged-chr5-122637921-2	chr5	122637427	122638427	+	961.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5984.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	66.93	22.58	11.1	56.68	26.12	12.86	6.34	2.21	2.5
Merged-chr4-133412969-2	chr4	133412459	133413459	+	961.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016981, intron 2 of 11)	B1_Mus1|SINE|Alu	43183.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	52.06	36.86	22.2	108.63	85.37	62.7	12.67	7.52	10.62
Merged-chr13-100452609-2	chr13	100452124	100453124	+	961.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	intron (NM_008670, intron 1 of 15)	240.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	61.78	63.13	56.42	31.71	44.32	44.21	212.29	254.25	173.62
Merged-chr13-58128085-3	chr13	58127559	58128559	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	497.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	296.32	317.02	332.98	295.53	263.11	242.74	275.66	195.0	177.99
Merged-chr2-73041946-3	chr2	73041447	73042447	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61501.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	48.62	45.16	37.92	86.36	69.04	73.95	92.94	113.19	63.08
Merged-chr2-34646462-3	chr2	34645968	34646968	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	108764.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	7.44	3.69	3.7	10.8	4.67	6.43	1.06	4.42	1.25
Merged-chr10-67114017-3	chr10	67113525	67114525	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13233.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	124.71	134.09	49.02	109.98	98.9	41.8	95.06	112.31	43.09
Merged-chr19-41764088-3	chr19	41763600	41764600	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17139.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	2.86	5.07	8.32	7.42	3.27	11.25	9.51	11.5	16.24
Merged-chr14-63111824-3	chr14	63111332	63112332	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-10630.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	33.18	14.75	13.87	16.87	14.0	8.84	17.96	13.27	9.99
Merged-chr15-88733341-3	chr15	88732857	88733857	+	961.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	862.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	154.45	129.02	160.02	160.58	104.5	176.83	210.18	107.0	104.92
Merged-chr1-171825613-1	chr1	171825113	171826113	+	961.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14084.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	18.31	17.97	16.65	41.16	45.25	40.99	6.34	20.78	7.49
Merged-chrX-48453621-4	chrX	48453105	48454105	+	961.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	CpG	9527.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	135.58	133.17	133.19	122.8	112.9	106.1	122.52	95.07	99.92
Merged-chr6-145348351-3	chr6	145347837	145348837	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-39288.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	8.58	0.92	7.4	6.07	4.67	2.41	6.34	1.33	1.25
Merged-chr16-21716788-3	chr16	21716289	21717289	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-22124.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	27.46	11.52	9.25	41.16	24.26	37.78	11.62	15.48	7.49
Merged-chr5-149235277-3	chr5	149234778	149235778	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-29726.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	32.04	26.26	20.35	33.06	40.12	46.62	35.91	24.32	22.48
Merged-chr12-86906525-3	chr12	86905960	86906960	+	961.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21646.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	8.58	5.99	4.62	2.02	2.33	0.0	5.28	0.88	2.5
Merged-chr15-35705737-3	chr15	35705253	35706253	+	961.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-44706.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	14.87	14.75	22.2	20.24	19.59	16.08	12.67	13.71	8.74
Merged-chrX-163744118-3	chrX	163743596	163744596	+	961.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	17236.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	18.31	33.18	28.67	26.31	13.06	24.11	30.63	33.6	23.11
Merged-chr6-52303644-1	chr6	52303144	52304144	+	961.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9854.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	2.29	6.45	5.55	2.02	0.93	4.82	2.11	3.54	8.74
Merged-chr15-101267623-4	chr15	101267136	101268136	+	961.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010444, intron 1 of 6)	intron (NM_010444, intron 1 of 6)	790.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	41.19	35.48	20.35	30.36	30.79	54.66	28.52	27.86	25.61
Merged-chr9-95637797-5	chr9	95637268	95638268	+	961.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029620, exon 1 of 9)	5' UTR (NM_029620, exon 1 of 9)	140.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	110.41	120.26	99.89	136.97	173.07	161.56	196.45	196.76	91.81
Merged-chrX-159200312-3	chrX	159199812	159200812	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55470.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	16.02	17.97	8.32	16.87	12.13	6.43	11.62	9.73	16.24
Merged-chr10-44460299-3	chr10	44459778	44460778	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1530.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	37.18	25.34	26.82	39.13	10.26	23.31	35.91	27.41	23.73
Merged-chr7-123394272-3	chr7	123393781	123394781	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-13536.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	63.5	76.95	70.3	87.71	79.77	51.44	82.38	96.83	52.46
Merged-chr7-141369080-3	chr7	141368573	141369573	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3963.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	38.33	56.68	64.75	49.93	46.18	69.13	80.27	57.04	58.08
Merged-chr3-38114637-3	chr3	38114138	38115138	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93481.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	17.73	34.1	17.57	29.01	21.93	8.84	23.24	17.69	22.48
Merged-chr6-88861164-3	chr6	88860668	88861668	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347327, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	12876.0	NM_176973	319655.0	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	2.86	3.69	7.4	1.35	3.73	6.43	1.06	0.44	7.49
Merged-chr12-102695512-3	chr12	102694979	102695979	+	961.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9390.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	164.75	176.48	118.39	114.7	127.82	167.19	160.54	215.34	106.17
Merged-chr8-70718566-4	chr8	70718108	70719108	+	961.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195253)	promoter-TSS (NM_001195253)	65.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	22.88	16.59	22.2	31.71	25.19	51.44	19.01	18.57	17.49
Merged-chr5-148554902-3	chr5	148554378	148555378	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2090.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	19.45	19.81	12.95	24.29	26.59	27.33	59.15	61.46	36.22
Merged-chr13-113807336-1	chr13	113806836	113807836	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	12828.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	58.92	33.18	40.7	0.67	2.33	2.41	4.22	1.77	1.25
Merged-chr16-21412799-3	chr16	21412299	21413299	+	961.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10319.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	20.59	37.78	12.95	20.92	15.86	20.09	23.24	30.95	23.73
Merged-chr5-144965947-5	chr5	144965423	144966423	+	961.159973	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029438)	promoter-TSS (NM_029438)	-93.0	NM_029438	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	39.47	39.63	88.8	38.46	27.52	65.11	59.15	36.7	36.85
Merged-chr11-80142130-3	chr11	80141583	80142583	+	961.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183275)	promoter-TSS (NM_183275)	70.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	195.07	129.48	132.27	178.8	168.88	183.26	208.07	197.65	91.81
Merged-chr18-68220451-3	chr18	68219942	68220942	+	961.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L1M4b|LINE|L1	-7504.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	49.2	38.25	13.87	54.65	47.58	33.76	42.25	33.16	32.48
Merged-chr1-190911064-2	chr1	190910564	190911564	+	961.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	706.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	88.1	98.61	91.57	104.58	102.17	96.45	68.65	68.98	38.72
Merged-chr3-84334060-3	chr3	84333586	84334586	+	961.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-29311.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	9.15	4.15	11.1	10.12	9.8	9.65	7.39	5.75	11.87
Merged-chr7-28795971-3	chr7	28795451	28796451	+	961.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177158, exon 8 of 12)	exon (NM_177158, exon 8 of 12)	6982.0	NM_177158	320435.0	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	65.79	94.46	110.07	63.42	67.64	99.67	90.83	114.96	136.77
Merged-chr17-34364852-3	chr17	34364336	34365336	+	961.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 6 of 8)	intron (NM_079835, intron 6 of 8)	10014.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	201.36	165.88	126.72	80.97	52.25	45.01	101.39	134.42	47.46
Merged-chr5-134102860-3	chr5	134102370	134103370	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	3122.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	30.89	18.89	20.35	45.21	23.33	44.21	46.47	32.28	25.61
Merged-chr9-108460141-3	chr9	108459648	108460648	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133744)	promoter-TSS (NM_133744)	-370.0	NM_133744	72454.0	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	80.66	55.75	49.95	62.07	39.65	53.05	67.6	57.48	33.72
Merged-chr6-17520852-3	chr6	17520359	17521359	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	56902.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	24.6	10.14	14.8	15.52	17.26	9.65	7.39	6.19	3.75
Merged-chr15-84254256-3	chr15	84253740	84254740	+	961.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	Tigger17c|DNA|TcMar-Tigger	22197.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	40.62	52.07	29.6	43.86	27.99	38.58	71.82	56.6	42.47
Merged-chr10-121483768-1	chr10	121483268	121484268	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7518.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	8.58	13.82	11.1	20.24	12.13	18.49	9.51	4.86	6.25
Merged-chr1-55430817-1	chr1	55430317	55431317	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24871.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	18.88	16.13	16.65	87.71	83.97	71.54	14.79	11.05	11.24
Merged-chr11-83600789-3	chr11	83600287	83601287	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 1 of 8)	intron (NR_036453, intron 1 of 8)	-7700.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	20.59	27.19	16.65	76.24	70.44	76.36	58.09	55.27	37.47
Merged-chr14-47361911-5	chr14	47361385	47362385	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-11975.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	90.38	105.52	59.2	136.97	122.23	100.47	302.07	355.94	181.11
Merged-chr17-49423055-3	chr17	49422554	49423554	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5310.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	20.02	23.04	20.35	21.59	14.46	45.01	26.4	3.54	15.61
Merged-chr16-20293990-1	chr16	20293490	20294490	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005767, intron 3 of 9)	intron (NM_001005767, intron 3 of 9)	8372.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	13.16	8.75	20.35	10.12	10.73	20.9	8.45	10.17	6.25
Merged-chr19-32180350-3	chr19	32179858	32180858	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	30655.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	52.06	28.11	6.47	90.41	53.18	16.08	20.07	23.43	5.0
Merged-chr7-135667459-1	chr7	135666959	135667959	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316681, intron 7 of 17)	intron (NM_001316681, intron 7 of 17)	-15145.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	5.72	4.61	3.7	9.45	8.86	10.45	3.17	0.88	4.37
Merged-chr5-8893715-3	chr5	8893241	8894241	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008830)	promoter-TSS (NM_008830)	20.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	31.46	13.36	24.97	35.09	24.72	26.53	40.14	32.28	16.86
Merged-chr2-128008980-4	chr2	128008530	128009530	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 11 of 17)	intron (NM_028765, intron 11 of 17)	-117008.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	87.52	64.51	65.67	68.82	58.78	49.83	97.17	78.71	54.96
Merged-chr12-78861028-3	chr12	78860544	78861544	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023721, intron 1 of 8)	intron (NM_023721, intron 1 of 8)	594.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	188.21	193.99	133.19	247.62	267.78	142.27	243.98	242.31	101.8
Merged-chr10-105273342-2	chr10	105272832	105273832	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 8 of 11)	intron (NM_177368, intron 8 of 11)	301147.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	7.44	11.52	5.55	16.19	7.0	12.06	19.01	8.4	6.25
Merged-chr11-58168450-3	chr11	58167886	58168886	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172558, exon 1 of 28)	exon (NM_172558, exon 1 of 28)	153.0	NM_172558	216766.0	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem nuclear organelle associated protein 5	protein-coding	40.62	28.11	19.42	34.41	20.99	32.96	44.36	26.53	21.23
Merged-chr9-53390671-1	chr9	53390171	53391171	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_212445, exon 3 of 8)	exon (NM_212445, exon 3 of 8)	6648.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	21.17	14.75	9.25	29.69	9.33	9.65	29.57	16.36	12.49
Merged-chr11-76458981-3	chr11	76458519	76459519	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	9446.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	26.31	23.5	10.17	43.86	28.46	31.35	32.74	31.39	22.48
Merged-chr11-117783834-3	chr11	117783328	117784328	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 4 of 16)	exon (NM_001195088, exon 4 of 16)	1170.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	49.77	41.93	55.5	71.52	52.72	97.26	50.7	46.87	39.35
Merged-chr8-105856252-1	chr8	105855752	105856752	+	961.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021513, exon 1 of 1)	exon (NM_021513, exon 1 of 1)	1149.0	NM_021513	59016.0	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	22.88	26.73	25.9	27.66	20.99	45.82	28.52	22.11	25.61
Merged-chr3-52756402-3	chr3	52755883	52756883	+	961.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	16659.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	27.46	24.42	14.8	10.8	6.06	1.61	63.37	33.6	20.61
Merged-chr11-103117251-4	chr11	103116771	103117771	+	960.994019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138753, exon 1 of 1)	exon (NM_138753, exon 1 of 1)	946.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	119.56	105.06	85.1	122.12	80.71	110.92	65.48	99.05	67.45
Merged-chr15-64046503-2	chr15	64046006	64047006	+	960.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	13258.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	113.84	106.9	84.17	104.58	65.31	69.13	120.41	95.51	89.31
Merged-chr5-99240760-3	chr5	99240275	99241275	+	960.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	12152.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	62.35	55.75	51.8	38.46	36.39	64.3	66.54	60.58	35.6
Merged-chr4-16213477-3	chr4	16212979	16213979	+	960.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 3 of 6)	Lx8b|LINE|L1	49369.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	21.17	23.96	19.42	21.59	20.53	24.11	23.24	15.03	15.61
Merged-chr4-109665980-4	chr4	109665469	109666469	+	960.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	-597.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	65.21	81.56	56.42	40.48	55.98	70.73	99.28	105.68	68.07
Merged-chr13-34007421-3	chr13	34006916	34007916	+	960.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009068, intron 1 of 10)	intron (NM_009068, intron 1 of 10)	4542.0	NM_009068	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	102.4	112.43	77.7	85.69	91.44	100.47	125.69	109.66	50.59
Merged-chr3-149451604-2	chr3	149451103	149452103	+	960.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176866.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	16.59	16.13	8.32	20.24	9.8	1.61	0.0	9.73	0.0
Merged-chr14-16427790-3	chr14	16427272	16428272	+	960.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009409, intron 33 of 35)	intron (NM_009409, intron 33 of 35)	62566.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	8.58	16.13	0.0	7.42	7.46	10.45	15.84	7.52	8.74
Merged-chr2-128771235-3	chr2	128770728	128771728	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-47075.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	27.46	18.89	52.72	33.74	21.46	20.9	32.74	26.97	18.74
Merged-chr12-111592634-3	chr12	111592130	111593130	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022801, exon 2 of 16)	exon (NM_022801, exon 2 of 16)	18120.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	47.48	54.83	29.6	22.27	16.33	27.33	23.24	29.18	24.98
Merged-chr10-86779791-3	chr10	86779285	86780285	+	960.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	780.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	95.53	62.67	54.57	72.19	69.04	91.63	54.92	60.13	27.48
Merged-chr10-24151480-3	chr10	24151000	24152000	+	960.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	2183.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	42.33	35.48	47.17	42.51	21.46	62.7	67.6	28.3	34.35
Merged-chr16-50482519-3	chr16	50482035	50483035	+	960.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-43710.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	20.59	5.07	12.95	8.77	10.73	8.04	11.62	7.07	6.25
Merged-chr1-171247683-2	chr1	171247185	171248185	+	960.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-563.0	NM_153064	226646.0	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	120.13	112.43	109.14	136.97	102.17	147.09	102.45	137.51	91.18
Merged-chr15-11765114-2	chr15	11764624	11765624	+	960.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	140550.0	NM_008728	18162.0	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	6.86	2.3	2.77	10.12	1.87	5.63	5.28	7.07	6.25
Merged-chr12-3356992-3	chr12	3356483	3357483	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8149.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	32.61	58.98	38.85	64.77	41.52	65.11	126.74	157.41	64.95
Merged-chr3-8982592-3	chr3	8982107	8983107	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-18461.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	271.73	264.03	173.89	257.07	233.25	184.87	283.06	387.78	161.75
Merged-chr11-20831069-6	chr11	20830599	20831599	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	9.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	38.33	17.51	24.05	41.83	19.59	38.58	34.85	11.94	14.36
Merged-chr7-30600145-3	chr7	30599625	30600625	+	960.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1216.0	NR_153655	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	5.72	2.3	6.47	10.12	6.53	4.82	6.34	0.88	0.62
Merged-chr14-55685978-3	chr14	55685486	55686486	+	960.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4169.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	41.76	30.87	12.95	56.68	35.92	22.51	67.6	74.28	33.72
Merged-chr10-25279511-3	chr10	25278986	25279986	+	960.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19677.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	26.31	12.9	17.57	26.99	18.66	16.08	19.01	18.57	11.24
Merged-chr1-138939859-2	chr1	138939351	138940351	+	960.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-23858.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.57	5.53	1.85	14.84	14.93	8.04	22.18	27.41	9.37
Merged-chr12-17741723-3	chr12	17741229	17742229	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	50920.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.72	12.44	14.8	9.45	4.67	4.82	12.67	3.54	6.25
Merged-chr18-5162221-3	chr18	5161725	5162725	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153824)	TTS (NR_153824)	3506.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	11.44	12.9	16.65	20.24	15.86	21.7	13.73	7.07	3.12
Merged-chr1-165617377-3	chr1	165616874	165617874	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	17167.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	232.83	190.3	143.37	267.86	212.26	175.23	227.08	257.34	123.03
Merged-chr19-40663267-3	chr19	40662777	40663777	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	3507.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	109.83	130.4	114.69	184.87	160.48	169.6	161.6	201.63	89.93
Merged-chr2-73567214-3	chr2	73566703	73567703	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007389, intron 7 of 8)	intron (NM_007389, intron 7 of 8)	13135.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	7.44	3.23	4.62	3.37	2.8	4.02	3.17	2.21	1.25
Merged-chr13-37322965-3	chr13	37322470	37323470	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22375.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.86	5.07	1.85	4.05	2.8	0.0	7.39	1.77	2.5
Merged-chr4-119635476-3	chr4	119634885	119635885	+	960.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2347.0	NM_008190	14915.0	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	2.86	1.84	1.85	4.72	2.8	4.02	6.34	1.77	1.25
Merged-chr11-117087172-3	chr11	117086671	117087671	+	960.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9823.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	108.12	80.18	84.17	95.14	74.64	74.75	137.3	152.55	63.08
Merged-chrX-74305030-2	chrX	74304525	74305525	+	960.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010273)	promoter-TSS (NM_010273)	13.0	NM_010273	14567.0	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	38.33	23.04	27.75	32.39	27.99	53.05	70.76	35.82	43.09
Merged-chr8-40495852-2	chr8	40495356	40496356	+	960.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011135, exon 6 of 7)	exon (NM_011135, exon 6 of 7)	14623.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	21.17	21.2	9.25	12.14	16.33	20.9	8.45	4.42	6.25
Merged-chr7-101840101-3	chr7	101839594	101840594	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001303239, exon 6 of 6)	3' UTR (NM_001303239, exon 6 of 6)	-1868.0	NM_010567	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	39.47	26.73	50.87	31.71	24.72	50.64	38.02	31.39	25.61
Merged-chr7-117487055-3	chr7	117486558	117487558	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	MIR|SINE|MIR	106079.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	36.04	52.99	51.8	34.41	57.85	74.75	17.96	21.67	36.85
Merged-chr2-156258653-3	chr2	156258145	156259145	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-53828.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	68.65	52.53	61.97	104.58	78.84	57.87	74.99	71.63	38.1
Merged-chr16-16554562-3	chr16	16554061	16555061	+	960.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	5658.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	48.05	44.7	32.37	99.86	81.64	67.52	67.6	55.71	43.72
Merged-chr2-14272270-3	chr2	14271767	14272767	+	960.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 9 of 29)	intron (NM_008625, intron 9 of 29)	11264.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	33.75	21.66	27.75	33.06	16.33	25.72	27.46	15.03	22.48
Merged-chr10-58529482-3	chr10	58528964	58529964	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 10 of 15)	MTD|LTR|ERVL-MaLR	31527.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	77.23	93.08	51.8	36.43	41.99	18.49	96.11	92.86	61.2
Merged-chr4-147125063-3	chr4	147124558	147125558	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50808.0	NM_001039209	195531.0	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	21.17	15.21	1.85	24.29	15.39	27.33	21.12	7.96	9.37
Merged-chr5-43879580-3	chr5	43879046	43880046	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	RSINE1|SINE|B4	10737.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	81.23	118.42	97.12	119.43	96.1	108.51	114.07	132.21	81.81
Merged-chr2-77946475-3	chr2	77945974	77946974	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290740)	promoter-TSS (NM_001290740)	-118.0	NM_030560	80744.0	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	169.33	229.93	123.94	161.26	181.01	106.1	212.29	222.41	96.18
Merged-chr16-14132042-3	chr16	14131534	14132534	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081154, intron 15 of 26)	intron (NM_001081154, intron 15 of 26)	27240.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	21.74	22.12	20.35	25.64	23.33	19.29	14.79	26.53	13.74
Merged-chr14-103777584-1	chr14	103777084	103778084	+	960.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66117.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	14.87	5.07	1.85	11.47	7.46	24.92	8.45	4.86	7.49
Merged-chr18-9484688-3	chr18	9484184	9485184	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-34530.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	32.61	14.75	15.72	62.07	45.72	16.08	53.87	38.03	13.12
Merged-chr8-22498138-1	chr8	22497638	22498638	+	960.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-21259.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	2.29	1.84	4.62	3.37	5.13	0.0	12.67	9.73	4.37
Merged-chr15-82126850-3	chr15	82126350	82127350	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310435)	TTS (NM_001310435)	-1072.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	116.13	148.37	147.07	158.56	114.76	114.14	175.33	261.76	136.15
Merged-chr10-7834516-3	chr10	7833997	7834997	+	960.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	intron (NM_172785, intron 1 of 5)	-1884.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	269.44	305.5	247.89	279.33	264.98	213.0	291.51	346.66	172.99
Merged-chr17-27585074-2	chr17	27584579	27585579	+	960.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	RLTR20A2B_MM|LTR|ERVK	-19352.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	21.17	30.87	33.3	3.37	0.93	0.8	4.22	13.27	6.25
Merged-chr2-153779135-2	chr2	153778632	153779632	+	960.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1747.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	3.43	2.76	3.7	6.75	9.8	6.43	21.12	15.03	7.49
Merged-chr7-63929317-3	chr7	63928769	63929769	+	960.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	9646.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	45.19	66.35	53.65	29.69	21.93	49.83	39.08	46.43	44.97
Merged-chr7-34133314-3	chr7	34132814	34133814	+	960.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207212)	promoter-TSS (NM_207212)	-46.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	25.74	11.98	27.75	22.94	9.33	17.68	26.4	7.52	11.24
Merged-chr8-128166354-3	chr8	128165851	128166851	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111874.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	12.59	10.6	7.4	16.87	10.26	0.8	24.29	29.63	21.23
Merged-chr5-135677418-3	chr5	135676888	135677888	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-11757.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	12.59	4.61	11.1	15.52	14.0	14.47	7.39	6.19	8.74
Merged-chr11-43410478-3	chr11	43409982	43410982	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15499.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	24.6	15.21	10.17	15.52	8.86	2.41	10.56	3.54	11.24
Merged-chr12-54999201-3	chr12	54998721	54999721	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12885.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	41.19	28.57	31.45	53.98	34.52	40.99	31.69	29.63	16.24
Merged-chr2-130729486-3	chr2	130728981	130729981	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 28 of 36)	intron (NM_029432, intron 28 of 36)	-31962.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	32.04	32.25	24.97	107.28	61.58	70.73	34.85	31.39	18.74
Merged-chr18-23808981-3	chr18	23808485	23809485	+	960.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	5015.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	182.49	193.53	162.79	179.47	146.02	125.39	205.96	243.63	101.8
Merged-chr13-107101767-3	chr13	107101271	107102271	+	960.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79201.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	14.87	26.26	7.4	9.45	14.46	11.25	14.79	13.27	16.86
Merged-chr5-21054799-3	chr5	21054256	21055256	+	960.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	intron (NM_011203, intron 1 of 17)	1155.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	137.29	161.27	142.44	138.32	117.09	151.11	179.55	153.87	102.42
Merged-chr16-84585165-2	chr16	84584670	84585670	+	960.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94619.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	5.72	8.29	0.0	4.72	3.73	1.61	4.22	5.31	2.5
Merged-chr3-152479110-3	chr3	152478585	152479585	+	960.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 11 of 13)	intron (NM_001081277, intron 11 of 13)	82401.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	28.6	21.66	32.37	32.39	22.86	34.56	30.63	18.13	24.98
Merged-chr7-122356685-3	chr7	122356210	122357210	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	L1MB2|LINE|L1	67585.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	23.45	17.51	16.65	27.66	30.79	16.88	14.79	18.57	9.99
Merged-chr11-115491766-3	chr11	115491238	115492238	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015807)	promoter-TSS (NM_015807)	76.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	49.2	45.16	67.52	48.58	27.52	67.52	53.87	50.85	44.34
Merged-chr18-70645005-3	chr18	70644494	70645494	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	76702.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	63.5	68.66	40.7	73.54	53.18	57.07	115.12	106.56	55.58
Merged-chr16-24595863-3	chr16	24595353	24596353	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	66539.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	42.33	35.94	12.95	33.06	15.39	18.49	34.85	24.76	24.98
Merged-chr5-121845904-3	chr5	121845393	121846393	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3104.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	37.18	14.28	7.4	33.06	16.79	33.76	10.56	11.5	9.37
Merged-chr15-61998989-3	chr15	61998487	61999487	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13646.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	45.76	44.24	12.95	76.92	35.45	40.19	32.74	20.34	23.11
Merged-chr12-99999650-3	chr12	99999144	100000144	+	960.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1C1|LTR|ERVL-MaLR	35145.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	25.74	17.51	6.47	66.12	27.99	36.17	46.47	15.48	15.61
Merged-chr1-80614320-3	chr1	80613797	80614797	+	960.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	RLTR20A4|LTR|ERVK	51055.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	58.35	77.41	49.95	86.36	47.58	67.52	88.72	65.88	47.46
Merged-chr17-29318778-1	chr17	29318278	29319278	+	960.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023734)	promoter-TSS (NM_023734)	-104.0	NM_023734	74116.0	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	1.14	5.07	0.0	1.35	0.0	5.63	2.11	1.77	5.0
Merged-chr13-5863183-1	chr13	5862683	5863683	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011803, intron 1 of 3)	intron (NM_011803, intron 1 of 3)	1694.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	457.07	615.15	244.19	387.96	544.42	241.14	456.27	573.49	287.91
Merged-chr6-32395576-3	chr6	32395079	32396079	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-115562.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	22.88	10.14	12.02	45.88	27.06	16.08	31.69	33.16	1.87
Merged-chr13-81136172-3	chr13	81135668	81136668	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	172094.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	221.38	198.14	135.04	234.13	226.72	193.71	226.02	280.78	142.39
Merged-chr8-120535172-3	chr8	120534674	120535674	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145897)	promoter-TSS (NM_001145897)	-683.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	5.72	3.69	3.7	6.75	4.2	1.61	6.34	5.31	7.49
Merged-chr12-34682815-1	chr12	34682315	34683315	+	960.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	Lx8b|LINE|L1	-153926.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	21.74	17.51	11.1	22.27	17.26	20.09	13.73	16.8	19.36
Merged-chr3-15284628-3	chr3	15284131	15285131	+	960.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47671.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	174.48	201.36	92.5	201.07	236.52	100.47	143.64	166.25	93.68
Merged-chr11-74638136-3	chr11	74637625	74638625	+	960.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11370.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	74.37	52.99	57.35	81.64	62.05	93.24	73.93	52.18	53.71
Merged-chr2-60852076-3	chr2	60851593	60852593	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	29345.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	149.88	99.99	109.14	135.62	80.71	96.45	149.98	134.86	76.19
Merged-chr13-16912438-3	chr13	16911928	16912928	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138654, intron 13 of 13)	intron (NM_138654, intron 13 of 13)	782337.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	15.45	9.68	13.87	7.42	9.33	6.43	7.39	8.84	14.36
Merged-chr4-132010619-3	chr4	132010128	132011128	+	960.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	38450.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	137.29	117.5	71.22	205.11	142.29	110.12	124.63	160.06	53.08
Merged-chr17-5429562-3	chr17	5429073	5430073	+	960.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	10687.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	6.29	3.69	7.4	6.07	3.73	8.04	1.06	1.33	0.0
Merged-chr1-36962441-5	chr1	36961963	36962963	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22936.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	83.52	81.56	42.55	70.85	49.45	43.4	73.93	51.73	26.23
Merged-chr5-138085096-3	chr5	138084591	138085591	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029869)	promoter-TSS (NM_029869)	7.0	NM_029869	74570.0	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	236.26	291.22	152.62	248.3	294.37	143.88	228.14	275.91	114.91
Merged-chr4-99208635-3	chr4	99208137	99209137	+	960.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	RLTR49|LTR|ERVK	14490.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	30.32	35.94	26.82	21.59	17.73	8.84	83.44	68.98	21.23
Merged-chr5-43102777-3	chr5	43102279	43103279	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130684.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	20.59	7.83	7.4	22.94	10.26	12.86	23.24	4.86	8.74
Merged-chr8-60954820-3	chr8	60954323	60955323	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173876)	promoter-TSS (NM_173876)	-24.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	16.59	19.35	9.25	16.19	12.13	6.43	14.79	11.5	3.75
Merged-chr6-108442521-3	chr6	108442019	108443019	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-47224.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	16.59	11.06	8.32	30.36	20.99	12.86	21.12	11.5	6.87
Merged-chr2-130179357-3	chr2	130178846	130179846	+	960.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	18.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	196.21	205.51	143.37	200.39	215.53	196.93	186.94	187.92	98.05
Merged-chr15-10876023-2	chr15	10875512	10876512	+	960.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	46961.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	186.49	225.32	172.04	163.96	166.54	153.52	251.37	270.61	136.15
Merged-chr4-70546079-2	chr4	70545585	70546585	+	960.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11157.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	10.3	6.45	6.47	7.42	5.6	11.25	6.34	3.98	5.62
Merged-chr19-24166646-2	chr19	24166136	24167136	+	960.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	7553.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	40.04	38.71	24.05	2.02	4.67	1.61	8.45	2.21	3.12
Merged-chr16-93833772-2	chr16	93833280	93834280	+	960.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1659.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	53.2	64.51	61.97	57.35	55.51	54.66	132.02	135.3	41.84
Merged-chr5-118645380-1	chr5	118644880	118645880	+	960.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	84661.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.86	7.83	5.55	2.02	2.33	1.61	9.51	10.61	5.0
Merged-chr15-34238654-3	chr15	34238144	34239144	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033521, intron 1 of 6)	CpG	618.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	136.15	123.49	62.9	141.02	123.62	73.14	99.28	80.92	66.2
Merged-chr10-128298967-3	chr10	128298460	128299460	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031252)	promoter-TSS (NM_031252)	-876.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	252.85	216.11	129.49	219.28	165.61	172.01	258.77	296.25	151.76
Merged-chr12-55368619-3	chr12	55368130	55369130	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 4 of 6)	intron (NM_025373, intron 4 of 6)	-15592.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	10.87	8.29	8.32	8.77	5.6	8.04	9.51	10.17	6.25
Merged-chr2-126996935-3	chr2	126996407	126997407	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11804.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	14.87	13.82	3.7	15.52	11.66	16.08	16.9	26.53	19.98
Merged-chr11-121722682-3	chr11	121722161	121723161	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20234.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	19.45	16.13	18.5	18.22	13.06	17.68	12.67	14.15	23.11
Merged-chr17-79482150-1	chr17	79481650	79482650	+	960.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-4265.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.57	1.84	0.92	0.67	2.33	3.22	5.28	5.31	1.87
Merged-chr14-32184289-3	chr14	32183819	32184819	+	960.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016897, intron 6 of 6)	intron (NM_016897, intron 6 of 6)	17572.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	59.49	83.86	54.57	78.94	61.58	120.57	91.89	103.47	59.95
Merged-chr11-107405820-3	chr11	107405334	107406334	+	960.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	RSINE1|SINE|B4	64886.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	54.35	60.36	71.22	86.36	62.05	73.95	78.16	82.69	37.47
Merged-chr12-85604540-3	chr12	85604028	85605028	+	960.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	4510.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	39.47	23.5	23.12	47.9	21.93	16.08	44.36	19.9	18.11
Merged-chr1-84864836-3	chr1	84864340	84865340	+	960.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 1 of 3)	ID_B1|SINE|B4	24999.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	17.16	12.44	13.87	14.84	11.2	24.92	21.12	11.94	21.23
Merged-chr13-75791016-2	chr13	75790522	75791522	+	960.283325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48863.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	16.59	15.67	12.02	28.34	13.53	22.51	12.67	17.24	33.72
Merged-chr17-28698329-3	chr17	28697838	28698838	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	5770.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	140.15	99.07	39.77	105.93	76.04	69.13	92.94	71.63	62.45
Merged-chr14-57264168-3	chr14	57263651	57264651	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130540.0	NM_001010937	14623.0	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	2.86	6.45	11.1	5.4	2.33	1.61	1.06	3.54	1.25
Merged-chr9-108827120-3	chr9	108826606	108827606	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1061.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	2.86	2.76	7.4	7.42	2.33	6.43	3.17	4.86	3.75
Merged-chr11-83223486-3	chr11	83222980	83223980	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015519)	promoter-TSS (NR_015519)	-96.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	120.13	162.66	66.6	101.21	115.69	103.69	125.69	130.44	76.19
Merged-chr5-120558983-3	chr5	120558483	120559483	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145853, intron 3 of 27)	intron (NM_145853, intron 3 of 27)	29630.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	12.01	2.76	1.85	5.4	6.06	9.65	16.9	4.42	5.0
Merged-chr2-124627904-3	chr2	124627399	124628399	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	B4A|SINE|B4	17603.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	46.34	29.95	28.67	47.9	53.18	62.7	47.53	50.85	29.98
Merged-chr11-53898394-3	chr11	53897906	53898906	+	960.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-6703.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	8.58	8.75	9.25	12.82	10.73	15.27	9.51	7.52	16.24
Merged-chr14-54474785-2	chr14	54474282	54475282	+	960.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1318.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	10.3	9.22	9.25	10.12	4.67	7.23	0.0	2.65	0.0
Merged-chr8-80943966-2	chr8	80943464	80944464	+	960.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-63445.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	4.0	6.91	3.7	4.05	6.53	3.22	4.22	0.44	3.75
Merged-chr19-14585479-3	chr19	14584981	14585981	+	960.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	11732.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	126.42	128.1	80.47	74.89	63.91	65.91	104.56	112.75	90.56
Merged-chr9-40414578-3	chr9	40414080	40415080	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	RLTR16C_MM|LTR|ERVK	-38163.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	25.74	23.04	28.67	21.59	25.19	29.74	61.26	61.46	21.23
Merged-chr13-95890313-3	chr13	95889817	95890817	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	1605.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	40.04	44.24	43.47	80.97	51.32	53.05	100.34	110.98	71.82
Merged-chr10-121587597-3	chr10	121587104	121588104	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019786)	promoter-TSS (NM_019786)	-810.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	192.21	226.25	117.47	181.5	222.99	114.94	229.19	298.46	131.15
Merged-chr18-82530297-3	chr18	82529795	82530795	+	960.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24168.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	46.91	62.67	49.02	3.37	2.8	2.41	4.22	0.88	2.5
Merged-chr6-135252684-4	chr6	135252207	135253207	+	960.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1629.0	NM_010352	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.0	4.15	0.0	17.54	9.33	14.47	4.22	1.77	3.75
Merged-chr10-108163005-5	chr10	108162456	108163456	+	960.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	intron (NM_027892, intron 1 of 25)	556.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	147.59	151.14	129.49	140.34	142.29	133.43	129.91	138.84	106.79
Merged-chr19-47937634-3	chr19	47937130	47938130	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163267)	promoter-TSS (NM_001163267)	-82.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	30.89	34.56	26.82	33.74	35.45	35.37	41.19	49.08	36.85
Merged-chr13-17977043-3	chr13	17976536	17977536	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16315.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	153.31	180.17	115.62	124.82	152.08	126.19	217.57	249.82	99.3
Merged-chrX-94212908-6	chrX	94212419	94213419	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012010)	promoter-TSS (NM_012010)	-268.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	60.07	43.77	48.1	66.12	55.98	75.56	77.1	66.77	39.35
Merged-chr11-114542326-1	chr11	114541826	114542826	+	960.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93466.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	1.14	0.46	12.95	2.02	0.93	1.61	32.74	14.15	11.24
Merged-chr1-135131223-3	chr1	135130710	135131710	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153383, intron 1 of 36)	intron (NR_153383, intron 1 of 36)	1365.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	15.45	10.6	10.17	16.87	15.39	15.27	15.84	22.99	11.24
Merged-chr7-24481933-3	chr7	24481435	24482435	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153112)	promoter-TSS (NM_153112)	-88.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	8.58	0.92	9.25	5.4	0.93	0.0	1.06	0.0	1.25
Merged-chr7-16043644-3	chr7	16043149	16044149	+	960.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28196.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	206.51	234.08	176.67	176.78	195.0	185.68	172.16	226.39	122.41
Merged-chr12-40310101-2	chr12	40309595	40310595	+	960.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	86731.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	5.72	5.53	12.95	4.72	6.06	0.0	5.28	2.65	3.75
Merged-chr3-75556296-3	chr3	75555802	75556802	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	550.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	193.35	173.25	167.42	159.23	137.62	156.74	208.07	217.1	127.4
Merged-chr6-116756554-3	chr6	116756059	116757059	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39801.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	6.29	2.76	2.77	3.37	5.6	4.82	1.06	2.21	2.5
Merged-chr6-66973291-3	chr6	66972801	66973801	+	960.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-63298.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	12.01	7.83	11.1	8.1	10.26	6.43	8.45	7.07	8.74
Merged-chr19-6340116-3	chr19	6339625	6340625	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001168488, exon 10 of 10)	exon (NM_001168488, exon 10 of 10)	-1035.0	NM_009006	26412.0	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	84.66	82.48	83.25	71.52	47.58	79.58	69.71	116.29	53.71
Merged-chr3-130794996-3	chr3	130794483	130795483	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64585.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	14.87	15.67	35.15	17.54	16.79	41.8	14.79	14.15	25.61
Merged-chr7-28168852-3	chr7	28168342	28169342	+	960.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007991)	promoter-TSS (NM_007991)	-906.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	111.55	94.0	119.32	65.45	83.04	106.9	96.11	112.75	86.18
Merged-chr6-7693131-2	chr6	7692632	7693632	+	960.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012055)	promoter-TSS (NM_012055)	50.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	22.31	13.36	7.4	2.02	2.8	0.0	1.06	8.84	3.75
Merged-chr11-59518410-2	chr11	59517923	59518923	+	960.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11783.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	1.14	2.3	0.0	26.99	24.72	32.15	45.42	35.37	25.61
Merged-chr11-75733394-3	chr11	75732962	75733962	+	960.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 1 of 5)	CpG	575.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	168.18	155.75	164.64	182.85	139.49	179.24	144.7	115.41	114.91
Merged-chr1-138963603-5	chr1	138963122	138964122	+	960.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166501)	promoter-TSS (NM_001166501)	-87.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	207.66	156.21	195.17	247.62	171.21	184.87	306.29	179.52	91.81
Merged-chr1-187216876-3	chr1	187216385	187217385	+	960.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357645, intron 1 of 9)	intron (NM_001357645, intron 1 of 9)	1142.0	NM_001357645	67769.0	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	18.88	22.58	26.82	15.52	18.19	17.68	27.46	17.69	28.1
Merged-chr19-47755135-3	chr19	47754617	47755617	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	40.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	21.74	18.43	14.8	26.31	22.39	21.7	13.73	15.03	12.49
Merged-chr3-90077605-3	chr3	90077096	90078096	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022314, intron 2 of 8)	intron (NM_022314, intron 2 of 8)	-1925.0	NM_001253738	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	8.58	9.68	5.55	12.14	7.0	12.06	6.34	7.52	2.5
Merged-chr18-69576549-3	chr18	69576050	69577050	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	230390.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	94.39	114.74	53.65	114.03	96.57	97.26	94.0	92.41	64.33
Merged-chr13-58478100-3	chr13	58477601	58478601	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-74758.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	165.9	165.42	107.29	198.37	183.8	94.04	153.15	204.72	69.32
Merged-chr6-124957515-3	chr6	124957015	124958015	+	960.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164089)	TTS (NM_001164089)	8023.0	NM_012003	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	59.49	64.51	61.05	69.5	43.85	70.73	86.61	84.01	50.59
Merged-chr7-102223084-3	chr7	102222608	102223608	+	960.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145583)	promoter-TSS (NM_145583)	80.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	50.34	54.37	55.5	45.21	39.65	73.14	83.44	66.77	86.81
Merged-chr10-62530425-3	chr10	62529923	62530923	+	960.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2978.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	12.01	9.22	1.85	14.84	12.6	16.08	3.17	12.38	6.25
Merged-chr6-86660746-2	chr6	86660233	86661233	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	8426.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	14.87	16.13	20.35	30.36	19.13	32.15	41.19	43.77	27.48
Merged-chr10-117724499-1	chr10	117723999	117724999	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13741.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	6.86	4.61	2.77	11.47	2.33	11.25	2.11	6.63	9.99
Merged-chr4-126023825-2	chr4	126023369	126024369	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045561)	promoter-TSS (NR_045561)	-790.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	136.72	207.35	113.77	148.44	189.87	144.68	296.79	415.64	146.76
Merged-chr13-89376282-1	chr13	89375782	89376782	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164354.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	1.14	8.75	5.55	2.7	7.0	6.43	9.51	19.9	8.74
Merged-chr18-34857842-1	chr18	34857342	34858342	+	960.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3365.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	31.46	35.02	33.3	46.56	26.12	42.6	139.42	124.69	68.07
Merged-chr3-69157745-3	chr3	69157245	69158245	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126533)	TTS (NR_126533)	26512.0	NR_126533	381452.0	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	66.93	58.52	37.0	93.11	68.58	98.06	59.15	53.06	28.73
Merged-chr16-92715653-3	chr16	92715137	92716137	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-18308.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	29.17	20.27	17.57	45.88	42.45	50.64	16.9	8.4	23.11
Merged-chr11-116618553-1	chr11	116618053	116619053	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	5699.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	37.76	61.28	60.12	55.33	50.38	53.85	63.37	59.25	45.59
Merged-chr18-66519399-2	chr18	66518912	66519912	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15234.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	5.15	8.29	3.7	6.07	7.0	1.61	11.62	8.4	0.0
Merged-chr7-126739683-3	chr7	126739159	126740159	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19967.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	26.89	22.58	5.55	72.87	98.9	98.06	102.45	83.57	70.57
Merged-chr7-142068787-1	chr7	142068287	142069287	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7753.0	NM_028308	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	2.86	2.3	0.0	4.72	3.27	7.23	5.28	0.88	0.0
Merged-chr7-100121083-3	chr7	100120621	100121621	+	960.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133692, intron 1 of 11)	CpG	379.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	148.73	138.24	155.39	138.32	121.76	114.14	99.28	103.47	87.43
Merged-chr12-25437714-1	chr12	25437214	25438214	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	308540.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.57	3.69	9.25	6.07	1.4	4.82	5.28	0.44	6.25
Merged-chrX-13503220-1	chrX	13502720	13503720	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35548.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	36.04	29.95	24.05	22.27	23.79	27.33	19.01	15.03	26.23
Merged-chr10-13469173-1	chr10	13468673	13469673	+	960.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	5223.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	6.29	11.98	11.1	8.1	7.93	5.63	5.28	7.52	6.25
Merged-chr10-93945569-3	chr10	93945069	93946069	+	959.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18294.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	14.87	8.75	0.0	8.1	7.46	4.02	152.09	119.83	66.82
Merged-chr2-128065756-3	chr2	128065263	128066263	+	959.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	RLTR16|LTR|ERVK	-60275.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	7.44	3.69	6.47	9.45	7.46	11.25	14.79	7.52	3.75
Merged-chr17-57219376-3	chr17	57218865	57219865	+	959.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009778, intron 19 of 40)	B3A|SINE|B2	-2137.0	NR_105944	102465591.0		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	2.86	1.84	0.0	12.14	0.93	4.82	3.17	2.65	6.25
Merged-chr5-16538202-3	chr5	16537723	16538723	+	959.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15272.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	15.45	10.14	7.4	17.54	7.93	10.45	12.67	15.03	9.99
Merged-chr18-89607628-3	chr18	89607131	89608131	+	959.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039173, intron 1 of 7)	B4A|SINE|B4	161505.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	6.29	7.37	12.02	2.7	3.73	7.23	2.11	4.42	3.75
Merged-chr16-90323120-3	chr16	90322618	90323618	+	959.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38615.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	5.15	3.23	0.0	4.72	4.2	3.22	3.17	0.88	2.5
Merged-chr9-50775343-3	chr9	50774854	50775854	+	959.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045601, exon 1 of 14)	non-coding (NR_045601, exon 1 of 14)	129.0	NR_045601	102580.0	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	66.93	38.71	20.35	62.07	44.32	36.17	85.55	57.04	28.1
Merged-chr13-92977633-2	chr13	92977142	92978142	+	959.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	-95662.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	13.16	13.36	22.2	1.35	3.27	6.43	50.7	31.39	20.61
Merged-chr11-8567342-3	chr11	8566837	8567837	+	959.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	97198.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	156.74	164.96	120.24	130.9	113.36	164.78	103.51	127.79	61.2
Merged-chr1-91096671-3	chr1	91096157	91097157	+	959.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	43213.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	28.6	45.16	40.7	27.66	20.06	47.42	20.07	19.9	16.86
Merged-chr2-19344699-3	chr2	19344153	19345153	+	959.849182	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126563, exon 1 of 4)	non-coding (NR_126563, exon 1 of 4)	336.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	57.78	61.75	50.87	71.52	71.38	57.87	66.54	53.5	43.72
Merged-chr17-34171346-2	chr17	34170841	34171841	+	959.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15989.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	34.32	23.04	12.95	7.42	14.0	6.43	22.18	15.92	13.74
Merged-chr7-34176458-2	chr7	34175954	34176954	+	959.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7925.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	23.45	14.75	17.57	22.27	11.2	19.29	14.79	16.36	11.87
Merged-chr5-124026625-3	chr5	124026123	124027123	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	5637.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	56.63	50.69	32.37	60.72	25.66	30.54	100.34	68.54	24.36
Merged-chr3-31100204-3	chr3	31099698	31100698	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	5140.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	64.07	96.3	61.97	74.22	84.44	68.32	145.75	187.92	108.67
Merged-chr3-41552973-1	chr3	41552473	41553473	+	959.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_001130184	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	9.15	8.75	9.25	18.22	11.2	8.84	6.34	6.63	3.75
Merged-chr5-92487467-3	chr5	92486956	92487956	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	18201.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	156.17	188.0	121.17	159.23	160.01	131.02	156.32	202.07	107.42
Merged-chr19-37206904-4	chr19	37206436	37207436	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164337)	promoter-TSS (NM_001164337)	535.0	NM_198300	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	201.36	166.8	135.97	144.39	142.29	148.7	219.69	210.91	118.66
Merged-chr7-30282940-3	chr7	30282403	30283403	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	RMER19B|LTR|ERVK	-2482.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	61.21	53.91	39.77	88.39	70.91	111.73	7.39	12.38	5.0
Merged-chr16-17410426-3	chr16	17409913	17410913	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-4099.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	96.11	108.28	101.74	114.7	95.63	100.47	58.09	68.54	33.72
Merged-chr13-21735007-3	chr13	21734520	21735520	+	959.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178210)	promoter-TSS (NM_178210)	-14.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	26.89	19.35	34.22	33.06	22.39	28.13	40.14	48.2	49.96
Merged-chr6-38913115-3	chr6	38912605	38913605	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5881.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	20.02	7.83	7.4	23.62	15.86	11.25	17.96	13.71	7.49
Merged-chr7-7210028-3	chr7	7209522	7210522	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145577)	promoter-TSS (NM_145577)	-24.0	NM_145577	232855.0	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	8.58	12.9	19.42	14.17	11.66	22.51	11.62	15.03	8.12
Merged-chr14-103342030-3	chr14	103341518	103342518	+	959.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	4782.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	69.22	72.8	42.55	61.4	45.25	59.48	78.16	91.09	60.58
Merged-chr14-52020693-3	chr14	52020191	52021191	+	959.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253694)	promoter-TSS (NM_001253694)	42.0	NM_001253696	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	188.21	227.63	148.92	201.74	190.8	154.33	215.46	243.63	151.14
Merged-chr19-37472818-3	chr19	37472334	37473334	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	7580.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	11.44	8.75	3.7	20.24	9.8	6.43	17.96	13.71	7.49
Merged-chr19-47138318-3	chr19	47137816	47138816	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133746)	promoter-TSS (NM_133746)	-22.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	90.96	116.12	108.22	123.47	121.29	135.04	139.42	158.3	107.42
Merged-chrX-36101052-3	chrX	36100564	36101564	+	959.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11044.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	83.52	105.06	44.4	60.05	44.32	44.21	57.03	46.43	29.35
Merged-chr8-84709322-3	chr8	84708780	84709780	+	959.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 9 of 9)	intron (NM_001081982, intron 9 of 9)	7823.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	18.31	15.67	24.97	12.82	10.73	40.99	27.46	15.03	29.98
Merged-chr3-152122310-2	chr3	152121815	152122815	+	959.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	43585.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	9.72	5.99	3.7	11.47	10.73	16.08	2.11	0.88	1.87
Merged-chr7-19203171-3	chr7	19202664	19203664	+	959.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 20 of 21)	intron (NM_001347582, intron 20 of 21)	-9374.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	13.73	11.52	5.55	8.1	8.86	3.22	28.52	14.15	12.49
Merged-chr14-30581352-1	chr14	30580852	30581852	+	959.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9203.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	1.72	4.61	3.7	2.7	1.87	2.41	63.37	75.17	29.35
Merged-chr6-108445221-3	chr6	108444709	108445709	+	959.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-44534.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	74.37	56.68	35.15	123.47	120.36	94.04	79.21	71.19	41.22
Merged-chr11-94760487-3	chr11	94760000	94761000	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105561, intron 1 of 4)	intron (NM_001105561, intron 1 of 4)	682.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	132.14	142.84	63.82	130.22	146.48	118.96	192.23	191.02	68.7
Merged-chr13-52188813-3	chr13	52188300	52189300	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92059.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	25.17	16.59	7.4	29.01	22.39	29.74	30.63	12.82	26.85
Merged-chr17-80180188-3	chr17	80179694	80180694	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	27111.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	4.0	4.61	0.0	2.7	2.33	3.22	0.0	3.1	2.5
Merged-chr2-155369699-3	chr2	155369198	155370198	+	959.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-12158.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	68.65	58.98	61.05	39.13	35.92	38.58	46.47	50.85	29.35
Merged-chr10-14048663-3	chr10	14048175	14049175	+	959.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	82296.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	16.59	6.45	5.55	14.17	4.67	7.23	12.67	4.42	4.37
Merged-chr13-17804273-3	chr13	17803749	17804749	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081058, exon 1 of 14)	exon (NM_001081058, exon 1 of 14)	848.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	249.42	253.43	384.78	226.03	218.33	251.59	270.38	170.23	215.46
Merged-chr2-78054131-3	chr2	78053614	78054614	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	MER34A|LTR|ERV1	2937.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	8.58	8.29	2.77	8.77	7.46	9.65	3.17	2.65	1.25
Merged-chr2-114233252-3	chr2	114232754	114233754	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31822.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	14.87	26.26	14.8	22.27	20.53	16.88	14.79	14.59	5.0
Merged-chr8-86861740-3	chr8	86861234	86862234	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030563, exon 2 of 7)	exon (NM_030563, exon 2 of 7)	23524.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	52.06	61.28	42.55	61.4	48.52	35.37	55.98	48.2	58.08
Merged-chr7-44998714-3	chr7	44998223	44999223	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016849, exon 2 of 8)	exon (NM_016849, exon 2 of 8)	1075.0	NM_016849	54131.0	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	35.47	60.82	86.02	64.77	49.92	57.07	101.39	95.95	72.45
Merged-chr2-84670766-3	chr2	84670270	84671270	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037279)	promoter-TSS (NM_001037279)	-62.0	NM_001037279	72657.0	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	50.34	44.7	50.87	50.6	49.92	33.76	62.31	67.21	30.6
Merged-chr16-3699454-3	chr16	3698971	3699971	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18653.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	16.59	9.68	5.55	20.24	30.79	53.05	44.36	46.87	34.97
Merged-chr13-98693604-3	chr13	98693117	98694117	+	959.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1214.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	150.45	147.91	92.5	184.87	165.61	120.57	207.01	237.0	63.7
Merged-chr12-69682050-5	chr12	69681524	69682524	+	959.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135559)	promoter-TSS (NM_001135559)	-172.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	93.24	110.59	155.39	120.77	116.63	108.51	124.63	100.37	83.06
Merged-chr1-155384094-3	chr1	155383585	155384585	+	959.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 2 of 14)	intron (NM_011273, intron 2 of 14)	33359.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	126.42	107.82	68.45	76.92	63.45	36.97	116.18	133.53	29.98
Merged-chr10-60745087-3	chr10	60744576	60745576	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	7706.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	29.75	29.49	23.12	45.21	32.19	41.8	27.46	48.2	26.23
Merged-chr10-19088596-3	chr10	19088083	19089083	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53166.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	28.6	19.35	3.7	22.94	15.86	16.08	21.12	7.96	9.99
Merged-chr2-27289210-3	chr2	27288700	27289700	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 11 of 29)	intron (NR_133905, intron 11 of 29)	-41897.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	8.58	4.15	11.1	14.84	2.8	9.65	8.45	3.54	6.25
Merged-chr9-44512221-3	chr9	44511723	44512723	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030256)	TTS (NM_030256)	13087.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	42.9	41.93	31.45	39.13	33.12	62.7	40.14	36.7	43.09
Merged-chr18-77800121-3	chr18	77799630	77800630	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-3740.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	65.21	102.29	40.7	79.62	70.44	92.44	100.34	91.97	29.98
Merged-chr12-79725088-3	chr12	79724592	79725592	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	199641.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	38.9	44.7	14.8	39.13	20.06	19.29	23.24	29.18	12.49
Merged-chrX-96238489-3	chrX	96238001	96239001	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	33.75	39.63	12.02	27.66	15.39	36.97	22.18	22.99	27.48
Merged-chr17-26534900-3	chr17	26534385	26535385	+	959.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26413.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	489.11	490.27	362.58	448.69	448.78	401.89	420.36	557.57	276.04
Merged-chr10-25443795-2	chr10	25443297	25444297	+	959.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013511, exon 3 of 20)	exon (NM_013511, exon 3 of 20)	35429.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	34.9	23.5	30.52	26.99	29.39	38.58	12.67	22.11	21.23
Merged-chr11-101657908-2	chr11	101657384	101658384	+	959.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-7657.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	220.81	175.1	108.22	233.45	179.61	142.27	240.81	244.52	79.94
Merged-chr19-9071639-3	chr19	9071156	9072156	+	959.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104460, intron 6 of 6)	intron (NR_104460, intron 6 of 6)	16300.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	9.15	8.29	3.7	9.45	6.53	17.68	9.51	7.96	3.75
Merged-chr1-191288940-3	chr1	191288434	191289434	+	959.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29184.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	17.16	6.45	1.85	9.45	2.33	4.82	7.39	3.54	0.0
Merged-chr10-118407030-3	chr10	118406530	118407530	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34016.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	5.72	6.45	0.92	7.42	3.73	3.22	3.17	8.84	1.87
Merged-chr13-108015325-3	chr13	108014855	108015855	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29119.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	4.0	2.76	7.4	6.75	11.2	6.43	8.45	4.86	6.25
Merged-chrX-36107688-3	chrX	36107196	36108196	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4412.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	53.77	44.24	17.57	22.94	15.39	20.9	36.97	36.7	11.87
Merged-chr5-76522167-3	chr5	76521657	76522657	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7150.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	34.32	54.37	49.02	31.71	29.39	46.62	42.25	44.66	23.11
Merged-chr11-106613970-3	chr11	106613471	106614471	+	959.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1041.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	367.83	259.88	167.42	359.62	242.58	186.48	362.27	533.25	164.25
Merged-chrX-49116678-3	chrX	49116171	49117171	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271448, intron 2 of 14)	Lx7|LINE|L1	171571.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	18.88	21.2	26.82	20.92	12.13	12.86	5.28	16.36	8.74
Merged-chr7-145025600-2	chr7	145025089	145026089	+	959.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85664.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.0	1.84	0.0	1.35	0.93	0.0	3.17	0.44	8.74
Merged-chr8-27175732-3	chr8	27175228	27176228	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1082.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	32.04	34.1	20.35	35.09	27.52	40.19	36.97	15.48	15.61
Merged-chr9-116111817-2	chr9	116111315	116112315	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	URR1B|DNA|hAT-Charlie	63548.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	33.18	37.32	26.82	56.68	33.59	57.87	3.17	5.75	11.24
Merged-chr2-10080431-4	chr2	10079883	10080883	+	959.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	127.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	239.12	297.67	215.51	255.72	372.27	213.81	285.17	365.67	154.88
Merged-chr9-78194097-3	chr9	78193608	78194608	+	959.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010357, intron 1 of 6)	B2_Mm2|SINE|B2	2142.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	4.58	3.69	1.85	5.4	0.93	0.0	5.28	3.54	3.75
Merged-chr13-30549051-3	chr13	30548558	30549558	+	959.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	5.15	1.84	0.0	3.37	5.13	2.41	4.22	1.33	5.0
Merged-chr17-65745070-3	chr17	65744585	65745585	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	27667.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	10.3	9.22	7.4	23.62	7.93	17.68	32.74	25.65	17.49
Merged-chr17-45033732-3	chr17	45033229	45034229	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178652, intron 7 of 11)	intron (NM_178652, intron 7 of 11)	-152844.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	16.02	9.22	14.8	31.71	25.19	19.29	19.01	22.55	12.49
Merged-chr4-101198515-3	chr4	101198022	101199022	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	B1F2|SINE|Alu	66760.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	20.02	18.89	17.57	22.94	14.93	21.7	14.79	10.61	11.24
Merged-chr3-148933320-3	chr3	148932824	148933824	+	959.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	21311.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	12.59	7.83	12.95	10.12	12.6	18.49	13.73	5.75	2.5
Merged-chr4-57027231-2	chr4	57026721	57027721	+	959.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-36830.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	19.45	12.9	7.4	18.89	18.66	19.29	4.22	4.86	0.62
Merged-chr10-117320795-3	chr10	117320297	117321297	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27929.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	24.6	22.58	25.9	18.89	15.39	7.23	17.96	15.03	21.23
Merged-chr9-113780267-3	chr9	113779766	113780766	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-13064.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	173.33	212.88	88.8	138.99	156.28	106.1	90.83	140.17	79.94
Merged-chr17-50872781-3	chr17	50872270	50873270	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 14 of 21)	intron (NM_028162, intron 14 of 21)	174089.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	10.3	6.91	12.95	9.45	10.73	12.86	11.62	7.07	7.49
Merged-chr12-35827120-3	chr12	35826633	35827633	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98488.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	3.43	11.52	11.1	8.77	11.2	11.25	7.39	4.86	1.25
Merged-chr17-24654156-3	chr17	24653668	24654668	+	959.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3863.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	6.29	9.68	5.55	8.1	3.73	4.82	8.45	6.63	1.25
Merged-chr6-99655695-3	chr6	99655196	99656196	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	11075.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	82.95	80.64	66.6	75.57	37.32	46.62	72.88	62.35	42.47
Merged-chr4-139236231-3	chr4	139235710	139236710	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	42099.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	82.38	75.57	31.45	65.45	40.12	58.68	74.99	75.61	50.59
Merged-chr7-46847039-3	chr7	46846564	46847564	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	-18.0	NM_001136069	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	57.78	66.81	42.55	79.62	80.24	68.32	104.56	76.49	49.96
Merged-chr4-150217260-3	chr4	150216769	150217769	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-16134.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	24.6	12.9	49.95	24.29	10.73	25.72	27.46	15.92	26.23
Merged-chr5-65561286-3	chr5	65560793	65561793	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310618, intron 1 of 4)	RLTR26_Mus|LTR|ERVK	24048.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	25.74	23.5	14.8	43.86	23.33	12.86	28.52	21.67	18.74
Merged-chr9-83568307-3	chr9	83567814	83568814	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	19976.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.0	6.45	3.7	8.77	3.27	4.82	12.67	4.42	1.25
Merged-chr13-75824783-3	chr13	75824298	75825298	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15087.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	22.31	17.51	20.35	20.24	21.46	32.96	20.07	20.34	16.86
Merged-chr2-160220739-3	chr2	160220241	160221241	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106753.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	23.45	24.88	22.2	39.13	23.79	42.6	26.4	26.09	27.48
Merged-chr7-45097699-3	chr7	45097217	45098217	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	intron (NM_001357117, intron 4 of 6)	-5504.0	NM_001355045	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	56.63	54.83	53.65	68.15	69.98	91.63	46.47	49.08	53.08
Merged-chrX-85838730-3	chrX	85838229	85839229	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12068.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	6.29	7.83	1.85	5.4	2.8	20.09	9.51	2.21	3.75
Merged-chr17-50588163-3	chr17	50587661	50588661	+	959.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	78614.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	53.77	39.63	36.07	39.13	27.52	53.05	43.3	37.14	26.85
Merged-chr17-21370549-3	chr17	21370055	21371055	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9C_I-int|LTR|ERVK	-13193.0	NM_172486	210503.0	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	5.72	3.23	1.85	5.4	5.6	6.43	1.06	2.21	2.5
Merged-chr16-37682715-3	chr16	37682105	37683105	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28237.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	5.15	8.29	1.85	2.7	1.87	4.02	12.67	5.31	6.87
Merged-chr16-75767841-3	chr16	75767355	75768355	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1037.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	205.94	316.1	151.69	140.34	160.48	114.94	159.48	233.02	113.66
Merged-chr6-38866029-3	chr6	38865539	38866539	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	10151.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	14.87	23.96	12.95	23.62	17.26	26.53	16.9	17.69	11.24
Merged-chr8-19601772-3	chr8	19601257	19602257	+	959.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106660.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	3.43	11.06	10.17	10.12	8.4	12.86	11.62	14.15	11.24
Merged-chr2-120970690-3	chr2	120970176	120971176	+	959.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009461)	promoter-TSS (NM_009461)	39.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	85.24	68.66	48.1	73.54	64.38	59.48	55.98	46.43	28.73
Merged-chr6-8003990-2	chr6	8003492	8004492	+	959.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	158768.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	28.03	21.2	3.7	3.37	7.93	1.61	3.17	2.21	2.5
Merged-chr5-124116155-3	chr5	124115701	124116701	+	959.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144509)	promoter-TSS (NM_144509)	93.0	NM_144509	65105.0	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	50.91	43.31	54.57	59.38	40.59	72.34	82.38	43.33	53.71
Merged-chr10-89444402-3	chr10	89443908	89444908	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284344)	promoter-TSS (NM_001284344)	-441.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	45.76	51.61	53.65	66.8	64.84	50.64	57.03	72.07	37.47
Merged-chr2-76690992-3	chr2	76690507	76691507	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031256, intron 6 of 7)	intron (NM_031256, intron 6 of 7)	15692.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	5.15	17.97	8.32	10.8	13.53	19.29	10.56	7.96	14.99
Merged-chr6-87038408-3	chr6	87037904	87038904	+	959.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4442.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	34.9	22.12	15.72	27.66	8.4	12.86	60.2	57.92	25.61
Merged-chr15-9463800-4	chr15	9463295	9464295	+	959.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029341, intron 4 of 4)	intron (NM_029341, intron 4 of 4)	27767.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	5.15	5.99	3.7	8.77	3.73	1.61	8.45	7.07	3.75
Merged-chr1-171817155-3	chr1	171816665	171817665	+	959.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22532.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	34.9	40.55	20.35	51.28	29.86	58.68	36.97	27.41	7.49
Merged-chr12-55490515-4	chr12	55490048	55491048	+	959.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010907, exon 5 of 6)	exon (NM_010907, exon 5 of 6)	2099.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	268.29	317.02	215.51	268.54	215.53	235.51	314.74	364.35	177.37
Merged-chr7-58686800-3	chr7	58686297	58687297	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	MTD|LTR|ERVL-MaLR	28595.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	12.01	11.98	5.55	3.37	6.06	0.8	8.45	10.17	9.99
Merged-chr9-83553940-3	chr9	83553387	83554387	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	5549.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	37.18	42.85	19.42	53.98	25.66	44.21	36.97	34.49	22.48
Merged-chr9-14725251-3	chr9	14724752	14725752	+	959.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177905, intron 8 of 18)	intron (NM_177905, intron 8 of 18)	15481.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	17.16	13.36	12.95	10.12	5.13	6.43	26.4	11.94	5.62
Merged-chr3-107205329-2	chr3	107204827	107205827	+	959.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	16405.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	1.14	0.92	0.0	6.07	0.47	1.61	5.28	3.54	8.74
Merged-chr13-21479184-3	chr13	21478664	21479664	+	959.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039115, exon 1 of 3)	exon (NM_001039115, exon 1 of 3)	315.0	NM_001039115	544922.0	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272	zinc finger with KRAB and SCAN domains 4	protein-coding	38.33	26.73	33.3	38.46	24.26	45.82	17.96	7.07	8.74
Merged-chr9-64704676-3	chr9	64704173	64705173	+	959.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	intron (NM_001134399, intron 23 of 24)	33083.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	93.24	108.75	69.37	111.33	93.77	64.3	90.83	63.23	28.73
Merged-chr12-99965761-3	chr12	99965262	99966262	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146037, exon 2 of 3)	5' UTR (NM_146037, exon 2 of 3)	1263.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	146.45	140.08	150.77	190.95	199.2	192.11	171.1	222.41	122.41
Merged-chr2-11771908-3	chr2	11771420	11772420	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348235, intron 1 of 20)	intron (NM_001348235, intron 1 of 20)	5665.0	NM_001348234	50755.0	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	32.04	42.85	51.8	26.99	29.86	22.51	31.69	26.97	50.59
Merged-chr10-79793588-3	chr10	79793098	79794098	+	959.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161747)	promoter-TSS (NM_001161747)	26.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	16.02	7.37	19.42	10.8	6.53	20.9	14.79	10.61	12.49
Merged-chr12-92928372-2	chr12	92927870	92928870	+	959.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	516453.0	NR_126436	75295.0	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	3.43	4.15	3.7	10.8	8.86	3.22	11.62	16.8	13.12
Merged-chr17-36187748-2	chr17	36187251	36188251	+	959.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008208, intron 3 of 5)	intron (NM_008208, intron 3 of 5)	2400.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	6.29	2.3	11.1	4.72	4.2	4.82	2.11	1.33	1.25
Merged-chr6-127574226-2	chr6	127573722	127574722	+	959.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3753.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	11.44	9.22	30.52	15.52	12.13	12.06	24.29	20.78	16.24
Merged-chr15-97925021-3	chr15	97924536	97925536	+	959.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16740.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	30.89	34.56	24.05	21.59	14.0	14.47	35.91	29.63	18.74
Merged-chr2-49554927-3	chr2	49554374	49555374	+	959.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64440.0	NM_008449	16574.0	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	17.16	11.06	4.62	7.42	4.2	14.47	10.56	3.54	5.62
Merged-chr13-43779181-3	chr13	43778658	43779658	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5954.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	108.12	58.06	62.9	109.98	49.45	76.36	78.16	68.98	43.72
Merged-chr15-41765050-3	chr15	41764501	41765501	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-23994.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	24.03	17.05	2.77	21.59	14.93	9.65	11.62	8.84	8.74
Merged-chr18-53250884-3	chr18	53250375	53251375	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	5213.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	208.8	215.19	148.92	283.38	243.05	143.07	245.04	293.16	164.25
Merged-chr12-54844604-3	chr12	54844117	54845117	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18260.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	17.16	7.83	11.1	9.45	8.4	19.29	21.12	19.01	14.36
Merged-chr8-125756761-3	chr8	125756240	125757240	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 32 of 33)	intron (NM_175561, intron 32 of 33)	22537.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	24.03	20.27	30.52	44.53	48.98	55.46	41.19	30.07	31.23
Merged-chr13-45031926-3	chr13	45031432	45032432	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29836.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	90.96	83.86	60.12	100.53	97.97	71.54	89.78	94.62	33.1
Merged-chrX-106139618-3	chrX	106139100	106140100	+	959.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3675.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	56.06	74.19	48.1	60.05	42.45	45.01	43.3	57.92	23.11
Merged-chr16-10950743-2	chr16	10950233	10951233	+	959.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35936.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	5.72	11.98	11.1	12.14	5.13	5.63	13.73	10.17	7.49
Merged-chr2-59240782-1	chr2	59240282	59241282	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	79932.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	148.73	104.6	80.47	138.99	69.04	70.73	108.79	107.89	29.35
Merged-chr17-35048555-3	chr17	35048043	35049043	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1700.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	69.79	68.2	53.65	46.56	39.19	45.82	65.48	70.3	52.46
Merged-chr10-105490838-1	chr10	105490338	105491338	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	83641.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.14	5.53	5.55	2.02	2.8	4.82	5.28	3.1	4.37
Merged-chr14-14015160-1	chr14	14014660	14015660	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139227, intron 3 of 11)	intron (NM_139227, intron 3 of 11)	2669.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	6.86	12.44	19.42	7.42	12.6	17.68	9.51	4.86	10.62
Merged-chr6-35178034-1	chr6	35177534	35178534	+	959.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027513, intron 1 of 42)	CpG	418.0	NM_027513	70699.0	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	112.12	57.14	47.17	133.59	101.7	67.52	147.87	76.49	38.1
Merged-chr5-125383986-3	chr5	125383484	125384484	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	6033.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	12.59	12.44	21.27	12.82	7.0	19.29	8.45	18.13	16.24
Merged-chr16-23987378-1	chr16	23986878	23987878	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	(T)n|Simple_repeat|Simple_repeat	1474.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	60.64	49.3	43.47	46.56	55.05	80.38	66.54	29.63	43.72
Merged-chr2-60283434-3	chr2	60282919	60283919	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1065.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	170.47	208.74	169.27	215.91	176.81	223.45	218.63	244.96	153.01
Merged-chr12-24780795-1	chr12	24780295	24781295	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50804.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	3.43	8.75	16.65	8.77	12.13	28.13	4.22	2.65	1.87
Merged-chr2-102895198-1	chr2	102894698	102895698	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	6467.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	13.16	7.37	25.9	27.66	18.66	32.96	29.57	15.03	21.86
Merged-chr5-64412541-3	chr5	64412055	64413055	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55387.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	18.88	25.8	29.6	27.66	20.53	22.51	21.12	19.46	18.11
Merged-chr14-99763543-1	chr14	99763043	99764043	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	386253.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.86	4.15	2.77	2.02	2.33	4.02	7.39	4.86	5.0
Merged-chr2-132180872-1	chr2	132180372	132181372	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35552.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.29	14.28	14.8	13.49	10.73	24.92	11.62	13.27	21.23
Merged-chr2-118972899-3	chr2	118972390	118973390	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	46393.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	14.87	5.07	1.85	4.72	5.6	0.0	9.51	2.65	5.62
Merged-chr19-59350689-2	chr19	59350189	59351189	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4909.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	5.15	5.53	3.7	5.4	3.27	4.82	3.17	1.33	1.25
Merged-chrX-93644153-1	chrX	93643653	93644653	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10710.0	NM_177546	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	22.31	21.2	20.35	28.34	20.99	25.72	29.57	35.37	17.49
Merged-chr5-146794328-3	chr5	146793797	146794797	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	(CCCCAG)n|Simple_repeat|Simple_repeat	659.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	103.54	95.38	133.19	97.83	65.78	110.12	105.62	66.33	82.44
Merged-chr2-120571336-2	chr2	120570835	120571835	+	959.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	ORR1D1|LTR|ERVL-MaLR	3664.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	60.64	60.82	35.15	59.38	48.52	82.79	27.46	33.6	52.46
Merged-chr13-5424632-1	chr13	5424132	5425132	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	433460.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.58	17.05	13.87	18.22	10.73	45.82	16.9	5.31	11.24
Merged-chr9-53764895-1	chr9	53764395	53765395	+	959.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-6640.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	2.29	3.23	0.0	4.05	1.87	0.0	4.22	2.65	2.5
Merged-chr17-56220024-3	chr17	56219529	56220529	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_172624	224897.0	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	24.03	24.42	45.32	17.54	19.59	45.01	47.53	34.49	39.97
Merged-chr10-19012097-3	chr10	19011633	19012633	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-170.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	94.39	80.18	41.62	34.41	31.26	20.9	72.88	66.77	53.71
Merged-chr10-67644407-3	chr10	67643925	67644925	+	958.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72466.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	135.0	87.09	65.67	91.76	77.44	89.22	98.23	120.71	72.45
Merged-chr10-67683788-3	chr10	67683291	67684291	+	958.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111832.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	29.75	21.66	10.17	36.43	25.66	17.68	16.9	18.13	1.87
Merged-chr16-97478852-3	chr16	97478371	97479371	+	958.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 3 of 7)	intron (NM_020622, intron 3 of 7)	-15965.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	37.76	28.11	24.05	14.17	12.13	20.9	28.52	38.91	22.48
Merged-chr19-17346411-2	chr19	17345913	17346913	+	958.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-6908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	62.35	77.41	37.92	57.35	52.25	36.97	23.24	37.58	30.6
Merged-chr15-73622076-3	chr15	73621568	73622568	+	958.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	2676.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	50.91	74.19	49.95	56.68	54.11	95.65	64.43	81.8	84.94
Merged-chr11-20403671-3	chr11	20403179	20404179	+	958.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-70966.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.0	4.61	1.85	6.75	6.06	0.0	5.28	10.17	3.75
Merged-chr10-120166032-3	chr10	120165531	120166531	+	958.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 7 of 11)	intron (NM_001359184, intron 7 of 11)	35566.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	18.31	10.14	5.55	6.75	2.8	4.02	48.58	22.99	11.87
Merged-chr1-155972523-3	chr1	155972082	155973082	+	958.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039184, intron 1 of 37)	intron (NM_001039184, intron 1 of 37)	673.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	177.91	185.7	180.37	184.2	155.35	182.46	192.23	152.99	131.78
Merged-chr1-57394179-2	chr1	57393682	57394682	+	958.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037742, intron 3 of 7)	intron (NM_001037742, intron 3 of 7)	-12366.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	10.3	13.36	6.47	10.8	8.4	17.68	10.56	10.17	9.99
Merged-chr1-128020529-3	chr1	128020026	128021026	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 6 of 20)	L1ME1|LINE|L1	81945.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	12.59	9.68	9.25	22.94	15.39	16.08	4.22	11.05	10.62
Merged-chr2-91444660-3	chr2	91444144	91445144	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311144)	promoter-TSS (NM_001311144)	70.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	10.87	8.29	13.87	10.8	7.93	6.43	13.73	14.15	5.62
Merged-chr10-112990943-3	chr10	112990437	112991437	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61911.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	30.32	54.83	27.75	35.76	49.45	42.6	59.15	36.26	24.36
Merged-chr2-17896203-3	chr2	17895702	17896702	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	100756.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	10.87	2.3	1.85	0.67	2.8	2.41	8.45	0.88	2.5
Merged-chr11-96873274-1	chr11	96872774	96873774	+	958.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22881.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	7.44	3.23	1.85	25.64	16.33	26.53	39.08	27.41	41.22
Merged-chr5-118638115-1	chr5	118637615	118638615	+	958.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	77396.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.86	6.91	9.25	8.77	6.53	10.45	6.34	1.77	2.5
Merged-chr9-82829255-3	chr9	82828752	82829752	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022986)	promoter-TSS (NM_022986)	-554.0	NM_022986	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	55.49	30.41	24.05	77.59	51.78	24.92	67.6	47.75	24.98
Merged-chr2-45110389-3	chr2	45109888	45110888	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-11.0	NM_001355291	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	211.66	229.93	162.79	213.89	184.27	217.83	277.78	248.94	210.47
Merged-chr7-139219264-3	chr7	139218768	139219768	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-5961.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	21.17	21.66	16.65	34.41	31.26	21.7	28.52	27.86	11.24
Merged-chr16-21339500-3	chr16	21338996	21339996	+	958.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6140.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	37.76	30.87	24.97	31.71	20.99	53.85	41.19	38.91	34.97
Merged-chr1-167393824-3	chr1	167393285	167394285	+	958.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025569)	promoter-TSS (NM_025569)	12.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	22.88	35.94	24.05	49.25	30.32	26.53	34.85	47.75	15.61
Merged-chr2-35442258-3	chr2	35441791	35442791	+	958.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19158.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	96.11	108.28	103.59	64.1	53.18	65.11	62.31	46.87	61.2
Merged-chr10-25119288-3	chr10	25118795	25119795	+	958.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80875.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.29	6.91	0.0	12.82	7.0	11.25	11.62	6.63	5.0
Merged-chr14-70823284-3	chr14	70822781	70823781	+	958.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29652.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	28.03	29.03	24.97	19.57	14.0	20.9	19.01	13.27	7.49
Merged-chr2-155309529-5	chr2	155308929	155309929	+	958.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004721, intron 7 of 11)	intron (NM_001004721, intron 7 of 11)	33065.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	144.16	112.89	80.47	158.56	76.04	97.26	143.64	149.01	104.3
Merged-chr7-35123017-2	chr7	35122548	35123548	+	958.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3755.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	33.18	13.36	26.82	18.22	9.8	19.29	16.9	10.17	16.24
Merged-chr6-17770754-3	chr6	17770266	17771266	+	958.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	21596.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	31.46	25.8	21.27	34.41	20.06	24.11	49.64	39.35	33.72
Merged-chr4-115850147-2	chr4	115849659	115850659	+	958.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355174, intron 2 of 11)	intron (NM_001355174, intron 2 of 11)	10961.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	22.31	22.58	15.72	26.31	23.33	26.53	23.24	10.17	18.11
Merged-chr2-73038619-2	chr2	73038112	73039112	+	958.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58166.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	15.45	5.99	8.32	43.18	27.99	40.99	65.48	35.82	25.61
Merged-chr12-111557740-3	chr12	111557251	111558251	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16651.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	26.89	10.14	9.25	16.19	5.6	6.43	7.39	18.13	7.49
Merged-chr6-47979144-3	chr6	47978645	47979645	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25755.0	NM_178898	101197.0	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	7.44	5.07	13.87	3.37	2.33	5.63	2.11	3.1	1.25
Merged-chr11-69934331-3	chr11	69933824	69934824	+	958.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1575.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	4.0	5.07	1.85	6.07	4.2	1.61	2.11	3.98	2.5
Merged-chr11-74897216-3	chr11	74896719	74897719	+	958.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177325)	promoter-TSS (NM_177325)	-139.0	NM_197943	97761.0	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	72.08	40.55	33.3	91.09	43.39	57.07	44.36	40.24	33.1
Merged-chr3-106486195-5	chr3	106485683	106486683	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033207)	promoter-TSS (NR_033207)	143.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	108.12	85.25	104.52	134.27	87.24	106.9	79.21	82.24	47.46
Merged-chr15-8705081-3	chr15	8704582	8705582	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	5725.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	17.16	11.06	23.12	12.14	9.8	4.82	9.51	11.5	6.25
Merged-chr7-44832321-3	chr7	44831818	44832818	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053074)	TTS (NM_053074)	-3970.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	32.04	30.41	46.25	24.96	26.59	50.64	38.02	36.26	28.73
Merged-chr9-16313472-3	chr9	16312966	16313966	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	ID_B1|SINE|B4	64765.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	32.04	24.42	17.57	41.16	39.19	24.11	28.52	28.74	18.74
Merged-chr7-4493010-3	chr7	4492512	4493512	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	8668.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	22.31	21.66	14.8	25.64	13.53	39.39	19.01	11.05	10.62
Merged-chr5-92398363-3	chr5	92397859	92398859	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181728, intron 2 of 7)	intron (NM_181728, intron 2 of 7)	10225.0	NM_001310665	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	3.43	3.23	7.4	5.4	0.47	3.22	5.28	3.1	1.25
Merged-chr18-80739073-3	chr18	80738579	80739579	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 27 of 28)	intron (NM_015805, intron 27 of 28)	-26008.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	29.17	30.41	36.07	57.35	45.25	25.72	19.01	10.61	7.49
Merged-chr10-62339503-3	chr10	62338983	62339983	+	958.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	938.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	32.04	25.8	33.3	47.23	27.52	32.96	42.25	34.05	34.97
Merged-chr10-93357417-1	chr10	93356917	93357917	+	958.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21206.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	56.06	46.54	81.4	56.0	70.44	73.14	2.11	1.33	2.5
Merged-chr12-110843844-3	chr12	110843340	110844340	+	958.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152102)	TTS (NR_152102)	2811.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	72.08	86.63	61.97	83.66	71.84	67.52	87.66	96.39	58.71
Merged-chr17-34391658-3	chr17	34391156	34392156	+	958.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	16.59	12.9	6.47	8.1	0.0	5.63	14.79	13.27	8.74
Merged-chr17-10765034-3	chr17	10764537	10765537	+	958.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	Lx7|LINE|L1	75154.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	23.45	22.12	17.57	22.94	24.72	10.45	22.18	12.82	11.87
Merged-chr15-100669551-3	chr15	100669042	100670042	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001270537)	promoter-TSS (NM_001270537)	-42.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	35.47	41.47	55.5	49.25	26.59	44.21	48.58	52.18	31.23
Merged-chr7-116462599-3	chr7	116462092	116463092	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	-19134.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	56.63	61.75	39.77	67.47	56.91	65.91	42.25	23.88	28.1
Merged-chrX-57306887-3	chrX	57306394	57307394	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	19707.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	36.61	46.08	41.62	32.39	30.79	48.23	28.52	26.53	38.1
Merged-chr1-180405823-3	chr1	180405329	180406329	+	958.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-75280.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	99.54	64.51	68.45	62.07	54.11	98.87	51.75	42.89	46.84
Merged-chr18-38997266-3	chr18	38996735	38997735	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	4090.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	10.87	4.15	0.0	4.05	2.8	1.61	5.28	3.54	3.75
Merged-chr16-45651699-2	chr16	45651196	45652196	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2422.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	0.57	3.69	6.47	4.72	3.27	8.04	41.19	23.88	29.35
Merged-chr11-103005250-3	chr11	103004752	103005752	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-5331.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	76.66	97.23	86.95	88.39	75.11	100.47	63.37	68.09	50.59
Merged-chr10-125273847-1	chr10	125273347	125274347	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34969.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	10.3	20.74	9.25	16.87	12.13	11.25	20.07	15.48	9.99
Merged-chr12-52396551-2	chr12	52396033	52397033	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84076.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	7.44	6.45	7.4	14.17	9.33	6.43	7.39	5.75	5.62
Merged-chr19-31834430-3	chr19	31833945	31834945	+	958.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-34316.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	5.72	10.14	0.0	8.1	7.0	10.45	10.56	3.98	18.74
Merged-chr11-84180260-2	chr11	84179764	84180764	+	958.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12788.0	NM_001037932	628813.0	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690	predicted gene 11437	protein-coding	90.38	82.48	81.4	130.9	87.24	79.58	135.19	84.45	47.46
Merged-chr4-141142601-4	chr4	141142104	141143104	+	958.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2808.0	NR_102343	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	33.75	28.57	7.4	50.6	17.26	17.68	42.25	29.63	19.36
Merged-chr11-100760053-3	chr11	100759563	100760563	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081194)	promoter-TSS (NM_001081194)	-285.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	7.44	4.15	1.85	4.05	3.27	0.0	12.67	5.31	6.25
Merged-chr19-6292240-3	chr19	6291749	6292749	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	-14208.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	122.42	111.51	92.5	140.34	97.03	131.82	113.01	126.02	69.95
Merged-chr11-115634265-3	chr11	115633765	115634765	+	958.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5970.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	77.8	53.45	62.9	92.44	48.52	97.26	99.28	75.61	72.45
Merged-chr1-177711170-3	chr1	177710688	177711688	+	958.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-18626.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	13.73	9.22	4.62	16.19	3.73	17.68	21.12	12.38	17.49
Merged-chr8-71568439-3	chr8	71567931	71568931	+	958.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011977)	promoter-TSS (NM_011977)	-440.0	NM_011977	26457.0	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	56.06	31.79	70.3	60.72	45.72	69.93	22.18	22.99	26.23
Merged-chr11-54802423-3	chr11	54801909	54802909	+	958.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14706.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	92.1	71.42	37.92	101.21	66.71	49.03	92.94	83.57	47.46
Merged-chrX-71814551-3	chrX	71814057	71815057	+	958.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1523.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	11.44	18.43	5.55	14.17	11.2	4.02	28.52	22.99	19.36
Merged-chr6-52838912-3	chr6	52838408	52839408	+	958.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	70712.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	4.58	1.84	3.7	8.77	3.73	4.82	7.39	1.33	6.25
Merged-chr12-44181467-1	chr12	44180967	44181967	+	958.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28601.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.72	1.38	0.92	5.4	1.4	1.61	3.17	2.65	2.5
Merged-chr4-138326284-3	chr4	138325770	138326770	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026880)	promoter-TSS (NM_026880)	26.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	159.03	143.3	144.29	152.49	160.95	159.15	224.97	163.6	123.66
Merged-chr7-120203985-3	chr7	120203480	120204480	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026458)	promoter-TSS (NM_026458)	16.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	1.72	0.46	0.0	2.02	5.6	3.22	0.0	1.33	1.25
Merged-chr11-117200873-3	chr11	117200362	117201362	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	1201.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	100.68	64.51	62.9	148.44	82.57	130.21	173.21	157.41	54.33
Merged-chr10-82814781-3	chr10	82814250	82815250	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	2627.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	56.06	33.18	9.25	103.23	102.63	54.66	106.67	110.54	24.98
Merged-chr15-6402949-3	chr15	6402444	6403444	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	16196.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	56.63	33.18	7.4	54.65	18.19	31.35	38.02	39.8	28.1
Merged-chr8-84423143-1	chr8	84422643	84423643	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	7779.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	10.3	11.98	32.37	44.53	30.32	54.66	1.06	0.44	3.12
Merged-chr13-9393644-1	chr13	9393144	9394144	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	117119.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	21.74	23.5	7.4	26.31	13.06	16.08	23.24	13.27	11.87
Merged-chr16-91380495-1	chr16	91379995	91380995	+	958.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	7712.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	76.66	68.2	68.45	74.22	30.32	81.99	76.05	59.25	31.85
Merged-chr10-98619340-3	chr10	98618832	98619832	+	958.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267465.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	10.3	5.53	14.8	6.07	7.0	8.04	5.28	4.86	2.5
Merged-chr2-32912584-3	chr2	32912085	32913085	+	958.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146119, exon 5 of 14)	exon (NM_146119, exon 5 of 14)	36451.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.57	3.69	1.85	5.4	1.87	7.23	6.34	0.44	0.0
Merged-chr14-121427897-3	chr14	121427401	121428401	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-48671.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	8.58	7.83	5.55	3.37	5.6	6.43	11.62	13.71	10.62
Merged-chr1-120020586-3	chr1	120020093	120021093	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 1 of 13)	(GCTG)n|Simple_repeat|Simple_repeat	13613.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	47.48	72.8	61.97	64.77	55.51	44.21	54.92	52.18	36.85
Merged-chr18-37852296-3	chr18	37851785	37852785	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 25 of 26)	intron (NM_007858, intron 25 of 26)	2375.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	2.29	2.3	2.77	2.7	2.8	0.0	0.0	1.33	3.75
Merged-chr17-50576208-3	chr17	50575694	50576694	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	66647.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	73.79	81.1	62.9	56.0	56.91	49.83	28.52	25.2	16.24
Merged-chr11-68519970-3	chr11	68519497	68520497	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	L1MD2|LINE|L1	16978.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	92.1	71.42	87.87	58.03	28.92	78.77	72.88	76.49	53.71
Merged-chr1-107589957-3	chr1	107589442	107590442	+	958.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011459)	promoter-TSS (NM_011459)	-64.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	32.61	37.32	9.25	33.06	24.72	14.47	39.08	13.71	13.12
Merged-chr13-85507988-3	chr13	85507479	85508479	+	958.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218493.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	50.34	46.54	53.65	44.53	30.79	30.54	25.35	20.34	38.72
Merged-chr2-50907303-2	chr2	50906801	50907801	+	958.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2383.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	9.15	7.83	0.0	3.37	4.67	0.0	3.17	5.75	2.5
Merged-chr19-37474556-3	chr19	37474060	37475060	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	9306.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	11.44	15.67	39.77	22.27	9.8	21.7	31.69	19.01	21.23
Merged-chr10-96621022-3	chr10	96620501	96621501	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	4000.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	47.48	33.18	28.67	34.41	32.66	28.13	59.15	39.8	13.74
Merged-chr4-128689956-3	chr4	128689450	128690450	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	1212.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	14.3	13.36	14.8	17.54	12.13	13.66	13.73	14.15	9.37
Merged-chr16-44773850-3	chr16	44773362	44774362	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	8126.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	34.32	16.59	21.27	31.71	20.99	42.6	11.62	22.55	16.24
Merged-chr18-46313317-3	chr18	46312828	46313828	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	9.72	11.98	1.85	10.8	7.46	9.65	6.34	5.31	6.25
Merged-chr8-95140764-3	chr8	95140258	95141258	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1782.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	23.45	35.02	50.87	26.31	20.99	65.11	46.47	41.12	36.22
Merged-chr12-3237410-3	chr12	3236906	3237906	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015551, exon 2 of 7)	non-coding (NR_015551, exon 2 of 7)	1615.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	51.48	41.93	36.07	49.93	28.92	41.8	90.83	74.28	51.21
Merged-chr1-161252010-3	chr1	161251522	161252522	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007453)	promoter-TSS (NM_007453)	-812.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	13.16	12.9	0.92	16.19	10.26	4.82	22.18	11.94	8.74
Merged-chr4-108461755-3	chr4	108461261	108462261	+	958.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 2 of 30)	intron (NM_175472, intron 2 of 30)	2335.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	72.65	123.49	68.45	66.8	73.71	57.07	106.67	160.95	58.71
Merged-chr19-53311271-3	chr19	53310670	53311670	+	958.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360348)	promoter-TSS (NM_001360348)	-275.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	132.14	89.85	103.59	132.24	61.58	127.0	120.41	95.95	92.43
Merged-chr13-81793983-3	chr13	81793476	81794476	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007684, intron 4 of 4)	B4A|SINE|B4	10729.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	19.45	11.06	15.72	14.17	11.2	22.51	12.67	7.96	5.62
Merged-chr2-163587656-3	chr2	163587152	163588152	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14662.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	8.58	7.37	1.85	18.89	4.2	8.84	3.17	1.77	0.0
Merged-chr11-65515865-1	chr11	65515365	65516365	+	958.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	218967.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	1.72	4.15	3.7	13.49	7.93	8.84	7.39	6.63	4.37
Merged-chr5-90339788-3	chr5	90339290	90340290	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	26395.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	66.36	64.51	24.97	66.12	56.91	62.7	51.75	60.58	31.85
Merged-chr10-8029048-3	chr10	8028552	8029552	+	958.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-72929.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	22.88	18.43	20.35	16.87	8.4	5.63	14.79	10.17	10.62
Merged-chr11-85310792-2	chr11	85310297	85311297	+	958.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016910)	promoter-TSS (NM_016910)	-457.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	70.36	94.0	79.55	67.47	102.63	118.16	102.45	114.08	64.95
Merged-chr16-49700098-3	chr16	49699594	49700594	+	958.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028680, intron 1 of 10)	intron (NM_028680, intron 1 of 10)	800.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	24.03	38.71	20.35	37.78	27.06	40.19	20.07	29.18	20.61
Merged-chr2-131427159-3	chr2	131426663	131427663	+	958.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-64699.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	55.49	40.09	21.27	46.56	28.92	30.54	44.36	46.43	11.24
Merged-chr1-186703696-3	chr1	186703210	186704210	+	958.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	2279.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	2.29	1.84	0.0	1.35	3.27	0.8	2.11	4.42	1.87
Merged-chr1-43535858-3	chr1	43535378	43536378	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 3 of 4)	L3|LINE|CR1	90127.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	23.45	15.67	11.1	14.84	8.4	11.25	21.12	13.27	11.87
Merged-chrX-95444320-3	chrX	95443817	95444817	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175179, intron 1 of 1)	CpG	523.0	NM_175179	72345.0	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	19.45	27.19	50.87	20.24	22.39	40.19	32.74	38.91	19.36
Merged-chr19-46356914-3	chr19	46356400	46357400	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029186)	promoter-TSS (NM_029186)	20.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	15.45	5.07	3.7	8.77	7.0	14.47	20.07	13.27	8.74
Merged-chr8-117308442-3	chr8	117307939	117308939	+	958.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-40731.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	55.49	51.61	36.07	62.07	43.85	65.11	71.82	61.02	41.22
Merged-chr3-30592540-3	chr3	30592065	30593065	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7305.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	10.3	10.6	20.35	14.17	10.73	7.23	21.12	16.8	14.99
Merged-chr12-3874360-3	chr12	3873867	3874867	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 6 of 22)	intron (NM_007872, intron 6 of 22)	-12123.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	87.52	88.01	101.74	85.01	77.44	88.42	97.17	112.75	64.95
Merged-chr4-130816085-3	chr4	130815563	130816563	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	23526.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	34.9	30.87	36.07	37.11	34.99	51.44	60.2	39.35	31.23
Merged-chr9-3025531-3	chr9	3025031	3026031	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	13212.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	179.62	623.44	96.2	213.89	649.85	82.79	390.79	268.84	81.81
Merged-chr2-156524270-3	chr2	156523784	156524784	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291122, intron 14 of 20)	intron (NM_001291122, intron 14 of 20)	-23292.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	11.44	5.99	7.4	5.4	1.87	6.43	2.11	6.19	5.0
Merged-chr19-55792103-3	chr19	55791614	55792614	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50304.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	33.18	35.94	23.12	37.11	20.53	26.53	24.29	44.66	23.11
Merged-chr10-9876040-3	chr10	9875561	9876561	+	958.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	MTC|LTR|ERVL-MaLR	24979.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	6.29	7.83	3.7	8.77	6.06	25.72	11.62	9.29	11.24
Merged-chr16-92825402-3	chr16	92824912	92825912	+	958.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	662.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	276.3	347.43	203.49	333.31	386.74	212.2	342.2	395.74	178.61
Merged-chr3-52612327-3	chr3	52611817	52612817	+	958.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	95353.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	5.15	3.69	3.7	4.05	7.93	12.86	1.06	3.1	2.5
Merged-chr5-115260509-3	chr5	115260012	115261012	+	958.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	12383.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	42.9	43.31	16.65	34.41	30.32	66.71	45.42	47.31	33.1
Merged-chr11-117879025-3	chr11	117878537	117879537	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5511.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	124.14	86.63	103.59	148.44	107.76	116.55	134.14	106.56	36.22
Merged-chr4-101675854-3	chr4	101675354	101676354	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28071.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	14.3	11.98	3.7	26.31	16.79	28.13	24.29	18.57	29.98
Merged-chr10-79533802-3	chr10	79533334	79534334	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302442)	promoter-TSS (NM_001302442)	-47.0	NM_001302389	50784.0	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	14.3	10.14	16.65	18.22	10.26	12.06	8.45	8.4	11.87
Merged-chr8-41100488-1	chr8	41099988	41100988	+	958.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 1 of 13)	MTC|LTR|ERVL-MaLR	14179.0	NM_001286413	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	2.86	2.76	5.55	1.35	4.67	3.22	11.62	3.54	6.25
Merged-chr6-83647236-1	chr6	83646736	83647736	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	8880.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	39.47	53.45	48.1	46.56	62.98	76.36	53.87	47.31	37.47
Merged-chr13-9231630-3	chr13	9231133	9232133	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44892.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	8.58	16.13	20.35	13.49	8.86	27.33	15.84	10.17	9.99
Merged-chr2-164493692-3	chr2	164493150	164494150	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026797)	TTS (NM_026797)	-3875.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	156.74	130.86	81.4	149.11	96.57	94.85	92.94	105.68	53.71
Merged-chr11-117864920-3	chr11	117864427	117865427	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001085535, exon 4 of 4)	3' UTR (NM_001085535, exon 4 of 4)	4175.0	NM_001085535	546519.0	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581	transmembrane protein 235	protein-coding	6.86	7.83	18.5	12.82	4.67	10.45	5.28	5.31	7.49
Merged-chr17-71020733-1	chr17	71020233	71021233	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083934, intron 1 of 36)	intron (NM_001083934, intron 1 of 36)	1176.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.72	12.9	0.0	17.54	12.6	3.22	9.51	13.27	8.74
Merged-chr12-83632784-1	chr12	83632284	83633284	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027349, intron 1 of 18)	CpG	550.0	NM_027349	67039.0	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	261.43	337.75	280.26	200.39	342.42	223.45	283.06	269.28	207.97
Merged-chr5-90020298-3	chr5	90019784	90020784	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136950.0	NM_001081401	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	15.45	28.11	20.35	11.47	14.0	8.04	15.84	16.36	18.74
Merged-chr5-43745316-1	chr5	43744816	43745816	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159963, exon 11 of 11)	exon (NM_001159963, exon 11 of 11)	36833.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	5.15	5.53	7.4	7.42	6.53	8.04	5.28	5.75	3.75
Merged-chr11-17212272-1	chr11	17211772	17212772	+	958.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025443)	promoter-TSS (NM_025443)	379.0	NM_178909	103784.0	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	53.2	74.19	70.3	64.1	64.84	74.75	54.92	59.25	49.96
Merged-chr13-58067387-1	chr13	58066887	58067887	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35041.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	192.21	235.92	125.79	200.39	252.85	207.38	216.52	227.27	138.02
Merged-chr8-84501754-3	chr8	84501256	84502256	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	intron (NM_001252060, intron 3 of 47)	86392.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	90.96	79.25	81.4	37.11	31.72	30.54	14.79	16.36	9.99
Merged-chr4-108083582-3	chr4	108083064	108084064	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 10 of 15)	RSINE1|SINE|B4	-3793.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	76.66	67.74	39.77	87.04	68.11	54.66	157.37	175.1	23.73
Merged-chr13-52041539-3	chr13	52041044	52042044	+	958.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55197.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	101.25	118.42	88.8	93.79	128.29	121.37	125.69	199.42	69.95
Merged-chr10-5193675-1	chr10	5193175	5194175	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079686, intron 1 of 54)	URR1A|DNA|hAT-Charlie	1032.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	17.16	17.51	15.72	15.52	19.59	3.22	21.12	22.11	5.0
Merged-chr2-35505704-1	chr2	35505204	35506204	+	958.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44255.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	7.44	9.68	7.4	18.89	11.2	9.65	6.34	3.1	6.25
Merged-chr17-67193917-3	chr17	67193433	67194433	+	957.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160526.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	21.17	23.5	11.1	27.66	15.39	10.45	11.62	7.07	6.25
Merged-chr6-148645064-3	chr6	148644568	148645568	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-30759.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	3.43	5.07	5.55	1.35	5.13	0.0	2.11	1.77	2.5
Merged-chr2-118541048-3	chr2	118540543	118541543	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	3544.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	96.68	77.87	56.42	140.34	90.5	73.95	250.32	247.17	105.55
Merged-chr1-54920299-3	chr1	54919806	54920806	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	6081.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	10.3	12.9	7.4	23.62	10.73	8.04	10.56	11.05	16.86
Merged-chr1-171843102-3	chr1	171842554	171843554	+	957.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	3357.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	135.0	115.66	52.72	118.08	97.97	81.18	154.2	184.38	81.19
Merged-chr9-46013284-3	chr9	46012786	46013786	+	957.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357241)	promoter-TSS (NM_001357241)	466.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	215.09	161.27	93.42	185.55	136.22	105.3	149.98	72.96	83.06
Merged-chr17-83732988-3	chr17	83732518	83733518	+	957.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	B3A|SINE|B2	26855.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	78.94	87.55	80.47	86.36	81.64	80.38	72.88	95.07	64.95
Merged-chr8-72836069-2	chr8	72835574	72836574	+	957.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 13 of 15)	intron (NM_001317391, intron 13 of 15)	74415.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	4.0	4.61	7.4	6.07	5.13	0.0	8.45	2.65	6.25
Merged-chr14-14068826-3	chr14	14068312	14069312	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52092.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	20.02	31.79	23.12	37.78	23.79	28.13	31.69	25.65	30.6
Merged-chr1-182707692-3	chr1	182707186	182708186	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	41494.0	NM_001033547	433386.0	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	12.01	11.52	9.25	7.42	9.33	6.43	20.07	18.13	7.49
Merged-chr11-106704153-3	chr11	106703647	106704647	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	11134.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	52.63	36.4	37.92	39.81	23.79	34.56	59.15	29.63	18.74
Merged-chr19-17359693-3	chr19	17359189	17360189	+	957.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-3022.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	76.66	103.22	56.42	63.42	59.25	69.93	19.01	12.82	23.73
Merged-chr2-150750830-3	chr2	150750316	150751316	+	957.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1735.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	44.05	47.0	48.1	39.13	39.19	45.01	51.75	59.69	28.1
Merged-chr13-58503795-3	chr13	58503293	58504293	+	957.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100450.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	12.59	9.68	14.8	23.62	7.46	18.49	4.22	5.31	2.5
Merged-chr8-72485858-2	chr8	72485352	72486352	+	957.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	6762.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	28.03	32.25	25.9	7.42	8.4	12.86	19.01	25.65	36.85
Merged-chr14-18331175-3	chr14	18330699	18331699	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009455, intron 1 of 5)	CpG	645.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	64.07	43.31	57.35	76.92	33.12	53.85	77.1	26.53	43.72
Merged-chr16-29947926-3	chr16	29947430	29948430	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31194.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	8.01	4.15	16.65	10.8	4.67	13.66	11.62	13.71	13.74
Merged-chr3-90125947-3	chr3	90125443	90126443	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029937, intron 7 of 39)	intron (NM_029937, intron 7 of 39)	21811.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	36.04	53.45	50.87	35.76	41.52	40.99	48.58	55.27	42.47
Merged-chr13-69533453-3	chr13	69532931	69533931	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	CpG	433.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	56.06	55.29	48.1	58.7	53.18	73.95	51.75	30.07	32.48
Merged-chr12-101892303-3	chr12	101891803	101892803	+	957.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028446, intron 7 of 20)	intron (NM_028446, intron 7 of 20)	-20364.0	NR_152255	100504056.0	Mm.416837	NR_152255		Gm20036	-	predicted gene, 20036	ncRNA	32.61	39.63	37.0	35.76	29.39	41.8	41.19	39.8	29.98
Merged-chr19-46339844-3	chr19	46339312	46340312	+	957.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1152.0	NM_001164292	67116.0	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	172.76	148.83	119.32	154.51	112.43	137.45	175.33	190.13	102.42
Merged-chr4-144980940-3	chr4	144980440	144981440	+	957.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87803.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	25.74	22.12	12.95	26.99	23.79	19.29	23.24	11.05	0.62
Merged-chr3-135826115-3	chr3	135825634	135826634	+	957.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135150, intron 1 of 8)	intron (NM_001135150, intron 1 of 8)	344.0	NM_001135150	67547.0	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	39.47	40.55	30.52	47.9	53.65	94.04	52.81	40.68	47.46
Merged-chr14-75025565-3	chr14	75025038	75026038	+	957.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	9511.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	55.49	47.46	34.22	49.25	47.58	53.85	50.7	42.45	25.61
Merged-chr11-60837968-3	chr11	60837449	60838449	+	957.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 1 of 6)	intron (NM_001172112, intron 1 of 6)	7318.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	20.02	12.9	5.55	51.28	38.25	50.64	67.6	73.84	28.73
Merged-chr1-120256059-3	chr1	120255559	120256559	+	957.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	9221.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	2.86	6.91	10.17	8.77	7.46	11.25	10.56	9.29	3.75
Merged-chr14-79558030-3	chr14	79557531	79558531	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	intron (NM_007920, intron 2 of 8)	-29629.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	88.1	117.96	53.65	78.94	73.24	76.36	105.62	131.77	77.44
Merged-chr16-65470785-3	chr16	65470303	65471303	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-49826.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	16.59	12.44	7.4	14.17	7.93	6.43	22.18	8.4	13.74
Merged-chr15-83134908-3	chr15	83134407	83135407	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-12106.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	70.93	70.04	54.57	69.5	37.79	62.7	74.99	76.05	61.83
Merged-chr2-71041514-3	chr2	71041016	71042016	+	957.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	L1MC3|LINE|L1	14090.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	69.22	51.15	29.6	172.05	89.57	51.44	109.84	142.38	33.72
Merged-chr8-33492499-2	chr8	33491997	33492997	+	957.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8186.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	1.72	3.69	0.92	6.75	5.13	3.22	33.8	42.45	21.86
Merged-chr8-47674460-3	chr8	47673932	47674932	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	CpG	727.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	286.03	317.94	265.46	248.3	198.73	223.45	230.25	264.86	171.75
Merged-chrUn_JH584304-3592-1	chrUn_JH584304	3092	4092	+	957.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	56097.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	40.14	13.71	0.0
Merged-chr18-36230820-3	chr18	36230319	36231319	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33659.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	18.88	16.13	16.65	22.94	19.13	4.82	17.96	25.2	19.36
Merged-chr1-166429209-3	chr1	166428698	166429698	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19370.0	NM_175170	71592.0	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	14.87	8.29	3.7	15.52	10.73	6.43	49.64	33.16	20.61
Merged-chr8-15519932-3	chr8	15519429	15520429	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	462276.0	NM_008664	17930.0	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	4.0	5.53	9.25	6.75	5.13	1.61	3.17	3.54	8.74
Merged-chr8-61908635-3	chr8	61908124	61909124	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5930.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	30.89	36.4	33.3	49.25	32.19	53.85	66.54	45.54	33.1
Merged-chr1-42397338-1	chr1	42396838	42397838	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	297487.0	NR_027826	66297.0	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	29.75	36.86	19.42	0.67	2.8	1.61	1.06	0.44	3.75
Merged-chr3-84345166-3	chr3	84344662	84345662	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34759.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	7.44	5.07	3.7	24.96	20.99	29.74	12.67	19.01	6.25
Merged-chr2-52378587-3	chr2	52378081	52379081	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-39783.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	25.17	28.57	9.25	30.36	32.19	17.68	60.2	64.56	22.48
Merged-chr4-41358857-3	chr4	41358362	41359362	+	957.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	intron (NM_001355508, intron 1 of 6)	6899.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	97.82	110.59	67.52	88.39	102.17	73.14	77.1	108.33	71.2
Merged-chr2-58497174-2	chr2	58496665	58497665	+	957.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64245.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	49.77	47.0	62.9	17.54	17.73	23.31	29.57	31.84	19.36
Merged-chr4-145585175-2	chr4	145584677	145585677	+	957.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324416)	promoter-TSS (NM_001324416)	-23.0	NM_001324416	433801.0	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	-	predicted gene 13212	protein-coding	14.87	13.82	12.95	2.02	4.67	5.63	45.42	26.53	21.23
Merged-chr16-94239354-2	chr16	94238866	94239866	+	957.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	50925.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	54.35	43.31	37.92	65.45	41.05	44.21	63.37	83.13	33.1
Merged-chr10-99467560-5	chr10	99467066	99468066	+	957.628601	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141605.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	152.17	143.76	103.59	151.81	118.49	131.82	119.35	155.2	94.3
Merged-chr6-127330417-3	chr6	127329922	127330922	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22455.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	6.29	5.53	9.25	4.72	3.27	6.43	6.34	3.1	3.12
Merged-chr12-40469143-3	chr12	40468628	40469628	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	23075.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	28.03	40.09	20.35	16.87	15.86	8.84	22.18	19.9	18.11
Merged-chr4-122887132-3	chr4	122886645	122887645	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-1069.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	75.51	122.11	102.67	58.03	79.31	121.37	91.89	119.39	103.67
Merged-chr3-108881130-3	chr3	108880632	108881632	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	8876.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	110.98	90.31	50.87	110.65	74.17	75.56	64.43	74.28	61.83
Merged-chr6-54958137-3	chr6	54957622	54958622	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	13539.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	36.04	36.86	30.52	41.16	31.26	39.39	47.53	62.35	49.34
Merged-chr15-103342627-3	chr15	103342122	103343122	+	957.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2536.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	2.86	7.83	1.85	4.05	4.2	12.06	4.22	0.44	3.75
Merged-chr14-65381734-3	chr14	65381241	65382241	+	957.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	23065.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	21.17	32.72	26.82	31.71	38.72	38.58	21.12	23.43	18.11
Merged-chr2-58534576-3	chr2	58534089	58535089	+	957.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	26821.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	9.72	9.22	9.25	10.8	7.93	16.08	5.28	10.61	7.49
Merged-chr6-30354950-3	chr6	30354463	30355463	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36057.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	8.01	15.21	7.4	9.45	6.53	12.06	9.51	2.65	6.25
Merged-chr7-34672154-3	chr7	34671659	34672659	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16650.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.57	3.69	3.7	2.02	3.27	1.61	2.11	0.0	9.37
Merged-chr7-25726172-3	chr7	25725683	25726683	+	957.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360789, exon 12 of 15)	exon (NM_001360789, exon 12 of 15)	-7130.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	11.44	8.29	10.17	16.87	8.86	12.06	14.79	9.29	16.24
Merged-chr2-58496800-3	chr2	58496308	58497308	+	957.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	64602.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	70.93	62.67	57.35	24.29	24.26	26.53	34.85	40.24	21.86
Merged-chr11-80383858-3	chr11	80383320	80384320	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045038, intron 1 of 16)	intron (NR_045038, intron 1 of 16)	541.0	NM_001130171	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	227.68	292.14	215.51	193.64	236.52	185.68	183.78	324.55	164.88
Merged-chr9-22366751-1	chr9	22366251	22367251	+	957.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	intron (NM_028390, intron 8 of 23)	22455.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	8.01	14.75	4.62	8.77	2.8	12.86	2.11	7.96	6.25
Merged-chr6-90494328-2	chr6	90493829	90494829	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31753.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	22.31	11.52	44.4	16.19	12.6	6.43	12.67	4.42	4.37
Merged-chrX-169795107-1	chrX	169794607	169795607	+	957.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	-15472.0	NR_003635	66747.0	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo	8.58	1.38	1.85	4.05	1.4	0.8	9.51	9.29	0.0
Merged-chr19-3719648-3	chr19	3719164	3720164	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11253.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	27.46	20.27	12.95	28.34	15.39	13.66	26.4	16.8	7.49
Merged-chr12-17467002-2	chr12	17466510	17467510	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77863.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.01	10.14	16.65	4.72	4.67	8.04	2.11	4.42	7.49
Merged-chr19-40638748-3	chr19	40638242	40639242	+	957.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	-21028.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	166.47	175.1	137.82	148.44	138.09	168.8	167.93	168.91	96.8
Merged-chr18-64527465-3	chr18	64526959	64527959	+	957.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10902.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	5.15	3.23	0.0	6.07	1.4	0.0	6.34	0.88	1.25
Merged-chr3-87151664-3	chr3	87151146	87152146	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170985, intron 1 of 15)	intron (NM_001170985, intron 1 of 15)	23101.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	8.58	2.76	2.77	2.7	2.33	4.02	7.39	2.65	0.0
Merged-chr9-111290041-3	chr9	111289549	111290549	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18204.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	76.08	56.22	25.9	64.1	46.18	55.46	85.55	69.86	58.08
Merged-chr9-44480297-3	chr9	44479779	44480779	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2546.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	13.16	11.06	3.7	10.8	13.53	10.45	8.45	10.17	9.37
Merged-chr16-12091039-3	chr16	12090535	12091535	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	Tigger9b|DNA|TcMar-Tigger	106922.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	26.31	27.19	39.77	17.54	17.26	15.27	23.24	25.2	16.86
Merged-chr17-64471748-3	chr17	64471249	64472249	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	30943.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	6.86	1.84	6.47	5.4	0.47	4.82	7.39	4.42	0.0
Merged-chr3-36330836-3	chr3	36330326	36331326	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-108551.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	1.14	1.38	0.0	3.37	2.8	0.0	1.06	1.77	2.5
Merged-chr10-99190941-3	chr10	99190431	99191431	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	B3|SINE|B2	-72300.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	9.72	9.22	6.47	11.47	4.67	1.61	16.9	10.17	10.62
Merged-chr11-100369974-3	chr11	100369473	100370473	+	957.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13832.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	63.5	58.52	72.15	64.1	45.25	58.68	54.92	69.42	48.09
Merged-chr3-146655375-3	chr3	146654825	146655825	+	957.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4008.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	18.88	33.18	16.65	56.0	50.38	45.01	58.09	41.12	43.09
Merged-chr8-27058470-3	chr8	27057983	27058983	+	957.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15928.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	2.29	2.76	3.7	6.75	5.13	1.61	7.39	2.65	6.25
Merged-chr13-115148738-2	chr13	115148235	115149235	+	957.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46771.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	5.15	4.61	3.7	9.45	14.0	12.86	6.34	8.84	11.24
Merged-chr8-92881445-2	chr8	92880924	92881924	+	957.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 7 of 12)	intron (NM_001357375, intron 7 of 12)	-19971.0	NM_027112	69543.0	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	1.14	1.84	1.85	4.05	2.8	7.23	13.73	11.5	9.99
Merged-chr4-3721673-2	chr4	3721169	3722169	+	957.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	L1MC1|LINE|L1	6705.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	93.82	114.74	63.82	93.11	75.57	67.52	120.41	130.88	73.69
Merged-chr9-55253857-6	chr9	55253369	55254369	+	957.4027710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	29756.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	51.48	61.28	26.82	91.76	93.3	73.14	66.54	61.9	37.47
Merged-chr13-51710917-3	chr13	51710423	51711423	+	957.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013660, intron 11 of 15)	intron (NM_013660, intron 11 of 15)	59215.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.57	1.84	0.92	4.72	1.4	4.82	2.11	1.33	3.75
Merged-chr9-61024915-3	chr9	61024410	61025410	+	957.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7841.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	25.17	16.59	16.65	15.52	11.66	14.47	14.79	19.46	3.75
Merged-chr16-89871679-3	chr16	89871162	89872162	+	957.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-53310.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	132.72	111.51	77.7	132.24	121.76	127.8	167.93	126.46	74.94
Merged-chr12-3871875-3	chr12	3871369	3872369	+	957.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-9625.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	184.77	138.7	135.97	157.88	131.56	150.31	144.7	125.13	102.42
Merged-chr12-100883380-3	chr12	100882874	100883874	+	957.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	16150.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	21.74	13.82	9.25	29.01	6.53	11.25	13.73	11.5	7.49
Merged-chr8-120576021-3	chr8	120575554	120576554	+	957.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 13 of 15)	intron (NM_001145896, intron 13 of 15)	13021.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	10.3	9.22	25.9	21.59	12.6	19.29	9.51	16.36	9.37
Merged-chr3-95988212-2	chr3	95987712	95988712	+	957.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023320)	TTS (NM_023320)	2702.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	126.42	121.65	86.95	115.38	107.3	106.1	135.19	176.87	120.53
Merged-chr5-129864599-2	chr5	129864107	129865107	+	957.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026445)	TTS (NM_026445)	14481.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	13.73	16.59	10.17	12.14	11.66	14.47	4.22	1.77	5.0
Merged-chrX-167334789-2	chrX	167334291	167335291	+	957.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4220.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	17.16	25.8	24.05	27.66	20.06	20.9	14.79	22.99	17.49
Merged-chr5-123145450-1	chr5	123144950	123145950	+	957.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040398, intron 4 of 16)	intron (NM_001040398, intron 4 of 16)	3257.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	6.86	17.05	22.2	14.17	12.13	15.27	15.84	11.5	14.99
Merged-chr2-128782395-3	chr2	128781873	128782873	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-35930.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	32.61	26.26	25.9	26.99	20.06	53.05	24.29	27.41	14.99
Merged-chr4-59096594-3	chr4	59096096	59097096	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61440.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	6.29	5.07	1.85	5.4	3.73	0.0	2.11	1.33	4.37
Merged-chrY-90744586-1	chrY	90744086	90745086	+	957.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	10464.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.57	0.92	3.7	8.77	4.67	8.04	3.17	15.48	36.85
Merged-chr10-121510058-3	chr10	121509607	121510607	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33857.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	26.31	11.06	11.1	21.59	16.79	33.76	11.62	9.29	7.49
Merged-chr17-56958046-3	chr17	56957560	56958560	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175731, intron 4 of 5)	intron (NM_175731, intron 4 of 5)	-22672.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	2.86	5.07	5.55	7.42	3.27	8.04	2.11	0.88	18.11
Merged-chr5-44227098-3	chr5	44226584	44227584	+	957.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173764)	promoter-TSS (NM_173764)	-478.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	169.9	93.54	84.17	141.69	88.17	106.1	154.2	71.19	48.71
Merged-chr10-80932871-3	chr10	80932392	80933392	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008655)	TTS (NM_008655)	2801.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	40.62	17.97	16.65	43.86	25.19	38.58	77.1	56.16	43.09
Merged-chr11-119058173-3	chr11	119057668	119058668	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17255.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	10.87	10.14	0.0	22.94	7.93	12.86	11.62	6.63	2.5
Merged-chr16-20361901-3	chr16	20361400	20362400	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 24 of 29)	RLTR9E|LTR|ERVK	-36496.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	53.2	49.3	52.72	44.53	39.65	58.68	55.98	65.0	28.73
Merged-chr15-78803002-3	chr15	78802500	78803500	+	957.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130859)	promoter-TSS (NM_130859)	42.0	NM_130859	105844.0	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	6.29	5.07	0.0	11.47	5.13	6.43	13.73	7.07	6.87
Merged-chr13-24800062-3	chr13	24799577	24800577	+	957.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1580.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	227.68	262.65	178.52	211.86	212.73	213.81	232.36	328.09	202.35
Merged-chr6-22358156-3	chr6	22357667	22358667	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2086.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	98.97	105.52	53.65	89.06	75.57	53.85	110.9	131.32	56.21
Merged-chr3-135424049-3	chr3	135423535	135424535	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025902)	promoter-TSS (NM_025902)	-602.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	287.74	326.7	199.79	281.36	269.64	223.45	272.5	364.79	187.98
Merged-chr1-151689234-3	chr1	151688734	151689734	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	65493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	106.97	96.3	63.82	87.71	55.51	50.64	86.61	69.86	53.71
Merged-chr14-8215371-3	chr14	8214884	8215884	+	957.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305937)	promoter-TSS (NM_001305937)	-864.0	NM_001305937	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	212.8	216.11	79.55	331.96	334.95	139.06	324.25	412.54	99.92
Merged-chr17-46856841-3	chr17	46856353	46857353	+	957.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25440.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	485.1	600.4	374.61	529.65	582.67	356.08	445.71	434.65	259.18
Merged-chr17-36992498-3	chr17	36992000	36993000	+	957.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34-int|LTR|ERV1	-2996.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	33.75	40.55	37.0	14.84	10.26	14.47	19.01	12.38	14.99
Merged-chr2-152696951-3	chr2	152696453	152697453	+	957.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 10 of 11)	intron (NM_010376, intron 10 of 11)	9805.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	16.59	14.28	18.5	12.14	8.86	8.84	14.79	15.48	13.74
Merged-chr18-62172913-3	chr18	62172430	62173430	+	957.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7051.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	54.35	36.4	52.72	29.69	25.66	36.97	28.52	38.47	21.23
Merged-chr18-4325342-3	chr18	4324843	4325843	+	957.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	27610.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	43.48	62.67	40.7	55.33	32.66	49.03	102.45	116.73	66.82
Merged-chr2-11637288-3	chr2	11636794	11637794	+	957.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5498.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	16.59	5.07	1.85	5.4	11.2	12.86	7.39	10.17	11.87
Merged-chr2-22811630-3	chr2	22811126	22812126	+	957.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	37299.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	19.45	33.64	10.17	52.63	45.72	46.62	39.08	33.16	35.6
Merged-chr5-125352091-3	chr5	125351602	125352602	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-11008.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	24.03	29.03	17.57	10.12	16.33	36.97	15.84	17.24	19.36
Merged-chr6-31412697-3	chr6	31412213	31413213	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 1 of 17)	B3|SINE|B2	13885.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	22.31	20.74	28.67	43.86	16.79	17.68	30.63	14.59	19.98
Merged-chr19-56455890-3	chr19	56455365	56456365	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5772.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	9.15	11.06	18.5	7.42	5.6	6.43	13.73	13.71	5.0
Merged-chr5-123891191-3	chr5	123890652	123891652	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11132.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	78.37	35.02	23.12	54.65	20.99	14.47	31.69	21.22	7.49
Merged-chr16-11017987-3	chr16	11017468	11018468	+	957.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9070.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	10.87	11.98	3.7	10.12	6.06	9.65	20.07	3.1	7.49
Merged-chr11-97592060-1	chr11	97591560	97592560	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6451.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	12.01	3.23	3.7	10.12	6.06	6.43	6.34	4.86	5.0
Merged-chr1-152787049-4	chr1	152786513	152787513	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-13140.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	12.59	15.67	18.5	22.27	11.66	8.84	27.46	38.03	24.36
Merged-chr13-5592632-3	chr13	5592126	5593126	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265466.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	34.9	65.43	29.6	70.17	70.44	46.62	42.25	50.41	24.36
Merged-chr13-83072136-2	chr13	83071592	83072592	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-373759.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	17.73	22.12	24.05	26.31	15.39	10.45	22.18	26.53	16.24
Merged-chr3-27984589-3	chr3	27984102	27985102	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	431.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	105.26	104.14	60.12	95.14	81.64	75.56	109.84	107.89	61.83
Merged-chr4-35223214-2	chr4	35222724	35223724	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	2656.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	152.17	151.6	104.52	134.27	116.63	95.65	207.01	219.76	106.17
Merged-chr4-58288968-3	chr4	58288444	58289444	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037128, intron 1 of 14)	intron (NM_001037128, intron 1 of 14)	2982.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	10.3	6.91	1.85	6.75	7.46	8.04	3.17	2.65	1.25
Merged-chr18-39666354-1	chr18	39665854	39666854	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107143.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.15	4.15	1.85	6.07	4.67	11.25	6.34	1.33	7.49
Merged-chr7-72166407-1	chr7	72165907	72166907	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 14 of 22)	intron (NM_001024703, intron 14 of 22)	140188.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	5.15	7.83	8.32	7.42	5.13	5.63	5.28	0.44	2.5
Merged-chr10-30749739-3	chr10	30749229	30750229	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	53597.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	14.87	5.99	3.7	7.42	5.6	4.02	5.28	2.21	2.5
Merged-chr8-108764979-3	chr8	108764441	108765441	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	50297.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	53.77	59.9	58.27	48.58	56.45	69.13	34.85	36.7	38.1
Merged-chr15-41639884-2	chr15	41639376	41640376	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149119.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	8.58	3.23	1.85	4.72	10.73	14.47	5.28	9.29	6.25
Merged-chr7-24380054-1	chr7	24379554	24380554	+	957.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163510, intron 4 of 8)	MIR|SINE|MIR	9791.0	NM_008433	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	14.87	9.68	23.12	5.4	6.06	20.09	29.57	22.99	24.36
Merged-chr10-111439702-1	chr10	111439202	111440202	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-33525.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.29	0.92	0.0	4.05	5.13	2.41	4.22	3.1	5.62
Merged-chr19-22916897-3	chr19	22916407	22917407	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	166302.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	3.43	2.76	0.0	12.82	8.86	14.47	30.63	15.48	20.61
Merged-chrX-102079206-1	chrX	102078706	102079706	+	957.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163610, exon 6 of 8)	exon (NM_001163610, exon 6 of 8)	-7899.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	10.87	11.98	9.25	11.47	6.06	8.04	9.51	5.31	9.99
Merged-chr18-4349859-3	chr18	4349430	4350430	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	3023.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	154.45	176.02	111.92	138.32	197.8	135.04	218.63	192.34	81.19
Merged-chr11-68407457-3	chr11	68406970	68407970	+	957.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20644.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	20.02	20.74	15.72	34.41	40.12	22.51	38.02	18.57	6.25
Merged-chr6-99205377-3	chr6	99204870	99205870	+	956.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	61145.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	104.69	99.53	41.62	115.38	71.38	83.59	145.75	130.0	71.82
Merged-chr9-35541674-3	chr9	35541156	35542156	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013932)	TTS (NM_013932)	16814.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	2.86	4.15	3.7	7.42	2.8	2.41	3.17	1.33	3.75
Merged-chr8-71908703-3	chr8	71908229	71909229	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166645, exon 1 of 3)	5' UTR (NM_001166645, exon 1 of 3)	123.0	NM_001166645	382019.0	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	Gm15468	zinc finger protein 882	protein-coding	67.5	70.04	79.55	82.99	87.24	104.49	117.24	103.02	72.45
Merged-chr11-44540444-3	chr11	44539920	44540920	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	MTD|LTR|ERVL-MaLR	21043.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	46.34	61.28	65.67	37.78	36.39	46.62	62.31	75.61	34.97
Merged-chr11-86618753-3	chr11	86618252	86619252	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-34594.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	34.9	33.18	24.05	43.86	33.59	59.48	49.64	51.29	49.34
Merged-chr6-122596766-3	chr6	122596287	122597287	+	956.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	intron (NM_001134391, intron 2 of 7)	5657.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	83.52	67.27	53.65	94.46	52.72	67.52	125.69	127.34	99.3
Merged-chr7-125581496-3	chr7	125580980	125581980	+	956.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21949.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	17.73	9.68	18.5	41.16	25.66	31.35	20.07	6.19	5.0
Merged-chr8-70354205-3	chr8	70353710	70354710	+	956.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122829)	promoter-TSS (NM_001122829)	-931.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	72.65	65.89	77.7	49.25	49.45	59.48	96.11	87.99	84.94
Merged-chr13-47265371-3	chr13	47264878	47265878	+	956.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71375.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	36.61	37.78	29.6	49.25	46.65	73.14	40.14	35.37	10.62
Merged-chr12-102439226-2	chr12	102438719	102439719	+	956.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	594.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	343.8	363.1	267.31	330.61	316.29	278.91	364.38	439.96	184.24
Merged-chr9-24505263-3	chr9	24504782	24505782	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2142.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	33.18	35.94	38.85	22.27	19.59	40.99	58.09	43.77	26.23
Merged-chrX-71984584-3	chrX	71984077	71985077	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 2 of 4)	CT-rich|Low_complexity|Low_complexity	-7272.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	4.0	3.69	5.55	2.7	0.93	3.22	5.28	6.19	1.25
Merged-chr2-11713646-3	chr2	11713144	11714144	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	RLTR17|LTR|ERVK	7932.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	16.02	15.21	12.02	15.52	5.13	14.47	10.56	8.84	11.87
Merged-chr7-79721514-3	chr7	79721025	79722025	+	956.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113471, exon 9 of 9)	exon (NM_001113471, exon 9 of 9)	-7339.0	NM_001291222	16576.0	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	44.05	29.49	46.25	37.78	38.72	56.27	51.75	28.3	29.98
Merged-chr13-64172312-3	chr13	64171808	64172808	+	956.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 2 of 7)	intron (NM_019986, intron 2 of 7)	10442.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	17.16	12.44	14.8	14.17	9.33	7.23	34.85	24.32	9.37
Merged-chr9-111501856-2	chr9	111501347	111502347	+	956.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62766.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	2.86	5.99	3.7	10.8	0.93	8.04	2.11	0.0	5.0
Merged-chr10-43703264-4	chr10	43702756	43703756	+	956.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-42902.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	10.3	7.37	1.85	11.47	8.4	8.04	23.24	11.5	6.25
Merged-chr12-113216075-2	chr12	113215547	113216547	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30144.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	2.29	0.46	1.85	2.7	5.13	4.82	1.06	2.65	1.25
Merged-chr14-98817203-2	chr14	98816700	98817700	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	228936.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.0	4.61	0.0	8.1	2.33	3.22	2.11	3.1	1.25
Merged-chr1-138928959-2	chr1	138928467	138929467	+	956.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34742.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	2.29	1.84	3.7	2.7	5.6	5.63	3.17	1.33	6.25
Merged-chr4-88696630-3	chr4	88696148	88697148	+	956.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5380.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	11.44	9.68	7.4	10.12	6.53	11.25	3.17	6.19	3.75
Merged-chr17-25140456-2	chr17	25139934	25140934	+	956.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317404, intron 1 of 24)	intron (NM_001317404, intron 1 of 24)	3803.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	6.86	5.99	12.95	27.66	18.66	29.74	52.81	61.46	41.22
Merged-chr14-103016108-3	chr14	103015605	103016605	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	17698.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	9.15	2.76	1.85	14.84	7.93	11.25	14.79	17.24	8.12
Merged-chr5-67426722-3	chr5	67426229	67427229	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164806, intron 1 of 4)	CpG	1070.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	14.3	9.22	22.2	27.66	18.19	20.9	30.63	22.11	14.99
Merged-chr3-84843019-3	chr3	84842512	84843512	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	RLTR31B2|LTR|ERVK	-21133.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	9.72	11.98	1.85	10.12	7.93	4.82	9.51	8.4	6.25
Merged-chr15-75704185-3	chr15	75703683	75704683	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008164)	promoter-TSS (NM_008164)	-105.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	4.58	3.23	5.55	2.7	1.4	3.22	2.11	1.77	2.5
Merged-chr10-16412454-3	chr10	16411960	16412960	+	956.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	620683.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	9.72	12.44	5.55	12.82	9.33	12.86	27.46	18.13	14.99
Merged-chr12-113152029-3	chr12	113151499	113152499	+	956.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007763)	promoter-TSS (NM_007763)	-13.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	33.75	28.11	29.6	40.48	31.72	49.83	19.01	13.71	10.62
Merged-chr10-5288493-3	chr10	5287980	5288980	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347711, intron 55 of 145)	intron (NM_001347711, intron 55 of 145)	-93773.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	14.87	5.07	1.85	8.1	16.79	12.06	13.73	8.84	2.5
Merged-chr18-35022479-3	chr18	35021972	35022972	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68121.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	60.64	47.46	26.82	47.23	74.17	41.8	43.3	30.07	17.49
Merged-chr7-15921948-3	chr7	15921412	15922412	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009156, intron 1 of 5)	intron (NM_009156, intron 1 of 5)	459.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	92.67	72.34	80.47	131.57	104.03	98.87	149.98	141.05	71.2
Merged-chr16-22357982-3	chr16	22357489	22358489	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63001.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	86.95	116.58	52.72	122.12	115.23	88.42	133.08	175.98	58.71
Merged-chr1-151572024-3	chr1	151571519	151572519	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	646.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	178.48	128.56	142.44	159.91	97.97	105.3	164.76	149.01	111.17
Merged-chr1-180402682-3	chr1	180402167	180403167	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-72118.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	367.26	302.74	227.54	387.96	320.02	247.57	305.24	338.7	197.98
Merged-chr1-77826363-3	chr1	77825865	77826865	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-311277.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	13.16	21.66	26.82	29.01	22.39	40.99	23.24	29.63	25.61
Merged-chr1-171231087-3	chr1	171230574	171231574	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 2 of 4)	intron (NM_010185, intron 2 of 4)	3275.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	49.77	46.08	35.15	42.51	22.39	59.48	85.55	63.23	44.97
Merged-chr13-107892145-3	chr13	107891646	107892646	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2082.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	181.91	229.93	106.37	145.06	128.29	172.01	161.6	218.43	106.79
Merged-chr9-116166397-3	chr9	116165880	116166880	+	956.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	8983.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	46.34	71.42	65.67	49.93	46.18	66.71	28.52	29.18	28.1
Merged-chr5-54053654-4	chr5	54053193	54054193	+	956.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	55170.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	33.18	35.48	29.6	25.64	39.19	36.97	34.85	34.49	27.48
Merged-chr7-66309542-4	chr7	66309053	66310053	+	956.736084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	MER89|LTR|ERV1	72171.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	69.22	92.16	58.27	58.03	40.12	65.91	58.09	74.73	59.33
Merged-chr6-50536696-3	chr6	50536205	50537205	+	956.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29769.0	NM_007808	13063.0	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	9.15	3.69	1.85	2.02	1.87	4.82	2.11	1.77	1.25
Merged-chr10-80694811-3	chr10	80694319	80695319	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	7001.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	199.65	162.2	137.82	157.88	104.03	122.18	158.43	217.55	104.92
Merged-chr12-86796030-3	chr12	86795521	86796521	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61652.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	5.72	3.23	7.4	6.75	2.33	2.41	2.11	0.44	3.75
Merged-chr15-73137567-3	chr15	73137074	73138074	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	intron (NM_153178, intron 3 of 18)	47162.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	10.3	10.6	13.87	10.8	5.13	0.8	9.51	3.1	6.87
Merged-chr12-52120467-3	chr12	52119967	52120967	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 3 of 10)	intron (NM_029760, intron 3 of 10)	22721.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	9.15	9.68	9.25	11.47	14.46	12.86	7.39	11.05	3.75
Merged-chr9-123722902-3	chr9	123722402	123723402	+	956.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5277.0	NR_151689	93730.0	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	5.72	5.53	14.8	10.12	5.6	6.43	14.79	6.63	11.24
Merged-chr17-35241131-3	chr17	35240635	35241635	+	956.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019693)	promoter-TSS (NM_019693)	-611.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	299.76	229.93	126.72	239.52	175.41	171.21	194.34	233.91	117.41
Merged-chr2-180043166-3	chr2	180042665	180043665	+	956.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011969)	promoter-TSS (NM_011969)	682.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	117.27	106.44	103.59	112.68	90.97	98.87	141.53	112.75	117.41
Merged-chr7-114461826-3	chr7	114461318	114462318	+	956.695251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	46564.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	25.74	26.26	29.6	49.25	27.99	41.8	44.36	34.05	21.23
Merged-chr5-86118826-3	chr5	86118285	86119285	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172712, intron 31 of 32)	URR1B|DNA|hAT-Charlie	47039.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	141.87	163.12	74.92	97.16	140.42	62.7	175.33	159.62	79.32
Merged-chr3-146642086-1	chr3	146641586	146642586	+	956.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045949, exon 1 of 4)	non-coding (NR_045949, exon 1 of 4)	154.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	2.86	3.23	7.4	5.4	11.66	4.02	4.22	2.65	5.0
Merged-chr1-159201425-3	chr1	159200902	159201902	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-30798.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	16.59	30.41	12.95	20.92	23.33	21.7	25.35	26.97	34.35
Merged-chrUn_JH584304-2362-1	chrUn_JH584304	1862	2862	+	956.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57327.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	62.31	38.03	0.0
Merged-chr14-45050333-3	chr14	45049843	45050843	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62232.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	83.52	79.25	82.32	79.62	51.78	66.71	78.16	58.37	49.96
Merged-chr17-87023621-3	chr17	87023102	87024102	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008838, intron 2 of 5)	intron (NM_008838, intron 2 of 5)	1799.0	NM_008838	18701.0	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	25.74	24.88	12.95	24.29	14.46	32.15	80.27	81.36	21.23
Merged-chr10-22700105-3	chr10	22699607	22700607	+	956.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	29325.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	9.72	8.75	12.02	9.45	6.06	6.43	5.28	3.98	6.25
Merged-chr12-8260462-2	chr12	8259963	8260963	+	956.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172401, intron 4 of 6)	intron (NM_172401, intron 4 of 6)	41491.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	13.16	11.06	18.5	12.82	13.53	8.04	9.51	8.84	13.74
Merged-chr1-170912422-2	chr1	170911909	170912909	+	956.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029984, intron 2 of 5)	intron (NM_001029984, intron 2 of 5)	532.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	1.72	1.84	1.85	3.37	3.27	1.61	0.0	2.21	2.5
Merged-chr1-166921144-2	chr1	166920644	166921644	+	956.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78586.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	8.01	6.45	5.55	8.77	7.0	6.43	13.73	19.01	18.11
Merged-chr12-77270895-3	chr12	77270389	77271389	+	956.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	MTD|LTR|ERVL-MaLR	32150.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	34.32	29.03	9.25	22.94	18.66	9.65	6.34	7.07	11.24
Merged-chr14-21654036-3	chr14	21653533	21654533	+	956.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017479, intron 12 of 16)	MTD|LTR|ERVL-MaLR	60543.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	11.44	11.52	12.95	15.52	9.8	8.04	11.62	10.17	2.5
Merged-chr2-165881091-3	chr2	165880545	165881545	+	956.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	1233.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	84.09	74.19	58.27	56.0	29.39	68.32	71.82	52.62	67.45
Merged-chr10-10555382-3	chr10	10554882	10555882	+	956.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2825.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	86.95	115.66	74.92	87.04	121.29	97.26	133.08	142.82	92.43
Merged-chr6-97417110-3	chr6	97416615	97417615	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	42171.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	25.74	35.48	32.37	25.64	20.99	44.21	29.57	26.09	16.86
Merged-chr10-59589579-3	chr10	59589077	59590077	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	27115.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	45.76	35.48	32.37	39.81	40.59	27.33	46.47	50.85	21.23
Merged-chr6-89289426-3	chr6	89288908	89289908	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3683.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	13.16	10.6	24.05	15.52	7.0	9.65	23.24	19.46	18.11
Merged-chr5-96222111-3	chr5	96221523	96222523	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039084, intron 2 of 6)	MLT1H|LTR|ERVL-MaLR	11908.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	20.59	17.97	20.35	31.04	36.39	44.21	24.29	14.15	10.62
Merged-chr12-112619229-3	chr12	112618754	112619754	+	956.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007421)	promoter-TSS (NM_007421)	-793.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	167.04	152.98	98.97	206.46	190.8	176.83	192.23	233.46	75.57
Merged-chr8-67813790-3	chr8	67813283	67814283	+	956.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	4512.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	10.3	14.28	11.1	10.8	13.53	24.11	16.9	13.71	9.99
Merged-chr3-107106234-3	chr3	107105732	107106732	+	956.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	4665.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	21.74	31.33	22.2	49.25	41.52	38.58	62.31	75.17	31.23
Merged-chr9-14523824-2	chr9	14523325	14524325	+	956.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23206.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	4.0	5.53	1.85	0.67	0.93	4.82	1.06	0.0	2.5
Merged-chr7-74497392-3	chr7	74496884	74497884	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038643, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	57396.0	NM_023908	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	8.58	5.53	12.95	10.8	8.4	12.86	7.39	8.84	15.61
Merged-chr9-58542021-2	chr9	58541516	58542516	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1076.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	7.44	1.84	9.25	4.72	3.73	3.22	3.17	1.33	3.12
Merged-chr11-3178075-2	chr11	3177575	3178575	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	intron (NM_030207, intron 5 of 32)	15388.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	37.76	64.51	99.89	53.3	88.64	118.16	0.0	0.88	119.91
Merged-chr10-98805242-3	chr10	98804744	98805744	+	956.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109398.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	25.74	18.89	22.2	21.59	17.26	28.94	16.9	12.38	14.99
Merged-chr6-6248608-1	chr6	6248108	6249108	+	956.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_136906)	promoter-TSS (NR_136906)	-51.0	NR_136906	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	1.72	4.61	0.0	3.37	5.6	8.04	3.17	4.86	5.0
Merged-chr5-121196959-3	chr5	121196464	121197464	+	956.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5567.0	NM_011202	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	26.89	63.13	77.7	34.41	37.79	24.92	45.42	38.47	51.21
Merged-chr15-62060127-3	chr15	62059637	62060637	+	956.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	20880.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	25.74	25.8	27.75	37.11	18.19	36.17	28.52	24.76	15.61
Merged-chr18-36733730-3	chr18	36733232	36734232	+	956.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-1338.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	70.36	76.95	88.8	56.68	32.19	74.75	76.05	82.69	92.43
Merged-chr10-21847252-3	chr10	21846784	21847784	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34900.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	53.2	28.11	42.55	75.57	62.05	110.12	46.47	57.92	59.33
Merged-chr13-47217455-3	chr13	47216944	47217944	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	23441.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	35.47	46.54	36.07	54.65	47.58	61.89	23.24	19.9	24.98
Merged-chr2-170160351-3	chr2	170159862	170160862	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17687.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	17.16	16.59	12.95	24.96	21.93	20.09	35.91	29.18	26.23
Merged-chr12-40788990-3	chr12	40788482	40789482	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-235108.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	16.02	18.89	26.82	31.04	26.59	21.7	27.46	16.8	9.37
Merged-chr1-180246363-3	chr1	180245856	180246856	+	956.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011183)	promoter-TSS (NM_011183)	-406.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	8.01	8.75	7.4	10.12	5.13	8.04	7.39	4.42	9.99
Merged-chr16-90259967-3	chr16	90259466	90260466	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	24520.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	70.93	80.18	38.85	82.99	67.64	28.94	61.26	45.54	24.36
Merged-chr3-19215899-3	chr3	19215400	19216400	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 5 of 7)	intron (NM_001356295, intron 5 of 7)	27605.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	26.31	15.21	18.5	70.17	95.17	73.14	94.0	131.32	55.58
Merged-chr10-19122410-3	chr10	19121899	19122899	+	956.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19350.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	61.78	58.98	42.55	65.45	47.58	65.11	4.22	1.33	3.75
Merged-chr11-98217128-3	chr11	98216606	98217606	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	13801.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	36.04	71.42	43.47	42.51	43.85	55.46	40.14	71.63	51.21
Merged-chr1-154074291-3	chr1	154073817	154074817	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126870.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	38.9	33.18	37.92	40.48	20.99	57.87	22.18	29.18	30.6
Merged-chr11-110268611-3	chr11	110268087	110269087	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_147219)	TTS (NM_147219)	-16811.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	130.43	120.73	62.9	7.42	14.0	14.47	8.45	7.07	2.5
Merged-chr8-61540031-3	chr8	61539529	61540529	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081390, intron 10 of 19)	intron (NM_001081390, intron 10 of 19)	51140.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	3.43	0.46	4.62	10.12	5.6	8.04	1.06	2.21	1.25
Merged-chr7-106612909-3	chr7	106612406	106613406	+	956.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277180, intron 2 of 2)	intron (NM_001277180, intron 2 of 2)	31739.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	9.72	12.9	4.62	15.52	9.8	9.65	21.12	22.11	18.11
Merged-chr9-40397286-3	chr9	40396781	40397781	+	956.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-20864.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	9.15	14.28	8.32	12.82	11.2	17.68	10.56	7.96	5.62
Merged-chr13-117025780-5	chr13	117025270	117026270	+	956.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081009)	promoter-TSS (NM_001081009)	-254.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	85.81	50.23	52.72	58.03	19.13	27.33	64.43	34.93	22.48
Merged-chr1-177982746-3	chr1	177982260	177983260	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8638.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	61.78	92.16	51.8	89.74	60.65	48.23	107.73	103.02	41.84
Merged-chr17-35220777-3	chr17	35220224	35221224	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010909, exon 4 of 4)	exon (NM_010909, exon 4 of 4)	-14286.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	53.77	47.0	39.77	46.56	35.92	51.44	50.7	46.87	39.35
Merged-chr11-69663388-3	chr11	69662892	69663892	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301710)	promoter-TSS (NM_001301710)	349.0	NR_035455	100316840.0		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	362.11	283.84	266.39	307.0	223.92	240.33	307.35	412.1	203.6
Merged-chr15-75884277-3	chr15	75883784	75884784	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001282443, exon 14 of 14)	exon (NM_001282443, exon 14 of 14)	4439.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	2.29	5.99	3.7	6.75	4.2	3.22	6.34	2.65	7.49
Merged-chr4-141664188-3	chr4	141663689	141664689	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033150)	promoter-TSS (NM_001033150)	-74.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	204.8	173.25	149.84	176.1	181.47	160.76	190.11	172.0	130.53
Merged-chr7-68130099-3	chr7	68129600	68130600	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134133.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	18.31	30.41	25.9	16.87	27.06	36.97	20.07	18.13	25.61
Merged-chr15-5242439-3	chr15	5241930	5242930	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008965, exon 2 of 3)	exon (NM_008965, exon 2 of 3)	1757.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	30.89	26.73	38.85	19.57	7.0	12.86	45.42	25.2	34.97
Merged-chr4-149167315-3	chr4	149166853	149167853	+	956.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081274)	promoter-TSS (NM_001081274)	-648.0	NM_001081274	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	103.54	141.0	90.65	157.21	197.33	156.74	136.25	193.67	80.56
Merged-chr1-131972671-3	chr1	131972179	131973179	+	956.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2070.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	133.29	107.36	137.82	97.83	92.37	137.45	110.9	119.39	84.31
Merged-chr13-20180759-4	chr13	20180101	20181101	+	956.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	90094.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	82.95	98.15	48.1	66.8	53.18	78.77	82.38	62.79	44.34
Merged-chr17-29837674-3	chr17	29837208	29838208	+	956.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 13 of 15)	intron (NM_001081160, intron 13 of 15)	50174.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	5.72	2.3	0.92	6.75	4.67	7.23	5.28	3.98	1.25
Merged-chr1-165663933-3	chr1	165663436	165664436	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178593, intron 2 of 6)	intron (NM_178593, intron 2 of 6)	-29395.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	69.79	58.06	46.25	82.32	46.18	79.58	101.39	56.16	57.46
Merged-chr13-23446029-6	chr13	23445526	23446526	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15009.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	60.07	76.95	79.55	62.75	74.64	53.85	86.61	94.18	52.46
Merged-chr15-50779855-3	chr15	50779341	50780341	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109208.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	17.73	19.81	12.02	31.04	24.72	16.88	25.35	22.55	9.37
Merged-chr14-54606031-3	chr14	54605528	54606528	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028890)	promoter-TSS (NM_028890)	-120.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	25.17	28.57	26.82	41.83	27.52	36.17	84.49	63.23	53.08
Merged-chr5-99267529-3	chr5	99267019	99268019	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14592.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	70.36	105.06	58.27	53.3	28.92	22.51	63.37	93.74	57.46
Merged-chr16-93918528-3	chr16	93918038	93919038	+	956.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019500)	TTS (NM_019500)	11029.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	6.29	2.3	5.55	7.42	1.4	0.0	8.45	7.07	1.25
Merged-chr10-117872824-3	chr10	117872301	117873301	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26827.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	119.56	97.69	47.17	175.43	163.28	118.96	130.97	158.74	71.82
Merged-chr3-9556535-2	chr3	9556037	9557037	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53548.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	6.29	8.29	7.4	12.14	7.46	5.63	4.22	3.54	4.37
Merged-chr2-38485129-2	chr2	38484631	38485631	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26566.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	62.93	91.7	82.32	78.94	61.58	81.99	72.88	89.32	65.58
Merged-chr5-130718603-2	chr5	130718102	130719102	+	956.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	269810.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	13.73	9.68	12.95	7.42	12.13	7.23	2.11	2.65	3.75
Merged-chr7-34126077-3	chr7	34125554	34126554	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207212, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	7214.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	18.31	14.28	13.87	24.96	15.39	11.25	15.84	8.4	6.87
Merged-chr6-67042003-3	chr6	67041503	67042503	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-4596.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	10.87	11.52	7.4	9.45	5.13	6.43	9.51	5.75	7.49
Merged-chr13-63255697-3	chr13	63255236	63256236	+	956.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	15707.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	57.21	55.29	40.7	60.05	53.65	24.92	43.3	44.22	37.47
Merged-chr4-142015191-4	chr4	142014700	142015700	+	956.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2698.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	29.75	17.05	14.8	20.24	10.26	1.61	14.79	6.19	1.87
Merged-chr4-120955837-3	chr4	120955333	120956333	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4132.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	6.86	7.83	1.85	14.17	8.4	5.63	2.11	4.86	2.5
Merged-chr18-34958894-3	chr18	34958405	34959405	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4554.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	128.14	162.2	80.47	131.57	139.02	163.97	134.14	167.14	91.81
Merged-chr2-152115600-3	chr2	152115110	152116110	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10086.0	NM_029688	76650.0	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	16.02	8.29	7.4	7.42	7.0	8.84	10.56	6.63	2.5
Merged-chr10-15300291-3	chr10	15299797	15300797	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-491480.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	21.74	23.04	14.8	14.84	12.6	23.31	20.07	11.5	6.25
Merged-chr15-10873097-3	chr15	10872607	10873607	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44056.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	74.94	96.3	64.75	71.52	39.19	57.07	106.67	99.93	36.22
Merged-chr4-108380391-3	chr4	108379885	108380885	+	956.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 1 of 2)	intron (NM_001099303, intron 1 of 2)	3270.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	4.0	2.76	4.62	8.77	3.27	4.82	3.17	2.21	2.5
Merged-chr16-10434320-3	chr16	10433816	10434816	+	956.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	13046.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	42.9	51.61	57.35	31.04	37.32	59.48	63.37	57.04	38.72
Merged-chr11-5521546-3	chr11	5521042	5522042	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013842, intron 1 of 4)	CpG	901.0	NM_001271730	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	765.98	839.55	525.37	693.61	747.81	511.21	504.86	633.18	382.84
Merged-chr1-127271364-3	chr1	127270861	127271861	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	66375.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	60.64	64.05	42.55	71.52	64.38	60.28	70.76	64.56	53.08
Merged-chr6-38981513-3	chr6	38981015	38982015	+	956.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	62529.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	72.65	51.15	29.6	92.44	50.38	35.37	107.73	98.16	41.84
Merged-chr4-150589253-2	chr4	150588751	150589751	+	956.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62923.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	100.11	114.27	65.67	69.5	43.39	54.66	74.99	78.71	28.1
Merged-chr1-45826988-3	chr1	45826500	45827500	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31834.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	39.47	82.48	63.82	82.99	68.58	76.36	68.65	95.07	49.34
Merged-chr11-106090964-3	chr11	106090472	106091472	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	intron (NM_011947, intron 1 of 15)	6070.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	79.52	54.37	71.22	64.1	34.52	73.14	61.26	49.96	28.73
Merged-chr6-131387727-3	chr6	131387243	131388243	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011733, intron 1 of 8)	intron (NM_011733, intron 1 of 8)	707.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	26.31	14.28	13.87	26.99	14.0	16.88	13.73	7.07	13.74
Merged-chr5-115072293-3	chr5	115071808	115072808	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 2 of 10)	RSINE1|SINE|B4	35654.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	13.16	18.43	13.87	16.87	7.93	12.86	15.84	7.07	6.87
Merged-chr1-127278242-3	chr1	127277747	127278747	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	intron (NM_145128, intron 2 of 17)	73261.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	14.3	23.96	27.75	44.53	36.85	28.94	48.58	25.2	28.1
Merged-chr16-50092977-3	chr16	50092493	50093493	+	956.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20141.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	26.89	21.2	12.95	20.92	20.06	14.47	35.91	26.09	9.37
Merged-chr1-164138839-3	chr1	164138338	164139338	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 9 of 15)	intron (NM_011347, intron 9 of 15)	-12997.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	6.29	3.69	0.92	8.77	3.73	1.61	2.11	2.21	3.75
Merged-chr16-11442705-1	chr16	11442205	11443205	+	956.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	ORR1B1|LTR|ERVL-MaLR	37057.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.0	5.07	5.55	8.77	3.73	3.22	4.22	4.42	6.25
Merged-chr7-135767683-3	chr7	135767181	135768181	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51302.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	26.31	34.1	26.82	33.74	30.32	35.37	47.53	45.1	23.73
Merged-chr3-151746198-1	chr3	151745698	151746698	+	956.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 3 of 7)	ORR1E|LTR|ERVL-MaLR	3761.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	5.72	5.99	8.32	6.75	6.53	4.02	17.96	5.31	12.49
Merged-chr7-115217015-3	chr7	115216531	115217531	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265757.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.0	0.92	1.85	2.02	0.93	1.61	5.28	0.0	2.5
Merged-chr3-41228726-1	chr3	41228226	41229226	+	956.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145680.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	4.0	6.91	11.1	3.37	0.47	4.82	2.11	0.44	2.5
Merged-chr5-123128612-3	chr5	123128130	123129130	+	956.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3999.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	14.87	8.29	8.32	17.54	8.4	10.45	16.9	9.29	11.24
Merged-chr13-92939265-1	chr13	92938765	92939765	+	956.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94478.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	10.3	4.61	5.55	0.0	3.27	1.61	13.73	18.13	2.5
Merged-chr15-76904214-4	chr15	76903779	76904779	+	955.964294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012053, intron 1 of 5)	CpG	208.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	121.85	106.9	83.25	186.9	170.28	97.26	145.75	111.87	53.71
Merged-chr4-131975317-3	chr4	131974828	131975828	+	955.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 10 of 20)	intron (NM_183428, intron 10 of 20)	53557.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	21.74	28.57	41.62	35.09	22.39	53.85	28.52	30.07	19.98
Merged-chr4-40852682-3	chr4	40852145	40853145	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1892.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	209.37	255.74	170.19	208.49	205.26	143.07	298.9	315.27	142.39
Merged-chr2-166907105-3	chr2	166906590	166907590	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023565, intron 1 of 24)	intron (NM_023565, intron 1 of 24)	994.0	NM_023565	110750.0	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	200.22	186.62	132.27	235.48	249.58	143.88	189.06	250.27	114.29
Merged-chr12-35579029-3	chr12	35578535	35579535	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44046.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	8.01	10.6	1.85	6.07	5.13	4.82	6.34	2.65	9.37
Merged-chr12-33302258-3	chr12	33301762	33302762	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-253.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	184.2	183.39	109.14	190.95	167.01	142.27	222.86	239.21	111.17
Merged-chr4-102566662-3	chr4	102566159	102567159	+	955.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-3401.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	41.19	49.3	52.72	19.57	20.53	42.6	30.63	34.93	40.59
Merged-chr7-31149990-3	chr7	31149520	31150520	+	955.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 1 of 18)	intron (NR_153431, intron 1 of 18)	1151.0	NM_027898	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	90.96	69.58	49.95	103.91	62.05	50.64	138.36	75.17	32.48
Merged-chr8-125518508-3	chr8	125518018	125519018	+	955.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25685.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	24.03	9.68	12.95	13.49	16.33	16.08	25.35	11.94	11.87
Merged-chr14-71113400-2	chr14	71112901	71113901	+	955.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-137872.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	13.16	5.99	0.0	2.02	3.73	4.82	5.28	0.0	0.0
Merged-chr8-111337738-4	chr8	111337262	111338262	+	955.908325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310613, intron 1 of 10)	intron (NM_001310613, intron 1 of 10)	443.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	96.68	112.89	108.22	89.74	71.38	125.39	114.07	149.89	86.18
Merged-chr15-39817229-3	chr15	39816735	39817735	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 7 of 9)	intron (NM_001164466, intron 7 of 9)	20190.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	3.43	5.53	7.4	2.7	2.8	6.43	2.11	0.88	5.62
Merged-chr1-46927261-3	chr1	46926764	46927764	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1488.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	44.62	48.38	40.7	33.74	46.65	36.97	25.35	12.38	22.48
Merged-chr9-41072307-3	chr9	41071802	41072802	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	7204.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	28.03	39.63	30.52	19.57	17.26	40.99	41.19	53.06	36.85
Merged-chr12-35319768-3	chr12	35319284	35320284	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124887.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	34.32	39.17	12.95	37.11	36.85	50.64	32.74	20.34	25.61
Merged-chr1-62283813-3	chr1	62283316	62284316	+	955.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-147707.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	14.3	8.29	3.7	10.8	9.8	7.23	11.62	11.5	2.5
Merged-chr4-130899521-3	chr4	130899031	130900031	+	955.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13803.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	40.04	26.26	11.1	27.66	25.19	19.29	43.3	37.58	34.97
Merged-chr10-126990523-3	chr10	126990034	126991034	+	955.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-4996.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	12.59	8.75	7.4	8.1	4.67	10.45	5.28	1.77	1.25
Merged-chr6-100834011-2	chr6	100833554	100834554	+	955.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182939, intron 1 of 8)	CpG	416.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	110.41	81.1	83.25	133.59	78.37	92.44	129.91	63.23	80.56
Merged-chr7-102017475-5	chr7	102017022	102018022	+	955.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010531, intron 2 of 6)	intron (NM_010531, intron 2 of 6)	633.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	268.87	293.06	167.42	354.9	284.57	270.07	410.86	469.58	194.23
Merged-chr7-44262947-3	chr7	44262458	44263458	+	955.85553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1480.0	NR_152170	628854.0	Mm.451981	NR_152170		Gm15517	-	predicted gene 15517	ncRNA	4.0	1.84	3.7	2.7	4.67	1.61	1.06	0.44	1.87
Merged-chr13-43554881-4	chr13	43554352	43555352	+	955.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 2 of 8)	intron (NM_001081059, intron 2 of 8)	5339.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	105.26	88.93	66.6	76.92	51.78	47.42	50.7	49.52	42.47
Merged-chr18-6145072-3	chr18	6144562	6145562	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8964.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	53.77	63.13	57.35	35.09	27.99	37.78	29.57	34.49	48.71
Merged-chr16-57546581-3	chr16	57546069	57547069	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-2673.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	132.14	170.49	100.82	155.86	138.09	162.37	139.42	159.62	86.81
Merged-chr3-105878073-3	chr3	105877566	105878566	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	7208.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	42.33	28.57	39.77	26.31	18.66	21.7	31.69	23.43	27.48
Merged-chr15-89407459-1	chr15	89406959	89407959	+	955.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	ORR1C2-int|LTR|ERVL-MaLR	2804.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	23.45	28.57	20.35	11.47	8.86	15.27	11.62	5.31	11.87
Merged-chr5-146767875-1	chr5	146767375	146768375	+	955.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 2 of 8)	intron (NM_011669, intron 2 of 8)	27081.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	11.44	17.05	36.07	8.1	13.06	28.94	47.53	45.99	36.22
Merged-chr13-51312161-2	chr13	51311664	51312664	+	955.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96454.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	7.44	8.29	12.95	6.75	15.39	11.25	11.62	11.5	6.25
Merged-chr17-5138911-3	chr17	5138407	5139407	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	143833.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	18.88	21.2	18.5	18.89	11.66	16.08	10.56	11.94	9.99
Merged-chr14-27116818-3	chr14	27116326	27117326	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27167.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	7.44	9.68	1.85	16.87	6.06	12.86	5.28	2.65	9.37
Merged-chr12-102432966-3	chr12	102432490	102433490	+	955.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	6823.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	93.24	94.92	94.35	89.74	82.57	120.57	123.57	97.72	57.46
Merged-chr13-116951544-3	chr13	116951056	116952056	+	955.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	73960.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	73.22	61.75	59.2	5.4	7.46	16.08	36.97	32.72	22.48
Merged-chr9-43303191-3	chr9	43302704	43303704	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-7559.0	NM_023655	72169.0	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	14.87	16.13	15.72	15.52	12.13	17.68	3.17	5.75	7.49
Merged-chr18-7869833-3	chr18	7869358	7870358	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360956, exon 1 of 14)	5' UTR (NM_001360956, exon 1 of 14)	145.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	259.71	252.51	299.68	235.48	238.85	211.4	290.45	177.75	196.1
Merged-chr9-123936822-3	chr9	123936332	123937332	+	955.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31860.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	49.77	48.84	40.7	46.56	54.58	69.93	16.9	20.34	21.23
Merged-chr3-145942148-3	chr3	145941658	145942658	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151445, intron 3 of 3)	intron (NR_151445, intron 3 of 3)	4144.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	8.58	10.14	11.1	14.84	14.93	3.22	8.45	16.36	13.12
Merged-chr4-12906853-3	chr4	12906357	12907357	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173746)	promoter-TSS (NM_173746)	20.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	9.72	3.69	1.85	7.42	3.27	4.82	4.22	3.1	1.25
Merged-chr11-32489533-3	chr11	32489022	32490022	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361561, intron 1 of 1)	B4A|SINE|B4	34152.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	17.73	7.37	5.55	12.14	6.53	8.04	12.67	8.84	2.5
Merged-chr1-37357324-3	chr1	37356824	37357824	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-11893.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	43.48	35.48	50.87	49.93	31.26	24.11	38.02	25.65	21.23
Merged-chr1-180293263-3	chr1	180292769	180293769	+	955.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36969.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	18.31	14.75	5.55	14.17	7.46	11.25	15.84	20.34	8.74
Merged-chr3-127792839-3	chr3	127792313	127793313	+	955.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2156.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	148.73	176.02	151.69	163.28	128.29	130.21	161.6	218.43	115.54
Merged-chrX-36645401-3	chrX	36644892	36645892	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081956)	promoter-TSS (NM_001081956)	22.0	NM_001081956	338351.0	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	8.01	2.76	1.85	15.52	12.13	14.47	5.28	3.1	3.12
Merged-chr13-49324477-2	chr13	49323962	49324962	+	955.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15254.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	13.73	13.82	32.37	22.27	14.46	35.37	20.07	5.75	25.61
Merged-chr6-125378310-3	chr6	125377809	125378809	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198604, intron 3 of 16)	intron (NM_198604, intron 3 of 16)	2195.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	9.72	7.83	5.55	4.72	5.13	15.27	4.22	4.42	0.62
Merged-chr12-85712807-3	chr12	85712283	85713283	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26063.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	74.94	40.55	37.92	58.7	41.99	43.4	31.69	40.68	24.98
Merged-chr6-15729421-1	chr6	15728921	15729921	+	955.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8760.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	69.79	88.01	53.65	102.56	102.63	72.34	67.6	59.25	44.34
Merged-chr15-100228327-3	chr15	100227844	100228844	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007497, intron 1 of 6)	CpG	485.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	279.16	263.57	268.24	251.67	266.84	202.55	260.88	218.43	167.37
Merged-chr16-10500913-3	chr16	10500403	10501403	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	MTEb|LTR|ERVL-MaLR	11122.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	8.01	11.52	7.4	4.05	4.2	11.25	16.9	7.07	16.24
Merged-chr13-9874164-3	chr13	9873667	9874667	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108846.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	106.97	75.57	87.87	110.65	81.64	80.38	128.85	91.53	85.56
Merged-chr1-62724643-3	chr1	62724132	62725132	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21315.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	46.91	44.7	29.6	20.24	16.33	10.45	5.28	6.63	6.87
Merged-chr2-156257338-3	chr2	156256845	156257845	+	955.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 4 of 17)	intron (NM_172674, intron 4 of 17)	-55128.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	53.2	75.11	69.37	100.53	78.37	76.36	83.44	87.99	33.1
Merged-chr3-52046241-3	chr3	52045726	52046726	+	955.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	58780.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	118.99	108.75	51.8	95.14	112.43	67.52	115.12	150.78	61.83
Merged-chr19-29414674-3	chr19	29414159	29415159	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	3740.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	20.59	3.23	9.25	16.19	7.93	9.65	15.84	5.75	9.37
Merged-chr2-3641211-3	chr2	3640703	3641703	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72255.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	15.45	11.06	5.55	26.31	8.86	8.84	8.45	5.75	3.12
Merged-chr9-65357124-3	chr9	65356558	65357558	+	955.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016688, intron 4 of 4)	B1_Mus2|SINE|Alu	-4002.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	54.92	52.99	41.62	64.1	57.38	60.28	38.02	55.27	19.36
Merged-chr18-82910760-5	chr18	82910298	82911298	+	955.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183033)	promoter-TSS (NM_183033)	-81.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	248.84	164.04	194.24	213.89	147.42	157.54	193.28	184.38	122.41
Merged-chr11-115000292-2	chr11	114999740	115000740	+	955.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134158, intron 2 of 3)	intron (NM_134158, intron 2 of 3)	1640.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	16.59	11.06	27.75	116.73	60.18	72.34	127.8	134.42	29.98
Merged-chr3-54724159-6	chr3	54723664	54724664	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358017, intron 22 of 24)	intron (NM_001358017, intron 22 of 24)	11200.0	NM_027148	69639.0	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	37.18	35.48	37.0	47.23	33.12	66.71	31.69	19.46	31.85
Merged-chr5-101766949-3	chr5	101766453	101767453	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	1823.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	101.83	164.5	126.72	122.12	102.63	95.65	129.91	161.39	83.69
Merged-chr17-35079998-3	chr17	35079500	35080500	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163192)	TTS (NM_001163192)	3058.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	29.17	27.19	18.5	37.78	26.59	22.51	27.46	21.67	20.61
Merged-chr15-50449762-3	chr15	50449281	50450281	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	439268.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	5.72	8.29	3.7	4.05	6.53	4.82	5.28	6.63	9.99
Merged-chr6-29522993-3	chr6	29522483	29523483	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3642.0	NM_001311083	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	365.54	346.51	265.46	327.91	261.24	266.05	288.34	425.36	197.98
Merged-chr11-119091062-3	chr11	119090591	119091591	+	955.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4854.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	54.35	24.88	9.25	87.04	46.18	24.92	35.91	19.46	11.87
Merged-chr6-108404879-3	chr6	108404374	108405374	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 33 of 61)	L1MB7|LINE|L1	-84869.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	9.15	11.98	12.95	16.19	11.2	10.45	7.39	7.52	9.99
Merged-chr9-72797249-3	chr9	72796746	72797746	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10028.0	NM_175485	235472.0	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	8.01	8.75	3.7	6.75	7.46	4.82	15.84	13.71	11.24
Merged-chr5-118560871-3	chr5	118560382	118561382	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 1 of 30)	CpG-11438	163.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	53.77	42.39	68.45	55.33	36.85	64.3	59.15	27.86	37.47
Merged-chr2-52298144-2	chr2	52297627	52298627	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	7125.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	3.43	5.53	2.77	24.29	12.6	19.29	16.9	19.01	22.48
Merged-chr11-19998187-3	chr11	19997680	19998680	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033523, exon 2 of 6)	exon (NM_033523, exon 2 of 6)	73738.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	8.01	9.68	0.0	6.07	6.53	2.41	6.34	7.52	5.0
Merged-chr13-64422162-1	chr13	64421662	64422662	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10391.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	3.43	4.15	12.95	2.7	7.93	4.82	1.06	0.88	4.37
Merged-chr13-28481164-3	chr13	28480658	28481658	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	229715.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	6.86	6.45	3.7	14.84	8.4	4.02	6.34	2.21	7.49
Merged-chr19-21646259-3	chr19	21645801	21646801	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025423, intron 1 of 3)	MTD|LTR|ERVL-MaLR	6490.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	45.19	31.79	53.65	20.92	38.25	47.42	44.36	22.99	33.1
Merged-chr3-53098333-1	chr3	53097833	53098833	+	955.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	56786.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	1.72	5.07	1.85	11.47	7.0	17.68	2.11	2.65	1.25
Merged-chr15-72837544-2	chr15	72837031	72838031	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27207.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	73.22	92.16	66.6	69.5	53.18	49.83	121.46	110.54	84.31
Merged-chr12-35039791-3	chr12	35039290	35040290	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7399.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	117.84	204.59	127.64	91.76	114.76	105.3	105.62	147.68	74.32
Merged-chr8-46640022-3	chr8	46639514	46640514	+	955.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009810)	TTS (NM_009810)	22723.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	42.9	65.43	36.07	53.3	51.78	55.46	54.92	56.6	44.97
Merged-chr2-148523142-3	chr2	148522647	148523647	+	955.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79612.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	53.2	48.84	49.95	64.77	44.32	76.36	49.64	63.67	61.2
Merged-chr4-133174531-3	chr4	133174020	133175020	+	955.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-21135.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	140.73	132.71	74.92	143.71	93.77	121.37	137.3	164.49	73.69
Merged-chr11-45678873-3	chr11	45678383	45679383	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129200.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.29	7.83	3.7	6.75	4.67	0.8	4.22	2.21	8.12
Merged-chr1-87608556-3	chr1	87608060	87609060	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11752.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	15.45	7.83	12.02	10.12	8.4	8.04	6.34	6.63	2.5
Merged-chr4-122884192-3	chr4	122883700	122884700	+	955.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	1876.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	131.0	151.6	149.84	106.61	132.49	116.55	155.26	168.91	93.68
Merged-chr11-63813050-3	chr11	63812561	63813561	+	955.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D2|LTR|ERVK	109223.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	29.75	23.5	12.02	20.92	18.19	11.25	43.3	25.2	22.48
Merged-chr3-115992246-3	chr3	115991735	115992735	+	955.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023214, intron 3 of 10)	intron (NM_023214, intron 3 of 10)	12333.0	NR_130332	100316705.0		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	25.17	33.18	24.05	21.59	16.79	20.9	38.02	33.16	26.85
Merged-chr1-72014014-2	chr1	72013509	72014509	+	955.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8814.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	4.58	2.76	0.92	8.77	4.2	4.02	3.17	3.1	6.25
Merged-chr6-83322124-3	chr6	83321628	83322628	+	955.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3911.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	19.45	24.88	20.35	22.27	14.0	18.49	27.46	26.97	34.35
Merged-chr11-97400507-3	chr11	97400005	97401005	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37954.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.72	7.83	11.1	8.1	2.33	6.43	2.11	5.31	4.37
Merged-chr8-85298712-3	chr8	85298212	85299212	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019716)	promoter-TSS (NM_019716)	785.0	NM_022997	65114.0	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	116.7	133.63	90.65	95.81	96.57	114.14	78.16	51.73	66.82
Merged-chr6-99024784-3	chr6	99024289	99025289	+	955.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	3509.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	21.17	19.81	9.25	14.84	6.06	0.0	14.79	11.5	2.5
Merged-chr5-80706861-1	chr5	80706361	80707361	+	955.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-313710.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.72	2.76	0.0	0.67	4.67	1.61	7.39	5.31	2.5
Merged-chr3-50906085-1	chr3	50905585	50906585	+	955.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-318362.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.0	2.76	0.0	1.35	2.33	0.8	6.34	0.88	3.12
Merged-chr8-70611427-3	chr8	70610945	70611945	+	955.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3131.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	320.35	307.34	239.56	227.38	263.11	164.78	261.93	356.83	206.72
Merged-chr13-114953609-3	chr13	114953111	114954111	+	955.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21511.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	4.0	4.15	11.1	4.05	3.73	2.41	2.11	0.44	1.87
Merged-chr10-128093338-3	chr10	128092833	128093833	+	955.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 1 of 29)	CpG	550.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	89.24	90.77	121.17	68.15	65.78	80.38	103.51	94.18	61.83
Merged-chr3-28027083-3	chr3	28026574	28027574	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 3 of 25)	intron (NM_008875, intron 3 of 25)	42903.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	40.62	42.39	36.07	51.95	38.72	60.28	82.38	73.4	44.97
Merged-chr10-24164313-3	chr10	24163815	24164815	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14998.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	180.2	197.22	123.94	179.47	107.76	110.92	147.87	153.87	89.93
Merged-chr8-13627774-3	chr8	13627244	13628244	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	49843.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	16.02	12.44	10.17	15.52	10.26	19.29	12.67	5.75	11.24
Merged-chr8-72572074-3	chr8	72571599	72572599	+	955.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151663, exon 1 of 3)	non-coding (NR_151663, exon 1 of 3)	276.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	91.53	117.5	80.47	89.74	121.29	111.73	106.67	142.82	62.45
Merged-chr4-150341008-1	chr4	150340508	150341508	+	955.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59092.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	52.63	47.46	39.77	68.15	83.51	75.56	33.8	46.87	15.61
Merged-chr3-15128543-2	chr3	15128029	15129029	+	955.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	157328.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	7.44	13.82	3.7	9.45	8.86	15.27	6.34	3.54	5.0
Merged-chr15-53399829-2	chr15	53399339	53400339	+	955.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-53656.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	111.55	124.87	90.65	159.91	181.94	162.37	165.82	230.37	136.15
Merged-chr1-59764041-3	chr1	59763501	59764501	+	955.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007561)	promoter-TSS (NM_007561)	-278.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	193.35	210.58	141.52	162.61	150.22	178.44	191.17	171.12	171.75
Merged-chr3-61409845-3	chr3	61409359	61410359	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45352.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	68.65	66.81	47.17	62.07	52.25	86.81	82.38	44.22	86.81
Merged-chr12-55416281-3	chr12	55415770	55416770	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 6 of 6)	intron (NM_001310583, intron 6 of 6)	17445.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	94.96	98.15	83.25	97.16	90.5	114.14	106.67	138.84	75.57
Merged-chr17-35049748-3	chr17	35049231	35050231	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033444)	promoter-TSS (NM_033444)	-512.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	121.85	98.15	101.74	106.61	71.84	106.9	144.7	180.4	133.02
Merged-chr14-34549504-3	chr14	34548993	34549993	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039071, intron 8 of 12)	CpG	-26692.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	6.86	5.53	0.0	8.1	4.67	0.0	13.73	1.77	2.5
Merged-chr13-37453335-3	chr13	37452814	37453814	+	955.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107969.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	29.75	17.05	5.55	20.92	14.46	12.06	26.4	15.48	6.87
Merged-chr15-74930960-3	chr15	74930472	74931472	+	955.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-24079.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	101.83	140.54	102.67	70.17	75.11	89.22	180.61	213.57	94.93
Merged-chr8-70767939-3	chr8	70767441	70768441	+	955.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008841)	TTS (NM_008841)	-1278.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	381.56	328.08	294.14	298.23	269.18	292.58	448.88	550.94	240.44
Merged-chr11-3129312-3	chr11	3128752	3129752	+	955.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 4 of 6)	intron (NR_003517, intron 4 of 6)	5231.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	18.31	18.89	45.32	16.19	19.13	42.6	0.0	0.44	35.6
Merged-chr7-27472918-3	chr7	27472422	27473422	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133210)	promoter-TSS (NM_133210)	-918.0	NM_133210	170742.0	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	120.7	143.76	118.39	132.24	97.03	113.33	181.66	155.2	110.54
Merged-chr11-118202744-3	chr11	118202194	118203194	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10048.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	67.5	56.22	74.92	92.44	61.58	97.26	70.76	64.11	34.35
Merged-chr14-65112963-3	chr14	65112480	65113480	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-14874.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	27.46	35.48	38.85	37.11	23.33	38.58	42.25	38.03	38.72
Merged-chr2-60892375-3	chr2	60891879	60892879	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-10941.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	36.61	29.03	33.3	31.04	19.13	38.58	60.2	53.06	36.85
Merged-chr6-31427436-3	chr6	31426961	31427961	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 3 of 17)	intron (NM_013791, intron 3 of 17)	28633.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	12.01	12.44	9.25	6.75	12.13	10.45	15.84	10.17	11.24
Merged-chr2-118961727-3	chr2	118961248	118962248	+	955.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35251.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	13.16	3.23	3.7	7.42	4.2	0.0	42.25	19.9	13.74
Merged-chr15-91194759-3	chr15	91194245	91195245	+	955.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-2738.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	23.45	19.35	37.92	20.92	20.06	12.06	45.42	27.41	28.1
Merged-chr9-90040529-3	chr9	90040023	90041023	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-13744.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	37.76	33.18	27.75	35.76	23.79	20.09	20.07	19.01	13.74
Merged-chr10-18048423-3	chr10	18047924	18048924	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7516.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	17.16	6.91	9.25	10.8	9.33	12.06	4.22	4.42	5.0
Merged-chr8-109799503-3	chr8	109798986	109799986	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	20903.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	10.87	12.44	5.55	13.49	8.86	16.08	6.34	11.5	13.12
Merged-chr7-24902094-3	chr7	24901584	24902584	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008488)	promoter-TSS (NM_008488)	-902.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	34.9	27.65	31.45	31.71	27.06	40.99	45.42	34.05	13.74
Merged-chr10-93950143-3	chr10	93949636	93950636	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30C_MM|LTR|ERV1	13727.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	16.02	13.36	15.72	19.57	12.6	20.9	52.81	57.04	35.6
Merged-chr19-32077573-3	chr19	32077096	32078096	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	25544.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	12.01	14.75	8.32	10.8	14.0	17.68	15.84	7.07	3.75
Merged-chr7-44850411-3	chr7	44849932	44850932	+	955.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030488)	TTS (NR_030488)	425.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	192.78	153.9	167.42	178.13	148.35	201.75	201.73	178.64	121.16
Merged-chr9-26806530-2	chr9	26806032	26807032	+	955.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310768)	promoter-TSS (NM_001310768)	-64.0	NM_153803	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	4.58	0.92	1.85	1.35	2.33	1.61	5.28	0.44	3.75
Merged-chr2-5615052-2	chr2	5614541	5615541	+	955.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MIRb|SINE|MIR	61005.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	21.74	28.57	21.27	62.75	29.86	32.15	34.85	28.3	23.11
Merged-chr2-127391561-3	chr2	127391075	127392075	+	955.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	28289.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	6.29	10.14	14.8	13.49	5.13	13.66	13.73	8.84	11.24
Merged-chr12-117534076-3	chr12	117533590	117534590	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	CpG	17611.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	14.87	4.15	3.7	26.31	6.06	5.63	54.92	19.46	18.11
Merged-chr1-74997466-3	chr1	74996951	74997951	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029342, intron 2 of 4)	MTC|LTR|ERVL-MaLR	-45779.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	22.31	20.74	34.22	20.24	16.79	23.31	28.52	23.88	16.24
Merged-chr7-25283832-3	chr7	25283321	25284321	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027882, intron 1 of 19)	intron (NM_027882, intron 1 of 19)	1642.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	17.16	18.43	30.52	24.29	20.99	33.76	42.25	29.18	30.6
Merged-chr15-62382439-3	chr15	62381934	62382934	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162983.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	18.88	25.34	16.65	23.62	18.66	36.97	15.84	11.94	21.23
Merged-chr8-20424314-3	chr8	20423817	20424817	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028428, intron 1 of 5)	CpG	497.0	NR_028428	381598.0	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	29.75	14.75	9.25	29.01	25.66	12.86	35.91	21.67	9.37
Merged-chr7-49764213-3	chr7	49763730	49764730	+	955.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	4718.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	28.6	48.84	47.17	66.12	54.58	57.87	66.54	53.06	31.23
Merged-chr9-96438188-3	chr9	96437645	96438645	+	955.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40530.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	98.39	126.25	63.82	158.56	137.62	141.47	128.85	145.92	63.7
Merged-chr10-8945304-1	chr10	8944804	8945804	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59234.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.58	3.69	0.0	2.02	2.8	3.22	0.0	1.77	2.5
Merged-chr18-60727591-3	chr18	60727083	60728083	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348103)	promoter-TSS (NM_001348103)	-17.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	74.37	60.36	59.2	68.15	52.72	37.78	58.09	58.81	39.35
Merged-chr1-184665520-1	chr1	184665020	184666020	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46977.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	6.86	8.29	10.17	13.49	8.4	9.65	9.51	4.42	2.5
Merged-chr13-107919778-3	chr13	107919262	107920262	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29698.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	20.02	20.74	20.35	26.99	13.06	21.7	20.07	9.29	11.87
Merged-chr18-65714106-1	chr18	65713606	65714606	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177028, intron 3 of 14)	intron (NM_177028, intron 3 of 14)	15838.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	2.29	4.15	1.85	3.37	6.53	1.61	3.17	5.31	1.87
Merged-chr16-20371919-2	chr16	20371396	20372396	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013790, intron 17 of 29)	intron (NM_013790, intron 17 of 29)	-46492.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	86.38	86.17	25.9	106.61	126.89	61.89	74.99	59.69	23.73
Merged-chr1-160157437-1	chr1	160156937	160157937	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR85b|LTR|Gypsy?	-3862.0	NM_177839	329278.0	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	TN-W|Tnw|tenascin-W	tenascin N	protein-coding	0.57	0.46	3.7	8.77	10.73	11.25	2.11	1.33	3.75
Merged-chr1-153952153-1	chr1	153951653	153952653	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	52224.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	6.29	2.76	6.47	7.42	3.73	4.82	1.06	1.33	11.24
Merged-chrX-134757041-3	chrX	134756546	134757546	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106061)	promoter-TSS (NR_106061)	295.0	NM_001358521	71703.0	Mm.67949	NM_027870	ENSMUSG00000049047	Armcx3	1200004E24Rik|AI450003|ALEX3	armadillo repeat containing, X-linked 3	protein-coding	121.85	165.88	54.57	129.55	170.28	127.8	121.46	118.5	51.21
Merged-chr14-60757902-3	chr14	60757419	60758419	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10215.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	8.58	12.9	5.55	10.8	9.8	13.66	13.73	11.05	9.99
Merged-chr19-21441027-2	chr19	21440509	21441509	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	L1MC4|LINE|L1	31652.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	1.72	4.15	1.85	7.42	8.4	19.29	5.28	1.33	7.49
Merged-chr1-42866199-1	chr1	42865699	42866699	+	955.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023514, intron 2 of 10)	RLTR9A3|LTR|ERVK	14966.0	NM_023514	69527.0	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	7.44	4.15	2.77	6.75	4.67	14.47	5.28	7.52	2.5
Merged-chr10-67636724-3	chr10	67636233	67637233	+	955.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64774.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	55.49	35.48	30.52	37.78	32.66	32.15	67.6	77.82	43.72
Merged-chr4-46039215-3	chr4	46038720	46039720	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021883)	promoter-TSS (NM_021883)	-2.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	6.86	12.44	5.55	8.1	9.8	20.09	6.34	4.42	4.37
Merged-chr8-39650163-3	chr8	39649655	39650655	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7477.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	29.75	47.0	38.85	53.3	48.52	49.83	26.4	33.16	31.23
Merged-chr3-90446597-3	chr3	90446126	90447126	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12990.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	40.62	41.01	37.92	66.8	53.65	84.4	54.92	36.26	52.46
Merged-chr7-30909039-3	chr7	30908559	30909559	+	954.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346085, exon 5 of 11)	exon (NM_001346085, exon 5 of 11)	5262.0	NM_001346089	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	16.59	19.81	20.35	24.29	17.73	30.54	38.02	26.97	23.73
Merged-chr10-120125329-3	chr10	120124843	120125843	+	954.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12378.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	10.87	11.06	7.4	12.14	9.8	9.65	10.56	3.54	9.37
Merged-chr4-93520929-3	chr4	93520432	93521432	+	954.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-185421.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	10.87	26.73	14.8	17.54	20.06	24.11	24.29	15.92	16.86
Merged-chr15-97949861-3	chr15	97949373	97950373	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14356.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	51.48	58.52	62.9	50.6	36.39	52.25	78.16	60.13	28.73
Merged-chr12-71016631-3	chr12	71016107	71017107	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045055)	promoter-TSS (NR_045055)	640.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	181.91	161.74	139.67	120.1	116.16	109.32	149.98	129.11	129.28
Merged-chr1-180889969-3	chr1	180889459	180890459	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3149.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	6.29	9.22	11.1	11.47	8.86	8.04	9.51	11.94	17.49
Merged-chr7-102347556-3	chr7	102347060	102348060	+	954.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	79736.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	7.44	11.52	0.0	12.14	7.46	14.47	10.56	8.4	4.37
Merged-chr1-149958110-2	chr1	149957663	149958663	+	954.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	3127.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	127.57	146.53	70.3	127.52	125.49	94.04	107.73	122.04	67.45
Merged-chr2-158130684-5	chr2	158130158	158131158	+	954.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 6 of 12)	intron (NM_009373, intron 6 of 12)	15734.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	45.76	28.11	23.12	46.56	40.12	49.03	60.2	37.58	43.09
Merged-chr11-3128441-2	chr11	3127940	3128940	+	954.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	4419.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	12.59	25.8	34.22	28.34	25.19	65.91	0.0	0.44	46.22
Merged-chr4-116150435-4	chr4	116149957	116150957	+	954.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290658)	promoter-TSS (NM_001290658)	-61.0	NM_029786	68273.0	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	37.18	40.55	74.0	43.86	71.84	93.24	44.36	48.2	37.47
Merged-chr16-33963872-3	chr16	33963373	33964373	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009471, exon 2 of 6)	exon (NM_009471, exon 2 of 6)	3165.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	23.45	19.81	23.12	41.83	21.93	15.27	17.96	18.57	8.12
Merged-chr19-46589333-1	chr19	46588833	46589833	+	954.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053196, intron 6 of 11)	intron (NM_053196, intron 6 of 11)	-9773.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.15	4.61	14.8	1.35	2.33	6.43	32.74	33.16	26.85
Merged-chr5-134106053-3	chr5	134105568	134106568	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	6320.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	14.3	10.14	12.95	12.14	11.2	14.47	19.01	11.94	9.99
Merged-chr12-81907815-1	chr12	81907315	81908315	+	954.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	47785.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	6.86	2.76	11.1	6.75	1.4	4.02	6.34	1.77	8.74
Merged-chr4-132798132-3	chr4	132797636	132798636	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1772.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	80.66	79.25	47.17	75.57	47.58	86.81	89.78	87.55	51.21
Merged-chr1-132355973-3	chr1	132355490	132356490	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001311108)	TTS (NM_001311108)	11958.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	15.45	13.82	12.02	16.19	4.2	21.7	14.79	17.69	8.12
Merged-chr4-128611087-3	chr4	128610577	128611577	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-979.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	91.53	94.0	64.75	67.47	57.38	62.7	32.74	38.47	15.61
Merged-chr14-75068898-3	chr14	75068416	75069416	+	954.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	52889.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	70.36	60.82	54.57	83.66	62.98	71.54	105.62	101.7	84.31
Merged-chr3-108537482-3	chr3	108536987	108537987	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029314)	promoter-TSS (NM_029314)	-97.0	NM_029314	75504.0	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	4.0	2.3	3.7	2.7	2.8	0.0	3.17	2.65	6.25
Merged-chr2-69803009-3	chr2	69802505	69803505	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	13268.0	NM_028521	73373.0	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	1.14	1.84	2.77	4.72	1.4	4.82	5.28	1.77	6.87
Merged-chr13-28843060-3	chr13	28842585	28843585	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	42337.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	24.6	14.28	18.5	27.66	25.66	30.54	19.01	12.38	10.62
Merged-chr14-120172192-3	chr14	120171613	120172613	+	954.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103556.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	14.3	18.89	10.17	15.52	20.53	24.11	9.51	12.38	21.86
Merged-chr3-107062842-1	chr3	107062342	107063342	+	954.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23338.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	2.86	3.23	0.0	3.37	3.27	4.82	1.06	4.86	2.5
Merged-chr6-108504947-3	chr6	108504460	108505460	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	intron (NM_010585, intron 53 of 61)	15217.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	152.74	170.49	55.5	210.51	217.86	139.06	157.37	194.11	55.58
Merged-chr10-83946722-3	chr10	83946226	83947226	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153971.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	12.59	15.21	18.5	24.29	23.79	12.86	21.12	15.03	7.49
Merged-chr1-152623072-3	chr1	152622591	152623591	+	954.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	2126.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	109.83	104.14	81.4	128.2	97.03	104.49	149.98	114.08	81.81
Merged-chr3-14832996-2	chr3	14832489	14833489	+	954.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24624.0	NM_009799	12346.0	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	11.44	18.89	12.95	18.89	23.33	12.06	4.22	7.52	6.25
Merged-chr6-125279949-3	chr6	125279452	125280452	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009446, intron 4 of 4)	intron (NM_009446, intron 4 of 4)	6129.0	NM_009446	22144.0	Mm.270295	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	7.44	2.3	3.7	6.75	1.87	2.41	9.51	6.19	8.74
Merged-chr8-82459214-1	chr8	82458714	82459714	+	954.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56628.0	NM_008357	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.0	0.0	0.0	0.0	0.47	0.0	5.28	5.31	2.5
Merged-chr14-103363333-3	chr14	103362834	103363834	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16534.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	1.72	3.23	0.0	8.77	2.33	0.0	6.34	4.42	4.37
Merged-chr17-83640790-3	chr17	83640295	83641295	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8900.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	19.45	15.67	24.97	37.11	11.66	22.51	31.69	19.46	14.99
Merged-chr11-50225301-3	chr11	50224801	50225801	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145926)	promoter-TSS (NM_145926)	-34.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	251.7	193.07	153.54	250.32	193.13	215.42	197.51	167.58	125.53
Merged-chr2-169774653-1	chr2	169774153	169775153	+	954.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	141007.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	2.86	1.38	0.0	5.4	0.47	2.41	36.97	22.99	2.5
Merged-chr2-30942784-3	chr2	30942269	30943269	+	954.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10232.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	64.07	57.14	53.65	66.12	48.98	64.3	52.81	60.58	36.85
Merged-chr18-70652321-3	chr18	70651760	70652760	+	954.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83968.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	2.29	1.84	0.0	9.45	3.73	4.02	1.06	2.65	0.0
Merged-chr4-128727927-3	chr4	128727427	128728427	+	954.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	CpG	356.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	275.16	253.43	259.91	226.03	164.68	168.8	282.0	258.23	152.38
Merged-chr3-96414749-3	chr3	96414211	96415211	+	954.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001579, exon 1 of 1)	non-coding (NR_001579, exon 1 of 1)	122.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	125.28	141.92	128.57	145.06	126.42	78.77	166.88	114.52	68.07
Merged-chr16-85801496-1	chr16	85800996	85801996	+	954.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	1617.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	8.01	3.69	0.0	37.78	16.33	10.45	4.22	3.98	0.0
Merged-chr2-32737266-3	chr2	32736753	32737753	+	954.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027529, intron 2 of 2)	intron (NM_027529, intron 2 of 2)	3763.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	2.29	3.69	6.47	4.05	4.2	4.82	5.28	3.98	2.5
Merged-chr2-52038052-2	chr2	52037563	52038563	+	954.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009398)	promoter-TSS (NM_009398)	-50.0	NM_009398	21930.0	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	3.43	1.84	7.4	1.35	2.8	0.8	1.06	2.21	0.0
Merged-chr18-83422011-3	chr18	83421511	83422511	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-96127.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	4.58	18.43	10.17	15.52	20.53	36.17	17.96	11.05	14.36
Merged-chr10-96338785-3	chr10	96338284	96339284	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112577.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	86.38	48.84	43.47	62.75	41.99	49.03	59.15	37.14	28.73
Merged-chr5-24908884-3	chr5	24908357	24909357	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170556)	promoter-TSS (NM_001170556)	-348.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	16.59	11.06	5.55	19.57	22.86	31.35	13.73	3.98	3.12
Merged-chr16-23272978-3	chr16	23272431	23273431	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-17539.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	159.03	144.23	107.29	175.43	121.76	114.14	100.34	127.34	103.67
Merged-chr5-28269893-3	chr5	28269399	28270399	+	954.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24111.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	6.29	7.83	5.55	6.07	9.33	4.82	8.45	7.07	3.75
Merged-chr19-18639168-2	chr19	18638667	18639667	+	954.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 2 of 8)	intron (NM_145497, intron 2 of 8)	7151.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	22.88	9.22	9.25	33.06	24.26	19.29	13.73	4.86	3.75
Merged-chr7-141558368-3	chr7	141557871	141558871	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3809.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	38.9	40.55	30.52	41.83	35.92	64.3	27.46	23.43	43.09
Merged-chr8-26690129-3	chr8	26689618	26690618	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134305.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	45.19	41.47	30.52	57.35	40.12	40.19	113.01	100.81	75.57
Merged-chr14-21853585-3	chr14	21853087	21854087	+	954.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176925, intron 2 of 2)	intron (NM_176925, intron 2 of 2)	-4677.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	4.0	9.22	18.5	6.07	8.4	4.02	13.73	3.98	8.74
Merged-chr10-122741019-3	chr10	122740515	122741515	+	954.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	MTC|LTR|ERVL-MaLR	61700.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	26.89	32.25	25.9	23.62	14.93	33.76	38.02	41.56	25.61
Merged-chr3-105877654-3	chr3	105877127	105878127	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	L1MEc|LINE|L1	6769.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	38.9	29.49	30.52	32.39	23.33	34.56	32.74	19.01	24.36
Merged-chr6-37258725-1	chr6	37258225	37259225	+	954.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	41251.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	9.72	3.69	1.85	6.75	8.4	4.82	1.06	1.33	3.75
Merged-chr6-76269152-2	chr6	76268652	76269652	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-973325.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	46.34	52.99	40.7	62.07	47.58	60.28	26.4	30.07	19.98
Merged-chr11-113617815-2	chr11	113617324	113618324	+	954.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1657.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	4.58	2.76	5.55	3.37	3.27	5.63	2.11	3.1	3.75
Merged-chr14-73179304-3	chr14	73178807	73179807	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 14 of 14)	intron (NM_134083, intron 14 of 14)	27544.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	54.35	72.8	47.17	82.99	82.11	93.24	72.88	71.19	43.72
Merged-chr5-113636046-3	chr5	113635537	113636537	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7566.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	122.99	145.61	110.07	157.21	155.81	155.13	250.32	205.61	109.92
Merged-chr2-34771219-2	chr2	34770755	34771755	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022310)	promoter-TSS (NM_022310)	-835.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	483.96	405.95	221.06	375.14	324.22	229.88	362.27	542.54	212.96
Merged-chr8-88142026-3	chr8	88141529	88142529	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172757, intron 4 of 14)	intron (NM_172757, intron 4 of 14)	3823.0	NR_106039	102465649.0		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	29.75	29.03	9.25	18.22	11.2	23.31	31.69	29.18	24.98
Merged-chr1-134803779-3	chr1	134803265	134804265	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015606)	promoter-TSS (NR_015606)	-44.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	66.93	72.34	57.35	33.06	34.99	44.21	26.4	25.2	28.1
Merged-chr16-15948465-2	chr16	15947959	15948959	+	954.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	61173.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	20.59	24.88	35.15	28.34	23.33	32.96	33.8	18.57	18.11
Merged-chr11-87853294-3	chr11	87852845	87853845	+	954.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039684, intron 1 of 17)	intron (NM_001039684, intron 1 of 17)	120.0	NM_001039684	380718.0	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3|avc6	Meckel syndrome, type 1	protein-coding	25.17	21.66	38.85	22.94	23.79	39.39	42.25	30.07	18.11
Merged-chr10-15262556-3	chr10	15262083	15263083	+	954.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	502294.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	13.16	12.44	5.55	24.29	11.66	9.65	7.39	9.29	7.49
Merged-chr2-119047025-5	chr2	119046518	119047518	+	954.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029617)	promoter-TSS (NM_029617)	-101.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	90.96	55.29	53.65	85.69	53.65	38.58	137.3	124.25	64.95
Merged-chr5-117494570-3	chr5	117494063	117495063	+	954.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80561.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	66.93	65.43	33.3	85.01	66.71	92.44	88.72	103.02	50.59
Merged-chr9-64775665-3	chr9	64775171	64776171	+	954.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35340.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	49.77	44.24	31.45	60.05	37.32	61.89	15.84	28.74	29.35
Merged-chr16-13438111-3	chr16	13437623	13438623	+	954.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11400.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	51.48	60.36	22.2	57.35	52.25	36.17	25.35	33.16	6.87
Merged-chr11-70376307-3	chr11	70375733	70376733	+	954.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24202.0	NM_009660	11687.0	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	58.35	56.22	49.95	56.68	34.06	65.91	70.76	86.22	36.85
Merged-chr1-80609838-3	chr1	80609332	80610332	+	954.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	L1MA8|LINE|L1	55520.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	12.59	13.36	7.4	22.94	6.53	21.7	10.56	9.73	16.86
Merged-chr8-84989538-3	chr8	84989032	84990032	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1063.0	NM_133255	170833.0	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	72.65	66.81	44.4	71.52	38.72	36.17	62.31	48.2	35.6
Merged-chr2-25581909-3	chr2	25581402	25582402	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1803.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	69.22	43.31	24.97	91.09	77.91	74.75	63.37	89.76	54.33
Merged-chr18-4247474-3	chr18	4246976	4247976	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	81644.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.29	7.83	3.7	4.05	6.06	4.82	4.22	2.65	0.62
Merged-chr1-149891270-3	chr1	149890768	149891768	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	31171.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	18.88	10.6	12.95	26.99	21.93	24.92	19.01	11.5	21.23
Merged-chr19-32988923-3	chr19	32988409	32989409	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168203.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	54.35	89.39	57.35	70.17	63.45	50.64	123.57	137.07	48.71
Merged-chr14-31402831-3	chr14	31402271	31403271	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	MTD|LTR|ERVL-MaLR	14906.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	151.59	151.14	101.74	231.43	174.94	181.66	138.36	168.91	93.05
Merged-chr10-78303786-3	chr10	78303284	78304284	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	36423.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	79.52	64.97	48.1	82.99	53.65	44.21	54.92	27.41	31.23
Merged-chr13-47231272-3	chr13	47230752	47231752	+	954.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	37249.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	175.05	158.05	129.49	211.86	165.61	178.44	109.84	155.2	86.81
Merged-chr16-17727403-3	chr16	17726903	17727903	+	954.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4456.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	33.18	31.33	27.75	31.04	35.92	41.8	41.19	34.05	29.98
Merged-chr16-91476555-2	chr16	91476043	91477043	+	954.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-8672.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	248.84	147.91	133.19	209.84	135.75	101.28	11.62	11.94	4.37
Merged-chr19-41334697-3	chr19	41334187	41335187	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	50383.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	155.6	168.19	141.52	146.41	113.36	136.64	189.06	214.01	101.17
Merged-chr13-51071525-3	chr13	51071049	51072049	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29178.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	102.4	85.71	97.12	101.21	67.64	102.08	143.64	148.57	80.56
Merged-chr4-3483808-1	chr4	3483308	3484308	+	954.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-53282.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	16.02	29.49	18.5	25.64	41.05	46.62	13.73	17.69	17.49
Merged-chr6-115722416-3	chr6	115721926	115722926	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	36573.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	15.45	7.83	14.8	9.45	5.6	2.41	11.62	11.94	10.62
Merged-chr7-25132514-3	chr7	25132018	25133018	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163555)	promoter-TSS (NM_001163555)	-58.0	NM_001163554	18987.0	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	45.76	57.6	76.77	58.7	46.65	102.88	88.72	101.7	58.08
Merged-chr18-4304229-1	chr18	4303729	4304729	+	954.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48724.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	24.6	10.14	26.82	20.24	20.53	11.25	27.46	22.55	18.74
Merged-chr5-64298489-3	chr5	64298041	64299041	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	68184.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	37.18	21.2	37.0	37.78	23.33	20.09	79.21	91.53	46.22
Merged-chr16-32202420-1	chr16	32201920	32202920	+	954.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	22620.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	90.96	70.04	44.4	82.99	48.52	46.62	53.87	58.37	34.97
Merged-chr12-69458556-3	chr12	69458060	69459060	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16990.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	89.81	83.86	56.42	105.93	86.77	76.36	106.67	111.43	53.71
Merged-chr14-61599543-3	chr14	61599036	61600036	+	954.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023233)	promoter-TSS (NM_023233)	24.0	NM_023233	66597.0	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	38.33	23.96	14.8	26.99	14.0	19.29	9.51	12.38	1.25
Merged-chr5-123135785-3	chr5	123135404	123136404	+	954.319458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3275.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	129.28	100.91	98.05	141.69	72.78	101.28	145.75	152.55	98.05
Merged-chr14-51163582-3	chr14	51163080	51164080	+	954.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019398)	TTS (NM_019398)	1320.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	14.3	23.5	18.5	9.45	13.06	18.49	24.29	40.24	39.35
Merged-chr1-36271740-3	chr1	36271323	36272323	+	954.301575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153408, intron 1 of 3)	intron (NM_153408, intron 1 of 3)	1602.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	140.15	156.67	134.12	118.75	96.57	121.37	164.76	208.26	118.66
Merged-chr5-125278572-3	chr5	125278044	125279044	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205082, intron 11 of 11)	intron (NM_001205082, intron 11 of 11)	62550.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	16.59	14.75	13.87	10.8	6.53	23.31	12.67	4.86	9.99
Merged-chr5-123399119-3	chr5	123398629	123399629	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	4331.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	45.19	51.61	67.52	26.31	26.12	32.15	46.47	53.94	29.98
Merged-chr2-165993787-3	chr2	165993275	165994275	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	1138.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	74.94	71.88	72.15	57.35	57.85	65.11	97.17	70.3	50.59
Merged-chrX-113172487-3	chrX	113171980	113172980	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018818, intron 1 of 14)	intron (NM_018818, intron 1 of 14)	13035.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	30.32	56.22	26.82	28.34	24.72	37.78	28.52	37.14	29.98
Merged-chr7-101093387-3	chr7	101092871	101093871	+	954.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15404.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	47.48	48.38	45.32	46.56	39.65	36.17	32.74	30.51	27.48
Merged-chr15-32920778-3	chr15	32920338	32921338	+	954.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008304, exon 1 of 5)	5' UTR (NM_008304, exon 1 of 5)	115.0	NM_008304	15529.0	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	17.73	5.53	6.47	7.42	8.86	17.68	13.73	7.52	7.49
Merged-chr9-70239367-2	chr9	70238868	70239868	+	954.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	32018.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	19.45	17.51	13.87	16.19	10.26	12.86	5.28	7.52	2.5
Merged-chr2-93456767-1	chr2	93456267	93457267	+	954.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040533)	TTS (NR_040533)	3948.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	13.16	7.37	4.62	24.96	8.86	4.82	12.67	1.33	2.5
Merged-chr10-15154969-1	chr10	15154469	15155469	+	954.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	394680.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	1.72	2.76	1.85	4.72	2.33	1.61	3.17	4.42	0.0
Merged-chr2-181459465-3	chr2	181458898	181459898	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	28.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	22.31	8.29	20.35	31.71	8.4	9.65	25.35	11.05	0.0
Merged-chr7-55957391-3	chr7	55956894	55957894	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	5099.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	104.69	127.64	114.69	110.65	95.17	94.04	177.44	233.02	89.93
Merged-chr16-92433732-3	chr16	92433235	92434235	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	32434.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	44.62	47.92	35.15	69.5	74.64	110.92	69.71	80.92	63.08
Merged-chr16-4625831-3	chr16	4625347	4626347	+	954.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025571)	promoter-TSS (NM_025571)	-901.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	84.09	127.64	82.32	99.86	88.17	116.55	138.36	164.49	82.44
Merged-chr1-136194562-3	chr1	136194069	136195069	+	954.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329610, intron 12 of 22)	L1MEf|LINE|L1	18259.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	5.72	7.37	3.7	4.72	5.13	6.43	7.39	3.1	6.25
Merged-chr6-108783714-3	chr6	108783201	108784201	+	954.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	CpG	642.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	248.27	260.8	196.09	250.32	250.52	186.48	213.35	248.06	135.52
Merged-chr8-45367306-3	chr8	45366807	45367807	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153535, intron 1 of 13)	intron (NM_153535, intron 1 of 13)	14984.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	10.3	3.23	1.85	2.7	0.93	3.22	0.0	1.77	2.5
Merged-chr4-70546381-3	chr4	70545883	70546883	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11455.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	8.58	6.91	9.25	6.75	4.67	9.65	8.45	4.42	11.24
Merged-chr18-77954598-1	chr18	77954098	77955098	+	954.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 4 of 43)	intron (NM_001195633, intron 4 of 43)	16131.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	2.86	6.45	1.85	8.77	3.73	7.23	22.18	7.96	6.25
Merged-chr16-18836677-3	chr16	18836190	18837190	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033164, intron 1 of 2)	CpG	110.0	NM_001033164	72307.0	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	21.74	9.22	12.02	26.31	23.33	16.08	20.07	12.82	5.0
Merged-chr19-31956571-3	chr19	31956062	31957062	+	954.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87801.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	4.58	5.07	3.7	2.02	1.4	6.43	4.22	2.65	3.75
Merged-chr17-72908983-2	chr17	72908487	72909487	+	954.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-9318.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.0	3.69	7.4	12.14	2.33	8.84	4.22	1.33	4.37
Merged-chr7-19157603-2	chr7	19157103	19158103	+	954.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080815, intron 13 of 13)	CpG	7765.0	NM_026943	107686.0	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	3.43	0.92	3.7	4.72	1.4	3.22	4.22	0.88	3.75
Merged-chr18-24178915-3	chr18	24178427	24179427	+	954.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-26417.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	6.29	3.23	7.4	8.77	6.06	1.61	3.17	2.65	6.25
Merged-chr5-135476419-3	chr5	135475935	135476935	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	68687.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	68.07	51.61	53.65	68.82	37.79	46.62	60.2	67.65	44.34
Merged-chr18-62191667-3	chr18	62191163	62192163	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11563.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	148.73	183.85	128.57	132.92	106.83	117.35	120.41	149.01	83.06
Merged-chr16-30521914-3	chr16	30521414	30522414	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357415, intron 10 of 11)	intron (NM_001357415, intron 10 of 11)	28664.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	12.01	7.83	11.1	18.22	11.2	7.23	3.17	2.65	7.49
Merged-chr6-39447976-3	chr6	39447463	39448463	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	27585.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	10.87	10.6	15.72	16.87	22.86	3.22	7.39	10.17	6.87
Merged-chr9-94708476-3	chr9	94707968	94708968	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	38576.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	16.59	11.52	19.42	20.24	7.46	10.45	10.56	5.75	8.12
Merged-chr1-179834236-3	chr1	179833736	179834736	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30221.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	25.74	12.9	11.1	18.89	8.86	1.61	12.67	11.94	7.49
Merged-chr9-7785763-3	chr9	7785259	7786259	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	1369.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	42.33	90.77	50.87	41.16	33.59	57.07	54.92	54.83	60.58
Merged-chr17-32993180-3	chr17	32992715	32993715	+	954.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045559)	promoter-TSS (NM_001045559)	76.0	NM_001045559	240067.0	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	62.35	67.74	44.4	53.98	60.18	86.81	111.96	94.18	69.95
Merged-chr15-96936971-3	chr15	96936492	96937492	+	954.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83367.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	9.15	1.84	1.85	2.7	6.06	1.61	5.28	6.63	6.25
Merged-chr8-120697844-3	chr8	120697337	120698337	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29517.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	22.88	19.35	17.57	28.34	11.66	39.39	19.01	15.92	13.74
Merged-chr4-134307727-3	chr4	134307230	134308230	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7390.0	NM_001039048	433766.0	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	9.15	5.07	3.7	2.7	1.87	1.61	8.45	0.88	2.5
Merged-chr14-63411668-3	chr14	63411113	63412113	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	5574.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	132.72	135.93	119.32	132.24	151.15	172.81	142.59	151.66	63.7
Merged-chr8-68880535-3	chr8	68880035	68881035	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008509)	promoter-TSS (NM_008509)	-20.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	48.05	41.93	18.5	54.65	40.12	45.82	52.81	72.96	29.98
Merged-chr10-51481652-3	chr10	51481177	51482177	+	954.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291893, exon 3 of 8)	exon (NM_001291893, exon 3 of 8)	1065.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	131.0	163.58	66.6	225.36	229.06	208.98	127.8	166.25	93.05
Merged-chr9-120493269-3	chr9	120492748	120493748	+	954.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026892, intron 1 of 3)	intron (NM_026892, intron 1 of 3)	642.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	151.02	152.52	90.65	169.35	224.86	183.26	133.08	130.44	69.95
Merged-chr10-37248751-1	chr10	37248251	37249251	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-109825.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	14.3	23.96	17.57	14.17	9.33	17.68	21.12	11.05	11.24
Merged-chr12-73681955-3	chr12	73681451	73682451	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	97155.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	135.58	123.03	76.77	190.27	138.09	103.69	134.14	140.61	78.69
Merged-chr9-123478642-5	chr9	123478201	123479201	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	0.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	77.8	88.47	62.9	54.65	67.64	65.11	92.94	82.69	89.31
Merged-chr2-103153472-3	chr2	103152965	103153965	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79790.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	8.01	5.53	9.25	7.42	3.27	1.61	5.28	1.77	6.25
Merged-chr1-72415794-3	chr1	72415311	72416311	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	108390.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	11.44	17.51	1.85	18.22	21.93	12.06	20.07	18.57	2.5
Merged-chr12-84969080-1	chr12	84968580	84969580	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178065, intron 1 of 19)	intron (NM_178065, intron 1 of 19)	1806.0	NM_178065	68497.0	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	25.74	27.19	24.97	20.92	13.06	14.47	27.46	29.63	24.36
Merged-chr14-54410625-2	chr14	54410127	54411127	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253679, intron 2 of 10)	intron (NM_001253679, intron 2 of 10)	-1155.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	116.7	105.98	89.72	135.62	88.64	131.02	148.92	141.05	85.56
Merged-chr4_JH584295_random-595-1	chr4_JH584295_random	95	1095	+	954.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	8.45	11.94	0.0
Merged-chr5-23751404-3	chr5	23750860	23751860	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178403, intron 9 of 15)	intron (NM_178403, intron 9 of 15)	28303.0	NM_001289781	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	6.29	5.53	3.7	21.59	13.53	29.74	10.56	3.98	5.0
Merged-chr15-73422786-3	chr15	73422283	73423283	+	954.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 1 of 34)	CpG	408.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	175.05	113.35	107.29	161.93	83.04	77.16	173.21	64.11	71.82
Merged-chr18-38247362-1	chr18	38246862	38247862	+	954.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	2836.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	8.58	10.14	12.95	16.87	20.99	16.88	20.07	19.01	15.61
Merged-chr2-135474368-3	chr2	135473871	135474871	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019677, exon 33 of 33)	3' UTR (NM_019677, exon 33 of 33)	108849.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	8.01	16.59	7.4	15.52	6.53	10.45	10.56	11.5	18.11
Merged-chr9-118638865-3	chr9	118638372	118639372	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	32163.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	56.06	27.19	20.35	36.43	21.46	32.15	40.14	35.37	24.36
Merged-chr17-64579998-3	chr17	64579507	64580507	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21642.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	13.16	15.21	9.25	7.42	10.73	8.84	10.56	6.19	18.11
Merged-chr6-91686115-3	chr6	91685624	91686624	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	2057.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	38.33	31.33	25.9	68.82	33.59	37.78	43.3	39.35	24.36
Merged-chr2-132112476-3	chr2	132111962	132112962	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	32646.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	66.93	52.07	63.82	64.1	27.52	47.42	68.65	38.03	28.73
Merged-chr6-34874673-3	chr6	34874180	34875180	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347101, exon 4 of 4)	exon (NM_001347101, exon 4 of 4)	3385.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	116.13	107.82	89.72	130.22	129.22	85.2	53.87	74.28	41.22
Merged-chr2-124298968-3	chr2	124298474	124299474	+	953.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 3 of 20)	intron (NM_001290997, intron 3 of 20)	-76616.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	13.73	5.99	0.0	4.72	5.13	0.0	6.34	2.65	3.12
Merged-chr2-58814658-3	chr2	58814171	58815171	+	953.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M8|LINE|L1	59487.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	28.03	26.26	27.75	60.72	38.25	49.83	39.08	29.18	18.74
Merged-chr7-35163823-3	chr7	35163331	35164331	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22554.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	6.29	2.3	7.4	4.72	0.93	2.41	5.28	4.86	3.75
Merged-chr2-84252275-3	chr2	84251773	84252773	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172993.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.86	8.29	5.55	15.52	4.2	6.43	10.56	9.29	6.25
Merged-chr17-43265394-3	chr17	43264909	43265909	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4938.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	6.29	1.84	0.92	6.75	2.33	0.0	2.11	2.21	1.25
Merged-chr6-123289909-3	chr6	123289418	123290418	+	953.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019948)	promoter-TSS (NM_019948)	-47.0	NM_019948	56619.0	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	5.72	7.37	6.47	8.77	5.13	9.65	10.56	4.42	3.75
Merged-chr4-128729916-3	chr4	128729421	128730421	+	953.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	2350.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	64.64	52.53	47.17	66.12	30.32	65.11	81.33	78.71	44.34
Merged-chr13-36132145-3	chr13	36131647	36132647	+	953.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 1 of 5)	intron (NM_001039189, intron 1 of 5)	14504.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	14.87	13.36	20.35	24.96	21.93	12.86	19.01	12.82	18.74
Merged-chr9-104629592-4	chr9	104629211	104630211	+	953.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	60228.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	78.94	91.7	27.75	101.88	94.7	102.88	34.85	27.86	31.23
Merged-chr3-87499095-6	chr3	87498592	87499592	+	953.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-26486.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	75.51	116.58	92.5	100.53	85.37	89.22	82.38	94.62	58.71
Merged-chr17-17871146-3	chr17	17870686	17871686	+	953.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	12753.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	145.87	180.63	99.89	130.22	96.1	187.28	152.09	205.17	141.14
Merged-chr8-6119676-2	chr8	6119172	6120172	+	953.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1014385.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	9.15	11.98	9.25	2.02	5.13	9.65	14.79	8.84	14.99
Merged-chr4-130793577-2	chr4	130793080	130794080	+	953.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	1043.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	124.71	109.21	94.35	149.11	145.08	165.58	245.04	209.59	108.67
Merged-chr1-166631929-2	chr1	166631455	166632455	+	953.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	15738.0	NM_001164312	226604.0	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	3.43	4.61	3.7	11.47	7.46	2.41	6.34	5.75	2.5
Merged-chr1-80613601-3	chr1	80613088	80614088	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 4 of 55)	intron (NM_175291, intron 4 of 55)	51764.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	57.21	105.06	70.3	86.36	48.05	70.73	88.72	84.45	61.2
Merged-chr8-111939995-3	chr8	111939497	111940497	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026693)	promoter-TSS (NM_026693)	-706.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	56.06	54.83	24.05	53.3	65.78	31.35	58.09	68.98	36.22
Merged-chr7-44858105-3	chr7	44857605	44858605	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290764, intron 2 of 16)	intron (NM_001290764, intron 2 of 16)	702.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	53.2	53.91	46.25	37.11	27.52	36.17	49.64	50.85	41.22
Merged-chr5-99571170-3	chr5	99570665	99571665	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	157895.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	16.59	12.9	6.47	37.78	17.26	8.04	26.4	11.05	10.62
Merged-chr8-107436358-3	chr8	107435857	107436857	+	953.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-41.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	181.34	192.61	146.14	201.74	258.91	155.13	254.54	255.57	122.41
Merged-chr8-107277653-2	chr8	107277160	107278160	+	953.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	-15810.0	NM_018823	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	3.43	6.91	5.55	2.02	4.67	3.22	8.45	6.19	6.87
Merged-chr5-36796113-3	chr5	36795614	36796614	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026242, intron 1 of 1)	CpG	640.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	180.77	195.83	181.29	181.5	199.2	218.63	195.39	182.17	144.89
Merged-chr11-114680467-3	chr11	114679977	114680977	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5009.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	209.37	154.82	112.84	268.54	232.32	197.73	235.53	264.86	94.93
Merged-chr15-86364042-3	chr15	86363506	86364506	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	86331.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	20.59	15.67	20.35	16.19	14.93	15.27	19.01	11.5	9.37
Merged-chr4-148498831-3	chr4	148498321	148499321	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039554, intron 1 of 4)	B2_Mm1t|SINE|B2	1641.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	45.19	43.31	29.6	58.7	47.58	54.66	27.46	22.11	24.36
Merged-chr7-81307747-3	chr7	81307241	81308241	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 9 of 21)	intron (NM_008803, intron 9 of 21)	37493.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	54.35	48.38	38.85	74.22	43.39	38.58	61.26	58.37	22.48
Merged-chr13-98693198-3	chr13	98692705	98693705	+	953.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025606, intron 1 of 3)	intron (NM_001025606, intron 1 of 3)	1626.0	NM_001025606	380863.0	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	143.01	143.76	93.42	182.17	173.54	125.39	202.79	239.21	69.32
Merged-chr2-113445657-2	chr2	113445157	113446157	+	953.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	4593.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	22.88	28.57	31.45	30.36	12.6	24.92	13.73	5.75	5.62
Merged-chr5-72208666-2	chr5	72208156	72209156	+	953.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	5313.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	29.17	29.95	18.5	22.94	32.19	25.72	32.74	52.62	26.23
Merged-chr1-161463925-2	chr1	161463435	161464435	+	953.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30722.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	10.87	10.14	7.4	20.24	17.26	25.72	4.22	9.29	6.25
Merged-chr1-136618783-2	chr1	136618296	136619296	+	953.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6105.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	13.73	10.6	3.7	14.17	5.6	20.9	4.22	6.19	12.49
Merged-chr19-43676040-3	chr19	43675546	43676546	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045645, exon 1 of 1)	non-coding (NR_045645, exon 1 of 1)	868.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	108.69	93.08	72.15	71.52	79.77	80.38	103.51	129.11	88.68
Merged-chr12-108613302-3	chr12	108612815	108613815	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	7549.0	NM_001163395	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.72	5.53	1.85	2.02	2.8	1.61	14.79	8.4	9.37
Merged-chr17-32534279-3	chr17	32533778	32534778	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2279.0	NM_001356302	70101.0	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	8.01	6.91	12.95	6.75	7.46	8.04	8.45	3.98	4.37
Merged-chr8-120709361-3	chr8	120708844	120709844	+	953.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27014.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	13.16	11.98	5.55	11.47	2.33	3.22	19.01	9.29	11.24
Merged-chr4-43547319-3	chr4	43546810	43547810	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 19 of 56)	intron (NM_011602, intron 19 of 56)	15273.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	16.02	9.22	6.47	9.45	7.93	13.66	2.11	5.75	19.98
Merged-chrX-155214749-4	chrX	155214182	155215182	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009121, intron 3 of 5)	intron (NM_009121, intron 3 of 5)	1767.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	124.14	148.37	49.02	134.27	111.5	88.42	163.71	230.37	76.19
Merged-chr7-4228484-3	chr7	4227967	4228967	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-9287.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	18.88	17.51	24.05	22.27	14.93	16.08	62.31	62.79	48.09
Merged-chr1-182512019-3	chr1	182511506	182512506	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	5604.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	4.58	5.53	3.7	10.8	6.53	12.86	5.28	4.42	7.49
Merged-chr13-20232292-3	chr13	20231781	20232781	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	141774.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	17.73	12.9	18.5	9.45	7.93	19.29	14.79	9.29	11.87
Merged-chr9-65844658-3	chr9	65844153	65845153	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357872, intron 12 of 13)	intron (NM_001357872, intron 12 of 13)	-17089.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	15.45	15.21	12.02	20.24	14.0	20.09	14.79	11.94	13.12
Merged-chr3-45254987-1	chr3	45254487	45255487	+	953.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	123273.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.57	2.3	0.0	1.35	5.13	3.22	6.34	2.21	4.37
Merged-chr7-31157148-3	chr7	31156647	31157647	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5211.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	26.89	27.19	48.1	37.11	22.86	18.49	38.02	23.43	19.36
Merged-chr17-32283509-3	chr17	32282988	32283988	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	635.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	196.21	187.54	134.12	169.35	121.76	128.61	194.34	152.55	127.4
Merged-chr1-190169434-1	chr1	190168934	190169934	+	953.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360827)	promoter-TSS (NM_001360827)	81.0	NM_001360827	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	2.86	2.3	8.32	3.37	5.6	6.43	7.39	2.21	2.5
Merged-chr3-40523490-3	chr3	40522982	40523982	+	953.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-570.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	17.16	11.98	14.8	17.54	22.39	8.04	34.85	33.16	15.61
Merged-chr4-133586736-2	chr4	133586251	133587251	+	953.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290742, intron 2 of 4)	intron (NM_001290742, intron 2 of 4)	2378.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	27.46	18.89	12.95	23.62	19.13	19.29	6.34	2.21	7.49
Merged-chr10-91141734-3	chr10	91141232	91142232	+	953.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17769.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	29.75	20.27	7.4	24.96	22.39	27.33	19.01	15.48	18.74
Merged-chr12-69538707-3	chr12	69538204	69539204	+	953.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44324.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	61.21	45.62	26.82	109.3	69.51	65.11	76.05	57.48	31.85
Merged-chr10-3832149-3	chr10	3831650	3832650	+	953.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-40517.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	13.73	10.14	9.25	8.1	8.4	8.04	21.12	18.13	11.87
Merged-chr5-108031504-2	chr5	108030988	108031988	+	953.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34186.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	10.3	6.91	5.55	9.45	8.86	20.9	21.12	16.36	6.87
Merged-chr2-167744143-3	chr2	167743650	167744650	+	953.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52973.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	34.32	12.9	12.95	29.01	11.2	13.66	28.52	14.59	8.74
Merged-chr7-145098591-3	chr7	145098067	145099067	+	953.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109552.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	10.3	7.83	0.0	8.77	1.87	1.61	5.28	3.98	1.87
Merged-chr11-115700417-3	chr11	115699927	115700927	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313937)	promoter-TSS (NM_001313937)	-499.0	NM_001313936	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	145.3	170.49	146.14	178.13	119.89	111.73	167.93	236.12	103.67
Merged-chr2-150609384-3	chr2	150608903	150609903	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027977)	promoter-TSS (NM_027977)	-836.0	NM_001356492	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	19.45	23.96	17.57	18.89	14.93	20.9	16.9	28.74	17.49
Merged-chr13-55125107-3	chr13	55124623	55125623	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012017, intron 5 of 6)	intron (NM_012017, intron 5 of 6)	19814.0	NM_012017	26919.0	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	11.44	9.68	7.4	13.49	4.2	14.47	9.51	7.52	12.49
Merged-chr2-165286578-3	chr2	165286071	165287071	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1216.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	116.7	89.39	68.45	105.93	94.23	68.32	78.16	86.66	44.34
Merged-chr1-66649815-3	chr1	66649316	66650316	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-51015.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	13.73	14.28	12.95	6.75	10.73	11.25	2.11	9.29	6.87
Merged-chr5-21735781-3	chr5	21735294	21736294	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1366.0	NM_028431	73078.0	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	1.72	5.99	0.0	16.19	13.53	11.25	15.84	26.97	14.36
Merged-chr10-63338543-3	chr10	63338051	63339051	+	953.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019812, intron 1 of 8)	CpG	484.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	70.93	50.23	48.1	78.27	44.78	97.26	98.23	58.37	46.22
Merged-chr3-135686703-3	chr3	135686207	135687207	+	953.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	4840.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	58.92	60.36	47.17	34.41	36.39	56.27	39.08	55.27	54.96
Merged-chr10-39266747-3	chr10	39266237	39267237	+	953.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102943.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	39.47	46.08	21.27	42.51	48.98	48.23	30.63	6.63	16.86
Merged-chr11-105901721-2	chr11	105901208	105902208	+	953.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181071, intron 17 of 25)	intron (NM_181071, intron 17 of 25)	42779.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	20.59	24.88	4.62	65.45	55.51	16.88	9.51	10.61	3.75
Merged-chr12-99464483-3	chr12	99463989	99464989	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14415.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	24.03	30.87	14.8	18.89	17.73	4.82	40.14	27.86	11.24
Merged-chr17-33815600-1	chr17	33815100	33816100	+	953.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030697, intron 1 of 10)	B2_Mm1a|SINE|B2	5077.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	14.3	8.75	6.47	52.63	40.12	43.4	9.51	10.61	6.87
Merged-chr1-105747369-3	chr1	105746815	105747815	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-33408.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	65.21	73.26	40.7	55.33	61.58	60.28	69.71	65.44	57.46
Merged-chr5-3369533-3	chr5	3369042	3370042	+	953.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	25649.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	29.17	49.3	30.52	47.9	46.18	53.85	53.87	64.56	51.21
Merged-chr7-31181387-2	chr7	31180899	31181899	+	953.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	19041.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	10.3	12.9	7.4	14.17	11.66	17.68	20.07	11.94	14.36
Merged-chr12-69364259-3	chr12	69363772	69364772	+	953.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7096.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	76.08	72.34	64.75	78.94	58.78	86.01	69.71	81.36	64.33
Merged-chr4-53437537-3	chr4	53437028	53438028	+	953.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2885.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	16.59	11.98	4.62	21.59	15.39	9.65	11.62	3.98	2.5
Merged-chr2-165408000-3	chr2	165407491	165408491	+	953.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 12 of 12)	intron (NM_054055, intron 12 of 12)	-7597.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	20.02	17.97	25.9	16.87	14.46	15.27	11.62	11.94	8.74
Merged-chr15-68361260-3	chr15	68360752	68361752	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19963.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	114.98	120.73	64.75	107.95	59.71	42.6	173.21	179.08	75.57
Merged-chr17-24851605-3	chr17	24851101	24852101	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159626, intron 1 of 8)	intron (NM_001159626, intron 1 of 8)	934.0	NM_001159626	14651.0	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	110.41	120.73	98.05	116.73	112.43	92.44	66.54	90.2	50.59
Merged-chr7-138846715-3	chr7	138846229	138847229	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027115)	promoter-TSS (NM_027115)	343.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	235.11	168.65	155.39	205.79	112.9	83.59	203.84	101.26	75.57
Merged-chr11-106076495-3	chr11	106076002	106077002	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8400.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	14.3	10.14	7.4	10.12	6.53	10.45	20.07	14.15	12.49
Merged-chr17-27005834-3	chr17	27005320	27006320	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12215.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	61.21	59.44	44.4	65.45	48.98	61.89	62.31	57.04	33.1
Merged-chr4-55817252-3	chr4	55816761	55817761	+	953.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-284786.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	26.31	16.13	8.32	10.12	7.0	5.63	9.51	8.4	6.25
Merged-chr5-141013552-3	chr5	141013046	141014046	+	953.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12950.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	51.48	56.22	47.17	50.6	43.39	71.54	51.75	53.94	54.96
Merged-chr6-82048165-2	chr6	82047683	82048683	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	6555.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	27.46	12.44	26.82	45.21	33.12	16.08	1.06	0.88	3.75
Merged-chr11-3171442-2	chr11	3170942	3171942	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mur1|SINE|Alu	22021.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	68.07	84.32	104.52	74.89	102.17	100.47	2.11	1.77	148.01
Merged-chr6-28292882-3	chr6	28292374	28293374	+	953.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31273.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	45.76	58.06	51.8	34.41	31.72	35.37	77.1	58.37	47.46
Merged-chr1-192090030-3	chr1	192089596	192090596	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	2503.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	36.04	50.23	46.25	18.22	15.39	24.92	36.97	32.28	27.48
Merged-chr11-100725626-3	chr11	100725095	100726095	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	MIR3|SINE|MIR	11745.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	137.86	144.69	83.25	113.35	88.64	87.61	128.85	141.05	93.05
Merged-chr19-47281072-3	chr19	47280586	47281586	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164717, intron 9 of 13)	intron (NM_001164717, intron 9 of 13)	-7497.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	10.87	6.91	20.35	13.49	10.73	6.43	12.67	5.31	9.37
Merged-chr10-127420795-3	chr10	127420308	127421308	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168293)	promoter-TSS (NM_001168293)	-59.0	NM_027900	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	143.59	103.22	37.92	103.91	60.65	61.09	96.11	86.66	61.2
Merged-chr10-41968360-3	chr10	41967860	41968860	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	50022.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	25.74	28.11	38.85	26.99	20.53	38.58	20.07	28.74	27.48
Merged-chr11-95258686-3	chr11	95258195	95259195	+	953.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2834.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	22.88	15.21	7.4	36.43	34.52	48.23	32.74	22.55	9.99
Merged-chr5-150593867-4	chr5	150593381	150594381	+	953.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	CpG	644.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	339.8	290.29	407.9	267.86	243.52	233.1	342.2	276.8	216.71
Merged-chr17-30506991-3	chr17	30506509	30507509	+	953.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	69278.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	55.49	85.25	65.67	18.22	14.0	25.72	22.18	25.2	10.62
Merged-chr9-110529184-3	chr9	110528679	110529679	+	953.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3418.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	25.74	37.78	31.45	27.66	21.93	30.54	44.36	57.04	44.34
Merged-chr5-64676420-3	chr5	64675910	64676910	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65711.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	151.59	116.12	76.77	105.26	65.31	98.87	115.12	99.93	68.7
Merged-chr15-73644112-3	chr15	73643619	73644619	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19375.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	65.79	78.79	67.52	57.35	53.18	45.82	69.71	73.84	42.47
Merged-chr15-66950343-3	chr15	66949848	66950848	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008681, intron 3 of 15)	intron (NM_008681, intron 3 of 15)	19293.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	9.72	5.53	9.25	2.7	6.53	11.25	13.73	1.77	2.5
Merged-chr4-20033096-3	chr4	20032591	20033591	+	953.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8961.0	NM_010281	14590.0	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	25.74	23.5	12.95	18.89	20.06	14.47	29.57	18.13	13.74
Merged-chr8-125224628-3	chr8	125224134	125225134	+	953.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	170439.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	9.15	11.52	6.47	18.89	13.53	17.68	32.74	24.76	17.49
Merged-chr13-21832146-3	chr13	21831627	21832627	+	953.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175657).2	promoter-TSS (NM_175657).2	31.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	17.73	7.83	0.0	15.52	4.67	1.61	9.51	4.42	7.49
Merged-chr6-87537075-3	chr6	87536576	87537576	+	953.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3817.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	75.51	52.53	70.3	68.82	28.46	60.28	51.75	37.58	41.22
Merged-chr3-9886827-3	chr3	9886329	9887329	+	953.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-53150.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	17.73	10.6	18.5	23.62	13.53	28.13	48.58	52.18	49.96
Merged-chr1-33503044-3	chr1	33502557	33503557	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	166737.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	26.89	45.16	27.75	25.64	31.26	40.19	22.18	36.7	43.72
Merged-chr6-13603333-3	chr6	13602805	13603805	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028990, exon 2 of 5)	exon (NM_028990, exon 2 of 5)	4793.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	19.45	37.32	3.7	10.8	9.8	16.08	8.45	11.94	6.87
Merged-chr13-45974009-3	chr13	45973523	45974523	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9032.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	64.64	59.9	59.2	38.46	77.44	65.11	54.92	66.33	39.35
Merged-chr17-81432914-3	chr17	81432406	81433406	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 5 of 8)	intron (NR_104580, intron 5 of 8)	305481.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	22.88	15.67	11.1	22.27	8.86	6.43	14.79	16.36	9.99
Merged-chr10-91300311-3	chr10	91299798	91300798	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	-79679.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	4.58	12.9	9.25	15.52	9.33	26.53	7.39	16.8	19.36
Merged-chr17-56612136-3	chr17	56611638	56612638	+	953.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	18.31	24.88	37.0	18.22	26.12	20.09	34.85	27.86	34.97
Merged-chr16-36590109-2	chr16	36589603	36590603	+	953.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-27969.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	5.15	4.15	3.7	7.42	5.13	4.82	6.34	4.86	2.5
Merged-chr11-100719425-3	chr11	100718926	100719926	+	953.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 2 of 5)	intron (NM_001305003, intron 2 of 5)	5576.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	19.45	31.79	27.75	30.36	21.93	38.58	40.14	35.37	33.72
Merged-chr10-128526741-3	chr10	128526230	128527230	+	953.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011843)	promoter-TSS (NM_011843)	-871.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	204.8	168.65	168.34	213.89	167.48	143.88	223.91	253.8	126.15
Merged-chr8-80240080-2	chr8	80239578	80240578	+	953.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182070.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	2.86	7.83	9.25	5.4	5.6	9.65	4.22	4.86	11.24
Merged-chr11-100395446-3	chr11	100394923	100395923	+	953.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	2367.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	52.06	44.24	28.67	62.07	41.52	29.74	60.2	32.72	24.36
Merged-chr12-113146285-3	chr12	113145789	113146789	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347443)	TTS (NM_001347443)	5684.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	42.9	21.66	22.2	74.89	38.72	41.8	10.56	3.98	6.25
Merged-chr5-43879972-3	chr5	43879451	43880451	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	11142.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	141.3	142.84	126.72	184.87	129.69	171.21	166.88	206.93	122.41
Merged-chr17-31088925-3	chr17	31088459	31089459	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	31265.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	24.6	18.43	38.85	34.41	36.85	53.05	28.52	22.11	22.48
Merged-chr2-156181533-3	chr2	156181028	156182028	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-1290.0	NM_133242	170791.0	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	88.1	68.66	48.1	130.9	101.23	98.87	81.33	85.78	38.1
Merged-chr9-66213770-3	chr9	66213266	66214266	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	55540.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	14.87	8.29	3.7	11.47	7.93	11.25	16.9	6.19	3.75
Merged-chr13-100683042-3	chr13	100682541	100683541	+	953.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183115, intron 5 of 11)	intron (NM_183115, intron 5 of 11)	13560.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	18.31	22.58	9.25	40.48	32.19	51.44	67.6	62.79	43.09
Merged-chr11-114877192-3	chr11	114876694	114877694	+	953.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12847.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	18.31	18.43	25.9	28.34	17.73	24.92	25.35	19.9	19.98
Merged-chr11-69325814-2	chr11	69325318	69326318	+	953.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010599)	promoter-TSS (NM_010599)	-440.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	206.51	234.08	141.52	190.27	166.08	158.35	214.41	278.12	138.65
Merged-chr2-27373636-3	chr2	27373146	27374146	+	953.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	MTC|LTR|ERVL-MaLR	53962.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	81.23	59.44	43.47	89.74	64.84	73.14	65.48	54.39	28.1
Merged-chr5-107866590-3	chr5	107866102	107867102	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	HAL1|LINE|L1	8505.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	21.17	21.66	17.57	30.36	17.73	16.88	26.4	12.38	19.36
Merged-chr15-58687927-3	chr15	58687446	58688446	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135481.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	28.6	26.26	24.05	25.64	19.59	27.33	21.12	22.11	14.99
Merged-chr9-111056110-3	chr9	111055635	111056635	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001302376, exon 3 of 3)	exon (NM_001302376, exon 3 of 3)	1109.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	111.55	68.2	36.07	97.83	56.45	42.6	59.15	34.49	16.24
Merged-chr19-58978944-3	chr19	58978464	58979464	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-35292.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	26.89	30.41	13.87	57.35	52.25	30.54	25.35	35.37	17.49
Merged-chr1-36927782-3	chr1	36927270	36928270	+	953.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	11757.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	33.18	37.78	28.67	26.99	23.33	16.88	24.29	27.41	20.61
Merged-chr7-43564780-3	chr7	43564263	43565263	+	953.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001008549, exon 2 of 5)	5' UTR (NM_001008549, exon 2 of 5)	2393.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	30.89	20.74	18.5	19.57	16.79	13.66	22.18	19.46	9.99
Merged-chr7-89081498-1	chr7	89080998	89081998	+	953.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	257289.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	10.3	3.69	0.0	1.35	2.8	1.61	0.0	1.33	4.37
Merged-chr13-23717700-3	chr13	23717212	23718212	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-6858.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	158.46	120.73	91.57	149.11	97.5	92.44	149.98	152.99	92.43
Merged-chr15-53563100-3	chr15	53562575	53563575	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	51204.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	21.17	10.6	20.35	15.52	10.26	23.31	15.84	9.29	12.49
Merged-chr7-68756988-3	chr7	68756492	68757492	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7754.0	NM_025549	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	19.45	11.98	9.25	10.8	10.26	12.86	19.01	15.03	14.99
Merged-chr16-30252265-3	chr16	30251765	30252765	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15267.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	5.72	3.23	4.62	3.37	2.8	1.61	1.06	4.86	3.75
Merged-chr1-131501811-2	chr1	131501318	131502318	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	25543.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	37.76	50.23	61.05	33.06	32.66	29.74	47.53	31.84	26.23
Merged-chr13-85596822-1	chr13	85596322	85597322	+	953.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-307336.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.0	5.99	3.7	4.72	4.67	0.0	6.34	2.21	9.99
Merged-chr8-75103112-1	chr8	75102612	75103612	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-6397.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	6.86	12.44	11.1	10.12	13.53	22.51	5.28	7.52	12.49
Merged-chr10-81136992-3	chr10	81136510	81137510	+	953.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	CpG	739.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	274.59	269.1	230.31	216.58	187.07	249.98	196.45	214.89	193.6
Merged-chr2-31119219-3	chr2	31118738	31119738	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-22738.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	34.32	24.42	29.6	35.76	25.19	23.31	20.07	21.67	20.61
Merged-chr7-16175328-3	chr7	16174812	16175812	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302472)	promoter-TSS (NM_001302472)	-83.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	46.91	50.23	52.72	47.9	48.98	41.8	87.66	52.62	32.48
Merged-chr9-40501655-3	chr9	40501165	40502165	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	29718.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	12.01	12.9	14.8	12.82	4.67	11.25	2.11	4.86	6.25
Merged-chr18-39635833-3	chr18	39635325	39636325	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137672.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	127.0	97.23	99.89	132.92	97.97	151.92	167.93	136.19	98.68
Merged-chr1-171915808-3	chr1	171915308	171916308	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151536, intron 1 of 2)	RMER15-int|LTR|ERVL	-1654.0	NM_030710	30925.0	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	27.46	18.43	2.77	18.89	15.39	16.88	31.69	25.65	14.36
Merged-chr14-30190590-3	chr14	30190081	30191081	+	952.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	L1VL4|LINE|L1	162905.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	84.09	104.14	78.62	91.76	96.1	94.04	103.51	106.56	61.83
Merged-chr8-120818249-3	chr8	120817757	120818757	+	952.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79618.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	22.31	17.51	13.87	39.81	33.12	37.78	15.84	18.57	13.74
Merged-chr15-5496145-3	chr15	5495643	5496643	+	952.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045274)	promoter-TSS (NR_045274)	-175.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	42.9	65.89	55.5	56.68	54.11	80.38	53.87	62.35	33.72
Merged-chr19-11818217-6	chr19	11817635	11818635	+	952.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	1268.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	227.11	245.14	149.84	282.03	312.56	195.32	247.15	262.21	93.68
Merged-chr1-123606260-2	chr1	123605768	123606768	+	952.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	439291.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	15.45	7.83	11.1	8.1	6.06	4.02	5.28	1.77	7.49
Merged-chr4-156087579-3	chr4	156087074	156088074	+	952.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22424.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	6.86	10.6	7.4	14.84	4.67	4.82	13.73	6.63	7.49
Merged-chr5-81076577-3	chr5	81076092	81077092	+	952.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	54999.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.29	4.15	2.77	6.07	1.4	1.61	5.28	3.98	3.75
Merged-chr1-45858218-3	chr1	45857708	45858708	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63042.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	69.79	76.49	51.8	76.24	76.04	64.3	60.2	81.36	43.72
Merged-chr5-139197183-3	chr5	139196673	139197673	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3464.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	70.36	57.6	69.37	82.32	58.78	106.9	89.78	79.15	49.96
Merged-chr6-47621209-3	chr6	47620718	47621718	+	952.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26188.0	NM_007971	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	6.86	13.82	3.7	9.45	6.53	9.65	8.45	9.29	6.25
Merged-chr2-35209620-5	chr2	35209136	35210136	+	952.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8516.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	95.53	70.96	76.77	71.52	46.18	60.28	52.81	48.64	31.23
Merged-chr15-59845379-4	chr15	59844890	59845890	+	952.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50431.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.58	3.69	7.4	20.24	20.53	16.88	4.22	7.52	7.49
Merged-chr12-32339966-2	chr12	32339477	32340477	+	952.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-38812.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	13.16	16.59	24.05	16.87	8.4	9.65	23.24	19.46	24.98
Merged-chr17-43069041-1	chr17	43068541	43069541	+	952.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	52486.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	22.88	21.66	25.9	29.69	26.12	23.31	3.17	2.65	1.25
Merged-chr1-120076495-3	chr1	120075994	120076994	+	952.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-2714.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	60.64	65.43	60.12	51.95	58.78	76.36	80.27	53.94	41.22
Merged-chr7-17059014-1	chr7	17058514	17059514	+	952.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	MIR|SINE|MIR	-2335.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	28.03	35.48	41.62	22.27	26.59	42.6	47.53	49.08	51.84
Merged-chr4-8913310-3	chr4	8912801	8913801	+	952.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161977.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	175.05	183.39	165.57	134.94	135.75	135.84	228.14	244.08	183.61
Merged-chr10-84388838-2	chr10	84388339	84389339	+	952.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	51632.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	57.78	54.37	50.87	64.1	48.05	43.4	63.37	40.68	35.6
Merged-chr10-37364691-3	chr10	37364185	37365185	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-225759.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	16.02	12.9	14.8	22.27	13.06	11.25	21.12	9.73	17.49
Merged-chr13-30725104-3	chr13	30724623	30725623	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24110.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	17.73	13.82	13.87	18.22	16.33	10.45	8.45	10.17	12.49
Merged-chr10-122800515-3	chr10	122800007	122801007	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	121192.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	38.9	19.81	16.65	50.6	54.58	28.13	67.6	53.06	25.61
Merged-chr11-58092740-3	chr11	58092233	58093233	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11237.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	52.06	68.2	44.4	49.93	53.18	55.46	14.79	34.49	11.24
Merged-chr12-32306564-3	chr12	32306022	32307022	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-72267.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	57.21	79.72	60.12	57.35	78.84	105.3	132.02	140.17	83.69
Merged-chr4-46451558-3	chr4	46451064	46452064	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	CpG	638.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	117.84	124.87	170.19	119.43	116.63	147.9	143.64	105.68	81.81
Merged-chr2-11438438-3	chr2	11437936	11438936	+	952.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39936.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	17.73	17.05	9.25	31.04	26.59	16.08	23.24	11.5	8.74
Merged-chr6-115809079-3	chr6	115808569	115809569	+	952.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172086)	promoter-TSS (NM_172086)	-326.0	NM_172086	19951.0	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	149.31	129.02	90.65	142.37	144.62	92.44	130.97	121.15	44.34
Merged-chr3-55293567-2	chr3	55293079	55294079	+	952.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	51215.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.58	8.29	5.55	5.4	8.4	11.25	7.39	6.63	1.25
Merged-chr13-60722895-3	chr13	60722392	60723392	+	952.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 10 of 26)	intron (NM_134062, intron 10 of 26)	63472.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	86.38	82.94	60.12	122.12	62.51	103.69	77.1	60.13	49.96
Merged-chr17-8163579-2	chr17	8163092	8164092	+	952.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	44.62	45.62	37.0	33.74	15.39	29.74	16.9	18.13	23.73
Merged-chr9-107575092-1	chr9	107574592	107575592	+	952.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1835.0	NM_008317	15586.0	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	14.3	11.52	25.9	19.57	16.79	12.06	30.63	41.12	19.36
Merged-chr1-184542500-3	chr1	184541993	184542993	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	intron (NR_040472, intron 2 of 5)	15198.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	16.59	14.75	0.0	22.94	16.79	22.51	9.51	17.24	6.25
Merged-chr5-118465133-3	chr5	118464628	118465628	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95591.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	25.74	11.06	4.62	32.39	8.4	16.08	14.79	3.54	11.24
Merged-chr14-52119370-3	chr14	52118832	52119832	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023879, exon 4 of 25)	exon (NM_023879, exon 4 of 25)	8429.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	22.88	22.58	14.8	24.29	21.93	15.27	98.23	115.41	86.81
Merged-chr18-39519950-3	chr18	39519448	39520448	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32703.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	50.91	63.13	63.82	49.93	48.52	40.19	81.33	90.64	48.71
Merged-chr3-18641886-3	chr3	18641395	18642395	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-161418.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	1.14	2.76	7.4	6.75	12.13	19.29	9.51	8.4	14.36
Merged-chr12-91008389-3	chr12	91007886	91008886	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 25 of 25)	intron (NM_181815, intron 25 of 25)	-37462.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	11.44	12.44	5.55	11.47	27.06	20.9	6.34	8.4	9.37
Merged-chr15-97774410-1	chr15	97773910	97774910	+	952.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6744.0	NM_001357630	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	13.16	4.61	20.35	16.87	7.0	18.49	8.45	3.54	6.25
Merged-chr2-31715897-3	chr2	31715368	31716368	+	952.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	27331.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	68.07	55.75	39.77	53.98	36.39	35.37	41.19	49.96	14.99
Merged-chr11-4989364-2	chr11	4988864	4989864	+	952.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	2540.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	18.88	22.12	16.65	24.29	17.73	18.49	16.9	7.52	10.62
Merged-chr10-67031397-2	chr10	67030900	67031900	+	952.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110511, intron 3 of 6)	intron (NR_110511, intron 3 of 6)	26325.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	24.6	15.67	12.95	37.78	16.33	9.65	22.18	16.8	7.49
Merged-chr4-40773321-3	chr4	40772820	40773820	+	952.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15435.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	10.3	3.23	11.1	10.12	2.8	12.86	11.62	8.84	7.49
Merged-chr16-55734503-3	chr16	55734007	55735007	+	952.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87631.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	54.92	34.1	12.95	83.66	80.71	40.19	41.19	29.63	18.74
Merged-chr15-101248127-3	chr15	101247634	101248634	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18712.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	43.48	33.18	20.35	41.16	31.72	28.94	60.2	53.94	41.22
Merged-chr8-46745689-3	chr8	46745198	46746198	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	5953.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	33.75	17.05	22.2	26.99	14.93	32.96	34.85	20.34	18.11
Merged-chr11-59540307-3	chr11	59539797	59540797	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1272.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	74.37	68.66	61.97	107.95	73.71	86.01	76.05	81.36	62.45
Merged-chrX-9489564-3	chrX	9489086	9490086	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20262.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	13.16	29.03	24.05	22.27	20.99	20.9	21.12	17.69	18.74
Merged-chr15-77840680-3	chr15	77840172	77841172	+	952.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	U6|snRNA|snRNA	1503.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	166.47	168.19	129.49	103.23	107.3	82.79	149.98	163.6	157.38
Merged-chr8-94745540-3	chr8	94745039	94746039	+	952.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009137)	promoter-TSS (NM_009137)	-145.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	17.73	9.22	3.7	3.37	1.87	1.61	11.62	4.42	7.49
Merged-chr3-121723284-4	chr3	121722722	121723722	+	952.53125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010171)	promoter-TSS (NM_010171)	-315.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	22.31	23.04	12.02	16.19	13.53	3.22	64.43	49.08	18.74
Merged-chr15-75887684-3	chr15	75887191	75888191	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 3 of 13)	intron (NM_001282443, intron 3 of 13)	1032.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	28.6	23.5	18.5	28.34	33.12	26.53	30.63	14.15	7.49
Merged-chr2-57116129-2	chr2	57115630	57116630	+	952.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-1092.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	15.45	10.6	9.25	44.53	12.6	26.53	33.8	14.15	8.74
Merged-chr13-37346032-3	chr13	37345498	37346498	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	653.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	430.76	457.1	277.49	357.6	321.89	245.96	392.9	479.31	201.72
Merged-chr6-117817181-3	chr6	117816693	117817693	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23988.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	38.33	40.55	7.4	50.6	48.98	68.32	26.4	26.53	13.74
Merged-chr5-48331621-1	chr5	48331121	48332121	+	952.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40771.0	NM_025755	66768.0	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	1.72	5.07	1.85	5.4	4.67	3.22	6.34	4.42	2.5
Merged-chr8-45410305-3	chr8	45409783	45410783	+	952.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357316)	promoter-TSS (NM_001357316)	97.0	NM_001357316	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	86.95	120.73	95.27	70.85	75.11	70.73	89.78	111.43	73.69
Merged-chr2-152709259-3	chr2	152708774	152709774	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159551)	TTS (NM_001159551)	22126.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	7.44	12.9	17.57	31.71	12.6	21.7	15.84	10.61	10.62
Merged-chr1-184851978-3	chr1	184851465	184852465	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6118.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	95.53	74.65	98.05	109.98	73.24	90.02	97.17	68.98	59.95
Merged-chr2-59397698-3	chr2	59397210	59398210	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-11028.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	16.02	17.51	16.65	14.84	16.33	32.15	19.01	11.05	7.49
Merged-chr3-27237424-3	chr3	27236892	27237892	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	54388.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	63.5	57.14	43.47	71.52	64.84	57.07	52.81	104.79	46.84
Merged-chr11-29428991-3	chr11	29428502	29429502	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176841, intron 5 of 31)	MIRb|SINE|MIR	54830.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	27.46	49.76	16.65	33.74	34.99	31.35	26.4	25.65	31.85
Merged-chr8-68212233-3	chr8	68211742	68212742	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64286.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	34.32	55.29	22.2	54.65	52.72	44.21	72.88	54.83	47.46
Merged-chr19-32779335-3	chr19	32778822	32779822	+	952.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	21745.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	33.18	47.46	46.25	39.81	43.39	50.64	47.53	49.52	38.1
Merged-chr2-128337606-5	chr2	128337139	128338139	+	952.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	91712.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	66.93	52.99	52.72	106.61	85.84	110.92	92.94	102.14	58.71
Merged-chr2-28796512-2	chr2	28796018	28797018	+	952.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 11 of 12)	intron (NM_001033874, intron 11 of 12)	43842.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	1.14	1.84	11.1	2.02	0.0	9.65	1.06	1.33	2.5
Merged-chr17-70829813-2	chr17	70829318	70830318	+	952.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	16959.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	119.56	113.35	78.62	122.12	78.84	112.53	86.61	114.08	69.32
Merged-chr10-8883932-3	chr10	8883405	8884405	+	952.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	2165.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	175.62	219.79	135.97	203.09	160.48	147.9	171.1	170.23	84.94
Merged-chr4-66843471-3	chr4	66842982	66843982	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	15931.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	47.48	49.76	50.87	68.15	51.32	65.11	27.46	25.65	11.87
Merged-chr2-145740211-3	chr2	145739719	145740719	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	39024.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	161.89	149.29	86.02	203.09	193.13	216.22	174.27	149.01	84.31
Merged-chr4-32570966-5	chr4	32570466	32571466	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_026843, intron 1 of 4)	intron (NR_026843, intron 1 of 4)	696.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	375.84	425.3	264.54	401.46	490.77	391.44	368.61	433.32	186.73
Merged-chr12-35641135-3	chr12	35640625	35641625	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	45179.0	NR_045051	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	6.86	6.91	1.85	5.4	11.66	4.82	12.67	4.86	6.25
Merged-chr13-113013445-3	chr13	113012906	113013906	+	952.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19538.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	26.31	34.56	24.05	60.72	74.17	54.66	86.61	141.49	52.46
Merged-chr3-51518610-3	chr3	51518116	51519116	+	952.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_080793, exon 8 of 8)	3' UTR (NM_080793, exon 8 of 8)	34650.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	9.15	7.83	18.5	10.8	11.2	16.08	8.45	13.27	9.37
Merged-chr1-34828106-3	chr1	34827623	34828623	+	952.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	14927.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	41.76	40.09	46.25	90.41	103.1	80.38	83.44	76.05	46.84
Merged-chr15-96552173-2	chr15	96551673	96552673	+	952.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89789.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	2.29	4.61	1.85	2.02	5.13	1.61	2.11	0.44	2.5
Merged-chr4-149701585-3	chr4	149701073	149702073	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	56.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	134.43	126.72	72.15	116.05	73.71	92.44	193.28	172.89	73.69
Merged-chr9-89197646-3	chr9	89197158	89198158	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-1615.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	28.03	42.85	28.67	37.78	26.59	17.68	34.85	33.6	18.74
Merged-chr8-117453744-3	chr8	117453238	117454238	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106045)	TTS (NR_106045)	715.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	69.79	52.07	37.92	72.87	62.98	42.6	91.89	80.47	45.59
Merged-chr12-99511921-3	chr12	99511439	99512439	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-51902.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	16.59	9.22	10.17	10.12	6.53	11.25	20.07	13.27	5.0
Merged-chr6-124737197-3	chr6	124736700	124737700	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 1 of 15)	MIRb|SINE|MIR	1509.0	NM_001077705	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	126.42	85.71	106.37	43.86	33.12	36.97	157.37	198.98	101.8
Merged-chr8-122550343-3	chr8	122549844	122550844	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	985.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	34.9	24.42	14.8	37.11	22.86	20.09	31.69	25.2	11.87
Merged-chr8-70158715-3	chr8	70158201	70159201	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045484, intron 1 of 8)	CpG	5940.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	13.16	13.36	1.85	10.8	7.46	6.43	6.34	5.31	2.5
Merged-chr18-50045018-1	chr18	50044518	50045518	+	952.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155293, intron 2 of 3)	MER119|DNA|hAT-Charlie	-8264.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	6.29	5.07	7.4	6.75	5.6	1.61	3.17	4.42	3.75
Merged-chr6-72261474-3	chr6	72260974	72261974	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25897.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	2.29	0.46	3.7	4.05	3.73	4.02	3.17	0.0	3.75
Merged-chr5-32744772-3	chr5	32744280	32745280	+	952.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347332, intron 2 of 8)	intron (NM_001347332, intron 2 of 8)	1562.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	70.36	60.82	68.45	80.97	46.18	59.48	68.65	54.83	48.71
Merged-chr11-116019086-4	chr11	116018637	116019637	+	952.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5367.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	28.03	5.53	3.7	12.82	2.8	7.23	4.22	3.98	3.75
Merged-chr15-101978665-3	chr15	101978184	101979184	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24397.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	141.87	156.21	120.24	137.64	128.76	161.56	144.7	183.06	118.04
Merged-chr15-78579657-3	chr15	78579166	78580166	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1923.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	24.6	33.18	32.37	20.92	13.53	36.97	22.18	10.61	24.98
Merged-chr10-88372665-3	chr10	88372180	88373180	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6732.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	30.89	16.59	14.8	8.77	7.93	11.25	14.79	14.59	5.62
Merged-chr6-30229144-3	chr6	30228648	30229648	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14655.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	6.86	6.45	3.7	7.42	8.86	4.82	7.39	8.84	3.75
Merged-chr2-118602041-3	chr2	118601524	118602524	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009773, intron 2 of 22)	PB1D10|SINE|Alu	3813.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	31.46	24.42	14.8	54.65	29.39	25.72	143.64	143.26	94.93
Merged-chr2-35506822-3	chr2	35506330	35507330	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45381.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	59.49	48.84	32.37	85.01	46.65	65.11	24.29	19.9	15.61
Merged-chr1-10232407-3	chr1	10231877	10232877	+	952.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001102430, exon 1 of 38)	exon (NM_001102430, exon 1 of 38)	293.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	114.41	47.0	83.25	73.54	25.66	60.28	101.39	34.49	48.09
Merged-chr4-132211701-3	chr4	132211182	132212182	+	952.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145393, intron 1 of 4)	CpG-10406	574.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	220.24	156.21	153.54	176.1	166.54	182.46	211.24	147.68	114.29
Merged-chr2-58184318-2	chr2	58183812	58184812	+	952.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20338.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	9.72	11.06	6.47	22.27	21.46	40.99	12.67	10.61	14.36
Merged-chr1-135540459-3	chr1	135539966	135540966	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	44889.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	11.44	5.53	9.25	6.75	0.93	3.22	4.22	1.77	3.12
Merged-chr1-171130056-2	chr1	171129546	171130546	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025321, intron 5 of 5)	intron (NM_025321, intron 5 of 5)	8385.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	175.62	95.38	76.77	153.16	82.57	118.96	74.99	61.9	47.46
Merged-chr6-51567487-2	chr6	51566988	51567988	+	952.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22195.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	25.74	17.97	11.1	13.49	14.46	11.25	9.51	6.19	9.37
Merged-chr1-52734380-1	chr1	52733880	52734880	+	952.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7022.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.15	3.23	2.77	5.4	3.73	6.43	4.22	5.31	1.25
Merged-chr9-123926299-3	chr9	123925804	123926804	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42388.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	224.25	143.76	130.42	165.31	96.57	145.49	193.28	156.09	91.18
Merged-chr1-191259321-3	chr1	191258808	191259808	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34854.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	13.73	3.23	11.1	13.49	7.46	3.22	9.51	10.61	5.0
Merged-chr8-13964656-3	chr8	13964158	13965158	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	10119.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	8.01	2.76	8.32	8.1	2.8	9.65	3.17	3.1	5.0
Merged-chr2-93461007-3	chr2	93460496	93461496	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	855.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	58.92	29.95	35.15	31.04	14.46	9.65	23.24	8.84	9.99
Merged-chr9-77688941-3	chr9	77688440	77689440	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52208.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	17.73	17.51	11.1	24.29	19.13	12.86	15.84	13.27	9.37
Merged-chr13-8839418-3	chr13	8838937	8839937	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 9 of 13)	intron (NM_001039388, intron 9 of 13)	31607.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	28.6	22.58	12.95	24.96	16.33	27.33	20.07	17.69	17.49
Merged-chr15-95906511-3	chr15	95906014	95907014	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-76442.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	25.17	24.42	24.05	39.13	21.93	33.76	33.8	31.39	28.1
Merged-chr1-134435620-3	chr1	134435113	134436113	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19918.0	NM_153128	240756.0	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	8.01	8.29	1.85	9.45	6.53	4.82	4.22	7.07	12.49
Merged-chrX-71284929-3	chrX	71284435	71285435	+	952.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164192, intron 7 of 13)	intron (NM_001164192, intron 7 of 13)	69861.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	86.95	121.65	47.17	86.36	72.31	61.09	92.94	81.8	56.21
Merged-chr2-128741148-3	chr2	128740659	128741659	+	952.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	42244.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	69.22	41.47	50.87	68.15	46.65	39.39	74.99	45.54	38.72
Merged-chr9-45102803-2	chr9	45102302	45103302	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15074.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	37.18	23.96	11.1	33.06	25.19	32.96	4.22	1.77	2.5
Merged-chr9-40762507-3	chr9	40762001	40763001	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-38772.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	72.65	82.02	54.57	57.35	44.32	65.11	14.79	15.92	14.36
Merged-chr10-111771493-3	chr10	111771001	111772001	+	952.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102875.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	9.15	14.28	10.17	21.59	5.13	11.25	20.07	7.07	1.87
Merged-chr4-89458080-2	chr4	89457595	89458595	+	952.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147063.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	7.44	23.96	5.55	10.8	17.26	24.11	14.79	19.46	12.49
Merged-chr9-20642723-3	chr9	20642171	20643171	+	952.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153857)	promoter-TSS (NR_153857)	-46.0	NM_001361025	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	39.47	30.41	15.72	22.27	16.79	25.72	40.14	30.51	16.24
Merged-chr1-118567843-3	chr1	118567336	118568336	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 33 of 39)	intron (NM_001359330, intron 33 of 39)	-60109.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	7.44	8.75	14.8	8.1	10.26	12.06	12.67	9.29	6.25
Merged-chr6-120954147-3	chr6	120953658	120954658	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-4686.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	47.48	53.91	21.27	45.88	29.39	27.33	26.4	24.32	41.22
Merged-chr14-76114806-3	chr14	76114298	76115298	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013745, intron 3 of 9)	intron (NM_013745, intron 3 of 9)	3907.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	22.31	23.96	24.05	30.36	20.53	22.51	39.08	34.49	29.35
Merged-chr4-132513608-3	chr4	132513125	132514125	+	952.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3169.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	73.79	56.22	33.3	87.71	66.24	61.89	88.72	105.68	38.72
Merged-chr10-26374240-3	chr10	26373804	26374804	+	952.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347467)	promoter-TSS (NM_001347467)	-232.0	NM_001359254	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	37.18	24.88	45.32	43.18	32.19	47.42	36.97	25.65	25.61
Merged-chr12-99563670-4	chr12	99563162	99564162	+	952.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_136760)	promoter-TSS (NR_136760)	-179.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	168.76	179.71	123.02	145.06	124.09	110.12	176.38	168.47	96.8
Merged-chr7-3275987-3	chr7	3275476	3276476	+	952.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13062.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	11.44	9.68	7.4	12.82	4.2	10.45	16.9	7.96	11.24
Merged-chr9-40974227-3	chr9	40973735	40974735	+	952.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019465, intron 9 of 9)	MTEa|LTR|ERVL-MaLR	-9682.0	NM_001357359	70989.0	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	junctional cadherin complex regulator	protein-coding	4.58	4.15	5.55	4.72	7.0	4.82	2.11	4.86	3.75
Merged-chr17-56810454-3	chr17	56809962	56810962	+	952.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	20546.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	20.59	5.99	8.32	8.1	1.4	0.0	8.45	2.65	0.0
Merged-chr7-130968686-3	chr7	130968193	130969193	+	952.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	32490.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	21.17	14.75	9.25	8.77	9.8	8.04	13.73	9.73	8.74
Merged-chr3-139110233-3	chr3	139109723	139110723	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35022.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	12.01	5.99	12.95	11.47	7.46	4.82	8.45	9.29	6.25
Merged-chr19-11465064-3	chr19	11464594	11465594	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4274.0	NM_001166376	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	15.45	26.73	25.9	20.24	26.12	18.49	16.9	25.2	21.23
Merged-chr13-23745592-3	chr13	23745084	23746084	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175653)	promoter-TSS (NM_175653)	-63.0	NM_175653	319148.0	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	258.0	305.5	135.97	213.89	293.43	174.42	229.19	332.95	104.92
Merged-chr5-23616637-3	chr5	23616153	23617153	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-82.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	125.28	206.89	115.62	167.33	223.92	162.37	227.08	229.04	126.78
Merged-chr12-9007186-3	chr12	9006699	9007699	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 15 of 27)	intron (NM_172470, intron 15 of 27)	-22798.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	38.33	22.58	24.05	31.04	34.99	31.35	48.58	31.39	18.11
Merged-chr18-44383173-3	chr18	44382670	44383670	+	952.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	2670.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	26.31	36.4	31.45	26.99	20.99	28.94	33.8	23.88	12.49
Merged-chr1-135535498-3	chr1	135534986	135535986	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 2 of 28)	intron (NM_173437, intron 2 of 28)	49869.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	157.31	158.05	141.52	143.04	157.68	121.37	85.55	85.78	74.32
Merged-chr19-53600901-2	chr19	53600391	53601391	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007790, intron 1 of 28)	CpG	495.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	86.38	57.6	45.32	84.34	51.78	73.14	62.31	45.54	44.34
Merged-chr4-6444049-3	chr4	6443545	6444545	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	10226.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	40.62	30.87	27.75	25.64	14.93	24.11	19.01	16.36	10.62
Merged-chr3-27228246-3	chr3	27227758	27228758	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	45254.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	17.16	6.91	10.17	76.92	43.85	64.3	71.82	95.95	36.85
Merged-chr10-44729617-3	chr10	44729137	44730137	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-270889.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	82.95	59.44	40.7	105.93	64.84	81.99	83.44	93.74	41.22
Merged-chr4-55472804-2	chr4	55472294	55473294	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53952.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	5.72	5.07	1.85	6.07	4.67	11.25	5.28	6.19	2.5
Merged-chrX-71206323-3	chrX	71205816	71206816	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4451.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	16.02	34.1	5.55	21.59	14.93	31.35	17.96	31.39	14.99
Merged-chr17-26544548-1	chr17	26544048	26545048	+	952.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16964.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	21.17	9.22	8.32	20.24	8.86	4.82	9.51	4.86	14.99
Merged-chr1-157411956-1	chr1	157411456	157412456	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027984)	promoter-TSS (NR_027984)	-396.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	47.48	27.19	36.07	46.56	41.52	75.56	50.7	29.18	24.36
Merged-chr18-46434623-3	chr18	46434124	46435124	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	31192.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	39.47	13.36	13.87	40.48	15.39	17.68	24.29	13.27	16.86
Merged-chr19-10287644-1	chr19	10287144	10288144	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	MLTR14|LTR|ERV1	17233.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	9.15	6.91	7.4	9.45	5.13	9.65	13.73	5.75	6.25
Merged-chr2-169700407-3	chr2	169699926	169700926	+	952.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	66780.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	18.31	20.27	16.65	29.01	16.33	31.35	87.66	86.66	33.72
Merged-chr11-86955878-1	chr11	86955378	86956378	+	952.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37884.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	21.74	13.82	12.95	31.04	25.19	6.43	22.18	14.15	1.87
Merged-chr19-34511286-3	chr19	34510811	34511811	+	951.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	16163.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	80.66	78.79	75.85	82.99	70.44	73.95	55.98	55.71	53.71
Merged-chr2-129625207-3	chr2	129624707	129625707	+	951.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	29745.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	26.89	29.49	22.2	18.89	15.86	28.13	23.24	22.55	19.36
Merged-chr12-111071293-3	chr12	111070798	111071798	+	951.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	PB1|SINE|Alu	31500.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	148.16	137.77	121.17	153.16	144.15	130.21	151.03	224.18	99.92
Merged-chr17-32268863-2	chr17	32268367	32269367	+	951.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	15256.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	33.18	51.15	35.15	68.15	55.05	61.09	52.81	57.04	49.96
Merged-chr2-102986581-2	chr2	102986079	102987079	+	951.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84914.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	34.9	17.97	11.1	56.0	41.05	50.64	49.64	40.68	30.6
Merged-chr19-16133593-5	chr19	16133033	16134033	+	951.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	CpG	702.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	180.2	130.86	242.34	168.0	86.3	171.21	216.52	112.31	126.78
Merged-chr7-105739207-3	chr7	105738708	105739708	+	951.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161724, intron 2 of 12)	intron (NM_001161724, intron 2 of 12)	-1823.0	NM_133951	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	18.31	17.51	18.5	19.57	14.0	24.92	25.35	13.71	14.36
Merged-chr14-45291825-2	chr14	45291310	45292310	+	951.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015774, intron 13 of 15)	intron (NM_015774, intron 13 of 15)	26762.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	5.72	4.61	1.85	8.77	10.26	9.65	11.62	7.52	8.12
Merged-chr14-26441250-3	chr14	26440736	26441736	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 14 of 22)	PB1D10|SINE|Alu	83689.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	98.97	155.28	41.62	160.58	149.28	100.47	167.93	196.32	87.43
Merged-chr1-52100676-3	chr1	52100181	52101181	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308266, intron 18 of 24)	intron (NM_001308266, intron 18 of 24)	-18757.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	10.87	5.99	1.85	6.75	3.27	1.61	6.34	7.07	12.49
Merged-chr9-116088077-3	chr9	116087579	116088579	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	87284.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	28.03	30.41	24.05	36.43	17.73	22.51	15.84	34.05	16.24
Merged-chr12-25303664-3	chr12	25303173	25304173	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174499.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	18.88	14.75	12.02	18.89	11.2	8.84	19.01	18.13	13.12
Merged-chr2-167271308-3	chr2	167270823	167271823	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30786.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	26.89	26.26	14.8	39.81	24.72	32.15	55.98	45.1	23.11
Merged-chr9-54555255-3	chr9	54554736	54555736	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019686, intron 1 of 5)	intron (NM_019686, intron 1 of 5)	4843.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	15.45	15.21	18.5	19.57	17.73	24.11	17.96	8.84	18.11
Merged-chr13-99030765-3	chr13	99030269	99031269	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46204.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	16.02	13.36	8.32	14.17	11.2	17.68	11.62	11.94	9.37
Merged-chr9-90276391-3	chr9	90275885	90276885	+	951.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	94.96	120.26	127.64	76.24	63.45	113.33	137.3	112.31	82.44
Merged-chr16-23985553-3	chr16	23985050	23986050	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	3302.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	63.5	50.23	50.87	46.56	41.05	60.28	74.99	42.89	52.46
Merged-chr7-128129446-3	chr7	128128957	128129957	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-111.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	71.51	43.77	28.67	73.54	34.52	24.11	45.42	37.14	18.74
Merged-chr18-9485432-3	chr18	9484926	9485926	+	951.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35272.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	33.75	14.75	7.4	81.64	57.38	20.09	72.88	52.62	6.87
Merged-chr1-24553614-3	chr1	24553116	24554116	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 4 of 50)	intron (NM_007733, intron 4 of 50)	33821.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	3.43	4.15	9.25	2.7	6.53	4.82	0.0	4.42	0.0
Merged-chr9-63614307-3	chr9	63613819	63614819	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11673.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	177.91	207.81	109.14	172.05	150.22	118.96	222.86	279.01	84.94
Merged-chr2-163736118-3	chr2	163735614	163736614	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272052, intron 2 of 11)	intron (NM_001272052, intron 2 of 11)	14125.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	15.45	9.68	6.47	11.47	6.53	10.45	4.22	5.75	10.62
Merged-chr8-46141077-3	chr8	46140585	46141585	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16939.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	160.18	199.06	163.72	159.23	135.29	101.28	180.61	228.6	110.54
Merged-chr9-32198925-3	chr9	32198435	32199435	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 9 of 21)	(CAAAA)n|Simple_repeat|Simple_repeat	-25314.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	16.59	20.27	9.25	10.12	11.66	17.68	8.45	10.61	7.49
Merged-chr15-72833793-3	chr15	72833252	72834252	+	951.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	L2|LINE|L2	-23428.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	25.17	23.04	27.75	14.84	16.33	10.45	29.57	30.51	18.11
Merged-chr5-100860846-3	chr5	100860345	100861345	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172715, intron 3 of 12)	intron (NM_172715, intron 3 of 12)	14616.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	13.73	12.9	17.57	5.4	12.13	4.02	8.45	6.63	6.25
Merged-chr10-86887019-2	chr10	86886519	86887519	+	951.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 42 of 68)	intron (NM_138673, intron 42 of 68)	108014.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	133.86	132.71	105.44	151.14	100.3	94.85	116.18	158.74	93.68
Merged-chr17-83277557-4	chr17	83277049	83278049	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62266.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	289.46	299.51	197.94	257.07	205.73	222.65	341.15	353.29	194.85
Merged-chr6-87525347-3	chr6	87524830	87525830	+	951.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	7929.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	31.46	29.95	35.15	41.83	34.99	28.94	30.63	25.2	23.11
Merged-chr2-138256647-3	chr2	138256141	138257141	+	951.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025431)	promoter-TSS (NM_001025431)	57.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	34.9	25.34	31.45	34.41	24.72	39.39	23.24	23.43	26.85
Merged-chr17-28217817-3	chr17	28217323	28218323	+	951.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027185, intron 3 of 10)	intron (NM_027185, intron 3 of 10)	10045.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	27.46	17.97	15.72	36.43	27.99	16.88	23.24	13.71	6.25
Merged-chr17-48325919-3	chr17	48325430	48326430	+	951.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177083, exon 6 of 6)	3' UTR (NM_177083, exon 6 of 6)	9768.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	34.9	41.93	48.1	64.1	30.79	57.87	52.81	30.07	41.22
Merged-chr6-82797607-3	chr6	82797103	82798103	+	951.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23149.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	84.09	121.19	74.0	93.11	121.76	120.57	156.32	131.32	91.81
Merged-chr15-81536120-4	chr15	81535618	81536618	+	951.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	61.21	68.66	38.85	50.6	30.79	37.78	89.78	90.2	39.35
Merged-chr2-163575583-3	chr2	163575123	163576123	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26691.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	53.2	14.28	23.12	58.03	29.39	36.17	23.24	15.03	8.12
Merged-chr14-98406496-1	chr14	98405996	98406996	+	951.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-236731.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	4.0	4.61	3.7	9.45	4.2	0.0	1.06	3.1	1.87
Merged-chr1-155147461-3	chr1	155146958	155147958	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355062)	promoter-TSS (NM_001355062)	-644.0	NM_008209	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	50.34	52.99	38.85	46.56	43.85	36.17	35.91	34.93	23.73
Merged-chr12-84019229-3	chr12	84018731	84019731	+	951.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9729.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	93.82	63.13	68.45	95.14	80.24	112.53	72.88	65.0	46.22
Merged-chr4-135254947-1	chr4	135254447	135255447	+	951.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	17813.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	88.67	66.35	43.47	76.92	88.64	70.73	17.96	32.28	23.11
Merged-chr3-65930483-2	chr3	65929986	65930986	+	951.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27763.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	59.49	55.75	24.05	72.19	42.45	27.33	52.81	40.24	29.98
Merged-chr5-121597584-3	chr5	121597119	121598119	+	951.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178799)	TTS (NM_178799)	-3795.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	100.68	99.99	75.85	120.1	119.43	121.37	140.47	143.7	95.55
Merged-chr7-109613945-3	chr7	109613439	109614439	+	951.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001326, intron 1 of 19)	intron (NM_001001326, intron 1 of 19)	2629.0	NR_037617	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	1.72	5.99	5.55	10.12	4.2	4.82	4.22	1.77	1.25
Merged-chr1-156672897-3	chr1	156672380	156673380	+	951.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 2 of 5)	RMER17C|LTR|ERVK	1459.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	43.48	56.22	24.97	56.0	44.78	37.78	31.69	30.95	21.23
Merged-chr10-53893244-3	chr10	53892734	53893734	+	951.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-142325.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	7.44	4.15	0.0	9.45	7.46	8.04	1.06	5.31	2.5
Merged-chr3-152555318-3	chr3	152554851	152555851	+	951.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-111562.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	18.31	7.83	12.95	24.29	6.53	17.68	17.96	12.38	3.75
Merged-chr1-185277186-1	chr1	185276686	185277686	+	951.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163754, exon 30 of 35)	exon (NM_001163754, exon 30 of 35)	34211.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	6.29	3.23	5.55	12.14	11.2	13.66	5.28	1.77	4.37
Merged-chr7-74645757-3	chr7	74645259	74646259	+	951.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90979.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	2.86	3.69	1.85	5.4	2.8	8.04	4.22	3.54	8.12
Merged-chr4-75297665-3	chr4	75297173	75298173	+	951.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19381.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	12.59	19.35	26.82	4.72	11.66	18.49	28.52	19.01	20.61
Merged-chr7-80029817-3	chr7	80029291	80030291	+	951.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	3563.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	57.78	59.44	34.22	78.27	62.98	86.01	73.93	67.65	63.7
Merged-chr3-135630163-3	chr3	135629656	135630656	+	951.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	61391.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	24.6	27.65	12.95	23.62	8.86	23.31	27.46	30.07	18.74
Merged-chr1-79672043-3	chr1	79671547	79672547	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183027)	promoter-TSS (NM_183027)	-75.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	16.59	13.82	2.77	8.1	7.93	0.0	6.34	8.4	3.75
Merged-chr10-60259875-2	chr10	60259368	60260368	+	951.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17760.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	85.24	71.88	75.85	75.57	46.18	95.65	133.08	90.2	49.96
Merged-chr3-103130485-3	chr3	103129970	103130970	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177857, intron 1 of 18)	intron (NM_177857, intron 1 of 18)	2914.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	19.45	12.9	1.85	25.64	14.0	21.7	10.56	2.65	2.5
Merged-chr12-113026822-2	chr12	113026315	113027315	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	12307.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	13.16	9.22	24.97	23.62	9.8	24.11	25.35	16.36	22.48
Merged-chr18-17730452-3	chr18	17729947	17730947	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149457.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	13.16	12.9	7.4	29.69	24.26	10.45	5.28	10.17	8.74
Merged-chr13-59856939-3	chr13	59856469	59857469	+	951.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33822.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	33.75	40.09	29.6	51.95	65.78	65.91	20.07	10.61	5.62
Merged-chr11-29172226-3	chr11	29171771	29172771	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134034)	promoter-TSS (NM_134034)	-636.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	51.48	46.08	37.0	36.43	51.78	36.97	28.52	45.54	34.35
Merged-chr6-29484897-3	chr6	29484410	29485410	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029985, exon 34 of 38)	exon (NM_001029985, exon 34 of 38)	13473.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	72.65	70.96	44.4	66.12	81.17	73.95	91.89	84.45	21.23
Merged-chr14-105501116-3	chr14	105500597	105501597	+	951.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	2309.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	14.87	6.45	11.1	8.1	3.27	11.25	8.45	4.86	8.74
Merged-chr9-40744407-3	chr9	40743927	40744927	+	951.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-56846.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	200.22	200.44	125.79	210.51	153.01	155.93	33.8	23.43	14.36
Merged-chr6-30300537-3	chr6	30300039	30301039	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	4000.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	34.32	35.02	20.35	36.43	22.39	28.94	30.63	38.91	26.85
Merged-chr9-21136605-3	chr9	21136119	21137119	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5344.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	181.34	163.12	136.89	118.75	95.63	90.83	157.37	198.98	74.94
Merged-chr14-73140823-3	chr14	73140384	73141384	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1626.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	109.83	110.59	88.8	97.16	107.3	120.57	101.39	105.68	66.82
Merged-chr11-101172120-3	chr11	101171631	101172631	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346769)	promoter-TSS (NM_001346769)	-759.0	NM_001346769	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	63.5	84.78	71.22	69.5	86.77	86.01	83.44	129.11	74.94
Merged-chr3-54668932-3	chr3	54668416	54669416	+	951.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23899.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	32.04	41.93	11.1	18.22	26.12	45.82	31.69	39.8	19.98
Merged-chr14-74908499-3	chr14	74908008	74909008	+	951.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	39369.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	8.58	13.36	16.65	11.47	5.6	16.88	11.62	12.82	9.99
Merged-chrX-162902059-5	chrX	162901495	162902495	+	951.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033143)	promoter-TSS (NR_033143)	-176.0	NR_033143	55936.0	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	45.19	41.01	38.85	48.58	65.31	56.27	35.91	60.58	41.84
Merged-chr13-117031856-2	chr13	117031366	117032366	+	951.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6350.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	14.3	9.22	8.32	7.42	5.6	1.61	2.11	4.86	4.37
Merged-chr1-94058514-3	chr1	94057999	94058999	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-5946.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	9.15	7.83	8.32	6.07	4.2	8.04	2.11	4.42	9.99
Merged-chr2-160363344-1	chr2	160362844	160363844	+	951.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010658)	TTS (NM_010658)	3721.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	40.62	39.63	37.92	56.0	43.85	44.21	57.03	54.39	29.35
Merged-chr12-98835661-3	chr12	98835169	98836169	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	64647.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	13.73	11.06	3.7	10.8	7.93	0.0	12.67	7.96	3.12
Merged-chr13-97441332-3	chr13	97440802	97441802	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	6332.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	81.8	82.02	65.67	35.76	27.06	52.25	60.2	61.9	26.23
Merged-chr16-73597571-3	chr16	73597039	73598039	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	744528.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	13.73	18.89	14.8	45.21	21.93	29.74	42.25	19.01	17.49
Merged-chr8-94935338-3	chr8	94934838	94935838	+	951.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033468, intron 6 of 11)	MLT1K|LTR|ERVL-MaLR	11644.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	6.29	5.53	1.85	5.4	3.27	0.0	3.17	0.88	1.25
Merged-chr12-98270126-6	chr12	98269614	98270614	+	951.2824099999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	1479.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	207.66	228.09	168.34	196.34	167.48	166.38	284.11	284.31	192.98
Merged-chr7-107607971-3	chr7	107607478	107608478	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	1134.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	13.16	9.68	12.95	17.54	9.33	13.66	12.67	5.31	6.87
Merged-chr9-66915593-3	chr9	66915094	66916094	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	4111.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	83.52	83.4	86.02	73.54	69.51	62.7	98.23	87.55	62.45
Merged-chr15-81905194-3	chr15	81904708	81905708	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080633, intron 7 of 17)	Tigger20a|DNA|TcMar-Tigger	21005.0	NM_030229	78929.0	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	10.3	2.76	6.47	9.45	6.06	9.65	6.34	4.42	7.49
Merged-chr14-103826561-3	chr14	103826072	103827072	+	951.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17129.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	19.45	16.59	3.7	40.48	37.32	52.25	32.74	30.51	25.61
Merged-chr15-99498137-3	chr15	99497628	99498628	+	951.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-23398.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	30.32	19.81	24.05	24.96	16.33	26.53	23.24	21.22	29.98
Merged-chr14-47187959-6	chr14	47187463	47188463	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	1450.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	149.31	143.3	83.25	151.81	126.89	151.11	160.54	142.82	103.05
Merged-chr8-85408287-3	chr8	85407779	85408779	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025722)	TTS (NM_025722)	24562.0	NR_033144	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	9.72	9.68	3.7	13.49	7.93	6.43	10.56	6.19	15.61
Merged-chr13-58478610-3	chr13	58478117	58479117	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75274.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	140.73	158.51	113.77	180.82	192.67	126.19	138.36	191.46	74.94
Merged-chr5-38509041-3	chr5	38508537	38509537	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-6885.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	14.87	9.68	14.8	6.75	14.46	19.29	19.01	14.15	8.74
Merged-chr14-64658543-3	chr14	64658048	64659048	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	6017.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	44.05	29.95	44.4	26.99	17.73	21.7	38.02	20.34	11.24
Merged-chr12-79138104-3	chr12	79137595	79138595	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	MLT1A1|LTR|ERVL-MaLR	7307.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	24.6	22.58	7.4	103.23	82.57	104.49	42.25	40.68	24.98
Merged-chr17-78419362-3	chr17	78418837	78419837	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1185.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	22.88	30.87	24.05	22.27	22.39	45.82	39.08	37.58	14.36
Merged-chr4-32363647-3	chr4	32363164	32364164	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53771.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	75.51	32.72	12.95	76.92	47.58	38.58	7.39	1.33	3.12
Merged-chr2-11395159-3	chr2	11394661	11395661	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040615, intron 1 of 2)	RLTR25B|LTR|ERVK	3339.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	29.17	34.56	31.45	39.81	43.39	36.97	63.37	40.68	32.48
Merged-chr19-34662255-3	chr19	34661753	34662753	+	951.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	21364.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	10.3	8.29	5.55	14.84	13.06	9.65	16.9	8.84	11.24
Merged-chr7-49454788-3	chr7	49454268	49455268	+	951.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	182067.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	4.58	4.15	5.55	12.14	2.8	5.63	7.39	2.65	5.0
Merged-chr7-125623379-3	chr7	125622848	125623848	+	951.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 2 of 8)	intron (NM_021887, intron 2 of 8)	19919.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	49.77	37.32	49.02	99.18	70.44	91.63	32.74	33.16	13.74
Merged-chr9-96675640-3	chr9	96675127	96676127	+	951.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43818.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	13.16	5.53	5.55	4.72	6.53	2.41	7.39	7.52	1.87
Merged-chr16-24625126-2	chr16	24624596	24625596	+	951.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	95782.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	484.53	464.47	295.99	443.96	388.6	281.33	458.38	489.04	189.86
Merged-chr14-46179226-2	chr14	46178727	46179727	+	951.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95200.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	17.73	22.12	17.57	31.04	24.72	16.08	4.22	4.42	2.5
Merged-chr1-138267883-3	chr1	138267395	138268395	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5843.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	50.91	41.47	31.45	45.88	47.58	34.56	45.42	58.81	50.59
Merged-chr10-94609415-3	chr10	94608921	94609921	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23222.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	11.44	2.76	7.4	6.07	7.0	2.41	2.11	1.77	0.0
Merged-chr4-141761765-3	chr4	141761276	141762276	+	951.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172338)	TTS (NM_172338)	15101.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	17.73	17.97	5.55	43.86	24.26	32.96	1.06	9.73	5.0
Merged-chr5-111219851-2	chr5	111219345	111220345	+	951.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-110852.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	21.17	5.53	8.32	20.24	14.46	6.43	7.39	1.77	5.0
Merged-chr9-88720425-3	chr9	88719894	88720894	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128601)	promoter-TSS (NM_001128601)	-596.0	NM_001128601	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	38.9	42.85	36.07	43.18	45.72	53.85	43.3	52.62	38.72
Merged-chr7-75669582-3	chr7	75669063	75670063	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-178775.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	96.11	99.53	63.82	105.26	88.17	75.56	91.89	71.19	55.58
Merged-chr13-58481357-3	chr13	58480817	58481817	+	951.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77974.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	29.75	17.05	20.35	58.03	41.52	34.56	33.8	28.3	25.61
Merged-chr5-34187181-3	chr5	34186701	34187701	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010753, intron 2 of 5)	CpG	509.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	29.17	16.59	40.7	42.51	21.93	39.39	36.97	16.8	13.12
Merged-chr15-4727091-3	chr15	4726610	4727610	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016704)	promoter-TSS (NM_016704)	-100.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	39.47	71.42	35.15	95.14	81.64	84.4	109.84	124.69	40.59
Merged-chr11-32541479-3	chr11	32540971	32541971	+	951.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	MLT1A0|LTR|ERVL-MaLR	8205.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	85.81	114.74	102.67	116.73	129.69	149.5	99.28	99.93	63.7
Merged-chr5-99978007-4	chr5	99977307	99978307	+	951.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077265, intron 1 of 8)	CpG	1131.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	92.1	95.84	141.52	74.89	89.57	86.01	103.51	101.26	79.32
Merged-chr12-54959772-3	chr12	54959277	54960277	+	951.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 3 of 26)	L1MB4|LINE|L1	26559.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	15.45	33.64	25.9	20.24	14.0	14.47	20.07	22.55	14.99
Merged-chr9-44320849-3	chr9	44320349	44321349	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027909)	promoter-TSS (NM_027909)	-567.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	37.76	25.34	31.45	37.11	20.53	25.72	29.57	14.59	13.12
Merged-chr5-139465091-3	chr5	139464594	139465594	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4560.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	84.09	103.22	44.4	118.75	86.77	65.11	98.23	73.84	54.33
Merged-chr6-36898626-1	chr6	36898126	36899126	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 27 of 32)	intron (NM_001347104, intron 27 of 32)	-88447.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.57	3.23	0.0	4.05	5.6	4.02	5.28	2.21	3.75
Merged-chr14-27178353-1	chr14	27177853	27178853	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34360.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	14.87	12.9	16.65	33.74	21.46	36.17	14.79	8.4	9.99
Merged-chr13-30085199-3	chr13	30084695	30085695	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51295.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	7.44	6.91	5.55	4.05	1.4	2.41	9.51	6.63	5.0
Merged-chr3-109451635-3	chr3	109451131	109452131	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	110948.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	78.37	81.1	76.77	72.87	79.77	83.59	58.09	76.05	49.96
Merged-chr12-119164270-1	chr12	119163770	119164770	+	951.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 12 of 13)	intron (NM_177290, intron 12 of 13)	74006.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	5.72	1.38	3.7	5.4	2.8	0.0	2.11	4.86	5.0
Merged-chr11-51263590-2	chr11	51263078	51264078	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358279)	promoter-TSS (NM_001358279)	84.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	565.19	674.59	465.25	560.02	703.49	465.39	514.36	630.53	327.88
Merged-chr8-8462005-2	chr8	8461520	8462520	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198753.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.72	5.07	3.7	8.1	7.0	3.22	8.45	8.4	8.74
Merged-chr9-113026250-1	chr9	113025750	113026750	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	560902.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	7.44	6.91	1.85	20.24	9.33	13.66	3.17	8.4	8.74
Merged-chr1-166002326-1	chr1	166001826	166002826	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	CpG	308.0	NM_011137	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	106.4	49.3	48.1	99.18	62.98	54.66	125.69	62.79	43.72
Merged-chr15-67989791-1	chr15	67989291	67990291	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	269065.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.29	5.53	0.0	11.47	8.86	4.02	7.39	1.77	2.5
Merged-chr7-128740106-1	chr7	128739606	128740606	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	CpG	323.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	230.54	159.89	235.86	186.22	118.03	163.97	161.6	102.58	110.54
Merged-chr2-18923289-1	chr2	18922789	18923789	+	951.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	74832.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	13.73	16.13	16.65	6.75	10.26	6.43	8.45	4.42	5.62
Merged-chr19-57273422-3	chr19	57272927	57273927	+	951.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045319)	promoter-TSS (NR_045319)	-533.0	NR_045319	78120.0	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	25.17	21.2	25.9	33.06	31.72	40.19	23.24	24.76	21.23
Merged-chr17-80706597-3	chr17	80706117	80707117	+	950.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	21408.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	4.58	7.37	0.92	4.72	6.53	5.63	9.51	4.42	3.12
Merged-chr8-71487847-3	chr8	71487335	71488335	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032544)	promoter-TSS (NM_032544)	-268.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	16.02	35.02	55.5	37.78	39.65	69.13	34.85	30.95	44.34
Merged-chr2-79321844-3	chr2	79321339	79322339	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 24 of 27)	intron (NM_010576, intron 24 of 27)	66413.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	20.02	27.19	24.05	31.71	20.06	21.7	45.42	50.41	21.86
Merged-chr6-81987156-3	chr6	81986673	81987673	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-21224.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	14.87	2.3	6.47	19.57	7.0	0.0	7.39	3.98	1.25
Merged-chr3-132753112-3	chr3	132752597	132753597	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	68953.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	24.6	41.47	23.12	26.31	29.39	8.04	29.57	21.22	24.36
Merged-chr8-111990122-3	chr8	111989624	111990624	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357185, intron 2 of 8)	intron (NM_001357185, intron 2 of 8)	2178.0	NM_001357184	30947.0	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	3.43	5.99	7.4	2.7	2.8	1.61	3.17	3.54	7.49
Merged-chrX-13518226-3	chrX	13517718	13518718	+	950.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001284504, exon 24 of 24)	3' UTR (NM_001284504, exon 24 of 24)	50546.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	17.16	11.98	11.1	26.99	14.46	25.72	12.67	11.94	11.24
Merged-chr2-59231790-3	chr2	59231305	59232305	+	950.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	70955.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	57.21	21.2	32.37	60.05	27.99	30.54	40.14	28.74	18.11
Merged-chr19-29355695-3	chr19	29355181	29356181	+	950.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6190.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	21.17	14.28	16.65	17.54	20.53	24.11	26.4	18.13	13.12
Merged-chr6-38982282-3	chr6	38981787	38982787	+	950.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	MTD|LTR|ERVL-MaLR	63301.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	134.43	79.25	37.92	126.85	81.17	66.71	120.41	143.26	54.33
Merged-chr7-34132653-3	chr7	34132147	34133147	+	950.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207212, exon 1 of 8)	exon (NM_207212, exon 1 of 8)	621.0	NM_207212	101543.0	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	50.91	35.48	55.5	57.35	27.06	33.76	51.75	16.8	18.11
Merged-chr11-102156355-3	chr11	102155859	102156859	+	950.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029649)	promoter-TSS (NM_029649)	48.0	NM_029649	76547.0	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	18.31	10.6	14.8	30.36	27.06	52.25	24.29	17.24	19.36
Merged-chr19-37689657-3	chr19	37689155	37690155	+	950.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105201, intron 4 of 5)	intron (NM_001105201, intron 4 of 5)	3975.0	NM_001105201	546726.0	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	78.94	65.43	44.4	86.36	89.1	75.56	47.53	62.35	29.98
Merged-chr1-33912766-3	chr1	33912254	33913254	+	950.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	4529.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	62.93	52.99	54.57	29.01	29.86	29.74	11.62	22.99	22.48
Merged-chr1-184590843-3	chr1	184590358	184591358	+	950.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33167.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	9.15	11.06	14.8	21.59	9.33	13.66	5.28	9.73	11.24
Merged-chr10-118810878-2	chr10	118810360	118811360	+	950.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58043.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	167.04	97.69	84.17	150.46	75.57	118.16	139.42	136.19	96.8
Merged-chr10-120883036-2	chr10	120882536	120883536	+	950.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	15935.0	NM_177092	320183.0	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	37.76	22.58	7.4	35.76	22.39	22.51	22.18	14.59	14.99
Merged-chr10-14959620-1	chr10	14959120	14960120	+	950.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199331.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	22.88	29.03	13.87	51.95	40.59	29.74	33.8	30.51	9.99
Merged-chr9-32507705-3	chr9	32507202	32508202	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33750.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	66.93	77.41	73.07	80.97	63.91	63.5	68.65	56.16	47.46
Merged-chr10-14042814-3	chr10	14042324	14043324	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	76445.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	109.26	101.83	85.1	116.05	93.77	70.73	96.11	79.15	52.46
Merged-chr3-61407104-3	chr3	61406617	61407617	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	42610.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	40.04	41.93	44.4	44.53	34.06	67.52	52.81	38.91	47.46
Merged-chr8-37062882-1	chr8	37062382	37063382	+	950.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38644.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.86	3.23	2.77	1.35	1.4	0.0	4.22	6.19	1.87
Merged-chr17-46889620-3	chr17	46889125	46890125	+	950.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178385)	promoter-TSS (NM_178385)	-996.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	53.77	69.58	62.9	82.99	80.71	69.13	83.44	74.28	45.59
Merged-chr16-24919888-3	chr16	24919391	24920391	+	950.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-139748.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	86.95	121.65	65.67	101.21	129.69	74.75	113.01	123.81	59.33
Merged-chr18-65691605-3	chr18	65691100	65692100	+	950.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6668.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	161.89	193.99	117.47	197.69	205.26	181.66	210.18	213.12	121.16
Merged-chr6-126853243-3	chr6	126852728	126853728	+	950.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009650, exon 1 of 6)	5' UTR (NM_009650, exon 1 of 6)	130.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	14.3	10.14	12.02	12.14	16.79	12.06	15.84	10.61	9.99
Merged-chr14-26814076-3	chr14	26813566	26814566	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80538.0	NM_001170748	142687.0	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	7.44	8.29	5.55	6.07	11.2	8.04	26.4	12.82	11.87
Merged-chr10-78137331-3	chr10	78136826	78137826	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32442.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	37.18	21.66	24.05	20.24	6.53	16.88	10.56	18.13	6.87
Merged-chr12-105684545-3	chr12	105684047	105685047	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178613)	promoter-TSS (NM_178613)	694.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	203.65	205.05	113.77	234.8	289.7	177.64	223.91	227.72	103.67
Merged-chr10-123085485-3	chr10	123084979	123085979	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8974.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	17.16	17.51	22.2	28.34	18.66	30.54	16.9	13.27	17.49
Merged-chr9-32680304-3	chr9	32679798	32680798	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-15744.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	69.22	60.36	34.22	116.05	82.57	49.83	45.42	71.19	18.74
Merged-chr19-9977973-3	chr19	9977471	9978471	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2629.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	135.0	107.82	103.59	184.2	149.28	73.14	146.81	160.51	76.19
Merged-chr10-62508584-3	chr10	62508061	62509061	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011157)	promoter-TSS (NM_011157)	-804.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	294.04	314.25	201.64	253.02	283.17	261.23	273.55	285.2	180.49
Merged-chr1-135686914-3	chr1	135686409	135687409	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33154.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	15.45	11.98	4.62	18.22	7.93	4.82	8.45	8.84	6.25
Merged-chr6-125352101-3	chr6	125351595	125352595	+	950.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	2372.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	132.14	103.22	79.55	123.47	74.64	94.85	163.71	226.39	130.53
Merged-chr2-152788973-3	chr2	152788482	152789482	+	950.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34809.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	91.53	59.44	63.82	48.58	48.52	57.87	59.15	65.88	49.96
Merged-chr4-117908423-2	chr4	117907901	117908901	+	950.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146152, intron 2 of 19)	intron (NM_146152, intron 2 of 19)	6598.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	10.3	11.98	7.4	8.1	9.33	8.84	12.67	10.61	6.25
Merged-chr18-46408193-3	chr18	46407701	46408701	+	950.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57615.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	65.21	47.46	12.95	73.54	44.32	67.52	108.79	80.03	55.58
Merged-chr11-11682789-3	chr11	11682296	11683296	+	950.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3129.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	20.59	18.43	14.8	18.22	15.39	16.88	17.96	19.9	9.99
Merged-chr9-107904904-3	chr9	107904379	107905379	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2010.0	NR_109782	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	8.01	1.84	7.4	5.4	1.87	4.82	5.28	2.21	0.0
Merged-chr11-34828004-3	chr11	34827504	34828504	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027411, intron 2 of 11)	Lx7|LINE|L1	5637.0	NM_027411	70385.0	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	42.9	41.93	15.72	52.63	62.05	17.68	77.1	48.2	22.48
Merged-chr12-87470473-3	chr12	87470005	87471005	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025507, intron 1 of 13)	MTB_Mm|LTR|ERVL-MaLR	1794.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	43.48	29.95	33.3	24.29	19.59	23.31	49.64	43.33	23.11
Merged-chr5-117307856-3	chr5	117307334	117308334	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11432.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	10.87	12.44	12.02	5.4	10.26	8.04	7.39	0.88	12.49
Merged-chr17-64603348-3	chr17	64602856	64603856	+	950.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1707.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	32.04	22.58	14.8	29.01	32.66	16.08	28.52	12.82	23.11
Merged-chr4-129818917-2	chr4	129818457	129819457	+	950.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1522.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	157.89	180.17	147.07	127.52	104.96	180.05	119.35	164.49	127.4
Merged-chr18-6163197-3	chr18	6162708	6163708	+	950.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27110.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	10.87	31.79	21.27	11.47	12.13	14.47	30.63	18.57	21.86
Merged-chr16-20537571-4	chr16	20537146	20538146	+	950.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009679, exon 2 of 11)	5' UTR (NM_009679, exon 2 of 11)	2166.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	72.65	55.75	58.27	41.16	42.92	76.36	61.26	68.98	69.95
Merged-chr12-34433126-3	chr12	34432611	34433611	+	950.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024124, exon 4 of 12)	exon (NM_024124, exon 4 of 12)	95778.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	32.04	39.63	52.72	40.48	41.52	52.25	34.85	49.96	51.21
Merged-chr2-35337647-3	chr2	35337150	35338150	+	950.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013515)	promoter-TSS (NM_013515)	-641.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	185.92	177.4	143.37	155.86	124.56	139.86	191.17	225.95	111.79
Merged-chr11-98960740-5	chr11	98960365	98961365	+	950.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001176528, exon 1 of 8)	5' UTR (NM_001176528, exon 1 of 8)	394.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	224.25	210.58	201.64	172.05	128.76	184.87	248.2	176.42	154.26
Merged-chr15-98992678-3	chr15	98992194	98993194	+	950.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6729.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	113.84	83.4	59.2	96.48	64.84	83.59	91.89	87.99	51.84
Merged-chr12-44355267-2	chr12	44354776	44355776	+	950.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146031, intron 1 of 27)	intron (NM_001146031, intron 1 of 27)	26391.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	16.02	20.74	16.65	25.64	34.99	18.49	3.17	1.77	6.87
Merged-chr11-69125416-3	chr11	69124921	69125921	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011786)	promoter-TSS (NM_011786)	-956.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	55.49	49.3	37.92	89.74	81.64	52.25	63.37	67.21	31.85
Merged-chr11-117198249-3	chr11	117197750	117198750	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1411.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	42.9	17.51	32.37	51.95	32.66	36.17	70.76	45.1	29.35
Merged-chr16-55835976-3	chr16	55835493	55836493	+	950.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	2648.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	2.86	9.68	5.55	4.72	4.2	12.06	9.51	4.86	10.62
Merged-chr2-170327004-3	chr2	170326501	170327501	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29360.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	29.75	34.1	38.85	23.62	9.8	16.08	25.35	24.76	18.11
Merged-chr2-35330953-3	chr2	35330458	35331458	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	6051.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	34.32	42.39	21.27	49.93	45.25	53.05	40.14	44.66	33.1
Merged-chr4-132463968-3	chr4	132463474	132464474	+	950.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026039)	promoter-TSS (NM_026039)	-53.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	32.61	30.41	26.82	41.16	38.72	49.83	42.25	44.22	24.98
Merged-chr10-93079629-1	chr10	93079129	93080129	+	950.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	MTD|LTR|ERVL-MaLR	1967.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.0	0.0	0.0	0.67	0.47	0.0	10.56	8.84	13.74
Merged-chr1-191396277-3	chr1	191395754	191396754	+	950.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144880, exon 1 of 13)	exon (NM_144880, exon 1 of 13)	787.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	180.2	152.52	176.67	151.81	105.9	144.68	190.11	153.43	131.15
Merged-chr2-143978658-3	chr2	143978164	143979164	+	950.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	32599.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	14.87	14.28	28.67	7.42	10.26	16.08	19.01	11.94	11.87
Merged-chr12-113015261-3	chr12	113014794	113015794	+	950.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	786.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	35.47	44.7	46.25	29.01	24.26	39.39	33.8	27.86	36.22
Merged-chr12-99225449-3	chr12	99224943	99225943	+	950.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-62635.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	11.44	6.45	2.77	14.84	8.86	16.08	7.39	8.84	6.25
Merged-chr6-72395093-3	chr6	72394635	72395635	+	950.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-4468.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	116.13	143.76	91.57	100.53	69.51	130.21	116.18	164.49	99.92
Merged-chr18-36691593-3	chr18	36691102	36692102	+	950.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172831, intron 5 of 12)	intron (NM_172831, intron 5 of 12)	4323.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	10.87	5.07	0.0	6.75	6.06	3.22	2.11	2.21	2.5
Merged-chr6-135198095-3	chr6	135197656	135198656	+	950.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362111)	promoter-TSS (NM_001362111)	56.0	NM_001362111	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	13.73	22.12	31.45	18.89	23.79	27.33	20.07	12.38	10.62
Merged-chr11-117087578-3	chr11	117087080	117088080	+	950.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	10232.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	186.49	143.3	106.37	149.79	122.69	82.79	229.19	276.8	96.8
Merged-chr18-68889645-2	chr18	68889143	68890143	+	950.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038051, exon 7 of 7)	non-coding (NR_038051, exon 7 of 7)	61885.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	13.16	12.44	7.4	16.19	19.59	6.43	1.06	2.65	2.5
Merged-chr11-106759210-3	chr11	106758698	106759698	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073165, intron 4 of 9)	intron (NR_073165, intron 4 of 9)	7972.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	13.73	19.35	23.12	30.36	22.39	22.51	21.12	21.67	27.48
Merged-chr2-168553802-1	chr2	168553302	168554302	+	950.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037177, intron 3 of 6)	intron (NM_001037177, intron 3 of 6)	36563.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.29	5.07	1.85	10.12	4.2	8.04	6.34	3.54	0.62
Merged-chr15-91703236-1	chr15	91702736	91703736	+	950.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025730, intron 11 of 50)	intron (NM_025730, intron 11 of 50)	30012.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	3.43	1.38	0.0	2.7	7.0	0.0	4.22	2.65	6.25
Merged-chr4-121004854-3	chr4	121004340	121005340	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	12407.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	104.69	102.75	69.37	42.51	21.46	22.51	77.1	73.4	46.22
Merged-chr2-84936640-3	chr2	84936162	84937162	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021398)	promoter-TSS (NM_021398)	16.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	2.29	8.75	11.1	4.05	1.87	4.02	5.28	5.75	2.5
Merged-chr8-13531141-3	chr8	13530639	13531639	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31322.0	NM_025601	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	8.58	6.91	1.85	4.05	2.33	1.61	6.34	0.88	3.75
Merged-chrX-70363648-3	chrX	70363155	70364155	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010498, intron 2 of 8)	intron (NM_010498, intron 2 of 8)	1430.0	NM_010498	15931.0	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	19.45	14.75	5.55	6.75	12.6	16.88	11.62	8.4	17.49
Merged-chr17-34306601-3	chr17	34306094	34307094	+	950.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	727.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	160.18	160.35	133.19	81.64	71.84	57.07	173.21	209.59	79.32
Merged-chr17-29496904-5	chr17	29496371	29497371	+	950.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	5826.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	21.17	14.28	7.4	8.77	2.8	6.43	8.45	3.98	5.0
Merged-chr18-75696967-3	chr18	75696373	75697373	+	950.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 1 of 11)	CpG	823.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	18.88	19.35	30.52	33.74	14.93	23.31	25.35	30.95	18.11
Merged-chr18-5821568-3	chr18	5821058	5822058	+	950.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	228911.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	14.3	21.2	20.35	22.27	7.93	27.33	46.47	36.26	25.61
Merged-chr15-8451232-3	chr15	8450738	8451738	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6775.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	10.87	7.37	9.25	6.75	8.4	3.22	9.51	7.07	1.25
Merged-chr4-155481558-3	chr4	155481052	155482052	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9809.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	23.45	14.28	21.27	25.64	14.46	26.53	14.79	14.15	15.61
Merged-chr8-69089958-3	chr8	69089463	69090463	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153054)	promoter-TSS (NM_153054)	-741.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	108.69	151.6	91.57	147.09	159.08	94.04	205.96	269.72	99.3
Merged-chr17-70968343-3	chr17	70967827	70968827	+	950.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22189.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	398.72	264.49	161.87	360.97	220.66	151.11	395.01	380.71	155.51
Merged-chr15-82341288-3	chr15	82340692	82341692	+	950.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177391)	promoter-TSS (NM_177391)	13.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	66.93	61.75	46.25	76.24	59.25	77.16	57.03	33.6	27.48
Merged-chrX-50620094-2	chrX	50619604	50620604	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015505, intron 3 of 19)	intron (NR_015505, intron 3 of 19)	15217.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	5.72	10.6	7.4	10.8	13.06	12.86	12.67	17.24	6.87
Merged-chr12-85959602-2	chr12	85959091	85960091	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	119450.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	1.72	3.69	3.7	21.59	13.06	4.82	10.56	8.4	1.25
Merged-chr16-17928097-4	chr16	17927446	17928446	+	950.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153150, intron 1 of 8)	CpG-5572	273.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	133.86	122.11	111.92	115.38	95.63	107.71	107.73	90.2	64.33
Merged-chr4-129823446-2	chr4	129822949	129823949	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	2741.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	88.1	76.49	41.62	64.77	46.65	50.64	70.76	73.84	41.84
Merged-chr2-122763202-2	chr2	122762722	122763722	+	950.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2137.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	6.86	3.69	0.92	4.72	4.67	1.61	14.79	4.86	2.5
Merged-chr17-81579919-3	chr17	81579416	81580416	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	158471.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	66.93	78.79	81.4	50.6	42.45	47.42	60.2	65.0	46.22
Merged-chr16-52091078-3	chr16	52090580	52091580	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	59531.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.3	8.75	10.17	10.12	3.73	8.84	7.39	9.73	8.12
Merged-chr11-106821175-3	chr11	106820665	106821665	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025481, exon 19 of 19)	3' UTR (NM_025481, exon 19 of 19)	31913.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	148.73	117.5	61.97	155.19	139.95	102.08	98.23	114.08	49.96
Merged-chr5-123136621-3	chr5	123136132	123137132	+	950.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4003.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	160.75	151.6	110.99	172.73	118.49	139.06	192.23	209.15	120.53
Merged-chr5-105732657-3	chr5	105732169	105733169	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	31859.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	68.65	43.77	22.2	80.29	40.12	40.99	45.42	33.6	14.99
Merged-chr9-63712820-2	chr9	63712322	63713322	+	950.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	45172.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	4.58	6.45	7.4	10.8	8.4	8.84	9.51	3.98	3.12
Merged-chr17-56757578-3	chr17	56757092	56758092	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-44.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	4.0	3.23	1.85	6.75	4.2	0.0	4.22	0.88	2.5
Merged-chr6-134863388-3	chr6	134862892	134863892	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24393.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	9.72	10.14	11.1	6.75	5.6	7.23	7.39	3.54	5.0
Merged-chr15-100150741-3	chr15	100150242	100151242	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3654.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	30.89	24.88	12.95	25.64	21.93	18.49	19.01	18.57	6.25
Merged-chr1-191119097-3	chr1	191118578	191119578	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20664.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	184.2	178.78	138.74	221.98	133.42	131.02	84.49	98.6	43.72
Merged-chr5-36750587-3	chr5	36750076	36751076	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1897.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	10.87	12.44	3.7	8.1	4.2	15.27	5.28	5.75	4.37
Merged-chr14-64876792-3	chr14	64876291	64877291	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	Lx5c|LINE|L1	73066.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	42.33	27.65	38.85	31.71	18.19	29.74	22.18	21.22	28.73
Merged-chr12-82326663-3	chr12	82326163	82327163	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	15314.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	34.9	40.09	34.22	24.96	17.26	14.47	19.01	22.99	6.25
Merged-chr7-30878161-3	chr7	30877671	30878671	+	950.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001043317, intron 3 of 15)	PB1D7|SINE|Alu	857.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	59.49	37.32	22.2	51.95	66.24	60.28	85.55	36.7	55.58
Merged-chr4-36289340-2	chr4	36288863	36289863	+	950.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	356090.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	2.86	8.75	11.1	14.17	9.8	15.27	14.79	8.84	11.24
Merged-chr2-31446230-3	chr2	31445714	31446714	+	950.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	21.17	17.97	20.35	13.49	6.53	7.23	13.73	10.61	3.75
Merged-chr9-45095319-2	chr9	45094820	45095820	+	950.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	intron (NM_001005421, intron 6 of 10)	16137.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	129.86	133.63	130.42	132.92	113.83	143.88	6.34	6.19	9.99
Merged-chr9-3022181-3	chr9	3021684	3022684	+	950.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	16559.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	38.33	221.64	38.85	41.83	241.65	29.74	91.89	110.54	27.48
Merged-chr5-62765891-3	chr5	62765385	62766385	+	950.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	CpG	292.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	126.42	103.68	82.32	136.97	104.96	106.1	128.85	111.43	52.46
Merged-chr3-83947680-3	chr3	83947179	83948179	+	950.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 7 of 34)	intron (NM_172681, intron 7 of 34)	92482.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	10.87	5.99	7.4	14.17	8.86	0.0	9.51	0.88	2.5
Merged-chr8-105269779-3	chr8	105269288	105270288	+	950.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256044)	promoter-TSS (NM_001256044)	-13.0	NM_011939	26386.0	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	10.3	3.23	3.7	12.14	4.2	6.43	7.39	4.42	2.5
Merged-chr2-32083756-3	chr2	32083259	32084259	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175511)	promoter-TSS (NM_175511)	-54.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	125.28	81.56	98.97	103.23	94.7	119.76	144.7	159.62	69.32
Merged-chr18-5142680-3	chr18	5142190	5143190	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23041.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	14.3	13.36	16.65	32.39	10.26	31.35	28.52	13.71	12.49
Merged-chr12-100053385-3	chr12	100052890	100053890	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	-58941.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	46.34	32.72	27.75	109.98	64.38	66.71	57.03	45.54	33.1
Merged-chr18-73502115-3	chr18	73501611	73502611	+	950.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-70594.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	10.87	12.9	6.47	6.07	9.8	11.25	13.73	9.29	8.12
Merged-chr2-128428267-3	chr2	128427750	128428750	+	950.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	1101.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	232.83	206.89	124.87	166.66	188.94	136.64	224.97	238.33	113.66
Merged-chr7-126475312-6	chr7	126474796	126475796	+	950.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289541)	promoter-TSS (NM_001289541)	-166.0	NM_011363	20399.0	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	96.68	88.47	76.77	107.95	76.04	96.45	115.12	89.76	59.95
Merged-chr3-87488103-3	chr3	87487597	87488597	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	intron (NM_001113238, intron 11 of 11)	-37481.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	17.16	16.59	14.8	18.89	14.93	6.43	36.97	43.77	31.85
Merged-chr1-160882203-2	chr1	160881706	160882706	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24205.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	8.01	5.99	7.4	6.75	9.33	4.82	4.22	2.65	7.49
Merged-chr12-102158836-1	chr12	102158336	102159336	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	30109.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	4.0	4.61	3.7	5.4	5.6	11.25	7.39	3.98	1.25
Merged-chr4-36094345-1	chr4	36093845	36094845	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165999, intron 5 of 7)	intron (NM_001165999, intron 5 of 7)	-249141.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	4.0	0.92	3.7	1.35	4.2	9.65	3.17	4.86	9.99
Merged-chr2-142766253-1	chr2	142765753	142766753	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	135211.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	7.44	10.6	16.65	11.47	9.33	5.63	7.39	5.75	2.5
Merged-chr1-153918690-3	chr1	153918194	153919194	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18765.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	21.74	17.05	32.37	12.14	8.4	13.66	25.35	9.73	16.86
Merged-chr6-112759090-3	chr6	112758582	112759582	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 11 of 21)	intron (NM_080448, intron 11 of 21)	-62412.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	13.73	16.13	18.5	14.84	14.0	14.47	10.56	3.98	8.12
Merged-chr5-24604946-3	chr5	24604428	24605428	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2926.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	4.0	5.07	6.47	9.45	0.47	12.86	6.34	1.33	3.75
Merged-chr11-3170172-2	chr11	3169681	3170681	+	950.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	MTC|LTR|ERVL-MaLR	23282.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	56.06	67.27	87.87	47.9	59.25	65.11	1.06	0.0	130.53
Merged-chr13-46521726-1	chr13	46521226	46522226	+	950.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026056, intron 1 of 12)	L1MA5|LINE|L1	19823.0	NM_026056	67252.0	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.57	4.15	0.0	3.37	5.13	4.82	3.17	1.77	1.25
Merged-chr2-132109615-3	chr2	132109111	132110111	+	949.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	35497.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	109.26	106.9	100.82	109.3	98.43	86.01	120.41	143.7	53.08
Merged-chr13-37890354-3	chr13	37889848	37890848	+	949.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 2 of 9)	intron (NM_001039188, intron 2 of 9)	1477.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	25.17	24.88	14.8	28.34	27.06	22.51	34.85	19.01	24.98
Merged-chr3-10025973-3	chr3	10025473	10026473	+	949.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13388.0	NM_001272098	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	11.44	3.69	7.4	10.12	7.93	1.61	13.73	18.57	17.49
Merged-chr2-160157292-3	chr2	160156767	160157767	+	949.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140614.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	37.76	23.5	14.8	34.41	24.26	40.99	24.29	13.27	18.74
Merged-chr2-167300229-4	chr2	167299792	167300792	+	949.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019835, exon 9 of 9)	3' UTR (NM_019835, exon 9 of 9)	48886.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	46.91	39.63	27.75	80.97	63.45	58.68	41.19	38.03	13.74
Merged-chr10-4394151-2	chr10	4393602	4394602	+	949.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-5994.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	25.74	39.17	15.72	17.54	23.79	24.92	27.46	20.34	16.86
Merged-chr7-24460001-2	chr7	24459508	24460508	+	949.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2475.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	3.43	2.3	6.47	8.77	5.13	8.04	3.17	5.75	6.25
Merged-chr1-170897151-3	chr1	170896662	170897662	+	949.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11622.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	68.07	58.06	53.65	99.18	78.84	104.49	76.05	118.94	79.94
Merged-chr10-93946094-2	chr10	93945610	93946610	+	949.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17753.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	11.44	15.67	5.55	10.12	14.0	4.82	166.88	144.15	72.45
Merged-chr3-36318799-3	chr3	36318293	36319293	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-96518.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	11.44	11.06	3.7	4.72	4.67	3.22	8.45	7.52	3.75
Merged-chr10-56912896-1	chr10	56912396	56913396	+	949.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	480915.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	11.44	1.84	4.62	2.02	1.4	12.86	8.45	7.52	1.25
Merged-chr4-43010338-3	chr4	43009745	43010745	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163233)	promoter-TSS (NM_001163233)	56.0	NM_001163233	60534.0	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	24.6	29.49	11.1	33.06	31.26	30.54	27.46	26.09	29.98
Merged-chr2-19578819-1	chr2	19578319	19579319	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-24909.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	50.34	39.17	34.22	3.37	1.4	1.61	6.34	3.54	3.12
Merged-chr7-16895231-3	chr7	16894724	16895724	+	949.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010320, intron 3 of 3)	CpG	3438.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	2.86	1.84	3.7	4.72	0.47	0.0	5.28	1.33	1.87
Merged-chr17-80727643-3	chr17	80727194	80728194	+	949.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	CpG	331.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	50.91	30.41	65.67	73.54	47.12	41.8	57.03	33.16	34.35
Merged-chr17-29362149-3	chr17	29361641	29362641	+	949.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013710, intron 1 of 15)	intron (NM_013710, intron 1 of 15)	1227.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	46.91	31.79	30.52	31.71	28.46	47.42	38.02	37.58	33.72
Merged-chr3-133094507-3	chr3	133093997	133094997	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2458.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	20.02	23.04	3.7	16.87	17.73	11.25	8.45	9.29	11.24
Merged-chr14-64627348-3	chr14	64626843	64627843	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-25188.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	21.74	13.36	7.4	29.69	18.66	20.09	10.56	6.19	2.5
Merged-chr8-90833170-3	chr8	90832679	90833679	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	4344.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	43.48	35.94	59.2	23.62	21.93	18.49	58.09	47.31	31.23
Merged-chr14-25530564-3	chr14	25530069	25531069	+	949.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-3870.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	30.89	12.44	6.47	17.54	13.53	12.06	7.39	5.31	6.87
Merged-chr4-125131516-5	chr4	125131051	125132051	+	949.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3670.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	21.17	5.99	16.65	35.76	21.93	9.65	17.96	11.94	2.5
Merged-chr2-113449482-3	chr2	113448974	113449974	+	949.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	8410.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	139.01	152.06	100.82	159.91	167.01	148.7	95.06	115.41	83.69
Merged-chr1-64621463-3	chr1	64620944	64621944	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger5b|DNA|TcMar-Tigger	-4276.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	22.31	26.26	14.8	18.22	11.66	10.45	22.18	17.69	12.49
Merged-chr5-148400333-3	chr5	148399846	148400846	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007513)	promoter-TSS (NM_007513)	-442.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	17.73	18.89	7.4	16.19	12.6	4.02	22.18	16.36	12.49
Merged-chr3-127793310-3	chr3	127792807	127793807	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	2650.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	149.31	157.59	96.2	120.1	111.96	86.01	166.88	249.38	112.42
Merged-chr15-67173307-3	chr15	67172816	67173816	+	949.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	MER44A|DNA|TcMar-Tigger	3566.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	151.59	163.58	100.82	128.87	92.37	90.83	98.23	116.29	61.83
Merged-chr10-54076451-5	chr10	54075970	54076970	+	949.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008548)	promoter-TSS (NM_008548)	548.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	109.26	135.93	29.6	102.56	87.7	57.87	92.94	95.07	47.46
Merged-chr19-58202829-3	chr19	58202330	58203330	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93374.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	8.58	8.29	0.0	4.72	2.8	1.61	5.28	0.88	3.75
Merged-chr17-26237189-3	chr17	26236705	26237705	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	7037.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	144.73	157.13	88.8	226.03	162.81	159.95	216.52	285.2	79.94
Merged-chr6-128201555-2	chr6	128201059	128202059	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17756.0	NR_077223	330427.0	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	76.08	99.07	57.35	85.69	85.84	86.01	9.51	8.84	2.5
Merged-chr9-86478585-3	chr9	86478084	86479084	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	L2|LINE|L2	11430.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	92.67	102.29	54.57	93.79	59.25	65.11	77.1	95.51	68.07
Merged-chr11-105466961-3	chr11	105466462	105467462	+	949.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10227.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	54.92	51.61	38.85	59.38	35.45	49.83	52.81	40.24	24.36
Merged-chr15-78753763-1	chr15	78753263	78754263	+	949.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	19682.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	12.01	6.91	12.02	25.64	21.93	27.33	3.17	4.42	3.75
Merged-chr2-163744849-1	chr2	163744349	163745349	+	949.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	5390.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	25.74	14.75	15.72	21.59	11.66	22.51	19.01	16.8	4.37
Merged-chr8-76897161-2	chr8	76896669	76897669	+	949.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	intron (NR_028579, intron 1 of 1)	3452.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	4.58	8.29	5.55	11.47	14.93	9.65	16.9	6.19	2.5
Merged-chr2-117378465-3	chr2	117377978	117378978	+	949.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-35601.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	26.89	20.74	16.65	20.24	10.26	8.04	11.62	11.94	12.49
Merged-chr3-153968775-2	chr3	153968283	153969283	+	949.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4653.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	1.72	0.92	1.85	8.77	1.87	0.0	2.11	1.33	2.5
Merged-chr6-116123031-3	chr6	116122514	116123514	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	70360.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	86.95	100.91	61.97	105.26	75.11	59.48	53.87	75.17	41.22
Merged-chr8-108847195-3	chr8	108846647	108847647	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89713.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	23.45	15.21	23.12	23.62	16.79	12.06	31.69	25.2	29.98
Merged-chr12-73659939-3	chr12	73659426	73660426	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	75130.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	19.45	17.05	9.25	41.16	31.26	43.4	20.07	14.15	11.87
Merged-chr19-45749506-3	chr19	45748990	45749990	+	949.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008723)	promoter-TSS (NM_008723)	73.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	13.16	17.97	14.8	20.24	13.53	17.68	22.18	20.78	8.12
Merged-chr3-105862020-4	chr3	105861507	105862507	+	949.6041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8851.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	37.76	37.32	71.22	48.58	39.19	45.01	47.53	41.56	42.47
Merged-chr3-81107024-2	chr3	81106505	81107505	+	949.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	70589.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	24.03	20.27	35.15	63.42	58.31	61.09	44.36	46.43	40.59
Merged-chr2-152789683-3	chr2	152789215	152790215	+	949.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	35542.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	56.63	54.83	53.65	38.46	32.66	69.13	58.09	51.29	38.72
Merged-chr1-14577117-3	chr1	14576623	14577623	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178843.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	5.15	8.29	15.72	10.8	7.46	8.04	12.67	7.52	9.99
Merged-chr19-5568371-3	chr19	5567805	5568805	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033448, exon 1 of 2)	5' UTR (NM_001033448, exon 1 of 2)	281.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	249.99	215.65	187.77	301.6	232.79	215.42	277.78	300.23	143.64
Merged-chr10-80151898-3	chr10	80151392	80152392	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2210.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	66.36	40.55	54.57	56.68	48.52	53.05	98.23	76.94	44.34
Merged-chr15-99723316-3	chr15	99722810	99723810	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010271, exon 8 of 8)	3' UTR (NM_010271, exon 8 of 8)	1164.0	NR_155353	102638434.0	Mm.364438	NR_155353		Gm16537	-	predicted gene 16537	ncRNA	114.98	133.63	96.2	103.23	93.3	77.16	125.69	125.58	81.81
Merged-chr10-93083448-3	chr10	93082954	93083954	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1858.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	6.86	6.45	2.77	5.4	4.67	3.22	13.73	11.94	11.24
Merged-chr2-52872829-3	chr2	52872324	52873324	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	14956.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	30.89	41.01	23.12	45.88	31.26	49.83	52.81	46.43	26.23
Merged-chr6-113680218-3	chr6	113679732	113680732	+	949.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 8 of 11)	intron (NM_001113553, intron 8 of 11)	-16818.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	62.93	82.48	74.0	94.46	75.57	88.42	74.99	81.8	58.08
Merged-chr18-54853232-3	chr18	54852735	54853735	+	949.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136945.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	29.75	23.04	13.87	44.53	32.66	16.88	22.18	20.78	19.36
Merged-chr2-117390313-3	chr2	117389742	117390742	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47365.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	25.74	16.59	12.95	27.66	18.66	7.23	19.01	19.01	9.37
Merged-chr10-44634903-3	chr10	44634387	44635387	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176139.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	97.25	125.79	89.72	119.43	127.82	136.64	107.73	110.1	113.04
Merged-chr3-148990056-1	chr3	148989556	148990556	+	949.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-35421.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	10.87	6.45	9.25	18.89	2.33	8.84	4.22	1.77	0.0
Merged-chr8-8704972-3	chr8	8704485	8705485	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-14448.0	NM_176849	234023.0	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	5.72	8.75	18.5	12.14	7.0	9.65	15.84	5.31	11.24
Merged-chr4-141065310-3	chr4	141064816	141065816	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4771.0	NM_001145958	230872.0	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	7.44	3.69	13.87	6.75	3.73	6.43	9.51	0.88	0.0
Merged-chr6-5256260-3	chr6	5255730	5256730	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173006)	promoter-TSS (NM_173006)	3.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	11.44	21.66	27.75	20.24	28.92	23.31	25.35	16.36	24.98
Merged-chr9-96393956-2	chr9	96393412	96394412	+	949.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-29481.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	65.21	77.87	64.75	69.5	82.11	83.59	146.81	146.36	99.3
Merged-chr6-97452414-3	chr6	97451887	97452887	+	949.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	6899.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	95.53	90.77	71.22	109.98	64.38	91.63	129.91	88.88	79.32
Merged-chr17-45686975-3	chr17	45686495	45687495	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198167)	promoter-TSS (NM_198167)	646.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	242.55	156.67	139.67	151.14	96.1	88.42	180.61	174.66	74.94
Merged-chr3-79852939-3	chr3	79852437	79853437	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-10275.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	11.44	5.99	1.85	13.49	6.06	0.0	6.34	1.77	1.87
Merged-chr2-30966982-3	chr2	30966506	30967506	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144884, intron 2 of 4)	intron (NM_144884, intron 2 of 4)	912.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	188.78	197.22	185.92	156.53	162.34	169.6	257.71	274.59	139.27
Merged-chr7-31158754-3	chr7	31158274	31159274	+	949.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3584.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	13.73	20.74	12.02	20.24	24.72	24.11	17.96	14.15	15.61
Merged-chr4-129060124-3	chr4	129059632	129060632	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	1861.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	85.81	100.91	61.05	70.17	42.92	38.58	82.38	98.6	58.71
Merged-chr2-155133509-3	chr2	155132999	155133999	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008395)	promoter-TSS (NM_008395)	18.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	213.95	159.89	160.02	204.44	132.02	154.33	226.02	151.22	101.17
Merged-chr11-62280790-3	chr11	62280271	62281271	+	949.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029704)	promoter-TSS (NM_029704)	624.0	NM_027198	69747.0	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	116.7	129.48	95.27	143.04	108.7	77.97	119.35	154.32	79.32
Merged-chr14-17878613-3	chr14	17878118	17879118	+	949.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-103026.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	44.62	24.88	36.07	29.01	25.19	49.03	51.75	20.34	17.49
Merged-chr11-83541155-3	chr11	83540641	83541641	+	949.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10623.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	49.2	28.11	55.5	60.72	68.11	79.58	58.09	73.84	47.46
Merged-chr5-43180624-3	chr5	43180115	43181115	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-52848.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	17.73	23.5	37.92	27.66	47.58	42.6	43.3	31.39	12.49
Merged-chr17-71143442-3	chr17	71142915	71143915	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-40117.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	22.31	14.28	17.57	37.78	20.99	31.35	21.12	30.07	16.86
Merged-chr10-121591237-3	chr10	121590743	121591743	+	949.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 24 of 24)	MTD|LTR|ERVL-MaLR	-4449.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	17.16	11.98	13.87	30.36	17.26	31.35	152.09	180.85	78.69
Merged-chr12-52624861-3	chr12	52624356	52625356	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	14.87	11.52	12.02	9.45	8.4	4.02	12.67	17.69	14.99
Merged-chr5-149221615-3	chr5	149221119	149222119	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37059.0	NM_001359957	231915.0	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	19.45	16.59	25.9	21.59	16.79	13.66	31.69	20.78	44.97
Merged-chr3-122638850-3	chr3	122638348	122639348	+	949.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19134.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	1.72	1.38	5.55	4.72	1.87	1.61	4.22	1.77	5.0
Merged-chr11-62494937-3	chr11	62494447	62495447	+	949.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039536, intron 2 of 6)	intron (NM_001039536, intron 2 of 6)	36487.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	9.72	9.68	9.25	16.87	6.06	8.84	26.4	17.69	14.99
Merged-chr11-102408040-2	chr11	102407547	102408547	+	949.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026542)	promoter-TSS (NM_026542)	-530.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	395.29	406.87	321.88	459.48	436.65	303.83	410.86	617.71	198.6
Merged-chr18-56562437-3	chr18	56561910	56562910	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138600)	promoter-TSS (NM_138600)	-112.0	NM_138600	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	10.3	9.68	7.4	22.94	12.13	13.66	20.07	15.03	16.86
Merged-chrX-73782394-3	chrX	73781893	73782893	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008323, intron 2 of 12)	intron (NM_008323, intron 2 of 12)	4504.0	NM_008323	15929.0	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	28.03	25.34	29.6	24.29	18.19	39.39	34.85	44.66	23.11
Merged-chr18-57029852-1	chr18	57029352	57030352	+	949.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54473.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	9.15	6.91	0.0	7.42	7.93	2.41	3.17	1.77	6.25
Merged-chr15-58133911-3	chr15	58133413	58134413	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027435, intron 1 of 27)	intron (NM_027435, intron 1 of 27)	1169.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	102.97	148.83	67.52	137.64	176.34	89.22	124.63	215.78	88.06
Merged-chr2-128338718-3	chr2	128338221	128339221	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	90630.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	109.26	106.9	110.99	254.37	252.38	215.42	184.83	226.83	86.18
Merged-chr9-86573143-3	chr9	86572633	86573633	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027100, intron 2 of 2)	B3|SINE|B2	1080.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	5.72	7.37	5.55	8.77	4.2	4.82	6.34	4.42	5.0
Merged-chr6-40576008-3	chr6	40575524	40576524	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021364, exon 6 of 6)	3' UTR (NM_021364, exon 6 of 6)	4636.0	NM_146383	258381.0	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	76.66	61.75	48.1	53.3	47.58	81.99	49.64	55.71	51.21
Merged-chr15-88743558-3	chr15	88743060	88744060	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-8151.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	23.45	20.27	20.35	18.89	17.26	24.11	17.96	18.57	24.98
Merged-chr19-46306149-3	chr19	46305701	46306701	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152247)	promoter-TSS (NR_152247)	271.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	184.77	86.63	79.55	172.05	51.78	101.28	135.19	115.41	71.82
Merged-chr5-21218088-3	chr5	21217575	21218575	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	Tigger17a|DNA|TcMar-Tigger	31808.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	14.87	18.89	15.72	17.54	17.73	24.92	22.18	11.94	4.37
Merged-chr17-6948530-3	chr17	6948009	6949009	+	949.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083945)	promoter-TSS (NM_001083945)	-153.0	NM_001083945	100037282.0	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	8.58	8.75	16.65	16.19	12.6	8.04	45.42	18.57	17.49
Merged-chr3-36614448-1	chr3	36613948	36614948	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1059.0	NM_027810	71492.0	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	4.58	3.69	1.85	4.05	1.87	2.41	3.17	2.21	2.5
Merged-chr3-94786516-3	chr3	94786012	94787012	+	949.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037711)	promoter-TSS (NM_001037711)	3.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	5.15	3.23	3.7	2.7	5.6	3.22	2.11	1.77	5.0
Merged-chr9-96705760-3	chr9	96705265	96706265	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	13680.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	92.1	94.92	51.8	109.98	113.83	71.54	65.48	71.19	26.85
Merged-chr2-31068983-3	chr2	31068485	31069485	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	27515.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	96.11	90.31	66.6	116.73	107.3	110.92	116.18	92.41	78.07
Merged-chr14-104523687-3	chr14	104523179	104524179	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1013.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	16.59	7.83	5.55	14.17	11.2	18.49	17.96	17.69	9.99
Merged-chr1-46894603-3	chr1	46894102	46895102	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	31174.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	8.58	7.83	15.72	9.45	7.0	3.22	10.56	5.75	1.87
Merged-chr4-130917765-3	chr4	130917270	130918270	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	4436.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	117.84	134.55	136.89	124.82	95.63	127.0	154.2	130.0	89.93
Merged-chr12-84389105-3	chr12	84388617	84389617	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001026214, intron 6 of 15)	intron (NM_001026214, intron 6 of 15)	11817.0	NM_001286058	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	16.59	24.42	21.27	38.46	26.12	24.92	25.35	22.99	10.62
Merged-chr11-103354232-3	chr11	103353729	103354729	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 3 of 17)	intron (NM_001205236, intron 3 of 17)	9463.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	63.5	34.56	18.5	62.75	30.79	22.51	44.36	38.03	22.48
Merged-chr5-121249855-3	chr5	121249345	121250345	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	29626.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	84.66	77.41	73.07	103.23	45.72	65.11	98.23	94.18	58.08
Merged-chr8-107269792-3	chr8	107269290	107270290	+	949.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	13626.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	18.31	11.06	9.25	26.31	14.93	22.51	16.9	12.38	13.74
Merged-chr19-10869742-3	chr19	10869200	10870200	+	949.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133804)	promoter-TSS (NM_133804)	79.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	5.72	5.07	3.7	12.82	7.93	8.84	5.28	3.54	5.0
Merged-chr5-32940884-3	chr5	32940385	32941385	+	949.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025426, intron 28 of 42)	intron (NM_001025426, intron 28 of 42)	77164.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	52.06	55.29	31.45	49.93	37.79	30.54	64.43	49.08	62.45
Merged-chr4-3692986-2	chr4	3692497	3693497	+	949.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	ORR1G|LTR|ERVL-MaLR	14876.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	42.33	33.18	37.0	35.76	33.59	37.78	89.78	76.49	50.59
Merged-chr7-101029576-3	chr7	101029071	101030071	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17518.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	26.31	19.81	8.32	31.71	19.13	18.49	15.84	6.63	8.74
Merged-chr15-99088453-3	chr15	99087952	99088952	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024702)	promoter-TSS (NM_001024702)	-724.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	11.44	6.45	0.0	3.37	1.87	3.22	0.0	0.44	0.0
Merged-chr5-24878054-3	chr5	24877547	24878547	+	949.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 8 of 15)	intron (NM_145401, intron 8 of 15)	-24522.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	10.3	13.36	7.4	10.12	7.93	3.22	5.28	4.86	13.74
Merged-chr9-21136108-3	chr9	21135597	21136597	+	949.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4822.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	263.14	168.19	151.69	159.23	90.5	120.57	201.73	214.89	96.18
Merged-chr4-40971732-6	chr4	40971215	40972215	+	949.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290448, intron 1 of 15)	intron (NM_001290448, intron 1 of 15)	772.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	166.47	169.57	150.77	148.44	143.68	138.25	180.61	127.79	114.91
Merged-chr18-81572201-3	chr18	81571689	81572689	+	949.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	419891.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	15.45	12.44	14.8	13.49	15.86	18.49	39.08	39.35	21.86
Merged-chr16-44243444-2	chr16	44242946	44243946	+	949.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	70049.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	17.16	9.22	3.7	18.89	20.99	12.06	32.74	40.24	31.23
Merged-chr2-60176223-3	chr2	60175656	60176656	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33780.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	11.44	13.36	9.25	29.69	17.73	22.51	13.73	19.01	11.24
Merged-chr4-66857185-3	chr4	66856685	66857685	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29634.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	16.02	8.75	3.7	30.36	17.26	26.53	10.56	8.84	7.49
Merged-chr8-56550737-3	chr8	56550254	56551254	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015791)	promoter-TSS (NM_015791)	-188.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	120.13	124.41	110.07	134.94	151.62	102.08	201.73	214.45	103.67
Merged-chr17-33992037-3	chr17	33991597	33992597	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	8236.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	9.15	2.3	1.85	8.1	5.13	15.27	4.22	0.88	5.0
Merged-chr3-79120543-3	chr3	79120038	79121038	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24349.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	90.38	87.09	77.7	28.34	16.79	35.37	57.03	45.1	19.36
Merged-chr1-80454190-3	chr1	80453695	80454695	+	949.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	ORR1E|LTR|ERVL-MaLR	8263.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	21.74	23.04	21.27	23.62	7.46	20.09	16.9	20.34	23.11
Merged-chr19-53264009-2	chr19	53263508	53264508	+	949.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8803.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	5.72	1.84	1.85	4.72	3.73	2.41	4.22	0.0	3.12
Merged-chr5-135187709-2	chr5	135187248	135188248	+	949.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011714, exon 1 of 19)	exon (NM_011714, exon 1 of 19)	425.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	234.54	253.43	271.94	173.4	198.73	193.71	242.92	204.28	186.73
Merged-chr14-30713923-3	chr14	30713437	30714437	+	949.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019460)	promoter-TSS (NM_019460)	-912.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	12.01	17.51	22.2	17.54	17.73	11.25	20.07	22.55	8.12
Merged-chr15-89427370-3	chr15	89426870	89427870	+	949.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_004843, exon 8 of 27)	non-coding (NR_004843, exon 8 of 27)	-1508.0	NM_009948	12895.0	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	25.74	24.88	14.8	16.87	10.26	38.58	15.84	7.52	12.49
Merged-chr17-35868398-3	chr17	35867900	35868900	+	949.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1785.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	51.48	59.44	79.55	33.74	26.12	66.71	50.7	52.18	67.45
Merged-chr10-97313787-3	chr10	97313281	97314281	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109697.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	21.17	43.31	11.1	45.88	42.45	40.19	60.2	49.52	38.72
Merged-chr7-30588386-3	chr7	30587866	30588866	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290573, exon 1 of 37)	exon (NM_001290573, exon 1 of 37)	360.0	NM_001290573	75410.0	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	87.52	65.43	90.65	60.05	45.25	84.4	109.84	50.85	74.94
Merged-chr4-141722182-3	chr4	141721680	141722680	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	1239.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	106.4	115.66	76.77	71.52	79.77	72.34	196.45	223.29	94.3
Merged-chrX-140598803-3	chrX	140598328	140599328	+	949.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 1 of 3)	CpG	1694.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	40.04	13.82	20.35	45.21	22.39	33.76	42.25	12.38	12.49
Merged-chr10-41923625-4	chr10	41923123	41924123	+	949.107178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 15 of 17)	B1_Mus2|SINE|Alu	36184.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	81.23	100.91	30.52	83.66	98.9	81.99	97.17	121.6	68.07
Merged-chr14-64834013-4	chr14	64833457	64834457	+	949.1041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115900.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	28.03	32.25	27.75	58.03	44.32	50.64	30.63	26.97	28.1
Merged-chr8-83739423-3	chr8	83738982	83739982	+	949.0793460000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	1829.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	382.13	437.74	236.79	292.15	207.6	145.49	344.32	439.07	177.99
Merged-chr9-123941560-3	chr9	123941070	123942070	+	949.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27122.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	101.83	100.91	110.99	98.51	70.44	109.32	67.6	55.27	65.58
Merged-chr11-95849957-3	chr11	95849449	95850449	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	6704.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	117.84	98.61	57.35	141.02	74.17	102.88	140.47	146.8	81.81
Merged-chr11-72795676-3	chr11	72795185	72796185	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045536)	promoter-TSS (NM_001045536)	154.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	179.62	171.41	155.39	146.41	135.75	133.43	188.0	187.04	85.56
Merged-chr11-115564317-3	chr11	115563848	115564848	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-96.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	68.65	67.27	18.5	72.87	61.58	41.8	81.33	55.27	22.48
Merged-chr5-101864168-3	chr5	101863684	101864684	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 50 of 66)	intron (NM_172882, intron 50 of 66)	99054.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	13.73	7.83	5.55	9.45	5.13	10.45	14.79	17.24	7.49
Merged-chr4-10968042-3	chr4	10967519	10968519	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39600.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	14.3	7.83	9.25	5.4	3.73	9.65	11.62	5.31	19.98
Merged-chr2-29053123-3	chr2	29052612	29053612	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	1954.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	15.45	11.98	27.75	19.57	11.2	21.7	27.46	21.67	16.24
Merged-chr2-160211906-3	chr2	160211408	160212408	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115586.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	112.12	96.76	63.82	130.9	82.57	106.1	123.57	98.6	74.94
Merged-chr9-109923996-3	chr9	109923514	109924514	+	949.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7760.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	25.74	20.27	7.4	21.59	13.53	14.47	42.25	34.93	11.24
Merged-chr17-45627010-3	chr17	45626518	45627518	+	949.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24916.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	38.33	29.03	18.5	26.31	14.93	32.15	40.14	38.47	18.74
Merged-chr7-116231406-1	chr7	116230906	116231906	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	6370.0	NM_001305186	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	5.15	2.3	6.47	3.37	5.6	3.22	1.06	4.42	2.5
Merged-chr14-120387526-1	chr14	120387026	120388026	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 4 of 8)	intron (NM_001360376, intron 4 of 8)	81074.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.01	9.68	12.95	20.24	15.86	26.53	16.9	7.52	9.99
Merged-chr4-88544054-3	chr4	88543561	88544561	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14184.0	NM_206870	242517.0	Mm.377261	NM_206870	ENSMUSG00000096011	Ifna15	Gm12597|Ifnaa|MuIFN-alpha-A	interferon alpha 15	protein-coding	3.43	5.99	7.4	7.42	4.67	0.0	3.17	1.33	3.75
Merged-chr12-104471737-3	chr12	104471201	104472201	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010351, intron 2 of 2)	intron (NM_010351, intron 2 of 2)	1535.0	NM_010351	14836.0	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	9.15	7.83	0.92	10.12	1.87	8.04	11.62	5.75	2.5
Merged-chr17-71474801-1	chr17	71474301	71475301	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028887, intron 1 of 47)	CpG	542.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	148.16	118.42	108.22	99.86	91.44	112.53	182.72	149.45	131.78
Merged-chr2-181691822-3	chr2	181691324	181692324	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291205)	promoter-TSS (NM_001291205)	-7.0	NM_001291205	56470.0	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	34.9	37.78	32.37	18.89	16.33	25.72	27.46	27.86	29.35
Merged-chr14-46742926-3	chr14	46742439	46743439	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-17602.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	28.03	33.64	30.52	39.81	34.52	46.62	13.73	12.38	17.49
Merged-chr12-106683843-1	chr12	106683343	106684343	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32481.0	NR_015512	71033.0	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.0	1.38	1.85	3.37	1.87	1.61	0.0	1.77	1.25
Merged-chr18-57598512-3	chr18	57598007	57599007	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	ORR1E|LTR|ERVL-MaLR	40078.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	31.46	36.4	37.0	24.29	24.26	40.99	26.4	33.6	23.11
Merged-chr19-12501072-1	chr19	12500572	12501572	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172442, exon 1 of 9)	exon (NM_172442, exon 1 of 9)	924.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	49.2	23.04	14.8	70.17	36.39	26.53	26.4	8.84	5.62
Merged-chr8-46837202-3	chr8	46836706	46837706	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	97461.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	30.32	17.97	7.4	35.76	17.26	18.49	20.07	18.13	21.23
Merged-chr1-153748599-3	chr1	153748033	153749033	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011882)	promoter-TSS (NM_011882)	-893.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	84.09	88.01	37.92	96.48	62.98	39.39	33.8	43.77	26.23
Merged-chr1-172526885-1	chr1	172526385	172527385	+	949.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027972, intron 1 of 11)	MLT1N2|LTR|ERVL-MaLR	5755.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	4.0	5.07	0.92	10.8	9.8	9.65	30.63	25.2	21.23
Merged-chr5-92328209-2	chr5	92327710	92328710	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008599)	promoter-TSS (NM_008599)	-131.0	NM_008599	17329.0	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	3.43	4.15	3.7	4.72	4.2	3.22	1.06	5.31	1.25
Merged-chr2-137869740-1	chr2	137869240	137870240	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-386844.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.29	1.84	5.55	0.67	5.6	8.04	4.22	3.54	0.0
Merged-chr7-116626236-1	chr7	116625736	116626736	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121867.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	1.14	6.91	5.55	9.45	7.93	10.45	17.96	6.63	6.25
Merged-chr10-111507522-1	chr10	111507022	111508022	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	1236.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	12.01	5.53	1.85	11.47	7.46	8.04	4.22	2.65	7.49
Merged-chr3-137880383-3	chr3	137879892	137880892	+	949.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	intron (NM_001033155, intron 1 of 7)	12717.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	72.65	65.89	53.65	94.46	67.18	53.85	73.93	74.28	54.33
Merged-chr1-95653689-1	chr1	95653189	95654189	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009183, exon 3 of 5)	exon (NM_009183, exon 3 of 5)	13905.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.0	4.61	0.0	11.47	3.73	4.82	1.06	0.88	1.25
Merged-chr11-85324086-1	chr11	85323586	85324586	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016910, intron 1 of 5)	intron (NM_016910, intron 1 of 5)	12832.0	NM_016910	53892.0	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	5.72	2.3	14.8	17.54	7.0	16.08	13.73	11.5	3.75
Merged-chr13-95944042-1	chr13	95943542	95944542	+	949.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52120.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.14	5.53	3.7	5.4	3.73	2.41	13.73	3.54	7.49
Merged-chr8-23149617-3	chr8	23149075	23150075	+	948.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001282148)	promoter-TSS (NM_001282148)	10.0	NM_001282148	101056408.0	Mm.475778	NM_001282148		Gm15816	-	predicted gene 15816	protein-coding	8.01	3.69	3.7	6.75	1.87	8.04	3.17	0.88	3.12
Merged-chr14-47186702-3	chr14	47186196	47187196	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008102, intron 1 of 5)	intron (NM_008102, intron 1 of 5)	2717.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	25.17	18.89	0.92	20.24	30.32	36.17	12.67	14.59	12.49
Merged-chr13-41819677-3	chr13	41819176	41820176	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	27812.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	24.6	18.43	22.2	26.99	14.46	22.51	15.84	11.05	11.24
Merged-chr4-32161034-3	chr4	32160522	32161522	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	196915.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	20.02	39.63	41.62	43.86	36.85	64.3	67.6	47.31	36.85
Merged-chr14-52141862-3	chr14	52141368	52142368	+	948.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30965.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	22.88	11.52	6.47	17.54	15.86	7.23	20.07	17.69	9.99
Merged-chr9-113664634-3	chr9	113664137	113665137	+	948.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164678, intron 12 of 17)	intron (NM_001164678, intron 12 of 17)	43622.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	18.31	28.11	24.05	28.34	30.32	32.15	24.29	35.82	31.23
Merged-chr10-63424645-3	chr10	63424135	63425135	+	948.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5463.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	4.58	5.53	1.85	7.42	1.4	4.02	5.28	2.21	2.5
Merged-chr3-109030812-2	chr3	109030317	109031317	+	948.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3210.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.29	4.61	3.7	43.86	31.26	57.07	46.47	35.37	29.98
Merged-chr11-3963807-5	chr11	3963253	3964253	+	948.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022889)	promoter-TSS (NM_022889)	-222.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	181.34	176.48	96.2	217.26	160.01	148.7	190.11	185.27	96.8
Merged-chr4-102801684-3	chr4	102801172	102802172	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	L1MB8|LINE|L1	41537.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	22.31	21.66	11.1	28.34	21.46	12.06	23.24	14.15	17.49
Merged-chr6-82969552-3	chr6	82969062	82970062	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 3 of 9)	L1MCa|LINE|L1	22640.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	17.73	9.68	14.8	27.66	11.66	8.04	21.12	10.17	8.12
Merged-chr1-164074833-3	chr1	164074348	164075348	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	12772.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	21.17	38.71	39.77	29.69	30.32	32.15	65.48	59.69	33.1
Merged-chr8-107294414-3	chr8	107293899	107294899	+	948.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286260, intron 1 of 12)	CpG	929.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	83.52	47.46	89.72	106.61	36.85	62.7	98.23	47.31	44.34
Merged-chr18-38542734-3	chr18	38542237	38543237	+	948.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58531.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	4.0	6.91	7.4	7.42	4.67	3.22	10.56	3.1	3.75
Merged-chr5-150674371-3	chr5	150673808	150674808	+	948.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175310, intron 1 of 34)	CpG	481.0	NM_001346503	100710.0	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	81.23	34.1	43.47	60.72	33.12	61.09	86.61	34.93	35.6
Merged-chr1-87112071-2	chr1	87111526	87112526	+	948.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10420.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	10.3	11.06	3.7	17.54	21.46	9.65	9.51	11.94	9.99
Merged-chr1-53818307-3	chr1	53817866	53818866	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	(GA)n|Simple_repeat|Simple_repeat	-31058.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	101.83	68.66	74.92	141.69	72.78	91.63	113.01	79.15	69.32
Merged-chr17-17896189-3	chr17	17895703	17896703	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8379.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	28.6	31.79	16.65	36.43	12.6	14.47	26.4	14.15	16.24
Merged-chr10-81405676-3	chr10	81405173	81406173	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 7 of 8)	intron (NM_026756, intron 7 of 8)	-3902.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	31.46	28.57	14.8	54.65	33.59	36.17	40.14	44.22	34.97
Merged-chr3-20509391-2	chr3	20508885	20509885	+	948.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142208.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	5.72	2.76	1.85	2.02	3.27	4.82	5.28	1.77	1.25
Merged-chr7-106759004-3	chr7	106758502	106759502	+	948.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_146602	258595.0	Mm.377585	NM_146602	ENSMUSG00000059087	Olfr698	MOR283-3	olfactory receptor 698	protein-coding	22.88	34.1	30.52	12.82	17.26	26.53	24.29	38.03	33.1
Merged-chr6-83034087-3	chr6	83033551	83034551	+	948.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291799)	promoter-TSS (NM_001291799)	-173.0	NM_013586	16950.0	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	227.11	197.68	120.24	228.05	247.72	165.58	230.25	220.64	84.94
Merged-chr6-83323774-3	chr6	83323270	83324270	+	948.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2269.0	NM_145571	232157.0	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	22.88	44.24	36.07	31.71	26.12	32.96	24.29	41.12	42.47
Merged-chr17-84110191-2	chr17	84109692	84110692	+	948.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31532.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	29.17	24.42	17.57	29.01	22.39	35.37	24.29	16.36	10.62
Merged-chr7-110385671-2	chr7	110385157	110386157	+	948.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	163954.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	15.45	60.36	34.22	33.74	51.78	41.8	32.74	54.83	26.85
Merged-chr10-40099475-3	chr10	40098913	40099913	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	L1MC1|LINE|L1	42841.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	40.04	61.75	42.55	44.53	50.85	71.54	68.65	92.86	58.08
Merged-chr5-32133184-3	chr5	32132664	32133664	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3308.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	54.92	27.65	21.27	46.56	28.92	62.7	43.3	27.86	34.97
Merged-chr1-131364591-3	chr1	131364088	131365088	+	948.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-85025.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	24.03	22.58	12.95	39.13	17.26	31.35	19.01	14.59	16.24
Merged-chr11-43767105-3	chr11	43766610	43767610	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19137.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	8.58	7.37	3.7	10.12	7.46	2.41	3.17	5.75	5.0
Merged-chr12-79321083-3	chr12	79320591	79321591	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 5 of 10)	B4A|SINE|B4	23740.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	17.73	10.14	12.02	19.57	3.27	8.04	22.18	12.38	6.25
Merged-chr15-31613917-3	chr15	31613402	31614402	+	948.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	11786.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	28.03	44.7	23.12	37.78	33.12	26.53	49.64	55.27	31.23
Merged-chr2-132029201-3	chr2	132028688	132029688	+	948.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	CpG	800.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	60.07	67.74	84.17	88.39	110.1	99.67	64.43	85.78	67.45
Merged-chr11-116077647-3	chr11	116077179	116078179	+	948.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347642)	TTS (NM_001347642)	282.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	77.23	59.44	73.07	70.85	55.05	68.32	70.76	71.19	29.35
Merged-chr13-20120844-3	chr13	20120327	20121327	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	30320.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	41.76	36.86	29.6	26.99	20.06	25.72	34.85	32.28	37.47
Merged-chr4-84362535-1	chr4	84362035	84363035	+	948.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172870, intron 4 of 5)	intron (NM_172870, intron 4 of 5)	312551.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	3.43	7.83	1.85	6.07	2.8	11.25	6.34	3.54	8.74
Merged-chr14-30405974-3	chr14	30405476	30406476	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-52060.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	60.64	69.12	62.9	66.12	68.58	73.95	83.44	91.97	56.21
Merged-chr11-73160315-3	chr11	73159804	73160804	+	948.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033321)	promoter-TSS (NM_033321)	-226.0	NM_033321	94045.0	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	5.15	8.29	3.7	9.45	2.33	1.61	12.67	2.21	3.75
Merged-chr10-125272179-2	chr10	125271685	125272685	+	948.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	36631.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	50.34	70.5	54.57	41.83	51.78	87.61	53.87	35.37	35.6
Merged-chr2-102532304-2	chr2	102531819	102532819	+	948.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17702.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	6.86	6.45	0.0	0.67	1.87	1.61	11.62	11.94	8.74
Merged-chr2-132289364-3	chr2	132288874	132289874	+	948.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291039, intron 1 of 12)	RLTR17|LTR|ERVK	3435.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	10.87	13.36	10.17	8.77	8.4	21.7	15.84	8.84	8.12
Merged-chr5-77460484-3	chr5	77459964	77460964	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5024.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	16.02	19.81	10.17	28.34	13.53	12.06	16.9	20.78	11.24
Merged-chr7-68157628-3	chr7	68157126	68158126	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	106607.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	36.04	55.29	38.85	18.89	20.53	10.45	16.9	21.67	21.23
Merged-chr11-29809539-3	chr11	29809040	29810040	+	948.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	16128.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	159.03	199.98	124.87	221.98	241.65	178.44	297.84	344.89	128.65
Merged-chr6-125096891-3	chr6	125096427	125097427	+	948.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106012)	promoter-TSS (NR_106012)	-97.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	99.54	81.56	104.52	105.93	73.71	98.87	65.48	65.0	54.96
Merged-chr12-37255577-3	chr12	37255058	37256058	+	948.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	13919.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	15.45	10.6	7.4	11.47	17.26	8.84	21.12	15.92	8.74
Merged-chr10-122052055-3	chr10	122051577	122052577	+	948.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4762.0	NM_001081037	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	9.15	3.23	1.85	7.42	1.87	8.04	2.11	5.31	8.74
Merged-chr1-36279385-3	chr1	36278929	36279929	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6004.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	8.58	4.61	1.85	4.05	2.33	6.43	4.22	4.86	2.5
Merged-chr2-127341296-3	chr2	127340793	127341793	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291003)	promoter-TSS (NM_001291003)	-343.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	15.45	3.23	0.0	8.1	0.93	1.61	2.11	5.75	1.87
Merged-chr9-118608909-3	chr9	118608407	118609407	+	948.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2198.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	97.82	139.16	105.44	107.95	164.68	141.47	121.46	189.25	88.06
Merged-chr4-43249364-3	chr4	43248879	43249879	+	948.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 24 of 39)	intron (NM_001081413, intron 24 of 39)	-17780.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	71.51	58.52	44.4	58.03	41.05	57.07	11.62	16.8	8.74
Merged-chr11-21569357-5	chr11	21568897	21569897	+	948.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	2537.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	210.52	197.22	119.32	109.98	111.5	98.06	207.01	240.1	119.91
Merged-chr19-4257198-3	chr19	4256680	4257680	+	948.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6698.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	74.37	62.21	63.82	60.72	33.59	38.58	55.98	65.88	43.09
Merged-chr9-75547041-2	chr9	75546531	75547531	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	12626.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	25.74	20.27	14.8	20.92	18.66	17.68	24.29	20.78	14.36
Merged-chr2-166041902-3	chr2	166041409	166042409	+	948.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	49272.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	61.21	53.91	37.0	84.34	55.05	52.25	81.33	63.23	30.6
Merged-chr1-35975846-1	chr1	35975346	35976346	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-92554.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.58	8.29	12.02	20.92	7.93	24.11	20.07	14.15	6.25
Merged-chr17-79955055-3	chr17	79954531	79955531	+	948.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58908.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	9.15	20.27	12.95	4.72	7.0	6.43	15.84	12.38	14.99
Merged-chr11-118275239-2	chr11	118274720	118275720	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033528, intron 9 of 20)	intron (NM_001033528, intron 9 of 20)	15024.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	4.58	1.38	6.47	41.16	14.46	37.78	22.18	17.24	1.25
Merged-chr13-112331428-1	chr13	112330928	112331928	+	948.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	42910.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.15	3.69	6.47	16.19	18.19	13.66	4.22	0.88	9.37
Merged-chr17-28513968-3	chr17	28513479	28514479	+	948.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16882.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	76.66	83.86	61.97	88.39	83.97	124.59	89.78	83.57	72.45
Merged-chr10-118622297-3	chr10	118621798	118622798	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-65773.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	5.15	11.52	5.55	13.49	12.6	16.88	36.97	21.67	17.49
Merged-chr2-122777038-3	chr2	122776551	122777551	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	-4948.0	NM_021507	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	28.6	24.42	39.77	38.46	41.52	36.97	35.91	24.76	24.98
Merged-chr7-102426500-3	chr7	102426017	102427017	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 8 of 11)	intron (NM_009287, intron 8 of 11)	-15178.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	28.6	17.97	22.2	29.69	21.93	32.96	13.73	22.99	18.74
Merged-chr8-117338838-3	chr8	117338319	117339319	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-10351.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	245.41	187.54	131.34	261.79	144.15	157.54	264.05	244.96	131.78
Merged-chr12-69455785-3	chr12	69455287	69456287	+	948.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19763.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	13.16	16.13	20.35	20.24	15.86	23.31	11.62	12.82	5.62
Merged-chr2-127398262-3	chr2	127397762	127398762	+	948.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26937.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	47.48	66.81	36.07	55.33	30.79	43.4	90.83	87.11	50.59
Merged-chr14-121894670-3	chr14	121894168	121895168	+	948.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	-15260.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	51.48	57.6	40.7	40.48	46.65	36.97	58.09	51.73	33.72
Merged-chr10-67629084-3	chr10	67628570	67629570	+	948.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57111.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	42.33	45.16	32.37	51.28	60.18	56.27	64.43	41.56	34.35
Merged-chrX-167175576-3	chrX	167175082	167176082	+	948.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33636.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	29.17	26.73	27.75	31.04	16.33	18.49	27.46	27.86	14.36
Merged-chr2-167377905-3	chr2	167377398	167378398	+	948.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28720.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	96.68	96.3	47.17	162.61	104.5	113.33	122.52	118.5	64.95
Merged-chr15-96640871-3	chr15	96640375	96641375	+	948.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	1087.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	262.57	240.07	110.99	245.6	198.27	101.28	156.32	129.11	77.44
Merged-chr11-75268717-2	chr11	75268225	75269225	+	948.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177708)	TTS (NM_177708)	74732.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	17.16	16.13	12.02	43.86	48.98	72.34	34.85	32.28	15.61
Merged-chr12-3291182-3	chr12	3290694	3291694	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	18775.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	26.89	37.32	37.92	30.36	32.19	21.7	43.3	40.68	24.98
Merged-chr7-101360651-3	chr7	101360168	101361168	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	12599.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	86.38	41.01	45.32	74.89	36.85	35.37	45.42	47.75	12.49
Merged-chr3-97994250-3	chr3	97993735	97994735	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19303.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	101.25	112.43	90.65	161.26	105.43	114.94	115.12	119.83	94.3
Merged-chr6-38949210-3	chr6	38948720	38949720	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	30234.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	127.0	136.39	123.94	141.69	86.3	122.18	113.01	156.09	77.44
Merged-chr18-56708374-3	chr18	56707862	56708862	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010721, exon 1 of 11)	exon (NM_010721, exon 1 of 11)	549.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	60.07	63.59	88.8	82.32	67.64	94.04	121.46	96.39	72.45
Merged-chr1-177981512-3	chr1	177981009	177982009	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-9889.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	10.87	7.37	12.95	30.36	34.99	19.29	24.29	34.93	18.74
Merged-chr8-72317270-3	chr8	72316762	72317762	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1800.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	82.95	54.37	36.07	196.34	145.55	122.98	66.54	70.75	43.72
Merged-chr10-6753581-3	chr10	6753071	6754071	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-5022.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	8.01	7.37	1.85	1.35	6.53	3.22	6.34	3.1	2.5
Merged-chr9-99563876-3	chr9	99563386	99564386	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 1 of 21)	intron (NM_028768, intron 1 of 21)	5013.0	NM_001166138	74125.0	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	7.44	3.23	11.1	12.82	6.53	20.9	17.96	26.53	16.24
Merged-chr14-73445275-1	chr14	73444775	73445775	+	948.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59986.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	222.53	207.35	127.64	209.84	142.29	173.62	171.1	183.06	119.28
Merged-chr15-31615613-3	chr15	31615093	31616093	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	13477.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	37.76	31.33	30.52	29.69	28.46	49.03	76.05	53.94	34.97
Merged-chr19-37370610-3	chr19	37370109	37371109	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-5794.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	99.54	141.46	91.57	118.08	130.62	128.61	295.73	334.72	147.39
Merged-chr10-80826998-3	chr10	80826512	80827512	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301034, intron 1 of 4)	CpG	316.0	NR_027656	100041965.0	Mm.328806	NR_027656		Oaz1-ps	Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	221.96	181.55	199.79	222.66	167.94	180.05	162.65	150.34	90.56
Merged-chr1-172148619-3	chr1	172148118	172149118	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357204, intron 1 of 13)	intron (NM_001357204, intron 1 of 13)	603.0	NM_001357204	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	295.18	369.55	220.14	305.65	362.01	270.07	297.84	340.47	199.85
Merged-chr7-127270486-3	chr7	127270010	127271010	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3549.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	16.02	13.36	8.32	30.36	34.99	47.42	24.29	15.03	18.74
Merged-chr9-102792098-1	chr9	102791598	102792598	+	948.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42822.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	6.86	10.6	5.55	4.72	12.13	8.84	8.45	4.86	7.49
Merged-chr16-91549841-3	chr16	91549316	91550316	+	948.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	intron (NM_008338, intron 1 of 6)	2722.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	110.98	73.73	42.55	136.97	62.98	44.21	144.7	164.93	64.33
Merged-chr3-104794132-3	chr3	104793627	104794627	+	948.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008619)	TTS (NM_008619)	5093.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	60.64	40.55	55.5	54.65	58.31	65.11	77.1	43.77	34.97
Merged-chr9-64105466-3	chr9	64104960	64105960	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	6.29	5.53	0.0	18.89	8.86	10.45	20.07	8.84	6.87
Merged-chrX-7563291-3	chrX	7562801	7563801	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290574, intron 3 of 3)	L2|LINE|L2	-10299.0	NR_029473	78185.0	Mm.160055	NR_029473	ENSMUSG00000039545	Flicr	4930524L23Rik|Ppp1r3fos	Foxp3 regulating long intergenic noncoding RNA	ncRNA	8.58	4.15	3.7	6.75	3.27	4.82	11.62	3.54	2.5
Merged-chr17-6978782-3	chr17	6978295	6979295	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026611).2	promoter-TSS (NM_026611).2	-65.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	10.87	13.82	22.2	17.54	13.06	1.61	67.6	52.18	15.61
Merged-chr16-36711460-3	chr16	36710973	36711973	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	intron (NM_001285788, intron 3 of 7)	17495.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	384.42	383.83	138.74	373.79	456.71	213.81	328.47	422.27	161.13
Merged-chr5-24384656-3	chr5	24384154	24385154	+	948.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008713)	TTS (NM_008713)	7489.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	8.58	4.61	2.77	15.52	6.53	9.65	9.51	4.42	7.49
Merged-chr3-50406123-3	chr3	50405638	50406638	+	948.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 6 of 11)	intron (NM_011990, intron 6 of 11)	37475.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	17.16	14.28	12.95	16.19	8.86	18.49	5.28	4.42	4.37
Merged-chr1-171504128-3	chr1	171503662	171504662	+	948.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019484, exon 1 of 1)	exon (NM_019484, exon 1 of 1)	684.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	220.81	256.66	207.19	206.46	220.19	208.98	265.1	255.13	184.24
Merged-chr4-132963670-3	chr4	132963196	132964196	+	948.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10399.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	27.46	23.04	19.42	33.74	17.73	20.9	26.4	26.97	26.23
Merged-chr19-40707712-3	chr19	40707206	40708206	+	948.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	BGLII_B2|LTR|ERVK	47936.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	102.4	123.49	101.74	119.43	110.1	119.76	106.67	140.61	74.32
Merged-chr6-94509449-3	chr6	94508936	94509936	+	948.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9122.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	60.64	82.48	61.97	69.5	93.3	83.59	34.85	41.56	17.49
Merged-chr19-45984601-3	chr19	45984105	45985105	+	948.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 1 of 25)	MTC|LTR|ERVL-MaLR	-13532.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	24.6	22.58	38.85	18.89	15.86	24.92	32.74	33.16	27.48
Merged-chr11-114683921-3	chr11	114683428	114684428	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	ORR1B2|LTR|ERVL-MaLR	8460.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	106.4	88.93	89.72	118.75	69.98	90.83	136.25	158.3	71.82
Merged-chr10-80320587-3	chr10	80320093	80321093	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-45.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	71.51	67.27	74.0	57.35	58.78	84.4	107.73	95.07	54.33
Merged-chr12-75833620-3	chr12	75833122	75834122	+	948.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	15304.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	13.16	5.53	5.55	8.77	5.6	6.43	9.51	5.31	14.99
Merged-chr1-75188116-2	chr1	75187618	75188618	+	948.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003917, intron 5 of 15)	intron (NM_001003917, intron 5 of 15)	3892.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	4.0	3.69	1.85	6.75	3.73	10.45	6.34	3.54	3.75
Merged-chr19-46478967-3	chr19	46478467	46479467	+	948.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-22681.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	45.19	35.02	26.82	60.05	57.38	86.01	46.47	33.16	21.86
Merged-chr16-35768572-3	chr16	35768071	35769071	+	948.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	785.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	232.83	276.01	129.49	283.38	277.57	227.47	185.89	226.83	119.28
Merged-chr6-149174151-3	chr6	149173645	149174645	+	948.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153963, intron 1 of 4)	intron (NR_153963, intron 1 of 4)	14567.0	NM_001356344	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	16.59	13.82	17.57	23.62	8.4	33.76	13.73	5.75	22.48
Merged-chr17-36031964-3	chr17	36031446	36032446	+	948.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	755.0	NM_010398	15040.0	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	167.61	168.65	89.72	192.29	191.27	142.27	153.15	191.02	134.27
Merged-chr1-144245987-2	chr1	144245518	144246518	+	948.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015811, intron 4 of 4)	intron (NM_015811, intron 4 of 4)	3086.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	74.94	76.95	25.9	72.87	68.58	40.99	44.36	40.24	30.6
Merged-chr10-81620438-3	chr10	81619945	81620945	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6877.0	NM_001163430	50721.0	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	9.15	4.15	3.7	2.02	3.73	6.43	6.34	7.52	14.99
Merged-chr3-30647853-3	chr3	30647360	30648360	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027941)	promoter-TSS (NM_027941)	-26.0	NM_001290510	68307.0	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	2.29	1.84	0.0	2.02	2.8	4.82	2.11	2.65	1.25
Merged-chr8-76899749-3	chr8	76899227	76900227	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028579, intron 1 of 1)	CpG	894.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	76.66	73.73	21.27	129.55	99.37	69.13	89.78	70.3	44.34
Merged-chr7-100856430-3	chr7	100855934	100856934	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	6979.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	147.59	104.6	87.87	99.18	48.98	73.95	86.61	99.49	63.08
Merged-chr18-74208330-3	chr18	74207822	74208822	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164355)	promoter-TSS (NM_001164355)	-504.0	NM_025581	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	37.76	48.38	49.95	26.31	34.99	53.05	40.14	49.96	24.36
Merged-chr18-53238571-3	chr18	53238069	53239069	+	948.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7093.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	32.04	14.75	14.8	26.99	21.46	21.7	17.96	21.67	15.61
Merged-chr12-52502321-3	chr12	52501828	52502828	+	948.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13749.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	19.45	34.56	18.5	14.17	13.06	14.47	33.8	49.08	20.61
Merged-chr13-55693499-2	chr13	55693005	55694005	+	948.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181278, intron 1 of 1)	CpG	381.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	250.56	156.21	202.56	224.01	129.22	167.99	251.37	145.03	134.27
Merged-chr15-34181847-3	chr15	34181344	34182344	+	948.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56182.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	9.72	10.14	8.32	10.12	5.13	9.65	11.62	4.42	5.0
Merged-chr17-40790058-3	chr17	40789560	40790560	+	948.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204071, intron 4 of 9)	MLT1D|LTR|ERVL-MaLR	4086.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	8.01	4.61	12.95	4.05	7.93	8.04	6.34	7.52	7.49
Merged-chr12-79618131-3	chr12	79617608	79618608	+	948.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	306625.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	36.04	44.24	47.17	40.48	30.32	42.6	43.3	23.43	34.97
Merged-chr9-110685792-3	chr9	110685288	110686288	+	948.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	29285.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	16.59	12.44	19.42	30.36	19.59	19.29	25.35	18.13	15.61
Merged-chr19-6306558-6	chr19	6306047	6307047	+	948.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033342)	promoter-TSS (NM_001033342)	90.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	128.14	94.0	101.74	102.56	69.04	80.38	103.51	59.25	35.6
Merged-chr11-120510852-3	chr11	120510354	120511354	+	948.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19017.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	84.66	55.29	42.55	77.59	47.12	63.5	69.71	59.25	36.22
Merged-chr11-93980020-3	chr11	93979523	93980523	+	948.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11502.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	33.75	24.88	21.27	20.24	16.33	22.51	29.57	12.82	21.86
Merged-chr18-80416739-3	chr18	80416236	80417236	+	948.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-52482.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	21.74	21.2	5.55	20.24	16.79	19.29	11.62	6.63	14.36
Merged-chr9-40392553-3	chr9	40392033	40393033	+	948.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-16116.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	12.59	17.51	15.72	25.64	18.19	27.33	17.96	10.17	16.24
Merged-chr19-56724600-3	chr19	56724040	56725040	+	948.007935	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	2168.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	114.98	100.91	64.75	86.36	89.57	117.35	162.65	149.45	113.04
Merged-chr1-191171043-1	chr1	191170543	191171543	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_007498, exon 4 of 4)	3' UTR (NM_007498, exon 4 of 4)	-6226.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	9.15	1.84	1.85	4.72	3.27	3.22	3.17	1.33	4.37
Merged-chr16-30512168-3	chr16	30511667	30512667	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38411.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	26.89	26.73	26.82	45.21	29.86	24.92	6.34	11.05	14.99
Merged-chr11-54998461-3	chr11	54997942	54998942	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 13 of 24)	intron (NR_138556, intron 13 of 24)	35029.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	25.74	5.99	9.25	18.89	4.2	11.25	17.96	9.29	5.0
Merged-chr3-27677177-1	chr3	27676677	27677677	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	33275.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	20.59	20.74	21.27	40.48	31.72	20.09	25.35	22.55	15.61
Merged-chr16-35768947-2	chr16	35768446	35769446	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153550, exon 1 of 9)	exon (NM_153550, exon 1 of 9)	410.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	416.46	375.08	308.01	474.33	385.34	360.1	372.83	330.3	212.34
Merged-chr3-89200023-3	chr3	89199526	89200526	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NM_001077411	14466.0	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	22.31	17.51	18.5	20.24	5.6	33.76	16.9	21.22	18.11
Merged-chr5-24454165-1	chr5	24453665	24454665	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	1988.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	25.74	22.58	24.97	29.69	26.12	40.99	17.96	23.88	28.1
Merged-chr15-27724846-1	chr15	27724346	27725346	+	948.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43304.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	77.23	74.65	62.9	72.87	83.97	86.01	68.65	99.49	46.22
Merged-chr5-23674915-1	chr5	23674415	23675415	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	CpG	1052.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.57	4.15	1.85	2.7	2.8	3.22	0.0	4.42	1.87
Merged-chr8-80880577-3	chr8	80880048	80881048	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301298)	promoter-TSS (NM_001301298)	-29.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	40.04	36.86	37.92	47.23	48.98	82.79	48.58	33.16	33.1
Merged-chr18-60732594-1	chr18	60732094	60733094	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	547.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	77.23	94.46	81.4	82.99	64.38	75.56	106.67	115.85	46.84
Merged-chr11-32717040-1	chr11	32716540	32717540	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271347, intron 3 of 12)	intron (NM_001271347, intron 3 of 12)	74485.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	5.15	7.37	3.7	10.8	6.53	8.84	4.22	1.77	2.5
Merged-chr8-72474604-2	chr8	72474079	72475079	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359024, intron 2 of 17)	intron (NM_001359024, intron 2 of 17)	654.0	NM_001359024	27967.0	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	117.27	141.46	126.72	118.08	123.16	134.23	123.57	134.42	95.55
Merged-chr4-11003189-1	chr4	11002689	11003689	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	4430.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	20.59	21.66	20.35	6.75	3.73	4.82	27.46	19.9	10.62
Merged-chr8-121643561-4	chr8	121643032	121644032	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	8401.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	56.06	52.07	39.77	107.95	82.57	51.44	44.36	21.22	19.98
Merged-chr11-60143263-1	chr11	60142763	60143763	+	948.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037764, intron 1 of 4)	MIR3|SINE|MIR	3181.0	NM_001037764	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	9.15	7.37	5.55	6.07	5.6	3.22	4.22	6.19	7.49
Merged-chr16-38729801-3	chr16	38729303	38730303	+	948.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12456.0	NR_152434	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.29	5.07	5.55	3.37	6.53	4.82	2.11	4.42	8.74
Merged-chr16-22548368-3	chr16	22547882	22548882	+	947.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-16198.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	105.83	93.08	55.5	119.43	92.84	81.99	125.69	141.49	38.1
Merged-chr10-13869774-3	chr10	13869258	13870258	+	947.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347362)	promoter-TSS (NM_001347362)	-801.0	NM_001347362	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	78.37	90.77	49.95	95.14	88.64	41.8	106.67	102.58	34.35
Merged-chr11-5115120-3	chr11	5114611	5115611	+	947.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080595, intron 13 of 14)	intron (NM_080595, intron 13 of 14)	14946.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	4.0	1.84	6.47	2.02	0.93	0.0	6.34	0.88	1.25
Merged-chr11-121793726-3	chr11	121793215	121794215	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-36503.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	36.04	41.93	32.37	39.13	32.66	46.62	32.74	23.88	23.73
Merged-chr9-45049890-3	chr9	45049389	45050389	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357727, intron 5 of 5)	intron (NM_001357727, intron 5 of 5)	-5292.0	NM_001093749	319742.0	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	10.87	16.59	9.25	24.29	8.86	14.47	8.45	3.1	3.12
Merged-chr15-76770512-3	chr15	76770094	76771094	+	947.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	Lx7|LINE|L1	-46749.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	183.63	214.73	107.29	203.76	202.46	130.21	197.51	234.35	102.42
Merged-chr7-3915601-3	chr7	3915085	3916085	+	947.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011087)	promoter-TSS (NM_011087)	-84.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	6.29	11.52	21.27	15.52	9.8	3.22	4.22	3.98	9.99
Merged-chr9-120927419-3	chr9	120926923	120927923	+	947.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	3379.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	36.61	27.65	12.95	40.48	24.72	31.35	33.8	22.99	13.12
Merged-chr6-124740454-3	chr6	124739961	124740961	+	947.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013535, intron 2 of 2)	intron (NM_013535, intron 2 of 2)	618.0	NM_013535	14790.0	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	120.7	104.6	112.84	99.86	74.17	107.71	97.17	103.47	104.92
Merged-chr19-11513698-3	chr19	11513198	11514198	+	947.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4861.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	30.32	30.41	31.45	26.99	36.39	39.39	29.57	26.97	23.73
Merged-chr11-51890510-3	chr11	51890013	51891013	+	947.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-32883.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	44.62	53.91	46.25	63.42	58.78	62.7	71.82	61.9	31.85
Merged-chr13-109298300-3	chr13	109297836	109298836	+	947.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-26408.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	32.04	44.24	12.95	36.43	25.19	40.99	51.75	42.45	31.85
Merged-chr15-79524881-2	chr15	79524392	79525392	+	947.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134090, exon 3 of 5)	exon (NM_134090, exon 3 of 5)	8025.0	NM_152806	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	7.44	5.07	11.1	16.19	9.8	5.63	8.45	7.52	6.25
Merged-chr7-80203709-3	chr7	80203196	80204196	+	947.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	5255.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	138.44	78.79	68.45	105.26	90.04	64.3	72.88	76.05	22.48
Merged-chr2-27764631-2	chr2	27764143	27765143	+	947.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54060.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	85.81	75.11	53.65	78.27	44.78	59.48	49.64	45.54	54.33
Merged-chr19-42753831-2	chr19	42753310	42754310	+	947.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-1035.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	90.38	101.83	69.37	87.04	76.04	92.44	87.66	97.28	48.09
Merged-chr7-83597042-3	chr7	83596546	83597546	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 4 of 22)	intron (NM_177695, intron 4 of 22)	12115.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	7.44	10.6	9.25	6.75	5.13	6.43	15.84	17.24	16.86
Merged-chr17-35867125-3	chr17	35866621	35867621	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175242, exon 1 of 3)	5' UTR (NM_175242, exon 1 of 3)	506.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	86.95	75.57	124.87	68.82	45.25	133.43	79.21	71.19	109.29
Merged-chr6-137405906-3	chr6	137405416	137406416	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-4805.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	16.59	18.89	6.47	16.19	11.66	28.94	13.73	16.8	7.49
Merged-chr11-33932064-3	chr11	33931566	33932566	+	947.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-30947.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	14.87	20.74	12.02	20.24	15.86	16.88	11.62	11.94	8.74
Merged-chr3-79099246-1	chr3	79098746	79099746	+	947.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099624, intron 3 of 23)	intron (NM_001099624, intron 3 of 23)	45641.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.72	11.06	7.4	61.4	49.92	30.54	23.24	22.11	6.87
Merged-chr2-43761982-3	chr2	43761468	43762468	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 1 of 14)	intron (NM_001301831, intron 1 of 14)	13144.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	25.74	17.05	11.1	12.82	18.19	20.09	14.79	10.61	18.74
Merged-chr2-59393349-3	chr2	59392854	59393854	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-6672.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	42.33	25.8	32.37	26.99	25.19	45.82	32.74	42.89	34.35
Merged-chr10-84935740-3	chr10	84935233	84936233	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013441, intron 2 of 8)	intron (NM_001013441, intron 2 of 8)	18120.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	7.44	8.29	5.55	10.12	5.13	4.82	4.22	7.07	11.24
Merged-chr6-117462258-3	chr6	117461773	117462773	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32962.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	12.59	9.68	16.65	9.45	3.27	6.43	16.9	15.03	11.24
Merged-chr6-136965341-3	chr6	136964863	136965863	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10840.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	28.6	20.27	14.8	41.83	20.99	20.9	48.58	51.73	24.36
Merged-chr17-86166692-3	chr17	86166191	86167191	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1094.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	210.52	225.78	208.11	203.76	260.31	174.42	180.61	170.23	69.95
Merged-chr10-80597298-3	chr10	80596787	80597787	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5593.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	93.82	87.55	74.0	98.51	51.32	79.58	128.85	161.39	73.07
Merged-chr17-8140437-3	chr17	8139954	8140954	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 4 of 8)	intron (NM_026611, intron 4 of 8)	7334.0	NM_001083938	100037283.0	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	7.44	1.38	1.85	6.07	7.46	6.43	5.28	2.65	3.75
Merged-chr1-91062580-3	chr1	91062077	91063077	+	947.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	9133.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	56.06	28.11	19.42	25.64	13.53	16.08	34.85	38.47	18.11
Merged-chr8-106155291-3	chr8	106154808	106155808	+	947.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 2 of 5)	intron (NM_001357319, intron 2 of 5)	4954.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	41.76	42.39	40.7	39.81	31.72	41.8	29.57	43.77	34.35
Merged-chr3-153571646-7	chr3	153571135	153572135	+	947.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	153498.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	85.24	107.36	60.12	109.3	101.23	71.54	168.99	192.34	76.19
Merged-chr5-148477753-3	chr5	148477274	148478274	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	73899.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	13.73	9.68	5.55	22.27	11.2	9.65	10.56	13.27	10.62
Merged-chr10-42273894-3	chr10	42273337	42274337	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2905.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	33.75	24.42	17.57	26.99	21.93	29.74	30.63	24.76	34.97
Merged-chr12-86887770-3	chr12	86887265	86888265	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2951.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	120.13	159.43	130.42	116.05	87.7	122.18	166.88	214.45	128.65
Merged-chr1-150377466-3	chr1	150376978	150377978	+	947.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357579, intron 9 of 13)	L1_Mus2|LINE|L1	-15360.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	23.45	29.03	39.77	35.76	22.86	36.17	33.8	26.97	23.73
Merged-chr6-72789403-6	chr6	72788891	72789891	+	947.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009332)	promoter-TSS (NM_009332)	-346.0	NM_009332	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	9.15	7.83	16.65	8.1	5.13	4.82	30.63	7.96	4.37
Merged-chr11-78159285-3	chr11	78158778	78159778	+	947.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009423, exon 7 of 7)	3' UTR (NM_009423, exon 7 of 7)	6272.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	2.86	1.84	1.85	9.45	1.4	3.22	1.06	0.0	2.5
Merged-chr11-65675838-3	chr11	65675345	65676345	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58987.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	5.72	5.07	12.02	8.77	7.93	4.82	2.11	1.33	3.75
Merged-chr2-159783441-1	chr2	159782941	159783941	+	947.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163900.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	29.75	25.8	31.45	20.92	20.06	24.92	38.02	17.69	38.72
Merged-chr8-79372816-4	chr8	79372384	79373384	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	26584.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	130.43	176.94	147.99	128.2	126.89	111.73	134.14	185.27	86.18
Merged-chr11-21091834-3	chr11	21091330	21092330	+	947.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	CpG	506.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	229.39	209.2	179.44	176.1	144.15	147.09	194.34	135.75	128.03
Merged-chr13-52726291-1	chr13	52725791	52726791	+	947.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	30914.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	4.58	3.23	3.7	6.75	6.53	14.47	6.34	3.54	6.87
Merged-chr13-92668421-2	chr13	92667916	92668916	+	947.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	57278.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	14.87	17.05	11.1	20.92	27.52	35.37	21.12	12.38	18.11
Merged-chr8-104103673-2	chr8	104103168	104104168	+	947.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	2043.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	14.87	6.45	17.57	21.59	15.86	12.06	15.84	4.42	7.49
Merged-chr12-3745921-2	chr12	3745418	3746418	+	947.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-61062.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	40.62	41.93	49.02	52.63	37.32	45.01	33.8	47.31	17.49
Merged-chr15-101974675-2	chr15	101974174	101975174	+	947.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20387.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	83.52	117.96	99.89	122.8	104.03	189.69	142.59	148.57	110.54
Merged-chr11-64065383-2	chr11	64064883	64065883	+	947.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	14089.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	9.72	8.29	3.7	0.0	5.13	3.22	21.12	11.5	6.25
Merged-chr3-18339316-3	chr3	18338818	18339818	+	947.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-95980.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	4.58	9.22	9.25	4.72	5.6	16.08	6.34	4.42	8.74
Merged-chr11-98022782-3	chr11	98022227	98023227	+	947.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031173)	promoter-TSS (NM_031173)	-100.0	NM_001282978	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	95.53	82.02	132.27	90.41	65.78	95.65	138.36	122.92	74.32
Merged-chr1-105997476-3	chr1	105996984	105997984	+	947.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	7078.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	42.9	62.67	49.95	42.51	54.58	64.3	45.42	65.0	43.09
Merged-chr2-6713712-3	chr2	6713241	6714241	+	947.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	7921.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	31.46	41.93	22.2	37.11	26.12	36.17	30.63	32.28	19.98
Merged-chr4-55631319-3	chr4	55630808	55631808	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-98833.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	16.02	17.05	14.8	21.59	19.59	28.94	20.07	10.17	21.23
Merged-chr14-70029180-3	chr14	70028672	70029672	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48273.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	4.58	6.45	5.55	0.67	2.33	4.82	1.06	5.75	8.74
Merged-chr1-152511451-3	chr1	152510950	152511950	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177756)	TTS (NM_177756)	111583.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	8.58	7.83	9.25	3.37	4.2	8.04	7.39	1.77	7.49
Merged-chr6-29171208-3	chr6	29170721	29171721	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-6497.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	4.0	0.92	7.4	2.7	2.33	4.82	3.17	1.33	0.0
Merged-chr13-21172372-3	chr13	21171887	21172887	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-7544.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	13.16	17.51	14.8	8.77	1.87	16.08	6.34	2.21	6.87
Merged-chr14-33194423-3	chr14	33193936	33194936	+	947.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9370.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	216.81	243.29	119.32	219.96	179.61	134.23	159.48	192.78	128.03
Merged-chr3-138521450-3	chr3	138520947	138521947	+	947.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4744.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	82.95	68.2	50.87	102.56	96.1	89.22	126.74	104.35	74.94
Merged-chr7-31097795-3	chr7	31097286	31098286	+	947.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276269)	TTS (NM_001276269)	13211.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.0	2.76	1.85	6.07	1.4	0.0	1.06	2.65	5.0
Merged-chr11-61684290-3	chr11	61683810	61684810	+	947.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178618)	promoter-TSS (NM_178618)	-100.0	NM_178618	69640.0	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	7.44	8.29	7.4	7.42	13.53	5.63	14.79	13.27	10.62
Merged-chr9-105759084-2	chr9	105758594	105759594	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 13 of 36)	intron (NM_001102607, intron 13 of 36)	50554.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	4.58	3.23	7.4	10.12	4.2	12.86	0.0	0.44	2.5
Merged-chr17-81599379-1	chr17	81598879	81599879	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	139008.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	18.31	13.82	11.1	12.14	19.59	17.68	14.79	20.78	12.49
Merged-chr15-100543884-3	chr15	100543374	100544374	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8134.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	24.03	26.26	12.02	12.14	15.39	20.09	25.35	15.03	8.74
Merged-chr4-67478712-1	chr4	67478212	67479212	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	651161.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.72	6.45	0.92	4.05	5.13	4.82	1.06	3.1	7.49
Merged-chr12-85362700-1	chr12	85362200	85363200	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	L1MC3|LINE|L1	12017.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	12.01	16.59	12.95	17.54	11.66	27.33	10.56	10.61	14.36
Merged-chr10-37137930-2	chr10	37137443	37138443	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008538, intron 1 of 1)	intron (NM_008538, intron 1 of 1)	983.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	151.02	254.35	179.44	153.16	160.95	181.66	145.75	205.17	136.77
Merged-chr5-31154321-3	chr5	31153818	31154818	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008622)	promoter-TSS (NM_008622)	-67.0	NM_008622	17527.0	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	32.61	45.62	24.97	33.74	42.45	35.37	30.63	46.87	17.49
Merged-chr8-105606745-3	chr8	105606201	105607201	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	intron (NM_001081241, intron 1 of 21)	1472.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	107.55	97.23	74.92	64.1	59.25	67.52	61.26	50.41	29.35
Merged-chr15-36334556-1	chr15	36334056	36335056	+	947.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51409.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.0	1.38	0.0	11.47	10.26	6.43	1.06	2.21	3.75
Merged-chr2-150844926-3	chr2	150844389	150845389	+	947.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-2319.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	49.2	55.75	61.97	53.3	66.71	66.71	55.98	66.77	47.46
Merged-chrX-167342045-3	chrX	167341541	167342541	+	947.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-11470.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	42.33	50.69	39.77	51.95	51.78	44.21	47.53	38.03	31.23
Merged-chr4-8666860-3	chr4	8666363	8667363	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23543.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	28.03	17.51	16.65	22.94	5.13	12.86	7.39	10.61	6.25
Merged-chr4-35120325-3	chr4	35119807	35120807	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31748.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	6.86	2.3	5.55	3.37	4.67	3.22	3.17	3.1	1.25
Merged-chr5-20936022-3	chr5	20935527	20936527	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-14962.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	35.47	29.49	41.62	18.22	23.33	16.88	32.74	34.93	20.61
Merged-chr5-117159982-3	chr5	117159494	117160494	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	26406.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	167.61	193.99	193.32	192.97	149.28	139.86	154.2	162.72	79.94
Merged-chr10-57777222-3	chr10	57776710	57777710	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7713.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	75.51	67.27	32.37	69.5	56.45	86.81	39.08	42.89	53.71
Merged-chr9-116384367-3	chr9	116383859	116384859	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	195179.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	19.45	12.44	0.92	29.01	9.33	20.9	17.96	8.84	14.36
Merged-chr16-26041507-3	chr16	26041016	26042016	+	947.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	64268.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	16.02	13.36	2.77	12.82	7.0	8.04	3.17	5.31	4.37
Merged-chr10-78069276-3	chr10	78068772	78069772	+	947.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015790)	promoter-TSS (NM_015790)	-96.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	22.88	14.75	24.05	29.01	22.39	27.33	27.46	20.78	21.23
Merged-chr13-37751701-3	chr13	37751201	37752201	+	947.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74337.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	34.9	34.56	23.12	33.74	30.32	33.76	32.74	25.65	16.86
Merged-chr3-32297437-3	chr3	32296946	32297946	+	947.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68043.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	9.15	11.06	21.27	20.24	12.6	9.65	10.56	14.59	3.75
Merged-chr2-32353324-3	chr2	32352843	32353843	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125959)	promoter-TSS (NR_125959)	-14.0	NM_010065	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	9.15	3.69	3.7	7.42	4.2	0.0	1.06	4.86	0.0
Merged-chr19-14387973-3	chr19	14387480	14388480	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47970.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	14.87	18.43	1.85	19.57	25.19	10.45	8.45	18.13	8.12
Merged-chr10-94122277-3	chr10	94121776	94122776	+	947.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 9 of 20)	intron (NM_053072, intron 9 of 20)	-25655.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	20.02	17.97	20.35	14.84	10.26	24.92	38.02	40.24	21.23
Merged-chr1-74053297-3	chr1	74052809	74053809	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289895, intron 3 of 32)	intron (NM_001289895, intron 3 of 32)	71138.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	10.3	6.45	4.62	4.72	3.27	4.02	4.22	4.42	5.62
Merged-chr11-17160454-3	chr11	17159948	17160948	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	1150.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	114.41	143.76	100.82	82.32	120.83	89.22	114.07	136.63	61.2
Merged-chr14-43918363-3	chr14	43917859	43918859	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5009.0	NM_053112	93725.0	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	16.59	16.59	18.5	7.42	8.86	4.82	7.39	11.94	7.49
Merged-chr4-101657407-3	chr4	101656888	101657888	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	9605.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	44.05	72.34	69.37	56.0	84.44	97.26	55.98	99.49	76.82
Merged-chr10-43424677-1	chr10	43424177	43425177	+	947.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168289, intron 7 of 7)	B1F2|SINE|Alu	-54463.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	4.58	2.76	1.85	4.72	0.0	8.04	6.34	1.77	1.25
Merged-chr1-154093567-3	chr1	154093082	154094082	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107605.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	81.23	68.2	73.07	87.71	75.11	86.01	55.98	55.27	48.71
Merged-chr18-38929545-3	chr18	38929041	38930041	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10842.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	21.17	16.13	16.65	60.05	34.99	13.66	32.74	17.69	9.99
Merged-chr2-167348770-3	chr2	167348269	167349269	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	(CGCGG)n|Simple_repeat|Simple_repeat	409.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	159.6	93.54	96.2	225.36	94.23	114.14	229.19	104.79	62.45
Merged-chr10-80348531-3	chr10	80348034	80349034	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285435)	promoter-TSS (NM_001285435)	-86.0	NR_104340	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	10.3	4.15	0.0	11.47	3.73	12.86	7.39	2.21	6.87
Merged-chr18-9821375-1	chr18	9820875	9821875	+	947.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	113727.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	7.44	6.45	3.7	24.96	16.33	16.88	3.17	0.0	3.75
Merged-chr8-106585837-3	chr8	106585329	106586329	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1314.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	16.59	13.82	20.35	10.12	14.46	7.23	17.96	11.94	18.74
Merged-chr2-11331688-3	chr2	11331193	11332193	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7796.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	10.3	8.29	1.85	11.47	20.99	4.02	13.73	12.82	1.25
Merged-chr6-84020727-3	chr6	84020235	84021235	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	intron (NM_001310152, intron 1 of 53)	1349.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	60.64	56.22	39.77	49.93	39.65	45.01	68.65	63.67	35.6
Merged-chr4-6370785-3	chr4	6370278	6371278	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	5098.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	108.12	113.35	66.6	134.94	132.02	122.18	119.35	153.87	91.18
Merged-chr19-44332037-3	chr19	44331548	44332548	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-1278.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	11.44	6.91	9.25	20.92	16.33	11.25	34.85	26.97	7.49
Merged-chr10-84556368-3	chr10	84555855	84556855	+	947.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3017.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	9.72	16.59	12.95	10.8	12.6	35.37	21.12	20.34	11.87
Merged-chr5-138231658-2	chr5	138231149	138232149	+	947.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013773, intron 2 of 5)	intron (NM_001013773, intron 2 of 5)	5745.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	30.32	13.36	19.42	16.87	4.67	17.68	6.34	1.77	3.75
Merged-chr10-127062672-3	chr10	127062170	127063170	+	947.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009870)	promoter-TSS (NM_009870)	-865.0	NM_009870	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	43.48	36.4	9.25	60.05	41.05	21.7	41.19	19.9	12.49
Merged-chr17-56290376-5	chr17	56289879	56290879	+	947.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025836, intron 1 of 7)	intron (NM_025836, intron 1 of 7)	132.0	NM_025836	66905.0	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	114.41	99.99	63.82	168.68	131.56	79.58	158.43	172.0	76.19
Merged-chr11-51856542-4	chr11	51856055	51857055	+	947.263916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	CpG	926.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	161.32	154.82	157.24	197.02	200.6	222.65	232.36	210.91	126.78
Merged-chr17-35279454-2	chr17	35278960	35279960	+	947.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie4z|DNA|hAT-Charlie	16337.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	19.45	14.28	14.8	20.92	9.8	10.45	1.06	0.0	3.12
Merged-chr4-132805476-3	chr4	132805067	132806067	+	947.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-9203.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	275.73	246.52	171.12	243.57	146.48	143.88	269.33	333.84	178.61
Merged-chrUn_JH584304-46611-1	chrUn_JH584304	46111	47111	+	947.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	13078.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	42.25	17.69	0.0
Merged-chr16-35739752-3	chr16	35739249	35740249	+	947.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 2 of 8)	intron (NM_153550, intron 2 of 8)	29607.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	64.07	58.98	42.55	47.9	41.52	26.53	101.39	106.56	67.45
Merged-chr14-50898188-3	chr14	50897688	50898688	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4933.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	17.16	13.36	26.82	17.54	7.93	20.09	14.79	15.92	19.36
Merged-chr7-99976539-3	chr7	99976044	99977044	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	3914.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	56.63	37.78	44.4	37.78	20.06	22.51	24.29	22.55	14.36
Merged-chr9-119395107-1	chr9	119394607	119395607	+	947.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7071.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	1.72	5.07	1.85	2.7	7.46	4.82	11.62	7.07	18.74
Merged-chr11-120729703-3	chr11	120729206	120730206	+	947.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007621, exon 8 of 8)	3' UTR (NM_007621, exon 8 of 8)	2315.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	31.46	16.59	29.6	33.06	17.26	49.03	30.63	46.87	21.23
Merged-chr14-67933701-2	chr14	67933205	67934205	+	947.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-133.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	80.09	76.03	70.3	81.64	70.44	97.26	65.48	38.91	56.21
Merged-chr1-152779240-2	chr1	152778757	152779757	+	947.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12715.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	6.86	5.53	8.32	14.17	3.73	8.84	10.56	5.75	13.74
Merged-chr3-27291143-2	chr3	27290658	27291658	+	947.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25919.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	1.84	3.7	30.36	34.99	40.99	57.03	82.24	32.48
Merged-chr12-35192246-3	chr12	35191704	35192704	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2693.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	14.87	7.83	3.7	18.22	11.2	3.22	19.01	10.17	8.12
Merged-chr14-20885685-3	chr14	20885203	20886203	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43695.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	21.17	17.51	12.95	23.62	25.66	28.94	23.24	19.46	18.11
Merged-chr4-129623955-3	chr4	129623470	129624470	+	947.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025455)	promoter-TSS (NM_025455)	-62.0	NM_025455	66264.0	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	149.88	137.77	127.64	121.45	76.97	113.33	155.26	164.93	99.3
Merged-chr11-97412274-3	chr11	97411803	97412803	+	947.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37857.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	27.46	17.51	25.9	33.74	21.46	28.13	20.07	17.24	13.74
Merged-chr17-25678156-3	chr17	25677744	25678744	+	947.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38928.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	69.22	59.9	54.57	77.59	70.44	63.5	103.51	115.85	42.47
Merged-chr13-92844784-3	chr13	92844239	92845239	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162945)	promoter-TSS (NM_001162945)	-48.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	32.61	32.25	24.05	26.31	19.59	34.56	35.91	32.28	23.73
Merged-chr15-73726132-3	chr15	73725613	73726613	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	1183.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	60.64	72.34	74.0	71.52	48.98	73.95	118.29	80.92	46.22
Merged-chr2-45104405-3	chr2	45103929	45104929	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	5848.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	62.35	55.29	47.17	63.42	38.72	66.71	82.38	68.09	44.97
Merged-chr9-58627395-3	chr9	58626887	58627887	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357751, intron 3 of 8)	intron (NM_001357751, intron 3 of 8)	45147.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	20.02	17.05	12.02	26.99	11.66	25.72	24.29	23.43	29.35
Merged-chr18-60932496-3	chr18	60932031	60933031	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 1 of 17)	intron (NM_177407, intron 1 of 17)	6899.0	NM_177407	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	8.58	6.45	10.17	10.12	3.27	3.22	9.51	7.96	11.24
Merged-chr2-80065357-3	chr2	80064831	80065831	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	RMER19C|LTR|ERVK	-26429.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	12.59	3.69	2.77	11.47	6.06	9.65	9.51	4.86	7.49
Merged-chr11-74638576-3	chr11	74638084	74639084	+	947.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001013784, exon 4 of 4)	3' UTR (NM_001013784, exon 4 of 4)	-10911.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	89.24	56.68	81.4	97.83	63.45	106.1	82.38	61.46	59.33
Merged-chr17-71834497-2	chr17	71833996	71834996	+	947.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	52549.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	69.79	89.39	49.95	93.79	87.7	102.88	4.22	0.88	2.5
Merged-chr11-69245878-3	chr11	69245401	69246401	+	947.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8879.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	65.21	36.4	46.25	24.29	9.33	12.06	23.24	20.78	19.98
Merged-chr4-130810317-3	chr4	130809816	130810816	+	947.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	17779.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	45.76	35.02	49.95	52.63	37.32	71.54	71.82	51.73	46.22
Merged-chr11-117326415-3	chr11	117325907	117326907	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-5308.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	23.45	16.59	34.22	37.11	13.06	16.88	21.12	12.38	23.73
Merged-chr4-32248509-3	chr4	32248008	32249008	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168927.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	37.18	24.88	18.5	57.35	34.99	12.86	34.85	23.43	12.49
Merged-chr12-70010535-3	chr12	70010010	70011010	+	947.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081453)	TTS (NM_001081453)	-23508.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	15.45	21.2	16.65	19.57	13.53	24.11	14.79	17.69	15.61
Merged-chr2-60809021-1	chr2	60808521	60809521	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	MLT1C|LTR|ERVL-MaLR	72417.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	28.6	36.86	19.42	45.21	51.32	75.56	29.57	16.36	18.74
Merged-chr11-68973438-3	chr11	68972948	68973948	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028048)	TTS (NM_028048)	407.0	NM_021329	57785.0	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	9.72	8.75	29.6	9.45	19.59	27.33	13.73	11.05	11.24
Merged-chr12-21568716-2	chr12	21568246	21569246	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151310.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	6.29	5.53	5.55	4.72	2.8	6.43	2.11	1.33	1.25
Merged-chr11-69881475-1	chr11	69880975	69881975	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153143)	promoter-TSS (NM_153143)	-490.0	NM_153143	216858.0	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	39.47	35.48	40.7	41.83	40.59	50.64	36.97	25.65	18.11
Merged-chr10-94105640-1	chr10	94105140	94106140	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 7 of 20)	intron (NM_053072, intron 7 of 20)	-42291.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	4.58	4.15	11.1	2.7	3.73	3.22	15.84	7.96	36.22
Merged-chr10-26836768-3	chr10	26836302	26837302	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	64290.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	21.74	23.04	20.35	25.64	15.86	27.33	14.79	11.94	22.48
Merged-chr12-17522718-1	chr12	17522218	17523218	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22155.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	1.72	1.84	5.55	0.0	0.47	0.0	2.11	2.21	7.49
Merged-chr6-48047659-1	chr6	48047159	48048159	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347139, exon 1 of 6)	5' UTR (NM_001347139, exon 1 of 6)	135.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	5.15	2.3	7.4	8.77	3.27	12.86	13.73	1.33	3.75
Merged-chr12-91012713-3	chr12	91012213	91013213	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181815, intron 24 of 25)	intron (NM_181815, intron 24 of 25)	-33135.0	NR_045858	71349.0	Mm.442093	NR_045858	ENSMUSG00000085004	5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	3.43	6.45	14.8	6.07	7.0	19.29	4.22	9.29	8.74
Merged-chr6-24600339-1	chr6	24599839	24600839	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053098, intron 1 of 2)	intron (NM_053098, intron 1 of 2)	2568.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	12.01	9.22	7.4	8.77	7.93	6.43	5.28	7.96	8.74
Merged-chr17-35267173-1	chr17	35266673	35267673	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001267808)	TTS (NM_001267808)	4050.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	24.03	12.44	12.02	8.77	4.67	8.84	6.34	2.65	9.99
Merged-chr7-80998106-5	chr7	80997619	80998619	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	intron (NM_178707, intron 1 of 9)	4435.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	45.76	85.71	37.0	56.68	44.78	39.39	73.93	76.94	43.09
Merged-chr16-31756651-2	chr16	31756139	31757139	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	2289.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	54.35	83.86	43.47	45.88	27.06	22.51	39.08	38.91	20.61
Merged-chr5-117138735-3	chr5	117138222	117139222	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	5134.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	36.04	24.88	24.97	36.43	30.32	35.37	26.4	16.36	19.98
Merged-chr6-149355333-1	chr6	149354833	149355833	+	947.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45919.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.57	7.37	5.55	1.35	4.67	14.47	30.63	26.97	19.98
Merged-chr9-97572609-1	chr9	97572109	97573109	+	947.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022319, intron 4 of 17)	intron (NM_022319, intron 4 of 17)	-202651.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	13.16	13.36	9.25	7.42	27.99	22.51	12.67	13.71	21.23
Merged-chr1-60974170-3	chr1	60973651	60974651	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3763.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	57.21	73.73	44.4	83.66	68.11	99.67	94.0	84.45	61.83
Merged-chr18-44758268-1	chr18	44757768	44758768	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085373, intron 2 of 18)	intron (NM_001085373, intron 2 of 18)	53914.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	41.76	73.73	48.1	47.23	47.58	62.7	67.6	65.88	66.2
Merged-chr1-72711931-3	chr1	72711435	72712435	+	947.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009084, intron 2 of 3)	intron (NM_009084, intron 2 of 3)	675.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	72.65	129.48	76.77	95.81	118.96	95.65	97.17	94.62	76.82
Merged-chr8-110594343-3	chr8	110593856	110594856	+	946.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 79 of 86)	intron (NM_172916, intron 79 of 86)	-24211.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	12.01	5.53	3.7	7.42	7.46	3.22	15.84	3.54	6.87
Merged-chr15-67977657-3	chr15	67977170	67978170	+	946.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	281186.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	14.87	6.45	5.55	12.14	11.2	4.82	7.39	7.52	6.25
Merged-chr2-18903849-3	chr2	18903301	18904301	+	946.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355149, intron 3 of 10)	intron (NM_001355149, intron 3 of 10)	94320.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	62.93	60.36	52.72	59.38	49.45	28.94	46.47	34.49	19.36
Merged-chr19-8718518-3	chr19	8718020	8719020	+	946.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-4623.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	10.87	8.75	3.7	10.8	2.33	9.65	7.39	4.86	2.5
Merged-chr7-98106788-3	chr7	98106267	98107267	+	946.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	2481.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	16.02	10.6	17.57	10.8	5.13	13.66	31.69	33.6	24.36
Merged-chr8-70601444-3	chr8	70600947	70601947	+	946.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 4 of 16)	CpG	6867.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	50.34	30.87	29.6	18.89	18.19	20.09	27.46	24.32	23.73
Merged-chr14-19733504-3	chr14	19732977	19733977	+	946.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17780.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	21.17	14.75	24.97	37.78	16.79	32.15	24.29	8.4	31.85
Merged-chr11-21006897-3	chr11	21006394	21007394	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84430.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	50.34	47.0	42.55	57.35	45.72	69.13	58.09	47.31	45.59
Merged-chr1-184853471-3	chr1	184852978	184853978	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7631.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	15.45	9.22	12.95	8.1	5.6	9.65	2.11	7.96	9.37
Merged-chr1-171559012-3	chr1	171558479	171559479	+	946.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018729)	promoter-TSS (NM_018729)	-214.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	64.64	44.7	41.62	74.89	55.98	82.79	25.35	17.69	16.24
Merged-chr1-88562550-3	chr1	88562031	88563031	+	946.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037971)	TTS (NR_037971)	11014.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	10.3	8.75	9.25	16.87	3.27	8.04	16.9	6.63	0.62
Merged-chr10-40437360-2	chr10	40436875	40437875	+	946.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291817, intron 4 of 11)	L1_Mus2|LINE|L1	88067.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	5.15	6.45	5.55	5.4	6.53	3.22	6.34	3.98	2.5
Merged-chr4-132555156-2	chr4	132554653	132555653	+	946.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8914.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	30.89	28.11	18.5	45.88	34.52	20.09	24.29	22.55	24.98
Merged-chrUn_JH584304-12755-1	chrUn_JH584304	12255	13255	+	946.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	46934.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	44.36	34.49	0.0
Merged-chr6-72615306-3	chr6	72614798	72615798	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009443, intron 2 of 3)	intron (NM_009443, intron 2 of 3)	1450.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	39.47	31.33	12.95	27.66	28.46	25.72	23.24	34.05	14.99
Merged-chr7-98085545-3	chr7	98085035	98086035	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23713.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	94.39	84.32	108.22	101.88	97.97	92.44	137.3	149.01	59.33
Merged-chr9-83599634-3	chr9	83599140	83600140	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172507, exon 4 of 4)	3' UTR (NM_172507, exon 4 of 4)	51302.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	9.72	12.9	12.95	7.42	11.2	10.45	15.84	14.15	8.12
Merged-chr2-58920781-3	chr2	58920294	58921294	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L1MA6|LINE|L1	165610.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	280.31	316.1	105.44	317.12	250.05	196.93	275.66	344.01	122.41
Merged-chr16-20325539-1	chr16	20325039	20326039	+	946.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183158)	promoter-TSS (NM_183158)	-135.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	5.15	12.9	1.85	6.07	6.06	28.13	3.17	9.73	6.25
Merged-chr4-58568470-3	chr4	58567964	58568964	+	946.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14973.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	14.87	12.9	16.65	7.42	15.39	6.43	17.96	15.03	12.49
Merged-chr7-90461140-3	chr7	90460624	90461624	+	946.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3916.0	NM_025460	66271.0	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	10.87	8.29	7.4	17.54	8.4	14.47	9.51	11.05	8.74
Merged-chr11-83067341-3	chr11	83066846	83067846	+	946.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	RLTR11A|LTR|ERVK	2234.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	121.28	94.92	77.7	125.5	65.78	113.33	116.18	122.04	81.81
Merged-chr16-10496199-3	chr16	10495726	10496726	+	946.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	intron (NM_001302619, intron 2 of 19)	6445.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	21.17	23.04	23.12	11.47	7.46	8.04	23.24	20.78	6.25
Merged-chr9-118868033-3	chr9	118867520	118868520	+	946.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-58516.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	77.8	67.27	49.95	89.74	64.38	56.27	62.31	46.43	24.36
Merged-chrX-10868254-3	chrX	10867763	10868763	+	946.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150898.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	12.01	10.6	1.85	19.57	9.33	23.31	8.45	9.73	3.75
Merged-chr4-141562437-3	chr4	141561902	141562902	+	946.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	16240.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	33.75	26.73	24.05	61.4	22.39	33.76	55.98	37.58	24.98
Merged-chr1-131981764-3	chr1	131981263	131982263	+	946.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145977, exon 5 of 5)	3' UTR (NM_145977, exon 5 of 5)	11154.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	28.6	28.57	44.4	29.69	19.59	28.13	12.67	15.92	30.6
Merged-chr16-55820501-6	chr16	55820011	55821011	+	946.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 2 of 12)	intron (NM_001159395, intron 2 of 12)	1627.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	156.74	212.88	94.35	155.86	159.55	87.61	151.03	183.06	70.57
Merged-chr7-110179408-3	chr7	110178894	110179894	+	946.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42309.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	28.6	16.59	12.02	20.92	17.26	14.47	38.02	30.51	22.48
Merged-chr5-122994659-3	chr5	122994171	122995171	+	946.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045820, intron 2 of 2)	intron (NR_045820, intron 2 of 2)	5317.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	14.3	12.44	3.7	5.4	10.73	4.02	12.67	17.69	2.5
Merged-chr2-75590346-3	chr2	75589839	75590839	+	946.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68920.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.15	2.3	0.0	2.02	2.8	1.61	4.22	6.19	4.37
Merged-chrX-8096580-3	chrX	8096068	8097068	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003632)	promoter-TSS (NR_003632)	-519.0	NR_003632	627782.0	Mm.305432	NM_001037930	ENSMUSG00000086404	Gm6787	EG627782	proteasome (prosome, macropain) subunit, beta type 7 pseudogene	pseudo	117.27	73.26	62.9	105.93	63.45	69.93	94.0	88.43	37.47
Merged-chr3-105016410-1	chr3	105015910	105016910	+	946.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	L1ME2|LINE|L1	36543.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	35.47	44.24	24.97	28.34	21.93	44.21	38.02	31.84	21.23
Merged-chrX-57392609-3	chrX	57392128	57393128	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166623, intron 1 of 8)	CpG	408.0	NM_011252	19655.0	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	118.99	112.43	84.17	66.12	82.11	69.13	89.78	108.77	68.7
Merged-chr3-55353530-6	chr3	55353025	55354025	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-108203.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	195.07	195.37	157.24	224.68	239.79	154.33	252.43	339.14	109.92
Merged-chr11-95336868-3	chr11	95336366	95337366	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172543)	promoter-TSS (NM_172543)	-152.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	10.87	11.52	12.95	23.62	22.86	49.83	24.29	16.36	22.48
Merged-chr4-89294802-3	chr4	89294317	89295317	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009877)	promoter-TSS (NM_009877)	-198.0	NM_009877	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	38.33	45.62	24.05	53.98	50.38	45.82	32.74	38.91	36.85
Merged-chr9-100456495-3	chr9	100455982	100456982	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	29991.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	29.17	41.93	55.5	35.09	33.12	60.28	35.91	31.39	34.35
Merged-chr8-33730869-3	chr8	33730324	33731324	+	946.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	24.03	15.21	3.7	26.31	13.53	12.86	19.01	9.29	16.24
Merged-chr8-117465481-3	chr8	117465003	117466003	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	6238.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	8.58	3.69	5.55	4.05	3.73	8.04	3.17	1.33	1.25
Merged-chr1-74380557-3	chr1	74380052	74381052	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 6 of 14)	intron (NM_013612, intron 6 of 14)	5349.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	47.48	51.15	94.35	56.0	32.66	107.71	70.76	62.35	54.96
Merged-chr7-66125565-3	chr7	66125068	66126068	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081163, exon 2 of 3)	exon (NM_001081163, exon 2 of 3)	16053.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	40.04	45.62	42.55	44.53	42.92	63.5	30.63	37.58	39.35
Merged-chr18-62985436-3	chr18	62984944	62985944	+	946.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 5 of 11)	intron (NM_028017, intron 5 of 11)	7528.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	61.78	75.57	49.02	71.52	40.12	55.46	99.28	99.05	42.47
Merged-chr7-100182589-3	chr7	100182088	100183088	+	946.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190869, intron 3 of 4)	intron (NM_001190869, intron 3 of 4)	3905.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	15.45	7.37	4.62	20.24	9.8	17.68	8.45	11.05	3.12
Merged-chr6-98092359-3	chr6	98091867	98092867	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	100584.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.86	13.82	3.7	8.1	19.13	5.63	13.73	13.27	7.49
Merged-chr2-155762060-3	chr2	155761563	155762563	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10846.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	30.32	43.31	47.17	21.59	22.86	20.9	60.2	49.52	44.97
Merged-chr7-80229886-3	chr7	80229391	80230391	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291276, intron 1 of 4)	PB1D10|SINE|Alu	2914.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	40.62	22.12	7.4	45.21	18.66	30.54	31.69	31.84	18.11
Merged-chr10-41888588-3	chr10	41888091	41889091	+	946.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	1152.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	75.51	80.18	40.7	39.13	43.39	53.05	81.33	73.4	59.95
Merged-chr1-171551578-2	chr1	171551080	171552080	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7613.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	15.45	16.59	3.7	16.19	8.4	1.61	6.34	2.65	2.5
Merged-chr7-49923146-1	chr7	49922646	49923646	+	946.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146013, intron 5 of 15)	PB1D11|SINE|Alu	11446.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	2.86	2.76	0.92	4.05	5.13	4.02	1.06	3.1	2.5
Merged-chr9-40802178-2	chr9	40801671	40802671	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031165, intron 2 of 8)	intron (NM_031165, intron 2 of 8)	898.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	77.23	70.5	73.07	108.63	69.04	65.91	116.18	103.02	73.69
Merged-chr19-9953000-3	chr19	9952494	9953494	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27606.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	105.26	106.44	78.62	138.32	120.36	124.59	157.37	185.71	85.56
Merged-chr4-15233891-2	chr4	15233396	15234396	+	946.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31924.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	18.88	32.25	30.52	29.01	36.85	12.06	8.45	5.75	3.75
Merged-chr6-124319733-2	chr6	124319232	124320232	+	946.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170395, intron 10 of 16)	intron (NM_001170395, intron 10 of 16)	15081.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	15.45	23.5	7.4	20.24	17.26	30.54	9.51	12.82	16.86
Merged-chr4-89265694-3	chr4	89265176	89266176	+	946.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	16516.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	5.15	6.45	1.85	7.42	3.73	14.47	5.28	3.98	1.25
Merged-chr2-122029029-3	chr2	122028572	122029572	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256055, intron 2 of 7)	CpG-8471	489.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	209.37	155.75	211.81	177.45	149.28	219.43	218.63	181.29	146.76
Merged-chr17-8158873-3	chr17	8158353	8159353	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6665.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	35.47	36.86	16.65	18.89	24.26	15.27	17.96	21.67	6.25
Merged-chr5-65136387-3	chr5	65135885	65136885	+	946.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359401, intron 1 of 5)	intron (NM_001359401, intron 1 of 5)	5154.0	NM_175174	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	22.31	31.33	28.67	12.82	13.53	10.45	26.4	26.09	19.98
Merged-chr7-97798287-3	chr7	97797785	97798785	+	946.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	L2c|LINE|L2	9744.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	33.75	31.79	27.75	31.71	12.13	21.7	44.36	31.84	24.36
Merged-chr10-71239727-3	chr10	71239217	71240217	+	946.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_009360	21780.0	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	21.17	13.82	11.1	12.14	16.79	12.86	20.07	9.73	9.37
Merged-chr18-69570489-3	chr18	69569988	69570988	+	946.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	224328.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	25.74	43.77	34.22	44.53	34.99	28.13	19.01	19.9	24.36
Merged-chr10-121376584-3	chr10	121376052	121377052	+	946.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 4 of 13)	intron (NM_029364, intron 4 of 13)	11462.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	195.64	160.81	90.65	257.07	187.07	155.93	182.72	198.53	91.18
Merged-chr4-150035496-3	chr4	150034991	150035991	+	946.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26468.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	4.58	2.76	5.55	7.42	2.33	0.0	2.11	2.65	1.87
Merged-chr13-44229456-2	chr13	44229000	44230000	+	946.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13013.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	18.31	9.68	3.7	36.43	18.66	11.25	9.51	7.52	2.5
Merged-chr5-73257340-2	chr5	73256859	73257859	+	946.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028194)	promoter-TSS (NM_028194)	-741.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	18.31	25.8	21.27	27.66	28.92	53.05	43.3	36.26	27.48
Merged-chr10-119004066-3	chr10	119003497	119004497	+	946.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	46502.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	8.01	2.3	1.85	10.12	2.8	4.82	5.28	3.54	3.75
Merged-chr16-94236911-3	chr16	94236410	94237410	+	946.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	53381.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	18.88	13.82	3.7	22.27	10.26	10.45	7.39	6.63	1.87
Merged-chr4-67473226-1	chr4	67472726	67473726	+	946.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	645675.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	5.15	1.84	0.0	2.02	4.2	0.0	0.0	1.77	0.0
Merged-chr14-56690890-3	chr14	56690400	56691400	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	10100.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	34.9	37.78	20.35	45.21	55.05	57.07	52.81	54.83	24.36
Merged-chr13-107676566-3	chr13	107676069	107677069	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-10828.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	12.59	10.14	9.25	12.82	8.4	6.43	2.11	1.33	3.12
Merged-chr4-150240191-3	chr4	150239672	150240672	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 2 of 11)	intron (NM_023119, intron 2 of 11)	2848.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	34.32	40.09	14.8	48.58	33.12	41.8	36.97	36.7	25.61
Merged-chr1-134791213-3	chr1	134790701	134791701	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	12520.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	58.92	52.99	45.32	25.64	14.93	18.49	14.79	10.17	29.98
Merged-chr11-50291036-3	chr11	50290514	50291514	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	1322.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	259.71	264.95	159.09	221.31	225.79	185.68	215.46	294.48	161.75
Merged-chr19-42019047-3	chr19	42018560	42019560	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	RLTR34B_MM|LTR|ERVK	-16978.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	125.28	87.09	59.2	112.68	104.03	98.87	58.09	54.39	41.84
Merged-chr6-124696017-3	chr6	124695517	124696517	+	946.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	16161.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	28.6	32.25	25.9	45.88	32.19	19.29	47.53	35.37	25.61
Merged-chrX-142228609-3	chrX	142228111	142229111	+	946.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	-92.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	52.63	40.55	43.47	51.28	30.32	27.33	76.05	70.75	43.09
Merged-chr2-116972749-3	chr2	116972252	116973252	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72600.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	288.32	321.17	189.62	283.38	250.52	216.22	247.15	317.92	177.99
Merged-chr15-90109615-3	chr15	90109139	90110139	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114672.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	7.44	12.44	3.7	15.52	18.19	10.45	3.17	4.86	13.12
Merged-chr10-96910113-3	chr10	96909613	96910613	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125655.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	9.72	7.83	9.25	10.8	8.86	8.84	8.45	10.61	9.99
Merged-chr17-26638819-3	chr17	26638218	26639218	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-37678.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	22.88	15.67	11.1	39.81	12.13	38.58	6.34	9.73	5.62
Merged-chr7-105691054-3	chr7	105690563	105691563	+	946.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	45521.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	4.0	7.37	5.55	4.05	4.67	0.0	6.34	2.21	1.87
Merged-chr6-93127624-3	chr6	93127121	93128121	+	946.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187039.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	20.02	11.98	8.32	24.96	49.92	45.01	9.51	4.42	3.75
Merged-chr11-61839498-4	chr11	61839005	61840005	+	946.255981	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 5 of 26)	B1_Mur4|SINE|Alu	15587.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	97.25	91.24	60.12	81.64	34.06	48.23	87.66	83.57	49.96
Merged-chr4-8645701-1	chr4	8645201	8646201	+	946.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44705.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	9.72	10.6	4.62	13.49	13.53	18.49	17.96	8.84	8.12
Merged-chr1-132477431-3	chr1	132476931	132477931	+	946.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	64.0	NM_172517	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	104.11	135.47	61.97	113.35	125.96	97.26	136.25	156.97	66.82
Merged-chr6-99665619-3	chr6	99665148	99666148	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	intron (NM_025829, intron 1 of 6)	1123.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	71.51	88.47	87.87	67.47	45.25	40.19	66.54	62.35	38.1
Merged-chr17-70847998-3	chr17	70847491	70848491	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164074, intron 1 of 2)	intron (NM_001164074, intron 1 of 2)	-1214.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	147.02	183.85	103.59	146.41	149.28	118.96	145.75	195.44	126.15
Merged-chr2-35978756-3	chr2	35978270	35979270	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 1 of 9)	intron (NM_029774, intron 1 of 9)	854.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	45.19	39.63	25.9	65.45	45.72	19.29	46.47	36.26	21.86
Merged-chr13-20111458-3	chr13	20110948	20111948	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	20941.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	31.46	21.66	23.12	43.18	26.59	17.68	27.46	25.65	11.24
Merged-chr17-88368066-3	chr17	88367563	88368563	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72641.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	12.01	11.52	9.25	14.84	9.8	8.04	16.9	22.99	26.23
Merged-chr11-120489463-3	chr11	120488984	120489984	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027204)	TTS (NM_027204)	-2353.0	NM_013770	27376.0	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	9.15	8.29	15.72	7.42	3.73	12.06	8.45	2.65	9.99
Merged-chr16-85117654-3	chr16	85117162	85118162	+	946.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	56045.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	25.74	10.14	16.65	16.87	15.86	28.13	13.73	15.48	19.36
Merged-chr15-66817178-3	chr15	66816676	66817676	+	946.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	14653.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	153.88	147.91	105.44	122.8	101.7	109.32	74.99	79.59	71.2
Merged-chr2-164938922-3	chr2	164938420	164939420	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9299.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	4.0	4.15	7.4	9.45	0.93	1.61	16.9	4.86	7.49
Merged-chrX-77511931-3	chrX	77511430	77512430	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	703.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	76.66	73.73	49.02	67.47	42.92	69.13	87.66	67.21	36.22
Merged-chr14-32784270-3	chr14	32783749	32784749	+	946.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1714.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	52.06	53.91	27.75	69.5	58.78	58.68	79.21	66.33	53.08
Merged-chr9-96559259-4	chr9	96558764	96559764	+	946.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 16 of 23)	MLTR11B|LTR|ERVK	72239.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	19.45	19.81	15.72	24.96	22.86	17.68	16.9	18.13	15.61
Merged-chr4-129608789-3	chr4	129608303	129609303	+	946.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029748)	TTS (NM_029748)	5454.0	NM_001195730	100504491.0	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366	doublecortin domain containing 2b	protein-coding	24.03	34.1	26.82	34.41	21.46	31.35	10.56	2.65	2.5
Merged-chr2-158154220-3	chr2	158153717	158154717	+	946.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7825.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	14.3	11.98	20.35	20.24	11.66	17.68	34.85	38.47	11.24
Merged-chr11-3171987-2	chr11	3171436	3172436	+	946.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	B1_Mur4|SINE|Alu	21527.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	60.64	77.41	118.39	85.69	94.23	101.28	4.22	4.86	143.02
Merged-chr2-127524629-3	chr2	127524115	127525115	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2521.0	NR_110989	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	5.15	4.61	5.55	8.77	3.27	3.22	21.12	11.94	13.74
Merged-chr1-85977885-3	chr1	85977375	85978375	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16820.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	8.58	3.69	1.85	6.75	3.27	2.41	3.17	2.21	8.12
Merged-chr7-16019598-3	chr7	16019083	16020083	+	946.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-20088.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	80.09	82.94	93.42	58.7	70.44	102.88	62.31	74.73	41.84
Merged-chr14-75178814-4	chr14	75178278	75179278	+	946.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	42353.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	272.3	251.59	158.17	226.71	182.87	210.59	301.01	276.8	225.45
Merged-chr5-136173767-3	chr5	136173307	136174307	+	946.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3151.0	NM_178751	269717.0	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	35.47	34.56	36.07	25.64	20.06	14.47	32.74	22.99	24.98
Merged-chr4-140701955-3	chr4	140701483	140702483	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 1 of 12)	CpG	510.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	88.1	66.81	91.57	91.09	57.85	134.23	142.59	83.13	54.33
Merged-chr6-39430911-3	chr6	39430417	39431417	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	10539.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	4.58	2.76	3.7	4.72	3.73	3.22	0.0	0.0	1.25
Merged-chr15-81045546-3	chr15	81045034	81046034	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	59513.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	135.58	112.43	81.4	119.43	79.77	90.02	92.94	65.88	53.71
Merged-chr1-9548787-3	chr1	9548230	9549230	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	782.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	80.66	72.8	49.95	58.7	89.57	47.42	47.53	52.62	27.48
Merged-chr3-51365468-3	chr3	51364982	51365982	+	946.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-24838.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	10.87	13.82	16.65	10.12	7.0	8.84	14.79	8.4	7.49
Merged-chr9-116243904-3	chr9	116243426	116244426	+	946.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54746.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	30.32	20.27	12.95	17.54	6.53	3.22	7.39	5.75	4.37
Merged-chr10-8849642-3	chr10	8849151	8850151	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	36419.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	91.53	77.41	68.45	110.65	51.78	75.56	96.11	55.27	47.46
Merged-chr10-68134744-2	chr10	68134246	68135246	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	143980.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	27.46	26.26	11.1	39.13	40.59	40.19	38.02	34.93	16.86
Merged-chr17-46524230-3	chr17	46523739	46524739	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081335, intron 16 of 40)	intron (NM_001081335, intron 16 of 40)	22149.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	84.09	79.72	98.97	73.54	58.78	88.42	66.54	85.78	92.43
Merged-chr16-92676648-3	chr16	92676142	92677142	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	20687.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	225.96	156.21	137.82	176.78	107.3	127.0	96.11	122.48	81.81
Merged-chr15-67899583-3	chr15	67899104	67900104	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	359252.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	25.74	17.51	19.42	26.99	27.06	30.54	26.4	16.36	18.74
Merged-chr2-137969446-1	chr2	137968946	137969946	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-287138.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	10.3	23.5	3.7	17.54	25.66	20.9	7.39	10.17	9.99
Merged-chr6-70790483-1	chr6	70789983	70790983	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	1692.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	8.01	6.91	12.95	4.72	1.4	1.61	5.28	3.1	8.12
Merged-chr1-177443510-1	chr1	177443010	177444010	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355100, intron 2 of 2)	intron (NM_001355100, intron 2 of 2)	-1143.0	NM_001355103	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	20.02	8.75	24.97	17.54	9.33	11.25	12.67	11.5	14.99
Merged-chr4-62561446-3	chr4	62560929	62561929	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 1 of 19)	intron (NM_019492, intron 1 of 19)	1582.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.15	2.76	1.85	9.45	5.6	4.82	2.11	4.86	1.25
Merged-chr10-67283721-1	chr10	67283221	67284221	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036293, intron 1 of 3)	intron (NM_001036293, intron 1 of 3)	1560.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	14.3	20.74	6.47	26.31	23.79	12.86	25.35	27.41	12.49
Merged-chr2-129570407-3	chr2	129569916	129570916	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22423.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	83.52	63.59	44.4	26.99	13.53	14.47	51.75	65.88	39.35
Merged-chr1-72106804-3	chr1	72106299	72107299	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101604.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	12.59	6.91	9.25	137.64	119.89	64.3	142.59	158.3	67.45
Merged-chr2-59954887-1	chr2	59954387	59955387	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 12 of 35)	intron (NM_001001182, intron 12 of 35)	-72281.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	9.72	2.76	12.95	6.07	8.4	4.82	8.45	4.42	1.25
Merged-chr13-37290881-3	chr13	37290390	37291390	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54455.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	33.75	34.56	12.95	50.6	62.98	40.19	32.74	31.84	22.48
Merged-chr10-117897351-2	chr10	117896859	117897859	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-28100.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	72.08	75.57	61.97	91.09	60.18	66.71	77.1	80.92	39.97
Merged-chr17-47139875-2	chr17	47139353	47140353	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	8.01	9.22	8.32	6.75	11.66	3.22	3.17	0.44	1.25
Merged-chr2-167944478-1	chr2	167943978	167944978	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	12151.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	38.9	40.09	47.17	49.25	29.39	36.17	48.58	32.28	26.23
Merged-chr4_GL456216_random-34969-1	chr4_GL456216_random	34469	35469	+	946.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 6 of 6)	CpG-10796	19088.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	28.52	20.34	0.0
Merged-chr12-4158387-1	chr12	4157887	4158887	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	RMER10A|LTR|ERVL	24234.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	12.59	11.06	8.32	18.89	17.26	36.17	13.73	6.19	11.87
Merged-chr9-65546447-3	chr9	65545934	65546934	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	33653.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	255.14	228.55	147.99	232.78	213.66	194.52	243.98	220.64	138.02
Merged-chr18-32818735-3	chr18	32818264	32819264	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1904.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	102.4	110.59	49.02	69.5	49.45	46.62	83.44	81.8	48.71
Merged-chr3-13551437-1	chr3	13550937	13551937	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	intron (NM_001357034, intron 1 of 7)	78638.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	5.72	4.61	1.85	3.37	5.6	1.61	4.22	1.77	2.5
Merged-chr11-18878212-1	chr11	18877712	18878712	+	946.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140757.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.29	3.23	0.0	0.67	0.93	1.61	1.06	3.1	2.5
Merged-chr11-77491248-3	chr11	77490755	77491755	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1577.0	NM_172945	268445.0	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	5.72	6.91	3.7	7.42	2.8	3.22	4.22	3.1	1.87
Merged-chr6-48841398-3	chr6	48840875	48841875	+	946.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164209)	promoter-TSS (NM_001164209)	-1.0	NM_001164208	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	27.46	39.17	34.22	23.62	17.26	20.09	34.85	27.41	44.34
Merged-chr3-144232127-3	chr3	144231632	144232632	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26877.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	10.3	7.37	0.0	7.42	4.67	3.22	5.28	5.75	4.37
Merged-chr17-29393771-3	chr17	29393255	29394255	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32841.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	152.17	88.93	47.17	87.71	41.05	17.68	79.21	67.65	23.73
Merged-chr14-17879675-3	chr14	17879185	17880185	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-101959.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	29.17	35.94	42.55	29.01	27.99	29.74	38.02	24.32	14.99
Merged-chr18-20750062-3	chr18	20749554	20750554	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	40.62	19.81	21.27	61.4	42.45	36.97	53.87	51.29	16.86
Merged-chr13-113036088-3	chr13	113035610	113036610	+	945.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030452)	TTS (NR_030452)	127.0	NR_030452	735309.0		NR_030452	ENSMUSG00000076146	Mir449c	Mirn449b|Mirn449c|mir-449c	microRNA 449c	ncRNA	2.29	2.3	3.7	2.7	2.8	0.0	5.28	6.19	3.75
Merged-chr19-47406688-3	chr19	47406176	47407176	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	ID_B1|SINE|B4	57735.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	29.75	36.86	39.77	38.46	28.92	28.94	55.98	37.58	24.36
Merged-chr10-7852076-3	chr10	7851574	7852574	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	15693.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	26.89	16.13	18.5	26.31	21.93	2.41	2.11	3.98	3.75
Merged-chr5-62821761-3	chr5	62821251	62822251	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7928.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	30.32	45.16	31.45	29.01	33.59	23.31	16.9	19.01	23.11
Merged-chr17-86964763-3	chr17	86964273	86965273	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	1662.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	24.6	17.97	1.85	33.74	19.59	12.86	53.87	37.14	29.35
Merged-chr3-9801849-3	chr3	9801354	9802354	+	945.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	31825.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	17.73	23.96	9.25	14.84	14.93	20.09	23.24	23.88	12.49
Merged-chr7-80024364-3	chr7	80023863	80024863	+	945.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146000)	promoter-TSS (NM_001146000)	-451.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	91.53	81.56	80.47	82.99	70.44	90.83	95.06	75.61	68.7
Merged-chr2-27691322-3	chr2	27690827	27691827	+	945.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	14126.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	73.79	80.18	63.82	82.99	74.17	84.4	69.71	58.37	74.94
Merged-chr18-79293950-3	chr18	79293445	79294445	+	945.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184554.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	31.46	30.87	18.5	22.27	17.26	32.15	16.9	14.15	14.36
Merged-chr2-157447308-2	chr2	157446816	157447816	+	945.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	L1M4|LINE|L1	23023.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	49.77	22.12	14.8	69.5	25.66	17.68	9.51	9.29	13.74
Merged-chr5-87204501-3	chr5	87203998	87204998	+	945.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	50290.0	NM_053215	112417.0	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	20.02	23.96	13.87	41.83	33.12	25.72	83.44	108.33	44.34
Merged-chr11-103406033-3	chr11	103405519	103406519	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	6645.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	26.31	28.57	20.35	29.69	18.19	37.78	31.69	26.97	17.49
Merged-chr7-16312359-3	chr7	16311847	16312847	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133234, exon 2 of 4)	exon (NM_133234, exon 2 of 4)	2764.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	229.97	173.72	168.34	227.38	133.89	164.78	295.73	204.72	148.01
Merged-chr17-88452598-3	chr17	88452092	88453092	+	945.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	L1Md_F2|LINE|L1	11888.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.86	6.91	2.77	5.4	4.2	11.25	0.0	2.21	12.49
Merged-chr11-111066606-3	chr11	111066107	111067107	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	443.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	98.39	91.24	86.95	81.64	74.64	77.16	104.56	114.52	63.08
Merged-chr19-25058016-3	chr19	25057525	25058525	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	58496.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	16.02	10.14	7.4	24.29	26.12	19.29	19.01	14.15	11.24
Merged-chr10-41523978-3	chr10	41523468	41524468	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016898, intron 3 of 5)	intron (NM_016898, intron 3 of 5)	4468.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	66.93	87.55	37.0	61.4	48.05	41.8	59.15	58.81	61.83
Merged-chr4-46390656-3	chr4	46390150	46391150	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	40.62	51.15	37.0	45.88	32.66	26.53	58.09	45.1	33.1
Merged-chr13-99029069-3	chr13	99028562	99029562	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44497.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	9.15	10.6	3.7	20.24	10.26	23.31	14.79	14.15	8.74
Merged-chr2-84601238-3	chr2	84600839	84601839	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	48141.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	24.03	18.43	32.37	21.59	13.06	32.15	22.18	30.95	18.74
Merged-chr19-41895753-3	chr19	41895238	41896238	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199447, intron 1 of 33)	intron (NM_199447, intron 1 of 33)	415.0	NM_199447	107094.0	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	147.59	108.75	95.27	107.28	81.64	46.62	119.35	157.85	63.7
Merged-chr9-90270833-3	chr9	90270329	90271329	+	945.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-60.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	97.25	146.07	150.77	111.33	141.82	164.78	177.44	147.68	141.14
Merged-chr1-170806376-2	chr1	170805876	170806876	+	945.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 9 of 15)	intron (NM_001081304, intron 9 of 15)	61395.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	10.87	5.53	3.7	26.99	17.26	33.76	19.01	14.59	18.11
Merged-chr10-83910912-3	chr10	83910502	83911502	+	945.746033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	188137.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	16.02	11.98	15.72	28.34	13.53	21.7	46.47	37.14	30.6
Merged-chr5-123257293-3	chr5	123256844	123257844	+	945.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	29154.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	27.46	23.96	12.02	25.64	20.99	12.86	13.73	7.96	6.25
Merged-chr13-51395893-3	chr13	51395366	51396366	+	945.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12752.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	22.31	25.8	8.32	36.43	24.26	29.74	17.96	13.71	12.49
Merged-chr2-59332760-3	chr2	59332246	59333246	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 11 of 20)	intron (NM_175464, intron 11 of 20)	53936.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	18.88	11.06	17.57	26.31	14.46	28.94	28.52	24.32	16.86
Merged-chr2-5741094-3	chr2	5740570	5741570	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26308.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	27.46	25.34	34.22	29.01	14.0	26.53	22.18	30.51	17.49
Merged-chr3-88718051-3	chr3	88717533	88718533	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	1179.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	57.21	97.23	46.25	74.89	85.84	86.01	96.11	112.31	82.44
Merged-chr9-106280582-3	chr9	106280075	106281075	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027354)	promoter-TSS (NM_027354)	-486.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	81.23	102.75	63.82	89.74	90.5	103.69	74.99	100.81	43.09
Merged-chr6-134752433-3	chr6	134751928	134752928	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-39932.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	30.32	27.65	10.17	35.09	16.33	20.9	43.3	37.58	29.35
Merged-chr12-3434849-3	chr12	3434352	3435352	+	945.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	7995.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	54.35	76.03	41.62	48.58	46.65	33.76	96.11	72.96	46.22
Merged-chr5-92332595-3	chr5	92332137	92333137	+	945.70636	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	810.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	80.09	82.48	57.35	65.45	49.92	73.95	69.71	84.45	61.2
Merged-chr5-28315740-1	chr5	28315240	28316240	+	945.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	-1449.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	9.15	13.36	7.4	12.82	10.73	12.86	3.17	7.07	1.25
Merged-chr13-5726193-3	chr13	5725676	5726676	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131916.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	18.88	19.81	36.07	20.92	20.06	36.97	16.9	12.82	23.11
Merged-chr7-143053545-3	chr7	143053072	143054072	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110354, exon 1 of 5)	non-coding (NR_110354, exon 1 of 5)	114.0	NR_110355	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	177.91	165.88	230.31	142.37	131.56	139.06	132.02	184.38	140.52
Merged-chr14-19777087-3	chr14	19776585	19777585	+	945.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008695, intron 4 of 20)	intron (NM_008695, intron 4 of 20)	25828.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	83.52	90.31	72.15	60.05	71.84	66.71	66.54	59.69	31.23
Merged-chr15-90323423-2	chr15	90322948	90323948	+	945.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30262.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	29.17	21.66	22.2	46.56	31.72	32.15	41.19	23.43	17.49
Merged-chr3-88521897-2	chr3	88521402	88522402	+	945.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10493.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	5.15	5.99	7.4	8.77	2.8	0.0	5.28	6.63	1.25
Merged-chr16-94617505-4	chr16	94617042	94618042	+	945.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	6123.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	84.66	81.56	61.05	116.73	90.04	65.91	79.21	69.86	39.97
Merged-chr10-88420839-3	chr10	88420351	88421351	+	945.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-38736.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	43.48	34.56	21.27	37.78	20.99	14.47	48.58	55.71	14.99
Merged-chr3-158077595-3	chr3	158077100	158078100	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40918.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	12.01	15.67	14.8	14.84	7.93	8.04	12.67	11.05	13.74
Merged-chr13-8861140-3	chr13	8860628	8861628	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172445, exon 2 of 14)	exon (NM_172445, exon 2 of 14)	9916.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	62.93	56.68	61.97	40.48	53.18	38.58	62.31	60.58	24.36
Merged-chr16-91853756-3	chr16	91853270	91854270	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 22 of 39)	exon (NM_010587, exon 22 of 39)	77860.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	60.64	51.15	12.02	90.41	62.51	73.14	77.1	73.4	45.59
Merged-chr16-33915185-3	chr16	33914676	33915676	+	945.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	51862.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	49.2	47.0	50.87	56.0	46.18	72.34	47.53	42.89	46.22
Merged-chr13-104611470-3	chr13	104610972	104611972	+	945.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	205481.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	36.04	34.56	19.42	47.23	27.99	33.76	46.47	62.79	36.22
Merged-chr5-41525681-3	chr5	41525185	41526185	+	945.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	182006.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	36.04	52.53	46.25	12.14	11.66	12.86	104.56	110.98	59.95
Merged-chr5-24035085-3	chr5	24034556	24035556	+	945.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4366.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	50.91	74.65	65.67	66.8	71.38	63.5	78.16	79.59	56.21
Merged-chr11-118148654-3	chr11	118148176	118149176	+	945.5714109999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19457.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	58.35	85.25	52.72	183.52	160.01	170.4	97.17	98.16	92.43
Merged-chr2-6695626-3	chr2	6695118	6696118	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	26044.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	37.76	31.33	25.9	32.39	22.39	17.68	31.69	32.72	20.61
Merged-chr4-125122554-3	chr4	125122010	125123010	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	5371.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	59.49	38.71	67.52	47.23	38.25	54.66	66.54	50.41	36.22
Merged-chr1-136126383-3	chr1	136125866	136126866	+	945.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	4817.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	25.17	15.21	12.02	20.24	9.33	20.9	39.08	32.72	9.99
Merged-chr7-39518710-3	chr7	39518205	39519205	+	945.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004139, intron 1 of 3)	ID_B1|SINE|B4	939.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	152.74	192.61	97.12	135.62	173.54	122.98	222.86	303.77	106.17
Merged-chr7-45593290-3	chr7	45592783	45593783	+	945.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18107.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	53.77	41.93	30.52	36.43	24.26	14.47	34.85	47.31	30.6
Merged-chr4-124751920-2	chr4	124751431	124752431	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-577.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	58.35	38.25	30.52	37.78	30.79	51.44	40.14	29.63	26.23
Merged-chr14-75231246-1	chr14	75230746	75231746	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001247984)	TTS (NM_001247984)	-11041.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	6.86	9.22	12.02	6.75	5.6	5.63	5.28	4.42	12.49
Merged-chr16-90461536-3	chr16	90461030	90462030	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	75133.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	5.15	4.15	1.85	4.72	2.33	4.82	2.11	2.21	1.25
Merged-chr9-71179497-3	chr9	71178996	71179996	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	MIR|SINE|MIR	10720.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	15.45	11.52	15.72	8.77	6.53	14.47	15.84	14.15	8.74
Merged-chr11-29149077-2	chr11	29148576	29149576	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	18325.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	45.19	36.4	32.37	45.21	51.78	39.39	85.55	93.3	51.21
Merged-chr14-19768892-3	chr14	19768394	19769394	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008695, exon 4 of 21)	exon (NM_008695, exon 4 of 21)	17637.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	56.63	33.18	37.0	51.95	22.39	24.11	33.8	20.78	19.98
Merged-chr13-85189960-2	chr13	85189457	85190457	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023243, intron 1 of 8)	intron (NM_023243, intron 1 of 8)	572.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	194.5	164.5	111.92	163.96	190.8	155.93	136.25	137.07	95.55
Merged-chr10-44607466-3	chr10	44606967	44607967	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148719.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	39.47	52.53	20.35	37.78	52.25	27.33	42.25	40.24	28.1
Merged-chr5-23920095-1	chr5	23919595	23920595	+	945.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310471, intron 10 of 10)	intron (NM_001310471, intron 10 of 10)	67862.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	3.43	0.92	8.32	2.7	4.2	4.82	1.06	1.77	3.12
Merged-chr1-36368814-3	chr1	36368313	36369313	+	945.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 1 of 20)	CpG	368.0	NM_172652	226976.0	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	149.88	94.92	146.14	176.78	100.77	98.87	174.27	114.96	67.45
Merged-chr9-58588874-3	chr9	58588370	58589370	+	945.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	6630.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	48.05	60.82	37.0	75.57	57.85	41.8	71.82	55.27	69.32
Merged-chr7-41500570-3	chr7	41500093	41501093	+	945.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033530)	promoter-TSS (NM_001033530)	-703.0	NM_001033530	101835.0	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	32.04	28.57	15.72	35.76	19.13	32.96	45.42	35.82	24.98
Merged-chr2-90522120-3	chr2	90521598	90522598	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIRb|SINE|MIR	-42924.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	52.06	58.52	55.5	97.83	59.71	70.73	77.1	71.63	41.22
Merged-chr12-54519534-3	chr12	54519040	54520040	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126472.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	5.15	5.99	5.55	4.72	4.67	6.43	7.39	3.98	14.36
Merged-chr8-41044089-3	chr8	41043584	41044584	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	L1MB1|LINE|L1	-2153.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	25.74	24.88	18.5	36.43	24.26	17.68	36.97	29.18	27.48
Merged-chr3-84685846-3	chr3	84685344	84686344	+	945.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	19652.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	7.44	1.84	1.85	7.42	6.06	4.82	6.34	2.21	3.75
Merged-chr15-84466626-3	chr15	84466137	84467137	+	945.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19540.0	NM_001163145	72301.0	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644|Shisal1	RIKEN cDNA 1810041L15 gene	protein-coding	4.0	3.23	9.25	8.1	7.93	9.65	9.51	4.86	2.5
Merged-chr12-32735477-2	chr12	32734960	32735960	+	945.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-84875.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	12.59	4.15	3.7	10.12	2.8	5.63	9.51	7.52	1.25
Merged-chr4-19604688-2	chr4	19604184	19605184	+	945.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025476, intron 8 of 9)	intron (NM_025476, intron 8 of 9)	29618.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	14.87	9.68	0.92	12.14	11.66	18.49	15.84	7.52	11.24
Merged-chr11-120894165-2	chr11	120893668	120894668	+	945.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	RSINE1|SINE|B4	38704.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	13.73	11.52	20.35	34.41	24.72	28.94	9.51	7.52	3.75
Merged-chr17-46772756-3	chr17	46772235	46773235	+	945.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025966)	promoter-TSS (NM_025966)	100.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	37.18	47.0	74.92	47.9	55.51	77.97	66.54	66.33	39.97
Merged-chr5-115508293-3	chr5	115507731	115508731	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	1555.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	101.25	160.35	170.19	111.33	111.96	146.29	135.19	120.71	114.29
Merged-chr2-102982994-3	chr2	102982518	102983518	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81353.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	13.73	4.61	0.0	39.13	6.53	12.86	8.45	11.05	9.37
Merged-chr10-94478010-3	chr10	94477529	94478529	+	945.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-36828.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	86.95	64.97	33.3	122.8	90.04	82.79	111.96	135.3	38.72
Merged-chr13-30769416-3	chr13	30768916	30769916	+	945.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	20183.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	16.02	24.88	10.17	26.99	16.79	9.65	19.01	11.5	9.99
Merged-chr3-116642100-3	chr3	116641592	116642592	+	945.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 5 of 11)	intron (NM_008246, intron 5 of 11)	20585.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	16.59	29.49	26.82	23.62	12.6	56.27	30.63	28.74	28.1
Merged-chr18-57786301-3	chr18	57785771	57786771	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152225, intron 1 of 2)	intron (NR_152225, intron 1 of 2)	6062.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	6.29	1.84	0.0	4.05	5.13	6.43	10.56	11.5	7.49
Merged-chr3-115766359-3	chr3	115765850	115766850	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51295.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	33.75	49.76	25.9	45.21	58.78	79.58	46.47	34.05	25.61
Merged-chr14-33400181-3	chr14	33399681	33400681	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	MLT1C|LTR|ERVL-MaLR	10843.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	12.01	19.35	11.1	21.59	11.2	12.06	22.18	19.46	6.25
Merged-chr4-155894425-3	chr4	155893929	155894929	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	2554.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	14.87	27.19	14.8	29.01	29.86	46.62	7.39	2.21	6.25
Merged-chr17-33524110-3	chr17	33523593	33524593	+	945.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172619)	promoter-TSS (NM_172619)	8.0	NM_001329147	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	10.87	7.37	4.62	6.75	9.33	6.43	12.67	10.17	11.24
Merged-chr1-152594918-3	chr1	152594403	152595403	+	945.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	30314.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	75.51	56.68	95.27	78.94	45.25	66.71	66.54	34.49	39.97
Merged-chr6-124360775-3	chr6	124360251	124361251	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	47.48	25.34	20.35	60.72	18.19	13.66	14.79	15.92	16.24
Merged-chr16-78198923-3	chr16	78198402	78199402	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	56552.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	10.3	13.82	1.85	10.12	2.33	8.84	10.56	7.07	8.74
Merged-chr10-88376936-3	chr10	88376447	88377447	+	945.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-2465.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	6.29	9.68	6.47	8.77	0.47	4.82	8.45	1.33	4.37
Merged-chr1-58393716-3	chr1	58393212	58394212	+	945.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025824, intron 1 of 11)	CpG	576.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	105.26	66.81	148.92	82.99	47.58	87.61	104.56	48.64	66.82
Merged-chr14-40933448-3	chr14	40932833	40933833	+	945.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	14876.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	55.49	29.95	37.92	68.15	42.92	55.46	34.85	39.35	26.23
Merged-chr12-76943181-3	chr12	76942611	76943611	+	945.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	B1_Mus2|SINE|Alu	19137.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	116.7	104.6	79.55	109.98	115.23	98.06	124.63	108.33	48.71
Merged-chr14-103059796-3	chr14	103059290	103060290	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	-10426.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	56.06	62.67	42.55	62.07	52.72	100.47	102.45	113.19	57.46
Merged-chr12-119377131-3	chr12	119376618	119377618	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66292.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	40.62	54.83	40.7	60.72	45.72	38.58	73.93	51.73	35.6
Merged-chr14-87044482-3	chr14	87043965	87044965	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019670, intron 4 of 27)	intron (NM_019670, intron 4 of 27)	96759.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	9.72	5.99	3.7	9.45	7.0	1.61	5.28	4.42	11.24
Merged-chr15-78587464-3	chr15	78586965	78587965	+	945.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5876.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	29.17	16.59	18.5	29.69	14.46	23.31	33.8	27.41	15.61
Merged-chr15-36791814-3	chr15	36791312	36792312	+	945.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253807)	promoter-TSS (NM_001253807)	-880.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	86.38	92.16	48.1	56.68	74.64	94.85	61.26	76.05	54.96
Merged-chr6-134225698-3	chr6	134225204	134226204	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 4 of 8)	intron (NM_001303102, intron 4 of 8)	-170625.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	75.51	52.07	69.37	24.96	10.73	17.68	30.63	45.1	14.99
Merged-chr1-138292277-3	chr1	138291764	138292764	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18526.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	26.89	20.27	20.35	24.29	14.46	23.31	17.96	14.59	10.62
Merged-chr9-25592277-3	chr9	25591775	25592775	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 6 of 7)	intron (NM_026189, intron 6 of 7)	110678.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	10.3	10.6	1.85	13.49	9.33	4.82	11.62	4.42	5.0
Merged-chr12-84031102-3	chr12	84030586	84031586	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7293.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	10.87	13.36	7.4	18.22	14.0	4.02	11.62	7.07	5.0
Merged-chr17-6272183-1	chr17	6271683	6272683	+	945.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033178, intron 1 of 16)	intron (NM_001033178, intron 1 of 16)	1713.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	13.73	6.19	1.87
Merged-chr11-107342609-3	chr11	107342117	107343117	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	MTC|LTR|ERVL-MaLR	128103.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	80.09	80.18	82.32	107.28	108.7	71.54	113.01	133.98	58.71
Merged-chr12-85111519-3	chr12	85111016	85112016	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030225, exon 2 of 15)	exon (NM_030225, exon 2 of 15)	683.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	316.92	299.97	221.06	246.27	251.91	227.47	201.73	246.29	164.88
Merged-chr19-11244410-3	chr19	11243919	11244919	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	21732.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	33.75	37.32	50.87	35.76	28.46	36.97	31.69	37.14	32.48
Merged-chr7-88304636-3	chr7	88304135	88305135	+	945.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 5 of 6)	intron (NM_009982, intron 5 of 6)	26550.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	57.78	66.81	51.8	53.98	54.58	60.28	61.26	77.82	42.47
Merged-chr11-54237177-3	chr11	54236664	54237664	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12735.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	5.15	5.53	3.7	7.42	2.33	3.22	4.22	3.1	6.25
Merged-chr7-46839044-3	chr7	46838486	46839486	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6818.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	58.92	61.75	66.6	66.8	59.25	90.83	86.61	68.09	36.85
Merged-chr4-49597467-3	chr4	49596879	49597879	+	945.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149725)	promoter-TSS (NR_149725)	91.0	NR_149725	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	5.72	3.23	4.62	6.75	3.73	9.65	5.28	3.1	3.75
Merged-chr5-130248065-3	chr5	130247570	130248570	+	945.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 4 of 4)	intron (NM_023248, intron 4 of 4)	7460.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	14.3	19.81	20.35	28.34	16.33	18.49	41.19	16.8	16.86
Merged-chr6-11926273-3	chr6	11925826	11926826	+	945.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362122, intron 1 of 16)	CpG	445.0	NM_001168382	75725.0	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	106.4	68.66	74.92	78.27	92.84	120.57	124.63	69.42	58.71
Merged-chr11-63925463-3	chr11	63924979	63925979	+	945.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3195.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	2.29	0.92	4.62	4.72	0.47	4.02	13.73	3.98	1.25
Merged-chr10-67729426-3	chr10	67728950	67729950	+	945.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157491.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.58	3.69	1.85	8.77	4.2	3.22	4.22	3.1	1.25
Merged-chr11-86745767-3	chr11	86745262	86746262	+	945.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	11805.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	127.57	120.26	75.85	121.45	87.7	105.3	87.66	127.34	88.06
Merged-chr13-37325684-3	chr13	37325170	37326170	+	945.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19675.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.58	6.45	7.4	7.42	2.33	4.82	7.39	3.1	10.62
Merged-chr13-59840970-3	chr13	59840465	59841465	+	945.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17818.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	11.44	8.29	9.25	13.49	2.8	2.41	7.39	2.65	3.75
Merged-chr2-181930864-3	chr2	181930361	181931361	+	945.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-60365.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	8.58	8.75	1.85	17.54	23.33	1.61	6.34	7.52	1.25
Merged-chr16-4560747-3	chr16	4560258	4561258	+	945.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1038.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	20.59	19.35	5.55	22.94	26.59	28.13	14.79	22.11	11.24
Merged-chr15-8629417-3	chr15	8628913	8629913	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81394.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	6.29	5.53	7.4	10.8	2.8	1.61	7.39	1.77	5.62
Merged-chr11-75564787-3	chr11	75564277	75565277	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	13348.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	149.88	123.95	90.65	124.82	104.03	110.92	110.9	107.89	67.45
Merged-chr11-116274520-1	chr11	116274020	116275020	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146032)	promoter-TSS (NM_146032)	-303.0	NM_146032	217337.0	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	79.52	49.76	31.45	136.29	89.1	88.42	124.63	100.37	49.34
Merged-chr6-17778990-3	chr6	17778575	17779575	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	B3A|SINE|B2	29905.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	19.45	27.65	25.9	12.82	15.39	30.54	33.8	36.7	34.35
Merged-chr11-26331435-1	chr11	26330935	26331935	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55649.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	2.86	2.76	3.7	1.35	3.27	1.61	2.11	3.98	2.5
Merged-chr5-137850461-3	chr5	137849978	137850978	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7571.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	11.44	17.05	11.1	12.82	8.86	24.11	27.46	11.05	14.99
Merged-chr6-71415694-1	chr6	71415194	71416194	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	24943.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	18.31	20.74	33.3	24.96	11.2	12.06	21.12	18.13	18.11
Merged-chr11-93736836-2	chr11	93736332	93737332	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148934.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	4.58	4.15	0.0	8.77	6.53	11.25	14.79	8.4	14.36
Merged-chr10-13201905-3	chr10	13201406	13202406	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8769.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	28.6	21.66	33.3	35.76	25.66	22.51	28.52	30.51	35.6
Merged-chr9-94432386-4	chr9	94431930	94432930	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	105651.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	122.42	108.75	86.02	105.93	55.51	53.85	121.46	113.19	82.44
Merged-chr13-37854558-3	chr13	37854014	37855014	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27121.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	149.31	144.69	97.12	118.75	127.82	119.76	144.7	167.14	77.44
Merged-chr10-56547998-3	chr10	56547518	56548518	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116037.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	7.44	8.29	0.92	8.77	7.0	8.04	5.28	3.98	3.12
Merged-chr10-69254613-3	chr10	69254110	69255110	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	MIRb|SINE|MIR	41416.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	50.91	59.44	44.4	47.9	34.99	34.56	47.53	32.72	34.97
Merged-chr11-100624011-3	chr11	100623499	100624499	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028024, intron 1 of 3)	intron (NM_028024, intron 1 of 3)	1044.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	120.13	103.68	83.25	122.8	70.44	107.71	312.63	304.21	126.15
Merged-chr2-145773091-1	chr2	145772591	145773591	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	2.86	2.76	1.85	5.4	5.13	4.82	3.17	2.21	12.49
Merged-chr18-32857361-1	chr18	32856861	32857861	+	945.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-20074.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	34.9	39.17	50.87	39.13	40.59	45.82	35.91	43.77	40.59
Merged-chr3-37502334-1	chr3	37501834	37502834	+	945.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82384.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	78.37	105.06	64.75	6.07	8.4	16.88	14.79	9.29	10.62
Merged-chr11-6475212-5	chr11	6474747	6475747	+	944.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011221, exon 1 of 1)	exon (NM_011221, exon 1 of 1)	829.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	269.44	283.38	321.88	194.99	230.46	250.78	220.74	201.19	207.34
Merged-chr19-24987540-3	chr19	24987036	24988036	+	944.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-11993.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	29.75	26.73	35.15	22.27	30.32	35.37	33.8	23.88	16.24
Merged-chr11-116413754-3	chr11	116413251	116414251	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027258)	promoter-TSS (NM_027258)	-719.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	73.22	55.75	68.45	130.22	87.7	61.89	128.85	124.69	54.96
Merged-chrX-160116856-3	chrX	160116344	160117344	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 22 of 28)	intron (NM_001163085, intron 22 of 28)	21586.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	51.48	52.07	46.25	39.81	27.06	37.78	65.48	71.19	29.35
Merged-chr11-64718881-3	chr11	64718372	64719372	+	944.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260163.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	8.58	5.07	8.32	1.35	1.4	5.63	2.11	2.21	8.74
Merged-chr2-148573366-3	chr2	148572863	148573863	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99252.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	26.89	18.89	9.25	14.84	20.99	12.86	34.85	26.97	31.23
Merged-chr2-6728376-3	chr2	6727879	6728879	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	L1_Mus2|LINE|L1	-6717.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	16.02	15.67	14.8	29.01	13.53	20.09	20.07	10.17	16.86
Merged-chr16-4370260-3	chr16	4369780	4370780	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	50218.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	28.03	31.79	15.72	43.18	27.06	24.92	21.12	22.11	10.62
Merged-chr9-21241499-3	chr9	21240984	21241984	+	944.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2152.0	NM_001110306	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	6.86	7.83	7.4	8.77	5.13	2.41	5.28	7.96	6.25
Merged-chr10-13833979-3	chr10	13833538	13834538	+	944.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	34919.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	52.63	66.81	56.42	41.83	51.32	29.74	91.89	86.66	46.22
Merged-chr13-34875951-3	chr13	34875482	34876482	+	944.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013830, intron 1 of 14)	CpG	488.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	189.35	160.35	178.52	163.96	160.48	174.42	166.88	126.02	129.28
Merged-chr17-25240123-3	chr17	25239594	25240594	+	944.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346737)	promoter-TSS (NM_001346737)	22.0	NM_172529	214505.0	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	36.61	31.79	51.8	53.3	54.58	79.58	30.63	35.37	26.85
Merged-chr15-66813075-3	chr15	66812571	66813571	+	944.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	18758.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	128.71	146.99	149.84	111.33	90.97	98.87	102.45	80.47	122.41
Merged-chr17-5493469-2	chr17	5492971	5493971	+	944.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146073, exon 1 of 9)	exon (NM_146073, exon 1 of 9)	871.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	205.37	223.02	220.14	232.1	198.73	258.82	309.46	248.06	158.01
Merged-chr17-67194321-3	chr17	67193843	67194843	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	160116.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	20.59	28.11	22.2	29.69	16.33	19.29	20.07	9.29	11.24
Merged-chr9-41072880-3	chr9	41072363	41073363	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	6643.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	21.17	33.18	38.85	15.52	10.26	32.96	54.92	60.58	46.84
Merged-chr6-142752684-3	chr6	142752205	142753205	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3981.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	20.02	29.03	35.15	31.04	29.39	45.82	38.02	29.18	34.35
Merged-chr19-46484306-3	chr19	46483803	46484803	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-17345.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	246.56	158.97	149.84	194.99	141.35	110.12	231.3	242.75	148.01
Merged-chr19-16407908-3	chr19	16407408	16408408	+	944.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27759.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	6.29	5.07	3.7	30.36	21.93	39.39	90.83	67.65	44.97
Merged-chr3-104817955-4	chr3	104817469	104818469	+	944.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008619, exon 1 of 20)	exon (NM_008619, exon 1 of 20)	336.0	NM_008619	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	181.34	131.78	133.19	145.74	113.83	86.81	173.21	162.72	79.32
Merged-chr3-95694595-3	chr3	95694098	95695098	+	944.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6681.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	32.61	23.04	13.87	39.81	26.12	16.08	60.2	38.91	28.1
Merged-chr4-129782041-3	chr4	129781547	129782547	+	944.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38432.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	75.51	78.79	50.87	62.75	47.58	73.95	82.38	87.11	68.07
Merged-chr3-105001552-3	chr3	105001057	105002057	+	944.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163332)	TTS (NM_001163332)	-39848.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	34.32	22.12	27.75	31.71	19.59	36.97	27.46	15.03	16.24
Merged-chr8-11168175-1	chr8	11167675	11168675	+	944.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-144630.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	10.3	2.76	7.4	6.75	5.6	8.04	1.06	0.0	1.87
Merged-chrX-107148862-3	chrX	107148362	107149362	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122596)	promoter-TSS (NM_001122596)	-65.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	69.22	64.97	14.8	79.62	59.71	25.72	61.26	67.65	44.34
Merged-chr1-93081215-3	chr1	93080660	93081660	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 1 of 46)	intron (NM_001294150, intron 1 of 46)	1320.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	5.15	2.76	1.85	3.37	2.8	0.0	5.28	3.98	1.87
Merged-chr7-16259187-4	chr7	16258678	16259678	+	944.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007577, exon 2 of 3)	5' UTR (NM_007577, exon 2 of 3)	160.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	148.73	167.73	135.04	118.08	102.17	167.99	89.78	100.37	99.3
Merged-chr10-115332616-1	chr10	115332116	115333116	+	944.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-17025.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	8.01	3.23	3.7	14.17	8.4	11.25	8.45	4.86	3.75
Merged-chr17-87260983-1	chr17	87260483	87261483	+	944.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139295, intron 1 of 3)	ORR1A2-int|LTR|ERVL-MaLR	4964.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	6.86	7.83	9.25	7.42	7.46	4.82	21.12	6.63	5.0
Merged-chr5-143050458-3	chr5	143049982	143050982	+	944.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	PB1D11|SINE|Alu	62538.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	48.62	81.1	83.25	53.98	56.91	45.01	55.98	58.81	47.46
Merged-chr7-80500341-3	chr7	80499818	80500818	+	944.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	34680.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	26.31	16.13	22.2	30.36	22.86	19.29	29.57	26.97	11.87
Merged-chr3-27081497-4	chr3	27081011	27082011	+	944.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72343.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	6.86	8.29	5.55	6.75	5.13	11.25	7.39	3.54	3.75
Merged-chr2-4573503-3	chr2	4573011	4574011	+	944.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 3 of 11)	MTD|LTR|ERVL-MaLR	13757.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	46.91	55.75	56.42	58.7	50.85	73.95	59.15	62.35	50.59
Merged-chr11-79623739-3	chr11	79623249	79624249	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003283)	promoter-TSS (NR_003283)	-586.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	151.59	161.27	53.65	170.7	149.75	106.9	132.02	152.55	68.7
Merged-chr18-39517355-3	chr18	39516847	39517847	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30102.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	9.15	9.68	11.1	19.57	10.26	9.65	22.18	11.94	11.87
Merged-chr9-65493088-3	chr9	65492606	65493606	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30405.0	NM_001357813	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	11.44	10.14	0.0	15.52	13.06	9.65	12.67	9.29	6.25
Merged-chr6-146172436-3	chr6	146171916	146172916	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 50 of 56)	intron (NM_019923, intron 50 of 56)	238294.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	21.17	30.87	20.35	26.99	27.52	36.17	34.85	43.77	29.35
Merged-chr9-106356685-3	chr9	106356185	106357185	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11947.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	13.16	5.99	11.1	15.52	10.26	15.27	28.52	13.71	16.24
Merged-chr6-135235829-2	chr6	135235302	135236302	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028982, exon 13 of 13)	3' UTR (NM_028982, exon 13 of 13)	12082.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	12.01	6.91	17.57	24.29	12.13	21.7	3.17	2.65	3.12
Merged-chr1-75478697-3	chr1	75478206	75479206	+	944.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177056)	promoter-TSS (NM_177056)	765.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	6.86	7.37	0.0	23.62	15.86	26.53	34.85	14.59	13.74
Merged-chr17-26229958-3	chr17	26229453	26230453	+	944.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	14289.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	21.17	18.89	12.95	51.95	44.78	50.64	17.96	28.74	13.12
Merged-chr3-81039925-3	chr3	81039440	81040440	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	3524.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	52.06	53.91	42.55	66.12	42.45	47.42	44.36	47.75	28.73
Merged-chr11-46039566-3	chr11	46039062	46040062	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14940.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.86	8.75	0.0	6.75	6.06	14.47	39.08	32.72	31.85
Merged-chr11-118379751-3	chr11	118379153	118380153	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22306.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	6.86	2.3	3.7	4.72	7.93	4.82	8.45	5.31	1.25
Merged-chr19-4099257-3	chr19	4098750	4099750	+	944.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075078)	promoter-TSS (NR_075078)	-748.0	NR_075078	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	65.79	54.83	46.25	70.85	48.05	53.05	52.81	59.69	45.59
Merged-chr9-45179468-3	chr9	45178963	45179963	+	944.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145403, intron 6 of 12)	intron (NM_145403, intron 6 of 12)	-16303.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	107.55	90.77	83.25	72.19	43.39	92.44	79.21	55.27	49.34
Merged-chr11-45752397-3	chr11	45751886	45752886	+	944.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55697.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	110.41	116.12	44.4	134.94	119.43	102.88	106.67	104.35	58.71
Merged-chr13-41601215-3	chr13	41600722	41601722	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4994.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	131.0	189.84	120.24	135.62	97.03	126.19	184.83	230.81	134.27
Merged-chr16-38761603-3	chr16	38761113	38762113	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	19354.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	68.65	55.29	32.37	45.21	47.58	35.37	90.83	80.47	64.95
Merged-chr9-55255844-3	chr9	55255355	55256355	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	27770.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	68.07	94.0	49.95	136.97	122.69	122.98	104.56	118.06	56.21
Merged-chr6-125385813-3	chr6	125385321	125386321	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-5317.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.58	2.76	2.77	9.45	0.93	6.43	15.84	12.82	5.0
Merged-chr4-138973550-3	chr4	138973069	138974069	+	944.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 1 of 16)	intron (NM_029857, intron 1 of 16)	664.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	296.32	280.16	160.02	260.44	262.64	248.37	260.88	268.84	116.79
Merged-chr14-87417110-4	chr14	87416600	87417600	+	944.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	CpG	517.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	118.42	109.67	97.12	127.52	110.56	133.43	136.25	84.9	82.44
Merged-chrX-37191186-3	chrX	37190668	37191668	+	944.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019443)	promoter-TSS (NM_019443)	-54.0	NM_153503	69942.0	Mm.307182	NM_153503	ENSMUSG00000036537	Rnf113a1	2810428C21Rik|Rnf113a	ring finger protein 113A1	protein-coding	21.74	17.97	7.4	21.59	18.66	18.49	21.12	21.22	14.36
Merged-chr6-118127345-3	chr6	118126841	118127841	+	944.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	11489.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	40.04	53.45	21.27	43.18	45.72	35.37	23.24	32.28	19.36
Merged-chrX-36108735-3	chrX	36108178	36109178	+	944.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3430.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	32.04	52.53	49.02	20.92	15.86	27.33	44.36	33.16	23.11
Merged-chr2-62681155-3	chr2	62680653	62681653	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145523, intron 3 of 7)	HAL1|LINE|L1	16826.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	7.44	3.69	7.4	14.17	7.0	0.0	9.51	7.96	13.74
Merged-chr3-38433715-3	chr3	38433205	38434205	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51111.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	10.3	15.67	20.35	7.42	4.2	3.22	2.11	3.1	3.75
Merged-chr9-111145714-3	chr9	111145196	111146196	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 3 of 13)	intron (NM_027742, intron 3 of 13)	27585.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	32.61	28.11	20.35	49.25	42.45	35.37	30.63	31.84	21.23
Merged-chr5-64488185-3	chr5	64487679	64488679	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11171.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	32.04	19.35	5.55	35.09	27.52	19.29	17.96	15.48	3.75
Merged-chr17-3080777-2	chr17	3080276	3081276	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 2 of 7)	intron (NR_003519, intron 2 of 7)	3407.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	12.59	11.98	0.92	12.82	15.86	3.22	2.11	0.88	4.37
Merged-chr5-136962764-3	chr5	136962267	136963267	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025562, intron 1 of 4)	intron (NM_025562, intron 1 of 4)	690.0	NM_025562	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	34.32	47.92	68.45	57.35	42.45	74.75	82.38	69.86	48.71
Merged-chr4-62282668-3	chr4	62282186	62283186	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3743.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	76.66	89.39	74.92	70.85	57.85	55.46	120.41	110.98	78.69
Merged-chr6-83043548-3	chr6	83043046	83044046	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013586, intron 4 of 13)	intron (NM_013586, intron 4 of 13)	-6165.0	NR_106007	102465630.0		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	90.96	69.12	96.2	102.56	81.64	91.63	104.56	118.5	87.43
Merged-chr5-23121485-1	chr5	23120985	23121985	+	944.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	Charlie5|DNA|hAT-Charlie	312868.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	10.87	1.84	4.62	4.72	7.93	4.82	1.06	0.0	5.62
Merged-chr6-130337584-2	chr6	130337086	130338086	+	944.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289605)	promoter-TSS (NM_001289605)	40.0	NM_001289605	16634.0	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	35.47	39.17	16.65	55.33	64.84	40.19	2.11	4.42	2.5
Merged-chr17-34883556-3	chr17	34883050	34884050	+	944.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1450.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	34.9	23.96	38.85	28.34	23.79	38.58	62.31	20.78	45.59
Merged-chr1-131698996-3	chr1	131698503	131699503	+	944.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	10308.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	38.33	54.83	39.77	18.89	19.59	20.09	66.54	54.83	35.6
Merged-chr19-34673718-2	chr19	34673218	34674218	+	944.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 5 of 6)	intron (NM_172838, intron 5 of 6)	32829.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	8.01	8.29	9.25	12.82	7.46	12.06	4.22	1.77	1.25
Merged-chr19-46698359-3	chr19	46697858	46698858	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	8452.0	NM_025563	66439.0	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	34.32	27.65	24.97	49.25	34.52	35.37	27.46	18.13	14.36
Merged-chr9-56264482-3	chr9	56264002	56265002	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103432.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	197.93	275.55	150.77	198.37	257.98	184.87	202.79	285.64	122.41
Merged-chr17-66514541-3	chr17	66514017	66515017	+	944.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024448, intron 1 of 5)	intron (NM_024448, intron 1 of 5)	5153.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	20.59	11.06	10.17	12.14	12.13	16.88	15.84	11.05	3.75
Merged-chr8-107271034-3	chr8	107270535	107271535	+	944.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	intron (NR_039557, intron 2 of 3).3	14871.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	33.75	28.57	14.8	40.48	41.52	22.51	33.8	29.63	13.74
Merged-chr12-3691187-3	chr12	3690705	3691705	+	944.388916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	RLTR10D2|LTR|ERVK	-115775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	12.01	10.6	7.4	20.24	30.32	12.86	23.24	37.58	34.35
Merged-chr17-71136821-3	chr17	71136321	71137321	+	944.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-46711.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	76.66	49.3	48.1	73.54	53.65	57.87	58.09	77.82	38.1
Merged-chr2-27676916-3	chr2	27676406	27677406	+	944.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-295.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	38.9	40.09	48.1	51.28	39.65	36.17	46.47	31.39	16.86
Merged-chr6-91582471-1	chr6	91581971	91582971	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	66436.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.86	5.99	0.0	6.75	4.67	4.82	0.0	0.0	7.49
Merged-chr9-31926032-3	chr9	31925546	31926546	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12761.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	4.58	2.3	3.7	4.72	3.73	3.22	4.22	2.65	3.75
Merged-chr11-120990977-1	chr11	120990477	120991477	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_139059, exon 1 of 9)	exon (NM_139059, exon 1 of 9)	356.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	343.23	342.36	290.44	326.56	304.16	237.12	344.32	268.4	144.89
Merged-chr2-128444330-3	chr2	128443819	128444819	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14968.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	42.9	42.39	18.5	13.49	17.73	14.47	71.82	45.54	29.98
Merged-chr19-44104603-3	chr19	44104106	44105106	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162410, intron 1 of 20)	intron (NM_001162410, intron 1 of 20)	2871.0	NM_007700	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	25.17	17.05	18.5	22.27	17.73	19.29	42.25	22.99	14.99
Merged-chr15-98872236-3	chr15	98871780	98872780	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1075.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	135.0	225.78	196.09	136.29	160.01	189.69	127.8	164.93	146.14
Merged-chr17-57059586-1	chr17	57059086	57060086	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025877, exon 1 of 10)	exon (NM_025877, exon 1 of 10)	277.0	NM_025877	66972.0	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	9.72	5.99	1.85	12.82	7.0	8.04	4.22	2.65	1.25
Merged-chr3-47885639-1	chr3	47885139	47886139	+	944.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141120.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	1.72	3.69	0.0	0.67	1.4	0.0	0.0	1.77	0.0
Merged-chr3-16181394-3	chr3	16180901	16181901	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-1764.0	NM_001358043	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	57.78	70.04	48.1	68.15	93.3	68.32	28.52	47.31	32.48
Merged-chr7-98178916-3	chr7	98178422	98179422	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007602)	promoter-TSS (NM_007602)	-648.0	NM_007602	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	62.35	68.2	52.72	60.72	45.25	35.37	106.67	72.07	51.21
Merged-chr16-58712401-3	chr16	58711913	58712913	+	944.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6311.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	33.75	41.47	32.37	41.83	43.39	57.07	36.97	30.07	30.6
Merged-chr4-3913661-3	chr4	3913162	3914162	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019969, intron 2 of 5)	intron (NM_019969, intron 2 of 5)	24743.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	8.58	5.07	10.17	8.77	7.0	11.25	12.67	7.96	2.5
Merged-chr2-24355554-3	chr2	24355071	24356071	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10200.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	29.17	31.79	55.5	29.01	23.79	56.27	46.47	47.75	36.22
Merged-chr16-44016388-3	chr16	44015886	44016886	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153528)	promoter-TSS (NM_153528)	50.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	8.58	18.43	11.1	12.14	8.86	4.82	13.73	15.92	14.99
Merged-chr14-55590189-3	chr14	55589699	55590699	+	944.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029855, intron 2 of 10)	MIR3|SINE|MIR	822.0	NM_011190	19188.0	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	98.97	92.16	78.62	83.66	49.92	78.77	94.0	114.96	71.82
Merged-chr19-9986838-1	chr19	9986338	9987338	+	944.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011913, exon 10 of 12)	exon (NM_011913, exon 10 of 12)	4192.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	22.88	23.04	21.27	34.41	26.59	34.56	21.12	15.92	23.11
Merged-chr17-65608946-3	chr17	65608446	65609446	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	Lx8|LINE|L1	4609.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	20.59	23.96	13.87	15.52	13.06	28.13	27.46	20.34	18.74
Merged-chr3-21938232-3	chr3	21937726	21938726	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138426.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	56.06	32.25	42.55	51.95	30.79	36.97	29.57	36.26	16.24
Merged-chr17-23960544-3	chr17	23960042	23961042	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5269.0	NM_001077421	638345.0	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	6.86	3.23	1.85	6.07	2.8	4.82	13.73	3.98	3.12
Merged-chr13-78236856-3	chr13	78236350	78237350	+	944.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045195)	TTS (NR_045195)	-37977.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	73.22	83.86	49.95	60.72	71.84	61.89	81.33	91.09	31.85
Merged-chrX-167329282-3	chrX	167328779	167329779	+	944.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MER31B|LTR|ERV1	1292.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	112.69	108.28	59.2	147.76	101.23	77.16	144.7	150.78	70.57
Merged-chr1-160792922-3	chr1	160792381	160793381	+	944.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013862)	promoter-TSS (NM_013862)	57.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	5.72	3.69	7.4	25.64	15.86	12.86	9.51	2.65	2.5
Merged-chr2-124927564-3	chr2	124927075	124928075	+	944.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140552.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	113.84	112.89	77.7	104.58	125.49	80.38	67.6	79.59	51.84
Merged-chr12-85519750-3	chr12	85519244	85520244	+	944.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45854.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	16.59	9.22	16.65	20.92	18.66	27.33	10.56	7.52	4.37
Merged-chr6-134531492-3	chr6	134530986	134531986	+	944.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	35427.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	58.35	88.47	32.37	74.89	58.31	66.71	84.49	73.4	26.23
Merged-chrX-142389497-3	chrX	142388985	142389985	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	1050.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	102.4	137.31	99.89	96.48	97.03	72.34	125.69	137.96	79.32
Merged-chr15-6602633-3	chr15	6602129	6603129	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	22782.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	155.6	149.29	92.5	119.43	81.64	123.78	113.01	84.45	88.06
Merged-chr8-75104553-3	chr8	75104068	75105068	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4941.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	20.59	19.35	25.9	23.62	7.93	22.51	14.79	8.4	21.23
Merged-chr11-101115768-3	chr11	101115271	101116271	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155071, intron 1 of 6)	intron (NR_155071, intron 1 of 6)	4070.0	NM_026501	67998.0	Mm.33881	NM_026501	ENSMUSG00000017802	Retreg3	1300010M03Rik|4933404C01Rik|AI551748|Fam134c	reticulophagy regulator family member 3	protein-coding	53.77	51.15	27.75	55.33	35.92	61.09	92.94	82.69	56.21
Merged-chr4-143142045-3	chr4	143141534	143142534	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 7 of 7)	intron (NM_001256380, intron 7 of 7)	-5872.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	4.0	7.83	5.55	7.42	8.86	3.22	10.56	9.29	9.37
Merged-chr1-131548724-3	chr1	131548216	131549216	+	944.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20813.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	31.46	21.2	40.7	33.74	30.79	25.72	44.36	49.08	30.6
Merged-chr4-14864740-2	chr4	14864223	14865223	+	944.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	504.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	169.9	133.17	133.19	158.56	157.68	132.63	167.93	148.57	84.31
Merged-chr2-181090338-3	chr2	181089844	181090844	+	944.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003824, intron 10 of 16)	intron (NM_001003824, intron 10 of 16)	44945.0	NM_001006668	16536.0	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	8.58	3.23	4.62	4.05	1.87	4.82	14.79	6.19	3.75
Merged-chr2-124577103-3	chr2	124576585	124577585	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-33211.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	23.45	26.73	6.47	16.87	18.19	32.15	24.29	11.05	13.12
Merged-chr5-90414804-3	chr5	90414291	90415291	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46079.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	18.31	12.9	0.92	21.59	17.73	7.23	15.84	9.29	8.74
Merged-chr8-126844698-3	chr8	126844217	126845217	+	944.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4303.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	199.65	155.28	120.24	222.66	150.68	204.97	147.87	145.92	78.07
Merged-chr10-80696128-3	chr10	80695620	80696620	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5700.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	217.95	188.92	80.47	184.87	128.76	108.51	162.65	223.74	107.42
Merged-chr15-100665145-3	chr15	100664639	100665639	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	4361.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	44.05	38.71	42.55	48.58	31.72	49.83	40.14	39.8	29.98
Merged-chr12-38864089-3	chr12	38863542	38864542	+	944.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	(TG)n|Simple_repeat|Simple_repeat	80331.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	68.07	58.52	49.02	87.04	45.72	81.18	62.31	45.1	58.08
Merged-chr1-44162611-1	chr1	44162111	44163111	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011729, intron 6 of 14)	intron (NM_011729, intron 6 of 14)	14867.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	8.01	4.61	1.85	18.22	7.0	17.68	11.62	9.29	9.37
Merged-chr1-57850038-1	chr1	57849538	57850538	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	4467.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	15.45	7.83	16.65	39.13	31.72	20.09	27.46	11.94	3.75
Merged-chr14-60251957-2	chr14	60251418	60252418	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170591)	promoter-TSS (NM_170591)	-439.0	NM_001362439	71844.0	Mm.258051	NM_170591	ENSMUSG00000114797	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	277.45	282.92	244.19	225.36	292.97	249.98	256.65	302.88	146.76
Merged-chr9-110888017-3	chr9	110887525	110888525	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 8 of 25)	intron (NR_153354, intron 8 of 25)	7703.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	70.93	43.77	74.0	76.24	33.12	63.5	38.02	30.07	33.72
Merged-chr3-31093359-1	chr3	31092859	31093859	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	82.95	54.83	40.7	65.45	41.99	49.03	88.72	96.39	31.23
Merged-chr4-98924229-3	chr4	98923721	98924721	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146144, exon 1 of 9)	5' UTR (NM_146144, exon 1 of 9)	411.0	NM_001356424	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	97.82	88.01	160.02	82.99	73.71	98.06	120.41	96.83	76.82
Merged-chr1-156532212-3	chr1	156531715	156532715	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV-int|LTR|ERVK	-26572.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	24.03	27.19	14.8	35.09	27.06	24.11	66.54	88.43	36.85
Merged-chr18-49576493-1	chr18	49575993	49576993	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53204.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	5.72	3.23	3.7	6.75	3.27	6.43	6.34	0.88	12.49
Merged-chr17-35590606-2	chr17	35590124	35591124	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23139.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	6.29	6.91	0.92	14.84	4.67	0.0	5.28	1.33	5.0
Merged-chr5-125389323-4	chr5	125388795	125389795	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019639, intron 1 of 1)	CpG	722.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	292.32	145.15	123.94	234.8	140.42	159.15	250.32	239.65	114.29
Merged-chr7-62400342-1	chr7	62399842	62400842	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19797.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	1.72	3.69	0.0	4.05	7.46	1.61	4.22	1.33	0.62
Merged-chr1-89580157-3	chr1	89579652	89580652	+	944.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	GC_rich|Low_complexity|Low_complexity	103740.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	35.47	19.81	22.2	31.04	12.6	22.51	17.96	6.19	7.49
Merged-chr6-114358451-1	chr6	114357951	114358951	+	944.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-39485.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	8.01	8.75	3.7	9.45	3.27	6.43	4.22	4.42	1.25
Merged-chr13-3373168-3	chr13	3372699	3373699	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105104.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	25.74	60.36	15.72	53.98	108.23	24.92	21.12	45.54	14.99
Merged-chr14-55763253-3	chr14	55762749	55763749	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020490)	TTS (NM_020490)	1821.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	109.83	117.96	90.65	122.12	90.04	94.85	113.01	100.81	101.8
Merged-chr7-115018619-3	chr7	115018124	115019124	+	943.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67350.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	25.17	28.57	23.12	10.8	11.66	9.65	30.63	19.01	17.49
Merged-chr18-61211027-2	chr18	61210541	61211541	+	943.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007885, intron 1 of 3)	intron (NM_007885, intron 1 of 3)	555.0	NM_007885	13521.0	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	97.82	134.09	117.47	121.45	125.49	138.25	166.88	185.27	81.81
Merged-chr12-21111678-2	chr12	21111178	21112178	+	943.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135192)	promoter-TSS (NM_001135192)	-78.0	NM_001004364	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	2.29	0.92	0.0	4.72	0.93	3.22	2.11	0.0	1.25
Merged-chr13-30714812-3	chr13	30714330	30715330	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34403.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	9.15	12.9	16.65	9.45	13.06	24.92	6.34	7.07	9.37
Merged-chr9-56265678-3	chr9	56265191	56266191	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	Lx7|LINE|L1	-104621.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	114.41	115.2	65.67	156.53	124.09	98.87	86.61	91.97	43.72
Merged-chrX-167227385-3	chrX	167226879	167227879	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18161.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	64.64	57.6	49.95	68.15	35.45	57.87	73.93	68.09	63.08
Merged-chr9-45464418-3	chr9	45463924	45464924	+	943.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-33192.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	26.89	17.51	24.05	23.62	10.26	13.66	103.51	103.02	41.84
Merged-chr5-12161407-3	chr5	12160916	12161916	+	943.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221750.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	17.73	25.8	13.87	11.47	26.12	27.33	28.52	22.55	23.11
Merged-chr10-62206213-3	chr10	62205702	62206702	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	intron (NM_197996, intron 1 of 7)	-11975.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	46.34	37.32	24.97	56.68	24.72	53.85	65.48	38.47	29.35
Merged-chr19-47399183-3	chr19	47398686	47399686	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	65225.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	58.92	49.3	40.7	63.42	47.12	26.53	48.58	29.18	16.24
Merged-chr6-58606921-3	chr6	58606430	58607430	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	intron (NM_011920, intron 1 of 15)	10258.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	12.59	12.44	7.4	6.75	9.33	12.86	6.34	9.29	10.62
Merged-chr3-8632015-3	chr3	8631510	8632510	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153352, intron 2 of 2)	intron (NR_153352, intron 2 of 2)	3959.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	4.0	3.23	9.25	6.75	3.27	10.45	1.06	1.77	2.5
Merged-chr9-102520416-3	chr9	102519927	102520927	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024291, intron 3 of 10)	intron (NM_024291, intron 3 of 10)	14289.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	9.72	11.06	9.25	10.8	2.33	8.04	8.45	0.88	9.37
Merged-chr1-55529145-4	chr1	55528655	55529655	+	943.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123209.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	18.88	16.59	15.72	56.0	47.12	50.64	19.01	9.73	19.98
Merged-chr9-95641345-2	chr9	95640833	95641833	+	943.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	3705.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	35.47	37.78	38.85	67.47	40.59	53.05	68.65	64.11	33.1
Merged-chr6-53390618-3	chr6	53390116	53391116	+	943.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 4 of 10)	L4_B_Mam|LINE|RTE-X	103313.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	45.76	58.06	46.25	46.56	45.72	76.36	61.26	59.69	38.1
Merged-chr12-3780836-3	chr12	3780332	3781332	+	943.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007886, intron 18 of 18)	intron (NM_007886, intron 18 of 18)	-26148.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	76.66	63.13	78.62	124.82	87.7	122.18	125.69	144.15	46.22
Merged-chr2-84529339-3	chr2	84528841	84529841	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22468.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	92.1	89.39	70.3	78.94	54.11	58.68	82.38	82.24	40.59
Merged-chr9-20740606-3	chr9	20740121	20741121	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	intron (NM_001357639, intron 1 of 5)	5675.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	5.15	2.76	0.0	2.02	2.33	2.41	1.06	2.21	7.49
Merged-chr3-152428744-3	chr3	152428235	152429235	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	32051.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	37.18	29.03	16.65	46.56	37.79	12.06	24.29	12.38	16.86
Merged-chr8-66436997-3	chr8	66436505	66437505	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 6 of 7)	intron (NM_175188, intron 6 of 7)	49525.0	NM_025465	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	38.33	41.01	66.6	36.43	34.99	61.89	48.58	29.63	35.6
Merged-chr3-89266582-3	chr3	89266064	89267064	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026767, exon 1 of 2)	5' UTR (NM_026767, exon 1 of 2)	103.0	NM_026767	68563.0	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	55.49	63.59	25.9	49.93	61.11	55.46	60.2	57.92	31.23
Merged-chr6-108569624-3	chr6	108569130	108570130	+	943.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53537.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	17.73	7.83	13.87	18.89	17.26	21.7	20.07	16.8	15.61
Merged-chr1-134719871-3	chr1	134719374	134720374	+	943.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	10574.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	6.29	5.07	5.55	2.02	4.2	6.43	7.39	3.1	0.62
Merged-chr12-73682895-3	chr12	73682393	73683393	+	943.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	98097.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	29.75	31.33	16.65	37.11	29.86	52.25	32.74	19.01	23.73
Merged-chr11-114858840-1	chr11	114858340	114859340	+	943.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	6810.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	4.58	3.23	0.0	4.72	7.0	11.25	7.39	6.63	5.0
Merged-chr4-105207139-3	chr4	105206624	105207624	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 2 of 5)	intron (NM_080555, intron 2 of 5)	49777.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	9.15	7.37	1.85	5.4	10.73	8.04	13.73	8.84	9.37
Merged-chr17-31073961-1	chr17	31073461	31074461	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	16267.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	199.65	173.72	123.94	304.3	227.66	253.19	268.27	290.95	103.67
Merged-chr4-53440858-1	chr4	53440358	53441358	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	CpG	445.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	81.8	33.18	28.67	78.27	20.99	35.37	50.7	13.71	13.74
Merged-chr16-87737411-1	chr16	87736911	87737911	+	943.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38457.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.14	3.23	5.55	6.75	2.33	11.25	2.11	0.88	2.5
Merged-chr17-71094022-3	chr17	71093521	71094521	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	74464.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	32.04	26.26	24.05	64.1	43.85	43.4	28.52	40.68	26.85
Merged-chr16-78265200-3	chr16	78264699	78265699	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9745.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	76.08	75.11	39.77	130.22	147.42	88.42	149.98	159.62	58.08
Merged-chr8-33929912-3	chr8	33929339	33930339	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286168)	promoter-TSS (NM_001286168)	24.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	112.69	106.9	50.87	165.31	97.97	127.8	370.72	210.91	153.01
Merged-chr17-26465214-3	chr17	26464709	26465709	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43263.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	14.87	18.89	0.92	157.88	153.01	124.59	163.71	182.62	121.78
Merged-chr4-118360076-3	chr4	118359570	118360570	+	943.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026601)	promoter-TSS (NM_026601)	71.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	107.55	83.4	114.69	165.31	203.86	188.89	52.81	41.12	26.23
Merged-chr1-135634089-2	chr1	135633596	135634596	+	943.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	36320.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	9.72	6.45	7.4	96.48	64.84	98.87	57.03	65.44	46.22
Merged-chr9-14832275-2	chr9	14831782	14832782	+	943.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018736, intron 18 of 19)	intron (NM_018736, intron 18 of 19)	-27928.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.0	7.37	1.85	6.07	7.0	4.82	0.0	1.77	3.12
Merged-chr1-177261030-3	chr1	177260522	177261522	+	943.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12255.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	76.08	96.76	69.37	83.66	77.44	102.88	89.78	95.95	78.69
Merged-chr1-181257071-4	chr1	181256586	181257586	+	943.642822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45108.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	86.38	120.73	136.89	94.46	106.36	151.92	106.67	107.45	83.69
Merged-chr17-84293369-3	chr17	84292884	84293884	+	943.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-105437.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	62.35	71.42	31.45	77.59	59.71	61.09	72.88	61.9	58.71
Merged-chr11-19979518-3	chr11	19979011	19980011	+	943.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	55069.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	9.15	5.53	7.4	9.45	13.06	10.45	10.56	0.44	5.0
Merged-chr2-164857557-5	chr2	164857030	164858030	+	943.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011125, intron 1 of 15)	CpG-8831	178.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	95.53	88.93	92.5	116.05	91.44	103.69	127.8	122.04	66.82
Merged-chr4-43047414-3	chr4	43046905	43047905	+	943.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1185.0	NM_172691	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	57.78	36.4	18.5	54.65	21.46	25.72	19.01	18.13	7.49
Merged-chr13-58443943-3	chr13	58443435	58444435	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40592.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	15.45	10.14	7.4	14.84	5.13	8.04	7.39	7.96	6.25
Merged-chr14-54651246-3	chr14	54650723	54651723	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038053, exon 2 of 6)	non-coding (NR_038053, exon 2 of 6)	712.0	NR_038053	75913.0	Mm.474799	NR_038053		4930579G18Rik	-	RIKEN cDNA 4930579G18 gene	ncRNA	6.29	6.91	2.77	4.72	2.8	9.65	6.34	2.21	3.75
Merged-chr7-80143520-3	chr7	80143024	80144024	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28174.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	65.79	67.74	63.82	60.05	55.51	59.48	50.7	57.92	31.23
Merged-chr19-58107043-3	chr19	58106553	58107553	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	MIRc|SINE|MIR	55886.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	31.46	37.78	30.52	29.01	30.32	21.7	38.02	23.43	28.73
Merged-chr1-36922273-3	chr1	36921784	36922784	+	943.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	17243.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	102.4	119.8	76.77	112.0	106.36	61.89	106.67	102.14	74.94
Merged-chr19-46528835-4	chr19	46528301	46529301	+	943.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27153.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	39.47	28.11	17.57	69.5	39.65	42.6	14.79	10.61	8.12
Merged-chr2-11212176-3	chr2	11211672	11212672	+	943.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	39790.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.58	4.61	3.7	3.37	6.06	7.23	7.39	1.77	2.5
Merged-chr3-98084068-4	chr3	98083508	98084508	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 5 of 33)	intron (NM_010928, intron 5 of 33)	70470.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	65.79	47.92	60.12	80.97	59.25	82.79	86.61	106.12	39.35
Merged-chr11-51999977-3	chr11	51999445	52000445	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009458, intron 1 of 5)	intron (NM_009458, intron 1 of 5)	521.0	NM_009458	22210.0	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	299.76	269.1	200.71	270.56	268.71	175.23	276.72	291.39	144.27
Merged-chr9-74952241-3	chr9	74951740	74952740	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113283)	promoter-TSS (NM_001113283)	-640.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	56.63	69.58	25.9	99.86	90.04	57.07	116.18	149.89	83.06
Merged-chr7-75610671-2	chr7	75610193	75611193	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	155159.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	70.93	70.96	18.5	65.45	47.12	31.35	9.51	2.21	1.25
Merged-chr7-19920594-3	chr7	19920105	19921105	+	943.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027514, intron 1 of 7)	intron (NM_027514, intron 1 of 7)	538.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	51.48	69.58	79.55	83.66	64.38	90.83	103.51	80.47	42.47
Merged-chr7-19832035-3	chr7	19831536	19832536	+	943.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9281.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	44.05	30.41	29.6	57.35	35.92	31.35	44.36	28.3	28.1
Merged-chr14-52014880-3	chr14	52014375	52015375	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253695)	promoter-TSS (NM_001253695)	-317.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	90.96	61.75	49.02	82.99	64.38	73.95	100.34	68.54	51.84
Merged-chr8-120119149-3	chr8	120118663	120119663	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	5011.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	30.32	20.27	23.12	33.06	37.79	58.68	38.02	34.93	16.86
Merged-chr10-8768873-3	chr10	8768375	8769375	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	117195.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	25.17	23.96	16.65	63.42	30.79	38.58	24.29	22.11	18.11
Merged-chr5-130075068-3	chr5	130074538	130075538	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	intron (NM_013837, intron 1 of 5)	1712.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	9.15	5.53	1.85	5.4	2.8	3.22	5.28	5.75	5.62
Merged-chr5-122398030-3	chr5	122397543	122398543	+	943.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	6165.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	63.5	55.75	65.67	69.5	48.98	52.25	68.65	63.67	46.22
Merged-chr11-31713356-3	chr11	31712865	31713865	+	943.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41503.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	118.99	112.89	92.5	109.98	121.29	110.92	88.72	98.6	61.2
Merged-chr17-17601112-3	chr17	17600605	17601605	+	943.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	B1F|SINE|Alu	23384.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	93.82	112.43	63.82	87.71	98.43	74.75	123.57	118.06	83.06
Merged-chr4-126201884-3	chr4	126201383	126202383	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356456)	promoter-TSS (NM_001356456)	827.0	NM_001356455	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	108.69	121.65	109.14	90.41	77.44	77.16	143.64	150.78	98.68
Merged-chr3-8685418-3	chr3	8684964	8685964	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18426.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.44	5.99	3.7	8.1	9.33	1.61	1.06	3.1	11.87
Merged-chr16-76765270-3	chr16	76764788	76765788	+	943.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	13804.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	61.78	67.27	40.7	64.77	55.98	58.68	119.35	114.52	38.72
Merged-chr15-25302826-2	chr15	25302325	25303325	+	943.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110939.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	188.78	223.02	109.14	237.5	249.12	155.13	219.69	278.12	122.41
Merged-chr17-33758132-2	chr17	33757632	33758632	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008997, intron 1 of 4)	intron (NM_008997, intron 1 of 4)	2354.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	21.74	15.21	34.22	16.19	11.2	13.66	10.56	7.96	11.87
Merged-chr6-108784328-2	chr6	108783815	108784815	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	intron (NM_026011, intron 1 of 6)	1256.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	38.33	40.09	20.35	49.93	20.53	38.58	51.75	44.66	28.1
Merged-chr15-35515704-2	chr15	35515199	35516199	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 17 of 61)	intron (NM_177151, intron 17 of 61)	144153.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	4.0	5.07	5.55	12.14	11.66	14.47	9.51	2.21	5.0
Merged-chr3-26932631-2	chr3	26932146	26933146	+	943.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029150, intron 10 of 10)	intron (NM_029150, intron 10 of 10)	221208.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	6.86	4.15	7.4	8.77	3.27	9.65	20.07	19.9	13.74
Merged-chr2-144550791-1	chr2	144550291	144551291	+	943.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015754)	promoter-TSS (NM_015754)	68.0	NM_015754	26450.0	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9, serine hydrolase	protein-coding	11.44	14.75	11.1	18.89	18.66	14.47	14.79	18.57	14.99
Merged-chr8-88279770-3	chr8	88279262	88280262	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	-3230.0	NM_001109756	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	5.15	7.83	1.85	10.8	4.67	8.04	13.73	9.29	14.36
Merged-chr14-120303148-1	chr14	120302648	120303648	+	943.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-3304.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	11.44	11.06	7.4	8.77	10.26	11.25	14.79	11.5	7.49
Merged-chr7-110097317-3	chr7	110096752	110097752	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24807.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	42.9	50.69	45.32	79.62	59.71	32.15	69.71	49.96	39.35
Merged-chr8-85072128-3	chr8	85071651	85072651	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039514, intron 1 of 8)	intron (NM_001039514, intron 1 of 8)	394.0	NM_001039514	330817.0	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	253.42	248.36	248.81	230.08	254.71	233.9	177.44	206.93	103.67
Merged-chr6-86654710-3	chr6	86654213	86655213	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	14446.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	21.74	13.36	14.8	29.01	18.66	9.65	27.46	15.48	9.37
Merged-chrX-20938503-3	chrX	20937996	20938996	+	943.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007922, intron 2 of 5)	MTD|LTR|ERVL-MaLR	-6941.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	15.45	13.36	13.87	9.45	5.13	8.04	17.96	14.15	6.25
Merged-chr15-79436760-3	chr15	79436248	79437248	+	943.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 2 of 10)	intron (NM_001359863, intron 2 of 10)	5070.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	24.03	11.52	24.05	18.89	12.6	5.63	15.84	11.05	6.25
Merged-chr15-101133255-3	chr15	101132731	101133731	+	943.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277259, intron 3 of 11)	intron (NM_001277259, intron 3 of 11)	4709.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	113.84	112.43	102.67	101.21	75.57	40.99	83.44	66.33	51.84
Merged-chr5-107869863-3	chr5	107869365	107870365	+	943.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	intron (NM_007964, intron 1 of 17)	5242.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	24.03	32.72	24.05	18.22	17.26	16.08	22.18	24.76	24.36
Merged-chrX-121429283-1	chrX	121428783	121429783	+	943.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	968102.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	5.72	5.99	1.85	7.42	10.73	18.49	3.17	0.0	2.5
Merged-chr2-114137774-2	chr2	114137280	114138280	+	943.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290788, intron 16 of 33)	L1M3|LINE|L1	12790.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	63.5	80.18	63.82	47.23	40.12	29.74	2.11	0.88	5.62
Merged-chr4-136898044-4	chr4	136897623	136898623	+	943.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007572, intron 1 of 2)	(CCCTAA)n|Simple_repeat|Simple_repeat	721.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	299.76	228.55	274.71	249.65	192.67	222.65	371.78	328.53	171.75
Merged-chr5-65990253-3	chr5	65989749	65990749	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027961, intron 5 of 6)	intron (NR_027961, intron 5 of 6)	14036.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	14.87	16.59	18.5	31.04	20.99	35.37	48.58	36.7	21.23
Merged-chr19-5705122-3	chr19	5704609	5705609	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010609, intron 1 of 2)	intron (NM_010609, intron 1 of 2)	638.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	8.58	8.29	14.8	16.19	7.46	14.47	12.67	11.5	16.24
Merged-chr7-73596599-3	chr7	73596089	73597089	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-38194.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	116.7	110.59	96.2	96.48	106.83	82.79	79.21	94.62	52.46
Merged-chr7-116336376-3	chr7	116335878	116336878	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011083)	TTS (NM_011083)	-2188.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	12.59	12.44	19.42	9.45	9.8	7.23	9.51	8.84	8.74
Merged-chr16-21319072-3	chr16	21318559	21319559	+	943.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14297.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	49.2	17.51	13.87	45.88	21.46	12.86	30.63	24.76	14.99
Merged-chr10-68192978-1	chr10	68192478	68193478	+	943.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 3 of 9)	intron (NM_023598, intron 3 of 9)	85748.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	44.05	40.55	12.95	81.64	67.18	76.36	12.67	10.61	2.5
Merged-chr12-112873735-3	chr12	112873211	112874211	+	943.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12795.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	3.43	5.99	4.62	18.89	6.06	3.22	9.51	5.75	6.87
Merged-chr9-113026815-3	chr9	113026339	113027339	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	560313.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	12.59	8.75	3.7	22.27	18.66	26.53	10.56	11.5	8.74
Merged-chr17-31583640-1	chr17	31583140	31584140	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027493, intron 2 of 11)	intron (NR_027493, intron 2 of 11)	18867.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	17.73	8.75	25.9	5.4	6.53	4.82	6.34	3.54	5.0
Merged-chr4-145242926-3	chr4	145242450	145243450	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	3920.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	68.07	98.15	50.87	56.68	52.25	102.08	94.0	78.71	68.7
Merged-chr3-107931844-3	chr3	107931358	107932358	+	943.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026672)	promoter-TSS (NM_026672)	-41.0	NM_026672	68312.0	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	4.58	2.3	7.4	10.8	4.2	20.9	6.34	3.54	8.74
Merged-chr1-62725105-2	chr1	62724573	62725573	+	943.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	21756.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	47.48	33.64	29.6	18.89	11.66	6.43	7.39	3.98	12.49
Merged-chr2-80168308-2	chr2	80167804	80168804	+	943.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38646.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.72	1.84	1.85	3.37	2.33	3.22	6.34	3.54	3.12
Merged-chr7-98341583-3	chr7	98341084	98342084	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19704.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	72.08	38.25	18.5	54.65	46.65	30.54	28.52	37.14	19.98
Merged-chr13-5845339-3	chr13	5844844	5845844	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12748.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	240.26	365.86	160.02	250.99	378.34	233.9	250.32	343.12	162.38
Merged-chr16-59560132-3	chr16	59559643	59560643	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4391.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	37.76	52.53	23.12	31.71	41.52	31.35	53.87	77.82	55.58
Merged-chr4-95784338-3	chr4	95783828	95784828	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 8 of 10)	L2|LINE|L2	182707.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	17.73	11.52	6.47	19.57	11.66	12.86	22.18	20.34	19.36
Merged-chr1-162574763-3	chr1	162574249	162575249	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 2 of 7)	intron (NM_001356527, intron 2 of 7)	3921.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	82.95	54.83	27.75	147.76	99.37	122.18	88.72	93.74	54.33
Merged-chr1-170898603-3	chr1	170898101	170899101	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13061.0	NM_023173	80915.0	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	62.35	52.99	40.7	89.06	72.31	83.59	95.06	92.86	58.71
Merged-chr2-30718464-3	chr2	30717949	30718949	+	943.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	155.6	106.44	30.52	236.83	194.53	106.1	46.47	44.66	13.12
Merged-chr1-171111348-5	chr1	171110841	171111841	+	943.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10320.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	44.62	50.69	29.6	66.12	40.12	49.83	48.58	64.11	44.97
Merged-chr17-67352555-3	chr17	67351967	67352967	+	943.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	1992.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	272.87	320.71	119.32	273.26	313.49	156.74	323.19	358.16	151.14
Merged-chr9-65538398-3	chr9	65537916	65538916	+	943.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41671.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	98.97	86.17	96.2	61.4	46.65	58.68	130.97	99.05	83.69
Merged-chr12-40218580-3	chr12	40218085	40219085	+	943.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	4226.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	14.87	10.6	0.0	16.19	7.0	3.22	10.56	16.8	3.75
Merged-chr2-71843509-3	chr2	71843014	71844014	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008397, intron 20 of 25)	intron (NM_008397, intron 20 of 25)	-29710.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	5.72	5.07	11.1	11.47	7.46	19.29	42.25	51.29	37.47
Merged-chr12-41096247-1	chr12	41095747	41096747	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 3 of 6)	ORR1D2|LTR|ERVL-MaLR	72157.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	1.14	5.07	1.85	2.02	3.73	4.82	6.34	2.65	1.25
Merged-chr11-8569879-3	chr11	8569352	8570352	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	94683.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	22.31	16.59	25.9	15.52	8.86	18.49	3.17	6.19	6.25
Merged-chr1-52765383-3	chr1	52764900	52765900	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38042.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	22.88	18.43	12.02	61.4	49.45	79.58	47.53	43.33	25.61
Merged-chr6-129423858-3	chr6	129423374	129424374	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172732, exon 6 of 6)	3' UTR (NM_172732, exon 6 of 6)	15012.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	15.45	14.75	21.27	19.57	8.4	8.04	21.12	13.71	13.74
Merged-chr12-59129797-1	chr12	59129297	59130297	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165254)	promoter-TSS (NM_001165254)	49.0	NM_001165254	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	52.06	86.17	47.17	80.29	67.64	61.09	73.93	73.84	48.71
Merged-chr3-148248822-3	chr3	148248341	148249341	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	705794.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.0	11.06	12.95	7.42	7.46	11.25	4.22	2.65	6.25
Merged-chr4-150472721-2	chr4	150472223	150473223	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179451.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	80.09	82.02	22.2	97.16	83.04	53.85	30.63	37.58	21.86
Merged-chr2-174674159-3	chr2	174673671	174674671	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30637.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	9.15	14.75	16.65	6.75	7.46	6.43	14.79	26.97	14.36
Merged-chr18-33816705-1	chr18	33816205	33817205	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013512, intron 18 of 23)	intron (NM_013512, intron 18 of 23)	21813.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	6.29	5.07	9.25	2.7	2.33	13.66	8.45	10.61	3.75
Merged-chrX-164436879-1	chrX	164436379	164437379	+	943.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313737)	promoter-TSS (NM_001313737)	-115.0	NM_026853	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	4.58	1.38	3.7	2.02	2.33	9.65	19.01	21.22	13.74
Merged-chr8-124922694-3	chr8	124922190	124923190	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	URR1A|DNA|hAT-Charlie	24804.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	75.51	58.98	61.97	66.12	54.11	29.74	27.46	18.13	21.23
Merged-chr12-103347165-1	chr12	103346665	103347665	+	943.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	8836.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	144.73	138.24	110.99	123.47	80.71	58.68	117.24	106.56	48.09
Merged-chr10-4388643-1	chr10	4388143	4389143	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033466)	promoter-TSS (NM_001033466)	-535.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	62.93	67.27	49.02	79.62	86.77	86.01	83.44	71.63	64.95
Merged-chrX-73962957-3	chrX	73962455	73963455	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008224, intron 1 of 25)	MIR3|SINE|MIR	3402.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	29.75	31.33	34.22	24.29	16.33	36.17	28.52	25.2	33.1
Merged-chr11-94212097-1	chr11	94211597	94212597	+	943.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009427, intron 1 of 1)	intron (NM_009427, intron 1 of 1)	643.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	81.8	41.47	47.17	100.53	48.05	56.27	64.43	38.47	44.97
Merged-chr15-73512486-3	chr15	73512001	73513001	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081066)	promoter-TSS (NM_001081066)	-59.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	9.15	2.3	5.55	6.07	2.8	4.82	16.9	5.31	3.12
Merged-chr14-47649787-3	chr14	47649309	47650309	+	943.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347528, intron 1 of 37)	CpG	498.0	NM_001347524	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	93.24	85.71	92.5	116.05	102.17	102.08	76.05	56.16	42.47
Merged-chr12-73201825-3	chr12	73201321	73202321	+	942.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008612, intron 6 of 7)	intron (NM_008612, intron 6 of 7)	78104.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	4.0	9.22	3.7	5.4	5.6	3.22	17.96	12.38	7.49
Merged-chr6-108696065-3	chr6	108695559	108696559	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35125.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	8.58	10.6	2.77	12.82	10.73	8.04	9.51	7.52	7.49
Merged-chr4-109257790-3	chr4	109257285	109258285	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22153.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	9.72	11.06	5.55	14.17	7.0	9.65	13.73	5.75	14.99
Merged-chr11-26961752-3	chr11	26961261	26962261	+	942.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176653.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.29	1.38	3.7	1.35	3.73	3.22	3.17	0.88	5.0
Merged-chr15-85336553-4	chr15	85336107	85337107	+	942.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016843, intron 1 of 11)	CpG	226.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	47.48	42.85	62.9	62.07	52.25	46.62	78.16	62.79	42.47
Merged-chr2-18608979-3	chr2	18608472	18609472	+	942.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63490.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	11.44	3.23	0.0	12.14	2.8	4.02	5.28	7.52	5.62
Merged-chr16-65378454-3	chr16	65377939	65378939	+	942.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142190.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	7.44	4.15	5.55	6.75	3.27	7.23	5.28	2.65	7.49
Merged-chr2-69635206-3	chr2	69634693	69635693	+	942.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12062.0	NM_028284	72569.0	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	10.87	9.22	5.55	17.54	8.86	12.06	29.57	22.11	7.49
Merged-chr10-40310405-3	chr10	40309901	40310901	+	942.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8213.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	17.73	7.37	9.25	8.1	5.6	3.22	7.39	3.98	11.24
Merged-chr9-57262500-5	chr9	57261931	57262931	+	942.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028820, exon 1 of 3)	5' UTR (NM_028820, exon 1 of 3)	168.0	NM_028820	74211.0	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	160.18	152.52	84.17	253.69	209.93	214.61	221.8	178.64	73.69
Merged-chr17-63370094-3	chr17	63369593	63370593	+	942.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 5 of 8)	intron (NM_015794, intron 5 of 8)	-57120.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	12.59	8.29	6.47	20.24	9.8	1.61	15.84	14.15	1.87
Merged-chr17-42449280-2	chr17	42448771	42449771	+	942.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	132671.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	15.45	23.04	7.4	5.4	4.67	4.82	35.91	27.41	19.98
Merged-chr16-21719910-3	chr16	21719420	21720420	+	942.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25255.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	14.3	7.83	5.55	15.52	5.6	8.04	6.34	5.31	6.25
Merged-chr12-26439484-3	chr12	26438945	26439945	+	942.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17007.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	124.71	128.56	88.8	106.61	85.37	110.92	13.73	7.07	2.5
Merged-chr2-4617022-3	chr2	4616523	4617523	+	942.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35112.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	22.31	23.5	28.67	26.99	31.72	22.51	36.97	27.86	16.86
Merged-chr16-30974733-3	chr16	30974243	30975243	+	942.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	L1MA9|LINE|L1	106689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	77.23	82.48	48.1	65.45	62.05	81.99	59.15	60.58	49.96
Merged-chr5-134184278-5	chr5	134183755	134184755	+	942.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053266, exon 1 of 16)	5' UTR (NM_053266, exon 1 of 16)	217.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	292.32	303.2	221.99	264.49	334.02	205.77	256.65	254.69	133.02
Merged-chr19-40305612-1	chr19	40305112	40306112	+	942.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034962, intron 20 of 22)	MIR3|SINE|MIR	-33996.0	NM_016861	54132.0	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	4.0	1.84	5.55	13.49	10.26	12.06	2.11	1.33	2.5
Merged-chr3-89909260-3	chr3	89908752	89909752	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3944.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	49.77	41.01	29.6	44.53	33.59	45.82	32.74	30.51	29.98
Merged-chr9-61310149-3	chr9	61309634	61310634	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16325.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	8.58	7.37	20.35	10.8	3.73	8.04	9.51	1.77	5.0
Merged-chr9-98979905-3	chr9	98979413	98980413	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6460.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	5.15	1.84	1.85	4.72	4.67	1.61	1.06	3.1	5.0
Merged-chr2-52455800-3	chr2	52455351	52456351	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-30977.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	12.59	12.44	3.7	18.89	9.33	15.27	13.73	12.82	1.87
Merged-chr10-82867077-3	chr10	82866582	82867582	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025499, exon 1 of 1)	exon (NM_025499, exon 1 of 1)	456.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	43.48	30.41	11.1	51.28	27.06	44.21	77.1	50.41	42.47
Merged-chr5-74618695-3	chr5	74618185	74619185	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359074, intron 5 of 10)	intron (NM_001359074, intron 5 of 10)	59187.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	6.86	5.07	9.25	18.22	5.6	14.47	9.51	3.54	3.75
Merged-chr1-82796300-3	chr1	82795785	82796785	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27829.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	35.47	31.33	34.22	56.68	35.92	52.25	48.58	35.82	31.23
Merged-chr10-95840122-3	chr10	95839616	95840616	+	942.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-100547.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	17.73	16.13	22.2	24.29	28.46	54.66	26.4	21.67	14.36
Merged-chr6-124857188-3	chr6	124856699	124857699	+	942.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013534, exon 1 of 15)	exon (NM_013534, exon 1 of 15)	488.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	10.87	5.53	0.0	10.12	2.33	1.61	6.34	0.88	3.12
Merged-chr2-109230995-2	chr2	109230477	109231477	+	942.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	47313.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	12.01	7.83	9.25	6.75	6.53	11.25	12.67	11.05	3.75
Merged-chr11-23682938-3	chr11	23682438	23683438	+	942.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	intron (NM_001033654, intron 4 of 17)	16962.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	44.62	59.9	36.07	74.22	76.04	54.66	89.78	87.11	49.96
Merged-chr4-155492458-3	chr4	155491879	155492879	+	942.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	CpG	1018.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	243.69	205.05	179.44	188.92	167.94	143.88	178.5	129.55	105.55
Merged-chr14-31181847-3	chr14	31181339	31182339	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022656, intron 13 of 20)	intron (NM_022656, intron 13 of 20)	-13198.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	54.92	64.51	46.25	76.24	57.85	98.06	49.64	60.13	31.23
Merged-chr4-130922135-3	chr4	130921605	130922605	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8771.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	57.78	52.07	47.17	60.05	69.04	58.68	67.6	76.49	25.61
Merged-chr1-55807152-3	chr1	55806630	55807630	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124111.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	29.75	53.45	67.52	30.36	29.86	33.76	40.14	39.35	51.21
Merged-chr4-109657335-3	chr4	109656910	109657910	+	942.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	7962.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	5.15	4.15	3.7	10.8	9.33	11.25	11.62	9.29	9.99
Merged-chr5-143048396-3	chr5	143047887	143048887	+	942.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	64633.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	42.9	44.7	65.67	47.9	25.66	53.85	36.97	34.05	43.72
Merged-chr2-78995326-3	chr2	78994822	78995822	+	942.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125644.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	11.44	10.6	9.25	12.82	7.0	9.65	11.62	12.38	9.99
Merged-chr17-34031135-3	chr17	34030667	34031667	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011306)	promoter-TSS (NM_011306)	523.0	NM_001077709	14977.0	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	232.83	162.66	112.84	294.85	147.88	190.5	229.19	206.49	117.41
Merged-chr11-55147607-3	chr11	55147085	55148085	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172258, intron 3 of 10)	intron (NM_172258, intron 3 of 10)	4121.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	22.31	19.35	49.02	25.64	25.19	64.3	21.12	20.78	15.61
Merged-chr8-10848348-3	chr8	10847853	10848853	+	942.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34101.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	28.03	20.74	11.1	35.76	21.46	19.29	9.51	6.19	6.25
Merged-chr5-30014747-3	chr5	30014250	30015250	+	942.6555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314054, intron 2 of 4)	intron (NM_001314054, intron 2 of 4)	1636.0	NM_031168	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	10.3	17.97	18.5	6.75	8.4	8.04	17.96	15.03	11.24
Merged-chr11-3148653-2	chr11	3148152	3149152	+	942.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 14 of 32)	intron (NM_030207, intron 14 of 32)	24631.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	55.49	54.83	54.57	51.95	62.98	86.81	3.17	2.65	96.8
Merged-chrX-159650816-3	chrX	159650310	159651310	+	942.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	23538.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	46.91	49.3	49.02	76.24	67.18	85.2	81.33	61.9	41.22
Merged-chr19-10739003-3	chr19	10738500	10739500	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007650)	promoter-TSS (NM_007650)	-26.0	NM_007650	12507.0	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	6.86	2.3	0.0	10.8	6.06	14.47	1.06	2.65	0.0
Merged-chr8-123855277-3	chr8	123854763	123855763	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028536, intron 2 of 3)	HAL1|LINE|L1	4946.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	40.04	59.44	65.67	45.88	61.11	57.07	34.85	44.66	44.34
Merged-chr4-155505207-3	chr4	155504714	155505714	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	intron (NM_001160017, intron 1 of 10)	13853.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	18.88	14.28	13.87	11.47	8.4	10.45	17.96	15.92	14.36
Merged-chr15-77931822-3	chr15	77931328	77932328	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2834.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	18.88	18.43	38.85	18.22	17.26	28.94	22.18	28.74	24.98
Merged-chr6-116735523-3	chr6	116735038	116736038	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-18780.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	4.0	7.83	3.7	8.77	4.2	3.22	4.22	7.07	1.25
Merged-chr9-86579816-3	chr9	86579333	86580333	+	942.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7780.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	11.44	6.45	9.25	11.47	7.93	8.04	7.39	7.07	12.49
Merged-chr1-191092561-4	chr1	191092014	191093014	+	942.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5900.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	102.97	128.1	134.12	114.03	100.3	144.68	123.57	187.04	103.67
Merged-chr14-55874107-3	chr14	55873609	55874609	+	942.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001040072, exon 8 of 8)	3' UTR (NM_001040072, exon 8 of 8)	10147.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	6.86	2.76	1.85	8.77	4.67	1.61	4.22	3.1	5.0
Merged-chr19-21495966-1	chr19	21495466	21496466	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23305.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.58	1.84	3.7	2.02	2.33	8.84	3.17	1.33	3.12
Merged-chr13-59003428-2	chr13	59002915	59003915	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	195718.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	119.56	167.26	132.27	178.13	174.94	160.76	202.79	237.0	91.81
Merged-chr11-22437690-2	chr11	22437188	22438188	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74595.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	10.3	2.76	3.7	52.63	80.24	34.56	10.56	13.27	3.75
Merged-chr2-22861413-3	chr2	22860926	22861926	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-34096.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	29.17	20.74	24.05	21.59	18.19	15.27	32.74	19.46	16.24
Merged-chr14-10535043-1	chr14	10534543	10535543	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	RMER10A|LTR|ERVL	-81585.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.0	0.92	0.0	4.05	2.33	5.63	1.06	0.88	7.49
Merged-chr1-135617551-2	chr1	135617051	135618051	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19775.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	5.15	2.3	10.17	10.12	12.13	9.65	19.01	10.17	18.11
Merged-chr10-10424563-2	chr10	10424041	10425041	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 10 of 36)	MLT2B4|LTR|ERVL	47773.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	6.86	8.29	7.4	5.4	7.93	4.82	16.9	6.63	12.49
Merged-chr1-95644269-2	chr1	95643783	95644783	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	MIR3|SINE|MIR	23311.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	8.01	9.22	1.85	13.49	4.67	9.65	11.62	7.07	4.37
Merged-chr19-32224512-3	chr19	32223993	32224993	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-13480.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	152.17	168.19	73.07	252.34	301.36	184.07	152.09	160.51	106.79
Merged-chr13-34089251-3	chr13	34088781	34089781	+	942.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 3 of 4)	intron (NR_046184, intron 3 of 4)	-11273.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	66.93	63.13	48.1	49.93	53.65	62.7	77.1	93.3	33.72
Merged-chr1-36307257-2	chr1	36306756	36307756	+	942.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033310)	promoter-TSS (NR_033310)	-477.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	29.17	16.59	16.65	35.76	18.66	29.74	32.74	25.65	9.37
Merged-chr4-145246332-2	chr4	145245821	145246821	+	942.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	549.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	172.19	199.06	229.39	183.52	201.07	191.3	231.3	244.08	133.02
Merged-chr3-79491858-3	chr3	79491347	79492347	+	942.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 10 of 16)	intron (NM_001162999, intron 10 of 16)	75832.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	33.18	17.05	7.4	45.88	30.79	32.15	25.35	19.9	12.49
Merged-chr15-97787738-5	chr15	97787265	97788265	+	942.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	3400.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	108.12	135.01	72.15	155.86	132.02	159.95	105.62	114.52	83.69
Merged-chr1-135130433-3	chr1	135129954	135130954	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153383, intron 1 of 36)	(A)n|Simple_repeat|Simple_repeat	2121.0	NR_153383	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	10.87	4.15	10.17	8.77	6.06	16.08	3.17	7.96	9.37
Merged-chr18-38190749-3	chr18	38190242	38191242	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19020.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	8.58	0.92	1.85	2.02	0.93	3.22	5.28	0.0	0.62
Merged-chr1-91187547-3	chr1	91187027	91188027	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168392, intron 1 of 3)	intron (NM_001168392, intron 1 of 3)	7705.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	29.17	21.2	12.02	35.09	35.92	49.83	27.46	17.69	17.49
Merged-chr15-95793948-3	chr15	95793454	95794454	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3111.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	156.17	170.03	121.17	176.78	146.48	143.88	175.33	206.05	93.68
Merged-chr8-22658735-3	chr8	22658252	22659252	+	942.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010546)	TTS (NM_010546)	-5315.0	NM_011130	18970.0	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	103.54	135.47	84.17	97.83	89.57	91.63	96.11	121.15	88.68
Merged-chr16-30689498-1	chr16	30688998	30689998	+	942.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	89775.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	17.73	6.91	14.8	11.47	7.93	8.04	78.16	84.9	45.59
Merged-chr7-126554207-3	chr7	126553708	126554708	+	942.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146200, intron 15 of 20)	RSINE1|SINE|B4	12158.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	24.6	19.81	13.87	13.49	9.8	12.06	24.29	20.78	15.61
Merged-chr15-9127759-2	chr15	9127261	9128261	+	942.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 3 of 9)	intron (NM_013787, intron 3 of 9)	12693.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	94.39	105.06	75.85	30.36	20.06	33.76	12.67	3.98	13.74
Merged-chr5-140206048-3	chr5	140205548	140206548	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-31130.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	28.6	21.66	19.42	43.18	41.05	52.25	27.46	20.34	18.11
Merged-chr12-80128780-3	chr12	80128299	80129299	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	4045.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	37.18	39.17	30.52	38.46	16.33	27.33	51.75	42.45	18.11
Merged-chr5-112281960-3	chr5	112281452	112282452	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	5261.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	83.52	96.3	97.12	126.85	126.42	110.12	94.0	83.57	68.07
Merged-chr10-14086004-2	chr10	14085470	14086470	+	942.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	119591.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	70.93	46.08	24.97	52.63	34.99	30.54	77.1	65.0	13.12
Merged-chr14-21268424-3	chr14	21267936	21268936	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	RMER19B|LTR|ERVK	192284.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	16.59	11.06	7.4	33.06	16.33	8.04	9.51	7.96	5.62
Merged-chr3-31394103-3	chr3	31393600	31394600	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83781.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	30.89	24.88	24.97	74.22	65.78	50.64	119.35	83.57	32.48
Merged-chr16-36068584-3	chr16	36068082	36069082	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	2933.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	94.96	100.45	80.47	83.66	51.32	86.01	122.52	126.46	87.43
Merged-chr11-99073979-3	chr11	99073427	99074427	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172564, exon 7 of 13)	exon (NM_172564, exon 7 of 13)	15379.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	24.03	21.2	26.82	41.83	19.13	49.83	36.97	29.18	40.59
Merged-chr3-142766369-3	chr3	142765860	142766860	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	1113.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	50.34	56.68	24.05	61.4	58.78	55.46	42.25	55.71	38.1
Merged-chr1-163975295-3	chr1	163974788	163975788	+	942.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357049, intron 10 of 24)	intron (NM_001357049, intron 10 of 24)	19508.0	NM_001357049	381306.0	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	3.43	11.98	8.32	10.8	4.2	1.61	13.73	10.61	10.62
Merged-chr14-51984438-3	chr14	51983920	51984920	+	942.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	-413.0	NM_001145921	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	16.59	4.61	5.55	3.37	1.4	4.82	5.28	0.44	3.12
Merged-chr14-57808749-3	chr14	57808258	57809258	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198605, intron 7 of 8)	intron (NM_198605, intron 7 of 8)	10334.0	NR_037238	100526476.0		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	8.58	4.61	0.0	7.42	6.53	12.86	9.51	14.59	8.12
Merged-chr12-100615344-3	chr12	100614837	100615837	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-94515.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	17.16	8.29	5.55	8.77	3.27	12.06	10.56	3.54	4.37
Merged-chr14-56888106-3	chr14	56887610	56888610	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177627, intron 2 of 2)	intron (NM_177627, intron 2 of 2)	1267.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	25.17	30.87	16.65	17.54	21.93	49.83	30.63	34.93	29.98
Merged-chr1-193170067-3	chr1	193169577	193170577	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016851, exon 8 of 8)	3' UTR (NM_016851, exon 8 of 8)	-3392.0	NM_001160360	319266.0	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	4.0	7.83	5.55	5.4	2.8	6.43	9.51	5.75	9.99
Merged-chr11-55470629-3	chr11	55470205	55471205	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013716, intron 1 of 11)	intron (NM_013716, intron 1 of 11)	953.0	NM_013716	27041.0	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	123.56	130.86	64.75	162.61	103.56	81.99	137.3	103.02	40.59
Merged-chr9-44522135-3	chr9	44521650	44522650	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007551, intron 1 of 1)	intron (NM_007551, intron 1 of 1)	4271.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	9.72	7.83	5.55	9.45	6.06	4.02	24.29	12.82	7.49
Merged-chr1-133033946-3	chr1	133033475	133034475	+	942.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-3388.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	54.92	60.82	35.15	56.0	66.24	52.25	45.42	41.56	27.48
Merged-chr2-160872601-2	chr2	160872095	160873095	+	942.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177263, intron 1 of 3)	CpG	395.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	81.23	35.94	60.12	76.24	41.05	53.85	67.6	38.03	33.72
Merged-chr15-39777463-4	chr15	39776932	39777932	+	942.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-19613.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	14.3	9.22	3.7	19.57	5.13	12.06	26.4	18.57	6.25
Merged-chr15-27784099-5	chr15	27783545	27784545	+	942.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	intron (NM_001081302, intron 34 of 56)	-102503.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	140.73	149.29	91.57	95.14	130.62	83.59	96.11	95.07	75.57
Merged-chr7-141491098-3	chr7	141490602	141491602	+	942.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 4 of 7)	intron (NM_001252588, intron 4 of 7)	14722.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	14.87	13.82	14.8	24.96	16.79	18.49	11.62	9.29	11.24
Merged-chr13-89834670-1	chr13	89834170	89835170	+	942.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	-92158.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	1.14	0.0	1.85	0.0	1.4	0.0	7.39	3.1	1.87
Merged-chrX-164836677-3	chrX	164836182	164837182	+	942.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	143693.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	29.17	29.49	10.17	18.22	20.99	16.88	4.22	4.86	3.75
Merged-chr14-14804966-3	chr14	14804459	14805459	+	942.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15856.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	8.01	6.91	3.7	10.8	4.2	8.04	3.17	2.65	3.12
Merged-chr2-27759062-2	chr2	27758586	27759586	+	942.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 9 of 9)	intron (NM_001290481, intron 9 of 9)	48503.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	86.38	71.88	71.22	82.99	71.84	75.56	67.6	68.54	39.97
Merged-chrY-90761450-2	chrY	90760948	90761948	+	942.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6398.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	10.3	5.53	3.7	22.94	12.6	3.22	14.79	19.01	7.49
Merged-chr18-64989655-3	chr18	64989166	64990166	+	942.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-33861.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.15	3.69	10.17	7.42	2.8	4.82	16.9	8.84	8.74
Merged-chr11-23821852-3	chr11	23821349	23822349	+	942.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50879.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	77.8	115.2	77.7	64.77	73.71	71.54	66.54	72.96	44.34
Merged-chr14-54714293-3	chr14	54713797	54714797	+	942.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2123.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	16.02	24.88	10.17	35.76	12.6	15.27	13.73	13.27	5.0
Merged-chr2-75775902-3	chr2	75775395	75776395	+	942.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56282.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	100.68	100.91	48.1	95.81	52.72	66.71	106.67	117.17	91.18
Merged-chr1-89575152-3	chr1	89574659	89575659	+	942.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	108733.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	38.9	39.63	28.67	27.66	34.06	35.37	20.07	12.38	9.99
Merged-chr9-105034616-2	chr9	105034114	105035114	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001357439)	TTS (NM_001357439)	-18654.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	54.92	81.56	26.82	81.64	62.98	69.93	13.73	21.67	32.48
Merged-chr4-63089643-2	chr4	63089137	63090137	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028326, intron 4 of 14)	intron (NM_028326, intron 4 of 14)	64535.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	5.72	9.68	5.55	8.77	3.27	8.04	3.17	0.44	8.74
Merged-chr7-29906290-4	chr7	29905817	29906817	+	942.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011754)	promoter-TSS (NM_011754)	-192.0	NR_106128	102465770.0		NR_106128	ENSMUSG00000098873	Mir7668	Gm27961|mmu-mir-7668	microRNA 7668	ncRNA	84.09	115.66	97.12	89.06	86.3	94.04	233.42	221.53	89.93
Merged-chr17-34079767-3	chr17	34079267	34080267	+	942.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12612.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	7.44	7.83	10.17	2.7	1.87	3.22	4.22	5.75	2.5
Merged-chr18-46452310-3	chr18	46451815	46452815	+	942.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	27.46	30.87	26.82	32.39	24.72	61.89	33.8	29.63	14.36
Merged-chr2-30587414-3	chr2	30586919	30587919	+	942.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7625.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	1.72	3.69	4.62	10.12	7.46	12.06	2.11	3.1	9.37
Merged-chr15-77839065-3	chr15	77838556	77839556	+	942.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	3119.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	74.37	91.7	74.92	66.8	59.25	74.75	84.49	75.17	78.69
Merged-chr12-84218462-3	chr12	84217966	84218966	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	CpG	415.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	277.45	237.3	201.64	315.77	248.18	204.97	238.7	220.2	119.91
Merged-chrX-9455755-3	chrX	9455247	9456247	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 4 of 12)	Lx4B|LINE|L1	13577.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	17.73	16.13	17.57	18.22	9.8	24.11	27.46	19.9	7.49
Merged-chr4-135856564-3	chr4	135856078	135857078	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080387, intron 1 of 5)	CpG	507.0	NM_010178	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	110.41	95.84	91.57	107.28	56.91	75.56	103.51	63.23	69.32
Merged-chr17-88435877-3	chr17	88435380	88436380	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4824.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	46.34	37.78	41.62	88.39	56.45	73.14	46.47	62.35	29.98
Merged-chr18-43493005-3	chr18	43492512	43493512	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-54726.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.57	5.07	0.0	5.4	6.53	4.82	5.28	3.98	1.87
Merged-chr2-154436736-2	chr2	154436248	154437248	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172860, intron 1 of 10)	CpG	264.0	NM_009823	12396.0	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	84.09	57.14	81.4	70.17	66.71	79.58	80.27	77.38	38.72
Merged-chr7-128344687-1	chr7	128344187	128345187	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46556.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	2.29	7.37	0.92	9.45	5.6	8.04	4.22	2.65	1.25
Merged-chr9-95674666-1	chr9	95674166	95675166	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 3 of 8)	MTD|LTR|ERVL-MaLR	37038.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	14.87	15.21	14.8	10.12	10.26	17.68	24.29	17.24	19.98
Merged-chr10-34112488-1	chr10	34111988	34112988	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15484.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	16.02	16.13	14.8	18.22	9.8	9.65	7.39	4.86	13.12
Merged-chr5-148956292-2	chr5	148955784	148956784	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6034.0	NR_040686	71473.0	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	4.58	2.3	9.25	4.72	3.27	6.43	14.79	13.71	7.49
Merged-chr11-82845899-3	chr11	82845397	82846397	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	-16854.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	81.8	77.41	33.3	98.51	84.9	77.16	95.06	66.33	55.58
Merged-chr12-55495287-3	chr12	55494781	55495781	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2634.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	22.88	11.52	3.7	16.19	9.33	18.49	14.79	12.38	11.24
Merged-chr14-31401128-3	chr14	31400628	31401628	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16549.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	81.23	73.73	52.72	107.95	78.84	105.3	87.66	61.02	55.58
Merged-chr7-65475920-3	chr7	65475425	65476425	+	942.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-104681.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	14.3	11.52	6.47	12.14	11.66	27.33	23.24	9.29	16.24
Merged-chr6-5112603-1	chr6	5112103	5113103	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 8 of 15)	intron (NM_181595, intron 8 of 15)	81343.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.86	3.69	7.4	9.45	2.8	0.0	2.11	1.33	2.5
Merged-chr9-45314148-2	chr9	45313662	45314662	+	942.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-4938.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.15	4.15	0.0	10.12	2.8	4.82	20.07	11.94	5.0
Merged-chr1-170903590-3	chr1	170903100	170904100	+	941.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	9341.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	21.74	20.74	12.95	53.98	39.19	51.44	34.85	38.91	21.23
Merged-chr18-54992129-3	chr18	54991628	54992628	+	941.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	463.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	121.85	169.11	64.75	120.1	103.1	82.79	136.25	161.83	96.18
Merged-chr8-109455304-3	chr8	109454804	109455804	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38723.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	9.15	7.37	7.4	13.49	5.13	11.25	6.34	2.65	2.5
Merged-chr9-64824865-3	chr9	64824366	64825366	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	intron (NM_001162917, intron 2 of 34)	13855.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	34.9	23.5	11.1	18.22	15.39	8.04	11.62	13.71	8.12
Merged-chr2-3519516-3	chr2	3519035	3520035	+	941.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177647, intron 2 of 3)	intron (NM_177647, intron 2 of 3)	6470.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	97.82	108.75	84.17	86.36	82.11	81.99	78.16	85.34	64.33
Merged-chr10-59283375-2	chr10	59282870	59283870	+	941.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-39926.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	8.58	6.91	6.47	5.4	7.46	10.45	9.51	7.96	8.74
Merged-chr11-96775875-3	chr11	96775409	96776409	+	941.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028965, intron 2 of 8)	intron (NM_028965, intron 2 of 8)	1646.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	68.65	83.4	64.75	76.24	67.64	86.81	89.78	110.1	62.45
Merged-chr8-75108759-3	chr8	75108292	75109292	+	941.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008566)	promoter-TSS (NM_008566)	-717.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	30.32	26.73	24.97	14.84	21.93	30.54	33.8	28.74	13.74
Merged-chr17-33562491-3	chr17	33561991	33562991	+	941.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	6784.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	104.69	111.97	118.39	63.42	73.71	81.99	81.33	74.28	57.46
Merged-chr8-71634494-3	chr8	71633997	71634997	+	941.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-3391.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	13.16	10.14	3.7	18.89	7.93	1.61	6.34	3.98	5.0
Merged-chr18-61127746-2	chr18	61127248	61128248	+	941.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 15 of 21)	L3|LINE|CR1	10280.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	22.31	35.02	38.85	36.43	24.72	36.17	38.02	48.64	43.72
Merged-chr15-66272527-2	chr15	66272026	66273026	+	941.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	13698.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	6.86	8.29	19.42	16.19	6.53	6.43	4.22	3.98	3.75
Merged-chr13-46906127-3	chr13	46905625	46906625	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	G-rich|Low_complexity|Low_complexity	23593.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	20.02	23.04	18.5	26.99	22.86	41.8	41.19	45.54	35.6
Merged-chr4-108327199-3	chr4	108326749	108327749	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027250)	promoter-TSS (NM_027250)	-903.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	78.37	81.1	59.2	68.82	63.45	83.59	110.9	95.95	53.71
Merged-chr4-127242934-3	chr4	127242433	127243433	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030252)	promoter-TSS (NM_030252)	-851.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	14.87	8.75	15.72	11.47	7.0	6.43	13.73	11.94	14.36
Merged-chr10-82899078-1	chr10	82898578	82899578	+	941.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	32452.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	4.58	5.53	7.4	11.47	5.13	3.22	48.58	49.96	28.1
Merged-chr9-55390394-1	chr9	55389894	55390894	+	941.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	RCHARR1|DNA|hAT-Charlie	63481.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	13.73	9.68	5.55	10.8	12.13	3.22	4.22	4.86	0.0
Merged-chr8-120537906-5	chr8	120537400	120538400	+	941.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106159)	promoter-TSS (NR_106159)	-174.0	NR_151732	74227.0	Mm.334856	NR_151732	ENSMUSG00000102737	1700016A09Rik	-	RIKEN cDNA 1700016A09 gene	ncRNA	131.0	99.99	136.89	144.39	146.95	186.48	186.94	178.64	107.42
Merged-chr5-90365553-5	chr5	90365068	90366068	+	941.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	CpG	617.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	294.04	248.36	246.96	206.46	202.0	210.59	253.48	220.64	169.25
Merged-chr4-126153060-3	chr4	126152569	126153569	+	941.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	5066.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	43.48	35.02	25.9	36.43	22.39	28.94	28.52	46.43	23.73
Merged-chr6-38352123-3	chr6	38351619	38352619	+	941.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	2484.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	54.35	52.99	36.07	55.33	42.45	23.31	60.2	61.9	44.34
Merged-chr19-29500546-2	chr19	29500049	29501049	+	941.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21438.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	30.89	33.64	40.7	45.88	35.45	33.76	65.48	53.06	20.61
Merged-chr9-23597932-3	chr9	23597409	23598409	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	374833.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	28.6	11.52	28.67	20.24	10.73	24.11	17.96	17.24	16.24
Merged-chr4-120882350-3	chr4	120881829	120882829	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 3 of 7)	intron (NM_182929, intron 3 of 7)	27530.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	75.51	54.37	61.05	63.42	29.39	50.64	58.09	41.56	68.07
Merged-chr6-29785963-3	chr6	29785462	29786462	+	941.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	L1M2|LINE|L1	17519.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	42.33	39.17	21.27	37.78	31.72	30.54	30.63	26.09	12.49
Merged-chr6-72881410-3	chr6	72880901	72881901	+	941.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	17891.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	50.91	46.54	32.37	47.9	34.06	28.13	43.3	35.37	33.72
Merged-chr19-28679998-5	chr19	28679453	28680453	+	941.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305671, exon 1 of 10)	5' UTR (NM_001305671, exon 1 of 10)	124.0	NM_001305671	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	12.01	2.3	1.85	14.17	9.33	10.45	3.17	3.98	8.74
Merged-chr2-27414593-1	chr2	27414093	27415093	+	941.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	13015.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	35.47	35.94	51.8	36.43	26.12	36.17	50.7	29.18	19.98
Merged-chr7-114016465-3	chr7	114015964	114016964	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	101317.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	8.58	4.61	5.55	6.75	4.2	3.22	11.62	7.52	10.62
Merged-chr7-25109522-3	chr7	25109044	25110044	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163556, intron 5 of 13)	intron (NM_001163556, intron 5 of 13)	-12369.0	NR_105855	102465968.0		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	20.59	23.96	31.45	27.66	28.46	45.01	41.19	28.74	29.98
Merged-chr1-86441594-3	chr1	86441099	86442099	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15270.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	139.01	94.92	71.22	161.93	112.9	110.92	180.61	149.89	109.29
Merged-chr3-153408075-3	chr3	153407592	153408592	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-109443.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	16.59	9.68	9.25	10.8	15.39	16.08	10.56	7.52	6.87
Merged-chr4-129794196-1	chr4	129793696	129794696	+	941.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26283.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	29.75	11.98	11.1	10.8	8.86	11.25	13.73	12.38	9.37
Merged-chr9-77655348-3	chr9	77654849	77655849	+	941.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172925, exon 3 of 3)	exon (NM_172925, exon 3 of 3)	18617.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	8.01	7.83	7.4	21.59	7.0	6.43	17.96	7.52	2.5
Merged-chr15-103274749-2	chr15	103274262	103275262	+	941.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	1874.0	NM_001357748	56447.0	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	39.47	51.15	46.25	41.83	29.86	31.35	48.58	46.87	31.23
Merged-chr7-127008357-3	chr7	127007847	127008847	+	941.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	6247.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	175.05	165.42	97.12	189.6	154.41	135.04	106.67	125.13	67.45
Merged-chr12-95748966-3	chr12	95748471	95749471	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	56745.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	20.02	26.26	33.3	21.59	24.26	22.51	36.97	20.78	17.49
Merged-chr10-17560191-3	chr10	17559695	17560695	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163033.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	17.16	32.72	24.05	22.27	20.99	38.58	19.01	24.76	23.73
Merged-chr6-117816456-3	chr6	117815967	117816967	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24714.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	41.76	51.15	24.05	53.98	49.45	73.14	28.52	27.86	14.99
Merged-chr17-69439346-3	chr17	69438845	69439845	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145192)	promoter-TSS (NM_001145192)	19.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	1.14	2.3	0.0	2.02	0.93	3.22	0.0	0.0	2.5
Merged-chr13-6906189-3	chr13	6905705	6906705	+	941.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-257434.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	2.86	13.82	12.02	3.37	4.2	4.82	4.22	7.52	8.74
Merged-chr14-56811241-3	chr14	56810694	56811694	+	941.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152252)	promoter-TSS (NR_152252)	270.0	NM_001253753	219105.0	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	83.52	78.33	64.75	78.94	60.65	65.11	71.82	44.66	44.34
Merged-chr4-74357741-2	chr4	74357240	74358240	+	941.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 15 of 20)	intron (NM_001356561, intron 15 of 20)	105861.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	2.86	13.82	12.95	8.1	9.33	5.63	17.96	6.63	5.0
Merged-chr4-139205132-3	chr4	139204649	139205649	+	941.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	11038.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	79.52	67.27	77.7	59.38	41.99	70.73	123.57	95.95	43.72
Merged-chr2-27266034-3	chr2	27265535	27266535	+	941.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 29 of 29)	L1MEg|LINE|L1	-18732.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	20.02	26.73	24.05	18.22	24.72	31.35	20.07	18.57	19.98
Merged-chr1-133132189-3	chr1	133131676	133132676	+	941.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1010.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	299.18	415.17	337.61	204.44	333.09	222.65	241.87	295.81	257.93
Merged-chr9-115458348-3	chr9	115457871	115458871	+	941.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76552.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	25.74	10.6	1.85	19.57	1.87	12.86	33.8	26.09	19.98
Merged-chr18-82917654-3	chr18	82917114	82918114	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033307)	TTS (NR_033307)	2946.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	18.88	7.83	12.95	17.54	8.4	7.23	10.56	15.92	6.25
Merged-chr12-83949953-3	chr12	83949456	83950456	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023633)	promoter-TSS (NM_023633)	-652.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	53.2	60.36	47.17	74.22	53.65	73.95	52.81	72.07	52.46
Merged-chr2-116984039-3	chr2	116983542	116984542	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83890.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	54.35	39.17	23.12	72.19	53.65	53.05	35.91	49.52	22.48
Merged-chr19-3283008-3	chr19	3282505	3283505	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009212)	promoter-TSS (NM_009212)	5.0	NM_009212	20589.0	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	78.94	73.26	56.42	95.14	58.78	73.95	83.44	59.69	39.97
Merged-chr15-28365347-2	chr15	28364843	28365843	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 47 of 78)	intron (NM_133365, intron 47 of 78)	161577.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	7.44	3.69	2.77	8.77	4.67	4.82	5.28	6.63	3.75
Merged-chr3-144585301-3	chr3	144584799	144585799	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14872.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	85.81	105.98	64.75	60.05	48.05	63.5	92.94	67.21	76.82
Merged-chr9-106448634-1	chr9	106448134	106449134	+	941.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110272)	promoter-TSS (NM_001110272)	-6.0	NM_029631	76491.0	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	7.44	4.61	1.85	8.77	2.33	5.63	29.57	21.22	4.37
Merged-chr1-157139570-1	chr1	157139070	157140070	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177644, exon 18 of 18)	3' UTR (NM_177644, exon 18 of 18)	-30890.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.29	3.23	3.7	8.77	6.53	11.25	7.39	3.1	1.87
Merged-chr7-133776682-4	chr7	133776133	133777133	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025850)	promoter-TSS (NM_025850)	170.0	NM_001286032	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	56.63	35.48	12.95	70.85	55.51	51.44	86.61	57.48	29.98
Merged-chr9-98351569-3	chr9	98351072	98352072	+	941.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	55002.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	76.66	65.43	39.77	124.82	136.22	81.99	22.18	31.39	6.25
Merged-chr5-9186632-2	chr5	9186114	9187114	+	941.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24838.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	9.72	11.52	9.25	8.1	9.8	20.9	16.9	19.46	12.49
Merged-chr2-164679350-3	chr2	164678854	164679854	+	941.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5267.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	50.34	48.84	36.07	70.17	82.57	77.16	107.73	126.46	46.22
Merged-chr9-56265129-3	chr9	56264633	56265633	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-104063.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	211.66	254.35	148.92	253.69	279.91	167.99	191.17	253.8	101.17
Merged-chr1-178242331-3	chr1	178241831	178242831	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024282, intron 2 of 4)	B2_Mm2|SINE|B2	54914.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	3.43	3.23	7.4	3.37	3.73	4.82	6.34	0.44	3.12
Merged-chr13-32903422-3	chr13	32902918	32903918	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-5278.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	10.87	4.61	1.85	2.02	3.73	1.61	5.28	3.98	1.25
Merged-chr5-93128079-3	chr5	93127570	93128570	+	941.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	34654.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	13.16	8.29	13.87	4.72	2.33	6.43	5.28	3.54	5.0
Merged-chr5-64959227-3	chr5	64958693	64959693	+	941.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	903.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	232.83	205.97	122.09	220.63	207.13	113.33	184.83	267.95	115.54
Merged-chr5-43234575-4	chr5	43234114	43235114	+	941.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175937, exon 1 of 11)	exon (NM_175937, exon 1 of 11)	740.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	88.67	64.97	110.07	100.53	67.18	114.14	129.91	65.0	99.92
Merged-chr19-6668746-3	chr19	6668224	6669224	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125654.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	21.74	16.59	19.42	20.24	14.93	24.11	20.07	17.24	12.49
Merged-chr11-94160628-3	chr11	94160135	94161135	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50819.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	32.61	21.2	12.02	87.04	66.71	63.5	26.4	16.36	11.24
Merged-chr2-117352909-3	chr2	117352404	117353404	+	941.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10027.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	222.53	201.82	77.7	195.67	166.08	91.63	185.89	247.61	74.94
Merged-chr4-107082375-3	chr4	107081884	107082884	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346552, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-14507.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	4.58	5.07	3.7	15.52	5.6	11.25	6.34	4.42	11.24
Merged-chr19-56777224-3	chr19	56776715	56777715	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36468.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	31.46	17.51	6.47	41.16	29.39	22.51	21.12	26.09	10.62
Merged-chr10-111365262-3	chr10	111364772	111365772	+	941.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66593.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	4.58	11.98	24.97	16.19	12.6	19.29	11.62	5.31	4.37
Merged-chr5-115977874-3	chr5	115977364	115978364	+	941.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007708, intron 27 of 46)	ORR1D2|LTR|ERVL-MaLR	46564.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	21.17	18.89	28.67	22.27	26.59	36.97	40.14	21.67	29.35
Merged-chr7-128393070-3	chr7	128392575	128393575	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	25097.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	200.79	184.31	162.79	178.8	141.82	158.35	165.82	161.83	130.53
Merged-chrX-150935231-1	chrX	150934731	150935731	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82062.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	2.86	4.61	7.4	5.4	2.8	4.02	3.17	1.77	5.0
Merged-chr8-128171314-3	chr8	128170791	128171791	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106934.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	8.58	9.22	1.85	8.77	2.8	4.82	11.62	7.52	12.49
Merged-chr15-58604819-3	chr15	58604317	58605317	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189349.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	64.64	58.52	70.3	49.93	49.45	61.09	61.26	57.48	44.97
Merged-chr14-103096910-1	chr14	103096410	103097410	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360342, intron 1 of 4)	intron (NM_001360342, intron 1 of 4)	2094.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	10.3	9.22	11.1	13.49	9.8	12.86	7.39	5.75	12.49
Merged-chr16-44026450-3	chr16	44025959	44026959	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 5 of 16)	L1M4|LINE|L1	1486.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	68.07	91.24	62.9	67.47	77.44	40.99	90.83	108.33	58.08
Merged-chr4-99211831-3	chr4	99211330	99212330	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	17683.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	53.77	44.24	36.07	35.09	20.99	24.11	52.81	63.23	34.97
Merged-chr4-114652605-3	chr4	114652097	114653097	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169123.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	14.87	21.2	20.35	12.82	17.26	21.7	13.73	16.8	10.62
Merged-chr17-59033658-3	chr17	59033158	59034158	+	941.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-20336.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	8.58	7.83	2.77	6.07	4.2	1.61	4.22	6.19	8.74
Merged-chr7-112369188-1	chr7	112368688	112369688	+	941.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027587, intron 1 of 9)	intron (NM_027587, intron 1 of 9)	880.0	NM_027587	100504195.0	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	2.29	2.3	0.0	4.05	2.33	0.0	0.0	1.77	0.0
Merged-chr17-65662841-3	chr17	65662346	65663346	+	941.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-20642.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	16.02	17.97	15.72	24.29	27.06	45.01	30.63	19.9	16.24
Merged-chr5-28123268-3	chr5	28122755	28123755	+	941.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42441.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	4.58	4.15	0.0	3.37	1.87	0.0	5.28	1.77	1.25
Merged-chr8-33733161-3	chr8	33732674	33733674	+	941.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167922, intron 1 of 7)	intron (NM_001167922, intron 1 of 7)	835.0	NM_001167922	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	72.65	102.75	83.25	97.83	120.36	98.06	95.06	134.42	73.07
Merged-chr13-93755299-3	chr13	93754793	93755793	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MRLTR33|LTR|ERVK	-16386.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	9.15	2.3	1.85	6.07	6.53	3.22	0.0	1.77	1.25
Merged-chr11-3168588-2	chr11	3168108	3169108	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	RLTR21|LTR|ERVK	24855.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	52.06	52.07	66.6	68.15	56.45	81.18	2.11	2.21	104.92
Merged-chr10-60835109-2	chr10	60834600	60835600	+	941.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3519.0	NM_001359273	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	2.86	4.15	5.55	4.72	0.47	3.22	1.06	2.65	2.5
Merged-chr18-68062148-3	chr18	68061644	68062644	+	941.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	128971.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	17.73	8.29	4.62	28.34	22.39	10.45	7.39	7.96	14.36
Merged-chr7-107661362-3	chr7	107660866	107661866	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008905, intron 3 of 24)	intron (NM_008905, intron 3 of 24)	-4112.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	5.72	3.23	2.77	4.05	1.87	1.61	5.28	1.33	3.12
Merged-chr5-10682966-3	chr5	10682473	10683473	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-182056.0	NR_003596	623849.0	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	4.0	8.75	1.85	1.35	7.46	1.61	3.17	3.98	3.75
Merged-chr10-57799661-3	chr10	57799170	57800170	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020561, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	5126.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	13.73	15.21	9.25	17.54	14.93	19.29	29.57	20.78	11.24
Merged-chr10-69223331-3	chr10	69222838	69223838	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	10144.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	16.02	23.96	20.35	35.76	14.93	23.31	33.8	16.36	24.98
Merged-chr3-79520106-3	chr3	79519588	79520588	+	941.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	47591.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	21.17	11.52	10.17	20.24	11.2	9.65	11.62	13.27	8.74
Merged-chr4-41503201-3	chr4	41502703	41503703	+	941.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085515)	promoter-TSS (NM_001085515)	-128.0	NM_001085515	329828.0	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|Myorg|NET37	expressed sequence AI464131	protein-coding	4.0	2.3	0.0	4.72	1.4	3.22	5.28	2.21	1.25
Merged-chr14-50896300-3	chr14	50895790	50896790	+	941.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3035.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	22.88	25.8	27.75	20.24	11.66	27.33	20.07	11.5	9.99
Merged-chr10-93487586-1	chr10	93487086	93488086	+	941.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1182.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	22.31	18.43	12.95	64.77	37.32	18.49	11.62	6.63	2.5
Merged-chr2-129301503-2	chr2	129301098	129302098	+	941.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	4228.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	36.61	27.19	37.0	20.24	11.66	53.05	38.02	36.7	36.85
Merged-chr15-84183546-3	chr15	84183045	84184045	+	941.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054088, intron 7 of 7)	intron (NM_054088, intron 7 of 7)	-8688.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	57.78	71.42	82.32	36.43	48.05	87.61	86.61	101.26	59.95
Merged-chr17-50393478-3	chr17	50392976	50393976	+	941.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99856.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	73.79	58.52	50.87	29.01	21.46	27.33	135.19	118.5	53.08
Merged-chr5-43867957-3	chr5	43867457	43868457	+	941.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007646)	promoter-TSS (NM_007646)	-852.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	182.49	216.57	160.02	242.9	190.8	196.12	250.32	246.29	147.39
Merged-chr7-27929493-3	chr7	27928989	27929989	+	941.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028538)	promoter-TSS (NM_028538)	-59.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	33.75	45.16	36.07	27.66	51.78	43.4	45.42	35.37	27.48
Merged-chr17-78315936-3	chr17	78315478	78316478	+	941.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 7 of 16)	intron (NM_015800, intron 7 of 16)	102174.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.86	5.53	1.85	13.49	14.0	14.47	8.45	9.29	1.87
Merged-chr17-36849664-3	chr17	36849178	36850178	+	941.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	12532.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	34.32	39.17	34.22	36.43	26.59	35.37	57.03	39.8	27.48
Merged-chr3-60580084-3	chr3	60579600	60580600	+	941.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	RMER10A|LTR|ERVL	78921.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	36.61	40.55	52.72	58.03	48.98	57.87	40.14	61.9	31.85
Merged-chr6-134630590-3	chr6	134630088	134631088	+	941.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 1 of 3)	Charlie4a|DNA|hAT-Charlie	1900.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	14.87	7.83	7.4	7.42	7.93	6.43	7.39	1.33	12.49
Merged-chr2-66142416-3	chr2	66141866	66142866	+	941.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17573.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	30.32	25.34	27.75	26.31	20.06	23.31	23.24	16.36	20.61
Merged-chr15-99026436-3	chr15	99025947	99026947	+	941.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3444.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	15.45	10.6	14.8	13.49	2.8	16.08	9.51	6.63	8.12
Merged-chr2-167367550-2	chr2	167367039	167368039	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18361.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	38.9	15.21	11.1	51.28	14.46	13.66	41.19	19.01	13.12
Merged-chr11-3132175-3	chr11	3131671	3132671	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003517)	TTS (NR_003517)	8150.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	50.34	67.27	89.72	65.45	60.18	127.0	9.51	5.31	116.16
Merged-chr17-56476106-1	chr17	56475606	56476606	+	941.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	CpG	374.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	21.74	7.37	9.25	11.47	7.0	8.84	17.96	13.27	13.74
Merged-chr11-103363134-2	chr11	103362619	103363619	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	573.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	162.46	146.53	163.72	167.33	162.81	127.8	148.92	184.38	84.94
Merged-chr10-54060049-3	chr10	54059543	54060543	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	15753.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	12.59	18.43	8.32	21.59	10.73	18.49	10.56	7.96	2.5
Merged-chr13-112084640-2	chr13	112084150	112085150	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-203801.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.58	3.23	1.85	8.77	5.6	11.25	0.0	2.21	12.49
Merged-chr11-96837566-1	chr11	96837066	96838066	+	941.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7598.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	6.29	1.38	3.7	2.02	0.47	3.22	4.22	3.54	2.5
Merged-chr6-33273127-2	chr6	33272625	33273625	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 2 of 9)	B1F|SINE|Alu	23997.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	6.86	8.29	5.55	4.05	5.6	4.82	2.11	11.05	8.74
Merged-chr14-54578374-3	chr14	54577888	54578888	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010590)	promoter-TSS (NM_010590)	-727.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	5.72	12.9	9.25	15.52	8.86	25.72	34.85	47.31	41.84
Merged-chr11-76897982-3	chr11	76897469	76898469	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6576.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	18.88	26.73	16.65	34.41	15.86	8.04	22.18	26.09	18.74
Merged-chr2-31770835-3	chr2	31770361	31771361	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	10688.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	267.72	308.26	191.47	238.85	166.54	183.26	188.0	234.35	146.76
Merged-chr19-44401855-1	chr19	44401355	44402355	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009127, exon 4 of 6)	exon (NM_009127, exon 4 of 6)	5854.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	9.15	4.15	1.85	9.45	5.6	10.45	4.22	2.65	1.25
Merged-chr17-30495440-1	chr17	30494940	30495940	+	941.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	ORR1F|LTR|ERVL-MaLR	80847.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	18.88	14.75	17.57	6.07	4.2	3.22	7.39	8.4	4.37
Merged-chr18-67974065-1	chr18	67973565	67974565	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40892.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	13.16	12.9	15.72	16.87	26.59	12.86	7.39	8.84	6.87
Merged-chr7-47013132-1	chr7	47012632	47013632	+	941.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4718.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	25.74	19.35	17.57	26.31	20.99	9.65	36.97	15.48	34.97
Merged-chr12-35042081-3	chr12	35041568	35042568	+	940.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5121.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	93.82	98.15	66.6	74.22	35.92	83.59	58.09	32.28	23.73
Merged-chr18-53951276-3	chr18	53950784	53951784	+	940.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 12 of 12)	intron (NM_152809, intron 12 of 12)	89171.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.44	14.28	5.55	19.57	10.73	4.02	10.56	8.4	13.74
Merged-chr3-127299600-3	chr3	127299094	127300094	+	940.927795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	109464.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	13.73	12.44	12.02	7.42	5.6	15.27	14.79	20.34	6.87
Merged-chr19-53394818-3	chr19	53394335	53395335	+	940.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4201.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	6.86	6.91	11.1	8.1	5.13	14.47	6.34	7.07	4.37
Merged-chr7-25278398-3	chr7	25277891	25278891	+	940.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302811, intron 2 of 20)	CpG	-3788.0	NM_027882	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	93.82	107.82	106.37	82.32	97.97	112.53	108.79	124.69	71.82
Merged-chr9-40521337-2	chr9	40520828	40521828	+	940.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	10055.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.43	10.6	2.77	8.1	8.4	8.84	5.28	3.54	6.25
Merged-chr11-121747172-3	chr11	121746667	121747667	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44740.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	85.81	109.21	65.67	112.0	106.36	151.92	153.15	176.87	124.91
Merged-chr7-101070565-3	chr7	101070061	101071061	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38214.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	38.9	12.9	34.22	26.31	13.06	20.9	31.69	4.42	18.11
Merged-chr2-73064204-3	chr2	73063697	73064697	+	940.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83751.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	24.6	6.45	5.55	32.39	10.73	20.09	27.46	18.57	6.87
Merged-chr9-41135020-3	chr9	41134505	41135505	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	23057.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	45.19	29.49	41.62	44.53	21.46	36.17	28.52	21.22	21.86
Merged-chr3-51228225-3	chr3	51227744	51228744	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	B3|SINE|B2	3797.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	8.01	5.99	4.62	13.49	7.93	11.25	11.62	4.86	16.24
Merged-chr13-54590825-3	chr13	54590329	54591329	+	940.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178605)	promoter-TSS (NM_178605)	598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	201.36	191.23	197.94	162.61	152.08	137.45	149.98	180.4	121.16
Merged-chr19-12475578-3	chr19	12475076	12476076	+	940.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172442, intron 7 of 8)	intron (NM_172442, intron 7 of 8)	14797.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	36.61	48.38	31.45	26.99	16.79	4.82	91.89	96.83	58.71
Merged-chr2-72476182-3	chr2	72475676	72476676	+	940.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025866)	promoter-TSS (NM_025866)	-43.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	18.31	16.13	22.2	15.52	13.53	9.65	33.8	24.32	17.49
Merged-chr15-3259298-3	chr15	3258793	3259793	+	940.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11474.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	13.73	14.28	7.4	20.92	21.46	24.11	12.67	10.61	10.62
Merged-chr13-40971448-3	chr13	40970961	40971961	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-29549.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	8.58	11.06	5.55	12.82	7.0	19.29	11.62	8.4	3.75
Merged-chr14-45006020-3	chr14	45005464	45006464	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17853.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	15.45	14.75	18.5	20.92	9.33	26.53	10.56	6.63	10.62
Merged-chr4-133633553-3	chr4	133633040	133634040	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017968)	promoter-TSS (NM_001017968)	-111.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	28.03	18.43	31.45	37.78	28.46	45.82	21.12	9.29	14.99
Merged-chr15-100729462-3	chr15	100728952	100729952	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161767)	promoter-TSS (NM_001161767)	-76.0	NM_172451	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	262.57	217.03	111.92	211.86	183.8	147.9	160.54	141.05	59.95
Merged-chr10-80510495-3	chr10	80509978	80510978	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	15572.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	36.61	11.98	5.55	31.04	20.53	9.65	30.63	17.24	7.49
Merged-chr6-22003091-3	chr6	22002603	22003603	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	17193.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	3.43	4.15	4.62	4.72	7.46	3.22	4.22	3.1	6.25
Merged-chr8-68954063-3	chr8	68953563	68954563	+	940.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73508.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	26.89	28.11	6.47	36.43	21.93	35.37	76.05	76.05	31.85
Merged-chr4-89351680-2	chr4	89351188	89352188	+	940.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-40656.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	12.59	22.58	1.85	27.66	13.53	13.66	6.34	17.24	8.74
Merged-chr15-64060558-4	chr15	64060108	64061108	+	940.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144846)	promoter-TSS (NM_144846)	-160.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	274.01	201.36	253.44	226.03	147.88	196.12	235.53	147.68	136.15
Merged-chr8-69038521-2	chr8	69038013	69039013	+	940.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153054, exon 17 of 17)	3' UTR (NM_153054, exon 17 of 17)	-50223.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	13.16	16.59	7.4	28.34	35.92	56.27	35.91	46.87	34.97
Merged-chr3-148982504-3	chr3	148981997	148982997	+	940.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27862.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	17.73	15.67	16.65	39.81	27.52	38.58	13.73	7.96	1.25
Merged-chr2-131037326-3	chr2	131036824	131037824	+	940.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3074.0	NR_105969	102465606.0		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	19.45	11.98	26.82	21.59	25.19	57.87	7.39	10.17	23.73
Merged-chr4-53239084-3	chr4	53238603	53239603	+	940.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-7093.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	10.87	9.68	14.8	14.84	12.13	11.25	8.45	6.63	6.25
Merged-chr16-4584702-2	chr16	4584191	4585191	+	940.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10022.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	11.44	6.45	5.55	4.72	2.8	6.43	8.45	3.54	5.0
Merged-chr8-26887087-4	chr8	26886645	26887645	+	940.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-62722.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	38.9	41.47	37.0	54.65	37.79	40.19	49.64	53.94	24.98
Merged-chr11-31902480-3	chr11	31901984	31902984	+	940.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	31544.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	24.6	22.58	24.97	19.57	24.26	32.96	40.14	23.43	21.23
Merged-chr3-95652584-3	chr3	95652090	95653090	+	940.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6131.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	282.02	298.59	194.24	296.88	211.79	200.95	250.32	290.06	210.47
Merged-chr3-79177319-3	chr3	79176787	79177787	+	940.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31412.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	114.41	144.69	90.65	101.21	84.44	108.51	108.79	149.45	87.43
Merged-chr17-43534989-3	chr17	43534496	43535496	+	940.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254953, exon 3 of 3)	exon (NM_001254953, exon 3 of 3)	8643.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	8.58	25.34	12.95	16.19	20.99	30.54	7.39	16.8	16.24
Merged-chr12-102430000-4	chr12	102429569	102430569	+	940.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	9744.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	102.4	84.78	70.3	76.92	62.05	114.94	31.69	45.1	34.35
Merged-chr5-147758250-3	chr5	147757742	147758742	+	940.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32254.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	33.18	66.35	88.8	29.01	55.05	55.46	111.96	116.29	51.21
Merged-chr15-76091728-3	chr15	76091236	76092236	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358359)	promoter-TSS (NM_001358359)	-46.0	NM_001358359	223649.0	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	5.72	2.3	0.0	6.75	0.47	1.61	1.06	0.0	2.5
Merged-chr11-83020872-3	chr11	83020385	83021385	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167743)	promoter-TSS (NM_001167743)	-75.0	NM_181545	276950.0	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	177.34	240.07	167.42	113.35	117.56	88.42	144.7	161.83	80.56
Merged-chr3-133547065-3	chr3	133546553	133547553	+	940.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	34.9	33.64	33.3	37.11	27.52	42.6	30.63	34.49	33.1
Merged-chr7-137405396-2	chr7	137404888	137405888	+	940.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029886, intron 1 of 3)	L1MEc|LINE|L1	5368.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	9.15	16.59	12.95	22.94	18.19	19.29	38.02	26.09	25.61
Merged-chr11-86576191-3	chr11	86575684	86576684	+	940.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7974.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	88.1	83.4	86.02	115.38	69.98	95.65	70.76	68.98	71.2
Merged-chr10-79925472-3	chr10	79924977	79925977	+	940.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1566.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	8.01	11.98	1.85	14.17	9.8	11.25	8.45	11.94	12.49
Merged-chr9-77686054-2	chr9	77685560	77686560	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49328.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	9.15	19.35	12.95	13.49	7.46	8.84	19.01	10.17	8.74
Merged-chr15-74924142-2	chr15	74923635	74924635	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30916.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	137.29	94.0	122.09	58.7	46.18	65.91	74.99	92.86	26.23
Merged-chr7-24389655-3	chr7	24389137	24390137	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9991.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	20.02	17.97	18.5	18.22	15.86	12.86	79.21	58.81	51.84
Merged-chr8-72323845-1	chr8	72323345	72324345	+	940.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4783.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	51.48	60.82	38.85	52.63	39.19	53.85	40.14	33.16	44.34
Merged-chr15-36231422-1	chr15	36230922	36231922	+	940.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012031, intron 16 of 18)	intron (NM_012031, intron 16 of 18)	8742.0	NR_106173	102465888.0		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	4.0	2.3	1.85	0.67	4.67	11.25	2.11	2.65	3.75
Merged-chr5-67823914-3	chr5	67823413	67824413	+	940.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	23518.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	22.31	32.72	39.77	39.81	33.12	31.35	49.64	43.77	21.23
Merged-chr9-63960529-3	chr9	63960043	63961043	+	940.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	61516.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	8.01	3.69	11.1	24.96	11.66	9.65	5.28	6.19	6.87
Merged-chr5-105684150-3	chr5	105683659	105684659	+	940.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15810.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	61.21	47.0	48.1	69.5	51.32	24.92	25.35	15.92	19.36
Merged-chr10-8878994-3	chr10	8878495	8879495	+	940.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	B1F|SINE|Alu	7075.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	72.08	40.55	43.47	82.99	35.45	65.11	73.93	41.12	49.34
Merged-chr8-123478598-3	chr8	123478110	123479110	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028260, intron 1 of 15)	RMER15|LTR|ERVL	748.0	NR_028260	114896.0	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	231.11	237.76	147.99	221.98	213.66	176.83	246.09	272.37	116.79
Merged-chr6-4902981-3	chr6	4902470	4903470	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181595)	promoter-TSS (NM_181595)	-350.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	61.78	40.09	45.32	56.0	36.85	39.39	54.92	31.39	23.73
Merged-chr16-92868718-3	chr16	92868215	92869215	+	940.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42641.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	117.27	88.47	54.57	154.51	78.37	135.04	105.62	114.08	60.58
Merged-chr4-145286934-3	chr4	145286439	145287439	+	940.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 8 of 12)	intron (NM_009401, intron 8 of 12)	28208.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	7.44	3.23	7.4	9.45	5.13	8.04	6.34	7.52	1.25
Merged-chr14-46981295-3	chr14	46980771	46981771	+	940.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-20069.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	8.01	6.91	3.7	9.45	5.13	1.61	9.51	6.19	1.25
Merged-chr7-25784289-2	chr7	25783796	25784796	+	940.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	4437.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	36.61	30.87	43.47	34.41	49.92	36.17	57.03	57.04	38.72
Merged-chr15-87074428-3	chr15	87073914	87074914	+	940.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-469885.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	45.19	69.58	47.17	100.53	108.23	75.56	88.72	87.11	61.2
Merged-chr2-150672962-3	chr2	150672468	150673468	+	940.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4728.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	44.05	44.24	41.62	92.44	58.78	46.62	42.25	46.87	12.49
Merged-chr6-89405193-3	chr6	89404694	89405694	+	940.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 5 of 6)	intron (NM_001167736, intron 5 of 6)	-42581.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	9.15	10.6	9.25	8.77	10.73	11.25	6.34	11.05	11.24
Merged-chr6-70856142-3	chr6	70855651	70856651	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	Lx9|LINE|L1	11636.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	110.41	129.02	85.1	82.99	86.77	90.02	97.17	113.64	75.57
Merged-chr13-47038194-1	chr13	47037694	47038694	+	940.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016785, intron 3 of 8)	intron (NM_016785, intron 3 of 8)	5023.0	NM_016785	22017.0	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	2.29	4.15	7.4	4.05	3.27	4.82	30.63	36.26	23.73
Merged-chr7-73559340-3	chr7	73558829	73559829	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037569)	promoter-TSS (NR_037569)	-934.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	324.93	403.65	214.59	304.97	364.34	248.37	290.45	441.28	166.12
Merged-chr16-76363849-3	chr16	76363337	76364337	+	940.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	9212.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	135.0	135.47	98.97	93.79	87.24	81.99	121.46	137.96	59.95
Merged-chr3-79158421-3	chr3	79157939	79158939	+	940.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-12564.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	20.59	20.27	28.67	34.41	20.53	45.01	28.52	22.11	16.24
Merged-chr11-87758777-7	chr11	87758178	87759178	+	940.3095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1723.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	47.48	43.31	37.0	30.36	23.33	28.13	40.14	29.63	28.73
Merged-chr10-127177965-3	chr10	127177498	127178498	+	940.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177615, exon 5 of 17)	exon (NM_177615, exon 5 of 17)	2647.0	NM_177615	216441.0	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	6.29	0.92	3.7	2.7	1.4	1.61	4.22	0.88	2.5
Merged-chr17-64715470-2	chr17	64714964	64715964	+	940.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-51647.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	8.01	7.37	17.57	12.82	8.4	20.9	6.34	3.54	9.37
Merged-chr1-16518950-4	chr1	16518510	16519510	+	940.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347044, exon 1 of 14)	5' UTR (NM_001347044, exon 1 of 14)	105.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	46.91	25.8	30.52	58.7	32.66	38.58	43.3	11.5	23.73
Merged-chr13-102889092-3	chr13	102888587	102889587	+	940.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128832.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	50.34	49.76	76.77	46.56	32.19	34.56	72.88	50.85	39.97
Merged-chr11-70466406-3	chr11	70465911	70466911	+	940.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6427.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	94.96	76.03	29.6	107.95	59.25	69.93	68.65	93.74	68.7
Merged-chr1-135670565-3	chr1	135670060	135671060	+	940.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49503.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	22.31	16.59	14.8	41.16	27.99	38.58	27.46	16.8	10.62
Merged-chr13-73469635-3	chr13	73469133	73470133	+	940.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	2250.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	28.6	13.36	42.55	18.89	19.13	8.84	27.46	16.8	10.62
Merged-chr10-86947688-1	chr10	86947188	86948188	+	940.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 17 of 68)	intron (NM_138673, intron 17 of 68)	60254.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.58	6.91	10.17	13.49	4.2	16.88	7.39	2.65	11.24
Merged-chr14-103376949-3	chr14	103376459	103377459	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30159.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	29.17	16.13	23.12	18.22	13.53	22.51	31.69	18.13	23.11
Merged-chr13-60674499-3	chr13	60673967	60674967	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	72256.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	202.51	231.31	183.14	189.6	167.94	208.18	197.51	250.27	124.91
Merged-chrX-12080381-3	chrX	12079762	12080762	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175046, exon 1 of 14)	5' UTR (NM_175046, exon 1 of 14)	291.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	54.92	35.48	53.65	46.56	20.53	37.78	50.7	39.35	28.73
Merged-chr7-35124954-3	chr7	35124463	35125463	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5670.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	18.31	17.05	12.02	23.62	7.46	19.29	13.73	5.75	13.12
Merged-chr4-135314644-3	chr4	135314161	135315161	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38553.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	435.9	434.06	248.81	437.22	322.36	247.57	279.89	393.09	176.74
Merged-chr16-93142290-3	chr16	93141770	93142770	+	940.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210919.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	13.73	10.14	6.47	11.47	7.46	16.88	13.73	6.63	7.49
Merged-chr2-166235096-3	chr2	166234593	166235593	+	940.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38815.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	7.44	8.29	6.47	16.19	9.8	12.86	10.56	9.29	11.24
Merged-chr5-43853443-3	chr5	43852930	43853930	+	940.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15379.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	40.62	39.17	29.6	114.03	108.23	100.47	50.7	52.62	30.6
Merged-chr3-144693285-2	chr3	144692770	144693770	+	940.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	27065.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	6.86	22.12	30.52	14.84	21.93	40.19	22.18	28.3	24.36
Merged-chr2-129597496-4	chr2	129596925	129597925	+	940.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1963.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	158.46	158.05	94.35	151.14	130.16	154.33	153.15	169.79	118.66
Merged-chr10-59369645-2	chr10	59369132	59370132	+	940.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001316371, exon 14 of 15)	exon (NM_001316371, exon 14 of 15)	-34053.0	NM_023530	69836.0	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	5.72	3.69	5.55	8.77	6.53	15.27	6.34	2.65	3.75
Merged-chr9-70650462-3	chr9	70649959	70650959	+	940.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	intron (NM_172772, intron 1 of 8)	6715.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	86.38	79.25	67.52	105.93	96.57	59.48	108.79	105.68	67.45
Merged-chr5-125052910-3	chr5	125052462	125053462	+	940.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	49487.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	36.04	21.66	42.55	25.64	24.72	31.35	20.07	16.36	8.74
Merged-chr3-144679382-3	chr3	144678874	144679874	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	40961.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	82.95	87.09	61.05	100.53	76.04	61.09	21.12	17.24	13.12
Merged-chr8-108994591-3	chr8	108994095	108995095	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57735.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	64.07	67.27	30.52	62.07	43.85	49.83	70.76	87.11	48.09
Merged-chr2-166492022-3	chr2	166491513	166492513	+	940.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	44562.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	30.89	17.97	12.95	68.82	27.52	29.74	55.98	37.14	14.36
Merged-chr9-118913237-3	chr9	118912737	118913737	+	940.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13299.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	8.01	5.99	15.72	10.8	7.46	11.25	6.34	3.98	11.24
Merged-chr3-126771739-3	chr3	126771241	126772241	+	940.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 6 of 18)	intron (NM_001025438, intron 6 of 18)	171645.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	12.59	2.76	5.55	9.45	6.53	6.43	7.39	7.52	3.75
Merged-chr11-106994444-2	chr11	106993941	106994941	+	940.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010655, intron 3 of 10)	Lx8|LINE|L1	5084.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	9.15	11.98	7.4	13.49	10.26	8.04	31.69	39.35	19.98
Merged-chr2-122619698-2	chr2	122619193	122620193	+	940.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8416.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	21.74	10.14	24.05	26.31	14.0	16.88	3.17	5.75	0.0
Merged-chr11-105592086-3	chr11	105591578	105592578	+	940.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181071, intron 1 of 25)	intron (NM_181071, intron 1 of 25)	2092.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	36.04	49.76	15.72	21.59	24.26	32.96	29.57	24.76	16.86
Merged-chr12-4160535-3	chr12	4160052	4161052	+	940.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	26399.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	46.91	51.61	46.25	74.22	70.44	65.91	36.97	30.95	28.73
Merged-chr13-90050030-3	chr13	90049520	90050520	+	940.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	39588.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	9.72	6.91	0.0	2.7	3.27	4.02	5.28	7.07	1.87
Merged-chr2-11426887-3	chr2	11426378	11427378	+	940.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28378.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	16.59	27.65	1.85	35.09	30.79	21.7	36.97	11.94	3.75
Merged-chr11-29885373-3	chr11	29884881	29885881	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-59713.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	3.43	13.82	5.55	9.45	1.87	4.82	7.39	7.07	7.49
Merged-chr11-115051379-3	chr11	115050899	115051899	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172050)	TTS (NM_172050)	-3104.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	26.89	36.86	21.27	6.75	7.93	17.68	15.84	15.03	14.99
Merged-chr1-105906596-3	chr1	105906086	105907086	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83696.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	9.72	9.68	3.7	15.52	4.67	9.65	10.56	1.77	1.25
Merged-chr6-99401405-1	chr6	99400905	99401905	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 1 of 18)	intron (NM_053202, intron 1 of 18)	33940.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.0	2.76	9.25	6.75	5.13	6.43	6.34	2.21	9.99
Merged-chr13-81014071-1	chr13	81013571	81014571	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	49997.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.86	3.23	6.47	3.37	3.73	0.0	7.39	1.77	1.25
Merged-chr10-60290630-1	chr10	60290130	60291130	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	6169.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	28.03	26.73	38.85	26.99	21.93	49.83	38.02	33.16	28.73
Merged-chr6-125166202-1	chr6	125165702	125166702	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008084)	promoter-TSS (NM_008084)	265.0	NM_001289726	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	210.52	163.58	162.79	178.8	102.63	171.21	205.96	216.66	140.52
Merged-chr2-45106565-2	chr2	45106165	45107165	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	3612.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	80.09	102.75	77.7	96.48	75.11	107.71	135.19	132.65	88.68
Merged-chr10-25319232-1	chr10	25318732	25319732	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20069.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	42.9	52.99	21.27	56.0	76.97	35.37	49.64	65.44	28.73
Merged-chr12-79007210-2	chr12	79006726	79007726	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178745)	promoter-TSS (NM_178745)	51.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	73.79	77.87	62.9	96.48	62.05	118.96	99.28	62.79	55.58
Merged-chr14-50825569-2	chr14	50825069	50826069	+	940.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009351, intron 51 of 54)	intron (NM_009351, intron 51 of 54)	17653.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	10.3	23.5	11.1	18.22	7.46	20.9	13.73	23.43	33.1
Merged-chr9-99107854-2	chr9	99107367	99108367	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	32344.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	48.05	42.85	69.37	67.47	49.92	67.52	79.21	89.76	47.46
Merged-chr8-72281781-2	chr8	72281287	72282287	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37275.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	5.72	0.46	2.77	8.77	9.33	8.04	5.28	2.65	6.25
Merged-chr16-42180180-1	chr16	42179680	42180680	+	940.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001361282, exon 11 of 11)	3' UTR (NM_001361282, exon 11 of 11)	123289.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.0	2.3	0.0	3.37	6.06	3.22	0.0	3.1	4.37
Merged-chr7-5016241-3	chr7	5015746	5016746	+	939.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025324, intron 1 of 1)	MIRb|SINE|MIR	738.0	NM_025324	66056.0	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	107.55	83.4	98.05	116.73	70.91	97.26	126.74	112.75	56.21
Merged-chr19-12002333-3	chr19	12001826	12002826	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34414.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	22.88	10.6	7.4	18.22	11.2	5.63	10.56	7.52	11.24
Merged-chr11-6562539-3	chr11	6562056	6563056	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190344, intron 2 of 9)	intron (NM_001190344, intron 2 of 9)	2373.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	40.62	33.18	47.17	52.63	32.19	59.48	32.74	28.74	20.61
Merged-chr16-55526663-3	chr16	55526147	55527147	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31916.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	21.74	24.42	11.1	13.49	15.39	25.72	15.84	21.67	23.73
Merged-chr15-57970363-3	chr15	57969863	57970863	+	939.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081396)	TTS (NM_001081396)	-15540.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.86	3.69	5.55	4.72	2.33	1.61	5.28	2.65	3.75
Merged-chr11-21421780-3	chr11	21421264	21422264	+	939.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50497.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	27.46	18.43	23.12	24.96	17.73	33.76	22.18	16.36	21.86
Merged-chr13-47224108-3	chr13	47223645	47224645	+	939.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30142.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	69.22	69.12	60.12	97.83	82.11	131.82	58.09	49.52	68.07
Merged-chr11-108445458-2	chr11	108444943	108445943	+	939.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029606, intron 5 of 27)	intron (NM_029606, intron 5 of 27)	20177.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.57	4.61	9.25	6.75	7.93	9.65	8.45	8.84	5.0
Merged-chr16-30390741-3	chr16	30390253	30391253	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2223.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	90.38	62.67	47.17	105.26	54.58	61.89	85.55	86.66	43.72
Merged-chr2-45111753-3	chr2	45111260	45112260	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110571)	promoter-TSS (NR_110571)	-500.0	NR_110571	433424.0	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	153.88	127.64	82.32	197.02	98.9	122.18	207.01	137.51	111.17
Merged-chr6-35253183-3	chr6	35252687	35253687	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027875, intron 1 of 2)	intron (NR_027875, intron 1 of 2)	455.0	NR_027875	67705.0	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	94.39	81.1	47.17	138.32	142.75	54.66	91.89	91.53	46.22
Merged-chr1-133163918-3	chr1	133163421	133164421	+	939.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32755.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	13.73	2.76	5.55	8.1	5.13	2.41	3.17	2.21	5.0
Merged-chr2-14262327-3	chr2	14261844	14262844	+	939.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 6 of 29)	intron (NM_008625, intron 6 of 29)	1341.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	25.74	33.64	18.5	41.16	21.93	45.01	46.47	27.86	23.11
Merged-chr5-72224606-3	chr5	72224095	72225095	+	939.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	21252.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	76.08	61.75	46.25	98.51	50.85	69.93	88.72	86.22	40.59
Merged-chr11-40855969-3	chr11	40855465	40856465	+	939.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-100679.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	20.02	16.13	11.1	10.8	17.26	15.27	12.67	8.4	14.99
Merged-chr1-75251727-3	chr1	75251198	75252198	+	939.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359281, intron 19 of 22)	intron (NM_001359281, intron 19 of 22)	12073.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	13.16	5.07	7.4	9.45	3.27	3.22	2.11	7.07	3.75
Merged-chr17-23676786-3	chr17	23676250	23677250	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013749, intron 1 of 3)	CpG	699.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	43.48	27.19	24.97	41.16	31.26	28.94	43.3	25.65	17.49
Merged-chr12-57464859-2	chr12	57464368	57465368	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81243.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	5.72	9.68	12.95	10.8	5.6	8.04	2.11	1.33	5.0
Merged-chr18-56699201-3	chr18	56698697	56699697	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.58	7.83	12.95	15.52	15.39	14.47	41.19	39.35	29.35
Merged-chr7-30917418-3	chr7	30916912	30917912	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-2490.0	NM_010758	17136.0	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	18.88	9.22	21.27	18.89	7.93	12.06	30.63	19.46	13.74
Merged-chr2-155402157-1	chr2	155401657	155402657	+	939.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019825, intron 11 of 13)	intron (NM_019825, intron 11 of 13)	20301.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	17.16	11.06	3.7	12.14	11.2	16.08	12.67	9.29	6.25
Merged-chr16-95836222-3	chr16	95835733	95836733	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	62480.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	11.44	11.52	0.92	8.77	7.93	0.0	13.73	4.42	1.25
Merged-chr14-54392709-3	chr14	54392203	54393203	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	RSINE1|SINE|B4	16769.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	71.51	61.75	43.47	100.53	60.65	86.81	50.7	39.35	18.11
Merged-chr11-50286562-3	chr11	50286071	50287071	+	939.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	5765.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	76.08	91.24	43.47	56.68	52.72	91.63	76.05	65.0	77.44
Merged-chr4-10962590-3	chr4	10962072	10963072	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45047.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	11.44	11.52	8.32	13.49	9.33	11.25	15.84	20.78	15.61
Merged-chr2-6442523-3	chr2	6442036	6443036	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080548, exon 15 of 15)	3' UTR (NM_001080548, exon 15 of 15)	89800.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.58	4.61	2.77	5.4	8.86	9.65	12.67	3.1	12.49
Merged-chr6-31123528-3	chr6	31123047	31124047	+	939.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-60454.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	185.92	145.61	118.39	176.1	143.68	173.62	221.8	204.72	125.53
Merged-chr11-98026710-2	chr11	98026204	98027204	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159483)	promoter-TSS (NM_001159483)	-6.0	NM_001159483	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	342.66	393.51	289.51	346.13	361.08	311.87	327.42	383.36	190.48
Merged-chr4-45514328-4	chr4	45513895	45514895	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	16433.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	117.84	103.22	47.17	134.27	78.37	94.04	99.28	80.47	41.84
Merged-chr9-100376828-2	chr9	100376332	100377332	+	939.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109641.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	12.59	9.22	5.55	14.17	6.06	12.86	3.17	3.98	4.37
Merged-chr2-120309402-3	chr2	120308899	120309899	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024145, intron 7 of 19)	intron (NM_001024145, intron 7 of 19)	4766.0	NM_001024145	271844.0	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	21.74	6.45	5.55	14.84	7.93	2.41	10.56	7.07	8.74
Merged-chr9-94605156-3	chr9	94604650	94605650	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64742.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	11.44	3.69	4.62	8.77	7.0	6.43	3.17	5.75	7.49
Merged-chr19-5274320-3	chr19	5273823	5274823	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030109, exon 21 of 21)	3' UTR (NM_030109, exon 21 of 21)	-1204.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	58.92	83.86	79.55	82.99	61.58	90.02	73.93	105.68	82.44
Merged-chr1-36789632-3	chr1	36789118	36790118	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10634.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	13.73	11.52	10.17	3.37	1.87	3.22	6.34	2.65	3.12
Merged-chr9-40834838-3	chr9	40834323	40835323	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33550.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.3	9.68	10.17	4.05	11.2	15.27	19.01	20.34	14.36
Merged-chr2-60865167-3	chr2	60864674	60865674	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	16264.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	57.78	33.18	30.52	64.77	42.92	32.96	50.7	50.85	7.49
Merged-chr4-97924071-3	chr4	97923562	97924562	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	146436.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	22.88	12.9	23.12	18.89	15.39	13.66	12.67	12.82	5.0
Merged-chr4-56055275-3	chr4	56054775	56055775	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-522800.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	17.73	21.2	12.95	11.47	9.8	4.82	25.35	20.78	7.49
Merged-chr8-26979211-3	chr8	26978723	26979723	+	939.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1887.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	69.22	74.19	59.2	57.35	57.85	94.85	68.65	64.11	61.2
Merged-chr10-37397639-5	chr10	37397120	37398120	+	939.703003	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258694.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	98.97	74.65	82.32	60.72	64.38	56.27	91.89	82.69	53.71
Merged-chr10-81338773-1	chr10	81338273	81339273	+	939.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148951, intron 4 of 5)	RSINE1|SINE|B4	4493.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	4.0	1.84	6.47	4.05	7.93	4.02	7.39	5.31	1.25
Merged-chr2-91485909-3	chr2	91485404	91486404	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 17 of 38)	exon (NM_172668, exon 17 of 38)	28373.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	173.9	227.17	184.99	221.98	223.92	170.4	182.72	229.48	103.67
Merged-chr10-96280420-1	chr10	96279920	96280920	+	939.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54213.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	9.72	3.23	11.1	14.84	7.93	8.04	6.34	9.73	3.75
Merged-chr4-16112648-3	chr4	16112144	16113144	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50999.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	8.01	2.3	0.0	3.37	3.27	2.41	6.34	3.1	5.0
Merged-chr4-47262178-3	chr4	47261695	47262695	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 9 of 39)	intron (NM_009928, intron 9 of 39)	54183.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	26.31	16.13	13.87	28.34	16.79	11.25	24.29	7.96	13.74
Merged-chr11-94550351-3	chr11	94549846	94550846	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1139.0	NM_001013381	237926.0	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	45.76	32.25	49.95	10.12	4.67	9.65	8.45	5.75	6.25
Merged-chr12-84876973-3	chr12	84876482	84877482	+	939.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013589)	promoter-TSS (NM_013589)	-487.0	NM_013589	16997.0	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	7.44	2.76	3.7	2.02	2.8	1.61	1.06	1.77	2.5
Merged-chr6-32544281-2	chr6	32543776	32544776	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	33135.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	8.01	24.88	26.82	16.19	24.26	20.9	27.46	9.73	19.98
Merged-chr3-19183621-2	chr3	19183127	19184127	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3693.0	NM_001253390	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	6.86	5.99	8.32	13.49	14.46	16.08	25.35	13.71	14.99
Merged-chr4-109255374-2	chr4	109254866	109255866	+	939.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285895)	TTS (NM_001285895)	19734.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	13.16	17.97	12.02	35.09	18.66	21.7	15.84	11.05	16.86
Merged-chr6-29252316-3	chr6	29251846	29252846	+	939.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20142.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	29.17	11.06	24.97	16.19	4.2	3.22	28.52	9.73	7.49
Merged-chr13-119713280-3	chr13	119712771	119713771	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	22920.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	23.45	20.27	14.8	24.29	21.46	36.97	8.45	18.57	12.49
Merged-chr2-150648120-3	chr2	150647618	150648618	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080575, intron 2 of 13)	intron (NM_080575, intron 2 of 13)	-19376.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	12.59	12.9	7.4	12.82	17.26	6.43	10.56	11.5	3.12
Merged-chr4-58463183-3	chr4	58462687	58463687	+	939.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-22089.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	6.86	10.14	4.62	9.45	2.8	4.82	16.9	8.4	5.0
Merged-chr8-103588927-3	chr8	103588421	103589421	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14878.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	15.45	5.99	15.72	16.87	14.0	12.06	15.84	14.15	14.99
Merged-chr8-105596813-5	chr8	105596242	105597242	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8487.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	16.59	9.68	5.55	7.42	8.86	3.22	17.96	7.07	9.99
Merged-chr14-51064825-5	chr14	51064320	51065320	+	939.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Pro-CCY|tRNA|tRNA	6622.0	NM_207558	404319.0	Mm.377276	NM_207558	ENSMUSG00000035932	Olfr750	GA_x5J8B7W5WBF-6267395-6266441|GA_x6K02T2PMLR-6808276-6807281|MOR103-18	olfactory receptor 750	protein-coding	84.09	76.95	57.35	45.88	59.71	36.97	118.29	148.57	53.08
Merged-chr9-58231946-3	chr9	58231468	58232468	+	939.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178087, intron 4 of 8)	intron (NM_178087, intron 4 of 8)	10818.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	131.57	164.96	143.37	93.11	109.16	177.64	135.19	160.95	98.05
Merged-chrX-73342627-3	chrX	73342129	73343129	+	939.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031494)	promoter-TSS (NM_031494)	8.0	NM_001160229	27081.0	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	30.32	30.41	12.95	35.76	27.06	33.76	26.4	26.97	11.87
Merged-chr10-68759412-3	chr10	68758893	68759893	+	939.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	35647.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	12.01	10.14	8.32	12.82	6.53	13.66	14.79	11.05	8.74
Merged-chr6-58937481-3	chr6	58936982	58937982	+	939.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 17 of 17)	RLTR40|LTR|ERVK	-30356.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	14.3	11.52	3.7	19.57	13.06	28.94	19.01	20.34	16.86
Merged-chr2-152437678-3	chr2	152437186	152438186	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110368, intron 6 of 10)	intron (NR_110368, intron 6 of 10)	22099.0	NR_110368	228778.0	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	5.15	5.07	0.0	6.07	1.87	1.61	3.17	0.88	3.12
Merged-chr2-170217700-3	chr2	170217220	170218220	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	21.74	24.42	14.8	28.34	19.59	24.11	32.74	36.26	24.98
Merged-chr4-141651495-3	chr4	141650986	141651986	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12629.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	72.08	64.51	36.07	99.18	77.91	74.75	61.26	73.84	37.47
Merged-chr7-28808386-3	chr7	28807901	28808901	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	202.51	201.36	172.97	194.32	162.34	159.95	186.94	187.48	159.88
Merged-chr19-60588865-1	chr19	60588365	60589365	+	939.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7842.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	2.29	1.84	6.47	0.0	1.4	1.61	2.11	5.31	5.0
Merged-chr19-5661649-2	chr19	5661120	5662120	+	939.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164480, exon 2 of 17)	5' UTR (NM_001164480, exon 2 of 17)	2087.0	NM_001164482	20469.0	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	62.35	64.05	59.2	67.47	57.85	74.75	91.89	117.17	78.69
Merged-chr16-4559968-4	chr16	4559497	4560497	+	939.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031182)	promoter-TSS (NM_031182)	-277.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	36.04	36.86	40.7	53.98	46.65	60.28	44.36	38.47	31.23
Merged-chr5-120509027-3	chr5	120508515	120509515	+	939.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2177.0	NM_001177595	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	18.31	9.22	7.4	12.82	6.53	12.06	16.9	14.59	2.5
Merged-chr18-60978478-3	chr18	60977976	60978976	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14922.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	24.6	18.43	18.5	33.06	34.99	29.74	55.98	34.93	23.73
Merged-chr5-143056751-3	chr5	143056269	143057269	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	56251.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	94.39	105.52	88.8	72.19	59.71	73.95	76.05	72.52	60.58
Merged-chr13-52822387-3	chr13	52821906	52822906	+	939.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65201.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	9.72	11.98	6.47	40.48	48.05	66.71	46.47	17.69	4.37
Merged-chr3-116081923-3	chr3	116081446	116082446	+	939.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47742.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	25.17	13.36	20.35	31.04	19.59	9.65	32.74	36.7	10.62
Merged-chr15-99122685-4	chr15	99122152	99123152	+	939.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-4193.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	18.31	23.96	14.8	157.88	159.55	171.21	101.39	108.33	84.94
Merged-chr2-48950011-3	chr2	48949479	48950479	+	939.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177313)	promoter-TSS (NM_001177313)	102.0	NR_149355	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	97.25	95.84	107.29	97.16	78.84	114.14	140.47	120.71	99.3
Merged-chr13-21446961-3	chr13	21446470	21447470	+	939.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151504)	TTS (NR_151504)	1810.0	NR_035441	100316752.0		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	29.17	35.48	44.4	24.29	17.73	24.11	20.07	12.82	28.73
Merged-chr1-176818337-3	chr1	176817847	176818847	+	939.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	3687.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	180.2	196.75	104.52	223.33	169.81	106.9	161.6	186.15	94.93
Merged-chr15-81360466-3	chr15	81359965	81360965	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011399, intron 1 of 8)	intron (NM_011399, intron 1 of 8)	300.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	130.43	124.41	116.54	109.98	86.3	71.54	87.66	86.22	97.43
Merged-chr6-124729523-3	chr6	124729024	124730024	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	B1F2|SINE|Alu	3630.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	99.54	72.8	68.45	100.53	54.11	98.06	86.61	110.1	75.57
Merged-chr18-46409150-1	chr18	46408650	46409650	+	939.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56666.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	6.29	17.51	17.57	21.59	6.06	11.25	28.52	20.78	28.1
Merged-chr2-173538184-3	chr2	173537689	173538689	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15597.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	57.78	79.25	59.2	76.92	85.37	84.4	139.42	157.85	77.44
Merged-chr5-140609778-3	chr5	140609274	140610274	+	939.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	2433.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	45.76	29.95	80.47	49.25	44.78	78.77	85.55	45.99	39.35
Merged-chr11-77786376-3	chr11	77785838	77786838	+	939.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	9103.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	134.43	68.2	108.22	238.18	193.6	170.4	101.39	90.64	56.83
Merged-chr7-80011687-3	chr7	80011169	80012169	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13145.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	11.44	17.51	14.8	20.24	11.66	20.09	24.29	14.15	14.99
Merged-chr3-7496754-3	chr3	7496252	7497252	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6674.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	10.87	3.69	6.47	6.75	5.13	1.61	1.06	2.21	2.5
Merged-chr1-58770356-3	chr1	58769862	58770862	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25012.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	18.88	17.05	22.2	10.8	13.53	20.09	11.62	15.92	17.49
Merged-chr10-34280805-3	chr10	34280306	34281306	+	939.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1384.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	94.39	121.19	50.87	86.36	74.64	45.01	119.35	157.41	45.59
Merged-chr2-14233114-3	chr2	14232623	14233623	+	939.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	L2c|LINE|L2	3709.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	101.25	105.98	84.17	138.99	131.09	91.63	129.91	192.78	80.56
Merged-chr2-103842531-2	chr2	103842021	103843021	+	939.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31899.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	2.86	5.53	5.55	0.0	0.47	3.22	2.11	0.88	4.37
Merged-chr18-60523477-3	chr18	60522986	60523986	+	939.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	70.93	113.81	73.07	53.98	76.97	114.94	45.42	30.07	41.84
Merged-chr13-94162708-3	chr13	94162201	94163201	+	939.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	MTD|LTR|ERVL-MaLR	104905.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	34.9	21.66	14.8	40.48	17.26	22.51	17.96	18.57	11.87
Merged-chr6-129088744-3	chr6	129088242	129089242	+	939.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	12161.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	17.73	22.12	9.25	22.27	14.93	35.37	14.79	17.69	13.74
Merged-chr16-91612724-3	chr16	91612242	91613242	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6257.0	NM_001099738	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	108.69	65.43	43.47	118.75	67.18	77.16	234.47	201.19	116.79
Merged-chr4-58040257-3	chr4	58039752	58040752	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31128.0	NM_026132	67402.0	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	6.86	6.91	3.7	10.8	7.0	1.61	4.22	7.07	3.75
Merged-chr5-121596340-3	chr5	121595833	121596833	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2509.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	129.86	146.53	101.74	138.32	118.49	141.47	98.23	125.58	54.33
Merged-chr5-120777702-3	chr5	120777215	120778215	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145226)	promoter-TSS (NM_145226)	-56.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	81.8	57.6	43.47	62.07	66.24	47.42	76.05	79.15	32.48
Merged-chr17-31077676-3	chr17	31077164	31078164	+	939.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	19970.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	73.79	55.75	45.32	145.74	72.78	84.4	115.12	101.26	21.23
Merged-chr11-108225440-3	chr11	108224947	108225947	+	939.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	B4|SINE|B4	118441.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	20.59	18.89	8.32	6.07	8.86	0.0	12.67	13.27	8.74
Merged-chr4-108068117-3	chr4	108067625	108068625	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19232.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	52.63	59.44	60.12	44.53	36.39	52.25	87.66	75.61	52.46
Merged-chr1-167339589-3	chr1	167339091	167340091	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-10400.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	33.18	19.35	17.57	49.93	38.25	29.74	21.12	15.03	15.61
Merged-chr8-126882469-3	chr8	126881971	126882971	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	33451.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	34.9	12.9	17.57	67.47	27.52	19.29	69.71	55.27	14.36
Merged-chr1-152585736-3	chr1	152585227	152586227	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	39490.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	53.77	52.99	33.3	48.58	43.85	41.8	55.98	46.43	31.23
Merged-chr15-87074773-3	chr15	87074284	87075284	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-469515.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	40.04	70.5	43.47	114.03	112.9	85.2	87.66	98.16	69.32
Merged-chr10-22743726-3	chr10	22743223	22744223	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12276.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	26.31	41.01	46.25	29.01	13.53	36.17	13.73	8.4	21.86
Merged-chr7-122821393-3	chr7	122820906	122821906	+	939.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149053.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	33.18	27.65	24.97	47.9	40.59	24.11	68.65	67.21	27.48
Merged-chr13-113755989-2	chr13	113755494	113756494	+	939.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-38514.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	120.7	105.98	64.75	12.14	3.27	3.22	6.34	0.88	0.0
Merged-chr11-3194226-3	chr11	3193720	3194720	+	939.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030207)	promoter-TSS (NM_030207)	-757.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	56.63	81.56	104.52	93.11	113.83	166.38	82.38	49.08	130.53
Merged-chr8-117362161-3	chr8	117361658	117362658	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12988.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	37.18	27.65	32.37	30.36	26.12	22.51	44.36	26.53	12.49
Merged-chr6-50375844-3	chr6	50375345	50376345	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	6992.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	24.03	39.63	13.87	16.87	8.4	14.47	26.4	23.88	14.99
Merged-chr5-143472175-3	chr5	143471670	143472670	+	939.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7677.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	100.68	44.7	61.97	97.83	41.52	45.82	71.82	52.62	35.6
Merged-chr10-13513529-3	chr10	13513024	13514024	+	939.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025799, intron 6 of 6)	intron (NM_025799, intron 6 of 6)	12496.0	NM_025799	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	17.16	11.52	3.7	20.92	17.73	11.25	22.18	14.59	9.99
Merged-chr3-55520693-1	chr3	55520193	55521193	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 16 of 16)	intron (NM_001357475, intron 16 of 16)	58965.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.57	1.84	0.92	2.02	2.33	0.8	1.06	1.77	2.5
Merged-chr10-28463941-1	chr10	28463441	28464441	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-204419.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	4.0	3.23	6.47	5.4	2.8	16.08	0.0	2.21	1.25
Merged-chr4-46088008-2	chr4	46087520	46088520	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	48798.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	18.88	24.42	18.5	37.11	44.32	54.66	7.39	7.07	12.49
Merged-chr15-63923676-1	chr15	63923176	63924176	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_029414, intron 9 of 10)	intron (NR_029414, intron 9 of 10)	9215.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	8.01	5.53	0.0	0.67	1.4	4.82	4.22	3.1	5.62
Merged-chr8-111299436-3	chr8	111298908	111299908	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146218, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	814.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	68.65	68.2	67.52	76.24	58.78	81.18	81.33	99.49	58.08
Merged-chr8-85025198-2	chr8	85024699	85025699	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357202)	promoter-TSS (NM_001357202)	88.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	279.16	331.3	110.99	276.63	313.96	143.07	266.16	302.44	86.81
Merged-chr3-149624032-1	chr3	149623532	149624532	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	349295.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	5.72	7.83	3.7	4.72	2.33	6.43	3.17	0.0	2.5
Merged-chr1-97663061-3	chr1	97662569	97663569	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1051.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	46.91	76.49	34.22	56.0	58.78	66.71	44.36	68.54	53.71
Merged-chr13-34088450-2	chr13	34087955	34088955	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046184, intron 4 of 4)	intron (NR_046184, intron 4 of 4)	-10447.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	35.47	22.58	12.95	22.94	19.59	15.27	11.62	20.34	2.5
Merged-chr17-33956243-1	chr17	33955743	33956743	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011296)	promoter-TSS (NM_011296)	153.0	NM_001357329	224705.0	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	219.1	216.11	159.09	187.57	166.08	115.75	172.16	215.78	124.28
Merged-chr1-21161938-1	chr1	21161438	21162438	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56637.0	NM_001290679	75712.0	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	2.29	0.92	1.85	2.7	4.2	4.02	2.11	1.77	3.12
Merged-chr2-71377633-3	chr2	71377140	71378140	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10086.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	10.3	17.97	30.52	32.39	31.72	28.94	97.17	105.24	55.58
Merged-chr4-109476220-1	chr4	109475720	109476720	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013876, exon 1 of 3)	exon (NM_013876, exon 1 of 3)	285.0	NM_013876	29864.0	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	213.95	152.06	106.37	216.58	150.22	120.57	250.32	142.82	96.18
Merged-chr18-9486607-3	chr18	9486085	9487085	+	939.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36431.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	25.17	16.59	1.85	62.07	65.31	10.45	43.3	41.56	4.37
Merged-chr4-129840254-1	chr4	129839754	129840754	+	939.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008974, intron 2 of 5)	intron (NM_008974, intron 2 of 5)	19546.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	29.75	27.19	32.37	25.64	14.93	16.88	27.46	17.69	13.74
Merged-chr17-34952604-6	chr17	34952066	34953066	+	938.986084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027943)	promoter-TSS (NR_027943)	-95.0	NR_015536	68763.0	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	138.44	145.61	80.47	148.44	117.56	98.06	120.41	184.83	84.31
Merged-chr17-15830922-3	chr17	15830388	15831388	+	938.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4302.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	9.15	5.07	0.0	6.07	5.13	3.22	4.22	4.86	8.74
Merged-chr8-25096994-3	chr8	25096492	25097492	+	938.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	4819.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	31.46	29.03	24.97	31.71	16.79	17.68	45.42	28.74	25.61
Merged-chr15-6622711-3	chr15	6622201	6623201	+	938.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	MER77|LTR|ERVL	31602.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	102.97	142.38	74.92	85.01	69.04	108.51	91.89	100.37	129.28
Merged-chrX-151046946-3	chrX	151046472	151047472	+	938.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008001)	promoter-TSS (NM_008001)	-198.0	NM_008001	14163.0	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	1.72	1.38	9.25	2.02	1.4	3.22	3.17	3.98	5.0
Merged-chr4-41773687-2	chr4	41773188	41774188	+	938.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154591, intron 2 of 4)	CpG-9830	413.0	NM_001361246	20301.0	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	0.57	0.46	0.92	2.7	1.87	1.61	31.69	30.95	23.73
Merged-chr13-28959713-2	chr13	28959247	28960247	+	938.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6048.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	4.58	1.38	3.7	4.72	2.8	3.22	2.11	2.21	3.75
Merged-chr2-119873067-6	chr2	119872535	119873535	+	938.9027710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-24193.0	NM_001164274	29808.0	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	108.69	68.66	24.05	143.71	106.36	63.5	77.1	39.35	24.36
Merged-chr11-8706128-3	chr11	8705664	8706664	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41629.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	34.9	24.42	23.12	43.18	33.12	24.92	48.58	36.7	28.73
Merged-chr4-57958378-3	chr4	57957866	57958866	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1955.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	88.1	138.7	66.6	92.44	89.1	114.14	97.17	109.22	84.94
Merged-chr2-45100878-3	chr2	45100381	45101381	+	938.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9396.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	105.83	127.64	66.6	114.7	124.09	106.9	108.79	125.13	73.07
Merged-chr11-94031448-2	chr11	94030953	94031953	+	938.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027569, intron 2 of 28)	intron (NM_027569, intron 2 of 28)	-12752.0	NM_001025430	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	18.88	13.36	9.25	68.15	49.92	35.37	63.37	51.73	15.61
Merged-chr8-66495916-2	chr8	66495420	66496420	+	938.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9390.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.58	7.83	1.85	8.77	4.2	6.43	6.34	2.65	4.37
Merged-chr15-68058805-3	chr15	68058310	68059310	+	938.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	200046.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	36.61	47.0	23.12	60.72	63.91	48.23	48.58	78.71	38.1
Merged-chr14-61666072-3	chr14	61665570	61666570	+	938.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	16303.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	45.19	32.25	14.8	33.74	24.26	29.74	35.91	27.41	29.35
Merged-chr2-24367136-3	chr2	24366644	24367644	+	938.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355231)	promoter-TSS (NM_001355231)	-531.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	84.09	96.76	78.62	106.61	53.18	66.71	115.12	125.13	58.71
Merged-chr12-80083355-3	chr12	80082853	80083853	+	938.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29660.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	13.16	12.44	12.95	14.17	9.8	15.27	13.73	6.63	8.12
Merged-chr17-57194106-3	chr17	57193613	57194613	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019418)	promoter-TSS (NM_019418)	68.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	5.15	2.76	1.85	7.42	3.73	8.04	4.22	2.65	2.5
Merged-chr16-20610716-3	chr16	20610225	20611225	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177940)	promoter-TSS (NM_177940)	36.0	NM_001357404	208624.0	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	55.49	80.18	82.32	65.45	85.84	76.36	126.74	128.67	53.08
Merged-chr5-53809613-3	chr5	53809100	53810100	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144517)	promoter-TSS (NM_144517)	-27.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	5.72	6.45	4.62	6.75	10.26	6.43	5.28	5.75	8.12
Merged-chr5-23969088-3	chr5	23968580	23969580	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053090, intron 10 of 10)	intron (NM_053090, intron 10 of 10)	61232.0	NM_001310471	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	15.45	6.91	10.17	10.8	4.2	3.22	16.9	20.34	5.0
Merged-chr7-83814316-3	chr7	83813809	83814809	+	938.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19470.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	19.45	26.26	19.42	20.24	15.86	15.27	26.4	18.13	11.24
Merged-chr11-68475845-3	chr11	68475319	68476319	+	938.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 3 of 18)	intron (NM_177320, intron 3 of 18)	-27200.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	73.22	55.29	46.25	57.35	48.05	61.09	43.3	32.28	29.35
Merged-chr17-56010897-3	chr17	56010393	56011393	+	938.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026530, intron 3 of 12)	intron (NM_026530, intron 3 of 12)	1692.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	5.15	1.38	1.85	4.72	1.4	0.0	1.06	5.75	2.5
Merged-chr11-29318889-2	chr11	29318386	29319386	+	938.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-55286.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	4.0	4.61	3.7	4.72	2.33	3.22	5.28	3.54	3.75
Merged-chr17-83081731-4	chr17	83081171	83082171	+	938.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3446.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	8.58	5.53	10.17	29.69	24.72	14.47	6.34	7.07	8.74
Merged-chr1-9953111-3	chr1	9952613	9953613	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8995.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	5.15	11.06	5.55	8.77	9.8	6.43	6.34	7.07	7.49
Merged-chr17-81669327-3	chr17	81668838	81669838	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69049.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	46.34	54.37	52.72	56.68	57.38	82.79	69.71	56.16	29.35
Merged-chr6-53759785-3	chr6	53759277	53760277	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Eulor8|DNA|TcMar?	61048.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	10.3	11.98	7.4	14.17	21.93	4.82	17.96	26.97	21.23
Merged-chr5-24069127-3	chr5	24068636	24069636	+	938.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31454.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	22.88	7.37	9.25	16.87	7.0	18.49	16.9	11.05	13.74
Merged-chr15-98892343-3	chr15	98891842	98892842	+	938.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007857, exon 3 of 3)	3' UTR (NM_007857, exon 3 of 3)	6198.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	5.72	4.15	6.47	6.07	2.8	6.43	4.22	5.75	0.0
Merged-chr11-3197818-3	chr11	3197404	3198404	+	938.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4441.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	48.05	75.11	96.2	48.58	91.44	130.21	99.28	72.52	162.38
Merged-chr11-87751209-3	chr11	87750700	87751700	+	938.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	151.59	108.28	132.27	116.73	94.7	124.59	101.39	99.49	86.18
Merged-chr15-99817530-3	chr15	99817032	99818032	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	2617.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	80.09	42.85	39.77	53.98	23.79	24.11	114.07	74.73	29.98
Merged-chr13-20292506-3	chr13	20292009	20293009	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-180481.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	10.3	16.13	11.1	5.4	7.93	9.65	19.01	7.52	5.0
Merged-chr10-77279045-3	chr10	77278533	77279533	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19733.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	5.15	1.84	4.62	15.52	3.73	1.61	3.17	5.31	11.24
Merged-chr2-165285815-3	chr2	165285316	165286316	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	1971.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	70.93	48.84	12.02	78.94	64.84	25.72	43.3	45.1	21.23
Merged-chr18-41949366-3	chr18	41948863	41949863	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029942, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1831.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	6.29	7.37	9.25	10.12	11.2	17.68	4.22	5.31	6.25
Merged-chr10-67311645-3	chr10	67311138	67312138	+	938.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26357.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	21.17	11.52	23.12	24.96	12.6	12.86	24.29	16.36	6.25
Merged-chr17-35255735-2	chr17	35255311	35256311	+	938.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4522.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	66.93	67.74	71.22	84.34	92.37	161.56	6.34	16.36	19.98
Merged-chr10-17215201-3	chr10	17214701	17215701	+	938.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119419.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	34.32	37.32	55.5	24.29	28.46	27.33	47.53	46.43	32.48
Merged-chr5-151322126-3	chr5	151321618	151322618	+	938.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46557.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	14.3	9.68	9.25	7.42	11.2	15.27	15.84	13.27	9.37
Merged-chr9-64341174-3	chr9	64340674	64341674	+	938.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177784)	promoter-TSS (NM_001177784)	83.0	NM_001001295	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	140.15	186.16	184.99	143.04	150.68	135.84	126.74	100.81	81.81
Merged-chr11-46793074-3	chr11	46792583	46793583	+	938.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-17716.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	34.32	50.69	27.75	46.56	39.65	50.64	45.42	34.49	29.35
Merged-chr2-26603946-3	chr2	26603459	26604459	+	938.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026212, intron 1 of 5)	CpG	458.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	38.9	23.5	8.32	43.86	42.92	14.47	15.84	11.94	14.99
Merged-chrX-17637442-1	chrX	17636942	17637942	+	938.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-65117.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	8.58	1.84	11.1	2.02	2.8	1.61	3.17	1.33	1.25
Merged-chr15-74931811-3	chr15	74931308	74932308	+	938.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23243.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	81.8	95.84	58.27	53.3	41.52	65.91	168.99	178.64	113.66
Merged-chr8-69399480-3	chr8	69398953	69399953	+	938.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3909.0	NR_038043	378466.0	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|Gm10311	predicted gene 10033	ncRNA	44.62	48.84	51.8	93.79	97.5	88.42	52.81	42.45	36.22
Merged-chr12-101958863-3	chr12	101958370	101959370	+	938.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167914)	promoter-TSS (NM_001167914)	-627.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	143.01	150.68	74.0	101.21	132.95	106.9	140.47	177.31	91.18
Merged-chr17-63422839-3	chr17	63422345	63423345	+	938.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	77735.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	20.02	17.51	18.5	22.94	18.19	19.29	24.29	18.13	11.24
Merged-chr16-17201215-5	chr16	17200624	17201624	+	938.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009456, intron 1 of 3)	CpG	368.0	NM_009456	22195.0	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	320.35	376.0	249.74	346.8	438.52	290.97	336.92	269.28	192.35
Merged-chr8-47948427-3	chr8	47947894	47948894	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42157.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	15.45	29.03	17.57	17.54	14.93	39.39	24.29	31.39	16.24
Merged-chr8-117295027-3	chr8	117294529	117295529	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	38010.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	34.9	26.73	22.2	24.96	22.86	29.74	17.96	20.78	20.61
Merged-chr5-65717577-3	chr5	65717092	65718092	+	938.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19736.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	27.46	28.57	9.25	42.51	28.46	48.23	63.37	72.96	37.47
Merged-chrX-12714008-3	chrX	12713510	12714510	+	938.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048208, intron 15 of 30)	intron (NM_001048208, intron 15 of 30)	-40371.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	18.88	21.66	10.17	22.27	21.93	24.92	21.12	23.88	18.74
Merged-chr7-116531450-3	chr7	116530962	116531962	+	938.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 11 of 14)	intron (NM_001360375, intron 11 of 14)	27093.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	9.15	6.91	3.7	6.75	3.27	6.43	4.22	6.19	3.75
Merged-chr7-102028167-3	chr7	102027682	102028682	+	938.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 6 of 8)	intron (NM_029211, intron 6 of 8)	-10027.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	31.46	27.65	22.2	36.43	29.39	38.58	38.02	49.08	24.98
Merged-chr7-127406666-5	chr7	127406078	127407078	+	938.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167832, exon 1 of 3)	exon (NM_001167832, exon 1 of 3)	244.0	NM_146203	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	61.21	52.99	57.35	64.77	70.44	99.67	60.2	70.75	41.84
Merged-chr9-35177983-2	chr9	35177489	35178489	+	938.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2002.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	81.23	83.86	84.17	89.74	66.71	84.4	39.08	34.49	16.24
Merged-chr9-10566017-3	chr9	10565524	10566524	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 2 of 20)	intron (NM_001033359, intron 2 of 20)	338702.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	1.14	6.91	0.0	6.07	6.53	13.66	6.34	15.92	3.75
Merged-chr19-12818657-3	chr19	12818156	12819156	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	L1MA9|LINE|L1	20077.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	24.03	55.29	32.37	37.11	39.65	25.72	38.02	41.12	24.98
Merged-chr9-111495858-1	chr9	111495358	111496358	+	938.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	56777.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	1.14	4.61	0.0	3.37	2.33	1.61	1.06	0.88	5.0
Merged-chr19-53653905-3	chr19	53653416	53654416	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23390.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	6.86	3.23	9.25	10.12	4.67	4.82	10.56	10.61	11.24
Merged-chr14-20824892-5	chr14	20824447	20825447	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-11715.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	224.82	234.54	103.59	207.14	156.75	86.01	250.32	282.54	108.67
Merged-chr2-148406514-1	chr2	148406014	148407014	+	938.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	1674.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	7.44	3.69	3.7	6.75	6.53	22.51	5.28	6.19	5.0
Merged-chr1-43589184-3	chr1	43588678	43589678	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141424.0	NM_024283	78896.0	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	18.88	5.53	1.85	19.57	7.93	12.06	12.67	10.17	7.49
Merged-chr10-128338652-3	chr10	128338181	128339181	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	954.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	65.21	50.69	45.32	49.25	37.79	27.33	55.98	53.5	42.47
Merged-chrX-10857289-3	chrX	10856789	10857789	+	938.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139924.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	23.45	32.25	12.95	22.94	27.99	16.88	20.07	25.2	26.85
Merged-chr18-67324517-3	chr18	67324019	67325019	+	938.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033214, exon 2 of 4)	non-coding (NR_033214, exon 2 of 4)	-19045.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	2.29	3.23	5.55	3.37	3.27	9.65	4.22	4.86	3.75
Merged-chr5-24814172-3	chr5	24813668	24814668	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053075, intron 2 of 7)	intron (NM_053075, intron 2 of 7)	28193.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	19.45	20.27	14.8	21.59	7.93	22.51	20.07	22.55	19.98
Merged-chr3-8098906-3	chr3	8098398	8099398	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-144011.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	13.16	15.21	20.35	10.8	12.6	16.88	10.56	11.5	6.25
Merged-chr9-57831534-3	chr9	57831007	57832007	+	938.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	2727.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	11.44	2.3	2.77	5.4	2.33	3.22	5.28	3.98	4.37
Merged-chr5-129586209-3	chr5	129585711	129586711	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	2042.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	1.72	0.46	0.0	2.7	1.87	0.0	4.22	1.33	1.25
Merged-chr2-21091201-3	chr2	21090694	21091694	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114171.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.58	4.61	1.85	4.05	0.93	7.23	6.34	3.98	3.75
Merged-chr1-16651291-3	chr1	16650786	16651786	+	938.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310470, intron 1 of 4)	intron (NM_001310470, intron 1 of 4)	5579.0	NM_026456	67923.0	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	61.78	50.23	49.95	43.18	51.32	49.83	53.87	66.77	45.59
Merged-chrX-21630765-3	chrX	21630255	21631255	+	938.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-84145.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	20.59	25.8	23.12	22.27	15.39	20.9	10.56	15.03	6.25
Merged-chr9-98330362-1	chr9	98329862	98330862	+	938.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	33792.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	26.89	35.48	16.65	64.77	62.51	38.58	30.63	32.28	17.49
Merged-chr13-35749366-3	chr13	35748846	35749846	+	938.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	Lx9|LINE|L1	7944.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	19.45	10.14	6.47	9.45	3.73	12.86	11.62	14.59	14.36
Merged-chr19-16140287-3	chr19	16139782	16140782	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7451.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	361.54	392.13	169.27	300.25	309.76	204.97	292.56	306.86	176.74
Merged-chrX-163297354-3	chrX	163296839	163297839	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	LTR33C|LTR|ERVL	55225.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	7.44	6.91	5.55	9.45	2.8	3.22	8.45	7.07	5.62
Merged-chr17-87530593-3	chr17	87530102	87531102	+	938.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83667.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	9.72	4.61	10.17	4.05	3.73	8.04	12.67	7.07	3.75
Merged-chr6-61180250-2	chr6	61179748	61180748	+	938.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164316)	promoter-TSS (NM_001164316)	-77.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	2.86	4.15	5.55	2.02	0.0	0.0	0.0	0.88	1.25
Merged-chr6-71446417-5	chr6	71445925	71446925	+	938.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5788.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	96.11	78.33	65.67	101.21	69.51	64.3	88.72	80.03	56.21
Merged-chr19-16029537-5	chr19	16029060	16030060	+	938.1749880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44485.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	101.83	156.21	76.77	104.58	109.63	79.58	144.7	153.43	97.43
Merged-chr2-132601998-2	chr2	132601506	132602506	+	938.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3810.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	79.52	77.41	54.57	69.5	57.38	65.91	74.99	61.9	51.84
Merged-chr10-94355241-3	chr10	94354737	94355737	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	43288.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	108.12	78.33	68.45	117.4	69.51	51.44	132.02	118.94	57.46
Merged-chr15-59456763-3	chr15	59456251	59457251	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	82553.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	48.62	115.2	57.35	90.41	84.44	99.67	83.44	103.91	80.56
Merged-chr17-32143364-3	chr17	32142855	32143855	+	938.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008716, exon 24 of 33)	exon (NM_008716, exon 24 of 33)	23497.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	1.72	2.76	3.7	2.02	2.33	0.0	1.06	0.44	2.5
Merged-chr14-55730315-2	chr14	55729798	55730798	+	938.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8035.0	NM_001360387	56187.0	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	6.86	11.52	8.32	11.47	9.8	6.43	9.51	7.52	14.99
Merged-chr2-45280530-3	chr2	45280025	45281025	+	938.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163083.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	83.52	85.25	53.65	77.59	84.44	69.93	95.06	68.98	40.59
Merged-chr7-79936687-3	chr7	79936203	79937203	+	938.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	30.89	21.2	7.4	37.78	17.26	3.22	38.02	11.05	3.75
Merged-chr6-136946437-3	chr6	136945942	136946942	+	938.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4543.0	NM_001301309	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	5.72	2.76	1.85	15.52	1.4	8.84	4.22	3.1	0.0
Merged-chr11-5740759-2	chr11	5740254	5741254	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	CpG	422.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	163.04	129.02	134.12	115.38	98.43	101.28	188.0	137.51	115.54
Merged-chr3-145743224-1	chr3	145742724	145743724	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15468.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	1.72	4.61	3.7	3.37	2.8	6.43	4.22	5.31	9.99
Merged-chr8-13889786-1	chr8	13889286	13890286	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	485.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	88.67	44.24	30.52	89.74	86.77	59.48	72.88	43.77	29.35
Merged-chr19-37443061-3	chr19	37442545	37443545	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8204.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	14.3	16.59	13.87	6.07	7.46	8.84	8.45	9.73	7.49
Merged-chr6-108532958-3	chr6	108532459	108533459	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	43216.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	98.97	78.33	51.8	107.95	70.44	57.87	70.76	80.47	25.61
Merged-chr11-103132207-3	chr11	103131706	103132706	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1133.0	NM_001130516	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	300.9	421.62	301.53	333.99	386.74	290.17	327.42	333.39	237.95
Merged-chr19-6298488-1	chr19	6297988	6298988	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010119, exon 5 of 5)	exon (NM_010119, exon 5 of 5)	-7969.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	255.14	268.18	228.46	249.65	197.33	220.24	235.53	331.63	203.6
Merged-chr3-67554000-1	chr3	67553500	67554500	+	938.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28768.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	4.58	10.14	9.25	6.75	3.73	1.61	21.12	40.24	14.99
Merged-chr4-71338830-2	chr4	71338334	71339334	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-803906.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	5.72	8.29	3.7	0.67	3.27	8.04	9.51	4.86	8.74
Merged-chr13-111778730-3	chr13	111778205	111779205	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	30288.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	22.31	20.74	37.0	13.49	9.33	9.65	17.96	10.61	13.74
Merged-chr1-131025993-3	chr1	131025473	131026473	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6128.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	10.3	3.69	0.0	16.19	4.67	2.41	8.45	3.98	4.37
Merged-chr3-69674379-3	chr3	69673896	69674896	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-47659.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	26.31	26.26	17.57	31.04	14.0	30.54	46.47	43.77	26.23
Merged-chr17-51785085-3	chr17	51784581	51785581	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	26973.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	41.19	25.8	24.05	18.89	13.06	4.82	27.46	16.36	11.24
Merged-chrX-93862675-1	chrX	93862175	93863175	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30580.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	4.58	11.52	9.25	8.1	8.4	8.04	5.28	3.1	11.24
Merged-chr11-77686644-3	chr11	77686158	77687158	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	GC_rich|Low_complexity|Low_complexity	519.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	159.6	173.25	166.49	145.06	124.56	177.64	167.93	154.32	126.15
Merged-chr6-120077188-1	chr6	120076688	120077688	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-16192.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	16.02	9.22	11.1	16.87	7.0	8.84	11.62	9.29	1.25
Merged-chr17-8284488-2	chr17	8283991	8284991	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018819, intron 1 of 3)	CpG	678.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	77.23	67.74	31.45	92.44	72.31	67.52	101.39	79.15	28.73
Merged-chr18-46152594-3	chr18	46152076	46153076	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46242.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	12.01	6.45	1.85	8.1	5.13	4.82	14.79	6.63	8.12
Merged-chr13-93939682-1	chr13	93939182	93940182	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 7 of 7)	intron (NM_009712, intron 7 of 7)	-118114.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.0	2.3	5.55	6.75	2.33	0.0	5.28	4.42	5.0
Merged-chr5-137510284-3	chr5	137509787	137510787	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	-7858.0	NM_028753	74097.0	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	93.24	44.7	51.8	108.63	41.05	73.95	80.27	29.63	32.48
Merged-chr19-46645740-1	chr19	46645240	46646240	+	938.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 2 of 3)	intron (NM_001177813, intron 2 of 3)	22339.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	24.6	18.43	24.97	14.17	8.4	11.25	17.96	16.8	8.74
Merged-chr17-35047270-3	chr17	35046773	35047773	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146215)	promoter-TSS (NM_001146215)	-528.0	NM_001146215	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	55.49	76.49	51.8	57.35	40.12	51.44	71.82	61.9	74.94
Merged-chr1-185279351-1	chr1	185278851	185279851	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 31 of 34)	intron (NM_001163754, intron 31 of 34)	-33968.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	4.58	5.99	5.55	17.54	9.8	11.25	2.11	5.31	4.37
Merged-chr8-37788921-2	chr8	37788431	37789431	+	938.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	463271.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.86	2.76	5.55	13.49	7.46	4.02	3.17	0.0	1.87
Merged-chr12-112679405-1	chr12	112678905	112679905	+	938.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001100460, exon 2 of 2)	exon (NM_001100460, exon 2 of 2)	565.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	15.45	8.29	11.1	15.52	11.2	8.04	11.62	3.1	4.37
Merged-chr12-100087513-3	chr12	100087023	100088023	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24808.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	23.45	13.82	19.42	35.09	18.19	30.54	28.52	26.97	13.12
Merged-chr5-21717381-3	chr5	21716849	21717849	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-15727.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	10.87	7.37	16.65	6.75	7.0	17.68	11.62	5.31	8.74
Merged-chr2-163713377-3	chr2	163712881	163713881	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	19344.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	35.47	47.92	49.02	39.81	46.18	52.25	45.42	40.68	38.72
Merged-chr9-94818794-3	chr9	94818293	94819293	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 5 of 15)	intron (NM_177909, intron 5 of 15)	66964.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	10.3	5.99	9.25	10.8	17.26	12.86	7.39	5.31	6.25
Merged-chr6-140614067-3	chr6	140613533	140614533	+	937.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-8630.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.29	8.75	5.55	8.77	7.93	8.04	13.73	11.05	6.87
Merged-chr7-136327347-3	chr7	136326865	136327865	+	937.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	22050.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	14.87	18.43	10.17	21.59	14.0	22.51	27.46	21.67	24.98
Merged-chr17-53690148-2	chr17	53689656	53690656	+	937.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028232)	promoter-TSS (NM_028232)	-841.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	68.07	48.84	63.82	67.47	65.31	56.27	113.01	128.23	74.94
Merged-chr11-80327521-3	chr11	80327016	80328016	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 4 of 8)	intron (NM_139228, intron 4 of 8)	26604.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	17.16	24.42	14.8	22.27	21.46	33.76	27.46	33.16	27.48
Merged-chr2-121452222-3	chr2	121451711	121452711	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110986, exon 3 of 3)	non-coding (NR_110986, exon 3 of 3)	3013.0	NR_110986	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	25.74	27.19	35.15	24.29	11.66	31.35	28.52	24.32	23.73
Merged-chr2-160057675-3	chr2	160057156	160058156	+	937.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41003.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	77.23	46.08	36.07	73.54	34.99	43.4	57.03	47.31	49.34
Merged-chr5-110102086-3	chr5	110101575	110102575	+	937.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281812, intron 4 of 6)	intron (NM_001281812, intron 4 of 6)	1516.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	11.44	9.22	16.65	11.47	10.73	12.86	20.07	6.19	6.25
Merged-chr13-113515270-3	chr13	113514773	113515773	+	937.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12429.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	50.91	51.15	23.12	29.69	19.59	14.47	16.9	9.29	5.62
Merged-chr19-45782769-3	chr19	45782216	45783216	+	937.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023799, intron 1 of 15)	intron (NM_023799, intron 1 of 15)	837.0	NR_151594	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	97.82	77.41	114.69	76.92	90.5	98.87	105.62	102.58	58.71
Merged-chr17-48346442-3	chr17	48345956	48346956	+	937.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272078)	promoter-TSS (NM_001272078)	55.0	NM_001272078	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	30.89	12.44	18.5	48.58	27.99	37.78	31.69	22.11	26.23
Merged-chr8-39641790-3	chr8	39641293	39642293	+	937.822266	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	885.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	114.41	205.05	99.89	172.05	196.87	150.31	217.57	255.13	126.78
Merged-chr8-84800440-3	chr8	84799959	84800959	+	937.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010906)	promoter-TSS (NM_010906)	-121.0	NM_001081982	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	25.74	7.83	13.87	17.54	12.13	11.25	17.96	10.17	16.24
Merged-chr16-5431854-3	chr16	5431337	5432337	+	937.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175881.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	13.16	10.14	9.25	12.14	9.33	16.88	6.34	2.65	3.75
Merged-chr9-111577643-3	chr9	111577144	111578144	+	937.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016853, intron 8 of 10)	intron (NM_016853, intron 8 of 10)	112704.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	6.86	6.91	8.32	4.72	10.26	11.25	5.28	3.54	1.25
Merged-chr9-106789091-3	chr9	106788577	106789577	+	937.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_030730, exon 1 of 22)	5' UTR (NM_030730, exon 1 of 22)	136.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	54.92	42.85	24.05	62.75	35.92	40.19	64.43	40.24	37.47
Merged-chr5-43915426-3	chr5	43914928	43915928	+	937.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	46619.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	14.3	13.36	3.7	17.54	13.06	12.86	10.56	2.65	5.0
Merged-chr9-45486787-3	chr9	45486267	45487267	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-55535.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	9.15	4.15	1.85	14.17	4.67	3.22	92.94	85.78	46.84
Merged-chr5-120502244-3	chr5	120501750	120502750	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	1373.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	24.6	28.57	23.12	41.16	19.13	30.54	59.15	60.58	29.35
Merged-chr14-76174510-3	chr14	76173996	76174996	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63605.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.15	5.07	0.92	10.8	5.13	6.43	6.34	4.86	7.49
Merged-chr7-98357424-3	chr7	98356924	98357924	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	3864.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	50.91	68.66	38.85	85.01	83.04	73.14	97.17	99.49	38.1
Merged-chr17-33920887-3	chr17	33920384	33921384	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025313, intron 3 of 7)	intron (NM_001025313, intron 3 of 7)	1406.0	NM_009318	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	67.5	55.29	55.5	48.58	34.99	49.03	42.25	55.71	44.34
Merged-chr1-7086189-3	chr1	7085685	7086685	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2735.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	14.87	15.21	18.5	9.45	18.19	8.84	9.51	6.19	14.36
Merged-chr10-14053236-3	chr10	14052736	14053736	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	86857.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	16.59	11.98	0.0	14.17	11.66	9.65	14.79	11.05	7.49
Merged-chr18-54989284-3	chr18	54988803	54989803	+	937.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 1 of 8)	intron (NM_001360787, intron 1 of 8)	877.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	31.46	39.17	15.72	42.51	41.52	41.8	26.4	32.28	20.61
Merged-chr11-119943875-2	chr11	119943354	119944354	+	937.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	762.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	65.79	51.61	37.0	72.19	46.65	39.39	46.47	29.18	24.36
Merged-chr7-92700384-2	chr7	92699887	92700887	+	937.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30475.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	5.72	5.99	0.92	6.75	10.26	5.63	21.12	13.71	11.24
Merged-chr16-31803888-2	chr16	31803396	31804396	+	937.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 8 of 22)	intron (NM_001357281, intron 8 of 22)	49546.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	9.15	14.75	7.4	4.72	6.06	12.86	10.56	6.63	6.25
Merged-chr1-185207985-3	chr1	185207476	185208476	+	937.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	MTC|LTR|ERVL-MaLR	3808.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	81.23	109.67	66.6	111.33	139.95	101.28	100.34	119.39	68.7
Merged-chr19-32787567-3	chr19	32787057	32788057	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	MTC|LTR|ERVL-MaLR	29980.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	40.62	58.52	49.95	33.06	25.19	49.03	62.31	34.49	84.31
Merged-chr1-153549709-3	chr1	153549134	153550134	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028749)	promoter-TSS (NM_028749)	80.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	21.17	24.88	9.25	35.76	25.66	22.51	21.12	16.36	6.87
Merged-chr3-21997557-3	chr3	21997037	21998037	+	937.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79115.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	10.3	11.98	12.95	10.8	11.66	5.63	21.12	22.11	12.49
Merged-chr5-20969162-3	chr5	20968662	20969662	+	937.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17340.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	4.58	5.99	1.85	9.45	7.46	12.86	13.73	11.05	5.0
Merged-chr11-59169934-2	chr11	59169442	59170442	+	937.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6197.0	NM_173785	216792.0	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	13.73	7.83	12.95	17.54	3.73	19.29	4.22	1.33	5.0
Merged-chr7-16892205-3	chr7	16891700	16892700	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010320, exon 1 of 4)	5' UTR (NM_010320, exon 1 of 4)	414.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	1.72	1.84	3.7	6.75	4.2	11.25	6.34	1.77	6.87
Merged-chr5-64210943-3	chr5	64210379	64211379	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	RSINE1|SINE|B4	-19478.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	108.69	111.97	99.89	141.69	145.55	145.49	180.61	167.58	101.17
Merged-chr11-75254722-3	chr11	75254230	75255230	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	60737.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	42.9	48.84	29.6	80.29	91.44	79.58	102.45	143.26	84.94
Merged-chr2-84523663-3	chr2	84523167	84524167	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16794.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	133.29	127.18	84.17	112.0	99.83	84.4	148.92	152.55	80.56
Merged-chr13-30987106-3	chr13	30986602	30987602	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13055.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	27.46	41.01	29.6	37.11	37.79	34.56	46.47	38.91	26.85
Merged-chr2-35841727-3	chr2	35841223	35842223	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	22533.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	4.58	6.45	2.77	3.37	2.8	0.0	5.28	2.65	5.0
Merged-chr10-127058390-3	chr10	127057884	127058884	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033262, intron 1 of 3)	intron (NM_001033262, intron 1 of 3)	1800.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	3.43	5.99	1.85	5.4	3.27	4.82	5.28	4.42	5.62
Merged-chr9-13554942-3	chr9	13554392	13555392	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65097.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	17.16	16.13	14.8	14.17	6.53	16.08	16.9	15.92	5.0
Merged-chr18-12731564-3	chr18	12731081	12732081	+	937.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-9774.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	19.45	12.9	9.25	20.92	13.06	22.51	31.69	24.76	21.23
Merged-chr10-16593086-3	chr10	16592605	16593605	+	937.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	502677.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	10.87	6.91	9.25	5.4	5.6	9.65	5.28	8.4	1.25
Merged-chrX-142681247-7	chrX	142680758	142681758	+	937.5238039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199357)	promoter-TSS (NM_001199357)	-142.0	NM_001358727	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	49.2	30.41	48.1	35.76	27.52	28.13	89.78	38.47	32.48
Merged-chr18-54961486-3	chr18	54960979	54961979	+	937.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	28701.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	13.73	7.37	8.32	18.89	11.2	11.25	14.79	8.84	2.5
Merged-chr10-80676044-3	chr10	80675556	80676556	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 1 of 13)	CpG-1308	237.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	75.51	46.54	54.57	66.8	33.12	39.39	50.7	45.1	32.48
Merged-chr10-100160418-3	chr10	100159948	100160948	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144627.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	53.2	67.27	50.87	62.75	72.31	59.48	78.16	98.6	51.21
Merged-chr13-91631596-2	chr13	91631089	91632089	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-109932.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.58	2.76	9.25	12.14	4.67	4.82	2.11	0.44	3.12
Merged-chr5-135196564-3	chr5	135196067	135197067	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011714, exon 2 of 19)	exon (NM_011714, exon 2 of 19)	9244.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	114.98	144.23	87.87	76.24	93.77	69.13	101.39	112.31	59.95
Merged-chr17-31560142-3	chr17	31559662	31560662	+	937.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-4611.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	18.88	18.43	34.22	18.89	17.73	32.15	22.18	17.69	18.11
Merged-chr19-53020279-3	chr19	53019801	53020801	+	937.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133216, intron 3 of 20)	intron (NM_133216, intron 3 of 20)	-9545.0	NR_105834	102465220.0		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	6.29	3.69	8.32	4.05	1.4	4.82	5.28	2.65	9.99
Merged-chrX-13599538-3	chrX	13599040	13600040	+	937.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 10 of 26)	intron (NM_001284503, intron 10 of 26)	-33229.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	26.31	22.12	9.25	20.24	18.66	20.09	21.12	9.73	11.24
Merged-chr19-42146419-3	chr19	42145922	42146922	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-967.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	30.89	40.09	29.6	68.82	20.53	48.23	17.96	23.88	9.37
Merged-chr9-21804508-3	chr9	21803993	21804993	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177030, intron 43 of 49)	intron (NM_177030, intron 43 of 49)	5507.0	NR_106051	102465657.0		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	4.0	1.38	1.85	2.7	1.4	1.61	1.06	1.33	7.49
Merged-chr7-25704877-3	chr7	25704392	25705392	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011577, exon 7 of 7)	exon (NM_011577, exon 7 of 7)	14161.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	84.09	86.17	110.07	58.7	89.57	154.33	95.06	114.96	89.31
Merged-chr3-90245466-3	chr3	90244976	90245976	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_030080	78284.0	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	48.62	57.14	36.07	26.99	32.19	15.27	59.15	59.69	45.59
Merged-chr11-76581398-3	chr11	76580894	76581894	+	937.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3655.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	24.03	23.04	24.05	15.52	14.93	33.76	14.79	19.46	9.99
Merged-chr12-99902673-3	chr12	99902146	99903146	+	937.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 6 of 15)	intron (NM_028354, intron 6 of 15)	18131.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	189.92	199.06	104.52	227.38	233.25	169.6	236.59	290.06	124.91
Merged-chr11-4833181-2	chr11	4832668	4833668	+	937.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252253)	promoter-TSS (NM_001252253)	-33.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	20.02	24.42	14.8	31.71	23.33	16.88	32.74	38.47	32.48
Merged-chr14-70576993-3	chr14	70576543	70577543	+	937.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360475)	promoter-TSS (NM_001360475)	-781.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	163.04	141.46	81.4	188.25	126.89	126.19	130.97	97.28	56.21
Merged-chr6-29360375-3	chr6	29359864	29360864	+	937.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_184053, intron 2 of 6)	intron (NM_184053, intron 2 of 6)	12258.0	NM_007594	12321.0	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	31.46	27.19	11.1	65.45	31.72	13.66	40.14	16.36	6.25
Merged-chr19-14597430-5	chr19	14596867	14597867	+	937.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302951)	promoter-TSS (NM_001302951)	-154.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	274.59	316.56	304.31	254.37	227.19	180.85	301.01	262.65	177.37
Merged-chr13-42096245-3	chr13	42095741	42096741	+	937.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	44220.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	26.89	23.04	37.0	20.24	20.99	28.94	35.91	28.3	16.86
Merged-chr6-88829776-3	chr6	88829271	88830271	+	937.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	12164.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	36.61	38.71	32.37	32.39	15.39	12.86	43.3	44.66	27.48
Merged-chr13-34044146-3	chr13	34043650	34044650	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6509.0	NM_026512	68021.0	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	8.01	7.83	13.87	8.77	8.86	7.23	4.22	2.21	0.62
Merged-chr2-157371906-3	chr2	157371406	157372406	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	intron (NM_026968, intron 1 of 2)	4312.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	68.07	62.67	57.35	72.19	53.65	58.68	80.27	58.37	37.47
Merged-chr13-91461952-3	chr13	91461482	91462482	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	CpG	885.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	26.89	8.75	12.95	19.57	4.67	16.88	5.28	2.21	2.5
Merged-chrX-13311587-3	chrX	13311086	13312086	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30564.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	13.16	8.75	3.7	6.07	5.6	4.82	2.11	5.31	7.49
Merged-chr2-50498543-3	chr2	50498037	50499037	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	143512.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	8.01	9.68	9.25	8.77	7.46	9.65	6.34	5.75	5.0
Merged-chr10-4612855-3	chr10	4612355	4613355	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	866.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	44.62	76.49	38.85	59.38	70.91	42.6	45.42	38.03	16.86
Merged-chr14-77878037-4	chr14	77877490	77878490	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-3073.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	13.16	22.12	10.17	34.41	17.73	27.33	86.61	107.45	74.94
Merged-chr1-64927623-3	chr1	64927124	64928124	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	29200.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	133.86	150.22	104.52	163.28	157.21	137.45	162.65	191.02	110.54
Merged-chr4-116463841-1	chr4	116463341	116464341	+	937.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008641, exon 1 of 29)	exon (NM_008641, exon 1 of 29)	340.0	NM_001042743	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	13.73	9.22	12.95	30.36	8.4	22.51	28.52	4.42	11.24
Merged-chr2-120572322-3	chr2	120571824	120572824	+	937.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	4653.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	74.37	100.45	65.67	92.44	60.18	98.06	95.06	105.68	77.44
Merged-chr10-117330777-3	chr10	117330283	117331283	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37915.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	12.01	8.29	9.25	7.42	7.46	10.45	8.45	3.98	5.62
Merged-chr6-145599375-3	chr6	145598873	145599873	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16590.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	25.74	17.97	15.72	28.34	23.79	25.72	13.73	5.31	16.86
Merged-chr16-57487938-3	chr16	57487426	57488426	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-61316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	32.04	51.61	40.7	36.43	48.98	68.32	23.24	25.2	25.61
Merged-chr19-41982965-3	chr19	41982445	41983445	+	937.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MIR3|SINE|MIR	1182.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	73.22	110.13	61.97	56.0	72.78	68.32	98.23	95.95	49.96
Merged-chr7-118534519-3	chr7	118534019	118535019	+	937.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1163.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	42.9	61.28	47.17	43.86	45.72	29.74	138.36	151.66	50.59
Merged-chr17-73395012-2	chr17	73394522	73395522	+	937.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	4274.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	13.73	29.49	13.87	28.34	20.99	20.9	10.56	18.13	12.49
Merged-chr9-57585163-3	chr9	57584654	57585654	+	937.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 7 of 8)	RSINE1|SINE|B4	-4298.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	20.02	21.66	21.27	25.64	12.6	32.15	16.9	13.71	19.36
Merged-chr6-54248512-3	chr6	54248008	54249008	+	937.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 6 of 12)	L1MB5|LINE|L1	-16350.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	14.87	6.91	0.0	4.05	2.8	5.63	5.28	3.98	5.0
Merged-chr3-36841009-3	chr3	36840506	36841506	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22100.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	5.15	7.83	0.0	12.82	0.93	0.0	6.34	1.77	1.25
Merged-chr11-88197433-2	chr11	88196914	88197914	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291270, intron 1 of 4)	intron (NM_001291270, intron 1 of 4)	3308.0	NM_001291270	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	13.16	18.43	21.27	23.62	10.26	6.43	10.56	2.65	1.25
Merged-chr4-123632341-3	chr4	123631825	123632825	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	15905.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	25.74	29.95	29.6	30.36	24.26	31.35	24.29	30.07	24.98
Merged-chr8-10596501-3	chr8	10595992	10596992	+	937.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 33 of 34)	intron (NM_001319151, intron 33 of 34)	285962.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	9.15	8.75	9.25	8.77	1.87	8.04	10.56	2.65	5.62
Merged-chr10-13299369-3	chr10	13298874	13299874	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	24915.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	70.93	67.27	29.6	58.03	36.85	57.07	78.16	96.39	41.84
Merged-chr7-92653520-3	chr7	92653022	92654022	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 8 of 15)	B1_Mus1|SINE|Alu	-16380.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	27.46	34.1	24.05	33.74	27.52	16.08	32.74	35.37	29.35
Merged-chr11-102040314-3	chr11	102039807	102040807	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1204.0	NM_001160711	52685.0	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	12.01	6.45	11.1	7.42	5.13	4.82	3.17	2.21	1.87
Merged-chr16-11036254-3	chr16	11035723	11036723	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27325.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	6.86	3.23	0.0	2.7	0.93	4.82	2.11	1.77	6.25
Merged-chr6-53710823-3	chr6	53710329	53711329	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109996.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	10.3	5.53	5.55	8.77	5.13	12.86	13.73	15.03	3.75
Merged-chr16-19983107-3	chr16	19982610	19983610	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183390)	promoter-TSS (NM_183390)	-61.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	54.92	67.74	55.5	48.58	55.98	76.36	102.45	105.24	52.46
Merged-chrX-7632701-3	chrX	7632216	7633216	+	937.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019582, exon 44 of 48)	exon (NM_019582, exon 44 of 48)	-5864.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	6.86	10.6	9.25	9.45	5.6	11.25	20.07	17.24	8.12
Merged-chr9-116216898-2	chr9	116216409	116217409	+	937.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	27729.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	13.16	15.21	3.7	19.57	8.86	14.47	9.51	3.1	1.87
Merged-chr12-32292541-2	chr12	32292059	32293059	+	937.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83910.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	179.05	248.36	126.72	203.76	244.92	212.2	247.15	313.05	159.88
Merged-chr4-149780060-3	chr4	149779598	149780598	+	937.127014	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-5831.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	170.47	162.2	135.04	154.51	123.62	122.98	116.18	149.45	83.06
Merged-chr6-118066334-2	chr6	118065839	118066839	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-46.0	NM_027526	70727.0	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.57	2.3	5.55	7.42	1.4	4.82	5.28	0.88	1.25
Merged-chr1-157008250-4	chr1	157007736	157008736	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68610.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	106.97	80.64	64.75	172.05	95.63	66.71	50.7	83.13	52.46
Merged-chr19-24156251-2	chr19	24155756	24156756	+	937.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	-13174.0	NM_001360391	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	6.29	6.91	7.4	5.4	1.87	5.63	3.17	5.31	3.12
Merged-chr17-71215415-3	chr17	71214914	71215914	+	937.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	10760.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	136.72	141.46	92.5	107.95	97.5	129.41	143.64	208.26	69.32
Merged-chr13-94813933-3	chr13	94813453	94814453	+	937.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	25010.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.58	5.07	5.55	12.14	7.46	9.65	7.39	7.96	3.75
Merged-chr3-69633629-3	chr3	69633134	69634134	+	937.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34674.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	129.28	145.61	95.27	133.59	107.76	127.0	119.35	118.06	89.93
Merged-chrX-42148241-3	chrX	42147725	42148725	+	937.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	81.23	99.99	51.8	91.76	52.72	69.13	91.89	106.56	70.57
Merged-chr4-140699830-3	chr4	140699300	140700300	+	937.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	33.75	28.11	32.37	45.88	38.25	24.11	40.14	33.16	15.61
Merged-chr1-191186013-5	chr1	191185543	191186543	+	937.0083619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2710.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	52.06	40.09	27.75	61.4	35.92	26.53	46.47	23.88	17.49
Merged-chr4-72201787-3	chr4	72201281	72202281	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285529)	promoter-TSS (NM_001285529)	537.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	81.23	76.03	40.7	85.69	88.64	73.95	70.76	81.36	31.85
Merged-chr3-97737836-1	chr3	97737336	97738336	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30178.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	24.03	18.89	7.4	30.36	22.86	21.7	16.9	11.5	5.0
Merged-chr5-92436201-2	chr5	92435706	92436706	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-1007.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	56.06	71.42	48.1	71.52	64.38	57.07	90.83	66.77	23.73
Merged-chr6-120114798-1	chr6	120114298	120115298	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	21418.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	16.02	24.42	4.62	61.4	55.51	62.7	19.01	12.82	15.61
Merged-chr13-21710149-3	chr13	21709658	21710658	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5985.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	25.74	37.32	25.9	21.59	26.12	32.15	30.63	32.28	26.23
Merged-chr9-58892394-1	chr9	58891894	58892894	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 23 of 28)	intron (NM_008684, intron 23 of 28)	68882.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	24.03	45.62	42.55	19.57	25.66	16.08	20.07	19.9	23.11
Merged-chr12-102390229-1	chr12	102389729	102390729	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001161365, exon 10 of 10)	3' UTR (NM_001161365, exon 10 of 10)	49584.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.86	5.99	12.95	14.17	3.73	13.66	6.34	4.42	12.49
Merged-chr13-107935124-1	chr13	107934624	107935624	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45060.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	1.14	5.99	5.55	9.45	3.27	4.82	12.67	11.05	9.37
Merged-chr4-133872667-3	chr4	133872178	133873178	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	2053.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	64.07	60.36	55.5	64.1	53.65	86.01	63.37	67.65	67.45
Merged-chr4-32147705-1	chr4	32147205	32148205	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	183598.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	3.43	4.15	7.4	1.35	3.73	6.43	2.11	3.1	3.75
Merged-chr4-34388675-1	chr4	34388175	34389175	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-161940.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	86.38	88.47	52.72	111.33	83.04	77.16	71.82	85.78	45.59
Merged-chr18-67406588-3	chr18	67406093	67407093	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027130, intron 16 of 16)	MIR|SINE|MIR	15862.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	20.59	23.96	20.35	24.96	11.2	17.68	45.42	40.68	24.98
Merged-chr5-4533774-1	chr5	4533274	4534274	+	937.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	224442.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	2.86	0.46	7.4	2.02	2.8	2.41	1.06	5.31	2.5
Merged-chr5-122284790-1	chr5	122284290	122285290	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177242, exon 1 of 6)	exon (NM_177242, exon 1 of 6)	392.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	183.06	108.28	103.59	159.91	92.37	82.79	151.03	102.14	82.44
Merged-chr14-47259134-3	chr14	47258637	47259637	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360532, intron 13 of 24)	B1_Mm|SINE|Alu	17720.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	64.07	74.65	29.6	54.65	53.18	65.11	44.36	47.31	38.1
Merged-chr13-52573267-3	chr13	52572746	52573746	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046069)	promoter-TSS (NR_046069)	-21.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	255.71	172.33	200.71	294.85	141.35	232.29	275.66	216.66	123.66
Merged-chr6-128446244-3	chr6	128445691	128446691	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028593, intron 2 of 4)	RMER10A|LTR|ERVL	7434.0	NR_028593	791299.0	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	-	predicted gene 10069	ncRNA	16.02	8.29	1.85	10.12	13.53	12.86	13.73	7.96	2.5
Merged-chr15-102316416-3	chr15	102315913	102316913	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356312, intron 18 of 30)	intron (NM_001356312, intron 18 of 30)	-9703.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	1.72	5.53	1.85	4.72	1.4	4.82	3.17	6.19	5.0
Merged-chr3-145649921-2	chr3	145649403	145650403	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	82.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	8.58	2.76	1.85	17.54	17.73	24.92	13.73	11.05	11.24
Merged-chr11-70865786-2	chr11	70865288	70866288	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	21027.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	13.16	17.51	7.4	12.82	14.46	23.31	22.18	12.82	9.99
Merged-chr17-34103046-3	chr17	34102562	34103562	+	937.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-7753.0	NR_046183	414076.0	Mm.473092	NR_046183	ENSMUSG00000098197	BC051537	-	cDNA sequence BC051537	ncRNA	140.73	147.45	59.2	27.66	28.46	24.92	96.11	159.62	58.71
Merged-chr9-105764856-1	chr9	105764356	105765356	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 10 of 36)	intron (NM_001102607, intron 10 of 36)	44792.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	2.29	6.45	11.1	20.92	7.93	17.68	0.0	1.33	0.0
Merged-chr2-11530247-1	chr2	11529747	11530747	+	937.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	23682.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	2.86	2.76	11.1	4.05	5.6	6.43	4.22	4.86	3.75
Merged-chr12-110705965-2	chr12	110705468	110706468	+	936.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-9573.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	12.59	8.75	6.47	58.03	23.79	35.37	53.87	22.55	19.98
Merged-chr6-97818306-3	chr6	97817795	97818795	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	11237.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	95.53	82.94	49.95	93.79	62.51	94.04	60.2	67.21	52.46
Merged-chr11-45795853-3	chr11	45795366	45796366	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12217.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	1.72	7.37	1.85	8.77	2.8	3.22	3.17	2.65	5.0
Merged-chr11-119419512-3	chr11	119419012	119420012	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	29040.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	21.17	12.9	32.37	19.57	9.8	12.06	20.07	17.24	11.24
Merged-chr4-66842342-3	chr4	66841848	66842848	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14797.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	40.04	51.61	27.75	55.33	37.79	43.4	24.29	30.07	18.74
Merged-chr9-69702727-3	chr9	69702222	69703222	+	936.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58218.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	6.29	4.15	1.85	1.35	2.33	3.22	2.11	1.33	1.25
Merged-chr11-121434947-3	chr11	121434448	121435448	+	936.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022014)	promoter-TSS (NM_022014)	-5.0	NM_001038699	63828.0	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	8.58	3.69	1.85	3.37	5.6	8.84	6.34	0.88	5.0
Merged-chr13-37312743-3	chr13	37312245	37313245	+	936.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32600.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	13.73	4.15	4.62	9.45	7.0	12.06	6.34	7.96	8.74
Merged-chr17-57344619-3	chr17	57344119	57345119	+	936.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14067.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	129.86	100.45	74.92	95.14	49.45	70.73	89.78	107.89	63.7
Merged-chr11-62251248-3	chr11	62250728	62251728	+	936.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007413, intron 1 of 1)	intron (NM_007413, intron 1 of 1)	2244.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	5.15	2.76	0.0	5.4	3.73	15.27	3.17	3.98	1.25
Merged-chr1-34463026-3	chr1	34462537	34463537	+	936.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 2 of 14)	intron (NM_011206, intron 2 of 14)	3291.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	22.88	16.59	24.05	20.24	10.73	20.09	33.8	18.57	24.98
Merged-chr13-113590377-3	chr13	113589883	113590883	+	936.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28181.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	231.11	180.17	86.95	333.31	227.66	153.52	220.74	272.82	148.64
Merged-chr11-106418833-3	chr11	106418333	106419333	+	936.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023913, exon 10 of 22)	exon (NM_023913, exon 10 of 22)	-36052.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	50.34	41.01	28.67	64.1	34.06	41.8	49.64	52.18	24.36
Merged-chr3-109011025-3	chr3	109010524	109011524	+	936.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	16583.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	14.3	10.14	0.0	11.47	8.4	7.23	4.22	7.52	9.99
Merged-chr3-116858531-3	chr3	116857985	116858985	+	936.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1082.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	69.22	69.12	60.12	88.39	75.11	86.81	83.44	85.34	44.34
Merged-chr2-38944936-1	chr2	38944436	38945436	+	936.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 2 of 7)	intron (NM_172854, intron 2 of 7)	12956.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	4.0	0.92	0.0	4.05	3.27	3.22	1.06	3.98	5.0
Merged-chr18-80478232-3	chr18	80477732	80478732	+	936.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26D_MM|LTR|ERVK	-8565.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	22.88	16.13	14.8	39.13	19.59	30.54	22.18	20.34	23.73
Merged-chr7-120948312-3	chr7	120947819	120948819	+	936.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025298)	TTS (NM_025298)	30575.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	28.03	40.55	33.3	40.48	37.79	49.03	21.12	30.07	16.24
Merged-chr6-97995916-3	chr6	97995410	97996410	+	936.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001178049, intron 4 of 9)	intron (NM_001178049, intron 4 of 9)	4127.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.29	4.15	1.85	11.47	3.73	6.43	10.56	6.19	0.0
Merged-chr7-80402950-3	chr7	80402475	80403475	+	936.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011046)	promoter-TSS (NM_011046)	-163.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	185.92	150.22	147.99	157.88	127.36	160.76	213.35	140.61	110.54
Merged-chr10-18197401-3	chr10	18196869	18197869	+	936.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	13521.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	10.3	14.28	7.4	12.82	16.33	3.22	15.84	8.4	14.36
Merged-chr4-41507091-3	chr4	41506583	41507583	+	936.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253788, intron 4 of 5)	CpG	681.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	2.86	4.61	3.7	4.72	2.33	5.63	3.17	2.65	1.25
Merged-chr3-101601015-3	chr3	101600495	101601495	+	936.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	3712.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	137.29	170.03	114.69	135.62	88.17	101.28	166.88	130.44	96.8
Merged-chr15-25392601-3	chr15	25392118	25393118	+	936.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	L1MC1|LINE|L1	21146.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	42.9	34.56	37.92	41.83	38.72	47.42	51.75	53.06	25.61
Merged-chr2-5811737-4	chr2	5811306	5812306	+	936.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133837, intron 6 of 12)	MTD|LTR|ERVL-MaLR	-33228.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	63.5	36.4	74.92	73.54	52.25	65.91	51.75	47.75	39.97
Merged-chr1-40410060-1	chr1	40409560	40410560	+	936.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-19510.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	1.72	3.23	3.7	8.1	7.0	8.84	2.11	4.86	10.62
Merged-chr8-126573306-3	chr8	126572810	126573810	+	936.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	20126.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	72.08	40.55	22.2	71.52	45.72	41.8	33.8	29.63	29.35
Merged-chr5-35670668-3	chr5	35670172	35671172	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042615, intron 2 of 6)	intron (NM_001042615, intron 2 of 6)	9108.0	NM_001042615	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	4.58	3.23	3.7	2.02	4.67	3.22	8.45	4.42	8.12
Merged-chr17-88517755-3	chr17	88517255	88518255	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-12369.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	11.44	6.45	15.72	14.84	7.0	12.86	12.67	11.94	7.49
Merged-chr14-74949099-3	chr14	74948600	74949600	+	936.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1223.0	NM_001033439	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	23.45	26.26	14.8	28.34	17.73	13.66	22.18	20.34	13.12
Merged-chr11-103027836-3	chr11	103027326	103028326	+	936.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-717.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	311.77	355.26	207.19	280.68	259.85	232.29	366.5	443.94	168.62
Merged-chr17-74808529-3	chr17	74808031	74809031	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	90781.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	13.73	7.37	8.32	7.42	6.06	3.22	40.14	46.43	15.61
Merged-chr13-113611062-3	chr13	113610572	113611572	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	7492.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	62.35	32.72	27.75	24.29	14.0	35.37	25.35	18.57	16.24
Merged-chr15-73620432-2	chr15	73619927	73620927	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	-3103.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	67.5	74.19	61.97	68.15	60.18	104.49	88.72	153.87	38.1
Merged-chr3-28350243-3	chr3	28349742	28350742	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026910, intron 1 of 32)	intron (NM_026910, intron 1 of 32)	-69701.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	17.16	17.05	5.55	5.4	2.8	2.41	17.96	34.93	9.99
Merged-chr2-3703963-3	chr2	3703460	3704460	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9498.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	37.18	32.25	18.5	22.94	14.93	17.68	21.12	16.8	19.98
Merged-chr3-96559579-3	chr3	96559087	96560087	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009935, intron 4 of 7)	intron (NM_001009935, intron 4 of 7)	1630.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	60.07	53.45	25.9	55.33	27.99	47.42	74.99	82.69	38.1
Merged-chr2-140846984-3	chr2	140846489	140847489	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-175513.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.29	2.3	0.92	4.72	0.93	1.61	1.06	1.33	6.87
Merged-chr15-64022508-1	chr15	64022008	64023008	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MIR3|SINE|MIR	-24442.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	37.18	24.88	33.3	38.46	34.99	20.9	11.62	13.71	8.74
Merged-chr17-87083888-3	chr17	87083380	87084380	+	936.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23799.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	70.93	48.84	73.07	54.65	60.65	55.46	72.88	64.56	56.21
Merged-chr12-80061075-1	chr12	80060575	80061575	+	936.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51938.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	9.15	3.23	0.0	16.19	7.0	10.45	10.56	3.98	0.0
Merged-chr1-133130026-3	chr1	133129532	133130532	+	936.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1134.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	310.63	448.34	272.86	306.32	352.21	294.99	320.02	441.28	228.58
Merged-chr12-40430778-3	chr12	40430266	40431266	+	936.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	15024.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	116.7	138.7	108.22	120.1	109.63	76.36	155.26	175.54	59.95
Merged-chr9-110880204-3	chr9	110879710	110880710	+	936.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146228)	promoter-TSS (NM_146228)	36.0	NM_001146059	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	23.45	12.9	14.8	24.96	19.59	13.66	17.96	9.29	3.75
Merged-chr3-55660451-3	chr3	55659952	55660952	+	936.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 49 of 57)	intron (NM_030595, intron 49 of 57)	-122058.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	8.58	6.91	16.65	7.42	8.4	8.04	13.73	5.31	13.12
Merged-chr19-6452407-3	chr19	6451918	6452918	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 5 of 22)	intron (NM_001205234, intron 5 of 22)	33680.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	6.86	3.23	5.55	6.75	0.93	0.0	0.0	1.77	5.0
Merged-chr13-56611315-3	chr13	56610817	56611817	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 1 of 16)	intron (NR_155548, intron 1 of 16)	1731.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	131.57	139.62	62.9	101.21	123.16	84.4	192.23	191.02	75.57
Merged-chr11-6508678-3	chr11	6508183	6509183	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178440, intron 18 of 21)	MTD|LTR|ERVL-MaLR	12275.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	12.59	18.43	19.42	5.4	9.8	14.47	12.67	17.69	16.24
Merged-chr4-148084416-3	chr4	148083904	148084904	+	936.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	3660.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	12.59	17.05	20.35	22.94	12.13	16.08	27.46	25.2	19.36
Merged-chr12-91585463-3	chr12	91584971	91585971	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	4178.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	48.62	38.25	45.32	35.76	28.46	56.27	45.42	29.63	51.21
Merged-chr1-157427130-1	chr1	157426630	157427630	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14535.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	5.15	4.61	1.85	7.42	4.67	9.65	3.17	11.5	3.75
Merged-chr18-37955603-3	chr18	37955103	37956103	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153793)	promoter-TSS (NM_153793)	44.0	NM_153793	225392.0	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	37.18	29.95	20.35	37.11	37.79	36.17	44.36	62.79	45.59
Merged-chr19-43646371-1	chr19	43645871	43646871	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4364.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	6.29	3.69	5.55	7.42	5.13	3.22	2.11	2.21	2.5
Merged-chr11-67564377-3	chr11	67563882	67564882	+	936.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	-22118.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	8.01	5.53	1.85	2.02	3.73	0.0	33.8	15.92	3.75
Merged-chr7-88319170-1	chr7	88318670	88319670	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41085.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	30.32	39.17	49.02	26.99	20.06	37.78	26.4	38.03	26.23
Merged-chr15-34096517-1	chr15	34096017	34097017	+	936.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357925, intron 1 of 10)	PB1D9|SINE|Alu	13798.0	NM_001357925	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	10.87	19.81	10.17	12.14	17.26	14.47	20.07	15.48	20.61
Merged-chrX-56466592-3	chrX	56466105	56467105	+	936.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	intron (NM_172779, intron 2 of 16)	11766.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	17.73	13.82	16.65	16.87	9.8	16.88	6.34	13.71	6.25
Merged-chr10-54074883-6	chr10	54074391	54075391	+	936.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008548, exon 2 of 13)	exon (NM_008548, exon 2 of 13)	905.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	60.64	25.8	34.22	55.33	29.86	16.08	30.63	15.48	10.62
Merged-chr3-153250785-3	chr3	153250280	153251280	+	936.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	47869.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	4.58	2.3	0.0	3.37	0.47	0.8	1.06	0.44	1.25
Merged-chr5-4962177-3	chr5	4961675	4962675	+	936.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-203959.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.0	5.99	0.0	4.05	0.0	0.0	5.28	2.21	6.25
Merged-chr15-38710958-3	chr15	38710456	38711456	+	936.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17560.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	32.04	32.72	16.65	53.3	51.32	69.13	77.1	50.41	24.36
Merged-chr8-57540364-3	chr8	57539870	57540870	+	936.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 6 of 11)	intron (NM_001167981, intron 6 of 11)	28527.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	36.61	33.64	20.35	41.83	28.92	14.47	26.4	27.86	32.48
Merged-chr11-61854473-4	chr11	61853974	61854974	+	936.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 1 of 26)	CpG	618.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	128.71	101.83	128.57	128.87	91.44	171.21	125.69	108.33	100.55
Merged-chr5-62711186-3	chr5	62710680	62711680	+	936.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 7 of 32)	intron (NM_178407, intron 7 of 32)	54997.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	15.45	16.13	20.35	18.89	14.0	8.84	13.73	11.94	13.12
Merged-chr19-3686754-3	chr19	3686238	3687238	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008513)	promoter-TSS (NM_008513)	-174.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	155.6	171.87	200.71	156.53	132.95	204.16	229.19	211.8	123.03
Merged-chr12-80060523-1	chr12	80060023	80061023	+	936.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	52490.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	9.15	4.15	1.85	16.19	6.53	12.86	15.84	7.07	1.25
Merged-chr5-102003618-3	chr5	102003084	102004084	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	66337.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	46.91	35.94	23.12	54.65	34.06	49.83	52.81	38.47	35.6
Merged-chr4-106770938-3	chr4	106770504	106771504	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025590, intron 2 of 15)	intron (NM_025590, intron 2 of 15)	28827.0	NM_025590	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	13.16	19.35	9.25	14.84	10.26	14.47	14.79	17.69	11.87
Merged-chr2-157153428-3	chr2	157152943	157153943	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 19 of 21)	intron (NM_011249, intron 19 of 21)	-18221.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	14.3	20.74	25.9	32.39	27.06	40.19	21.12	14.59	11.24
Merged-chr4-94052917-1	chr4	94052417	94053417	+	936.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	503879.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.57	5.99	1.85	2.02	4.67	0.8	2.11	0.44	1.25
Merged-chr11-32562862-2	chr11	32562364	32563364	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	29598.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	56.63	44.7	38.85	71.52	63.91	50.64	76.05	56.6	20.61
Merged-chr2-129182882-3	chr2	129182398	129183398	+	936.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2225.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	56.06	30.41	29.6	27.66	24.72	37.78	55.98	38.91	24.98
Merged-chr15-35724709-3	chr15	35724226	35725226	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 34 of 61)	intron (NM_177151, intron 34 of 61)	-63679.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	22.88	24.42	22.2	9.45	26.59	20.9	21.12	17.24	24.36
Merged-chr11-55028649-3	chr11	55028149	55029149	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	4822.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	38.33	27.19	4.62	42.51	14.46	9.65	38.02	19.9	13.12
Merged-chr4-89381938-3	chr4	89381450	89382450	+	936.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-70918.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	14.3	17.97	7.4	16.19	12.6	12.86	9.51	10.61	9.99
Merged-chr10-57570492-3	chr10	57570011	57571011	+	936.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-37982.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	9.15	5.99	12.95	20.92	13.06	11.25	6.34	7.52	6.25
Merged-chr11-90220248-3	chr11	90219797	90220797	+	936.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29179.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	13.16	12.9	9.25	20.24	6.53	9.65	11.62	4.42	5.0
Merged-chr17-24413852-3	chr17	24413371	24414371	+	936.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009070)	promoter-TSS (NM_009070)	642.0	NR_033554	654822.0	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	84.66	103.22	71.22	84.34	78.37	118.96	135.19	138.4	82.44
Merged-chr6-140594076-3	chr6	140593576	140594576	+	936.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144920, exon 31 of 31)	3' UTR (NM_144920, exon 31 of 31)	-28587.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	2.86	4.15	0.0	9.45	4.67	5.63	5.28	5.31	2.5
Merged-chr8-24427742-2	chr8	24427241	24428241	+	936.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11205.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	17.16	21.66	12.95	23.62	26.59	24.11	39.08	26.09	9.99
Merged-chr5-113907145-3	chr5	113906647	113907647	+	936.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	MTC|LTR|ERVL-MaLR	1559.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	49.2	73.73	32.37	78.94	73.71	69.93	59.15	66.77	49.34
Merged-chr18-67460993-3	chr18	67460498	67461498	+	936.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3851.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	4.0	0.92	12.02	6.07	3.27	0.0	6.34	6.63	6.87
Merged-chr11-100893618-3	chr11	100893111	100894111	+	936.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 20 of 23)	intron (NM_213660, intron 20 of 23)	33127.0	NM_001164062	20850.0	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	8.01	3.69	3.7	4.05	1.4	1.61	4.22	3.1	5.0
Merged-chr8-14837772-3	chr8	14837262	14838262	+	936.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 13 of 15)	intron (NM_172910, intron 13 of 15)	-50774.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	8.01	8.29	1.85	12.14	16.79	16.88	19.01	14.15	8.74
Merged-chr9-104490836-3	chr9	104490331	104491331	+	936.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64718.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.72	5.99	5.55	7.42	9.8	14.47	10.56	8.4	12.49
Merged-chr17-13659323-3	chr17	13658828	13659828	+	936.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-101213.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	33.75	40.55	38.85	29.69	40.12	44.21	51.75	56.6	40.59
Merged-chr15-31315854-2	chr15	31315359	31316359	+	936.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357922, intron 1 of 2)	intron (NM_001357922, intron 1 of 2)	51900.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.29	0.92	0.92	4.05	2.8	3.22	1.06	1.33	0.0
Merged-chr1-59670180-3	chr1	59669680	59670680	+	936.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009460, intron 1 of 4)	intron (NM_009460, intron 1 of 4)	654.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	347.24	297.67	295.99	264.49	198.73	233.1	288.34	216.22	177.99
Merged-chr11-43632746-3	chr11	43632239	43633239	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31177.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	72.65	65.89	51.8	60.72	44.78	75.56	13.73	17.24	34.35
Merged-chr4-116627985-3	chr4	116627481	116628481	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016777)	promoter-TSS (NM_016777)	-30.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	29.17	31.33	37.0	45.88	29.86	54.66	48.58	61.02	29.98
Merged-chr8-72272615-3	chr8	72272124	72273124	+	936.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32606.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	21.74	14.75	18.5	57.35	14.46	21.7	19.01	6.19	8.74
Merged-chr17-4742507-3	chr17	4741992	4742992	+	936.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	107512.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	4.58	5.99	12.95	6.07	4.2	14.47	21.12	13.27	7.49
Merged-chr11-46035328-1	chr11	46034828	46035828	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-19174.0	NM_001291890	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	2.29	0.92	1.85	1.35	2.33	0.0	8.45	7.07	8.74
Merged-chr6-31170070-1	chr6	31169570	31170570	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	48404.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	140.73	109.67	72.15	98.51	56.45	58.68	130.97	112.31	48.71
Merged-chr16-35803920-1	chr16	35803420	35804420	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152314, intron 3 of 8)	MIR|SINE|MIR	33534.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	1.14	2.76	1.85	3.37	6.06	4.02	4.22	7.52	4.37
Merged-chr5-32996043-1	chr5	32995543	32996543	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22773.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	8.01	9.22	7.4	12.14	10.73	24.92	8.45	5.31	9.99
Merged-chrUn_JH584304-98141-1	chrUn_JH584304	97641	98641	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-38452.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	71.82	46.43	0.0
Merged-chr15-58239297-1	chr15	58238797	58239797	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24405.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	12.01	18.43	12.95	14.84	14.93	24.11	17.96	19.46	10.62
Merged-chr9-64087710-3	chr9	64087215	64088215	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6954.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	25.74	16.59	5.55	24.29	3.73	13.66	16.9	14.15	16.86
Merged-chr17-73973702-3	chr17	73973147	73974147	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23451.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	14.3	27.19	8.32	34.41	43.39	32.15	64.43	55.27	39.35
Merged-chr13-9099502-3	chr13	9099004	9100004	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5623.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	42.9	33.18	35.15	47.23	30.32	19.29	51.75	43.33	28.73
Merged-chr2-92183871-3	chr2	92183384	92184384	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346704)	promoter-TSS (NM_001346704)	-298.0	NM_138755	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	75.51	67.27	93.42	71.52	44.32	77.97	95.06	45.99	63.08
Merged-chr2-57114668-1	chr2	57114168	57115168	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	CpG	370.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	16.02	1.38	1.85	18.22	6.53	6.43	28.52	9.29	6.25
Merged-chr17-35235113-3	chr17	35234606	35235606	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347351)	promoter-TSS (NM_001347351)	96.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	132.14	131.78	147.99	128.2	91.44	141.47	130.97	141.94	145.51
Merged-chr13-59073806-2	chr13	59073321	59074321	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	266124.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	3.43	1.84	1.85	4.72	1.87	8.84	3.17	1.33	5.0
Merged-chr12-112956027-2	chr12	112955546	112956546	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13904.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	4.0	1.84	0.0	2.02	3.27	0.0	3.17	2.21	2.5
Merged-chr14-65375002-2	chr14	65374522	65375522	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	16346.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	10.87	8.75	7.4	10.8	11.2	7.23	4.22	3.1	0.62
Merged-chr9-107986557-3	chr9	107986067	107987067	+	936.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026597)	promoter-TSS (NM_026597)	-651.0	NM_026597	68176.0	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	20.59	16.13	37.0	23.62	14.93	39.39	26.4	24.32	18.74
Merged-chr8-72216060-2	chr8	72215555	72216555	+	936.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3218.0	NM_001080812	234421.0	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	8.58	3.23	1.85	9.45	3.73	12.86	8.45	3.98	3.12
Merged-chr4-101741252-1	chr4	101740752	101741752	+	936.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146146, intron 4 of 18)	RMER15|LTR|ERVL	23845.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	62.35	77.41	33.3	91.76	105.43	94.85	143.64	149.89	88.06
Merged-chr10-26828538-3	chr10	26828026	26829026	+	935.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	56014.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	40.62	27.65	18.5	41.83	28.92	35.37	12.67	15.03	15.61
Merged-chr16-33414414-3	chr16	33413886	33414886	+	935.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	B3A|SINE|B2	13941.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	29.75	21.2	13.87	18.22	14.0	6.43	25.35	32.28	5.62
Merged-chr13-67463953-3	chr13	67463444	67464444	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12320.0	NM_177712	238692.0	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	3.43	1.84	1.85	2.02	2.33	3.22	5.28	5.75	1.25
Merged-chr13-45971292-3	chr13	45970790	45971790	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6299.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	104.11	94.0	36.07	60.72	32.19	27.33	81.33	92.41	24.36
Merged-chr6-31075894-3	chr6	31075383	31076383	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12790.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	14.3	5.99	9.25	18.22	9.8	25.72	22.18	14.59	6.25
Merged-chr3-129879351-3	chr3	129878859	129879859	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104611, intron 1 of 4)	intron (NR_104611, intron 1 of 4)	753.0	NM_023196	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	23.45	11.06	7.4	35.09	14.0	5.63	19.01	14.59	1.25
Merged-chr11-4600134-3	chr11	4599638	4600638	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-5323.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	22.88	14.75	11.1	15.52	16.79	15.27	17.96	11.05	13.74
Merged-chr13-34792155-3	chr13	34791646	34792646	+	935.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52504.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	48.05	19.81	13.87	31.71	25.66	14.47	11.62	15.92	6.87
Merged-chr15-102471725-3	chr15	102471199	102472199	+	935.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174073, intron 1 of 12)	intron (NM_001174073, intron 1 of 12)	1067.0	NM_001174073	18521.0	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	113.27	132.25	61.05	87.04	100.3	62.7	133.08	160.06	85.56
Merged-chr11-54965401-3	chr11	54964909	54965909	+	935.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-2469.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	12.01	20.27	25.9	16.19	14.46	32.96	20.07	11.94	26.23
Merged-chr15-95773679-2	chr15	95773176	95774176	+	935.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-17167.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	2.29	4.15	1.85	6.75	2.8	1.61	5.28	2.65	3.12
Merged-chr16-8736162-3	chr16	8735658	8736658	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	2184.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	21.17	25.8	12.02	15.52	14.93	16.08	12.67	17.24	9.37
Merged-chr1-107399571-3	chr1	107399058	107400058	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23131.0	NM_027548	116872.0	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	11.44	13.82	24.05	18.22	17.26	11.25	26.4	19.9	24.36
Merged-chr7-99107032-3	chr7	99106515	99107515	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	34129.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	46.91	28.57	33.3	41.16	31.26	21.7	62.31	53.5	38.1
Merged-chr16-59617336-3	chr16	59616809	59617809	+	935.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019665, intron 7 of 7)	intron (NM_019665, intron 7 of 7)	-19636.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	2.86	3.69	2.77	12.14	5.13	6.43	1.06	4.42	2.5
Merged-chr10-26827647-3	chr10	26827137	26828137	+	935.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	(T)n|Simple_repeat|Simple_repeat	55125.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	12.01	8.75	5.55	9.45	13.53	8.04	3.17	3.98	14.36
Merged-chr1-171815966-3	chr1	171815466	171816466	+	935.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-23731.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	14.87	19.35	16.65	25.64	16.33	30.54	13.73	8.84	6.25
Merged-chr7-126596074-2	chr7	126595565	126596565	+	935.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1155.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	16.02	9.68	7.4	8.77	4.67	3.22	13.73	4.86	8.74
Merged-chr11-114571337-2	chr11	114570840	114571840	+	935.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97203.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	3.43	1.38	7.4	10.8	8.4	19.29	30.63	30.07	12.49
Merged-chr17-34027355-2	chr17	34026891	34027891	+	935.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008202)	TTS (NM_008202)	664.0	NM_013543	14979.0	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	30.32	19.35	32.37	35.09	14.46	37.78	57.03	40.68	22.48
Merged-chr2-48537080-1	chr2	48536580	48537580	+	935.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-277029.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	3.43	1.84	3.7	8.1	5.13	3.22	2.11	2.65	5.62
Merged-chr1-183266285-3	chr1	183265774	183266774	+	935.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-30786.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	68.07	47.46	32.37	78.94	62.51	63.5	91.89	91.53	60.58
Merged-chr11-63788257-3	chr11	63787766	63788766	+	935.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134018.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	36.04	51.15	33.3	60.05	30.32	52.25	53.87	54.39	42.47
Merged-chr1-151703048-3	chr1	151702543	151703543	+	935.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 9 of 13)	intron (NM_022018, intron 9 of 13)	51684.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	8.01	4.15	12.95	6.75	3.73	8.04	13.73	3.98	7.49
Merged-chr7-27552250-3	chr7	27551742	27552742	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 1 of 13)	intron (NM_001317355, intron 1 of 13)	976.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	31.46	40.09	22.2	29.01	17.73	40.19	35.91	30.07	28.1
Merged-chr11-87466204-3	chr11	87465710	87466710	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	ORR1B1|LTR|ERVL-MaLR	38619.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	12.59	7.83	9.25	16.19	15.39	7.23	20.07	9.73	9.99
Merged-chr5-25663298-3	chr5	25662814	25663814	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42483.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	64.07	47.92	28.67	68.82	62.98	66.71	36.97	34.49	38.1
Merged-chr15-79109617-3	chr15	79109145	79110145	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177461, intron 1 of 15)	CpG	662.0	NM_177461	27008.0	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	146.45	98.61	104.52	201.07	146.02	130.21	87.66	68.98	59.33
Merged-chr8-70755961-3	chr8	70755446	70756446	+	935.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009001, exon 2 of 5)	exon (NM_009001, exon 2 of 5)	1267.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	38.33	28.57	12.95	73.54	41.99	44.21	43.3	25.65	16.24
Merged-chr4-32373357-3	chr4	32372822	32373822	+	935.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44113.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	18.31	5.99	14.8	10.12	11.66	13.66	8.45	5.31	11.24
Merged-chr4-150569336-3	chr4	150568823	150569823	+	935.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	CpG	82851.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	221.38	222.56	158.17	200.39	189.87	192.91	218.63	207.38	133.65
Merged-chr4-123283769-3	chr4	123283157	123284157	+	935.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356377, exon 1 of 14)	exon (NM_001356377, exon 1 of 14)	746.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	50.91	23.5	7.4	55.33	50.85	10.45	68.65	42.89	4.37
Merged-chr19-46524243-4	chr19	46523668	46524668	+	935.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22520.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	297.47	170.03	103.59	338.03	177.27	147.09	200.68	241.87	111.17
Merged-chr19-60467373-3	chr19	60466883	60467883	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201615, exon 1 of 1)	exon (NM_201615, exon 1 of 1)	921.0	NM_201615	226278.0	Mm.377241	NM_201615	ENSMUSG00000045052	Prlhr	Gm339|Gpr10|Gr3|Prrpr	prolactin releasing hormone receptor	protein-coding	4.58	1.38	0.0	3.37	3.73	6.43	8.45	3.1	5.0
Merged-chr5-105616314-2	chr5	105615821	105616821	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-83648.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	148.16	87.09	68.45	120.1	60.18	41.8	78.16	80.47	56.21
Merged-chr16-90726893-1	chr16	90726393	90727393	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025642, intron 1 of 4)	intron (NM_025642, intron 1 of 4)	478.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	54.35	50.69	35.15	82.32	75.57	49.03	74.99	70.3	22.48
Merged-chr13-101097063-2	chr13	101096558	101097558	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135069.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	5.15	2.3	2.77	4.05	2.33	5.63	4.22	4.42	3.12
Merged-chr9-116182330-3	chr9	116181839	116182839	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6841.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	55.49	60.36	34.22	62.07	28.92	67.52	24.29	24.76	24.36
Merged-chr15-90649533-1	chr15	90649033	90650033	+	935.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	29855.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	5.72	3.69	5.55	13.49	5.13	8.84	0.0	3.1	3.75
Merged-chr2-180045526-3	chr2	180045033	180046033	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	3050.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	2.86	3.23	0.0	4.72	0.47	1.61	1.06	6.19	2.5
Merged-chr1-171377324-3	chr1	171376836	171377836	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	intron (NM_001122680, intron 1 of 7)	7163.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	21.74	21.66	26.82	13.49	9.33	4.82	2.11	4.86	7.49
Merged-chr7-130819011-3	chr7	130818533	130819533	+	935.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081038, exon 12 of 16)	exon (NM_001081038, exon 12 of 16)	44964.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	9.15	3.69	8.32	6.07	4.2	4.82	7.39	3.98	6.25
Merged-chr7-19635510-2	chr7	19635013	19636013	+	935.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019649, intron 10 of 13)	intron (NM_019649, intron 10 of 13)	-6075.0	NM_009046	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	10.87	7.37	5.55	13.49	2.33	4.02	10.56	11.05	4.37
Merged-chr11-98813496-2	chr11	98812996	98813996	+	935.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-3407.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	118.42	117.96	125.79	120.77	90.5	76.36	142.59	165.37	89.31
Merged-chr9-60602169-3	chr9	60601672	60602672	+	935.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311095, intron 12 of 15)	intron (NM_001311095, intron 12 of 15)	-56290.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	20.59	27.65	4.62	14.17	11.66	9.65	3.17	7.96	6.87
Merged-chr7-4204007-3	chr7	4203523	4204523	+	935.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33731.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	14.3	20.27	15.72	15.52	14.46	29.74	15.84	17.24	17.49
Merged-chr8-39620521-2	chr8	39620046	39621046	+	935.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 4 of 9)	RMER6A|LTR|ERVK	22132.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	62.35	80.18	38.85	50.6	57.38	60.28	84.49	83.57	68.07
Merged-chr2-91065776-3	chr2	91065294	91066294	+	935.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290765, intron 3 of 9)	intron (NM_001290765, intron 3 of 9)	4521.0	NM_026721	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	16.59	7.83	11.1	8.1	2.33	8.04	3.17	2.21	13.74
Merged-chr3-108444801-3	chr3	108444278	108445278	+	935.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	CpG	481.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	208.23	227.63	137.82	205.11	289.7	177.64	226.02	263.53	86.18
Merged-chr8-26076334-2	chr8	26075846	26076846	+	935.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 6 of 21)	intron (NM_207659, intron 6 of 21)	-6263.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	6.86	6.91	3.7	13.49	9.8	17.68	14.79	14.15	11.24
Merged-chr3-152884176-2	chr3	152883664	152884664	+	935.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	98043.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	13.73	9.22	10.17	7.42	10.26	3.22	4.22	6.63	1.25
Merged-chr5-86960711-3	chr5	86960202	86961202	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34199.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	11.44	10.14	2.77	11.47	10.73	15.27	6.34	5.31	1.25
Merged-chr5-105515509-3	chr5	105514984	105515984	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3987.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	54.35	43.31	11.1	97.16	44.78	21.7	44.36	18.13	6.25
Merged-chr1-170136584-3	chr1	170136087	170137087	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38377.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	8.01	5.99	0.0	18.22	10.73	4.02	9.51	6.63	4.37
Merged-chr7-107668746-3	chr7	107668240	107669240	+	935.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357437, intron 1 of 23)	intron (NM_001357437, intron 1 of 23)	3262.0	NM_001357436	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	16.02	11.06	7.4	8.77	10.73	9.65	5.28	4.86	4.37
Merged-chr4-43875564-3	chr4	43875036	43876036	+	935.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016678)	promoter-TSS (NM_016678)	6.0	NM_016678	53614.0	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	8.58	2.76	1.85	4.05	4.2	6.43	8.45	0.44	1.25
Merged-chr15-96566337-3	chr15	96565824	96566824	+	935.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75638.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	20.02	19.81	22.2	35.76	25.19	22.51	20.07	15.92	31.85
Merged-chr11-69235393-3	chr11	69234891	69235891	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008192, intron 3 of 18)	C-rich|Low_complexity|Low_complexity	1631.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	5.72	1.84	7.4	9.45	1.87	4.82	7.39	1.77	2.5
Merged-chr1-55505160-3	chr1	55504658	55505658	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	Lx8|LINE|L1	99212.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	74.37	53.91	47.17	54.65	51.32	89.22	35.91	36.7	34.97
Merged-chr10-42031248-3	chr10	42030733	42031733	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12851.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	8.01	2.76	1.85	8.77	1.4	4.82	0.0	2.21	3.75
Merged-chr11-3187230-2	chr11	3186725	3187725	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 3 of 32)	intron (NM_030207, intron 3 of 32)	6238.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	42.33	86.17	135.04	62.07	91.44	95.65	68.65	67.65	138.65
Merged-chr12-41238334-3	chr12	41237835	41238835	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	214245.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	24.6	24.88	31.45	24.29	32.66	28.94	24.29	26.97	28.73
Merged-chr16-20622527-3	chr16	20622021	20623021	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177940, intron 2 of 18)	intron (NM_177940, intron 2 of 18)	-1243.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	8.58	3.23	1.85	16.19	11.66	10.45	30.63	26.53	4.37
Merged-chr18-21300310-3	chr18	21299800	21300800	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033445)	promoter-TSS (NM_001033445)	-161.0	NM_001033445	381126.0	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	1.14	0.92	5.55	8.77	4.2	6.43	2.11	0.44	1.25
Merged-chr8-34149725-2	chr8	34149285	34150285	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-3046.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	36.04	44.7	36.07	45.88	55.51	48.23	49.64	68.98	53.71
Merged-chr3-22091949-3	chr3	22091452	22092452	+	935.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	RLTR23|LTR|ERV1	15300.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	26.31	29.03	31.45	24.29	15.39	10.45	20.07	19.9	13.74
Merged-chr13-6228505-1	chr13	6228005	6229005	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-319652.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	1.72	3.23	0.0	3.37	0.47	3.22	0.0	4.86	5.0
Merged-chr14-93654054-1	chr14	93653554	93654554	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	LTR50|LTR|ERVL	236615.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.86	3.69	1.85	10.12	7.46	5.63	1.06	3.54	2.5
Merged-chr12-73773103-2	chr12	73772607	73773607	+	935.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-128217.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	2.29	10.14	3.7	6.75	4.2	3.22	4.22	0.88	3.75
Merged-chr5-143424076-3	chr5	143423578	143424578	+	935.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20258.0	NM_025841	66913.0	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	5.72	5.07	2.77	10.12	4.67	8.84	8.45	1.33	5.62
Merged-chr18-39737433-3	chr18	39736948	39737948	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36049.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	17.16	18.43	18.5	20.24	20.06	14.47	21.12	22.11	24.98
Merged-chr13-46735974-3	chr13	46735466	46736466	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8117.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	179.05	313.33	168.34	223.33	266.84	210.59	191.17	262.65	136.15
Merged-chr4-53441310-3	chr4	53440816	53441816	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 1 of 15)	intron (NM_133891, intron 1 of 15)	903.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	45.76	29.03	21.27	43.86	17.26	33.76	19.01	15.48	13.74
Merged-chr10-59225325-3	chr10	59224824	59225824	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172939, exon 1 of 1)	3' UTR (NM_172939, exon 1 of 1)	3402.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	14.87	19.81	11.1	15.52	16.79	24.11	40.14	34.93	22.48
Merged-chr9-55110646-3	chr9	55110135	55111135	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38734.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	2.29	4.15	0.0	2.02	2.8	3.22	1.06	0.44	3.75
Merged-chr3-79120193-3	chr3	79119702	79120702	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	24685.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	76.66	64.97	48.1	25.64	16.33	29.74	45.42	34.93	9.99
Merged-chr7-88278942-3	chr7	88278444	88279444	+	935.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	859.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	184.2	270.02	181.29	207.81	223.46	177.64	312.63	371.42	175.49
Merged-chr7-101412947-3	chr7	101412409	101413409	+	935.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027180)	TTS (NM_027180)	-8782.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	13.16	3.23	19.42	12.82	4.67	4.82	6.34	5.31	12.49
Merged-chr3-144716068-3	chr3	144715544	144716544	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	4291.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	73.22	79.25	31.45	69.5	65.78	57.87	130.97	98.16	69.95
Merged-chr8-11008096-4	chr8	11007632	11008632	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	282.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	66.36	54.83	24.97	86.36	60.65	36.17	38.02	16.36	22.48
Merged-chr14-27388557-3	chr14	27388062	27389062	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 7 of 10)	intron (NM_027871, intron 7 of 10)	27173.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	34.9	37.78	24.05	35.09	32.19	34.56	48.58	42.45	41.84
Merged-chr5-135012884-3	chr5	135012378	135013378	+	935.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190437)	TTS (NM_001190437)	279.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	29.75	29.95	29.6	50.6	27.06	45.01	72.88	71.63	43.09
Merged-chr1-151343728-3	chr1	151343263	151344263	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359262)	promoter-TSS (NM_001359262)	-723.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	177.91	205.97	154.47	238.18	219.26	190.5	272.5	340.47	128.65
Merged-chr2-35271966-3	chr2	35271479	35272479	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206367, intron 2 of 17)	intron (NM_001206367, intron 2 of 17)	5235.0	NM_001206369	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	12.59	2.3	3.7	8.77	0.0	4.82	2.11	3.1	7.49
Merged-chr3-79002665-3	chr3	79002162	79003162	+	935.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142225.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	22.31	22.58	23.12	25.64	29.86	23.31	10.56	7.52	7.49
Merged-chr10-67200458-3	chr10	67199949	67200949	+	935.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	L1MB3|LINE|L1	14699.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	58.92	53.91	30.52	46.56	33.12	42.6	52.81	50.41	43.09
Merged-chr15-59612015-3	chr15	59611505	59612505	+	935.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36649.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	22.31	18.43	12.95	6.75	4.2	11.25	10.56	18.57	8.74
Merged-chrX-12081302-3	chrX	12080807	12081807	+	935.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175046)	promoter-TSS (NM_175046)	-754.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	25.74	18.43	15.72	24.29	19.13	16.88	36.97	21.22	18.74
Merged-chr15-100175167-3	chr15	100174682	100175682	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 13 of 32)	intron (NM_172819, intron 13 of 32)	12854.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	13.73	23.04	22.2	21.59	28.92	31.35	21.12	25.65	17.49
Merged-chr19-12462466-8	chr19	12461947	12462947	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010821, exon 2 of 2)	exon (NM_010821, exon 2 of 2)	1668.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	365.54	495.34	202.56	355.58	378.34	311.87	315.8	436.42	231.08
Merged-chr11-51911681-3	chr11	51911141	51912141	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-54011.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	30.32	24.42	25.9	57.35	34.99	45.82	35.91	42.89	36.85
Merged-chr8-104370599-3	chr8	104370136	104371136	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	25171.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	80.09	102.75	70.3	66.12	48.98	69.13	62.31	95.51	61.2
Merged-chr17-26505473-3	chr17	26504904	26505904	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013642)	TTS (NM_013642)	3068.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	185.35	234.54	102.67	161.26	155.35	94.85	123.57	129.11	133.65
Merged-chr7-127471843-3	chr7	127471322	127472322	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145589, exon 1 of 11)	5' UTR (NM_145589, exon 1 of 11)	208.0	NM_145589	233895.0	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	212.23	187.08	185.92	155.86	116.16	174.42	149.98	181.29	154.88
Merged-chr7-88482198-1	chr7	88481698	88482698	+	935.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028238, intron 2 of 2)	intron (NM_028238, intron 2 of 2)	51925.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	8.58	9.68	8.32	14.17	12.6	19.29	11.62	7.96	3.12
Merged-chr2-68438108-3	chr2	68437618	68438618	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	Lx8b|LINE|L1	33863.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	13.73	9.22	15.72	12.82	7.46	27.33	26.4	19.46	11.87
Merged-chr8-124924480-1	chr8	124923980	124924980	+	935.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	MIRc|SINE|MIR	24774.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	2.86	9.22	1.85	9.45	9.33	8.04	4.22	1.33	1.25
Merged-chrX-139485129-3	chrX	139484606	139485606	+	935.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175326, intron 1 of 13)	Lx5c|LINE|L1	4739.0	NM_001346522	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	5.72	2.76	0.0	2.7	0.93	1.61	4.22	2.65	2.5
Merged-chr11-44504317-3	chr11	44503848	44504848	+	935.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14616.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	10.3	12.44	12.95	19.57	7.46	3.22	19.01	12.38	5.0
Merged-chr11-58307734-3	chr11	58307200	58308200	+	935.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_182996, exon 2 of 12)	exon (NM_182996, exon 2 of 12)	631.0	NM_001040686	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	17.16	12.44	19.42	15.52	20.53	20.09	23.24	10.17	14.36
Merged-chr10-121506810-3	chr10	121506306	121507306	+	935.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30556.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	33.75	26.26	29.6	67.47	47.58	45.01	52.81	42.89	18.11
Merged-chr5-137831298-3	chr5	137830820	137831820	+	935.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153510, exon 3 of 7)	exon (NM_153510, exon 3 of 7)	4958.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	80.09	62.21	76.77	58.7	43.85	75.56	60.2	63.23	59.33
Merged-chr19-53325760-3	chr19	53325250	53326250	+	935.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	-3663.0	NM_010847	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	62.35	43.31	9.25	72.19	56.91	40.19	50.7	21.67	21.86
Merged-chr13-80960714-2	chr13	80960201	80961201	+	935.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3373.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	8.58	7.37	3.7	16.19	14.93	28.13	7.39	18.13	12.49
Merged-chr19-57622017-3	chr19	57621523	57622523	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181415, intron 1 of 28)	L1ME1|LINE|L1	10989.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	12.01	15.67	3.7	10.12	14.46	11.25	6.34	5.31	9.99
Merged-chr8-115600044-3	chr8	115599529	115600529	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106865.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	37.18	44.24	26.82	41.16	49.45	70.73	29.57	33.6	39.35
Merged-chr11-115814092-3	chr11	115813598	115814598	+	935.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080643)	promoter-TSS (NM_080643)	-506.0	NM_080643	140721.0	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	2.29	5.07	1.85	5.4	5.13	5.63	9.51	3.54	3.12
Merged-chr11-117320152-3	chr11	117319659	117320659	+	935.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11556.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	76.08	61.28	93.42	75.57	42.45	57.87	61.26	40.24	27.48
Merged-chr19-8997757-1	chr19	8997257	8998257	+	935.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	8473.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	4.0	3.23	1.85	6.75	7.46	12.06	5.28	1.33	0.0
Merged-chr6-84590464-3	chr6	84589972	84590972	+	935.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175475, intron 1 of 6)	intron (NM_175475, intron 1 of 6)	3338.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.86	2.76	0.0	3.37	0.0	6.43	2.11	2.65	1.25
Merged-chr2-155534241-1	chr2	155533741	155534741	+	935.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	intron (NM_019811, intron 2 of 17)	16198.0	NM_019811	60525.0	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	4.58	2.76	2.77	58.03	69.04	52.25	5.28	1.77	3.75
Merged-chr18-65524707-3	chr18	65524206	65525206	+	935.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55524.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	21.17	13.82	13.87	14.17	15.86	24.11	30.63	15.92	9.37
Merged-chr4-59239421-3	chr4	59238922	59239922	+	935.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20629.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	105.26	86.17	66.6	95.14	97.5	95.65	110.9	98.6	58.08
Merged-chr9-45245595-3	chr9	45245052	45246052	+	935.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 4 of 4)	intron (NM_001198971, intron 4 of 4)	21155.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	315.2	353.88	283.04	279.33	247.72	217.83	295.73	402.81	205.47
Merged-chr4-45795842-3	chr4	45795339	45796339	+	935.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3183.0	NM_028270	72535.0	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	26.89	26.73	33.3	25.64	15.39	23.31	64.43	38.03	37.47
Merged-chr8-73354368-3	chr8	73353931	73354931	+	935.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010687)	promoter-TSS (NM_010687)	-891.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	27.46	29.03	30.52	17.54	33.59	36.17	32.74	21.22	17.49
Merged-chr2-119996101-3	chr2	119995583	119996583	+	935.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355293, intron 1 of 30)	intron (NM_001355293, intron 1 of 30)	-21434.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	22.31	21.2	30.52	20.24	12.6	27.33	16.9	11.94	18.11
Merged-chr10-78471114-2	chr10	78470593	78471593	+	935.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6145.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	27.46	8.29	16.65	31.04	27.06	21.7	11.62	11.94	7.49
Merged-chr11-25849021-2	chr11	25848535	25849535	+	935.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-353205.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.86	4.15	4.62	14.84	9.8	8.84	7.39	6.19	7.49
Merged-chr19-3899149-3	chr19	3898648	3899648	+	935.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136091, intron 10 of 19)	intron (NM_001136091, intron 10 of 19)	6082.0	NM_016921	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	22.31	23.96	30.52	14.84	11.2	14.47	21.12	20.34	21.23
Merged-chr7-82811755-3	chr7	82811258	82812258	+	935.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-55575.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	50.91	32.25	33.3	22.27	18.19	13.66	69.71	55.27	24.98
Merged-chr4-129058680-3	chr4	129058205	129059205	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029219, exon 1 of 9)	exon (NM_029219, exon 1 of 9)	434.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	229.97	178.78	168.34	237.5	112.9	139.06	222.86	163.6	80.56
Merged-chr13-60358884-3	chr13	60358377	60359377	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153406.0	NR_036449	100503759.0	Mm.38101	NM_177810	ENSMUSG00000050765	Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	13.16	16.59	25.9	24.29	18.66	35.37	25.35	21.67	13.74
Merged-chr6-124380376-3	chr6	124379870	124380870	+	935.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-15884.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	33.18	23.96	22.2	37.78	17.73	17.68	29.57	25.65	23.73
Merged-chr5-23435409-4	chr5	23434846	23435846	+	935.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040469)	promoter-TSS (NR_040469)	917.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	193.35	288.45	215.51	190.27	244.92	215.42	222.86	317.92	231.08
Merged-chr14-75130476-3	chr14	75130001	75131001	+	935.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001247984)	promoter-TSS (NM_001247984)	382.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	96.11	86.63	66.6	97.83	79.31	87.61	128.85	145.03	58.08
Merged-chr2-75725105-3	chr2	75724611	75725611	+	935.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20448.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	36.04	28.57	24.97	36.43	26.12	45.01	45.42	51.29	32.48
Merged-chr8-125729937-3	chr8	125729440	125730440	+	935.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-4263.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	37.18	42.85	40.7	41.16	32.19	52.25	58.09	45.54	51.21
Merged-chr6-31219104-2	chr6	31218593	31219593	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110471)	promoter-TSS (NR_110471)	-619.0	NR_110470	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	190.49	246.52	147.99	209.84	234.65	176.83	158.43	239.65	138.65
Merged-chr18-46198259-1	chr18	46197759	46198759	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178872, intron 1 of 9)	CpG	559.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	41.76	23.5	25.9	31.04	27.52	32.96	46.47	46.87	44.97
Merged-chr11-26128610-2	chr11	26128109	26129109	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-73631.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.86	10.14	7.4	18.89	21.93	17.68	5.28	9.73	11.24
Merged-chr17-27969503-1	chr17	27969003	27970003	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60197.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	25.74	13.36	15.72	26.99	13.53	12.86	12.67	8.4	8.12
Merged-chr13-23760831-1	chr13	23760331	23761331	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_178192)	TTS (NM_178192)	418.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	252.28	166.34	147.07	213.21	141.35	160.76	172.16	213.57	179.86
Merged-chr9-83537658-2	chr9	83537157	83538157	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10681.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	32.61	42.85	37.0	53.3	59.25	52.25	34.85	37.14	43.72
Merged-chr2-33370970-1	chr2	33370470	33371470	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	524.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	6.29	16.59	34.22	17.54	14.0	12.06	23.24	13.71	11.87
Merged-chr18-46859691-2	chr18	46859186	46860186	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029008, intron 1 of 19)	intron (NM_029008, intron 1 of 19)	9647.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	8.01	10.6	1.85	6.07	4.2	8.04	2.11	2.65	3.75
Merged-chr10-56737262-3	chr10	56736759	56737759	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305278.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	12.01	12.44	3.7	12.14	8.86	27.33	11.62	6.19	8.12
Merged-chr14-105397677-3	chr14	105397157	105398157	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29902.0	NR_045859	71362.0	Mm.410781	NR_045859	ENSMUSG00000115548	5430440P10Rik	-	RIKEN cDNA 5430440P10 gene	ncRNA	8.01	3.23	1.85	3.37	2.8	1.61	0.0	4.86	2.5
Merged-chr7-143086627-1	chr7	143086127	143087127	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020277, intron 5 of 24)	intron (NM_020277, intron 5 of 24)	8015.0	NM_020277	56843.0	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	4.58	3.69	0.92	3.37	0.47	0.0	1.06	0.0	1.87
Merged-chr11-69801120-1	chr11	69800620	69801620	+	935.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010198, intron 1 of 5)	CpG	596.0	NM_001291104	14166.0	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	14.87	2.76	4.62	4.72	3.27	3.22	6.34	2.21	9.99
Merged-chr18-80938252-2	chr18	80937737	80938737	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-4179.0	NM_015805	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	2.29	1.84	0.0	4.72	4.2	1.61	3.17	0.44	1.25
Merged-chr2-76675343-4	chr2	76674953	76675953	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_031256, exon 1 of 8)	5' UTR (NM_031256, exon 1 of 8)	138.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	74.94	55.75	71.22	95.14	54.11	79.58	78.16	45.1	47.46
Merged-chr2-75823962-3	chr2	75823452	75824452	+	935.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8225.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	12.01	18.89	14.8	21.59	17.26	16.88	29.57	26.97	11.87
Merged-chr11-69121737-1	chr11	69121237	69122237	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033041, intron 2 of 3)	intron (NM_033041, intron 2 of 3)	1284.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	18.88	12.44	20.35	14.17	6.53	4.82	26.4	14.59	23.11
Merged-chr2-126466791-1	chr2	126466291	126467291	+	935.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	24762.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	4.0	5.07	5.55	13.49	6.06	8.04	1.06	3.98	1.87
Merged-chr2-180225872-3	chr2	180225377	180226377	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081171)	promoter-TSS (NM_001081171)	-18.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	2.86	0.46	6.47	2.02	0.47	0.0	4.22	0.44	0.0
Merged-chr15-62106708-3	chr15	62106190	62107190	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	67433.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.3	6.91	9.25	16.19	8.86	11.25	4.22	8.84	1.25
Merged-chr19-5807912-3	chr19	5807390	5808390	+	934.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5218.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	147.02	130.86	120.24	150.46	89.1	125.39	161.6	142.82	98.05
Merged-chr6-33982877-3	chr6	33982386	33983386	+	934.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46562.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	22.88	23.04	29.6	22.94	16.79	35.37	40.14	48.2	33.1
Merged-chr8-35379377-3	chr8	35378876	35379876	+	934.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3635.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	36.04	28.11	24.05	32.39	19.13	31.35	32.74	27.86	13.74
Merged-chr12-102455876-3	chr12	102455374	102456374	+	934.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13260.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	157.31	181.55	123.02	257.07	200.13	179.24	236.59	346.22	137.4
Merged-chr10-20966301-3	chr10	20965800	20966800	+	934.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358561, intron 6 of 22)	intron (NM_001358561, intron 6 of 22)	13753.0	NM_001358561	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	5.15	4.15	0.0	3.37	3.27	1.61	6.34	2.65	0.62
Merged-chr19-4295560-3	chr19	4295045	4296045	+	934.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	10677.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	69.79	93.08	62.9	91.76	54.58	109.32	104.56	93.3	69.95
Merged-chr2-90490473-3	chr2	90489969	90490969	+	934.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11295.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	115.55	129.94	101.74	109.98	80.71	81.99	124.63	165.37	89.31
Merged-chr4-135947093-3	chr4	135946625	135947625	+	934.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357529)	promoter-TSS (NM_001357529)	-281.0	NM_001357529	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	285.45	273.71	184.07	333.99	332.62	201.75	401.35	381.15	169.25
Merged-chr16-94590486-3	chr16	94589989	94590989	+	934.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	19582.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	23.45	26.26	9.25	17.54	13.53	16.88	14.79	7.52	16.24
Merged-chr14-50908385-3	chr14	50907886	50908886	+	934.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15131.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	21.17	18.43	27.75	23.62	18.66	36.17	8.45	8.84	24.98
Merged-chr16-36934370-3	chr16	36933876	36934876	+	934.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008225)	promoter-TSS (NM_008225)	-607.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	112.69	134.09	98.97	142.37	129.69	128.61	164.76	176.42	88.06
Merged-chr19-12441695-1	chr19	12441195	12442195	+	934.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13790.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	96.68	136.39	74.92	108.63	87.7	104.49	232.36	237.89	138.02
Merged-chr13-109903078-1	chr13	109902578	109903578	+	934.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_035442)	promoter-TSS (NR_035442)	-731.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	3.43	1.84	2.77	4.72	3.27	0.8	6.34	0.88	0.0
Merged-chr10-89599534-2	chr10	89599058	89600058	+	934.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001310710, exon 1 of 10)	5' UTR (NM_001310710, exon 1 of 10)	257.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	9.72	5.07	4.62	2.7	9.33	3.22	11.62	8.4	6.87
Merged-chr11-103419338-3	chr11	103418860	103419860	+	934.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	188.78	126.72	126.72	199.04	99.83	147.09	258.77	271.05	112.42
Merged-chr1-125519402-1	chr1	125518902	125519902	+	934.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41193.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	2.86	0.92	2.77	10.8	5.13	8.84	9.51	4.86	5.0
Merged-chr4-88167225-3	chr4	88166700	88167700	+	934.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 5 of 43)	intron (NM_001081184, intron 5 of 43)	45160.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	25.17	19.81	12.95	23.62	23.33	14.47	25.35	34.49	21.86
Merged-chr15-12230372-3	chr15	12229888	12230888	+	934.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 2 of 15)	intron (NM_001356498, intron 2 of 15)	25360.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	8.01	7.37	9.25	16.19	6.06	4.02	6.34	10.61	3.75
Merged-chr2-31761850-3	chr2	31761350	31762350	+	934.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	1677.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	98.97	108.75	91.57	98.51	73.24	81.99	123.57	93.3	76.82
Merged-chr13-117036488-3	chr13	117036001	117037001	+	934.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10985.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	14.3	17.97	12.95	21.59	16.33	31.35	25.35	18.57	24.36
Merged-chr17-35078056-3	chr17	35077540	35078540	+	934.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027366, intron 2 of 2)	intron (NM_027366, intron 2 of 2)	1098.0	NM_027366	70274.0	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	37.76	21.66	15.72	37.11	33.12	30.54	44.36	39.35	23.11
Merged-chr5-23387094-3	chr5	23386584	23387584	+	934.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47269.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.72	11.52	1.85	14.84	10.73	3.22	10.56	4.86	3.75
Merged-chr6-136464320-6	chr6	136463825	136464825	+	934.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-48756.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	149.31	207.35	139.67	147.76	184.27	142.27	188.0	187.92	109.92
Merged-chr1-80822369-2	chr1	80821889	80822889	+	934.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63836.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	10.87	11.52	5.55	12.82	8.4	9.65	11.62	5.75	9.37
Merged-chr11-21549958-3	chr11	21549462	21550462	+	934.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21972.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	45.19	50.69	13.87	60.05	42.92	21.7	71.82	53.5	38.72
Merged-chr13-99211185-3	chr13	99210667	99211667	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	26344.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	13.73	12.44	7.4	15.52	12.13	4.82	27.46	15.48	4.37
Merged-chr4-63494976-3	chr4	63494456	63495456	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028640, exon 1 of 12)	exon (NM_028640, exon 1 of 12)	1035.0	NM_001008793	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	17.73	8.29	7.4	14.17	8.4	0.0	8.45	3.98	1.87
Merged-chr7-47072758-3	chr7	47072267	47073267	+	934.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10457.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	12.59	11.52	12.95	11.47	7.93	8.84	23.24	11.05	6.87
Merged-chr15-53237687-2	chr15	53237190	53238190	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	108493.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	6.29	7.37	1.85	12.82	6.06	8.04	5.28	1.77	3.12
Merged-chr9-100458483-3	chr9	100457980	100458980	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033543, exon 7 of 7)	3' UTR (NM_001033543, exon 7 of 7)	27993.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	95.53	79.72	66.6	81.64	73.71	114.14	51.75	32.28	34.97
Merged-chr8-75081941-5	chr8	75081376	75082376	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11742.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	98.97	94.0	89.72	120.77	76.97	90.02	108.79	100.37	75.57
Merged-chr1-60899467-2	chr1	60898955	60899955	+	934.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9570.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	56.06	45.62	37.92	2.02	2.8	3.22	78.16	52.18	44.34
Merged-chr17-12135231-2	chr17	12134768	12135768	+	934.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	15984.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	5.15	5.99	11.1	6.07	5.6	12.06	6.34	5.75	6.25
Merged-chr15-38292175-3	chr15	38291663	38292663	+	934.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289471, exon 5 of 5)	3' UTR (NM_001289471, exon 5 of 5)	7737.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	7.44	19.35	19.42	11.47	16.33	27.33	27.46	15.92	23.11
Merged-chr2-153346414-3	chr2	153345916	153346916	+	934.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040318)	promoter-TSS (NR_040318)	277.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	149.88	140.54	164.64	152.49	97.03	127.8	146.81	123.81	105.55
Merged-chr5-38260451-3	chr5	38259891	38260891	+	934.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356960, exon 1 of 5)	5' UTR (NM_001356960, exon 1 of 5)	206.0	NM_025480	66309.0	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	152.17	168.19	129.49	142.37	121.76	114.94	292.56	319.24	192.98
Merged-chr8-69809069-3	chr8	69808580	69809580	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198101, intron 1 of 20)	intron (NM_198101, intron 1 of 20)	393.0	NM_198101	78816.0	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	72.08	84.32	70.3	64.77	67.64	94.04	77.1	73.4	44.97
Merged-chr9-110071252-3	chr9	110070743	110071743	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205330, intron 14 of 18)	intron (NM_001205330, intron 14 of 18)	19222.0	NM_001311164	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	4.58	8.29	12.95	9.45	7.93	3.22	3.17	7.96	8.74
Merged-chr11-118479781-1	chr11	118479281	118480281	+	934.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153103, intron 3 of 13)	B1_Mus2|SINE|Alu	2949.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	19.45	17.97	32.37	31.04	34.52	39.39	41.19	36.7	18.11
Merged-chr2-30967748-4	chr2	30967232	30968232	+	934.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144884, exon 1 of 5)	exon (NM_144884, exon 1 of 5)	186.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	302.62	280.62	243.26	240.2	271.97	253.19	311.57	320.57	217.34
Merged-chr1-16696807-1	chr1	16696307	16697307	+	934.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159711, intron 2 of 4)	intron (NM_001159711, intron 2 of 4)	8351.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	14.87	5.53	7.4	14.17	10.73	17.68	7.39	6.63	2.5
Merged-chr8-4258434-3	chr8	4257936	4258936	+	934.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183315, exon 2 of 2)	exon (NM_183315, exon 2 of 2)	838.0	NM_183315	330695.0	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	1.72	5.53	1.85	6.07	2.33	1.61	10.56	1.33	3.75
Merged-chr9-9653655-3	chr9	9653148	9654148	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240783.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	8.58	11.98	9.25	8.1	8.86	4.82	15.84	13.71	11.24
Merged-chr9-44551340-3	chr9	44550847	44551847	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24926.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.15	10.14	12.02	22.27	20.06	23.31	32.74	32.28	25.61
Merged-chr16-3706898-3	chr16	3706402	3707402	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161790)	TTS (NM_001161790)	11222.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	7.44	3.69	1.85	11.47	9.8	16.08	17.96	7.52	7.49
Merged-chr16-16104401-3	chr16	16103907	16104907	+	934.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 5 of 18)	RMER1B|Other|Other	42444.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	3.43	2.3	1.85	3.37	0.47	1.61	4.22	2.21	3.75
Merged-chr1-120033252-3	chr1	120032770	120033770	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 4 of 13)	intron (NM_001012322, intron 4 of 13)	26290.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	6.29	7.83	5.55	6.07	2.8	4.82	24.29	19.46	13.74
Merged-chr5-81020972-3	chr5	81020515	81021515	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	263.0	NM_001359830	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	16.59	8.75	11.1	11.47	3.27	8.04	11.62	7.52	2.5
Merged-chr2-151980028-4	chr2	151979451	151980451	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146127, intron 1 of 1)	CpG	268.0	NM_146127	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	50.34	41.47	33.3	37.11	36.85	67.52	36.97	40.24	28.73
Merged-chr11-114747951-3	chr11	114747450	114748450	+	934.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-17439.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	40.62	33.18	57.35	42.51	16.33	31.35	45.42	31.84	29.98
Merged-chr5-25436296-3	chr5	25435791	25436791	+	934.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081383, intron 2 of 58)	PB1D9|SINE|Alu	62492.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	1.72	3.69	0.0	2.02	5.13	0.0	1.06	2.21	3.75
Merged-chr2-172437750-3	chr2	172437181	172438181	+	934.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2897.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	29.75	35.02	27.75	41.83	37.79	39.39	20.07	22.11	18.74
Merged-chr15-79454999-2	chr15	79454489	79455489	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12846.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	34.9	21.66	22.2	38.46	23.33	20.09	33.8	42.45	14.99
Merged-chr6-116193108-2	chr6	116192640	116193640	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	CpG	234.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	165.9	101.37	90.65	164.63	104.96	123.78	165.82	117.17	52.46
Merged-chr12-61994456-2	chr12	61993950	61994950	+	934.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	471283.0	NM_001310586	238205.0	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	2.29	3.23	5.55	5.4	5.13	13.66	5.28	3.98	2.5
Merged-chr4-141638343-1	chr4	141637843	141638843	+	934.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033150, intron 6 of 19)	intron (NM_001033150, intron 6 of 19)	-14509.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	18.31	25.8	31.45	10.12	12.6	12.06	66.54	36.26	16.24
Merged-chr13-58066995-1	chr13	58066495	58067495	+	934.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	35433.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	106.97	129.02	62.9	118.08	137.62	111.73	106.67	107.89	76.19
Merged-chr6-52955502-3	chr6	52955017	52956017	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-45897.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	12.59	21.2	12.02	16.19	16.33	22.51	14.79	19.46	14.99
Merged-chr3-137997480-1	chr3	137996980	137997980	+	934.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-15931.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.86	7.37	1.85	6.75	7.46	8.04	3.17	1.33	1.25
Merged-chr6-50973546-1	chr6	50973046	50974046	+	934.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197431.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	7.44	9.22	8.32	12.14	12.6	20.9	45.42	33.16	42.47
Merged-chr9-110663054-3	chr9	110662556	110663556	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	L1MB4|LINE|L1	6553.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	24.03	18.43	17.57	14.84	7.0	16.08	31.69	15.48	23.73
Merged-chr13-4191164-3	chr13	4190662	4191662	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013778)	promoter-TSS (NM_013778)	-25.0	NM_013778	27384.0	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	17.16	27.19	14.8	28.34	16.79	23.31	27.46	25.65	17.49
Merged-chr8-41047456-3	chr8	41046956	41047956	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5525.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	13.73	13.82	7.4	49.93	33.59	49.83	57.03	47.75	11.87
Merged-chr5-136583871-3	chr5	136583366	136584366	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16376.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	6.29	4.15	0.0	4.72	2.33	3.22	10.56	7.52	7.49
Merged-chr10-68091996-3	chr10	68091488	68092488	+	934.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112418.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	27.46	19.81	13.87	29.01	24.26	14.47	15.84	21.67	9.99
Merged-chr4-101213758-3	chr4	101213243	101214243	+	934.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	MIR|SINE|MIR	51539.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	74.37	65.43	56.42	74.22	52.72	68.32	76.05	83.13	58.08
Merged-chr11-51650888-3	chr11	51650377	51651377	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027958)	promoter-TSS (NR_027958)	-77.0	NR_027958	97775.0	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	8.58	4.15	12.95	4.72	3.27	0.0	3.17	2.65	6.25
Merged-chr19-37535247-3	chr19	37534761	37535761	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15157.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	13.73	11.52	7.4	12.82	3.73	11.25	9.51	3.54	2.5
Merged-chr9-72111201-3	chr9	72110664	72111664	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253862)	promoter-TSS (NM_001253862)	37.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	97.25	68.66	73.07	113.35	101.7	84.4	101.39	59.25	44.97
Merged-chr11-8708858-3	chr11	8708345	8709345	+	934.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44310.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	66.93	66.81	30.52	77.59	84.44	65.11	96.11	88.43	60.58
Merged-chr17-40716474-2	chr17	40715982	40716982	+	934.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-10638.0	NM_001038500	619517.0	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	9.72	9.22	3.7	6.07	8.4	5.63	23.24	14.59	10.62
Merged-chr9-35114714-2	chr9	35114227	35115227	+	934.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2001.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	59.49	64.05	50.87	56.0	45.25	50.64	78.16	62.79	70.57
Merged-chr2-35451804-3	chr2	35451281	35452281	+	934.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	9668.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	70.93	62.67	73.07	62.07	48.52	57.07	41.19	35.82	41.84
Merged-chr1-55766946-3	chr1	55766445	55767445	+	934.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-164296.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	21.17	25.8	30.52	23.62	24.26	31.35	39.08	45.1	13.74
Merged-chr2-165318637-3	chr2	165318133	165319133	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	2193.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	300.33	258.96	184.99	300.92	293.9	270.88	258.77	349.31	151.76
Merged-chr11-97997547-3	chr11	97997044	97998044	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	59.49	47.92	43.47	39.81	33.59	17.68	55.98	48.64	24.98
Merged-chrX-51019980-3	chrX	51019484	51020484	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1966.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	38.33	32.72	23.12	35.09	14.0	27.33	42.25	40.68	23.11
Merged-chr5-129779242-3	chr5	129778732	129779732	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133900, exon 3 of 8)	5' UTR (NM_133900, exon 3 of 8)	8021.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	4.58	5.53	6.47	8.77	8.4	9.65	11.62	10.17	7.49
Merged-chr10-6712473-3	chr10	6711967	6712967	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46126.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.29	5.07	7.4	7.42	5.6	8.04	6.34	11.05	1.25
Merged-chr16-18687569-3	chr16	18687069	18688069	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57631.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	9.72	6.45	0.0	28.34	20.99	20.9	4.22	7.07	5.62
Merged-chr8-80265113-3	chr8	80264617	80265617	+	934.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207109.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	14.87	14.28	21.27	21.59	7.93	26.53	22.18	14.59	13.74
Merged-chr10-111446450-2	chr10	111445955	111446955	+	934.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26772.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	7.44	5.07	5.55	17.54	4.2	8.04	15.84	8.4	9.37
Merged-chr19-17319942-3	chr19	17319451	17320451	+	934.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	19554.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	48.62	46.54	33.3	32.39	28.46	31.35	71.82	64.11	47.46
Merged-chr11-83714191-3	chr11	83713736	83714736	+	934.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B2|LTR|ERVK	5232.0	NM_007969	14038.0	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	25.74	19.81	15.72	24.29	20.06	10.45	12.67	4.42	11.87
Merged-chr2-102990899-3	chr2	102990404	102991404	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82609.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	37.76	25.34	40.7	62.75	45.25	50.64	48.58	64.11	39.35
Merged-chr8-88637777-3	chr8	88637290	88638290	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1662.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	9.15	9.22	7.4	16.19	6.53	6.43	6.34	7.07	3.75
Merged-chr7-143048118-3	chr7	143047618	143048618	+	934.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	MTC|LTR|ERVL-MaLR	-4632.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	16.59	8.75	9.25	12.14	10.73	15.27	11.62	8.4	5.62
Merged-chr4-155944481-3	chr4	155943987	155944987	+	934.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284312, intron 1 of 7)	intron (NM_001284312, intron 1 of 7)	329.0	NM_001284312	140499.0	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	215.66	175.56	193.32	221.98	156.75	169.6	388.68	370.98	172.37
Merged-chr4-7457647-2	chr4	7457161	7458161	+	934.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103027.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	12.59	16.59	15.72	10.8	20.06	23.31	35.91	28.3	19.36
Merged-chr10-88682170-4	chr10	88681670	88682670	+	934.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 1 of 5)	B1_Mus1|SINE|Alu	853.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	213.38	252.05	125.79	260.44	218.79	171.21	324.25	381.15	129.28
Merged-chr17-36205580-3	chr17	36205086	36206086	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15435.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	13.73	14.75	8.32	31.71	15.39	11.25	12.67	18.57	12.49
Merged-chr14-61310567-3	chr14	61310067	61311067	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177337, intron 1 of 1)	intron (NM_177337, intron 1 of 1)	814.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	79.52	93.08	39.77	112.68	104.03	138.25	38.02	44.66	44.97
Merged-chr8-10899860-3	chr8	10899350	10900350	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-72.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	55.49	43.77	25.9	68.82	65.78	49.03	45.42	32.28	13.74
Merged-chr8-60963001-3	chr8	60962497	60963497	+	934.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-8198.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	14.87	14.75	1.85	7.42	10.73	10.45	15.84	9.73	6.25
Merged-chr14-61802055-3	chr14	61801548	61802548	+	934.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-119675.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	36.04	61.28	46.25	43.86	27.52	32.15	40.14	57.92	31.23
Merged-chr1-155471574-1	chr1	155471074	155472074	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54130.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	9.15	12.9	6.47	21.59	10.26	6.43	19.01	12.38	6.25
Merged-chr12-8511228-2	chr12	8510738	8511738	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-11229.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	10.87	10.14	3.7	34.41	25.19	21.7	96.11	146.8	59.95
Merged-chr11-85234617-1	chr11	85234117	85235117	+	934.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028329)	promoter-TSS (NR_028329)	503.0	NM_025825	66884.0	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	292.89	278.31	180.37	319.14	275.71	285.34	257.71	229.48	133.65
Merged-chr8-8653632-1	chr8	8653132	8654132	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	7141.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	4.0	6.91	1.85	10.8	5.6	4.02	5.28	3.98	7.49
Merged-chr14-69732242-1	chr14	69731742	69732742	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130166)	promoter-TSS (NR_130166)	328.0	NM_134078	105513.0	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	101.83	101.83	86.95	78.94	83.04	70.73	91.89	96.39	47.46
Merged-chr1-184626629-1	chr1	184626129	184627129	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-68938.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	10.87	4.15	3.7	5.4	3.73	4.02	4.22	1.33	2.5
Merged-chr1-156989729-1	chr1	156989229	156990229	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-50103.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	2.29	2.76	1.85	6.75	8.86	3.22	6.34	2.21	7.49
Merged-chr6-81622695-1	chr6	81622195	81623195	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	272968.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	2.86	4.61	9.25	7.42	5.6	9.65	1.06	2.65	5.0
Merged-chr5-115510493-3	chr5	115510026	115511026	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3850.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	42.9	58.52	31.45	71.52	39.65	68.32	49.64	53.5	63.08
Merged-chr2-168231138-1	chr2	168230638	168231638	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001310084)	promoter-TSS (NM_001310084)	516.0	NM_001160330	69372.0	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	144.16	76.03	86.95	121.45	73.71	81.99	78.16	54.83	44.97
Merged-chr8-125416401-1	chr8	125415901	125416901	+	934.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76432.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.0	1.84	0.0	1.35	2.33	3.22	4.22	2.65	3.75
Merged-chr13-23718053-2	chr13	23717557	23718557	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16A3|LTR|ERVK	-7203.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	96.68	75.11	56.42	96.48	58.78	53.85	87.66	98.16	55.58
Merged-chr14-122296631-1	chr14	122296131	122297131	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-62993.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	5.15	5.99	21.27	5.4	6.53	4.02	8.45	7.52	8.74
Merged-chr1-51938951-1	chr1	51938451	51939451	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	18.31	17.05	10.17	30.36	24.26	47.42	16.9	11.5	14.36
Merged-chr12-119069988-1	chr12	119069488	119070488	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103567.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	3.43	5.53	14.8	6.75	5.13	3.22	3.17	3.1	5.0
Merged-chr9-36768639-3	chr9	36768128	36769128	+	934.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	302.62	562.16	310.78	311.04	512.69	305.44	443.6	582.33	226.7
Merged-chr9-93184290-1	chr9	93183790	93184790	+	934.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178557.0	NR_040756	78349.0	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	1.72	3.69	2.77	6.07	4.2	4.82	0.0	2.21	3.12
Merged-chr1-135132609-3	chr1	135132112	135133112	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356382)	promoter-TSS (NM_001356382)	-37.0	NM_007955	13924.0	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	12.01	4.15	12.95	11.47	6.53	7.23	4.22	2.21	6.25
Merged-chr17-29492090-6	chr17	29491517	29492517	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008842, exon 4 of 6)	exon (NM_008842, exon 4 of 6)	972.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	215.66	267.72	241.41	127.52	82.57	98.87	232.36	207.38	163.0
Merged-chr1-191447620-3	chr1	191447117	191448117	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	17431.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	22.31	5.99	1.85	12.14	7.93	2.41	11.62	9.29	5.62
Merged-chrX-77795330-3	chrX	77794838	77795838	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016979, intron 1 of 8)	CpG	622.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	153.31	205.05	121.17	170.7	211.79	175.23	160.54	189.25	84.31
Merged-chr2-32450012-3	chr2	32449503	32450503	+	933.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	-454.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	66.36	75.57	88.8	68.82	50.38	73.95	79.21	101.7	93.05
Merged-chr6-128767014-3	chr6	128766577	128767577	+	933.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	21564.0	NM_001159904	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.72	3.23	6.47	6.75	5.13	11.25	2.11	7.07	1.25
Merged-chr3-18624969-2	chr3	18624486	18625486	+	933.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144509.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	10.3	8.75	3.7	49.25	58.78	45.01	47.53	73.84	50.59
Merged-chr2-60815052-3	chr2	60814563	60815563	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	66375.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	26.89	42.85	18.5	43.86	35.92	23.31	43.3	37.58	25.61
Merged-chr10-10556024-3	chr10	10555537	10556537	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	2170.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	118.42	158.51	84.17	121.45	150.68	116.55	182.72	175.1	113.04
Merged-chr11-106255776-3	chr11	106255264	106256264	+	933.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008950)	promoter-TSS (NM_008950)	320.0	NM_025310	56095.0	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	137.29	112.89	145.22	138.32	86.77	124.59	140.47	131.32	63.7
Merged-chr5-113810257-3	chr5	113809767	113810767	+	933.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	-9915.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	6.29	5.53	22.2	4.72	1.4	9.65	11.62	3.54	8.74
Merged-chrX-71815998-2	chrX	71815538	71816538	+	933.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290781)	promoter-TSS (NM_001290781)	-42.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	107.55	136.39	77.7	145.06	145.55	62.7	160.54	175.1	86.18
Merged-chr1-131253796-2	chr1	131253298	131254298	+	933.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019777)	TTS (NM_019777)	-8620.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	69.22	56.68	64.75	19.57	8.4	14.47	51.75	55.27	31.85
Merged-chr1-64617719-3	chr1	64617233	64618233	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025964)	promoter-TSS (NM_025964)	-565.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	145.3	205.97	191.47	143.04	135.75	155.13	141.53	196.32	128.65
Merged-chr15-31532190-3	chr15	31531709	31532709	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1172.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	18.88	25.8	24.97	35.09	26.59	41.8	23.24	20.78	24.36
Merged-chr16-44109315-3	chr16	44108810	44109810	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358203, intron 6 of 14)	intron (NM_001358203, intron 6 of 14)	29949.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	34.9	39.17	48.1	37.11	22.86	53.85	45.42	44.22	19.98
Merged-chr11-114934401-3	chr11	114933899	114934899	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199221)	promoter-TSS (NM_199221)	-13.0	NM_199221	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	72.08	65.43	75.85	114.03	83.04	100.47	96.11	86.66	45.59
Merged-chr8-24424425-3	chr8	24423932	24424932	+	933.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14514.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	13.73	12.9	15.72	19.57	9.8	25.72	22.18	19.46	38.72
Merged-chr9-16042840-1	chr9	16042340	16043340	+	933.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 3 of 24)	intron (NM_001080814, intron 3 of 24)	-168284.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	4.58	4.61	1.85	12.14	9.33	4.82	2.11	5.31	3.75
Merged-chr17-24720783-3	chr17	24720295	24721295	+	933.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027900)	promoter-TSS (NR_027900)	6.0	NR_002897	104366.0	Mm.157452	NR_002897	ENSMUSG00000077709	Snora64	MBI-29|Rnu64	small nucleolar RNA, H/ACA box 64	snoRNA	192.21	163.12	125.79	179.47	197.8	140.66	120.41	183.5	112.42
Merged-chr11-76479348-3	chr11	76478821	76479821	+	933.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	-10856.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	229.97	206.89	120.24	251.67	197.8	194.52	181.66	220.2	100.55
Merged-chr1-106099331-3	chr1	106098832	106099832	+	933.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72192.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	20.02	16.13	13.87	27.66	17.26	19.29	22.18	28.3	21.23
Merged-chr7-132714352-1	chr7	132713852	132714852	+	933.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	62564.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	40.62	38.71	52.72	51.28	72.31	58.68	34.85	30.07	14.36
Merged-chr9-108443533-3	chr9	108443027	108444027	+	933.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004192, intron 2 of 3)	intron (NM_001004192, intron 2 of 3)	7045.0	NM_001004192	434439.0	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	8.01	8.75	11.1	13.49	6.53	17.68	4.22	5.31	7.49
Merged-chr15-26362286-3	chr15	26361778	26362778	+	933.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	53230.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	19.45	23.04	8.32	43.86	45.25	50.64	30.63	39.35	25.61
Merged-chr19-34435442-3	chr19	34434954	34435954	+	933.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39681.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	28.6	24.42	20.35	26.99	32.19	17.68	22.18	12.82	8.12
Merged-chr10-94098267-1	chr10	94097767	94098767	+	933.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 5 of 20)	intron (NM_053072, intron 5 of 20)	-49664.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	2.29	3.69	7.4	1.35	1.4	3.22	17.96	10.61	4.37
Merged-chr2-158046502-3	chr2	158046009	158047009	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027434, intron 3 of 6)	Tigger6a|DNA|TcMar-Tigger	18012.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	34.9	40.09	37.92	33.06	28.46	41.8	39.08	35.82	28.73
Merged-chr14-64883284-3	chr14	64882812	64883812	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	L1MC1|LINE|L1	66545.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	39.47	78.33	45.32	36.43	37.79	50.64	40.14	32.28	38.1
Merged-chr3-116130379-3	chr3	116129878	116130878	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011693)	promoter-TSS (NM_011693)	-690.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	58.92	51.61	24.05	61.4	50.85	49.83	58.09	68.98	25.61
Merged-chr11-20656057-3	chr11	20655542	20656542	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24065.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	12.59	6.45	0.0	5.4	5.13	12.86	5.28	3.1	9.99
Merged-chr10-19506599-3	chr10	19506087	19507087	+	933.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152785, intron 2 of 2)	intron (NR_152785, intron 2 of 2)	11944.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	37.18	34.56	38.85	40.48	24.26	51.44	46.47	22.55	25.61
Merged-chr5-99358181-3	chr5	99357682	99358682	+	933.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-105255.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	60.64	94.92	49.95	85.01	73.71	91.63	67.6	88.88	51.84
Merged-chr5-140771876-3	chr5	140771384	140772384	+	933.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	47757.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	37.76	38.25	38.85	43.86	34.52	58.68	20.07	28.3	14.36
Merged-chrX-71222969-4	chrX	71222502	71223502	+	933.6041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	intron (NM_001358113, intron 1 of 15)	7928.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	28.03	32.72	18.5	25.64	14.46	20.9	35.91	22.11	15.61
Merged-chr2-181276224-2	chr2	181275729	181276729	+	933.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	11737.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.15	11.06	5.55	52.63	32.66	66.71	83.44	82.24	42.47
Merged-chr11-120360229-3	chr11	120359730	120360730	+	933.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	6.86	3.69	0.0	5.4	2.33	6.43	3.17	3.1	3.75
Merged-chr10-127538054-3	chr10	127537563	127538563	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008512)	TTS (NM_008512)	-3504.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.15	5.07	12.95	12.14	2.8	7.23	5.28	9.29	2.5
Merged-chr19-37180753-3	chr19	37180267	37181267	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045329, intron 2 of 2)	ID_B1|SINE|B4	-4704.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	38.33	16.13	7.4	27.66	6.53	3.22	39.08	26.97	14.99
Merged-chr1-45865521-3	chr1	45865019	45866019	+	933.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60075.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	105.83	149.29	93.42	112.0	113.36	108.51	149.98	198.53	109.29
Merged-chr2-118730660-3	chr2	118730143	118731143	+	933.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	3.43	4.61	4.62	7.42	5.13	8.04	5.28	3.98	7.49
Merged-chr2-75802106-2	chr2	75801606	75802606	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30071.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	18.88	20.27	10.17	31.04	17.73	27.33	17.96	9.29	18.11
Merged-chr16-94206074-3	chr16	94205586	94206586	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	84205.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	13.73	6.45	16.65	16.87	16.33	16.08	8.45	11.5	6.87
Merged-chr14-60273534-3	chr14	60273002	60274002	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 1 of 13)	intron (NM_144843, intron 1 of 13)	8297.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	108.12	123.49	106.37	73.54	63.45	85.2	72.88	70.3	94.3
Merged-chr4-139208448-3	chr4	139207962	139208962	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	14351.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	118.99	116.58	108.22	122.12	78.84	90.02	189.06	215.78	103.67
Merged-chr13-111555464-2	chr13	111554967	111555967	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-5558.0	NR_151444	102636218.0	Mm.343364	NR_151444	ENSMUSG00000085634	Gm15290	-	predicted gene 15290	ncRNA	7.44	2.76	1.85	0.67	1.87	0.0	4.22	3.54	1.25
Merged-chr6-125515670-3	chr6	125515157	125516157	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20897.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	18.31	7.37	7.4	27.66	11.66	5.63	13.73	8.4	6.25
Merged-chr4-59862582-3	chr4	59862092	59863092	+	933.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	L1_Mus4|LINE|L1	52464.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	49.2	54.83	39.77	53.98	41.05	73.14	19.01	24.32	28.73
Merged-chr1-72106395-2	chr1	72105897	72106897	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR87|LTR|ERVL?	-101202.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	5.15	3.69	7.4	74.89	38.72	29.74	65.48	54.83	23.73
Merged-chrX-99853387-2	chrX	99852889	99853889	+	933.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32320.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	2.29	4.15	1.85	1.35	3.27	6.43	2.11	2.65	5.0
Merged-chr15-97663888-3	chr15	97663388	97664388	+	933.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	41934.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	15.45	6.91	9.25	20.24	26.59	27.33	21.12	23.88	15.61
Merged-chr5-122145977-3	chr5	122145471	122146471	+	933.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7909.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	68.07	62.21	64.75	69.5	60.65	98.87	106.67	88.43	83.69
Merged-chr11-99230553-5	chr11	99230024	99231024	+	933.390503	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_020618, exon 1 of 11)	5' UTR (NM_020618, exon 1 of 11)	493.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	234.54	284.76	147.99	232.1	294.37	232.29	305.24	225.51	142.39
Merged-chr2-163743500-3	chr2	163743002	163744002	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	6737.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	66.93	30.41	24.05	45.21	30.79	24.92	49.64	34.93	13.12
Merged-chr10-86731179-3	chr10	86730706	86731706	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153595, exon 5 of 5)	exon (NM_153595, exon 5 of 5)	18441.0	NM_153595	103220.0	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	13.73	10.14	7.4	8.77	13.53	14.47	8.45	12.82	3.75
Merged-chr9-89827172-3	chr9	89826679	89827679	+	933.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040735, exon 1 of 6)	non-coding (NR_040735, exon 1 of 6)	660.0	NR_040735	74700.0	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	6.29	4.61	0.0	5.4	3.27	0.8	5.28	2.65	8.74
Merged-chr2-124264520-2	chr2	124264026	124265026	+	933.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 2 of 20)	intron (NM_001290997, intron 2 of 20)	-42168.0	NR_040612	75946.0	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	4.58	3.69	1.85	4.05	4.67	4.82	3.17	2.21	1.87
Merged-chr7-5051636-3	chr7	5051135	5052135	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026900, exon 1 of 2)	5' UTR (NM_026900, exon 1 of 2)	103.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	18.88	12.44	18.5	12.14	15.39	14.47	28.52	9.73	14.99
Merged-chr1-150099934-4	chr1	150099426	150100426	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015466)	promoter-TSS (NR_015466)	-52.0	NR_015466	320019.0	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	8.58	5.53	1.85	10.12	5.13	12.06	5.28	4.86	3.75
Merged-chr2-160086581-3	chr2	160086067	160087067	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69914.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	127.57	122.57	68.45	143.71	118.03	134.23	82.38	52.62	62.45
Merged-chr6-137704418-1	chr6	137703918	137704918	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30664.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	18.31	17.97	24.05	14.84	8.4	6.43	6.34	7.07	7.49
Merged-chr1-180387109-3	chr1	180386614	180387614	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-56565.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	187.06	176.02	168.34	168.68	125.96	122.98	141.53	136.19	111.17
Merged-chr15-63150094-1	chr15	63149594	63150594	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	329514.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.43	3.69	0.0	14.17	5.13	3.22	3.17	4.86	0.0
Merged-chr4-129811600-3	chr4	129811113	129812113	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8866.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	360.97	306.88	217.36	373.79	247.25	228.28	426.7	520.43	164.88
Merged-chr15-31332848-1	chr15	31332348	31333348	+	933.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	34911.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	17.73	20.27	7.4	39.13	42.45	13.66	22.18	20.34	7.49
Merged-chr13-3725883-3	chr13	3725418	3726418	+	933.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78400.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	12.01	4.15	7.4	11.47	7.93	6.43	2.11	0.44	7.49
Merged-chr13-24776401-3	chr13	24775894	24776894	+	933.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-14457.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	17.73	11.06	4.62	18.22	12.13	16.08	15.84	8.84	9.37
Merged-chrX-155152816-3	chrX	155152318	155153318	+	933.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4969.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	18.88	24.42	21.27	23.62	12.13	32.96	29.57	17.24	10.62
Merged-chr5-135537480-3	chr5	135536989	135537989	+	933.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	7633.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.15	4.15	8.32	18.22	8.86	24.92	7.39	10.61	1.25
Merged-chr1-171442087-3	chr1	171441563	171442563	+	933.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	4502.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	18.88	8.75	10.17	11.47	6.53	3.22	15.84	14.15	19.36
Merged-chr10-127610770-3	chr10	127610261	127611261	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 2 of 88)	intron (NM_008512, intron 2 of 88)	10387.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	24.03	33.64	43.47	45.21	29.39	49.03	46.47	29.18	30.6
Merged-chr18-64516008-3	chr18	64515518	64516518	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 1 of 14)	intron (NM_001142950, intron 1 of 14)	539.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	271.73	324.39	168.34	246.95	320.96	184.07	254.54	324.11	137.4
Merged-chr19-37209162-3	chr19	37208665	37209665	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027314, intron 1 of 5)	intron (NM_027314, intron 1 of 5)	1620.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	106.4	74.65	45.32	64.77	46.65	34.56	133.08	143.7	58.71
Merged-chr10-125995052-3	chr10	125994573	125995573	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177152, intron 4 of 18)	ORR1E|LTR|ERVL-MaLR	28854.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	2.86	0.92	1.85	2.02	2.33	4.82	3.17	0.88	2.5
Merged-chr6-88067925-3	chr6	88067422	88068422	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-16551.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	18.88	10.14	1.85	14.84	6.06	12.06	10.56	11.5	10.62
Merged-chr6-112091036-3	chr6	112090615	112091615	+	933.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119593.0	NR_027865	67336.0	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	18.31	23.96	37.0	18.22	20.53	13.66	14.79	9.29	3.75
Merged-chr10-75146832-3	chr10	75146359	75147359	+	933.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-65214.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	16.02	19.35	11.1	16.19	9.8	22.51	23.24	23.43	8.74
Merged-chr15-58705517-3	chr15	58705058	58706058	+	933.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117869.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	22.31	21.66	21.27	24.29	17.26	24.11	26.4	24.32	11.87
Merged-chr5-76142050-3	chr5	76141554	76142554	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020611, intron 1 of 5)	intron (NM_020611, intron 1 of 5)	1781.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	18.31	12.9	12.02	8.77	12.13	4.02	16.9	14.59	11.24
Merged-chr3-109352510-1	chr3	109352010	109353010	+	933.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	MIRc|SINE|MIR	11827.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	16.02	10.14	20.35	26.99	17.73	25.72	10.56	7.96	1.87
Merged-chr19-32138875-3	chr19	32138366	32139366	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 7 of 9)	intron (NM_144792, intron 7 of 9)	-35726.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	12.01	7.37	0.0	15.52	7.93	11.25	7.39	6.19	9.99
Merged-chr17-7398495-3	chr17	7397998	7398998	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13193.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.43	5.53	0.0	9.45	9.33	16.88	40.14	25.2	9.37
Merged-chr2-61137639-2	chr2	61137147	61138147	+	933.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162496.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	18.31	14.28	5.55	20.24	9.33	6.43	8.45	4.42	0.0
Merged-chr10-68725167-2	chr10	68724681	68725681	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	1435.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	105.26	98.15	115.62	139.67	123.62	94.85	218.63	206.93	102.42
Merged-chr4-75317348-2	chr4	75316826	75317826	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-39034.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	14.87	17.51	20.35	14.84	14.0	28.94	22.18	16.36	21.23
Merged-chr12-108913072-2	chr12	108912565	108913565	+	933.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	18793.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	12.01	15.67	8.32	34.41	31.72	32.96	22.18	27.86	29.35
Merged-chr19-41086901-3	chr19	41086388	41087388	+	933.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-9775.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	4.58	1.38	8.32	7.42	2.8	8.04	5.28	0.44	3.75
Merged-chr2-166976572-3	chr2	166976070	166977070	+	933.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-11853.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	81.8	67.27	101.74	77.59	82.11	74.75	81.33	88.43	64.33
Merged-chr3-88424659-3	chr3	88424151	88425151	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281795, intron 1 of 3)	intron (NM_001281795, intron 1 of 3)	490.0	NM_178696	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	114.98	78.79	55.5	101.88	69.04	36.97	108.79	110.98	49.96
Merged-chr10-80678748-3	chr10	80678259	80679259	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2466.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	252.85	199.52	195.17	228.73	163.74	195.32	237.64	264.42	144.89
Merged-chr6-97506453-3	chr6	97505922	97506922	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-18602.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	24.03	31.33	44.4	18.89	15.39	10.45	35.91	39.35	36.22
Merged-chr9-89267775-3	chr9	89267316	89268316	+	933.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56432.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	119.56	139.62	112.84	188.92	158.15	167.99	135.19	146.36	68.07
Merged-chr18-46472962-3	chr18	46472473	46473473	+	933.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7157.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	34.9	43.31	36.07	60.72	52.72	53.05	25.35	15.48	11.87
Merged-chr11-70254189-3	chr11	70253710	70254710	+	933.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007440, intron 2 of 13)	intron (NM_007440, intron 2 of 13)	1160.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	11.44	2.3	3.7	12.14	3.27	8.04	8.45	7.52	4.37
Merged-chr5-36564768-3	chr5	36564280	36565280	+	933.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	MTEb|LTR|ERVL-MaLR	17617.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	92.67	118.88	71.22	93.11	112.9	69.13	70.76	99.93	74.94
Merged-chr11-75760857-3	chr11	75760359	75761359	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 5 of 5)	intron (NM_009536, intron 5 of 5)	27972.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	85.81	53.91	42.55	71.52	34.99	32.96	106.67	58.81	26.85
Merged-chrX-53797695-3	chrX	53797183	53798183	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291748)	promoter-TSS (NM_001291748)	23.0	NM_001291747	22441.0	Mm.379041	NM_011725	ENSMUSG00000054626	Xlr	-	X-linked lymphocyte-regulated	protein-coding	20.02	29.49	17.57	23.62	27.06	4.82	28.52	18.13	7.49
Merged-chr13-89740953-3	chr13	89740420	89741420	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081249, intron 1 of 14)	intron (NM_001081249, intron 1 of 14)	1592.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	2.86	1.38	5.55	2.02	0.47	3.22	6.34	1.33	3.75
Merged-chr11-110970659-3	chr11	110970146	110971146	+	933.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010604, intron 1 of 1)	MIRb|SINE|MIR	2613.0	NM_001252207	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	44.62	50.23	18.5	69.5	30.32	36.97	57.03	51.73	47.46
Merged-chr10-87732184-3	chr10	87731702	87732702	+	933.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126063.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	12.01	11.52	28.67	33.74	17.73	16.88	21.12	15.48	13.74
Merged-chr1-93411164-1	chr1	93410664	93411664	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357556, intron 24 of 27)	intron (NM_001357556, intron 24 of 27)	34537.0	NM_001301364	110611.0	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	5.15	10.6	12.95	7.42	8.86	4.82	6.34	5.31	11.24
Merged-chr8-126837530-3	chr8	126837039	126838039	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11481.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	21.17	10.6	12.95	29.01	11.66	12.86	14.79	8.4	14.99
Merged-chrX-108813756-1	chrX	108813256	108814256	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081477, intron 6 of 40)	intron (NM_001081477, intron 6 of 40)	20599.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	15.45	21.66	21.27	14.84	19.13	16.88	21.12	19.9	21.86
Merged-chr16-26582265-2	chr16	26581742	26582742	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152416, intron 1 of 12)	intron (NR_152416, intron 1 of 12)	537.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	18.88	14.75	25.9	21.59	20.53	42.6	19.01	19.01	13.74
Merged-chr7-142342031-1	chr7	142341531	142342531	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	30228.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	98.39	62.67	38.85	18.22	6.06	9.65	47.53	62.35	48.09
Merged-chr15-63270559-1	chr15	63270059	63271059	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	209049.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.29	4.61	11.1	2.02	5.13	12.86	1.06	4.86	8.74
Merged-chr8-120488826-1	chr8	120488326	120489326	+	933.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198671)	promoter-TSS (NM_198671)	-40.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	123.56	123.95	123.94	105.26	108.7	116.55	122.52	130.44	82.44
Merged-chr8-3648530-3	chr8	3648030	3649030	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7240.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	8.58	28.57	12.95	12.82	28.46	41.8	21.12	20.78	24.36
Merged-chr11-3382796-3	chr11	3382288	3383288	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-11384.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	11.44	7.83	5.55	7.42	4.2	10.45	8.45	8.4	16.86
Merged-chr6-47943180-3	chr6	47942666	47943666	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027963)	promoter-TSS (NR_027963)	-9.0	NR_027963	232785.0	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|Gm20494	zinc finger protein 783	ncRNA	4.58	1.38	5.55	4.72	4.67	1.61	6.34	4.86	8.74
Merged-chr14-47648394-3	chr14	47647909	47648909	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347524)	promoter-TSS (NM_001347524)	-902.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	74.94	102.29	51.8	56.0	68.11	73.95	54.92	63.23	28.1
Merged-chr7-87924759-1	chr7	87924259	87925259	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	L1M2|LINE|L1	340591.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	16.02	11.06	5.55	14.84	23.79	17.68	15.84	11.05	11.24
Merged-chr3-87377447-1	chr3	87376947	87377947	+	933.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136236, intron 1 of 8)	intron (NM_001136236, intron 1 of 8)	1060.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	24.6	16.13	5.55	12.14	13.06	14.47	103.51	140.61	56.83
Merged-chr7-132788020-1	chr7	132787520	132788520	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-1085.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.58	7.37	4.62	12.14	8.4	13.66	6.34	3.1	2.5
Merged-chr15-88837588-1	chr15	88837088	88838088	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17942.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	2.86	1.38	4.62	6.07	0.0	0.0	3.17	1.33	0.0
Merged-chr7-64077768-1	chr7	64077268	64078268	+	933.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76067.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.57	2.3	3.7	2.02	3.27	3.22	3.17	3.54	7.49
Merged-chr6-28319785-3	chr6	28319288	28320288	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58187.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	10.3	9.22	4.62	10.12	7.93	12.86	8.45	7.52	22.48
Merged-chr6-57034821-2	chr6	57034314	57035314	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-1099.0	NM_134187	171205.0	Mm.222638	NM_134187	ENSMUSG00000061208	Vmn1r8	V1rc32	vomeronasal 1 receptor 8	protein-coding	2.86	5.07	3.7	3.37	7.0	6.43	4.22	4.42	2.5
Merged-chr13-97974987-1	chr13	97974487	97975487	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_012026, intron 16 of 35)	intron (NM_012026, intron 16 of 35)	223875.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	14.87	13.82	12.95	8.77	7.46	9.65	7.39	7.96	5.0
Merged-chr11-8762407-3	chr11	8761899	8762899	+	933.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97864.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	6.86	4.15	3.7	12.82	6.53	4.82	12.67	4.86	2.5
Merged-chr15-6571069-3	chr15	6570551	6571551	+	932.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8796.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	78.94	73.73	74.0	94.46	41.52	102.88	102.45	77.38	84.94
Merged-chr4-136146354-5	chr4	136145843	136146843	+	932.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008321)	TTS (NM_008321)	2521.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	277.45	291.22	156.32	251.67	217.86	135.04	275.66	295.37	181.11
Merged-chr3-88191282-3	chr3	88190770	88191770	+	932.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13485.0	NR_045997	76642.0	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	4.0	5.53	3.7	11.47	2.8	1.61	5.28	4.86	8.12
Merged-chr11-63129659-3	chr11	63129149	63130149	+	932.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302261, intron 1 of 3)	intron (NM_001302261, intron 1 of 3)	667.0	NM_001302261	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	9.15	6.91	9.25	26.99	17.73	18.49	28.52	29.18	12.49
Merged-chr7-16239875-3	chr7	16239360	16240360	+	932.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	2471.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	20.02	19.35	22.2	25.64	25.19	28.13	38.02	27.41	24.36
Merged-chr15-86220296-3	chr15	86219861	86220861	+	932.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	5902.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	74.37	57.14	83.25	76.24	64.84	84.4	78.16	66.77	51.84
Merged-chr16-27435075-3	chr16	27434534	27435534	+	932.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 5 of 9)	intron (NM_001025615, intron 5 of 9)	46078.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	15.45	27.19	20.35	18.89	23.33	28.13	24.29	22.11	23.73
Merged-chr17-88597235-3	chr17	88596755	88597755	+	932.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29300.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	5.15	1.38	1.85	3.37	2.33	1.61	3.17	1.33	0.0
Merged-chr1-130417469-3	chr1	130416976	130417976	+	932.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007827, intron 4 of 9)	intron (NM_007827, intron 4 of 9)	-5348.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	18.31	12.44	5.55	10.12	14.46	3.22	19.01	19.46	18.11
Merged-chr12-55484841-4	chr12	55484392	55485392	+	932.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7755.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	14.87	1.38	1.85	10.12	3.73	2.41	9.51	3.1	2.5
Merged-chr18-65580960-6	chr18	65580468	65581468	+	932.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207255, intron 1 of 5)	CpG	738.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	161.32	105.06	178.52	194.32	138.09	147.9	208.07	90.2	72.45
Merged-chrX-134276909-3	chrX	134276412	134277412	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172540)	promoter-TSS (NM_172540)	72.0	NM_172540	215201.0	Mm.289368	NM_172540	ENSMUSG00000067369	Trmt2b	4732479N06Rik	TRM2 tRNA methyltransferase 2B	protein-coding	21.17	20.74	12.02	22.94	23.79	21.7	39.08	15.92	11.87
Merged-chr4-144890800-3	chr4	144890288	144891288	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2039.0	NM_001172424	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	39.47	28.57	15.72	45.88	29.86	31.35	27.46	17.69	14.99
Merged-chr7-99549888-3	chr7	99549367	99550367	+	932.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-2402.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	42.33	28.11	18.5	26.31	24.26	52.25	16.9	31.39	29.98
Merged-chr10-9882026-3	chr10	9881522	9882522	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	MTB_Mm|LTR|ERVL-MaLR	19018.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	12.01	8.29	1.85	10.12	9.33	18.49	5.28	7.96	3.12
Merged-chr7-118382146-3	chr7	118381656	118382656	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362179, intron 7 of 7)	intron (NM_001362179, intron 7 of 7)	61404.0	NM_001362180	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	7.44	0.46	3.7	11.47	6.53	9.65	9.51	4.86	6.25
Merged-chr5-64900436-3	chr5	64899933	64900933	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32266.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	17.16	10.6	0.0	11.47	7.46	16.88	21.12	14.59	12.49
Merged-chr8-111923682-3	chr8	111923190	111924190	+	932.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033321, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	10123.0	NM_001357348	234740.0	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	1.72	2.3	3.7	0.67	0.47	0.8	6.34	0.44	3.75
Merged-chr7-101848105-3	chr7	101847585	101848585	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303239, intron 2 of 5)	ORR1B1|LTR|ERVL-MaLR	-2754.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	25.74	27.19	28.67	22.27	23.33	28.13	41.19	32.28	32.48
Merged-chr3-69657840-3	chr3	69657334	69658334	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58874.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	66.36	53.45	34.22	47.23	32.66	40.19	60.2	63.67	63.7
Merged-chr9-61242334-3	chr9	61241833	61242833	+	932.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51476.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	32.04	34.1	27.75	19.57	8.86	8.04	30.63	10.17	16.86
Merged-chr17-67351637-4	chr17	67351152	67352152	+	932.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	2807.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	249.99	258.5	139.67	296.2	301.83	220.24	288.34	343.56	148.01
Merged-chr10-80576606-3	chr10	80576236	80577236	+	932.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	560.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	89.24	48.38	114.69	80.29	34.06	64.3	40.14	43.77	44.34
Merged-chr12-113017613-3	chr12	113017103	113018103	+	932.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	3095.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	34.32	32.72	39.77	17.54	8.86	17.68	15.84	8.4	18.74
Merged-chr15-80977841-3	chr15	80977336	80978336	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134091)	promoter-TSS (NM_134091)	71.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	46.34	34.1	26.82	49.25	37.79	30.54	51.75	29.18	25.61
Merged-chr11-16638615-3	chr11	16638180	16639180	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113523.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	53.2	52.53	27.75	44.53	47.58	45.01	44.36	38.91	29.98
Merged-chr6-98846457-3	chr6	98845961	98846961	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	181837.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.86	7.83	1.85	6.07	4.67	0.8	3.17	3.54	0.0
Merged-chr2-164912363-3	chr2	164911863	164912863	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199027)	promoter-TSS (NM_199027)	-613.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	176.19	175.56	127.64	182.17	185.2	137.45	219.69	286.52	134.27
Merged-chr2-140790565-3	chr2	140790067	140791067	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-119091.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	6.86	6.45	1.85	4.72	4.2	0.0	6.34	4.86	6.25
Merged-chr14-25379118-3	chr14	25378645	25379645	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80040.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	64.07	56.22	44.4	84.34	82.57	57.87	50.7	31.39	18.11
Merged-chr18-5127411-3	chr18	5126922	5127922	+	932.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	38309.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	36.61	45.62	40.7	32.39	49.45	49.83	55.98	33.16	32.48
Merged-chr6-53995742-2	chr6	53995234	53996234	+	932.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	MLT1H2|LTR|ERVL-MaLR	17043.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	5.15	3.69	12.95	8.1	8.4	19.29	28.52	24.32	16.86
Merged-chr5-43842901-2	chr5	43842377	43843377	+	932.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23984.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	40.04	46.08	26.82	31.04	31.26	30.54	44.36	28.3	30.6
Merged-chr17-10372440-3	chr17	10371940	10372940	+	932.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	47838.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	30.32	26.73	22.2	32.39	18.66	12.86	12.67	18.57	16.24
Merged-chr2-27025754-3	chr2	27025251	27026251	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 3 of 8)	L2|LINE|L2	2247.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	14.3	12.9	12.95	24.29	14.0	25.72	27.46	28.3	15.61
Merged-chr6-67376221-3	chr6	67375737	67376737	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008354)	promoter-TSS (NM_008354)	-49.0	NM_008354	16162.0	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	9.72	5.07	5.55	15.52	4.67	9.65	9.51	3.54	3.12
Merged-chr1-180422278-3	chr1	180421783	180422783	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	61221.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	13.73	5.99	7.4	14.17	7.0	4.82	9.51	2.65	7.49
Merged-chr11-44545373-3	chr11	44544887	44545887	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	26010.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	57.21	50.23	63.82	52.63	41.05	54.66	69.71	61.46	49.96
Merged-chr16-13866843-3	chr16	13866342	13867342	+	932.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	36303.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	30.32	54.37	46.25	40.48	38.25	48.23	50.7	54.83	46.22
Merged-chr4-141642249-3	chr4	141641767	141642767	+	932.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 3 of 18)	intron (NM_001347237, intron 3 of 18)	-18433.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	102.97	85.71	55.5	37.11	35.92	35.37	133.08	146.36	57.46
Merged-chr3-87028951-3	chr3	87028462	87029462	+	932.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-29622.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	38.9	42.39	38.85	30.36	26.12	35.37	25.35	38.47	24.36
Merged-chr8-72268544-3	chr8	72268021	72269021	+	932.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28503.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	52.06	56.68	29.6	147.76	126.89	126.19	31.69	22.99	26.23
Merged-chr9-100400563-3	chr9	100400089	100401089	+	932.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85884.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.58	1.38	0.0	4.05	3.27	3.22	3.17	2.65	1.25
Merged-chr3-27611332-3	chr3	27610830	27611830	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-26335.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	8.01	4.61	0.0	7.42	3.73	3.22	7.39	1.77	1.25
Merged-chr3-38106194-3	chr3	38105691	38106691	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101928.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	16.59	8.29	7.4	17.54	12.13	6.43	8.45	11.94	10.62
Merged-chr7-19500544-4	chr7	19499992	19500992	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7839.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	87.52	64.51	63.82	70.17	47.58	73.14	108.79	108.33	59.95
Merged-chr17-8836445-3	chr17	8835939	8836939	+	932.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-13546.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	9.15	9.68	5.55	8.77	11.66	4.02	6.34	0.0	0.0
Merged-chr14-46994457-3	chr14	46993954	46994954	+	932.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-6886.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	65.79	75.57	46.25	49.25	27.06	36.97	58.09	73.84	53.71
Merged-chr17-57357813-3	chr17	57357319	57358319	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355723)	promoter-TSS (NM_001355723)	-867.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	69.22	52.53	30.52	66.12	41.05	58.68	102.45	72.96	60.58
Merged-chr3-88504543-3	chr3	88504054	88505054	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1202.0	NM_001002011	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	25.17	13.82	8.32	24.96	9.33	18.49	17.96	3.1	1.87
Merged-chr9-84545541-2	chr9	84545018	84546018	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-228880.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	7.44	7.37	4.62	12.82	12.13	4.82	120.41	69.86	33.1
Merged-chr15-82047471-4	chr15	82046921	82047921	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011482, intron 1 of 2)	CpG	177.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	243.69	305.5	295.99	218.61	273.37	218.63	220.74	252.04	149.26
Merged-chr2-58940661-1	chr2	58940161	58941161	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 9 of 13)	intron (NM_001362394, intron 9 of 13)	185477.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.58	4.15	3.7	10.12	8.86	3.22	4.22	0.44	2.5
Merged-chr5-67828608-3	chr5	67828133	67829133	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	MLT1A|LTR|ERVL-MaLR	18798.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	50.91	35.48	41.62	68.82	35.92	32.15	65.48	41.56	41.22
Merged-chr14-74919342-3	chr14	74918841	74919841	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	28536.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	87.52	60.36	58.27	65.45	49.92	47.42	79.21	85.78	39.35
Merged-chr3-104937920-3	chr3	104937419	104938419	+	932.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23790.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	20.02	17.51	7.4	40.48	20.06	15.27	24.29	26.09	11.87
Merged-chr9-96365608-2	chr9	96365117	96366117	+	932.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	19.45	18.43	8.32	20.24	11.66	4.82	27.46	36.7	13.74
Merged-chr10-20770205-3	chr10	20769729	20770729	+	932.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45151.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	259.71	196.29	142.44	258.42	185.2	148.7	262.99	263.97	109.29
Merged-chr1-177260563-3	chr1	177260057	177261057	+	932.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11790.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	67.5	71.88	55.5	55.33	53.18	65.11	78.16	71.19	49.34
Merged-chr6-134615489-3	chr6	134614986	134615986	+	932.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17002.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	25.74	19.81	7.4	24.29	29.39	16.88	32.74	22.99	8.12
Merged-chr8-117209318-3	chr8	117208818	117209818	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47701.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	13.73	3.23	5.55	3.37	6.06	4.82	6.34	4.86	0.0
Merged-chr15-59717209-3	chr15	59716694	59717694	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68540.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	25.74	20.74	15.72	33.74	14.46	17.68	16.9	13.27	11.24
Merged-chr10-34267549-3	chr10	34267052	34268052	+	932.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14638.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	28.03	21.2	21.27	33.74	34.99	25.72	38.02	26.09	11.87
Merged-chr2-167351106-3	chr2	167350601	167351601	+	932.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1923.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	103.54	67.74	29.6	132.24	85.37	69.93	134.14	117.62	42.47
Merged-chr13-34710450-2	chr13	34709950	34710950	+	932.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-29192.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	12.59	17.05	9.25	17.54	18.19	13.66	14.79	13.71	3.75
Merged-chr2-117962112-3	chr2	117961607	117962607	+	932.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	140179.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	64.64	65.43	61.05	64.1	62.05	91.63	89.78	99.05	66.2
Merged-chr11-45595537-3	chr11	45595005	45596005	+	932.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-212578.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	22.88	24.42	12.95	21.59	27.99	17.68	7.39	6.63	1.87
Merged-chr11-68521569-3	chr11	68521060	68522060	+	932.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 2 of 19)	intron (NM_001004435, intron 2 of 19)	18541.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	30.89	28.57	37.92	21.59	8.4	26.53	19.01	13.71	26.23
Merged-chr18-67607545-3	chr18	67607075	67608075	+	932.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33780.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	69.79	61.28	23.12	62.07	57.85	35.37	33.8	45.1	33.72
Merged-chr19-53496806-1	chr19	53496306	53497306	+	932.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-32010.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	2.29	5.99	3.7	13.49	12.6	9.65	0.0	3.1	2.5
Merged-chr7-100159259-3	chr7	100158762	100159762	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026010)	promoter-TSS (NM_026010)	-15.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	105.26	83.4	107.29	122.8	120.83	108.51	109.84	113.64	86.18
Merged-chr8-122475143-3	chr8	122474650	122475650	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	914.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	206.51	227.63	203.49	175.43	196.4	155.93	158.43	186.15	100.55
Merged-chr5-123150030-5	chr5	123149573	123150573	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 6 of 16)	MIRb|SINE|MIR	7880.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	28.03	28.57	22.2	20.24	16.79	29.74	24.29	21.22	22.48
Merged-chr9-45202541-3	chr9	45202052	45203052	+	932.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1523.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	11.44	6.91	15.72	10.8	9.33	10.45	6.34	5.75	12.49
Merged-chr2-30699928-3	chr2	30699409	30700409	+	932.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-21301.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	43.48	52.53	29.6	44.53	41.05	44.21	42.25	46.87	27.48
Merged-chr6-29166412-3	chr6	29165915	29166915	+	932.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	6.29	1.38	4.62	6.75	2.8	1.61	4.22	2.21	1.25
Merged-chr2-80581078-5	chr2	80580518	80581518	+	932.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355410, exon 1 of 32)	5' UTR (NM_001355410, exon 1 of 32)	164.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	4.58	4.61	3.7	13.49	3.73	4.82	11.62	1.77	1.25
Merged-chr12-59216940-3	chr12	59216474	59217474	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	2509.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	128.71	165.88	86.95	145.06	146.95	139.06	164.76	160.95	113.66
Merged-chr8-120511044-3	chr8	120510548	120511548	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	PB1D7|SINE|Alu	22182.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	9.15	5.07	1.85	6.75	1.87	5.63	6.34	7.96	6.25
Merged-chr1-54449106-3	chr1	54448647	54449647	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10121.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	28.6	33.18	27.75	36.43	27.06	20.9	25.35	13.71	19.36
Merged-chr4-126968244-3	chr4	126967758	126968758	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	-335.0	NM_001114399	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	59.49	35.48	68.45	65.45	28.46	57.87	72.88	46.87	47.46
Merged-chr3-62458537-3	chr3	62458032	62459032	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081295, intron 12 of 13)	intron (NM_001081295, intron 12 of 13)	48456.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	6.86	2.76	9.25	9.45	9.33	12.86	13.73	7.96	6.25
Merged-chr8-70868767-3	chr8	70868365	70869365	+	932.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026964, intron 3 of 4)	CpG-14136	4625.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	10.87	3.23	16.65	13.49	11.2	14.47	2.11	1.33	3.75
Merged-chr13-94868805-3	chr13	94868312	94869312	+	932.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6815.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	2.86	1.84	0.92	4.05	0.93	3.22	3.17	1.33	1.25
Merged-chr1-120072295-3	chr1	120071803	120072803	+	932.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019432, intron 1 of 1)	C-rich|Low_complexity|Low_complexity	1477.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	22.31	15.67	18.5	25.64	17.73	33.76	70.76	49.52	32.48
Merged-chr15-8463026-2	chr15	8462524	8463524	+	932.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18561.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	6.29	2.76	15.72	10.12	8.4	9.65	9.51	22.11	7.49
Merged-chr11-6456293-3	chr11	6455788	6456788	+	932.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11845.0	NM_001347064	77605.0	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre	H2A histone family, member V	protein-coding	7.44	4.15	7.4	2.7	8.86	1.61	9.51	3.54	5.62
Merged-chr4-46508406-2	chr4	46507912	46508912	+	932.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029077, intron 5 of 5)	intron (NM_029077, intron 5 of 5)	19083.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	20.02	22.12	21.27	18.89	12.13	32.15	13.73	18.57	19.98
Merged-chr3-81036281-3	chr3	81035807	81036807	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019971)	promoter-TSS (NM_019971)	-109.0	NM_019971	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	67.5	60.82	52.72	103.23	85.84	84.4	83.44	81.8	43.09
Merged-chr13-67728789-3	chr13	67728269	67729269	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027969)	promoter-TSS (NR_027969)	404.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	29.17	52.99	36.07	41.83	57.85	60.28	134.14	103.91	40.59
Merged-chr9-44721421-3	chr9	44720912	44721912	+	932.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 4 of 21)	CpG	13786.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	5.72	5.99	3.7	20.24	3.27	8.04	6.34	2.65	6.25
Merged-chr4-134510984-3	chr4	134510479	134511479	+	932.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081099)	promoter-TSS (NM_001081099)	-20.0	NM_001081099	69885.0	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	4.58	6.45	7.4	1.35	5.6	4.82	19.01	12.38	2.5
Merged-chr18-34889084-3	chr18	34888597	34889597	+	932.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27890.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	21.74	4.15	12.95	12.82	8.4	11.25	13.73	8.4	5.0
Merged-chr1-74775943-3	chr1	74775448	74776448	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	4056.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	5.15	3.69	1.85	3.37	0.47	4.82	5.28	0.44	3.12
Merged-chr13-45005330-3	chr13	45004828	45005828	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3232.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	48.62	30.87	33.3	53.3	34.06	49.83	20.07	16.8	14.99
Merged-chr7-48749413-3	chr7	48748924	48749924	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39579.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	8.58	9.22	3.7	8.77	8.4	12.06	12.67	6.19	10.62
Merged-chr15-36727907-5	chr15	36727381	36728381	+	932.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	63051.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	16.59	10.6	8.32	6.07	2.8	12.86	6.34	3.98	6.25
Merged-chr13-73488872-2	chr13	73488373	73489373	+	932.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 2 of 13)	intron (NM_145376, intron 2 of 13)	21490.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	17.73	11.98	12.95	18.89	18.66	12.86	20.07	7.96	13.12
Merged-chr6-38823985-3	chr6	38823483	38824483	+	932.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	13328.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	18.88	31.79	21.27	46.56	46.18	44.21	30.63	40.24	24.36
Merged-chr7-47052560-3	chr7	47052063	47053063	+	932.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026436, intron 1 of 2)	intron (NM_026436, intron 1 of 2)	1923.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	127.57	152.06	147.07	144.39	150.68	158.35	230.25	238.33	114.29
Merged-chr12-3110039-3	chr12	3109543	3110543	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-125748.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	323.78	1382.81	1310.66	408.88	1467.64	1257.12	515.42	527.06	1538.21
Merged-chr1-182255243-3	chr1	182254741	182255741	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	26954.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	7.44	4.15	3.7	4.72	5.13	6.43	4.22	4.42	8.12
Merged-chr3-123256870-3	chr3	123256373	123257373	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-10623.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	4.58	1.84	7.4	2.02	2.33	3.22	2.11	4.42	5.0
Merged-chr4-129578724-3	chr4	129578232	129579232	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182783)	promoter-TSS (NM_182783)	-152.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	26.89	17.51	25.9	32.39	17.26	57.07	17.96	19.46	16.86
Merged-chr11-44373043-3	chr11	44372502	44373502	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27061.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	30.32	20.27	12.95	19.57	12.6	6.43	38.02	47.75	45.59
Merged-chr10-7052879-3	chr10	7052365	7053365	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29680.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	58.92	64.05	24.97	70.85	60.18	69.13	20.07	14.59	16.24
Merged-chr9-42944498-3	chr9	42943986	42944986	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175481)	promoter-TSS (NM_175481)	-115.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	17.16	17.05	15.72	10.12	3.73	3.22	7.39	3.1	6.25
Merged-chr11-69118008-3	chr11	69117512	69118512	+	932.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2441.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	69.79	68.2	62.9	65.45	52.25	63.5	59.15	80.03	48.71
Merged-chr2-45110842-1	chr2	45110342	45111342	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_110572)	promoter-TSS (NR_110572)	-109.0	NR_149354	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	225.39	242.37	136.89	239.52	174.01	187.28	257.71	286.52	182.99
Merged-chr9-114844865-1	chr9	114844365	114845365	+	932.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027294)	promoter-TSS (NM_027294)	-713.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	124.14	97.23	74.92	149.11	139.02	97.26	61.26	42.45	16.24
Merged-chr5-140795061-1	chr5	140794561	140795561	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35370.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	33.75	31.33	20.35	51.95	48.05	30.54	7.39	7.96	5.0
Merged-chr10-122617219-3	chr10	122616699	122617699	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31140.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	26.31	17.05	6.47	20.92	19.13	18.49	34.85	44.66	21.86
Merged-chr1-144312344-3	chr1	144311858	144312858	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63254.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	47.48	46.54	30.52	51.28	41.52	39.39	49.64	61.9	41.22
Merged-chr8-84465751-1	chr8	84465251	84466251	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	RLTR12B|LTR|ERVK	50387.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	8.01	13.82	12.95	6.75	13.53	17.68	6.34	2.65	6.25
Merged-chr16-76199560-1	chr16	76199060	76200060	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76947.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	5.72	7.37	12.95	8.1	4.2	6.43	11.62	8.4	2.5
Merged-chr16-77284421-1	chr16	77283921	77284921	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44907.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	2.86	5.07	1.85	4.05	3.73	1.61	6.34	2.65	0.62
Merged-chr11-53479813-1	chr11	53479313	53480313	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183173, exon 1 of 1)	exon (NM_183173, exon 1 of 1)	382.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	1.14	1.84	0.92	1.35	5.6	1.61	2.11	1.77	1.25
Merged-chr9-31211099-1	chr9	31210599	31211599	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 1 of 17)	CpG	749.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	23.45	9.22	12.02	29.01	15.86	32.15	21.12	5.75	12.49
Merged-chr4-132610777-2	chr4	132610286	132611286	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28260.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	62.35	31.33	12.02	98.51	43.85	24.92	57.03	50.85	14.99
Merged-chr1-156593487-2	chr1	156592978	156593978	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	34691.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	2.86	4.15	6.47	6.75	4.2	7.23	4.22	7.96	6.87
Merged-chr14-73446144-1	chr14	73445644	73446644	+	932.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60855.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	156.17	130.86	88.8	144.39	95.63	126.19	117.24	103.47	83.69
Merged-chr2-22933754-3	chr2	22933276	22934276	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	38254.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	8.01	16.59	8.32	8.1	11.2	8.84	13.73	11.94	13.74
Merged-chr14-122830598-1	chr14	122830098	122831098	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-82432.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	4.0	5.07	1.85	2.02	3.27	6.43	5.28	3.98	5.0
Merged-chr9-61671241-2	chr9	61670743	61671743	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243267.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.0	0.92	4.62	4.72	7.0	8.04	11.62	9.29	4.37
Merged-chr3-84745776-1	chr3	84745276	84746276	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69801.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	2.29	2.76	3.7	4.05	1.87	4.82	4.22	1.33	1.25
Merged-chr12-75735096-1	chr12	75734596	75735596	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030750, exon 1 of 3)	exon (NM_030750, exon 1 of 3)	633.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	176.19	222.1	151.69	186.9	192.2	161.56	195.39	191.9	109.29
Merged-chr2-61645655-1	chr2	61645155	61646155	+	932.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149323, intron 8 of 9)	intron (NR_149323, intron 8 of 9)	52558.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	8.58	4.61	11.1	6.75	6.53	1.61	7.39	5.31	11.24
Merged-chr8-104247965-3	chr8	104247457	104248457	+	932.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045642, intron 1 of 8)	intron (NR_045642, intron 1 of 8)	601.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	393.0	541.42	314.48	408.2	479.57	349.65	467.89	553.59	205.47
Merged-chr10-98966865-3	chr10	98966392	98967392	+	931.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	51740.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	40.04	25.34	25.9	41.83	27.52	16.08	15.84	27.86	23.11
Merged-chr10-51534838-3	chr10	51534319	51535319	+	931.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	43921.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	24.03	19.35	8.32	20.92	19.13	27.33	20.07	9.29	18.74
Merged-chr8-75089122-3	chr8	75088613	75089613	+	931.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4505.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	109.26	151.14	109.14	121.45	120.36	128.61	122.52	183.94	99.3
Merged-chr7-80583076-3	chr7	80582570	80583570	+	931.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47951.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	36.61	20.74	12.02	43.18	26.59	28.94	87.66	61.9	31.85
Merged-chr18-65692351-3	chr18	65691845	65692845	+	931.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5923.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	119.56	117.96	73.07	132.24	122.69	97.26	146.81	171.12	103.67
Merged-chr12-55552793-3	chr12	55552269	55553269	+	931.8936769999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-12436.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	12.59	17.51	13.87	18.22	17.73	6.43	14.79	7.96	6.25
Merged-chr13-52578108-3	chr13	52577621	52578621	+	931.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4896.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	116.7	83.4	67.52	105.93	76.04	135.84	95.06	80.03	73.69
Merged-chr11-79023584-3	chr11	79023090	79024090	+	931.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045873)	promoter-TSS (NR_045873)	-7.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	25.17	17.51	13.87	35.09	27.99	23.31	21.12	5.31	6.87
Merged-chr17-5615147-3	chr17	5614620	5615620	+	931.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	122520.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	20.02	17.05	12.95	29.01	18.19	17.68	14.79	9.73	11.24
Merged-chr2-75778337-3	chr2	75777859	75778859	+	931.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-53818.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	32.61	23.5	15.72	43.86	24.72	29.74	69.71	59.69	46.22
Merged-chr9-13495735-1	chr9	13495235	13496235	+	931.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64374.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.58	8.29	7.4	16.19	14.46	3.22	6.34	3.1	7.49
Merged-chr8-77112989-3	chr8	77112535	77113535	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	210527.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	3.43	9.68	8.32	11.47	20.99	3.22	12.67	13.27	21.23
Merged-chr5-118376629-3	chr5	118376139	118377139	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131412.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	9.72	10.14	0.0	14.17	7.46	9.65	11.62	7.52	3.75
Merged-chr13-100576105-3	chr13	100575607	100576607	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23389.0	NM_001360539	18260.0	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	1.72	3.69	1.85	8.77	6.06	6.43	5.28	12.38	13.74
Merged-chrX-13295015-3	chrX	13294515	13295515	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13993.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	7.44	5.53	5.55	8.1	11.66	10.45	7.39	7.07	9.37
Merged-chr14-27096949-3	chr14	27096461	27097461	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47032.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	24.6	36.86	14.8	33.74	30.79	52.25	25.35	39.8	14.99
Merged-chr19-5713697-3	chr19	5713196	5714196	+	931.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9225.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	57.21	48.38	57.35	62.07	23.79	83.59	58.09	53.94	66.82
Merged-chr8-70906358-1	chr8	70905858	70906858	+	931.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173013, intron 1 of 6)	CpG	384.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	43.48	46.08	79.55	48.58	50.85	99.67	79.21	37.14	49.96
Merged-chrX-107330060-3	chrX	107329576	107330576	+	931.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45730.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	6.29	5.07	5.55	8.77	1.87	1.61	5.28	4.42	8.74
Merged-chr10-81520231-3	chr10	81519736	81520736	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	3989.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	31.46	20.74	37.0	23.62	25.19	42.6	41.19	27.86	33.72
Merged-chr10-41937369-3	chr10	41936858	41937858	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	49919.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	17.73	10.14	14.8	24.29	10.73	14.47	20.07	11.94	6.25
Merged-chr5-117373598-3	chr5	117373085	117374085	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 4 of 8)	intron (NM_021539, intron 4 of 8)	15438.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	17.16	19.81	18.5	29.01	24.26	28.13	20.07	11.94	18.74
Merged-chr17-27534856-3	chr17	27534338	27535338	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21736.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	8.58	2.3	0.0	3.37	1.4	0.0	3.17	1.77	2.5
Merged-chr9-32040226-3	chr9	32039721	32040721	+	931.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-75915.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.58	1.84	2.77	10.12	6.06	3.22	4.22	7.52	1.25
Merged-chr9-66277170-4	chr9	66276623	66277623	+	931.775024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73327.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	28.03	28.57	18.5	66.8	34.99	31.35	51.75	40.68	23.73
Merged-chr16-92398873-3	chr16	92398311	92399311	+	931.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1267.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	104.69	99.99	68.45	204.44	171.68	176.03	119.35	112.75	69.32
Merged-chr7-120677503-3	chr7	120676982	120677982	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164580)	promoter-TSS (NM_001164580)	-138.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	26.31	42.39	47.17	50.6	38.25	23.31	34.85	42.01	41.22
Merged-chr4-59244931-3	chr4	59244430	59245430	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	136.15	114.74	96.2	101.21	75.11	96.45	160.54	196.76	93.68
Merged-chr2-11288639-3	chr2	11288150	11289150	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 15 of 17)	intron (NM_008859, intron 15 of 17)	-50839.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	5.72	5.07	3.7	8.77	3.73	1.61	7.39	3.54	0.0
Merged-chr4-133707134-3	chr4	133706659	133707659	+	931.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	9949.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	67.5	58.06	61.97	64.77	42.45	55.46	48.58	57.04	42.47
Merged-chr7-143466364-3	chr7	143465853	143466853	+	931.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5303.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	1.72	0.92	1.85	8.1	2.33	1.61	1.06	0.0	0.0
Merged-chr15-31572521-3	chr15	31572034	31573034	+	931.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181588, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3701.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	10.3	2.76	10.17	8.1	4.67	14.47	4.22	1.77	1.25
Merged-chr2-146959439-2	chr2	146958978	146959978	+	931.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033298, intron 12 of 13)	intron (NM_001033298, intron 12 of 13)	-53521.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	4.58	4.61	8.32	3.37	1.87	6.43	5.28	5.75	2.5
Merged-chr17-50121331-2	chr17	50120823	50121823	+	931.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	69174.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	9.72	12.44	7.4	13.49	22.86	11.25	44.36	48.2	38.1
Merged-chr1-134098611-3	chr1	134098115	134099115	+	931.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12627.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	210.52	265.41	184.07	296.88	264.04	221.85	211.24	283.87	161.75
Merged-chr13-37541870-3	chr13	37541394	37542394	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196549.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	9.15	5.53	16.65	18.22	5.6	6.43	44.36	30.07	12.49
Merged-chrX-89394284-1	chrX	89393784	89394784	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15405.0	NM_008821	18630.0	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	2.86	1.84	1.85	11.47	9.8	4.82	6.34	4.86	5.62
Merged-chr14-48138053-1	chr14	48137553	48138553	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	17184.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.0	4.15	11.1	11.47	9.33	16.08	3.17	0.88	1.87
Merged-chr10-60344321-3	chr10	60343823	60344823	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-2528.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	6.29	5.99	18.5	18.89	7.93	25.72	8.45	8.4	13.12
Merged-chr15-97580919-3	chr15	97580415	97581415	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124907.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	25.17	13.36	1.85	29.01	34.06	24.11	32.74	21.22	19.98
Merged-chr2-160026087-1	chr2	160025587	160026587	+	931.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040499, intron 2 of 3)	intron (NR_040499, intron 2 of 3)	9434.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	10.87	7.83	5.55	12.82	13.06	12.86	3.17	3.54	7.49
Merged-chr2-83812681-3	chr2	83812203	83813203	+	931.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175514)	promoter-TSS (NM_175514)	-25.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	1.14	1.84	1.85	6.75	2.33	1.61	3.17	2.21	5.0
Merged-chr6-106805066-3	chr6	106804549	106805549	+	931.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4962.0	NM_175357	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	2.29	6.91	0.0	4.05	4.67	4.82	2.11	3.1	1.25
Merged-chr5-34519578-3	chr5	34519063	34520063	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5584.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	33.75	23.5	28.67	23.62	23.79	40.19	28.52	24.76	27.48
Merged-chr1-171284512-3	chr1	171284010	171285010	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013919, intron 6 of 12)	intron (NM_013919, intron 6 of 12)	-3324.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	61.78	70.04	67.52	60.05	57.85	61.09	54.92	71.63	36.22
Merged-chr11-117119041-3	chr11	117118563	117119563	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	(GA)n|Simple_repeat|Simple_repeat	3891.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	149.88	119.34	113.77	173.4	99.37	135.84	147.87	169.79	93.05
Merged-chr10-41951359-3	chr10	41950849	41951849	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63910.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	12.59	13.36	21.27	22.94	18.19	21.7	14.79	16.36	16.24
Merged-chr3-84037095-3	chr3	84036550	84037550	+	931.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 2 of 34)	intron (NM_172681, intron 2 of 34)	3111.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	23.45	33.64	36.07	17.54	16.79	17.68	16.9	23.43	23.11
Merged-chr17-34313559-3	chr17	34313052	34314052	+	931.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	7685.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	40.62	20.74	10.17	13.49	7.46	8.04	34.85	26.53	14.36
Merged-chr2-30062592-4	chr2	30062089	30063089	+	931.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023871, intron 1 of 7)	intron (NM_023871, intron 1 of 7)	593.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	86.38	71.42	103.59	104.58	85.37	184.07	135.19	90.64	83.69
Merged-chr10-9722803-3	chr10	9722299	9723299	+	931.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38077.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	2.86	3.69	0.0	7.42	3.27	1.61	5.28	5.75	1.25
Merged-chr16-24202879-3	chr16	24202380	24203380	+	931.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120190.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	3.43	3.69	1.85	8.1	6.06	3.22	3.17	1.77	3.75
Merged-chr3-132116308-3	chr3	132115804	132116804	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	31012.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	33.18	41.01	27.75	48.58	48.05	55.46	50.7	50.41	33.1
Merged-chr5-115319848-3	chr5	115319346	115320346	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131932, exon 2 of 2)	non-coding (NR_131932, exon 2 of 2)	-7331.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	6.86	5.53	2.77	8.1	3.73	3.22	5.28	3.54	7.49
Merged-chr11-51289703-3	chr11	51289189	51290189	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153393)	promoter-TSS (NM_153393)	-231.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	13.16	6.91	0.0	8.77	6.53	14.47	6.34	3.98	5.0
Merged-chr7-28444155-3	chr7	28443639	28444639	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039192, intron 4 of 6)	intron (NM_001039192, intron 4 of 6)	3202.0	NM_001039192	63986.0	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	128.71	185.24	119.32	155.86	108.23	121.37	152.09	172.89	123.66
Merged-chr3-146058430-3	chr3	146057945	146058945	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 16 of 22)	intron (NM_172864, intron 16 of 22)	49591.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	6.29	3.69	0.0	4.72	1.87	1.61	2.11	2.65	0.0
Merged-chr1-85986981-3	chr1	85986501	85987501	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25946.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	33.18	25.8	32.37	35.09	21.46	27.33	72.88	84.9	36.85
Merged-chr11-20477700-3	chr11	20477203	20478203	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65550.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	16.59	19.35	16.65	25.64	27.06	59.48	53.87	31.84	31.85
Merged-chr17-64531350-3	chr17	64530876	64531876	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	24214.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	8.58	4.61	5.55	3.37	5.13	4.82	4.22	1.77	12.49
Merged-chr1-74715722-3	chr1	74715223	74716223	+	931.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024264, intron 1 of 8)	intron (NM_024264, intron 1 of 8)	2188.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	66.36	61.75	65.67	56.0	55.05	62.7	76.05	54.83	68.07
Merged-chr10-18965080-3	chr10	18964583	18965583	+	931.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46880.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.01	5.99	3.7	3.37	4.67	8.04	13.73	6.63	5.62
Merged-chr14-67876976-3	chr14	67876459	67877459	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-17214.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	28.03	25.34	14.8	34.41	21.93	26.53	29.57	22.11	31.85
Merged-chr2-165062216-3	chr2	165061736	165062736	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	6600.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	42.9	27.19	9.25	48.58	19.13	12.86	103.51	114.96	33.72
Merged-chr1-138458307-3	chr1	138457795	138458795	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161462.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.29	5.07	9.25	12.82	7.0	11.25	12.67	3.54	11.24
Merged-chr8-26980076-3	chr8	26979610	26980610	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	2774.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	51.48	47.92	60.12	37.11	27.99	63.5	67.6	39.8	34.35
Merged-chr15-13380175-1	chr15	13379675	13380675	+	931.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206500.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	9.15	7.37	6.47	13.49	13.53	1.61	6.34	11.05	3.75
Merged-chr5-65120077-3	chr5	65119563	65120563	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	-11168.0	NM_001359401	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	18.88	10.6	24.97	16.87	13.53	9.65	16.9	21.22	19.98
Merged-chr11-120784212-3	chr11	120783708	120784708	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	-4.0	NM_009053	19719.0	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	66.93	29.03	37.92	55.33	34.06	52.25	65.48	25.65	13.12
Merged-chr7-127208310-2	chr7	127207803	127208803	+	931.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347655)	promoter-TSS (NM_001347655)	165.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	76.66	83.4	127.64	72.19	48.98	97.26	105.62	78.71	91.81
Merged-chr11-5098298-3	chr11	5097777	5098777	+	931.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290491)	promoter-TSS (NM_001290491)	811.0	NM_001283062	14030.0	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	272.3	283.84	195.17	231.43	253.31	245.96	245.04	308.63	194.23
Merged-chr11-117338648-2	chr11	117338147	117339147	+	931.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	6334.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	14.3	8.75	5.55	20.92	6.06	8.04	7.39	3.1	9.37
Merged-chrX-155194264-3	chrX	155193756	155194756	+	931.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22193.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	101.25	111.97	69.37	103.91	97.97	110.12	108.79	127.34	56.21
Merged-chr11-23846166-3	chr11	23845664	23846664	+	931.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49106.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	10.87	12.44	11.1	20.92	11.66	20.09	10.56	15.48	8.12
Merged-chr3-83842649-3	chr3	83842145	83843145	+	931.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	89.24	74.65	42.55	99.18	58.31	45.01	87.66	75.61	44.34
Merged-chr7-44869207-3	chr7	44868711	44869711	+	931.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133949, intron 1 of 11)	CpG	577.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	117.27	47.0	99.89	79.62	30.79	47.42	69.71	23.43	48.71
Merged-chr12-40273499-3	chr12	40273011	40274011	+	931.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50147.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	4.58	9.22	21.27	8.77	9.33	15.27	8.45	8.84	9.99
Merged-chr2-11503268-3	chr2	11502777	11503777	+	931.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	CpG	-1187.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	22.31	11.06	5.55	27.66	27.06	9.65	25.35	20.34	8.12
Merged-chr15-96743422-3	chr15	96742922	96743922	+	931.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43694.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.58	5.53	5.55	18.22	7.0	10.45	2.11	1.77	6.25
Merged-chr8-26978726-3	chr8	26978230	26979230	+	931.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101502, exon 2 of 2)	exon (NM_001101502, exon 2 of 2)	1394.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	113.84	128.1	123.94	97.16	104.03	145.49	116.18	112.75	111.79
Merged-chr14-117714379-3	chr14	117713893	117714893	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	239454.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	9.72	6.91	3.7	6.07	3.27	6.43	10.56	14.15	6.87
Merged-chr3-9786794-3	chr3	9786294	9787294	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	46885.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	6.86	5.07	12.95	8.1	4.67	7.23	13.73	2.65	0.62
Merged-chr15-79039110-3	chr15	79038611	79039611	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013847)	TTS (NM_013847)	-2774.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	5.15	3.23	6.47	3.37	2.33	7.23	5.28	3.1	1.25
Merged-chr14-31385452-3	chr14	31384941	31385941	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	32236.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	147.02	152.98	111.92	242.9	175.87	180.85	229.19	296.25	130.53
Merged-chr3-96001220-3	chr3	96000717	96001717	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013841, intron 14 of 14)	intron (NM_013841, intron 14 of 14)	-5378.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	37.18	31.79	24.97	53.3	45.25	18.49	35.91	22.55	11.87
Merged-chr12-4188395-3	chr12	4187896	4188896	+	931.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	45569.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	37.18	29.49	43.47	49.25	38.72	65.91	38.02	36.26	11.24
Merged-chr10-111107590-3	chr10	111107084	111108084	+	931.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-57218.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	7.44	5.99	12.02	10.12	7.93	4.02	5.28	2.21	6.25
Merged-chr17-34862678-3	chr17	34862173	34863173	+	931.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142706)	promoter-TSS (NM_001142706)	-159.0	NM_008198	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	22.88	10.14	5.55	10.12	6.53	12.06	38.02	22.55	7.49
Merged-chr14-25606818-3	chr14	25606320	25607320	+	931.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	3307.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	23.45	23.5	16.65	21.59	14.46	12.86	22.18	12.82	14.99
Merged-chr3-51553198-3	chr3	51552666	51553666	+	931.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080793, intron 1 of 7)	intron (NM_080793, intron 1 of 7)	-6591.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	69.79	97.23	59.2	79.62	97.5	39.39	116.18	122.92	56.83
Merged-chr8-72712775-3	chr8	72712274	72713274	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176940, exon 19 of 19)	3' UTR (NM_176940, exon 19 of 19)	-10496.0	NM_001113248	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	16.59	11.98	22.2	11.47	11.2	25.72	23.24	14.15	5.62
Merged-chr1-138244637-3	chr1	138244109	138245109	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29129.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	70.36	56.68	36.07	64.77	31.26	54.66	72.88	57.04	56.83
Merged-chr1-58652768-3	chr1	58652327	58653327	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045007, intron 1 of 1)	intron (NR_045007, intron 1 of 1)	186.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	123.56	166.8	76.77	135.62	114.29	127.8	180.61	170.23	89.93
Merged-chr4-33030484-3	chr4	33029983	33030983	+	931.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019586)	promoter-TSS (NM_019586)	840.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	83.52	90.31	31.45	73.54	68.58	61.89	65.48	66.77	30.6
Merged-chr19-5841673-5	chr19	5841156	5842156	+	931.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003513)	TTS (NR_003513)	3822.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	110.98	88.01	59.2	97.83	54.11	62.7	66.54	76.05	43.72
Merged-chr17-78382961-5	chr17	78382447	78383447	+	931.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 7 of 9)	intron (NM_001360407, intron 7 of 9)	35205.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	49.77	37.78	24.05	47.9	33.59	27.33	25.35	30.51	18.74
Merged-chr17-71479701-1	chr17	71479201	71480201	+	931.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4358.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.72	3.69	10.17	1.35	4.2	3.22	24.29	25.65	11.87
Merged-chr17-63374387-3	chr17	63373901	63374901	+	931.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 5 of 8)	MTA_Mm|LTR|ERVL-MaLR	-61428.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	12.01	6.91	13.87	5.4	5.6	8.04	11.62	15.48	11.24
Merged-chr6-32487571-3	chr6	32487071	32488071	+	931.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-23570.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	10.3	10.14	10.17	16.19	8.4	13.66	5.28	5.31	3.75
Merged-chr18-34378586-2	chr18	34378087	34379087	+	931.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5172.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	50.34	54.83	61.05	40.48	43.39	54.66	30.63	41.12	23.73
Merged-chr9-36931807-2	chr9	36931241	36932241	+	931.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 6 of 12)	intron (NM_001029838, intron 6 of 12)	98167.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	14.3	7.37	2.77	7.42	6.53	2.41	2.11	1.33	7.49
Merged-chr5-90364741-3	chr5	90364232	90365232	+	931.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	intron (NM_198010, intron 1 of 32)	1453.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	71.51	83.4	52.72	62.07	53.65	46.62	62.31	68.98	46.22
Merged-chr9-44723109-3	chr9	44722617	44723617	+	931.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153537, intron 4 of 21)	intron (NM_153537, intron 4 of 21)	12081.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	3.43	1.84	9.25	8.1	6.53	12.86	1.06	1.77	6.25
Merged-chr13-23519097-3	chr13	23518607	23519607	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11937.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	34.9	53.45	40.7	26.31	20.53	16.88	36.97	30.07	38.1
Merged-chr5-135616254-3	chr5	135615753	135616753	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16401.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	9.15	5.53	7.4	31.71	25.19	43.4	6.34	8.4	9.99
Merged-chr2-6455300-3	chr2	6454788	6455788	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102552.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	10.3	13.82	6.47	22.94	15.39	4.02	9.51	13.27	4.37
Merged-chr9-106453714-3	chr9	106453253	106454253	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021567)	promoter-TSS (NM_021567)	-85.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	7.44	0.46	0.92	5.4	1.4	0.0	4.22	0.44	3.12
Merged-chr10-41963000-3	chr10	41962485	41963485	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	55397.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	5.15	5.07	2.77	3.37	6.06	1.61	7.39	4.86	13.12
Merged-chr1-97337103-3	chr1	97336628	97337628	+	931.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-208825.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	6.29	12.9	3.7	18.89	20.53	20.09	8.45	11.05	8.74
Merged-chr11-59392509-2	chr11	59392009	59393009	+	931.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16856.0	NM_001045521	216797.0	Mm.339586	NM_001045521	ENSMUSG00000049291	Prss38	Gm249|Mpn2	protease, serine 38	protein-coding	5.72	6.91	3.7	25.64	27.99	16.08	28.52	15.92	10.62
Merged-chr11-62559144-3	chr11	62558634	62559634	+	931.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7403.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	62.35	51.61	43.47	59.38	43.39	49.83	42.25	35.37	21.23
Merged-chr5-139668666-3	chr5	139668117	139669117	+	931.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67716.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	9.72	3.69	4.62	4.05	4.67	1.61	8.45	4.86	1.25
Merged-chrX-74426440-3	chrX	74426000	74427000	+	931.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161421, intron 1 of 10)	intron (NM_001161421, intron 1 of 10)	1888.0	NM_001136067	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	48.62	69.58	54.57	47.23	33.59	57.87	44.36	61.02	49.34
Merged-chr10-122753607-1	chr10	122753107	122754107	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	74292.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	122.99	98.15	71.22	146.41	84.44	76.36	141.53	163.6	57.46
Merged-chr9-78176657-3	chr9	78176169	78177169	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040401, exon 2 of 4)	non-coding (NR_040401, exon 2 of 4)	755.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	249.42	381.07	224.76	306.32	319.09	250.78	351.71	406.79	164.25
Merged-chr10-7681618-4	chr10	7681182	7682182	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033219)	promoter-TSS (NR_033219)	473.0	NM_010690	16798.0	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	246.56	199.06	157.24	260.44	155.81	136.64	229.19	109.22	98.68
Merged-chr2-3622415-2	chr2	3621910	3622910	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-91048.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	16.59	17.51	18.5	15.52	16.33	28.94	19.01	20.34	23.73
Merged-chr18-54993071-1	chr18	54992571	54993571	+	931.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-480.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	44.62	47.46	22.2	51.95	30.32	23.31	34.85	25.65	26.85
Merged-chr17-47522659-1	chr17	47522159	47523159	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	17608.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	46.91	51.15	61.97	48.58	48.98	44.21	25.35	29.18	13.74
Merged-chr8-116263560-1	chr8	116263060	116264060	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-241455.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	13.16	12.44	10.17	12.82	14.0	13.66	24.29	11.5	16.86
Merged-chr4-149858771-1	chr4	149858271	149859271	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84504.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.72	2.3	5.55	8.1	2.33	7.23	2.11	3.98	0.0
Merged-chr7-4510035-3	chr7	4509522	4510522	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011618, exon 8 of 14)	exon (NM_011618, exon 8 of 14)	5953.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	8.58	8.29	5.55	8.77	2.33	9.65	10.56	8.84	15.61
Merged-chr3-37771154-2	chr3	37770637	37771637	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-46777.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	12.59	11.98	15.72	9.45	7.46	3.22	10.56	7.52	3.75
Merged-chr16-36718676-3	chr16	36718191	36719191	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285791, intron 5 of 6)	intron (NM_001285791, intron 5 of 6)	24713.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	40.62	49.3	37.0	44.53	26.59	45.82	49.64	35.82	35.6
Merged-chr14-54426344-3	chr14	54425836	54426836	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026851)	promoter-TSS (NM_026851)	-573.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	46.91	61.75	35.15	63.42	45.72	40.99	64.43	71.63	29.98
Merged-chr2-31114417-3	chr2	31113930	31114930	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	-17930.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	25.17	17.51	15.72	18.89	21.93	21.7	22.18	21.67	14.99
Merged-chr9-83728672-1	chr9	83728172	83729172	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37197.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	1.14	2.3	1.85	0.67	1.87	11.25	3.17	3.54	2.5
Merged-chr16-73473763-2	chr16	73473264	73474264	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	810615.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	1.14	3.69	0.0	14.17	10.73	12.06	7.39	7.52	1.25
Merged-chr6-8778115-1	chr6	8777615	8778615	+	931.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010492, exon 1 of 14)	5' UTR (NM_010492, exon 1 of 14)	369.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.0	0.0	1.85	11.47	6.53	0.8	2.11	0.0	0.0
Merged-chr4-9647468-3	chr4	9646978	9647978	+	931.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-3761.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	34.9	15.21	22.2	37.11	16.79	23.31	76.05	74.73	26.85
Merged-chr7-83566214-3	chr7	83565692	83566692	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18739.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	6.86	7.83	8.32	9.45	5.13	5.63	25.35	26.53	14.36
Merged-chr15-94557635-3	chr15	94557153	94558153	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 6 of 11)	intron (NM_029926, intron 6 of 11)	13993.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	9.72	7.83	0.0	3.37	4.2	0.8	4.22	3.98	0.0
Merged-chr13-23430915-3	chr13	23430418	23431418	+	930.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015492)	promoter-TSS (NR_015492)	99.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	62.35	39.17	27.75	39.13	18.66	38.58	78.16	56.16	32.48
Merged-chr2-70990374-3	chr2	70989872	70990872	+	930.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 3 of 9)	intron (NM_145524, intron 3 of 9)	28002.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	70.36	76.95	48.1	71.52	56.45	46.62	60.2	60.13	34.97
Merged-chr19-37963386-5	chr19	37962804	37963804	+	930.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 19 of 53)	PB1D10|SINE|Alu	80273.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	103.54	89.85	82.32	101.88	77.44	78.77	129.91	129.55	121.16
Merged-chr4-134632456-3	chr4	134631949	134632949	+	930.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-64598.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	91.53	55.75	49.95	95.14	103.56	49.03	42.25	18.13	11.24
Merged-chr3-146658482-3	chr3	146657981	146658981	+	930.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7164.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	18.31	19.81	24.05	34.41	23.33	21.7	22.18	26.97	20.61
Merged-chr10-93180116-3	chr10	93179619	93180619	+	930.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	MTB_Mm|LTR|ERVL-MaLR	17334.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	38.33	36.4	35.15	62.75	31.72	31.35	30.63	36.7	17.49
Merged-chr7-19024886-2	chr7	19024370	19025370	+	930.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360713, intron 1 of 22)	intron (NM_001360713, intron 1 of 22)	493.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	141.87	86.17	81.4	101.21	71.38	86.01	86.61	45.1	52.46
Merged-chr14-27412895-3	chr14	27412394	27413394	+	930.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-15940.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	43.48	41.47	12.95	37.11	51.32	49.83	88.72	87.99	39.97
Merged-chr11-8664174-8	chr11	8663615	8664615	+	930.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	CpG	420.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	133.29	96.3	108.22	109.98	145.08	98.87	146.81	122.48	49.96
Merged-chr12-117378654-2	chr12	117378181	117379181	+	930.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41669.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	111.55	105.98	105.44	14.84	7.93	13.66	3.17	0.44	3.75
Merged-chr7-139220515-2	chr7	139219999	139220999	+	930.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143755, intron 4 of 8)	intron (NM_001143755, intron 4 of 8)	-7192.0	NM_001162540	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	6.29	5.53	5.55	2.7	5.13	3.22	14.79	11.94	1.25
Merged-chr8-116974413-3	chr8	116973965	116974965	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027103, intron 1 of 2)	intron (NM_027103, intron 1 of 2)	4188.0	NM_001357254	69528.0	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	46.91	51.15	32.37	58.03	38.25	73.14	45.42	41.12	43.09
Merged-chr14-13994047-1	chr14	13993547	13994547	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18444.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	22.88	16.59	14.8	6.07	6.06	7.23	4.22	2.65	14.99
Merged-chr18-69586701-3	chr18	69586183	69587183	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	240523.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	127.57	149.29	51.8	143.04	110.56	90.83	83.44	107.45	46.84
Merged-chr2-84890080-3	chr2	84889555	84890555	+	930.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3363.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	1.14	4.61	1.85	4.05	1.87	6.43	1.06	2.65	3.75
Merged-chr14-55822671-3	chr14	55822181	55823181	+	930.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	12.59	5.99	0.0	10.8	6.06	11.25	4.22	1.77	1.87
Merged-chr19-53529763-3	chr19	53529250	53530250	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085390, intron 1 of 3)	intron (NM_001085390, intron 1 of 3)	432.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	76.08	26.73	39.77	91.09	52.25	61.89	26.4	7.96	5.0
Merged-chr14-68672025-3	chr14	68671510	68672510	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16168.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	5.72	1.84	0.0	10.8	6.53	1.61	5.28	3.1	3.75
Merged-chr19-11293140-3	chr19	11292641	11293641	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 2 of 2)	intron (NR_045317, intron 2 of 2)	-9328.0	NM_183190	269063.0	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	106.4	106.44	90.65	122.12	120.36	122.18	106.67	125.13	74.94
Merged-chr7-64061351-3	chr7	64060860	64061860	+	930.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92475.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	8.58	12.9	0.0	13.49	8.86	9.65	5.28	0.44	5.0
Merged-chr13-37873665-3	chr13	37873093	37874093	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-14841.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	21.74	12.9	20.35	31.71	20.53	24.11	11.62	6.63	8.74
Merged-chr2-91272987-3	chr2	91272476	91273476	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001311144)	TTS (NM_001311144)	7861.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	22.31	9.22	12.02	16.87	12.13	12.06	32.74	41.56	9.99
Merged-chr11-71159661-3	chr11	71159158	71160158	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040696, intron 12 of 14)	CT-rich|Low_complexity|Low_complexity	-14954.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	10.3	8.75	11.1	18.89	14.93	24.92	4.22	8.84	8.74
Merged-chr7-121075951-3	chr7	121075439	121076439	+	930.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	-1409.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	124.71	180.63	130.42	153.84	192.2	173.62	179.55	157.41	93.05
Merged-chr13-22026634-3	chr13	22026179	22027179	+	930.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8964.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	42.9	57.14	26.82	35.09	20.99	22.51	29.57	16.36	11.87
Merged-chr7-135773983-3	chr7	135773491	135774491	+	930.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57612.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	5.72	3.23	12.95	6.75	4.67	0.0	2.11	1.33	1.25
Merged-chr4-105268909-3	chr4	105268411	105269411	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111564.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	17.73	21.66	10.17	30.36	8.86	15.27	38.02	21.67	12.49
Merged-chr16-90396391-3	chr16	90395898	90396898	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	10001.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	20.02	24.42	12.95	39.13	18.19	35.37	21.12	11.94	17.49
Merged-chr8-106958381-3	chr8	106957888	106958888	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	L1ME2|LINE|L1	22638.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	14.87	12.44	2.77	16.87	8.86	9.65	10.56	7.07	1.87
Merged-chr1-182520246-1	chr1	182519746	182520746	+	930.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2636.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	5.72	3.69	5.55	13.49	7.0	11.25	7.39	2.21	11.24
Merged-chr19-11107953-3	chr19	11107455	11108455	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 4 of 6)	intron (NM_027058, intron 4 of 6)	22923.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	60.07	75.11	53.65	70.85	48.52	36.17	44.36	21.22	41.22
Merged-chr3-96246679-1	chr3	96246179	96247179	+	930.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178216).2	promoter-TSS (NM_178216).2	-6.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	27.46	26.97	29.35
Merged-chr6-73059931-3	chr6	73059419	73060419	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164669, intron 61 of 76)	MTEa|LTR|ERVL-MaLR	-101171.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	9.72	5.53	0.92	6.75	7.93	2.41	13.73	10.61	9.37
Merged-chr16-91375134-3	chr16	91374632	91375632	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	ORR1C2|LTR|ERVL-MaLR	2349.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	112.69	108.75	75.85	107.95	91.9	96.45	129.91	102.58	38.1
Merged-chr7-34272670-1	chr7	34272170	34273170	+	930.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	12939.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	8.58	3.23	7.4	6.07	2.33	8.04	6.34	2.21	4.37
Merged-chr3-146158529-3	chr3	146158040	146159040	+	930.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	B4|SINE|B4	8366.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	56.06	64.51	63.82	60.72	48.05	40.19	55.98	61.02	41.84
Merged-chr16-95821185-3	chr16	95820693	95821693	+	930.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77520.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	5.72	2.3	0.0	5.4	1.87	3.22	7.39	5.31	7.49
Merged-chr6-51636364-3	chr6	51635868	51636868	+	930.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91075.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	22.31	20.27	16.65	25.64	14.0	14.47	26.4	34.93	8.74
Merged-chr10-79928277-3	chr10	79927756	79928756	+	930.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 1 of 8)	intron (NM_001288625, intron 1 of 8)	915.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	32.04	21.2	15.72	26.99	22.39	46.62	44.36	44.66	33.72
Merged-chr17-34033271-5	chr17	34032798	34033798	+	930.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205214, intron 2 of 9)	intron (NM_001205214, intron 2 of 9)	948.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	120.7	67.74	105.44	68.15	58.78	65.11	157.37	111.43	63.7
Merged-chr11-120624888-3	chr11	120624383	120625383	+	930.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105901)	promoter-TSS (NR_105901)	-7.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	30.89	25.34	65.67	33.06	28.92	56.27	35.91	34.93	50.59
Merged-chr16-4213240-3	chr16	4212726	4213726	+	930.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001025432, exon 1 of 31)	5' UTR (NM_001025432, exon 1 of 31)	178.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	77.23	54.37	70.3	78.94	33.12	40.19	100.34	47.31	44.97
Merged-chr1-165192392-3	chr1	165191913	165192913	+	930.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	2020.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	16.59	9.22	19.42	8.77	6.06	5.63	29.57	15.92	9.37
Merged-chr16-30597285-3	chr16	30596792	30597792	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2431.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	32.04	33.18	20.35	24.96	20.53	4.82	63.37	52.18	11.87
Merged-chr11-21238805-3	chr11	21238281	21239281	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139061)	promoter-TSS (NM_139061)	-251.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	243.12	232.24	268.24	202.42	132.02	149.5	321.08	236.56	185.48
Merged-chr13-12473912-3	chr13	12473408	12474408	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-12170.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	5.15	4.15	9.25	4.72	1.87	6.43	4.22	2.21	2.5
Merged-chr10-19958368-3	chr10	19957867	19958867	+	930.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	23841.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	76.66	81.1	48.1	64.77	55.05	60.28	38.02	37.58	29.35
Merged-chr18-60891400-3	chr18	60890914	60891914	+	930.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20826.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	4.58	8.29	5.55	7.42	3.27	3.22	5.28	5.75	7.49
Merged-chr2-29889113-2	chr2	29888589	29889589	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177661)	promoter-TSS (NM_001177661)	75.0	NM_001355137	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	185.92	151.6	103.59	190.27	140.89	167.99	194.34	176.42	118.04
Merged-chr11-117083635-3	chr11	117083148	117084148	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6300.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	34.9	26.26	9.25	50.6	44.78	47.42	48.58	28.74	19.36
Merged-chr17-12252344-2	chr17	12251834	12252834	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	66326.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	4.0	0.92	1.85	18.22	8.86	16.88	21.12	20.78	14.36
Merged-chr12-98735551-1	chr12	98735051	98736051	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011877)	promoter-TSS (NM_011877)	-906.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	23.45	29.95	16.65	29.69	29.86	35.37	16.9	20.34	15.61
Merged-chr2-132151152-2	chr2	132150646	132151646	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5826.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	6.29	5.99	1.85	8.1	3.73	6.43	4.22	5.31	6.87
Merged-chr10-127609722-1	chr10	127609222	127610222	+	930.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 3 of 88)	intron (NM_008512, intron 3 of 88)	11426.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	41.19	47.92	37.0	79.62	59.71	102.88	64.43	41.56	25.61
Merged-chr6-57534975-3	chr6	57534494	57535494	+	930.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	432.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	89.81	106.9	131.34	82.99	79.77	86.01	91.89	126.9	86.81
Merged-chr10-26762681-3	chr10	26762162	26763162	+	930.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9850.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	18.88	15.21	16.65	39.13	24.72	31.35	6.34	8.4	8.74
Merged-chr13-100832332-3	chr13	100831845	100832845	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022885, intron 1 of 15)	intron (NM_022885, intron 1 of 15)	1082.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	151.02	141.92	84.17	128.2	150.68	102.88	164.76	197.65	98.05
Merged-chr2-92066869-3	chr2	92066383	92067383	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42713.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	13.73	8.75	0.0	14.17	4.67	1.61	15.84	7.96	7.49
Merged-chr1-85988523-3	chr1	85988013	85989013	+	930.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27458.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	39.47	44.24	29.6	60.05	47.12	39.39	86.61	80.47	32.48
Merged-chr3-65518013-3	chr3	65517529	65518529	+	930.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10418.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	17.73	17.05	11.1	8.1	9.33	3.22	11.62	9.29	8.12
Merged-chr11-120631345-3	chr11	120630852	120631852	+	930.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	2195.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	123.56	107.36	91.57	112.68	91.9	125.39	113.01	141.49	74.32
Merged-chr2-76370167-4	chr2	76369697	76370697	+	930.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153405, exon 1 of 10)	exon (NM_153405, exon 1 of 10)	213.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	34.9	21.2	12.95	33.06	30.79	36.17	48.58	34.93	26.23
Merged-chr12-8659937-3	chr12	8659444	8660444	+	930.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-14190.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	20.59	17.05	16.65	28.34	14.46	16.88	15.84	17.24	12.49
Merged-chr14-74703999-3	chr14	74703475	74704475	+	930.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-28322.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	11.44	16.59	20.35	12.14	14.93	7.23	9.51	12.82	5.0
Merged-chr1-184732074-4	chr1	184731516	184732516	+	930.34375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 1 of 4)	exon (NM_008250, exon 1 of 4)	477.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	279.16	398.12	326.51	229.4	290.17	295.79	283.06	309.52	260.43
Merged-chr16-22517763-3	chr16	22517246	22518246	+	930.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_130988)	TTS (NR_130988)	6266.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	17.73	10.6	7.4	10.8	6.06	12.86	3.17	3.54	6.25
Merged-chr9-95682024-2	chr9	95681541	95682541	+	930.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 5 of 8)	MTB_Mm|LTR|ERVL-MaLR	44413.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	154.45	230.85	141.52	176.78	185.2	202.55	343.26	515.12	188.61
Merged-chr13-52581051-1	chr13	52580551	52581551	+	930.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	33.18	36.4	35.15	25.64	27.06	36.97	34.85	18.57	36.85
Merged-chr2-30679170-3	chr2	30678658	30679658	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	42.33	47.92	43.47	47.23	48.98	70.73	23.24	22.99	16.86
Merged-chr4-133205041-3	chr4	133204515	133205515	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7521.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	38.33	28.11	45.32	64.1	30.32	29.74	31.69	14.15	19.36
Merged-chr5-24686372-3	chr5	24685884	24686884	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	intron (NM_001305264, intron 1 of 14)	569.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	239.12	285.69	261.76	362.32	311.63	281.33	381.28	441.73	208.59
Merged-chr16-31759557-3	chr16	31759051	31760051	+	930.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	5201.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	60.64	55.75	35.15	62.07	29.86	37.78	46.47	25.2	19.36
Merged-chr10-34235579-3	chr10	34235040	34236040	+	930.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27989.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	44.62	45.16	19.42	56.0	25.19	26.53	32.74	29.18	20.61
Merged-chr16-77128881-3	chr16	77128393	77129393	+	930.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114824.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	6.86	0.46	16.65	4.72	2.8	4.82	0.0	3.54	5.0
Merged-chr2-124703565-3	chr2	124703070	124704070	+	930.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	49989.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	46.34	41.01	18.5	26.31	19.13	30.54	49.64	38.91	48.09
Merged-chr13-9182041-3	chr13	9181554	9182554	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88173.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	18.88	14.75	1.85	8.77	6.53	7.23	13.73	11.94	6.25
Merged-chr17-72834738-3	chr17	72834234	72835234	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	68.07	87.09	70.3	72.87	58.31	108.51	123.57	102.58	81.19
Merged-chr17-7897961-3	chr17	7897475	7898475	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28025.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	40.62	35.94	15.72	34.41	35.45	16.08	25.35	30.07	13.12
Merged-chr3-65943503-3	chr3	65943016	65944016	+	930.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	14733.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	11.44	15.21	16.65	20.92	16.33	14.47	27.46	13.27	16.24
Merged-chr15-89175618-3	chr15	89175128	89176128	+	930.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	-1677.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	57.78	52.07	52.72	48.58	27.99	47.42	73.93	59.69	38.72
Merged-chr11-35178714-1	chr11	35178214	35179214	+	930.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 3 of 35)	intron (NM_011412, intron 3 of 35)	57258.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	2.29	0.92	0.0	0.0	1.4	2.41	7.39	4.86	8.74
Merged-chr4-45489841-2	chr4	45489333	45490333	+	930.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	40995.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	20.02	10.14	3.7	11.47	10.73	8.04	13.73	5.75	6.25
Merged-chr15-36708585-3	chr15	36708091	36709091	+	930.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82341.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.72	4.15	3.7	3.37	1.87	1.61	7.39	2.65	5.0
Merged-chr10-93090430-2	chr10	93089943	93090943	+	930.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8847.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	8.01	5.99	9.25	8.1	3.27	3.22	8.45	2.65	2.5
Merged-chr12-35336517-1	chr12	35336017	35337017	+	930.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-141620.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	5.72	4.61	1.85	4.72	4.2	3.22	1.06	2.21	0.62
Merged-chr7-116625597-3	chr7	116625071	116626071	+	930.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	121202.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	12.01	11.06	8.32	18.22	7.93	5.63	20.07	11.05	12.49
Merged-chr17-37050635-3	chr17	37050146	37051146	+	930.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019439, intron 5 of 22)	CpG	4680.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	47.48	53.45	27.75	12.82	10.73	12.86	3.17	3.1	3.75
Merged-chr11-60538876-4	chr11	60538304	60539304	+	930.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172943, exon 1 of 4)	exon (NM_172943, exon 1 of 4)	1121.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	306.05	297.67	257.14	331.96	263.58	190.5	250.32	245.84	168.0
Merged-chr5-135106871-3	chr5	135106402	135107402	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152880)	promoter-TSS (NR_152880)	11.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	15.45	1.84	3.7	5.4	2.33	5.63	4.22	2.21	0.0
Merged-chr5-31451473-3	chr5	31450971	31451971	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172993)	promoter-TSS (NM_172993)	-965.0	NM_172993	269639.0	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	68.07	90.77	92.5	75.57	71.38	115.75	49.64	73.84	60.58
Merged-chr10-88390275-3	chr10	88389769	88390769	+	930.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	MLTR32C_MM|LTR|ERVK	10857.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	46.91	33.18	29.6	33.74	25.66	18.49	54.92	41.12	18.74
Merged-chr19-11263730-3	chr19	11263225	11264225	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007641, intron 1 of 6)	intron (NM_007641, intron 1 of 6)	2426.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	39.47	36.86	33.3	31.71	25.66	31.35	53.87	47.31	49.34
Merged-chr3-15590894-3	chr3	15590394	15591394	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15829.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	18.31	15.21	2.77	16.19	13.06	9.65	22.18	21.67	13.12
Merged-chr11-61794976-3	chr11	61794495	61795495	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013881, intron 20 of 26)	intron (NM_013881, intron 20 of 26)	-32907.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	37.76	75.57	80.47	60.05	44.78	48.23	43.3	46.43	33.72
Merged-chr8-69189089-3	chr8	69188576	69189576	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-19970.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	33.18	32.25	12.95	78.94	84.9	58.68	79.21	67.21	28.73
Merged-chr1-53848783-3	chr1	53848294	53849294	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106149)	promoter-TSS (NR_106149)	-630.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	76.66	103.22	63.82	91.76	78.84	90.83	68.65	68.09	64.95
Merged-chr10-67490034-3	chr10	67489521	67490521	+	930.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47848.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	19.45	8.29	8.32	20.24	4.2	13.66	9.51	9.29	12.49
Merged-chr5-139382044-2	chr5	139381525	139382525	+	930.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	1386.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	141.3	125.33	95.27	170.03	196.87	167.99	162.65	189.69	109.92
Merged-chr6-4054626-2	chr6	4054123	4055123	+	930.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7039.0	NR_131108	78034.0	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	Gm43986	RIKEN cDNA 4930528H21 gene	ncRNA	2.86	3.23	3.7	7.42	2.8	0.0	13.73	4.42	5.62
Merged-chr9-116241522-2	chr9	116241019	116242019	+	930.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52339.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	17.16	14.75	10.17	16.19	7.46	17.68	10.56	1.33	0.0
Merged-chr15-57995847-3	chr15	57995397	57996397	+	930.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173862, intron 3 of 3)	B4A|SINE|B4	9994.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	22.31	11.52	17.57	11.47	14.93	14.47	23.24	19.46	15.61
Merged-chr11-22928969-3	chr11	22928433	22929433	+	930.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	-43072.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	21.74	25.34	9.25	12.14	16.79	17.68	14.79	11.94	13.74
Merged-chr4-150110540-3	chr4	150110048	150111048	+	930.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-8796.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	26.31	12.9	12.95	22.27	16.79	14.47	100.34	77.82	62.45
Merged-chr5-3928269-5	chr5	3927710	3928710	+	930.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194462)	promoter-TSS (NM_194462)	24.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	87.52	39.63	43.47	92.44	49.92	41.8	82.38	40.68	18.74
Merged-chr13-37338026-3	chr13	37337506	37338506	+	930.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7339.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	125.28	123.49	102.67	106.61	91.9	106.1	104.56	139.28	83.69
Merged-chr1-95647060-3	chr1	95646554	95647554	+	930.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	20540.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	52.63	52.53	6.47	76.92	51.78	32.96	35.91	44.22	16.86
Merged-chr3-27193619-1	chr3	27193119	27194119	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	B1F|SINE|Alu	10615.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	394.72	454.33	217.36	468.93	541.15	334.38	362.27	523.08	226.08
Merged-chr7-30562681-1	chr7	30562181	30563181	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170760)	promoter-TSS (NM_170760)	503.0	NM_025498	66340.0	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	160.18	146.07	187.77	132.92	155.35	160.76	191.17	218.43	108.67
Merged-chr4-45436889-1	chr4	45436389	45437389	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-28123.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.86	2.76	1.85	6.07	2.33	1.61	4.22	1.77	9.99
Merged-chr10-15171354-1	chr10	15170854	15171854	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	411065.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	6.29	7.83	5.55	11.47	8.4	16.88	4.22	2.65	6.25
Merged-chr5-129995235-1	chr5	129994735	129995735	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357025, intron 8 of 10)	intron (NM_001357025, intron 8 of 10)	7814.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	13.73	7.83	7.4	22.94	20.06	12.86	11.62	2.21	1.25
Merged-chr16-78560293-3	chr16	78559800	78560800	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040569)	promoter-TSS (NR_040569)	-16.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	27.46	19.35	11.1	24.29	21.93	20.9	38.02	45.1	15.61
Merged-chr19-5117637-3	chr19	5117110	5118110	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045528, intron 1 of 15)	CpG	798.0	NR_045528	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	18.88	13.36	7.4	12.82	8.86	27.33	11.62	9.73	13.74
Merged-chr2-28547972-3	chr2	28547478	28548478	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145836, intron 11 of 17)	intron (NM_001145836, intron 11 of 17)	14514.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	14.87	7.83	1.85	5.4	1.87	4.82	6.34	1.77	2.5
Merged-chr12-81675759-1	chr12	81675259	81676259	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	44510.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	2.29	9.22	13.87	4.05	2.8	1.61	2.11	0.88	5.62
Merged-chr17-86671408-1	chr17	86670908	86671908	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82456.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.72	1.84	0.0	6.75	4.2	1.61	2.11	3.54	5.0
Merged-chr13-76129011-1	chr13	76128511	76129511	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081352, intron 17 of 43)	intron (NM_001081352, intron 17 of 43)	30277.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	12.59	5.99	3.7	10.12	10.26	10.45	7.39	2.65	8.12
Merged-chr18-61093896-3	chr18	61093400	61094400	+	930.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11672.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	56.63	52.99	49.95	70.85	34.06	63.5	62.31	61.46	68.7
Merged-chr17-37542493-1	chr17	37541993	37542993	+	930.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	12536.0	NM_001005485	545205.0	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	7.44	9.22	12.95	4.72	3.27	4.82	9.51	4.86	7.49
Merged-chr1-135399660-3	chr1	135399164	135400164	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-24601.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	15.45	22.58	15.72	12.14	5.6	16.88	12.67	18.57	12.49
Merged-chr4-16102238-3	chr4	16101744	16102744	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61399.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	40.04	36.86	25.9	61.4	46.18	66.71	62.31	41.12	34.35
Merged-chr10-84390503-3	chr10	84390017	84391017	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49954.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	58.92	66.81	40.7	58.03	44.78	28.94	64.43	53.94	39.97
Merged-chr10-19526523-3	chr10	19526024	19527024	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31881.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	16.59	13.82	15.72	22.94	18.66	20.9	29.57	7.07	5.62
Merged-chr8-71596087-3	chr8	71595584	71596584	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025396, exon 5 of 5)	exon (NM_025396, exon 5 of 5)	-1562.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	10.87	3.23	3.7	6.75	4.2	9.65	3.17	4.86	4.37
Merged-chr18-75839531-3	chr18	75839070	75840070	+	929.944458	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	19392.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	3.43	1.84	1.85	4.72	2.8	5.63	20.07	23.43	6.25
Merged-chr10-80963828-3	chr10	80963320	80964320	+	929.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33729.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	32.61	24.42	14.8	53.3	38.25	20.9	24.29	13.71	5.0
Merged-chr11-116869858-3	chr11	116869377	116870377	+	929.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15877.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	57.21	54.83	39.77	70.85	64.38	51.44	64.43	65.0	35.6
Merged-chr11-74485644-2	chr11	74485149	74486149	+	929.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	104509.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	11.44	8.29	9.25	5.4	4.67	4.82	2.11	3.54	3.75
Merged-chr6-116265796-3	chr6	116265287	116266287	+	929.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-745.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	32.61	38.71	10.17	39.81	21.46	14.47	41.19	44.66	19.98
Merged-chr10-61122511-3	chr10	61121994	61122994	+	929.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 3 of 14)	intron (NM_009163, intron 3 of 14)	25190.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	84.66	117.04	87.87	81.64	68.11	78.77	125.69	142.82	77.44
Merged-chr18-75599943-3	chr18	75599445	75600445	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 6 of 11)	RMER1C|Other|Other	85300.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	7.44	6.45	4.62	10.12	5.6	4.02	5.28	7.07	11.24
Merged-chr15-103182350-3	chr15	103181844	103182844	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-19060.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	3.43	1.84	1.85	1.35	1.4	3.22	5.28	0.0	3.12
Merged-chr1-93305841-3	chr1	93305339	93306339	+	929.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178051)	promoter-TSS (NM_178051)	40.0	NM_001310756	69821.0	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	21.74	16.59	9.25	12.14	19.59	11.25	29.57	18.57	11.87
Merged-chr4-150508883-2	chr4	150508369	150509369	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085492, exon 9 of 23)	exon (NM_001085492, exon 9 of 23)	143305.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	84.09	71.88	75.85	84.34	84.9	69.13	54.92	83.57	60.58
Merged-chr13-90932900-2	chr13	90932410	90933410	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9788.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	19.45	16.13	12.02	10.8	7.46	20.9	2.11	1.33	1.87
Merged-chr11-19027361-2	chr11	19026852	19027852	+	929.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-8383.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	6.86	1.84	3.7	6.07	3.27	4.82	6.34	2.21	0.0
Merged-chr15-59156468-1	chr15	59155968	59156968	+	929.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-74442.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	3.43	3.69	4.62	8.1	1.87	4.82	2.11	3.1	2.5
Merged-chr6-28867759-3	chr6	28867250	28868250	+	929.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-36003.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	9.15	9.22	17.57	14.17	8.86	8.04	16.9	14.59	7.49
Merged-chr17-43230044-3	chr17	43229551	43230551	+	929.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40296.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	5.15	5.07	2.77	5.4	1.4	0.0	8.45	2.65	3.75
Merged-chr2-160252116-3	chr2	160251623	160252623	+	929.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	75371.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	46.91	42.85	49.02	43.18	45.25	39.39	71.82	61.02	29.35
Merged-chr13-18808475-4	chr13	18808025	18809025	+	929.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	91233.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	54.92	78.33	52.72	69.5	47.58	41.8	61.26	71.19	56.83
Merged-chr4-150473061-3	chr4	150472570	150473570	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	179104.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	150.45	137.31	57.35	170.7	152.55	85.2	64.43	80.92	31.85
Merged-chr11-103178323-3	chr11	103177806	103178806	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	7168.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	20.59	6.91	11.1	22.94	8.86	16.08	10.56	7.52	6.25
Merged-chr6-97420244-3	chr6	97419750	97420750	+	929.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 4 of 23)	intron (NM_145148, intron 4 of 23)	39036.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	42.33	47.92	31.45	41.83	42.45	52.25	30.63	29.63	28.1
Merged-chr4-117167442-3	chr4	117166930	117167930	+	929.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290662, intron 10 of 19)	intron (NM_001290662, intron 10 of 19)	-11298.0	NM_009098	20116.0	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	10.3	5.99	10.17	8.77	2.33	10.45	7.39	8.4	1.25
Merged-chr8-71288778-2	chr8	71288281	71289281	+	929.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	16067.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	161.32	171.87	109.14	176.1	155.35	146.29	141.53	200.3	118.04
Merged-chr4-150341352-2	chr4	150340846	150341846	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	59430.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	43.48	38.71	29.6	60.05	79.31	72.34	33.8	51.73	18.11
Merged-chr17-34047637-3	chr17	34047122	34048122	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317722, intron 7 of 64)	intron (NM_001317722, intron 7 of 64)	8484.0	NM_001317722	12815.0	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	76.08	42.39	51.8	46.56	41.52	62.7	65.48	73.84	55.58
Merged-chr4-46560545-1	chr4	46560045	46561045	+	929.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	5895.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	19.45	21.66	13.87	21.59	13.06	26.53	59.15	51.29	47.46
Merged-chr10-95850697-3	chr10	95850205	95851205	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89958.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	8.01	6.91	1.85	9.45	4.67	0.8	3.17	6.63	10.62
Merged-chr14-25470532-4	chr14	25470103	25471103	+	929.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	11418.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	210.52	147.45	79.55	232.78	180.07	129.41	142.59	143.26	79.94
Merged-chr12-112673791-3	chr12	112673302	112674302	+	929.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	CpG	474.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	116.13	83.86	124.87	160.58	108.7	107.71	189.06	128.23	45.59
Merged-chr6-42397430-3	chr6	42396922	42397922	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2816.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	82.38	101.37	52.72	89.74	61.58	47.42	54.92	59.69	37.47
Merged-chr9-47707940-3	chr9	47707436	47708436	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	110272.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	32.04	48.38	29.6	41.83	43.39	49.83	41.19	30.07	33.1
Merged-chr19-55820410-3	chr19	55819900	55820900	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-74921.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	39.47	29.95	31.45	58.03	27.99	32.15	46.47	30.51	15.61
Merged-chrX-106149701-3	chrX	106149236	106150236	+	929.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	6461.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	43.48	45.62	25.9	60.72	55.51	66.71	41.19	31.39	29.98
Merged-chrX-144318245-6	chrX	144317767	144318767	+	929.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037145, intron 1 of 26)	CpG	301.0	NM_026247	67574.0	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031	asparagine-linked glycosylation 13	protein-coding	78.94	73.73	49.95	97.16	75.11	65.11	74.99	61.46	43.72
Merged-chr11-102925171-3	chr11	102924670	102925670	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197959)	promoter-TSS (NM_197959)	-46.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	15.45	8.75	12.02	20.92	13.06	11.25	33.8	30.51	18.74
Merged-chr8-111237490-3	chr8	111236991	111237991	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	B3|SINE|B2	21711.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	36.04	38.25	42.55	50.6	39.19	69.13	51.75	65.88	34.35
Merged-chr18-5820457-1	chr18	5819957	5820957	+	929.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	227810.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	20.02	12.44	24.97	15.52	9.8	24.11	38.02	34.05	17.49
Merged-chr18-57352531-3	chr18	57352056	57353056	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2177.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	5.15	4.15	1.85	6.07	8.4	0.0	5.28	3.54	1.25
Merged-chr9-41158261-3	chr9	41157733	41158733	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176860)	promoter-TSS (NM_176860)	-171.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	41.76	47.46	72.15	43.18	34.99	66.71	81.33	72.96	70.57
Merged-chr3-51182694-3	chr3	51182180	51183180	+	929.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41767.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	11.44	14.28	13.87	14.84	19.59	10.45	26.4	23.43	25.61
Merged-chr4-139212374-2	chr4	139211869	139212869	+	929.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	MIRb|SINE|MIR	18258.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	71.51	60.36	60.12	41.16	23.33	49.03	115.12	99.93	36.22
Merged-chr9-123563759-3	chr9	123563260	123564260	+	929.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357485, intron 7 of 19)	intron (NM_001357485, intron 7 of 19)	34007.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	12.01	26.73	37.92	23.62	14.93	28.13	16.9	19.01	29.98
Merged-chr5-72329662-3	chr5	72329172	72330172	+	929.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016869, exon 16 of 22)	exon (NM_016869, exon 16 of 22)	126329.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.86	8.75	15.72	10.8	10.26	9.65	23.24	12.38	9.37
Merged-chr1-171038565-3	chr1	171038054	171039054	+	929.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19628.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	185.92	174.18	75.85	149.11	116.16	69.13	134.14	187.92	69.95
Merged-chr19-46014720-3	chr19	46014212	46015212	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11234.0	NM_176785	20170.0	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	HPS6, biogenesis of lysosomal organelles complex 2 subunit 3	protein-coding	2.86	1.38	0.0	12.14	3.27	1.61	4.22	2.21	3.75
Merged-chr11-46077905-6	chr11	46077434	46078434	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 3 of 22)	intron (NM_001291890, intron 3 of 22)	21950.0	NM_001291891	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	28.6	22.58	8.32	40.48	15.39	3.22	53.87	49.52	34.97
Merged-chr2-48690797-3	chr2	48690302	48691302	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123307.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	9.15	2.3	3.7	4.72	4.2	2.41	2.11	0.88	5.0
Merged-chr1-181852628-3	chr1	181852116	181853116	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10215.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	61.21	74.65	56.42	42.51	42.45	33.76	48.58	49.08	28.1
Merged-chr10-25268690-3	chr10	25268202	25269202	+	929.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 4 of 7)	intron (NM_018747, intron 4 of 7)	30461.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	8.01	9.68	0.0	12.14	10.26	13.66	13.73	12.82	7.49
Merged-chrX-70385881-3	chrX	70385371	70386371	+	929.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026787)	promoter-TSS (NM_026787)	-42.0	NM_026787	68618.0	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	60.07	83.4	53.65	56.0	41.99	61.89	87.66	66.77	51.21
Merged-chr13-30987886-3	chr13	30987383	30988383	+	929.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13836.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.29	9.22	9.25	20.92	11.2	10.45	21.12	11.05	6.25
Merged-chr4-102511090-3	chr4	102510587	102511587	+	929.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-58973.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	34.9	47.46	33.3	14.84	12.13	15.27	20.07	17.24	9.37
Merged-chr6-3344519-3	chr6	3344026	3345026	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55045.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	15.45	9.22	11.1	14.84	2.8	12.86	66.54	52.62	36.22
Merged-chr17-83903615-3	chr17	83903100	83904100	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49182.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	13.16	5.07	5.55	8.77	1.4	8.04	2.11	3.1	7.49
Merged-chr3-10258543-1	chr3	10258043	10259043	+	929.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-4291.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.0	3.69	1.85	4.05	3.27	1.61	1.06	0.88	0.0
Merged-chr9-106308382-3	chr9	106307882	106308882	+	929.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	27321.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	125.28	117.96	113.77	149.11	94.23	136.64	104.56	132.65	105.55
Merged-chr6-122653262-3	chr6	122652761	122653761	+	929.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26837.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	106.4	111.05	71.22	113.35	75.57	121.37	133.08	139.72	96.8
Merged-chr13-74494505-3	chr13	74493995	74494995	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146231)	promoter-TSS (NM_146231)	-545.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	42.33	52.07	69.37	49.25	48.98	55.46	47.53	71.19	48.09
Merged-chr15-3583456-3	chr15	3582921	3583921	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010284)	promoter-TSS (NM_010284)	-69.0	NM_010284	14600.0	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	2.86	2.76	3.7	2.02	0.93	0.0	2.11	0.44	3.75
Merged-chr8-23207920-3	chr8	23207408	23208408	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018743, intron 1 of 12)	CpG	545.0	NM_018743	102247.0	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	54.35	34.1	49.02	64.1	34.06	55.46	59.15	20.34	39.97
Merged-chr4-155529492-3	chr4	155528999	155529999	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160016, intron 3 of 11)	B1_Mur4|SINE|Alu	-32882.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	10.87	21.66	11.1	13.49	12.13	26.53	23.24	11.94	9.37
Merged-chr2-61512249-3	chr2	61511755	61512755	+	929.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-66331.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.86	5.99	3.7	4.05	5.13	3.22	8.45	2.65	6.25
Merged-chr14-121427308-3	chr14	121426726	121427726	+	929.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47996.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.58	7.37	0.0	5.4	5.6	6.43	9.51	11.05	5.62
Merged-chr2-157838426-3	chr2	157837928	157838928	+	929.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-76225.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	52.63	38.25	48.1	40.48	29.39	46.62	11.62	17.24	21.23
Merged-chr9-95640134-3	chr9	95639647	95640647	+	929.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	2519.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	75.51	78.79	81.4	77.59	92.37	113.33	158.43	175.1	84.31
Merged-chr2-164444594-3	chr2	164444076	164445076	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1388.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	6.86	9.22	14.8	18.89	11.66	12.86	3.17	9.73	6.25
Merged-chr7-10495444-3	chr7	10494953	10495953	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009577)	promoter-TSS (NM_009577)	-72.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	3.43	5.99	3.7	5.4	2.8	4.82	6.34	0.88	8.12
Merged-chr7-43667777-3	chr7	43667270	43668270	+	929.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mm|LTR|ERV1	-4261.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	173.9	138.7	78.62	161.93	95.63	90.83	167.93	165.81	81.81
Merged-chr5-30850480-3	chr5	30849979	30850979	+	929.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11328.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	86.38	101.37	98.05	93.11	83.04	104.49	80.27	90.2	55.58
Merged-chr11-69949008-3	chr11	69948501	69949501	+	929.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-804.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	12.59	5.53	3.7	10.8	2.8	4.82	10.56	3.1	5.0
Merged-chr8-10835278-3	chr8	10834823	10835823	+	929.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47131.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	62.35	62.67	40.7	87.04	34.52	33.76	24.29	28.3	6.87
Merged-chr18-67278631-3	chr18	67278117	67279117	+	929.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10606.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	4.0	1.84	0.92	4.72	6.06	1.61	2.11	2.21	0.0
Merged-chr19-42144246-2	chr19	42143761	42144761	+	929.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3128.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	29.75	15.67	11.1	23.62	7.0	12.86	5.28	2.65	9.37
Merged-chr9-118664731-2	chr9	118664229	118665229	+	929.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-46963.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	162.46	164.96	116.54	175.43	108.7	137.45	157.37	195.88	113.04
Merged-chr9-118659999-3	chr9	118659494	118660494	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 6 of 27)	MIRb|SINE|MIR	-51698.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	76.08	89.39	74.0	112.0	75.57	126.19	124.63	115.85	79.32
Merged-chr3-138493908-3	chr3	138493421	138494421	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4539.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	13.16	7.83	8.32	9.45	9.8	11.25	9.51	6.19	6.25
Merged-chr6-145291556-3	chr6	145291059	145292059	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41007.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	36.61	29.95	33.3	33.74	50.38	56.27	36.97	48.2	24.98
Merged-chr11-21729256-1	chr11	21728756	21729756	+	929.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145425, intron 12 of 17)	intron (NM_145425, intron 12 of 17)	156975.0	NM_145425	216560.0	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	4.0	3.69	7.4	2.02	3.73	7.23	5.28	7.07	8.74
Merged-chr7-43538735-3	chr7	43538241	43539241	+	929.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5570.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	9.15	9.68	2.77	7.42	4.67	13.66	9.51	5.75	1.25
Merged-chr13-35380777-2	chr13	35380286	35381286	+	929.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-168738.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	3.43	11.52	1.85	8.1	12.13	16.08	2.11	1.33	1.25
Merged-chr16-30013250-3	chr16	30012747	30013747	+	929.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	4580.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	12.59	6.91	18.5	20.92	9.8	9.65	16.9	8.84	7.49
Merged-chr15-102673738-2	chr15	102673239	102674239	+	929.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1873.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	5.15	10.6	5.55	10.12	16.33	15.27	26.4	31.39	9.37
Merged-chr19-4962164-4	chr19	4961714	4962714	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025553)	promoter-TSS (NM_025553)	-92.0	NM_025553	66419.0	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	54.92	48.84	60.12	69.5	83.04	56.27	98.23	68.54	34.97
Merged-chr16-31933833-5	chr16	31933294	31934294	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172822)	promoter-TSS (NM_172822)	-57.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	275.16	298.13	239.56	261.79	249.58	214.61	283.06	301.56	196.1
Merged-chr4-132334955-3	chr4	132334460	132335460	+	929.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133878, intron 6 of 9)	intron (NM_133878, intron 6 of 9)	-5422.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	83.52	42.39	35.15	14.84	7.0	6.43	124.63	99.93	42.47
Merged-chr14-30612735-3	chr14	30612267	30613267	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-2457.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	15.45	21.2	12.95	23.62	23.79	45.82	35.91	36.26	13.12
Merged-chr5-135909138-3	chr5	135908622	135909622	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018871, exon 2 of 2)	3' UTR (NM_018871, exon 2 of 2)	21203.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	159.03	88.01	37.92	186.9	180.07	172.81	107.73	109.66	42.47
Merged-chr18-44759250-3	chr18	44758734	44759734	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085373, exon 2 of 19)	exon (NM_001085373, exon 2 of 19)	52948.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	38.33	49.76	59.2	70.17	88.17	73.14	126.74	143.7	75.57
Merged-chr9-123940261-3	chr9	123939752	123940752	+	929.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28440.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	63.5	42.39	34.22	52.63	27.99	52.25	32.74	25.65	20.61
Merged-chr19-5800286-5	chr19	5799734	5800734	+	929.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	2438.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	221.96	168.65	84.17	172.05	122.23	61.89	193.28	168.02	92.43
Merged-chr7-35167167-3	chr7	35166679	35167679	+	929.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-19206.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	13.73	11.06	20.35	22.27	8.4	23.31	17.96	8.4	17.49
Merged-chr1-181210711-3	chr1	181210216	181211216	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145514, intron 1 of 13)	intron (NM_145514, intron 1 of 13)	1262.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	162.46	191.69	146.14	134.27	116.63	114.94	171.1	175.54	111.17
Merged-chr17-23193657-3	chr17	23193150	23194150	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009555)	promoter-TSS (NM_009555)	-398.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	18.88	27.19	14.8	14.84	21.93	22.51	16.9	9.73	8.12
Merged-chr17-8856636-3	chr17	8856140	8857140	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	6655.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.29	8.75	14.8	17.54	17.73	13.66	32.74	22.55	17.49
Merged-chr8-124150167-1	chr8	124149667	124150667	+	929.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81227.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.15	0.46	0.0	2.7	2.8	1.61	13.73	18.57	6.25
Merged-chr10-91271375-3	chr10	91270867	91271867	+	929.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50748.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	11.44	11.06	11.1	15.52	15.86	16.88	21.12	26.09	3.75
Merged-chr9-124122226-3	chr9	124121707	124122707	+	929.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009917, intron 1 of 1)	intron (NM_009917, intron 1 of 1)	664.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	209.94	270.94	150.77	203.76	221.13	118.16	276.72	323.67	143.02
Merged-chr3-95433633-3	chr3	95433114	95434114	+	929.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009709)	promoter-TSS (NM_009709)	-776.0	NM_009709	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	479.95	492.12	184.99	429.12	552.81	231.49	405.58	587.2	211.09
Merged-chr11-96766745-2	chr11	96766256	96767256	+	929.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163389)	TTS (NM_001163389)	10799.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	99.54	116.58	94.35	124.15	85.37	106.1	96.11	82.24	49.34
Merged-chr1-175693562-3	chr1	175693049	175694049	+	929.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-917.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	26.31	21.2	8.32	26.31	19.13	30.54	21.12	20.78	16.86
Merged-chr12-105937300-3	chr12	105936794	105937794	+	929.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72969.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.72	2.3	0.92	1.35	1.87	8.04	2.11	2.21	0.62
Merged-chr10-40349869-3	chr10	40349365	40350365	+	929.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	CpG	557.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	82.38	74.19	92.5	76.24	49.45	67.52	80.27	92.86	53.08
Merged-chr8-18912419-2	chr8	18911915	18912915	+	929.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38456.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	14.87	16.59	18.5	9.45	12.6	6.43	4.22	1.77	1.87
Merged-chr5-99342632-3	chr5	99342127	99343127	+	929.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	(CAAAAA)n|Simple_repeat|Simple_repeat	-89700.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	76.08	86.63	60.12	51.28	31.26	70.73	59.15	76.05	28.73
Merged-chr14-79394725-3	chr14	79394231	79395231	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3041.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	1.72	5.53	0.92	1.35	1.4	4.82	10.56	7.96	1.25
Merged-chr13-9878117-3	chr13	9877623	9878623	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033269, exon 5 of 5)	exon (NM_033269, exon 5 of 5)	-112802.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	95.53	68.2	55.5	58.03	50.38	74.75	100.34	93.74	62.45
Merged-chr10-111031673-3	chr10	111031172	111032172	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21606.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	16.59	26.26	22.2	20.24	18.66	16.88	41.19	24.32	6.25
Merged-chr2-164861006-3	chr2	164860516	164861516	+	929.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3308.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	89.81	101.83	70.3	114.03	81.17	122.18	95.06	135.75	95.55
Merged-chr10-43042954-3	chr10	43042453	43043453	+	929.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	LTR40A1|LTR|ERVL	-51791.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	14.3	18.43	3.7	16.87	14.0	28.13	23.24	29.63	19.36
Merged-chr8-122941227-3	chr8	122940728	122941728	+	929.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	RMER19C|LTR|ERVK	92854.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	113.84	111.97	65.67	87.71	69.51	36.17	50.7	65.44	39.35
Merged-chr10-88333677-3	chr10	88333106	88334106	+	929.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	23469.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	98.97	126.72	90.65	114.03	85.84	103.69	167.93	160.51	76.82
Merged-chr10-80688053-3	chr10	80687544	80688544	+	929.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 3 of 3)	B3|SINE|B2	-11751.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	11.44	10.14	0.0	6.75	3.27	4.82	1.06	2.21	6.25
Merged-chr2-102163303-1	chr2	102162803	102163803	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	23157.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.86	1.38	3.7	4.72	3.73	0.0	0.0	2.21	6.25
Merged-chr9-62970508-3	chr9	62970011	62971011	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	10368.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	198.5	182.93	78.62	170.7	118.96	72.34	152.09	199.42	58.71
Merged-chr18-49633973-1	chr18	49633473	49634473	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110684.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.29	3.69	5.55	2.02	6.53	3.22	4.22	4.42	4.37
Merged-chr17-34238858-1	chr17	34238358	34239358	+	929.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010389)	promoter-TSS (NM_010389)	-47.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	15.45	6.45	12.02	5.4	1.87	4.02	22.18	16.36	17.49
Merged-chr4-138083307-3	chr4	138082817	138083817	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355700, intron 2 of 30)	intron (NM_001355700, intron 2 of 30)	55201.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	77.8	43.77	37.0	31.71	17.73	28.94	26.4	36.26	16.24
Merged-chr13-35665677-3	chr13	35665176	35666176	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009881, intron 1 of 9)	MIR3|SINE|MIR	5814.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	4.0	9.68	1.85	14.84	3.73	8.04	6.34	2.65	0.0
Merged-chr7-136321539-2	chr7	136321040	136322040	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27875.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	13.16	23.5	18.5	24.96	25.19	34.56	36.97	40.68	19.98
Merged-chr15-86215675-1	chr15	86215175	86216175	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	intron (NM_145476, intron 1 of 12)	1216.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	80.09	74.19	61.97	80.97	48.98	91.63	61.26	64.11	33.1
Merged-chr1-93575436-1	chr1	93574936	93575936	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	60291.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	5.15	13.82	6.47	9.45	12.13	4.02	12.67	9.73	8.74
Merged-chr17-34635873-3	chr17	34635365	34636365	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6179.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	32.04	28.57	18.5	37.78	25.19	20.9	63.37	60.58	34.35
Merged-chr16-4847256-1	chr16	4846756	4847756	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	11840.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	14.3	9.68	12.95	13.49	11.66	11.25	20.07	15.03	14.99
Merged-chr15-81511948-1	chr15	81511448	81512448	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45632.0	NM_019712	56438.0	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	90.38	97.69	72.15	73.54	69.04	87.61	142.59	164.49	75.57
Merged-chr8-116268068-1	chr8	116267568	116268568	+	929.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236947.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	14.87	11.98	11.1	2.02	6.53	15.27	24.29	32.28	12.49
Merged-chr15-12376885-2	chr15	12376403	12377403	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	55407.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	21.74	30.87	13.87	33.06	22.86	46.62	20.07	21.22	11.24
Merged-chr18-39572317-1	chr18	39571817	39572817	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85072.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.58	3.69	9.25	7.42	4.67	8.04	4.22	4.86	8.74
Merged-chr16-24578665-3	chr16	24578152	24579152	+	929.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	49338.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	18.88	15.21	13.87	22.94	10.73	12.06	10.56	3.98	7.49
Merged-chr10-81542045-1	chr10	81541545	81542545	+	929.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010301, intron 1 of 6)	intron (NM_010301, intron 1 of 6)	3001.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	24.03	13.36	13.87	14.17	23.79	29.74	19.01	17.24	28.1
Merged-chr15-98089547-3	chr15	98089046	98090046	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144851, intron 1 of 17)	intron (NM_144851, intron 1 of 17)	-3043.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	80.09	72.8	52.72	52.63	59.71	72.34	83.44	90.64	71.2
Merged-chr19-32715364-3	chr19	32714872	32715872	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-3074.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	6.86	5.53	5.55	2.02	3.73	8.04	6.34	4.42	5.0
Merged-chr10-41674490-3	chr10	41674002	41675002	+	928.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 8 of 47)	B4A|SINE|B4	41961.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	4.0	1.84	0.0	2.7	2.33	4.02	5.28	4.86	1.25
Merged-chr6-39372925-3	chr6	39372419	39373419	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361617, exon 2 of 17)	5' UTR (NM_001361617, exon 2 of 17)	4516.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	28.03	33.64	35.15	31.71	17.73	30.54	33.8	16.36	16.24
Merged-chr3-136368780-3	chr3	136368303	136369303	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42737.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	14.3	10.6	12.95	12.14	10.26	9.65	15.84	7.07	8.12
Merged-chr16-3723489-3	chr16	3722991	3723991	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5367.0	NM_001161791	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	5.72	6.91	3.7	31.71	20.53	26.53	55.98	20.78	32.48
Merged-chr3-37140342-3	chr3	37139841	37140841	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-14387.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	10.3	23.96	15.72	20.24	14.46	35.37	11.62	15.92	14.36
Merged-chr3-58122885-3	chr3	58122380	58123380	+	928.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40927.0	NR_040538	67850.0	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	1.14	2.3	1.85	2.7	2.8	1.61	2.11	4.86	2.5
Merged-chr16-65549132-3	chr16	65548641	65549641	+	928.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026879, intron 2 of 5)	intron (NM_026879, intron 2 of 5)	13556.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	14.3	27.19	37.0	26.99	21.93	20.09	31.69	26.53	22.48
Merged-chr2-159900127-3	chr2	159899628	159900628	+	928.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	15.45	27.65	4.62	14.84	18.19	24.11	16.9	18.57	16.86
Merged-chr15-101316031-3	chr15	101315529	101316529	+	928.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22817.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	8.01	5.07	1.85	11.47	4.2	4.82	9.51	0.88	2.5
Merged-chr5-29843002-2	chr5	29842495	29843495	+	928.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107059.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	22.88	14.75	19.42	12.82	13.53	15.27	20.07	19.9	13.12
Merged-chr9-120577730-3	chr9	120577253	120578253	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_073359, exon 1 of 1)	non-coding (NR_073359, exon 1 of 1)	422.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	288.32	211.96	141.52	273.26	267.78	204.16	235.53	239.65	111.79
Merged-chrX-139552307-1	chrX	139551807	139552807	+	928.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175326, intron 13 of 13)	L1M4|LINE|L1	-11033.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	1.72	5.53	1.85	8.1	3.27	6.43	2.11	5.75	5.0
Merged-chr7-73557980-2	chr7	73557463	73558463	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037569, intron 1 of 4)	CpG	432.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	305.48	394.43	313.56	338.03	308.36	290.97	360.16	297.58	253.56
Merged-chr17-10848961-3	chr17	10848459	10849459	+	928.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	8600.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	35.47	41.93	27.75	24.29	26.12	46.62	22.18	19.01	31.23
Merged-chr2-105399160-7	chr2	105398767	105399767	+	928.7976070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	52.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	49.2	45.16	39.77	45.88	30.32	26.53	42.25	30.51	13.12
Merged-chr7-19227412-3	chr7	19226909	19227909	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-980.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	191.07	242.37	147.07	174.75	198.27	145.49	178.5	215.34	126.15
Merged-chr3-95996142-3	chr3	95995646	95996646	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023320)	promoter-TSS (NM_023320)	-307.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	83.52	59.9	62.9	97.16	60.65	67.52	78.16	61.02	45.59
Merged-chr2-84999684-3	chr2	84999201	85000201	+	928.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145526, intron 10 of 11)	intron (NM_145526, intron 10 of 11)	11486.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	5.72	5.53	3.7	8.1	3.73	8.04	3.17	3.1	2.5
Merged-chr19-36349206-5	chr19	36348680	36349680	+	928.771423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29887.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	45.76	33.64	22.2	51.95	44.32	21.7	49.64	23.88	6.25
Merged-chr2-45654869-2	chr2	45654371	45655371	+	928.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41734.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	7.44	5.53	0.0	8.1	0.93	3.22	3.17	7.96	8.74
Merged-chr9-71485529-3	chr9	71485000	71486000	+	928.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164793)	promoter-TSS (NM_001164793)	483.0	NM_178602	28015.0	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	227.11	291.68	196.09	205.79	233.25	219.43	236.59	150.78	119.28
Merged-chr2-154300715-3	chr2	154300234	154301234	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-6510.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	2.86	1.84	6.47	3.37	2.8	3.22	5.28	3.98	1.25
Merged-chr4-86632640-3	chr4	86632140	86633140	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20585.0	NM_173400	230376.0	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	3.43	3.23	0.92	4.05	3.73	0.0	7.39	3.1	9.99
Merged-chr2-120661961-3	chr2	120661448	120662448	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	52353.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	44.62	38.25	46.25	51.95	39.65	32.96	60.2	61.46	34.97
Merged-chr5-66041491-3	chr5	66041000	66042000	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 3 of 6)	Lx9|LINE|L1	-37215.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	9.15	6.91	18.5	12.14	8.4	9.65	9.51	7.52	12.49
Merged-chr10-69320933-3	chr10	69320442	69321442	+	928.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31970.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	44.05	31.33	24.05	23.62	24.26	30.54	58.09	45.99	23.73
Merged-chr10-59735527-4	chr10	59734980	59735980	+	928.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 3 of 11)	intron (NM_001359267, intron 3 of 11)	32917.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	57.21	49.76	30.52	63.42	58.78	65.11	49.64	48.2	31.23
Merged-chr2-84426631-3	chr2	84426063	84427063	+	928.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	90.38	139.16	52.72	93.79	101.23	65.11	87.66	125.13	73.07
Merged-chr10-20774034-3	chr10	20773496	20774496	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-48918.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	122.42	128.1	75.85	160.58	113.83	61.09	130.97	177.31	61.2
Merged-chr6-136794412-1	chr6	136793912	136794912	+	928.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10019.0	NM_175652	320332.0	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	1.72	1.38	0.0	0.0	0.93	0.0	5.28	0.0	0.0
Merged-chr2-22811013-3	chr2	22810512	22811512	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	36685.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	19.45	25.8	19.42	47.23	39.19	43.4	36.97	24.76	39.35
Merged-chr19-5806121-3	chr19	5805622	5806622	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	159.6	158.51	124.87	221.31	125.02	139.06	145.75	183.5	84.94
Merged-chr11-48788817-3	chr11	48788330	48789330	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11530.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	106.4	91.24	108.22	97.16	71.38	64.3	168.99	129.11	77.44
Merged-chr15-27715525-3	chr15	27715046	27716046	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34004.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	8.58	4.61	1.85	11.47	10.26	8.04	12.67	7.07	8.74
Merged-chr3-126612943-3	chr3	126612446	126613446	+	928.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	Lx5c|LINE|L1	15995.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	80.66	118.42	64.75	85.01	75.57	73.14	133.08	133.53	58.08
Merged-chr3-27656951-2	chr3	27656441	27657441	+	928.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	53511.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	13.16	6.91	5.55	12.14	10.26	12.86	19.01	9.29	9.99
Merged-chr7-19300667-3	chr7	19300163	19301163	+	928.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9382.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	40.04	51.15	15.72	38.46	53.65	31.35	44.36	48.2	19.98
Merged-chr2-5034778-3	chr2	5034280	5035280	+	928.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 8 of 13)	intron (NM_001356487, intron 8 of 13)	-21989.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	89.24	90.77	65.67	78.27	49.45	58.68	144.7	187.92	81.81
Merged-chr17-56883882-3	chr17	56883389	56884389	+	928.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 10 of 13)	intron (NM_030141, intron 10 of 13)	8256.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	16.59	7.83	1.85	15.52	8.4	13.66	23.24	27.86	8.12
Merged-chr18-79284182-3	chr18	79283661	79284661	+	928.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174770.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	13.73	14.28	14.8	16.87	9.33	15.27	14.79	10.61	11.24
Merged-chr3-9034692-3	chr3	9034205	9035205	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27259.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	48.05	50.23	49.95	84.34	91.9	82.79	158.43	230.37	93.68
Merged-chr2-132096020-3	chr2	132095521	132096521	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	Lx8|LINE|L1	49087.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	63.5	45.16	29.6	54.65	33.12	38.58	30.63	30.51	19.98
Merged-chr16-44765788-3	chr16	44765292	44766292	+	928.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	56.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	69.22	96.76	57.35	57.35	54.11	84.4	71.82	76.49	46.84
Merged-chr6-37601271-3	chr6	37600761	37601761	+	928.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71088.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	21.74	15.67	7.4	6.07	12.13	5.63	17.96	6.63	9.99
Merged-chr17-74454107-3	chr17	74453613	74454613	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4995.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	106.4	89.39	61.97	98.51	64.84	67.52	81.33	65.88	48.71
Merged-chr3-61416685-3	chr3	61416197	61417197	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52190.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	176.19	176.94	120.24	230.08	181.94	158.35	166.88	242.75	108.04
Merged-chr16-94556439-3	chr16	94555944	94556944	+	928.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13762.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	11.44	7.83	10.17	12.82	6.53	12.86	17.96	15.92	14.36
Merged-chr4-134117183-2	chr4	134116703	134117703	+	928.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	11550.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	5.72	6.45	3.7	1.35	4.2	6.43	51.75	46.87	41.22
Merged-chr6-85029877-1	chr6	85029377	85030377	+	928.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	39636.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	35.47	35.94	7.4	60.72	36.39	49.83	44.36	25.65	12.49
Merged-chr1-59496104-3	chr1	59495599	59496599	+	928.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13952.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	18.31	15.67	15.72	15.52	12.13	11.25	20.07	17.24	16.86
Merged-chr7-90029600-8	chr7	90029188	90030188	+	928.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	529.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	207.66	246.52	193.32	267.86	236.99	196.12	284.11	335.6	165.5
Merged-chr12-40536294-4	chr12	40535742	40536742	+	928.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	90189.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	50.34	48.38	52.72	50.6	27.52	48.23	49.64	48.2	41.84
Merged-chr10-17408023-3	chr10	17407506	17408506	+	928.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-312224.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	7.44	11.06	6.47	6.07	5.13	14.47	6.34	5.75	7.49
Merged-chr6-125333020-3	chr6	125332519	125333519	+	928.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 3 of 11)	intron (NM_011324, intron 3 of 11)	11679.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	128.14	117.5	82.32	88.39	67.18	94.04	96.11	114.08	88.06
Merged-chr7-116524731-3	chr7	116524226	116525226	+	928.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360375, intron 5 of 14)	intron (NM_001360375, intron 5 of 14)	20357.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	14.87	15.67	14.8	14.17	16.79	24.11	13.73	17.24	12.49
Merged-chr2-120652054-2	chr2	120651522	120652522	+	928.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42427.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	70.93	44.24	34.22	67.47	36.85	41.8	256.65	263.09	112.42
Merged-chr12-104066487-3	chr12	104065968	104066968	+	928.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-11491.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	9.72	10.14	16.65	2.7	7.0	1.61	15.84	11.05	9.99
Merged-chr5-21210616-3	chr5	21210132	21211132	+	928.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	(CA)n|Simple_repeat|Simple_repeat	24365.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	21.17	29.95	49.95	23.62	23.33	36.17	15.84	11.05	17.49
Merged-chr18-23987064-3	chr18	23986568	23987568	+	928.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2566.0	NM_011755	22694.0	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	28.6	20.74	12.95	11.47	7.0	13.66	16.9	8.4	8.12
Merged-chr8-117303790-3	chr8	117303296	117304296	+	928.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-45374.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	21.74	11.06	20.35	34.41	12.13	28.13	27.46	19.46	9.37
Merged-chr15-63494729-2	chr15	63494231	63495231	+	928.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15123.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	12.01	15.21	15.72	10.12	9.33	9.65	1.06	2.21	2.5
Merged-chr3-79228574-2	chr3	79228138	79229138	+	928.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	15719.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	8.58	8.75	12.02	10.8	5.6	4.02	16.9	22.55	23.11
Merged-chr7-90140425-2	chr7	90139917	90140917	+	928.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	10204.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	35.47	52.07	44.4	37.11	56.91	46.62	39.08	53.06	34.97
Merged-chr18-60803093-3	chr18	60802587	60803587	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010545)	promoter-TSS (NM_010545)	-762.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	264.86	195.37	197.94	73.54	44.32	42.6	152.09	186.59	69.32
Merged-chr5-97345940-3	chr5	97345426	97346426	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46404.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	13.73	16.13	21.27	16.19	9.8	16.88	9.51	11.5	11.24
Merged-chr6-125103293-3	chr6	125102771	125103771	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346610, intron 10 of 38)	intron (NM_001346610, intron 10 of 38)	6247.0	NR_106012	102466272.0		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	23.45	14.75	36.07	24.96	14.0	26.53	13.73	6.19	12.49
Merged-chr17-34931839-1	chr17	34931339	34932339	+	928.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010893, intron 1 of 5)	intron (NM_010893, intron 1 of 5)	586.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	334.08	306.42	213.66	310.37	303.23	200.14	209.12	304.21	166.75
Merged-chr2-71866787-1	chr2	71866287	71867287	+	928.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 3 of 3).2	intron (NR_039557, intron 3 of 3).2	-6437.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	13.73	11.06	8.32	16.19	15.39	10.45	39.08	51.29	28.1
Merged-chr1-9907270-3	chr1	9906774	9907774	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1364.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	25.74	8.75	5.55	16.87	16.79	14.47	12.67	11.05	3.75
Merged-chr6-106794240-3	chr6	106793753	106794753	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175357, exon 4 of 11)	exon (NM_175357, exon 4 of 11)	5834.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	191.07	211.5	86.02	210.51	192.2	130.21	239.75	289.18	127.4
Merged-chrX-52784130-3	chrX	52783647	52784647	+	928.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7053.0	NM_001034059	434778.0	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.57	7.37	14.8	4.05	2.8	8.04	6.34	3.1	2.5
Merged-chr13-55318719-5	chr13	55318210	55319210	+	928.320007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008739)	TTS (NM_008739)	3270.0	NM_009000	19336.0	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	17.16	39.63	26.82	29.69	15.86	24.11	17.96	22.11	37.47
Merged-chr12-8924517-2	chr12	8924019	8925019	+	928.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	intron (NM_008640, intron 1 of 6)	3212.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	93.24	71.88	54.57	79.62	50.85	69.13	114.07	111.43	69.32
Merged-chr16-10489288-3	chr16	10488790	10489790	+	928.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-491.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	49.2	38.71	51.8	26.31	27.99	46.62	60.2	57.92	51.84
Merged-chr2-19580742-3	chr2	19580234	19581234	+	928.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26824.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	56.06	50.69	32.37	12.82	6.06	6.43	13.73	14.59	16.86
Merged-chr7-55852583-3	chr7	55852083	55853083	+	928.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	MTD|LTR|ERVL-MaLR	10512.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	118.99	87.55	43.47	80.97	32.66	49.03	68.65	60.58	58.08
Merged-chr18-26015355-3	chr18	26014836	26015836	+	928.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261179.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.0	2.76	0.0	2.02	3.73	3.22	3.17	2.65	2.5
Merged-chr18-68692151-2	chr18	68691666	68692666	+	928.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-47234.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	13.73	9.22	3.7	3.37	4.2	4.82	5.28	8.4	9.37
Merged-chr5-118636969-3	chr5	118636493	118637493	+	928.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	76274.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	14.3	12.9	9.25	12.14	7.93	8.84	13.73	11.05	18.11
Merged-chr11-21452779-2	chr11	21452286	21453286	+	928.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	58394.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	10.87	9.22	0.92	14.84	8.86	19.29	19.01	6.19	9.99
Merged-chr16-36752170-2	chr16	36751671	36752671	+	928.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021301, intron 21 of 21)	intron (NM_021301, intron 21 of 21)	32791.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	32.04	31.33	20.35	22.94	21.93	34.56	29.57	30.07	31.23
Merged-chr1-191166445-3	chr1	191165974	191166974	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1657.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	11.44	3.23	3.7	7.42	7.46	3.22	12.67	7.52	6.25
Merged-chr11-50050557-3	chr11	50050050	50051050	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-19152.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	57.21	47.92	24.05	86.36	40.59	24.92	64.43	62.79	14.36
Merged-chr10-67182788-3	chr10	67182289	67183289	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-2961.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	41.19	74.19	17.57	45.88	46.65	30.54	32.74	49.08	23.11
Merged-chr13-100848853-3	chr13	100848358	100849358	+	928.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15431.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	18.31	11.06	9.25	40.48	19.13	31.35	46.47	48.2	29.35
Merged-chr9-62913704-4	chr9	62913236	62914236	+	928.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 6 of 13)	MIRc|SINE|MIR	-51712.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	42.33	39.17	31.45	39.81	29.39	34.56	45.42	36.26	28.1
Merged-chr8-115585809-3	chr8	115585314	115586314	+	928.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121080.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	28.03	25.8	25.9	36.43	32.19	49.83	19.01	16.36	19.98
Merged-chr4-74305901-3	chr4	74305396	74306396	+	928.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 4 of 20)	URR1B|DNA|hAT-Charlie	54017.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	22.31	21.2	37.0	24.29	28.46	26.53	29.57	24.32	24.36
Merged-chr1-12983348-3	chr1	12982843	12983843	+	928.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172841, intron 1 of 8)	intron (NM_172841, intron 1 of 8)	7792.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	10.87	9.68	0.0	4.05	2.33	9.65	12.67	3.1	0.0
Merged-chr4-114973410-3	chr4	114972955	114973955	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	13773.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	32.61	41.93	38.85	22.27	26.59	37.78	48.58	31.39	40.59
Merged-chr11-58096319-3	chr11	58095812	58096812	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7658.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	37.18	42.85	42.55	39.81	23.33	20.9	11.62	9.73	2.5
Merged-chr10-51527084-4	chr10	51526552	51527552	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	36154.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	310.63	426.23	234.01	356.25	382.54	266.05	404.52	499.21	221.71
Merged-chr1-152774764-3	chr1	152774272	152775272	+	928.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026369, exon 4 of 4)	3' UTR (NM_026369, exon 4 of 4)	8230.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	22.88	23.04	16.65	26.31	17.26	20.9	19.01	22.55	29.98
Merged-chr11-76562326-2	chr11	76561810	76562810	+	928.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	9074.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.58	2.76	5.55	8.77	5.6	6.43	3.17	7.07	3.75
Merged-chr10-80807433-3	chr10	80806912	80807912	+	928.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007445, exon 5 of 5)	exon (NM_007445, exon 5 of 5)	2164.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	24.03	3.69	6.47	17.54	4.2	6.43	8.45	5.75	9.37
Merged-chr9-44920949-7	chr9	44920435	44921435	+	928.119019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013795)	promoter-TSS (NM_013795)	-193.0	NM_013795	27425.0	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	161.89	140.54	97.12	126.17	130.16	138.25	182.72	182.17	114.91
Merged-chr7-80069518-5	chr7	80069027	80070027	+	928.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045695, exon 2 of 3)	non-coding (NR_045695, exon 2 of 3)	5730.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	56.63	38.25	30.52	57.35	26.59	32.15	49.64	22.11	22.48
Merged-chr8-126588819-3	chr8	126588324	126589324	+	928.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164598, exon 2 of 2)	3' UTR (NM_001164598, exon 2 of 2)	4612.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	105.26	99.99	74.0	151.14	89.57	77.97	118.29	87.11	55.58
Merged-chr12-102691235-3	chr12	102690745	102691745	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-6225.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	93.24	94.0	161.87	72.19	59.25	65.11	121.46	89.76	67.45
Merged-chr12-91776496-3	chr12	91776004	91777004	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	9932.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	21.74	11.52	11.1	18.89	11.66	5.63	30.63	14.59	6.87
Merged-chr11-58978095-3	chr11	58977612	58978612	+	928.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	19.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	83.52	80.64	92.5	107.28	129.22	155.93	172.16	201.63	98.68
Merged-chr14-8214860-3	chr14	8214364	8215364	+	928.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305936, exon 1 of 3)	5' UTR (NM_001305936, exon 1 of 3)	362.0	NM_001305936	71393.0	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	276.87	348.81	229.39	380.54	494.03	262.84	435.15	524.41	197.35
Merged-chr3-52017927-3	chr3	52017436	52018436	+	928.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	87070.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	9.15	11.06	1.85	16.19	20.99	11.25	20.07	12.82	14.99
Merged-chr3-84228693-3	chr3	84228201	84229201	+	928.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-7824.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	36.04	53.45	7.4	42.51	40.12	20.09	23.24	21.67	12.49
Merged-chr9-21926939-3	chr9	21926434	21927434	+	928.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164614)	promoter-TSS (NM_001164614)	354.0	NM_001253869	235043.0	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	115.55	119.8	76.77	160.58	188.47	140.66	133.08	168.02	53.71
Merged-chr5-138195686-3	chr5	138195178	138196178	+	928.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177878)	TTS (NM_177878)	1364.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	86.95	92.16	66.6	114.03	80.71	79.58	120.41	131.32	61.2
Merged-chr4-9642218-3	chr4	9641716	9642716	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	1501.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	33.75	32.72	12.95	51.95	22.39	24.11	102.45	119.39	31.85
Merged-chr3-8246427-3	chr3	8245918	8246918	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	216680.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	12.59	31.33	33.3	64.77	76.97	116.55	20.07	18.13	43.72
Merged-chr7-16255594-3	chr7	16255110	16256110	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	B3A|SINE|B2	3728.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	98.39	111.05	90.65	99.86	95.17	107.71	78.16	93.74	50.59
Merged-chr4-89486125-2	chr4	89485616	89486616	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-175084.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	6.29	7.37	5.55	6.07	9.8	19.29	5.28	2.21	8.12
Merged-chr11-54758185-3	chr11	54757682	54758682	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	MER57C2|LTR|ERV1	29521.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	68.07	68.66	38.85	61.4	53.18	50.64	52.81	52.62	33.1
Merged-chr17-50025873-1	chr17	50025373	50026373	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	ORR1G|LTR|ERVL-MaLR	164624.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	99.54	64.05	49.95	107.95	78.37	104.49	103.51	81.36	54.33
Merged-chr14-52307445-3	chr14	52306946	52307946	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2322.0	NM_019721	56335.0	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	6.86	8.75	3.7	12.14	8.86	22.51	16.9	7.07	15.61
Merged-chr10-19522410-1	chr10	19521910	19522910	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27767.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	32.61	47.0	38.85	39.13	38.25	57.87	53.87	31.84	56.83
Merged-chr3-19460840-2	chr3	19460342	19461342	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	12.01	13.82	7.4	4.72	3.27	1.61	3.17	3.1	1.87
Merged-chrX-159835460-1	chrX	159834960	159835960	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 5 of 16)	MIR|SINE|MIR	-5008.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	21.74	11.52	15.72	3.37	2.33	1.61	23.24	22.99	9.99
Merged-chr12-3237913-1	chr12	3237413	3238413	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 3 of 6)	intron (NR_015551, intron 3 of 6)	2122.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	24.6	22.12	29.6	25.64	10.73	37.78	40.14	35.82	13.12
Merged-chr9-40785933-1	chr9	40785433	40786433	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15340.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	15.45	24.88	18.5	14.84	11.2	26.53	25.35	24.32	16.86
Merged-chr9-61514636-1	chr9	61514136	61515136	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	142270.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	6.29	4.61	5.55	6.07	2.8	4.82	6.34	0.88	0.0
Merged-chr10-80668757-1	chr10	80668257	80669257	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 10 of 13)	intron (NM_021462, intron 10 of 13)	7536.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	2.86	1.38	1.85	4.72	1.87	7.23	4.22	0.88	5.0
Merged-chr3-126436348-2	chr3	126435881	126436881	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	72529.0	NM_173451	271970.0	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	1.14	3.23	0.0	6.75	3.73	8.04	10.56	15.92	18.74
Merged-chr5-90906703-2	chr5	90906187	90907187	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009140)	TTS (NM_009140)	2788.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	9.72	6.45	9.25	7.42	12.6	3.22	8.45	5.75	3.75
Merged-chr11-80163654-1	chr11	80163154	80164154	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 5 of 10)	intron (NM_172133, intron 5 of 10)	9492.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	30.89	29.49	53.65	30.36	24.26	49.83	29.57	40.68	38.1
Merged-chr17-71616759-3	chr17	71616249	71617249	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175639, intron 1 of 17)	CpG	534.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	215.66	181.09	132.27	188.25	167.01	137.45	214.41	212.68	114.91
Merged-chr18-60797159-1	chr18	60796659	60797659	+	928.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6690.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	2.86	2.76	5.55	3.37	0.93	2.41	9.51	7.07	4.37
Merged-chr12-4162968-1	chr12	4162468	4163468	+	928.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	28815.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	24.03	26.26	29.6	24.29	31.26	41.8	21.12	11.05	21.23
Merged-chr11-60726856-2	chr11	60726366	60727366	+	928.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022009, intron 1 of 29)	CpG	397.0	NM_022009	14248.0	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	202.51	150.22	129.49	201.74	186.6	143.88	170.05	149.45	83.69
Merged-chr1-58797538-3	chr1	58797029	58798029	+	927.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009812, intron 1 of 8)	intron (NM_009812, intron 1 of 8)	2155.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	50.91	53.45	57.35	80.29	74.64	86.81	50.7	41.56	29.98
Merged-chr10-57786074-3	chr10	57785543	57786543	+	927.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	1120.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	115.55	161.74	80.47	137.64	167.48	173.62	102.45	164.49	100.55
Merged-chr5-124531188-5	chr5	124530628	124531628	+	927.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021430, exon 1 of 7)	5' UTR (NM_021430, exon 1 of 7)	263.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	178.48	159.89	188.69	159.91	129.69	139.86	188.0	170.23	66.82
Merged-chr12-119238648-4	chr12	119238134	119239134	+	927.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177290)	promoter-TSS (NM_177290)	-358.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	6.29	3.23	0.0	7.42	3.27	0.0	3.17	0.88	6.25
Merged-chr10-52418761-3	chr10	52418376	52419376	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	1329.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	122.42	116.12	76.77	165.98	159.08	140.66	141.53	110.1	84.31
Merged-chr17-73927222-3	chr17	73926722	73927722	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	22974.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	70.36	61.75	58.27	80.97	66.24	46.62	60.2	56.16	36.22
Merged-chr14-25487196-3	chr14	25486699	25487699	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	28014.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	25.17	16.59	16.65	32.39	18.66	27.33	19.01	10.17	12.49
Merged-chr16-95945596-3	chr16	95945091	95946091	+	927.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16514.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.29	1.84	0.0	11.47	0.93	4.82	4.22	5.31	5.0
Merged-chr18-69400806-3	chr18	69400317	69401317	+	927.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	54657.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	42.9	49.3	18.5	80.97	95.17	60.28	80.27	115.41	45.59
Merged-chr10-80321159-3	chr10	80320690	80321690	+	927.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025521)	promoter-TSS (NM_025521)	-642.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	40.04	40.09	56.42	24.29	30.32	30.54	65.48	67.65	35.6
Merged-chr5-99242622-3	chr5	99242142	99243142	+	927.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 2 of 13)	intron (NM_181318, intron 2 of 13)	10285.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	79.52	74.65	47.17	78.27	71.38	63.5	88.72	84.9	54.33
Merged-chr2-160237929-3	chr2	160237431	160238431	+	927.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	89563.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	54.92	56.68	31.45	66.12	48.05	49.83	59.15	66.33	35.6
Merged-chr9-74935443-2	chr9	74934928	74935928	+	927.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17452.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	24.6	20.27	12.95	24.29	27.52	14.47	29.57	16.36	18.74
Merged-chr11-114909167-2	chr11	114908663	114909663	+	927.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19122.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	140.15	116.58	86.95	204.44	129.69	172.01	222.86	178.64	91.81
Merged-chr1-152809102-3	chr1	152808619	152809619	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	RSINE1|SINE|B4	8966.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	208.23	221.64	148.92	174.08	167.48	153.52	209.12	293.16	163.63
Merged-chr15-58046776-3	chr15	58046256	58047256	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001042438)	TTS (NM_001042438)	-12462.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	8.01	13.36	3.7	20.92	11.66	8.04	34.85	17.24	13.74
Merged-chr15-84986757-3	chr15	84986265	84987265	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	1206.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	89.24	66.35	55.5	74.22	79.31	68.32	86.61	80.92	46.22
Merged-chr10-80665149-3	chr10	80664645	80665645	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021462)	TTS (NM_021462)	-8074.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	49.77	31.79	46.25	68.82	39.19	59.48	47.53	59.69	43.72
Merged-chr15-67788283-1	chr15	67787783	67788783	+	927.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	470573.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	1.14	1.84	1.85	17.54	7.0	19.29	4.22	3.54	3.12
Merged-chr7-98082617-3	chr7	98082121	98083121	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 18 of 48)	intron (NM_008663, intron 18 of 48)	26627.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	45.76	27.19	34.22	36.43	22.86	38.58	22.18	15.03	12.49
Merged-chr5-125440753-3	chr5	125440245	125441245	+	927.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-823.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	10.87	6.45	3.7	12.82	4.2	8.04	7.39	4.42	5.0
Merged-chr1-132133644-3	chr1	132133128	132134128	+	927.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	L2|LINE|L2	6057.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	7.44	8.75	3.7	10.8	4.2	12.06	7.39	4.42	0.0
Merged-chr3-87334850-3	chr3	87334345	87335345	+	927.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23036.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	206.51	149.29	142.44	224.68	131.09	192.11	188.0	198.98	131.15
Merged-chr15-98153101-2	chr15	98152596	98153596	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-7394.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	9.72	12.44	3.7	10.12	6.06	15.27	14.79	6.63	6.25
Merged-chr7-127091763-1	chr7	127091263	127092263	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178901, intron 1 of 1)	intron (NM_178901, intron 1 of 1)	327.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	8.58	1.84	10.17	66.8	34.06	45.01	1.06	4.86	3.75
Merged-chr13-44416167-1	chr13	44415667	44416667	+	927.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23560.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	86.95	126.72	110.07	94.46	115.69	112.53	130.97	122.48	34.35
Merged-chr19-40587190-3	chr19	40586691	40587691	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153554, intron 1 of 18)	intron (NM_153554, intron 1 of 18)	1272.0	NM_019698	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	49.77	34.56	37.92	20.92	13.06	16.88	84.49	75.17	18.11
Merged-chr2-27699691-3	chr2	27699153	27700153	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-9639.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	58.35	42.39	60.12	58.03	44.78	50.64	50.7	45.54	46.84
Merged-chr14-22813501-3	chr14	22813000	22814000	+	927.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-270702.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	5.72	7.37	12.02	14.84	9.33	14.47	5.28	8.84	3.12
Merged-chr8-83572605-2	chr8	83572106	83573106	+	927.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025843)	TTS (NM_025843)	5848.0	NM_025843	66916.0	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	22.31	5.53	24.97	22.27	14.0	12.06	13.73	8.84	10.62
Merged-chr11-115279942-2	chr11	115279445	115280445	+	927.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2976.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	15.45	17.97	20.35	2.02	2.8	4.82	29.57	24.32	29.98
Merged-chr7-43660882-3	chr7	43660388	43661388	+	927.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031181)	promoter-TSS (NM_031181)	-727.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	53.77	73.73	57.35	51.95	42.45	49.03	76.05	70.75	84.31
Merged-chr9-35546922-3	chr9	35546419	35547419	+	927.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013932, exon 9 of 12)	exon (NM_013932, exon 9 of 12)	11551.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	5.15	5.99	8.32	8.1	3.27	8.04	4.22	7.07	8.12
Merged-chr2-3327547-3	chr2	3327046	3328046	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290370, exon 12 of 12)	3' UTR (NM_001290370, exon 12 of 12)	5082.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	14.87	8.29	0.0	6.07	5.6	4.82	1.06	7.52	7.49
Merged-chr3-152568858-1	chr3	152568358	152569358	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-98055.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	15.45	3.23	6.47	22.27	15.39	16.08	15.84	7.96	9.99
Merged-chr4-126967916-1	chr4	126967416	126968416	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001357201)	promoter-TSS (NM_001357201)	7.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	53.77	35.48	60.12	67.47	28.92	59.48	70.76	42.89	39.35
Merged-chr19-11807443-1	chr19	11806943	11807943	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	11960.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	25.17	35.02	29.6	34.41	27.52	34.56	29.57	24.76	26.85
Merged-chr18-61083221-3	chr18	61082764	61083764	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146268, exon 23 of 23)	exon (NM_001146268, exon 23 of 23)	-22308.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	14.3	9.22	6.47	10.12	4.67	9.65	23.24	15.92	17.49
Merged-chr12-69503823-3	chr12	69503325	69504325	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-28275.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	20.59	17.51	24.05	28.34	20.99	19.29	24.29	11.5	12.49
Merged-chr5-122547487-3	chr5	122547000	122548000	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45275.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	32.04	38.25	41.62	58.03	43.85	49.03	12.67	14.59	5.62
Merged-chr6-42692281-3	chr6	42691822	42692822	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355769, intron 1 of 8)	intron (NM_001355769, intron 1 of 8)	778.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	18.88	11.06	3.7	40.48	27.06	25.72	9.51	10.61	6.25
Merged-chr12-100024098-1	chr12	100023598	100024598	+	927.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	59599.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	4.58	11.06	9.25	14.17	15.39	17.68	6.34	4.42	8.12
Merged-chr12-117586294-3	chr12	117585805	117586805	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 7 of 27)	intron (NM_175930, intron 7 of 27)	69826.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	1.72	5.99	1.85	0.67	1.4	0.0	1.06	0.88	7.49
Merged-chr13-4940051-3	chr13	4939546	4940546	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-330882.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.15	7.83	5.55	3.37	7.93	4.02	2.11	14.59	5.0
Merged-chr11-120948506-3	chr11	120948015	120949015	+	927.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030696)	promoter-TSS (NM_030696)	31.0	NM_030696	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	45.76	40.55	33.3	39.13	31.72	48.23	46.47	33.6	27.48
Merged-chr15-9118769-2	chr15	9118273	9119273	+	927.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 7 of 9)	L2|LINE|L2	21681.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	4.0	7.83	5.55	24.96	16.33	9.65	11.62	10.17	5.0
Merged-chr13-42103760-3	chr13	42103265	42104265	+	927.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	51744.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	118.42	119.8	57.35	126.17	97.03	46.62	124.63	132.21	60.58
Merged-chr7-75610018-3	chr7	75609510	75610510	+	927.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154476.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	121.85	98.61	33.3	87.71	73.24	74.75	6.34	2.65	3.75
Merged-chr12-33176176-3	chr12	33175681	33176681	+	927.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	28495.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	8.58	7.83	8.32	8.77	12.6	8.84	9.51	8.84	13.12
Merged-chr16-76399862-2	chr16	76399352	76400352	+	927.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26025.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	1.14	2.76	0.92	2.7	6.06	4.02	14.79	7.96	8.12
Merged-chr13-3478164-2	chr13	3477664	3478664	+	927.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015522)	promoter-TSS (NR_015522)	-139.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	5.72	1.84	1.85	12.82	8.4	14.47	5.28	4.42	5.62
Merged-chr3-95655775-3	chr3	95655313	95656313	+	927.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2908.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	38.9	32.25	25.9	31.04	7.93	8.04	41.19	13.71	21.23
Merged-chr5-112298375-3	chr5	112297909	112298909	+	927.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	21718.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	31.46	24.42	22.2	37.11	56.91	24.11	52.81	35.37	13.74
Merged-chr5-100500012-3	chr5	100499513	100500513	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359914, intron 1 of 13)	CpG	626.0	NM_172714	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	119.56	137.31	140.59	134.27	115.69	116.55	142.59	124.69	68.7
Merged-chr5-34501030-3	chr5	34500538	34501538	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139064, intron 2 of 5)	intron (NM_139064, intron 2 of 5)	12941.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	54.35	54.83	31.45	66.8	43.85	57.87	79.21	88.88	38.1
Merged-chr3-85571474-3	chr3	85570986	85571986	+	927.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2643.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	6.29	6.45	3.7	3.37	6.06	7.23	11.62	3.54	12.49
Merged-chr2-180272967-1	chr2	180272467	180273467	+	927.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145851, intron 1 of 9)	intron (NM_145851, intron 1 of 9)	498.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	46.91	19.35	36.07	43.86	12.6	19.29	46.47	12.38	18.74
Merged-chr13-104794638-3	chr13	104794142	104795142	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360094, intron 9 of 13)	intron (NM_001360094, intron 9 of 13)	22311.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	12.01	6.45	3.7	6.75	7.46	4.82	4.22	2.21	8.74
Merged-chr3-18245359-3	chr3	18244858	18245858	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2020.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	4.58	4.15	1.85	4.05	2.8	3.22	4.22	3.1	2.5
Merged-chr2-150922336-3	chr2	150921849	150922849	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	Lx9|LINE|L1	12755.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	120.7	139.16	99.89	132.92	149.28	114.14	122.52	194.11	81.81
Merged-chr5-97087486-3	chr5	97086951	97087951	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080708, exon 16 of 16)	exon (NM_080708, exon 16 of 16)	24145.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	15.45	17.51	23.12	14.84	8.4	5.63	38.02	18.57	21.86
Merged-chr6-87809827-2	chr6	87809340	87810340	+	927.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133717)	promoter-TSS (NM_133717)	-83.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	321.49	381.07	233.09	248.97	215.06	200.95	205.96	253.8	161.75
Merged-chr9-13563675-3	chr9	13563177	13564177	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56312.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	9.15	5.07	0.0	6.75	4.2	10.45	0.0	0.88	7.49
Merged-chr6-17675510-3	chr6	17674971	17675971	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18523.0	NM_001289626	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	8.58	7.83	7.4	8.1	3.73	4.82	7.39	0.88	8.74
Merged-chr10-77974545-3	chr10	77974051	77975051	+	927.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4099.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	75.51	72.34	67.52	61.4	47.58	57.07	90.83	77.82	43.09
Merged-chr17-5841385-7	chr17	5840857	5841857	+	927.488098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025664)	promoter-TSS (NM_025664)	-23.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	322.64	253.89	313.56	294.18	210.86	219.43	339.04	175.1	128.65
Merged-chr4-134728990-3	chr4	134728485	134729485	+	927.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-24695.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	77.8	50.69	52.72	77.59	35.45	16.08	45.42	37.58	9.99
Merged-chr3-97929662-3	chr3	97929173	97930173	+	927.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033779)	promoter-TSS (NM_001033779)	-500.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	42.33	31.79	26.82	21.59	20.06	33.76	24.29	33.16	13.12
Merged-chr11-75566680-3	chr11	75566155	75567155	+	927.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	15226.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	52.63	44.7	40.7	68.82	40.12	97.26	41.19	39.8	22.48
Merged-chr19-12007792-3	chr19	12007200	12008200	+	927.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	29040.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	38.33	35.94	45.32	38.46	29.86	38.58	38.02	34.05	28.73
Merged-chr8-56305382-3	chr8	56304915	56305915	+	927.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	Lx7|LINE|L1	10863.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	46.34	38.71	17.57	29.69	23.33	47.42	23.24	36.26	29.35
Merged-chr2-32689572-3	chr2	32689076	32690076	+	927.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010236, intron 4 of 14)	intron (NM_010236, intron 4 of 14)	-1810.0	NR_106168	102465885.0		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	6.29	3.23	0.0	6.07	2.33	7.23	1.06	1.33	2.5
Merged-chr2-52296958-2	chr2	52296443	52297443	+	927.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010889, intron 27 of 156)	intron (NM_010889, intron 27 of 156)	5941.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	4.58	4.15	5.55	19.57	18.66	32.15	28.52	25.65	20.61
Merged-chr7-16299808-2	chr7	16299320	16300320	+	927.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9763.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	4.0	3.23	1.85	3.37	1.4	3.22	9.51	2.65	4.37
Merged-chr12-85483300-3	chr12	85482778	85483778	+	927.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9388.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	12.59	5.07	1.85	4.05	6.53	6.43	1.06	9.29	3.75
Merged-chr9-44510221-2	chr9	44509669	44510669	+	927.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030256, exon 9 of 9)	3' UTR (NM_030256, exon 9 of 9)	11033.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	18.31	13.82	24.05	20.24	18.19	24.11	32.74	10.61	13.74
Merged-chr13-92861611-1	chr13	92861111	92862111	+	927.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16824.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	1.72	3.23	3.7	2.02	1.4	3.22	6.34	3.98	9.99
Merged-chr19-53406030-3	chr19	53405555	53406555	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15421.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	16.02	8.75	14.8	20.24	9.33	11.25	5.28	0.88	2.5
Merged-chr4-133907277-3	chr4	133906782	133907782	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19485.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	70.36	88.47	69.37	64.77	55.98	57.07	55.98	70.75	30.6
Merged-chr10-91080721-3	chr10	91080233	91081233	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042558, intron 1 of 26)	intron (NM_001042558, intron 1 of 26)	2010.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	17.73	23.5	9.25	31.71	22.39	22.51	59.15	45.1	28.73
Merged-chr13-98946738-3	chr13	98946247	98947247	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-20363.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	40.62	44.7	20.35	72.19	48.98	54.66	57.03	52.18	21.23
Merged-chr5-43181674-3	chr5	43181174	43182174	+	927.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-51789.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	28.03	20.74	37.92	29.01	20.06	26.53	52.81	45.1	34.97
Merged-chr6-53986433-1	chr6	53985933	53986933	+	927.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	7742.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	1.14	4.61	5.55	2.02	4.2	0.0	23.24	28.3	26.85
Merged-chr16-38433034-4	chr16	38432458	38433458	+	927.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134102, exon 1 of 11)	5' UTR (NM_134102, exon 1 of 11)	187.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	10.3	8.29	8.32	12.14	7.46	20.09	12.67	8.84	11.87
Merged-chr8-117267601-3	chr8	117267100	117268100	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	10581.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	111.55	110.59	98.05	143.71	95.17	119.76	87.66	117.17	76.19
Merged-chr11-78032217-3	chr11	78031733	78032733	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183286)	promoter-TSS (NM_183286)	-80.0	NM_183286	70451.0	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	20.02	3.69	0.0	11.47	4.2	8.04	7.39	2.21	6.25
Merged-chr13-65019016-3	chr13	65018514	65019514	+	927.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14044.0	NM_001083890	238683.0	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	50.34	54.83	24.05	42.51	38.72	36.17	64.43	76.49	16.24
Merged-chr10-93432655-3	chr10	93432192	93433192	+	927.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106161)	promoter-TSS (NR_106161)	-415.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	6.86	2.76	3.7	18.89	15.86	4.82	3.17	2.21	2.5
Merged-chr16-38467568-3	chr16	38467073	38468073	+	927.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 1 of 5)	intron (NM_001359898, intron 1 of 5)	8640.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	22.88	11.98	9.25	14.84	14.0	10.45	10.56	10.61	6.25
Merged-chr2-153649693-3	chr2	153649230	153650230	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010068, exon 1 of 21)	5' UTR (NM_010068, exon 1 of 21)	281.0	NM_001271747	13436.0	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	17.73	11.98	7.4	51.28	25.66	22.51	22.18	13.27	11.87
Merged-chr4-49567821-3	chr4	49567314	49568314	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18268.0	NM_144903	230163.0	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	4.58	1.84	1.85	3.37	3.27	3.22	2.11	0.44	1.25
Merged-chr18-58567290-3	chr18	58566780	58567780	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11040.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	93.82	104.14	34.22	89.74	113.83	77.16	45.42	63.67	33.72
Merged-chr3-9573818-3	chr3	9573318	9574318	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	36267.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.0	3.23	3.7	6.75	7.46	3.22	6.34	3.98	1.25
Merged-chr1-182928635-3	chr1	182928089	182929089	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26199.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	101.83	107.82	72.15	26.31	28.46	16.88	42.25	28.74	24.98
Merged-chr18-68096733-3	chr18	68096234	68097234	+	927.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	-131212.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.44	11.06	8.32	4.72	8.86	8.84	5.28	4.42	5.0
Merged-chr2-163703151-3	chr2	163702658	163703658	+	927.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	9121.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	24.03	16.13	13.87	18.89	13.53	6.43	15.84	6.63	8.74
Merged-chr14-61744096-2	chr14	61743586	61744586	+	927.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61713.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	13.73	15.67	5.55	12.14	7.46	20.09	7.39	5.75	3.75
Merged-chr1-172191699-3	chr1	172191185	172192185	+	927.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151641, intron 11 of 13)	intron (NR_151641, intron 11 of 13)	15119.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	22.31	22.58	27.75	24.96	12.6	33.76	31.69	22.55	19.36
Merged-chrX-73918875-3	chrX	73918369	73919369	+	927.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019870, intron 6 of 7)	intron (NM_019870, intron 6 of 7)	3075.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	37.76	23.5	31.45	25.64	13.06	34.56	25.35	35.37	33.72
Merged-chr4-46580893-1	chr4	46580393	46581393	+	927.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	MMTV-int|LTR|ERVK	-14453.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.57	0.0	0.0	0.0	0.0	0.0	345.37	476.66	159.88
Merged-chr18-34247127-3	chr18	34246653	34247653	+	927.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360979)	promoter-TSS (NM_001360979)	-541.0	NM_001360980	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	86.95	75.57	37.92	97.16	54.11	39.39	121.46	87.11	44.97
Merged-chr1-172377257-2	chr1	172376735	172377735	+	927.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026234, exon 1 of 1)	exon (NM_026234, exon 1 of 1)	704.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	100.11	56.68	81.4	85.01	74.17	79.58	57.03	61.02	37.47
Merged-chr15-38382703-3	chr15	38382167	38383167	+	927.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie15a|DNA|hAT-Charlie	-81956.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	16.59	11.06	12.02	21.59	16.33	14.47	14.79	15.48	15.61
Merged-chr11-101627891-3	chr11	101627364	101628364	+	927.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-85.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	30.32	28.11	52.72	43.18	24.72	45.82	51.75	39.35	51.21
Merged-chr8-125282698-3	chr8	125282205	125283205	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210128.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.59	12.44	9.25	22.94	16.79	19.29	16.9	11.5	16.24
Merged-chrX-168639876-3	chrX	168639390	168640390	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34012.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	22.88	20.27	12.95	14.17	21.93	22.51	25.35	17.69	16.24
Merged-chr19-45581470-3	chr19	45580955	45581955	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	20870.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	5.15	3.69	1.85	2.02	2.33	0.0	10.56	0.88	5.0
Merged-chr14-17885462-3	chr14	17884848	17885848	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-96296.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	17.73	33.64	20.35	22.27	27.99	32.15	16.9	17.69	21.23
Merged-chr5-134531840-3	chr5	134531348	134532348	+	927.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 2 of 15)	intron (NM_001039162, intron 2 of 15)	20586.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	97.25	82.94	50.87	87.04	49.45	60.28	61.26	90.2	31.85
Merged-chr6-86572558-2	chr6	86572053	86573053	+	927.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	45152.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	9.15	9.68	1.85	14.84	12.13	14.47	24.29	17.69	14.36
Merged-chr16-10990094-3	chr16	10989603	10990603	+	927.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	B3A|SINE|B2	3018.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	42.33	52.99	41.62	33.74	25.19	49.03	33.8	43.33	31.23
Merged-chr2-173534769-2	chr2	173534277	173535277	+	927.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12185.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	9.72	8.29	4.62	18.22	14.93	20.09	26.4	31.39	17.49
Merged-chr17-13905790-2	chr17	13905291	13906291	+	927.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010806)	TTS (NM_010806)	-42582.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	24.03	24.42	20.35	43.18	41.05	48.23	22.18	18.57	21.23
Merged-chr13-94173904-2	chr13	94173372	94174372	+	927.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	111409.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	5.72	5.53	8.32	10.8	11.66	11.25	4.22	4.42	6.25
Merged-chr2-166553669-2	chr2	166553171	166554171	+	927.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10851.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	34.32	58.06	61.05	65.45	64.84	60.28	80.27	128.23	44.97
Merged-chr6-138095284-3	chr6	138094776	138095776	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15360.0	NM_177787	277898.0	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	10.3	11.98	12.95	6.07	5.13	7.23	4.22	9.29	11.24
Merged-chr12-54655636-3	chr12	54655122	54656122	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134054, intron 1 of 1)	intron (NM_134054, intron 1 of 1)	950.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	81.8	78.33	34.22	58.7	82.57	45.01	84.49	80.92	48.09
Merged-chr6-66849107-3	chr6	66848596	66849596	+	927.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43764.0	NM_001166720	546903.0	Mm.484975	NM_001166720	ENSMUSG00000093755	Vmn1r39	EG546903|Gm5993	vomeronasal 1 receptor 39	protein-coding	5.72	4.15	7.4	3.37	2.8	3.22	3.17	0.44	0.0
Merged-chr16-49876324-3	chr16	49875811	49876811	+	927.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 3 of 9)	intron (NM_010581, intron 3 of 9)	20657.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	26.89	21.2	27.75	30.36	10.26	33.76	29.57	15.48	19.36
Merged-chr8-90834219-3	chr8	90833794	90834794	+	927.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	5459.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	46.91	42.39	33.3	20.24	14.46	20.09	27.46	37.58	25.61
Merged-chr2-22965616-3	chr2	22965111	22966111	+	927.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 3 of 10)	intron (NM_001077190, intron 3 of 10)	70089.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	16.59	24.88	3.7	20.92	19.13	12.86	30.63	19.9	18.74
Merged-chr6-8032157-1	chr6	8031657	8032657	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	160460.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	12.59	19.81	14.8	6.07	0.0	3.22	5.28	1.77	8.12
Merged-chr4-129019055-3	chr4	129018546	129019546	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25822.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	25.17	17.51	10.17	16.19	9.8	17.68	11.62	14.59	13.74
Merged-chr12-24789856-1	chr12	24789356	24790356	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-41743.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	6.29	8.29	3.7	4.05	7.46	9.65	4.22	3.1	3.75
Merged-chr9-47893161-1	chr9	47892661	47893661	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-74953.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	3.43	4.15	0.0	5.4	3.27	0.0	0.0	1.77	1.25
Merged-chr12-34714384-1	chr12	34713884	34714884	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-185495.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	68.65	108.28	59.2	59.38	77.44	61.89	73.93	77.82	60.58
Merged-chr4-149890100-1	chr4	149889600	149890600	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64906.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.58	3.69	0.0	5.4	3.27	6.43	2.11	3.54	3.12
Merged-chr1-131436821-1	chr1	131436321	131437321	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081011, exon 3 of 23)	exon (NM_001081011, exon 3 of 23)	90540.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	38.33	37.32	25.9	29.01	20.53	28.13	35.91	30.51	28.1
Merged-chr17-26138745-4	chr17	26138387	26139387	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009733, exon 1 of 11)	5' UTR (NM_009733, exon 1 of 11)	201.0	NM_001159598	12005.0	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	94.96	55.75	68.45	81.64	55.51	64.3	58.09	29.18	41.22
Merged-chr10-91032671-1	chr10	91032171	91033171	+	927.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042558, intron 16 of 26)	intron (NM_001042558, intron 16 of 26)	50072.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	2.29	1.84	3.7	4.72	2.8	0.0	2.11	6.63	7.49
Merged-chr13-64154128-3	chr13	64153624	64154624	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175494)	promoter-TSS (NM_175494)	-925.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	85.81	55.29	17.57	85.01	65.31	27.33	103.51	80.92	43.72
Merged-chr9-120029637-1	chr9	120029137	120030137	+	927.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6039.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	19.45	15.21	10.17	35.09	14.0	16.88	24.29	18.13	10.62
Merged-chr4-55655522-3	chr4	55655028	55656028	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123053.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.01	9.68	5.55	5.4	2.33	10.45	3.17	2.21	3.75
Merged-chr5-100583298-3	chr5	100582798	100583798	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11093.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	19.45	15.21	15.72	39.81	9.33	9.65	42.25	32.28	11.24
Merged-chr2-45554913-3	chr2	45554415	45555415	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141690.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	15.45	16.13	3.7	18.89	18.19	26.53	15.84	9.73	8.12
Merged-chr13-45031461-3	chr13	45030963	45031963	+	927.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29367.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	139.01	118.42	85.1	153.84	133.89	99.67	114.07	118.94	27.48
Merged-chr2-73548806-3	chr2	73548316	73549316	+	926.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19329.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	15.45	15.21	11.1	14.84	8.86	33.76	19.01	11.5	8.74
Merged-chr9-13443722-3	chr9	13443247	13444247	+	926.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12386.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	30.32	19.81	11.1	27.66	17.73	8.04	13.73	9.29	7.49
Merged-chr2-121414437-3	chr2	121413899	121414899	+	926.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153075)	promoter-TSS (NM_153075)	497.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	275.16	271.86	209.04	246.27	236.52	159.95	216.52	229.04	143.02
Merged-chr9-69987771-3	chr9	69987268	69988268	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1698.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	6.86	9.68	3.7	13.49	3.73	16.88	11.62	5.31	5.0
Merged-chr1-52764234-3	chr1	52763737	52764737	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36879.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	21.74	15.67	18.5	28.34	23.79	28.13	32.74	34.05	22.48
Merged-chr3-10430081-3	chr3	10429584	10430584	+	926.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127191, intron 4 of 6)	intron (NM_001127191, intron 4 of 6)	10046.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	9.15	9.68	13.87	12.14	13.53	8.04	5.28	8.4	2.5
Merged-chr16-33829639-3	chr16	33829114	33830114	+	926.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010580)	promoter-TSS (NM_010580)	-51.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	43.48	50.23	87.87	48.58	42.45	52.25	71.82	45.1	41.22
Merged-chr18-65376209-2	chr18	65375706	65376706	+	926.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 2 of 12)	intron (NM_001037294, intron 2 of 12)	17682.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	1.72	2.3	12.95	6.07	3.27	9.65	2.11	1.33	1.25
Merged-chr7-126941301-3	chr7	126940812	126941812	+	926.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172747, intron 2 of 5)	intron (NM_172747, intron 2 of 5)	7847.0	NM_001347657	233879.0	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	13.16	11.98	26.82	19.57	9.33	25.72	31.69	13.27	13.12
Merged-chr6-22363732-3	chr6	22363227	22364227	+	926.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7646.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	1.72	6.91	3.7	10.8	8.4	5.63	4.22	4.42	3.12
Merged-chrX-20345184-3	chrX	20344692	20345692	+	926.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-19289.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	45.76	28.11	21.27	25.64	16.33	6.43	23.24	26.97	9.37
Merged-chr17-28435118-3	chr17	28434618	28435618	+	926.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	intron (NM_010220, intron 3 of 10)	51031.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	31.46	37.32	35.15	39.13	29.86	45.82	34.85	53.94	33.72
Merged-chr9-118651105-3	chr9	118650643	118651643	+	926.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	44434.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	56.63	47.92	37.92	72.87	75.11	108.51	79.21	57.48	36.85
Merged-chr6-55203786-2	chr6	55203278	55204278	+	926.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142781, intron 1 of 17)	intron (NM_001142781, intron 1 of 17)	395.0	NM_001142781	330323.0	Mm.268997	NM_177883	ENSMUSG00000038022	Mindy4	C330043M08Rik|Fam188b|Gm1406	MINDY lysine 48 deubiquitinase 4	protein-coding	17.73	8.29	17.57	17.54	24.26	6.43	25.35	11.94	13.74
Merged-chr6-28430924-4	chr6	28430371	28431371	+	926.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019569, intron 2 of 6)	(CTG)n|Simple_repeat|Simple_repeat	2970.0	NM_019569	56223.0	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	28.6	29.49	26.82	17.54	20.99	38.58	17.96	20.34	42.47
Merged-chr1-165667594-3	chr1	165667093	165668093	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	-33052.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	190.49	164.04	113.77	149.79	128.29	126.19	142.59	179.08	109.92
Merged-chr8-56412194-3	chr8	56411695	56412695	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72773.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	11.44	7.83	3.7	9.45	5.6	4.82	8.45	5.75	8.12
Merged-chr15-50762886-3	chr15	50762388	50763388	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	126161.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.73	9.68	10.17	20.92	19.13	19.29	42.25	50.85	16.86
Merged-chr5-122379958-3	chr5	122379468	122380468	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024216, intron 3 of 7)	intron (NM_024216, intron 3 of 7)	7460.0	NM_024216	68080.0	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	7.44	7.37	3.7	8.1	3.73	12.06	5.28	2.21	3.12
Merged-chr13-4767064-3	chr13	4766583	4767583	+	926.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-157919.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	17.73	21.66	23.12	15.52	13.06	20.09	14.79	7.96	8.12
Merged-chr12-29713073-1	chr12	29712573	29713573	+	926.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-26628.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	8.01	15.21	8.32	20.24	22.39	20.09	67.6	45.99	38.72
Merged-chr9-64253112-2	chr9	64252608	64253608	+	926.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	497.0	NM_008927	26395.0	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	112.69	137.31	143.37	116.05	113.36	165.58	163.71	152.11	81.81
Merged-chr1-151584903-4	chr1	151584366	151585366	+	926.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	MTD|LTR|ERVL-MaLR	13493.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	60.07	28.11	19.42	123.47	82.57	81.18	85.55	79.59	49.96
Merged-chr2-130785119-2	chr2	130784623	130785623	+	926.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 11 of 36)	intron (NM_029432, intron 11 of 36)	18978.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	13.16	6.45	3.7	38.46	43.39	44.21	7.39	6.63	1.25
Merged-chr5-117938427-3	chr5	117937966	117938966	+	926.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 21 of 27)	intron (NM_008712, intron 21 of 27)	-38304.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	4.0	1.84	7.4	4.05	3.27	0.0	3.17	0.0	1.25
Merged-chr11-47197488-3	chr11	47196984	47197984	+	926.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	181818.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	5.72	7.37	6.47	16.19	0.47	0.0	8.45	3.98	5.0
Merged-chr3-146154018-3	chr3	146153514	146154514	+	926.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	3840.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	38.9	44.7	33.3	36.43	29.86	14.47	22.18	15.03	9.37
Merged-chr10-111189319-3	chr10	111188810	111189810	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	MTC|LTR|ERVL-MaLR	24508.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	28.6	24.42	18.5	24.29	16.79	19.29	40.14	18.13	14.99
Merged-chr15-78334585-3	chr15	78334103	78335103	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	8613.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	9.72	14.75	13.87	22.27	6.06	14.47	9.51	11.05	5.0
Merged-chr17-80560952-3	chr17	80560465	80561465	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 1 of 9)	intron (NM_001360144, intron 1 of 9)	2869.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	13.16	5.07	3.7	12.14	5.6	8.84	5.28	4.42	1.87
Merged-chr18-61452451-3	chr18	61451948	61452948	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32159.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	144.16	107.82	104.52	97.83	49.92	67.52	125.69	122.04	87.43
Merged-chrX-96242791-1	chrX	96242291	96243291	+	926.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029801)	promoter-TSS (NR_029801)	-26.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	37.18	45.16	48.1	21.59	26.59	37.78	25.35	34.93	29.35
Merged-chr9-63613769-3	chr9	63613270	63614270	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	11124.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	110.41	127.18	121.17	124.82	90.04	114.14	149.98	198.98	84.94
Merged-chr6-149357292-3	chr6	149356785	149357785	+	926.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB3_1-LTR_MM|LTR|ERVK	47871.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	17.16	10.14	25.9	16.87	5.6	1.61	27.46	20.78	16.24
Merged-chr1-134703700-2	chr1	134703194	134704194	+	926.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-5606.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	6.86	7.37	12.95	0.67	1.4	13.66	7.39	0.88	2.5
Merged-chr11-103389923-3	chr11	103389438	103390438	+	926.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 4 of 11)	L1M2|LINE|L1	22726.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	40.04	39.63	30.52	60.05	47.12	42.6	50.7	37.14	35.6
Merged-chr19-5017039-3	chr19	5016529	5017529	+	926.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6977.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	10.87	5.07	2.77	9.45	7.93	8.84	8.45	3.54	5.0
Merged-chr3-69202515-3	chr3	69202012	69203012	+	926.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19907.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	24.6	19.35	22.2	8.1	7.0	7.23	27.46	28.3	21.86
Merged-chr3-67512977-3	chr3	67512488	67513488	+	926.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164763, intron 1 of 5)	intron (NM_001164763, intron 1 of 5)	2535.0	NM_001164763	109222.0	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	3.43	3.23	0.0	4.72	1.4	0.0	3.17	2.21	1.25
Merged-chr4-43960489-3	chr4	43960011	43961011	+	926.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	B4A|SINE|B4	2809.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	74.37	78.79	84.17	51.95	27.06	34.56	63.37	83.13	51.84
Merged-chr8-47690062-2	chr8	47689559	47690559	+	926.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14900.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	21.74	20.27	20.35	24.96	20.06	19.29	15.84	26.97	16.24
Merged-chr8-39308362-2	chr8	39307868	39308868	+	926.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10388.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	32.61	53.91	29.6	17.54	21.93	20.9	3.17	2.65	2.5
Merged-chr17-34249956-3	chr17	34249467	34250467	+	926.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11062.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	13.16	8.29	2.77	17.54	2.8	5.63	15.84	7.96	5.0
Merged-chr4-105317019-3	chr4	105316514	105317514	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	159667.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	34.9	41.47	15.72	24.96	36.85	40.19	50.7	40.24	22.48
Merged-chr8-56328392-3	chr8	56327901	56328901	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33849.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	12.59	11.98	1.85	21.59	8.4	6.43	12.67	9.29	9.37
Merged-chr16-32087799-3	chr16	32087301	32088301	+	926.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8459.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	16.59	10.6	9.25	19.57	14.0	12.86	14.79	11.5	9.99
Merged-chr11-98943472-3	chr11	98942931	98943931	+	926.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3720.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	122.42	103.68	56.42	104.58	55.51	73.14	100.34	76.94	75.57
Merged-chr6-146674681-1	chr6	146674181	146675181	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	17463.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	90.38	67.74	25.9	130.9	90.04	94.04	58.09	61.9	26.23
Merged-chr14-45036784-3	chr14	45036287	45037287	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	48676.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	13.16	8.29	24.05	10.12	12.13	4.82	12.67	14.59	7.49
Merged-chr4-133390719-1	chr4	133390219	133391219	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016981, intron 1 of 11)	MIR3|SINE|MIR	20943.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	7.44	8.75	16.65	21.59	17.73	18.49	15.84	7.52	9.37
Merged-chr4-88701718-1	chr4	88701218	88702218	+	926.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10450.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	33.18	39.17	41.62	19.57	14.0	40.99	14.79	16.36	36.85
Merged-chr3-30977333-3	chr3	30976855	30977855	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7940.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	20.02	9.22	12.95	16.87	11.66	12.86	27.46	8.84	4.37
Merged-chr6-32588152-3	chr6	32587602	32588602	+	926.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	90.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	34.9	23.04	19.42	39.81	23.79	31.35	32.74	13.71	13.74
Merged-chr17-32040466-3	chr17	32039983	32040983	+	926.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028244, intron 1 of 15)	RSINE1|SINE|B4	4321.0	NM_028244	72462.0	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	5.72	7.83	13.87	8.1	10.26	4.82	8.45	9.73	13.12
Merged-chr14-58323321-3	chr14	58322829	58323829	+	926.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	250643.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	22.31	16.13	18.5	26.31	13.53	44.21	33.8	31.39	17.49
Merged-chr3-30593896-3	chr3	30593390	30594390	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	5980.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	10.3	3.69	3.7	2.02	6.06	6.43	5.28	3.98	5.62
Merged-chr9-54507767-3	chr9	54507270	54508270	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-6144.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	4.0	13.36	5.55	8.77	3.73	9.65	5.28	3.1	9.99
Merged-chr4-145229315-3	chr4	145228817	145229817	+	926.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	17553.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	33.75	51.61	42.55	50.6	38.72	75.56	49.64	39.35	21.86
Merged-chr12-52454082-3	chr12	52453583	52454583	+	926.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26526.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	10.87	7.37	0.0	8.1	7.46	1.61	9.51	7.52	5.0
Merged-chr18-80161704-3	chr18	80161229	80162229	+	926.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10247.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	15.45	13.82	21.27	12.14	6.06	11.25	17.96	4.86	17.49
Merged-chr7-102204730-3	chr7	102204224	102205224	+	926.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287166, intron 1 of 19)	MTD|LTR|ERVL-MaLR	5143.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	48.05	53.45	34.22	39.13	31.26	24.11	46.47	61.02	34.97
Merged-chr4-132514931-3	chr4	132514437	132515437	+	926.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4481.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	96.68	97.23	62.9	72.19	73.24	56.27	137.3	173.77	56.83
Merged-chr7-4238119-2	chr7	4237619	4238619	+	926.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081239, intron 2 of 5)	intron (NM_001081239, intron 2 of 5)	365.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	313.49	438.21	308.01	382.56	353.61	321.52	403.46	531.48	270.42
Merged-chr19-14596507-3	chr19	14596007	14597007	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 2 of 19)	intron (NM_001302951, intron 2 of 19)	706.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	129.86	139.16	97.12	98.51	83.51	83.59	136.25	134.42	68.7
Merged-chr3-89858360-3	chr3	89857848	89858848	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172530, exon 6 of 6)	3' UTR (NM_172530, exon 6 of 6)	26978.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.15	6.45	4.62	2.7	3.73	1.61	9.51	3.98	1.87
Merged-chr11-100848195-3	chr11	100847677	100848677	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2408.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	100.11	88.47	45.32	63.42	53.65	48.23	89.78	105.24	49.96
Merged-chr6-40585866-3	chr6	40585368	40586368	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021364)	promoter-TSS (NM_021364)	-63.0	NM_001038604	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	8.58	9.68	10.17	16.87	6.53	3.22	8.45	1.77	11.24
Merged-chr4-63817739-3	chr4	63817250	63818250	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	43534.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	13.73	14.75	5.55	19.57	7.93	9.65	13.73	14.15	4.37
Merged-chr19-45236710-3	chr19	45236235	45237235	+	926.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1499.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	4.0	4.15	1.85	4.05	2.33	4.82	1.06	2.21	2.5
Merged-chr15-83016191-1	chr15	83015691	83016691	+	926.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028728, intron 2 of 5)	intron (NM_028728, intron 2 of 5)	6947.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	5.72	4.61	9.25	2.02	2.8	3.22	30.63	17.24	13.74
Merged-chrX-155144874-3	chrX	155144408	155145408	+	926.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081671, intron 1 of 2)	intron (NM_001081671, intron 1 of 2)	2941.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	17.16	14.28	11.1	9.45	12.6	14.47	13.73	17.69	5.0
Merged-chr2-34800635-3	chr2	34800141	34801141	+	926.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145522)	promoter-TSS (NM_145522)	-729.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	53.77	94.0	51.8	68.15	79.31	66.71	60.2	91.97	68.7
Merged-chr10-98608626-3	chr10	98608133	98609133	+	926.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256766.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	65.79	70.04	34.22	49.25	31.26	25.72	38.02	43.33	19.98
Merged-chr2-103019238-2	chr2	103018733	103019733	+	926.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54280.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	12.01	17.51	5.55	21.59	11.66	12.86	17.96	5.75	3.75
Merged-chr4-123667614-2	chr4	123667115	123668115	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_136925, exon 2 of 4)	non-coding (NR_136925, exon 2 of 4)	1734.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	19.45	17.97	9.25	23.62	12.13	25.72	26.4	19.01	23.73
Merged-chr10-70215001-3	chr10	70214501	70215501	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	intron (NM_001304739, intron 1 of 2)	10337.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	60.07	83.4	44.4	72.19	61.11	48.23	95.06	94.62	44.97
Merged-chr5-18013581-4	chr5	18013156	18014156	+	926.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	51086.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	116.13	105.06	46.25	126.85	93.3	77.16	101.39	133.53	67.45
Merged-chr17-29494775-5	chr17	29494298	29495298	+	926.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008842, exon 6 of 6)	3' UTR (NM_008842, exon 6 of 6)	3753.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	41.19	24.88	16.65	8.77	8.86	0.8	7.39	9.73	1.87
Merged-chr7-118796971-3	chr7	118796477	118797477	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027815, exon 19 of 31)	exon (NM_027815, exon 19 of 31)	56706.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	110.41	97.69	70.3	93.79	87.7	55.46	91.89	79.59	51.84
Merged-chr6-51533989-3	chr6	51533490	51534490	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	9730.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	117.84	118.42	81.4	97.16	124.09	81.18	115.12	84.01	53.71
Merged-chr11-99187001-3	chr11	99186496	99187496	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31919.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	40.62	24.88	38.85	23.62	9.33	18.49	36.97	28.74	5.0
Merged-chr10-93594143-3	chr10	93593646	93594646	+	926.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-4488.0	NM_027246	69878.0	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	4.0	4.15	5.55	4.72	5.13	3.22	11.62	4.42	1.25
Merged-chr4-34882771-5	chr4	34882214	34883214	+	926.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013889, intron 1 of 7)	CpG	234.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	166.47	105.98	107.29	211.86	97.97	118.16	194.34	110.98	69.32
Merged-chr13-12626253-3	chr13	12625761	12626761	+	926.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 2 of 6)	intron (NR_003568, intron 2 of 6)	24134.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	6.86	6.45	4.62	10.8	1.87	4.82	9.51	3.1	2.5
Merged-chr16-23284611-3	chr16	23284128	23285128	+	926.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-5842.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	26.89	11.06	15.72	26.99	19.13	17.68	17.96	18.13	11.87
Merged-chr9-124056525-3	chr9	124056002	124057002	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34531.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	48.05	53.91	43.47	55.33	30.79	70.73	44.36	58.81	38.1
Merged-chr9-111086329-1	chr9	111085829	111086829	+	926.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28811.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.15	3.23	0.0	14.17	8.4	5.63	2.11	0.44	1.25
Merged-chr9-21410080-3	chr9	21409589	21410589	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045742, intron 1 of 4)	intron (NR_045742, intron 1 of 4)	1631.0	NR_045742	330902.0	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	4.0	2.3	5.55	8.77	4.67	4.82	0.0	2.65	1.87
Merged-chr14-54449140-3	chr14	54448698	54449698	+	926.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14949.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	7.44	6.45	1.85	7.42	2.33	7.23	7.39	8.84	1.25
Merged-chr1-86516221-3	chr1	86515723	86516723	+	926.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10334.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	4.0	4.61	11.1	7.42	5.6	4.02	8.45	6.19	3.75
Merged-chr13-46905201-3	chr13	46904709	46905709	+	926.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	24509.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	25.74	21.66	31.45	21.59	20.53	40.99	58.09	60.13	68.7
Merged-chr2-120977475-3	chr2	120976964	120977964	+	926.119019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175285, exon 1 of 14)	exon (NM_175285, exon 1 of 14)	402.0	NM_175285	96957.0	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	56.06	61.75	48.1	82.99	63.91	60.28	59.15	48.64	31.85
Merged-chr5-124598725-3	chr5	124598239	124599239	+	926.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026486)	promoter-TSS (NM_026486)	-10.0	NM_026486	67978.0	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	4.58	0.46	3.7	1.35	1.87	0.0	4.22	4.42	5.0
Merged-chrX-142718908-3	chrX	142718418	142719418	+	926.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-20082.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	7.44	7.83	2.77	15.52	16.33	11.25	8.45	10.17	1.25
Merged-chr6-54008973-3	chr6	54008495	54009495	+	926.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30304.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	24.03	23.04	9.25	41.16	32.19	52.25	82.38	87.55	53.71
Merged-chr7-49250265-3	chr7	49249806	49250806	+	926.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	4117.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	9.15	0.92	4.62	6.07	2.33	12.86	3.17	1.77	1.25
Merged-chr5-72556342-3	chr5	72555840	72556840	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133921, exon 3 of 23)	exon (NM_133921, exon 3 of 23)	3305.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	33.18	52.53	24.97	25.64	24.26	47.42	31.69	42.01	33.72
Merged-chr17-71486187-6	chr17	71485680	71486680	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10837.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	223.67	221.18	160.02	174.08	234.19	188.09	325.31	389.99	168.0
Merged-chr2-163535127-3	chr2	163534619	163535619	+	926.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	6602.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	9.15	6.45	3.7	12.14	5.13	1.61	6.34	2.65	5.0
Merged-chr2-157138239-4	chr2	157137798	157138798	+	926.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3076.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	79.52	96.76	61.05	64.77	52.72	71.54	86.61	95.07	53.71
Merged-chr16-29454984-2	chr16	29454481	29455481	+	926.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172613, intron 11 of 29)	intron (NM_172613, intron 11 of 29)	-76249.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	5.72	9.22	18.5	16.87	20.99	32.15	12.67	11.05	21.23
Merged-chr9-45893930-3	chr9	45893421	45894421	+	926.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178709, intron 5 of 13)	MTC|LTR|ERVL-MaLR	12261.0	NM_001361114	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	37.76	34.56	50.87	30.36	31.26	66.71	38.02	33.6	34.35
Merged-chr11-102447661-2	chr11	102447176	102448176	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199200)	promoter-TSS (NM_199200)	-13.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	4.58	0.46	1.85	9.45	1.4	1.61	4.22	2.21	0.62
Merged-chr9-105129988-2	chr9	105129483	105130483	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029385, exon 3 of 3)	3' UTR (NM_029385, exon 3 of 3)	1822.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	53.77	75.11	35.15	73.54	76.97	49.83	14.79	19.9	3.75
Merged-chr6-114456663-1	chr6	114456163	114457163	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252643, intron 2 of 2)	GC_rich|Low_complexity|Low_complexity	-1859.0	NM_001317124	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	18.31	25.8	7.4	29.01	14.46	24.11	35.91	32.28	32.48
Merged-chr13-81109925-3	chr13	81109424	81110424	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145850.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	74.37	64.05	46.25	112.0	104.03	58.68	83.44	95.51	66.2
Merged-chr10-110918672-3	chr10	110918196	110919196	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1480.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	11.44	6.91	0.0	24.96	17.73	20.9	15.84	14.59	7.49
Merged-chr10-4120904-1	chr10	4120404	4121404	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	92216.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	5.72	4.61	1.85	2.7	4.2	6.43	0.0	2.65	2.5
Merged-chr17-34604761-2	chr17	34604267	34605267	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1094.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	300.9	272.78	247.89	205.11	156.75	182.46	265.1	287.41	176.74
Merged-chr9-44192867-1	chr9	44192367	44193367	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	L1MB4|LINE|L1	41179.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	28.03	46.08	47.17	35.76	28.92	28.13	26.4	21.67	26.23
Merged-chr15-8714088-2	chr15	8713590	8714590	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3283.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.01	13.36	11.1	0.67	2.33	8.04	10.56	10.17	3.75
Merged-chr16-20159149-1	chr16	20158649	20159649	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001145931, exon 6 of 8)	exon (NM_001145931, exon 6 of 8)	17085.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	5.15	0.92	7.4	14.17	6.53	8.84	6.34	4.42	2.5
Merged-chrUn_JH584304-53115-1	chrUn_JH584304	52615	53615	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	6574.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	39.08	32.28	0.0
Merged-chr2-27328408-1	chr2	27327908	27328908	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-81105.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	41.19	28.11	36.07	45.21	41.52	57.07	27.46	17.24	28.73
Merged-chr3-107710198-1	chr3	107709698	107710698	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-13638.0	NM_145542	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	2.86	3.69	3.7	4.72	1.4	0.0	3.17	8.4	3.75
Merged-chr3-144138794-2	chr3	144138293	144139293	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	63539.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.58	4.15	1.85	2.02	2.33	1.61	6.34	3.98	2.5
Merged-chr10-118604134-1	chr10	118603634	118604634	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47609.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	7.44	8.75	10.17	6.75	8.4	6.43	10.56	14.59	12.49
Merged-chr1-170361457-1	chr1	170360957	170361957	+	926.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	intron (NM_001109985, intron 4 of 9)	52596.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	0.57	2.76	0.0	9.45	12.13	9.65	4.22	1.77	3.75
Merged-chr17-32164067-3	chr17	32163574	32164574	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008716, intron 2 of 32)	intron (NM_008716, intron 2 of 32)	2778.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	7.44	4.61	0.0	8.77	1.87	0.0	0.0	1.33	2.5
Merged-chr16-94517831-3	chr16	94517305	94518305	+	926.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	Lx5c|LINE|L1	8824.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	16.59	17.97	16.65	39.81	23.79	25.72	26.4	20.34	11.24
Merged-chr17-80127479-1	chr17	80126979	80127979	+	926.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176963)	promoter-TSS (NM_176963)	8.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	134.43	153.44	66.6	237.5	265.44	144.68	137.3	183.5	70.57
Merged-chr5-105620674-3	chr5	105620181	105621181	+	925.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79288.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	24.03	15.67	21.27	25.64	9.8	20.09	14.79	13.27	9.37
Merged-chr1-177257552-6	chr1	177257124	177258124	+	925.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-8857.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	101.83	77.87	104.52	124.15	57.85	111.73	141.53	70.3	75.57
Merged-chr4-137373834-3	chr4	137373302	137374302	+	925.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16043.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	169.33	122.57	111.92	162.61	96.57	138.25	200.68	197.65	78.69
Merged-chr4-141545131-3	chr4	141544609	141545609	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1053.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	211.09	168.19	130.42	244.25	163.28	156.74	184.83	214.45	111.79
Merged-chrX-12123073-3	chrX	12122565	12123565	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	37281.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	25.74	15.67	12.95	14.17	9.8	15.27	13.73	9.29	6.25
Merged-chr11-120628185-3	chr11	120627678	120628678	+	925.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010756)	TTS (NM_010756)	-3176.0	NM_153056	209011.0	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	29.17	19.35	33.3	27.66	19.59	24.11	20.07	27.41	19.98
Merged-chr5-130283195-3	chr5	130282689	130283689	+	925.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153350, exon 9 of 16)	non-coding (NR_153350, exon 9 of 16)	26152.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	13.73	20.27	24.05	28.34	23.79	29.74	30.63	18.57	15.61
Merged-chr4-95053948-3	chr4	95053416	95054416	+	925.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1694.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	96.11	102.75	74.92	92.44	53.65	94.04	128.85	142.38	90.56
Merged-chr16-35765062-2	chr16	35764560	35765560	+	925.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	4296.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	88.1	72.34	45.32	80.29	35.45	72.34	53.87	29.63	33.1
Merged-chr4-87653614-3	chr4	87653104	87654104	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	152719.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	1.14	3.69	9.25	10.8	7.0	1.61	7.39	2.21	2.5
Merged-chr17-3160861-3	chr17	3160360	3161360	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 4 of 19)	CT-rich|Low_complexity|Low_complexity	45888.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	28.03	35.02	16.65	40.48	48.98	48.23	35.91	35.37	9.37
Merged-chr1-182959348-3	chr1	182958843	182959843	+	925.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	4555.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	45.76	36.86	14.8	24.96	10.26	10.45	14.79	7.96	9.99
Merged-chr10-122535344-3	chr10	122534834	122535834	+	925.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34557.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	58.92	66.81	28.67	71.52	98.9	73.95	78.16	115.41	34.97
Merged-chr13-112671868-2	chr13	112671364	112672364	+	925.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	Kanga1|DNA|TcMar-Tc2	11098.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	3.43	5.99	5.55	6.07	5.6	5.63	32.74	30.95	14.36
Merged-chr3-81046739-1	chr3	81046239	81047239	+	925.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	10323.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	68.65	90.31	49.02	83.66	96.57	98.06	71.82	100.81	39.97
Merged-chr4-119976772-5	chr4	119976289	119977289	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	(TC)n|Simple_repeat|Simple_repeat	162111.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	17.16	14.75	12.95	32.39	9.8	8.04	33.8	12.38	8.12
Merged-chr2-90749859-3	chr2	90749366	90750366	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018828, intron 2 of 16)	ORR1B1|LTR|ERVL-MaLR	4496.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	24.03	29.95	23.12	31.71	30.32	32.15	28.52	30.95	39.97
Merged-chr18-80490788-3	chr18	80490301	80491301	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21134.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	9.72	2.76	0.0	7.42	2.8	0.0	4.22	1.33	1.25
Merged-chr3-137810335-3	chr3	137809826	137810826	+	925.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-26711.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	4.58	3.69	1.85	7.42	8.86	5.63	3.17	5.75	3.75
Merged-chr7-125638959-3	chr7	125638465	125639465	+	925.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35536.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	15.45	8.29	6.47	18.89	11.66	5.63	12.67	13.27	3.75
Merged-chr16-35907641-3	chr16	35907143	35908143	+	925.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30827.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	28.03	57.14	36.07	27.66	32.19	19.29	41.19	30.07	21.86
Merged-chr3-87351193-3	chr3	87350693	87351693	+	925.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6688.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	108.69	111.97	62.9	102.56	89.1	120.57	166.88	206.05	126.78
Merged-chr3-154885704-1	chr3	154885204	154886204	+	925.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177066, intron 17 of 24)	intron (NM_177066, intron 17 of 24)	169703.0	NM_177066	435766.0	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	2.86	2.76	0.0	2.02	0.47	3.22	3.17	3.98	5.62
Merged-chr4-141300446-1	chr4	141299946	141300946	+	925.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-775.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	9.72	2.76	7.4	10.12	2.8	3.22	3.17	3.1	2.5
Merged-chr7-81212376-3	chr7	81211887	81212887	+	925.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	93.24	111.97	94.35	147.76	129.69	159.95	124.63	135.3	103.67
Merged-chr12-70471559-3	chr12	70471060	70472060	+	925.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	18406.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	38.33	35.94	27.75	31.04	36.39	28.13	43.3	36.26	23.11
Merged-chr7-142372242-3	chr7	142371733	142372733	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177265)	promoter-TSS (NM_177265)	26.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	58.92	34.56	43.47	8.1	0.47	2.41	90.83	71.63	25.61
Merged-chr4-156255162-3	chr4	156254651	156255651	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355709, intron 1 of 10)	intron (NM_001355709, intron 1 of 10)	191.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	6.29	4.61	1.85	14.17	7.46	1.61	7.39	5.75	6.25
Merged-chr16-51926844-3	chr16	51926352	51927352	+	925.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	60435.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	10.3	5.99	5.55	9.45	7.0	2.41	4.22	7.07	5.0
Merged-chr7-102246072-3	chr7	102245590	102246590	+	925.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4028.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	36.04	50.23	41.62	22.27	33.59	60.28	62.31	45.1	49.96
Merged-chr16-65629401-3	chr16	65628882	65629882	+	925.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66685.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	2.86	5.53	7.4	2.7	5.13	0.0	5.28	1.77	9.99
Merged-chr5-62521256-1	chr5	62520756	62521756	+	925.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244921.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	5.15	6.45	5.55	2.7	2.33	3.22	8.45	10.61	4.37
Merged-chr11-101143842-3	chr11	101143328	101144328	+	925.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12056.0	NM_134028	103768.0	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	6.86	6.45	3.7	25.64	14.93	4.82	14.79	12.38	5.0
Merged-chr1-155982891-1	chr1	155982391	155983391	+	925.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9636.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	6.29	1.84	13.87	8.77	4.67	12.86	54.92	63.23	21.86
Merged-chr10-37319303-3	chr10	37318800	37319800	+	925.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-180374.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	22.88	18.43	12.95	13.49	7.93	12.86	14.79	8.4	14.36
Merged-chr8-3515414-3	chr8	3514920	3515920	+	925.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015801)	promoter-TSS (NM_015801)	36.0	NM_015801	50767.0	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	14.3	17.05	25.9	20.92	15.39	39.39	21.12	20.78	25.61
Merged-chr7-118275414-3	chr7	118274904	118275904	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31497.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	18.88	21.66	21.27	20.24	18.66	14.47	31.69	16.8	5.62
Merged-chr2-32509469-3	chr2	32508975	32509975	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25884.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	16.59	11.52	5.55	26.99	12.13	15.27	22.18	15.92	6.25
Merged-chr14-60757447-3	chr14	60756944	60757944	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033272, intron 11 of 12)	intron (NM_001033272, intron 11 of 12)	-10690.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	8.01	11.98	3.7	16.19	10.26	9.65	9.51	5.75	16.24
Merged-chr15-76702154-3	chr15	76701667	76702667	+	925.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027122, exon 1 of 5)	exon (NM_027122, exon 1 of 5)	625.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	22.31	27.65	59.2	27.66	30.79	53.05	46.47	38.91	30.6
Merged-chr15-53137561-3	chr15	53137041	53138041	+	925.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	L2c|LINE|L2	208642.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	12.01	9.22	5.55	14.84	17.73	19.29	11.62	2.21	3.12
Merged-chr9-121636384-3	chr9	121635881	121636881	+	925.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026915, intron 1 of 5)	intron (NM_026915, intron 1 of 5)	5212.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	12.01	10.14	4.62	9.45	13.06	8.04	9.51	7.52	17.49
Merged-chr6-106283881-2	chr6	106283388	106284388	+	925.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	165123.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	5.15	3.23	3.7	0.0	3.73	2.41	10.56	3.54	6.25
Merged-chr1-64929242-2	chr1	64928741	64929741	+	925.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	RMER1B|Other|Other	27583.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	18.31	24.42	27.75	28.34	18.19	37.78	17.96	30.07	18.11
Merged-chr15-25623151-3	chr15	25622658	25623658	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	CpG	608.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	181.91	191.69	178.52	109.3	90.97	88.42	94.0	95.51	74.94
Merged-chr10-79889589-3	chr10	79889099	79890099	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-1254.0	NM_001329541	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	35.47	18.89	36.07	33.06	15.86	34.56	23.24	7.96	18.74
Merged-chr12-71040598-3	chr12	71040094	71041094	+	925.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081195, intron 8 of 23)	PB1|SINE|Alu	24627.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	20.02	29.49	24.97	28.34	20.99	37.78	24.29	23.88	16.24
Merged-chr13-64373870-3	chr13	64373361	64374361	+	925.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3341.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	21.17	19.81	20.35	18.89	20.99	20.09	20.07	14.15	11.87
Merged-chr17-29396347-3	chr17	29395854	29396854	+	925.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35440.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	183.63	107.36	123.94	109.98	45.72	104.49	194.34	116.29	121.78
Merged-chr14-31382576-3	chr14	31382055	31383055	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	35122.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	23.45	33.18	59.2	28.34	14.46	46.62	33.8	32.72	29.98
Merged-chr11-20958485-1	chr11	20957985	20958985	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127377.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	22.88	11.52	20.35	23.62	17.26	18.49	19.01	11.5	6.25
Merged-chr11-69995039-3	chr11	69994534	69995534	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291125)	promoter-TSS (NM_001291125)	-732.0	NM_001291125	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	149.88	119.34	89.72	96.48	58.78	80.38	147.87	152.55	68.7
Merged-chr1-133012504-1	chr1	133012004	133013004	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008575, intron 4 of 11)	intron (NM_008575, intron 4 of 11)	12912.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.0	4.15	11.1	4.05	3.73	8.84	5.28	2.21	0.0
Merged-chr4-56757489-2	chr4	56756974	56757974	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026079, intron 34 of 36)	intron (NM_026079, intron 34 of 36)	14052.0	NM_009611	11470.0	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	1.14	4.15	0.92	7.42	6.06	4.82	63.37	55.71	27.48
Merged-chr17-84334459-3	chr17	84333957	84334957	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 27 of 37)	intron (NM_183021, intron 27 of 37)	131751.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	16.59	19.81	28.67	24.96	14.93	23.31	17.96	17.24	12.49
Merged-chr13-111798147-3	chr13	111797640	111798640	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	10853.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	50.34	38.71	31.45	87.04	63.45	43.4	85.55	66.33	51.21
Merged-chr11-84619848-3	chr11	84619360	84620360	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	94200.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	1.14	7.37	1.85	1.35	1.4	0.0	1.06	1.77	3.75
Merged-chr13-100824627-1	chr13	100824127	100825127	+	925.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022885, intron 4 of 15)	intron (NM_022885, intron 4 of 15)	8800.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	4.58	3.23	5.55	4.72	9.8	6.43	1.06	11.94	3.12
Merged-chr10-84722288-3	chr10	84721794	84722794	+	925.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027423, intron 27 of 27)	intron (NM_027423, intron 27 of 27)	-33754.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	4.0	3.69	13.87	10.12	3.27	4.82	12.67	3.98	2.5
Merged-chr1-191422911-2	chr1	191422422	191423422	+	925.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25881.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	11.44	6.45	35.15	11.47	7.93	40.19	29.57	9.73	21.86
Merged-chr6-22494104-3	chr6	22493615	22494615	+	925.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138034.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	10.3	9.68	3.7	5.4	13.06	3.22	15.84	15.92	13.12
Merged-chr11-69261456-3	chr11	69260976	69261976	+	925.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24454.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	72.08	64.05	47.17	93.11	83.51	81.99	76.05	116.73	48.09
Merged-chr3-27183875-4	chr3	27183385	27184385	+	925.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	881.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	116.7	134.09	87.87	186.22	165.61	126.19	163.71	188.36	74.32
Merged-chr11-85691504-3	chr11	85691005	85692005	+	925.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	28239.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	64.07	45.16	16.65	43.86	47.12	40.99	50.7	32.28	18.11
Merged-chr6-39778683-3	chr6	39778189	39779189	+	925.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32247.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	65.21	96.76	84.17	83.66	86.3	86.81	54.92	92.86	79.94
Merged-chr11-119249172-3	chr11	119248683	119249683	+	925.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175430, intron 11 of 18)	intron (NM_175430, intron 11 of 18)	-18780.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.29	2.3	1.85	6.75	1.4	4.82	2.11	0.44	0.0
Merged-chr17-34746805-3	chr17	34746299	34747299	+	925.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2902.0	NM_009780	12268.0	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	40.04	38.25	28.67	34.41	31.72	43.4	57.03	46.87	47.46
Merged-chr11-118270425-3	chr11	118269922	118270922	+	925.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033528, intron 13 of 20)	intron (NM_001033528, intron 13 of 20)	19822.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	15.45	11.06	15.72	28.34	14.93	25.72	21.12	16.8	14.36
Merged-chr2-26604420-3	chr2	26603923	26604923	+	925.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026212)	promoter-TSS (NM_026212)	-6.0	NM_026212	67512.0	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	25.17	15.67	9.25	41.16	33.12	15.27	19.01	7.96	8.74
Merged-chr5-141014411-3	chr5	141013916	141014916	+	925.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13820.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	33.18	27.19	27.75	35.09	30.32	55.46	35.91	34.93	13.74
Merged-chr13-55430775-2	chr13	55430282	55431282	+	925.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3978.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	33.18	43.31	27.75	28.34	16.79	29.74	61.26	69.86	51.21
Merged-chr2-32710588-3	chr2	32710086	32711086	+	925.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130860, intron 2 of 6)	intron (NM_130860, intron 2 of 6)	2198.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	21.74	15.67	24.05	21.59	20.99	42.6	19.01	12.82	19.98
Merged-chr3-34020552-2	chr3	34020050	34021050	+	925.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	CpG	471.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	266.0	205.51	196.09	224.68	179.14	161.56	233.42	185.27	148.64
Merged-chr13-64308189-3	chr13	64307708	64308708	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	MTD|LTR|ERVL-MaLR	4502.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	46.91	50.23	52.72	49.93	53.18	50.64	33.8	30.95	19.98
Merged-chr17-81538356-3	chr17	81537862	81538862	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	ORR1E|LTR|ERVL-MaLR	200025.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	37.76	47.92	49.95	32.39	24.72	32.15	45.42	29.63	28.1
Merged-chr6-55167176-3	chr6	55166613	55167613	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7877.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	8.01	8.75	12.95	10.12	8.4	11.25	7.39	4.42	4.37
Merged-chr12-79813926-3	chr12	79813407	79814407	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	110826.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	32.61	28.57	49.02	41.16	20.06	37.78	66.54	61.02	33.72
Merged-chr2-29629519-1	chr2	29629019	29630019	+	925.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	9799.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	7.44	7.83	0.0	2.7	1.87	3.22	9.51	2.21	2.5
Merged-chr2-128967860-3	chr2	128967392	128968392	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178404, intron 1 of 11)	GC_rich|Low_complexity|Low_complexity	490.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	366.69	353.88	320.96	398.08	354.08	270.07	376.0	302.88	219.83
Merged-chr6-34956443-3	chr6	34955944	34956944	+	925.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 4 of 7)	intron (NM_001025573, intron 4 of 7)	21555.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	6.29	4.61	2.77	3.37	4.2	0.0	6.34	9.73	3.75
Merged-chr10-93889801-3	chr10	93889252	93890252	+	925.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019648, exon 2 of 12)	5' UTR (NM_019648, exon 2 of 12)	1450.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	50.91	43.31	43.47	65.45	69.04	55.46	67.6	64.56	47.46
Merged-chr16-44242785-3	chr16	44242201	44243201	+	925.279358	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198034, intron 24 of 24)	intron (NM_198034, intron 24 of 24)	69304.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	14.3	7.83	0.0	13.49	7.93	5.63	29.57	22.11	23.73
Merged-chr5-134690464-3	chr5	134689973	134690973	+	925.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1883.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	7.44	10.6	20.35	15.52	7.0	19.29	24.29	24.76	23.11
Merged-chr10-80215299-3	chr10	80214795	80215795	+	925.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-11303.0	NM_023431	68114.0	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	8.58	5.99	0.0	6.75	3.27	6.43	2.11	2.21	13.74
Merged-chrX-61723230-4	chrX	61722740	61723740	+	925.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13624.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	33.18	46.54	32.37	43.18	54.11	61.09	104.56	107.0	63.7
Merged-chr17-8199237-3	chr17	8198726	8199726	+	925.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33708.0	NM_201230	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	20.02	15.67	10.17	24.29	10.73	14.47	8.45	5.75	5.0
Merged-chr7-141549647-2	chr7	141549139	141550139	+	925.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9782.0	NM_001142681	68038.0	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	20.59	24.88	24.05	36.43	23.33	63.5	20.07	21.22	36.85
Merged-chr9-44213693-3	chr9	44213201	44214201	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	20345.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	42.33	39.63	47.17	46.56	38.72	46.62	25.35	22.99	16.86
Merged-chr11-119944791-3	chr11	119944298	119945298	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	1706.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	49.2	24.42	18.5	57.35	31.26	19.29	31.69	25.2	22.48
Merged-chr15-81024054-3	chr15	81023554	81024554	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 4 of 13)	intron (NM_001082536, intron 4 of 13)	46289.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	22.88	14.75	26.82	10.12	15.39	12.86	13.73	18.57	13.74
Merged-chr3-88593418-3	chr3	88592920	88593920	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13812.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	25.17	25.8	15.72	24.96	25.66	47.42	17.96	21.67	24.98
Merged-chr14-27114838-3	chr14	27114334	27115334	+	925.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-29159.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	29.17	23.96	19.42	43.18	34.99	41.8	42.25	16.36	9.99
Merged-chr5-35755527-3	chr5	35755028	35756028	+	925.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2352.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	6.86	5.07	0.92	8.1	2.33	7.23	8.45	4.86	5.62
Merged-chr5-117360740-3	chr5	117360229	117361229	+	925.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	3424.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	40.62	30.41	31.45	56.68	40.12	38.58	48.58	31.39	19.36
Merged-chr2-118546385-3	chr2	118545874	118546874	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 2 of 3)	intron (NM_001331221, intron 2 of 3)	1225.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	45.19	39.17	32.37	42.51	26.12	26.53	47.53	58.37	26.23
Merged-chr7-67444786-3	chr7	67444198	67445198	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71840.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	65.21	66.81	59.2	66.8	44.32	74.75	69.71	52.18	48.09
Merged-chr6-136465207-3	chr6	136464720	136465720	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-49651.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	94.39	140.54	93.42	113.35	133.42	89.22	115.12	143.26	53.71
Merged-chr14-69804860-3	chr14	69804371	69805371	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	674.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	57.21	87.09	74.0	85.69	89.57	99.67	108.79	110.98	81.81
Merged-chr11-107466164-3	chr11	107465691	107466691	+	925.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	B4|SINE|B4	4529.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	52.06	40.55	50.87	66.12	38.72	51.44	83.44	53.06	38.1
Merged-chr3-75499123-3	chr3	75498635	75499635	+	925.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57717.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	5.15	9.22	5.55	2.02	3.27	3.22	3.17	3.98	3.12
Merged-chr2-152805039-3	chr2	152804510	152805510	+	925.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	23479.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	152.17	127.18	104.52	144.39	118.03	136.64	133.08	116.73	55.58
Merged-chr8-4524633-3	chr8	4524118	4525118	+	925.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026058, exon 11 of 11)	3' UTR (NM_026058, exon 11 of 11)	31213.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	21.17	13.36	19.42	14.17	10.26	28.94	16.9	11.94	16.24
Merged-chr11-20712381-2	chr11	20711873	20712873	+	925.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 2 of 8)	intron (NM_181411, intron 2 of 8)	29183.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	51.48	56.22	31.45	49.25	51.78	40.99	63.37	58.37	28.1
Merged-chr10-67712798-3	chr10	67712301	67713301	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140842.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	153.88	141.0	81.4	180.15	102.63	87.61	105.62	141.49	84.94
Merged-chr5-99254063-3	chr5	99253538	99254538	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1111.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	169.33	193.07	169.27	151.14	125.49	163.17	166.88	207.82	124.28
Merged-chr19-4214716-3	chr19	4214246	4215246	+	925.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310039, intron 1 of 2)	CpG	357.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	144.16	104.6	119.32	116.05	113.36	110.12	102.45	63.23	39.97
Merged-chr16-50763343-3	chr16	50762854	50763854	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-20055.0	NR_131006	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	5.72	16.13	17.57	12.14	7.0	11.25	8.45	21.22	10.62
Merged-chr4-82513308-3	chr4	82512843	82513843	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137202, intron 1 of 1)	CpG	5354.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	8.01	2.3	0.92	4.05	3.27	0.0	3.17	0.88	1.25
Merged-chr8-75193238-3	chr8	75192756	75193756	+	925.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-20688.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	9.72	6.91	1.85	12.14	6.53	15.27	11.62	6.63	0.0
Merged-chr19-44394146-3	chr19	44393634	44394634	+	925.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009127)	TTS (NM_009127)	13575.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	37.18	37.78	18.5	71.52	58.78	36.97	73.93	66.33	25.61
Merged-chr13-21945221-3	chr13	21944717	21945717	+	925.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360886, intron 1 of 5)	CpG	117.0	NM_001360886	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	22.31	11.98	7.4	28.34	12.6	6.43	17.96	7.07	5.0
Merged-chr8-88650351-4	chr8	88649855	88650855	+	925.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	3008.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	36.61	44.24	53.65	60.72	41.52	80.38	49.64	32.72	35.6
Merged-chr4-133751751-3	chr4	133751268	133752268	+	925.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	1843.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	141.87	117.96	49.02	95.81	83.97	86.81	86.61	98.16	52.46
Merged-chr8-46899294-1	chr8	46898794	46899794	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87593.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	2.29	7.83	9.25	2.7	3.27	8.84	1.06	3.54	2.5
Merged-chr16-95840039-3	chr16	95839523	95840523	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	58690.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	19.45	7.37	0.0	29.69	16.33	7.23	10.56	13.27	3.12
Merged-chr13-92030904-2	chr13	92030397	92031397	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42855.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	1.72	3.23	8.32	29.01	21.46	17.68	12.67	10.61	9.37
Merged-chr14-34314601-1	chr14	34314101	34315101	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008133, intron 1 of 12)	intron (NM_008133, intron 1 of 12)	3874.0	NM_008133	14661.0	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	14.3	20.27	21.27	12.14	9.8	12.86	24.29	13.71	16.24
Merged-chr10-113027497-1	chr10	113026997	113027997	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98471.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	1.72	1.84	0.0	1.35	0.93	1.61	1.06	0.44	0.0
Merged-chr9-83727712-1	chr9	83727212	83728212	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36237.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	4.58	3.23	2.77	1.35	0.93	0.0	4.22	0.44	3.12
Merged-chr18-39763701-3	chr18	39763194	39764194	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9803.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	16.02	12.9	5.55	14.17	12.6	12.86	16.9	16.8	14.99
Merged-chr11-96404507-1	chr11	96404007	96405007	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38749.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	8.01	12.9	0.0	16.87	34.52	33.76	4.22	2.65	1.87
Merged-chr9-70007153-1	chr9	70006653	70007653	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-5395.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	15.45	28.57	10.17	22.27	31.72	24.92	32.74	17.24	14.36
Merged-chr11-68468190-3	chr11	68467659	68468659	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-34860.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	34.32	27.19	18.5	75.57	63.45	41.8	31.69	14.59	11.87
Merged-chr4-81673942-1	chr4	81673442	81674442	+	925.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186929.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	4.0	5.07	4.62	6.07	5.6	4.82	4.22	3.1	2.5
Merged-chrUn_GL456239-36269-1	chrUn_GL456239	35769	36769	+	925.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	10.56	4.86	0.0
Merged-chr11-53780267-2	chr11	53779672	53780672	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	9699.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	19.45	22.12	44.4	10.12	3.27	28.94	23.24	17.24	16.86
Merged-chr8-36994362-3	chr8	36993859	36994859	+	925.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039220, exon 1 of 1)	exon (NM_001039220, exon 1 of 1)	784.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	56.63	94.46	51.8	98.51	85.84	77.16	60.2	73.4	63.08
Merged-chr19-29484758-3	chr19	29484184	29485184	+	924.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37303.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	58.35	61.75	56.42	80.97	76.51	93.24	79.21	110.1	57.46
Merged-chr6-97509612-3	chr6	97509116	97510116	+	924.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-21796.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	66.36	89.85	92.5	32.39	41.52	59.48	156.32	164.49	74.32
Merged-chr4-126401157-2	chr4	126400650	126401650	+	924.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153402, intron 5 of 18)	intron (NM_153402, intron 5 of 18)	28392.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	13.16	16.13	24.97	8.1	15.86	8.04	8.45	12.38	5.62
Merged-chr11-22809543-3	chr11	22809024	22810024	+	924.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50211.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	34.32	28.57	43.47	34.41	20.99	25.72	38.02	48.64	37.47
Merged-chr7-19845300-3	chr7	19844806	19845806	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6697.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	47.48	30.41	19.42	58.03	33.59	26.53	32.74	23.43	31.85
Merged-chr3-87369365-3	chr3	87368867	87369867	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 5 of 5)	intron (NM_009690, intron 5 of 5)	-7020.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	13.73	20.74	28.67	13.49	11.66	32.15	26.4	32.72	30.6
Merged-chr13-100451329-3	chr13	100450812	100451812	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008670, intron 1 of 15)	ID_B1|SINE|B4	1552.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	12.59	24.88	14.8	8.77	10.26	20.09	63.37	76.49	60.58
Merged-chr4-95048313-3	chr4	95047834	95048834	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010591)	TTS (NM_010591)	3888.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	24.6	11.52	7.4	10.12	3.27	8.04	8.45	4.42	2.5
Merged-chr19-53904088-3	chr19	53903509	53904509	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168491, intron 1 of 11)	CpG	658.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	121.85	111.05	123.02	112.68	92.84	93.24	134.14	98.6	59.33
Merged-chr5-139734331-3	chr5	139733849	139734849	+	924.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1984.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	68.07	56.68	46.25	57.35	40.59	33.76	115.12	109.66	54.96
Merged-chr7-46607899-3	chr7	46607406	46608406	+	924.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	31901.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	18.88	25.8	12.95	51.95	44.78	24.92	48.58	38.91	12.49
Merged-chr6-52204522-3	chr6	52204025	52205025	+	924.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010453)	promoter-TSS (NM_010453)	62.0	NM_010453	15402.0	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	7.44	16.59	3.7	4.05	3.27	3.22	25.35	4.42	5.0
Merged-chr18-34885062-3	chr18	34884526	34885526	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23819.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	17.73	10.6	5.55	18.89	12.6	7.23	15.84	11.05	5.0
Merged-chr9-116350906-2	chr9	116350423	116351423	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	161743.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	6.29	2.3	1.85	10.12	3.73	0.0	4.22	1.33	2.5
Merged-chr13-5870062-3	chr13	5869543	5870543	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	8554.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	80.09	92.16	52.72	89.74	65.31	61.89	74.99	63.23	60.58
Merged-chr1-82761631-3	chr1	82761139	82762139	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025453, intron 2 of 3)	MIR|SINE|MIR	6817.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	37.76	48.38	49.95	38.46	34.52	70.73	52.81	39.35	34.97
Merged-chr19-46523656-3	chr19	46523157	46524157	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	22009.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	311.2	195.83	149.84	348.15	176.81	192.91	220.74	246.73	131.78
Merged-chr13-113032594-1	chr13	113032094	113033094	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	6.86	2.76	0.0	2.7	0.93	0.0	3.17	0.88	6.25
Merged-chr5-130278321-3	chr5	130277812	130278812	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153350, intron 8 of 15)	intron (NR_153350, intron 8 of 15)	21275.0	NM_001015876	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	12.59	27.19	25.9	20.92	29.39	57.07	25.35	22.99	24.98
Merged-chr7-80387248-3	chr7	80386745	80387745	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010194, exon 2 of 19)	exon (NM_010194, exon 2 of 19)	701.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	128.14	106.44	167.42	107.28	111.03	163.97	154.2	198.98	125.53
Merged-chr7-19180933-3	chr7	19180433	19181433	+	924.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162996)	promoter-TSS (NM_001162996)	-237.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	9.15	2.3	5.55	9.45	2.8	1.61	2.11	4.42	2.5
Merged-chr2-145730694-3	chr2	145730166	145731166	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	29471.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	16.02	9.22	0.0	12.82	8.4	5.63	7.39	2.21	5.0
Merged-chr4-148772945-3	chr4	148772446	148773446	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31446.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	5.15	9.22	0.0	4.72	7.93	3.22	3.17	3.54	7.49
Merged-chr9-56506126-3	chr9	56505630	56506630	+	924.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87511.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	14.87	17.05	21.27	9.45	16.79	29.74	4.22	6.19	9.99
Merged-chr15-100153234-3	chr15	100152783	100153783	+	924.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 5 of 37)	intron (NM_001159361, intron 5 of 37)	-1113.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	43.48	28.11	16.65	36.43	35.92	19.29	24.29	45.1	16.24
Merged-chr5-105652095-2	chr5	105651585	105652585	+	924.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47884.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	45.19	51.15	12.02	60.05	39.65	47.42	10.56	13.27	5.0
Merged-chr9-104581798-1	chr9	104581298	104582298	+	924.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	12315.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	24.03	19.35	20.35	9.45	24.72	19.29	5.28	4.42	3.12
Merged-chr1-80757054-3	chr1	80756549	80757549	+	924.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	1504.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	70.36	57.6	23.12	56.68	50.85	20.9	70.76	45.54	42.47
Merged-chr2-71020016-3	chr2	71019526	71020526	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	-1652.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	28.03	42.85	24.05	22.27	17.26	6.43	12.67	19.46	3.12
Merged-chr16-52182233-3	chr16	52181718	52182718	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 13 of 17)	intron (NM_001033238, intron 13 of 17)	150669.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.3	14.75	10.17	12.14	7.46	8.84	15.84	15.48	5.0
Merged-chr11-75513488-3	chr11	75513004	75514004	+	924.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004157)	promoter-TSS (NM_001004157)	-37.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	32.04	49.3	46.25	37.78	24.72	46.62	39.08	40.24	39.35
Merged-chr3-79181368-3	chr3	79180844	79181844	+	924.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31575.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	76.66	58.52	42.55	114.03	72.31	53.85	185.89	188.36	76.19
Merged-chr15-80025897-3	chr15	80025391	80026391	+	924.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11083.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	34.9	14.28	18.5	43.18	19.13	18.49	9.51	4.86	3.75
Merged-chr5-100608092-2	chr5	100607598	100608598	+	924.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35893.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	30.89	21.2	35.15	27.66	18.66	19.29	57.03	41.56	26.23
Merged-chr1-77442205-3	chr1	77441717	77442717	+	924.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	54551.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	22.88	29.95	52.72	20.92	27.99	48.23	16.9	22.55	18.11
Merged-chr14-27356329-3	chr14	27355832	27356832	+	924.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5057.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	72.08	99.53	61.05	91.76	69.51	90.02	108.79	111.87	90.56
Merged-chr15-27616364-3	chr15	27615898	27616898	+	924.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013792, exon 4 of 7)	exon (NM_001013792, exon 4 of 7)	14295.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	14.87	15.67	5.55	16.19	13.06	27.33	7.39	8.84	9.99
Merged-chr10-56115312-3	chr10	56114777	56115777	+	924.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163833, exon 2 of 2)	exon (NM_001163833, exon 2 of 2)	8360.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	1.72	4.15	5.55	5.4	3.73	4.82	7.39	5.31	1.25
Merged-chr12-85479554-9	chr12	85479080	85480080	+	924.5925900000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5690.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	16.02	5.99	11.1	8.1	4.67	7.23	1.06	1.33	5.62
Merged-chr19-44416383-2	chr19	44415879	44416879	+	924.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	9.72	1.38	2.77	8.77	9.8	18.49	25.35	16.8	6.25
Merged-chr10-30678305-3	chr10	30677809	30678809	+	924.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-22442.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	34.9	36.86	34.22	42.51	25.19	41.8	38.02	42.45	29.98
Merged-chr5-34242510-4	chr5	34242033	34243033	+	924.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	45791.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	42.33	34.1	39.77	78.94	75.57	33.76	24.29	16.36	9.99
Merged-chr19-57611632-5	chr19	57611116	57612116	+	924.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181415, exon 1 of 29)	exon (NM_181415, exon 1 of 29)	582.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	70.36	41.01	14.8	55.33	29.86	42.6	42.25	15.92	14.99
Merged-chr8-95141843-3	chr8	95141375	95142375	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	665.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	65.79	67.27	72.15	56.0	62.05	69.13	55.98	65.88	54.96
Merged-chr17-44029833-3	chr17	44029355	44030355	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357742, intron 4 of 4)	intron (NM_001357742, intron 4 of 4)	-48947.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	48.62	15.21	3.7	7.42	5.13	4.02	1.06	5.75	7.49
Merged-chr12-85492280-3	chr12	85491764	85492764	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18374.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	21.74	10.14	11.1	16.87	10.26	24.11	28.52	11.94	14.99
Merged-chr3-96251339-3	chr3	96250851	96251851	+	924.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4651.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	90.38	101.37	63.82	99.18	84.9	81.18	145.75	131.32	64.95
Merged-chr14-55764514-4	chr14	55763999	55764999	+	924.537476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1463.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	35.47	36.86	40.7	22.27	30.32	35.37	36.97	48.64	24.36
Merged-chr6-57803319-2	chr6	57802809	57803809	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	Lx8|LINE|L1	21816.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	2.29	3.23	3.7	9.45	9.33	4.02	8.45	0.44	3.75
Merged-chr4-150673031-2	chr4	150672529	150673529	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20855.0	NM_173774	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	9.72	2.3	3.7	4.72	2.8	3.22	4.22	0.44	0.0
Merged-chr19-53554651-2	chr19	53554159	53555159	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25341.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	5.15	2.76	14.8	10.12	7.93	8.04	6.34	1.77	4.37
Merged-chr14-101503789-1	chr14	101503289	101504289	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 3 of 18)	intron (NM_001081278, intron 3 of 18)	105402.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.15	8.29	0.0	8.77	7.93	3.22	5.28	2.21	6.25
Merged-chrX-7604278-1	chrX	7603778	7604778	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138603, exon 2 of 17)	exon (NM_138603, exon 2 of 17)	1142.0	NM_138603	54638.0	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	4.58	23.5	11.1	16.19	16.79	12.86	32.74	31.39	23.11
Merged-chr15-66803971-1	chr15	66803471	66804471	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27858.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	7.44	13.82	9.25	19.57	14.0	19.29	21.12	7.07	9.99
Merged-chr11-116100578-3	chr11	116100073	116101073	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9662.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	50.34	58.98	51.8	46.56	25.66	28.13	31.69	36.26	25.61
Merged-chr15-100762095-2	chr15	100761606	100762606	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021530, intron 1 of 24)	CpG	359.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	49.2	26.73	31.45	22.27	10.26	12.86	24.29	23.43	17.49
Merged-chr7-51982048-1	chr7	51981548	51982548	+	924.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	23666.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	4.0	2.76	1.85	5.4	2.8	5.63	1.06	3.98	6.25
Merged-chr11-45546165-4	chr11	45545699	45546699	+	924.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261884.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	38.9	45.16	43.47	53.3	33.59	50.64	32.74	37.14	24.36
Merged-chr18-38415762-3	chr18	38415299	38416299	+	924.460327	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3108.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	72.08	63.13	32.37	91.09	72.31	49.83	28.52	61.46	37.47
Merged-chr16-33400378-3	chr16	33399875	33400875	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358569)	promoter-TSS (NM_001358569)	-70.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	38.33	31.33	21.27	38.46	34.99	27.33	38.02	29.18	15.61
Merged-chr1-90973440-3	chr1	90972941	90973941	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3821.0	NM_008998	19329.0	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	8.01	5.53	1.85	8.77	4.67	0.8	3.17	7.52	6.25
Merged-chr7-107609814-3	chr7	107609311	107610311	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	2967.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	14.3	10.14	7.4	14.17	4.67	0.0	12.67	7.07	7.49
Merged-chrX-107144138-3	chrX	107143629	107144629	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-4798.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	36.04	24.42	24.05	64.1	37.79	49.03	48.58	51.73	18.74
Merged-chr19-43801621-3	chr19	43801105	43802105	+	924.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 7 of 31)	intron (NM_013806, intron 7 of 31)	19297.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	6.29	6.45	8.32	14.84	8.4	12.06	11.62	5.75	9.99
Merged-chr5-135478208-3	chr5	135477710	135478710	+	924.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	66912.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	152.74	168.19	130.42	163.96	115.23	126.19	121.46	193.67	116.16
Merged-chr3-20348390-2	chr3	20347886	20348886	+	924.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175086, intron 1 of 1)	MusHAL1|LINE|L1	18791.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	1.14	4.61	1.85	2.02	9.8	4.82	8.45	7.07	6.25
Merged-chr19-60889256-2	chr19	60888763	60889763	+	924.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018869)	promoter-TSS (NM_018869)	-486.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	36.04	58.52	51.8	62.75	65.78	144.68	28.52	36.7	38.72
Merged-chr7-121280392-2	chr7	121279882	121280882	+	924.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-111914.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	11.44	18.43	13.87	46.56	36.39	58.68	25.35	26.53	33.72
Merged-chr6-86503691-3	chr6	86503190	86504190	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15463.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	93.24	90.31	58.27	70.85	62.05	39.39	76.05	80.92	64.95
Merged-chr2-164085899-3	chr2	164085385	164086385	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	11707.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	41.19	47.0	36.07	33.74	34.06	33.76	22.18	34.49	21.23
Merged-chr6-124202357-3	chr6	124201860	124202860	+	924.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001104642, intron 3 of 5)	intron (NM_001104642, intron 3 of 5)	29424.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	2.86	6.91	3.7	6.07	7.0	3.22	5.28	1.77	3.12
Merged-chr1-135669994-3	chr1	135669503	135670503	+	924.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50060.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	25.17	14.28	17.57	54.65	33.12	39.39	30.63	18.13	11.24
Merged-chr9-123935566-3	chr9	123935053	123936053	+	924.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33139.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	70.36	80.18	66.6	80.29	53.65	96.45	48.58	54.39	51.84
Merged-chr12-85146535-2	chr12	85146033	85147033	+	924.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	4731.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	2.86	1.84	3.7	6.07	1.4	0.8	3.17	0.88	3.75
Merged-chr12-12301387-2	chr12	12300881	12301881	+	924.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	39242.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	143.01	172.79	145.22	151.81	102.63	118.96	183.78	152.55	104.92
Merged-chr9-90107142-2	chr9	90106638	90107638	+	924.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	7682.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	40.62	62.67	15.72	47.9	46.18	47.42	65.48	67.21	27.48
Merged-chr2-155826074-2	chr2	155825571	155826571	+	924.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010579, intron 2 of 5)	intron (NM_010579, intron 2 of 5)	854.0	NM_010579	16418.0	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	137.86	143.76	116.54	88.39	80.24	83.59	133.08	114.08	84.94
Merged-chr15-78594982-3	chr15	78594497	78595497	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-2050.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	17.73	17.05	16.65	22.27	8.86	6.43	15.84	10.17	13.12
Merged-chr9-35038506-3	chr9	35038012	35039012	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78216.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	60.07	75.11	38.85	54.65	49.92	37.78	77.1	80.03	31.85
Merged-chr7-89269906-3	chr7	89269407	89270407	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 4 of 14)	intron (NM_001360746, intron 4 of 14)	68880.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	21.17	19.35	17.57	31.71	21.93	44.21	36.97	30.07	23.73
Merged-chr2-4593632-3	chr2	4593130	4594130	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	33876.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	8.58	9.68	5.55	7.42	6.53	13.66	9.51	11.5	11.24
Merged-chr18-84849906-3	chr18	84849417	84850417	+	924.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1421.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	61.78	52.99	52.72	75.57	69.98	66.71	48.58	49.08	34.35
Merged-chr9-44587472-2	chr9	44586974	44587974	+	924.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17418.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	4.58	5.07	8.32	10.8	1.4	4.82	12.67	4.42	4.37
Merged-chr12-112761293-1	chr12	112760793	112761793	+	924.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	638.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	144.16	141.92	140.59	82.32	103.1	121.37	192.23	175.54	76.19
Merged-chr11-82100401-3	chr11	82099908	82100908	+	924.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1437.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	45.76	30.87	45.32	71.52	39.65	38.58	111.96	82.24	34.35
Merged-chr12-112688623-3	chr12	112688192	112689192	+	924.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9852.0	NM_001100460	382639.0	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	20.02	6.45	3.7	16.19	16.33	6.43	10.56	3.1	0.62
Merged-chr12-100505627-3	chr12	100505123	100506123	+	924.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	15199.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	17.16	10.6	17.57	13.49	10.26	8.84	10.56	6.19	21.23
Merged-chr2-52931573-2	chr2	52931080	52932080	+	924.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	ORR1B2|LTR|ERVL-MaLR	73712.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.58	8.75	1.85	12.14	6.06	9.65	8.45	7.52	6.25
Merged-chr1-55488462-3	chr1	55487958	55488958	+	924.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	82512.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	9.72	5.53	1.85	7.42	12.13	4.02	5.28	5.75	3.75
Merged-chr12-85490562-3	chr12	85490065	85491065	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16675.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	78.37	103.68	117.47	116.73	96.1	154.33	123.57	116.73	111.79
Merged-chr17-83830734-3	chr17	83830250	83831250	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025325)	TTS (NM_025325)	16040.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	15.45	7.37	16.65	12.82	5.6	4.82	14.79	15.48	4.37
Merged-chr11-49236058-3	chr11	49235569	49236569	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8122.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	53.77	56.22	28.67	43.86	23.79	46.62	28.52	37.58	21.86
Merged-chr2-125123211-3	chr2	125122728	125123728	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162418, intron 1 of 14)	CpG	432.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	57.21	37.78	16.65	64.1	34.52	28.13	58.09	38.91	24.98
Merged-chr5-16047534-3	chr5	16047020	16048020	+	924.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	112829.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	7.44	6.45	24.05	6.75	11.2	12.06	15.84	29.18	11.24
Merged-chr1-88631677-2	chr1	88631167	88632167	+	924.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70524.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	5.15	10.14	12.02	16.19	7.93	9.65	11.62	3.1	6.87
Merged-chr12-35132982-3	chr12	35132490	35133490	+	924.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 21 of 25)	intron (NM_001014973, intron 21 of 25)	61907.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	66.36	62.21	46.25	43.86	46.65	20.9	71.82	96.39	32.48
Merged-chr3-115714364-1	chr3	115713864	115714864	+	924.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007901, intron 1 of 1)	intron (NM_007901, intron 1 of 1)	691.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	13.16	10.14	5.55	18.22	22.86	38.58	9.51	5.75	3.12
Merged-chr5-72188313-3	chr5	72187808	72188808	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15021.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	8.58	15.67	7.4	15.52	12.13	23.31	13.73	11.94	7.49
Merged-chr12-79072716-3	chr12	79072220	79073220	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181073, intron 20 of 28)	intron (NM_181073, intron 20 of 28)	16950.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	1.14	4.15	0.0	4.05	4.67	4.82	3.17	0.44	5.0
Merged-chr11-68441152-3	chr11	68440650	68441650	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	9025.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	14.3	14.28	23.12	14.17	9.33	15.27	17.96	7.96	8.12
Merged-chr9-55311740-3	chr9	55311235	55312235	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15178.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	5.15	8.29	12.95	12.82	3.73	8.84	4.22	6.63	5.0
Merged-chr2-143867506-3	chr2	143867076	143868076	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4403.0	NM_001291061	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	17.16	6.91	9.25	14.84	9.33	1.61	21.12	11.5	3.75
Merged-chr3-87526412-3	chr3	87525929	87526929	+	924.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286844, intron 1 of 4)	intron (NM_001286844, intron 1 of 4)	851.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	163.61	140.54	142.44	141.02	130.62	118.16	79.21	91.53	54.33
Merged-chr10-80744472-3	chr10	80743986	80744986	+	924.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2211.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	27.46	21.2	23.12	33.06	13.53	25.72	35.91	30.07	23.11
Merged-chr2-127362598-3	chr2	127362100	127363100	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-686.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	6.29	1.84	1.85	8.1	0.93	0.0	8.45	2.21	1.25
Merged-chr2-25582583-3	chr2	25582076	25583076	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001024616)	TTS (NM_001024616)	-2477.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	66.36	47.92	24.97	122.8	101.7	80.38	66.54	110.98	62.45
Merged-chr9-56266683-3	chr9	56266185	56267185	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-105615.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	53.77	52.99	40.7	57.35	63.91	49.83	28.52	45.1	33.72
Merged-chr13-34332922-3	chr13	34332440	34333440	+	924.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	12242.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	19.45	10.6	4.62	24.96	15.39	7.23	14.79	7.96	3.75
Merged-chr5-125189728-4	chr5	125189203	125190203	+	924.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10489.0	NM_001253904	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	19.45	16.13	14.8	20.92	13.06	11.25	14.79	11.05	11.24
Merged-chr11-94328414-3	chr11	94327937	94328937	+	924.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027799, intron 1 of 4)	CpG	436.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	179.62	135.01	122.09	182.85	114.76	147.09	184.83	127.34	79.94
Merged-chr10-80663782-3	chr10	80663273	80664273	+	924.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6702.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	46.91	32.72	16.65	60.72	37.32	44.21	43.3	55.27	10.62
Merged-chr5-124476007-3	chr5	124475507	124476507	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	2228.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	224.82	155.28	140.59	205.79	96.1	151.11	222.86	202.07	109.92
Merged-chr10-128626376-3	chr10	128625896	128626896	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013765, intron 1 of 3)	CpG	110.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	108.12	128.1	112.84	105.26	102.17	91.63	136.25	122.92	66.2
Merged-chr7-142284829-3	chr7	142284355	142285355	+	924.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-10492.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	17.73	20.74	25.9	18.89	24.26	27.33	21.12	15.03	20.61
Merged-chr7-19023554-3	chr7	19023031	19024031	+	924.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026605)	promoter-TSS (NM_026605)	8.0	NM_008260	15377.0	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	9.72	5.07	1.85	2.02	3.27	1.61	1.06	0.88	6.25
Merged-chrX-47391704-3	chrX	47391203	47392203	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	500910.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	2.29	5.99	11.1	9.45	10.26	8.04	12.67	4.42	17.49
Merged-chr3-55101331-3	chr3	55100823	55101823	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D1|LTR|ERVK	-10785.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	9.15	0.46	4.62	0.67	1.4	0.0	2.11	1.77	2.5
Merged-chr6-134791903-2	chr6	134791397	134792397	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-463.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	296.32	342.36	206.26	273.94	300.43	244.35	289.39	318.8	173.62
Merged-chr17-5232467-1	chr17	5231967	5232967	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	186300.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.29	6.91	5.55	5.4	1.87	8.84	5.28	4.42	1.25
Merged-chr5-88399987-3	chr5	88399500	88400500	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23892.0	NM_027793	71421.0	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	2.86	3.69	0.0	5.4	2.33	3.22	4.22	3.98	2.5
Merged-chr11-17159920-3	chr11	17159411	17160411	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	CpG	613.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	243.12	285.23	247.89	187.57	243.05	259.62	227.08	229.04	138.02
Merged-chr12-85914501-1	chr12	85914001	85915001	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 19 of 32)	intron (NM_001347395, intron 19 of 32)	89551.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	12.01	8.29	15.72	20.92	16.79	6.43	13.73	5.75	11.24
Merged-chr15-98108494-3	chr15	98107993	98108993	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163487)	promoter-TSS (NM_001163487)	22.0	NM_001163487	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	9.72	10.14	12.95	18.89	11.2	4.02	11.62	1.77	3.12
Merged-chr13-23517230-3	chr13	23516752	23517752	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	-13792.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	59.49	109.67	36.07	53.98	55.98	23.31	80.27	87.55	44.34
Merged-chr13-93995573-1	chr13	93995073	93996073	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-62223.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	10.87	11.52	1.85	11.47	16.79	25.72	9.51	8.84	14.36
Merged-chr18-69680829-1	chr18	69680329	69681329	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 17 of 19)	intron (NM_001361128, intron 17 of 19)	-244730.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	14.87	4.15	9.25	16.19	7.46	9.65	9.51	5.31	6.25
Merged-chr13-6636733-1	chr13	6636233	6637233	+	924.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	intron (NM_019703, intron 1 of 21)	12038.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	9.72	6.45	5.55	2.02	4.67	8.04	8.45	4.86	5.62
Merged-chr7-129331980-3	chr7	129331469	129332469	+	924.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	74875.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	16.59	23.5	9.25	21.59	26.59	29.74	24.29	22.55	17.49
Merged-chr1-166137710-3	chr1	166137207	166138207	+	923.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360925, intron 1 of 5)	intron (NM_001360925, intron 1 of 5)	7486.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	13.73	7.37	4.62	22.27	21.93	16.88	14.79	5.75	6.25
Merged-chr11-5511556-3	chr11	5511052	5512052	+	923.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9089.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	129.86	178.32	95.27	150.46	161.88	114.14	173.21	237.89	110.54
Merged-chr17-43040738-3	chr17	43040232	43041232	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	RSINE1|SINE|B4	24177.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	82.95	69.12	37.92	91.09	63.91	80.38	48.58	54.83	46.22
Merged-chr3-10009594-3	chr3	10009093	10010093	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2992.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	2.29	0.0	12.02	5.4	1.87	4.02	3.17	1.33	5.0
Merged-chr5-116011890-3	chr5	116011397	116012397	+	923.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12531.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	12.59	10.6	11.1	44.53	23.33	29.74	17.96	17.69	22.48
Merged-chr12-108333634-2	chr12	108333135	108334135	+	923.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010010)	promoter-TSS (NM_010010)	-681.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	54.92	53.91	72.15	21.59	28.46	24.92	13.73	18.57	6.25
Merged-chr6-136714334-3	chr6	136713825	136714825	+	923.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 19 of 25)	MIR3|SINE|MIR	-52432.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	8.58	4.15	3.7	11.47	5.6	1.61	20.07	12.82	9.99
Merged-chr4-89129538-3	chr4	89129063	89130063	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1337.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	5.72	5.07	0.0	4.05	1.87	1.61	1.06	1.33	1.25
Merged-chr10-24911434-3	chr10	24910925	24911925	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105870)	TTS (NR_105870)	761.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	7.44	8.29	6.47	31.04	14.93	18.49	84.49	61.02	50.59
Merged-chr15-64261782-3	chr15	64261285	64262285	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	50888.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	13.16	19.35	23.12	8.1	13.53	8.04	10.56	15.92	12.49
Merged-chr3-59265058-3	chr3	59264551	59265551	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177855, exon 36 of 44)	exon (NM_177855, exon 36 of 44)	-2066.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	97.25	99.53	90.65	97.16	87.24	77.16	80.27	80.47	41.84
Merged-chr17-63493310-3	chr17	63492798	63493798	+	923.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 1 of 8)	intron (NM_015794, intron 1 of 8)	7282.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	21.17	21.2	21.27	24.29	20.53	33.76	13.73	25.2	24.36
Merged-chr13-49684149-3	chr13	49683649	49684649	+	923.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172015, intron 1 of 33)	intron (NM_172015, intron 1 of 33)	2019.0	NM_172015	105148.0	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	26.31	23.5	38.85	20.24	20.06	29.74	35.91	28.3	27.48
Merged-chr11-79520890-3	chr11	79520370	79521370	+	923.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	intron (NM_001077496, intron 1 of 1)	2892.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	166.47	181.55	106.37	124.82	90.04	72.34	137.3	140.61	113.66
Merged-chr13-97548731-3	chr13	97548246	97549246	+	923.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11254.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	40.62	45.62	49.95	53.98	46.18	68.32	50.7	49.52	39.35
Merged-chr1-134081299-3	chr1	134080790	134081790	+	923.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2135.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	4.58	10.14	3.7	8.1	5.13	7.23	20.07	11.5	10.62
Merged-chr2-90475019-3	chr2	90474518	90475518	+	923.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4156.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	33.75	35.94	27.75	45.21	28.46	41.8	49.64	25.2	23.73
Merged-chr4-108458301-2	chr4	108457795	108458795	+	923.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	71.51	66.81	29.6	80.29	62.51	54.66	87.66	93.74	51.21
Merged-chr2-112255315-2	chr2	112254799	112255799	+	923.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172521, intron 2 of 6)	intron (NM_172521, intron 2 of 6)	3992.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	5.72	5.07	1.85	8.1	3.27	12.86	4.22	3.98	1.25
Merged-chr10-91195256-3	chr10	91194758	91195758	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-23639.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	5.72	2.76	5.55	4.05	1.87	9.65	4.22	1.77	2.5
Merged-chr5-136088031-3	chr5	136087531	136088531	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	4115.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	20.59	35.48	35.15	24.29	12.6	19.29	29.57	26.09	24.98
Merged-chr17-12371459-3	chr17	12370958	12371958	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7151.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	6.29	2.76	0.92	7.42	7.93	9.65	16.9	5.75	6.87
Merged-chr7-144895980-2	chr7	144895486	144896486	+	923.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008003)	promoter-TSS (NM_008003)	-546.0	NM_008003	14170.0	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	17.16	8.29	3.7	6.07	2.8	0.0	9.51	0.44	1.25
Merged-chr8-56896533-1	chr8	56896033	56897033	+	923.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	345399.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	2.29	6.91	3.7	5.4	2.33	6.43	2.11	3.98	1.25
Merged-chr14-64637600-3	chr14	64637097	64638097	+	923.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14934.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	33.75	24.88	7.4	47.9	46.18	24.11	45.42	42.89	14.99
Merged-chr4-59806771-3	chr4	59806282	59807282	+	923.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	1132.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	106.4	107.82	85.1	159.91	180.54	154.33	136.25	159.62	59.33
Merged-chr5-117363272-3	chr5	117362751	117363751	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021539, intron 1 of 8)	intron (NM_021539, intron 1 of 8)	5946.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	57.78	52.99	80.47	76.92	52.25	69.93	46.47	32.28	24.36
Merged-chr2-116952909-3	chr2	116952412	116953412	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	52760.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	23.45	15.21	7.4	18.22	10.73	12.06	14.79	8.84	14.36
Merged-chr3-83995527-3	chr3	83995024	83996024	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	44637.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	6.86	9.22	1.85	6.75	3.27	8.04	3.17	3.54	1.25
Merged-chr17-15577524-3	chr17	15577022	15578022	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14199.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	14.3	4.15	1.85	21.59	11.2	6.43	5.28	3.54	5.62
Merged-chr5-96968741-3	chr5	96968259	96969259	+	923.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28930.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	42.9	38.25	30.52	37.11	35.92	28.94	16.9	19.01	5.0
Merged-chr2-16170594-2	chr2	16170076	16171076	+	923.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	intron (NM_001310455, intron 35 of 38)	-185728.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	15.45	16.13	5.55	18.89	15.39	8.04	20.07	16.36	8.12
Merged-chr7-35145312-1	chr7	35144812	35145812	+	923.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26019.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	8.01	5.99	5.55	14.17	7.93	3.22	7.39	7.96	3.75
Merged-chr11-97363522-3	chr11	97363030	97364030	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138657, intron 1 of 9)	intron (NM_138657, intron 1 of 9)	979.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	161.32	103.68	106.37	173.4	117.56	78.77	149.98	140.61	61.83
Merged-chr17-29082138-3	chr17	29081633	29082633	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3007.0	NR_036469	100504267.0	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	21.74	12.9	0.0	20.24	6.06	6.43	19.01	6.63	8.74
Merged-chr15-30617057-3	chr15	30616557	30617557	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	MLT1B|LTR|ERVL-MaLR	-422069.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	15.45	12.9	9.25	18.89	19.13	8.84	10.56	12.82	8.74
Merged-chr1-120443485-3	chr1	120442982	120443982	+	923.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	61542.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.58	5.53	0.0	2.7	2.33	3.22	9.51	2.65	3.75
Merged-chr6-91693645-3	chr6	91693158	91694158	+	923.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	9591.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	13.73	7.37	5.55	12.14	7.93	8.04	13.73	8.4	12.49
Merged-chr1-159198808-3	chr1	159198325	159199325	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-33375.0	NM_001360878	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	8.58	5.99	5.55	15.52	14.0	10.45	11.62	9.73	5.0
Merged-chr9-37347255-3	chr9	37346744	37347744	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081429, intron 2 of 15)	intron (NM_001081429, intron 2 of 15)	1148.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	21.17	33.64	13.87	23.62	23.33	27.33	31.69	46.43	23.73
Merged-chr13-107888699-3	chr13	107888202	107889202	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	CpG	1362.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	176.76	158.51	171.12	156.53	81.64	127.8	147.87	107.0	119.28
Merged-chr5-122280809-3	chr5	122280294	122281294	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3604.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	79.52	64.97	49.95	87.71	74.17	60.28	78.16	76.05	34.97
Merged-chr1-135688883-1	chr1	135688383	135689383	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31180.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	72.08	93.54	33.3	10.12	7.93	8.84	7.39	3.98	3.12
Merged-chr15-97312105-3	chr15	97311604	97312604	+	923.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-64817.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.72	11.98	8.32	10.8	14.0	10.45	5.28	5.31	5.0
Merged-chr15-67147536-1	chr15	67147036	67148036	+	923.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	29346.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	13.73	9.22	11.1	36.43	14.93	28.94	22.18	15.03	15.61
Merged-chr7-63755739-3	chr7	63755234	63756234	+	923.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161123.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	1.14	5.07	1.85	4.72	1.4	1.61	4.22	2.21	0.0
Merged-chr5-36751835-3	chr5	36751324	36752324	+	923.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3145.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	14.87	9.22	8.32	12.14	8.4	10.45	8.45	5.75	8.74
Merged-chr2-19038381-3	chr2	19037881	19038881	+	923.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40062.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	36.04	41.47	38.85	29.69	16.79	25.72	21.12	25.65	28.1
Merged-chr10-19570966-3	chr10	19570472	19571472	+	923.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-20977.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	106.97	103.68	83.25	83.66	66.71	76.36	107.73	121.15	83.06
Merged-chr9-56924781-3	chr9	56924289	56925289	+	923.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	3582.0	NM_175483	235406.0	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	21.74	19.35	15.72	41.16	27.52	12.06	7.39	3.98	4.37
Merged-chr14-74913784-3	chr14	74913278	74914278	+	923.521423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34099.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	118.99	101.83	92.5	124.82	104.96	74.75	86.61	107.0	65.58
Merged-chr17-44710066-3	chr17	44709565	44710565	+	923.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271627, intron 4 of 7)	intron (NM_001271627, intron 4 of 7)	26111.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	9.15	8.75	4.62	4.05	7.93	12.86	6.34	0.88	2.5
Merged-chr12-91312796-1	chr12	91312296	91313296	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	L2a|LINE|L2	71613.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	7.44	1.84	1.85	6.07	4.2	3.22	1.06	1.33	3.75
Merged-chr19-4262983-3	chr19	4262461	4263461	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105951)	TTS (NR_105951)	917.0	NR_105951	102465595.0		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	52.63	52.07	56.42	66.8	73.71	47.42	57.03	45.99	39.35
Merged-chr9-104234536-2	chr9	104234072	104235072	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28358.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	81.8	82.48	35.15	98.51	82.57	57.07	168.99	131.32	54.33
Merged-chr17-72838341-3	chr17	72837814	72838814	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357370, intron 1 of 2)	intron (NM_001357370, intron 1 of 2)	266.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	96.68	100.91	77.7	96.48	97.97	95.65	108.79	156.09	49.96
Merged-chr7-135581282-1	chr7	135580782	135581782	+	923.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316678, intron 1 of 19)	intron (NM_001316678, intron 1 of 19)	-12199.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	3.43	5.53	5.55	5.4	1.4	8.04	1.06	1.77	1.25
Merged-chr8-3754478-3	chr8	3753999	3754999	+	923.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-5515.0	NM_133238	170786.0	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	3.43	6.91	7.4	1.35	4.2	4.82	0.0	3.1	3.12
Merged-chr1-131937879-3	chr1	131937388	131938388	+	923.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25027.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	16.02	9.22	1.85	12.82	7.0	11.25	8.45	7.96	7.49
Merged-chr3-108148037-3	chr3	108147531	108148531	+	923.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305461)	TTS (NM_001305461)	-1879.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	17.73	12.9	24.05	12.14	6.53	9.65	20.07	11.5	9.99
Merged-chr9-61424456-3	chr9	61423942	61424942	+	923.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	52076.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	8.01	4.61	1.85	8.77	1.87	0.0	0.0	0.0	2.5
Merged-chr10-80159271-3	chr10	80158783	80159783	+	923.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021565)	TTS (NM_021565)	-8556.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	147.02	137.31	150.77	162.61	76.51	155.93	157.37	176.87	116.79
Merged-chr6-13598512-4	chr6	13598065	13599065	+	923.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	9533.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	57.78	76.49	43.47	39.81	36.85	32.15	62.31	41.12	36.22
Merged-chr5-87056039-2	chr5	87055552	87056552	+	923.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	36503.0	NM_001029867	231396.0	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	2.86	6.91	1.85	12.14	18.19	9.65	16.9	7.96	2.5
Merged-chr3-27982725-3	chr3	27982197	27983197	+	923.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164056, intron 2 of 26)	intron (NM_001164056, intron 2 of 26)	-1474.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	17.73	18.89	20.35	22.94	10.73	10.45	21.12	9.29	11.24
Merged-chr9-109118288-3	chr9	109117789	109118789	+	923.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172775, exon 38 of 38)	3' UTR (NM_172775, exon 38 of 38)	22853.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	21.17	15.67	9.25	29.69	15.39	37.78	12.67	14.59	5.62
Merged-chr12-119386455-3	chr12	119385957	119386957	+	923.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56953.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	40.62	41.01	14.8	23.62	29.39	18.49	34.85	32.28	22.48
Merged-chr18-30087458-2	chr18	30086968	30087968	+	923.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185397.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	14.87	16.59	3.7	31.71	22.86	19.29	4.22	3.98	1.25
Merged-chr5-41627702-2	chr5	41627206	41628206	+	923.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310589, intron 6 of 6)	intron (NM_001310589, intron 6 of 6)	79985.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.29	6.91	3.7	4.05	6.53	3.22	4.22	7.07	3.75
Merged-chr7-45897411-2	chr7	45896891	45897891	+	923.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291064)	promoter-TSS (NM_001291064)	322.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	37.18	64.05	69.37	49.25	56.91	94.85	66.54	72.96	68.7
Merged-chr11-70185295-2	chr11	70184793	70185793	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	18670.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	16.02	14.75	8.32	16.19	12.13	8.04	9.51	5.31	6.87
Merged-chr2-75773670-3	chr2	75773178	75774178	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58499.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	53.2	48.84	28.67	57.35	36.85	34.56	48.58	53.5	37.47
Merged-chr13-83067674-3	chr13	83067175	83068175	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-369342.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	24.6	15.21	14.8	20.92	17.73	16.08	33.8	17.69	17.49
Merged-chr12-32245519-3	chr12	32245065	32246065	+	923.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-36916.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	9.72	9.68	1.85	7.42	9.8	4.82	6.34	3.1	5.62
Merged-chr5-72580653-1	chr5	72580153	72581153	+	923.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001024147)	TTS (NM_001024147)	431.0	NM_174877	317755.0	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	1.72	0.92	0.0	0.67	2.33	1.61	2.11	0.44	1.25
Merged-chr1-160251608-1	chr1	160251108	160252108	+	923.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 3 of 8)	intron (NM_001038621, intron 3 of 8)	-38716.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	10.87	5.07	7.4	16.19	11.2	4.82	2.11	5.31	5.0
Merged-chr17-36951097-3	chr17	36950614	36951614	+	923.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029632, intron 1 of 2)	intron (NM_029632, intron 1 of 2)	678.0	NM_029632	76497.0	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	264.29	219.79	160.02	192.97	142.29	143.88	181.66	189.69	102.42
Merged-chr7-67962060-3	chr7	67961575	67962575	+	923.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	9818.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	3.43	3.23	4.62	4.72	2.33	1.61	1.06	0.44	5.62
Merged-chr7-64141014-3	chr7	64140509	64141509	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12826.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	80.66	98.61	72.15	85.01	88.64	95.65	89.78	103.02	64.95
Merged-chrX-9452577-3	chrX	9452083	9453083	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 6 of 12)	intron (NM_007807, intron 6 of 12)	16741.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	5.15	17.51	5.55	6.07	6.53	11.25	14.79	5.31	8.12
Merged-chr19-41333104-3	chr19	41332609	41333609	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	51961.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	168.18	163.12	133.19	175.43	155.81	144.68	258.77	236.12	168.0
Merged-chr14-7958799-3	chr14	7958297	7959297	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35385.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	5.15	7.37	3.7	4.05	5.6	0.8	7.39	3.98	7.49
Merged-chr7-63941703-3	chr7	63941193	63942193	+	923.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2778.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	29.17	45.62	52.72	22.94	20.99	29.74	45.42	55.71	39.97
Merged-chr15-67048864-1	chr15	67048364	67049364	+	923.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79223.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.57	1.38	3.7	2.7	5.13	1.61	3.17	0.44	2.5
Merged-chr1-152573194-3	chr1	152572615	152573615	+	923.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	52102.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	53.2	44.7	37.0	66.8	48.52	33.76	49.64	42.45	22.48
Merged-chr1-34467700-3	chr1	34467176	34468176	+	923.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	C-rich|Low_complexity|Low_complexity	7930.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	62.35	70.5	33.3	58.7	37.32	21.7	51.75	62.79	39.97
Merged-chr15-78931780-3	chr15	78931263	78932263	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3170.0	NM_133800	97961.0	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	9.72	5.07	1.85	6.07	0.47	8.04	3.17	3.54	1.25
Merged-chr1-152606385-3	chr1	152605896	152606896	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	L3|LINE|CR1	18821.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	38.33	46.08	16.65	64.77	37.79	32.15	44.36	41.56	33.1
Merged-chr1-37419609-3	chr1	37419128	37420128	+	923.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198006, exon 3 of 3)	3' UTR (NM_198006, exon 3 of 3)	10475.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	29.17	17.97	14.8	6.07	3.73	15.27	6.34	4.42	6.25
Merged-chr14-51084030-3	chr14	51083542	51084542	+	923.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7035.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	201.93	190.76	144.29	170.7	194.53	103.69	60.2	53.94	20.61
Merged-chr15-8710457-3	chr15	8709929	8710929	+	923.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_148938, exon 1 of 10)	5' UTR (NM_148938, exon 1 of 10)	378.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	70.93	72.34	53.65	51.95	27.99	28.94	83.44	58.37	43.09
Merged-chr7-110002220-3	chr7	110001727	110002727	+	923.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037959, intron 2 of 2)	RLTR49|LTR|ERVK	4419.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	50.34	37.78	54.57	45.88	37.32	49.83	35.91	45.54	48.09
Merged-chr11-74491320-3	chr11	74490823	74491823	+	923.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	MIRb|SINE|MIR	98835.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	56.63	58.06	41.62	31.04	24.26	35.37	62.31	49.08	40.59
Merged-chr11-3131631-2	chr11	3131105	3132105	+	923.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_030207)	TTS (NM_030207)	7584.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	33.18	42.85	65.67	32.39	37.79	65.11	3.17	0.0	63.7
Merged-chr1-177139820-3	chr1	177139314	177140314	+	923.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	RMER19B|LTR|ERVK	108953.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	24.03	23.04	7.4	10.8	16.33	9.65	14.79	12.82	6.87
Merged-chr8-108783376-3	chr8	108782875	108783875	+	923.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	68731.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	34.9	29.49	30.52	34.41	18.19	38.58	21.12	10.17	10.62
Merged-chr3-88649539-3	chr3	88649055	88650055	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3587.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	22.88	12.44	14.8	10.12	8.4	5.63	10.56	6.19	5.62
Merged-chr1-54923553-3	chr1	54923066	54924066	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	2821.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	33.18	45.16	33.3	60.72	56.91	42.6	29.57	34.93	41.84
Merged-chr1-180423410-3	chr1	180422908	180423908	+	923.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081175, exon 8 of 8)	3' UTR (NM_001081175, exon 8 of 8)	60096.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	9.72	6.91	12.95	16.87	6.53	3.22	8.45	5.31	3.12
Merged-chr10-19614534-3	chr10	19614029	19615029	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7499.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	36.04	19.81	22.2	25.64	8.4	21.7	19.01	6.19	18.74
Merged-chr18-9810363-1	chr18	9809863	9810863	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	102715.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	3.43	2.76	3.7	9.45	5.6	3.22	1.06	1.77	3.75
Merged-chr1-157380927-2	chr1	157380430	157381430	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-31422.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	30.89	21.66	12.02	51.95	73.71	34.56	33.8	26.09	6.25
Merged-chr14-114869548-1	chr14	114869048	114870048	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37583.0	NR_045661	75822.0	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	10.87	2.76	3.7	6.07	2.33	1.61	5.28	1.77	1.25
Merged-chrX-166789172-1	chrX	166788672	166789672	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127147.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	16.02	30.87	9.25	12.82	19.13	24.92	30.63	18.57	22.48
Merged-chr2-12745487-1	chr2	12744987	12745987	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178554.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	6.29	5.07	1.85	8.77	7.0	7.23	2.11	4.42	3.12
Merged-chr2-117984782-1	chr2	117984282	117985282	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	126420.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	4.0	5.07	0.0	11.47	7.0	3.22	5.28	0.88	5.62
Merged-chrX-159628901-1	chrX	159628401	159629401	+	923.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	1629.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	32.04	20.74	9.25	22.94	35.45	29.74	45.42	29.18	18.11
Merged-chr12-11178927-2	chr12	11178419	11179419	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25583.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	4.58	1.84	1.85	4.72	0.93	0.0	3.17	2.65	1.87
Merged-chrX-18161919-1	chrX	18161419	18162419	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009483)	promoter-TSS (NM_009483)	-656.0	NM_009483	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	122.42	121.65	92.5	110.65	101.23	78.77	123.57	99.05	56.21
Merged-chr12-79626375-2	chr12	79625862	79626862	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	MamRep137|DNA|TcMar-Tigger	298371.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	119.56	117.96	107.29	120.1	81.64	139.06	102.45	118.5	73.07
Merged-chr12-40200097-1	chr12	40199597	40200597	+	923.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001033437)	promoter-TSS (NM_001033437)	-782.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	2.86	3.69	0.0	5.4	2.33	4.82	3.17	2.21	4.37
Merged-chr12-87262865-3	chr12	87262362	87263362	+	922.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142581, intron 2 of 18)	MTD|LTR|ERVL-MaLR	1382.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	43.48	59.44	42.55	38.46	26.12	35.37	53.87	49.08	34.97
Merged-chr13-30612429-5	chr13	30611941	30612941	+	922.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2602.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	16.59	21.2	21.27	22.94	17.26	26.53	17.96	23.43	14.36
Merged-chr2-130291644-3	chr2	130291127	130292127	+	922.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4312.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	2.86	2.76	0.0	4.72	1.87	4.02	2.11	0.44	3.12
Merged-chr5-4758122-3	chr5	4757628	4758628	+	922.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021457)	promoter-TSS (NM_021457)	88.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	20.02	11.06	1.85	24.29	25.19	10.45	11.62	5.31	11.24
Merged-chrX-48143692-3	chrX	48143259	48144259	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2677.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	40.62	41.47	17.57	41.16	45.25	45.01	42.25	34.93	22.48
Merged-chr17-84028669-3	chr17	84028188	84029188	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30136.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	9.72	4.15	1.85	6.75	4.2	7.23	5.28	3.98	2.5
Merged-chr6-15727778-3	chr6	15727261	15728261	+	922.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7100.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	40.04	48.38	31.45	47.23	38.25	41.8	69.71	42.45	28.1
Merged-chr6-29736181-3	chr6	29735694	29736694	+	922.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176996, exon 1 of 12)	exon (NM_176996, exon 1 of 12)	697.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	28.03	12.44	24.97	39.81	19.59	14.47	28.52	16.8	7.49
Merged-chr19-30031165-3	chr19	30030699	30031699	+	922.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	CpG	686.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	215.66	188.0	202.56	178.13	164.68	170.4	208.07	171.12	174.24
Merged-chr4-53397501-3	chr4	53397013	53398013	+	922.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-42900.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.0	3.23	7.4	12.14	7.0	6.43	4.22	3.54	0.62
Merged-chr15-63545840-2	chr15	63545316	63546316	+	922.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-66208.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	4.0	4.15	9.25	20.92	10.73	12.86	12.67	19.46	7.49
Merged-chr3-100439313-3	chr3	100438817	100439817	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12912.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	13.16	13.82	12.95	17.54	12.6	2.41	23.24	12.38	13.74
Merged-chr14-54376095-3	chr14	54375599	54376599	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 6 of 11)	intron (NM_011405, intron 6 of 11)	15258.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	37.76	37.32	30.52	53.98	38.72	64.3	22.18	19.9	18.11
Merged-chr7-26244041-3	chr7	26243543	26244543	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22788.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	17.16	14.28	18.5	11.47	16.79	24.11	20.07	11.05	28.73
Merged-chr2-181659743-3	chr2	181659233	181660233	+	922.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11907.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	14.3	7.37	9.25	8.77	8.4	12.06	12.67	5.31	1.87
Merged-chr8-3631739-3	chr8	3631222	3632222	+	922.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357168, intron 1 of 18)	intron (NM_001357168, intron 1 of 18)	613.0	NM_011503	20911.0	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	120.13	142.84	102.67	166.66	197.33	128.61	179.55	205.17	89.31
Merged-chr9-25130592-3	chr9	25130079	25131079	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020586, exon 3 of 8)	exon (NM_020586, exon 3 of 8)	21202.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	14.87	16.59	20.35	19.57	14.46	20.9	16.9	18.13	19.98
Merged-chr13-54209618-3	chr13	54209143	54210143	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	17510.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	32.61	28.11	19.42	32.39	19.13	17.68	62.31	45.99	36.22
Merged-chr3-60486154-3	chr3	60485641	60486641	+	922.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	13311.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	31.46	25.8	26.82	29.69	25.66	30.54	65.48	62.79	43.09
Merged-chr7-101936140-3	chr7	101935627	101936627	+	922.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-2270.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	18.88	26.73	14.8	21.59	8.86	21.7	8.45	21.22	15.61
Merged-chr1-182506770-1	chr1	182506270	182507270	+	922.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	10840.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	17.73	4.15	16.65	7.42	8.4	16.08	2.11	3.1	6.25
Merged-chr12-82260335-3	chr12	82259831	82260831	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-51018.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	9.72	12.9	5.55	35.09	43.39	41.8	17.96	36.7	31.85
Merged-chr10-41594621-3	chr10	41594102	41595102	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 30 of 47)	MIRb|SINE|MIR	26586.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	50.91	63.13	62.9	30.36	34.52	47.42	87.66	98.16	43.09
Merged-chr10-14035017-3	chr10	14034465	14035465	+	922.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	MER20|DNA|hAT-Charlie	68586.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	21.74	17.05	10.17	29.01	25.19	27.33	46.47	39.35	27.48
Merged-chr3-129970138-3	chr3	129969603	129970603	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001293644, exon 1 of 7)	5' UTR (NM_001293644, exon 1 of 7)	103.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	8.58	3.69	11.1	16.19	16.33	17.68	7.39	3.1	5.0
Merged-chr2-73529441-3	chr2	73528964	73529964	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153138)	promoter-TSS (NM_153138)	23.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	86.38	79.72	66.6	76.92	96.1	118.16	103.51	73.84	54.33
Merged-chr6-100210884-3	chr6	100210407	100211407	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76451.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	46.34	31.79	24.97	38.46	42.92	28.13	53.87	29.63	16.24
Merged-chrX-142683137-3	chrX	142682620	142683620	+	922.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	1394.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	121.28	130.86	72.15	132.92	124.09	93.24	128.85	119.83	66.2
Merged-chr2-129595017-4	chr2	129594538	129595538	+	922.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355160)	promoter-TSS (NM_001355160)	-424.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	457.64	468.16	326.51	356.25	314.43	309.46	389.73	491.25	273.54
Merged-chr17-27954756-2	chr17	27954255	27955255	+	922.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45449.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	33.75	27.19	24.97	38.46	30.79	32.96	7.39	10.17	13.12
Merged-chr11-120903433-3	chr11	120902936	120903936	+	922.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 5 of 18)	intron (NM_027745, intron 5 of 18)	29436.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	38.33	47.0	69.37	49.93	39.19	57.87	27.46	35.37	29.35
Merged-chr4-102753551-3	chr4	102753041	102754041	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6594.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	25.17	28.57	20.35	32.39	22.39	30.54	12.67	11.05	9.99
Merged-chr2-140395925-1	chr2	140395425	140396425	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028387, intron 1 of 3)	CpG	490.0	NM_028387	72899.0	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	2.29	2.3	4.62	8.1	3.73	2.41	2.11	2.21	2.5
Merged-chr1-24586915-1	chr1	24586415	24587415	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 1 of 50)	CpG	522.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.86	1.38	1.85	0.0	0.93	1.61	2.11	0.0	2.5
Merged-chr8-111546466-1	chr8	111545966	111546966	+	922.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	8123.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	5.72	4.61	1.85	29.69	9.33	17.68	3.17	0.88	3.75
Merged-chr14-34343227-3	chr14	34342734	34343734	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008133, intron 12 of 12)	intron (NM_008133, intron 12 of 12)	-1821.0	NR_027380	100041231.0	Mm.425871	NR_027380		Gm3219	-	B-cell CLL/lymphoma 7C pseudogene	pseudo	7.44	15.67	9.25	15.52	13.53	4.82	12.67	13.27	14.99
Merged-chr5-125137242-3	chr5	125136764	125137764	+	922.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	41950.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	33.18	28.11	52.72	46.56	27.06	34.56	12.67	12.38	4.37
Merged-chr14-19976726-2	chr14	19976204	19977204	+	922.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285911)	promoter-TSS (NM_001285911)	-11.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	126.42	154.36	86.02	134.27	103.56	92.44	91.89	91.97	42.47
Merged-chr1-94721223-3	chr1	94720731	94721731	+	922.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76211.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	17.73	24.42	12.95	15.52	25.66	14.47	9.51	16.36	8.12
Merged-chr18-34372945-3	chr18	34372448	34373448	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007874, intron 1 of 4)	CpG	467.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	62.93	56.22	69.37	84.34	69.51	109.32	66.54	49.08	43.72
Merged-chr15-64186040-3	chr15	64185563	64186563	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-125615.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	44.05	59.9	42.55	70.17	62.98	48.23	99.28	109.66	57.46
Merged-chr9-40325158-3	chr9	40324664	40325664	+	922.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	-3841.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	268.87	199.52	215.51	228.73	155.81	164.78	143.64	145.47	48.09
Merged-chr13-93773922-1	chr13	93773422	93774422	+	922.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	intron (NM_009712, intron 1 of 7)	2243.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	12.59	14.28	3.7	31.04	30.79	18.49	3.17	1.77	4.37
Merged-chr10-7207553-2	chr10	7207057	7208057	+	922.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	4680.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	7.44	6.45	3.7	10.12	11.66	8.84	47.53	35.37	32.48
Merged-chr5-147564361-3	chr5	147563864	147564864	+	922.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010228, exon 30 of 30)	exon (NM_010228, exon 30 of 30)	134208.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	6.29	9.22	7.4	12.82	7.0	1.61	11.62	15.92	14.99
Merged-chr8-114133583-2	chr8	114133087	114134087	+	922.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290182)	promoter-TSS (NM_001290182)	13.0	NM_024437	67528.0	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	11.44	3.23	0.0	11.47	1.87	14.47	4.22	2.65	5.0
Merged-chr4-142098507-3	chr4	142098010	142099010	+	922.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14206.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	159.6	93.54	100.82	136.97	65.78	81.18	143.64	144.59	71.82
Merged-chr11-69395584-5	chr11	69395116	69396116	+	922.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030083)	promoter-TSS (NM_030083)	-175.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	430.76	342.36	178.52	356.25	262.18	218.63	328.47	328.09	171.75
Merged-chr7-5125400-4	chr7	5124899	5125899	+	922.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009028, exon 1 of 1)	exon (NM_009028, exon 1 of 1)	551.0	NM_009028	19428.0	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	154.45	164.96	158.17	188.25	215.53	100.47	234.47	190.13	83.69
Merged-chr14-58284648-2	chr14	58284142	58285142	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211956.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.0	6.45	5.55	4.05	4.67	19.29	9.51	8.4	13.12
Merged-chr12-105795122-1	chr12	105794622	105795622	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	10425.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	24.03	22.58	29.6	14.84	22.39	26.53	21.12	14.15	9.99
Merged-chr7-45741481-2	chr7	45740999	45741999	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	979.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	1.72	3.69	5.55	4.72	3.27	6.43	79.21	101.7	54.96
Merged-chr4-99152356-3	chr4	99151864	99152864	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31449.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	86.95	82.94	54.57	57.35	41.05	76.36	108.79	100.37	69.32
Merged-chr1-149827193-2	chr1	149826697	149827697	+	922.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95242.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.44	5.53	20.35	11.47	4.67	11.25	42.25	25.65	15.61
Merged-chr18-80555975-3	chr18	80555470	80556470	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11424.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	12.59	9.22	1.85	17.54	6.53	4.82	12.67	7.07	5.0
Merged-chr4-124657509-3	chr4	124656989	124657989	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-157.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	1.14	2.3	1.85	6.07	1.4	4.82	8.45	0.44	0.0
Merged-chr11-3175993-2	chr11	3175510	3176510	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 6 of 32)	RLTR16B_MM|LTR|ERVK	17453.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	69.79	121.65	125.79	109.3	150.22	219.43	2.11	1.77	148.01
Merged-chr4-135272066-4	chr4	135271572	135272572	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	ID_B1|SINE|B4	688.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	282.59	254.35	266.39	226.71	194.07	180.05	172.16	168.47	133.02
Merged-chr6-128992947-2	chr6	128992445	128993445	+	922.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015455)	promoter-TSS (NR_015455)	-16.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	67.5	115.66	55.5	65.45	75.11	66.71	23.24	15.03	21.86
Merged-chr2-84617969-3	chr2	84617484	84618484	+	922.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 5 of 18)	intron (NM_001355064, intron 5 of 18)	31496.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	40.62	46.54	35.15	46.56	33.12	32.15	50.7	70.3	23.73
Merged-chr7-25298197-3	chr7	25297656	25298656	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008776)	promoter-TSS (NM_008776)	-170.0	NM_001357350	18476.0	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	73.79	79.25	78.62	48.58	39.65	64.3	76.05	89.76	61.83
Merged-chr19-6418290-3	chr19	6417803	6418803	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205235)	promoter-TSS (NM_001205235)	-435.0	NM_001205235	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	21.17	18.89	18.5	33.06	16.33	28.94	25.35	24.32	16.24
Merged-chr8-34155088-3	chr8	34154572	34155572	+	922.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	509.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	378.7	528.98	314.48	363.0	477.24	217.83	332.7	485.06	239.82
Merged-chr13-101742855-3	chr13	101742369	101743369	+	922.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	25348.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	70.93	86.63	69.37	45.88	51.78	50.64	70.76	61.46	48.09
Merged-chr14-103898794-3	chr14	103898277	103899277	+	922.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54301.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.58	2.76	1.85	10.12	6.06	6.43	4.22	4.86	0.0
Merged-chr6-128107966-3	chr6	128107481	128108481	+	922.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	35597.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	8.58	8.29	12.95	4.72	4.2	8.04	8.45	6.19	10.62
Merged-chr18-39140742-3	chr18	39140242	39141242	+	922.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	147597.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	74.94	81.1	62.9	74.89	79.31	94.04	70.76	78.26	74.32
Merged-chr12-73693575-3	chr12	73693072	73694072	+	922.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 4 of 13)	B3|SINE|B2	108776.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	12.59	7.37	6.47	12.82	2.8	4.82	2.11	3.1	2.5
Merged-chr5-72723605-3	chr5	72723078	72724078	+	922.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289494, intron 5 of 13)	intron (NM_001289494, intron 5 of 13)	13024.0	NM_013698	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	2.86	3.69	0.0	8.1	2.8	1.61	7.39	4.42	7.49
Merged-chr13-17028789-2	chr13	17028296	17029296	+	922.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138654, intron 12 of 13)	ORR1F|LTR|ERVL-MaLR	665969.0	NM_138654	192136.0	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	3.43	3.69	5.55	5.4	1.87	1.61	3.17	1.33	1.25
Merged-chr16-50431701-4	chr16	50431176	50432176	+	922.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	CpG	713.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	152.17	152.06	162.79	186.22	121.29	131.82	170.05	110.54	94.3
Merged-chr19-10266640-2	chr19	10266128	10267128	+	922.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 5 of 19)	intron (NM_198114, intron 5 of 19)	-25880.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	8.01	6.45	0.0	11.47	2.8	6.43	5.28	4.86	8.74
Merged-chr13-23573562-2	chr13	23573093	23574093	+	922.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178188)	promoter-TSS (NM_178188)	597.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	152.17	130.86	86.02	112.68	90.97	63.5	88.72	132.65	68.7
Merged-chr13-24519172-2	chr13	24518663	24519663	+	922.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63026.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	3.43	2.76	7.4	6.07	3.27	0.0	5.28	2.65	1.25
Merged-chr10-60245218-3	chr10	60244728	60245728	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25968.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	13.16	5.53	7.4	7.42	2.33	5.63	4.22	4.86	3.12
Merged-chr12-102387432-3	chr12	102386934	102387934	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	52379.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	9.15	9.68	15.72	11.47	5.13	10.45	8.45	1.33	8.12
Merged-chr17-10344771-3	chr17	10344255	10345255	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	20153.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	65.21	34.56	24.05	75.57	57.85	69.93	61.26	40.24	47.46
Merged-chr12-71006285-3	chr12	71005758	71006758	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	9565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	47.48	58.98	37.92	37.78	39.19	49.83	45.42	26.09	34.97
Merged-chr13-49178072-3	chr13	49177580	49178580	+	922.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9467.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	17.73	6.45	12.95	10.8	3.27	9.65	15.84	9.29	6.25
Merged-chr15-59530837-3	chr15	59530341	59531341	+	922.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-117813.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	23.45	19.81	4.62	31.71	17.26	10.45	13.73	13.27	5.0
Merged-chr19-6399716-3	chr19	6399258	6400258	+	922.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-825.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	30.89	23.96	57.35	28.34	21.93	50.64	48.58	36.26	38.1
Merged-chr6-116676670-3	chr6	116676201	116677201	+	922.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2865.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	42.9	30.87	32.37	32.39	22.86	58.68	59.15	49.08	44.97
Merged-chr11-86585751-3	chr11	86585253	86586253	+	922.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 11 of 11)	intron (NM_001356531, intron 11 of 11)	-1595.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	327.79	393.05	227.54	346.8	410.06	270.88	404.52	484.62	227.33
Merged-chr15-59457369-3	chr15	59456865	59457865	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	83167.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	58.92	113.81	62.9	89.74	78.37	97.26	71.82	91.53	66.2
Merged-chr2-83728564-3	chr2	83728077	83729077	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	4180.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	37.76	46.08	22.2	26.31	38.25	41.8	43.3	41.56	42.47
Merged-chr10-21961126-3	chr10	21960619	21961619	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-17553.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	21.74	13.36	13.87	29.01	13.53	34.56	12.67	7.07	11.24
Merged-chr9-123953781-3	chr9	123953299	123954299	+	922.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	14893.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	44.05	50.69	21.27	52.63	29.86	28.94	34.85	29.18	21.23
Merged-chr1-184622699-3	chr1	184622177	184623177	+	922.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64986.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	58.92	47.0	20.35	93.11	54.58	83.59	67.6	45.54	29.35
Merged-chr19-38010591-2	chr19	38010075	38011075	+	922.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	33002.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	59.49	50.23	38.85	57.35	54.58	48.23	29.57	40.24	24.98
Merged-chr5-120528474-3	chr5	120527960	120528960	+	922.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 12 of 13)	B3|SINE|B2	17268.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	26.31	16.59	22.2	30.36	22.86	35.37	35.91	33.6	13.74
Merged-chr2-153784199-3	chr2	153783699	153784699	+	922.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 3 of 7)	MLT1E1A|LTR|ERVL-MaLR	3320.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	57.78	78.79	81.4	69.5	94.23	53.85	84.49	83.57	49.34
Merged-chr2-128704462-6	chr2	128703936	128704936	+	922.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	B2_Mm2|SINE|B2	5521.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	72.65	51.61	28.67	72.19	62.05	59.48	69.71	74.28	69.32
Merged-chr5-125384656-3	chr5	125384142	125385142	+	922.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5375.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	24.03	13.82	18.5	14.84	6.53	20.09	26.4	30.51	12.49
Merged-chr13-111488857-3	chr13	111488381	111489381	+	922.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028487, intron 1 of 12)	CpG	1246.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	261.43	205.51	184.99	195.67	160.95	147.9	238.7	155.2	139.27
Merged-chr12-35573992-3	chr12	35573515	35574515	+	922.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39026.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	16.59	19.35	12.95	39.81	27.06	20.09	13.73	8.84	5.62
Merged-chr10-82901600-2	chr10	82901082	82902082	+	922.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34956.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	12.01	4.15	2.77	8.77	1.4	8.84	14.79	7.52	4.37
Merged-chr10-91139685-3	chr10	91139183	91140183	+	922.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15720.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	64.64	79.72	37.92	74.22	78.37	70.73	86.61	70.3	39.97
Merged-chr17-47505038-3	chr17	47504484	47505484	+	922.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081636)	promoter-TSS (NM_001081636)	-67.0	NM_001081636	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	29.75	24.88	44.4	37.78	34.06	35.37	32.74	38.91	31.85
Merged-chr7-145308425-3	chr7	145307914	145308914	+	922.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145379, exon 3 of 3)	exon (NM_145379, exon 3 of 3)	-6421.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.86	5.99	7.4	12.82	24.26	14.47	14.79	11.94	7.49
Merged-chr9-22164968-3	chr9	22164478	22165478	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	8132.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	25.74	27.65	20.35	48.58	52.25	48.23	25.35	21.22	17.49
Merged-chr11-43715505-3	chr11	43715019	43716019	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164231, intron 2 of 3)	intron (NM_001164231, intron 2 of 3)	32454.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	12.59	19.81	29.6	17.54	11.2	23.31	21.12	18.13	10.62
Merged-chr7-141456937-3	chr7	141456445	141457445	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028142, intron 2 of 9)	intron (NR_028142, intron 2 of 9)	1757.0	NM_001163689	66853.0	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	52.63	36.86	28.67	71.52	48.52	48.23	40.14	45.1	25.61
Merged-chr13-56631535-3	chr13	56631041	56632041	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 10 of 16)	intron (NR_155548, intron 10 of 16)	21955.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	16.59	19.35	15.72	13.49	11.2	15.27	26.4	12.38	15.61
Merged-chr2-4460314-3	chr2	4459828	4460828	+	922.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	59352.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	38.33	28.11	20.35	18.22	10.73	4.82	70.76	111.43	29.35
Merged-chr9-55272190-2	chr9	55271693	55272693	+	922.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	MTD|LTR|ERVL-MaLR	11432.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.0	6.45	0.0	8.77	4.67	8.04	9.51	8.4	1.25
Merged-chr10-57712868-2	chr10	57712367	57713367	+	922.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	61886.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	7.44	7.37	13.87	29.69	15.86	14.47	16.9	10.61	11.87
Merged-chr1-30948568-3	chr1	30948084	30949084	+	922.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1126.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	132.72	208.74	119.32	126.85	217.39	110.92	141.53	197.65	107.42
Merged-chr11-106564441-3	chr11	106563936	106564936	+	922.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	48494.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	41.19	23.5	16.65	58.7	50.85	49.83	51.75	30.51	25.61
Merged-chrX-155338471-3	chrX	155337977	155338977	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313711)	promoter-TSS (NM_001313711)	-17.0	NM_001313711	53381.0	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	10.87	8.29	16.65	13.49	18.19	15.27	17.96	12.38	13.74
Merged-chr18-31761013-3	chr18	31760512	31761512	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001242430, exon 1 of 8)	5' UTR (NM_001242430, exon 1 of 8)	396.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	52.63	42.85	36.07	47.9	27.99	37.78	69.71	42.89	47.46
Merged-chr4-83526375-3	chr4	83525870	83526870	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355549, intron 1 of 24)	intron (NM_001355549, intron 1 of 24)	825.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	33.75	39.17	16.65	31.04	31.72	28.13	43.3	44.66	16.24
Merged-chr16-21286320-3	chr16	21285855	21286855	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	10517.0	NR_046162	328646.0	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	9.15	7.83	9.25	15.52	5.13	11.25	10.56	11.94	13.74
Merged-chr17-26957184-3	chr17	26956652	26957652	+	922.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001281491, exon 8 of 19)	exon (NM_001281491, exon 8 of 19)	-9033.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	28.03	7.37	9.25	32.39	19.13	23.31	11.62	9.29	12.49
Merged-chr9-118506226-3	chr9	118505712	118506712	+	922.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018748)	promoter-TSS (NM_018748)	-106.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	73.79	52.53	51.8	78.27	60.18	49.83	86.61	46.87	33.72
Merged-chr11-78080343-3	chr11	78079841	78080841	+	922.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	42.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	40.62	37.78	33.3	32.39	38.25	55.46	48.58	53.06	26.23
Merged-chr11-5792662-3	chr11	5792146	5793146	+	922.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146309, intron 2 of 12)	intron (NM_001146309, intron 2 of 12)	4163.0	NM_013810	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	26.89	17.51	18.5	22.27	18.66	24.11	22.18	22.11	18.11
Merged-chr14-118854555-3	chr14	118854056	118855056	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021386)	promoter-TSS (NM_021386)	-394.0	NM_021386	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	2.29	0.92	3.7	2.02	3.27	1.61	0.0	2.65	5.0
Merged-chrX-49280116-3	chrX	49279627	49280627	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	intron (NM_001271449, intron 2 of 15)	8115.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	30.32	40.55	44.4	38.46	35.45	24.11	41.19	35.82	39.97
Merged-chr2-164078193-1	chr2	164077693	164078693	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	4015.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	21.17	16.59	22.2	22.94	15.86	16.08	25.35	22.11	12.49
Merged-chr12-11337011-1	chr12	11336511	11337511	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	37124.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	2.29	5.53	5.55	5.4	5.13	4.82	9.51	1.77	4.37
Merged-chr10-78464442-1	chr10	78463942	78464942	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	506.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	187.06	203.67	135.04	219.96	273.84	164.78	211.24	214.89	68.7
Merged-chr13-111941378-1	chr13	111940878	111941878	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	73442.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	27.46	25.8	18.5	28.34	15.86	8.04	16.9	11.5	5.62
Merged-chr5-90892107-1	chr5	90891607	90892607	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008176, intron 3 of 3)	intron (NM_008176, intron 3 of 3)	862.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	9.72	11.06	9.25	18.22	9.33	14.47	4.22	4.86	1.25
Merged-chr18-60624482-1	chr18	60623982	60624982	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177340)	promoter-TSS (NM_177340)	-177.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	10.87	5.99	5.55	16.19	4.2	2.41	6.34	2.21	1.87
Merged-chr9-118747972-2	chr9	118747477	118748477	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36285.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	38.9	22.12	17.57	50.6	39.65	37.78	17.96	9.73	7.49
Merged-chr12-84408241-3	chr12	84407764	84408764	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028377)	promoter-TSS (NM_028377)	765.0	NM_007647	12499.0	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	40.04	38.71	8.32	54.65	57.85	42.6	50.7	41.56	25.61
Merged-chr9-99171371-2	chr9	99170872	99171872	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31161.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	4.58	3.69	0.0	8.1	2.8	3.22	7.39	0.88	8.74
Merged-chr1-149826352-2	chr1	149825862	149826862	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C1|LTR|ERVK	96077.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.0	2.3	9.25	7.42	5.13	9.65	53.87	42.45	24.36
Merged-chr4-135352714-3	chr4	135352178	135353178	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016799, intron 1 of 17)	CpG	536.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	263.14	275.55	246.96	256.39	236.05	199.34	252.43	203.84	136.77
Merged-chr19-33158423-1	chr19	33157923	33158923	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 4 of 4)	MIRb|SINE|MIR	1311.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	5.72	7.83	7.4	10.12	6.53	15.27	3.17	5.31	3.12
Merged-chr4-9621363-1	chr4	9620863	9621863	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133723, exon 5 of 5)	3' UTR (NM_133723, exon 5 of 5)	22354.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.29	4.61	3.7	5.4	5.13	5.63	6.34	1.77	3.12
Merged-chr19-11376630-1	chr19	11376130	11377130	+	922.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310331, intron 1 of 6)	intron (NM_001310331, intron 1 of 6)	1142.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	9.72	17.05	13.87	35.09	34.99	52.25	11.62	7.52	9.37
Merged-chr10-87857403-3	chr10	87856898	87857898	+	922.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001314010)	promoter-TSS (NM_001314010)	-867.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	24.6	27.65	21.27	29.01	31.72	32.15	41.19	28.3	20.61
Merged-chr7-19302197-8	chr7	19301673	19302673	+	921.9910890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008036)	TTS (NM_008036)	7872.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	10.3	4.61	7.4	9.45	6.53	3.22	8.45	3.54	5.0
Merged-chr18-37877861-3	chr18	37877351	37878351	+	921.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007858, intron 16 of 26)	intron (NM_007858, intron 16 of 26)	-23191.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	10.3	12.9	7.4	8.77	8.86	6.43	10.56	4.42	14.99
Merged-chr19-29816339-3	chr19	29815821	29816821	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3347.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	30.89	13.82	18.5	29.69	23.79	32.15	12.67	13.71	7.49
Merged-chr15-51083824-3	chr15	51083331	51084331	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-193790.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	20.59	7.83	8.32	12.14	7.93	8.84	8.45	6.19	8.74
Merged-chr15-58758427-3	chr15	58757937	58758937	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64990.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	31.46	17.05	22.2	30.36	19.59	4.82	24.29	17.69	17.49
Merged-chr7-28675266-3	chr7	28674756	28675756	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17593.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	34.9	57.14	52.72	31.04	42.92	62.7	82.38	80.03	58.08
Merged-chr5-99237324-3	chr5	99236805	99237805	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	15622.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	42.33	43.77	33.3	33.74	44.32	63.5	50.7	52.18	42.47
Merged-chr17-17895595-3	chr17	17895103	17896103	+	921.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7779.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	31.46	47.46	49.95	38.46	20.06	46.62	36.97	38.91	42.47
Merged-chr10-96623578-5	chr10	96623189	96624189	+	921.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007569)	TTS (NM_007569)	6688.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	18.31	8.75	12.02	16.19	7.0	11.25	11.62	11.94	5.0
Merged-chr9-85325675-3	chr9	85325192	85326192	+	921.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160379, intron 2 of 2)	intron (NM_001160379, intron 2 of 2)	1432.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	77.23	129.94	56.42	90.41	87.7	48.23	123.57	146.36	70.57
Merged-chr1-58897730-2	chr1	58897232	58898232	+	921.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75750.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	1.72	4.15	5.55	0.67	0.47	2.41	2.11	6.19	8.74
Merged-chr5-138731063-3	chr5	138730524	138731524	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-24057.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	4.0	9.68	5.55	12.14	10.26	27.33	14.79	10.61	5.62
Merged-chr6-54780746-3	chr6	54780239	54781239	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36177.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	22.31	32.25	23.12	20.92	18.19	22.51	23.24	42.01	27.48
Merged-chr9-42897565-3	chr9	42897091	42898091	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	CpG	46780.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	10.87	14.75	1.85	31.71	7.0	4.82	13.73	5.75	0.62
Merged-chr3-148805911-3	chr3	148805404	148806404	+	921.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148731.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	13.73	7.83	12.02	24.29	8.4	3.22	9.51	14.59	19.36
Merged-chr18-74780114-3	chr18	74779616	74780616	+	921.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177470, intron 1 of 9)	intron (NM_177470, intron 1 of 9)	904.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	36.04	59.44	39.77	41.83	67.64	74.75	51.75	26.53	30.6
Merged-chr10-61267574-3	chr10	61267071	61268071	+	921.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 2 of 21)	intron (NM_001081127, intron 2 of 21)	5867.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	4.58	5.53	5.55	6.07	5.6	4.82	10.56	3.54	5.0
Merged-chr5-38082717-3	chr5	38082219	38083219	+	921.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	43489.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	48.62	54.83	44.4	33.74	42.45	37.78	68.65	79.15	59.33
Merged-chr18-38404456-3	chr18	38403959	38404959	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR48|LTR|ERV1	-14448.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	29.17	13.36	5.55	64.1	34.52	17.68	20.07	9.73	8.74
Merged-chr3-51719198-3	chr3	51718700	51719700	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58021.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	40.04	41.47	32.37	29.01	16.33	26.53	39.08	14.59	17.49
Merged-chr12-112560305-1	chr12	112559805	112560805	+	921.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28479.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	13.73	7.83	26.82	4.72	7.0	0.0	1.06	3.54	1.25
Merged-chr1-192745649-3	chr1	192745153	192746153	+	921.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	U5|snRNA|snRNA	25566.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	62.93	60.82	33.3	20.24	16.79	7.23	40.14	37.14	15.61
Merged-chr9-60794406-1	chr9	60793906	60794906	+	921.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028283)	promoter-TSS (NM_028283)	-36.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	12.59	5.99	1.85	13.49	13.53	8.04	3.17	3.1	5.0
Merged-chrX-19172024-3	chrX	19171524	19172524	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25053.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	18.31	12.44	12.95	9.45	13.53	15.27	6.34	10.61	8.74
Merged-chr10-8834050-3	chr10	8833572	8834572	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	51998.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	25.74	17.05	20.35	24.29	9.8	12.86	23.24	24.32	12.49
Merged-chr1-91252213-3	chr1	91251698	91252698	+	921.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	1632.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	173.9	208.27	135.04	149.11	120.83	130.21	164.76	156.97	98.68
Merged-chr14-13961739-4	chr14	13961246	13962246	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025435)	promoter-TSS (NM_025435)	106.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	63.5	46.08	42.55	37.78	31.72	37.78	61.26	36.7	14.36
Merged-chr14-65890854-2	chr14	65890353	65891353	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53551.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	15.45	4.15	3.7	4.05	3.73	2.41	17.96	18.57	6.87
Merged-chr11-4333222-2	chr11	4332720	4333720	+	921.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66424.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	9.15	4.15	11.1	6.07	3.27	6.43	3.17	0.88	5.0
Merged-chr6-34868498-3	chr6	34868000	34869000	+	921.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	5354.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	175.62	194.45	197.94	166.66	178.21	184.87	195.39	184.83	103.05
Merged-chr1-135734340-3	chr1	135733829	135734829	+	921.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	5162.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	40.62	35.48	37.0	22.94	13.06	14.47	39.08	27.86	26.23
Merged-chr2-31152323-3	chr2	31151828	31152828	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040334)	promoter-TSS (NR_040334)	12.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	37.76	33.64	36.07	49.93	29.86	51.44	76.05	54.39	29.98
Merged-chr18-21701985-1	chr18	21701485	21702485	+	921.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49617.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	9.15	12.9	11.1	8.1	10.26	11.25	5.28	4.42	4.37
Merged-chr4-59806308-1	chr4	59805808	59806808	+	921.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	CpG	658.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	132.14	102.75	122.09	151.14	155.81	155.93	154.2	145.47	72.45
Merged-chr11-118446046-3	chr11	118445514	118446514	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045902, intron 2 of 2)	intron (NR_045902, intron 2 of 2)	2480.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	11.44	3.23	4.62	11.47	3.73	8.04	10.56	5.31	7.49
Merged-chr6-34293055-3	chr6	34292570	34293570	+	921.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24373.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	4.58	8.29	0.0	6.75	7.46	4.82	2.11	4.42	12.49
Merged-chr12-85444866-3	chr12	85444350	85445350	+	921.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29040.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	92.67	70.96	40.7	91.76	44.78	44.21	81.33	66.77	44.97
Merged-chr2-165948250-3	chr2	165947767	165948767	+	921.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44370.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	129.86	120.73	61.97	204.44	146.48	149.5	180.61	215.34	98.68
Merged-chr14-71011154-2	chr14	71010657	71011657	+	921.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121050.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.0	3.69	12.95	7.42	7.0	3.22	3.17	3.98	3.75
Merged-chr10-82666644-3	chr10	82666149	82667149	+	921.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029102, intron 3 of 9)	L2c|LINE|L2	24001.0	NM_029102	74782.0	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	3.43	3.23	3.7	3.37	3.27	1.61	10.56	2.65	4.37
Merged-chr14-7991596-4	chr14	7991088	7992088	+	921.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 1 of 7)	ID_B1|SINE|B4	2594.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	82.38	135.93	135.97	89.06	92.37	96.45	111.96	153.87	86.18
Merged-chr18-80322721-5	chr18	80322269	80323269	+	921.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001190373, exon 3 of 4)	exon (NM_001190373, exon 3 of 4)	41485.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	33.75	11.06	0.0	15.52	9.33	16.88	20.07	10.61	8.74
Merged-chr1-13978843-3	chr1	13978330	13979330	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-191901.0	NR_004447	433273.0	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	7.44	9.68	5.55	4.72	6.53	10.45	4.22	7.96	6.25
Merged-chr10-34195038-3	chr10	34194547	34195547	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	12504.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	87.52	98.61	63.82	81.64	76.04	56.27	78.16	88.43	66.2
Merged-chr15-55318905-3	chr15	55318410	55319410	+	921.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	11160.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	8.58	7.83	3.7	3.37	4.2	3.22	2.11	1.33	12.49
Merged-chr3-79172572-2	chr3	79172079	79173079	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26704.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	204.8	214.73	128.57	210.51	192.67	206.57	231.3	330.3	110.54
Merged-chr13-15848210-3	chr13	15847698	15848698	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	40955.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	5.72	8.29	3.7	2.7	5.13	8.84	6.34	5.31	3.75
Merged-chr8-83698438-3	chr8	83697899	83698899	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177262, intron 1 of 21)	intron (NM_177262, intron 1 of 21)	780.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	90.96	83.86	98.97	102.56	94.23	102.08	124.63	139.28	78.07
Merged-chr17-74447478-1	chr17	74446978	74447978	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033367, intron 3 of 8)	intron (NM_001033367, intron 3 of 8)	11630.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	24.6	30.41	44.4	2.02	3.73	4.02	10.56	3.98	0.0
Merged-chr11-79878860-2	chr11	79878358	79879358	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	83529.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	34.9	41.47	41.62	85.69	97.97	94.85	63.37	69.86	41.22
Merged-chr14-103815759-1	chr14	103815259	103816259	+	921.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007904, exon 7 of 7)	3' UTR (NM_007904, exon 7 of 7)	27942.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	10.3	4.61	0.92	14.84	14.0	20.9	6.34	5.31	3.75
Merged-chr15-59390399-3	chr15	59389911	59390911	+	921.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	16213.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	25.17	28.11	32.37	33.06	26.12	30.54	36.97	27.41	18.74
Merged-chr6-127147881-3	chr6	127147388	127148388	+	921.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 2 of 4)	intron (NM_009829, intron 2 of 4)	-1501.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	11.44	6.91	5.55	5.4	3.27	6.43	6.34	0.88	2.5
Merged-chr3-133525612-5	chr3	133525111	133526111	+	921.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	B1_Mus1|SINE|Alu	18779.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	36.61	19.81	27.75	26.99	14.0	21.7	14.79	24.32	10.62
Merged-chr10-60369602-3	chr10	60369103	60370103	+	921.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	22752.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	13.73	9.22	12.95	15.52	8.4	18.49	9.51	7.96	3.12
Merged-chr3-152397097-3	chr3	152396596	152397596	+	921.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	412.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	109.83	121.19	100.82	151.14	102.17	91.63	174.27	96.83	83.69
Merged-chr2-163760746-2	chr2	163760248	163761248	+	921.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10509.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	81.23	81.56	38.85	78.27	83.04	85.2	40.14	42.45	31.23
Merged-chr12-72490219-2	chr12	72489715	72490715	+	921.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030070, intron 23 of 24)	RLTR19|LTR|ERVK	-46142.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	2.29	4.61	0.0	16.19	9.8	16.88	17.96	9.73	1.25
Merged-chr2-120099118-3	chr2	120098613	120099613	+	921.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	55462.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	92.1	70.5	60.12	132.24	76.51	94.04	134.14	151.66	59.33
Merged-chr4-15269006-3	chr4	15268424	15269424	+	921.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3104.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	44.05	68.2	40.7	62.75	59.71	45.01	32.74	37.58	23.11
Merged-chr14-74947862-3	chr14	74947344	74948344	+	921.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252132)	promoter-TSS (NM_001252132)	33.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	116.13	107.36	105.44	104.58	86.3	125.39	101.39	109.66	68.07
Merged-chr6-124279653-2	chr6	124279182	124280182	+	921.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24969.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	60.07	90.77	56.42	100.53	76.04	92.44	68.65	106.12	79.94
Merged-chr2-157094166-2	chr2	157093667	157094667	+	921.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177439, intron 4 of 5)	L3|LINE|CR1	7112.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	19.45	13.82	19.42	16.19	7.93	10.45	12.67	11.05	9.99
Merged-chr19-17163675-3	chr19	17163198	17164198	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175807.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	16.02	15.21	9.25	16.19	11.2	16.08	9.51	11.05	11.87
Merged-chr10-122570828-3	chr10	122570328	122571328	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040616)	promoter-TSS (NR_040616)	-937.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	82.95	84.78	67.52	91.76	88.64	69.93	130.97	140.17	49.96
Merged-chr17-73971528-3	chr17	73971045	73972045	+	921.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21349.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	35.47	49.76	16.65	64.77	79.31	76.36	86.61	91.97	75.57
Merged-chr18-15140494-2	chr18	15140005	15141005	+	921.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	10941.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	4.0	4.61	2.77	5.4	0.0	3.22	2.11	0.88	1.25
Merged-chrX-48341328-3	chrX	48340825	48341825	+	921.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178782)	promoter-TSS (NM_178782)	-33.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	8.58	8.29	13.87	8.77	7.0	11.25	11.62	11.05	6.25
Merged-chr7-19747494-3	chr7	19746981	19747981	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	2092.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	23.45	11.98	27.75	15.52	4.67	8.84	20.07	11.05	16.24
Merged-chr5-99266505-3	chr5	99265999	99266999	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13572.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	60.64	38.25	32.37	24.29	15.39	17.68	42.25	46.43	29.35
Merged-chr10-24651311-3	chr10	24650778	24651778	+	921.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 20 of 25)	exon (NM_008813, exon 20 of 25)	55836.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	115.55	87.09	69.37	73.54	81.17	72.34	100.34	109.66	38.1
Merged-chr3-88023015-3	chr3	88022542	88023542	+	921.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022031, intron 6 of 6)	CpG	4469.0	NM_022031	73940.0	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	4.58	0.92	5.55	0.67	0.47	1.61	10.56	1.77	3.75
Merged-chr7-141219429-3	chr7	141218920	141219920	+	921.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025886)	TTS (NM_025886)	2073.0	NR_029793	387206.0		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	10.87	8.75	7.4	17.54	5.6	2.41	5.28	7.52	8.74
Merged-chr2-168956048-1	chr2	168955548	168956548	+	921.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009564)	promoter-TSS (NM_009564)	-461.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	53.77	52.99	28.67	101.88	83.97	57.87	68.65	49.08	21.23
Merged-chr3-41375402-1	chr3	41374902	41375902	+	921.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	117797.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	9.15	6.45	3.7	10.12	6.53	6.43	6.34	2.65	5.62
Merged-chr4-151842271-3	chr4	151841765	151842765	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	MLT1E2|LTR|ERVL-MaLR	19503.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	114.41	143.3	86.02	87.71	100.3	81.99	100.34	94.18	64.95
Merged-chr1-131979845-3	chr1	131979353	131980353	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9244.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	28.6	33.18	33.3	28.34	28.92	62.7	29.57	24.32	28.73
Merged-chr18-25472589-3	chr18	25472083	25473083	+	921.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207165.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.0	3.69	1.85	4.05	1.4	4.02	5.28	9.29	2.5
Merged-chr7-128209889-3	chr7	128209374	128210374	+	921.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3508.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	8.01	10.14	7.4	13.49	4.67	11.25	16.9	12.38	13.12
Merged-chr13-51741018-3	chr13	51740519	51741519	+	921.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	52728.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.43	1.38	0.0	4.72	1.87	9.65	5.28	4.42	6.87
Merged-chr8-4193483-3	chr8	4192985	4193985	+	921.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346730, intron 10 of 19)	intron (NM_001346730, intron 10 of 19)	23827.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	1.72	0.46	0.0	4.05	1.4	0.0	1.06	5.31	5.0
Merged-chr1-105746699-3	chr1	105746187	105747187	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-34036.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	43.48	70.04	32.37	68.15	44.32	43.4	50.7	55.27	51.84
Merged-chr6-54729937-3	chr6	54729446	54730446	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48322.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	5.72	7.37	0.0	2.02	1.4	0.0	6.34	6.19	6.87
Merged-chr14-64792754-3	chr14	64792246	64793246	+	921.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 37 of 39)	MTC|LTR|ERVL-MaLR	140215.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	7.44	7.83	1.85	18.89	6.53	3.22	6.34	6.19	0.0
Merged-chr15-103502950-2	chr15	103502428	103503428	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008800)	promoter-TSS (NM_008800)	-106.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	7.44	1.38	1.85	4.72	0.47	6.43	3.17	0.0	2.5
Merged-chr7-142373872-2	chr7	142373371	142374371	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-125.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	40.62	36.86	33.3	13.49	3.27	4.02	86.61	79.59	24.98
Merged-chr7-38001684-2	chr7	38001183	38002183	+	921.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17869.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	18.88	20.27	15.72	18.22	12.13	18.49	11.62	4.42	9.37
Merged-chr19-36348269-3	chr19	36347748	36348748	+	921.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30819.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	30.32	11.52	15.72	28.34	9.33	12.06	31.69	14.15	5.62
Merged-chr2-166460080-3	chr2	166459560	166460560	+	921.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12609.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	51.48	25.34	24.05	64.1	35.92	45.82	51.75	19.46	12.49
Merged-chr9-64173516-3	chr9	64172996	64173996	+	921.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	109.0	NM_024212	67891.0	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	194.5	217.03	158.17	178.13	184.74	222.65	228.14	239.21	156.13
Merged-chr1-92217419-3	chr1	92216921	92217921	+	921.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37080.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	105.83	129.94	88.8	112.0	79.31	104.49	108.79	97.28	89.93
Merged-chr3-27600847-3	chr3	27600354	27601354	+	921.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-15859.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	17.16	19.35	20.35	22.94	15.86	17.68	20.07	19.46	10.62
Merged-chr2-25621400-3	chr2	25620872	25621872	+	921.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040130, intron 3 of 4)	intron (NM_001040130, intron 3 of 4)	630.0	NM_001040130	51875.0	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	221.96	239.15	204.41	221.98	268.24	238.73	221.8	262.21	158.01
Merged-chr7-35269836-2	chr7	35269319	35270319	+	921.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	48621.0	NM_026181	67471.0	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	2.29	1.84	10.17	6.07	4.67	4.82	6.34	3.1	13.12
Merged-chr4-106328901-3	chr4	106328410	106329410	+	921.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183225, intron 1 of 67)	MTEb|LTR|ERVL-MaLR	12697.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	9.72	16.59	12.95	15.52	8.4	16.88	5.28	7.52	13.12
Merged-chr1-135427602-3	chr1	135427090	135428090	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357578, intron 1 of 24)	intron (NM_001357578, intron 1 of 24)	2901.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	36.61	35.94	62.9	23.62	12.6	15.27	14.79	10.17	20.61
Merged-chr12-25316184-2	chr12	25315691	25316691	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	187017.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	6.29	4.15	1.85	3.37	5.13	1.61	4.22	3.1	3.12
Merged-chr7-42490579-1	chr7	42490079	42491079	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309388, intron 2 of 6)	intron (NM_001309388, intron 2 of 6)	15174.0	NM_001309389	434178.0	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	14.87	14.28	24.05	11.47	6.53	8.04	17.96	14.59	16.24
Merged-chr6-48968113-1	chr6	48967613	48968613	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-7030.0	NM_001029987	243376.0	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	1.14	3.23	1.85	2.7	1.4	1.61	2.11	0.0	1.25
Merged-chr2-32547831-1	chr2	32547331	32548331	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	12472.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	44.62	43.77	27.75	45.88	41.52	33.76	33.8	25.2	15.61
Merged-chr18-17748783-1	chr18	17748283	17749283	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-167793.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	5.15	5.53	7.4	10.8	12.13	12.86	1.06	9.73	5.62
Merged-chr12-16634218-2	chr12	16633716	16634716	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19254.0	NM_001361702	18217.0	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT-R-2|NT2R|NTR2|NTRL	neurotensin receptor 2	protein-coding	8.01	4.61	1.85	6.75	2.33	1.61	2.11	1.77	0.62
Merged-chr4-89353355-1	chr4	89352855	89353855	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42323.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	3.43	8.29	0.0	8.77	6.06	16.08	5.28	3.1	5.0
Merged-chr11-88067969-3	chr11	88067449	88068449	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016686)	promoter-TSS (NM_016686)	-330.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	86.95	87.55	104.52	107.95	85.37	90.83	153.15	117.17	60.58
Merged-chr10-7062765-1	chr10	7062265	7063265	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39580.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	37.76	49.3	18.5	39.81	20.06	21.7	22.18	11.5	13.74
Merged-chr17-64752334-1	chr17	64751834	64752834	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-14777.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	28.03	23.04	57.35	47.23	40.12	64.3	20.07	13.71	28.1
Merged-chr19-5787246-3	chr19	5786778	5787778	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8703.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	43.48	32.72	27.75	31.71	34.06	51.44	46.47	44.66	28.1
Merged-chr2-131239734-3	chr2	131239197	131240197	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206382, intron 3 of 7)	PB1D10|SINE|Alu	5634.0	NM_144888	228607.0	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	26.89	28.11	38.85	39.81	20.53	26.53	22.18	23.88	24.98
Merged-chr1-180268806-3	chr1	180268286	180269286	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	15.45	1.84	0.92	9.45	3.73	6.43	7.39	3.98	1.87
Merged-chr11-9379352-1	chr11	9378852	9379852	+	921.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	187410.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.43	3.23	14.8	3.37	1.87	3.22	3.17	2.21	2.5
Merged-chr2-73462482-1	chr2	73461982	73462982	+	921.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-8593.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	29.75	15.21	22.2	38.46	13.06	13.66	35.91	16.8	18.74
Merged-chr17-84878052-3	chr17	84877563	84878563	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78678.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	9.72	5.99	16.65	17.54	21.93	12.86	19.01	9.29	12.49
Merged-chr12-84217648-3	chr12	84217155	84218155	+	921.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1226.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	77.23	78.33	73.07	101.88	66.24	71.54	68.65	81.8	50.59
Merged-chr13-67331302-3	chr13	67330801	67331801	+	920.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177622, intron 1 of 4)	ID_B1|SINE|B4	1259.0	NM_177622	218314.0	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	22.88	27.65	13.87	16.19	10.73	16.08	25.35	15.03	16.86
Merged-chr12-32773971-3	chr12	32773468	32774468	+	920.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46367.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	18.31	28.57	16.65	33.74	18.19	10.45	41.19	30.95	13.74
Merged-chr4-63410209-3	chr4	63409694	63410694	+	920.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6749.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	69.22	41.01	35.15	56.68	28.92	47.42	67.6	49.08	17.49
Merged-chr1-24700615-2	chr1	24700118	24701118	+	920.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	21700.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	22.31	26.26	16.65	45.21	25.66	16.88	21.12	26.97	8.74
Merged-chr17-34077766-3	chr17	34077263	34078263	+	920.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14616.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	56.06	51.61	51.8	8.1	7.46	3.22	4.22	12.38	3.12
Merged-chr7-109959194-3	chr7	109958685	109959685	+	920.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021494, intron 1 of 22)	intron (NM_021494, intron 1 of 22)	1237.0	NM_021494	19347.0	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	151.02	143.76	92.5	124.82	103.56	103.69	153.15	143.7	68.7
Merged-chr12-36214560-2	chr12	36214048	36215048	+	920.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	3670.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	6.86	3.69	1.85	6.75	2.8	0.8	2.11	1.77	2.5
Merged-chr6-146125032-2	chr6	146124555	146125555	+	920.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	190933.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	5.15	7.37	5.55	16.87	11.66	8.04	12.67	8.84	8.74
Merged-chr4-118107419-2	chr4	118106915	118107915	+	920.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	27531.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	160.18	163.58	96.2	283.38	313.96	161.56	87.66	87.55	18.74
Merged-chr14-63411164-3	chr14	63410663	63411663	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	6024.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	149.88	176.02	135.04	141.69	184.74	193.71	157.37	203.84	74.94
Merged-chr19-32387956-3	chr19	32387413	32388413	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362423, exon 1 of 10)	5' UTR (NM_001362423, exon 1 of 10)	136.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	45.19	26.26	20.35	53.3	33.12	21.7	26.4	16.36	13.74
Merged-chr17-24171326-3	chr17	24170812	24171812	+	920.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1634.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	374.7	308.26	198.87	243.57	178.21	167.19	334.81	435.09	191.11
Merged-chr7-98360232-3	chr7	98359752	98360752	+	920.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168540, intron 1 of 2)	intron (NM_001168540, intron 1 of 2)	1036.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	78.37	73.73	68.45	85.69	82.57	73.95	107.73	91.53	68.7
Merged-chr2-124613685-3	chr2	124613207	124614207	+	920.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	3411.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	163.61	167.73	132.27	151.81	124.09	123.78	158.43	156.09	91.81
Merged-chr11-70447594-3	chr11	70447109	70448109	+	920.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4322.0	NM_025397	66172.0	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	80.66	62.21	71.22	53.98	43.39	49.83	59.15	46.43	47.46
Merged-chr7-78865066-3	chr7	78864580	78865580	+	920.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17869.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	7.44	11.98	23.12	12.14	10.73	15.27	14.79	9.73	8.12
Merged-chr9-58249749-3	chr9	58249220	58250220	+	920.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311088)	promoter-TSS (NM_001311088)	66.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	100.68	124.87	123.02	114.03	119.43	144.68	176.38	176.42	111.17
Merged-chr10-118768020-2	chr10	118767522	118768522	+	920.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100881.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	11.44	8.29	1.85	14.17	7.0	3.22	23.24	8.84	9.99
Merged-chr10-19002253-2	chr10	19001826	19002826	+	920.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009397, exon 9 of 9)	3' UTR (NM_009397, exon 9 of 9)	9637.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	7.44	7.37	6.47	10.12	1.4	9.65	11.62	3.1	3.75
Merged-chr7-4410086-2	chr7	4409586	4410586	+	920.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12342.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	23.45	21.2	7.4	12.14	12.6	28.94	25.35	24.32	32.48
Merged-chr1-97714899-3	chr1	97714404	97715404	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	-52886.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	21.74	24.88	20.35	31.71	12.6	18.49	22.18	17.24	25.61
Merged-chr1-132317573-3	chr1	132317076	132318076	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	1451.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	111.55	99.99	96.2	86.36	88.17	90.83	114.07	122.92	73.07
Merged-chr9-57421415-3	chr9	57420910	57421910	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	18326.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	10.87	5.53	8.32	8.77	6.53	4.02	6.34	8.4	2.5
Merged-chr1-179073156-3	chr1	179072663	179073663	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 8 of 11)	L3b|LINE|CR1	444878.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	8.01	2.3	7.4	11.47	2.33	0.8	4.22	5.31	1.25
Merged-chr7-4078490-3	chr7	4078002	4079002	+	920.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-15298.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	13.73	11.52	24.05	10.12	12.13	13.66	6.34	9.29	16.86
Merged-chr2-14242539-3	chr2	14242049	14243049	+	920.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 2 of 29)	intron (NM_008625, intron 2 of 29)	13135.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	49.2	62.67	64.75	52.63	42.45	51.44	68.65	80.47	47.46
Merged-chr4-3812670-3	chr4	3812178	3813178	+	920.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	22977.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	22.88	20.27	15.72	16.19	7.46	32.96	28.52	27.86	33.1
Merged-chrX-102090787-3	chrX	102090308	102091308	+	920.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163610, exon 8 of 8)	3' UTR (NM_001163610, exon 8 of 8)	-19501.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	8.58	7.83	1.85	6.75	2.8	3.22	3.17	3.1	3.75
Merged-chr12-26356387-3	chr12	26355893	26356893	+	920.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130981, intron 2 of 4)	intron (NR_130981, intron 2 of 4)	9683.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	7.44	1.84	3.7	3.37	2.33	0.0	1.06	1.77	0.0
Merged-chr1-86529101-3	chr1	86528619	86529619	+	920.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008972, intron 1 of 4)	intron (NM_008972, intron 1 of 4)	2562.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	68.07	49.3	33.3	52.63	34.52	52.25	36.97	45.1	23.11
Merged-chr10-7037420-1	chr10	7036920	7037920	+	920.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302795, exon 6 of 6)	3' UTR (NM_001302795, exon 6 of 6)	-14235.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	18.88	8.29	0.0	10.8	12.13	8.84	4.22	0.88	6.25
Merged-chr17-23719682-2	chr17	23719173	23720173	+	920.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6663.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	13.73	11.06	16.65	14.84	10.26	20.09	6.34	0.44	0.62
Merged-chr8-70816873-3	chr8	70816362	70817362	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008353, intron 11 of 15)	CpG	8413.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.58	0.46	0.0	24.96	11.2	9.65	6.34	3.98	5.62
Merged-chr5-136429830-3	chr5	136429338	136430338	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-54035.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	23.45	11.06	15.72	22.94	9.33	20.09	21.12	11.94	18.74
Merged-chrX-61722642-3	chrX	61722126	61723126	+	920.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13010.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	26.31	38.71	38.85	43.18	43.85	52.25	103.51	85.78	53.08
Merged-chr18-50065152-1	chr18	50064652	50065652	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-11490.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	23.45	28.57	29.6	35.09	20.53	17.68	25.35	27.41	28.73
Merged-chr18-47318944-1	chr18	47318444	47319444	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	49924.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	6.86	1.38	6.47	3.37	5.13	4.02	0.0	2.65	2.5
Merged-chr14-70889976-3	chr14	70889465	70890465	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-142.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	31.46	24.42	43.47	25.64	23.33	77.97	24.29	14.59	11.24
Merged-chr11-89098284-3	chr11	89097792	89098792	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	24451.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	26.89	17.97	18.5	6.75	0.93	4.82	34.85	25.65	2.5
Merged-chr8-71702711-1	chr8	71702211	71703211	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-911.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	5.15	1.84	8.32	10.8	3.73	3.22	11.62	1.77	1.25
Merged-chr6-8770652-1	chr6	8770152	8771152	+	920.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	7832.0	NM_010492	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.72	3.69	7.4	3.37	5.13	9.65	4.22	2.21	2.5
Merged-chr13-52189731-3	chr13	52189220	52190220	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	92979.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	14.87	11.52	18.5	14.84	11.2	17.68	12.67	12.82	13.12
Merged-chr10-40094966-3	chr10	40094453	40095453	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	B3A|SINE|B2	47301.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	47.48	69.12	57.35	82.99	82.11	59.48	76.05	53.94	43.72
Merged-chr5-62760394-3	chr5	62759909	62760909	+	920.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	RSINE1|SINE|B4	5768.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	56.63	48.84	29.6	59.38	31.72	45.01	54.92	42.89	30.6
Merged-chr18-6107970-2	chr18	6107459	6108459	+	920.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039692, intron 3 of 18)	intron (NM_001039692, intron 3 of 18)	28139.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	14.3	16.13	24.05	15.52	16.79	16.88	12.67	11.5	11.24
Merged-chr14-59556296-3	chr14	59555715	59556715	+	920.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41744.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	8.01	5.07	0.0	10.12	11.66	17.68	15.84	11.5	8.74
Merged-chr1-64297013-3	chr1	64296526	64297526	+	920.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-175637.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	69.22	80.64	61.05	67.47	60.18	88.42	51.75	88.88	59.33
Merged-chr1-82291543-3	chr1	82290981	82291981	+	920.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010570)	promoter-TSS (NM_010570)	-42.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	4.0	0.92	2.77	4.05	1.4	0.0	5.28	1.77	5.0
Merged-chr1-91092628-3	chr1	91092107	91093107	+	920.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	39163.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	38.33	24.42	20.35	35.76	19.13	20.9	53.87	42.45	5.0
Merged-chr19-11818883-2	chr19	11818387	11819387	+	920.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153434, exon 1 of 12)	non-coding (NR_153434, exon 1 of 12)	516.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	196.21	197.68	181.29	239.52	230.92	161.56	250.32	267.07	134.9
Merged-chr17-17884996-3	chr17	17884506	17885506	+	920.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1067.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	10.87	20.74	27.75	6.75	14.0	28.94	19.01	26.09	18.74
Merged-chr4-117146376-3	chr4	117145880	117146880	+	920.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8194.0	NR_028524	100217424.0		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	5.72	5.99	7.4	4.05	2.8	8.84	1.06	2.65	3.75
Merged-chr19-46510997-3	chr19	46510509	46511509	+	920.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	9361.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	200.79	169.11	142.44	170.7	120.83	114.14	177.44	221.08	103.67
Merged-chr19-56398509-3	chr19	56398018	56399018	+	920.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1389.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	12.59	21.2	14.8	14.17	16.79	9.65	21.12	18.13	19.36
Merged-chr1-89581237-4	chr1	89580676	89581676	+	920.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	CpG	102716.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	31.46	10.6	25.9	37.11	28.46	20.9	11.62	3.1	9.99
Merged-chr4-102792483-3	chr4	102791988	102792988	+	920.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32353.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	48.05	60.36	47.17	73.54	66.24	59.48	61.26	58.81	14.36
Merged-chr19-4112371-2	chr19	4111879	4112879	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_075078, exon 22 of 24)	non-coding (NR_075078, exon 22 of 24)	9196.0	NM_001276284	11632.0	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	24.03	19.35	19.42	29.69	27.52	49.83	34.85	35.82	19.98
Merged-chr6-137570873-2	chr6	137570376	137571376	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001271595, exon 1 of 21)	5' UTR (NM_001271595, exon 1 of 21)	133.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.29	0.92	3.7	11.47	5.13	3.22	9.51	7.96	5.0
Merged-chr15-58989635-1	chr15	58989135	58990135	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	55825.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	145.3	137.31	66.6	238.18	232.32	167.19	139.42	106.56	58.71
Merged-chr2-30441239-3	chr2	30440738	30441738	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	25188.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	138.44	184.31	135.04	163.28	140.89	172.01	201.73	271.93	136.77
Merged-chr15-78773530-3	chr15	78773032	78774032	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008595)	promoter-TSS (NM_008595)	-87.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	17.73	11.06	13.87	29.69	18.66	28.94	34.85	32.72	21.23
Merged-chr9-48410761-1	chr9	48410261	48411261	+	920.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43583.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	1.72	1.38	0.92	0.67	1.4	1.61	71.82	79.15	56.83
Merged-chr10-14017895-2	chr10	14017392	14018392	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	51513.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	9.15	3.69	5.55	14.84	5.6	9.65	7.39	4.86	2.5
Merged-chr16-91899726-2	chr16	91899240	91900240	+	920.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 33 of 38)	intron (NM_010587, intron 33 of 38)	31890.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.86	3.23	0.0	1.35	3.73	1.61	7.39	3.1	2.5
Merged-chr14-54383896-2	chr14	54383409	54384409	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23068.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	108.69	135.93	92.5	144.39	113.83	134.23	89.78	110.1	38.72
Merged-chr13-5804384-2	chr13	5803867	5804867	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53725.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	441.63	475.53	185.92	439.24	501.03	274.9	334.81	498.32	217.34
Merged-chr7-28430714-3	chr7	28430212	28431212	+	920.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	5479.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	24.6	29.95	24.97	28.34	17.26	23.31	22.18	23.43	23.73
Merged-chr12-76377951-3	chr12	76377456	76378456	+	920.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7690.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	25.17	20.74	21.27	21.59	26.59	24.11	61.26	68.09	39.35
Merged-chr9-62058263-3	chr9	62057787	62058787	+	920.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033320, exon 3 of 3)	3' UTR (NM_033320, exon 3 of 3)	12319.0	NM_033320	93683.0	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding	25.17	23.5	35.15	17.54	22.86	16.08	33.8	21.67	11.24
Merged-chr5-106709758-3	chr5	106709252	106710252	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12922.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	9.72	12.9	20.35	9.45	16.33	7.23	12.67	12.38	7.49
Merged-chr6-129375282-3	chr6	129374793	129375793	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001204223)	TTS (NM_001204223)	10210.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	14.3	8.29	1.85	9.45	7.0	1.61	12.67	8.84	5.0
Merged-chr16-65582898-3	chr16	65582403	65583403	+	920.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-20206.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	8.01	5.99	3.7	8.1	5.13	3.22	10.56	7.96	7.49
Merged-chr8-77550366-3	chr8	77549857	77550857	+	920.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081240, intron 1 of 11)	MER20|DNA|hAT-Charlie	960.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	41.76	40.55	26.82	47.23	43.39	25.72	48.58	35.82	24.98
Merged-chr2-165819691-3	chr2	165819198	165820198	+	920.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027230, intron 13 of 23)	intron (NM_027230, intron 13 of 23)	38475.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.86	5.99	1.85	10.12	6.06	4.82	9.51	5.75	2.5
Merged-chr15-40953820-3	chr15	40953307	40954307	+	920.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-219894.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	29.75	18.43	8.32	35.09	37.79	28.13	24.29	31.39	33.1
Merged-chr3-95672660-3	chr3	95672161	95673161	+	920.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13940.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	96.11	82.48	127.64	88.39	57.38	77.97	105.62	120.71	71.2
Merged-chr4-12021417-1	chr4	12020917	12021917	+	920.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54843.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	5.72	2.76	0.0	8.77	4.67	4.82	1.06	5.75	0.0
Merged-chr8-117054320-3	chr8	117053826	117054826	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 14 of 42)	intron (NM_029686, intron 14 of 42)	28123.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	56.63	48.38	38.85	60.05	36.39	58.68	65.48	47.75	29.35
Merged-chr1-36130487-3	chr1	36129979	36130979	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13834.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	40.04	17.05	22.2	188.92	176.34	133.43	98.23	121.15	61.2
Merged-chr14-73120179-3	chr14	73119682	73120682	+	920.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22328.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	22.31	25.8	29.6	22.27	11.66	43.4	41.19	22.99	28.1
Merged-chr5-106681112-3	chr5	106680615	106681615	+	920.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	15715.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	13.73	17.51	24.97	10.8	6.06	20.9	6.34	9.73	1.25
Merged-chr15-55291986-3	chr15	55291498	55292498	+	920.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15752.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.0	3.23	0.0	1.35	2.8	1.61	4.22	1.77	0.62
Merged-chr17-85458244-1	chr17	85457744	85458744	+	920.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028576, exon 11 of 11)	3' UTR (NM_028576, exon 11 of 11)	160152.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	1.72	3.23	0.0	2.7	2.8	0.8	4.22	1.77	0.0
Merged-chr1-13328534-3	chr1	13328031	13329031	+	920.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	43898.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	20.59	22.12	11.1	12.82	18.19	20.09	19.01	12.38	16.24
Merged-chr6-98513475-3	chr6	98512977	98513977	+	920.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170723.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	22.88	17.51	12.02	32.39	20.99	11.25	20.07	17.69	24.98
Merged-chr15-89075385-3	chr15	89074873	89075873	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355617)	promoter-TSS (NM_001355617)	481.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	182.49	217.03	162.79	172.05	177.27	167.99	186.94	197.65	122.41
Merged-chr2-113391136-3	chr2	113390627	113391627	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-49937.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	1.14	3.23	0.0	2.02	3.27	0.0	0.0	2.21	3.75
Merged-chr1-171102377-3	chr1	171101857	171102857	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19304.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	58.35	35.94	31.45	58.03	42.92	30.54	12.67	21.22	22.48
Merged-chr3-121603012-3	chr3	121602518	121603518	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	40467.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	6.29	17.51	12.95	10.8	12.13	32.15	21.12	20.34	33.1
Merged-chr4-70420692-3	chr4	70420210	70421210	+	920.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10275.0	NM_145990	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	30.32	51.15	27.75	22.27	34.06	37.78	34.85	36.7	25.61
Merged-chr7-29767244-3	chr7	29766778	29767778	+	920.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1274.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	42.33	62.21	32.37	29.01	35.92	42.6	46.47	44.22	35.6
Merged-chr9-65745631-3	chr9	65745120	65746120	+	920.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	RSINE1|SINE|B4	69072.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	12.01	18.89	10.17	15.52	11.2	6.43	7.39	4.42	6.25
Merged-chr2-129604289-3	chr2	129603786	129604786	+	920.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8824.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	64.07	66.81	27.75	45.21	42.92	45.82	66.54	65.0	33.1
Merged-chr2-129175822-3	chr2	129175335	129176335	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4838.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	8.01	6.91	1.85	16.19	9.33	12.06	8.45	3.98	14.99
Merged-chr13-81233070-3	chr13	81232548	81233548	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	MIR|SINE|MIR	268974.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	37.18	27.65	22.2	31.71	34.52	41.8	26.4	19.9	23.11
Merged-chr9-106223224-3	chr9	106222734	106223734	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031178, intron 1 of 1)	intron (NM_031178, intron 1 of 1)	636.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	148.16	121.65	102.67	106.61	83.97	69.93	160.54	119.83	86.81
Merged-chr8-92846798-3	chr8	92846278	92847278	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008610, intron 11 of 12)	intron (NM_008610, intron 11 of 12)	-8555.0	NM_173014	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	9.15	4.61	2.77	5.4	2.33	6.43	11.62	11.05	8.74
Merged-chrX-12886627-6	chrX	12886132	12887132	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50241.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	40.62	37.32	10.17	63.42	75.11	49.83	47.53	36.7	16.24
Merged-chr17-87602347-3	chr17	87601849	87602849	+	920.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33630.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	17.73	14.28	10.17	15.52	15.39	23.31	43.3	25.65	14.99
Merged-chr16-76192062-3	chr16	76191573	76192573	+	920.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER92-int|LTR|ERV1	69460.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	12.01	17.97	5.55	12.82	7.0	24.11	21.12	15.92	16.24
Merged-chr1-165718502-3	chr1	165717992	165718992	+	920.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10398.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	118.42	133.17	123.94	111.33	131.56	163.17	106.67	142.82	120.53
Merged-chr1-135544979-3	chr1	135544477	135545477	+	920.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 1 of 28)	intron (NM_173437, intron 1 of 28)	40378.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	5.15	3.69	0.92	4.05	2.33	0.8	4.22	2.21	2.5
Merged-chr8-70600901-3	chr8	70600419	70601419	+	920.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 4 of 16)	intron (NM_133772, intron 4 of 16)	6438.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	30.89	23.96	29.6	14.17	16.33	24.92	25.35	23.88	20.61
Merged-chr2-173062196-2	chr2	173061719	173062719	+	920.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40317.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	4.0	0.46	7.4	6.07	3.73	9.65	7.39	2.65	1.25
Merged-chr5-118633310-3	chr5	118632898	118633898	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	72679.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	30.32	23.04	23.12	28.34	17.73	23.31	11.62	5.31	3.75
Merged-chr7-127118036-3	chr7	127117531	127118531	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	3998.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	45.76	42.39	56.42	101.21	82.11	60.28	119.35	119.83	61.83
Merged-chr8-106394594-3	chr8	106394090	106395090	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20749.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	44.62	45.16	66.6	34.41	38.72	62.7	52.81	54.83	34.97
Merged-chr17-70985691-3	chr17	70985192	70986192	+	920.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	4824.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	29.75	28.11	25.9	32.39	21.93	28.13	28.52	32.72	29.98
Merged-chr1-144240118-2	chr1	144239574	144240574	+	920.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	9030.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	15.45	6.91	0.0	10.12	6.06	1.61	7.39	6.63	5.0
Merged-chr9-114743648-2	chr9	114743149	114744149	+	920.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026036, intron 3 of 3)	intron (NM_026036, intron 3 of 3)	12446.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	90.38	63.59	45.32	67.47	63.91	65.11	105.62	106.12	71.2
Merged-chr2-113453722-2	chr2	113453227	113454227	+	920.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	12663.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	14.87	14.75	12.95	14.84	28.46	22.51	27.46	26.97	11.24
Merged-chr9-56100198-3	chr9	56099711	56100711	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	ORR1F|LTR|ERVL-MaLR	10235.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	17.16	6.91	24.05	16.87	14.0	21.7	25.35	13.71	12.49
Merged-chr9-122886913-3	chr9	122886415	122887415	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1556.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	56.63	41.93	19.42	33.74	48.05	51.44	83.44	50.85	36.22
Merged-chr3-106482560-3	chr3	106482056	106483056	+	920.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	106.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	78.94	40.55	28.67	76.92	50.38	57.87	67.6	73.84	41.22
Merged-chr8-70854017-1	chr8	70853517	70854517	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032397, intron 3 of 9)	intron (NM_032397, intron 3 of 9)	2991.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	2.86	1.84	0.0	3.37	1.4	3.22	2.11	2.21	2.5
Merged-chr14-62800218-1	chr14	62799718	62800718	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045503, intron 2 of 6)	MLT2B4|LTR|ERVL	-37472.0	NM_175546	268752.0	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	9.15	8.29	7.4	8.77	7.46	4.02	4.22	2.65	5.0
Merged-chr19-5847359-1	chr19	5846859	5847859	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1879.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	455.35	419.31	296.91	445.99	389.07	308.65	362.27	469.14	206.72
Merged-chr10-56792571-1	chr10	56792071	56793071	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	360590.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	94.96	89.85	60.12	107.95	69.51	135.04	68.65	64.11	68.07
Merged-chr2-25256626-1	chr2	25256126	25257126	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_177344)	TTS (NM_177344)	1187.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	138.44	113.81	68.45	22.27	28.92	12.86	28.52	27.41	18.74
Merged-chr10-79994701-2	chr10	79994224	79995224	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007725, exon 7 of 7)	3' UTR (NM_007725, exon 7 of 7)	-2884.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	11.44	7.83	15.72	13.49	8.86	13.66	13.73	12.82	7.49
Merged-chr5-123827749-1	chr5	123827249	123828249	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37767.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	9.15	8.29	3.7	4.05	6.06	1.61	9.51	3.54	5.62
Merged-chr2-44313876-1	chr2	44313376	44314376	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-248552.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	1.72	2.3	9.25	4.72	5.13	5.63	2.11	7.52	7.49
Merged-chr4-3724899-3	chr4	3724398	3725398	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	9934.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	102.4	95.84	68.45	91.76	55.51	68.32	96.11	77.82	50.59
Merged-chr3-41587768-3	chr3	41587270	41588270	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22890.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	15.45	18.89	20.35	21.59	29.39	40.19	24.29	17.24	24.98
Merged-chr1-56902943-1	chr1	56902443	56903443	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	68391.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.0	2.76	4.62	1.35	5.6	14.47	0.0	2.21	3.12
Merged-chr2-31075366-3	chr2	31074877	31075877	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	21123.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	27.46	33.18	19.42	44.53	39.19	40.99	15.84	28.3	12.49
Merged-chr11-72215625-3	chr11	72215124	72216124	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026068)	promoter-TSS (NM_026068)	-32.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	224.82	250.21	157.24	120.1	111.03	92.44	118.29	146.8	63.7
Merged-chr1-79762994-3	chr1	79762491	79763491	+	920.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1222.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	14.87	23.5	12.95	27.66	21.46	28.13	179.55	163.6	76.82
Merged-chr5-130030010-1	chr5	130029510	130030510	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007761, intron 1 of 5)	MTD|LTR|ERVL-MaLR	704.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	66.93	86.63	58.27	70.17	67.64	74.75	46.47	74.73	40.59
Merged-chr4-87700676-1	chr4	87700176	87701176	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105647.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.72	4.61	1.85	3.37	2.8	3.22	1.06	1.33	4.37
Merged-chr1-182368948-1	chr1	182368448	182369448	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27342.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	10.3	5.53	0.0	14.17	11.66	4.82	14.79	10.17	5.62
Merged-chr10-69240757-1	chr10	69240257	69241257	+	920.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	27563.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	9.72	10.6	9.25	12.14	10.73	34.56	26.4	11.5	14.36
Merged-chr3-121580118-3	chr3	121579597	121580597	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	12.01	5.99	3.7	1.35	3.73	8.04	11.62	2.65	5.0
Merged-chr11-49901798-3	chr11	49901305	49902305	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347462)	promoter-TSS (NM_001347462)	-30.0	NM_029004	74563.0	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0.57	0.92	1.85	2.7	0.47	0.0	1.06	0.88	0.62
Merged-chr18-80041831-3	chr18	80041317	80042317	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5078.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	13.73	8.75	15.72	4.05	7.0	12.86	8.45	2.65	3.75
Merged-chr11-120515709-3	chr11	120515164	120516164	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15063.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	6.86	5.99	0.0	8.77	4.67	3.22	5.28	4.42	2.5
Merged-chr4-124700616-3	chr4	124700123	124701123	+	919.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010213)	promoter-TSS (NM_010213)	-76.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	17.73	18.89	18.5	33.74	27.52	49.83	23.24	22.99	13.12
Merged-chr19-59036967-2	chr19	59036467	59037467	+	919.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	39102.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	46.34	34.1	19.42	26.31	14.46	8.04	11.62	17.24	6.87
Merged-chr5-105586905-2	chr5	105586408	105587408	+	919.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	67437.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	24.6	10.6	21.27	34.41	14.93	12.86	10.56	15.03	9.37
Merged-chr17-26234676-3	chr17	26234174	26235174	+	919.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B2_Mm2|SINE|B2	9568.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	111.55	117.96	76.77	118.75	105.9	112.53	171.1	189.69	88.68
Merged-chr7-100458353-3	chr7	100457870	100458870	+	919.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 31 of 32)	intron (NM_001017985, intron 31 of 32)	-14621.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	109.83	79.25	67.52	101.21	73.71	100.47	19.01	20.34	21.23
Merged-chr11-4848851-4	chr11	4848345	4849345	+	919.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	CpG	699.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	191.64	174.18	154.47	188.25	159.55	134.23	234.47	158.74	101.8
Merged-chr1-64119847-4	chr1	64119278	64120278	+	919.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	1611.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	139.01	149.75	100.82	146.41	106.36	172.01	149.98	179.08	128.03
Merged-chr18-88823977-3	chr18	88823481	88824481	+	919.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70226.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	22.31	23.5	22.2	29.01	22.86	23.31	20.07	22.11	14.99
Merged-chr16-24933457-2	chr16	24932960	24933960	+	919.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-126179.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	241.41	230.39	141.52	230.75	194.53	209.79	250.32	268.4	153.01
Merged-chr11-70437191-2	chr11	70436699	70437699	+	919.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 6 of 14)	intron (NM_145429, intron 6 of 14)	-1056.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	66.93	46.54	36.07	56.68	35.45	69.93	55.98	64.11	67.45
Merged-chr8-108316391-3	chr8	108315909	108316909	+	919.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	268268.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	22.88	31.33	44.4	24.29	14.46	34.56	28.52	28.74	39.35
Merged-chr10-20060811-2	chr10	20060300	20061300	+	919.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 10 of 29)	intron (NM_008580, intron 10 of 29)	-88120.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	31.46	10.6	7.4	35.09	12.6	8.04	8.45	2.65	9.37
Merged-chr2-130930137-1	chr2	130929637	130930637	+	919.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	23642.0	NM_009730	11990.0	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.57	5.99	6.47	9.45	5.6	4.02	5.28	2.21	1.25
Merged-chr10-111673039-7	chr10	111672553	111673553	+	919.780945	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78780.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	64.07	69.12	64.75	82.99	59.71	56.27	63.37	59.25	29.98
Merged-chr4-55964189-3	chr4	55963689	55964689	+	919.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-431714.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	12.59	6.45	11.1	13.49	14.93	24.92	9.51	16.8	7.49
Merged-chr13-58687834-3	chr13	58687314	58688314	+	919.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	74497.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	24.6	31.79	39.77	21.59	16.33	40.99	20.07	21.67	16.24
Merged-chr12-73359736-1	chr12	73359236	73360236	+	919.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49827.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.0	2.3	2.77	2.02	2.33	1.61	11.62	5.31	12.49
Merged-chr2-91723210-2	chr2	91722703	91723703	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6935.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	45.76	32.25	36.07	63.42	61.11	64.3	35.91	50.41	34.35
Merged-chr14-70792781-1	chr14	70792281	70793281	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18400.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	5.72	6.45	9.25	9.45	13.53	10.45	7.39	3.1	6.25
Merged-chr13-112602793-2	chr13	112602296	112603296	+	919.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145885, intron 18 of 21)	intron (NM_001145885, intron 18 of 21)	-22134.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	4.58	3.23	11.1	11.47	13.53	15.27	43.3	31.84	21.86
Merged-chr15-36716096-6	chr15	36715568	36716568	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74864.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	69.22	59.9	15.72	46.56	34.06	19.29	76.05	61.46	35.6
Merged-chr13-52578858-4	chr13	52578299	52579299	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4638.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	110.98	58.52	80.47	116.73	57.85	79.58	91.89	87.55	71.2
Merged-chr2-21215508-3	chr2	21215000	21216000	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177588)	TTS (NM_177588)	9776.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	5.72	3.69	3.7	10.12	5.13	4.82	6.34	6.63	3.75
Merged-chr10-94116466-3	chr10	94115962	94116962	+	919.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 8 of 20)	intron (NM_053072, intron 8 of 20)	-31469.0	NM_011629	22025.0	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	5.72	5.07	0.0	7.42	5.13	6.43	17.96	12.38	14.99
Merged-chr6-26454554-3	chr6	26454056	26455056	+	919.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	523130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	8.58	7.83	3.7	5.4	5.6	14.47	2.11	9.29	6.25
Merged-chr1-36684314-3	chr1	36683814	36684814	+	919.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_201365	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	5.72	7.83	0.0	6.07	5.13	8.04	6.34	1.77	2.5
Merged-chr19-41932751-3	chr19	41932246	41933246	+	919.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023740)	promoter-TSS (NM_023740)	568.0	NM_001164561	66583.0	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	42.9	43.31	35.15	53.3	55.05	49.83	73.93	40.68	45.59
Merged-chr8-124247740-2	chr8	124247241	124248241	+	919.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	MTD|LTR|ERVL-MaLR	16347.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.0	5.99	1.85	4.05	3.73	4.82	14.79	5.75	12.49
Merged-chr10-118588220-3	chr10	118587740	118588740	+	919.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31715.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	19.45	12.9	1.85	49.93	28.92	7.23	13.73	9.73	5.0
Merged-chr19-32491211-3	chr19	32490752	32491752	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 1 of 4)	intron (NM_010799, intron 1 of 4)	5483.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	56.06	58.52	44.4	49.25	47.58	44.21	85.55	75.61	41.84
Merged-chr2-34777071-5	chr2	34776545	34777545	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022310)	TTS (NM_022310)	4955.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	47.48	30.41	13.87	20.24	13.06	13.66	24.29	16.8	23.73
Merged-chr9-75625704-1	chr9	75625204	75626204	+	919.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027309)	promoter-TSS (NM_027309)	-28.0	NM_027309	70082.0	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	6.86	0.0	3.7	2.02	0.93	0.8	8.45	5.31	2.5
Merged-chr15-76799631-3	chr15	76799124	76800124	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	18546.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	31.46	37.32	24.05	33.06	24.26	47.42	30.63	22.11	36.22
Merged-chr13-66906104-3	chr13	66905603	66906603	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026219)	promoter-TSS (NM_026219)	688.0	NM_001177750	100038538.0	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	-	predicted gene 10767	protein-coding	28.6	44.24	28.67	31.71	21.93	39.39	103.51	160.51	68.07
Merged-chr11-19839109-3	chr11	19838619	19839619	+	919.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-85323.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.29	2.3	0.0	1.35	3.27	6.43	1.06	0.0	1.25
Merged-chr9-108692526-2	chr9	108692024	108693024	+	919.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008924, exon 1 of 11)	exon (NM_008924, exon 1 of 11)	381.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	177.34	164.04	149.84	152.49	123.62	158.35	148.92	148.13	104.3
Merged-chr7-125618166-3	chr7	125617654	125618654	+	919.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	intron (NM_021887, intron 1 of 8)	14725.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	91.53	62.21	53.65	89.06	61.11	64.3	77.1	62.79	42.47
Merged-chr12-36360265-3	chr12	36359761	36360761	+	919.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-21189.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	6.29	2.76	7.4	9.45	7.0	9.65	4.22	4.42	5.62
Merged-chr11-102424892-3	chr11	102424404	102425404	+	919.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5418.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	430.76	413.78	253.44	379.19	282.24	252.39	320.02	399.72	146.76
Merged-chr14-14985439-3	chr14	14984954	14985954	+	919.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 30 of 34)	intron (NM_001195229, intron 30 of 34)	164639.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	1.72	3.69	9.25	4.72	1.4	3.22	1.06	6.63	1.25
Merged-chr15-98389967-3	chr15	98389480	98390480	+	919.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8465.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	4.0	2.76	3.7	12.14	9.33	15.27	7.39	1.77	3.75
Merged-chr1-37314555-2	chr1	37314052	37315052	+	919.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	14714.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	32.04	18.43	29.6	33.06	18.19	16.88	33.8	31.84	8.74
Merged-chr8-46828600-2	chr8	46828086	46829086	+	919.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	88841.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	20.02	25.34	27.75	22.94	23.33	47.42	45.42	28.3	37.47
Merged-chr15-84987450-4	chr15	84986957	84987957	+	919.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	514.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	161.32	147.45	156.32	139.67	168.41	115.75	194.34	149.45	106.79
Merged-chr8-27043462-3	chr8	27042989	27043989	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039077, intron 1 of 4)	intron (NM_001039077, intron 1 of 4)	934.0	NM_054057	114863.0	Mm.277501	NM_054057	ENSMUSG00000031485	Plpbp	1700024N20Rik|2200002F22Rik|Prosc	pyridoxal phosphate binding protein	protein-coding	142.44	126.72	57.35	175.43	162.34	60.28	121.46	106.56	33.72
Merged-chr5-34637154-3	chr5	34636667	34637667	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356979)	promoter-TSS (NM_001356979)	45.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	27.46	17.51	36.07	28.34	30.79	30.54	57.03	42.01	20.61
Merged-chr7-18840686-3	chr7	18840205	18841205	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153760, intron 1 of 4)	intron (NM_153760, intron 1 of 4)	739.0	NM_153760	243864.0	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	8.58	9.68	9.25	24.96	24.72	36.17	58.09	61.9	43.09
Merged-chr4-118106899-3	chr4	118106377	118107377	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	28069.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	105.83	106.9	47.17	215.23	221.13	114.14	62.31	62.79	13.74
Merged-chr14-50875909-3	chr14	50875364	50876364	+	919.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5310.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	5.72	6.91	11.1	7.42	6.53	10.45	12.67	11.94	12.49
Merged-chr3-138521994-3	chr3	138521457	138522457	+	919.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4234.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	71.51	73.73	41.62	76.92	87.7	79.58	110.9	99.93	79.32
Merged-chr7-88279735-3	chr7	88279201	88280201	+	919.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	B1_Mus1|SINE|Alu	1616.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	173.33	257.12	172.97	184.87	146.95	144.68	261.93	329.41	196.73
Merged-chr16-70329680-3	chr16	70329169	70330169	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15720.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	32.61	30.41	23.12	37.78	34.06	29.74	142.59	166.7	71.2
Merged-chr14-54382691-4	chr14	54382109	54383109	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	MLTR14|LTR|ERV1	21768.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	358.11	296.75	186.84	336.68	293.43	230.69	231.3	224.62	67.45
Merged-chr18-73800055-2	chr18	73799561	73800561	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145494, intron 3 of 15)	intron (NM_145494, intron 3 of 15)	15331.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	5.15	7.37	2.77	2.7	1.87	2.41	2.11	2.21	8.74
Merged-chr15-28420910-2	chr15	28420395	28421395	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 66 of 78)	intron (NM_133365, intron 66 of 78)	217129.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	10.87	5.53	6.47	4.72	7.0	8.04	8.45	8.4	11.24
Merged-chrX-12840399-1	chrX	12839899	12840899	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78121.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	48.62	57.6	43.47	55.33	41.99	38.58	24.29	41.12	11.87
Merged-chr10-63174606-1	chr10	63174106	63175106	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 2 of 19)	intron (NM_182992, intron 2 of 19)	29346.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	7.44	15.67	14.8	29.01	30.79	31.35	7.39	18.13	11.24
Merged-chr17-50024731-2	chr17	50024234	50025234	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 7 of 9)	intron (NM_181397, intron 7 of 9)	165763.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	58.35	50.23	19.42	67.47	68.11	34.56	66.54	60.58	36.22
Merged-chr17-74529369-3	chr17	74528852	74529852	+	919.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 1 of 72)	intron (NM_007566, intron 1 of 72)	1057.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	151.02	253.89	197.94	151.14	244.92	208.98	198.56	259.11	170.5
Merged-chr17-71292142-1	chr17	71291642	71292642	+	919.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	18869.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	3.43	12.9	18.5	14.17	14.93	24.92	9.51	5.75	4.37
Merged-chr7-73531742-3	chr7	73531221	73532221	+	919.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	B4A|SINE|B4	10025.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	66.93	88.47	46.25	64.1	71.84	77.97	65.48	82.69	56.21
Merged-chr1-155049204-3	chr1	155048706	155049706	+	919.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34058.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	15.45	8.75	11.1	16.19	7.0	11.25	10.56	10.61	8.12
Merged-chr8-25992849-3	chr8	25992295	25993295	+	919.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029037, intron 1 of 4)	ORR1G|LTR|ERVL-MaLR	1326.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	50.34	58.98	53.65	65.45	73.24	55.46	76.05	68.09	50.59
Merged-chr5-121251999-4	chr5	121251410	121252410	+	919.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	31691.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	143.59	135.47	80.47	119.43	98.43	90.02	149.98	160.06	64.33
Merged-chr12-86950787-3	chr12	86950294	86951294	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	3451.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	32.61	46.08	30.52	81.64	104.5	38.58	52.81	49.08	21.23
Merged-chr13-3637073-3	chr13	3636569	3637569	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267724, intron 1 of 3)	intron (NM_001267724, intron 1 of 3)	3037.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	105.83	118.88	74.0	87.04	64.38	67.52	99.28	105.24	44.97
Merged-chr9-41157554-6	chr9	41156998	41157998	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176860, exon 1 of 14)	5' UTR (NM_176860, exon 1 of 14)	564.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	86.95	68.66	110.07	82.99	72.78	101.28	132.02	112.75	78.07
Merged-chr4-43256364-3	chr4	43255876	43256876	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 29 of 39)	intron (NM_001081413, intron 29 of 39)	-10783.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	32.61	23.04	46.25	28.34	19.59	4.02	10.56	5.31	12.49
Merged-chr13-37965619-3	chr13	37965115	37966115	+	919.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28593.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	109.26	102.75	61.05	76.92	50.85	59.48	45.42	41.56	16.86
Merged-chr1-95319097-3	chr1	95318598	95319598	+	919.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	5470.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	22.88	27.19	30.52	24.96	29.86	43.4	33.8	28.74	19.98
Merged-chr17-35779738-2	chr17	35779243	35780243	+	919.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	7293.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	5.15	7.83	4.62	22.94	2.33	5.63	35.91	30.07	14.99
Merged-chr3-109123207-5	chr3	109122725	109123725	+	919.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172685)	promoter-TSS (NM_172685)	76.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	34.32	23.04	25.9	40.48	30.79	43.4	49.64	37.58	16.24
Merged-chr19-36928140-3	chr19	36927654	36928654	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	2075.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	146.45	163.58	77.7	132.92	141.82	102.88	325.31	368.33	122.41
Merged-chr5-96803259-3	chr5	96802758	96803758	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	intron (NM_013470, intron 2 of 12)	9873.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	41.19	28.11	15.72	38.46	19.59	28.13	35.91	30.51	44.97
Merged-chrX-38439854-3	chrX	38439346	38440346	+	919.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 3 of 9)	MIRc|SINE|MIR	16614.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	29.75	57.14	12.02	55.33	50.38	25.72	41.19	69.86	13.12
Merged-chr18-55209201-3	chr18	55208700	55209700	+	919.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-216609.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.86	5.99	3.7	10.8	9.8	6.43	8.45	6.63	8.74
Merged-chr18-68905855-2	chr18	68905356	68906356	+	919.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	45672.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	10.3	13.36	11.1	24.96	24.26	24.92	6.34	4.86	0.0
Merged-chr11-111227477-2	chr11	111226978	111227978	+	919.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161314.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.86	6.45	13.87	14.17	13.06	4.02	9.51	6.19	7.49
Merged-chr1-131915872-3	chr1	131915360	131916360	+	919.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 1 of 6)	intron (NM_001145804, intron 1 of 6)	5402.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	45.19	74.19	42.55	86.36	66.24	63.5	65.48	72.52	43.09
Merged-chr3-87500327-3	chr3	87499815	87500815	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001113238, exon 12 of 12)	3' UTR (NM_001113238, exon 12 of 12)	-25263.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	47.48	76.49	58.27	62.07	45.72	57.87	22.18	16.36	11.24
Merged-chr1-176824614-3	chr1	176824115	176825115	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	9955.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	255.14	205.05	119.32	239.52	158.61	121.37	228.14	341.8	161.13
Merged-chr7-25627510-1	chr7	25627010	25628010	+	919.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-114.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	13.73	6.45	2.77	16.87	12.6	25.72	12.67	3.1	9.37
Merged-chr6-82805178-3	chr6	82804672	82805672	+	919.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-30718.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	13.16	17.51	47.17	27.66	18.19	37.78	27.46	19.46	31.85
Merged-chr17-10371583-3	chr17	10371078	10372078	+	919.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46976.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	63.5	61.28	49.02	41.83	39.65	43.4	49.64	34.05	24.36
Merged-chr1-183510931-3	chr1	183510421	183511421	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91673.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	10.87	15.67	7.4	13.49	15.39	12.06	4.22	5.75	6.87
Merged-chr15-83410403-3	chr15	83409910	83410910	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	22440.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	8.01	4.61	5.55	11.47	9.33	10.45	11.62	3.98	3.75
Merged-chrX-7839328-3	chrX	7838834	7839834	+	919.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-2497.0	NM_001290536	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	16.02	19.81	26.82	16.19	9.33	21.7	14.79	21.22	18.11
Merged-chr9-50560709-3	chr9	50560179	50561179	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025687, intron 1 of 4)	intron (NM_025687, intron 1 of 4)	589.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	39.47	41.47	26.82	42.51	30.79	31.35	50.7	34.05	18.74
Merged-chr7-114526451-3	chr7	114525950	114526950	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 11 of 15)	Lx7|LINE|L1	36522.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	30.32	33.18	22.2	22.94	14.0	26.53	25.35	23.43	20.61
Merged-chr14-70175899-2	chr14	70175437	70176437	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145978, intron 1 of 9)	intron (NM_145978, intron 1 of 9)	878.0	NM_001253736	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	108.69	115.66	108.22	101.21	78.37	108.51	121.46	112.31	103.05
Merged-chr13-60840310-3	chr13	60839808	60840808	+	919.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24108.0	NM_178098	214639.0	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	18.88	17.51	20.35	16.87	15.86	11.25	9.51	28.74	26.23
Merged-chr7-80341039-3	chr7	80340582	80341582	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133952)	promoter-TSS (NM_133952)	-863.0	NM_133952	101869.0	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	17.73	20.74	19.42	14.17	6.06	19.29	15.84	14.15	21.86
Merged-chrX-74328931-3	chrX	74328433	74329433	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008883)	promoter-TSS (NM_008883)	-133.0	NM_008883	18846.0	Mm.1685	NM_008883	ENSMUSG00000031398	Plxna3	PlexA3|Plxa3|Plxn3|Plxn4|SEX|mKIAA4078	plexin A3	protein-coding	12.01	12.44	11.1	13.49	16.79	12.06	3.17	2.21	5.0
Merged-chr14-76703610-3	chr14	76703124	76704124	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26056.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.58	2.76	1.85	4.72	0.93	1.61	1.06	5.75	3.75
Merged-chr9-32694415-3	chr9	32693910	32694910	+	919.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1632.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	9.15	10.14	9.25	27.66	10.26	8.84	4.22	5.75	8.12
Merged-chr5-76565526-3	chr5	76565032	76566032	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359370, intron 17 of 19)	B3A|SINE|B2	-26182.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	4.58	4.15	0.0	5.4	5.6	4.82	4.22	3.98	1.25
Merged-chr14-70894181-3	chr14	70893695	70894695	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302095, intron 1 of 6)	intron (NM_001302095, intron 1 of 6)	4088.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	35.47	15.67	22.2	21.59	18.66	25.72	17.96	9.29	8.12
Merged-chr9-82888878-3	chr9	82888381	82889381	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 29 of 39)	intron (NM_001081216, intron 29 of 39)	59075.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	21.17	23.96	28.67	11.47	32.66	16.88	15.84	19.9	15.61
Merged-chr1-184562463-3	chr1	184561959	184562959	+	919.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4768.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	113.84	89.39	22.2	116.73	74.64	47.42	61.26	51.73	21.86
Merged-chr10-34172998-4	chr10	34172482	34173482	+	919.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	34569.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	117.27	127.18	87.87	93.11	82.11	89.22	88.72	89.32	76.19
Merged-chr11-100327950-3	chr11	100327451	100328451	+	919.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6456.0	NM_010257	14459.0	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	20.59	10.6	36.07	22.94	7.46	15.27	8.45	12.38	8.74
Merged-chr8-72420952-3	chr8	72420450	72421450	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122832, intron 1 of 15)	CpG	524.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	96.68	80.64	59.2	72.87	78.84	76.36	60.2	53.5	61.2
Merged-chr6-72153599-3	chr6	72153109	72154109	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011375, exon 7 of 7)	exon (NM_011375, exon 7 of 7)	-30412.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	52.63	44.7	37.0	70.85	94.23	78.77	80.27	75.17	33.72
Merged-chr17-57335423-3	chr17	57334910	57335910	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-23276.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	110.41	99.99	59.2	72.19	56.91	61.89	121.46	132.65	59.33
Merged-chr16-23225304-3	chr16	23224789	23225789	+	919.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252505)	promoter-TSS (NM_001252505)	195.0	NR_152126	320099.0	Mm.326729	NR_152126		BC106179	-	cDNA sequence BC106179	ncRNA	71.51	47.92	37.0	77.59	87.7	100.47	90.83	81.8	50.59
Merged-chr13-59011697-3	chr13	59011180	59012180	+	919.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	203983.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	8.58	8.29	5.55	8.1	11.66	8.84	12.67	6.19	7.49
Merged-chr1-52648316-2	chr1	52647829	52648829	+	919.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024590, intron 7 of 8)	intron (NR_024590, intron 7 of 8)	17624.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	4.58	0.92	0.0	4.72	4.2	0.0	3.17	1.77	0.0
Merged-chr4-134099436-3	chr4	134098941	134099941	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-3142.0	NR_045571	67586.0	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	229.97	198.14	148.92	145.06	106.36	114.94	199.62	218.43	140.52
Merged-chr13-107832957-3	chr13	107832465	107833465	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	57099.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	40.04	32.72	25.9	24.96	20.06	19.29	70.76	84.01	31.85
Merged-chr8-124250988-3	chr8	124250494	124251494	+	919.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	19600.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	14.87	14.28	0.92	15.52	7.46	12.86	58.09	39.8	19.98
Merged-chr2-9989853-3	chr2	9989346	9990346	+	919.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58763.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	22.88	22.58	5.55	24.96	18.66	14.47	28.52	28.3	9.99
Merged-chr2-127397917-3	chr2	127397427	127398427	+	919.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27272.0	NM_001081089	215456.0	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	38.9	47.92	26.82	33.06	21.46	41.8	73.93	68.09	42.47
Merged-chr7-67528365-4	chr7	67527889	67528889	+	919.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	116847.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	62.93	58.98	35.15	51.95	29.39	49.83	19.01	16.8	18.74
Merged-chr10-43742874-3	chr10	43742370	43743370	+	919.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-3288.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	16.59	9.22	13.87	18.22	17.73	11.25	14.79	18.57	18.74
Merged-chr4-121041107-3	chr4	121040591	121041591	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007741, intron 2 of 31)	intron (NM_007741, intron 2 of 31)	1525.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	1.14	7.83	0.0	8.1	1.4	0.8	7.39	1.77	1.25
Merged-chr19-16200452-1	chr19	16199952	16200952	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	36354.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	9.72	11.98	16.65	7.42	6.53	17.68	8.45	7.52	9.99
Merged-chr17-86145156-4	chr17	86144599	86145599	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030133)	promoter-TSS (NM_030133)	76.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	30.89	25.34	24.05	25.64	30.32	24.11	34.85	16.8	20.61
Merged-chr5-120775880-1	chr5	120775380	120776380	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145226, intron 1 of 15)	RLTR11A|LTR|ERVK	1779.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	25.74	25.8	35.15	33.06	39.19	35.37	31.69	30.51	9.99
Merged-chr6-136904448-1	chr6	136903948	136904948	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17732.0	NM_026983	69187.0	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	2.29	0.92	3.7	4.72	4.2	2.41	6.34	2.21	6.25
Merged-chr2-31025715-3	chr2	31025213	31026213	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177649)	TTS (NM_001177649)	43434.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	16.02	13.36	20.35	13.49	7.46	28.13	22.18	9.29	16.24
Merged-chr19-41265845-3	chr19	41265344	41266344	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1840.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	17.16	14.75	9.25	20.24	4.67	4.82	10.56	11.5	24.36
Merged-chr4-134714164-3	chr4	134713656	134714656	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-9866.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	6.29	3.69	3.7	7.42	3.73	3.22	2.11	3.1	7.49
Merged-chr4-132007373-3	chr4	132006863	132007863	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001128606, exon 2 of 18)	exon (NM_001128606, exon 2 of 18)	41715.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	159.6	177.86	137.82	193.64	121.29	136.64	175.33	208.7	118.04
Merged-chr2-174109870-1	chr2	174109370	174110370	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213733)	promoter-TSS (NM_213733)	-481.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	40.62	55.75	105.44	42.51	45.72	67.52	99.28	84.45	49.96
Merged-chr17-37085346-1	chr17	37084846	37085846	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146477, exon 1 of 1)	exon (NM_146477, exon 1 of 1)	890.0	NM_146477	258469.0	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	18.31	14.75	24.05	3.37	0.0	8.84	0.0	1.33	0.0
Merged-chr6-43644044-1	chr6	43643544	43644544	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	22234.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	5.72	10.6	9.25	9.45	6.53	8.04	4.22	5.31	2.5
Merged-chr6-37231306-3	chr6	37230808	37231808	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	68668.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	18.31	7.37	0.0	11.47	11.2	18.49	8.45	11.94	3.75
Merged-chr3-36496954-3	chr3	36496462	36497462	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9847.0	NR_040590	329623.0	Mm.490730	NR_040590	ENSMUSG00000085320	Gm11548	E330009D11	predicted gene 11548	ncRNA	10.3	2.76	1.85	4.05	2.8	4.82	3.17	0.88	7.49
Merged-chr15-39198257-1	chr15	39197757	39198757	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256382)	promoter-TSS (NM_001256382)	-29.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.72	0.46	1.85	2.02	0.47	2.41	2.11	0.44	0.0
Merged-chr1-80676422-3	chr1	80675923	80676923	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-11071.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	26.31	33.18	28.67	22.27	19.13	26.53	25.35	27.41	21.23
Merged-chr3-32396326-1	chr3	32395826	32396826	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30661.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	174.48	236.38	136.89	132.24	146.48	151.11	155.26	187.04	111.17
Merged-chr17-53980098-1	chr17	53979598	53980598	+	919.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018751, intron 1 of 7)	L1_Mur3|LINE|L1	10533.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	6.86	2.76	3.7	1.35	3.27	0.0	3.17	0.88	2.5
Merged-chr16-28517967-3	chr16	28517483	28518483	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	46512.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	7.44	5.53	3.7	20.24	19.13	13.66	1.06	1.77	1.25
Merged-chr13-95494536-1	chr13	95494036	95495036	+	919.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15881.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.57	0.92	1.85	0.67	1.87	0.0	90.83	83.57	49.34
Merged-chr12-3283164-3	chr12	3282664	3283664	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	Charlie1a|DNA|hAT-Charlie	26805.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	104.11	123.03	96.2	64.77	87.24	75.56	148.92	146.36	86.81
Merged-chr2-147013907-2	chr2	147013403	147014403	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	904.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	147.59	229.01	182.22	135.62	162.34	163.17	121.46	169.35	93.05
Merged-chr16-87597721-3	chr16	87597226	87598226	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44396.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	8.58	5.53	11.1	6.75	9.33	4.82	5.28	7.96	3.75
Merged-chr11-115079231-2	chr11	115078727	115079727	+	919.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12204.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	92.1	71.42	41.62	22.27	21.46	17.68	21.12	16.8	7.49
Merged-chr14-62845236-3	chr14	62844741	62845741	+	918.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	7520.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	61.21	60.36	52.72	67.47	49.92	52.25	54.92	49.08	56.21
Merged-chr2-144217439-3	chr2	144216936	144217936	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28146.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	6.86	10.6	4.62	4.72	6.06	0.0	2.11	2.21	4.37
Merged-chr12-80057663-3	chr12	80057160	80058160	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55353.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	21.74	6.45	3.7	14.17	4.2	1.61	12.67	5.31	5.0
Merged-chr7-35585659-3	chr7	35585214	35586214	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145840)	promoter-TSS (NM_145840)	-132.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	9.72	8.29	5.55	10.12	10.26	16.88	11.62	0.88	8.74
Merged-chr4-137370606-3	chr4	137370161	137371161	+	918.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12902.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	89.24	69.12	72.15	96.48	59.25	80.38	114.07	107.89	61.83
Merged-chr11-70970751-4	chr11	70970201	70971201	+	918.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_075087)	promoter-TSS (NR_075087)	501.0	NM_001252415	69723.0	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	105.83	105.06	86.02	138.99	152.55	105.3	182.72	223.29	99.92
Merged-chr19-56689395-2	chr19	56688886	56689886	+	918.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32986.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	13.73	14.75	1.85	14.17	14.93	11.25	26.4	23.43	3.75
Merged-chr18-20815556-3	chr18	20815047	20816047	+	918.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69143.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	12.01	7.83	7.4	13.49	8.86	8.04	12.67	8.84	12.49
Merged-chr15-63497355-3	chr15	63496848	63497848	+	918.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17740.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	13.16	10.6	18.5	26.31	16.33	33.76	15.84	5.75	7.49
Merged-chr5-43855010-3	chr5	43854510	43855510	+	918.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13799.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	99.54	140.08	118.39	160.58	127.82	162.37	124.63	118.5	79.32
Merged-chr12-104315793-1	chr12	104315293	104316293	+	918.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101472, intron 1 of 3)	intron (NM_001101472, intron 1 of 3)	1223.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	3.43	2.3	5.55	10.8	3.73	4.82	3.17	1.33	1.25
Merged-chr18-58567988-3	chr18	58567498	58568498	+	918.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	Lx7|LINE|L1	11758.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	58.35	87.55	39.77	51.95	78.84	74.75	36.97	44.22	33.72
Merged-chr4-95157850-3	chr4	95157345	95158345	+	918.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105623.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.01	5.07	5.55	8.1	4.67	4.02	1.06	4.86	6.87
Merged-chr7-112217399-2	chr7	112216905	112217905	+	918.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-8431.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	7.44	11.98	5.55	14.84	5.6	6.43	2.11	2.21	2.5
Merged-chr6-129001567-3	chr6	129001055	129002055	+	918.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015455, intron 1 of 2)	B3|SINE|B2	8594.0	NR_015455	408064.0	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	30.89	36.86	8.32	35.09	18.19	5.63	11.62	8.84	7.49
Merged-chr11-117707031-3	chr11	117706520	117707520	+	918.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	MTC|LTR|ERVL-MaLR	52731.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	62.93	59.44	49.02	74.22	62.05	36.97	59.15	72.07	33.72
Merged-chr10-99203762-3	chr10	99203264	99204264	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59467.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	119.56	113.81	86.95	107.28	103.1	84.4	160.54	160.95	63.08
Merged-chr7-24441999-3	chr7	24441483	24442483	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199013, intron 1 of 2)	intron (NM_199013, intron 1 of 2)	3699.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	11.44	12.44	1.85	26.31	16.33	27.33	15.84	10.17	6.25
Merged-chr12-35553410-3	chr12	35552960	35553960	+	918.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18471.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	68.07	82.02	72.15	62.07	69.98	77.97	51.75	46.87	29.35
Merged-chr5-105499590-2	chr5	105499091	105500091	+	918.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-19880.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	13.16	14.28	6.47	11.47	13.53	16.88	3.17	2.21	3.75
Merged-chr8-71630758-4	chr8	71630288	71631288	+	918.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106035)	TTS (NR_106035)	318.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	217.38	186.16	138.74	290.8	183.34	187.28	279.89	351.08	97.43
Merged-chr2-30514980-3	chr2	30514472	30515472	+	918.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40773.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.0	2.3	7.4	3.37	2.33	0.0	7.39	3.54	8.12
Merged-chr16-37010564-3	chr16	37010040	37011040	+	918.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1246.0	NM_029977	77782.0	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	21.74	14.75	14.8	10.12	13.06	14.47	12.67	13.27	13.12
Merged-chr18-24467846-3	chr18	24467353	24468353	+	918.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3018.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	5.15	4.15	3.7	4.05	6.53	4.82	2.11	4.42	3.75
Merged-chr6-108759559-3	chr6	108759062	108760062	+	918.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23497.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.72	5.99	13.87	16.19	2.8	2.41	10.56	6.19	2.5
Merged-chr10-44599769-3	chr10	44599261	44600261	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141013.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	149.88	214.26	129.49	160.58	156.28	172.01	210.18	252.04	118.66
Merged-chr11-34783189-3	chr11	34782713	34783713	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	692.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	91.53	113.35	77.7	85.69	99.37	84.4	111.96	129.55	59.33
Merged-chr11-44526871-3	chr11	44526359	44527359	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	intron (NM_001166553, intron 2 of 5)	7482.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	30.32	29.49	19.42	36.43	25.19	12.06	107.73	94.18	42.47
Merged-chr2-92058636-3	chr2	92058128	92059128	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34458.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	11.44	6.91	3.7	15.52	5.6	3.22	8.45	7.07	9.37
Merged-chr19-40401386-3	chr19	40400893	40401893	+	918.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034962, intron 2 of 22)	MIR|SINE|MIR	917.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	3.43	8.29	1.85	6.07	9.8	6.43	4.22	3.54	6.87
Merged-chr4-101155245-3	chr4	101154739	101155739	+	918.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 22 of 24)	intron (NM_146145, intron 22 of 24)	86201.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	56.06	52.07	24.05	83.66	90.5	52.25	45.42	44.22	29.35
Merged-chr13-93007278-3	chr13	93006774	93007774	+	918.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-66030.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	11.44	9.68	2.77	6.07	5.13	8.04	67.6	71.19	19.36
Merged-chr11-71289692-2	chr11	71289190	71290190	+	918.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4458.0	NR_027858	627984.0	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c	NLR family, pyrin domain containing 1C, pseudogene	pseudo	23.45	37.78	12.95	0.0	0.93	0.0	30.63	20.34	33.72
Merged-chr4-148168523-3	chr4	148168021	148169021	+	918.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7853.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	2.29	1.84	3.7	3.37	4.67	3.22	6.34	0.88	2.5
Merged-chr15-90310512-3	chr15	90309998	90310998	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-43212.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	16.59	11.06	7.4	21.59	18.19	13.66	11.62	19.46	9.99
Merged-chr13-6632653-2	chr13	6632148	6633148	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16123.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	4.0	7.83	4.62	9.45	4.2	1.61	8.45	2.65	11.24
Merged-chr6-142508024-3	chr6	142507551	142508551	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-94.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	4.58	5.53	2.77	1.35	2.8	1.61	2.11	0.88	3.75
Merged-chr6-73240336-1	chr6	73239836	73240836	+	918.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-8169.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	3.43	5.07	0.0	1.35	1.4	0.0	22.18	19.01	11.24
Merged-chr5-97082233-3	chr5	97081751	97082751	+	918.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198422, exon 7 of 7)	3' UTR (NM_198422, exon 7 of 7)	29345.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	16.02	23.96	27.75	22.27	14.0	12.86	41.19	38.91	14.99
Merged-chr13-51101592-3	chr13	51101092	51102092	+	918.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	45.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	118.99	102.29	128.57	109.98	84.9	85.2	172.16	68.98	73.69
Merged-chr16-17125166-3	chr16	17124626	17125626	+	918.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358255)	promoter-TSS (NM_001358255)	76.0	NM_183287	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	6.29	3.69	4.62	6.75	3.27	4.82	4.22	1.77	1.25
Merged-chr13-39881293-2	chr13	39880794	39881794	+	918.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406717.0	NM_172143	218165.0	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	12.59	7.83	16.65	4.05	6.06	8.04	20.07	20.34	11.24
Merged-chr18-9556051-3	chr18	9555555	9556555	+	918.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63414.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	80.66	91.7	51.8	62.75	74.64	51.44	83.44	69.86	33.1
Merged-chrX-155184170-4	chrX	155183626	155184626	+	918.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32323.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	72.65	59.9	43.47	65.45	48.05	55.46	71.82	81.8	39.97
Merged-chr2-144188341-3	chr2	144187838	144188838	+	918.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136884, intron 1 of 3)	MIR|SINE|MIR	952.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	7.44	7.83	1.85	8.1	1.4	5.63	4.22	5.75	5.62
Merged-chr2-77280302-3	chr2	77279805	77280805	+	918.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	CpG	287.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	77.23	64.05	45.32	79.62	39.65	44.21	102.45	38.91	34.97
Merged-chr12-32764927-3	chr12	32764411	32765411	+	918.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55424.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	22.31	25.34	22.2	24.29	20.06	26.53	32.74	17.69	17.49
Merged-chr2-118547832-5	chr2	118547294	118548294	+	918.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311140)	promoter-TSS (NM_001311140)	-195.0	NM_001311140	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	14.87	17.51	7.4	26.31	10.26	9.65	36.97	27.86	17.49
Merged-chr10-24490668-2	chr10	24490164	24491164	+	918.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104778.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	4.58	8.75	8.32	8.1	4.67	3.22	14.79	11.5	21.23
Merged-chr6-89296558-3	chr6	89296069	89297069	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10844.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	56.06	33.18	32.37	60.05	55.05	42.6	43.3	38.03	27.48
Merged-chr7-107248830-1	chr7	107248330	107249330	+	918.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	39385.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	2.29	5.99	1.85	2.02	3.73	19.29	3.17	0.44	7.49
Merged-chr3-9001456-3	chr3	9000954	9001954	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2750.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	33.75	30.41	32.37	31.04	20.06	42.6	30.63	21.67	26.85
Merged-chr1-36754483-1	chr1	36753983	36754983	+	918.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040290, intron 8 of 8)	LTR33B|LTR|ERVL	-7315.0	NM_009539	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	12.01	4.61	7.4	5.4	4.67	1.61	6.34	4.86	11.24
Merged-chr4-129066022-3	chr4	129065527	129066527	+	918.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	7756.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	62.35	52.99	77.7	32.39	40.12	53.05	67.6	67.65	47.46
Merged-chr11-30198121-6	chr11	30197681	30198681	+	918.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009260)	promoter-TSS (NM_009260)	76.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	66.36	58.06	49.95	56.0	60.18	48.23	33.8	41.56	36.85
Merged-chr14-54653666-3	chr14	54653165	54654165	+	918.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085472)	promoter-TSS (NM_001085472)	20.0	NM_001242605	56215.0	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	28.03	29.03	33.3	31.04	25.19	35.37	40.14	28.3	44.34
Merged-chr17-34308320-3	chr17	34307848	34308848	+	918.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	2481.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	17.73	12.44	29.6	24.29	16.33	7.23	25.35	24.76	13.12
Merged-chr4-53127747-3	chr4	53127238	53128238	+	918.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 4 of 49)	intron (NM_013454, intron 4 of 49)	32157.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	89.24	86.63	66.6	82.99	69.04	93.24	73.93	73.4	64.95
Merged-chr1-171638893-3	chr1	171638379	171639379	+	918.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347184, intron 3 of 5)	intron (NM_001347184, intron 3 of 5)	3021.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	16.02	15.21	3.7	15.52	15.39	6.43	24.29	14.15	24.36
Merged-chr2-131085479-1	chr2	131084979	131085979	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011426, exon 2 of 21)	exon (NM_011426, exon 2 of 21)	1286.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	21.74	29.95	41.62	62.07	67.64	49.03	30.63	31.84	24.98
Merged-chrX-159738873-2	chrX	159738360	159739360	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	30259.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	23.45	15.21	5.55	25.64	20.99	20.09	43.3	35.82	23.11
Merged-chr13-100866395-4	chr13	100865778	100866778	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32851.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	29.75	17.97	1.85	71.52	46.65	20.09	57.03	43.33	21.86
Merged-chrX-71087632-4	chrX	71087149	71088149	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	RSINE1|SINE|B4	37393.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	49.2	39.63	27.75	31.71	20.99	36.97	41.19	34.05	44.34
Merged-chr5-117842026-1	chr5	117841526	117842526	+	918.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24813.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	2.29	3.23	1.85	4.72	0.93	3.22	2.11	1.77	1.25
Merged-chr17-90797852-2	chr17	90797335	90798335	+	918.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346957, intron 3 of 18)	intron (NM_001346957, intron 3 of 18)	-4359.0	NR_136930	102634634.0		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	4.0	9.22	10.17	8.1	7.0	12.06	2.11	0.88	2.5
Merged-chr5-146808697-3	chr5	146808063	146809063	+	918.238098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13607.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	108.12	144.23	123.02	106.61	129.22	162.37	137.3	158.3	66.82
Merged-chr5-107688005-3	chr5	107687516	107688516	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15464.0	NR_045871	654809.0	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0.57	2.76	5.55	5.4	2.33	3.22	7.39	3.1	7.49
Merged-chr18-35740513-3	chr18	35740019	35741019	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289592)	promoter-TSS (NM_001289592)	35.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	42.33	48.38	49.02	31.71	32.66	35.37	42.25	34.93	28.73
Merged-chr2-48975192-3	chr2	48974687	48975687	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-24953.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	6.86	7.83	7.4	15.52	12.13	4.82	6.34	10.61	3.75
Merged-chr10-67548191-3	chr10	67547731	67548731	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001005419, exon 1 of 1)	exon (NM_001005419, exon 1 of 1)	724.0	NM_001005419	211488.0	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	124.71	123.49	92.5	160.58	126.89	152.72	160.54	126.9	64.33
Merged-chr16-70394540-3	chr16	70394035	70395035	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 2 of 15)	intron (NM_028803, intron 2 of 15)	80586.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	7.44	5.07	19.42	12.14	12.13	9.65	16.9	22.11	27.48
Merged-chr14-70205107-3	chr14	70204590	70205590	+	918.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271408)	promoter-TSS (NM_001271408)	-467.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	13.16	9.68	3.7	43.18	46.65	20.09	15.84	10.61	2.5
Merged-chr17-53568349-3	chr17	53567809	53568809	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	1338.0	NR_151733	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	42.9	50.23	39.77	44.53	36.85	59.48	62.31	68.54	43.72
Merged-chr1-34564554-3	chr1	34564069	34565069	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3626.0	NM_009356	21756.0	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	10.87	7.37	11.1	4.72	8.4	9.65	9.51	3.98	6.87
Merged-chr1-153910602-3	chr1	153910110	153911110	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008131)	TTS (NM_008131)	10681.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	30.89	34.56	42.55	36.43	24.72	39.39	32.74	29.63	27.48
Merged-chr1-79671397-3	chr1	79670921	79671921	+	918.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	551.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	13.16	14.75	8.32	13.49	7.93	2.41	7.39	7.07	3.75
Merged-chr6-70864474-2	chr6	70863974	70864974	+	918.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	19959.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	16.02	17.97	3.7	13.49	14.46	16.08	10.56	10.17	12.49
Merged-chr2-165917396-3	chr2	165916867	165917867	+	918.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-32529.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	143.59	114.27	84.17	155.86	121.29	90.83	193.28	215.34	69.32
Merged-chr12-102721436-3	chr12	102721016	102722016	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-16647.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	94.39	57.6	33.3	58.03	66.24	82.79	65.48	48.2	44.97
Merged-chr7-125600756-3	chr7	125600246	125601246	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2683.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	118.99	83.86	61.05	72.87	40.59	64.3	95.06	90.2	51.84
Merged-chr15-57890571-3	chr15	57890098	57891098	+	918.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	L2a|LINE|L2	1820.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	43.48	58.06	41.62	42.51	27.06	43.4	54.92	50.85	46.84
Merged-chr2-70825092-4	chr2	70824620	70825620	+	918.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	CpG	360.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	228.25	188.46	197.94	311.04	188.47	208.98	253.48	177.31	139.89
Merged-chr1-12992431-4	chr1	12991988	12992988	+	918.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1353.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	5.72	2.3	1.85	4.72	0.93	4.82	4.22	2.65	3.75
Merged-chr18-31918730-3	chr18	31918189	31919189	+	918.0575560000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6786.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	31.46	36.86	22.2	22.94	19.59	19.29	28.52	19.01	26.85
Merged-chr7-28568444-3	chr7	28567925	28568925	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 2 of 9)	intron (NM_027470, intron 2 of 9)	-7441.0	NR_106016	102466795.0		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	4.58	3.23	1.85	6.07	2.33	6.43	3.17	2.65	7.49
Merged-chr12-112673118-3	chr12	112672602	112673602	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	1174.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	104.11	64.97	74.92	116.73	79.31	88.42	127.8	100.81	30.6
Merged-chr11-21239435-3	chr11	21238946	21239946	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	CpG	414.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	177.91	181.55	170.19	169.35	99.37	147.9	234.47	131.32	138.65
Merged-chr6-113857676-3	chr6	113857212	113858212	+	918.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	33827.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	40.04	29.49	28.67	34.41	21.93	37.78	68.65	46.43	33.72
Merged-chr14-31496290-2	chr14	31495796	31496796	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028932, intron 1 of 5)	intron (NM_028932, intron 1 of 5)	1217.0	NM_028932	74427.0	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	16.59	14.28	8.32	13.49	22.86	12.86	26.4	12.82	6.87
Merged-chr18-55517053-1	chr18	55516553	55517553	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-524462.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.15	6.45	1.85	4.72	5.6	4.02	2.11	2.21	2.5
Merged-chr2-18952238-2	chr2	18951742	18952742	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	45879.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	34.9	41.01	11.1	25.64	12.6	12.86	14.79	6.19	17.49
Merged-chr6-116440215-1	chr6	116439715	116440715	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	20963.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	26.31	19.81	21.27	27.66	23.33	31.35	15.84	15.48	11.24
Merged-chr1-176833414-1	chr1	176832914	176833914	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	MIRb|SINE|MIR	2719.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	105.83	133.17	57.35	89.74	112.43	81.18	132.02	175.54	102.42
Merged-chr14-117635842-1	chr14	117635342	117636342	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	B4|SINE|B4	318005.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.0	2.76	0.0	4.05	3.27	6.43	8.45	2.65	5.0
Merged-chr10-99461313-1	chr10	99460813	99461813	+	918.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147858.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	191.64	195.37	93.42	165.98	157.21	186.48	144.7	214.01	99.3
Merged-chr5-62846463-3	chr5	62845963	62846963	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	32640.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	136.72	164.96	135.97	155.19	102.63	103.69	89.78	104.79	54.96
Merged-chr8-81767553-1	chr8	81767053	81768053	+	918.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297593, intron 4 of 23)	intron (NM_001297593, intron 4 of 23)	424991.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	53.77	47.46	24.97	44.53	55.51	45.01	21.12	27.41	31.23
Merged-chr9-62857392-1	chr9	62856892	62857892	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001102468)	promoter-TSS (NM_001102468)	-712.0	NM_001102468	75600.0	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	15.45	21.66	29.6	31.04	10.73	34.56	34.85	10.17	29.98
Merged-chr8-84415765-1	chr8	84415265	84416265	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007578, exon 1 of 47)	exon (NM_007578, exon 1 of 47)	401.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	143.01	105.98	126.72	177.45	66.24	83.59	2.11	0.0	3.12
Merged-chr2-73463868-5	chr2	73463372	73464372	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9983.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	78.94	71.42	79.55	89.74	61.11	49.03	92.94	80.03	38.72
Merged-chr4-137609432-1	chr4	137608932	137609932	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	intron (NM_001355588, intron 6 of 26)	15260.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	24.6	29.03	52.72	33.06	18.66	53.85	33.8	19.9	42.47
Merged-chr2-83711113-1	chr2	83710613	83711613	+	918.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-13284.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	3.43	9.22	3.7	10.12	11.66	12.06	4.22	2.65	4.37
Merged-chr13-36740140-2	chr13	36739648	36740648	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-5671.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	9.15	5.53	1.85	3.37	9.8	6.43	6.34	1.77	6.87
Merged-chr17-15706166-3	chr17	15705667	15706667	+	918.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 1 of 35)	intron (NM_007690, intron 1 of 35)	1200.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	195.64	211.04	149.84	156.53	160.95	162.37	162.65	195.0	147.39
Merged-chr16-32060040-3	chr16	32059541	32060541	+	917.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177326, intron 1 of 14)	intron (NM_177326, intron 1 of 14)	19301.0	NM_177326	224105.0	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 (RAC1) activated kinase 2	protein-coding	38.33	46.08	40.7	45.88	34.99	37.78	27.46	23.43	26.85
Merged-chr6-65590317-3	chr6	65589812	65590812	+	917.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001495)	promoter-TSS (NM_001001495)	-86.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	6.29	5.53	9.25	6.75	4.2	10.45	7.39	3.54	7.49
Merged-chr3-28746318-3	chr3	28745814	28746814	+	917.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34963.0	NM_177586	208691.0	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	5.15	2.76	0.0	6.07	3.27	4.82	1.06	0.88	1.25
Merged-chr11-19926742-3	chr11	19926261	19927261	+	917.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	2319.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	138.44	144.23	80.47	89.74	73.71	87.61	61.26	51.29	40.59
Merged-chr15-96568499-3	chr15	96567978	96568978	+	917.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR37-int|LTR|ERV1	73484.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	37.18	32.72	30.52	46.56	37.79	26.53	29.57	35.37	39.35
Merged-chr5-139456833-3	chr5	139456301	139457301	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 1 of 4)	PB1D7|SINE|Alu	3733.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	72.65	75.57	49.02	126.17	125.49	57.87	90.83	100.37	45.59
Merged-chr2-57191039-3	chr2	57190543	57191543	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	9212.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	3.43	2.3	9.25	5.4	3.73	7.23	3.17	1.33	2.5
Merged-chr8-120618260-3	chr8	120617727	120618727	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	16155.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	20.59	17.51	1.85	23.62	11.2	13.66	11.62	15.48	8.74
Merged-chr4-62265623-3	chr4	62265119	62266119	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20810.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	17.73	17.51	16.65	17.54	16.33	6.43	30.63	25.65	13.74
Merged-chr11-43569857-3	chr11	43569363	43570363	+	917.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	31699.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	8.58	6.45	4.62	12.82	6.53	8.04	6.34	6.63	6.25
Merged-chr14-121416910-3	chr14	121416415	121417415	+	917.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37685.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	5.72	2.76	1.85	15.52	4.2	4.02	11.62	10.17	3.12
Merged-chr3-105018992-3	chr3	105018500	105019500	+	917.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33953.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	113.27	108.28	83.25	133.59	106.36	78.77	115.12	133.53	58.71
Merged-chrX-163761362-3	chrX	163760860	163761860	+	917.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028842)	promoter-TSS (NM_028842)	-28.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	9.72	10.14	0.0	16.87	7.0	8.04	7.39	11.5	6.25
Merged-chr7-142363262-2	chr7	142362771	142363771	+	917.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	8988.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	8.58	2.76	5.55	1.35	0.47	3.22	8.45	6.19	6.25
Merged-chr19-53453362-2	chr19	53452858	53453858	+	917.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	11438.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	46.91	27.65	19.42	61.4	57.85	49.83	8.45	5.31	0.0
Merged-chr13-67269747-1	chr13	67269247	67270247	+	917.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155551)	promoter-TSS (NR_155551)	-679.0	NM_001001152	238690.0	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Gm33446|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	13.73	23.5	12.02	14.17	27.52	13.66	36.97	47.31	32.48
Merged-chr19-6974477-3	chr19	6973972	6974972	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-576.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	22.31	17.97	37.0	22.94	25.19	39.39	12.67	13.27	25.61
Merged-chr11-53707276-3	chr11	53706719	53707719	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009012)	promoter-TSS (NM_009012)	100.0	NM_009012	19360.0	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	79.52	99.99	60.12	92.44	130.16	100.47	125.69	126.02	54.96
Merged-chr11-114853268-3	chr11	114852777	114853777	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	intron (NM_147217, intron 1 of 3)	1247.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	19.45	19.35	23.12	32.39	16.79	35.37	29.57	27.86	11.24
Merged-chr1-131703673-2	chr1	131703169	131704169	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	14974.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	12.01	8.29	9.25	4.05	0.47	1.61	11.62	15.03	14.99
Merged-chr6-135169392-2	chr6	135168867	135169867	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1152.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	33.75	29.49	24.05	8.1	9.33	16.08	3.17	2.65	3.75
Merged-chr9-107247698-2	chr9	107247192	107248192	+	917.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15783.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	2.86	4.15	1.85	4.05	1.4	2.41	1.06	2.65	2.5
Merged-chr8-108612153-3	chr8	108611648	108612648	+	917.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27471.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	29.75	18.43	24.05	20.24	22.39	16.08	15.84	15.03	11.24
Merged-chr10-44665861-3	chr10	44665345	44666345	+	917.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207097.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	81.8	62.21	40.7	76.24	58.31	45.01	72.88	54.39	44.34
Merged-chr12-85379447-3	chr12	85378943	85379943	+	917.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-4726.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	94.39	94.92	94.35	81.64	71.38	90.02	72.88	70.3	69.95
Merged-chr13-9249872-3	chr13	9249366	9250366	+	917.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26659.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	22.88	27.19	56.42	30.36	18.19	34.56	26.4	38.91	21.86
Merged-chr6-143293854-2	chr6	143293359	143294359	+	917.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027803, intron 3 of 3)	intron (NR_027803, intron 3 of 3)	47971.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	8.58	10.14	11.1	8.77	8.4	4.82	12.67	15.03	9.37
Merged-chr1-88611479-1	chr1	88610979	88611979	+	917.75	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	59962.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	59.49	60.36	32.37	2.02	1.4	3.22	1.06	0.44	4.37
Merged-chr2-128716165-3	chr2	128715667	128716667	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	17252.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	105.83	74.65	67.52	91.76	66.71	81.18	107.73	107.89	54.96
Merged-chr6-115717832-3	chr6	115717291	115718291	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41156.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	90.96	87.55	19.42	70.17	48.98	26.53	50.7	42.45	23.11
Merged-chr12-100831206-3	chr12	100830694	100831694	+	917.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361023, intron 2 of 11)	intron (NM_001361023, intron 2 of 11)	52137.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	1.14	6.45	3.7	3.37	3.73	3.22	5.28	4.42	5.0
Merged-chr2-76367415-3	chr2	76366915	76367915	+	917.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2569.0	NM_153405	241490.0	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	4.0	7.37	2.77	8.1	3.27	3.22	11.62	2.21	5.0
Merged-chr3-55549637-1	chr3	55549137	55550137	+	917.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87909.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	4.58	4.15	1.85	5.4	3.73	6.43	4.22	3.54	1.25
Merged-chr10-58408161-3	chr10	58407684	58408684	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359116, intron 3 of 9)	intron (NM_001359116, intron 3 of 9)	13811.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	50.91	34.1	44.4	25.64	21.93	38.58	59.15	45.54	50.59
Merged-chr9-108002027-3	chr9	108001524	108002524	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013785)	promoter-TSS (NM_013785)	-624.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	291.75	292.6	158.17	312.39	287.37	180.05	258.77	313.5	117.41
Merged-chr15-80219421-3	chr15	80218912	80219912	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14668.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	41.76	34.1	15.72	71.52	76.51	83.59	67.6	76.49	33.1
Merged-chr4-119178489-3	chr4	119177953	119178953	+	917.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013848, exon 13 of 13)	exon (NM_013848, exon 13 of 13)	-4258.0	NM_001145936	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	46.34	29.03	16.65	6.07	1.4	3.22	46.47	47.31	25.61
Merged-chr13-64306297-2	chr13	64305786	64306786	+	917.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	intron (NM_025370, intron 4 of 5)	6424.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	8.58	5.99	6.47	14.17	6.06	4.02	5.28	6.63	2.5
Merged-chr9-78395829-3	chr9	78395355	78396355	+	917.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001191044)	promoter-TSS (NM_001191044)	78.0	NM_001191044	100048658.0	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	2.86	3.69	7.4	9.45	5.13	6.43	5.28	4.42	3.12
Merged-chr5-52674922-3	chr5	52674412	52675412	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-5211.0	NM_172490	211006.0	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	4.0	8.29	9.25	4.72	7.46	3.22	12.67	3.54	6.25
Merged-chr2-12934126-3	chr2	12933639	12934639	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008961, intron 1 of 4)	intron (NM_008961, intron 1 of 4)	10098.0	NM_001305437	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	3.43	8.29	3.7	6.75	7.93	5.63	6.34	3.98	0.62
Merged-chr16-91726475-3	chr16	91726034	91727034	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	intron (NM_026994, intron 1 of 11)	2268.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	73.22	71.88	36.07	82.99	78.37	70.73	73.93	116.29	51.84
Merged-chr1-80630477-3	chr1	80629960	80630960	+	917.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	34892.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	22.88	21.2	7.4	19.57	25.19	12.06	14.79	19.46	28.73
Merged-chr10-18423716-3	chr10	18423228	18424228	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	16053.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	9.15	10.6	12.95	11.47	9.33	3.22	7.39	3.98	5.0
Merged-chr3-8594856-3	chr3	8594355	8595355	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33196.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	14.87	13.36	2.77	17.54	7.46	9.65	11.62	5.75	5.0
Merged-chr14-30152293-3	chr14	30151774	30152774	+	917.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 8 of 46)	intron (NM_001083616, intron 8 of 46)	129641.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	4.0	3.69	0.0	11.47	4.2	4.82	9.51	5.31	1.87
Merged-chr2-102917640-3	chr2	102917145	102918145	+	917.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15980.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	16.02	7.83	5.55	14.84	7.0	26.53	7.39	7.07	17.49
Merged-chr8-36159132-4	chr8	36158695	36159695	+	917.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	3185.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	23.45	25.34	25.9	22.94	24.26	28.94	8.45	6.19	6.25
Merged-chr19-40999079-3	chr19	40998566	40999566	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4531.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	41.19	32.25	24.05	47.23	59.25	49.83	42.25	26.53	10.62
Merged-chr11-94704106-3	chr11	94703605	94704605	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001007584, exon 1 of 2)	exon (NM_001007584, exon 1 of 2)	394.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	20.02	8.29	7.4	19.57	6.06	15.27	11.62	11.05	7.49
Merged-chr16-75869487-3	chr16	75868991	75869991	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 7 of 7)	intron (NM_023380, intron 7 of 7)	39775.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	44.05	54.37	35.15	41.16	23.33	26.53	40.14	40.68	29.98
Merged-chr9-50552395-3	chr9	50551896	50552896	+	917.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133217, intron 1 of 11)	intron (NM_133217, intron 1 of 11)	1266.0	NM_001359610	170752.0	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	62.35	52.99	40.7	53.98	51.78	66.71	70.76	71.63	65.58
Merged-chr15-25835089-3	chr15	25834589	25835589	+	917.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8209.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	14.87	12.44	3.7	21.59	11.66	12.86	20.07	3.54	9.99
Merged-chr2-163645761-5	chr2	163645272	163646272	+	917.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012032)	promoter-TSS (NM_012032)	-629.0	NM_012032	26943.0	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	199.07	208.27	186.84	222.66	148.82	183.26	179.55	259.55	118.04
Merged-chr10-25434563-3	chr10	25434062	25435062	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	26194.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	30.89	23.5	14.8	13.49	17.73	14.47	12.67	17.69	11.87
Merged-chr11-20740618-2	chr11	20740106	20741106	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	950.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	220.24	260.34	249.74	190.27	212.26	172.81	256.65	271.93	160.5
Merged-chr13-86018714-1	chr13	86018214	86019214	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28081.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	4.0	2.76	0.0	14.17	8.86	12.06	5.28	7.96	2.5
Merged-chr4-101069066-3	chr4	101068609	101069609	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183024)	promoter-TSS (NM_183024)	71.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	18.31	19.35	5.55	18.89	10.73	20.9	5.28	7.52	5.0
Merged-chr8-4521679-3	chr8	4521201	4522201	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 9 of 10)	intron (NM_026058, intron 9 of 10)	28296.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	16.59	16.59	12.95	10.12	17.26	24.11	11.62	18.13	22.48
Merged-chr2-167747644-3	chr2	167747144	167748144	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56467.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	20.02	15.67	8.32	22.94	16.79	28.13	42.25	15.48	16.24
Merged-chr3-16021312-1	chr3	16020812	16021812	+	917.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D5|LTR|ERVK	-14980.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	6.29	7.83	5.55	10.12	5.13	6.43	6.34	4.86	9.99
Merged-chr2-80081495-5	chr2	80080960	80081960	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	MER31A|LTR|ERV1	-42558.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	69.22	104.6	52.72	92.44	111.96	57.87	117.24	128.23	72.45
Merged-chr10-81450314-3	chr10	81449828	81450828	+	917.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22803.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	9.72	6.91	0.0	2.7	1.87	3.22	7.39	4.42	8.74
Merged-chr6-31285406-3	chr6	31284889	31285889	+	917.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	L2c|LINE|L2	65038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	24.6	37.32	30.52	43.18	56.45	39.39	30.63	30.95	31.85
Merged-chr7-44866470-3	chr7	44865952	44866952	+	917.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133949, intron 5 of 11)	intron (NM_133949, intron 5 of 11)	3336.0	NM_133949	84113.0	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	28.03	14.75	30.52	30.36	13.53	19.29	30.63	19.01	8.74
Merged-chr1-36612742-3	chr1	36612297	36613297	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19465.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	179.62	209.66	98.05	55.33	57.38	50.64	57.03	50.41	47.46
Merged-chr3-95135157-3	chr3	95134674	95135674	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1086.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	36.61	35.94	42.55	21.59	19.59	62.7	55.98	63.23	49.96
Merged-chr6-50455921-3	chr6	50455462	50456462	+	917.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347213, exon 1 of 24)	5' UTR (NM_001347213, exon 1 of 24)	208.0	NM_001163645	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	5.15	2.3	0.0	2.7	4.2	1.61	3.17	3.98	5.0
Merged-chr4-124695983-2	chr4	124695486	124696486	+	917.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2432.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	2.86	1.38	5.55	35.76	27.52	25.72	9.51	9.73	8.74
Merged-chr14-52451310-2	chr14	52450807	52451807	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_020514)	TTS (NM_020514)	914.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	10.87	4.15	5.55	8.77	17.26	19.29	2.11	3.54	2.5
Merged-chr11-3139153-2	chr11	3138652	3139652	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MTA_Mm|LTR|ERVL-MaLR	15131.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	31.46	47.46	86.95	40.48	75.57	122.18	4.22	7.96	133.65
Merged-chr11-3154995-2	chr11	3154433	3155433	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 13 of 32)	ID4|SINE|ID	30912.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	29.75	86.17	64.75	76.92	74.17	90.83	5.28	1.33	134.27
Merged-chr2-73039481-3	chr2	73038981	73039981	+	917.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59035.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	19.45	19.81	11.1	43.18	22.86	51.44	63.37	47.31	31.23
Merged-chr19-34747039-3	chr19	34746514	34747514	+	917.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172838)	promoter-TSS (NM_172838)	97.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	18.88	4.15	3.7	10.8	2.8	3.22	4.22	1.33	5.0
Merged-chr7-126721826-3	chr7	126721260	126722260	+	917.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-16944.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	12.01	10.14	9.25	9.45	7.0	15.27	7.39	11.94	7.49
Merged-chr16-30465030-2	chr16	30464544	30465544	+	917.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-76514.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	17.16	14.75	13.87	21.59	14.0	20.9	54.92	70.3	22.48
Merged-chr11-116681190-3	chr11	116680693	116681693	+	917.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009180, intron 6 of 8)	intron (NM_009180, intron 6 of 8)	6596.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	156.74	109.21	95.27	122.12	75.11	92.44	99.28	118.94	43.09
Merged-chr11-29147645-2	chr11	29147151	29148151	+	917.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 17 of 27)	intron (NM_027869, intron 17 of 27)	16900.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	3.43	4.15	2.77	39.13	25.66	27.33	151.03	128.23	89.31
Merged-chr12-100083860-2	chr12	100083303	100084303	+	917.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28528.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	74.37	58.06	24.97	145.74	59.25	79.58	155.26	117.17	68.7
Merged-chr4-136888465-1	chr4	136887965	136888965	+	917.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	41.76	54.83	69.37	49.93	45.25	87.61	135.19	146.36	86.81
Merged-chr4-8793446-3	chr4	8792942	8793942	+	917.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 2 of 36)	L1MA4|LINE|L1	42118.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.0	4.61	9.25	4.05	4.2	4.82	5.28	8.84	1.25
Merged-chr3-94814847-1	chr3	94814347	94815347	+	917.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22720.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	20.59	26.26	9.25	27.66	20.53	28.13	10.56	10.61	13.12
Merged-chr6-100214766-3	chr6	100214266	100215266	+	917.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	72592.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	13.73	5.53	3.7	10.8	2.33	1.61	9.51	3.54	1.87
Merged-chr12-25054728-1	chr12	25054228	25055228	+	917.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 31 of 31)	intron (NM_001081378, intron 31 of 31)	41364.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	2.29	4.15	5.55	5.4	0.0	4.82	9.51	15.92	7.49
Merged-chr17-35425276-1	chr17	35424776	35425776	+	917.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023124, exon 2 of 5)	exon (NM_023124, exon 2 of 5)	399.0	NM_207648	110557.0	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	114.98	72.8	27.75	73.54	36.39	15.27	99.28	70.75	18.74
Merged-chr2-70704565-3	chr2	70704055	70705055	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43046.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	2.29	2.3	0.0	3.37	1.4	0.0	2.11	0.0	0.62
Merged-chr9-59725734-3	chr9	59725235	59726235	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17971.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	79.52	75.11	71.22	54.65	66.24	40.99	73.93	57.92	48.71
Merged-chr11-110997441-3	chr11	110996964	110997964	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252209)	promoter-TSS (NM_001252209)	-23.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	70.36	82.48	69.37	124.15	91.44	103.69	88.72	63.23	58.71
Merged-chr17-56674251-3	chr17	56673741	56674741	+	917.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252467, intron 1 of 13)	URR1B|DNA|hAT-Charlie	1016.0	NM_027933	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	65.79	76.49	37.92	72.87	51.32	60.28	87.66	76.94	33.72
Merged-chr3-41245095-3	chr3	41244580	41245580	+	917.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162034.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	29.75	29.49	17.57	68.15	55.51	38.58	11.62	9.29	9.99
Merged-chr6-137302755-3	chr6	137302257	137303257	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 1 of 26)	intron (NM_011216, intron 1 of 26)	50458.0	NM_001164401	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	10.3	1.84	7.4	6.75	1.87	2.41	3.17	6.19	2.5
Merged-chr17-34117319-4	chr17	34116884	34117884	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	B1_Mus1|SINE|Alu	2516.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	47.48	44.24	26.82	24.96	16.33	42.6	44.36	55.71	34.97
Merged-chr18-12131491-3	chr18	12130993	12131993	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	2643.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	33.18	37.32	34.22	31.04	25.19	25.72	42.25	41.12	28.1
Merged-chr18-44608184-2	chr18	44607681	44608681	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53484.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	22.31	11.52	14.8	14.17	10.26	20.09	3.17	0.0	5.0
Merged-chr10-41476417-3	chr10	41475917	41476917	+	917.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164433, exon 1 of 23)	5' UTR (NM_001164433, exon 1 of 23)	103.0	NM_138315	171580.0	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	60.64	38.71	18.5	56.0	44.32	39.39	33.8	38.91	38.1
Merged-chr14-25759852-3	chr14	25759333	25760333	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	9023.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	22.88	28.57	31.45	40.48	13.53	31.35	22.18	17.24	22.48
Merged-chr10-82812029-3	chr10	82811516	82812516	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038042)	promoter-TSS (NR_038042)	-107.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	13.73	1.84	0.0	12.14	9.8	9.65	15.84	8.84	5.62
Merged-chr17-23548838-3	chr17	23548322	23549322	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Arg-AGG|tRNA|tRNA	-1977.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	16.02	24.88	20.35	11.47	8.86	20.09	15.84	10.17	8.74
Merged-chr13-107168854-3	chr13	107168355	107169355	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146285.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	10.3	10.14	26.82	8.1	13.53	4.82	6.34	4.42	5.0
Merged-chr17-47767299-3	chr17	47766805	47767805	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18439.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	102.97	127.64	74.0	161.26	166.54	163.97	190.11	169.79	95.55
Merged-chr1-84946198-3	chr1	84945690	84946690	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11107.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	18.88	8.29	9.25	11.47	12.13	12.86	9.51	6.19	15.61
Merged-chr7-101311318-3	chr7	101310872	101311872	+	917.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-5714.0	NM_001360460	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	62.35	59.9	29.6	65.45	48.05	40.19	63.37	92.41	39.35
Merged-chr13-89339994-3	chr13	89339490	89340490	+	917.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200646.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	9.72	7.37	9.25	10.8	8.4	8.84	28.52	26.09	16.24
Merged-chr12-84615298-3	chr12	84614790	84615790	+	917.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 2 of 18)	intron (NM_008992, intron 2 of 18)	2176.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	54.35	47.92	49.02	97.16	116.63	121.37	77.1	100.37	28.73
Merged-chr7-122459766-3	chr7	122459266	122460266	+	917.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	intron (NM_001316672, intron 5 of 16)	170641.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	11.44	6.45	7.4	26.99	39.65	26.53	45.42	28.74	28.73
Merged-chr6-32588487-2	chr6	32587990	32588990	+	917.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175750)	promoter-TSS (NM_175750)	-298.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	28.03	8.75	11.1	30.36	8.86	12.86	15.84	5.31	9.37
Merged-chr11-62810568-3	chr11	62810064	62811064	+	917.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9689.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	14.3	14.75	18.5	14.84	14.0	16.08	15.84	13.27	14.99
Merged-chr8-80738473-3	chr8	80737998	80738998	+	917.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053124, intron 1 of 23)	CpG	961.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	100.68	134.09	162.79	97.16	109.16	90.02	132.02	117.17	94.93
Merged-chr12-72084402-3	chr12	72083888	72084888	+	917.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026038, intron 1 of 4)	intron (NM_026038, intron 1 of 4)	925.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	29.17	19.81	11.1	30.36	22.39	32.15	32.74	32.28	13.12
Merged-chr11-55039792-3	chr11	55039280	55040280	+	917.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6309.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	15.45	6.91	1.85	8.1	1.87	1.61	4.22	1.77	1.25
Merged-chr11-83440672-5	chr11	83440183	83441183	+	917.1066890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172797)	TTS (NM_172797)	2989.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	7.44	3.23	3.7	13.49	16.33	4.82	12.67	5.31	6.25
Merged-chr6-50291880-3	chr6	50291395	50292395	+	917.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30126.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.0	0.92	1.85	4.05	2.8	4.82	1.06	1.33	2.5
Merged-chr6-38676888-3	chr6	38676388	38677388	+	917.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101507, exon 3 of 5)	exon (NM_001101507, exon 3 of 5)	13819.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	4.0	5.99	3.7	6.75	8.86	3.22	1.06	0.88	4.37
Merged-chr9-48161982-3	chr9	48161483	48162483	+	917.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	178915.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	4.58	10.14	10.17	6.07	13.53	12.86	4.22	3.98	5.0
Merged-chr15-40023374-1	chr15	40022874	40023874	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21814.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	2.29	3.69	5.55	3.37	5.6	6.43	2.11	4.42	3.75
Merged-chr3-15960939-1	chr3	15960439	15961439	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	45393.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	37.76	42.85	35.15	41.83	38.25	49.83	7.39	8.4	7.49
Merged-chr18-65704173-3	chr18	65703674	65704674	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 1 of 14)	intron (NM_177028, intron 1 of 14)	5906.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	62.93	64.97	72.15	48.58	60.18	74.75	51.75	37.14	24.98
Merged-chr1-180983250-3	chr1	180982747	180983747	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR22_Mus|LTR|ERVK	34322.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	12.59	13.82	5.55	9.45	11.2	12.86	22.18	25.2	7.49
Merged-chr1-165653785-1	chr1	165653285	165654285	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 5 of 5)	MLT1C|LTR|ERVL-MaLR	-19244.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	3.43	8.75	14.8	9.45	10.26	24.92	7.39	4.86	12.49
Merged-chr18-65190765-1	chr18	65190265	65191265	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-58096.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	2.29	2.76	9.25	0.67	1.4	3.22	12.67	4.42	8.74
Merged-chr5-123568324-1	chr5	123567824	123568824	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359513, intron 4 of 11)	intron (NM_001359513, intron 4 of 11)	4691.0	NM_001359513	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	1.72	0.92	0.0	2.02	2.8	0.0	15.84	8.84	3.12
Merged-chr6-54620453-1	chr6	54619953	54620953	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001335, intron 6 of 13)	intron (NM_001001335, intron 6 of 13)	17306.0	NM_001001335	231999.0	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	6.86	6.91	14.8	12.14	8.86	6.43	2.11	7.07	2.5
Merged-chr4-72169298-1	chr4	72168798	72169798	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285530, intron 5 of 17)	intron (NM_001285530, intron 5 of 17)	31595.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.86	4.61	3.7	8.77	8.4	22.51	9.51	17.69	10.62
Merged-chr3-40522940-3	chr3	40522421	40523421	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040445)	promoter-TSS (NR_040445)	-9.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	20.59	18.43	18.5	36.43	27.52	14.47	57.03	46.87	14.99
Merged-chrUn_JH584304-16332-1	chrUn_JH584304	15832	16832	+	917.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	43357.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	52.81	19.01	0.0
Merged-chr4-32011332-1	chr4	32010832	32011832	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009316, intron 14 of 16)	L1MA5A|LINE|L1	47225.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	15.45	16.59	7.4	24.96	25.19	24.92	25.35	11.5	21.23
Merged-chr11-3133043-3	chr11	3132435	3133435	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_003517)	TTS (NR_003517)	8914.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	43.48	46.54	82.32	83.66	98.9	165.58	4.22	3.54	141.77
Merged-chr6-40503396-1	chr6	40502896	40503896	+	917.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9804.0	NM_020502	57253.0	Mm.377132	NM_020502	ENSMUSG00000037140	Tas2r108	T2R108|T2r8|Tas2r4|Tas2r8|mGR08|mt2r8	taste receptor, type 2, member 108	protein-coding	2.29	1.84	7.4	4.72	4.67	6.43	3.17	2.65	7.49
Merged-chr4-117536018-3	chr4	117535512	117536512	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14312.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	2.86	5.99	3.7	9.45	2.8	6.43	11.62	5.31	0.0
Merged-chr2-69898229-5	chr2	69897613	69898613	+	917.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	867.0	NM_177783	68795.0	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	106.4	76.49	124.87	91.09	88.17	117.35	88.72	57.92	68.07
Merged-chr18-54992620-3	chr18	54992124	54993124	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360787)	promoter-TSS (NM_001360787)	-33.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	74.37	107.82	44.4	88.39	67.18	52.25	77.1	76.49	46.84
Merged-chr10-39378188-3	chr10	39377706	39378706	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	8407.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	22.88	16.13	33.3	33.74	19.59	14.47	26.4	19.9	11.87
Merged-chr14-64941693-3	chr14	64941189	64942189	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	8168.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	40.04	35.02	24.05	24.96	19.59	40.19	27.46	15.92	22.48
Merged-chr5-88596235-3	chr5	88595728	88596728	+	916.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 2 of 13)	MTD|LTR|ERVL-MaLR	12715.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	126.42	129.48	110.99	131.57	95.17	106.9	137.3	111.87	86.81
Merged-chr11-6561077-3	chr11	6560572	6561572	+	916.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190344, intron 1 of 9)	intron (NM_001190344, intron 1 of 9)	889.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	46.34	59.44	47.17	60.72	43.39	81.18	49.64	65.0	52.46
Merged-chr11-97826689-3	chr11	97826212	97827212	+	916.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 4 of 6)	intron (NM_010688, intron 4 of 6)	-14068.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	24.03	11.52	4.62	36.43	18.66	7.23	27.46	12.38	18.74
Merged-chr1-63567233-3	chr1	63566738	63567738	+	916.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011780, intron 21 of 25)	intron (NM_011780, intron 21 of 25)	119689.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	3.43	5.07	0.0	3.37	7.93	4.82	2.11	3.54	6.25
Merged-chr12-40040329-3	chr12	40039822	40040822	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2335.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	9.15	3.69	3.7	3.37	2.33	0.0	3.17	0.88	5.0
Merged-chr17-50490285-3	chr17	50489792	50490792	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19255.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	65.79	37.78	20.35	52.63	37.32	43.4	70.76	38.91	28.1
Merged-chr3-137853469-3	chr3	137852973	137853973	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-11014.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	48.62	24.42	34.22	48.58	19.13	28.94	41.19	59.69	32.48
Merged-chr5-67827137-3	chr5	67826644	67827644	+	916.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	L3|LINE|CR1	20287.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	46.91	36.4	37.0	47.9	25.19	40.19	49.64	29.18	25.61
Merged-chr16-10969630-3	chr16	10969121	10970121	+	916.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	23500.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	32.04	37.78	21.27	33.06	26.12	34.56	38.02	37.58	21.86
Merged-chr5-43880405-2	chr5	43879909	43880909	+	916.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	L1MC5a|LINE|L1	11600.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	156.17	138.24	134.12	202.42	126.89	190.5	172.16	223.29	118.04
Merged-chr6-129421447-3	chr6	129420924	129421924	+	916.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205363, intron 6 of 6)	MTC|LTR|ERVL-MaLR	12562.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	37.18	35.02	36.07	50.6	34.06	32.15	33.8	27.86	36.85
Merged-chr19-34725558-1	chr19	34725058	34726058	+	916.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	21553.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	21.17	17.05	18.5	22.94	24.72	35.37	19.01	13.27	13.12
Merged-chr11-50321491-3	chr11	50320991	50321991	+	916.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110500, intron 1 of 14)	intron (NM_001110500, intron 1 of 14)	4182.0	NM_001110499	12330.0	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	46.91	59.9	16.65	41.83	52.72	26.53	52.81	54.39	36.85
Merged-chr8-11005889-1	chr8	11005389	11006389	+	916.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1961.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	5.15	1.38	0.0	2.02	1.4	1.61	1.06	1.33	2.5
Merged-chr8-91051238-3	chr8	91050740	91051740	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18817.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	18.31	35.94	28.67	23.62	17.26	32.96	25.35	20.78	27.48
Merged-chr1-171270327-3	chr1	171269824	171270824	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020579)	promoter-TSS (NM_020579)	-4.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	140.73	116.58	78.62	134.27	116.16	73.95	86.61	88.88	64.95
Merged-chr12-33316630-3	chr12	33316120	33317120	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	14105.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	29.17	33.64	31.45	44.53	38.25	37.78	44.36	45.54	43.72
Merged-chr16-49783551-3	chr16	49783078	49784078	+	916.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72076.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.58	5.99	0.0	10.8	10.73	3.22	13.73	9.29	3.75
Merged-chr2-84820091-2	chr2	84819597	84820597	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024230, intron 1 of 7)	intron (NM_024230, intron 1 of 7)	2555.0	NM_024230	68678.0	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	5.15	2.3	1.85	7.42	3.73	4.82	0.0	1.77	2.5
Merged-chr10-19047583-3	chr10	19047094	19048094	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32184.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	16.59	9.68	20.35	15.52	11.2	6.43	11.62	6.63	7.49
Merged-chr8-119422172-2	chr8	119421664	119422664	+	916.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14998.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	8.01	6.91	1.85	8.1	4.2	21.7	5.28	4.86	3.75
Merged-chr7-58658185-3	chr7	58657677	58658677	+	916.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009728)	promoter-TSS (NM_009728)	-25.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.72	3.69	10.17	7.42	4.2	3.22	3.17	0.88	0.0
Merged-chr18-36320180-3	chr18	36319694	36320694	+	916.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	20093.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	9.15	1.84	5.55	5.4	1.4	13.66	11.62	1.33	0.0
Merged-chr10-117893352-3	chr10	117892846	117893846	+	916.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32113.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	40.62	33.18	24.05	45.21	30.32	55.46	44.36	36.26	38.1
Merged-chr7-89412317-1	chr7	89411817	89412817	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7951.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	14.87	11.98	9.25	23.62	21.46	24.11	1.06	0.44	1.25
Merged-chr3-109025757-3	chr3	109025256	109026256	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	1851.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	22.88	7.83	5.55	18.22	12.13	11.25	24.29	21.22	9.99
Merged-chr1-160861375-1	chr1	160860875	160861875	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45036.0	NM_001024952	381305.0	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	1.14	8.75	4.62	8.1	4.67	4.82	10.56	3.54	2.5
Merged-chr15-95826099-3	chr15	95825584	95826584	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3988.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	181.34	158.51	121.17	124.82	92.37	72.34	191.17	177.75	71.82
Merged-chr3-108132710-3	chr3	108132189	108133189	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	13463.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	18.31	8.75	20.35	18.89	16.79	22.51	24.29	9.29	8.12
Merged-chr10-39370200-1	chr10	39369700	39370700	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	CpG	401.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	65.79	27.19	38.85	106.61	39.65	57.87	62.31	29.63	12.49
Merged-chr18-23887500-1	chr18	23887000	23888000	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	L2c|LINE|L2	-67188.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	17.16	10.6	5.55	112.0	71.38	76.36	16.9	21.67	16.24
Merged-chrX-162643613-3	chrX	162643135	162644135	+	916.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290633)	promoter-TSS (NM_001290633)	23.0	NM_001359103	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	4.58	0.92	1.85	8.77	6.53	3.22	4.22	0.88	1.25
Merged-chr8-106953768-1	chr8	106953268	106954268	+	916.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	18018.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	9.15	11.06	3.7	21.59	11.2	15.27	6.34	5.75	7.49
Merged-chr11-6178839-2	chr11	6178347	6179347	+	916.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-5516.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	11.44	12.9	23.12	14.84	11.2	10.45	7.39	3.54	8.12
Merged-chr1-55838291-2	chr1	55837790	55838790	+	916.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92951.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	8.01	18.43	11.1	10.12	4.2	20.09	20.07	22.99	18.11
Merged-chr1-43303001-2	chr1	43302491	43303491	+	916.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106230.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	12.01	3.69	1.85	4.72	7.0	5.63	16.9	8.4	16.24
Merged-chr19-47621712-3	chr19	47621204	47622204	+	916.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164639, intron 9 of 17)	intron (NM_001164639, intron 9 of 17)	41685.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	12.01	11.52	7.4	4.72	5.6	14.47	6.34	4.42	13.74
Merged-chr7-45204607-3	chr7	45204114	45205114	+	916.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201374, exon 1 of 20)	exon (NM_201374, exon 1 of 20)	278.0	NM_201374	384619.0	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	5.72	2.76	6.47	5.4	5.13	2.41	1.06	1.33	2.5
Merged-chr10-42275553-3	chr10	42274978	42275978	+	916.5872800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019740, exon 2 of 4)	5' UTR (NM_019740, exon 2 of 4)	1264.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	66.93	49.76	42.55	69.5	55.98	46.62	82.38	66.33	43.09
Merged-chr2-152363577-3	chr2	152363081	152364081	+	916.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033505, intron 2 of 4)	intron (NR_033505, intron 2 of 4)	12985.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	6.29	1.84	0.92	6.07	1.4	4.82	2.11	1.33	7.49
Merged-chr6-108480185-3	chr6	108479682	108480682	+	916.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 46 of 61)	intron (NM_010585, intron 46 of 61)	-9561.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	72.65	43.77	25.9	74.22	33.59	50.64	7.39	3.1	3.12
Merged-chr1-64530930-3	chr1	64530448	64531448	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1856.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	20.59	22.58	14.8	23.62	9.8	10.45	21.12	17.69	16.86
Merged-chr6-31253380-3	chr6	31252889	31253889	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040257, intron 2 of 7)	(TGGGGG)n|Simple_repeat|Simple_repeat	33038.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	8.01	2.76	0.0	5.4	4.67	3.22	9.51	4.86	5.62
Merged-chr1-57472401-3	chr1	57471912	57472912	+	916.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-65738.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.57	4.15	4.62	5.4	4.67	4.02	4.22	0.88	1.25
Merged-chr4-109120941-3	chr4	109120432	109121432	+	916.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	L1MC1|LINE|L1	-2896.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	33.75	41.01	36.07	22.94	33.59	46.62	39.08	41.56	27.48
Merged-chr9-59294374-2	chr9	59293876	59294876	+	916.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2804.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	41.19	41.47	56.42	58.7	33.59	72.34	77.1	72.96	49.96
Merged-chr13-4770572-1	chr13	4770072	4771072	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-161408.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	25.74	19.35	2.77	31.04	38.25	14.47	12.67	3.1	11.24
Merged-chr11-43375166-3	chr11	43374671	43375671	+	916.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029558)	promoter-TSS (NR_029558)	-710.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	18.31	23.04	36.07	29.69	15.39	27.33	24.29	22.11	29.35
Merged-chr3-96767240-3	chr3	96766738	96767738	+	916.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	ORR1D1-int|LTR|ERVL-MaLR	39627.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	25.17	33.64	31.45	25.64	19.59	22.51	26.4	33.16	24.98
Merged-chr10-111161524-1	chr10	111161024	111162024	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3278.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	12.01	15.67	24.05	11.47	7.93	13.66	9.51	3.54	3.75
Merged-chr14-22845664-1	chr14	22845164	22846164	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	248907.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.57	3.23	5.55	5.4	4.67	9.65	4.22	0.44	5.0
Merged-chr17-33702360-2	chr17	33701851	33702851	+	916.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252480, intron 3 of 4)	B1F2|SINE|Alu	16326.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	4.0	2.76	0.0	6.75	4.67	1.61	9.51	9.73	6.25
Merged-chr7-134692636-3	chr7	134692142	134693142	+	916.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	ORR1D1|LTR|ERVL-MaLR	21955.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	29.75	26.26	29.6	48.58	25.66	40.99	45.42	31.84	38.1
Merged-chr1-144312752-3	chr1	144312254	144313254	+	916.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-63650.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	61.21	54.37	29.6	64.77	46.18	52.25	65.48	58.37	44.97
Merged-chr7-43546192-3	chr7	43545696	43546696	+	916.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13025.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	13.16	8.75	11.1	9.45	5.13	16.08	8.45	3.54	5.0
Merged-chr19-47539002-3	chr19	47538506	47539506	+	916.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67A|LTR|ERV1	-1887.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	5.72	8.29	1.85	8.1	2.33	8.84	6.34	6.19	9.99
Merged-chr4-63765248-3	chr4	63764724	63765724	+	916.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20111.0	NM_177371	326623.0	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	8.01	4.61	7.4	5.4	5.13	4.82	11.62	4.42	9.99
Merged-chr19-60663219-2	chr19	60662707	60663707	+	916.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-82184.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	4.58	5.53	0.0	29.69	11.66	16.08	24.29	16.36	2.5
Merged-chr4-46087129-3	chr4	46086579	46087579	+	916.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021883, intron 4 of 9)	intron (NM_021883, intron 4 of 9)	47857.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	26.89	33.64	30.52	31.04	48.52	86.81	34.85	28.74	49.96
Merged-chrX-160768515-3	chrX	160768014	160769014	+	916.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011302, intron 1 of 5)	intron (NM_011302, intron 1 of 5)	501.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	16.59	21.2	23.12	18.22	19.13	24.11	29.57	24.32	21.23
Merged-chrX-70385417-3	chrX	70384916	70385916	+	916.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026787)	promoter-TSS (NM_026787)	-497.0	NM_026787	68618.0	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	38.9	52.53	32.37	37.78	26.12	38.58	54.92	42.89	28.1
Merged-chr11-3141054-4	chr11	3140518	3141518	+	916.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 21 of 32)	B4A|SINE|B4	16997.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	66.36	111.97	109.14	94.46	133.89	158.35	11.62	10.61	126.78
Merged-chr11-63914519-3	chr11	63914018	63915018	+	916.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	7766.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.58	7.37	3.7	2.7	4.2	4.02	5.28	7.96	12.49
Merged-chr13-54206432-2	chr13	54205924	54206924	+	916.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	14291.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	6.86	8.75	5.55	14.17	4.67	6.43	7.39	3.98	2.5
Merged-chr1-138973702-2	chr1	138973193	138974193	+	916.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-3964.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	21.74	28.11	24.97	37.11	29.86	31.35	32.74	31.84	29.98
Merged-chr10-8926463-2	chr10	8925935	8926935	+	916.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-40365.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	10.87	4.61	5.55	6.75	3.27	8.04	38.02	38.47	25.61
Merged-chr12-111041357-3	chr12	111040839	111041839	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198023, intron 2 of 11)	intron (NM_198023, intron 2 of 11)	1541.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	12.59	13.36	9.25	10.8	4.67	6.43	10.56	6.63	1.87
Merged-chr7-83879518-3	chr7	83879027	83880027	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030705)	TTS (NM_030705)	4814.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	42.33	65.43	37.92	42.51	40.59	40.99	88.72	87.99	63.7
Merged-chr11-23217621-3	chr11	23217104	23218104	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38437.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	22.88	17.51	5.55	37.11	46.18	34.56	29.57	16.36	29.35
Merged-chr15-86203591-1	chr15	86203091	86204091	+	916.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10868.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	149.31	128.1	145.22	180.82	135.75	174.42	167.93	213.57	126.15
Merged-chr1-13207057-1	chr1	13206557	13207557	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-79894.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	2.29	0.92	12.95	8.1	5.13	6.43	8.45	3.54	3.75
Merged-chr4-109126280-1	chr4	109125780	109126780	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	Charlie29a|DNA|hAT-Charlie	-8244.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	11.44	5.07	7.4	10.8	2.8	3.22	5.28	6.19	9.99
Merged-chr17-23979710-3	chr17	23979216	23980216	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4486.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	56.63	42.39	10.17	60.72	53.65	27.33	140.47	146.8	70.57
Merged-chr3-84674911-1	chr3	84674411	84675411	+	916.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	U8|snRNA|snRNA	8719.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	4.58	3.69	0.92	6.75	2.8	4.02	5.28	2.21	6.87
Merged-chr7-144932569-3	chr7	144932063	144933063	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007631, exon 5 of 5)	3' UTR (NM_007631, exon 5 of 5)	7362.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	48.05	57.14	45.32	43.86	46.65	54.66	36.97	32.28	25.61
Merged-chr2-122570687-3	chr2	122570182	122571182	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40595.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	81.8	97.23	67.52	110.65	66.71	90.83	119.35	99.05	55.58
Merged-chr8-117079905-3	chr8	117079413	117080413	+	916.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 3 of 42)	intron (NM_029686, intron 3 of 42)	2536.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	8.58	2.3	7.4	2.7	4.2	1.61	1.06	0.44	3.12
Merged-chr3-69125998-3	chr3	69125475	69126475	+	916.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	1117.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	131.57	178.78	123.94	143.04	171.21	103.69	147.87	163.6	118.66
Merged-chr18-84809128-3	chr18	84808628	84809628	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42210.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.58	4.61	7.4	8.77	7.0	7.23	2.11	6.19	3.75
Merged-chr13-111942135-3	chr13	111941669	111942669	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	74233.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	81.23	75.11	52.72	53.3	23.33	33.76	27.46	27.86	16.24
Merged-chr15-89356566-3	chr15	89356069	89357069	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178919)	promoter-TSS (NM_178919)	850.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	125.28	184.77	144.29	97.83	92.84	112.53	134.14	192.34	116.16
Merged-chr7-114164492-3	chr7	114164051	114165051	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-46770.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	10.3	5.99	10.17	12.82	8.86	1.61	16.9	12.82	16.24
Merged-chr13-92651105-3	chr13	92650607	92651607	+	916.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	MIRb|SINE|MIR	39969.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	3.43	11.52	5.55	15.52	7.93	12.86	10.56	8.4	2.5
Merged-chr4-155490555-3	chr4	155490062	155491062	+	916.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160017)	promoter-TSS (NM_001160017)	-799.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	245.98	244.22	161.87	197.69	197.33	183.26	220.74	256.01	154.88
Merged-chr11-87426436-3	chr11	87425970	87426970	+	916.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-1121.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	288.32	224.86	131.34	232.78	165.14	152.72	238.7	220.2	79.94
Merged-chr15-86173846-2	chr15	86173361	86174361	+	916.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	L1MDa|LINE|L1	-11867.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	32.04	33.18	51.8	37.78	21.46	24.11	32.74	26.09	25.61
Merged-chr10-51433174-3	chr10	51432688	51433688	+	916.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47424.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	20.02	15.67	18.5	16.19	16.33	32.15	13.73	14.15	16.24
Merged-chr10-117145722-3	chr10	117145267	117146267	+	916.242065	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	2707.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	58.92	56.68	57.35	56.0	40.12	36.97	60.2	59.25	27.48
Merged-chr17-47595675-3	chr17	47595167	47596167	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2200.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	4.58	10.6	11.1	8.1	6.06	19.29	1.06	0.44	9.99
Merged-chr5-108636393-3	chr5	108635882	108636882	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	6572.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	8.58	5.53	3.7	6.07	3.73	12.86	6.34	11.5	8.74
Merged-chr2-58157135-3	chr2	58156646	58157646	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	2976.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	69.79	54.37	17.57	108.63	102.63	106.1	96.11	100.81	98.05
Merged-chr2-102979335-3	chr2	102978825	102979825	+	916.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77660.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	11.44	13.82	14.8	28.34	19.13	30.54	16.9	12.82	16.86
Merged-chr11-17185285-3	chr11	17184795	17185795	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 2 of 5)	L1_Mur3|LINE|L1	25997.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	59.49	49.3	35.15	44.53	31.26	50.64	15.84	16.8	13.74
Merged-chr7-122018471-3	chr7	122017962	122018962	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028758, intron 1 of 16)	intron (NM_028758, intron 1 of 16)	2736.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	7.44	3.23	9.25	5.4	2.8	7.23	4.22	2.21	5.0
Merged-chr3-116290296-3	chr3	116289782	116290782	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 13 of 13)	intron (NM_001173553, intron 13 of 13)	-36798.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	21.74	12.44	10.17	29.01	14.46	29.74	23.24	25.65	9.99
Merged-chr8-84235756-3	chr8	84235242	84236242	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172503, intron 1 of 13)	intron (NM_172503, intron 1 of 13)	1300.0	NM_172503	212168.0	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	56.06	43.31	12.02	68.82	26.59	21.7	36.97	27.41	18.74
Merged-chr5-76675566-3	chr5	76675053	76676053	+	916.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83839.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	6.86	4.61	9.25	9.45	3.73	2.41	3.17	2.21	5.62
Merged-chr12-108627570-2	chr12	108627073	108628073	+	916.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-8180.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	5.15	11.98	9.25	9.45	16.33	20.9	25.35	13.27	8.12
Merged-chr10-99168588-3	chr10	99168083	99169083	+	916.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	60448.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	88.1	68.66	42.55	97.16	60.18	50.64	88.72	58.37	41.84
Merged-chr13-117020722-3	chr13	117020215	117021215	+	916.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	4801.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	19.45	10.14	13.87	11.47	4.2	5.63	21.12	13.27	6.25
Merged-chr6-115539128-3	chr6	115538630	115539630	+	916.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5574.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	7.44	5.53	11.1	11.47	5.13	5.63	9.51	2.65	6.25
Merged-chr11-94128126-2	chr11	94127633	94128633	+	916.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83321.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.0	3.23	1.85	7.42	1.4	0.0	2.11	0.44	4.37
Merged-chr5-115507342-2	chr5	115506861	115507861	+	916.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	685.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	161.32	142.84	186.84	128.87	108.7	150.31	157.37	152.55	141.77
Merged-chr4-87652421-2	chr4	87651928	87652928	+	916.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153895.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	3.43	2.3	0.0	2.02	1.87	3.22	6.34	3.1	5.0
Merged-chr5-139282398-3	chr5	139281909	139282909	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	28912.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	13.16	7.83	8.32	12.82	4.2	5.63	9.51	6.63	16.86
Merged-chr12-106016444-3	chr12	106015942	106016942	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	L1MD|LINE|L1	6179.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	29.17	28.11	25.9	32.39	21.46	20.09	44.36	21.67	16.24
Merged-chr3-95174352-3	chr3	95173821	95174821	+	916.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011351)	TTS (NM_011351)	9982.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	5.15	4.61	4.62	8.1	2.8	3.22	2.11	3.54	2.5
Merged-chr6-31190769-3	chr6	31190282	31191282	+	916.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	intron (NR_110470, intron 1 of 2)	27692.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	45.19	40.55	33.3	51.28	32.19	25.72	48.58	47.75	26.23
Merged-chr8-31123507-2	chr8	31123008	31124008	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	11662.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	4.0	4.15	12.02	7.42	10.26	12.86	4.22	7.96	7.49
Merged-chr11-3913453-1	chr11	3912953	3913953	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_153142, exon 1 of 2)	5' UTR (NM_153142, exon 1 of 2)	1211.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	17.16	20.27	17.57	29.01	22.86	39.39	25.35	7.07	16.24
Merged-chr11-3169163-2	chr11	3168659	3169659	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	intron (NM_030207, intron 7 of 32)	24304.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	48.05	50.69	64.75	66.12	66.24	65.91	7.39	1.33	77.44
Merged-chr13-20398565-1	chr13	20398065	20399065	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-74425.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.86	4.61	6.47	5.4	7.0	6.43	2.11	4.42	9.99
Merged-chr8-46795522-2	chr8	46795029	46796029	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 2 of 7)	B1_Mur3|SINE|Alu	55784.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	28.6	29.03	17.57	41.83	19.59	36.17	28.52	33.16	21.23
Merged-chr9-7185028-1	chr9	7184528	7185528	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029775, intron 1 of 7)	CpG	523.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	128.14	111.97	112.84	143.71	100.3	86.01	123.57	83.57	51.21
Merged-chr1-172578274-1	chr1	172577774	172578774	+	916.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12294.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	1.14	5.07	5.55	3.37	0.93	2.41	12.67	7.07	9.37
Merged-chr11-20937153-1	chr11	20936653	20937653	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-106045.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.58	3.23	11.1	14.84	10.73	16.88	4.22	0.88	9.99
Merged-chr6-33791000-1	chr6	33790500	33791500	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 11 of 17)	intron (NM_009148, intron 11 of 17)	-238448.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	8.01	3.23	2.77	4.05	8.86	8.04	3.17	3.1	7.49
Merged-chr10-122794825-2	chr10	122794330	122795330	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	intron (NM_001110218, intron 2 of 9)	115515.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	31.46	17.05	15.72	37.11	28.46	24.11	40.14	31.39	19.98
Merged-chr7-48958995-3	chr7	48958492	48959492	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111016)	promoter-TSS (NM_001111016)	-81.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.29	2.3	2.77	3.37	2.8	1.61	5.28	0.0	8.12
Merged-chr13-114887545-1	chr13	114887045	114888045	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008396, intron 2 of 29)	intron (NM_008396, intron 2 of 29)	44555.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	8.58	7.83	1.85	4.05	6.53	1.61	6.34	6.63	0.0
Merged-chr16-33687590-3	chr16	33687105	33688105	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	3139.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	52.06	38.71	36.07	52.63	31.26	50.64	58.09	35.82	35.6
Merged-chr16-76232427-1	chr16	76231927	76232927	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109814.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	9.72	6.91	10.17	11.47	5.13	6.43	7.39	5.75	2.5
Merged-chr15-80497910-3	chr15	80497404	80498404	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163189, intron 4 of 5)	ORR1A2|LTR|ERVL-MaLR	-59301.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	4.58	3.23	0.0	10.8	1.87	4.82	5.28	2.21	3.75
Merged-chr10-93961840-3	chr10	93961324	93962324	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	2039.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	74.37	93.54	51.8	72.19	83.04	56.27	165.82	239.65	108.67
Merged-chr4-139204826-3	chr4	139204303	139205303	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	10692.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	89.24	58.52	102.67	56.68	31.26	71.54	119.35	84.45	63.08
Merged-chr2-94405659-3	chr2	94405217	94406217	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027831)	promoter-TSS (NR_027831)	972.0	NM_183106	74569.0	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	105.26	67.27	86.95	103.23	90.97	60.28	113.01	100.37	56.21
Merged-chrX-12136972-6	chrX	12136464	12137464	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045434, exon 3 of 4)	non-coding (NR_045434, exon 3 of 4)	23382.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	86.38	72.34	58.27	75.57	46.65	47.42	59.15	61.9	58.08
Merged-chr2-156729891-4	chr2	156729429	156730429	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	8650.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	101.83	143.76	92.5	117.4	118.03	124.59	109.84	104.35	97.43
Merged-chr2-78046196-1	chr2	78045696	78046696	+	916.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-4981.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.58	2.3	3.7	3.37	5.6	7.23	2.11	4.42	5.0
Merged-chr17-34346336-1	chr17	34345836	34346836	+	916.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	258.57	221.18	211.81	48.58	37.79	8.84	10.56	3.54	3.75
Merged-chr19-5569022-3	chr19	5568523	5569523	+	915.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033448, exon 2 of 2)	exon (NM_001033448, exon 2 of 2)	999.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	105.26	91.24	95.27	131.57	90.97	94.04	133.08	138.84	84.31
Merged-chr16-17111132-3	chr16	17110622	17111622	+	915.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252445, intron 1 of 19)	CpG	130.0	NM_001252445	66053.0	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	107.55	133.63	94.35	64.1	116.63	137.45	118.29	99.49	87.43
Merged-chr4-58911741-3	chr4	58911246	58912246	+	915.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355697, intron 1 of 49)	CpG	184.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	187.06	191.69	174.82	207.81	206.66	193.71	184.83	125.13	121.16
Merged-chr8-104375439-3	chr8	104374943	104375943	+	915.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	20364.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	30.32	35.48	17.57	37.78	15.86	17.68	32.74	28.3	14.99
Merged-chr6-148761606-3	chr6	148761113	148762113	+	915.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69854.0	NM_001081113	320727.0	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	12.59	13.36	14.8	10.12	11.2	6.43	15.84	7.96	11.24
Merged-chr4-102647248-3	chr4	102646756	102647756	+	915.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57413.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	57.21	78.33	60.12	51.95	48.98	67.52	64.43	86.66	46.22
Merged-chr11-9373332-3	chr11	9372843	9373843	+	915.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178259, exon 30 of 62)	exon (NM_178259, exon 30 of 62)	181401.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	6.29	7.37	1.85	6.75	10.26	17.68	13.73	5.31	8.12
Merged-chr10-117940833-1	chr10	117940333	117941333	+	915.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 3 of 3)	intron (NR_045342, intron 3 of 3)	15374.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	144.73	149.29	49.02	183.52	153.01	77.97	292.56	351.97	104.3
Merged-chr17-74442142-3	chr17	74441600	74442600	+	915.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 4 of 8)	MLTR18B_MM|LTR|ERVK	17008.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	46.34	33.64	29.6	32.39	18.19	20.09	29.57	19.9	11.24
Merged-chr4-59265841-3	chr4	59265362	59266362	+	915.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105031, intron 3 of 3)	intron (NR_105031, intron 3 of 3)	5811.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	25.74	25.34	42.55	35.76	29.86	35.37	48.58	20.34	19.98
Merged-chrX-93756611-3	chrX	93756119	93757119	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75476.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	163.61	255.27	123.94	163.96	223.92	127.0	154.2	196.76	88.06
Merged-chr2-102973102-4	chr2	102972564	102973564	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71399.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	56.06	46.08	24.05	89.06	55.51	63.5	68.65	83.13	53.08
Merged-chr17-26090439-3	chr17	26089922	26090922	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011933)	promoter-TSS (NM_011933)	-258.0	NM_011933	26378.0	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	11.44	7.83	12.95	11.47	11.2	16.88	13.73	13.71	9.99
Merged-chr6-88904939-6	chr6	88904449	88905449	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	PB1D10|SINE|Alu	2698.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	116.7	76.49	34.22	114.7	101.7	57.07	70.76	54.39	19.36
Merged-chr14-62865636-3	chr14	62865158	62866158	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105860)	TTS (NR_105860)	116.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	56.06	57.14	42.55	66.12	39.19	44.21	65.48	53.5	48.09
Merged-chr6-52471755-3	chr6	52471245	52472245	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20706.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	6.86	7.37	1.85	6.75	5.6	4.02	6.34	8.84	9.99
Merged-chr10-37359139-3	chr10	37358629	37359629	+	915.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-220203.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	44.05	42.85	37.92	35.76	40.12	36.97	41.19	42.45	33.72
Merged-chr7-118481594-2	chr7	118481075	118482075	+	915.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10400.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	49.2	46.08	41.62	60.72	41.05	65.91	114.07	134.86	108.67
Merged-chr7-80081424-1	chr7	80080924	80081924	+	915.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146000, exon 2 of 6)	exon (NM_001146000, exon 2 of 6)	-6167.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	19.45	13.82	18.5	17.54	12.13	16.08	13.73	11.05	8.12
Merged-chr13-105310789-4	chr13	105310261	105311261	+	915.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16276.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	30.32	32.72	32.37	30.36	21.46	42.6	16.9	30.07	32.48
Merged-chr13-49213760-3	chr13	49213206	49214206	+	915.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	2320.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	20.02	6.45	13.87	26.31	13.53	7.23	14.79	8.84	6.25
Merged-chr5-134342766-3	chr5	134342283	134343283	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16329.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	39.47	34.56	11.1	43.86	25.19	25.72	41.19	40.24	21.86
Merged-chr5-76705627-3	chr5	76705118	76706118	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	113904.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	16.59	28.11	22.2	37.78	33.59	31.35	72.88	55.27	36.85
Merged-chr10-117866329-3	chr10	117865824	117866824	+	915.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20350.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	101.83	114.27	34.22	124.82	114.76	51.44	146.81	184.83	66.2
Merged-chr10-40832407-3	chr10	40831901	40832901	+	915.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027879, exon 15 of 15)	3' UTR (NM_027879, exon 15 of 15)	50742.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	25.74	21.66	10.17	25.64	20.99	5.63	46.47	31.84	8.74
Merged-chr2-91081140-4	chr2	91080589	91081589	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10774.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	165.32	131.32	83.25	143.04	100.77	87.61	128.85	126.9	60.58
Merged-chr16-91861548-3	chr16	91861102	91862102	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	70028.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	66.36	76.03	56.42	109.3	93.77	110.92	107.73	103.47	61.83
Merged-chr19-32953513-3	chr19	32953030	32954030	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	195953.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	31.46	44.24	35.15	31.71	22.86	15.27	28.52	16.8	38.72
Merged-chr6-128135942-3	chr6	128135417	128136417	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	7661.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	72.08	90.31	68.45	51.28	43.85	40.19	95.06	126.46	44.97
Merged-chr5-9059535-3	chr5	9059045	9060045	+	915.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41192.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	18.31	14.75	9.25	14.84	8.86	13.66	17.96	14.59	7.49
Merged-chr17-37483665-2	chr17	37483154	37484154	+	915.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347387)	promoter-TSS (NM_001347387)	-100.0	NM_001347387	14990.0	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	16.02	12.44	5.55	2.02	1.87	0.0	6.34	3.1	5.0
Merged-chr13-69559330-2	chr13	69558826	69559826	+	915.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-E-int|LTR|ERVL	-25462.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	18.88	11.98	18.5	23.62	11.2	13.66	2.11	1.77	2.5
Merged-chr5-43186813-3	chr5	43186302	43187302	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-46661.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	42.9	53.91	61.05	78.94	76.51	69.93	129.91	135.3	81.81
Merged-chrX-142228262-3	chrX	142227779	142228779	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	102.0	NM_172782	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	53.77	52.07	48.1	60.05	34.99	36.97	68.65	87.55	48.71
Merged-chr8-26884615-3	chr8	26884126	26885126	+	915.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-60203.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	55.49	42.39	34.22	93.79	76.97	50.64	81.33	48.64	25.61
Merged-chr10-94405684-3	chr10	94405170	94406170	+	915.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	L2c|LINE|L2	93721.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	21.74	11.52	17.57	12.14	9.8	25.72	13.73	19.9	15.61
Merged-chr16-85172640-5	chr16	85172146	85173146	+	915.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	CpG	1061.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	66.93	69.58	98.05	54.65	67.64	69.13	65.48	50.41	38.72
Merged-chr11-61929499-3	chr11	61929002	61930002	+	915.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019921, intron 1 of 14)	intron (NM_019921, intron 1 of 14)	755.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	191.64	206.89	155.39	147.09	200.6	161.56	222.86	241.42	137.4
Merged-chr2-180124859-2	chr2	180124353	180125353	+	915.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	5487.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	41.76	55.29	34.22	62.75	40.12	27.33	7.39	3.1	1.25
Merged-chr13-59834990-2	chr13	59834495	59835495	+	915.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11848.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	34.9	23.96	11.1	33.06	9.33	21.7	6.34	3.98	5.0
Merged-chr18-58530604-3	chr18	58530098	58531098	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25642.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	26.89	29.95	36.07	37.78	44.32	73.95	34.85	34.49	41.22
Merged-chr6-113001023-3	chr6	113000447	113001447	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45355.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	9.15	11.52	10.17	14.17	5.6	7.23	8.45	3.98	9.99
Merged-chr4-149638128-3	chr4	149637633	149638633	+	915.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023051, intron 9 of 18)	intron (NM_023051, intron 9 of 18)	17434.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	5.15	6.45	12.95	9.45	8.4	4.02	5.28	1.33	13.74
Merged-chr12-112746907-2	chr12	112746407	112747407	+	915.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001024602)	TTS (NM_001024602)	13585.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	8.01	5.07	2.77	10.12	4.2	3.22	5.28	6.63	3.75
Merged-chr12-100609985-3	chr12	100609487	100610487	+	915.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 5 of 17)	intron (NM_153587, intron 5 of 17)	-89165.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	13.73	14.75	9.25	10.8	7.46	10.45	6.34	8.4	12.49
Merged-chr15-80088804-3	chr15	80088319	80089319	+	915.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2515.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	7.44	5.07	0.0	4.05	1.87	0.0	2.11	5.75	0.0
Merged-chr13-111968749-3	chr13	111968260	111969260	+	915.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100824.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	39.47	48.38	22.2	176.1	169.34	86.81	118.29	154.32	46.22
Merged-chr8-70841322-3	chr8	70840834	70841834	+	915.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_032397)	TTS (NM_032397)	-1614.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	11.44	7.83	4.62	15.52	8.4	20.09	9.51	7.96	6.25
Merged-chr4-105478467-2	chr4	105477972	105478972	+	915.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	321125.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	26.31	31.33	9.25	44.53	43.85	42.6	39.08	48.64	17.49
Merged-chr4-132178791-3	chr4	132178304	132179304	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33452.0	NM_145393	213541.0	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	5.72	3.23	15.72	14.84	2.8	1.61	7.39	1.33	7.49
Merged-chr1-155413629-3	chr1	155413122	155414122	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	3822.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	60.64	58.52	33.3	64.1	53.18	59.48	68.65	76.49	34.97
Merged-chr2-27739596-3	chr2	27739023	27740023	+	915.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 2 of 9)	intron (NM_001290481, intron 2 of 9)	28940.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	183.63	174.64	123.94	209.16	133.42	219.43	151.03	159.62	109.92
Merged-chr12-112631642-2	chr12	112631115	112632115	+	915.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	intron (NM_007421, intron 2 of 12)	11568.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	56.63	46.08	73.07	65.45	38.25	85.2	64.43	64.11	42.47
Merged-chr5-105145930-3	chr5	105145411	105146411	+	915.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6325.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	81.8	82.48	56.42	47.9	36.85	28.13	59.15	89.32	58.08
Merged-chr11-86819431-2	chr11	86818959	86819959	+	915.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11799.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	4.0	2.3	10.17	38.46	38.72	54.66	44.36	51.29	61.2
Merged-chr12-101759908-3	chr12	101759424	101760424	+	915.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361987, intron 9 of 10)	intron (NM_001361987, intron 9 of 10)	-41401.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	9.15	11.98	5.55	8.77	10.73	13.66	8.45	4.86	8.74
Merged-chr6-38742697-1	chr6	38742197	38743197	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 6 of 14)	intron (NM_010433, intron 6 of 14)	79628.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	8.01	4.61	8.32	12.14	10.73	9.65	5.28	8.4	11.24
Merged-chr13-112335815-1	chr13	112335315	112336315	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168403, intron 5 of 11)	intron (NM_001168403, intron 5 of 11)	47297.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.0	4.15	5.55	12.82	13.06	8.04	3.17	3.1	5.62
Merged-chr2-33436449-3	chr2	33435937	33436937	+	915.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5113.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	10.87	10.14	4.62	16.87	10.26	4.82	21.12	8.4	4.37
Merged-chr7-126625597-3	chr7	126625106	126626106	+	915.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-136.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	33.75	20.27	22.2	35.76	27.99	57.07	63.37	41.56	48.71
Merged-chr12-113153332-1	chr12	113152832	113153832	+	915.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007763, exon 2 of 5)	exon (NM_007763, exon 2 of 5)	1320.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	34.32	36.4	40.7	49.25	33.12	50.64	22.18	27.86	19.98
Merged-chr3-89242651-3	chr3	89242167	89243167	+	915.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121683, intron 3 of 10)	intron (NR_121683, intron 3 of 10)	2346.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	4.0	0.46	1.85	6.75	1.4	4.82	1.06	3.1	2.5
Merged-chr6-140888925-3	chr6	140888435	140889435	+	915.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262050.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.43	4.61	0.0	3.37	4.2	1.61	2.11	3.1	5.0
Merged-chr2-154406790-3	chr2	154406266	154407266	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009228, intron 1 of 7)	MIR3|SINE|MIR	1318.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	45.76	56.68	49.02	48.58	69.98	65.91	59.15	86.22	41.22
Merged-chr7-98672737-3	chr7	98672246	98673246	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16177.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	42.33	48.38	52.72	58.03	45.72	67.52	49.64	42.45	39.35
Merged-chr19-29498095-3	chr19	29497595	29498595	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	23892.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	43.48	33.64	43.47	39.81	53.18	45.01	51.75	58.81	21.23
Merged-chr3-87329956-3	chr3	87329471	87330471	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-27910.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	14.87	21.2	17.57	18.22	13.53	13.66	121.46	130.44	79.32
Merged-chr3-58657549-3	chr3	58657047	58658047	+	915.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	5505.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	4.58	10.14	1.85	4.05	2.8	12.86	8.45	2.65	5.0
Merged-chr10-91701984-3	chr10	91701465	91702465	+	915.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186864.0	NR_152729	102633867.0	Mm.351514	NR_152729	ENSMUSG00000111657	Gm31592	-	predicted gene, 31592	ncRNA	15.45	15.67	16.65	23.62	17.73	20.9	20.07	8.4	8.12
Merged-chr7-67440830-3	chr7	67440325	67441325	+	915.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67967.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	15.45	23.04	15.72	22.94	24.26	14.47	21.12	12.82	17.49
Merged-chr7-112000333-3	chr7	111999818	112000818	+	915.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-23188.0	NM_133758	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	7.44	4.15	16.65	4.05	5.13	8.04	35.91	43.77	17.49
Merged-chr8-111743859-1	chr8	111743359	111744359	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009954)	promoter-TSS (NM_009954)	-10.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	5.72	2.3	3.7	17.54	5.13	4.82	3.17	0.0	0.0
Merged-chr19-56535232-1	chr19	56534732	56535732	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153440, intron 8 of 9)	L1MB7|LINE|L1	12890.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	7.44	3.69	3.7	10.8	17.73	18.49	9.51	0.88	7.49
Merged-chr7-54836269-1	chr7	54835769	54836769	+	915.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	1024.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	1.72	2.3	4.62	1.35	1.4	4.02	3.17	0.44	7.49
Merged-chr2-153292611-3	chr2	153292147	153293147	+	915.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	1231.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	36.61	33.18	20.35	30.36	23.33	19.29	31.69	24.76	9.99
Merged-chr7-45155092-3	chr7	45154589	45155589	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285904)	promoter-TSS (NM_001285904)	-551.0	NM_145954	69748.0	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	107.55	99.07	49.02	89.74	75.57	83.59	51.75	64.56	35.6
Merged-chr11-69401401-3	chr11	69400898	69401898	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017426, intron 17 of 22)	intron (NM_001017426, intron 17 of 22)	-3164.0	NM_025915	67020.0	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	6.86	10.6	12.95	8.77	3.73	11.25	3.17	5.31	5.0
Merged-chr3-65973519-3	chr3	65973014	65974014	+	915.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15265.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	8.01	10.6	15.72	18.89	7.93	16.88	20.07	16.36	3.75
Merged-chr12-84180893-3	chr12	84180400	84181400	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	B4A|SINE|B4	13115.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	31.46	21.66	37.0	16.87	10.73	14.47	40.14	15.48	26.23
Merged-chr6-55017810-3	chr6	55017313	55018313	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20188.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	8.58	9.22	11.1	19.57	15.39	16.88	12.67	4.42	8.12
Merged-chr2-29787652-3	chr2	29787141	29788141	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	30.0	NM_001290496	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	22.31	32.72	38.85	31.71	31.26	47.42	52.81	44.22	26.85
Merged-chr9-5309518-2	chr9	5309008	5310008	+	915.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	intron (NM_007609, intron 1 of 8)	659.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	203.65	264.49	116.54	206.46	158.15	125.39	172.16	198.53	100.55
Merged-chr3-136113195-3	chr3	136112717	136113717	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	212849.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	9.72	18.89	7.4	8.77	16.33	12.06	5.28	6.19	8.74
Merged-chr15-81103899-3	chr15	81103395	81104395	+	915.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	1152.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	161.89	162.2	104.52	211.19	179.61	133.43	179.55	160.51	90.56
Merged-chr12-32138547-2	chr12	32138045	32139045	+	915.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69793.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	10.3	12.9	21.27	20.24	16.79	19.29	12.67	8.4	9.99
Merged-chr1-66818274-2	chr1	66817749	66818749	+	915.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122738)	promoter-TSS (NM_001122738)	-654.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	87.52	63.59	42.55	105.26	90.97	78.77	118.29	110.1	60.58
Merged-chr1-13370578-3	chr1	13370087	13371087	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	1842.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.72	8.29	5.55	4.05	4.2	8.04	12.67	6.63	6.25
Merged-chr8-77444894-3	chr8	77444303	77445303	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-72253.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	13.16	18.89	18.5	70.85	41.05	46.62	24.29	24.76	26.23
Merged-chr6-148989686-3	chr6	148989203	148990203	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177192, exon 21 of 21)	3' UTR (NM_177192, exon 21 of 21)	-43233.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	8.58	8.29	1.85	6.75	4.67	17.68	10.56	9.29	5.0
Merged-chr11-82845497-3	chr11	82844953	82845953	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164570, intron 1 of 7)	intron (NM_001164570, intron 1 of 7)	-16410.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	54.92	64.97	23.12	80.97	63.45	54.66	90.83	45.1	43.72
Merged-chr13-67637370-3	chr13	67636863	67637863	+	915.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183146, intron 1 of 3)	intron (NM_183146, intron 1 of 3)	390.0	NM_183146	212281.0	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	132.14	206.43	120.24	116.05	211.33	193.71	224.97	190.13	85.56
Merged-chr2-5691980-3	chr2	5691509	5692509	+	915.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	-15963.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	34.9	21.2	17.57	35.09	33.12	38.58	35.91	37.14	25.61
Merged-chr14-118910113-3	chr14	118909628	118910628	+	915.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360412, intron 8 of 22)	PB1D10|SINE|Alu	12663.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	108.69	90.31	36.07	114.7	68.58	52.25	109.84	81.8	31.85
Merged-chr13-8644172-3	chr13	8643666	8644666	+	915.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	ORR1E|LTR|ERVL-MaLR	226878.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	31.46	29.49	9.25	102.56	99.83	87.61	77.1	76.05	39.97
Merged-chr10-86296261-3	chr10	86295618	86296618	+	915.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164495, intron 6 of 6)	intron (NM_001164495, intron 6 of 6)	-4294.0	NM_011595	21859.0	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	13.16	10.14	17.57	6.07	2.33	10.45	21.12	13.71	7.49
Merged-chr18-81536939-3	chr18	81536420	81537420	+	915.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	455160.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	4.0	3.69	3.7	0.67	6.53	5.63	7.39	2.65	1.25
Merged-chr5-77167516-1	chr5	77167016	77168016	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43689.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	2.29	0.92	0.0	3.37	2.8	4.82	0.0	3.54	5.0
Merged-chr2-79677839-1	chr2	79677339	79678339	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29941.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	2.86	5.07	0.0	4.05	7.93	6.43	7.39	4.42	8.12
Merged-chr17-32492480-1	chr17	32491980	32492980	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177307, exon 14 of 14)	3' UTR (NM_177307, exon 14 of 14)	-13982.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	2.86	3.23	1.85	6.75	1.87	6.43	6.34	0.88	1.25
Merged-chr1-62715183-1	chr1	62714683	62715683	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	B3|SINE|B2	11866.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	9.72	16.13	9.25	3.37	1.87	3.22	1.06	2.21	2.5
Merged-chr1-143956384-1	chr1	143955884	143956884	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47765.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.72	5.53	9.25	12.82	2.8	6.43	5.28	5.31	15.61
Merged-chr17-34312439-3	chr17	34311942	34312942	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	intron (NM_010382, intron 2 of 5)	6575.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	91.53	65.43	62.9	20.92	6.06	19.29	59.15	65.0	48.71
Merged-chr13-24037684-1	chr13	24037184	24038184	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026825, intron 33 of 37)	intron (NM_026825, intron 33 of 37)	-46470.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	5.15	2.3	7.4	11.47	2.8	3.22	1.06	2.21	7.49
Merged-chr12-38594292-2	chr12	38593791	38594791	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045943, intron 1 of 8)	intron (NR_045943, intron 1 of 8)	20230.0	NR_045943	73867.0	Mm.78933	NR_045943	ENSMUSG00000112967	4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	10.3	14.75	9.25	14.17	11.2	12.06	14.79	10.61	6.25
Merged-chr1-151103841-1	chr1	151103341	151104341	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34193.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	10.87	11.98	12.02	10.12	7.0	8.04	27.46	13.71	16.24
Merged-chr2-160250095-1	chr2	160249595	160250595	+	915.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77399.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	61.78	41.93	39.77	47.23	31.72	41.8	82.38	60.58	33.72
Merged-chr12-55482269-1	chr12	55481769	55482769	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10378.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	9.15	4.15	5.55	1.35	2.33	3.22	0.0	2.65	6.25
Merged-chr8-43368739-1	chr8	43368239	43369239	+	915.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61730.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	2.86	1.84	0.92	3.37	1.87	3.22	14.79	6.63	6.87
Merged-chr12-8947875-3	chr12	8947389	8948389	+	915.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-40.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	13.16	11.06	5.55	15.52	13.06	8.84	15.84	10.61	9.37
Merged-chr7-113197418-3	chr7	113196924	113197924	+	914.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10041.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	48.62	60.36	38.85	37.78	52.72	48.23	57.03	32.28	29.98
Merged-chr9-116164189-3	chr9	116163682	116164682	+	914.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	11181.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	48.62	49.3	25.9	78.27	39.19	55.46	33.8	20.78	18.11
Merged-chr5-74471964-3	chr5	74471465	74472465	+	914.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 3 of 8)	intron (NM_001114660, intron 3 of 8)	59777.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	13.73	6.45	0.0	8.1	7.0	9.65	7.39	12.38	6.25
Merged-chr9-114815508-3	chr9	114814999	114815999	+	914.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	28653.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.0	3.69	5.55	7.42	3.27	1.61	6.34	1.33	6.25
Merged-chr7-122813968-3	chr7	122813470	122814470	+	914.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	142226.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	6.86	5.07	9.25	5.4	2.8	12.86	13.73	13.27	8.74
Merged-chr19-55544629-3	chr19	55544129	55545129	+	914.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	L1MB8|LINE|L1	157575.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	23.45	20.74	7.4	27.66	9.8	16.08	19.01	15.03	12.49
Merged-chr3-83798008-3	chr3	83797516	83798516	+	914.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31695.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	6.86	2.76	0.0	1.35	1.4	1.61	1.06	6.19	0.0
Merged-chr3-145649426-2	chr3	145648936	145649936	+	914.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010516, intron 1 of 4)	CpG	549.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	4.58	0.92	1.85	10.12	8.86	16.88	5.28	5.31	6.25
Merged-chr18-39542019-3	chr18	39541526	39542526	+	914.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54781.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	3.43	7.37	7.4	8.1	7.0	3.22	9.51	4.86	12.49
Merged-chr7-38025068-3	chr7	38024577	38025577	+	914.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-5525.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	42.33	43.77	39.77	30.36	22.86	24.11	6.34	3.54	5.0
Merged-chr17-23985179-2	chr17	23984692	23985692	+	914.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-9962.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	6.86	6.91	3.7	8.1	9.33	3.22	12.67	13.27	9.99
Merged-chr8-22807367-4	chr8	22806856	22807856	+	914.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1702.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	70.36	110.59	55.5	74.89	44.78	75.56	83.44	166.7	90.56
Merged-chr14-70213241-2	chr14	70212729	70213729	+	914.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5558.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	160.18	157.13	86.95	134.94	144.62	133.43	157.37	179.08	101.17
Merged-chr11-99447280-3	chr11	99446785	99447785	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-9132.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	47.48	70.5	81.4	62.07	42.45	67.52	111.96	93.74	65.58
Merged-chr15-25322259-3	chr15	25321757	25322757	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91507.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	86.38	89.39	74.0	82.32	107.76	104.49	106.67	124.69	71.2
Merged-chr10-94333534-3	chr10	94333036	94334036	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	21587.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.58	4.15	10.17	8.77	4.2	1.61	5.28	7.52	6.25
Merged-chr10-20056476-3	chr10	20055967	20056967	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-92453.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	50.34	45.62	49.95	65.45	43.85	50.64	80.27	71.63	54.96
Merged-chr5-19952571-3	chr5	19952053	19953053	+	914.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	45035.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	38.33	51.15	32.37	41.16	32.19	56.27	55.98	49.96	26.85
Merged-chr13-119488025-3	chr13	119487535	119488535	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039244)	promoter-TSS (NM_001039244)	-4.0	NM_001039244	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	30.89	15.67	12.95	28.34	14.93	21.7	29.57	18.13	24.36
Merged-chr18-65506018-3	chr18	65505511	65506511	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	MTC-int|LTR|ERVL-MaLR	-74219.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	160.75	178.78	118.39	178.8	199.67	126.19	48.58	46.87	16.86
Merged-chr18-90509488-3	chr18	90509018	90510018	+	914.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198295)	promoter-TSS (NM_198295)	-636.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	109.83	148.83	111.92	88.39	118.03	106.9	118.29	170.23	98.05
Merged-chr6-136717724-1	chr6	136717224	136718224	+	914.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	intron (NM_145067, intron 18 of 25)	-55831.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	3.43	3.23	0.92	2.02	1.4	0.0	24.29	29.18	11.24
Merged-chr10-86685529-4	chr10	86685035	86686035	+	914.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015572)	promoter-TSS (NR_015572)	8.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	37.18	36.4	18.5	48.58	47.12	31.35	96.11	67.65	34.97
Merged-chr6-93757569-3	chr6	93757059	93758059	+	914.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029850, intron 9 of 23)	intron (NM_001029850, intron 9 of 23)	155404.0	NR_104594	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	41.19	33.18	37.0	56.68	74.17	47.42	40.14	34.93	9.37
Merged-chrX-36841895-3	chrX	36841395	36842395	+	914.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22351.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	14.3	14.75	10.17	9.45	7.46	12.86	15.84	10.61	8.74
Merged-chr7-27508761-3	chr7	27508271	27509271	+	914.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 5 of 5)	B3|SINE|B2	9447.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	34.32	40.55	37.0	30.36	22.39	72.34	47.53	39.35	46.84
Merged-chr16-93606826-3	chr16	93606325	93607325	+	914.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	22.88	14.75	1.85	15.52	7.46	4.82	19.01	11.5	13.12
Merged-chr2-62685450-2	chr2	62684946	62685946	+	914.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145523, intron 3 of 7)	intron (NM_145523, intron 3 of 7)	21119.0	NM_145523	227960.0	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	6.29	3.69	0.0	10.8	10.26	3.22	16.9	15.03	8.74
Merged-chr7-120831025-6	chr7	120830530	120831530	+	914.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11801.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	90.38	82.94	100.82	64.1	65.31	76.36	82.38	55.27	39.97
Merged-chr9-20690697-3	chr9	20690200	20691200	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	L1_Mus1|LINE|L1	36303.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	2.86	1.84	1.85	3.37	3.73	3.22	3.17	3.54	6.25
Merged-chr18-65555130-1	chr18	65554630	65555630	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	LTR16E1|LTR|ERVL	-25100.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	1.72	0.92	3.7	3.37	3.73	4.02	2.11	1.33	3.75
Merged-chr11-102246451-3	chr11	102245945	102246945	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2437.0	NM_153544	217216.0	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	12.01	17.51	21.27	62.75	48.98	38.58	51.75	40.24	23.11
Merged-chr13-63246636-1	chr13	63246136	63247136	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	6607.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	24.03	23.96	12.95	39.81	34.52	22.51	23.24	18.57	5.0
Merged-chr8-14815866-1	chr8	14815366	14816366	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-72670.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	25.74	36.86	39.77	35.09	34.06	27.33	61.26	43.77	25.61
Merged-chr6-97299550-1	chr6	97299050	97300050	+	914.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 20 of 23)	ORR1F|LTR|ERVL-MaLR	-46770.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.72	8.29	11.1	12.14	7.0	12.06	13.73	11.05	14.99
Merged-chr18-21669945-1	chr18	21669445	21670445	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17577.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	2.86	7.37	5.55	4.05	4.2	4.82	0.0	5.31	6.87
Merged-chr6-42645387-1	chr6	42644887	42645887	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146174)	promoter-TSS (NM_146174)	-346.0	NM_146174	232748.0	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	1.72	0.92	0.0	2.02	2.33	1.61	5.28	1.33	2.5
Merged-chr1-82761935-3	chr1	82761438	82762438	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	6518.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	29.17	38.25	37.0	30.36	25.19	63.5	38.02	30.07	32.48
Merged-chr10-7333585-2	chr10	7333082	7334082	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121345.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	5.72	0.0	0.0	7.42	2.8	3.22	4.22	3.54	0.62
Merged-chr1-185276053-1	chr1	185275553	185276553	+	914.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 29 of 34)	L3|LINE|CR1	33078.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	9.15	2.76	6.47	18.22	20.53	16.08	1.06	0.44	3.75
Merged-chr1-39602663-3	chr1	39602164	39603164	+	914.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-25317.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	14.3	11.06	18.5	9.45	12.13	6.43	12.67	4.86	19.98
Merged-chr14-54579831-1	chr14	54579331	54580331	+	914.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2170.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	3.43	9.68	12.95	6.07	10.73	15.27	32.74	34.93	31.23
Merged-chrX-10729676-2	chrX	10729171	10730171	+	914.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12306.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	6.86	10.6	2.77	19.57	8.86	24.11	11.62	14.15	3.75
Merged-chr11-51926395-2	chr11	51925896	51926896	+	914.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41235.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	96.68	111.51	86.02	106.61	125.96	106.1	129.91	167.14	68.07
Merged-chr11-22008239-2	chr11	22007738	22008738	+	914.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252515, intron 23 of 24)	intron (NM_001252515, intron 23 of 24)	-6587.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	2.29	3.69	0.0	4.05	3.73	1.61	3.17	2.21	1.25
Merged-chr3-84314741-3	chr3	84314238	84315238	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9963.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	1.72	1.84	3.7	10.12	4.67	4.82	6.34	6.63	8.74
Merged-chr3-133335310-3	chr3	133334810	133335810	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293641, intron 5 of 11)	intron (NM_001293641, intron 5 of 11)	25200.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	9.72	5.07	16.65	12.82	5.6	2.41	30.63	26.09	16.86
Merged-chr6-125071904-3	chr6	125071417	125072417	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	640.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	51.48	57.14	52.72	79.62	77.91	88.42	77.1	61.02	39.35
Merged-chr7-110627503-3	chr7	110626957	110627957	+	914.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009627)	promoter-TSS (NM_009627)	-200.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	22.31	12.44	1.85	20.24	30.32	29.74	28.52	36.7	35.6
Merged-chr14-68593585-3	chr14	68593066	68594066	+	914.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11494.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	20.59	30.41	9.25	18.22	25.19	45.01	12.67	13.71	17.49
Merged-chr16-50046099-5	chr16	50045595	50046595	+	914.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	26757.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	12.59	7.37	1.85	15.52	9.33	9.65	13.73	3.98	6.25
Merged-chr2-153122891-3	chr2	153122377	153123377	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	14409.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	56.06	41.93	21.27	83.66	74.64	51.44	71.82	80.47	58.71
Merged-chr2-72366154-3	chr2	72365661	72366661	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	80460.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	84.09	111.05	60.12	69.5	80.24	70.73	130.97	138.4	56.21
Merged-chr17-6697347-3	chr17	6696844	6697844	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183370, intron 1 of 12)	intron (NM_183370, intron 1 of 12)	8272.0	NM_183370	83672.0	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.57	2.76	5.55	3.37	1.4	0.8	2.11	0.0	1.87
Merged-chr10-8776136-3	chr10	8775621	8776621	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	109949.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	33.75	31.33	25.9	45.88	30.32	50.64	23.24	27.41	17.49
Merged-chr7-4067262-3	chr7	4066770	4067770	+	914.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4066.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	16.59	14.28	14.8	18.89	11.2	19.29	20.07	15.92	15.61
Merged-chr18-61132981-3	chr18	61132482	61133482	+	914.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134134, intron 20 of 20)	intron (NM_134134, intron 20 of 20)	15514.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	27.46	26.26	26.82	15.52	15.86	31.35	21.12	26.09	24.98
Merged-chr17-80565223-3	chr17	80564738	80565738	+	914.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360144, intron 1 of 9)	MMERVK10D3_I-int|LTR|ERVK	-1404.0	NM_001033443	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	84.09	78.79	52.72	45.21	41.52	33.76	31.69	38.91	23.73
Merged-chr14-47507456-1	chr14	47506956	47507956	+	914.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 3 of 5)	intron (NR_027414, intron 3 of 5)	34895.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	16.02	11.06	5.55	9.45	5.13	12.86	76.05	78.71	71.2
Merged-chr5-113645758-2	chr5	113645236	113646236	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	-2133.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	78.94	120.26	123.02	119.43	76.04	120.57	149.98	106.12	64.95
Merged-chr2-155757067-1	chr2	155756567	155757567	+	914.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	5850.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	18.88	20.27	24.05	2.7	1.87	3.22	51.75	41.56	31.85
Merged-chr5-92256687-3	chr5	92256180	92257180	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011148)	promoter-TSS (NM_011148)	-402.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	26.31	11.52	14.8	26.31	10.26	12.06	17.96	13.27	6.87
Merged-chr15-53318161-2	chr15	53317668	53318668	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	28015.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.72	4.61	4.62	11.47	4.2	6.43	5.28	4.86	5.0
Merged-chr12-31917496-2	chr12	31917011	31918011	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163126, intron 19 of 22)	intron (NM_001163126, intron 19 of 22)	32734.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	8.01	13.82	9.25	5.4	8.86	8.04	24.29	9.73	19.36
Merged-chr14-17427084-1	chr14	17426584	17427584	+	914.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-233876.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	16.02	25.8	24.97	15.52	20.99	47.42	29.57	19.01	19.36
Merged-chr7-118764151-3	chr7	118763656	118764656	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 8 of 30)	RMER19B|LTR|ERVK	23885.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	8.58	8.75	14.8	16.87	21.46	13.66	28.52	14.59	9.99
Merged-chr16-30188174-3	chr16	30187668	30188668	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79364.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.43	2.76	0.0	12.82	10.26	9.65	14.79	5.75	7.49
Merged-chr8-122438159-3	chr8	122437657	122438657	+	914.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028354, intron 5 of 10)	intron (NR_028354, intron 5 of 10)	-5217.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	29.75	28.11	28.67	24.29	16.79	39.39	22.18	11.94	7.49
Merged-chr10-20663172-3	chr10	20662692	20663692	+	914.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	61886.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	47.48	39.17	24.97	37.11	29.86	43.4	30.63	24.76	14.36
Merged-chr4-135829198-3	chr4	135828639	135829639	+	914.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26932.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	49.77	39.63	32.37	50.6	31.26	77.97	80.27	61.02	41.84
Merged-chr10-80151304-3	chr10	80150809	80151809	+	914.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 2 of 7)	CT-rich|Low_complexity|Low_complexity	1627.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	44.62	39.17	58.27	27.66	33.12	38.58	64.43	58.81	57.46
Merged-chrX-112311495-4	chrX	112311053	112312053	+	914.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313734, intron 1 of 6)	intron (NM_001313734, intron 1 of 6)	201.0	NM_026565	68117.0	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	126.42	168.19	117.47	115.38	152.08	84.4	86.61	87.55	46.22
Merged-chr12-82246599-2	chr12	82246090	82247090	+	914.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	L1M4c|LINE|L1	-64759.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	21.17	26.73	30.52	45.88	53.18	41.8	59.15	44.66	43.72
Merged-chr6-48048618-3	chr6	48048165	48049165	+	914.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	-551.0	NM_001081382	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	2.29	2.76	5.55	6.07	6.06	12.06	8.45	1.33	2.5
Merged-chr17-80479824-3	chr17	80479334	80480334	+	914.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 1 of 21)	CpG	619.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	62.35	41.01	38.85	71.52	33.12	40.99	57.03	36.26	31.23
Merged-chr16-87655203-3	chr16	87654697	87655697	+	914.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43757.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	43.48	23.04	19.42	97.16	45.25	58.68	31.69	19.46	16.86
Merged-chr9-120028087-3	chr9	120027604	120028604	+	914.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4506.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	13.73	4.61	7.4	18.89	4.2	7.23	11.62	8.4	2.5
Merged-chr5-92370584-3	chr5	92370094	92371094	+	914.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-7298.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	5.72	11.06	5.55	9.45	9.33	8.84	7.39	8.4	8.74
Merged-chr3-121494211-3	chr3	121493701	121494701	+	914.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145394, intron 10 of 14)	intron (NM_145394, intron 10 of 14)	38143.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	98.39	99.07	82.32	48.58	34.52	28.94	98.23	114.08	44.34
Merged-chr2-12382799-3	chr2	12382293	12383293	+	914.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 8 of 13)	intron (NM_001355537, intron 8 of 13)	36667.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	6.29	6.91	11.1	4.72	7.0	11.25	3.17	6.63	2.5
Merged-chr19-56723985-2	chr19	56723475	56724475	+	914.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007419, exon 1 of 1)	3' UTR (NM_007419, exon 1 of 1)	1603.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	165.32	161.27	102.67	137.64	132.02	151.11	183.78	159.62	109.29
Merged-chr2-166806069-2	chr2	166805556	166806556	+	914.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085495, intron 1 of 38)	MIR3|SINE|MIR	475.0	NM_001085495	99371.0	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	359.82	294.44	193.32	352.88	365.28	246.76	301.01	288.74	163.63
Merged-chr13-120300261-2	chr13	120299784	120300784	+	914.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-108.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	35.47	31.79	27.75	26.31	19.59	21.7	29.57	17.69	28.73
Merged-chr9-113782818-3	chr9	113782323	113783323	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	L1MB8|LINE|L1	-10507.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	60.64	72.34	56.42	65.45	48.52	35.37	38.02	46.87	24.98
Merged-chr14-54900553-3	chr14	54900053	54901053	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6410.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	16.02	13.36	15.72	12.82	12.6	11.25	28.52	17.69	21.86
Merged-chrX-17564951-3	chrX	17564437	17565437	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313746, intron 3 of 4)	HAL1|LINE|L1	7070.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	36.61	47.0	27.75	45.88	28.46	27.33	46.47	36.26	11.87
Merged-chrX-162760866-3	chrX	162760395	162761395	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009031, intron 1 of 11)	CpG	523.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	125.85	114.74	99.89	112.68	112.9	95.65	85.55	72.96	49.34
Merged-chr13-76633908-1	chr13	76633408	76634408	+	914.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	248947.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.72	2.3	0.0	7.42	10.73	0.0	3.17	2.21	2.5
Merged-chr1-134074611-7	chr1	134074122	134075122	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007570)	TTS (NM_007570)	4533.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	15.45	11.06	0.92	18.89	1.4	12.86	14.79	5.31	6.87
Merged-chr4-105643169-1	chr4	105642669	105643669	+	914.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	485822.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	23.45	17.05	5.55	55.33	72.78	69.93	11.62	25.65	6.87
Merged-chr1-173429824-1	chr1	173429324	173430324	+	914.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	9220.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	57.78	53.45	74.0	53.98	29.86	31.35	79.21	94.18	49.96
Merged-chr9-78109893-3	chr9	78109409	78110409	+	914.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081490)	promoter-TSS (NM_001081490)	717.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	107.55	181.55	83.25	87.71	128.76	112.53	102.45	99.49	91.81
Merged-chr15-101367666-3	chr15	101367154	101368154	+	914.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028770, intron 1 of 8)	intron (NM_028770, intron 1 of 8)	-1698.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	14.87	18.43	22.2	18.89	10.73	35.37	15.84	10.17	6.25
Merged-chr17-24533786-3	chr17	24533297	24534297	+	914.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177375)	promoter-TSS (NM_177375)	-50.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	5.15	1.84	5.55	4.72	1.87	6.43	3.17	1.33	6.25
Merged-chr2-71873893-4	chr2	71873395	71874395	+	914.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172665, intron 1 of 10)	intron (NM_172665, intron 1 of 10)	671.0	NM_172665	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	35.47	42.85	28.67	51.95	51.78	21.7	92.94	96.39	41.84
Merged-chr11-62575974-3	chr11	62575476	62576476	+	914.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011706, exon 2 of 16)	5' UTR (NM_011706, exon 2 of 16)	1490.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	143.59	155.75	154.47	118.08	145.55	151.11	120.41	137.96	103.05
Merged-chr7-17063141-2	chr7	17062625	17063625	+	914.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162950)	promoter-TSS (NM_001162950)	-698.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	6.29	6.45	0.0	6.07	1.4	5.63	9.51	3.98	2.5
Merged-chr17-33780694-3	chr17	33780205	33781205	+	914.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020581, intron 2 of 6)	intron (NM_020581, intron 2 of 6)	870.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	67.5	52.99	52.72	95.81	90.5	65.91	15.84	18.57	38.72
Merged-chr17-28762088-3	chr17	28761581	28762581	+	914.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7236.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.72	3.23	3.7	8.1	0.47	0.8	8.45	2.21	2.5
Merged-chr16-10967128-3	chr16	10966625	10967625	+	914.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	25996.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	20.59	20.74	11.1	12.82	15.86	19.29	8.45	13.71	10.62
Merged-chr19-25672340-3	chr19	25671837	25672837	+	914.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045347)	promoter-TSS (NR_045347)	-74.0	NM_145831	226049.0	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.0	1.38	0.0	2.02	0.93	1.61	7.39	3.98	3.75
Merged-chr17-45120004-3	chr17	45119503	45120503	+	914.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357320)	TTS (NM_001357320)	-239118.0	NM_029257	75341.0	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	17.73	29.49	37.92	17.54	23.79	20.9	22.18	11.05	15.61
Merged-chr14-46883543-3	chr14	46883041	46884041	+	914.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037221, intron 1 of 12)	CpG	576.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	195.64	166.34	150.77	178.13	179.61	145.49	161.6	176.87	118.66
Merged-chr10-67113535-3	chr10	67113042	67114042	+	914.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13716.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	100.11	91.24	38.85	113.35	73.71	49.83	76.05	72.52	40.59
Merged-chr7-84605957-3	chr7	84605461	84606461	+	914.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-19.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	6.86	6.45	7.4	8.1	7.93	6.43	3.17	4.42	0.0
Merged-chr13-43512927-2	chr13	43512435	43513435	+	914.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31962.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	5.15	3.69	16.65	12.82	7.0	20.9	5.28	3.98	6.25
Merged-chr13-56609490-3	chr13	56608986	56609986	+	914.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009369)	promoter-TSS (NM_009369)	-100.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	34.32	27.19	18.5	29.69	23.79	25.72	29.57	21.22	19.36
Merged-chr12-25090723-4	chr12	25090251	25091251	+	914.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	5341.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	10.87	4.61	3.7	3.37	2.8	1.61	2.11	1.77	3.75
Merged-chr5-72818738-3	chr5	72818240	72819240	+	914.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	49708.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	26.31	26.26	27.75	41.16	21.46	14.47	19.01	17.69	26.85
Merged-chr8-105172182-3	chr8	105171662	105172662	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161456, intron 2 of 4)	intron (NM_001161456, intron 2 of 4)	1488.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	49.2	60.36	51.8	45.21	39.19	65.11	60.2	58.37	61.83
Merged-chr15-59003867-3	chr15	59003372	59004372	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	70062.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	43.48	34.1	20.35	50.6	50.85	46.62	38.02	50.41	21.23
Merged-chr9-22342997-3	chr9	22342574	22343574	+	914.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 20 of 23)	L1M4|LINE|L1	-12384.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	41.76	42.85	53.65	45.88	45.72	47.42	39.08	52.62	56.21
Merged-chr16-4079584-3	chr16	4079151	4080151	+	914.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1841.0	NM_026508	68015.0	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	44.05	37.78	48.1	22.94	19.13	32.15	35.91	36.26	30.6
Merged-chr13-112003292-2	chr13	112002778	112003778	+	914.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135342.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.72	2.76	0.92	10.8	7.93	6.43	3.17	3.98	3.75
Merged-chr9-124146510-2	chr9	124146003	124147003	+	914.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	24960.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	11.44	24.42	12.95	21.59	21.46	26.53	15.84	27.41	12.49
Merged-chr7-112238024-2	chr7	112237534	112238534	+	914.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	12198.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.58	5.07	15.72	6.07	7.46	8.84	1.06	0.0	5.0
Merged-chrX-75104223-3	chrX	75103751	75104751	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359413, intron 10 of 15)	intron (NM_001359413, intron 10 of 15)	8397.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	21.74	30.87	13.87	22.94	16.33	20.9	19.01	29.63	16.24
Merged-chr12-72462038-3	chr12	72461559	72462559	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030070, intron 10 of 24)	intron (NM_030070, intron 10 of 24)	19810.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	5.15	2.76	3.7	5.4	2.8	3.22	7.39	4.86	3.75
Merged-chr8-85082268-3	chr8	85081763	85082763	+	914.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001493)	TTS (NM_001001493)	-1006.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	178.48	180.17	122.09	104.58	62.51	72.34	98.23	91.97	41.22
Merged-chr4-59164173-3	chr4	59163675	59164675	+	914.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25375.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	5.72	8.75	7.4	6.07	4.2	8.04	7.39	7.52	3.75
Merged-chr7-140955451-3	chr7	140954965	140955965	+	914.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030694, intron 1 of 1)	intron (NM_030694, intron 1 of 1)	496.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	120.13	117.04	139.67	147.09	102.63	180.85	167.93	182.17	156.76
Merged-chr5-43180239-1	chr5	43179739	43180739	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	intron (NR_028417, intron 5 of 7)	-53224.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	10.87	17.05	33.3	25.64	41.99	36.17	27.46	22.99	13.74
Merged-chr9-105053378-3	chr9	105052874	105053874	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_053159, exon 1 of 10)	5' UTR (NM_053159, exon 1 of 10)	106.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	180.2	246.06	246.96	206.46	196.87	225.06	271.44	265.74	136.15
Merged-chr9-31168900-2	chr9	31168400	31169400	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001102456, exon 6 of 17)	exon (NM_001102456, exon 6 of 17)	-37101.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	24.03	22.12	10.17	29.01	35.92	24.92	12.67	14.59	14.36
Merged-chr9-31029820-2	chr9	31029277	31030277	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172765)	promoter-TSS (NM_172765)	-867.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	56.63	88.47	42.55	71.52	76.97	88.42	74.99	90.64	70.57
Merged-chr15-88248333-1	chr15	88247833	88248833	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66541.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.0	2.3	1.85	6.07	3.73	4.82	2.11	1.77	2.5
Merged-chr8-39318921-1	chr8	39318421	39319421	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	Lx6|LINE|L1	20941.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	11.44	12.9	8.32	8.77	8.86	14.47	2.11	3.98	1.87
Merged-chr15-28025221-3	chr15	28024725	28025725	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	CpG	623.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	62.35	35.94	40.7	49.93	32.66	36.17	38.02	19.9	13.74
Merged-chr10-122820987-1	chr10	122820487	122821487	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	141672.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.01	4.61	7.4	4.72	4.67	3.22	3.17	4.86	1.87
Merged-chr18-61384729-1	chr18	61384229	61385229	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	L1MB3|LINE|L1	13171.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	46.91	64.05	71.22	31.04	26.12	40.99	103.51	129.55	54.33
Merged-chr9-57644591-2	chr9	57644129	57645129	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1024.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	61.21	68.2	147.07	61.4	61.58	114.14	156.32	120.71	86.81
Merged-chr12-109507878-3	chr12	109507359	109508359	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33137.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	1.14	1.38	1.85	8.1	4.67	4.82	13.73	9.29	9.99
Merged-chr12-55774529-2	chr12	55774037	55775037	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003719, intron 9 of 39)	Lx7|LINE|L1	46979.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	2.86	1.84	3.7	3.37	2.8	1.61	7.39	4.42	1.25
Merged-chr13-34229077-3	chr13	34228584	34229584	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	66120.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	15.45	10.6	6.47	15.52	5.6	3.22	3.17	4.42	12.49
Merged-chr4-55350562-1	chr4	55350062	55351062	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	CpG	520.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	421.6	427.15	289.51	379.19	416.13	274.9	477.4	460.74	265.42
Merged-chr4-48124509-1	chr4	48124009	48125009	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026343)	promoter-TSS (NM_026343)	-410.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	25.17	25.34	11.1	26.31	19.13	24.11	20.07	15.03	7.49
Merged-chr7-97741220-2	chr7	97740720	97741720	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2973.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	8.58	4.61	7.4	4.72	2.33	6.43	0.0	3.54	3.75
Merged-chr12-59579866-1	chr12	59579366	59580366	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-360383.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.43	3.23	1.85	2.02	3.73	0.0	1.06	3.54	5.62
Merged-chr3-121545669-3	chr3	121545173	121546173	+	914.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13329.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	18.88	5.53	0.0	16.87	7.93	17.68	17.96	15.92	5.0
Merged-chr3-104639023-1	chr3	104638523	104639523	+	914.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	CpG	359.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	85.81	38.25	34.22	78.27	51.32	32.96	28.52	15.48	4.37
Merged-chr10-28516261-1	chr10	28515761	28516761	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 13 of 30)	intron (NM_001359356, intron 13 of 30)	-152099.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	6.29	5.99	1.85	6.07	1.4	4.82	4.22	5.31	0.0
Merged-chr15-80707193-2	chr15	80706697	80707697	+	914.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4116.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	17.73	20.27	7.4	12.14	14.46	11.25	17.96	15.48	11.87
Merged-chr10-43757316-3	chr10	43756809	43757809	+	913.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	11151.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	14.87	9.22	3.7	13.49	12.13	4.82	13.73	20.78	3.75
Merged-chr5-138686085-2	chr5	138685574	138686574	+	913.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63215.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	9.15	5.99	0.0	4.72	3.27	7.23	15.84	3.98	9.37
Merged-chr3-41618583-3	chr3	41618081	41619081	+	913.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53701.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	10.87	9.22	18.5	19.57	12.13	21.7	9.51	6.63	9.37
Merged-chr10-91210200-3	chr10	91209675	91210675	+	913.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	MTD|LTR|ERVL-MaLR	10444.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	28.6	44.24	47.17	22.94	34.99	47.42	33.8	35.82	29.35
Merged-chr3-88664283-3	chr3	88663789	88664789	+	913.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-11147.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	2.86	2.76	5.55	28.34	13.06	16.08	7.39	4.86	2.5
Merged-chr1-159232981-4	chr1	159232510	159233510	+	913.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	810.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	116.7	132.25	99.89	88.39	96.57	123.78	99.28	128.23	95.55
Merged-chr8-85500684-2	chr8	85500192	85501192	+	913.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	intron (NM_173866, intron 2 of 11)	8075.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	3.43	4.15	7.4	20.92	12.13	9.65	12.67	8.84	9.99
Merged-chr8-108749205-2	chr8	108748709	108749709	+	913.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	34565.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	24.6	27.19	24.97	20.92	28.46	39.39	25.35	18.13	38.1
Merged-chr15-6574819-3	chr15	6574305	6575305	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5042.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	33.75	45.62	39.77	23.62	32.66	40.99	68.65	58.81	39.97
Merged-chr16-30502650-3	chr16	30502090	30503090	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47988.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	18.31	9.22	5.55	17.54	18.66	3.22	14.79	15.92	1.25
Merged-chr4-150117540-1	chr4	150117040	150118040	+	913.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1804.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.57	0.46	3.7	2.02	2.33	1.61	22.18	18.13	14.36
Merged-chr9-90253738-3	chr9	90253233	90254233	+	913.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	17036.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	47.48	54.83	49.95	44.53	41.99	63.5	64.43	53.5	40.59
Merged-chr14-76216628-3	chr14	76216135	76217135	+	913.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34827.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	70.36	47.0	4.62	50.6	24.26	6.43	54.92	58.37	16.24
Merged-chrX-94542147-3	chrX	94541637	94542637	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019791)	promoter-TSS (NM_019791)	-63.0	NM_019791	94275.0	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	2.86	5.07	3.7	6.75	8.4	15.27	7.39	5.75	2.5
Merged-chr1-156534128-3	chr1	156533601	156534601	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24686.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	89.24	96.76	87.87	72.87	50.38	45.82	26.4	28.3	21.86
Merged-chr10-62430636-3	chr10	62430141	62431141	+	913.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359806, intron 13 of 14)	intron (NM_001359806, intron 13 of 14)	-8184.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	7.44	9.68	5.55	13.49	12.6	6.43	16.9	15.92	6.87
Merged-chr17-5493953-3	chr17	5493439	5494439	+	913.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1339.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	134.43	165.42	91.57	151.81	127.36	158.35	201.73	182.62	92.43
Merged-chr8-106039774-3	chr8	106039290	106040290	+	913.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301176, intron 6 of 14)	intron (NM_001301176, intron 6 of 14)	-19813.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	5.15	5.53	4.62	6.75	5.13	4.82	3.17	1.33	6.87
Merged-chr19-47900722-2	chr19	47900230	47901230	+	913.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	18569.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	5.72	4.15	9.25	7.42	7.46	12.86	14.79	5.31	12.49
Merged-chr10-80033339-3	chr10	80032830	80033830	+	913.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	6329.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	34.32	25.8	37.92	80.29	59.25	61.09	57.03	41.12	33.1
Merged-chr16-23988041-3	chr16	23987516	23988516	+	913.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009744, intron 1 of 9)	CpG	836.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	178.48	192.61	140.59	143.04	149.28	204.97	164.76	149.45	117.41
Merged-chr17-83668130-3	chr17	83667644	83668644	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-36249.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	14.3	14.75	13.87	17.54	17.73	12.06	22.18	21.22	20.61
Merged-chr11-72779562-3	chr11	72779062	72780062	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024926, intron 3 of 3)	intron (NM_001024926, intron 3 of 3)	16277.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	13.73	6.91	7.4	14.17	5.13	12.06	16.9	19.01	5.0
Merged-chr1-128044365-3	chr1	128043876	128044876	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 3 of 20)	intron (NM_001285945, intron 3 of 20)	58095.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.58	2.76	1.85	6.07	7.46	9.65	9.51	8.4	9.99
Merged-chr1-120055652-3	chr1	120055165	120056165	+	913.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 11 of 13)	intron (NM_001012322, intron 11 of 13)	18115.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	16.59	16.59	17.57	28.34	12.6	12.86	39.08	20.78	16.86
Merged-chr19-47216936-2	chr19	47216442	47217442	+	913.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021360, intron 1 of 5)	ID_B1|SINE|B4	-11901.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	8.01	2.76	11.1	8.1	2.8	2.41	2.11	0.44	3.75
Merged-chr13-21935514-2	chr13	21935011	21936011	+	913.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	-9583.0	NM_183014	193452.0	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	4.58	5.53	5.55	4.72	7.0	3.22	4.22	4.86	1.87
Merged-chr15-53416455-3	chr15	53415938	53416938	+	913.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-70255.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	145.87	124.87	63.82	90.41	77.91	68.32	79.21	104.35	63.08
Merged-chr11-97309530-3	chr11	97309018	97310018	+	913.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6198.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	41.19	29.49	10.17	132.92	97.97	105.3	32.74	24.76	6.87
Merged-chr13-28824178-2	chr13	28823678	28824678	+	913.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	61244.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	4.0	1.84	1.85	14.84	6.06	6.43	3.17	2.65	8.74
Merged-chr3-41405021-3	chr3	41404518	41405518	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88181.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	8.58	5.53	8.32	9.45	5.13	8.84	5.28	2.65	2.5
Merged-chr9-118762235-3	chr9	118761735	118762735	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	50543.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	55.49	43.77	29.6	65.45	66.71	45.82	92.94	69.42	39.97
Merged-chr6-148609150-3	chr6	148608639	148609639	+	913.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045867, exon 3 of 3)	non-coding (NR_045867, exon 3 of 3)	5170.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	13.16	4.61	1.85	5.4	7.0	1.61	5.28	6.63	1.25
Merged-chr17-5025570-3	chr17	5025081	5026081	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	30507.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	21.17	15.67	11.1	8.1	13.06	9.65	11.62	13.71	13.74
Merged-chr3-146158205-3	chr3	146157699	146158699	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	intron (NM_001005846, intron 1 of 13)	8025.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	61.21	93.08	44.4	66.8	58.78	52.25	68.65	84.01	51.84
Merged-chr11-115653692-3	chr11	115653183	115654183	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 3 of 5)	intron (NM_001313936, intron 3 of 5)	-25388.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	179.05	171.41	109.14	236.15	207.13	137.45	155.26	188.36	98.05
Merged-chr19-6974903-3	chr19	6974404	6975404	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008889)	promoter-TSS (NM_008889)	-144.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	25.74	17.97	39.77	30.36	26.12	37.78	27.46	14.15	25.61
Merged-chr15-76879180-3	chr15	76878681	76879681	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358816)	promoter-TSS (NM_001358816)	-72.0	NM_145916	223669.0	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	3.43	4.15	3.7	6.75	5.13	5.63	0.0	2.65	0.0
Merged-chr10-37210455-3	chr10	37209940	37210940	+	913.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-71514.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	47.48	53.45	48.1	39.81	37.79	52.25	39.08	39.35	29.98
Merged-chr17-26955765-1	chr17	26955265	26956265	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281491, intron 7 of 18)	intron (NM_001281491, intron 7 of 18)	-7646.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	11.44	6.91	4.62	16.19	6.06	6.43	6.34	4.42	9.37
Merged-chr11-113544375-1	chr11	113543875	113544875	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 3 of 9)	intron (NM_027216, intron 3 of 9)	21440.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	5.15	2.76	5.55	4.05	2.8	4.02	3.17	2.21	1.25
Merged-chr15-66969793-3	chr15	66969275	66970275	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-134.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	9.72	6.91	5.55	16.19	7.46	6.43	11.62	5.31	1.87
Merged-chr4-139203548-3	chr4	139203056	139204056	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	ID_B1|SINE|B4	9445.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	57.21	64.97	70.3	52.63	31.72	45.82	89.78	74.73	49.96
Merged-chr15-39608897-4	chr15	39608367	39609367	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-50644.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	13.73	11.98	20.35	24.96	34.52	30.54	30.63	20.78	28.1
Merged-chr19-33119112-2	chr19	33118607	33119607	+	913.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B1|LTR|ERVL	-38005.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	8.58	9.68	12.02	19.57	9.33	11.25	8.45	11.94	12.49
Merged-chr8-68206922-3	chr8	68206428	68207428	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69600.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	101.83	139.16	36.07	75.57	66.71	44.21	50.7	55.27	39.35
Merged-chrX-41805762-3	chrX	41805249	41806249	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033422, intron 36 of 38)	intron (NM_001033422, intron 36 of 38)	106152.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	21.74	13.82	12.02	12.82	8.4	8.04	23.24	12.82	6.87
Merged-chr9-113932229-3	chr9	113931702	113932702	+	913.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013699, intron 2 of 15)	intron (NM_013699, intron 2 of 15)	1268.0	NM_013699	22221.0	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	66.36	58.52	69.37	74.22	56.91	66.71	84.49	73.4	49.34
Merged-chr9-4443099-3	chr9	4442619	4443619	+	913.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113180, intron 14 of 16)	B2_Mm2|SINE|B2	66567.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	2.29	2.76	1.85	2.02	7.0	0.0	2.11	3.54	1.25
Merged-chr19-4138123-3	chr19	4137632	4138632	+	913.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144532, intron 3 of 5)	MTD|LTR|ERVL-MaLR	1477.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	37.18	22.58	47.17	27.66	16.79	29.74	29.57	21.22	23.73
Merged-chr3-123329401-3	chr3	123328901	123329901	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 9 of 22)	intron (NM_027135, intron 9 of 22)	56589.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	10.87	14.75	14.8	16.19	17.26	16.88	42.25	36.26	24.98
Merged-chr6-13875165-3	chr6	13874682	13875682	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045995, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	3613.0	NR_045995	76311.0	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	14.3	17.05	12.02	10.8	5.13	14.47	12.67	8.84	8.12
Merged-chr14-17714573-3	chr14	17714018	17715018	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	53558.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.29	13.82	6.47	15.52	18.66	14.47	17.96	11.5	7.49
Merged-chr7-45082680-3	chr7	45082143	45083143	+	913.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026555)	TTS (NM_026555)	9570.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	65.79	52.07	84.17	82.32	69.51	118.16	100.34	95.51	56.21
Merged-chr19-7418068-3	chr19	7417582	7418582	+	913.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175381, intron 1 of 4)	CpG	457.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	7.44	2.3	4.62	6.75	1.4	6.43	2.11	2.21	1.25
Merged-chr4-59040813-2	chr4	59040334	59041334	+	913.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025277, intron 2 of 2)	intron (NM_025277, intron 2 of 2)	5678.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	53.2	49.3	38.85	52.63	31.26	24.11	2.11	0.88	2.5
Merged-chr15-77805868-3	chr15	77805448	77806448	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	36227.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	62.93	22.58	47.17	33.06	35.92	36.17	33.8	27.86	39.35
Merged-chr10-111108879-3	chr10	111108334	111109334	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55968.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	8.01	4.15	0.0	0.0	3.27	1.61	2.11	0.88	2.5
Merged-chr9-40415218-3	chr9	40414711	40415711	+	913.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	intron (NM_001357617, intron 1 of 20)	-38794.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	26.31	26.26	28.67	24.96	29.86	38.58	61.26	67.65	25.61
Merged-chr15-27466500-4	chr15	27465978	27466978	+	913.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020332)	promoter-TSS (NM_020332)	-199.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	9.72	0.92	0.0	10.12	6.53	1.61	5.28	0.44	1.25
Merged-chr15-57980886-3	chr15	57980385	57981385	+	913.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5018.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	9.15	4.15	7.4	8.77	7.0	4.82	6.34	3.98	2.5
Merged-chr10-95357929-3	chr10	95357438	95358438	+	913.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045337, intron 1 of 2)	ORR1F|LTR|ERVL-MaLR	21662.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	25.74	16.59	11.1	18.89	12.13	28.94	62.31	53.5	36.85
Merged-chr4-43372365-1	chr4	43371865	43372865	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 27 of 28)	intron (NM_177195, intron 27 of 28)	-9617.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.57	4.15	1.85	7.42	2.33	5.63	2.11	0.88	0.0
Merged-chr6-31224667-1	chr6	31224167	31225167	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	L2c|LINE|L2	4316.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.0	4.61	1.85	13.49	6.53	7.23	4.22	5.75	6.25
Merged-chr19-41367368-3	chr19	41366862	41367862	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	17708.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	48.05	58.98	42.55	35.09	45.72	38.58	79.21	53.5	39.97
Merged-chr18-65070776-3	chr18	65070285	65071285	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	47258.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.72	4.61	1.85	5.4	4.2	7.23	8.45	2.21	2.5
Merged-chr5-93266342-3	chr5	93265832	93266832	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1241.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	103.54	136.85	128.57	88.39	105.43	102.08	132.02	152.99	106.17
Merged-chr2-22795223-3	chr2	22794735	22795735	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	20908.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	80.66	72.34	41.62	68.15	50.85	44.21	76.05	96.83	33.72
Merged-chr8-33673835-3	chr8	33673340	33674340	+	913.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 4 of 12)	intron (NM_010344, intron 4 of 12)	20602.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	26.31	15.67	12.95	28.34	32.66	40.99	183.78	201.63	80.56
Merged-chr10-96263847-1	chr10	96263347	96264347	+	913.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37640.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	14.3	4.61	5.55	15.52	5.6	11.25	14.79	5.75	2.5
Merged-chr14-40931326-3	chr14	40930831	40931831	+	913.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	16878.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	50.91	56.68	45.32	64.77	63.45	43.4	43.3	31.84	18.11
Merged-chr14-63437406-5	chr14	63436908	63437908	+	913.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	1014.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	321.49	271.86	177.59	272.59	206.66	208.18	299.96	277.24	167.37
Merged-chr4-134917229-3	chr4	134916734	134917734	+	913.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2318.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	37.18	25.8	43.47	32.39	19.13	53.05	43.3	36.7	29.98
Merged-chr2-103655982-5	chr2	103655463	103656463	+	913.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	89653.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	41.19	40.09	39.77	37.11	20.99	20.9	24.29	22.99	18.11
Merged-chr2-166682607-2	chr2	166682096	166683096	+	913.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	31236.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	65.79	40.55	25.9	80.29	43.39	51.44	81.33	63.67	24.36
Merged-chrX-93632149-4	chrX	93631539	93632539	+	913.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008892, intron 1 of 36)	CpG	116.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	62.35	58.06	51.8	60.05	46.18	45.01	60.2	52.62	38.72
Merged-chr5-150233596-2	chr5	150233078	150234078	+	913.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26352.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.58	3.69	5.55	7.42	4.67	8.04	11.62	9.29	15.61
Merged-chr19-24971499-3	chr19	24971002	24972002	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9886.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	6.29	9.68	5.55	22.27	17.73	15.27	12.67	11.5	13.12
Merged-chr2-130293699-3	chr2	130293208	130294208	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2231.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	11.44	7.37	7.4	7.42	3.27	11.25	5.28	3.1	5.0
Merged-chrX-101452617-3	chrX	101452098	101453098	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013712, intron 9 of 10)	intron (NM_013712, intron 9 of 10)	3489.0	NM_013712	26549.0	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	18.88	22.12	18.5	5.4	4.67	4.82	23.24	15.92	11.24
Merged-chr9-22308957-3	chr9	22308449	22309449	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1311.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	36.04	44.24	33.3	46.56	34.52	26.53	72.88	87.11	44.34
Merged-chr11-120352876-3	chr11	120352437	120353437	+	913.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4259.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	284.88	196.29	203.49	234.8	180.54	244.35	171.1	180.4	136.15
Merged-chr9-57561953-3	chr9	57561441	57562441	+	913.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	997.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	168.18	158.51	104.52	153.84	106.83	101.28	133.08	165.81	73.69
Merged-chr10-121376052-3	chr10	121375550	121376550	+	913.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 3 of 13)	intron (NM_029364, intron 3 of 13)	10960.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	206.51	166.34	93.42	233.45	172.14	141.47	207.01	198.09	120.53
Merged-chr15-25412479-3	chr15	25411977	25412977	+	913.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	CpG	1287.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	26.31	25.8	18.5	62.75	59.71	44.21	82.38	64.11	23.11
Merged-chr3-89436943-3	chr3	89436388	89437388	+	913.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	184.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	6.29	10.6	12.95	9.45	10.73	9.65	6.34	9.73	14.36
Merged-chr12-78206261-4	chr12	78205739	78206739	+	913.1785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20416.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	11.44	18.43	33.3	13.49	17.73	14.47	28.52	26.09	13.12
Merged-chr8-126885738-3	chr8	126885246	126886246	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	36726.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	14.87	15.67	7.4	24.96	16.79	26.53	42.25	45.99	20.61
Merged-chr1-37318121-2	chr1	37317618	37318618	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	18280.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	27.46	23.5	23.12	15.52	10.26	12.06	15.84	7.96	5.62
Merged-chr6-72394584-3	chr6	72394076	72395076	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3909.0	NM_016794	22320.0	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	115.55	138.7	132.27	93.79	81.17	122.18	113.01	163.6	118.66
Merged-chr10-30712679-3	chr10	30712180	30713180	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-56813.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	16.59	8.29	10.17	13.49	2.8	7.23	12.67	3.98	9.37
Merged-chr9-61267419-3	chr9	61266910	61267910	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	26399.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	13.16	6.91	6.47	9.45	7.0	14.47	16.9	4.86	4.37
Merged-chr11-68475443-3	chr11	68474947	68475947	+	913.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177320, exon 3 of 19)	exon (NM_177320, exon 3 of 19)	-27572.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	112.69	99.53	74.92	102.56	72.31	105.3	66.54	57.04	48.09
Merged-chr5-53594540-1	chr5	53594040	53595040	+	913.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	intron (NM_001359152, intron 1 of 9)	4054.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	46.34	47.0	12.95	39.13	25.19	24.92	36.97	44.66	21.86
Merged-chr8-86862455-5	chr8	86861956	86862956	+	913.1199949999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	22802.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	62.35	66.81	65.67	60.72	50.85	54.66	62.31	45.99	61.83
Merged-chr12-79646778-3	chr12	79646287	79647287	+	913.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	277946.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	46.34	34.56	22.2	52.63	34.52	23.31	30.63	20.34	13.74
Merged-chr5-29574470-3	chr5	29573975	29574975	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133907, intron 1 of 22)	RLTR45|LTR|ERVK	5233.0	NM_133907	100763.0	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	24.6	34.1	22.2	25.64	21.46	39.39	17.96	15.48	34.97
Merged-chr11-116195461-3	chr11	116194984	116195984	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-3371.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	70.36	37.32	38.85	52.63	31.26	54.66	33.8	27.86	27.48
Merged-chr11-81950290-3	chr11	81949777	81950777	+	913.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	18119.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	8.58	5.53	2.77	2.7	0.93	1.61	6.34	1.33	3.75
Merged-chr19-46699361-3	chr19	46698855	46699855	+	913.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	-8088.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	36.61	18.89	24.05	29.69	23.79	33.76	24.29	17.24	26.85
Merged-chr15-76350632-3	chr15	76350117	76351117	+	913.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164608)	promoter-TSS (NM_001164608)	493.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	201.36	205.51	192.39	138.32	157.68	173.62	204.9	205.17	118.04
Merged-chr7-96977418-3	chr7	96976931	96977931	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	25904.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	54.35	52.53	38.85	63.42	62.98	40.99	59.15	64.56	23.73
Merged-chr15-72838415-3	chr15	72837903	72838903	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-28079.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	36.04	36.86	50.87	37.78	27.99	36.97	91.89	83.13	31.23
Merged-chr18-75171459-3	chr18	75170978	75171978	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	125839.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	18.31	17.51	22.2	21.59	14.46	17.68	10.56	13.71	8.74
Merged-chr7-89337991-3	chr7	89337483	89338483	+	913.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	804.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	267.72	256.2	163.72	223.33	260.31	208.98	416.14	390.88	154.26
Merged-chr3-60538723-3	chr3	60538222	60539222	+	913.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	37543.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	50.91	44.24	10.17	24.96	15.86	13.66	43.3	45.99	23.73
Merged-chr2-69077437-3	chr2	69076926	69077926	+	913.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 8 of 10)	intron (NM_001347161, intron 8 of 10)	-58374.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	8.58	8.29	9.25	9.45	5.13	4.02	11.62	7.52	2.5
Merged-chr17-48322523-3	chr17	48322005	48323005	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177083, intron 5 of 5)	intron (NM_177083, intron 5 of 5)	6343.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	44.05	56.68	44.4	45.88	55.98	66.71	74.99	72.96	54.96
Merged-chrX-13469869-1	chrX	13469369	13470369	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	intron (NM_173415, intron 2 of 2)	2197.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	47.48	70.04	35.15	57.35	48.52	52.25	49.64	51.73	38.1
Merged-chr9-13584674-1	chr9	13584174	13585174	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35315.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	25.74	23.5	14.8	40.48	28.46	29.74	22.18	9.73	10.62
Merged-chr16-75894416-1	chr16	75893916	75894916	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	14850.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	46.91	36.4	17.57	5.4	3.73	6.43	6.34	3.98	1.87
Merged-chr16-43106442-1	chr16	43105942	43106942	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	MLT2B4|LTR|ERVL	-140842.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	4.0	5.99	1.85	3.37	3.27	8.04	4.22	3.54	1.25
Merged-chrX-121326820-2	chrX	121326313	121327313	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-1013587.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	6.86	6.45	4.62	8.77	3.73	9.65	0.0	0.0	2.5
Merged-chr14-105897354-3	chr14	105896873	105897873	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011897)	promoter-TSS (NM_011897)	-554.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	33.18	14.75	35.15	33.74	10.73	18.49	8.45	4.86	3.12
Merged-chr2-79628810-1	chr2	79628310	79629310	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6615.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	8.58	9.22	12.95	14.84	11.66	6.43	3.17	1.33	1.25
Merged-chr10-95148812-3	chr10	95148311	95149311	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-2986.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	25.17	17.51	12.95	28.34	20.99	14.47	19.01	25.2	18.11
Merged-chr7-28527816-1	chr7	28527316	28528316	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4980.0	NM_177396	338374.0	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	14.87	12.9	4.62	19.57	16.79	14.47	16.9	11.5	11.87
Merged-chr12-3345331-1	chr12	3344831	3345831	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-19801.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	77.23	76.95	121.17	85.01	65.78	106.9	117.24	113.64	76.19
Merged-chrX-13478550-1	chrX	13478050	13479050	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	MLT1A0|LTR|ERVL-MaLR	10878.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	4.0	10.14	10.17	7.42	7.0	29.74	7.39	2.21	6.25
Merged-chr18-62037758-3	chr18	62037257	62038257	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84682.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	33.75	15.21	6.47	58.7	24.26	23.31	27.46	11.94	7.49
Merged-chr17-45591878-1	chr17	45591378	45592378	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	515.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	26.31	27.65	56.42	32.39	29.86	45.01	32.74	37.58	25.61
Merged-chr4-55645091-2	chr4	55644580	55645580	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-112605.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.58	3.23	1.85	3.37	1.87	10.45	6.34	2.21	1.25
Merged-chr11-80148301-3	chr11	80147653	80148653	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6000.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	38.33	36.86	36.07	33.74	32.19	38.58	35.91	61.02	41.22
Merged-chr12-79002654-1	chr12	79002154	79003154	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178745, intron 1 of 2)	Lx9|LINE|L1	4623.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.86	2.76	4.62	4.72	5.13	4.82	4.22	3.98	2.5
Merged-chr2-166301413-1	chr2	166300913	166301913	+	913.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27505.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	5.72	0.92	0.0	6.07	3.27	3.22	3.17	3.1	8.74
Merged-chr9-90303345-3	chr9	90302841	90303841	+	913.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-32572.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	10.87	25.8	19.42	15.52	16.33	19.29	31.69	16.8	20.61
Merged-chr3-78958966-2	chr3	78958466	78959466	+	913.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	185921.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	5.72	3.69	2.77	4.05	5.13	1.61	4.22	3.54	1.25
Merged-chr11-120231487-3	chr11	120230987	120231987	+	912.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151480, intron 1 of 1)	CpG	130.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	21.74	11.52	7.4	6.07	7.0	1.61	36.97	25.65	16.24
Merged-chr10-59964850-4	chr10	59964350	59965350	+	912.964294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13080.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	9.15	7.37	28.67	28.34	13.53	17.68	32.74	17.24	13.12
Merged-chr5-30622504-3	chr5	30622021	30623021	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010608, exon 2 of 2)	exon (NM_010608, exon 2 of 2)	-25415.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	6.86	1.84	4.62	4.05	6.06	3.22	6.34	1.33	2.5
Merged-chr5-30775219-3	chr5	30774735	30775735	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023047, intron 2 of 12)	(CCCCAG)n|Simple_repeat|Simple_repeat	-39406.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.58	4.15	12.95	4.72	1.87	0.0	4.22	1.77	1.87
Merged-chr13-52533858-3	chr13	52533352	52534352	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3016.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	21.74	14.75	20.35	24.29	10.26	11.25	4.22	8.84	6.25
Merged-chr15-11407566-3	chr15	11407058	11408058	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	4.0	4.15	9.25	4.05	3.73	4.82	6.34	3.1	1.25
Merged-chr5-3301304-3	chr5	3300811	3301811	+	912.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42582.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	15.45	12.44	1.85	45.21	39.19	37.78	17.96	10.61	5.0
Merged-chr17-83563953-3	chr17	83563462	83564462	+	912.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49629.0	NM_001159529	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	9.72	12.9	5.55	11.47	10.26	9.65	20.07	20.34	5.0
Merged-chr9-66158219-3	chr9	66157717	66158717	+	912.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010019)	promoter-TSS (NM_010019)	-9.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.43	0.46	3.7	7.42	0.93	1.61	8.45	1.33	1.25
Merged-chr2-34741963-3	chr2	34741452	34742452	+	912.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	13280.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	22.31	34.1	16.65	33.74	30.79	48.23	20.07	30.95	20.61
Merged-chr4-107989140-3	chr4	107988636	107989636	+	912.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146255, intron 2 of 10)	intron (NM_146255, intron 2 of 10)	20802.0	NM_146255	242607.0	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	6.29	4.15	4.62	10.12	1.87	10.45	10.56	6.19	3.12
Merged-chr19-41982150-3	chr19	41981678	41982678	+	912.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	CpG	415.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	191.64	183.39	169.27	156.53	153.48	159.95	224.97	193.23	138.65
Merged-chr3-21634999-3	chr3	21634516	21635516	+	912.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57E2|LTR|ERV1	-441636.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.86	11.06	4.62	12.14	6.06	12.06	10.56	9.29	14.99
Merged-chr17-35189391-3	chr17	35188917	35189917	+	912.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010734)	promoter-TSS (NM_010734)	-977.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	84.66	59.9	95.27	84.34	55.05	118.96	63.37	83.57	78.69
Merged-chrX-48410290-3	chrX	48409777	48410777	+	912.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019680)	TTS (NM_019680)	52855.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	2.29	1.84	10.17	4.05	5.6	8.04	4.22	2.65	4.37
Merged-chr10-28414221-1	chr10	28413721	28414721	+	912.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	intron (NM_001359356, intron 7 of 30)	-254139.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	10.3	4.15	5.55	8.77	9.8	4.82	7.39	5.31	3.75
Merged-chr1-88655337-3	chr1	88654839	88655839	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46852.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	50.91	55.29	58.27	51.28	38.25	42.6	28.52	13.71	23.11
Merged-chr3-31097254-3	chr3	31096741	31097741	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	2183.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	135.0	140.08	93.42	121.45	125.02	126.19	192.23	221.53	83.06
Merged-chr10-68472966-3	chr10	68472426	68473426	+	912.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	68949.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.15	7.37	1.85	14.84	13.06	12.86	11.62	13.71	7.49
Merged-chr17-57250040-1	chr17	57249540	57250540	+	912.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242390, intron 1 of 14)	intron (NM_001242390, intron 1 of 14)	589.0	NM_001242389	106628.0	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	20.59	10.6	11.1	24.29	10.26	24.92	21.12	6.63	7.49
Merged-chr6-50163077-4	chr6	50162521	50163521	+	912.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361248, intron 5 of 13)	intron (NM_001361248, intron 5 of 13)	52161.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	30.89	31.33	8.32	41.83	32.19	41.8	54.92	32.28	22.48
Merged-chr15-6029433-3	chr15	6028916	6029916	+	912.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155428, intron 2 of 2)	intron (NR_155428, intron 2 of 2)	15288.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	14.87	11.98	11.1	16.87	9.8	12.06	19.01	7.07	8.74
Merged-chr7-45083228-3	chr7	45082729	45083729	+	912.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026555, exon 7 of 7)	3' UTR (NM_026555, exon 7 of 7)	8984.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	76.08	52.99	62.9	103.91	89.57	122.98	106.67	100.37	69.95
Merged-chr11-75163728-3	chr11	75163189	75164189	+	912.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001098203)	TTS (NM_001098203)	4463.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	27.46	23.96	35.15	43.86	18.19	53.05	32.74	16.36	26.85
Merged-chr5-146757491-3	chr5	146756989	146757989	+	912.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	37467.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	17.73	17.51	24.05	18.22	13.53	40.19	16.9	30.51	23.73
Merged-chr18-17360356-3	chr18	17359872	17360872	+	912.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124890.0	NR_033607	664619.0	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	10.87	6.45	7.4	14.17	11.2	14.47	8.45	4.86	0.62
Merged-chr18-53059266-3	chr18	53058757	53059757	+	912.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117035.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	1.72	5.99	1.85	4.05	5.13	4.82	4.22	4.42	2.5
Merged-chr9-110452714-3	chr9	110452217	110453217	+	912.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 2 of 9)	intron (NM_001360306, intron 2 of 9)	23977.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	26.31	33.18	49.02	24.96	31.72	24.92	27.46	29.63	16.24
Merged-chr10-57637203-3	chr10	57636712	57637712	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5231.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	26.89	26.26	15.72	18.89	17.73	22.51	23.24	17.24	8.12
Merged-chr6-136551117-1	chr6	136550617	136551617	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32266.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	14.87	19.81	11.1	24.29	23.33	24.92	19.01	14.15	23.11
Merged-chr6-30114308-1	chr6	30113808	30114808	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361695, intron 6 of 11)	intron (NM_001361695, intron 6 of 11)	27143.0	NM_001361693	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.57	0.92	1.85	9.45	3.73	10.45	3.17	1.33	0.0
Merged-chr18-31804497-1	chr18	31803997	31804997	+	912.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	CpG	440.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	208.23	221.18	122.09	182.17	264.04	167.19	154.2	150.78	93.68
Merged-chr13-9181238-3	chr13	9180729	9181729	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87348.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	41.76	23.96	18.5	42.51	33.59	16.88	51.75	36.7	12.49
Merged-chrY-90807774-1	chrY	90807274	90808274	+	912.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	22332.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	5.15	3.23	5.55	4.72	2.8	1.61	6.34	12.38	32.48
Merged-chr8-121111353-3	chr8	121110857	121111857	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2978.0	NM_001166482	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	17.16	20.74	11.1	16.19	14.46	14.47	12.67	8.4	16.86
Merged-chr4-65565663-3	chr4	65565163	65566163	+	912.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-39323.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	1.14	4.61	0.0	4.05	3.73	1.61	3.17	6.19	0.0
Merged-chr4-39611247-2	chr4	39610753	39611753	+	912.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	160960.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	10.87	10.14	13.87	10.12	9.33	13.66	19.01	11.94	14.99
Merged-chr6-83418270-3	chr6	83417757	83418757	+	912.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-17155.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	26.31	28.57	46.25	55.33	34.52	44.21	47.53	50.41	31.23
Merged-chr19-11055846-3	chr19	11055356	11056356	+	912.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-5290.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	76.66	111.51	50.87	47.9	64.84	47.42	82.38	112.31	58.71
Merged-chr12-102646269-3	chr12	102645790	102646790	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	38730.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	82.95	73.73	107.29	59.38	38.25	72.34	65.48	74.28	49.34
Merged-chr1-155814826-2	chr1	155814325	155815325	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1926.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	13.73	13.82	12.95	33.06	26.12	49.83	0.0	0.44	2.5
Merged-chr19-47464218-5	chr19	47463617	47464617	+	912.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164717, exon 1 of 14)	exon (NM_001164717, exon 1 of 14)	294.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	132.14	57.14	53.65	193.64	134.35	93.24	121.46	54.83	35.6
Merged-chr3-81037485-3	chr3	81036984	81037984	+	912.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019971, exon 1 of 6)	exon (NM_019971, exon 1 of 6)	1068.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	156.17	129.48	132.27	207.14	174.94	150.31	177.44	202.95	67.45
Merged-chr14-33320325-3	chr14	33319814	33320814	+	912.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	CpG	90710.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	14.3	7.37	16.65	18.22	7.0	10.45	9.51	4.42	9.99
Merged-chr11-98948082-3	chr11	98947580	98948580	+	912.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8369.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	106.97	73.26	76.77	96.48	69.98	62.7	98.23	80.92	46.84
Merged-chr11-34056683-3	chr11	34056165	34057165	+	912.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	9737.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	51.48	68.2	42.55	40.48	28.46	45.82	72.88	56.16	46.84
Merged-chr2-155563110-3	chr2	155562618	155563618	+	912.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008180)	TTS (NM_008180)	-6188.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	13.73	11.98	5.55	21.59	13.06	18.49	24.29	29.18	13.74
Merged-chr5-134231645-3	chr5	134231144	134232144	+	912.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2019.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	95.53	135.47	110.07	116.05	126.42	134.23	127.8	137.07	91.18
Merged-chr8-108631299-1	chr8	108630799	108631799	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-46622.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.15	4.15	11.1	4.72	7.0	1.61	5.28	3.1	2.5
Merged-chr12-85496976-3	chr12	85496476	85497476	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23086.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	84.09	43.77	84.17	89.06	50.38	53.85	68.65	50.41	21.23
Merged-chr8-22477378-1	chr8	22476878	22477878	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-499.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	191.64	157.59	192.39	211.19	175.41	147.9	197.51	198.53	98.05
Merged-chr8-40491577-3	chr8	40491076	40492076	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011135)	TTS (NM_011135)	18903.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	38.33	39.63	49.02	29.01	33.12	38.58	15.84	22.11	14.99
Merged-chr2-21139425-2	chr2	21138924	21139924	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65941.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	1.72	1.38	1.85	5.4	2.33	3.22	3.17	1.33	0.0
Merged-chr9-63985311-2	chr9	63984810	63985810	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	36749.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	8.01	7.83	6.47	21.59	11.2	10.45	19.01	6.63	5.0
Merged-chr16-95810609-3	chr16	95810112	95811112	+	912.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88101.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.29	5.53	4.62	6.75	2.8	8.04	4.22	2.65	3.75
Merged-chr3-103912928-1	chr3	103912428	103913428	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008979)	TTS (NM_008979)	-1192.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	18.31	11.52	18.5	8.77	8.86	8.04	15.84	11.5	5.0
Merged-chr5-20816027-1	chr5	20815527	20816527	+	912.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	66097.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	8.58	9.68	7.4	8.1	9.33	3.22	12.67	5.31	9.99
Merged-chr7-97361701-3	chr7	97361254	97362254	+	912.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-9863.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	5.72	3.69	1.85	5.4	1.87	1.61	7.39	2.65	0.62
Merged-chr10-40499463-3	chr10	40498982	40499982	+	912.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70880.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	34.32	56.22	35.15	70.85	82.57	59.48	55.98	49.52	26.85
Merged-chr9-5300210-3	chr9	5299715	5300715	+	912.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009807, intron 3 of 9)	intron (NM_009807, intron 3 of 9)	1698.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	103.54	82.02	53.65	91.76	55.51	42.6	98.23	106.12	39.35
Merged-chr2-52967102-3	chr2	52966621	52967621	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	109253.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	72.08	65.89	33.3	97.83	59.71	53.85	68.65	53.06	34.97
Merged-chr14-66848875-3	chr14	66848367	66849367	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	19733.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.58	5.07	4.62	5.4	4.67	6.43	6.34	7.96	8.12
Merged-chr7-16951471-3	chr7	16950971	16951971	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6789.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	4.0	5.53	3.7	2.02	2.33	1.61	7.39	0.88	0.0
Merged-chr6-136718943-3	chr6	136718434	136719434	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 18 of 25)	MER44B|DNA|TcMar-Tigger	-57041.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	9.15	11.52	1.85	6.07	2.8	1.61	43.3	27.86	17.49
Merged-chr4-63391460-3	chr4	63390954	63391954	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	6786.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	53.77	27.65	41.62	40.48	33.12	50.64	40.14	34.93	16.86
Merged-chr9-38724218-3	chr9	38723715	38724715	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 6 of 18)	intron (NM_001145957, intron 6 of 18)	5947.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	20.59	15.67	10.17	18.89	10.26	11.25	19.01	11.94	5.0
Merged-chr12-86740216-3	chr12	86739737	86740737	+	912.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195767, intron 3 of 14)	B3A|SINE|B2	5868.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	5.15	2.76	4.62	8.77	4.67	4.02	5.28	3.98	1.25
Merged-chr17-44614183-2	chr17	44613675	44614675	+	912.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271627, intron 6 of 7)	intron (NM_001271627, intron 6 of 7)	122001.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	9.15	9.68	9.25	7.42	5.6	11.25	7.39	1.33	3.75
Merged-chr6-81443392-3	chr6	81442919	81443919	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	452244.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	10.87	6.91	6.47	12.14	12.13	3.22	22.18	22.99	13.12
Merged-chr15-83122205-3	chr15	83121757	83122757	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358061, intron 1 of 3)	intron (NM_001358061, intron 1 of 3)	544.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	74.37	76.49	95.27	93.11	65.31	84.4	65.48	74.28	49.96
Merged-chr17-84191096-3	chr17	84190579	84191579	+	912.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183021, exon 38 of 38)	3' UTR (NM_183021, exon 38 of 38)	-3132.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	10.3	11.06	3.7	14.17	7.46	12.06	5.28	4.86	9.37
Merged-chr2-155585634-3	chr2	155585123	155586123	+	912.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291111, intron 1 of 11)	MIR|SINE|MIR	7187.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	21.74	24.88	28.67	46.56	43.85	42.6	62.31	69.42	24.36
Merged-chr1-85961103-3	chr1	85960595	85961595	+	912.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033290)	promoter-TSS (NM_001033290)	-40.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	14.3	4.61	3.7	12.14	5.13	9.65	12.67	6.63	5.62
Merged-chr2-128387503-2	chr2	128387005	128388005	+	912.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	41846.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	27.46	9.22	32.37	18.89	16.33	30.54	30.63	23.88	16.86
Merged-chr18-34193219-3	chr18	34192712	34193712	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27772.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	13.73	18.89	5.55	11.47	14.0	9.65	11.62	19.01	9.37
Merged-chr16-44066580-3	chr16	44066083	44067083	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-24575.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	16.59	10.14	14.8	18.22	13.06	6.43	31.69	17.24	13.12
Merged-chr11-64496880-3	chr11	64496367	64497367	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-60193.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	66.93	63.13	51.8	10.8	12.6	27.33	66.54	57.92	16.86
Merged-chr1-84957881-3	chr1	84957369	84958369	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-22786.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.86	3.69	0.0	4.05	2.33	3.22	1.06	4.86	0.0
Merged-chr13-102849247-1	chr13	102848747	102849747	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	MLT1E3|LTR|ERVL-MaLR	88992.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	8.01	7.37	5.55	6.07	10.26	14.47	8.45	5.75	16.24
Merged-chr11-69682960-3	chr11	69682469	69683469	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163571)	promoter-TSS (NM_001163571)	-885.0	NM_001163571	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	92.1	85.71	71.22	97.16	69.98	49.03	91.89	89.32	56.21
Merged-chr7-100502758-1	chr7	100502258	100503258	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_153527)	TTS (NM_153527)	9400.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	34.32	38.71	53.65	39.13	35.45	57.87	47.53	63.23	41.84
Merged-chr10-80598216-3	chr10	80597712	80598712	+	912.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-4668.0	NM_001100606	100113398.0	Mm.273170	NM_001100606	ENSMUSG00000113640	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	92.1	82.02	70.3	112.68	59.25	81.18	104.56	189.25	93.05
Merged-chrX-106623832-1	chrX	106623332	106624332	+	912.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	intron (NM_001033541, intron 1 of 3)	-20153.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	2.86	4.15	1.85	6.75	0.93	0.0	5.28	2.21	1.25
Merged-chr1-39650935-3	chr1	39650389	39651389	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170597, exon 1 of 4)	exon (NM_170597, exon 1 of 4)	293.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	6.86	4.61	1.85	4.05	2.33	6.43	4.22	1.77	3.75
Merged-chr5-115624224-3	chr5	115623741	115624741	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7575.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	22.88	7.83	5.55	15.52	9.8	21.7	14.79	5.31	3.75
Merged-chr7-106236874-3	chr7	106236390	106237390	+	912.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21550.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	48.62	70.96	71.22	33.06	55.98	31.35	118.29	191.9	71.82
Merged-chr9-53386892-3	chr9	53386376	53387376	+	912.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 1 of 7)	intron (NM_212445, intron 1 of 7)	2853.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	141.87	211.5	97.12	175.43	165.61	127.0	155.26	191.9	102.42
Merged-chr11-110420714-2	chr11	110420212	110421212	+	912.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	21610.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	9.15	8.29	12.95	7.42	5.13	10.45	23.24	16.36	9.99
Merged-chr2-137115543-1	chr2	137115043	137116043	+	912.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013822, exon 2 of 26)	exon (NM_013822, exon 2 of 26)	977.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	10.3	4.15	9.25	12.82	6.53	1.61	3.17	7.96	6.87
Merged-chrX-11664777-4	chrX	11664206	11665206	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	336884.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	33.18	23.04	25.9	38.46	24.26	23.31	27.46	21.22	11.87
Merged-chr14-58072102-3	chr14	58071577	58072577	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013518)	promoter-TSS (NM_013518)	-609.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	10.3	7.83	11.1	8.1	4.2	10.45	7.39	2.65	6.25
Merged-chr1-172352572-3	chr1	172352072	172353072	+	912.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	11362.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	42.33	29.49	12.02	33.06	37.79	61.09	33.8	29.63	31.23
Merged-chr3-38371900-3	chr3	38371402	38372402	+	912.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112914.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	13.16	18.43	10.17	14.17	14.93	14.47	7.39	12.38	7.49
Merged-chr17-80175210-3	chr17	80174685	80175685	+	912.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 4 of 6)	intron (NM_176963, intron 4 of 6)	32120.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	16.59	9.22	5.55	15.52	8.4	5.63	19.01	15.03	0.0
Merged-chr12-101718510-2	chr12	101717956	101718956	+	912.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082976)	promoter-TSS (NM_001082976)	67.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.0	3.23	11.1	3.37	3.27	0.0	3.17	2.65	6.25
Merged-chr19-11469455-3	chr19	11468951	11469951	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028595)	promoter-TSS (NM_028595)	83.0	NM_028595	73656.0	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	62.93	56.22	58.27	53.98	43.39	52.25	53.87	57.92	31.23
Merged-chr10-120848019-1	chr10	120847519	120848519	+	912.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-9610.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	16.02	11.98	5.55	25.64	8.86	3.22	7.39	4.42	1.25
Merged-chr17-71102676-3	chr17	71102181	71103181	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 24 of 36)	intron (NM_001083934, intron 24 of 36)	-80851.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	37.18	35.48	33.3	47.9	33.59	47.42	30.63	34.05	33.72
Merged-chr2-116890509-3	chr2	116889990	116890990	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355572, intron 10 of 10)	intron (NM_001355572, intron 10 of 10)	-9662.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	16.59	12.44	3.7	23.62	11.2	8.04	7.39	14.59	13.74
Merged-chr18-54990336-3	chr18	54989823	54990823	+	912.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175751)	promoter-TSS (NM_175751)	-143.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	204.22	255.27	110.99	197.02	190.8	114.94	186.94	209.59	112.42
Merged-chr10-14545408-3	chr10	14544909	14545909	+	912.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001002268)	promoter-TSS (NM_001002268)	-373.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	3.43	4.15	0.0	4.72	4.2	5.63	29.57	4.42	3.75
Merged-chr9-119977055-3	chr9	119976543	119977543	+	912.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153287, exon 2 of 5)	exon (NM_153287, exon 2 of 5)	5980.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	36.04	25.8	32.37	21.59	14.93	22.51	41.19	32.72	14.99
Merged-chr3-131894618-2	chr3	131894161	131895161	+	912.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-190631.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.86	5.99	3.7	5.4	7.46	4.82	23.24	15.03	15.61
Merged-chr2-5579610-3	chr2	5579107	5580107	+	912.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	96439.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	13.73	11.52	6.47	12.14	7.46	8.04	5.28	12.82	2.5
Merged-chr2-163750115-4	chr2	163749601	163750601	+	912.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007398, exon 1 of 12)	5' UTR (NM_007398, exon 1 of 12)	138.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	35.47	25.34	30.52	34.41	37.79	41.8	33.8	22.99	7.49
Merged-chr18-39607354-3	chr18	39606863	39607863	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120118.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	17.73	17.51	31.45	23.62	22.39	16.08	50.7	30.95	22.48
Merged-chr8-84799327-3	chr8	84798832	84799832	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	CpG	1006.0	NM_010906	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	24.03	11.06	9.25	22.27	7.46	8.84	20.07	9.73	11.24
Merged-chr1-39580968-3	chr1	39580469	39581469	+	912.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3622.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	80.66	70.5	46.25	55.33	43.39	57.87	54.92	46.87	31.85
Merged-chr2-165883137-3	chr2	165882637	165883637	+	912.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281926)	promoter-TSS (NM_001281926)	-859.0	NM_001281926	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	199.65	152.52	125.79	219.28	170.74	180.85	232.36	203.4	109.92
Merged-chrX-17591036-1	chrX	17590536	17591536	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18711.0	NM_028058	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	3.43	2.76	11.1	6.75	6.53	8.04	2.11	2.65	8.74
Merged-chr9-108995405-3	chr9	108994914	108995914	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 1 of 13)	intron (NR_153430, intron 1 of 13)	3512.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	44.62	44.24	33.3	38.46	40.12	44.21	47.53	42.45	21.23
Merged-chr6-83109134-3	chr6	83108630	83109630	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026744)	promoter-TSS (NM_026744)	22.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	71.51	73.26	88.8	62.07	60.65	98.06	80.27	86.22	60.58
Merged-chr5-22898766-2	chr5	22898269	22899269	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	MIR3|SINE|MIR	-151885.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	9.15	11.98	11.1	0.0	3.73	7.23	7.39	7.96	5.0
Merged-chr1-171060449-1	chr1	171059949	171060949	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR9B|LTR|ERVK	-1046.0	NM_010188	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	46.91	59.44	67.52	54.65	38.25	51.44	35.91	35.37	44.97
Merged-chr19-32782209-1	chr19	32781709	32782709	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	ID_B1|SINE|B4	24632.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	37.18	41.47	31.45	30.36	31.26	45.82	29.57	39.35	20.61
Merged-chr13-51115953-2	chr13	51115433	51116433	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283029, intron 1 of 5)	intron (NM_001283029, intron 1 of 5)	14386.0	NM_001283029	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	6.29	8.29	12.95	7.42	7.0	8.04	12.67	3.54	7.49
Merged-chr12-85472947-1	chr12	85472447	85473447	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010234)	promoter-TSS (NM_010234)	-943.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	381.56	263.11	173.89	365.7	272.44	233.9	271.44	265.3	125.53
Merged-chr3-21735942-2	chr3	21735445	21736445	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-340707.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	19.45	20.27	11.1	22.94	12.13	29.74	31.69	11.94	19.36
Merged-chr10-127421134-3	chr10	127420642	127421642	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001168293, exon 1 of 24)	5' UTR (NM_001168293, exon 1 of 24)	275.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	179.05	141.0	58.27	118.75	78.37	81.18	122.52	124.25	93.05
Merged-chr17-5402839-3	chr17	5402343	5403343	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15924.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	1.14	3.69	0.0	7.42	2.8	3.22	3.17	1.33	5.0
Merged-chr17-35395282-1	chr17	35394782	35395782	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_051981, exon 3 of 3)	non-coding (NR_051981, exon 3 of 3)	1183.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	6.29	6.45	5.55	6.75	1.4	0.0	6.34	1.33	0.0
Merged-chr10-79704897-1	chr10	79704397	79705397	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077184, intron 1 of 6)	intron (NM_001077184, intron 1 of 6)	539.0	NM_009768	12215.0	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	93.82	91.24	41.62	96.48	79.77	65.91	119.35	103.47	41.22
Merged-chr10-81559501-4	chr10	81559050	81560050	+	912.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_074087, exon 1 of 7)	non-coding (NR_074087, exon 1 of 7)	106.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	124.14	63.13	81.4	117.4	64.84	103.69	91.89	68.54	58.71
Merged-chr7-125470124-1	chr7	125469624	125470624	+	912.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360659, intron 5 of 7)	intron (NM_001360659, intron 5 of 7)	21418.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	2.29	1.38	5.55	6.07	3.73	8.04	6.34	0.0	2.5
Merged-chr6-30301055-1	chr6	30300555	30301555	+	912.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	3484.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	45.76	42.39	44.4	47.9	35.45	40.19	51.75	47.31	49.96
Merged-chr13-107860205-3	chr13	107859724	107860724	+	911.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	29840.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	14.87	12.9	2.77	21.59	13.06	8.84	22.18	17.24	14.36
Merged-chr15-39785579-4	chr15	39785034	39786034	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164466, intron 8 of 9)	intron (NM_001164466, intron 8 of 9)	-11511.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	10.3	8.29	5.55	6.75	5.13	5.63	12.67	5.75	6.25
Merged-chr8-70546621-3	chr8	70546192	70547192	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	7017.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	38.33	27.19	20.35	69.5	80.24	27.33	20.07	15.48	17.49
Merged-chr11-59848261-3	chr11	59847760	59848760	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134029, exon 1 of 5)	exon (NM_134029, exon 1 of 5)	187.0	NM_134029	103850.0	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	34.9	26.73	56.42	36.43	30.79	72.34	54.92	30.51	29.98
Merged-chr10-111411759-3	chr10	111411289	111412289	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61438.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	14.3	18.43	14.8	18.22	7.46	20.09	20.07	14.59	16.24
Merged-chr8-25980880-3	chr8	25980365	25981365	+	911.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-4121.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	120.13	107.36	74.92	140.34	122.23	150.31	134.14	119.39	107.42
Merged-chr4-8939181-3	chr4	8938685	8939685	+	911.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187861.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	10.3	7.37	5.55	21.59	18.19	19.29	16.9	11.05	16.86
Merged-chr17-46680363-3	chr17	46679838	46680838	+	911.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102392)	promoter-TSS (NR_102392)	-115.0	NM_001277310	17256.0	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	58.35	52.53	91.57	70.17	48.05	75.56	77.1	68.54	52.46
Merged-chr17-28510638-3	chr17	28510145	28511145	+	911.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20216.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	47.48	35.02	22.2	52.63	30.32	24.11	31.69	23.88	19.98
Merged-chr10-69260159-3	chr10	69259665	69260665	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	46971.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	21.17	17.05	47.17	28.34	14.93	26.53	20.07	18.57	28.1
Merged-chr14-21848413-3	chr14	21847924	21848924	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_176925, exon 1 of 3)	5' UTR (NM_176925, exon 1 of 3)	486.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	73.22	42.39	35.15	86.36	81.17	81.18	68.65	58.81	18.11
Merged-chr7-67308297-3	chr7	67307790	67308790	+	911.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	64568.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	19.45	24.88	12.95	16.19	16.33	8.84	17.96	17.24	16.24
Merged-chr11-75586450-3	chr11	75585954	75586954	+	911.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1625.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	53.2	53.91	37.92	44.53	40.59	32.15	46.47	42.01	28.73
Merged-chr12-26068479-3	chr12	26068044	26069044	+	911.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141961.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	9.72	5.07	0.92	12.82	7.0	8.04	10.56	2.21	1.25
Merged-chr14-14800067-2	chr14	14799566	14800566	+	911.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360516)	TTS (NM_001360516)	-20749.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	52.06	62.21	55.5	45.21	48.05	65.11	53.87	27.86	55.58
Merged-chr3-106573393-3	chr3	106572878	106573878	+	911.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 6 of 6)	intron (NM_001025582, intron 6 of 6)	-25576.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	32.61	33.18	24.97	32.39	36.39	25.72	31.69	44.22	26.85
Merged-chr13-9107577-3	chr13	9107077	9108077	+	911.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	13696.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	18.88	13.82	21.27	20.92	12.6	15.27	24.29	23.43	12.49
Merged-chr5-34536067-3	chr5	34535559	34536559	+	911.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	-7306.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	104.11	90.31	94.35	119.43	104.03	111.73	106.67	98.16	71.82
Merged-chr7-97077144-3	chr7	97076638	97077638	+	911.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4613.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	47.48	56.22	49.95	64.1	55.51	84.4	105.62	97.28	56.83
Merged-chr2-24608983-1	chr2	24608483	24609483	+	911.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042528, intron 44 of 46)	intron (NM_001042528, intron 44 of 46)	-133384.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	2.29	2.76	9.25	4.72	9.8	9.65	2.11	2.21	7.49
Merged-chr16-97480987-3	chr16	97480487	97481487	+	911.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020622, intron 3 of 7)	MTE2b|LTR|ERVL-MaLR	-18081.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	24.6	21.66	26.82	7.42	10.26	11.25	21.12	25.2	22.48
Merged-chr10-19554029-3	chr10	19553545	19554545	+	911.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37904.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	25.17	30.87	14.8	31.71	28.46	32.96	27.46	36.7	26.85
Merged-chr18-65466320-3	chr18	65465830	65466830	+	911.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172833, intron 12 of 15)	intron (NM_172833, intron 12 of 15)	35333.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	6.86	5.99	3.7	2.7	7.0	1.61	5.28	4.86	3.75
Merged-chr12-117385509-3	chr12	117385005	117386005	+	911.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48493.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	29.75	78.79	30.52	15.52	27.06	19.29	8.45	8.84	9.99
Merged-chr4-47333734-3	chr4	47333230	47334230	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19492.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	12.59	13.36	18.5	13.49	14.93	8.84	10.56	17.24	8.74
Merged-chr8-126628825-3	chr8	126628317	126629317	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35381.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.58	7.37	5.55	12.82	5.13	8.04	4.22	4.42	1.25
Merged-chr13-54207244-3	chr13	54206750	54207750	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 1 of 3)	intron (NR_153432, intron 1 of 3)	15117.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	9.15	7.37	2.77	8.77	3.27	7.23	13.73	10.61	9.99
Merged-chr1-161713137-2	chr1	161712638	161713638	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75357.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	3.43	3.23	5.55	7.42	5.13	3.22	3.17	3.54	3.75
Merged-chr5-122093185-2	chr5	122092678	122093678	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7773.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	5.72	3.23	12.95	2.7	3.27	0.0	3.17	0.0	5.0
Merged-chr11-3162833-4	chr11	3162333	3163333	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	intron (NM_030207, intron 9 of 32)	30630.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	53.77	79.25	108.22	101.88	97.03	126.19	14.79	14.15	141.14
Merged-chr7-81214146-3	chr7	81213608	81214608	+	911.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	CpG	304.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	231.68	211.04	185.92	286.08	211.33	236.31	232.36	178.64	155.51
Merged-chr2-150779363-3	chr2	150778845	150779845	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7451.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	22.88	18.43	23.12	26.31	18.19	38.58	30.63	13.71	13.74
Merged-chr4-129701666-3	chr4	129701173	129702173	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4828.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	9.72	19.35	12.95	16.19	12.6	15.27	36.97	18.13	14.99
Merged-chr9-35118845-3	chr9	35118334	35119334	+	911.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029475, intron 2 of 5)	intron (NR_029475, intron 2 of 5)	-1970.0	NM_009178	20443.0	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	SIAT4-C|ST3Gal IV|ST3GalIV|Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	82.38	106.44	64.75	87.71	68.58	102.08	115.12	129.55	101.17
Merged-chr8-125726899-5	chr8	125726462	125727462	+	911.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-7241.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	50.91	67.27	68.45	58.7	55.05	81.99	82.38	82.24	84.94
Merged-chr13-81225201-3	chr13	81224700	81225700	+	911.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	261126.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	16.59	19.81	14.8	31.04	28.92	34.56	10.56	16.8	28.73
Merged-chr11-115153951-4	chr11	115153306	115154306	+	911.6785890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021411)	promoter-TSS (NM_021411)	-372.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	21.74	13.36	11.1	8.1	4.2	0.0	8.45	6.19	3.75
Merged-chr13-63696620-1	chr13	63696120	63697120	+	911.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126476, intron 4 of 4)	intron (NR_126476, intron 4 of 4)	37678.0	NR_126476	75522.0	Mm.54259	NR_126476	ENSMUSG00000113825	1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0.0	2.76	1.85	4.72	0.47	1.61	2.11	2.21	11.24
Merged-chr16-29606850-1	chr16	29606350	29607350	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27516.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	34.32	21.66	25.9	46.56	27.99	36.97	43.3	20.78	14.99
Merged-chr16-29903652-1	chr16	29903152	29904152	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75472.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	2.29	2.3	3.7	4.05	4.2	0.0	0.0	0.88	2.5
Merged-chr2-73513423-3	chr2	73512960	73513960	+	911.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	16027.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	34.32	44.24	56.42	44.53	26.12	67.52	63.37	33.6	31.23
Merged-chr13-64369175-3	chr13	64368650	64369650	+	911.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009984, exon 2 of 8)	exon (NM_009984, exon 2 of 8)	1370.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	24.03	21.2	8.32	28.34	21.46	35.37	25.35	22.99	18.11
Merged-chr14-62120478-1	chr14	62119978	62120978	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172501.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.15	5.07	9.25	24.29	8.86	17.68	4.22	8.84	5.0
Merged-chr2-145871782-1	chr2	145871282	145872282	+	911.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-31459.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	11.44	8.75	12.95	9.45	8.4	16.08	2.11	7.07	7.49
Merged-chr8-107435753-3	chr8	107435235	107436235	+	911.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025830)	promoter-TSS (NM_025830)	-663.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	82.38	65.43	32.37	85.69	106.83	45.82	99.28	88.43	31.85
Merged-chr4-140987283-7	chr4	140986843	140987843	+	911.6530759999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164366, intron 1 of 28)	intron (NM_001164366, intron 1 of 28)	470.0	NM_001164366	74772.0	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	156.17	156.67	158.17	179.47	176.81	176.83	229.19	240.1	119.91
Merged-chr12-32765871-3	chr12	32765362	32766362	+	911.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54473.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	38.9	43.77	42.55	31.71	30.32	43.4	35.91	30.95	8.74
Merged-chr19-25139518-1	chr19	25139018	25140018	+	911.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-97457.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	11.44	11.06	8.32	8.1	7.0	3.22	20.07	26.09	19.98
Merged-chr10-19693067-6	chr10	19692539	19693539	+	911.586121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19548.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	113.27	107.36	70.3	93.11	78.84	105.3	102.45	92.41	69.32
Merged-chr11-28188335-2	chr11	28187838	28188838	+	911.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395986.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	1.14	0.92	0.0	5.4	1.4	3.22	1.06	3.54	3.12
Merged-chr5-124493573-3	chr5	124493083	124494083	+	911.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021430, exon 7 of 7)	3' UTR (NM_021430, exon 7 of 7)	10428.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	51.48	42.85	25.9	68.82	44.32	36.97	59.15	65.0	34.35
Merged-chr4-117202411-4	chr4	117201908	117202908	+	911.569458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19784.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	95.53	96.76	80.47	72.87	67.64	77.97	84.49	84.01	42.47
Merged-chr18-62069024-3	chr18	62068510	62069510	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110971.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	37.76	44.24	29.6	45.88	34.06	47.42	35.91	27.86	24.36
Merged-chr2-24341635-3	chr2	24341127	24342127	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031167, intron 1 of 4)	intron (NM_031167, intron 1 of 4)	-3664.0	NM_001159562	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	7.44	4.61	5.55	5.4	4.67	4.02	4.22	7.07	6.87
Merged-chr8-14879329-3	chr8	14878835	14879835	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR31C_MM|LTR|ERVK	-9201.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.86	1.84	2.77	4.05	3.27	3.22	1.06	6.63	4.37
Merged-chr11-118353761-3	chr11	118353266	118354266	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 1 of 4)	intron (NM_011594, intron 1 of 4)	1645.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	24.6	22.12	26.82	41.83	30.32	62.7	23.24	22.99	18.11
Merged-chr8-40423728-3	chr8	40423228	40424228	+	911.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357249)	promoter-TSS (NM_001357249)	-87.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	19.45	10.6	1.85	17.54	10.26	19.29	1.06	1.33	1.25
Merged-chr11-60879570-3	chr11	60879060	60880060	+	911.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168507)	promoter-TSS (NM_001168507)	-522.0	NM_001168507	216821.0	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	202.51	193.99	160.94	204.44	236.05	213.0	207.01	278.12	109.29
Merged-chr10-78297762-3	chr10	78297259	78298259	+	911.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	42448.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	138.44	99.07	71.22	162.61	104.96	94.04	102.45	121.6	42.47
Merged-chr9-58204798-3	chr9	58204328	58205328	+	911.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	-509.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	7.44	4.61	0.0	8.1	4.67	6.43	6.34	0.88	6.25
Merged-chr8-69091239-3	chr8	69090730	69091730	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-2008.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	53.2	53.45	18.5	37.11	28.92	31.35	64.43	72.07	22.48
Merged-chr9-40776645-1	chr9	40776145	40777145	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 5 of 6)	RSINE1|SINE|B4	-24628.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	12.59	10.14	7.4	17.54	7.0	2.41	3.17	3.1	0.0
Merged-chr12-25438530-1	chr12	25438030	25439030	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	309356.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.86	2.76	2.77	5.4	1.87	3.22	7.39	2.65	5.0
Merged-chr4-116175896-2	chr4	116175406	116176406	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2534.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	18.31	16.59	7.4	29.69	21.93	35.37	25.35	33.16	24.98
Merged-chr14-118900588-1	chr14	118900088	118901088	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360411, intron 11 of 21)	intron (NM_001360411, intron 11 of 21)	22203.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	20.02	19.35	12.02	28.34	25.19	15.27	23.24	19.01	5.0
Merged-chr15-98894085-2	chr15	98893564	98894564	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007857, exon 3 of 3)	exon (NM_007857, exon 3 of 3)	4476.0	NM_007857	13363.0	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	20.02	7.83	11.1	16.87	12.13	8.04	7.39	9.73	2.5
Merged-chr15-64003326-3	chr15	64002823	64003823	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	GA-rich|Low_complexity|Low_complexity	-5257.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	20.59	27.65	24.05	20.92	12.13	25.72	22.18	19.01	11.87
Merged-chr9-114690332-2	chr9	114689822	114690822	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1491.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	8.01	7.83	14.8	9.45	6.06	1.61	15.84	15.03	3.12
Merged-chr17-86663730-3	chr17	86663231	86664231	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-90133.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	53.77	48.84	24.05	165.98	179.14	137.45	50.7	81.8	38.1
Merged-chr4-141857654-3	chr4	141857144	141858144	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025994)	TTS (NM_025994)	-11285.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	50.91	44.24	46.25	59.38	34.52	35.37	68.65	46.87	38.1
Merged-chr11-108261963-3	chr11	108261463	108262463	+	911.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	L1MB2|LINE|L1	81925.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	16.59	7.83	0.0	9.45	1.4	11.25	22.18	6.19	3.75
Merged-chr1-143888682-1	chr1	143888182	143889182	+	911.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111404.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	5.15	4.61	1.85	2.7	2.33	5.63	2.11	4.86	16.24
Merged-chr10-118736288-3	chr10	118735789	118736789	+	911.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	132614.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	19.45	9.22	13.87	14.17	10.73	22.51	39.08	26.97	18.11
Merged-chr1-143710567-3	chr1	143710101	143711101	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-7708.0	NM_145991	214498.0	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	18.88	17.97	15.72	17.54	16.33	31.35	11.62	15.48	12.49
Merged-chr3-126650564-3	chr3	126650062	126651062	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	53611.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	10.3	11.52	14.8	10.8	10.26	6.43	12.67	5.75	9.37
Merged-chr2-167951442-3	chr2	167950952	167951952	+	911.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	19125.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	61.21	59.44	51.8	105.26	91.44	50.64	63.37	42.01	34.97
Merged-chrX-140542413-4	chrX	140541955	140542955	+	911.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 2 of 3)	intron (NM_001077364, intron 2 of 3)	213.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	117.27	149.29	139.67	109.3	106.36	97.26	135.19	205.17	124.91
Merged-chr1-172321603-2	chr1	172321102	172322102	+	911.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008429, exon 4 of 4)	3' UTR (NM_008429, exon 4 of 4)	7720.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	21.17	12.44	43.47	20.92	15.86	32.15	8.45	8.4	8.74
Merged-chr12-102730558-2	chr12	102730060	102731060	+	911.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	13101.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	7.44	5.07	17.57	6.75	4.2	6.43	3.17	1.33	9.99
Merged-chr3-69679582-2	chr3	69679062	69680062	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-42493.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	34.32	35.94	25.9	55.33	30.32	53.05	60.2	45.1	46.22
Merged-chr7-79149046-1	chr7	79148546	79149546	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008594)	promoter-TSS (NM_008594)	14.0	NM_001045489	17304.0	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	4.58	0.92	3.7	5.4	0.93	1.61	2.11	0.44	3.12
Merged-chr4-138024845-1	chr4	138024345	138025345	+	911.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	27020.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	29.75	20.74	13.87	48.58	33.12	35.37	4.22	1.33	3.75
Merged-chr5-64804222-3	chr5	64803695	64804695	+	911.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	CpG	672.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	212.23	175.1	194.24	156.53	132.02	186.48	203.84	169.35	159.88
Merged-chr3-142527631-3	chr3	142527125	142528125	+	911.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2711.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	10.87	16.13	12.95	8.1	5.13	8.04	33.8	19.9	12.49
Merged-chr2-150981553-2	chr2	150981056	150982056	+	911.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	27842.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	18.31	13.36	3.7	17.54	7.46	12.06	16.9	6.63	6.25
Merged-chr6-124993522-3	chr6	124993013	124994013	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3207.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	22.88	12.9	9.25	63.42	38.25	40.19	10.56	12.38	12.49
Merged-chr8-40294479-3	chr8	40293982	40294982	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7529.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	32.04	12.44	5.55	37.78	27.99	14.47	6.34	10.17	7.49
Merged-chr4-149462470-1	chr4	149461970	149462970	+	911.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7502.0	NM_022020	63954.0	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	5.72	5.99	5.55	11.47	6.06	1.61	15.84	4.86	11.24
Merged-chr18-52468296-1	chr18	52467796	52468796	+	911.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026040, intron 1 of 7)	intron (NM_026040, intron 1 of 7)	2603.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	3.43	1.38	12.95	2.7	2.33	8.04	29.57	32.28	9.99
Merged-chr2-153515179-1	chr2	153514679	153515679	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	intron (NM_001134300, intron 1 of 10)	14792.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	22.31	7.83	10.17	3.37	6.06	4.02	5.28	4.42	2.5
Merged-chr10-128779041-3	chr10	128778592	128779592	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11818.0	NM_001164197	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	282.02	277.39	188.69	267.86	243.98	231.49	256.65	307.31	158.63
Merged-chr1-181256435-3	chr1	181255970	181256970	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44492.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	57.78	94.92	104.52	76.24	82.57	119.76	107.73	91.53	79.32
Merged-chr7-67458079-3	chr7	67457561	67458561	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-85203.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	32.61	58.06	77.7	32.39	50.85	63.5	46.47	45.1	46.84
Merged-chr4-154019671-3	chr4	154019173	154020173	+	911.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163722)	TTS (NM_001163722)	6371.0	NM_001163722	68859.0	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	6.29	15.67	16.65	7.42	5.13	16.88	17.96	9.29	18.74
Merged-chr1-85985917-3	chr1	85985426	85986426	+	911.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24871.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	33.18	14.75	15.72	20.92	10.73	11.25	36.97	30.51	14.99
Merged-chr10-84549297-3	chr10	84548801	84549801	+	911.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040658, exon 3 of 4)	non-coding (NR_040658, exon 3 of 4)	4037.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	25.74	27.65	28.67	33.74	29.86	41.8	40.14	37.14	24.36
Merged-chr7-46963443-3	chr7	46962947	46963947	+	911.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4929.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	3.43	4.15	0.0	3.37	3.27	3.22	9.51	4.42	3.75
Merged-chr6-129276681-3	chr6	129276194	129277194	+	911.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1325.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	5.15	5.99	7.4	9.45	1.87	6.43	6.34	3.98	2.5
Merged-chr13-36547479-3	chr13	36546979	36547979	+	911.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	186998.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	15.45	14.28	12.02	10.12	12.13	17.68	24.29	26.53	17.49
Merged-chr16-89844756-3	chr16	89844243	89845243	+	911.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 12 of 27)	intron (NM_009384, intron 12 of 27)	-26391.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.15	2.76	0.0	4.05	4.67	2.41	1.06	1.33	3.75
Merged-chr10-128097382-1	chr10	128096882	128097882	+	911.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	CpG	4599.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	239.12	185.7	233.09	135.62	124.56	161.56	199.62	184.83	148.01
Merged-chr19-53452743-2	chr19	53452241	53453241	+	911.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	12055.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	28.6	18.89	13.87	31.71	29.86	35.37	4.22	3.98	1.25
Merged-chr14-47004133-5	chr14	47003621	47004621	+	911.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	2781.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	17.73	18.89	23.12	17.54	18.19	17.68	19.01	20.78	14.99
Merged-chr10-128082179-3	chr10	128081683	128082683	+	911.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1124.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	15.45	17.97	30.52	22.27	17.26	20.09	19.01	21.67	20.61
Merged-chrX-102094636-3	chrX	102094110	102095110	+	911.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23303.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	2.29	3.23	1.85	4.72	2.33	1.61	9.51	5.31	0.0
Merged-chr1-64118904-3	chr1	64118369	64119369	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	2520.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	68.07	113.35	74.92	98.51	78.37	119.76	96.11	88.88	64.33
Merged-chr16-93812486-3	chr16	93811998	93812998	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(ACTG)n|Simple_repeat|Simple_repeat	-17597.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	38.9	23.04	12.95	84.34	43.39	38.58	137.3	96.83	34.35
Merged-chr12-76196739-3	chr12	76196243	76197243	+	911.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19484.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	17.73	10.6	5.55	5.4	8.4	3.22	3.17	3.1	1.87
Merged-chr11-114209087-2	chr11	114208598	114209598	+	911.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10840.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	5.15	3.23	2.77	2.02	2.33	0.0	11.62	6.19	6.25
Merged-chr13-48548514-3	chr13	48548017	48549017	+	911.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10245.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	34.32	31.33	27.75	24.96	25.66	40.19	54.92	49.08	18.11
Merged-chr6-124916038-3	chr6	124915540	124916540	+	911.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152158)	promoter-TSS (NR_152158)	-823.0	NR_152158	442825.0	Mm.446713	NR_152158	ENSMUSG00000055818	A230083G16Rik	-	RIKEN cDNA A230083G16 gene	ncRNA	25.17	16.13	14.8	34.41	9.8	8.84	23.24	11.05	6.25
Merged-chr4-63823357-2	chr4	63822850	63823850	+	911.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	37934.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	5.15	5.99	11.1	7.42	4.2	14.47	10.56	8.4	6.25
Merged-chr18-10229773-2	chr18	10229265	10230265	+	911.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47973.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	1.72	3.69	7.4	1.35	3.27	14.47	2.11	1.77	12.49
Merged-chr9-57638101-3	chr9	57637615	57638615	+	911.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	7538.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	54.35	47.0	65.67	57.35	78.37	72.34	90.83	99.93	39.97
Merged-chr19-11559815-3	chr19	11559293	11560293	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22944.0	NM_025658	66607.0	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	14.87	16.59	20.35	8.77	8.4	28.13	25.35	17.24	18.74
Merged-chr18-4351886-3	chr18	4351382	4352382	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1071.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	135.0	173.25	139.67	148.44	140.42	135.84	211.24	205.61	114.91
Merged-chr12-51939897-3	chr12	51939390	51940390	+	911.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 11 of 35)	intron (NM_177171, intron 11 of 35)	31431.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	90.38	92.16	44.4	106.61	81.64	61.09	82.38	105.68	48.09
Merged-chr16-33381308-1	chr16	33380808	33381808	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358570)	promoter-TSS (NM_001358570)	6.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	140.15	94.0	138.74	108.63	105.43	135.84	167.93	98.16	81.81
Merged-chr8-46772998-1	chr8	46772498	46773498	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	33253.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	28.03	19.35	26.82	24.96	14.0	12.86	19.01	14.15	23.11
Merged-chr6-32521878-1	chr6	32521378	32522378	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	10737.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	2.86	11.98	1.85	6.07	5.13	6.43	8.45	7.52	0.0
Merged-chr12-79298047-3	chr12	79297544	79298544	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252562, intron 1 of 7)	intron (NM_001252562, intron 1 of 7)	693.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	30.89	30.41	11.1	76.92	59.25	43.4	83.44	79.59	14.99
Merged-chr8-79196861-1	chr8	79196361	79197361	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51722.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	4.0	6.91	0.0	2.02	6.06	1.61	4.22	0.0	3.75
Merged-chr15-91165218-1	chr15	91164718	91165718	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	MER20|DNA|hAT-Charlie	26789.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	5.72	3.23	5.55	5.4	2.33	6.43	4.22	2.65	3.75
Merged-chr17-5511646-3	chr17	5511151	5512151	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	19051.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	19.45	5.99	3.7	18.22	3.73	13.66	10.56	3.54	8.74
Merged-chr17-47255312-1	chr17	47254812	47255812	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	intron (NM_001097623, intron 4 of 19)	25082.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	9.72	16.13	12.95	31.04	20.53	24.92	5.28	5.31	5.62
Merged-chr5-43802007-1	chr5	43801507	43802507	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie9|DNA|hAT-Charlie	-16886.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	3.43	4.61	3.7	8.77	7.0	17.68	9.51	4.86	3.75
Merged-chr17-34342093-1	chr17	34341593	34342593	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001033978)	TTS (NM_001033978)	2552.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	33.18	31.79	48.1	8.1	11.66	10.45	8.45	9.73	1.87
Merged-chr7-110286337-1	chr7	110285837	110286837	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	6.29	3.23	3.7	8.77	3.73	4.82	5.28	1.33	1.25
Merged-chr10-20390802-1	chr10	20390302	20391302	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42983.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.0	2.3	1.85	8.1	2.33	6.43	5.28	6.19	5.0
Merged-chr5-41684178-1	chr5	41683678	41684678	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310592, intron 4 of 6)	Lx7|LINE|L1	23513.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.72	2.76	5.55	6.75	2.33	4.02	4.22	1.77	6.87
Merged-chr8-83100267-1	chr8	83099767	83100767	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65085.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	8.58	3.69	7.4	6.07	0.93	1.61	5.28	3.54	1.25
Merged-chr13-118767717-1	chr13	118767217	118768217	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	53018.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	4.0	9.22	7.4	2.7	7.0	3.22	3.17	8.4	9.99
Merged-chr11-23666464-2	chr11	23665972	23666972	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023651)	promoter-TSS (NM_023651)	496.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	268.29	258.96	164.64	279.33	249.12	186.48	276.72	278.12	140.52
Merged-chr7-145289523-1	chr7	145289023	145290023	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5512.0	NR_132642	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	5.15	2.3	0.0	4.72	5.13	7.23	5.28	0.0	2.5
Merged-chr1-134699213-2	chr1	134698728	134699728	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009307, intron 2 of 9)	intron (NM_009307, intron 2 of 9)	-10072.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	22.88	9.22	11.1	5.4	3.27	4.02	6.34	1.33	3.75
Merged-chr5-65107970-2	chr5	65107476	65108476	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347355, intron 1 of 10)	CpG	408.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	375.27	256.66	245.11	335.33	186.6	210.59	354.88	228.16	184.86
Merged-chr8-3711864-3	chr8	3711386	3712386	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8765.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	6.86	4.61	5.55	9.45	3.73	4.82	3.17	3.54	3.12
Merged-chr2-148491340-3	chr2	148490856	148491856	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47821.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	84.66	116.12	55.5	91.76	100.3	110.12	113.01	130.88	94.3
Merged-chr8-105573671-1	chr8	105573171	105574171	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271806, intron 1 of 4)	intron (NM_001271806, intron 1 of 4)	-5370.0	NM_007427	11604.0	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	9.72	8.29	9.25	4.72	3.73	3.22	3.17	3.98	1.25
Merged-chr9-7221223-1	chr9	7220723	7221723	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36718.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	100.11	139.16	84.17	87.71	91.44	92.44	72.88	96.39	84.94
Merged-chr17-5765939-3	chr17	5765457	5766457	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32700.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	24.6	16.13	22.2	16.19	5.6	4.82	8.45	8.84	11.24
Merged-chr10-39370673-2	chr10	39370177	39371177	+	911.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	C-rich|Low_complexity|Low_complexity	878.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	43.48	10.6	31.45	45.21	14.93	24.92	26.4	12.82	8.12
Merged-chr2-19274239-3	chr2	19273741	19274741	+	911.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-70076.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	8.58	6.91	5.55	12.14	5.13	0.0	7.39	2.21	2.5
Merged-chr17-15804562-3	chr17	15804017	15805017	+	910.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22069.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	8.01	9.22	8.32	6.75	4.2	4.82	12.67	5.75	7.49
Merged-chr15-73184533-3	chr15	73184030	73185030	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	CpG	417.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	225.39	162.66	137.82	231.43	163.74	167.99	215.46	128.67	93.05
Merged-chr8-120620450-3	chr8	120619960	120620960	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308449, intron 2 of 3)	intron (NM_001308449, intron 2 of 3)	13922.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	247.13	249.28	169.27	309.02	343.82	254.8	201.73	287.41	134.27
Merged-chrX-71039296-3	chrX	71038802	71039802	+	910.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10954.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	14.3	5.07	3.7	12.82	10.26	3.22	5.28	3.1	5.0
Merged-chr9-118589462-3	chr9	118588941	118589941	+	910.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17268.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.29	1.84	0.0	4.72	2.8	4.82	3.17	1.77	2.5
Merged-chr10-97313148-3	chr10	97312640	97313640	+	910.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110338.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	20.59	35.48	19.42	53.98	41.52	38.58	49.64	50.41	34.35
Merged-chr11-63093515-2	chr11	63093003	63094003	+	910.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 7 of 7)	intron (NM_027660, intron 7 of 7)	31844.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	15.45	14.28	24.05	39.81	22.86	37.78	78.16	76.49	37.47
Merged-chr1-64343435-3	chr1	64342918	64343918	+	910.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189386.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	23.45	13.82	5.55	18.89	20.53	12.86	15.84	14.15	18.74
Merged-chr19-17255728-3	chr19	17255215	17256215	+	910.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83790.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	22.88	27.19	23.12	27.66	26.12	42.6	24.29	17.69	11.24
Merged-chr6-123175549-5	chr6	123175077	123176077	+	910.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004159, intron 2 of 5)	intron (NM_001004159, intron 2 of 5)	2554.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	60.64	69.12	68.45	71.52	53.65	48.23	65.48	81.8	36.22
Merged-chr4-84372623-3	chr4	84372120	84373120	+	910.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172870, intron 4 of 5)	PB1D7|SINE|Alu	302466.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	8.01	6.45	2.77	18.22	9.33	4.02	8.45	10.61	5.0
Merged-chr2-151974312-3	chr2	151973812	151974812	+	910.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289151)	promoter-TSS (NM_001289151)	-331.0	NM_028666	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	31.46	20.27	3.7	23.62	11.2	8.04	11.62	8.84	6.25
Merged-chr10-93962366-2	chr10	93961858	93962858	+	910.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	1505.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	54.35	74.65	42.55	55.33	63.91	61.09	142.59	204.72	84.94
Merged-chr5-8347586-2	chr5	8347083	8348083	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	20577.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	36.61	58.52	43.47	38.46	38.72	46.62	17.96	24.76	17.49
Merged-chr6-71224510-3	chr6	71224032	71225032	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160127, intron 6 of 9)	MER76|LTR|ERVL	24653.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	28.6	26.26	19.42	36.43	24.26	27.33	32.74	34.93	13.74
Merged-chr17-31565485-2	chr17	31564985	31565985	+	910.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016670, intron 1 of 10)	CpG	712.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	147.02	94.92	80.47	120.1	73.71	57.07	125.69	51.73	69.32
Merged-chr9-118608591-2	chr9	118608102	118609102	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1893.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	126.42	166.8	135.04	148.44	215.99	192.11	170.05	217.55	138.02
Merged-chr14-16547752-1	chr14	16547252	16548252	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	27724.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	10.3	9.68	12.02	6.75	1.4	1.61	3.17	0.44	6.87
Merged-chr8-66393128-3	chr8	66392624	66393624	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	6823.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	21.17	29.49	23.12	39.13	17.73	28.94	25.35	32.28	23.73
Merged-chr3-100703394-3	chr3	100702894	100703894	+	910.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17921.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	6.86	5.99	0.0	6.07	6.06	6.43	7.39	7.07	7.49
Merged-chr14-120307109-3	chr14	120306548	120307548	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	596.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	26.31	33.18	15.72	26.31	22.39	22.51	38.02	31.84	16.86
Merged-chr6-70872287-3	chr6	70871788	70872788	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27773.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	101.83	103.68	52.72	78.94	90.5	60.28	53.87	69.86	23.73
Merged-chr8-128453663-3	chr8	128453137	128454137	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	94396.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	40.04	45.62	29.6	43.86	33.59	34.56	36.97	35.37	16.24
Merged-chr9-104039932-3	chr9	104039429	104040429	+	910.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 24 of 26)	intron (NM_028721, intron 24 of 26)	23192.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	93.82	117.5	57.35	80.97	83.51	74.75	90.83	88.43	42.47
Merged-chr15-102243983-3	chr15	102243473	102244473	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2527.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	19.45	21.2	33.3	11.47	10.73	40.99	27.46	16.8	19.36
Merged-chr3-95676956-3	chr3	95676465	95677465	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144899, exon 18 of 18)	exon (NM_144899, exon 18 of 18)	10952.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	28.03	15.21	21.27	27.66	19.13	14.47	38.02	24.76	12.49
Merged-chr7-81860748-3	chr7	81860249	81861249	+	910.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	1748.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	137.29	114.27	127.64	157.88	120.36	121.37	104.56	82.69	97.43
Merged-chr7-104258902-1	chr7	104258402	104259402	+	910.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030684, intron 4 of 7)	(TTC)n|Simple_repeat|Simple_repeat	14445.0	NM_030684	94094.0	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.0	0.46	0.0	3.37	0.47	0.0	7.39	3.54	7.49
Merged-chr16-42190323-1	chr16	42189823	42190823	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	113146.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	1.72	1.38	1.85	6.75	4.2	8.04	2.11	1.33	2.5
Merged-chrX-57309405-1	chrX	57308905	57309905	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	17196.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	12.59	15.67	21.27	18.22	10.73	12.86	9.51	13.27	8.74
Merged-chr14-51255063-1	chr14	51254563	51255563	+	910.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_053113)	TTS (NM_053113)	1049.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	25.17	27.65	13.87	26.99	20.06	5.63	14.79	6.63	5.0
Merged-chr13-112116224-3	chr13	112115707	112116707	+	910.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172244.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	19.45	4.15	6.47	10.8	9.8	12.86	4.22	3.1	6.25
Merged-chr4-148586817-2	chr4	148586317	148587317	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-4696.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	24.6	18.89	22.2	25.64	19.13	21.7	7.39	4.42	7.49
Merged-chr7-99263714-2	chr7	99263213	99264213	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_103487, exon 3 of 4)	non-coding (NR_103487, exon 3 of 4)	3505.0	NR_103487	381967.0	Mm.261763	NR_103487	ENSMUSG00000097015	Gm26705	-	predicted gene, 26705	ncRNA	5.72	2.76	0.0	7.42	4.2	0.0	4.22	3.98	2.5
Merged-chr7-29008897-2	chr7	29008389	29009389	+	910.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 100 of 105)	intron (NM_009109, intron 100 of 105)	26035.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	69.79	85.71	51.8	85.69	69.04	94.04	8.45	6.19	3.12
Merged-chr10-21419399-2	chr10	21418915	21419915	+	910.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	42115.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	1.72	3.69	11.1	0.0	4.67	1.61	52.81	47.31	34.35
Merged-chr7-89215902-3	chr7	89215410	89216410	+	910.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	MTC|LTR|ERVL-MaLR	122877.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	96.68	122.11	98.97	112.0	108.7	116.55	114.07	145.92	78.07
Merged-chr17-51288069-3	chr17	51287575	51288575	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	10087.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	5.72	2.76	5.55	6.75	3.27	3.22	6.34	0.44	0.0
Merged-chr19-41104612-3	chr19	41104133	41105133	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 12 of 20)	B4|SINE|B4	-27520.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	25.74	27.65	36.07	33.06	14.0	5.63	31.69	32.28	18.74
Merged-chr8-105171518-3	chr8	105171009	105172009	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161456, intron 2 of 4)	CpG-14413	835.0	NM_001161458	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	127.0	134.09	149.84	93.79	105.9	159.15	110.9	105.24	108.67
Merged-chr7-44527696-3	chr7	44527177	44528177	+	910.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019866, exon 6 of 6)	3' UTR (NM_019866, exon 6 of 6)	-3008.0	NM_146189	233199.0	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	65.79	40.09	6.47	62.75	76.51	18.49	29.57	26.53	9.37
Merged-chr11-45853085-3	chr11	45852587	45853587	+	910.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045520, intron 1 of 11)	intron (NM_001045520, intron 1 of 11)	1123.0	NM_001045520	216705.0	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	104.11	158.97	78.62	89.74	125.49	112.53	134.14	153.87	92.43
Merged-chr3-69923191-2	chr3	69922675	69923675	+	910.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-63281.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.57	0.46	0.0	7.42	1.87	1.61	4.22	0.0	1.25
Merged-chr18-54721262-1	chr18	54720762	54721762	+	910.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109518.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	3.43	5.53	3.7	19.57	14.93	18.49	4.22	4.42	2.5
Merged-chr9-83564411-2	chr9	83563927	83564927	+	910.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	16089.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	9.72	4.15	3.7	10.12	4.2	13.66	7.39	7.52	3.12
Merged-chr10-19108003-3	chr10	19107511	19108511	+	910.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-33738.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	29.17	25.8	7.4	39.13	14.46	11.25	50.7	25.65	14.99
Merged-chr17-56265229-3	chr17	56264671	56265671	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8378.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	66.93	53.91	51.8	86.36	61.58	39.39	78.16	77.38	46.84
Merged-chr18-62228505-3	chr18	62228019	62229019	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48419.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	65.21	82.02	40.7	59.38	34.52	39.39	48.58	30.07	58.08
Merged-chr8-61911125-3	chr8	61910561	61911561	+	910.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8367.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	78.94	82.48	58.27	85.69	53.65	81.18	85.55	102.58	53.08
Merged-chr19-10173601-3	chr19	10173112	10174112	+	910.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9276.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	52.63	55.29	53.65	65.45	52.72	59.48	28.52	34.05	31.23
Merged-chr13-113378485-3	chr13	113377980	113378980	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124364.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	18.88	8.75	14.8	58.7	48.52	36.97	50.7	48.2	21.86
Merged-chr15-75876120-3	chr15	75875615	75876615	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12608.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	16.59	9.68	7.4	10.8	4.67	16.88	22.18	11.05	3.12
Merged-chr5-100587800-3	chr5	100587298	100588298	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15593.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	78.37	90.31	73.07	68.15	48.52	63.5	104.56	103.47	69.95
Merged-chr9-92457447-1	chr9	92456947	92457947	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178711)	promoter-TSS (NM_178711)	69.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	6.29	12.9	1.85	17.54	16.79	17.68	10.56	5.31	1.25
Merged-chr7-25436380-3	chr7	25435882	25436882	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23496.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	18.88	23.96	17.57	18.89	18.19	43.4	33.8	22.99	35.6
Merged-chr3-27439830-3	chr3	27439303	27440303	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 24 of 26)	intron (NM_001356953, intron 24 of 26)	68452.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	18.31	19.81	24.05	43.18	44.32	35.37	26.4	17.24	16.24
Merged-chrX-106152006-1	chrX	106151506	106152506	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	8731.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	17.73	22.58	15.72	35.09	30.79	25.72	17.96	20.78	13.74
Merged-chr7-45800694-3	chr7	45800219	45801219	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005511, intron 14 of 15)	intron (NM_001005511, intron 14 of 15)	13597.0	NM_011181	19158.0	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	7.44	4.61	1.85	10.8	3.73	3.22	1.06	3.54	6.25
Merged-chr3-146422004-2	chr3	146421500	146422500	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253770, intron 4 of 13)	L1M2|LINE|L1	17358.0	NM_001355661	99167.0	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	2.86	0.92	1.85	4.72	6.06	3.22	6.34	4.42	4.37
Merged-chr1-72942554-1	chr1	72942054	72943054	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-67689.0	NM_010518	16011.0	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.0	1.38	3.7	6.07	16.33	4.82	2.11	1.33	2.5
Merged-chr12-85963875-2	chr12	85963370	85964370	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	115171.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	22.31	28.11	12.95	64.77	51.32	41.8	15.84	18.57	9.99
Merged-chr15-83166816-3	chr15	83166313	83167313	+	910.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	5395.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	18.31	8.75	9.25	6.75	4.67	7.23	5.28	8.4	5.62
Merged-chr17-7316016-2	chr17	7315535	7316535	+	910.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8625.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	4.58	5.53	0.0	10.8	5.6	4.82	6.34	3.98	5.0
Merged-chr9-59749698-3	chr9	59749168	59750168	+	910.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172069, intron 1 of 2)	intron (NM_001172069, intron 1 of 2)	981.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	161.89	169.57	118.39	151.14	102.17	118.96	147.87	215.34	79.94
Merged-chr13-65101485-3	chr13	65100986	65101986	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	intron (NM_001083901, intron 2 of 12)	11496.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	13.73	15.67	5.55	12.82	11.66	4.82	7.39	7.52	17.49
Merged-chr9-13525872-3	chr9	13525378	13526378	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94111.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	100.11	78.33	61.97	65.45	39.19	49.83	25.35	35.82	30.6
Merged-chr13-35209771-3	chr13	35209261	35210261	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126478)	TTS (NR_126478)	2287.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	6.86	3.23	5.55	5.4	1.87	12.06	8.45	1.77	3.12
Merged-chr10-61134219-3	chr10	61133710	61134710	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009163, intron 2 of 14)	RLTR17|LTR|ERVK	13474.0	NM_009163	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	37.18	44.24	41.62	43.86	38.72	57.87	28.52	44.66	26.85
Merged-chr13-91517161-3	chr13	91516677	91517677	+	910.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	ORR1D2|LTR|ERVL-MaLR	56080.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	24.03	12.9	14.8	15.52	11.2	7.23	7.39	4.42	0.0
Merged-chr11-88203840-3	chr11	88203343	88204343	+	910.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_111902)	promoter-TSS (NR_111902)	-545.0	NM_024174	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	129.86	196.29	105.44	120.1	118.03	127.0	118.29	147.24	66.2
Merged-chr7-126725856-2	chr7	126725352	126726352	+	910.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-21036.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	14.3	10.6	9.25	20.92	17.73	16.88	12.67	13.71	21.86
Merged-chr11-35694885-2	chr11	35694386	35695386	+	910.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 32 of 35)	ORR1G|LTR|ERVL-MaLR	-74609.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	13.16	6.91	12.95	6.75	3.27	8.04	25.35	31.39	16.86
Merged-chr3-123797205-2	chr3	123796702	123797702	+	910.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	-106350.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	4.58	5.07	5.55	8.1	13.06	11.25	2.11	3.1	5.0
Merged-chr12-78918412-3	chr12	78917919	78918919	+	910.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11481.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	4.0	1.84	0.0	6.75	2.33	3.22	2.11	1.33	3.75
Merged-chr1-89078906-3	chr1	89078421	89079421	+	910.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133816, intron 1 of 5)	intron (NM_133816, intron 1 of 5)	8506.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	16.02	16.59	9.25	12.82	4.67	16.08	31.69	20.34	18.74
Merged-chr4-155721783-2	chr4	155721295	155722295	+	910.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 2 of 4)	B2_Mm2|SINE|B2	-13009.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	16.02	12.44	4.62	9.45	9.8	12.86	5.28	9.73	11.24
Merged-chr5-12044752-2	chr5	12044257	12045257	+	910.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126714.0	NM_001177510	545732.0	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	5.15	10.6	13.87	4.05	6.06	17.68	10.56	8.4	6.25
Merged-chr7-142344900-2	chr7	142344413	142345413	+	910.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	L1MD|LINE|L1	27346.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	12.01	9.68	19.42	2.02	2.8	0.0	12.67	5.75	5.0
Merged-chr1-119895154-1	chr1	119894654	119895654	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18014.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	4.0	4.15	1.85	2.7	2.33	3.22	0.0	0.0	1.25
Merged-chr11-116807316-1	chr11	116806816	116807816	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20730.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	32.04	17.51	25.9	20.92	14.0	30.54	2.11	0.0	0.62
Merged-chr8-126917697-1	chr8	126917197	126918197	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28224.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	28.03	23.04	12.95	39.13	21.46	24.92	8.45	8.4	11.24
Merged-chr16-73908654-1	chr16	73908154	73909154	+	910.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 25 of 28)	intron (NM_001358493, intron 25 of 28)	433413.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	2.86	2.3	3.7	4.05	3.27	1.61	2.11	8.84	2.5
Merged-chr1-88586353-3	chr1	88585791	88586791	+	910.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	34774.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	51.48	41.93	32.37	97.83	70.44	68.32	80.27	94.62	48.09
Merged-chr6-126836859-3	chr6	126836365	126837365	+	910.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025358, intron 5 of 10)	RMER6BA|LTR|ERVK	12279.0	NM_025358	66108.0	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	29.17	35.48	37.0	42.51	46.65	43.4	66.54	51.29	47.46
Merged-chr4-124802081-3	chr4	124801583	124802583	+	910.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-466.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	100.11	96.76	111.92	87.04	76.51	98.87	76.05	94.62	89.93
Merged-chr1-106320800-3	chr1	106320304	106321304	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	148935.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	18.88	6.45	9.25	9.45	9.8	8.84	10.56	10.61	5.0
Merged-chr14-30407385-3	chr14	30406903	30407903	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	intron (NM_028981, intron 1 of 46)	-50633.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	18.31	15.21	6.47	15.52	9.8	18.49	21.12	18.13	8.12
Merged-chr3-27234657-3	chr3	27234155	27235155	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	51651.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	32.04	25.34	22.2	39.81	37.79	32.96	43.3	44.66	39.35
Merged-chr5-90682049-3	chr5	90681551	90682551	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41524.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	9.15	10.6	9.25	14.84	11.66	6.43	10.56	4.86	7.49
Merged-chr11-116782820-3	chr11	116782332	116783332	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7325.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	74.94	50.69	22.2	62.75	51.32	35.37	9.51	6.63	11.24
Merged-chr15-66846077-3	chr15	66845549	66846549	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 45 of 47)	intron (NM_009375, intron 45 of 47)	-14220.0	NM_009192	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	73.79	82.48	73.07	90.41	73.24	112.53	72.88	95.95	42.47
Merged-chr7-114194992-3	chr7	114194503	114195503	+	910.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	59677.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	37.18	27.65	32.37	47.9	23.33	26.53	62.31	73.84	21.23
Merged-chr2-129311736-3	chr2	129311227	129312227	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1755.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	38.33	35.48	31.45	55.33	23.33	46.62	30.63	14.59	24.36
Merged-chr15-94566068-3	chr15	94565573	94566573	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 10 of 11)	ORR1D2|LTR|ERVL-MaLR	22413.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	11.44	10.6	12.95	4.05	13.53	16.08	12.67	13.27	8.74
Merged-chr16-78235894-3	chr16	78235395	78236395	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19559.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	20.02	7.83	9.25	35.09	15.39	8.04	11.62	19.01	11.87
Merged-chr5-114594870-3	chr5	114594350	114595350	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	26599.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	21.17	17.97	20.35	27.66	34.06	45.01	31.69	31.39	19.98
Merged-chr19-6074089-3	chr19	6073584	6074584	+	910.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081041, intron 2 of 9)	intron (NM_001081041, intron 2 of 9)	3103.0	NM_001081041	68505.0	Mm.227361	NM_001081041	ENSMUSG00000024799	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	105.26	96.76	102.67	109.3	81.64	106.1	84.49	126.46	59.95
Merged-chr3-81262969-2	chr3	81262462	81263462	+	910.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	226546.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.29	3.23	3.7	3.37	3.27	1.61	6.34	1.77	3.75
Merged-chrX-96133486-3	chrX	96132995	96133995	+	910.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	37450.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	24.6	42.85	18.5	19.57	19.13	27.33	16.9	34.05	12.49
Merged-chr17-24692589-3	chr17	24692085	24693085	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023040)	TTS (NM_023040)	-2636.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	16.59	14.28	18.5	12.82	11.2	22.51	12.67	19.46	14.99
Merged-chr17-23676050-3	chr17	23675549	23676549	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181821)	TTS (NM_181821)	1400.0	NM_001161746	27279.0	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	37.76	31.79	39.77	35.09	28.46	19.29	35.91	32.72	34.35
Merged-chr3-105789991-3	chr3	105789480	105790480	+	910.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	MTD|LTR|ERVL-MaLR	11401.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	30.89	29.03	33.3	26.31	26.59	15.27	41.19	29.63	29.35
Merged-chr7-121281064-2	chr7	121280567	121281567	+	910.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111229.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	15.45	21.66	12.02	45.21	34.06	56.27	27.46	27.41	33.1
Merged-chr10-6916732-3	chr10	6916259	6917259	+	910.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001170802)	TTS (NM_001170802)	63522.0	NM_001347225	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	13.73	13.36	12.02	12.14	12.6	11.25	5.28	5.31	5.0
Merged-chr3-58362767-3	chr3	58362277	58363277	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-51943.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.29	5.07	3.7	4.05	1.4	4.02	3.17	3.1	3.75
Merged-chr9-47727271-3	chr9	47726734	47727734	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	90974.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	98.97	95.84	53.65	109.98	68.58	62.7	90.83	99.49	64.95
Merged-chr17-51833077-3	chr17	51832580	51833580	+	910.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009122)	promoter-TSS (NM_009122)	210.0	NM_001163632	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	9.15	1.84	1.85	6.07	0.93	1.61	6.34	1.77	2.5
Merged-chr4-141617490-3	chr4	141616994	141617994	+	910.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151462, intron 2 of 5)	intron (NR_151462, intron 2 of 5)	1139.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	67.5	18.89	5.55	44.53	20.53	10.45	34.85	20.34	10.62
Merged-chr4-130549311-3	chr4	130548819	130549819	+	910.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025998, intron 1 of 6)	(A)n|Simple_repeat|Simple_repeat	24717.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	5.15	5.07	1.85	2.02	0.0	2.41	4.22	0.88	5.62
Merged-chr15-93252078-2	chr15	93251584	93252584	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23095.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	139.01	143.3	103.59	80.97	66.24	62.7	48.58	57.48	34.97
Merged-chr16-92853798-1	chr16	92853298	92854298	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27724.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	13.16	9.68	12.95	7.42	11.66	17.68	4.22	11.05	2.5
Merged-chr10-14178936-1	chr10	14178436	14179436	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212557.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.01	13.82	12.95	12.14	14.46	12.06	6.34	4.86	11.24
Merged-chrX-150459195-3	chrX	150458673	150459673	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164683)	promoter-TSS (NM_001164683)	-23.0	NR_152724	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	11.44	15.21	7.4	17.54	12.13	16.08	20.07	22.99	11.87
Merged-chr3-86961319-1	chr3	86960819	86961819	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-25267.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	6.29	4.15	0.0	35.09	32.66	16.88	3.17	5.75	3.75
Merged-chr11-6188069-1	chr11	6187569	6188569	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	12382.0	NM_173748	209586.0	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	10.3	5.07	3.7	4.05	2.33	4.02	6.34	1.33	8.12
Merged-chr10-79802580-3	chr10	79802090	79803090	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	MIR|SINE|MIR	9018.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	8.58	8.29	14.8	9.45	10.26	8.04	28.52	28.3	19.98
Merged-chr3-65319477-1	chr3	65318977	65319977	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289450, exon 9 of 15)	exon (NM_001289450, exon 9 of 15)	-16792.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	42.9	44.24	35.15	23.62	33.12	30.54	36.97	64.56	31.85
Merged-chr18-67769844-3	chr18	67769337	67770337	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-5039.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	21.74	20.74	29.6	10.12	9.8	14.47	38.02	45.99	26.85
Merged-chr8-26612347-1	chr8	26611847	26612847	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212076.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	8.58	5.07	11.1	4.72	2.8	6.43	1.06	1.77	2.5
Merged-chr1-59899872-1	chr1	59899372	59900372	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13134.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	9.72	6.45	3.7	4.72	10.26	1.61	11.62	6.63	3.75
Merged-chr1-138145752-3	chr1	138145240	138146240	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	29386.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	43.48	34.1	24.05	32.39	24.72	25.72	33.8	23.88	24.36
Merged-chr3-132154428-1	chr3	132153928	132154928	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	69136.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	8.01	10.6	12.95	12.82	14.46	12.06	14.79	11.5	13.74
Merged-chr4-59471538-1	chr4	59471038	59472038	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178164)	TTS (NM_178164)	-32905.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	17.16	22.12	12.95	20.24	17.26	13.66	6.34	18.57	9.37
Merged-chr11-50369642-2	chr11	50369152	50370152	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8067.0	NM_021510	59013.0	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	9.15	7.83	0.92	12.82	3.73	15.27	10.56	2.65	2.5
Merged-chr15-58616247-1	chr15	58615747	58616747	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	200779.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	78.94	79.25	55.5	91.76	83.04	49.03	68.65	84.45	32.48
Merged-chr4-8788810-1	chr4	8788310	8789310	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 2 of 36)	intron (NM_001355382, intron 2 of 36)	37486.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	1.72	1.38	0.92	4.72	5.13	3.22	3.17	3.1	2.5
Merged-chr10-44024945-1	chr10	44024445	44025445	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20099.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.15	2.3	5.55	7.42	3.73	4.82	3.17	0.88	5.0
Merged-chr1-135430165-1	chr1	135429665	135430665	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357578, intron 1 of 24)	CpG	326.0	NM_153774	226432.0	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9	importin 9	protein-coding	87.52	72.34	77.7	59.38	70.44	66.71	86.61	61.02	40.59
Merged-chr6-116416392-1	chr6	116415892	116416892	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 7 of 13)	ORR1E|LTR|ERVL-MaLR	44786.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	14.87	2.76	12.95	8.1	11.2	12.86	6.34	3.54	7.49
Merged-chr11-31817660-1	chr11	31817160	31818160	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_102310)	TTS (NR_102310)	6887.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	4.58	4.15	8.32	24.29	19.13	19.29	6.34	1.77	1.25
Merged-chr9-85458575-2	chr9	85458060	85459060	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131410.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	8.58	3.69	3.7	5.4	4.67	0.8	1.06	2.21	1.25
Merged-chr3-41743640-3	chr3	41743056	41744056	+	910.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291048, intron 1 of 4)	intron (NM_001291048, intron 1 of 4)	938.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	102.97	179.71	108.22	116.05	108.7	95.65	195.39	263.09	96.18
Merged-chr2-144452847-1	chr2	144452347	144453347	+	910.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6433.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	4.58	2.76	6.47	8.1	2.8	1.61	2.11	2.21	3.75
Merged-chr5-137072747-1	chr5	137072247	137073247	+	910.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	2.29	5.07	12.95	13.49	6.53	9.65	12.67	14.59	8.12
Merged-chr1-90998666-4	chr1	90998188	90999188	+	909.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111312)	promoter-TSS (NM_001111312)	-39.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	97.25	85.71	51.8	114.03	71.38	75.56	108.79	76.49	38.1
Merged-chr13-60612340-3	chr13	60611829	60612829	+	909.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	10118.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	32.04	24.42	27.75	15.52	12.13	28.94	5.28	9.29	21.86
Merged-chr19-44313304-3	chr19	44312820	44313820	+	909.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	10149.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	36.61	29.49	28.67	44.53	18.66	52.25	34.85	52.18	31.23
Merged-chr17-65612690-3	chr17	65612202	65613202	+	909.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	CpG	853.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	156.17	149.75	149.84	165.98	129.22	151.92	184.83	142.82	124.91
Merged-chr2-125788460-3	chr2	125787944	125788944	+	909.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5574.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	32.04	58.52	72.15	44.53	27.99	47.42	30.63	42.89	51.21
Merged-chr3-22091269-3	chr3	22090774	22091774	+	909.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	14622.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	37.18	52.53	40.7	47.9	33.12	23.31	42.25	32.28	20.61
Merged-chr16-91841633-3	chr16	91841153	91842153	+	909.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	89977.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	251.13	179.25	151.69	278.66	200.13	143.88	220.74	263.09	82.44
Merged-chr13-113913822-3	chr13	113913262	113914262	+	909.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119254.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	58.35	36.86	20.35	136.29	166.54	65.11	154.2	167.58	111.17
Merged-chr2-84113804-3	chr2	84113290	84114290	+	909.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172564.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	9.72	9.22	5.55	7.42	11.2	8.04	1.06	8.84	1.87
Merged-chrX-155247881-3	chrX	155247371	155248371	+	909.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14572.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	112.12	123.95	64.75	141.69	109.63	71.54	137.3	198.53	59.33
Merged-chr7-101369091-1	chr7	101368591	101369591	+	909.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 2 of 33)	MTD|LTR|ERVL-MaLR	-9031.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	22.88	22.58	23.12	24.96	24.26	37.78	13.73	12.38	18.74
Merged-chr11-98193142-5	chr11	98192604	98193604	+	909.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013634)	promoter-TSS (NM_013634)	189.0	NM_134027	19014.0	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|TRIP-2|l11Jus15	mediator complex subunit 1	protein-coding	140.15	100.45	107.29	95.81	80.71	102.88	124.63	129.11	66.82
Merged-chr3-144048054-3	chr3	144047541	144048541	+	909.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154291.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.58	4.61	1.85	8.77	5.6	4.82	8.45	1.33	3.75
Merged-chr17-8283129-3	chr17	8282628	8283628	+	909.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018819)	promoter-TSS (NM_018819)	-685.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	97.25	138.24	126.72	125.5	126.42	117.35	153.15	145.47	61.83
Merged-chr17-33865628-3	chr17	33865153	33866153	+	909.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21080.0	NR_128569	104796139.0		NR_128569	ENSMUSG00000098621	Gm27740	Mir6967-2|mmu-mir-6967-2	predicted gene, 27740	ncRNA	15.45	7.83	4.62	13.49	7.46	6.43	13.73	4.42	3.75
Merged-chr18-76326620-2	chr18	76326119	76327119	+	909.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64174.0	NM_001311070	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	14.87	5.07	5.55	12.82	7.93	14.47	11.62	0.88	5.0
Merged-chrX-167338159-3	chrX	167337663	167338663	+	909.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-7592.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	19.45	22.58	7.4	32.39	11.2	17.68	11.62	14.15	13.74
Merged-chrX-12160076-3	chrX	12159545	12160545	+	909.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	301.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	125.85	98.15	96.2	115.38	119.43	77.97	138.36	96.39	83.06
Merged-chr7-90215400-3	chr7	90214886	90215886	+	909.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	50046.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	14.3	6.91	5.55	19.57	16.33	12.06	14.79	17.69	13.74
Merged-chr5-72656795-1	chr5	72656295	72657295	+	909.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081205, intron 1 of 5)	intron (NM_001081205, intron 1 of 5)	8999.0	NM_001081205	70701.0	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	13.73	16.59	17.57	22.94	26.12	31.35	19.01	19.01	11.87
Merged-chr7-38167941-3	chr7	38167434	38168434	+	909.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15283.0	NM_001085385	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	1.72	2.3	0.0	2.7	2.33	3.22	1.06	2.65	1.25
Merged-chr5-75156327-3	chr5	75155844	75156844	+	909.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001083316, exon 1 of 23)	5' UTR (NM_001083316, exon 1 of 23)	178.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	4.0	1.38	1.85	6.07	2.33	3.22	1.06	0.44	8.74
Merged-chr4-151999649-3	chr4	151999150	152000150	+	909.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	26.31	26.26	18.5	21.59	19.59	33.76	22.18	26.09	24.98
Merged-chr19-3767921-4	chr19	3767495	3768495	+	909.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167889, intron 1 of 10)	CpG	574.0	NM_001167885	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	246.56	299.97	324.66	226.03	253.31	280.52	277.78	243.19	201.1
Merged-chr2-90478307-3	chr2	90477813	90478813	+	909.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L1MB5|LINE|L1	861.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	98.97	70.04	50.87	128.2	75.11	108.51	59.15	57.92	53.08
Merged-chr11-94405438-1	chr11	94404938	94405938	+	909.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12462.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	8.01	0.92	1.85	23.62	6.53	15.27	6.34	2.21	1.25
Merged-chr10-20879716-2	chr10	20879223	20880223	+	909.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72824.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	7.44	3.23	5.55	4.72	3.73	1.61	7.39	5.75	0.0
Merged-chr10-66857459-3	chr10	66856937	66857937	+	909.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62947.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	17.73	6.91	16.65	22.27	10.26	8.84	12.67	6.63	6.25
Merged-chr7-24300968-3	chr7	24300447	24301447	+	909.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199321)	TTS (NM_001199321)	-1398.0	NM_009561	22719.0	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	12.01	5.53	12.02	6.75	9.33	27.33	14.79	5.31	19.36
Merged-chr16-93888646-3	chr16	93888098	93889098	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028083, intron 5 of 13)	ORR1D1|LTR|ERVL-MaLR	4697.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	4.0	3.23	10.17	7.42	3.73	19.29	35.91	34.05	31.23
Merged-chr12-40271397-3	chr12	40270897	40271897	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	48033.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	5.15	6.91	7.4	12.14	7.0	8.04	6.34	6.19	5.0
Merged-chr9-107296169-3	chr9	107295665	107296665	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-494.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	30.32	19.81	5.55	25.64	12.13	5.63	48.58	28.74	14.99
Merged-chr1-64134640-3	chr1	64134163	64135163	+	909.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	-13274.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	17.16	11.52	11.1	21.59	9.8	8.84	32.74	26.97	13.74
Merged-chr10-77517205-3	chr10	77516692	77517692	+	909.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1379.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	41.19	40.55	18.5	34.41	26.12	33.76	44.36	26.09	24.36
Merged-chr2-58167862-2	chr2	58167365	58168365	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045895, intron 2 of 3)	intron (NR_045895, intron 2 of 3)	3891.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	0.0	0.0	0.0	6.07	4.67	8.04	5.28	6.63	9.37
Merged-chr1-149955677-3	chr1	149955173	149956173	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	5617.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	42.33	64.05	48.1	45.21	57.38	40.99	50.7	60.58	41.22
Merged-chr7-137609987-2	chr7	137609485	137610485	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	172311.0	NR_033611	620016.0	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	-	glutaredoxin 3 pseudogene	pseudo	6.29	4.61	1.85	8.1	4.67	6.43	1.06	0.88	2.5
Merged-chr7-90054996-3	chr7	90054499	90055499	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25840.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	22.88	18.89	13.87	33.06	19.59	21.7	38.02	34.49	28.73
Merged-chr16-58686331-1	chr16	58685831	58686831	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16123.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	17.16	14.75	11.1	13.49	18.19	20.9	15.84	18.13	9.99
Merged-chr2-143035563-2	chr2	143035080	143036080	+	909.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27489.0	NM_021335	20639.0	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	33.75	48.38	35.15	68.15	69.51	47.42	44.36	72.52	34.97
Merged-chr15-59799297-1	chr15	59798797	59799797	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-4338.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	16.59	12.44	9.25	16.87	20.53	14.47	11.62	11.5	13.74
Merged-chr14-22817553-1	chr14	22817053	22818053	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-274755.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	5.15	4.15	11.1	12.82	7.46	6.43	2.11	2.21	1.25
Merged-chr6-146668703-1	chr6	146668203	146669203	+	909.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11485.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.86	3.69	2.77	14.84	9.8	8.04	12.67	4.86	2.5
Merged-chr2-165947782-3	chr2	165947298	165948298	+	909.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44839.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	195.07	182.47	114.69	267.86	194.07	188.09	219.69	290.06	104.3
Merged-chr5-147957228-3	chr5	147956724	147957724	+	909.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029920)	promoter-TSS (NM_029920)	-96.0	NM_001359503	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	2.86	2.3	3.7	0.0	3.27	1.61	1.06	1.77	3.12
Merged-chr4-47234982-3	chr4	47234417	47235417	+	909.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 2 of 39)	intron (NM_009928, intron 2 of 39)	26905.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	2.86	5.53	0.0	2.02	5.6	1.61	11.62	1.77	11.24
Merged-chr2-164007100-3	chr2	164006600	164007600	+	909.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018753, intron 1 of 5)	RLTR26B_MM|LTR|ERVK	11903.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	21.17	17.51	18.5	22.94	29.86	26.53	27.46	14.15	4.37
Merged-chr16-91411010-3	chr16	91410518	91411518	+	909.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	4783.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	52.06	59.9	51.8	89.06	61.58	83.59	98.23	97.72	46.22
Merged-chr16-30066675-7	chr16	30066182	30067182	+	909.392883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008235, intron 3 of 3)	CpG	1325.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	93.82	107.36	83.25	126.85	119.89	114.14	122.52	120.71	78.07
Merged-chr10-78160144-3	chr10	78159652	78160652	+	909.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9616.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	18.88	17.51	16.65	18.22	9.33	20.9	16.9	17.24	11.24
Merged-chr4-115731769-3	chr4	115731267	115732267	+	909.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6306.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	2.86	3.69	0.0	4.05	2.33	3.22	3.17	0.44	4.37
Merged-chr10-84286320-3	chr10	84285807	84286807	+	909.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154164.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	8.01	6.91	2.77	7.42	6.06	6.43	10.56	3.54	5.0
Merged-chr11-111210733-3	chr11	111210241	111211241	+	909.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144577.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	4.58	4.61	1.85	4.05	1.87	4.82	8.45	0.44	1.25
Merged-chr1-64933144-2	chr1	64932637	64933637	+	909.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23687.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	4.58	4.15	7.4	9.45	6.53	9.65	11.62	4.42	1.25
Merged-chr3-127895857-3	chr3	127895363	127896363	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	460.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	45.76	58.52	68.45	78.27	61.58	73.14	80.27	69.42	51.84
Merged-chr6-120903683-3	chr6	120903224	120904224	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	13100.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	9.72	4.61	0.0	5.4	7.0	10.45	4.22	4.86	4.37
Merged-chr1-127976719-3	chr1	127976212	127977212	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	107939.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	42.33	60.82	37.92	82.99	68.58	46.62	77.1	115.41	52.46
Merged-chr19-5512376-3	chr19	5511841	5512841	+	909.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1824.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	271.73	230.39	137.82	193.64	137.62	129.41	152.09	242.75	114.91
Merged-chr13-45693689-3	chr13	45693182	45694182	+	909.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	186238.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	18.88	13.82	6.47	16.19	15.86	12.86	17.96	13.27	13.12
Merged-chr5-118647606-3	chr5	118647125	118648125	+	909.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	86906.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	22.31	8.75	11.1	18.22	12.6	19.29	5.28	18.57	9.37
Merged-chr19-29708246-3	chr19	29707764	29708764	+	909.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029993)	TTS (NM_029993)	10323.0	NM_029993	77836.0	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	2.86	3.23	3.7	6.75	5.6	6.43	8.45	4.42	6.25
Merged-chr10-20590292-3	chr10	20589801	20590801	+	909.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-41973.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	25.17	24.42	12.95	29.69	13.53	20.9	13.73	21.22	9.37
Merged-chr5-75874703-1	chr5	75874203	75875203	+	909.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103725.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	10.3	7.37	9.25	16.87	13.53	28.13	2.11	3.54	5.0
Merged-chr11-116827991-3	chr11	116827412	116828412	+	909.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026280, exon 1 of 4)	exon (NM_026280, exon 1 of 4)	134.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	22.88	3.69	14.8	16.19	10.73	19.29	0.0	1.77	1.25
Merged-chrX-101907416-3	chrX	101906891	101907891	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	58006.0	NM_001163610	100042480.0	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|Gm10456	NHS-like 2	protein-coding	2.29	2.76	0.0	0.67	3.27	1.61	3.17	3.1	3.75
Merged-chr1-72212270-3	chr1	72211775	72212775	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357488)	promoter-TSS (NM_001357488)	32.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	10.3	5.99	1.85	6.75	2.8	4.82	4.22	3.1	1.25
Merged-chr2-154220117-3	chr2	154219623	154220623	+	909.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012392, intron 15 of 15)	intron (NM_001012392, intron 15 of 15)	-3619.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	4.58	4.15	1.85	8.1	8.86	8.04	8.45	7.07	2.5
Merged-chr9-109058344-4	chr9	109057879	109058879	+	909.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026381)	TTS (NM_026381)	872.0	NM_001012236	22040.0	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	121.28	152.06	135.97	91.09	75.11	106.1	118.29	159.62	109.92
Merged-chr8-25448128-3	chr8	25447622	25448622	+	909.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-70637.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	4.58	14.28	5.55	24.96	14.46	24.92	12.67	5.31	12.49
Merged-chr19-5727978-3	chr19	5727544	5728544	+	909.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181452)	TTS (NM_181452)	1622.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	28.03	24.42	20.35	22.94	18.66	36.97	34.85	32.28	36.22
Merged-chr11-11689097-3	chr11	11688608	11689608	+	909.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	-1069.0	NM_001301865	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	76.08	118.88	66.6	65.45	62.51	57.87	80.27	84.45	56.21
Merged-chr8-108730099-3	chr8	108729598	108730598	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	15454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	24.6	29.03	23.12	22.94	19.59	21.7	19.01	22.11	11.87
Merged-chr2-152707730-3	chr2	152707187	152708187	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159551, exon 13 of 13)	3' UTR (NM_001159551, exon 13 of 13)	20539.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	48.05	46.08	45.32	49.93	48.05	40.19	58.09	49.08	38.1
Merged-chr9-61946054-3	chr9	61945584	61946584	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024245, intron 1 of 22)	intron (NM_024245, intron 1 of 22)	715.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	50.91	83.4	49.95	36.43	43.39	24.92	40.14	34.93	30.6
Merged-chr18-34538347-3	chr18	34537844	34538844	+	909.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3984.0	NM_009290	20890.0	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	4.0	4.61	0.0	8.1	1.4	0.0	5.28	2.21	3.75
Merged-chr3-148988628-1	chr3	148988128	148989128	+	909.142883	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33993.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.01	3.69	2.77	23.62	15.86	14.47	4.22	2.65	1.25
Merged-chr4-106429336-3	chr4	106428852	106429852	+	909.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183225, intron 62 of 67)	intron (NM_183225, intron 62 of 67)	34973.0	NM_153565	100102.0	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	16.02	7.83	15.72	20.92	6.06	21.7	4.22	8.84	3.75
Merged-chr4-108405954-2	chr4	108405462	108406462	+	909.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024198, intron 1 of 2)	intron (NM_024198, intron 1 of 2)	751.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	32.04	33.18	37.0	37.78	36.39	45.01	71.82	68.98	58.71
Merged-chr15-36695776-3	chr15	36695277	36696277	+	909.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-86804.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	15.45	12.9	0.0	22.27	7.0	12.86	19.01	8.4	5.62
Merged-chr5-100624999-3	chr5	100624486	100625486	+	909.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49270.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	16.59	5.07	11.1	14.17	11.2	17.68	23.24	10.61	23.73
Merged-chr15-59041800-3	chr15	59041279	59042279	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	40247.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	22.88	14.28	11.1	31.04	16.33	9.65	13.73	7.52	11.87
Merged-chr3-65680776-3	chr3	65680269	65681269	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037923, intron 2 of 2)	intron (NM_001037923, intron 2 of 2)	14541.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	2.86	5.07	0.92	4.05	4.2	3.22	7.39	1.33	0.0
Merged-chr1-191964357-3	chr1	191963839	191964839	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-13031.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	13.16	8.29	3.7	11.47	6.06	6.43	6.34	2.65	3.75
Merged-chr5-53997064-3	chr5	53996562	53997562	+	909.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1461.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	12.59	11.52	9.25	6.07	9.33	9.65	21.12	11.94	8.74
Merged-chr5-42978586-2	chr5	42978087	42979087	+	909.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-254876.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	7.44	4.15	4.62	6.75	3.27	1.61	1.06	3.98	3.75
Merged-chr4-129821441-3	chr4	129820910	129821910	+	909.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	702.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	297.47	321.63	197.02	250.99	218.79	135.84	284.11	306.42	121.16
Merged-chr11-107417412-3	chr11	107416919	107417919	+	909.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	53301.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	54.92	70.96	69.37	68.82	55.05	79.58	80.27	77.82	44.97
Merged-chr5-115327725-3	chr5	115327220	115328220	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036616, intron 1 of 4)	CpG	543.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	148.73	104.6	145.22	145.74	86.3	157.54	130.97	92.86	126.15
Merged-chr1-45860596-3	chr1	45860098	45861098	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64996.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	77.8	158.05	74.92	108.63	115.69	100.47	122.52	143.7	94.93
Merged-chr6-128850105-3	chr6	128849620	128850620	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001254946, exon 3 of 3)	exon (NM_001254946, exon 3 of 3)	-23805.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	18.88	6.45	0.0	17.54	9.8	7.23	7.39	4.86	12.49
Merged-chr5-64289421-3	chr5	64288906	64289906	+	909.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59049.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	22.31	19.81	16.65	19.57	22.86	27.33	12.67	15.48	9.99
Merged-chrX-102115903-3	chrX	102115408	102116408	+	909.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3557.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	6.86	5.07	3.7	10.8	7.0	6.43	11.62	12.82	9.99
Merged-chr17-21449876-3	chr17	21449364	21450364	+	909.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	-510.0	NM_001308323	22709.0	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	36.61	35.48	35.15	33.06	22.86	40.99	47.53	44.66	31.85
Merged-chr19-32681089-3	chr19	32680597	32681597	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026487, intron 8 of 9)	intron (NM_026487, intron 8 of 9)	31201.0	NM_026487	67979.0	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	40.04	53.91	12.95	36.43	43.39	14.47	54.92	76.05	21.86
Merged-chr7-38214777-1	chr7	38214277	38215277	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	13217.0	NM_024413	72287.0	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	1.14	2.3	5.55	10.8	3.73	16.08	5.28	0.88	3.12
Merged-chr1-65111133-2	chr1	65110613	65111613	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	RLTR33|LTR|ERVK	-7750.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	9.15	20.27	11.1	12.82	12.6	16.08	20.07	23.88	17.49
Merged-chr4-59454239-1	chr4	59453739	59454739	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15606.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	20.02	21.66	15.72	12.82	17.26	24.11	7.39	7.52	14.36
Merged-chr1-54927519-3	chr1	54926993	54927993	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1106.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	16.02	18.89	14.8	22.94	13.53	24.11	9.51	12.38	12.49
Merged-chr5-66174697-1	chr5	66174197	66175197	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040695, intron 2 of 2)	intron (NR_040695, intron 2 of 2)	16638.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	9.72	11.52	7.4	12.14	14.93	9.65	2.11	0.88	1.25
Merged-chr17-80997388-2	chr17	80996894	80997894	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026516, intron 3 of 3)	intron (NM_026516, intron 3 of 3)	52762.0	NM_026516	68027.0	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	3.43	1.84	16.65	2.7	6.06	4.82	9.51	11.5	5.0
Merged-chr18-55238322-2	chr18	55237806	55238806	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-245715.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.15	5.99	11.1	10.12	18.19	26.53	23.24	16.8	25.61
Merged-chr9-77966421-1	chr9	77965921	77966921	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49056.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.0	2.3	2.77	3.37	1.4	4.82	6.34	1.77	1.25
Merged-chr11-114996857-2	chr11	114996260	114997260	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_134158)	TTS (NM_134158)	5120.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	22.88	14.28	32.37	18.89	13.53	27.33	25.35	14.15	16.24
Merged-chr10-80329455-1	chr10	80328955	80329955	+	909.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008793)	promoter-TSS (NM_008793)	18.0	NM_008793	18551.0	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	4.0	4.61	3.7	12.14	4.67	1.61	5.28	2.21	8.74
Merged-chr14-50824297-3	chr14	50823773	50824773	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009351, exon 55 of 55)	exon (NM_009351, exon 55 of 55)	16357.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	12.59	22.58	37.92	23.62	12.13	32.96	60.2	59.25	58.71
Merged-chr3-142528641-1	chr3	142528141	142529141	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	14.3	13.82	15.72	6.07	6.06	11.25	10.56	11.05	8.74
Merged-chr15-84923876-2	chr15	84923394	84924394	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016714, intron 1 of 7)	CpG	466.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	266.0	237.3	293.21	236.15	230.46	201.75	276.72	200.74	149.89
Merged-chrUn_JH584304-68208-1	chrUn_JH584304	67708	68708	+	909.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-8519.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	50.7	42.01	0.0
Merged-chr2-115765053-3	chr2	115764551	115765551	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207264, intron 10 of 10)	intron (NM_207264, intron 10 of 10)	126326.0	NR_035476	100316703.0		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	5.15	2.3	1.85	7.42	10.26	9.65	13.73	5.75	8.74
Merged-chr10-26777735-1	chr10	26777235	26778235	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	5223.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	21.74	28.11	25.9	22.27	19.59	18.49	10.56	3.1	7.49
Merged-chr4-32392957-1	chr4	32392457	32393457	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-24478.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	9.15	3.23	5.55	3.37	3.73	3.22	4.22	4.42	0.0
Merged-chr4-59294836-3	chr4	59294336	59295336	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	34785.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.87	8.29	9.25	19.57	13.06	8.84	6.34	8.4	5.0
Merged-chr1-192981961-1	chr1	192981461	192982461	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301370, intron 3 of 8)	intron (NM_001301370, intron 3 of 8)	53814.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	6.29	10.14	11.1	2.02	2.8	1.61	11.62	4.86	8.12
Merged-chr3-8974007-3	chr3	8973523	8974523	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-9877.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	17.16	20.74	24.97	16.19	7.93	28.94	66.54	65.88	38.72
Merged-chr13-28823670-1	chr13	28823170	28824170	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	ID_B1|SINE|B4	61752.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.57	1.84	2.77	15.52	7.93	3.22	2.11	3.98	5.0
Merged-chr18-69415668-3	chr18	69415195	69416195	+	909.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	69535.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	101.83	97.69	26.82	144.39	115.69	138.25	95.06	73.4	69.95
Merged-chr13-89838858-1	chr13	89838358	89839358	+	909.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96346.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	9.15	6.91	9.25	5.4	7.46	15.27	4.22	8.4	11.24
Merged-chr4-87826539-3	chr4	87826043	87827043	+	908.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-20220.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	4.0	4.61	0.0	4.05	2.33	4.82	1.06	7.07	8.74
Merged-chrX-96300526-3	chrX	96300043	96301043	+	908.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7105.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	65.79	102.29	29.6	89.74	76.51	75.56	77.1	109.22	49.34
Merged-chr5-72601263-3	chr5	72600772	72601772	+	908.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31_Mur|LTR|ERVK	-13722.0	NM_001024147	545758.0	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	4.58	2.3	0.0	2.02	5.6	4.82	2.11	0.88	1.25
Merged-chr6-143050375-3	chr6	143049863	143050863	+	908.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362117, intron 11 of 26)	intron (NM_001362117, intron 11 of 26)	49789.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	14.3	21.2	17.57	23.62	29.39	48.23	15.84	23.43	14.36
Merged-chr18-64886686-3	chr18	64886179	64887179	+	908.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	25.74	35.02	32.37	29.69	30.32	41.8	35.91	48.64	45.59
Merged-chr15-102246362-3	chr15	102245829	102246829	+	908.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001042727, exon 1 of 8)	5' UTR (NM_001042727, exon 1 of 8)	171.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	40.04	46.54	66.6	26.31	21.46	47.42	68.65	57.04	43.09
Merged-chr7-132713629-3	chr7	132713148	132714148	+	908.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175268, exon 5 of 5)	3' UTR (NM_175268, exon 5 of 5)	63268.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	44.62	36.86	61.05	72.19	95.17	84.4	40.14	42.89	36.22
Merged-chr11-70874323-3	chr11	70873819	70874819	+	908.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	intron (NM_001291143, intron 2 of 18)	29558.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	68.07	57.6	32.37	79.62	44.32	30.54	59.15	50.41	19.98
Merged-chr16-38131283-2	chr16	38130791	38131791	+	908.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	-42031.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	320.35	332.69	145.22	271.91	244.92	143.88	181.66	248.5	141.14
Merged-chr19-29168157-3	chr19	29167658	29168658	+	908.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32879.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	16.02	30.41	20.35	14.17	13.53	10.45	47.53	34.49	21.23
Merged-chr2-11524035-3	chr2	11523548	11524548	+	908.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-21958.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	8.01	12.9	8.32	12.82	5.6	15.27	17.96	8.4	14.99
Merged-chr17-31834866-2	chr17	31834369	31835369	+	908.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	20935.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	21.74	9.22	10.17	6.07	2.8	0.0	22.18	5.75	4.37
Merged-chr8-13600307-3	chr8	13599799	13600799	+	908.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 4 of 23)	intron (NM_009025, intron 4 of 23)	-37838.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	77.8	70.5	33.3	89.06	54.58	60.28	52.81	42.89	37.47
Merged-chr2-52859232-3	chr2	52858733	52859733	+	908.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	1365.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	63.5	66.35	79.55	100.53	96.57	122.98	98.23	93.3	58.08
Merged-chr2-163676978-3	chr2	163676468	163677468	+	908.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	-17069.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	40.04	29.03	25.9	33.06	29.86	19.29	39.08	38.47	30.6
Merged-chr11-51677976-3	chr11	51677481	51678481	+	908.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10653.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	20.02	5.07	12.95	14.17	10.26	16.08	17.96	11.94	6.25
Merged-chrX-107143405-3	chrX	107142913	107143913	+	908.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5514.0	NM_001122596	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	25.74	22.58	18.5	39.81	35.92	21.7	46.47	42.89	15.61
Merged-chr2-156720135-3	chr2	156719630	156720630	+	908.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042488)	promoter-TSS (NM_001042488)	779.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	173.9	108.75	89.72	123.47	64.38	67.52	154.2	128.67	53.08
Merged-chr2-132018366-2	chr2	132017852	132018852	+	908.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 1 of 10)	intron (NM_175445, intron 1 of 10)	11636.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	38.9	70.96	61.05	70.85	92.84	102.08	60.2	53.94	62.45
Merged-chr7-82744513-2	chr7	82744010	82745010	+	908.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046004, exon 3 of 4)	non-coding (NR_046004, exon 3 of 4)	11134.0	NR_046004	77800.0	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.57	3.69	5.55	4.05	2.8	4.82	4.22	2.21	3.75
Merged-chr1-180432055-3	chr1	180431558	180432558	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081227)	TTS (NM_001081227)	51446.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	5.72	0.46	1.85	3.37	4.2	3.22	5.28	1.77	3.75
Merged-chr19-28777942-3	chr19	28777473	28778473	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-57193.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	46.91	33.64	24.97	32.39	27.99	44.21	33.8	24.32	28.73
Merged-chr11-20899143-3	chr11	20898646	20899646	+	908.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68038.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	15.45	17.51	12.02	20.24	13.53	12.06	13.73	3.54	8.12
Merged-chr10-75586461-3	chr10	75585961	75586961	+	908.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008116)	TTS (NM_008116)	-2920.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	4.0	2.76	0.0	5.4	2.33	1.61	2.11	0.88	6.25
Merged-chr12-12316921-3	chr12	12316426	12317426	+	908.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	MLTR14|LTR|ERV1	54787.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	54.35	59.44	61.05	47.9	43.39	43.4	40.14	32.28	46.84
Merged-chr18-34373565-5	chr18	34373168	34374168	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007874)	promoter-TSS (NM_007874)	-253.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	41.19	47.92	46.25	48.58	48.98	45.01	43.3	34.05	39.97
Merged-chr4-15269792-3	chr4	15269303	15270303	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	3983.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	31.46	39.17	27.75	24.29	30.32	32.15	28.52	17.69	26.23
Merged-chr10-86920818-3	chr10	86920332	86921332	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 30 of 68)	intron (NM_138673, intron 30 of 68)	87110.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	10.3	8.75	11.1	12.82	13.53	12.86	13.73	7.52	4.37
Merged-chr19-21476967-3	chr19	21476478	21477478	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4317.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	6.29	9.22	3.7	13.49	11.66	20.9	4.22	3.54	13.12
Merged-chr15-67714405-3	chr15	67713901	67714901	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	487632.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	7.44	4.15	0.0	17.54	4.2	7.23	5.28	4.86	0.62
Merged-chr17-57105415-3	chr17	57104983	57105983	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009404)	promoter-TSS (NM_009404)	98.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	5.15	1.84	1.85	2.7	0.47	1.61	14.79	12.38	10.62
Merged-chr7-90052393-1	chr7	90051893	90052893	+	908.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	23234.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	4.0	2.3	2.77	5.4	2.8	4.82	7.39	6.63	13.12
Merged-chr4-102930862-3	chr4	102930355	102931355	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 17 of 23)	intron (NM_144906, intron 17 of 23)	-55524.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	16.59	7.83	9.25	15.52	19.13	16.08	6.34	3.98	6.25
Merged-chr2-59121250-3	chr2	59120745	59121745	+	908.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	39438.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	22.88	27.65	29.6	55.33	48.98	25.72	50.7	42.89	26.23
Merged-chr8-128435966-2	chr8	128435464	128436464	+	908.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	76723.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	16.59	20.74	21.27	20.92	14.46	16.88	11.62	11.05	21.86
Merged-chr16-29991285-3	chr16	29990734	29991734	+	908.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12110.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	16.59	17.05	33.3	12.14	25.19	20.9	40.14	32.72	15.61
Merged-chr7-5060311-3	chr7	5059815	5060815	+	908.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290432, exon 6 of 6)	exon (NM_001290432, exon 6 of 6)	-1828.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	53.77	81.56	68.45	41.83	49.92	109.32	68.65	67.21	44.34
Merged-chr12-30282695-2	chr12	30282175	30283175	+	908.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324521, intron 6 of 15)	intron (NM_001324521, intron 6 of 15)	90700.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	6.29	2.76	1.85	10.12	4.67	5.63	0.0	0.44	0.0
Merged-chr14-61052392-3	chr14	61051879	61052879	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-5524.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	5.72	4.61	6.47	2.7	0.93	8.04	5.28	1.77	3.75
Merged-chr5-25010565-3	chr5	25010048	25011048	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-14795.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	6.29	3.23	5.55	7.42	3.73	3.22	6.34	3.98	2.5
Merged-chr10-12997259-3	chr10	12996721	12997721	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11229.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	9.15	3.23	0.0	1.35	0.93	0.0	9.51	2.65	2.5
Merged-chr14-61687891-3	chr14	61687395	61688395	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5522.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	45.19	77.41	29.6	41.16	47.12	35.37	63.37	77.82	29.35
Merged-chr12-8493511-3	chr12	8493002	8494002	+	908.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6507.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	8.01	11.06	19.42	8.1	2.33	8.04	10.56	4.42	5.62
Merged-chr18-20816653-3	chr18	20816161	20817161	+	908.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361188)	TTS (NM_001361188)	-70257.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	32.04	23.5	32.37	22.27	21.46	27.33	16.9	15.92	17.49
Merged-chrX-101770498-3	chrX	101769997	101770997	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-24159.0	NM_001359671	382231.0	Mm.328112	NM_001359671	ENSMUSG00000046774	8030474K03Rik	Gm1142	RIKEN cDNA 8030474K03 gene	protein-coding	6.29	10.14	3.7	4.72	10.73	3.22	6.34	5.75	7.49
Merged-chr9-71160929-3	chr9	71160422	71161422	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	1711.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	5.72	6.45	1.85	4.05	7.93	0.8	7.39	4.86	9.99
Merged-chr2-120663894-3	chr2	120663410	120664410	+	908.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54315.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	33.18	27.65	31.45	32.39	12.6	21.7	17.96	11.5	13.74
Merged-chrX-7308407-3	chrX	7307912	7308912	+	908.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	10946.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	11.44	14.28	20.35	16.87	6.53	18.49	13.73	11.94	19.36
Merged-chr13-63253360-3	chr13	63252855	63253855	+	908.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	13326.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	54.35	72.8	30.52	99.86	107.76	72.34	62.31	48.64	23.73
Merged-chr8-13624983-1	chr8	13624483	13625483	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	52604.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	24.03	23.5	28.67	33.74	40.59	57.87	14.79	16.8	6.25
Merged-chr13-91362109-1	chr13	91361609	91362609	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25976.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	5.72	8.75	6.47	7.42	4.2	10.45	5.28	1.77	3.12
Merged-chr3-40798683-2	chr3	40798185	40799185	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1266.0	NM_173169	20873.0	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo like kinase 4	protein-coding	14.3	6.45	8.32	11.47	6.06	8.04	9.51	4.42	8.74
Merged-chrX-85770933-3	chrX	85770432	85771432	+	908.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 1 of 19)	intron (NM_212444, intron 1 of 19)	5887.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	9.72	11.52	15.72	6.75	14.93	6.43	15.84	19.46	6.87
Merged-chr2-68859879-1	chr2	68859379	68860379	+	908.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1562.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	15.45	9.22	9.25	16.19	13.06	7.23	7.39	8.84	5.0
Merged-chr9-106421960-3	chr9	106421473	106422473	+	908.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7438.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	7.44	4.61	1.85	5.4	1.4	0.0	5.28	3.54	3.75
Merged-chrX-159254750-3	chrX	159254277	159255277	+	908.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	52.06	40.09	37.92	69.5	50.38	45.82	69.71	46.43	49.34
Merged-chr15-76239275-3	chr15	76238773	76239773	+	908.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163576, intron 8 of 9)	intron (NM_001163576, intron 8 of 9)	4167.0	NM_001163576	671535.0	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	2.86	4.61	3.7	8.1	2.8	3.22	2.11	1.33	8.74
Merged-chr11-100356245-3	chr11	100355764	100356764	+	908.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177981)	promoter-TSS (NM_177981)	-123.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	76.66	99.07	65.67	99.18	99.37	98.06	70.76	102.58	58.08
Merged-chr6-119444326-3	chr6	119443852	119444852	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 3 of 4)	intron (NM_009525, intron 3 of 4)	5034.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	4.58	2.3	5.55	6.07	1.4	4.82	3.17	0.44	2.5
Merged-chr14-106155351-3	chr14	106154861	106155861	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49163.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	7.44	9.68	9.25	8.77	7.46	3.22	9.51	4.42	6.25
Merged-chr7-83878361-3	chr7	83877849	83878849	+	908.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5992.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	40.04	52.99	77.7	43.18	27.06	23.31	51.75	54.83	33.72
Merged-chr9-37245752-3	chr9	37245222	37246222	+	908.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	10016.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	64.64	50.23	65.67	67.47	42.92	59.48	30.63	27.41	22.48
Merged-chr2-4446787-3	chr2	4446293	4447293	+	908.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45817.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	33.75	19.35	12.02	35.09	15.39	18.49	47.53	35.37	24.98
Merged-chr7-49121473-2	chr7	49120947	49121947	+	908.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_154465)	TTS (NR_154465)	40711.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	1.14	1.84	0.92	2.7	4.2	4.82	3.17	0.88	1.25
Merged-chr9-101045937-3	chr9	101045431	101046431	+	908.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-11047.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	13.16	9.22	0.0	16.87	7.0	4.82	10.56	12.82	5.0
Merged-chr7-92675854-2	chr7	92675332	92676332	+	908.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-5920.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	21.74	41.01	36.07	31.04	19.59	47.42	7.39	6.19	5.0
Merged-chr12-82261777-2	chr12	82261278	82262278	+	908.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-49571.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	26.89	22.58	12.02	27.66	22.39	41.8	46.47	53.5	32.48
Merged-chr2-142699490-3	chr2	142698993	142699993	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	201971.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	40.04	38.25	23.12	45.88	37.79	50.64	54.92	50.41	43.72
Merged-chr12-98677604-3	chr12	98677101	98678101	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011877, exon 19 of 19)	3' UTR (NM_011877, exon 19 of 19)	49459.0	NM_001289574	104871.0	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	5.15	4.61	4.62	6.75	4.67	6.43	10.56	2.21	5.0
Merged-chr2-131426636-3	chr2	131426128	131427128	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65234.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	54.92	40.55	25.9	47.9	31.26	49.03	30.63	42.45	21.23
Merged-chr12-72694092-1	chr12	72693592	72694592	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29264.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.57	0.46	1.85	0.67	2.33	1.61	2.11	2.21	1.25
Merged-chr12-16869640-1	chr12	16869140	16870140	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25338.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	49.2	70.5	75.85	50.6	46.18	76.36	29.57	18.13	25.61
Merged-chr1-33964857-1	chr1	33964357	33965357	+	908.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	-46968.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	7.44	4.15	3.7	6.07	4.67	3.22	6.34	3.1	0.62
Merged-chr1-155558231-3	chr1	155557751	155558751	+	908.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028250, exon 1 of 8)	5' UTR (NM_028250, exon 1 of 8)	131.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	20.02	17.05	14.8	37.11	21.46	25.72	32.74	23.88	7.49
Merged-chr17-33943568-4	chr17	33943033	33944033	+	908.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020603, intron 7 of 14)	intron (NM_020603, intron 7 of 14)	2810.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	36.61	18.89	20.35	50.6	36.85	36.97	40.14	35.82	31.85
Merged-chr14-73057012-3	chr14	73056515	73057515	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7901.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	14.3	14.75	6.47	24.29	16.33	14.47	21.12	20.34	13.12
Merged-chr1-172247711-3	chr1	172247195	172248195	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013734, intron 7 of 22)	MER21C|LTR|ERVL	10729.0	NM_013734	27222.0	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	12.59	14.75	9.25	12.14	7.0	3.22	5.28	7.96	11.24
Merged-chr9-21989466-3	chr9	21988990	21989990	+	908.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-37.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	14.87	14.28	12.95	18.89	10.73	15.27	15.84	11.94	10.62
Merged-chr18-12132862-2	chr18	12132361	12133361	+	908.2666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	4011.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	24.6	29.03	40.7	25.64	20.06	33.76	49.64	28.74	33.1
Merged-chr3-154288821-3	chr3	154288323	154289323	+	908.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41737.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	5.72	3.23	1.85	10.12	4.2	12.86	10.56	3.1	4.37
Merged-chr12-39230960-1	chr12	39230460	39231460	+	908.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	447249.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.72	7.37	1.85	3.37	5.13	9.65	3.17	1.33	0.0
Merged-chr5-150176796-1	chr5	150176296	150177296	+	908.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83134.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	6.86	0.92	1.85	2.02	3.73	6.43	5.28	4.42	6.25
Merged-chr17-55754593-3	chr17	55754095	55755095	+	908.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139138, intron 1 of 16)	L1_Mus2|LINE|L1	4611.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	41.19	51.15	73.07	49.25	42.45	109.32	55.98	51.73	54.96
Merged-chr1-80655395-3	chr1	80654906	80655906	+	908.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	9946.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	30.89	30.41	17.57	26.99	15.86	20.09	22.18	21.67	27.48
Merged-chr8-33660757-3	chr8	33660251	33661251	+	908.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	7513.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	19.45	29.03	39.77	33.06	27.06	29.74	134.14	148.57	132.4
Merged-chr17-31081140-1	chr17	31080640	31081640	+	908.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	23446.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	24.03	19.81	33.3	43.18	25.19	47.42	53.87	45.54	16.24
Merged-chr15-25553221-3	chr15	25552714	25553714	+	908.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69336.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	24.6	11.52	23.12	13.49	8.86	4.82	6.34	2.21	2.5
Merged-chr2-4591831-2	chr2	4591323	4592323	+	908.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	MTEb|LTR|ERVL-MaLR	32069.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	20.59	20.27	24.97	26.31	18.66	23.31	24.29	26.09	6.87
Merged-chr10-111774007-2	chr10	111773499	111774499	+	908.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	100377.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	12.01	4.61	5.55	10.12	4.67	7.23	4.22	1.77	9.99
Merged-chr5-134233367-3	chr5	134232881	134233881	+	908.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3756.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	108.12	94.0	62.9	108.63	91.44	130.21	133.08	134.42	64.33
Merged-chr11-115473805-3	chr11	115473290	115474290	+	908.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001080934, exon 4 of 4)	3' UTR (NM_001080934, exon 4 of 4)	-1877.0	NM_177778	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	89.24	81.56	71.22	76.24	50.85	115.75	123.57	97.72	65.58
Merged-chr2-49364083-3	chr2	49363622	49364622	+	908.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-87364.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	18.88	5.53	3.7	12.14	5.6	6.43	13.73	8.4	5.0
Merged-chr6-5167506-3	chr6	5166981	5167981	+	908.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011134)	TTS (NM_011134)	26465.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	26.31	28.11	9.25	22.27	22.86	25.72	16.9	19.46	26.23
Merged-chr5-20881600-3	chr5	20881123	20882123	+	908.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177601)	promoter-TSS (NM_177601)	501.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	41.19	33.18	28.67	59.38	21.46	46.62	52.81	25.2	24.98
Merged-chr7-42642600-3	chr7	42642111	42643111	+	908.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242388)	promoter-TSS (NM_001242388)	-7.0	NM_001242388	208111.0	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	10.3	8.29	10.17	8.1	12.13	9.65	14.79	7.52	9.37
Merged-chr5-38307854-3	chr5	38307346	38308346	+	908.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11663.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	2.29	2.3	7.4	6.07	2.8	1.61	6.34	2.65	2.5
Merged-chr14-70370673-3	chr14	70370166	70371166	+	908.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19242.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	15.45	17.05	13.87	18.22	16.79	14.47	15.84	8.4	15.61
Merged-chr10-13104016-3	chr10	13103506	13104506	+	908.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009538, intron 1 of 5)	intron (NM_009538, intron 1 of 5)	13161.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	7.44	6.91	3.7	6.07	8.4	0.0	2.11	6.63	6.25
Merged-chr11-107378353-3	chr11	107377862	107378862	+	908.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	92358.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	60.07	37.32	51.8	39.13	23.33	48.23	62.31	46.43	45.59
Merged-chr11-23953769-2	chr11	23953258	23954258	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-58488.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	8.01	2.76	3.7	10.8	4.2	4.82	5.28	3.98	6.25
Merged-chr17-57331580-1	chr17	57331080	57332080	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27106.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	17.73	13.82	6.47	22.94	9.8	22.51	31.69	22.11	18.74
Merged-chr16-31080761-1	chr16	31080261	31081261	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	CpG	671.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	18.31	11.06	25.9	20.92	12.13	20.9	19.01	17.24	11.87
Merged-chr18-80169199-2	chr18	80168706	80169706	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17033.0	NR_131039	105246506.0	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	80.09	88.01	74.0	71.52	64.84	92.44	108.79	93.3	78.07
Merged-chr16-5210565-1	chr16	5210065	5211065	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5309.0	NR_105783	102465188.0		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	1.14	4.61	1.85	2.02	1.4	1.61	3.17	3.1	3.75
Merged-chr16-34111419-3	chr16	34110915	34111915	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	L1MB3|LINE|L1	-144377.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	14.3	9.22	12.95	13.49	13.06	10.45	12.67	13.71	13.74
Merged-chr13-58475669-2	chr13	58475158	58476158	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72315.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	8.58	10.6	12.95	13.49	11.66	8.04	9.51	11.05	6.25
Merged-chr7-97148583-1	chr7	97148083	97149083	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	L1MB3|LINE|L1	66832.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	13.16	15.67	20.35	22.94	13.53	18.49	20.07	13.71	17.49
Merged-chr10-21941395-1	chr10	21940895	21941895	+	908.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-37277.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.72	10.6	12.95	11.47	6.06	3.22	11.62	15.48	8.74
Merged-chr9-121313785-3	chr9	121313271	121314271	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	RMER17C|LTR|ERVK	16269.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	202.51	181.09	86.02	230.75	150.22	125.39	168.99	175.54	100.55
Merged-chr1-154036954-3	chr1	154036454	154037454	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137025.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	48.05	36.4	53.65	49.93	26.59	52.25	42.25	26.97	38.72
Merged-chr13-109823876-1	chr13	109823376	109824376	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-79933.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	2.29	1.38	0.0	3.37	4.2	4.82	3.17	0.44	1.25
Merged-chr4-102565767-1	chr4	102565267	102566267	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	MIRb|SINE|MIR	-4293.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	22.31	18.43	21.27	20.24	7.46	7.23	14.79	16.36	27.48
Merged-chr8-11067646-1	chr8	11067146	11068146	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59216.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.43	3.23	7.4	0.67	3.73	4.82	2.11	1.33	1.87
Merged-chr11-32346511-1	chr11	32346011	32347011	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	3.43	4.15	0.0	3.37	2.33	3.22	3.17	1.77	1.25
Merged-chr13-60682929-2	chr13	60682424	60683424	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80713.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	152.17	197.68	138.74	165.31	142.29	131.82	213.35	324.55	137.4
Merged-chr17-47658977-2	chr17	47658475	47659475	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 2 of 6)	intron (NM_198421, intron 2 of 6)	28285.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	13.73	14.28	8.32	22.94	20.99	20.9	13.73	7.96	12.49
Merged-chr13-41437592-1	chr13	41437092	41438092	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	49768.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.01	9.68	1.85	6.07	6.53	15.27	7.39	6.63	8.74
Merged-chr4-150915398-1	chr4	150914898	150915898	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4757.0	NM_011612	21942.0	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	60.07	50.69	40.7	80.97	46.65	49.03	87.66	69.86	36.85
Merged-chr9-88481263-2	chr9	88480764	88481764	+	908.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284328, intron 1 of 11)	intron (NM_001284328, intron 1 of 11)	1133.0	NM_001311113	56403.0	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	60.07	31.33	47.17	68.82	16.33	73.14	45.42	22.11	43.72
Merged-chrX-71396500-1	chrX	71396000	71397000	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313702, intron 12 of 17)	intron (NM_001313702, intron 12 of 17)	31740.0	NM_001313706	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	1.72	3.23	1.85	5.4	3.27	1.61	3.17	3.54	3.75
Merged-chr2-3719602-1	chr2	3719102	3720102	+	908.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	L1_Mus3|LINE|L1	6144.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	8.58	8.75	25.9	7.42	9.33	9.65	8.45	4.42	1.25
Merged-chr6-42350979-3	chr6	42350384	42351384	+	907.962952	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 2 of 9)	intron (NM_001289618, intron 2 of 9)	1056.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	158.46	188.92	113.77	132.92	110.56	95.65	130.97	124.69	124.28
Merged-chr7-143465127-3	chr7	143464586	143465586	+	907.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4036.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	4.58	0.92	4.62	4.72	1.87	6.43	5.28	0.88	2.5
Merged-chr2-60211909-3	chr2	60211405	60212405	+	907.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	1969.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	58.35	45.16	12.95	60.72	44.32	21.7	43.3	49.08	30.6
Merged-chr6-97175917-3	chr6	97175416	97176416	+	907.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081111, exon 2 of 17)	exon (NM_001081111, exon 2 of 17)	3208.0	NM_001081111	232286.0	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	22.88	18.43	23.12	23.62	16.33	24.11	6.34	22.99	28.73
Merged-chrX-71215549-3	chrX	71215026	71216026	+	907.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	intron (NM_001358113, intron 1 of 15)	452.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	99.54	110.59	69.37	87.71	83.04	66.71	107.73	104.79	70.57
Merged-chr11-98948542-3	chr11	98948049	98949049	+	907.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177302, intron 2 of 9)	L1MB8|LINE|L1	8838.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	135.0	65.43	98.97	106.61	69.98	66.71	118.29	97.28	41.22
Merged-chr10-62311606-3	chr10	62311113	62312113	+	907.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 5 of 21)	intron (NM_010438, intron 5 of 21)	28808.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	24.6	15.21	20.35	8.77	8.86	16.08	16.9	20.34	16.24
Merged-chr17-27038435-2	chr17	27037947	27038947	+	907.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9188.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	4.58	0.92	3.7	2.7	4.2	3.22	208.07	180.85	73.69
Merged-chr10-22070380-1	chr10	22069880	22070880	+	907.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2301.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	1.14	0.46	1.85	2.7	0.93	3.22	5.28	3.54	2.5
Merged-chr8-26907720-3	chr8	26907141	26908141	+	907.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69695.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	20.02	34.56	12.95	16.87	26.12	27.33	8.45	6.63	14.99
Merged-chr9-104232161-3	chr9	104231650	104232650	+	907.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 6 of 56)	intron (NM_001359740, intron 6 of 56)	30780.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	32.04	43.31	12.02	53.3	49.45	49.83	85.55	87.99	28.1
Merged-chr17-73029794-1	chr17	73029294	73030294	+	907.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-78191.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.29	8.29	11.1	21.59	7.93	9.65	8.45	5.31	5.0
Merged-chr7-19472611-3	chr7	19472091	19473091	+	907.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14097.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	32.04	32.72	45.32	33.74	15.86	62.7	122.52	95.95	64.95
Merged-chr1-191557335-3	chr1	191556832	191557832	+	907.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305233, intron 9 of 15)	intron (NM_001305233, intron 9 of 15)	18212.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	10.3	9.68	4.62	16.19	17.26	8.04	15.84	24.32	7.49
Merged-chr5-43841509-4	chr5	43840995	43841995	+	907.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009763, intron 8 of 8)	intron (NM_009763, intron 8 of 8)	22602.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	80.66	70.96	54.57	89.06	54.58	65.11	117.24	79.15	41.84
Merged-chr12-106016837-1	chr12	106016337	106017337	+	907.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	6574.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	24.6	28.11	19.42	25.64	23.79	17.68	44.36	19.01	17.49
Merged-chr5-3421055-2	chr5	3420537	3421537	+	907.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 3 of 7)	intron (NM_009873, intron 3 of 7)	77144.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	144.16	128.1	84.17	156.53	117.09	118.16	146.81	158.3	110.54
Merged-chr5-104023727-3	chr5	104023208	104024208	+	907.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1912.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	123.56	155.75	126.72	114.7	84.44	117.35	122.52	109.66	81.81
Merged-chr1-191085167-3	chr1	191084626	191085626	+	907.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_198654)	TTS (NM_198654)	-13288.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	180.2	136.85	103.59	150.46	93.77	94.85	144.7	137.96	81.81
Merged-chr5-130044294-3	chr5	130043778	130044778	+	907.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007761, intron 4 of 5)	intron (NM_007761, intron 4 of 5)	14972.0	NM_007761	12909.0	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	2.86	8.75	1.85	2.7	4.2	4.02	6.34	1.77	7.49
Merged-chr15-82218949-3	chr15	82218457	82219457	+	907.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5423.0	NM_028075	72049.0	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	3.43	7.37	12.95	2.7	4.2	1.61	7.39	4.42	9.99
Merged-chr11-68548614-3	chr11	68548123	68549123	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004435, intron 18 of 19)	intron (NM_001004435, intron 18 of 19)	-7563.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	14.87	12.44	12.95	11.47	8.4	8.04	15.84	9.73	5.0
Merged-chr18-4258421-3	chr18	4257926	4258926	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92594.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	29.75	31.33	22.2	21.59	21.93	34.56	27.46	12.38	16.86
Merged-chr1-186705377-3	chr1	186704893	186705893	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001329107, exon 1 of 8)	5' UTR (NM_001329107, exon 1 of 8)	596.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	10.3	3.69	6.47	9.45	9.8	3.22	5.28	5.31	4.37
Merged-chr10-78096262-3	chr10	78095772	78096772	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26904.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	12.01	17.51	8.32	16.19	14.0	12.86	27.46	19.9	22.48
Merged-chr1-105977647-3	chr1	105977140	105978140	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4a2|LINE|L1	12642.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	77.8	85.25	77.7	92.44	63.45	67.52	144.7	115.41	71.82
Merged-chr11-22969687-3	chr11	22969198	22970198	+	907.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144514, intron 1 of 2)	intron (NM_144514, intron 1 of 2)	-2307.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	7.44	6.45	1.85	7.42	1.87	4.82	6.34	3.1	2.5
Merged-chr11-32455891-3	chr11	32455386	32456386	+	907.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361561, intron 1 of 1)	CpG	516.0	NM_173784	327900.0	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	64.07	52.07	37.92	66.8	42.92	32.96	57.03	31.84	24.36
Merged-chr7-80457471-3	chr7	80456958	80457958	+	907.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 21 of 21)	MIR3|SINE|MIR	-52022.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	20.59	13.36	22.2	15.52	14.0	15.27	17.96	11.94	18.11
Merged-chr10-80623710-3	chr10	80623204	80624204	+	907.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	924.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	155.03	157.13	86.02	158.56	87.7	84.4	160.54	167.58	99.3
Merged-chr2-144714780-3	chr2	144714269	144715269	+	907.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	RMER13B|LTR|ERVK	-108897.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	2.29	3.23	5.55	4.05	1.4	2.41	8.45	4.42	7.49
Merged-chr2-137117559-3	chr2	137117060	137118060	+	907.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-8595	-1040.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	14.87	4.61	7.4	13.49	13.53	6.43	3.17	3.1	3.75
Merged-chr17-87055121-1	chr17	87054621	87055621	+	907.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29560.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	5.15	3.69	0.0	7.42	5.6	6.43	20.07	12.38	11.24
Merged-chr14-54735279-2	chr14	54734787	54735787	+	907.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 5 of 10)	intron (NM_016972, intron 5 of 10)	-23113.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	85.24	73.73	43.47	83.66	50.38	77.16	61.26	70.3	28.1
Merged-chr5-36730886-3	chr5	36730371	36731371	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17808.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	7.44	3.23	9.25	23.62	14.0	12.86	34.85	8.84	9.99
Merged-chr17-5605603-3	chr17	5605094	5606094	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	112994.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	73.22	68.2	66.6	118.08	79.31	81.99	70.76	69.86	50.59
Merged-chr8-116243213-3	chr8	116242706	116243706	+	907.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-261809.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	13.73	12.44	12.95	8.77	14.93	13.66	11.62	18.57	6.25
Merged-chr11-110993302-3	chr11	110992792	110993792	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-4195.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	128.71	158.97	109.14	116.05	85.84	121.37	128.85	162.72	112.42
Merged-chr10-95507020-2	chr10	95506527	95507527	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5078.0	NM_001359477	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	18.88	23.5	30.52	25.64	15.39	25.72	28.52	20.78	16.24
Merged-chr12-105968250-2	chr12	105967703	105968703	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.58	4.15	1.85	5.4	2.8	3.22	3.17	6.63	5.0
Merged-chr16-38679086-2	chr16	38678573	38679573	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	RCHARR1|DNA|hAT-Charlie	33962.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	26.89	27.65	18.5	32.39	37.79	33.76	26.4	54.83	41.84
Merged-chr11-116109698-3	chr11	116109202	116110202	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172570, exon 1 of 6)	exon (NM_172570, exon 1 of 6)	533.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	292.89	229.93	177.59	209.84	153.95	184.87	102.45	115.85	99.3
Merged-chr1-161492258-2	chr1	161491751	161492751	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2406.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	17.16	25.8	14.8	26.31	17.26	11.25	15.84	14.15	8.74
Merged-chr9-96723860-3	chr9	96723362	96724362	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	-4012.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	24.03	15.67	18.5	12.14	14.46	8.04	8.45	12.82	1.87
Merged-chr16-69667943-2	chr16	69667443	69668443	+	907.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132438.0	NR_130991	78110.0	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	Gm43265	RIKEN cDNA 4930428D20 gene	ncRNA	2.29	2.3	3.7	5.4	5.6	1.61	1.06	7.07	4.37
Merged-chr17-65765151-3	chr17	65764652	65765652	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	Lx5|LINE|L1	7600.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	16.02	15.21	18.5	21.59	11.2	16.08	98.23	99.49	53.08
Merged-chr11-75054315-3	chr11	75053804	75054804	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	11687.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	211.09	170.03	133.19	206.46	131.56	184.07	190.11	209.59	96.8
Merged-chr13-23433063-2	chr13	23432562	23433562	+	907.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-2045.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	54.92	82.02	52.72	51.28	36.85	44.21	69.71	92.41	51.84
Merged-chr11-114812895-3	chr11	114812411	114813411	+	907.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13987.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	17.73	5.07	5.55	14.17	2.8	5.63	10.56	3.1	0.0
Merged-chr2-31447692-3	chr2	31447170	31448170	+	907.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22600.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	21.17	18.89	29.6	10.12	7.46	4.82	11.62	16.36	12.49
Merged-chr10-78148145-3	chr10	78147658	78148658	+	907.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21610.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	28.6	30.87	28.67	44.53	28.46	28.94	21.12	19.01	25.61
Merged-chr9-31018367-2	chr9	31017846	31018846	+	907.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12298.0	NM_001115130	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	1.14	3.23	6.47	10.12	7.0	8.84	5.28	7.52	3.75
Merged-chr3-90085536-3	chr3	90085062	90086062	+	907.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	RSINE1|SINE|B4	6041.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	36.61	30.41	19.42	26.99	23.33	18.49	27.46	21.67	24.98
Merged-chr5-29947076-3	chr5	29946506	29947506	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66108.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	47.48	40.09	13.87	62.07	24.72	30.54	69.71	51.73	21.23
Merged-chr10-80995359-3	chr10	80994847	80995847	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	6018.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	12.59	2.76	0.0	8.77	1.4	3.22	2.11	3.1	8.12
Merged-chr9-123942227-3	chr9	123941753	123942753	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26439.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	86.38	75.57	73.07	86.36	69.04	97.26	65.48	57.48	52.46
Merged-chr3-105050045-3	chr3	105049528	105050528	+	907.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	MTD|LTR|ERVL-MaLR	2925.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	43.48	94.0	78.62	41.83	39.19	61.09	82.38	109.66	43.09
Merged-chr14-45075052-3	chr14	45074575	45075575	+	907.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86964.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	38.33	26.26	31.45	29.01	17.73	36.17	33.8	21.67	25.61
Merged-chr18-84274087-3	chr18	84273592	84274592	+	907.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	185934.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	6.29	10.14	9.25	16.87	10.73	16.08	13.73	5.75	9.99
Merged-chr11-115675771-3	chr11	115675273	115676273	+	907.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	23761.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	73.79	56.68	50.87	101.88	55.51	39.39	108.79	89.32	61.2
Merged-chr15-9072364-3	chr15	9071796	9072796	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	1036.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	81.8	73.73	57.35	43.86	46.65	28.13	45.42	46.43	15.61
Merged-chr11-83705433-3	chr11	83704939	83705939	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	1383.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	82.95	84.78	56.42	84.34	86.77	102.08	102.45	103.47	79.32
Merged-chr5-3505760-3	chr5	3505241	3506241	+	907.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-38092.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	17.73	19.35	11.1	22.94	18.66	17.68	21.12	19.9	21.86
Merged-chr3-84598160-3	chr3	84597643	84598643	+	907.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4569.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	5.72	3.69	3.7	3.37	3.27	0.0	6.34	3.1	3.75
Merged-chr17-33746298-2	chr17	33745787	33746787	+	907.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008997, exon 5 of 5)	3' UTR (NM_008997, exon 5 of 5)	14199.0	NM_008997	19326.0	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	4.0	8.75	11.1	10.12	3.73	6.43	8.45	3.1	6.87
Merged-chr2-90903647-1	chr2	90903147	90904147	+	907.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026688, intron 2 of 6)	intron (NM_026688, intron 2 of 6)	1074.0	NM_026688	68349.0	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	36.04	35.48	34.22	16.19	29.86	21.7	21.12	22.11	11.24
Merged-chr5-88553336-3	chr5	88552889	88553889	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1073.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	109.26	110.59	80.47	93.11	79.31	90.02	115.12	104.35	78.69
Merged-chr11-93984794-3	chr11	93984297	93985297	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-11294.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	61.78	63.13	27.75	8.1	6.06	1.61	31.69	30.51	22.48
Merged-chr15-83295105-3	chr15	83294609	83295609	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43335.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	12.59	14.75	20.35	8.77	5.6	4.82	9.51	4.86	3.75
Merged-chr3-38424098-1	chr3	38423598	38424598	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	60718.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	62.93	56.68	56.42	23.62	19.59	27.33	13.73	11.05	11.24
Merged-chr11-89006569-3	chr11	89006065	89007065	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	MLT1J|LTR|ERVL-MaLR	7162.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	17.16	22.12	18.5	24.96	17.73	34.56	22.18	14.15	5.62
Merged-chr4-3779898-3	chr4	3779381	3780381	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	MLT1A0|LTR|ERVL-MaLR	55774.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	29.17	23.5	16.65	22.27	11.2	22.51	20.07	23.88	23.73
Merged-chr11-106648508-3	chr11	106647931	106648931	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35501.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	25.74	39.17	12.02	29.69	30.32	16.08	22.18	21.67	8.74
Merged-chr8-119827160-3	chr8	119826661	119827661	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13418.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	132.14	126.25	138.74	205.11	104.5	160.76	178.5	165.81	101.8
Merged-chr6-101556489-3	chr6	101555996	101556996	+	907.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178599.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	16.02	17.05	15.72	33.06	16.33	18.49	20.07	19.46	9.99
Merged-chr7-138885742-1	chr7	138885242	138886242	+	907.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23764.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	4.0	5.53	9.25	6.07	5.13	5.63	7.39	0.44	1.25
Merged-chr10-89697723-2	chr10	89697222	89698222	+	907.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	11359.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	4.58	6.91	5.55	10.12	7.93	9.65	2.11	1.33	1.87
Merged-chr2-140863686-3	chr2	140863187	140864187	+	907.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-192211.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	7.44	3.23	12.02	7.42	6.06	0.0	3.17	3.54	6.25
Merged-chr1-37903356-3	chr1	37902858	37903858	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12881.0	NM_027098	107734.0	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|L30mt|MRP-L28|MRP-L30|Rpml28	mitochondrial ribosomal protein L30	protein-coding	22.88	29.95	40.7	22.27	15.39	35.37	23.24	31.84	26.23
Merged-chr13-21160858-3	chr13	21160370	21161370	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17815.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	16.59	17.51	12.95	12.14	15.86	8.04	10.56	9.29	5.0
Merged-chr17-12307928-3	chr17	12307423	12308423	+	907.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	10737.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	6.86	5.53	4.62	14.17	6.53	11.25	17.96	8.4	13.74
Merged-chr13-69382965-2	chr13	69382449	69383449	+	907.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150915.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	5.15	8.75	6.47	20.24	14.93	16.08	41.19	48.2	21.23
Merged-chr1-86470698-3	chr1	86470180	86471180	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44351.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	16.59	11.06	1.85	15.52	8.4	4.82	14.79	12.82	16.86
Merged-chr13-107657857-2	chr13	107657369	107658369	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-29528.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	9.72	4.15	2.77	6.07	5.13	4.82	0.0	2.21	0.0
Merged-chr1-91259983-2	chr1	91259491	91260491	+	907.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 3 of 10)	URR1A|DNA|hAT-Charlie	9425.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	14.87	6.91	3.7	9.45	3.73	7.23	8.45	6.19	7.49
Merged-chr1-92648155-6	chr1	92647634	92648634	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153114, intron 1 of 4)	intron (NM_153114, intron 1 of 4)	707.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	16.59	17.05	3.7	21.59	15.86	24.11	12.67	15.03	12.49
Merged-chr6-140751225-3	chr6	140750734	140751734	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	124349.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	58.92	59.44	36.07	60.05	80.71	70.73	91.89	101.26	43.72
Merged-chr16-4743390-3	chr16	4742865	4743865	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010443, intron 1 of 5)	RLTR28|LTR|ERVL	1752.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	45.19	46.08	38.85	134.27	129.22	118.16	89.78	72.52	44.97
Merged-chr10-59865248-3	chr10	59864770	59865770	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14321.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.58	3.23	1.85	2.7	3.27	4.82	2.11	0.88	9.37
Merged-chr17-24159071-3	chr17	24158589	24159589	+	907.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	4644.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	16.59	9.68	13.87	8.1	6.06	16.08	9.51	4.42	11.24
Merged-chr2-30934163-3	chr2	30933655	30934655	+	907.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-18846.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	6.29	1.38	3.7	2.7	3.27	3.22	2.11	3.54	5.0
Merged-chr12-35406259-3	chr12	35405774	35406774	+	907.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	9.15	13.82	7.4	22.27	10.26	22.51	15.84	12.38	14.36
Merged-chr1-194962396-3	chr1	194961903	194962903	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033564, intron 2 of 4)	intron (NR_033564, intron 2 of 4)	14556.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	6.29	2.76	1.85	6.07	3.27	3.22	0.0	1.33	2.5
Merged-chr12-112875765-3	chr12	112875271	112876271	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14855.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	6.29	4.61	5.55	12.14	2.33	3.22	1.06	1.77	1.25
Merged-chr14-14348407-3	chr14	14347911	14348911	+	907.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 3 of 11)	intron (NM_008369, intron 3 of 11)	1916.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	34.32	39.17	27.75	33.74	10.73	43.4	41.19	31.39	34.97
Merged-chr19-21068593-3	chr19	21068125	21069125	+	907.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36085.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	12.59	22.12	9.25	25.64	24.26	65.11	24.29	7.07	5.0
Merged-chr2-52424390-3	chr2	52423913	52424913	+	907.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	CpG	461.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	159.6	115.2	161.87	105.93	110.1	110.12	204.9	126.02	76.82
Merged-chr9-103345757-2	chr9	103345260	103346260	+	907.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176979, exon 25 of 28)	exon (NM_176979, exon 25 of 28)	19219.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	8.58	11.52	18.5	5.4	9.33	16.88	12.67	15.92	18.11
Merged-chr4-45473322-3	chr4	45472836	45473836	+	907.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	57492.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	49.77	24.88	26.82	57.35	55.05	31.35	61.26	39.8	14.99
Merged-chr17-71868046-2	chr17	71867542	71868542	+	907.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007439)	TTS (NM_007439)	86095.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	4.58	5.53	3.7	8.1	4.2	3.22	1.06	1.33	5.0
Merged-chr11-89035716-3	chr11	89035220	89036220	+	907.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25028.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	9.15	8.75	0.0	4.05	4.2	5.63	13.73	7.96	6.87
Merged-chr10-83534162-3	chr10	83533652	83534652	+	907.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153543)	promoter-TSS (NM_153543)	-12.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	6.29	0.46	1.85	2.7	0.93	1.61	4.22	3.1	1.87
Merged-chr13-55474671-3	chr13	55474190	55475190	+	907.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177372, intron 12 of 13)	intron (NM_001177372, intron 12 of 13)	3086.0	NR_105909	102465569.0		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	5.72	1.38	1.85	3.37	1.4	1.61	3.17	1.77	3.75
Merged-chr6-145187605-3	chr6	145187078	145188078	+	907.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177222, intron 9 of 15)	MTEa|LTR|ERVL-MaLR	23392.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	75.51	62.21	12.02	91.76	66.71	17.68	44.36	38.91	19.98
Merged-chr7-128221154-3	chr7	128220666	128221666	+	907.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14800.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	73.22	51.61	43.47	129.55	55.05	74.75	74.99	75.17	38.72
Merged-chr5-24426841-3	chr5	24426364	24427364	+	907.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253892)	promoter-TSS (NM_001253892)	-657.0	NM_001253892	20535.0	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	12.59	13.36	5.55	5.4	11.66	12.86	14.79	7.52	9.99
Merged-chr5-23711866-1	chr5	23711366	23712366	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015554, intron 1 of 4)	B2_Mm2|SINE|B2	801.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	1.72	4.61	7.4	61.4	65.31	32.15	6.34	1.33	5.0
Merged-chr9-24770545-1	chr9	24770045	24771045	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194263, intron 2 of 7)	intron (NM_194263, intron 2 of 7)	3758.0	NM_020496	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	1.72	2.3	0.0	4.05	1.87	1.61	0.0	2.65	1.25
Merged-chr13-45269099-1	chr13	45268599	45269599	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120643.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	14.3	12.9	17.57	12.14	10.73	20.09	8.45	4.42	6.25
Merged-chr7-113514971-3	chr7	113514476	113515476	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	1142.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	33.75	34.1	14.8	29.69	16.33	21.7	34.85	21.67	12.49
Merged-chr1-181237533-1	chr1	181237033	181238033	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25555.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.72	4.61	3.7	4.05	7.46	4.02	4.22	2.21	5.0
Merged-chr9-104661628-1	chr9	104661128	104662128	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	92145.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	12.01	13.36	10.17	14.17	14.0	14.47	2.11	3.1	5.0
Merged-chr6-83455977-2	chr6	83455482	83456482	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 1 of 11)	CpG	410.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	265.43	158.05	287.66	206.46	168.41	243.55	261.93	178.64	189.23
Merged-chr6-6281036-1	chr6	6280536	6281536	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_136906)	TTS (NR_136906)	32377.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	3.43	2.3	1.85	14.84	29.39	33.76	7.39	7.07	1.25
Merged-chr1-24702521-1	chr1	24702021	24703021	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	23603.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	7.44	13.36	7.4	18.89	9.8	24.11	7.39	9.29	6.87
Merged-chr4-95191883-1	chr4	95191383	95192383	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-139661.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	21.17	13.82	23.12	14.17	16.79	34.56	15.84	8.84	13.74
Merged-chr12-4494343-1	chr12	4493843	4494843	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17161.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	5.15	5.53	1.85	2.7	5.13	8.04	10.56	7.07	8.12
Merged-chr6-125354879-3	chr6	125354471	125355471	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	5248.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	17.16	18.89	35.15	29.01	20.06	45.82	32.74	34.49	43.09
Merged-chr6-72347775-2	chr6	72347279	72348279	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026696, intron 2 of 3)	intron (NM_026696, intron 2 of 3)	462.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	355.25	484.74	326.51	287.43	341.95	330.36	396.07	392.64	233.57
Merged-chr11-55452273-1	chr11	55451773	55452773	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 2 of 3)	intron (NM_009720, intron 2 of 3)	8935.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	37.18	30.87	30.52	64.77	44.32	45.82	26.4	26.53	14.36
Merged-chr2-91475922-1	chr2	91475422	91476422	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172668, intron 8 of 37)	intron (NM_172668, intron 8 of 37)	18391.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	29.75	28.11	24.05	35.09	29.39	32.96	25.35	22.99	23.73
Merged-chr9-77737907-1	chr9	77737407	77738407	+	907.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-16628.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	137.86	160.81	130.42	147.09	151.62	172.01	81.33	62.79	53.71
Merged-chr16-22105548-1	chr16	22105048	22106048	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	Charlie1a|DNA|hAT-Charlie	57751.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	6.29	3.69	1.85	8.1	7.46	6.43	7.39	1.33	2.5
Merged-chr14-51090645-3	chr14	51090138	51091138	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-439.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	108.69	125.79	113.77	88.39	89.57	70.73	103.51	115.85	55.58
Merged-chr10-25295168-1	chr10	25294668	25295668	+	907.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	3995.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	7.44	2.3	2.77	3.37	3.27	1.61	71.82	78.26	33.1
Merged-chr2-132235384-1	chr2	132234884	132235884	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12404.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	16.02	9.68	28.67	8.77	8.4	16.08	17.96	9.73	24.36
Merged-chr2-4391338-2	chr2	4390839	4391839	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	ORR1F|LTR|ERVL-MaLR	-9637.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	5.15	6.45	0.0	2.7	7.46	3.22	7.39	8.4	1.87
Merged-chr2-150895097-2	chr2	150894595	150895595	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	9636.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	160.75	163.58	99.89	116.73	110.1	125.39	100.34	118.94	66.2
Merged-chr5-115268467-1	chr5	115267967	115268967	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	4428.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	12.01	16.59	5.55	15.52	8.4	28.94	25.35	14.15	16.24
Merged-chr4-134932990-1	chr4	134932490	134933490	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026780, intron 2 of 6)	URR1A|DNA|hAT-Charlie	2010.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	7.44	6.45	0.0	6.07	3.27	3.22	8.45	2.21	9.99
Merged-chr10-4093006-3	chr10	4092508	4093508	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	119933.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	16.59	14.75	7.4	14.17	19.59	22.51	6.34	6.19	3.75
Merged-chr12-38765539-1	chr12	38765039	38766039	+	907.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14543.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.86	3.23	8.32	2.7	4.2	2.41	4.22	5.31	5.0
Merged-chr9-114787945-3	chr9	114787439	114788439	+	907.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5946.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	17.73	12.9	15.72	9.45	11.2	14.47	97.17	105.24	68.7
Merged-chr10-99332808-3	chr10	99332311	99333311	+	906.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69580.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	11.44	11.98	3.7	6.07	9.33	12.86	3.17	12.82	9.99
Merged-chr6-145747303-3	chr6	145746772	145747772	+	906.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-61111.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	49.2	32.25	19.42	47.23	55.05	82.79	12.67	15.92	6.25
Merged-chr5-33273994-3	chr5	33273538	33274538	+	906.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198860, intron 1 of 9)	intron (NM_001198860, intron 1 of 9)	966.0	NM_001310535	13016.0	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	132.72	123.49	86.02	107.28	104.5	127.0	114.07	125.13	73.07
Merged-chr10-108099053-3	chr10	108098555	108099555	+	906.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63345.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	5.15	3.23	3.7	1.35	3.27	6.43	1.06	2.65	1.25
Merged-chr9-44169312-3	chr9	44168807	44169807	+	906.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	34649.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	46.91	48.84	34.22	51.28	48.52	46.62	44.36	38.91	21.23
Merged-chr4-63560215-3	chr4	63559751	63560751	+	906.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	24.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	89.24	111.05	86.02	120.1	111.03	131.02	200.68	185.27	108.04
Merged-chr11-74522791-3	chr11	74522311	74523311	+	906.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	CpG	67347.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	21.17	22.12	13.87	37.11	31.72	45.82	42.25	24.32	19.98
Merged-chr17-6107410-4	chr17	6106885	6107885	+	906.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103181, intron 1 of 13)	intron (NM_001103181, intron 1 of 13)	555.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	129.28	112.43	98.97	131.57	85.37	86.81	115.12	61.02	49.96
Merged-chr8-83724944-3	chr8	83724430	83725430	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106188)	promoter-TSS (NR_106188)	-946.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	8.01	6.91	32.37	14.84	3.27	13.66	9.51	3.54	11.24
Merged-chr12-98833198-3	chr12	98832728	98833728	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	62206.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	13.73	4.61	5.55	9.45	0.47	12.86	17.96	7.96	8.12
Merged-chr14-27378568-3	chr14	27378049	27379049	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	17160.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	41.19	44.24	30.52	43.86	34.06	54.66	25.35	30.51	25.61
Merged-chr3-87906820-3	chr3	87906322	87907322	+	906.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-28.0	NM_001331051	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	203.08	157.59	141.52	200.39	195.93	167.99	214.41	126.9	119.91
Merged-chr4-43556123-3	chr4	43555631	43556631	+	906.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 3 of 56)	intron (NM_011602, intron 3 of 56)	6452.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	13.73	17.51	10.17	23.62	12.13	28.13	12.67	14.15	16.24
Merged-chr7-67425368-3	chr7	67424869	67425869	+	906.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52511.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	54.92	59.44	49.02	79.62	51.78	89.22	58.09	59.69	38.1
Merged-chrX-75108262-2	chrX	75107736	75108736	+	906.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001030307, exon 14 of 15)	exon (NM_001030307, exon 14 of 15)	12382.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	22.88	27.19	24.05	25.64	16.79	13.66	33.8	26.53	24.98
Merged-chr3-87337277-2	chr3	87336787	87337787	+	906.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20594.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	62.93	74.19	50.87	107.95	66.71	83.59	170.05	204.28	99.3
Merged-chr2-92024534-3	chr2	92024029	92025029	+	906.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-359.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.58	1.84	1.85	8.77	1.87	4.82	1.06	0.88	4.37
Merged-chr14-21812949-3	chr14	21812461	21813461	+	906.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18600.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	48.62	24.42	37.0	37.11	10.26	19.29	53.87	36.26	18.74
Merged-chr5-105798485-3	chr5	105797986	105798986	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	L2c|LINE|L2	-78082.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	6.29	8.29	5.55	14.17	9.33	8.04	10.56	3.1	6.25
Merged-chr6-83454024-3	chr6	83453510	83454510	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	2382.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	33.18	27.19	25.9	31.71	31.72	53.05	42.25	34.05	33.72
Merged-chr17-56763560-3	chr17	56763049	56764049	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1202.0	NM_001360405	224907.0	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	14.3	19.81	18.5	11.47	11.66	19.29	28.52	26.97	26.23
Merged-chr3-115682979-3	chr3	115682481	115683481	+	906.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32074.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	34.32	32.25	3.7	68.82	38.25	48.23	48.58	22.99	20.61
Merged-chr5-30871951-3	chr5	30871434	30872434	+	906.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144525, intron 4 of 16)	intron (NM_144525, intron 4 of 16)	2355.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	10.87	10.14	9.25	15.52	13.06	29.74	5.28	10.17	15.61
Merged-chr2-167060876-3	chr2	167060379	167061379	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-2055.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	128.71	139.16	88.8	159.91	104.96	110.12	182.72	225.06	111.17
Merged-chr1-180945591-1	chr1	180945091	180946091	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3073.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	37.76	46.54	48.1	41.16	34.52	53.05	49.64	38.47	39.97
Merged-chr6-97816002-1	chr6	97815502	97816502	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	8944.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	43.48	52.53	48.1	58.7	40.12	44.21	42.25	50.85	29.98
Merged-chr2-59438140-3	chr2	59437632	59438632	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46521.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	74.94	66.81	51.8	95.14	70.91	48.23	68.65	68.98	34.97
Merged-chr14-20861402-3	chr14	20860898	20861898	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D-int|LTR|ERVL-MaLR	24736.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.29	5.99	1.85	6.07	7.93	2.41	5.28	5.75	8.74
Merged-chr3-27280605-3	chr3	27280117	27281117	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36460.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	23.45	26.26	9.25	42.51	41.99	29.74	47.53	56.6	38.72
Merged-chr6-113643021-3	chr6	113642490	113643490	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	4523.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	29.17	47.0	55.5	38.46	32.66	52.25	45.42	32.72	39.97
Merged-chr2-68350868-3	chr2	68350362	68351362	+	906.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	121119.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.29	1.38	3.7	3.37	1.87	0.8	3.17	1.33	0.0
Merged-chr7-67260035-1	chr7	67259535	67260535	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 7 of 11)	intron (NM_001357324, intron 7 of 11)	37419.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	12.59	11.98	11.1	12.14	7.46	18.49	5.28	7.96	9.99
Merged-chr1-155817766-1	chr1	155817266	155818266	+	906.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4867.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	6.86	4.61	0.0	14.17	9.33	1.61	2.11	0.88	5.62
Merged-chr7-19307130-4	chr7	19306631	19307631	+	906.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008036, exon 2 of 4)	exon (NM_008036, exon 2 of 4)	2914.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	23.45	10.6	7.4	13.49	1.4	0.0	10.56	3.98	5.0
Merged-chr5-64212527-4	chr5	64212040	64213040	+	906.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-17817.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	79.52	103.68	70.3	129.55	135.29	126.19	103.51	130.88	54.96
Merged-chr1-126817844-2	chr1	126817355	126818355	+	906.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	12777.0	NM_176957	210356.0	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	4.0	3.23	2.77	4.05	3.73	0.0	7.39	5.75	16.24
Merged-chr14-66871676-3	chr14	66871123	66872123	+	906.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034881)	TTS (NM_001034881)	2773.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	79.52	75.11	68.45	49.25	48.52	72.34	83.44	95.51	47.46
Merged-chr16-35901965-3	chr16	35901460	35902460	+	906.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-30578.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	137.29	132.25	84.17	120.77	112.43	81.99	175.33	212.24	93.68
Merged-chr13-85506896-3	chr13	85506410	85507410	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-217424.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	40.62	30.87	37.0	25.64	33.12	27.33	36.97	33.16	31.85
Merged-chr4-115848221-3	chr4	115847703	115848703	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285487, intron 2 of 14)	intron (NM_001285487, intron 2 of 14)	9005.0	NM_001355174	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	187.63	202.28	138.74	207.81	195.0	162.37	139.42	199.86	93.05
Merged-chr4-135282928-3	chr4	135282428	135283428	+	906.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10168.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	16.02	16.59	13.87	11.47	5.13	8.04	4.22	6.19	6.25
Merged-chr12-111699478-2	chr12	111698985	111699985	+	906.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13468.0	NM_001324481	70369.0	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	4.0	3.23	0.0	16.87	7.46	17.68	23.24	19.01	10.62
Merged-chr6-124782693-3	chr6	124782193	124783193	+	906.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	-2966.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	11.44	5.53	9.25	7.42	3.27	3.22	5.28	2.21	4.37
Merged-chr15-96655689-3	chr15	96655177	96656177	+	906.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12764.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	81.8	77.87	46.25	73.54	59.25	51.44	62.31	53.06	17.49
Merged-chr11-95834949-2	chr11	95834432	95835432	+	906.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025659, intron 3 of 7)	intron (NM_025659, intron 3 of 7)	-7363.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	97.82	79.25	105.44	112.0	84.9	137.45	137.3	133.98	71.2
Merged-chr9-3258860-3	chr9	3258361	3259361	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-59048.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	2.86	2.3	0.92	4.72	1.87	0.0	1.06	0.44	0.0
Merged-chr12-25223758-3	chr12	25223249	25224249	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94575.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	9.15	8.29	4.62	14.84	6.53	3.22	10.56	9.73	3.12
Merged-chr8-33968485-3	chr8	33968000	33969000	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-38637.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	7.44	6.91	5.55	12.82	6.53	3.22	6.34	7.96	5.0
Merged-chr4-141832430-3	chr4	141831939	141832939	+	906.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-6434.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	34.32	30.87	40.7	2.02	1.87	1.61	41.19	33.16	29.98
Merged-chr6-146759197-2	chr6	146758698	146759698	+	906.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172734, intron 2 of 13)	intron (NM_172734, intron 2 of 13)	34268.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	13.73	2.76	3.7	1.35	0.47	8.04	5.28	7.52	5.0
Merged-chr1-165461956-3	chr1	165461463	165462463	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027430, intron 1 of 4)	intron (NM_027430, intron 1 of 4)	755.0	NM_027430	70456.0	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	62.35	63.13	49.95	56.0	46.18	49.83	55.98	62.35	33.1
Merged-chr2-59203144-3	chr2	59202662	59203662	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	42312.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	31.46	19.35	18.5	31.04	11.66	13.66	25.35	17.24	8.74
Merged-chr19-47531366-2	chr19	47530868	47531868	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 2 of 9)	intron (NM_175360, intron 2 of 9)	5751.0	NM_175360	108689.0	Mm.218048	NM_175360	ENSMUSG00000042694	Stn1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|Obfc1|RPA-32	STN1, CST complex subunit	protein-coding	24.03	14.28	20.35	18.22	13.06	34.56	17.96	8.84	19.98
Merged-chr5-9101590-1	chr5	9101090	9102090	+	906.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	853.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	46.34	48.84	42.55	47.9	34.06	49.03	68.65	45.99	38.1
Merged-chr14-19750579-1	chr14	19750079	19751079	+	906.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008695)	promoter-TSS (NM_008695)	-678.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	28.03	32.25	14.8	58.7	52.25	69.93	21.12	23.88	11.24
Merged-chr12-100204043-2	chr12	100203547	100204547	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313934, intron 3 of 5)	intron (NM_001313934, intron 3 of 5)	3903.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	58.92	52.07	24.97	56.68	46.65	21.7	41.19	32.72	25.61
Merged-chr10-62507045-2	chr10	62506555	62507555	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B1_Mus1|SINE|Alu	702.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	373.55	388.44	160.94	387.29	399.33	277.31	291.51	427.58	186.73
Merged-chr15-100411307-2	chr15	100410809	100411809	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356952, intron 2 of 15)	intron (NM_001356952, intron 2 of 15)	11746.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	26.89	33.64	22.2	1.35	0.0	0.0	24.29	26.97	13.12
Merged-chr6-86396723-2	chr6	86396193	86397193	+	906.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025823, intron 1 of 5)	intron (NM_025823, intron 1 of 5)	457.0	NM_001355687	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	291.18	245.14	222.91	288.78	244.45	266.86	253.48	279.45	150.51
Merged-chr11-117317149-3	chr11	117316645	117317645	+	906.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-14570.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	50.91	43.31	33.3	51.28	32.66	43.4	22.18	17.24	16.86
Merged-chr14-65262447-3	chr14	65261947	65262947	+	906.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021458)	promoter-TSS (NM_021458)	16.0	NM_021458	14365.0	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	6.29	1.38	5.55	5.4	0.93	0.8	3.17	0.0	1.25
Merged-chr15-25556431-3	chr15	25555917	25556917	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66133.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	20.02	5.07	8.32	11.47	2.33	3.22	6.34	8.4	18.74
Merged-chr18-63709266-3	chr18	63708741	63709741	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014981, intron 1 of 27)	intron (NM_001014981, intron 1 of 27)	546.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	99.54	91.7	65.67	141.02	125.02	94.85	146.81	140.61	54.33
Merged-chr3-84647802-3	chr3	84647282	84648282	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18410.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	8.01	14.28	2.77	18.89	23.33	23.31	44.36	44.66	23.11
Merged-chr3-148978266-3	chr3	148977777	148978777	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23642.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	10.3	8.29	1.85	14.84	8.4	1.61	4.22	4.42	5.0
Merged-chr13-85284018-3	chr13	85283521	85284521	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	(TG)n|Simple_repeat|Simple_repeat	5465.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.58	9.22	2.77	8.77	7.46	4.82	5.28	5.31	4.37
Merged-chr5-147871672-3	chr5	147871162	147872162	+	906.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 4 of 5)	intron (NM_025624, intron 4 of 5)	11034.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	24.03	15.21	16.65	24.96	10.73	8.04	17.96	9.29	19.98
Merged-chr7-127118859-3	chr7	127118339	127119339	+	906.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	RSINE1|SINE|B4	3190.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	111.55	82.02	95.27	150.46	171.68	148.7	264.05	242.75	85.56
Merged-chr8-116587788-3	chr8	116587298	116588298	+	906.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 4 of 6)	intron (NM_029441, intron 4 of 6)	82783.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	15.45	9.68	20.35	21.59	9.8	16.88	14.79	22.11	12.49
Merged-chr2-90575259-3	chr2	90574745	90575745	+	906.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIRc|SINE|MIR	5402.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	301.47	357.11	305.23	341.41	276.64	255.6	293.62	369.21	213.59
Merged-chr3-152763574-2	chr3	152763092	152764092	+	906.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 9 of 10)	Lx8|LINE|L1	49492.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	15.45	11.52	20.35	17.54	15.39	14.47	20.07	13.27	13.74
Merged-chr4-108318842-3	chr4	108318345	108319345	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9307.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	25.17	18.43	22.2	33.74	26.12	32.96	34.85	24.32	19.36
Merged-chr13-30749916-3	chr13	30749420	30750420	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347508, intron 1 of 8)	intron (NM_001347508, intron 1 of 8)	687.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	90.38	87.09	24.97	99.18	76.97	57.87	85.55	81.8	36.85
Merged-chr10-53509301-3	chr10	53508804	53509804	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037973, intron 3 of 3)	intron (NR_037973, intron 3 of 3)	9685.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	14.87	4.61	9.25	6.75	9.33	4.82	11.62	6.63	1.25
Merged-chr16-57559572-1	chr16	57559072	57560072	+	906.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	MIRb|SINE|MIR	10330.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	56.63	85.25	42.55	78.27	45.72	32.96	47.53	50.85	22.48
Merged-chr12-79168112-1	chr12	79167612	79168612	+	906.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016800, intron 1 of 5)	intron (NM_016800, intron 1 of 5)	4346.0	NM_016800	53612.0	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	2.86	4.15	1.85	130.9	95.17	101.28	3.17	0.88	9.37
Merged-chr2-155443491-3	chr2	155443010	155444010	+	906.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	77.23	95.38	54.57	48.58	72.78	49.03	119.35	151.66	50.59
Merged-chr18-56709866-3	chr18	56709301	56710301	+	906.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	B3|SINE|B2	1988.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	48.62	54.37	56.42	33.06	33.59	36.97	60.2	67.21	38.72
Merged-chr19-55655001-3	chr19	55654495	55655495	+	906.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	47209.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	121.85	96.76	79.55	151.81	112.43	75.56	91.89	99.49	47.46
Merged-chr5-110980144-2	chr5	110979632	110980632	+	906.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-24012.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	14.3	15.67	7.4	35.09	7.46	25.72	14.79	3.98	6.25
Merged-chr11-105502510-3	chr11	105502010	105503010	+	906.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45775.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	27.46	17.97	17.57	15.52	17.26	17.68	14.79	9.29	16.24
Merged-chr17-67340503-3	chr17	67340009	67341009	+	906.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	ID_B1|SINE|B4	13950.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	72.65	76.95	50.87	79.62	74.17	49.83	104.56	102.58	47.46
Merged-chr11-117706441-3	chr11	117705933	117706933	+	906.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	52144.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	50.91	43.31	55.5	62.07	40.12	36.17	36.97	56.6	35.6
Merged-chr9-108710912-2	chr9	108710410	108711410	+	906.2666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	18767.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	11.44	5.99	13.87	7.42	9.33	11.25	13.73	12.38	9.37
Merged-chr5-141084493-3	chr5	141084006	141085006	+	906.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-83910.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	201.36	223.94	86.95	172.05	172.14	151.11	181.66	242.75	123.66
Merged-chr9-44176063-2	chr9	44175501	44176501	+	906.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	41343.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	37.76	35.02	43.47	42.51	27.06	27.33	27.46	22.99	33.72
Merged-chr8-31031858-2	chr8	31031346	31032346	+	906.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57681.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.57	2.3	0.0	5.4	1.4	1.61	6.34	11.05	5.62
Merged-chr1-56192421-1	chr1	56191921	56192921	+	906.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92D|LTR|ERV1	173443.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	4.58	1.38	1.85	2.02	4.2	3.22	3.17	4.86	3.75
Merged-chr1-97662510-3	chr1	97662023	97663023	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133825)	promoter-TSS (NM_133825)	-505.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	118.99	142.84	109.14	98.51	121.76	142.27	102.45	128.67	90.56
Merged-chr1-138253647-3	chr1	138253137	138254137	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20101.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	25.17	19.35	24.97	14.17	14.46	19.29	21.12	12.82	24.98
Merged-chr16-30010431-3	chr16	30009922	30010922	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1755.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	24.6	40.09	27.75	29.69	29.39	32.15	53.87	38.91	34.35
Merged-chr15-78860733-3	chr15	78860253	78861253	+	906.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5224.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	32.04	44.24	24.05	43.18	33.12	57.07	19.01	36.26	24.36
Merged-chr13-3665537-3	chr13	3665058	3666058	+	906.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31526.0	NM_001267724	142688.0	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	2.86	3.23	1.85	4.72	0.93	9.65	2.11	1.77	0.0
Merged-chr15-57926145-3	chr15	57925620	57926620	+	906.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	RSINE1|SINE|B4	13921.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	140.73	174.18	87.87	150.46	107.3	81.18	155.26	234.35	88.68
Merged-chr1-55055508-3	chr1	55055005	55056005	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026424, intron 1 of 3)	intron (NM_026424, intron 1 of 3)	2735.0	NM_001039710	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	26.31	19.81	15.72	5.4	3.27	8.04	17.96	18.13	11.87
Merged-chr5-29737073-2	chr5	29736563	29737563	+	906.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359198, intron 1 of 8)	intron (NM_001359198, intron 1 of 8)	-1127.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	151.59	186.16	86.95	149.79	145.08	118.96	138.36	167.14	86.81
Merged-chr1-156559349-3	chr1	156558873	156559873	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	CpG	586.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	215.66	217.03	178.52	238.85	257.05	217.83	337.98	357.71	211.71
Merged-chr1-191163686-2	chr1	191163191	191164191	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001109759, exon 1 of 1)	exon (NM_001109759, exon 1 of 1)	1126.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	16.59	4.15	3.7	9.45	3.73	0.0	7.39	6.19	5.0
Merged-chr8-103970200-1	chr8	103969700	103970700	+	906.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131425.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	5.72	4.15	5.55	22.27	14.93	8.84	17.96	28.3	9.37
Merged-chr10-117313339-3	chr10	117312823	117313823	+	906.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20455.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	8.01	5.53	3.7	2.02	6.53	0.0	6.34	5.31	5.0
Merged-chr2-27690938-2	chr2	27690418	27691418	+	906.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	13717.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	82.95	106.44	98.05	99.86	103.1	106.1	74.99	78.71	79.32
Merged-chr4-102518049-2	chr4	102517536	102518536	+	906.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-52024.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	126.42	117.04	86.95	0.0	0.0	0.0	69.71	69.42	76.19
Merged-chr3-105019896-3	chr3	105019387	105020387	+	906.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	33066.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	88.1	90.31	74.92	116.73	92.84	98.87	100.34	82.69	69.32
Merged-chr11-62224141-3	chr11	62223659	62224659	+	906.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-24825.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	9.15	7.37	5.55	10.12	6.06	10.45	6.34	7.52	7.49
Merged-chr6-56384428-2	chr6	56383920	56384920	+	906.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14786.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	7.44	8.75	4.62	10.8	11.2	0.0	5.28	2.65	8.12
Merged-chrX-38181997-3	chrX	38181515	38182515	+	906.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7778.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	5.72	3.23	0.92	6.75	1.4	3.22	4.22	0.0	1.25
Merged-chr19-55315895-3	chr19	55315410	55316410	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001293685)	promoter-TSS (NM_001293685)	126.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	132.14	176.94	124.87	166.66	206.2	161.56	200.68	199.86	102.42
Merged-chr19-11602177-3	chr19	11601680	11602680	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 2 of 6)	intron (NM_026835, intron 2 of 6)	2624.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	24.03	11.98	18.5	5.4	11.2	14.47	32.74	28.74	24.98
Merged-chr11-20914127-3	chr11	20913607	20914607	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82999.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	13.16	10.14	11.1	10.8	8.86	14.47	5.28	6.19	9.99
Merged-chr9-102913776-3	chr9	102913282	102914282	+	906.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	78862.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	4.58	1.38	7.4	5.4	3.73	6.43	7.39	1.33	5.0
Merged-chr11-98917662-3	chr11	98917189	98918189	+	906.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025779, intron 9 of 11)	intron (NM_001025779, intron 9 of 11)	9538.0	NM_011799	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	113.84	116.58	105.44	102.56	87.24	113.33	123.57	142.82	68.07
Merged-chr7-55869422-2	chr7	55868914	55869914	+	906.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	ORR1B2|LTR|ERVL-MaLR	27343.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	18.31	16.59	13.87	43.18	13.53	41.8	52.81	80.03	61.83
Merged-chr16-57549820-3	chr16	57549320	57550320	+	906.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	578.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	331.22	369.55	217.36	377.84	348.02	241.94	313.69	345.77	166.75
Merged-chr5-114100243-3	chr5	114099761	114100761	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-72.0	NM_001033202	100756.0	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	20.02	12.44	12.95	15.52	11.66	11.25	22.18	2.65	8.74
Merged-chr6-31121794-3	chr6	31121296	31122296	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-58703.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	33.18	38.71	51.8	53.98	46.18	61.89	118.29	133.98	78.69
Merged-chr13-91697130-3	chr13	91696635	91697635	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 15 of 15)	intron (NM_001360776, intron 15 of 15)	-44386.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	19.45	20.27	37.0	24.29	10.26	14.47	15.84	9.29	13.74
Merged-chr16-32798967-3	chr16	32798485	32799485	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1550.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	9.72	4.15	3.7	7.42	2.8	4.82	11.62	3.54	1.25
Merged-chr15-39945177-3	chr15	39944681	39945681	+	906.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_172814	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	108.12	120.26	82.32	160.58	138.55	123.78	89.78	170.23	61.2
Merged-chr3-108904091-3	chr3	108903556	108904556	+	906.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356292, exon 7 of 7)	exon (NM_001356292, exon 7 of 7)	7673.0	NM_025845	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	65.79	74.19	48.1	46.56	39.65	59.48	67.6	61.9	59.95
Merged-chr1-156467837-3	chr1	156467334	156468334	+	906.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	6494.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	81.23	85.71	48.1	103.91	106.36	96.45	143.64	155.64	59.33
Merged-chr17-71251339-3	chr17	71250813	71251813	+	906.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357336)	TTS (NM_001357336)	46659.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	56.63	63.13	36.07	122.8	94.23	94.85	31.69	27.86	12.49
Merged-chr11-11719372-1	chr11	11718872	11719872	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	29195.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	10.3	6.91	3.7	12.82	10.73	15.27	7.39	8.4	5.0
Merged-chr15-40020726-1	chr15	40020226	40021226	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24462.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	0.57	3.23	0.0	4.72	3.73	3.22	3.17	5.75	1.25
Merged-chr16-57915379-1	chr16	57914879	57915879	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-160642.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	5.15	3.23	1.85	8.1	2.8	4.02	5.28	4.42	2.5
Merged-chr1-183633896-1	chr1	183633396	183634396	+	906.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-115081.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.58	7.83	19.42	3.37	3.27	11.25	125.69	122.92	74.32
Merged-chr17-64720793-1	chr17	64720293	64721293	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	intron (NM_008549, intron 16 of 21)	-46318.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	90.96	127.18	109.14	156.53	139.49	189.69	80.27	106.12	97.43
Merged-chr10-82973709-1	chr10	82973209	82974209	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11788.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	4.0	6.45	7.4	8.77	5.13	4.82	3.17	2.65	2.5
Merged-chr14-25377606-1	chr14	25377106	25378106	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81579.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	57.78	43.31	36.07	47.9	47.58	58.68	39.08	25.2	23.11
Merged-chr4-139296846-1	chr4	139296346	139297346	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151463, intron 9 of 10)	intron (NR_151463, intron 9 of 10)	13862.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.86	1.38	12.02	6.07	0.93	5.63	8.45	1.77	2.5
Merged-chr6-25726569-1	chr6	25726069	25727069	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36589.0	NM_010338	14763.0	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	8.01	4.61	1.85	6.07	11.2	4.02	5.28	3.54	5.0
Merged-chr2-165884746-3	chr2	165884256	165885256	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	82.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	171.62	169.57	127.64	159.91	139.95	186.48	228.14	268.84	152.38
Merged-chr3-14848946-1	chr3	14848446	14849446	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14592.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	1.14	6.45	0.0	2.02	5.6	1.61	6.34	3.54	5.0
Merged-chr16-58017539-2	chr16	58017038	58018038	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-262801.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	9.72	6.91	1.85	4.72	10.26	1.61	5.28	3.54	2.5
Merged-chr5-17820655-1	chr5	17820155	17821155	+	906.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159557, intron 4 of 15)	intron (NM_001159557, intron 4 of 15)	15241.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	22.31	25.8	16.65	19.57	16.33	16.88	19.01	17.24	8.74
Merged-chr5-113099704-1	chr5	113099204	113100204	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172884, intron 2 of 7)	intron (NM_172884, intron 2 of 7)	-18120.0	NM_001359009	12962.0	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	1.72	1.38	1.85	2.7	0.47	2.41	3.17	1.33	1.25
Merged-chr3-152928774-1	chr3	152928274	152929274	+	906.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	53433.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.0	0.46	1.85	2.7	4.67	1.61	14.79	22.55	14.99
Merged-chr11-29546348-3	chr11	29545845	29546845	+	906.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133767)	TTS (NM_133767)	-1605.0	NM_028504	73324.0	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	18.88	18.89	9.25	10.8	12.6	22.51	10.56	18.13	8.74
Merged-chr4-62674045-4	chr4	62673461	62674461	+	905.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310706)	promoter-TSS (NM_001310706)	-13.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.86	9.22	10.17	9.45	5.13	8.84	10.56	4.86	5.62
Merged-chr10-128036184-2	chr10	128035694	128036694	+	905.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013608, intron 1 of 7)	CpG	848.0	NM_001113199	17938.0	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	354.1	330.38	200.71	372.44	437.12	202.55	363.33	389.11	172.37
Merged-chr4-109271975-3	chr4	109271477	109272477	+	905.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8298.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	11.44	12.9	12.95	8.77	8.86	15.27	6.34	9.29	4.37
Merged-chr6-114874383-5	chr6	114873875	114874875	+	905.934265	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	47446.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	160.18	149.75	110.99	146.41	146.02	128.61	149.98	141.05	84.31
Merged-chr11-29151759-3	chr11	29151265	29152265	+	905.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	ORR1D2|LTR|ERVL-MaLR	21014.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	12.59	11.98	14.8	30.36	21.46	16.08	43.3	22.55	21.23
Merged-chr5-150840798-3	chr5	150840303	150841303	+	905.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111804.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	30.89	49.3	20.35	39.13	41.52	50.64	59.15	66.77	48.09
Merged-chr7-119879384-2	chr7	119878875	119879875	+	905.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	16083.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	8.58	3.69	5.55	8.1	5.6	6.43	11.62	12.38	5.0
Merged-chr7-90352417-3	chr7	90351918	90352918	+	905.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040085, intron 2 of 18)	intron (NM_001040085, intron 2 of 18)	-34563.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	2.86	3.69	5.55	6.75	1.87	0.8	5.28	3.98	1.25
Merged-chr12-110417463-2	chr12	110416968	110417968	+	905.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-29711.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	2.29	3.69	3.7	10.8	5.13	13.66	12.67	7.96	3.75
Merged-chr10-80034187-3	chr10	80033669	80034669	+	905.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5490.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	53.2	46.08	61.97	87.04	72.31	89.22	67.6	61.02	34.35
Merged-chr5-102030067-3	chr5	102029570	102030570	+	905.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	39851.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	142.44	152.52	106.37	197.02	153.95	191.3	230.25	250.27	126.78
Merged-chr11-114903298-2	chr11	114902825	114903825	+	905.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13284.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	50.91	44.24	52.72	58.03	41.99	65.91	51.75	30.95	41.84
Merged-chr3-84504499-3	chr3	84503991	84504991	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293801, intron 7 of 7)	intron (NM_001293801, intron 7 of 7)	-24052.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	9.15	7.83	3.7	19.57	9.33	12.86	4.22	6.19	1.25
Merged-chr1-136675929-3	chr1	136675430	136676430	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7466.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	165.9	143.76	89.72	224.68	193.13	145.49	227.08	262.21	118.04
Merged-chr4-133108062-3	chr4	133107572	133108572	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22561.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	52.06	38.71	48.1	53.3	40.12	64.3	8.45	12.38	13.74
Merged-chr7-55850981-3	chr7	55850479	55851479	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	8908.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	33.75	34.56	41.62	29.01	11.66	19.29	41.19	31.84	38.1
Merged-chr15-41163807-3	chr15	41163290	41164290	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9911.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	4.0	5.53	0.0	6.75	1.87	8.04	3.17	3.54	1.25
Merged-chr17-79355084-2	chr17	79354573	79355573	+	905.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	18.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	1.72	3.23	4.62	8.77	3.73	0.0	11.62	6.19	2.5
Merged-chr17-47864697-3	chr17	47864185	47865185	+	905.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29994.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	11.44	2.3	7.4	2.02	4.67	4.02	4.22	2.21	1.25
Merged-chr11-32534454-6	chr11	32533982	32534982	+	905.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	1216.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	84.09	65.43	64.75	77.59	74.17	106.1	109.84	99.49	58.08
Merged-chr4-83433061-3	chr4	83432564	83433564	+	905.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029949, intron 3 of 8)	intron (NM_029949, intron 3 of 8)	15340.0	NM_029949	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	23.45	23.5	33.3	12.82	10.73	24.11	9.51	17.69	14.36
Merged-chr18-67369804-3	chr18	67369307	67370307	+	905.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20924.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	1.72	3.69	0.0	5.4	0.93	2.41	2.11	1.77	6.87
Merged-chr9-48414354-1	chr9	48413854	48414854	+	905.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-39990.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	1.72	0.92	3.7	2.7	1.4	3.22	32.74	23.88	29.98
Merged-chr5-122662740-3	chr5	122662239	122663239	+	905.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038845, intron 5 of 12)	Lx8|LINE|L1	12315.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	22.88	6.45	12.95	15.52	6.06	19.29	27.46	32.28	14.36
Merged-chr2-168583244-3	chr2	168582805	168583805	+	905.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	7060.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	19.45	17.51	15.72	16.87	9.8	11.25	7.39	3.1	5.0
Merged-chr18-6240885-3	chr18	6240400	6241400	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008448, intron 1 of 25)	CpG	624.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	148.73	193.53	136.89	159.91	168.88	143.88	151.03	131.77	114.29
Merged-chr7-113770527-3	chr7	113770039	113771039	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	4541.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	6.86	7.37	5.55	5.4	2.8	1.61	8.45	9.73	3.75
Merged-chr12-55019567-3	chr12	55019055	55020055	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33219.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	28.6	33.64	36.07	19.57	28.46	36.97	46.47	40.24	56.83
Merged-chr11-77467990-3	chr11	77467495	77468495	+	905.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139130, intron 5 of 9)	CpG	4082.0	NM_139130	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	6.86	2.3	0.92	8.1	4.2	1.61	6.34	4.86	3.12
Merged-chr17-52725351-2	chr17	52724852	52725852	+	905.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	122643.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	3.43	3.69	4.62	1.35	6.06	9.65	10.56	3.1	4.37
Merged-chr11-44441405-1	chr11	44440905	44441905	+	905.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29143.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	1.72	3.69	2.77	3.37	3.27	5.63	27.46	33.6	22.48
Merged-chr6-143146963-3	chr6	143146442	143147442	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	6989.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	21.74	17.51	9.25	25.64	21.46	16.88	40.14	30.51	14.36
Merged-chr15-67733201-3	chr15	67732722	67733722	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	506453.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	13.73	11.06	21.27	2.7	3.27	3.22	15.84	14.59	24.98
Merged-chr13-99315013-3	chr13	99314506	99315506	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29672.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	8.58	5.53	0.0	13.49	5.6	1.61	13.73	9.29	3.75
Merged-chr17-26638040-1	chr17	26637540	26638540	+	905.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 7 of 9)	intron (NM_026170, intron 7 of 9)	-38356.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	16.59	10.14	17.57	26.99	16.79	33.76	5.28	7.96	6.25
Merged-chr18-37655743-3	chr18	37655229	37656229	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301259, intron 1 of 3)	intron (NM_001301259, intron 1 of 3)	-6216.0	NM_033584	93709.0	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	24.6	25.34	31.45	12.82	25.66	30.54	21.12	23.43	10.62
Merged-chr14-25736766-3	chr14	25736272	25737272	+	905.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	32084.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	26.31	27.19	18.5	31.04	16.33	60.28	30.63	16.8	27.48
Merged-chr1-138543692-1	chr1	138543192	138544192	+	905.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 3 of 9)	RLTR11B|LTR|ERVK	76065.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	22.31	24.42	22.2	20.92	10.73	28.94	25.35	13.71	17.49
Merged-chr2-80079770-2	chr2	80079259	80080259	+	905.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	-40857.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	52.63	52.07	18.5	78.94	43.85	34.56	59.15	57.48	29.98
Merged-chr13-101719577-4	chr13	101719081	101720081	+	905.65625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-26951.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	26.31	34.56	37.0	30.36	20.99	29.74	34.85	37.14	21.86
Merged-chr11-70166536-3	chr11	70166045	70167045	+	905.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010796)	promoter-TSS (NM_010796)	-78.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	24.6	10.14	9.25	36.43	22.39	24.92	14.79	22.55	9.37
Merged-chr12-85477457-3	chr12	85476950	85477950	+	905.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010234)	TTS (NM_010234)	3560.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	18.31	19.81	3.7	16.19	11.66	7.23	10.56	4.42	5.0
Merged-chr4-9705936-3	chr4	9705426	9706426	+	905.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-36582.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	13.16	4.15	1.85	8.1	1.87	3.22	5.28	5.31	1.25
Merged-chr18-52463719-3	chr18	52463212	52464212	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-1981.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	4.0	2.76	5.55	2.02	2.8	0.0	12.67	7.07	8.74
Merged-chr11-23855537-3	chr11	23855044	23856044	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39726.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	10.3	4.61	3.7	4.05	1.87	0.8	3.17	3.98	3.12
Merged-chr10-14148138-3	chr10	14147616	14148616	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 9 of 9)	RLTR17|LTR|ERVK	181737.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	11.44	8.29	9.25	8.1	8.86	7.23	9.51	7.96	12.49
Merged-chr16-94290290-3	chr16	94289785	94290785	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360045)	promoter-TSS (NM_001360045)	6.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	9.15	5.99	7.4	5.4	4.2	13.66	6.34	0.44	3.75
Merged-chr12-85467155-3	chr12	85466664	85467664	+	905.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6726.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	17.73	7.37	5.55	31.04	11.66	16.08	17.96	7.96	3.75
Merged-chr2-131479102-2	chr2	131478596	131479596	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-12766.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	14.3	9.22	5.55	24.29	11.2	9.65	31.69	19.9	6.25
Merged-chr16-70330854-2	chr16	70330341	70331341	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	16892.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.15	3.69	7.4	6.07	6.53	6.43	32.74	37.58	15.61
Merged-chr10-27378262-2	chr10	27377763	27378763	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 4 of 63)	intron (NM_008481, intron 4 of 63)	-11603.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	17.16	20.27	10.17	24.29	18.19	24.92	8.45	3.1	6.25
Merged-chr10-91234931-1	chr10	91234431	91235431	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14312.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	4.58	4.15	2.77	4.05	3.73	1.61	7.39	3.98	2.5
Merged-chr18-62045680-2	chr18	62045212	62046212	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	92637.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	105.26	109.21	67.52	112.68	77.44	74.75	119.35	158.3	113.04
Merged-chr16-94544813-4	chr16	94544330	94545330	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18201.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	42.9	27.65	28.67	85.69	52.72	28.94	119.35	80.03	55.58
Merged-chr6-135299225-1	chr6	135298725	135299725	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11159.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	14.87	10.14	1.85	28.34	31.26	41.8	9.51	4.86	4.37
Merged-chr12-34663915-1	chr12	34663415	34664415	+	905.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-135026.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	13.16	11.98	21.27	14.17	12.13	8.04	25.35	15.92	28.73
Merged-chr13-95951236-3	chr13	95950742	95951742	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59320.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	29.17	14.75	3.7	10.8	12.6	14.47	13.73	17.69	16.24
Merged-chr11-69088640-4	chr11	69088201	69089201	+	905.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009497, intron 1 of 4)	CpG	173.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	497.69	367.24	248.81	452.74	364.81	288.56	329.53	379.82	144.27
Merged-chr6-54955298-2	chr6	54954824	54955824	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16337.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	31.46	34.1	27.75	39.13	24.72	20.9	218.63	272.37	159.25
Merged-chr9-47625655-1	chr9	47625155	47626155	+	905.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	95303.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	91.53	109.67	71.22	86.36	78.37	65.91	88.72	90.64	88.68
Merged-chr10-42018407-3	chr10	42017904	42018904	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001034858)	promoter-TSS (NM_001034858)	-22.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	8.01	2.3	0.0	4.05	3.27	2.41	2.11	0.88	1.25
Merged-chr10-100031698-3	chr10	100031210	100032210	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15889.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	98.97	94.92	71.22	114.7	110.1	53.05	103.51	90.64	35.6
Merged-chr17-69396352-3	chr17	69395835	69396835	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12531.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	24.6	32.25	32.37	24.96	25.66	34.56	24.29	26.09	28.1
Merged-chr8-81806979-3	chr8	81806481	81807481	+	905.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	464419.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	11.44	1.84	0.0	4.72	1.4	1.61	4.22	1.33	1.25
Merged-chr7-98339252-3	chr7	98338747	98339747	+	905.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18039.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	103.54	76.49	70.3	77.59	44.32	63.5	41.19	71.63	45.59
Merged-chr15-99835266-3	chr15	99834764	99835764	+	905.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 2 of 10)	intron (NM_001113545, intron 2 of 10)	-15115.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	101.25	68.66	41.62	67.47	52.25	45.82	38.02	20.78	19.36
Merged-chr10-8816923-3	chr10	8816426	8817426	+	905.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	69144.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	37.76	11.52	16.65	49.93	20.53	21.7	31.69	21.67	16.24
Merged-chr16-24434224-2	chr16	24433729	24434729	+	905.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-13862.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	54.92	54.83	13.87	68.82	48.52	43.4	32.74	30.95	21.23
Merged-chr12-84130161-3	chr12	84129657	84130657	+	905.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028821, intron 4 of 7)	ORR1G|LTR|ERVL-MaLR	15829.0	NM_001346528	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	5.72	0.46	3.7	4.72	4.67	3.22	5.28	8.4	2.5
Merged-chr12-40277780-3	chr12	40277255	40278255	+	905.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	54391.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	22.31	27.65	7.4	16.87	16.79	18.49	23.24	13.71	11.24
Merged-chr11-52097198-3	chr11	52096701	52097701	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	28.03	25.8	30.52	29.01	24.26	28.13	17.96	20.34	18.11
Merged-chr9-44326859-3	chr9	44326359	44327359	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007875)	promoter-TSS (NM_007875)	14.0	NM_007875	13478.0	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	88.67	97.69	58.27	111.33	72.31	106.9	83.44	76.49	68.07
Merged-chr7-81529093-3	chr7	81528592	81529592	+	905.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035501)	promoter-TSS (NR_035501)	-824.0	NR_035501	100316717.0		NR_035501	ENSMUSG00000104618	Mir1839	mir-1839|mmu-mir-1839	microRNA 1839	ncRNA	21.74	16.13	12.95	29.01	20.06	18.49	22.18	15.92	18.74
Merged-chr18-5805756-2	chr18	5805252	5806252	+	905.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE2|SINE|Deu	213105.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	48.62	66.35	43.47	88.39	41.52	95.65	53.87	44.66	48.71
Merged-chr11-50025599-2	chr11	50025097	50026097	+	905.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290749, exon 1 of 8)	exon (NM_001290749, exon 1 of 8)	266.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	290.03	234.08	219.21	294.85	218.79	274.09	335.87	200.74	148.01
Merged-chr11-69266487-3	chr11	69265995	69266995	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29473.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	55.49	56.22	30.52	37.78	31.72	49.03	47.53	45.54	29.35
Merged-chr11-64435216-3	chr11	64434716	64435716	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178870)	promoter-TSS (NM_178870)	-116.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	11.44	11.98	12.95	2.7	2.33	1.61	11.62	7.07	8.74
Merged-chr12-102385050-2	chr12	102384562	102385562	+	905.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 8 of 9)	intron (NM_177620, intron 8 of 9)	54751.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	12.59	9.22	20.35	4.72	7.46	26.53	10.56	11.5	10.62
Merged-chr2-27764216-3	chr2	27763709	27764709	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011305)	TTS (NM_011305)	53626.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	118.99	116.12	126.72	114.03	81.17	91.63	81.33	75.61	72.45
Merged-chr5-103914550-1	chr5	103914050	103915050	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3291.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	3.43	4.15	0.0	4.05	0.93	1.61	3.17	3.1	2.5
Merged-chr12-41438678-3	chr12	41438168	41439168	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	47389.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	6.86	7.83	5.55	10.8	7.0	3.22	7.39	8.4	1.25
Merged-chr9-86544741-3	chr9	86544248	86545248	+	905.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 33 of 38)	intron (NM_177208, intron 33 of 38)	27094.0	NM_001163746	109785.0	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	8.01	5.53	5.55	6.75	7.93	6.43	14.79	15.92	18.74
Merged-chr9-104604854-1	chr9	104604354	104605354	+	905.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	35371.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	10.3	9.22	0.92	16.19	12.13	8.04	4.22	0.44	3.75
Merged-chr18-60978043-3	chr18	60977535	60978535	+	905.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 15 of 17)	intron (NM_177407, intron 15 of 17)	14481.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	25.17	23.96	25.9	37.78	41.52	32.15	66.54	38.91	26.85
Merged-chr17-31437222-2	chr17	31436690	31437690	+	905.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008804, intron 4 of 18)	L1MD1|LINE|L1	50956.0	NM_001163748	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	3.43	3.69	0.0	4.05	2.33	3.22	1.06	0.44	3.75
Merged-chr9-103336673-3	chr9	103336178	103337178	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 19 of 27)	Tigger1|DNA|TcMar-Tigger	28301.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	17.16	27.19	24.05	35.09	26.59	28.94	32.74	50.85	38.72
Merged-chr17-47609405-3	chr17	47608910	47609910	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016859, intron 1 of 6)	L2|LINE|L2	2082.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	36.04	24.42	30.52	11.47	18.66	30.54	25.35	26.97	33.72
Merged-chr2-49349891-3	chr2	49349376	49350376	+	905.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-101610.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	5.15	13.82	23.12	9.45	21.46	18.49	11.62	7.07	3.75
Merged-chr1-64377956-3	chr1	64377448	64378448	+	905.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154856.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	29.17	48.38	44.4	39.81	31.72	55.46	38.02	28.74	33.72
Merged-chr10-41958900-3	chr10	41958367	41959367	+	905.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 10 of 17)	intron (NM_001034858, intron 10 of 17)	59515.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	17.16	32.25	21.27	37.78	37.32	38.58	49.64	27.86	40.59
Merged-chr3-96305165-3	chr3	96304639	96305639	+	905.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-11170.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	23.45	14.28	8.32	26.99	12.6	22.51	57.03	38.91	26.85
Merged-chr12-79015103-1	chr12	79014603	79015603	+	905.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7826.0	NM_178745	268567.0	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	6.86	4.15	0.0	59.38	43.85	80.38	4.22	3.54	1.87
Merged-chr5-103472880-3	chr5	103472389	103473389	+	905.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	47697.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	24.03	27.65	13.87	36.43	34.06	17.68	41.19	37.58	16.24
Merged-chr2-62648807-3	chr2	62648306	62649306	+	905.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2551.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	19.45	16.59	21.27	16.19	12.13	19.29	28.52	15.48	18.74
Merged-chr9-107556514-3	chr9	107555992	107556992	+	905.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019713, intron 1 of 4)	B2_Mm2|SINE|B2	1909.0	NM_019713	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	34.32	49.3	53.65	46.56	36.85	61.89	68.65	71.63	64.95
Merged-chr8-41133659-3	chr8	41133129	41134129	+	905.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005863)	promoter-TSS (NM_001005863)	97.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	7.44	1.84	11.1	0.67	2.33	1.61	4.22	4.42	2.5
Merged-chr8-120110412-3	chr8	120109895	120110895	+	905.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3757.0	NM_001163762	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	101.25	139.62	138.74	126.17	94.7	167.19	182.72	170.23	138.02
Merged-chr5-141038564-3	chr5	141038054	141039054	+	905.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37958.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	11.44	11.98	5.55	16.19	4.2	13.66	17.96	9.73	11.24
Merged-chr16-95752697-3	chr16	95752201	95753201	+	905.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50294.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	18.88	11.06	3.7	16.87	6.53	1.61	17.96	9.29	8.12
Merged-chr9-44652179-3	chr9	44651681	44652681	+	905.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21052.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	8.01	3.69	0.0	8.1	7.93	1.61	5.28	3.98	6.87
Merged-chr1-151661783-3	chr1	151661276	151662276	+	905.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	90403.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	27.46	21.2	7.4	36.43	16.33	22.51	20.07	19.01	11.87
Merged-chr9-65293225-3	chr9	65292715	65293715	+	905.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1045.0	NM_011802	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	45.19	36.86	23.12	72.19	30.32	33.76	55.98	53.5	22.48
Merged-chrX-13798955-3	chrX	13798473	13799473	+	905.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 1 of 26)	ORR1E|LTR|ERVL-MaLR	47583.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	16.59	24.42	5.55	9.45	12.13	14.47	19.01	22.55	13.74
Merged-chr7-75500999-3	chr7	75500512	75501512	+	905.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	MTE2a|LTR|ERVL-MaLR	45478.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	18.31	7.83	5.55	7.42	8.86	4.82	11.62	3.54	5.0
Merged-chr5-92093904-3	chr5	92093400	92094400	+	905.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-10156.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	76.66	94.46	67.52	56.0	74.17	68.32	98.23	100.37	71.2
Merged-chr7-19698258-3	chr7	19697737	19698737	+	905.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009696, exon 2 of 4)	5' UTR (NM_009696, exon 2 of 4)	161.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	29.75	25.34	34.22	43.86	28.46	42.6	54.92	69.42	43.72
Merged-chr8-75071818-3	chr8	75071446	75072446	+	905.05835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21672.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	18.31	5.53	24.05	12.82	7.0	20.9	17.96	7.07	7.49
Merged-chr19-21115939-3	chr19	21115433	21116433	+	905.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11223.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	13.73	12.44	14.8	18.89	15.39	32.96	22.18	19.01	18.74
Merged-chr11-117990137-3	chr11	117989603	117990603	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	intron (NR_151726, intron 1 of 9)	3246.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	57.78	49.76	48.1	60.72	40.12	24.92	53.87	42.45	23.73
Merged-chr14-47377176-3	chr14	47376701	47377701	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	3341.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	34.9	44.24	11.1	82.99	85.84	80.38	83.44	104.35	35.6
Merged-chr13-76751232-1	chr13	76750732	76751732	+	905.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 6 of 20)	intron (NM_030174, intron 6 of 20)	366271.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	1.14	4.15	7.4	4.72	2.33	2.41	4.22	6.63	5.62
Merged-chr4-149666076-1	chr4	149665576	149666576	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	ID_B1|SINE|B4	-2760.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	63.5	61.75	74.0	73.54	47.12	36.97	54.92	43.33	32.48
Merged-chr9-70842016-3	chr9	70841526	70842526	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	92782.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	131.0	129.48	98.05	120.1	92.37	108.51	103.51	152.99	64.95
Merged-chr19-4144094-3	chr19	4143585	4144585	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_206973, exon 2 of 2)	3' UTR (NM_206973, exon 2 of 2)	4286.0	NM_206973	269053.0	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	50.34	50.69	49.95	59.38	37.79	57.07	36.97	28.74	51.21
Merged-chr9-68956712-2	chr9	68956213	68957213	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	191367.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	12.59	10.6	4.62	4.72	3.27	4.02	3.17	0.88	5.62
Merged-chr6-113837449-1	chr6	113836949	113837949	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036684, intron 2 of 19)	MIRb|SINE|MIR	54090.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	9.15	4.61	11.1	11.47	5.13	8.84	6.34	7.96	3.75
Merged-chr1-86492447-1	chr1	86491947	86492947	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34110.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	56.63	36.4	32.37	24.96	28.92	36.97	53.87	31.84	21.23
Merged-chr19-53781052-3	chr19	53780557	53781557	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	103751.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	14.3	9.22	16.65	13.49	14.0	4.82	22.18	25.65	36.22
Merged-chr6-129353960-1	chr6	129353460	129354460	+	905.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177686, intron 3 of 5)	intron (NM_177686, intron 3 of 5)	3716.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	8.58	13.36	14.8	11.47	5.13	6.43	28.52	13.71	16.86
Merged-chr2-91052151-2	chr2	91051649	91052649	+	905.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-1867.0	NM_008948	19182.0	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	16.59	25.34	31.45	20.92	19.59	26.53	29.57	13.71	19.98
Merged-chr1-185224386-1	chr1	185223886	185224886	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 2 of 34)	L1M4|LINE|L1	-18540.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	41.76	31.33	38.85	45.21	23.79	24.92	27.46	26.09	21.86
Merged-chr1-88456901-1	chr1	88456401	88457401	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	49891.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	2.29	2.3	0.92	1.35	0.47	3.22	2.11	0.88	0.0
Merged-chr2-53011467-1	chr2	53010967	53011967	+	905.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	153599.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	14.87	7.37	11.1	8.77	6.53	11.25	10.56	8.84	9.37
Merged-chr14-25461974-3	chr14	25461481	25462481	+	904.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	2796.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	112.69	94.92	63.82	143.04	94.7	95.65	69.71	72.96	32.48
Merged-chr2-93217222-3	chr2	93216715	93217715	+	904.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 5 of 9)	intron (NM_183180, intron 5 of 9)	29667.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	11.44	5.07	3.7	7.42	3.73	2.41	5.28	1.33	1.87
Merged-chr9-27023790-3	chr9	27023278	27024278	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178027, intron 1 of 5)	intron (NM_178027, intron 1 of 5)	6316.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	1.14	1.38	5.55	0.67	3.73	8.84	4.22	3.98	16.24
Merged-chr2-90939953-3	chr2	90939470	90940470	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017368)	promoter-TSS (NM_017368)	-427.0	NM_198683	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	25.17	9.68	22.2	20.92	8.86	18.49	20.07	14.15	18.74
Merged-chr9-59551220-3	chr9	59550713	59551713	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	11673.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	52.63	63.13	74.0	51.28	42.92	65.11	60.2	56.6	48.71
Merged-chr13-115097134-3	chr13	115096632	115097632	+	904.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	4832.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	12.59	11.98	9.25	10.12	6.53	1.61	4.22	11.5	8.12
Merged-chr10-79924040-5	chr10	79923549	79924549	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	RLTR12A|LTR|ERVK	-2994.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	33.75	31.79	44.4	39.81	27.52	71.54	51.75	49.08	43.72
Merged-chr7-17090320-3	chr7	17089842	17090842	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310628, intron 1 of 5)	intron (NM_001310628, intron 1 of 5)	16302.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	18.88	21.2	24.97	6.75	5.13	12.86	19.01	21.67	13.12
Merged-chr2-104888183-3	chr2	104887697	104888697	+	904.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177600, intron 1 of 17)	MIRb|SINE|MIR	1873.0	NM_177600	211936.0	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	6.86	11.98	11.1	13.49	7.0	8.84	10.56	11.05	8.12
Merged-chr5-3503940-2	chr5	3503453	3504453	+	904.9166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-39880.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	55.49	48.84	21.27	65.45	49.45	49.83	40.14	41.12	27.48
Merged-chr10-20046313-3	chr10	20045832	20046832	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	-102588.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	17.73	26.26	19.42	30.36	24.72	21.7	25.35	22.11	18.74
Merged-chr16-44126667-3	chr16	44126187	44127187	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	12572.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	74.94	78.79	45.32	76.92	65.31	52.25	111.96	110.98	48.09
Merged-chr2-145510880-3	chr2	145510386	145511386	+	904.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	44096.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	5.15	11.52	11.1	7.42	4.2	8.84	3.17	7.07	8.12
Merged-chr18-4351418-2	chr18	4350910	4351910	+	904.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	1543.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	124.14	118.88	97.12	112.68	108.7	90.02	162.65	130.88	96.8
Merged-chr4-123611231-4	chr4	123610710	123611710	+	904.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	B1_Mus2|SINE|Alu	-5210.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	88.67	77.41	77.7	107.95	59.25	78.77	111.96	128.67	86.18
Merged-chr3-27283565-2	chr3	27283074	27284074	+	904.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33503.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.58	2.76	0.0	47.9	32.19	24.92	21.12	26.53	14.36
Merged-chr5-123683771-3	chr5	123683278	123684278	+	904.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	CpG	583.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	211.09	191.69	176.67	223.33	219.26	180.85	249.26	142.82	120.53
Merged-chr2-29890443-3	chr2	29889939	29890939	+	904.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013615, intron 1 of 16)	CpG	376.0	NM_013615	18286.0	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	67.5	46.08	61.05	35.09	34.99	40.19	46.47	38.91	25.61
Merged-chr17-47842465-3	chr17	47841950	47842950	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7759.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	10.3	5.07	3.7	10.12	9.33	12.06	13.73	9.73	7.49
Merged-chr3-146584135-3	chr3	146583620	146584620	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019957, intron 6 of 6)	(GA)n|Simple_repeat|Simple_repeat	-13029.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	37.76	30.41	9.25	60.05	64.84	33.76	24.29	16.8	11.87
Merged-chr9-106242982-3	chr9	106242486	106243486	+	904.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020559, intron 3 of 10)	intron (NM_020559, intron 3 of 10)	4744.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	20.59	20.74	34.22	39.81	25.66	22.51	46.47	33.16	29.35
Merged-chrX-53607922-1	chrX	53607422	53608422	+	904.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028375)	promoter-TSS (NM_028375)	0.0	NM_028375	72865.0	Mm.158897	NM_028375	ENSMUSG00000051851	Rtl8c	2900027G03Rik|Cxx1c|Mar8.1|Mart8a	retrotransposon Gag like 8C	protein-coding	8.58	9.22	11.1	12.14	13.06	17.68	13.73	7.96	0.0
Merged-chr10-117147870-6	chr10	117147367	117148367	+	904.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	CpG	607.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	113.84	112.43	114.69	114.7	48.98	81.99	125.69	93.3	81.19
Merged-chr16-81200644-4	chr16	81200110	81201110	+	904.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010954)	promoter-TSS (NM_010954)	-87.0	NM_001113208	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	6.29	2.76	1.85	2.02	0.93	3.22	3.17	1.33	0.0
Merged-chr10-68465061-3	chr10	68464550	68465550	+	904.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	76825.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	5.15	5.07	0.0	4.72	5.13	0.0	6.34	5.31	0.0
Merged-chr9-40730927-2	chr9	40730406	40731406	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	44942.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	60.64	67.74	29.6	78.27	66.24	69.13	5.28	3.1	5.0
Merged-chr15-80037397-3	chr15	80036895	80037895	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4a|LINE|L1	-22587.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	50.34	48.38	56.42	65.45	57.38	74.75	64.43	69.42	49.34
Merged-chr17-27057114-3	chr17	27056650	27057650	+	904.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080553)	promoter-TSS (NM_080553)	-154.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	112.69	97.23	68.45	98.51	74.64	110.12	57.03	69.86	51.84
Merged-chr16-14378781-3	chr16	14378271	14379271	+	904.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	17213.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	10.87	11.52	5.55	6.07	9.8	8.04	9.51	6.63	2.5
Merged-chr2-166656353-3	chr2	166655841	166656841	+	904.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57491.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	37.76	28.11	20.35	35.09	24.26	27.33	44.36	25.2	27.48
Merged-chr3-59241761-3	chr3	59241260	59242260	+	904.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 20 of 43)	intron (NM_177855, intron 20 of 43)	21225.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	65.21	46.08	9.25	40.48	35.92	19.29	21.12	20.78	24.98
Merged-chrX-73639394-2	chrX	73638898	73639898	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029352)	promoter-TSS (NM_029352)	-43.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.57	1.38	0.0	4.72	0.47	3.22	1.06	0.88	0.0
Merged-chr15-9629888-3	chr15	9629399	9630399	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305042, intron 25 of 36)	intron (NM_001305042, intron 25 of 36)	-100023.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	16.59	5.53	9.25	15.52	10.26	3.22	10.56	6.19	5.62
Merged-chr2-119336118-3	chr2	119335622	119336622	+	904.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019454)	TTS (NM_019454)	-9925.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	29.75	25.34	24.97	33.74	12.6	25.72	25.35	16.8	21.86
Merged-chr12-110978621-2	chr12	110978131	110979131	+	904.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361917)	promoter-TSS (NM_001361917)	-13.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	132.14	87.55	68.45	78.27	69.04	43.4	99.28	58.81	18.11
Merged-chr10-17727767-5	chr10	17727230	17728230	+	904.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4502.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	26.31	27.65	23.12	22.27	18.19	19.29	16.9	25.65	23.11
Merged-chr1-186202726-2	chr1	186202212	186203212	+	904.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85402.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	16.02	19.81	17.57	6.75	14.46	7.23	0.0	2.65	2.5
Merged-chr13-41606954-3	chr13	41606442	41607442	+	904.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	726.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	212.8	282.92	172.97	194.99	208.53	162.37	253.48	328.53	134.9
Merged-chrX-20379790-3	chrX	20379286	20380286	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290643, intron 2 of 5)	RMER15|LTR|ERVL	15305.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	53.2	46.08	18.5	45.21	51.78	21.7	62.31	55.71	21.86
Merged-chr17-74874578-3	chr17	74874071	74875071	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-130958.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	15.45	12.9	13.87	23.62	8.4	8.84	8.45	9.73	16.24
Merged-chr7-100446503-3	chr7	100445990	100446990	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 28 of 32)	intron (NM_001017985, intron 28 of 32)	-26501.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	29.75	34.1	19.42	49.25	34.06	33.76	41.19	37.58	24.36
Merged-chr12-36190568-3	chr12	36190067	36191067	+	904.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	27651.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	26.31	20.74	22.2	16.19	15.86	24.92	9.51	14.15	11.24
Merged-chr7-92975513-3	chr7	92974994	92975994	+	904.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100241.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	10.3	7.37	3.7	4.72	3.27	11.25	5.28	5.31	3.75
Merged-chr16-92430903-3	chr16	92430404	92431404	+	904.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-30826.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	24.03	29.49	27.75	47.23	46.65	43.4	27.46	26.09	23.73
Merged-chr3-38202421-3	chr3	38201913	38202913	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040541)	TTS (NR_040541)	5706.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	9.72	6.91	7.4	34.41	32.19	29.74	57.03	53.94	29.98
Merged-chr7-125542057-3	chr7	125541544	125542544	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10238.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	24.6	28.57	19.42	22.27	10.26	8.84	41.19	35.37	20.61
Merged-chr10-127421696-3	chr10	127421201	127422201	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	834.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	131.0	155.75	81.4	103.91	88.64	66.71	126.74	142.82	105.55
Merged-chr13-42244617-3	chr13	42244110	42245110	+	904.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56866.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	22.31	15.21	9.25	38.46	22.86	5.63	30.63	15.03	6.87
Merged-chr2-35452593-2	chr2	35452083	35453083	+	904.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	8866.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	46.34	58.52	49.95	40.48	51.78	50.64	26.4	38.03	21.23
Merged-chr13-113800422-3	chr13	113799919	113800919	+	904.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	5911.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	11.44	14.28	1.85	6.07	5.6	4.82	2.11	5.31	6.25
Merged-chr3-93547342-3	chr3	93546886	93547886	+	904.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7731.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	3.43	5.07	8.32	6.75	0.93	1.61	3.17	3.98	3.75
Merged-chr6-148352732-1	chr6	148352232	148353232	+	904.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 5 of 19)	intron (NM_198967, intron 5 of 19)	-1924.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	11.44	12.9	9.25	8.77	9.8	19.29	4.22	3.54	7.49
Merged-chr12-3860872-2	chr12	3860361	3861361	+	904.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045884, intron 3 of 3)	intron (NR_045884, intron 3 of 3)	1383.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	30.89	13.82	15.72	33.06	15.39	39.39	49.64	36.7	16.86
Merged-chr10-81603005-3	chr10	81602507	81603507	+	904.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-2107.0	NM_001346695	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	10.3	5.53	5.55	5.4	3.73	11.25	4.22	5.31	5.62
Merged-chr10-19216451-3	chr10	19215937	19216937	+	904.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	49199.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	25.17	28.57	30.52	31.04	17.73	27.33	32.74	42.45	21.23
Merged-chr3-127634239-3	chr3	127633715	127634715	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009718, exon 2 of 2)	exon (NM_009718, exon 2 of 2)	1079.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	5.72	3.69	0.0	2.02	2.33	4.82	4.22	2.65	1.25
Merged-chr9-7571733-3	chr9	7571232	7572232	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 1 of 9)	intron (NM_001310717, intron 1 of 9)	336.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	86.95	153.9	115.62	151.14	179.14	143.07	194.34	325.44	143.02
Merged-chr6-108827720-3	chr6	108827218	108828218	+	904.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138677)	promoter-TSS (NM_138677)	-923.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	60.64	91.24	55.5	54.65	52.72	49.03	80.27	91.09	28.73
Merged-chr1-20933631-2	chr1	20933111	20934111	+	904.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355122, intron 2 of 2)	intron (NM_001355122, intron 2 of 2)	15771.0	NM_001355122	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	3.43	3.23	0.0	1.35	2.33	1.61	0.0	0.0	3.12
Merged-chr6-108340541-2	chr6	108340048	108341048	+	904.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 5 of 61)	L2a|LINE|L2	127452.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	28.6	21.2	11.1	16.19	21.93	16.08	2.11	1.77	1.25
Merged-chr6-38381481-3	chr6	38380958	38381958	+	904.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153600)	promoter-TSS (NM_153600)	-66.0	NM_153600	264134.0	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|Ift56|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	45.19	36.4	9.25	26.31	30.79	30.54	48.58	27.41	21.23
Merged-chr1-40116604-3	chr1	40116071	40117071	+	904.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010555, intron 5 of 8)	intron (NM_010555, intron 5 of 8)	30478.0	NM_001360800	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	4.0	1.84	1.85	2.02	2.33	3.22	2.11	1.77	3.75
Merged-chr6-87187089-3	chr6	87186594	87187594	+	904.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 16 of 17)	intron (NM_054041, intron 16 of 17)	82348.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	14.3	5.99	3.7	8.1	6.53	1.61	10.56	9.29	6.25
Merged-chr2-53200702-2	chr2	53200194	53201194	+	904.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022989, intron 2 of 3)	intron (NM_022989, intron 2 of 3)	8610.0	NM_022989	65103.0	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	25.17	27.19	22.2	10.8	15.39	22.51	19.01	23.88	23.73
Merged-chr17-74819789-2	chr17	74819284	74820284	+	904.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	RMER19C|LTR|ERVK	102034.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	24.6	10.14	18.5	18.22	24.26	10.45	25.35	28.3	16.24
Merged-chr4-136895521-1	chr4	136895021	136896021	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007572)	TTS (NM_007572)	-2607.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	94.96	74.65	86.02	122.8	99.37	128.61	54.92	71.19	58.08
Merged-chr10-112774463-1	chr10	112773963	112774963	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040579, intron 5 of 6)	L1MEf|LINE|L1	47537.0	NR_040579	69355.0	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	2.29	3.23	3.7	5.4	3.27	3.22	2.11	3.98	5.0
Merged-chr4-42987592-2	chr4	42987106	42988106	+	904.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009503, intron 7 of 16)	RLTR12B|LTR|ERVK	12901.0	NM_009503	269523.0	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	5.15	9.22	11.1	8.77	6.53	9.65	15.84	14.15	12.49
Merged-chr3-96770192-3	chr3	96769681	96770681	+	904.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	CT-rich|Low_complexity|Low_complexity	42570.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	21.74	28.57	37.92	19.57	22.39	36.97	25.35	25.65	21.86
Merged-chr15-25370399-3	chr15	25369907	25370907	+	904.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	43357.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	9.72	5.99	23.12	24.96	17.26	19.29	24.29	15.48	13.74
Merged-chr6-135937525-3	chr6	135937010	135938010	+	904.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	ID_B1|SINE|B4	236001.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	4.58	8.75	3.7	18.22	13.06	14.47	73.93	45.54	24.36
Merged-chr2-168473102-2	chr2	168472642	168473642	+	904.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117223.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	16.02	15.67	3.7	22.27	32.66	19.29	6.34	1.77	3.75
Merged-chrX-140541857-3	chrX	140541367	140542367	+	904.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077364, intron 3 of 3)	intron (NM_001077364, intron 3 of 3)	801.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	80.09	117.5	92.5	96.48	68.11	36.97	81.33	118.5	70.57
Merged-chr1-155901514-3	chr1	155901002	155902002	+	904.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039184, exon 24 of 38)	exon (NM_001039184, exon 24 of 38)	71753.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	18.31	19.35	8.32	18.89	17.73	17.68	92.94	86.22	47.46
Merged-chr2-35397745-3	chr2	35397257	35398257	+	904.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080709)	promoter-TSS (NM_001080709)	-583.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	13.16	11.06	7.4	12.82	7.93	10.45	10.56	5.75	6.87
Merged-chr12-85123791-3	chr12	85123275	85124275	+	904.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030225, exon 10 of 15)	exon (NM_030225, exon 10 of 15)	12942.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	106.97	67.27	37.92	128.2	86.77	86.01	65.48	53.5	34.35
Merged-chr6-40476340-3	chr6	40475850	40476850	+	904.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212468, intron 3 of 6)	intron (NM_212468, intron 3 of 6)	4882.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	10.87	12.9	18.5	12.14	10.73	8.04	13.73	11.5	14.36
Merged-chr1-86202819-3	chr1	86202317	86203317	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 17 of 20)	intron (NM_027456, intron 17 of 20)	48037.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	12.01	7.37	1.85	10.12	6.53	9.65	3.17	4.86	5.0
Merged-chrX-12015221-3	chrX	12014717	12015717	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65336.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.01	11.98	5.55	18.22	10.26	13.66	12.67	19.01	3.75
Merged-chr6-48504366-3	chr6	48503852	48504852	+	904.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015597)	promoter-TSS (NR_015597)	13.0	NR_027808	58894.0	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	8.58	10.6	16.65	4.05	7.93	9.65	27.46	16.8	18.74
Merged-chr15-36518007-3	chr15	36517487	36518487	+	904.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025712, intron 11 of 13)	B3|SINE|B2	-21196.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	6.29	0.46	3.7	1.35	5.13	0.0	0.0	1.77	6.25
Merged-chr6-7845818-3	chr6	7845334	7846334	+	904.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	intron (NM_052993, intron 1 of 3)	610.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	36.61	39.63	17.57	41.83	45.25	50.64	36.97	33.16	24.36
Merged-chr15-7129489-4	chr15	7129011	7130011	+	904.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113386)	promoter-TSS (NM_001113386)	-61.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	14.3	13.82	32.37	14.17	11.2	19.29	21.12	17.69	19.36
Merged-chr5-122145550-2	chr5	122145052	122146052	+	904.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7490.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	53.77	55.75	63.82	56.68	48.52	88.42	94.0	97.28	93.68
Merged-chr3-109425702-2	chr3	109425223	109426223	+	904.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85040.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.72	10.14	4.62	0.67	5.13	1.61	6.34	6.63	4.37
Merged-chr2-59211889-3	chr2	59211392	59212392	+	904.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	L3|LINE|CR1	51042.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	14.3	21.2	10.17	26.99	16.79	12.86	19.01	18.13	8.74
Merged-chr4-3780531-3	chr4	3780036	3781036	+	904.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	B3A|SINE|B2	55119.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	20.59	11.52	17.57	14.84	7.93	12.86	13.73	17.24	13.12
Merged-chr15-59524213-3	chr15	59523716	59524716	+	904.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-124438.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	33.75	25.34	16.65	33.74	17.73	20.9	40.14	17.69	14.36
Merged-chr8-84567681-3	chr8	84567184	84568184	+	904.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007578, exon 21 of 47)	exon (NM_007578, exon 21 of 47)	95168.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	60.07	69.12	55.5	90.41	70.91	58.68	7.39	3.54	5.0
Merged-chr5-21034646-3	chr5	21034166	21035166	+	904.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356590, exon 1 of 19)	5' UTR (NM_001356590, exon 1 of 19)	581.0	NM_001356592	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	46.34	52.99	24.97	48.58	31.26	42.6	55.98	59.25	52.46
Merged-chr8-104116680-3	chr8	104116170	104117170	+	904.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	ORR1F|LTR|ERVL-MaLR	-10797.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	43.48	32.25	24.05	43.86	30.32	61.09	65.48	49.96	46.84
Merged-chr10-117883733-3	chr10	117883234	117884234	+	904.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-37760.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	22.31	21.2	8.32	35.09	19.59	25.72	15.84	18.57	19.36
Merged-chr12-8864657-3	chr12	8864159	8865159	+	904.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56648.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	8.58	15.67	8.32	12.82	10.26	16.88	9.51	5.75	5.0
Merged-chrX-77810903-4	chrX	77810372	77811372	+	904.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14912.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	29.17	33.64	23.12	27.66	44.78	28.94	40.14	36.26	24.98
Merged-chr11-105424507-3	chr11	105424011	105425011	+	904.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039242, intron 4 of 5)	intron (NM_001039242, intron 4 of 5)	32224.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	26.31	17.05	22.2	47.9	24.26	28.13	38.02	19.9	16.86
Merged-chr8-126571279-3	chr8	126570820	126571820	+	904.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22116.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	16.59	5.07	12.95	14.17	13.06	10.45	13.73	7.52	1.25
Merged-chr9-61243571-3	chr9	61243076	61244076	+	904.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1ME|LINE|L1	50233.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	14.3	11.52	9.25	8.1	1.87	3.22	10.56	2.21	4.37
Merged-chr3-105894175-1	chr3	105893675	105894675	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-10246.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	70.93	108.28	72.15	90.41	55.05	81.18	84.49	131.77	76.82
Merged-chr11-3331937-1	chr11	3331437	3332437	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178149, exon 2 of 6)	exon (NM_178149, exon 2 of 6)	1206.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	4.58	7.83	1.85	11.47	10.26	4.02	11.62	7.96	5.0
Merged-chr19-31764395-2	chr19	31763903	31764903	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013833, intron 1 of 17)	CpG	630.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	9.15	3.69	5.55	15.52	11.2	11.25	7.39	1.33	1.87
Merged-chr8-38294491-1	chr8	38293991	38294991	+	904.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 1 of 7)	RLTR45|LTR|ERVK	-42289.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.57	0.46	5.55	2.7	1.4	1.61	2.11	4.42	8.74
Merged-chr4-127148056-3	chr4	127147557	127148557	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21147.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	16.02	14.75	14.8	8.77	6.53	20.09	10.56	11.05	22.48
Merged-chr12-16887646-2	chr12	16887138	16888138	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7340.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	20.02	16.13	15.72	18.22	13.06	5.63	3.17	3.1	3.75
Merged-chr9-37098654-1	chr9	37098154	37099154	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	48668.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.0	0.92	3.7	2.7	1.87	3.22	4.22	4.86	3.75
Merged-chr6-33514737-1	chr6	33514237	33515237	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	265609.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	47.48	42.39	31.45	33.74	42.45	36.97	40.14	47.31	21.86
Merged-chr7-29214578-1	chr7	29214078	29215078	+	904.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164658)	promoter-TSS (NM_001164658)	-545.0	NM_001164658	320225.0	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	cation channel sperm associated auxiliary subunit gamma 1	protein-coding	4.58	6.45	13.87	5.4	2.8	17.68	8.45	3.54	11.87
Merged-chr11-22672027-1	chr11	22671527	22672527	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159744.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	5.72	5.99	1.85	10.8	6.53	6.43	6.34	4.42	13.74
Merged-chr4-154942101-1	chr4	154941601	154942601	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14024.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	50.34	56.22	31.45	52.63	41.05	56.27	6.34	0.44	11.24
Merged-chr13-51316475-1	chr13	51315975	51316975	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-92143.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	12.01	9.68	4.62	18.22	7.46	9.65	13.73	7.07	5.62
Merged-chr6-124374774-1	chr6	124374274	124375274	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10288.0	NR_131162	72268.0	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	93.82	148.37	91.57	105.93	128.76	120.57	61.26	99.93	42.47
Merged-chr12-34433588-1	chr12	34433088	34434088	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 5 of 27)	intron (NM_001271386, intron 5 of 27)	95301.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	34.9	38.25	48.1	41.83	42.45	48.23	38.02	50.85	40.59
Merged-chr17-43327472-2	chr17	43326980	43327980	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32951.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	28.6	17.97	10.17	51.28	53.18	45.01	85.55	92.86	39.35
Merged-chr12-32191159-2	chr12	32190659	32191659	+	904.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020272, intron 10 of 10)	intron (NM_020272, intron 10 of 10)	17179.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	1.72	7.37	6.47	6.07	7.93	8.84	6.34	9.29	14.36
Merged-chr15-66818354-3	chr15	66817812	66818812	+	904.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	13517.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	42.33	59.9	40.7	45.21	44.32	64.3	34.85	29.18	46.22
Merged-chr9-46098949-3	chr9	46098450	46099450	+	903.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	86130.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	36.61	32.72	22.2	29.69	30.32	41.8	33.8	37.14	23.73
Merged-chr18-82717526-3	chr18	82717019	82718019	+	903.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2762.0	NR_039572	100628586.0		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	6.86	5.07	0.0	11.47	3.73	0.0	3.17	1.33	5.0
Merged-chr2-164835031-3	chr2	164834524	164835524	+	903.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038492, intron 5 of 14)	intron (NM_001038492, intron 5 of 14)	1251.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	90.96	63.13	49.95	140.34	90.97	105.3	148.92	130.0	59.95
Merged-chr1-92331702-2	chr1	92331192	92332192	+	903.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	132850.0	NR_105865	102465542.0		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	9.15	4.61	12.95	3.37	2.33	7.23	1.06	0.88	6.25
Merged-chr10-77607482-4	chr10	77606905	77607905	+	903.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301671, intron 1 of 3)	B1_Mur4|SINE|Alu	807.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	270.58	289.83	180.37	319.82	303.7	221.85	286.23	349.75	117.41
Merged-chr2-164878701-3	chr2	164878218	164879218	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146129)	promoter-TSS (NM_146129)	-650.0	NM_146129	228866.0	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	120.13	85.25	90.65	91.76	73.24	77.97	130.97	137.07	91.18
Merged-chr1-84284574-3	chr1	84284081	84285081	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001003948)	promoter-TSS (NM_001003948)	64.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	18.88	21.66	20.35	24.29	21.93	38.58	20.07	8.84	16.86
Merged-chr7-127387218-3	chr7	127386720	127387720	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030226)	promoter-TSS (NM_030226)	-54.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	20.59	15.67	5.55	25.64	37.79	49.03	43.3	42.01	25.61
Merged-chr6-113690611-3	chr6	113690117	113691117	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 10 of 11)	RLTR35B_MM|LTR|ERVL	-6433.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	40.04	18.89	32.37	35.76	26.59	55.46	25.35	16.8	19.36
Merged-chr1-84883133-3	chr1	84882609	84883609	+	903.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 2 of 3)	intron (NM_025386, intron 2 of 3)	43268.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	9.15	4.15	3.7	8.77	8.4	8.84	12.67	5.31	4.37
Merged-chr2-25587970-3	chr2	25587460	25588460	+	903.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 8 of 14)	intron (NM_001024616, intron 8 of 14)	-7861.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	66.93	45.62	39.77	100.53	88.64	55.46	65.48	60.58	24.98
Merged-chrX-167316008-3	chrX	167315498	167316498	+	903.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	L2b|LINE|L2	14573.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	27.46	24.88	21.27	29.69	42.45	28.13	23.24	22.99	13.74
Merged-chr15-25414671-5	chr15	25414125	25415125	+	903.8583369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027395)	promoter-TSS (NM_027395)	433.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	21.74	11.98	3.7	23.62	22.86	7.23	25.35	30.07	19.98
Merged-chr4-5645224-2	chr4	5644731	5645731	+	903.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	1141.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	9.15	12.44	11.1	11.47	23.79	11.25	14.79	14.15	6.25
Merged-chr9-72987849-2	chr9	72987353	72988353	+	903.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	2349.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	6.29	8.29	15.72	3.37	4.67	4.82	8.45	1.33	11.24
Merged-chr10-44459477-3	chr10	44459051	44460051	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007548)	promoter-TSS (NM_007548)	-803.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	93.82	99.07	98.05	83.66	65.78	110.12	89.78	103.47	78.07
Merged-chr15-97590883-3	chr15	97590393	97591393	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114929.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	23.45	22.12	37.0	27.66	26.59	29.74	38.02	22.99	16.86
Merged-chr10-13987543-3	chr10	13987024	13988024	+	903.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	21145.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	200.79	191.69	140.59	224.01	212.73	191.3	240.81	261.32	101.8
Merged-chr9-37430768-3	chr9	37430258	37431258	+	903.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164767, intron 1 of 27)	intron (NM_001164767, intron 1 of 27)	2417.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	6.86	3.23	1.85	3.37	0.47	3.22	1.06	1.33	4.37
Merged-chr12-85973735-3	chr12	85973221	85974221	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	105320.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	22.88	34.56	28.67	121.45	100.3	89.22	69.71	74.28	38.1
Merged-chr6-114282792-3	chr6	114282286	114283286	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_178703, exon 1 of 16)	5' UTR (NM_178703, exon 1 of 16)	151.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.0	3.23	0.0	6.07	2.33	0.0	5.28	0.0	5.0
Merged-chr5-92318342-3	chr5	92317853	92318853	+	903.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8329.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	16.59	17.05	13.87	14.84	7.93	23.31	27.46	30.07	14.99
Merged-chr12-103336983-4	chr12	103336578	103337578	+	903.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18923.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	130.43	113.81	129.49	146.41	90.97	90.02	179.55	141.49	88.06
Merged-chr2-72323232-3	chr2	72322713	72323713	+	903.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	37512.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.72	6.45	14.8	8.77	2.8	3.22	4.22	4.86	2.5
Merged-chr15-100447143-1	chr15	100446643	100447643	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21868.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.0	3.69	1.85	8.1	5.13	6.43	7.39	3.54	5.0
Merged-chr18-36379533-1	chr18	36379033	36380033	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081365, intron 2 of 2)	MIRb|SINE|MIR	30909.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	4.58	3.69	0.92	6.07	5.13	6.43	5.28	3.1	8.12
Merged-chr2-38927314-3	chr2	38926800	38927800	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010264)	promoter-TSS (NM_010264)	-839.0	NM_010264	14536.0	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	26.89	13.82	7.4	39.13	18.19	29.74	23.24	19.9	9.37
Merged-chr14-65064813-3	chr14	65064305	65065305	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360385, intron 3 of 5)	RMER10B|LTR|ERVL	33301.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	17.73	20.74	12.02	19.57	10.73	10.45	15.84	14.59	19.98
Merged-chr5-59854988-3	chr5	59854499	59855499	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131003.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	2.86	5.53	1.85	3.37	5.6	4.82	7.39	7.96	7.49
Merged-chr1-135630026-3	chr1	135629499	135630499	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32223.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	46.91	39.17	53.65	75.57	61.58	83.59	58.09	59.69	45.59
Merged-chr4-59368324-3	chr4	59367820	59368820	+	903.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 9 of 16)	intron (NM_001163288, intron 9 of 16)	70313.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	14.87	9.68	14.8	24.29	14.93	13.66	7.39	7.52	8.12
Merged-chr3-101802902-1	chr3	101802402	101803402	+	903.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33321.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.29	3.69	5.55	3.37	4.67	2.41	1.06	2.21	1.25
Merged-chr7-78864608-2	chr7	78864117	78865117	+	903.616699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17406.0	NM_029585	76375.0	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	7.44	14.75	18.5	7.42	10.73	16.88	15.84	11.94	13.74
Merged-chr13-13553876-3	chr13	13553369	13554369	+	903.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-36540.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	3.43	8.75	9.25	8.1	9.8	1.61	7.39	4.86	7.49
Merged-chr8-11452211-3	chr8	11451719	11452719	+	903.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25710.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	213.95	209.66	110.99	253.02	189.4	180.05	211.24	199.42	97.43
Merged-chr17-17890242-3	chr17	17889746	17890746	+	903.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008039, intron 1 of 1)	intron (NM_008039, intron 1 of 1)	2422.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	70.93	82.94	40.7	64.77	73.71	46.62	106.67	70.75	41.22
Merged-chr10-84163943-3	chr10	84163420	84164420	+	903.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63223.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	7.44	9.22	4.62	20.24	12.13	6.43	9.51	7.52	5.0
Merged-chr13-37776936-3	chr13	37776438	37777438	+	903.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49100.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	61.21	52.99	66.6	64.1	43.85	54.66	59.15	63.67	34.35
Merged-chr7-68748501-3	chr7	68748069	68749069	+	903.5238039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042592, intron 1 of 7)	intron (NM_001042592, intron 1 of 7)	669.0	NM_001042592	66412.0	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	78.37	85.25	87.87	74.89	82.57	116.55	105.62	87.55	79.94
Merged-chr9-108608180-3	chr9	108607757	108608757	+	903.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151664, intron 12 of 15)	B1_Mus1|SINE|Alu	-10645.0	NR_151688	74443.0	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|HIF-PH4|HPH-4|P4H-TM|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	6.86	5.99	7.4	9.45	6.53	4.02	1.06	5.75	6.87
Merged-chr4-40267882-2	chr4	40267371	40268371	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134097, intron 2 of 2)	intron (NM_134097, intron 2 of 2)	-1708.0	NM_001349093	100504309.0	Mm.392019	NM_001349093		Smim27	2010003O02Rik|Toporsos	small integral membrane protein 27	protein-coding	55.49	57.6	34.22	74.22	51.32	45.82	51.75	66.77	47.46
Merged-chr5-101994039-2	chr5	101993541	101994541	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75880.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	67.5	71.88	57.35	8.77	3.73	24.92	74.99	65.88	58.08
Merged-chrX-39341174-1	chrX	39340674	39341674	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5092.0	NM_001177380	78631.0	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	0.57	2.76	0.0	2.02	5.13	4.82	2.11	1.33	3.12
Merged-chr5-93195869-3	chr5	93195355	93196355	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017367, intron 2 of 6)	intron (NM_017367, intron 2 of 6)	10640.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	46.91	76.03	39.77	52.63	43.85	48.23	54.92	39.35	28.1
Merged-chr5-136953883-3	chr5	136953385	136954385	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	610.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	54.35	66.81	88.8	74.89	64.84	108.51	100.34	103.47	63.7
Merged-chr13-38010271-2	chr13	38009794	38010794	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027724, intron 11 of 12)	intron (NM_027724, intron 11 of 12)	-16086.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.43	1.38	5.55	6.07	3.27	5.63	11.62	13.71	8.74
Merged-chr11-82526292-2	chr11	82525789	82526789	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107064.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	12.01	10.14	5.55	5.4	3.27	4.82	27.46	9.29	5.0
Merged-chr16-55808460-2	chr16	55807939	55808939	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13699.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.44	4.15	2.77	2.02	2.8	6.43	2.11	3.1	5.62
Merged-chr16-23290433-2	chr16	23289921	23290921	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252506)	promoter-TSS (NM_001252506)	-49.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	12.01	5.53	12.95	13.49	10.26	15.27	10.56	8.4	17.49
Merged-chr8-61896955-2	chr8	61896445	61897445	+	903.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	5745.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.15	7.83	7.4	10.12	7.0	3.22	4.22	4.42	3.75
Merged-chr1-191095754-3	chr1	191095251	191096251	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2663.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	78.94	67.27	45.32	48.58	38.72	39.39	78.16	64.56	44.97
Merged-chr5-135015684-2	chr5	135015185	135016185	+	903.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2528.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	5.15	6.91	1.85	4.05	0.93	3.22	2.11	3.54	2.5
Merged-chr4-128797027-3	chr4	128796544	128797544	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 1 of 8)	L1M5|LINE|L1	9068.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	14.3	11.98	12.02	29.01	11.66	15.27	12.67	10.17	12.49
Merged-chr3-121602275-3	chr3	121601786	121602786	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41199.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	5.15	11.52	8.32	12.14	13.53	22.51	31.69	20.34	33.72
Merged-chr10-50702533-3	chr10	50702023	50703023	+	903.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 16 of 41)	MTD|LTR|ERVL-MaLR	109854.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	17.16	13.36	14.8	18.89	15.39	8.84	23.24	16.8	14.36
Merged-chr8-26023890-3	chr8	26023361	26024361	+	903.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_207659, exon 22 of 22)	3' UTR (NM_207659, exon 22 of 22)	-8260.0	NM_008033	14272.0	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	35.47	29.95	44.4	23.62	36.85	53.05	19.01	14.15	9.37
Merged-chr3-41038810-5	chr3	41038267	41039267	+	903.4133300000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44279.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	46.91	72.34	47.17	45.21	27.06	24.11	71.82	56.6	38.1
Merged-chr13-113269985-3	chr13	113269491	113270491	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60332.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	12.01	4.61	3.7	12.14	1.4	4.82	5.28	4.42	0.0
Merged-chr12-25251928-3	chr12	25251419	25252419	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122745.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	4.0	2.3	5.55	6.07	5.6	3.22	6.34	7.96	1.25
Merged-chr13-43565610-3	chr13	43565108	43566108	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5417.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	12.59	9.68	3.7	11.47	1.87	4.02	3.17	3.54	3.75
Merged-chr2-153609800-3	chr2	153609347	153610347	+	903.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22934.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	4.58	0.92	1.85	4.72	1.4	4.82	2.11	0.88	2.5
Merged-chr15-27680767-3	chr15	27680327	27681327	+	903.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	715.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	122.42	151.6	93.42	176.1	183.8	129.41	205.96	221.53	113.04
Merged-chr12-31954421-2	chr12	31953933	31954933	+	903.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4188.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	2.86	4.61	3.7	7.42	5.6	3.22	22.18	11.05	16.24
Merged-chr1-54795444-3	chr1	54794954	54795954	+	903.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	MTD|LTR|ERVL-MaLR	130933.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	26.31	20.74	7.4	31.04	18.66	11.25	16.9	11.5	9.99
Merged-chr6-87521415-3	chr6	87520889	87521889	+	903.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	ORR1F|LTR|ERVL-MaLR	11870.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	22.31	17.97	11.1	32.39	20.53	8.04	17.96	21.67	10.62
Merged-chr14-55479009-5	chr14	55478525	55479525	+	903.3599849999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	267.0	NM_030686	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	25.17	31.79	14.8	39.13	37.79	45.01	39.08	23.88	48.71
Merged-chr5-135446152-3	chr5	135445649	135446649	+	903.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 8 of 30)	L1MC3|LINE|L1	-51603.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	36.04	26.26	24.97	56.0	38.72	40.19	32.74	36.7	16.24
Merged-chr5-104053167-2	chr5	104052662	104053662	+	903.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028794, intron 2 of 7)	intron (NM_028794, intron 2 of 7)	5159.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	5.72	8.29	5.55	9.45	10.73	3.22	2.11	9.73	5.0
Merged-chr16-18416394-1	chr16	18415894	18416894	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-2900.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	32.61	38.71	25.9	29.01	38.25	45.82	26.4	13.27	21.23
Merged-chr13-109547896-1	chr13	109547396	109548396	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	Lx6|LINE|L1	223152.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.29	1.84	0.92	2.7	3.27	3.22	1.06	4.42	5.0
Merged-chr6-135177461-3	chr6	135176906	135177906	+	903.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-9191.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	5.72	7.83	9.25	8.77	2.8	1.61	7.39	0.88	1.25
Merged-chr2-150878854-1	chr2	150878354	150879354	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	25877.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	17.73	7.37	1.85	18.22	16.79	8.04	12.67	9.29	13.74
Merged-chr2-156295921-1	chr2	156295421	156296421	+	903.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 13 of 17)	intron (NM_172674, intron 13 of 17)	-16552.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	30.32	47.46	21.27	53.98	50.85	47.42	87.66	82.69	36.85
Merged-chr19-6679880-3	chr19	6679416	6680416	+	903.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-136846.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	6.86	11.06	6.47	7.42	4.2	5.63	8.45	3.54	8.74
Merged-chr9-73001740-3	chr9	73001235	73002235	+	903.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114328, exon 5 of 8)	exon (NM_001114328, exon 5 of 8)	16231.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	44.05	53.91	25.9	48.58	54.11	56.27	33.8	37.58	24.36
Merged-chr14-72783375-3	chr14	72782864	72783864	+	903.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73361.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	1.72	5.99	0.0	7.42	2.33	4.82	5.28	5.31	3.12
Merged-chr19-37523908-2	chr19	37523418	37524418	+	903.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26500.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	20.02	14.28	28.67	25.64	14.93	20.09	25.35	25.65	13.74
Merged-chr3-95694053-3	chr3	95693562	95694562	+	903.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6145.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	32.61	26.73	18.5	43.86	27.52	22.51	54.92	37.14	34.35
Merged-chr2-28793143-1	chr2	28792643	28793643	+	903.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 11 of 12)	RLTR34C_MM|LTR|ERVK	47217.0	NM_172977	269252.0	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	3.43	2.3	0.0	4.72	2.33	9.65	1.06	0.88	5.62
Merged-chr3-89389215-3	chr3	89388716	89389716	+	903.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-1545.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	21.74	29.03	27.75	21.59	9.8	36.97	21.12	21.22	36.22
Merged-chr15-77626680-3	chr15	77626226	77627226	+	903.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16560.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	14.87	12.44	11.1	41.16	42.45	11.25	22.18	12.82	21.23
Merged-chr7-3411359-1	chr7	3410859	3411859	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133190, intron 2 of 3)	intron (NM_133190, intron 2 of 3)	-3707.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	1.72	2.3	6.47	2.7	0.93	1.61	2.11	0.0	0.0
Merged-chr2-148073932-1	chr2	148073432	148074432	+	903.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26963.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.43	4.15	2.77	1.35	3.27	3.22	47.53	84.01	26.85
Merged-chr15-89170310-3	chr15	89169802	89170802	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159521, intron 3 of 37)	intron (NM_001159521, intron 3 of 37)	3649.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	36.04	32.72	42.55	34.41	24.72	36.97	34.85	22.99	24.98
Merged-chr9-114785556-3	chr9	114785071	114786071	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-3578.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	48.62	47.46	62.9	27.66	44.78	66.71	68.65	73.4	43.72
Merged-chr10-82795503-3	chr10	82794982	82795982	+	903.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16641.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	5.72	9.22	0.0	18.89	14.46	13.66	6.34	5.75	5.0
Merged-chr19-37047993-2	chr19	37047511	37048511	+	903.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	121932.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	16.02	17.05	24.05	33.74	32.19	20.9	110.9	170.68	73.69
Merged-chr4-129987928-3	chr4	129987417	129988417	+	903.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199696, intron 1 of 28)	CpG	2839.0	NM_173071	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	12.01	1.38	3.7	3.37	2.8	0.8	2.11	0.44	2.5
Merged-chr12-85533805-3	chr12	85533304	85534304	+	903.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	59914.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	355.82	310.57	137.82	305.65	251.45	238.73	216.52	280.78	192.35
Merged-chr10-67736787-3	chr10	67736309	67737309	+	903.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-164850.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	13.73	12.44	3.7	19.57	11.66	16.08	27.46	35.37	9.99
Merged-chr13-90089109-3	chr13	90088590	90089590	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025335)	promoter-TSS (NM_025335)	518.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	94.96	94.0	83.25	69.5	87.24	98.87	102.45	133.98	84.94
Merged-chr6-129498029-3	chr6	129497533	129498533	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	9132.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	5.72	6.91	1.85	5.4	3.27	11.25	4.22	0.88	3.75
Merged-chr6-50974026-3	chr6	50973532	50974532	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	197917.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.58	9.22	9.25	9.45	12.6	8.84	45.42	34.93	41.84
Merged-chr13-58999291-3	chr13	58998786	58999786	+	903.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	191589.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	139.01	207.35	122.09	123.47	181.94	180.85	168.99	203.4	123.66
Merged-chr10-121454272-2	chr10	121453780	121454780	+	903.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	21970.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	24.6	12.9	5.55	27.66	13.06	8.84	4.22	4.42	5.0
Merged-chr15-66801726-3	chr15	66801228	66802228	+	903.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	30101.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	33.18	16.13	23.12	49.93	34.52	22.51	26.4	26.53	3.75
Merged-chr19-26666547-3	chr19	26666056	26667056	+	903.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 10 of 32)	intron (NM_011416, intron 10 of 32)	61396.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	16.02	12.44	5.55	14.17	14.46	16.08	10.56	7.96	7.49
Merged-chr8-68196206-3	chr8	68195712	68196712	+	903.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80316.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	130.43	189.84	102.67	137.64	85.37	82.79	108.79	132.21	98.05
Merged-chr5-64290163-3	chr5	64289676	64290676	+	903.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	59819.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	32.04	26.26	32.37	29.69	31.26	27.33	23.24	24.32	21.86
Merged-chr16-33894679-3	chr16	33894189	33895189	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	ORR1D2|LTR|ERVL-MaLR	65024.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	37.18	23.5	42.55	42.51	27.99	41.8	43.3	38.91	27.48
Merged-chr14-122986621-3	chr14	122986193	122987193	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3410.0	NR_153663	70551.0	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	11.44	9.22	9.25	3.37	7.0	13.66	15.84	16.36	18.74
Merged-chr13-97295540-3	chr13	97295002	97296002	+	903.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54397.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	28.6	13.36	11.1	12.82	3.27	10.45	4.22	1.77	6.87
Merged-chr16-43979784-3	chr16	43979276	43980276	+	903.035706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-726.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	25.17	23.5	2.77	21.59	19.13	22.51	16.9	14.59	8.74
Merged-chr3-87360578-2	chr3	87360046	87361046	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2665.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	89.81	109.67	73.07	108.63	95.63	110.92	247.15	245.4	69.95
Merged-chr17-86787318-1	chr17	86786818	86787818	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	33454.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.15	5.07	0.0	8.77	7.46	4.82	1.06	0.0	8.12
Merged-chrX-53005119-1	chrX	53004619	53005619	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 3 of 8)	B2_Mm2|SINE|B2	17041.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	2.29	5.99	0.0	6.07	4.67	1.61	1.06	4.86	6.25
Merged-chr1-162649409-1	chr1	162648909	162649909	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010865, exon 3 of 3)	3' UTR (NM_010865, exon 3 of 3)	8810.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	4.58	0.92	1.85	14.84	2.33	4.82	3.17	2.21	3.75
Merged-chr6-148354640-2	chr6	148354140	148355140	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003634)	promoter-TSS (NR_003634)	-16.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	3.43	5.99	9.25	11.47	13.06	9.65	17.96	22.11	9.37
Merged-chr4-141500781-2	chr4	141500265	141501265	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	37832.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	3.43	6.45	8.32	12.82	6.06	9.65	24.29	30.95	24.98
Merged-chr4-35980800-1	chr4	35980300	35981300	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-135596.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	2.86	5.07	7.4	6.07	7.93	24.92	4.22	4.86	3.75
Merged-chr5-67437681-2	chr5	67437187	67438187	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9888.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	6.29	1.84	0.0	10.12	8.4	9.65	3.17	0.44	1.25
Merged-chr8-35633537-1	chr8	35633037	35634037	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	B4A|SINE|B4	-44517.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	17.16	12.9	12.02	20.92	14.93	23.31	33.8	15.92	11.87
Merged-chr9-55326769-3	chr9	55326274	55327274	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357568)	promoter-TSS (NM_001357568)	-139.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	18.31	9.68	5.55	19.57	14.93	12.06	20.07	4.86	3.75
Merged-chr11-54693928-1	chr11	54693428	54694428	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252496, intron 28 of 28)	intron (NM_001252496, intron 28 of 28)	93775.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	9.15	7.37	3.7	4.72	2.33	12.06	3.17	1.77	3.75
Merged-chr7-122693915-1	chr7	122693415	122694415	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019430, intron 1 of 3)	intron (NM_019430, intron 1 of 3)	22171.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	9.15	6.45	11.1	6.75	4.67	8.84	10.56	8.4	12.49
Merged-chr14-26669000-3	chr14	26668473	26669473	+	903.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106132)	TTS (NR_106132)	635.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	75.51	116.58	67.52	83.66	94.23	102.88	83.44	86.66	95.55
Merged-chr13-6241074-1	chr13	6240574	6241574	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-307083.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	13.73	13.36	3.7	12.14	15.86	8.84	10.56	7.07	3.75
Merged-chr7-38108487-1	chr7	38107987	38108987	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-997.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	76.08	65.89	72.15	103.91	73.24	75.56	79.21	76.05	31.85
Merged-chr7-7374710-1	chr7	7374210	7375210	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24917.0	NM_001105062	100042591.0	Mm.469891	NM_001105062	ENSMUSG00000096373	Vmn2r31	-	vomeronasal 2, receptor 31	protein-coding	5.15	5.07	0.0	5.4	8.86	10.45	14.79	16.36	8.74
Merged-chrUn_JH584304-65950-1	chrUn_JH584304	65450	66450	+	903.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6261.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	63.37	36.7	0.0
Merged-chr16-73956652-1	chr16	73956152	73957152	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001358492, exon 17 of 27)	exon (NM_001358492, exon 17 of 27)	385415.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	9.15	1.84	1.85	3.37	7.46	5.63	3.17	3.54	0.0
Merged-chr10-42153031-1	chr10	42152531	42153531	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123711.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	5.72	7.37	5.55	8.77	1.4	8.04	1.06	2.21	1.25
Merged-chr12-21264377-2	chr12	21263884	21264884	+	903.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004364, intron 23 of 26)	intron (NM_001004364, intron 23 of 26)	21900.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	4.0	8.75	25.9	2.02	6.06	5.63	21.12	5.75	16.86
Merged-chr11-115164532-3	chr11	115164030	115165030	+	902.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	1189.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	135.58	86.63	72.15	112.68	55.98	42.6	107.73	88.43	46.22
Merged-chr4-80310832-3	chr4	80310339	80311339	+	902.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-523374.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	28.03	31.33	35.15	33.06	37.79	45.82	42.25	49.52	31.23
Merged-chr10-86929165-3	chr10	86928675	86929675	+	902.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 25 of 68)	intron (NM_138673, intron 25 of 68)	78767.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	24.03	15.21	11.1	18.89	12.13	16.88	19.01	11.5	11.24
Merged-chr1-60940784-3	chr1	60940285	60941285	+	902.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31760.0	NM_001281976	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	51.48	46.54	31.45	47.23	39.19	46.62	45.42	56.16	43.72
Merged-chr17-84121515-3	chr17	84121020	84122020	+	902.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42860.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	39.47	31.79	47.17	35.76	27.52	26.53	42.25	31.84	17.49
Merged-chr11-114850969-3	chr11	114850425	114851425	+	902.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110337)	promoter-TSS (NM_001110337)	-607.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	47.48	23.04	30.52	51.28	37.32	61.89	31.69	40.68	23.73
Merged-chr16-5049210-2	chr16	5048752	5049752	+	902.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356320)	promoter-TSS (NM_001356320)	658.0	NM_001359747	74022.0	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	279.16	387.98	317.26	294.85	386.27	258.02	284.11	359.48	176.74
Merged-chr4-123342936-3	chr4	123342412	123343412	+	902.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001256019, exon 1 of 7)	5' UTR (NM_001256019, exon 1 of 7)	340.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	4.58	3.69	2.77	8.1	1.87	4.02	6.34	3.1	1.25
Merged-chr19-5622116-2	chr19	5621626	5622626	+	902.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-12032.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	28.6	36.86	33.3	29.01	33.59	41.8	45.42	39.8	34.97
Merged-chr7-96946772-2	chr7	96946264	96947264	+	902.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-4763.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	17.73	12.9	27.75	20.92	17.26	16.08	8.45	5.31	6.25
Merged-chr6-136964781-3	chr6	136964226	136965226	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10203.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	21.17	17.97	5.55	16.19	13.06	15.27	39.08	41.12	18.74
Merged-chr3-127792361-3	chr3	127791856	127792856	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	1699.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	175.62	182.01	176.67	168.68	110.1	88.42	138.36	178.64	98.05
Merged-chr4-8803276-3	chr4	8802768	8803768	+	902.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	51944.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	14.3	13.36	7.4	38.46	28.92	17.68	15.84	28.3	13.12
Merged-chr5-16553927-1	chr5	16553427	16554427	+	902.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289461)	promoter-TSS (NM_001289461)	26.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	78.37	86.17	50.87	85.01	69.51	67.52	101.39	97.72	45.59
Merged-chr10-86074322-2	chr10	86073821	86074821	+	902.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 8 of 13)	intron (NM_013722, intron 8 of 13)	-21533.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	13.73	17.51	14.8	5.4	7.93	12.86	45.42	25.2	15.61
Merged-chr3-96239133-3	chr3	96238608	96239608	+	902.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	19.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	50.91	18.43	23.12	42.51	16.79	21.7	21.12	11.94	9.99
Merged-chr8-18619256-2	chr8	18618722	18619722	+	902.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173189, intron 3 of 13)	B3|SINE|B2	24091.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	4.0	3.23	3.7	2.7	7.93	9.65	5.28	1.77	11.24
Merged-chr8-36995480-3	chr8	36995002	36996002	+	902.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039220)	TTS (NM_001039220)	1927.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	28.6	24.42	24.97	38.46	25.19	34.56	32.74	30.51	21.86
Merged-chr17-64747687-3	chr17	64747190	64748190	+	902.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 20 of 21)	intron (NM_008549, intron 20 of 21)	-19421.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	38.9	23.96	25.9	65.45	41.99	66.71	15.84	20.78	21.23
Merged-chr5-113840621-1	chr5	113840121	113841121	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10120.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	10.3	8.29	10.17	12.14	7.46	9.65	16.9	7.07	2.5
Merged-chr13-23582833-4	chr13	23582345	23583345	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178194)	TTS (NM_178194)	1243.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	70.36	79.25	40.7	43.18	50.85	39.39	63.37	63.67	51.21
Merged-chr10-121796226-1	chr10	121795726	121796726	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 18 of 21)	intron (NM_001081037, intron 18 of 21)	56296.0	NM_173022	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	1.72	1.38	2.77	2.7	2.33	3.22	3.17	0.88	2.5
Merged-chr3-115694319-2	chr3	115693826	115694826	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20729.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	10.87	8.75	0.0	16.19	16.33	36.97	15.84	7.96	8.74
Merged-chr10-82818260-2	chr10	82817771	82818771	+	902.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038042, intron 1 of 2)	intron (NR_038042, intron 1 of 2)	6148.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	16.02	5.99	10.17	24.96	22.86	9.65	41.19	27.41	13.74
Merged-chr16-23492984-3	chr16	23492474	23493474	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359083, intron 4 of 10)	MIR3|SINE|MIR	27841.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	12.01	11.52	25.9	16.87	9.8	8.04	19.01	12.82	8.74
Merged-chr2-33138700-3	chr2	33138193	33139193	+	902.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 16 of 16)	intron (NM_001290570, intron 16 of 16)	-7257.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	23.45	14.28	27.75	26.31	9.8	23.31	9.51	18.57	20.61
Merged-chr10-117277969-3	chr10	117277453	117278453	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_017372, exon 4 of 4)	3' UTR (NM_017372, exon 4 of 4)	4319.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	38.9	35.94	48.1	45.21	30.79	30.54	25.35	30.51	31.85
Merged-chr13-37489421-1	chr13	37488921	37489921	+	902.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144076.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.29	1.38	9.25	4.05	1.4	4.82	47.53	37.14	9.37
Merged-chr4-19901295-3	chr4	19900789	19901789	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	21277.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	21.17	20.74	20.35	16.87	22.86	11.25	9.51	7.07	2.5
Merged-chr1-84200094-3	chr1	84199595	84200595	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	MLT1H1|LTR|ERVL-MaLR	18866.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	21.17	24.88	16.65	23.62	17.73	15.27	25.35	9.29	16.86
Merged-chr10-62411178-1	chr10	62410678	62411678	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145419, intron 4 of 17)	intron (NM_145419, intron 4 of 17)	11279.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	2.29	0.92	1.85	4.05	4.2	2.41	5.28	1.77	0.0
Merged-chr8-72323283-3	chr8	72322768	72323768	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4206.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	97.82	110.59	73.07	120.77	89.57	127.8	86.61	103.02	71.2
Merged-chr11-53466788-2	chr11	53466279	53467279	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290789, exon 7 of 7)	exon (NM_001290789, exon 7 of 7)	9574.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	5.15	1.38	1.85	2.7	2.8	1.61	2.11	1.77	3.75
Merged-chr9-109000921-3	chr9	109000427	109001427	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	intron (NR_153430, intron 3 of 13)	9025.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	12.59	8.75	5.55	5.4	4.2	4.82	6.34	8.84	8.12
Merged-chr10-80747596-3	chr10	80747107	80748107	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5332.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	10.87	1.38	0.92	8.77	2.33	3.22	6.34	2.21	5.62
Merged-chr15-94601531-3	chr15	94601033	94602033	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11709.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	4.58	4.61	0.0	5.4	2.33	3.22	7.39	2.65	3.75
Merged-chr18-55197406-3	chr18	55196915	55197915	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204824.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	14.87	11.52	11.1	18.22	13.53	18.49	24.29	22.11	15.61
Merged-chr14-70797183-1	chr14	70796683	70797683	+	902.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22802.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	4.58	9.68	7.4	4.72	2.33	18.49	20.07	4.42	14.36
Merged-chr12-88408410-1	chr12	88407910	88408910	+	902.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361601, intron 3 of 8)	BC1_Mm|scRNA|scRNA	-31087.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	2.86	1.84	1.85	4.72	5.13	4.82	5.28	11.05	8.12
Merged-chr3-103830880-3	chr3	103830385	103831385	+	902.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D2|LTR|ERVK	-1811.0	NM_001142959	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	2.86	4.61	3.7	7.42	1.87	9.65	6.34	2.65	0.0
Merged-chr17-64748073-2	chr17	64747564	64748564	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 20 of 21)	Lx7|LINE|L1	-19047.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	41.19	28.11	42.55	73.54	47.58	77.16	21.12	22.99	18.74
Merged-chr1-88278346-3	chr1	88277862	88278862	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198652)	promoter-TSS (NM_198652)	-783.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	25.17	30.41	45.32	22.94	28.46	20.9	29.57	16.8	29.98
Merged-chr12-79755257-2	chr12	79754753	79755753	+	902.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	169480.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	23.45	21.2	7.4	38.46	25.66	9.65	16.9	15.03	8.74
Merged-chr1-152428482-3	chr1	152427955	152428955	+	902.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	28588.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	19.45	12.9	7.4	28.34	12.13	11.25	6.34	11.94	12.49
Merged-chr13-5988654-3	chr13	5988141	5989141	+	902.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	127152.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	5.15	2.3	5.55	3.37	8.86	4.82	6.34	6.63	12.49
Merged-chr19-17278576-3	chr19	17278097	17279097	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60908.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	3.43	4.61	1.85	5.4	5.6	0.8	10.56	11.94	11.24
Merged-chr9-37489803-3	chr9	37489303	37490303	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146222, exon 1 of 4)	exon (NM_146222, exon 1 of 4)	482.0	NM_146222	235184.0	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	45.19	31.33	31.45	49.93	25.19	63.5	58.09	18.13	34.97
Merged-chr15-99421350-3	chr15	99420828	99421828	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001001884)	TTS (NM_001001884)	28109.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	38.33	29.95	14.8	53.3	54.11	32.15	43.3	53.5	23.11
Merged-chr9-122923112-3	chr9	122922612	122923612	+	902.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009544)	promoter-TSS (NM_009544)	34.0	NM_009544	22646.0	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	14.87	13.36	11.1	11.47	11.2	19.29	24.29	21.22	14.36
Merged-chr5-75044068-2	chr5	75043543	75044543	+	902.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028850, intron 1 of 5)	CpG	598.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	207.08	223.48	165.57	165.31	181.94	118.96	228.14	165.37	145.51
Merged-chr11-62866865-2	chr11	62866372	62867372	+	902.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033669, intron 8 of 12)	MIR|SINE|MIR	-12583.0	NM_001356520	67510.0	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	5.72	2.3	3.7	8.1	3.73	3.22	8.45	1.77	2.5
Merged-chr13-23488904-3	chr13	23488407	23489407	+	902.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175938)	promoter-TSS (NM_175938)	-50.0	NM_001289614	238555.0	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	4.0	0.0	9.25	0.0	1.87	2.41	0.0	0.88	0.62
Merged-chr4-131920300-3	chr4	131919824	131920824	+	902.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102393)	promoter-TSS (NR_102393)	-295.0	NR_102393	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	128.71	98.15	42.55	149.79	88.64	102.08	57.03	33.6	38.72
Merged-chr5-123586028-3	chr5	123585551	123586551	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359223)	TTS (NM_001359223)	-13036.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	18.88	8.29	9.25	21.59	14.93	20.9	21.12	11.05	16.86
Merged-chr2-84538162-3	chr2	84537669	84538669	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31296.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	6.29	5.07	1.85	17.54	10.73	1.61	3.17	3.54	6.25
Merged-chr12-104836420-3	chr12	104835916	104836916	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040682, intron 1 of 12)	Lx7|LINE|L1	28660.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	5.15	5.99	1.85	3.37	1.4	2.41	3.17	2.65	6.25
Merged-chr19-21946671-3	chr19	21946175	21947175	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168335.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.58	5.99	3.7	6.75	14.93	11.25	22.18	20.34	6.87
Merged-chr6-113121002-3	chr6	113120489	113121489	+	902.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173005, exon 13 of 21)	exon (NM_173005, exon 13 of 21)	16054.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	12.59	21.2	29.6	20.92	13.53	27.33	9.51	13.27	11.24
Merged-chr8-114473794-3	chr8	114473285	114474285	+	902.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	34133.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	8.58	11.98	7.4	12.14	8.86	17.68	6.34	4.86	8.12
Merged-chr6-122724862-3	chr6	122724364	122725364	+	902.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	17299.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	16.59	17.51	8.32	17.54	10.26	29.74	16.9	17.24	16.86
Merged-chr9-106306924-3	chr9	106306435	106307435	+	902.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 8 of 10)	intron (NM_027354, intron 8 of 10)	25874.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	13.73	20.27	7.4	11.47	10.73	7.23	17.96	22.55	18.11
Merged-chr10-95525123-3	chr10	95524624	95525624	+	902.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	9962.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	18.88	17.97	22.2	26.31	10.73	15.27	25.35	15.48	18.74
Merged-chr19-45675308-1	chr19	45674808	45675808	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15115.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	29.75	18.43	12.02	22.27	21.93	13.66	42.25	41.12	12.49
Merged-chr9-107747524-3	chr9	107747033	107748033	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153190, intron 16 of 23)	intron (NR_153190, intron 16 of 23)	23469.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	38.33	35.02	42.55	36.43	20.53	53.05	30.63	19.01	34.35
Merged-chr11-77185181-1	chr11	77184681	77185681	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	3787.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	4.0	4.61	22.2	7.42	12.13	13.66	7.39	2.65	1.25
Merged-chr3-20132972-1	chr3	20132472	20133472	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355261, intron 5 of 7)	intron (NM_001355261, intron 5 of 7)	22144.0	NM_001355261	27357.0	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|GN1|Gyg1	glycogenin	protein-coding	4.0	6.45	1.85	8.1	4.67	4.82	6.34	6.19	0.0
Merged-chr19-36899834-2	chr19	36899333	36900333	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	19766.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	6.29	7.37	16.65	4.05	4.67	0.0	30.63	22.55	6.87
Merged-chr11-90558877-1	chr11	90558377	90559377	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011505, intron 12 of 17)	intron (NM_011505, intron 12 of 17)	79231.0	NM_011505	20913.0	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	3.43	5.07	3.7	5.4	6.06	8.84	5.28	1.77	1.25
Merged-chr10-7142488-3	chr10	7141981	7142981	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172546, intron 5 of 12)	intron (NM_172546, intron 5 of 12)	69756.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.0	2.3	1.85	5.4	5.6	11.25	4.22	3.54	2.5
Merged-chr10-88584614-3	chr10	88584105	88585105	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175418, intron 2 of 28)	intron (NM_175418, intron 2 of 28)	20547.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	16.59	5.07	6.47	13.49	8.4	16.08	25.35	13.71	5.0
Merged-chr14-93674946-2	chr14	93674454	93675454	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	215715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	9.72	3.69	7.4	12.82	7.93	1.61	8.45	7.07	5.0
Merged-chr5-90909163-3	chr5	90908668	90909668	+	902.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5269.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.86	5.99	0.0	5.4	3.27	1.61	2.11	3.1	1.25
Merged-chr3-19451189-1	chr3	19450689	19451689	+	902.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57406.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.14	0.92	2.77	1.35	2.8	0.8	2.11	3.1	1.25
Merged-chr10-99211144-3	chr10	99210649	99211649	+	902.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52082.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	112.12	128.56	87.87	121.45	83.51	56.27	192.23	149.89	49.34
Merged-chr11-36942135-3	chr11	36941621	36942621	+	902.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011856, intron 1 of 28)	intron (NM_011856, intron 1 of 28)	2120.0	NM_001290702	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	10.3	14.28	7.4	18.89	10.26	24.11	32.74	46.87	13.74
Merged-chr4-101328837-3	chr4	101328334	101329334	+	902.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18193.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	44.62	28.57	37.92	43.18	39.19	36.97	42.25	37.14	27.48
Merged-chrX-75084125-3	chrX	75083623	75084623	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	intron (NM_181584, intron 1 of 9)	782.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	89.81	99.07	78.62	58.7	77.44	65.91	80.27	85.78	58.71
Merged-chrX-142540451-3	chrX	142539940	142540940	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139907.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	12.01	16.59	22.2	17.54	12.6	9.65	11.62	11.94	0.62
Merged-chr17-28709201-3	chr17	28708698	28709698	+	902.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	16630.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	86.38	117.96	74.92	76.92	79.77	94.85	69.71	69.42	58.08
Merged-chr19-12010528-3	chr19	12010011	12011011	+	902.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26229.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	168.76	117.96	99.89	141.02	113.83	118.96	148.92	169.35	78.69
Merged-chr6-86599446-3	chr6	86598922	86599922	+	902.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28752.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	9.15	10.14	4.62	6.07	3.73	0.0	9.51	2.21	2.5
Merged-chr15-9132746-2	chr15	9132244	9133244	+	902.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	7710.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	56.63	94.0	58.27	46.56	58.31	53.85	62.31	66.33	39.35
Merged-chr4-140958019-2	chr4	140957529	140958529	+	902.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045911)	promoter-TSS (NR_045911)	-127.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	16.59	10.6	14.8	22.94	12.13	8.04	28.52	24.32	6.87
Merged-chr13-62971053-3	chr13	62970536	62971536	+	902.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 1 of 15)	intron (NM_001289926, intron 1 of 15)	6143.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	24.03	31.79	14.8	24.96	23.79	16.08	22.18	20.34	11.24
Merged-chr8-22124912-2	chr8	22124382	22125382	+	902.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	185.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	4.58	3.23	7.4	14.84	5.13	2.41	3.17	0.44	4.37
Merged-chr19-34519839-2	chr19	34519324	34520324	+	902.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	7650.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	143.01	178.32	136.89	160.58	154.41	155.93	174.27	225.51	149.26
Merged-chr13-51843997-3	chr13	51843486	51844486	+	902.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2689.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	23.45	23.5	47.17	19.57	16.33	22.51	31.69	18.57	5.0
Merged-chr2-139919082-2	chr2	139918586	139919586	+	902.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110352, intron 9 of 12)	Lx8|LINE|L1	147719.0	NM_001159640	75812.0	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	7.44	5.07	10.17	11.47	6.06	10.45	14.79	5.75	8.12
Merged-chr10-11281852-2	chr10	11281358	11282358	+	902.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168297, intron 1 of 2)	CpG	271.0	NM_001168297	71865.0	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	143.59	107.36	86.02	159.23	111.96	112.53	140.47	80.92	49.96
Merged-chr18-34886159-3	chr18	34885658	34886658	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24951.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	10.3	12.9	9.25	14.84	13.53	6.43	17.96	11.94	10.62
Merged-chr18-32694855-3	chr18	32694358	32695358	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-120525.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	25.17	32.72	59.2	31.04	25.19	24.92	38.02	29.18	42.47
Merged-chr14-122292633-1	chr14	122292133	122293133	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-58995.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	6.86	7.83	13.87	10.8	12.13	8.84	19.01	11.5	9.99
Merged-chr13-67527244-3	chr13	67526722	67527722	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133228)	promoter-TSS (NM_133228)	-991.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	15.45	20.74	24.97	25.64	23.33	20.9	34.85	33.6	43.72
Merged-chr12-108249663-1	chr12	108249163	108250163	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159910, intron 1 of 5)	intron (NM_001159910, intron 1 of 5)	25754.0	NM_001159910	668158.0	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	4.58	5.53	0.0	0.67	0.0	0.0	0.0	0.44	1.25
Merged-chr6-94700291-1	chr6	94699791	94700791	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008377)	promoter-TSS (NM_008377)	-146.0	NM_008377	16206.0	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.57	0.46	0.0	4.72	3.27	1.61	0.0	0.0	2.5
Merged-chr14-72938964-3	chr14	72938496	72939496	+	902.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-86607.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	5.15	10.14	1.85	4.72	1.4	1.61	3.17	5.75	4.37
Merged-chr11-4237666-1	chr11	4237166	4238166	+	902.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013365, intron 1 of 2)	intron (NM_001013365, intron 1 of 2)	881.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	1.72	1.84	11.1	16.87	8.4	9.65	5.28	0.88	3.12
Merged-chr1-191181435-6	chr1	191180937	191181937	+	902.319458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	1896.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	136.72	110.13	61.97	104.58	61.58	28.94	126.74	89.32	39.97
Merged-chr5-147051059-2	chr5	147050547	147051547	+	902.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	25525.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	72.08	68.2	58.27	47.23	28.46	35.37	30.63	23.43	19.98
Merged-chr17-12990926-3	chr17	12990420	12991420	+	902.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175394, intron 1 of 5)	B3|SINE|B2	1339.0	NM_001113533	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	102.97	123.49	83.25	122.12	110.1	115.75	140.47	183.94	86.18
Merged-chr11-61774927-3	chr11	61774431	61775431	+	902.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013881)	TTS (NM_013881)	-12843.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	37.76	41.47	20.35	36.43	27.52	40.99	31.69	27.86	43.09
Merged-chr3-84679079-3	chr3	84678581	84679581	+	902.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	12889.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	5.15	6.45	7.4	11.47	6.53	12.06	7.39	3.98	1.87
Merged-chr5-122697463-2	chr5	122696962	122697962	+	902.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10082.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	56.63	35.02	11.1	47.23	23.33	22.51	8.45	12.82	6.87
Merged-chrX-103746425-3	chrX	103745929	103746929	+	902.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009197, intron 1 of 5)	MTD|LTR|ERVL-MaLR	75559.0	NM_009197	20502.0	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	6.29	4.15	0.0	2.02	4.67	3.22	6.34	3.54	3.75
Merged-chrX-18163302-5	chrX	18162829	18163829	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 1 of 28)	CpG	754.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	195.64	237.76	228.46	184.2	212.26	177.64	193.28	201.19	161.13
Merged-chr11-100931751-3	chr11	100931241	100932241	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	7799.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	128.14	163.58	95.27	124.15	85.84	66.71	155.26	187.92	102.42
Merged-chr10-61204158-3	chr10	61203674	61204674	+	902.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 18 of 21)	intron (NM_001081127, intron 18 of 21)	28912.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	13.16	6.91	5.55	4.05	3.27	0.0	5.28	8.4	1.87
Merged-chr13-45392198-3	chr13	45391708	45392708	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	2466.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	194.5	160.35	88.8	203.76	139.49	133.43	215.46	223.29	106.79
Merged-chr9-59734039-3	chr9	59733544	59734544	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001172071)	TTS (NM_001172071)	16605.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	232.83	240.99	135.04	276.63	282.24	245.16	252.43	367.44	116.79
Merged-chr15-78899809-3	chr15	78899315	78900315	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	47.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	92.1	90.31	106.37	73.54	58.31	98.87	87.66	99.49	71.82
Merged-chr11-118220867-3	chr11	118220359	118221359	+	902.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-8117.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	50.34	64.05	57.35	78.94	56.45	58.68	91.89	73.84	39.97
Merged-chr12-25301181-3	chr12	25300683	25301683	+	902.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172009.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.15	8.75	5.55	5.4	7.46	9.65	23.24	11.94	12.49
Merged-chr9-83570081-1	chr9	83569581	83570581	+	902.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	21743.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	2.86	1.38	4.62	3.37	1.4	1.61	5.28	3.54	4.37
Merged-chr4-139330756-3	chr4	139330259	139331259	+	902.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20015.0	NM_025337	110198.0	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	2.86	2.76	9.25	1.35	1.4	0.8	6.34	1.33	3.75
Merged-chr2-31259135-2	chr2	31258644	31259644	+	902.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	13221.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.0	3.23	6.47	4.72	14.93	12.86	8.45	6.19	2.5
Merged-chr18-34863483-9	chr18	34862928	34863928	+	902.148132	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007913, exon 2 of 2)	exon (NM_007913, exon 2 of 2)	2221.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.0	4.15	2.77	2.02	0.93	3.22	3.17	0.0	1.87
Merged-chr5-115347768-3	chr5	115347262	115348262	+	902.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007748, intron 2 of 2)	intron (NM_007748, intron 2 of 2)	1193.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	15.45	27.65	37.0	24.29	14.93	21.7	19.01	31.84	19.98
Merged-chr1-92956833-3	chr1	92956306	92957306	+	902.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-6216.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	2.29	5.07	5.55	11.47	6.53	4.82	9.51	3.54	2.5
Merged-chr2-19629063-3	chr2	19628554	19629554	+	902.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28843.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	91.53	108.75	61.05	93.11	63.45	43.4	83.44	145.92	77.44
Merged-chr11-95825072-3	chr11	95824566	95825566	+	902.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	566.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	54.92	45.16	57.35	52.63	36.39	40.19	43.3	42.01	58.71
Merged-chr5-139382932-3	chr5	139382393	139383393	+	902.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	2254.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	104.11	110.13	96.2	155.19	160.01	147.09	111.96	134.86	64.95
Merged-chr2-129514485-3	chr2	129513927	129514927	+	902.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	22175.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	138.44	126.72	77.7	136.29	117.09	91.63	121.46	110.98	73.07
Merged-chr7-130900450-3	chr7	130899939	130900939	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 4 of 9)	intron (NM_133942, intron 4 of 9)	-7829.0	NR_106028	102466219.0		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	39.47	45.62	22.2	52.63	47.58	34.56	31.69	37.14	17.49
Merged-chr15-64002117-3	chr15	64001627	64002627	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-4061.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	30.32	13.36	23.12	18.89	27.99	17.68	24.29	14.59	14.36
Merged-chr3-52269040-3	chr3	52268518	52269518	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019739, exon 1 of 3)	exon (NM_019739, exon 1 of 3)	681.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	126.42	90.31	99.89	102.56	68.58	72.34	124.63	76.94	65.58
Merged-chr10-10554416-3	chr10	10553902	10554902	+	902.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026405, intron 1 of 2)	intron (NM_026405, intron 1 of 2)	3805.0	NM_026405	67844.0	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	53.77	64.51	33.3	85.69	66.71	42.6	110.9	80.92	46.22
Merged-chr14-26534104-4	chr14	26533674	26534674	+	902.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347494, exon 1 of 20)	5' UTR (NM_001347494, exon 1 of 20)	450.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	133.29	141.46	142.44	134.94	167.48	105.3	162.65	110.98	92.43
Merged-chr1-91235600-3	chr1	91235102	91236102	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-14702.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.72	5.99	3.7	5.4	6.06	7.23	7.39	5.31	2.5
Merged-chr2-35174249-1	chr2	35173749	35174749	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 39 of 43)	MTD|LTR|ERVL-MaLR	26871.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	40.04	37.78	30.52	43.86	35.45	57.07	46.47	50.41	20.61
Merged-chr2-118307818-3	chr2	118307312	118308312	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045919, intron 2 of 2)	intron (NR_045919, intron 2 of 2)	2898.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	8.58	6.45	6.47	5.4	5.6	7.23	7.39	5.75	5.0
Merged-chr19-7922561-1	chr19	7922061	7923061	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134256, intron 3 of 10)	L1_Mus2|LINE|L1	43466.0	NM_134256	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	1.14	2.3	1.85	1.35	3.73	4.82	4.22	0.88	5.62
Merged-chr14-93701694-1	chr14	93701194	93702194	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	188975.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.0	1.84	3.7	6.75	6.53	9.65	38.02	17.24	21.23
Merged-chr5-20702115-5	chr5	20701677	20702677	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	179947.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	6.86	8.29	20.35	19.57	13.06	16.88	28.52	16.36	4.37
Merged-chr2-168590323-2	chr2	168589802	168590802	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136073)	promoter-TSS (NM_001136073)	63.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	16.02	17.51	11.1	17.54	16.33	7.23	3.17	3.98	5.0
Merged-chr3-51710752-1	chr3	51710252	51711252	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	49573.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	34.32	38.25	37.0	24.96	16.33	28.94	12.67	16.36	7.49
Merged-chr10-99169176-3	chr10	99168683	99169683	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	61048.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	209.94	219.33	101.74	193.64	152.08	116.55	193.28	163.16	93.68
Merged-chr3-149445403-1	chr3	149444903	149445903	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	170666.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	5.72	4.61	5.55	3.37	6.06	7.23	2.11	3.98	5.0
Merged-chr7-100254836-1	chr7	100254336	100255336	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027629, intron 4 of 13)	intron (NM_027629, intron 4 of 13)	-9708.0	NR_033563	14777.0	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	9.72	7.37	8.32	5.4	7.46	8.04	6.34	5.75	6.25
Merged-chr17-50876630-2	chr17	50876117	50877117	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	177936.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	10.3	7.83	3.7	7.42	6.06	6.43	3.17	7.07	5.0
Merged-chr4-105640979-1	chr4	105640479	105641479	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	483632.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.44	5.99	14.8	12.82	11.66	20.9	4.22	5.31	3.75
Merged-chr6-134135088-3	chr6	134134600	134135600	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	99400.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	14.87	10.14	9.25	8.1	7.93	6.43	10.56	9.29	7.49
Merged-chr14-75010525-1	chr14	75010025	75011025	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-5502.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	22.31	33.64	37.92	41.83	47.12	40.99	28.52	48.2	32.48
Merged-chr18-69280537-1	chr18	69280037	69281037	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63955.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.58	3.23	0.92	2.02	3.27	4.02	2.11	1.77	5.0
Merged-chr19-10905475-3	chr19	10904981	10905981	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253844, exon 14 of 14)	3' UTR (NM_001253844, exon 14 of 14)	6836.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	39.47	41.01	57.35	44.53	30.32	33.76	41.19	36.7	16.24
Merged-chr1-135660301-1	chr1	135659801	135660801	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59762.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	4.58	3.23	5.55	133.59	115.69	99.67	39.08	26.09	19.98
Merged-chr16-62834134-2	chr16	62833636	62834636	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 1 of 9)	L2a|LINE|L2	12904.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	2.86	5.07	4.62	4.72	1.87	4.82	4.22	0.88	0.0
Merged-chr11-43369390-1	chr11	43368890	43369890	+	902.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	5071.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	95.53	135.01	81.4	106.61	54.58	104.49	86.61	74.28	75.57
Merged-chr1-185248866-1	chr1	185248366	185249366	+	902.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163754, intron 12 of 34)	intron (NM_001163754, intron 12 of 34)	5891.0	NR_035529	100316737.0		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	13.73	31.33	18.5	17.54	36.85	16.88	2.11	0.0	0.62
Merged-chr14-25607863-2	chr14	25607361	25608361	+	902.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	4348.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	28.03	23.04	30.52	33.06	19.13	29.74	41.19	12.82	1.25
Merged-chr3-8595612-3	chr3	8595077	8596077	+	901.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32474.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	17.16	12.44	2.77	13.49	10.73	13.66	5.28	7.07	9.99
Merged-chrX-151508789-3	chrX	151508296	151509296	+	901.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-11876.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	4.0	2.76	5.55	8.1	1.4	1.61	1.06	3.1	1.87
Merged-chr5-134228285-2	chr5	134227795	134228795	+	901.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010876, intron 1 of 10)	intron (NM_010876, intron 1 of 10)	1330.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	61.21	62.21	66.6	77.59	62.05	72.34	121.46	77.38	38.72
Merged-chr7-105751651-3	chr7	105751154	105752154	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009906, exon 3 of 13)	exon (NM_009906, exon 3 of 13)	581.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	221.38	240.99	168.34	253.02	341.02	168.8	261.93	268.4	119.91
Merged-chr19-48049508-3	chr19	48049001	48050001	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111789.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	2.86	6.91	7.4	6.75	3.73	12.86	5.28	10.17	7.49
Merged-chr2-170311148-3	chr2	170310639	170311639	+	901.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45222.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	10.3	14.28	11.1	19.57	12.6	9.65	20.07	8.4	4.37
Merged-chr4-150593996-3	chr4	150593504	150594504	+	901.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	58170.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	143.59	174.18	85.1	107.95	121.76	71.54	186.94	219.76	63.08
Merged-chr9-67845972-2	chr9	67845518	67846518	+	901.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	5622.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	22.88	37.78	22.2	30.36	28.46	35.37	14.79	12.38	22.48
Merged-chr17-57283972-2	chr17	57283464	57284464	+	901.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	intron (NM_001163816, intron 1 of 25)	4864.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	57.21	60.36	33.3	54.65	26.12	77.97	69.71	83.13	64.33
Merged-chr9-40583738-2	chr9	40583227	40584227	+	901.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52344.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	9.72	11.98	17.57	6.75	4.2	15.27	4.22	8.84	13.74
Merged-chr4-135973819-3	chr4	135973303	135974303	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1209.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	72.08	63.59	33.3	95.81	104.5	81.18	82.38	90.64	46.84
Merged-chr17-34150252-1	chr17	34149752	34150752	+	901.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010388, intron 3 of 5)	intron (NM_010388, intron 3 of 5)	-2939.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	1.72	2.3	7.4	6.07	3.73	4.82	2.11	3.98	2.5
Merged-chr14-33240599-3	chr14	33240104	33241104	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	23781.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	29.17	36.86	35.15	39.81	36.39	55.46	25.35	25.65	44.34
Merged-chr6-72522532-3	chr6	72522032	72523032	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21859.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	2.86	5.99	5.55	8.1	7.0	6.43	16.9	14.59	7.49
Merged-chr6-113047591-3	chr6	113047077	113048077	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355266, exon 2 of 10)	exon (NM_001355266, exon 2 of 10)	1275.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	104.11	113.81	89.72	92.44	70.91	88.42	120.41	163.6	87.43
Merged-chr18-38233549-3	chr18	38233036	38234036	+	901.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16662.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	19.45	23.04	8.32	24.29	20.06	24.92	41.19	28.3	33.1
Merged-chr16-27376761-3	chr16	27376252	27377252	+	901.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6513.0	NM_198166	224065.0	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	9.72	17.97	21.27	15.52	17.26	10.45	17.96	16.8	8.74
Merged-chr19-3986520-3	chr19	3986037	3987037	+	901.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302482)	promoter-TSS (NM_001302482)	-33.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	19.45	5.07	20.35	13.49	17.73	14.47	5.28	3.98	6.25
Merged-chr4-109406577-6	chr4	109406243	109407243	+	901.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153392)	promoter-TSS (NM_153392)	-357.0	NM_153392	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	16.59	3.23	8.32	33.74	23.79	16.08	5.28	3.98	1.25
Merged-chr4-3775094-3	chr4	3774613	3775613	+	901.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	60149.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	48.62	46.54	38.85	33.06	28.46	45.01	31.69	43.77	48.71
Merged-chr8-71406848-3	chr8	71406352	71407352	+	901.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310502, intron 3 of 8)	intron (NM_001310502, intron 3 of 8)	840.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	15.45	2.76	4.62	4.72	4.2	5.63	3.17	5.75	7.49
Merged-chr3-15332328-2	chr3	15331828	15332828	+	901.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001076679)	promoter-TSS (NM_001076679)	-26.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	11.44	17.97	13.87	18.22	22.39	28.94	12.67	13.27	12.49
Merged-chr3-122122269-3	chr3	122121781	122122781	+	901.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	77821.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	6.86	4.15	1.85	7.42	4.67	2.41	4.22	0.44	0.0
Merged-chr1-125471486-3	chr1	125470974	125471974	+	901.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35747.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	67.5	76.95	47.17	45.88	62.51	66.71	66.54	85.78	46.22
Merged-chr5-135571491-2	chr5	135571096	135572096	+	901.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356630, intron 2 of 3)	(CA)n|Simple_repeat|Simple_repeat	1453.0	NM_019577	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	62.35	58.98	37.92	145.74	91.9	147.09	81.33	75.17	27.48
Merged-chr2-13561397-3	chr2	13560892	13561892	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12919.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	26.89	16.13	17.57	15.52	14.0	12.06	14.79	11.94	14.36
Merged-chr6-97398558-3	chr6	97398065	97399065	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	60721.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	48.05	70.04	66.6	77.59	64.38	67.52	115.12	81.36	53.08
Merged-chr2-181278033-3	chr2	181277531	181278531	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198169, exon 2 of 10)	exon (NM_198169, exon 2 of 10)	9935.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	8.01	12.44	12.02	19.57	18.66	28.94	39.08	38.47	31.23
Merged-chrX-98964705-3	chrX	98964209	98965209	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	26928.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	4.58	5.53	0.0	2.7	1.4	1.61	6.34	0.44	0.0
Merged-chr6-82751173-3	chr6	82750675	82751675	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	23279.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	21.17	16.59	3.7	33.74	21.46	17.68	35.91	16.8	11.24
Merged-chr4-140952429-3	chr4	140951921	140952921	+	901.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008812, exon 16 of 16)	3' UTR (NM_008812, exon 16 of 16)	5481.0	NR_045911	100126227.0	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	-	predicted gene 13031	ncRNA	33.18	30.41	22.2	26.31	17.73	28.94	42.25	32.72	18.74
Merged-chr7-46059161-2	chr7	46058647	46059647	+	901.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153057, intron 15 of 30)	intron (NM_153057, intron 15 of 30)	25451.0	NM_153057	211548.0	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	16.02	17.05	35.15	10.12	14.0	23.31	23.24	19.46	19.98
Merged-chr18-62186233-2	chr18	62185729	62186729	+	901.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6129.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	106.97	99.99	55.5	92.44	76.51	66.71	97.17	66.33	69.32
Merged-chr1-52655354-2	chr1	52654863	52655863	+	901.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133829)	TTS (NM_133829)	24658.0	NM_001142647	227094.0	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	5.15	4.15	8.32	6.75	3.27	9.65	4.22	0.88	2.5
Merged-chr13-102895032-3	chr13	102894529	102895529	+	901.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	134774.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	50.91	33.64	18.5	37.78	35.45	24.11	25.35	31.84	23.73
Merged-chr12-88472141-2	chr12	88471637	88472637	+	901.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-94814.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	7.44	1.84	7.4	12.82	15.39	18.49	14.79	16.8	13.74
Merged-chr7-19467772-2	chr7	19467276	19468276	+	901.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-9282.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	58.92	42.85	29.6	52.63	32.19	72.34	123.57	110.54	92.43
Merged-chr12-87488917-3	chr12	87488440	87489440	+	901.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-16641.0	NM_025507	66354.0	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	4.58	0.92	4.62	4.05	1.87	3.22	6.34	1.77	3.75
Merged-chr1-64324205-2	chr1	64323708	64324708	+	901.5750119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202819.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	13.16	17.97	3.7	9.45	17.26	20.09	7.39	3.54	6.25
Merged-chr2-122629211-3	chr2	122628711	122629711	+	901.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_001033256	214616.0	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	9.15	7.37	5.55	8.77	4.2	8.84	13.73	7.07	7.49
Merged-chr2-6479152-3	chr2	6478636	6479636	+	901.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126400.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	98.39	71.88	38.85	153.16	166.08	135.84	90.83	80.47	79.32
Merged-chr6-100670545-3	chr6	100669953	100670953	+	901.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181590, intron 1 of 10)	intron (NM_181590, intron 1 of 10)	704.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	78.37	69.58	52.72	104.58	102.63	56.27	73.93	67.65	44.34
Merged-chr16-36753298-1	chr16	36752798	36753798	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021301, intron 19 of 21)	intron (NM_021301, intron 19 of 21)	31664.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	34.9	41.47	45.32	41.16	41.99	36.97	45.42	33.6	43.09
Merged-chr4-19682705-2	chr4	19682200	19683200	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	26304.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	30.32	28.11	24.05	53.98	38.25	30.54	32.74	42.01	13.74
Merged-chr1-78659207-1	chr1	78658707	78659707	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136226, intron 1 of 3)	intron (NM_001136226, intron 1 of 3)	767.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	21.17	3.69	4.62	16.19	11.2	6.43	10.56	7.07	7.49
Merged-chr3-103915014-3	chr3	103914633	103915633	+	901.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356556, exon 1 of 8)	exon (NM_001356556, exon 1 of 8)	1013.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	169.9	281.54	224.76	168.0	201.53	154.33	190.11	200.3	160.5
Merged-chr14-61676114-3	chr14	61675600	61676600	+	901.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	6273.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	23.45	26.26	37.0	14.17	15.86	25.72	39.08	22.99	34.35
Merged-chr7-7132970-1	chr7	7132470	7133470	+	901.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029584, exon 4 of 4)	exon (NM_029584, exon 4 of 4)	3785.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	17.16	22.12	25.9	22.94	12.13	20.9	11.62	3.54	8.74
Merged-chr6-136463654-3	chr6	136463164	136464164	+	901.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-48095.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	104.69	99.99	77.7	102.56	95.63	91.63	113.01	106.56	56.83
Merged-chr11-117358422-3	chr11	117357893	117358893	+	901.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017380, intron 8 of 9)	intron (NM_017380, intron 8 of 9)	26080.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	13.73	5.99	8.32	2.7	2.8	7.23	4.22	3.1	2.5
Merged-chr10-17527563-1	chr10	17527063	17528063	+	901.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-195665.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.0	3.23	1.85	4.72	4.2	1.61	3.17	2.21	5.62
Merged-chr15-61986157-3	chr15	61985651	61986651	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	810.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	112.12	141.46	106.37	134.94	137.15	140.66	148.92	152.55	104.92
Merged-chr13-44722208-3	chr13	44721724	44722724	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8550.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.0	8.75	15.72	4.72	10.73	7.23	8.45	9.29	7.49
Merged-chr5-32192259-3	chr5	32191750	32192750	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40458.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	3.43	4.15	4.62	4.72	4.2	4.02	9.51	2.21	5.62
Merged-chr16-18858749-3	chr16	18858257	18859257	+	901.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17880.0	NM_010922	18100.0	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	5.15	3.69	2.77	6.07	1.87	5.63	4.22	0.88	1.25
Merged-chr9-64340675-3	chr9	64340172	64341172	+	901.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172519)	promoter-TSS (NM_172519)	101.0	NM_001177784	213550.0	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	157.89	186.62	164.64	145.74	168.41	151.11	132.02	114.08	104.92
Merged-chr1-55029590-3	chr1	55029084	55030084	+	901.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2106.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	157.89	143.3	110.99	173.4	145.08	148.7	162.65	146.36	103.67
Merged-chr2-144258058-2	chr2	144257559	144258559	+	901.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024225, intron 4 of 12)	intron (NM_024225, intron 4 of 12)	8143.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	26.31	23.04	39.77	14.17	10.26	12.86	17.96	14.15	7.49
Merged-chr2-12318944-1	chr2	12318444	12319444	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17000.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	8.58	5.07	3.7	9.45	5.13	13.66	7.39	5.31	3.75
Merged-chr1-121508531-3	chr1	121508026	121509026	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19939.0	NM_010483	15564.0	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	61.21	68.66	39.77	18.89	16.79	36.97	73.93	68.54	44.97
Merged-chr12-26464580-3	chr12	26464074	26465074	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4641.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	12.59	17.51	8.32	12.14	3.73	17.68	7.39	14.15	8.74
Merged-chr5-74794958-1	chr5	74794458	74795458	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	-92055.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	4.0	3.23	0.0	14.17	3.73	7.23	3.17	1.77	5.0
Merged-chr18-11202488-1	chr18	11201988	11202988	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-149921.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	4.0	3.23	1.85	4.05	3.73	3.22	4.22	1.77	5.0
Merged-chr2-26133194-4	chr2	26132698	26133698	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6345.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	58.35	62.67	64.75	47.9	56.91	79.58	97.17	72.96	68.7
Merged-chr3-35909161-1	chr3	35908661	35909661	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033623, intron 4 of 6)	intron (NM_033623, intron 4 of 6)	20913.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	9.15	12.44	7.4	7.42	7.46	11.25	9.51	6.19	5.62
Merged-chr3-88380236-1	chr3	88379736	88380736	+	901.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_001032298	12097.0	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	18.31	6.91	3.7	9.45	8.86	4.02	21.12	8.4	1.87
Merged-chr17-20944356-3	chr17	20943858	20944858	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-1096.0	NM_016891	51792.0	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	44.05	32.72	21.27	53.98	39.19	26.53	55.98	34.05	18.74
Merged-chr7-4532546-3	chr7	4532036	4533036	+	901.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033548)	promoter-TSS (NM_001033548)	-94.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	6.29	1.38	1.85	7.42	1.4	1.61	4.22	2.65	5.0
Merged-chr6-89361934-3	chr6	89361506	89362506	+	901.295227	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 1 of 31)	CpG	607.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	61.78	37.32	37.92	57.35	18.66	33.76	65.48	17.24	16.24
Merged-chr10-57463521-3	chr10	57463002	57464002	+	901.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22851.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	1.72	2.3	3.7	4.05	1.87	4.02	0.0	2.65	1.25
Merged-chr7-122955818-3	chr7	122955320	122956320	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	14639.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	4.0	1.84	0.0	4.05	7.93	5.63	5.28	1.33	3.12
Merged-chr13-102144014-3	chr13	102143520	102144520	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-375803.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	10.3	6.91	7.4	8.1	5.6	1.61	9.51	13.27	9.99
Merged-chr1-33873776-3	chr1	33873355	33874355	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 3 of 6)	B2_Mm2|SINE|B2	33766.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	18.88	20.27	13.87	13.49	14.93	9.65	15.84	14.59	22.48
Merged-chr15-25940571-3	chr15	25940073	25941073	+	901.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-129.0	NM_001277315	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	8.58	4.15	3.7	6.07	4.2	2.41	7.39	3.1	9.37
Merged-chr10-121476913-2	chr10	121476413	121477413	+	901.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138956)	promoter-TSS (NM_138956)	-663.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	102.97	108.28	120.24	99.18	86.77	129.41	47.53	54.39	28.1
Merged-chr7-107620330-2	chr7	107619814	107620814	+	901.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	intron (NM_001163557, intron 1 of 25)	13470.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	12.59	11.52	9.25	12.82	7.46	7.23	5.28	4.86	9.99
Merged-chr8-73242249-3	chr8	73241736	73242736	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	111304.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	9.15	13.82	10.17	5.4	7.46	12.86	7.39	11.94	13.74
Merged-chr19-55217810-3	chr19	55217295	55218295	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 12 of 20)	intron (NM_001081076, intron 12 of 20)	23441.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	16.02	10.14	5.55	17.54	12.13	13.66	26.4	26.97	18.11
Merged-chr8-84831675-3	chr8	84831170	84832170	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183358)	promoter-TSS (NM_183358)	595.0	NR_033145	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	46.34	59.44	45.32	56.68	49.92	48.23	100.34	89.76	46.84
Merged-chr5-148995233-3	chr5	148994644	148995644	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102383)	promoter-TSS (NR_102383)	70.0	NR_102383	319982.0	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	17.16	11.06	3.7	17.54	24.26	21.7	14.79	14.59	8.74
Merged-chr17-88435523-3	chr17	88435062	88436062	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5142.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	42.33	36.4	40.7	91.09	55.98	65.91	44.36	55.27	30.6
Merged-chr9-83562472-3	chr9	83561979	83562979	+	901.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	14141.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	45.76	71.88	57.35	51.95	34.52	65.91	90.83	99.93	55.58
Merged-chr11-69063604-3	chr11	69063121	69064121	+	901.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3846.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	117.27	102.29	48.1	101.21	55.98	83.59	95.06	100.37	79.94
Merged-chr19-3562909-3	chr19	3562390	3563390	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360430, intron 1 of 22)	L1M5|LINE|L1	12859.0	NM_001360430	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	41.76	42.85	44.4	22.94	21.93	52.25	21.12	20.78	19.98
Merged-chr7-139978724-3	chr7	139978184	139979184	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	71.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	6.29	6.91	5.55	10.12	10.26	16.08	7.39	5.31	5.0
Merged-chr17-10318827-3	chr17	10318332	10319332	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159517, exon 1 of 8)	exon (NM_001159517, exon 1 of 8)	529.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	116.13	141.46	201.64	126.85	100.77	117.35	161.6	103.02	93.68
Merged-chr4-137175768-3	chr4	137175283	137176283	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-10717.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	10.87	7.83	7.4	8.1	3.27	3.22	17.96	3.54	1.25
Merged-chr1-128548381-1	chr1	128547881	128548881	+	901.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43918.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	3.43	3.69	5.55	4.72	1.87	1.61	20.07	7.52	9.99
Merged-chr11-6165348-3	chr11	6164845	6165845	+	901.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	L1MC|LINE|L1	7986.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	13.73	9.22	24.97	10.8	3.27	4.82	23.24	7.07	9.99
Merged-chr4-102944518-2	chr4	102944008	102945008	+	901.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-41871.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	2.86	2.3	5.55	5.4	2.8	3.22	4.22	3.98	3.75
Merged-chr11-70849426-3	chr11	70848964	70849964	+	901.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	B2_Mm1a|SINE|B2	4703.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	37.18	47.0	21.27	41.83	27.52	31.35	22.18	43.77	31.23
Merged-chr1-177236929-3	chr1	177236422	177237422	+	901.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	B3|SINE|B2	11845.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	12.59	8.75	12.95	14.17	7.46	1.61	7.39	3.1	2.5
Merged-chr7-115149123-2	chr7	115148624	115149624	+	901.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	197850.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.15	5.53	20.35	7.42	4.2	4.02	6.34	3.54	15.61
Merged-chr10-122534929-3	chr10	122534412	122535412	+	901.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34979.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	74.37	84.78	32.37	89.06	123.16	92.44	108.79	158.74	47.46
Merged-chr10-44002705-3	chr10	44002211	44003211	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 1 of 19)	intron (NM_172393, intron 1 of 19)	2135.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	49.77	47.92	31.45	24.29	27.06	32.96	39.08	43.77	32.48
Merged-chr7-68070760-3	chr7	68070245	68071245	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	L1MD|LINE|L1	118488.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	10.3	14.75	3.7	14.17	16.33	12.86	8.45	3.98	11.24
Merged-chr2-124775866-3	chr2	124775246	124776246	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122165.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.58	10.6	5.55	18.22	12.6	12.86	13.73	14.15	16.24
Merged-chr5-112282884-3	chr5	112282378	112283378	+	901.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	6187.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	68.65	82.02	74.92	92.44	75.11	73.95	91.89	57.04	64.33
Merged-chr19-4283863-3	chr19	4283375	4284375	+	901.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026720)	promoter-TSS (NM_026720)	-738.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	41.19	40.09	37.92	46.56	20.53	39.39	47.53	30.51	39.35
Merged-chr16-49957112-3	chr16	49956600	49957600	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153658, intron 1 of 1)	intron (NR_153658, intron 1 of 1)	1270.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	10.87	12.9	5.55	15.52	12.13	19.29	19.01	11.5	7.49
Merged-chr7-81843173-3	chr7	81842676	81843676	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13745.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	30.89	21.2	19.42	20.92	10.26	20.9	29.57	33.16	11.87
Merged-chr1-191458461-3	chr1	191457963	191458963	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	B3|SINE|B2	6585.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	12.01	6.91	3.7	13.49	10.26	8.04	10.56	5.75	3.75
Merged-chr12-69790719-3	chr12	69790222	69791222	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-15.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	4.0	2.76	8.32	4.72	3.27	4.82	6.34	4.42	2.5
Merged-chr4-123663011-3	chr4	123662509	123663509	+	901.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-2872.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	81.8	71.42	80.47	77.59	45.25	68.32	98.23	69.86	49.34
Merged-chr10-57743849-3	chr10	57743323	57744323	+	901.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41100.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	29.17	45.62	24.05	34.41	27.52	52.25	41.19	36.7	41.84
Merged-chr7-92725597-1	chr7	92725097	92726097	+	901.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15862.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.57	1.84	5.55	1.35	0.93	5.63	3.17	1.33	7.49
Merged-chr18-23874771-3	chr18	23874270	23875270	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	70800.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	26.31	26.73	21.27	146.41	79.77	46.62	99.28	99.93	49.34
Merged-chr13-66933799-1	chr13	66933299	66934299	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025547)	promoter-TSS (NM_025547)	-727.0	NM_025547	66410.0	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	47.48	47.46	37.0	63.42	53.18	68.32	42.25	42.01	23.11
Merged-chr15-29824371-1	chr15	29823871	29824871	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110967.0	NR_039542	100628607.0		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	3.43	7.37	3.7	5.4	7.93	8.04	3.17	5.31	1.25
Merged-chr10-23865132-1	chr10	23864632	23865632	+	901.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 4 of 6)	intron (NM_011979, intron 4 of 6)	13670.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	2.29	5.99	3.7	1.35	4.2	0.0	3.17	0.44	2.5
Merged-chr2-91112691-1	chr2	91112191	91113191	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	-5453.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	24.6	15.21	31.45	35.09	35.92	24.11	29.57	28.74	12.49
Merged-chr19-24703850-1	chr19	24703350	24704350	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175013, intron 10 of 10)	L3b|LINE|CR1	29842.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	2.29	3.69	0.0	0.67	7.0	3.22	3.17	0.44	2.5
Merged-chr11-115135060-2	chr11	115134540	115135540	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-1048.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	59.49	49.3	42.55	49.25	37.32	43.4	46.47	40.24	39.35
Merged-chr15-31454701-1	chr15	31454201	31455201	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	23.45	14.28	19.42	17.54	17.26	27.33	30.63	14.59	30.6
Merged-chr15-34357919-1	chr15	34357419	34358419	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256161)	promoter-TSS (NM_001256161)	-47.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	10.87	10.6	13.87	5.4	4.67	8.84	4.22	3.1	1.87
Merged-chr11-90492771-3	chr11	90492264	90493264	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101847.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	46.34	22.58	24.05	20.24	14.0	12.86	17.96	31.84	5.0
Merged-chr12-84614753-2	chr12	84614253	84615253	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	2713.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	57.21	69.58	58.27	147.76	165.61	155.93	118.29	132.65	49.96
Merged-chr9-65454536-1	chr9	65454036	65455036	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6401.0	NM_138584	27965.0	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	SPG21, maspardin	protein-coding	25.17	15.67	20.35	12.14	3.27	8.04	19.01	21.67	3.75
Merged-chr1-64052553-1	chr1	64052053	64053053	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-10052.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	37.76	45.62	14.8	41.83	34.52	15.27	31.69	17.69	24.98
Merged-chr11-77980870-2	chr11	77980383	77981383	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1933.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	29.75	25.34	22.2	26.31	25.19	24.11	22.18	24.76	18.74
Merged-chr2-167631280-2	chr2	167630864	167631864	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311131, intron 1 of 4)	CpG	641.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	179.62	111.05	109.14	121.45	100.3	142.27	123.57	86.22	89.93
Merged-chr3-41444530-2	chr3	41444044	41445044	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48655.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	8.01	3.69	0.92	5.4	1.87	3.22	4.22	3.98	1.25
Merged-chr19-53453913-1	chr19	53453413	53454413	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	10883.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	32.04	17.05	13.87	51.28	31.26	29.74	5.28	2.21	0.0
Merged-chr11-77410075-3	chr11	77409566	77410566	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-53847.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	33.75	29.03	35.15	30.36	19.59	43.4	29.57	34.49	31.23
Merged-chr1-6204919-1	chr1	6204419	6205419	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9743.0	NM_009826	12421.0	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	9.15	7.37	10.17	7.42	6.53	9.65	8.45	7.07	5.0
Merged-chr10-66813054-1	chr10	66812554	66813554	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	107330.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	8.01	6.45	2.77	6.75	3.27	3.22	10.56	3.1	5.62
Merged-chr3-118071562-3	chr3	118071047	118072047	+	901.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-202611.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	5.15	10.14	5.55	11.47	15.86	4.82	7.39	10.17	3.75
Merged-chr15-62108312-1	chr15	62107812	62108812	+	901.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	69055.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	9.15	7.83	3.7	14.84	7.46	7.23	11.62	6.19	12.49
Merged-chr11-34776177-3	chr11	34775673	34776673	+	900.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	7732.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	21.17	23.04	6.47	26.31	18.19	10.45	24.29	11.94	31.85
Merged-chr19-3414495-3	chr19	3414013	3415013	+	900.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329667)	promoter-TSS (NM_001329667)	31.0	NM_001329667	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	4.0	1.38	3.7	12.82	2.33	8.04	8.45	3.1	4.37
Merged-chr6-124542612-3	chr6	124542112	124543112	+	900.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097617)	promoter-TSS (NM_001097617)	-253.0	NM_001097617	50908.0	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	5.72	4.15	1.85	1.35	1.4	0.0	5.28	2.21	1.87
Merged-chr11-110448662-4	chr11	110448211	110449211	+	900.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-29804.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	56.06	49.3	39.77	53.3	35.45	33.76	90.83	63.23	48.09
Merged-chr10-80985766-3	chr10	80985248	80986248	+	900.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	CpG	15617.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	56.06	39.63	28.67	37.78	33.59	20.9	40.14	26.97	8.74
Merged-chr12-34195660-3	chr12	34195157	34196157	+	900.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 23 of 27)	MusHAL1|LINE|L1	237986.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.0	9.68	12.95	2.7	8.4	11.25	5.28	4.42	3.75
Merged-chr5-24876736-3	chr5	24876278	24877278	+	900.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145401, intron 9 of 15)	intron (NM_145401, intron 9 of 15)	-25791.0	NR_040684	71161.0	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	2.86	5.53	9.25	11.47	7.46	16.88	4.22	2.65	11.24
Merged-chr19-11118696-3	chr19	11118175	11119175	+	900.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	intron (NM_027058, intron 1 of 6)	12203.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	76.66	84.78	54.57	82.32	89.1	72.34	36.97	36.7	34.35
Merged-chr2-133552885-3	chr2	133552391	133553391	+	900.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007553, exon 1 of 3)	5' UTR (NM_007553, exon 1 of 3)	732.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	20.02	7.37	5.55	41.16	20.99	31.35	16.9	9.73	3.75
Merged-chr13-105227172-3	chr13	105226670	105227670	+	900.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	Lx9|LINE|L1	65844.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	12.01	9.22	9.25	14.17	6.53	16.88	9.51	7.07	11.24
Merged-chr5-125406657-3	chr5	125406157	125407157	+	900.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16640.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	40.62	69.58	38.85	56.68	42.92	57.87	71.82	70.3	64.95
Merged-chr6-120159352-3	chr6	120158843	120159843	+	900.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-34480.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	37.76	57.14	61.97	53.3	52.72	49.83	39.08	27.86	45.59
Merged-chr7-106526818-2	chr7	106526387	106527387	+	900.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-85814.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	24.6	33.64	20.35	41.83	14.93	26.53	22.18	8.84	20.61
Merged-chr2-121855597-2	chr2	121855096	121856096	+	900.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11374.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	4.58	3.23	0.0	2.7	4.2	1.61	3.17	7.52	2.5
Merged-chr4-133613732-3	chr4	133613220	133614220	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 4 of 7)	intron (NM_001017968, intron 4 of 7)	-11552.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	87.52	70.5	56.42	178.13	135.29	107.71	28.52	13.27	8.74
Merged-chr3-146107625-3	chr3	146107126	146108126	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 1 of 22)	intron (NM_172864, intron 1 of 22)	410.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	35.47	23.04	7.4	14.84	16.79	12.06	4.22	14.59	6.25
Merged-chr3-108401912-3	chr3	108401382	108402382	+	900.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13612.0	NM_017392	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	5.15	0.92	3.7	2.02	0.93	1.61	2.11	0.88	7.49
Merged-chr10-87688012-2	chr10	87687519	87688519	+	900.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166224.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	3.43	2.76	0.0	10.12	2.33	1.61	8.45	7.96	7.49
Merged-chr3-116130978-4	chr3	116130492	116131492	+	900.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	38.9	25.8	14.8	51.95	37.32	47.42	20.07	29.63	18.74
Merged-chr9-123931138-3	chr9	123930560	123931560	+	900.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	37632.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	118.42	117.04	150.77	101.88	58.78	125.39	96.11	98.16	94.93
Merged-chr6-54160865-3	chr6	54160351	54161351	+	900.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-104007.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	14.3	6.91	5.55	16.19	9.8	21.7	1.06	3.54	6.25
Merged-chr5-65294413-3	chr5	65293906	65294906	+	900.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 8 of 24)	intron (NM_011258, intron 8 of 24)	41233.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	10.87	11.52	7.4	28.34	13.53	11.25	26.4	36.26	16.24
Merged-chr4-135885912-3	chr4	135885402	135886402	+	900.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9287.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	9.15	5.99	4.62	32.39	8.4	12.86	27.46	15.03	11.24
Merged-chr14-76171458-3	chr14	76170960	76171960	+	900.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60569.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	9.15	12.44	3.7	3.37	7.93	6.43	5.28	4.86	5.0
Merged-chr6-94509903-3	chr6	94509415	94510415	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	9601.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	60.07	86.17	69.37	64.77	101.23	99.67	42.25	38.91	22.48
Merged-chr14-75131662-3	chr14	75131146	75132146	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027581)	promoter-TSS (NM_027581)	523.0	NM_001247984	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	102.97	131.32	101.74	114.7	103.56	81.99	141.53	158.3	98.68
Merged-chr11-103246508-3	chr11	103246016	103247016	+	900.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	20885.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	54.92	43.31	44.4	54.65	25.19	44.21	42.25	28.74	35.6
Merged-chr8-24987635-4	chr8	24987148	24988148	+	900.71875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 11 of 21)	Lx4A|LINE|L1	29274.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	16.59	21.2	37.0	25.64	16.79	36.17	24.29	23.43	14.99
Merged-chr18-50030989-3	chr18	50030519	50031519	+	900.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	35.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	41.76	49.3	25.9	39.81	28.92	32.15	35.91	54.39	25.61
Merged-chr13-52985576-3	chr13	52985082	52986082	+	900.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4543.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	1.72	4.61	1.85	2.7	2.8	4.02	6.34	0.44	0.62
Merged-chr14-20928262-3	chr14	20927766	20928766	+	900.698425	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	21.74	18.43	5.55	37.78	24.72	26.53	15.84	17.24	15.61
Merged-chr1-74307653-3	chr1	74307151	74308151	+	900.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	B1_Mur2|SINE|Alu	-3315.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	30.89	28.11	5.55	45.21	27.06	36.97	25.35	40.24	13.12
Merged-chr6-116693766-3	chr6	116693255	116694255	+	900.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-19919.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	49.77	57.14	36.07	47.23	30.32	36.17	65.48	62.35	48.71
Merged-chr2-122610269-1	chr2	122609769	122610769	+	900.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025961, intron 1 of 8)	intron (NM_025961, intron 1 of 8)	1008.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	44.62	42.85	24.97	51.28	34.06	26.53	41.19	20.34	18.11
Merged-chr4-120914708-3	chr4	120914209	120915209	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10296.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	39.47	46.08	22.2	31.04	33.59	30.54	17.96	31.84	30.6
Merged-chr17-15743533-1	chr17	15743033	15744033	+	900.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007690, intron 17 of 35)	intron (NM_007690, intron 17 of 35)	38566.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	14.87	17.51	10.17	24.96	20.06	15.27	13.73	4.86	6.25
Merged-chr17-29164580-3	chr17	29164095	29165095	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360239, intron 16 of 21)	intron (NM_001360239, intron 16 of 21)	29539.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	8.01	5.99	0.0	24.29	20.53	8.84	3.17	1.77	3.75
Merged-chr2-32602848-3	chr2	32602351	32603351	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	3142.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	3.43	0.92	0.0	14.84	12.13	25.72	14.79	9.29	6.25
Merged-chr3-75277651-3	chr3	75277162	75278162	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7584.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	17.73	16.13	20.35	20.24	11.2	12.86	7.39	7.96	6.87
Merged-chr2-176708161-3	chr2	176707643	176708643	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	-210.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	11.44	7.37	11.1	18.22	22.86	15.27	10.56	9.73	5.62
Merged-chr16-91619008-3	chr16	91618535	91619535	+	900.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138664)	promoter-TSS (NM_138664)	-36.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	28.6	17.05	6.47	27.66	11.66	11.25	22.18	12.38	9.99
Merged-chr2-36214680-2	chr2	36214188	36215188	+	900.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15738.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	63.5	67.74	25.9	53.98	57.38	27.33	83.44	83.57	43.09
Merged-chr11-62470629-2	chr11	62470135	62471135	+	900.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039536, intron 1 of 6)	L1MB4|LINE|L1	12175.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	8.58	4.61	3.7	8.1	3.73	9.65	9.51	3.54	3.75
Merged-chr7-100661469-2	chr7	100660958	100661958	+	900.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163182, intron 2 of 7)	intron (NM_001163182, intron 2 of 7)	936.0	NM_013746	27276.0	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	2.29	0.92	0.92	6.07	2.8	1.61	4.22	2.21	1.25
Merged-chr10-117715364-3	chr10	117714880	117715880	+	900.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-4622.0	NM_001288586	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	45.76	32.72	22.2	45.88	34.06	51.44	69.71	73.4	54.33
Merged-chr13-113613567-3	chr13	113613082	113614082	+	900.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	4982.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	61.21	59.44	30.52	52.63	34.99	45.82	53.87	46.87	35.6
Merged-chr5-134676359-4	chr5	134675858	134676858	+	900.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010717, intron 2 of 15)	intron (NM_010717, intron 2 of 15)	1890.0	NM_001305875	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	37.18	29.95	13.87	29.01	15.86	25.72	15.84	10.17	13.74
Merged-chr4-44163297-2	chr4	44162797	44163797	+	900.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038993, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4241.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	12.59	3.69	5.55	6.07	4.67	4.02	8.45	9.29	4.37
Merged-chr14-44835284-3	chr14	44834781	44835781	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24094.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	8.01	10.14	7.4	8.77	12.6	16.08	1.06	3.98	5.0
Merged-chr18-30513320-3	chr18	30512815	30513815	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240450.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	50.91	58.06	33.3	20.24	13.06	16.08	36.97	44.66	23.11
Merged-chr3-103851080-3	chr3	103850555	103851555	+	900.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	intron (NM_001142960, intron 3 of 3)	-8740.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	44.62	43.31	27.75	31.04	14.0	15.27	33.8	26.97	17.49
Merged-chr7-80154906-3	chr7	80154390	80155390	+	900.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-31951.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	14.3	11.52	24.05	18.22	21.46	19.29	7.39	18.13	13.12
Merged-chr13-109685500-2	chr13	109684998	109685998	+	900.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-218311.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	24.03	15.67	11.1	9.45	11.2	12.86	8.45	12.82	5.0
Merged-chr5-96914778-2	chr5	96914277	96915277	+	900.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6495.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	21.74	21.66	20.35	23.62	13.06	36.97	5.28	3.98	11.87
Merged-chr11-117783287-3	chr11	117782768	117783768	+	900.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 2 of 16)	exon (NM_001195088, exon 2 of 16)	610.0	NM_001195088	217356.0	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	110.98	125.33	123.02	145.74	129.22	166.38	142.59	149.01	76.82
Merged-chr4-150136885-3	chr4	150136364	150137364	+	900.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019741, intron 7 of 13)	intron (NM_019741, intron 7 of 13)	-12108.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	3.43	3.23	1.85	4.05	3.27	1.61	3.17	1.77	10.62
Merged-chr15-81860996-3	chr15	81860487	81861487	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2661.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	96.68	97.69	76.77	87.71	92.84	120.57	108.79	103.02	119.28
Merged-chr1-154105011-3	chr1	154104518	154105518	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-96169.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	44.62	67.27	37.0	63.42	38.72	51.44	50.7	57.48	31.85
Merged-chr13-94702860-3	chr13	94702417	94703417	+	900.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-86026.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	12.59	8.29	12.95	20.24	18.66	13.66	24.29	11.5	9.99
Merged-chr13-97699135-3	chr13	97698629	97699629	+	900.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	48282.0	NR_152140	403201.0	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	21.74	20.27	30.52	17.54	14.46	23.31	25.35	27.41	21.23
Merged-chr11-5732896-3	chr11	5732414	5733414	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	8262.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	30.32	19.81	24.05	22.94	18.19	13.66	46.47	42.89	18.74
Merged-chr4-95341072-2	chr4	95340566	95341566	+	900.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216441.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.43	4.15	0.0	4.72	3.27	1.61	3.17	4.86	4.37
Merged-chrX-120207783-2	chrX	120207269	120208269	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-82558.0	NM_001271809	245578.0	Mm.39691	NM_001081385	ENSMUSG00000034755	Pcdh11x	PCDHX|PCDHX11|Pcdh11	protocadherin 11 X-linked	protein-coding	5.72	4.61	0.92	5.4	9.8	14.47	1.06	1.33	3.12
Merged-chr1-174049562-3	chr1	174049043	174050043	+	900.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146716)	promoter-TSS (NM_146716)	-832.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	7.44	4.15	3.7	14.17	6.06	15.27	9.51	6.19	8.12
Merged-chr2-163929734-3	chr2	163929231	163930231	+	900.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11048.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	87.52	87.55	91.57	136.29	94.23	95.65	78.16	53.94	33.1
Merged-chr11-62609231-3	chr11	62608731	62609731	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198861, exon 3 of 4)	exon (NM_198861, exon 3 of 4)	4701.0	NR_028541	100217444.0		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	16.59	12.44	4.62	9.45	9.8	24.11	10.56	13.27	14.36
Merged-chr1-106549238-3	chr1	106548740	106549740	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-2609.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	9.15	8.75	14.8	10.8	13.53	10.45	10.56	7.96	5.0
Merged-chr9-49485405-3	chr9	49484908	49485908	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	817.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	46.91	71.88	39.77	96.48	68.11	82.79	26.4	23.43	19.36
Merged-chr11-85843424-3	chr11	85842880	85843880	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10765.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	16.02	5.53	11.1	19.57	7.0	10.45	6.34	3.1	8.12
Merged-chr17-28692089-3	chr17	28691614	28692614	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357724)	promoter-TSS (NM_001357724)	-454.0	NM_001168513	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	118.99	112.43	126.72	130.22	112.9	125.39	110.9	126.9	81.19
Merged-chr1-151312688-3	chr1	151312194	151313194	+	900.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31792.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.0	7.83	5.55	27.66	11.2	16.08	19.01	14.59	14.99
Merged-chr1-152784364-3	chr1	152783869	152784869	+	900.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-15784.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	14.3	5.99	0.0	5.4	1.4	7.23	10.56	4.42	9.99
Merged-chr14-69853088-3	chr14	69852585	69853585	+	900.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	12678.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	6.86	4.61	0.0	7.42	1.4	3.22	4.22	2.65	1.25
Merged-chr3-69182567-3	chr3	69182083	69183083	+	900.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39836.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	18.31	11.52	7.4	54.65	24.26	19.29	9.51	7.96	5.62
Merged-chr11-53492225-3	chr11	53491742	53492742	+	900.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12047.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	21.74	19.81	8.32	39.81	38.72	40.19	12.67	22.55	9.99
Merged-chr16-36645891-3	chr16	36645386	36646386	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	20191.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	15.45	20.74	10.17	14.84	12.6	16.08	9.51	13.71	9.99
Merged-chr11-77816202-3	chr11	77815694	77816694	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291213, intron 2 of 40)	intron (NM_001291213, intron 2 of 40)	14896.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	10.87	6.45	1.85	14.84	6.06	8.04	11.62	7.96	1.87
Merged-chr3-137846757-3	chr3	137846252	137847252	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-17735.0	NM_001316995	51788.0	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	7.44	7.83	5.55	11.47	4.67	5.63	10.56	5.31	2.5
Merged-chr8-126665964-3	chr8	126665450	126666450	+	900.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72514.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	50.34	35.02	24.05	80.97	53.65	71.54	39.08	27.86	29.35
Merged-chr11-87762576-5	chr11	87762114	87763114	+	900.338074	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172449, intron 2 of 31)	intron (NM_172449, intron 2 of 31)	2073.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	6.86	2.3	1.85	3.37	0.47	4.82	2.11	0.0	2.5
Merged-chr11-79869986-2	chr11	79869480	79870480	+	900.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92407.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	92.67	84.32	44.4	179.47	113.36	116.55	139.42	143.26	58.08
Merged-chr4-34701715-2	chr4	34701207	34702207	+	900.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347062, intron 11 of 12)	ORR1E|LTR|ERVL-MaLR	-14269.0	NM_011895	24060.0	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	1.14	1.38	1.85	6.07	0.47	3.22	2.11	0.88	0.62
Merged-chr14-25393126-2	chr14	25392623	25393623	+	900.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-66062.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	13.73	12.44	15.72	10.12	10.26	8.84	8.45	6.63	12.49
Merged-chr15-30520254-3	chr15	30519756	30520756	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	347663.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	5.15	4.61	1.85	6.07	4.2	4.82	6.34	4.42	5.0
Merged-chr10-44553836-3	chr10	44553351	44554351	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-95103.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	5.72	6.45	3.7	9.45	8.4	6.43	3.17	7.96	6.25
Merged-chr11-63827460-3	chr11	63826956	63827956	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94828.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	15.45	11.52	5.55	8.1	8.4	9.65	22.18	18.13	16.86
Merged-chr6-42310841-3	chr6	42310329	42311329	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013491, intron 18 of 22)	intron (NM_013491, intron 18 of 22)	13811.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	6.86	4.15	3.7	6.75	3.73	0.0	5.28	3.98	0.0
Merged-chr5-135575683-1	chr5	135575183	135576183	+	900.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2634.0	NM_001356630	56221.0	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	5.15	3.69	1.85	8.77	4.2	7.23	0.0	3.1	4.37
Merged-chr11-76945672-3	chr11	76945167	76946167	+	900.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	11.0	NM_178645	104184.0	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	32.04	32.72	17.57	51.28	33.12	26.53	38.02	35.82	11.87
Merged-chr6-134115765-3	chr6	134115287	134116287	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	80087.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	38.9	41.93	48.1	44.53	27.99	37.78	89.78	67.21	83.06
Merged-chr17-48275110-3	chr17	48274594	48275594	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172623, exon 6 of 6)	3' UTR (NM_172623, exon 6 of 6)	10799.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	48.05	35.48	24.05	31.04	27.06	53.05	54.92	61.9	38.1
Merged-chr16-29944141-3	chr16	29943637	29944637	+	900.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34987.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	30.32	35.48	20.35	30.36	22.39	27.33	33.8	31.84	21.86
Merged-chr9-20645329-3	chr9	20644814	20645814	+	900.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286530)	promoter-TSS (NM_001286530)	511.0	NR_153859	66177.0	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	272.3	275.09	206.26	207.81	191.27	158.35	185.89	213.57	136.77
Merged-chr7-88327675-1	chr7	88327175	88328175	+	900.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49590.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.86	5.07	1.85	5.4	3.73	4.82	0.0	1.77	3.75
Merged-chr10-43841232-3	chr10	43840726	43841726	+	900.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	15319.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	24.6	29.49	29.6	35.09	39.19	42.6	44.36	55.27	21.23
Merged-chr6-50379388-3	chr6	50378895	50379895	+	900.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	3442.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	55.49	63.59	50.87	43.86	30.32	38.58	39.08	48.64	21.23
Merged-chr10-94344686-1	chr10	94344186	94345186	+	900.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	32737.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	1.72	1.38	1.85	4.05	0.47	3.22	6.34	10.17	15.61
Merged-chr11-69416080-3	chr11	69415594	69416594	+	900.1825560000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2419.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	87.52	46.08	63.82	67.47	20.53	59.48	128.85	79.59	77.44
Merged-chr4-128638695-1	chr4	128638195	128639195	+	900.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16007.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	2.29	4.15	3.7	1.35	0.93	4.82	8.45	7.96	4.37
Merged-chr9-110893649-3	chr9	110893128	110894128	+	900.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153354, intron 17 of 25)	intron (NR_153354, intron 17 of 25)	13306.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	26.31	17.51	7.4	41.16	33.12	39.39	32.74	39.8	22.48
Merged-chr7-80208961-2	chr7	80208482	80209482	+	900.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	10541.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	53.2	43.77	40.7	51.95	41.99	22.51	36.97	24.76	14.99
Merged-chr7-44136407-3	chr7	44135914	44136914	+	900.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008454)	promoter-TSS (NM_008454)	-876.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	6.29	12.9	7.4	16.87	5.6	7.23	7.39	8.4	2.5
Merged-chr15-102311667-3	chr15	102311158	102312158	+	900.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356312, intron 13 of 30)	PB1D10|SINE|Alu	-14458.0	NM_027044	56612.0	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	4.58	1.38	1.85	2.02	1.87	3.22	4.22	2.65	4.37
Merged-chr3-130729562-3	chr3	130729075	130730075	+	900.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005859, intron 1 of 4)	intron (NM_001005859, intron 1 of 4)	754.0	NM_001199350	619547.0	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	183.06	174.64	98.97	160.58	135.75	114.14	111.96	112.75	90.56
Merged-chr5-3516892-3	chr5	3516379	3517379	+	900.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 6 of 7)	intron (NM_009873, intron 6 of 7)	-26954.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	19.45	15.67	11.1	14.84	11.2	10.45	10.56	5.75	2.5
Merged-chr4-53860191-3	chr4	53859685	53860685	+	900.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028053, exon 6 of 6)	3' UTR (NM_028053, exon 6 of 6)	34140.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.0	6.45	3.7	8.77	7.46	4.82	6.34	1.77	5.0
Merged-chr5-103746940-3	chr5	103746434	103747434	+	900.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7228.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	18.31	21.2	9.25	16.19	7.93	10.45	14.79	14.15	9.99
Merged-chr12-52850542-3	chr12	52850050	52851050	+	900.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	151167.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	34.32	18.43	17.57	4.05	7.46	4.82	6.34	5.75	5.62
Merged-chr8-3288751-2	chr8	3288261	3289261	+	900.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-9144.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	1.72	6.91	11.1	2.7	3.73	0.0	6.34	1.77	3.12
Merged-chr5-111192109-1	chr5	111191609	111192609	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-138588.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	1.72	3.23	5.55	6.75	3.27	6.43	3.17	0.88	3.75
Merged-chr4-107686276-1	chr4	107685776	107686776	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	2.29	0.46	0.0	17.54	17.26	10.45	3.17	0.88	0.62
Merged-chr3-89520080-3	chr3	89519570	89520570	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080466)	promoter-TSS (NM_080466)	-94.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	1.72	4.15	1.85	10.12	6.06	6.43	1.06	2.21	5.62
Merged-chr16-33744867-1	chr16	33744367	33745367	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	intron (NM_175256, intron 10 of 14)	-49170.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	47.48	52.53	69.37	69.5	44.78	52.25	76.05	87.99	53.71
Merged-chr2-128828648-3	chr2	128828143	128829143	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355629, intron 5 of 18)	intron (NM_001355629, intron 5 of 18)	10340.0	NM_001355629	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	46.91	40.55	46.25	53.98	48.52	41.8	47.53	40.68	21.23
Merged-chr10-8353711-3	chr10	8353190	8354190	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	165135.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.29	11.06	7.4	4.05	3.73	3.22	8.45	6.19	3.75
Merged-chr8-94802529-3	chr8	94802033	94803033	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7920.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	5.72	3.23	0.0	2.02	4.67	2.41	7.39	4.86	1.87
Merged-chr14-50936821-3	chr14	50936264	50937264	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-5915.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	18.88	25.34	27.75	29.01	26.12	17.68	42.25	58.37	31.23
Merged-chr17-78939185-2	chr17	78938681	78939681	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028611, intron 3 of 9)	intron (NM_028611, intron 3 of 9)	2046.0	NM_028611	73694.0	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	1.72	2.3	1.85	4.05	4.67	11.25	8.45	6.19	14.99
Merged-chr10-53616454-1	chr10	53615954	53616954	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027830, intron 5 of 13)	intron (NM_027830, intron 5 of 13)	13985.0	NM_027830	71567.0	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	88.67	92.16	98.97	97.16	87.24	82.79	121.46	122.92	44.97
Merged-chr9-95562232-1	chr9	95561732	95562732	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198414)	TTS (NM_198414)	2415.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	84.66	112.43	91.57	103.91	118.03	101.28	210.18	205.17	100.55
Merged-chr13-48931943-1	chr13	48931443	48932443	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033268, intron 5 of 17)	intron (NM_001033268, intron 5 of 17)	35885.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	4.58	8.75	16.65	14.17	9.33	27.33	12.67	10.61	13.74
Merged-chr1-93635161-3	chr1	93634680	93635680	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021537, intron 2 of 11)	CpG	547.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	86.95	59.9	61.97	86.36	90.04	53.85	68.65	55.27	43.09
Merged-chr18-30584043-3	chr18	30583547	30584547	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	311182.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.0	4.61	1.85	6.07	3.73	3.22	7.39	7.96	7.49
Merged-chr1-88235241-1	chr1	88234741	88235741	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001281466, exon 10 of 42)	exon (NM_001281466, exon 10 of 42)	8221.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	9.15	4.61	5.55	5.4	4.67	12.06	7.39	12.38	18.11
Merged-chr16-92822267-1	chr16	92821767	92822767	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	3807.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	22.31	19.81	15.72	33.06	20.99	13.66	13.73	16.36	16.24
Merged-chr5-105519894-1	chr5	105519394	105520394	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	CpG	423.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	122.99	129.02	120.24	133.59	120.83	118.96	79.21	73.84	48.09
Merged-chr2-103009464-1	chr2	103008964	103009964	+	900.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63C|DNA|hAT-Blackjack	64049.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	34.32	68.2	49.95	62.07	49.92	106.9	61.26	68.98	66.82
Merged-chr4-141658906-3	chr4	141658308	141659308	+	900.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	5307.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	48.05	28.57	36.07	43.18	50.85	52.25	55.98	34.93	18.74
Merged-chr9-90061131-3	chr9	90060623	90061623	+	899.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 2 of 10)	intron (NM_001312649, intron 2 of 10)	6856.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	159.03	183.85	130.42	131.57	120.83	75.56	98.23	145.92	66.2
Merged-chr17-10328614-3	chr17	10328137	10329137	+	899.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045461, intron 2 of 2)	intron (NR_045461, intron 2 of 2)	4035.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	16.02	11.06	6.47	26.31	15.86	12.86	21.12	13.27	8.74
Merged-chr7-80688876-4	chr7	80688415	80689415	+	899.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173863)	promoter-TSS (NM_173863)	-38.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	68.07	49.76	96.2	60.72	41.05	69.93	95.06	43.33	54.96
Merged-chr14-22085567-3	chr14	22085082	22086082	+	899.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	65870.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	5.72	3.23	5.55	1.35	1.4	4.02	3.17	0.88	2.5
Merged-chr8-104176116-3	chr8	104175632	104176632	+	899.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141925, intron 1 of 4)	intron (NM_001141925, intron 1 of 4)	5619.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	14.87	4.61	0.0	8.1	1.87	8.04	9.51	3.1	4.37
Merged-chr9-59598800-3	chr9	59598305	59599305	+	899.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361099, intron 2 of 10)	(TTC)n|Simple_repeat|Simple_repeat	9517.0	NM_001311092	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	23.45	30.87	25.9	35.09	8.4	34.56	29.57	11.5	29.98
Merged-chr11-75463063-3	chr11	75462551	75463551	+	899.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029739)	promoter-TSS (NR_029739)	-665.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	64.64	32.25	36.07	63.42	34.06	42.6	40.14	37.58	13.12
Merged-chr5-12455319-2	chr5	12454812	12455812	+	899.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028882, intron 2 of 17)	intron (NM_028882, intron 2 of 17)	72146.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.0	0.46	0.0	1.35	2.33	0.0	3.17	2.65	6.25
Merged-chr7-30634824-3	chr7	30634325	30635325	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007959, exon 4 of 6)	exon (NM_007959, exon 4 of 6)	1027.0	NM_007959	14008.0	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	1.14	2.76	3.7	8.1	2.8	4.02	3.17	1.77	3.75
Merged-chr16-36665238-3	chr16	36664752	36665752	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MER2|DNA|TcMar-Tigger	825.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	364.97	409.64	157.24	346.8	267.78	140.66	325.31	375.4	129.9
Merged-chr19-14668646-3	chr19	14668139	14669139	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70456.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	16.59	9.22	3.7	14.84	5.13	21.7	25.35	16.36	29.98
Merged-chr4-153958066-3	chr4	153957563	153958563	+	899.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163019, intron 1 of 2)	intron (NM_001163019, intron 1 of 2)	826.0	NM_001163019	97159.0	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	69.22	93.54	61.97	74.89	97.5	52.25	79.21	75.61	37.47
Merged-chr4-136129551-3	chr4	136129046	136130046	+	899.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-14276.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	11.44	4.61	16.65	12.14	7.0	4.02	31.69	12.82	12.49
Merged-chr11-94630968-2	chr11	94630476	94631476	+	899.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133807, intron 1 of 6)	MIR|SINE|MIR	1152.0	NM_133807	98238.0	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	28.03	23.04	12.02	21.59	6.53	12.06	10.56	8.84	9.37
Merged-chr15-72917605-3	chr15	72917104	72918104	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-107280.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.29	2.76	5.55	10.12	5.13	7.23	5.28	6.63	3.12
Merged-chr5-86190535-3	chr5	86190055	86191055	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	ORR1C2|LTR|ERVL-MaLR	7346.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	46.34	40.55	24.05	3.37	4.2	4.82	25.35	29.63	31.23
Merged-chr19-9837142-3	chr19	9836637	9837637	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	62396.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	4.0	1.38	3.7	6.07	3.27	9.65	3.17	2.21	6.25
Merged-chr19-6141603-3	chr19	6141116	6142116	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019722)	promoter-TSS (NM_019722)	-479.0	NM_019722	56327.0	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	145.87	131.32	104.52	152.49	137.15	151.11	162.65	161.39	102.42
Merged-chr11-97838425-3	chr11	97837928	97838928	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010688, exon 7 of 7)	3' UTR (NM_010688, exon 7 of 7)	-2352.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	29.17	20.74	19.42	39.81	21.93	18.49	61.26	47.75	22.48
Merged-chr14-44049726-3	chr14	44049216	44050216	+	899.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43298.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	60.64	49.76	50.87	43.18	20.53	48.23	24.29	19.01	31.23
Merged-chr2-160093360-2	chr2	160092830	160093830	+	899.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76677.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	25.74	25.34	18.5	27.66	37.32	24.11	64.43	49.96	47.46
Merged-chr8-70701515-3	chr8	70701034	70702034	+	899.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010592)	TTS (NM_010592)	3795.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	29.75	17.51	15.72	33.74	12.6	19.29	24.29	14.15	9.99
Merged-chr3-152105578-3	chr3	152105076	152106076	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016867, intron 4 of 5)	intron (NM_016867, intron 4 of 5)	60324.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	5.72	2.76	1.85	6.75	3.27	3.22	3.17	0.44	0.0
Merged-chr7-98120464-3	chr7	98119959	98120959	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256081)	promoter-TSS (NM_001256081)	-966.0	NM_008663	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	4.0	3.23	5.55	4.72	0.47	1.61	3.17	0.88	2.5
Merged-chr16-76786587-3	chr16	76786079	76787079	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7487.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	3.43	1.38	9.25	4.72	1.87	0.8	3.17	3.1	2.5
Merged-chr5-135806801-3	chr5	135806308	135807308	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11298.0	NM_021403	58212.0	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	6.86	3.23	2.77	3.37	0.93	8.04	0.0	0.0	1.25
Merged-chr1-95314914-3	chr1	95314420	95315420	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	1292.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	125.85	163.58	110.07	138.99	153.01	113.33	98.23	164.49	78.69
Merged-chr15-12373738-3	chr15	12373244	12374244	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081064, exon 19 of 24)	exon (NM_001081064, exon 19 of 24)	52248.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	14.87	5.53	5.55	12.14	6.53	15.27	4.22	5.31	6.25
Merged-chr4-133614613-3	chr4	133614069	133615069	+	899.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 3 of 7)	intron (NM_001017968, intron 3 of 7)	-12401.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	95.53	82.02	46.25	245.6	185.67	140.66	21.12	14.59	9.99
Merged-chr17-8901680-3	chr17	8901176	8902176	+	899.761108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	MTC|LTR|ERVL-MaLR	51691.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	46.91	66.81	42.55	48.58	51.32	60.28	52.81	52.62	25.61
Merged-chr5-32930957-3	chr5	32930451	32931451	+	899.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025426, intron 25 of 42)	intron (NM_001025426, intron 25 of 42)	67230.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	14.87	23.04	20.35	17.54	14.93	23.31	13.73	10.17	12.49
Merged-chr9-106367177-3	chr9	106366693	106367693	+	899.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1439.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	44.05	40.55	58.27	50.6	50.38	64.3	61.26	77.82	48.09
Merged-chr5-92318778-2	chr5	92318276	92319276	+	899.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33C|LTR|ERVL	-8752.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	14.87	14.75	27.75	19.57	10.73	30.54	27.46	30.51	13.12
Merged-chr19-55708111-3	chr19	55707594	55708594	+	899.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5890.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	14.87	21.66	7.4	21.59	10.73	13.66	30.63	19.46	11.24
Merged-chr17-35127057-3	chr17	35126558	35127558	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_033477, exon 3 of 3)	5' UTR (NM_033477, exon 3 of 3)	656.0	NM_033477	114585.0	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	141.87	149.29	139.67	138.99	122.23	184.87	103.51	144.15	121.16
Merged-chr10-25362387-3	chr10	25361862	25362862	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	2564.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	49.2	57.6	21.27	52.63	41.52	36.17	83.44	57.92	29.98
Merged-chr9-78463544-3	chr9	78463041	78464041	+	899.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026658, intron 9 of 11)	intron (NM_026658, intron 9 of 11)	15331.0	NM_026658	68291.0	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	23.45	36.86	24.05	62.07	48.05	34.56	65.48	69.42	27.48
Merged-chr13-43549489-3	chr13	43548913	43549913	+	899.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 5 of 8)	intron (NM_001081059, intron 5 of 8)	10778.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	164.75	152.98	125.79	161.93	154.88	117.35	138.36	151.22	84.31
Merged-chr4-103123262-3	chr4	103122752	103123752	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3862.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	41.19	64.51	69.37	45.21	25.19	32.96	79.21	61.9	38.72
Merged-chr10-19098914-3	chr10	19098446	19099446	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42803.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	42.9	41.01	41.62	45.88	27.06	25.72	65.48	47.75	40.59
Merged-chr18-38348767-3	chr18	38348271	38349271	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9778.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	26.31	22.12	16.65	25.64	21.46	24.92	16.9	16.36	15.61
Merged-chr1-64367196-1	chr1	64366696	64367696	+	899.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165608.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	55.49	52.07	36.07	51.28	45.72	51.44	43.3	54.83	38.72
Merged-chr2-160018544-3	chr2	160018056	160019056	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	1903.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	121.28	133.17	86.95	148.44	88.17	169.6	120.41	128.67	74.32
Merged-chr15-100683239-3	chr15	100682735	100683735	+	899.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 4 of 7)	intron (NM_033612, intron 4 of 7)	4685.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	21.74	7.83	13.87	12.14	6.53	7.23	11.62	10.61	9.37
Merged-chr8-120114531-2	chr8	120114057	120115057	+	899.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	CpG	405.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	102.97	47.0	66.6	130.22	85.84	110.92	158.43	93.3	51.84
Merged-chr11-109410734-2	chr11	109410193	109411193	+	899.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15253.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	8.01	4.15	6.47	14.17	10.73	17.68	29.57	15.48	18.74
Merged-chr16-23557900-2	chr16	23557399	23558399	+	899.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-37084.0	NM_001359083	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	15.45	17.51	14.8	15.52	6.06	15.27	17.96	13.71	24.36
Merged-chr9-119076756-4	chr9	119076347	119077347	+	899.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 3 of 14)	intron (NM_019676, intron 3 of 14)	11414.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	28.6	20.27	12.02	53.98	58.78	50.64	70.76	92.86	46.84
Merged-chr1-144313573-3	chr1	144313071	144314071	+	899.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64467.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	77.8	90.31	85.1	93.79	66.71	85.2	110.9	111.87	97.43
Merged-chr6-87517275-3	chr6	87516778	87517778	+	899.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	15981.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	44.62	47.46	31.45	44.53	35.92	57.07	45.42	45.54	31.23
Merged-chr9-104402444-3	chr9	104401926	104402926	+	899.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23687.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	10.3	3.69	8.32	14.17	12.13	16.08	25.35	10.61	11.24
Merged-chr1-132316818-4	chr1	132316270	132317270	+	899.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195025, intron 1 of 7)	intron (NM_001195025, intron 1 of 7)	645.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	203.08	268.64	227.54	200.39	202.0	217.02	208.07	225.51	171.12
Merged-chr5-92000999-2	chr5	92000509	92001509	+	899.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13536.0	NM_001177577	381651.0	Mm.332494	NM_001177577	ENSMUSG00000096035	Odaph	Gm1045|Gm1045-a|Gm1045-b	odontogenesis associated phosphoprotein	protein-coding	2.29	2.3	7.4	10.8	2.33	9.65	6.34	7.96	8.74
Merged-chr9-114780512-4	chr9	114779942	114780942	+	899.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	1551.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	52.63	43.77	40.7	60.05	46.18	50.64	172.16	125.58	86.18
Merged-chr7-110787491-1	chr7	110786991	110787991	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14887.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	10.87	8.29	7.4	27.66	14.46	20.09	2.11	8.84	5.62
Merged-chr1-136640126-1	chr1	136639626	136640626	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	15225.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	16.02	8.29	10.17	7.42	6.53	12.06	11.62	7.96	8.74
Merged-chr15-100599517-2	chr15	100599019	100600019	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304965, intron 1 of 10)	CpG	465.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	311.77	224.86	234.01	297.55	221.59	166.38	211.24	179.08	146.14
Merged-chr6-30076380-2	chr6	30075896	30076896	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164229)	promoter-TSS (NM_001164229)	75.0	NM_001164229	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	10.3	5.99	12.02	6.07	5.6	8.04	1.06	0.44	3.75
Merged-chr10-13933514-1	chr10	13933014	13934014	+	899.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32561.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.29	0.92	0.0	4.72	5.13	3.22	4.22	4.42	2.5
Merged-chr10-24591986-2	chr10	24591496	24592496	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3446.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.0	3.69	2.77	2.02	1.4	1.61	4.22	3.54	7.49
Merged-chr9-113792770-3	chr9	113792299	113793299	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	-531.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	81.8	100.91	61.97	93.11	93.77	81.18	107.73	109.66	53.08
Merged-chr2-66158733-3	chr2	66158212	66159212	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33919.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	14.87	19.81	17.57	15.52	13.06	20.09	20.07	4.86	2.5
Merged-chr12-8507530-2	chr12	8507045	8508045	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7536.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.72	14.28	9.25	20.24	20.06	26.53	43.3	34.05	23.73
Merged-chr8-22889622-2	chr8	22889126	22890126	+	899.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	30087.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	12.59	22.12	8.32	12.82	16.79	17.68	28.52	33.6	15.61
Merged-chrX-13502469-3	chrX	13501962	13502962	+	899.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	34790.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	41.19	33.18	27.75	22.94	14.0	20.9	17.96	9.73	28.1
Merged-chr10-22165801-3	chr10	22165302	22166302	+	899.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	7193.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	70.36	36.4	22.2	51.28	30.79	32.96	20.07	30.07	8.74
Merged-chr4-138066505-3	chr4	138065988	138066988	+	899.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	68663.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	119.56	142.38	53.65	65.45	56.45	52.25	107.73	145.92	64.95
Merged-chr2-19316363-3	chr2	19315858	19316858	+	899.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A-int|LTR|ERVK	-27959.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	5.72	6.91	3.7	2.02	0.47	4.82	11.62	2.65	6.25
Merged-chr2-84504472-3	chr2	84503991	84504991	+	899.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046046, intron 1 of 2)	MTEa|LTR|ERVL-MaLR	2382.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	36.61	29.03	21.27	33.06	33.59	16.88	55.98	72.52	37.47
Merged-chr2-3323331-3	chr2	3322846	3323846	+	899.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9282.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	35.47	41.01	27.75	31.71	25.19	33.76	34.85	47.31	23.11
Merged-chr15-99396218-1	chr15	99395718	99396718	+	899.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	URR1A|DNA|hAT-Charlie	2999.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	74.94	83.4	61.97	143.04	112.43	114.94	57.03	68.98	61.2
Merged-chr8-25241137-5	chr8	25240641	25241641	+	899.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39599.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	30.32	37.32	57.35	44.53	26.12	30.54	45.42	53.5	29.98
Merged-chr13-37827851-3	chr13	37827279	37828279	+	899.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	CpG	386.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	77.23	81.56	75.85	75.57	83.04	95.65	99.28	77.38	45.59
Merged-chr11-86908066-3	chr11	86907586	86908586	+	899.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	85676.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	59.49	23.04	31.45	31.71	32.66	43.4	43.3	31.84	29.98
Merged-chrX-142227856-3	chrX	142227374	142228374	+	899.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290533)	promoter-TSS (NM_001290533)	-63.0	NM_001161430	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	77.8	99.99	61.97	75.57	72.31	73.14	101.39	171.12	82.44
Merged-chrX-7312730-3	chrX	7312209	7313209	+	899.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	L1M5|LINE|L1	6649.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	40.04	36.4	35.15	35.76	24.72	41.8	34.85	21.22	19.98
Merged-chr2-129596531-1	chr2	129596031	129597031	+	899.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	1069.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	306.05	354.34	262.69	327.24	287.84	292.58	280.95	416.52	202.35
Merged-chr8-71382782-3	chr8	71382298	71383298	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010150)	promoter-TSS (NM_010150)	-846.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	72.65	87.09	65.67	70.17	59.71	70.73	58.09	58.81	37.47
Merged-chr11-4123381-3	chr11	4122881	4123881	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4652.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	39.47	21.66	12.95	29.01	26.59	40.19	31.69	21.67	21.23
Merged-chrX-56566142-3	chrX	56565663	56566663	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16557.0	NM_001033372	270599.0	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	8.01	1.84	0.0	5.4	3.73	4.82	3.17	2.65	2.5
Merged-chr8-103632668-3	chr8	103632169	103633169	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045730, intron 1 of 4)	intron (NR_045730, intron 1 of 4)	28870.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	4.0	3.23	1.85	4.05	0.93	4.82	3.17	1.77	6.87
Merged-chr9-45406342-3	chr9	45405869	45406869	+	899.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007503, intron 1 of 5)	(TG)n|Simple_repeat|Simple_repeat	292.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	100.68	118.42	93.42	131.57	100.3	123.78	79.21	104.35	51.84
Merged-chr7-141167977-2	chr7	141167471	141168471	+	899.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 1 of 9)	intron (NM_001172100, intron 1 of 9)	715.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	85.81	66.81	43.47	89.06	81.64	88.42	109.84	90.64	51.21
Merged-chr5-93264799-3	chr5	93264279	93265279	+	899.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2794.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	31.46	13.82	41.62	18.89	7.0	17.68	40.14	31.39	23.73
Merged-chr6-122557166-3	chr6	122556687	122557687	+	899.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009645, intron 1 of 4)	intron (NM_009645, intron 1 of 4)	3378.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	9.72	10.6	0.0	13.49	8.86	15.27	10.56	7.96	6.25
Merged-chr2-165234733-3	chr2	165234188	165235188	+	899.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174988)	promoter-TSS (NM_174988)	49.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	3.43	1.84	6.47	4.72	2.33	4.82	6.34	0.44	6.25
Merged-chr15-90305164-3	chr15	90304658	90305658	+	899.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48552.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	9.15	5.99	5.55	10.8	13.06	14.47	9.51	6.63	12.49
Merged-chrX-140540997-2	chrX	140540498	140541498	+	899.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_122039, exon 3 of 3)	non-coding (NR_122039, exon 3 of 3)	1670.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	69.22	80.18	58.27	86.36	46.18	31.35	63.37	66.77	56.83
Merged-chr3-15276162-4	chr3	15275714	15276714	+	899.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	56088.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	37.18	34.1	16.65	35.76	41.52	28.13	21.12	33.6	19.36
Merged-chr6-15715215-3	chr6	15714744	15715744	+	899.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-5417.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	21.17	17.97	14.8	16.87	14.46	22.51	13.73	18.57	13.74
Merged-chr17-6782164-3	chr17	6781651	6782651	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	629.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	192.78	274.63	128.57	223.33	295.3	176.03	213.35	256.46	117.41
Merged-chr8-83425452-3	chr8	83424945	83425945	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009904, intron 13 of 14)	intron (NM_009904, intron 13 of 14)	17217.0	NM_001285992	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	9.72	8.29	10.17	14.84	4.2	13.66	6.34	2.21	3.75
Merged-chr15-39933606-3	chr15	39933103	39934103	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	10391.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	14.3	8.29	3.7	16.19	9.8	4.82	8.45	4.42	6.87
Merged-chr11-119394497-3	chr11	119394005	119395005	+	899.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4033.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	27.46	14.75	25.9	16.19	17.73	21.7	65.48	46.87	29.35
Merged-chr9-88702340-3	chr9	88701844	88702844	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	URR1B|DNA|hAT-Charlie	17243.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	14.87	9.22	11.1	6.75	7.46	3.22	17.96	9.29	11.87
Merged-chr7-142533313-4	chr7	142532842	142533842	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	225.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	93.24	87.55	91.57	96.48	108.7	81.99	127.8	92.41	63.7
Merged-chr6-129499665-2	chr6	129499163	129500163	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138648, intron 3 of 7)	intron (NM_138648, intron 3 of 7)	7502.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	12.01	10.6	11.1	10.8	8.4	18.49	5.28	3.54	5.62
Merged-chr1-172331766-3	chr1	172331250	172332250	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2428.0	NM_001360808	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	41.19	33.64	18.5	31.71	26.59	27.33	21.12	13.27	23.73
Merged-chr19-46607699-3	chr19	46607202	46608202	+	899.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	8596.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	10.87	13.36	9.25	16.19	6.06	12.86	63.37	33.16	12.49
Merged-chr16-65197457-2	chr16	65196982	65197982	+	899.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-91698.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	4.58	3.69	3.7	7.42	3.73	10.45	10.56	3.54	0.0
Merged-chr6-47561025-3	chr6	47560526	47561526	+	899.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	34004.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	17.16	10.14	11.1	14.17	13.53	14.47	9.51	9.29	7.49
Merged-chr17-69177266-3	chr17	69176746	69177746	+	899.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	17890.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	53.2	77.41	61.97	53.98	72.78	57.07	53.87	71.63	56.21
Merged-chr19-37509934-3	chr19	37509461	37510461	+	899.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40457.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	16.02	17.97	21.27	16.19	14.46	12.86	25.35	22.99	21.23
Merged-chr19-56703247-3	chr19	56702736	56703736	+	899.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19136.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	82.95	83.4	35.15	134.27	97.97	70.73	85.55	88.43	30.6
Merged-chr11-95347059-3	chr11	95346544	95347544	+	899.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	B4A|SINE|B4	10026.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	44.05	52.99	36.07	58.7	62.51	73.95	64.43	77.38	48.09
Merged-chr4-49620100-2	chr4	49619594	49620594	+	899.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11966.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	2.29	2.76	1.85	2.7	3.27	2.41	3.17	3.54	6.25
Merged-chr15-101976174-3	chr15	101975674	101976674	+	899.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21887.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	141.87	163.58	191.47	118.08	105.9	196.12	192.23	146.36	129.9
Merged-chrY-1165748-3	chrY	1165236	1166236	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 14 of 26)	intron (NM_009484, intron 14 of 26)	80023.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	37.76	60.82	31.45	39.13	31.26	24.11	55.98	45.1	38.1
Merged-chr16-31867008-2	chr16	31866516	31867516	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357281, intron 21 of 22)	L1M4c|LINE|L1	-11794.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	17.16	12.9	17.57	12.82	7.0	19.29	4.22	7.96	8.12
Merged-chr13-115101930-3	chr13	115101384	115102384	+	899.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033228)	promoter-TSS (NM_001033228)	80.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	8.01	3.69	9.25	11.47	6.06	4.82	11.62	5.31	3.75
Merged-chrX-73718817-3	chrX	73718319	73719319	+	899.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007435, intron 1 of 9)	intron (NM_007435, intron 1 of 9)	-1004.0	NM_001313698	27061.0	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	97.82	106.44	98.05	75.57	76.51	65.91	111.96	118.06	82.44
Merged-chr2-165914490-3	chr2	165914012	165915012	+	899.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29674.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	16.02	5.53	1.85	14.84	4.67	4.02	9.51	3.98	6.25
Merged-chr13-102664219-3	chr13	102663713	102664713	+	899.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29334.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	22.31	33.64	32.37	18.22	14.46	15.27	36.97	37.14	28.73
Merged-chr11-50213643-3	chr11	50213141	50214141	+	899.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2821.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	272.3	211.96	74.0	294.18	219.26	121.37	120.41	113.19	52.46
Merged-chrX-7879996-3	chrX	7879498	7880498	+	899.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138606, intron 3 of 5)	intron (NM_138606, intron 3 of 5)	1692.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	6.86	1.84	1.85	1.35	1.87	6.43	0.0	0.0	2.5
Merged-chr7-96476923-3	chr7	96476398	96477398	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-134934.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	108.69	101.37	90.65	101.88	72.31	103.69	54.92	57.04	49.96
Merged-chr11-68467744-1	chr11	68467244	68468244	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-35275.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	12.01	16.59	23.12	43.18	40.12	25.72	17.96	11.5	9.99
Merged-chr1-169368956-3	chr1	169368447	169369447	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	162517.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	33.18	29.95	9.25	26.99	10.26	8.84	7.39	8.4	3.75
Merged-chr14-103944837-1	chr14	103944337	103945337	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82305.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	4.0	7.83	6.47	10.8	4.2	11.25	12.67	6.63	0.0
Merged-chr3-15575835-1	chr3	15575335	15576335	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001173460)	promoter-TSS (NM_001173460)	-770.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	30.32	63.59	39.77	53.98	93.3	61.09	63.37	44.22	44.34
Merged-chr3-89251613-1	chr3	89251113	89252113	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5140.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	5.15	4.15	0.0	7.42	5.6	2.41	3.17	3.98	2.5
Merged-chr6-53996792-1	chr6	53996292	53997292	+	899.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	18101.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	1.72	7.83	13.87	10.12	8.86	9.65	36.97	20.34	22.48
Merged-chr4-141031922-3	chr4	141031430	141032430	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145958, intron 19 of 35)	intron (NM_001145958, intron 19 of 35)	21293.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	5.15	4.61	9.25	4.72	4.2	8.04	7.39	12.38	9.99
Merged-chr18-50029990-2	chr18	50029500	50030500	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360935)	promoter-TSS (NM_001360935)	-984.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	13.16	11.98	13.87	20.24	7.93	12.06	27.46	19.01	9.99
Merged-chr10-59974839-1	chr10	59974339	59975339	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23069.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	22.31	18.43	25.9	52.63	46.18	46.62	13.73	19.9	20.61
Merged-chr13-13538778-3	chr13	13538302	13539302	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51607.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.15	5.99	12.02	12.14	10.73	4.82	8.45	8.4	2.5
Merged-chr14-63145608-1	chr14	63145108	63146108	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007798, exon 10 of 10)	3' UTR (NM_007798, exon 10 of 10)	23146.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	34.9	28.11	24.05	35.09	41.52	59.48	35.91	31.84	28.1
Merged-chr1-174084991-1	chr1	174084491	174085491	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4047.0	NM_146722	258717.0	Mm.377652	NM_146722	ENSMUSG00000049528	Olfr429	MOR105-1	olfactory receptor 429	protein-coding	4.0	3.23	0.92	2.02	3.73	4.02	3.17	13.71	7.49
Merged-chr12-25217425-1	chr12	25216925	25217925	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88251.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	28.6	17.51	14.8	21.59	20.06	19.29	35.91	26.53	24.98
Merged-chr9-40577358-3	chr9	40576856	40577856	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45973.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	49.2	28.57	45.32	22.27	29.39	33.76	41.19	38.47	33.1
Merged-chr12-108178413-2	chr12	108177897	108178897	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028262, intron 1 of 12)	CpG	887.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	37.76	35.48	59.2	78.94	45.72	58.68	59.15	57.92	34.35
Merged-chr8-104541341-1	chr8	104540841	104541841	+	899.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001301165)	promoter-TSS (NM_001301165)	32.0	NM_001301165	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.57	4.15	2.77	2.02	3.73	3.22	2.11	1.77	1.25
Merged-chr6-89312640-1	chr6	89312140	89313140	+	899.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26915.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	8.01	6.91	5.55	5.4	6.53	4.02	9.51	1.33	10.62
Merged-chr3-107099368-1	chr3	107098868	107099868	+	899.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-2199.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	36.04	23.96	44.4	80.97	64.38	52.25	230.25	177.75	56.83
Merged-chr4-135762620-3	chr4	135762072	135763072	+	898.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085509, exon 2 of 37)	exon (NM_001085509, exon 2 of 37)	2857.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	6.29	2.76	5.55	10.8	1.87	8.84	3.17	3.54	3.75
Merged-chr11-20982189-3	chr11	20981725	20982725	+	898.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109099.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	14.87	11.06	1.85	16.19	7.93	8.84	6.34	2.21	7.49
Merged-chr3-88441134-3	chr3	88440695	88441695	+	898.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105978)	promoter-TSS (NR_105978)	-244.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	23.45	13.82	20.35	30.36	14.93	30.54	20.07	22.11	8.12
Merged-chr15-95828911-3	chr15	95828394	95829394	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	1178.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	167.61	64.05	69.37	98.51	39.19	53.05	87.66	42.89	23.73
Merged-chr10-7474425-3	chr10	7473934	7474934	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029975)	promoter-TSS (NM_029975)	-957.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	34.32	39.63	21.27	51.95	29.39	38.58	49.64	54.83	14.99
Merged-chr15-102671936-3	chr15	102671455	102672455	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026468)	promoter-TSS (NM_026468)	-89.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	88.67	95.38	75.85	214.56	202.0	213.0	275.66	334.28	164.25
Merged-chr5-144932010-3	chr5	144931524	144932524	+	898.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	33806.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	10.3	10.14	3.7	11.47	9.8	3.22	15.84	13.27	6.25
Merged-chr5-113873120-2	chr5	113872601	113873601	+	898.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	35605.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	4.0	0.92	0.0	28.34	20.99	19.29	7.39	4.42	3.12
Merged-chr9-86016139-1	chr9	86015639	86016639	+	898.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173287.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	3.43	1.38	0.0	4.05	9.33	4.82	1.06	0.44	1.25
Merged-chr17-25332479-3	chr17	25331965	25332965	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13097.0	NM_031187	100503895.0	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	12.01	7.37	0.0	12.14	6.06	3.22	2.11	1.77	2.5
Merged-chr9-107313424-1	chr9	107312924	107313924	+	898.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	16765.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	13.73	10.6	11.1	20.92	18.66	14.47	123.57	103.02	40.59
Merged-chr7-45162300-3	chr7	45161811	45162811	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1610.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	6.86	4.61	12.95	9.45	4.2	4.82	6.34	3.54	6.25
Merged-chr7-28726784-3	chr7	28726276	28727276	+	898.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310687, intron 2 of 6)	LTR41|LTR|ERVL	9986.0	NM_015796	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	4.0	5.99	4.62	8.1	3.73	4.82	5.28	3.54	0.0
Merged-chr6-136742544-2	chr6	136742047	136743047	+	898.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	39195.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	13.16	13.36	7.4	16.87	11.66	1.61	10.56	2.21	3.75
Merged-chr6-149409122-2	chr6	149408615	149409615	+	898.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009753, exon 1 of 9)	5' UTR (NM_009753, exon 1 of 9)	131.0	NM_009753	12121.0	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	BICD cargo adaptor 1	protein-coding	8.01	3.23	1.85	7.42	6.53	6.43	2.11	4.42	2.5
Merged-chr17-81636966-3	chr17	81636471	81637471	+	898.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	101416.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	38.9	29.49	22.2	38.46	18.66	27.33	34.85	21.22	18.11
Merged-chr5-125382714-8	chr5	125382171	125383171	+	898.78125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7346.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	21.74	15.67	20.35	10.8	12.13	27.33	20.07	13.71	24.98
Merged-chr4-147960382-3	chr4	147959884	147960884	+	898.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19489.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	9.72	2.76	3.7	4.05	1.87	4.02	1.06	2.21	2.5
Merged-chr13-5777117-3	chr13	5776630	5777630	+	898.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80962.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	25.17	19.81	11.1	10.8	10.73	4.82	13.73	9.29	9.99
Merged-chr8-117264758-2	chr8	117264259	117265259	+	898.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	7740.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	24.6	27.19	21.27	20.24	17.26	26.53	20.07	16.36	19.98
Merged-chr10-91154162-3	chr10	91153659	91154659	+	898.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080129, intron 4 of 8)	intron (NM_001080129, intron 4 of 8)	16391.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	11.44	9.68	11.1	11.47	2.8	9.65	10.56	10.17	15.61
Merged-chr4-43520109-3	chr4	43519623	43520623	+	898.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277875, intron 2 of 8)	intron (NM_001277875, intron 2 of 8)	3431.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	5.15	2.3	1.85	3.37	3.27	1.61	3.17	5.75	7.49
Merged-chr7-55935327-2	chr7	55934827	55935827	+	898.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256131, intron 5 of 5)	intron (NM_001256131, intron 5 of 5)	27166.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	5.72	13.36	16.65	17.54	17.26	17.68	32.74	13.71	16.24
Merged-chr4-150548251-2	chr4	150547753	150548753	+	898.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	103921.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	26.89	17.97	27.75	22.94	12.6	16.08	3.17	4.42	3.75
Merged-chr12-87325646-3	chr12	87325148	87326148	+	898.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-25943.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	7.44	9.22	1.85	6.07	7.46	5.63	3.17	1.77	0.62
Merged-chr2-18765815-3	chr2	18765280	18766280	+	898.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4918.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	74.37	85.71	56.42	106.61	62.51	57.87	77.1	111.87	51.21
Merged-chr8-105265412-3	chr8	105264913	105265913	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033161)	promoter-TSS (NM_001033161)	765.0	NM_015821	50788.0	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	24.03	33.64	51.8	27.66	17.26	33.76	30.63	37.58	23.11
Merged-chr10-67069170-3	chr10	67068664	67069664	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	27824.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	57.78	62.67	33.3	62.75	41.52	45.82	88.72	62.79	56.83
Merged-chr2-157447644-3	chr2	157447163	157448163	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 2 of 13)	intron (NM_001025395, intron 2 of 13)	23370.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	72.08	28.11	35.15	84.34	44.78	30.54	21.12	9.73	19.36
Merged-chr12-73780063-3	chr12	73779505	73780505	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121319.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	30.89	30.87	5.55	76.92	73.24	47.42	87.66	76.05	22.48
Merged-chr17-25681832-3	chr17	25681331	25682331	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35341.0	NM_022422	64337.0	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	33.18	22.12	20.35	43.86	32.19	32.15	28.52	34.49	20.61
Merged-chr13-112811876-3	chr13	112811369	112812369	+	898.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	MIRc|SINE|MIR	11092.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.86	2.3	1.85	2.02	4.2	0.8	10.56	11.05	5.0
Merged-chr5-151070020-2	chr5	151069514	151070514	+	898.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359985, intron 3 of 12)	intron (NM_001359985, intron 3 of 12)	117407.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	2.86	4.15	9.25	8.77	2.8	7.23	11.62	9.73	16.24
Merged-chr4-141681948-3	chr4	141681434	141682434	+	898.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3782.0	NM_023544	69994.0	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	8.58	11.98	8.32	8.77	4.67	8.84	5.28	3.54	12.49
Merged-chr7-122159310-3	chr7	122158719	122159719	+	898.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011121)	promoter-TSS (NM_011121)	-216.0	NM_011121	18817.0	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo like kinase 1	protein-coding	13.73	7.37	3.7	22.27	14.46	10.45	11.62	18.13	11.24
Merged-chr9-110449079-3	chr9	110448550	110449550	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360306, intron 3 of 9)	intron (NM_001360306, intron 3 of 9)	27644.0	NM_001360306	270201.0	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	24.6	9.68	12.95	16.19	7.93	11.25	22.18	12.38	8.74
Merged-chr2-148900521-1	chr2	148900021	148901021	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25009.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	3.43	6.45	16.65	7.42	3.27	7.23	8.45	2.65	1.25
Merged-chr10-67717706-1	chr10	67717206	67718206	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145747.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.58	3.23	3.7	7.42	9.33	0.8	2.11	0.88	6.25
Merged-chr2-129912461-1	chr2	129911961	129912961	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99879.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	4.58	1.38	3.7	50.6	29.39	35.37	4.22	1.77	1.25
Merged-chr3-152427899-3	chr3	152427398	152428398	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001287139, exon 4 of 14)	exon (NM_001287139, exon 4 of 14)	31214.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	44.05	20.74	12.95	51.28	34.99	28.13	21.12	17.24	11.87
Merged-chr17-24672371-3	chr17	24671873	24672873	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	2686.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	14.87	17.51	12.95	7.42	7.0	17.68	8.45	3.54	5.62
Merged-chr15-25987237-3	chr15	25986724	25987724	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144523, exon 3 of 6)	exon (NM_144523, exon 3 of 6)	2858.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	20.02	14.75	9.25	18.89	8.86	8.04	11.62	15.03	8.74
Merged-chr14-78548992-1	chr14	78548492	78549492	+	898.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12132.0	NM_001164503	219181.0	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	6.29	6.45	7.4	18.22	13.53	4.82	6.34	5.75	5.0
Merged-chr16-13671419-3	chr16	13670903	13671903	+	898.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025653)	promoter-TSS (NM_025653)	-455.0	NM_025976	67118.0	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	157.89	183.39	160.02	121.45	146.48	164.78	182.72	201.63	89.31
Merged-chr10-118085979-3	chr10	118085479	118086479	+	898.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55808.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	279.16	235.0	169.27	301.6	271.51	234.71	255.6	287.85	144.27
Merged-chr9-41081106-2	chr9	41080603	41081603	+	898.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-1597.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	10.3	8.29	1.85	4.72	4.2	16.08	25.35	10.61	6.25
Merged-chr9-45221742-3	chr9	45221250	45222250	+	898.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-17675.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	35.47	35.02	17.57	40.48	30.79	39.39	19.01	31.84	18.74
Merged-chr2-163987667-3	chr2	163987173	163988173	+	898.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCb|LINE|L1	-7524.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	50.91	38.71	41.62	52.63	47.12	38.58	48.58	29.63	34.97
Merged-chr11-3190151-7	chr11	3189631	3190631	+	898.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	RLTR33|LTR|ERVK	3332.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	54.92	74.65	111.92	84.34	98.43	98.87	76.05	58.37	156.13
Merged-chr14-51088693-3	chr14	51088069	51089069	+	898.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2508.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	126.42	128.1	105.44	85.69	82.11	49.83	95.06	84.01	44.97
Merged-chr18-73808742-3	chr18	73808247	73809247	+	898.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	6645.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	16.02	23.96	30.52	14.84	21.46	22.51	29.57	24.32	23.11
Merged-chr17-35980733-1	chr17	35980233	35981233	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001282013)	promoter-TSS (NM_001282013)	778.0	NM_008136	14670.0	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	84.66	67.74	98.05	91.09	82.11	91.63	82.38	86.22	71.2
Merged-chr19-3907506-2	chr19	3907007	3908007	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001167784)	promoter-TSS (NM_001167784)	-374.0	NM_001136091	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	390.71	379.23	306.16	339.38	337.75	246.76	393.96	532.81	252.31
Merged-chr9-40832205-1	chr9	40831705	40832705	+	898.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	30932.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	2.86	1.84	0.0	4.05	0.93	6.43	28.52	20.34	16.24
Merged-chr12-45081787-1	chr12	45081287	45082287	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7304.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.57	4.61	3.7	2.7	8.4	0.0	2.11	4.42	2.5
Merged-chr1-143992855-4	chr1	143992389	143993389	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	11260.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	39.47	55.75	36.07	37.11	34.06	61.09	38.02	44.66	44.97
Merged-chr19-53547738-1	chr19	53547238	53548238	+	898.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18420.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	1.72	5.07	5.55	2.7	4.67	4.82	2.11	0.44	0.0
Merged-chr18-20694167-3	chr18	20693682	20694682	+	898.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-28922.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	21.17	23.96	12.95	23.62	19.59	16.08	7.39	13.71	2.5
Merged-chr8-40965049-1	chr8	40964549	40965549	+	898.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 2 of 5)	ORR1F|LTR|ERVL-MaLR	38816.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	1.14	0.92	0.0	4.05	3.73	1.61	7.39	3.98	9.99
Merged-chr18-67490983-3	chr18	67490495	67491495	+	898.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176832, exon 14 of 14)	3' UTR (NM_176832, exon 14 of 14)	26146.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	10.87	8.75	3.7	19.57	21.46	4.82	10.56	9.73	7.49
Merged-chrX-158308736-3	chrX	158308237	158309237	+	898.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-265540.0	NM_177751	245684.0	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	4.0	2.3	1.85	2.7	1.4	2.41	2.11	2.65	0.0
Merged-chr4-34551365-5	chr4	34550900	34551900	+	898.470459	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	785.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	129.86	116.58	119.32	146.41	82.11	93.24	148.92	81.8	73.69
Merged-chr4-154925966-3	chr4	154925464	154926464	+	898.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 3 of 7)	intron (NM_178931, intron 3 of 7)	2113.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	25.74	32.25	14.8	23.62	18.66	13.66	38.02	33.16	10.62
Merged-chr19-11050514-3	chr19	11049989	11050989	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	77.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	106.97	163.58	81.4	130.9	95.63	101.28	129.91	168.91	111.17
Merged-chr10-111977777-3	chr10	111977267	111978267	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178610, intron 5 of 9)	intron (NM_178610, intron 5 of 9)	5072.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	7.44	6.91	3.7	6.07	1.4	1.61	8.45	11.94	3.75
Merged-chr7-55958001-3	chr7	55957511	55958511	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	intron (NM_023647, intron 1 of 6)	4482.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	100.11	144.23	120.24	100.53	92.37	99.67	172.16	210.03	81.81
Merged-chr14-31380460-3	chr14	31379951	31380951	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37226.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	93.24	94.46	86.02	101.88	59.71	73.14	119.35	152.11	83.69
Merged-chr11-55386626-3	chr11	55386138	55387138	+	898.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33442.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	2.86	2.76	0.0	4.72	0.93	4.82	4.22	2.65	2.5
Merged-chr18-58160669-3	chr18	58160181	58161181	+	898.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010181, intron 5 of 64)	intron (NM_010181, intron 5 of 64)	49245.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	13.73	14.28	7.4	19.57	16.79	9.65	11.62	8.84	5.62
Merged-chr6-29998964-3	chr6	29998474	29999474	+	898.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	13645.0	NR_040263	76419.0	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	6.86	4.61	5.55	4.72	6.53	6.43	5.28	10.61	5.0
Merged-chr12-32893456-3	chr12	32892934	32893934	+	898.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	60355.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	33.75	36.4	17.57	23.62	24.72	40.99	60.2	59.25	55.58
Merged-chr13-119817988-3	chr13	119817458	119818458	+	898.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	12259.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	25.74	25.8	13.87	9.45	14.93	24.11	19.01	19.9	22.48
Merged-chr5-77174980-3	chr5	77174471	77175471	+	898.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36234.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	6.29	11.06	12.02	6.07	4.2	4.82	12.67	13.27	13.74
Merged-chr11-120733776-3	chr11	120733255	120734255	+	898.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-1734.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	7.44	8.75	16.65	26.31	9.33	28.13	11.62	15.03	11.87
Merged-chr11-60953963-3	chr11	60953451	60954451	+	898.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21894.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	4.58	5.07	7.4	4.05	0.93	0.8	2.11	3.1	3.75
Merged-chr7-106644654-2	chr7	106644135	106645135	+	898.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277179)	promoter-TSS (NM_001277179)	10.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	21.74	24.88	34.22	14.84	7.93	16.08	108.79	145.47	56.83
Merged-chr17-71250245-1	chr17	71249745	71250745	+	898.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164885)	TTS (NM_001164885)	45591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	62.35	52.99	48.1	125.5	100.77	86.01	49.64	40.68	23.11
Merged-chr13-64364461-3	chr13	64363963	64364963	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009984, intron 7 of 7)	B4A|SINE|B4	6057.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	9.72	5.99	5.55	4.05	3.27	0.8	5.28	3.54	1.25
Merged-chr3-95511973-3	chr3	95511485	95512485	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12775.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	1.72	5.07	5.55	14.84	10.73	6.43	5.28	1.33	14.36
Merged-chr4-142021873-3	chr4	142021369	142022369	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	3971.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	123.56	95.84	114.69	132.24	99.37	122.98	123.57	171.12	106.79
Merged-chr16-11286089-3	chr16	11285581	11286581	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-27728.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	14.3	11.06	18.5	14.84	6.53	8.04	28.52	18.13	9.99
Merged-chr13-17977832-3	chr13	17977315	17978315	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15536.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	53.2	82.94	61.97	53.98	49.92	52.25	102.45	95.07	42.47
Merged-chr13-20039825-1	chr13	20039325	20040325	+	898.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50682.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.86	0.92	0.0	3.37	4.2	4.02	3.17	2.21	1.25
Merged-chr12-52480710-3	chr12	52480224	52481224	+	898.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_136881)	promoter-TSS (NR_136881)	-115.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	18.88	27.19	17.57	17.54	19.59	23.31	36.97	26.53	14.99
Merged-chr10-80932399-3	chr10	80931895	80932895	+	898.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008655)	TTS (NM_008655)	2304.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	41.76	18.43	18.5	34.41	20.99	32.15	57.03	39.8	32.48
Merged-chr17-73031331-2	chr17	73030840	73031840	+	898.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-76645.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	17.73	18.89	13.87	4.72	1.4	9.65	12.67	6.63	6.25
Merged-chr2-158258161-3	chr2	158257667	158258667	+	898.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177850)	promoter-TSS (NM_177850)	-74.0	NM_177850	329547.0	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	4.0	3.69	3.7	0.0	2.8	3.22	2.11	1.77	3.12
Merged-chr17-66710748-3	chr17	66710256	66711256	+	898.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 23 of 32)	intron (NM_001357625, intron 23 of 32)	-3700.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	15.45	14.28	25.9	16.19	14.46	30.54	34.85	39.35	23.11
Merged-chr4-118136244-3	chr4	118135742	118136742	+	898.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161823)	TTS (NM_001161823)	-1296.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	117.84	104.14	114.69	93.79	113.83	122.18	120.41	138.4	80.56
Merged-chr19-47135934-2	chr19	47135423	47136423	+	898.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133746, exon 2 of 3)	5' UTR (NM_133746, exon 2 of 3)	2371.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	12.59	18.89	22.2	18.89	20.99	26.53	44.36	33.16	29.98
Merged-chr17-17454836-3	chr17	17454361	17455361	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025681, intron 5 of 5)	intron (NM_025681, intron 5 of 5)	52175.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	9.72	4.61	5.55	2.7	3.73	4.82	4.22	3.1	1.25
Merged-chr17-33033295-3	chr17	33032775	33033775	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	106.0	NM_028543	73451.0	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	13.16	16.13	5.55	29.69	26.59	14.47	20.07	20.78	14.36
Merged-chr18-23888098-3	chr18	23887630	23888630	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-66558.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	12.01	5.07	0.0	89.06	61.58	49.83	13.73	15.48	10.62
Merged-chr17-26661921-3	chr17	26661414	26662414	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-14482.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	14.3	19.35	29.6	25.64	19.59	24.92	17.96	20.34	23.11
Merged-chr6-38901358-3	chr6	38900846	38901846	+	898.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17640.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	123.56	122.11	62.9	101.88	75.57	69.93	104.56	129.55	61.83
Merged-chr9-22155775-3	chr9	22155297	22156297	+	898.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	8.01	8.29	17.57	8.1	9.33	8.04	13.73	6.63	12.49
Merged-chr2-68873931-3	chr2	68873427	68874427	+	898.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	12486.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	33.75	22.58	37.0	33.06	34.52	44.21	54.92	65.0	41.84
Merged-chr1-130430072-3	chr1	130429592	130430592	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151525, intron 2 of 3)	RLTR13D5|LTR|ERVK	-7049.0	NM_001317361	13137.0	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	24.03	18.43	17.57	18.22	19.59	6.43	30.63	22.99	19.36
Merged-chr17-4996503-3	chr17	4996049	4997049	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	CpG-5917	1475.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	99.54	61.28	98.05	86.36	56.91	87.61	114.07	57.48	61.2
Merged-chr4-59035211-3	chr4	59034742	59035742	+	898.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025277)	promoter-TSS (NM_025277)	86.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	68.65	42.39	67.52	53.3	53.65	48.23	9.51	8.84	4.37
Merged-chr8-70793063-2	chr8	70792567	70793567	+	898.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199308)	promoter-TSS (NM_199308)	-634.0	NM_199308	546071.0	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	33.18	34.1	4.62	29.01	18.66	16.08	9.51	9.29	9.99
Merged-chr3-89378601-3	chr3	89378116	89379116	+	898.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	9055.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	18.88	9.68	12.02	9.45	9.33	16.88	13.73	16.36	12.49
Merged-chr12-56434757-3	chr12	56434258	56435258	+	898.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88864.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	8.01	9.22	5.55	7.42	7.46	5.63	13.73	9.73	11.24
Merged-chr4-121098113-3	chr4	121097610	121098610	+	898.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172700, exon 1 of 10)	5' UTR (NM_172700, exon 1 of 10)	133.0	NM_172700	230709.0	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	18.88	17.05	36.07	21.59	25.66	33.76	38.02	21.22	21.23
Merged-chr2-45194477-3	chr2	45193953	45194953	+	898.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77011.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	109.83	144.69	104.52	118.08	94.7	115.75	121.46	143.26	90.56
Merged-chr13-58274460-3	chr13	58273971	58274971	+	898.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019832)	promoter-TSS (NM_019832)	-283.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	21.17	11.06	11.1	22.27	9.8	23.31	22.18	16.36	5.0
Merged-chr2-119787523-3	chr2	119786998	119787998	+	898.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163701)	promoter-TSS (NM_001163701)	39.0	NM_177294	68925.0	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	23.45	27.19	16.65	28.34	29.39	22.51	29.57	17.24	23.73
Merged-chr12-3895430-3	chr12	3894935	3895935	+	898.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	3691.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	114.41	116.12	66.6	208.49	178.21	142.27	123.57	162.72	56.21
Merged-chr11-101959987-3	chr11	101959501	101960501	+	898.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045806, exon 4 of 4)	non-coding (NR_045806, exon 4 of 4)	7014.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	10.87	15.21	3.7	26.31	12.6	12.86	14.79	8.4	8.74
Merged-chr4-123921884-3	chr4	123921407	123922407	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017475, intron 3 of 6)	intron (NM_017475, intron 3 of 6)	4474.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	109.83	149.75	83.25	162.61	157.21	121.37	144.7	212.24	97.43
Merged-chr4-11990095-3	chr4	11989606	11990606	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	23532.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	5.72	4.15	12.95	8.1	6.53	3.22	5.28	4.86	7.49
Merged-chr10-31445914-3	chr10	31445399	31446399	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009413)	promoter-TSS (NM_009413)	59.0	NM_001359365	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	2.29	1.84	0.92	10.8	3.73	0.0	3.17	0.88	1.25
Merged-chr11-63806750-3	chr11	63806234	63807234	+	898.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	115550.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	15.45	14.28	9.25	3.37	5.13	3.22	12.67	11.05	9.37
Merged-chr1-164060253-2	chr1	164059745	164060745	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	-1831.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	5.15	6.91	7.4	3.37	5.6	1.61	7.39	6.19	14.99
Merged-chr10-37336974-1	chr10	37336474	37337474	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198048.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	168.76	222.1	108.22	151.81	152.55	162.37	132.02	141.05	99.92
Merged-chr17-87257681-1	chr17	87257181	87258181	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 3 of 4)	intron (NM_176808, intron 3 of 4)	8266.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	20.02	23.96	24.97	24.29	20.99	38.58	9.51	12.38	8.74
Merged-chr3-31435739-1	chr3	31435239	31436239	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125420.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.86	4.15	0.0	4.05	6.06	3.22	12.67	0.44	5.62
Merged-chr8-119834175-1	chr8	119833675	119834675	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	6404.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	12.59	6.45	16.65	11.47	5.13	20.9	11.62	4.42	5.62
Merged-chr1-74364348-1	chr1	74363848	74364848	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033345, exon 5 of 10)	exon (NM_001033345, exon 5 of 10)	2240.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	6.86	3.23	0.92	8.77	12.6	22.51	16.9	9.73	14.99
Merged-chr4-3607810-2	chr4	3607312	3608312	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	32933.0	NM_054089	116940.0	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	23.45	46.54	42.55	14.84	5.13	17.68	69.71	57.04	53.08
Merged-chr2-135562771-1	chr2	135562271	135563271	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A1|LTR|ERVL	20449.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.57	1.38	1.85	4.05	2.33	3.22	2.11	0.44	2.5
Merged-chr5-21784573-2	chr5	21784083	21785083	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011188)	promoter-TSS (NM_011188)	582.0	NM_009584	22791.0	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	51.48	39.17	29.6	45.88	23.79	35.37	63.37	41.12	28.1
Merged-chr1-157445098-2	chr1	157444576	157445576	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13492.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	31.46	41.93	29.6	56.0	51.32	73.95	47.53	52.62	26.85
Merged-chr3-97775898-3	chr3	97775384	97776384	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-7870.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	106.97	145.61	49.02	88.39	78.84	79.58	117.24	141.94	60.58
Merged-chr2-84482041-3	chr2	84481533	84482533	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18B_MM|LTR|ERVK	-5258.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	20.02	20.74	11.1	32.39	14.93	8.04	27.46	40.24	14.99
Merged-chr4-48322349-1	chr4	48321849	48322849	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010569, intron 3 of 16)	L2c|LINE|L2	42589.0	NM_001281977	16348.0	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	9.15	5.53	5.55	2.7	7.46	1.61	3.17	7.07	9.99
Merged-chr12-76472247-1	chr12	76471747	76472747	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27750.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	5.15	0.92	5.55	4.05	2.8	1.61	1.06	0.44	2.5
Merged-chr8-94373211-4	chr8	94372673	94373673	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-13256.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	22.31	47.92	17.57	43.86	21.93	24.11	23.24	22.55	25.61
Merged-chr9-62997970-1	chr9	62997470	62998470	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17091.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	5.72	13.36	20.35	17.54	14.93	20.09	5.28	11.05	30.6
Merged-chr17-5630411-1	chr17	5629911	5630911	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	MLT1F2|LTR|ERVL-MaLR	137811.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	13.73	7.37	11.1	4.05	6.06	11.25	6.34	3.1	12.49
Merged-chr19-24336623-1	chr19	24336123	24337123	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008846, intron 13 of 14)	intron (NM_008846, intron 13 of 14)	-56037.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	5.15	4.15	7.4	10.12	7.0	8.04	11.62	2.65	7.49
Merged-chr6-85068611-1	chr6	85068111	85069111	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	ID4|SINE|ID	902.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	10.3	3.23	12.95	9.45	10.73	11.25	9.51	3.98	6.25
Merged-chr7-64048516-4	chr7	64047992	64048992	+	898.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105343.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	62.93	61.75	49.95	67.47	75.57	89.22	77.1	55.71	28.73
Merged-chr8-79492047-1	chr8	79491547	79492547	+	898.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92579.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	12.59	7.37	7.4	5.4	7.0	11.25	6.34	3.54	3.75
Merged-chr7-27545228-3	chr7	27544720	27545720	+	897.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011116, exon 2 of 14)	5' UTR (NM_011116, exon 2 of 14)	7998.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	28.6	35.94	34.22	31.04	39.65	31.35	22.18	32.72	36.85
Merged-chr9-44196545-3	chr9	44196033	44197033	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	L1MB5|LINE|L1	37513.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	42.9	50.23	28.67	47.23	35.92	49.03	57.03	46.43	33.72
Merged-chr4-144971231-3	chr4	144970743	144971743	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78106.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	27.46	21.2	9.25	25.64	14.93	13.66	23.24	7.07	27.48
Merged-chr1-95598282-3	chr1	95597784	95598784	+	897.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	69310.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	25.74	30.41	24.97	27.66	23.33	25.72	23.24	25.65	14.99
Merged-chr5-125484191-4	chr5	125483717	125484717	+	897.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030210, intron 2 of 17)	B2_Mm1a|SINE|B2	8344.0	NM_030210	78894.0	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	12.01	6.45	12.02	4.05	3.73	12.06	13.73	6.63	12.49
Merged-chr2-79621578-3	chr2	79621094	79622094	+	897.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-13831.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	13.73	10.14	14.8	20.24	14.93	17.68	6.34	7.07	2.5
Merged-chr4-117253416-2	chr4	117252927	117253927	+	897.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029589, intron 2 of 3)	intron (NM_029589, intron 2 of 3)	1087.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	33.75	30.87	12.02	44.53	27.06	37.78	12.67	28.3	11.24
Merged-chr16-20316981-3	chr16	20316463	20317463	+	897.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183158, intron 2 of 8)	intron (NM_183158, intron 2 of 8)	8441.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	8.01	4.61	12.95	8.1	5.13	8.84	6.34	4.42	7.49
Merged-chr7-128728901-3	chr7	128728398	128729398	+	897.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	L1MD|LINE|L1	11531.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	29.17	23.04	33.3	20.24	37.32	36.97	34.85	32.72	25.61
Merged-chr15-59481979-1	chr15	59481479	59482479	+	897.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	107781.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	7.44	15.67	9.25	23.62	22.39	32.15	12.67	10.61	14.99
Merged-chr18-23894436-3	chr18	23893929	23894929	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162942)	TTS (NM_001162942)	-60259.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	24.6	22.12	18.5	76.92	35.45	65.11	69.71	69.86	44.34
Merged-chr3-97202118-3	chr3	97201619	97202619	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25245.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	5.72	8.29	1.85	3.37	6.53	6.43	5.28	2.21	8.74
Merged-chr6-134321626-1	chr6	134321126	134322126	+	897.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	MTC|LTR|ERVL-MaLR	-74703.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	13.16	7.37	0.0	11.47	5.6	11.25	4.22	3.98	2.5
Merged-chr17-67263087-3	chr17	67262591	67263591	+	897.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	91368.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.3	23.04	23.12	33.06	8.4	8.04	64.43	45.54	18.11
Merged-chr1-54896783-3	chr1	54896394	54897394	+	897.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	29493.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	42.33	47.0	21.27	47.9	48.52	36.97	33.8	31.39	31.23
Merged-chr2-26930596-3	chr2	26930110	26931110	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2901.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	25.17	28.57	20.35	30.36	16.33	17.68	22.18	26.97	14.36
Merged-chr9-64172856-3	chr9	64172363	64173363	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026507)	promoter-TSS (NM_026507)	68.0	NM_026507	68014.0	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	169.33	195.83	116.54	146.41	134.82	142.27	201.73	187.92	109.92
Merged-chr19-44384640-3	chr19	44384149	44385149	+	897.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	23060.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	59.49	34.1	37.92	58.7	38.25	55.46	71.82	45.1	29.98
Merged-chr4-135661517-1	chr4	135661017	135662017	+	897.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24940.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	2.29	2.3	13.87	1.35	1.4	0.8	2.11	0.88	2.5
Merged-chr2-44334225-2	chr2	44333730	44334730	+	897.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-268906.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	6.29	6.45	17.57	7.42	6.06	3.22	4.22	3.98	1.87
Merged-chr4-108406548-3	chr4	108406060	108407060	+	897.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024198, exon 1 of 3)	exon (NM_024198, exon 1 of 3)	153.0	NM_024198	67305.0	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	50.34	49.3	59.2	62.07	66.71	51.44	94.0	98.6	74.32
Merged-chr1-155470642-3	chr1	155470138	155471138	+	897.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-53194.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	13.16	6.91	5.55	20.24	12.6	8.04	14.79	15.03	7.49
Merged-chr2-84798773-3	chr2	84798237	84799237	+	897.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019949)	promoter-TSS (NM_019949)	-91.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	116.7	90.31	110.99	126.85	65.31	106.1	144.7	139.28	88.68
Merged-chr12-103443698-3	chr12	103443155	103444155	+	897.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281830)	promoter-TSS (NM_001281830)	25.0	NM_029803	76933.0	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	13.73	13.82	25.9	18.22	20.99	28.13	38.02	21.22	19.98
Merged-chr5-102010860-8	chr5	102010420	102011420	+	897.6979369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	59001.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	107.55	106.9	99.89	147.76	110.56	93.24	138.36	129.11	78.69
Merged-chr7-118652896-1	chr7	118652396	118653396	+	897.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 8 of 17)	MTC|LTR|ERVL-MaLR	19160.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	9.72	5.53	3.7	6.07	5.13	3.22	13.73	11.5	11.87
Merged-chr1-171561426-3	chr1	171560915	171561915	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2222.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	46.91	36.86	40.7	66.12	48.98	41.8	42.25	12.38	19.36
Merged-chr10-119047445-1	chr10	119046945	119047945	+	897.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 2 of 3)	MTC|LTR|ERVL-MaLR	3054.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.86	4.61	0.0	5.4	1.4	0.0	3.17	10.17	8.12
Merged-chr16-57424370-3	chr16	57423871	57424871	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	71094.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	58.92	35.02	41.62	64.77	45.25	31.35	36.97	32.28	14.99
Merged-chr4-150009556-1	chr4	150009056	150010056	+	897.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173371)	promoter-TSS (NM_173371)	-533.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	101.83	91.7	83.25	107.95	68.58	109.32	87.66	89.76	60.58
Merged-chr11-116643450-3	chr11	116642964	116643964	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10849.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	9.72	1.38	0.0	4.05	1.87	3.22	3.17	2.21	0.0
Merged-chr2-122408636-3	chr2	122408113	122409113	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-32207.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	74.94	129.48	77.7	68.15	96.1	58.68	81.33	91.53	76.19
Merged-chr13-111936662-1	chr13	111936162	111937162	+	897.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LFSINE_Vert|SINE|tRNA	68726.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	127.0	117.04	98.05	130.9	104.5	98.06	133.08	115.85	56.21
Merged-chr10-67966358-2	chr10	67965850	67966850	+	897.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152797, intron 2 of 2)	intron (NR_152797, intron 2 of 2)	7358.0	NR_152797	75067.0	Mm.416933	NR_152797	ENSMUSG00000112899	4930521O17Rik	-	RIKEN cDNA 4930521O17 gene	ncRNA	3.43	4.15	7.4	7.42	5.6	6.43	26.4	15.92	18.74
Merged-chr4-123340394-2	chr4	123339893	123340893	+	897.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007558, intron 1 of 6)	intron (NM_007558, intron 1 of 6)	2859.0	NM_001256019	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	3.43	2.3	0.0	3.37	1.4	0.0	0.0	0.44	3.75
Merged-chr1-34480993-3	chr1	34480485	34481485	+	897.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17427.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	52.63	64.97	61.05	42.51	32.66	48.23	59.15	70.75	55.58
Merged-chrX-166757295-3	chrX	166756791	166757791	+	897.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	95266.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	6.29	6.45	16.65	10.8	5.6	8.84	15.84	5.75	6.25
Merged-chr10-125966590-2	chr10	125966056	125967056	+	897.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177152, exon 1 of 19)	exon (NM_177152, exon 1 of 19)	337.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	13.16	4.61	1.85	22.94	6.53	16.08	14.79	7.52	12.49
Merged-chr1-74250317-3	chr1	74249828	74250828	+	897.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 4 of 10)	intron (NM_001357387, intron 4 of 10)	13811.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	100.68	100.45	65.67	72.19	53.65	85.2	64.43	96.83	39.35
Merged-chr12-71831668-3	chr12	71831146	71832146	+	897.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	CpG	578.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	80.09	87.55	58.27	76.92	74.17	37.78	98.23	85.34	30.6
Merged-chr12-17554317-3	chr12	17553831	17554831	+	897.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9458.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	5.15	2.3	0.0	4.72	4.2	8.04	4.22	2.21	1.25
Merged-chr15-10869193-5	chr15	10868673	10869673	+	897.576172	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40122.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	6.29	6.91	0.0	3.37	6.53	3.22	8.45	5.31	6.25
Merged-chr11-97546089-3	chr11	97545595	97546595	+	897.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	(CA)n|Simple_repeat|Simple_repeat	29031.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	8.01	5.07	7.4	6.75	3.73	8.04	33.8	20.34	8.74
Merged-chr7-90138556-3	chr7	90138060	90139060	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	8347.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	66.93	84.32	51.8	82.99	63.91	59.48	71.82	67.21	42.47
Merged-chr9-100506873-3	chr9	100506374	100507374	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-18.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	168.18	191.23	98.97	124.82	118.49	117.35	156.32	155.64	70.57
Merged-chr6-88084665-4	chr6	88084216	88085216	+	897.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133933, exon 1 of 10)	exon (NM_133933, exon 1 of 10)	243.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	173.9	147.91	73.07	147.09	151.15	121.37	100.34	112.75	38.1
Merged-chr1-4907225-3	chr1	4906773	4907773	+	897.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48945.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	11.44	9.68	9.25	9.45	19.13	17.68	12.67	6.19	6.25
Merged-chr17-28710008-3	chr17	28709410	28710410	+	897.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	17342.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	94.39	111.97	81.4	80.97	73.71	93.24	58.09	78.26	56.83
Merged-chr13-24633320-3	chr13	24632793	24633793	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-5355.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	5.72	7.83	0.0	8.77	3.73	1.61	4.22	3.54	4.37
Merged-chr19-12469004-3	chr19	12468499	12469499	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	8220.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	14.87	20.27	35.15	15.52	9.33	45.01	4.22	3.54	21.23
Merged-chr11-116683929-1	chr11	116683429	116684429	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009180, intron 5 of 8)	intron (NM_009180, intron 5 of 8)	9332.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	43.48	41.01	63.82	56.68	49.92	51.44	30.63	26.09	25.61
Merged-chr1-36134758-2	chr1	36134260	36135260	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	9553.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	18.88	18.43	5.55	45.21	37.32	45.82	29.57	41.56	30.6
Merged-chr19-41384726-2	chr19	41384204	41385204	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	366.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	345.52	399.04	277.49	346.8	367.14	271.68	426.7	531.04	202.35
Merged-chr9-32159409-2	chr9	32158908	32159908	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 4 of 21)	intron (NM_001195632, intron 4 of 21)	43272.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	4.58	3.23	1.85	8.77	3.73	0.0	2.11	4.42	1.25
Merged-chr1-87851490-1	chr1	87850990	87851990	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1797.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	23.45	14.75	11.1	20.92	11.66	37.78	10.56	9.29	15.61
Merged-chr6-135250827-1	chr6	135250327	135251327	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-2943.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.29	3.69	1.85	5.4	8.4	8.84	1.06	0.88	2.5
Merged-chr13-38528900-1	chr13	38528400	38529400	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145367)	promoter-TSS (NM_145367)	-76.0	NM_001289598	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	26.31	17.51	19.42	33.06	12.13	34.56	22.18	7.52	16.24
Merged-chr2-22775059-1	chr2	22774559	22775559	+	897.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	732.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	142.44	187.54	119.32	143.04	125.02	105.3	192.23	135.75	112.42
Merged-chr7-128234986-3	chr7	128234485	128235485	+	897.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177001, exon 1 of 1)	3' UTR (NM_177001, exon 1 of 1)	-2372.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	10.3	5.53	12.95	16.87	5.6	18.49	22.18	11.94	8.74
Merged-chr8-126820768-1	chr8	126820268	126821268	+	897.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28252.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	16.02	17.51	29.6	25.64	7.0	22.51	11.62	6.19	11.24
Merged-chr7-25848204-3	chr7	25847689	25848689	+	897.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31659.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	2.29	7.37	11.1	4.05	9.8	12.86	15.84	7.96	11.24
Merged-chr5-138740331-2	chr5	138739844	138740844	+	897.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14737.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	7.44	3.69	3.7	9.45	5.13	19.29	4.22	6.19	8.74
Merged-chr15-54919350-3	chr15	54918853	54919853	+	897.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285994, intron 2 of 25)	intron (NM_001285994, intron 2 of 25)	793.0	NM_015744	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	13.16	13.36	1.85	10.8	3.27	2.41	11.62	9.29	7.49
Merged-chr14-79485737-3	chr14	79485236	79486236	+	897.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	L1M3|LINE|L1	-4468.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	24.6	17.05	14.8	23.62	8.4	6.43	10.56	14.59	6.87
Merged-chr14-73123969-2	chr14	73123465	73124465	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18545.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	41.19	35.02	37.0	41.83	41.99	43.4	29.57	24.76	38.1
Merged-chr3-90255044-2	chr3	90254548	90255548	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357152, intron 1 of 9)	intron (NM_001357152, intron 1 of 9)	1190.0	NM_001357152	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	53.2	35.94	46.25	43.86	36.85	68.32	63.37	40.24	30.6
Merged-chr6-146410395-2	chr6	146409882	146410882	+	897.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 9 of 56)	intron (NM_019923, intron 9 of 56)	91841.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	20.02	23.5	22.2	18.22	25.19	36.17	44.36	36.7	18.74
Merged-chr10-17698098-3	chr10	17697600	17698600	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.86	6.45	1.85	8.1	5.13	9.65	6.34	3.1	5.0
Merged-chr7-118485130-3	chr7	118484624	118485624	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033380)	TTS (NM_001033380)	6851.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	135.0	120.26	110.07	120.77	87.7	110.92	105.62	104.35	85.56
Merged-chr18-30530314-3	chr18	30529797	30530797	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	257432.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	4.0	1.84	0.92	2.7	6.06	4.82	8.45	3.98	6.25
Merged-chr2-14336036-1	chr2	14335536	14336536	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52362.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	10.87	3.69	14.8	4.05	4.67	8.04	7.39	2.65	7.49
Merged-chr2-79428832-3	chr2	79428283	79429283	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001048176, exon 1 of 13)	exon (NM_001048176, exon 1 of 13)	205.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	9.15	6.91	0.0	8.1	1.4	5.63	7.39	4.42	9.99
Merged-chr18-77822049-1	chr18	77821549	77822549	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25659.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	26.31	15.21	14.8	28.34	9.33	15.27	7.39	7.07	6.87
Merged-chr2-117172593-2	chr2	117172079	117173079	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277256, exon 5 of 5)	3' UTR (NM_001277256, exon 5 of 5)	-12548.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	34.9	30.87	17.57	31.04	14.46	20.09	33.8	25.2	23.11
Merged-chr10-63164779-1	chr10	63164279	63165279	+	897.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 4 of 19)	intron (NM_182992, intron 4 of 19)	39173.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	20.59	15.67	22.2	25.64	29.39	53.05	12.67	13.71	18.74
Merged-chr5-21351859-3	chr5	21351337	21352337	+	897.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	MusHAL1|LINE|L1	-20836.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.86	11.52	13.87	16.19	9.33	6.43	16.9	11.5	21.23
Merged-chr10-39613192-3	chr10	39612727	39613727	+	897.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134000, exon 1 of 9)	5' UTR (NM_134000, exon 1 of 9)	293.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	21.74	27.19	12.95	26.31	24.26	14.47	28.52	16.36	11.24
Merged-chr1-193859031-2	chr1	193858537	193859537	+	897.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-351507.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	4.0	8.75	7.4	6.75	5.6	9.65	3.17	6.63	5.62
Merged-chr17-5728350-3	chr17	5727867	5728867	+	897.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	MTC|LTR|ERVL-MaLR	-70290.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	25.74	23.5	31.45	23.62	14.0	18.49	16.9	15.92	14.36
Merged-chr11-49848586-3	chr11	49848081	49849081	+	897.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	1830.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	37.18	82.02	98.05	36.43	45.25	65.11	88.72	98.16	86.81
Merged-chr10-51824105-2	chr10	51823607	51824607	+	897.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-66913.0	NR_045158	71090.0	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	14.87	11.98	16.65	6.07	9.8	4.82	8.45	11.94	9.99
Merged-chr19-34751257-1	chr19	34750757	34751757	+	897.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4146.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.0	5.07	2.77	4.72	7.0	4.02	3.17	3.98	6.25
Merged-chr11-3166697-4	chr11	3166186	3167186	+	897.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 7 of 32)	B3|SINE|B2	26777.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	77.8	86.17	99.89	89.06	104.03	110.92	13.73	7.52	136.77
Merged-chr9-90198653-3	chr9	90198173	90199173	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35695.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	9.72	10.14	11.1	9.45	2.8	4.02	20.07	10.17	5.62
Merged-chr19-6268303-3	chr19	6267807	6268807	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3463.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	57.78	54.83	28.67	68.15	30.79	52.25	76.05	51.29	53.71
Merged-chr11-75738092-3	chr11	75737582	75738582	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	5195.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	31.46	41.93	35.15	33.06	23.79	20.09	30.63	37.14	21.86
Merged-chr4-108369803-3	chr4	108369308	108370308	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099303, intron 2 of 2)	B3|SINE|B2	13847.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	54.92	64.05	27.75	77.59	56.91	64.3	87.66	94.18	49.34
Merged-chr7-127921722-3	chr7	127921213	127922213	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360699, intron 5 of 10)	intron (NM_001360699, intron 5 of 10)	8400.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	56.06	58.98	38.85	149.79	106.83	163.97	51.75	95.07	59.95
Merged-chr11-119034356-3	chr11	119033854	119034854	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	6559.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	15.45	4.15	5.55	10.8	6.06	4.02	3.17	3.54	2.5
Merged-chr19-46979696-3	chr19	46979101	46980101	+	897.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-10034.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	40.62	15.21	0.0	68.82	38.25	27.33	11.62	19.46	5.0
Merged-chr12-82470765-3	chr12	82470258	82471258	+	897.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-146167.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	22.31	25.34	13.87	14.17	13.53	8.84	17.96	15.92	4.37
Merged-chrX-96314317-3	chrX	96313822	96314822	+	897.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172931, intron 9 of 10)	intron (NM_172931, intron 9 of 10)	-20884.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	24.6	58.98	36.07	42.51	26.59	47.42	43.3	33.16	25.61
Merged-chr6-128065521-1	chr6	128065021	128066021	+	897.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356301, intron 1 of 7)	intron (NM_001356301, intron 1 of 7)	78057.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	3.43	1.84	3.7	1.35	1.4	1.61	3.17	4.86	5.0
Merged-chr13-24407014-3	chr13	24406523	24407523	+	897.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 2 of 16)	MER21-int|LTR|ERVL	-8099.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.58	6.91	3.7	6.75	6.06	4.02	7.39	5.31	2.5
Merged-chr11-119396201-2	chr11	119395701	119396701	+	897.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	5729.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	9.72	11.52	9.25	27.66	31.72	40.99	47.53	46.43	25.61
Merged-chr11-3142625-3	chr11	3142147	3143147	+	897.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 20 of 32)	intron (NM_030207, intron 20 of 32)	18626.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	58.35	57.14	109.14	66.8	91.44	106.9	6.34	2.21	146.14
Merged-chr3-105710184-1	chr3	105709684	105710684	+	897.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4726.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	9.15	7.83	5.55	35.09	14.93	16.08	7.39	11.94	8.74
Merged-chr8-115706909-2	chr8	115706413	115707413	+	897.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025577)	promoter-TSS (NM_001025577)	-19.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	62.35	94.46	148.92	74.22	78.37	122.18	87.66	91.53	95.55
Merged-chr7-96856100-2	chr7	96855597	96856597	+	897.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 24 of 32)	intron (NM_011858, intron 24 of 32)	-54548.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	25.74	25.34	15.72	34.41	21.46	21.7	12.67	7.96	6.25
Merged-chr11-5542869-3	chr11	5542371	5543371	+	897.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134033)	promoter-TSS (NM_134033)	-654.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	37.76	42.85	44.4	40.48	22.39	27.33	57.03	81.8	27.48
Merged-chr9-99353128-3	chr9	99352618	99353618	+	897.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177775, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	5412.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	12.01	2.76	1.85	11.47	4.2	3.22	7.39	1.77	3.12
Merged-chr10-117281692-3	chr10	117281203	117282203	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017372, intron 1 of 3)	intron (NM_017372, intron 1 of 3)	569.0	NM_017372	17105.0	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	202.51	220.25	137.82	240.87	214.59	162.37	205.96	207.38	98.05
Merged-chr2-26380642-3	chr2	26380124	26381124	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172339)	promoter-TSS (NM_172339)	29.0	NM_172339	227644.0	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	33.75	20.27	21.27	20.92	25.19	22.51	28.52	21.67	14.99
Merged-chr1-183294820-3	chr1	183294296	183295296	+	897.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151660, exon 2 of 13)	non-coding (NR_151660, exon 2 of 13)	-2264.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	15.45	8.29	21.27	10.8	6.53	20.09	13.73	16.36	5.0
Merged-chr10-86883422-3	chr10	86882870	86883870	+	897.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	B1_Mm|SINE|Alu	104365.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	83.52	95.84	70.3	76.92	79.31	91.63	115.12	141.94	68.7
Merged-chr13-93861479-3	chr13	93860996	93861996	+	897.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	70719.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	4.58	3.23	4.62	10.12	0.93	3.22	0.0	1.33	1.25
Merged-chr2-166457528-3	chr2	166457011	166458011	+	897.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015558, intron 2 of 2)	MTEa|LTR|ERVL-MaLR	10060.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	34.9	30.41	25.9	38.46	16.33	31.35	26.4	22.11	26.23
Merged-chr9-99436552-3	chr9	99436040	99437040	+	897.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	172.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	9.15	5.07	14.8	10.8	8.4	3.22	7.39	4.86	9.99
Merged-chr7-80402239-3	chr7	80401738	80402738	+	897.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081454, intron 1 of 15)	CpG	574.0	NM_011046	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	156.17	116.58	123.02	136.97	83.04	141.47	185.89	86.66	87.43
Merged-chr5-140514121-3	chr5	140513615	140514615	+	897.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	B4A|SINE|B4	8506.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	5.15	6.45	6.47	12.14	4.2	12.06	14.79	5.31	3.75
Merged-chr2-133467939-3	chr2	133467432	133468432	+	897.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84227.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	21.17	20.27	11.1	29.01	27.52	38.58	19.01	27.86	23.11
Merged-chr8-41394575-1	chr8	41394075	41395075	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-19878.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	17.73	12.44	16.65	10.12	3.27	15.27	6.34	7.96	1.25
Merged-chr18-65497618-2	chr18	65497111	65498111	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	66614.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	72.08	82.02	104.52	86.36	54.11	94.04	20.07	13.71	16.24
Merged-chr6-146207772-1	chr6	146207272	146208272	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	273650.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	6.86	5.53	5.55	5.4	4.67	3.22	9.51	6.63	0.0
Merged-chr13-24781326-3	chr13	24780840	24781840	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19403.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	10.87	17.05	13.87	8.1	7.0	14.47	19.01	11.05	8.74
Merged-chr15-39778287-2	chr15	39777785	39778785	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022722, intron 9 of 9)	intron (NM_022722, intron 9 of 9)	-18760.0	NR_045788	100503072.0	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	-	predicted gene 16291	ncRNA	4.58	4.15	0.0	6.75	3.27	4.02	14.79	7.96	6.25
Merged-chr4-109059624-1	chr4	109059124	109060124	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146150, intron 27 of 30)	intron (NM_146150, intron 27 of 30)	41969.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	14.87	7.37	13.87	22.27	19.59	36.17	15.84	5.31	11.24
Merged-chr4-108623882-1	chr4	108623382	108624382	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177045, intron 3 of 24)	intron (NM_177045, intron 3 of 24)	3926.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	15.45	10.6	12.02	5.4	2.8	3.22	4.22	3.1	6.25
Merged-chr12-4190725-1	chr12	4190225	4191225	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	43240.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	38.9	55.29	47.17	46.56	55.98	62.7	27.46	29.63	41.22
Merged-chr9-13748293-1	chr9	13747793	13748793	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023858)	promoter-TSS (NM_023858)	-888.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	73.22	117.96	58.27	62.07	78.84	72.34	90.83	132.21	66.82
Merged-chr2-35680501-2	chr2	35680002	35681002	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290637, intron 3 of 16)	intron (NM_001290637, intron 3 of 16)	-11492.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.15	8.29	20.35	15.52	8.86	8.04	5.28	3.54	5.0
Merged-chr18-46273752-3	chr18	46273242	46274242	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172627, intron 2 of 8)	intron (NM_172627, intron 2 of 8)	7108.0	NM_172627	225467.0	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	14.87	37.32	20.35	22.94	19.13	18.49	50.7	65.44	24.98
Merged-chr2-171630398-1	chr2	171629898	171630898	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	332401.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	7.44	5.07	1.85	5.4	4.67	4.82	0.0	0.44	1.25
Merged-chr8-92855896-3	chr8	92855426	92856426	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	593.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	177.91	199.98	237.71	167.33	151.15	229.88	248.2	258.23	155.51
Merged-chr17-34279293-1	chr17	34278793	34279793	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	8478.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	13.73	2.3	2.77	6.75	4.2	0.0	6.34	1.77	5.0
Merged-chr7-83852261-2	chr7	83851789	83852789	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32052.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	13.73	15.21	24.05	11.47	16.33	21.7	19.01	19.01	8.12
Merged-chr18-79109995-1	chr18	79109495	79110495	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-604.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	1.14	2.76	5.55	9.45	5.13	1.61	4.22	0.88	0.0
Merged-chr2-118490831-3	chr2	118490319	118491319	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11123.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	27.46	15.21	18.5	29.01	27.52	17.68	65.48	45.99	44.34
Merged-chrX-102188883-2	chrX	102188404	102189404	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009094, intron 1 of 6)	intron (NM_009094, intron 1 of 6)	487.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	44.62	45.62	23.12	37.11	38.72	40.19	40.14	55.71	26.23
Merged-chr18-18115560-1	chr18	18115060	18116060	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534570.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	2.86	3.23	0.92	3.37	3.27	0.0	4.22	3.54	2.5
Merged-chr4-88763574-3	chr4	88763085	88764085	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	2811.0	NM_001085531	545645.0	Mm.489553	NM_001085531	ENSMUSG00000100505	Gm13283	EG545645	predicted gene 13283	protein-coding	16.02	8.75	3.7	0.0	0.47	0.0	9.51	13.27	6.25
Merged-chr16-57605584-2	chr16	57605073	57606073	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	1294.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	9.15	5.99	5.55	0.67	6.06	3.22	5.28	15.92	4.37
Merged-chr15-77343615-1	chr15	77343115	77344115	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36562.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	1.72	1.38	1.85	0.67	1.4	1.61	2.11	1.33	3.75
Merged-chr10-44494686-1	chr10	44494186	44495186	+	897.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35938.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.3	4.61	5.55	7.42	10.73	8.84	9.51	4.42	6.25
Merged-chrX-146947200-1	chrX	146946700	146947700	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15313.0	NM_008312	15560.0	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	6.29	14.28	3.7	6.75	10.73	9.65	2.11	5.31	1.87
Merged-chr1-161359553-1	chr1	161359053	161360053	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35885.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	13.16	13.36	8.32	32.39	16.79	12.06	25.35	18.57	3.75
Merged-chr11-101646271-2	chr11	101645795	101646795	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18346.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	18.88	14.28	21.27	159.91	129.69	132.63	235.53	189.69	111.79
Merged-chr9-40617869-1	chr9	40617369	40618369	+	897.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-68095.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	2.29	5.99	1.85	4.72	4.67	1.61	1.06	0.44	1.25
Merged-chr13-102887585-1	chr13	102887085	102888085	+	897.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	RSINE1|SINE|B4	127330.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	12.01	17.97	20.35	6.75	2.8	12.86	6.34	11.5	8.74
Merged-chr9-106891417-2	chr9	106890908	106891908	+	897.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029103, intron 1 of 3)	intron (NM_029103, intron 1 of 3)	530.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	245.41	189.84	99.89	180.15	168.41	140.66	181.66	172.45	124.28
Merged-chr2-66124369-4	chr2	66123787	66124787	+	896.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 1 of 10)	CpG	506.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	36.61	17.05	33.3	43.86	41.05	22.51	35.91	23.43	14.99
Merged-chr4-124711079-3	chr4	124710595	124711595	+	896.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3766.0	NM_029157	75062.0	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	29.17	32.72	26.82	23.62	20.99	37.78	17.96	26.97	24.36
Merged-chr4-141138007-3	chr4	141137494	141138494	+	896.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	intron (NM_001277195, intron 1 of 3)	1802.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	101.25	121.19	67.52	91.09	82.11	93.24	97.17	115.85	73.69
Merged-chr5-146288248-3	chr5	146287786	146288786	+	896.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359991, intron 6 of 12)	intron (NM_001359991, intron 6 of 12)	57036.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	14.3	18.89	18.5	22.94	22.39	28.13	17.96	16.8	14.99
Merged-chr11-63098844-2	chr11	63098332	63099332	+	896.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30150.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	1.14	2.3	2.77	7.42	5.6	3.22	11.62	5.75	6.25
Merged-chr2-91950898-3	chr2	91950448	91951448	+	896.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166597)	promoter-TSS (NM_001166597)	-600.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	125.85	107.82	86.95	73.54	80.24	73.14	54.92	68.54	58.08
Merged-chr13-107056518-3	chr13	107056019	107057019	+	896.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	33949.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	16.02	13.36	5.55	11.47	4.67	4.82	11.62	19.9	6.87
Merged-chr18-9505204-3	chr18	9504655	9505655	+	896.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55001.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	46.91	31.33	11.1	82.99	64.38	17.68	61.26	54.83	11.24
Merged-chrX-106047412-3	chrX	106046935	106047935	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx8b|LINE|L1	20211.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	44.62	51.15	33.3	50.6	37.79	38.58	45.42	35.82	32.48
Merged-chr13-44718443-3	chr13	44717948	44718948	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12326.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	17.73	11.06	9.25	4.72	9.8	9.65	20.07	19.01	8.74
Merged-chr17-34078271-1	chr17	34077771	34078771	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14108.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	66.36	58.52	65.67	15.52	7.93	3.22	5.28	11.94	5.62
Merged-chr12-112895970-3	chr12	112895473	112896473	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	24568.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	128.14	120.26	90.65	56.0	49.92	28.94	39.08	34.05	11.87
Merged-chr7-88097916-3	chr7	88097412	88098412	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 9 of 9)	intron (NM_001081414, intron 9 of 9)	-180173.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.01	6.45	2.77	6.07	3.73	6.43	9.51	1.77	1.25
Merged-chr1-135722302-3	chr1	135721781	135722781	+	896.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	B4A|SINE|B4	2218.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	28.6	15.21	12.95	3.37	1.87	0.8	17.96	2.65	4.37
Merged-chr2-13574975-3	chr2	13574452	13575452	+	896.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011701, exon 1 of 9)	exon (NM_011701, exon 1 of 9)	641.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	67.5	86.17	67.52	59.38	57.85	50.64	35.91	37.58	22.48
Merged-chr13-104132677-3	chr13	104132087	104133087	+	896.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144838, intron 8 of 10)	intron (NM_144838, intron 8 of 10)	22846.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	29.75	19.81	24.05	32.39	27.99	53.05	51.75	54.39	27.48
Merged-chr3-88337573-1	chr3	88337073	88338073	+	896.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	1313.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	11.44	10.14	9.25	34.41	16.33	30.54	69.71	59.25	36.22
Merged-chr1-147010838-3	chr1	147010341	147011341	+	896.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	513154.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	21.17	11.52	6.47	24.96	10.26	19.29	15.84	19.46	9.99
Merged-chr1-157141263-3	chr1	157140779	157141779	+	896.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 17 of 17)	intron (NM_177644, intron 17 of 17)	-32599.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	62.35	52.07	46.25	157.88	160.95	108.51	85.55	75.17	36.22
Merged-chr9-89179600-3	chr9	89179121	89180121	+	896.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19652.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	9.72	5.07	4.62	7.42	1.87	3.22	2.11	0.88	0.62
Merged-chr14-55735305-3	chr14	55734799	55735799	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	10385.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	187.06	196.75	108.22	215.23	145.55	159.95	201.73	256.46	122.41
Merged-chr10-122807261-3	chr10	122806758	122807758	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	127943.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	13.16	11.06	7.4	12.82	10.26	14.47	8.45	11.05	6.87
Merged-chr11-113649527-4	chr11	113649033	113650033	+	896.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013581)	promoter-TSS (NM_013581)	4.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	43.48	35.48	61.97	56.0	68.58	69.13	72.88	47.31	40.59
Merged-chr3-69044909-3	chr3	69044443	69045443	+	896.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025863)	promoter-TSS (NM_025863)	-201.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	7.44	1.84	10.17	10.12	5.13	4.02	9.51	3.54	0.0
Merged-chr2-181599022-3	chr2	181598527	181599527	+	896.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172676, exon 1 of 5)	5' UTR (NM_172676, exon 1 of 5)	120.0	NM_172676	229011.0	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	27.46	11.52	3.7	20.92	17.26	33.76	17.96	6.19	1.25
Merged-chr10-67049024-3	chr10	67048517	67049517	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	43942.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	18.88	22.12	21.27	33.74	20.06	24.92	35.91	25.2	26.85
Merged-chr12-38767340-3	chr12	38766843	38767843	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11C_MM|LTR|ERVK	-12739.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.0	4.61	1.85	4.72	0.93	6.43	3.17	4.42	5.0
Merged-chrX-35889561-3	chrX	35889065	35890065	+	896.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	733.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	17.73	27.19	36.07	22.27	23.33	38.58	29.57	26.97	30.6
Merged-chr11-3191724-10	chr11	3191252	3192252	+	896.707642	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 1 of 32)	RCHARR1|DNA|hAT-Charlie	1711.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	48.62	74.19	96.2	83.66	99.37	104.49	51.75	54.39	101.8
Merged-chr3-33844285-3	chr3	33843751	33844751	+	896.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026222)	promoter-TSS (NM_026222)	59.0	NM_026222	51938.0	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	10.3	4.61	3.7	8.1	7.0	14.47	5.28	3.54	5.0
Merged-chr1-106395682-3	chr1	106395201	106396201	+	896.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150930.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.72	5.53	2.77	4.72	1.87	1.61	4.22	2.21	0.0
Merged-chr3-157297387-1	chr3	157296887	157297887	+	896.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039094, intron 6 of 6)	intron (NM_001039094, intron 6 of 6)	236703.0	NR_152231	381498.0	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0.0	1.84	1.85	4.72	2.33	4.82	9.51	7.07	1.25
Merged-chr7-101883282-1	chr7	101882782	101883782	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1957.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	25.17	31.79	18.5	41.83	19.13	32.15	33.8	41.12	23.73
Merged-chr6-24707865-1	chr6	24707365	24708365	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25380.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	27.46	44.24	12.95	69.5	78.37	68.32	21.12	22.99	11.24
Merged-chr11-44380802-3	chr11	44380250	44381250	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-19313.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	22.31	20.27	11.1	23.62	10.73	9.65	24.29	19.46	15.61
Merged-chr1-150372124-2	chr1	150371617	150372617	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 12 of 14)	exon (NM_145511, exon 12 of 14)	-20721.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	13.16	17.51	14.8	13.49	14.93	19.29	8.45	15.48	8.74
Merged-chr7-96554443-2	chr7	96553950	96554950	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	-212486.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	10.87	5.99	9.25	8.1	8.4	9.65	0.0	0.0	2.5
Merged-chr8-61917828-1	chr8	61917328	61918328	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR18B|LTR|ERVK	-10259.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	15.45	14.28	7.4	13.49	23.79	18.49	23.24	23.43	13.74
Merged-chr17-57231710-3	chr17	57231197	57232197	+	896.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3561.0	NM_009778	12266.0	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	10.3	4.61	12.02	4.05	3.73	6.43	3.17	10.17	9.37
Merged-chr4-54481888-1	chr4	54481388	54482388	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-466057.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.86	6.45	0.0	4.05	11.2	5.63	2.11	0.44	0.0
Merged-chrX-102481300-1	chrX	102480800	102481800	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313742, intron 4 of 7)	intron (NM_001313742, intron 4 of 7)	23858.0	NM_001313742	70315.0	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	13.16	12.44	6.47	12.82	9.8	3.22	10.56	9.29	2.5
Merged-chr6-146192094-1	chr6	146191594	146192594	+	896.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 46 of 56)	intron (NM_019923, intron 46 of 56)	257972.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	9.15	3.23	5.55	5.4	5.13	8.04	1.06	0.44	1.25
Merged-chr11-95852487-2	chr11	95852015	95853015	+	896.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6302.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	38.33	23.04	15.72	74.22	25.19	73.14	97.17	79.15	39.97
Merged-chr17-78201458-3	chr17	78200890	78201890	+	896.634949	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 1 of 16)	CpG	1142.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	21.17	14.28	16.65	14.17	8.86	8.04	14.79	8.4	6.87
Merged-chr3-52257982-3	chr3	52257487	52258487	+	896.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10350.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	7.44	1.84	2.77	6.07	5.13	3.22	6.34	0.44	3.12
Merged-chr1-180303780-3	chr1	180303247	180304247	+	896.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26729.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	56.63	41.47	42.55	34.41	18.66	40.99	59.15	38.03	55.58
Merged-chr2-71103480-1	chr2	71102980	71103980	+	896.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14574.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	5.15	3.69	7.4	18.22	4.2	14.47	12.67	6.19	3.75
Merged-chr7-81862140-1	chr7	81861640	81862640	+	896.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291282)	promoter-TSS (NM_001291282)	-547.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	88.67	86.17	78.62	74.22	70.91	78.77	42.25	48.64	47.46
Merged-chr3-79982554-3	chr3	79982049	79983049	+	896.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	96619.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	6.86	11.98	3.7	8.1	3.73	9.65	6.34	3.54	1.87
Merged-chr9-107291095-2	chr9	107290599	107291599	+	896.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_178907	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	10.3	2.76	3.7	5.4	3.73	3.22	4.22	3.98	1.87
Merged-chr15-55121227-3	chr15	55120736	55121736	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7654.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	21.17	17.05	12.95	24.29	14.93	17.68	12.67	24.76	13.74
Merged-chr8-35433967-3	chr8	35433475	35434475	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58234.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	6.29	6.45	3.7	16.19	4.67	3.22	5.28	3.1	1.25
Merged-chr5-121450127-3	chr5	121449663	121450663	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026129, intron 1 of 2)	intron (NM_026129, intron 1 of 2)	2311.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	65.79	56.22	38.85	47.23	32.66	40.19	48.58	40.68	37.47
Merged-chr10-21696875-3	chr10	21696372	21697372	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6027.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	6.86	3.69	1.85	6.75	6.06	14.47	7.39	3.54	0.0
Merged-chr9-116160233-3	chr9	116159731	116160731	+	896.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	15132.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	38.33	48.38	59.2	55.33	30.32	44.21	26.4	19.46	13.74
Merged-chr5-62763329-3	chr5	62762830	62763830	+	896.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	2847.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	100.11	129.48	78.62	109.3	90.5	69.93	106.67	132.65	50.59
Merged-chr10-17655791-4	chr10	17655393	17656393	+	896.5208130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67335.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	26.89	26.73	9.25	26.31	28.46	14.47	27.46	36.7	20.61
Merged-chr7-120206178-3	chr7	120205663	120206663	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 1 of 30)	intron (NM_026458, intron 1 of 30)	2199.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	21.74	26.26	20.35	89.74	98.43	91.63	77.1	71.19	48.71
Merged-chr11-116019704-3	chr11	116019192	116020192	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4812.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	42.33	11.52	9.25	33.74	19.59	12.06	11.62	7.07	5.0
Merged-chr14-20885283-3	chr14	20884772	20885772	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44126.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	14.87	19.35	20.35	28.34	28.92	33.76	27.46	19.01	16.86
Merged-chr6-51532825-3	chr6	51532330	51533330	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	8570.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	33.18	57.6	35.15	35.09	42.45	53.85	57.03	45.1	40.59
Merged-chr15-89074185-3	chr15	89073688	89074688	+	896.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040417, exon 2 of 4)	non-coding (NR_040417, exon 2 of 4)	1666.0	NR_040417	69120.0	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	9.15	12.44	15.72	6.07	5.6	13.66	13.73	10.17	13.74
Merged-chr4-155491691-3	chr4	155491191	155492191	+	896.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160017, intron 1 of 10)	CpG	330.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	503.41	299.05	406.05	424.4	226.72	274.09	352.77	225.51	199.22
Merged-chr2-58533541-3	chr2	58533009	58534009	+	896.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	27901.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	22.31	29.03	24.97	28.34	25.66	24.11	25.35	30.51	19.98
Merged-chr5-123133612-3	chr5	123133101	123134101	+	896.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-972.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	14.3	14.28	12.95	27.66	6.53	17.68	11.62	9.29	4.37
Merged-chr10-82647389-2	chr10	82646863	82647863	+	896.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011561, exon 8 of 10)	exon (NM_011561, exon 8 of 10)	17521.0	NR_037190	624784.0	Mm.284252	NR_037190		Gm9855	-	thymine DNA glycosylase pseudogene	pseudo	8.01	8.75	1.85	13.49	15.39	4.02	21.12	17.24	13.74
Merged-chr12-102391503-2	chr12	102390990	102391990	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161365)	TTS (NM_001161365)	48323.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	17.16	8.29	19.42	14.17	12.13	23.31	13.73	22.99	21.86
Merged-chr5-105685947-2	chr5	105685415	105686415	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-14054.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.58	3.23	2.77	5.4	1.4	0.8	14.79	8.84	3.12
Merged-chr1-134304855-2	chr1	134304347	134305347	+	896.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144855, intron 23 of 28)	intron (NM_001144855, intron 23 of 28)	14843.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	1.72	0.46	1.85	72.19	65.31	86.01	81.33	71.19	71.2
Merged-chr11-24357586-1	chr11	24357086	24358086	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124323.0	NR_045857	71316.0	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	2.29	5.53	12.02	2.7	7.93	6.43	6.34	3.98	7.49
Merged-chr1-75398874-3	chr1	75398373	75399373	+	896.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085370, intron 4 of 38)	intron (NM_001085370, intron 4 of 38)	-1212.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	2.86	4.61	5.55	4.05	11.66	10.45	11.62	3.54	8.12
Merged-chr2-150869608-1	chr2	150869108	150870108	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-27038.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	35.47	30.41	28.67	31.04	29.39	53.05	39.08	31.39	21.86
Merged-chr6-129209303-3	chr6	129208820	129209820	+	896.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28705.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	96.11	99.07	77.7	38.46	40.59	30.54	82.38	85.34	31.23
Merged-chr2-144695363-1	chr2	144694863	144695863	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	95410.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	10.87	5.99	5.55	35.09	10.73	20.09	9.51	8.4	7.49
Merged-chr13-64181137-1	chr13	64180637	64181637	+	896.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019986, intron 5 of 7)	intron (NM_019986, intron 5 of 7)	19271.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	3.43	1.84	1.85	2.7	2.33	6.43	4.22	0.88	4.37
Merged-chr12-73898922-1	chr12	73898422	73899422	+	896.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2402.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.29	3.69	0.92	1.35	2.8	7.23	2.11	3.54	1.25
Merged-chr1-191277842-3	chr1	191277321	191278321	+	896.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40297.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	17.16	11.52	5.55	26.99	11.2	9.65	10.56	6.63	4.37
Merged-chr11-100757749-3	chr11	100757259	100758259	+	896.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081194, exon 2 of 17)	exon (NM_001081194, exon 2 of 17)	2019.0	NM_001081194	380728.0	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	8.01	2.3	3.7	7.42	4.67	6.43	16.9	20.78	10.62
Merged-chr7-97171898-3	chr7	97171406	97172406	+	896.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90155.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	96.68	103.68	44.4	126.85	73.24	65.91	91.89	133.98	81.81
Merged-chr18-4325792-2	chr18	4325286	4326286	+	896.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27167.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	45.19	57.14	50.87	53.98	32.19	45.82	88.72	91.53	53.71
Merged-chr11-120932856-3	chr11	120932370	120933370	+	896.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	2.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	17.73	15.67	7.4	22.27	22.39	15.27	23.24	14.15	12.49
Merged-chr11-118230145-3	chr11	118229626	118230626	+	896.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-17384.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	89.24	80.64	63.82	155.86	86.3	108.51	104.56	85.78	52.46
Merged-chr7-18873522-2	chr7	18873033	18874033	+	896.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11157.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	1.72	1.84	3.7	2.02	2.8	4.02	2.11	3.1	1.25
Merged-chr6-86397782-3	chr6	86397281	86398281	+	896.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025823)	promoter-TSS (NM_025823)	-631.0	NM_025823	66881.0	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	103.54	114.27	95.27	126.17	106.83	95.65	184.83	174.66	66.82
Merged-chr7-4924171-3	chr7	4923690	4924690	+	896.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1310.0	NM_001358883	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	8.58	5.07	11.1	9.45	2.33	7.23	6.34	7.07	8.74
Merged-chr2-84296542-3	chr2	84296055	84297055	+	896.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128711.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.86	8.75	12.95	12.14	14.0	17.68	7.39	8.84	3.75
Merged-chr10-93960227-1	chr10	93959727	93960727	+	896.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3636.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	21.17	36.4	11.1	30.36	27.06	43.4	44.36	38.91	32.48
Merged-chr8-115530180-3	chr8	115529701	115530701	+	896.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176693.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	20.59	18.89	11.1	13.49	14.0	9.65	8.45	7.52	15.61
Merged-chr19-33102234-1	chr19	33101734	33102734	+	896.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54878.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	17.16	18.43	0.92	39.13	22.86	14.47	22.18	14.15	8.74
Merged-chr8-26888285-3	chr8	26887787	26888787	+	896.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-63864.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	19.45	26.26	15.72	24.96	21.46	21.7	19.01	9.73	10.62
Merged-chr3-37758953-2	chr3	37758420	37759420	+	896.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34560.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	14.87	16.13	12.95	3.37	2.33	4.82	5.28	1.33	6.25
Merged-chr7-100500882-3	chr7	100500304	100501304	+	896.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7446.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	92.1	71.88	72.15	80.97	62.05	86.81	107.73	110.1	40.59
Merged-chrX-167206033-3	chrX	167205537	167206537	+	896.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3181.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	37.76	35.02	33.3	44.53	32.66	30.54	31.69	26.09	45.59
Merged-chr1-182369659-3	chr1	182369175	182370175	+	896.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28069.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	12.59	11.98	3.7	25.64	19.13	17.68	24.29	14.15	15.61
Merged-chr10-81401354-3	chr10	81400816	81401816	+	896.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 8 of 8)	intron (NM_026756, intron 8 of 8)	8252.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	134.43	98.61	38.85	249.65	213.19	137.45	140.47	177.75	68.7
Merged-chr11-86357447-3	chr11	86356961	86357961	+	896.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080931)	promoter-TSS (NM_001080931)	64.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	186.49	253.43	217.36	221.31	195.93	205.77	260.88	216.22	164.25
Merged-chr4-139587540-3	chr4	139587046	139588046	+	896.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	12826.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	33.75	11.98	8.32	2.7	2.33	0.0	23.24	12.82	18.74
Merged-chr1-138153259-3	chr1	138152675	138153675	+	896.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	21951.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	79.52	90.31	49.95	66.8	59.71	61.89	74.99	66.77	28.1
Merged-chr1-181234506-3	chr1	181234019	181235019	+	896.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22541.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	74.94	89.39	76.77	80.97	112.43	131.82	127.8	107.45	68.7
Merged-chr10-21651655-3	chr10	21651149	21652149	+	896.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39196.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	33.18	29.95	24.05	36.43	44.32	35.37	38.02	50.85	30.6
Merged-chr1-185238686-3	chr1	185238176	185239176	+	896.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 7 of 34)	intron (NM_001163754, intron 7 of 34)	-4250.0	NR_034044	100217449.0	Mm.429560	NR_034044	ENSMUSG00000077571	Snora36b	MBI-87	small nucleolar RNA, H/ACA box 36B	snoRNA	32.61	33.18	31.45	23.62	32.19	39.39	23.24	26.09	16.24
Merged-chr17-45597258-3	chr17	45596750	45597750	+	896.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199115, intron 1 of 12)	intron (NM_001199115, intron 1 of 12)	-1348.0	NM_001199114	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	21.74	18.43	26.82	37.11	7.46	17.68	40.14	16.36	28.1
Merged-chr2-155751432-3	chr2	155750914	155751914	+	896.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011171, exon 1 of 4)	exon (NM_011171, exon 1 of 4)	197.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	36.61	22.12	20.35	31.04	15.39	25.72	49.64	42.89	27.48
Merged-chr4-46497695-3	chr4	46497191	46498191	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053179, intron 2 of 5)	intron (NM_053179, intron 2 of 5)	8362.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	5.15	5.53	7.4	5.4	3.27	1.61	3.17	0.88	2.5
Merged-chr3-81101473-1	chr3	81100973	81101973	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	B1F|SINE|Alu	65057.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	90.96	100.45	66.6	74.22	72.31	102.08	71.82	65.0	68.7
Merged-chr16-35765538-3	chr16	35765053	35766053	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MER57-int|LTR|ERV1	3803.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	105.83	73.73	35.15	91.76	33.12	76.36	60.2	25.65	30.6
Merged-chr3-10213442-1	chr3	10212942	10213942	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4826.0	NM_024406	11770.0	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|AFABP|ALBP|ALBP/Ap2|Ap2|Lbpl|P15	fatty acid binding protein 4, adipocyte	protein-coding	5.15	8.75	4.62	4.72	4.67	8.84	5.28	5.75	1.25
Merged-chr9-119977912-3	chr9	119977415	119978415	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	5108.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	25.17	22.12	30.52	22.27	13.06	29.74	33.8	19.46	19.98
Merged-chr13-58996648-3	chr13	58996165	58997165	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	188968.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	57.78	55.75	87.87	45.88	48.05	70.73	58.09	48.2	56.21
Merged-chr11-11812181-3	chr11	11811668	11812668	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3206.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	6.29	4.15	1.85	3.37	3.27	6.43	4.22	4.86	8.74
Merged-chr5-129959283-1	chr5	129958783	129959783	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	(TCC)n|Simple_repeat|Simple_repeat	17174.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	5.15	1.84	9.25	6.07	7.0	6.43	10.56	8.4	8.74
Merged-chr13-110753961-1	chr13	110753461	110754461	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149538.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	1.72	4.15	3.7	7.42	10.26	1.61	6.34	4.86	3.75
Merged-chr6-17811241-3	chr6	17810752	17811752	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	RLTR40|LTR|ERVK	62082.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	14.87	9.68	1.85	14.84	14.0	10.45	4.22	11.94	7.49
Merged-chr12-32017771-2	chr12	32017270	32018270	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	43509.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	4.58	5.99	0.0	3.37	3.73	11.25	6.34	15.92	8.74
Merged-chr9-40733425-2	chr9	40732935	40733935	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MER31B|LTR|ERV1	47471.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	37.18	31.33	24.05	66.8	52.25	67.52	2.11	0.0	2.5
Merged-chr2-132204004-1	chr2	132203504	132204504	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	43784.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	4.0	1.38	0.0	3.37	1.87	1.61	3.17	5.75	2.5
Merged-chr4-75264439-1	chr4	75263939	75264939	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	13853.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.0	4.15	1.85	2.02	7.0	0.0	5.28	1.33	3.12
Merged-chr5-107853956-1	chr5	107853456	107854456	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	ORR1D1-int|LTR|ERVL-MaLR	21151.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	10.3	5.53	8.32	10.12	5.13	15.27	2.11	6.63	7.49
Merged-chr7-16816773-3	chr7	16816279	16817279	+	896.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173430)	promoter-TSS (NM_173430)	-47.0	NM_173430	243853.0	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	61.78	58.98	79.55	66.8	54.58	102.08	67.6	49.08	58.71
Merged-chr3-137919159-1	chr3	137918659	137919659	+	896.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019920, intron 2 of 6)	intron (NM_019920, intron 2 of 6)	604.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	148.73	167.26	111.92	198.37	222.99	148.7	312.63	307.75	104.3
Merged-chr2-165855777-3	chr2	165855280	165856280	+	895.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	2393.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	120.13	112.89	73.07	118.08	68.58	65.91	90.83	115.41	58.71
Merged-chr19-25052446-3	chr19	25051929	25052929	+	895.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 2 of 47)	intron (NM_028785, intron 2 of 47)	52900.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	21.74	17.97	18.5	20.92	37.32	30.54	27.46	25.2	22.48
Merged-chr13-64274750-5	chr13	64274244	64275244	+	895.904785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172587, exon 1 of 14)	exon (NM_172587, exon 1 of 14)	244.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	21.74	11.98	12.95	89.06	74.64	36.97	53.87	42.01	13.12
Merged-chr14-121378436-3	chr14	121377903	121378903	+	895.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	CpG	827.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	61.78	71.42	64.75	64.1	67.18	78.77	76.05	70.75	64.33
Merged-chr16-92038155-3	chr16	92037650	92038650	+	895.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20172.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	23.45	20.27	13.87	27.66	21.93	32.15	27.46	20.78	8.74
Merged-chr14-10129838-2	chr14	10129331	10130331	+	895.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	245736.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	5.72	2.3	3.7	3.37	3.73	11.25	4.22	4.42	3.75
Merged-chr3-146120183-2	chr3	146119721	146120721	+	895.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1570.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	4.58	5.07	0.92	6.07	1.87	4.82	2.11	5.75	0.0
Merged-chr6-136660051-2	chr6	136659561	136660561	+	895.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	1832.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	177.91	192.61	149.84	78.27	73.24	61.09	294.68	325.88	136.15
Merged-chr6-34059952-3	chr6	34059444	34060444	+	895.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028886, intron 6 of 19)	intron (NM_028886, intron 6 of 19)	30496.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.0	4.15	5.55	2.7	4.2	10.45	8.45	2.21	3.75
Merged-chr8-126901291-3	chr8	126900787	126901787	+	895.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44634.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	8.01	12.44	10.17	12.14	6.53	6.43	12.67	3.98	5.0
Merged-chr11-60106088-7	chr11	60105647	60106647	+	895.8095089999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	CpG	1134.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	221.96	265.87	226.61	185.55	218.79	216.22	248.2	195.88	171.12
Merged-chr12-40221706-3	chr12	40221209	40222209	+	895.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1102.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	125.28	147.91	79.55	128.2	170.28	99.67	98.23	145.47	51.84
Merged-chr9-22367670-3	chr9	22367168	22368168	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	A-rich|Low_complexity|Low_complexity	21538.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	41.19	40.09	30.52	31.04	32.19	32.96	51.75	46.87	29.98
Merged-chr5-138265165-3	chr5	138264675	138265675	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347507, exon 4 of 4)	3' UTR (NM_001347507, exon 4 of 4)	-1123.0	NM_153161	231807.0	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	22.88	23.96	16.65	29.01	10.26	28.94	22.18	12.82	19.36
Merged-chr8-14642625-3	chr8	14642134	14643134	+	895.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-245902.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	9.15	5.99	3.7	18.22	10.26	3.22	26.4	11.94	11.87
Merged-chr1-88700821-6	chr1	88700320	88701320	+	895.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	1371.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	194.5	266.79	149.84	177.45	169.34	139.06	259.82	237.0	163.0
Merged-chr6-94163274-1	chr6	94162774	94163774	+	895.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	74168.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	9.72	5.53	5.55	24.29	23.79	16.88	8.45	5.31	8.74
Merged-chr5-74729683-1	chr5	74729183	74730183	+	895.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26780.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.15	4.15	1.85	5.4	5.6	8.04	1.06	1.33	0.0
Merged-chr9-44482709-3	chr9	44482224	44483224	+	895.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-101.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	50.34	32.25	39.77	45.21	20.99	49.83	62.31	36.26	35.6
Merged-chr11-43349652-2	chr11	43349143	43350143	+	895.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24818.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	5.15	4.61	8.32	16.19	6.06	11.25	4.22	4.42	3.75
Merged-chr5-66079540-3	chr5	66079041	66080041	+	895.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18638.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	36.04	32.72	18.5	49.93	32.19	20.09	48.58	39.8	17.49
Merged-chr4-129785381-3	chr4	129784865	129785865	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35114.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	29.17	21.2	5.55	24.29	13.06	24.92	17.96	18.57	26.23
Merged-chr15-85132004-3	chr15	85131513	85132513	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080470)	promoter-TSS (NM_080470)	-56.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	6.29	5.53	1.85	2.7	6.06	0.0	8.45	2.65	1.25
Merged-chr2-33131826-3	chr2	33131362	33132362	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355201)	promoter-TSS (NM_001355201)	-426.0	NM_001355201	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	14.3	15.67	9.25	19.57	15.39	24.92	17.96	15.03	12.49
Merged-chr6-116719108-3	chr6	116718600	116719600	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2342.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	50.34	47.0	37.0	43.86	39.65	59.48	58.09	67.21	48.71
Merged-chr10-7936718-3	chr10	7936225	7937225	+	895.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	16340.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	32.61	38.25	25.9	26.31	20.06	19.29	22.18	12.38	9.37
Merged-chr1-75190074-3	chr1	75189582	75190582	+	895.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003917, intron 4 of 15)	intron (NM_001003917, intron 4 of 15)	1928.0	NM_001003917	245860.0	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	9.15	11.52	6.47	14.84	13.06	35.37	11.62	10.17	28.73
Merged-chr8-25537886-3	chr8	25537362	25538362	+	895.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	18221.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	15.45	9.68	6.47	16.87	5.6	16.88	29.57	15.92	13.12
Merged-chr14-75075423-3	chr14	75074923	75075923	+	895.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	55460.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	24.03	17.05	30.52	18.89	11.66	8.04	30.63	22.99	18.74
Merged-chr14-73382921-3	chr14	73382414	73383414	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	2375.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	229.39	276.93	108.22	226.71	246.32	157.54	334.81	323.67	118.66
Merged-chr8-120634547-3	chr8	120634018	120635018	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197988)	promoter-TSS (NM_197988)	-136.0	NM_197988	68918.0	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	8.01	1.84	1.85	15.52	5.6	4.02	11.62	2.65	1.25
Merged-chr1-16110937-1	chr1	16110437	16111437	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	5055.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.29	7.37	5.55	10.8	10.26	8.04	11.62	2.65	3.75
Merged-chr3-96570957-1	chr3	96570457	96571457	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4156.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	54.92	56.68	66.6	51.28	52.72	94.85	52.81	58.37	44.97
Merged-chr5-122268200-3	chr5	122267685	122268685	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3725.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	47.48	45.62	39.77	42.51	24.72	45.82	64.43	71.63	29.35
Merged-chr9-32716246-1	chr9	32715746	32716746	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	20204.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	8.58	1.38	5.55	3.37	11.2	16.08	7.39	4.42	8.12
Merged-chr16-4316265-3	chr16	4315767	4316767	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 3 of 10)	intron (NM_009624, intron 3 of 10)	87038.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	8.01	0.92	1.85	2.02	5.13	3.22	5.28	1.77	6.25
Merged-chr18-32184246-3	chr18	32183736	32184736	+	895.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	Lx9|LINE|L1	21147.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	5.72	6.45	11.1	15.52	4.67	9.65	4.22	2.65	6.25
Merged-chr8-34065460-1	chr8	34064960	34065960	+	895.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	42354.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.0	5.99	6.47	6.07	1.87	3.22	3.17	0.88	2.5
Merged-chr15-59860978-2	chr15	59860479	59861479	+	895.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66020.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.86	4.15	14.8	4.72	3.73	1.61	6.34	1.77	4.37
Merged-chr11-83039364-2	chr11	83038853	83039853	+	895.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355513, intron 1 of 5)	B2_Mm2|SINE|B2	689.0	NR_073523	237887.0	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	protein-coding	10.3	5.99	3.7	16.19	7.46	1.61	7.39	3.98	2.5
Merged-chr1-43445894-7	chr1	43445345	43446345	+	895.619019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	94.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	92.1	55.75	36.07	97.83	80.71	48.23	118.29	84.45	41.22
Merged-chr5-123662241-3	chr5	123661737	123662737	+	895.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	22124.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	69.22	81.56	46.25	149.11	95.63	64.3	108.79	116.73	60.58
Merged-chr13-85290866-3	chr13	85290357	85291357	+	895.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	49.77	64.97	40.7	46.56	58.31	55.46	55.98	61.02	35.6
Merged-chr6-122340571-2	chr6	122340058	122341058	+	895.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073364)	promoter-TSS (NR_073364)	-331.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	26.89	25.8	12.95	45.88	26.12	31.35	32.74	26.97	24.98
Merged-chr12-35338369-2	chr12	35337863	35338863	+	895.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143466.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	2.86	5.53	8.32	5.4	2.8	5.63	4.22	3.98	5.0
Merged-chr10-8059743-3	chr10	8059232	8060232	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103609.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	60.07	46.54	53.65	65.45	34.06	67.52	51.75	53.5	37.47
Merged-chr7-12910336-3	chr7	12909833	12910833	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_009095	20103.0	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	65.21	63.59	100.82	76.24	67.18	132.63	94.0	62.79	104.92
Merged-chr2-132121290-3	chr2	132120786	132121786	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	B3|SINE|B2	23822.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	17.16	10.14	7.4	16.87	7.46	12.86	7.39	13.71	9.99
Merged-chr2-14324846-3	chr2	14324332	14325332	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 25 of 29)	RLTR16B_MM|LTR|ERVK	-63566.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	17.16	27.19	9.25	22.94	19.59	20.09	14.79	13.71	3.75
Merged-chr6-134090504-3	chr6	134090011	134091011	+	895.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	54811.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	15.45	10.6	18.5	20.24	14.0	2.41	21.12	15.03	14.36
Merged-chr16-90885566-3	chr16	90885060	90886060	+	895.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027627, intron 4 of 6)	intron (NM_027627, intron 4 of 6)	49289.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	13.73	5.53	3.7	6.75	11.2	11.25	9.51	6.19	11.24
Merged-chr12-73632949-3	chr12	73632447	73633447	+	895.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	48151.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	36.61	16.59	18.5	35.76	20.99	47.42	19.01	16.8	24.98
Merged-chr6-6216596-1	chr6	6216096	6217096	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177572, intron 1 of 17)	intron (NM_001177572, intron 1 of 17)	577.0	NM_015829	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	10.3	13.82	11.1	24.29	31.72	34.56	6.34	5.31	7.49
Merged-chr9-102625664-2	chr9	102625176	102626176	+	895.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181394)	promoter-TSS (NM_181394)	448.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	198.5	199.98	196.09	177.45	181.47	168.8	164.76	165.37	83.06
Merged-chr19-34588362-2	chr19	34587899	34588899	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010501, exon 2 of 2)	3' UTR (NM_010501, exon 2 of 2)	4870.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	24.6	28.57	35.15	34.41	27.52	46.62	87.66	72.96	74.32
Merged-chr10-117839111-3	chr10	117838623	117839623	+	895.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3|SINE|B2	6851.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	61.78	82.48	82.32	68.82	42.45	81.99	90.83	95.95	49.96
Merged-chr18-44759832-2	chr18	44759333	44760333	+	895.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	52349.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	36.04	47.46	42.55	65.45	77.91	56.27	87.66	107.45	54.96
Merged-chr13-73765418-3	chr13	73764936	73765936	+	895.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	1739.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	33.75	43.77	59.2	41.83	50.85	48.23	41.19	44.22	41.84
Merged-chr13-22015884-3	chr13	22015387	22016387	+	895.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6146.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	4.58	1.84	0.0	4.05	5.6	3.22	2.11	2.65	0.0
Merged-chr4-141077898-3	chr4	141077377	141078377	+	895.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149724, intron 1 of 8)	CpG	480.0	NR_149724	66147.0	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898|NECAP-2	NECAP endocytosis associated 2	protein-coding	239.12	219.33	257.14	182.17	210.4	200.95	274.61	213.12	111.79
Merged-chr14-31376125-3	chr14	31375637	31376637	+	895.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 6 of 7)	intron (NM_001347585, intron 6 of 7)	39499.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	130.43	102.75	72.15	167.33	90.5	77.16	137.3	147.24	60.58
Merged-chr7-128738181-3	chr7	128737685	128738685	+	895.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 1 of 15)	intron (NM_145955, intron 1 of 15)	2244.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	50.91	51.61	40.7	35.76	26.12	36.17	53.87	60.58	23.73
Merged-chr19-4098542-3	chr19	4098035	4099035	+	895.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026373, exon 4 of 4)	exon (NM_026373, exon 4 of 4)	1184.0	NM_026373	52004.0	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	80.66	73.73	51.8	66.12	55.98	71.54	80.27	81.8	54.96
Merged-chr16-22438789-2	chr16	22438245	22439245	+	895.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358428)	promoter-TSS (NM_001358428)	-377.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	70.36	87.09	67.52	53.98	44.78	63.5	66.54	72.96	48.09
Merged-chr2-173535472-2	chr2	173534991	173535991	+	895.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	12899.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	15.45	16.13	10.17	25.64	16.79	25.72	43.3	38.03	18.74
Merged-chr9-111053627-1	chr9	111053127	111054127	+	895.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	3617.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	7.44	5.53	0.92	11.47	3.27	9.65	4.22	3.1	6.25
Merged-chr4-6384745-3	chr4	6384242	6385242	+	895.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016807, intron 4 of 8)	intron (NM_016807, intron 4 of 8)	19062.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	37.18	43.31	15.72	72.87	61.11	36.97	69.71	58.37	14.99
Merged-chr19-10709519-3	chr19	10709002	10710002	+	895.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361959, intron 2 of 3)	intron (NM_001361959, intron 2 of 3)	8734.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	13.73	4.15	2.77	8.1	2.8	4.82	5.28	2.21	9.99
Merged-chr19-21064691-2	chr19	21064216	21065216	+	895.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39994.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	7.44	3.23	11.1	7.42	5.13	9.65	1.06	7.07	8.74
Merged-chr1-134063484-3	chr1	134062974	134063974	+	895.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15681.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	71.51	93.08	48.1	85.01	108.23	134.23	53.87	61.9	74.94
Merged-chr4-43218165-3	chr4	43217654	43218654	+	895.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081413, intron 11 of 39)	intron (NM_001081413, intron 11 of 39)	-49005.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	20.59	23.04	19.42	22.27	21.93	27.33	26.4	19.46	13.12
Merged-chr8-33619052-1	chr8	33618552	33619552	+	895.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178648)	TTS (NM_178648)	19431.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	8.58	2.76	3.7	10.8	11.2	11.25	24.29	29.18	6.25
Merged-chr2-117327117-3	chr2	117326622	117327622	+	895.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	15755.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	19.45	18.89	21.27	12.14	13.06	19.29	20.07	13.71	8.12
Merged-chr2-181409811-2	chr2	181409313	181410313	+	895.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028125)	TTS (NM_028125)	14575.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	5.15	10.6	7.4	27.66	33.59	31.35	43.3	47.75	19.36
Merged-chr18-23753059-3	chr18	23752596	23753596	+	895.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126066)	promoter-TSS (NR_126066)	-629.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	69.79	53.45	24.97	65.45	34.52	9.65	52.81	43.77	21.23
Merged-chr8-109779440-4	chr8	109778892	109779892	+	895.2958369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	809.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	447.92	532.67	416.23	378.52	453.91	331.16	409.8	455.87	304.77
Merged-chr8-128111344-3	chr8	128110855	128111855	+	895.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166870.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	17.16	13.36	12.02	3.37	7.46	5.63	23.24	13.71	9.99
Merged-chr13-101656011-3	chr13	101655529	101656529	+	895.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	36601.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.15	7.83	1.85	6.07	3.27	4.82	5.28	2.21	0.0
Merged-chr2-70503621-1	chr2	70503121	70504121	+	895.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040496, intron 1 of 2)	intron (NR_040496, intron 1 of 2)	-5198.0	NM_025744	66748.0	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	1.14	0.92	1.85	4.05	1.87	3.22	3.17	1.33	5.62
Merged-chr18-68131427-3	chr18	68130943	68131943	+	895.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-96503.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	12.01	9.22	7.4	15.52	10.26	8.84	10.56	8.84	6.25
Merged-chr9-57565797-3	chr9	57565285	57566285	+	895.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022813, intron 1 of 8)	intron (NM_022813, intron 1 of 8)	4841.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	40.62	30.87	29.6	43.86	22.86	51.44	27.46	20.34	24.36
Merged-chr7-135705311-3	chr7	135704805	135705805	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 7 of 13)	intron (NM_001081117, intron 7 of 13)	11074.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	68.65	68.66	46.25	62.07	34.52	45.01	54.92	68.54	60.58
Merged-chr3-127289038-1	chr3	127288538	127289538	+	895.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	RMER5|LTR|ERV1	120020.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	5.15	2.3	3.7	5.4	1.87	5.63	35.91	19.01	11.87
Merged-chr19-10820304-2	chr19	10819793	10820793	+	895.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 1 of 12)	L1MC4|LINE|L1	9765.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	1.72	4.15	3.7	10.12	15.39	12.86	7.39	4.86	5.0
Merged-chr19-17334999-3	chr19	17334498	17335498	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	4507.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	24.03	23.96	13.87	31.04	20.06	24.92	102.45	113.19	91.18
Merged-chr1-152790362-3	chr1	152789884	152790884	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9769.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	14.3	7.37	9.25	17.54	2.33	8.04	13.73	5.31	7.49
Merged-chr10-51456613-3	chr10	51456110	51457110	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24002.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	83.52	100.45	86.02	99.18	100.3	123.78	122.52	159.18	86.18
Merged-chr2-22722015-3	chr2	22721513	22722513	+	895.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52314.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	5.72	8.29	16.65	4.72	6.53	6.43	7.39	6.19	6.25
Merged-chr6-128872475-2	chr6	128871975	128872975	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	BGLII_B|LTR|ERVK	-15112.0	NM_001289706	93675.0	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	13.73	22.12	7.4	7.42	7.46	6.43	6.34	6.63	4.37
Merged-chr4-55508963-2	chr4	55508526	55509526	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23449.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	15.45	11.06	5.55	16.87	19.59	14.47	4.22	5.75	4.37
Merged-chr16-84606764-2	chr16	84606262	84607262	+	895.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73027.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	5.15	12.44	11.1	4.72	2.8	1.61	6.34	11.05	4.37
Merged-chr1-75209062-3	chr1	75208559	75209559	+	895.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029010, exon 3 of 17)	exon (NM_029010, exon 3 of 17)	1719.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	31.46	22.12	25.9	51.28	41.99	69.13	34.85	38.91	30.6
Merged-chr8-61921218-3	chr8	61920706	61921706	+	895.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6881.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	163.04	218.41	104.52	211.86	232.32	136.64	199.62	264.42	123.66
Merged-chr16-90259197-3	chr16	90258689	90259689	+	895.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 4 of 19)	intron (NM_001346799, intron 4 of 19)	25297.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	50.91	47.46	17.57	56.0	36.85	20.09	49.64	28.3	18.74
Merged-chr10-8466126-3	chr10	8465641	8466641	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	52684.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.58	4.61	2.77	7.42	4.2	14.47	8.45	5.31	8.74
Merged-chr3-79525227-3	chr3	79524729	79525729	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	42450.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	30.32	27.65	27.75	60.05	27.99	28.94	40.14	27.86	11.87
Merged-chr15-6568016-3	chr15	6567505	6568505	+	895.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11842.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	119.56	156.67	127.64	101.88	82.11	123.78	115.12	114.52	119.28
Merged-chr9-119156983-2	chr9	119156427	119157427	+	895.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146230, exon 1 of 12)	exon (NM_146230, exon 1 of 12)	166.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	8.58	2.3	5.55	4.72	1.87	3.22	3.17	1.77	5.0
Merged-chr19-58132095-2	chr19	58131597	58132597	+	895.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181415, exon 29 of 29)	3' UTR (NM_181415, exon 29 of 29)	80930.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	8.01	6.91	7.4	11.47	10.73	6.43	5.28	3.1	1.87
Merged-chr10-19031159-3	chr10	19030663	19031663	+	895.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15753.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	10.87	5.53	3.7	7.42	5.6	9.65	14.79	6.19	11.87
Merged-chr12-75415178-3	chr12	75414687	75415687	+	895.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	1594.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	7.44	9.22	7.4	10.12	12.6	17.68	6.34	13.71	16.24
Merged-chr5-24684857-3	chr5	24684325	24685325	+	895.055542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	-990.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	19.45	25.8	24.97	127.52	146.02	145.49	173.21	211.8	112.42
Merged-chr3-86960712-1	chr3	86960212	86961212	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-25874.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	6.29	1.38	1.85	30.36	27.99	15.27	3.17	4.42	9.37
Merged-chr16-29989722-3	chr16	29989218	29990218	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10594.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	44.62	44.7	14.8	37.78	44.32	49.03	70.76	60.13	29.98
Merged-chr2-102701681-3	chr2	102701175	102702175	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-4763.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	22.88	17.05	7.4	62.07	36.85	45.82	26.4	23.43	11.87
Merged-chr6-57745672-1	chr6	57745172	57746172	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43217.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	10.87	1.84	7.4	5.4	0.47	2.41	3.17	2.65	3.75
Merged-chr11-77406486-1	chr11	77405986	77406986	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 4 of 14)	ORR1D2|LTR|ERVL-MaLR	-57427.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	16.59	21.2	24.97	18.89	22.39	19.29	19.01	12.82	28.73
Merged-chr19-6300558-1	chr19	6300058	6301058	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010119)	TTS (NM_010119)	-5899.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	138.44	123.95	111.92	146.41	86.3	138.25	113.01	81.8	64.95
Merged-chr3-126621402-1	chr3	126620902	126621902	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	MTD|LTR|ERVL-MaLR	24451.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	10.87	11.06	24.97	18.22	5.6	11.25	51.75	53.5	39.35
Merged-chr13-21975000-4	chr13	21974486	21975486	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6195.0	NM_001162928	195236.0	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	116.7	212.88	137.82	114.7	161.41	110.12	133.08	198.98	106.17
Merged-chr11-82867917-1	chr11	82867417	82868417	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	2827.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	12.01	11.52	0.0	20.92	14.46	18.49	44.36	32.28	9.99
Merged-chr4-8804138-1	chr4	8803638	8804638	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 3 of 36)	intron (NM_001355382, intron 3 of 36)	52814.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.29	14.28	5.55	20.92	18.19	18.49	11.62	8.4	6.87
Merged-chr16-92669729-2	chr16	92669231	92670231	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	RMER17C|LTR|ERVK	27598.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	18.31	12.9	30.52	16.19	7.93	14.47	22.18	16.36	6.87
Merged-chr6-13052308-1	chr6	13051808	13052808	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-17451.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	12.01	6.91	3.7	9.45	3.27	3.22	6.34	6.19	7.49
Merged-chr2-72203770-1	chr2	72203270	72204270	+	895.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-81867.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.86	1.84	1.85	0.67	0.47	3.22	6.34	3.54	1.87
Merged-chr16-35871275-4	chr16	35870746	35871746	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039530, exon 1 of 17)	exon (NM_001039530, exon 1 of 17)	136.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	279.73	302.74	249.74	251.67	202.46	264.45	333.75	334.72	176.74
Merged-chr10-122745925-3	chr10	122745428	122746428	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	66613.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	24.03	24.88	12.95	51.95	25.19	23.31	70.76	53.5	24.36
Merged-chr12-99994634-1	chr12	99994134	99995134	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	30135.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	63.5	48.84	29.6	121.45	61.58	77.97	55.98	34.49	13.74
Merged-chr8-25743006-1	chr8	25742506	25743506	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	B1_Mur3|SINE|Alu	11274.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	4.0	2.76	0.0	4.72	6.06	0.0	4.22	3.1	7.49
Merged-chr7-17003406-1	chr7	17002906	17003906	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	8818.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	9.15	8.75	12.95	4.05	6.53	10.45	9.51	6.19	15.61
Merged-chr1-131931013-3	chr1	131930500	131931500	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145804, intron 6 of 6)	intron (NM_001145804, intron 6 of 6)	20542.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	179.05	191.23	44.4	97.83	157.68	89.22	100.34	171.12	75.57
Merged-chr13-100837354-1	chr13	100836854	100837854	+	895.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3927.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.86	1.84	1.85	3.37	2.8	16.08	4.22	5.31	3.12
Merged-chr12-35269696-3	chr12	35269192	35270192	+	895.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-74795.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	22.31	20.27	9.25	31.04	24.26	20.09	38.02	34.93	28.1
Merged-chr16-33337322-3	chr16	33336836	33337836	+	894.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43400.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	20.59	24.88	7.4	20.24	21.93	12.86	11.62	15.92	6.25
Merged-chr4-145218055-3	chr4	145217567	145218567	+	894.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 9 of 9)	intron (NM_011610, intron 9 of 9)	-23062.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	27.46	21.66	42.55	39.13	26.12	41.8	47.53	38.47	28.1
Merged-chr12-12300349-3	chr12	12299840	12300840	+	894.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	38201.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	50.91	62.21	65.67	43.86	47.58	72.34	66.54	84.9	56.21
Merged-chr8-11430966-3	chr8	11430474	11431474	+	894.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 29 of 47)	intron (NM_009932, intron 29 of 47)	-46955.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	2.86	5.07	5.55	6.07	2.8	1.61	2.11	1.77	1.25
Merged-chr3-69062970-3	chr3	69062476	69063476	+	894.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18234.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	13.16	8.75	35.15	10.12	14.46	9.65	14.79	16.8	8.74
Merged-chr13-47230490-3	chr13	47229972	47230972	+	894.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 4 of 7)	intron (NM_146042, intron 4 of 7)	36469.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	170.47	144.23	130.42	180.82	132.49	211.4	88.72	113.19	68.7
Merged-chr16-31293983-3	chr16	31293479	31294479	+	894.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18702.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	13.16	7.83	3.7	16.19	11.2	23.31	12.67	11.94	15.61
Merged-chr11-117353316-3	chr11	117352820	117353820	+	894.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017380, intron 5 of 9)	intron (NM_017380, intron 5 of 9)	21007.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	21.17	6.45	16.65	22.27	14.0	10.45	11.62	3.54	2.5
Merged-chr15-98661505-3	chr15	98661013	98662013	+	894.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080981, intron 1 of 16)	intron (NM_001080981, intron 1 of 16)	1376.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	76.66	57.14	43.47	75.57	50.85	36.17	45.42	71.19	36.22
Merged-chr17-4995382-8	chr17	4994932	4995932	+	894.8541869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085355, exon 1 of 20)	exon (NM_001085355, exon 1 of 20)	358.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	73.79	58.06	122.09	93.11	54.58	102.88	119.35	53.06	73.69
Merged-chr12-117831748-3	chr12	117831271	117832271	+	894.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12090.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	12.01	9.68	16.65	8.1	9.33	1.61	5.28	2.21	4.37
Merged-chr5-150840326-2	chr5	150839847	150840847	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112260.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	23.45	45.16	24.05	29.69	35.45	42.6	44.36	63.23	35.6
Merged-chr3-95609376-2	chr3	95608855	95609855	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146133, intron 3 of 4)	intron (NM_146133, intron 3 of 4)	-15625.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	22.88	18.43	33.3	16.87	17.73	19.29	11.62	10.17	29.98
Merged-chr7-101051455-2	chr7	101050941	101051941	+	894.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39388.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	22.88	18.89	24.05	58.03	26.59	30.54	14.79	12.38	12.49
Merged-chr6-17652316-3	chr6	17651799	17652799	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 3 of 9)	ORR1E|LTR|ERVL-MaLR	15289.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	28.03	35.02	31.45	31.04	26.59	32.96	20.07	30.51	17.49
Merged-chrY-90739886-1	chrY	90739386	90740386	+	894.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15164.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	3.43	2.3	1.85	3.37	4.2	1.61	15.84	27.41	83.06
Merged-chr10-4041976-1	chr10	4041476	4042476	+	894.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 17 of 27)	intron (NM_001170785, intron 17 of 27)	68901.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	4.58	5.53	1.85	3.37	5.13	3.22	13.73	12.38	6.25
Merged-chr7-126086357-3	chr7	126085856	126086856	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3945.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	6.29	7.83	9.25	8.77	2.8	3.22	5.28	5.31	3.12
Merged-chr9-7344314-3	chr9	7343808	7344808	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320077)	promoter-TSS (NM_001320077)	-89.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	18.88	15.67	11.1	26.31	14.93	24.11	9.51	3.54	14.99
Merged-chr6-135261304-3	chr6	135260791	135261791	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6955.0	NM_001080553	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	1.72	1.38	1.85	5.4	1.4	4.02	4.22	4.86	5.0
Merged-chr10-117747740-3	chr10	117747239	117748239	+	894.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1381.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	42.9	66.35	54.57	44.53	35.45	53.05	83.44	72.52	52.46
Merged-chr4-85591251-3	chr4	85590747	85591747	+	894.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	385791.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	6.29	6.45	12.02	4.72	3.73	5.63	16.9	8.84	9.99
Merged-chr13-51848044-4	chr13	51847505	51848505	+	894.8035890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011817, exon 4 of 4)	3' UTR (NM_011817, exon 4 of 4)	1330.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	139.01	199.52	157.24	155.19	159.55	148.7	186.94	156.53	150.51
Merged-chr18-56754987-1	chr18	56754487	56755487	+	894.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47174.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	13.16	6.45	18.5	19.57	7.93	14.47	4.22	11.05	6.25
Merged-chr17-65740502-3	chr17	65740012	65741012	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	32240.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	21.74	23.96	5.55	68.82	31.72	45.82	55.98	49.52	37.47
Merged-chr4-97772781-3	chr4	97772254	97773254	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-4872.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	121.85	102.75	58.27	102.56	59.25	74.75	146.81	137.07	95.55
Merged-chr7-68112777-3	chr7	68112270	68113270	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	151463.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	7.44	10.6	3.7	6.07	1.87	5.63	10.56	2.65	3.12
Merged-chr16-76364785-3	chr16	76364284	76365284	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	8265.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	62.93	99.53	74.92	41.16	33.59	25.72	63.37	72.96	53.71
Merged-chr17-43017609-3	chr17	43017031	43018031	+	894.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	CpG	976.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	89.81	82.94	83.25	85.69	75.57	103.69	48.58	60.13	52.46
Merged-chr10-26375228-7	chr10	26374720	26375720	+	894.776184	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172787)	promoter-TSS (NM_172787)	-1.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	60.64	29.49	33.3	64.1	19.59	49.83	58.09	23.43	55.58
Merged-chr7-25219147-3	chr7	25218644	25219644	+	894.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207677, exon 2 of 5)	5' UTR (NM_207677, exon 2 of 5)	715.0	NM_207677	67379.0	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	91.53	64.51	36.07	100.53	93.3	49.83	113.01	116.73	33.72
Merged-chr16-30604694-3	chr16	30604192	30605192	+	894.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4969.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	31.46	29.95	19.42	35.09	21.46	24.11	27.46	27.41	18.11
Merged-chr5-125306556-3	chr5	125306059	125307059	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	PB1D9|SINE|Alu	34535.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	37.76	38.71	28.67	31.71	19.13	21.7	42.25	71.63	23.73
Merged-chr2-144698191-3	chr2	144697683	144698683	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	98230.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	18.31	9.22	8.32	38.46	24.26	27.33	8.45	10.17	6.25
Merged-chr4-63683267-3	chr4	63682771	63683771	+	894.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48850.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	8.58	7.37	4.62	8.1	8.86	4.82	5.28	2.65	5.0
Merged-chr15-25412992-3	chr15	25412476	25413476	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	CpG	788.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	59.49	37.78	49.02	91.76	91.9	79.58	128.85	90.2	46.84
Merged-chr17-33995786-1	chr17	33995286	33996286	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001347346)	TTS (NM_001347346)	4547.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	15.45	6.45	3.7	1.35	0.93	7.23	4.22	4.86	0.0
Merged-chr13-81155555-1	chr13	81155055	81156055	+	894.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	191481.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.3	4.15	5.55	4.72	4.2	1.61	5.28	3.98	7.49
Merged-chr6-115343796-3	chr6	115343314	115344314	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17137.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	66.93	80.18	59.2	80.29	72.78	81.99	84.49	95.07	58.71
Merged-chr19-36768279-3	chr19	36767778	36768778	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31674.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.58	5.99	5.55	18.22	11.2	12.06	27.46	32.72	16.24
Merged-chr18-38298174-3	chr18	38297658	38298658	+	894.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361267, intron 2 of 9)	intron (NM_001361267, intron 2 of 9)	1353.0	NM_001164621	56736.0	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	63.5	80.64	34.22	57.35	61.11	37.78	68.65	64.11	31.23
Merged-chr5-122778975-2	chr5	122778497	122779497	+	894.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	CpG	413.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	148.73	77.41	105.44	182.17	80.24	118.96	147.87	64.56	41.22
Merged-chr14-61697085-2	chr14	61696659	61697659	+	894.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14786.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	87.52	88.01	89.72	103.91	75.57	101.28	121.46	117.62	57.46
Merged-chr15-78895865-3	chr15	78895377	78896377	+	894.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	21.17	11.98	7.4	15.52	2.8	9.65	34.85	15.48	16.86
Merged-chr7-130812594-3	chr7	130812122	130813122	+	894.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081038, intron 10 of 15)	intron (NM_001081038, intron 10 of 15)	38553.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	8.58	9.22	3.7	3.37	6.06	4.82	10.56	7.07	6.87
Merged-chr11-77196977-2	chr11	77196473	77197473	+	894.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8005.0	NM_176965	319634.0	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	9.72	6.91	7.4	18.22	6.06	14.47	5.28	6.63	5.62
Merged-chr5-134727287-2	chr5	134726765	134727765	+	894.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007925, intron 10 of 36)	intron (NM_007925, intron 10 of 36)	20058.0	NM_007925	13717.0	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	5.15	6.45	3.7	7.42	2.8	2.41	6.34	4.42	0.0
Merged-chr13-64281183-3	chr13	64280675	64281675	+	894.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6187.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	12.59	4.61	2.77	18.89	22.39	38.58	11.62	15.48	13.12
Merged-chr15-31473001-2	chr15	31472450	31473450	+	894.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 20 of 25)	PB1D7|SINE|Alu	-19261.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	1.72	2.76	6.47	15.52	18.66	20.09	42.25	32.28	19.36
Merged-chr2-25427076-3	chr2	25426563	25427563	+	894.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013524)	TTS (NM_013524)	-1611.0	NM_007379	11305.0	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	25.74	11.52	42.55	18.22	6.06	25.72	15.84	7.52	11.24
Merged-chr12-86082585-3	chr12	86082084	86083084	+	894.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199843)	promoter-TSS (NM_001199843)	23.0	NM_001199843	76411.0	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	18.88	16.59	22.2	21.59	9.8	24.11	15.84	12.82	6.25
Merged-chr9-88939154-3	chr9	88938642	88939642	+	894.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17778.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	10.87	8.75	2.77	6.07	3.73	3.22	5.28	6.63	5.0
Merged-chr2-19388912-3	chr2	19388405	19389405	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029619, intron 3 of 4)	intron (NM_029619, intron 3 of 4)	17269.0	NM_029619	76467.0	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	20.02	20.74	27.75	29.69	41.99	38.58	22.18	18.13	19.36
Merged-chrX-74250595-3	chrX	74250091	74251091	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-4057.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	58.35	47.0	47.17	47.9	28.46	61.89	58.09	64.11	46.22
Merged-chr19-44332447-3	chr19	44331940	44332940	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183216)	promoter-TSS (NM_183216)	-886.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	17.16	11.52	10.17	29.01	18.66	11.25	31.69	19.01	8.74
Merged-chr3-115693675-3	chr3	115693180	115694180	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	21375.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.15	11.52	0.0	19.57	15.86	35.37	20.07	9.73	15.61
Merged-chr11-106302850-3	chr11	106302342	106303342	+	894.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008117)	promoter-TSS (NM_008117)	-946.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	6.86	5.53	3.7	2.02	1.87	4.02	2.11	3.1	1.25
Merged-chr4-43728705-1	chr4	43728205	43729205	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027511)	TTS (NM_027511)	-1329.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	4.58	3.23	0.0	9.45	10.73	16.88	2.11	4.42	9.37
Merged-chr3-148795974-1	chr3	148795474	148796474	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158661.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	12.59	7.83	3.7	9.45	5.13	4.82	4.22	8.84	1.25
Merged-chr13-74090443-1	chr13	74089943	74090943	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28158.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	1.14	2.76	1.85	4.72	0.47	3.22	1.06	1.33	6.25
Merged-chr17-30494454-2	chr17	30493966	30494966	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	81821.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	24.6	18.89	11.1	12.82	8.86	1.61	8.45	10.61	9.99
Merged-chr16-5203698-6	chr16	5203143	5204143	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013796, exon 2 of 10)	exon (NM_013796, exon 2 of 10)	369.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	97.25	130.86	120.24	114.7	195.93	187.28	140.47	157.41	121.78
Merged-chr16-30040202-1	chr16	30039702	30040702	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045878)	promoter-TSS (NR_045878)	-723.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	4.58	1.38	6.47	4.05	0.0	1.61	0.0	2.65	6.25
Merged-chr13-100247184-3	chr13	100246676	100247676	+	894.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010870, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	160.0	NM_010870	17951.0	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	29.17	29.03	35.15	41.83	33.12	43.4	79.21	78.71	33.72
Merged-chr18-57844669-1	chr18	57844169	57845169	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34009.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	26.89	37.78	56.42	62.75	41.99	33.76	50.7	43.77	19.36
Merged-chr13-110597646-1	chr13	110597146	110598146	+	894.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	202602.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	20.59	30.87	11.1	40.48	23.79	28.94	16.9	21.67	11.87
Merged-chr10-42244900-5	chr10	42244395	42245395	+	894.4799800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	31847.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	22.88	19.81	17.57	38.46	15.39	15.27	26.4	18.57	16.24
Merged-chr11-78165583-3	chr11	78165097	78166097	+	894.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009423)	promoter-TSS (NM_009423)	-47.0	NM_009423	22032.0	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	13.16	6.45	20.35	24.29	13.53	15.27	16.9	12.38	9.99
Merged-chr7-38200466-3	chr7	38200044	38201044	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16757.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	24.6	21.2	30.52	19.57	16.79	27.33	9.51	4.86	6.25
Merged-chr12-25249080-3	chr12	25248603	25249603	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119929.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	12.01	8.75	5.55	10.8	9.8	14.47	6.34	2.65	11.24
Merged-chr4-143211913-3	chr4	143211372	143212372	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	837.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	104.69	113.35	73.07	80.97	90.5	112.53	127.8	86.66	79.94
Merged-chr2-28205583-3	chr2	28205096	28206096	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019498)	promoter-TSS (NM_019498)	-93.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	6.86	1.38	7.4	2.02	0.0	3.22	5.28	2.65	0.0
Merged-chr3-60502506-3	chr3	60502005	60503005	+	894.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	1326.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	65.21	65.89	68.45	58.03	60.65	70.73	97.17	75.17	53.08
Merged-chr16-19969659-2	chr16	19969158	19970158	+	894.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	13391.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	14.87	4.61	12.02	9.45	12.13	11.25	19.01	7.07	8.74
Merged-chr6-119396405-3	chr6	119395909	119396909	+	894.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-7675.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	35.47	22.58	23.12	37.78	27.52	28.13	28.52	15.03	13.12
Merged-chr11-82866682-2	chr11	82866185	82867185	+	894.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164569, intron 1 of 7)	intron (NM_001164569, intron 1 of 7)	4059.0	NM_001164570	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	25.17	11.06	12.02	39.13	46.18	40.19	57.03	45.1	39.97
Merged-chr13-113556690-2	chr13	113556200	113557200	+	894.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-53856.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.43	0.92	2.77	0.0	3.27	3.22	8.45	4.42	2.5
Merged-chr17-57409874-3	chr17	57409362	57410362	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 7 of 22)	intron (NM_001355722, intron 7 of 22)	51176.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	30.32	23.04	18.5	22.94	9.33	12.86	10.56	6.63	23.11
Merged-chr8-66332393-3	chr8	66331886	66332886	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	Lx8b|LINE|L1	-53915.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	16.59	11.52	14.8	16.87	4.67	16.88	15.84	10.61	19.36
Merged-chr2-163929035-3	chr2	163928556	163929556	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-10373.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	129.86	111.05	106.37	179.47	125.49	129.41	74.99	52.18	30.6
Merged-chr4-99194698-3	chr4	99194216	99195216	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175029, intron 1 of 10)	intron (NM_175029, intron 1 of 10)	569.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	181.91	195.83	114.69	200.39	214.59	176.03	350.65	337.82	128.03
Merged-chr18-56981330-1	chr18	56980830	56981830	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5951.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	2.29	4.61	9.25	2.02	2.8	1.61	2.11	3.1	4.37
Merged-chr12-32459517-1	chr12	32459017	32460017	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80728.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	12.59	6.91	11.1	8.1	8.4	9.65	4.22	4.86	5.0
Merged-chr3-65188485-3	chr3	65187979	65188979	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289450, intron 1 of 14)	intron (NM_001289450, intron 1 of 14)	376.0	NM_001289450	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	50.34	51.61	24.97	64.1	40.12	35.37	59.15	80.47	33.72
Merged-chr3-109452175-1	chr3	109451675	109452675	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	111492.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	36.04	48.84	46.25	51.95	48.05	56.27	40.14	35.82	27.48
Merged-chr4-26438102-1	chr4	26437602	26438602	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91450.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	5.72	3.69	1.85	12.82	6.06	1.61	4.22	7.52	6.87
Merged-chr14-14686339-3	chr14	14685862	14686862	+	894.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16663.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	12.01	14.75	8.32	14.84	14.93	21.7	14.79	7.52	12.49
Merged-chr1-77459831-1	chr1	77459331	77460331	+	894.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	36937.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.29	3.23	1.85	6.07	2.33	8.04	2.11	1.33	9.99
Merged-chr4-129051408-3	chr4	129050916	129051916	+	894.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6855.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	24.03	17.51	22.2	16.87	13.06	11.25	19.01	6.63	13.74
Merged-chr1-37487170-3	chr1	37486672	37487672	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024017, exon 1 of 1)	non-coding (NR_024017, exon 1 of 1)	1433.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	72.08	100.45	63.82	82.32	69.04	77.16	85.55	95.07	75.57
Merged-chr18-4348978-6	chr18	4348491	4349491	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007746, exon 2 of 8)	exon (NM_007746, exon 2 of 8)	3962.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	100.11	122.57	94.35	97.83	133.42	81.18	101.39	120.27	74.94
Merged-chr12-40464062-3	chr12	40463544	40464544	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	17991.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	20.59	12.9	12.95	19.57	10.26	9.65	12.67	9.29	13.74
Merged-chr17-28408080-3	chr17	28407561	28408561	+	894.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 8 of 10)	intron (NM_010220, intron 8 of 10)	-42845.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	55.49	42.39	37.92	64.77	48.98	72.34	67.6	103.47	23.73
Merged-chr6-116006959-3	chr6	116006456	116007456	+	894.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11951.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	31.46	24.88	20.35	26.99	18.66	22.51	17.96	7.96	16.86
Merged-chr4-115052825-3	chr4	115052339	115053339	+	894.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3587.0	NM_011527	21349.0	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	1.14	2.3	0.0	2.02	3.27	6.43	4.22	0.44	2.5
Merged-chr4-95213154-3	chr4	95212669	95213669	+	894.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160947.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	52.06	35.02	18.5	70.85	67.64	23.31	20.07	22.99	8.12
Merged-chr4-150156390-3	chr4	150155891	150156891	+	894.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085529, intron 4 of 11)	intron (NM_001085529, intron 4 of 11)	7419.0	NM_001085529	435818.0	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	-	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	8.58	3.23	4.62	13.49	2.8	4.02	11.62	5.75	9.99
Merged-chr6-34682236-2	chr6	34681741	34682741	+	894.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-27203.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.29	8.75	0.0	3.37	7.93	3.22	7.39	8.4	9.99
Merged-chr15-73176750-3	chr15	73176238	73177238	+	894.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	8209.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	44.62	27.65	20.35	37.11	16.33	19.29	32.74	28.3	9.37
Merged-chr4-88868241-6	chr4	88867716	88868716	+	894.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11985.0	NM_177348	230405.0	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	59.49	54.37	22.2	26.99	28.46	25.72	52.81	31.84	21.23
Merged-chr7-19303317-3	chr7	19302766	19303766	+	894.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008036, exon 4 of 4)	3' UTR (NM_008036, exon 4 of 4)	6779.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	9.15	3.69	1.85	9.45	3.27	2.41	8.45	4.42	1.25
Merged-chr11-6627966-3	chr11	6627453	6628453	+	894.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-1886.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	41.19	46.08	52.72	41.16	22.86	65.91	73.93	103.02	56.21
Merged-chr3-68976222-3	chr3	68975748	68976748	+	894.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026641, intron 5 of 19)	intron (NM_026641, intron 5 of 19)	28322.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	16.59	13.82	31.45	14.17	23.79	20.9	21.12	19.46	11.24
Merged-chr17-30182907-3	chr17	30182417	30183417	+	894.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356265, intron 4 of 5)	intron (NM_001356265, intron 4 of 5)	177878.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	19.45	10.14	10.17	17.54	13.53	8.84	21.12	15.48	16.24
Merged-chr14-71209206-2	chr14	71208713	71209713	+	894.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42060.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	14.87	11.06	13.87	15.52	7.46	12.86	1.06	3.98	1.25
Merged-chr2-156420920-3	chr2	156420518	156421518	+	894.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013510, exon 1 of 22)	5' UTR (NM_013510, exon 1 of 22)	109.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	26.89	23.04	1.85	26.99	23.33	36.97	53.87	44.22	16.86
Merged-chr4-139761404-2	chr4	139760895	139761895	+	894.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011039, intron 7 of 8)	intron (NM_011039, intron 7 of 8)	71573.0	NM_011039	18509.0	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	9.15	3.69	7.4	1.35	0.0	0.0	8.45	7.07	10.62
Merged-chr2-163710992-3	chr2	163710485	163711485	+	894.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	16948.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	22.31	18.43	22.2	18.89	11.2	8.04	15.84	8.4	27.48
Merged-chr13-33047635-3	chr13	33047124	33048124	+	894.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	20210.0	NM_011452	20706.0	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	25.17	38.25	36.07	22.94	25.66	24.92	39.08	34.05	18.11
Merged-chr15-53235450-1	chr15	53234950	53235950	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	110733.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	9.15	5.07	3.7	12.14	12.13	7.23	7.39	4.86	7.49
Merged-chr4-19576585-3	chr4	19576081	19577081	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025476, intron 1 of 9)	intron (NM_025476, intron 1 of 9)	1515.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	49.2	58.52	30.52	53.98	64.84	28.13	33.8	56.6	36.22
Merged-chr4-59372919-1	chr4	59372419	59373419	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	65714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	9.15	2.3	11.1	8.77	5.13	12.06	4.22	2.65	2.5
Merged-chr14-40924938-1	chr14	40924438	40925438	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	MER58A|DNA|hAT-Charlie	23271.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	31.46	41.01	30.52	30.36	35.92	36.97	31.69	30.95	27.48
Merged-chr9-95170285-3	chr9	95169801	95170801	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	236969.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	16.02	9.22	18.5	18.22	4.2	6.43	2.11	0.44	8.74
Merged-chr2-145746796-1	chr2	145746296	145747296	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-39320.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	4.58	1.84	3.7	8.77	8.86	12.06	3.17	6.19	2.5
Merged-chr10-98907285-1	chr10	98906785	98907785	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	13.16	20.27	9.25	11.47	12.13	19.29	31.69	13.27	17.49
Merged-chr3-27291600-2	chr3	27291092	27292092	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-25485.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.0	1.38	3.7	27.66	26.59	43.4	62.31	83.57	38.1
Merged-chr6-97929534-1	chr6	97929034	97930034	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001178049)	promoter-TSS (NM_001178049)	-283.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	4.0	5.53	1.85	4.72	7.46	2.41	6.34	3.1	2.5
Merged-chr2-166729809-3	chr2	166729305	166730305	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15973.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	101.25	62.21	34.22	153.16	111.03	71.54	137.3	120.71	43.72
Merged-chr15-81142356-3	chr15	81141848	81142848	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-37301.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	12.01	12.9	3.7	14.17	7.93	11.25	12.67	3.1	8.74
Merged-chr1-131126627-1	chr1	131126127	131127127	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11607.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	4.58	4.61	3.7	5.4	1.87	3.22	5.28	1.77	1.25
Merged-chr2-166694754-2	chr2	166694231	166695231	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	ORR1B1|LTR|ERVL-MaLR	19101.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	18.31	10.6	15.72	16.87	5.6	12.06	42.25	20.34	14.99
Merged-chr3-100531105-3	chr3	100530604	100531604	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-41912.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	22.31	28.11	31.45	20.92	20.53	4.02	59.15	67.21	58.08
Merged-chr11-100938323-3	chr11	100937818	100938818	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	1222.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	108.69	97.23	71.22	73.54	72.78	52.25	94.0	104.35	68.7
Merged-chr7-16990232-1	chr7	16989732	16990732	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4356.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	6.86	5.99	6.47	16.87	5.13	4.82	6.34	3.1	2.5
Merged-chr3-132865304-1	chr3	132864804	132865804	+	894.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	13292.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	3.43	0.0	0.0	5.4	0.93	2.41	3.17	0.88	3.75
Merged-chr19-29478820-3	chr19	29478296	29479296	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43191.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	31.46	32.25	25.9	35.09	29.39	25.72	55.98	41.12	21.23
Merged-chr6-54058970-3	chr6	54058484	54059484	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	19052.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	20.02	14.75	7.4	17.54	15.86	16.08	14.79	11.5	13.74
Merged-chr18-79993908-2	chr18	79993415	79994415	+	894.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-52980.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	28.03	54.37	46.25	51.28	39.65	49.03	69.71	67.65	51.84
Merged-chr8-115678349-3	chr8	115677849	115678849	+	893.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	28545.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	23.45	19.81	10.17	22.94	18.66	14.47	26.4	13.27	7.49
Merged-chr13-83041732-3	chr13	83041242	83042242	+	893.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-343409.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	13.73	5.99	4.62	16.87	6.06	12.86	12.67	8.84	10.62
Merged-chr7-34198513-3	chr7	34198012	34199012	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1842.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	12.59	12.9	5.55	8.1	7.46	10.45	14.79	6.63	8.12
Merged-chrX-98698892-3	chrX	98698388	98699388	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001313754, exon 14 of 26)	exon (NM_001313754, exon 14 of 26)	192137.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	25.17	16.13	11.1	12.14	11.2	12.86	21.12	27.41	16.24
Merged-chr2-35718244-3	chr2	35717760	35718760	+	893.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001602, intron 8 of 13)	intron (NM_001001602, intron 8 of 13)	21528.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	46.91	39.63	36.07	66.8	56.91	61.09	23.24	12.82	13.74
Merged-chr13-59879462-3	chr13	59878989	59879989	+	893.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56342.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	18.31	16.59	12.02	20.24	8.4	9.65	50.7	39.8	23.11
Merged-chr10-80295829-3	chr10	80295304	80296304	+	893.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	3295.0	NM_001310726	20054.0	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	6.86	3.69	0.0	8.77	0.93	6.43	2.11	3.54	2.5
Merged-chr17-47923757-3	chr17	47923300	47924300	+	893.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 1 of 16)	CpG	832.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	14.3	5.99	4.62	13.49	9.8	4.02	8.45	4.86	3.75
Merged-chr19-40629115-3	chr19	40628616	40629616	+	893.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	16750.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	45.76	44.24	39.77	43.18	41.52	53.05	39.08	40.68	36.22
Merged-chr9-59653565-2	chr9	59653064	59654064	+	893.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2804.0	NM_001253883	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	3.43	4.61	1.85	10.8	14.0	18.49	9.51	7.96	8.74
Merged-chr7-25436878-2	chr7	25436384	25437384	+	893.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-23998.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	8.01	13.82	11.1	8.77	7.46	24.11	25.35	7.96	28.1
Merged-chr19-53403968-3	chr19	53403490	53404490	+	893.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-13356.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	28.03	11.98	6.47	33.06	18.66	9.65	6.34	9.29	2.5
Merged-chr19-53568025-3	chr19	53567527	53568527	+	893.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-32369.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	20.02	11.52	3.7	21.59	25.66	12.86	8.45	0.88	3.12
Merged-chr19-17333984-3	chr19	17333478	17334478	+	893.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	5527.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	21.17	23.96	33.3	22.27	18.19	19.29	70.76	77.38	46.84
Merged-chr1-127248775-2	chr1	127248284	127249284	+	893.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	43798.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	15.45	5.99	11.1	22.27	18.66	20.09	14.79	7.52	16.24
Merged-chr11-59624474-2	chr11	59623971	59624971	+	893.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	11505.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	13.16	14.28	9.25	3.37	5.6	0.0	5.28	1.33	6.87
Merged-chr2-25628935-3	chr2	25628389	25629389	+	893.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-915.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	50.34	31.33	47.17	82.32	41.52	44.21	80.27	85.34	29.98
Merged-chr6-120972052-3	chr6	120971537	120972537	+	893.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 21 of 31)	intron (NM_001270475, intron 21 of 31)	13193.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	5.72	1.38	3.7	6.07	3.73	3.22	3.17	1.77	4.37
Merged-chr8-72320919-3	chr8	72320425	72321425	+	893.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	1863.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	127.57	171.87	134.12	148.44	104.03	67.52	137.3	175.1	149.89
Merged-chr9-45122489-3	chr9	45122001	45123001	+	893.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4625.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	9.72	17.05	12.95	13.49	5.6	6.43	8.45	4.86	12.49
Merged-chr1-34835840-3	chr1	34835326	34836326	+	893.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	7224.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	28.6	17.05	25.9	29.01	31.26	24.11	41.19	36.26	41.84
Merged-chr2-104095836-3	chr2	104095318	104096318	+	893.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111060)	promoter-TSS (NM_001111060)	17.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	15.45	5.99	7.4	13.49	14.93	18.49	5.28	3.54	6.25
Merged-chrX-142778884-2	chrX	142778380	142779380	+	893.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 4 of 8)	intron (NR_152447, intron 4 of 8)	39880.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	7.44	3.23	1.85	10.8	7.0	4.82	25.35	19.01	0.0
Merged-chr9-124275212-3	chr9	124274698	124275698	+	893.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37496.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	21.17	32.72	12.95	34.41	26.59	29.74	59.15	57.48	23.11
Merged-chr13-43478735-1	chr13	43478235	43479235	+	893.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019930, intron 1 of 13)	intron (NM_019930, intron 1 of 13)	2238.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	20.59	38.71	23.12	31.71	37.32	30.54	43.3	36.26	21.86
Merged-chr11-83530662-3	chr11	83530157	83531157	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013653)	promoter-TSS (NM_013653)	-139.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	16.59	3.23	11.1	12.14	3.73	3.22	8.45	7.96	5.0
Merged-chr8-24422269-3	chr8	24421745	24422745	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16701.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	18.31	33.64	20.35	45.88	57.85	37.78	66.54	91.53	52.46
Merged-chr14-77448213-1	chr14	77447713	77448713	+	893.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 5 of 19)	intron (NM_001253759, intron 5 of 19)	58655.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	2.29	1.38	1.85	4.05	5.6	3.22	5.28	7.52	8.74
Merged-chr11-120039832-3	chr11	120039378	120040378	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	1903.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	64.64	82.02	45.32	127.52	132.95	111.73	53.87	89.76	36.22
Merged-chr17-88284649-3	chr17	88284137	88285137	+	893.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156067.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	6.29	4.15	3.7	11.47	1.4	6.43	8.45	10.61	8.12
Merged-chr10-17589333-2	chr10	17588833	17589833	+	893.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133895.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	8.58	9.68	17.57	11.47	11.2	16.08	8.45	11.94	14.36
Merged-chr17-5445585-3	chr17	5445098	5446098	+	893.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5338.0	NM_027457	70544.0	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	15.45	9.22	10.17	18.89	11.2	6.43	13.73	4.42	8.74
Merged-chr6-16738103-2	chr6	16737585	16738585	+	893.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160356.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	8.01	9.22	9.25	7.42	7.93	7.23	2.11	8.84	8.74
Merged-chr9-110682551-3	chr9	110682054	110683054	+	893.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	MIR|SINE|MIR	26051.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	20.02	31.33	12.95	26.99	22.86	12.06	77.1	59.69	43.09
Merged-chr6-145302305-3	chr6	145301834	145302834	+	893.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	51782.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	128.71	117.04	94.35	107.28	91.9	118.16	161.6	218.87	124.91
Merged-chr1-184738098-3	chr1	184737585	184738585	+	893.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5592.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	2.86	2.76	0.92	4.72	1.4	4.02	7.39	1.77	0.0
Merged-chr3-133314693-3	chr3	133314196	133315196	+	893.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293641, intron 1 of 11)	intron (NM_001293641, intron 1 of 11)	4586.0	NM_001293641	74776.0	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	4.58	2.76	0.0	4.72	1.4	3.22	6.34	0.0	2.5
Merged-chr19-46045892-2	chr19	46045404	46046404	+	893.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113408)	promoter-TSS (NM_001113408)	-593.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	96.68	100.91	84.17	90.41	100.77	105.3	89.78	101.26	103.05
Merged-chr11-63906729-3	chr11	63906272	63907272	+	893.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	15512.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	51.48	57.6	51.8	28.34	27.52	32.15	51.75	51.73	53.08
Merged-chr19-32259256-3	chr19	32258754	32259754	+	893.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-48241.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.72	11.52	3.7	6.75	12.13	12.86	10.56	2.65	3.12
Merged-chr7-5083990-1	chr7	5083490	5084490	+	893.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010147, intron 3 of 11)	intron (NM_010147, intron 3 of 11)	3755.0	NM_001252454	13854.0	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	44.62	64.51	61.05	59.38	48.05	63.5	76.05	62.35	63.7
Merged-chr5-125380987-2	chr5	125380441	125381441	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9076.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	21.74	10.6	26.82	9.45	9.8	17.68	10.56	7.07	8.12
Merged-chr11-29879873-1	chr11	29879373	29880373	+	893.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-54205.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	8.58	8.75	3.7	10.8	4.67	4.02	5.28	7.96	5.0
Merged-chr4-3929784-3	chr4	3929283	3930283	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019969, intron 1 of 5)	intron (NM_019969, intron 1 of 5)	8622.0	NM_019969	56711.0	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	6.29	4.15	1.85	1.35	2.8	0.0	5.28	4.42	5.0
Merged-chr7-143041264-2	chr7	143040768	143041768	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11482.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	34.32	36.4	35.15	22.94	25.19	30.54	43.3	29.63	23.73
Merged-chr5-122911379-2	chr5	122910854	122911854	+	893.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-11004.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	7.44	2.3	6.47	5.4	3.27	5.63	3.17	2.21	5.0
Merged-chr8-90870539-3	chr8	90870047	90871047	+	893.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41712.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	24.6	9.68	29.6	67.47	34.52	49.83	57.03	31.84	18.74
Merged-chr2-91101564-3	chr2	91101071	91102071	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 2 of 4)	intron (NM_011355, intron 2 of 4)	4893.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	38.33	25.34	24.97	16.87	15.39	36.17	28.52	33.6	24.98
Merged-chr15-100119578-3	chr15	100119058	100120058	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-34838.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	12.59	6.91	2.77	13.49	6.06	4.82	16.9	5.75	4.37
Merged-chr4-130918918-3	chr4	130918380	130919380	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	RMER5|LTR|ERV1	5546.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	136.72	163.12	111.92	165.98	149.75	167.99	165.82	164.04	114.29
Merged-chr1-71938725-3	chr1	71938232	71939232	+	893.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50620.0	NR_027658	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	6.29	5.07	11.1	8.1	0.47	10.45	4.22	1.33	1.87
Merged-chr2-23005829-3	chr2	23005316	23006316	+	893.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	MLTR25A|LTR|ERVK	34425.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	65.79	81.1	70.3	70.17	55.51	57.07	83.44	82.69	53.08
Merged-chr2-148531747-3	chr2	148531171	148532171	+	893.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88136.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	54.35	52.99	36.07	103.23	63.91	90.02	60.2	58.37	53.08
Merged-chr4-9097200-3	chr4	9096676	9097676	+	893.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172117.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.58	4.15	0.0	5.4	5.6	4.82	7.39	1.77	5.0
Merged-chr11-4294692-1	chr11	4294192	4295192	+	893.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27896.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	7.44	1.84	3.7	6.75	2.33	1.61	7.39	2.65	1.25
Merged-chr2-157139055-3	chr2	157138555	157139555	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	61.78	54.83	52.72	41.83	35.45	45.01	47.53	65.0	39.97
Merged-chr9-121249945-3	chr9	121249461	121250461	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177589, intron 15 of 36)	intron (NM_177589, intron 15 of 36)	27211.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	6.86	4.61	17.57	10.12	8.4	12.06	25.35	9.73	12.49
Merged-chrX-36136550-3	chrX	36136068	36137068	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 4 of 10)	L2c|LINE|L2	24460.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	18.31	14.28	13.87	19.57	17.26	16.08	10.56	18.13	8.74
Merged-chr10-117776107-3	chr10	117775604	117776604	+	893.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 11 of 27)	MTC|LTR|ERVL-MaLR	16601.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	16.59	10.14	15.72	27.66	20.06	12.06	30.63	36.7	18.74
Merged-chr3-27345703-3	chr3	27345216	27346216	+	893.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25635.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	7.44	2.76	1.85	4.72	1.4	1.61	3.17	1.77	0.0
Merged-chr11-54628532-3	chr11	54628047	54629047	+	893.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	32401.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	72.08	94.0	29.6	68.15	44.78	38.58	55.98	72.96	62.45
Merged-chr7-122087296-2	chr7	122086802	122087802	+	893.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028177, exon 5 of 5)	3' UTR (NM_028177, exon 5 of 5)	14546.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	45.19	49.3	45.32	49.25	49.45	43.4	46.47	55.27	29.35
Merged-chr3-96219314-3	chr3	96218831	96219831	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178213)	promoter-TSS (NM_178213)	-585.0	NM_178213	621893.0		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	204.22	212.88	121.17	166.66	153.95	133.43	141.53	166.25	78.07
Merged-chr9-120034531-3	chr9	120034026	120035026	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10928.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	40.04	17.97	18.5	39.13	22.86	24.92	42.25	19.01	15.61
Merged-chr8-117259504-3	chr8	117259051	117260051	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	2532.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	29.75	30.41	37.0	24.29	15.39	32.96	47.53	25.65	33.72
Merged-chr11-49755435-1	chr11	49754935	49755935	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38720.0	NM_013529	14584.0	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	8.01	5.99	7.4	12.14	7.93	6.43	11.62	5.75	6.25
Merged-chr18-61323248-2	chr18	61322738	61323738	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133249, exon 2 of 12)	exon (NM_133249, exon 2 of 12)	74662.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	13.16	17.05	28.67	18.22	10.73	35.37	62.31	62.35	26.23
Merged-chr5-38598774-1	chr5	38598274	38599274	+	893.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-37179.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	1.14	0.92	1.85	1.35	0.0	1.61	19.01	12.38	16.24
Merged-chr18-56701015-2	chr18	56700502	56701502	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6811.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	9.15	3.23	8.32	10.12	5.13	14.47	24.29	14.15	19.36
Merged-chr13-64275780-3	chr13	64275269	64276269	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172587)	promoter-TSS (NM_172587)	-781.0	NM_172587	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	11.44	9.22	7.4	58.7	65.78	36.97	40.14	26.09	13.12
Merged-chr10-75055895-1	chr10	75055395	75056395	+	893.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5001.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	3.43	3.69	1.85	4.72	0.47	0.0	1.06	0.0	2.5
Merged-chr1-119917189-3	chr1	119916707	119917707	+	893.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4039.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	13.16	18.43	11.1	7.42	7.0	13.66	7.39	12.38	3.75
Merged-chr9-59476819-3	chr9	59476322	59477322	+	893.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045640)	TTS (NR_045640)	4919.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	40.62	62.67	42.55	42.51	32.19	24.11	50.7	56.6	18.74
Merged-chr15-25961845-2	chr15	25961339	25962339	+	893.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	13612.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	6.86	5.07	0.0	7.42	5.13	6.43	5.28	1.77	6.87
Merged-chr17-35045327-3	chr17	35044844	35045844	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146215, exon 4 of 25)	exon (NM_001146215, exon 4 of 25)	1278.0	NM_013600	17687.0	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	9.15	10.6	9.25	21.59	5.6	12.86	12.67	10.61	5.0
Merged-chr8-110902455-3	chr8	110901950	110902950	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172283)	promoter-TSS (NM_172283)	38.0	NM_172283	234730.0	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	13.73	9.68	5.55	10.12	7.0	11.25	17.96	15.48	13.74
Merged-chr15-82147800-3	chr15	82147291	82148291	+	893.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	CpG	522.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	70.36	55.29	35.15	93.79	81.64	57.87	113.01	83.13	22.48
Merged-chr17-53684159-2	chr17	53683649	53684649	+	893.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028232, intron 4 of 8)	intron (NM_028232, intron 4 of 8)	5166.0	NM_028232	72415.0	Mm.153202	NM_028232	ENSMUSG00000023940	Sgo1	3300001M08Rik|C81037|Sgol1	shugoshin 1	protein-coding	4.58	1.84	9.25	6.07	3.27	3.22	13.73	11.05	3.75
Merged-chr10-127742083-2	chr10	127741604	127742604	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198035, exon 2 of 2)	exon (NM_198035, exon 2 of 2)	2566.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	16.02	7.37	3.7	17.54	7.0	11.25	6.34	4.86	9.99
Merged-chr5-140611097-4	chr5	140610583	140611583	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	3742.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	22.31	39.63	38.85	58.03	54.11	75.56	72.88	29.63	38.1
Merged-chr11-88059252-3	chr11	88058756	88059756	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9023.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	6.29	4.61	1.85	4.05	2.8	7.23	3.17	2.65	2.5
Merged-chr2-132604089-1	chr2	132603589	132604589	+	893.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	intron (NR_033469, intron 2 of 3)	5893.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	22.88	48.84	52.72	39.13	42.45	63.5	17.96	19.46	24.98
Merged-chr16-58453151-2	chr16	58452661	58453661	+	893.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	44626.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	11.44	13.36	5.55	29.69	30.32	40.99	13.73	4.86	5.0
Merged-chr10-111083506-3	chr10	111082998	111083998	+	893.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73432.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	4.58	5.99	0.0	6.75	2.8	4.82	5.28	5.31	2.5
Merged-chr1-62703393-6	chr1	62702978	62703978	+	893.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010939, exon 1 of 16)	5' UTR (NM_010939, exon 1 of 16)	161.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	76.66	67.74	46.25	30.36	25.19	14.47	6.34	4.42	1.25
Merged-chr12-70969211-3	chr12	70968712	70969712	+	893.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5411.0	NM_001310595	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	149.31	230.85	109.14	130.22	138.55	116.55	173.21	262.21	124.91
Merged-chr9-106685218-1	chr9	106684718	106685718	+	893.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104459, intron 1 of 4)	intron (NR_104459, intron 1 of 4)	598.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	65.79	66.35	53.65	84.34	80.24	72.34	94.0	68.98	36.85
Merged-chr17-43576531-3	chr17	43576026	43577026	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	8075.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	25.74	34.1	32.37	47.9	41.05	56.27	24.29	24.76	28.73
Merged-chr1-149947808-3	chr1	149947305	149948305	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	13485.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	50.91	66.81	54.57	39.13	76.51	51.44	46.47	74.73	53.71
Merged-chrX-74429692-3	chrX	74429216	74430216	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010547)	promoter-TSS (NM_010547)	35.0	NM_010547	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	174.48	228.09	139.67	194.32	210.4	139.06	186.94	209.59	143.64
Merged-chr7-125553427-3	chr7	125553056	125554056	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	intron (NM_001008700, intron 1 of 10)	1274.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	94.96	77.41	74.0	35.76	30.32	36.17	138.36	119.39	71.2
Merged-chr15-89210288-2	chr15	89209780	89210780	+	893.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-1279.0	NM_026813	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	86.95	97.69	63.82	77.59	62.05	73.95	106.67	137.07	89.31
Merged-chr4-155802815-2	chr4	155802331	155803331	+	893.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025570)	promoter-TSS (NM_025570)	-47.0	NM_025570	66448.0	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	16.59	20.74	17.57	18.89	25.66	39.39	20.07	19.01	25.61
Merged-chr11-37043966-2	chr11	37043463	37044463	+	893.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99722.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	14.3	10.14	5.55	36.43	32.19	26.53	47.53	38.47	21.23
Merged-chr11-76529858-3	chr11	76529367	76530367	+	893.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-20448.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.58	9.22	18.5	24.96	21.93	11.25	15.84	10.17	7.49
Merged-chr11-70020890-3	chr11	70020394	70021394	+	893.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 1 of 19)	intron (NM_007864, intron 1 of 19)	2289.0	NM_007864	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	22.31	16.13	23.12	11.47	14.93	12.86	13.73	15.92	13.74
Merged-chr3-32508995-5	chr3	32508508	32509508	+	893.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1542.0	NM_001161818	67778.0	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	9.72	6.91	9.25	12.14	6.53	7.23	9.51	15.03	14.99
Merged-chr5-30849936-3	chr5	30849426	30850426	+	893.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-11881.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	80.09	107.36	94.35	84.34	92.84	83.59	78.16	93.3	60.58
Merged-chr7-99781557-3	chr7	99781051	99782051	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14387.0	NM_146356	258353.0	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	25.74	35.48	37.92	45.88	28.46	35.37	46.47	42.89	38.72
Merged-chr4-3482270-3	chr4	3481761	3482761	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54829.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	26.89	23.04	32.37	18.89	24.26	28.13	13.73	15.03	10.62
Merged-chr3-52625362-3	chr3	52624861	52625861	+	893.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108397.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	5.72	2.3	5.55	3.37	7.0	10.45	4.22	3.98	13.74
Merged-chr6-112778396-3	chr6	112777908	112778908	+	893.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 5 of 21)	MIR3|SINE|MIR	-81738.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	18.88	14.75	14.8	11.47	12.13	20.9	13.73	16.36	16.86
Merged-chr1-84465069-3	chr1	84464555	84465555	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-180410.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	8.58	12.9	17.57	10.12	13.53	11.25	14.79	8.4	6.87
Merged-chr5-122951737-3	chr5	122951205	122952205	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	37394.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	14.3	11.98	5.55	14.84	7.46	4.02	17.96	10.17	8.74
Merged-chr7-4087721-3	chr7	4087223	4088223	+	893.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033568, intron 6 of 8)	intron (NR_033568, intron 6 of 8)	-24519.0	NM_001302676	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	14.3	16.59	3.7	18.22	6.06	14.47	14.79	4.86	16.24
Merged-chr12-3301572-3	chr12	3301050	3302050	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	8419.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	19.45	28.57	16.65	14.84	16.33	14.47	20.07	11.5	14.99
Merged-chr8-61586786-1	chr8	61586286	61587286	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	B4|SINE|B4	4383.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.58	11.98	16.65	14.84	7.46	12.06	10.56	4.42	20.61
Merged-chr16-31949130-1	chr16	31948630	31949630	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027897)	promoter-TSS (NR_027897)	584.0	NM_026554	68092.0	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	205.37	170.03	149.84	215.91	199.67	165.58	210.18	188.36	109.92
Merged-chr3-84749439-1	chr3	84748939	84749939	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-66138.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.44	2.3	0.0	5.4	6.06	13.66	1.06	0.88	1.25
Merged-chr8-24938799-1	chr8	24938299	24939299	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153397, intron 1 of 21)	MTD|LTR|ERVL-MaLR	10005.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.57	1.84	3.7	1.35	4.67	4.82	1.06	2.65	6.87
Merged-chr9-53130602-1	chr9	53130102	53131102	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029936, intron 16 of 17)	MTD|LTR|ERVL-MaLR	117510.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.15	7.83	5.55	4.05	3.27	7.23	7.39	4.42	1.87
Merged-chr3-148981964-1	chr3	148981464	148982464	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27329.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	18.31	16.13	7.4	38.46	25.66	33.76	8.45	4.86	0.62
Merged-chr16-57353875-3	chr16	57353375	57354375	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	598.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	48.05	29.95	37.92	43.86	18.19	38.58	41.19	42.45	29.98
Merged-chr4-88186131-3	chr4	88185638	88186638	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 10 of 43)	intron (NM_001081184, intron 10 of 43)	64098.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	8.58	11.52	5.55	9.45	6.53	10.45	11.62	5.75	8.74
Merged-chr10-39449304-3	chr10	39448790	39449790	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	79491.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	29.75	26.26	32.37	43.86	24.72	42.6	16.9	15.03	24.36
Merged-chr12-57196849-2	chr12	57196331	57197331	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172577, intron 1 of 9)	CpG	641.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	8.58	3.23	0.0	6.75	5.13	4.82	6.34	3.1	2.5
Merged-chr13-63098266-1	chr13	63097766	63098766	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	133373.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.86	1.38	5.55	7.42	5.13	0.0	1.06	3.1	8.74
Merged-chr17-88132160-2	chr17	88131667	88132667	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6655.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	144.16	128.1	67.52	202.42	209.93	155.93	90.83	117.17	66.82
Merged-chr15-34306969-3	chr15	34306416	34307416	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358780, intron 1 of 18)	CpG	235.0	NM_016762	17181.0	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	2.29	1.38	1.85	2.02	1.87	0.0	0.0	2.21	1.25
Merged-chr3-81926056-3	chr3	81925541	81926541	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	5.15	8.29	1.85	6.07	3.73	4.82	4.22	2.65	1.25
Merged-chr18-4987411-2	chr18	4986906	4987906	+	893.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59183.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	12.59	9.22	24.05	9.45	10.73	15.27	9.51	3.54	24.98
Merged-chr3-117309093-1	chr3	117308593	117309593	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51783.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	2.86	8.29	1.85	3.37	5.13	6.43	4.22	4.42	5.0
Merged-chr19-57762700-1	chr19	57762200	57763200	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 24 of 28)	intron (NM_181415, intron 24 of 28)	151666.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	2.29	4.15	14.8	3.37	3.27	0.8	7.39	2.21	5.0
Merged-chr18-53850018-1	chr18	53849518	53850518	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	-12095.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.86	4.15	5.55	2.7	12.13	11.25	7.39	8.4	7.49
Merged-chr5-43722246-1	chr5	43721746	43722746	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 26 of 37)	intron (NM_001359906, intron 26 of 37)	59867.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	2.86	3.23	1.85	1.35	5.6	4.82	3.17	1.33	2.5
Merged-chr11-97357809-1	chr11	97357309	97358309	+	893.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4742.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	4.0	3.23	0.0	4.72	1.87	4.82	2.11	8.4	1.25
Merged-chr2-129911665-1	chr2	129911165	129912165	+	893.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100675.0	NM_009374	21818.0	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	5.72	5.07	5.55	35.76	22.39	26.53	4.22	3.54	5.62
Merged-chr2-120666764-1	chr2	120666264	120667264	+	893.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57169.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	8.01	3.69	14.8	2.7	4.2	1.61	3.17	3.1	6.25
Merged-chr1-139065439-3	chr1	139064927	139065927	+	892.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166501, intron 9 of 21)	intron (NM_001166501, intron 9 of 21)	87770.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	21.74	11.98	7.4	18.22	11.66	17.68	15.84	12.82	8.12
Merged-chr10-79852410-3	chr10	79851931	79852931	+	892.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_029447, exon 1 of 1)	non-coding (NR_029447, exon 1 of 1)	-2001.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	73.79	83.86	101.74	64.1	57.85	95.65	66.54	62.35	75.57
Merged-chr17-25874916-3	chr17	25874437	25875437	+	892.9404910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026686)	promoter-TSS (NM_026686)	-563.0	NM_026686	68347.0	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	113.84	135.93	95.27	97.16	92.37	81.18	125.69	149.45	71.2
Merged-chr3-115793514-3	chr3	115793047	115794047	+	892.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78492.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	15.45	3.69	1.85	7.42	6.53	8.04	7.39	6.19	2.5
Merged-chr4-12140288-3	chr4	12139790	12140790	+	892.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028226, exon 1 of 3)	5' UTR (NM_028226, exon 1 of 3)	173.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	29.17	19.35	11.1	29.01	29.39	16.88	43.3	31.84	6.25
Merged-chr5-74704589-3	chr5	74704088	74705088	+	892.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1685.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	8.58	5.99	2.77	70.17	59.25	60.28	6.34	5.75	5.62
Merged-chr5-43102199-3	chr5	43101702	43102702	+	892.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131261.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	26.31	8.29	12.95	27.66	10.26	16.88	38.02	13.27	16.24
Merged-chr10-99266241-5	chr10	99265739	99266739	+	892.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026268, exon 3 of 3)	exon (NM_026268, exon 3 of 3)	3008.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	124.14	146.53	54.57	87.04	90.04	68.32	117.24	91.97	78.07
Merged-chr19-47395654-3	chr19	47395152	47396152	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	68759.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	41.76	17.51	29.6	36.43	26.12	20.09	40.14	18.13	13.12
Merged-chr2-120432178-3	chr2	120431683	120432683	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172672, intron 10 of 23)	HAL1|LINE|L1	-28067.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	25.74	30.41	28.67	24.96	22.39	24.92	27.46	22.99	14.99
Merged-chr14-27042473-3	chr14	27041973	27042973	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	3472.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	8.01	2.76	6.47	0.0	4.2	6.43	1.06	0.88	2.5
Merged-chr16-48992952-3	chr16	48992439	48993439	+	892.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1173.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	81.8	69.58	48.1	76.92	65.31	38.58	73.93	99.49	32.48
Merged-chr8-108817398-1	chr8	108816898	108817898	+	892.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	Lx7|LINE|L1	102754.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	11.44	11.06	12.95	15.52	12.6	16.88	3.17	3.98	3.75
Merged-chr15-100604704-2	chr15	100604157	100605157	+	892.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4673.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	70.36	75.11	57.35	109.3	90.97	71.54	84.49	87.11	41.84
Merged-chr5-123895368-1	chr5	123894868	123895868	+	892.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-11907.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	4.58	2.76	5.55	1.35	2.8	1.61	7.39	7.52	2.5
Merged-chr12-40520047-3	chr12	40519583	40520583	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	74030.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	22.31	24.88	24.97	32.39	10.73	16.08	27.46	28.74	17.49
Merged-chr13-51837529-3	chr13	51837010	51838010	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9165.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	16.02	6.91	9.25	18.89	12.13	3.22	9.51	5.75	6.25
Merged-chr2-154687035-3	chr2	154686536	154687536	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	30010.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	19.45	11.52	9.25	18.89	16.33	20.9	12.67	22.55	6.87
Merged-chrX-107150811-3	chrX	107150309	107151309	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175442, intron 1 of 1)	intron (NM_175442, intron 1 of 1)	1194.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	103.54	177.86	68.45	98.51	146.48	76.36	109.84	197.21	79.94
Merged-chr5-72223103-3	chr5	72222604	72223604	+	892.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 1 of 22)	intron (NR_003966, intron 1 of 22)	19761.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	21.74	37.32	24.05	24.96	15.86	22.51	38.02	30.07	28.1
Merged-chr5-118095684-3	chr5	118095233	118096233	+	892.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	59725.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	13.73	9.68	4.62	16.87	9.8	14.47	8.45	6.63	2.5
Merged-chr16-15986458-4	chr16	15985925	15986925	+	892.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	99139.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	32.61	44.7	36.07	25.64	32.66	21.7	49.64	26.53	36.22
Merged-chr19-4059021-6	chr19	4058596	4059596	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362043, intron 1 of 5)	intron (NM_001362043, intron 1 of 5)	351.0	NM_144869	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	34.32	27.19	50.87	26.99	22.39	69.93	17.96	11.94	33.72
Merged-chr19-10949785-3	chr19	10949280	10950280	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023731)	promoter-TSS (NM_023731)	-514.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	106.97	76.49	85.1	88.39	55.51	94.85	76.05	75.61	67.45
Merged-chr13-24758513-3	chr13	24758026	24759026	+	892.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 2 of 6)	MTD|LTR|ERVL-MaLR	3411.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	102.4	99.53	86.02	81.64	88.64	70.73	107.73	133.53	84.94
Merged-chr8-120324796-3	chr8	120324334	120325334	+	892.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96604.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	7.44	7.37	5.55	6.07	4.67	4.82	10.56	2.21	2.5
Merged-chr17-15803646-3	chr17	15803167	15804167	+	892.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22919.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	10.87	11.52	7.4	12.14	6.53	1.61	11.62	11.94	13.74
Merged-chr6-5509448-1	chr6	5508948	5509948	+	892.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13170.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	105.83	115.2	121.17	123.47	186.14	152.72	47.53	47.75	81.81
Merged-chr10-44858891-3	chr10	44858388	44859388	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208326.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.86	3.69	5.55	10.12	5.13	3.22	4.22	5.75	3.12
Merged-chr8-46852556-3	chr8	46852030	46853030	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR67B|LTR|ERVL	112785.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	150.45	158.97	101.74	184.2	150.22	138.25	139.42	181.29	78.69
Merged-chr13-64248592-3	chr13	64248093	64249093	+	892.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045798)	promoter-TSS (NR_045798)	-55.0	NM_001122989	218294.0	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	26.89	17.05	35.15	47.9	40.12	43.4	53.87	33.6	23.11
Merged-chr8-122585547-1	chr8	122585047	122586047	+	892.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193645, intron 9 of 11)	intron (NM_001193645, intron 9 of 11)	-8640.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	4.58	3.23	3.7	4.72	3.73	3.22	4.22	2.21	0.0
Merged-chr1-88282442-2	chr1	88281890	88282890	+	892.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-4811.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	10.87	5.53	12.95	13.49	7.93	8.04	13.73	7.07	16.24
Merged-chr12-17712122-2	chr12	17711627	17712627	+	892.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21318.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	131.0	156.67	151.69	128.2	108.7	94.85	201.73	238.33	96.18
Merged-chr17-17883944-3	chr17	17883429	17884429	+	892.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013521)	promoter-TSS (NM_013521)	10.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	60.64	129.94	57.35	87.71	63.45	80.38	100.34	129.11	112.42
Merged-chr6-97394692-3	chr6	97394198	97395198	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	L1MEc|LINE|L1	64588.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	36.61	27.65	47.17	45.88	22.86	26.53	35.91	30.07	16.24
Merged-chr9-35199373-3	chr9	35198882	35199882	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177845, intron 1 of 6)	intron (NM_001177845, intron 1 of 6)	523.0	NM_001177847	117149.0	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	97.25	119.34	113.77	97.83	90.97	114.94	104.56	118.06	57.46
Merged-chr13-9261946-3	chr13	9261449	9262449	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14576.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	14.87	9.22	0.0	8.1	5.13	4.82	3.17	6.63	1.87
Merged-chr10-70181606-3	chr10	70181111	70182111	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 6 of 8)	intron (NM_001111121, intron 6 of 8)	-23053.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	21.74	16.59	11.1	13.49	10.73	6.43	26.4	10.61	8.74
Merged-chr1-64797411-3	chr1	64796916	64797916	+	892.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-59666.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	5.15	5.07	9.25	9.45	0.47	1.61	3.17	3.1	7.49
Merged-chr6-145115608-3	chr6	145115107	145116107	+	892.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281981)	promoter-TSS (NM_001281981)	-29.0	NM_001281980	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	15.45	12.9	12.95	19.57	12.6	12.86	61.26	54.39	30.6
Merged-chr9-14641878-3	chr9	14641357	14642357	+	892.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21165.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	7.44	10.14	7.4	6.07	9.33	6.43	3.17	4.42	6.25
Merged-chr10-10480954-3	chr10	10480453	10481453	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-8639.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	37.76	62.21	49.95	35.76	42.45	49.83	66.54	60.13	28.1
Merged-chr8-54507916-3	chr8	54507424	54508424	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22074.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	2.86	4.15	0.0	2.02	0.47	0.8	4.22	1.77	2.5
Merged-chr17-17619246-3	chr17	17618750	17619750	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	5239.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	57.78	88.93	54.57	45.21	57.85	69.93	136.25	179.52	75.57
Merged-chr6-38967400-3	chr6	38966922	38967922	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	ORR1D2|LTR|ERVL-MaLR	48436.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	61.21	50.23	53.65	76.24	49.45	71.54	98.23	89.76	51.84
Merged-chr11-118222560-3	chr11	118222055	118223055	+	892.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-9813.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	44.62	41.93	47.17	77.59	50.85	63.5	53.87	63.67	53.08
Merged-chr14-45661546-2	chr14	45661077	45662077	+	892.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3434.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	24.6	34.1	25.9	29.01	23.33	53.05	50.7	43.77	45.59
Merged-chr7-35051719-3	chr7	35051222	35052222	+	892.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	4844.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	77.8	83.4	63.82	97.83	62.98	49.83	70.76	79.59	46.22
Merged-chr3-62159243-3	chr3	62158758	62159758	+	892.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-179519.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.57	0.46	1.85	4.05	5.13	1.61	0.0	0.0	1.25
Merged-chr17-63402371-3	chr17	63401876	63402876	+	892.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	L1MDa|LINE|L1	-89403.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	21.74	23.04	7.4	16.19	12.6	28.13	11.62	15.48	3.12
Merged-chr6-83652218-2	chr6	83651717	83652717	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	intron (NM_016751, intron 4 of 6)	3899.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	72.65	87.09	54.57	89.74	107.76	110.12	122.52	104.35	40.59
Merged-chr2-79048885-3	chr2	79048394	79049394	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	179216.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.0	4.15	1.85	2.02	1.4	4.82	6.34	3.1	1.87
Merged-chr11-58126798-3	chr11	58126227	58127227	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166669, intron 24 of 27)	intron (NM_001166669, intron 24 of 27)	22498.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	126.42	102.75	61.97	138.32	101.7	116.55	35.91	30.95	18.11
Merged-chr12-91185787-1	chr12	91185287	91186287	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	75558.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	8.58	3.69	4.62	8.77	7.46	5.63	5.28	5.75	3.75
Merged-chr15-81934183-3	chr15	81933675	81934675	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2584.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	14.87	11.52	18.5	12.82	11.66	11.25	8.45	2.21	0.0
Merged-chr14-121798471-3	chr14	121797949	121798949	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134074)	promoter-TSS (NM_134074)	-715.0	NM_134074	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	20.02	11.98	9.25	29.69	35.92	12.06	14.79	17.24	5.0
Merged-chr10-43478087-3	chr10	43477576	43478576	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	36.04	17.51	19.42	66.12	48.98	37.78	48.58	42.45	20.61
Merged-chr8-46639216-3	chr8	46638745	46639745	+	892.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009810, exon 7 of 7)	3' UTR (NM_009810, exon 7 of 7)	21954.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	26.31	40.09	40.7	35.09	49.92	53.05	57.03	53.5	27.48
Merged-chr11-43348760-1	chr11	43348260	43349260	+	892.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25701.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	10.87	5.99	3.7	12.82	6.06	3.22	5.28	0.44	8.74
Merged-chr11-114906879-3	chr11	114906389	114907389	+	892.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	16848.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	150.45	122.57	73.07	155.86	106.83	137.45	82.38	109.22	86.18
Merged-chr14-19416674-5	chr14	19416210	19417210	+	892.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	185877.0	NM_001024706	432825.0	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	53.2	234.08	50.87	48.58	257.05	42.6	125.69	148.57	63.08
Merged-chr17-65663904-3	chr17	65663401	65664401	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-21697.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	15.45	22.12	8.32	35.76	34.06	40.19	22.18	19.9	24.98
Merged-chr13-37657505-3	chr13	37657010	37658010	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168528.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	69.79	79.25	25.9	78.27	59.71	47.42	49.64	50.85	30.6
Merged-chr10-51571395-3	chr10	51570894	51571894	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	19066.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	2.86	5.99	0.0	1.35	2.33	3.22	7.39	0.44	0.0
Merged-chr7-101466912-3	chr7	101466365	101467365	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-8511.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	15.45	9.22	5.55	37.78	17.73	25.72	3.17	2.21	1.25
Merged-chr4-155562939-3	chr4	155562442	155563442	+	892.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159637)	promoter-TSS (NM_001159637)	561.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	279.73	303.66	217.36	242.9	216.93	186.48	236.59	263.09	187.36
Merged-chr4-134543418-3	chr4	134542914	134543914	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 6 of 11)	intron (NM_029100, intron 6 of 11)	-8027.0	NM_029759	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	5.15	4.15	4.62	6.07	2.33	8.04	4.22	2.65	0.0
Merged-chr1-176835037-3	chr1	176834537	176835537	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	1096.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	98.97	87.55	75.85	82.32	66.71	79.58	97.17	109.22	63.7
Merged-chr7-29170258-5	chr7	29169741	29170741	+	892.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	31.0	NM_182694	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	9.72	12.44	28.67	15.52	5.6	7.23	123.57	114.52	74.94
Merged-chr11-50114536-2	chr11	50114031	50115031	+	892.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	B3|SINE|B2	-16829.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	5.15	5.07	0.0	2.7	5.13	4.82	4.22	4.42	4.37
Merged-chr16-30772987-3	chr16	30772479	30773479	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173256.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	10.87	11.52	5.55	13.49	12.6	21.7	11.62	11.94	18.74
Merged-chr15-58791350-3	chr15	58790867	58791867	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 3 of 6)	intron (NM_175212, intron 3 of 6)	32060.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	26.31	29.95	24.05	36.43	36.39	24.11	38.02	29.18	20.61
Merged-chr18-37998600-3	chr18	37998084	37999084	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205336, intron 1 of 32)	intron (NM_001205336, intron 1 of 32)	385.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	22.31	32.25	37.0	22.27	32.19	40.99	54.92	28.3	19.98
Merged-chr6-39507615-3	chr6	39507106	39508106	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 3 of 18)	intron (NM_172477, intron 3 of 18)	50228.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	7.44	14.28	14.8	23.62	21.46	32.96	12.67	14.15	13.74
Merged-chr7-19239612-3	chr7	19239125	19240125	+	892.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	intron (NM_207525, intron 1 of 1)	11236.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	10.3	4.15	11.1	7.42	3.73	5.63	4.22	2.65	6.87
Merged-chr17-83335382-3	chr17	83334887	83335887	+	892.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15544.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	8.58	6.45	9.25	13.49	4.2	4.82	5.28	7.07	2.5
Merged-chr2-118554567-3	chr2	118554062	118555062	+	892.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	8.58	2.3	4.62	4.05	3.73	1.61	91.89	85.78	38.72
Merged-chr2-170307688-3	chr2	170307189	170308189	+	892.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48672.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.86	7.37	2.77	10.12	6.53	3.22	9.51	4.86	6.25
Merged-chr5-103824862-3	chr5	103824351	103825351	+	892.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	70278.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	12.01	7.37	20.35	6.07	6.06	9.65	16.9	5.31	1.87
Merged-chr13-78163202-3	chr13	78162693	78163693	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	33256.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	6.29	3.23	7.4	7.42	2.8	1.61	7.39	6.63	8.74
Merged-chr6-135364557-3	chr6	135364034	135365034	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288628, intron 1 of 5)	intron (NM_001288628, intron 1 of 5)	1603.0	NM_001288628	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	6.86	3.23	1.85	20.92	14.93	14.47	4.22	5.31	1.25
Merged-chr11-73321276-2	chr11	73320775	73321775	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023113, intron 2 of 5)	RLTR45|LTR|ERVK	3362.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	10.87	5.53	3.7	9.45	5.13	9.65	11.62	6.19	5.0
Merged-chr4-86666030-3	chr4	86665567	86666567	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	MTC|LTR|ERVL-MaLR	3992.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	44.62	14.75	12.95	30.36	24.26	16.08	27.46	13.27	15.61
Merged-chr1-180199680-1	chr1	180199180	180200180	+	892.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3660.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	6.29	3.69	0.0	4.05	7.46	4.02	2.11	2.65	1.25
Merged-chr1-34843465-1	chr1	34842965	34843965	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001160235)	promoter-TSS (NM_001160235)	-415.0	NM_001160236	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	176.19	192.61	160.94	197.69	141.82	132.63	195.39	210.47	126.78
Merged-chr12-24735336-1	chr12	24734836	24735836	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	27082.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	2.86	2.76	3.7	0.67	2.8	6.43	0.0	0.0	1.25
Merged-chr4-134918628-3	chr4	134918127	134919127	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-3711.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	56.63	49.3	85.1	42.51	37.32	66.71	79.21	92.41	43.09
Merged-chr5-92511442-3	chr5	92510931	92511931	+	892.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-5774.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	10.3	16.13	14.8	14.17	4.2	25.72	23.24	18.57	21.23
Merged-chr3-60542552-1	chr3	60542052	60543052	+	892.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	41373.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	14.3	7.83	2.77	14.84	13.06	14.47	13.73	19.46	13.74
Merged-chr2-121179051-3	chr2	121178566	121179566	+	892.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110985, intron 6 of 18)	L1_Mur3|LINE|L1	7898.0	NM_001290824	51885.0	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	12.59	18.89	12.02	25.64	24.26	12.06	13.73	23.43	24.36
Merged-chr8-115597340-3	chr8	115596818	115597818	+	892.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109576.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	33.18	35.48	35.15	41.16	30.32	51.44	26.4	23.88	28.1
Merged-chr6-83599090-3	chr6	83598584	83599584	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26580.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	87.52	50.23	30.52	118.08	62.05	49.03	194.34	152.11	34.97
Merged-chr6-136543299-3	chr6	136542802	136543802	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	24451.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	19.45	17.97	12.95	16.87	14.0	9.65	40.14	40.68	18.74
Merged-chr6-114397873-3	chr6	114397355	114398355	+	892.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317126)	promoter-TSS (NM_001317126)	-81.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	18.88	21.66	3.7	13.49	10.26	16.88	7.39	4.42	1.87
Merged-chr18-78048603-3	chr18	78048100	78049100	+	892.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101038, exon 3 of 6)	exon (NM_001101038, exon 3 of 6)	8668.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	3.43	2.3	3.7	4.72	3.27	0.0	2.11	0.88	1.87
Merged-chr5-120527709-3	chr5	120527221	120528221	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 11 of 13)	intron (NM_001177595, intron 11 of 13)	16529.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	45.19	28.11	46.25	62.75	40.59	36.17	54.92	57.92	19.36
Merged-chr7-47122234-2	chr7	47121737	47122737	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013643, intron 1 of 13)	intron (NM_013643, intron 1 of 13)	10361.0	NM_001163565	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	5.15	4.15	1.85	5.4	2.8	3.22	6.34	7.07	5.0
Merged-chr8-6144796-2	chr8	6144307	6145307	+	892.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1039520.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	18.31	13.82	15.72	4.05	6.53	2.41	19.01	15.48	11.24
Merged-chr12-76614522-3	chr12	76614024	76615024	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 15 of 35)	intron (NM_013675, intron 15 of 35)	-66599.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	46.91	31.79	37.92	35.76	14.46	29.74	24.29	34.49	21.23
Merged-chr17-22817710-3	chr17	22817176	22818176	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030709)	promoter-TSS (NR_030709)	71.0	NR_030709	100042679.0	Mm.484007	NR_030709		Gm16386	EG545191|Gm21017	zinc finger protein 946 pseudogene	pseudo	25.17	17.51	16.65	25.64	20.06	34.56	19.01	16.8	13.12
Merged-chr19-23057067-3	chr19	23056558	23057558	+	892.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84168.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	24.6	21.66	21.27	43.86	45.72	61.09	83.44	70.3	51.84
Merged-chr11-118104179-3	chr11	118103677	118104677	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 19 of 80)	MER74A|LTR|ERVL	25042.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	9.72	5.53	1.85	10.8	10.26	5.63	8.45	4.86	5.0
Merged-chr4-53826763-5	chr4	53826209	53827209	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	664.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	91.53	106.44	61.97	129.55	117.09	90.83	115.12	91.53	28.1
Merged-chr14-115092278-3	chr14	115091820	115092820	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175500, exon 1 of 8)	5' UTR (NM_175500, exon 1 of 8)	105.0	NM_175500	103978.0	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	7.44	0.46	2.77	4.72	1.87	1.61	3.17	0.0	1.87
Merged-chr8-83064271-3	chr8	83063759	83064759	+	892.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-101093.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	17.16	21.66	19.42	35.09	18.19	32.15	96.11	114.52	73.69
Merged-chr13-92986071-2	chr13	92985575	92986575	+	892.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87229.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	21.17	15.21	11.1	6.07	4.2	6.43	98.23	63.67	36.85
Merged-chr10-128546438-3	chr10	128545877	128546877	+	892.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134003, intron 2 of 2)	intron (NM_134003, intron 2 of 2)	1367.0	NM_134003	103284.0	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	64.64	64.97	60.12	53.3	44.78	40.99	53.87	55.27	39.35
Merged-chr19-17250215-5	chr19	17249666	17250666	+	892.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89339.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	21.74	23.5	26.82	28.34	13.06	26.53	40.14	35.82	28.73
Merged-chr10-117432606-3	chr10	117432117	117433117	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14818.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	18.88	8.29	7.4	14.84	3.73	12.86	7.39	3.98	2.5
Merged-chr9-106858232-3	chr9	106857738	106858738	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001015507, exon 14 of 23)	exon (NM_001015507, exon 14 of 23)	28762.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	5.72	6.45	1.85	7.42	6.53	8.04	7.39	8.84	7.49
Merged-chr1-75254422-3	chr1	75253935	75254935	+	892.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359281, intron 12 of 22)	intron (NM_001359281, intron 12 of 22)	9336.0	NM_001359281	19275.0	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	4.58	1.38	0.0	6.07	5.13	4.82	2.11	1.33	2.5
Merged-chr15-74955361-6	chr15	74954839	74955839	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164036, exon 1 of 4)	5' UTR (NM_001164036, exon 1 of 4)	233.0	NM_001164040	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	76.66	75.57	94.35	56.0	48.05	97.26	118.29	116.73	58.71
Merged-chr12-81860253-3	chr12	81859752	81860752	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_018814, exon 1 of 36)	5' UTR (NM_018814, exon 1 of 36)	222.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	71.51	53.91	40.7	77.59	44.78	42.6	83.44	27.41	31.23
Merged-chr13-42576203-3	chr13	42575614	42576614	+	892.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104685.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.86	7.83	0.0	6.07	5.6	7.23	10.56	7.96	1.87
Merged-chr3-121967853-3	chr3	121967489	121968489	+	892.085693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356524, intron 1 of 22)	intron (NM_001356524, intron 1 of 22)	183.0	NM_001356524	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	5.15	4.61	5.55	8.77	7.0	8.04	10.56	7.52	2.5
Merged-chr17-72788219-2	chr17	72787720	72788720	+	892.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-48408.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	6.86	9.22	8.32	17.54	16.33	4.82	12.67	13.27	11.24
Merged-chr15-80054231-3	chr15	80053736	80054736	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24343.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	26.89	12.9	10.17	43.86	30.79	27.33	33.8	34.05	29.98
Merged-chr13-9776082-3	chr13	9775632	9776632	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10811.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	81.8	98.15	77.7	80.97	81.64	58.68	99.28	122.04	95.55
Merged-chr4-44014939-3	chr4	44014447	44015447	+	892.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	2297.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	41.19	58.98	50.87	43.86	41.52	34.56	63.37	52.18	48.09
Merged-chr14-47647132-3	chr14	47646621	47647621	+	892.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2190.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	24.03	42.39	30.52	21.59	8.86	16.88	51.75	58.81	31.23
Merged-chr3-96501578-3	chr3	96501083	96502083	+	892.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGTG)n|Simple_repeat|Simple_repeat	-23602.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	20.59	28.57	47.17	24.29	17.73	29.74	77.1	84.01	50.59
Merged-chr5-123139153-3	chr5	123138637	123139637	+	892.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3056.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	340.37	464.47	260.84	331.96	414.26	294.19	363.33	405.91	269.17
Merged-chr11-32650575-3	chr11	32650100	32651100	+	892.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	8045.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	34.32	40.09	28.67	37.78	29.39	39.39	45.42	50.41	52.46
Merged-chr5-105148239-3	chr5	105147743	105148743	+	892.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-8657.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	20.59	21.66	15.72	19.57	5.13	5.63	31.69	11.94	18.74
Merged-chr14-10430104-3	chr14	10429616	10430616	+	892.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	23342.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	28.03	48.38	18.5	37.11	37.32	41.8	21.12	28.74	45.59
Merged-chr5-115533796-3	chr5	115533265	115534265	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25702.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	92.1	58.98	63.82	58.03	34.52	69.13	59.15	48.2	34.35
Merged-chr14-104547452-2	chr14	104546959	104547959	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24793.0	NM_026047	72486.0	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	2.29	4.15	3.7	4.05	6.53	0.8	2.11	3.54	5.0
Merged-chr17-26231218-3	chr17	26230711	26231711	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	13031.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	127.0	124.87	98.97	182.85	141.35	139.86	167.93	237.0	90.56
Merged-chr1-61772211-1	chr1	61771711	61772711	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 2 of 22)	intron (NM_001081050, intron 2 of 22)	133387.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	7.44	10.14	2.77	10.12	6.53	4.02	1.06	2.21	3.12
Merged-chr2-50888119-1	chr2	50887619	50888619	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-21565.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	1.72	5.07	9.25	4.05	0.47	1.61	5.28	1.33	2.5
Merged-chr8-122160330-1	chr8	122159830	122160830	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121811.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	8.01	0.92	0.0	4.72	4.67	4.82	3.17	0.0	1.25
Merged-chr12-17777195-2	chr12	17776691	17777691	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	86382.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.86	8.29	11.1	16.19	10.26	20.9	27.46	21.22	18.74
Merged-chr2-171358359-1	chr2	171357859	171358859	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	604440.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	5.72	2.3	0.0	8.77	4.67	9.65	5.28	3.98	3.75
Merged-chr14-120360415-1	chr14	120359915	120360915	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53963.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	5.72	10.14	2.77	13.49	10.73	9.65	8.45	7.07	9.99
Merged-chr1-23915615-2	chr1	23915118	23916118	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	RSINE1|SINE|B4	-5882.0	NM_001290683	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	3.43	3.69	0.92	3.37	6.06	3.22	15.84	14.15	8.74
Merged-chr11-117117438-1	chr11	117116938	117117938	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	2266.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	74.94	84.78	61.05	70.85	74.17	86.01	116.18	146.36	42.47
Merged-chr9-104339206-1	chr9	104338706	104339706	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1484.0	NM_207668	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	5.72	5.07	3.7	6.07	5.13	3.22	9.51	0.88	1.25
Merged-chr12-3852800-1	chr12	3852300	3853300	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	9444.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	18.31	18.89	37.92	20.24	16.33	27.33	24.29	14.59	19.98
Merged-chr10-26695677-1	chr10	26695177	26696177	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21026.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.72	2.76	0.0	3.37	4.2	4.82	2.11	1.33	0.0
Merged-chr3-41905837-2	chr3	41905336	41906336	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	163218.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.0	2.76	1.85	12.82	11.66	24.11	8.45	3.54	6.25
Merged-chr2-3487434-1	chr2	3486934	3487934	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-12448.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	1.72	0.0	1.85	2.02	1.4	0.0	0.0	1.77	1.25
Merged-chrX-85290033-1	chrX	85289533	85290533	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40356.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	3.43	5.53	0.0	2.02	0.93	7.23	3.17	0.88	0.0
Merged-chr17-29032076-1	chr17	29031576	29032576	+	892.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013663)	promoter-TSS (NM_013663)	-584.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	353.53	397.2	223.84	339.38	388.6	246.76	301.01	382.47	207.34
Merged-chr10-4086029-1	chr10	4085529	4086529	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 21 of 27)	MTEa|LTR|ERVL-MaLR	112954.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	1.72	3.23	7.4	3.37	6.06	6.43	3.17	0.88	6.25
Merged-chr13-96437156-1	chr13	96436656	96437656	+	892.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 7 of 13)	MLT1H1|LTR|ERVL-MaLR	34004.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	5.15	3.69	10.17	5.4	11.66	16.08	15.84	10.17	8.12
Merged-chr7-82691618-3	chr7	82691139	82692139	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175317, intron 12 of 19)	intron (NM_175317, intron 12 of 19)	43025.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	12.01	11.06	24.97	14.17	9.8	13.66	14.79	19.9	18.11
Merged-chr1-191086299-1	chr1	191085799	191086799	+	892.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-12115.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	340.37	288.45	233.09	277.31	207.6	282.93	251.37	286.08	144.27
Merged-chr10-121498128-3	chr10	121497597	121498597	+	891.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21847.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	124.14	172.79	94.35	182.17	183.34	203.36	127.8	115.85	89.93
Merged-chr3-50443705-3	chr3	50443229	50444229	+	891.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-116.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	10.3	8.29	3.7	18.22	7.0	5.63	4.22	8.4	7.49
Merged-chr15-83040186-4	chr15	83039739	83040739	+	891.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6842.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	16.59	11.98	18.5	12.82	7.46	9.65	29.57	10.61	15.61
Merged-chr6-72164462-3	chr6	72163963	72164963	+	891.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41266.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	115.55	109.67	97.12	92.44	76.51	103.69	134.14	108.33	99.3
Merged-chr6-71235313-3	chr6	71234818	71235818	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009762, intron 4 of 8)	intron (NM_009762, intron 4 of 8)	26963.0	NM_001160127	12180.0	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	16.59	4.61	7.4	9.45	5.6	2.41	8.45	8.4	2.5
Merged-chr2-30496003-3	chr2	30495500	30496500	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21801.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	7.44	3.69	11.1	30.36	17.73	12.86	23.24	21.22	6.25
Merged-chr2-164520933-3	chr2	164520418	164521418	+	891.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23393.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	4.58	2.76	1.85	3.37	4.2	5.63	6.34	0.44	1.25
Merged-chr3-27461265-3	chr3	27460767	27461767	+	891.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 18 of 26)	intron (NM_001356953, intron 18 of 26)	89916.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	10.3	2.76	3.7	4.05	1.87	5.63	2.11	0.88	2.5
Merged-chr13-93355257-3	chr13	93354710	93355710	+	891.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147176, intron 4 of 9)	intron (NM_147176, intron 4 of 9)	47176.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	24.03	29.95	10.17	21.59	14.0	28.13	15.84	13.27	17.49
Merged-chr10-127535383-5	chr10	127534831	127535831	+	891.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	-772.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	17.16	6.45	5.55	10.8	5.13	3.22	7.39	4.86	3.75
Merged-chr11-43600115-3	chr11	43599623	43600623	+	891.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008375, intron 1 of 3)	intron (NM_008375, intron 1 of 3)	1439.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	9.72	8.29	16.65	4.72	5.6	5.63	16.9	12.82	9.99
Merged-chr11-6391752-3	chr11	6391240	6392240	+	891.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3385.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	32.04	30.41	23.12	22.94	13.53	12.06	23.24	15.92	7.49
Merged-chr2-84267003-1	chr2	84266503	84267503	+	891.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	158263.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.29	3.69	0.0	4.72	6.06	0.0	19.01	10.17	8.74
Merged-chr1-135730447-3	chr1	135729899	135730899	+	891.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007791, intron 1 of 5)	intron (NM_007791, intron 1 of 5)	1232.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	80.09	35.02	52.72	33.74	26.59	22.51	94.0	76.05	46.84
Merged-chr11-103374119-3	chr11	103373606	103374606	+	891.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-10414.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	61.78	47.0	60.12	80.29	71.84	62.7	63.37	62.35	66.2
Merged-chr3-8986066-3	chr3	8985576	8986576	+	891.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	18128.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	62.35	52.99	81.4	107.95	37.32	54.66	107.73	61.46	42.47
Merged-chr2-120424450-1	chr2	120423950	120424950	+	891.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172672, intron 6 of 23)	intron (NM_172672, intron 6 of 23)	-20334.0	NM_001110496	211499.0	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	84.66	90.31	61.97	131.57	118.49	78.77	128.85	115.41	79.32
Merged-chr11-107322925-3	chr11	107322427	107323427	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	MTEb|LTR|ERVL-MaLR	-133546.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	128.71	105.52	70.3	172.73	104.5	84.4	127.8	138.84	60.58
Merged-chr3-55227158-3	chr3	55226730	55227730	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15134.0	NM_019978	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	8.01	1.84	1.85	2.02	4.67	1.61	14.79	4.42	1.25
Merged-chr15-62351535-3	chr15	62351037	62352037	+	891.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132086.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.15	8.75	5.55	9.45	9.8	9.65	11.62	7.07	10.62
Merged-chr8-35792165-4	chr8	35791627	35792627	+	891.764282	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	34432.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	8.01	16.13	11.1	9.45	17.73	23.31	21.12	20.34	16.24
Merged-chr18-57085542-4	chr18	57084994	57085994	+	891.7604369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47596.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	17.16	11.52	3.7	6.75	5.13	6.43	6.34	3.98	3.75
Merged-chr15-12667927-2	chr15	12667433	12668433	+	891.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75377.0	NM_001081064	68070.0	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	18.88	13.82	24.97	10.12	10.26	15.27	3.17	2.65	1.25
Merged-chr6-114838118-3	chr6	114837621	114838621	+	891.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	MTD|LTR|ERVL-MaLR	83700.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	55.49	48.38	45.32	32.39	24.72	28.13	60.2	42.89	27.48
Merged-chr5-30135308-1	chr5	30134808	30135808	+	891.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178878, intron 7 of 19)	MTC|LTR|ERVL-MaLR	19672.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	9.72	7.37	16.65	22.27	13.06	15.27	11.62	10.17	5.0
Merged-chr13-73600370-3	chr13	73599875	73600875	+	891.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3627.0	NM_146047	218335.0	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	4.58	4.15	9.25	2.02	4.2	8.04	6.34	7.07	2.5
Merged-chr14-17967468-3	chr14	17966951	17967951	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 4 of 9)	intron (NM_001113417, intron 4 of 9)	-14193.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.72	5.53	2.77	4.05	6.53	13.66	3.17	5.31	6.87
Merged-chr16-76200452-3	chr16	76199951	76200951	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77838.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	14.87	10.6	4.62	12.82	8.86	4.82	8.45	7.07	1.87
Merged-chr7-45117719-3	chr7	45117206	45118206	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4051.0	NR_029560	387168.0		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	39.47	27.19	36.07	16.19	26.59	23.31	27.46	39.8	16.24
Merged-chr2-166012451-3	chr2	166011948	166012948	+	891.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	19811.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	45.76	46.08	49.95	34.41	31.26	49.83	40.14	37.14	49.96
Merged-chr9-47712667-6	chr9	47712245	47713245	+	891.671997	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	105463.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	54.35	83.86	58.27	72.19	63.45	60.28	88.72	114.96	76.82
Merged-chr1-40224988-3	chr1	40224490	40225490	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008362)	promoter-TSS (NM_008362)	-90.0	NM_008362	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	8.58	8.75	5.55	5.4	4.2	4.82	6.34	2.65	0.0
Merged-chr12-21543408-3	chr12	21542923	21543923	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-125987.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	47.48	39.63	24.05	39.81	41.52	31.35	2.11	0.0	9.37
Merged-chr10-77130747-3	chr10	77130243	77131243	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009929, intron 2 of 41)	intron (NM_009929, intron 2 of 41)	-17038.0	NM_001109991	12822.0	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	2.86	0.92	0.0	4.72	1.4	0.0	4.22	0.0	1.25
Merged-chr8-11138430-1	chr8	11137930	11138930	+	891.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-130000.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	6.86	5.53	0.0	3.37	2.8	4.02	3.17	2.65	4.37
Merged-chr16-91538703-2	chr16	91538215	91539215	+	891.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8379.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	37.76	31.33	18.5	43.18	27.52	48.23	116.18	122.04	66.82
Merged-chr2-102887256-3	chr2	102886769	102887769	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	14396.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	26.31	21.2	30.52	33.74	26.59	40.99	67.6	32.72	33.72
Merged-chr10-58523053-3	chr10	58522549	58523549	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 6 of 15)	L1Md_F2|LINE|L1	25112.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	4.0	8.75	12.95	14.84	13.53	6.43	20.07	20.78	6.25
Merged-chr2-133444933-3	chr2	133444433	133445433	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107226.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	9.72	7.37	9.25	12.82	15.39	9.65	4.22	4.42	8.74
Merged-chr19-42131319-3	chr19	42130822	42131822	+	891.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2329.0	NM_027106	69534.0	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	81.23	79.25	75.85	111.33	73.71	98.06	35.91	34.93	37.47
Merged-chr1-139467926-2	chr1	139467427	139468427	+	891.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009791, exon 8 of 28)	exon (NM_009791, exon 8 of 28)	13154.0	NM_009791	12316.0	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	abnormal spindle microtubule assembly	protein-coding	4.58	6.91	7.4	3.37	3.73	4.82	8.45	3.54	0.0
Merged-chr1-171554126-2	chr1	171553636	171554636	+	891.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5057.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	12.01	14.75	17.57	20.24	16.79	23.31	2.11	3.54	7.49
Merged-chr10-54052634-3	chr10	54052149	54053149	+	891.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	MTD|LTR|ERVL-MaLR	23147.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	8.58	6.45	3.7	13.49	3.73	1.61	4.22	2.65	7.49
Merged-chr1-37344584-1	chr1	37344084	37345084	+	891.625	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	-24633.0	NM_172971	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	9.72	6.91	5.55	26.31	16.79	15.27	5.28	6.19	2.5
Merged-chr10-14131219-3	chr10	14130719	14131719	+	891.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010437, exon 4 of 9)	exon (NM_010437, exon 4 of 9)	164840.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	21.74	27.65	32.37	12.82	17.26	33.76	43.3	20.34	26.23
Merged-chr17-69079510-3	chr17	69079018	69080018	+	891.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	3841.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	17.16	6.91	7.4	4.72	3.73	5.63	2.11	1.33	3.75
Merged-chr19-6062156-3	chr19	6061603	6062603	+	891.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028454)	TTS (NM_028454)	896.0	NM_013859	29805.0	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	82.38	88.01	76.77	88.39	68.58	87.61	77.1	62.79	73.07
Merged-chr6-94283876-3	chr6	94283318	94284318	+	891.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	99.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	16.02	10.14	1.85	28.34	27.06	40.99	5.28	3.54	3.75
Merged-chr2-153492656-3	chr2	153492136	153493136	+	891.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	37335.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	8.01	2.76	6.47	14.17	4.2	6.43	8.45	3.54	3.75
Merged-chr2-160021725-3	chr2	160021237	160022237	+	891.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040499, intron 1 of 3)	intron (NR_040499, intron 1 of 3)	5084.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	38.9	62.21	50.87	65.45	48.52	74.75	52.81	65.0	52.46
Merged-chr10-62549952-3	chr10	62549434	62550434	+	891.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22489.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.15	6.91	1.85	13.49	7.93	4.82	7.39	3.54	2.5
Merged-chr2-70877522-3	chr2	70877010	70878010	+	891.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52030.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	34.32	46.08	37.0	69.5	49.45	40.19	74.99	86.66	26.85
Merged-chr12-85169548-3	chr12	85169032	85170032	+	891.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271705, exon 5 of 7)	exon (NM_001271705, exon 5 of 7)	6450.0	NM_001271705	18654.0	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	14.87	6.45	3.7	9.45	8.4	8.04	4.22	6.19	6.87
Merged-chr12-116433915-3	chr12	116433406	116434406	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 16 of 28)	intron (NM_133762, intron 16 of 28)	28504.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	26.89	29.95	18.5	14.84	4.2	7.23	122.52	130.44	46.22
Merged-chr1-34479306-2	chr1	34478767	34479767	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19145.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	30.89	32.25	37.0	38.46	21.93	48.23	50.7	32.28	31.85
Merged-chr7-19676921-2	chr7	19676436	19677436	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277944, intron 1 of 4)	intron (NM_001277944, intron 1 of 4)	1005.0	NM_001277944	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	37.76	25.34	24.05	54.65	36.39	56.27	45.42	35.37	43.09
Merged-chr4-106316612-3	chr4	106316125	106317125	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183225, exon 1 of 68)	exon (NM_183225, exon 1 of 68)	412.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	104.69	88.93	106.37	162.61	115.69	118.96	122.52	65.44	43.72
Merged-chr8-116992783-2	chr8	116992276	116993276	+	891.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026572, intron 1 of 4)	intron (NM_026572, intron 1 of 4)	673.0	NM_026572	68133.0	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	51.48	35.94	32.37	55.33	40.12	53.85	38.02	37.14	21.23
Merged-chr2-156324878-1	chr2	156324378	156325378	+	891.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 2 of 12)	RMER21B|LTR|ERV1	-12174.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	65.21	71.88	57.35	9.45	12.13	13.66	94.0	126.02	56.21
Merged-chr10-111516294-4	chr10	111515731	111516731	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9945.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	14.3	13.82	10.17	19.57	11.66	10.45	11.62	7.96	8.74
Merged-chr11-84117590-3	chr11	84117086	84118086	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172562, intron 4 of 15)	ORR1D1|LTR|ERVL-MaLR	11982.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	20.59	27.65	19.42	47.23	39.65	28.13	60.2	57.92	30.6
Merged-chr6-97487403-2	chr6	97486921	97487921	+	891.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	399.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	205.37	212.88	136.89	221.31	215.99	200.14	269.33	313.5	184.24
Merged-chr4-105157451-5	chr4	105156931	105157931	+	891.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080555)	promoter-TSS (NM_080555)	84.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	68.65	93.54	119.32	69.5	63.45	76.36	86.61	68.09	53.08
Merged-chr1-121334487-3	chr1	121333989	121334989	+	891.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1900.0	NM_178082	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	3.43	3.69	3.7	22.27	14.0	15.27	9.51	19.01	6.25
Merged-chr14-52019012-3	chr14	52018509	52019509	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033805, intron 6 of 6)	intron (NM_001033805, intron 6 of 6)	704.0	NM_001253694	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	104.11	117.04	106.37	82.32	65.78	83.59	103.51	119.39	69.95
Merged-chr11-67526752-3	chr11	67526276	67527276	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6222.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	12.01	8.75	0.0	6.07	2.8	4.82	22.18	12.38	11.87
Merged-chr5-29892523-3	chr5	29892014	29893014	+	891.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120600.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	7.44	12.9	3.7	3.37	8.4	6.43	4.22	6.63	2.5
Merged-chr18-6135255-2	chr18	6134764	6135764	+	891.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039692, intron 1 of 18)	intron (NM_001039692, intron 1 of 18)	834.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	143.59	169.11	118.39	103.23	109.63	103.69	147.87	179.96	96.8
Merged-chr15-50869638-3	chr15	50869153	50870153	+	891.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	CpG	19396.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	97.25	134.09	55.5	91.76	97.5	110.12	66.54	67.65	53.08
Merged-chr18-5401696-3	chr18	5401203	5402203	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66896.0	NM_001360447	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	7.44	11.06	9.25	14.17	7.46	24.11	11.62	7.07	5.0
Merged-chr10-118121248-3	chr10	118120763	118121763	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20524.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	7.44	11.06	9.25	16.19	7.0	11.25	13.73	2.65	9.99
Merged-chr1-92179788-3	chr1	92179299	92180299	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 1 of 26)	CpG	542.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	82.38	70.5	70.3	93.11	55.51	61.09	107.73	44.66	33.1
Merged-chr18-82751392-3	chr18	82750926	82751926	+	891.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7613.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	4.58	1.38	3.7	5.4	0.93	4.82	3.17	2.65	1.25
Merged-chr19-11589376-3	chr19	11588854	11589854	+	891.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	15450.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	30.89	29.03	22.2	32.39	27.52	39.39	17.96	18.57	29.35
Merged-chr10-126987427-3	chr10	126986922	126987922	+	891.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	intron (NM_001113470, intron 1 of 7)	-8108.0	NR_029803	723962.0		NR_029803	ENSMUSG00000065430	Mir26a-2	Mirn26a-2|mir-26a-2	microRNA 26a-2	ncRNA	24.03	33.64	35.15	25.64	23.79	38.58	28.52	38.03	29.98
Merged-chr3-27233885-2	chr3	27233371	27234371	+	891.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	50867.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	27.46	17.51	14.8	39.13	27.99	24.11	35.91	43.33	28.1
Merged-chr7-122464099-2	chr7	122463605	122464605	+	891.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	Lx8b|LINE|L1	174980.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	10.87	4.15	7.4	21.59	9.33	15.27	14.79	8.84	18.74
Merged-chr19-5794765-3	chr19	5794288	5795288	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002847)	TTS (NR_002847)	1193.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	86.38	35.94	22.2	48.58	25.19	49.83	15.84	20.78	18.74
Merged-chr1-150143729-3	chr1	150143236	150144236	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	21212.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.57	2.3	1.85	5.4	1.87	6.43	3.17	3.54	3.75
Merged-chr5-105545192-3	chr5	105544677	105545677	+	891.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	RLTR17|LTR|ERVK	25706.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	12.01	9.22	22.2	6.07	6.53	9.65	11.62	14.59	9.99
Merged-chr8-123280901-1	chr8	123280401	123281401	+	891.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 30 of 42)	intron (NM_016925, intron 30 of 42)	-26679.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	10.3	5.99	12.95	4.05	4.2	4.82	57.03	60.13	44.34
Merged-chr2-120623139-1	chr2	120622639	120623639	+	891.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13544.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	8.01	9.68	5.55	7.42	5.6	4.82	1.06	4.42	3.75
Merged-chr19-6987575-4	chr19	6987024	6988024	+	891.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357001)	TTS (NM_001357001)	127.0	NM_001185164	22340.0	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	65.79	18.89	36.07	78.27	20.99	30.54	33.8	11.94	16.24
Merged-chr14-103186836-3	chr14	103186330	103187330	+	891.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 49 of 84)	Lx6|LINE|L1	-87264.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	19.45	20.27	12.95	22.27	22.39	14.47	15.84	26.53	11.24
Merged-chr6-43383538-3	chr6	43383037	43384037	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-58892.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	16.02	21.2	11.1	18.89	15.39	20.09	21.12	11.94	9.37
Merged-chr13-107809301-3	chr13	107808846	107809846	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	80718.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	75.51	57.6	36.07	72.19	42.45	26.53	39.08	49.08	14.99
Merged-chr4-55813002-3	chr4	55812509	55813509	+	891.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-280534.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.44	7.37	5.55	11.47	9.8	5.63	5.28	11.5	3.75
Merged-chr19-45585036-2	chr19	45584534	45585534	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 6 of 8)	intron (NM_013907, intron 6 of 8)	24449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	8.58	2.76	5.55	6.75	1.4	6.43	4.22	5.31	5.0
Merged-chr4-102290442-2	chr4	102289945	102290945	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	35506.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	15.45	14.28	24.05	6.07	5.13	6.43	8.45	6.63	6.25
Merged-chr11-80089482-3	chr11	80089027	80090027	+	891.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001029856, exon 1 of 23)	5' UTR (NM_001029856, exon 1 of 23)	127.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	69.79	78.33	86.95	58.7	66.71	60.28	79.21	75.61	44.97
Merged-chr17-5804541-3	chr17	5804039	5805039	+	891.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5049.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	17.73	11.06	11.1	16.19	14.46	6.43	10.56	7.52	9.99
Merged-chr17-33564832-3	chr17	33564331	33565331	+	891.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	9124.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	57.21	65.43	52.72	47.9	64.84	73.95	62.31	72.52	56.83
Merged-chr8-40703115-1	chr8	40702615	40703615	+	891.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	28038.0	NM_010086	13526.0	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	2.29	3.69	5.55	2.7	3.73	1.61	4.22	3.1	2.5
Merged-chr5-64209994-1	chr5	64209494	64210494	+	891.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-20363.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	21.74	15.67	20.35	51.28	31.72	61.09	36.97	23.43	21.23
Merged-chr13-96510784-2	chr13	96510300	96511300	+	891.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_144624, intron 2 of 10)	intron (NR_144624, intron 2 of 10)	8387.0	NR_144623	27015.0	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	6.86	8.75	7.4	22.27	13.53	11.25	1.06	3.98	2.5
Merged-chr11-47276885-3	chr11	47276383	47277383	+	891.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	102419.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	7.44	3.69	5.55	4.72	5.13	12.06	1.06	5.75	11.87
Merged-chr16-52932167-3	chr16	52931671	52932671	+	891.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116427.0	NR_040495	73820.0	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	15.45	4.15	8.32	8.77	10.73	8.04	6.34	3.54	3.12
Merged-chr7-80059350-3	chr7	80058844	80059844	+	891.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	15913.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	69.22	63.59	36.07	70.17	37.32	62.7	45.42	28.3	28.1
Merged-chr5-114772951-4	chr5	114772359	114773359	+	891.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027872)	TTS (NR_027872)	632.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	268.29	178.32	237.71	244.25	186.14	197.73	226.02	149.01	166.75
Merged-chr2-34778349-6	chr2	34777859	34778859	+	891.0729980000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145522)	TTS (NM_145522)	6269.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	21.17	8.75	18.5	13.49	5.13	23.31	9.51	7.96	11.87
Merged-chr13-110907740-3	chr13	110907270	110908270	+	891.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131193, exon 5 of 5)	non-coding (NR_131193, exon 5 of 5)	-3924.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	6.29	2.76	5.55	8.1	7.93	9.65	6.34	7.52	3.75
Merged-chr10-66807777-2	chr10	66807293	66808293	+	891.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	112591.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	1.72	2.76	0.0	2.02	0.47	0.0	0.0	0.0	1.25
Merged-chr12-100791674-3	chr12	100791187	100792187	+	891.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361017, intron 3 of 14)	intron (NM_001361017, intron 3 of 14)	12630.0	NM_145448	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	8.01	11.06	9.25	4.72	6.53	6.43	9.51	4.42	7.49
Merged-chr17-71192181-3	chr17	71191670	71192670	+	891.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	L1MC3|LINE|L1	8192.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	41.76	40.09	30.52	42.51	33.12	30.54	27.46	36.7	34.35
Merged-chr9-66680344-1	chr9	66679844	66680844	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33342.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	4.0	2.3	6.47	3.37	8.86	4.82	3.17	5.75	5.0
Merged-chr6-113748408-3	chr6	113747895	113748895	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347365, exon 24 of 24)	3' UTR (NM_001347365, exon 24 of 24)	-7714.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	66.36	59.44	38.85	55.33	51.78	72.34	125.69	154.32	65.58
Merged-chr5-8355773-1	chr5	8355273	8356273	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	RSINE1|SINE|B4	12387.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	13.73	19.81	3.7	8.1	6.06	4.82	3.17	8.84	1.25
Merged-chr2-145884512-1	chr2	145884012	145885012	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18729.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	25.17	30.87	46.25	32.39	45.72	37.78	31.69	34.93	31.85
Merged-chr10-38623612-1	chr10	38623112	38624112	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	198167.0	NM_001177783	215919.0	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	11.44	8.29	22.2	9.45	8.4	12.06	10.56	13.71	5.62
Merged-chr1-182368526-1	chr1	182368026	182369026	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26920.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	5.72	1.38	3.7	10.12	8.86	6.43	4.22	7.07	3.75
Merged-chr11-94585991-1	chr11	94585491	94586491	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	intron (NM_153807, intron 1 of 15)	15795.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	10.87	9.68	12.02	16.87	8.86	8.04	17.96	19.9	6.25
Merged-chr2-84387506-2	chr2	84387013	84388013	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	37753.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	30.32	50.69	31.45	47.9	63.91	44.21	100.34	102.14	63.08
Merged-chr17-86744868-1	chr17	86744368	86745368	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8996.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.72	3.69	0.0	8.1	8.86	12.86	4.22	0.88	2.5
Merged-chr1-151104965-1	chr1	151104465	151105465	+	891.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-33069.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	25.74	22.58	28.67	24.29	15.39	29.74	30.63	35.82	26.85
Merged-chr18-11054379-1	chr18	11053879	11054879	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010258, exon 2 of 7)	exon (NM_010258, exon 2 of 7)	-1812.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	1.14	2.3	4.62	0.0	0.0	4.82	1.06	0.0	0.0
Merged-chr8-117330042-1	chr8	117329542	117330542	+	891.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-19128.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	4.0	5.07	2.77	8.1	2.33	4.02	13.73	3.54	6.25
Merged-chr16-55967033-3	chr16	55966537	55967537	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024218, intron 2 of 5)	intron (NM_024218, intron 2 of 5)	762.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	135.0	146.99	58.27	138.32	138.09	106.1	120.41	118.94	75.57
Merged-chr12-117558135-1	chr12	117557635	117558635	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175930, intron 3 of 27)	intron (NM_175930, intron 3 of 27)	41656.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.15	6.45	5.55	8.77	8.4	4.82	16.9	13.71	12.49
Merged-chr8-57577460-1	chr8	57576960	57577960	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	65617.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	10.87	7.83	7.4	4.72	2.8	1.61	6.34	7.07	4.37
Merged-chr8-39637612-1	chr8	39637112	39638112	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	5066.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	19.45	19.81	15.72	37.11	27.52	31.35	39.08	18.57	39.97
Merged-chr12-76596451-1	chr12	76595951	76596951	+	891.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-48526.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.86	3.23	3.7	3.37	2.8	4.82	3.17	0.44	0.0
Merged-chr3-146784417-3	chr3	146783939	146784939	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	-3023.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	40.62	26.73	7.4	53.98	21.93	31.35	34.85	26.53	16.24
Merged-chr2-167692273-4	chr2	167691772	167692772	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1095.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	102.97	122.57	135.04	125.5	127.82	132.63	118.29	131.32	104.92
Merged-chr4-59544914-3	chr4	59544416	59545416	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	4448.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	32.04	41.01	15.72	35.09	29.86	25.72	32.74	26.97	24.36
Merged-chr9-66601204-3	chr9	66600692	66601692	+	891.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8077.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	61.78	119.34	73.07	58.03	70.91	92.44	60.2	70.75	65.58
Merged-chr2-80045136-2	chr2	80044644	80045644	+	890.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	LTR81A|LTR|Gypsy	-6242.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	2.29	2.3	0.0	2.02	1.87	5.63	3.17	7.52	1.25
Merged-chr13-63240013-3	chr13	63239516	63240516	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-13.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	65.21	43.77	45.32	76.92	99.37	57.07	57.03	47.75	24.36
Merged-chrX-71150666-3	chrX	71150186	71151186	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 5 of 6)	intron (NM_001081354, intron 5 of 6)	-60081.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	20.59	12.9	11.1	16.19	13.53	22.51	13.73	10.17	9.99
Merged-chr8-4214553-3	chr8	4214056	4215056	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	2756.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	2.86	2.3	5.55	0.67	1.4	3.22	2.11	0.44	3.75
Merged-chr12-79122993-3	chr12	79122496	79123496	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7792.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	5.72	5.99	0.0	2.02	4.2	0.8	4.22	1.33	1.25
Merged-chr7-66134372-3	chr7	66133876	66134876	+	890.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	24861.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	16.59	47.92	24.05	37.78	24.26	44.21	31.69	30.95	18.11
Merged-chr9-15010467-3	chr9	15009975	15010975	+	890.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	35003.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	16.02	18.89	27.75	29.69	15.39	12.86	17.96	15.03	13.74
Merged-chr2-6454933-3	chr2	6454429	6455429	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102193.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	10.3	14.28	7.4	23.62	15.39	1.61	14.79	13.27	3.75
Merged-chr17-27565333-3	chr17	27564853	27565853	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002895, intron 1 of 4)	intron (NM_001002895, intron 1 of 4)	374.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	125.28	91.7	92.5	118.08	106.83	115.75	97.17	109.22	56.21
Merged-chr16-78182337-3	chr16	78181827	78182827	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73127.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	14.87	3.69	5.55	6.07	4.2	6.43	7.39	5.31	3.75
Merged-chr17-34143650-3	chr17	34143142	34144142	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1774.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	56.63	36.86	43.47	54.65	21.46	46.62	49.64	43.77	49.96
Merged-chr4-149763534-3	chr4	149763031	149764031	+	890.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	URR1B|DNA|hAT-Charlie	10736.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	12.59	9.68	11.1	12.82	7.46	6.43	23.24	19.46	14.36
Merged-chr3-96256134-3	chr3	96255644	96256644	+	890.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7173.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	21.17	16.59	19.42	17.54	23.79	29.74	22.18	27.41	30.6
Merged-chr14-105297400-2	chr14	105296879	105297879	+	890.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	38706.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	46.91	85.25	51.8	22.27	31.72	33.76	10.56	9.73	5.0
Merged-chrX-53752597-3	chrX	53752107	53753107	+	890.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001200013, intron 1 of 8)	intron (NM_001200013, intron 1 of 8)	5224.0	NM_001200013	75514.0	Mm.116929	NM_001200013	ENSMUSG00000054727	1700013H16Rik	Slx2|Xlr6	RIKEN cDNA 1700013H16 gene	protein-coding	8.58	16.13	5.55	5.4	2.8	11.25	8.45	7.96	6.87
Merged-chr9-120776749-3	chr9	120776238	120777238	+	890.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138512.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	18.31	22.12	12.02	24.96	13.53	13.66	5.28	2.21	3.75
Merged-chrX-36112348-6	chrX	36111816	36112816	+	890.819458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	CpG	208.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	112.12	85.25	70.3	92.44	39.19	69.13	88.72	76.94	49.96
Merged-chr3-136703077-3	chr3	136702563	136703563	+	890.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	32997.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	21.74	27.65	21.27	25.64	16.33	22.51	25.35	22.11	12.49
Merged-chr10-122735494-3	chr10	122734930	122735930	+	890.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56115.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	62.93	47.0	76.77	45.88	41.52	68.32	89.78	95.51	81.81
Merged-chr17-34248920-2	chr17	34248421	34249421	+	890.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10016.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	5.72	3.69	2.77	7.42	1.4	4.82	13.73	15.92	0.0
Merged-chr6-89045799-2	chr6	89045275	89046275	+	890.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50335.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	8.58	7.37	1.85	10.12	9.8	3.22	2.11	3.98	3.75
Merged-chr1-54438976-3	chr1	54438479	54439479	+	890.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	47.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	34.9	41.01	31.45	35.76	33.12	33.76	38.02	35.82	26.23
Merged-chr19-29828744-3	chr19	29828255	29829255	+	890.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-15781.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	14.3	6.91	5.55	8.77	6.53	6.43	24.29	22.11	3.75
Merged-chr6-115470026-3	chr6	115469516	115470516	+	890.677734	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47950.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	65.79	60.36	59.2	74.22	45.72	54.66	51.75	49.08	31.85
Merged-chr8-35678010-1	chr8	35677510	35678510	+	890.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-88990.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	14.87	10.6	23.12	26.31	17.73	25.72	9.51	7.96	12.49
Merged-chr10-61375305-3	chr10	61374797	61375797	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	8226.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	16.59	17.05	23.12	8.77	17.26	19.29	25.35	18.13	23.73
Merged-chr5-98320004-1	chr5	98319504	98320504	+	890.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9300.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	1.72	5.07	3.7	11.47	7.0	0.0	6.34	5.75	1.25
Merged-chr10-45276673-3	chr10	45276174	45277174	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12631.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	15.45	30.87	5.55	89.74	80.71	65.11	71.82	73.4	55.58
Merged-chr12-98832603-1	chr12	98832103	98833103	+	890.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	MTD|LTR|ERVL-MaLR	61581.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	3.43	5.07	0.0	5.4	2.33	2.41	5.28	4.86	11.87
Merged-chr3-103790962-2	chr3	103790434	103791434	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	CpG	341.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	222.53	226.71	145.22	184.87	126.89	114.94	190.11	128.23	111.17
Merged-chr17-72961055-3	chr17	72960561	72961561	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	42756.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	8.01	11.52	9.25	13.49	6.53	14.47	6.34	6.63	3.75
Merged-chr9-90198116-3	chr9	90197625	90198625	+	890.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003911, intron 23 of 23)	intron (NM_001003911, intron 23 of 23)	35147.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	11.44	8.75	7.4	6.07	5.13	3.22	14.79	4.86	8.74
Merged-chr17-28226217-3	chr17	28225718	28226718	+	890.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027185, exon 9 of 11)	exon (NM_027185, exon 9 of 11)	-6536.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	4.58	3.69	1.85	6.07	3.73	1.61	1.06	4.42	1.25
Merged-chr2-58566797-3	chr2	58566290	58567290	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110205)	promoter-TSS (NM_001110205)	38.0	NM_001110205	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	18.31	13.36	36.07	19.57	22.39	32.96	28.52	9.73	25.61
Merged-chr11-32224971-3	chr11	32224478	32225478	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1527.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	5.72	9.68	16.65	7.42	4.67	16.88	11.62	0.88	1.87
Merged-chr5-90900928-3	chr5	90900437	90901437	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2962.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	12.59	14.75	11.1	22.94	10.73	9.65	17.96	7.96	6.87
Merged-chr13-35741961-3	chr13	35741454	35742454	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123386, intron 1 of 6)	CpG	552.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	65.79	34.1	66.6	57.35	30.79	30.54	65.48	30.51	23.73
Merged-chr12-99526955-3	chr12	99526441	99527441	+	890.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36900.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	9.72	12.9	4.62	6.75	2.8	10.45	13.73	13.71	10.62
Merged-chr10-31609410-2	chr10	31608950	31609950	+	890.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001146349, exon 1 of 6)	5' UTR (NM_001146349, exon 1 of 6)	275.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	26.31	6.91	5.55	23.62	13.06	7.23	8.45	2.21	2.5
Merged-chr1-43139787-3	chr1	43139278	43140278	+	890.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010212, intron 3 of 5)	intron (NM_010212, intron 3 of 5)	24183.0	NM_010212	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	3.43	4.61	1.85	6.07	3.27	0.0	2.11	0.0	4.37
Merged-chr1-161728782-3	chr1	161728277	161729277	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59718.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	14.3	8.29	1.85	2.7	1.4	4.82	2.11	3.1	1.25
Merged-chr6-86570972-3	chr6	86570481	86571481	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43580.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	11.44	3.23	11.1	12.14	5.6	17.68	9.51	7.96	6.87
Merged-chr1-9826050-3	chr1	9825535	9826535	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	-22246.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	13.73	8.29	12.95	16.87	11.2	16.08	30.63	10.61	8.74
Merged-chr13-22044307-3	chr13	22043761	22044761	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178198)	TTS (NM_178198)	1031.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	24.03	30.41	22.2	22.27	17.73	19.29	23.24	49.52	44.34
Merged-chr10-20005685-3	chr10	20005201	20006201	+	890.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 2 of 29)	L1ME3Cz|LINE|L1	71175.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	30.32	38.25	22.2	20.24	21.46	5.63	24.29	32.28	20.61
Merged-chr17-69075691-3	chr17	69075187	69076187	+	890.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355732)	promoter-TSS (NM_001355732)	10.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	9.72	4.61	2.77	6.07	3.27	0.0	1.06	2.21	3.75
Merged-chr8-109869148-3	chr8	109868660	109869660	+	890.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122594, intron 1 of 18)	CpG	557.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	68.65	54.83	48.1	84.34	54.58	54.66	86.61	39.35	34.97
Merged-chr12-116597169-2	chr12	116596679	116597679	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	MTE2a|LTR|ERVL-MaLR	111459.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.72	1.84	1.85	1.35	2.8	4.82	11.62	5.75	6.87
Merged-chr17-25868722-3	chr17	25868218	25869218	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026633)	promoter-TSS (NM_026633)	20.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	64.64	46.54	45.32	78.94	69.98	49.03	70.76	58.37	39.35
Merged-chr6-147799196-2	chr6	147798696	147799696	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108955.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	5.15	3.69	0.0	13.49	18.19	30.54	4.22	2.21	1.25
Merged-chr6-146126987-2	chr6	146126448	146127448	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	192826.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	8.58	5.53	1.85	20.92	20.06	19.29	16.9	14.59	7.49
Merged-chr17-30591003-1	chr17	30590503	30591503	+	890.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-14716.0	NM_027060	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	9.15	3.23	5.55	9.45	0.93	0.0	0.0	3.54	2.5
Merged-chr6-91489056-2	chr6	91488559	91489559	+	890.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028766)	TTS (NM_028766)	15308.0	NM_028766	74122.0	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	6.86	12.44	12.95	12.82	24.72	20.9	6.34	3.98	11.87
Merged-chr2-157064233-3	chr2	157063732	157064732	+	890.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	15033.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	60.07	39.63	67.52	64.77	54.58	81.99	57.03	31.84	21.23
Merged-chr4-9612038-3	chr4	9611540	9612540	+	890.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 3 of 22)	intron (NM_001290367, intron 3 of 22)	31677.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	17.16	16.13	16.65	14.17	5.13	4.82	31.69	23.43	17.49
Merged-chr17-69204009-2	chr17	69203518	69204518	+	890.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	44662.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	28.03	35.02	39.77	35.09	33.59	42.6	32.74	33.6	19.36
Merged-chr2-59187552-3	chr2	59187043	59188043	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	MIRb|SINE|MIR	26693.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	50.91	60.82	61.05	55.33	35.92	68.32	42.25	57.92	48.71
Merged-chr17-3084797-3	chr17	3084289	3085289	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003519)	promoter-TSS (NR_003519)	-606.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	80.66	76.03	126.72	78.27	90.04	120.57	110.9	83.13	83.06
Merged-chr3-98060032-3	chr3	98059537	98060537	+	890.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	46499.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	30.89	25.8	27.75	27.66	25.66	24.92	21.12	29.63	14.36
Merged-chr15-97182724-3	chr15	97182224	97183224	+	890.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15480.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	9.72	6.91	1.85	12.14	9.8	6.43	4.22	4.86	6.87
Merged-chr10-14102115-3	chr10	14101626	14102626	+	890.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	intron (NM_010437, intron 2 of 8)	135747.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	14.87	12.9	11.1	14.17	7.46	20.09	21.12	17.24	9.99
Merged-chr5-86961999-2	chr5	86961507	86962507	+	890.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35504.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	2.86	5.07	9.25	6.07	4.67	6.43	4.22	5.75	11.24
Merged-chr2-167844197-2	chr2	167843702	167844702	+	890.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88125.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	32.04	17.97	20.35	46.56	33.59	17.68	54.92	34.05	30.6
Merged-chr8-57574614-3	chr8	57574128	57575128	+	890.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	62785.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	6.86	7.83	5.55	4.05	5.13	6.43	11.62	3.1	5.0
Merged-chr6-83131819-3	chr6	83131312	83132312	+	890.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3996.0	NM_001136227	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	6.86	5.53	7.4	8.1	6.06	7.23	4.22	5.31	3.75
Merged-chr12-69145508-2	chr12	69145034	69146034	+	890.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	13652.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	22.31	29.95	24.05	26.99	21.93	28.13	9.51	12.82	8.74
Merged-chr13-112871751-2	chr13	112871236	112872236	+	890.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028151, intron 25 of 26)	intron (NM_028151, intron 25 of 26)	55644.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	4.0	2.3	7.4	2.7	3.73	6.43	5.28	7.52	8.12
Merged-chr2-160569748-3	chr2	160569219	160570219	+	890.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76178.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	11.44	7.37	5.55	10.12	7.46	12.06	6.34	11.5	11.87
Merged-chr14-73146915-2	chr14	73146410	73147410	+	890.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 1 of 15)	RMER6A|LTR|ERVK	4125.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	16.02	6.91	9.25	5.4	4.67	4.82	7.39	7.52	17.49
Merged-chr11-50245427-2	chr11	50244932	50245932	+	890.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6900.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	22.88	29.49	24.05	36.43	22.86	57.87	64.43	43.33	39.97
Merged-chr5-75154703-1	chr5	75154203	75155203	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	-1463.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	2.86	1.38	9.25	2.7	1.4	4.02	10.56	0.0	1.25
Merged-chr11-51224179-1	chr11	51223679	51224679	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3761.0	NR_110444	71297.0	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	5.15	5.07	8.32	5.4	7.93	12.86	15.84	13.27	13.12
Merged-chr12-16568907-1	chr12	16568407	16569407	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130412, intron 6 of 20)	intron (NM_001130412, intron 6 of 20)	20863.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	15.45	8.75	18.5	12.82	7.93	6.43	3.17	3.98	3.12
Merged-chr11-21403060-3	chr11	21402561	21403561	+	890.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31794.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	8.01	12.9	7.4	11.47	16.33	27.33	11.62	15.03	6.25
Merged-chr14-17402949-1	chr14	17402449	17403449	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258011.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.14	5.53	3.7	4.05	2.33	0.0	2.11	2.21	2.5
Merged-chr18-68180936-1	chr18	68180436	68181436	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-47010.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.44	13.36	7.4	16.87	7.46	6.43	4.22	1.33	11.87
Merged-chr7-120684782-1	chr7	120684282	120685282	+	890.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	7162.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	27.46	17.97	29.6	2.7	11.2	12.86	11.62	16.36	2.5
Merged-chr3-22058416-1	chr3	22057916	22058916	+	890.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18236.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.72	5.99	19.42	6.07	5.13	6.43	10.56	6.63	11.24
Merged-chr19-11518544-3	chr19	11518055	11519055	+	890.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-4.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	45.19	41.47	52.72	43.86	46.65	38.58	35.91	53.5	21.86
Merged-chr14-27186054-3	chr14	27185576	27186576	+	890.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42083.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	89.24	93.54	74.0	105.26	109.63	164.78	108.79	86.66	63.08
Merged-chr3-20198077-3	chr3	20197589	20198589	+	890.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24270.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	1.72	8.29	1.85	9.45	7.0	0.0	5.28	8.84	1.25
Merged-chr8-84913590-4	chr8	84913054	84914054	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_103491, intron 1 of 2)	intron (NR_103491, intron 1 of 2)	219.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	90.38	37.78	60.12	84.34	41.05	59.48	55.98	40.68	36.22
Merged-chr1-58728542-4	chr1	58727996	58728996	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 2 of 8)	intron (NM_001355056, intron 2 of 8)	-2056.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	130.43	133.63	106.37	157.21	102.63	98.06	128.85	116.73	68.07
Merged-chr1-91057655-4	chr1	91057100	91058100	+	890.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	4156.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	251.13	238.23	143.37	201.07	151.62	131.82	153.15	200.3	114.29
Merged-chr5-101909739-2	chr5	101909242	101910242	+	890.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 27 of 66)	intron (NM_172882, intron 27 of 66)	144612.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	13.16	13.36	9.25	8.1	7.93	11.25	14.79	7.96	3.75
Merged-chr1-161976594-3	chr1	161976100	161977100	+	890.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	3036.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	6.86	5.53	8.32	5.4	4.2	13.66	14.79	4.86	3.12
Merged-chr10-111994336-3	chr10	111993855	111994855	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	intron (NM_028608, intron 1 of 5)	2909.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	52.63	44.7	37.0	78.27	64.84	57.07	43.3	44.66	36.85
Merged-chr5-97055823-3	chr5	97055299	97056299	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 9 of 15)	intron (NM_080708, intron 9 of 15)	55797.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	19.45	13.36	13.87	16.87	12.13	18.49	27.46	11.05	8.12
Merged-chr6-21955002-3	chr6	21954527	21955527	+	890.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	MTD|LTR|ERVL-MaLR	5412.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	57.78	61.75	40.7	76.24	75.57	57.07	53.87	61.46	39.97
Merged-chrX-71053019-3	chrX	71052538	71053538	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	2782.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	43.48	60.36	34.22	37.78	23.33	46.62	33.8	36.26	43.72
Merged-chr12-4366141-1	chr12	4365641	4366641	+	890.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010881, intron 2 of 22)	ORR1E|LTR|ERVL-MaLR	111041.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	8.01	2.76	5.55	6.07	3.27	0.8	6.34	2.65	2.5
Merged-chr6-129468978-1	chr6	129468478	129469478	+	890.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_132130, exon 3 of 6)	non-coding (NR_132130, exon 3 of 6)	3801.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	18.88	18.89	18.5	20.24	12.13	18.49	35.91	39.8	29.98
Merged-chr12-118930744-3	chr12	118930248	118931248	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029961, intron 11 of 27)	intron (NM_029961, intron 11 of 27)	35673.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	5.15	1.38	3.7	4.05	0.93	2.41	2.11	3.98	1.25
Merged-chr9-20868737-3	chr9	20868269	20869269	+	890.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175687, exon 1 of 8)	5' UTR (NM_175687, exon 1 of 8)	127.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	60.64	54.83	59.2	82.99	82.11	75.56	82.38	45.54	36.85
Merged-chr15-59426955-1	chr15	59426455	59427455	+	890.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	52757.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	10.3	7.37	19.42	20.24	15.86	15.27	8.45	6.19	6.87
Merged-chr2-153557569-3	chr2	153557068	153558068	+	890.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27597.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	11.44	12.9	7.4	14.17	14.93	11.25	20.07	19.46	19.36
Merged-chr3-97681221-3	chr3	97680737	97681737	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9325.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	50.34	64.97	73.07	56.0	56.45	65.11	76.05	57.04	46.84
Merged-chr19-8534803-3	chr19	8534313	8535313	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56441.0	NM_001164634	19879.0	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	3.43	2.3	5.55	0.0	2.8	0.0	3.17	3.1	1.25
Merged-chrX-9473940-3	chrX	9473445	9474445	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4621.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	138.44	189.84	71.22	134.27	131.56	73.14	121.46	149.45	72.45
Merged-chr3-90111849-3	chr3	90111352	90112352	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029937, intron 2 of 39)	intron (NM_029937, intron 2 of 39)	7720.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	11.44	11.98	7.4	19.57	10.26	13.66	15.84	15.03	13.12
Merged-chr2-160084947-3	chr2	160084457	160085457	+	890.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68304.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	73.79	64.97	40.7	80.29	59.25	60.28	38.02	24.76	38.72
Merged-chr1-179803126-2	chr1	179802625	179803625	+	890.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026375, intron 1 of 35)	CpG	890.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	110.41	75.57	96.2	102.56	84.44	83.59	119.35	73.4	59.33
Merged-chr8-121591542-3	chr8	121591079	121592079	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026160, intron 1 of 3)	intron (NM_026160, intron 1 of 3)	1111.0	NM_026160	67443.0	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	35.47	31.33	32.37	23.62	27.06	25.72	27.46	24.32	8.12
Merged-chr4-134763995-3	chr4	134763485	134764485	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	4019.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	129.86	115.2	94.35	160.58	134.35	140.66	179.55	178.19	103.67
Merged-chr6-31115715-3	chr6	31115224	31116224	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52631.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	358.11	398.12	194.24	329.94	362.01	260.43	332.7	436.42	194.23
Merged-chr2-129304659-3	chr2	129304163	129305163	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 5 of 6)	intron (NM_010554, intron 5 of 6)	5309.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	61.21	55.75	37.92	43.18	22.86	33.76	50.7	46.43	36.85
Merged-chr4-108790683-3	chr4	108790184	108791184	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9596.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	10.87	7.37	1.85	6.75	12.6	8.84	3.17	1.77	0.0
Merged-chr16-49888416-3	chr16	49887898	49888898	+	890.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 4 of 9)	Tigger6a|DNA|TcMar-Tigger	32744.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	25.74	27.65	19.42	41.83	41.99	30.54	25.35	19.46	19.98
Merged-chr16-95659700-2	chr16	95659213	95660213	+	890.0166630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42694.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	13.16	9.22	9.25	15.52	19.59	26.53	24.29	10.61	3.75
Merged-chr11-48874690-3	chr11	48874204	48875204	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3284.0	NM_008326	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	15.45	15.21	3.7	10.12	5.6	1.61	6.34	3.1	4.37
Merged-chr12-40504205-3	chr12	40503699	40504699	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	L1M2|LINE|L1	58146.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	22.88	30.41	49.02	14.17	24.72	20.09	32.74	35.82	17.49
Merged-chr11-22782874-1	chr11	22782374	22783374	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76861.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	10.87	5.99	10.17	15.52	11.66	16.88	9.51	10.17	13.12
Merged-chr7-135652431-2	chr7	135651966	135652966	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015548)	promoter-TSS (NR_015548)	-152.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	183.06	252.51	163.72	145.06	215.06	145.49	198.56	247.17	124.28
Merged-chr7-96418530-1	chr7	96418030	96419030	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-76566.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	6.29	4.61	9.25	4.72	5.6	4.82	4.22	1.77	3.75
Merged-chr1-140261379-3	chr1	140260876	140261876	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	15119.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	16.02	16.13	5.55	9.45	11.66	16.08	10.56	0.88	5.0
Merged-chr12-33017031-2	chr12	33016532	33017532	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	62846.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	12.59	2.76	1.85	8.77	9.33	5.63	6.34	3.98	5.62
Merged-chr18-61482447-1	chr18	61481947	61482947	+	890.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	2160.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	25.17	22.12	27.75	29.69	22.39	29.74	73.93	48.2	38.72
Merged-chr7-110999605-2	chr7	110999100	111000100	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17139.0	NM_194464	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	6.29	0.92	0.0	9.45	3.73	4.02	7.39	3.1	7.49
Merged-chr15-103255367-3	chr15	103254857	103255857	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008685)	promoter-TSS (NM_008685)	82.0	NM_008685	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	8.01	2.3	1.85	12.82	6.06	11.25	12.67	4.86	8.74
Merged-chr5-74953997-1	chr5	74953497	74954497	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	4803.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	8.58	6.45	9.25	10.12	19.59	23.31	10.56	4.42	10.62
Merged-chr14-105288098-1	chr14	105287598	105288598	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 2 of 7)	intron (NM_029561, intron 2 of 7)	29425.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	38.9	41.93	30.52	38.46	25.19	40.99	41.19	33.6	26.85
Merged-chr13-42015690-3	chr13	42015197	42016197	+	890.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36324.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	38.9	30.41	20.35	34.41	30.32	16.08	31.69	27.86	21.23
Merged-chr10-26785424-1	chr10	26784924	26785924	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	12912.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	10.87	7.37	5.55	4.72	9.8	4.02	8.45	7.52	5.0
Merged-chr4-40781380-1	chr4	40780880	40781880	+	890.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23495.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.0	2.76	3.7	7.42	6.06	6.43	6.34	3.98	3.75
Merged-chr15-31418268-3	chr15	31417821	31418821	+	889.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35368.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	12.01	7.83	7.4	19.57	14.93	8.04	15.84	7.07	1.87
Merged-chr9-99001539-3	chr9	99001040	99002040	+	889.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011810, intron 4 of 4)	intron (NM_011810, intron 4 of 4)	15167.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	17.16	14.28	16.65	21.59	19.59	15.27	29.57	19.01	5.62
Merged-chr16-33180118-3	chr16	33179599	33180599	+	889.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4972.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	37.76	47.46	42.55	44.53	31.26	52.25	50.7	58.37	42.47
Merged-chr8-46769506-3	chr8	46769008	46770008	+	889.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	29763.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	106.97	114.27	93.42	116.05	82.57	83.59	90.83	89.76	61.83
Merged-chr3-61442376-3	chr3	61441850	61442850	+	889.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77843.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	13.16	14.75	21.27	22.27	17.26	24.11	8.45	15.92	17.49
Merged-chr6-59180572-2	chr6	59180072	59181072	+	889.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28298.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	2.86	5.07	1.85	4.72	1.87	1.61	4.22	2.21	2.5
Merged-chr17-72944118-3	chr17	72943603	72944603	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	25798.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	28.6	31.79	21.27	24.29	24.26	34.56	29.57	39.8	28.73
Merged-chr11-100323804-3	chr11	100323284	100324284	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3835.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	45.76	56.22	37.0	30.36	27.52	48.23	33.8	23.88	39.35
Merged-chr11-110562522-3	chr11	110562025	110563025	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83185.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	10.3	17.97	13.87	10.12	7.93	10.45	13.73	7.96	16.24
Merged-chr4-134799491-3	chr4	134799000	134800000	+	889.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31496.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	5.72	5.07	8.32	5.4	1.4	6.43	3.17	3.98	2.5
Merged-chr17-12372232-2	chr17	12371743	12372743	+	889.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6366.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	4.58	3.69	3.7	14.84	9.33	10.45	15.84	10.17	3.75
Merged-chr17-73939163-2	chr17	73938657	73939657	+	889.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	MTE2b|LTR|ERVL-MaLR	11039.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	25.17	20.74	24.97	29.69	19.13	12.86	35.91	26.09	23.73
Merged-chr11-121735203-3	chr11	121734701	121735701	+	889.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32774.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	45.19	57.6	39.77	64.1	73.71	102.88	92.94	98.6	59.95
Merged-chr2-127832348-3	chr2	127831840	127832840	+	889.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-481.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	38.33	30.87	25.9	33.74	21.46	26.53	52.81	30.95	20.61
Merged-chr17-42436164-3	chr17	42435669	42436669	+	889.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	intron (NM_001355270, intron 2 of 2)	119569.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	2.86	3.69	7.4	8.77	11.2	5.63	14.79	7.96	13.74
Merged-chr19-10946853-3	chr19	10946310	10947310	+	889.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 1 of 3)	intron (NM_023731, intron 1 of 3)	2456.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	101.25	110.13	132.27	101.21	96.57	129.41	137.3	137.96	103.05
Merged-chr15-84341220-2	chr15	84340716	84341716	+	889.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162500, intron 12 of 12)	intron (NM_001162500, intron 12 of 12)	15097.0	NM_001162500	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	5.15	4.15	11.1	10.8	3.73	1.61	7.39	7.07	4.37
Merged-chr4-141823152-3	chr4	141822630	141823630	+	889.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007919, intron 2 of 7)	MTD|LTR|ERVL-MaLR	2875.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	12.01	10.6	1.85	4.72	1.4	1.61	13.73	17.69	16.86
Merged-chr15-76309702-3	chr15	76309209	76310209	+	889.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2464.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	38.33	26.73	29.6	25.64	14.93	40.19	22.18	22.55	11.24
Merged-chr12-76957405-3	chr12	76956900	76957900	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	4848.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	129.28	139.16	105.44	170.03	163.28	135.84	147.87	218.43	69.32
Merged-chr4-134765230-3	chr4	134764733	134765733	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	B1_Mus2|SINE|Alu	2771.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	72.65	75.11	67.52	75.57	83.97	109.32	94.0	120.27	75.57
Merged-chr2-51094886-3	chr2	51094383	51095383	+	889.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	54228.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	14.3	13.36	3.7	14.84	10.26	4.02	6.34	7.07	6.25
Merged-chr3-89905616-3	chr3	89905102	89906102	+	889.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7594.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	72.08	86.63	60.12	53.3	58.78	49.83	79.21	72.96	53.71
Merged-chr4-151860990-5	chr4	151860511	151861511	+	889.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	757.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	78.37	50.23	57.35	84.34	30.79	49.03	82.38	37.58	37.47
Merged-chr15-64278291-3	chr15	64277791	64278791	+	889.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	34382.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	66.93	67.27	49.02	30.36	27.99	26.53	36.97	37.14	49.34
Merged-chr1-171466767-3	chr1	171466242	171467242	+	889.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	29181.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	35.47	47.92	22.2	43.86	27.52	52.25	79.21	66.33	37.47
Merged-chr4-121018434-3	chr4	121017940	121018940	+	889.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1193.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	12.59	10.6	5.55	22.27	15.39	32.15	9.51	7.96	16.86
Merged-chr15-38427633-3	chr15	38427140	38428140	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	62907.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	6.86	6.45	1.85	4.72	10.26	6.43	7.39	6.19	3.75
Merged-chr15-58870086-3	chr15	58869597	58870597	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2552.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	21.17	21.2	3.7	20.24	17.26	8.04	15.84	26.09	14.99
Merged-chr4-134092633-3	chr4	134092130	134093130	+	889.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001162970)	TTS (NM_001162970)	2443.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	14.87	7.37	12.02	9.45	2.8	4.82	19.01	13.27	11.24
Merged-chr16-18733755-2	chr16	18733256	18734256	+	889.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-43091.0	NM_013805	12741.0	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	36.61	21.2	8.32	39.13	20.06	22.51	25.35	19.46	2.5
Merged-chr17-34934049-2	chr17	34933571	34934571	+	889.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010893, exon 4 of 6)	exon (NM_010893, exon 4 of 6)	2818.0	NM_010893	18010.0	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	42.9	49.3	57.35	52.63	38.72	78.77	45.42	43.33	61.83
Merged-chr11-79251077-3	chr11	79250558	79251558	+	889.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019653, exon 2 of 9)	exon (NM_019653, exon 2 of 9)	3637.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	29.75	27.65	16.65	53.3	29.39	20.09	32.74	29.63	8.74
Merged-chr10-98831678-3	chr10	98831160	98832160	+	889.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82982.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	17.16	17.05	3.7	12.82	9.8	21.7	20.07	18.13	9.37
Merged-chr5-140350106-3	chr5	140349617	140350617	+	889.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	18161.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	21.74	27.19	14.8	39.81	28.46	37.78	14.79	25.65	19.36
Merged-chr4-26441708-3	chr4	26441193	26442193	+	889.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95041.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	5.72	11.06	1.85	23.62	16.33	10.45	5.28	9.29	5.0
Merged-chr2-84455376-3	chr2	84454894	84455894	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	18780.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	7.44	4.61	0.0	4.72	2.8	7.23	6.34	2.21	2.5
Merged-chr17-64609130-3	chr17	64608641	64609641	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	7492.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	15.45	9.68	9.25	8.1	6.06	10.45	7.39	8.4	8.12
Merged-chr19-5953527-3	chr19	5953023	5954023	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 6 of 17)	intron (NM_001164057, intron 6 of 17)	10683.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	21.74	17.51	12.95	37.11	9.33	25.72	30.63	23.43	26.85
Merged-chr3-144897410-3	chr3	144896919	144897919	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1408.0	NR_126537	622139.0	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	14.3	9.68	15.72	41.16	34.06	47.42	35.91	29.63	18.74
Merged-chr10-75513380-3	chr10	75512885	75513885	+	889.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	3996.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	100.68	62.21	58.27	89.74	64.84	49.03	120.41	103.02	71.82
Merged-chr2-170133484-4	chr2	170132996	170133996	+	889.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 1 of 6)	CpG	-2276.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	191.07	208.27	139.67	157.21	129.69	157.54	192.23	254.69	116.79
Merged-chr16-17939032-3	chr16	17938526	17939526	+	889.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10807.0	NM_153150	13358.0	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	6.29	4.15	0.0	6.75	2.33	1.61	3.17	1.77	1.25
Merged-chr13-98810380-3	chr13	98809885	98810885	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	5064.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	41.19	73.73	46.25	45.21	50.38	56.27	81.33	89.32	59.33
Merged-chr2-45031360-1	chr2	45030860	45031860	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-8183.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	16.02	25.34	20.35	25.64	27.99	24.92	34.85	19.46	16.24
Merged-chr5-86100894-2	chr5	86100403	86101403	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 7 of 7)	intron (NM_001310639, intron 7 of 7)	29157.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	17.73	22.12	27.75	20.92	22.86	28.13	16.9	23.43	17.49
Merged-chr13-45105354-3	chr13	45104898	45105898	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103302.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	10.87	9.68	9.25	14.84	9.33	6.43	20.07	16.8	14.99
Merged-chr1-84428776-1	chr1	84428276	84429276	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-144131.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	13.16	15.67	16.65	15.52	8.4	17.68	12.67	14.15	13.74
Merged-chr1-131761617-2	chr1	131761124	131762124	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177243, intron 12 of 20)	intron (NM_177243, intron 12 of 20)	17602.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	6.29	2.3	3.7	8.1	5.13	4.82	2.11	0.88	5.0
Merged-chr13-107025812-2	chr13	107025306	107026306	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015471, intron 1 of 3)	RMER6A|LTR|ERVK	3236.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	14.87	9.22	3.7	16.19	11.66	9.65	5.28	6.63	11.87
Merged-chr1-173737873-3	chr1	173737356	173738356	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	3953.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	113.27	115.66	36.07	160.58	154.41	86.01	92.94	93.74	90.56
Merged-chr7-99546375-3	chr7	99545912	99546912	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-5857.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	99.54	142.84	111.92	91.09	104.96	112.53	108.79	114.96	83.69
Merged-chr8-24419940-2	chr8	24419440	24420440	+	889.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19006.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	33.18	21.66	9.25	99.18	64.84	64.3	71.82	65.44	31.23
Merged-chr12-30265362-1	chr12	30264862	30265862	+	889.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324520, intron 8 of 16)	ORR1E|LTR|ERVL-MaLR	108013.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	21.17	13.82	18.5	10.8	8.86	3.22	3.17	1.33	3.75
Merged-chr3-35732504-3	chr3	35731990	35732990	+	889.494446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-21573.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	16.59	8.75	7.4	12.82	11.66	8.84	20.07	15.03	14.99
Merged-chr14-55696794-3	chr14	55696306	55697306	+	889.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-14989.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	99.54	91.7	77.7	97.16	103.1	109.32	182.72	207.38	76.19
Merged-chr12-77092632-3	chr12	77092141	77093141	+	889.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130393.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	8.01	13.82	12.02	8.77	9.33	12.86	8.45	8.84	9.37
Merged-chr8-77443315-3	chr8	77442837	77443837	+	889.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-73719.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	100.68	82.02	56.42	140.34	142.29	88.42	90.83	115.41	43.09
Merged-chr15-60854380-3	chr15	60853886	60854886	+	889.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29306.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	7.44	13.82	9.25	8.1	2.33	1.61	8.45	7.96	7.49
Merged-chr15-5432231-3	chr15	5431752	5432752	+	889.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64066.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	7.44	6.45	1.85	12.14	14.46	3.22	12.67	4.42	2.5
Merged-chr11-116666798-3	chr11	116666306	116667306	+	889.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163318, intron 4 of 4)	intron (NM_001163318, intron 4 of 4)	-4854.0	NR_027821	66293.0	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	19.45	18.89	31.45	12.14	12.13	12.86	5.28	11.5	11.24
Merged-chr4-75315201-3	chr4	75314699	75315699	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	-36907.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	44.05	45.16	29.6	29.69	14.46	52.25	36.97	43.77	38.1
Merged-chr12-84176842-3	chr12	84176349	84177349	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	17166.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	161.89	142.84	186.84	125.5	115.23	118.96	107.73	136.19	85.56
Merged-chrX-167166610-3	chrX	167166100	167167100	+	889.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	42618.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	34.32	43.31	30.52	25.64	24.26	16.88	25.35	22.11	9.37
Merged-chr5-125408148-3	chr5	125407653	125408653	+	889.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18136.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	14.87	14.28	13.87	12.82	9.8	23.31	22.18	15.03	26.23
Merged-chr6-50978778-2	chr6	50978258	50979258	+	889.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	202643.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	2.29	6.91	3.7	10.12	6.06	11.25	11.62	4.86	13.74
Merged-chr2-79087359-3	chr2	79086851	79087851	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168075.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	114.41	155.28	28.67	124.82	127.36	87.61	122.52	166.7	78.07
Merged-chr16-59559786-3	chr16	59559302	59560302	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4050.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	69.79	91.7	40.7	66.8	71.38	57.07	94.0	137.07	80.56
Merged-chr4-34081263-1	chr4	34080763	34081763	+	889.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31196.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	9.15	6.91	7.4	4.72	5.6	6.43	5.28	7.96	5.0
Merged-chr8-35707065-1	chr8	35706565	35707565	+	889.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118045.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.86	3.23	3.7	3.37	3.73	0.0	14.79	10.17	11.87
Merged-chr10-59879003-3	chr10	59878505	59879505	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019965)	promoter-TSS (NM_019965)	-586.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	58.35	56.22	66.6	51.28	30.32	48.23	82.38	76.49	56.83
Merged-chr10-93576122-1	chr10	93575622	93576622	+	889.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-13291.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	9.15	2.76	1.85	9.45	5.13	1.61	12.67	17.69	5.0
Merged-chr5-117181914-3	chr5	117181412	117182412	+	889.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	48324.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	52.63	56.22	57.35	66.8	74.64	65.11	49.64	53.94	42.47
Merged-chr6-16855218-1	chr6	16854718	16855718	+	889.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	43223.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	17.73	29.03	32.37	33.74	28.92	23.31	25.35	24.76	9.37
Merged-chr8-3353538-3	chr8	3352984	3353984	+	889.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033378)	promoter-TSS (NM_001033378)	69.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	6.29	5.07	8.32	6.75	8.4	3.22	5.28	2.65	2.5
Merged-chr1-136124446-2	chr1	136123942	136124942	+	889.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6741.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	10.87	10.14	8.32	15.52	12.13	32.96	33.8	26.53	13.12
Merged-chr2-34727486-3	chr2	34726945	34727945	+	889.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 4 of 26)	intron (NR_151469, intron 4 of 26)	27787.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	156.74	160.35	99.89	161.93	156.28	102.08	167.93	217.55	96.18
Merged-chr9-74938827-1	chr9	74938327	74939327	+	889.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14053.0	NM_001359816	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	1.14	3.23	0.0	3.37	7.93	4.82	7.39	4.42	9.37
Merged-chr1-120948573-3	chr1	120948069	120949069	+	889.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-138836.0	NR_038008	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	21.74	13.36	19.42	13.49	14.46	23.31	12.67	9.73	19.98
Merged-chr3-152262881-3	chr3	152262375	152263375	+	889.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	2920.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	23.45	15.21	8.32	24.96	18.19	4.82	12.67	6.19	10.62
Merged-chr1-171649069-3	chr1	171648560	171649560	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347184)	promoter-TSS (NM_001347184)	-61.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	10.87	9.22	0.92	8.1	6.53	1.61	9.51	7.52	3.75
Merged-chr19-46934259-1	chr19	46933759	46934759	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 2 of 17)	L1ME1|LINE|L1	28092.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	22.88	23.96	18.5	42.51	22.39	35.37	21.12	32.72	18.74
Merged-chr18-5760474-1	chr18	5759974	5760974	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360982, intron 4 of 7)	intron (NM_001360982, intron 4 of 7)	167827.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	5.72	1.84	2.77	9.45	6.53	8.04	3.17	3.54	8.74
Merged-chr8-72815945-1	chr8	72815445	72816445	+	889.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010687, exon 15 of 15)	exon (NM_010687, exon 15 of 15)	54286.0	NM_007975	14065.0	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	1.72	5.99	1.85	7.42	4.2	9.65	4.22	1.33	2.5
Merged-chr14-25609557-3	chr14	25609055	25610055	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	6042.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	13.16	11.06	14.8	20.24	6.53	12.06	8.45	9.29	5.62
Merged-chr13-5592060-3	chr13	5591564	5592564	+	889.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	266028.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	34.9	58.98	14.8	61.4	66.24	40.99	36.97	50.85	13.12
Merged-chr3-37705027-2	chr3	37704514	37705514	+	889.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	19346.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	1.72	2.76	7.4	4.05	2.8	6.43	6.34	4.86	2.5
Merged-chr16-38456838-2	chr16	38456360	38457360	+	889.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2073.0	NM_001359898	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	89.81	81.56	50.87	110.65	64.38	96.45	88.72	85.34	57.46
Merged-chr8-121850133-3	chr8	121849656	121850656	+	889.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20587.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	7.44	7.37	3.7	8.77	3.27	0.8	7.39	3.54	8.74
Merged-chr10-86977480-3	chr10	86976978	86977978	+	889.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 5 of 68)	intron (NM_138673, intron 5 of 68)	30464.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	28.03	28.11	20.35	26.99	20.53	29.74	23.24	28.74	12.49
Merged-chr6-92287125-3	chr6	92286610	92287610	+	889.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42460.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	3.43	2.76	5.55	2.7	0.47	4.02	11.62	9.73	6.87
Merged-chr10-122641599-3	chr10	122641088	122642088	+	889.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6751.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	17.73	18.89	11.1	31.04	19.59	14.47	35.91	34.05	26.85
Merged-chr5-30973894-3	chr5	30973386	30974386	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053085, exon 3 of 3)	3' UTR (NM_053085, exon 3 of 3)	5209.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	19.45	9.68	7.4	13.49	5.6	8.04	34.85	19.01	13.12
Merged-chr12-44858301-3	chr12	44857802	44858802	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 5 of 5)	intron (NM_144552, intron 5 of 5)	216181.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	7.44	1.84	0.92	0.0	1.4	4.82	4.22	3.1	8.74
Merged-chr10-58350770-3	chr10	58350300	58351300	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-1163.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	32.04	30.41	26.82	29.01	13.06	18.49	41.19	22.55	33.1
Merged-chr11-67537564-3	chr11	67537058	67538058	+	889.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	4560.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	4.0	1.84	3.7	6.75	4.67	4.02	8.45	3.1	2.5
Merged-chr4-43474127-3	chr4	43473574	43474574	+	889.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9635.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	16.59	26.73	40.7	29.01	20.06	24.11	23.24	22.11	27.48
Merged-chr7-141370746-3	chr7	141370245	141371245	+	889.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-5635.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	97.82	142.84	112.84	99.86	131.56	115.75	139.42	152.55	105.55
Merged-chr10-93242330-3	chr10	93241828	93242828	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146239)	TTS (NM_146239)	68831.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	14.87	13.82	9.25	23.62	12.6	11.25	9.51	11.05	22.48
Merged-chr2-27306910-1	chr2	27306410	27307410	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 3 of 29)	L1MD|LINE|L1	-59607.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	25.17	9.68	7.4	10.8	17.26	16.08	19.01	15.03	8.12
Merged-chr18-55282547-1	chr18	55282047	55283047	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289956.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.86	3.23	1.85	4.05	3.27	3.22	5.28	2.65	6.25
Merged-chr6-93066434-1	chr6	93065934	93066934	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	125852.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.72	2.3	12.02	8.77	10.73	6.43	3.17	0.88	1.25
Merged-chr17-33904104-3	chr17	33903601	33904601	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1034.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	40.04	58.98	36.07	70.17	59.71	78.77	48.58	74.73	64.95
Merged-chr15-80035650-2	chr15	80035152	80036152	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	119.56	81.1	95.27	133.59	87.24	124.59	64.43	66.77	76.82
Merged-chr17-36865760-1	chr17	36865260	36866260	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177872, intron 2 of 6)	MTD|LTR|ERVL-MaLR	1427.0	NM_001024134	69097.0	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	12.01	18.89	18.5	10.12	9.33	12.86	6.34	1.77	5.0
Merged-chr18-88910232-1	chr18	88909732	88910732	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16025.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.43	9.68	9.25	9.45	14.0	13.66	3.17	5.75	3.75
Merged-chr5-103927637-3	chr5	103927140	103928140	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16381.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	7.44	7.37	0.0	8.77	0.93	0.0	4.22	1.77	1.25
Merged-chr4-125015931-3	chr4	125015445	125016445	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14069.0	NM_145552	230737.0	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	24.03	19.81	16.65	12.14	13.53	18.49	17.96	28.74	12.49
Merged-chr16-85455380-1	chr16	85454880	85455880	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_144853)	TTS (NM_144853)	94993.0	NM_144853	224405.0	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	1.14	1.38	1.85	2.7	1.87	0.8	1.06	2.65	3.75
Merged-chr2-167335917-1	chr2	167335417	167336417	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	13261.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	86.38	77.41	56.42	116.73	99.83	116.55	90.83	98.6	56.83
Merged-chr11-101708632-3	chr11	101708133	101709133	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24323.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	10.3	9.68	11.1	16.87	14.93	20.09	13.73	14.15	14.99
Merged-chr12-32638341-1	chr12	32637841	32638841	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181994.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	16.02	14.75	2.77	9.45	8.4	4.82	5.28	5.75	3.75
Merged-chr12-83594867-1	chr12	83594367	83595367	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183154, exon 2 of 12)	exon (NM_183154, exon 2 of 12)	2355.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	11.44	11.98	4.62	14.17	6.53	12.86	15.84	10.61	9.37
Merged-chr19-15829297-2	chr19	15828808	15829808	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95314.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	2.29	8.29	9.25	20.24	13.53	18.49	2.11	6.63	3.75
Merged-chr12-112707154-3	chr12	112706668	112707668	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15006.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	4.58	5.07	3.7	3.37	0.93	3.22	3.17	0.0	6.25
Merged-chr7-112213682-1	chr7	112213182	112214182	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12154.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	7.44	6.91	9.25	8.1	12.6	14.47	1.06	0.44	8.74
Merged-chr15-95907074-3	chr15	95906579	95907579	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 3 of 19)	intron (NM_175344, intron 3 of 19)	-77007.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	27.46	19.81	16.65	39.13	15.86	24.92	33.8	31.84	24.36
Merged-chr15-31413123-1	chr15	31412623	31413623	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	40566.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	2.86	5.53	0.0	4.72	4.67	6.43	1.06	1.77	4.37
Merged-chr11-3123286-1	chr11	3122786	3123786	+	889.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003517)	promoter-TSS (NR_003517)	-735.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	42.33	54.37	63.82	55.33	41.05	72.34	97.17	51.29	78.69
Merged-chr10-127509101-3	chr10	127508604	127509604	+	889.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177707)	TTS (NM_177707)	-5835.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	8.01	1.38	3.7	6.07	3.27	8.84	3.17	1.77	0.0
Merged-chr12-8429951-1	chr12	8429451	8430451	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70058.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.58	5.07	7.4	4.05	2.33	4.82	4.22	1.77	3.75
Merged-chr1-56100386-1	chr1	56099886	56100886	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81408.0	NR_126076	69356.0	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	1.14	1.84	1.85	6.07	6.06	7.23	3.17	1.77	2.5
Merged-chr10-17767104-1	chr10	17766604	17767604	+	889.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29115.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	14.3	11.52	12.95	20.24	22.39	38.58	2.11	4.86	0.0
Merged-chr3-90292438-3	chr3	90291942	90292942	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22293.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	110.41	115.2	78.62	87.04	106.36	129.41	116.18	143.26	93.05
Merged-chr7-126199876-3	chr7	126199397	126200397	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	604.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	237.4	213.8	150.77	235.48	248.18	152.72	205.96	242.31	115.54
Merged-chr6-37871490-3	chr6	37870999	37871999	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145076, intron 1 of 18)	CpG	688.0	NM_145076	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	78.37	66.35	45.32	68.15	47.58	49.03	95.06	57.92	41.22
Merged-chr17-31305054-3	chr17	31304558	31305558	+	888.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 2 of 19)	intron (NM_001242427, intron 2 of 19)	8834.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	61.78	60.36	22.2	68.82	42.92	46.62	102.45	89.76	21.86
Merged-chr11-89051965-2	chr11	89051473	89052473	+	888.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019505, intron 3 of 10)	L1MB8|LINE|L1	8775.0	NM_019505	56077.0	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	58.92	63.59	45.32	9.45	1.87	8.04	31.69	37.58	17.49
Merged-chr19-43709862-3	chr19	43709338	43710338	+	888.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	20149.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	6.29	12.9	19.42	26.99	20.06	17.68	68.65	48.64	35.6
Merged-chr12-11178162-2	chr12	11177571	11178571	+	888.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26431.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	8.01	5.07	3.7	2.7	0.0	1.61	2.11	2.21	2.5
Merged-chr7-122939330-3	chr7	122938827	122939827	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31132.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	17.73	23.04	14.8	29.69	12.13	28.94	30.63	22.99	17.49
Merged-chr2-167922031-3	chr2	167921533	167922533	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10294.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	12.59	14.28	29.6	35.09	16.33	47.42	14.79	7.52	9.99
Merged-chr7-43396981-3	chr7	43396471	43397471	+	888.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11309.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	19.45	13.82	41.62	13.49	14.0	17.68	14.79	13.71	14.36
Merged-chr4-24597131-3	chr4	24596597	24597597	+	888.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 22 of 24)	intron (NR_149739, intron 22 of 24)	100646.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.72	3.69	8.32	9.45	6.06	6.43	6.34	1.77	5.0
Merged-chr4-133729650-2	chr4	133729178	133730178	+	888.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-12570.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	54.35	31.33	33.3	26.31	26.59	13.66	20.07	13.27	6.25
Merged-chr13-113580499-2	chr13	113579998	113580998	+	888.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38066.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	29.75	19.81	18.5	18.89	22.39	16.08	21.12	18.13	6.25
Merged-chr15-59654655-3	chr15	59654155	59655155	+	888.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144549, exon 3 of 3)	exon (NM_144549, exon 3 of 3)	6001.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	26.31	10.14	11.1	26.31	8.4	8.04	20.07	9.29	5.0
Merged-chr7-31085307-1	chr7	31084807	31085807	+	888.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8610.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	8.58	6.45	3.7	20.24	21.93	14.47	5.28	2.21	4.37
Merged-chr10-121498839-6	chr10	121498356	121499356	+	888.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22606.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	116.13	128.1	84.17	145.06	111.5	106.9	96.11	90.64	83.69
Merged-chr6-38939271-3	chr6	38938766	38939766	+	888.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	20280.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	211.09	237.3	179.44	224.68	193.13	134.23	195.39	232.14	106.79
Merged-chr15-89179095-3	chr15	89178589	89179589	+	888.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	1699.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	116.7	138.24	78.62	89.74	97.97	84.4	105.62	127.79	106.79
Merged-chr15-41765952-2	chr15	41765462	41766462	+	888.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	L1MA4|LINE|L1	-23033.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	12.59	6.91	7.4	16.87	15.39	15.27	11.62	11.5	6.87
Merged-chr16-29453470-3	chr16	29452974	29453974	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 13 of 21)	intron (NM_001164613, intron 13 of 21)	-74742.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	16.59	29.03	14.8	51.95	37.79	44.21	44.36	45.54	21.23
Merged-chr8-10832098-3	chr8	10831595	10832595	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50359.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	74.37	69.12	47.17	57.35	43.39	24.11	46.47	34.05	14.99
Merged-chr1-156921755-3	chr1	156921266	156922266	+	888.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357391, intron 1 of 19)	intron (NM_001357391, intron 1 of 19)	17621.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	13.16	14.75	7.4	14.84	15.39	16.88	20.07	15.48	11.24
Merged-chr4-131921034-2	chr4	131920548	131921548	+	888.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-723.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	71.51	69.12	63.82	96.48	67.18	95.65	45.42	30.95	22.48
Merged-chr11-54563037-2	chr11	54562533	54563533	+	888.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 5 of 28)	intron (NM_001252494, intron 5 of 28)	-33113.0	NM_001252498	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.86	6.91	7.4	15.52	9.8	10.45	13.73	5.31	11.24
Merged-chr8-25012837-4	chr8	25012285	25013285	+	888.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270996, intron 1 of 21)	intron (NM_001270996, intron 1 of 21)	4137.0	NM_001270996	11502.0	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	100.68	105.98	103.59	86.36	76.04	83.59	153.15	151.66	109.92
Merged-chr5-43799740-2	chr5	43799241	43800241	+	888.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17592.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	2.29	5.07	9.25	6.75	7.46	14.47	4.22	6.19	3.75
Merged-chr16-16042272-3	chr16	16041769	16042769	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 6 of 18)	Lx2|LINE|L1	104582.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	6.29	5.99	11.1	6.75	2.8	10.45	4.22	5.31	4.37
Merged-chr10-34167187-3	chr10	34166691	34167691	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	MLT1C|LTR|ERVL-MaLR	-39219.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	17.73	24.88	18.5	26.99	14.46	23.31	14.79	17.69	14.36
Merged-chr8-83736809-3	chr8	83736310	83737310	+	888.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	intron (NM_011925, intron 1 of 19)	4501.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	123.56	123.49	106.37	70.85	49.45	61.09	118.29	121.15	78.07
Merged-chr2-29788261-3	chr2	29787750	29788750	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290496)	promoter-TSS (NM_001290496)	-579.0	NM_001290495	227682.0	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	17.16	38.71	33.3	31.04	29.39	45.01	46.47	39.8	32.48
Merged-chr10-81431867-3	chr10	81431280	81432280	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-4607.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	94.39	35.94	39.77	79.62	35.92	45.82	68.65	64.56	36.22
Merged-chr13-56335507-1	chr13	56335007	56336007	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27393.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	21.17	38.71	50.87	42.51	53.18	80.38	35.91	28.74	42.47
Merged-chr8-22228770-1	chr8	22228270	22229270	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205253, intron 1 of 3)	intron (NM_001205253, intron 1 of 3)	1467.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	3.43	3.23	1.85	6.75	2.8	1.61	4.22	3.1	3.75
Merged-chr1-170555087-3	chr1	170554575	170555575	+	888.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	2035.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	2.86	2.3	4.62	11.47	7.93	12.86	4.22	2.21	4.37
Merged-chr15-5126653-1	chr15	5126153	5127153	+	888.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	8232.0	NR_028091	100302529.0		NR_028091		Snord72	MBII-240	small nucleolar RNA, C/D box 72	snoRNA	4.0	1.84	1.85	2.02	4.67	4.82	10.56	1.77	8.74
Merged-chr14-121422104-2	chr14	121421622	121422622	+	888.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42892.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	31.46	48.84	24.05	46.56	43.85	51.44	55.98	56.16	36.85
Merged-chr16-94502278-3	chr16	94501788	94502788	+	888.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	24341.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	46.34	41.47	24.05	60.72	55.51	40.99	40.14	31.39	20.61
Merged-chr4-83265779-2	chr4	83265283	83266283	+	888.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 3 of 19)	intron (NM_027238, intron 3 of 19)	58406.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	81.8	82.02	73.07	48.58	58.78	68.32	36.97	43.33	33.1
Merged-chr4-32239990-3	chr4	32239489	32240489	+	888.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-177446.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	44.62	27.65	10.17	39.81	25.19	38.58	21.12	11.94	7.49
Merged-chr7-114301702-1	chr7	114301202	114302202	+	888.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L4_A_Mam|LINE|RTE-X	-25586.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.58	11.52	2.77	16.19	11.66	12.06	6.34	6.63	11.87
Merged-chr4-24620585-3	chr4	24620099	24621099	+	888.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355618, intron 9 of 9)	intron (NM_001355618, intron 9 of 9)	124148.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	7.44	16.59	21.27	14.17	3.27	14.47	12.67	11.05	24.36
Merged-chr9-47671273-2	chr9	47670770	47671770	+	888.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	140918.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	35.47	30.41	28.67	40.48	32.66	28.94	7.39	7.07	10.62
Merged-chr18-38227901-3	chr18	38227412	38228412	+	888.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-18150.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	11.44	16.13	11.1	23.62	20.06	20.09	28.52	25.65	11.24
Merged-chr11-118312473-3	chr11	118312000	118313000	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011594, intron 3 of 4)	intron (NM_011594, intron 3 of 4)	-22256.0	NM_001033528	72344.0	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	12.59	10.14	11.1	33.06	28.46	29.74	34.85	22.99	7.49
Merged-chr4-59822253-3	chr4	59821701	59822701	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	RMER6A|LTR|ERVK	16551.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	36.61	31.33	13.87	31.04	25.66	17.68	27.46	24.76	4.37
Merged-chr12-75733455-3	chr12	75732939	75733939	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	2290.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	84.66	102.75	39.77	107.28	76.51	79.58	94.0	124.25	45.59
Merged-chr10-118894052-3	chr10	118893554	118894554	+	888.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25151.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	38.33	31.33	29.6	28.34	21.93	29.74	33.8	20.34	17.49
Merged-chr6-82702898-3	chr6	82702407	82703407	+	888.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50042.0	NM_025882	66979.0	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	2.29	3.69	1.85	2.7	0.93	1.61	3.17	0.0	5.0
Merged-chr18-47327223-1	chr18	47326723	47327723	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	41645.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	10.87	6.91	1.85	8.77	8.86	4.02	7.39	3.98	8.74
Merged-chr11-97279820-1	chr11	97279320	97280320	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 1 of 22)	CpG	756.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	74.37	72.34	126.72	127.52	95.17	127.8	128.85	68.54	67.45
Merged-chr7-96494153-2	chr7	96493646	96494646	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-152182.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	9.72	5.53	0.92	12.14	5.6	6.43	5.28	0.88	2.5
Merged-chr4-136891038-4	chr4	136890453	136891453	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1961.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	109.26	137.31	177.59	85.01	115.69	192.11	245.04	200.3	162.38
Merged-chr17-71704154-1	chr17	71703654	71704654	+	888.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177087, intron 10 of 19)	intron (NM_177087, intron 10 of 19)	30893.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	7.44	1.84	0.0	3.37	2.8	1.61	2.11	3.98	2.5
Merged-chr14-7972185-3	chr14	7971706	7972706	+	888.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 6 of 7)	intron (NM_007870, intron 6 of 7)	21976.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	30.32	26.26	68.45	20.92	6.06	18.49	20.07	12.82	14.99
Merged-chrUn_JH584304-4236-1	chrUn_JH584304	3736	4736	+	888.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55453.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	52.81	17.24	0.0
Merged-chr16-35982637-3	chr16	35982120	35983120	+	888.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008465)	promoter-TSS (NM_008465)	-743.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	58.92	47.46	11.1	75.57	82.11	34.56	76.05	71.19	33.1
Merged-chr13-107781966-3	chr13	107781464	107782464	+	888.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	94567.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	13.16	12.44	7.4	19.57	15.39	9.65	15.84	11.5	7.49
Merged-chr6-71632291-2	chr6	71631809	71632809	+	888.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362200, intron 1 of 25)	CpG	377.0	NM_173001	104263.0	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	137.29	140.54	154.47	172.73	151.15	130.21	175.33	154.76	129.9
Merged-chr11-83560598-3	chr11	83560094	83561094	+	888.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	18042.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	29.17	19.35	8.32	35.76	27.06	36.97	34.85	24.76	15.61
Merged-chr12-86817778-3	chr12	86817269	86818269	+	888.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67045.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	12.59	20.74	5.55	15.52	9.8	4.82	34.85	25.2	6.25
Merged-chr5-65535577-3	chr5	65535095	65536095	+	888.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1650.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	14.3	19.81	18.5	18.89	14.46	13.66	9.51	16.36	12.49
Merged-chr13-5716956-3	chr13	5716462	5717462	+	888.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	141130.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	21.74	24.42	33.3	20.24	14.93	12.06	34.85	22.55	14.36
Merged-chr7-4471359-2	chr7	4470872	4471872	+	888.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028416)	promoter-TSS (NR_028416)	-488.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	6.86	5.07	3.7	2.7	4.2	0.8	1.06	0.44	1.25
Merged-chr11-55460745-3	chr11	55460248	55461248	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	460.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	108.12	103.68	103.59	103.91	74.64	109.32	88.72	98.16	67.45
Merged-chr15-5355512-1	chr15	5355012	5356012	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111325.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.0	4.15	5.55	8.1	0.47	4.82	5.28	1.33	3.75
Merged-chr7-127303219-1	chr7	127302719	127303719	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253873, intron 7 of 30)	ORR1G|LTR|ERVL-MaLR	6959.0	NM_001253874	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	7.44	1.84	7.4	6.75	3.73	7.23	9.51	6.19	10.62
Merged-chr3-97761345-3	chr3	97760843	97761843	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	6671.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	26.31	32.72	12.95	26.31	21.93	23.31	14.79	15.03	19.36
Merged-chr14-54618003-3	chr14	54617537	54618537	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011186)	promoter-TSS (NM_011186)	-42.0	NM_011186	19173.0	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	126.42	121.19	78.62	132.24	80.71	87.61	149.98	128.23	57.46
Merged-chrX-99691148-3	chrX	99690646	99691646	+	888.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-129923.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	4.0	4.61	0.0	16.19	7.0	9.65	14.79	7.52	1.25
Merged-chr1-57775114-1	chr1	57774614	57775614	+	888.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144882, intron 1 of 13)	CpG	253.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	5.72	1.84	1.85	16.87	5.13	19.29	8.45	5.31	1.25
Merged-chr18-60501389-4	chr18	60500893	60501893	+	888.323853	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134133, exon 1 of 2)	5' UTR (NM_134133, exon 1 of 2)	590.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	32.61	24.42	22.2	35.76	34.52	35.37	14.79	12.82	5.0
Merged-chr12-36205914-2	chr12	36205429	36206429	+	888.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	12289.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	5.15	4.61	1.85	12.82	4.67	3.22	0.0	1.33	0.0
Merged-chr8-70856956-3	chr8	70856426	70857426	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032397)	promoter-TSS (NM_032397)	82.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	1.72	1.84	5.55	4.72	0.93	0.0	6.34	1.33	0.0
Merged-chr2-180701275-3	chr2	180700782	180701782	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	820.0	NM_011805	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	239.69	320.71	159.09	248.3	298.57	176.83	237.64	204.72	146.14
Merged-chr13-46634260-3	chr13	46633750	46634750	+	888.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026056, intron 7 of 12)	intron (NM_026056, intron 7 of 12)	-35272.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	1.72	3.69	1.85	2.7	1.87	4.82	2.11	1.77	3.75
Merged-chr11-35308648-2	chr11	35308152	35309152	+	888.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	187196.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	6.86	6.45	7.4	2.7	3.73	4.02	10.56	12.38	12.49
Merged-chr1-93401722-3	chr1	93401234	93402234	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207031, intron 20 of 23)	(TGG)n|Simple_repeat|Simple_repeat	27838.0	NM_001271884	404545.0	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	2.86	0.0	9.25	10.12	2.33	16.08	11.62	5.75	1.87
Merged-chr3-90084035-3	chr3	90083491	90084491	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357581, intron 1 of 8)	intron (NM_001357581, intron 1 of 8)	4470.0	NM_001293749	59069.0	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	51.48	58.98	25.9	49.93	39.19	60.28	43.3	39.35	34.97
Merged-chr4-127235975-3	chr4	127235469	127236469	+	888.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198618, intron 11 of 11)	CpG	-7815.0	NM_030252	80284.0	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	4.0	0.92	1.85	6.75	3.27	0.8	2.11	1.77	2.5
Merged-chr9-103347275-3	chr9	103346785	103347785	+	888.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 27 of 27)	RSINE1|SINE|B4	17694.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	26.89	25.8	16.65	29.69	20.99	17.68	29.57	29.18	38.1
Merged-chr11-32556616-3	chr11	32556121	32557121	+	888.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	23355.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	84.66	72.8	48.1	88.39	62.51	106.9	81.33	59.25	47.46
Merged-chr6-56691390-2	chr6	56690873	56691873	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13326.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	2.86	1.38	1.85	4.72	2.33	3.22	2.11	2.65	1.25
Merged-chr11-83619229-1	chr11	83618729	83619729	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-26142.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	8.58	15.21	7.4	41.83	32.19	34.56	42.25	18.57	23.11
Merged-chr5-29553179-3	chr5	29552692	29553692	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15243.0	NR_102704	619355.0	Mm.426744	NR_102704		Gm6083	-	developmental pluripotency associated 5 pseudogene	pseudo	5.72	2.3	3.7	5.4	8.86	11.25	5.28	3.1	5.0
Merged-chr6-58735284-2	chr6	58734798	58735798	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96167.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	9.15	3.69	3.7	10.12	6.06	8.04	1.06	7.52	1.25
Merged-chr7-81176576-1	chr7	81176076	81177076	+	888.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-37228.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	2.29	3.69	3.7	2.7	0.93	0.0	3.17	5.75	11.24
Merged-chr9-40732589-2	chr9	40732077	40733077	+	888.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	46613.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	90.38	86.63	46.25	127.52	78.37	88.42	2.11	0.0	1.87
Merged-chr10-88574162-5	chr10	88573671	88574671	+	888.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	30981.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	36.61	23.96	33.3	35.76	26.59	20.9	121.46	100.37	37.47
Merged-chr15-103260525-3	chr15	103259903	103260903	+	888.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NM_001302341	18022.0	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	36.04	43.31	29.6	34.41	27.99	34.56	69.71	62.79	37.47
Merged-chr12-64966302-3	chr12	64965849	64966849	+	888.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025707)	promoter-TSS (NM_025707)	607.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	233.97	295.36	144.29	226.71	262.64	171.21	167.93	191.9	148.01
Merged-chr14-57357199-3	chr14	57356690	57357690	+	888.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 3 of 7)	intron (NM_030004, intron 3 of 7)	41293.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	10.87	11.06	16.65	11.47	9.8	7.23	6.34	4.42	3.12
Merged-chr1-193876585-3	chr1	193876077	193877077	+	888.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	346182.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	21.17	16.59	12.95	11.47	10.26	6.43	14.79	7.07	3.75
Merged-chr14-55122130-3	chr14	55121622	55122622	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5187.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	2.29	0.46	6.47	4.05	0.0	0.0	1.06	4.42	1.25
Merged-chr14-54757227-3	chr14	54756745	54757745	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	24641.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	127.57	117.04	115.62	114.03	130.62	187.28	214.41	274.14	169.87
Merged-chr2-101696439-3	chr2	101695944	101696944	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303273, intron 6 of 6)	intron (NM_001303273, intron 6 of 6)	18024.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	5.72	8.29	2.77	2.7	6.06	5.63	6.34	9.29	9.37
Merged-chr1-181922223-3	chr1	181921723	181922723	+	888.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79822.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	18.88	9.22	24.05	9.45	14.93	20.09	22.18	10.61	9.37
Merged-chr6-85374164-1	chr6	85373664	85374664	+	888.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177466, exon 1 of 5)	exon (NM_177466, exon 1 of 5)	470.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	45.76	29.95	24.05	68.82	58.78	59.48	42.25	29.18	26.23
Merged-chr10-130247206-1	chr10	130246706	130247706	+	888.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	32932.0	NM_001329489	11923.0	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	4.58	6.45	0.0	4.72	5.13	7.23	3.17	2.65	2.5
Merged-chr14-46885029-3	chr14	46884508	46885508	+	888.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028966, exon 2 of 12)	exon (NM_028966, exon 2 of 12)	2043.0	NM_001037221	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	76.08	55.75	66.6	72.19	48.98	62.7	71.82	102.58	56.83
Merged-chr6-134824570-2	chr6	134824017	134825017	+	888.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-5682.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	2.29	4.61	3.7	6.75	2.33	2.41	6.34	5.75	1.25
Merged-chr5-92491004-3	chr5	92490515	92491515	+	888.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	14642.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	46.91	48.38	53.65	51.28	43.85	45.01	58.09	42.01	31.23
Merged-chr13-81241296-3	chr13	81240797	81241797	+	888.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	277223.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	9.72	15.67	18.5	23.62	8.4	7.23	14.79	10.61	26.85
Merged-chr2-27668002-3	chr2	27667494	27668494	+	888.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9207.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	13.16	5.99	7.4	14.84	7.46	8.04	7.39	5.75	2.5
Merged-chr19-58943010-3	chr19	58942507	58943507	+	888.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178689)	promoter-TSS (NM_178689)	-418.0	NM_178689	226265.0	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	6.86	5.99	12.95	64.77	56.45	24.11	39.08	50.85	24.36
Merged-chr5-34695713-3	chr5	34695214	34696214	+	888.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019497, intron 5 of 15)	intron (NM_019497, intron 5 of 15)	35335.0	NM_019497	14772.0	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	14.3	19.35	11.1	34.41	21.46	30.54	16.9	10.17	22.48
Merged-chr4-141161602-3	chr4	141161109	141162109	+	888.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13687.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	42.9	70.04	54.57	69.5	46.18	78.77	86.61	84.9	73.69
Merged-chr1-152608951-2	chr1	152608434	152609434	+	888.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	16283.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	68.65	61.75	36.07	71.52	35.92	32.15	78.16	47.75	42.47
Merged-chr4-145211424-3	chr4	145210897	145211897	+	888.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011610)	TTS (NM_011610)	-16392.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	54.92	65.43	55.5	43.86	31.72	35.37	83.44	84.01	39.97
Merged-chr13-63566366-3	chr13	63565838	63566838	+	888.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008957)	promoter-TSS (NM_008957)	-603.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	10.3	7.83	12.95	10.12	6.53	12.06	21.12	16.36	12.49
Merged-chr17-67976279-1	chr17	67975779	67976779	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-25339.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	10.3	2.3	6.47	1.35	3.27	1.61	2.11	2.21	7.49
Merged-chr18-67186429-3	chr18	67185944	67186944	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-18915.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	83.52	56.68	57.35	86.36	36.85	59.48	16.9	10.61	5.0
Merged-chr8-81399336-1	chr8	81398836	81399836	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	56774.0	NM_001297593	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	2.29	6.91	1.85	10.8	7.46	4.82	7.39	5.31	8.74
Merged-chr2-176708418-1	chr2	176707918	176708918	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001099327)	promoter-TSS (NM_001099327)	65.0	NM_001099327	100043387.0	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	-	predicted gene 14305	protein-coding	12.59	8.75	9.25	20.92	24.26	16.88	12.67	10.61	5.62
Merged-chr18-50053932-2	chr18	50053415	50054415	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-253.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	231.68	204.13	209.96	176.78	194.07	202.55	194.34	187.48	139.27
Merged-chr3-83790235-1	chr3	83789735	83790735	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	23914.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	5.15	5.07	7.4	5.4	5.6	4.82	4.22	1.77	1.87
Merged-chr3-108047140-3	chr3	108046644	108047644	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	26.89	15.21	7.4	18.89	13.06	13.66	11.62	14.15	3.12
Merged-chr11-51917311-2	chr11	51916765	51917765	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-50366.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	192.21	148.37	111.92	172.05	145.55	189.69	182.72	164.49	88.06
Merged-chr16-18443580-1	chr16	18443080	18444080	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353143, intron 8 of 16)	intron (NM_001353143, intron 8 of 16)	-16864.0	NM_001111062	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	2.86	2.3	0.0	7.42	0.47	0.8	3.17	1.33	5.0
Merged-chr17-83730733-3	chr17	83730278	83731278	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 3 of 16)	Lx8|LINE|L1	24615.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	65.21	87.09	61.97	86.36	51.32	86.81	67.6	65.0	49.34
Merged-chr1-171260636-1	chr1	171260136	171261136	+	888.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172845, exon 9 of 9)	3' UTR (NM_172845, exon 9 of 9)	-9692.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	1.14	1.84	13.87	1.35	0.47	2.41	2.11	3.1	2.5
Merged-chr1-124045092-1	chr1	124044592	124045592	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	467.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	7.44	0.46	2.77	2.7	1.87	3.22	2.11	1.77	1.25
Merged-chr9-41445309-1	chr9	41444809	41445809	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-29584.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	5.72	11.06	9.25	6.07	4.67	16.08	2.11	1.77	6.87
Merged-chr16-55815598-1	chr16	55815098	55816098	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159395, intron 10 of 12)	intron (NM_001159395, intron 10 of 12)	6540.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.72	4.15	6.47	8.77	3.27	0.8	8.45	5.75	8.12
Merged-chr7-35741073-2	chr7	35740562	35741562	+	888.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	B3|SINE|B2	13392.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	29.75	34.56	42.55	28.34	24.72	34.56	2.11	2.65	5.0
Merged-chr3-148899562-1	chr3	148899062	148900062	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 1 of 23)	intron (NM_001081298, intron 1 of 23)	55073.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.43	3.69	6.47	3.37	4.67	4.82	2.11	1.77	3.75
Merged-chr4-53799470-1	chr4	53798970	53799970	+	888.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19765.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	12.59	8.29	16.65	18.89	6.53	4.82	6.34	5.75	2.5
Merged-chrX-159257243-3	chrX	159256728	159257728	+	887.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148945, intron 1 of 21)	intron (NM_148945, intron 1 of 21)	1446.0	NM_001346675	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	21.74	20.27	8.32	16.19	12.6	21.7	28.52	25.65	22.48
Merged-chr3-41563724-3	chr3	41563217	41564217	+	887.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	-34.0	NM_001130185	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	61.21	77.87	66.6	61.4	69.04	36.97	59.15	69.86	36.22
Merged-chr17-21962312-2	chr17	21961802	21962802	+	887.9500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001025373)	promoter-TSS (NM_001025373)	162.0	NM_001199048	73233.0	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	70.36	106.44	52.72	71.52	87.7	65.11	148.92	103.47	72.45
Merged-chr16-33785501-3	chr16	33784994	33785994	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8543.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	10.87	8.75	5.55	2.02	7.0	2.41	17.96	11.05	7.49
Merged-chr4-57950170-3	chr4	57949674	57950674	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	intron (NM_011660, intron 3 of 4)	6237.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	32.04	34.56	23.12	30.36	30.79	52.25	59.15	48.2	53.08
Merged-chr14-64834694-3	chr14	64834219	64835219	+	887.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	115138.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	45.19	52.99	29.6	74.22	76.04	78.77	49.64	61.46	33.1
Merged-chr15-103514284-3	chr15	103513810	103514810	+	887.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285890)	promoter-TSS (NM_001285890)	-667.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	22.31	21.2	19.42	19.57	14.46	14.47	11.62	12.38	16.86
Merged-chr17-17827936-3	chr17	17827392	17828392	+	887.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	18.88	16.13	9.25	26.31	22.39	32.96	14.79	5.75	5.62
Merged-chr9-63642439-3	chr9	63641932	63642932	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151671, exon 10 of 10)	non-coding (NR_151671, exon 10 of 10)	39786.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	15.45	19.35	15.72	15.52	10.26	12.86	16.9	9.29	7.49
Merged-chr7-27933683-3	chr7	27933198	27934198	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4268.0	NM_028538	73430.0	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	6.86	11.52	12.95	10.8	7.93	24.11	6.34	2.21	6.25
Merged-chr6-35544524-3	chr6	35544022	35545022	+	887.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I-int|LTR|ERVL-MaLR	-4634.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	8.01	16.13	13.87	8.1	10.26	27.33	14.79	12.82	15.61
Merged-chr3-88454874-3	chr3	88454367	88455367	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	894.0	NM_013658	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	5.15	5.53	1.85	6.07	2.33	8.84	5.28	9.29	10.62
Merged-chr7-55874927-3	chr7	55874426	55875426	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164661, exon 7 of 32)	exon (NM_001164661, exon 7 of 32)	32855.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	15.45	20.74	21.27	12.14	7.46	15.27	20.07	9.29	13.74
Merged-chr15-73645300-3	chr15	73644777	73645777	+	887.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-20533.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	125.85	164.96	152.62	134.27	125.96	83.59	132.02	132.65	83.06
Merged-chr17-57359982-3	chr17	57359352	57360352	+	887.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 1 of 22)	intron (NM_001355722, intron 1 of 22)	1166.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	93.24	121.19	78.62	83.66	97.5	107.71	89.78	128.23	58.71
Merged-chr18-24653404-3	chr18	24652895	24653895	+	887.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-296.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	53.77	64.51	49.02	74.22	66.24	63.5	50.7	45.99	37.47
Merged-chr2-170164355-2	chr2	170163863	170164863	+	887.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21688.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	4.0	6.45	7.4	7.42	2.8	3.22	29.57	18.13	23.73
Merged-chr3-126923765-2	chr3	126923291	126924291	+	887.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001327939, exon 46 of 46)	3' UTR (NM_001327939, exon 46 of 46)	19595.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.14	1.84	7.4	2.02	1.87	0.8	7.39	6.19	4.37
Merged-chr15-98807936-3	chr15	98807383	98808383	+	887.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013741)	promoter-TSS (NM_001013741)	42.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	3.43	1.38	3.7	3.37	3.73	0.0	6.34	2.65	1.25
Merged-chr4-34510574-3	chr4	34510073	34511073	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-40042.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	9.72	9.22	9.25	3.37	5.13	4.82	5.28	4.42	9.99
Merged-chr1-193852888-3	chr1	193852400	193853400	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-345370.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	4.0	5.53	5.55	4.05	1.87	8.84	4.22	2.21	0.0
Merged-chr18-90508507-3	chr18	90508014	90509014	+	887.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAP1-MM_LTR|LTR|ERVK	-1640.0	NM_198295	67988.0	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	14.87	8.75	14.8	11.47	17.73	11.25	6.34	10.61	5.62
Merged-chr4-35100481-1	chr4	35099981	35100981	+	887.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-51574.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	25.74	35.94	19.42	32.39	24.26	22.51	22.18	10.17	19.36
Merged-chr1-95646203-1	chr1	95645703	95646703	+	887.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159745, intron 3 of 3)	intron (NM_001159745, intron 3 of 3)	21391.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	33.75	38.25	9.25	62.07	49.45	12.86	28.52	27.41	22.48
Merged-chr14-55788356-3	chr14	55787854	55788854	+	887.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019955, exon 2 of 10)	exon (NM_019955, exon 2 of 10)	503.0	NM_001164107	56532.0	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	94.39	83.86	56.42	109.98	90.04	82.79	100.34	122.92	49.34
Merged-chr16-14362297-3	chr16	14361774	14362774	+	887.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	716.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	125.85	129.48	92.5	105.93	91.44	110.92	116.18	152.11	65.58
Merged-chr4-40851704-3	chr4	40851197	40852197	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	-1559.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	152.17	146.99	117.47	145.06	117.09	109.32	191.17	196.32	119.91
Merged-chr12-17712556-3	chr12	17712054	17713054	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	21745.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	124.71	144.69	115.62	112.0	94.23	118.16	172.16	214.45	96.8
Merged-chr2-122070192-3	chr2	122069692	122070692	+	887.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145531, intron 26 of 39)	intron (NM_145531, intron 26 of 39)	41609.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	8.01	7.37	6.47	4.72	4.67	7.23	4.22	1.77	2.5
Merged-chr1-36090243-3	chr1	36089784	36090784	+	887.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21884.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	56.63	30.87	25.9	68.15	40.12	55.46	31.69	35.37	29.98
Merged-chr5-100705917-3	chr5	100705423	100706423	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152803, intron 3 of 11)	Tigger1|DNA|TcMar-Tigger	13793.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	31.46	29.95	44.4	9.45	9.8	8.04	19.01	18.13	16.86
Merged-chr7-56131760-1	chr7	56131260	56132260	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360080, intron 24 of 92)	intron (NM_001360080, intron 24 of 92)	81371.0	NM_001360080	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	12.59	14.28	15.72	10.8	9.8	15.27	12.67	16.36	12.49
Merged-chr18-12947940-3	chr18	12947456	12948456	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6115.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	14.3	7.83	8.32	10.12	9.33	10.45	6.34	7.52	6.25
Merged-chr2-60316009-1	chr2	60315509	60316509	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013825, intron 27 of 34)	intron (NM_013825, intron 27 of 34)	-31525.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	9.72	12.9	8.32	14.17	18.19	6.43	15.84	12.38	9.99
Merged-chr15-95790230-1	chr15	95789730	95790730	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001253813)	promoter-TSS (NM_001253813)	-613.0	NM_175344	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	187.63	172.33	145.22	277.98	222.99	152.72	311.57	368.77	123.66
Merged-chr15-79327479-3	chr15	79326994	79327994	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016915, intron 1 of 15)	intron (NM_016915, intron 1 of 15)	877.0	NM_016915	53357.0	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	339.23	215.19	128.57	340.06	246.32	120.57	311.57	286.08	92.43
Merged-chr18-79110416-1	chr18	79109916	79110916	+	887.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG-7115	-1025.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	1.14	3.23	1.85	7.42	4.67	1.61	5.28	2.21	1.25
Merged-chr5-102037744-3	chr5	102037242	102038242	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	32179.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	26.31	36.86	35.15	62.07	35.45	45.82	46.47	52.18	31.85
Merged-chr16-94725021-3	chr16	94724536	94725536	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	113617.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	22.88	21.2	7.4	42.51	30.32	25.72	23.24	8.4	11.24
Merged-chr12-103345222-3	chr12	103344726	103345726	+	887.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	10775.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	70.93	72.8	71.22	42.51	23.79	24.11	68.65	45.1	42.47
Merged-chr2-102831733-2	chr2	102831233	102832233	+	887.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 9 of 13)	intron (NM_001039150, intron 9 of 13)	69932.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.3	4.61	2.77	8.77	8.86	18.49	6.34	8.4	10.62
Merged-chr1-178449353-2	chr1	178448862	178449862	+	887.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 2 of 6)	intron (NM_026626, intron 2 of 6)	43344.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.57	3.69	3.7	6.75	0.47	3.22	5.28	0.88	1.25
Merged-chr2-109220588-4	chr2	109220068	109221068	+	887.6458130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	57722.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	15.45	20.27	3.7	8.1	12.13	14.47	23.24	17.69	7.49
Merged-chr2-162939835-3	chr2	162939350	162940350	+	887.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3615.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	20.59	11.06	20.35	21.59	15.86	32.96	9.51	7.07	13.74
Merged-chr1-85809444-3	chr1	85808952	85809952	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	15435.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	14.3	15.21	5.55	13.49	18.66	14.47	15.84	16.36	11.24
Merged-chr15-59413407-3	chr15	59412910	59413910	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	39212.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	42.9	29.49	17.57	60.72	42.45	32.96	42.25	42.89	28.1
Merged-chr4-120887894-3	chr4	120887403	120888403	+	887.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 5 of 7)	intron (NM_182929, intron 5 of 7)	33104.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	11.44	7.37	6.47	13.49	11.66	8.04	8.45	7.52	4.37
Merged-chr11-117912901-3	chr11	117912408	117913408	+	887.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39382.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.58	5.99	8.32	5.4	6.53	8.04	5.28	4.86	6.25
Merged-chr1-171011851-3	chr1	171011361	171012361	+	887.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7065.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	17.16	16.59	9.25	11.47	6.53	35.37	15.84	8.84	22.48
Merged-chr10-80674757-5	chr10	80674294	80675294	+	887.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	1499.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	19.45	21.66	19.42	20.24	11.66	12.86	21.12	20.34	5.0
Merged-chr13-113572223-3	chr13	113571726	113572726	+	887.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46338.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.0	3.69	8.32	5.4	3.73	4.82	19.01	4.86	3.75
Merged-chr16-17796498-3	chr16	17796002	17797002	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153790)	promoter-TSS (NM_153790)	-780.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	10.3	12.44	2.77	16.87	8.4	20.09	15.84	15.48	9.99
Merged-chr13-100681831-3	chr13	100681337	100682337	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183115, exon 4 of 12)	exon (NM_183115, exon 4 of 12)	12356.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	39.47	35.48	12.95	85.69	41.99	42.6	113.01	114.08	63.08
Merged-chr15-98977498-3	chr15	98977001	98978001	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8464.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	28.6	24.88	20.35	47.23	31.72	44.21	45.42	30.51	21.86
Merged-chr11-119875047-3	chr11	119874582	119875582	+	887.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 24 of 33)	intron (NM_028898, intron 24 of 33)	-7207.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	26.31	31.79	24.97	50.6	40.59	39.39	44.36	43.77	19.98
Merged-chr6-120478767-2	chr6	120478279	120479279	+	887.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 11 of 12)	intron (NM_008359, intron 11 of 12)	15028.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	76.08	73.73	85.1	101.88	74.64	153.52	103.51	103.91	71.2
Merged-chr2-84788492-3	chr2	84787992	84788992	+	887.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10336.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	13.16	4.15	3.7	7.42	7.0	9.65	17.96	16.36	3.75
Merged-chr3-76001395-1	chr3	76000895	76001895	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-44446.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	2.29	2.3	0.0	2.7	5.6	0.0	3.17	1.77	8.12
Merged-chr12-112589194-1	chr12	112588694	112589694	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	410.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	58.92	57.14	38.85	64.1	58.78	63.5	65.48	56.16	24.98
Merged-chr18-50054566-3	chr18	50054058	50055058	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155293)	promoter-TSS (NR_155293)	-896.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	118.42	92.16	71.22	104.58	71.84	95.65	129.91	93.74	95.55
Merged-chr12-70698484-1	chr12	70697984	70698984	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127030.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	18.31	20.27	1.85	26.31	24.72	21.7	11.62	6.63	14.36
Merged-chr11-61934804-2	chr11	61934300	61935300	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-4543.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	21.74	22.12	22.2	27.66	10.26	17.68	10.56	7.96	16.24
Merged-chr3-154842405-1	chr3	154841905	154842905	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177066, intron 21 of 24)	intron (NM_177066, intron 21 of 24)	131272.0	NM_175176	209601.0	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	2.29	0.92	0.0	1.35	2.33	4.02	1.06	2.65	3.75
Merged-chr18-36345541-1	chr18	36345041	36346041	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3083.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	10.87	3.23	7.4	5.4	5.13	4.82	2.11	3.1	5.0
Merged-chr7-19692024-4	chr7	19691451	19692451	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007469, exon 2 of 3)	exon (NM_007469, exon 2 of 3)	708.0	NM_001110009	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	78.37	98.15	72.15	180.82	150.22	141.47	275.66	376.73	103.67
Merged-chr4-62869811-1	chr4	62869311	62870311	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95763.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	1.72	2.76	0.0	6.75	2.8	0.0	4.22	1.77	0.62
Merged-chr11-97839634-1	chr11	97839134	97840134	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010688)	TTS (NM_010688)	-1146.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	7.44	3.23	0.0	6.75	5.6	7.23	38.02	12.82	3.75
Merged-chr17-13007113-2	chr17	13006607	13007607	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013671)	promoter-TSS (NM_013671)	-732.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	22.88	22.58	36.07	28.34	19.59	28.13	29.57	19.01	19.98
Merged-chr2-68888311-3	chr2	68887790	68888790	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	26849.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	22.88	19.81	11.1	26.99	15.39	17.68	51.75	22.55	9.99
Merged-chr2-158143569-1	chr2	158143069	158144069	+	887.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 1 of 12)	intron (NM_009373, intron 1 of 12)	2823.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	34.32	26.73	40.7	58.03	24.26	49.83	66.54	39.35	40.59
Merged-chr19-46641634-3	chr19	46641126	46642126	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177813, intron 1 of 3)	intron (NM_001177813, intron 1 of 3)	18225.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	38.9	25.34	36.07	29.69	19.59	32.15	27.46	18.57	18.11
Merged-chr3-106484151-1	chr3	106483651	106484651	+	887.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033207, intron 1 of 1)	intron (NR_033207, intron 1 of 1)	1701.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	112.69	118.42	133.19	122.12	111.5	118.96	157.37	136.19	66.82
Merged-chr2-21186813-4	chr2	21186276	21187276	+	887.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 4 of 4)	intron (NM_027728, intron 4 of 4)	18589.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	78.94	92.16	41.62	66.12	48.98	42.6	47.53	59.25	47.46
Merged-chr11-77984511-3	chr11	77984013	77985013	+	887.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174852, intron 2 of 14)	intron (NM_174852, intron 2 of 14)	1697.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	47.48	74.65	94.35	58.03	55.05	97.26	67.6	97.28	96.8
Merged-chr18-69571200-3	chr18	69570703	69571703	+	887.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	225043.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	22.88	42.39	8.32	35.76	38.25	24.11	17.96	21.67	11.24
Merged-chr15-25473970-2	chr15	25473533	25474533	+	887.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59841.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	3.43	3.69	4.62	4.05	2.33	5.63	0.0	0.0	9.37
Merged-chr18-77868566-3	chr18	77868078	77869078	+	887.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	ID2|SINE|ID	-69889.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	12.01	16.13	2.77	9.45	10.73	4.82	34.85	16.36	13.74
Merged-chr5-21039525-2	chr5	21039020	21040020	+	887.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	CYRA11_Mm|Unknown|Y-chromosome	-4273.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	25.74	30.87	25.9	23.62	26.59	31.35	42.25	30.07	36.85
Merged-chr14-51091609-3	chr14	51091113	51092113	+	887.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	536.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	55.49	74.65	40.7	58.03	68.58	29.74	52.81	38.91	43.72
Merged-chr10-127739532-5	chr10	127739038	127740038	+	887.3857419999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198035)	promoter-TSS (NM_198035)	0.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	42.9	24.42	50.87	41.83	24.26	32.96	47.53	39.35	33.1
Merged-chr18-82422242-3	chr18	82421753	82422753	+	887.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15476.0	NM_008082	14427.0	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	5.72	1.84	0.0	12.14	0.47	7.23	1.06	3.54	1.25
Merged-chr5-105730716-1	chr5	105730216	105731216	+	887.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	MIRb|SINE|MIR	29906.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	26.89	17.05	1.85	33.74	14.46	14.47	22.18	11.94	5.0
Merged-chr5-146824744-3	chr5	146824244	146825244	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8146.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	28.6	23.96	46.25	26.99	15.86	43.4	90.83	81.36	55.58
Merged-chr18-34507429-3	chr18	34506921	34507921	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146084)	promoter-TSS (NM_146084)	-598.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	194.5	159.43	122.09	194.99	161.41	147.9	120.41	118.06	53.08
Merged-chr3-52458878-3	chr3	52458363	52459363	+	887.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58101.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	10.87	9.68	18.5	14.17	12.13	11.25	11.62	10.61	14.36
Merged-chr6-108426435-1	chr6	108425935	108426935	+	887.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-63308.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	13.16	8.75	9.25	16.87	6.53	4.82	3.17	2.65	3.75
Merged-chr8-124922199-3	chr8	124921737	124922737	+	887.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	24351.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	48.62	45.16	49.95	35.09	39.19	27.33	26.4	17.24	19.36
Merged-chr13-106945715-3	chr13	106945238	106946238	+	887.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1391.0	NM_025447	66254.0	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	23.45	23.96	17.57	17.54	11.2	16.88	17.96	20.78	13.12
Merged-chr17-56668976-3	chr17	56668522	56669522	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4203.0	NM_001252466	71810.0	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	4.58	5.07	3.7	7.42	0.93	0.0	7.39	1.33	0.0
Merged-chr10-84147540-3	chr10	84147043	84148043	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46846.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	13.73	24.42	14.8	33.06	22.39	32.96	25.35	18.57	24.98
Merged-chr9-71165292-3	chr9	71164790	71165790	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2001.0	NM_022026	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	5.15	5.07	3.7	6.07	6.53	4.82	15.84	4.86	2.5
Merged-chr4-84862142-3	chr4	84861641	84862641	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22168.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	11.44	7.83	7.4	12.82	5.6	11.25	9.51	4.42	9.99
Merged-chr17-74570785-3	chr17	74570290	74571290	+	887.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 7 of 72)	intron (NM_007566, intron 7 of 72)	42495.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	5.15	5.53	1.85	5.4	5.13	12.86	9.51	9.29	7.49
Merged-chr19-44407925-3	chr19	44407436	44408436	+	887.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-227.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	31.46	34.56	42.55	44.53	46.18	59.48	122.52	102.58	29.98
Merged-chr19-6518771-3	chr19	6518267	6519267	+	887.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 21 of 22)	intron (NM_001205234, intron 21 of 22)	24303.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	5.15	3.23	0.0	4.72	0.47	2.41	6.34	4.42	1.25
Merged-chr2-33908570-1	chr2	33908070	33909070	+	887.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20624.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	2.29	1.84	7.4	16.87	9.8	13.66	19.01	8.4	8.12
Merged-chr13-97559080-3	chr13	97558574	97559574	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046157)	promoter-TSS (NR_046157)	-926.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	70.93	72.8	38.85	62.07	68.58	62.7	62.31	57.92	40.59
Merged-chr10-87805943-3	chr10	87805443	87806443	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52322.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	8.58	2.76	3.7	2.02	3.27	4.82	13.73	5.31	3.75
Merged-chr17-21650082-3	chr17	21649517	21650517	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166497)	promoter-TSS (NM_001166497)	-594.0	NM_001166497	73229.0	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	57.21	61.75	31.45	41.16	54.11	41.8	66.54	76.94	43.09
Merged-chrX-75382393-3	chrX	75381898	75382898	+	887.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026126)	promoter-TSS (NM_026126)	-1.0	NM_026126	67391.0	Mm.126404	NM_026126	ENSMUSG00000031198	Fundc2	4833415N24Rik|DC44|HCBP6	FUN14 domain containing 2	protein-coding	22.31	22.58	14.8	20.92	32.66	23.31	34.85	36.7	10.62
Merged-chr17-13008894-2	chr17	13008401	13009401	+	887.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013671, intron 2 of 4)	intron (NM_013671, intron 2 of 4)	1062.0	NM_013671	20656.0	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	78.37	102.29	61.05	80.29	90.5	102.88	156.32	118.94	110.54
Merged-chr17-70738415-3	chr17	70737922	70738922	+	887.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	108355.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	8.58	6.91	1.85	9.45	7.93	8.84	10.56	6.19	1.25
Merged-chr1-64446198-2	chr1	64445709	64446709	+	887.1749880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86595.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	10.87	9.22	1.85	2.02	6.06	4.82	2.11	4.86	6.25
Merged-chr3-127568971-1	chr3	127568471	127569471	+	887.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 7 of 25)	MTC|LTR|ERVL-MaLR	15482.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	2.86	4.61	3.7	3.37	1.4	0.0	23.24	21.22	12.49
Merged-chr17-35837047-3	chr17	35836479	35837479	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	1322.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	48.05	60.82	65.67	58.7	49.45	64.3	70.76	73.84	75.57
Merged-chr13-101697007-3	chr13	101696499	101697499	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-4369.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	49.77	63.13	46.25	62.07	48.98	61.09	67.6	76.05	49.34
Merged-chr4-120523302-2	chr4	120522793	120523793	+	887.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355424, intron 12 of 14)	intron (NM_001355424, intron 12 of 14)	-8938.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	14.87	9.68	7.4	5.4	8.4	6.43	4.22	6.63	4.37
Merged-chr1-36277455-3	chr1	36276957	36277957	+	887.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4032.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	5.15	5.99	0.0	6.07	2.8	1.61	5.28	4.42	9.37
Merged-chr12-3868749-3	chr12	3868243	3869243	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007872, intron 4 of 22)	intron (NM_007872, intron 4 of 22)	-6499.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	167.04	172.79	95.27	217.26	149.28	132.63	148.92	157.85	87.43
Merged-chr6-125084579-3	chr6	125084100	125085100	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11381.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	11.44	7.37	11.1	14.84	10.26	4.82	4.22	8.4	16.86
Merged-chr14-118591702-3	chr14	118591196	118592196	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105815)	TTS (NR_105815)	776.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	10.3	0.0	1.85	4.72	0.93	1.61	5.28	0.88	3.75
Merged-chr11-76612819-3	chr11	76612363	76613363	+	887.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35124.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	28.6	42.85	34.22	65.45	37.79	21.7	46.47	51.29	26.23
Merged-chr10-20893569-2	chr10	20893085	20894085	+	887.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58962.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	9.15	7.83	5.55	14.84	10.73	8.04	16.9	13.27	7.49
Merged-chr12-9002261-3	chr12	9001750	9002750	+	887.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172470, intron 12 of 27)	intron (NM_172470, intron 12 of 27)	-27747.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	8.01	1.38	3.7	5.4	0.47	3.22	4.22	5.31	3.75
Merged-chr6-121272692-3	chr6	121272193	121273193	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26787.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	11.44	37.78	24.05	17.54	25.66	30.54	22.18	36.26	26.85
Merged-chr2-104710921-3	chr2	104710427	104711427	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 1 of 9)	L2c|LINE|L2	1235.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	28.6	39.17	22.2	52.63	47.58	35.37	45.42	25.2	18.11
Merged-chr15-91673166-3	chr15	91672677	91673677	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-47.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	4.0	3.23	1.85	10.8	5.13	6.43	7.39	4.86	5.0
Merged-chr13-80881922-3	chr13	80881409	80882409	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1475.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	20.59	16.59	8.32	11.47	10.73	15.27	16.9	19.01	11.87
Merged-chr10-57632062-3	chr10	57631585	57632585	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008863, exon 1 of 6)	5' UTR (NM_008863, exon 1 of 6)	104.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	12.01	4.61	14.8	12.14	10.26	4.82	6.34	3.1	2.5
Merged-chr6-37213099-3	chr6	37212595	37213595	+	887.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	86881.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	12.59	7.83	19.42	13.49	13.53	19.29	12.67	3.1	7.49
Merged-chr5-146798233-3	chr5	146797733	146798733	+	887.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3277.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	25.17	22.12	27.75	24.96	13.06	30.54	83.44	78.71	51.21
Merged-chr1-74362070-3	chr1	74361587	74362587	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033345)	promoter-TSS (NM_001033345)	-21.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	8.01	5.07	1.85	18.22	10.73	16.08	11.62	13.71	7.49
Merged-chr15-66297641-1	chr15	66297141	66298141	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11417.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	2.29	3.69	0.0	4.72	3.27	4.82	0.0	1.33	1.25
Merged-chr8-14815258-2	chr8	14814746	14815746	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-73290.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	26.31	32.25	22.2	23.62	23.33	26.53	44.36	48.2	30.6
Merged-chr14-31388527-1	chr14	31388027	31389027	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	B4|SINE|B4	29150.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	38.9	62.67	44.4	74.89	52.72	83.59	46.47	57.04	28.1
Merged-chr4-135898560-3	chr4	135898053	135899053	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009924, intron 1 of 1)	MIRb|SINE|MIR	3364.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	10.3	13.82	18.5	29.01	28.46	20.09	34.85	13.27	3.12
Merged-chr7-142386830-3	chr7	142386359	142387359	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009983, intron 1 of 8)	intron (NM_009983, intron 1 of 8)	1011.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	114.98	135.93	111.92	107.28	128.76	114.94	218.63	210.47	89.31
Merged-chr11-109298188-2	chr11	109297655	109298655	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011268)	promoter-TSS (NM_011268)	26.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	1.14	2.3	3.7	5.4	0.0	6.43	2.11	3.54	0.0
Merged-chr15-93595922-1	chr15	93595422	93596422	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033217)	promoter-TSS (NM_001033217)	-31.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	2.86	1.84	0.0	2.02	3.27	0.0	4.22	0.88	2.5
Merged-chr17-83513864-2	chr17	83513368	83514368	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	465.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	208.23	248.36	169.27	190.95	201.53	157.54	242.92	277.24	162.38
Merged-chr2-11548259-1	chr2	11547759	11548759	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	ID4|SINE|ID	5670.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	33.18	29.95	26.82	24.29	21.46	19.29	21.12	17.69	18.11
Merged-chr13-9255200-1	chr13	9254700	9255700	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-21325.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	21.74	8.75	10.17	12.14	7.93	8.04	16.9	15.48	6.87
Merged-chr15-77096478-1	chr15	77095978	77096978	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_108037)	TTS (NR_108037)	12080.0	NR_108037	74303.0	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	3.43	2.3	2.77	4.05	3.27	1.61	4.22	0.88	1.25
Merged-chrX-121469551-1	chrX	121469051	121470051	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	927834.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	2.86	3.69	1.85	4.72	4.67	6.43	0.0	0.44	2.5
Merged-chr1-106389871-2	chr1	106389367	106390367	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 16 of 17)	exon (NM_133821, exon 16 of 17)	156764.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.72	6.45	9.25	7.42	1.4	3.22	3.17	0.0	4.37
Merged-chrX-167151631-1	chrX	167151131	167152131	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57587.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	17.16	8.29	12.95	12.14	9.33	11.25	6.34	9.29	6.87
Merged-chr13-91599780-1	chr13	91599280	91600280	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	MTC|LTR|ERVL-MaLR	138683.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	3.43	6.45	3.7	6.07	3.27	15.27	2.11	1.33	6.25
Merged-chr2-144274956-1	chr2	144274456	144275456	+	887.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355688, intron 2 of 4)	intron (NM_001355688, intron 2 of 4)	4052.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	6.86	9.22	12.95	3.37	7.0	11.25	11.62	7.96	6.25
Merged-chr14-53082088-1	chr14	53081588	53082588	+	887.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42622.0	NR_155501	102632039.0	Mm.410779	NR_155501		Gm30214	-	predicted gene, 30214	ncRNA	0.0	0.92	0.0	0.67	1.4	0.0	6.34	13.71	5.0
Merged-chr16-76283644-4	chr16	76283227	76284227	+	887.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89322.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	8.58	6.91	5.55	7.42	5.13	4.82	8.45	1.77	3.12
Merged-chr15-27688284-3	chr15	27687775	27688775	+	886.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6733.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	14.87	16.59	16.65	27.66	14.46	16.08	11.62	4.42	8.12
Merged-chr4-116464795-3	chr4	116464270	116465270	+	886.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008641)	promoter-TSS (NM_008641)	-589.0	NM_008641	17776.0	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	14.3	14.28	9.25	22.27	10.73	30.54	12.67	14.15	19.98
Merged-chr1-34826095-3	chr1	34825600	34826600	+	886.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160235, intron 3 of 7)	intron (NM_001160235, intron 3 of 7)	16950.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	17.73	21.2	14.8	31.04	37.32	44.21	40.14	34.49	26.85
Merged-chr1-165193516-2	chr1	165193011	165194011	+	886.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	922.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	44.62	44.24	24.97	34.41	35.92	57.07	66.54	67.65	36.22
Merged-chr3-135420726-3	chr3	135420219	135421219	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025902, intron 1 of 2)	intron (NM_025902, intron 1 of 2)	2714.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	137.29	162.66	72.15	139.67	134.82	102.88	179.55	212.68	93.68
Merged-chr4-122898511-3	chr4	122898012	122899012	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12436.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	13.73	15.67	3.7	13.49	14.0	9.65	28.52	34.49	16.86
Merged-chr13-23712175-3	chr13	23711674	23712674	+	886.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-1320.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	30.89	46.54	37.0	45.88	27.06	39.39	41.19	61.02	37.47
Merged-chr19-28964171-5	chr19	28963687	28964687	+	886.88092	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198651)	promoter-TSS (NM_198651)	-33.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	32.61	22.58	31.45	43.18	25.19	53.05	48.58	27.86	28.73
Merged-chr2-35979376-4	chr2	35978892	35979892	+	886.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029774, exon 1 of 10)	exon (NM_029774, exon 1 of 10)	232.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	145.3	81.1	75.85	189.6	113.36	47.42	140.47	53.5	41.84
Merged-chr11-94133491-3	chr11	94132999	94133999	+	886.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77955.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	8.58	7.83	6.47	14.84	7.93	4.82	12.67	3.54	3.12
Merged-chr12-35418126-3	chr12	35417612	35418612	+	886.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116877.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	9.15	4.61	16.65	4.72	4.2	10.45	14.79	8.4	7.49
Merged-chr11-62185088-2	chr11	62184572	62185572	+	886.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 10 of 12)	intron (NM_001029936, intron 10 of 12)	-63912.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	4.58	4.15	9.25	6.75	2.8	11.25	1.06	2.65	2.5
Merged-chr5-76905017-2	chr5	76904533	76905533	+	886.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173765, intron 1 of 15)	RSINE1|SINE|B4	481.0	NM_173765	231326.0	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	76.66	98.61	86.02	97.83	157.68	102.08	127.8	160.06	59.95
Merged-chr11-86356322-2	chr11	86355835	86356835	+	886.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	1190.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	69.22	111.97	64.75	124.15	110.56	91.63	140.47	164.49	60.58
Merged-chr4-139238791-1	chr4	139238291	139239291	+	886.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	44680.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	16.59	17.51	10.17	43.86	32.19	35.37	14.79	8.4	8.74
Merged-chr19-21052096-1	chr19	21051596	21052596	+	886.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52614.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	4.0	4.15	0.0	15.52	20.99	11.25	8.45	12.38	6.25
Merged-chrX-103186618-3	chrX	103186137	103187137	+	886.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008671)	promoter-TSS (NM_008671)	27.0	NM_008671	17954.0	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	4.0	1.38	0.0	2.02	1.4	4.02	2.11	1.33	0.0
Merged-chr5-134572973-3	chr5	134572415	134573415	+	886.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106087)	TTS (NR_106087)	839.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	47.48	41.93	27.75	55.33	36.39	31.35	47.53	50.85	24.36
Merged-chr16-62940769-3	chr16	62940262	62941262	+	886.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86455.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	10.87	7.83	0.0	4.05	5.13	1.61	5.28	7.96	3.75
Merged-chr12-40564437-3	chr12	40563923	40564923	+	886.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118370.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	52.63	42.39	42.55	45.21	38.25	53.85	32.74	29.63	48.71
Merged-chr18-20743026-3	chr18	20742539	20743539	+	886.7777710000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3365.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	30.32	39.63	23.12	68.82	48.05	47.42	62.31	62.35	26.85
Merged-chr18-3983149-2	chr18	3982653	3983653	+	886.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-182679.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	12.01	28.11	22.2	26.99	15.86	40.99	41.19	34.05	34.97
Merged-chr12-11276724-5	chr12	11276209	11277209	+	886.757141	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361252, intron 4 of 9)	(TG)n|Simple_repeat|Simple_repeat	10823.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	32.04	17.51	21.27	14.17	12.13	36.17	26.4	14.59	24.36
Merged-chr18-60811448-4	chr18	60810958	60811958	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_039567)	promoter-TSS (NR_039567)	-618.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	18.88	11.06	19.42	6.07	0.47	14.47	9.51	11.5	11.24
Merged-chr15-97727371-2	chr15	97726879	97727879	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168693, intron 1 of 9)	intron (NM_001168693, intron 1 of 9)	4026.0	NM_001168693	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	36.61	30.87	32.37	44.53	58.78	23.31	4.22	6.19	1.25
Merged-chr1-111864242-2	chr1	111863757	111864757	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081316, exon 1 of 2)	5' UTR (NM_001081316, exon 1 of 2)	661.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	13.16	17.51	27.75	35.09	26.12	34.56	28.52	24.76	14.99
Merged-chr13-115900924-2	chr13	115900429	115901429	+	886.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	408759.0	NM_021459	16392.0	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	9.15	7.83	5.55	37.11	43.85	54.66	39.08	45.54	31.23
Merged-chr4-12427697-2	chr4	12427226	12428226	+	886.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-255711.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	41.19	54.37	34.22	39.13	27.06	29.74	27.46	38.03	21.23
Merged-chr12-102296126-1	chr12	102295626	102296626	+	886.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	12485.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	40.62	17.97	22.2	40.48	15.86	39.39	27.46	7.52	19.98
Merged-chr4-40876946-3	chr4	40876507	40877507	+	886.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22470.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	9.72	3.23	9.25	11.47	9.8	11.25	3.17	4.42	1.25
Merged-chr17-5806235-2	chr17	5805745	5806745	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6755.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	13.16	13.36	18.5	20.92	7.0	6.43	21.12	10.61	4.37
Merged-chr16-92783818-1	chr16	92783318	92784318	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	42256.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.58	9.68	5.55	11.47	7.93	12.86	3.17	3.98	3.75
Merged-chr2-16131754-3	chr2	16131241	16132241	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310455, intron 33 of 38)	L2|LINE|L2	-224563.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	1.14	2.76	5.55	5.4	5.6	4.82	4.22	5.31	10.62
Merged-chr16-62813994-1	chr16	62813494	62814494	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026588)	promoter-TSS (NM_026588)	-682.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	4.0	9.68	9.25	6.07	5.6	5.63	5.28	8.84	6.87
Merged-chr4-85695387-1	chr4	85694887	85695887	+	886.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-358528.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	3.43	2.3	5.55	0.67	4.67	0.0	8.45	4.42	7.49
Merged-chr2-38545246-3	chr2	38544739	38545739	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	MIRc|SINE|MIR	33363.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.15	6.45	3.7	4.72	4.67	6.43	6.34	2.21	1.25
Merged-chr3-144698581-1	chr3	144698081	144699081	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21754.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	383.28	345.13	212.74	328.59	277.57	244.35	305.24	363.46	180.49
Merged-chr4-137837987-3	chr4	137837468	137838468	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24269.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	32.61	18.89	17.57	47.23	31.26	53.85	17.96	11.5	11.87
Merged-chr6-94284790-1	chr6	94284290	94285290	+	886.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286784)	promoter-TSS (NM_001286784)	-873.0	NM_001286785	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	4.0	1.38	3.7	16.87	5.6	9.65	6.34	1.33	1.25
Merged-chr1-153553717-3	chr1	153553222	153554222	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4008.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	16.02	15.67	18.5	11.47	12.13	16.88	17.96	5.31	10.62
Merged-chr13-52619693-3	chr13	52619238	52620238	+	886.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	22856.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	38.9	48.38	65.67	74.89	52.25	69.93	35.91	48.64	29.35
Merged-chr14-58271534-2	chr14	58271028	58272028	+	886.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	198842.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.58	1.38	7.4	8.77	3.27	8.84	14.79	7.52	6.87
Merged-chr5-92349673-4	chr5	92349194	92350194	+	886.6458130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021274)	promoter-TSS (NM_021274)	-805.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	203.65	203.67	115.62	143.04	106.36	92.44	186.94	225.95	113.66
Merged-chr11-100761849-3	chr11	100761321	100762321	+	886.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010410, exon 2 of 2)	exon (NM_010410, exon 2 of 2)	1110.0	NM_010410	15171.0	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	16.59	6.91	6.47	0.67	1.87	4.82	16.9	10.61	6.87
Merged-chr13-97607344-3	chr13	97606834	97607834	+	886.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47334.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	5.72	3.23	1.85	2.02	4.67	3.22	3.17	0.0	5.0
Merged-chr9-96725956-2	chr9	96725448	96726448	+	886.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175537, intron 1 of 2)	intron (NM_175537, intron 1 of 2)	5727.0	NM_175537	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	4.58	5.53	2.77	4.05	2.33	3.22	0.0	1.77	6.25
Merged-chr8-13624169-3	chr8	13623673	13624673	+	886.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53414.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	42.33	29.03	17.57	62.75	67.64	88.42	16.9	13.27	11.24
Merged-chr13-21714918-3	chr13	21714418	21715418	+	886.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178199)	TTS (NM_178199)	1225.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	26.89	13.36	5.55	10.8	2.8	8.04	9.51	16.36	21.23
Merged-chr15-31542116-3	chr15	31541603	31542603	+	886.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11066.0	NM_172606	223455.0	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	17.16	7.37	12.02	10.8	13.06	6.43	3.17	7.07	2.5
Merged-chr13-59889939-2	chr13	59889436	59890436	+	886.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66789.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	6.86	10.14	0.0	5.4	1.87	3.22	8.45	1.77	3.12
Merged-chr19-57591013-3	chr19	57590504	57591504	+	886.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20030.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	9.72	4.15	3.7	4.05	9.8	1.61	5.28	1.33	2.5
Merged-chr12-82151192-3	chr12	82150690	82151690	+	886.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18826.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.43	5.99	7.4	21.59	12.6	12.06	15.84	22.99	11.24
Merged-chr19-45790762-3	chr19	45790262	45791262	+	886.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7209.0	NM_023799	76055.0	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	Hy5|Ncoat|OGA	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	20.59	25.8	18.5	45.88	19.13	32.96	41.19	35.82	21.23
Merged-chr8-116951104-3	chr8	116950616	116951616	+	886.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	7723.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	16.02	11.06	16.65	14.17	10.73	15.27	15.84	6.63	18.74
Merged-chr7-115084899-3	chr7	115084408	115085408	+	886.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	133634.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.0	6.91	4.62	14.17	14.46	18.49	7.39	2.65	0.0
Merged-chr8-33673366-2	chr8	33672872	33673872	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 4 of 12)	B2_Mm2|SINE|B2	20134.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	28.6	17.97	14.8	35.09	41.99	48.23	267.21	331.63	118.04
Merged-chr7-115124915-1	chr7	115124415	115125415	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	173641.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	34.32	23.5	34.22	33.74	31.72	39.39	26.4	20.34	26.85
Merged-chr8-75151049-3	chr8	75150552	75151552	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41543.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	72.08	57.6	46.25	47.23	40.12	58.68	80.27	68.54	54.96
Merged-chr15-59823395-1	chr15	59822895	59823895	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28436.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	7.44	5.99	5.55	11.47	11.2	11.25	16.9	6.19	3.12
Merged-chr18-52750061-4	chr18	52749565	52750565	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17746.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	18.88	12.44	9.25	40.48	32.66	16.88	28.52	22.55	8.12
Merged-chr9-61332414-2	chr9	61331896	61332896	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38587.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	13.16	4.15	11.1	6.75	2.33	4.82	3.17	4.86	6.87
Merged-chr19-24271505-1	chr19	24271005	24272005	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008044, intron 3 of 4)	intron (NM_008044, intron 3 of 4)	9081.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	21.17	18.43	15.72	14.84	20.99	11.25	16.9	12.82	5.62
Merged-chr12-52304133-3	chr12	52303639	52304639	+	886.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 9 of 10)	intron (NM_029760, intron 9 of 10)	176470.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	24.03	14.75	32.37	19.57	11.2	4.82	29.57	31.39	24.98
Merged-chr11-96400928-2	chr11	96400421	96401421	+	886.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35163.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	13.73	22.12	7.4	35.76	44.32	47.42	22.18	9.73	14.36
Merged-chr6-121184948-3	chr6	121184440	121185440	+	886.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028730, intron 1 of 4)	intron (NM_028730, intron 1 of 4)	1273.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	8.01	3.69	5.55	5.4	2.8	8.84	4.22	8.4	13.74
Merged-chr14-21707110-3	chr14	21706604	21707604	+	886.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013826, intron 1 of 3)	intron (NM_001013826, intron 1 of 3)	7472.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	33.75	18.43	21.27	34.41	15.86	16.88	12.67	6.19	12.49
Merged-chr2-27766952-7	chr2	27766537	27767537	+	886.4285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56454.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	53.77	28.11	38.85	45.21	18.66	44.21	30.63	18.57	35.6
Merged-chr4-9645562-2	chr4	9645073	9646073	+	886.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTC|LTR|ERVL-MaLR	-1856.0	NM_001177852	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.72	10.14	3.7	10.12	6.53	7.23	31.69	23.43	19.36
Merged-chr12-17682556-4	chr12	17682094	17683094	+	886.392822	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	-8215.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	76.66	87.09	67.52	70.17	54.11	60.28	97.17	89.32	37.47
Merged-chr18-80464936-3	chr18	80464427	80465427	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	RLTR12B|LTR|ERVK	4740.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	5.15	5.07	7.4	6.75	5.6	13.66	3.17	7.52	6.87
Merged-chr19-45652572-3	chr19	45652070	45653070	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	7623.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	45.76	27.19	14.8	43.86	34.52	30.54	32.74	47.31	18.74
Merged-chr19-10555802-3	chr19	10555291	10556291	+	886.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	-28.0	NM_001277860	68642.0	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	16.59	6.45	9.25	9.45	14.93	16.88	12.67	8.84	14.36
Merged-chr5-24674426-2	chr5	24673915	24674915	+	886.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-11400.0	NM_016736	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	2.29	2.3	3.7	2.7	0.47	1.61	1.06	0.44	2.5
Merged-chr9-70740172-3	chr9	70739674	70740674	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007399, exon 5 of 16)	exon (NM_007399, exon 5 of 16)	61192.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	16.59	12.9	20.35	14.17	10.73	18.49	10.56	14.59	15.61
Merged-chr1-86466073-3	chr1	86465558	86466558	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	39729.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	19.45	23.04	7.4	15.52	21.46	12.06	16.9	16.36	11.24
Merged-chr2-50854041-3	chr2	50853532	50854532	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55652.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	13.16	6.45	5.55	9.45	1.4	1.61	3.17	1.77	5.0
Merged-chr6-113662058-3	chr6	113661559	113662559	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	23592.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	192.78	130.4	111.92	195.67	101.7	122.98	200.68	158.3	103.05
Merged-chr3-106474402-3	chr3	106473906	106474906	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-8025.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	9.72	17.05	12.02	15.52	15.86	9.65	27.46	22.55	24.36
Merged-chr17-26753696-3	chr17	26753232	26754232	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-27347.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	41.76	37.32	29.6	44.53	45.72	51.44	61.26	62.79	15.61
Merged-chr3-98057138-3	chr3	98056624	98057624	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	43586.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	21.74	12.9	7.4	36.43	25.66	20.9	11.62	11.94	9.99
Merged-chr2-92192046-3	chr2	92191555	92192555	+	886.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035480)	promoter-TSS (NR_035480)	78.0	NR_035480	100316756.0		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA	12.01	8.29	6.47	9.45	6.06	3.22	9.51	6.63	8.74
Merged-chr9-15494135-1	chr9	15493635	15494635	+	886.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 1 of 2)	CpG	703.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	6.29	2.3	3.7	6.07	1.87	4.82	0.0	1.33	1.25
Merged-chr13-64040034-1	chr13	64039534	64040534	+	886.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49167.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	4.0	2.3	1.85	24.96	10.73	27.33	10.56	5.31	9.99
Merged-chr6-148436621-3	chr6	148436118	148437118	+	886.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	7734.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	13.73	11.52	15.72	19.57	11.2	14.47	21.12	11.5	7.49
Merged-chr15-93252638-2	chr15	93252141	93253141	+	886.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	22538.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	108.12	112.89	62.9	66.12	49.92	31.35	28.52	38.47	19.98
Merged-chr1-36121401-3	chr1	36120900	36121900	+	886.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22913.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	11.44	4.15	5.55	17.54	10.73	3.22	8.45	9.73	1.25
Merged-chr18-57657042-3	chr18	57656548	57657548	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	MTD|LTR|ERVL-MaLR	-18463.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	20.02	22.12	18.5	17.54	27.06	22.51	24.29	33.6	12.49
Merged-chr12-17011680-3	chr12	17011169	17012169	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001201332)	promoter-TSS (NM_001201332)	58.0	NM_001201332	73667.0	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	3.43	5.07	5.55	4.05	4.67	0.0	2.11	0.88	4.37
Merged-chr18-44812178-3	chr18	44811663	44812663	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085373)	promoter-TSS (NM_001085373)	19.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.0	3.69	8.32	4.05	5.6	0.0	2.11	2.65	3.75
Merged-chr6-30546946-3	chr6	30546449	30547449	+	886.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024698, intron 4 of 10)	intron (NM_001024698, intron 4 of 10)	5307.0	NM_001024698	232680.0	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	4.0	5.99	0.0	7.42	3.27	0.0	7.39	1.33	1.87
Merged-chr2-124616937-3	chr2	124616439	124617439	+	886.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	6643.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	62.93	52.53	45.32	50.6	33.59	57.87	46.47	61.9	36.22
Merged-chr18-62178925-5	chr18	62178429	62179429	+	886.26001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007420, exon 1 of 1)	exon (NM_007420, exon 1 of 1)	1052.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	230.54	246.98	143.37	194.99	165.14	135.04	164.76	160.06	129.28
Merged-chr13-113493180-2	chr13	113492677	113493677	+	886.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	9667.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	8.01	0.92	1.85	4.72	6.53	12.86	5.28	2.65	3.75
Merged-chr1-74379141-3	chr1	74378658	74379658	+	886.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	3955.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	42.9	61.75	62.9	41.83	35.45	63.5	85.55	81.36	65.58
Merged-chr7-141395008-3	chr7	141394528	141395528	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	2868.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	37.18	31.33	29.6	43.86	31.26	49.03	26.4	29.63	29.35
Merged-chr2-174343696-3	chr2	174343158	174344158	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	13569.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	81.8	139.62	74.0	116.05	139.02	75.56	115.12	153.87	94.3
Merged-chr6-86504379-3	chr6	86503906	86504906	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16179.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	68.07	67.27	36.07	66.8	75.57	74.75	79.21	85.78	49.96
Merged-chr10-81185107-3	chr10	81184609	81185609	+	886.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 2 of 8)	intron (NM_001190473, intron 2 of 8)	1191.0	NM_007828	13144.0	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	18.31	11.52	11.1	5.4	3.73	8.84	12.67	4.86	5.0
Merged-chr4-41346610-3	chr4	41346086	41347086	+	886.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-2410.0	NM_001355509	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	53.2	76.03	55.5	51.95	50.38	48.23	64.43	43.77	45.59
Merged-chr15-68167997-3	chr15	68167500	68168500	+	886.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152182, intron 8 of 13)	intron (NR_152182, intron 8 of 13)	90856.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	7.44	5.99	13.87	11.47	11.66	19.29	7.39	8.4	7.49
Merged-chr11-106677977-1	chr11	106677477	106678477	+	886.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	37304.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	23.45	15.21	25.9	18.89	7.46	19.29	9.51	7.96	7.49
Merged-chr18-21725478-2	chr18	21724970	21725970	+	886.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73102.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	8.58	7.37	12.95	8.1	5.6	8.84	2.11	3.98	2.5
Merged-chr7-141092521-3	chr7	141092031	141093031	+	886.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355055, intron 6 of 9)	CpG	8015.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	5.15	6.91	3.7	3.37	1.87	1.61	2.11	2.65	5.62
Merged-chr1-162000041-3	chr1	161999561	162000561	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-4908.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	28.03	27.19	7.4	28.34	38.25	29.74	34.85	27.41	15.61
Merged-chr10-62324052-3	chr10	62323525	62324525	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	Lx5b|LINE|L1	16396.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	9.15	9.22	5.55	8.1	11.66	11.25	15.84	13.71	12.49
Merged-chr4-123618207-3	chr4	123617703	123618703	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	1783.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	31.46	18.89	24.97	21.59	19.59	36.97	35.91	24.76	23.73
Merged-chr5-16541925-3	chr5	16541420	16542420	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11575.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.0	5.53	11.1	10.12	7.0	12.86	11.62	4.86	9.99
Merged-chr1-120430333-2	chr1	120429829	120430829	+	886.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	74695.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	6.86	4.15	4.62	4.72	1.4	0.0	7.39	6.19	5.0
Merged-chr13-26317209-2	chr13	26316706	26317706	+	886.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-4800.0	NR_045933	73576.0	Mm.45473	NR_045933	ENSMUSG00000084811	1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	4.58	2.76	0.0	1.35	2.33	0.0	8.45	4.86	3.75
Merged-chr1-93072648-3	chr1	93072164	93073164	+	886.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294150, intron 8 of 46)	intron (NM_001294150, intron 8 of 46)	9816.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	28.6	19.81	22.2	20.92	14.46	21.7	22.18	10.17	11.87
Merged-chr6-87547588-2	chr6	87547092	87548092	+	886.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14333.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	24.6	16.59	26.82	27.66	22.86	17.68	66.54	68.54	25.61
Merged-chr7-80370785-3	chr7	80370336	80371336	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172903, exon 2 of 24)	5' UTR (NM_172903, exon 2 of 24)	539.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	53.2	40.09	59.2	70.17	44.78	87.61	116.18	93.3	33.1
Merged-chr1-60961233-3	chr1	60960729	60961729	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16685.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	26.89	26.26	29.6	26.31	20.99	28.94	25.35	26.09	28.73
Merged-chr18-8677654-3	chr18	8677159	8678159	+	886.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-535197.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	22.31	36.86	12.95	16.19	19.59	13.66	44.36	56.6	38.72
Merged-chr2-27744853-3	chr2	27744357	27745357	+	886.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 4 of 9)	intron (NM_001290481, intron 4 of 9)	34274.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	50.34	34.1	44.4	38.46	46.65	61.09	36.97	47.31	42.47
Merged-chr13-5871531-3	chr13	5871021	5872021	+	886.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10032.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	28.6	33.18	9.25	46.56	51.32	33.76	16.9	26.53	9.99
Merged-chr17-48101067-3	chr17	48100602	48101602	+	886.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10724.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	9.15	1.84	0.92	2.02	1.87	4.82	2.11	1.77	0.62
Merged-chr19-4269207-2	chr19	4268691	4269691	+	886.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356620)	promoter-TSS (NM_001356620)	42.0	NM_001356620	245857.0	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	SSH-3|SSH-3L	slingshot protein phosphatase 3	protein-coding	36.61	18.89	27.75	33.74	26.59	36.97	16.9	11.94	3.75
Merged-chr1-152813813-3	chr1	152813280	152814280	+	886.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 3 of 15)	RLTR28|LTR|ERVL	13627.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	19.45	17.51	37.92	16.19	17.26	40.99	19.01	27.41	22.48
Merged-chr17-70989676-3	chr17	70989175	70990175	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	841.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	159.03	149.75	117.47	121.45	118.49	122.18	139.42	143.26	97.43
Merged-chr14-79482417-3	chr14	79481924	79482924	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-1156.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	152.17	164.5	153.54	170.7	193.13	163.97	186.94	206.49	124.28
Merged-chr11-76646177-3	chr11	76645667	76646667	+	886.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26303.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	8.01	2.76	0.92	10.8	4.67	3.22	3.17	3.54	1.25
Merged-chr4-129795542-3	chr4	129795025	129796025	+	886.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24954.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	87.52	59.9	59.2	54.65	62.51	44.21	30.63	31.39	14.99
Merged-chr9-45396099-1	chr9	45395599	45396599	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_022004)	TTS (NM_022004)	-3610.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	9.15	10.6	5.55	10.12	10.73	9.65	6.34	5.75	3.75
Merged-chr14-70062550-1	chr14	70062050	70063050	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14895.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	120.7	82.02	45.32	117.4	53.65	63.5	122.52	122.48	57.46
Merged-chr4-141871563-2	chr4	141871044	141872044	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	3376.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	224.82	283.84	251.59	199.04	226.72	224.26	274.61	307.75	181.11
Merged-chr10-12940772-1	chr10	12940272	12941272	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029075, exon 3 of 3)	3' UTR (NM_029075, exon 3 of 3)	-17645.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	2.86	0.92	2.77	8.77	4.67	8.84	5.28	0.44	5.0
Merged-chr8-111570666-2	chr8	111570147	111571147	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	L1MEd|LINE|L1	32304.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	9.15	2.76	3.7	4.72	7.0	1.61	6.34	4.42	7.49
Merged-chr14-47393583-1	chr14	47393083	47394083	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 15 of 18)	intron (NM_144553, intron 15 of 18)	19723.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	15.45	12.44	12.95	25.64	12.6	19.29	5.28	3.54	6.25
Merged-chr4-145230833-1	chr4	145230333	145231333	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	16037.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	26.31	44.24	27.75	35.09	43.39	50.64	42.25	27.86	27.48
Merged-chr3-84512989-1	chr3	84512489	84513489	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293801, intron 6 of 7)	intron (NM_001293801, intron 6 of 7)	-32550.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	3.43	4.15	0.0	1.35	2.8	8.04	2.11	3.54	1.25
Merged-chr10-94487340-2	chr10	94486838	94487838	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIR|SINE|MIR	-27519.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	31.46	30.41	24.97	43.18	37.79	43.4	22.18	20.78	13.12
Merged-chr18-38993618-1	chr18	38993118	38994118	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175164, exon 1 of 23)	exon (NM_175164, exon 1 of 23)	473.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	24.6	27.65	13.87	36.43	29.39	17.68	32.74	16.36	4.37
Merged-chr19-36766379-1	chr19	36765879	36766879	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-29775.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	1.72	1.84	3.7	4.05	4.67	0.0	7.39	2.65	4.37
Merged-chr12-102506209-1	chr12	102505709	102506709	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36299.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	2.86	2.3	3.7	5.4	5.13	6.43	4.22	1.77	2.5
Merged-chr11-31891216-1	chr11	31890716	31891716	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	20276.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	18.31	18.43	11.1	52.63	50.38	31.35	25.35	14.15	5.0
Merged-chr6-136988673-1	chr6	136988173	136989173	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34150.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.72	3.23	0.0	3.37	3.73	4.82	8.45	8.4	11.24
Merged-chrX-10904258-1	chrX	10903758	10904758	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186893.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	1.14	1.38	5.55	3.37	1.87	3.22	2.11	1.77	3.75
Merged-chr16-65201491-3	chr16	65201010	65202010	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95726.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	8.58	3.23	0.0	7.42	11.2	16.88	8.45	7.96	6.25
Merged-chr11-119355966-1	chr11	119355466	119356466	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018822)	promoter-TSS (NM_018822)	409.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	115.55	78.33	64.75	91.76	70.44	60.28	135.19	100.81	53.08
Merged-chr8-33664667-1	chr8	33664167	33665167	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	RLTR6_Mm|LTR|ERV1	11429.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.86	0.46	0.0	0.67	0.93	0.0	46.47	27.86	33.72
Merged-chr10-75781417-3	chr10	75780919	75781919	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133994)	promoter-TSS (NM_133994)	3.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	12.59	21.2	11.1	23.62	19.59	12.86	14.79	14.59	12.49
Merged-chr5-25314134-1	chr5	25313634	25314634	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081383, exon 36 of 59)	exon (NM_001081383, exon 36 of 59)	67761.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	5.15	6.91	12.95	6.75	3.73	7.23	5.28	2.21	8.74
Merged-chr6-117584683-3	chr6	117584184	117585184	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	89449.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	18.31	29.03	11.1	45.88	61.11	29.74	69.71	48.64	38.1
Merged-chr2-27354956-3	chr2	27354394	27355394	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	72714.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	59.49	58.06	73.07	60.72	57.85	70.73	68.65	38.91	48.09
Merged-chr18-65512537-3	chr18	65512113	65513113	+	886.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	(TG)n|Simple_repeat|Simple_repeat	-67617.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	25.17	16.59	17.57	14.17	25.66	15.27	12.67	11.5	7.49
Merged-chr1-84149237-1	chr1	84148737	84149737	+	886.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	69724.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	8.01	4.15	11.1	15.52	10.73	23.31	9.51	7.52	9.99
Merged-chr6-108168146-1	chr6	108167646	108168646	+	886.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 3 of 8)	ORR1E|LTR|ERVL-MaLR	17437.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	9.72	19.81	26.82	13.49	12.6	16.08	63.37	55.27	33.72
Merged-chr7-41651738-3	chr7	41651224	41652224	+	885.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360680)	TTS (NM_001360680)	-16290.0	NR_004441	75835.0	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	5.15	16.13	21.27	6.75	4.2	17.68	5.28	2.65	6.87
Merged-chr13-58512188-3	chr13	58511685	58512685	+	885.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	98692.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	16.02	6.91	1.85	14.84	7.46	9.65	13.73	9.29	0.0
Merged-chr8-25543601-4	chr8	25543136	25544136	+	885.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	12447.0	NR_110510	102633315.0	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	-	predicted gene 16159	ncRNA	32.61	15.21	20.35	46.56	22.86	28.13	53.87	29.18	29.35
Merged-chr15-97422355-3	chr15	97421843	97422843	+	885.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175056.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	16.59	12.9	14.8	17.54	15.86	12.06	11.62	5.75	11.87
Merged-chr15-102204137-3	chr15	102203633	102204633	+	885.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289695)	promoter-TSS (NM_001289695)	133.0	NM_001358674	68744.0	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	68.65	49.3	77.7	87.71	40.59	62.7	83.44	23.88	39.35
Merged-chr15-12052397-2	chr15	12051886	12052886	+	885.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56379.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	17.73	17.51	7.4	20.92	11.2	7.23	5.28	3.1	5.0
Merged-chr7-84779316-3	chr7	84778821	84779821	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74250.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	14.87	22.12	12.95	16.19	17.73	17.68	7.39	7.07	1.87
Merged-chr7-45708334-3	chr7	45707827	45708827	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016974, exon 3 of 4)	exon (NM_016974, exon 3 of 4)	3080.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	187.06	129.94	81.4	149.79	132.02	90.02	178.5	221.53	84.94
Merged-chr10-37192235-5	chr10	37191739	37192739	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53313.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	71.51	57.6	49.02	71.52	39.65	76.36	43.3	52.18	32.48
Merged-chr11-33162403-3	chr11	33161901	33162901	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008722, intron 1 of 10)	intron (NM_008722, intron 1 of 10)	805.0	NM_001252261	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	50.91	55.75	35.15	87.04	104.03	87.61	55.98	49.52	33.1
Merged-chr7-84272479-3	chr7	84271985	84272985	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007488, intron 12 of 18)	intron (NM_007488, intron 12 of 18)	-120592.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	7.44	4.61	5.55	2.02	2.8	7.23	8.45	9.29	8.12
Merged-chr2-32631878-3	chr2	32631383	32632383	+	885.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198791, intron 5 of 6)	intron (NM_001198791, intron 5 of 6)	2383.0	NM_021515	11636.0	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	8.58	3.23	0.0	8.1	0.47	0.0	3.17	0.88	3.75
Merged-chr15-68134806-2	chr15	68134312	68135312	+	885.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152182, intron 9 of 13)	intron (NR_152182, intron 9 of 13)	124044.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	12.01	9.22	14.8	15.52	11.2	8.04	8.45	13.27	14.99
Merged-chr11-21453902-3	chr11	21453403	21454403	+	885.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57277.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	14.87	10.14	13.87	19.57	10.73	6.43	16.9	3.54	4.37
Merged-chrX-85710552-3	chrX	85710052	85711052	+	885.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 18 of 19)	intron (NM_212444, intron 18 of 19)	66267.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	4.0	2.76	1.85	11.47	2.33	4.82	10.56	7.52	15.61
Merged-chr4-148501075-1	chr4	148500575	148501575	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	-613.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	44.62	47.46	36.07	62.75	62.51	47.42	11.62	13.27	7.49
Merged-chr5-21045683-2	chr5	21045186	21046186	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	MTD|LTR|ERVL-MaLR	10225.0	NM_001356591	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	21.74	10.6	10.17	18.89	17.73	16.08	38.02	24.32	20.61
Merged-chr11-40135213-2	chr11	40134717	40135717	+	885.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	557465.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	1.72	5.07	0.92	8.1	4.2	10.45	8.45	2.21	3.75
Merged-chr7-19503678-2	chr7	19503180	19504180	+	885.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4651.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	14.87	8.75	1.85	7.42	7.0	6.43	9.51	5.75	7.49
Merged-chr18-9491212-3	chr18	9490731	9491731	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41077.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	61.78	39.17	8.32	128.87	96.1	22.51	88.72	73.84	6.25
Merged-chr14-79290810-3	chr14	79290315	79291315	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025427, intron 3 of 4)	intron (NM_025427, intron 3 of 4)	10820.0	NM_025427	66214.0	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	8.58	8.29	8.32	6.75	5.6	4.82	16.9	3.98	2.5
Merged-chr17-29513369-3	chr17	29512867	29513867	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22322.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	8.01	4.15	9.25	2.7	1.87	1.61	2.11	5.31	3.75
Merged-chr2-25498084-3	chr2	25497586	25498586	+	885.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027062)	TTS (NM_027062)	2420.0	NM_027062	69379.0	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	48.05	41.01	29.6	66.12	52.72	57.07	63.37	45.99	49.96
Merged-chr14-79533477-3	chr14	79532972	79533972	+	885.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	17798.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	156.74	191.23	163.72	143.04	106.83	95.65	134.14	190.13	117.41
Merged-chr1-34860413-1	chr1	34859913	34860913	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	MLTR14|LTR|ERV1	10424.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	24.6	23.04	27.75	27.66	28.92	38.58	38.02	34.93	28.1
Merged-chr9-123850243-3	chr9	123849761	123850761	+	885.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148925, intron 1 of 18)	intron (NM_148925, intron 1 of 18)	1400.0	NM_148925	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	95.53	98.15	87.87	85.69	69.04	87.61	79.21	99.49	38.1
Merged-chrX-12960020-1	chrX	12959520	12960520	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17853.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	3.43	2.76	3.7	8.1	8.86	14.47	1.06	3.1	3.75
Merged-chr13-37913340-1	chr13	37912840	37913840	+	885.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 6 of 9)	intron (NM_001039188, intron 6 of 9)	24469.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	13.73	11.06	5.55	7.42	3.73	8.04	5.28	2.65	6.25
Merged-chr2-48333114-3	chr2	48332605	48333605	+	885.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-481004.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.86	10.6	7.4	24.29	22.86	13.66	23.24	30.51	17.49
Merged-chr6-38982853-2	chr6	38982355	38983355	+	885.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	ORR1D2|LTR|ERVL-MaLR	63869.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	77.8	44.24	17.57	60.72	44.78	47.42	57.03	84.9	32.48
Merged-chr7-128226558-3	chr7	128226005	128227005	+	885.622192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10852.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	27.46	27.65	16.65	37.78	27.99	34.56	41.19	39.35	29.35
Merged-chr17-43579918-3	chr17	43579432	43580432	+	885.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	11481.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	59.49	73.73	27.75	108.63	44.32	57.07	59.15	51.73	35.6
Merged-chr2-166188201-3	chr2	166187717	166188717	+	885.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32534.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	15.45	4.61	12.95	20.92	8.86	12.06	7.39	14.15	12.49
Merged-chr13-99327580-3	chr13	99327047	99328047	+	885.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 7 of 9)	intron (NM_026873, intron 7 of 9)	17131.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	37.18	31.33	39.77	38.46	34.99	35.37	62.31	51.29	28.1
Merged-chr13-104110163-3	chr13	104109665	104110665	+	885.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029447)	promoter-TSS (NM_029447)	424.0	NM_144838	218544.0	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	28.6	23.5	24.97	26.31	20.99	38.58	30.63	30.07	25.61
Merged-chr15-66893394-3	chr15	66892896	66893896	+	885.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	2003.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	5.72	2.3	5.55	7.42	1.4	3.22	6.34	1.77	1.25
Merged-chr1-180890749-1	chr1	180890249	180891249	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	2.86	5.53	7.4	4.72	3.27	4.82	5.28	2.65	5.0
Merged-chr16-30870198-3	chr16	30869701	30870701	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	211231.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	17.16	12.44	12.95	24.29	8.4	12.86	10.56	10.17	13.74
Merged-chr13-117127535-2	chr13	117127036	117128036	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	19.45	8.29	2.77	2.7	3.73	0.8	15.84	7.96	5.62
Merged-chrX-94126159-3	chrX	94125659	94126659	+	885.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2392.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	35.47	40.55	12.95	39.81	15.86	28.94	20.07	31.84	18.11
Merged-chr15-35030502-1	chr15	35030002	35031002	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 7 of 11)	intron (NM_001357821, intron 7 of 11)	125304.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	4.58	7.37	5.55	7.42	10.26	1.61	3.17	5.75	8.12
Merged-chr2-46185422-1	chr2	46184922	46185922	+	885.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	488817.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.43	3.69	3.7	5.4	6.53	3.22	5.28	7.52	2.5
Merged-chr4-11475533-3	chr4	11475015	11476015	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10443.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	9.15	5.53	16.65	5.4	4.2	6.43	11.62	9.29	5.0
Merged-chr9-100507750-3	chr9	100507245	100508245	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324530)	promoter-TSS (NM_001324530)	-889.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	47.48	67.27	58.27	50.6	35.45	65.91	53.87	53.94	55.58
Merged-chr10-94304549-3	chr10	94304055	94305055	+	885.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5852.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	10.87	11.98	5.55	16.19	19.59	12.86	3.17	6.63	2.5
Merged-chr11-37077443-2	chr11	37076950	37077950	+	885.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133209.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	6.29	6.91	0.0	31.04	27.52	17.68	28.52	29.18	18.11
Merged-chr15-78915876-3	chr15	78915357	78916357	+	885.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020271, intron 1 of 1)	intron (NM_020271, intron 1 of 1)	1938.0	NM_020271	57028.0	Mm.263169	NM_020271	ENSMUSG00000116165	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	7.44	0.92	2.77	4.72	0.47	1.61	2.11	2.21	3.75
Merged-chr5-90685951-3	chr5	90685457	90686457	+	885.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45430.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	12.59	10.14	3.7	41.83	24.72	27.33	17.96	9.29	7.49
Merged-chr1-105891215-3	chr1	105890692	105891692	+	885.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99090.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	8.01	1.84	3.7	10.12	3.27	0.8	9.51	3.54	5.62
Merged-chr5-5514917-2	chr5	5514425	5515425	+	885.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022890)	promoter-TSS (NM_022890)	51.0	NM_022890	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	9.72	1.38	1.85	3.37	6.53	4.02	6.34	0.0	3.75
Merged-chr17-55932056-3	chr17	55931559	55932559	+	885.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13200.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	41.19	35.48	20.35	63.42	51.78	28.94	68.65	107.0	34.97
Merged-chr13-28844185-3	chr13	28843689	28844689	+	885.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	41233.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	18.88	7.83	7.4	30.36	17.73	25.72	13.73	3.1	4.37
Merged-chr10-85587956-1	chr10	85587456	85588456	+	885.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 3 of 16)	intron (NM_028709, intron 3 of 16)	-10455.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.14	0.92	5.55	0.0	5.13	0.8	4.22	4.42	3.75
Merged-chr7-31132238-3	chr7	31131745	31132745	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153431, intron 18 of 18)	intron (NR_153431, intron 18 of 18)	-5222.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	24.6	25.34	49.95	57.35	42.92	57.07	21.12	16.8	5.62
Merged-chr13-89505043-3	chr13	89504525	89505525	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35611.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	7.44	9.68	9.25	4.72	4.2	6.43	6.34	11.05	12.49
Merged-chr10-120979991-3	chr10	120979501	120980501	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081193)	promoter-TSS (NM_001081193)	-671.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	237.97	189.38	73.07	284.06	269.64	133.43	147.87	136.63	49.96
Merged-chr13-23571816-3	chr13	23571329	23572329	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178187)	promoter-TSS (NM_178187)	429.0	NM_178196	319181.0	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	137.29	152.98	90.65	124.15	110.1	140.66	119.35	164.04	131.15
Merged-chr11-59449955-3	chr11	59449432	59450432	+	885.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037992)	promoter-TSS (NR_037992)	102.0	NM_001356454	67826.0	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	22.31	16.59	10.17	25.64	20.06	24.92	11.62	18.13	19.98
Merged-chr10-75932398-3	chr10	75931904	75932904	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175329)	promoter-TSS (NM_175329)	98.0	NM_001306184	17385.0	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	5.72	0.92	1.85	2.7	0.93	3.22	4.22	0.0	5.0
Merged-chr4-105109836-3	chr4	105109326	105110326	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178143)	promoter-TSS (NM_178143)	72.0	NM_178143	108079.0	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	10.87	0.92	6.47	8.1	3.27	3.22	2.11	0.0	2.5
Merged-chr2-160365676-3	chr2	160365183	160366183	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	1382.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	90.96	88.47	79.55	105.26	97.5	110.12	106.67	109.66	74.32
Merged-chr13-44732734-3	chr13	44732238	44733238	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	1467.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	120.13	158.97	84.17	124.15	93.77	86.01	158.43	168.47	69.32
Merged-chr16-89718706-3	chr16	89718204	89719204	+	885.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99648.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.57	1.84	10.17	4.05	4.67	3.22	4.22	3.1	6.25
Merged-chr7-24661337-3	chr7	24660837	24661837	+	885.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030681)	promoter-TSS (NR_030681)	43.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	30.89	25.8	30.52	39.13	16.33	33.76	30.63	24.76	23.73
Merged-chr2-165487028-3	chr2	165486528	165487528	+	885.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6286.0	NM_001007581	381406.0	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	5.72	4.61	9.25	3.37	2.33	4.82	5.28	3.54	3.75
Merged-chr18-45881734-1	chr18	45881234	45882234	+	885.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040342, intron 2 of 3)	intron (NR_040342, intron 2 of 3)	163526.0	NR_040342	107003.0	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	4.0	3.23	0.0	8.1	6.06	12.86	2.11	4.42	7.49
Merged-chr4-86648623-1	chr4	86648123	86649123	+	885.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21436.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	9.15	1.38	0.0	6.07	3.27	7.23	2.11	6.19	7.49
Merged-chr2-103488974-3	chr2	103488491	103489491	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3838.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	10.3	11.06	9.25	8.1	11.2	16.08	27.46	20.78	14.36
Merged-chr1-151583690-3	chr1	151583210	151584210	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	12337.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	33.18	31.33	9.25	77.59	57.85	56.27	66.54	72.52	59.33
Merged-chr3-95687945-3	chr3	95687459	95688459	+	885.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	-42.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	13.73	11.06	20.35	13.49	13.06	8.04	14.79	6.63	3.75
Merged-chr16-38679648-4	chr16	38679161	38680161	+	885.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	33374.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	55.49	66.35	60.12	58.03	60.65	66.71	85.55	111.43	71.82
Merged-chr7-144981885-3	chr7	144981389	144982389	+	885.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41964.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.29	0.46	0.0	10.12	1.87	10.45	8.45	2.65	1.25
Merged-chr1-152677261-3	chr1	152676749	152677749	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-52032.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	45.76	46.08	33.3	59.38	44.78	55.46	47.53	45.99	32.48
Merged-chr12-79070204-1	chr12	79069704	79070704	+	885.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181073, intron 18 of 28)	intron (NM_181073, intron 18 of 28)	19466.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	2.86	4.15	1.85	10.8	2.33	3.22	2.11	2.21	0.62
Merged-chr5-77246310-3	chr5	77245811	77246811	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19183.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	42.9	26.26	5.55	40.48	21.46	22.51	46.47	53.5	22.48
Merged-chr6-3355073-1	chr6	3354573	3355573	+	885.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	44498.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.14	0.0	5.55	5.4	1.4	1.61	5.28	10.17	6.25
Merged-chrX-17571740-3	chrX	17571237	17572237	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313745, intron 1 of 3)	intron (NM_001313745, intron 1 of 3)	270.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	159.03	226.71	122.09	158.56	155.35	134.23	162.65	169.35	112.42
Merged-chr5-113649916-3	chr5	113649431	113650431	+	885.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	459.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	282.59	278.31	224.76	316.44	388.6	274.09	358.05	355.94	129.28
Merged-chr5-117904159-2	chr5	117903651	117904651	+	885.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 8 of 27)	intron (NM_008712, intron 8 of 27)	37312.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.0	2.3	7.4	6.07	2.33	7.23	11.62	4.86	3.75
Merged-chr8-125489009-2	chr8	125488504	125489504	+	885.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3829.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.02	25.8	24.97	22.27	21.93	28.94	16.9	11.05	13.12
Merged-chr11-120358073-2	chr11	120357570	120358570	+	885.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3464.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	4.0	3.69	9.25	11.47	7.93	12.06	7.39	1.77	6.87
Merged-chr4-152448811-3	chr4	152448318	152449318	+	885.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252655)	promoter-TSS (NM_001252655)	37.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	24.03	24.42	22.2	26.31	41.05	51.44	22.18	13.71	14.99
Merged-chr3-115815682-3	chr3	115815186	115816186	+	885.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72373.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	57.78	47.46	11.1	127.52	143.22	94.04	50.7	57.92	11.87
Merged-chr16-4878532-4	chr16	4878069	4879069	+	885.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1282.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	131.0	135.93	127.64	91.76	115.23	133.43	182.72	198.09	110.54
Merged-chr12-82276027-3	chr12	82275525	82276525	+	885.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-35324.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	20.59	19.35	12.95	22.27	24.26	59.48	26.4	14.59	18.11
Merged-chr6-87923841-3	chr6	87923346	87924346	+	885.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173737, intron 4 of 6)	intron (NM_173737, intron 4 of 6)	9870.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	14.87	13.36	5.55	14.84	14.93	11.25	11.62	13.27	10.62
Merged-chr6-87993005-3	chr6	87992511	87993511	+	885.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11328.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	5.15	4.61	7.4	3.37	2.8	8.04	1.06	3.54	2.5
Merged-chrX-95968808-3	chrX	95968305	95969305	+	885.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11831.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	2.86	0.92	1.85	4.72	1.87	0.0	1.06	1.77	1.25
Merged-chr13-12340764-2	chr13	12340266	12341266	+	885.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033268)	promoter-TSS (NM_033268)	-34.0	NM_033268	11472.0	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	1.72	1.84	3.7	3.37	0.93	0.0	1.06	0.88	2.5
Merged-chr12-33110949-3	chr12	33110441	33111441	+	885.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015602)	TTS (NR_015602)	-18066.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	16.02	11.98	12.95	19.57	24.72	36.17	13.73	12.38	9.37
Merged-chr12-69214533-3	chr12	69214029	69215029	+	885.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011133, intron 6 of 18)	intron (NM_011133, intron 6 of 18)	13661.0	NM_011133	18974.0	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	17.16	7.83	14.8	6.75	5.13	8.04	22.18	15.48	14.99
Merged-chr7-126755044-3	chr7	126754539	126755539	+	885.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4587.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	24.03	11.06	11.1	30.36	14.46	24.11	12.67	12.82	12.49
Merged-chr17-42892161-1	chr17	42891661	42892661	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-15737.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	14.79	12.82	8.12
Merged-chr5-137883541-1	chr5	137883041	137884041	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11783.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	42.9	42.85	40.7	56.0	44.32	46.62	52.81	57.48	56.83
Merged-chr4-88351120-2	chr4	88350588	88351588	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 28 of 43)	intron (NM_001081184, intron 28 of 43)	87838.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.14	2.76	1.85	5.4	4.2	3.22	2.11	2.65	2.5
Merged-chr1-170535447-1	chr1	170534947	170535947	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	21663.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.14	2.76	5.55	4.72	4.67	6.43	2.11	0.88	1.87
Merged-chr3-119779432-3	chr3	119778917	119779917	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	L1ME2z|LINE|L1	3971.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	28.03	42.85	54.57	37.11	32.19	46.62	48.58	31.84	24.98
Merged-chr14-34489345-1	chr14	34488845	34489845	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	L2|LINE|L2	13201.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	27.46	32.72	18.5	23.62	21.93	16.08	40.14	48.64	14.36
Merged-chr8-35592012-1	chr8	35591512	35592512	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-2992.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	5.15	7.37	5.55	8.1	5.13	7.23	11.62	5.31	7.49
Merged-chr2-132151799-3	chr2	132151295	132152295	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6475.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	3.43	5.99	5.55	7.42	2.8	0.8	8.45	6.63	10.62
Merged-chr19-41386188-2	chr19	41385650	41386650	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1080.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	78.94	65.43	44.4	85.69	55.98	72.34	69.71	83.13	29.98
Merged-chr8-80314088-3	chr8	80313608	80314608	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179937.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	25.17	23.04	43.47	29.69	23.33	39.39	20.07	21.22	12.49
Merged-chr2-18609552-1	chr2	18609052	18610052	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-62910.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	12.59	3.69	3.7	4.72	5.6	0.0	7.39	5.75	7.49
Merged-chr7-128138557-1	chr7	128138057	128139057	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 14 of 29)	MTEa|LTR|ERVL-MaLR	8989.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	12.01	4.15	3.7	5.4	6.53	4.02	7.39	7.07	5.62
Merged-chr10-68715599-2	chr10	68715110	68716110	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8136.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	6.86	9.68	3.7	13.49	11.2	8.04	21.12	15.92	11.24
Merged-chr7-78913192-1	chr7	78912692	78913692	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291220)	promoter-TSS (NM_001291220)	-232.0	NM_001291221	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	107.55	101.83	42.55	91.09	105.43	67.52	76.05	61.02	43.09
Merged-chr6-94274126-1	chr6	94273626	94274626	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	9791.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	5.15	1.84	3.7	6.07	5.13	8.04	1.06	0.88	6.25
Merged-chr5-99455773-1	chr5	99455273	99456273	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	MTC|LTR|ERVL-MaLR	-202846.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	7.44	4.15	11.1	3.37	2.8	1.61	3.17	3.54	6.87
Merged-chr13-8641576-1	chr13	8641076	8642076	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	229468.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.0	1.84	3.7	4.72	10.26	11.25	10.56	8.4	9.99
Merged-chr13-80968719-1	chr13	80968219	80969219	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	RLTR16|LTR|ERVK	4645.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.86	5.07	0.0	6.07	3.27	3.22	2.11	3.54	9.99
Merged-chr6-50384560-3	chr6	50384063	50385063	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	ORR1E|LTR|ERVL-MaLR	-1726.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	14.87	11.52	11.1	3.37	6.06	4.82	6.34	6.19	6.25
Merged-chr6-72023798-1	chr6	72023298	72024298	+	885.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	18730.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	5.72	10.6	19.42	8.1	4.2	2.41	9.51	7.96	5.0
Merged-chr11-6497838-2	chr11	6497332	6498332	+	885.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21756.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	102.4	112.43	81.4	4.72	0.93	0.0	11.62	22.11	16.24
Merged-chr2-10972193-1	chr2	10971693	10972693	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-200189.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.0	4.15	0.92	2.02	5.6	8.84	2.11	3.54	9.99
Merged-chr5-64267487-1	chr5	64266987	64267987	+	885.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37130.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.58	4.15	7.4	18.89	12.13	20.09	25.35	30.51	12.49
Merged-chr11-84597146-4	chr11	84596664	84597664	+	884.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71504.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	89.81	74.19	88.8	60.05	31.72	65.91	62.31	73.84	60.58
Merged-chr4-106529942-3	chr4	106529441	106530441	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31097.0	NM_053272	74754.0	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	4.0	2.76	3.7	8.77	1.4	4.82	1.06	2.21	0.62
Merged-chr19-7268903-3	chr19	7268356	7269356	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_054048, exon 2 of 13)	5' UTR (NM_054048, exon 2 of 13)	577.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	9.72	3.69	2.77	5.4	1.87	11.25	5.28	2.65	2.5
Merged-chr13-89488392-3	chr13	89487884	89488884	+	884.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52252.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	9.15	8.29	9.25	4.72	6.06	9.65	17.96	14.15	11.24
Merged-chr14-75841923-3	chr14	75841436	75842436	+	884.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045294)	TTS (NR_045294)	3028.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	8.58	8.75	3.7	15.52	8.86	11.25	10.56	2.65	9.37
Merged-chr13-93300792-3	chr13	93300315	93301315	+	884.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2942.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	55.49	83.86	41.62	53.3	39.65	49.83	51.75	69.86	53.08
Merged-chr7-35554923-3	chr7	35554445	35555445	+	884.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033080, intron 1 of 2)	intron (NM_033080, intron 1 of 2)	983.0	NM_033080	110959.0	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	103.54	99.99	105.44	124.15	106.36	114.94	106.67	124.69	74.32
Merged-chr17-34557147-3	chr17	34556663	34557663	+	884.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7132.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	33.18	15.67	16.65	56.0	45.72	32.15	41.19	29.63	18.11
Merged-chr4-130804029-3	chr4	130803520	130804520	+	884.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	11483.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	96.68	105.52	91.57	107.28	80.24	102.08	199.62	174.66	91.18
Merged-chr5-142551138-3	chr5	142550637	142551637	+	884.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289588)	promoter-TSS (NM_001289588)	-39.0	NM_001289588	231858.0	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	1.72	2.76	8.32	2.7	3.27	4.82	5.28	3.98	1.25
Merged-chr6-51858041-3	chr6	51857548	51858548	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154501.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	11.44	5.07	1.85	4.05	2.8	1.61	0.0	2.21	1.25
Merged-chr19-46869684-3	chr19	46869188	46870188	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102471, intron 5 of 6)	intron (NM_001102471, intron 5 of 6)	92663.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	10.3	3.69	0.92	6.75	2.33	3.22	2.11	3.54	3.12
Merged-chr2-71744986-3	chr2	71744483	71745483	+	884.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	25566.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	1.72	3.69	7.4	4.72	5.6	4.82	8.45	7.96	9.99
Merged-chr13-48870182-3	chr13	48869655	48870655	+	884.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	CpG	730.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	84.66	77.87	59.2	75.57	63.45	55.46	76.05	34.49	36.22
Merged-chr14-51140553-1	chr14	51140053	51141053	+	884.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6214.0	NM_011271	19752.0	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	7.44	4.15	3.7	3.37	3.27	5.63	2.11	4.42	4.37
Merged-chr9-62812943-3	chr9	62812439	62813439	+	884.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1291.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	104.69	88.47	50.87	181.5	141.35	97.26	116.18	103.02	48.71
Merged-chr11-97310199-3	chr11	97309719	97310719	+	884.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5497.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	50.91	26.73	20.35	129.55	112.43	115.75	28.52	24.76	6.25
Merged-chr8-108182970-3	chr8	108182467	108183467	+	884.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	401710.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	16.59	9.68	12.95	2.7	9.33	3.22	7.39	8.4	15.61
Merged-chr4-107347634-3	chr4	107347070	107348070	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205156, intron 7 of 8)	intron (NM_001205156, intron 7 of 8)	-20214.0	NM_028355	72787.0	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	34.9	28.11	46.25	31.04	17.73	29.74	29.57	36.7	34.97
Merged-chr1-132477053-3	chr1	132476560	132477560	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172517)	promoter-TSS (NM_172517)	-307.0	NM_001357486	213464.0	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	118.42	138.24	70.3	110.65	123.16	101.28	138.36	161.39	78.07
Merged-chr5-30867090-1	chr5	30866590	30867590	+	884.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310516)	TTS (NM_001310516)	-2489.0	NM_144525	68796.0	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	10.87	8.75	5.55	8.77	5.13	17.68	8.45	5.75	6.25
Merged-chr12-80235481-2	chr12	80234969	80235969	+	884.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	24902.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	17.73	10.14	25.9	18.89	12.6	12.86	13.73	11.5	10.62
Merged-chr12-91581901-3	chr12	91581399	91582399	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 2 of 8)	intron (NM_175335, intron 2 of 8)	7750.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	60.07	68.66	52.72	56.68	62.98	57.87	85.55	84.9	46.22
Merged-chr6-8686898-3	chr6	8686388	8687388	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	71570.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	33.75	41.93	36.07	58.03	43.85	62.7	57.03	67.21	34.97
Merged-chr4-63385959-3	chr4	63385457	63386457	+	884.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12283.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	32.61	30.87	41.62	29.69	40.59	56.27	58.09	37.14	34.97
Merged-chr11-109434479-1	chr11	109433979	109434979	+	884.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252193, intron 6 of 7)	intron (NM_001252193, intron 6 of 7)	-5599.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	1.14	1.84	1.85	3.37	5.6	9.65	7.39	7.07	3.75
Merged-chr3-20255323-1	chr3	20254823	20255823	+	884.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029706, intron 9 of 10)	MER20|DNA|hAT-Charlie	-13142.0	NM_007753	12873.0	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	1.14	1.84	3.7	0.67	0.93	0.0	0.0	2.65	0.0
Merged-chr6-120156036-3	chr6	120155527	120156527	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-37796.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	120.13	104.14	74.92	141.69	107.76	88.42	110.9	109.66	93.05
Merged-chr1-170644460-3	chr1	170643953	170644953	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177068)	promoter-TSS (NM_177068)	-79.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	1.72	2.3	1.85	18.22	14.46	22.51	12.67	15.03	6.87
Merged-chr6-32319240-1	chr6	32318740	32319740	+	884.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	MTC|LTR|ERVL-MaLR	-191901.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	12.01	7.83	0.0	6.75	2.8	4.82	6.34	1.33	8.12
Merged-chr19-56548098-3	chr19	56547596	56548596	+	884.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	26.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	155.6	146.53	86.02	182.85	174.01	142.27	158.43	193.67	71.82
Merged-chr12-73046757-3	chr12	73046257	73047257	+	884.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009189)	promoter-TSS (NM_009189)	-45.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.57	1.38	4.62	8.77	0.93	4.82	2.11	0.0	1.25
Merged-chr11-69803969-3	chr11	69803487	69804487	+	884.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027913, exon 1 of 1)	non-coding (NR_027913, exon 1 of 1)	318.0	NR_027913	74341.0	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	9.72	9.68	14.8	11.47	6.53	14.47	9.51	3.54	9.99
Merged-chr6-148914098-3	chr6	148913581	148914581	+	884.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17844.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	4.58	5.07	7.4	6.07	4.67	3.22	3.17	0.88	6.25
Merged-chr5-43870889-3	chr5	43870395	43871395	+	884.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	2086.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	129.28	148.37	131.34	80.29	70.44	122.18	183.78	168.02	104.92
Merged-chr4-95849806-3	chr4	95849311	95850311	+	884.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	117224.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	37.18	37.32	22.2	24.96	15.86	40.99	40.14	33.6	14.99
Merged-chr2-145168197-3	chr2	145167702	145168702	+	884.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356497, intron 1 of 16)	CpG	427.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	2.29	1.84	1.85	2.7	1.87	0.0	0.0	3.1	7.49
Merged-chr11-68899234-3	chr11	68898738	68899738	+	884.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2328.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	16.02	7.37	13.87	31.04	21.93	16.08	26.4	15.48	6.25
Merged-chr7-82869960-1	chr7	82869460	82870460	+	884.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	2627.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.86	0.0	4.62	3.37	2.8	0.0	3.17	0.88	4.37
Merged-chr13-81230323-3	chr13	81229820	81230820	+	884.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	266246.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	18.31	27.19	32.37	39.13	24.26	42.6	30.63	32.28	31.85
Merged-chr11-55077453-3	chr11	55076952	55077952	+	884.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	679.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	32.61	21.66	48.1	28.34	34.52	30.54	32.74	21.67	36.85
Merged-chr19-17339761-2	chr19	17339257	17340257	+	884.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136484)	promoter-TSS (NM_001136484)	-252.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	9.15	7.83	3.7	18.22	7.93	14.47	7.39	3.1	7.49
Merged-chr10-10396277-3	chr10	10395778	10396778	+	884.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 21 of 36)	intron (NM_001127353, intron 21 of 36)	76036.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	34.32	46.08	41.62	29.01	31.26	23.31	43.3	45.99	41.84
Merged-chr6-70871689-3	chr6	70871197	70872197	+	884.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	27182.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	140.15	151.14	85.1	110.65	125.96	91.63	82.38	94.18	45.59
Merged-chr16-4558080-3	chr16	4557584	4558584	+	884.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	intron (NM_031182, intron 1 of 6)	1636.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	40.62	36.4	24.97	39.81	42.45	36.17	36.97	51.73	28.1
Merged-chr1-75316943-3	chr1	75316435	75317435	+	884.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016878)	promoter-TSS (NM_016878)	82.0	NM_016878	13437.0	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	54.35	80.18	69.37	68.15	84.44	88.42	92.94	83.57	59.95
Merged-chr16-50251554-2	chr16	50251064	50252064	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 7 of 16)	ORR1E|LTR|ERVL-MaLR	-178712.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	4.58	3.23	3.7	2.7	7.93	8.04	2.11	1.33	9.99
Merged-chr3-152122886-1	chr3	152122386	152123386	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	ORR1C1|LTR|ERVL-MaLR	43014.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	9.15	3.69	3.7	12.14	7.93	7.23	3.17	0.44	1.25
Merged-chr1-93124237-1	chr1	93123737	93124737	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11003.0	NM_001276710	11611.0	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	13.73	11.52	7.4	6.07	9.8	8.04	14.79	5.75	8.12
Merged-chr18-79978329-2	chr18	79977835	79978835	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68560.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	27.46	31.33	31.45	37.11	33.59	22.51	4.22	4.42	1.25
Merged-chr11-12050700-1	chr11	12050200	12051200	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13280.0	NM_010345	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	6.86	2.3	1.85	6.07	3.73	3.22	4.22	1.33	5.62
Merged-chr2-117092058-2	chr2	117091557	117092557	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29014.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	21.17	15.67	30.52	10.12	8.4	22.51	11.62	16.36	14.36
Merged-chr5-20943749-4	chr5	20943225	20944225	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-7264.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	81.23	68.66	72.15	60.05	50.85	81.99	67.6	73.4	41.22
Merged-chr17-12250147-4	chr17	12249725	12250725	+	884.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357722, intron 11 of 25)	RLTR44A|LTR|ERVK	68435.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	13.73	16.13	9.25	139.67	167.01	97.26	140.47	199.86	63.7
Merged-chr10-127628742-1	chr10	127628242	127629242	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7594.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	13.16	17.51	12.02	31.71	20.53	18.49	16.9	16.36	12.49
Merged-chr15-53386892-2	chr15	53386399	53387399	+	884.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40716.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.86	9.68	3.7	12.14	12.13	14.47	6.34	11.94	3.75
Merged-chr1-173630795-3	chr1	173630293	173631293	+	884.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175026)	promoter-TSS (NM_175026)	-66.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	46.34	29.49	20.35	35.76	21.93	19.29	53.87	51.29	38.1
Merged-chr17-42910611-3	chr17	42910123	42911123	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-34199.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	18.31	18.89	12.95	16.19	16.79	27.33	125.69	93.3	71.2
Merged-chrX-38180187-3	chrX	38179642	38180642	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-9651.0	NM_020256	56805.0	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	3.43	4.15	3.7	4.05	4.67	1.61	3.17	1.33	3.75
Merged-chr18-50016894-3	chr18	50016340	50017340	+	884.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-14144.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	66.93	66.35	54.57	53.3	46.65	57.07	53.87	41.12	33.1
Merged-chr18-53177332-3	chr18	53176838	53177838	+	884.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	1046.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	177.34	247.9	175.74	172.73	226.26	151.11	251.37	327.65	154.88
Merged-chr5-123252054-2	chr5	123251551	123252551	+	884.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23861.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	6.29	5.07	0.0	6.75	8.86	10.45	7.39	1.77	6.87
Merged-chr15-58472551-3	chr15	58472043	58473043	+	884.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57075.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.29	3.23	1.85	5.4	3.27	1.61	4.22	6.19	1.25
Merged-chr11-90231793-3	chr11	90231296	90232296	+	884.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	-17680.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	27.46	24.88	21.27	37.11	33.12	45.01	27.46	18.57	20.61
Merged-chr5-140388084-3	chr5	140387584	140388584	+	884.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	1224.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	68.65	57.14	60.12	56.0	44.78	58.68	73.93	61.02	20.61
Merged-chr2-34779647-5	chr2	34779152	34780152	+	884.386658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 7 of 7)	B1F2|SINE|Alu	7562.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	23.45	10.14	11.1	8.1	6.06	2.41	8.45	4.42	0.0
Merged-chr17-70680046-2	chr17	70679548	70680548	+	884.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	118301.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	10.3	9.22	1.85	4.72	4.2	3.22	0.0	1.77	2.5
Merged-chr14-25473695-2	chr14	25473210	25474210	+	884.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	14525.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	335.22	281.54	246.04	331.96	245.85	213.0	273.55	351.97	135.52
Merged-chr3-32715329-2	chr3	32714828	32715828	+	884.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019673, intron 4 of 13)	intron (NM_019673, intron 4 of 13)	6782.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	21.17	37.32	35.15	10.8	17.26	27.33	30.63	32.28	24.36
Merged-chr4-36285427-1	chr4	36284927	36285927	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165999, intron 3 of 7)	intron (NM_001165999, intron 3 of 7)	360026.0	NR_030545	100124458.0		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	7.44	2.76	9.25	2.02	3.27	6.43	11.62	7.07	6.25
Merged-chr12-84201429-3	chr12	84200932	84201932	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	-7417.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	10.3	6.45	18.5	5.4	3.27	8.04	7.39	6.63	2.5
Merged-chr6-124279115-1	chr6	124278615	124279615	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25536.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	57.21	99.99	61.97	107.95	89.1	92.44	63.37	88.88	51.21
Merged-chr7-45660992-3	chr7	45660499	45661499	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271993, intron 1 of 2)	intron (NM_001271993, intron 1 of 2)	5395.0	NM_018876	14344.0	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	8.58	2.76	0.0	2.7	4.2	4.82	6.34	1.33	3.75
Merged-chr9-89874689-1	chr9	89874189	89875189	+	884.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35086.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	1.72	1.84	3.7	2.02	0.93	3.22	1.06	3.1	2.5
Merged-chr16-21205240-1	chr16	21204740	21205740	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010143, exon 1 of 16)	exon (NM_010143, exon 1 of 16)	445.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	24.03	13.82	8.32	16.87	9.33	9.65	17.96	11.94	8.74
Merged-chr10-94525154-3	chr10	94524636	94525636	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	10279.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	41.76	30.87	27.75	32.39	23.79	18.49	38.02	39.8	11.87
Merged-chr3-108444188-3	chr3	108443693	108444693	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	1066.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	141.3	162.2	63.82	136.97	183.34	86.01	128.85	182.62	42.47
Merged-chr13-44407572-1	chr13	44407072	44408072	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie4a|DNA|hAT-Charlie	-32155.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	10.3	13.82	19.42	12.82	9.8	6.43	20.07	17.24	23.73
Merged-chr12-3350572-3	chr12	3350074	3351074	+	884.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14558.0	NM_008445	16570.0	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	52.06	65.43	53.65	60.72	61.58	56.27	69.71	96.39	56.83
Merged-chr4-141762797-1	chr4	141762297	141763297	+	884.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	16122.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	16.02	6.91	12.02	31.04	23.33	31.35	2.11	7.52	9.99
Merged-chr2-36231163-3	chr2	36230666	36231666	+	884.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	740.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	108.12	95.38	90.65	105.26	114.29	92.44	162.65	136.19	44.97
Merged-chr18-38943443-2	chr18	38942955	38943955	+	884.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-24756.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	10.87	11.06	5.55	8.1	12.6	14.47	3.17	2.21	0.0
Merged-chr1-134416736-4	chr1	134416152	134417152	+	884.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	988.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	125.28	173.72	78.62	119.43	119.89	131.82	113.01	135.3	87.43
Merged-chr16-38760888-3	chr16	38760372	38761372	+	884.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152434, intron 4 of 6)	intron (NR_152434, intron 4 of 6)	18613.0	NM_001285793	56375.0	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	69.22	73.26	47.17	47.23	48.05	40.99	117.24	95.95	58.71
Merged-chr1-7100747-3	chr1	7100246	7101246	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	11826.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	26.89	33.64	21.27	20.24	16.33	12.86	33.8	19.01	18.74
Merged-chr2-20992758-3	chr2	20992254	20993254	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	23880.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	24.6	20.27	15.72	22.27	34.99	20.9	12.67	15.48	13.12
Merged-chr11-54619093-3	chr11	54618590	54619590	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 7 of 28)	intron (NM_001252494, intron 7 of 28)	22944.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	22.31	42.85	31.45	27.66	28.46	38.58	31.69	32.28	29.35
Merged-chr13-17836914-3	chr13	17836395	17837395	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31798.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	8.58	7.83	3.7	8.1	5.13	4.02	9.51	3.98	9.99
Merged-chr16-24165760-3	chr16	24165260	24166260	+	884.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83070.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	9.72	5.53	1.85	8.77	6.53	4.82	5.28	3.1	0.62
Merged-chr14-74689785-1	chr14	74689285	74690285	+	884.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	-42512.0	NM_001285423	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.86	5.07	0.0	3.37	5.13	3.22	6.34	2.65	5.62
Merged-chr9-96416596-2	chr9	96416099	96417099	+	884.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52168.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	5.15	3.69	5.55	8.1	5.6	6.43	9.51	12.38	6.87
Merged-chr19-8715000-3	chr19	8714488	8715488	+	884.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161413, intron 1 of 9)	intron (NM_001161413, intron 1 of 9)	-1091.0	NM_008577	17254.0	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	35.47	50.23	22.2	28.34	32.66	57.07	32.74	26.97	40.59
Merged-chr10-118599826-3	chr10	118599331	118600331	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-43306.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	96.68	103.68	66.6	79.62	108.23	70.73	108.79	122.04	49.96
Merged-chr5-62762907-1	chr5	62762407	62763407	+	884.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3270.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	110.41	129.02	85.1	147.76	104.03	85.2	113.01	153.43	66.82
Merged-chr15-99065847-3	chr15	99065361	99066361	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	8808.0	NR_155351	102637490.0	Mm.421289	NR_155351	ENSMUSG00000116371	Gm34284	-	predicted gene, 34284	ncRNA	4.0	3.69	0.0	4.72	3.73	5.63	1.06	1.77	1.87
Merged-chr3-88460204-3	chr3	88459703	88460703	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163489, intron 1 of 14)	intron (NM_001163489, intron 1 of 14)	979.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	33.75	32.72	20.35	38.46	23.33	35.37	29.57	31.39	13.74
Merged-chr2-33047053-3	chr2	33046560	33047560	+	884.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355201, intron 6 of 29)	ORR1F|LTR|ERVL-MaLR	39397.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	19.45	10.6	9.25	12.82	13.53	1.61	13.73	15.92	9.99
Merged-chr15-100125565-2	chr15	100125084	100126084	+	884.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-28812.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	40.04	29.95	24.97	39.13	17.26	23.31	22.18	15.92	11.87
Merged-chr6-39377645-3	chr6	39377120	39378120	+	884.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028123)	promoter-TSS (NM_028123)	87.0	NM_001361619	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	51.48	59.9	50.87	66.8	53.65	51.44	80.27	44.66	23.11
Merged-chr10-81303515-3	chr10	81303007	81304007	+	884.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10544.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	23.45	21.2	26.82	35.09	23.33	16.08	13.73	7.07	8.74
Merged-chr19-43670760-3	chr19	43670241	43671241	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	4140.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	12.01	16.59	15.72	14.84	19.59	24.92	29.57	45.54	46.22
Merged-chr1-171607355-3	chr1	171606855	171607855	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102726)	promoter-TSS (NR_102726)	-21.0	NR_102726	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	49.2	43.77	26.82	44.53	35.92	37.78	71.82	54.83	29.35
Merged-chr18-60210786-3	chr18	60210294	60211294	+	884.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1283.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	70.36	63.59	87.87	53.98	35.45	63.5	95.06	82.24	58.71
Merged-chr12-86079072-2	chr12	86078559	86079559	+	884.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009368)	promoter-TSS (NM_009368)	-18.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	108.69	95.84	67.52	118.75	149.28	98.87	102.45	123.36	53.71
Merged-chr4-21755256-3	chr4	21754746	21755746	+	884.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290420, intron 11 of 11)	intron (NM_001290420, intron 11 of 11)	11965.0	NM_029840	77032.0	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	5.15	5.53	3.7	8.1	4.67	22.51	17.96	9.73	12.49
Merged-chr19-11343303-3	chr19	11342822	11343822	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-7176.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	24.6	26.26	23.12	19.57	14.0	30.54	19.01	20.34	18.11
Merged-chr11-40694988-3	chr11	40694466	40695466	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001199274, exon 1 of 7)	5' UTR (NM_001199274, exon 1 of 7)	237.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	82.95	127.64	98.05	98.51	150.68	118.96	132.02	177.75	106.17
Merged-chr2-48768012-3	chr2	48767484	48768484	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-46125.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	17.16	9.22	2.77	12.82	7.46	11.25	17.96	11.94	19.98
Merged-chr19-7583354-3	chr19	7582860	7583860	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23833.0	NM_001356574	56072.0	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	Grip1|gal-12	lectin, galactose binding, soluble 12	protein-coding	12.01	13.82	14.8	17.54	12.13	41.8	10.56	11.5	24.36
Merged-chr19-34553640-3	chr19	34553096	34554096	+	884.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	MLT2F|LTR|ERVL	2508.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	100.11	102.29	107.29	105.93	87.7	88.42	143.64	244.08	98.68
Merged-chr15-59016584-5	chr15	59016072	59017072	+	884.0457150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	T-rich|Low_complexity|Low_complexity	65454.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	60.07	32.72	17.57	70.17	42.45	23.31	54.92	45.54	24.98
Merged-chr14-70111092-4	chr14	70110606	70111606	+	884.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	11013.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	39.47	45.62	24.97	40.48	36.85	40.19	111.96	107.45	59.95
Merged-chr16-26626366-1	chr16	26625866	26626866	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152416, intron 2 of 12)	intron (NR_152416, intron 2 of 12)	44661.0	NM_008364	16180.0	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	2.86	2.76	7.4	1.35	4.2	11.25	11.62	3.54	3.75
Merged-chr11-115413794-1	chr11	115413294	115414294	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	tRNA-Arg-CGG|tRNA|tRNA	6125.0	NM_027862	71679.0	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	371.83	304.58	149.84	335.33	263.58	193.71	247.15	347.99	110.54
Merged-chr11-86840688-1	chr11	86840188	86841188	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33028.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	14.87	2.76	3.7	20.92	9.33	8.04	14.79	9.29	13.74
Merged-chr2-30979989-3	chr2	30979493	30980493	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144885, intron 3 of 8)	intron (NM_144885, intron 3 of 8)	1948.0	NM_144885	227707.0	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	21.74	19.35	18.5	15.52	3.73	17.68	15.84	26.97	12.49
Merged-chr18-60810545-1	chr18	60810045	60811045	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010545, intron 6 of 7)	intron (NM_010545, intron 6 of 7)	-1531.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	22.31	11.52	42.55	4.05	2.33	14.47	11.62	10.17	14.36
Merged-chr16-31700417-3	chr16	31699915	31700915	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357281, intron 1 of 22)	intron (NM_001357281, intron 1 of 22)	4867.0	NM_001357281	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	26.89	24.42	20.35	15.52	16.79	26.53	16.9	9.29	17.49
Merged-chr14-31164371-1	chr14	31163871	31164871	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138672, intron 1 of 68)	intron (NM_138672, intron 1 of 68)	4270.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	10.87	12.9	7.4	18.89	16.33	26.53	17.96	21.22	9.99
Merged-chr9-99158329-3	chr9	99157812	99158812	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18101.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	20.59	14.75	24.05	18.89	14.0	13.66	26.4	22.11	17.49
Merged-chr18-25242347-1	chr18	25241847	25242847	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033532, intron 5 of 10)	intron (NM_001033532, intron 5 of 10)	73327.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	20.02	33.64	41.62	25.64	22.39	25.72	16.9	12.38	21.86
Merged-chr12-35308752-1	chr12	35308252	35309252	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113855.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.0	0.46	7.4	5.4	0.93	8.04	4.22	4.86	1.25
Merged-chr3-146685484-1	chr3	146684984	146685984	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34167.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	9.72	5.99	3.7	16.19	11.66	8.84	10.56	4.42	4.37
Merged-chr16-85800814-1	chr16	85800314	85801314	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009621, intron 1 of 8)	intron (NM_009621, intron 1 of 8)	2299.0	NM_009621	11504.0	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	4.0	5.07	1.85	26.31	14.93	7.23	4.22	2.65	3.75
Merged-chr14-66225155-3	chr14	66224663	66225663	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11339.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	180.2	141.92	85.1	148.44	97.97	75.56	105.62	100.37	94.3
Merged-chr19-21276776-1	chr19	21276276	21277276	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009551, intron 2 of 5)	intron (NM_009551, intron 2 of 5)	4498.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	14.87	12.9	10.17	14.17	13.53	13.66	6.34	7.07	5.62
Merged-chr12-112620766-3	chr12	112620228	112621228	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	681.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	89.24	66.35	91.57	107.95	73.24	64.3	72.88	54.83	31.23
Merged-chr12-80105382-1	chr12	80104882	80105882	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7631.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	8.01	5.53	5.55	10.8	4.67	6.43	3.17	1.33	11.24
Merged-chr12-86265788-1	chr12	86265288	86266288	+	884.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027405, intron 6 of 9)	RMER10B|LTR|ERVL	23930.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	28.6	27.19	57.35	22.27	18.66	28.13	38.02	42.01	28.73
Merged-chr12-64918322-1	chr12	64917822	64918822	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025605, intron 1 of 4)	CpG	411.0	NM_001025605	217648.0	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	28.03	12.44	1.85	49.25	14.0	16.08	26.4	11.05	8.74
Merged-chr8-11554875-2	chr8	11554374	11555374	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302458)	promoter-TSS (NM_001302458)	-888.0	NM_001302458	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	145.3	124.41	95.27	109.98	98.9	99.67	92.94	114.52	90.56
Merged-chr3-51226890-2	chr3	51226369	51227369	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	2422.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	11.44	4.61	5.55	8.77	4.67	6.43	7.39	11.5	7.49
Merged-chr2-84562377-2	chr2	84561879	84562879	+	884.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-55506.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	16.02	10.14	7.4	7.42	13.53	10.45	5.28	7.07	6.25
Merged-chr6-87027208-2	chr6	87026712	87027712	+	884.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020045, intron 7 of 7)	intron (NM_020045, intron 7 of 7)	-15634.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	5.15	4.15	7.4	3.37	4.67	2.41	6.34	3.54	2.5
Merged-chr16-50061918-3	chr16	50061429	50062429	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	L1_Mus2|LINE|L1	10923.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	7.44	4.61	7.4	6.07	5.13	6.43	6.34	4.42	7.49
Merged-chr4-129810409-3	chr4	129809914	129810914	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10065.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	193.93	212.42	168.34	250.32	206.2	218.63	369.66	450.13	149.89
Merged-chr7-101858597-3	chr7	101858089	101859089	+	883.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008034, exon 7 of 7)	exon (NM_008034, exon 7 of 7)	-1399.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	10.87	10.14	18.5	19.57	8.4	22.51	12.67	8.84	12.49
Merged-chr10-8795536-3	chr10	8795025	8796025	+	883.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	90545.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	11.44	11.52	17.57	8.1	13.53	14.47	11.62	10.17	21.86
Merged-chr15-97195899-3	chr15	97195405	97196405	+	883.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28661.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	15.45	15.21	5.55	17.54	13.06	16.08	11.62	17.24	13.74
Merged-chr4-16198932-3	chr4	16198424	16199424	+	883.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	34814.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	10.3	11.06	11.1	4.72	2.8	3.22	21.12	3.54	5.62
Merged-chr2-31135743-3	chr2	31135228	31136228	+	883.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	6280.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	43.48	35.94	37.0	49.93	26.12	26.53	42.25	38.47	14.99
Merged-chr12-83972323-3	chr12	83971831	83972831	+	883.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15530.0	NM_134188	171210.0	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	4.58	4.61	5.55	7.42	1.87	0.0	0.0	5.75	1.25
Merged-chr5-121835553-3	chr5	121834994	121835994	+	883.8722529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	610.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	132.14	144.69	124.87	153.84	128.29	188.09	196.45	225.51	109.29
Merged-chr8-112927047-3	chr8	112926535	112927535	+	883.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140227.0	NR_033584	791378.0	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	-	predicted gene 10280	ncRNA	14.87	5.99	3.7	11.47	1.4	6.43	29.57	7.07	2.5
Merged-chr15-73147166-3	chr15	73146632	73147632	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37815.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	26.31	17.05	22.2	18.22	7.0	12.86	16.9	10.61	9.99
Merged-chr10-44686857-3	chr10	44686362	44687362	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-228114.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	46.91	39.17	45.32	56.68	37.79	46.62	53.87	51.29	34.35
Merged-chr5-29841035-3	chr5	29840530	29841530	+	883.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105094.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	22.88	17.05	10.17	12.82	10.26	28.13	11.62	7.96	36.85
Merged-chr3-27213142-2	chr3	27212656	27213656	+	883.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	30152.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	8.01	9.22	5.55	29.01	17.73	32.15	31.69	17.69	14.36
Merged-chr2-102873586-1	chr2	102873086	102874086	+	883.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	28079.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.01	7.83	4.62	29.01	17.26	19.29	15.84	18.13	27.48
Merged-chr4-128971260-3	chr4	128970759	128971759	+	883.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8804.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	8.01	10.14	4.62	6.07	5.6	7.23	12.67	3.98	5.0
Merged-chr2-60902735-3	chr2	60902213	60903213	+	883.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-21275.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	103.54	106.44	37.0	111.33	103.1	106.9	137.3	171.56	99.3
Merged-chr10-111837020-3	chr10	111836536	111837536	+	883.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37340.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	6.86	6.45	4.62	8.77	3.73	5.63	3.17	3.1	8.12
Merged-chr4-109505077-2	chr4	109504577	109505577	+	883.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199090)	TTS (NM_001199090)	26127.0	NM_001199090	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	6.86	6.91	5.55	2.7	7.0	1.61	5.28	3.1	2.5
Merged-chr17-79786869-3	chr17	79786375	79787375	+	883.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-71834.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	13.73	5.07	0.92	5.4	4.2	12.86	6.34	5.31	4.37
Merged-chr3-79438466-3	chr3	79437981	79438981	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142953, intron 3 of 4)	intron (NM_001142953, intron 3 of 4)	93105.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	18.31	17.05	18.5	13.49	10.73	3.22	20.07	10.61	14.36
Merged-chr5-117483106-3	chr5	117482622	117483622	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	69120.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	14.87	12.9	5.55	11.47	11.2	8.04	8.45	10.61	3.75
Merged-chr3-88719175-3	chr3	88718616	88719616	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	intron (NR_028056, intron 3 of 5)	2262.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	29.17	30.87	50.87	33.74	34.52	44.21	51.75	48.2	39.35
Merged-chr2-72170719-3	chr2	72170204	72171204	+	883.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 3 of 26)	ORR1B2|LTR|ERVL-MaLR	-114933.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.86	3.69	1.85	14.17	11.66	8.84	12.67	14.59	3.75
Merged-chr17-36903761-1	chr17	36903261	36904261	+	883.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146077, intron 3 of 7)	ID_B1|SINE|B4	5631.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	5.72	6.45	1.85	8.1	5.13	4.82	1.06	0.88	4.37
Merged-chr1-177110800-3	chr1	177110306	177111306	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 2 of 12)	intron (NM_011785, intron 2 of 12)	137961.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	25.17	17.51	12.95	22.94	16.79	19.29	17.96	19.9	11.24
Merged-chr10-118581531-3	chr10	118581025	118582025	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25000.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	8.01	7.83	1.85	23.62	10.26	4.82	8.45	8.4	4.37
Merged-chrX-142697756-3	chrX	142697250	142698250	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	16024.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	61.78	70.04	51.8	51.95	58.31	57.07	58.09	73.84	41.22
Merged-chr2-167942984-3	chr2	167942499	167943499	+	883.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10672.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	56.63	58.98	56.42	76.24	66.71	62.7	70.76	50.41	58.08
Merged-chr17-63896054-2	chr17	63895561	63896561	+	883.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001286415, exon 2 of 18)	5' UTR (NM_001286415, exon 2 of 18)	17995.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	15.45	17.51	12.95	26.99	14.46	27.33	28.52	23.43	12.49
Merged-chrX-142361809-3	chrX	142361301	142362301	+	883.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	28734.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	73.79	110.59	33.3	99.86	128.29	79.58	76.05	145.03	45.59
Merged-chr5-21202299-3	chr5	21201782	21202782	+	883.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 3 of 26)	intron (NR_153365, intron 3 of 26)	16015.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	14.87	15.21	10.17	29.01	13.53	22.51	13.73	12.38	15.61
Merged-chr3-95135850-3	chr3	95135361	95136361	+	883.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	1773.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	51.48	55.75	36.07	43.18	56.45	62.7	97.17	141.49	51.84
Merged-chr2-166717442-3	chr2	166716821	166717821	+	883.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3489.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	34.9	24.88	22.2	82.32	36.85	36.17	67.6	53.5	27.48
Merged-chr6-137471251-3	chr6	137470724	137471724	+	883.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48671.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	28.6	24.88	18.5	16.87	7.93	17.68	10.56	5.31	9.99
Merged-chr10-82866519-3	chr10	82866026	82867026	+	883.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-100.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	32.61	19.81	12.95	37.11	19.59	35.37	69.71	44.22	29.98
Merged-chr6-136980523-2	chr6	136980016	136981016	+	883.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25993.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.43	3.23	3.7	7.42	2.8	2.41	11.62	15.48	9.99
Merged-chr11-11762234-3	chr11	11761733	11762733	+	883.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	46729.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	37.76	47.92	50.87	42.51	38.25	63.5	29.57	41.56	28.73
Merged-chrX-150588311-4	chrX	150587878	150588878	+	883.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029943)	promoter-TSS (NM_029943)	-223.0	NM_029943	77622.0	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	20.02	23.96	14.8	19.57	14.93	22.51	17.96	14.59	8.74
Merged-chr5-144772220-2	chr5	144771721	144772721	+	883.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081362, intron 3 of 70)	intron (NM_001081362, intron 3 of 70)	3429.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	7.44	8.75	12.02	15.52	17.73	16.88	27.46	21.67	22.48
Merged-chr1-64534108-3	chr1	64533606	64534606	+	883.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037726, intron 1 of 6)	intron (NM_001037726, intron 1 of 6)	1302.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	124.14	189.84	87.87	109.3	120.83	111.73	182.72	201.19	121.78
Merged-chr7-49754954-1	chr7	49754454	49755454	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4152.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.0	3.23	0.0	3.37	2.33	0.8	0.0	3.1	1.25
Merged-chr15-58264800-3	chr15	58264290	58265290	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-49898.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	19.45	14.75	7.4	49.93	18.66	29.74	23.24	21.67	16.24
Merged-chr14-78924826-2	chr14	78924317	78925317	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027906, intron 4 of 44)	intron (NM_027906, intron 4 of 44)	75639.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	4.0	1.84	3.7	8.77	9.33	7.23	4.22	0.88	2.5
Merged-chr2-174077301-3	chr2	174076807	174077807	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102423, intron 1 of 7)	(A)n|Simple_repeat|Simple_repeat	256.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	72.08	84.78	53.65	66.8	57.38	81.18	108.79	117.62	60.58
Merged-chr6-106440028-1	chr6	106439528	106440528	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	309009.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	6.86	8.29	11.1	24.29	22.86	23.31	15.84	15.92	7.49
Merged-chr14-32167483-1	chr14	32166983	32167983	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	1694.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	71.51	88.01	49.95	111.33	76.04	86.01	172.16	161.83	66.82
Merged-chr7-101108834-1	chr7	101108334	101109334	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001146010)	promoter-TSS (NM_001146010)	59.0	NM_199012	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	61.21	27.19	57.35	65.45	34.99	50.64	70.76	36.7	46.22
Merged-chr13-55858635-1	chr13	55858135	55859135	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27210.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	3.43	1.38	3.7	4.05	1.87	1.61	2.11	0.0	3.12
Merged-chr6-145767175-1	chr6	145766675	145767675	+	883.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41208.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	15.45	24.42	3.7	18.22	17.26	12.86	14.79	15.92	6.25
Merged-chr13-81072473-3	chr13	81071962	81072962	+	883.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	ERVB5_1-I_MM-int|LTR|ERVK	108388.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.01	22.58	3.7	13.49	6.06	10.45	14.79	19.46	13.12
Merged-chr15-17597308-3	chr15	17596793	17597793	+	883.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	772334.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	2.29	4.15	3.7	10.8	7.0	8.84	13.73	8.4	5.0
Merged-chr7-140956582-3	chr7	140956071	140957071	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030694)	promoter-TSS (NM_030694)	-610.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	60.07	55.75	53.65	63.42	43.39	69.93	68.65	38.47	86.81
Merged-chr7-13037550-3	chr7	13037052	13038052	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243968)	promoter-TSS (NM_001243968)	75.0	NM_001243968	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	108.69	92.62	69.37	114.03	83.51	93.24	130.97	68.09	79.32
Merged-chr11-58282709-3	chr11	58282217	58283217	+	883.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24352.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	5.72	5.07	7.4	4.05	8.4	9.65	0.0	4.42	2.5
Merged-chrX-75129742-3	chrX	75129240	75130240	+	883.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	1276.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	90.38	116.58	39.77	83.66	59.25	51.44	65.48	88.43	56.21
Merged-chr10-4174964-2	chr10	4174466	4175466	+	883.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38154.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	4.58	6.45	0.0	8.77	4.67	12.86	2.11	3.1	2.5
Merged-chr1-155087104-1	chr1	155086604	155087604	+	883.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3840.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	8.58	7.83	6.47	10.12	6.06	11.25	11.62	7.07	3.75
Merged-chr2-173738312-2	chr2	173737814	173738814	+	883.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	743.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	118.42	170.03	136.89	157.21	194.53	135.04	259.82	342.68	134.27
Merged-chr3-21986374-3	chr3	21985890	21986890	+	883.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90262.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.72	13.36	14.8	15.52	14.46	8.84	15.84	19.46	6.25
Merged-chr1-165734497-3	chr1	165733990	165734990	+	883.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-26396.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	45.76	19.81	22.2	75.57	23.33	31.35	54.92	45.99	35.6
Merged-chr11-98203767-2	chr11	98203276	98204276	+	883.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	471.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	318.06	355.26	222.91	277.98	307.9	197.73	302.07	347.54	155.51
Merged-chr15-58595128-3	chr15	58594673	58595673	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	179705.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	46.91	39.63	53.65	37.78	43.39	29.74	38.02	52.18	19.98
Merged-chr6-116671400-4	chr6	116670882	116671882	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	2454.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	112.12	87.09	70.3	96.48	36.85	66.71	152.09	126.9	89.31
Merged-chr4-135855264-1	chr4	135854764	135855764	+	883.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010178)	promoter-TSS (NM_010178)	-807.0	NM_001284196	14105.0	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	69.79	55.29	62.9	68.82	78.84	110.92	88.72	95.51	64.95
Merged-chr8-70426725-3	chr8	70426233	70427233	+	883.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004062, intron 1 of 13)	intron (NM_001004062, intron 1 of 13)	12840.0	NM_001004062	382056.0	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	9.15	12.9	2.77	14.17	7.46	7.23	15.84	7.96	9.37
Merged-chr12-86883227-6	chr12	86882801	86883801	+	883.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145836, exon 1 of 1)	exon (NM_145836, exon 1 of 1)	1513.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	46.34	27.65	26.82	35.09	33.59	23.31	70.76	44.22	36.85
Merged-chr12-85486952-3	chr12	85486477	85487477	+	883.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13087.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	109.83	129.02	102.67	95.81	85.84	93.24	128.85	120.71	93.68
Merged-chr10-88622296-3	chr10	88621796	88622796	+	883.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17144.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	146.45	200.44	62.9	146.41	170.28	117.35	88.72	127.34	51.84
Merged-chr6-31318665-2	chr6	31318154	31319154	+	883.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	80119.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	12.59	8.75	0.0	20.24	6.53	8.04	15.84	12.38	8.74
Merged-chr11-84855491-2	chr11	84854985	84855985	+	883.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153144, intron 5 of 13)	intron (NM_153144, intron 5 of 13)	-14520.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	17.73	13.36	19.42	11.47	15.86	22.51	19.01	23.43	8.12
Merged-chr12-99739167-3	chr12	99738678	99739678	+	883.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	intron (NM_030172, intron 5 of 5)	-111204.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	8.58	9.68	11.1	10.8	4.2	8.04	54.92	45.99	26.23
Merged-chr17-79715762-3	chr17	79715240	79716240	+	883.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009994)	promoter-TSS (NM_009994)	-699.0	NM_009994	13078.0	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.0	5.53	0.0	3.37	0.0	1.61	6.34	0.88	3.75
Merged-chr4-32560470-3	chr4	32559995	32560995	+	883.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11167.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	77.8	90.77	86.95	134.27	100.77	83.59	130.97	107.89	62.45
Merged-chr11-78247950-3	chr11	78247459	78248459	+	883.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359106, intron 1 of 3)	RLTR12E|LTR|ERVK	2208.0	NM_001359106	20316.0	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	18.31	19.81	14.8	13.49	11.66	12.86	20.07	16.36	11.87
Merged-chr8-26689359-2	chr8	26688864	26689864	+	883.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135059.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	28.6	48.38	37.0	44.53	44.78	38.58	92.94	87.55	42.47
Merged-chr8-122464062-3	chr8	122463566	122464566	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3374.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	10.3	5.07	1.85	14.17	4.67	14.47	15.84	8.4	5.0
Merged-chr12-101740698-3	chr12	101740190	101741190	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-22167.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	42.9	31.33	33.3	19.57	17.73	17.68	20.07	17.69	14.99
Merged-chr17-34118385-3	chr17	34117897	34118897	+	883.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	CpG	1503.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	86.38	46.54	66.6	44.53	35.45	53.85	74.99	54.39	38.72
Merged-chr17-8838438-3	chr17	8837934	8838934	+	883.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-11551.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	30.89	20.74	20.35	20.92	18.19	14.47	9.51	3.1	5.0
Merged-chr11-119677339-2	chr11	119676830	119677830	+	883.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	74425.0	NM_028898	74370.0	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	9.72	3.69	3.7	6.07	7.0	9.65	7.39	1.77	8.74
Merged-chr2-34914123-4	chr2	34913600	34914600	+	883.162476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-124.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	25.74	11.98	11.1	34.41	31.26	16.88	26.4	22.55	19.98
Merged-chr10-75853639-3	chr10	75853120	75854120	+	883.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6630.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	4.0	2.3	7.4	8.1	2.33	8.04	5.28	0.44	2.5
Merged-chr11-100360410-3	chr11	100359915	100360915	+	883.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4274.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	8.58	10.6	5.55	6.75	1.87	6.43	5.28	5.75	8.74
Merged-chr2-160348290-3	chr2	160347812	160348812	+	883.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18753.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	6.86	7.83	12.95	2.7	5.6	8.04	17.96	17.24	6.87
Merged-chr10-34532794-3	chr10	34532283	34533283	+	883.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358769, intron 2 of 8)	MTD|LTR|ERVL-MaLR	49383.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	6.29	5.99	5.55	7.42	3.73	3.22	2.11	2.21	1.25
Merged-chr7-98872111-2	chr7	98871605	98872605	+	883.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33260.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	8.01	3.23	0.0	7.42	4.67	3.22	0.0	4.86	1.25
Merged-chr8-95141198-3	chr8	95140689	95141689	+	883.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 1 of 19)	intron (NM_010631, intron 1 of 19)	1351.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	29.17	35.94	58.27	35.09	27.06	60.28	47.53	49.08	43.72
Merged-chr1-59755487-3	chr1	59754987	59755987	+	883.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8792.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	15.45	13.36	5.55	14.84	14.0	9.65	22.18	23.43	9.99
Merged-chr4-55591679-3	chr4	55591154	55592154	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-59179.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.15	4.61	6.47	6.07	4.67	6.43	13.73	10.61	19.98
Merged-chr6-134705903-3	chr6	134705394	134706394	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	64954.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	97.82	112.89	83.25	51.95	58.31	46.62	71.82	77.38	44.34
Merged-chr2-181239983-1	chr2	181239483	181240483	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	2044.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	6.86	2.76	1.85	16.87	5.13	9.65	69.71	44.66	38.1
Merged-chrUn_JH584304-64262-1	chrUn_JH584304	63762	64762	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4573.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	66.54	46.87	0.0
Merged-chr9-115777315-1	chr9	115776815	115777815	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132140.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	7.44	5.53	5.55	4.05	2.33	0.0	3.17	3.54	3.12
Merged-chr2-172378526-1	chr2	172378026	172379026	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024199, intron 5 of 5)	intron (NM_024199, intron 5 of 5)	7523.0	NM_024199	67337.0	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	3.43	2.3	7.4	6.07	1.87	0.8	5.28	0.88	5.62
Merged-chr11-70466909-2	chr11	70466433	70467433	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348337)	TTS (NM_001348337)	-6949.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	144.73	127.64	61.97	160.58	77.44	124.59	121.46	155.2	103.67
Merged-chr9-44655339-1	chr9	44654839	44655839	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17894.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	13.16	5.53	3.7	14.17	15.39	6.43	8.45	15.48	1.87
Merged-chr3-129437874-1	chr3	129437374	129438374	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4201.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	2.29	0.46	1.85	6.07	3.27	1.61	3.17	1.77	2.5
Merged-chr5-5334130-3	chr5	5333636	5334636	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	ORR1D2|LTR|ERVL-MaLR	46115.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	22.31	16.13	25.9	10.12	6.53	19.29	24.29	22.99	9.99
Merged-chr15-8569288-1	chr15	8568788	8569788	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-124825.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	2.86	0.92	0.0	6.75	6.53	5.63	1.06	2.65	9.99
Merged-chr15-74992924-1	chr15	74992424	74993424	+	883.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5107.0	NM_001271417	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	6.86	3.23	12.95	8.1	2.8	6.43	20.07	35.37	9.99
Merged-chr15-53113996-1	chr15	53113496	53114496	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	232187.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.58	14.28	8.32	11.47	9.8	12.86	11.62	0.44	9.37
Merged-chr9-48493425-1	chr9	48492925	48493925	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001326356, exon 3 of 4)	exon (NM_001326356, exon 3 of 4)	1905.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	64.07	73.26	58.27	42.51	41.05	64.3	51.75	36.26	34.97
Merged-chr9-43284379-1	chr9	43283879	43284879	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24500.0	NM_001243261	235302.0	Mm.135745	NM_001243261		D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	3.43	5.07	1.85	0.67	2.8	0.0	0.0	1.77	0.62
Merged-chr5-146720094-1	chr5	146719594	146720594	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	74862.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	4.58	1.38	5.55	6.07	2.8	4.82	6.34	3.1	4.37
Merged-chr8-27253857-3	chr8	27253349	27254349	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6478.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	2.86	4.15	0.0	2.02	3.73	4.82	5.28	2.21	3.75
Merged-chrX-38459913-2	chrX	38459416	38460416	+	883.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3456.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	20.02	21.2	29.6	37.78	26.59	23.31	23.24	20.34	21.23
Merged-chr10-80054717-3	chr10	80054191	80055191	+	883.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110342, intron 3 of 6)	intron (NR_110342, intron 3 of 6)	672.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	164.75	112.89	109.14	138.99	104.96	121.37	182.72	164.04	101.8
Merged-chr7-102229856-3	chr7	102229358	102230358	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	6830.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	42.33	42.85	55.5	38.46	33.12	28.94	40.14	52.18	45.59
Merged-chr6-57521043-3	chr6	57520547	57521547	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 3 of 6)	intron (NM_175523, intron 3 of 6)	14379.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	48.05	29.95	30.52	29.69	30.79	12.86	39.08	29.18	21.23
Merged-chr11-3194783-3	chr11	3194287	3195287	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1324.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	42.9	63.13	99.89	51.28	55.98	77.16	69.71	34.93	98.05
Merged-chr14-118947343-3	chr14	118946836	118947836	+	882.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	PB1D10|SINE|Alu	9404.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	10.87	8.29	12.95	10.8	7.0	6.43	10.56	15.48	13.12
Merged-chr2-129328453-2	chr2	129327950	129328950	+	882.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-18478.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	8.01	5.99	3.7	4.05	5.6	11.25	6.34	4.86	4.37
Merged-chr9-78110321-3	chr9	78109834	78110834	+	882.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163780, intron 1 of 13)	intron (NM_001163780, intron 1 of 13)	1142.0	NM_001163780	56542.0	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	84.09	129.02	59.2	70.85	99.37	89.22	73.93	62.79	68.7
Merged-chr10-108157972-3	chr10	108157460	108158460	+	882.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-4440.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	9.15	6.45	2.77	9.45	9.33	1.61	2.11	4.42	1.25
Merged-chr11-4270977-2	chr11	4270476	4271476	+	882.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008501, exon 4 of 4)	3' UTR (NM_008501, exon 4 of 4)	4180.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	13.73	3.69	7.4	6.07	3.27	2.41	2.11	1.33	3.12
Merged-chr8-111726320-3	chr8	111725823	111726823	+	882.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	5813.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	4.58	5.53	3.7	11.47	2.8	2.41	1.06	2.21	5.62
Merged-chr6-149132535-3	chr6	149132047	149133047	+	882.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8966.0	NM_001252096	320204.0	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	8.58	5.07	3.7	6.07	5.13	3.22	4.22	8.84	0.0
Merged-chr17-70846411-3	chr17	70845905	70846905	+	882.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164077, exon 1 of 2)	5' UTR (NM_001164077, exon 1 of 2)	372.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	22.88	13.82	13.87	13.49	16.33	20.9	19.01	14.59	16.86
Merged-chr17-26584607-3	chr17	26584091	26585091	+	882.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23079.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	21.17	17.97	14.8	30.36	23.79	28.13	20.07	19.9	7.49
Merged-chr3-86842784-2	chr3	86842277	86843277	+	882.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	78107.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	32.04	33.18	40.7	19.57	14.93	20.9	7.39	11.05	8.74
Merged-chr2-124642376-3	chr2	124641879	124642879	+	882.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-11202.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	46.91	64.97	43.47	51.28	58.31	38.58	36.97	57.92	34.35
Merged-chr15-98181507-2	chr15	98180994	98181994	+	882.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13688.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	4.58	1.38	6.47	5.4	3.73	4.02	4.22	2.65	2.5
Merged-chr13-23401817-3	chr13	23401329	23402329	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	22037.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	10.87	11.52	12.95	8.77	11.2	9.65	3.17	1.33	0.62
Merged-chr17-31067263-3	chr17	31066735	31067735	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	9541.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	65.21	44.24	57.35	119.43	75.57	73.95	53.87	68.09	24.36
Merged-chr2-35729685-3	chr2	35729175	35730175	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001114125, exon 17 of 17)	3' UTR (NM_001114125, exon 17 of 17)	32943.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	21.74	30.41	37.0	29.01	33.12	37.78	33.8	16.8	13.12
Merged-chr8-105331758-1	chr8	105331258	105332258	+	882.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177699, exon 15 of 22)	exon (NM_177699, exon 15 of 22)	5394.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	13.16	12.9	19.42	24.29	13.06	20.9	31.69	24.76	19.98
Merged-chr2-50813943-3	chr2	50813467	50814467	+	882.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95717.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	16.59	26.73	5.55	40.48	36.39	36.97	35.91	48.2	38.1
Merged-chr19-21785277-3	chr19	21784799	21785799	+	882.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	6959.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	50.34	59.44	49.95	33.06	29.86	36.17	29.57	42.45	12.49
Merged-chr7-101296844-3	chr7	101296358	101297358	+	882.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001111111, exon 5 of 18)	exon (NM_001111111, exon 5 of 18)	5230.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	18.88	11.98	12.95	15.52	7.46	3.22	9.51	16.36	8.12
Merged-chr7-13302966-3	chr7	13302464	13303464	+	882.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083188, intron 19 of 28)	intron (NM_001083188, intron 19 of 28)	-22703.0	NM_001168504	232889.0	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	4.58	6.91	6.47	2.7	2.8	4.82	5.28	4.86	3.75
Merged-chr5-20256301-2	chr5	20255789	20256789	+	882.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	348771.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	65.79	48.38	58.27	47.9	37.32	23.31	34.85	32.28	33.1
Merged-chr13-60660075-1	chr13	60659575	60660575	+	882.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	57864.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	33.75	43.31	33.3	52.63	62.98	87.61	32.74	13.71	19.98
Merged-chr5-113165059-2	chr5	113164522	113165522	+	882.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1709.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	19.45	8.75	10.17	3.37	1.87	3.22	2.11	1.33	2.5
Merged-chr1-59623494-2	chr1	59622999	59623999	+	882.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	47335.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	4.58	3.23	2.77	2.02	4.2	0.0	4.22	4.42	1.25
Merged-chr6-119395773-3	chr6	119395231	119396231	+	882.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	-6997.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	38.9	33.18	22.2	33.06	33.59	34.56	36.97	18.13	19.98
Merged-chr18-69346613-3	chr18	69346179	69347179	+	882.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 1 of 19)	intron (NM_001361128, intron 1 of 19)	519.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	45.76	37.32	47.17	56.0	31.26	34.56	71.82	37.14	28.1
Merged-chr7-122329797-3	chr7	122329301	122330301	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	40676.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	13.16	7.37	21.27	55.33	38.25	22.51	23.24	22.55	13.12
Merged-chr9-121904575-3	chr9	121904080	121905080	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276719, intron 2 of 3)	intron (NM_001276719, intron 2 of 3)	6225.0	NM_021609	59289.0	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	12.59	14.75	18.5	12.14	4.67	4.82	13.73	7.96	8.74
Merged-chr12-116436352-3	chr12	116435866	116436866	+	882.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 17 of 28)	Lx8|LINE|L1	30964.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.72	14.75	13.87	4.72	7.0	30.54	58.09	30.95	32.48
Merged-chr1-33765738-3	chr1	33765234	33766234	+	882.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359275, intron 14 of 15)	intron (NM_001359275, intron 14 of 15)	-7984.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	12.59	10.14	24.97	12.82	6.06	12.86	17.96	12.38	5.0
Merged-chr7-115251765-3	chr7	115251265	115252265	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	300491.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	5.15	5.07	3.7	4.05	2.8	0.0	4.22	2.65	6.25
Merged-chr17-25801235-3	chr17	25800772	25801772	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4227.0	NM_133719	70083.0	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|EyeLinc16|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	6.29	3.23	0.0	3.37	2.8	4.82	3.17	0.88	3.75
Merged-chr9-94734547-1	chr9	94734047	94735047	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 4 of 15)	intron (NM_177909, intron 4 of 15)	-17282.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	13.73	16.59	17.57	15.52	11.66	12.06	11.62	3.98	8.74
Merged-chr10-115806131-3	chr10	115805614	115806614	+	882.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-11170.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	2.86	5.99	0.92	10.12	8.4	3.22	0.0	2.65	2.5
Merged-chr3-14579750-1	chr3	14579250	14580250	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007892, intron 1 of 7)	intron (NM_007892, intron 1 of 7)	1079.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	27.46	29.49	27.75	43.86	37.79	37.78	13.73	26.09	24.98
Merged-chr1-71729168-1	chr1	71728668	71729668	+	882.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75833.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	4.0	6.45	3.7	3.37	3.73	4.02	2.11	3.1	6.25
Merged-chr17-10093651-2	chr17	10093154	10094154	+	882.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225707.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	2.29	5.53	1.85	2.02	0.93	8.84	6.34	2.21	1.87
Merged-chr3-115712975-2	chr3	115712489	115713489	+	882.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007901, exon 2 of 2)	5' UTR (NM_007901, exon 2 of 2)	2066.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.86	2.76	0.0	9.45	6.06	1.61	6.34	1.33	3.75
Merged-chr19-41775993-3	chr19	41775496	41776496	+	882.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	26088.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	20.59	19.81	6.47	29.69	20.06	38.58	124.63	119.39	63.7
Merged-chr12-52525069-3	chr12	52524563	52525563	+	882.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	8986.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	52.63	47.92	17.57	37.78	33.12	25.72	66.54	63.23	30.6
Merged-chr11-120580354-3	chr11	120579858	120580858	+	882.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133796, exon 2 of 6)	exon (NM_133796, exon 2 of 6)	1262.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	122.99	100.91	110.99	97.16	83.51	113.33	94.0	87.55	57.46
Merged-chr13-94301202-4	chr13	94300730	94301730	+	882.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15399.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	56.63	48.38	39.77	99.18	93.77	74.75	61.26	53.94	21.23
Merged-chr15-55106731-3	chr15	55106217	55107217	+	882.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045093, intron 4 of 4)	intron (NR_045093, intron 4 of 4)	-5600.0	NM_145470	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	1.72	4.61	1.85	3.37	2.33	3.22	5.28	0.0	0.0
Merged-chr5-67427732-4	chr5	67427189	67428189	+	882.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164806, exon 1 of 5)	5' UTR (NM_001164806, exon 1 of 5)	110.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	24.03	13.36	22.2	51.28	20.53	34.56	48.58	14.15	23.73
Merged-chr5-99364700-1	chr5	99364200	99365200	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111773.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	78.94	104.14	76.77	177.45	196.4	178.44	128.85	144.15	66.82
Merged-chr19-46340962-3	chr19	46340456	46341456	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1806.0	NR_030468	751550.0		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	19.45	27.19	42.55	31.71	18.19	8.04	15.84	19.01	9.99
Merged-chr11-115071120-2	chr11	115070626	115071626	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9087.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	253.42	224.86	191.47	93.11	51.32	71.54	63.37	29.18	44.34
Merged-chr11-49997426-1	chr11	49996926	49997926	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27905.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.15	2.3	3.7	7.42	6.06	8.04	4.22	4.42	8.12
Merged-chr5-36830131-3	chr5	36829619	36830619	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 1 of 18)	intron (NM_008550, intron 1 of 18)	530.0	NM_008550	17160.0	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	72.65	77.41	89.72	81.64	127.82	102.08	91.89	80.03	58.71
Merged-chr7-81121255-2	chr7	81120757	81121757	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004184, intron 4 of 17)	intron (NM_001004184, intron 4 of 17)	6458.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	10.3	3.69	5.55	9.45	3.27	0.0	4.22	3.1	0.62
Merged-chr2-45346556-2	chr2	45346066	45347066	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-229124.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	2.86	3.69	3.7	4.72	8.86	4.02	4.22	3.1	2.5
Merged-chr5-99365353-2	chr5	99364819	99365819	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-112392.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	66.93	73.73	60.12	151.81	155.35	110.92	99.28	90.2	43.09
Merged-chr9-36916591-1	chr9	36916091	36917091	+	882.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 7 of 12)	intron (NM_001029838, intron 7 of 12)	83017.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	2.29	2.76	0.0	2.7	0.93	0.0	2.11	0.0	2.5
Merged-chr11-55240783-3	chr11	55240290	55241290	+	882.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36450.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	4.0	2.76	1.85	9.45	6.53	3.22	3.17	3.98	2.5
Merged-chr7-27332797-3	chr7	27332294	27333294	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	854.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	9.15	4.61	3.7	6.07	2.8	1.61	11.62	4.42	2.5
Merged-chr3-69127768-3	chr3	69127273	69128273	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008467)	promoter-TSS (NM_008467)	-681.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	212.8	175.1	99.89	263.81	231.39	200.14	174.27	205.61	87.43
Merged-chr3-10273355-3	chr3	10272857	10273857	+	882.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	Lx8|LINE|L1	-19105.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	5.72	3.69	3.7	20.24	7.0	14.47	8.45	5.75	7.49
Merged-chr4-3529907-2	chr4	3529400	3530400	+	882.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7190.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	16.59	17.97	14.8	33.74	27.52	44.21	28.52	27.41	33.72
Merged-chr2-129083698-3	chr2	129083201	129084201	+	882.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027192, intron 5 of 6)	intron (NM_027192, intron 5 of 6)	-17295.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	10.3	7.37	12.02	8.1	8.86	6.43	7.39	6.63	6.25
Merged-chr10-67582110-3	chr10	67581616	67582616	+	882.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10157.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	24.6	12.44	16.65	20.92	9.8	11.25	13.73	18.13	15.61
Merged-chr10-83095032-3	chr10	83094531	83095531	+	882.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	MIRb|SINE|MIR	109534.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.15	0.92	0.0	10.12	0.93	4.82	1.06	1.77	1.87
Merged-chr11-82041900-4	chr11	82041408	82042408	+	882.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-3804.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	72.08	43.77	21.27	52.63	28.46	16.88	64.43	57.04	33.72
Merged-chr4-83303679-3	chr4	83303152	83304152	+	882.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	20537.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	33.75	42.39	20.35	30.36	32.66	20.9	39.08	41.56	26.23
Merged-chr9-115805466-3	chr9	115804977	115805977	+	882.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103978.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	5.72	5.99	9.25	4.05	8.86	4.82	12.67	8.4	6.87
Merged-chr1-36303591-3	chr1	36303091	36304091	+	882.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4142.0	NM_001172206	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	9.72	4.61	5.55	12.82	3.73	0.0	10.56	2.21	2.5
Merged-chr4-9027992-3	chr4	9027497	9028497	+	882.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-241296.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.0	4.61	0.0	10.8	4.2	8.04	3.17	8.84	0.0
Merged-chr15-59480783-1	chr15	59480283	59481283	+	882.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106585.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	18.88	11.98	20.35	29.69	13.53	26.53	12.67	6.19	19.98
Merged-chr13-9834381-3	chr13	9833874	9834874	+	882.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-69053.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.57	0.46	3.7	0.0	0.0	8.04	0.0	1.77	8.74
Merged-chr3-152262169-3	chr3	152261673	152262673	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	3622.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	46.34	27.65	43.47	43.86	35.92	14.47	19.01	17.24	11.24
Merged-chr11-8661017-3	chr11	8660581	8661581	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	B1F|SINE|Alu	3454.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	36.04	34.56	45.32	64.1	41.52	59.48	34.85	13.71	15.61
Merged-chr10-77566868-3	chr10	77566375	77567375	+	882.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14780.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	17.73	19.35	10.17	14.17	14.0	11.25	21.12	28.3	13.74
Merged-chr11-57681855-1	chr11	57681355	57682355	+	882.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-32361.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	20.02	23.5	29.6	46.56	58.78	40.99	16.9	9.73	11.24
Merged-chr3-138521085-3	chr3	138520590	138521590	+	882.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5101.0	NM_007917	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	47.48	47.46	38.85	79.62	64.84	49.83	85.55	65.88	53.71
Merged-chr8-41284631-3	chr8	41284174	41285174	+	882.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 16 of 37)	RCHARR1|DNA|hAT-Charlie	44915.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	17.73	26.26	20.35	35.09	31.26	28.94	88.72	116.73	45.59
Merged-chr14-75065494-3	chr14	75065005	75066005	+	882.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	49478.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	49.2	41.47	43.47	50.6	48.98	45.01	51.75	58.37	51.84
Merged-chr16-21842320-3	chr16	21841829	21842829	+	882.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47982.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	14.3	4.15	0.0	2.7	5.6	3.22	4.22	3.1	3.75
Merged-chr3-81050037-2	chr3	81049543	81050543	+	882.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	13627.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	65.21	70.5	49.02	107.95	57.38	63.5	42.25	42.45	25.61
Merged-chr5-122274942-3	chr5	122274424	122275424	+	882.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9474.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	5.15	4.61	1.85	6.07	9.33	1.61	6.34	3.98	6.25
Merged-chr13-58453220-3	chr13	58452705	58453705	+	882.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49862.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	148.16	148.83	89.72	168.0	141.35	100.47	197.51	169.79	83.69
Merged-chr17-74020714-3	chr17	74020232	74021232	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053188, intron 4 of 4)	intron (NM_053188, intron 4 of 4)	27184.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	10.87	6.45	5.55	11.47	11.2	7.23	12.67	11.94	1.25
Merged-chr11-49243409-3	chr11	49242920	49243920	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010794)	promoter-TSS (NM_010794)	-771.0	NM_010794	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	148.73	143.76	57.35	145.74	145.55	86.01	128.85	141.05	77.44
Merged-chr9-59542694-3	chr9	59542170	59543170	+	882.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	3130.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	88.67	84.78	91.57	84.34	72.31	80.38	99.28	95.07	93.05
Merged-chr12-80835176-4	chr12	80834699	80835699	+	882.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	Lx5|LINE|L1	44667.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	78.37	46.08	50.87	60.72	26.59	33.76	90.83	85.34	44.97
Merged-chr3-89807334-2	chr3	89806828	89807828	+	882.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24042.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	16.59	9.68	21.27	14.17	9.8	33.76	12.67	14.59	9.99
Merged-chr7-99164038-2	chr7	99163541	99164541	+	882.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	18672.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	10.87	5.99	3.7	9.45	1.4	7.23	4.22	3.1	5.0
Merged-chr16-25042137-2	chr16	25041648	25042648	+	882.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17491.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	14.3	10.14	18.5	13.49	15.39	17.68	11.62	4.42	9.99
Merged-chr2-167688284-3	chr2	167687800	167688800	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009883)	promoter-TSS (NM_009883)	-615.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	141.3	43.31	53.65	103.23	48.98	107.71	58.09	22.11	41.84
Merged-chr11-97883665-3	chr11	97883161	97884161	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081435, intron 1 of 10)	CpG	493.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	41.76	60.36	106.37	47.9	60.18	86.01	96.11	87.99	65.58
Merged-chr19-37554096-3	chr19	37553596	37554596	+	882.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175353, intron 1 of 21)	intron (NM_175353, intron 1 of 21)	3678.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	135.0	156.21	97.12	112.0	95.63	100.47	124.63	153.87	119.28
Merged-chr14-25608319-2	chr14	25607864	25608864	+	882.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	4851.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	30.32	16.59	22.2	18.89	17.26	16.08	30.63	16.36	1.87
Merged-chr12-35317327-2	chr12	35316864	35317864	+	882.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	32.04	44.24	24.97	37.78	36.85	36.97	30.63	29.18	34.35
Merged-chr8-4616194-1	chr8	4615694	4616694	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145591, intron 1 of 3)	intron (NM_145591, intron 1 of 3)	3024.0	NM_145591	233987.0	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	14.3	15.21	10.17	9.45	6.06	8.04	17.96	19.9	13.12
Merged-chr4-53337778-1	chr4	53337278	53338278	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67546.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	3.43	1.38	3.7	6.75	2.8	4.82	4.22	1.77	3.75
Merged-chr10-24111334-1	chr10	24110834	24111834	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1800.0	NM_001010831	503558.0	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	6.29	2.76	1.85	5.4	4.2	1.61	4.22	1.77	5.0
Merged-chr6-52192005-3	chr6	52191541	52192541	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008265)	promoter-TSS (NM_008265)	-338.0	NM_008265	15401.0	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	6.86	8.29	3.7	1.35	3.27	9.65	13.73	10.61	11.24
Merged-chr10-96732203-3	chr10	96731688	96732688	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115187.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	13.16	7.37	18.5	19.57	12.6	19.29	22.18	10.61	14.99
Merged-chr11-90250575-1	chr11	90250075	90251075	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026178, intron 1 of 6)	intron (NM_026178, intron 1 of 6)	1099.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	26.31	33.64	19.42	45.88	51.78	47.42	25.35	13.71	8.12
Merged-chr12-98215766-1	chr12	98215266	98216266	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008079, intron 12 of 16)	intron (NM_008079, intron 12 of 16)	43693.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	8.58	6.45	2.77	6.07	12.13	7.23	5.28	2.65	3.12
Merged-chr6-113657200-2	chr6	113656706	113657706	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	18739.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	23.45	17.05	26.82	29.69	7.93	14.47	32.74	16.8	33.72
Merged-chr16-21331445-1	chr16	21330945	21331945	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_131983)	TTS (NR_131983)	1911.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	23.45	16.59	10.17	10.12	11.66	11.25	4.22	7.52	6.25
Merged-chr2-6476914-2	chr2	6476412	6477412	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124176.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	12.01	11.52	2.77	13.49	10.26	2.41	17.96	11.05	1.25
Merged-chr1-93165587-2	chr1	93165090	93166090	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-2833.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	1.72	5.99	5.55	4.72	6.53	3.22	4.22	3.1	1.87
Merged-chr10-110919169-3	chr10	110918653	110919653	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1023.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	17.16	18.89	1.85	51.95	35.45	23.31	23.24	25.2	14.36
Merged-chr17-49384466-1	chr17	49383966	49384966	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43898.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	6.29	4.61	2.77	3.37	3.73	8.04	4.22	3.1	5.0
Merged-chr17-62884438-1	chr17	62883938	62884938	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3121.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.0	0.46	5.55	5.4	3.73	0.0	3.17	5.31	2.5
Merged-chr2-128243861-1	chr2	128243361	128244361	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	116286.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.57	2.3	3.7	6.75	8.86	8.04	4.22	1.77	2.5
Merged-chr14-14971258-3	chr14	14970759	14971759	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 29 of 34)	intron (NM_001195229, intron 29 of 34)	150444.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.86	5.07	1.85	4.05	1.87	7.23	4.22	2.65	1.87
Merged-chr7-138845726-3	chr7	138845228	138846228	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026391)	promoter-TSS (NM_026391)	539.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	177.91	252.51	150.77	171.38	257.98	221.85	208.07	235.23	159.88
Merged-chr2-155541247-2	chr2	155540734	155541734	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	MIRc|SINE|MIR	15696.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	15.45	12.9	11.1	64.1	52.72	57.07	80.27	56.6	34.97
Merged-chr1-166349968-1	chr1	166349468	166350468	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-29199.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	7.44	1.84	2.77	5.4	3.27	0.0	0.0	0.44	4.37
Merged-chr17-51832429-1	chr17	51831929	51832929	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	CpG	218.0	NM_009122	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	5.15	2.76	3.7	5.4	3.73	0.0	5.28	0.88	4.37
Merged-chr2-85027472-1	chr2	85026972	85027972	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145526, intron 1 of 11)	intron (NM_145526, intron 1 of 11)	8362.0	NM_145526	228139.0	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	3.43	1.84	3.7	11.47	3.27	4.82	6.34	0.44	1.25
Merged-chr7-106551426-3	chr7	106550939	106551939	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93206.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	73.22	95.84	49.95	71.52	67.64	61.89	39.08	34.49	23.11
Merged-chr13-34709780-1	chr13	34709280	34710280	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29862.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	46.91	55.75	14.8	73.54	74.64	43.4	35.91	37.14	14.99
Merged-chr14-33215376-1	chr14	33214876	33215876	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-1447.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	16.59	14.28	12.95	18.22	16.79	32.15	7.39	6.63	8.74
Merged-chr3-9609157-2	chr3	9608679	9609679	+	882.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	CpG	906.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	13.16	3.69	10.17	8.1	4.2	8.04	16.9	9.29	3.75
Merged-chr17-44736199-1	chr17	44735699	44736699	+	882.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271630)	promoter-TSS (NM_001271630)	-23.0	NM_001271631	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	1.14	2.3	0.0	2.7	4.67	4.02	6.34	1.33	3.75
Merged-chr13-35953133-2	chr13	35952639	35953639	+	881.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14767.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	13.16	6.91	0.0	6.75	4.67	8.84	2.11	4.86	3.75
Merged-chr7-27397783-3	chr7	27397283	27398283	+	881.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032610, intron 18 of 35)	intron (NM_032610, intron 18 of 35)	-1230.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	3.43	0.0	1.85	0.67	2.33	0.0	6.34	0.44	1.25
Merged-chr19-56673138-3	chr19	56672636	56673636	+	881.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-49236.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	13.16	10.14	3.7	12.82	9.33	11.25	16.9	9.73	19.98
Merged-chr8-13596122-4	chr8	13595568	13596568	+	881.9285890000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 5 of 23)	intron (NM_009025, intron 5 of 23)	-33607.0	NM_001080781	66501.0	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	102.4	112.89	96.2	94.46	106.36	118.96	76.05	88.43	60.58
Merged-chr2-93597930-3	chr2	93597431	93598431	+	881.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44503.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	12.01	19.81	23.12	15.52	17.26	12.86	10.56	12.82	9.99
Merged-chr15-8382467-3	chr15	8381973	8382973	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	61990.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	9.15	9.68	7.4	11.47	5.13	4.82	9.51	3.54	9.37
Merged-chr11-72570786-3	chr11	72570286	72571286	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20540.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	9.72	2.3	5.55	6.75	4.67	3.22	8.45	3.54	1.87
Merged-chr11-79658386-3	chr11	79657886	79658886	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	MIRb|SINE|MIR	16700.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	16.59	11.06	12.95	4.05	4.67	3.22	22.18	22.11	7.49
Merged-chr3-37142040-3	chr3	37141538	37142538	+	881.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	-16084.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	4.58	7.37	11.1	17.54	9.33	16.88	8.45	11.5	5.0
Merged-chr10-61706632-3	chr10	61706123	61707123	+	881.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8640.0	NM_178058	71361.0	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	3.43	5.07	4.62	6.07	6.06	6.43	1.06	12.38	8.12
Merged-chr11-100575097-4	chr11	100574570	100575570	+	881.8839109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146318)	promoter-TSS (NM_001146318)	131.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	76.66	77.41	75.85	78.94	66.71	72.34	121.46	107.0	96.18
Merged-chr4-130878685-3	chr4	130878171	130879171	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34663.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	14.3	5.99	5.55	8.1	3.27	8.04	10.56	5.31	3.12
Merged-chr10-118882695-3	chr10	118882175	118883175	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13772.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	53.77	42.39	49.95	51.95	34.52	55.46	43.3	23.43	27.48
Merged-chr8-80031428-3	chr8	80030927	80031927	+	881.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	26581.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	28.6	39.17	29.6	37.78	29.86	25.72	61.26	58.81	26.85
Merged-chr1-24682094-2	chr1	24681573	24682573	+	881.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	MTC|LTR|ERVL-MaLR	3155.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	9.15	20.27	10.17	22.27	13.53	20.9	24.29	29.18	23.73
Merged-chr6-100163943-3	chr6	100163447	100164447	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123411.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	17.16	18.43	8.32	20.24	23.33	20.9	25.35	12.38	19.36
Merged-chr4-46375090-3	chr4	46374568	46375568	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14355.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	13.73	18.89	5.55	29.69	22.39	16.88	15.84	5.75	8.74
Merged-chr15-67178034-3	chr15	67177568	67178568	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	52.63	72.8	66.6	60.72	69.04	101.28	72.88	72.52	57.46
Merged-chr15-97705773-3	chr15	97705248	97706248	+	881.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028003)	promoter-TSS (NM_028003)	74.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	19.45	14.75	16.65	22.27	12.6	27.33	17.96	8.4	14.99
Merged-chr6-136814931-3	chr6	136814460	136815460	+	881.8253779999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 11 of 11)	B2_Mm1a|SINE|B2	6712.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	37.76	19.81	35.15	18.22	14.46	23.31	15.84	9.29	13.74
Merged-chr10-93429683-2	chr10	93429177	93430177	+	881.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3430.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	4.58	5.53	7.4	8.1	4.67	1.61	5.28	0.44	3.75
Merged-chr13-52079410-3	chr13	52078902	52079902	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17339.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	96.11	61.75	52.72	78.94	65.78	84.4	78.16	63.23	48.71
Merged-chr17-6963166-3	chr17	6962663	6963663	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2007.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	20.02	29.03	11.1	12.82	14.46	14.47	70.76	76.05	36.85
Merged-chr12-54981167-3	chr12	54980678	54981678	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 2 of 26)	MIRb|SINE|MIR	5158.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	33.18	26.73	18.5	29.69	19.59	9.65	53.87	32.72	14.36
Merged-chr13-20798106-3	chr13	20797615	20798615	+	881.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4002.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	46.34	75.57	51.8	49.93	39.65	37.78	107.73	119.83	50.59
Merged-chr4-120053473-5	chr4	120053026	120054026	+	881.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-107680.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	91.53	86.63	66.6	167.33	131.56	116.55	70.76	82.24	48.09
Merged-chr2-124909954-3	chr2	124909440	124910440	+	881.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158187.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	10.3	11.52	16.65	16.19	14.93	24.11	12.67	18.13	11.24
Merged-chr17-71301494-3	chr17	71301016	71302016	+	881.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	9495.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	109.26	103.22	97.12	91.76	67.18	102.08	92.94	88.88	59.33
Merged-chr18-31701394-2	chr18	31700884	31701884	+	881.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172965, intron 16 of 20)	RMER3D-int|LTR|ERVK	-58440.0	NM_153515	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	8.01	5.99	3.7	5.4	5.13	1.61	4.22	4.42	3.75
Merged-chr17-34364037-3	chr17	34363554	34364554	+	881.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 6 of 8)	Lx8|LINE|L1	9232.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	125.28	83.4	70.3	33.74	23.79	17.68	76.05	113.19	57.46
Merged-chr18-26711654-3	chr18	26711138	26712138	+	881.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-957481.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.72	4.61	9.25	5.4	3.27	5.63	3.17	4.42	11.24
Merged-chr11-70499864-4	chr11	70499371	70500371	+	881.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5403.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	211.09	165.88	127.64	249.65	196.4	191.3	184.83	180.4	112.42
Merged-chr7-100965276-3	chr7	100964783	100965783	+	881.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183168)	promoter-TSS (NM_183168)	-917.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	28.6	29.49	24.05	39.13	27.06	32.15	23.24	22.99	16.86
Merged-chr19-8982894-3	chr19	8982438	8983438	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6346.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	26.89	18.89	7.4	37.78	16.79	22.51	14.79	11.94	26.23
Merged-chrX-147479104-1	chrX	147478604	147479604	+	881.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356369, intron 18 of 18)	RMER16_Mm|LTR|ERVK	-49912.0	NM_008356	16165.0	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	0.0	0.46	0.0	2.02	3.27	3.22	1.06	0.0	1.25
Merged-chr17-35825748-1	chr17	35825248	35826248	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008027, exon 8 of 13)	exon (NM_008027, exon 8 of 13)	2391.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	4.0	3.23	1.85	0.67	3.73	4.02	2.11	2.21	5.62
Merged-chr3-127895144-3	chr3	127894631	127895631	+	881.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1192.0	NM_027482	70617.0	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	36.04	36.86	16.65	33.06	21.93	24.11	42.25	54.39	20.61
Merged-chr10-62602844-2	chr10	62602338	62603338	+	881.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019553)	promoter-TSS (NM_019553)	-540.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	118.99	111.51	101.74	113.35	135.29	127.8	140.47	160.95	109.29
Merged-chr2-113396120-2	chr2	113395620	113396620	+	881.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-44944.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	31.46	32.72	25.9	29.69	24.72	37.78	12.67	6.19	5.0
Merged-chr5-108627217-3	chr5	108626727	108627727	+	881.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	2550.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	18.31	36.4	24.97	24.29	24.72	32.96	28.52	26.09	18.11
Merged-chr5-99247566-3	chr5	99247045	99248045	+	881.634888	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	5382.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	162.46	191.23	112.84	176.78	139.49	161.56	180.61	214.45	93.68
Merged-chr5-130253356-3	chr5	130252838	130253838	+	881.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 2 of 4)	intron (NM_023248, intron 2 of 4)	2192.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	18.88	17.97	12.95	6.75	7.46	4.82	15.84	9.29	16.86
Merged-chr18-77805685-3	chr18	77805182	77806182	+	881.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	Tigger7|DNA|TcMar-Tigger	-9292.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	52.63	37.32	53.65	40.48	25.66	16.08	26.4	41.56	39.35
Merged-chr1-55513056-3	chr1	55512535	55513535	+	881.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	107089.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	14.3	7.37	9.25	6.75	2.8	8.04	14.79	3.1	11.24
Merged-chr1-39784834-3	chr1	39784258	39785258	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20574.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	10.3	7.37	9.25	20.92	12.13	6.43	14.79	8.4	5.0
Merged-chr16-45090241-3	chr16	45089759	45090759	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3752.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	39.47	58.06	41.62	51.28	47.12	58.68	47.53	51.29	16.24
Merged-chr7-144940375-3	chr7	144939881	144940881	+	881.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007631)	promoter-TSS (NM_007631)	-456.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	57.21	35.48	24.05	64.1	34.99	35.37	91.89	76.05	39.97
Merged-chr8-4404430-1	chr8	4403930	4404930	+	881.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	54842.0	NM_009138	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	4.58	1.84	0.92	4.72	1.87	0.0	2.11	3.1	5.0
Merged-chr13-28952908-5	chr13	28952311	28953311	+	881.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009238, exon 1 of 1)	exon (NM_009238, exon 1 of 1)	888.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	21.17	11.06	16.65	38.46	20.99	11.25	6.34	1.77	1.87
Merged-chr11-63948602-2	chr11	63948095	63949095	+	881.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15631.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	5.72	3.69	1.85	8.77	4.67	15.27	8.45	13.71	12.49
Merged-chr11-86840098-2	chr11	86839567	86840567	+	881.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32407.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	7.44	1.84	1.85	16.87	7.93	6.43	15.84	7.07	9.99
Merged-chr5-118650940-3	chr5	118650457	118651457	+	881.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	90238.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.15	8.29	22.2	8.1	5.6	3.22	5.28	2.65	6.25
Merged-chr10-96163956-3	chr10	96163439	96164439	+	881.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62268.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	46.34	70.5	62.9	58.7	62.98	53.85	73.93	150.78	128.03
Merged-chr13-67421383-3	chr13	67420883	67421883	+	881.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177811)	promoter-TSS (NM_177811)	35.0	NM_177811	328274.0	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	42.9	41.47	22.2	47.23	43.85	53.05	6.34	3.54	5.0
Merged-chr15-64092738-3	chr15	64092238	64093238	+	881.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 27 of 28)	intron (NM_001276461, intron 27 of 28)	-32290.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	21.17	29.49	35.15	45.21	19.13	33.76	22.18	15.48	16.86
Merged-chr4-152086790-3	chr4	152086301	152087301	+	881.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104381)	promoter-TSS (NR_104381)	-62.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	14.87	7.37	13.87	8.77	7.46	12.86	8.45	3.1	6.87
Merged-chr4-132946628-3	chr4	132946126	132947126	+	881.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-24075.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	326.07	238.23	216.44	250.99	230.92	201.75	250.32	251.15	124.91
Merged-chr3-106497081-1	chr3	106496581	106497581	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	11041.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	16.02	39.17	23.12	23.62	27.99	40.19	26.4	19.46	38.72
Merged-chr1-60652693-3	chr1	60652246	60653246	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85981.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	58.92	57.14	49.02	67.47	49.92	76.36	69.71	83.13	47.46
Merged-chr4-36013035-1	chr4	36012535	36013535	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	intron (NM_001166000, intron 7 of 8)	-167831.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	9.72	9.22	5.55	14.17	7.0	8.04	13.73	8.84	2.5
Merged-chr15-50761754-2	chr15	50761245	50762245	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	127304.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	9.72	11.98	5.55	15.52	10.73	6.43	28.52	28.3	12.49
Merged-chr4-133805286-4	chr4	133804818	133805818	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-51707.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	351.24	316.1	191.47	339.38	275.71	223.45	289.39	368.33	150.51
Merged-chr16-49781817-3	chr16	49781327	49782327	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73827.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	14.87	11.06	12.02	20.24	7.93	13.66	15.84	11.05	8.12
Merged-chr7-63933986-3	chr7	63933484	63934484	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	4931.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	25.74	34.1	14.8	18.89	16.33	37.78	30.63	22.99	36.85
Merged-chr6-87732547-1	chr6	87732047	87733047	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159697, intron 1 of 7)	intron (NM_001159697, intron 1 of 7)	1678.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	6.29	1.84	3.7	10.12	3.27	4.02	7.39	1.77	1.25
Merged-chr12-70232086-2	chr12	70231573	70232573	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045174, exon 2 of 5)	non-coding (NR_045174, exon 2 of 5)	4232.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	8.01	11.52	12.95	10.8	15.86	20.9	34.85	23.88	18.11
Merged-chr3-126831588-1	chr3	126831088	126832088	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 14 of 18)	intron (NM_001025438, intron 14 of 18)	111798.0	NM_001034168	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.29	3.69	1.85	4.72	4.67	8.04	5.28	5.31	7.49
Merged-chr8-128363449-2	chr8	128362943	128363943	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358959, intron 2 of 16)	intron (NM_001358959, intron 2 of 16)	4202.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	6.29	6.91	3.7	2.7	2.8	0.0	4.22	3.1	0.0
Merged-chr8-35683722-2	chr8	35683227	35684227	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-94707.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	12.01	7.37	22.2	16.87	12.13	12.86	9.51	3.1	2.5
Merged-chr8-115539775-3	chr8	115539279	115540279	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	167115.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	10.87	12.44	3.7	8.77	4.67	3.22	4.22	2.21	1.87
Merged-chr12-71836168-2	chr12	71835662	71836662	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	5094.0	NM_172464	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.72	5.99	3.7	10.8	5.6	6.43	7.39	1.33	6.87
Merged-chr1-71100290-2	chr1	71099741	71100741	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	intron (NM_007525, intron 1 of 10)	2731.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	13.16	23.96	13.87	14.17	16.79	20.09	21.12	19.01	31.23
Merged-chr15-59525204-3	chr15	59524635	59525635	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-123519.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	55.49	52.53	29.6	48.58	29.86	31.35	48.58	29.18	7.49
Merged-chr6-145801067-1	chr6	145800567	145801567	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7316.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	5.15	10.14	5.55	29.69	15.86	6.43	6.34	7.07	5.0
Merged-chr3-75835751-3	chr3	75835254	75836254	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121195.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	5.72	2.76	5.55	3.37	5.13	6.43	1.06	4.86	3.75
Merged-chr14-122603351-1	chr14	122602851	122603851	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	69023.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	13.73	5.99	4.62	10.12	2.8	6.43	6.34	6.19	2.5
Merged-chr8-108854668-1	chr8	108854168	108855168	+	881.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-82192.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	20.02	2.3	0.0	30.36	14.93	11.25	9.51	6.19	7.49
Merged-chr8-33600207-6	chr8	33599718	33600718	+	881.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	CpG	597.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	70.36	75.57	101.74	66.8	66.71	116.55	124.63	89.76	77.44
Merged-chr10-67566360-3	chr10	67565846	67566846	+	881.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3662.0	NR_155445	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	8.01	10.14	5.55	10.8	5.13	1.61	11.62	4.86	4.37
Merged-chr6-83906861-3	chr6	83906363	83907363	+	881.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-7490.0	NM_001166371	18139.0	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	11.44	5.99	10.17	5.4	6.06	8.04	3.17	5.75	3.75
Merged-chr14-109289042-3	chr14	109288546	109289546	+	881.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-374807.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	3.43	1.84	1.85	8.1	2.33	10.45	7.39	4.86	1.25
Merged-chr14-13361396-3	chr14	13360890	13361890	+	881.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	76610.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	9.72	11.98	16.65	74.22	73.71	65.91	42.25	49.52	30.6
Merged-chr5-114175798-3	chr5	114175315	114176315	+	881.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133904, intron 1 of 51)	intron (NM_133904, intron 1 of 51)	10297.0	NM_133904	100705.0	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	8.58	10.14	7.4	34.41	27.52	57.07	3.17	0.44	1.25
Merged-chr18-68189958-3	chr18	68189455	68190455	+	881.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-37991.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	6.86	6.45	7.4	6.75	8.4	1.61	6.34	10.17	1.25
Merged-chr8-92856477-3	chr8	92855975	92856975	+	881.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	1142.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	69.22	82.48	106.37	74.89	55.98	96.45	129.91	149.89	96.8
Merged-chr3-67568423-3	chr3	67567913	67568913	+	881.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14355.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	5.72	4.61	7.4	2.7	5.13	1.61	6.34	1.33	0.0
Merged-chr8-11016340-3	chr8	11015854	11016854	+	881.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7924.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	37.76	31.79	9.25	67.47	74.64	48.23	13.73	27.41	7.49
Merged-chr2-167388608-3	chr2	167388097	167389097	+	881.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33113.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	18.31	14.75	7.4	14.17	5.6	10.45	28.52	10.17	7.49
Merged-chr16-91056225-3	chr16	91055714	91056714	+	881.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028905, exon 3 of 3)	exon (NM_028905, exon 3 of 3)	-11835.0	NR_152264	67367.0	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	25.17	11.06	5.55	18.89	7.46	1.61	28.52	15.92	5.0
Merged-chr8-94602445-2	chr8	94601935	94602935	+	881.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028221)	promoter-TSS (NM_028221)	494.0	NM_026274	67610.0	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	167.04	164.96	191.47	144.39	166.08	158.35	230.25	216.22	148.01
Merged-chr17-6960955-3	chr17	6960461	6961461	+	881.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147155, intron 1 of 3)	CpG	195.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	50.91	34.56	36.07	73.54	25.19	17.68	111.96	73.84	46.22
Merged-chr6-136499435-1	chr6	136498935	136499935	+	881.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19416.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	3.43	3.23	1.85	4.72	2.33	4.82	14.79	7.96	4.37
Merged-chr7-125620264-3	chr7	125619749	125620749	+	881.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021887, intron 1 of 8)	MTD|LTR|ERVL-MaLR	16820.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	26.89	19.81	24.97	12.14	13.06	31.35	17.96	23.88	22.48
Merged-chr4-11022990-3	chr4	11022486	11023486	+	881.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15367.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	10.3	11.98	8.32	4.72	10.26	18.49	7.39	15.03	19.98
Merged-chr15-90667040-3	chr15	90666522	90667522	+	881.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	12366.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	8.58	5.07	1.85	20.24	18.19	4.82	12.67	4.86	5.0
Merged-chr6-134743841-2	chr6	134743337	134744337	+	881.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 3 of 6)	intron (NM_130447, intron 3 of 6)	-48523.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	80.66	82.48	37.92	86.36	37.79	46.62	106.67	77.38	40.59
Merged-chrX-12158552-3	chrX	12158050	12159050	+	881.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	1796.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	64.64	65.43	50.87	70.85	58.31	65.91	48.58	58.37	29.98
Merged-chr7-125393824-3	chr7	125393323	125394323	+	881.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	24962.0	NM_001145759	75861.0	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	6.29	2.3	7.4	3.37	3.73	5.63	3.17	4.86	6.25
Merged-chr6-17463761-4	chr6	17463222	17464222	+	881.263916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008591)	promoter-TSS (NM_008591)	-235.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	12.59	4.61	9.25	9.45	6.06	0.0	5.28	0.44	6.25
Merged-chr10-40108150-2	chr10	40107657	40108657	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	34097.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	6.29	7.83	8.32	13.49	7.46	9.65	12.67	10.61	14.36
Merged-chr14-93199938-1	chr14	93199438	93200438	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271800, intron 3 of 3)	MIR|SINE|MIR	690731.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.57	1.84	0.0	5.4	7.46	1.61	5.28	4.42	2.5
Merged-chr13-30949399-3	chr13	30948902	30949902	+	881.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360093, intron 1 of 28)	intron (NM_001360093, intron 1 of 28)	896.0	NM_001360093	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	6.29	3.69	1.85	5.4	0.93	1.61	5.28	4.42	1.25
Merged-chr4-102987062-2	chr4	102986544	102987544	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163767, intron 1 of 4)	intron (NM_001163767, intron 1 of 4)	665.0	NM_026100	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	5.72	5.07	0.92	4.72	2.8	3.22	3.17	3.98	2.5
Merged-chr12-69417838-1	chr12	69417338	69418338	+	881.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45688.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	6.29	5.53	5.55	1.35	6.06	9.65	7.39	3.1	3.75
Merged-chr15-97786198-3	chr15	97785714	97786714	+	881.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	1849.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	163.04	182.93	174.82	221.31	205.26	213.81	183.78	225.95	102.42
Merged-chr5-114131656-3	chr5	114131132	114132132	+	881.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040691, intron 2 of 6)	CpG	476.0	NM_011677	22256.0	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	95.53	94.0	49.95	155.86	132.95	98.06	146.81	141.94	43.72
Merged-chrX-106189484-3	chrX	106188995	106189995	+	881.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	2395.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	30.89	32.72	22.2	30.36	25.19	29.74	42.25	40.68	21.86
Merged-chr9-40804001-3	chr9	40803487	40804487	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031165, intron 6 of 8)	intron (NM_031165, intron 6 of 8)	2714.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	51.48	48.38	47.17	40.48	27.99	33.76	90.83	73.84	51.84
Merged-chr10-99619637-3	chr10	99619139	99620139	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	10468.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	8.01	5.07	0.0	5.4	3.27	4.82	3.17	0.0	3.75
Merged-chr9-105519631-1	chr9	105519131	105520131	+	881.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	intron (NM_001253831, intron 1 of 26)	1626.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	1.14	3.23	0.92	0.67	4.67	4.82	4.22	9.29	6.87
Merged-chr17-71662818-3	chr17	71662317	71663317	+	881.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10444.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	8.01	7.83	0.0	7.42	4.2	1.61	9.51	3.1	5.62
Merged-chr9-114870179-1	chr9	114869679	114870679	+	881.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-26027.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	8.58	9.68	18.5	8.77	7.46	10.45	6.34	3.1	8.74
Merged-chr17-8508486-1	chr17	8507986	8508986	+	881.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18315.0	NM_001290707	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	3.43	1.38	12.95	5.4	3.73	4.82	1.06	0.88	5.0
Merged-chr3-107274028-3	chr3	107273536	107274536	+	881.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4822.0	NM_026774	68576.0	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	5.15	4.61	3.7	1.35	0.93	1.61	2.11	2.65	2.5
Merged-chr6-38320773-2	chr6	38320270	38321270	+	881.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 7 of 8)	RLTR45|LTR|ERVK	-21511.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	17.16	8.75	5.55	13.49	7.46	12.06	10.56	5.75	6.25
Merged-chr11-62103648-3	chr11	62103149	62104149	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029936, intron 1 of 12)	MLT1G3|LTR|ERVL-MaLR	26625.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	16.59	5.53	7.4	14.17	11.2	11.25	6.34	4.86	8.74
Merged-chr7-17002547-3	chr7	17002068	17003068	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7980.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	9.15	7.83	7.4	6.75	6.53	6.43	2.11	3.98	6.87
Merged-chr11-73176518-3	chr11	73176030	73177030	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029564)	promoter-TSS (NM_029564)	478.0	NM_001168470	66048.0	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	192.21	146.07	131.34	151.81	192.67	148.7	153.15	160.95	84.31
Merged-chr5-134456810-3	chr5	134456307	134457307	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001244936)	promoter-TSS (NM_001244936)	-91.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	29.17	12.9	23.12	51.28	20.99	42.6	59.15	16.8	16.86
Merged-chr16-77084878-3	chr16	77084374	77085374	+	881.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 17 of 23)	intron (NM_013918, intron 17 of 23)	70805.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	37.76	38.71	18.5	33.06	28.46	25.72	41.19	38.47	34.35
Merged-chr11-86610401-2	chr11	86609902	86610902	+	881.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 8 of 11)	RSINE1|SINE|B4	-26244.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	17.73	14.28	19.42	47.23	39.19	45.82	52.81	41.56	39.35
Merged-chr19-8843128-2	chr19	8842628	8843628	+	881.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008144, intron 3 of 10)	intron (NM_008144, intron 3 of 10)	2625.0	NM_001290823	14705.0	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	6.86	7.83	9.25	9.45	13.06	16.08	7.39	4.42	7.49
Merged-chr4-34765908-3	chr4	34765389	34766389	+	881.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-9630.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	6.29	4.15	5.55	3.37	6.06	9.65	12.67	13.71	10.62
Merged-chr15-27884602-3	chr15	27884086	27885086	+	881.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 9 of 56)	intron (NM_001081302, intron 9 of 56)	141262.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	2.29	4.61	5.55	6.07	0.93	5.63	4.22	2.65	7.49
Merged-chr15-101453474-3	chr15	101452950	101453950	+	881.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025487, intron 4 of 4)	intron (NM_025487, intron 4 of 4)	5705.0	NM_025487	66322.0	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	9.15	7.37	0.0	2.7	3.73	6.43	1.06	3.54	5.0
Merged-chr17-65854240-3	chr17	65853752	65854752	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198949, intron 6 of 9)	intron (NM_001198949, intron 6 of 9)	30671.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	37.18	50.69	41.62	31.04	45.25	56.27	40.14	34.05	23.11
Merged-chr6-120795710-3	chr6	120795218	120796218	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007510, exon 9 of 9)	exon (NM_007510, exon 9 of 9)	21950.0	NM_001081048	71803.0	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	9.72	11.06	27.75	7.42	10.73	18.49	15.84	8.4	20.61
Merged-chr4-41310803-3	chr4	41310306	41311306	+	881.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	RSINE1|SINE|B4	4095.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	100.68	93.54	68.45	105.26	70.44	102.88	50.7	96.39	64.33
Merged-chr13-119809753-3	chr13	119809267	119810267	+	881.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18645.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	58.35	85.71	57.35	78.94	55.51	77.97	121.46	98.16	64.95
Merged-chr7-46846349-3	chr7	46845853	46846853	+	881.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136069)	promoter-TSS (NM_001136069)	549.0	NR_102727	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	203.65	241.45	204.41	192.29	257.98	224.26	265.1	286.97	168.0
Merged-chr8-80919273-3	chr8	80918769	80919769	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38750.0	NM_001301298	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	6.86	3.23	11.1	16.87	7.46	28.13	7.39	2.21	8.12
Merged-chr4-59569754-3	chr4	59569244	59570244	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11819.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	10.3	13.82	5.55	15.52	6.53	14.47	8.45	10.61	2.5
Merged-chr1-185350525-1	chr1	185350025	185351025	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-12519.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	16.02	15.67	14.8	25.64	24.26	17.68	2.11	0.88	0.0
Merged-chr8-26768348-1	chr8	26767848	26768848	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56075.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	6.29	4.15	8.32	4.72	0.93	3.22	1.06	4.86	6.25
Merged-chr5-90905722-3	chr5	90905236	90906236	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009140, exon 4 of 4)	3' UTR (NM_009140, exon 4 of 4)	1837.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	5.15	7.37	7.4	5.4	2.8	6.43	4.22	3.98	8.74
Merged-chr4-105704468-1	chr4	105703968	105704968	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-536745.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	95.53	110.13	63.82	97.83	104.96	80.38	91.89	102.58	63.7
Merged-chr10-24493894-2	chr10	24493395	24494395	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101547.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	6.29	11.98	1.85	10.12	7.93	6.43	17.96	20.78	10.62
Merged-chr5-5860958-1	chr5	5860458	5861458	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111641.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	1.14	3.69	5.55	2.02	2.8	4.02	3.17	3.54	5.0
Merged-chr7-128225303-1	chr7	128224803	128225803	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-12054.0	NM_146205	233912.0	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	26.31	19.35	8.32	53.98	35.92	13.66	34.85	29.18	9.37
Merged-chr12-55831250-1	chr12	55830750	55831750	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5116.0	NM_001037756	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	3.43	1.84	1.85	7.42	1.87	0.0	2.11	5.31	0.62
Merged-chr13-51839799-1	chr13	51839299	51840299	+	881.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6876.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	13.73	8.29	12.02	18.22	19.13	8.84	11.62	7.96	3.75
Merged-chr4-66841699-1	chr4	66841199	66842199	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021297, exon 3 of 3)	3' UTR (NM_021297, exon 3 of 3)	14148.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	23.45	40.55	43.47	37.11	31.72	38.58	19.01	23.43	28.73
Merged-chr1-118472725-3	chr1	118472228	118473228	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 8 of 39)	intron (NM_001359330, intron 8 of 39)	-13463.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	13.73	11.52	14.8	31.04	28.92	19.29	23.24	23.88	17.49
Merged-chr12-100211219-2	chr12	100210726	100211726	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11082.0	NM_001313934	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	7.44	9.22	3.7	11.47	2.8	14.47	5.28	2.65	5.62
Merged-chr3-51475936-3	chr3	51475432	51476432	+	881.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053089)	TTS (NM_053089)	-8034.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	62.35	60.36	69.37	35.76	40.59	28.13	52.81	73.84	40.59
Merged-chr12-113152628-1	chr12	113152128	113153128	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007763, intron 1 of 4)	intron (NM_007763, intron 1 of 4)	616.0	NM_007763	12925.0	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	42.33	35.02	33.3	49.25	36.39	65.91	25.35	32.72	25.61
Merged-chr16-15569394-1	chr16	15568894	15569894	+	881.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159351, intron 2 of 2)	MTD|LTR|ERVL-MaLR	25124.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	16.02	16.13	12.02	23.62	14.0	24.11	15.84	4.86	5.62
Merged-chr4-95054664-3	chr4	95054172	95055172	+	880.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2450.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	22.31	35.02	18.5	23.62	20.99	46.62	36.97	35.37	43.09
Merged-chr10-117731446-3	chr10	117730959	117731959	+	880.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14899.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	9.72	4.61	9.25	7.42	5.13	0.0	9.51	9.29	4.37
Merged-chr12-3873297-5	chr12	3872890	3873890	+	880.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271753, exon 6 of 23)	exon (NM_001271753, exon 6 of 23)	-11146.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	174.48	172.79	141.52	131.57	132.95	157.54	179.55	179.08	136.77
Merged-chr13-51202931-2	chr13	51202424	51203424	+	880.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_132443, exon 1 of 1)	non-coding (NR_132443, exon 1 of 1)	142.0	NR_132443	667728.0		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	43.48	38.25	1.85	41.83	24.26	0.0	2.11	1.77	1.87
Merged-chr4-133662445-2	chr4	133661900	133662900	+	880.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001145956, exon 3 of 3)	3' UTR (NM_001145956, exon 3 of 3)	10247.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	126.42	107.36	115.62	124.82	47.12	94.85	2.11	5.31	7.49
Merged-chr17-23786165-3	chr17	23785678	23786678	+	880.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029798)	promoter-TSS (NM_029798)	38.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	18.31	11.52	5.55	26.99	16.33	12.06	7.39	12.82	0.0
Merged-chr1-136570747-3	chr1	136570255	136571255	+	880.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54146.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	94.39	105.52	79.55	99.86	80.24	91.63	177.44	184.83	79.94
Merged-chr17-35836391-3	chr17	35835898	35836898	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 2 of 3)	intron (NM_011655, intron 2 of 3)	1903.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	19.45	21.2	18.5	29.01	18.19	19.29	19.01	15.03	26.85
Merged-chr5-142222345-1	chr5	142221845	142222845	+	880.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-179152.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	2.86	3.69	0.92	2.02	0.0	5.63	13.73	10.61	22.48
Merged-chr12-100531068-3	chr12	100530555	100531555	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10233.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	13.16	5.53	12.95	8.1	7.93	4.02	8.45	7.07	8.74
Merged-chr1-136635890-3	chr1	136635369	136636369	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10968.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	58.92	77.41	54.57	67.47	41.05	51.44	71.82	81.36	39.97
Merged-chr12-4593338-8	chr12	4592790	4593790	+	880.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	CpG	282.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	283.74	284.76	317.26	340.73	327.02	259.62	385.51	292.27	153.63
Merged-chr13-69392353-2	chr13	69391826	69392826	+	880.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141538.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	9.15	4.15	8.32	16.87	11.66	7.23	40.14	46.43	20.61
Merged-chr2-30783560-3	chr2	30783044	30784044	+	880.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	18193.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	40.62	30.87	28.67	51.28	55.98	58.68	69.71	43.77	47.46
Merged-chr3-139025267-3	chr3	139024770	139025770	+	880.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	49931.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	28.6	42.85	13.87	21.59	29.39	29.74	17.96	31.39	18.74
Merged-chr8-10172482-2	chr8	10171970	10172970	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	18559.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	5.15	2.76	0.0	4.72	3.27	4.82	0.0	6.19	2.5
Merged-chr16-94546385-2	chr16	94545895	94546895	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19766.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	29.75	21.2	15.72	53.3	37.79	18.49	60.2	70.3	33.72
Merged-chr10-24090534-1	chr10	24090034	24091034	+	880.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001010837)	TTS (NM_001010837)	1760.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	4.58	1.38	12.02	2.02	7.93	4.82	1.06	7.96	4.37
Merged-chr15-28405363-3	chr15	28404870	28405870	+	880.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 61 of 78)	intron (NM_133365, intron 61 of 78)	201604.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	22.31	32.72	16.65	35.76	29.39	33.76	34.85	26.53	30.6
Merged-chr10-67049447-3	chr10	67048948	67049948	+	880.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44373.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	23.45	23.04	22.2	27.66	11.66	19.29	23.24	19.01	23.11
Merged-chr10-56824351-2	chr10	56823887	56824887	+	880.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	392406.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	14.87	15.67	18.5	14.84	15.86	16.08	5.28	8.4	11.24
Merged-chr7-90137024-3	chr7	90136530	90137530	+	880.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	B2_Mm1t|SINE|B2	6817.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	58.35	64.05	37.0	60.72	69.04	59.48	66.54	55.71	33.72
Merged-chr7-55859669-3	chr7	55859179	55860179	+	880.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164661, intron 2 of 31)	intron (NM_001164661, intron 2 of 31)	17608.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	20.02	12.9	10.17	18.89	5.6	13.66	19.01	8.84	29.35
Merged-chr16-87594266-1	chr16	87593766	87594766	+	880.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144854, exon 5 of 5)	exon (NM_144854, exon 5 of 5)	40936.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	2.29	2.3	3.7	5.4	5.6	1.61	1.06	2.65	3.12
Merged-chr1-177795502-2	chr1	177795017	177796017	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007422, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	992.0	NM_007422	11566.0	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	33.75	39.17	26.82	31.71	44.78	28.94	59.15	39.35	23.73
Merged-chr18-11687015-2	chr18	11686512	11687512	+	880.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	29663.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	52.06	71.42	43.47	5.4	9.33	8.04	64.43	66.77	60.58
Merged-chr15-90645080-2	chr15	90644569	90645569	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 3 of 3)	intron (NM_001033851, intron 3 of 3)	34319.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.0	10.14	8.32	16.19	27.06	18.49	12.67	5.75	2.5
Merged-chr8-111182259-2	chr8	111181762	111182762	+	880.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 9 of 25)	intron (NM_009149, intron 9 of 25)	-36764.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	25.17	17.51	10.17	47.23	27.99	30.54	30.63	26.97	16.86
Merged-chr6-134927232-4	chr6	134926752	134927752	+	880.635376	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1840.0	NR_037956	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	60.64	60.82	45.32	40.48	27.06	50.64	71.82	76.94	62.45
Merged-chr5-42977316-2	chr5	42976801	42977801	+	880.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-256162.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.58	3.23	3.7	4.72	2.33	1.61	2.11	5.31	3.75
Merged-chr5-122422347-5	chr5	122421853	122422853	+	880.6166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019805)	promoter-TSS (NM_019805)	-91.0	NM_019805	56317.0	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	81.23	69.12	55.5	82.99	83.97	94.85	91.89	80.03	40.59
Merged-chr2-155472910-3	chr2	155472400	155473400	+	880.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32117.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	85.81	41.93	57.35	58.03	45.25	97.26	66.54	64.11	47.46
Merged-chr11-103032943-3	chr11	103032438	103033438	+	880.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4395.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	62.93	42.39	39.77	86.36	52.25	63.5	80.27	45.1	39.97
Merged-chr9-121320636-3	chr9	121320128	121321128	+	880.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	23126.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	27.46	30.87	38.85	39.81	27.99	45.82	31.69	21.22	18.74
Merged-chr11-102318132-5	chr11	102317557	102318557	+	880.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-770.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	130.43	130.86	166.49	128.2	99.37	131.82	145.75	96.39	111.79
Merged-chr9-21463966-2	chr9	21463472	21464472	+	880.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 2 of 19)	B4A|SINE|B4	32592.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	36.04	35.02	36.07	52.63	54.11	59.48	54.92	45.1	31.23
Merged-chr12-26444210-2	chr12	26443687	26444687	+	880.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021384, exon 6 of 6)	3' UTR (NM_021384, exon 6 of 6)	12265.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	37.18	33.64	39.77	25.64	20.99	31.35	20.07	16.8	12.49
Merged-chr2-166676647-3	chr2	166676153	166677153	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	37179.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	40.04	19.81	7.4	56.0	22.39	6.43	38.02	36.26	12.49
Merged-chr6-145244454-3	chr6	145243952	145244952	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	5779.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	57.78	82.48	51.8	82.32	60.65	37.78	68.65	78.71	43.09
Merged-chr2-124579487-3	chr2	124578994	124579994	+	880.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-30802.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	22.88	10.6	16.65	13.49	10.26	14.47	14.79	7.96	6.87
Merged-chr5-87143301-2	chr5	87142810	87143810	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-2970.0	NM_009467	22238.0	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	4.58	2.3	0.0	2.7	0.93	2.41	3.17	2.65	1.25
Merged-chr6-116141026-3	chr6	116140524	116141524	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	52350.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	40.62	49.76	16.65	27.66	17.73	9.65	14.79	17.24	16.86
Merged-chr2-103832138-3	chr2	103831628	103832628	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-21506.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	16.02	8.29	12.02	10.12	7.0	21.7	7.39	6.19	18.74
Merged-chr11-94348137-2	chr11	94347667	94348667	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029600, intron 29 of 30)	intron (NM_029600, intron 29 of 30)	20166.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	9.15	4.61	1.85	29.69	14.0	28.94	22.18	18.57	16.24
Merged-chr7-141488380-1	chr7	141487880	141488880	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252588, intron 2 of 7)	intron (NM_001252588, intron 2 of 7)	12000.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	5.72	5.99	5.55	10.12	3.73	6.43	7.39	5.31	8.74
Merged-chr4-119663637-1	chr4	119663137	119664137	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4692.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	2.29	2.3	11.1	10.8	7.0	12.06	3.17	1.77	0.62
Merged-chr8-90869501-3	chr8	90869008	90870008	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	40673.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	68.65	57.14	72.15	103.91	100.3	89.22	83.44	63.67	49.96
Merged-chr10-84109894-3	chr10	84109407	84110407	+	880.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9210.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	6.86	7.37	9.25	9.45	10.73	4.02	9.51	2.21	5.0
Merged-chr9-13581516-1	chr9	13581016	13582016	+	880.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-38473.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	26.89	28.11	22.2	27.66	25.19	14.47	17.96	15.03	10.62
Merged-chr11-117978045-3	chr11	117977573	117978573	+	880.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8707.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	3.43	2.3	5.55	3.37	2.8	6.43	2.11	3.1	3.75
Merged-chr15-25364226-3	chr15	25363743	25364743	+	880.444458	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49521.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	47.48	17.05	29.6	97.83	35.45	43.4	68.65	28.3	28.73
Merged-chr12-40470551-3	chr12	40470055	40471055	+	880.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	24502.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	79.52	86.17	44.4	50.6	57.85	25.72	95.06	112.31	53.71
Merged-chr17-27591975-2	chr17	27591493	27592493	+	880.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	A-rich|Low_complexity|Low_complexity	-26266.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	169.9	188.0	135.97	6.75	1.4	3.22	138.36	184.38	76.19
Merged-chr9-55395857-3	chr9	55395362	55396362	+	880.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	68949.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	1.72	2.76	3.7	7.42	0.93	3.22	2.11	2.21	1.25
Merged-chr12-119313179-3	chr12	119312671	119313671	+	880.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74895.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	32.04	30.41	25.9	22.94	37.79	19.29	46.47	51.29	36.22
Merged-chr2-78923114-3	chr2	78922633	78923633	+	880.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151457, intron 6 of 6)	intron (NR_151457, intron 6 of 6)	53455.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	10.3	10.6	9.25	14.17	11.66	3.22	10.56	10.17	4.37
Merged-chr6-34340684-3	chr6	34340171	34341171	+	880.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13475.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	22.88	15.21	11.1	20.92	17.73	18.49	20.07	22.99	20.61
Merged-chr7-140845030-3	chr7	140844463	140845463	+	880.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099742)	promoter-TSS (NM_001099742)	-602.0	NM_001099742	338417.0	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	8.01	0.46	1.85	2.7	0.47	0.0	2.11	0.0	6.25
Merged-chr9-104271884-3	chr9	104271365	104272365	+	880.377808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8935.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	42.9	55.29	49.02	55.33	50.85	77.16	74.99	80.03	68.07
Merged-chr7-140908810-3	chr7	140908318	140909318	+	880.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015583)	TTS (NR_015583)	2754.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	2.86	4.15	5.55	4.72	2.33	4.82	6.34	1.77	2.5
Merged-chr8-94772116-3	chr8	94771613	94772613	+	880.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009142)	promoter-TSS (NM_009142)	-67.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	1.14	2.3	0.0	5.4	1.87	0.8	1.06	0.44	1.25
Merged-chr4-149398441-2	chr4	149397949	149398949	+	880.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 2 of 26)	intron (NM_022022, intron 2 of 26)	28182.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	10.87	1.84	14.8	6.07	5.6	10.45	8.45	1.77	3.75
Merged-chr2-29130306-1	chr2	29129806	29130806	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198033, exon 4 of 26)	exon (NM_198033, exon 4 of 26)	5314.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	23.45	24.42	27.75	23.62	20.06	28.94	25.35	27.41	34.35
Merged-chr10-118596133-3	chr10	118595633	118596633	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39608.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	30.89	49.3	44.4	57.35	44.78	62.7	64.43	52.62	41.22
Merged-chr10-12035348-1	chr10	12034848	12035848	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	426124.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	2.29	2.76	3.7	3.37	3.27	2.41	2.11	2.65	3.75
Merged-chrX-105926470-3	chrX	105925939	105926939	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 1 of 34)	ORR1C2-int|LTR|ERVL-MaLR	2933.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	27.46	28.57	13.87	24.96	23.79	21.7	20.07	27.41	19.98
Merged-chr17-25813755-1	chr17	25813255	25814255	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164225, intron 1 of 5)	CpG	4670.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	2.86	1.84	0.0	2.02	1.87	1.61	2.11	0.88	1.25
Merged-chr3-116483495-1	chr3	116482995	116483995	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24680.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	24.03	36.4	26.82	21.59	13.53	27.33	29.57	28.3	21.86
Merged-chr15-25832755-2	chr15	25832250	25833250	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10548.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	4.0	3.23	0.0	6.75	4.2	3.22	6.34	2.21	6.25
Merged-chr1-58723829-1	chr1	58723329	58724329	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	-6723.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	236.83	235.0	148.92	250.32	204.33	180.85	208.07	257.34	115.54
Merged-chr4-116556028-3	chr4	116555582	116556582	+	880.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177670)	promoter-TSS (NM_177670)	-139.0	NM_177670	230657.0	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	151.02	170.95	120.24	140.34	132.95	167.99	184.83	210.47	111.17
Merged-chr15-97833406-1	chr15	97832906	97833906	+	880.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-1639.0	NM_001204276	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.29	3.23	3.7	12.14	2.8	2.41	4.22	1.33	7.49
Merged-chr8-123280585-1	chr8	123280085	123281085	+	880.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 30 of 42)	RLTR17B_Mm|LTR|ERVK	-26363.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	9.72	5.07	11.1	3.37	3.73	3.22	55.98	57.92	47.46
Merged-chr13-58622835-1	chr13	58622335	58623335	+	880.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11958.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	1.72	4.15	1.85	5.4	4.2	0.0	5.28	1.33	1.25
Merged-chr11-20500715-2	chr11	20500234	20501234	+	880.2999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D1|LTR|ERVL	-42519.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	2.29	3.23	4.62	5.4	3.27	7.23	6.34	2.21	3.75
Merged-chr10-75151491-3	chr10	75150984	75151984	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 8 of 22)	intron (NM_001081412, intron 8 of 22)	-60589.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	1.72	2.3	0.0	0.0	2.33	0.0	2.11	1.33	0.0
Merged-chr6-65510470-3	chr6	65509952	65510952	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79946.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	3.43	5.53	0.92	2.7	3.27	0.0	3.17	5.31	2.5
Merged-chrX-106135677-3	chrX	106135201	106136201	+	880.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7574.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	253.42	247.44	171.12	196.34	210.86	176.83	193.28	230.81	118.66
Merged-chr4-132030244-3	chr4	132029724	132030724	+	880.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	18854.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	32.61	39.17	14.8	58.7	46.65	38.58	60.2	37.14	27.48
Merged-chr1-189973135-1	chr1	189972635	189973635	+	880.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50844.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	1.72	1.38	0.0	2.02	1.4	2.41	4.22	0.88	2.5
Merged-chr3-118044449-1	chr3	118043949	118044949	+	880.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175513.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	2.29	2.76	3.7	3.37	5.13	11.25	7.39	5.31	10.62
Merged-chr18-84849151-3	chr18	84848652	84849652	+	880.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-2186.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	58.92	65.43	40.7	90.41	83.51	69.13	40.14	61.02	35.6
Merged-chr11-72547400-3	chr11	72546898	72547898	+	880.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029932, intron 1 of 11)	intron (NM_029932, intron 1 of 11)	2848.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	11.44	7.37	0.92	8.1	5.13	4.02	6.34	3.1	6.25
Merged-chr8-85700867-3	chr8	85700393	85701393	+	880.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106189)	promoter-TSS (NR_106189)	-12.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	8.01	2.76	0.92	8.1	1.4	3.22	5.28	2.65	1.25
Merged-chr13-49326459-3	chr13	49325951	49326951	+	880.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15098.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	13.73	7.37	1.85	18.22	10.73	13.66	7.39	3.54	6.25
Merged-chr15-85653913-4	chr15	85653351	85654351	+	880.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49922.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	30.89	41.01	56.42	49.25	61.58	77.97	62.31	75.61	58.71
Merged-chr17-26101551-1	chr17	26101051	26102051	+	880.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6081.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	39.47	21.2	51.8	6.75	11.2	11.25	8.45	1.77	2.5
Merged-chr17-35837681-3	chr17	35837177	35838177	+	880.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011655, intron 1 of 3)	intron (NM_011655, intron 1 of 3)	624.0	NM_011655	22154.0	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	80.66	89.85	90.65	49.93	56.45	99.67	95.06	130.44	85.56
Merged-chr3-98033401-1	chr3	98032901	98033901	+	880.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	19863.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	48.05	26.73	12.02	45.88	29.39	33.76	21.12	22.11	21.23
Merged-chr13-95618543-3	chr13	95618042	95619042	+	880.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010169)	promoter-TSS (NM_010169)	-76.0	NM_010169	14062.0	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	5.15	1.84	0.92	2.02	4.67	3.22	6.34	4.42	4.37
Merged-chr1-131957927-2	chr1	131957432	131958432	+	880.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4983.0	NM_001177628	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	11.44	10.6	19.42	18.89	10.26	30.54	8.45	10.61	6.25
Merged-chr1-180390599-2	chr1	180390108	180391108	+	880.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60059.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	41.76	41.01	21.27	39.13	17.26	16.88	38.02	33.16	32.48
Merged-chr7-100946638-2	chr7	100946135	100947135	+	880.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	-14474.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	29.75	35.02	41.62	27.66	29.39	36.17	22.18	15.48	23.73
Merged-chr14-79535498-3	chr14	79535019	79536019	+	880.1277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	19845.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	87.52	91.7	72.15	75.57	66.71	59.48	81.33	96.39	60.58
Merged-chr11-8628929-3	chr11	8628454	8629454	+	880.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	35581.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	56.63	47.0	53.65	53.3	28.92	45.01	31.69	31.39	14.36
Merged-chr3-145964171-3	chr3	145963670	145964670	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23700.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	5.72	9.22	12.95	14.17	7.93	6.43	5.28	5.75	1.25
Merged-chr18-5320330-3	chr18	5319820	5320820	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	L1M4b|LINE|L1	14119.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	9.72	10.6	7.4	14.84	16.79	19.29	4.22	10.17	8.12
Merged-chr4-89123573-3	chr4	89123080	89124080	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4646.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	10.87	1.38	1.85	5.4	5.13	1.61	3.17	0.88	2.5
Merged-chr13-52268492-3	chr13	52267987	52268987	+	880.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171746.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	1.72	5.99	0.0	4.05	7.0	3.22	9.51	4.86	6.25
Merged-chr9-90275548-7	chr9	90275053	90276053	+	880.095215	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-4784.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	179.05	169.57	205.34	161.93	97.5	192.91	265.1	210.03	193.6
Merged-chr10-99199742-2	chr10	99199238	99200238	+	880.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63493.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	11.44	9.22	15.72	13.49	8.4	1.61	6.34	5.31	2.5
Merged-chr4-59596799-3	chr4	59596285	59597285	+	880.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	15222.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	56.63	46.54	36.07	30.36	20.53	39.39	70.76	56.6	31.23
Merged-chr6-89050771-3	chr6	89050274	89051274	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-45336.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	9.15	4.15	6.47	10.8	4.2	5.63	4.22	2.65	1.25
Merged-chr2-167057848-3	chr2	167057351	167058351	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 2 of 13)	intron (NM_001033196, intron 2 of 13)	-5083.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	107.55	115.66	82.32	160.58	124.56	106.9	173.21	220.2	74.32
Merged-chr11-119392226-3	chr11	119391733	119392733	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1761.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	121.85	129.48	96.2	136.29	117.09	163.17	152.09	232.58	127.4
Merged-chr6-86493592-3	chr6	86493084	86494084	+	880.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-5357.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	220.24	184.31	107.29	158.56	86.3	76.36	128.85	131.77	83.69
Merged-chr10-43123615-3	chr10	43123132	43124132	+	880.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175407, intron 4 of 6)	Lx6|LINE|L1	50898.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	16.02	11.98	14.8	14.17	25.66	12.06	11.62	17.69	13.74
Merged-chr5-38684572-4	chr5	38684055	38685055	+	880.0208130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081144, intron 1 of 3)	CpG	271.0	NM_001177902	100515.0	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	3.43	3.69	5.55	9.45	5.6	16.08	4.22	3.1	3.12
Merged-chr13-110943175-3	chr13	110942671	110943671	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39325.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	10.87	8.29	5.55	37.11	23.33	14.47	39.08	27.41	12.49
Merged-chr5-27791024-1	chr5	27790524	27791524	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018878, intron 1 of 20)	CpG	526.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	57.78	41.01	50.87	80.97	43.85	53.05	100.34	48.2	49.34
Merged-chr3-149290340-3	chr3	149289859	149290859	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15622.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.0	2.76	0.0	8.1	4.67	3.22	4.22	1.77	5.0
Merged-chr19-41773928-1	chr19	41773428	41774428	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 10 of 11)	intron (NM_027667, intron 10 of 11)	26967.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	112.12	93.54	68.45	99.86	73.24	87.61	246.09	249.38	120.53
Merged-chr10-23858236-1	chr10	23857736	23858736	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6774.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	9.51	4.42	5.0
Merged-chr18-17490455-1	chr18	17489955	17490955	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90535.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.0	7.37	0.0	9.45	12.13	3.22	4.22	6.63	0.0
Merged-chr1-135659230-1	chr1	135658730	135659730	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60833.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	2.29	5.53	9.25	87.71	74.64	72.34	28.52	22.55	13.74
Merged-chr3-109342198-2	chr3	109341697	109342697	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	1514.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	30.89	23.96	29.6	39.13	35.92	38.58	23.24	15.92	13.74
Merged-chr9-109875976-1	chr9	109875476	109876476	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007658, exon 1 of 15)	5' UTR (NM_007658, exon 1 of 15)	397.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	90.38	87.09	108.22	103.91	96.1	92.44	84.49	61.46	58.71
Merged-chr1-183553361-1	chr1	183552861	183553861	+	880.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134113.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	1.72	1.84	7.4	8.1	0.0	10.45	13.73	11.94	17.49
Merged-chr11-75534588-1	chr11	75534088	75535088	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	2476.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	131.0	117.5	108.22	107.95	86.3	114.94	113.01	161.39	64.95
Merged-chr16-10996721-3	chr16	10996201	10997201	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-3580.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	17.73	8.75	5.55	12.14	11.2	9.65	12.67	2.21	3.75
Merged-chr6-52491374-1	chr6	52490874	52491874	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1077.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	14.3	20.74	20.35	23.62	19.13	27.33	23.24	11.05	16.24
Merged-chr17-5293874-3	chr17	5293385	5294385	+	880.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	124882.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	11.44	6.45	5.55	6.75	5.6	3.22	9.51	4.86	7.49
Merged-chrX-163243051-1	chrX	163242551	163243551	+	880.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	109513.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	4.58	2.3	3.7	3.37	2.8	0.0	0.0	5.31	5.0
Merged-chr9-41951236-3	chr9	41950745	41951745	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125968.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	10.87	2.76	7.4	20.24	18.66	3.22	8.45	1.77	3.75
Merged-chr2-131430650-3	chr2	131430142	131431142	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61220.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	13.16	8.29	14.8	12.82	15.39	8.04	10.56	8.84	5.0
Merged-chr11-50841581-3	chr11	50841085	50842085	+	879.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290779)	promoter-TSS (NM_001290779)	-33.0	NM_173387	214779.0	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	6.86	7.37	7.4	11.47	3.73	4.82	2.11	0.0	2.5
Merged-chr13-28958627-3	chr13	28958144	28959144	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4945.0	NM_009238	20677.0	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	54.35	29.49	40.7	70.85	35.45	49.03	14.79	17.69	6.87
Merged-chr9-37347760-3	chr9	37347259	37348259	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081429, exon 2 of 16)	exon (NM_001081429, exon 2 of 16)	633.0	NM_001081429	245902.0	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	104.11	124.87	115.62	103.23	129.22	69.13	154.2	167.58	122.41
Merged-chr6-72349810-3	chr6	72349337	72350337	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	2520.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	54.35	39.63	42.55	44.53	40.12	72.34	49.64	52.18	47.46
Merged-chr5-29972972-3	chr5	29972470	29973470	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40144.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	13.73	24.88	15.72	10.12	7.93	5.63	16.9	21.22	9.37
Merged-chr2-166430117-3	chr2	166429629	166430629	+	879.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17322.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	6.29	5.53	7.4	11.47	4.67	6.43	6.34	3.98	1.25
Merged-chr4-133185424-3	chr4	133184942	133185942	+	879.877808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 3 of 8)	intron (NM_153423, intron 3 of 8)	-10213.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	34.9	21.66	22.2	35.09	19.13	24.11	35.91	28.3	15.61
Merged-chr2-157095394-4	chr2	157094871	157095871	+	879.867859	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177439, intron 5 of 5)	intron (NM_001177439, intron 5 of 5)	8316.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	41.76	15.21	31.45	20.92	12.6	20.9	31.69	22.11	14.36
Merged-chr3-126690834-3	chr3	126690334	126691334	+	879.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	93883.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	11.44	10.6	8.32	10.12	6.06	0.0	11.62	10.61	1.87
Merged-chr7-19669599-3	chr7	19669103	19670103	+	879.85553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4317.0	NM_001309795	11813.0	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	52.06	27.65	49.02	49.93	28.92	49.83	47.53	39.35	31.85
Merged-chr5-105694217-3	chr5	105693805	105694805	+	879.841675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	38.33	17.97	11.1	74.22	42.92	29.74	46.47	22.99	10.62
Merged-chr10-57603105-3	chr10	57602619	57603619	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28862.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.0	4.15	1.85	2.02	4.2	8.84	5.28	2.21	3.75
Merged-chr1-64197855-3	chr1	64197340	64198340	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76451.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	46.34	59.44	34.22	53.98	45.72	65.91	39.08	72.52	56.21
Merged-chr11-77371359-3	chr11	77370852	77371852	+	879.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	23072.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	91.53	107.82	53.65	89.74	57.38	72.34	85.55	115.41	56.21
Merged-chr11-98121915-3	chr11	98121393	98122393	+	879.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028149, intron 2 of 14)	intron (NM_028149, intron 2 of 14)	27723.0	NM_028149	72194.0	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	68.65	70.04	86.95	66.8	68.11	77.97	96.11	119.39	56.21
Merged-chr13-45101955-3	chr13	45101426	45102426	+	879.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99830.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	4.58	9.68	3.7	8.77	7.46	3.22	10.56	7.07	7.49
Merged-chr3-32398608-3	chr3	32398103	32399103	+	879.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32938.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	85.24	100.45	34.22	68.15	37.79	51.44	70.76	57.48	43.72
Merged-chr1-66650196-3	chr1	66649681	66650681	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175510, intron 47 of 64)	intron (NM_175510, intron 47 of 64)	-50650.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	10.3	13.36	14.8	6.75	7.0	8.04	2.11	9.73	5.0
Merged-chr8-105500063-3	chr8	105499565	105500565	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3163.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	42.33	69.12	69.37	65.45	78.37	33.76	77.1	73.4	46.84
Merged-chr13-58543359-3	chr13	58542883	58543883	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67494.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	18.88	9.22	18.5	24.29	17.26	14.47	30.63	27.41	7.49
Merged-chr6-72884953-3	chr6	72884450	72885450	+	879.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	MIRc|SINE|MIR	14342.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	20.02	13.36	11.1	23.62	10.73	24.11	15.84	12.38	6.25
Merged-chr3-27217203-2	chr3	27216679	27217679	+	879.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	34175.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	12.01	11.52	12.95	15.52	18.19	33.76	12.67	17.69	13.74
Merged-chr3-88651823-3	chr3	88651337	88652337	+	879.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_181817)	TTS (NM_181817)	1305.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	10.3	6.45	9.25	14.17	7.0	3.22	7.39	3.98	5.0
Merged-chr11-69432285-2	chr11	69431774	69432774	+	879.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 73 of 85)	intron (NM_001081330, intron 73 of 85)	-18599.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.58	2.3	1.85	1.35	2.33	4.82	8.45	1.33	2.5
Merged-chr5-72820795-3	chr5	72820285	72821285	+	879.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	47663.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	32.04	42.39	22.2	52.63	41.99	68.32	36.97	17.69	27.48
Merged-chr2-28537154-1	chr2	28536654	28537654	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	3690.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	16.02	13.82	2.77	6.75	5.13	1.61	11.62	6.63	5.0
Merged-chr4-134703846-3	chr4	134703359	134704359	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_207237, exon 1 of 12)	5' UTR (NM_207237, exon 1 of 12)	431.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	160.18	119.8	140.59	217.93	144.15	141.47	168.99	97.28	93.05
Merged-chrX-109147277-3	chrX	109146775	109147775	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	L1MD3|LINE|L1	-49481.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	36.04	50.69	24.05	49.93	41.52	23.31	35.91	34.05	10.62
Merged-chr11-115477600-3	chr11	115477101	115478101	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177778, intron 2 of 2)	intron (NM_177778, intron 2 of 2)	1934.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	116.7	82.02	77.7	97.83	36.39	63.5	65.48	58.81	61.83
Merged-chr19-36792801-3	chr19	36792291	36793291	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41441.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	2.29	1.38	3.7	2.7	0.47	0.8	4.22	1.77	5.0
Merged-chr3-132169205-2	chr3	132168684	132169684	+	879.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83892.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	14.87	9.68	11.1	10.8	10.26	16.88	11.62	8.84	7.49
Merged-chr7-64065030-1	chr7	64064530	64065530	+	879.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-88805.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	3.43	3.23	9.25	4.72	7.46	8.04	4.22	4.86	2.5
Merged-chr8-88200227-3	chr8	88199707	88200707	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164497, exon 2 of 13)	exon (NM_001164497, exon 2 of 13)	994.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	68.07	39.63	28.67	87.71	63.45	59.48	71.82	32.72	54.33
Merged-chr18-61040032-3	chr18	61039522	61040522	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3823.0	NM_009880	12590.0	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	7.44	2.3	1.85	4.05	1.87	1.61	0.0	0.0	4.37
Merged-chr12-52319303-3	chr12	52318825	52319825	+	879.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	161284.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	38.9	47.0	18.5	18.22	14.93	9.65	92.94	68.54	22.48
Merged-chr3-144110909-2	chr3	144110397	144111397	+	879.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91435.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	1.72	4.15	0.0	1.35	2.33	4.82	7.39	0.88	3.75
Merged-chr5-38038463-2	chr5	38037960	38038960	+	879.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289535)	promoter-TSS (NM_001289535)	-770.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	24.03	26.73	27.75	33.06	27.52	15.27	17.96	13.71	5.62
Merged-chr8-79375061-3	chr8	79374559	79375559	+	879.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	MIRb|SINE|MIR	24409.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	107.55	146.53	108.22	105.93	125.02	139.86	105.62	118.06	91.18
Merged-chr12-76016839-3	chr12	76016343	76017343	+	879.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005510, intron 66 of 115)	LTR55|LTR|ERVL?	107740.0	NR_039560	100628610.0		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	4.58	1.38	0.0	2.02	1.4	1.61	4.22	1.33	2.5
Merged-chr11-95503872-2	chr11	95503403	95504403	+	879.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10662.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	14.87	21.2	5.55	4.72	1.4	3.22	8.45	4.86	0.62
Merged-chr17-17393491-3	chr17	17392974	17393974	+	879.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025934, exon 10 of 10)	exon (NM_025934, exon 10 of 10)	-9212.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	149.31	212.88	112.84	146.41	198.73	142.27	186.94	240.98	104.92
Merged-chr13-75822685-2	chr13	75822182	75823182	+	879.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-17203.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	9.15	8.75	5.55	4.72	3.73	7.23	7.39	3.54	12.49
Merged-chr10-126502543-3	chr10	126502043	126503043	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207848.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	29.17	32.72	37.92	37.78	22.86	32.15	4.22	6.63	3.12
Merged-chr10-118795214-3	chr10	118794711	118795711	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73692.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	53.2	48.84	25.9	61.4	62.05	67.52	63.37	53.06	21.23
Merged-chr19-46522062-3	chr19	46521579	46522579	+	879.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	20431.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	200.22	120.73	113.77	199.72	100.3	140.66	201.73	201.63	79.32
Merged-chr15-77832764-3	chr15	77832255	77833255	+	879.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9420.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	21.74	14.75	27.75	14.84	15.39	23.31	19.01	13.27	15.61
Merged-chr3-117995581-3	chr3	117995089	117996089	+	879.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126653.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	1.72	1.84	5.55	5.4	6.53	6.43	8.45	7.96	3.12
Merged-chr17-47594284-3	chr17	47593766	47594766	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 3 of 6)	intron (NM_001081635, intron 3 of 6)	799.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	34.9	42.85	61.05	35.09	27.52	72.34	45.42	39.8	34.35
Merged-chr1-37478070-3	chr1	37477547	37478547	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1MC|LINE|L1	10558.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	116.7	107.82	101.74	137.64	121.29	72.34	173.21	192.78	94.3
Merged-chr4-43394680-3	chr4	43394177	43395177	+	879.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	-11825.0	NM_199057	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	46.34	42.85	22.2	37.11	29.39	33.76	52.81	35.82	38.1
Merged-chr10-24823978-4	chr10	24823475	24824475	+	879.5476070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134005, intron 4 of 24)	intron (NM_134005, intron 4 of 24)	12220.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	19.45	29.49	2.77	36.43	30.79	29.74	39.08	22.11	20.61
Merged-chr5-137293475-3	chr5	137292964	137293964	+	879.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106196)	promoter-TSS (NR_106196)	-316.0	NR_106196	102466887.0		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	34.9	47.92	35.15	31.71	36.39	49.03	27.46	26.53	40.59
Merged-chr7-114509036-2	chr7	114508536	114509536	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 7 of 15)	intron (NM_011055, intron 7 of 15)	53936.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	3.43	1.84	5.55	6.07	5.13	3.22	3.17	5.75	3.75
Merged-chr4-66828862-3	chr4	66828377	66829377	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021297, intron 1 of 2)	intron (NM_021297, intron 1 of 2)	1326.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	116.7	174.18	92.5	138.32	184.27	121.37	159.48	241.87	95.55
Merged-chr3-103021469-2	chr3	103020964	103021964	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	intron (NM_001310693, intron 1 of 17)	918.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	145.87	128.1	116.54	170.03	118.96	89.22	152.09	141.49	94.93
Merged-chr17-74711017-2	chr17	74710531	74711531	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6719.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.86	2.3	3.7	6.07	4.2	1.61	31.69	39.8	39.97
Merged-chr2-5797946-1	chr2	5797446	5798446	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133837, intron 11 of 12)	intron (NM_133837, intron 11 of 12)	-47088.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	12.01	7.37	11.1	28.34	16.33	27.33	13.73	8.84	9.99
Merged-chr9-55149266-3	chr9	55148772	55149772	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346657)	promoter-TSS (NM_001346657)	-97.0	NM_180600	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	55.49	28.57	22.2	70.17	33.12	28.94	50.7	10.61	19.98
Merged-chr10-93799737-2	chr10	93799218	93800218	+	879.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31837.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.72	0.92	3.7	4.05	1.87	3.22	13.73	8.84	3.75
Merged-chr5-31942817-2	chr5	31942288	31943288	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-193684.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	24.6	31.79	18.5	20.92	23.79	22.51	3.17	3.1	3.75
Merged-chrY-90828904-2	chrY	90828409	90829409	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	10497.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	12.59	10.14	3.7	9.45	2.33	17.68	1.06	0.44	1.87
Merged-chr1-64533637-3	chr1	64533142	64534142	+	879.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037726, intron 1 of 6)	CpG	838.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	179.05	225.32	219.21	146.41	153.01	145.49	208.07	198.53	185.48
Merged-chr14-31458690-3	chr14	31458185	31459185	+	879.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22585.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	28.6	27.65	23.12	36.43	20.06	21.7	19.01	16.8	7.49
Merged-chr5-134555683-3	chr5	134555167	134556167	+	879.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3233.0	NM_009990	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	22.31	14.75	18.5	12.82	10.26	16.08	16.9	8.4	8.74
Merged-chr12-110703317-4	chr12	110702801	110703801	+	879.44165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6906.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	14.3	9.68	1.85	23.62	16.79	9.65	20.07	12.82	15.61
Merged-chrY-259239-3	chrY	258729	259729	+	879.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12C|LTR|ERVK	53079.0	NR_126545	69438.0		NR_126545	ENSMUSG00000101796	1700020D14Rik	-	RIKEN cDNA 1700020D14 gene	ncRNA	34.9	29.95	29.6	55.33	27.99	14.47	39.08	38.03	39.97
Merged-chr4-86686729-1	chr4	86686229	86687229	+	879.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16670.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.58	3.69	1.85	16.19	9.33	6.43	3.17	3.54	6.25
Merged-chr12-8496892-13	chr12	8496409	8497409	+	879.391052	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007483)	TTS (NM_007483)	3100.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	28.03	33.18	31.45	29.01	23.79	17.68	49.64	33.6	43.72
Merged-chr6-114883609-3	chr6	114883112	114884112	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	38209.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	62.93	56.68	55.5	62.07	48.98	70.73	64.43	42.01	36.22
Merged-chr10-70213827-3	chr10	70213322	70214322	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304739, intron 1 of 2)	(T)n|Simple_repeat|Simple_repeat	9158.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	61.21	64.05	66.6	56.68	49.92	63.5	86.61	111.87	36.85
Merged-chr2-57297707-3	chr2	57297194	57298194	+	879.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 3 of 16)	intron (NM_010274, intron 3 of 16)	59312.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	8.01	9.22	9.25	7.42	3.27	11.25	9.51	7.96	6.25
Merged-chr19-32249921-3	chr19	32249364	32250364	+	879.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-38851.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.01	7.83	5.55	8.1	7.0	9.65	6.34	10.17	11.24
Merged-chr2-58801354-3	chr2	58800853	58801853	+	879.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46169.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	22.88	24.88	20.35	28.34	31.26	18.49	21.12	29.63	24.98
Merged-chr17-36839173-3	chr17	36838645	36839645	+	879.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	Lx4A|LINE|L1	1999.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	17.73	17.05	16.65	14.17	13.53	15.27	15.84	19.01	11.87
Merged-chr11-6465292-2	chr11	6464804	6465804	+	879.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10772.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	4.58	2.76	7.4	5.4	2.8	1.61	1.06	2.21	1.87
Merged-chr17-30007157-2	chr17	30006710	30007710	+	879.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	2171.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	80.09	81.1	35.15	41.16	24.72	31.35	41.19	39.8	28.1
Merged-chr10-46107503-3	chr10	46107004	46108004	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137244.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	16.02	16.13	14.8	15.52	17.73	16.88	16.9	16.8	27.48
Merged-chr1-106037116-3	chr1	106036633	106037633	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	46727.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	7.44	2.76	0.92	6.07	5.13	0.0	7.39	3.1	6.25
Merged-chr4-95084133-1	chr4	95083633	95084633	+	879.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-31911.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	17.16	18.43	20.35	16.87	14.0	34.56	8.45	2.65	7.49
Merged-chr6-86793218-1	chr6	86792718	86793718	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	366.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	137.29	99.99	91.57	105.93	109.16	60.28	54.92	60.13	13.74
Merged-chr10-122614932-3	chr10	122614436	122615436	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33403.0	NR_105839	102465223.0		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	34.9	29.49	15.72	45.21	48.98	37.78	90.83	85.78	47.46
Merged-chr10-125265184-1	chr10	125264684	125265684	+	879.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	B3|SINE|B2	43632.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.57	5.99	1.85	4.72	3.27	1.61	3.17	1.77	2.5
Merged-chr13-48516108-3	chr13	48515600	48516600	+	879.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2664.0	NM_001164576	67911.0	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	5.72	12.9	14.8	8.1	6.06	16.88	6.34	11.94	13.74
Merged-chr4-139575439-3	chr4	139575031	139576031	+	879.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001205173, exon 1 of 9)	exon (NM_001205173, exon 1 of 9)	811.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	75.51	38.71	31.45	38.46	18.19	21.7	46.47	28.74	16.86
Merged-chr7-122415598-3	chr7	122415097	122416097	+	879.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	126472.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	14.87	12.44	8.32	11.47	7.93	4.02	11.62	9.73	10.62
Merged-chr17-3102528-3	chr17	3102045	3103045	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12427.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	12.01	4.61	3.7	6.07	7.93	17.68	8.45	3.54	12.49
Merged-chr19-29448542-3	chr19	29448042	29449042	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 4 of 5)	RLTR14-int|LTR|ERV1	37623.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	29.75	17.97	12.02	29.01	20.53	35.37	21.12	28.3	21.23
Merged-chr15-53196509-3	chr15	53196009	53197009	+	879.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	149674.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	21.17	20.74	12.95	20.92	10.73	11.25	7.39	4.42	6.25
Merged-chr9-65577008-3	chr9	65576550	65577550	+	879.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	3037.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	139.58	125.33	114.69	122.12	78.84	146.29	126.74	120.27	111.79
Merged-chrX-96227249-2	chrX	96226750	96227750	+	879.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-12676.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	13.73	21.2	9.25	12.82	8.4	8.84	14.79	7.96	6.87
Merged-chr13-23583596-3	chr13	23583179	23584179	+	879.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178194)	TTS (NM_178194)	2077.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	49.77	52.53	54.57	37.11	40.12	39.39	43.3	44.22	45.59
Merged-chr6-50144854-1	chr6	50144354	50145354	+	879.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	33994.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	14.3	10.14	7.4	6.07	7.46	10.45	6.34	3.98	6.25
Merged-chr18-70568942-3	chr18	70568453	70569453	+	879.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311071, exon 1 of 3)	exon (NM_001311071, exon 1 of 3)	661.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	46.34	30.41	68.45	35.76	16.79	22.51	85.55	31.39	26.23
Merged-chr1-80453219-3	chr1	80452743	80453743	+	879.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	7311.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	44.05	39.63	27.75	29.01	24.72	36.17	40.14	25.2	45.59
Merged-chr17-25282310-3	chr17	25281802	25282802	+	879.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31B2|LTR|ERVK	-7992.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	7.44	7.37	1.85	10.8	12.6	25.72	7.39	4.86	2.5
Merged-chr4-132336036-3	chr4	132335559	132336559	+	879.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133878, intron 4 of 9)	intron (NM_133878, intron 4 of 9)	-6521.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	47.48	41.93	47.17	16.19	16.33	21.7	116.18	125.58	47.46
Merged-chr13-105294228-3	chr13	105293708	105294708	+	879.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	CpG	277.0	NM_001360890	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	125.28	119.34	99.89	127.52	90.5	106.9	109.84	73.4	71.2
Merged-chr1-167618520-1	chr1	167618020	167619020	+	879.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159731, intron 1 of 8)	intron (NM_001159731, intron 1 of 8)	255.0	NM_001159731	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	4.58	4.61	0.0	12.82	5.6	6.43	2.11	0.44	2.5
Merged-chr7-3712522-2	chr7	3712036	3713036	+	879.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011095)	TTS (NM_011095)	7846.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	11.44	16.13	22.2	19.57	10.73	42.6	16.9	17.24	32.48
Merged-chr8-72350947-2	chr8	72350443	72351443	+	879.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007944, intron 22 of 23)	intron (NM_007944, intron 22 of 23)	31881.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	33.75	55.29	26.82	39.13	51.32	45.01	38.02	29.18	31.85
Merged-chr16-11352116-2	chr16	11351612	11352612	+	879.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 3 of 20)	intron (NM_028964, intron 3 of 20)	29208.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	12.59	8.29	12.02	8.77	11.66	4.82	8.45	3.98	5.0
Merged-chr5-81107604-3	chr5	81107078	81108078	+	879.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	85985.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.29	5.07	0.0	2.7	6.53	0.0	3.17	2.65	0.0
Merged-chr4-83274354-3	chr4	83273850	83274850	+	879.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	49839.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	80.09	78.79	61.05	70.85	57.38	69.13	52.81	48.2	34.97
Merged-chr11-72660560-3	chr11	72660046	72661046	+	879.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025985, intron 1 of 5)	PB1D9|SINE|Alu	-29456.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	23.45	19.81	13.87	17.54	17.26	12.86	16.9	10.17	11.24
Merged-chr14-102832523-2	chr14	102832040	102833040	+	879.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	150092.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	13.16	6.45	1.85	9.45	6.06	4.02	13.73	13.27	6.87
Merged-chr2-129903592-2	chr2	129903094	129904094	+	879.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102135.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	8.01	11.06	9.25	12.82	5.13	20.09	13.73	5.75	12.49
Merged-chr2-112449334-3	chr2	112448838	112449838	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5687.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	10.87	11.52	11.1	10.8	18.66	20.9	8.45	4.86	7.49
Merged-chr19-44144475-3	chr19	44143974	44144974	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028607, intron 2 of 4)	intron (NM_028607, intron 2 of 4)	1972.0	NM_028607	73689.0	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	10.3	7.83	7.4	7.42	8.86	24.11	7.39	5.31	8.74
Merged-chr4-62664019-3	chr4	62663516	62664516	+	879.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-9958.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	209.94	226.25	125.79	165.98	132.02	174.42	200.68	233.46	166.12
Merged-chr2-164075220-3	chr2	164074728	164075728	+	879.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	intron (NM_021420, intron 1 of 10)	1050.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	44.05	32.25	39.77	42.51	35.92	44.21	63.37	53.94	35.6
Merged-chr1-72963597-1	chr1	72963097	72964097	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52302.0	NM_009407	21958.0	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	0.0	1.38	1.85	7.42	6.06	1.61	3.17	3.54	0.0
Merged-chr4-59878239-1	chr4	59877739	59878739	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 3 of 8)	intron (NM_172468, intron 3 of 8)	36817.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	26.31	25.8	21.27	19.57	20.99	28.94	17.96	13.71	21.23
Merged-chr5-118097605-1	chr5	118097105	118098105	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172721, intron 5 of 10)	intron (NM_172721, intron 5 of 10)	57853.0	NM_172721	231672.0	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	5.15	4.61	0.0	5.4	7.93	6.43	5.28	3.54	7.49
Merged-chr9-64021210-1	chr9	64020710	64021710	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008542, exon 1 of 4)	5' UTR (NM_008542, exon 1 of 4)	849.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	30.32	33.64	45.32	41.16	46.65	66.71	67.6	63.67	26.85
Merged-chr17-87540202-1	chr17	87539702	87540702	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-93267.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	17.16	17.51	24.05	41.16	39.65	24.92	10.56	7.52	9.99
Merged-chr18-67270172-3	chr18	67269663	67270663	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19060.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	1.72	1.84	0.0	6.07	3.73	0.0	1.06	3.54	2.5
Merged-chr7-127121845-1	chr7	127121345	127122345	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	184.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	21.17	9.68	17.57	16.19	17.73	29.74	51.75	30.51	28.1
Merged-chr6-31085099-1	chr6	31084599	31085599	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22006.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	13.73	17.51	19.42	11.47	13.06	24.11	24.29	8.4	15.61
Merged-chrX-17566570-2	chrX	17566065	17567065	+	879.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313746, intron 3 of 4)	intron (NM_001313746, intron 3 of 4)	5442.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	25.17	41.01	27.75	21.59	23.79	31.35	30.63	25.2	28.73
Merged-chr12-111429540-1	chr12	111429040	111430040	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289487, intron 13 of 13)	intron (NM_001289487, intron 13 of 13)	12095.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	276.3	281.54	273.79	267.19	197.8	227.47	312.63	352.85	214.21
Merged-chr6-52825724-3	chr6	52825219	52826219	+	879.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 2 of 4)	intron (NM_173406, intron 2 of 4)	83901.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	9.15	1.84	0.0	6.07	5.13	8.04	4.22	3.54	1.25
Merged-chr13-85489893-3	chr13	85489395	85490395	+	878.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200409.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	13.73	16.59	16.65	8.77	7.93	15.27	19.01	13.27	14.99
Merged-chr14-32784601-2	chr14	32784116	32785116	+	878.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1347.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	72.65	60.82	32.37	82.99	62.05	61.09	98.23	75.61	49.96
Merged-chr1-171019810-3	chr1	171019301	171020301	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144559, intron 2 of 4)	intron (NM_144559, intron 2 of 4)	875.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	82.38	79.72	74.0	113.35	85.84	109.32	123.57	156.97	74.94
Merged-chr10-13866959-3	chr10	13866458	13867458	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	T-rich|Low_complexity|Low_complexity	1999.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	61.21	73.26	59.2	35.09	31.26	46.62	83.44	129.11	36.85
Merged-chr2-129585812-3	chr2	129585299	129586299	+	878.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	313.49	211.04	160.94	246.95	153.01	105.3	161.6	162.72	131.78
Merged-chr17-45619120-3	chr17	45618611	45619611	+	878.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17009.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	84.09	99.99	79.55	52.63	55.05	85.2	90.83	112.31	70.57
Merged-chr3-95707695-2	chr3	95707195	95708195	+	878.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19778.0	NM_001301705	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	5.72	11.06	4.62	10.12	10.73	10.45	7.39	10.17	6.87
Merged-chr9-58248970-3	chr9	58248490	58249490	+	878.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 1 of 7)	intron (NM_008884, intron 1 of 7)	796.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	97.25	104.14	104.52	99.18	98.43	125.39	171.1	187.04	82.44
Merged-chr11-69058469-3	chr11	69057984	69058984	+	878.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1291.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	116.7	100.91	78.62	80.29	57.38	118.96	99.28	113.19	78.69
Merged-chr13-44484518-2	chr13	44484033	44485033	+	878.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44806.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	12.59	8.75	4.62	16.87	8.86	9.65	50.7	60.13	39.97
Merged-chr9-44460806-2	chr9	44460307	44461307	+	878.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6040.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	98.97	111.51	83.25	103.91	76.51	61.89	122.52	130.44	68.7
Merged-chr8-11107448-1	chr8	11106948	11107948	+	878.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99018.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.58	4.61	3.7	20.92	11.66	15.27	8.45	6.63	6.87
Merged-chr2-152671139-2	chr2	152670625	152671625	+	878.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	1664.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	13.73	13.36	14.8	15.52	18.19	21.7	17.96	12.82	11.24
Merged-chr6-140767859-3	chr6	140767353	140768353	+	878.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140968.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	80.66	62.21	71.22	75.57	52.72	82.79	91.89	98.6	56.21
Merged-chr5-35743414-1	chr5	35742914	35743914	+	878.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3427.0	NM_001359895	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	8.01	5.53	11.1	6.75	5.6	4.82	28.52	15.48	18.74
Merged-chr10-121507516-3	chr10	121507016	121508016	+	878.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31266.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	22.31	24.88	25.9	56.0	46.65	53.85	39.08	35.37	19.98
Merged-chr2-71376684-2	chr2	71376236	71377236	+	878.8125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9182.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	9.15	7.83	8.32	23.62	15.86	10.45	71.82	50.41	23.73
Merged-chr10-123063081-3	chr10	123062579	123063579	+	878.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163024, intron 1 of 34)	intron (NM_001163024, intron 1 of 34)	13426.0	NM_001163024	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	43.48	34.1	37.0	35.09	33.12	41.8	22.18	22.99	25.61
Merged-chr1-180390995-3	chr1	180390485	180391485	+	878.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-60436.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	55.49	58.98	48.1	41.16	25.66	24.92	41.19	39.8	43.09
Merged-chr1-191403329-3	chr1	191402830	191403830	+	878.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6289.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	12.59	3.69	3.7	7.42	10.26	10.45	6.34	2.21	5.62
Merged-chr12-16532617-1	chr12	16532117	16533117	+	878.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57153.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	3.43	5.99	0.0	3.37	4.2	1.61	3.17	1.33	11.24
Merged-chr10-122564666-3	chr10	122564140	122565140	+	878.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040616)	TTS (NR_040616)	5251.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	20.59	24.42	13.87	26.99	22.39	55.46	30.63	40.24	36.85
Merged-chr2-119173020-2	chr2	119172531	119173531	+	878.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177157)	TTS (NM_177157)	-1478.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	4.58	1.84	4.62	4.05	2.33	8.04	4.22	0.44	0.0
Merged-chr7-113378510-3	chr7	113377998	113378998	+	878.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9159.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	6.86	11.52	3.7	13.49	8.4	4.02	5.28	4.42	2.5
Merged-chr3-152340262-3	chr3	152339700	152340700	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162375, intron 1 of 13)	CpG	207.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	17.16	8.75	5.55	56.68	20.06	16.88	27.46	18.13	9.99
Merged-chr6-83656178-3	chr6	83655705	83656705	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016751)	promoter-TSS (NM_016751)	-89.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	51.48	52.99	58.27	112.68	88.17	112.53	98.23	83.13	53.71
Merged-chr11-69257998-3	chr11	69257488	69258488	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20966.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	58.35	56.68	74.92	45.88	53.65	48.23	63.37	93.3	32.48
Merged-chr12-84614215-3	chr12	84613724	84614724	+	878.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008992, intron 3 of 18)	intron (NM_008992, intron 3 of 18)	3242.0	NM_008992	19300.0	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	27.46	35.02	49.95	101.88	94.23	83.59	73.93	73.4	31.85
Merged-chr7-19696625-1	chr7	19696125	19697125	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009696, exon 4 of 4)	exon (NM_009696, exon 4 of 4)	1773.0	NM_001305819	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	12.01	12.9	24.05	26.99	18.66	53.85	25.35	25.2	26.23
Merged-chr14-33857157-3	chr14	33856637	33857637	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-45854.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	2.29	8.75	3.7	10.8	10.26	7.23	19.01	12.38	1.87
Merged-chr16-33837444-1	chr16	33836944	33837944	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	7779.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	21.74	32.72	25.9	39.13	44.32	47.42	25.35	31.39	36.22
Merged-chr8-85841581-3	chr8	85841084	85842084	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028007)	promoter-TSS (NM_028007)	582.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	68.65	54.83	61.05	54.65	59.71	80.38	94.0	74.28	48.71
Merged-chr15-84126633-3	chr15	84126145	84127145	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	6.86	11.06	8.32	5.4	7.93	25.72	16.9	9.29	19.36
Merged-chr11-69679309-3	chr11	69678823	69679823	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030702, intron 2 of 10)	intron (NM_030702, intron 2 of 10)	2647.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	50.91	39.17	23.12	27.66	37.32	44.21	40.14	41.12	58.08
Merged-chr13-3373580-1	chr13	3373080	3374080	+	878.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-104723.0	NR_015522	76937.0	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	20.59	49.76	12.95	49.25	94.23	29.74	17.96	41.56	12.49
Merged-chr9-124014367-1	chr9	124013867	124014867	+	878.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7604.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	72.08	104.6	68.45	62.07	88.17	77.97	78.16	65.88	73.07
Merged-chr13-47242576-2	chr13	47242073	47243073	+	878.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 6 of 7)	intron (NM_146042, intron 6 of 7)	48570.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	20.59	17.97	8.32	15.52	20.06	20.09	12.67	5.31	12.49
Merged-chr3-10307795-3	chr3	10307288	10308288	+	878.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6605.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	4.0	0.92	1.85	0.67	0.47	0.0	1.06	3.54	0.0
Merged-chr3-105899919-3	chr3	105899373	105900373	+	878.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-4548.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	42.33	45.62	33.3	38.46	20.06	36.17	31.69	34.93	23.11
Merged-chr11-96303292-2	chr11	96302795	96303795	+	878.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008268)	promoter-TSS (NM_008268)	-217.0	NM_008268	15413.0	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	5.72	10.6	2.77	22.94	20.99	26.53	8.45	4.42	3.75
Merged-chr5-112249788-3	chr5	112249276	112250276	+	878.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021351, intron 3 of 5)	intron (NM_021351, intron 3 of 5)	2742.0	NM_001312884	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	43.48	42.39	40.7	54.65	34.99	48.23	55.98	51.73	33.1
Merged-chr2-117146214-3	chr2	117145719	117146719	+	878.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25148.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	85.24	130.4	67.52	98.51	70.44	87.61	87.66	101.7	67.45
Merged-chr17-34304444-3	chr17	34303952	34304952	+	878.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1415.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	240.26	140.54	165.57	75.57	21.46	32.96	171.1	134.86	68.07
Merged-chr10-70251402-3	chr10	70250923	70251923	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	6147.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	49.77	48.84	47.17	58.03	41.05	55.46	77.1	63.67	45.59
Merged-chr2-36236604-3	chr2	36236107	36237107	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	6181.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	62.35	55.75	75.85	74.89	50.85	94.04	120.41	97.28	43.09
Merged-chr19-32665459-3	chr19	32664946	32665946	+	878.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011864, exon 13 of 13)	exon (NM_011864, exon 13 of 13)	45441.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	13.73	14.75	18.5	6.07	7.93	14.47	19.01	17.24	5.0
Merged-chr10-78090238-3	chr10	78089733	78090733	+	878.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20865.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	8.58	2.3	0.0	5.4	6.06	6.43	4.22	1.77	6.25
Merged-chr14-17428036-3	chr14	17427523	17428523	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-232937.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	17.16	29.03	36.07	14.84	21.93	30.54	14.79	15.92	21.86
Merged-chr3-69060277-3	chr3	69059776	69060776	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15534.0	NM_025863	66949.0	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	6.86	7.83	1.85	7.42	2.8	5.63	6.34	3.54	4.37
Merged-chr18-54839231-3	chr18	54838724	54839724	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	150956.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	9.72	0.92	7.4	6.75	3.27	1.61	3.17	4.42	6.25
Merged-chr13-37218085-1	chr13	37217585	37218585	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-127260.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	29.75	44.24	21.27	60.72	44.78	45.82	25.35	29.18	23.73
Merged-chr13-3573952-2	chr13	3573457	3574457	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134063, exon 14 of 20)	exon (NM_134063, exon 14 of 20)	35882.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	12.01	7.83	15.72	13.49	7.93	12.06	9.51	5.75	5.0
Merged-chr8-33655443-2	chr8	33654932	33655932	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	2194.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.15	6.91	12.95	8.1	4.2	0.0	59.15	54.83	59.95
Merged-chr17-67196446-1	chr17	67195946	67196946	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	158013.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.0	6.91	5.55	5.4	4.67	17.68	9.51	5.75	2.5
Merged-chr4-141619074-1	chr4	141618574	141619574	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145987)	promoter-TSS (NM_145987)	-441.0	NR_151462	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	17.16	6.45	9.25	22.27	10.73	9.65	11.62	3.54	5.62
Merged-chr7-129756723-2	chr7	129756230	129757230	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164867.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	10.3	17.97	8.32	11.47	11.2	24.92	11.62	6.19	23.73
Merged-chr15-81534139-2	chr15	81533642	81534642	+	878.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-52072.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	50.91	53.45	59.2	42.51	29.86	71.54	111.96	122.92	44.34
Merged-chr4-136145695-2	chr4	136145179	136146179	+	878.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008321)	TTS (NM_008321)	1857.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	349.52	340.52	208.11	287.43	267.31	176.83	321.08	351.08	162.38
Merged-chr5-136086338-5	chr5	136085848	136086848	+	878.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	2432.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	106.97	90.77	116.54	104.58	89.57	85.2	164.76	188.81	88.06
Merged-chr19-11917555-3	chr19	11917064	11918064	+	878.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 2 of 18)	intron (NM_172635, intron 2 of 18)	5165.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	88.67	84.32	49.02	64.1	55.05	53.85	59.15	59.25	29.35
Merged-chr2-18087814-3	chr2	18087319	18088319	+	878.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010804, intron 3 of 22)	RMER16_Mm|LTR|ERVK	23234.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	10.3	11.52	14.8	21.59	7.46	19.29	19.01	14.59	7.49
Merged-chr4-132008844-3	chr4	132008359	132009359	+	878.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	B3A|SINE|B2	40219.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	324.93	280.16	196.09	346.13	224.86	213.81	354.88	388.22	161.13
Merged-chr9-98350768-1	chr9	98350268	98351268	+	878.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	54198.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	48.05	39.63	46.25	106.61	98.9	91.63	21.12	19.9	15.61
Merged-chr1-54925728-3	chr1	54925230	54926230	+	878.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	CpG	657.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	140.73	141.46	75.85	134.27	109.63	136.64	102.45	69.42	75.57
Merged-chr16-45666359-3	chr16	45665865	45666865	+	878.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172455, intron 12 of 17)	Lx7|LINE|L1	-12247.0	NM_145389	212998.0	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	4.58	5.53	1.85	7.42	5.6	0.0	6.34	3.54	5.0
Merged-chr10-42760420-3	chr10	42759896	42760896	+	878.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1100.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	16.59	21.2	16.65	15.52	10.26	8.04	22.18	35.37	17.49
Merged-chrX-17518929-3	chrX	17518431	17519431	+	878.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53076.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	28.03	26.26	13.87	21.59	15.39	11.25	25.35	24.76	21.23
Merged-chr10-80165873-2	chr10	80165320	80166320	+	878.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2019.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	16.02	10.6	6.47	19.57	3.27	12.06	11.62	8.4	5.0
Merged-chr17-32891691-3	chr17	32891169	32892169	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207245)	promoter-TSS (NM_207245)	-66.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	11.44	14.75	5.55	28.34	28.92	46.62	53.87	46.43	36.22
Merged-chr13-55205270-3	chr13	55204759	55205759	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4523.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	11.44	5.53	7.4	20.24	21.93	9.65	22.18	15.48	18.74
Merged-chr9-102982615-3	chr9	102982128	102983128	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-25861.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	11.44	10.6	7.4	8.1	8.4	12.06	15.84	14.59	13.74
Merged-chr6-31065639-3	chr6	31065129	31066129	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2536.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	5.15	5.53	16.65	7.42	5.6	10.45	6.34	2.65	3.75
Merged-chr4-150860696-3	chr4	150860133	150861133	+	878.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	5563.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	127.57	198.6	74.0	78.27	96.57	93.24	119.35	166.25	80.56
Merged-chr16-21590556-1	chr16	21590056	21591056	+	878.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 44 of 46)	intron (NM_001081366, intron 44 of 46)	104109.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	18.31	19.35	6.47	60.72	32.66	32.96	24.29	22.99	15.61
Merged-chr5-36998314-1	chr5	36997814	36998814	+	878.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9332.0	NM_011716	22393.0	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	wolframin ER transmembrane glycoprotein	protein-coding	0.57	1.84	1.85	4.05	0.47	0.0	4.22	3.54	7.49
Merged-chr6-72636256-3	chr6	72635781	72636781	+	878.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009332, intron 4 of 11)	intron (NM_009332, intron 4 of 11)	6450.0	NR_040421	100038714.0	Mm.321330	NR_040421		Gm15401	-	predicted gene 15401	ncRNA	2.29	4.15	3.7	7.42	5.13	1.61	5.28	1.33	7.49
Merged-chr11-119991427-3	chr11	119990921	119991921	+	878.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 6 of 13)	intron (NM_001037754, intron 6 of 13)	-23346.0	NR_037225	100526518.0		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	5.72	3.69	1.85	6.75	1.4	3.22	7.39	0.88	6.87
Merged-chr7-122010621-3	chr7	122010128	122011128	+	878.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028758, intron 3 of 16)	intron (NM_028758, intron 3 of 16)	10570.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	19.45	10.14	3.7	13.49	5.13	8.04	17.96	7.52	6.87
Merged-chr9-89237325-3	chr9	89236832	89237832	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	25948.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	13.73	2.3	1.85	12.14	4.2	11.25	3.17	5.31	3.75
Merged-chr4-148676392-2	chr4	148675897	148676897	+	878.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33080.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	33.75	30.87	13.87	18.89	17.26	21.7	88.72	86.22	69.95
Merged-chr10-13470468-3	chr10	13469977	13470977	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	3919.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	9.72	19.81	11.1	20.92	22.86	23.31	9.51	6.63	9.99
Merged-chr9-37230803-2	chr9	37230293	37231293	+	878.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	22477.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	30.32	23.5	8.32	27.66	14.93	22.51	8.45	6.63	13.74
Merged-chr10-99252555-3	chr10	99252054	99253054	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10677.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.58	17.05	16.65	19.57	12.13	9.65	12.67	12.82	7.49
Merged-chr17-45599566-3	chr17	45599036	45600036	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199115)	promoter-TSS (NM_001199115)	67.0	NM_001199115	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	69.79	52.99	44.4	65.45	31.26	56.27	62.31	48.64	26.85
Merged-chr11-77802768-3	chr11	77802268	77803268	+	878.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	1470.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	43.48	49.76	55.5	70.85	61.11	71.54	68.65	54.83	51.21
Merged-chr14-30200542-3	chr14	30200032	30201032	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	152954.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	9.15	2.76	9.25	6.07	6.53	5.63	7.39	3.54	13.12
Merged-chr11-44581461-3	chr11	44580993	44581993	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4824.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	22.31	17.51	6.47	29.01	25.19	20.9	3.17	1.33	3.75
Merged-chr1-36345219-3	chr1	36344708	36345708	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172652, intron 16 of 20)	intron (NM_172652, intron 16 of 20)	3550.0	NR_105863	102465541.0		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	10.3	8.29	12.02	32.39	18.66	23.31	47.53	52.62	16.24
Merged-chr2-60178362-3	chr2	60177860	60178860	+	878.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31576.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	20.59	10.6	9.25	14.17	15.39	23.31	13.73	12.38	8.12
Merged-chr11-97985485-3	chr11	97984981	97985981	+	878.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 1 of 13)	intron (NM_001163608, intron 1 of 13)	965.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	11.44	8.29	10.17	12.82	5.13	6.43	9.51	11.5	6.25
Merged-chr11-53758205-3	chr11	53757694	53758694	+	878.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5460.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	12.01	15.67	12.95	2.7	2.8	9.65	17.96	6.63	6.25
Merged-chr4-48047259-3	chr4	48046767	48047767	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	CpG	1962.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	7.44	7.83	6.47	7.42	7.93	0.8	14.79	3.1	0.0
Merged-chr7-142919394-3	chr7	142918898	142919898	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19432.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.57	0.46	1.85	1.35	0.93	4.82	0.0	0.0	1.25
Merged-chr2-152738255-6	chr2	152737817	152738817	+	878.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010495)	TTS (NM_010495)	2066.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	115.55	119.34	60.12	64.1	49.92	37.78	55.98	42.01	41.84
Merged-chr8-23256008-5	chr8	23255516	23256516	+	878.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020585, intron 1 of 4)	intron (NM_020585, intron 1 of 4)	1064.0	NM_020585	57437.0	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	97.82	71.42	60.12	66.8	51.78	63.5	96.11	102.14	71.2
Merged-chr19-60999798-2	chr19	60999327	61000327	+	878.0750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	110078.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	26.89	22.58	29.6	24.96	21.93	20.9	16.9	13.71	29.98
Merged-chr12-79089636-3	chr12	79089154	79090154	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029988)	promoter-TSS (NM_029988)	16.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	11.44	11.52	7.4	19.57	13.53	16.08	11.62	7.52	5.0
Merged-chr2-93346719-3	chr2	93346196	93347196	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12209.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	27.46	13.82	5.55	16.19	15.86	19.29	25.35	12.82	4.37
Merged-chr6-57533680-3	chr6	57533109	57534109	+	878.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	1817.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	38.9	45.16	46.25	29.69	22.39	18.49	32.74	34.93	31.23
Merged-chr6-99485899-1	chr6	99485399	99486399	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	35094.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	21.74	17.51	5.55	35.09	27.99	22.51	26.4	23.43	14.36
Merged-chr11-60116106-1	chr11	60115606	60116606	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	PB1D10|SINE|Alu	11093.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	13.16	20.27	23.12	43.86	50.85	54.66	64.43	54.39	44.34
Merged-chr6-97523313-3	chr6	97522826	97523826	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-35506.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	9.15	4.15	3.7	4.72	3.73	5.63	7.39	3.1	3.12
Merged-chrX-133689044-1	chrX	133688544	133689544	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001105246)	promoter-TSS (NM_001105246)	-51.0	NM_001105246	279653.0	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.0	0.46	0.0	0.0	0.47	4.82	0.0	0.44	0.0
Merged-chr14-54405966-1	chr14	54405466	54406466	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	G-rich|Low_complexity|Low_complexity	3506.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	116.13	101.83	99.89	164.63	125.49	136.64	119.35	72.96	39.97
Merged-chr6-83657285-1	chr6	83656785	83657785	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1169.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	40.04	49.3	52.72	54.65	53.65	72.34	28.52	23.43	17.49
Merged-chr12-98773885-1	chr12	98773385	98774385	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160108, intron 1 of 6)	intron (NM_001160108, intron 1 of 6)	2863.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	10.3	8.75	12.95	8.1	10.73	16.88	19.01	4.86	8.12
Merged-chr14-70119506-2	chr14	70118985	70119985	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360404, intron 2 of 7)	intron (NM_001360404, intron 2 of 7)	19392.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	6.86	10.14	12.95	6.75	4.67	19.29	13.73	3.98	7.49
Merged-chr11-21326061-3	chr11	21325571	21326571	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290634, intron 8 of 9)	Lx8|LINE|L1	18604.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	25.17	27.19	24.05	41.83	21.93	37.78	15.84	19.01	23.11
Merged-chr6-117497331-1	chr6	117496831	117497831	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152214, intron 2 of 2)	RMER19B|LTR|ERVK	2096.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	13.73	14.75	12.95	21.59	13.06	12.86	21.12	9.29	8.12
Merged-chr8-85554542-3	chr8	85554033	85555033	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019794, intron 1 of 8)	intron (NM_019794, intron 1 of 8)	738.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	285.45	314.72	215.51	217.93	261.24	195.32	290.45	252.48	171.75
Merged-chr7-19299410-2	chr7	19298899	19299899	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8330.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	5.15	0.92	0.0	6.07	0.93	4.82	4.22	0.88	6.25
Merged-chr5-3492010-1	chr5	3491510	3492510	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-51823.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	32.04	32.25	21.27	60.72	33.59	68.32	34.85	17.24	24.36
Merged-chr4-47287706-2	chr4	47287200	47288200	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 22 of 39)	intron (NM_009928, intron 22 of 39)	-65522.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	1.72	0.92	1.85	1.35	4.2	1.61	5.28	0.44	1.25
Merged-chr10-81384828-3	chr10	81384330	81385330	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133964, intron 1 of 4)	intron (NM_133964, intron 1 of 4)	402.0	NM_133964	102115.0	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	272.3	210.12	147.99	268.54	242.12	177.64	271.44	329.86	98.05
Merged-chr11-69073041-1	chr11	69072541	69073541	+	878.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028566)	promoter-TSS (NR_028566)	-385.0	NR_028566	100216530.0	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	303.76	269.56	104.52	284.06	279.91	113.33	266.16	368.77	85.56
Merged-chrX-42142830-3	chrX	42142308	42143308	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-6604.0	NM_001077712	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	34.9	38.71	19.42	37.78	25.19	29.74	28.52	30.51	27.48
Merged-chr12-40576573-1	chr12	40576073	40577073	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	130520.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	17.73	13.82	8.32	14.17	17.26	10.45	14.79	10.61	14.36
Merged-chr1-95613538-1	chr1	95613038	95614038	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	54056.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	12.01	4.15	3.7	7.42	11.66	0.8	6.34	6.19	6.25
Merged-chr2-129515967-1	chr2	129515467	129516467	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	intron (NM_177653, intron 1 of 6)	20635.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	72.08	68.2	59.2	51.28	61.58	60.28	49.64	47.75	33.1
Merged-chr15-11396624-1	chr15	11396124	11397124	+	878.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033074, intron 2 of 18)	intron (NM_033074, intron 2 of 18)	3034.0	NM_033074	110960.0	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	5.15	8.75	5.55	3.37	1.87	4.82	2.11	1.33	0.62
Merged-chr6-81440757-1	chr6	81440257	81441257	+	878.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	454906.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	4.58	1.84	3.7	3.37	1.87	7.23	9.51	7.96	10.62
Merged-chr14-32770645-1	chr14	32770145	32771145	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15318.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	5.15	3.69	12.95	4.72	1.87	8.84	4.22	4.86	5.0
Merged-chrX-36329190-1	chrX	36328690	36329690	+	878.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028894, exon 1 of 11)	exon (NM_028894, exon 1 of 11)	781.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	8.01	3.69	1.85	6.75	6.06	3.22	6.34	8.4	5.62
Merged-chr10-20839081-3	chr10	20838598	20839598	+	877.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113449.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	26.31	18.89	25.9	38.46	27.06	19.29	27.46	37.14	16.24
Merged-chr2-73338624-3	chr2	73338131	73339131	+	877.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029022)	TTS (NM_029022)	25979.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	13.16	16.13	11.1	18.22	14.93	28.94	17.96	11.94	7.49
Merged-chr9-35268553-2	chr9	35268052	35269052	+	877.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175411)	promoter-TSS (NM_175411)	671.0	NM_028040	71989.0	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	37.76	45.16	44.4	57.35	40.12	45.01	21.12	22.99	8.74
Merged-chr13-45326154-3	chr13	45325659	45326659	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63583.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	1.14	4.15	2.77	9.45	6.06	6.43	6.34	2.21	3.75
Merged-chr13-52588023-3	chr13	52587500	52588500	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	MLT1A1|LTR|ERVL-MaLR	4563.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	45.76	81.1	80.47	79.62	78.84	89.22	81.33	70.3	50.59
Merged-chr19-44373150-3	chr19	44372653	44373653	+	877.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34556.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.72	4.15	0.92	6.07	5.6	3.22	3.17	3.1	1.25
Merged-chr5-64861507-3	chr5	64860999	64861999	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57976.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	59.49	64.05	58.27	40.48	30.32	40.19	60.2	47.75	44.34
Merged-chr2-137807773-3	chr2	137807281	137808281	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-448803.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.86	17.51	5.55	22.94	15.86	14.47	8.45	10.61	8.12
Merged-chr7-27604881-3	chr7	27604384	27605384	+	877.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007434)	promoter-TSS (NM_007434)	-913.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	9.72	11.98	18.5	9.45	7.0	20.09	94.0	109.66	79.94
Merged-chr7-47025630-2	chr7	47025148	47026148	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17234.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	6.86	8.75	1.85	15.52	4.2	9.65	16.9	7.96	2.5
Merged-chr11-113761847-2	chr11	113761347	113762347	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10032.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.72	2.76	3.7	6.75	1.4	6.43	3.17	4.86	5.62
Merged-chr10-60933006-2	chr10	60932508	60933508	+	877.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	5124.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	26.31	31.33	0.92	103.91	142.29	86.01	155.26	156.53	56.83
Merged-chr12-111426237-3	chr12	111425703	111426703	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028807, exon 8 of 13)	exon (NM_028807, exon 8 of 13)	8758.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	16.02	7.37	7.4	21.59	3.73	3.22	14.79	9.73	2.5
Merged-chr1-81059049-3	chr1	81058540	81059540	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17910.0	NM_001356399	241134.0	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	1.72	6.91	0.92	2.02	1.4	6.43	5.28	1.77	5.0
Merged-chr13-5769883-3	chr13	5769386	5770386	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88206.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	9.15	5.07	6.47	8.1	1.4	6.43	3.17	2.65	3.12
Merged-chr9-121928674-3	chr9	121928185	121929185	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	-8590.0	NR_033553	69430.0	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	4.0	6.91	3.7	5.4	0.0	1.61	7.39	2.65	5.0
Merged-chr7-128062656-3	chr7	128062159	128063159	+	877.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082960)	promoter-TSS (NM_001082960)	19.0	NM_008401	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	30.89	38.71	35.15	17.54	19.13	33.76	28.52	14.59	22.48
Merged-chr3-127625458-3	chr3	127624972	127625972	+	877.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7664.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	2.29	2.76	1.85	5.4	1.87	1.61	3.17	1.33	1.25
Merged-chr2-170507927-3	chr2	170507431	170508431	+	877.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040367, intron 1 of 2)	intron (NR_040367, intron 1 of 2)	-3299.0	NM_001110152	109054.0	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	4.0	1.84	3.7	6.07	2.33	0.0	3.17	1.77	2.5
Merged-chr13-19874989-2	chr13	19874487	19875487	+	877.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-50730.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	9.72	4.15	12.95	4.72	0.93	1.61	5.28	0.88	0.0
Merged-chr2-52483701-3	chr2	52483199	52484199	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-58825.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	8.01	7.83	12.95	5.4	6.06	5.63	7.39	2.21	7.49
Merged-chr10-67712050-3	chr10	67711534	67712534	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140075.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	48.05	33.64	27.75	53.98	23.79	26.53	34.85	48.64	43.72
Merged-chr18-57581812-3	chr18	57581321	57582321	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-29424.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	23.45	35.02	17.57	12.14	17.73	12.06	16.9	21.22	19.98
Merged-chr12-120028358-3	chr12	120027870	120028870	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82408.0	NM_001160385	217951.0	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	13.73	2.76	5.55	15.52	2.8	3.22	14.79	0.0	3.75
Merged-chrX-166946157-3	chrX	166945624	166946624	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124246.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	19.45	16.13	16.65	20.92	15.86	1.61	27.46	24.32	10.62
Merged-chr1-87901160-1	chr1	87900660	87901660	+	877.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177646, intron 3 of 29)	intron (NM_177646, intron 3 of 29)	-46861.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	6.29	2.76	1.85	10.8	7.0	9.65	7.39	0.44	2.5
Merged-chr18-69662364-3	chr18	69661864	69662864	+	877.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-263195.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	29.75	29.95	31.45	49.25	25.19	40.99	46.47	37.58	14.36
Merged-chr11-16507616-3	chr11	16507100	16508100	+	877.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011343, intron 1 of 3)	intron (NM_011343, intron 1 of 3)	884.0	NM_011343	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	176.19	169.11	106.37	174.75	117.09	115.75	167.93	150.34	90.56
Merged-chr15-81046313-3	chr15	81045793	81046793	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	58754.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	99.54	88.93	60.12	82.32	50.38	70.73	66.54	53.5	59.33
Merged-chr14-73234705-3	chr14	73234193	73235193	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-3198.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	18.31	13.82	12.95	16.87	13.53	17.68	23.24	11.94	19.98
Merged-chr10-14115177-3	chr10	14114661	14115661	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 4 of 12)	Lx9|LINE|L1	148782.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	16.59	16.13	9.25	16.87	13.53	12.06	14.79	9.73	9.99
Merged-chr13-59836236-3	chr13	59835750	59836750	+	877.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	49.77	57.14	25.9	53.98	60.65	36.17	4.22	7.96	2.5
Merged-chr18-62231587-2	chr18	62231085	62232085	+	877.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51485.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	21.17	12.44	14.8	16.19	7.0	10.45	21.12	18.57	5.0
Merged-chr7-29491221-1	chr7	29490721	29491721	+	877.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	intron (NM_001081028, intron 2 of 22)	14239.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	5.72	9.22	4.62	8.1	3.73	11.25	12.67	7.07	16.24
Merged-chr5-139378112-3	chr5	139377606	139378606	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033147, exon 1 of 1)	non-coding (NR_033147, exon 1 of 1)	409.0	NR_033147	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	94.96	61.75	60.12	101.88	77.44	85.2	92.94	95.51	46.22
Merged-chr8-126581008-3	chr8	126580512	126581512	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	12424.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	16.02	11.52	3.7	12.14	11.2	6.43	11.62	10.61	9.37
Merged-chr13-110538345-3	chr13	110537841	110538841	+	877.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143297.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	6.86	10.14	1.85	11.47	8.86	9.65	6.34	4.42	2.5
Merged-chr7-121269546-3	chr7	121269035	121270035	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122761.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.0	5.53	11.1	37.11	23.33	46.62	19.01	27.41	49.96
Merged-chr3-95282477-3	chr3	95281971	95282971	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199475)	promoter-TSS (NM_199475)	-395.0	NM_173347	229589.0	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	140.15	156.67	117.47	162.61	212.26	196.12	167.93	220.64	113.04
Merged-chr5-93152680-3	chr5	93152156	93153156	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 3 of 9)	intron (NM_001009818, intron 3 of 9)	53839.0	NM_017367	12453.0	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	17.16	21.2	12.95	3.37	4.2	3.22	11.62	7.96	11.87
Merged-chr3-100618709-1	chr3	100618209	100619209	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010763, intron 7 of 12)	intron (NM_010763, intron 7 of 12)	66764.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	9.72	17.05	11.1	16.19	16.79	8.84	3.17	9.29	5.62
Merged-chr6-137404448-1	chr6	137403948	137404948	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 12 of 26)	intron (NM_011216, intron 12 of 26)	-6273.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	2.86	5.53	0.0	3.37	3.27	8.04	4.22	1.77	6.25
Merged-chr9-37236072-3	chr9	37235585	37236585	+	877.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	19653.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	18.88	14.75	34.22	26.99	20.06	33.76	5.28	3.98	6.87
Merged-chr14-16256376-2	chr14	16255879	16256879	+	877.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021504, intron 2 of 11)	MTEb|LTR|ERVL-MaLR	-6571.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.58	10.6	7.4	6.07	3.27	4.02	10.56	3.54	6.25
Merged-chr10-58445993-1	chr10	58445493	58446493	+	877.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011240)	promoter-TSS (NM_011240)	-859.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	415.88	427.61	304.31	400.78	355.95	271.68	407.69	554.04	276.67
Merged-chr6-17065585-2	chr6	17065088	17066088	+	877.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	439.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	16.02	5.07	3.7	9.45	12.6	1.61	5.28	10.61	5.0
Merged-chr18-70478024-3	chr18	70477520	70478520	+	877.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	5354.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	6.86	4.15	3.7	3.37	5.6	4.82	1.06	6.63	3.75
Merged-chr10-96334821-3	chr10	96334341	96335341	+	877.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108634.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	24.03	30.87	15.72	34.41	48.98	39.39	24.29	26.97	18.74
Merged-chr3-79854635-2	chr3	79854141	79855141	+	877.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11979.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.29	3.23	1.85	6.07	5.6	1.61	5.28	1.77	3.75
Merged-chr10-43751092-3	chr10	43750619	43751619	+	877.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040581, intron 1 of 3)	intron (NR_040581, intron 1 of 3)	4961.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	28.6	24.88	37.0	29.69	21.46	14.47	38.02	32.28	24.98
Merged-chr13-81264759-1	chr13	81264259	81265259	+	877.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	L1PB4|LINE|L1	300685.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	2.86	7.83	11.1	12.14	12.6	16.88	6.34	4.86	7.49
Merged-chr18-61086383-3	chr18	61085889	61086889	+	877.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19183.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	53.77	56.68	74.92	72.19	64.84	67.52	96.11	82.69	63.7
Merged-chr7-140112392-5	chr7	140111912	140112912	+	877.585693	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053119, intron 3 of 7)	intron (NM_053119, intron 3 of 7)	4011.0	NM_053119	93747.0	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	28.6	23.96	51.8	35.09	35.92	36.17	44.36	42.89	30.6
Merged-chr11-103359856-3	chr11	103359359	103360359	+	877.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183288, exon 3 of 3)	3' UTR (NM_183288, exon 3 of 3)	3833.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	165.32	134.55	117.47	159.91	120.83	135.84	146.81	191.02	89.31
Merged-chr16-91561749-3	chr16	91561272	91562272	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008338, exon 6 of 7)	exon (NM_008338, exon 6 of 7)	14678.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	70.36	58.98	54.57	95.81	60.18	82.79	106.67	123.36	81.81
Merged-chr18-50036837-3	chr18	50036330	50037330	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	5846.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	44.62	56.22	57.35	41.83	25.19	40.99	23.24	17.69	20.61
Merged-chr11-53737754-3	chr11	53737263	53738263	+	877.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16969.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	10.3	9.22	17.57	18.22	10.26	12.86	16.9	18.13	13.12
Merged-chr2-34782449-5	chr2	34781874	34782874	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	intron (NM_145522, intron 6 of 7)	10284.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	13.16	3.23	2.77	5.4	4.67	3.22	6.34	2.21	4.37
Merged-chr12-3807832-2	chr12	3807335	3808335	+	877.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	675.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	46.34	38.71	82.32	62.07	44.32	71.54	126.74	62.35	38.72
Merged-chr12-35267364-1	chr12	35266864	35267864	+	877.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72467.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	28.03	30.41	13.87	33.74	49.92	57.87	8.45	5.31	8.74
Merged-chrX-23710199-3	chrX	23709710	23710710	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	17159.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	37.76	35.94	43.47	36.43	31.26	25.72	36.97	39.8	31.85
Merged-chr8-79389475-2	chr8	79388992	79389992	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	9976.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	15.45	15.67	11.1	15.52	20.53	10.45	22.18	18.57	19.36
Merged-chr6-122560539-3	chr6	122560037	122561037	+	877.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009645, intron 2 of 4)	(CA)n|Simple_repeat|Simple_repeat	6728.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	13.73	8.29	3.7	26.99	8.86	11.25	31.69	13.71	5.62
Merged-chr9-119402581-3	chr9	119402063	119403063	+	877.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001313757, exon 1 of 11)	exon (NM_001313757, exon 1 of 11)	385.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	61.78	36.86	57.35	64.1	38.72	45.01	79.21	33.16	29.35
Merged-chr4-150012722-3	chr4	150012221	150013221	+	877.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-3698.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	88.1	87.09	87.87	81.64	68.58	104.49	101.39	124.25	95.55
Merged-chr11-88950386-3	chr11	88949903	88950903	+	877.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029023, intron 2 of 12)	intron (NM_029023, intron 2 of 12)	5039.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	93.24	97.23	73.07	92.44	82.11	93.24	122.52	100.37	74.32
Merged-chr2-167716990-3	chr2	167716502	167717502	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25825.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	90.96	68.66	68.45	136.97	76.04	72.34	102.45	91.09	38.72
Merged-chr12-24592538-3	chr12	24592043	24593043	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	11824.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	41.19	36.86	22.2	25.64	51.32	27.33	46.47	49.52	28.1
Merged-chr1-170901745-3	chr1	170901250	170902250	+	877.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	11191.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	13.16	11.98	12.95	22.94	19.59	24.11	28.52	34.05	20.61
Merged-chr15-58324236-3	chr15	58323714	58324714	+	877.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177755)	promoter-TSS (NM_177755)	-45.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	55.49	63.13	37.0	103.23	107.76	47.42	50.7	65.88	29.98
Merged-chr15-77537676-1	chr15	77537176	77538176	+	877.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-4361.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	15.45	9.22	3.7	14.84	13.53	26.53	27.46	14.15	26.85
Merged-chr2-11516220-4	chr2	11515797	11516797	+	877.394409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	(CAGA)n|Simple_repeat|Simple_repeat	-14207.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	112.69	150.68	49.02	92.44	114.76	85.2	127.8	162.72	69.32
Merged-chr5-7994230-3	chr5	7993717	7994717	+	877.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	33745.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	5.72	5.07	3.7	2.02	1.87	3.22	3.17	4.42	1.87
Merged-chr7-24364982-3	chr7	24364462	24365462	+	877.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5301.0	NM_001163510	16534.0	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	7.44	7.83	1.85	6.07	3.27	11.25	2.11	2.65	2.5
Merged-chrX-96244764-3	chrX	96244258	96245258	+	877.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1941.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	27.46	24.88	11.1	13.49	11.66	31.35	19.01	23.88	8.74
Merged-chr13-102906542-3	chr13	102906049	102907049	+	877.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146294.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	21.17	13.82	22.2	19.57	13.06	11.25	29.57	17.69	6.25
Merged-chr9-57764463-3	chr9	57763986	57764986	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007713, intron 1 of 12)	CpG	1374.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	214.52	243.29	177.59	181.5	247.25	176.03	214.41	192.34	166.12
Merged-chr13-92337083-3	chr13	92336606	92337606	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	(CACCT)n|Simple_repeat|Simple_repeat	-17677.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	22.31	15.67	10.17	60.05	66.24	35.37	22.18	20.78	15.61
Merged-chr2-103965691-3	chr2	103965151	103966151	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	intron (NM_001142337, intron 1 of 3)	-3906.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	29.17	25.34	27.75	20.24	20.99	35.37	27.46	23.88	11.24
Merged-chr11-97942577-3	chr11	97942084	97943084	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163608, intron 7 of 13)	intron (NM_001163608, intron 7 of 13)	43862.0	NM_028199	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	17.16	8.75	11.1	16.19	7.93	4.82	13.73	13.71	15.61
Merged-chr17-48337030-3	chr17	48336546	48337546	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9355.0	NM_031254	83433.0	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	22.31	26.26	17.57	35.76	20.53	20.09	40.14	43.77	17.49
Merged-chr8-41319211-1	chr8	41318711	41319711	+	877.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 29 of 37)	intron (NM_023662, intron 29 of 37)	55486.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	4.58	5.07	5.55	1.35	5.13	4.02	14.79	10.61	9.99
Merged-chr9-40764207-3	chr9	40763705	40764705	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-37068.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	34.9	45.16	30.52	38.46	30.32	43.4	11.62	9.73	11.87
Merged-chr8-122913379-1	chr8	122912879	122913879	+	877.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	intron (NM_001081379, intron 3 of 12)	65005.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	19.45	12.44	17.57	33.06	21.46	20.9	26.4	25.65	21.86
Merged-chr5-24046792-3	chr5	24046280	24047280	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16090.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	72.08	68.66	60.12	58.03	65.31	80.38	73.93	57.92	38.1
Merged-chr1-184235768-3	chr1	184235270	184236270	+	877.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	201389.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	5.72	4.15	7.4	11.47	7.0	16.08	16.9	9.29	5.0
Merged-chr6-8744548-1	chr6	8744048	8745048	+	877.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 3 of 11)	intron (NM_001252266, intron 3 of 11)	13910.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.58	6.91	5.55	16.87	20.53	12.86	11.62	11.94	1.87
Merged-chr5-99297334-3	chr5	99296834	99297834	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_030692)	TTS (NR_030692)	-44407.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	80.09	70.04	68.45	122.8	86.77	70.73	66.54	57.04	34.35
Merged-chr12-34683616-3	chr12	34683111	34684111	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-154722.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	35.47	40.09	29.6	42.51	36.39	34.56	33.8	55.71	26.85
Merged-chr1-182937812-3	chr1	182937317	182938317	+	877.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16971.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	21.74	23.5	19.42	11.47	8.4	22.51	12.67	14.15	17.49
Merged-chr3-39269018-2	chr3	39268506	39269506	+	877.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	382066.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	20.59	23.04	12.95	0.0	2.33	0.0	116.18	163.6	45.59
Merged-chr6-31114518-2	chr6	31114077	31115077	+	877.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-51484.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	505.7	534.97	311.71	496.59	591.53	294.99	529.15	689.78	234.2
Merged-chr11-106160189-5	chr11	106159730	106160730	+	877.246643	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356459)	promoter-TSS (NM_001356459)	-54.0	NM_172397	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	129.86	88.01	98.05	141.02	100.3	113.33	125.69	117.17	88.06
Merged-chr4-134929794-3	chr4	134929286	134930286	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1194.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	80.09	54.83	79.55	45.21	40.59	69.93	44.36	65.0	70.57
Merged-chr8-121580649-3	chr8	121580138	121581138	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	19.45	17.05	27.75	29.01	18.66	9.65	14.79	12.82	21.86
Merged-chr16-57363148-3	chr16	57362637	57363637	+	877.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	RMER17B2|LTR|ERVK	9860.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.01	4.61	15.72	6.07	5.13	1.61	7.39	4.86	6.87
Merged-chr11-94118853-1	chr11	94118353	94119353	+	877.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025428, intron 26 of 26)	intron (NM_001025428, intron 26 of 26)	74648.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	5.72	2.76	5.55	16.19	9.8	12.06	15.84	5.31	8.74
Merged-chr7-75118266-3	chr7	75117772	75118772	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360573, intron 13 of 13)	intron (NM_001360573, intron 13 of 13)	88061.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	2.29	2.3	0.0	7.42	2.8	1.61	3.17	4.42	3.75
Merged-chr4-88309945-3	chr4	88309444	88310444	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 21 of 43)	intron (NM_001081184, intron 21 of 43)	128982.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	8.01	3.23	17.57	9.45	7.0	4.82	15.84	2.65	6.25
Merged-chr4-53439125-3	chr4	53438619	53439619	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1294.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	26.89	19.81	10.17	18.89	15.39	28.94	29.57	26.97	19.98
Merged-chr8-95149571-2	chr8	95149080	95150080	+	877.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	5.72	4.61	16.65	4.05	8.4	4.82	2.11	2.21	5.0
Merged-chr17-50390338-3	chr17	50389845	50390845	+	877.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-96725.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	12.59	20.74	16.65	15.52	14.93	11.25	68.65	61.02	29.98
Merged-chr10-88200735-3	chr10	88200241	88201241	+	877.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027487)	promoter-TSS (NM_027487)	-356.0	NM_026070	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	77.8	76.03	57.35	121.45	101.23	76.36	104.56	87.55	29.98
Merged-chr19-11234447-3	chr19	11233950	11234950	+	877.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	31701.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	6.29	8.75	7.4	26.31	15.39	26.53	12.67	13.71	10.62
Merged-chr17-26691467-3	chr17	26690962	26691962	+	877.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025272, intron 2 of 3)	intron (NM_025272, intron 2 of 3)	15066.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	12.01	15.21	5.55	17.54	6.53	14.47	11.62	12.82	7.49
Merged-chr13-95524660-1	chr13	95524160	95525160	+	877.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007974, intron 1 of 1)	CpG	580.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	1.14	2.3	5.55	2.7	3.73	3.22	9.51	7.96	1.87
Merged-chr6-129727450-2	chr6	129726951	129727951	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-10319.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	9.15	4.61	11.1	8.77	3.73	6.43	4.22	6.63	2.5
Merged-chr1-14820018-1	chr1	14819518	14820518	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-64052.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	13.73	6.45	9.25	8.1	7.93	6.43	9.51	3.54	1.25
Merged-chr17-70095863-1	chr17	70095363	70096363	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	126790.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	6.29	3.23	3.7	2.7	0.93	0.8	1.06	0.44	1.87
Merged-chr9-13300400-1	chr9	13299900	13300900	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53444.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	47.48	67.27	55.5	39.13	38.25	40.99	43.3	34.93	33.72
Merged-chr17-35270634-1	chr17	35270134	35271134	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	7511.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	11.44	7.37	5.55	4.05	1.4	4.02	8.45	4.86	9.37
Merged-chr15-96485629-1	chr15	96485129	96486129	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24786.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	5.72	3.23	1.85	8.1	3.27	0.0	3.17	0.88	2.5
Merged-chr4-109439310-1	chr4	109438810	109439810	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145948, intron 13 of 17)	ORR1D2|LTR|ERVL-MaLR	23663.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	5.72	2.76	11.1	4.05	3.73	6.43	5.28	2.65	6.25
Merged-chr17-56613916-1	chr17	56613416	56614416	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_028782)	TTS (NM_028782)	521.0	NM_018730	54217.0	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	158.46	141.46	109.14	129.55	116.16	116.55	123.57	107.45	69.32
Merged-chr18-66459772-1	chr18	66459272	66460272	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021451, intron 1 of 2)	intron (NM_021451, intron 1 of 2)	1168.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	53.77	67.74	25.9	71.52	97.97	66.71	92.94	110.54	34.35
Merged-chr11-17528053-1	chr11	17527553	17528553	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	270365.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	1.72	7.37	5.55	16.87	12.6	4.02	8.45	4.42	9.99
Merged-chr2-33426138-2	chr2	33425641	33426641	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276332, intron 1 of 1)	intron (NM_001276332, intron 1 of 1)	5183.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	8.58	9.22	7.4	17.54	9.8	16.08	10.56	12.38	14.99
Merged-chr14-75060743-3	chr14	75060237	75061237	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	44710.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	18.31	9.22	11.1	18.89	6.06	14.47	16.9	13.27	12.49
Merged-chr15-42962891-1	chr15	42962391	42963391	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207927.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.57	1.38	2.77	2.02	2.33	1.61	1.06	2.21	2.5
Merged-chrX-75874012-1	chrX	75873512	75874512	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346519, intron 1 of 16)	intron (NM_001346519, intron 1 of 16)	562.0	NM_145629	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	4.0	5.53	1.85	4.72	3.73	2.41	3.17	0.44	1.25
Merged-chr19-29047399-1	chr19	29046899	29047899	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028360)	promoter-TSS (NR_028360)	-84.0	NR_028360	67329.0	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	24.6	21.2	16.65	41.83	26.59	38.58	53.87	32.72	27.48
Merged-chr3-108123475-1	chr3	108122975	108123975	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010306, intron 3 of 8)	intron (NM_010306, intron 3 of 8)	22677.0	NM_010306	14679.0	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	6.86	14.75	5.55	13.49	14.93	10.45	13.73	13.27	11.87
Merged-chr14-79494413-3	chr14	79493923	79494923	+	877.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-13155.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	6.86	9.68	20.35	22.27	12.13	12.06	14.79	9.73	11.24
Merged-chr6-117936096-2	chr6	117935608	117936608	+	877.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033648, intron 2 of 8)	intron (NM_033648, intron 2 of 8)	1227.0	NM_001173372	108017.0	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	8.01	5.53	3.7	8.1	1.4	8.04	3.17	1.77	3.12
Merged-chr14-14606173-3	chr14	14605662	14606662	+	876.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96863.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	14.87	9.68	0.0	12.82	10.26	6.43	8.45	7.52	5.62
Merged-chr16-20694690-3	chr16	20694187	20695187	+	876.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133778)	promoter-TSS (NM_133778)	-370.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	8.01	8.29	2.77	10.12	8.4	3.22	7.39	11.05	9.99
Merged-chr15-98953307-3	chr15	98952840	98953840	+	876.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011653, intron 1 of 3)	CpG	161.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	16.02	16.59	17.57	14.84	14.0	16.08	16.9	10.61	6.87
Merged-chr15-57706069-6	chr15	57705548	57706548	+	876.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	11381.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	54.92	38.71	29.6	61.4	43.39	37.78	78.16	78.26	21.86
Merged-chr19-41989950-3	chr19	41989455	41990455	+	876.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	ID_B1|SINE|B4	8192.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	40.62	39.17	32.37	46.56	33.59	33.76	48.58	61.46	20.61
Merged-chr12-111436664-5	chr12	111436138	111437138	+	876.9366460000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6023.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	303.19	282.0	165.57	344.78	239.79	201.75	284.11	295.37	221.08
Merged-chr2-163777078-2	chr2	163776566	163777566	+	876.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	-26827.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	13.16	8.29	5.55	7.42	9.33	8.84	2.11	2.65	5.62
Merged-chr11-45624033-2	chr11	45623541	45624541	+	876.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184042.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	22.88	35.48	35.15	37.78	30.79	46.62	3.17	6.63	3.12
Merged-chr2-156840706-3	chr2	156840256	156841256	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291124, intron 1 of 3)	CpG	749.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	44.62	16.13	6.47	44.53	14.46	11.25	43.3	15.92	16.86
Merged-chr11-76631291-3	chr11	76630804	76631804	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-41166.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	51.48	52.53	44.4	78.94	55.98	36.97	86.61	94.18	43.72
Merged-chr13-81238149-3	chr13	81237646	81238646	+	876.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	274072.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.72	5.99	1.85	14.84	8.86	8.04	8.45	7.96	1.87
Merged-chrX-8893053-3	chrX	8892610	8893610	+	876.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045448, exon 1 of 1)	non-coding (NR_045448, exon 1 of 1)	757.0	NR_045448	102941.0	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	F-box and leucine-rich repeat protein 17 pseudogene	pseudo	7.44	1.84	3.7	4.72	4.67	3.22	7.39	3.1	2.5
Merged-chr9-95639045-2	chr9	95638531	95639531	+	876.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 2 of 8)	intron (NM_029620, intron 2 of 8)	1403.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	70.93	94.46	54.57	77.59	154.88	88.42	168.99	261.32	63.7
Merged-chr19-17244370-2	chr19	17243876	17244876	+	876.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	95129.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	20.59	12.44	32.37	22.94	21.93	19.29	1.06	0.88	6.25
Merged-chr1-119502710-3	chr1	119502202	119503202	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	RSINE1|SINE|B4	2080.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	22.31	22.58	39.77	16.19	11.2	16.88	25.35	21.22	16.24
Merged-chr4-152009828-3	chr4	152009333	152010333	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033352, exon 1 of 4)	exon (NM_001033352, exon 1 of 4)	942.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	199.65	182.01	73.07	234.8	312.09	148.7	147.87	149.01	89.31
Merged-chr17-35738008-3	chr17	35737500	35738500	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33401.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	5.15	4.61	0.0	2.7	1.4	4.82	10.56	6.19	8.74
Merged-chr13-52505880-3	chr13	52505385	52506385	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001024474, exon 2 of 2)	3' UTR (NM_001024474, exon 2 of 2)	24951.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	9.15	7.37	1.85	7.42	6.06	5.63	8.45	1.77	0.62
Merged-chr15-79751998-3	chr15	79751482	79752482	+	876.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045069, intron 3 of 3)	intron (NR_045069, intron 3 of 3)	9284.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	55.49	42.39	74.92	87.04	44.32	69.93	50.7	25.65	24.36
Merged-chr3-9341085-2	chr3	9340583	9341583	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61995.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	14.87	21.2	25.9	26.99	26.12	30.54	2.11	3.54	1.25
Merged-chr7-31105362-3	chr7	31104852	31105852	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110252, intron 5 of 13)	intron (NM_001110252, intron 5 of 13)	5645.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	8.01	8.29	7.4	6.75	3.73	4.82	25.35	12.38	29.98
Merged-chr4-135193032-3	chr4	135192539	135193539	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72394.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	3.43	8.29	8.32	2.7	6.53	11.25	6.34	0.88	1.87
Merged-chr2-169873615-2	chr2	169873121	169874121	+	876.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89566.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	1.72	4.15	0.0	7.42	8.86	3.22	1.06	4.42	6.25
Merged-chr6-52221782-3	chr6	52221244	52222244	+	876.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3171.0	NM_010455	15404.0	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	1.14	2.3	0.0	2.7	4.67	1.61	3.17	0.88	2.5
Merged-chr1-162646462-1	chr1	162645962	162646962	+	876.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177581)	TTS (NM_001177581)	7312.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	3.43	4.15	1.85	6.07	2.33	0.0	1.06	8.84	6.25
Merged-chr3-9199098-1	chr3	9198598	9199598	+	876.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51469.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	2.29	1.84	5.55	7.42	2.33	1.61	5.28	0.44	5.62
Merged-chr18-12154304-3	chr18	12153814	12154814	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 12 of 12)	intron (NM_024182, intron 12 of 12)	-14416.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	3.43	3.23	9.25	6.75	2.33	7.23	4.22	1.33	5.0
Merged-chr17-23804850-3	chr17	23804251	23805251	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175229, intron 1 of 13)	intron (NM_175229, intron 1 of 13)	1564.0	NM_175229	75956.0	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	107.55	142.38	100.82	78.94	70.44	78.77	107.73	143.7	86.18
Merged-chr19-4906650-3	chr19	4906139	4907139	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033128)	promoter-TSS (NM_001033128)	-12.0	NM_001033128	52028.0	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	5.72	3.69	2.77	4.72	4.2	4.82	2.11	3.1	6.87
Merged-chr13-67797764-1	chr13	67797264	67798264	+	876.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045194, intron 2 of 2)	intron (NR_045194, intron 2 of 2)	-16052.0	NM_198322	212569.0	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	1.72	2.76	0.0	3.37	4.2	4.82	12.67	7.96	14.99
Merged-chr2-164947688-3	chr2	164947182	164948182	+	876.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013599)	promoter-TSS (NM_013599)	-537.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	5.15	0.92	0.92	3.37	0.93	3.22	2.11	1.77	6.25
Merged-chr13-50418871-2	chr13	50418357	50419357	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_154272, intron 1 of 10)	RLTR30B_MM|LTR|ERV1	993.0	NR_154273	109082.0	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	27.46	24.42	31.45	22.94	26.12	28.13	55.98	55.27	32.48
Merged-chr4-9099305-2	chr4	9098800	9099800	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169993.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.0	1.84	16.65	4.05	3.27	6.43	7.39	3.1	18.74
Merged-chr6-38805844-2	chr6	38805344	38806344	+	876.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	31467.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	69.22	61.75	39.77	76.24	52.25	70.73	47.53	44.22	32.48
Merged-chr3-31060669-2	chr3	31060247	31061247	+	876.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21781.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	133.29	140.08	91.57	138.99	118.03	110.12	155.26	200.74	103.67
Merged-chr3-65653195-2	chr3	65652699	65653699	+	876.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6089.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	6.29	1.84	5.55	6.07	4.67	3.22	3.17	11.94	0.62
Merged-chr4-123664761-3	chr4	123664218	123665218	+	876.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1163.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	98.97	58.06	105.44	87.71	48.52	76.36	135.19	34.49	51.84
Merged-chr2-122132305-3	chr2	122131807	122132807	+	876.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	B4A|SINE|B4	-13921.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	10.87	13.82	24.05	8.77	13.53	19.29	13.73	8.4	9.99
Merged-chr7-96539346-4	chr7	96538814	96539814	+	876.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	L3|LINE|CR1	-197350.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	15.45	33.64	3.7	14.84	10.26	26.53	7.39	3.54	11.24
Merged-chr18-53862872-3	chr18	53862378	53863378	+	876.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	CpG	765.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	131.0	118.88	103.59	156.53	97.97	87.61	107.73	62.79	73.69
Merged-chr10-24902295-1	chr10	24901795	24902795	+	876.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027347, exon 20 of 29)	exon (NM_027347, exon 20 of 29)	-8369.0	NR_105870	102465545.0		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	2.29	5.99	7.4	4.05	7.0	0.0	28.52	30.95	39.97
Merged-chr2-128412503-3	chr2	128412011	128413011	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	16840.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	5.15	5.07	1.85	4.05	0.47	4.82	1.06	2.21	5.0
Merged-chr13-21914704-3	chr13	21914214	21915214	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17665.0	NR_035500	100316716.0		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	6.86	3.69	2.77	1.35	1.4	8.04	1.06	0.88	1.25
Merged-chr1-189792751-2	chr1	189792279	189793279	+	876.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 2 of 18)	intron (NM_008976, intron 2 of 18)	64511.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.86	2.3	5.55	6.07	5.6	3.22	1.06	5.75	1.25
Merged-chr2-117105529-3	chr2	117105048	117106048	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15523.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	99.54	108.75	56.42	94.46	87.7	99.67	99.28	77.38	64.33
Merged-chr11-82073176-3	chr11	82072666	82073666	+	876.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15334.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	9.72	5.53	3.7	2.7	2.8	8.84	3.17	4.86	3.12
Merged-chr12-117832366-3	chr12	117831872	117832872	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11489.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	9.72	5.07	14.8	7.42	3.73	5.63	5.28	3.54	6.25
Merged-chr5-134455580-3	chr5	134455093	134456093	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 1 of 29)	intron (NM_001081462, intron 1 of 29)	669.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	48.62	29.95	25.9	57.35	50.85	53.85	98.23	78.26	34.97
Merged-chr10-16621032-3	chr10	16620522	16621522	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	474760.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	2.86	7.83	12.02	4.05	3.73	10.45	5.28	4.42	3.12
Merged-chr19-9989661-3	chr19	9989147	9990147	+	876.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011913, exon 8 of 12)	exon (NM_011913, exon 8 of 12)	7001.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	14.3	3.23	1.85	8.1	2.33	7.23	8.45	1.77	12.49
Merged-chr5-33203791-3	chr5	33203290	33204290	+	876.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14448.0	NM_133903	100689.0	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	7.44	5.07	3.7	8.77	6.06	0.0	7.39	3.54	0.0
Merged-chr2-122743107-3	chr2	122742598	122743598	+	876.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	4593.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	41.19	44.7	58.27	39.81	20.99	14.47	39.08	30.07	15.61
Merged-chr1-177188942-1	chr1	177188442	177189442	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	59825.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	8.58	7.37	3.7	6.07	7.0	0.0	3.17	1.77	6.25
Merged-chr10-94345691-1	chr10	94345191	94346191	+	876.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	33742.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	2.29	4.15	0.92	0.67	1.87	7.23	14.79	30.51	12.49
Merged-chr8-128519585-1	chr8	128519085	128520085	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160344.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	2.29	3.69	3.7	4.05	2.8	1.61	2.11	1.33	1.25
Merged-chr8-127439954-1	chr8	127439454	127440454	+	876.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	ID2|SINE|ID	140302.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	4.58	3.69	1.85	3.37	0.93	7.23	50.7	30.07	19.98
Merged-chr7-122670989-3	chr7	122670482	122671482	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019430)	promoter-TSS (NM_019430)	-762.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	3.43	0.46	7.4	0.0	0.47	0.0	0.0	0.44	0.0
Merged-chr2-33870515-2	chr2	33870005	33871005	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	17441.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.15	5.07	5.55	39.13	66.24	36.17	32.74	42.89	24.36
Merged-chr1-39527646-3	chr1	39527154	39528154	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8047.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	6.29	6.45	3.7	8.77	1.87	3.22	9.51	1.33	3.12
Merged-chr13-104032700-3	chr13	104032214	104033214	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 12 of 12)	intron (NM_029447, intron 12 of 12)	76900.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	6.29	4.61	0.0	9.45	2.33	0.8	4.22	0.44	3.75
Merged-chr4-139130309-3	chr4	139129807	139130807	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163006, intron 1 of 3)	CpG	730.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	181.91	148.83	111.92	211.19	134.35	109.32	164.76	118.94	48.71
Merged-chr16-91376857-2	chr16	91376357	91377357	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	4074.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	78.37	94.0	52.72	70.85	61.58	94.85	55.98	70.75	49.96
Merged-chr2-68874655-3	chr2	68874144	68875144	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	intron (NM_001347161, intron 1 of 10)	13203.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	18.88	7.83	16.65	31.71	17.73	38.58	50.7	34.49	28.1
Merged-chr8-39955663-1	chr8	39955163	39956163	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-312985.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	21.17	13.36	15.72	13.49	12.13	16.08	1.06	0.44	12.49
Merged-chr17-64821018-2	chr17	64820536	64821536	+	876.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15035.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	5.72	2.76	1.85	9.45	3.27	4.82	1.06	2.65	5.0
Merged-chr3-144704156-3	chr3	144703651	144704651	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	16184.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	124.71	144.23	80.47	167.33	111.03	90.02	172.16	203.4	96.18
Merged-chr6-30205829-3	chr6	30205321	30206321	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	29198.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	3.43	1.84	0.0	4.05	1.4	1.61	2.11	4.42	0.0
Merged-chr5-64317429-3	chr5	64316941	64317941	+	876.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	87084.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	52.63	31.33	14.8	41.83	34.52	31.35	38.02	18.57	19.98
Merged-chr9-85497085-3	chr9	85496579	85497579	+	876.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169929.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	5.15	5.53	1.85	8.77	3.27	3.22	3.17	3.1	9.99
Merged-chr14-55497483-3	chr14	55496972	55497972	+	876.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155104, intron 17 of 38)	intron (NR_155104, intron 17 of 38)	6402.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	4.58	1.38	9.25	8.1	2.33	6.43	5.28	1.77	1.25
Merged-chr11-4527272-3	chr11	4526773	4527773	+	876.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	67542.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	27.46	33.18	12.95	27.66	17.26	38.58	11.62	12.38	21.23
Merged-chr17-26203548-3	chr17	26203038	26204038	+	876.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081069, intron 3 of 16)	CpG-6118	597.0	NM_001081069	50782.0	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	6.29	2.76	0.0	10.8	3.27	0.8	6.34	0.44	2.5
Merged-chr18-36025729-2	chr18	36025223	36026223	+	876.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 5 of 9)	L2|LINE|L2	60893.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.57	1.38	5.55	2.7	1.87	3.22	0.0	0.88	6.25
Merged-chr2-142861177-3	chr2	142860681	142861681	+	876.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	40283.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.58	6.91	7.4	11.47	6.53	1.61	9.51	10.17	5.0
Merged-chr5-24908330-3	chr5	24907823	24908823	+	876.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001170556, exon 1 of 12)	exon (NM_001170556, exon 1 of 12)	186.0	NM_001170556	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	13.73	5.99	11.1	14.17	11.66	8.84	10.56	3.54	1.25
Merged-chr11-114830244-3	chr11	114829729	114830729	+	876.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_001110337	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	22.31	11.98	9.25	26.31	18.19	25.72	24.29	22.99	22.48
Merged-chr9-78427546-3	chr9	78427057	78428057	+	876.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15680.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	58.35	45.62	53.65	87.04	80.71	114.94	91.89	101.7	94.93
Merged-chr4-59438439-6	chr4	59437906	59438906	+	876.352783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001163288, exon 1 of 17)	5' UTR (NM_001163288, exon 1 of 17)	227.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	163.04	149.75	142.44	178.13	210.86	185.68	104.56	88.43	54.33
Merged-chr8-122898656-2	chr8	122898161	122899161	+	876.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037865, exon 8 of 14)	non-coding (NR_037865, exon 8 of 14)	50287.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	25.17	26.26	21.27	29.01	22.86	30.54	35.91	22.99	23.11
Merged-chr11-120237392-3	chr11	120236897	120237897	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198423, intron 2 of 27)	CpG-2934	4450.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	27.46	20.74	47.17	14.17	9.33	12.86	57.03	33.6	29.98
Merged-chr5-140608941-3	chr5	140608442	140609442	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1601.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	77.8	53.91	102.67	73.54	76.97	133.43	133.08	70.75	53.08
Merged-chr19-6475492-3	chr19	6475013	6476013	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	56775.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	29.17	20.74	51.8	23.62	24.26	37.78	31.69	17.69	23.11
Merged-chr13-95955660-3	chr13	95955153	95956153	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63B|DNA|hAT-Blackjack	-63731.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	21.17	11.52	20.35	33.74	20.06	24.11	16.9	19.46	14.99
Merged-chr18-74402541-1	chr18	74402041	74403041	+	876.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-40078.0	NM_201600	17919.0	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	2.29	2.76	0.0	4.72	0.93	8.84	0.0	2.21	0.0
Merged-chr6-54163013-3	chr6	54162513	54163513	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-101845.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	9.15	8.29	7.4	14.17	6.06	10.45	6.34	4.42	13.12
Merged-chr17-74454507-1	chr17	74454007	74455007	+	876.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	RLTR26B_MM|LTR|ERVK	4601.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	120.13	105.52	79.55	116.05	93.3	88.42	109.84	85.78	68.07
Merged-chr1-127859256-1	chr1	127858756	127859756	+	876.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9517.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	3.43	4.15	0.0	8.77	3.73	6.43	50.7	52.18	34.97
Merged-chr18-38013924-3	chr18	38013432	38014432	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14963.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	5.15	2.76	0.92	5.4	5.6	0.0	1.06	0.0	1.25
Merged-chr10-6983050-3	chr10	6982544	6983544	+	876.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039652, intron 4 of 5)	intron (NM_001039652, intron 4 of 5)	-2579.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	14.87	11.98	14.8	8.77	16.33	20.09	6.34	7.52	9.37
Merged-chr17-88112022-3	chr17	88111535	88112535	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13477.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	36.04	26.26	5.55	51.95	32.19	35.37	52.81	25.2	12.49
Merged-chr2-93566339-3	chr2	93565772	93566772	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-76162.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	6.86	11.06	6.47	4.05	3.27	14.47	6.34	14.59	5.0
Merged-chr9-65200792-3	chr9	65200287	65201287	+	876.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13903.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	23.45	19.81	20.35	28.34	27.06	35.37	20.07	19.01	18.11
Merged-chr8-11113422-2	chr8	11112936	11113936	+	876.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105006.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	13.16	4.15	5.55	18.22	6.53	3.22	10.56	6.19	3.75
Merged-chr17-64941772-3	chr17	64941274	64942274	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-105703.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	12.01	9.68	0.0	16.19	18.66	12.06	14.79	5.75	5.0
Merged-chr19-12595679-3	chr19	12595196	12596196	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	870.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	20.59	11.98	3.7	18.89	14.46	3.22	12.67	8.84	8.74
Merged-chr2-84460122-3	chr2	84459612	84460612	+	876.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	intron (NM_001355271, intron 2 of 8)	14062.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	14.3	11.98	8.32	15.52	6.06	17.68	12.67	13.71	14.99
Merged-chr3-142618854-3	chr3	142618348	142619348	+	876.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010259, exon 11 of 11)	3' UTR (NM_010259, exon 11 of 11)	-1815.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	62.35	64.97	72.15	20.24	21.93	42.6	58.09	59.69	41.22
Merged-chr2-38536065-3	chr2	38535583	38536583	+	876.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	24207.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	21.74	10.6	5.55	20.92	17.73	6.43	9.51	5.75	2.5
Merged-chr10-45018176-3	chr10	45017615	45018615	+	876.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49099.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	68.07	77.87	46.25	114.7	83.04	65.11	51.75	75.61	19.36
Merged-chr12-100499698-1	chr12	100499198	100500198	+	876.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 2 of 19)	intron (NM_001033213, intron 2 of 19)	21124.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.72	4.15	5.55	11.47	3.27	15.27	1.06	0.88	5.0
Merged-chr8-116944618-3	chr8	116944132	116945132	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	1239.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	98.39	94.92	72.15	69.5	60.65	62.7	69.71	64.56	36.22
Merged-chr19-32071153-1	chr19	32070653	32071653	+	876.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	intron (NM_018830, intron 2 of 23)	31987.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	2.86	3.69	4.62	0.67	5.13	1.61	14.79	3.1	6.87
Merged-chr19-37504432-3	chr19	37503887	37504887	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39133.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	21.74	20.74	16.65	13.49	7.0	9.65	15.84	18.57	19.98
Merged-chr12-100277755-3	chr12	100277273	100278273	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	1164.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	13.16	9.68	4.62	10.12	0.47	8.84	5.28	1.33	2.5
Merged-chr6-124759493-3	chr6	124759011	124760011	+	876.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302642)	TTS (NM_001302642)	-3024.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	8.01	2.76	0.92	7.42	1.4	2.41	2.11	4.86	0.0
Merged-chr7-84211680-1	chr7	84211180	84212180	+	876.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59787.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	2.29	1.38	9.25	0.0	2.8	0.0	34.85	27.86	13.74
Merged-chr2-181410859-2	chr2	181410364	181411364	+	876.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13524.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	8.58	4.61	14.8	20.92	20.53	28.94	25.35	27.86	21.23
Merged-chr19-5572482-3	chr19	5571976	5572976	+	876.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4452.0	NM_001033448	381201.0	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962|beta-5	adaptor-related protein complex 5, beta 1 subunit	protein-coding	199.07	178.78	135.97	197.69	177.74	203.36	229.19	259.55	124.28
Merged-chr5-123137809-3	chr5	123137290	123138290	+	876.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4403.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	102.97	112.43	106.37	108.63	72.78	105.3	122.52	136.63	84.94
Merged-chr11-43656690-3	chr11	43656194	43657194	+	876.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25304.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	7.44	10.6	7.4	8.1	3.27	12.06	9.51	9.73	4.37
Merged-chr14-7964644-3	chr14	7964157	7965157	+	876.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007870)	TTS (NM_007870)	29525.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.57	3.23	3.7	8.1	2.33	3.22	3.17	3.1	0.0
Merged-chr17-35254923-3	chr17	35254425	35255425	+	876.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	3636.0	NR_106169	102465886.0		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	26.31	17.97	21.27	31.04	19.13	54.66	8.45	18.57	18.11
Merged-chr10-44434808-3	chr10	44434312	44435312	+	876.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23936.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	14.3	9.22	1.85	16.87	4.67	4.82	17.96	23.88	9.99
Merged-chr5-29772838-2	chr5	29772338	29773338	+	876.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359198, intron 8 of 8)	intron (NM_001359198, intron 8 of 8)	-36902.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	20.02	16.13	22.2	14.17	11.2	13.66	15.84	13.71	19.98
Merged-chr18-64594124-2	chr18	64593688	64594688	+	876.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	66812.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	12.59	9.22	7.4	15.52	6.06	9.65	5.28	3.1	3.75
Merged-chr18-82815348-3	chr18	82814822	82815822	+	876.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-40575.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	7.44	4.61	10.17	16.87	8.86	3.22	17.96	7.07	6.25
Merged-chr16-70408019-3	chr16	70407538	70408538	+	876.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	94089.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	33.18	35.02	25.9	24.96	38.72	17.68	16.9	34.93	24.98
Merged-chr12-76594365-4	chr12	76593742	76594742	+	876.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46317.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.29	5.99	1.85	12.14	5.13	12.06	7.39	5.31	5.0
Merged-chr10-118870432-3	chr10	118869943	118870943	+	876.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	110.98	85.71	37.0	113.35	65.31	41.8	64.43	55.27	21.23
Merged-chr2-102750107-1	chr2	102749607	102750607	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-3347.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	23.45	34.1	20.35	29.69	11.2	29.74	23.24	20.34	31.23
Merged-chr9-90256107-1	chr9	90255607	90256607	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	14662.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	44.62	49.76	59.2	43.86	39.19	36.97	73.93	36.26	38.1
Merged-chr15-5241920-1	chr15	5241420	5242420	+	876.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2267.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	32.04	29.03	29.6	17.54	6.53	13.66	47.53	24.76	24.98
Merged-chr3-14912171-1	chr3	14911671	14912671	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25883.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	33.18	35.02	26.82	33.74	27.99	36.17	27.46	31.84	12.49
Merged-chr12-80259429-1	chr12	80258929	80259929	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	CpG	942.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	46.34	39.17	48.1	42.51	45.25	58.68	81.33	53.94	44.97
Merged-chr5-99213586-1	chr5	99213086	99214086	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	39341.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	41.19	29.49	12.02	35.09	20.53	29.74	17.96	16.8	13.12
Merged-chr3-137992525-3	chr3	137992022	137993022	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10973.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	5.72	6.45	7.4	4.72	0.47	2.41	3.17	3.54	0.0
Merged-chr10-121470396-1	chr10	121469896	121470896	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RCHARR1|DNA|hAT-Charlie	5854.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	38.33	48.38	21.27	57.35	42.92	32.15	50.7	38.47	17.49
Merged-chr12-70991979-3	chr12	70991472	70992472	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045055, exon 4 of 4)	non-coding (NR_045055, exon 4 of 4)	17349.0	NM_011184	19167.0	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	42.9	48.84	59.2	35.76	30.79	35.37	54.92	48.64	46.22
Merged-chr9-66917590-3	chr9	66917080	66918080	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	2125.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	41.76	59.44	49.95	68.82	41.99	50.64	53.87	56.16	58.71
Merged-chr5-5319963-3	chr5	5319455	5320455	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-53887.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	144.16	149.75	90.65	56.0	73.24	41.8	123.57	138.84	106.17
Merged-chr7-109139520-1	chr7	109139020	109140020	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302205, intron 3 of 3)	intron (NM_001302205, intron 3 of 3)	30992.0	NM_001302206	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	2.86	0.92	7.4	0.0	0.47	3.22	4.22	0.44	2.5
Merged-chr11-79878326-3	chr11	79877832	79878832	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84055.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	42.9	53.45	45.32	125.5	121.76	138.25	68.65	102.14	48.09
Merged-chr8-82941610-1	chr8	82941110	82942110	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	78254.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	12.59	31.79	11.1	72.19	39.65	43.4	12.67	7.52	16.24
Merged-chr16-64756490-3	chr16	64756005	64757005	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	14434.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	4.58	4.15	1.85	6.75	6.06	4.82	7.39	3.54	12.49
Merged-chrX-50805856-1	chrX	50805356	50806356	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35515.0	NM_133729	70415.0	Mm.46254	NM_133729	ENSMUSG00000031112	Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding	4.58	2.3	0.0	4.05	8.4	1.61	2.11	1.77	0.0
Merged-chr4-132261605-3	chr4	132261103	132262103	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020273)	promoter-TSS (NM_020273)	-54.0	NM_001122992	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	77.8	69.12	72.15	85.01	66.24	78.77	122.52	83.57	67.45
Merged-chr11-50199942-1	chr11	50199442	50200442	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_011018)	TTS (NM_011018)	10878.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	8.58	5.99	8.32	3.37	1.4	12.06	6.34	3.1	6.87
Merged-chr7-80849920-2	chr7	80849410	80850410	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12198.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	12.59	3.23	3.7	8.77	2.8	7.23	7.39	4.42	2.5
Merged-chr7-105808540-3	chr7	105808038	105809038	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025301, exon 3 of 3)	3' UTR (NM_025301, exon 3 of 3)	2549.0	NM_025301	27397.0	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	6.29	7.37	3.7	6.07	8.86	6.43	10.56	9.29	5.0
Merged-chr3-30572441-1	chr3	30571941	30572941	+	876.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	27429.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	4.0	0.0	1.85	8.1	3.27	4.82	36.97	34.93	13.74
Merged-chr10-60278622-2	chr10	60278109	60279109	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	981.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	147.02	157.13	116.54	192.29	259.38	164.78	311.57	310.84	108.67
Merged-chr10-80661377-1	chr10	80660877	80661877	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4306.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	1.72	2.3	3.7	4.05	2.8	1.61	6.34	1.77	0.62
Merged-chr12-83953904-2	chr12	83953407	83954407	+	876.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023633)	TTS (NM_023633)	3299.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	8.58	7.83	2.77	11.47	7.93	14.47	15.84	15.03	12.49
Merged-chr5-140795427-2	chr5	140794915	140795915	+	876.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	35016.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	30.89	29.95	18.5	46.56	40.59	36.17	6.34	7.52	6.25
Merged-chr9-59578169-5	chr9	59577726	59578726	+	875.953308	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-111.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.43	5.07	3.7	7.42	2.33	4.82	3.17	2.65	1.87
Merged-chr3-9878999-3	chr3	9878485	9879485	+	875.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45306.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	16.02	13.82	5.55	16.87	19.59	25.72	36.97	35.82	36.22
Merged-chr2-126600691-2	chr2	126600202	126601202	+	875.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 9 of 11)	intron (NM_008230, intron 9 of 11)	17976.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	1.14	4.15	0.0	5.4	3.73	4.82	5.28	3.98	3.12
Merged-chr5-140749290-2	chr5	140748793	140749793	+	875.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173405, exon 7 of 8)	exon (NM_173405, exon 7 of 8)	25166.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	52.06	24.42	31.45	52.63	38.25	57.07	21.12	22.11	7.49
Merged-chr11-46875846-3	chr11	46875353	46876353	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65054.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.01	5.99	6.47	4.72	5.6	1.61	6.34	3.54	6.25
Merged-chr10-87839624-3	chr10	87839122	87840122	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18643.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	18.88	17.97	19.42	35.09	14.93	21.7	24.29	21.67	12.49
Merged-chr2-148686439-3	chr2	148685938	148686938	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 2 of 5)	intron (NM_001355689, intron 2 of 5)	5318.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	102.97	89.85	58.27	82.32	82.57	69.13	96.11	111.43	66.2
Merged-chr11-98772991-3	chr11	98772467	98773467	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145434, intron 1 of 7)	intron (NM_145434, intron 1 of 7)	2410.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	47.48	29.03	26.82	83.66	42.45	36.97	58.09	38.47	20.61
Merged-chr12-116461388-3	chr12	116460912	116461912	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-24308.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	29.17	46.54	24.05	32.39	37.79	53.85	47.53	48.2	38.1
Merged-chr17-23774280-3	chr17	23773779	23774779	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2677.0	NM_001357994	224613.0	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	8.58	2.3	3.7	4.72	1.4	4.02	4.22	3.1	3.75
Merged-chr16-94648133-3	chr16	94647622	94648622	+	875.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	intron (NM_001113389, intron 2 of 11)	36703.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	20.59	10.14	0.92	9.45	7.46	14.47	11.62	7.96	3.75
Merged-chr10-44449863-2	chr10	44449358	44450358	+	875.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	8890.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	26.31	38.25	21.27	32.39	31.72	33.76	24.29	23.43	33.1
Merged-chr19-37957393-3	chr19	37956883	37957883	+	875.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 21 of 53)	L1MC4|LINE|L1	86194.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	42.33	53.91	25.9	44.53	35.92	85.2	39.08	50.41	21.23
Merged-chr18-15202386-3	chr18	15201885	15202885	+	875.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50939.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	12.01	16.59	38.85	12.82	18.19	15.27	17.96	16.36	24.98
Merged-chr3-14836952-2	chr3	14836456	14837456	+	875.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-26582.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	12.01	9.22	27.75	27.66	22.86	19.29	3.17	1.33	3.12
Merged-chr2-101715837-2	chr2	101715343	101716343	+	875.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001110849, exon 10 of 10)	3' UTR (NM_001110849, exon 10 of 10)	37423.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	4.0	0.46	0.0	3.37	0.47	1.61	5.28	4.42	0.0
Merged-chr1-161496650-2	chr1	161496158	161497158	+	875.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	2001.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	29.75	31.79	14.8	17.54	9.8	9.65	16.9	25.2	14.36
Merged-chr6-120469923-3	chr6	120469366	120470366	+	875.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	6669.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	84.66	115.66	135.04	108.63	113.83	118.16	119.35	102.58	101.8
Merged-chr8-11100501-1	chr8	11100001	11101001	+	875.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92071.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	8.01	5.53	0.0	18.89	8.4	4.82	5.28	3.98	0.62
Merged-chr14-54387927-1	chr14	54387427	54388427	+	875.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	21545.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	24.6	35.48	45.32	37.11	37.79	52.25	13.73	5.75	5.0
Merged-chr4-62283616-3	chr4	62283096	62284096	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2833.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	118.99	141.0	109.14	90.41	83.04	94.04	172.16	159.62	126.78
Merged-chr18-10794039-3	chr18	10793535	10794535	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144860, intron 13 of 20)	intron (NM_144860, intron 13 of 20)	-8483.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	9.15	11.98	6.47	20.24	9.33	4.82	13.73	9.73	14.36
Merged-chr13-9638190-3	chr13	9637685	9638685	+	875.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 31 of 36)	(CA)n|Simple_repeat|Simple_repeat	125625.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	18.88	26.73	19.42	25.64	15.86	12.06	31.69	17.69	14.99
Merged-chr5-124446038-4	chr5	124445522	124446522	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	523.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	24.6	11.98	21.27	28.34	15.39	40.19	61.26	9.29	17.49
Merged-chr14-78790598-1	chr14	78790098	78791098	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57869.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	4.0	5.99	1.85	1.35	1.87	1.61	5.28	0.44	7.49
Merged-chr6-140491152-1	chr6	140490652	140491652	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	67053.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	4.0	5.07	1.85	6.07	6.06	1.61	3.17	0.88	2.5
Merged-chr2-27366388-2	chr2	27365885	27366885	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	61223.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	48.05	64.51	64.75	66.8	62.05	75.56	66.54	58.81	47.46
Merged-chr3-127293053-3	chr3	127292558	127293558	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	116000.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	7.44	7.37	3.7	7.42	7.0	8.84	35.91	27.86	24.36
Merged-chr1-138965225-1	chr1	138964725	138965725	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 1 of 21)	intron (NM_001166501, intron 1 of 21)	1516.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	17.16	26.26	14.8	22.27	17.73	7.23	28.52	34.93	22.48
Merged-chr6-128648709-3	chr6	128648145	128649145	+	875.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13740.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	21.17	15.67	32.37	16.87	17.26	25.72	11.62	15.03	11.87
Merged-chr4-59459503-2	chr4	59459011	59460011	+	875.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Zaphod|DNA|hAT-Tip100	-20878.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	10.3	6.45	2.77	10.12	9.8	12.06	22.18	11.94	8.74
Merged-chr13-108268013-3	chr13	108267490	108268490	+	875.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-48347.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	16.59	10.14	1.85	8.1	9.33	8.04	5.28	14.59	9.99
Merged-chr15-81810294-3	chr15	81809811	81810811	+	875.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	-1103.0	NM_017376	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	187.06	210.12	148.92	167.33	200.13	149.5	215.46	265.74	134.27
Merged-chr16-10965173-3	chr16	10964672	10965672	+	875.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 2 of 3)	intron (NM_019980, intron 2 of 3)	27949.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	12.01	17.51	11.1	22.27	7.93	17.68	14.79	5.75	11.24
Merged-chr4-95716343-3	chr4	95715826	95716826	+	875.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	136905.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	7.44	3.69	3.7	4.72	3.27	4.02	4.22	1.33	8.74
Merged-chr2-73511204-1	chr2	73510704	73511704	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	RSINE1|SINE|B4	18283.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	52.06	54.83	41.62	55.33	28.46	47.42	59.15	52.18	32.48
Merged-chr1-24677901-1	chr1	24677401	24678401	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026719)	promoter-TSS (NM_026719)	-643.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	93.82	82.48	36.07	85.01	72.31	96.45	102.45	79.15	38.1
Merged-chr19-21319759-1	chr19	21319259	21320259	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	47481.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	4.0	2.3	7.4	3.37	2.8	9.65	2.11	0.88	3.75
Merged-chr17-35165748-1	chr17	35165248	35166248	+	875.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-871.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	337.51	322.55	160.94	259.09	230.92	184.07	214.41	308.63	143.02
Merged-chr3-145729747-3	chr3	145729255	145730255	+	875.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28937.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	2.29	3.23	5.55	9.45	4.2	10.45	9.51	1.77	5.0
Merged-chr13-56129773-1	chr13	56129273	56130273	+	875.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159513, intron 1 of 8)	MLT1J2|LTR|ERVL-MaLR	5777.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.58	4.15	11.1	11.47	3.27	6.43	12.67	10.61	3.75
Merged-chr2-165388273-2	chr2	165387759	165388759	+	875.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178411)	promoter-TSS (NM_178411)	0.0	NM_178411	228876.0	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	16.59	3.23	3.7	10.8	7.0	0.0	7.39	3.98	9.37
Merged-chr7-101450110-3	chr7	101449610	101450610	+	875.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243758)	promoter-TSS (NM_001243758)	-410.0	NM_001243758	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	11.44	5.99	26.82	24.29	6.53	15.27	4.22	4.86	7.49
Merged-chr2-167715212-3	chr2	167714704	167715704	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24027.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	22.88	16.13	49.02	41.16	21.46	29.74	27.46	17.24	14.36
Merged-chr10-53914169-3	chr10	53913627	53914627	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 11 of 12)	intron (NM_008548, intron 11 of 12)	161669.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	5.15	15.67	7.4	10.8	7.0	3.22	9.51	6.63	9.99
Merged-chr14-75016598-3	chr14	75016110	75017110	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198642, intron 1 of 13)	intron (NM_198642, intron 1 of 13)	583.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	107.55	100.91	91.57	119.43	89.57	89.22	181.66	133.53	63.08
Merged-chr13-10251973-3	chr13	10251483	10252483	+	875.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	L1MC1|LINE|L1	108820.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	11.44	6.91	9.25	10.8	2.33	9.65	7.39	12.38	13.74
Merged-chr2-52988079-2	chr2	52987579	52988579	+	875.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	130211.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	27.46	38.71	34.22	47.9	50.85	32.96	24.29	23.43	9.99
Merged-chr10-81464540-2	chr10	81464042	81465042	+	875.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176954, intron 9 of 11)	CpG-1367	8589.0	NM_001311127	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	4.0	0.0	0.0	1.35	0.47	3.22	2.11	2.65	0.0
Merged-chr5-115300369-3	chr5	115299868	115300868	+	875.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131932)	promoter-TSS (NR_131932)	622.0	NM_019682	56455.0	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	45.19	47.46	34.22	53.3	29.39	45.01	32.74	31.39	21.86
Merged-chr8-36265411-3	chr8	36264919	36265919	+	875.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15903.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	14.3	17.51	13.87	10.12	8.86	4.82	10.56	4.86	5.0
Merged-chr15-51696909-3	chr15	51696402	51697402	+	875.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168559.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	4.58	4.15	0.0	6.75	0.93	1.61	0.0	0.44	2.5
Merged-chrX-61659316-3	chrX	61658822	61659822	+	875.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-50294.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	10.3	11.98	8.32	6.75	8.86	16.08	30.63	24.76	9.99
Merged-chr16-97996198-2	chr16	97995706	97996706	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-1109.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	65.79	82.48	80.47	35.76	49.92	70.73	72.88	72.96	54.33
Merged-chr17-5885653-1	chr17	5885153	5886153	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	44273.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	15.45	17.05	23.12	14.17	16.33	11.25	16.9	4.86	7.49
Merged-chr3-96578359-3	chr3	96577867	96578867	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001293701, exon 7 of 7)	3' UTR (NM_001293701, exon 7 of 7)	-11566.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	73.22	45.16	52.72	71.52	31.26	59.48	52.81	47.31	41.84
Merged-chr15-102243605-3	chr15	102243071	102244071	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011244, intron 3 of 9)	intron (NM_011244, intron 3 of 9)	2929.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	20.59	17.05	37.92	7.42	4.67	33.76	26.4	14.15	16.24
Merged-chr13-46975144-1	chr13	46974644	46975644	+	875.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	39706.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	2.86	3.69	2.77	1.35	2.33	4.82	10.56	8.4	8.12
Merged-chr7-71379146-1	chr7	71378646	71379646	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-530549.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	2.86	3.23	2.77	2.02	4.67	3.22	0.0	1.77	0.62
Merged-chr7-28671347-3	chr7	28670859	28671859	+	875.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-21490.0	NM_207238	233040.0	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	12.59	10.6	29.6	12.14	9.8	15.27	15.84	7.07	7.49
Merged-chr4-86679967-1	chr4	86679467	86680467	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9908.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	2.86	1.84	3.7	5.4	5.6	6.43	0.0	0.44	1.25
Merged-chr8-119832572-1	chr8	119832072	119833072	+	875.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8007.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	20.59	13.36	1.85	18.89	10.26	24.92	21.12	8.84	24.98
Merged-chr5-110815648-3	chr5	110815122	110816122	+	875.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5541.0	NM_001347394	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	7.44	11.52	20.35	8.1	7.93	25.72	5.28	2.65	9.99
Merged-chr2-150874748-3	chr2	150874249	150875249	+	875.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	29982.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	21.74	17.97	15.72	28.34	16.33	10.45	32.74	21.67	13.74
Merged-chr14-74906176-3	chr14	74905680	74906680	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	41697.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	11.44	11.52	11.1	20.24	10.26	17.68	30.63	15.92	15.61
Merged-chr11-116986211-3	chr11	116985722	116986722	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	67359.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	2.29	2.3	10.17	8.1	4.2	4.82	8.45	10.17	3.12
Merged-chr4-118992014-3	chr4	118991522	118992522	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30055.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	4.58	3.69	3.7	6.07	3.73	2.41	5.28	0.88	3.12
Merged-chr10-80922168-3	chr10	80921701	80922701	+	875.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3956.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	9.72	12.44	6.47	9.45	10.26	5.63	14.79	9.29	5.0
Merged-chr1-193200708-3	chr1	193200202	193201202	+	875.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153137, intron 2 of 15)	intron (NM_153137, intron 2 of 15)	844.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	31.46	27.65	24.05	26.99	21.93	20.9	29.57	40.24	23.73
Merged-chr2-122376467-2	chr2	122375971	122376971	+	875.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7553.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	98.39	163.58	114.69	80.97	111.5	106.9	126.74	145.03	98.68
Merged-chr5-117115616-2	chr5	117115113	117116113	+	875.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122666, intron 1 of 12)	CpG	380.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	161.89	157.59	186.84	170.7	127.82	183.26	196.45	122.04	93.05
Merged-chr10-84060754-1	chr10	84060254	84061254	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	39943.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	7.44	1.84	5.55	6.75	4.2	4.02	11.62	5.31	5.62
Merged-chr10-68075569-1	chr10	68075069	68076069	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	95999.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	21.74	18.43	11.1	24.29	14.93	34.56	8.45	1.77	2.5
Merged-chr2-112433553-3	chr2	112433033	112434033	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21492.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	19.45	16.59	12.02	24.96	25.66	21.7	14.79	23.88	14.36
Merged-chr17-32738643-3	chr17	32738143	32739143	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	48904.0	NM_001346705	208292.0	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	8.01	5.53	3.7	16.87	17.26	12.86	40.14	24.76	19.98
Merged-chr1-156014917-1	chr1	156014417	156015417	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	19900.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	58.92	61.75	57.35	48.58	36.39	38.58	71.82	77.38	28.73
Merged-chr2-122637839-3	chr2	122637343	122638343	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004174)	promoter-TSS (NM_001004174)	-44.0	NM_001004174	433470.0	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	4.58	3.23	1.85	2.7	1.87	4.82	6.34	0.44	2.5
Merged-chr4-6453066-2	chr4	6452539	6453539	+	875.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1232.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	181.34	207.35	118.39	176.1	184.74	153.52	196.45	282.1	143.02
Merged-chr10-51414738-3	chr10	51414250	51415250	+	875.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65862.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	9.72	5.53	3.7	10.12	7.0	1.61	21.12	12.82	5.0
Merged-chr18-37908250-3	chr18	37907737	37908737	+	875.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305980, intron 1 of 27)	intron (NM_001305980, intron 1 of 27)	27239.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	10.3	10.14	0.0	8.77	6.06	9.65	6.34	3.54	1.25
Merged-chr5-34634679-4	chr5	34634214	34635214	+	875.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026660, intron 8 of 12)	intron (NM_026660, intron 8 of 12)	2498.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	30.89	23.04	27.75	26.99	19.59	27.33	22.18	25.2	19.36
Merged-chr16-50449290-3	chr16	50448794	50449794	+	875.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-16828.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	8.58	8.75	5.55	8.1	7.93	9.65	12.67	4.86	6.87
Merged-chr18-35927666-4	chr18	35927162	35928162	+	875.2916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37168.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	8.58	3.69	1.85	14.17	5.13	4.82	7.39	1.77	2.5
Merged-chr4-59044952-3	chr4	59044462	59045462	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	9806.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	30.89	16.59	9.25	33.06	11.2	6.43	7.39	7.07	6.25
Merged-chr17-67431024-3	chr17	67430531	67431531	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76540.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.87	6.45	8.32	3.37	5.6	6.43	8.45	4.86	3.75
Merged-chr11-101582252-3	chr11	101581764	101582764	+	875.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	22.0	NM_144830	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	181.34	142.84	137.82	149.11	111.96	112.53	170.05	183.5	96.18
Merged-chr19-5793183-5	chr19	5792618	5793618	+	875.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	2863.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	24.03	10.14	16.65	18.22	7.93	5.63	8.45	3.54	9.37
Merged-chr12-102663623-2	chr12	102663102	102664102	+	875.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	21418.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	6.29	14.28	9.25	16.19	6.53	24.11	10.56	5.75	6.25
Merged-chr2-136680013-1	chr2	136679513	136680513	+	875.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33437.0	NM_011428	20614.0	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	2.86	5.53	3.7	15.52	18.66	14.47	2.11	1.77	1.25
Merged-chr2-50642417-3	chr2	50641910	50642910	+	875.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-267274.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	10.87	5.07	0.0	8.1	7.93	8.04	9.51	5.75	5.0
Merged-chr7-34957999-3	chr7	34957495	34958495	+	875.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	45588.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	18.31	14.28	14.8	15.52	14.46	8.84	22.18	7.52	3.75
Merged-chr18-24709494-3	chr18	24708996	24709996	+	875.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175276, exon 1 of 27)	5' UTR (NM_175276, exon 1 of 27)	873.0	NM_001289655	225288.0	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	2.29	1.84	0.0	5.4	1.87	6.43	5.28	0.0	1.25
Merged-chr18-46963255-3	chr18	46962754	46963754	+	875.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	4378.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	39.47	40.55	29.6	53.98	65.31	62.7	41.19	49.08	60.58
Merged-chr13-51417956-3	chr13	51417467	51418467	+	875.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010101, intron 1 of 1)	intron (NM_010101, intron 1 of 1)	9349.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	9.72	3.69	14.8	14.84	6.06	11.25	7.39	10.17	9.37
Merged-chr10-79983878-3	chr10	79983373	79984373	+	875.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359632, intron 1 of 9)	intron (NM_001359632, intron 1 of 9)	387.0	NM_001359632	216157.0	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	75.51	35.94	62.9	72.19	27.99	77.97	89.78	58.81	45.59
Merged-chr15-100743475-3	chr15	100742987	100743987	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10750.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	7.44	4.61	7.4	9.45	6.06	6.43	14.79	10.61	8.74
Merged-chr18-32394543-3	chr18	32394039	32395039	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-16255.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	12.01	12.9	12.95	15.52	11.66	16.08	16.9	4.42	19.98
Merged-chr1-107564811-3	chr1	107564328	107565328	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-25178.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	4.0	9.68	3.7	6.75	3.27	1.61	4.22	2.21	2.5
Merged-chr4-128983487-3	chr4	128982990	128983990	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9734.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	139.01	131.32	104.52	138.99	98.43	109.32	153.15	170.23	90.56
Merged-chr2-51305344-6	chr2	51304817	51305817	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63486.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	58.92	69.12	18.5	41.83	45.72	27.33	59.15	43.77	11.87
Merged-chr5-137741547-3	chr5	137741035	137742035	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347505)	promoter-TSS (NM_001347505)	-367.0	NM_001347505	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	5.15	5.07	8.32	9.45	3.73	1.61	3.17	3.1	2.5
Merged-chr2-146402950-2	chr2	146402444	146403444	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109060.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	10.87	4.15	9.25	11.47	4.67	6.43	3.17	1.33	1.25
Merged-chrX-94169525-3	chrX	94169030	94170030	+	875.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	43121.0	NM_012010	26905.0	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	0.0	2.76	3.7	2.02	1.87	0.0	1.06	0.44	4.37
Merged-chr2-152729724-2	chr2	152729209	152730209	+	875.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	33.75	23.5	7.4	9.45	4.2	4.02	7.39	19.01	12.49
Merged-chr1-128749976-2	chr1	128749451	128750451	+	875.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-157652.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.72	9.22	12.95	12.14	10.26	26.53	8.45	2.21	1.87
Merged-chr17-74341674-2	chr17	74341150	74342150	+	875.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357738, intron 1 of 15)	Lx9|LINE|L1	2663.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	21.74	12.44	12.95	37.78	23.79	24.11	129.91	131.32	61.2
Merged-chr16-44811761-3	chr16	44811251	44812251	+	875.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8977.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	68.65	53.45	37.0	47.9	65.78	38.58	52.81	42.01	13.12
Merged-chr18-5945187-3	chr18	5944686	5945686	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190912.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	14.87	12.44	3.7	58.03	44.32	57.87	8.45	11.94	9.99
Merged-chr6-125046880-3	chr6	125046361	125047361	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133345, intron 2 of 7)	intron (NM_133345, intron 2 of 7)	2992.0	NR_130997	78202.0	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	Gm43989	RIKEN cDNA 4930557K07 gene	ncRNA	7.44	6.45	11.1	3.37	2.8	10.45	8.45	7.07	3.12
Merged-chr9-38718303-3	chr9	38717826	38718826	+	875.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172767)	promoter-TSS (NM_172767)	58.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	57.21	71.88	49.95	44.53	70.44	62.7	68.65	82.24	32.48
Merged-chr3-122295718-3	chr3	122295238	122296238	+	875.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2035.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	12.59	13.36	3.7	9.45	15.39	9.65	6.34	7.96	5.0
Merged-chr11-120150529-3	chr11	120150027	120151027	+	875.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	824.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	147.59	136.39	104.52	138.99	85.84	90.83	159.48	169.79	69.95
Merged-chr1-152903784-2	chr1	152903297	152904297	+	875.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG-603	-1151.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	379.27	447.42	175.74	309.02	303.7	188.89	259.82	374.07	169.87
Merged-chr8-115618372-5	chr8	115617834	115618834	+	875.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	88560.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	73.79	71.88	51.8	76.24	63.45	66.71	91.89	75.17	65.58
Merged-chr15-100598978-3	chr15	100598498	100599498	+	875.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304965, intron 1 of 10)	intron (NM_001304965, intron 1 of 10)	986.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	134.43	124.41	112.84	118.08	128.76	78.77	89.78	122.48	94.3
Merged-chr19-5801169-3	chr19	5800664	5801664	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	1508.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	212.8	202.28	150.77	178.8	146.02	131.02	236.59	237.0	132.4
Merged-chr13-37742448-3	chr13	37741944	37742944	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83594.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	16.02	15.67	12.02	22.27	21.46	16.08	32.74	21.22	13.74
Merged-chr12-16588822-3	chr12	16588329	16589329	+	875.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130412, intron 1 of 20)	intron (NM_001130412, intron 1 of 20)	941.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	74.94	76.03	49.02	76.24	60.18	45.82	32.74	15.92	6.87
Merged-chr8-35557029-3	chr8	35556529	35557529	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30769.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	21.17	29.03	23.12	25.64	24.26	43.4	48.58	56.6	27.48
Merged-chr2-6872331-1	chr2	6871831	6872831	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-296.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	1.14	1.84	0.0	4.05	0.0	4.02	3.17	1.33	2.5
Merged-chr7-98711213-1	chr7	98710713	98711713	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	7966.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	50.34	40.09	47.17	93.11	66.24	48.23	55.98	68.09	46.84
Merged-chr10-7850234-1	chr10	7849734	7850734	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	13853.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	47.48	57.14	83.25	49.25	30.79	35.37	25.35	12.82	24.36
Merged-chr3-8789956-1	chr3	8789456	8790456	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB2_1A-I_MM-int|LTR|ERVK	-122918.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	3.43	7.83	8.32	12.14	8.86	13.66	2.11	5.75	13.74
Merged-chr17-31118739-1	chr17	31118239	31119239	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009593)	TTS (NM_009593)	10872.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	3.43	0.92	9.25	2.02	0.93	13.66	3.17	2.65	6.25
Merged-chrX-93602417-1	chrX	93601917	93602917	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008892, intron 10 of 36)	Lx5c|LINE|L1	29738.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	4.0	7.83	7.4	8.77	1.87	4.82	4.22	4.42	4.37
Merged-chr15-63996698-1	chr15	63996198	63997198	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	1368.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	23.45	16.13	8.32	18.89	19.13	24.92	24.29	31.39	23.73
Merged-chr3-41523682-1	chr3	41523182	41524182	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130791, intron 1 of 5)	RSINE1|SINE|B4	4792.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	4.0	1.84	2.77	11.47	7.46	8.04	2.11	0.88	2.5
Merged-chr6-53713316-2	chr6	53712821	53713821	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	107504.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	8.58	5.07	10.17	13.49	5.6	5.63	1.06	3.54	1.25
Merged-chr18-23753671-3	chr18	23753181	23754181	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162941)	promoter-TSS (NM_001162941)	-44.0	NM_001162941	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	69.22	44.24	9.25	47.23	27.99	4.82	49.64	31.39	11.24
Merged-chr8-66494996-1	chr8	66494496	66495496	+	875.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8466.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	24.03	15.67	11.1	24.96	12.6	12.06	43.3	24.32	14.36
Merged-chr7-127386836-1	chr7	127386336	127387336	+	875.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030226, exon 1 of 3)	exon (NM_030226, exon 1 of 3)	330.0	NM_030226	78921.0	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	20.02	16.13	7.4	24.96	34.99	51.44	42.25	38.47	28.1
Merged-chr16-3744901-2	chr16	3744406	3745406	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	807.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	188.78	276.47	140.59	267.19	293.43	245.16	264.05	312.17	153.01
Merged-chr15-101373662-1	chr15	101373162	101374162	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_028770	74127.0	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	10.3	16.13	11.1	29.01	22.86	28.13	9.51	5.31	6.25
Merged-chr1-16295033-1	chr1	16294533	16295533	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189151.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	2.86	5.99	3.7	8.1	7.0	6.43	8.45	1.33	2.5
Merged-chr13-101712202-1	chr13	101711702	101712702	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-19572.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.58	8.29	1.85	4.05	7.46	15.27	4.22	7.96	4.37
Merged-chr13-25562918-1	chr13	25562418	25563418	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-292922.0	NM_009513	22360.0	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	3.43	2.76	4.62	3.37	1.87	1.61	2.11	2.21	4.37
Merged-chr5-38082009-2	chr5	38081505	38082505	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	42775.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	37.18	42.85	33.3	21.59	28.46	20.9	42.25	49.08	48.71
Merged-chr10-67098000-1	chr10	67097500	67098500	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	76.08	91.7	33.3	123.47	92.84	54.66	100.34	106.56	36.22
Merged-chr13-60712704-1	chr13	60712204	60713204	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	MER58A|DNA|hAT-Charlie	73660.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	10.87	9.68	14.8	22.27	20.53	13.66	8.45	8.4	3.75
Merged-chr11-117654105-2	chr11	117653614	117654614	+	875.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198022)	promoter-TSS (NM_198022)	-175.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	69.79	47.46	48.1	84.34	64.84	69.13	54.92	35.82	29.35
Merged-chr10-40314771-1	chr10	40314271	40315271	+	875.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12583.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	9.72	6.91	8.32	7.42	5.13	9.65	8.45	3.98	1.25
Merged-chr5-134458891-3	chr5	134458416	134459416	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2200.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	40.04	25.8	30.52	51.95	41.99	64.3	77.1	46.87	33.72
Merged-chr10-81404906-3	chr10	81404329	81405329	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008688, exon 8 of 10)	exon (NM_008688, exon 8 of 10)	-4746.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	22.88	13.82	1.85	35.76	16.33	37.78	34.85	19.9	38.1
Merged-chr13-69534115-3	chr13	69533603	69534603	+	874.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001169131)	promoter-TSS (NM_001169131)	-239.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	81.8	44.7	61.05	79.62	50.85	98.87	68.65	36.7	30.6
Merged-chr19-6067159-3	chr19	6066662	6067662	+	874.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081041)	TTS (NM_001081041)	688.0	NM_028454	73166.0	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	21.17	15.67	18.5	16.19	20.53	45.82	21.12	15.92	22.48
Merged-chr2-164389749-3	chr2	164389240	164390240	+	874.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252563, intron 10 of 10)	CpG	-13454.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	5.15	2.3	7.4	5.4	1.4	2.41	2.11	1.77	1.25
Merged-chr13-28417701-3	chr13	28417205	28418205	+	874.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	275221.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.57	3.23	1.85	13.49	8.86	1.61	8.45	2.21	2.5
Merged-chr1-120099659-2	chr1	120099155	120100155	+	874.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21264.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	1.72	3.23	7.4	4.72	2.33	1.61	43.3	20.78	26.85
Merged-chr9-119949016-3	chr9	119948505	119949505	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028735, intron 9 of 28)	intron (NM_028735, intron 9 of 28)	11399.0	NM_028735	74052.0	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	9.72	1.84	1.85	3.37	7.46	2.41	2.11	1.77	3.12
Merged-chr2-118390260-3	chr2	118389767	118390767	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	MER46C|DNA|TcMar-Tigger	1155.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	58.92	67.27	36.07	38.46	45.25	55.46	120.41	119.83	48.71
Merged-chr11-5012463-3	chr11	5011974	5012974	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	25650.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	32.04	38.71	49.02	49.93	46.18	57.07	31.69	33.6	33.72
Merged-chr17-43327958-3	chr17	43327475	43328475	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32456.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	6.86	8.29	5.55	20.24	26.59	24.11	38.02	36.26	24.98
Merged-chr2-12085679-3	chr2	12085186	12086186	+	874.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-215560.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	21.17	23.5	19.42	18.89	19.59	16.08	21.12	15.92	14.36
Merged-chr2-157082020-4	chr2	157081485	157082485	+	874.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2720.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	50.91	37.78	34.22	51.95	37.79	49.83	76.05	43.77	32.48
Merged-chr16-11070161-4	chr16	11069690	11070690	+	874.7937619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009223, intron 1 of 1)	intron (NM_009223, intron 1 of 1)	3892.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	48.62	41.47	49.95	43.86	31.72	32.15	42.25	27.41	21.86
Merged-chr8-68951963-3	chr8	68951475	68952475	+	874.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	71420.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	20.59	19.81	12.95	37.78	22.39	25.72	70.76	74.28	27.48
Merged-chr10-81498273-3	chr10	81497766	81498766	+	874.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010102, exon 1 of 1)	3' UTR (NM_010102, exon 1 of 1)	1871.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	6.86	2.3	4.62	14.17	7.93	4.82	8.45	12.38	24.98
Merged-chr4-12490627-1	chr4	12490127	12491127	+	874.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-318612.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.86	4.15	5.55	12.14	11.66	19.29	4.22	2.21	3.75
Merged-chr9-82871572-3	chr9	82871057	82872057	+	874.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081216, exon 40 of 40)	exon (NM_001081216, exon 40 of 40)	41751.0	NM_001168240	65099.0	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	17.73	20.74	23.12	17.54	23.79	23.31	11.62	14.59	16.24
Merged-chr1-192094650-2	chr1	192094136	192095136	+	874.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2037.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	8.01	4.15	7.4	7.42	2.33	3.22	3.17	0.88	3.75
Merged-chr2-166195204-3	chr2	166194705	166195705	+	874.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39522.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	9.72	11.06	5.55	14.84	5.13	16.08	14.79	13.71	12.49
Merged-chr16-31570962-3	chr16	31570447	31571447	+	874.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47186.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	5.72	5.53	3.7	5.4	4.67	4.82	4.22	2.65	5.0
Merged-chr1-13336061-3	chr1	13335561	13336561	+	874.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	36368.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	30.32	23.96	25.9	31.04	14.93	19.29	21.12	18.57	23.11
Merged-chr15-38458477-1	chr15	38457977	38458977	+	874.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32070.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	1.72	2.3	0.0	6.75	3.27	3.22	3.17	2.65	1.25
Merged-chr16-28914415-1	chr16	28913915	28914915	+	874.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	15283.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.0	1.38	12.95	0.0	1.4	0.0	13.73	6.63	5.0
Merged-chr19-9991453-3	chr19	9990949	9991949	+	874.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 6 of 11)	ID_B1|SINE|B4	8803.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	10.3	4.61	4.62	4.72	3.73	1.61	3.17	1.77	5.0
Merged-chr18-73814706-1	chr18	73814206	73815206	+	874.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145494, intron 1 of 15)	intron (NM_145494, intron 1 of 15)	686.0	NM_145494	107029.0	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	52.63	33.64	31.45	49.93	44.78	49.03	137.3	104.79	34.97
Merged-chr11-118980551-3	chr11	118980050	118981050	+	874.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-7631.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	24.03	9.22	9.25	30.36	11.2	11.25	13.73	14.15	5.0
Merged-chr15-94683876-2	chr15	94683384	94684384	+	874.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	54699.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	5.72	3.69	5.55	14.17	11.2	12.86	23.24	19.01	27.48
Merged-chr14-118181020-3	chr14	118180520	118181520	+	874.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43893.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	34.32	49.3	20.35	40.48	48.05	33.76	30.63	36.26	30.6
Merged-chr2-57330948-3	chr2	57330448	57331448	+	874.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	92566.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	17.73	22.58	24.05	18.89	27.99	11.25	24.29	19.9	25.61
Merged-chr3-105894920-3	chr3	105894424	105895424	+	874.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-9497.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	234.54	222.56	123.02	240.2	191.27	170.4	231.3	253.8	148.64
Merged-chr11-83058952-3	chr11	83058444	83059444	+	874.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-6168.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	41.76	43.31	62.9	51.95	25.19	55.46	73.93	66.33	41.84
Merged-chr2-36232227-3	chr2	36231757	36232757	+	874.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	1831.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	47.48	67.27	51.8	103.23	86.3	63.5	136.25	133.98	53.08
Merged-chr17-23746988-3	chr17	23746415	23747415	+	874.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1086.0	NM_028416	73016.0	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	20.59	8.29	12.02	10.12	6.53	8.04	6.34	2.21	12.49
Merged-chr10-63460537-3	chr10	63460041	63461041	+	874.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164376, intron 1 of 17)	intron (NM_001164376, intron 1 of 17)	3030.0	NM_001164376	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	6.86	3.23	5.55	4.72	1.4	0.0	6.34	2.21	2.5
Merged-chr15-75642460-3	chr15	75641963	75642963	+	874.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	25779.0	NM_011759	22701.0	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	6.86	8.75	0.0	15.52	12.13	8.84	7.39	7.96	6.25
Merged-chr19-32754873-3	chr19	32754382	32755382	+	874.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2695.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	22.88	11.52	5.55	9.45	7.0	7.23	11.62	9.29	14.36
Merged-chr5-115508925-3	chr5	115508419	115509419	+	874.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	2243.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	73.22	101.37	110.07	86.36	79.77	127.0	105.62	92.41	115.54
Merged-chrX-106015714-3	chrX	106015214	106016214	+	874.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025379)	promoter-TSS (NM_025379)	14.0	NM_025379	66142.0	Mm.197728	NM_025379	ENSMUSG00000031231	Cox7b	1100001F07Rik|1110004F07Rik|C80563	cytochrome c oxidase subunit VIIb	protein-coding	37.18	45.62	37.92	49.93	54.11	50.64	50.7	33.16	21.86
Merged-chr11-70790043-2	chr11	70789561	70790561	+	874.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001045526)	TTS (NM_001045526)	22500.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	104.11	94.46	74.0	82.32	61.11	77.97	89.78	103.02	86.81
Merged-chr16-21666687-1	chr16	21666187	21667187	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	27978.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	15.45	11.06	6.47	23.62	20.06	16.88	6.34	9.73	9.99
Merged-chr2-156312115-2	chr2	156311605	156312605	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-368.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	463.36	425.76	366.28	352.2	312.09	240.33	391.84	402.81	256.06
Merged-chr6-13839338-3	chr6	13838837	13839837	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145066, intron 1 of 3)	intron (NM_145066, intron 1 of 3)	605.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	29.17	17.51	14.8	33.74	22.39	24.11	26.4	20.34	18.11
Merged-chr2-165060104-2	chr2	165059611	165060611	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	RSINE1|SINE|B4	4475.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	3.43	5.53	0.0	9.45	5.13	0.8	30.63	37.14	17.49
Merged-chr14-70333795-1	chr14	70333295	70334295	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144808, intron 1 of 9)	intron (NM_144808, intron 1 of 9)	14638.0	NM_001135152	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	7.44	2.3	9.25	3.37	0.47	3.22	5.28	2.65	4.37
Merged-chr10-94597862-3	chr10	94597362	94598362	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11663.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	8.01	4.15	15.72	7.42	6.06	6.43	9.51	6.63	8.74
Merged-chr2-21676819-2	chr2	21676308	21677308	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	309241.0	NM_001004761	241263.0	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	11.44	8.29	1.85	1.35	4.2	5.63	3.17	1.33	3.75
Merged-chr17-70122276-1	chr17	70121776	70122776	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	153203.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	5.72	5.53	5.55	12.82	10.73	14.47	7.39	6.63	2.5
Merged-chr2-35661543-2	chr2	35661031	35662031	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001114125, exon 3 of 17)	exon (NM_001114125, exon 3 of 17)	-30463.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.43	1.38	0.0	0.0	1.87	4.82	1.06	1.33	2.5
Merged-chr4-134922369-3	chr4	134921870	134922870	+	874.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	109.83	112.43	112.84	66.8	38.72	69.93	100.34	106.56	79.94
Merged-chr7-97246620-1	chr7	97246120	97247120	+	874.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	79344.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	20.02	15.21	19.42	22.27	15.39	26.53	13.73	11.05	10.62
Merged-chr2-22790582-3	chr2	22790075	22791075	+	874.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	16248.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	40.04	37.32	46.25	43.86	34.06	32.96	64.43	52.62	28.1
Merged-chr5-62843496-3	chr5	62843004	62844004	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	Tigger5b|DNA|TcMar-Tigger	29681.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	32.04	27.19	16.65	43.86	27.52	24.11	36.97	35.82	34.35
Merged-chr17-28433223-3	chr17	28432734	28433734	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 3 of 10)	B4A|SINE|B4	52915.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	20.59	18.43	17.57	24.29	18.19	23.31	23.24	34.05	27.48
Merged-chr8-3648984-3	chr8	3648486	3649486	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6784.0	NM_001204959	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	7.44	21.2	10.17	7.42	15.39	33.76	25.35	22.11	17.49
Merged-chr10-83921433-3	chr10	83920934	83921934	+	874.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179263.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	35.47	24.88	15.72	51.28	24.26	26.53	54.92	49.52	33.1
Merged-chr5-31004404-3	chr5	31003900	31004900	+	874.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35723.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	2.29	4.15	3.7	1.35	0.93	6.43	4.22	2.21	1.25
Merged-chr13-81125351-3	chr13	81124859	81125859	+	874.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	161285.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	20.59	13.36	9.25	23.62	17.73	15.27	14.79	13.71	16.24
Merged-chr5-117348439-2	chr5	117347938	117348938	+	874.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033311, intron 7 of 9)	intron (NM_001033311, intron 7 of 9)	-8867.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	5.15	3.69	1.85	9.45	2.8	4.82	2.11	1.33	0.62
Merged-chr10-4601770-3	chr10	4601231	4602231	+	874.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10258.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	66.36	30.87	43.47	59.38	19.59	54.66	46.47	18.13	33.72
Merged-chr5-110603384-3	chr5	110602835	110603835	+	874.3999630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122639)	promoter-TSS (NM_001122639)	-170.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	1.72	3.69	5.55	2.02	6.06	4.82	2.11	0.0	2.5
Merged-chr16-90995375-3	chr16	90994950	90995950	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045515, intron 2 of 32)	intron (NM_001045515, intron 2 of 32)	15645.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	90.96	81.1	66.6	91.09	59.71	81.18	95.06	95.95	51.21
Merged-chr16-8766375-3	chr16	8765891	8766891	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28049.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	8.58	12.9	12.95	14.84	15.39	17.68	12.67	17.69	13.74
Merged-chr4-82858554-3	chr4	82858063	82859063	+	874.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149737, intron 1 of 7)	intron (NR_149737, intron 1 of 7)	1110.0	NR_149737	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	18.31	17.05	14.8	21.59	3.73	3.22	38.02	27.41	21.23
Merged-chr11-111067037-3	chr11	111066530	111067530	+	874.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	866.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	60.64	52.07	44.4	45.21	47.58	50.64	61.26	61.46	34.97
Merged-chr11-111165117-3	chr11	111164607	111165607	+	874.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98943.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	24.6	25.8	27.75	24.29	30.32	38.58	22.18	28.3	19.36
Merged-chr12-112578871-2	chr12	112578377	112579377	+	874.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9907.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	9.15	5.99	3.7	11.47	5.13	9.65	8.45	6.19	6.87
Merged-chr6-54171904-1	chr6	54171404	54172404	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-92954.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	5.72	2.76	0.0	8.1	5.6	3.22	5.28	3.98	1.25
Merged-chr9-31543538-1	chr9	31543038	31544038	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79300.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	2.86	2.3	0.0	4.72	2.33	0.0	0.0	1.33	4.37
Merged-chr1-82924811-3	chr1	82924293	82925293	+	874.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85333.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	5.15	6.91	17.57	14.17	10.26	16.08	5.28	10.61	1.25
Merged-chr3-83822016-1	chr3	83821516	83822516	+	874.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	19592.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.58	5.53	6.47	15.52	12.13	16.08	11.62	4.86	3.75
Merged-chr14-76748896-1	chr14	76748396	76749396	+	874.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11235.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	0.57	4.15	4.62	4.72	1.4	2.41	5.28	1.77	2.5
Merged-chr9-115314001-1	chr9	115313501	115314501	+	874.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-3580.0	NM_024222	68292.0	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	5.72	1.84	1.85	1.35	3.27	4.82	58.09	66.33	46.22
Merged-chr8-82997056-3	chr8	82996554	82997554	+	874.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	133698.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.86	12.44	3.7	20.24	11.2	17.68	12.67	7.07	9.37
Merged-chr18-32816825-3	chr18	32816307	32817307	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033206)	promoter-TSS (NR_033206)	-53.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	30.32	27.19	20.35	19.57	19.13	19.29	13.73	18.57	14.36
Merged-chr19-46991320-3	chr19	46990805	46991805	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-21738.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.0	4.61	1.85	2.02	1.4	0.8	7.39	0.88	0.0
Merged-chr16-87585780-3	chr16	87585265	87586265	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144854, intron 4 of 4)	L1MB8|LINE|L1	32435.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	6.86	5.53	4.62	16.19	16.79	36.97	11.62	1.77	11.24
Merged-chr17-72919352-3	chr17	72918938	72919938	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	CpG	1133.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	93.24	77.41	66.6	77.59	76.04	94.04	66.54	76.49	49.96
Merged-chr2-5392597-3	chr2	5392109	5393109	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13219.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	72.08	66.35	49.02	74.89	44.32	20.9	115.12	108.33	51.21
Merged-chr5-134180010-3	chr5	134179502	134180502	+	874.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3235.0	NM_033572	94254.0	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	11.44	2.3	2.77	4.05	2.33	0.0	2.11	2.65	3.75
Merged-chr16-32813136-3	chr16	32812648	32813648	+	874.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2702.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	18.88	8.75	6.47	12.82	10.26	7.23	10.56	0.44	6.25
Merged-chr9-61513482-1	chr9	61512982	61513982	+	874.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	141116.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	9.72	17.51	14.8	22.27	20.06	20.09	7.39	8.84	4.37
Merged-chr15-66708736-3	chr15	66708221	66709221	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 22 of 47)	MIRc|SINE|MIR	37951.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	5.72	3.69	3.7	7.42	4.2	1.61	3.17	1.33	2.5
Merged-chr14-103929993-3	chr14	103929506	103930506	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85530.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	20.59	10.6	13.87	16.87	21.93	16.08	11.62	11.05	8.12
Merged-chr16-95704201-3	chr16	95703720	95704720	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	1813.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	25.74	33.64	12.95	22.94	20.99	12.06	32.74	13.71	23.11
Merged-chr15-6909826-3	chr15	6909361	6910361	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35548.0	NM_001310469	18414.0	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	2.86	4.15	3.7	4.05	4.2	0.0	3.17	0.44	2.5
Merged-chr4-10912815-3	chr4	10912295	10913295	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38297.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	1.72	3.23	7.4	1.35	4.2	1.61	4.22	5.75	0.0
Merged-chr1-134418659-3	chr1	134418161	134419161	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306069, intron 1 of 7)	intron (NM_001306069, intron 1 of 7)	2997.0	NM_001306069	72674.0	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	87.52	99.07	61.97	49.93	63.45	94.04	59.15	74.73	69.95
Merged-chr6-5208028-3	chr6	5207530	5208530	+	874.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14084.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.15	4.61	7.4	6.75	6.06	4.82	3.17	3.98	4.37
Merged-chr15-68060690-5	chr15	68060169	68061169	+	874.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	198187.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	106.4	116.58	62.9	165.98	123.16	98.06	136.25	171.56	68.07
Merged-chr19-11061045-3	chr19	11060551	11061551	+	874.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-10485.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	27.46	49.3	34.22	33.06	25.19	61.89	47.53	24.32	24.98
Merged-chr10-43919194-3	chr10	43918668	43919668	+	874.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152603, intron 4 of 7)	intron (NR_152603, intron 4 of 7)	17361.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	5.15	2.76	3.7	4.72	2.8	7.23	8.45	3.54	2.5
Merged-chr9-90234002-3	chr9	90233512	90234512	+	874.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	36757.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	108.69	128.56	94.35	132.92	80.24	118.96	144.7	126.9	75.57
Merged-chr4-144996006-1	chr4	144995506	144996506	+	874.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	102869.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	9.72	11.98	12.95	21.59	24.72	12.86	9.51	8.4	8.12
Merged-chr3-14381783-2	chr3	14381279	14382279	+	874.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18662.0	NR_033591	622229.0	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	1.14	1.84	0.0	3.37	1.87	5.63	2.11	1.33	3.75
Merged-chr6-115507571-2	chr6	115507075	115508075	+	874.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-37129.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	18.88	12.44	7.4	12.14	14.46	9.65	21.12	9.73	15.61
Merged-chr10-79883850-3	chr10	79883332	79884332	+	874.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011178)	TTS (NM_011178)	-2480.0	NM_015779	50701.0	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	73.79	30.87	37.0	56.68	39.65	50.64	61.26	57.92	38.1
Merged-chr19-34519426-3	chr19	34518919	34519919	+	874.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8055.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	103.54	116.12	86.02	113.35	90.97	117.35	127.8	118.94	84.94
Merged-chr15-7906661-2	chr15	7906158	7907158	+	874.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081402, intron 13 of 17)	intron (NM_001081402, intron 13 of 17)	91108.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	8.58	9.68	18.5	15.52	24.26	17.68	10.56	4.86	1.25
Merged-chr18-61570964-3	chr18	61570540	61571540	+	874.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357500, intron 4 of 9)	intron (NM_001357500, intron 4 of 9)	15767.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	58.35	90.31	74.0	55.33	47.58	78.77	50.7	53.94	59.33
Merged-chr12-108893434-4	chr12	108892884	108893884	+	874.1041869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177602)	promoter-TSS (NM_177602)	-173.0	NM_011710	22375.0	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	92.1	131.78	86.02	49.25	62.51	72.34	97.17	96.39	43.72
Merged-chr9-62510744-2	chr9	62510258	62511258	+	874.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175484, intron 1 of 11)	MLT1J|LTR|ERVL-MaLR	26286.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	2.29	3.23	2.77	6.07	3.27	8.04	5.28	3.1	7.49
Merged-chr6-108784960-3	chr6	108784447	108785447	+	874.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026011, intron 1 of 6)	MIRb|SINE|MIR	1888.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	20.59	14.75	12.95	23.62	14.0	15.27	13.73	14.59	16.24
Merged-chr11-3137463-3	chr11	3136972	3137972	+	874.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	intron (NM_030207, intron 22 of 32)	13451.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	37.76	47.46	101.74	80.97	70.44	112.53	6.34	1.77	113.66
Merged-chr13-100145344-3	chr13	100144870	100145870	+	874.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	20515.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	22.88	28.57	49.02	22.94	15.86	43.4	30.63	17.69	21.86
Merged-chr1-191850952-3	chr1	191850444	191851444	+	874.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29471.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	36.04	34.1	36.07	37.11	34.06	32.15	44.36	46.43	26.23
Merged-chr16-30024872-3	chr16	30024378	30025378	+	874.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045878, intron 3 of 3)	intron (NR_045878, intron 3 of 3)	14601.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	8.58	10.6	19.42	14.17	6.53	18.49	23.24	17.69	17.49
Merged-chr4-136056246-3	chr4	136055746	136056746	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-2875.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	3.43	4.15	11.1	11.47	3.27	3.22	6.34	3.1	8.12
Merged-chr1-91099064-3	chr1	91098566	91099566	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	45622.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	14.87	12.44	5.55	6.07	5.13	19.29	6.34	8.84	3.12
Merged-chr19-32954419-3	chr19	32953914	32954914	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196837.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	16.02	20.27	23.12	17.54	14.93	15.27	27.46	25.65	26.85
Merged-chr15-28413729-3	chr15	28413208	28414208	+	874.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	209942.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	19.45	15.67	9.25	7.42	10.26	11.25	20.07	13.27	11.24
Merged-chr17-50469286-3	chr17	50468797	50469797	+	874.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40250.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	74.94	92.62	38.85	41.16	43.85	39.39	34.85	50.41	42.47
Merged-chr12-111386697-3	chr12	111386174	111387174	+	874.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8956.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	12.59	1.84	3.7	16.87	3.73	4.02	7.39	1.77	2.5
Merged-chr3-108895820-3	chr3	108895321	108896321	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5813.0	NM_001165965	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	14.3	5.99	1.85	6.75	7.0	1.61	11.62	8.4	12.49
Merged-chr11-117191697-1	chr11	117191197	117192197	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7964.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	10.3	5.53	29.6	6.75	4.67	5.63	17.96	10.17	7.49
Merged-chr15-83496089-1	chr15	83495589	83496589	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357953, intron 9 of 11)	intron (NM_001357953, intron 9 of 11)	14818.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.57	3.23	1.85	6.75	4.2	4.82	0.0	2.21	5.0
Merged-chr6-135980990-2	chr6	135980493	135981493	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	192518.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	3.43	2.3	3.7	2.02	7.93	5.63	10.56	7.52	3.75
Merged-chr1-82816196-2	chr1	82815676	82816676	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23284.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	5.72	5.07	2.77	4.05	7.0	3.22	3.17	1.77	6.25
Merged-chr2-90581322-1	chr2	90580822	90581822	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008982)	promoter-TSS (NM_008982)	-675.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	63.5	56.68	27.75	70.17	34.06	49.83	80.27	41.12	29.35
Merged-chr2-16310872-1	chr2	16310372	16311372	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45432.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	4.0	3.23	0.0	6.75	4.67	0.0	3.17	3.1	5.0
Merged-chr2-113645906-3	chr2	113645410	113646410	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-39180.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	18.88	16.59	23.12	20.24	9.8	12.06	7.39	16.36	6.87
Merged-chr2-11398600-1	chr2	11398100	11399100	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040615)	promoter-TSS (NR_040615)	-100.0	NR_040615	77543.0	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	9.72	8.29	7.4	16.19	8.86	8.04	11.62	8.4	5.0
Merged-chr13-95685903-2	chr13	95685402	95686402	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 14 of 35)	intron (NM_027711, intron 14 of 35)	-11018.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	9.72	5.53	0.0	8.77	9.33	14.47	1.06	3.54	3.75
Merged-chr6-120463865-3	chr6	120463358	120464358	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	661.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	93.82	95.38	106.37	118.08	131.09	177.64	132.02	104.79	83.69
Merged-chr13-58160448-1	chr13	58159948	58160948	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048060, intron 3 of 3)	intron (NM_001048060, intron 3 of 3)	2799.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	6.86	4.15	5.55	6.07	1.87	8.04	5.28	1.33	1.25
Merged-chr9-13312972-1	chr9	13312472	13313472	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66016.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	9.15	9.68	3.7	14.17	9.8	11.25	3.17	0.88	8.74
Merged-chr1-59465413-2	chr1	59464905	59465905	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16742.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	17.16	13.82	3.7	19.57	12.6	12.86	11.62	9.73	5.0
Merged-chr10-37290245-3	chr10	37289731	37290731	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151305.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	10.3	11.98	9.25	16.87	11.2	15.27	12.67	7.52	11.87
Merged-chr8-22496820-1	chr8	22496320	22497320	+	874.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	B2_Mm1a|SINE|B2	-19941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	2.29	0.46	0.0	2.02	0.93	0.0	9.51	5.31	8.12
Merged-chr13-21722490-1	chr13	21721990	21722990	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178200)	TTS (NM_178200)	446.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	27.46	36.4	25.9	19.57	24.72	29.74	66.54	50.85	44.97
Merged-chr3-37502744-3	chr3	37502230	37503230	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021343, intron 14 of 15)	intron (NM_021343, intron 14 of 15)	82780.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	104.11	127.64	76.77	6.75	13.06	21.7	12.67	13.27	13.74
Merged-chr5-135630690-1	chr5	135630190	135631190	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1964.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	3.43	1.38	0.0	8.1	1.87	2.41	10.56	4.86	1.87
Merged-chr9-120068334-2	chr9	120067833	120068833	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-37.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	50.34	26.73	48.1	63.42	33.59	47.42	10.56	13.27	6.25
Merged-chr6-147606895-1	chr6	147606395	147607395	+	874.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025911, exon 12 of 13)	exon (NM_025911, exon 12 of 13)	-83346.0	NR_033636	100039727.0	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761	RIKEN cDNA 1700049E15 gene	ncRNA	5.15	2.76	11.1	1.35	6.06	6.43	2.11	5.75	5.0
Merged-chr2-13409961-3	chr2	13409508	13410508	+	874.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	81868.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	2.86	4.15	3.7	3.37	5.13	3.22	1.06	3.1	1.25
Merged-chr15-12037435-3	chr15	12036919	12037919	+	873.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41412.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	5.15	11.06	0.0	2.7	4.67	6.43	4.22	5.75	7.49
Merged-chr7-45068110-3	chr7	45067620	45068620	+	873.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163684, intron 1 of 8)	B2_Mm2|SINE|B2	5691.0	NM_025533	66394.0	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	8.01	5.53	7.4	7.42	5.13	4.82	5.28	5.31	2.5
Merged-chr7-3442864-3	chr7	3442395	3443395	+	873.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18233.0	NM_133183	54378.0	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	6.86	9.22	7.4	8.1	3.73	8.04	8.45	4.42	16.24
Merged-chr1-13424712-3	chr1	13424219	13425219	+	873.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-50636.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	7.44	9.68	9.25	11.47	6.06	6.43	12.67	13.27	5.0
Merged-chr1-92753887-2	chr1	92753394	92754394	+	873.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-77751.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	19.45	13.36	20.35	21.59	7.93	22.51	9.51	8.84	16.24
Merged-chr8-123319876-3	chr8	123319324	123320324	+	873.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1248.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	5.15	5.07	7.4	3.37	1.87	3.22	6.34	4.86	9.99
Merged-chr5-64231053-3	chr5	64230568	64231568	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	711.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	270.01	254.81	148.92	304.97	293.9	237.12	348.54	358.6	154.88
Merged-chr12-3238846-3	chr12	3238291	3239291	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 4 of 6)	intron (NR_015551, intron 4 of 6)	3000.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	25.17	33.18	26.82	26.99	13.06	26.53	29.57	19.46	18.11
Merged-chr2-117087714-3	chr2	117087234	117088234	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33337.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	24.6	33.18	22.2	22.94	16.33	16.88	21.12	15.03	27.48
Merged-chr10-59578200-3	chr10	59577646	59578646	+	873.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	38546.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	6.86	11.52	7.4	26.99	11.2	9.65	15.84	9.73	7.49
Merged-chr13-93977259-4	chr13	93976703	93977703	+	873.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-80593.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	14.3	11.52	12.95	10.8	8.86	22.51	15.84	9.29	11.24
Merged-chr2-148478489-3	chr2	148477975	148478975	+	873.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34940.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	23.45	20.27	16.65	7.42	4.67	2.41	4.22	2.65	2.5
Merged-chr6-26304393-3	chr6	26303922	26304922	+	873.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	372996.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.29	6.91	14.8	6.07	5.13	9.65	7.39	3.98	2.5
Merged-chr2-164953430-2	chr2	164952930	164953930	+	873.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013599, intron 11 of 12)	CpG	5211.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	5.15	3.23	0.0	4.72	4.67	1.61	7.39	3.1	3.75
Merged-chr2-155273503-1	chr2	155273003	155274003	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2861.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	2.29	8.75	5.55	11.47	7.46	25.72	7.39	6.63	4.37
Merged-chr15-67992651-1	chr15	67992151	67993151	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	266205.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.43	1.84	0.0	8.1	3.73	1.61	3.17	3.54	11.87
Merged-chr9-96535868-2	chr9	96535332	96536332	+	873.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-57157.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	26.89	33.18	33.3	18.22	48.52	54.66	33.8	57.92	36.22
Merged-chr14-54433720-3	chr14	54433228	54434228	+	873.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008608, intron 1 of 9)	intron (NM_008608, intron 1 of 9)	2130.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	5.72	10.14	12.95	10.12	7.46	8.04	17.96	7.96	8.12
Merged-chr19-16142650-3	chr19	16142159	16143159	+	873.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	9828.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	48.05	55.75	41.62	49.25	36.39	46.62	40.14	35.37	33.72
Merged-chr3-51359118-5	chr3	51358566	51359566	+	873.820007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18422.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	28.03	17.97	29.6	18.89	13.06	6.43	26.4	14.59	9.99
Merged-chr1-173401613-3	chr1	173401106	173402106	+	873.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18998.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.58	4.61	1.85	4.72	3.73	1.61	1.06	2.65	1.87
Merged-chr8-90881029-3	chr8	90880531	90881531	+	873.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-51218.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	24.03	24.88	16.65	14.84	5.13	12.86	10.56	10.61	8.74
Merged-chr12-112800672-3	chr12	112800153	112801153	+	873.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8322.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	5.15	3.23	2.77	3.37	2.8	0.8	1.06	1.33	1.25
Merged-chr11-106657086-3	chr11	106656591	106657591	+	873.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-44161.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	30.32	17.51	18.5	29.69	13.53	26.53	12.67	9.73	8.74
Merged-chr14-47533851-3	chr14	47533353	47534353	+	873.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34581.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	7.44	5.07	5.55	6.75	6.53	4.82	71.82	76.94	59.33
Merged-chr7-99053062-3	chr7	99052564	99053564	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	RLTR25B|LTR|ERVK	88080.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	164.75	147.91	97.12	180.15	116.63	101.28	102.45	113.64	61.2
Merged-chr1-61649230-3	chr1	61648725	61649725	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	10401.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	5.15	8.29	5.55	24.29	18.66	14.47	3.17	3.1	1.25
Merged-chr13-51418747-3	chr13	51418241	51419241	+	873.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010101, exon 2 of 2)	5' UTR (NM_010101, exon 2 of 2)	10123.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	18.31	7.37	10.17	7.42	0.47	5.63	6.34	3.54	1.25
Merged-chr19-40722546-2	chr19	40722034	40723034	+	873.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62764.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	19.45	11.06	8.32	11.47	7.46	19.29	4.22	8.84	11.24
Merged-chr17-48408562-2	chr17	48408040	48409040	+	873.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110832, intron 1 of 9)	intron (NM_001110832, intron 1 of 9)	1280.0	NM_001110832	18044.0	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	48.05	47.0	37.92	35.76	27.06	30.54	32.74	28.3	31.85
Merged-chr1-176933423-3	chr1	176932929	176933929	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 14 of 18)	intron (NM_001357390, intron 14 of 18)	-97296.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.58	3.69	2.77	6.75	2.33	6.43	4.22	6.19	9.99
Merged-chr5-135010713-3	chr5	135010199	135011199	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145215, intron 2 of 5)	intron (NM_145215, intron 2 of 5)	1243.0	NR_033794	68758.0	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	84.09	87.09	67.52	89.74	48.98	79.58	184.83	195.0	60.58
Merged-chr18-20645447-3	chr18	20644963	20645963	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	RMER5|LTR|ERV1	-19787.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	27.46	24.42	9.25	62.75	55.98	20.09	50.7	54.83	14.36
Merged-chr11-86582394-3	chr11	86581939	86582939	+	873.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	1719.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	243.69	257.12	200.71	272.59	254.25	204.97	279.89	301.56	156.76
Merged-chr18-11353232-1	chr18	11352732	11353732	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-280044.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	52.06	53.45	24.05	80.97	105.43	73.14	13.73	13.71	13.74
Merged-chr1-164218280-1	chr1	164217780	164218780	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007976, intron 24 of 24)	intron (NM_007976, intron 24 of 24)	-30766.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	2.86	4.15	5.55	7.42	3.73	3.22	2.11	1.33	12.49
Merged-chr6-136451089-3	chr6	136450588	136451588	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35519.0	NM_001201390	100502936.0	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	55.49	55.75	54.57	47.23	46.65	34.56	70.76	58.81	46.84
Merged-chr8-125337035-1	chr8	125336535	125337535	+	873.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	155798.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.43	2.3	7.4	2.02	1.4	1.61	9.51	3.54	6.25
Merged-chr9-45229530-3	chr9	45228997	45229997	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	-25422.0	NM_145403	214523.0	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	12.59	7.37	5.55	7.42	3.73	11.25	7.39	5.31	3.75
Merged-chr10-88578829-3	chr10	88578347	88579347	+	873.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252372, intron 2 of 28)	intron (NM_001252372, intron 2 of 28)	26305.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	29.75	35.94	26.82	51.28	52.72	31.35	73.93	80.92	33.72
Merged-chr3-84440105-1	chr3	84439605	84440605	+	873.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	39386.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	1.14	2.3	5.55	8.77	3.27	4.82	1.06	1.77	3.75
Merged-chr1-58669882-3	chr1	58669337	58670337	+	873.6277470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347056, intron 7 of 13)	intron (NM_001347056, intron 7 of 13)	17196.0	NR_045007	100504501.0	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	26.89	20.74	9.25	8.77	8.86	9.65	16.9	10.17	16.24
Merged-chr11-106510317-3	chr11	106509818	106510818	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 10 of 11)	B1_Mur4|SINE|Alu	9327.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	20.59	18.43	23.12	26.99	13.06	19.29	17.96	20.78	21.23
Merged-chr8-26104679-3	chr8	26104180	26105180	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 2 of 21)	intron (NM_207659, intron 2 of 21)	14544.0	NM_207659	320191.0	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	51.48	64.51	41.62	58.03	62.98	61.09	73.93	91.09	64.33
Merged-chr11-78751661-3	chr11	78751149	78752149	+	873.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197989)	promoter-TSS (NM_197989)	80.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	28.03	36.86	37.0	43.86	36.39	45.82	51.75	55.71	16.86
Merged-chr2-147023791-3	chr2	147023315	147024315	+	873.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	intron (NM_001356402, intron 1 of 28)	10816.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	30.89	32.25	49.02	20.24	27.52	30.54	34.85	35.37	22.48
Merged-chr2-119359649-2	chr2	119359157	119360157	+	873.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8415.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	37.18	44.7	42.55	19.57	27.06	32.15	1.06	3.1	5.0
Merged-chr9-62838035-3	chr9	62837536	62838536	+	873.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033175)	promoter-TSS (NM_001033175)	-751.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	72.08	67.27	59.2	78.94	65.31	83.59	88.72	87.99	56.83
Merged-chr4-130520400-3	chr4	130519895	130520895	+	873.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53641.0	NM_025998	67149.0	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	6.29	2.76	1.85	7.42	0.93	6.43	3.17	0.88	3.75
Merged-chr2-73892190-3	chr2	73891663	73892663	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025093, intron 1 of 14)	CpG	476.0	NM_001284371	11909.0	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	100.68	88.93	86.02	74.22	84.44	63.5	98.23	71.19	54.96
Merged-chr3-130818898-3	chr3	130818395	130819395	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88497.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	2.86	3.23	3.7	9.45	2.33	2.41	5.28	2.65	1.25
Merged-chr5-110447988-3	chr5	110447476	110448476	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001142642, exon 1 of 19)	exon (NM_001142642, exon 1 of 19)	527.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	135.0	88.01	83.25	116.05	63.91	78.77	116.18	70.75	76.19
Merged-chr18-80150171-3	chr18	80149677	80150677	+	873.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175028, intron 1 of 3)	intron (NM_175028, intron 1 of 3)	1305.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	43.48	50.23	26.82	61.4	62.98	53.05	64.43	81.8	39.35
Merged-chr19-5692331-3	chr19	5691805	5692805	+	873.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022012, intron 3 of 11)	intron (NM_022012, intron 3 of 11)	3174.0	NM_022012	26403.0	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	114.98	80.18	110.99	70.17	52.25	112.53	79.21	84.9	76.19
Merged-chr13-51307782-1	chr13	51307282	51308282	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100836.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	6.29	4.61	4.62	10.12	12.6	16.08	2.11	1.77	1.25
Merged-chr16-38093224-1	chr16	38092724	38093724	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-3964.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	39.47	40.55	27.75	50.6	36.39	53.85	70.76	59.69	19.98
Merged-chr6-29279159-3	chr6	29278659	29279659	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1982.0	NM_001101486	245884.0	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	13.16	13.36	11.1	11.47	12.6	17.68	11.62	11.05	13.74
Merged-chr5-72241727-1	chr5	72241227	72242227	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 4 of 22)	intron (NR_003966, intron 4 of 22)	38384.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	10.87	12.44	14.8	16.87	9.8	20.9	16.9	8.84	8.74
Merged-chr11-62007523-2	chr11	62007076	62008076	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	50813.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	42.9	47.46	47.17	56.0	61.58	48.23	38.02	39.35	36.85
Merged-chr1-37029336-3	chr1	37028917	37029917	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-89890.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	20.59	23.04	5.55	23.62	14.0	9.65	39.08	37.58	16.24
Merged-chr11-116071603-3	chr11	116071116	116072116	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009573, intron 13 of 32)	intron (NM_001009573, intron 13 of 32)	6345.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	14.87	11.06	24.05	8.77	7.93	16.88	15.84	17.69	18.74
Merged-chr12-113098130-2	chr12	113097638	113098638	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054081)	promoter-TSS (NM_054081)	-140.0	NM_001346696	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	12.01	6.91	13.87	17.54	9.33	8.04	19.01	4.86	5.62
Merged-chr13-52580567-3	chr13	52580049	52581049	+	873.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-2888.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	36.04	42.39	49.95	26.31	27.06	47.42	40.14	26.53	29.98
Merged-chr2-133407932-1	chr2	133407432	133408432	+	873.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144227.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	8.58	7.37	5.55	6.07	3.73	3.22	4.22	3.98	3.12
Merged-chr13-19843573-2	chr13	19843088	19844088	+	873.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19331.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	19.45	17.05	17.57	12.82	10.26	20.9	7.39	2.21	10.62
Merged-chr17-30137316-3	chr17	30136808	30137808	+	873.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151442, intron 2 of 3)	L1M3|LINE|L1	132269.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	8.01	10.6	5.55	16.87	14.46	19.29	14.79	12.38	13.74
Merged-chr2-117231450-3	chr2	117230956	117231956	+	873.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18283.0	NM_026620	68215.0	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	10.3	3.69	0.0	9.45	3.73	9.65	6.34	2.65	5.0
Merged-chr7-45638837-1	chr7	45638337	45639337	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152217)	promoter-TSS (NR_152217)	-79.0	NR_152217	100126243.0	Mm.440600	NR_152217	ENSMUSG00000110357	A030001D20Rik	1110025D03Rik	RIKEN cDNA A030001D20 gene	ncRNA	2.86	1.38	1.85	6.75	3.73	4.82	7.39	2.65	1.25
Merged-chr7-130969261-1	chr7	130968761	130969761	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019564, intron 3 of 8)	intron (NM_019564, intron 3 of 8)	33058.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	10.87	12.44	1.85	4.05	5.13	3.22	9.51	3.54	5.0
Merged-chr9-20901621-1	chr9	20901121	20902121	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3031.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	5.72	2.3	4.62	11.47	7.93	0.8	9.51	1.33	4.37
Merged-chr12-119371512-3	chr12	119371019	119372019	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71891.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	31.46	29.95	18.5	22.94	21.46	20.9	34.85	40.68	33.1
Merged-chr7-25006801-1	chr7	25006301	25007301	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290469)	promoter-TSS (NM_001290469)	-864.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	2.86	1.38	1.85	0.0	2.8	1.61	0.0	0.44	3.75
Merged-chr6-87804937-3	chr6	87804440	87805440	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	4817.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	65.21	76.03	37.92	68.82	60.65	59.48	68.65	95.95	57.46
Merged-chr18-34140076-3	chr18	34139580	34140580	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-80904.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	29.17	23.96	34.22	23.62	10.73	24.92	34.85	22.11	23.73
Merged-chr8-95832836-3	chr8	95832320	95833320	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20671.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	11.44	4.15	0.0	7.42	5.6	2.41	2.11	2.21	1.87
Merged-chr11-50291563-3	chr11	50291048	50292048	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	788.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	457.07	511.01	339.46	398.08	427.32	327.95	415.08	436.42	325.38
Merged-chr7-114294127-1	chr7	114293627	114294627	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18011.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	6.86	17.51	32.37	21.59	20.06	35.37	12.67	1.77	9.99
Merged-chr3-136708443-3	chr3	136707948	136708948	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	38382.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	43.48	43.77	44.4	33.06	28.92	43.4	55.98	51.73	31.23
Merged-chr2-127831920-3	chr2	127831434	127832434	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-75.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	39.47	40.55	25.9	43.18	21.46	20.09	68.65	38.91	27.48
Merged-chr18-47330395-1	chr18	47329895	47330895	+	873.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	38473.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	8.01	8.29	0.0	14.17	18.66	9.65	9.51	4.42	3.75
Merged-chr6-134366851-3	chr6	134366349	134367349	+	873.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-29480.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	32.04	16.59	20.35	39.81	19.59	21.7	4.22	3.54	3.75
Merged-chr1-167342014-3	chr1	167341501	167342501	+	873.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7990.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	5.72	4.61	0.0	8.77	3.73	8.04	1.06	4.42	7.49
Merged-chr19-5809057-3	chr19	5808555	5809555	+	873.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6383.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	84.09	69.12	61.97	99.86	46.65	69.93	64.43	63.23	56.21
Merged-chr5-5358110-2	chr5	5357584	5358584	+	873.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	22167.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	16.59	17.05	24.05	20.24	18.66	31.35	28.52	25.65	16.86
Merged-chr6-83632928-3	chr6	83632454	83633454	+	873.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	23162.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	152.17	188.0	121.17	168.0	162.81	223.45	152.09	191.9	85.56
Merged-chr13-46043205-1	chr13	46042705	46043705	+	873.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-78214.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	11.44	11.98	13.87	21.59	25.19	12.86	6.34	8.4	14.36
Merged-chr2-143847050-3	chr2	143846523	143847523	+	873.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291061, intron 3 of 7)	intron (NM_001291061, intron 3 of 7)	16150.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.58	7.83	9.25	10.12	5.6	18.49	8.45	2.65	7.49
Merged-chr7-66175951-3	chr7	66175449	66176449	+	873.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66434.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	2.86	6.45	10.17	4.05	1.87	20.9	10.56	6.19	2.5
Merged-chr4-88464781-3	chr4	88464269	88465269	+	873.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25843.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	9.15	7.37	3.7	7.42	4.67	4.82	7.39	7.96	5.0
Merged-chr17-6476886-3	chr17	6476346	6477346	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25852.0	NR_033520	547127.0	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	277.45	222.1	191.47	452.06	435.72	298.21	78.16	70.3	38.1
Merged-chr7-16628306-3	chr7	16627812	16628812	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136929, intron 2 of 2)	intron (NR_136929, intron 2 of 2)	-13319.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.57	1.84	6.47	7.42	0.93	3.22	3.17	1.33	5.0
Merged-chr4-138207093-3	chr4	138206590	138207590	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172703)	TTS (NM_172703)	-9522.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	51.48	35.02	12.95	46.56	38.72	27.33	24.29	10.17	7.49
Merged-chr5-64463838-3	chr5	64463346	64464346	+	873.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040681, intron 1 of 2)	MLT1C|LTR|ERVL-MaLR	4096.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	8.01	12.44	9.25	2.02	6.53	3.22	10.56	9.29	9.37
Merged-chr5-64160977-2	chr5	64160474	64161474	+	873.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 1 of 19)	intron (NM_019636, intron 1 of 19)	714.0	NM_001310611	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	18.31	13.82	12.95	13.49	11.66	9.65	14.79	15.48	6.25
Merged-chr1-59608584-3	chr1	59608094	59609094	+	873.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	intron (NM_001013771, intron 13 of 19)	62240.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	19.45	14.75	18.5	12.82	12.13	12.06	27.46	26.53	24.98
Merged-chr1-156676370-3	chr1	156675873	156676873	+	873.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	29.75	29.49	23.12	19.57	11.66	28.13	15.84	21.22	13.74
Merged-chr4-139232622-3	chr4	139232122	139233122	+	873.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38511.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	144.73	110.13	84.17	184.2	128.76	89.22	151.03	139.72	49.34
Merged-chr19-55552931-2	chr19	55552434	55553434	+	873.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	149270.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	41.76	47.46	38.85	32.39	33.59	36.17	29.57	22.11	27.48
Merged-chr10-118370635-3	chr10	118370142	118371142	+	873.072205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70404.0	NM_008337	15978.0	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	4.58	5.53	3.7	6.07	1.87	0.0	5.28	3.98	0.0
Merged-chr6-148945315-8	chr6	148944922	148945922	+	873.05835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355645)	promoter-TSS (NM_001355645)	565.0	NR_144294	109163.0	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	22.88	14.28	7.4	21.59	15.86	15.27	20.07	14.15	8.74
Merged-chr1-152597077-3	chr1	152596593	152597593	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	28124.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	49.2	59.9	39.77	50.6	43.39	40.99	26.4	24.32	16.86
Merged-chr9-44233377-3	chr9	44232906	44233906	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	640.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	160.75	152.06	165.57	157.21	117.09	176.83	212.29	210.47	153.01
Merged-chr12-100053813-3	chr12	100053332	100054332	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	-58499.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	40.62	21.66	14.8	93.11	41.52	46.62	52.81	38.47	22.48
Merged-chr15-65872743-3	chr15	65872227	65873227	+	873.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356582, exon 23 of 23)	3' UTR (NM_001356582, exon 23 of 23)	39527.0	NM_001347038	18256.0	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	12.59	9.22	12.02	4.72	11.66	6.43	3.17	6.19	1.25
Merged-chr2-11544554-3	chr2	11544065	11545065	+	873.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	9364.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	14.3	9.22	9.25	15.52	14.46	17.68	14.79	7.52	4.37
Merged-chr17-29848962-3	chr17	29848488	29849488	+	873.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 6 of 15)	intron (NM_001081160, intron 6 of 15)	38894.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.57	5.07	5.55	4.05	3.73	1.61	1.06	2.65	6.25
Merged-chr11-74650433-1	chr11	74649933	74650933	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	938.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	61.78	46.08	51.8	49.93	44.78	35.37	58.09	47.75	24.36
Merged-chr3-144584931-3	chr3	144584439	144585439	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	14512.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	59.49	84.78	60.12	56.0	41.52	41.8	77.1	64.11	68.07
Merged-chr17-24162228-1	chr17	24161728	24162728	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172935, intron 3 of 10)	intron (NM_172935, intron 3 of 10)	1505.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	28.6	28.11	16.65	26.99	25.19	33.76	12.67	7.96	18.11
Merged-chr16-21915642-1	chr16	21915142	21916142	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172821, intron 9 of 12)	Lx8|LINE|L1	23673.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	21.17	10.6	3.7	25.64	14.46	13.66	6.34	18.57	6.87
Merged-chr2-166190178-1	chr2	166189678	166190678	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-34495.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	19.45	9.22	9.25	37.11	20.06	36.17	19.01	11.5	15.61
Merged-chr18-46457194-1	chr18	46456694	46457694	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8622.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	13.16	10.14	11.1	15.52	6.06	11.25	10.56	7.96	5.0
Merged-chr10-86655594-1	chr10	86655094	86656094	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-29933.0	NR_015572	66263.0	Mm.392261	NR_015572	ENSMUSG00000097412	1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	2.86	2.76	2.77	4.72	1.4	1.61	3.17	2.21	3.12
Merged-chr10-63243279-1	chr10	63242779	63243779	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026101)	promoter-TSS (NM_026101)	-518.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	77.23	88.93	70.3	56.0	71.38	94.04	143.64	146.36	63.08
Merged-chr7-44430477-1	chr7	44429977	44430977	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12010.0	NM_198250	272381.0	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	5.72	1.84	7.4	2.02	1.4	0.0	2.11	0.44	5.62
Merged-chr6-129631241-2	chr6	129630749	129631749	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-7385.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	6.86	5.53	16.65	5.4	1.87	8.04	2.11	8.4	3.12
Merged-chr5-43423202-2	chr5	43422705	43423705	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92364.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.57	5.53	0.0	6.75	2.33	4.02	3.17	1.33	2.5
Merged-chr9-55310365-3	chr9	55309850	55310850	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16563.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	24.03	32.72	38.85	85.01	85.84	75.56	33.8	28.74	29.35
Merged-chr2-18959250-1	chr2	18958750	18959750	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	38871.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	16.02	7.37	22.2	13.49	13.06	8.84	8.45	5.31	4.37
Merged-chr19-57623877-1	chr19	57623377	57624377	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 1 of 28)	intron (NM_181415, intron 1 of 28)	12843.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	1.14	5.07	1.85	8.77	8.4	15.27	5.28	1.33	5.62
Merged-chr17-36930458-1	chr17	36929958	36930958	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045439, intron 2 of 2)	intron (NR_045439, intron 2 of 2)	6666.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	0.57	0.46	1.85	4.72	3.73	1.61	4.22	0.44	6.25
Merged-chr6-136827384-3	chr6	136826799	136827799	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021714, intron 1 of 11)	intron (NM_021714, intron 1 of 11)	917.0	NM_021714	60321.0	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	264.86	256.66	135.97	259.77	235.59	127.8	184.83	223.29	106.79
Merged-chr10-99633379-2	chr10	99632885	99633885	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	B4|SINE|B4	8535.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	14.3	12.44	18.5	14.84	18.19	8.84	20.07	17.69	29.35
Merged-chr11-100570626-3	chr11	100570116	100571116	+	873.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 11 of 11)	intron (NM_028918, intron 11 of 11)	-4323.0	NM_009923	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	34.32	29.95	23.12	26.31	26.12	22.51	35.91	46.43	31.23
Merged-chr17-32617437-1	chr17	32616937	32617937	+	873.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MuLV-int|LTR|ERV1	-3882.0	NM_001100187	677156.0	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	6.29	4.15	1.85	5.4	5.6	4.82	10.56	9.29	1.25
Merged-chr19-21785942-3	chr19	21785445	21786445	+	872.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	7605.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	60.07	58.98	37.0	29.69	25.66	28.13	19.01	45.54	18.11
Merged-chr4-138426889-3	chr4	138426393	138427393	+	872.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7779.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	12.01	4.61	3.7	8.1	3.27	0.0	16.9	5.31	6.87
Merged-chr7-6127267-3	chr7	6126757	6127757	+	872.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28714.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	6.86	4.61	0.0	7.42	4.67	2.41	8.45	1.33	7.49
Merged-chr10-81417004-3	chr10	81416459	81417459	+	872.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106141)	promoter-TSS (NR_106141)	-662.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	26.89	27.65	31.45	23.62	13.06	21.7	20.07	17.24	11.87
Merged-chr11-26140219-3	chr11	26139725	26140725	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	L1MA6|LINE|L1	-62015.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	9.72	5.07	6.47	8.77	7.0	11.25	14.79	8.4	9.99
Merged-chr7-80454965-3	chr7	80454447	80455447	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007550)	TTS (NM_007550)	-49511.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	8.58	6.45	6.47	8.1	17.73	21.7	15.84	7.52	13.74
Merged-chr6-145211642-3	chr6	145211119	145212119	+	872.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177222)	promoter-TSS (NM_177222)	472.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	200.79	246.98	199.79	224.68	243.05	163.17	282.0	387.78	186.11
Merged-chr10-41615625-3	chr10	41615132	41616132	+	872.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 24 of 47)	intron (NM_001358562, intron 24 of 47)	47616.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	2.29	1.84	5.55	5.4	6.53	4.82	2.11	2.21	4.37
Merged-chr7-101379927-3	chr7	101379422	101380422	+	872.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1800.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	62.93	67.27	88.8	58.7	43.39	72.34	65.48	69.86	56.21
Merged-chr11-68430681-3	chr11	68430198	68431198	+	872.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1427.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	88.1	99.53	57.35	87.71	111.96	77.97	66.54	82.69	58.71
Merged-chr11-48858151-3	chr11	48857672	48858672	+	872.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13248.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	20.02	16.13	24.05	40.48	20.53	16.88	21.12	20.78	10.62
Merged-chr15-76670208-2	chr15	76669712	76670712	+	872.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007989)	promoter-TSS (NM_007989)	-264.0	NM_007989	14106.0	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	5.15	0.46	16.65	4.72	2.33	3.22	5.28	7.07	8.74
Merged-chr6-134070087-3	chr6	134069607	134070607	+	872.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	34407.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	70.93	104.14	61.05	74.22	67.64	65.91	63.37	77.38	56.21
Merged-chr8-35208570-3	chr8	35208075	35209075	+	872.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167166.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.29	2.3	1.85	4.72	7.93	0.8	15.84	7.96	5.0
Merged-chr5-97009235-2	chr5	97008751	97009751	+	872.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	11562.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	13.73	12.44	21.27	44.53	30.32	45.01	57.03	42.45	34.35
Merged-chr9-120564685-5	chr9	120564150	120565150	+	872.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178676, intron 10 of 10)	B4|SINE|B4	-6867.0	NM_025974	67115.0	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	28.6	12.9	18.5	18.22	25.19	24.11	21.12	17.69	11.24
Merged-chr2-80026231-3	chr2	80025703	80026703	+	872.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	12699.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	97.25	73.26	36.07	85.69	81.64	76.36	103.51	105.24	81.19
Merged-chr13-54302951-4	chr13	54302391	54303391	+	872.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-68458.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	50.34	82.48	71.22	43.86	51.78	52.25	159.48	88.88	78.69
Merged-chr11-103308094-3	chr11	103307596	103308596	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	36606.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	131.57	84.78	91.57	67.47	40.59	78.77	130.97	102.14	57.46
Merged-chr1-61690901-1	chr1	61690401	61691401	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	MIR|SINE|MIR	52077.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	4.0	1.84	0.0	5.4	1.4	3.22	1.06	4.86	3.75
Merged-chrX-12124769-3	chrX	12124275	12125275	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	35571.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	2.86	7.37	3.7	8.77	3.27	2.41	3.17	0.88	1.25
Merged-chr6-146221580-1	chr6	146221080	146222080	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	280643.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	32.04	18.43	11.1	63.42	47.12	30.54	44.36	21.67	11.24
Merged-chr19-11966493-1	chr19	11965993	11966993	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	649.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	28.03	14.75	28.67	29.01	20.06	24.92	24.29	16.36	19.36
Merged-chr5-146780189-3	chr5	146779708	146780708	+	872.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	B4A|SINE|B4	14748.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	46.91	72.34	61.05	80.29	52.72	65.91	127.8	123.36	60.58
Merged-chr6-123260433-1	chr6	123259933	123260933	+	872.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1674.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	11.44	12.9	1.85	47.23	29.86	13.66	14.79	14.59	8.12
Merged-chr13-33076324-1	chr13	33075824	33076824	+	872.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-7779.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	16.02	13.36	19.42	11.47	8.86	4.82	54.92	48.2	31.85
Merged-chr4-132974109-3	chr4	132973604	132974604	+	872.6166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010208)	promoter-TSS (NM_010208)	9.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	81.23	91.24	83.25	66.8	55.51	58.68	67.6	72.07	54.96
Merged-chr3-22152936-3	chr3	22152448	22153448	+	872.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 2 of 15)	intron (NM_030732, intron 2 of 15)	76296.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.72	3.69	5.55	4.05	6.06	8.84	4.22	9.29	3.12
Merged-chr12-32944188-3	chr12	32943701	32944701	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	9588.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.29	5.07	3.7	4.05	5.6	6.43	2.11	3.1	6.87
Merged-chr2-166688227-3	chr2	166687746	166688746	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	MTC|LTR|ERVL-MaLR	25586.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	25.17	31.79	24.97	32.39	15.86	16.08	63.37	49.96	26.85
Merged-chr7-19797412-3	chr7	19796916	19797916	+	872.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023224)	promoter-TSS (NM_023224)	-607.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	4.0	3.23	1.85	6.07	2.8	4.82	4.22	2.21	5.0
Merged-chr12-12229747-2	chr12	12229248	12230248	+	872.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-32391.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	149.88	140.54	79.55	103.23	85.37	81.18	81.33	105.68	73.69
Merged-chr19-5882170-3	chr19	5881680	5882680	+	872.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134154, intron 4 of 5)	intron (NM_134154, intron 4 of 5)	4358.0	NM_001361974	107375.0	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	17.73	21.66	26.82	20.92	23.33	28.94	17.96	28.74	31.23
Merged-chr11-70777363-3	chr11	70776862	70777862	+	872.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12915.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	17.16	6.45	1.85	9.45	5.13	9.65	10.56	9.29	4.37
Merged-chr7-118995230-3	chr7	118994737	118995737	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195774)	promoter-TSS (NM_001195774)	-26.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	4.58	0.46	1.85	2.02	0.93	3.22	2.11	0.88	5.0
Merged-chr3-81058692-3	chr3	81058191	81059191	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	22275.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	54.35	31.33	22.2	68.15	39.65	61.09	39.08	26.97	24.98
Merged-chr3-152895122-3	chr3	152894631	152895631	+	872.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	87076.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	8.01	12.44	2.77	8.1	11.2	9.65	6.34	8.4	5.0
Merged-chr13-94295103-1	chr13	94294603	94295603	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9272.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	9.15	11.98	3.7	10.12	6.06	11.25	2.11	6.19	3.75
Merged-chr7-33900227-3	chr7	33899716	33900716	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44769.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	23.45	21.66	27.75	26.31	16.33	16.08	21.12	13.27	13.74
Merged-chr13-119600286-2	chr13	119599748	119600748	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23571.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.58	3.23	0.92	15.52	2.8	4.82	11.62	2.65	7.49
Merged-chr4-117787196-1	chr4	117786696	117787696	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21530.0	NM_029416	75753.0	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	1.72	0.46	4.62	6.75	7.0	5.63	6.34	5.31	5.62
Merged-chr1-88433705-2	chr1	88433218	88434218	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26708.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.0	2.76	1.85	11.47	9.33	12.06	8.45	5.75	9.37
Merged-chr5-115493017-2	chr5	115492465	115493465	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8481.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	9.15	3.23	4.62	6.07	6.06	1.61	4.22	0.88	3.12
Merged-chr7-80269197-2	chr7	80268735	80269735	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178070)	promoter-TSS (NM_178070)	-420.0	NM_178070	233405.0	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	81.23	57.6	74.92	68.82	37.32	98.06	80.27	87.55	45.59
Merged-chr8-105637253-1	chr8	105636753	105637753	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	97.0	NR_151743	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	227.11	222.56	206.26	209.16	171.68	190.5	234.47	195.88	191.73
Merged-chr4-46557136-1	chr4	46556636	46557636	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 2 of 11)	intron (NM_001164804, intron 2 of 11)	9304.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	63.5	80.18	61.05	70.85	77.91	55.46	36.97	23.43	18.74
Merged-chr10-19506168-2	chr10	19505670	19506670	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152784, exon 3 of 4)	non-coding (NR_152784, exon 3 of 4)	11527.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	21.17	23.5	30.52	29.01	17.73	33.76	29.57	15.48	19.98
Merged-chr8-107505258-1	chr8	107504758	107505758	+	872.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 6 of 23)	intron (NM_025830, intron 6 of 23)	-45986.0	NR_029553	387158.0		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	18.88	12.9	12.02	19.57	11.2	4.82	35.91	24.32	11.87
Merged-chr1-106030566-3	chr1	106030113	106031113	+	872.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001122676, exon 13 of 14)	exon (NM_001122676, exon 13 of 14)	40207.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	9.15	5.53	12.95	8.77	2.33	16.08	8.45	3.54	8.74
Merged-chr8-70898217-3	chr8	70897717	70898717	+	872.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-774.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	70.93	114.27	104.52	45.88	94.7	97.26	77.1	137.96	73.07
Merged-chr10-127164796-3	chr10	127164293	127165293	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008080)	promoter-TSS (NM_008080)	-363.0	NR_045166	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	9.15	5.53	2.77	10.12	7.46	4.82	6.34	3.54	3.75
Merged-chr3-27453775-3	chr3	27453311	27454311	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 22 of 26)	intron (NM_001356953, intron 22 of 26)	82460.0	NM_177330	208188.0	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	16.59	24.42	14.8	18.22	28.92	26.53	10.56	10.17	7.49
Merged-chr17-35824633-3	chr17	35824126	35825126	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008027, exon 5 of 13)	exon (NM_008027, exon 5 of 13)	1269.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	8.01	6.91	8.32	14.84	3.27	20.09	9.51	11.5	9.99
Merged-chrX-61680146-3	chrX	61679659	61680659	+	872.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29457.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	53.77	36.4	19.42	67.47	56.91	53.85	109.84	109.22	36.85
Merged-chr8-123043506-3	chr8	123043005	123044005	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045268, exon 1 of 1)	non-coding (NR_045268, exon 1 of 1)	930.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	311.77	377.84	138.74	273.26	278.04	131.02	191.17	286.97	147.39
Merged-chr12-112674569-4	chr12	112674112	112675112	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001165894)	promoter-TSS (NM_001165894)	272.0	NM_001331107	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	33.18	41.93	86.02	63.42	43.39	64.3	100.34	74.73	52.46
Merged-chr14-13995649-4	chr14	13995223	13996223	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16768.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	23.45	21.66	55.5	18.89	18.19	16.88	31.69	27.86	16.86
Merged-chr16-5202808-3	chr16	5202318	5203318	+	872.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027804, intron 1 of 8)	intron (NR_027804, intron 1 of 8)	1194.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	30.89	29.03	26.82	50.6	29.39	45.82	32.74	26.97	42.47
Merged-chr13-23879819-3	chr13	23879335	23880335	+	872.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121611, intron 8 of 12)	intron (NR_121611, intron 8 of 12)	9562.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	10.3	11.06	0.0	12.14	3.73	3.22	8.45	7.07	15.61
Merged-chr2-113654246-1	chr2	113653746	113654746	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-30844.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	5.15	7.37	17.57	3.37	10.73	9.65	8.45	7.52	2.5
Merged-chr14-98873695-1	chr14	98873195	98874195	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172441.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	4.58	4.61	1.85	10.12	7.93	5.63	4.22	0.44	3.75
Merged-chr8-84701771-2	chr8	84701258	84702258	+	872.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008535, exon 1 of 4)	5' UTR (NM_008535, exon 1 of 4)	301.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	86.95	72.34	100.82	82.32	62.51	90.83	53.87	43.33	34.35
Merged-chr13-9418801-3	chr13	9418305	9419305	+	872.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	142280.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	22.31	32.25	28.67	25.64	17.26	32.15	21.12	20.34	15.61
Merged-chr17-37286904-3	chr17	37286407	37287407	+	872.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6489.0	NM_146515	258508.0	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	3.43	4.15	0.0	10.12	3.27	4.02	4.22	2.21	1.25
Merged-chrX-159071886-3	chrX	159071364	159072364	+	872.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-183918.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	5.72	7.83	5.55	7.42	6.53	0.0	9.51	4.42	4.37
Merged-chr11-33148524-3	chr11	33148010	33149010	+	872.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	5.72	3.69	5.55	4.72	7.93	4.02	2.11	3.98	1.25
Merged-chr18-68220095-2	chr18	68219595	68220595	+	872.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	RLTR42-int|LTR|ERVK	-7851.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	52.06	51.61	32.37	61.4	55.05	38.58	43.3	39.35	35.6
Merged-chr1-186204372-2	chr1	186203887	186204887	+	872.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87077.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	22.31	17.97	10.17	10.8	4.67	6.43	1.06	2.65	0.0
Merged-chr6-30035264-3	chr6	30034781	30035781	+	872.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-12707.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	1.72	8.29	9.25	4.05	5.6	11.25	7.39	3.98	8.74
Merged-chr12-10755213-1	chr12	10754713	10755713	+	872.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-292600.0	NR_045860	71457.0	Mm.95280	NR_045860	ENSMUSG00000113620	7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	4.0	1.84	1.85	2.02	1.87	8.04	3.17	5.31	5.0
Merged-chr8-125053649-3	chr8	125053153	125054153	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174853)	promoter-TSS (NM_174853)	-542.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	62.93	34.1	46.25	72.87	58.78	60.28	85.55	90.64	44.34
Merged-chr11-6169431-3	chr11	6168919	6169919	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	3912.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	8.01	4.61	5.55	6.07	11.2	11.25	8.45	7.96	5.0
Merged-chr7-88117231-1	chr7	88116731	88117731	+	872.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001143834, intron 10 of 10)	intron (NM_001143834, intron 10 of 10)	-160854.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	16.59	9.68	7.4	14.84	14.93	10.45	7.39	4.42	14.36
Merged-chr11-29787593-3	chr11	29787084	29788084	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 24 of 41)	intron (NM_146016, intron 24 of 41)	38084.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	69.79	108.28	72.15	82.99	84.9	84.4	110.9	110.1	74.32
Merged-chr10-4126573-3	chr10	4126074	4127074	+	872.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170785, intron 26 of 27)	intron (NM_001170785, intron 26 of 27)	86546.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	8.58	10.14	5.55	12.82	13.06	5.63	3.17	3.54	6.87
Merged-chr10-42118711-3	chr10	42118209	42119209	+	872.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100327.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	6.86	8.29	5.55	8.1	6.06	3.22	8.45	6.63	1.25
Merged-chr14-44105509-3	chr14	44105008	44106008	+	872.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	2621.0	NM_017388	53876.0	Mm.327386	NM_017388		Ear3	Rnase3|mR3	eosinophil-associated, ribonuclease A family, member 3	protein-coding	78.37	83.86	72.15	57.35	71.38	62.7	49.64	53.94	46.22
Merged-chr10-40476717-3	chr10	40476222	40477222	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198164, intron 9 of 11)	intron (NM_198164, intron 9 of 11)	-93640.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	16.59	22.12	31.45	29.69	27.99	25.72	27.46	22.11	15.61
Merged-chr6-94159452-3	chr6	94158927	94159927	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78015.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	20.59	32.72	6.47	77.59	87.7	49.03	11.62	22.99	7.49
Merged-chr2-130697566-3	chr2	130696956	130697956	+	872.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081162)	promoter-TSS (NM_001081162)	63.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	8.58	3.69	3.7	4.05	2.33	3.22	1.06	0.0	0.0
Merged-chr17-65766105-3	chr17	65765612	65766612	+	872.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	MTD|LTR|ERVL-MaLR	6640.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	28.6	23.96	27.75	27.66	14.46	19.29	80.27	71.19	44.34
Merged-chr14-118423553-1	chr14	118423053	118424053	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	57675.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	5.72	2.3	0.0	2.7	5.13	3.22	1.06	0.88	3.12
Merged-chr6-5292983-1	chr6	5292483	5293483	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	5390.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	13.16	13.82	18.5	18.22	9.33	12.06	9.51	5.31	11.87
Merged-chr19-5447758-2	chr19	5447358	5448358	+	872.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010235, exon 1 of 4)	5' UTR (NM_010235, exon 1 of 4)	160.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	10.87	5.99	3.7	13.49	9.33	1.61	6.34	3.98	3.75
Merged-chr15-6278747-3	chr15	6278252	6279252	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21037.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	13.73	22.58	7.4	18.89	16.33	8.04	13.73	11.05	7.49
Merged-chr6-115469464-3	chr6	115468966	115469966	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	47400.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	48.05	46.08	37.92	49.25	35.45	45.01	43.3	39.8	34.35
Merged-chr12-79029165-3	chr12	79028679	79029679	+	872.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	16.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	20.02	16.13	12.95	35.76	18.66	24.92	17.96	12.38	3.75
Merged-chrX-36874896-3	chrX	36874386	36875386	+	872.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019668, intron 2 of 5)	CpG-15640	591.0	NM_019668	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	82.95	115.2	74.92	91.76	90.5	98.06	98.23	82.69	69.32
Merged-chr12-52049573-3	chr12	52049058	52050058	+	872.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21495.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	8.58	5.99	7.4	14.84	5.6	4.82	8.45	4.42	11.24
Merged-chr18-13301284-1	chr18	13300784	13301784	+	872.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	294294.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.43	1.84	4.62	1.35	3.27	3.22	12.67	11.05	2.5
Merged-chr13-92804529-3	chr13	92804018	92805018	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9700.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	2.86	2.76	11.1	6.07	2.33	1.61	8.45	2.65	1.87
Merged-chr15-98871796-3	chr15	98871302	98872302	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-597.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	180.77	284.76	278.41	176.1	192.2	256.41	214.41	183.5	192.35
Merged-chr2-75991040-3	chr2	75990518	75991518	+	872.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081033)	TTS (NM_001081033)	-9051.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.57	3.69	7.4	2.02	2.8	8.04	3.17	2.65	8.74
Merged-chr1-152430054-2	chr1	152429554	152430554	+	872.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	L1M3|LINE|L1	30187.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	11.44	5.07	5.55	16.87	6.53	9.65	11.62	7.52	6.87
Merged-chr12-30578246-2	chr12	30577738	30578738	+	872.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	1.72	1.38	3.7	2.02	0.93	1.61	5.28	1.77	1.25
Merged-chr5-96919165-3	chr5	96918690	96919690	+	872.14447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2082.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	78.37	66.35	50.87	84.34	40.59	65.91	106.67	79.59	81.19
Merged-chr14-75829058-3	chr14	75828547	75829547	+	872.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15917.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	9.15	8.75	9.25	16.87	7.93	11.25	13.73	9.73	9.37
Merged-chr9-20966976-3	chr9	20966455	20967455	+	872.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010333, exon 2 of 2)	3' UTR (NM_010333, exon 2 of 2)	-7067.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	22.31	18.89	35.15	27.66	26.59	32.15	26.4	24.76	11.24
Merged-chr11-115535656-3	chr11	115535142	115536142	+	872.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133354, intron 1 of 3)	CpG	588.0	NM_133354	170930.0	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	201.36	149.75	154.47	163.28	96.1	110.12	213.35	130.44	131.15
Merged-chr6-53460149-3	chr6	53459660	53460660	+	872.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-113214.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	10.87	7.83	18.5	12.82	15.86	13.66	13.73	9.73	18.74
Merged-chr9-123985086-2	chr9	123984580	123985580	+	872.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6672.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	42.33	49.3	32.37	31.04	43.85	42.6	42.25	51.29	36.85
Merged-chr3-115818894-3	chr3	115818395	115819395	+	872.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69164.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	11.44	10.6	0.0	35.76	23.33	29.74	21.12	13.27	5.0
Merged-chr7-123207659-2	chr7	123207147	123208147	+	872.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7219.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.29	4.15	0.0	14.17	12.6	9.65	17.96	12.82	5.0
Merged-chr2-141030872-3	chr2	141030363	141031363	+	872.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-359387.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	8.58	5.99	7.4	4.05	5.6	3.22	3.17	10.17	0.0
Merged-chr7-110266029-3	chr7	110265526	110266526	+	872.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 5 of 11)	intron (NM_009302, intron 5 of 11)	44323.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	9.72	17.51	3.7	17.54	10.73	16.08	15.84	7.96	8.74
Merged-chr12-111676894-2	chr12	111676408	111677408	+	872.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1197.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	83.52	104.6	73.07	90.41	48.05	90.83	105.62	122.92	98.68
Merged-chr8-13156073-1	chr8	13155573	13156573	+	872.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3088.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	169.9	187.54	170.19	137.64	128.29	122.18	177.44	243.19	89.93
Merged-chr6-134087843-2	chr6	134087333	134088333	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	52133.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	9.72	12.44	5.55	8.77	7.46	9.65	5.28	6.63	5.0
Merged-chr17-25136599-1	chr17	25136099	25137099	+	872.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317404)	promoter-TSS (NM_001317404)	-32.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	18.88	12.44	12.95	16.19	9.33	10.45	69.71	70.75	24.36
Merged-chr18-54639858-1	chr18	54639358	54640358	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045400)	TTS (NR_045400)	28114.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	5.15	4.15	1.85	5.4	7.46	3.22	1.06	3.98	6.25
Merged-chr11-5734550-3	chr11	5734053	5735053	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6623.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	32.61	24.88	29.6	20.24	20.53	20.09	74.99	65.88	26.23
Merged-chr6-31373255-3	chr6	31372758	31373758	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040300, intron 2 of 2)	intron (NR_040300, intron 2 of 2)	25515.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	10.3	5.07	9.25	12.14	4.2	8.04	7.39	11.5	5.0
Merged-chr12-55303280-3	chr12	55302777	55303777	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021529)	promoter-TSS (NM_021529)	-277.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	172.76	223.94	131.34	166.66	208.06	170.4	186.94	192.78	114.91
Merged-chr3-9619723-1	chr3	9619223	9620223	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9638.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.14	3.69	1.85	8.1	3.73	4.02	2.11	4.42	9.99
Merged-chr10-41972967-1	chr10	41972467	41973467	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 7 of 17)	intron (NM_001034858, intron 7 of 17)	45415.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	20.02	12.44	18.5	26.99	26.12	25.72	21.12	29.63	26.85
Merged-chr1-131549201-1	chr1	131548701	131549701	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21298.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	30.32	20.74	28.67	21.59	24.26	22.51	45.42	44.22	24.36
Merged-chr16-44794592-1	chr16	44794092	44795092	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021325, exon 7 of 7)	3' UTR (NM_021325, exon 7 of 7)	-26136.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	14.3	11.98	11.1	13.49	12.6	13.66	7.39	8.84	13.12
Merged-chr9-96612108-1	chr9	96611608	96612608	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053268, intron 1 of 23)	L2|LINE|L2	19395.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	5.15	7.37	5.55	4.05	7.0	1.61	3.17	5.75	16.24
Merged-chr4-119105893-3	chr4	119105398	119106398	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2847.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	5.15	2.76	1.85	8.1	5.6	3.22	2.11	0.44	1.25
Merged-chr6-34716690-1	chr6	34716190	34717190	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145575, intron 1 of 11)	intron (NM_145575, intron 1 of 11)	7246.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.15	1.38	2.77	1.35	3.27	2.41	1.06	0.44	4.37
Merged-chr14-40928785-1	chr14	40928285	40929285	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	19424.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	45.76	31.33	26.82	43.18	35.45	55.46	35.91	22.11	29.98
Merged-chr1-177986897-2	chr1	177986403	177987403	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4495.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	4.58	2.76	3.7	8.77	5.13	6.43	15.84	4.86	3.75
Merged-chr2-35289167-1	chr2	35288667	35289667	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	6787.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	8.58	3.23	0.0	2.7	4.67	3.22	1.06	3.54	8.12
Merged-chr2-125667289-1	chr2	125666789	125667789	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 5 of 11)	intron (NM_199022, intron 5 of 11)	-5811.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	5.15	5.07	1.85	5.4	7.46	12.86	3.17	2.65	2.5
Merged-chr14-20307829-1	chr14	20307329	20308329	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153364, intron 7 of 9)	intron (NR_153364, intron 7 of 9)	13139.0	NR_153364	67725.0	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	12.01	2.76	0.0	18.22	12.13	11.25	20.07	10.61	8.12
Merged-chrX-140508071-1	chrX	140507571	140508571	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	34597.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	25.17	30.87	18.5	33.06	17.73	22.51	16.9	16.36	28.73
Merged-chr10-67127176-3	chr10	67126671	67127671	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-87.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	73.22	41.47	33.3	76.92	41.99	36.97	83.44	38.03	24.36
Merged-chr15-97351338-1	chr15	97350838	97351838	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	intron (NM_172293, intron 3 of 5)	-104051.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	17.73	21.2	5.55	18.89	14.0	21.7	19.01	17.24	13.12
Merged-chr7-128412255-2	chr7	128411726	128412726	+	872.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026418, intron 1 of 4)	intron (NM_026418, intron 1 of 4)	5946.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	56.63	61.75	90.65	38.46	36.39	69.93	49.64	49.52	44.34
Merged-chr14-87452249-1	chr14	87451749	87452749	+	872.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	35666.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.15	2.76	0.92	6.75	1.4	3.22	2.11	2.21	3.12
Merged-chr10-125314288-3	chr10	125313795	125314795	+	871.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-5479.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	33.18	33.18	40.7	43.18	35.45	22.51	28.52	32.72	34.97
Merged-chr1-151616725-2	chr1	151616243	151617243	+	871.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	RMER19B|LTR|ERVK	45370.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	29.75	27.65	14.8	50.6	27.06	43.4	17.96	26.53	16.86
Merged-chr7-63916559-3	chr7	63916058	63917058	+	871.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256311)	promoter-TSS (NM_001256311)	-299.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	22.88	23.96	20.35	26.31	16.79	24.92	17.96	9.73	24.36
Merged-chr11-116617856-3	chr11	116617331	116618331	+	871.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	6421.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	104.11	81.56	107.29	79.62	82.11	70.73	107.73	85.34	74.94
Merged-chr7-36697975-2	chr7	36697474	36698474	+	871.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-144.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	7.44	0.46	5.55	10.12	3.27	7.23	32.74	14.59	16.24
Merged-chr6-76513202-3	chr6	76512701	76513701	+	871.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-729276.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	4.0	10.6	5.55	8.77	14.93	16.08	4.22	3.98	9.99
Merged-chr15-73421510-3	chr15	73421023	73422023	+	871.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 1 of 34)	intron (NM_001358046, intron 1 of 34)	1668.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	30.32	21.66	11.1	14.84	14.0	16.08	28.52	11.05	14.99
Merged-chr11-117780172-1	chr11	117779672	117780672	+	871.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_154387)	promoter-TSS (NR_154387)	520.0	NM_145439	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	288.32	311.03	288.59	353.55	314.89	307.85	335.87	367.0	204.22
Merged-chr7-31155749-5	chr7	31155232	31156232	+	871.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4561.0	NR_153431	52857.0	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	75.51	100.91	104.52	68.15	99.37	135.04	127.8	112.75	69.32
Merged-chr9-57888223-3	chr9	57887719	57888719	+	871.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-22767.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	8.01	1.84	7.4	7.42	1.4	11.25	13.73	1.33	8.74
Merged-chr6-145765166-3	chr6	145764647	145765647	+	871.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43236.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	20.59	11.98	11.1	22.94	10.73	13.66	5.28	11.05	11.24
Merged-chr6-16896615-3	chr6	16896095	16897095	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	Lx3C|LINE|L1	1846.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	58.92	93.54	50.87	49.25	66.71	45.01	62.31	54.83	48.71
Merged-chr10-94312181-2	chr10	94311635	94312635	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001359762, exon 1 of 5)	5' UTR (NM_001359762, exon 1 of 5)	186.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.01	6.91	3.7	14.17	10.73	8.04	13.73	5.31	8.74
Merged-chr11-5502567-3	chr11	5502058	5503058	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-18083.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	28.6	18.89	18.5	18.22	15.39	20.9	25.35	15.48	23.11
Merged-chrX-74249882-3	chrX	74249386	74250386	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GC_rich|Low_complexity|Low_complexity	-3352.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	75.51	69.58	69.37	64.1	42.92	64.3	89.78	78.71	70.57
Merged-chr3-126611056-2	chr3	126610560	126611560	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	14109.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	60.64	94.46	47.17	89.06	55.51	40.19	55.98	41.12	31.23
Merged-chr9-31446123-2	chr9	31445617	31446617	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144936, intron 1 of 5)	intron (NM_144936, intron 1 of 5)	18121.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	5.15	3.69	7.4	15.52	16.33	15.27	4.22	3.1	1.25
Merged-chr1-71811456-3	chr1	71810972	71811972	+	871.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76640.0	NR_027659	667931.0	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	14.3	16.59	29.6	4.05	2.33	8.04	4.22	3.54	7.49
Merged-chr15-103515234-3	chr15	103514746	103515746	+	871.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001285890, exon 1 of 15)	5' UTR (NM_001285890, exon 1 of 15)	269.0	NM_001285890	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	22.88	13.82	5.55	10.8	10.73	8.04	19.01	16.8	14.99
Merged-chr9-96636648-3	chr9	96636113	96637113	+	871.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5110.0	NM_053268	114713.0	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	11.44	18.89	2.77	25.64	12.6	12.86	20.07	15.03	15.61
Merged-chr14-33057749-3	chr14	33057264	33058264	+	871.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 36 of 58)	intron (NM_001146022, intron 36 of 58)	66382.0	NM_026253	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	5.15	6.91	3.7	12.82	2.33	8.04	3.17	6.63	5.0
Merged-chr4-134734550-4	chr4	134734115	134735115	+	871.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30325.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	37.18	37.32	44.4	62.07	35.45	62.7	52.81	47.75	46.84
Merged-chr5-23712613-4	chr5	23712094	23713094	+	871.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038090)	promoter-TSS (NR_038090)	73.0	NR_038090	433855.0	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	6.86	5.07	23.12	80.97	92.37	50.64	7.39	2.21	7.49
Merged-chr12-4195438-3	chr12	4194956	4195956	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 6 of 21)	intron (NM_001159537, intron 6 of 21)	38509.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	31.46	29.03	24.97	33.06	26.12	59.48	16.9	16.36	21.23
Merged-chr6-125353028-3	chr6	125352536	125353536	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	3313.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	39.47	26.73	46.25	49.25	31.26	55.46	80.27	74.28	50.59
Merged-chr12-69332286-3	chr12	69331759	69332759	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 16 of 32)	PB1D9|SINE|Alu	24917.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	22.88	34.1	40.7	35.76	33.12	51.44	51.75	55.27	46.22
Merged-chr7-48750588-3	chr7	48750073	48751073	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38430.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	3.43	4.61	5.55	10.8	6.53	8.04	14.79	12.82	8.12
Merged-chr5-140722376-1	chr5	140721876	140722876	+	871.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1751.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	10.87	4.15	5.55	12.82	7.46	13.66	3.17	6.19	6.25
Merged-chr3-126624362-3	chr3	126623874	126624874	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	27423.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	119.56	98.61	80.47	76.92	76.04	78.77	98.23	116.73	69.95
Merged-chr2-102741855-3	chr2	102741360	102742360	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 4 of 10)	intron (NM_001077514, intron 4 of 10)	4900.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	14.87	12.9	12.95	16.19	5.6	8.04	3.17	7.07	8.74
Merged-chrX-163867918-3	chrX	163867426	163868426	+	871.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41091.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	10.3	8.29	18.5	14.17	10.26	22.51	15.84	13.71	9.99
Merged-chr9-7577548-2	chr9	7577042	7578042	+	871.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310717, intron 5 of 9)	intron (NM_001310717, intron 5 of 9)	6146.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	12.01	9.22	9.25	8.1	7.46	10.45	20.07	11.5	7.49
Merged-chr13-119358901-2	chr13	119358403	119359403	+	871.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308506, intron 12 of 16)	MTD|LTR|ERVL-MaLR	50108.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.15	3.69	1.85	1.35	3.73	4.82	8.45	7.52	3.75
Merged-chr15-100613803-3	chr15	100613294	100614294	+	871.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045701)	TTS (NR_045701)	1316.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	60.07	44.7	24.97	69.5	72.78	54.66	67.6	54.39	32.48
Merged-chr5-108447186-3	chr5	108446696	108447696	+	871.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1904.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	4.58	6.45	9.25	10.12	3.27	9.65	2.11	2.65	2.5
Merged-chr10-18887118-3	chr10	18886619	18887619	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42048.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	2.29	3.23	1.85	5.4	9.33	4.82	6.34	4.86	2.5
Merged-chr2-18655025-3	chr2	18654539	18655539	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-17423.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	9.72	8.29	1.85	5.4	3.27	5.63	6.34	4.86	2.5
Merged-chr10-116505509-3	chr10	116505013	116506013	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359253, intron 2 of 11)	intron (NM_001359253, intron 2 of 11)	22436.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	15.45	14.75	12.95	16.87	15.86	16.08	24.29	19.46	4.37
Merged-chr8-46740453-6	chr8	46739991	46740991	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045750)	promoter-TSS (NR_045750)	746.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	311.77	286.15	243.26	265.16	174.01	212.2	322.14	243.19	214.84
Merged-chr16-5145753-3	chr16	5145267	5146267	+	871.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	8.58	3.23	5.55	3.37	1.4	0.8	2.11	0.88	1.25
Merged-chr10-128525310-3	chr10	128524820	128525820	+	871.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011843, intron 1 of 30)	CpG	539.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	113.27	68.2	62.9	96.48	91.9	95.65	83.44	75.17	48.71
Merged-chr1-170582548-2	chr1	170582037	170583037	+	871.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	MTE2b|LTR|ERVL-MaLR	7312.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	4.58	2.3	1.85	5.4	7.0	3.22	5.28	2.65	0.62
Merged-chr7-46788530-3	chr7	46788038	46789038	+	871.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005247, intron 4 of 22)	intron (NM_001005247, intron 4 of 22)	7343.0	NM_001005248	246694.0	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	HPS5, biogenesis of lysosomal organelles complex 2 subunit 2	protein-coding	26.89	29.03	31.45	27.66	20.99	33.76	33.8	27.86	15.61
Merged-chr15-99381304-3	chr15	99380798	99381798	+	871.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10816.0	NM_001310622	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	32.61	12.44	9.25	33.74	15.86	1.61	25.35	21.22	8.12
Merged-chr9-103092415-3	chr9	103091913	103092913	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19661.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	2.86	2.76	1.85	2.02	0.93	3.22	7.39	0.88	2.5
Merged-chr1-9773360-2	chr1	9772887	9773887	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24743.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.58	14.75	4.62	8.77	11.2	9.65	16.9	19.01	8.74
Merged-chr2-167948132-1	chr2	167947632	167948632	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	15805.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	49.2	60.36	59.2	57.35	78.37	57.87	49.64	47.31	24.98
Merged-chr1-193649574-1	chr1	193649074	193650074	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H-int|LTR|ERVL-MaLR	-142044.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	1.72	2.3	0.0	1.35	1.87	6.43	3.17	2.21	1.25
Merged-chr1-106678400-3	chr1	106677872	106678872	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	L1MB3|LINE|L1	35918.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	4.0	6.45	7.4	5.4	11.66	8.04	10.56	12.38	8.74
Merged-chr14-120478982-2	chr14	120478432	120479432	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029519, exon 1 of 2)	exon (NM_029519, exon 1 of 2)	471.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	62.35	51.15	45.32	109.98	78.84	61.89	88.72	51.73	48.71
Merged-chr3-123798037-1	chr3	123797537	123798537	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107185.0	NR_121616	83398.0	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	8.01	7.83	9.25	10.8	14.93	20.9	3.17	4.86	0.62
Merged-chr8-33661330-1	chr8	33660830	33661830	+	871.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	RLTR21|LTR|ERVK	8092.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	5.72	5.99	5.55	8.77	6.53	8.84	72.88	80.92	72.45
Merged-chr1-85989215-3	chr1	85988661	85989661	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28106.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	34.32	27.65	9.25	47.23	37.32	25.72	45.42	48.64	21.86
Merged-chr3-146630622-1	chr3	146630122	146631122	+	871.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009474, exon 8 of 8)	3' UTR (NM_009474, exon 8 of 8)	-11310.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	1.14	0.92	0.0	4.72	5.13	4.02	4.22	3.98	2.5
Merged-chr2-45105950-3	chr2	45105421	45106421	+	871.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	4356.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	60.64	91.24	66.6	74.22	59.25	83.59	84.49	83.57	64.33
Merged-chr13-44484112-3	chr13	44483591	44484591	+	871.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	44364.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	17.73	14.28	11.1	24.29	9.8	12.86	55.98	67.65	43.09
Merged-chr17-47784605-2	chr17	47784082	47785082	+	871.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-1162.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	10.3	7.83	14.8	8.1	15.86	16.08	9.51	6.19	6.25
Merged-chr8-84011450-3	chr8	84011013	84012013	+	871.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035431)	TTS (NR_035431)	120.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	5.15	3.69	10.17	4.72	1.87	3.22	5.28	2.65	2.5
Merged-chr6-71458183-3	chr6	71457688	71458688	+	871.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17551.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	8.01	6.91	22.2	50.6	27.06	32.96	47.53	55.71	18.74
Merged-chr15-95791733-3	chr15	95791281	95792281	+	871.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	938.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	237.97	302.27	144.29	260.44	261.71	154.33	349.6	379.82	153.63
Merged-chr6-120191110-1	chr6	120190610	120191610	+	871.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-2713.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	8.58	5.07	7.4	7.42	5.6	12.86	7.39	4.42	7.49
Merged-chr13-112810490-1	chr13	112809990	112810990	+	871.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	MIR|SINE|MIR	9713.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	5.72	1.84	5.55	6.75	7.46	12.06	17.96	32.28	5.0
Merged-chr7-25790801-3	chr7	25790310	25791310	+	871.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2077.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	13.16	9.68	12.95	12.14	9.8	11.25	8.45	10.17	9.99
Merged-chr18-36699734-3	chr18	36699246	36700246	+	871.377808	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3821.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	56.06	52.07	29.6	63.42	63.45	73.14	44.36	34.49	51.21
Merged-chr15-25524355-2	chr15	25523863	25524863	+	871.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98187.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	9.15	2.3	0.0	8.1	3.27	4.82	3.17	1.33	5.62
Merged-chr12-75413093-2	chr12	75412596	75413596	+	871.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	L2a|LINE|L2	3685.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	6.86	7.83	7.4	8.77	9.33	18.49	6.34	12.82	7.49
Merged-chr8-46876131-2	chr8	46875634	46876634	+	871.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110753.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	15.45	10.6	12.95	14.84	18.19	24.92	19.01	12.82	16.86
Merged-chr8-46770084-3	chr8	46769590	46770590	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	30345.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	80.09	70.96	70.3	96.48	48.98	51.44	64.43	62.79	51.84
Merged-chrX-48452396-3	chrX	48451877	48452877	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	10755.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	56.06	70.04	46.25	45.88	48.52	46.62	44.36	58.37	39.97
Merged-chr16-44993541-3	chr16	44993051	44994051	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49873.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	11.44	12.44	22.2	11.47	8.4	2.41	4.22	4.86	11.24
Merged-chr6-34216983-3	chr6	34216458	34217458	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39904.0	NM_021435	58246.0	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	10.3	15.21	5.55	29.01	29.86	13.66	19.01	10.17	8.12
Merged-chr13-9330843-1	chr13	9330343	9331343	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	54318.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	11.44	4.15	12.02	10.12	7.46	3.22	11.62	7.96	8.74
Merged-chr2-71042078-3	chr2	71041573	71042573	+	871.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	Lx8|LINE|L1	13533.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	63.5	49.3	13.87	190.95	104.96	51.44	130.97	137.51	36.85
Merged-chr16-44778034-1	chr16	44777534	44778534	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	12298.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	64.07	117.96	62.9	104.58	92.84	79.58	72.88	59.69	37.47
Merged-chr5-113703549-1	chr5	113703049	113704049	+	871.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033216, intron 2 of 2)	intron (NR_033216, intron 2 of 2)	21223.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	4.58	1.84	3.7	6.07	0.93	6.43	6.34	0.44	2.5
Merged-chr6-108341308-2	chr6	108340816	108341816	+	871.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	128220.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	24.03	22.58	16.65	18.22	12.13	17.68	3.17	0.0	2.5
Merged-chr19-55740651-3	chr19	55740160	55741160	+	871.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1150.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	72.08	67.27	81.4	69.5	43.85	83.59	81.33	76.05	60.58
Merged-chr7-67759871-3	chr7	67759361	67760361	+	871.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201639)	promoter-TSS (NM_201639)	-119.0	NM_207663	233335.0	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	2.86	0.0	0.0	2.02	0.47	0.0	1.06	0.0	3.75
Merged-chr5-147532115-3	chr5	147531606	147532606	+	871.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 13 of 18)	intron (NM_028291, intron 13 of 18)	101950.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	13.16	15.67	17.57	22.27	22.39	39.39	20.07	21.22	39.35
Merged-chrX-12088642-5	chrX	12088126	12089126	+	871.253357	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	-8073.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	92.1	112.89	62.9	82.99	68.58	102.08	70.76	75.61	89.93
Merged-chr1-45882479-1	chr1	45881979	45882979	+	871.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43115.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	156.17	170.03	110.07	145.74	131.09	165.58	155.26	148.13	82.44
Merged-chr16-35734225-2	chr16	35733728	35734728	+	871.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 3 of 8)	intron (NM_153550, intron 3 of 8)	35128.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	10.87	4.15	5.55	4.72	4.2	4.82	2.11	2.21	5.0
Merged-chr8-35709812-1	chr8	35709312	35710312	+	871.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116747.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.43	1.84	2.77	5.4	2.8	1.61	10.56	8.4	3.12
Merged-chr1-190826660-3	chr1	190826171	190827171	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 8 of 14)	L1MDa|LINE|L1	85099.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	20.02	18.89	21.27	16.19	11.66	15.27	39.08	25.65	21.23
Merged-chr12-85465109-3	chr12	85464624	85465624	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8766.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	9.15	6.91	11.1	11.47	5.13	4.82	9.51	4.86	8.74
Merged-chr5-130170771-3	chr5	130170279	130171279	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1040.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	97.25	125.79	56.42	84.34	128.76	99.67	107.73	97.28	49.34
Merged-chr12-102381812-3	chr12	102381283	102382283	+	871.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	MER63A|DNA|hAT-Blackjack	58030.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	104.69	88.47	87.87	126.85	62.98	123.78	138.36	118.06	49.96
Merged-chr13-111789696-4	chr13	111789153	111790153	+	871.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	19340.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	33.18	29.49	12.02	22.94	14.0	16.08	39.08	22.11	3.75
Merged-chr4-139230964-3	chr4	139230463	139231463	+	871.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	36852.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	116.7	75.57	83.25	118.08	80.24	60.28	127.8	82.69	58.08
Merged-chr11-113339983-1	chr11	113339483	113340483	+	871.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 6 of 9)	intron (NM_027216, intron 6 of 9)	-130314.0	NR_040276	319871.0	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	7.44	9.22	8.32	14.17	14.46	37.78	7.39	3.1	6.25
Merged-chr6-108426929-3	chr6	108426419	108427419	+	871.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-62824.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	24.03	21.2	12.95	14.17	14.93	8.04	7.39	5.31	8.74
Merged-chr17-73944943-3	chr17	73944446	73945446	+	871.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	5250.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	43.48	47.0	42.55	81.64	62.98	63.5	73.93	84.45	56.21
Merged-chr8-122145083-2	chr8	122144575	122145575	+	871.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137066.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.58	4.61	1.85	8.1	3.73	4.02	5.28	0.88	3.75
Merged-chr2-78869716-2	chr2	78869226	78870226	+	871.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151458)	promoter-TSS (NR_151458)	48.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	86.95	51.15	26.82	105.93	43.85	54.66	82.38	46.43	29.98
Merged-chr1-144247668-3	chr1	144247150	144248150	+	871.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1454.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	104.11	143.3	65.67	121.45	132.49	86.81	95.06	101.26	51.21
Merged-chr8-84186712-3	chr8	84186238	84187238	+	871.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7777.0	NR_029821	723819.0		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	32.04	16.13	11.1	47.9	38.25	49.83	39.08	26.09	23.73
Merged-chr13-112667341-3	chr13	112666845	112667845	+	871.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	6579.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	81.8	87.55	85.1	48.58	36.85	31.35	86.61	102.58	49.96
Merged-chr4-135018239-3	chr4	135017733	135018733	+	871.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87253.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	1.72	3.69	2.77	2.02	0.93	3.22	1.06	2.65	1.25
Merged-chr2-68381332-3	chr2	68380834	68381834	+	871.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90647.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	14.3	14.75	11.1	17.54	12.13	16.88	12.67	11.5	17.49
Merged-chr1-180429983-2	chr1	180429496	180430496	+	871.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	53508.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	5.15	3.23	3.7	9.45	1.4	2.41	8.45	4.42	0.0
Merged-chr4-36183932-2	chr4	36183441	36184441	+	871.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-338737.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.43	4.61	10.17	12.14	8.4	14.47	7.39	12.38	7.49
Merged-chr12-111016990-3	chr12	111016473	111017473	+	871.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22575.0	NR_036598	77878.0	Mm.293198	NR_036598	ENSMUSG00000113056	6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	4.58	6.45	7.4	2.7	11.2	4.02	10.56	4.42	3.12
Merged-chr1-191178899-3	chr1	191178393	191179393	+	871.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	4440.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	35.47	8.75	5.55	29.01	14.0	4.82	12.67	8.4	3.75
Merged-chr2-129297801-3	chr2	129297280	129298280	+	871.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181589)	promoter-TSS (NM_181589)	410.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	179.05	171.41	123.02	93.11	101.7	117.35	173.21	199.42	136.77
Merged-chr2-158413463-3	chr2	158412951	158413951	+	871.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291137, intron 1 of 30)	intron (NM_001291137, intron 1 of 30)	3598.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	32.04	36.86	25.9	31.71	14.0	8.04	50.7	37.14	16.24
Merged-chr2-59645446-2	chr2	59644957	59645957	+	871.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-1312.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	3.43	5.07	2.77	7.42	6.06	11.25	5.28	3.1	6.87
Merged-chr9-50761714-3	chr9	50761219	50762219	+	871.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311073, exon 4 of 4)	3' UTR (NM_001311073, exon 4 of 4)	4214.0	NM_001311073	68721.0	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	5.72	5.07	5.55	8.1	3.27	0.0	8.45	4.86	6.25
Merged-chr3-121891738-1	chr3	121891238	121892238	+	871.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61491.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	17.73	11.98	18.5	10.12	10.73	6.43	6.34	10.17	8.74
Merged-chr4-151071087-1	chr4	151070587	151071587	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-13134.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	12.01	9.22	12.02	16.87	18.66	32.96	14.79	7.96	8.74
Merged-chr15-89211706-2	chr15	89211209	89212209	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027805, exon 1 of 8)	5' UTR (NM_027805, exon 1 of 8)	150.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	108.12	140.54	86.02	107.95	118.03	86.81	148.92	102.58	89.31
Merged-chr8-123064940-1	chr8	123064440	123065440	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_153176)	promoter-TSS (NM_153176)	-568.0	NM_153176	234847.0	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	SPG7, paraplegin matrix AAA peptidase subunit	protein-coding	147.59	152.52	104.52	166.66	141.35	130.21	139.42	121.15	93.68
Merged-chr5-53937364-1	chr5	53936864	53937864	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H2|LTR|ERVL-MaLR	-61159.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	2.29	5.53	12.02	4.05	10.26	3.22	4.22	3.98	6.25
Merged-chr8-60804947-1	chr8	60804447	60805447	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85446.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	6.86	3.23	12.02	5.4	2.8	0.0	1.06	4.42	2.5
Merged-chrX-71811737-2	chrX	71811237	71812237	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4343.0	NM_001290781	67048.0	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	19.45	11.52	5.55	8.1	8.4	4.82	7.39	11.5	10.62
Merged-chr12-103544313-1	chr12	103543813	103544813	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028980, intron 2 of 24)	intron (NM_028980, intron 2 of 24)	11748.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.57	5.53	2.77	4.05	0.93	2.41	3.17	0.0	0.0
Merged-chr4-34642618-2	chr4	34642124	34643124	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151507, intron 8 of 19)	MTE2b|LTR|ERVL-MaLR	27667.0	NM_181406	109093.0	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	56.06	80.64	40.7	87.04	85.84	86.01	65.48	71.63	47.46
Merged-chr18-69666379-2	chr18	69665876	69666876	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-259183.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	40.04	54.37	34.22	61.4	53.65	39.39	63.37	55.27	43.09
Merged-chr1-105664579-1	chr1	105664079	105665079	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013784)	promoter-TSS (NM_013784)	718.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	69.79	72.8	57.35	49.93	64.84	94.85	92.94	85.34	49.34
Merged-chr10-44029736-1	chr10	44029236	44030236	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24890.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.72	2.76	0.0	5.4	2.8	0.0	7.39	2.21	3.75
Merged-chr1-183296632-1	chr1	183296132	183297132	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181732)	promoter-TSS (NM_181732)	-428.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	102.97	126.72	110.99	102.56	135.29	110.92	177.44	169.35	95.55
Merged-chr1-184675919-3	chr1	184675408	184676408	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36589.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	12.01	11.06	0.0	45.21	36.85	20.9	14.79	11.5	8.74
Merged-chr4-5644562-1	chr4	5644062	5645062	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	CpG	472.0	NM_173426	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	21.74	16.13	22.2	37.11	31.72	33.76	24.29	15.92	19.98
Merged-chr14-33101817-2	chr14	33101322	33102322	+	871.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 20 of 58)	intron (NM_001146022, intron 20 of 58)	83244.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	17.73	5.07	4.62	8.77	3.27	8.04	1.06	3.98	5.0
Merged-chrX-105120399-1	chrX	105119899	105120899	+	871.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053201)	promoter-TSS (NM_053201)	21.0	NM_053201	107528.0	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	4.0	1.38	11.1	6.07	2.8	1.61	3.17	4.86	0.0
Merged-chr2-30772114-3	chr2	30771635	30772635	+	870.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29602.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	40.62	36.86	52.72	71.52	38.72	57.87	36.97	34.93	32.48
Merged-chr16-76768758-3	chr16	76768266	76769266	+	870.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	10326.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	21.74	10.6	7.4	23.62	9.33	12.06	22.18	20.78	19.36
Merged-chr10-96706870-3	chr10	96706385	96707385	+	870.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	89884.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	12.01	5.99	9.25	14.84	14.46	11.25	14.79	9.73	7.49
Merged-chr3-144569639-2	chr3	144569132	144570132	+	870.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053102)	promoter-TSS (NM_053102)	584.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	69.22	58.52	54.57	99.86	69.51	48.23	100.34	77.82	46.22
Merged-chr11-23821139-3	chr11	23820657	23821657	+	870.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50187.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	103.54	121.19	66.6	99.86	70.91	67.52	74.99	84.45	53.08
Merged-chr18-39319868-3	chr18	39319362	39320362	+	870.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167383.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.72	6.45	1.85	4.72	1.87	5.63	7.39	9.29	13.12
Merged-chr10-27369968-2	chr10	27369462	27370462	+	870.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 4 of 63)	Lx8b|LINE|L1	-19904.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	5.15	9.68	0.0	4.05	2.8	6.43	3.17	6.19	1.25
Merged-chr16-24826567-3	chr16	24826053	24827053	+	870.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	104698.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	20.02	12.44	27.75	24.96	14.93	36.17	13.73	10.61	6.25
Merged-chr18-44393562-3	chr18	44393007	44394007	+	870.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	13007.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	18.88	12.9	13.87	4.72	8.86	14.47	20.07	5.75	8.12
Merged-chr3-132064162-2	chr3	132063668	132064668	+	870.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21124.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.43	1.38	1.85	6.07	2.8	5.63	6.34	3.1	3.75
Merged-chr6-72379590-2	chr6	72379093	72380093	+	870.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	875.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	41.19	36.86	34.22	34.41	30.32	57.87	42.25	37.58	24.36
Merged-chr2-154714160-2	chr2	154713662	154714662	+	870.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57136.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	32.61	29.49	35.15	48.58	25.19	54.66	16.9	21.22	14.36
Merged-chr1-60016351-4	chr1	60015793	60016793	+	870.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357296, intron 3 of 10)	intron (NM_001357296, intron 3 of 10)	26829.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	46.34	60.36	40.7	85.69	82.11	69.93	61.26	72.07	46.22
Merged-chr14-76690433-3	chr14	76689941	76690941	+	870.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	6.29	7.37	1.85	4.05	1.87	2.41	3.17	1.77	0.0
Merged-chr1-162665292-3	chr1	162664783	162665783	+	870.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7064.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	5.15	5.07	9.25	13.49	9.33	12.06	11.62	7.07	8.12
Merged-chr12-11196426-2	chr12	11195938	11196938	+	870.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_131084, exon 3 of 5)	non-coding (NR_131084, exon 3 of 5)	8064.0	NR_131084	77442.0	Mm.159922	NR_131083	ENSMUSG00000112041	9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	4.58	5.07	2.77	6.75	2.33	16.08	9.51	2.21	0.0
Merged-chr18-56470973-3	chr18	56470455	56471455	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360917, intron 2 of 13)	intron (NM_001360917, intron 2 of 13)	38823.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	9.72	9.68	8.32	7.42	12.6	12.86	5.28	7.96	1.25
Merged-chr11-80209594-3	chr11	80209090	80210090	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163355, intron 1 of 19)	intron (NM_001163355, intron 1 of 19)	535.0	NM_021536	59040.0	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	103.54	118.42	114.69	115.38	97.97	132.63	107.73	78.26	87.43
Merged-chr10-108140922-3	chr10	108140413	108141413	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21487.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	4.0	6.45	5.55	4.72	4.2	9.65	4.22	3.98	6.25
Merged-chr1-105665203-3	chr1	105664689	105665689	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173187, intron 1 of 28)	intron (NM_173187, intron 1 of 28)	1328.0	NM_029349	227446.0	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|Relch|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	35.47	40.55	35.15	36.43	21.93	41.8	38.02	37.58	26.85
Merged-chr6-18845845-3	chr6	18845374	18846374	+	870.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-2761.0	NM_133939	76522.0	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	57.21	52.99	49.95	50.6	51.78	47.42	43.3	44.66	18.11
Merged-chr4-89212410-1	chr4	89211910	89212910	+	870.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	69782.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	3.43	5.53	10.17	8.77	4.2	8.84	3.17	2.65	5.0
Merged-chr13-58388090-3	chr13	58387574	58388574	+	870.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2849.0	NM_027335	70153.0	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	4.0	11.06	4.62	9.45	8.4	5.63	9.51	7.96	3.75
Merged-chr17-36111720-2	chr17	36111246	36112246	+	870.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271005)	promoter-TSS (NM_001271005)	-70.0	NM_001271005	667803.0	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	8.01	0.0	0.0	28.34	20.53	4.82	25.35	21.22	8.12
Merged-chr11-69414620-3	chr11	69414100	69415100	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-925.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	53.77	38.71	31.45	62.75	27.52	30.54	60.2	52.62	28.73
Merged-chr2-153092862-3	chr2	153092362	153093362	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15606.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	35.47	43.77	68.45	31.71	15.39	44.21	57.03	47.31	28.73
Merged-chr11-95006737-3	chr11	95006201	95007201	+	870.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172261, exon 10 of 10)	3' UTR (NM_172261, exon 10 of 10)	-3178.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	11.44	11.98	13.87	2.7	5.13	11.25	5.28	0.88	8.12
Merged-chr7-141057183-3	chr7	141056701	141057701	+	870.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4073.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	16.02	17.51	14.8	17.54	23.33	28.13	44.36	23.43	18.11
Merged-chr17-26437256-1	chr17	26436756	26437756	+	870.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	22291.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	14.87	10.14	1.85	18.22	7.93	11.25	88.72	103.47	73.07
Merged-chr6-6005890-1	chr6	6005390	6006390	+	870.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010063, intron 14 of 16)	CpG	-28497.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	6.86	5.53	6.47	8.77	10.26	6.43	2.11	2.65	3.75
Merged-chr4-43384257-1	chr4	43383757	43384757	+	870.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 1 of 11)	intron (NM_001037709, intron 1 of 11)	2275.0	NM_001037709	100213.0	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	20.59	12.44	22.2	48.58	37.32	12.86	68.65	90.2	38.72
Merged-chr6-90538101-1	chr6	90537601	90538601	+	870.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12692.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	2.29	2.3	3.7	4.05	0.47	6.43	2.11	3.1	3.75
Merged-chr2-174453894-3	chr2	174453440	174454440	+	870.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080971, intron 1 of 3)	intron (NM_001080971, intron 1 of 3)	3345.0	NM_001080971	545486.0	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	10.3	6.91	3.7	4.05	4.67	6.43	8.45	3.98	3.75
Merged-chr2-35732784-2	chr2	35732283	35733283	+	870.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36051.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	101.83	99.53	69.37	73.54	67.64	69.13	89.78	63.67	56.83
Merged-chr8-90977086-3	chr8	90976587	90977587	+	870.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 6 of 39)	intron (NM_177224, intron 6 of 39)	44838.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	21.74	47.0	22.2	23.62	29.86	32.15	26.4	26.97	24.36
Merged-chr16-76406474-2	chr16	76405977	76406977	+	870.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32650.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	30.89	17.97	8.32	27.66	25.19	19.29	42.25	25.2	23.11
Merged-chr8-61931335-2	chr8	61930839	61931839	+	870.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293783, intron 1 of 37)	Lx7|LINE|L1	3252.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	4.0	23.96	17.57	18.22	15.39	14.47	25.35	13.71	23.11
Merged-chr10-9677135-3	chr10	9676631	9677631	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1923.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	4.0	3.23	1.85	4.05	4.67	0.0	6.34	4.86	5.0
Merged-chr4-130921386-3	chr4	130920885	130921885	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	8051.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	85.24	58.98	73.07	100.53	78.84	72.34	98.23	93.74	46.84
Merged-chr3-9849983-3	chr3	9849478	9850478	+	870.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16299.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.0	4.61	3.7	5.4	5.6	14.47	13.73	12.38	15.61
Merged-chr10-120857799-3	chr10	120857284	120858284	+	870.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038023, intron 1 of 2)	intron (NR_038023, intron 1 of 2)	155.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	12.59	17.97	14.8	18.89	23.79	18.49	23.24	14.15	17.49
Merged-chr16-78197670-3	chr16	78197163	78198163	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57791.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	1.72	3.23	1.85	4.72	2.8	0.8	3.17	3.54	2.5
Merged-chr13-3743253-3	chr13	3742739	3743739	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61079.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	10.87	7.83	9.25	10.12	11.66	16.08	8.45	4.42	5.0
Merged-chr2-11712920-3	chr2	11712413	11713413	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	7201.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	15.45	22.12	31.45	14.17	11.66	14.47	6.34	8.4	19.36
Merged-chr14-50931846-3	chr14	50931342	50932342	+	870.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310505)	promoter-TSS (NM_001310505)	-993.0	NM_001310507	219024.0	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161|Pip4p1	transmembrane protein 55b	protein-coding	119.56	117.5	82.32	120.1	137.15	94.85	123.57	151.22	55.58
Merged-chr3-96227549-3	chr3	96227044	96228044	+	870.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18D_MM|LTR|ERVK	6472.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	135.0	121.19	89.72	137.64	104.5	107.71	123.57	145.03	68.7
Merged-chr10-67704853-1	chr10	67704353	67705353	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-132894.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	12.59	8.29	7.4	13.49	5.13	2.41	5.28	5.75	1.25
Merged-chr1-83747672-2	chr1	83747166	83748166	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-339466.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	23.45	18.89	20.35	14.84	20.06	18.49	24.29	21.22	15.61
Merged-chr16-33535117-1	chr16	33534617	33535617	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 2 of 11)	intron (NM_001083902, intron 2 of 11)	16522.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	1.14	1.38	3.7	6.07	2.33	3.22	3.17	1.77	1.25
Merged-chr1-156470376-1	chr1	156469876	156470876	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	3952.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	120.7	131.78	74.0	161.93	157.68	111.73	158.43	169.35	88.68
Merged-chr13-60508462-2	chr13	60508039	60509039	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93408.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	56.06	93.54	54.57	6.07	8.4	3.22	91.89	80.92	34.97
Merged-chr12-64966826-1	chr12	64966326	64967326	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1084.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	60.07	87.55	39.77	71.52	55.51	57.87	50.7	47.31	68.07
Merged-chr3-84582142-2	chr3	84581666	84582666	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	459.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	69.79	84.78	63.82	41.83	40.12	50.64	42.25	44.22	21.86
Merged-chr3-121293370-2	chr3	121292856	121293856	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	intron (NR_155539, intron 1 of 2)	1616.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	32.61	21.66	18.5	12.14	9.8	8.04	34.85	19.9	14.36
Merged-chr17-62558388-3	chr17	62557897	62558897	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	322920.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	14.3	9.68	28.67	17.54	24.26	16.88	27.46	27.86	6.25
Merged-chr7-28593619-3	chr7	28593102	28594102	+	870.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027470, intron 1 of 9)	intron (NM_027470, intron 1 of 9)	4582.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	11.44	15.21	17.57	9.45	3.73	17.68	6.34	5.31	3.75
Merged-chr5-74312009-1	chr5	74311509	74312509	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	116683.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	3.43	3.23	0.0	14.17	6.53	1.61	2.11	2.65	2.5
Merged-chr9-63678308-1	chr9	63677808	63678808	+	870.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	75662.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	3.43	1.84	1.85	8.77	3.73	4.82	4.22	1.33	3.12
Merged-chr4-102605972-2	chr4	102605471	102606471	+	870.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	16128.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	52.06	54.83	59.2	46.56	27.99	60.28	15.84	14.15	11.24
Merged-chr2-128742699-3	chr2	128742267	128743267	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	43852.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	40.62	23.5	49.95	49.93	27.99	37.78	44.36	33.16	24.36
Merged-chr13-34711636-3	chr13	34711140	34712140	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28002.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	6.86	4.61	3.7	15.52	4.2	8.84	6.34	6.19	3.75
Merged-chr15-26365595-3	chr15	26365098	26366098	+	870.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	56550.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.57	3.23	3.7	2.7	12.13	8.04	7.39	5.75	5.0
Merged-chr10-121505421-2	chr10	121504919	121505919	+	870.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29169.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	19.45	7.83	23.12	35.09	25.66	27.33	42.25	32.28	26.23
Merged-chr12-102339317-1	chr12	102338817	102339817	+	870.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	MLT1H|LTR|ERVL-MaLR	55676.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	6.29	10.14	16.65	20.92	14.93	44.21	13.73	5.31	2.5
Merged-chr1-138541743-3	chr1	138541260	138542260	+	870.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021605, intron 3 of 9)	intron (NM_021605, intron 3 of 9)	77997.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	94.39	84.78	54.57	80.29	79.77	69.93	77.1	80.03	28.73
Merged-chr6-66952008-3	chr6	66951541	66952541	+	870.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	55150.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	30.89	35.94	31.45	47.9	32.66	38.58	34.85	32.72	26.23
Merged-chr12-75726525-2	chr12	75726073	75727073	+	870.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	9156.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	48.05	41.01	39.77	62.07	56.91	57.07	47.53	31.39	13.74
Merged-chr13-113479421-2	chr13	113478923	113479923	+	870.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	23421.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.72	12.44	3.7	20.92	7.93	17.68	11.62	5.31	5.0
Merged-chr4-141573778-2	chr4	141573247	141574247	+	870.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR37A|LTR|ERV1	26177.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	6.29	6.91	14.8	14.84	5.6	5.63	9.51	4.42	3.75
Merged-chr14-36862529-2	chr14	36861990	36862990	+	870.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57045.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.0	4.15	8.32	4.05	0.93	5.63	2.11	3.98	1.25
Merged-chr3-115816073-3	chr3	115815567	115816567	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71992.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	59.49	44.7	11.1	120.1	130.16	66.71	48.58	63.67	12.49
Merged-chr19-14507811-3	chr19	14507309	14508309	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-69303.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	13.73	19.81	22.2	12.82	12.13	25.72	24.29	19.01	11.87
Merged-chr12-82122701-3	chr12	82122201	82123201	+	870.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47315.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.43	3.23	1.85	8.77	8.86	9.65	4.22	7.52	6.87
Merged-chr10-16989772-1	chr10	16989272	16990272	+	870.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038020, intron 2 of 8)	intron (NR_038020, intron 2 of 8)	106010.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.01	5.07	12.02	4.05	3.73	1.61	7.39	10.17	6.25
Merged-chr14-64310045-3	chr14	64309546	64310546	+	870.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	106910.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	6.29	4.15	9.25	16.87	7.93	11.25	8.45	5.31	6.25
Merged-chr15-102451089-3	chr15	102450595	102451595	+	870.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356575, intron 7 of 11)	intron (NM_001356575, intron 7 of 11)	5728.0	NM_144547	110542.0	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	18.88	6.91	16.65	31.04	36.39	12.86	22.18	15.48	4.37
Merged-chr15-25773948-3	chr15	25773437	25774437	+	870.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001353141)	promoter-TSS (NM_001353141)	-76.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.15	3.23	12.95	14.17	8.4	15.27	8.45	4.42	8.74
Merged-chr9-92458653-1	chr9	92458153	92459153	+	870.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178711, intron 1 of 8)	intron (NM_178711, intron 1 of 8)	1275.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	7.44	9.22	3.7	10.12	12.6	7.23	5.28	2.21	0.62
Merged-chr1-191965262-3	chr1	191964764	191965764	+	870.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12106.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	8.01	6.45	3.7	8.1	5.6	9.65	2.11	4.42	5.0
Merged-chr16-49909737-2	chr16	49909253	49910253	+	870.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-46077.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	19.45	18.43	3.7	42.51	21.93	20.9	35.91	15.92	17.49
Merged-chr10-37194267-4	chr10	37193763	37194763	+	870.2291869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55337.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	166.47	192.15	153.54	170.7	160.95	171.21	134.14	157.85	128.65
Merged-chr15-83561304-3	chr15	83560831	83561831	+	870.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-2242.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	10.87	16.13	18.5	14.17	15.39	12.86	16.9	13.27	14.99
Merged-chr1-92679020-3	chr1	92678529	92679529	+	870.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30188.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.15	8.75	6.47	6.75	4.67	9.65	7.39	9.29	6.25
Merged-chr2-117122879-3	chr2	117122411	117123411	+	870.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	1840.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	124.14	147.45	87.87	117.4	104.03	92.44	135.19	131.77	106.79
Merged-chr17-26885184-3	chr17	26884699	26885699	+	870.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31892.0	NM_053173	16580.0	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	29.75	25.34	32.37	33.74	21.46	44.21	42.25	40.68	19.36
Merged-chr13-49189185-3	chr13	49188666	49189666	+	870.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	1619.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	355.25	324.85	218.29	379.19	353.15	410.74	453.1	444.82	238.57
Merged-chr7-141170090-3	chr7	141169588	141170588	+	870.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 1 of 9)	B1_Mur3|SINE|Alu	-1152.0	NM_145135	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	30.89	44.7	77.7	41.83	44.78	26.53	58.09	61.9	32.48
Merged-chr19-33101511-3	chr19	33101005	33102005	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55607.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	35.47	20.74	16.65	65.45	34.99	36.97	30.63	16.36	18.11
Merged-chr2-32784450-3	chr2	32783946	32784946	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025619)	promoter-TSS (NM_025619)	-41.0	NM_025619	227736.0	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	25.74	13.36	1.85	16.19	8.4	4.02	5.28	4.86	8.12
Merged-chr9-7869412-3	chr9	7868901	7869901	+	870.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	3769.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	133.29	146.53	86.02	113.35	90.97	114.14	162.65	167.58	97.43
Merged-chr8-70893778-3	chr8	70893284	70894284	+	870.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029751)	TTS (NM_029751)	-1027.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	5.15	4.61	0.0	2.7	4.67	6.43	8.45	2.21	7.49
Merged-chr5-30840916-3	chr5	30840416	30841416	+	870.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-20891.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	13.16	17.05	16.65	17.54	15.39	17.68	28.52	19.46	9.99
Merged-chr11-119955634-3	chr11	119955117	119956117	+	870.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12525.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	55.49	29.49	21.27	34.41	31.72	31.35	34.85	26.09	23.73
Merged-chr10-39412306-3	chr10	39411760	39412760	+	870.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	42461.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	78.37	65.89	65.67	111.33	64.84	54.66	74.99	56.16	38.1
Merged-chr6-84640918-2	chr6	84640406	84641406	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-46998.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	4.58	5.07	3.7	12.82	6.06	11.25	9.51	3.54	11.24
Merged-chr16-35932397-3	chr16	35931903	35932903	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013371, exon 3 of 5)	exon (NM_001013371, exon 3 of 5)	-6067.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	12.01	8.29	13.87	11.47	5.13	12.86	21.12	11.05	11.24
Merged-chr7-67422028-3	chr7	67421513	67422513	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49155.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	16.02	15.67	5.55	16.87	14.0	22.51	17.96	15.92	6.25
Merged-chr11-101785366-3	chr11	101784879	101785879	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316366)	promoter-TSS (NM_001316366)	-69.0	NM_001316365	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	4.58	1.38	10.17	3.37	1.4	3.22	3.17	3.98	1.25
Merged-chr16-70297829-1	chr16	70297329	70298329	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16120.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.57	0.46	9.25	1.35	2.33	0.0	3.17	2.21	0.62
Merged-chr10-12698059-1	chr10	12697559	12698559	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011682, exon 24 of 74)	exon (NM_011682, exon 24 of 74)	163676.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.72	6.91	3.7	8.1	5.13	2.41	11.62	11.5	4.37
Merged-chr12-84450503-1	chr12	84450003	84451003	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134042, intron 1 of 11)	intron (NM_134042, intron 1 of 11)	521.0	NM_134042	104776.0	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	48.62	41.93	22.2	31.04	44.32	40.19	35.91	27.41	25.61
Merged-chr13-55517261-1	chr13	55516761	55517761	+	870.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3815.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	1.14	5.53	0.0	0.67	2.8	3.22	0.0	3.98	0.62
Merged-chr5-92309532-1	chr5	92309032	92310032	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172713, intron 1 of 21)	intron (NM_172713, intron 1 of 21)	492.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	102.4	78.33	65.67	126.17	118.96	83.59	110.9	108.33	32.48
Merged-chr13-37121797-1	chr13	37121297	37122297	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71553.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	5.15	1.84	9.25	4.05	4.2	4.82	2.11	0.88	3.75
Merged-chr3-95142008-1	chr3	95141508	95142508	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	352.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	92.67	91.7	111.92	85.69	87.24	81.18	123.57	141.94	79.32
Merged-chr5-53187371-1	chr5	53186871	53187871	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172710, intron 3 of 23)	UCON28b|Unknown|Unknown	26081.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.0	6.91	15.72	12.82	15.39	16.88	6.34	1.77	5.0
Merged-chr15-31474159-3	chr15	31473689	31474689	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 20 of 25)	intron (NM_172606, intron 20 of 25)	-20500.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	13.73	28.11	25.9	30.36	29.86	33.76	48.58	54.39	45.59
Merged-chr16-89866640-1	chr16	89866140	89867140	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 7 of 27)	intron (NM_009384, intron 7 of 27)	-48288.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.0	5.99	12.02	11.47	3.27	1.61	6.34	1.33	5.0
Merged-chr15-103087456-1	chr15	103086956	103087956	+	870.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	53061.0	NM_013553	15423.0	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	2.29	1.38	0.0	4.05	1.87	4.02	0.0	1.33	0.0
Merged-chr13-112004336-2	chr13	112003835	112004835	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136399.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.15	3.23	4.62	6.07	8.86	19.29	6.34	0.88	5.0
Merged-chr6-106443457-1	chr6	106442957	106443957	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	305580.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	1.72	6.45	5.55	6.07	5.13	11.25	9.51	13.71	8.74
Merged-chr9-114498412-1	chr9	114497912	114498912	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1868.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	2.29	1.38	3.7	4.05	2.33	2.41	2.11	0.88	2.5
Merged-chr9-8017412-1	chr9	8016912	8017912	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12816.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	23.45	29.03	12.95	18.89	23.79	17.68	3.17	0.0	1.87
Merged-chr12-31350419-1	chr12	31349919	31350919	+	870.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007861, intron 1 of 13)	intron (NM_007861, intron 1 of 13)	1052.0	NM_007861	13382.0	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	35.47	57.14	51.8	39.13	26.59	32.96	38.02	33.16	23.73
Merged-chr11-97663174-4	chr11	97662672	97663672	+	869.9761960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139311)	promoter-TSS (NM_139311)	-240.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	83.52	77.87	54.57	89.74	43.39	43.4	102.45	64.11	52.46
Merged-chr19-40737317-2	chr19	40736805	40737805	+	869.9500119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77535.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	6.86	4.61	11.1	2.7	6.06	1.61	3.17	1.77	7.49
Merged-chr15-50870907-3	chr15	50870407	50871407	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032000, intron 1 of 5)	MIRb|SINE|MIR	18142.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	185.92	194.45	84.17	165.31	124.09	89.22	74.99	93.3	61.83
Merged-chr19-8771056-3	chr19	8770568	8771568	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025791)	promoter-TSS (NM_025791)	72.0	NM_025791	66836.0	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	73.79	102.75	118.39	66.8	67.18	76.36	89.78	77.82	66.82
Merged-chr3-146331116-3	chr3	146330616	146331616	+	869.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47828.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	4.0	1.38	3.7	1.35	2.8	3.22	0.0	2.21	2.5
Merged-chr9-50661659-3	chr9	50661155	50662155	+	869.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	5.15	11.06	16.65	3.37	5.6	7.23	22.18	16.36	13.12
Merged-chr14-25461023-3	chr14	25460507	25461507	+	869.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	CpG	1822.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	258.0	224.4	198.87	217.26	235.59	254.0	208.07	193.67	99.92
Merged-chr4-126136933-2	chr4	126136452	126137452	+	869.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 8 of 10)	intron (NM_028800, intron 8 of 10)	-11051.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	10.3	8.29	14.8	20.92	18.66	26.53	6.34	7.52	8.74
Merged-chr15-9128705-2	chr15	9128183	9129183	+	869.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11771.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	80.66	119.8	83.25	35.09	39.19	24.92	13.73	8.84	15.61
Merged-chr1-124071878-2	chr1	124071391	124072391	+	869.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26332.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	22.88	28.11	39.77	17.54	19.13	16.08	12.67	17.69	21.86
Merged-chr11-83602159-3	chr11	83601676	83602676	+	869.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	L2a|LINE|L2	-9089.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	36.04	28.11	36.07	102.56	94.7	98.87	83.44	56.6	20.61
Merged-chr15-63625022-3	chr15	63624528	63625528	+	869.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-145420.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	13.73	8.75	10.17	19.57	14.93	16.88	10.56	9.29	9.37
Merged-chr2-102924709-2	chr2	102924210	102925210	+	869.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23045.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	18.88	4.15	11.1	47.23	24.26	33.76	12.67	12.82	13.74
Merged-chr3-90491508-2	chr3	90491018	90492018	+	869.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133854)	promoter-TSS (NM_133854)	-505.0	NM_133854	20615.0	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	22.31	14.75	31.45	40.48	33.12	18.49	48.58	49.08	22.48
Merged-chr10-11323760-2	chr10	11323259	11324259	+	869.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19686.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	5.15	3.69	3.7	10.12	7.93	0.0	5.28	4.86	7.49
Merged-chr12-76887008-2	chr12	76886498	76887498	+	869.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145927, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	49531.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	11.44	5.53	11.1	4.72	7.0	8.04	9.51	11.05	5.0
Merged-chr16-44986287-2	chr16	44985802	44986802	+	869.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	42624.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	8.01	11.52	5.55	12.82	3.73	12.86	3.17	1.77	6.25
Merged-chr9-63916126-1	chr9	63915626	63916626	+	869.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105933.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.72	2.76	0.0	8.1	2.33	4.82	3.17	0.44	1.25
Merged-chr1-59482794-3	chr1	59482282	59483282	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008057, exon 1 of 1)	5' UTR (NM_008057, exon 1 of 1)	635.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	68.07	57.6	61.05	58.7	45.25	49.83	74.99	71.19	49.96
Merged-chr16-33375669-3	chr16	33375168	33376168	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5068.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	22.88	25.34	27.75	51.28	25.19	23.31	34.85	33.16	33.1
Merged-chr16-78237898-3	chr16	78237375	78238375	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17579.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	42.9	28.57	9.25	131.57	95.17	48.23	105.62	136.19	26.23
Merged-chr4-35240068-3	chr4	35239561	35240561	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14181.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	11.44	4.61	5.55	8.77	4.67	7.23	11.62	5.31	2.5
Merged-chr1-55667141-3	chr1	55666636	55667636	+	869.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	261190.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	17.73	11.52	7.4	10.12	4.67	8.04	21.12	22.55	16.86
Merged-chr5-64809528-3	chr5	64809043	64810043	+	869.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	6020.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	127.57	149.75	115.62	145.74	102.63	93.24	120.41	160.51	64.95
Merged-chr17-24708070-2	chr17	24707576	24708576	+	869.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145396)	promoter-TSS (NM_145396)	-423.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	192.78	148.37	182.22	86.36	71.38	86.01	180.61	252.48	109.29
Merged-chr9-104660010-2	chr9	104659504	104660504	+	869.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	90521.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	13.16	23.04	1.85	32.39	34.06	28.94	5.28	3.1	2.5
Merged-chr2-164641321-2	chr2	164640823	164641823	+	869.724976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2521.0	NM_001012723	277345.0	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	19.45	10.6	10.17	21.59	8.86	16.08	28.52	25.2	19.36
Merged-chrX-99135095-3	chrX	99134595	99135595	+	869.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010110)	promoter-TSS (NM_010110)	-966.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	6.86	6.91	6.47	12.82	5.6	10.45	6.34	6.63	6.25
Merged-chr10-60391146-2	chr10	60390631	60391631	+	869.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-8595.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	8.01	6.45	0.0	19.57	14.0	14.47	7.39	7.52	7.49
Merged-chr11-4873942-3	chr11	4873441	4874441	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008698)	promoter-TSS (NM_008698)	-10.0	NM_008698	18082.0	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1	protein-coding	2.29	3.69	5.55	2.02	0.93	3.22	2.11	1.77	1.25
Merged-chr11-85525802-1	chr11	85525302	85526302	+	869.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	172638.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	68.65	46.54	37.92	224.01	219.26	129.41	106.67	130.44	43.09
Merged-chr2-13272986-3	chr2	13272473	13273473	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1558.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	7.44	21.66	21.27	14.17	12.13	12.86	24.29	12.82	9.37
Merged-chr11-70506627-3	chr11	70506129	70507129	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029360, intron 1 of 4)	intron (NM_029360, intron 1 of 4)	1355.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	16.59	11.06	7.4	12.82	7.0	7.23	10.56	6.19	11.24
Merged-chr9-115746625-3	chr9	115746132	115747132	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-162823.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	6.29	9.68	10.17	13.49	6.06	9.65	32.74	25.2	13.74
Merged-chr11-69122352-1	chr11	69121852	69122852	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033041, intron 3 of 3)	CpG	1899.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	29.17	25.34	25.9	32.39	14.46	12.86	41.19	31.39	28.73
Merged-chrX-162652617-1	chrX	162652117	162653117	+	869.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	MTE2b|LTR|ERVL-MaLR	-8959.0	NM_001359102	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	1.72	1.38	1.85	4.05	5.6	0.0	2.11	1.33	1.25
Merged-chr7-114083947-1	chr7	114083447	114084447	+	869.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	33834.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	10.3	5.99	8.32	6.07	3.27	6.43	16.9	5.75	3.12
Merged-chr12-73613309-3	chr12	73612797	73613797	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	28501.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	14.87	17.51	14.8	37.11	18.19	28.13	31.69	25.65	10.62
Merged-chr13-43531526-3	chr13	43530937	43531937	+	869.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28754.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	12.59	12.44	4.62	70.85	36.39	52.25	17.96	15.48	8.12
Merged-chr17-34398274-3	chr17	34397756	34398756	+	869.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001177)	promoter-TSS (NM_001001177)	-564.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	68.65	53.45	80.47	18.22	13.53	18.49	62.31	38.91	23.11
Merged-chr3-89456904-3	chr3	89456384	89457384	+	869.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310640, intron 1 of 3)	intron (NM_001310640, intron 1 of 3)	-2234.0	NM_026784	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	3.43	1.38	0.0	2.02	3.27	1.61	3.17	2.65	1.25
Merged-chr6-28421034-3	chr6	28420582	28421582	+	869.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028900, exon 1 of 2)	exon (NM_028900, exon 1 of 2)	642.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	42.33	42.39	33.3	43.86	36.39	36.97	66.54	57.04	16.86
Merged-chr10-130311812-2	chr10	130311398	130312398	+	869.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-10954.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	4.0	6.45	3.7	2.7	3.27	6.43	5.28	5.75	2.5
Merged-chr12-54993813-3	chr12	54993319	54994319	+	869.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7483.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	33.18	28.57	16.65	57.35	29.39	29.74	19.01	28.3	20.61
Merged-chr8-3672196-4	chr8	3671661	3672661	+	869.5714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357661, intron 1 of 1)	intron (NM_001357661, intron 1 of 1)	230.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	3.43	5.53	4.62	8.1	4.67	11.25	5.28	3.98	0.0
Merged-chr5-64852899-3	chr5	64852394	64853394	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	49371.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	24.6	20.27	21.27	20.92	13.53	28.13	41.19	27.86	13.74
Merged-chr1-64956697-3	chr1	64956117	64957117	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 1 of 7)	CpG	207.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	25.17	23.5	11.1	34.41	28.46	24.92	28.52	38.03	18.74
Merged-chr7-132347773-3	chr7	132347223	132348223	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30495.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	21.74	25.8	37.0	32.39	25.19	42.6	25.35	21.67	19.98
Merged-chr2-11589524-3	chr2	11589048	11590048	+	869.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 7 of 11)	intron (NM_152824, intron 7 of 11)	13651.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	110.41	98.61	61.05	121.45	85.84	127.8	123.57	127.79	91.81
Merged-chr17-73936800-3	chr17	73936292	73937292	+	869.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 4 of 35)	intron (NM_011723, intron 4 of 35)	13404.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	202.51	181.09	129.49	237.5	199.67	149.5	192.23	204.72	60.58
Merged-chr3-132870271-3	chr3	132869773	132870773	+	869.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	8323.0	NR_102297	101243624.0	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	4.58	0.92	5.55	6.75	4.67	0.0	3.17	7.07	3.75
Merged-chr19-37265967-2	chr19	37265469	37266469	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1874.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	8.01	5.53	3.7	4.72	1.87	6.43	6.34	7.96	1.87
Merged-chr3-7612935-2	chr3	7612503	7613503	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313890)	promoter-TSS (NM_001313890)	-110.0	NM_001313890	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	1.72	1.84	9.25	4.05	0.47	1.61	10.56	8.4	7.49
Merged-chr17-34633451-2	chr17	34632964	34633964	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3778.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	48.05	43.31	51.8	97.16	49.92	114.14	119.35	111.87	84.94
Merged-chr10-84390917-1	chr10	84390417	84391417	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	49554.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	69.79	62.21	29.6	51.28	37.79	20.9	65.48	50.85	28.73
Merged-chr14-31392095-5	chr14	31391621	31392621	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	25556.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	264.29	293.52	184.07	321.17	259.38	184.07	258.77	306.86	99.92
Merged-chr4-103039965-2	chr4	103039466	103040466	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146254, intron 16 of 16)	intron (NM_146254, intron 16 of 16)	-13124.0	NM_001290648	23919.0	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	12.01	6.45	3.7	8.1	8.4	10.45	10.56	3.1	6.25
Merged-chr9-50970599-2	chr9	50970106	50971106	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	38467.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	9.72	14.75	12.95	16.19	7.0	12.86	19.01	7.96	8.12
Merged-chr8-98999357-1	chr8	98998857	98999857	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12530.0	NR_110579	100873092.0	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	1.72	5.53	9.25	3.37	6.53	4.82	2.11	2.65	8.74
Merged-chr16-35947105-3	chr16	35946583	35947583	+	869.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030253, intron 3 of 10)	B2_Mm1t|SINE|B2	-8056.0	NM_001013371	209200.0	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	16.59	17.05	7.4	20.92	3.73	8.04	26.4	20.34	6.87
Merged-chr11-30224755-1	chr11	30224255	30225255	+	869.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4983.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.58	5.53	1.85	3.37	2.8	1.61	1.06	3.1	5.0
Merged-chr18-44780973-3	chr18	44780472	44781472	+	869.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 1 of 18)	intron (NM_001085373, intron 1 of 18)	31210.0	NM_001085373	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	10.87	9.68	11.1	6.75	3.73	3.22	6.34	4.86	14.99
Merged-chr1-191329149-3	chr1	191328652	191329652	+	869.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	3187.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	43.48	49.3	31.45	44.53	31.72	34.56	52.81	53.5	31.23
Merged-chr9-77806938-3	chr9	77806443	77807443	+	869.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52408.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.0	7.83	3.7	6.75	14.93	6.43	8.45	10.17	1.25
Merged-chr7-114415204-4	chr7	114414662	114415662	+	869.4583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011055)	promoter-TSS (NM_011055)	-1.0	NR_029438	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	15.45	4.61	6.47	29.69	18.66	24.11	13.73	1.77	3.75
Merged-chr13-30750663-3	chr13	30750162	30751162	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013674, exon 2 of 9)	exon (NM_013674, exon 2 of 9)	1429.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	22.88	11.06	11.1	20.24	12.13	14.47	17.96	9.29	2.5
Merged-chr1-136430362-3	chr1	136429860	136430860	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026500, intron 4 of 7)	intron (NM_026500, intron 4 of 7)	-14841.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	20.02	11.52	9.25	14.84	11.2	23.31	9.51	11.94	8.74
Merged-chr11-72467219-3	chr11	72466746	72467746	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	7781.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	64.07	41.47	33.3	56.0	35.45	49.03	63.37	70.3	41.84
Merged-chr1-152038442-4	chr1	152037931	152038931	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	51889.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	22.88	15.21	1.85	31.71	8.4	1.61	9.51	11.05	2.5
Merged-chr9-119963426-3	chr9	119962907	119963907	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028735, intron 21 of 28)	intron (NM_028735, intron 21 of 28)	19616.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.57	3.69	0.0	6.75	1.87	6.43	4.22	2.65	3.75
Merged-chr12-81657818-3	chr12	81657305	81658305	+	869.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26556.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	29.17	17.05	18.5	8.77	5.6	11.25	14.79	13.27	8.74
Merged-chr3-31133851-3	chr3	31133344	31134344	+	869.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16076.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	49.2	40.55	40.7	40.48	33.12	64.3	61.26	40.68	57.46
Merged-chr17-67382120-2	chr17	67381625	67382625	+	869.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27634.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.29	4.61	3.7	10.12	5.13	7.23	5.28	5.75	7.49
Merged-chr11-114653872-3	chr11	114653388	114654388	+	869.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14655.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	6.86	1.84	9.25	5.4	3.27	6.43	5.28	7.96	6.25
Merged-chr13-100403123-2	chr13	100402612	100403612	+	869.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49752.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	25.17	27.65	29.6	12.82	33.12	48.23	88.72	97.72	59.95
Merged-chr5-121385082-3	chr5	121384584	121385584	+	869.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172275, intron 1 of 11)	intron (NM_172275, intron 1 of 11)	325.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	332.94	309.19	217.36	347.48	276.17	198.54	320.02	359.92	214.21
Merged-chr1-171285466-2	chr1	171284950	171285950	+	869.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013919, intron 3 of 12)	intron (NM_013919, intron 3 of 12)	2511.0	NM_013919	30941.0	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	33.18	58.52	67.52	44.53	49.45	77.97	40.14	49.08	28.73
Merged-chr4-142063163-3	chr4	142062652	142063652	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-21146.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	11.44	7.37	12.02	16.87	5.13	19.29	26.4	11.05	15.61
Merged-chr4-126430481-3	chr4	126429974	126430974	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153402)	promoter-TSS (NM_153402)	-932.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	176.76	206.43	145.22	143.71	159.55	88.42	174.27	210.91	112.42
Merged-chr5-45926149-3	chr5	45925649	45926649	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110478)	TTS (NR_110478)	6260.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	33.18	54.83	25.9	58.7	70.91	40.19	61.26	41.56	53.08
Merged-chr9-120037581-3	chr9	120037053	120038053	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13955.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	21.74	18.89	35.15	29.69	37.32	29.74	28.52	38.03	11.24
Merged-chr13-9750007-3	chr13	9749495	9750495	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	13815.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	8.58	6.91	10.17	10.12	7.0	11.25	13.73	14.59	8.74
Merged-chr6-29696132-3	chr6	29695620	29696620	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	1906.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	7.44	4.15	2.77	10.8	2.8	9.65	6.34	5.75	0.0
Merged-chr11-95749819-3	chr11	95749325	95750325	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201609, exon 1 of 5)	exon (NM_201609, exon 1 of 5)	758.0	NM_201609	268469.0	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	77.8	58.52	58.27	55.33	41.52	47.42	51.75	48.2	47.46
Merged-chr10-41930117-1	chr10	41929617	41930617	+	869.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	RSINE1|SINE|B4	42678.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	6.29	4.61	1.85	10.12	6.06	3.22	15.84	8.84	6.25
Merged-chr8-4493937-3	chr8	4493428	4494428	+	869.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 1 of 10)	intron (NM_026058, intron 1 of 10)	523.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	18.88	31.33	16.65	14.84	19.13	22.51	25.35	12.82	23.73
Merged-chr14-30550035-3	chr14	30549507	30550507	+	869.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009388, intron 1 of 13)	intron (NM_009388, intron 1 of 13)	876.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	65.21	64.51	65.67	70.17	53.18	123.78	80.27	72.96	46.22
Merged-chr14-72983652-3	chr14	72983153	72984153	+	869.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41950.0	NR_027860	668489.0	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	5.15	5.99	5.55	10.8	4.2	8.84	1.06	1.77	3.75
Merged-chrX-155511626-3	chrX	155511137	155512137	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	111690.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.0	3.69	3.7	5.4	1.87	1.61	2.11	4.86	0.0
Merged-chr11-22843065-3	chr11	22842575	22843575	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	16660.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	98.97	82.02	70.3	98.51	69.98	80.38	108.79	133.98	53.08
Merged-chr3-123507041-3	chr3	123506598	123507598	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008939)	TTS (NM_008939)	968.0	NR_028573	100306957.0	Mm.260791	NR_028573	ENSMUSG00000092730	Snora24	ACA24	small nucleolar RNA, H/ACA box 24	snoRNA	33.75	32.72	24.97	25.64	15.39	17.68	19.01	25.65	13.74
Merged-chr16-58524622-3	chr16	58524119	58525119	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357435)	promoter-TSS (NM_001357435)	-366.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	6.29	5.07	3.7	6.75	2.8	6.43	4.22	5.31	3.75
Merged-chr11-4220633-3	chr11	4220144	4221144	+	869.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028022, intron 4 of 8)	intron (NM_028022, intron 4 of 8)	2393.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	2.86	3.69	3.7	4.72	1.4	0.0	5.28	1.77	0.62
Merged-chr10-111471344-3	chr10	111470819	111471819	+	869.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1908.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.72	6.45	7.4	4.72	6.53	3.22	7.39	2.21	2.5
Merged-chr18-21640296-1	chr18	21639796	21640796	+	869.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081403, intron 1 of 7)	L1MB8|LINE|L1	-11269.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	10.87	10.14	9.25	20.92	10.73	20.09	2.11	0.88	0.0
Merged-chr11-86578450-2	chr11	86577935	86578935	+	869.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5723.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	263.14	246.52	238.64	269.89	255.18	263.64	270.38	310.4	196.1
Merged-chr2-167004868-5	chr2	167004325	167005325	+	869.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAG)n|Simple_repeat|Simple_repeat	-8526.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	32.04	12.9	21.27	25.64	6.53	31.35	24.29	18.13	9.99
Merged-chr3-37640954-3	chr3	37640451	37641451	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011896, intron 2 of 2)	CpG-9115	1004.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	38.33	21.2	12.95	2.7	7.46	0.0	1.06	2.65	0.0
Merged-chr9-89268989-3	chr9	89268496	89269496	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57612.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	33.75	33.64	37.92	33.06	30.32	70.73	36.97	22.55	22.48
Merged-chr3-88464604-3	chr3	88464111	88465111	+	869.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-3429.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	6.86	4.61	5.55	6.07	3.27	3.22	7.39	5.31	6.87
Merged-chr8-35549280-2	chr8	35548790	35549790	+	869.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38508.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	6.29	3.69	7.4	4.05	8.86	24.11	0.0	1.77	1.25
Merged-chr17-85189783-3	chr17	85189289	85190289	+	869.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028576, intron 3 of 10)	intron (NM_028576, intron 3 of 10)	99089.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	1.14	1.38	7.4	2.02	1.4	1.61	2.11	1.33	5.0
Merged-chr13-91636999-3	chr13	91636509	91637509	+	869.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-104512.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	32.61	26.26	12.95	26.99	30.32	13.66	21.12	16.36	11.87
Merged-chr12-76676578-1	chr12	76676078	76677078	+	869.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 1 of 35)	intron (NM_013675, intron 1 of 35)	33969.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	2.29	1.84	0.0	8.77	4.67	9.65	7.39	7.52	8.74
Merged-chr16-24361935-3	chr16	24361458	24362458	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31392.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	7.44	3.69	4.62	2.7	1.4	4.82	4.22	4.42	7.49
Merged-chr11-50227364-3	chr11	50226858	50227858	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	2023.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	49.2	53.45	47.17	43.18	31.26	57.07	59.15	45.54	29.35
Merged-chr5-35689073-3	chr5	35688561	35689561	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-9281.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	6.86	3.69	0.0	5.4	1.4	5.63	7.39	1.33	4.37
Merged-chr19-24967163-3	chr19	24966657	24967657	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5541.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	120.7	160.81	87.87	143.04	134.35	114.14	147.87	213.57	95.55
Merged-chr6-38342419-3	chr6	38341861	38342861	+	869.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	intron (NM_028864, intron 1 of 8)	12242.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	76.66	75.57	118.39	55.33	39.19	52.25	103.51	106.12	59.33
Merged-chr7-144991960-2	chr7	144991466	144992466	+	869.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-52041.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.0	3.69	13.87	10.12	6.53	4.82	14.79	9.73	1.25
Merged-chr11-50931619-3	chr11	50931103	50932103	+	869.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013744)	promoter-TSS (NM_013744)	32.0	NM_013744	27274.0	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0.57	5.99	7.4	12.82	9.33	4.82	8.45	4.42	1.25
Merged-chr12-84189262-3	chr12	84188765	84189765	+	869.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	4750.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	49.2	29.49	49.02	26.31	15.86	20.09	45.42	34.93	20.61
Merged-chr7-28867814-3	chr7	28867305	28868305	+	869.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3419.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	7.44	6.45	1.85	7.42	11.66	9.65	8.45	3.98	0.62
Merged-chr2-130750698-3	chr2	130750204	130751204	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 20 of 36)	RMER10A|LTR|ERVL	-53185.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	10.87	3.69	1.85	5.4	4.2	2.41	8.45	6.19	7.49
Merged-chr1-144203115-3	chr1	144202611	144203611	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25739.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	11.44	10.6	0.0	16.87	8.86	12.86	6.34	4.42	7.49
Merged-chr3-87349896-3	chr3	87349404	87350404	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-7977.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	22.88	32.72	21.27	29.69	29.39	45.01	58.09	51.73	36.85
Merged-chr12-16900959-3	chr12	16900451	16901451	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	5973.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	17.16	28.11	12.02	25.64	19.59	30.54	26.4	25.65	24.98
Merged-chr8-3659059-3	chr8	3658569	3659569	+	869.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022984)	TTS (NM_022984)	3299.0	NM_022984	57264.0	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	5.15	4.15	3.7	5.4	1.87	3.22	11.62	5.75	9.37
Merged-chr15-103165623-3	chr15	103165124	103166124	+	869.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2340.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	6.86	4.61	1.85	5.4	5.13	2.41	4.22	6.63	8.74
Merged-chr11-107675873-3	chr11	107675367	107676367	+	869.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38145.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	91.53	88.01	61.05	84.34	76.51	77.16	99.28	133.53	60.58
Merged-chr11-121082421-3	chr11	121081921	121082921	+	869.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1282.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	60.07	39.63	49.02	45.88	35.92	50.64	27.46	49.52	49.96
Merged-chr17-6001568-3	chr17	6001050	6002050	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357667, intron 4 of 24)	intron (NM_001357667, intron 4 of 24)	-6030.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	6.29	5.99	0.0	14.17	9.33	1.61	3.17	6.19	0.0
Merged-chrX-167131418-3	chrX	167130912	167131912	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61042.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	26.89	24.88	8.32	31.04	14.0	41.8	23.24	32.28	8.12
Merged-chr10-56808947-3	chr10	56808442	56809442	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	376961.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	11.44	13.36	16.65	11.47	7.93	12.86	4.22	6.63	7.49
Merged-chr7-67229090-3	chr7	67228603	67229603	+	869.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175215)	TTS (NM_175215)	6487.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	9.72	9.22	7.4	5.4	6.53	4.82	2.11	4.86	7.49
Merged-chr19-3324087-3	chr19	3323631	3324631	+	869.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	CpG	830.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	180.2	214.26	185.92	163.96	227.66	172.81	152.09	214.45	146.76
Merged-chr8-71296985-3	chr8	71296510	71297510	+	869.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	24296.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	272.87	244.68	210.89	205.79	193.6	251.59	215.46	256.46	155.51
Merged-chr2-166744673-3	chr2	166744173	166745173	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30841.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	22.31	12.9	13.87	16.87	9.8	9.65	21.12	19.01	8.74
Merged-chr16-20693684-2	chr16	20693197	20694197	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001304432)	TTS (NM_001304432)	-1360.0	NM_133778	78408.0	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	115.55	79.25	65.67	79.62	50.38	41.8	72.88	61.46	38.1
Merged-chr5-3501313-3	chr5	3500805	3501805	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-42528.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	295.18	278.31	99.89	275.96	244.45	173.62	217.57	317.48	133.65
Merged-chr3-133626818-3	chr3	133626276	133627276	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82386.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	2.29	5.07	5.55	8.1	7.93	1.61	6.34	1.33	4.37
Merged-chr8-109019727-3	chr8	109019215	109020215	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-55507.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	12.01	3.23	12.95	8.77	1.87	3.22	14.79	7.07	5.0
Merged-chr7-135710469-3	chr7	135709974	135710974	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081117, intron 4 of 13)	intron (NM_001081117, intron 4 of 13)	5905.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	20.02	23.5	25.9	20.92	7.93	20.9	11.62	17.69	19.98
Merged-chr11-75535286-1	chr11	75534786	75535786	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	3174.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	65.79	57.14	59.2	58.7	56.45	66.71	90.83	102.14	38.1
Merged-chr2-121170015-1	chr2	121169515	121170515	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290819, exon 1 of 5)	exon (NM_001290819, exon 1 of 5)	1110.0	NM_001290819	99334.0	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	20.02	28.11	23.12	27.66	21.93	52.25	27.46	21.22	38.72
Merged-chr2-104595215-2	chr2	104594721	104595721	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037326, intron 1 of 1)	intron (NM_001037326, intron 1 of 1)	4737.0	NM_001037326	228410.0	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	5.72	6.91	10.17	6.75	4.67	22.51	6.34	8.84	7.49
Merged-chr7-99155476-1	chr7	99154976	99155976	+	869.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026384, intron 7 of 7)	intron (NM_026384, intron 7 of 7)	-14332.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.14	0.46	0.0	2.7	0.0	0.0	2.11	1.33	0.0
Merged-chr6-94536517-2	chr6	94536018	94537018	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 5 of 9)	intron (NM_026255, intron 5 of 9)	36204.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	3.43	3.23	12.95	6.07	4.2	4.02	11.62	7.07	1.87
Merged-chr15-59265777-3	chr15	59265299	59266299	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41149.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	6.29	7.83	5.55	12.14	3.27	6.43	6.34	9.73	3.12
Merged-chr7-120873099-2	chr7	120872594	120873594	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	21905.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	26.89	16.13	23.12	12.82	7.0	8.04	8.45	7.96	7.49
Merged-chr11-119917284-1	chr11	119916784	119917784	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085498, intron 6 of 7)	intron (NM_001085498, intron 6 of 7)	3474.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	17.16	10.14	17.57	66.12	65.31	23.31	22.18	27.86	8.12
Merged-chr6-108695504-1	chr6	108695004	108696004	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34570.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	11.44	6.91	2.77	12.14	8.4	4.02	12.67	9.73	10.62
Merged-chr3-19219557-1	chr3	19219057	19220057	+	869.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045575, exon 9 of 9)	non-coding (NR_045575, exon 9 of 9)	31262.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	15.45	9.68	14.8	12.82	15.86	12.06	28.52	30.51	24.98
Merged-chr2-167333627-1	chr2	167333127	167334127	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	15551.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	21.74	15.67	6.47	31.71	26.12	39.39	55.98	42.45	13.12
Merged-chr4-32160564-1	chr4	32160064	32161064	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196457.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	20.59	23.96	42.55	35.76	30.79	60.28	63.37	36.26	36.22
Merged-chr4-66822681-3	chr4	66822194	66823194	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4857.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	38.33	36.86	19.42	24.96	26.59	24.92	13.73	14.59	9.99
Merged-chr19-32200258-2	chr19	32199741	32200741	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	10772.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.58	6.45	3.7	9.45	7.0	12.86	3.17	1.33	7.49
Merged-chr5-4583258-1	chr5	4582758	4583758	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174958.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.58	0.46	5.55	0.67	5.13	4.82	4.22	0.88	3.75
Merged-chr11-87427509-1	chr11	87427009	87428009	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001199293)	promoter-TSS (NM_001199293)	-82.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	61.21	78.33	49.02	51.28	39.19	44.21	36.97	48.2	30.6
Merged-chr15-81210714-1	chr15	81210214	81211214	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19861.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	12.01	4.15	1.85	8.1	6.53	5.63	2.11	3.54	3.12
Merged-chr1-136249927-1	chr1	136249427	136250427	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10946.0	NM_001101516	383563.0	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	4.58	1.38	3.7	6.07	2.8	2.41	4.22	0.0	0.0
Merged-chr11-103967352-3	chr11	103966852	103967852	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007477, exon 1 of 5)	5' UTR (NM_007477, exon 1 of 5)	481.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	292.32	288.45	260.84	333.99	271.51	225.86	224.97	274.14	234.82
Merged-chr1-170576574-2	chr1	170576068	170577068	+	869.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	intron (NM_001109985, intron 1 of 9)	13281.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	5.15	3.23	1.85	31.71	14.46	4.82	13.73	17.24	8.74
Merged-chr11-32271357-1	chr11	32270857	32271857	+	869.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-3650.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	8.01	4.61	7.4	7.42	0.47	6.43	2.11	1.33	1.25
Merged-chr4-137836003-4	chr4	137835457	137836457	+	868.994019	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26280.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	22.31	21.2	14.8	13.49	10.73	15.27	26.4	14.15	13.74
Merged-chr4-102720180-3	chr4	102719690	102720690	+	868.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-39945.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.0	5.53	10.17	15.52	6.06	0.0	6.34	3.1	7.49
Merged-chr3-86920724-5	chr3	86920193	86921193	+	868.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001195499, exon 1 of 18)	5' UTR (NM_001195499, exon 1 of 18)	191.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	37.18	31.33	16.65	46.56	37.32	36.17	9.51	4.86	5.62
Merged-chr14-76279217-2	chr14	76278718	76279718	+	868.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27756.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	6.29	4.15	3.7	14.17	9.8	3.22	12.67	8.4	5.0
Merged-chr2-155755925-2	chr2	155755425	155756425	+	868.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011171)	TTS (NM_011171)	4708.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	9.72	6.91	3.7	2.02	3.27	6.43	10.56	11.5	6.87
Merged-chr2-34784267-3	chr2	34783765	34784765	+	868.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 6 of 7)	B3|SINE|B2	12175.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	12.59	3.69	5.55	6.07	0.93	3.22	11.62	3.1	1.25
Merged-chr7-79232258-3	chr7	79231769	79232769	+	868.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-40997.0	NM_018811	54608.0	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	4.58	3.23	11.1	6.07	4.67	1.61	3.17	3.1	1.25
Merged-chr13-3895758-3	chr13	3895248	3896248	+	868.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2167.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	6.86	5.07	9.25	14.84	9.8	8.04	9.51	3.98	6.25
Merged-chr11-98933355-3	chr11	98932841	98933841	+	868.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4355.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	8.58	3.23	1.85	4.72	2.8	1.61	3.17	2.21	2.5
Merged-chr7-67372278-2	chr7	67371768	67372768	+	868.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	CpG	590.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	211.09	246.06	212.74	201.07	186.14	184.07	251.37	203.4	179.86
Merged-chr17-50528141-1	chr17	50527641	50528641	+	868.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	18594.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	26.31	27.65	17.57	34.41	33.12	40.99	53.87	40.24	21.23
Merged-chr18-67464916-3	chr18	67464444	67465444	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144867)	promoter-TSS (NM_144867)	95.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	1.72	4.15	0.0	6.07	3.73	3.22	4.22	3.1	4.37
Merged-chr11-106392028-3	chr11	106391548	106392548	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9267.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	12.01	4.61	3.7	8.1	2.8	8.04	1.06	4.42	2.5
Merged-chr8-48016665-3	chr8	48016129	48017129	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26078.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.44	3.23	1.85	8.77	4.2	10.45	3.17	1.33	0.0
Merged-chr4-15234781-3	chr4	15234289	15235289	+	868.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-31031.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	21.17	31.33	37.0	38.46	33.59	33.76	8.45	7.52	8.74
Merged-chr1-37479248-3	chr1	37478724	37479724	+	868.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M4|LINE|L1	9381.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	50.91	55.29	14.8	35.76	18.66	16.88	25.35	21.22	12.49
Merged-chr2-139379398-3	chr2	139378898	139379898	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114515.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	18.88	25.34	37.0	14.84	11.66	7.23	29.57	21.67	20.61
Merged-chr10-45454321-3	chr10	45453825	45454825	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001031772, intron 2 of 4)	intron (NM_001031772, intron 2 of 4)	15876.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	5.72	4.15	0.0	12.82	2.33	6.43	2.11	8.4	5.0
Merged-chr4-134779517-3	chr4	134779024	134780024	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11520.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	16.59	5.53	5.55	14.84	7.46	11.25	6.34	6.63	6.25
Merged-chr2-45245693-3	chr2	45245186	45246186	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-128244.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	89.24	124.87	71.22	96.48	119.43	102.88	118.29	141.94	91.81
Merged-chr3-27766245-3	chr3	27765741	27766741	+	868.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55789.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	22.88	26.26	11.1	32.39	30.79	20.9	19.01	19.01	9.99
Merged-chr19-41974125-5	chr19	41973632	41974632	+	868.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028152, intron 1 of 30)	intron (NM_028152, intron 1 of 30)	7004.0	NM_028152	72199.0	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	160.18	102.75	79.55	173.4	132.95	86.01	203.84	218.87	58.71
Merged-chr9-13526403-4	chr9	13525863	13526863	+	868.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93626.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	86.95	59.9	61.97	49.25	32.19	45.82	15.84	34.93	16.24
Merged-chr6-108832413-3	chr6	108831907	108832907	+	868.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	3766.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	16.02	7.37	26.82	10.8	11.2	13.66	12.67	7.07	13.12
Merged-chr10-120977958-3	chr10	120977451	120978451	+	868.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081193, exon 1 of 13)	exon (NM_001081193, exon 1 of 13)	1379.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	30.32	15.21	15.72	26.99	13.53	15.27	15.84	18.13	7.49
Merged-chr14-70100842-3	chr14	70100327	70101327	+	868.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	734.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	139.01	161.27	157.24	115.38	112.43	152.72	192.23	191.46	139.27
Merged-chr16-91347623-3	chr16	91347088	91348088	+	868.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25195.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	61.21	64.51	49.95	65.45	67.64	61.89	64.43	68.09	24.36
Merged-chr9-46168947-2	chr9	46168457	46169457	+	868.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-59673.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	10.87	3.23	2.77	6.07	7.93	9.65	5.28	1.77	8.74
Merged-chr12-100170490-3	chr12	100169982	100170982	+	868.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-10829.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	20.59	19.81	23.12	22.27	17.73	29.74	28.52	27.41	16.24
Merged-chr7-24661772-3	chr7	24661265	24662265	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030681, intron 1 of 1)	intron (NR_030681, intron 1 of 1)	471.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	36.04	36.86	28.67	35.76	26.59	23.31	32.74	25.2	22.48
Merged-chr8-105332770-3	chr8	105332275	105333275	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 13 of 21)	intron (NM_177699, intron 13 of 21)	6411.0	NM_025486	66320.0	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	22.88	19.81	19.42	24.29	18.19	29.74	49.64	45.54	24.36
Merged-chr12-12265164-1	chr12	12264664	12265664	+	868.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	3025.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	56.63	71.88	42.55	56.68	55.51	50.64	91.89	75.61	40.59
Merged-chr3-136750133-1	chr3	136749633	136750633	+	868.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	80067.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.29	9.68	2.77	4.05	3.73	3.22	2.11	2.21	3.12
Merged-chr2-142764711-3	chr2	142764198	142765198	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	136766.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	47.48	38.71	38.85	41.16	55.51	25.72	23.24	29.18	27.48
Merged-chr14-45218074-3	chr14	45217586	45218586	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 2 of 20)	intron (NM_001310534, intron 2 of 20)	1339.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	26.31	31.33	24.05	21.59	27.06	27.33	33.8	30.07	31.23
Merged-chr5-5368952-3	chr5	5368440	5369440	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	11311.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	18.31	17.51	15.72	15.52	16.33	15.27	31.69	19.9	14.99
Merged-chr3-9946680-3	chr3	9946172	9947172	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65913.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	12.01	6.45	15.72	14.84	12.6	8.04	8.45	4.86	12.49
Merged-chr11-96967760-3	chr11	96967268	96968268	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	9920.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	196.21	246.06	149.84	295.53	260.78	223.45	292.56	423.15	177.99
Merged-chr4-12084172-3	chr4	12083687	12084687	+	868.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110955, intron 2 of 28)	RodERV21-int|LTR|ERV1	3770.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	72.08	103.68	80.47	62.75	41.99	53.05	71.82	76.05	71.82
Merged-chr4-148085359-2	chr4	148084885	148085885	+	868.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301281, intron 1 of 4)	intron (NM_001301281, intron 1 of 4)	2679.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	20.59	34.1	38.85	15.52	15.39	45.82	45.42	50.85	33.1
Merged-chr14-63121980-2	chr14	63121481	63122481	+	868.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-481.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	115.55	128.56	108.22	116.05	99.83	151.11	141.53	156.09	105.55
Merged-chr19-6895768-3	chr19	6895253	6896253	+	868.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-13945.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	49.77	49.76	39.77	56.68	52.25	66.71	59.15	58.81	61.83
Merged-chr3-149395279-3	chr3	149394780	149395780	+	868.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120543.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	8.01	17.05	9.25	15.52	17.73	4.82	15.84	11.94	13.74
Merged-chr13-64307552-3	chr13	64306991	64307991	+	868.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025370, intron 4 of 5)	MTE-int|LTR|ERVL-MaLR	5219.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	28.03	29.95	50.87	39.81	41.52	38.58	28.52	20.78	14.99
Merged-chr11-23987942-2	chr11	23987472	23988472	+	868.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90084.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	4.0	1.84	16.65	4.05	5.6	4.82	3.17	1.77	3.75
Merged-chr2-30657853-3	chr2	30657362	30658362	+	868.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_136917)	TTS (NR_136917)	20149.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	187.06	214.73	74.0	199.72	247.25	143.88	111.96	141.49	59.95
Merged-chr10-19596826-2	chr10	19596327	19597327	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010511, intron 1 of 6)	MTEb|LTR|ERVL-MaLR	4878.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	50.91	46.08	39.77	52.63	44.32	27.33	51.75	50.85	45.59
Merged-chr7-102032682-1	chr7	102032182	102033182	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029211, intron 4 of 8)	MTC|LTR|ERVL-MaLR	-14527.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	64.64	66.81	71.22	71.52	66.24	92.44	78.16	84.9	81.81
Merged-chr12-79983464-3	chr12	79982986	79983986	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47222.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	6.86	5.07	5.55	5.4	3.73	8.04	4.22	0.88	6.25
Merged-chr5-124526755-1	chr5	124526255	124527255	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	L2c|LINE|L2	4636.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	16.59	4.15	0.0	18.22	8.4	14.47	11.62	2.65	1.25
Merged-chr17-24780999-2	chr17	24780504	24781504	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23378.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	21.17	21.66	27.75	24.96	13.06	31.35	1.06	0.88	1.87
Merged-chr16-78232402-2	chr16	78231898	78232898	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23056.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	1.14	3.69	0.0	12.14	12.13	11.25	12.67	9.73	2.5
Merged-chr10-89584860-1	chr10	89584360	89585360	+	868.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310710, intron 7 of 9)	intron (NM_001310710, intron 7 of 9)	14955.0	NM_001310710	216227.0	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	1.72	0.92	10.17	4.05	0.47	3.22	3.17	1.33	6.25
Merged-chr5-112995736-3	chr5	112995236	112996236	+	868.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	19802.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	21.17	35.48	30.52	25.64	36.39	39.39	36.97	37.58	28.73
Merged-chr17-64398869-1	chr17	64398369	64399369	+	868.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41937.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	4.0	1.38	5.55	7.42	5.13	1.61	6.34	0.88	3.12
Merged-chr4-116076573-4	chr4	116076106	116077106	+	868.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153521, intron 1 of 9)	CpG	1337.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	135.0	206.43	189.62	165.98	199.67	141.47	166.88	169.79	151.14
Merged-chr6-145193628-3	chr6	145193124	145194124	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177222, intron 7 of 15)	intron (NM_177222, intron 7 of 15)	17346.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	13.16	15.21	9.25	8.77	14.93	18.49	9.51	6.63	9.37
Merged-chr5-107763840-3	chr5	107763338	107764338	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 17 of 17)	intron (NM_007964, intron 17 of 17)	-38033.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	16.59	14.75	11.1	10.12	11.2	4.82	20.07	11.5	12.49
Merged-chr18-74773402-3	chr18	74772891	74773891	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	5064.0	NR_028560	100217466.0		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	5.15	11.98	19.42	14.84	24.72	30.54	21.12	22.55	19.98
Merged-chr2-13576042-3	chr2	13575552	13576552	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011701, intron 2 of 8)	intron (NM_011701, intron 2 of 8)	1741.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	19.45	30.41	12.02	27.66	22.86	15.27	20.07	15.48	19.98
Merged-chr2-72848612-3	chr2	72848107	72849107	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34890.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	19.45	11.06	9.25	14.84	21.46	9.65	29.57	28.74	14.99
Merged-chr6-124847466-3	chr6	124846962	124847962	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013534, intron 9 of 14)	intron (NM_013534, intron 9 of 14)	-7187.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	6.29	3.69	7.4	4.05	2.8	1.61	1.06	3.54	7.49
Merged-chr4-130284054-3	chr4	130283542	130284542	+	868.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-8456.0	NM_172702	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	3.43	4.15	6.47	2.7	1.4	0.0	4.22	3.54	6.25
Merged-chr10-83922795-2	chr10	83922293	83923293	+	868.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177904.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	44.05	31.33	29.6	53.3	39.65	21.7	85.55	91.97	38.1
Merged-chr5-105294024-4	chr5	105293498	105294498	+	868.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194336)	promoter-TSS (NM_194336)	-299.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	105.26	69.58	71.22	68.82	44.78	49.83	121.46	71.63	41.84
Merged-chr11-108079636-3	chr11	108079130	108080130	+	868.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	82782.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.43	2.3	5.55	6.07	0.93	2.41	4.22	2.21	2.5
Merged-chr3-101806353-3	chr3	101805853	101806853	+	868.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29870.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	7.44	1.84	0.0	5.4	0.0	1.61	1.06	0.0	1.25
Merged-chr11-40694454-3	chr11	40693955	40694955	+	868.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	748.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	97.82	151.6	107.29	121.45	159.08	122.18	160.54	210.91	111.17
Merged-chr14-49065571-3	chr14	49065080	49066080	+	868.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-969.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	137.86	149.29	110.99	128.2	139.49	114.14	123.57	100.37	83.06
Merged-chr8-3926815-2	chr8	3926305	3927305	+	868.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026972)	promoter-TSS (NM_026972)	36.0	NM_001037800	69165.0	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	3.43	2.3	1.85	4.05	1.87	3.22	3.17	2.65	7.49
Merged-chr11-63078187-2	chr11	63077691	63078691	+	868.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027660, intron 4 of 7)	intron (NM_027660, intron 4 of 7)	16532.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	4.0	6.45	3.7	6.75	5.6	8.84	5.28	8.84	5.0
Merged-chr5-103725941-3	chr5	103725418	103726418	+	868.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28244.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	36.61	42.39	33.3	17.54	11.66	8.84	46.47	50.41	28.73
Merged-chr5-66363453-2	chr5	66362954	66363954	+	868.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-25789.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.86	11.52	3.7	13.49	12.13	15.27	12.67	10.61	2.5
Merged-chr12-32724653-3	chr12	32724147	32725147	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95688.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	5.15	3.23	12.95	8.77	6.53	2.41	7.39	3.1	2.5
Merged-chr3-132176979-1	chr3	132176479	132177479	+	868.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 3 of 3)	intron (NM_020265, intron 3 of 3)	91687.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.86	1.38	7.4	2.02	2.33	2.41	5.28	3.98	2.5
Merged-chr8-72135786-3	chr8	72135303	72136303	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	CpG	511.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	48.05	58.52	66.6	89.06	90.5	92.44	46.47	29.18	29.98
Merged-chr4-86427548-3	chr4	86427056	86428056	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029967, exon 28 of 28)	3' UTR (NM_029967, exon 28 of 28)	130747.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	24.6	25.34	35.15	23.62	25.66	27.33	17.96	16.36	34.35
Merged-chr4-55925108-1	chr4	55924608	55925608	+	868.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-392633.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.72	0.92	3.7	6.07	3.27	0.8	2.11	3.54	6.25
Merged-chr19-56256964-3	chr19	56256450	56257450	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30962.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	4.0	4.61	5.55	6.07	2.8	1.61	3.17	2.21	0.0
Merged-chr11-59191114-3	chr11	59190607	59191607	+	868.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008193, intron 1 of 7)	intron (NM_008193, intron 1 of 7)	845.0	NM_008193	14923.0	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	66.36	60.36	52.72	61.4	55.51	67.52	71.82	87.55	52.46
Merged-chr9-41122902-3	chr9	41122397	41123397	+	868.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	MIR3|SINE|MIR	35165.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	61.21	47.0	37.92	43.18	48.98	49.03	41.19	40.24	25.61
Merged-chr6-127151054-3	chr6	127150553	127151553	+	868.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009829)	promoter-TSS (NM_009829)	-5.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	39.47	45.62	14.8	12.14	2.8	4.82	7.39	1.33	1.25
Merged-chr7-19270784-3	chr7	19270343	19271343	+	868.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	1011.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	129.86	152.98	173.89	62.07	66.71	102.08	99.28	129.55	166.75
Merged-chr3-97971343-1	chr3	97970843	97971843	+	868.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41170.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	2.86	2.76	5.55	2.7	3.27	6.43	7.39	6.63	0.0
Merged-chr3-108061556-3	chr3	108061064	108062064	+	868.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16705.0	NM_001160411	14865.0	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	12.01	15.67	11.1	14.84	19.13	4.02	17.96	11.94	3.75
Merged-chr15-8433586-2	chr15	8433175	8434175	+	868.2333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	10788.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	33.75	22.12	32.37	29.69	27.99	43.4	47.53	31.39	55.58
Merged-chr3-88488542-3	chr3	88488034	88489034	+	868.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	4778.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	6.29	4.61	1.85	8.1	1.4	0.0	4.22	2.21	6.87
Merged-chr4-114970937-3	chr4	114970437	114971437	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	16291.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	16.59	36.86	32.37	21.59	23.33	36.97	24.29	23.43	38.1
Merged-chr17-46298744-3	chr17	46298248	46299248	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286013, intron 2 of 5)	intron (NM_001286013, intron 2 of 5)	820.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	6.86	1.38	1.85	2.7	2.8	2.41	4.22	1.77	0.0
Merged-chrX-142737958-3	chrX	142737447	142738447	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-1053.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	12.01	6.91	13.87	10.8	6.06	17.68	9.51	2.21	4.37
Merged-chr9-42306534-3	chr9	42306043	42307043	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42243.0	NM_172769	235293.0	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	1.72	5.53	3.7	5.4	6.06	9.65	8.45	5.31	6.25
Merged-chr8-103941082-3	chr8	103940579	103941579	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160546.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	18.31	21.66	13.87	39.81	42.92	53.05	31.69	45.54	20.61
Merged-chr12-40220448-3	chr12	40219967	40220967	+	868.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	RSINE1|SINE|B4	2344.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	42.33	52.07	32.37	55.33	40.12	48.23	51.75	55.27	34.97
Merged-chr6-5589829-3	chr6	5589321	5590321	+	868.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93543.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	5.15	1.38	0.0	2.02	0.47	6.43	1.06	1.77	5.0
Merged-chr7-29853614-3	chr7	29853096	29854096	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173738)	promoter-TSS (NM_173738)	52.0	NM_173738	233057.0	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	12.59	10.6	11.1	18.22	20.06	20.09	19.01	11.5	8.74
Merged-chr14-20479945-3	chr14	20479433	20480433	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009674, exon 1 of 13)	5' UTR (NM_009674, exon 1 of 13)	200.0	NM_001110794	11750.0	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	56.63	53.45	41.62	43.86	60.65	68.32	33.8	37.58	26.85
Merged-chr6-97445359-3	chr6	97444869	97445869	+	868.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	13917.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	45.76	53.91	87.87	60.72	57.85	61.89	77.1	58.81	53.71
Merged-chr3-51358254-3	chr3	51357734	51358734	+	868.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17590.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	12.01	2.76	2.77	4.72	2.8	3.22	8.45	6.19	6.25
Merged-chr2-167887946-3	chr2	167887416	167888416	+	868.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44411.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	29.75	29.03	37.92	48.58	28.92	64.3	52.81	55.71	34.35
Merged-chr17-66076349-2	chr17	66075877	66076877	+	868.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025572, intron 1 of 12)	CpG	669.0	NM_001025572	106585.0	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	86.38	70.5	49.02	112.0	85.37	61.89	98.23	62.35	41.84
Merged-chr5-3341586-6	chr5	3341056	3342056	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2337.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	82.38	55.75	29.6	98.51	94.7	72.34	50.7	47.75	35.6
Merged-chr16-10979645-3	chr16	10979101	10980101	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	MLT-int|LTR|ERVL-MaLR	13520.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	45.76	49.76	36.07	65.45	36.39	73.95	51.75	55.27	32.48
Merged-chr12-105684064-3	chr12	105683563	105684563	+	868.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029654, intron 1 of 41)	intron (NM_029654, intron 1 of 41)	1178.0	NM_029654	76559.0	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	70.36	41.01	23.12	92.44	53.18	38.58	69.71	53.06	17.49
Merged-chr11-117175128-2	chr11	117174627	117175627	+	868.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24534.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	21.17	13.82	17.57	89.06	73.24	54.66	64.43	73.84	41.22
Merged-chr7-75609674-2	chr7	75609179	75610179	+	868.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029332, exon 7 of 37)	exon (NM_029332, exon 7 of 37)	154145.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	76.66	57.14	26.82	63.42	46.18	61.09	5.28	2.65	3.75
Merged-chr17-34879704-3	chr17	34879199	34880199	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013484, intron 3 of 17)	intron (NM_013484, intron 3 of 17)	2401.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	23.45	27.19	35.15	35.76	18.19	20.9	46.47	34.05	17.49
Merged-chr7-73422622-3	chr7	73422119	73423119	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46845.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	2.29	1.38	1.85	2.7	3.73	3.22	3.17	0.44	1.25
Merged-chr6-49267114-3	chr6	49266614	49267614	+	868.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3062.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	10.3	9.68	3.7	6.07	4.2	12.06	2.11	1.77	4.37
Merged-chrX-74014808-3	chrX	74014311	74015311	+	868.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008363, exon 14 of 14)	3' UTR (NM_008363, exon 14 of 14)	8787.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	8.58	18.43	14.8	13.49	16.79	17.68	9.51	21.22	13.12
Merged-chr7-45700892-3	chr7	45700378	45701378	+	868.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009800, intron 2 of 8)	intron (NM_009800, intron 2 of 8)	911.0	NM_009800	12348.0	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	4.0	7.83	0.92	6.75	5.13	3.22	6.34	2.21	6.25
Merged-chr13-113035105-3	chr13	113034611	113035611	+	868.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281487)	promoter-TSS (NM_001281487)	-268.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	7.44	5.07	1.85	7.42	2.8	2.41	4.22	2.65	1.87
Merged-chr15-100406280-1	chr15	100405780	100406780	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146161, exon 6 of 16)	exon (NM_001146161, exon 6 of 16)	16775.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	36.04	42.39	52.72	78.27	80.24	105.3	52.81	46.87	43.09
Merged-chr2-180041784-2	chr2	180041290	180042290	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178750)	promoter-TSS (NM_178750)	674.0	NM_001289476	26444.0	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	284.31	361.72	307.08	292.15	360.14	268.47	284.11	311.73	219.21
Merged-chr13-97567835-3	chr13	97567308	97568308	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	7808.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	18.88	31.33	8.32	25.64	29.86	30.54	23.24	26.09	20.61
Merged-chr18-42009875-1	chr18	42009375	42010375	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-10826.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	4.58	2.3	0.92	6.07	0.47	0.0	2.11	0.88	2.5
Merged-chrX-119927163-1	chrX	119926663	119927663	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053114)	promoter-TSS (NM_053114)	-33.0	NM_053114	93728.0	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.57	1.38	0.0	2.7	3.73	0.0	0.0	1.33	3.75
Merged-chr2-150787445-2	chr2	150786941	150787941	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153781, intron 1 of 19)	intron (NM_153781, intron 1 of 19)	645.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	45.19	28.57	40.7	41.16	31.26	63.5	42.25	30.07	35.6
Merged-chrX-169993710-1	chrX	169993210	169994210	+	868.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14793.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	47.48	14.75	4.62	3.37	0.0	0.0	13.73	7.07	17.49
Merged-chr17-10740341-3	chr17	10739833	10740833	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	99858.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.15	4.15	2.77	7.42	10.26	8.84	9.51	7.96	7.49
Merged-chr10-68434204-1	chr10	68433704	68434704	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 7 of 7)	intron (NM_028491, intron 7 of 7)	107671.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	4.0	2.3	7.4	0.67	4.67	3.22	2.11	2.65	6.25
Merged-chr12-118759732-1	chr12	118759232	118760232	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Plat_L3|LINE|CR1	-86597.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	5.15	0.92	1.85	1.35	2.33	5.63	1.06	1.77	1.25
Merged-chr3-129612795-3	chr3	129612295	129613295	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 3 of 4)	intron (NM_130450, intron 3 of 4)	-80407.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	4.0	3.69	3.7	13.49	12.6	8.84	1.06	6.19	2.5
Merged-chr7-43604687-2	chr7	43604170	43605170	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-2499.0	NM_001355131	74400.0	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	4.58	4.61	1.85	5.4	3.27	8.04	4.22	2.65	4.37
Merged-chr5-100466773-1	chr5	100466273	100467273	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001115010, intron 4 of 12)	intron (NM_001115010, intron 4 of 12)	31800.0	NM_001115010	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	4.58	2.76	4.62	4.05	2.33	6.43	4.22	6.63	2.5
Merged-chr7-88319656-3	chr7	88319166	88320166	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41581.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	26.89	29.95	38.85	21.59	20.53	37.78	21.12	39.8	24.36
Merged-chr13-80935352-1	chr13	80934852	80935852	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5051.0	NR_103550	71416.0	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	5.72	4.61	8.32	9.45	4.2	14.47	19.01	6.19	6.25
Merged-chr10-117373277-1	chr10	117372777	117373777	+	868.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	B2_Mm2|SINE|B2	3696.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	20.02	24.42	17.57	14.84	14.0	30.54	15.84	25.2	24.98
Merged-chr2-84355468-1	chr2	84354968	84355968	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018782, intron 9 of 15)	MTB_Mm|LTR|ERVL-MaLR	69798.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	10.3	8.29	3.7	16.19	11.66	14.47	7.39	6.19	13.74
Merged-chr19-34206700-1	chr19	34206200	34207200	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-10808.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	40.62	21.66	25.9	32.39	26.59	17.68	38.02	22.55	26.85
Merged-chr19-4865282-1	chr19	4864782	4865782	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013456, intron 12 of 20)	intron (NM_013456, intron 12 of 20)	10153.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	5.72	4.15	12.95	6.75	4.2	9.65	4.22	3.1	3.75
Merged-chr6-135333904-1	chr6	135333404	135334404	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23520.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	2.29	2.3	0.0	3.37	1.87	8.04	5.28	1.77	5.0
Merged-chr13-8645881-1	chr13	8645381	8646381	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225163.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	10.3	10.6	9.25	49.25	45.72	52.25	17.96	12.82	16.24
Merged-chr8-47691807-1	chr8	47691307	47692307	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-16648.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	9.15	14.75	19.42	16.87	24.72	17.68	16.9	15.03	16.24
Merged-chr8-46828944-1	chr8	46828444	46829444	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	89199.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	14.87	27.65	22.2	19.57	16.33	43.4	34.85	26.97	16.24
Merged-chr15-39907267-1	chr15	39906767	39907767	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172814, intron 1 of 6)	intron (NM_172814, intron 1 of 6)	36727.0	NM_001347036	239393.0	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	3.43	2.76	0.0	4.05	4.67	6.43	5.28	0.88	3.12
Merged-chr7-31168580-1	chr7	31168080	31169080	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046062, intron 3 of 3)	intron (NR_046062, intron 3 of 3)	6222.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	7.44	0.46	4.62	4.72	11.2	8.04	2.11	0.0	1.25
Merged-chr12-26366152-1	chr12	26365652	26366652	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130981, intron 3 of 4)	intron (NR_130981, intron 3 of 4)	19442.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	3.43	2.3	1.85	6.75	5.13	7.23	4.22	5.31	1.25
Merged-chr2-148454313-1	chr2	148453813	148454813	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10778.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.15	4.15	3.7	2.7	5.6	11.25	4.22	1.33	1.25
Merged-chr3-95667198-1	chr3	95666698	95667698	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	8477.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	102.4	110.13	91.57	120.77	89.1	99.67	115.12	139.72	80.56
Merged-chr15-53216574-1	chr15	53216074	53217074	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	129609.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.0	5.99	5.55	14.17	5.13	15.27	6.34	5.31	3.75
Merged-chr2-168005829-1	chr2	168005329	168006329	+	868.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080708, intron 2 of 21)	MIR3|SINE|MIR	4764.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	8.01	5.07	1.85	3.37	1.87	10.45	2.11	0.0	5.0
Merged-chr17-21579695-2	chr17	21579205	21580205	+	867.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357347, intron 4 of 6)	intron (NM_001357347, intron 4 of 6)	12727.0	NM_001357347	381066.0	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	5.15	2.3	0.0	5.4	0.47	3.22	4.22	1.33	2.5
Merged-chr14-31434019-2	chr14	31433510	31434510	+	867.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2090.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	66.93	95.84	53.65	80.29	77.91	99.67	126.74	109.66	81.81
Merged-chr13-24323584-3	chr13	24323078	24324078	+	867.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3826.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	16.02	16.59	16.65	29.01	14.0	26.53	28.52	15.48	21.86
Merged-chr11-32342946-3	chr11	32342444	32343444	+	867.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4867.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	2.86	3.23	1.85	2.02	0.47	3.22	2.11	1.77	2.5
Merged-chr2-32881942-2	chr2	32881438	32882438	+	867.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	5804.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	13.16	14.28	11.1	51.28	28.46	43.4	15.84	17.24	8.74
Merged-chr10-81191526-3	chr10	81191048	81192048	+	867.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 6 of 8)	MTC|LTR|ERVL-MaLR	-3143.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	43.48	35.48	42.55	53.3	40.12	57.87	54.92	43.33	46.84
Merged-chr13-9457189-3	chr13	9456675	9457675	+	867.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	ORR1F|LTR|ERVL-MaLR	180650.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	36.04	39.63	29.6	23.62	27.99	43.4	52.81	44.66	16.24
Merged-chr3-144137696-2	chr3	144137212	144138212	+	867.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64620.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.0	5.53	4.62	1.35	2.33	0.8	5.28	3.98	1.87
Merged-chr4-150625561-3	chr4	150625060	150626060	+	867.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26614.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	9.15	3.69	1.85	4.05	1.87	3.22	5.28	4.86	5.0
Merged-chr2-58923295-3	chr2	58922796	58923796	+	867.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	RMER19C|LTR|ERVK	168112.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	79.52	87.09	25.9	80.29	86.3	40.99	69.71	77.82	38.72
Merged-chr4-126440798-2	chr4	126440283	126441283	+	867.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153403, intron 16 of 18)	MIRb|SINE|MIR	-11241.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	15.45	8.29	11.1	23.62	19.59	19.29	21.12	22.11	26.85
Merged-chr9-22478347-1	chr9	22477847	22478847	+	867.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178415, intron 2 of 22)	intron (NM_178415, intron 2 of 22)	2632.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	5.72	7.83	1.85	11.47	11.66	7.23	12.67	12.82	5.62
Merged-chr16-24603559-3	chr16	24603054	24604054	+	867.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	74240.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	30.32	28.11	18.5	26.31	23.33	25.72	41.19	19.9	11.24
Merged-chr1-79602055-1	chr1	79601555	79602555	+	867.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	69917.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	15.45	19.81	17.57	11.47	5.13	7.23	3.17	4.86	1.25
Merged-chr6-125418959-3	chr6	125418462	125419462	+	867.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38458.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.58	2.76	1.85	3.37	0.0	2.41	3.17	0.88	0.0
Merged-chr11-34427391-3	chr11	34426882	34427882	+	867.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 27 of 51)	intron (NM_033374, intron 27 of 51)	112560.0	NM_001025382	574403.0	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	44.05	34.1	16.65	59.38	45.72	37.78	57.03	59.25	24.36
Merged-chr9-7176997-3	chr9	7176473	7177473	+	867.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029851)	promoter-TSS (NM_029851)	73.0	NM_029851	110350.0	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	9.72	3.23	4.62	4.72	5.6	9.65	6.34	4.86	0.0
Merged-chr3-142295063-2	chr3	142294556	142295556	+	867.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96794.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.0	4.15	3.7	4.72	6.06	8.84	9.51	6.19	14.99
Merged-chr11-94413230-3	chr11	94412723	94413723	+	867.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009783, intron 33 of 35)	intron (NM_009783, intron 33 of 35)	-20247.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	10.3	3.23	0.0	8.1	6.06	5.63	5.28	2.65	2.5
Merged-chr15-5872263-3	chr15	5871772	5872772	+	867.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	172432.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	40.62	44.7	39.77	34.41	33.59	56.27	52.81	36.7	26.85
Merged-chr16-33755537-3	chr16	33755038	33756038	+	867.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 12 of 14)	intron (NM_175256, intron 12 of 14)	-38499.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	147.59	124.87	65.67	172.05	194.07	126.19	191.17	233.46	93.68
Merged-chr9-58280689-3	chr9	58280176	58281176	+	867.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	27512.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	16.59	8.75	1.85	8.77	4.2	3.22	5.28	3.54	3.12
Merged-chr9-90257553-3	chr9	90257011	90258011	+	867.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	13258.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	114.41	145.15	95.27	164.63	104.5	113.33	188.0	182.17	76.82
Merged-chr5-3300920-3	chr5	3300425	3301425	+	867.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42968.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	15.45	12.44	1.85	45.21	43.85	40.99	19.01	8.84	8.74
Merged-chr10-77664275-1	chr10	77663775	77664775	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22294.0	NM_001287074	252974.0	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	8.58	0.92	0.0	17.54	4.2	4.82	4.22	2.21	12.49
Merged-chr10-62190942-1	chr10	62190442	62191442	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197996, intron 5 of 7)	intron (NM_197996, intron 5 of 7)	3285.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	26.31	15.21	16.65	16.87	12.6	24.11	21.12	11.94	4.37
Merged-chr14-120479623-3	chr14	120479104	120480104	+	867.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	1143.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	24.03	25.34	24.05	62.07	47.12	36.17	30.63	22.11	31.23
Merged-chr3-149110308-1	chr3	149109808	149110808	+	867.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-155673.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.29	4.15	3.7	4.72	2.8	3.22	2.11	3.98	3.75
Merged-chr7-45098987-2	chr7	45098491	45099491	+	867.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357117, intron 4 of 6)	B3|SINE|B2	4831.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	58.92	51.61	36.07	63.42	47.12	81.18	6.34	13.71	9.37
Merged-chr3-89160213-3	chr3	89159725	89160725	+	867.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008227)	promoter-TSS (NM_008227)	-68.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	7.44	1.38	5.55	6.07	0.47	1.61	6.34	0.0	0.0
Merged-chr11-62539194-3	chr11	62538721	62539721	+	867.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028448)	promoter-TSS (NM_028448)	40.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	106.4	74.19	62.9	109.98	62.98	83.59	104.56	57.92	41.84
Merged-chr16-4464894-3	chr16	4464366	4465366	+	867.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44368.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	30.89	23.5	21.27	19.57	17.73	17.68	30.63	15.03	22.48
Merged-chr16-57483001-3	chr16	57482518	57483518	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66224.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	25.74	18.89	4.62	39.81	18.66	21.7	22.18	15.03	7.49
Merged-chr17-27910865-3	chr17	27910386	27911386	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	B4A|SINE|B4	1580.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	374.7	383.37	278.41	275.96	213.66	204.97	276.72	409.0	210.47
Merged-chr1-165701055-3	chr1	165700554	165701554	+	867.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7040.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	45.19	30.87	46.25	47.9	27.06	41.8	50.7	38.47	29.98
Merged-chr5-62677549-2	chr5	62677041	62678041	+	867.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 12 of 32)	intron (NM_178407, intron 12 of 32)	88636.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	4.58	9.68	10.17	12.14	7.0	16.88	11.62	6.19	5.62
Merged-chr16-9132316-3	chr16	9131820	9132820	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	302220.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	6.86	5.53	5.55	7.42	9.8	15.27	4.22	4.86	9.99
Merged-chr2-167786091-3	chr2	167785602	167786602	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94925.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	12.59	7.83	1.85	20.92	6.53	7.23	14.79	14.15	7.49
Merged-chr12-35303344-3	chr12	35302855	35303855	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108458.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.58	11.52	13.87	7.42	5.6	4.82	14.79	6.63	13.12
Merged-chr13-34792787-3	chr13	34792286	34793286	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53144.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	119.56	99.07	68.45	109.3	121.29	59.48	68.65	82.69	19.98
Merged-chr5-102060471-3	chr5	102059980	102060980	+	867.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	9441.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	62.35	61.28	43.47	70.17	55.05	53.85	121.46	116.73	51.21
Merged-chr10-119050159-3	chr10	119049639	119050639	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152787, exon 2 of 4)	non-coding (NR_152787, exon 2 of 4)	360.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	14.87	8.75	1.85	33.74	24.26	18.49	22.18	13.71	20.61
Merged-chr10-20776888-2	chr10	20776386	20777386	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51808.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	20.02	13.82	11.1	20.24	11.66	13.66	30.63	16.8	15.61
Merged-chr11-120349253-4	chr11	120348800	120349800	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313923)	promoter-TSS (NM_001313923)	622.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	507.98	454.79	462.48	436.54	397.0	346.43	414.02	503.63	293.53
Merged-chr17-13441211-1	chr17	13440711	13441711	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-80245.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	4.0	1.84	0.0	14.17	20.99	14.47	2.11	6.19	2.5
Merged-chr3-32421288-2	chr3	32420791	32421791	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14860.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	13.16	11.98	7.4	10.12	8.86	9.65	10.56	9.73	7.49
Merged-chr8-16429954-2	chr8	16429449	16430449	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053171, intron 7 of 69)	intron (NM_053171, intron 7 of 69)	-261111.0	NR_037214	100526464.0		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	3.43	9.68	18.5	6.07	2.8	7.23	4.22	10.17	6.25
Merged-chr3-87401472-2	chr3	87400998	87401998	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310545, intron 10 of 10)	intron (NM_001310545, intron 10 of 10)	25111.0	NM_178165	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	13.16	12.9	12.02	14.84	14.93	10.45	140.47	173.77	82.44
Merged-chr3-52501899-3	chr3	52501387	52502387	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15077.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	18.88	11.98	11.1	18.22	7.0	4.02	8.45	7.96	6.87
Merged-chr13-37678136-3	chr13	37677636	37678636	+	867.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147902.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	76.08	46.54	35.15	72.19	64.84	54.66	71.82	58.37	43.72
Merged-chr7-6194314-1	chr7	6193814	6194814	+	867.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2776.0	NM_178028	232836.0	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	4.58	2.76	5.55	4.05	4.67	1.61	1.06	2.65	1.25
Merged-chr14-26971683-3	chr14	26971188	26972188	+	867.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1137.0	NM_145221	72993.0	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	14.3	15.21	12.02	14.84	18.19	29.74	19.01	19.01	11.24
Merged-chr6-129462198-3	chr6	129461703	129462703	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_132130, exon 6 of 6)	non-coding (NR_132130, exon 6 of 6)	-10203.0	NM_175526	243653.0	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	21.74	20.74	13.87	22.27	14.93	44.21	30.63	28.74	18.74
Merged-chr12-80769830-3	chr12	80769344	80770344	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9129.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	5.72	2.3	1.85	4.05	5.13	5.63	9.51	4.86	3.12
Merged-chr1-86038353-3	chr1	86037840	86038840	+	867.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7523.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	14.3	7.37	12.95	17.54	20.06	16.08	20.07	26.53	15.61
Merged-chr3-81052518-3	chr3	81052035	81053035	+	867.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	16119.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	201.36	223.94	131.34	243.57	221.13	166.38	190.11	242.75	129.9
Merged-chr17-28951872-3	chr17	28951377	28952377	+	867.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356299)	promoter-TSS (NM_001356299)	-559.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	120.13	112.43	92.5	134.27	103.1	102.08	137.3	129.55	59.95
Merged-chr2-12350574-2	chr2	12350085	12351085	+	867.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149732, intron 14 of 15)	intron (NR_149732, intron 14 of 15)	-48641.0	NM_001001309	241226.0	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	5.15	8.75	3.7	11.47	10.73	7.23	7.39	12.38	2.5
Merged-chr6-137560439-2	chr6	137559942	137560942	+	867.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	10567.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	46.34	42.39	38.85	36.43	18.66	21.7	10.56	20.78	6.87
Merged-chr11-101581437-5	chr11	101580916	101581916	+	867.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144830)	promoter-TSS (NM_144830)	-826.0	NM_001359326	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	84.66	78.33	70.3	106.61	53.18	75.56	76.05	85.78	61.2
Merged-chr17-5402215-3	chr17	5401704	5402704	+	867.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16563.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.0	5.07	1.85	5.4	2.33	4.82	4.22	0.44	5.0
Merged-chr12-83999484-3	chr12	83998988	83999988	+	867.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10014.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	37.18	12.9	7.4	42.51	22.39	8.84	20.07	13.27	5.0
Merged-chr13-51964430-2	chr13	51963875	51964875	+	867.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117700.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	8.01	9.22	7.4	31.04	8.86	8.84	13.73	17.69	13.74
Merged-chr10-99270017-2	chr10	99269503	99270503	+	867.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6772.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	22.88	19.81	22.2	33.06	9.8	36.97	24.29	14.15	10.62
Merged-chr8-69007212-3	chr8	69006711	69007711	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81525.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	81.23	92.62	77.7	100.53	46.65	69.13	167.93	127.79	79.32
Merged-chr13-95778967-3	chr13	95778482	95779482	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	82062.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	10.3	4.61	12.95	8.1	5.13	6.43	21.12	17.24	16.24
Merged-chr7-14533649-1	chr7	14533149	14534149	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045120, intron 12 of 12)	intron (NR_045120, intron 12 of 12)	28522.0	NM_001244031	627280.0	Mm.372763	NM_001039146	ENSMUSG00000100586	Vmn1r90	B430211C08Rik	vomeronasal 1 receptor 90	protein-coding	6.86	8.29	0.92	26.99	29.39	31.35	25.35	19.01	13.74
Merged-chr12-4189819-3	chr12	4189324	4190324	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44141.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	42.33	37.32	41.62	55.33	43.85	57.87	21.12	20.34	24.98
Merged-chr13-107027394-1	chr13	107026894	107027894	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015471, intron 2 of 3)	ORR1E|LTR|ERVL-MaLR	4824.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	3.43	4.15	0.0	4.72	3.73	3.22	3.17	1.33	9.99
Merged-chr7-102153843-1	chr7	102153343	102154343	+	867.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_022979, exon 16 of 23)	exon (NM_022979, exon 16 of 23)	-37130.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	5.15	5.99	1.85	8.77	8.86	8.84	5.28	7.07	8.74
Merged-chr7-132315635-3	chr7	132315127	132316127	+	867.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028578)	promoter-TSS (NR_028578)	-37.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	61.78	42.85	40.7	38.46	30.32	12.06	45.42	28.3	8.74
Merged-chr4-16071500-3	chr4	16071016	16072016	+	867.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-57628.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	17.16	15.21	16.65	5.4	5.13	16.88	22.18	34.49	12.49
Merged-chr11-62005664-3	chr11	62005120	62006120	+	867.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	48857.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	103.54	116.58	93.42	129.55	130.62	131.82	77.1	83.13	73.69
Merged-chr12-78894314-3	chr12	78893821	78894821	+	867.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013738, intron 5 of 8)	intron (NM_013738, intron 5 of 8)	12617.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	6.29	5.07	3.7	12.82	5.13	9.65	9.51	2.21	7.49
Merged-chr13-101906584-3	chr13	101906078	101907078	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138361.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	121.85	93.54	75.85	138.32	76.04	91.63	114.07	117.62	80.56
Merged-chr16-50589934-3	chr16	50589431	50590431	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040566)	promoter-TSS (NR_040566)	-572.0	NR_040566	75211.0	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	8.01	8.29	0.0	12.14	18.19	16.08	12.67	7.96	7.49
Merged-chr12-78219350-3	chr12	78218808	78219808	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7347.0	NM_172952	268566.0	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	46.91	68.2	20.35	51.95	64.84	30.54	94.0	87.55	29.98
Merged-chr2-118905598-3	chr2	118905112	118906112	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	3997.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	4.0	4.61	5.55	2.7	6.06	7.23	8.45	4.42	7.49
Merged-chr15-12371354-3	chr15	12370839	12371839	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081064, intron 20 of 23)	intron (NM_001081064, intron 20 of 23)	49843.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.72	0.92	7.4	3.37	4.2	3.22	6.34	1.77	9.99
Merged-chr8-90822563-3	chr8	90822056	90823056	+	867.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	22.31	25.34	7.4	13.49	11.66	12.86	19.01	22.55	26.23
Merged-chr10-8124294-1	chr10	8123794	8124794	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168171.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	2.29	6.45	13.87	12.82	11.66	23.31	5.28	10.61	7.49
Merged-chr7-62464486-3	chr7	62463994	62464994	+	867.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013788)	promoter-TSS (NM_013788)	16.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	8.58	4.61	5.55	35.09	17.73	31.35	4.22	1.77	0.0
Merged-chr17-88581703-2	chr17	88581236	88582236	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 19 of 21)	intron (NM_028658, intron 19 of 21)	-44819.0	NM_029858	77057.0	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	5.15	13.36	8.32	14.84	11.66	9.65	4.22	2.65	14.36
Merged-chr17-88349334-1	chr17	88348834	88349834	+	867.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91370.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.58	1.38	1.85	4.72	1.4	4.82	2.11	1.77	1.25
Merged-chr10-121370228-3	chr10	121369736	121370736	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	5146.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	16.59	14.28	13.87	18.89	21.93	27.33	28.52	22.11	21.23
Merged-chr7-45521525-3	chr7	45521008	45522008	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045555, intron 11 of 13)	B1_Mur4|SINE|Alu	4760.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	167.61	135.01	79.55	154.51	133.42	133.43	127.8	157.41	82.44
Merged-chr16-30686680-3	chr16	30686167	30687167	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86944.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.0	4.61	12.95	4.72	1.87	0.8	8.45	4.42	6.87
Merged-chr13-17982846-3	chr13	17982331	17983331	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10520.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	12.59	9.22	5.55	16.19	15.39	8.04	27.46	23.43	11.87
Merged-chr5-100574564-3	chr5	100574072	100575072	+	867.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2367.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	17.16	27.19	21.27	11.47	11.66	17.68	41.19	37.58	11.87
Merged-chrX-12839807-3	chrX	12839290	12840290	+	867.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	77512.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	44.62	49.76	24.05	49.25	39.65	32.15	23.24	42.01	13.74
Merged-chr11-110430024-3	chr11	110429528	110430528	+	867.175903	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	30926.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	119.56	90.31	48.1	74.22	42.45	38.58	153.15	141.94	61.83
Merged-chr19-57404317-3	chr19	57403833	57404833	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	5.15	2.76	1.85	2.7	4.67	3.22	3.17	0.88	1.25
Merged-chr7-114281858-3	chr7	114281350	114282350	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5734.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	2.86	4.61	0.0	2.7	2.8	3.22	4.22	1.33	3.75
Merged-chr9-118679046-3	chr9	118678543	118679543	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	MTD|LTR|ERVL-MaLR	-32649.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.43	9.22	2.77	19.57	7.93	15.27	16.9	22.55	24.98
Merged-chr16-33520062-3	chr16	33519565	33520565	+	867.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 1 of 11)	intron (NM_001083902, intron 1 of 11)	1470.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	10.87	7.83	3.7	18.89	10.73	5.63	4.22	3.54	5.0
Merged-chr4-132514066-3	chr4	132513545	132514545	+	867.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3589.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	80.66	61.28	41.62	77.59	63.91	61.89	81.33	102.14	37.47
Merged-chr1-167340406-2	chr1	167339990	167340990	+	867.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-9501.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	36.04	26.73	23.12	31.04	35.45	23.31	35.91	19.01	13.74
Merged-chr4-10920588-2	chr4	10920077	10921077	+	867.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46079.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	9.15	13.82	16.65	8.77	3.27	13.66	21.12	21.67	21.86
Merged-chr12-12176454-3	chr12	12175948	12176948	+	867.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85691.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	28.6	20.27	18.5	16.87	18.66	24.92	32.74	25.2	19.36
Merged-chr7-123025311-3	chr7	123024803	123025803	+	867.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54739.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	5.72	11.52	4.62	12.14	10.26	4.82	21.12	17.24	11.87
Merged-chr9-59959480-3	chr9	59958958	59959958	+	867.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101600)	TTS (NM_001101600)	8164.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	2.29	3.23	1.85	2.7	4.67	3.22	1.06	1.33	0.0
Merged-chr10-98897726-3	chr10	98897216	98898216	+	867.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16926.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	225.96	247.44	135.04	248.3	242.12	173.62	214.41	250.27	143.02
Merged-chr17-5747618-3	chr17	5747223	5748223	+	867.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50934.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	43.48	45.62	23.12	44.53	26.59	18.49	73.93	56.6	26.85
Merged-chr6-51523968-3	chr6	51523478	51524478	+	867.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127349)	promoter-TSS (NM_001127349)	75.0	NM_001127349	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	135.0	152.52	104.52	136.29	162.81	158.35	132.02	125.58	66.2
Merged-chr10-43672600-3	chr10	43672096	43673096	+	867.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73562.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	17.73	14.28	4.62	14.17	19.59	5.63	22.18	21.67	13.12
Merged-chr17-35023891-3	chr17	35023370	35024370	+	867.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347347, exon 13 of 17)	exon (NM_001347347, exon 13 of 17)	4146.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	9.72	9.22	13.87	17.54	13.06	16.08	17.96	7.07	13.12
Merged-chr13-41601859-3	chr13	41601309	41602309	+	867.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4407.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	149.31	158.97	101.74	143.71	81.17	127.8	173.21	191.02	114.91
Merged-chr8-88656189-3	chr8	88655702	88656702	+	867.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8855.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	8.58	13.36	7.4	4.05	5.6	12.06	7.39	6.19	3.75
Merged-chr13-37830912-1	chr13	37830412	37831412	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	3519.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	18.88	15.21	37.92	15.52	8.86	24.92	15.84	11.5	18.74
Merged-chr5-21367665-3	chr5	21367168	21368168	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-5005.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	45.19	41.47	26.82	22.27	17.73	25.72	68.65	66.33	33.72
Merged-chr1-156014076-2	chr1	156013575	156014575	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160018, intron 8 of 9)	intron (NM_001160018, intron 8 of 9)	20742.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	50.34	70.96	37.0	60.72	39.19	31.35	90.83	123.36	33.1
Merged-chr10-93311013-2	chr10	93310496	93311496	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013508, exon 1 of 5)	5' UTR (NM_013508, exon 1 of 5)	163.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	41.19	29.03	39.77	43.86	25.66	60.28	11.62	8.4	19.36
Merged-chr18-46544764-1	chr18	46544264	46545264	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18793.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	4.0	2.76	0.0	4.05	8.4	4.82	4.22	4.42	3.75
Merged-chr8-125531852-3	chr8	125531354	125532354	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	ORR1E|LTR|ERVL-MaLR	38009.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.72	8.75	12.02	6.07	7.46	8.04	8.45	7.07	5.0
Merged-chr6-134877049-1	chr6	134876549	134877549	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167694, intron 3 of 3)	intron (NM_001167694, intron 3 of 3)	10736.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	1.72	0.46	1.85	4.72	0.47	0.8	10.56	7.96	7.49
Merged-chr16-55848032-3	chr16	55847547	55848547	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 5 of 5)	intron (NM_001134457, intron 5 of 5)	-9406.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	25.74	22.58	14.8	49.93	26.12	19.29	25.35	22.99	14.99
Merged-chr3-51327937-1	chr3	51327437	51328437	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	L1M4c|LINE|L1	12707.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	107.55	119.34	83.25	128.87	153.48	135.04	152.09	180.4	104.3
Merged-chr1-21271548-1	chr1	21271048	21272048	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26764.0	NR_002858	241041.0	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	4.0	3.23	0.0	8.77	3.27	2.41	3.17	2.65	1.25
Merged-chr15-66883733-1	chr15	66883233	66884233	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7660.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	2.29	2.76	0.0	2.7	0.93	3.22	6.34	2.21	5.0
Merged-chr9-100474139-1	chr9	100473639	100474639	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033543, intron 2 of 6)	intron (NM_001033543, intron 2 of 6)	12334.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	7.44	1.84	0.0	4.72	0.93	3.22	10.56	1.33	2.5
Merged-chr10-45277183-3	chr10	45276686	45277686	+	867.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12119.0	NM_024286	78977.0	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	6.29	21.66	2.77	61.4	64.84	49.83	40.14	44.66	32.48
Merged-chr17-33772119-1	chr17	33771619	33772619	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	9456.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	30.89	16.59	24.05	31.04	18.66	26.53	7.39	7.07	1.25
Merged-chr6-16360182-1	chr6	16359682	16360682	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	538259.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	1.14	0.0	3.7	2.7	1.87	0.0	0.0	4.42	1.87
Merged-chr12-59207126-1	chr12	59206626	59207626	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	B1F|SINE|Alu	12357.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	9.15	7.37	3.7	17.54	7.93	8.04	8.45	7.52	22.48
Merged-chr17-5807334-1	chr17	5806834	5807834	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7844.0	NR_045080	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	43.48	39.17	43.47	31.71	30.32	44.21	33.8	38.47	18.74
Merged-chr15-38290305-1	chr15	38289805	38290805	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9595.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	32.04	45.16	30.52	49.25	41.52	57.87	68.65	75.61	53.71
Merged-chr19-55253420-1	chr19	55252920	55253920	+	867.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027976)	promoter-TSS (NM_027976)	51.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	286.6	292.6	223.84	259.77	253.31	219.43	259.82	289.18	141.77
Merged-chr4-105485355-2	chr4	105484862	105485862	+	867.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	328015.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	14.3	14.75	33.3	12.14	10.26	20.9	29.57	17.24	16.86
Merged-chr1-87187165-3	chr1	87186680	87187680	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027084, exon 11 of 13)	exon (NM_027084, exon 11 of 13)	-3417.0	NM_021600	11447.0	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	8.58	4.61	1.85	4.72	2.8	0.0	5.28	1.77	5.0
Merged-chr2-70091356-3	chr2	70090854	70091854	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	MLT1B|LTR|ERVL-MaLR	52228.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	18.88	14.28	2.77	35.76	23.79	11.25	12.67	10.61	9.99
Merged-chr1-53816584-3	chr1	53816070	53817070	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	MTE2b|LTR|ERVL-MaLR	-31355.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	52.63	67.27	47.17	70.17	48.05	69.93	78.16	55.71	41.22
Merged-chr12-32489972-3	chr12	32489482	32490482	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111193.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	4.58	5.07	3.7	4.72	8.86	3.22	4.22	2.65	5.0
Merged-chr3-20005800-3	chr3	20005291	20006291	+	866.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276250, intron 19 of 19)	intron (NM_001276250, intron 19 of 19)	29519.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	70.93	64.97	64.75	39.13	53.65	69.13	67.6	87.99	42.47
Merged-chr8-84968774-3	chr8	84968263	84969263	+	866.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011563)	promoter-TSS (NM_011563)	-859.0	NM_001317385	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	28.6	36.86	36.07	28.34	20.06	54.66	80.27	69.42	66.82
Merged-chr9-58276087-3	chr9	58275710	58276710	+	866.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	23046.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	227.68	306.42	184.07	202.42	170.74	199.34	322.14	387.34	201.1
Merged-chr3-90251722-3	chr3	90251236	90252236	+	866.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013901, exon 4 of 4)	exon (NM_013901, exon 4 of 4)	-2122.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	46.91	34.1	34.22	32.39	28.92	41.8	65.48	49.08	36.85
Merged-chr18-50034169-2	chr18	50033650	50034650	+	866.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360935, intron 1 of 1)	intron (NM_001360935, intron 1 of 1)	3166.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	57.21	53.45	41.62	72.87	35.45	31.35	16.9	32.72	11.24
Merged-chr2-38511827-3	chr2	38511391	38512391	+	866.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159631)	promoter-TSS (NM_001159631)	15.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	25.74	24.88	16.65	42.51	20.06	33.76	14.79	7.07	14.36
Merged-chr2-156278858-2	chr2	156278355	156279355	+	866.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172674, intron 9 of 17)	intron (NM_172674, intron 9 of 17)	-33618.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	7.44	3.69	14.8	14.17	11.66	19.29	12.67	9.29	9.99
Merged-chr14-44047977-3	chr14	44047419	44048419	+	866.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41501.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	73.79	68.66	63.82	60.05	41.99	79.58	38.02	23.88	43.09
Merged-chr1-92985932-3	chr1	92985423	92986423	+	866.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022320, exon 2 of 2)	3' UTR (NM_022320, exon 2 of 2)	7020.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	16.59	6.91	23.12	22.94	13.53	15.27	21.12	14.59	18.74
Merged-chr18-9731643-1	chr18	9731143	9732143	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	23995.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	57.78	56.22	34.22	143.04	141.82	125.39	24.29	27.86	13.74
Merged-chr6-5104461-1	chr6	5103961	5104961	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	89485.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	44.05	25.8	33.3	58.03	51.78	45.82	49.64	30.51	22.48
Merged-chr4-110351713-3	chr4	110351219	110352219	+	866.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163397, intron 1 of 5)	CpG	192.0	NM_001163397	15572.0	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV like RNA binding protein 4	protein-coding	20.02	15.21	7.4	5.4	3.27	8.04	4.22	0.88	2.5
Merged-chr17-44116196-1	chr17	44115696	44116696	+	866.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-10387.0	NM_001357996	224794.0	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	8.58	5.53	17.57	7.42	3.73	1.61	3.17	3.54	5.0
Merged-chr1-144240619-2	chr1	144240112	144241112	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	8492.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	18.31	6.45	1.85	12.82	3.27	6.43	5.28	6.19	7.49
Merged-chr19-53535615-2	chr19	53535125	53536125	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6307.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	12.59	7.83	7.4	14.17	8.4	4.82	10.56	2.65	0.62
Merged-chr8-25990186-2	chr8	25989752	25990752	+	866.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	3869.0	NM_029037	74653.0	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	9.72	9.22	8.32	18.89	10.26	14.47	16.9	16.36	18.74
Merged-chr7-96413697-2	chr7	96413197	96414197	+	866.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-71733.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	13.73	20.74	33.3	12.82	14.93	12.86	2.11	1.77	7.49
Merged-chr6-142508861-3	chr6	142508362	142509362	+	866.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302765)	promoter-TSS (NM_001302765)	-905.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	2.86	2.3	1.85	2.7	1.4	3.22	2.11	2.65	7.49
Merged-chr9-62977402-3	chr9	62976899	62977899	+	866.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	3480.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	44.05	46.54	32.37	38.46	27.06	35.37	52.81	43.33	38.72
Merged-chr7-114275537-2	chr7	114275047	114276047	+	866.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011965, intron 1 of 9)	intron (NM_011965, intron 1 of 9)	569.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	91.53	94.0	70.3	72.87	72.78	72.34	91.89	114.52	55.58
Merged-chr10-127050275-3	chr10	127049774	127050774	+	866.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010009, exon 5 of 9)	exon (NM_010009, exon 5 of 9)	2028.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	3.43	1.38	0.0	2.02	0.93	1.61	2.11	2.21	0.0
Merged-chr4-55763317-3	chr4	55762816	55763816	+	866.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230841.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.44	7.83	3.7	6.75	3.73	6.43	5.28	0.88	6.87
Merged-chr3-14572121-2	chr3	14571615	14572615	+	866.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028915, intron 18 of 18)	intron (NM_028915, intron 18 of 18)	-6556.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	4.0	4.61	7.4	7.42	4.67	1.61	2.11	7.07	0.0
Merged-chr2-68907848-3	chr2	68907356	68908356	+	866.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	L1MB3|LINE|L1	46415.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	29.75	10.6	18.5	23.62	6.06	4.02	17.96	6.63	6.25
Merged-chr8-122880155-3	chr8	122879691	122880691	+	866.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31817.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	10.87	5.99	3.7	6.75	6.53	20.9	14.79	19.46	6.25
Merged-chr2-24384978-3	chr2	24384598	24385598	+	866.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177611)	promoter-TSS (NM_177611)	-234.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	70.36	90.31	68.45	60.05	50.85	61.89	84.49	84.45	56.83
Merged-chr3-121369640-3	chr3	121369147	121370147	+	866.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-56894.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	15.45	11.98	11.1	21.59	11.66	20.09	17.96	23.43	14.36
Merged-chr13-48967294-6	chr13	48966828	48967828	+	866.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015601)	promoter-TSS (NR_015601)	500.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	229.97	319.32	295.06	198.37	269.18	280.52	283.06	303.33	216.71
Merged-chr12-102330965-1	chr12	102330465	102331465	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	MLT1I|LTR|ERVL-MaLR	47324.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	11.44	8.29	12.02	10.12	8.4	5.63	7.39	0.44	5.0
Merged-chr8-34744383-1	chr8	34743883	34744883	+	866.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63227.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.0	1.84	5.55	2.02	0.93	3.22	73.93	63.23	25.61
Merged-chr7-133635754-3	chr7	133635248	133636248	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1927.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	3.43	5.07	8.32	6.75	7.46	0.0	9.51	5.31	10.62
Merged-chr18-77065835-3	chr18	77065354	77066354	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164168, exon 1 of 14)	5' UTR (NM_001164168, exon 1 of 14)	174.0	NM_001164170	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	106.4	92.62	97.12	84.34	72.78	63.5	100.34	80.03	54.96
Merged-chr14-55778111-3	chr14	55777612	55778612	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 10 of 25)	intron (NM_080435, intron 10 of 25)	5960.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	9.72	13.36	12.95	15.52	13.53	17.68	27.46	11.05	8.74
Merged-chr4-32187338-3	chr4	32186845	32187845	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	223238.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	5.72	4.61	12.95	9.45	6.06	16.08	1.06	3.98	3.75
Merged-chr17-24549063-2	chr17	24548569	24549569	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013630)	promoter-TSS (NM_013630)	-881.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	78.94	80.64	45.32	105.26	81.17	88.42	144.7	137.51	99.3
Merged-chr6-146638686-2	chr6	146638184	146639184	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3895.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	6.29	6.45	12.02	7.42	5.6	4.02	17.96	16.36	6.25
Merged-chr1-180811186-3	chr1	180810660	180811660	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008210, intron 2 of 3)	intron (NM_008210, intron 2 of 3)	2445.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	30.89	14.75	12.95	14.17	14.93	14.47	24.29	19.46	15.61
Merged-chr13-118386746-2	chr13	118386233	118387233	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	519.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	38.33	35.94	27.75	45.21	39.19	62.7	96.11	62.79	53.08
Merged-chr10-25395559-1	chr10	25395059	25396059	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	-12809.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	5.15	5.53	5.55	7.42	6.53	10.45	6.34	2.21	7.49
Merged-chr3-30600849-3	chr3	30600381	30601381	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	62.35	86.63	40.7	58.03	53.18	34.56	78.16	77.38	54.96
Merged-chr18-34338867-1	chr18	34338367	34339367	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	7722.0	NM_025527	66384.0	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	8.01	1.38	13.87	3.37	2.8	8.04	5.28	2.65	6.25
Merged-chr13-94286248-1	chr13	94285748	94286748	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029153)	promoter-TSS (NM_029153)	-417.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	29.75	29.95	28.67	23.62	20.99	22.51	42.25	20.34	17.49
Merged-chr6-89262561-3	chr6	89262058	89263058	+	866.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23167.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	14.3	9.68	7.4	26.99	20.53	14.47	13.73	6.63	6.25
Merged-chr5-148700420-2	chr5	148699928	148700928	+	866.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41412.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	2.29	7.83	13.87	5.4	2.8	20.9	12.67	9.73	33.1
Merged-chr13-36700053-3	chr13	36699551	36700551	+	866.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	34426.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	7.44	6.45	1.85	5.4	6.06	6.43	11.62	10.61	6.25
Merged-chr2-138246086-3	chr2	138245576	138246576	+	866.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-10508.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	11.44	11.06	5.55	6.07	11.2	22.51	12.67	7.96	3.75
Merged-chr6-120189436-3	chr6	120188935	120189935	+	866.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	-4388.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	10.3	5.99	11.1	11.47	7.0	21.7	11.62	7.07	7.49
Merged-chr1-86587115-3	chr1	86586614	86587614	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172974, exon 2 of 8)	5' UTR (NM_172974, exon 2 of 8)	4193.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	38.9	25.8	16.65	43.18	31.26	32.96	40.14	32.72	11.24
Merged-chr3-142766029-3	chr3	142765478	142766478	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145546, intron 1 of 6)	intron (NM_145546, intron 1 of 6)	731.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	126.42	134.55	98.05	134.27	141.82	118.16	137.3	144.15	74.94
Merged-chr6-116266826-3	chr6	116266332	116267332	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290339, intron 1 of 6)	L1MC1|LINE|L1	300.0	NM_001290339	67492.0	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	73.22	66.81	46.25	97.16	57.38	38.58	87.66	78.26	30.6
Merged-chr6-51362777-3	chr6	51362286	51363286	+	866.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16924.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	4.0	5.07	5.55	4.05	3.27	4.02	6.34	2.65	5.62
Merged-chr16-48865188-3	chr16	48864674	48865674	+	866.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7434.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	4.58	8.29	14.8	7.42	1.4	0.0	3.17	9.73	6.87
Merged-chr3-105066642-4	chr3	105066154	105067154	+	866.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029228)	promoter-TSS (NM_029228)	-190.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	56.06	53.45	24.05	39.13	41.05	26.53	47.53	43.77	23.11
Merged-chr14-105232630-2	chr14	105232120	105233120	+	866.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26053.0	NM_029561	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	6.29	5.99	0.0	4.72	2.8	4.82	5.28	2.21	5.0
Merged-chr13-98264283-2	chr13	98263791	98264791	+	866.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271391, intron 1 of 7)	intron (NM_001271391, intron 1 of 7)	1215.0	NM_001271388	68558.0	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	18.88	17.97	23.12	14.17	21.93	12.86	16.9	19.01	11.24
Merged-chr6-57743533-2	chr6	57743039	57744039	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	41084.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	2.86	2.3	14.8	7.42	1.87	4.82	5.28	2.65	3.75
Merged-chr1-161443867-3	chr1	161443352	161444352	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48414.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	9.15	9.22	1.85	12.14	3.27	3.22	8.45	3.98	3.75
Merged-chr13-41128497-3	chr13	41127985	41128985	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324525, intron 4 of 27)	intron (NM_001324525, intron 4 of 27)	10474.0	NM_001324525	637277.0		NM_001324525	ENSMUSG00000038651	Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	11.44	14.75	11.1	10.12	9.33	8.04	14.79	8.84	6.87
Merged-chr18-57593922-1	chr18	57593422	57594422	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 4 of 6)	intron (NM_029290, intron 4 of 6)	-41525.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	17.73	8.75	12.95	10.12	7.46	13.66	11.62	3.54	9.99
Merged-chr1-180698220-1	chr1	180697720	180698720	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1186.0	NM_013729	27217.0	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	5.72	0.92	0.0	4.72	2.33	8.04	3.17	1.33	1.25
Merged-chr3-79181821-3	chr3	79181322	79182322	+	866.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31097.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	53.77	49.76	31.45	79.62	61.11	51.44	118.29	117.62	62.45
Merged-chr1-184083263-1	chr1	184082763	184083763	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48882.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	6.86	9.22	1.85	18.22	9.8	8.84	4.22	5.75	9.99
Merged-chr19-14243975-1	chr19	14243475	14244475	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	191975.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	7.44	3.69	0.0	9.45	1.4	3.22	6.34	2.65	6.87
Merged-chr8-11049076-1	chr8	11048576	11049576	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-40646.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	5.15	2.3	6.47	6.75	7.93	3.22	3.17	0.44	3.75
Merged-chr8-72325625-1	chr8	72325125	72326125	+	866.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6563.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	14.87	11.52	15.72	16.87	11.2	17.68	19.01	7.52	9.99
Merged-chr5-3343105-4	chr5	3342633	3343633	+	866.3214109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-760.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	195.64	179.71	74.92	209.16	199.67	136.64	177.44	206.05	73.69
Merged-chr6-83436725-3	chr6	83436210	83437210	+	866.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	4968.0	NM_183138	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	18.31	15.21	7.4	12.14	8.86	21.7	19.01	11.05	6.25
Merged-chr10-57731842-3	chr10	57731348	57732348	+	866.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-53075.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	40.62	36.86	12.95	35.09	25.19	33.76	28.52	31.84	23.11
Merged-chr4-33242738-3	chr4	33242234	33243234	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	6053.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	14.3	20.27	39.77	15.52	8.4	10.45	14.79	5.75	6.25
Merged-chr6-122870088-3	chr6	122869580	122870580	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	20.59	26.26	9.25	29.69	34.99	46.62	30.63	22.55	21.86
Merged-chr12-34449542-3	chr12	34449038	34450038	+	866.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	79351.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	45.76	57.6	37.0	47.9	43.39	40.19	24.29	19.9	18.11
Merged-chr16-50632822-3	chr16	50632303	50633303	+	866.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-41649.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	2.29	2.76	3.7	7.42	5.6	0.0	1.06	7.96	5.0
Merged-chr19-34879035-4	chr19	34878532	34879532	+	866.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001114339, exon 1 of 7)	exon (NM_001114339, exon 1 of 7)	423.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	86.38	56.22	45.32	91.76	40.59	52.25	71.82	41.56	36.85
Merged-chr4-88433553-3	chr4	88433073	88434073	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 3 of 6)	intron (NM_025760, intron 3 of 6)	5353.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	22.31	22.12	20.35	25.64	30.32	20.09	39.08	57.04	21.86
Merged-chr2-76114952-3	chr2	76114464	76115464	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081033, intron 9 of 19)	intron (NM_001081033, intron 9 of 19)	-132997.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	4.58	3.69	3.7	4.72	0.47	1.61	1.06	2.21	0.0
Merged-chr11-68459648-3	chr11	68459155	68460155	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	L1ME2|LINE|L1	27530.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	27.46	29.03	16.65	47.9	29.86	40.99	25.35	7.52	27.48
Merged-chr9-21328252-3	chr9	21327753	21328753	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359227, intron 1 of 22)	intron (NM_001359227, intron 1 of 22)	7534.0	NM_001199186	68682.0	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	30.89	21.2	3.7	22.27	14.46	20.9	21.12	26.97	25.61
Merged-chr8-117158514-3	chr8	117157992	117158992	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081151, intron 1 of 10)	CpG	357.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	113.84	65.43	84.17	79.62	63.91	68.32	77.1	56.6	23.73
Merged-chr9-95546874-3	chr9	95546385	95547385	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12932.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	21.17	12.9	7.4	29.69	11.2	19.29	29.57	19.01	9.37
Merged-chr12-75529589-3	chr12	75529092	75530092	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	66608.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	14.87	10.14	8.32	21.59	15.86	13.66	19.01	15.03	9.99
Merged-chr1-127978205-3	chr1	127977663	127978663	+	866.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	109390.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	10.3	10.14	7.4	15.52	11.66	12.86	11.62	14.15	11.24
Merged-chr9-49484976-2	chr9	49484504	49485504	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 1 of 21)	intron (NM_172770, intron 1 of 21)	1221.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	20.02	30.41	27.75	56.68	48.98	46.62	9.51	4.42	8.74
Merged-chr11-95595609-1	chr11	95595109	95596109	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7911.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	5.15	5.53	3.7	6.07	0.47	1.61	2.11	1.33	3.75
Merged-chr1-144245066-3	chr1	144244560	144245560	+	866.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_015811, exon 5 of 5)	3' UTR (NM_015811, exon 5 of 5)	4044.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	53.77	52.07	38.85	64.77	53.18	31.35	24.29	18.13	33.1
Merged-chrX-38456937-3	chrX	38456440	38457440	+	866.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010685)	promoter-TSS (NM_010685)	-480.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	53.2	61.75	45.32	50.6	41.05	33.76	51.75	63.67	50.59
Merged-chrX-77802581-3	chrX	77802076	77803076	+	866.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6616.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	26.31	24.42	20.35	10.8	16.33	37.78	17.96	19.46	16.24
Merged-chr13-97254021-1	chr13	97253521	97254521	+	866.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007930)	TTS (NM_007930)	12916.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	17.73	15.21	5.55	6.07	2.8	8.04	6.34	5.75	6.25
Merged-chr9-105780199-1	chr9	105779699	105780699	+	866.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172927, intron 6 of 7)	LTR16A1|LTR|ERVL	29449.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	10.87	6.91	3.7	16.87	11.66	4.82	1.06	0.88	1.25
Merged-chr18-39638977-2	chr18	39638488	39639488	+	866.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4A|LINE|L1	-134509.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	16.59	9.22	7.4	14.17	2.8	8.84	10.56	14.59	16.24
Merged-chr3-146059595-3	chr3	146059104	146060104	+	866.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172864, intron 16 of 22)	Tigger7|DNA|TcMar-Tigger	48432.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	13.16	14.28	1.85	6.75	8.4	4.02	12.67	14.59	8.12
Merged-chr4-101302270-3	chr4	101301754	101302754	+	866.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36972.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	8.58	3.23	4.62	2.02	5.13	4.82	1.06	4.42	3.75
Merged-chr6-28486813-5	chr6	28486300	28487300	+	866.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	intron (NM_019776, intron 1 of 23)	6452.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	84.66	97.23	81.4	51.95	37.79	71.54	104.56	93.3	71.82
Merged-chr12-31634038-3	chr12	31633543	31634543	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007530, intron 1 of 6)	RSINE1|SINE|B4	554.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	83.52	96.3	74.0	112.68	130.16	69.13	142.59	124.69	46.22
Merged-chr4-45499431-3	chr4	45498945	45499945	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	31383.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	30.32	22.58	25.9	24.96	17.26	11.25	26.4	20.34	3.75
Merged-chr10-50657513-3	chr10	50657025	50658025	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 11 of 41)	intron (NM_198007, intron 11 of 41)	64856.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	8.01	7.83	1.85	10.8	5.13	3.22	7.39	10.61	1.25
Merged-chr9-69706065-3	chr9	69705553	69706553	+	866.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54887.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	6.86	4.15	2.77	8.1	8.86	12.06	12.67	8.84	7.49
Merged-chr12-56336726-3	chr12	56336218	56337218	+	866.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9176.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	26.31	38.71	47.17	41.83	35.45	46.62	46.47	46.87	34.35
Merged-chr14-122557528-3	chr14	122557055	122558055	+	866.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144844, intron 1 of 23)	intron (NM_144844, intron 1 of 23)	23227.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	16.59	28.57	21.27	13.49	18.66	6.43	28.52	22.55	9.99
Merged-chr10-80376365-3	chr10	80375868	80376868	+	866.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6731.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	5.72	5.53	1.85	2.7	0.0	9.65	6.34	1.33	4.37
Merged-chr2-158155794-3	chr2	158155292	158156292	+	866.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9400.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	23.45	20.27	14.8	26.31	12.13	23.31	45.42	32.28	10.62
Merged-chr15-3982925-3	chr15	3982433	3983433	+	866.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145930, exon 6 of 6)	3' UTR (NM_145930, exon 6 of 6)	-3360.0	NM_134099	106052.0	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	8.58	7.37	13.87	24.29	14.46	19.29	14.79	13.71	18.11
Merged-chr2-90395168-3	chr2	90394670	90395670	+	866.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F3|LINE|L1	-5470.0	NM_146263	258330.0	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	1.14	0.0	0.0	0.0	1.4	4.02	1.06	0.88	0.0
Merged-chr11-51935259-3	chr11	51934745	51935745	+	866.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-32386.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	30.32	23.96	16.65	35.09	18.66	28.94	28.52	20.34	23.11
Merged-chr2-36224794-2	chr2	36224298	36225298	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-5628.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	20.59	13.82	16.65	20.92	17.26	15.27	24.29	17.24	12.49
Merged-chr1-177441178-1	chr1	177440678	177441678	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1173.0	NM_001355099	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	58.35	78.33	68.45	54.65	76.97	66.71	76.05	76.94	56.21
Merged-chr19-28827930-1	chr19	28827430	28828430	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-7236.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	1.14	1.84	5.55	5.4	1.4	1.61	2.11	0.0	6.25
Merged-chr16-92475519-1	chr16	92475019	92476019	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-3223.0	NM_029740	76785.0	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	5.72	3.69	0.0	9.45	5.6	3.22	2.11	2.21	1.25
Merged-chr5-35551973-1	chr5	35551473	35552473	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23097.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	18.31	14.75	17.57	18.22	14.93	20.9	9.51	7.52	5.0
Merged-chr9-111731938-2	chr9	111731440	111732440	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41592.0	NM_001324546	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	1.14	3.69	1.85	2.02	3.27	5.63	0.0	4.42	3.75
Merged-chr10-97241627-2	chr10	97241124	97242124	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-181854.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	3.43	0.46	1.85	3.37	4.2	5.63	1.06	0.44	2.5
Merged-chrX-155265596-3	chrX	155265107	155266107	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313718, intron 2 of 15)	intron (NM_001313718, intron 2 of 15)	3164.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	3.43	4.15	5.55	6.75	4.67	3.22	5.28	4.86	8.74
Merged-chr1-182461524-1	chr1	182461024	182462024	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	52357.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	12.01	7.83	12.02	10.12	8.4	12.86	8.45	6.63	6.87
Merged-chr5-143731057-1	chr5	143730557	143731557	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029749, intron 1 of 17)	intron (NM_029749, intron 1 of 17)	1223.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	40.04	69.58	52.72	45.21	30.32	37.78	67.6	66.33	28.73
Merged-chr2-61138709-1	chr2	61138209	61139209	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163558.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	13.16	18.89	5.55	40.48	23.33	16.08	7.39	2.21	5.0
Merged-chr4-34388988-1	chr4	34388488	34389488	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-161627.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	94.39	101.37	46.25	126.17	96.57	92.44	83.44	101.7	54.33
Merged-chr9-16357970-1	chr9	16357470	16358470	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	20261.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	1.14	4.15	0.92	2.7	1.87	2.41	4.22	1.77	8.12
Merged-chr1-9804765-1	chr1	9804265	9805265	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	Lx9|LINE|L1	6635.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	20.02	20.74	10.17	12.82	10.73	16.88	28.52	16.36	22.48
Merged-chr9-45244076-1	chr9	45243576	45244576	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	22631.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	122.99	163.58	147.07	95.14	95.17	143.88	138.36	145.92	101.17
Merged-chr2-32151456-1	chr2	32150956	32151956	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172661, intron 1 of 29)	CpG	308.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	39.47	32.25	34.22	51.95	28.46	33.76	41.19	30.95	15.61
Merged-chr18-65742479-1	chr18	65741979	65742979	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177028, intron 11 of 14)	intron (NM_177028, intron 11 of 14)	44211.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	14.3	7.83	2.77	8.77	10.26	1.61	11.62	4.42	1.87
Merged-chr11-4122733-2	chr11	4122257	4123257	+	866.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4028.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	37.18	26.26	13.87	29.69	29.86	33.76	31.69	26.97	16.86
Merged-chrX-167826129-3	chrX	167825616	167826616	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359072, intron 1 of 16)	intron (NM_001359072, intron 1 of 16)	28961.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	2.29	4.15	3.7	7.42	2.33	6.43	3.17	4.42	6.87
Merged-chr6-97148789-6	chr6	97148286	97149286	+	866.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175313)	promoter-TSS (NM_175313)	97.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	188.78	251.59	138.74	197.02	213.66	169.6	144.7	149.45	83.06
Merged-chr8-116629174-3	chr8	116628662	116629662	+	865.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	intron (NM_029441, intron 1 of 6)	103829.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	46.91	34.1	50.87	26.99	17.73	16.08	55.98	59.25	36.22
Merged-chr6-54772221-3	chr6	54771722	54772722	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-44694.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	24.6	15.21	23.12	15.52	14.46	30.54	32.74	29.63	32.48
Merged-chr5-138341889-3	chr5	138341399	138342399	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61390.0	NM_016964	50878.0	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	28.6	29.95	19.42	19.57	17.73	35.37	41.19	26.09	26.85
Merged-chr5-21141431-3	chr5	21140947	21141947	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34832.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	9.15	5.99	3.7	13.49	6.06	11.25	7.39	7.52	3.75
Merged-chrX-150458840-3	chrX	150458345	150459345	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359039, intron 1 of 2)	intron (NM_001359039, intron 1 of 2)	305.0	NM_001164683	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	8.58	13.82	9.25	10.8	9.33	18.49	20.07	24.32	9.99
Merged-chr11-121791618-3	chr11	121791127	121792127	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38591.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	25.17	34.1	21.27	35.76	31.26	70.73	25.35	22.11	22.48
Merged-chr1-89891592-3	chr1	89891103	89892103	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178119, exon 18 of 18)	3' UTR (NM_178119, exon 18 of 18)	39573.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	13.73	7.37	11.1	22.94	11.2	16.08	9.51	7.07	11.87
Merged-chr15-98699621-3	chr15	98699138	98700138	+	865.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8589.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	6.86	4.15	1.85	0.67	3.73	0.0	2.11	1.33	2.5
Merged-chr14-64311796-2	chr14	64311291	64312291	+	865.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253714, intron 1 of 4)	intron (NM_001253714, intron 1 of 4)	105165.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	11.44	7.37	5.55	14.17	19.13	8.04	10.56	8.84	0.62
Merged-chr16-18345398-3	chr16	18344886	18345886	+	865.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	-1454.0	NM_001359111	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	6.86	4.61	0.92	3.37	0.47	0.0	5.28	3.54	4.37
Merged-chr11-85574646-3	chr11	85574147	85575147	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 21 of 25)	intron (NM_138681, intron 21 of 25)	145097.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	16.59	17.05	3.7	16.19	18.66	14.47	8.45	19.9	11.24
Merged-chr14-67359231-3	chr14	67358703	67359703	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045961, intron 3 of 5)	intron (NR_045961, intron 3 of 5)	38539.0	NR_045961	73977.0	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	31.46	24.42	9.25	11.47	16.79	15.27	19.01	18.13	19.98
Merged-chr4-144898176-3	chr4	144897641	144898641	+	865.888916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	5004.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	35.47	42.85	33.3	55.33	69.51	45.01	58.09	66.33	33.1
Merged-chr1-40324532-3	chr1	40324039	40325039	+	865.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133193)	promoter-TSS (NM_133193)	-50.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	32.61	37.32	12.95	36.43	36.85	40.19	41.19	41.12	43.72
Merged-chr8-40424242-2	chr8	40423793	40424793	+	865.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178395, intron 1 of 12)	CpG	478.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	13.16	6.45	3.7	12.14	2.8	6.43	1.06	0.0	2.5
Merged-chr1-132391779-3	chr1	132391274	132392274	+	865.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178874)	promoter-TSS (NM_178874)	-388.0	NM_178874	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.15	2.76	7.4	7.42	7.46	3.22	7.39	1.33	2.5
Merged-chr1-93115338-3	chr1	93114843	93115843	+	865.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13469.0	NM_001110315	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	29.75	13.36	15.72	15.52	12.13	15.27	20.07	10.61	5.0
Merged-chr11-76605833-3	chr11	76605344	76606344	+	865.8388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-28105.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	89.81	100.45	55.5	92.44	86.3	57.87	141.53	152.99	64.95
Merged-chr17-27032999-2	chr17	27032493	27033493	+	865.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027544, intron 4 of 5)	intron (NM_027544, intron 4 of 5)	3734.0	NM_027544	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	2.86	2.3	9.25	8.1	1.87	3.22	0.0	0.88	3.12
Merged-chr9-7880182-3	chr9	7879671	7880671	+	865.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D_MM|LTR|ERV1	-7001.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	5.15	6.91	8.32	1.35	4.67	6.43	7.39	3.54	3.75
Merged-chr6-39463075-3	chr6	39462512	39463512	+	865.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172477, exon 19 of 19)	3' UTR (NM_172477, exon 19 of 19)	42634.0	NR_152168	621427.0	Mm.389742	NR_152168	ENSMUSG00000068601	Gm10244	Anmkrn1	predicted gene 10244	ncRNA	3.43	3.23	2.77	10.8	4.67	4.82	10.56	7.52	0.0
Merged-chr3-54316872-1	chr3	54316372	54317372	+	865.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-44235.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	5.15	4.15	5.55	13.49	16.79	32.96	17.96	18.13	20.61
Merged-chrX-98989792-3	chrX	98989293	98990293	+	865.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52012.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	1.72	2.76	0.0	0.67	2.33	1.61	4.22	0.88	2.5
Merged-chrX-135601848-3	chrX	135601352	135602352	+	865.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3075.0	NM_130888	170722.0	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	2.86	2.3	0.0	2.02	3.73	1.61	3.17	3.1	0.0
Merged-chr10-15321739-1	chr10	15321239	15322239	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-470038.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	4.58	6.91	5.55	4.72	10.73	4.82	4.22	7.52	4.37
Merged-chr5-72803043-1	chr5	72802543	72803543	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-50266.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	9.15	6.45	3.7	32.39	12.6	24.11	11.62	10.17	0.0
Merged-chr10-79798402-2	chr10	79797885	79798885	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	MTE2b|LTR|ERVL-MaLR	4813.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	9.15	6.91	7.4	8.1	13.53	16.08	23.24	21.22	22.48
Merged-chr6-101545798-1	chr6	101545298	101546298	+	865.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-167901.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	1.14	4.61	1.85	4.05	3.27	0.0	4.22	2.21	4.37
Merged-chr14-13356183-3	chr14	13355684	13356684	+	865.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	71404.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	2.29	0.46	0.0	6.75	2.33	4.82	2.11	3.1	3.75
Merged-chr9-57708560-3	chr9	57708073	57709073	+	865.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153799)	promoter-TSS (NM_153799)	4.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	110.41	113.81	101.74	123.47	107.3	143.07	124.63	112.75	91.18
Merged-chr12-91769618-3	chr12	91769134	91770134	+	865.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	16802.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	11.44	5.99	9.25	4.72	7.0	11.25	16.9	11.5	6.87
Merged-chr1-154258792-2	chr1	154258287	154259287	+	865.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108050, intron 1 of 2)	intron (NR_108050, intron 1 of 2)	-1881.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	8.58	6.91	2.77	12.14	14.93	9.65	6.34	4.42	14.99
Merged-chr14-62231230-3	chr14	62230734	62231734	+	865.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61745.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	22.31	23.96	22.2	22.94	21.93	38.58	32.74	23.43	43.09
Merged-chr5-31194057-3	chr5	31193530	31194530	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001127355)	promoter-TSS (NM_001127355)	726.0	NM_153680	266781.0	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	241.41	313.79	241.41	199.04	271.51	235.51	252.43	273.7	190.48
Merged-chr8-83773342-1	chr8	83772842	83773842	+	865.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-32031.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	10.87	11.98	9.25	37.11	24.72	42.6	13.73	12.38	23.11
Merged-chr2-103504614-3	chr2	103504094	103505094	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19441.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	26.31	46.54	34.22	34.41	42.92	51.44	28.52	36.7	31.23
Merged-chr15-6396132-3	chr15	6395637	6396637	+	865.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	9389.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	37.18	23.96	15.72	37.78	18.19	22.51	17.96	8.4	11.24
Merged-chr8-126542324-1	chr8	126541824	126542824	+	865.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51112.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.58	7.83	3.7	8.1	3.27	6.43	7.39	2.65	3.75
Merged-chr15-64128088-2	chr15	64127577	64128577	+	865.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 17 of 28)	intron (NM_001276461, intron 17 of 28)	-67629.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	33.18	14.75	12.02	26.31	24.26	14.47	10.56	16.8	5.0
Merged-chr2-92185329-5	chr2	92184762	92185762	+	865.657166	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109691)	promoter-TSS (NM_001109691)	-221.0	NM_001109691	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	195.64	148.37	153.54	153.84	97.03	125.39	171.1	137.51	124.91
Merged-chr7-128633370-3	chr7	128632870	128633870	+	865.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178641, intron 1 of 19)	intron (NM_178641, intron 1 of 19)	22005.0	NM_178641	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	6.86	2.76	0.0	6.07	1.87	3.22	7.39	3.54	1.25
Merged-chr4-115784975-3	chr4	115784448	115785448	+	865.6000369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181040, exon 1 of 9)	5' UTR (NM_181040, exon 1 of 9)	134.0	NM_181040	230649.0	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	14.3	12.44	16.65	24.29	13.53	40.19	28.52	19.01	25.61
Merged-chr4-11989497-2	chr4	11988996	11989996	+	865.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040577, intron 4 of 4)	intron (NR_040577, intron 4 of 4)	22922.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	6.29	5.07	9.25	2.7	1.87	4.02	5.28	2.65	5.0
Merged-chr9-89228309-3	chr9	89227803	89228803	+	865.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	L1MB2|LINE|L1	16919.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	39.47	57.6	45.32	55.33	41.99	38.58	55.98	49.96	25.61
Merged-chr7-30336595-3	chr7	30336097	30337097	+	865.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14222.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	3.43	5.99	0.0	5.4	2.8	0.0	2.11	0.0	3.12
Merged-chr17-78989156-3	chr17	78988632	78989632	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171004, intron 2 of 18)	intron (NM_001171004, intron 2 of 18)	19373.0	NM_001171005	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	8.58	5.53	2.77	17.54	5.6	7.23	4.22	6.63	2.5
Merged-chr1-167349335-3	chr1	167348845	167349845	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019993)	promoter-TSS (NM_019993)	-646.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	69.79	68.66	32.37	54.65	73.24	96.45	61.26	48.2	35.6
Merged-chr9-83576117-3	chr9	83575612	83576612	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	27774.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	66.36	40.09	14.8	85.69	55.98	32.96	33.8	22.99	10.62
Merged-chr6-87842889-3	chr6	87842393	87843393	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013493, exon 5 of 5)	3' UTR (NM_013493, exon 5 of 5)	-4134.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	31.46	15.21	14.8	25.64	14.0	14.47	17.96	21.22	16.24
Merged-chr11-88235560-3	chr11	88235060	88236060	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31172.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	14.87	10.14	5.55	12.82	18.19	12.06	33.8	35.37	13.12
Merged-chr5-129501314-3	chr5	129500828	129501828	+	865.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172276)	promoter-TSS (NM_172276)	97.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	133.86	217.95	159.09	118.08	197.33	166.38	203.84	149.89	103.67
Merged-chr4-70578417-2	chr4	70577915	70578915	+	865.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-43487.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	6.86	0.92	0.0	4.72	0.93	2.41	1.06	0.44	0.62
Merged-chr11-117970059-3	chr11	117969539	117970539	+	865.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007707)	promoter-TSS (NM_007707)	-673.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	32.61	30.87	29.6	35.76	25.66	24.92	31.69	22.55	12.49
Merged-chr11-84828329-2	chr11	84827850	84828850	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046281)	promoter-TSS (NR_046281)	653.0	NM_177564	192970.0	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	84.09	57.14	72.15	101.21	73.24	71.54	103.51	129.11	49.96
Merged-chr7-46987698-2	chr7	46987116	46988116	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10984.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	16.59	26.26	45.32	45.21	24.72	37.78	57.03	70.75	22.48
Merged-chr13-102665759-1	chr13	102665259	102666259	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27788.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	22.31	17.51	22.2	13.49	4.67	6.43	30.63	25.65	8.74
Merged-chr13-41515946-3	chr13	41515471	41516471	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28611.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	10.3	4.15	3.7	7.42	2.33	11.25	5.28	3.1	11.24
Merged-chr8-83144392-2	chr8	83143873	83144873	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20979.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	75.51	126.25	58.27	100.53	83.51	99.67	33.8	13.71	28.73
Merged-chr5-139285538-3	chr5	139285026	139286026	+	865.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	32029.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	88.67	104.6	86.02	95.81	80.71	166.38	91.89	108.77	91.18
Merged-chr8-40598500-2	chr8	40597978	40598978	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 3 of 13)	intron (NM_001040699, intron 3 of 13)	36314.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	25.17	29.03	10.17	20.92	24.72	28.13	113.01	155.64	95.55
Merged-chr14-122608505-2	chr14	122607994	122608994	+	865.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	74166.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	7.44	2.76	11.1	8.77	5.6	4.82	9.51	7.52	6.25
Merged-chr7-99539485-3	chr7	99538929	99539929	+	865.4761960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	3943.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	24.6	23.5	46.25	24.29	19.13	21.7	25.35	14.59	19.36
Merged-chr8-85013424-3	chr8	85012924	85013924	+	865.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_052011, exon 2 of 10)	non-coding (NR_052011, exon 2 of 10)	984.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	5.15	1.38	7.4	4.72	1.4	3.22	3.17	0.44	3.75
Merged-chr2-5801465-3	chr2	5800972	5801972	+	865.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133837, intron 10 of 12)	intron (NM_133837, intron 10 of 12)	-43562.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	24.6	20.74	1.85	24.29	26.59	14.47	17.96	14.59	12.49
Merged-chr19-6288198-3	chr19	6287711	6288711	+	865.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	11315.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	22.88	10.6	11.1	16.87	6.06	8.84	11.62	6.19	11.87
Merged-chr11-23659083-3	chr11	23658577	23659577	+	865.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023651, intron 1 of 3)	intron (NM_023651, intron 1 of 3)	-6597.0	NM_028956	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	58.35	46.08	55.5	98.51	57.85	67.52	85.55	86.66	33.72
Merged-chr8-70695886-3	chr8	70695375	70696375	+	865.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1864.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	161.89	131.78	95.27	133.59	129.22	103.69	126.74	152.11	80.56
Merged-chr7-37490505-3	chr7	37490009	37491009	+	865.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172385, intron 5 of 5)	intron (NM_172385, intron 5 of 5)	279243.0	NM_172385	243937.0	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	11.44	11.06	11.1	12.14	9.33	6.43	7.39	5.75	11.24
Merged-chr5-104459585-3	chr5	104459074	104460074	+	865.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008861, exon 1 of 15)	5' UTR (NM_008861, exon 1 of 15)	117.0	NM_008861	18764.0	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	14.3	6.45	5.55	3.37	5.6	10.45	15.84	4.42	2.5
Merged-chr13-32801043-3	chr13	32800548	32801548	+	865.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	-982.0	NM_030215	78903.0	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	14.87	23.96	23.12	16.87	13.53	14.47	15.84	18.57	9.37
Merged-chr14-103550649-3	chr14	103550149	103551149	+	865.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 8 of 30)	LTR55|LTR|ERVL?	37308.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.29	3.69	1.85	5.4	1.87	4.82	3.17	3.98	2.5
Merged-chr12-110841789-2	chr12	110841293	110842293	+	865.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011973)	promoter-TSS (NM_011973)	764.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	54.35	49.76	43.47	86.36	63.45	58.68	50.7	69.86	31.85
Merged-chr12-111676528-2	chr12	111676032	111677032	+	865.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1573.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	55.49	91.7	58.27	95.81	60.18	84.4	117.24	128.67	73.07
Merged-chr4-48076865-2	chr4	48076362	48077362	+	865.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	25616.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.86	3.23	1.85	4.72	3.73	1.61	3.17	7.96	3.75
Merged-chr4-154189138-2	chr4	154188626	154189626	+	865.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162977, intron 3 of 36)	intron (NM_001162977, intron 3 of 36)	18413.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	17.73	20.27	24.05	9.45	8.86	22.51	11.62	8.84	19.98
Merged-chr7-101563205-1	chr7	101562705	101563705	+	865.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-2340.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	7.44	2.76	3.7	6.07	2.33	6.43	62.31	45.54	38.72
Merged-chr17-35195438-3	chr17	35194912	35195912	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105939)	TTS (NR_105939)	440.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	274.59	237.76	151.69	154.51	103.1	67.52	21.12	20.78	16.24
Merged-chr5-88500058-3	chr5	88499561	88500561	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12086.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	5.72	4.61	1.85	5.4	1.87	3.22	6.34	3.1	8.74
Merged-chr13-12462012-1	chr13	12461512	12462512	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018886)	promoter-TSS (NM_018886)	-274.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	81.23	60.36	49.95	109.98	74.17	118.16	105.62	107.89	44.97
Merged-chrX-140821703-2	chrX	140821204	140822204	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-8271.0	NM_031381	83555.0	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	8.58	11.98	11.1	14.84	11.66	11.25	2.11	4.42	5.0
Merged-chr15-55388266-3	chr15	55387774	55388774	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 13 of 47)	intron (NM_181277, intron 13 of 47)	80524.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	10.3	13.82	11.1	16.87	23.33	24.11	12.67	14.59	16.86
Merged-chr2-45200784-1	chr2	45200284	45201284	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83342.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	35.47	28.11	8.32	46.56	21.93	33.76	35.91	27.86	14.99
Merged-chr5-111141660-3	chr5	111141144	111142144	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	137500.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	110.98	92.62	99.89	89.06	89.1	61.89	76.05	76.49	38.1
Merged-chr9-60832914-1	chr9	60832414	60833414	+	865.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	L1MB2|LINE|L1	38472.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	16.59	8.29	6.47	40.48	17.73	16.08	17.96	11.94	6.87
Merged-chr10-117629445-3	chr10	117628937	117629937	+	865.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027468)	promoter-TSS (NM_027468)	-63.0	NM_027468	70574.0	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	3.43	2.76	1.85	4.72	1.4	3.22	7.39	2.21	1.25
Merged-chr17-5941531-3	chr17	5941001	5942001	+	865.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113353, exon 1 of 27)	exon (NM_001113353, exon 1 of 27)	221.0	NM_001113352	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	24.03	11.52	12.95	22.94	18.66	8.04	29.57	13.71	16.86
Merged-chr8-71633351-3	chr8	71632824	71633824	+	865.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 39 of 41)	intron (NM_001029873, intron 39 of 41)	-2218.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	23.45	18.43	3.7	24.96	10.73	7.23	11.62	13.27	4.37
Merged-chr15-58344084-3	chr15	58343584	58344584	+	865.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19915.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	113.27	98.15	89.72	81.64	61.11	60.28	136.25	156.09	69.32
Merged-chr8-105283304-3	chr8	105282807	105283807	+	865.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166394, exon 5 of 7)	exon (NM_001166394, exon 5 of 7)	6221.0	NM_001166394	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	5.15	1.38	5.55	1.35	1.4	1.61	3.17	0.44	1.25
Merged-chr7-99173072-2	chr7	99172566	99173566	+	865.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026384, intron 1 of 7)	intron (NM_026384, intron 1 of 7)	9647.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	13.16	3.23	13.87	2.02	0.93	3.22	0.0	2.21	2.5
Merged-chr9-44966996-2	chr9	44966509	44967509	+	865.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1409.0	NM_145400	140630.0	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	9.15	10.6	10.17	9.45	7.0	6.43	7.39	7.52	11.87
Merged-chr10-62503357-5	chr10	62502829	62503829	+	865.238098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm2|SINE|B2	4428.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	84.66	77.87	67.52	102.56	78.37	81.99	132.02	106.56	51.84
Merged-chr4-128728623-3	chr4	128728130	128729130	+	865.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	1059.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	223.67	235.46	172.04	164.63	148.35	147.9	240.81	274.14	148.01
Merged-chr13-101801507-3	chr13	101801050	101802050	+	865.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33333.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	65.79	40.55	17.57	89.06	57.85	25.72	71.82	51.73	23.11
Merged-chr19-34244237-1	chr19	34243737	34244737	+	865.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 7 of 8)	intron (NM_007392, intron 7 of 8)	11136.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	2.86	3.23	6.47	8.1	7.0	5.63	60.2	53.94	31.23
Merged-chr4-40242092-2	chr4	40241590	40242590	+	865.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-2265.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	14.3	11.06	6.47	8.77	9.33	12.06	12.67	7.52	9.37
Merged-chr2-70091952-3	chr2	70091440	70092440	+	865.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	RLTR14|LTR|ERV1	52814.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	15.45	19.81	9.25	45.21	25.66	23.31	12.67	16.36	9.37
Merged-chr5-3381966-3	chr5	3381480	3382480	+	865.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	L1MB7|LINE|L1	38087.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	24.6	29.03	22.2	58.7	43.39	32.15	38.02	34.49	23.73
Merged-chr2-160060271-3	chr2	160059783	160060783	+	865.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43630.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	50.91	58.06	39.77	60.05	36.39	75.56	34.85	35.37	28.1
Merged-chr10-82985018-3	chr10	82984572	82985572	+	865.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021439)	promoter-TSS (NM_021439)	-425.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	9.15	11.52	6.47	11.47	8.86	3.22	8.45	3.1	6.25
Merged-chr13-59510157-3	chr13	59509664	59510664	+	865.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	34287.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	4.58	4.61	1.85	2.7	3.27	4.82	10.56	4.42	3.75
Merged-chr18-84086624-3	chr18	84086096	84087096	+	865.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081300)	promoter-TSS (NM_001081300)	-34.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	50.34	55.29	56.42	58.03	48.52	43.4	73.93	80.03	57.46
Merged-chr4-9073975-3	chr4	9073479	9074479	+	865.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-195314.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	14.3	5.07	12.02	10.8	16.33	9.65	33.8	14.59	14.99
Merged-chr3-27202059-3	chr3	27201437	27202437	+	865.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	18933.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	80.09	68.2	38.85	70.85	73.24	69.93	71.82	56.16	35.6
Merged-chr12-32305900-3	chr12	32305391	32306391	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-72898.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	49.2	67.74	56.42	56.0	78.37	95.65	87.66	103.02	76.82
Merged-chr19-40818923-3	chr19	40818436	40819436	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12343.0	NM_172839	240665.0	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	9.72	5.07	7.4	8.77	9.8	9.65	6.34	13.27	9.99
Merged-chr3-51270627-3	chr3	51270118	51271118	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6143.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	75.51	80.18	57.35	72.19	46.18	54.66	84.49	97.28	37.47
Merged-chr7-28380304-3	chr7	28379837	28380837	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1109.0	NM_011756	22695.0	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	352.96	522.07	299.68	329.26	357.35	324.73	364.38	570.4	306.64
Merged-chr16-30123463-3	chr16	30122964	30123964	+	865.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	58107.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	4.58	0.92	5.55	4.05	2.8	0.0	1.06	4.42	6.87
Merged-chr2-158176529-3	chr2	158176034	158177034	+	865.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-15474.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	227.68	197.22	155.39	278.66	237.45	218.63	254.54	249.82	126.78
Merged-chr9-70367146-3	chr9	70366661	70367661	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 19 of 27)	intron (NM_181072, intron 19 of 27)	38592.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	18.31	29.03	23.12	24.29	30.79	43.4	17.96	14.59	15.61
Merged-chr4-134094132-3	chr4	134093640	134094640	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013706, intron 1 of 1)	intron (NM_013706, intron 1 of 1)	933.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	44.62	63.59	61.05	7.42	4.2	10.45	129.91	198.09	103.67
Merged-chr4-134273558-1	chr4	134273058	134274058	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13695.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	6.86	4.15	9.25	10.8	7.0	11.25	1.06	3.1	4.37
Merged-chr10-4333561-1	chr10	4333061	4334061	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	53914.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	2.29	6.45	11.1	4.72	3.73	5.63	2.11	5.75	4.37
Merged-chr6-83673652-2	chr6	83673148	83674148	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144943, intron 4 of 5)	MLT1I|LTR|ERVL-MaLR	4209.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	10.87	5.07	11.1	4.05	3.73	16.88	13.73	3.1	6.25
Merged-chr4-149863721-1	chr4	149863221	149864221	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89454.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.0	3.23	9.25	5.4	2.8	0.0	4.22	0.88	1.25
Merged-chr10-96075610-3	chr10	96075116	96076116	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134953.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.0	6.45	1.85	12.82	8.4	4.02	7.39	5.31	1.25
Merged-chr4-40183091-1	chr4	40182591	40183591	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007386, intron 12 of 20)	intron (NM_007386, intron 12 of 20)	39826.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.0	5.07	3.7	2.7	4.67	2.41	5.28	3.1	2.5
Merged-chrX-14628362-1	chrX	14627862	14628862	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	417214.0	NM_001034100	385328.0	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	29.17	34.1	33.3	28.34	26.59	34.56	34.85	28.3	18.74
Merged-chr6-8494608-3	chr6	8494101	8495101	+	865.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14560.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	17.73	11.06	12.95	17.54	20.53	23.31	25.35	25.65	8.74
Merged-chr17-24206025-1	chr17	24205525	24206525	+	865.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173186)	promoter-TSS (NM_173186)	-463.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	36.61	22.58	29.6	28.34	25.66	45.82	42.25	29.63	11.24
Merged-chr12-76377329-2	chr12	76376825	76377825	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	7059.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	34.32	27.19	34.22	40.48	24.72	35.37	90.83	80.47	66.2
Merged-chr2-83705949-1	chr2	83705449	83706449	+	865.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-18448.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	14.87	24.42	16.65	37.11	33.12	42.6	20.07	17.69	15.61
Merged-chr3-158076832-3	chr3	158076340	158077340	+	864.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40158.0	NM_001289524	67144.0	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	8.58	11.06	17.57	10.12	9.33	7.23	11.62	4.42	9.37
Merged-chr11-22780399-3	chr11	22779902	22780902	+	864.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79333.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	17.73	13.36	18.5	23.62	13.06	19.29	13.73	6.19	24.98
Merged-chr15-100060582-3	chr15	100060084	100061084	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	21920.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	73.22	41.47	68.45	56.0	38.25	36.17	48.58	52.18	34.97
Merged-chr14-56813691-3	chr14	56813187	56814187	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152252, exon 1 of 1)	non-coding (NR_152252, exon 1 of 1)	1698.0	NR_152252	100503842.0	Mm.297636	NR_152252	ENSMUSG00000100017	2410022M11Rik	-	RIKEN cDNA 2410022M11 gene	ncRNA	62.93	74.19	45.32	46.56	41.99	55.46	70.76	73.4	44.34
Merged-chr6-52698196-3	chr6	52697735	52698735	+	864.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15494.0	NM_025816	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	29.17	35.02	37.92	25.64	15.86	28.13	38.02	42.01	34.97
Merged-chr2-129539362-2	chr2	129538865	129539865	+	864.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2763.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	44.05	31.33	23.12	11.47	2.8	3.22	25.35	27.41	10.62
Merged-chr9-66882067-3	chr9	66881583	66882583	+	864.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37622.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	117.84	147.91	98.05	170.7	166.08	122.18	135.19	131.32	102.42
Merged-chr6-3182923-3	chr6	3182432	3183432	+	864.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105587.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	10.3	12.44	28.67	14.84	14.0	10.45	2.11	2.21	6.25
Merged-chr4-148045018-3	chr4	148044512	148045512	+	864.8833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027809, intron 4 of 12)	intron (NR_027809, intron 4 of 12)	3823.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	34.9	21.2	28.67	16.19	9.33	32.96	29.57	27.86	21.86
Merged-chr12-111376900-2	chr12	111376455	111377455	+	864.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	763.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	225.39	261.26	263.61	213.89	180.07	208.98	210.18	243.19	154.88
Merged-chr9-104233989-3	chr9	104233485	104234485	+	864.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 5 of 56)	intron (NM_001359740, intron 5 of 56)	28945.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	82.38	123.49	56.42	140.34	108.23	97.26	240.81	251.59	77.44
Merged-chr12-112870943-2	chr12	112870429	112871429	+	864.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10013.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	5.15	0.46	0.0	8.1	8.4	4.82	5.28	4.42	5.62
Merged-chr14-93650251-2	chr14	93649762	93650762	+	864.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	240407.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	6.29	3.69	7.4	8.77	5.6	16.88	6.34	16.36	7.49
Merged-chr16-57558394-3	chr16	57557889	57558889	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	9147.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	78.94	88.93	46.25	81.64	71.38	56.27	81.33	74.73	44.34
Merged-chr16-91852992-3	chr16	91852493	91853493	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	L2b|LINE|L2	78637.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	87.52	79.25	96.2	107.28	89.57	131.82	95.06	84.9	64.33
Merged-chr7-79846751-3	chr7	79846264	79847264	+	864.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008486, intron 1 of 20)	intron (NM_008486, intron 1 of 20)	1446.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	14.87	9.22	14.8	15.52	4.2	9.65	17.96	8.84	1.87
Merged-chr2-60217779-1	chr2	60217279	60218279	+	864.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	7843.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	24.6	8.75	4.62	14.17	6.53	6.43	5.28	10.61	6.87
Merged-chrX-12078795-3	chrX	12078286	12079286	+	864.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	1767.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	53.2	34.1	37.0	33.06	29.39	38.58	34.85	29.63	26.85
Merged-chr2-145881249-3	chr2	145880764	145881764	+	864.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 11 of 12)	intron (NM_028724, intron 11 of 12)	-21977.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	20.02	16.13	18.5	26.99	15.39	18.49	27.46	15.48	14.99
Merged-chr14-48121318-1	chr14	48120818	48121818	+	864.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	CpG	449.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	10.87	8.29	12.95	26.99	20.99	31.35	9.51	0.88	3.75
Merged-chr6-70709574-1	chr6	70709074	70710074	+	864.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82601.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.58	3.69	1.85	8.1	3.73	4.82	3.17	4.42	3.75
Merged-chr5-64296581-3	chr5	64296090	64297090	+	864.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	intron (NM_001289514, intron 11 of 18)	66233.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	61.21	29.95	45.32	60.72	36.39	27.33	47.53	42.45	38.1
Merged-chr11-101553788-3	chr11	101553286	101554286	+	864.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008676, intron 1 of 23)	intron (NM_008676, intron 1 of 23)	1132.0	NM_001252223	17966.0	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	203.08	213.34	70.3	206.46	202.46	87.61	144.7	206.49	93.05
Merged-chr9-119103119-3	chr9	119102632	119103632	+	864.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177117, intron 1 of 36)	intron (NM_177117, intron 1 of 36)	654.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	22.88	21.66	19.42	28.34	21.93	39.39	41.19	39.8	16.86
Merged-chr2-150218034-3	chr2	150217557	150218557	+	864.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142411)	promoter-TSS (NM_001142411)	-42.0	NM_001142411	245174.0	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	5.72	8.75	7.4	10.8	5.6	10.45	8.45	6.19	2.5
Merged-chr1-72412875-2	chr1	72412363	72413363	+	864.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105442.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	15.45	22.58	7.4	27.66	24.26	3.22	57.03	47.31	19.36
Merged-chr5-99213958-2	chr5	99213439	99214439	+	864.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38988.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	96.68	81.1	46.25	69.5	55.05	61.09	66.54	55.27	23.73
Merged-chr5-111035668-3	chr5	111035180	111036180	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	31536.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	25.17	17.05	9.25	12.14	13.53	13.66	8.45	7.07	9.37
Merged-chr14-57417357-3	chr14	57416871	57417871	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-6700.0	NM_009376	21821.0	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	16.02	5.99	7.4	10.12	5.13	19.29	11.62	7.52	7.49
Merged-chr1-190927923-3	chr1	190927418	190928418	+	864.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357131)	promoter-TSS (NM_001357131)	-572.0	NM_001357132	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	158.46	170.03	90.65	203.76	261.71	177.64	205.96	215.78	84.94
Merged-chr2-145861778-1	chr2	145861278	145862278	+	864.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-41463.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	32.61	26.26	24.05	51.95	29.86	37.78	48.58	25.2	24.36
Merged-chr4-126017902-3	chr4	126017455	126018455	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6704.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	49.2	42.85	41.62	56.0	51.78	51.44	59.15	37.14	22.48
Merged-chr10-119050484-3	chr10	119049987	119050987	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152787)	promoter-TSS (NR_152787)	12.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	16.59	10.14	1.85	39.13	24.26	17.68	21.12	11.5	17.49
Merged-chr11-58636767-3	chr11	58636279	58637279	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3686.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	9.72	6.45	9.25	29.01	26.12	23.31	7.39	8.84	9.99
Merged-chr13-100600540-3	chr13	100600045	100601045	+	864.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178410, exon 4 of 6)	exon (NM_178410, exon 4 of 6)	16399.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	12.01	16.13	16.65	105.93	130.16	68.32	71.82	115.41	53.71
Merged-chr4-99937462-2	chr4	99936966	99937966	+	864.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	8015.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	24.6	16.13	20.35	29.69	16.79	28.13	15.84	17.69	27.48
Merged-chr5-115514914-2	chr5	115514409	115515409	+	864.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8233.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	127.57	117.5	116.54	191.62	137.15	153.52	140.47	119.83	104.92
Merged-chr1-132390848-1	chr1	132390348	132391348	+	864.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-530.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	6.29	3.69	0.92	15.52	8.4	4.82	4.22	4.42	6.87
Merged-chr11-86836557-2	chr11	86836064	86837064	+	864.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28904.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	6.86	2.3	0.0	12.82	10.73	16.08	14.79	4.42	14.99
Merged-chr13-54818970-3	chr13	54818447	54819447	+	864.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29542.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	68.65	41.93	30.52	49.93	17.73	57.07	55.98	58.37	29.35
Merged-chr1-186508577-2	chr1	186508079	186509079	+	864.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50102.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	9.72	3.69	11.1	11.47	5.13	6.43	5.28	3.98	3.75
Merged-chr13-42150111-3	chr13	42149642	42150642	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	98121.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	8.58	5.07	1.85	8.1	6.06	9.65	1.06	0.88	1.25
Merged-chr15-99702485-3	chr15	99701990	99702990	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031842, exon 1 of 13)	exon (NM_031842, exon 1 of 13)	203.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	80.09	58.98	68.45	82.99	66.24	83.59	84.49	67.21	46.22
Merged-chr2-165317565-3	chr2	165317069	165318069	+	864.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	-1218.0	NM_001302754	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	233.97	240.07	135.97	296.2	280.84	228.28	240.81	285.2	99.92
Merged-chr10-67003439-4	chr10	67002964	67003964	+	864.5416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1611.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	80.66	47.92	33.3	89.06	78.84	80.38	77.1	75.17	24.36
Merged-chr4-102646467-2	chr4	102645983	102646983	+	864.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56640.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	29.75	37.78	29.6	45.88	29.39	28.94	47.53	46.87	38.72
Merged-chr7-19235268-3	chr7	19234753	19235753	+	864.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207525, intron 1 of 1)	ID_B1|SINE|B4	6864.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	13.16	17.97	20.35	10.8	8.86	19.29	28.52	19.9	8.74
Merged-chr5-43113591-3	chr5	43113085	43114085	+	864.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119878.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	18.31	25.34	12.95	25.64	26.59	14.47	30.63	23.43	13.12
Merged-chr5-31880626-3	chr5	31880125	31881125	+	864.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	MTD|LTR|ERVL-MaLR	182575.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	35.47	35.02	37.92	31.71	20.99	30.54	23.24	16.8	25.61
Merged-chr10-20054085-2	chr10	20053594	20054594	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 8 of 29)	intron (NM_008580, intron 8 of 29)	-94826.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	25.74	27.19	7.4	51.28	40.12	32.15	52.81	40.68	12.49
Merged-chr5-18009350-3	chr5	18008834	18009834	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	46764.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	17.16	14.28	9.25	24.96	18.19	9.65	33.8	32.28	18.11
Merged-chr10-69247537-3	chr10	69247037	69248037	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	34343.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	52.63	57.14	69.37	36.43	25.19	36.97	38.02	36.26	49.96
Merged-chr5-74672914-1	chr5	74672414	74673414	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159578, intron 1 of 12)	AmnSINE2|SINE|Deu	4958.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	3.43	1.38	1.85	8.1	8.86	11.25	1.06	0.0	3.75
Merged-chr9-40320211-2	chr9	40319704	40320704	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151734, intron 3 of 18)	intron (NR_151734, intron 3 of 18)	1119.0	NM_001357622	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	149.88	144.23	92.5	132.92	106.83	63.5	45.42	47.75	23.73
Merged-chr5-90747343-3	chr5	90746856	90747856	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11942.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	15.45	12.44	11.1	6.07	3.73	20.9	6.34	2.65	11.24
Merged-chr12-4840262-3	chr12	4839756	4840756	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	1339.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	10.3	17.05	13.87	20.92	14.0	18.49	19.01	17.69	16.86
Merged-chr11-50915812-2	chr11	50915307	50916307	+	864.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294323, intron 1 of 5)	CpG	369.0	NM_178447	22678.0	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	21.74	21.2	19.42	43.18	46.18	30.54	30.63	15.92	18.74
Merged-chr18-64847094-2	chr18	64846594	64847594	+	864.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40662.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.29	3.69	1.85	4.05	6.06	9.65	6.34	7.96	6.87
Merged-chr15-95810647-3	chr15	95810144	95811144	+	864.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	19428.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	50.91	47.46	15.72	55.33	33.59	35.37	24.29	44.66	13.12
Merged-chr8-41376177-3	chr8	41375686	41376686	+	864.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1489.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	22.88	17.51	37.92	31.04	21.46	28.13	76.05	76.94	63.7
Merged-chr4-6427579-3	chr4	6427086	6428086	+	864.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 10 of 30)	intron (NM_010945, intron 10 of 30)	26685.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	4.58	2.76	0.0	6.07	2.8	4.82	6.34	3.98	2.5
Merged-chr1-135267739-3	chr1	135267234	135268234	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 5 of 9)	intron (NM_001159624, intron 5 of 9)	-9262.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	60.07	31.79	34.22	27.66	28.46	24.92	52.81	30.07	27.48
Merged-chr3-84313223-3	chr3	84312713	84313713	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-8438.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	2.29	2.76	3.7	3.37	3.27	1.61	5.28	3.98	1.25
Merged-chr5-52742282-3	chr5	52741785	52742785	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	711.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	68.65	77.87	61.97	66.8	85.84	60.28	66.54	45.99	28.73
Merged-chr2-84831842-3	chr2	84831355	84832355	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4834.0	NM_013899	30059.0	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	2.29	5.53	0.0	4.05	0.93	1.61	3.17	1.33	1.25
Merged-chr2-71002660-3	chr2	71002176	71003176	+	864.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 2 of 9)	intron (NM_145524, intron 2 of 9)	15698.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	5.72	6.45	6.47	5.4	7.93	6.43	14.79	8.4	3.75
Merged-chr10-93256894-3	chr10	93256408	93257408	+	864.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	54251.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	32.61	30.87	40.7	43.86	30.79	44.21	42.25	23.88	12.49
Merged-chr15-96475632-2	chr15	96475144	96476144	+	864.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14801.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	12.01	10.14	7.4	23.62	17.73	20.09	9.51	17.24	11.87
Merged-chr10-88390614-3	chr10	88390113	88391113	+	864.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	11201.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	35.47	28.11	16.65	25.64	24.72	17.68	39.08	30.95	18.11
Merged-chr11-20732497-2	chr11	20731992	20732992	+	864.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	L1MD2|LINE|L1	9064.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	16.02	19.81	24.05	22.27	21.46	17.68	8.45	3.54	5.62
Merged-chr11-63923654-3	chr11	63923159	63924159	+	864.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1375.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	9.15	8.75	7.4	10.12	2.8	0.8	16.9	8.84	16.24
Merged-chr15-73135154-3	chr15	73134651	73135651	+	864.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	ORR1B1|LTR|ERVL-MaLR	44739.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	18.31	12.9	16.65	9.45	12.13	12.06	15.84	14.59	29.35
Merged-chr2-170119423-3	chr2	170118939	170119939	+	864.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159683, exon 3 of 7)	exon (NM_001159683, exon 3 of 7)	11781.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	25.17	29.49	42.55	14.84	22.39	26.53	21.12	24.32	33.1
Merged-chr4-133182841-2	chr4	133182341	133183341	+	864.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	B1F2|SINE|Alu	-12814.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	46.91	44.24	32.37	87.71	54.11	57.87	34.85	30.95	15.61
Merged-chr16-11843642-3	chr16	11843147	11844147	+	864.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-57717.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	4.58	2.3	7.4	4.72	1.87	3.22	7.39	2.21	12.49
Merged-chr1-20940251-2	chr1	20939762	20940762	+	864.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028829)	TTS (NM_028829)	-11364.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	21.74	16.13	7.4	26.99	16.79	17.68	2.11	1.33	1.25
Merged-chr10-63023263-2	chr10	63022733	63023733	+	864.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079824, intron 1 of 9)	CpG	616.0	NM_001079824	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	147.02	161.27	209.96	116.73	125.02	135.04	180.61	145.03	109.29
Merged-chr4-45546081-2	chr4	45545571	45546571	+	864.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-15243.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.15	4.15	9.25	4.72	4.67	8.84	7.39	4.42	3.75
Merged-chr1-92975297-1	chr1	92974797	92975797	+	864.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-50.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	30.32	33.18	44.4	37.11	16.79	37.78	53.87	36.7	31.23
Merged-chr15-99116557-3	chr15	99116070	99117070	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10275.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	17.73	20.74	19.42	74.22	55.98	69.13	48.58	47.31	24.98
Merged-chr19-5636735-3	chr19	5636235	5637235	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009045)	promoter-TSS (NM_009045)	-755.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	483.39	513.77	336.68	443.96	435.72	299.01	340.09	568.18	208.59
Merged-chr17-87531775-3	chr17	87531348	87532348	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84913.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	12.59	10.6	3.7	18.89	25.66	16.08	25.35	23.43	14.99
Merged-chr6-59174153-3	chr6	59173642	59174642	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-34728.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	12.01	6.91	0.0	3.37	2.33	7.23	1.06	4.86	2.5
Merged-chr13-37056895-3	chr13	37056399	37057399	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6655.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.57	3.69	0.0	11.47	6.06	4.82	6.34	0.44	5.0
Merged-chr3-108226650-3	chr3	108226159	108227159	+	864.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-60.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	6.86	6.45	1.85	13.49	2.33	1.61	4.22	3.98	7.49
Merged-chr18-6137684-3	chr18	6137196	6138196	+	864.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1598.0	NM_001039692	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	35.47	62.21	42.55	38.46	40.12	55.46	36.97	55.71	29.35
Merged-chrX-169319299-3	chrX	169318805	169319805	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008222, intron 2 of 6)	URR1A|DNA|hAT-Charlie	1067.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	39.47	33.64	17.57	64.77	26.12	5.63	40.14	28.3	14.99
Merged-chr11-103374762-3	chr11	103374248	103375248	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	intron (NM_183034, intron 7 of 11)	-11056.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	69.79	64.51	68.45	128.87	99.83	61.09	84.49	79.59	59.95
Merged-chr13-113918229-3	chr13	113917732	113918732	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	123724.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	139.58	168.65	40.7	120.77	164.68	96.45	162.65	210.91	84.31
Merged-chr8-69193499-3	chr8	69193020	69194020	+	864.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15526.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	16.02	19.35	26.82	23.62	29.39	32.96	55.98	38.47	46.22
Merged-chr2-92004907-1	chr2	92004407	92005407	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	Charlie9|DNA|hAT-Charlie	19263.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	4.0	1.38	0.0	7.42	5.13	3.22	1.06	1.33	1.87
Merged-chr4-11077103-2	chr4	11076597	11077597	+	864.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085493)	promoter-TSS (NM_001085493)	-892.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	10.3	12.44	9.25	4.72	6.06	6.43	4.22	2.65	5.0
Merged-chr15-40949413-2	chr15	40948892	40949892	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	(TTC)n|Simple_repeat|Simple_repeat	-224309.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	13.73	10.14	0.0	14.17	5.13	21.7	12.67	6.19	18.74
Merged-chrX-42058038-2	chrX	42057524	42058524	+	864.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-9812.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	4.58	10.14	13.87	10.12	10.26	11.25	4.22	4.86	6.87
Merged-chr11-109650446-3	chr11	109649937	109650937	+	864.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021880)	promoter-TSS (NM_021880)	-484.0	NM_021880	19084.0	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	81.8	69.58	46.25	72.19	46.18	55.46	67.6	44.66	42.47
Merged-chr1-192536653-3	chr1	192536139	192537139	+	864.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	234580.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	25.17	30.41	12.95	66.12	55.05	19.29	26.4	25.2	9.99
Merged-chr13-73467958-1	chr13	73467458	73468458	+	864.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	575.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	36.04	27.19	18.5	29.69	14.46	7.23	32.74	19.9	8.74
Merged-chr11-11903623-3	chr11	11903135	11904135	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-5491.0	NM_001190448	13195.0	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	9.72	10.14	3.7	3.37	7.0	4.82	16.9	13.71	9.99
Merged-chr19-12011071-3	chr19	12010559	12011559	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25681.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	216.81	167.73	95.27	161.93	133.89	126.19	204.9	218.87	73.69
Merged-chr4-117218696-3	chr4	117218199	117219199	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145637, intron 7 of 12)	intron (NM_001145637, intron 7 of 12)	33218.0	NM_001145637	381544.0	Mm.23504	NM_001033774	ENSMUSG00000060268	Armh1	1700012C08Rik|Gm1661|Gm1662|Ncrna00082	armadillo-like helical domain containing 1	protein-coding	21.17	17.51	30.52	45.88	27.06	59.48	15.84	24.76	15.61
Merged-chr9-37257752-3	chr9	37257252	37258252	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2014.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	10.87	2.3	5.55	5.4	9.33	6.43	6.34	4.42	4.37
Merged-chr7-112240931-2	chr7	112240427	112241427	+	864.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	15091.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	5.15	3.23	14.8	0.67	2.8	8.04	0.0	0.44	1.25
Merged-chr2-102290229-3	chr2	102289721	102290721	+	864.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103761.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.43	2.3	0.0	1.35	3.27	3.22	4.22	2.21	2.5
Merged-chr5-129914213-3	chr5	129913723	129914723	+	864.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359308)	TTS (NM_001359308)	5683.0	NM_026916	69034.0	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	4.58	2.76	6.47	4.05	2.33	0.0	3.17	0.88	5.0
Merged-chr2-68862135-3	chr2	68861645	68862645	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	CpG	704.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	82.38	78.33	111.92	84.34	85.84	94.85	106.67	95.95	70.57
Merged-chr17-8149591-3	chr17	8149096	8150096	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-1764.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	8.01	12.9	8.32	7.42	2.33	12.86	16.9	14.15	6.25
Merged-chr16-24433625-3	chr16	24433125	24434125	+	864.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-14466.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	47.48	42.85	8.32	72.87	44.32	40.99	27.46	13.71	10.62
Merged-chr16-23104094-3	chr16	23103600	23104600	+	864.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3368.0	NR_152586	13682.0	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	29.17	23.04	21.27	15.52	10.73	39.39	31.69	38.47	31.85
Merged-chr9-24499686-3	chr9	24499134	24500134	+	864.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359948, intron 1 of 22)	intron (NM_001359948, intron 1 of 22)	3506.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	20.02	27.19	34.22	23.62	20.53	27.33	22.18	10.61	17.49
Merged-chr8-57587540-3	chr8	57587035	57588035	+	864.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-64218.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	6.29	9.22	9.25	9.45	7.0	13.66	7.39	9.29	5.0
Merged-chr12-4197196-3	chr12	4196690	4197690	+	864.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 7 of 21)	MTD|LTR|ERVL-MaLR	36775.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	51.48	62.67	41.62	78.27	81.17	98.87	43.3	42.89	37.47
Merged-chr5-99297746-2	chr5	99297243	99298243	+	864.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030692, exon 4 of 4)	non-coding (NR_030692, exon 4 of 4)	-44816.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	69.22	64.51	62.9	95.14	69.98	61.09	104.56	89.32	44.97
Merged-chr7-143180928-3	chr7	143180401	143181401	+	864.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	73647.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	8.58	1.38	3.7	0.67	1.4	3.22	3.17	2.65	1.25
Merged-chr16-84836228-3	chr16	84835715	84836715	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016755)	promoter-TSS (NM_016755)	-590.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	54.92	34.56	32.37	33.74	26.12	49.83	53.87	36.26	22.48
Merged-chr9-71162360-1	chr9	71161860	71162860	+	864.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271843, exon 1 of 6)	exon (NM_001271843, exon 1 of 6)	273.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	18.31	9.22	2.77	7.42	7.0	1.61	13.73	8.4	9.99
Merged-chr8-27086603-1	chr8	27086103	27087103	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	762.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	4.0	3.23	1.85	3.37	1.87	6.43	2.11	0.88	1.25
Merged-chr6-58930137-1	chr6	58929637	58930637	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23011.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.57	1.38	0.0	2.02	4.2	3.22	3.17	2.21	2.5
Merged-chr17-33968688-3	chr17	33968190	33969190	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10101.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	17.73	5.99	12.95	5.4	5.6	10.45	14.79	11.5	11.87
Merged-chr2-167230333-1	chr2	167229833	167230833	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	L1MB5|LINE|L1	10204.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	12.01	17.97	4.62	24.96	23.33	23.31	23.24	19.46	13.12
Merged-chrX-142537301-1	chrX	142536801	142537801	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143046.0	NM_001358725	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	41.76	48.84	45.32	42.51	25.66	32.15	28.52	22.99	38.1
Merged-chr13-43791469-2	chr13	43790957	43791957	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	6345.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	75.51	39.63	22.2	82.32	37.79	58.68	85.55	46.87	25.61
Merged-chr6-24963957-1	chr6	24963457	24964457	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7832.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	47.48	51.15	35.15	33.74	35.45	44.21	92.94	73.84	36.85
Merged-chr16-17276742-1	chr16	17276242	17277242	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177473, exon 2 of 10)	exon (NM_177473, exon 2 of 10)	442.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	9.72	10.14	7.4	32.39	25.19	9.65	8.45	8.84	5.0
Merged-chr12-80846495-2	chr12	80846011	80847011	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178682, intron 2 of 5)	intron (NM_178682, intron 2 of 5)	55979.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	124.14	117.96	78.62	96.48	63.45	70.73	171.1	214.45	70.57
Merged-chr15-86183641-1	chr15	86183141	86184141	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-2087.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	90.96	82.94	49.95	99.86	115.69	135.04	108.79	102.14	64.33
Merged-chr2-165858297-1	chr2	165857797	165858797	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252585)	promoter-TSS (NM_001252585)	-124.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	333.51	294.44	270.09	299.57	247.25	265.25	280.95	336.49	189.23
Merged-chr2-66170538-1	chr2	66170038	66171038	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45745.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	12.59	8.29	11.1	6.07	10.26	4.82	9.51	3.98	4.37
Merged-chr9-61967429-1	chr9	61966929	61967929	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 5 of 7)	intron (NM_028748, intron 5 of 7)	-20630.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	17.16	7.83	6.47	11.47	10.73	19.29	9.51	5.75	13.74
Merged-chr13-95842160-2	chr13	95841651	95842651	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	49771.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	11.44	10.6	11.1	9.45	6.53	8.04	6.34	4.86	3.75
Merged-chr7-75571227-1	chr7	75570727	75571727	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 3 of 36)	intron (NM_029332, intron 3 of 36)	115693.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	9.72	15.67	9.25	20.24	17.26	20.09	7.39	1.77	9.99
Merged-chrX-99488256-1	chrX	99487756	99488756	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17521.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	9.15	6.91	15.72	8.77	1.4	7.23	3.17	4.42	2.5
Merged-chr2-165985583-3	chr2	165985049	165986049	+	864.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-7088.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	60.64	47.92	50.87	63.42	37.79	75.56	67.6	68.09	62.45
Merged-chr9-47529814-1	chr9	47529314	47530314	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310841)	promoter-TSS (NM_001310841)	-356.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	84.66	88.93	61.05	87.71	52.25	79.58	78.16	81.8	60.58
Merged-chr3-87223841-1	chr3	87223341	87224341	+	864.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	39683.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.29	2.3	1.85	0.67	0.93	3.22	7.39	6.19	3.75
Merged-chr10-43910842-1	chr10	43910342	43911342	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130892, exon 4 of 9)	exon (NM_130892, exon 4 of 9)	9035.0	NM_130892	170728.0	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	23.45	18.43	20.35	20.24	20.06	37.78	13.73	17.24	16.86
Merged-chr10-56428007-1	chr10	56427507	56428507	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3974.0	NR_152769	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	2.86	5.99	3.7	2.02	6.06	0.0	5.28	3.1	2.5
Merged-chr10-50705111-1	chr10	50704611	50705611	+	864.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 16 of 41)	intron (NM_198007, intron 16 of 41)	112442.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	17.16	10.6	9.25	7.42	10.26	19.29	11.62	4.86	13.74
Merged-chr14-57772633-3	chr14	57772139	57773139	+	863.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3d|LINE|L1	-25550.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	5.15	4.15	0.0	8.1	5.6	7.23	7.39	9.73	7.49
Merged-chr12-116485744-3	chr12	116485251	116486251	+	863.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011215)	promoter-TSS (NM_011215)	31.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	2.86	1.84	1.85	1.35	0.47	4.82	3.17	3.1	4.37
Merged-chr5-89852974-3	chr5	89852502	89853502	+	863.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	30332.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	5.15	0.0	0.0	4.72	3.73	0.8	3.17	4.42	7.49
Merged-chr1-153518791-3	chr1	153518266	153519266	+	863.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 7 of 11)	B3|SINE|B2	30948.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	18.88	24.42	16.65	37.78	23.33	15.27	24.29	15.92	11.24
Merged-chr13-82073571-3	chr13	82073071	82074071	+	863.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	290324.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.15	8.29	3.7	8.77	7.0	1.61	25.35	19.9	8.12
Merged-chr16-30604260-2	chr16	30603752	30604752	+	863.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4529.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	37.76	28.11	33.3	45.88	24.72	40.19	39.08	29.63	25.61
Merged-chr1-146967663-3	chr1	146967157	146968157	+	863.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	469970.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	16.02	22.12	11.1	15.52	18.19	24.11	20.07	15.03	19.98
Merged-chr12-80107378-2	chr12	80106879	80107879	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007564)	TTS (NM_007564)	5634.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	7.44	7.83	4.62	10.12	5.6	8.84	9.51	3.1	8.74
Merged-chr11-118465263-2	chr11	118464760	118465760	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10265.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	31.46	52.53	50.87	63.42	41.99	81.99	48.58	44.22	40.59
Merged-chr7-126796600-2	chr7	126796102	126797102	+	863.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177308, exon 5 of 9)	exon (NM_001177308, exon 5 of 9)	2576.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	17.16	16.59	10.17	6.75	7.93	16.08	11.62	7.07	16.24
Merged-chr7-97780986-2	chr7	97780468	97781468	+	863.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7573.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	13.16	11.52	27.75	12.82	7.93	12.06	24.29	34.05	25.61
Merged-chr14-76959054-1	chr14	76958554	76959554	+	863.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77563.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	2.29	1.38	1.85	7.42	7.46	3.22	1.06	0.88	1.25
Merged-chr15-64113350-3	chr15	64112851	64113851	+	863.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010026, intron 25 of 30)	intron (NM_010026, intron 25 of 30)	-52903.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	9.15	5.53	2.77	4.72	4.67	2.41	3.17	7.52	5.0
Merged-chr1-135740455-3	chr1	135739947	135740947	+	863.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153810, intron 2 of 3)	(CAAAC)n|Simple_repeat|Simple_repeat	11280.0	NM_007791	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	29.17	33.18	30.52	10.8	4.2	7.23	46.47	62.79	31.23
Merged-chr11-8787824-3	chr11	8787316	8788316	+	863.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123281.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	9.72	10.6	5.55	5.4	3.73	7.23	3.17	3.1	2.5
Merged-chr4-135972637-3	chr4	135972131	135973131	+	863.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-37.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	82.95	75.11	64.75	90.41	87.7	68.32	104.56	92.41	54.96
Merged-chr4-6225473-2	chr4	6224960	6225960	+	863.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34355.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.43	2.76	3.7	8.77	8.4	6.43	11.62	9.73	3.75
Merged-chr3-20199135-2	chr3	20198646	20199646	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23213.0	NR_105974	102465609.0		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	1.14	2.76	0.0	4.72	2.8	4.82	1.06	0.88	0.0
Merged-chr14-118820225-1	chr14	118819725	118820725	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	32354.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	5.15	2.3	3.7	1.35	1.87	3.22	2.11	0.44	1.25
Merged-chr11-103003405-3	chr11	103002911	103003911	+	863.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	-3490.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	17.73	18.43	32.37	27.66	25.66	35.37	8.45	11.05	8.74
Merged-chr17-64873926-1	chr17	64873426	64874426	+	863.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37855.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	6.86	2.3	3.7	6.07	3.73	0.0	2.11	0.44	3.75
Merged-chr19-5729393-5	chr19	5728907	5729907	+	863.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020491)	TTS (NM_020491)	259.0	NM_181452	17826.0	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	56.63	58.52	111.92	42.51	35.45	77.97	46.47	46.87	40.59
Merged-chr7-142462739-3	chr7	142462231	142463231	+	863.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136071, intron 1 of 10)	intron (NM_001136071, intron 1 of 10)	1919.0	NM_001136071	16985.0	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	2.29	5.99	5.55	3.37	2.8	6.43	6.34	2.21	8.12
Merged-chr11-34008681-5	chr11	34008183	34009183	+	863.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-15490.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	136.72	126.72	80.47	127.52	90.04	148.7	126.74	124.69	87.43
Merged-chr8-57433005-3	chr8	57432513	57433513	+	863.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22910.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	1.14	5.53	3.7	4.72	5.6	3.22	1.06	2.21	8.12
Merged-chr1-127219342-3	chr1	127218844	127219844	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	MIRc|SINE|MIR	14358.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	37.18	31.79	24.05	42.51	48.98	21.7	62.31	93.74	44.97
Merged-chr9-3000428-2	chr9	2999911	3000911	+	863.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	38332.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	120.13	535.89	296.91	114.03	567.27	315.09	316.86	245.84	355.36
Merged-chr7-4654690-3	chr7	4654195	4655195	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	4255.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	175.05	209.2	164.64	122.12	101.23	91.63	177.44	194.11	118.04
Merged-chr4-145215523-3	chr4	145215027	145216027	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011610, exon 10 of 10)	3' UTR (NM_011610, exon 10 of 10)	-20522.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	30.32	46.54	47.17	45.88	25.66	49.03	47.53	38.03	33.72
Merged-chr12-8359561-1	chr12	8359061	8360061	+	863.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	46128.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	3.43	4.61	9.25	3.37	4.2	8.84	21.12	19.9	16.24
Merged-chr13-24797798-3	chr13	24797284	24798284	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3873.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	18.31	36.4	55.5	31.04	21.93	63.5	63.37	60.13	44.34
Merged-chr8-86893816-1	chr8	86893316	86894316	+	863.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8558.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.29	7.83	6.47	2.7	3.27	5.63	6.34	1.33	6.25
Merged-chr13-41263790-3	chr13	41263289	41264289	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13945.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	45.76	41.47	44.4	54.65	31.26	57.07	53.87	29.63	50.59
Merged-chr5-122732639-3	chr5	122732128	122733128	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	25084.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	63.5	44.7	20.35	146.41	58.78	48.23	42.25	48.2	13.74
Merged-chr9-55170956-3	chr9	55170473	55171473	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346658, intron 3 of 12)	intron (NM_001346658, intron 3 of 12)	20890.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	16.59	25.8	13.87	20.92	17.73	31.35	15.84	12.38	9.37
Merged-chr7-141392977-3	chr7	141392448	141393448	+	863.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011528, intron 1 of 7)	intron (NM_011528, intron 1 of 7)	788.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	130.43	192.61	136.89	176.78	285.5	212.2	161.6	220.64	131.15
Merged-chr18-82765413-3	chr18	82764892	82765892	+	863.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6353.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	24.6	19.81	3.7	26.99	25.19	10.45	15.84	13.27	5.0
Merged-chr1-45894390-2	chr1	45893900	45894900	+	863.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31194.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	29.17	34.56	27.75	24.29	18.19	40.99	19.01	13.71	11.24
Merged-chr18-66471308-5	chr18	66470802	66471802	+	863.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	12698.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	49.2	49.3	12.95	104.58	79.31	87.61	84.49	68.09	39.35
Merged-chr12-98260184-2	chr12	98259750	98260750	+	863.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008079)	promoter-TSS (NM_008079)	-791.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	82.38	118.88	61.05	75.57	95.63	65.11	84.49	111.87	56.83
Merged-chr16-50299212-3	chr16	50298717	50299717	+	863.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	133172.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	40.04	44.24	37.92	22.94	21.46	22.51	17.96	30.95	28.1
Merged-chr2-160058342-2	chr2	160057845	160058845	+	863.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	41692.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	79.52	63.59	23.12	70.85	44.32	57.87	52.81	48.2	31.23
Merged-chr11-97994836-5	chr11	97994259	97995259	+	863.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207231, intron 2 of 5)	intron (NM_207231, intron 2 of 5)	1414.0	NM_207231	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	35.47	37.78	39.77	31.71	19.13	20.9	49.64	32.28	18.74
Merged-chr14-62844029-3	chr14	62843568	62844568	+	863.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	6347.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	72.08	93.54	73.07	91.76	61.11	77.16	73.93	64.11	53.71
Merged-chr17-46520798-3	chr17	46520320	46521320	+	863.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081335, exon 23 of 41)	exon (NM_001081335, exon 23 of 41)	24031.0	NM_207161	381101.0	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	32.61	19.81	25.9	39.13	30.32	39.39	26.4	18.57	23.11
Merged-chr3-54358779-5	chr3	54358309	54359309	+	863.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2298.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	74.94	76.95	60.12	50.6	48.52	57.87	78.16	91.97	34.97
Merged-chr13-51844868-3	chr13	51844379	51845379	+	863.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1796.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	39.47	17.97	33.3	48.58	14.0	40.19	59.15	28.74	14.36
Merged-chr3-122566241-3	chr3	122565753	122566753	+	863.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 5 of 15)	HAL1|LINE|L1	-24572.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	22.31	21.66	14.8	25.64	24.72	13.66	22.18	28.3	24.98
Merged-chr4-119004414-2	chr4	119003915	119004915	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42448.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	8.58	6.45	10.17	4.72	2.33	8.04	17.96	8.84	3.75
Merged-chr1-89940587-3	chr1	89940077	89941077	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	2.29	4.15	0.0	3.37	4.67	4.82	2.11	2.21	2.5
Merged-chr15-50779162-1	chr15	50778662	50779662	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	109887.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.01	12.9	9.25	20.24	14.0	16.88	27.46	15.92	12.49
Merged-chr4-126467895-3	chr4	126467401	126468401	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153403, intron 1 of 18)	intron (NM_153403, intron 1 of 18)	682.0	NM_001317174	236511.0	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	23.45	18.43	12.02	31.04	13.06	24.11	31.69	23.88	19.98
Merged-chr3-121766206-1	chr3	121765706	121766706	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42669.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	2.29	2.76	9.25	4.05	3.27	5.63	4.22	0.88	6.25
Merged-chr15-58344790-2	chr15	58344339	58345339	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-20670.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	57.21	62.67	63.82	37.78	37.32	34.56	47.53	57.48	46.84
Merged-chr18-12188810-3	chr18	12188306	12189306	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008720)	TTS (NM_008720)	20076.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	16.02	19.35	3.7	12.14	11.2	38.58	13.73	16.8	12.49
Merged-chr2-151969624-1	chr2	151969124	151970124	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001289151, exon 2 of 2)	3' UTR (NM_001289151, exon 2 of 2)	-2007.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	14.87	16.59	30.52	7.42	10.73	18.49	11.62	10.17	13.74
Merged-chr13-30786294-1	chr13	30785794	30786794	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37061.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	7.44	3.23	1.85	10.12	7.93	5.63	3.17	1.33	1.25
Merged-chr15-59800456-1	chr15	59799956	59800956	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-5497.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	2.29	1.38	0.0	4.72	3.73	2.41	3.17	1.77	1.25
Merged-chr7-49601346-1	chr7	49600846	49601846	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 36 of 37)	intron (NM_175272, intron 36 of 37)	35489.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	5.15	1.84	2.77	2.7	2.8	4.02	1.06	5.75	6.25
Merged-chr11-31732481-2	chr11	31731998	31732998	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60636.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	165.32	139.62	93.42	16.19	15.86	2.41	217.57	221.97	99.3
Merged-chr16-89707670-3	chr16	89707169	89708169	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110683.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	17.16	4.61	11.1	6.07	6.06	12.86	12.67	4.86	11.24
Merged-chr3-95509025-1	chr3	95508525	95509525	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007802, exon 8 of 8)	3' UTR (NM_007802, exon 8 of 8)	9815.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	20.02	12.44	18.5	32.39	27.06	22.51	17.96	15.92	14.99
Merged-chr10-122722238-2	chr10	122721679	122722679	+	863.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	MLT1B|LTR|ERVL-MaLR	42864.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.15	8.75	11.1	16.87	11.66	12.86	20.07	10.61	8.12
Merged-chr10-128092230-2	chr10	128091719	128092719	+	863.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054078)	promoter-TSS (NM_054078)	-564.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	175.05	135.01	190.54	119.43	90.97	120.57	161.6	200.74	133.02
Merged-chr19-26605956-3	chr19	26605513	26606513	+	863.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	CpG	853.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	50.34	58.98	60.12	50.6	27.52	31.35	36.97	37.14	35.6
Merged-chr7-107597756-3	chr7	107597276	107598276	+	863.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	2725.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	46.34	66.81	43.47	34.41	46.65	55.46	47.53	42.89	51.21
Merged-chr19-55710008-3	chr19	55709516	55710516	+	863.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7812.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.73	6.45	8.32	16.87	14.46	7.23	11.62	10.61	9.99
Merged-chr2-8660710-2	chr2	8660221	8661221	+	863.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-528794.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	4.0	7.37	9.25	5.4	7.93	15.27	10.56	12.82	5.62
Merged-chr18-33720415-2	chr18	33719902	33720902	+	863.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-74490.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	8.58	11.52	3.7	0.67	0.47	6.43	10.56	5.75	8.74
Merged-chr11-89025734-3	chr11	89025233	89026233	+	863.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26330.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	103.54	93.08	123.02	80.97	80.24	119.76	103.51	96.39	89.31
Merged-chr8-84706867-3	chr8	84706342	84707342	+	863.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	5385.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	36.61	54.37	71.22	37.78	29.39	115.75	54.92	36.26	66.82
Merged-chr13-49381412-3	chr13	49380923	49381923	+	863.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039179, intron 6 of 6)	intron (NM_001039179, intron 6 of 6)	-39800.0	NR_075085	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	6.86	4.61	1.85	4.05	3.73	12.86	2.11	1.33	5.0
Merged-chr2-156201621-3	chr2	156201125	156202125	+	863.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	4978.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	59.49	37.32	37.0	64.77	55.05	52.25	42.25	35.37	26.85
Merged-chr3-55612384-3	chr3	55611889	55612889	+	863.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150661.0	NM_001357476	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	8.01	6.45	11.1	10.12	6.06	3.22	11.62	7.07	6.25
Merged-chr14-9470585-2	chr14	9470081	9471081	+	863.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-413514.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.29	7.83	1.85	4.72	9.8	3.22	2.11	2.65	6.87
Merged-chr6-97235160-1	chr6	97234660	97235660	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	17620.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	5.15	10.14	1.85	11.47	5.6	12.86	1.06	2.65	5.62
Merged-chr5-77358566-1	chr5	77358066	77359066	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	48082.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	3.43	8.75	0.0	14.84	12.6	3.22	7.39	1.77	5.0
Merged-chr11-103982426-3	chr11	103981915	103982915	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 4 of 4)	intron (NM_007477, intron 4 of 4)	15544.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	29.75	28.57	24.97	85.69	63.91	93.24	69.71	76.05	56.21
Merged-chr18-73753020-3	chr18	73752515	73753515	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	PB1D10|SINE|Alu	1464.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	86.95	103.22	59.2	62.75	64.84	72.34	94.0	76.94	84.94
Merged-chr3-31096888-3	chr3	31096394	31097394	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011386, exon 2 of 7)	5' UTR (NM_011386, exon 2 of 7)	1836.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	180.77	238.23	135.97	176.1	202.0	151.11	298.9	377.61	120.53
Merged-chr14-25464747-1	chr14	25464247	25465247	+	863.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	5562.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	9.72	9.22	4.62	12.82	6.06	6.43	5.28	2.65	3.75
Merged-chr13-112785187-3	chr13	112784688	112785688	+	863.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15589.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.86	4.15	9.25	28.34	20.06	32.15	46.47	48.2	38.1
Merged-chr3-27859469-3	chr3	27858963	27859963	+	863.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36905.0	NM_001164437	208613.0	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	45.19	62.67	64.75	35.76	52.25	66.71	34.85	49.08	41.22
Merged-chr11-69621995-3	chr11	69621494	69622494	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356469)	promoter-TSS (NM_001356469)	-58.0	NM_026991	69215.0	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	52.06	70.04	35.15	48.58	54.58	45.82	79.21	77.38	52.46
Merged-chr10-39267153-3	chr10	39266658	39267658	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102641.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	26.89	27.19	24.97	27.66	25.19	23.31	16.9	10.17	16.86
Merged-chr11-19955844-3	chr11	19955341	19956341	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	31399.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	41.76	38.71	32.37	38.46	32.19	35.37	30.63	20.78	25.61
Merged-chr7-143629742-3	chr7	143629260	143630260	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153817, exon 2 of 2)	non-coding (NR_153817, exon 2 of 2)	1690.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	24.03	24.88	25.9	20.24	21.46	17.68	20.07	22.99	12.49
Merged-chr18-34223786-3	chr18	34223336	34224336	+	863.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007462, intron 1 of 15)	intron (NM_007462, intron 1 of 15)	-2064.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	74.94	75.11	45.32	83.66	46.65	45.82	63.37	77.82	22.48
Merged-chr2-18649087-3	chr2	18648582	18649582	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23380.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	14.3	17.97	8.32	18.89	8.86	10.45	45.42	26.97	6.87
Merged-chr15-99093446-3	chr15	99092943	99093943	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5715.0	NM_001024702	239659.0	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	2.29	6.45	0.0	5.4	5.13	5.63	5.28	4.86	11.87
Merged-chr15-5576840-3	chr15	5576333	5577333	+	863.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 2 of 4)	intron (NR_045274, intron 2 of 4)	80515.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	20.59	10.14	24.97	10.12	4.2	7.23	12.67	13.27	6.87
Merged-chr7-98322639-3	chr7	98322122	98323122	+	863.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1414.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	80.09	45.62	49.02	60.72	41.05	40.99	24.29	38.91	24.36
Merged-chr2-167660835-3	chr2	167660364	167661364	+	863.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	680.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	156.17	88.93	110.07	165.31	105.43	104.49	154.2	141.49	84.94
Merged-chr8-36685542-3	chr8	36685032	36686032	+	863.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	47522.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.72	9.22	12.95	13.49	12.13	16.08	5.28	2.21	5.0
Merged-chr13-24095000-2	chr13	24094499	24095499	+	863.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026825, intron 21 of 37)	MIR|SINE|MIR	-103785.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	6.86	4.15	1.85	8.1	6.06	4.82	5.28	0.0	3.12
Merged-chr16-92696814-3	chr16	92696337	92697337	+	863.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009821, exon 1 of 5)	5' UTR (NM_009821, exon 1 of 5)	492.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	72.08	70.96	24.97	73.54	55.98	58.68	52.81	57.92	20.61
Merged-chr4-139213298-3	chr4	139212793	139213793	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	19182.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	121.85	110.13	84.17	106.61	82.11	68.32	178.5	173.33	68.7
Merged-chr10-24928244-3	chr10	24927780	24928780	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007482)	promoter-TSS (NM_007482)	-810.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	31.46	23.96	33.3	26.99	29.39	22.51	83.44	65.0	37.47
Merged-chr7-125594046-3	chr7	125593565	125594565	+	863.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9364.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	11.44	9.22	10.17	4.72	5.6	8.84	16.9	17.69	11.87
Merged-chr8-117069873-2	chr8	117069367	117070367	+	863.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 5 of 42)	intron (NM_029686, intron 5 of 42)	12582.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	4.0	5.07	0.0	6.75	0.93	0.0	2.11	1.77	1.25
Merged-chr3-122619837-4	chr3	122619580	122620580	+	863.1488039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153118)	promoter-TSS (NM_153118)	-366.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	8.01	4.15	0.92	12.82	8.86	2.41	31.69	12.82	14.36
Merged-chr6-124907965-3	chr6	124907477	124908477	+	863.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008479, intron 5 of 7)	intron (NM_008479, intron 5 of 7)	3728.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	40.04	22.58	24.05	18.89	7.0	1.61	28.52	26.09	17.49
Merged-chr11-119440467-3	chr11	119439966	119440966	+	863.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49994.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	20.59	15.21	18.5	22.27	7.0	32.96	12.67	22.11	9.99
Merged-chr13-104948138-2	chr13	104947645	104948645	+	863.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029879, exon 6 of 6)	3' UTR (NM_029879, exon 6 of 6)	-84252.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	3.43	5.53	3.7	2.02	2.8	1.61	5.28	0.88	1.25
Merged-chr6-114294389-3	chr6	114293889	114294889	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	11754.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	42.9	40.09	19.42	35.76	21.46	23.31	36.97	36.7	8.12
Merged-chr17-86973063-4	chr17	86972609	86973609	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	9998.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	48.05	32.25	26.82	75.57	50.85	32.96	101.39	61.02	46.22
Merged-chr7-17060200-3	chr7	17059721	17060721	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162950, intron 1 of 14)	intron (NM_001162950, intron 1 of 14)	2206.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	8.01	14.28	9.25	10.12	6.06	13.66	13.73	7.07	21.86
Merged-chr17-45759028-3	chr17	45758549	45759549	+	863.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	24543.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	16.59	23.96	19.42	18.22	18.19	31.35	11.62	4.42	4.37
Merged-chr18-88924536-2	chr18	88924045	88925045	+	863.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30338.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.72	9.22	4.62	22.94	24.26	13.66	4.22	7.07	11.24
Merged-chr2-22744467-3	chr2	22743959	22744959	+	863.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29868.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	181.91	162.66	146.14	105.26	81.64	122.18	124.63	110.54	88.06
Merged-chr17-87153157-2	chr17	87152642	87153642	+	863.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41800.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	30.32	34.1	52.72	39.13	26.12	45.01	6.34	4.42	3.75
Merged-chr5-67303999-3	chr5	67303503	67304503	+	863.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2952.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	35.47	36.86	25.9	31.04	26.59	28.94	45.42	38.91	24.98
Merged-chrX-85871751-4	chrX	85871174	85872174	+	863.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	1401.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	85.24	138.24	105.44	128.2	120.36	76.36	129.91	160.95	84.31
Merged-chr15-79038052-3	chr15	79037545	79038545	+	863.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013847, exon 9 of 9)	3' UTR (NM_013847, exon 9 of 9)	-3840.0	NM_015738	14429.0	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	12.01	7.83	12.95	7.42	6.06	16.08	4.22	6.19	10.62
Merged-chr7-45247840-3	chr7	45247357	45248357	+	863.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324535, intron 1 of 12)	B2_Mm2|SINE|B2	7104.0	NM_001324535	381884.0	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	2.86	5.07	0.0	4.05	4.2	1.61	2.11	3.54	5.0
Merged-chr5-130455330-2	chr5	130454818	130455818	+	863.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	CT-rich|Low_complexity|Low_complexity	6526.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	13.16	15.21	16.65	12.82	8.86	10.45	14.79	19.46	19.36
Merged-chr11-73096112-1	chr11	73095612	73096612	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 1 of 30)	intron (NM_001361245, intron 1 of 30)	5517.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	13.73	23.04	18.5	26.31	27.99	34.56	10.56	1.77	3.75
Merged-chr11-119057082-3	chr11	119056579	119057579	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16166.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	54.35	48.38	19.42	82.99	68.11	62.7	51.75	37.14	26.23
Merged-chr7-110556386-1	chr7	110555886	110556886	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	RSINE1|SINE|B4	58534.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	18.88	12.9	25.9	16.87	10.26	11.25	12.67	11.5	9.99
Merged-chr14-77823037-1	chr14	77822537	77823537	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24069.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	4.0	5.07	3.7	7.42	6.06	8.84	11.62	14.15	3.12
Merged-chr19-58194059-3	chr19	58193565	58194565	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102139.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	21.17	30.87	29.6	15.52	20.06	11.25	5.28	5.31	4.37
Merged-chr11-110642667-1	chr11	110642167	110643167	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	163327.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.29	3.23	1.85	5.4	3.27	6.43	3.17	3.98	3.75
Merged-chr17-56277493-1	chr17	56276993	56277993	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	-726.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	166.47	172.33	107.29	174.08	166.54	114.14	118.29	152.99	87.43
Merged-chr10-8876340-1	chr10	8875840	8876840	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	(CA)n|Simple_repeat|Simple_repeat	9730.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	91.53	83.86	69.37	103.23	71.84	76.36	96.11	66.77	37.47
Merged-chr11-63042654-1	chr11	63042154	63043154	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19005.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	27.46	24.88	5.55	3.37	3.27	0.0	3.17	3.54	6.25
Merged-chr2-102899872-3	chr2	102899369	102900369	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	1796.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	109.83	154.82	96.2	155.19	102.63	102.08	149.98	163.16	127.4
Merged-chr4-108383302-1	chr4	108382802	108383802	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001099303, exon 1 of 3)	exon (NM_001099303, exon 1 of 3)	353.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	7.44	0.0	3.7	3.37	3.27	1.61	2.11	1.77	1.25
Merged-chr2-124666539-1	chr2	124666039	124667039	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172537, exon 17 of 17)	3' UTR (NM_172537, exon 17 of 17)	12958.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	18.31	14.28	20.35	22.27	12.6	12.06	22.18	12.82	13.12
Merged-chr16-59460779-1	chr16	59460279	59461279	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081190, intron 8 of 8)	B3A|SINE|B2	8459.0	NR_040568	75636.0	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	1.14	0.46	0.92	0.67	2.8	0.0	3.17	2.21	1.25
Merged-chr1-52764697-1	chr1	52764197	52765197	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37339.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	20.02	12.9	30.52	46.56	33.59	46.62	41.19	41.56	19.98
Merged-chr13-63112216-1	chr13	63111716	63112716	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-127813.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.0	6.91	0.92	15.52	15.86	6.43	2.11	4.42	0.0
Merged-chr12-117831426-1	chr12	117830926	117831926	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12435.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	9.72	10.6	14.8	7.42	9.33	0.0	4.22	2.21	5.0
Merged-chr14-48189547-1	chr14	48189047	48190047	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 2 of 5)	intron (NM_033602, intron 2 of 5)	-9169.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.43	3.23	0.0	6.07	7.93	1.61	3.17	0.0	3.75
Merged-chr5-5269351-1	chr5	5268851	5269851	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-3283.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.44	3.23	9.25	2.02	2.8	8.04	1.06	0.0	1.87
Merged-chr2-83726147-1	chr2	83725647	83726647	+	863.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008402, intron 1 of 29)	intron (NM_008402, intron 1 of 29)	1750.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	35.47	37.32	14.8	35.76	40.59	33.76	58.09	82.69	43.09
Merged-chr7-89299151-1	chr7	89298651	89299651	+	863.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028343, intron 3 of 14)	intron (NM_028343, intron 3 of 14)	39636.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.72	5.99	0.92	4.72	5.13	4.82	6.34	3.54	3.12
Merged-chrY-90811926-1	chrY	90811426	90812426	+	863.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	IMPB_01|Satellite|Satellite	26484.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	2.29	0.46	0.0	2.7	0.47	0.0	12.67	4.86	44.34
Merged-chr5-28168535-3	chr5	28168174	28169174	+	862.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010134, intron 1 of 1)	intron (NM_010134, intron 1 of 1)	2978.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	4.0	5.07	9.25	4.72	4.2	3.22	8.45	2.65	3.75
Merged-chr5-86935460-3	chr5	86934957	86935957	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-8954.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	4.0	4.61	0.0	9.45	7.0	8.04	19.01	9.29	5.62
Merged-chr4-70378203-3	chr4	70377694	70378694	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32241.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	4.58	25.8	4.62	5.4	16.33	2.41	6.34	7.96	5.0
Merged-chr7-43378429-3	chr7	43377916	43378916	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27075.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	5.15	2.3	7.4	6.75	2.33	4.02	1.06	2.21	3.75
Merged-chrX-13851482-3	chrX	13851001	13852001	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 4 of 4)	LTR16A2|LTR|ERVL	-4945.0	NM_009806	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	4.58	7.37	7.4	4.72	14.93	8.04	10.56	3.98	2.5
Merged-chr14-119027340-3	chr14	119026828	119027828	+	862.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 26 of 38)	intron (NM_001081252, intron 26 of 38)	-71637.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	1.72	1.84	2.77	2.02	6.06	1.61	3.17	2.21	6.25
Merged-chr9-119401337-2	chr9	119400847	119401847	+	862.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313757)	promoter-TSS (NM_001313757)	-831.0	NM_007397	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	19.45	25.34	31.45	26.31	31.26	34.56	46.47	66.33	34.35
Merged-chr6-115317165-3	chr6	115316679	115317679	+	862.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43772.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	57.21	49.76	39.77	78.27	63.91	56.27	62.31	57.92	18.11
Merged-chr3-96595438-3	chr3	96594947	96595947	+	862.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1189.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	19.45	5.53	25.9	66.8	27.52	31.35	32.74	23.43	14.99
Merged-chr17-47924613-4	chr17	47924037	47925037	+	862.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	95.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	15.45	10.14	5.55	23.62	16.79	9.65	15.84	3.98	7.49
Merged-chr10-126513398-2	chr10	126512898	126513898	+	862.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196993.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	10.87	14.28	9.25	10.8	14.93	9.65	3.17	2.65	0.0
Merged-chr11-3138516-3	chr11	3137991	3138991	+	862.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030207, intron 22 of 32)	MT2B|LTR|ERVL	14470.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	40.62	42.39	77.7	39.81	56.91	88.42	8.45	7.96	123.03
Merged-chr4-155488447-2	chr4	155487930	155488930	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2931.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	99.54	111.97	119.32	72.19	83.04	102.08	106.67	134.86	79.94
Merged-chr1-45924741-2	chr1	45924251	45925251	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016917, exon 2 of 8)	exon (NM_016917, exon 2 of 8)	843.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	101.83	166.34	62.9	117.4	121.76	105.3	182.72	209.15	46.84
Merged-chr11-44468542-2	chr11	44468037	44469037	+	862.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024475, intron 1 of 10)	intron (NM_024475, intron 1 of 10)	2011.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	17.16	12.9	12.02	18.22	9.8	11.25	24.29	12.38	5.0
Merged-chr16-50526128-3	chr16	50525617	50526617	+	862.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040380)	promoter-TSS (NR_040380)	-128.0	NR_040380	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	12.01	8.75	1.85	5.4	7.46	8.84	20.07	21.67	6.25
Merged-chr17-5599161-2	chr17	5598664	5599664	+	862.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	106564.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	11.44	8.75	1.85	27.66	12.6	15.27	12.67	6.63	8.74
Merged-chr11-20108360-3	chr11	20107846	20108846	+	862.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4605.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	46.91	47.46	80.47	33.74	28.92	43.4	55.98	59.69	91.81
Merged-chr10-99250910-1	chr10	99250410	99251410	+	862.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12321.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	3.43	10.14	3.7	7.42	6.53	3.22	3.17	4.42	8.74
Merged-chr2-49734609-3	chr2	49734111	49735111	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53075.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	6.86	11.06	10.17	8.77	4.2	9.65	7.39	7.07	4.37
Merged-chr6-108398302-3	chr6	108397788	108398788	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 30 of 61)	intron (NM_010585, intron 30 of 61)	-91455.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	68.07	68.66	38.85	66.12	55.05	49.83	38.02	35.82	9.37
Merged-chr5-93265661-3	chr5	93265164	93266164	+	862.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1909.0	NM_007635	12452.0	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	69.79	84.32	100.82	64.1	55.05	77.97	89.78	89.76	86.18
Merged-chr2-91205641-3	chr2	91205176	91206176	+	862.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	2764.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	213.38	238.69	224.76	194.99	149.75	185.68	176.38	194.11	174.87
Merged-chr12-70110112-2	chr12	70109634	70110634	+	862.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	1495.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	9.72	5.53	11.1	6.75	4.2	4.82	12.67	13.71	3.75
Merged-chr11-32629893-2	chr11	32629398	32630398	+	862.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12657.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	7.44	5.53	11.1	3.37	6.53	0.8	10.56	7.07	8.74
Merged-chrX-57282438-3	chrX	57281940	57282940	+	862.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358573, intron 5 of 20)	intron (NM_001358573, intron 5 of 20)	44161.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	12.01	7.83	12.95	12.82	1.87	11.25	3.17	3.54	2.5
Merged-chr7-35796275-3	chr7	35795779	35796779	+	862.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177739, intron 2 of 6)	intron (NM_177739, intron 2 of 6)	-6313.0	NR_033567	78547.0	Mm.406883	NR_033567	ENSMUSG00000044997	E130304I02Rik	-	RIKEN cDNA E130304I02 gene	ncRNA	4.58	7.37	1.85	4.05	6.06	1.61	6.34	0.88	0.0
Merged-chr14-61757295-2	chr14	61756810	61757810	+	862.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74937.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	13.16	5.07	1.85	11.47	5.6	8.84	17.96	13.27	13.12
Merged-chr12-99381075-3	chr12	99380558	99381558	+	862.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 2 of 5)	Lx4A|LINE|L1	69016.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	17.16	15.67	18.5	11.47	4.2	16.88	26.4	9.73	17.49
Merged-chr18-65513061-1	chr18	65512561	65513561	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	-67169.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	18.88	23.04	22.2	18.22	18.66	20.9	10.56	8.84	10.62
Merged-chr3-36447145-3	chr3	36446649	36447649	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28375.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	14.3	11.52	7.4	32.39	15.86	16.08	48.58	34.93	26.23
Merged-chr17-8214572-3	chr17	8214044	8215044	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21499.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	21.17	16.59	7.4	16.19	12.6	2.41	4.22	1.33	7.49
Merged-chr10-81127747-1	chr10	81127247	81128247	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8524.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	9.15	9.22	7.4	7.42	4.67	6.43	8.45	4.86	7.49
Merged-chr19-29228296-3	chr19	29227785	29228785	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23518.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.43	2.76	1.85	6.07	4.67	2.41	1.06	2.65	5.0
Merged-chr1-163383786-1	chr1	163383286	163384286	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19883.0	NR_132627	98376.0	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	2.86	5.07	3.7	6.07	2.8	6.43	5.28	4.86	9.99
Merged-chr17-65558406-3	chr17	65557910	65558910	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17628.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	4.58	1.84	3.7	5.4	0.93	0.0	1.06	0.0	3.75
Merged-chr12-41484379-1	chr12	41483879	41484879	+	862.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1678.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	7.44	2.76	3.7	4.05	4.2	9.65	3.17	0.88	3.12
Merged-chr7-34812883-3	chr7	34812384	34813384	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175140)	promoter-TSS (NM_175140)	-173.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	5.15	1.84	1.85	6.07	0.93	12.86	14.79	7.07	2.5
Merged-chr4-86672492-3	chr4	86672013	86673013	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2454.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	166.47	113.35	76.77	204.44	164.21	105.3	109.84	92.86	57.46
Merged-chr5-92254692-3	chr5	92254197	92255197	+	862.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011148, intron 1 of 16)	intron (NM_011148, intron 1 of 16)	1581.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	4.58	4.15	3.7	10.8	3.73	3.22	3.17	3.54	2.5
Merged-chr9-52168393-2	chr9	52167828	52168828	+	862.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-217.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	17.16	12.44	3.7	12.82	4.2	3.22	5.28	1.77	0.0
Merged-chr8-22433153-3	chr8	22432651	22433651	+	862.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21811.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	4.58	2.3	0.0	5.4	5.6	6.43	2.11	0.88	2.5
Merged-chr11-79523758-2	chr11	79523257	79524257	+	862.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077496)	promoter-TSS (NM_001077496)	5.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	124.71	182.93	84.17	99.18	102.17	96.45	175.33	182.62	88.06
Merged-chr2-143975434-3	chr2	143974934	143975934	+	862.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024281, intron 2 of 23)	intron (NM_024281, intron 2 of 23)	35829.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	18.31	13.82	35.15	18.22	11.2	21.7	20.07	16.36	18.11
Merged-chr3-60531468-3	chr3	60530974	60531974	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	30295.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	50.91	33.18	16.65	60.05	53.18	49.83	34.85	32.72	21.86
Merged-chr6-120917462-3	chr6	120916944	120917944	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007544)	promoter-TSS (NM_007544)	-620.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	90.96	74.19	49.95	74.89	65.31	49.83	81.33	99.93	29.98
Merged-chr16-77300704-3	chr16	77300219	77301219	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28609.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	24.03	15.67	11.1	12.14	11.66	7.23	5.28	10.61	7.49
Merged-chr19-29355065-3	chr19	29354547	29355547	+	862.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026362, intron 3 of 5)	intron (NM_026362, intron 3 of 5)	6824.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	22.88	7.83	16.65	18.89	15.86	20.09	29.57	11.05	14.99
Merged-chr11-19019779-4	chr11	19019338	19020338	+	862.5499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001193271)	promoter-TSS (NM_001193271)	-869.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	24.6	39.63	65.67	24.96	32.66	32.15	63.37	59.25	54.96
Merged-chr4-150898899-3	chr4	150898401	150899401	+	862.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020569, intron 6 of 6)	intron (NM_020569, intron 6 of 6)	11020.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	4.0	5.53	3.7	2.7	2.33	0.0	3.17	4.86	9.99
Merged-chr1-172588681-3	chr1	172588188	172589188	+	862.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029084, intron 1 of 4)	G-rich|Low_complexity|Low_complexity	1880.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	12.01	9.22	16.65	12.14	11.2	14.47	19.01	25.2	26.23
Merged-chr2-31245864-1	chr2	31245364	31246364	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019681)	promoter-TSS (NM_019681)	-59.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	3.43	0.92	3.7	7.42	3.27	2.41	8.45	0.44	0.0
Merged-chr4-148075552-2	chr4	148075032	148076032	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12532.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	16.59	6.91	12.02	14.17	9.8	22.51	19.01	19.01	18.74
Merged-chr3-68713755-1	chr3	68713255	68714255	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22331.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	2.86	2.76	5.55	2.7	0.93	0.8	8.45	2.21	2.5
Merged-chr5-43082513-1	chr5	43082013	43083013	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150950.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	2.86	6.91	0.0	13.49	4.2	1.61	9.51	10.17	4.37
Merged-chr16-48863406-1	chr16	48862906	48863906	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-9202.0	NM_181596	245195.0	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	16.02	10.6	11.1	14.84	7.46	6.43	14.79	7.52	13.74
Merged-chr9-37247169-1	chr9	37246669	37247669	+	862.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	8569.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	117.27	145.61	98.97	139.67	107.3	106.9	118.29	149.45	54.33
Merged-chr16-21704703-3	chr16	21704221	21705221	+	862.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10056.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	10.87	6.45	14.8	19.57	20.53	9.65	10.56	11.5	5.62
Merged-chr16-92821188-3	chr16	92820632	92821632	+	862.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4942.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	32.04	15.21	14.8	24.96	18.66	8.84	21.12	13.27	13.12
Merged-chr7-105651330-3	chr7	105650827	105651827	+	862.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153393, intron 4 of 4)	intron (NR_153393, intron 4 of 4)	10882.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	13.16	6.45	9.25	9.45	10.26	4.82	13.73	7.52	0.0
Merged-chrX-169338448-3	chrX	169337953	169338953	+	862.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361166, intron 4 of 5)	ORR1F|LTR|ERVL-MaLR	18058.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	8.58	5.07	3.7	3.37	5.6	4.02	3.17	4.42	3.75
Merged-chr3-129533900-3	chr3	129533426	129534426	+	862.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	CpG	-1538.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	12.01	7.37	12.95	35.09	27.99	15.27	15.84	10.61	18.74
Merged-chr2-128334254-3	chr2	128333730	128334730	+	862.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	L1MB2|LINE|L1	95121.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	12.59	8.75	15.72	26.31	21.46	49.83	26.4	14.15	16.86
Merged-chr6-72096368-3	chr6	72095857	72096857	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1251.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	53.77	69.58	62.9	50.6	69.51	49.83	95.06	91.97	53.08
Merged-chr5-21547209-3	chr5	21546726	21547726	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	3699.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	8.01	5.07	1.85	2.02	4.67	3.22	8.45	3.1	5.0
Merged-chr13-52595042-3	chr13	52594549	52595549	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198977, intron 1 of 13)	intron (NM_001198977, intron 1 of 13)	-1833.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	44.05	66.35	51.8	51.28	34.99	57.87	43.3	33.16	34.97
Merged-chr17-26512645-3	chr17	26512149	26513149	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-4177.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.3	12.9	18.5	43.86	57.38	45.01	22.18	19.01	18.11
Merged-chrX-153716929-3	chrX	153716442	153717442	+	862.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6612.0	NM_027327	70123.0	Mm.146408	NM_027327	ENSMUSG00000086316	Nbdy	2210013O21Rik|AI181827|Thp5	negative regulator of P-body association	protein-coding	4.0	2.76	0.92	4.72	2.8	3.22	0.0	1.77	1.25
Merged-chr4-150030767-3	chr4	150030204	150031204	+	862.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21681.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	20.59	21.2	30.52	34.41	36.39	13.66	51.75	44.66	14.36
Merged-chr4-14922180-3	chr4	14921689	14922689	+	862.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7719.0	NM_001356579	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	1.72	0.92	3.7	5.4	0.47	0.8	5.28	0.88	1.87
Merged-chr12-55485922-3	chr12	55485376	55486376	+	862.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6771.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	22.31	7.37	20.35	10.8	7.0	9.65	15.84	8.84	12.49
Merged-chr11-106561020-3	chr11	106560522	106561522	+	862.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198292, intron 2 of 11)	intron (NM_198292, intron 2 of 11)	51908.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	34.32	32.25	40.7	51.28	41.52	72.34	30.63	37.58	48.09
Merged-chr12-17692151-3	chr12	17691579	17692579	+	862.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	1270.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	125.28	145.15	124.87	89.74	81.64	102.08	157.37	129.11	130.53
Merged-chr2-143837397-2	chr2	143836911	143837911	+	862.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	25762.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	8.01	6.45	13.87	4.72	2.8	3.22	6.34	3.54	8.74
Merged-chr2-129342263-2	chr2	129341768	129342768	+	862.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27634.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	5.72	5.53	2.77	4.72	7.46	11.25	14.79	16.36	24.98
Merged-chr7-75642526-3	chr7	75642016	75643016	+	862.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186982.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	94.39	105.98	42.55	120.1	98.9	76.36	23.24	16.36	15.61
Merged-chr16-57563496-1	chr16	57562996	57563996	+	862.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	14254.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	74.37	81.56	65.67	97.16	49.45	65.91	57.03	59.69	47.46
Merged-chrX-104482780-3	chrX	104482266	104483266	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081189)	promoter-TSS (NM_001081189)	-16.0	NM_001081189	331487.0	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	19.45	17.51	33.3	22.27	12.6	24.92	26.4	12.82	18.74
Merged-chr2-58850714-1	chr2	58850214	58851214	+	862.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 11 of 13)	MTEa|LTR|ERVL-MaLR	95530.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	5.72	6.45	6.47	6.75	14.0	10.45	3.17	4.42	0.0
Merged-chr5-148509375-3	chr5	148508884	148509884	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 4 of 6)	intron (NM_001359199, intron 4 of 6)	42289.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	26.89	30.41	35.15	35.76	29.39	47.42	32.74	30.51	19.98
Merged-chr2-170328717-3	chr2	170328223	170329223	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27638.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	70.93	49.76	51.8	66.12	28.46	47.42	64.43	63.23	59.95
Merged-chr10-94645487-3	chr10	94644994	94645994	+	862.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	43119.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	4.0	5.99	3.7	4.72	15.86	11.25	9.51	4.86	8.12
Merged-chr11-89028930-2	chr11	89028434	89029434	+	862.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29531.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	69.22	51.15	44.4	62.75	37.32	60.28	212.29	270.61	161.75
Merged-chr9-22225269-2	chr9	22224784	22225784	+	862.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172763)	promoter-TSS (NM_172763)	-419.0	NM_172763	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	65.21	50.69	43.47	59.38	40.59	46.62	88.72	58.37	35.6
Merged-chr6-113649594-3	chr6	113649094	113650094	+	862.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	11127.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	65.79	49.76	56.42	55.33	41.52	72.34	64.43	55.27	46.84
Merged-chr14-61689538-3	chr14	61689050	61690050	+	862.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7177.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	17.73	10.14	7.4	31.04	6.53	17.68	12.67	9.73	6.87
Merged-chr6-86594835-3	chr6	86594333	86595333	+	862.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33341.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	46.91	38.25	30.52	78.94	71.38	91.63	108.79	100.37	38.1
Merged-chr12-25398911-3	chr12	25398434	25399434	+	862.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269760.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.72	3.23	3.7	11.47	3.27	4.82	5.28	3.98	3.12
Merged-chr19-56745194-3	chr19	56744666	56745666	+	862.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22794.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	78.37	83.4	74.92	104.58	109.16	76.36	118.29	142.82	91.81
Merged-chr2-58489740-3	chr2	58489262	58490262	+	862.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	71648.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	45.19	43.31	39.77	18.22	11.2	12.86	4.22	1.77	3.75
Merged-chr9-123957026-3	chr9	123956518	123957518	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11674.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	20.59	14.28	5.55	12.82	10.26	25.72	16.9	9.29	11.87
Merged-chr7-75596255-3	chr7	75595744	75596744	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 5 of 36)	intron (NM_029332, intron 5 of 36)	140710.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	5.15	2.76	3.7	5.4	0.93	0.0	7.39	3.1	5.0
Merged-chr15-6626265-3	chr15	6625746	6626746	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28057.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	40.62	45.16	25.9	53.3	20.53	31.35	48.58	52.62	33.72
Merged-chr1-16689612-3	chr1	16689088	16690088	+	862.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 1 of 4)	intron (NM_001159711, intron 1 of 4)	1132.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	41.76	74.65	49.95	70.85	48.98	66.71	83.44	88.43	44.34
Merged-chr5-149241184-3	chr5	149240733	149241733	+	862.0166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23771.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	24.6	25.34	18.5	4.72	11.2	19.29	24.29	24.76	21.23
Merged-chr4-32163025-1	chr4	32162525	32163525	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198918.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	9.72	5.07	6.47	2.7	5.6	2.41	10.56	7.07	8.12
Merged-chr3-31445654-1	chr3	31445154	31446154	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135335.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	1.72	2.3	1.85	9.45	2.33	4.02	11.62	5.75	3.75
Merged-chr2-102990453-3	chr2	102989958	102990958	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83055.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	38.33	33.18	38.85	66.8	55.05	61.09	58.09	72.07	50.59
Merged-chr12-87375852-1	chr12	87375352	87376352	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	B3|SINE|B2	12503.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	13.73	11.98	5.55	17.54	10.26	12.86	17.96	8.84	7.49
Merged-chr10-50895348-1	chr10	50894848	50895848	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011376)	promoter-TSS (NM_011376)	-303.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	1.72	1.38	5.55	3.37	1.87	0.0	2.11	0.0	0.0
Merged-chr15-6534049-1	chr15	6533549	6534549	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45798.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	4.0	2.76	1.85	3.37	3.27	3.22	1.06	3.98	1.87
Merged-chr4-137047786-2	chr4	137047292	137048292	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198248, intron 1 of 18)	intron (NM_198248, intron 1 of 18)	903.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	32.61	35.48	37.0	16.87	14.46	16.88	28.52	22.11	9.99
Merged-chr1-171562910-1	chr1	171562410	171563410	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	3717.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	13.73	12.44	20.35	10.12	15.86	11.25	10.56	7.96	6.25
Merged-chr2-27775883-1	chr2	27775383	27776383	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	65300.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.0	0.46	0.0	2.02	1.4	7.23	0.0	1.77	1.25
Merged-chr2-4504672-1	chr2	4504172	4505172	+	862.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-55082.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	19.45	12.44	22.2	9.45	6.06	7.23	38.02	21.22	11.24
Merged-chr12-84316925-4	chr12	84316457	84317457	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045546)	promoter-TSS (NR_045546)	98.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	65.79	67.74	65.67	51.95	71.84	93.24	82.38	61.9	42.47
Merged-chr18-24529555-1	chr18	24529055	24530055	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360807, intron 1 of 7)	CpG	649.0	NM_144861	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	54.92	49.76	45.32	68.82	68.11	46.62	84.49	65.88	54.33
Merged-chr17-32111333-1	chr17	32110833	32111833	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19910.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	4.58	3.69	5.55	14.17	7.0	3.22	10.56	7.07	3.75
Merged-chr5-99236245-1	chr5	99235745	99236745	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	B3|SINE|B2	16682.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	41.76	37.32	40.7	39.81	31.26	36.17	35.91	31.84	15.61
Merged-chr8-42194081-2	chr8	42193607	42194607	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	366840.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.29	4.15	5.55	4.72	7.0	9.65	1.06	2.21	4.37
Merged-chr2-21261803-3	chr2	21261301	21262301	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56077.0	NM_177588	208967.0	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	8.58	3.69	1.85	5.4	3.73	3.22	0.0	1.33	3.75
Merged-chr1-67044140-1	chr1	67043640	67044640	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5268.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	3.43	1.84	1.85	6.07	2.33	1.61	4.22	0.88	2.5
Merged-chr5-72764081-1	chr5	72763581	72764581	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 13 of 17)	B3|SINE|B2	-11304.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	8.58	8.75	9.25	10.12	10.73	16.08	8.45	6.19	10.62
Merged-chr6-119341591-1	chr6	119341091	119342091	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362214, intron 4 of 11)	MLT1J|LTR|ERVL-MaLR	-10825.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	4.58	5.07	3.7	2.7	3.27	8.04	1.06	1.77	3.75
Merged-chr8-35571026-1	chr8	35570526	35571526	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-16772.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	6.29	8.75	4.62	3.37	4.2	3.22	3.17	2.65	1.25
Merged-chr14-102811246-3	chr14	102810750	102811750	+	862.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	171382.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	42.9	52.99	38.85	34.41	35.92	48.23	39.08	53.5	45.59
Merged-chr6-17772689-1	chr6	17772189	17773189	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	23519.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	13.73	9.68	12.95	4.72	8.4	4.82	12.67	7.07	8.74
Merged-chr2-180256402-1	chr2	180255902	180256902	+	862.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025587)	promoter-TSS (NM_025587)	-977.0	NM_025587	66481.0	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	95.53	85.71	77.7	85.69	101.23	135.04	87.66	88.43	71.2
Merged-chr4-65496624-1	chr4	65496124	65497124	+	862.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207109, intron 19 of 22)	intron (NM_207109, intron 19 of 22)	-108362.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.57	2.3	15.72	4.72	2.8	5.63	4.22	0.0	2.5
Merged-chr4-150570052-3	chr4	150569536	150570536	+	861.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	(CCCTG)n|Simple_repeat|Simple_repeat	82138.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	252.28	282.92	171.12	251.67	266.84	230.69	299.96	315.71	156.76
Merged-chr16-78200289-3	chr16	78199802	78200802	+	861.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55152.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	36.61	24.88	19.42	45.21	25.66	39.39	39.08	59.69	23.73
Merged-chr1-172364815-3	chr1	172364286	172365286	+	861.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	-11745.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	13.73	13.82	12.02	18.89	9.33	20.9	27.46	18.13	11.24
Merged-chr1-136726880-3	chr1	136726361	136727361	+	861.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30650.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	23.45	19.81	22.2	6.75	6.53	3.22	33.8	25.65	11.87
Merged-chr11-118247640-3	chr11	118247108	118248108	+	861.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	984.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	164.18	167.73	140.59	246.27	243.05	204.16	270.38	268.4	168.62
Merged-chr7-114530784-2	chr7	114530274	114531274	+	861.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011055, exon 13 of 16)	exon (NM_011055, exon 13 of 16)	32198.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	16.02	24.42	12.02	18.89	18.66	12.86	16.9	9.29	13.12
Merged-chr13-117237336-3	chr13	117236840	117237840	+	861.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	16767.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	5.72	5.53	5.55	6.75	3.27	8.04	3.17	4.42	1.87
Merged-chr15-68260164-3	chr15	68259662	68260662	+	861.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_198644	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	58.35	47.46	38.85	60.72	41.99	49.03	59.15	54.83	33.1
Merged-chr6-29216810-2	chr6	29216300	29217300	+	861.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302933)	promoter-TSS (NM_001302933)	-436.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	159.6	116.12	150.77	137.64	127.82	148.7	149.98	149.89	74.32
Merged-chr17-24285915-2	chr17	24285414	24286414	+	861.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031621, intron 21 of 29)	intron (NM_001031621, intron 21 of 29)	-34505.0	NM_007634	12449.0	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	8.01	12.44	9.25	16.19	18.19	13.66	3.17	3.54	7.49
Merged-chr17-45703470-2	chr17	45702977	45703977	+	861.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17128.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	13.16	15.21	7.4	1.35	5.6	12.06	25.35	11.94	8.12
Merged-chr17-78682446-2	chr17	78681964	78682964	+	861.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 6 of 17)	intron (NM_011500, intron 6 of 17)	54096.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	30.32	34.1	53.65	34.41	43.39	29.74	22.18	21.22	19.98
Merged-chr5-147992749-3	chr5	147992256	147993256	+	861.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029920, intron 1 of 14)	ORR1D2|LTR|ERVL-MaLR	35436.0	NM_029920	77521.0	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	1.72	2.3	1.85	3.37	5.13	4.82	4.22	7.07	9.99
Merged-chr15-76825734-3	chr15	76825248	76826248	+	861.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7578.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	16.02	9.68	9.25	10.8	4.2	8.04	5.28	5.75	6.25
Merged-chr4-137890790-3	chr4	137890296	137891296	+	861.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	28559.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	2.29	2.3	2.77	9.45	2.33	6.43	6.34	2.65	6.25
Merged-chr9-77919323-2	chr9	77918813	77919813	+	861.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	1948.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	20.02	12.44	20.35	10.12	8.86	6.43	13.73	3.98	6.25
Merged-chr14-102929736-3	chr14	102929250	102930250	+	861.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	52882.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	13.73	18.43	7.4	18.89	11.66	4.82	21.12	6.19	14.99
Merged-chr5-112298819-1	chr5	112298319	112299319	+	861.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	22128.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	22.31	17.05	12.02	31.04	23.79	8.84	27.46	21.67	8.74
Merged-chr11-114884114-3	chr11	114883611	114884611	+	861.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5930.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	227.68	152.52	146.14	211.86	137.15	168.8	119.35	124.69	107.42
Merged-chr4-42902325-3	chr4	42901838	42902838	+	861.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14268.0	NM_001355693	230085.0	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	5.15	5.53	5.55	4.05	3.27	0.8	3.17	0.88	3.75
Merged-chr17-69223647-3	chr17	69223151	69224151	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53555.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	77.23	76.03	56.42	93.11	89.1	75.56	104.56	95.95	43.72
Merged-chr17-31073482-3	chr17	31072997	31073997	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	15803.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	164.18	121.65	115.62	240.87	130.62	155.13	180.61	184.83	79.32
Merged-chrX-36743730-3	chrX	36743244	36744244	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001085497, exon 1 of 5)	exon (NM_001085497, exon 1 of 5)	112.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	74.37	80.64	78.62	72.19	65.31	76.36	96.11	94.62	41.84
Merged-chr14-44980104-3	chr14	44979620	44980620	+	861.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7991.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	4.58	5.07	4.62	6.07	4.2	3.22	6.34	1.77	5.0
Merged-chr6-129548191-3	chr6	129547697	129548697	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-14913.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	16.59	13.36	12.95	4.72	11.2	19.29	8.45	5.31	7.49
Merged-chr19-41092132-3	chr19	41091649	41092649	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 17 of 20)	intron (NM_011904, intron 17 of 20)	-15036.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	16.59	12.9	20.35	16.87	7.46	6.43	14.79	7.52	10.62
Merged-chr17-5576045-3	chr17	5575474	5576474	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	83374.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	107.55	121.65	91.57	130.9	111.96	143.88	106.67	90.2	80.56
Merged-chr1-173962888-1	chr1	173962388	173963388	+	861.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 6 of 6)	intron (NM_008327, intron 6 of 6)	19956.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	11.44	31.33	21.27	100.53	76.51	49.03	7.39	2.65	3.12
Merged-chr5-135935461-3	chr5	135934985	135935985	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018871)	promoter-TSS (NM_018871)	-844.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	67.5	54.37	40.7	70.85	34.06	63.5	34.85	42.89	29.98
Merged-chr16-85175044-1	chr16	85174544	85175544	+	861.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1337.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.0	3.69	0.92	19.57	7.0	20.09	1.06	1.77	0.62
Merged-chr17-56425688-3	chr17	56425195	56426195	+	861.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011218, exon 14 of 33)	exon (NM_011218, exon 14 of 33)	-6786.0	NR_105943	102465590.0		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	4.0	1.84	0.0	1.35	0.47	0.8	1.06	1.33	0.0
Merged-chr10-130228486-2	chr10	130227982	130228982	+	861.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17354.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	2.86	4.61	5.55	2.7	3.27	0.0	2.11	1.33	1.25
Merged-chr3-105709694-2	chr3	105709208	105710208	+	861.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	4250.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	13.16	5.07	11.1	30.36	14.93	16.08	13.73	8.4	6.25
Merged-chr14-118507486-2	chr14	118506983	118507983	+	861.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	84989.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	14.3	12.9	8.32	23.62	15.86	14.47	3.17	6.19	5.0
Merged-chr2-181659380-2	chr2	181658886	181659886	+	861.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12254.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	14.3	7.83	9.25	10.12	9.33	12.06	7.39	5.31	2.5
Merged-chr9-16229106-3	chr9	16228616	16229616	+	861.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	149115.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	9.72	5.53	3.7	5.4	7.93	9.65	13.73	6.63	11.24
Merged-chr19-32651233-3	chr19	32650739	32651739	+	861.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011864, intron 8 of 12)	intron (NM_011864, intron 8 of 12)	31234.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	20.59	28.57	26.82	26.31	22.39	22.51	40.14	57.48	22.48
Merged-chr10-59741700-3	chr10	59741171	59742171	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359267, intron 4 of 11)	intron (NM_001359267, intron 4 of 11)	39108.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	32.04	21.66	37.92	26.99	14.0	40.19	23.24	22.99	25.61
Merged-chr6-122310458-3	chr6	122310021	122311021	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010749, intron 1 of 6)	intron (NM_010749, intron 1 of 6)	1801.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	65.21	50.23	73.07	45.21	40.12	66.71	62.31	80.47	41.22
Merged-chr14-61774904-3	chr14	61774402	61775402	+	861.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-92529.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	41.19	50.23	38.85	66.12	33.12	52.25	41.19	37.58	28.1
Merged-chrX-151801128-3	chrX	151800560	151801560	+	861.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	38.33	19.81	31.45	30.36	31.72	35.37	31.69	29.63	27.48
Merged-chr15-75832206-1	chr15	75831706	75832706	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172121, intron 3 of 11)	ID_B1|SINE|B4	9702.0	NM_172121	223642.0	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	14.3	19.35	23.12	21.59	14.0	21.7	15.84	8.84	18.74
Merged-chr2-168197781-2	chr2	168197283	168198283	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132310, intron 9 of 11)	intron (NR_132310, intron 9 of 11)	9329.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	17.73	18.89	13.87	12.82	9.8	10.45	13.73	24.76	20.61
Merged-chr11-115422031-1	chr11	115421531	115422531	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183285, exon 2 of 6)	exon (NM_183285, exon 2 of 6)	1905.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	54.35	47.92	33.3	56.0	43.39	52.25	68.65	43.33	19.36
Merged-chr18-61321457-3	chr18	61320967	61321967	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 2 of 11)	intron (NM_133249, intron 2 of 11)	76433.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	18.31	22.12	16.65	13.49	10.26	23.31	41.19	23.88	19.98
Merged-chr3-89238486-2	chr3	89237982	89238982	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039466, intron 7 of 8)	intron (NM_001039466, intron 7 of 8)	6531.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	6.86	7.83	7.4	6.75	4.2	16.08	5.28	8.4	0.0
Merged-chr8-77509208-2	chr8	77508714	77509714	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-7842.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	7.44	4.61	1.85	7.42	5.6	0.0	2.11	0.88	5.0
Merged-chr15-63612302-3	chr15	63611805	63612805	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132697.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	72.65	80.18	71.22	65.45	66.71	62.7	122.52	131.32	58.08
Merged-chr10-116727440-2	chr10	116726970	116727970	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045345, intron 1 of 2)	L1MDa|LINE|L1	1707.0	NR_045345	72286.0	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	10.87	13.36	8.32	24.96	17.26	14.47	54.92	51.29	28.1
Merged-chr15-50819989-2	chr15	50819476	50820476	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69073.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	105.26	120.26	45.32	133.59	92.84	77.16	61.26	64.11	39.97
Merged-chr2-28585375-3	chr2	28584876	28585876	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2097.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	10.87	11.06	4.62	9.45	1.87	3.22	3.17	0.88	2.5
Merged-chr17-21535912-2	chr17	21535417	21536417	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131123)	promoter-TSS (NR_131123)	-39.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	58.92	53.91	70.3	60.05	47.58	63.5	95.06	83.57	43.72
Merged-chr8-31121158-2	chr8	31120660	31121660	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 2 of 5)	intron (NM_175136, intron 2 of 5)	9314.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	14.3	9.68	10.17	17.54	24.72	6.43	10.56	2.65	8.12
Merged-chr10-40129359-1	chr10	40128859	40129859	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	12895.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	85.24	83.86	93.42	74.22	76.51	112.53	101.39	92.41	104.3
Merged-chr18-20789609-1	chr18	20789109	20790109	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43205.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	4.0	8.29	3.7	6.07	9.33	9.65	9.51	3.54	3.75
Merged-chr6-29624039-2	chr6	29623564	29624564	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14215.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	7.44	3.23	6.47	9.45	4.2	16.08	7.39	4.86	3.75
Merged-chr19-6126924-2	chr19	6126427	6127427	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026912, intron 1 of 7)	intron (NM_026912, intron 1 of 7)	1288.0	NM_026912	69024.0	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	72.08	70.5	45.32	63.42	62.98	38.58	90.83	114.96	43.09
Merged-chr6-136554966-3	chr6	136554457	136555457	+	861.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36106.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	81.8	94.0	25.9	92.44	76.51	64.3	65.48	104.79	19.98
Merged-chr8-11347917-1	chr8	11347417	11348417	+	861.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-35091.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	3.43	3.69	0.0	5.4	3.27	8.04	5.28	0.88	8.74
Merged-chr13-33001799-1	chr13	33001299	33002299	+	861.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(ATG)n|Simple_repeat|Simple_repeat	-2742.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	5.72	7.83	10.17	2.02	1.87	3.22	8.45	7.07	5.0
Merged-chr15-79757282-3	chr15	79756792	79757792	+	861.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	14594.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	30.32	27.19	19.42	33.74	27.06	28.94	34.85	36.26	30.6
Merged-chr2-43862869-3	chr2	43862357	43863357	+	861.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 5 of 14)	intron (NM_001301831, intron 5 of 14)	114033.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	8.58	6.91	5.55	12.82	5.6	14.47	6.34	8.4	2.5
Merged-chr15-97993091-3	chr15	97992594	97993594	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113515, intron 15 of 52)	intron (NM_001113515, intron 15 of 52)	11630.0	NM_031163	12824.0	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	4.58	1.84	1.85	2.7	0.93	6.43	0.0	1.33	7.49
Merged-chr4-150568761-3	chr4	150568249	150569249	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	83425.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	87.52	105.52	61.05	75.57	77.44	74.75	70.76	105.24	69.95
Merged-chr13-60594425-3	chr13	60593917	60594917	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7530.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.0	5.07	7.4	5.4	6.06	4.82	6.34	2.65	3.75
Merged-chr2-10048094-3	chr2	10047618	10048618	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 1 of 6)	CpG	491.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	45.19	48.38	25.9	34.41	38.72	31.35	63.37	53.5	24.98
Merged-chr9-44444623-3	chr9	44444111	44445111	+	861.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-3743.0	NM_001033469	382074.0	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	16.59	15.67	5.55	12.14	7.93	7.23	10.56	7.96	11.24
Merged-chr13-45088020-3	chr13	45087527	45088527	+	861.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85931.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	24.6	15.67	5.55	54.65	30.79	20.09	55.98	49.96	16.86
Merged-chr3-104790478-2	chr3	104789956	104790956	+	861.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291859, intron 1 of 4)	intron (NM_001291859, intron 1 of 4)	1422.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	30.32	9.22	27.75	58.7	39.65	57.07	49.64	30.95	17.49
Merged-chr17-35359528-2	chr17	35359014	35360014	+	861.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17181.0	NM_010392	15013.0	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	6.86	4.61	5.55	8.1	8.86	4.82	3.17	3.98	5.0
Merged-chr2-19049757-4	chr2	19049190	19050190	+	861.38092	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51371.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	93.82	99.53	61.05	43.18	28.46	20.9	59.15	55.71	35.6
Merged-chr6-129171856-2	chr6	129171365	129172365	+	861.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8750.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	8.58	3.69	1.85	3.37	5.13	4.82	20.07	6.63	12.49
Merged-chr14-26668417-2	chr14	26667894	26668894	+	861.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178668, exon 1 of 3)	exon (NM_178668, exon 1 of 3)	1214.0	NR_106132	102465773.0		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	28.03	48.38	38.85	33.74	41.52	66.71	40.14	45.1	45.59
Merged-chr5-25099790-1	chr5	25099290	25100290	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	CpG	852.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	6.29	4.15	12.02	26.99	20.99	26.53	11.62	7.07	8.12
Merged-chr10-100742238-3	chr10	100741721	100742721	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-586.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	12.59	9.68	3.7	8.1	3.73	6.43	8.45	6.63	11.24
Merged-chrX-7638616-3	chrX	7638133	7639133	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009305)	promoter-TSS (NM_009305)	53.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	1.72	1.38	0.0	5.4	2.8	4.82	9.51	2.21	6.25
Merged-chr4-88450278-3	chr4	88449758	88450758	+	861.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	17.73	13.36	21.27	16.19	7.0	15.27	16.9	10.17	15.61
Merged-chr4-53218885-1	chr4	53218385	53219385	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27311.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	81.8	80.64	36.07	129.55	91.9	71.54	57.03	50.85	29.35
Merged-chr4-134628772-1	chr4	134628272	134629272	+	861.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-60921.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	14.3	5.07	3.7	24.29	16.33	6.43	7.39	6.19	2.5
Merged-chr9-116123756-3	chr9	116123244	116124244	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	Lx9|LINE|L1	51619.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	14.3	18.89	17.57	31.04	22.39	7.23	8.45	11.5	7.49
Merged-chr13-112466783-3	chr13	112466293	112467293	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2723.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	18.88	14.75	1.85	17.54	13.53	1.61	10.56	14.59	5.0
Merged-chr17-67213861-3	chr17	67213363	67214363	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	140596.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.29	5.07	1.85	6.75	3.73	6.43	6.34	7.52	8.74
Merged-chr10-84401329-3	chr10	84400834	84401834	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	39137.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	88.1	79.25	77.7	68.15	65.31	57.87	52.81	49.52	30.6
Merged-chr3-108283989-3	chr3	108283522	108284522	+	861.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271599)	promoter-TSS (NM_001271599)	-42.0	NM_001271599	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	24.6	10.6	8.32	8.77	6.53	3.22	3.17	0.88	1.25
Merged-chr9-56118722-2	chr9	56118225	56119225	+	861.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 3 of 14)	intron (NM_011193, intron 3 of 14)	28749.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	3.43	3.23	5.55	1.35	0.47	4.02	9.51	1.33	0.0
Merged-chr2-122452716-3	chr2	122452213	122453213	+	861.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 10 of 17)	ID_B1|SINE|B4	11893.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	12.59	26.26	16.65	20.24	16.79	28.13	9.51	8.84	19.36
Merged-chr3-144933244-3	chr3	144932748	144933748	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033199)	promoter-TSS (NM_001033199)	-719.0	NM_001033199	99709.0	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	11.44	6.45	9.25	21.59	22.39	36.17	30.63	19.01	14.36
Merged-chr19-28677440-6	chr19	28676931	28677931	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-793.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	36.61	28.11	22.2	61.4	35.45	45.82	22.18	12.82	8.74
Merged-chr9-50482908-3	chr9	50482399	50483399	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11626.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	7.44	7.37	9.25	4.72	7.46	14.47	5.28	8.84	5.0
Merged-chr5-135460360-3	chr5	135459844	135460844	+	861.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65798.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	60.07	60.36	101.74	78.27	49.92	97.26	70.76	90.2	59.95
Merged-chr3-135477073-3	chr3	135476581	135477581	+	861.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8530.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	13.16	10.14	3.7	13.49	12.6	12.86	5.28	7.52	11.87
Merged-chr14-47541874-2	chr14	47541388	47542388	+	861.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26546.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	26.31	23.04	31.45	31.71	26.59	30.54	89.78	90.2	47.46
Merged-chr13-104750053-2	chr13	104749575	104750575	+	861.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	66878.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	6.86	3.23	11.1	5.4	4.2	0.0	4.22	6.63	3.75
Merged-chr8-122283544-3	chr8	122283024	122284024	+	861.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	1383.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	14.87	6.45	0.92	4.72	1.87	8.84	6.34	7.52	14.36
Merged-chr1-93579063-3	chr1	93578560	93579560	+	861.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145519, intron 12 of 26)	intron (NM_145519, intron 12 of 26)	56667.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	10.3	11.06	29.6	6.07	7.0	7.23	11.62	8.84	11.24
Merged-chr13-97192843-2	chr13	97192334	97193334	+	861.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010422, intron 2 of 13)	intron (NM_010422, intron 2 of 13)	5523.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	8.58	10.6	9.25	24.29	11.66	16.08	13.73	7.52	5.62
Merged-chr19-11231501-2	chr19	11230991	11231991	+	861.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	intron (NR_045317, intron 1 of 2)	34660.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	4.0	5.99	8.32	22.27	11.66	21.7	21.12	14.15	15.61
Merged-chr14-50842708-3	chr14	50842221	50843221	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 28 of 54)	MTE2b|LTR|ERVL-MaLR	27833.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	47.48	47.0	34.22	56.68	43.39	54.66	84.49	91.53	52.46
Merged-chr1-131153159-3	chr1	131152654	131153654	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136070)	promoter-TSS (NM_001136070)	-53.0	NM_001136070	16865.0	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	25.74	28.11	20.35	33.74	19.59	12.86	28.52	19.9	17.49
Merged-chr4-119663187-3	chr4	119662700	119663700	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-4255.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	5.72	2.76	12.95	13.49	9.8	12.86	3.17	2.21	3.12
Merged-chr4-88862808-3	chr4	88862317	88863317	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	12730.0	NM_010502	15962.0	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	10.3	7.37	7.4	6.07	6.06	10.45	9.51	5.75	9.99
Merged-chr1-85987428-3	chr1	85986924	85987924	+	861.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-26369.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	43.48	33.18	37.0	43.86	26.12	32.96	63.37	98.16	39.35
Merged-chr4-126104904-3	chr4	126104374	126105374	+	861.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	917.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	112.12	98.15	92.5	83.66	68.58	67.52	76.05	68.09	51.84
Merged-chr4-98384753-3	chr4	98384266	98385266	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1501.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	8.01	5.53	7.4	9.45	3.27	3.22	8.45	7.52	2.5
Merged-chr1-144247091-3	chr1	144246615	144247615	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	1989.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	100.11	134.55	59.2	114.03	132.49	73.14	78.16	91.09	54.33
Merged-chr2-94267099-3	chr2	94266585	94267585	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5686.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	5.15	4.15	6.47	12.14	4.2	6.43	19.01	6.19	5.0
Merged-chr2-37426199-3	chr2	37425719	37426719	+	861.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146253, exon 2 of 2)	3' UTR (NM_146253, exon 2 of 2)	-3316.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	27.46	28.57	30.52	24.96	15.86	34.56	24.29	25.2	29.98
Merged-chr4-86886298-3	chr4	86885791	86886791	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 2 of 5)	intron (NM_001290543, intron 2 of 5)	11877.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	10.87	5.07	3.7	14.17	14.46	11.25	21.12	8.84	5.0
Merged-chr16-57528679-3	chr16	57528224	57529224	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-20518.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	36.04	33.64	38.85	47.23	38.25	49.03	21.12	19.9	29.98
Merged-chrX-95176002-1	chrX	95175502	95176502	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9463.0	NM_001033329	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	3.43	1.38	0.0	2.7	3.27	0.0	0.0	2.65	8.74
Merged-chr5-115538328-1	chr5	115537828	115538828	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-21139.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	107.55	111.51	114.69	89.06	72.31	128.61	129.91	133.53	94.3
Merged-chr2-45099241-2	chr2	45098780	45099780	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10997.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	53.77	68.66	59.2	51.95	59.25	53.05	68.65	78.26	37.47
Merged-chr1-172426976-3	chr1	172426453	172427453	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-48407.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	8.01	5.07	3.7	6.75	2.33	6.43	5.28	7.52	3.75
Merged-chr16-91416364-1	chr16	91415864	91416864	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008349, intron 4 of 6)	intron (NM_008349, intron 4 of 6)	10129.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	236.83	165.42	105.44	271.91	184.74	154.33	199.62	220.2	116.79
Merged-chr12-3807277-1	chr12	3806777	3807777	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	117.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	51.48	26.73	75.85	83.66	23.79	53.85	124.63	34.93	37.47
Merged-chr11-34695021-1	chr11	34694521	34695521	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033374, intron 17 of 51)	intron (NM_033374, intron 17 of 51)	88884.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	7.44	1.84	12.95	2.7	3.27	6.43	4.22	3.1	6.25
Merged-chr9-87144340-1	chr9	87143840	87144840	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177731)	promoter-TSS (NM_001177731)	34.0	NM_001101482	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	7.44	2.76	3.7	4.72	0.93	1.61	1.06	0.0	6.25
Merged-chr14-74977126-2	chr14	74976615	74977615	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	2029.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	8.01	3.69	3.7	8.1	6.53	6.43	6.34	2.21	6.25
Merged-chr14-122058067-1	chr14	122057567	122058567	+	861.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23393.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	4.58	2.3	1.85	4.72	6.53	4.82	4.22	0.88	3.75
Merged-chr17-45855771-1	chr17	45855271	45856271	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	25681.0	NR_152136	75154.0	Mm.399341	NR_152136		4930542M03Rik	-	RIKEN cDNA 4930542M03 gene	ncRNA	5.72	1.84	5.55	5.4	0.93	4.82	0.0	4.86	4.37
Merged-chr3-58636969-1	chr3	58636469	58637469	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081262, exon 1 of 14)	exon (NM_001081262, exon 1 of 14)	238.0	NM_001081262	545527.0	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	5.15	1.84	9.25	3.37	0.47	1.61	2.11	1.33	7.49
Merged-chr6-108825191-3	chr6	108824691	108825691	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3450.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	18.88	17.51	18.5	29.69	22.39	27.33	28.52	19.9	15.61
Merged-chr5-90656007-1	chr5	90655507	90656507	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15480.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	27.46	19.35	7.4	18.22	12.13	10.45	10.56	8.4	11.24
Merged-chr5-62616097-1	chr5	62615597	62616597	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 28 of 32)	intron (NM_178407, intron 28 of 32)	150080.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	9.72	6.45	6.47	6.75	7.0	4.02	8.45	7.96	9.99
Merged-chr5-39644656-2	chr5	39644070	39645070	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010474)	promoter-TSS (NM_010474)	61.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	2.86	0.0	0.0	3.37	0.0	1.61	1.06	1.33	4.37
Merged-chr12-40459100-2	chr12	40458595	40459595	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13042.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	17.73	22.12	22.2	24.96	16.79	16.08	15.84	22.55	21.86
Merged-chr8-79941202-1	chr8	79940702	79941702	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116806.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	6.29	3.69	0.0	5.4	2.8	4.02	6.34	0.0	3.75
Merged-chr10-78092890-2	chr10	78092403	78093403	+	861.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23535.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	12.01	6.91	7.4	2.7	5.6	4.82	11.62	12.82	7.49
Merged-chr2-6707455-1	chr2	6706955	6707955	+	861.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	14207.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	25.17	27.65	26.82	16.19	14.0	20.09	27.46	22.55	8.12
Merged-chr15-97824152-3	chr15	97823646	97824646	+	860.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	7621.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	49.2	29.95	26.82	35.09	28.92	20.09	22.18	9.73	9.37
Merged-chr11-116635617-2	chr11	116635120	116636120	+	860.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-8601.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	8.01	3.69	5.55	20.92	7.93	8.04	1.06	1.77	5.62
Merged-chr18-58568509-3	chr18	58568059	58569059	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	12319.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	19.45	35.94	29.6	43.18	37.79	45.01	20.07	15.92	19.36
Merged-chr10-79695430-3	chr10	79694914	79695914	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008504)	TTS (NM_008504)	1588.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	6.86	1.84	1.85	7.42	0.47	6.43	4.22	2.21	4.37
Merged-chr1-54586362-3	chr1	54585834	54586834	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28650.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	30.89	44.24	29.6	36.43	23.79	26.53	46.47	46.87	23.11
Merged-chr4-42947068-3	chr4	42946576	42947576	+	860.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2791.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	7.44	5.99	4.62	3.37	2.8	6.43	5.28	2.65	8.74
Merged-chr6-122491753-3	chr6	122491237	122492237	+	860.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5432.0	NM_027664	108653.0	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	3.43	3.69	2.77	3.37	5.6	4.82	3.17	4.86	2.5
Merged-chr10-19124939-3	chr10	19124442	19125442	+	860.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16807.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	14.3	5.99	7.4	9.45	6.06	5.63	11.62	4.86	9.99
Merged-chr6-51606440-2	chr6	51605941	51606941	+	860.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61148.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	37.76	13.82	19.42	29.01	18.19	48.23	33.8	26.97	21.86
Merged-chr9-106452389-2	chr9	106451892	106452892	+	860.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029631, exon 4 of 4)	3' UTR (NM_029631, exon 4 of 4)	-1446.0	NM_021567	59092.0	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	2.29	3.23	1.85	7.42	1.87	4.82	5.28	0.0	2.5
Merged-chr15-59811734-3	chr15	59811241	59812241	+	860.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16782.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	28.6	35.94	46.25	37.78	12.6	75.56	54.92	28.3	34.97
Merged-chr10-87841718-3	chr10	87841177	87842177	+	860.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16588.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	90.38	84.32	86.02	154.51	77.44	139.06	142.59	129.55	73.69
Merged-chr3-56183703-1	chr3	56183203	56184203	+	860.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030595)	promoter-TSS (NM_030595)	-2.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	2.86	3.23	1.85	5.4	7.0	4.82	1.06	3.1	1.25
Merged-chr4-134760967-4	chr4	134760515	134761515	+	860.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6989.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	70.93	51.15	49.02	78.27	54.58	69.13	89.78	78.71	54.33
Merged-chr8-71404929-2	chr8	71404433	71405433	+	860.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026636)	TTS (NM_026636)	-1079.0	NM_001310502	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	17.16	17.05	20.35	20.92	15.39	26.53	21.12	25.2	18.74
Merged-chr18-9380867-3	chr18	9380367	9381367	+	860.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	69287.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	21.74	14.75	14.8	18.89	29.39	17.68	23.24	13.27	16.86
Merged-chr8-40647955-2	chr8	40647466	40648466	+	860.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-13174.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.86	3.69	3.7	4.05	0.93	2.41	17.96	18.13	13.74
Merged-chr18-80713027-3	chr18	80712525	80713525	+	860.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164109)	promoter-TSS (NM_001164109)	46.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	16.59	13.36	3.7	16.19	8.4	4.82	20.07	7.96	5.0
Merged-chrX-159142314-1	chrX	159141814	159142814	+	860.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113468.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	2.86	3.69	1.85	4.72	7.93	1.61	3.17	3.98	2.5
Merged-chr9-7347349-3	chr9	7346828	7347828	+	860.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320076)	promoter-TSS (NM_001320076)	-46.0	NM_001320076	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	29.17	22.12	7.4	34.41	24.72	20.9	8.45	9.73	8.12
Merged-chr1-78489205-3	chr1	78488723	78489723	+	860.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102757)	promoter-TSS (NR_102757)	-326.0	NM_011811	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	80.66	108.75	86.95	68.15	102.63	91.63	114.07	99.49	40.59
Merged-chr2-12115721-2	chr2	12115232	12116232	+	860.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 28 of 29)	intron (NM_001001309, intron 28 of 29)	-185514.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	2.29	3.23	5.55	6.07	4.2	4.82	2.11	3.98	3.75
Merged-chr4-34730199-3	chr4	34729710	34730710	+	860.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027041)	promoter-TSS (NM_027041)	-4.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	5.72	1.38	0.0	4.72	1.4	6.43	2.11	2.21	5.62
Merged-chr5-75978355-1	chr5	75977855	75978855	+	860.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	73.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	2.29	2.3	4.62	3.37	2.8	1.61	1.06	0.44	3.75
Merged-chr13-112001326-1	chr13	112000826	112001826	+	860.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133390.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.0	3.69	0.0	6.75	11.66	3.22	3.17	4.86	3.75
Merged-chr3-51341843-3	chr3	51341338	51342338	+	860.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1194.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	75.51	60.36	59.2	118.75	62.98	75.56	91.89	80.92	47.46
Merged-chr1-55511735-3	chr1	55511226	55512226	+	860.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	105780.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	16.02	10.6	14.8	7.42	7.0	10.45	11.62	10.61	5.62
Merged-chr7-27408981-2	chr7	27408500	27409500	+	860.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_032610, exon 14 of 36)	exon (NM_032610, exon 14 of 36)	-12447.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	4.0	1.38	3.7	4.05	0.47	3.22	4.22	0.0	1.25
Merged-chr19-5751936-3	chr19	5751420	5752420	+	860.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008520, intron 16 of 27)	intron (NM_008520, intron 16 of 27)	11016.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	2.86	5.07	1.85	2.02	2.8	4.82	3.17	2.65	3.75
Merged-chr18-64962567-3	chr18	64962061	64963061	+	860.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-60966.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	17.73	11.98	14.8	19.57	18.66	1.61	24.29	36.7	19.98
Merged-chr2-72786068-2	chr2	72785597	72786597	+	860.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102349, intron 5 of 5)	intron (NR_102349, intron 5 of 5)	27620.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	17.73	17.97	22.2	10.12	3.73	8.04	67.6	76.49	34.97
Merged-chr19-56387932-3	chr19	56387418	56388418	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198059, intron 3 of 40)	intron (NM_198059, intron 3 of 40)	2120.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	11.44	9.68	11.1	26.31	21.93	7.23	23.24	25.2	12.49
Merged-chr1-23202845-3	chr1	23202324	23203324	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69445.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	41.19	64.97	37.0	26.31	47.12	37.78	31.69	37.58	34.35
Merged-chr10-13497328-3	chr10	13496826	13497826	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3702.0	NM_001330198	66848.0	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	13.73	11.06	11.1	14.17	7.46	9.65	11.62	7.96	6.25
Merged-chr4-132944929-3	chr4	132944439	132945439	+	860.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MARNA|DNA|TcMar-Mariner	-22388.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	116.13	67.27	73.07	222.66	192.2	139.86	210.18	196.32	84.31
Merged-chr15-25532257-2	chr15	25531757	25532757	+	860.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-90293.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	23.45	26.26	10.17	20.92	13.06	6.43	14.79	3.98	16.86
Merged-chr6-134245843-3	chr6	134245330	134246330	+	860.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	L1MEf|LINE|L1	-150499.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	53.2	52.07	29.6	39.81	20.99	17.68	41.19	42.01	11.87
Merged-chr11-69124236-3	chr11	69123751	69124751	+	860.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033041)	TTS (NM_033041)	-2126.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	76.66	88.01	66.6	79.62	55.98	68.32	79.21	94.18	64.33
Merged-chr9-64016702-3	chr9	64016204	64017204	+	860.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	5355.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	14.87	15.21	18.5	24.96	11.66	11.25	27.46	18.57	14.36
Merged-chr6-56652367-2	chr6	56651898	56652898	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	52301.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	9.72	6.45	4.62	9.45	3.73	4.02	11.62	8.84	3.75
Merged-chr1-64035979-1	chr1	64035479	64036479	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 3 of 3)	intron (NM_033563, intron 3 of 3)	6522.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	16.59	11.06	8.32	16.87	7.0	4.82	8.45	7.07	9.37
Merged-chr3-94851903-1	chr3	94851403	94852403	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	14336.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	10.87	4.61	4.62	10.8	5.13	5.63	9.51	4.42	5.0
Merged-chr10-81550381-2	chr10	81549870	81550870	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5324.0	NM_010301	14672.0	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	2.29	2.3	3.7	6.07	3.73	1.61	6.34	3.1	0.0
Merged-chr3-84570614-1	chr3	84570114	84571114	+	860.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293801, intron 1 of 7)	intron (NM_001293801, intron 1 of 7)	12011.0	NM_001293801	99889.0	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	22.31	36.4	36.07	15.52	20.06	22.51	29.57	32.28	36.85
Merged-chr3-116109527-1	chr3	116109027	116110027	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011693)	TTS (NM_011693)	20161.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	8.01	17.97	31.45	10.8	15.86	20.09	7.39	7.52	13.12
Merged-chr9-119220378-1	chr9	119219878	119220878	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_033303)	TTS (NR_033303)	-11273.0	NM_133980	102570.0	Mm.38775	NM_133980	ENSMUSG00000074028	Slc22a13	AI648912|OCTL1|OCTL3|ORCTL3	solute carrier family 22 (organic cation transporter), member 13	protein-coding	4.0	10.6	6.47	6.07	8.4	17.68	4.22	3.1	5.0
Merged-chr2-102754055-3	chr2	102753513	102754513	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-7253.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	84.66	110.13	86.02	71.52	46.18	56.27	52.81	58.81	55.58
Merged-chr4-100095885-1	chr4	100095385	100096385	+	860.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001312690)	promoter-TSS (NM_001312690)	94.0	NM_001312690	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	4.58	1.38	0.0	2.7	2.33	1.61	0.0	1.33	3.75
Merged-chr7-89236301-3	chr7	89235801	89236801	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	102486.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	41.19	53.45	38.85	58.7	63.45	40.99	44.36	43.77	23.11
Merged-chr15-86277560-3	chr15	86277045	86278045	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358062)	promoter-TSS (NM_001358062)	-130.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	25.17	9.68	14.8	53.3	44.78	43.4	29.57	21.22	7.49
Merged-chr1-36073823-2	chr1	36073325	36074325	+	860.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	5425.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	104.69	84.78	46.25	202.42	132.02	121.37	122.52	165.37	49.96
Merged-chr3-8964979-3	chr3	8964507	8965507	+	860.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025261)	promoter-TSS (NM_001025261)	-861.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	21.74	19.81	19.42	22.94	17.26	24.11	24.29	30.95	21.23
Merged-chr6-137473136-3	chr6	137472646	137473646	+	860.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	46749.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	10.3	7.37	0.0	6.75	7.46	12.86	9.51	1.77	2.5
Merged-chr12-55484100-3	chr12	55483609	55484609	+	860.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8538.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	8.58	5.53	3.7	4.72	2.8	0.0	6.34	4.42	8.74
Merged-chr2-68879814-3	chr2	68879302	68880302	+	860.4389039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	(TG)n|Simple_repeat|Simple_repeat	18361.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	11.44	11.52	14.8	8.77	13.53	15.27	19.01	8.84	24.36
Merged-chr1-9798043-4	chr1	9797479	9798479	+	860.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-151.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	179.05	170.95	212.74	172.73	131.56	94.04	198.56	136.63	94.3
Merged-chr13-83609354-3	chr13	83608838	83609838	+	860.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347569, intron 3 of 10)	intron (NM_001347569, intron 3 of 10)	35731.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	7.44	5.53	7.4	4.72	8.86	1.61	6.34	5.75	0.0
Merged-chr6-33859786-2	chr6	33859276	33860276	+	860.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 13 of 17)	MLT1J|LTR|ERVL-MaLR	-169672.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.58	10.14	1.85	6.75	12.13	19.29	12.67	16.8	8.74
Merged-chr2-73470586-2	chr2	73470082	73471082	+	860.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15171.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	23.45	21.66	9.25	18.22	21.46	24.92	39.08	18.57	20.61
Merged-chr10-130314299-3	chr10	130313779	130314779	+	860.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	13.16	14.28	3.7	4.72	7.0	9.65	7.39	9.29	3.75
Merged-chr7-102032084-3	chr7	102031580	102032580	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 4 of 8)	intron (NM_029211, intron 4 of 8)	-13925.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	93.24	98.15	65.67	84.34	86.3	98.06	125.69	130.88	126.78
Merged-chr9-58401917-3	chr9	58401449	58402449	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	31445.0	NR_040727	73529.0	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	3.43	3.23	0.92	4.72	3.73	1.61	4.22	4.86	3.75
Merged-chr12-118296419-3	chr12	118295906	118296906	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166385, intron 3 of 5)	intron (NM_001166385, intron 3 of 5)	5034.0	NM_009239	20688.0	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	49.77	64.97	24.05	59.38	74.17	24.11	63.37	81.8	35.6
Merged-chr10-94408875-3	chr10	94408372	94409372	+	860.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	96923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.72	6.45	6.47	10.12	1.87	9.65	3.17	2.65	5.62
Merged-chr6-87745406-3	chr6	87744923	87745923	+	860.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	14554.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	25.17	11.52	5.55	19.57	7.46	6.43	20.07	13.71	6.87
Merged-chr8-13840301-3	chr8	13839810	13840810	+	860.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2221.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	14.87	19.81	12.02	14.17	13.06	4.82	9.51	16.8	8.74
Merged-chr1-60669342-3	chr1	60668844	60669844	+	860.3777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77044.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	50.34	78.79	50.87	79.62	56.91	70.73	51.75	38.03	30.6
Merged-chr4-88788586-2	chr4	88788080	88789080	+	860.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161609).4	promoter-TSS (NM_001161609).4	-52.0	NM_001161609	545654.0	Mm.478784	NM_001161609	ENSMUSG00000095101	Gm13285	limitin	predicted gene 13285	protein-coding	3.43	0.46	0.0	0.0	0.0	0.0	0.0	2.21	0.0
Merged-chr5-122059692-3	chr5	122059173	122060173	+	860.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	22.88	13.82	9.25	23.62	18.19	7.23	23.24	20.34	6.25
Merged-chr2-145866794-2	chr2	145866277	145867277	+	860.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-36464.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	16.02	9.68	14.8	15.52	13.53	32.96	7.39	13.27	17.49
Merged-chr7-53433588-2	chr7	53433081	53434081	+	860.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	458308.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	5.15	4.15	9.25	6.75	7.93	6.43	4.22	7.07	9.99
Merged-chr19-10183505-2	chr19	10183013	10184013	+	860.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	625.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	52.06	48.84	69.37	43.86	57.85	77.97	26.4	10.61	21.86
Merged-chr11-96910213-2	chr11	96909724	96910724	+	860.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030248, intron 10 of 13)	intron (NM_030248, intron 10 of 13)	6290.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	4.58	1.84	3.7	2.02	1.87	0.0	4.22	2.21	1.87
Merged-chr10-127312417-3	chr10	127311914	127312914	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-628.0	NM_001171582	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	268.29	246.52	153.54	226.71	192.2	172.01	289.39	359.48	139.27
Merged-chr13-107639843-3	chr13	107639346	107640346	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-47551.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.29	2.3	1.85	4.72	1.87	1.61	2.11	0.0	8.74
Merged-chr16-44349563-1	chr16	44349063	44350063	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144550, intron 1 of 17)	intron (NM_144550, intron 1 of 17)	2162.0	NM_144550	212514.0	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	18.31	15.67	11.1	13.49	17.26	9.65	12.67	13.71	14.99
Merged-chr3-61367245-1	chr3	61366745	61367745	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028712, exon 1 of 1)	3' UTR (NM_028712, exon 1 of 1)	2738.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	5.72	9.22	13.87	20.24	7.46	10.45	15.84	12.82	6.87
Merged-chr2-32237380-3	chr2	32236872	32237872	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145145, exon 2 of 20)	exon (NM_145145, exon 2 of 20)	689.0	NM_145145	99011.0	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	26.89	23.96	31.45	26.31	22.39	32.15	24.29	33.16	20.61
Merged-chr5-62762523-1	chr5	62762023	62763023	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	3654.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	90.96	118.42	49.02	132.24	87.7	65.11	99.28	138.84	68.07
Merged-chr2-90487683-1	chr2	90487183	90488183	+	860.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-8509.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	33.75	35.02	43.47	40.48	21.93	18.49	63.37	56.6	40.59
Merged-chr12-103339817-3	chr12	103339308	103340308	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	16193.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	86.95	106.44	109.14	41.16	42.45	31.35	67.6	84.9	46.84
Merged-chr10-51491835-3	chr10	51491355	51492355	+	860.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291894, intron 3 of 8)	intron (NM_001291894, intron 3 of 8)	957.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	231.68	254.81	137.82	263.81	263.58	188.89	239.75	287.41	148.01
Merged-chr8-36746188-2	chr8	36745714	36746714	+	860.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-13160.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.01	11.06	7.4	11.47	10.26	16.08	2.11	3.1	5.62
Merged-chr15-100048358-3	chr15	100047851	100048851	+	860.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	9687.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	26.89	30.87	51.8	20.92	15.39	24.92	90.83	57.04	31.85
Merged-chr8-14813514-2	chr8	14813021	14814021	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	intron (NM_172910, intron 9 of 15)	-75015.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.72	4.15	1.85	5.4	4.67	0.0	1.06	5.75	3.12
Merged-chr8-84567128-2	chr8	84566562	84567562	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 20 of 47)	PB1|SINE|Alu	95790.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	40.04	56.68	43.47	93.79	72.31	73.95	4.22	3.54	1.87
Merged-chr2-113441585-3	chr2	113441078	113442078	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001285459, exon 1 of 17)	exon (NM_001285459, exon 1 of 17)	514.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	119.56	131.78	114.69	141.02	121.29	128.61	90.83	122.48	75.57
Merged-chr8-72295221-3	chr8	72294732	72295732	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-23830.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	142.44	142.84	108.22	216.58	147.88	141.47	128.85	149.89	100.55
Merged-chr12-35011718-2	chr12	35011229	35012229	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26968.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	8.58	2.76	1.85	8.77	3.73	3.22	7.39	2.21	1.25
Merged-chr7-83649066-1	chr7	83648566	83649566	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360088, intron 15 of 18)	intron (NM_001360088, intron 15 of 18)	6429.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	36.61	42.85	59.2	41.16	42.45	72.34	41.19	35.37	41.84
Merged-chr6-97343158-2	chr6	97342659	97343659	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 8 of 23)	intron (NM_145148, intron 8 of 23)	-90379.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	6.86	5.07	10.17	10.12	15.39	22.51	12.67	9.29	23.73
Merged-chr7-126652830-3	chr7	126652316	126653316	+	860.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029339, intron 1 of 9)	intron (NM_029339, intron 1 of 9)	3507.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	25.74	21.2	22.2	12.14	16.33	15.27	29.57	16.8	9.99
Merged-chr9-97106693-1	chr9	97106193	97107193	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138756, intron 1 of 6)	intron (NM_138756, intron 1 of 6)	4348.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	18.31	26.26	29.6	25.64	16.79	33.76	30.63	19.46	21.23
Merged-chr8-82356556-1	chr8	82356056	82357056	+	860.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	46030.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	14.87	19.81	19.42	31.71	20.53	16.88	8.45	2.65	5.0
Merged-chr2-11553052-3	chr2	11552548	11553548	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	881.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	155.03	170.95	113.77	174.75	209.46	177.64	197.51	179.96	74.32
Merged-chr10-84534049-3	chr10	84533505	84534505	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175451)	promoter-TSS (NM_175451)	-117.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	21.17	9.68	12.95	37.11	7.46	28.94	31.69	6.63	9.99
Merged-chr1-165724393-3	chr1	165723876	165724876	+	860.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16282.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	34.9	23.04	19.42	25.64	27.52	32.15	28.52	26.09	23.73
Merged-chr16-55686627-2	chr16	55686126	55687126	+	860.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL2|LINE|L1	135512.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.44	7.83	5.55	6.07	3.73	10.45	7.39	3.1	12.49
Merged-chr7-80455786-3	chr7	80455332	80456332	+	860.1889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 21 of 21)	B1_Mus1|SINE|Alu	-50396.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	9.72	13.82	22.2	13.49	16.33	19.29	5.28	10.17	11.24
Merged-chr15-75600316-1	chr15	75599816	75600816	+	860.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3686.0	NM_026730	68453.0	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	1.72	1.38	3.7	7.42	1.4	3.22	1.06	2.21	3.75
Merged-chr3-27939105-3	chr3	27938631	27939631	+	860.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164056, intron 1 of 26)	intron (NM_001164056, intron 1 of 26)	451.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	12.59	6.45	5.55	11.47	11.66	27.33	13.73	5.75	9.99
Merged-chr1-67033428-3	chr1	67032896	67033896	+	860.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190984, intron 3 of 9)	intron (NM_001190984, intron 3 of 9)	5438.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	16.02	11.98	14.8	20.92	10.26	20.09	10.56	5.75	8.74
Merged-chr12-40460001-2	chr12	40459499	40460499	+	860.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	13946.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	21.74	29.03	18.5	33.06	27.06	22.51	29.57	28.3	23.11
Merged-chr3-90293709-2	chr3	90293254	90294254	+	860.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23605.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	98.39	76.95	102.67	107.28	58.31	64.3	115.12	72.07	70.57
Merged-chr14-48896421-2	chr14	48895929	48896929	+	860.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	17556.0	NR_033783	66770.0	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	3.43	3.69	12.95	1.35	5.6	3.22	2.11	0.88	7.49
Merged-chr4-103321895-4	chr4	103321372	103322372	+	860.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025909, intron 3 of 8)	intron (NM_025909, intron 3 of 8)	8026.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	69.22	70.04	73.07	74.22	88.17	73.14	72.88	68.09	51.21
Merged-chr1-155494596-2	chr1	155494097	155495097	+	860.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32514.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	6.29	4.15	6.47	11.47	5.6	1.61	4.22	7.52	2.5
Merged-chr11-120457245-3	chr11	120456830	120457830	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152807)	promoter-TSS (NM_152807)	740.0	NM_001356385	66431.0	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	118.99	117.5	98.97	128.2	95.63	130.21	86.61	121.15	98.68
Merged-chr3-146500671-3	chr3	146500184	146501184	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027617)	promoter-TSS (NM_027617)	848.0	NM_010318	14707.0	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	190.49	259.42	178.52	192.97	221.59	158.35	186.94	282.54	169.87
Merged-chr13-83064917-3	chr13	83064415	83065415	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-366582.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	14.87	13.82	15.72	24.96	23.79	26.53	13.73	16.8	5.0
Merged-chr2-117180673-3	chr2	117180183	117181183	+	860.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_033524, exon 7 of 7)	3' UTR (NM_033524, exon 7 of 7)	-4444.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	6.29	3.69	0.92	6.07	2.8	3.22	0.0	1.77	8.74
Merged-chr11-33932813-2	chr11	33932319	33933319	+	860.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190886, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	-30194.0	NM_031169	16533.0	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	26.89	24.42	2.77	22.94	27.99	20.9	20.07	14.15	17.49
Merged-chr1-75234832-3	chr1	75234331	75235331	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1592.0	NM_001159884	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	7.44	5.99	0.92	10.8	7.93	1.61	8.45	6.63	7.49
Merged-chr10-93095986-3	chr10	93095470	93096470	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-14374.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	14.3	9.22	24.05	22.94	12.6	20.09	62.31	33.16	39.97
Merged-chr3-148987846-3	chr3	148987344	148988344	+	860.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-33209.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	17.73	5.53	10.17	20.92	13.06	14.47	8.45	5.31	3.75
Merged-chr15-90244120-3	chr15	90243610	90244610	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19750.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	15.45	9.22	12.95	0.67	0.47	4.82	7.39	9.29	6.25
Merged-chr18-31895004-1	chr18	31894504	31895504	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 17 of 21)	intron (NM_028866, intron 17 of 21)	16899.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	4.58	4.61	3.7	10.12	9.8	6.43	1.06	1.33	2.5
Merged-chr1-171409336-1	chr1	171408836	171409836	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005508, exon 12 of 12)	exon (NM_001005508, exon 12 of 12)	-1977.0	NM_001305678	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	53.77	66.81	33.3	27.66	30.79	32.15	38.02	30.95	34.97
Merged-chr16-92039030-1	chr16	92038530	92039530	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-19292.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	56.06	54.83	41.62	82.99	74.17	68.32	85.55	97.28	41.84
Merged-chr2-169958436-2	chr2	169957917	169958917	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	4770.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	20.02	37.78	8.32	51.28	30.32	29.74	33.8	32.28	29.98
Merged-chr9-26783615-2	chr9	26783106	26784106	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153803, intron 6 of 19)	Lx8|LINE|L1	22862.0	NM_001310768	244757.0	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	4.0	4.61	11.1	2.7	10.26	2.41	2.11	3.54	3.75
Merged-chr17-67359787-3	chr17	67359272	67360272	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5281.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.58	5.53	1.85	5.4	1.87	0.0	5.28	3.98	0.0
Merged-chr5-43876345-1	chr5	43875845	43876845	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MTE2b|LTR|ERVL-MaLR	7536.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	57.21	58.98	48.1	64.1	32.19	81.18	73.93	65.44	49.96
Merged-chr1-134725446-1	chr1	134724946	134725946	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355726, intron 1 of 8)	intron (NM_001355726, intron 1 of 8)	16146.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	1.72	3.23	1.85	6.07	0.93	1.61	0.0	2.21	3.12
Merged-chr4-136450477-1	chr4	136449977	136450977	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19284.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	57.21	35.94	31.45	87.71	63.45	93.24	22.18	11.94	9.37
Merged-chr8-35718548-1	chr8	35718048	35719048	+	860.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108011.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.57	1.84	1.85	0.67	1.87	3.22	12.67	7.52	8.74
Merged-chr16-45408841-1	chr16	45408341	45409341	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	212.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.58	4.15	3.7	6.07	2.8	0.0	5.28	2.21	5.0
Merged-chr11-84351468-3	chr11	84350966	84351966	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	156028.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	44.62	36.86	47.17	53.3	44.32	65.11	65.48	57.92	50.59
Merged-chr8-40294020-2	chr8	40293511	40294511	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7058.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	30.32	9.68	0.0	31.71	20.53	8.04	7.39	6.63	4.37
Merged-chr4-101720720-1	chr4	101720220	101721220	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146146, intron 1 of 18)	intron (NM_146146, intron 1 of 18)	3313.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.58	10.6	9.25	27.66	23.79	26.53	8.45	11.94	12.49
Merged-chr1-152605702-1	chr1	152605202	152606202	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	B4A|SINE|B4	19515.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	23.45	30.41	22.2	42.51	23.79	16.08	36.97	34.49	19.36
Merged-chr11-63097454-3	chr11	63096936	63097936	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31546.0	NM_001302258	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.58	5.53	5.55	30.36	11.66	13.66	47.53	45.54	31.23
Merged-chr5-32013242-2	chr5	32012746	32013746	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-123226.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	78.94	73.26	51.8	58.7	18.66	17.68	65.48	39.35	18.74
Merged-chr19-18643456-1	chr19	18642956	18643956	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 7 of 8)	intron (NM_145497, intron 7 of 8)	11440.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	18.88	7.83	3.7	31.71	14.0	12.86	1.06	3.54	3.75
Merged-chr3-101600051-1	chr3	101599551	101600551	+	860.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	4656.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	97.25	130.4	88.8	119.43	65.78	94.85	101.39	79.15	98.05
Merged-chr6-38478540-1	chr6	38478040	38479040	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177185, intron 7 of 16)	intron (NM_177185, intron 7 of 16)	-28785.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	10.3	8.75	3.7	10.8	12.6	9.65	12.67	8.4	9.99
Merged-chr13-29979438-1	chr13	29978938	29979938	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	4953.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	5.15	7.37	5.55	6.07	4.67	20.9	15.84	7.96	6.25
Merged-chr6-72163344-3	chr6	72162877	72163877	+	860.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40180.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	106.4	162.2	96.2	136.29	112.9	145.49	140.47	182.62	99.3
Merged-chr6-38650752-2	chr6	38650257	38651257	+	860.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12312.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	2.86	2.3	0.0	1.35	2.33	1.61	1.06	0.44	3.75
Merged-chr5-3432762-3	chr5	3432250	3433250	+	859.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	88857.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	39.47	54.83	35.15	43.86	45.72	36.17	51.75	77.82	39.97
Merged-chr15-103324158-3	chr15	103323661	103324661	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 2 of 7)	intron (NM_001356627, intron 2 of 7)	10177.0	NM_001356627	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	25.74	22.12	38.85	21.59	11.66	16.88	26.4	34.49	26.23
Merged-chr1-37317312-3	chr1	37316821	37317821	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	17483.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	30.32	24.42	36.07	14.84	18.19	17.68	26.4	14.15	13.74
Merged-chr16-48992617-3	chr16	48992110	48993110	+	859.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027341, intron 1 of 30)	intron (NM_027341, intron 1 of 30)	1502.0	NM_027341	224170.0	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	53.77	43.77	36.07	50.6	39.65	27.33	45.42	58.37	20.61
Merged-chr4-40853213-3	chr4	40852807	40853807	+	859.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	1230.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	259.14	226.25	202.56	210.51	198.73	166.38	327.42	337.82	154.26
Merged-chr4-11929572-3	chr4	11929063	11930063	+	859.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36150.0	NM_001098231	381511.0	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	3.43	2.76	3.7	6.07	7.46	3.22	0.0	6.19	2.5
Merged-chr7-142444325-3	chr7	142443809	142444809	+	859.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009405)	TTS (NM_009405)	1841.0	NM_009405	21953.0	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	19.45	11.98	19.42	14.17	8.4	6.43	14.79	12.82	13.74
Merged-chr9-64774532-3	chr9	64774016	64775016	+	859.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36495.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	66.93	57.6	50.87	109.98	62.51	85.2	45.42	41.12	23.73
Merged-chr7-24270386-2	chr7	24269887	24270887	+	859.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009567)	promoter-TSS (NM_009567)	-31.0	NM_009567	22755.0	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	6.86	4.61	5.55	6.75	2.33	10.45	3.17	2.21	6.87
Merged-chr1-74506587-2	chr1	74506024	74507024	+	859.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310662)	promoter-TSS (NM_001310662)	464.0	NM_021383	58184.0	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	139.01	162.2	130.42	99.86	145.55	110.92	154.2	123.36	109.29
Merged-chr12-8942041-5	chr12	8941556	8942556	+	859.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5873.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	23.45	44.24	27.75	23.62	24.26	65.11	45.42	44.66	46.22
Merged-chr1-64530185-2	chr1	64529689	64530689	+	859.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2615.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	17.16	8.75	6.47	10.8	8.86	11.25	14.79	3.98	13.74
Merged-chr13-21279729-2	chr13	21279211	21280211	+	859.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Arg-CGA|tRNA|tRNA	12975.0	NM_010343	14780.0	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	5.72	5.99	3.7	0.67	3.27	6.43	3.17	0.44	1.25
Merged-chr15-64052191-3	chr15	64051692	64052692	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	7572.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	25.17	28.57	42.55	23.62	21.93	31.35	28.52	25.65	42.47
Merged-chr10-127342475-3	chr10	127341973	127342973	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010296)	promoter-TSS (NM_010296)	-894.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	2.86	5.53	3.7	12.82	4.2	2.41	4.22	0.44	1.87
Merged-chr3-61595766-3	chr3	61595262	61596262	+	859.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	231255.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	12.59	8.29	10.17	10.12	3.27	4.82	9.51	3.98	8.12
Merged-chr6-113691239-2	chr6	113690721	113691721	+	859.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 11 of 11)	intron (NM_001113553, intron 11 of 11)	-5829.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	21.74	14.75	12.95	26.31	30.79	31.35	21.12	18.13	19.36
Merged-chr17-8801098-5	chr17	8800525	8801525	+	859.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011866)	promoter-TSS (NM_011866)	-720.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	26.89	15.67	11.1	39.81	27.52	28.13	6.34	4.86	5.0
Merged-chr4-137594791-3	chr4	137594288	137595288	+	859.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 1 of 26)	CpG	616.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	200.22	199.98	241.41	177.45	148.82	188.09	188.0	173.33	135.52
Merged-chr17-50361881-3	chr17	50361370	50362370	+	859.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68250.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	4.58	4.61	3.7	4.72	2.33	6.43	7.39	3.98	8.12
Merged-chr18-46153836-3	chr18	46153328	46154328	+	859.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	44990.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	6.29	3.23	1.85	9.45	4.67	6.43	8.45	9.29	6.25
Merged-chr1-170950803-2	chr1	170950283	170951283	+	859.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-23200.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	14.87	5.99	6.47	45.88	23.33	46.62	77.1	92.41	58.71
Merged-chr14-64633569-3	chr14	64633031	64634031	+	859.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19000.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	22.88	23.04	27.75	25.64	26.12	33.76	23.24	16.36	13.74
Merged-chr2-118700360-3	chr2	118699855	118700855	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081971, exon 1 of 1)	3' UTR (NM_001081971, exon 1 of 1)	3608.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	7.44	2.3	0.0	6.75	2.33	0.0	1.06	3.98	0.0
Merged-chr5-32761877-1	chr5	32761377	32762377	+	859.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15535.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.72	4.15	3.7	6.75	1.4	1.61	2.11	3.98	11.87
Merged-chr16-94774154-1	chr16	94773654	94774654	+	859.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025584, intron 3 of 4)	intron (NM_001025584, intron 3 of 4)	82536.0	NM_001025590	16522.0	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	1.72	2.3	2.77	2.7	2.33	1.61	1.06	2.21	6.25
Merged-chr9-24510682-3	chr9	24510175	24511175	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7535.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	20.02	23.96	26.82	31.71	24.72	25.72	32.74	23.43	21.23
Merged-chr2-129310829-3	chr2	129310326	129311326	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010554)	promoter-TSS (NM_010554)	-854.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	125.85	105.98	123.94	145.74	91.44	161.56	107.73	104.35	99.92
Merged-chr13-60605649-1	chr13	60605149	60606149	+	859.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3438.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	49.2	68.2	36.07	39.13	30.32	69.13	34.85	35.82	21.86
Merged-chr7-80883231-3	chr7	80882699	80883699	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18070.0	NR_152101	71968.0	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	7.44	5.07	4.62	2.02	8.4	3.22	9.51	7.96	4.37
Merged-chr12-100004828-3	chr12	100004333	100005333	+	859.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M3|LINE|L1	40334.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	70.93	60.36	74.92	90.41	88.17	65.91	85.55	90.64	55.58
Merged-chr11-97661863-2	chr11	97661364	97662364	+	859.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1548.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	123.56	121.65	72.15	86.36	66.71	73.95	117.24	108.77	61.83
Merged-chr3-144688431-2	chr3	144687949	144688949	+	859.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	31886.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	40.04	27.65	7.4	58.7	25.19	21.7	7.39	9.73	2.5
Merged-chr4-117042690-2	chr4	117042200	117043200	+	859.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111277, intron 3 of 11)	B1_Mur3|SINE|Alu	23298.0	NM_001111277	108067.0	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	36.61	79.25	49.95	76.92	65.78	63.5	62.31	94.18	56.21
Merged-chr3-51208885-3	chr3	51208374	51209374	+	859.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	-15573.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	21.74	11.52	20.35	16.19	14.46	12.86	7.39	5.31	9.99
Merged-chr15-59760304-2	chr15	59759808	59760808	+	859.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34651.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	18.31	8.29	7.4	22.27	16.33	29.74	21.12	5.31	4.37
Merged-chr4-132380950-3	chr4	132380452	132381452	+	859.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161797, intron 3 of 12)	intron (NM_001161797, intron 3 of 12)	-27266.0	NR_003270	399101.0	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	29.75	28.57	28.67	20.92	16.79	26.53	34.85	35.82	27.48
Merged-chr6-94222434-1	chr6	94221934	94222934	+	859.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	15008.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	1.14	3.69	1.85	39.13	19.59	8.04	3.17	2.65	2.5
Merged-chr2-156411495-2	chr2	156411002	156412002	+	859.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-9407.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	6.86	2.76	5.55	2.02	2.8	4.02	2.11	5.31	1.25
Merged-chr9-121641612-3	chr9	121641112	121642112	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026915)	promoter-TSS (NM_026915)	-19.0	NM_026915	69032.0	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	31.46	26.26	11.1	26.99	15.86	12.86	42.25	23.88	9.37
Merged-chr6-39779407-3	chr6	39778936	39779936	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31500.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	85.24	141.46	95.27	88.39	90.5	92.44	91.89	120.27	85.56
Merged-chr19-11375454-3	chr19	11374936	11375936	+	859.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310331)	promoter-TSS (NM_001310331)	-52.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	28.03	29.49	24.97	45.21	55.05	66.71	17.96	21.67	15.61
Merged-chr16-70353171-2	chr16	70352626	70353626	+	859.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	(GGA)n|Simple_repeat|Simple_repeat	39177.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	11.44	4.15	5.55	10.12	12.13	5.63	14.79	8.84	10.62
Merged-chr4-127015792-3	chr4	127015282	127016282	+	859.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5519.0	NR_045010	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	3.43	0.46	1.85	1.35	1.87	1.61	68.65	78.71	41.22
Merged-chrX-12873885-3	chrX	12873366	12874366	+	859.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-63007.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	4.58	3.23	0.0	4.05	5.13	9.65	11.62	3.1	6.25
Merged-chr1-131092407-3	chr1	131091905	131092905	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	5438.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	25.74	23.5	18.5	18.22	12.6	13.66	22.18	18.57	26.85
Merged-chr6-116050786-1	chr6	116050286	116051286	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-55781.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	22.88	25.34	14.8	37.11	26.12	23.31	30.63	15.92	8.74
Merged-chr13-97249182-2	chr13	97248687	97249687	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	8082.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	10.3	5.07	10.17	4.05	7.46	3.22	3.17	3.54	3.75
Merged-chr2-59339794-2	chr2	59339211	59340211	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46971.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	48.62	59.44	42.55	107.95	109.16	86.01	49.64	52.18	27.48
Merged-chr1-105863122-2	chr1	105862614	105863614	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	82391.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	6.86	2.76	3.7	0.67	3.27	4.82	3.17	0.88	2.5
Merged-chr19-53536306-2	chr19	53535808	53536808	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6990.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	6.86	4.61	3.7	12.14	7.46	13.66	5.28	3.1	5.0
Merged-chr16-77002672-1	chr16	77002172	77003172	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8209.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	2.86	1.84	1.85	0.67	7.93	0.0	0.0	6.63	3.75
Merged-chr3-8619495-1	chr3	8618995	8619995	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8556.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	2.29	2.76	2.77	4.05	3.27	4.02	5.28	2.21	2.5
Merged-chr7-43563455-3	chr7	43562962	43563962	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	1092.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	68.65	54.37	46.25	50.6	54.11	57.07	88.72	80.92	45.59
Merged-chrX-57293678-1	chrX	57293178	57294178	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 4 of 20)	intron (NM_001358573, intron 4 of 20)	32923.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	6.86	7.37	3.7	7.42	7.46	8.04	6.34	3.1	7.49
Merged-chr16-38095629-2	chr16	38095073	38096073	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	B2_Mm2|SINE|B2	-6313.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	32.61	40.55	41.62	31.71	20.53	30.54	45.42	30.51	29.35
Merged-chr1-161071512-2	chr1	161071016	161072016	+	859.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172644)	promoter-TSS (NM_172644)	749.0	NR_131029	70454.0	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	56.06	74.19	51.8	41.16	47.58	49.03	85.55	110.1	50.59
Merged-chr11-110436337-2	chr11	110435847	110436847	+	859.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MER20|DNA|hAT-Charlie	37245.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	14.3	6.91	18.5	4.05	0.47	5.63	14.79	10.61	13.74
Merged-chr17-31071067-3	chr17	31070590	31071590	+	859.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	13396.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	61.78	64.51	59.2	113.35	64.38	91.63	86.61	95.51	51.21
Merged-chr11-117949872-3	chr11	117949372	117950372	+	859.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19494.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	56.63	35.02	29.6	56.0	34.52	42.6	35.91	32.72	20.61
Merged-chr2-103969305-6	chr2	103968798	103969798	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142335)	promoter-TSS (NM_001142335)	-259.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	288.32	334.99	219.21	278.66	266.84	194.52	264.05	321.9	154.88
Merged-chr3-94658852-3	chr3	94658350	94659350	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011656)	promoter-TSS (NM_011656)	22.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	2.29	0.92	0.92	1.35	0.0	0.8	4.22	1.33	3.75
Merged-chr5-135667011-3	chr5	135666500	135667500	+	859.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-22145.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	4.0	8.29	3.7	10.8	6.53	20.9	0.0	5.31	11.24
Merged-chr18-82942944-3	chr18	82942454	82943454	+	859.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	-22394.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	6.86	7.83	8.32	8.77	8.4	10.45	3.17	5.31	5.0
Merged-chr8-108911707-3	chr8	108911230	108912230	+	859.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-25130.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	53.77	61.28	32.37	77.59	76.04	47.42	54.92	61.46	16.86
Merged-chr14-106669512-3	chr14	106669013	106670013	+	859.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182993.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	17.73	31.79	32.37	35.76	31.26	35.37	41.19	29.18	22.48
Merged-chr11-70490399-3	chr11	70489876	70490876	+	859.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-14898.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	100.68	70.96	49.95	116.73	77.44	91.63	74.99	83.13	42.47
Merged-chr5-150665017-2	chr5	150664568	150665568	+	859.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 1 of 7)	intron (NM_001362416, intron 1 of 7)	544.0	NM_001362416	381695.0	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|Gm38758|zag1	NEDD4 binding protein 2-like 2	protein-coding	169.9	187.54	161.87	151.14	167.48	133.43	209.12	206.49	127.4
Merged-chr19-41402226-2	chr19	41401758	41402758	+	859.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17188.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	114.41	85.25	90.65	111.33	64.84	113.33	124.63	105.24	52.46
Merged-chr10-77253010-2	chr10	77252510	77253510	+	859.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6213.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	3.43	1.38	0.0	6.07	3.27	0.0	3.17	0.44	8.12
Merged-chr1-58423550-3	chr1	58423018	58424018	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042634, intron 1 of 12)	CpG	570.0	NR_027854	12747.0	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	597.22	889.31	465.25	628.84	834.12	533.72	512.25	688.45	364.1
Merged-chr18-83430875-1	chr18	83430375	83431375	+	859.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104991.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	4.0	2.3	3.7	10.8	4.67	12.06	10.56	3.54	6.25
Merged-chr2-57117740-3	chr2	57117245	57118245	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	-2707.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	10.3	2.76	3.7	20.92	4.2	12.86	16.9	8.84	7.49
Merged-chr9-71896103-3	chr9	71895612	71896612	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253864)	promoter-TSS (NM_001253864)	-16.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	107.55	108.75	44.4	96.48	96.57	58.68	124.63	160.51	38.1
Merged-chr4-24619915-3	chr4	24619428	24620428	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355618, intron 9 of 9)	RMER15|LTR|ERVL	123477.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	13.16	18.43	28.67	16.87	8.86	22.51	17.96	21.22	28.73
Merged-chr7-19956692-3	chr7	19956177	19957177	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5934.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	4.0	1.38	1.85	4.72	3.27	3.22	1.06	0.44	0.0
Merged-chr5-118556516-3	chr5	118556009	118557009	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4210.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	10.3	9.68	4.62	14.84	8.86	4.82	8.45	4.86	11.24
Merged-chr15-36164916-3	chr15	36164418	36165418	+	859.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081253)	promoter-TSS (NM_001081253)	-34.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	8.58	2.3	1.85	16.87	5.13	2.41	7.39	3.1	2.5
Merged-chr6-88832112-3	chr6	88831609	88832609	+	859.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9826.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	28.6	29.03	39.77	26.31	18.66	16.88	19.01	34.05	14.99
Merged-chr2-171329075-3	chr2	171328571	171329571	+	859.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	597264.0	NM_001163686	76829.0	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	5.72	9.68	7.4	13.49	7.0	6.43	7.39	10.17	6.87
Merged-chr1-84321572-3	chr1	84321052	84322052	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-36907.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	23.45	20.27	20.35	13.49	23.33	49.03	19.01	20.34	13.12
Merged-chr17-5397647-3	chr17	5397154	5398154	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21113.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.58	2.3	0.0	1.35	3.27	1.61	2.11	0.88	3.75
Merged-chr7-75782668-3	chr7	75782160	75783160	+	859.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65678.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	90.38	137.77	109.14	95.14	89.57	85.2	132.02	140.17	108.67
Merged-chr8-106165565-3	chr8	106165078	106166078	+	859.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133792)	TTS (NM_133792)	-3276.0	NR_151676	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	8.58	6.45	17.57	8.1	2.8	3.22	6.34	6.19	8.12
Merged-chr14-56034610-3	chr14	56034108	56035108	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4113.0	NM_010782	17232.0	Mm.436621	NM_010782	ENSMUSG00000071361	Mcpt9	MMCP-1|MMCP-9|MMCP9	mast cell protease 9	protein-coding	6.86	1.84	5.55	2.02	2.8	1.61	5.28	3.1	11.24
Merged-chr2-91987729-3	chr2	91987228	91988228	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011957, intron 8 of 11)	intron (NM_011957, intron 8 of 11)	-24165.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	5.72	3.23	1.85	2.02	2.33	1.61	2.11	0.44	5.0
Merged-chr13-44996499-2	chr13	44995992	44996992	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	5604.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	22.88	28.57	35.15	29.01	20.53	19.29	47.53	39.8	18.11
Merged-chr12-110908018-2	chr12	110907519	110908519	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175336, intron 3 of 20)	intron (NM_175336, intron 3 of 20)	18755.0	NM_001081057	104859.0	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	27.46	19.35	37.92	24.96	22.86	32.15	9.51	16.36	15.61
Merged-chr5-5243783-1	chr5	5243283	5244283	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 3 of 14)	intron (NM_011074, intron 3 of 14)	22285.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.86	4.15	3.7	3.37	2.33	4.82	7.39	1.77	5.0
Merged-chr5-105056258-3	chr5	105055748	105056748	+	859.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-2687.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	28.6	29.03	18.5	17.54	16.79	12.86	22.18	23.88	17.49
Merged-chr17-44351557-2	chr17	44351056	44352056	+	859.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162984.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	1.72	2.3	1.85	14.84	8.4	10.45	12.67	4.42	4.37
Merged-chr4-6369961-3	chr4	6369463	6370463	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	4283.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	93.82	115.2	86.02	128.2	111.03	138.25	132.02	150.34	66.2
Merged-chr1-181015720-3	chr1	181015213	181016213	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010145, intron 1 of 8)	intron (NM_010145, intron 1 of 8)	1856.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	194.5	172.33	122.09	168.68	132.49	147.09	203.84	239.65	101.8
Merged-chr9-75558565-3	chr9	75558076	75559076	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	(T)n|Simple_repeat|Simple_repeat	1081.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	62.93	90.77	53.65	85.69	61.11	73.14	85.55	87.11	55.58
Merged-chr10-7820393-3	chr10	7819902	7820902	+	859.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-12068.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	28.6	30.41	24.05	24.29	14.93	28.13	17.96	14.59	12.49
Merged-chr7-19876504-3	chr7	19876007	19877007	+	859.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11458.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	75.51	47.0	23.12	64.77	54.11	45.82	94.0	74.28	39.35
Merged-chr3-133526527-3	chr3	133525994	133526994	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	L1MCa|LINE|L1	17896.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	34.32	36.86	22.2	34.41	29.86	22.51	30.63	34.05	11.87
Merged-chr6-117900834-3	chr6	117900330	117901330	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	490.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	21.74	14.28	29.6	29.69	16.79	36.17	17.96	20.78	30.6
Merged-chr1-127207310-3	chr1	127206780	127207780	+	859.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	2294.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	44.62	33.64	37.0	44.53	28.92	24.92	66.54	64.56	30.6
Merged-chr18-5764420-2	chr18	5763919	5764919	+	859.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360982, intron 5 of 7)	intron (NM_001360982, intron 5 of 7)	171772.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	79.52	87.55	56.42	43.86	28.46	26.53	48.58	57.48	31.23
Merged-chr5-65484126-3	chr5	65483610	65484610	+	859.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	MLT-int|LTR|ERVL-MaLR	8725.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	5.15	4.61	2.77	6.07	0.93	5.63	6.34	7.07	6.25
Merged-chr5-135914402-3	chr5	135913898	135914898	+	859.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	20243.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	82.38	81.56	40.7	163.96	136.69	124.59	89.78	83.57	51.84
Merged-chr4-87368288-3	chr4	87367795	87368795	+	859.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137755.0	NM_172426	76376.0	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	5.15	3.23	0.92	5.4	4.67	3.22	5.28	0.44	3.12
Merged-chr12-85345081-3	chr12	85344584	85345584	+	859.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5722.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	222.53	246.98	183.14	222.66	196.4	195.32	268.27	378.94	157.38
Merged-chr12-59133794-2	chr12	59133293	59134293	+	859.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165253, intron 1 of 22)	intron (NM_001165253, intron 1 of 22)	2340.0	NM_001165253	338320.0	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	46.34	68.66	68.45	39.81	37.79	47.42	53.87	61.46	34.35
Merged-chr13-48552572-3	chr13	48552138	48553138	+	859.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	25.74	32.25	32.37	21.59	29.39	35.37	29.57	26.97	26.85
Merged-chr6-83689604-3	chr6	83689116	83690116	+	859.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11759.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	5.15	7.37	3.7	12.82	4.2	6.43	8.45	6.19	11.24
Merged-chr6-47757832-4	chr6	47757400	47758400	+	859.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4975.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.0	0.0	3.7	2.02	2.33	0.0	33.8	8.84	3.75
Merged-chr19-10291949-3	chr19	10291456	10292456	+	859.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	12921.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	21.74	7.37	12.95	16.87	14.0	9.65	8.45	3.54	17.49
Merged-chr1-91366360-3	chr1	91365846	91366846	+	859.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173395)	promoter-TSS (NM_173395)	-84.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	2.29	1.38	1.85	4.05	1.4	2.41	3.17	0.44	5.0
Merged-chr17-62784107-3	chr17	62783582	62784582	+	859.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	97235.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	2.86	1.84	1.85	2.02	2.33	1.61	6.34	0.0	2.5
Merged-chr11-11707011-1	chr11	11706511	11707511	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025597, intron 2 of 7)	intron (NM_001025597, intron 2 of 7)	16834.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	11.44	11.98	7.4	12.14	13.06	24.92	8.45	7.52	13.74
Merged-chr10-52284748-2	chr10	52284242	52285242	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025705, intron 3 of 10)	intron (NM_025705, intron 3 of 10)	51123.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	6.29	6.91	5.55	13.49	9.8	11.25	5.28	2.21	1.25
Merged-chr13-75878103-1	chr13	75877603	75878603	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028493, intron 9 of 11)	intron (NM_028493, intron 9 of 11)	38217.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	6.86	4.15	1.85	0.67	1.87	3.22	5.28	3.1	0.0
Merged-chr2-167760944-1	chr2	167760444	167761444	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69767.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	248.27	295.82	240.49	267.86	298.1	350.45	294.68	293.6	158.01
Merged-chr5-53880943-1	chr5	53880443	53881443	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144517, intron 15 of 20)	intron (NM_144517, intron 15 of 20)	71316.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	4.0	5.53	1.85	14.84	19.13	12.06	3.17	1.77	5.0
Merged-chr10-4079399-1	chr10	4078899	4079899	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 20 of 27)	intron (NM_001170785, intron 20 of 27)	106324.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	53.2	70.96	39.77	76.24	100.3	109.32	40.14	40.68	33.1
Merged-chr6-131354599-1	chr6	131354099	131355099	+	859.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33851.0	NM_139117	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	7.44	1.84	1.85	4.05	2.33	3.22	1.06	1.77	0.0
Merged-chr13-37847765-2	chr13	37847264	37848264	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	20371.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	20.59	21.66	28.67	24.29	22.39	26.53	19.01	8.84	14.99
Merged-chr7-4478755-1	chr7	4478255	4479255	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026146, intron 19 of 19)	intron (NM_026146, intron 19 of 19)	-7871.0	NR_028416	320749.0	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	1.14	1.38	5.55	5.4	3.27	4.82	4.22	0.44	3.75
Merged-chr19-32939918-1	chr19	32939418	32940418	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182341.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	14.3	9.22	12.95	14.84	12.13	15.27	17.96	12.38	14.36
Merged-chr5-139381446-1	chr5	139380946	139381946	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	807.0	NM_030258	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	221.38	214.26	162.79	331.96	337.29	208.98	240.81	311.73	146.14
Merged-chr10-27366236-1	chr10	27365736	27366736	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 5 of 63)	intron (NM_008481, intron 5 of 63)	-23630.0	NR_131034	75855.0	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	7.44	5.53	3.7	8.77	9.8	14.47	3.17	1.77	6.25
Merged-chr12-78901680-3	chr12	78901189	78902189	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013738, intron 1 of 8)	intron (NM_013738, intron 1 of 8)	5249.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	2.29	2.76	5.55	0.67	0.47	4.82	6.34	3.54	3.75
Merged-chr11-82099394-1	chr11	82098894	82099894	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-2451.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	60.07	44.7	34.22	63.42	32.66	38.58	94.0	108.77	28.1
Merged-chr12-111401623-1	chr12	111401123	111402123	+	859.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5186.0	NM_001101503	380787.0	Mm.125602	NM_001101503	ENSMUSG00000087075	Lbhd2	A230065H16Rik|Gm898|Lbh2	LBH domain containing 2	protein-coding	0.57	4.15	1.85	2.7	3.73	4.02	0.0	0.44	0.0
Merged-chr14-101658375-1	chr14	101657875	101658875	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	intron (NM_016723, intron 2 of 8)	4408.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	2.29	2.3	5.55	6.75	1.87	9.65	4.22	2.65	7.49
Merged-chr9-100382666-1	chr9	100382166	100383166	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103807.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	2.86	2.76	3.7	3.37	0.47	3.22	2.11	2.21	3.12
Merged-chr10-5057111-1	chr10	5056611	5057611	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079686, intron 41 of 54)	intron (NM_001079686, intron 41 of 54)	11952.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	8.01	4.61	14.8	2.7	6.06	11.25	6.34	4.86	5.0
Merged-chr9-5299321-1	chr9	5298821	5299821	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009807, exon 2 of 10)	exon (NM_009807, exon 2 of 10)	804.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	253.42	274.63	124.87	184.87	196.87	118.16	228.14	252.04	132.4
Merged-chr2-130783929-1	chr2	130783429	130784429	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029432, intron 12 of 36)	intron (NM_029432, intron 12 of 36)	20172.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	3.43	5.07	4.62	54.65	57.38	36.97	4.22	2.65	0.0
Merged-chr2-121866939-1	chr2	121866439	121867439	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205371)	promoter-TSS (NM_001205371)	-31.0	NM_199038	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	2.29	1.84	1.85	6.07	3.27	4.02	4.22	1.77	3.75
Merged-chr10-93375149-3	chr10	93374654	93375654	+	859.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38943.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	35.47	31.33	14.8	56.68	22.39	27.33	6.34	8.84	7.49
Merged-chr10-99393244-2	chr10	99392752	99393752	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130021.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	14.3	6.91	1.85	7.42	5.13	5.63	15.84	8.4	5.0
Merged-chr7-98605803-1	chr7	98605303	98606303	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172280, intron 14 of 19)	intron (NM_172280, intron 14 of 19)	50766.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	2.86	2.3	1.85	10.12	4.67	1.61	9.51	4.42	3.12
Merged-chr11-16670456-2	chr11	16669929	16670929	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81774.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	10.3	8.29	2.77	8.77	9.8	13.66	9.51	15.03	15.61
Merged-chr11-76630258-1	chr11	76629758	76630758	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42212.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	48.62	29.95	24.97	45.88	13.53	33.76	64.43	51.73	33.1
Merged-chr19-38394784-1	chr19	38394284	38395284	+	859.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1196.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	2.29	0.92	0.0	1.35	1.4	6.43	6.34	1.33	8.74
Merged-chr2-6258624-3	chr2	6258129	6259129	+	858.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45635.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	71.51	81.56	55.5	91.76	86.3	74.75	71.82	92.41	51.84
Merged-chr1-156673787-3	chr1	156673256	156674256	+	858.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023141, intron 1 of 5)	intron (NM_023141, intron 1 of 5)	583.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	258.0	298.13	223.84	271.91	312.09	245.16	228.14	261.32	132.4
Merged-chr12-55430158-3	chr12	55429675	55430675	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	31350.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	10.87	6.91	0.92	8.77	6.53	3.22	19.01	7.52	7.49
Merged-chr19-16085273-3	chr19	16084779	16085779	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47552.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	94.96	111.97	96.2	87.71	71.84	112.53	126.74	184.83	113.66
Merged-chr6-86480503-3	chr6	86480032	86481032	+	858.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131125, intron 1 of 4)	intron (NR_131125, intron 1 of 4)	298.0	NR_131125	320486.0	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	94.39	77.87	75.85	106.61	77.44	91.63	117.24	108.33	54.96
Merged-chr15-43364635-2	chr15	43364128	43365128	+	858.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81892.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	14.3	10.14	0.92	4.72	5.13	6.43	1.06	5.75	0.0
Merged-chr7-45340827-2	chr7	45340316	45341316	+	858.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 27 of 29)	intron (NM_029741, intron 27 of 29)	5547.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	8.58	9.22	7.4	21.59	11.2	14.47	15.84	14.59	17.49
Merged-chr2-102009784-3	chr2	102009253	102010253	+	858.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	123491.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	6.86	3.69	7.4	16.19	8.4	17.68	17.96	17.24	13.74
Merged-chr9-62847889-2	chr9	62847392	62848392	+	858.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 5 of 6)	intron (NM_001033175, intron 5 of 6)	9105.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	10.3	7.37	0.0	5.4	1.87	8.04	5.28	3.98	0.0
Merged-chr2-3526511-3	chr2	3526001	3527001	+	858.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177647)	TTS (NM_177647)	13436.0	NM_177647	227526.0	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	24.03	26.73	12.95	21.59	34.52	36.97	22.18	31.84	2.5
Merged-chr3-89216016-3	chr3	89215450	89216450	+	858.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149740)	promoter-TSS (NR_149740)	-638.0	NR_149740	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	9.72	7.37	3.7	11.47	6.53	0.0	5.28	4.42	1.25
Merged-chr4-137953589-2	chr4	137953087	137954087	+	858.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 15 of 19)	(TTC)n|Simple_repeat|Simple_repeat	-39869.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	14.87	8.75	3.7	13.49	6.53	12.86	20.07	29.63	13.74
Merged-chr1-174052351-2	chr1	174051839	174052839	+	858.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1964.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	8.01	7.37	1.85	41.83	18.66	23.31	41.19	42.89	16.86
Merged-chr12-51729221-1	chr12	51728721	51729721	+	858.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 4 of 5)	intron (NM_001329698, intron 4 of 5)	-37307.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	24.03	18.89	31.45	40.48	39.65	47.42	36.97	26.97	18.74
Merged-chr14-66791971-3	chr14	66791462	66792462	+	858.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76638.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.58	0.92	0.0	2.7	1.4	0.0	3.17	0.0	1.25
Merged-chr9-47703803-3	chr9	47703294	47704294	+	858.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	114414.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	44.05	58.52	35.15	68.15	39.65	45.82	53.87	50.85	55.58
Merged-chr16-31210029-2	chr16	31209525	31210525	+	858.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8787.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	4.58	1.38	1.85	12.14	7.0	4.82	8.45	7.52	13.74
Merged-chr1-20891157-3	chr1	20890671	20891671	+	858.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	623.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	2.29	3.23	9.25	2.7	2.8	12.86	3.17	0.0	5.0
Merged-chr15-83037870-3	chr15	83037324	83038324	+	858.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4427.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	8.01	6.45	9.25	6.75	3.27	20.09	4.22	9.73	4.37
Merged-chr1-152686070-2	chr1	152685581	152686581	+	858.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-60864.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	44.05	34.56	49.95	85.01	48.98	49.83	41.19	38.03	41.84
Merged-chr7-29044369-2	chr7	29043855	29044855	+	858.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009109, intron 83 of 105)	intron (NM_009109, intron 83 of 105)	39339.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	68.65	65.43	61.97	74.22	51.78	77.97	47.53	40.68	33.72
Merged-chr19-16050370-2	chr19	16049870	16050870	+	858.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65295.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	65.21	87.09	52.72	12.14	15.86	16.08	86.61	104.79	53.71
Merged-chrX-86951134-3	chrX	86950625	86951625	+	858.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160403, intron 6 of 10)	intron (NM_001160403, intron 6 of 10)	-596131.0	NR_036689	245502.0	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	5.15	3.23	2.77	8.1	5.13	4.02	6.34	11.05	5.62
Merged-chr4-58909937-3	chr4	58909430	58910430	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355697, intron 1 of 49)	L1MB3|LINE|L1	2000.0	NM_001355697	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	10.87	10.14	6.47	12.82	11.2	3.22	9.51	9.29	7.49
Merged-chr1-186722079-3	chr1	186721577	186722577	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026041, intron 4 of 4)	intron (NM_026041, intron 4 of 4)	-16088.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	3.43	4.15	3.7	2.7	0.93	1.61	0.0	0.0	0.62
Merged-chr18-35119730-3	chr18	35119238	35120238	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009818, intron 1 of 17)	intron (NM_009818, intron 1 of 17)	826.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	73.79	91.7	50.87	66.12	56.91	57.87	96.11	86.66	65.58
Merged-chr3-15194570-3	chr3	15194071	15195071	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137731.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.58	6.91	0.0	6.07	3.27	3.22	4.22	0.44	3.75
Merged-chr1-106151962-3	chr1	106151453	106152453	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040630)	TTS (NR_040630)	19571.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	4.58	2.76	8.32	4.05	1.87	0.0	3.17	1.77	4.37
Merged-chr18-61384317-3	chr18	61383822	61384822	+	858.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	13578.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	58.35	63.59	54.57	28.34	23.79	36.17	76.05	101.7	44.34
Merged-chr8-13666101-2	chr8	13665591	13666591	+	858.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	11496.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	19.45	15.21	8.32	47.23	30.32	24.11	21.12	11.5	7.49
Merged-chr17-45558095-3	chr17	45557600	45558600	+	858.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008690, intron 1 of 5)	intron (NM_008690, intron 1 of 5)	2400.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	151.02	62.67	43.47	116.73	27.52	29.74	80.27	47.75	23.73
Merged-chr18-24470850-3	chr18	24470371	24471371	+	858.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026529)	promoter-TSS (NM_026529)	0.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	31.46	27.19	26.82	33.74	30.79	25.72	35.91	44.22	44.34
Merged-chr10-93365475-3	chr10	93364980	93365980	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29269.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	101.25	97.23	65.67	121.45	94.7	115.75	10.56	11.05	3.75
Merged-chr16-33906392-1	chr16	33905892	33906892	+	858.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 8 of 14)	intron (NM_001145884, intron 8 of 14)	60646.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	20.02	18.89	33.3	33.06	25.19	43.4	23.24	27.86	14.99
Merged-chr2-129381270-3	chr2	129380757	129381757	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10118.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	126.42	144.23	65.67	122.8	73.24	94.04	90.83	111.87	70.57
Merged-chr5-64297268-3	chr5	64296764	64297764	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	L1MB2|LINE|L1	66907.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	61.78	33.64	31.45	66.12	35.92	28.13	64.43	55.71	26.85
Merged-chr4-137374324-3	chr4	137373825	137374825	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-16566.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	123.56	91.7	79.55	124.15	63.91	85.2	168.99	156.53	68.7
Merged-chr2-30214993-3	chr2	30214489	30215489	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9142.0	NM_172404	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	10.87	4.61	13.87	22.27	5.13	10.45	9.51	6.19	6.25
Merged-chr4-95867283-1	chr4	95866783	95867783	+	858.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	MIRb|SINE|MIR	99752.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	9.72	3.23	0.0	6.07	9.8	4.82	11.62	4.42	5.0
Merged-chr11-96875787-3	chr11	96875275	96876275	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25382.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	13.16	2.3	9.25	54.65	30.32	23.31	65.48	30.07	24.36
Merged-chr3-109357866-3	chr3	109357369	109358369	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	17186.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.3	7.37	1.85	8.1	12.6	8.04	3.17	6.63	6.87
Merged-chr7-45705907-5	chr7	45705403	45706403	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016974, intron 1 of 3)	intron (NM_016974, intron 1 of 3)	656.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	203.65	161.27	161.87	127.52	137.15	159.95	198.56	255.13	123.03
Merged-chr9-124027533-3	chr9	124027014	124028014	+	858.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	5543.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	42.33	58.98	31.45	69.5	60.18	72.34	16.9	14.15	11.24
Merged-chr17-67246717-2	chr17	67246270	67247270	+	858.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	107689.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	26.89	39.17	30.52	34.41	33.59	17.68	89.78	92.41	69.95
Merged-chr2-35475089-3	chr2	35474569	35475569	+	858.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-13620.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	25.74	22.58	39.77	14.84	19.13	21.7	8.45	28.74	30.6
Merged-chr4-10977166-2	chr4	10976678	10977678	+	858.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30441.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	44.05	43.31	39.77	38.46	27.52	34.56	73.93	83.57	53.08
Merged-chr4-40776630-2	chr4	40776134	40777134	+	858.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18749.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	14.87	10.6	14.8	15.52	15.39	19.29	22.18	18.57	6.87
Merged-chr6-43640763-3	chr6	43640220	43641220	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	25558.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	23.45	20.27	12.95	21.59	16.79	9.65	20.07	22.55	19.36
Merged-chr4-12241115-3	chr4	12240612	12241612	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69097.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.72	3.23	1.85	4.05	4.67	1.61	4.22	2.65	2.5
Merged-chr1-105169899-3	chr1	105169393	105170393	+	858.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186114.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	23.45	25.8	17.57	24.96	6.06	20.9	26.4	26.09	14.36
Merged-chr13-91223172-3	chr13	91222669	91223669	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	818.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	54.35	68.66	51.8	78.27	54.11	49.83	86.61	91.97	39.35
Merged-chr3-95972390-3	chr3	95971889	95972889	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13121.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	83.52	112.89	70.3	87.71	96.57	73.14	84.49	100.81	60.58
Merged-chr6-17612835-3	chr6	17612313	17613313	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24197.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	56.06	52.99	49.95	30.36	37.79	44.21	34.85	47.31	42.47
Merged-chr15-98631665-3	chr15	98631154	98632154	+	858.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044741)	promoter-TSS (NM_001044741)	-674.0	NM_001044741	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	2.86	0.92	1.85	3.37	0.93	2.41	3.17	0.88	0.0
Merged-chr8-125513596-3	chr8	125513109	125514109	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-20776.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.02	17.51	12.02	21.59	13.53	20.9	19.01	19.9	16.86
Merged-chr3-18625700-1	chr3	18625200	18626200	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145223.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.58	5.53	3.7	29.01	36.85	29.74	31.69	28.74	29.35
Merged-chr16-78205022-2	chr16	78204533	78205533	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50421.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	12.59	7.37	5.55	13.49	6.06	12.06	19.01	15.92	2.5
Merged-chr2-113447501-2	chr2	113447005	113448005	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	6441.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	19.45	20.27	39.77	25.64	18.19	28.94	10.56	9.73	11.87
Merged-chr9-15880356-1	chr9	15879856	15880856	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5800.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	1.14	1.84	1.85	2.7	1.87	0.0	4.22	1.77	2.5
Merged-chr17-6961782-3	chr17	6961286	6962286	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147155)	promoter-TSS (NM_147155)	-630.0	NM_147155	380608.0	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	17.16	17.51	0.0	16.19	10.73	0.0	51.75	95.07	65.58
Merged-chr12-86949727-1	chr12	86949227	86950227	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	intron (NM_173735, intron 1 of 3)	2384.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	17.16	20.74	11.1	36.43	37.79	21.7	27.46	34.93	11.87
Merged-chr6-122601028-3	chr6	122600599	122601599	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 1 of 7)	RLTR19-int|LTR|ERVK	1345.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	143.59	186.16	95.27	132.24	98.9	73.14	239.75	252.92	124.28
Merged-chrX-121497903-3	chrX	121497407	121498407	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	899478.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	30.32	34.56	0.0	35.09	42.92	24.11	4.22	3.54	5.62
Merged-chr8-111596005-3	chr8	111595500	111596500	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	34322.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	5.15	6.91	3.7	14.17	8.86	8.04	8.45	7.96	5.62
Merged-chr17-71196866-1	chr17	71196366	71197366	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-7788.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	24.03	17.05	28.67	17.54	11.66	17.68	16.9	20.78	6.25
Merged-chr1-162478003-3	chr1	162477504	162478504	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172646)	promoter-TSS (NM_172646)	30.0	NM_172646	103967.0	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820	dynamin 3	protein-coding	4.58	2.3	3.7	7.42	6.53	4.02	1.06	1.33	1.25
Merged-chr16-44793885-1	chr16	44793385	44794385	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 6 of 6)	intron (NM_021325, intron 6 of 6)	-26843.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	14.87	14.28	12.95	20.24	14.0	16.88	6.34	13.27	10.62
Merged-chr16-21499256-2	chr16	21498712	21499712	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 21 of 46)	intron (NM_001081366, intron 21 of 46)	76094.0	NM_001285894	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	28.6	28.57	11.1	66.8	37.79	14.47	36.97	29.18	5.0
Merged-chr6-5401567-2	chr6	5401048	5402048	+	858.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 2 of 4)	Lx8|LINE|L1	11138.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.57	0.46	1.85	4.72	0.47	0.0	1.06	4.42	6.25
Merged-chr1-173940538-2	chr1	173940024	173941024	+	858.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	Lx8b|LINE|L1	1968.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	30.32	33.64	18.5	64.1	74.64	42.6	35.91	37.14	23.11
Merged-chr2-4492711-3	chr2	4492222	4493222	+	858.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-67032.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	22.31	12.9	18.5	14.17	11.2	15.27	36.97	19.01	16.24
Merged-chr13-34250868-3	chr13	34250377	34251377	+	858.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	87913.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	26.89	15.21	14.8	42.51	9.8	5.63	23.24	17.69	14.36
Merged-chr14-70520518-3	chr14	70520024	70521024	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009755)	promoter-TSS (NM_009755)	148.0	NM_001360021	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	12.59	1.84	5.55	8.77	4.2	3.22	13.73	1.77	6.25
Merged-chr17-62642672-3	chr17	62642165	62643165	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010109, intron 2 of 3)	intron (NM_010109, intron 2 of 3)	238652.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	20.02	9.68	18.5	21.59	13.53	13.66	11.62	15.03	14.36
Merged-chrX-75514617-3	chrX	75514112	75515112	+	858.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011692, intron 1 of 5)	intron (NM_011692, intron 1 of 5)	315.0	NM_011692	22327.0	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	31.46	37.78	35.15	39.81	38.72	45.01	38.02	44.66	19.36
Merged-chr15-27469380-3	chr15	27468864	27469864	+	858.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	2687.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	4.58	7.83	5.55	10.8	4.2	9.65	2.11	0.88	2.5
Merged-chr6-90728845-3	chr6	90728367	90729367	+	858.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-12338.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	6.29	2.3	4.62	3.37	2.8	0.8	8.45	0.0	3.75
Merged-chr16-92423612-2	chr16	92423093	92424093	+	858.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-23515.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	20.59	17.51	18.5	35.09	27.06	39.39	16.9	10.61	7.49
Merged-chr7-4865186-1	chr7	4864686	4865686	+	858.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026158, intron 1 of 5)	B2_Mm2|SINE|B2	993.0	NM_026158	67441.0	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	4.58	2.76	12.02	11.47	2.33	6.43	35.91	23.88	13.74
Merged-chr12-76948925-3	chr12	76948435	76949435	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	13313.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	17.73	17.51	12.02	17.54	14.93	16.08	26.4	15.92	21.86
Merged-chr10-94480682-1	chr10	94480182	94481182	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-34175.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	21.74	31.33	15.72	37.11	28.46	53.05	32.74	30.95	22.48
Merged-chr9-65577808-3	chr9	65577320	65578320	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	B3|SINE|B2	2267.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	155.03	168.65	168.34	138.99	92.84	153.52	139.42	139.72	121.16
Merged-chr7-118175689-1	chr7	118175189	118176189	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031814, intron 29 of 62)	L1ME1|LINE|L1	-46064.0	NM_019419	54208.0	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	28.6	41.93	26.82	24.29	32.19	38.58	39.08	30.07	21.23
Merged-chrX-20688898-3	chrX	20688396	20689396	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011049, intron 1 of 15)	intron (NM_011049, intron 1 of 15)	470.0	NM_011049	18555.0	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	124.71	107.36	97.12	115.38	83.97	93.24	98.23	75.17	61.83
Merged-chr13-81402551-1	chr13	81402051	81403051	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	L1MDa|LINE|L1	230593.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	33.18	33.64	48.1	38.46	44.78	54.66	51.75	50.41	43.09
Merged-chr12-85543022-3	chr12	85542562	85543562	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-56043.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	12.01	15.21	11.1	15.52	9.8	39.39	19.01	10.17	26.85
Merged-chr3-81126883-3	chr3	81126374	81127374	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90458.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	37.18	34.1	29.6	53.98	41.99	47.42	46.47	38.03	46.22
Merged-chr11-69850156-1	chr11	69849656	69850656	+	858.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031880)	TTS (NM_031880)	3512.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	15.45	17.05	39.77	81.64	73.24	83.59	17.96	22.99	18.74
Merged-chr13-34653582-3	chr13	34653086	34654086	+	858.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025831)	promoter-TSS (NM_025831)	663.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	110.98	91.7	59.2	70.85	71.84	60.28	63.37	34.05	46.84
Merged-chr15-62450337-3	chr15	62449819	62450819	+	858.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230868.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	11.44	11.06	1.85	12.14	7.93	3.22	7.39	6.19	3.75
Merged-chr3-89285456-3	chr3	89284949	89285949	+	858.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4498.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	24.6	13.36	9.25	19.57	8.4	5.63	7.39	3.1	6.25
Merged-chr5-86792946-1	chr5	86792446	86793446	+	858.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-11320.0	NM_001347375	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	2.29	5.53	9.25	8.1	2.33	12.86	6.34	2.65	1.25
Merged-chr11-32586131-1	chr11	32585631	32586631	+	858.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 4 of 18)	intron (NM_009288, intron 4 of 18)	52865.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	12.01	11.52	16.65	18.89	10.26	17.68	17.96	10.61	11.24
Merged-chr14-22913107-3	chr14	22912593	22913593	+	858.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	181478.0	NR_033550	791307.0	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	5.15	5.99	3.7	10.8	10.26	17.68	14.79	8.4	8.74
Merged-chr11-70804877-3	chr11	70804383	70805383	+	858.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7678.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	209.94	195.37	203.49	184.2	93.77	161.56	192.23	240.1	150.51
Merged-chr13-37486466-2	chr13	37485949	37486949	+	858.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	141104.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	10.87	11.52	5.55	10.8	7.93	9.65	3.17	0.88	2.5
Merged-chr15-63613300-3	chr15	63612802	63613802	+	858.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133694.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	34.32	54.37	41.62	26.31	32.19	29.74	51.75	63.67	29.35
Merged-chr4-63368799-3	chr4	63368311	63369311	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 21 of 21)	intron (NM_001045514, intron 21 of 21)	6362.0	NM_011016	18406.0	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	2.86	5.99	4.62	4.05	1.87	8.84	5.28	0.88	6.87
Merged-chr4-62780636-3	chr4	62780137	62781137	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106663.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	1.14	1.38	7.4	10.12	2.8	1.61	2.11	1.77	0.0
Merged-chr2-102974244-3	chr2	102973725	102974725	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72560.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	36.61	41.01	25.9	51.28	39.19	48.23	53.87	35.82	44.34
Merged-chr17-53584107-3	chr17	53583610	53584610	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190846)	promoter-TSS (NM_001190846)	-16.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	9.15	9.68	4.62	16.19	7.46	12.86	15.84	11.05	12.49
Merged-chr8-106972016-3	chr8	106971508	106972508	+	858.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	36258.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	38.9	44.24	34.22	30.36	42.92	44.21	46.47	31.39	13.12
Merged-chr1-128633883-1	chr1	128633383	128634383	+	858.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41584.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.86	3.69	2.77	2.7	5.13	4.82	9.51	6.19	6.25
Merged-chr6-108721780-2	chr6	108721275	108722275	+	858.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60841.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	13.16	9.22	3.7	16.19	6.53	6.43	11.62	10.17	5.62
Merged-chr6-121224080-3	chr6	121223578	121224578	+	858.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13344.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	25.17	26.26	9.25	10.8	18.19	12.06	24.29	18.57	19.36
Merged-chr3-58691452-3	chr3	58690967	58691967	+	858.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009174, exon 1 of 2)	exon (NM_009174, exon 1 of 2)	921.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	287.17	199.06	183.14	269.89	158.61	118.96	246.09	143.26	124.91
Merged-chr9-25289371-3	chr9	25288877	25289877	+	858.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 5 of 12)	intron (NM_001359738, intron 5 of 12)	36485.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	20.02	23.96	24.05	21.59	20.99	9.65	32.74	31.84	31.85
Merged-chr5-72812476-3	chr5	72811982	72812982	+	858.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55966.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	53.77	52.53	16.65	85.69	90.97	75.56	51.75	43.33	37.47
Merged-chr10-75222104-2	chr10	75221611	75222611	+	858.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001145826, exon 2 of 19)	5' UTR (NM_001145826, exon 2 of 19)	9721.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	419.89	423.92	284.89	312.39	299.96	206.57	368.61	439.07	227.33
Merged-chr10-24636152-3	chr10	24635644	24636644	+	858.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40702.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	133.29	142.38	87.87	165.98	150.22	138.25	144.7	155.2	71.2
Merged-chr3-59175444-3	chr3	59174946	59175946	+	858.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	19658.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	13.73	19.35	38.85	4.72	6.06	10.45	5.28	5.75	5.0
Merged-chr12-25393946-3	chr12	25393462	25394462	+	858.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	264788.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.86	3.69	1.85	1.35	5.13	4.82	3.17	5.31	9.37
Merged-chr4-109333334-1	chr4	109332834	109333834	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-9722.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	5.15	6.91	12.95	4.05	12.13	16.08	8.45	7.52	14.99
Merged-chr10-53428941-1	chr10	53428441	53429441	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19059.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	8.58	4.61	4.62	3.37	6.06	1.61	12.67	5.31	5.0
Merged-chr8-104535515-1	chr8	104535015	104536015	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144931)	promoter-TSS (NM_144931)	815.0	NM_001301164	12354.0	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	67.5	71.42	35.15	76.24	60.65	64.3	66.54	72.96	25.61
Merged-chr10-93095399-3	chr10	93094896	93095896	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13800.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	9.72	9.68	22.2	20.92	10.73	19.29	58.09	38.03	34.35
Merged-chr8-56548068-1	chr8	56547568	56548568	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009951, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	2498.0	NM_001009951	382010.0	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	5.15	2.3	1.85	0.67	2.33	1.61	4.22	4.86	8.74
Merged-chr4-32545779-1	chr4	32545279	32546279	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	MTE2b|LTR|ERVL-MaLR	25883.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	6.86	5.53	0.0	7.42	3.27	4.82	6.34	2.65	5.62
Merged-chr5-113624510-1	chr5	113624010	113625010	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	19093.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	9.15	7.37	14.8	16.19	5.13	23.31	11.62	6.63	11.24
Merged-chr2-59229271-1	chr2	59228771	59229771	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	68421.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	36.61	47.92	58.27	55.33	35.92	53.05	55.98	67.21	31.23
Merged-chr13-34064111-3	chr13	34063620	34064620	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026512, intron 6 of 6)	intron (NM_026512, intron 6 of 6)	13888.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.72	7.83	20.35	10.8	7.93	12.86	7.39	1.33	1.25
Merged-chr13-97203288-1	chr13	97202788	97203788	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4931.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	25.17	18.89	24.97	8.1	6.06	12.86	11.62	7.96	1.87
Merged-chr14-47360631-1	chr14	47360131	47361131	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13229.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	39.47	62.67	50.87	63.42	75.57	77.97	103.51	116.29	95.55
Merged-chr1-45923470-1	chr1	45922970	45923970	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 2 of 7)	intron (NM_016917, intron 2 of 7)	2124.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	105.83	203.67	63.82	102.56	142.75	62.7	172.16	219.31	38.1
Merged-chr6-114892280-4	chr6	114891766	114892766	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	29555.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	70.93	61.75	36.07	92.44	63.45	76.36	40.14	60.58	32.48
Merged-chr1-93013631-1	chr1	93013131	93014131	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7297.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	5.72	3.23	1.85	4.72	3.27	7.23	5.28	2.65	1.25
Merged-chr16-5444958-3	chr16	5444465	5445465	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189009.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	17.16	15.21	30.52	23.62	9.8	13.66	2.11	6.63	5.0
Merged-chr11-55458776-1	chr11	55458276	55459276	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	2432.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	45.76	56.22	35.15	56.0	43.85	41.8	57.03	39.8	29.35
Merged-chr13-69660879-1	chr13	69660379	69661379	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48863.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	5.15	2.3	7.4	6.07	0.93	0.0	0.0	1.33	2.5
Merged-chr6-38299078-1	chr6	38298578	38299578	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172467, exon 1 of 4)	exon (NM_172467, exon 1 of 4)	181.0	NM_172467	209032.0	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	1.72	3.69	1.85	5.4	1.87	2.41	2.11	0.0	0.62
Merged-chr10-34047964-1	chr10	34047464	34048464	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162937, intron 1 of 6)	intron (NM_001162937, intron 1 of 6)	-3651.0	NM_001081165	270711.0	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Calhm4|Gm643	family with sequence similarity 26, member D	protein-coding	12.01	5.07	2.77	4.05	2.8	3.22	8.45	1.33	2.5
Merged-chr11-30267666-1	chr11	30267166	30268166	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-47894.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.57	2.3	7.4	1.35	2.8	4.82	5.28	0.0	6.25
Merged-chr2-91456051-2	chr2	91455562	91456562	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1469.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	1.14	4.61	0.0	6.07	0.93	1.61	5.28	1.33	1.25
Merged-chr14-11162066-3	chr14	11161547	11162547	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001308285)	promoter-TSS (NM_001308285)	-12.0	NM_001308285	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	6.86	3.23	3.7	12.14	9.8	6.43	2.11	1.77	8.12
Merged-chr19-47511057-1	chr19	47510557	47511557	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-1925.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	26.31	26.26	29.6	68.15	71.84	66.71	42.25	31.39	23.73
Merged-chr9-61367829-1	chr9	61367329	61368329	+	858.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4537.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.58	8.29	1.85	6.75	3.27	6.43	6.34	1.33	6.87
Merged-chr8-106612282-1	chr8	106611782	106612782	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009864, intron 2 of 15)	ID2|SINE|ID	8932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	6.86	7.37	9.25	6.07	4.2	6.43	9.51	3.98	3.75
Merged-chr2-60818311-1	chr2	60817811	60818811	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63127.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	65.21	64.05	36.07	64.1	60.18	57.07	74.99	68.09	40.59
Merged-chr2-169087468-1	chr2	169086968	169087968	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109199.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	20.59	16.59	12.95	12.82	12.13	30.54	6.34	2.65	8.12
Merged-chr5-122142440-1	chr5	122141940	122142940	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_183307	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	9.15	5.99	1.85	8.77	7.0	4.82	7.39	11.5	3.75
Merged-chr11-73224157-1	chr11	73223657	73224657	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029031, exon 7 of 7)	3' UTR (NM_029031, exon 7 of 7)	-9992.0	NM_001001445	193034.0	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	3.43	2.76	1.85	4.05	1.4	4.82	2.11	2.21	3.75
Merged-chr4-126227193-2	chr4	126226689	126227689	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24479.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	53.77	52.53	36.07	41.16	33.59	40.19	54.92	68.09	47.46
Merged-chr4-16120834-3	chr4	16120350	16121350	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42793.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	6.29	5.07	0.0	8.77	14.93	11.25	12.67	6.63	9.99
Merged-chr6-134559755-2	chr6	134559264	134560264	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	7149.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	31.46	30.87	20.35	33.06	20.06	16.08	51.75	50.85	41.22
Merged-chr10-34176361-1	chr10	34175861	34176861	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 2 of 5)	intron (NM_172508, intron 2 of 5)	31190.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	39.47	47.46	35.15	37.11	39.65	49.03	45.42	42.01	33.72
Merged-chr2-45028297-3	chr2	45027801	45028801	+	858.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	MIRc|SINE|MIR	-5124.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	85.24	78.33	25.9	62.75	47.58	30.54	59.15	50.85	14.36
Merged-chr11-119269227-1	chr11	119268727	119269727	+	858.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008064, intron 1 of 19)	MER21C|LTR|ERVL	1264.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	55.49	41.47	49.95	75.57	82.11	73.14	49.64	46.87	31.85
Merged-chr3-96692781-2	chr3	96692341	96693341	+	857.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3534.0	NM_146135	229615.0	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	6.86	5.07	9.25	6.75	8.86	7.23	13.73	13.71	18.74
Merged-chr6-34359221-3	chr6	34358728	34359728	+	857.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008012, intron 4 of 9)	intron (NM_008012, intron 4 of 9)	5082.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	4.58	1.84	0.0	10.8	3.27	4.82	2.11	1.33	8.74
Merged-chr19-45650119-3	chr19	45649599	45650599	+	857.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	B2_Mm2|SINE|B2	10094.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	44.62	41.93	46.25	62.07	89.1	81.18	24.29	20.34	21.23
Merged-chr7-88285513-2	chr7	88285007	88286007	+	857.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7422.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	48.62	47.92	26.82	58.7	39.19	40.99	63.37	65.0	54.33
Merged-chr2-43561387-3	chr2	43560895	43561895	+	857.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	6070.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	2.29	7.37	1.85	2.02	4.67	3.22	1.06	5.75	5.62
Merged-chr2-28621903-3	chr2	28621414	28622414	+	857.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008114)	promoter-TSS (NM_008114)	68.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	3.43	4.15	0.0	3.37	1.4	4.82	8.45	1.33	1.25
Merged-chr7-127615202-3	chr7	127614677	127615677	+	857.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	95.0	NR_155450	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	51.48	36.4	44.4	54.65	41.05	69.93	51.75	26.09	31.23
Merged-chr5-147918485-3	chr5	147918000	147919000	+	857.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23685.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	3.43	7.37	1.85	6.75	6.06	4.82	4.22	6.19	1.87
Merged-chr13-76597146-3	chr13	76596543	76597543	+	857.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	212082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	6.29	5.53	1.85	3.37	7.46	9.65	5.28	4.86	2.5
Merged-chr8-24554727-3	chr8	24554263	24555263	+	857.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 2 of 9)	intron (NM_145949, intron 2 of 9)	21570.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	1.14	3.23	7.4	13.49	2.33	3.22	5.28	4.86	8.12
Merged-chr12-73123769-3	chr12	73123291	73124291	+	857.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008612)	promoter-TSS (NM_008612)	74.0	NM_008612	17420.0	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	13.73	17.05	12.02	16.87	11.2	26.53	20.07	6.19	9.99
Merged-chr17-24540567-2	chr17	24540070	24541070	+	857.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6823.0	NM_177375	328778.0	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.57	0.92	1.85	6.07	2.8	3.22	5.28	0.44	3.75
Merged-chr2-181675645-3	chr2	181675152	181676152	+	857.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4012.0	NM_009236	20672.0	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	7.44	6.91	3.7	2.7	3.73	5.63	8.45	2.21	2.5
Merged-chr2-23021790-3	chr2	23021275	23022275	+	857.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	RMER19B|LTR|ERVK	18466.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	33.75	36.86	32.37	41.83	30.79	38.58	67.6	50.85	38.1
Merged-chr19-32225330-1	chr19	32224830	32225830	+	857.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 4 of 9)	intron (NM_144792, intron 4 of 9)	-14317.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	40.62	48.84	9.25	98.51	78.84	62.7	29.57	36.26	38.72
Merged-chr4-132806988-3	chr4	132806480	132807480	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10616.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	212.8	169.57	114.69	148.44	118.49	76.36	174.27	267.51	69.95
Merged-chr12-99647097-3	chr12	99646597	99647597	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-19123.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	20.02	18.43	22.2	10.12	5.6	23.31	79.21	97.28	67.45
Merged-chr1-74439696-3	chr1	74439201	74440201	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176972, intron 25 of 25)	intron (NM_176972, intron 25 of 25)	30317.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	17.16	16.13	20.35	52.63	53.18	44.21	28.52	22.11	19.98
Merged-chr2-119251046-3	chr2	119250567	119251567	+	857.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13707.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	4.58	2.3	0.0	8.1	4.67	8.04	4.22	4.42	8.12
Merged-chr18-68148545-1	chr18	68148045	68149045	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L2a|LINE|L2	-79401.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	3.43	4.15	0.0	8.1	5.13	8.04	8.45	7.96	2.5
Merged-chr4-6223245-1	chr4	6222745	6223745	+	857.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32140.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	1.72	1.84	5.55	4.72	0.93	3.22	40.14	50.41	29.35
Merged-chr5-136084473-2	chr5	136083953	136084953	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	537.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	307.19	295.36	245.11	331.29	243.98	205.77	342.2	353.73	151.14
Merged-chr1-80635836-2	chr1	80635351	80636351	+	857.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	29501.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	54.35	52.07	45.32	83.66	36.39	65.91	50.7	51.29	30.6
Merged-chr6-72742569-3	chr6	72742079	72743079	+	857.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	MIR|SINE|MIR	46466.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	13.16	31.33	18.5	18.89	9.33	24.92	48.58	42.01	30.6
Merged-chr13-111494453-2	chr13	111493954	111494954	+	857.7333369999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-4327.0	NM_001361924	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	2.29	2.3	5.55	1.35	3.73	1.61	4.22	4.42	8.12
Merged-chr15-88734297-3	chr15	88733803	88734803	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033274)	promoter-TSS (NM_001033274)	-84.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	18.88	23.04	64.75	33.06	25.66	36.17	43.3	15.92	34.97
Merged-chr16-93192933-3	chr16	93192404	93193404	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160285.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	12.01	17.97	12.02	7.42	14.0	8.84	12.67	5.31	3.75
Merged-chr8-64946592-3	chr8	64946080	64947080	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028427)	promoter-TSS (NM_028427)	-605.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	103.54	112.43	62.9	78.94	77.44	71.54	105.62	120.71	48.71
Merged-chr13-70650246-3	chr13	70649694	70650694	+	857.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-12560.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	26.89	16.13	20.35	16.87	16.79	13.66	6.34	4.86	7.49
Merged-chr8-117201750-2	chr8	117201233	117202233	+	857.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081151, intron 9 of 10)	intron (NM_001081151, intron 9 of 10)	43598.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	17.73	11.06	5.55	10.12	7.0	8.84	12.67	7.07	2.5
Merged-chr17-85575193-1	chr17	85574693	85575693	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43203.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	7.44	3.23	7.4	14.17	6.06	6.43	4.22	5.31	3.75
Merged-chr10-9907657-1	chr10	9907157	9908157	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6617.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	5.72	3.23	0.0	7.42	3.73	1.61	3.17	8.4	6.87
Merged-chr7-125503601-3	chr7	125503107	125504107	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12065.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	21.74	18.89	23.12	11.47	4.67	20.9	24.29	11.94	23.73
Merged-chr6-136728411-3	chr6	136727909	136728909	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127318, intron 13 of 26)	intron (NM_001127318, intron 13 of 26)	53333.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	12.59	6.45	3.7	6.75	2.8	4.02	5.28	2.21	2.5
Merged-chr8-120766804-1	chr8	120766304	120767304	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28165.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	2.86	3.69	3.7	5.4	3.73	1.61	5.28	1.33	2.5
Merged-chr11-120949017-3	chr11	120948526	120949526	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038654)	promoter-TSS (NM_001038654)	-41.0	NM_001038653	80879.0	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	49.77	44.24	38.85	47.9	37.79	52.25	64.43	35.82	32.48
Merged-chr10-8743054-2	chr10	8742556	8743556	+	857.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 12 of 19)	intron (NM_175155, intron 12 of 19)	143014.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.02	20.27	14.8	10.8	13.53	19.29	16.9	8.4	8.74
Merged-chr4-135618205-1	chr4	135617705	135618705	+	857.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8450.0	NR_015613	73937.0	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	2.29	0.92	5.55	3.37	0.93	5.63	7.39	5.31	5.0
Merged-chr12-32209120-3	chr12	32208622	32209622	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146201)	promoter-TSS (NM_001146201)	-473.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	97.82	70.5	60.12	74.89	56.45	68.32	88.72	64.11	65.58
Merged-chr14-46767531-3	chr14	46767034	46768034	+	857.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360041, intron 5 of 7)	intron (NM_001360041, intron 5 of 7)	6993.0	NM_028222	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	46.91	52.07	43.47	42.51	27.99	55.46	25.35	14.59	24.36
Merged-chr3-122629765-2	chr3	122629273	122630273	+	857.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10059.0	NM_001114665	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	6.86	1.38	0.92	9.45	2.33	0.0	22.18	13.71	23.73
Merged-chr11-119022928-3	chr11	119022415	119023415	+	857.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007623)	promoter-TSS (NM_007623)	-106.0	NM_007623	12416.0	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	6.86	4.15	0.0	4.05	3.73	0.0	3.17	2.21	1.25
Merged-chr1-170996958-3	chr1	170996452	170997452	+	857.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20881.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	41.19	32.25	39.77	46.56	36.39	51.44	43.3	44.22	36.85
Merged-chr19-11517571-3	chr19	11517066	11518066	+	857.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027209)	promoter-TSS (NM_027209)	-993.0	NM_027209	69774.0	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	22.31	17.05	23.12	16.87	25.19	35.37	30.63	30.07	19.36
Merged-chr8-25694849-3	chr8	25694361	25695361	+	857.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081269, intron 15 of 22)	intron (NM_001081269, intron 15 of 22)	-25187.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	4.58	15.21	12.02	7.42	12.13	12.86	8.45	12.38	7.49
Merged-chr19-60611959-3	chr19	60611443	60612443	+	857.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30920.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.86	1.84	0.0	4.72	5.13	4.82	5.28	1.77	2.5
Merged-chr16-57347889-2	chr16	57347387	57348387	+	857.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-5390.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.86	2.76	3.7	2.7	2.8	3.22	4.22	3.1	1.87
Merged-chr12-3264584-2	chr12	3264070	3265070	+	857.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 2 of 5)	intron (NM_016676, intron 2 of 5)	28779.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	18.88	33.18	24.05	14.84	20.06	18.49	17.96	17.24	5.0
Merged-chr10-117755465-4	chr10	117754918	117755918	+	857.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134010, intron 26 of 27)	intron (NM_134010, intron 26 of 27)	-9060.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	46.91	61.28	55.5	55.33	55.51	77.16	95.06	80.03	63.7
Merged-chr1-60173305-3	chr1	60172809	60173809	+	857.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7290.0	NM_173444	269198.0	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	15.45	4.61	12.02	14.17	11.66	15.27	4.22	3.54	5.62
Merged-chr11-29514503-3	chr11	29513995	29514995	+	857.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163454, exon 2 of 3)	exon (NM_001163454, exon 2 of 3)	538.0	NM_026465	67939.0	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	259.71	308.73	180.37	103.91	109.16	110.12	121.46	130.44	61.2
Merged-chr7-29229306-3	chr7	29228833	29229833	+	857.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033525, intron 1 of 2)	intron (NM_001033525, intron 1 of 2)	3189.0	NM_001033525	52150.0	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	50.91	70.04	62.9	49.93	40.59	77.16	88.72	94.18	51.84
Merged-chr10-95563634-3	chr10	95563093	95564093	+	857.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358996, intron 1 of 4)	CpG	553.0	NM_027722	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	145.3	105.52	111.92	137.64	91.44	113.33	139.42	71.19	76.82
Merged-chr13-22006088-2	chr13	22005578	22006578	+	857.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019429, exon 8 of 12)	exon (NM_019429, exon 8 of 12)	3663.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	2.86	3.69	1.85	6.07	1.4	1.61	1.06	0.88	4.37
Merged-chr18-49552963-2	chr18	49552469	49553469	+	857.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29680.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	2.29	5.07	1.85	7.42	4.67	4.82	11.62	8.4	5.62
Merged-chr14-67934209-3	chr14	67933718	67934718	+	857.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177780)	promoter-TSS (NM_177780)	-646.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	49.2	53.91	55.5	60.05	50.38	75.56	35.91	31.39	44.34
Merged-chr14-73325037-7	chr14	73324557	73325557	+	857.5095210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 1 of 26)	intron (NM_009029, intron 1 of 26)	765.0	NM_009029	19645.0	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	189.92	201.36	220.14	134.27	167.94	196.93	165.82	167.58	142.39
Merged-chr11-96896054-2	chr11	96895549	96896549	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20465.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	111.55	70.5	28.67	18.22	5.6	6.43	47.53	39.35	42.47
Merged-chr6-16857252-1	chr6	16856752	16857752	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41189.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	18.88	19.81	8.32	31.71	18.66	25.72	25.35	11.94	3.12
Merged-chr11-121803074-1	chr11	121802574	121803574	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27144.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	72.08	98.15	85.1	93.79	85.37	110.92	115.12	109.22	79.32
Merged-chr1-140268486-1	chr1	140267986	140268986	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22229.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	12.59	16.13	20.35	17.54	21.46	9.65	12.67	13.27	6.87
Merged-chr6-108528176-3	chr6	108527684	108528684	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	38441.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	24.03	8.75	11.1	35.76	28.92	27.33	8.45	15.03	10.62
Merged-chr6-85410875-2	chr6	85410389	85411389	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12997.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	3.43	1.84	3.7	3.37	1.87	4.02	3.17	1.77	1.25
Merged-chr8-95320397-1	chr8	95319897	95320897	+	857.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199455, intron 4 of 7)	intron (NM_199455, intron 4 of 7)	8799.0	NM_199455	73407.0	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	4.0	2.76	7.4	5.4	1.87	8.04	3.17	2.65	3.75
Merged-chr1-185196519-3	chr1	185196036	185197036	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7632.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	8.01	7.37	0.0	16.87	17.73	7.23	13.73	6.19	3.75
Merged-chr11-44399893-3	chr11	44399388	44400388	+	857.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303244)	promoter-TSS (NM_001303244)	-175.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	14.87	11.98	12.95	14.84	8.86	15.27	15.84	9.29	11.24
Merged-chr5-5184358-3	chr5	5183832	5184832	+	857.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	L1M4a1|LINE|L1	81736.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	18.31	30.41	24.97	24.96	25.66	22.51	28.52	28.3	13.74
Merged-chr9-58578876-3	chr9	58578374	58579374	+	857.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3366.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	9.72	6.45	5.55	8.1	3.27	0.0	3.17	1.33	6.25
Merged-chr13-95973573-3	chr13	95973076	95974076	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 12 of 12)	intron (NM_029210, intron 12 of 12)	-81654.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	2.29	1.84	4.62	2.7	1.4	3.22	1.06	2.65	3.75
Merged-chr2-26534806-3	chr2	26534295	26535295	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30868.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	12.59	6.45	5.55	15.52	7.93	3.22	5.28	3.54	13.74
Merged-chrX-150626421-3	chrX	150625921	150626921	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008824, intron 8 of 13)	MIRc|SINE|MIR	31015.0	NM_019548	56191.0	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	5.72	2.76	0.0	4.72	0.47	4.82	4.22	3.1	5.0
Merged-chr3-96576389-3	chr3	96575892	96576892	+	857.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9591.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	213.95	213.34	86.95	207.14	163.74	199.34	179.55	271.49	118.66
Merged-chr12-102431713-3	chr12	102431206	102432206	+	857.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	L1Md_F2|LINE|L1	8107.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	58.35	60.82	67.52	62.75	50.85	56.27	71.82	57.92	44.97
Merged-chr11-117712315-2	chr11	117711819	117712819	+	857.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 3 of 21)	intron (NM_198022, intron 3 of 21)	58030.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	7.44	12.44	3.7	14.84	10.73	13.66	14.79	18.57	15.61
Merged-chr12-108795292-2	chr12	108794753	108795753	+	857.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 1 of 4)	intron (NM_009537, intron 1 of 4)	1942.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	104.69	115.66	86.95	109.98	130.62	108.51	122.52	147.68	72.45
Merged-chr19-60608956-3	chr19	60608477	60609477	+	857.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-27954.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.86	4.15	1.85	8.77	4.2	1.61	5.28	4.42	2.5
Merged-chr3-60508192-3	chr3	60507677	60508677	+	857.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	MIR|SINE|MIR	6998.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	18.31	18.43	14.8	18.22	13.06	24.11	28.52	21.22	31.85
Merged-chr2-126490825-3	chr2	126490336	126491336	+	857.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	717.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	9.15	11.52	12.95	17.54	17.26	22.51	6.34	7.96	6.25
Merged-chr4-142077593-3	chr4	142077075	142078075	+	857.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6723.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	94.39	105.98	93.42	99.86	118.03	90.02	202.79	190.13	68.07
Merged-chr3-88443060-3	chr3	88442558	88443558	+	857.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013658, intron 10 of 14)	intron (NM_013658, intron 10 of 14)	-2107.0	NR_105978	102465611.0		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	8.58	7.83	4.62	14.17	4.2	11.25	10.56	6.19	8.74
Merged-chr5-111228443-1	chr5	111227943	111228943	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 8 of 22)	intron (NM_001267622, intron 8 of 22)	-102254.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	4.58	5.07	4.62	14.84	14.0	1.61	4.22	2.21	1.87
Merged-chr6-29530282-3	chr6	29529772	29530772	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252382, intron 1 of 8)	RLTR11A2|LTR|ERVK	990.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	56.06	46.54	54.57	66.8	44.78	59.48	72.88	60.58	32.48
Merged-chr13-23574889-3	chr13	23574384	23575384	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178204)	promoter-TSS (NM_178204)	503.0	NM_178188	319165.0	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	163.61	204.59	110.07	157.21	138.55	127.0	144.7	201.19	86.18
Merged-chr8-122111925-1	chr8	122111425	122112425	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133901.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	10.87	5.07	1.85	12.14	15.39	4.82	5.28	0.88	1.25
Merged-chr11-75032053-1	chr11	75031553	75032553	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	33938.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	50.91	41.01	13.87	33.06	26.59	58.68	27.46	37.58	28.1
Merged-chr11-57951753-3	chr11	57951185	57952185	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57379.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	14.87	9.22	5.55	12.14	6.53	11.25	5.28	6.63	1.87
Merged-chr14-19759927-1	chr14	19759427	19760427	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008695, intron 2 of 20)	intron (NM_008695, intron 2 of 20)	8670.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	16.02	24.42	21.27	12.82	16.33	30.54	16.9	15.03	8.74
Merged-chr19-21467178-1	chr19	21466678	21467678	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	5483.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	2.29	3.23	0.92	4.72	7.0	5.63	6.34	1.33	2.5
Merged-chr5-123027755-3	chr5	123027277	123028277	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	12703.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	29.75	37.78	42.55	38.46	18.19	42.6	16.9	30.95	28.1
Merged-chr12-105821460-1	chr12	105820960	105821960	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 15 of 21)	intron (NM_011112, intron 15 of 21)	36763.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	16.59	17.97	20.35	14.17	14.0	20.09	16.9	12.82	11.24
Merged-chr10-98725329-3	chr10	98724833	98725833	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-189309.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.86	5.99	1.85	6.07	6.06	6.43	7.39	1.33	0.0
Merged-chr17-28750777-3	chr17	28750278	28751278	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-18539.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	8.58	4.61	2.77	9.45	8.4	16.08	3.17	9.73	6.87
Merged-chr18-84848652-1	chr18	84848152	84849152	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	-2686.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	36.61	47.92	20.35	51.95	58.31	61.09	30.63	43.77	26.23
Merged-chr8-35366744-1	chr8	35366244	35367244	+	857.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8997.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	10.87	5.07	3.7	7.42	5.13	1.61	3.17	2.21	0.0
Merged-chr8-73324521-3	chr8	73324001	73325001	+	857.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	29039.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.01	19.81	26.82	7.42	4.67	8.04	41.19	35.37	13.74
Merged-chr9-40563854-3	chr9	40563265	40564265	+	857.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-32382.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	20.02	18.89	25.9	12.82	9.8	14.47	48.58	38.47	28.73
Merged-chr12-111675928-3	chr12	111675435	111676435	+	857.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2170.0	NM_001099792	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	102.97	117.04	71.22	104.58	87.24	130.21	162.65	212.68	85.56
Merged-chr14-16454834-3	chr14	16454340	16455340	+	857.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	GA-rich|Low_complexity|Low_complexity	89634.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	1.72	5.99	3.7	8.77	3.27	1.61	2.11	2.21	2.5
Merged-chr10-10459358-3	chr10	10458842	10459842	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	12972.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	81.8	107.82	71.22	76.24	74.17	78.77	121.46	130.0	98.05
Merged-chr6-140768378-3	chr6	140767891	140768891	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141506.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	62.93	41.93	70.3	37.78	35.92	53.05	45.42	52.62	38.72
Merged-chr17-27622942-3	chr17	27622452	27623452	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291046)	promoter-TSS (NM_001291046)	12.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	177.91	127.18	129.49	184.87	163.74	219.43	190.11	148.57	81.81
Merged-chr3-95862032-3	chr3	95861534	95862534	+	857.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355759)	TTS (NM_001355759)	-6149.0	NR_151629	70767.0	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	2.29	7.37	1.85	3.37	1.87	7.23	5.28	4.86	6.25
Merged-chr1-7113095-3	chr1	7112585	7113585	+	857.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	24165.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	14.3	15.21	18.5	10.12	16.33	20.09	21.12	11.5	9.99
Merged-chr5-124012152-2	chr5	124011654	124012654	+	857.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	15302.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	110.98	85.25	72.15	89.06	78.37	90.02	181.66	118.5	47.46
Merged-chr16-75874714-2	chr16	75874220	75875220	+	857.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	34546.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	18.88	14.28	11.1	28.34	14.93	19.29	20.07	17.69	8.12
Merged-chr9-25561329-2	chr9	25560846	25561846	+	857.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	79749.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.29	6.45	3.7	6.75	2.33	4.02	6.34	2.21	5.0
Merged-chr17-84238382-2	chr17	84237874	84238874	+	857.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-50427.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	7.44	8.29	17.57	12.14	6.53	7.23	11.62	7.96	5.0
Merged-chr3-123333277-3	chr3	123332742	123333742	+	857.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	52748.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	32.61	24.42	33.3	31.71	41.52	54.66	92.94	89.76	48.09
Merged-chr11-79527529-3	chr11	79527034	79528034	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033711, exon 2 of 2)	exon (NM_001033711, exon 2 of 2)	3075.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	342.09	366.32	223.84	334.66	271.51	236.31	238.7	315.27	196.1
Merged-chr10-21566289-3	chr10	21565801	21566801	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26844.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	17.16	14.28	4.62	18.89	11.2	24.11	16.9	20.34	3.12
Merged-chr9-47634942-3	chr9	47634461	47635461	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	104609.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	57.21	51.61	33.3	55.33	39.65	45.82	90.83	97.28	54.96
Merged-chr4-154159182-3	chr4	154158636	154159636	+	857.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151647, intron 3 of 3)	intron (NR_151647, intron 3 of 3)	1548.0	NR_151647	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	8.01	4.15	12.95	6.07	1.87	12.86	6.34	4.42	8.74
Merged-chr17-33638065-3	chr17	33637567	33638567	+	857.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	11.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	58.35	70.96	63.82	53.98	31.26	51.44	99.28	63.67	71.2
Merged-chr17-57339740-3	chr17	57339225	57340225	+	857.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18961.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	64.07	89.85	49.02	39.81	42.92	60.28	108.79	121.6	79.32
Merged-chr10-116572136-2	chr10	116571629	116572629	+	857.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359563, intron 1 of 13)	intron (NM_001359563, intron 1 of 13)	8407.0	NM_001359250	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	42.9	49.3	35.15	53.3	33.12	45.01	72.88	65.88	56.83
Merged-chr18-80709738-2	chr18	80709240	80710240	+	857.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	-1567.0	NM_001164112	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	25.17	30.87	20.35	33.74	20.99	33.76	31.69	28.3	16.24
Merged-chr7-126211095-3	chr7	126210609	126211609	+	857.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-10608.0	NM_028816	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	10.3	4.61	27.75	8.77	5.13	11.25	9.51	4.42	9.99
Merged-chr3-81981700-2	chr3	81981188	81982188	+	857.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5960.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	13.16	12.44	3.7	36.43	22.39	12.06	11.62	13.27	7.49
Merged-chr15-10714752-3	chr15	10714236	10715236	+	857.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166408)	promoter-TSS (NM_001166408)	-100.0	NR_045063	75259.0	Mm.33928	NR_045063	ENSMUSG00000096971	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	7.44	3.23	3.7	12.14	3.73	4.02	3.17	5.31	0.0
Merged-chr2-105674025-3	chr2	105673530	105674530	+	857.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1714.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	4.58	1.38	2.77	5.4	1.4	3.22	3.17	3.98	1.25
Merged-chr19-53311948-5	chr19	53311418	53312418	+	857.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	473.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	118.99	109.67	51.8	105.26	87.24	104.49	96.11	84.9	99.92
Merged-chr18-65328827-3	chr18	65328332	65329332	+	857.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037294, intron 4 of 12)	intron (NM_001037294, intron 4 of 12)	65056.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	1.72	2.76	14.8	6.07	2.33	4.82	5.28	1.77	5.0
Merged-chr1-127257207-3	chr1	127256687	127257687	+	857.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	MER77B|LTR|ERVL	52201.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.44	10.14	3.7	17.54	14.46	15.27	8.45	6.63	5.0
Merged-chr1-16797923-3	chr1	16797409	16798409	+	857.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109453.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	34.9	41.47	37.0	37.11	27.99	34.56	43.3	34.05	18.74
Merged-chr12-100440242-1	chr12	100439742	100440742	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	80580.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	46.34	45.16	53.65	76.92	48.52	53.05	22.18	23.43	34.35
Merged-chr6-99667456-3	chr6	99666955	99667955	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025829)	promoter-TSS (NM_025829)	-684.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	34.9	35.94	41.62	30.36	32.19	24.92	33.8	20.34	16.86
Merged-chr15-41603493-3	chr15	41602986	41603986	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	154383.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.29	3.23	0.0	8.77	5.6	7.23	5.28	2.21	0.0
Merged-chr18-67252498-1	chr18	67251998	67252998	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-6668.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	12.01	13.36	11.1	8.1	11.66	16.08	8.45	5.75	5.62
Merged-chr17-48232685-3	chr17	48232207	48233207	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021406)	promoter-TSS (NM_021406)	-32.0	NM_001347399	58217.0	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	11.44	5.53	12.02	6.07	2.33	8.04	6.34	4.86	11.87
Merged-chr13-54819648-3	chr13	54819122	54820122	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30217.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	56.06	37.32	29.6	35.09	20.06	29.74	40.14	49.52	28.1
Merged-chr11-90224274-1	chr11	90223774	90224774	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-25202.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	31.46	46.08	31.45	68.15	42.45	55.46	39.08	27.86	19.36
Merged-chr6-48446153-1	chr6	48445653	48446653	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085417)	promoter-TSS (NM_001085417)	-328.0	NM_001355746	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	21.17	20.74	21.27	16.19	8.86	33.76	28.52	11.5	24.98
Merged-chr8-84739524-1	chr8	84739024	84740024	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	34845.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	7.44	3.23	5.55	4.72	6.53	5.63	3.17	3.54	2.5
Merged-chr9-111049270-3	chr9	111048757	111049757	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7987.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	9.15	10.6	10.17	14.17	13.06	10.45	10.56	12.82	11.87
Merged-chr16-15636694-1	chr16	15636194	15637194	+	857.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008565, exon 2 of 16)	exon (NM_008565, exon 2 of 16)	706.0	NM_008565	17217.0	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	56.06	46.54	26.82	45.21	23.79	20.9	51.75	43.33	23.11
Merged-chr11-40776529-2	chr11	40776030	40777030	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-21244.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	4.58	7.83	4.62	2.7	1.87	1.61	4.22	3.1	1.25
Merged-chr5-115623068-1	chr5	115622568	115623568	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172719)	TTS (NM_172719)	8748.0	NR_027810	66123.0	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	8.58	2.3	0.0	4.72	6.06	3.22	3.17	3.1	1.87
Merged-chr2-84523284-1	chr2	84522784	84523784	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16411.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	84.66	97.69	66.6	70.85	72.31	57.87	115.12	102.14	47.46
Merged-chr18-11046259-1	chr18	11045759	11046759	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105023, intron 4 of 5)	MIR|SINE|MIR	-6251.0	NM_010258	14465.0	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	5.72	3.69	5.55	0.67	2.8	0.8	0.0	1.77	6.25
Merged-chr2-131174828-3	chr2	131174344	131175344	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027641)	promoter-TSS (NM_027641)	-34.0	NM_027641	70997.0	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	8.58	10.14	12.95	19.57	5.13	16.88	4.22	8.84	14.36
Merged-chr19-56732170-1	chr19	56731670	56732670	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9798.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	15.45	5.53	16.65	25.64	7.46	12.06	17.96	28.3	13.74
Merged-chr18-24223727-3	chr18	24223261	24224261	+	857.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	intron (NM_001361200, intron 1 of 12)	17767.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	28.6	47.46	46.25	44.53	34.99	53.85	51.75	40.24	48.09
Merged-chr19-44389174-2	chr19	44388669	44389669	+	857.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18540.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	224.25	190.3	83.25	289.45	191.73	143.88	286.23	256.01	79.32
Merged-chr3-152192687-3	chr3	152192164	152193164	+	856.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	1181.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	61.78	110.13	25.9	70.85	90.04	72.34	72.88	71.63	38.1
Merged-chr5-122684154-3	chr5	122683664	122684664	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001284402, exon 13 of 13)	3' UTR (NM_001284402, exon 13 of 13)	1567.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	87.52	85.71	61.05	74.22	87.24	75.56	143.64	144.15	91.81
Merged-chr6-39538434-3	chr6	39537937	39538937	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	19397.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	10.87	3.69	18.5	9.45	7.46	8.04	3.17	7.07	2.5
Merged-chr8-70730307-3	chr8	70729787	70730787	+	856.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	6223.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	6.29	3.23	1.85	8.77	4.2	4.82	3.17	1.33	2.5
Merged-chr7-116491260-3	chr7	116490766	116491766	+	856.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13103.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	35.47	23.96	21.27	28.34	18.19	38.58	35.91	25.65	19.98
Merged-chr5-129942435-3	chr5	129941966	129942966	+	856.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	CpG	357.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	22.88	12.44	22.2	22.27	13.53	21.7	28.52	21.67	18.74
Merged-chr1-86437580-3	chr1	86437063	86438063	+	856.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11234.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	6.86	8.75	3.7	20.92	3.73	6.43	10.56	2.65	9.99
Merged-chr9-83652947-2	chr9	83652432	83653432	+	856.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38543.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.0	1.38	0.0	5.4	1.87	1.61	1.06	1.33	3.12
Merged-chr10-68141770-2	chr10	68141284	68142284	+	856.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	136942.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	20.02	27.19	19.42	23.62	21.93	21.7	15.84	6.63	11.24
Merged-chr12-36188385-2	chr12	36187890	36188890	+	856.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146033, intron 7 of 9)	intron (NM_146033, intron 7 of 9)	29828.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	24.03	21.66	26.82	22.27	30.32	27.33	11.62	5.31	7.49
Merged-chr15-25285609-2	chr15	25285093	25286093	+	856.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128171.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	13.16	12.44	3.7	20.92	11.2	11.25	19.01	15.48	12.49
Merged-chr11-46806993-3	chr11	46806461	46807461	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3838.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	18.88	21.2	9.25	35.09	14.46	19.29	23.24	8.4	18.11
Merged-chr1-131446728-3	chr1	131446237	131447237	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	80624.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	53.77	46.54	49.02	43.18	39.65	52.25	47.53	41.56	56.21
Merged-chr14-34674692-3	chr14	34674155	34675155	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004436, intron 1 of 18)	CpG	727.0	NM_001301330	218914.0	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	217.95	282.46	206.26	249.65	241.18	196.93	266.16	244.96	166.12
Merged-chr2-167241121-3	chr2	167240627	167241627	+	856.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-590.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	26.89	21.66	37.92	22.27	11.2	34.56	73.93	31.39	29.35
Merged-chr2-52918336-1	chr2	52917836	52918836	+	856.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	60468.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	12.59	6.91	11.1	7.42	7.0	12.86	19.01	7.07	6.87
Merged-chr13-44646090-3	chr13	44645591	44646591	+	856.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-84683.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	21.17	11.52	12.95	17.54	14.46	8.04	20.07	8.84	13.74
Merged-chr15-84770307-3	chr15	84769813	84770813	+	856.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205334, intron 12 of 12)	intron (NM_001205334, intron 12 of 12)	-50047.0	NR_040347	328576.0	Mm.400211	NR_040347	ENSMUSG00000116396	Gm20556	A430075N02	predicted gene, 20556	ncRNA	8.01	5.99	7.4	3.37	8.86	3.22	20.07	19.9	7.49
Merged-chr1-106232623-2	chr1	106232125	106233125	+	856.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60756.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	108.12	94.0	103.59	109.98	111.03	92.44	80.27	80.92	39.35
Merged-chr9-15933126-2	chr9	15932621	15933621	+	856.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 21 of 24)	intron (NM_001080814, intron 21 of 24)	-58565.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	3.43	6.45	3.7	15.52	10.26	12.86	7.39	9.29	3.75
Merged-chr10-7832236-1	chr10	7831736	7832736	+	856.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172785)	promoter-TSS (NM_172785)	-234.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	37.76	38.71	14.8	39.81	21.93	25.72	34.85	29.63	28.1
Merged-chr2-30784450-3	chr2	30783968	30784968	+	856.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17269.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	40.62	34.56	37.0	56.0	44.78	44.21	45.42	32.72	33.72
Merged-chr8-71562921-3	chr8	71562390	71563390	+	856.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145598, exon 2 of 2)	exon (NM_145598, exon 2 of 2)	3759.0	NM_145598	234404.0	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	6.29	6.91	7.4	3.37	4.67	1.61	6.34	3.1	0.0
Merged-chr7-125551248-3	chr7	125550753	125551753	+	856.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1029.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	54.92	52.07	52.72	60.72	40.59	36.17	36.97	62.35	34.97
Merged-chr16-75853788-1	chr16	75853288	75854288	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	55478.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	27.46	27.19	24.97	6.07	1.87	4.82	6.34	3.1	5.0
Merged-chr7-28374331-3	chr7	28373837	28374837	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1675.0	NM_001083912	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	58.35	60.82	59.2	51.95	29.39	49.03	44.36	39.8	49.96
Merged-chr6-86539626-3	chr6	86539115	86540115	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	intron (NR_037961, intron 3 of 4)	12214.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	10.87	3.69	7.4	11.47	4.67	8.04	8.45	10.17	4.37
Merged-chr1-66700356-3	chr1	66699862	66700862	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025683)	promoter-TSS (NM_025683)	-469.0	NM_025683	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	21.74	33.64	12.02	22.94	20.06	28.94	35.91	19.01	16.86
Merged-chr2-71275927-3	chr2	71275397	71276397	+	856.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 17 of 17)	intron (NM_172436, intron 17 of 17)	63951.0	NM_010064	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	78.94	81.56	52.72	141.69	91.44	78.77	100.34	114.96	66.2
Merged-chr14-86885666-2	chr14	86885188	86886188	+	856.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 20 of 27)	intron (NM_019670, intron 20 of 27)	255536.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	5.72	4.61	3.7	5.4	6.06	3.22	3.17	3.98	4.37
Merged-chr9-45253288-2	chr9	45252736	45253736	+	856.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008348)	TTS (NM_008348)	13471.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	123.56	132.71	144.29	114.7	112.43	125.39	138.36	131.32	88.68
Merged-chr7-71785166-2	chr7	71784665	71785665	+	856.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124530.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	8.01	4.61	1.85	6.75	6.06	14.47	1.06	6.19	2.5
Merged-chr5-122131276-3	chr5	122130764	122131764	+	856.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 2 of 12)	intron (NM_183307, intron 2 of 12)	3629.0	NM_001289811	330188.0	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	100.11	58.06	33.3	91.76	64.38	39.39	88.72	81.8	28.1
Merged-chr3-9901774-2	chr3	9901223	9902223	+	856.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68044.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.43	11.52	7.4	17.54	11.2	6.43	16.9	7.96	15.61
Merged-chr16-5306830-3	chr16	5306319	5307319	+	856.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-50863.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.58	4.15	3.7	2.7	0.47	1.61	2.11	0.44	1.25
Merged-chr13-112102228-2	chr13	112101725	112102725	+	856.5750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186226.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.0	3.69	1.85	3.37	0.93	2.41	3.17	1.77	2.5
Merged-chr1-80340039-5	chr1	80339508	80340508	+	856.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	682.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	135.58	148.83	124.87	142.37	119.89	134.23	156.32	108.77	101.17
Merged-chr11-84880101-6	chr11	84879622	84880622	+	856.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025414)	promoter-TSS (NM_025414)	73.0	NM_027388	70325.0	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	103.54	95.38	126.72	135.62	117.56	154.33	140.47	113.64	80.56
Merged-chr7-115076966-1	chr7	115076466	115077466	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	125692.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.0	2.3	5.55	2.7	1.4	3.22	1.06	0.0	0.0
Merged-chr11-69581005-1	chr11	69580505	69581505	+	856.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	646.0	NM_001127233	22059.0	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	361.54	387.98	289.51	280.68	307.9	299.01	326.36	432.44	236.07
Merged-chr6-31502873-1	chr6	31502373	31503373	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 17 of 17)	intron (NM_013791, intron 17 of 17)	61064.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	5.72	12.44	28.67	17.54	16.79	37.78	16.9	16.8	13.74
Merged-chr7-114276684-2	chr7	114276209	114277209	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011965)	promoter-TSS (NM_011965)	-593.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	19.45	29.03	16.65	14.84	14.46	15.27	21.12	11.5	19.36
Merged-chr6-145806842-2	chr6	145806348	145807348	+	856.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	4.58	4.15	1.85	4.72	4.2	5.63	3.17	5.75	1.25
Merged-chr5-107984796-3	chr5	107984282	107985282	+	856.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	ID_B1|SINE|B4	2295.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	32.04	26.73	14.8	36.43	23.79	30.54	25.35	18.13	37.47
Merged-chr15-25272111-3	chr15	25271655	25272655	+	856.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141609.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	98.97	105.98	86.02	7.42	3.73	2.41	7.39	7.96	4.37
Merged-chr4-141867661-3	chr4	141867129	141868129	+	856.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025994, intron 1 of 3)	intron (NM_025994, intron 1 of 3)	7291.0	NM_025994	27984.0	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	28.6	30.87	22.2	19.57	16.33	24.11	19.01	9.73	17.49
Merged-chr11-118483477-3	chr11	118482986	118483986	+	856.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153103, intron 7 of 13)	intron (NR_153103, intron 7 of 13)	6654.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	53.77	18.89	19.42	72.87	57.38	49.83	43.3	36.26	21.23
Merged-chr1-59907160-3	chr1	59906686	59907686	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-5820.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	31.46	23.5	16.65	24.29	17.73	29.74	11.62	19.01	16.24
Merged-chr3-129422005-3	chr3	129421465	129422465	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11708.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	6.29	2.76	1.85	6.07	4.67	1.61	3.17	3.98	0.0
Merged-chr15-97247351-3	chr15	97246801	97247801	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-14.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	60.07	42.85	25.9	98.51	41.99	58.68	50.7	16.8	16.86
Merged-chr17-8225914-3	chr17	8225416	8226416	+	856.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10127.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	40.62	43.77	28.67	51.95	26.59	29.74	17.96	19.9	18.74
Merged-chr13-40722946-3	chr13	40722477	40723477	+	856.4055789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122948, intron 4 of 6)	CpG	-4831.0	NR_125899	102633805.0		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	5.15	2.3	4.62	4.72	2.33	3.22	2.11	0.88	0.0
Merged-chr17-86125948-3	chr17	86125448	86126448	+	856.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 7 of 20)	intron (NM_030133, intron 7 of 20)	19227.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	15.45	20.27	9.25	6.07	6.06	11.25	7.39	7.52	7.49
Merged-chr15-6557097-3	chr15	6556610	6557610	+	856.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22737.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	58.92	55.75	39.77	86.36	97.5	99.67	61.26	50.85	34.97
Merged-chr10-93171330-3	chr10	93170821	93171821	+	856.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	ORR1E|LTR|ERVL-MaLR	8536.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	22.31	19.35	14.8	31.71	10.73	20.9	33.8	19.01	15.61
Merged-chr1-118498506-3	chr1	118498008	118499008	+	856.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 9 of 39)	intron (NM_001359330, intron 9 of 39)	-39243.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	3.43	2.76	0.0	2.02	1.87	8.04	2.11	6.19	3.75
Merged-chr18-53167081-2	chr18	53166574	53167574	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-9218.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	7.44	3.23	0.0	3.37	0.93	5.63	9.51	2.65	5.0
Merged-chr18-84854150-2	chr18	84853627	84854627	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	2789.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	12.59	14.28	5.55	14.84	7.46	6.43	14.79	6.19	9.99
Merged-chr4-34959680-2	chr4	34959171	34960171	+	856.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48190.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.43	5.53	1.85	8.77	6.06	13.66	5.28	3.98	11.87
Merged-chr2-112457201-1	chr2	112456701	112457701	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133749, intron 1 of 4)	intron (NM_133749, intron 1 of 4)	2176.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	20.02	6.45	3.7	12.82	9.8	8.04	7.39	3.98	3.12
Merged-chr10-127114551-3	chr10	127114059	127115059	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	6601.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	13.73	13.82	14.8	28.34	14.0	11.25	17.96	6.19	5.0
Merged-chr18-23751721-1	chr18	23751221	23752221	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162942)	promoter-TSS (NM_001162942)	584.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	58.35	56.22	21.27	78.94	83.51	58.68	49.64	56.6	36.22
Merged-chr4-141669283-3	chr4	141668791	141669791	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-5176.0	NM_001033150	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	18.31	22.58	11.1	17.54	12.6	18.49	13.73	15.48	6.25
Merged-chr7-71873998-3	chr7	71873494	71874494	+	856.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35701.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	27.46	31.79	23.12	23.62	12.6	24.92	6.34	11.05	1.25
Merged-chr9-63974828-1	chr9	63974328	63975328	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	47231.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	10.87	11.52	1.85	56.68	26.12	18.49	13.73	6.19	8.74
Merged-chr15-84139823-1	chr15	84139323	84140323	+	856.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16648.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	2.29	4.15	3.7	6.07	6.53	14.47	8.45	5.75	11.24
Merged-chr10-89747582-3	chr10	89747099	89748099	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 1 of 20)	intron (NM_029166, intron 1 of 20)	2608.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	8.01	5.99	5.55	18.89	6.53	4.82	9.51	11.5	11.87
Merged-chr10-53863682-3	chr10	53863172	53864172	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112763.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	4.58	4.61	1.85	6.75	3.27	3.22	0.0	0.0	1.25
Merged-chr17-7931757-3	chr17	7931263	7932263	+	856.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145968, intron 8 of 9)	intron (NM_145968, intron 8 of 9)	5763.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	34.9	33.18	14.8	39.81	23.79	20.09	25.35	22.99	13.74
Merged-chr10-115329341-3	chr10	115328861	115329861	+	856.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13770.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	26.89	55.29	16.65	18.89	37.32	39.39	43.3	54.83	43.72
Merged-chr3-95014879-3	chr3	95014386	95015386	+	856.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357863, intron 1 of 8)	CpG	352.0	NM_030074	78266.0	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	110.98	87.09	57.35	89.74	47.12	65.11	91.89	80.03	35.6
Merged-chr9-122785413-3	chr9	122784911	122785911	+	856.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199736, intron 12 of 19)	intron (NM_001199736, intron 12 of 19)	-20136.0	NM_001013405	382117.0	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	6.29	6.45	10.17	14.84	7.46	12.86	23.24	14.15	13.74
Merged-chr17-72934311-1	chr17	72933811	72934811	+	856.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	16006.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	22.31	9.22	12.02	22.94	7.46	8.84	12.67	6.63	4.37
Merged-chr2-34372119-2	chr2	34371635	34372635	+	856.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016768)	promoter-TSS (NM_016768)	-90.0	NM_016768	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	29.17	26.26	49.02	38.46	27.52	47.42	66.54	22.11	20.61
Merged-chr1-172027346-3	chr1	172026835	172027835	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033509)	promoter-TSS (NM_033509)	-40.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	8.58	8.75	1.85	16.19	11.2	11.25	3.17	4.42	0.0
Merged-chr15-88828840-3	chr15	88828315	88829315	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9169.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	3.43	2.3	0.0	0.0	0.47	3.22	1.06	0.88	4.37
Merged-chr13-45507500-3	chr13	45507017	45508017	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025508)	promoter-TSS (NM_025508)	73.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	14.87	7.37	1.85	20.24	10.73	12.86	6.34	6.19	13.12
Merged-chr10-67123924-3	chr10	67123426	67124426	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3332.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	33.18	40.55	43.47	45.21	28.92	27.33	47.53	36.7	33.1
Merged-chr2-60923255-3	chr2	60922755	60923755	+	856.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	39949.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	2.86	4.15	0.0	9.45	7.0	3.22	7.39	7.07	8.74
Merged-chr11-88068515-5	chr11	88068016	88069016	+	856.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	CpG	237.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	121.85	99.99	129.49	153.16	91.44	106.9	170.05	81.36	76.82
Merged-chr18-64958319-3	chr18	64957834	64958834	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	-65193.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	23.45	20.27	16.65	20.92	18.19	4.02	82.38	88.43	34.97
Merged-chr1-149938001-3	chr1	149937519	149938519	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	MTD|LTR|ERVL-MaLR	-15580.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	20.59	21.66	25.9	36.43	44.78	54.66	43.3	38.03	25.61
Merged-chr4-48591050-3	chr4	48590545	48591545	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021436, intron 1 of 9)	Tigger13a|DNA|TcMar-Tigger	5871.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	8.58	11.52	5.55	8.77	5.13	14.47	11.62	7.07	15.61
Merged-chr10-122116787-3	chr10	122116302	122117302	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-2895.0	NR_027637	100043513.0	Mm.429141	NR_027637	ENSMUSG00000111952	Gm4489	Gm241	predicted gene 4489	ncRNA	13.73	4.61	0.0	6.07	3.27	8.04	5.28	6.19	6.25
Merged-chr19-8252250-3	chr19	8251720	8252720	+	856.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-33320.0	NM_001347426	236293.0	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	10.3	6.91	1.85	20.92	16.79	29.74	23.24	16.8	16.24
Merged-chr13-91372046-1	chr13	91371546	91372546	+	856.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045161, intron 2 of 2)	intron (NR_045161, intron 2 of 2)	16039.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	10.3	5.99	8.32	11.47	7.0	7.23	5.28	3.1	7.49
Merged-chr2-34774349-8	chr2	34773805	34774805	+	856.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022310, exon 5 of 8)	exon (NM_022310, exon 5 of 8)	2215.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	75.51	68.2	28.67	58.7	30.32	18.49	27.46	38.03	24.98
Merged-chr3-14913508-3	chr3	14913003	14914003	+	856.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27215.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	49.77	74.65	29.6	55.33	40.12	58.68	44.36	45.54	20.61
Merged-chr2-158121775-3	chr2	158121352	158122352	+	856.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 10 of 12)	intron (NM_009373, intron 10 of 12)	24540.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	20.02	11.98	33.3	25.64	12.13	24.92	21.12	13.27	24.98
Merged-chr3-65891799-3	chr3	65891284	65892284	+	856.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66465.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	10.3	11.06	16.65	4.05	3.27	8.04	5.28	11.5	7.49
Merged-chr12-108180355-2	chr12	108179865	108180865	+	856.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009832, intron 1 of 11)	intron (NM_009832, intron 1 of 11)	627.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	226.53	305.5	186.84	190.95	246.32	171.21	272.5	259.55	148.01
Merged-chr2-120742553-3	chr2	120742058	120743058	+	856.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024856, intron 15 of 15)	intron (NM_001024856, intron 15 of 15)	-11041.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	31.46	23.5	23.12	26.99	22.39	25.72	15.84	22.11	4.37
Merged-chr12-98267814-3	chr12	98267308	98268308	+	856.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008152)	promoter-TSS (NM_008152)	-827.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	89.81	129.48	97.12	119.43	84.44	141.47	104.56	126.02	84.94
Merged-chr1-161195820-4	chr1	161195373	161196373	+	856.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36559.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	5.15	6.45	3.7	7.42	3.27	5.63	3.17	6.63	3.75
Merged-chr12-113220735-3	chr12	113220230	113221230	+	856.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34827.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	5.15	5.53	1.85	6.75	6.06	4.02	3.17	2.65	2.5
Merged-chr10-12919440-3	chr10	12918931	12919931	+	856.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038028, intron 2 of 2)	intron (NR_038028, intron 2 of 2)	3696.0	NR_038027	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	9.15	4.61	1.85	10.12	9.33	1.61	23.24	8.4	14.99
Merged-chr15-79895294-3	chr15	79894792	79895792	+	856.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347041, intron 1 of 7)	intron (NM_001347041, intron 1 of 7)	269.0	NM_001347041	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	24.03	15.21	12.02	19.57	17.26	25.72	143.64	200.3	73.07
Merged-chr11-106480708-3	chr11	106480224	106481224	+	856.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	7072.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	46.34	40.55	32.37	43.86	36.85	38.58	41.19	30.51	21.86
Merged-chr12-3572308-4	chr12	3571822	3572822	+	856.025024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_149729)	promoter-TSS (NR_149729)	-69.0	NM_001162465	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	13.16	9.22	3.7	20.92	12.6	6.43	11.62	15.03	1.25
Merged-chr9-103337158-3	chr9	103336657	103337657	+	856.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176979, intron 19 of 27)	intron (NM_176979, intron 19 of 27)	27822.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	10.3	20.74	9.25	16.19	12.6	12.86	23.24	22.99	16.86
Merged-chr1-95339792-3	chr1	95339310	95340310	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	26182.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	9.15	12.9	10.17	12.82	11.66	12.06	13.73	14.59	3.75
Merged-chr9-7244920-1	chr9	7244420	7245420	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27594.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	10.3	7.83	2.77	10.8	9.33	15.27	12.67	5.31	13.12
Merged-chr1-63437771-1	chr1	63437271	63438271	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-8120.0	NM_011780	23792.0	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	6.29	3.23	0.0	6.07	1.87	1.61	1.06	2.21	7.49
Merged-chr14-118595613-1	chr14	118595113	118596113	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 17 of 29)	intron (NM_001163676, intron 17 of 29)	-3141.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	20.02	16.13	11.1	16.87	18.66	8.84	11.62	8.84	8.74
Merged-chr16-58503631-1	chr16	58503131	58504131	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	MTD|LTR|ERVL-MaLR	19795.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	29.75	41.01	24.97	33.74	20.99	36.17	45.42	45.99	43.09
Merged-chr3-145691669-1	chr3	145691169	145692169	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3b|LINE|CR1	-41684.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	4.58	7.83	4.62	27.66	26.12	43.4	33.8	22.11	28.1
Merged-chr18-74991307-2	chr18	74990806	74991806	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9171.0	NM_001002239	319195.0	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	5.15	3.23	0.0	5.4	1.87	1.61	4.22	0.88	3.75
Merged-chr8-11480538-1	chr8	11480038	11481038	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_126558)	TTS (NR_126558)	-2039.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	5.72	4.15	0.0	6.75	7.0	2.41	5.28	5.75	5.0
Merged-chr2-165300535-1	chr2	165300035	165301035	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12697.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	20.59	18.43	18.5	20.92	14.46	16.88	17.96	18.13	12.49
Merged-chr3-22024366-2	chr3	22023873	22024873	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52279.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	12.01	5.53	4.62	12.14	12.6	4.82	4.22	6.63	5.0
Merged-chr6-108826237-1	chr6	108825737	108826737	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2404.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	14.87	13.82	27.75	22.94	12.13	8.84	19.01	13.27	11.24
Merged-chr10-112803768-1	chr10	112803268	112804268	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33984.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	3.43	0.46	1.85	1.35	6.53	0.0	1.06	1.33	3.75
Merged-chr5-117356824-3	chr5	117356314	117357314	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021539)	promoter-TSS (NM_021539)	-491.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	66.93	25.8	51.8	62.75	23.79	41.8	58.09	34.49	31.85
Merged-chr2-91078683-1	chr2	91078183	91079183	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8368.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	36.04	35.94	28.67	37.78	26.12	39.39	8.45	10.61	5.0
Merged-chr2-132591723-1	chr2	132591223	132592223	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-6473.0	NR_033468	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	9.15	9.68	22.2	8.77	4.2	5.63	6.34	7.96	8.12
Merged-chr10-36971012-1	chr10	36970512	36971512	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-3532.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	12.59	19.81	20.35	15.52	15.39	15.27	6.34	10.61	11.24
Merged-chr19-32935722-1	chr19	32935222	32936222	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	178145.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.29	5.07	5.55	4.05	0.93	4.82	9.51	2.65	7.49
Merged-chr11-54963024-2	chr11	54962535	54963535	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199276)	promoter-TSS (NM_001199276)	-95.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	12.01	6.91	1.85	10.8	0.47	3.22	15.84	7.96	5.0
Merged-chr8-70682942-2	chr8	70682445	70683445	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9714.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.72	0.46	5.55	6.07	0.0	0.0	1.06	2.65	1.25
Merged-chr3-16210115-3	chr3	16209629	16210629	+	856.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 5 of 5)	intron (NM_172677, intron 5 of 5)	26964.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	24.03	44.24	34.22	23.62	34.06	52.25	29.57	37.14	28.73
Merged-chr2-144642148-1	chr2	144641648	144642648	+	856.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	42195.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	5.15	3.23	1.85	3.37	4.2	3.22	3.17	1.77	2.5
Merged-chr3-9347050-2	chr3	9346549	9347549	+	855.9833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56029.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	5.15	2.76	5.55	6.75	2.8	6.43	4.22	2.21	2.5
Merged-chr3-127035680-3	chr3	127035163	127036163	+	855.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 10 of 47)	L2|LINE|L2	-37211.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.29	3.69	0.0	5.4	2.33	2.41	8.45	9.29	3.12
Merged-chr1-74304609-3	chr1	74304090	74305090	+	855.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027154)	promoter-TSS (NM_027154)	-254.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	126.42	151.14	84.17	164.63	160.48	108.51	167.93	136.63	81.19
Merged-chr10-20398394-3	chr10	20397894	20398894	+	855.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013875, exon 13 of 13)	3' UTR (NM_013875, exon 13 of 13)	50575.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	27.46	35.02	20.35	26.31	21.93	24.11	23.24	20.78	10.62
Merged-chr10-33986986-3	chr10	33986491	33987491	+	855.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_015526)	TTS (NR_015526)	8064.0	NR_015526	414093.0	Mm.156915	NR_015526	ENSMUSG00000112280	A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	6.29	6.45	5.55	5.4	6.53	3.22	1.06	4.86	0.62
Merged-chr5-76430103-2	chr5	76429596	76430596	+	855.9249880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53981.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	4.58	5.99	3.7	13.49	7.93	9.65	5.28	7.52	2.5
Merged-chr2-6380094-3	chr2	6379596	6380596	+	855.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	27360.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	14.87	5.53	8.32	15.52	12.13	16.08	9.51	12.82	10.62
Merged-chr11-59559789-2	chr11	59559287	59560287	+	855.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	11951.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	21.17	22.58	20.35	31.04	26.59	32.96	29.57	29.63	30.6
Merged-chr19-40728926-3	chr19	40728446	40729446	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	69176.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	11.44	8.75	12.95	15.52	10.26	6.43	10.56	9.73	5.62
Merged-chr6-88379934-3	chr6	88379437	88380437	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	66602.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	10.3	5.07	14.8	6.07	9.33	5.63	6.34	5.75	3.12
Merged-chr16-30466077-3	chr16	30465588	30466588	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-77558.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	11.44	17.05	23.12	21.59	17.26	38.58	70.76	73.84	24.36
Merged-chr17-25823609-3	chr17	25823105	25824105	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173741)	promoter-TSS (NM_173741)	-22.0	NM_173741	268933.0	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	33.18	33.64	20.35	33.06	26.12	32.96	34.85	34.49	30.6
Merged-chr6-28866375-3	chr6	28865874	28866874	+	855.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-34627.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	9.72	10.6	21.27	9.45	3.27	18.49	11.62	5.75	14.36
Merged-chr18-84091722-3	chr18	84091228	84092228	+	855.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	3570.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	48.05	36.4	46.25	41.16	36.39	51.44	59.15	52.18	23.11
Merged-chr6-39226705-3	chr6	39226220	39227220	+	855.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19947.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	90.96	94.92	76.77	144.39	106.83	101.28	107.73	113.64	38.72
Merged-chr16-57441247-2	chr16	57440750	57441750	+	855.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	87973.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.29	5.07	5.55	7.42	7.0	4.82	8.45	5.31	2.5
Merged-chr2-153208323-2	chr2	153207822	153208822	+	855.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 17 of 17)	MTC|LTR|ERVL-MaLR	17119.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	13.16	12.44	5.55	33.74	23.33	40.19	36.97	24.32	14.36
Merged-chr19-6891294-2	chr19	6890799	6891799	+	855.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-18399.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	8.01	5.53	3.7	4.72	6.06	11.25	6.34	3.98	3.75
Merged-chr2-84733957-3	chr2	84733454	84734454	+	855.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005342)	promoter-TSS (NM_001005342)	-250.0	NM_001005342	241525.0	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee like 4	protein-coding	4.58	2.3	1.85	5.4	5.13	5.63	5.28	3.54	1.25
Merged-chr3-127282547-3	chr3	127282043	127283043	+	855.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	121238.0	NR_105029	100862268.0	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	22.88	16.13	23.12	29.69	12.6	38.58	16.9	12.38	7.49
Merged-chr6-71442237-3	chr6	71441753	71442753	+	855.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1616.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	41.76	24.42	35.15	45.21	34.06	36.17	45.42	37.14	34.35
Merged-chr11-62731750-4	chr11	62731190	62732190	+	855.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2597.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	22.88	17.51	16.65	16.19	24.72	20.9	40.14	38.91	20.61
Merged-chr8-57512889-2	chr8	57512372	57513372	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008252, intron 2 of 4)	CpG-14025	1029.0	NM_008252	97165.0	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	49.2	39.17	56.42	55.33	26.59	44.21	45.42	40.24	29.98
Merged-chr4-134286374-3	chr4	134285872	134286872	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146156, intron 1 of 2)	intron (NM_146156, intron 1 of 2)	881.0	NM_001163794	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	38.9	35.02	33.3	48.58	39.19	60.28	60.2	53.94	34.97
Merged-chr12-35890905-3	chr12	35890414	35891414	+	855.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-34707.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	8.01	8.29	12.95	15.52	3.73	7.23	3.17	4.42	12.49
Merged-chr1-144005815-3	chr1	144005311	144006311	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1662.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	106.97	166.8	66.6	100.53	121.76	104.49	106.67	178.64	76.19
Merged-chr11-120720633-3	chr11	120720130	120721130	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	-838.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	12.01	2.76	1.85	2.7	6.53	5.63	4.22	1.77	5.0
Merged-chr3-138118942-3	chr3	138118432	138119432	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355052, intron 7 of 21)	intron (NM_001355052, intron 7 of 21)	12721.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	54.35	103.68	45.32	116.73	114.76	98.06	88.72	93.74	42.47
Merged-chr6-125252909-3	chr6	125252416	125253416	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-12609.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	58.35	65.43	49.02	58.7	42.45	69.13	76.05	103.47	62.45
Merged-chr11-103345109-3	chr11	103344603	103345603	+	855.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133715)	promoter-TSS (NM_133715)	350.0	NR_045346	653030.0	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648	Rho GTPase activating protein 27, opposite strand 3	ncRNA	20.59	15.21	17.57	17.54	6.53	16.08	38.02	24.32	20.61
Merged-chr7-144471274-3	chr7	144470775	144471775	+	855.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007803)	promoter-TSS (NM_007803)	-340.0	NM_001252572	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	20.59	25.34	41.62	16.87	9.8	40.19	29.57	30.51	26.23
Merged-chr4-133131416-4	chr4	133130896	133131896	+	855.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	763.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	160.75	154.36	138.74	171.38	131.09	157.54	177.44	229.93	111.79
Merged-chr1-120258967-1	chr1	120258467	120259467	+	855.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	6313.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	4.58	3.69	9.25	4.05	4.2	11.25	4.22	2.21	6.87
Merged-chr9-57879399-2	chr9	57878908	57879908	+	855.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31578.0	NM_027086	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	9.15	5.07	1.85	6.75	0.93	8.04	5.28	3.54	1.25
Merged-chr4-119142407-3	chr4	119141912	119142912	+	855.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	31444.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	4.0	6.91	2.77	5.4	6.06	5.63	8.45	1.33	0.0
Merged-chr9-83610048-3	chr9	83609556	83610556	+	855.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	3.43	0.92	3.7	1.35	3.27	7.23	3.17	1.33	2.5
Merged-chr9-120073346-3	chr9	120072822	120073822	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5026.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	14.3	7.83	11.1	15.52	6.06	8.04	8.45	3.1	1.25
Merged-chrX-134583529-1	chrX	134583029	134584029	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013482)	promoter-TSS (NM_013482)	-389.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	63.5	60.36	52.72	63.42	36.39	65.11	71.82	76.05	37.47
Merged-chr8-41047061-3	chr8	41046564	41047564	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	intron (NM_001005863, intron 5 of 13)	-5133.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	11.44	12.44	7.4	39.81	31.72	35.37	57.03	46.87	9.99
Merged-chr12-105869459-1	chr12	105868959	105869959	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	84762.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.57	0.92	5.55	6.07	1.4	12.86	5.28	1.33	2.5
Merged-chr14-40949893-3	chr14	40949375	40950375	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	L1MC4|LINE|L1	-1666.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	20.59	31.33	26.82	31.04	27.99	41.8	28.52	20.34	21.86
Merged-chr2-92253967-1	chr2	92253467	92254467	+	855.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	32405.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.57	4.61	0.0	10.8	5.13	8.04	8.45	4.86	4.37
Merged-chr14-31685806-3	chr14	31685244	31686244	+	855.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	44687.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	7.44	2.76	5.55	10.12	6.06	10.45	13.73	10.17	6.25
Merged-chr3-69691231-2	chr3	69690756	69691756	+	855.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-30799.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.43	3.69	8.32	10.12	4.2	11.25	14.79	9.29	18.11
Merged-chr5-64160209-3	chr5	64159745	64160745	+	855.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310611)	promoter-TSS (NM_001310611)	-15.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	9.15	5.07	4.62	18.22	7.0	9.65	9.51	5.31	3.75
Merged-chr4-155116724-2	chr4	155116220	155117220	+	855.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	30116.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	20.59	11.52	15.72	39.13	20.53	21.7	11.62	6.63	5.62
Merged-chr13-21735482-3	chr13	21734967	21735967	+	855.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178210)	TTS (NM_178210)	433.0	NM_178210	319159.0		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	21.17	17.51	26.82	28.34	18.19	25.72	36.97	42.45	37.47
Merged-chr17-57017574-3	chr17	57017067	57018067	+	855.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_133801	98053.0	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	12.59	3.69	1.85	4.05	8.4	15.27	10.56	10.61	16.86
Merged-chr7-114168491-3	chr7	114167996	114168996	+	855.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-50715.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.86	4.61	1.85	3.37	4.2	0.0	17.96	8.4	3.75
Merged-chr10-44400344-3	chr10	44399835	44400835	+	855.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40659.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	8.58	6.91	11.1	12.14	11.66	16.88	7.39	8.84	6.87
Merged-chr7-28907408-3	chr7	28906908	28907908	+	855.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021895, intron 8 of 20)	intron (NM_021895, intron 8 of 20)	25752.0	NM_001110807	60594.0	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	9.72	5.99	5.55	29.01	21.93	8.04	8.45	5.31	6.87
Merged-chr2-124574112-6	chr2	124573627	124574627	+	855.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-36169.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	34.32	34.1	24.97	29.69	20.06	20.9	25.35	16.36	18.74
Merged-chr11-69605989-3	chr11	69605504	69606504	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013415)	promoter-TSS (NM_013415)	-44.0	NM_013415	11932.0	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	4.0	3.69	8.32	4.05	4.2	4.02	1.06	1.33	0.0
Merged-chr16-75929727-2	chr16	75929209	75930209	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20443.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.58	8.75	9.25	6.75	5.6	7.23	4.22	5.31	6.87
Merged-chr15-66686857-2	chr15	66686356	66687356	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009375, intron 11 of 47)	intron (NM_009375, intron 11 of 47)	16086.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	8.01	6.91	4.62	3.37	1.87	13.66	3.17	3.54	5.0
Merged-chr7-45935326-2	chr7	45934833	45935833	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033243, intron 2 of 12)	intron (NM_001033243, intron 2 of 12)	6935.0	NM_001033243	211535.0	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	2.86	0.0	0.92	1.35	2.33	4.82	3.17	1.33	2.5
Merged-chr1-180392270-3	chr1	180391767	180392767	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-61718.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	114.41	73.73	66.6	66.8	32.66	17.68	96.11	86.66	30.6
Merged-chr15-31369454-1	chr15	31368954	31369954	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NM_027496	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.29	1.84	7.4	1.35	2.8	3.22	4.22	0.44	6.25
Merged-chr12-36032655-2	chr12	36032167	36033167	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	9811.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	42.33	54.83	24.05	73.54	57.38	57.87	11.62	7.52	3.12
Merged-chr1-37622111-3	chr1	37621609	37622609	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 7 of 9)	intron (NM_028096, intron 7 of 9)	-81093.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	22.31	5.53	11.1	8.1	4.2	4.02	10.56	3.1	5.62
Merged-chr5-90247295-1	chr5	90246795	90247795	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23299.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	23.45	30.87	19.42	37.78	23.79	38.58	35.91	37.14	29.35
Merged-chr8-35498481-3	chr8	35497972	35498972	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-2939.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	7.44	3.23	5.55	8.1	3.27	7.23	3.17	1.33	7.49
Merged-chr6-122945034-1	chr6	122944534	122945534	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-7481.0	NM_001204241	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	21.74	13.82	36.07	12.14	17.73	13.66	19.01	10.17	18.74
Merged-chr1-78507389-3	chr1	78506875	78507875	+	855.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3685.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	11.44	4.61	5.55	3.37	5.13	1.61	2.11	2.65	8.12
Merged-chr16-23592743-1	chr16	23592243	23593243	+	855.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17176.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	29.75	24.88	16.65	37.78	21.46	40.19	33.8	31.39	39.97
Merged-chr13-43775446-3	chr13	43774922	43775922	+	855.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9690.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	9.72	14.28	1.85	12.82	6.06	2.41	5.28	3.98	5.0
Merged-chr7-81290748-3	chr7	81290250	81291250	+	855.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 3 of 21)	MER105|DNA|DNA	54484.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	50.34	26.26	9.25	35.09	23.33	36.17	39.08	23.43	13.12
Merged-chr7-34380501-2	chr7	34379994	34380994	+	855.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	9211.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	8.58	11.52	12.02	8.1	14.0	20.09	8.45	10.61	7.49
Merged-chr1-165703228-3	chr1	165702719	165703719	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	4875.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	25.74	29.95	30.52	23.62	18.66	34.56	42.25	35.82	21.23
Merged-chr10-128499470-3	chr10	128498988	128499988	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172259)	promoter-TSS (NM_172259)	241.0	NR_131151	654440.0	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	82.38	92.62	110.07	88.39	79.77	115.75	153.15	133.53	95.55
Merged-chr12-105781524-3	chr12	105781019	105782019	+	855.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 17 of 17)	intron (NM_030187, intron 17 of 17)	-3178.0	NM_011112	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	22.31	27.19	24.05	23.62	19.59	4.82	32.74	19.9	19.98
Merged-chr1-132367775-2	chr1	132367267	132368267	+	855.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311108, exon 1 of 4)	5' UTR (NM_001311108, exon 1 of 4)	181.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	9.72	3.23	3.7	11.47	0.93	3.22	4.22	2.65	5.0
Merged-chr14-63443644-5	chr14	63443156	63444156	+	855.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	7262.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	122.42	140.54	98.97	127.52	125.96	146.29	103.51	148.57	71.82
Merged-chr5-43048558-1	chr5	43048058	43049058	+	855.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184905.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	9.72	6.45	3.7	8.77	4.67	4.82	1.06	3.54	3.12
Merged-chr7-80501099-3	chr7	80500597	80501597	+	855.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042527, intron 7 of 21)	intron (NM_001042527, intron 7 of 21)	33901.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	29.17	9.68	20.35	43.86	21.46	24.92	29.57	26.09	6.87
Merged-chr13-98807869-3	chr13	98807370	98808370	+	855.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	intron (NM_172591, intron 1 of 25)	7579.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	43.48	57.6	58.27	42.51	45.72	43.4	74.99	98.6	42.47
Merged-chr19-9911518-3	chr19	9911019	9912019	+	855.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11986.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	53.77	38.71	48.1	58.7	42.92	40.99	79.21	54.39	32.48
Merged-chr1-173942521-3	chr1	173942045	173943045	+	855.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302651)	promoter-TSS (NM_001302651)	-53.0	NM_001302651	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	27.46	22.58	11.1	53.98	30.79	42.6	85.55	95.51	62.45
Merged-chr16-52082065-3	chr16	52081590	52082590	+	855.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	50541.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	23.45	20.27	32.37	23.62	20.06	11.25	15.84	28.3	21.23
Merged-chr7-34167997-2	chr7	34167485	34168485	+	855.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016682, intron 1 of 16)	MIR|SINE|MIR	544.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	82.38	108.75	103.59	78.94	100.3	87.61	113.01	72.07	62.45
Merged-chr3-153797763-1	chr3	153797263	153798263	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5676.0	NR_045801	70594.0	Mm.491050	NR_045801	ENSMUSG00000062046	5730460C07Rik	-	RIKEN cDNA 5730460C07 gene	ncRNA	1.14	0.46	0.0	1.35	1.87	0.0	2.11	2.21	5.0
Merged-chr13-23778475-1	chr13	23777975	23778975	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4066.0	NM_001029935	214158.0	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	6.29	3.23	3.7	3.37	3.27	8.04	3.17	3.98	1.25
Merged-chr4-94768815-2	chr4	94768305	94769305	+	855.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013690, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	29516.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	1.72	4.15	8.32	9.45	9.8	6.43	2.11	1.33	5.0
Merged-chr9-107259842-1	chr9	107259342	107260342	+	855.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316691, intron 5 of 7)	intron (NM_001316691, intron 5 of 7)	-27933.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	2.86	2.76	0.0	11.47	6.06	3.22	2.11	1.33	5.0
Merged-chr1-84363381-3	chr1	84362875	84363875	+	855.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78730.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	8.58	18.43	15.72	23.62	15.86	30.54	13.73	10.61	6.87
Merged-chr1-165120537-3	chr1	165120068	165121068	+	855.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28638.0	NR_040480	75857.0	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	5.15	1.38	2.77	1.35	3.27	0.0	6.34	0.88	1.25
Merged-chr13-51853545-3	chr13	51853034	51854034	+	855.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6859.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.0	1.84	1.85	9.45	3.27	4.02	6.34	3.54	5.0
Merged-chr8-70605799-2	chr8	70605298	70606298	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	2516.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	17.16	8.29	22.2	15.52	7.93	10.45	40.14	21.22	14.99
Merged-chr11-115657087-2	chr11	115656595	115657595	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	-28800.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	37.18	36.86	46.25	42.51	25.19	50.64	67.6	68.98	24.98
Merged-chr18-8678027-2	chr18	8677532	8678532	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-534824.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	18.88	22.12	21.27	12.14	13.06	10.45	34.85	39.8	16.24
Merged-chr9-102793185-1	chr9	102792685	102793685	+	855.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-41735.0	NM_013649	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	5.72	8.29	5.55	13.49	10.73	13.66	0.0	3.98	3.75
Merged-chr13-23517953-6	chr13	23517455	23518455	+	855.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13089.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	104.11	179.71	65.67	84.34	79.31	48.23	117.24	152.11	61.83
Merged-chr14-87075321-1	chr14	87074821	87075821	+	855.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 3 of 27)	ORR1C1|LTR|ERVL-MaLR	65903.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	5.15	4.61	3.7	2.02	6.53	10.45	6.34	3.1	3.75
Merged-chr10-43842003-3	chr10	43841461	43842461	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	16054.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	36.04	34.56	48.1	55.33	52.72	73.95	71.82	56.6	46.84
Merged-chr2-129314108-3	chr2	129313607	129314607	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-4135.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	20.02	17.51	15.72	27.66	13.06	24.92	17.96	15.48	19.98
Merged-chr10-108178607-3	chr10	108178095	108179095	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	RSINE1|SINE|B4	16195.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	27.46	17.05	14.8	18.89	17.73	19.29	23.24	19.01	31.23
Merged-chr13-48550733-3	chr13	48550227	48551227	+	855.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12455.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	37.18	40.09	38.85	43.86	26.59	37.78	82.38	43.77	38.1
Merged-chr14-15061386-2	chr14	15060887	15061887	+	855.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240572.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	17.16	20.27	22.2	10.12	14.93	18.49	51.75	41.12	26.23
Merged-chr11-20240628-2	chr11	20240070	20241070	+	855.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172260, exon 3 of 7)	exon (NM_172260, exon 3 of 7)	8854.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	17.73	11.98	24.97	10.12	7.46	13.66	12.67	10.61	5.0
Merged-chr16-12471739-2	chr16	12471233	12472233	+	855.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-339657.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	1.14	11.52	9.25	10.12	25.66	13.66	10.56	13.27	7.49
Merged-chr16-44018541-2	chr16	44018041	44019041	+	855.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 5 of 16)	intron (NM_001359085, intron 5 of 16)	-2105.0	NM_153528	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	12.01	11.98	15.72	8.77	9.8	4.82	45.42	45.99	24.36
Merged-chr14-27341640-3	chr14	27341154	27342154	+	855.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	MIRb|SINE|MIR	5617.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	17.16	14.75	26.82	16.87	14.93	13.66	63.37	31.84	27.48
Merged-chr9-48745154-2	chr9	48744647	48745647	+	855.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	90798.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	5.72	1.38	1.85	2.02	0.47	9.65	3.17	0.44	3.75
Merged-chr3-90710214-2	chr3	90709727	90710727	+	855.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-14506.0	NM_001281852	20202.0	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	5.72	1.38	0.0	2.02	0.93	4.02	1.06	0.88	2.5
Merged-chr14-66190452-3	chr14	66189884	66190884	+	855.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 2 of 30)	L2b|LINE|L2	23440.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	40.04	29.03	40.7	21.59	24.72	21.7	23.24	23.43	31.23
Merged-chr2-153444224-6	chr2	153443689	153444689	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 4 of 10)	CpG	290.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	19.45	12.44	12.95	24.96	9.8	12.06	8.45	5.31	10.62
Merged-chr9-45417414-3	chr9	45416906	45417906	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040732, intron 4 of 4)	intron (NR_040732, intron 4 of 4)	11329.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	8.01	7.37	1.85	12.14	6.06	4.82	20.07	15.92	17.49
Merged-chr12-33040960-3	chr12	33040441	33041441	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024478, intron 15 of 19)	intron (NM_001024478, intron 15 of 19)	51934.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	9.15	17.97	8.32	23.62	27.99	15.27	23.24	17.69	5.62
Merged-chr16-91545722-3	chr16	91545192	91546192	+	855.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	57.78	51.15	56.42	49.93	33.12	46.62	98.23	89.32	69.32
Merged-chr10-127559058-1	chr10	127558558	127559558	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 45 of 88)	intron (NM_008512, intron 45 of 88)	-24499.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.15	4.15	3.7	2.02	3.27	8.84	3.17	0.0	1.87
Merged-chr3-101618195-1	chr3	101617695	101618695	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-13488.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.43	6.91	5.55	3.37	1.87	14.47	3.17	3.98	6.25
Merged-chr2-13479835-1	chr2	13479335	13480335	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 6 of 66)	intron (NM_001081084, intron 6 of 66)	12041.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	3.43	3.23	5.55	6.07	1.87	0.8	4.22	4.86	3.75
Merged-chr6-72096959-1	chr6	72096459	72097459	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011375)	promoter-TSS (NM_011375)	-649.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	159.03	147.45	119.32	145.74	159.08	118.16	191.17	252.04	85.56
Merged-chr18-39559545-1	chr18	39559045	39560045	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72300.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.86	1.84	3.7	5.4	7.93	0.8	11.62	1.33	3.75
Merged-chr12-34701666-2	chr12	34701176	34702176	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-172787.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	9.15	19.81	18.5	17.54	11.2	16.08	28.52	17.69	17.49
Merged-chr10-89703226-2	chr10	89702740	89703740	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16877.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	4.58	7.83	0.0	9.45	5.6	8.04	17.96	10.61	23.11
Merged-chr13-20379764-1	chr13	20379264	20380264	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-93226.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.15	0.46	5.55	4.72	5.13	8.04	5.28	6.19	6.25
Merged-chr4-133632207-1	chr4	133631707	133632707	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1222.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	33.75	55.29	55.5	71.52	73.24	117.35	51.75	34.93	51.84
Merged-chr16-95800803-1	chr16	95800303	95801303	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	97910.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	9.72	8.29	9.25	8.77	6.06	4.82	9.51	6.63	3.75
Merged-chr17-42909582-2	chr17	42909083	42910083	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33159.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	8.58	7.37	16.65	6.07	5.13	6.43	67.6	57.92	53.08
Merged-chr15-27988342-1	chr15	27987842	27988842	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	MTC|LTR|ERVL-MaLR	37506.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.29	3.69	1.85	16.87	7.0	3.22	7.39	5.31	3.12
Merged-chr12-110855601-1	chr12	110855101	110856101	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199785, exon 2 of 7)	exon (NM_001199785, exon 2 of 7)	5322.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	5.15	3.69	2.77	69.5	65.31	53.05	67.6	58.81	33.1
Merged-chr13-74390442-1	chr13	74389942	74390942	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13876.0	NM_001081680	238722.0	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	31.46	44.24	25.9	42.51	33.59	38.58	33.8	40.68	21.23
Merged-chr2-129197916-1	chr2	129197416	129198416	+	855.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159593)	promoter-TSS (NM_001159593)	-857.0	NM_015747	20515.0	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	319.78	263.57	172.04	388.64	279.44	167.99	275.66	317.92	122.41
Merged-chr16-23269567-1	chr16	23269067	23270067	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-20903.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	9.72	15.21	7.4	19.57	11.2	18.49	14.79	9.73	15.61
Merged-chr8-70606827-2	chr8	70606317	70607317	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1497.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	19.45	13.36	11.1	22.27	16.79	8.04	36.97	31.84	23.11
Merged-chr10-121305656-1	chr10	121305156	121306156	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 4 of 12)	intron (NM_001361015, intron 4 of 12)	5740.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.43	0.92	0.0	3.37	0.47	1.61	2.11	2.65	2.5
Merged-chr14-103155900-1	chr14	103155400	103156400	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_207215, exon 58 of 85)	exon (NM_207215, exon 58 of 85)	-56334.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	1.72	4.15	6.47	6.07	5.6	8.04	2.11	4.86	3.12
Merged-chr2-33871068-1	chr2	33870568	33871568	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16878.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	3.43	4.15	1.85	54.65	79.31	43.4	28.52	45.99	38.1
Merged-chr8-33855777-1	chr8	33855277	33856277	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042675, intron 4 of 6)	L1MB4|LINE|L1	74086.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.58	1.84	0.0	4.05	0.47	3.22	3.17	1.33	3.12
Merged-chr10-39490434-1	chr10	39489934	39490934	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	120635.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.58	1.84	0.0	2.7	1.4	5.63	3.17	0.44	1.25
Merged-chr7-116504846-1	chr7	116504346	116505346	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130479, intron 1 of 13)	intron (NM_001130479, intron 1 of 13)	477.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	75.51	83.4	60.12	94.46	76.04	81.18	65.48	54.39	32.48
Merged-chr16-89830481-1	chr16	89829981	89830981	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 15 of 27)	intron (NM_009384, intron 15 of 27)	-12129.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.43	1.38	0.0	5.4	5.6	3.22	0.0	2.65	11.24
Merged-chr17-12770118-2	chr17	12769635	12770635	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010515)	promoter-TSS (NM_010515)	-429.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	16.02	12.44	12.02	18.89	14.0	9.65	30.63	30.51	11.24
Merged-chr2-146948679-2	chr2	146948191	146949191	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033298, intron 9 of 13)	intron (NM_001033298, intron 9 of 13)	-64308.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	9.72	14.28	18.5	11.47	10.73	17.68	1.06	2.21	3.75
Merged-chr3-121426444-1	chr3	121425944	121426944	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028044)	promoter-TSS (NM_028044)	-97.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	8.01	2.76	1.85	2.7	3.27	1.61	5.28	0.0	3.75
Merged-chr11-106193076-1	chr11	106192576	106193576	+	855.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252449, intron 1 of 10)	intron (NM_001252449, intron 1 of 10)	527.0	NM_001252448	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	61.21	65.89	82.32	50.6	47.58	67.52	79.21	81.8	73.69
Merged-chr10-26376891-1	chr10	26376391	26377391	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1672.0	NM_172787	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	15.45	9.68	5.55	10.8	8.86	12.06	7.39	11.05	15.61
Merged-chr1-39714211-3	chr1	39713714	39714714	+	855.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145660, intron 2 of 14)	intron (NM_001145660, intron 2 of 14)	6775.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	13.73	4.15	9.25	15.52	13.53	3.22	9.51	6.63	9.37
Merged-chr15-67146860-2	chr15	67146352	67147352	+	855.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	30030.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	12.01	10.6	2.77	26.99	18.19	33.76	13.73	10.61	17.49
Merged-chr17-64723397-3	chr17	64722905	64723905	+	854.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 16 of 21)	Lx8|LINE|L1	-43706.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	10.3	15.21	18.5	36.43	18.66	44.21	9.51	8.4	12.49
Merged-chr6-56808835-3	chr6	56808325	56809325	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11012.0	NM_001362213	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	5.72	7.37	10.17	6.75	4.67	3.22	3.17	4.86	3.75
Merged-chr13-45977100-3	chr13	45976616	45977616	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12125.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	7.44	6.45	11.1	6.75	4.67	19.29	6.34	8.4	10.62
Merged-chr11-82561742-3	chr11	82561240	82562240	+	854.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-71613.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	32.61	35.02	35.15	24.29	28.46	57.87	38.02	39.35	36.22
Merged-chr10-79975283-3	chr10	79974783	79975783	+	854.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130455, intron 3 of 8)	intron (NM_130455, intron 3 of 8)	4559.0	NM_130455	170483.0	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	30.32	11.52	18.5	33.06	8.86	41.8	20.07	19.46	21.23
Merged-chr2-152335550-3	chr2	152335054	152336054	+	854.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2915.0	NM_019705	24105.0	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	10.87	1.84	3.7	4.05	1.87	4.02	4.22	8.84	7.49
Merged-chr12-100925751-3	chr12	100925261	100926261	+	854.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-17563.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	88.1	98.15	39.77	116.73	110.56	73.95	59.15	72.96	39.97
Merged-chr7-31059307-2	chr7	31058824	31059824	+	854.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144556)	promoter-TSS (NM_144556)	-611.0	NM_144556	243914.0	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	5.15	3.23	5.55	11.47	4.67	8.04	6.34	1.77	1.25
Merged-chr19-17348068-3	chr19	17347574	17348574	+	854.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-8569.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	26.89	20.27	20.35	29.01	10.73	22.51	21.12	14.15	11.24
Merged-chr3-97238675-3	chr3	97238175	97239175	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-11311.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	11.44	10.6	7.4	12.14	5.6	8.84	9.51	12.82	10.62
Merged-chr4-136180157-3	chr4	136179651	136180651	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305399)	promoter-TSS (NM_001305399)	-631.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	10.3	7.83	5.55	26.31	25.66	24.92	19.01	7.96	12.49
Merged-chr12-24492722-3	chr12	24492231	24493231	+	854.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5850.0	NM_020614	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	18.31	27.19	16.65	21.59	27.52	40.19	25.35	23.88	13.74
Merged-chr5-21036310-3	chr5	21035814	21036814	+	854.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	RSINE1|SINE|B4	-1067.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	184.2	129.94	61.97	211.86	102.17	83.59	210.18	263.09	78.07
Merged-chr11-94753132-2	chr11	94752621	94753621	+	854.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8061.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	14.87	12.44	24.05	14.17	10.26	14.47	32.74	18.13	16.24
Merged-chr2-167348082-3	chr2	167347586	167348586	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	1092.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	46.91	49.3	37.92	66.8	50.85	45.01	71.82	50.41	24.36
Merged-chr1-156264163-3	chr1	156263668	156264668	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134741, intron 14 of 17)	ORR1F|LTR|ERVL-MaLR	39180.0	NM_001134741	214575.0	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	2.86	3.23	9.25	6.75	2.8	6.43	1.06	1.33	6.25
Merged-chr19-35126827-3	chr19	35126309	35127309	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161413.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	17.73	18.43	9.25	14.84	20.99	18.49	8.45	3.1	3.12
Merged-chr19-29824508-3	chr19	29824005	29825005	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11531.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	2.86	11.06	3.7	5.4	4.2	3.22	8.45	0.88	7.49
Merged-chr11-60536618-3	chr11	60536108	60537108	+	854.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1075.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	136.72	136.85	51.8	161.93	149.75	113.33	104.56	126.46	66.2
Merged-chr5-112279569-3	chr5	112279062	112280062	+	854.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	2871.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	108.12	147.91	140.59	122.12	133.42	97.26	116.18	125.58	91.81
Merged-chr9-108203197-3	chr9	108202705	108203705	+	854.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12822.0	NM_007567	12217.0	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	24.03	29.95	20.35	12.82	18.19	22.51	22.18	35.82	17.49
Merged-chr10-96266417-3	chr10	96265906	96266906	+	854.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40199.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.15	8.29	5.55	2.02	2.33	3.22	2.11	5.31	5.62
Merged-chr10-20507264-3	chr10	20506772	20507772	+	854.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	41056.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	14.3	9.68	3.7	14.84	24.26	20.9	10.56	9.29	10.62
Merged-chr10-80918160-4	chr10	80917648	80918648	+	854.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010722)	promoter-TSS (NM_010722)	97.0	NM_010722	16907.0	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	20.59	11.52	13.87	11.47	14.93	16.08	17.96	11.05	23.73
Merged-chr8-111642678-3	chr8	111642139	111643139	+	854.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011742)	promoter-TSS (NM_011742)	-804.0	NM_001037665	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	49.77	49.3	55.5	56.68	56.91	53.05	59.15	70.3	39.35
Merged-chr17-36836303-3	chr17	36835815	36836815	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286727)	promoter-TSS (NM_001286727)	-831.0	NM_001025599	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	122.99	143.76	88.8	72.19	59.71	55.46	138.36	155.64	73.07
Merged-chr10-94372884-3	chr10	94372372	94373372	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	60923.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	69.22	69.12	31.45	155.19	90.97	65.91	98.23	107.45	46.22
Merged-chr18-78808071-3	chr18	78807558	78808558	+	854.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	intron (NM_053099, intron 4 of 5)	-211108.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	17.73	24.42	22.2	12.82	10.26	23.31	13.73	19.01	17.49
Merged-chr6-4978472-3	chr6	4977967	4978967	+	854.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	75147.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	67.5	59.9	30.52	56.0	61.58	49.03	51.75	53.5	21.23
Merged-chr19-5945184-3	chr19	5944654	5945654	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 13 of 17)	intron (NM_001164057, intron 13 of 17)	19052.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	102.97	84.78	51.8	113.35	76.04	100.47	27.46	26.09	24.36
Merged-chr17-10566682-1	chr17	10566182	10567182	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	110466.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	3.43	3.23	5.55	6.75	5.6	4.82	2.11	1.33	9.37
Merged-chr10-80900366-3	chr10	80899903	80900903	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010722)	TTS (NM_010722)	566.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	87.52	61.28	81.4	99.86	77.91	79.58	91.89	72.52	53.08
Merged-chr8-70131721-3	chr8	70131211	70132211	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011266, exon 9 of 9)	3' UTR (NM_011266, exon 9 of 9)	384.0	NM_001025587	75692.0	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	113.27	82.48	90.65	92.44	55.05	79.58	139.42	82.69	69.95
Merged-chr13-81761925-1	chr13	81761425	81762425	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21322.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.72	4.61	1.85	1.35	2.8	1.61	4.22	1.77	3.75
Merged-chr10-117792298-1	chr10	117791798	117792798	+	854.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134010, intron 1 of 27)	CpG	407.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	94.39	82.02	55.5	81.64	73.24	79.58	79.21	82.69	43.09
Merged-chr5-99985034-3	chr5	99984491	99985491	+	854.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6053.0	NM_001077267	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	25.74	29.95	24.05	26.99	27.52	23.31	22.18	27.41	30.6
Merged-chr10-95703170-4	chr10	95702713	95703713	+	854.636902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139067.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	11.44	5.53	5.55	11.47	5.6	6.43	5.28	7.07	2.5
Merged-chr16-81324671-3	chr16	81324182	81325182	+	854.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	MTE2b|LTR|ERVL-MaLR	123985.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	5.15	6.91	5.55	7.42	8.86	4.02	6.34	7.96	5.0
Merged-chr15-91168193-3	chr15	91167669	91168669	+	854.611145	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	23838.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	16.02	18.43	18.5	44.53	48.52	45.01	64.43	55.27	29.98
Merged-chr16-33885104-3	chr16	33884645	33885645	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	55480.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	59.49	59.9	56.42	51.95	69.51	65.11	80.27	60.13	56.83
Merged-chr11-100611889-3	chr11	100611391	100612391	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	intron (NM_019795, intron 1 of 13)	8277.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	65.21	73.73	49.95	61.4	34.99	52.25	57.03	67.21	46.84
Merged-chr5-124424888-3	chr5	124424390	124425390	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081203, intron 1 of 31)	CpG	712.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	200.22	151.14	173.89	124.82	139.95	166.38	201.73	219.76	126.15
Merged-chr12-85372463-3	chr12	85371938	85372938	+	854.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	intron (NM_026775, intron 1 of 4)	2279.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	74.94	69.12	71.22	53.3	46.18	98.06	81.33	78.71	64.95
Merged-chr1-84002844-1	chr1	84002344	84003344	+	854.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	216117.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	4.58	2.3	3.7	12.14	8.86	10.45	2.11	8.84	3.75
Merged-chr10-79824571-2	chr10	79824058	79825058	+	854.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030218, intron 1 of 4)	intron (NM_030218, intron 1 of 4)	3537.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	36.61	32.72	29.6	23.62	38.72	40.19	40.14	37.14	33.72
Merged-chr1-89876827-3	chr1	89876327	89877327	+	854.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 15 of 16)	intron (NM_001037136, intron 15 of 16)	54349.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	4.0	1.38	1.85	4.72	5.6	8.04	1.06	2.65	4.37
Merged-chr6-114659704-3	chr6	114659211	114660211	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	16614.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	13.16	13.36	22.2	14.84	12.13	25.72	17.96	7.52	14.99
Merged-chr12-91660818-3	chr12	91660306	91661306	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-70319.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	18.31	17.97	16.65	15.52	10.73	8.84	20.07	13.27	13.12
Merged-chr17-5589155-3	chr17	5588666	5589666	+	854.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	96566.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	89.81	83.86	50.87	107.28	92.37	62.7	105.62	103.91	53.71
Merged-chr11-117663636-3	chr11	117663150	117664150	+	854.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	9361.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	101.83	88.47	69.37	84.34	90.97	94.04	72.88	99.05	56.21
Merged-chr17-70958423-1	chr17	70957923	70958923	+	854.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	32093.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	4.0	1.84	1.85	5.4	0.93	4.82	17.96	15.48	6.25
Merged-chr3-88082874-3	chr3	88082356	88083356	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033484, intron 1 of 37)	intron (NM_001033484, intron 1 of 37)	805.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	9.72	10.14	7.4	13.49	8.86	6.43	19.01	8.84	1.25
Merged-chr19-32176140-1	chr19	32175640	32176640	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	34873.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.58	1.84	4.62	8.77	1.4	0.0	2.11	6.63	1.87
Merged-chr12-25242586-2	chr12	25242093	25243093	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113419.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.15	3.23	5.55	6.07	1.87	1.61	7.39	4.42	5.0
Merged-chr3-85604551-3	chr3	85604023	85605023	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144896, exon 4 of 13)	exon (NM_144896, exon 4 of 13)	30394.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	60.07	54.37	63.82	34.41	20.53	17.68	49.64	59.69	23.73
Merged-chr16-59610899-2	chr16	59610412	59611412	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-26033.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	7.44	3.69	0.0	3.37	5.6	4.82	2.11	3.54	2.5
Merged-chr6-94254184-1	chr6	94253684	94254684	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-16742.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	5.72	1.38	0.0	9.45	3.27	4.82	1.06	3.98	5.0
Merged-chr4-139288259-1	chr4	139287759	139288759	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009798, intron 8 of 8)	intron (NM_009798, intron 8 of 8)	22449.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.86	2.76	4.62	12.82	4.2	19.29	6.34	4.42	14.36
Merged-chr17-22424877-1	chr17	22424377	22425377	+	854.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331197, intron 1 of 5)	RLTR9E|LTR|ERVK	675.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	18.88	16.59	14.8	12.14	14.93	9.65	9.51	6.63	5.0
Merged-chr4-62208522-3	chr4	62208022	62209022	+	854.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290353)	promoter-TSS (NM_001290353)	24.0	NM_001290351	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	24.6	18.43	17.57	56.0	54.58	40.19	32.74	24.76	18.74
Merged-chr6-142339165-3	chr6	142338690	142339690	+	854.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6507.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	7.44	5.07	1.85	8.1	4.67	4.82	3.17	2.21	1.25
Merged-chr16-55509977-3	chr16	55509469	55510469	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	15238.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	5.72	5.07	3.7	5.4	5.6	1.61	7.39	1.33	5.0
Merged-chr12-85480810-3	chr12	85480293	85481293	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6903.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	6.29	2.3	5.55	6.07	3.27	0.0	2.11	3.54	8.74
Merged-chr6-136721238-3	chr6	136720742	136721742	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145067, intron 16 of 25)	B4A|SINE|B4	-59349.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	6.29	5.07	0.0	5.4	2.8	1.61	15.84	10.61	6.25
Merged-chr1-186584074-3	chr1	186583582	186584582	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25401.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	5.72	7.83	7.4	11.47	6.06	11.25	13.73	6.63	5.0
Merged-chr9-95557518-3	chr9	95557018	95558018	+	854.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2299.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	34.9	47.46	35.15	39.13	40.12	34.56	54.92	40.24	29.35
Merged-chr5-65722708-3	chr5	65722205	65723205	+	854.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-24849.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	35.47	38.25	25.9	26.99	15.86	52.25	28.52	28.74	32.48
Merged-chr16-3956629-1	chr16	3956129	3957129	+	854.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081280, intron 7 of 17)	RMER19B|LTR|ERVK	20003.0	NM_175547	268857.0	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	6.86	9.68	12.95	8.1	8.4	8.84	3.17	2.21	8.74
Merged-chr2-102839306-1	chr2	102838806	102839806	+	854.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 6 of 13)	intron (NM_001039150, intron 6 of 13)	62359.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	9.15	3.23	0.0	10.12	4.2	16.88	5.28	4.42	6.25
Merged-chr2-120098052-2	chr2	120097556	120098556	+	854.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	56519.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	34.32	28.11	5.55	64.1	37.79	22.51	99.28	120.27	36.22
Merged-chr14-21299944-3	chr14	21299446	21300446	+	854.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-199824.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	14.3	5.99	10.17	16.19	8.4	17.68	6.34	5.31	8.12
Merged-chr9-95559425-4	chr9	95558908	95559908	+	854.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198414)	promoter-TSS (NM_198414)	-409.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	100.68	52.07	81.4	104.58	55.05	87.61	125.69	53.06	41.84
Merged-chr6-101552330-3	chr6	101551839	101552839	+	854.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174442.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	7.44	9.68	1.85	8.77	5.13	4.82	4.22	7.96	0.0
Merged-chr8-45934904-2	chr8	45934414	45935414	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033246, intron 1 of 6)	intron (NM_001033246, intron 1 of 6)	265.0	NM_001033246	212392.0	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	2.86	3.69	4.62	5.4	1.87	0.0	2.11	0.88	0.0
Merged-chr19-18595044-1	chr19	18594544	18595544	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 3 of 9)	L1MC5|LINE|L1	36769.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	18.31	8.75	7.4	12.82	8.86	8.04	15.84	4.86	8.74
Merged-chr2-118601417-1	chr2	118600917	118601917	+	854.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009773, intron 2 of 22)	intron (NM_009773, intron 2 of 22)	3206.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	18.88	19.81	12.02	29.69	23.33	16.08	113.01	119.83	66.2
Merged-chr10-89695489-1	chr10	89694989	89695989	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130956, intron 2 of 2)	intron (NR_130956, intron 2 of 2)	9126.0	NR_130956	69002.0	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	13.16	10.14	5.55	14.84	17.73	12.86	5.28	2.21	3.75
Merged-chr3-41463160-1	chr3	41462660	41463660	+	854.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30039.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	1.72	6.45	2.77	1.35	4.2	1.61	5.28	3.54	0.0
Merged-chr17-46388436-2	chr17	46387928	46388928	+	854.31665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021346, intron 2 of 7)	intron (NM_021346, intron 2 of 7)	4662.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	9.15	12.9	7.4	12.82	8.86	14.47	19.01	18.57	17.49
Merged-chr14-19986215-3	chr14	19985686	19986686	+	854.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8937.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	133.86	174.64	160.94	147.09	137.62	118.96	121.46	155.64	101.8
Merged-chr10-121351398-3	chr10	121350869	121351869	+	854.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361015, exon 1 of 13)	exon (NM_001361015, exon 1 of 13)	275.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	6.86	4.15	1.85	6.07	4.2	4.82	4.22	4.86	1.25
Merged-chr6-29263772-3	chr6	29263282	29264282	+	854.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8706.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	43.48	22.12	8.32	57.35	27.06	19.29	65.48	34.93	8.74
Merged-chr14-30763139-3	chr14	30762637	30763637	+	854.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	MTD|LTR|ERVL-MaLR	47522.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	38.33	38.71	12.95	40.48	19.59	38.58	29.57	29.18	26.85
Merged-chr12-52284429-2	chr12	52283943	52284943	+	854.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 7 of 10)	intron (NM_029760, intron 7 of 10)	186697.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	10.87	11.52	8.32	6.07	6.06	11.25	17.96	13.27	6.25
Merged-chr5-90777792-2	chr5	90777296	90778296	+	854.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5361.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	25.74	14.28	1.85	32.39	30.32	25.72	27.46	15.48	18.74
Merged-chr4-109119807-3	chr4	109119316	109120316	+	854.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	MTD|LTR|ERVL-MaLR	-1780.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	96.68	137.77	79.55	82.99	76.51	99.67	143.64	146.36	93.68
Merged-chr14-102795909-3	chr14	102795422	102796422	+	854.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186710.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	9.72	23.04	35.15	9.45	13.06	35.37	15.84	24.32	23.73
Merged-chr16-16856910-3	chr16	16856437	16857437	+	854.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A|LTR|ERVK	7048.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	41.76	52.99	59.2	45.21	40.12	66.71	66.54	74.28	58.71
Merged-chr11-77508239-3	chr11	77507734	77508734	+	854.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001004144)	TTS (NM_001004144)	5039.0	NM_001024920	216964.0	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	5.72	3.23	7.4	5.4	4.67	5.63	4.22	2.21	1.25
Merged-chr5-123153041-2	chr5	123152541	123153541	+	854.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 7 of 16)	MER3|DNA|hAT-Charlie	10848.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	20.02	13.36	12.02	28.34	13.53	15.27	13.73	10.17	14.36
Merged-chr7-127849303-2	chr7	127848805	127849805	+	854.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009294)	TTS (NM_009294)	7497.0	NM_009294	20909.0	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	68.65	51.61	37.0	169.35	72.31	114.94	192.23	138.4	93.68
Merged-chr2-29200055-2	chr2	29199570	29200570	+	854.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305805, intron 4 of 7)	intron (NM_001305805, intron 4 of 7)	48029.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	2.86	0.92	1.85	4.05	1.87	1.61	1.06	0.44	0.62
Merged-chr12-112593430-3	chr12	112592912	112593912	+	854.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	4628.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	60.64	45.16	61.05	33.06	24.26	42.6	32.74	26.97	19.36
Merged-chr11-116028486-3	chr11	116027941	116028941	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-1875.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	180.2	188.0	105.44	196.34	162.34	130.21	162.65	242.75	121.16
Merged-chr2-180043881-3	chr2	180043378	180044378	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	1395.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	17.73	18.43	10.17	18.22	18.66	11.25	25.35	20.78	30.6
Merged-chr10-67646838-3	chr10	67646346	67647346	+	854.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74887.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	86.95	44.24	51.8	56.68	35.92	24.92	49.64	59.69	33.72
Merged-chr7-30051378-3	chr7	30050890	30051890	+	854.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178733)	promoter-TSS (NM_178733)	6.0	NM_011748	243906.0	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	0.57	4.15	11.1	5.4	2.8	4.02	7.39	5.75	2.5
Merged-chr3-152406551-7	chr3	152406055	152407055	+	854.0872800000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	9871.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	48.05	62.21	28.67	44.53	50.38	70.73	45.42	37.58	41.22
Merged-chr14-70541163-2	chr14	70540671	70541671	+	854.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4080.0	NM_180588	72549.0	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	7.44	11.06	7.4	12.82	5.6	0.0	2.11	3.54	3.75
Merged-chr5-31602598-3	chr5	31602113	31603113	+	854.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11338.0	NM_025796	66845.0	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	12.59	5.07	3.7	14.84	13.53	32.96	20.07	16.8	16.24
Merged-chr8-95427796-3	chr8	95427279	95428279	+	854.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008187, intron 1 of 5)	intron (NM_008187, intron 1 of 5)	7090.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	30.89	41.93	38.85	42.51	27.06	34.56	29.57	39.35	21.23
Merged-chr6-4903642-2	chr6	4903137	4904137	+	854.0714109999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 1 of 15)	CpG	317.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	58.35	60.36	84.17	85.69	81.64	55.46	89.78	68.09	29.35
Merged-chr1-156537940-3	chr1	156537397	156538397	+	854.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20890.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	93.24	114.74	69.37	89.06	55.51	63.5	58.09	75.61	41.84
Merged-chr17-56251642-3	chr17	56251152	56252152	+	854.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5141.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	7.44	11.98	12.02	10.8	3.27	9.65	12.67	11.5	6.25
Merged-chr15-66823151-2	chr15	66822648	66823648	+	854.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	8681.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	10.3	11.98	3.7	15.52	4.67	18.49	8.45	7.52	6.25
Merged-chr4-43419146-3	chr4	43418627	43419627	+	854.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	ID_B1|SINE|B4	10007.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	143.01	134.09	110.07	123.47	122.23	112.53	81.33	105.68	61.83
Merged-chr2-58715087-3	chr2	58714572	58715572	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	L1MA4A|LINE|L1	-40112.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	20.02	20.27	11.1	14.84	7.46	9.65	15.84	19.9	8.74
Merged-chr4-120954556-1	chr4	120954056	120955056	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2855.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	9.72	4.15	12.02	13.49	13.06	19.29	3.17	7.52	10.62
Merged-chr1-149923852-1	chr1	149923352	149924352	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 2 of 17)	intron (NM_008869, intron 2 of 17)	-1413.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	16.59	9.68	10.17	18.89	14.93	30.54	17.96	7.07	21.23
Merged-chr5-114697679-1	chr5	114697179	114698179	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-6744.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	97.82	97.23	86.02	101.88	85.84	101.28	17.96	13.27	23.73
Merged-chr2-48001985-1	chr2	48001485	48002485	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-812124.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	4.0	3.69	7.4	2.7	3.73	1.61	3.17	8.84	2.5
Merged-chr1-43868608-1	chr1	43868108	43869108	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40900.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	7.44	3.23	1.85	10.8	8.4	4.82	5.28	8.4	9.37
Merged-chr2-74606290-1	chr2	74605790	74606790	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-27342.0	NM_027133	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	3.43	5.53	5.55	1.35	7.0	4.02	4.22	7.96	0.62
Merged-chr2-167222342-3	chr2	167221885	167222885	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 4 of 9)	intron (NM_008968, intron 4 of 9)	18152.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	10.87	5.07	5.55	5.4	4.67	9.65	4.22	2.65	0.0
Merged-chr13-41466377-2	chr13	41465877	41466877	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	20983.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	67.5	58.98	63.82	70.17	65.31	108.51	46.47	43.77	48.71
Merged-chr7-59248680-1	chr7	59248180	59249180	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011668, intron 4 of 12)	L1MB2|LINE|L1	19930.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	1.14	3.69	1.85	4.72	7.0	4.82	5.28	5.31	1.25
Merged-chr14-8002852-1	chr14	8002352	8003352	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001331065)	promoter-TSS (NM_001331065)	-36.0	NM_025341	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	13.16	5.07	11.1	4.72	4.67	6.43	5.28	0.44	1.25
Merged-chr12-85600531-1	chr12	85600031	85601031	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	513.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	144.16	131.78	130.42	163.28	103.1	177.64	183.78	158.3	122.41
Merged-chr13-112674258-1	chr13	112673758	112674758	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	13492.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	6.29	8.75	7.4	1.35	3.73	4.82	6.34	7.52	3.12
Merged-chr14-17539523-1	chr14	17539023	17540023	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121437.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.43	5.53	5.55	2.7	4.2	2.41	2.11	3.54	0.0
Merged-chr4-123423528-1	chr4	123423028	123424028	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11617.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	20.59	12.9	12.95	15.52	18.19	29.74	99.28	90.2	53.08
Merged-chr12-76813743-1	chr12	76813243	76814243	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134050, intron 1 of 6)	intron (NM_134050, intron 1 of 6)	113.0	NM_001347405	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	2.86	0.92	3.7	6.75	0.93	3.22	6.34	2.65	1.87
Merged-chr3-45378363-1	chr3	45377863	45378863	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098172)	promoter-TSS (NM_001098172)	-35.0	NM_001098172	18526.0	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	4.0	3.69	0.0	0.0	1.87	1.61	2.11	1.33	0.0
Merged-chr3-95676589-1	chr3	95676089	95677089	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_144899, exon 18 of 18)	3' UTR (NM_144899, exon 18 of 18)	11328.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	33.18	25.34	51.8	43.86	34.52	37.78	61.26	48.64	18.74
Merged-chr2-17788427-1	chr2	17787927	17788927	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57359.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	3.43	2.3	11.1	3.37	1.4	5.63	5.28	3.54	5.0
Merged-chr2-83676675-1	chr2	83676175	83677175	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32097.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	10.3	4.61	14.8	8.1	10.26	11.25	4.22	2.65	5.62
Merged-chr2-165926459-1	chr2	165925959	165926959	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-41621.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	16.02	7.83	9.25	14.84	7.93	12.06	6.34	5.75	5.62
Merged-chr10-8881392-1	chr10	8880892	8881892	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	ID_B1|SINE|B4	4678.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	197.36	161.74	166.49	214.56	139.02	153.52	164.76	208.7	96.18
Merged-chr18-10052404-1	chr18	10051904	10052904	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22255.0	NM_021522	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	4.0	2.3	0.0	7.42	5.13	3.22	8.45	3.54	4.37
Merged-chr12-102371231-1	chr12	102370731	102371731	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 6 of 9)	intron (NM_177620, intron 6 of 9)	68582.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	31.46	31.33	21.27	33.74	31.26	37.78	26.4	23.88	16.86
Merged-chr8-22806685-3	chr8	22806188	22807188	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-1034.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	106.4	147.91	97.12	85.69	67.64	81.18	157.37	222.41	114.91
Merged-chr7-19202642-1	chr7	19202142	19203142	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 19 of 21)	intron (NM_001347582, intron 19 of 21)	-9896.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	8.58	6.91	7.4	6.07	3.73	6.43	20.07	7.52	8.74
Merged-chr10-94515314-2	chr10	94514817	94515817	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	CpG	460.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	96.11	82.02	111.92	130.9	109.16	106.1	79.21	66.33	30.6
Merged-chr2-129626069-3	chr2	129625565	129626565	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	30603.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	32.04	27.65	28.67	22.94	17.73	16.08	12.67	19.01	25.61
Merged-chr14-50998574-1	chr14	50998074	50999074	+	854.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9177.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	2.86	5.07	12.95	9.45	12.6	8.04	9.51	6.19	5.62
Merged-chr19-8980966-3	chr19	8980468	8981468	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8316.0	NR_104460	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	10.3	6.45	10.17	17.54	7.93	13.66	11.62	4.42	16.24
Merged-chr1-23380646-1	chr1	23380146	23381146	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	L2|LINE|L2	2529.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	77.8	85.25	54.57	80.97	81.64	54.66	76.05	65.0	69.95
Merged-chr11-48776853-1	chr11	48776353	48777353	+	854.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23507.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	2.86	1.38	5.55	4.05	3.27	2.41	4.22	1.33	4.37
Merged-chr3-15848580-3	chr3	15848070	15849070	+	854.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173459)	promoter-TSS (NM_001173459)	-83.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	22.88	34.1	24.97	44.53	82.11	24.11	73.93	60.58	46.22
Merged-chr6-52411413-3	chr6	52410917	52411917	+	853.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81034.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	6.29	6.91	3.7	10.8	9.33	13.66	3.17	7.52	2.5
Merged-chr6-136930948-3	chr6	136930430	136931430	+	853.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301308, intron 2 of 4)	intron (NM_001301308, intron 2 of 4)	8597.0	NM_001301303	11857.0	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	17.16	11.52	12.02	6.07	5.6	7.23	22.18	11.5	8.74
Merged-chr14-61799442-3	chr14	61798957	61799957	+	853.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117084.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	37.18	51.61	23.12	47.9	37.79	53.05	32.74	46.43	22.48
Merged-chr9-104764100-2	chr9	104763593	104764593	+	853.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	GA-rich|Low_complexity|Low_complexity	194610.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	8.58	8.29	24.97	8.77	4.67	6.43	10.56	2.65	5.62
Merged-chr5-99202897-5	chr5	99202390	99203390	+	853.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50037.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	35.47	43.31	34.22	51.28	57.38	28.13	47.53	57.92	29.98
Merged-chr18-37984489-3	chr18	37983984	37984984	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139206, intron 18 of 32)	intron (NM_139206, intron 18 of 32)	6461.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	5.15	3.23	3.7	4.72	4.2	4.82	5.28	0.44	5.62
Merged-chr7-114117098-3	chr7	114116598	114117598	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	CpG	683.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	12.59	7.83	21.27	39.81	14.0	19.29	21.12	8.84	11.87
Merged-chr11-8610662-3	chr11	8610184	8611184	+	853.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	53851.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	138.44	108.75	112.84	111.33	96.57	51.44	74.99	74.73	66.2
Merged-chr9-57439717-2	chr9	57439222	57440222	+	853.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357913)	promoter-TSS (NM_001357913)	14.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	77.8	87.55	58.27	75.57	82.11	93.24	84.49	106.12	67.45
Merged-chr11-69368866-3	chr11	69368429	69369429	+	853.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	CpG	497.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	194.5	148.37	217.36	178.8	141.82	166.38	278.83	188.36	108.67
Merged-chr14-65097982-5	chr14	65097402	65098402	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018788, intron 1 of 6)	CpG	204.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	124.14	135.47	118.39	106.61	93.3	97.26	103.51	88.43	92.43
Merged-chr15-99126521-5	chr15	99126024	99127024	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139140)	promoter-TSS (NM_139140)	-321.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	86.38	49.76	49.02	242.9	101.23	160.76	174.27	87.99	94.93
Merged-chr17-47328971-3	chr17	47328449	47329449	+	853.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 13 of 19)	intron (NM_001097623, intron 13 of 19)	-39938.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	5.72	2.3	5.55	2.7	5.13	5.63	4.22	3.1	8.74
Merged-chr9-96554759-3	chr9	96554261	96555261	+	853.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053268, intron 17 of 23)	intron (NM_053268, intron 17 of 23)	-76086.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.86	11.06	13.87	14.17	12.13	11.25	6.34	15.03	6.25
Merged-chr9-89200524-3	chr9	89200039	89201039	+	853.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	1266.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	106.4	119.34	44.4	78.94	74.64	69.93	79.21	73.84	46.84
Merged-chr12-86078605-3	chr12	86078102	86079102	+	853.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009368, exon 1 of 7)	5' UTR (NM_009368, exon 1 of 7)	439.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	52.63	38.25	45.32	48.58	56.91	40.19	40.14	55.27	27.48
Merged-chr2-157204656-6	chr2	157204121	157205121	+	853.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	-87.0	NM_001139516	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	81.8	83.86	70.3	72.87	59.71	76.36	90.83	93.3	35.6
Merged-chr5-105662835-1	chr5	105662335	105663335	+	853.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-37134.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	91.53	88.47	37.0	124.82	97.5	77.16	12.67	8.4	5.0
Merged-chr19-45574052-2	chr19	45573534	45574534	+	853.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172639, intron 4 of 5)	intron (NM_172639, intron 4 of 5)	13449.0	NM_172639	226162.0	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	Ndac	deleted in primary ciliary dyskinesia	protein-coding	1.72	1.38	0.92	2.7	2.8	3.22	4.22	2.65	1.25
Merged-chr14-61046543-2	chr14	61046048	61047048	+	853.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013869, exon 1 of 10)	5' UTR (NM_013869, exon 1 of 10)	307.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	5.15	3.23	0.0	4.72	2.8	1.61	12.67	3.54	4.37
Merged-chr11-43729091-3	chr11	43728584	43729584	+	853.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133795)	TTS (NM_133795)	18889.0	NM_133795	66827.0	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	16.02	10.14	12.95	16.19	15.39	14.47	7.39	11.5	18.74
Merged-chr17-51408550-3	chr17	51408062	51409062	+	853.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	39707.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	31.46	18.43	27.75	14.84	13.53	20.9	30.63	29.18	21.23
Merged-chr19-41313911-3	chr19	41313401	41314401	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-49897.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	12.01	9.68	8.32	10.8	7.46	15.27	13.73	11.5	5.62
Merged-chr7-101821756-3	chr7	101821261	101822261	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001122739)	TTS (NM_001122739)	3448.0	NM_008887	11859.0	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	9.72	7.83	6.47	14.17	7.46	6.43	3.17	0.88	5.62
Merged-chr10-67620203-3	chr10	67619712	67620712	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-48253.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	22.31	10.14	12.02	15.52	14.46	8.04	13.73	4.86	12.49
Merged-chr7-98803397-3	chr7	98802892	98803892	+	853.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31720.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.72	4.61	1.85	4.72	5.6	0.0	2.11	1.77	4.37
Merged-chr10-21855489-3	chr10	21854968	21855968	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26716.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	9.15	5.99	3.7	11.47	10.26	10.45	14.79	9.73	14.36
Merged-chr18-36285170-1	chr18	36284670	36285670	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	4008.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	23.45	47.0	43.47	37.78	19.13	28.13	35.91	35.82	29.35
Merged-chr6-32570054-1	chr6	32569554	32570554	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	18138.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	5.72	2.3	0.0	6.07	3.27	1.61	1.06	0.44	9.99
Merged-chr2-84602398-1	chr2	84601898	84602898	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007615, exon 20 of 20)	3' UTR (NM_007615, exon 20 of 20)	47082.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	24.6	18.89	25.9	20.92	12.6	28.13	23.24	22.55	34.35
Merged-chr17-71310169-1	chr17	71309669	71310669	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357336, exon 2 of 8)	exon (NM_001357336, exon 2 of 8)	842.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	74.94	59.44	49.95	83.66	95.17	105.3	35.91	23.88	23.11
Merged-chr14-101542579-3	chr14	101542081	101543081	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	66610.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	3.43	5.07	3.7	4.05	3.27	3.22	7.39	7.96	3.75
Merged-chr6-39243603-1	chr6	39243103	39244103	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36830.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	16.59	8.29	7.4	23.62	23.33	20.09	14.79	5.75	5.0
Merged-chr8-94923622-2	chr8	94923130	94924130	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145972)	promoter-TSS (NM_001145972)	-64.0	NM_001033468	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	13.16	5.07	1.85	6.07	4.2	0.0	4.22	1.77	6.87
Merged-chr6-15793712-3	chr6	15793193	15794193	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	73032.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	60.64	68.2	47.17	30.36	34.99	36.97	66.54	68.98	21.86
Merged-chr10-77713919-1	chr10	77713419	77714419	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	-1888.0	NM_001205035	100502921.0	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	-	predicted gene 10142	protein-coding	5.15	5.99	11.1	6.07	3.27	3.22	1.06	3.54	5.0
Merged-chr6-83637359-3	chr6	83636838	83637838	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18778.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	136.72	211.04	134.12	191.62	256.58	191.3	200.68	271.93	123.03
Merged-chr12-42181841-1	chr12	42181341	42182341	+	853.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-695784.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.86	3.69	5.55	5.4	6.06	4.82	1.06	5.31	1.25
Merged-chr14-62328603-3	chr14	62328098	62329098	+	853.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3470.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	15.45	6.91	6.47	19.57	5.6	11.25	25.35	15.92	2.5
Merged-chr17-71137236-3	chr17	71136749	71137749	+	853.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46283.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	65.79	35.48	37.0	52.63	43.85	42.6	46.47	53.5	19.98
Merged-chr16-57555130-3	chr16	57554613	57555613	+	853.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	5871.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	68.07	100.91	38.85	91.76	61.58	65.91	90.83	95.07	56.83
Merged-chr9-88548033-3	chr9	88547514	88548514	+	853.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-6.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	21.74	32.72	25.9	26.99	27.06	32.96	28.52	35.37	31.23
Merged-chr5-18010559-3	chr5	18010062	18011062	+	853.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	47992.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	35.47	31.79	26.82	31.71	22.39	28.13	60.2	47.75	38.72
Merged-chr16-30504233-3	chr16	30503750	30504750	+	853.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	46328.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	7.44	4.61	9.25	4.72	3.73	1.61	6.34	3.98	1.25
Merged-chr9-67838908-2	chr9	67838399	67839399	+	853.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1497.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	16.02	24.88	34.22	16.19	19.59	20.09	11.62	1.33	6.25
Merged-chr6-145351456-3	chr6	145350922	145351922	+	853.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36203.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	56.63	52.53	72.15	66.8	61.11	83.59	40.14	46.87	53.08
Merged-chr1-171053565-3	chr1	171053050	171054050	+	853.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356511, intron 4 of 4)	intron (NM_001356511, intron 4 of 4)	5844.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	20.59	24.42	27.75	29.69	34.52	36.17	46.47	30.95	24.36
Merged-chr12-110458814-3	chr12	110458295	110459295	+	853.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	L1MA5A|LINE|L1	11616.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	53.77	43.77	61.97	74.89	87.24	71.54	77.1	79.59	65.58
Merged-chr5-102072249-3	chr5	102071759	102072759	+	853.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2338.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	73.79	66.35	31.45	95.14	66.24	58.68	101.39	107.45	43.09
Merged-chr8-106556335-2	chr8	106555841	106556841	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007665, exon 16 of 16)	3' UTR (NM_007665, exon 16 of 16)	-30802.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	8.58	3.23	5.55	4.05	2.8	6.43	3.17	0.88	2.5
Merged-chr7-123465825-3	chr7	123465322	123466322	+	853.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007474, intron 4 of 5)	intron (NM_007474, intron 4 of 5)	3528.0	NM_001109045	11833.0	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	6.86	3.23	1.85	4.72	1.4	1.61	3.17	0.44	7.49
Merged-chr7-47081447-3	chr7	47080962	47081962	+	853.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163565, intron 11 of 13)	intron (NM_001163565, intron 11 of 13)	1762.0	NR_106023	102465639.0		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	48.05	40.55	19.42	45.21	30.79	48.23	57.03	44.66	14.99
Merged-chr17-74807534-1	chr17	74807034	74808034	+	853.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	89784.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.29	3.23	11.1	3.37	3.73	1.61	21.12	20.34	9.37
Merged-chr13-67831113-2	chr13	67830615	67831615	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045194)	promoter-TSS (NR_045194)	9.0	NM_001309374	102637366.0	Mm.121460	NM_001015506	ENSMUSG00000058246	Gm10037	EG328280|Rslcan24	predicted gene 10037	protein-coding	11.44	10.6	1.85	9.45	10.73	6.43	120.41	133.09	56.83
Merged-chr6-137541413-1	chr6	137540913	137541913	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-21518.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	5.72	3.69	3.7	6.75	1.87	9.65	1.06	3.54	11.24
Merged-chr5-43360554-1	chr5	43360054	43361054	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125200.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	2.86	2.3	1.85	4.05	1.4	3.22	1.06	0.44	1.25
Merged-chr2-3349138-2	chr2	3348637	3349637	+	853.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	12969.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	5.72	5.07	1.85	1.35	0.93	3.22	1.06	4.86	1.87
Merged-chr16-76408381-3	chr16	76407878	76408878	+	853.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-34551.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	28.03	19.35	17.57	16.19	8.86	5.63	43.3	19.01	8.74
Merged-chr10-8072724-3	chr10	8072194	8073194	+	853.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31B|LTR|ERV1	-116571.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	20.59	14.28	4.62	14.17	13.53	18.49	16.9	14.59	12.49
Merged-chr5-140382869-3	chr5	140382356	140383356	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	6452.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	51.48	43.31	37.92	39.13	34.06	32.96	30.63	16.8	30.6
Merged-chr12-85342493-3	chr12	85342014	85343014	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026775, exon 5 of 5)	3' UTR (NM_026775, exon 5 of 5)	-3152.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	41.76	52.99	24.97	34.41	20.99	36.97	109.84	125.13	85.56
Merged-chr4-119118996-3	chr4	119118502	119119502	+	853.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 1 of 9)	intron (NM_011400, intron 1 of 9)	10257.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	33.18	28.57	44.4	13.49	26.12	25.72	42.25	41.56	32.48
Merged-chr13-91509734-2	chr13	91509238	91510238	+	853.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48641.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	36.61	23.04	17.57	16.87	8.86	12.86	0.0	1.77	1.25
Merged-chr5-121845546-2	chr5	121845040	121846040	+	853.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3457.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	33.18	13.36	5.55	33.06	18.19	34.56	10.56	10.61	8.74
Merged-chr1-173350101-1	chr1	173349601	173350601	+	853.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16598.0	NM_010045	13349.0	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	4.0	1.38	9.25	2.7	1.4	4.82	2.11	4.42	0.0
Merged-chr8-85034860-3	chr8	85034361	85035361	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2054.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	24.03	34.56	24.97	20.92	26.12	36.97	58.09	50.41	43.09
Merged-chr1-180215247-3	chr1	180214754	180215754	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19234.0	NM_001359268	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	5.15	3.69	3.7	1.35	3.27	5.63	3.17	2.21	3.75
Merged-chr18-84684206-3	chr18	84683696	84684696	+	853.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	1506.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	64.07	45.62	23.12	39.13	31.72	48.23	45.42	38.91	30.6
Merged-chr4-135318187-2	chr4	135317688	135318688	+	853.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35026.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	17.16	8.75	9.25	11.47	4.2	8.04	6.34	3.54	4.37
Merged-chr12-76371512-2	chr12	76370997	76371997	+	853.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1231.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	103.54	90.77	111.92	101.88	74.64	77.97	97.17	109.66	91.18
Merged-chr15-97373346-3	chr15	97372876	97373876	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-126089.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	163.61	143.76	105.44	186.22	174.47	145.49	247.15	273.26	119.28
Merged-chr1-14505001-1	chr1	14504501	14505501	+	853.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194802.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	4.0	2.3	1.85	2.7	2.33	0.8	6.34	0.44	1.25
Merged-chr13-17983379-3	chr13	17982902	17983902	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9949.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	12.01	11.06	9.25	13.49	13.06	6.43	25.35	21.22	9.99
Merged-chr7-28716773-3	chr7	28716276	28717276	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015796)	promoter-TSS (NM_015796)	-6.0	NM_001310687	50760.0	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	45.19	36.86	20.35	56.0	36.39	34.56	15.84	8.4	8.74
Merged-chr15-97849656-4	chr15	97849115	97850115	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5113.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	28.6	35.48	16.65	37.11	20.99	21.7	16.9	14.15	5.0
Merged-chr9-44258443-3	chr9	44257948	44258948	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178420, intron 6 of 9)	intron (NM_178420, intron 6 of 9)	-6984.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	21.17	13.36	24.05	27.66	16.33	38.58	19.01	13.71	13.74
Merged-chr2-120362890-3	chr2	120362401	120363401	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001110496, exon 17 of 20)	exon (NM_001110496, exon 17 of 20)	-9764.0	NM_147153	269338.0	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	32.61	24.88	20.35	25.64	19.13	40.19	29.57	33.16	23.11
Merged-chr16-38451966-1	chr16	38451466	38452466	+	853.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007414, intron 1 of 3)	intron (NM_007414, intron 1 of 3)	723.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	27.46	17.05	28.67	23.62	14.93	27.33	43.3	24.32	29.35
Merged-chr6-115697907-3	chr6	115697385	115698385	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21250.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	57.21	58.52	25.9	57.35	55.51	26.53	50.7	66.33	36.22
Merged-chr15-98792840-3	chr15	98792335	98793335	+	853.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021279, exon 4 of 4)	exon (NM_021279, exon 4 of 4)	2978.0	NM_021279	22408.0	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	11.44	3.23	3.7	8.77	3.27	0.8	10.56	3.98	5.0
Merged-chr10-3976437-1	chr10	3975937	3976937	+	853.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	3362.0	NM_172308	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	10.3	9.68	12.95	14.17	6.06	4.82	11.62	3.54	3.75
Merged-chr19-46979108-3	chr19	46978610	46979610	+	853.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	RSINE1|SINE|B4	-9543.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	32.04	13.82	1.85	50.6	29.39	20.9	9.51	16.36	5.0
Merged-chr8-70765979-2	chr8	70765468	70766468	+	853.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023065, intron 1 of 7)	intron (NM_023065, intron 1 of 7)	695.0	NM_023065	65972.0	Mm.30241	NM_023065		Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	257.42	176.02	151.69	240.87	152.55	225.06	285.17	269.28	155.51
Merged-chr6-146479373-2	chr6	146478850	146479850	+	853.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	22873.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	10.3	9.22	1.85	12.82	10.26	12.86	2.11	1.33	5.0
Merged-chr18-34416082-3	chr18	34415582	34416582	+	853.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016927, intron 4 of 14)	intron (NM_016927, intron 4 of 14)	6659.0	NM_016927	53871.0	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	16.02	8.75	0.0	9.45	11.66	9.65	7.39	6.19	6.25
Merged-chr5-54211939-3	chr5	54211443	54212443	+	853.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138049.0	NR_038045	330086.0	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13	predicted gene 10440	ncRNA	5.72	5.07	3.7	8.77	7.0	10.45	6.34	6.63	1.87
Merged-chr1-154118608-3	chr1	154118124	154119124	+	853.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82563.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	80.66	82.48	66.6	80.97	58.78	75.56	59.15	72.96	53.71
Merged-chr2-56305094-2	chr2	56304593	56305593	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-480718.0	NR_105751	102465169.0		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.57	0.46	0.0	7.42	1.4	6.43	4.22	0.88	2.5
Merged-chr14-14706609-2	chr14	14706046	14707046	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360513, intron 1 of 25)	intron (NM_001360513, intron 1 of 25)	3521.0	NM_001360509	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	20.02	20.27	20.35	22.94	12.13	24.92	12.67	15.48	12.49
Merged-chr11-43470346-1	chr11	43469846	43470846	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3960.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	5.15	7.37	5.55	6.75	11.2	8.04	2.11	3.54	0.0
Merged-chr17-69197898-2	chr17	69197418	69198418	+	853.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	38562.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	25.17	34.56	30.52	21.59	12.6	24.11	30.63	39.8	13.74
Merged-chr13-52628714-3	chr13	52628188	52629188	+	853.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	31806.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	15.45	7.83	13.87	10.8	7.46	17.68	9.51	11.5	7.49
Merged-chr7-79821670-3	chr7	79821178	79822178	+	853.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008486)	TTS (NM_008486)	10951.0	NM_008589	17293.0	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	11.44	5.53	1.85	7.42	5.6	11.25	11.62	4.86	3.75
Merged-chr9-59659951-3	chr9	59659438	59660438	+	853.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	3570.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	40.62	34.56	35.15	44.53	39.65	69.13	35.91	39.8	40.59
Merged-chr10-67599562-3	chr10	67599055	67600055	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-27596.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	200.79	154.82	86.95	232.78	248.18	162.37	125.69	192.78	93.05
Merged-chr1-152015776-3	chr1	152015264	152016264	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	74556.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.72	8.29	7.4	3.37	3.27	10.45	7.39	7.07	6.25
Merged-chr10-87817035-3	chr10	87816556	87817556	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41209.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	22.88	13.36	7.4	21.59	34.06	26.53	19.01	18.57	8.74
Merged-chr3-16210756-3	chr3	16210239	16211239	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172677, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	27574.0	NM_172677	229096.0	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	20.02	35.94	22.2	22.27	24.72	28.13	13.73	33.16	20.61
Merged-chr6-97408065-3	chr6	97407506	97408506	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	ORR1A4-int|LTR|ERVL-MaLR	51280.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	65.79	47.46	52.72	69.5	54.58	58.68	51.75	67.65	36.85
Merged-chr11-55020637-1	chr11	55020137	55021137	+	853.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_138556, intron 2 of 24)	intron (NR_138556, intron 2 of 24)	12834.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	25.74	29.03	26.82	8.77	3.27	1.61	6.34	6.63	11.24
Merged-chr16-30388139-2	chr16	30387585	30388585	+	853.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128096, intron 1 of 33)	CpG	445.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	211.66	155.75	178.52	155.19	126.89	137.45	209.12	142.82	111.79
Merged-chr10-117897961-3	chr10	117897454	117898454	+	853.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27505.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	93.82	96.3	63.82	97.16	73.24	76.36	73.93	72.96	50.59
Merged-chr16-24193542-3	chr16	24193068	24194068	+	853.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110878.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	10.87	3.23	2.77	11.47	24.26	4.82	8.45	1.77	5.0
Merged-chr18-83423233-3	chr18	83422735	83423735	+	853.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97351.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	23.45	15.21	29.6	41.83	39.19	38.58	46.47	46.87	29.35
Merged-chr17-24896488-3	chr17	24895993	24896993	+	853.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019730)	promoter-TSS (NM_019730)	-7.0	NM_019730	79059.0	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	21.17	12.44	11.1	13.49	7.93	44.21	27.46	11.5	20.61
Merged-chr3-142278269-2	chr3	142277753	142278753	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 7 of 12)	intron (NM_001190854, intron 7 of 12)	-108828.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.58	8.75	1.85	5.4	7.0	9.65	64.43	63.67	67.45
Merged-chrX-150440998-1	chrX	150440498	150441498	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164686)	promoter-TSS (NM_001164686)	-93.0	NM_001164686	382245.0	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.57	2.76	0.0	0.67	3.27	3.22	3.17	1.33	1.25
Merged-chr2-19716067-2	chr2	19715559	19716559	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57997.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	3.43	1.38	9.25	4.72	0.93	0.0	1.06	1.77	7.49
Merged-chr8-79475317-1	chr8	79474817	79475817	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-75849.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	3.43	2.76	3.7	5.4	4.67	3.22	3.17	1.77	1.87
Merged-chr17-10703506-1	chr17	10703006	10704006	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	136685.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	14.3	11.52	15.72	95.14	124.56	98.06	10.56	10.17	5.0
Merged-chr5-140116733-1	chr5	140116233	140117233	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	B4A|SINE|B4	58185.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	138.44	113.81	119.32	161.26	122.69	108.51	124.63	112.31	68.07
Merged-chr11-108425600-1	chr11	108425100	108426100	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029606, intron 1 of 27)	CpG	334.0	NM_029606	76380.0	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	26.31	23.04	5.55	25.64	10.73	17.68	26.4	17.69	8.74
Merged-chr19-61080495-1	chr19	61079995	61080995	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 10 of 15)	intron (NM_018869, intron 10 of 15)	60345.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.58	2.76	3.7	8.1	2.33	9.65	2.11	3.1	6.25
Merged-chrX-167106111-1	chrX	167105611	167106611	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35741.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	20.02	20.27	22.2	22.94	21.93	24.11	21.12	19.9	16.86
Merged-chr13-91387976-1	chr13	91387476	91388476	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045161, exon 1 of 3)	non-coding (NR_045161, exon 1 of 3)	109.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	5.15	3.69	2.77	2.02	3.27	1.61	2.11	3.54	0.0
Merged-chr6-92942153-1	chr6	92941653	92942653	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	1571.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.43	14.28	3.7	34.41	60.18	43.4	1.06	1.77	1.87
Merged-chr13-51100645-1	chr13	51100145	51101145	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029463)	promoter-TSS (NR_029463)	82.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	73.22	71.88	90.65	82.99	58.78	80.38	120.41	59.25	70.57
Merged-chr10-41587132-1	chr10	41586632	41587632	+	853.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 32 of 47)	intron (NM_001358562, intron 32 of 47)	19116.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	49.77	43.31	38.85	23.62	29.86	14.47	39.08	42.45	27.48
Merged-chr4-33242237-1	chr4	33241737	33242737	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6550.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	9.15	16.59	15.72	14.84	8.4	20.9	8.45	4.42	11.87
Merged-chr7-118703936-2	chr7	118703446	118704446	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	intron (NM_019580, intron 1 of 5)	1792.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	188.21	153.9	71.22	233.45	210.86	127.0	411.91	480.64	164.25
Merged-chr6-40435245-2	chr6	40434829	40435829	+	853.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	CpG	806.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	8.58	0.46	7.4	1.35	1.87	1.61	3.17	1.77	1.25
Merged-chr11-21369745-1	chr11	21369245	21370245	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290634, intron 1 of 9)	intron (NM_001290634, intron 1 of 9)	884.0	NM_139297	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	22.31	20.74	27.75	45.88	42.92	44.21	25.35	26.97	13.74
Merged-chr17-51178238-1	chr17	51177738	51178738	+	853.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1114.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	173.33	196.75	127.64	199.72	186.14	168.8	254.54	208.26	124.91
Merged-chr15-62071506-3	chr15	62071018	62072018	+	852.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	32261.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	12.01	10.6	24.05	3.37	7.0	13.66	4.22	5.75	13.74
Merged-chr19-8993023-3	chr19	8992518	8993518	+	852.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	3734.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	2.86	4.61	2.77	6.75	4.2	3.22	4.22	1.77	2.5
Merged-chr10-128909603-5	chr10	128909036	128910036	+	852.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007653)	promoter-TSS (NM_007653)	191.0	NM_001282966	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	16.59	7.83	3.7	66.8	58.31	50.64	7.39	4.86	0.0
Merged-chr18-46450889-2	chr18	46450389	46451389	+	852.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14927.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	18.31	13.36	3.7	7.42	8.86	18.49	24.29	12.38	16.24
Merged-chr10-60350531-2	chr10	60350012	60351012	+	852.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	3661.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	152.17	144.69	79.55	149.11	120.36	77.16	208.07	212.24	91.81
Merged-chr17-84099848-3	chr17	84099344	84100344	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21184.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	47.48	37.32	30.52	50.6	49.45	44.21	44.36	34.49	36.85
Merged-chr13-19828270-3	chr13	19827763	19828763	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4006.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	6.29	9.68	0.0	6.75	7.0	6.43	5.28	6.19	11.24
Merged-chr8-115611642-3	chr8	115611140	115612140	+	852.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	95254.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	73.79	96.3	53.65	70.85	77.44	74.75	96.11	82.24	97.43
Merged-chr9-13555823-3	chr9	13555310	13556310	+	852.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64179.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	17.16	13.82	6.47	10.12	5.6	7.23	17.96	12.82	5.0
Merged-chr19-53566011-2	chr19	53565500	53566500	+	852.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34396.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	4.58	4.61	6.47	13.49	7.0	2.41	3.17	2.65	5.0
Merged-chr8-79150693-3	chr8	79150200	79151200	+	852.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	97883.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	2.86	3.69	1.85	2.02	4.67	1.61	8.45	3.1	3.75
Merged-chr1-178463886-3	chr1	178463380	178464380	+	852.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026626, intron 3 of 6)	ERV3-16A3_I-int|LTR|ERVL	57862.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	5.72	3.69	0.0	6.07	2.33	3.22	1.06	3.1	1.25
Merged-chr8-90841667-3	chr8	90841177	90842177	+	852.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12842.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	44.05	38.71	54.57	37.78	32.66	51.44	42.25	40.24	37.47
Merged-chr10-94639458-1	chr10	94638958	94639958	+	852.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	49155.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	7.44	6.91	1.85	12.82	9.33	4.02	4.22	9.29	1.25
Merged-chr11-71159960-1	chr11	71159460	71160460	+	852.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040696, intron 12 of 14)	intron (NM_001040696, intron 12 of 14)	-15256.0	NM_001004142	195046.0	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	8.58	10.14	12.95	23.62	16.33	23.31	5.28	10.61	8.12
Merged-chr2-53000506-3	chr2	53000048	53001048	+	852.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	142680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	18.88	16.59	9.25	19.57	14.0	20.09	17.96	8.84	9.99
Merged-chr13-93898720-2	chr13	93898209	93899209	+	852.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	107932.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	16.02	6.45	7.4	20.92	21.93	12.06	7.39	1.77	3.75
Merged-chr13-41603591-3	chr13	41603054	41604054	+	852.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2662.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	252.85	319.32	135.97	218.61	217.39	151.11	248.2	318.8	164.88
Merged-chr16-21389250-3	chr16	21388673	21389673	+	852.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-33945.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	19.45	12.44	7.4	18.89	10.73	20.9	19.01	21.67	9.99
Merged-chr15-12205527-1	chr15	12205027	12206027	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	CpG	499.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	182.49	116.12	114.69	159.91	93.3	75.56	125.69	61.02	65.58
Merged-chr4-130914859-3	chr4	130914344	130915344	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	MIR3|SINE|MIR	1510.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	244.84	249.28	180.37	236.83	212.73	171.21	266.16	268.84	153.01
Merged-chr11-117873429-3	chr11	117872950	117873950	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027919)	promoter-TSS (NM_027919)	76.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	59.49	41.47	24.05	75.57	49.92	60.28	52.81	32.72	13.74
Merged-chr7-44983307-3	chr7	44982805	44983805	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252476, intron 2 of 9)	intron (NM_001252476, intron 2 of 9)	3115.0	NM_001252476	15469.0	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	4.0	6.45	8.32	4.72	3.27	1.61	2.11	0.88	5.0
Merged-chr12-110465071-1	chr12	110464571	110465571	+	852.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	17892.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	7.44	4.15	7.4	23.62	24.72	12.86	14.79	21.67	6.25
Merged-chr11-20151503-3	chr11	20150997	20151997	+	852.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-38546.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	6.86	2.3	9.25	5.4	4.2	3.22	8.45	1.77	11.24
Merged-chr12-84784690-3	chr12	84784183	84785183	+	852.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 34 of 34)	intron (NM_013589, intron 34 of 34)	11413.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	1.72	1.38	3.7	5.4	0.93	1.61	3.17	0.0	0.0
Merged-chr6-50303717-3	chr6	50303217	50304217	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 18 of 21)	L1MA8|LINE|L1	-41948.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	38.9	44.7	49.02	36.43	37.79	32.15	47.53	45.54	30.6
Merged-chr7-44892574-6	chr7	44892071	44893071	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029365)	promoter-TSS (NM_029365)	-147.0	NM_001331206	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	260.28	261.73	214.59	165.98	187.07	155.93	182.72	186.59	120.53
Merged-chr14-66186268-3	chr14	66185785	66186785	+	852.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	27539.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	108.69	98.15	78.62	79.62	51.32	48.23	101.39	111.43	66.2
Merged-chr6-137387136-3	chr6	137386633	137387633	+	852.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 7 of 26)	intron (NM_011216, intron 7 of 26)	-23588.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	22.88	34.1	27.75	17.54	12.13	37.78	24.29	16.8	24.98
Merged-chr1-138275130-3	chr1	138274625	138275625	+	852.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177397, intron 1 of 2)	intron (NM_177397, intron 1 of 2)	1387.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	15.45	16.59	10.17	18.22	12.13	21.7	16.9	12.38	12.49
Merged-chr1-134073193-6	chr1	134072723	134073723	+	852.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5932.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	7.44	1.84	4.62	3.37	2.33	12.86	4.22	1.33	2.5
Merged-chr1-177443106-3	chr1	177442622	177443622	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355099, intron 1 of 1)	intron (NM_001355099, intron 1 of 1)	771.0	NM_001355100	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	25.17	12.44	24.97	20.24	8.86	22.51	21.12	12.38	18.74
Merged-chr14-19904181-3	chr14	19903695	19904695	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	65270.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	18.31	26.73	17.57	26.31	19.59	24.11	17.96	14.15	9.99
Merged-chr8-94812985-3	chr8	94812487	94813487	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011332)	TTS (NM_011332)	2534.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	4.58	4.61	2.77	4.72	2.33	4.82	5.28	2.65	4.37
Merged-chr7-27451450-3	chr7	27450961	27451961	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290525)	promoter-TSS (NM_001290525)	-957.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	24.03	31.79	33.3	29.01	26.12	31.35	55.98	57.48	31.85
Merged-chr18-68337451-3	chr18	68336950	68337950	+	852.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013596)	promoter-TSS (NM_013596)	-153.0	NM_013596	17203.0	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.57	3.23	1.85	0.0	1.4	0.0	3.17	3.1	3.75
Merged-chr5-139457654-2	chr5	139457105	139458105	+	852.5499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 1 of 4)	intron (NM_028469, intron 1 of 4)	2929.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	76.08	58.52	50.87	150.46	153.95	86.01	108.79	117.62	49.96
Merged-chrX-23365190-3	chrX	23364707	23365707	+	852.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026167)	promoter-TSS (NM_026167)	-125.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	14.3	12.9	16.65	17.54	7.0	25.72	12.67	14.15	16.24
Merged-chr10-81519743-3	chr10	81519245	81520245	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	4480.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	29.17	23.96	36.07	34.41	26.59	36.17	45.42	27.41	33.72
Merged-chr1-77203053-2	chr1	77202549	77203549	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	293719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	12.59	11.98	9.25	7.42	5.6	12.86	9.51	3.54	11.24
Merged-chr2-151542940-2	chr2	151542426	151543426	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126058, intron 2 of 3)	CpG-8654	443.0	NM_001302078	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	14.87	15.67	16.65	27.66	20.53	24.92	22.18	11.94	7.49
Merged-chr9-49051084-1	chr9	49050584	49051584	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-4497.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	38.33	44.7	37.92	68.15	62.98	40.19	9.51	4.42	6.87
Merged-chr18-79257560-1	chr18	79257060	79258060	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148169.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.86	4.15	9.25	3.37	2.33	5.63	6.34	2.21	6.25
Merged-chr1-92652090-1	chr1	92651590	92652590	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3249.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	7.44	7.37	6.47	12.14	3.73	8.84	4.22	0.88	6.25
Merged-chr2-167920111-3	chr2	167919634	167920634	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	29.17	11.98	18.5	23.62	12.6	18.49	13.73	8.4	9.37
Merged-chr1-125438142-3	chr1	125437634	125438634	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2407.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	17.73	35.48	43.47	32.39	31.26	42.6	40.14	43.33	33.72
Merged-chr8-46597545-2	chr8	46597015	46598015	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001184, intron 6 of 14)	RLTR25A|LTR|ERVK	19712.0	NM_001001184	408022.0	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	26.89	23.96	21.27	16.87	23.33	37.78	25.35	21.67	24.36
Merged-chr2-52539440-1	chr2	52538940	52539940	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	19171.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.57	5.07	9.25	5.4	4.2	3.22	6.34	1.77	8.74
Merged-chr4-126004223-3	chr4	126003717	126004717	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20442.0	NR_045561	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	3.43	5.07	1.85	3.37	2.33	2.41	5.28	2.21	13.12
Merged-chr4-44910321-2	chr4	44909822	44910822	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-71072.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	8.58	6.91	3.7	9.45	8.4	4.82	12.67	8.84	7.49
Merged-chr7-24886022-2	chr7	24885530	24886530	+	852.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360125, intron 3 of 5)	intron (NM_001360125, intron 3 of 5)	1117.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	34.32	32.72	49.95	19.57	14.0	37.78	40.14	27.41	16.24
Merged-chr11-23416721-1	chr11	23416221	23417221	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190401, intron 35 of 79)	L1MC4|LINE|L1	81318.0	NM_001290655	268390.0	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	1.72	9.22	12.02	6.75	7.93	9.65	10.56	17.24	7.49
Merged-chr1-157043551-1	chr1	157043051	157044051	+	852.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65099.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	16.02	15.67	14.8	20.92	13.53	24.92	9.51	9.73	9.37
Merged-chr8-84042397-4	chr8	84041938	84042938	+	852.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_173184)	TTS (NM_173184)	137.0	NM_016671	50931.0	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	8.01	3.23	10.17	6.75	7.46	6.43	8.45	6.63	3.75
Merged-chr8-105384385-3	chr8	105383868	105384868	+	852.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301173, intron 15 of 15)	intron (NM_001301173, intron 15 of 15)	8987.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	13.73	10.6	9.25	5.4	13.06	7.23	15.84	8.84	5.62
Merged-chrX-101769697-3	chrX	101769193	101770193	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24963.0	NM_001359671	382231.0	Mm.328112	NM_001359671	ENSMUSG00000046774	8030474K03Rik	Gm1142	RIKEN cDNA 8030474K03 gene	protein-coding	12.59	11.98	3.7	5.4	19.59	8.84	8.45	10.17	5.0
Merged-chr7-122922307-3	chr7	122921837	122922837	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	48122.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	48.05	17.51	31.45	25.64	19.13	52.25	48.58	35.37	25.61
Merged-chr8-46868417-3	chr8	46867918	46868918	+	852.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-118469.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	86.38	65.89	104.52	78.94	79.77	107.71	65.48	62.35	64.33
Merged-chrX-10318413-3	chrX	10317935	10318935	+	852.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008769, intron 9 of 9)	RLTR26_Mus|LTR|ERVK	66130.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	4.0	5.99	9.25	4.05	3.27	3.22	2.11	3.1	3.12
Merged-chr8-122702394-2	chr8	122701895	122702895	+	852.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3286.0	NM_009824	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	5.72	4.15	3.7	5.4	2.33	3.22	12.67	8.84	1.25
Merged-chr5-130129561-3	chr5	130129058	130130058	+	852.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013837, exon 4 of 6)	exon (NM_013837, exon 4 of 6)	-15330.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	8.58	7.37	7.4	10.8	8.86	10.45	12.67	9.73	11.24
Merged-chr16-97954443-3	chr16	97953968	97954968	+	852.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001320385, intron 1 of 2)	intron (NM_001320385, intron 1 of 2)	8154.0	NM_001081685	114565.0	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	12.59	24.88	31.45	18.89	22.39	42.6	27.46	18.57	15.61
Merged-chr3-68794592-2	chr3	68794083	68795083	+	852.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33088.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	9.72	11.52	12.95	4.72	7.93	12.86	4.22	5.75	6.25
Merged-chr3-51413505-2	chr3	51413003	51414003	+	852.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2513.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	12.59	23.04	13.87	20.24	17.26	39.39	22.18	10.61	16.24
Merged-chr4-149056048-3	chr4	149055540	149056540	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	43772.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	29.17	29.03	24.97	23.62	18.66	29.74	4.22	2.21	2.5
Merged-chr6-53448434-1	chr6	53447934	53448934	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-124940.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	1.14	1.84	1.85	4.72	3.73	1.61	4.22	3.54	5.62
Merged-chr1-120044888-1	chr1	120044388	120045388	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012322, intron 7 of 13)	intron (NM_001012322, intron 7 of 13)	28892.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	8.01	2.3	0.0	7.42	3.73	3.22	6.34	4.86	1.25
Merged-chr18-30508130-3	chr18	30507632	30508632	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	235267.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	64.64	82.48	62.9	37.78	37.79	24.92	55.98	72.07	28.1
Merged-chr6-47453817-1	chr6	47453317	47454317	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012042)	promoter-TSS (NM_012042)	85.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	116.7	98.15	84.17	96.48	70.91	68.32	86.61	63.67	56.83
Merged-chr11-70472959-1	chr11	70472459	70473459	+	852.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12975.0	NM_023158	66102.0	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	26.31	22.58	17.57	29.01	23.33	26.53	43.3	34.93	18.74
Merged-chr6-10154152-1	chr6	10153652	10154652	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	820226.0	NR_033776	57866.0	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	7.44	11.52	13.87	4.72	1.4	0.0	2.11	3.1	3.75
Merged-chr8-27264336-3	chr8	27263867	27264867	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	4040.0	NM_007918	13685.0	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	24.03	17.05	12.95	12.82	4.2	16.08	26.4	15.48	14.36
Merged-chr8-40307431-3	chr8	40306929	40307929	+	852.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030110)	promoter-TSS (NM_030110)	500.0	NR_106126	102466237.0		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	80.66	66.35	46.25	85.69	68.58	92.44	116.18	99.93	70.57
Merged-chr7-119880532-3	chr7	119880031	119881031	+	852.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	14927.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	14.87	24.88	24.97	23.62	23.33	14.47	35.91	36.26	23.11
Merged-chr13-64408270-3	chr13	64407835	64408835	+	852.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24218.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	6.29	7.37	3.7	8.1	4.67	3.22	28.52	5.31	1.25
Merged-chr4-149705565-2	chr4	149705069	149706069	+	852.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3940.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	49.2	44.24	49.95	56.68	19.13	36.97	128.85	120.71	89.93
Merged-chr3-129634599-1	chr3	129634099	129635099	+	852.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_130450, exon 5 of 5)	3' UTR (NM_130450, exon 5 of 5)	90487.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	14.3	7.37	8.32	17.54	19.59	12.86	22.18	17.24	18.74
Merged-chr4-59244501-3	chr4	59244020	59245020	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15531.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	126.42	117.96	105.44	103.23	82.11	102.08	156.32	208.7	109.29
Merged-chr1-179517105-3	chr1	179516601	179517601	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	940.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	21.17	19.35	5.55	26.99	25.66	36.97	25.35	39.35	9.37
Merged-chr6-38535219-3	chr6	38534730	38535730	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025363, intron 1 of 1)	intron (NM_025363, intron 1 of 1)	369.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	122.42	116.58	89.72	116.73	118.49	81.99	87.66	109.22	48.09
Merged-chr10-96373689-3	chr10	96373211	96374211	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147504.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	185.92	174.18	118.39	177.45	135.29	153.52	146.81	145.92	99.92
Merged-chr4-119339079-3	chr4	119338566	119339566	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270446, intron 5 of 9)	intron (NM_001270446, intron 5 of 9)	-18543.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	1.72	2.3	5.55	3.37	4.67	3.22	1.06	1.77	2.5
Merged-chr19-24301136-3	chr19	24300667	24301667	+	852.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-20581.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	6.86	3.69	5.55	0.0	4.2	1.61	5.28	1.77	5.62
Merged-chr7-16885399-4	chr7	16884853	16885853	+	852.2083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081655, exon 4 of 4)	exon (NM_001081655, exon 4 of 4)	-6433.0	NM_010320	14709.0	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	4.58	5.07	1.85	10.12	8.4	11.25	14.79	3.54	10.62
Merged-chr13-94296620-1	chr13	94296120	94297120	+	852.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10789.0	NM_001346609	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	103.54	88.93	79.55	102.56	124.56	79.58	120.41	121.6	48.71
Merged-chr14-99970385-3	chr14	99969888	99970888	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	179408.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	9.72	5.99	7.4	6.07	11.2	8.04	4.22	3.98	5.0
Merged-chr19-10944121-3	chr19	10943633	10944633	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023731, intron 2 of 3)	MIR|SINE|MIR	5133.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	22.31	10.14	10.17	4.72	3.27	9.65	15.84	17.69	9.37
Merged-chr3-93555337-3	chr3	93554812	93555812	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009112, intron 1 of 2)	CpG	195.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	8.01	7.83	3.7	2.02	7.46	3.22	6.34	4.42	1.25
Merged-chr4-95390732-3	chr4	95390229	95391229	+	852.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-166778.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	8.58	6.91	0.0	8.1	1.87	0.0	2.11	3.1	1.25
Merged-chr3-131271412-2	chr3	131270915	131271915	+	852.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008212, intron 1 of 7)	intron (NM_008212, intron 1 of 7)	686.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	29.17	18.89	21.27	28.34	25.19	35.37	21.12	15.03	9.37
Merged-chr10-80612098-2	chr10	80611598	80612598	+	852.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019575, intron 5 of 6)	intron (NM_019575, intron 5 of 6)	2838.0	NR_105877	102465550.0		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	19.45	17.97	32.37	17.54	10.73	21.7	23.24	15.03	16.86
Merged-chr10-7850807-2	chr10	7850311	7851311	+	852.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	14430.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	46.91	45.16	72.15	43.18	27.06	32.15	7.39	8.4	7.49
Merged-chr19-5151475-3	chr19	5150982	5151982	+	852.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 10 of 23)	intron (NM_153129, intron 10 of 23)	-33074.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	7.44	1.84	4.62	2.02	6.53	1.61	3.17	2.21	2.5
Merged-chr10-120702042-2	chr10	120701544	120702544	+	852.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63688.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	9.15	0.46	1.85	6.07	3.27	3.22	4.22	3.1	7.49
Merged-chr17-31296135-2	chr17	31295579	31296579	+	852.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242427)	promoter-TSS (NM_001242427)	-145.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	54.35	49.3	52.72	67.47	63.91	82.79	114.07	117.17	68.07
Merged-chr1-58860828-3	chr1	58860287	58861287	+	852.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58285.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	7.44	12.44	1.85	8.77	7.93	6.43	2.11	7.96	7.49
Merged-chr9-39910140-3	chr9	39909636	39910636	+	852.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146613, exon 1 of 1)	exon (NM_146613, exon 1 of 1)	331.0	NM_146613	258606.0	Mm.377588	NM_146613	ENSMUSG00000095390	Olfr229	MOR171-14|Olfr229-ps1|Olfr973|Olfr973-ps1	olfactory receptor 229	protein-coding	8.01	5.07	10.17	10.12	8.4	9.65	8.45	2.21	3.75
Merged-chr1-93754138-3	chr1	93753661	93754661	+	852.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174874)	promoter-TSS (NM_174874)	677.0	NM_025920	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	44.05	26.26	37.0	34.41	30.79	43.4	25.35	23.43	23.11
Merged-chr11-4388725-1	chr11	4388225	4389225	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029458, intron 10 of 10)	L1M4b|LINE|L1	52357.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	4.58	4.15	14.8	10.8	5.6	0.0	4.22	0.0	2.5
Merged-chrX-139550662-3	chrX	139550159	139551159	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175326, intron 13 of 13)	intron (NM_175326, intron 13 of 13)	-12681.0	NM_001254761	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	10.87	15.67	3.7	22.94	23.79	18.49	17.96	23.88	8.74
Merged-chr10-51530642-1	chr10	51530142	51531142	+	852.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	39744.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	120.7	155.28	61.05	136.29	146.02	143.07	167.93	174.66	99.3
Merged-chr9-106234183-2	chr9	106233684	106234684	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291835, exon 11 of 11)	exon (NM_001291835, exon 11 of 11)	11586.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	14.87	16.59	12.95	27.66	12.13	8.04	10.56	13.71	7.49
Merged-chr1-165193974-2	chr1	165193466	165194466	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	CpG	467.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	70.36	81.1	72.15	78.94	75.57	83.59	127.8	123.36	54.33
Merged-chrX-162642583-1	chrX	162642083	162643083	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	intron (NR_038088, intron 4 of 5)	1075.0	NM_001359103	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	5.15	2.3	0.0	12.82	7.93	1.61	0.0	0.44	1.25
Merged-chr4-144998416-1	chr4	144997916	144998916	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	105279.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.29	5.07	7.4	7.42	12.13	10.45	8.45	3.54	2.5
Merged-chr19-56801131-1	chr19	56800631	56801631	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170757, intron 7 of 14)	intron (NM_170757, intron 7 of 14)	12552.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	44.05	47.46	34.22	72.19	54.58	70.73	25.35	29.18	29.35
Merged-chr5-102055689-2	chr5	102055189	102056189	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	14232.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	151.02	156.67	100.82	168.68	115.23	124.59	166.88	217.55	116.16
Merged-chr1-176075609-2	chr1	176075107	176076107	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	138335.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	20.02	23.5	13.87	18.22	19.59	9.65	21.12	15.48	12.49
Merged-chr11-104448693-2	chr11	104448184	104449184	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	B2_Mm1t|SINE|B2	-6393.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	2.86	3.69	3.7	4.05	4.67	3.22	2.11	1.77	2.5
Merged-chr13-108297706-1	chr13	108297206	108298206	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18631.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	7.44	3.23	7.4	5.4	7.93	3.22	3.17	3.54	1.25
Merged-chr10-121033428-1	chr10	121032928	121033928	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011915)	promoter-TSS (NM_011915)	-576.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	6.86	0.92	5.55	2.7	0.0	0.0	5.28	3.98	8.74
Merged-chr1-77468856-1	chr1	77468356	77469356	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	MIR|SINE|MIR	27912.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	4.0	3.23	1.85	2.7	2.33	4.02	3.17	1.77	6.25
Merged-chr2-104693549-2	chr2	104693021	104694021	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177190, intron 5 of 9)	intron (NM_177190, intron 5 of 9)	18641.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	16.59	14.75	17.57	21.59	12.13	20.09	12.67	7.52	13.74
Merged-chr15-5856454-3	chr15	5855960	5856960	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	188244.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	16.59	9.22	10.17	6.75	13.53	16.88	11.62	7.52	16.24
Merged-chr13-107845066-1	chr13	107844566	107845566	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	44998.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	31.46	33.64	17.57	38.46	24.72	20.09	40.14	28.3	8.74
Merged-chr6-82041645-1	chr6	82041145	82042145	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145570)	promoter-TSS (NM_145570)	17.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	10.3	3.23	0.0	19.57	21.46	1.61	1.06	0.44	1.25
Merged-chr16-97062277-1	chr16	97061777	97062777	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031174, intron 1 of 32)	MTD|LTR|ERVL-MaLR	108458.0	NM_031174	13508.0	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	DS cell adhesion molecule	protein-coding	3.43	2.3	3.7	4.05	3.73	5.63	6.34	7.07	3.75
Merged-chr18-88735830-1	chr18	88735330	88736330	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158377.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.0	2.3	5.55	0.67	1.87	0.0	3.17	7.07	1.25
Merged-chr16-11875405-3	chr16	11874891	11875891	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 2 of 3)	intron (NM_146067, intron 2 of 3)	-25973.0	NR_033509	791359.0	Mm.227592	NR_033509	ENSMUSG00000055015	Gm9961	-	predicted gene 9961	ncRNA	8.01	1.84	1.85	3.37	3.73	4.02	8.45	0.88	0.0
Merged-chr5-8877322-1	chr5	8876822	8877822	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16399.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	4.0	2.76	0.0	3.37	4.2	3.22	0.0	0.44	3.12
Merged-chr4-72413503-1	chr4	72413003	72414003	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212259.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	14.87	18.43	21.27	19.57	16.79	28.94	9.51	11.05	18.11
Merged-chr7-53668438-1	chr7	53667938	53668938	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	223451.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	6.86	3.69	3.7	7.42	9.8	8.04	14.79	12.82	7.49
Merged-chr8-73352746-4	chr8	73352281	73353281	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010687, exon 1 of 15)	5' UTR (NM_010687, exon 1 of 15)	759.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	39.47	30.87	33.3	31.04	24.72	12.06	30.63	20.34	15.61
Merged-chr12-75818833-2	chr12	75818331	75819331	+	852.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	CpG	513.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	33.75	40.09	28.67	64.77	53.65	41.8	51.75	27.86	15.61
Merged-chr8-36094171-1	chr8	36093671	36094671	+	852.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	-657.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	11.44	2.76	0.0	8.1	5.6	13.66	4.22	7.52	0.62
Merged-chr7-118448735-3	chr7	118448233	118449233	+	851.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362179)	promoter-TSS (NM_001362179)	-511.0	NM_001362179	110058.0	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	5.72	4.15	1.85	9.45	0.47	1.61	4.22	1.77	1.87
Merged-chr15-58632359-4	chr15	58631903	58632903	+	851.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191024.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	74.37	46.54	54.57	59.38	66.71	50.64	46.47	61.02	33.1
Merged-chr11-70700766-3	chr11	70700270	70701270	+	851.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252485)	promoter-TSS (NM_001252485)	222.0	NM_153103	16562.0	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	137.86	137.31	111.92	180.15	151.15	100.47	159.48	144.59	84.31
Merged-chr7-29818962-3	chr7	29818445	29819445	+	851.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145880, intron 1 of 4)	intron (NM_001145880, intron 1 of 4)	2873.0	NM_001145880	233056.0	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	24.6	32.25	24.05	18.22	18.19	29.74	34.85	35.82	28.1
Merged-chr13-109446306-3	chr13	109445811	109446811	+	851.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	121567.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.86	8.75	6.47	26.31	23.79	30.54	4.22	2.65	11.24
Merged-chr8-60964149-3	chr8	60963670	60964670	+	851.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	intron (NM_007711, intron 1 of 11)	-9371.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	9.72	11.52	12.02	14.17	14.0	6.43	12.67	6.63	1.87
Merged-chr16-57555893-3	chr16	57555400	57556400	+	851.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	6658.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	104.11	129.48	52.72	132.92	94.7	78.77	118.29	102.58	53.08
Merged-chr12-79612913-3	chr12	79612421	79613421	+	851.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	311812.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	31.46	33.18	28.67	49.25	21.46	24.92	40.14	34.05	19.36
Merged-chr12-76306371-3	chr12	76305859	76306859	+	851.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 21 of 27)	intron (NM_138745, intron 21 of 27)	-18532.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	9.15	1.84	1.85	6.07	5.13	8.04	8.45	5.75	3.75
Merged-chr16-84610908-2	chr16	84610394	84611394	+	851.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68895.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	4.0	5.07	14.8	2.02	1.87	0.0	6.34	7.07	1.25
Merged-chr4-119140311-2	chr4	119139822	119140822	+	851.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31577.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	10.3	8.29	5.55	6.75	8.4	12.86	14.79	22.55	7.49
Merged-chr2-148048627-3	chr2	148048082	148049082	+	851.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.57	1.84	1.85	3.37	0.93	3.22	11.62	1.77	1.25
Merged-chr1-131198508-3	chr1	131198025	131199025	+	851.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 2 of 5)	intron (NM_018750, intron 2 of 5)	1660.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	149.88	152.98	123.94	166.66	130.16	135.04	125.69	171.56	102.42
Merged-chr11-97740410-3	chr11	97739913	97740913	+	851.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054051, intron 1 of 9)	intron (NM_054051, intron 1 of 9)	4291.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	13.73	14.75	15.72	16.87	7.0	20.09	21.12	11.94	6.25
Merged-chr4-85618979-1	chr4	85618479	85619479	+	851.7999880000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	413523.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	1.72	0.92	0.0	2.02	5.6	0.0	3.17	1.77	5.0
Merged-chr8-14988970-3	chr8	14988480	14989480	+	851.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-22045.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	9.15	4.61	0.0	4.72	3.27	4.02	8.45	3.1	0.62
Merged-chr12-80065256-3	chr12	80064756	80065756	+	851.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47757.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.43	5.99	8.32	9.45	1.87	8.04	14.79	11.05	3.75
Merged-chr17-48264839-2	chr17	48264339	48265339	+	851.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172623, exon 2 of 6)	exon (NM_172623, exon 2 of 6)	544.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	94.96	120.26	98.97	108.63	106.83	159.95	157.37	148.13	90.56
Merged-chr11-62646790-2	chr11	62646281	62647281	+	851.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	1268.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	24.6	35.48	24.05	26.31	14.46	32.15	32.74	22.99	39.97
Merged-chr12-100684750-2	chr12	100684227	100685227	+	851.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 1 of 17)	L1MB2|LINE|L1	40393.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	51.48	75.57	27.75	72.87	96.57	46.62	68.65	55.27	26.85
Merged-chr5-125141282-3	chr5	125140776	125141776	+	851.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	37938.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	58.35	52.07	24.97	36.43	41.99	32.15	40.14	22.99	34.97
Merged-chr16-55951762-3	chr16	55951296	55952296	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14479.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	37.18	56.22	30.52	47.9	54.58	31.35	44.36	66.77	33.1
Merged-chr2-167497474-3	chr2	167496945	167497945	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030743, intron 1 of 7)	B3|SINE|B2	-4571.0	NM_001356523	263876.0	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	126.42	109.21	65.67	125.5	97.5	67.52	108.79	115.85	42.47
Merged-chr6-47188436-3	chr6	47187940	47188940	+	851.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-55956.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	3.43	1.84	1.85	4.05	0.93	1.61	0.0	1.33	7.49
Merged-chr7-90265790-2	chr7	90265289	90266289	+	851.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183293)	promoter-TSS (NM_183293)	-357.0	NR_111924	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	5.72	2.3	0.0	4.05	1.4	1.61	2.11	2.65	1.87
Merged-chr18-4031127-2	chr18	4030576	4031576	+	851.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-134756.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	10.3	8.75	18.5	9.45	6.06	5.63	8.45	2.65	12.49
Merged-chr12-111889420-3	chr12	111888917	111889917	+	851.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	MIRb|SINE|MIR	18638.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	12.01	19.81	9.25	15.52	13.06	12.86	30.63	19.01	11.87
Merged-chr8-105983626-3	chr8	105983137	105984137	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_027960	71854.0	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	0.0	4.61	1.85	6.07	4.2	5.63	3.17	1.33	5.0
Merged-chr3-86947627-3	chr3	86947121	86948121	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-26737.0	NM_001195498	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	49.2	49.76	24.97	74.22	94.23	92.44	13.73	9.29	7.49
Merged-chr4-126533633-3	chr4	126533177	126534177	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153177)	promoter-TSS (NM_153177)	-219.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	28.6	21.66	37.0	30.36	25.19	39.39	44.36	27.86	17.49
Merged-chr6-91715227-3	chr6	91714715	91715715	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	31148.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	73.79	101.83	110.07	108.63	91.9	128.61	114.07	135.75	79.32
Merged-chr14-19705869-3	chr14	19705382	19706382	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45375.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	6.29	2.3	1.85	1.35	3.27	1.61	1.06	0.0	2.5
Merged-chr10-115816763-3	chr10	115816264	115817264	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146010)	promoter-TSS (NM_146010)	-520.0	NM_001168680	216350.0	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	5.72	1.38	11.1	9.45	3.27	6.43	6.34	3.54	8.74
Merged-chr17-67405798-3	chr17	67405292	67406292	+	851.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51301.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	4.58	5.07	9.25	11.47	5.6	7.23	9.51	2.21	9.37
Merged-chr5-5365617-1	chr5	5365117	5366117	+	851.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	14634.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.0	3.23	0.0	3.37	0.0	6.43	28.52	16.8	0.62
Merged-chr10-3697691-1	chr10	3697191	3698191	+	851.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42686.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	5.72	1.38	0.0	1.35	2.8	0.0	1.06	3.54	5.0
Merged-chr8-13841575-3	chr8	13841097	13842097	+	851.6555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3508.0	NM_153093	231201.0	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	18.31	11.06	17.57	13.49	11.66	7.23	12.67	12.38	6.25
Merged-chr16-17234227-2	chr16	17233727	17234727	+	851.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	640.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	131.57	78.79	59.2	127.52	106.83	72.34	76.05	60.13	22.48
Merged-chr7-123354537-3	chr7	123354025	123355025	+	851.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	15390.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	26.31	14.75	8.32	19.57	23.33	16.88	25.35	19.46	21.23
Merged-chr13-96435894-3	chr13	96435392	96436392	+	851.5610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042714, exon 8 of 14)	exon (NM_001042714, exon 8 of 14)	35268.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	2.86	9.22	9.25	8.77	9.33	8.84	6.34	12.38	3.75
Merged-chr9-110783813-3	chr9	110783297	110784297	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14388.0	NM_153099	235628.0	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	9.72	12.44	3.7	18.89	6.53	8.84	12.67	5.75	2.5
Merged-chr4-101355157-3	chr4	101354654	101355654	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	1094.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	238.55	213.34	109.14	188.92	194.07	112.53	160.54	201.19	95.55
Merged-chr9-54467735-3	chr9	54467244	54468244	+	851.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172771, intron 6 of 43)	L2a|LINE|L2	33882.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	10.87	4.15	1.85	8.1	7.93	4.82	2.11	5.31	0.0
Merged-chr5-74348617-2	chr5	74348061	74349061	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	153235.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	4.58	5.53	15.72	0.0	0.47	0.0	33.8	25.65	22.48
Merged-chr16-35844134-2	chr16	35843653	35844653	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 12 of 16)	intron (NM_001039530, intron 12 of 16)	27229.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	8.58	5.07	3.7	10.8	3.73	12.86	13.73	7.07	11.87
Merged-chr7-132304209-3	chr7	132303715	132304715	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	-11449.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	38.33	41.01	37.0	30.36	29.39	43.4	30.63	24.76	26.85
Merged-chr15-79720959-2	chr15	79720429	79721429	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013818, exon 12 of 12)	3' UTR (NM_013818, exon 12 of 12)	21607.0	NM_194342	223697.0	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	17.73	8.75	30.52	24.29	14.93	18.49	25.35	19.01	16.86
Merged-chr11-95832067-2	chr11	95831550	95832550	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153104)	TTS (NM_153104)	7550.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	40.04	24.88	20.35	24.29	21.93	32.15	33.8	24.32	20.61
Merged-chr4-134759772-2	chr4	134759277	134760277	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	8227.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	25.17	24.88	18.5	35.09	23.33	24.11	23.24	21.67	9.99
Merged-chr2-118790831-1	chr2	118790331	118791331	+	851.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_170593, exon 8 of 8)	exon (NM_170593, exon 8 of 8)	11112.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	1.14	0.92	0.0	3.37	2.33	3.22	2.11	0.44	1.25
Merged-chr17-48558015-3	chr17	48557519	48558519	+	851.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103118.0	NM_152823	76589.0	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	6.86	4.61	12.95	8.77	7.0	15.27	16.9	8.4	14.36
Merged-chr13-49225793-3	chr13	49225287	49226287	+	851.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9761.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	10.3	9.22	1.85	6.75	8.4	5.63	1.06	3.98	8.74
Merged-chr10-67643915-3	chr10	67643404	67644404	+	851.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71945.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	46.34	48.38	37.0	46.56	32.19	38.58	40.14	66.77	38.1
Merged-chr3-146445701-3	chr3	146445183	146446183	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-4784.0	NM_028836	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	62.35	55.29	52.72	83.66	57.38	79.58	77.1	72.07	58.71
Merged-chr16-10844218-3	chr16	10843736	10844736	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9177.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	13.73	3.69	0.0	4.05	3.73	4.02	6.34	3.98	3.75
Merged-chr14-66124477-3	chr14	66123996	66124996	+	851.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271402)	promoter-TSS (NM_001271402)	26.0	NM_001271402	13850.0	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	5.72	1.84	5.55	15.52	9.8	20.9	2.11	4.86	5.0
Merged-chr17-23925347-2	chr17	23924832	23925832	+	851.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7874.0	NM_001077633	620253.0	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	45.76	45.62	49.02	47.9	40.59	49.03	59.15	52.18	60.58
Merged-chr12-100106528-2	chr12	100106044	100107044	+	851.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5787.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	21.74	11.52	7.4	18.22	13.06	6.43	20.07	26.97	13.74
Merged-chr8-120486909-5	chr8	120486345	120487345	+	851.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2021.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	116.13	99.07	73.07	129.55	102.63	70.73	98.23	100.37	59.95
Merged-chr14-74939541-3	chr14	74939052	74940052	+	851.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	8325.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	45.76	62.21	58.27	40.48	35.92	48.23	39.08	33.16	29.98
Merged-chr1-144246634-3	chr1	144246172	144247172	+	851.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015811, intron 3 of 4)	intron (NM_015811, intron 3 of 4)	2432.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	93.24	119.8	23.12	96.48	93.3	54.66	55.98	82.24	48.71
Merged-chr10-12884799-3	chr10	12884288	12885288	+	851.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-23053.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	11.44	8.75	5.55	11.47	7.46	3.22	13.73	10.17	2.5
Merged-chr17-88040966-2	chr17	88040486	88041486	+	851.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	23946.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	27.46	24.42	7.4	21.59	18.66	28.13	24.29	11.5	5.0
Merged-chr5-52138328-1	chr5	52137828	52138828	+	851.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2311.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	2.86	7.37	2.77	3.37	4.67	5.63	2.11	3.1	2.5
Merged-chr1-9772964-3	chr1	9772444	9773444	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24562.0	NM_173443	70675.0	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	5.15	13.82	2.77	10.12	13.53	10.45	19.01	12.38	11.24
Merged-chr14-33813505-3	chr14	33813009	33814009	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2226.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	6.29	3.23	1.85	2.02	3.27	5.63	6.34	2.65	5.0
Merged-chr1-136416449-3	chr1	136415952	136416952	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_024328)	promoter-TSS (NR_024328)	-933.0	NR_024328	320054.0	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	11.44	19.81	8.32	18.22	21.46	20.09	39.08	29.63	15.61
Merged-chr15-42674946-1	chr15	42674446	42675446	+	851.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286062, intron 1 of 8)	LFSINE_Vert|SINE|tRNA	2031.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	1.14	0.92	5.55	4.05	1.4	6.43	1.06	4.86	3.75
Merged-chr16-33130916-3	chr16	33130412	33131412	+	851.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	25551.0	NR_035469	100316698.0		NR_035469	ENSMUSG00000088860	Mir1947	mir-1947|mmu-mir-1947	microRNA 1947	ncRNA	11.44	5.99	1.85	6.07	5.13	3.22	3.17	2.21	5.0
Merged-chr10-99616017-3	chr10	99615513	99616513	+	851.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038019, intron 1 of 2)	intron (NR_038019, intron 1 of 2)	6842.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.15	2.76	0.0	4.05	0.93	1.61	3.17	2.21	2.5
Merged-chr4-132555775-3	chr4	132555272	132556272	+	851.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8295.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	33.18	22.58	18.5	43.18	34.06	20.9	26.4	18.13	15.61
Merged-chr11-21321776-3	chr11	21321286	21322286	+	851.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_139061)	TTS (NM_139061)	22889.0	NR_035454	100316753.0		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	5.72	15.21	2.77	10.12	6.06	5.63	10.56	5.75	11.24
Merged-chr10-17721754-3	chr10	17721290	17722290	+	851.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1438.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	82.95	110.13	75.85	68.15	74.64	122.18	90.83	122.48	135.52
Merged-chr11-118474060-3	chr11	118473567	118474567	+	851.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII|LTR|ERVK	-2765.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	18.31	18.43	10.17	28.34	14.0	43.4	21.12	21.67	30.6
Merged-chr4-133207015-3	chr4	133206486	133207486	+	851.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	5550.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	17.16	11.06	10.17	22.27	8.86	15.27	7.39	11.05	7.49
Merged-chr8-123750451-3	chr8	123749962	123750962	+	851.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16504.0	NR_040702	234863.0	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	6.86	6.45	1.85	6.75	7.0	8.84	4.22	2.21	11.24
Merged-chr1-13454754-2	chr1	13454264	13455264	+	851.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80681.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	2.29	1.84	1.85	7.42	2.8	8.84	3.17	1.77	11.24
Merged-chr11-115173643-2	chr11	115173131	115174131	+	851.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	10290.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	18.31	10.14	7.4	33.74	15.39	6.43	22.18	17.24	11.24
Merged-chr12-46710204-1	chr12	46709704	46710704	+	851.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021361, intron 4 of 4)	L2a|LINE|L2	108571.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	1.72	0.46	6.47	1.35	1.87	1.61	1.06	0.0	3.75
Merged-chr11-103021490-3	chr11	103021007	103022007	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4360.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	29.17	21.66	12.95	99.18	62.98	62.7	98.23	70.75	21.86
Merged-chr8-110619366-3	chr8	110618870	110619870	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	intron (NR_151675, intron 1 of 17)	803.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	132.14	184.31	115.62	158.56	209.46	162.37	251.37	294.48	83.06
Merged-chr17-74341228-1	chr17	74340728	74341728	+	851.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357738, intron 1 of 15)	intron (NM_001357738, intron 1 of 15)	2241.0	NM_016962	50850.0	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	22.31	12.44	14.8	41.83	26.12	22.51	127.8	134.86	48.09
Merged-chr13-113609527-3	chr13	113608970	113609970	+	851.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	L2a|LINE|L2	9094.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	20.02	17.05	12.95	16.19	6.06	20.9	12.67	12.82	8.74
Merged-chr2-146517082-2	chr2	146516568	146517568	+	851.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5064.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	4.58	5.53	3.7	3.37	6.06	8.84	6.34	5.75	7.49
Merged-chr2-79618331-2	chr2	79617825	79618825	+	851.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17100.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	24.6	28.57	23.12	45.21	24.72	29.74	10.56	7.96	10.62
Merged-chr5-115003475-2	chr5	115002988	115003988	+	851.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8036.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	5.72	4.15	0.92	15.52	1.87	4.82	5.28	5.31	2.5
Merged-chr9-120935252-4	chr9	120934766	120935766	+	851.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	1688.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	131.57	152.06	91.57	118.08	143.68	96.45	120.41	111.43	53.08
Merged-chr10-13323374-2	chr10	13322884	13323884	+	851.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	905.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	35.47	43.77	19.42	29.01	37.32	49.83	31.69	35.37	29.35
Merged-chr2-165445122-2	chr2	165444632	165445632	+	851.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054055, intron 3 of 12)	intron (NM_054055, intron 3 of 12)	28065.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	1.72	3.23	3.7	6.07	4.67	1.61	5.28	3.1	5.0
Merged-chr8-83131745-4	chr8	83131176	83132176	+	851.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33676.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	36.61	41.47	41.62	47.23	49.45	52.25	39.08	31.39	43.09
Merged-chr7-100932872-3	chr7	100932369	100933369	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081116)	promoter-TSS (NM_001081116)	-708.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	2.86	2.3	6.47	9.45	3.73	5.63	4.22	2.65	2.5
Merged-chr2-167685371-3	chr2	167684870	167685870	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3545.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	7.44	7.83	0.92	10.8	5.6	6.43	8.45	3.1	3.75
Merged-chr3-130079944-3	chr3	130079449	130080449	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19042.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	5.72	4.61	2.77	2.7	0.47	1.61	4.22	0.88	1.25
Merged-chr11-54808346-3	chr11	54807832	54808832	+	851.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11587.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	85.81	34.56	29.6	73.54	32.66	30.54	81.33	37.14	49.96
Merged-chr2-156253046-2	chr2	156252553	156253553	+	851.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 3 of 17)	intron (NM_172674, intron 3 of 17)	56406.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	37.76	19.81	24.97	4.05	0.93	4.82	46.47	53.06	18.11
Merged-chr1-36089659-2	chr1	36089174	36090174	+	851.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	21274.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	61.78	31.79	34.22	76.92	48.98	68.32	38.02	40.68	34.97
Merged-chr1-64226244-3	chr1	64225718	64226718	+	851.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104829.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	4.0	5.07	1.85	10.8	2.33	4.02	3.17	5.75	3.75
Merged-chr2-94265692-3	chr2	94265183	94266183	+	851.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4284.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	10.3	7.83	7.4	14.84	13.53	23.31	25.35	19.9	18.74
Merged-chr6-29474691-3	chr6	29474172	29475172	+	851.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3235.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	67.5	63.59	72.15	87.71	97.03	118.96	108.79	100.37	71.82
Merged-chr14-75069665-5	chr14	75069155	75070155	+	851.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	53628.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	42.9	39.17	33.3	39.81	31.72	52.25	53.87	45.99	33.1
Merged-chrX-73007694-1	chrX	73007194	73008194	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109043, intron 12 of 18)	intron (NM_001109043, intron 12 of 18)	15615.0	NR_035517	100316779.0		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	94.96	109.67	41.62	76.92	92.84	69.93	79.21	119.39	46.84
Merged-chr9-41950895-1	chr9	41950395	41951395	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126318.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	9.15	2.3	7.4	20.92	20.06	4.82	6.34	3.98	2.5
Merged-chr8-122111142-1	chr8	122110642	122111642	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133118.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	1.72	2.3	0.92	4.72	2.8	4.02	3.17	1.33	2.5
Merged-chr1-138840175-1	chr1	138839675	138840675	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025565, intron 1 of 4)	intron (NM_001025565, intron 1 of 4)	2269.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.57	0.0	1.85	5.4	3.73	4.02	1.06	0.88	0.62
Merged-chr6-114869665-1	chr6	114869165	114870165	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	52156.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	9.15	8.75	7.4	19.57	11.2	8.84	10.56	8.4	3.75
Merged-chr4-133109414-3	chr4	133108913	133109913	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-21220.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	54.92	46.08	58.27	50.6	36.39	55.46	6.34	1.77	5.0
Merged-chr2-121885673-3	chr2	121885159	121886159	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205371, intron 1 of 9)	(A)n|Simple_repeat|Simple_repeat	17954.0	NM_001205371	319996.0	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	2.86	4.15	2.77	4.72	3.73	6.43	2.11	6.19	8.74
Merged-chr7-55847821-2	chr7	55847317	55848317	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	5746.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	31.46	41.01	18.5	27.66	20.06	40.19	35.91	39.35	43.09
Merged-chr8-111636485-1	chr8	111635985	111636985	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-6163.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	8.58	2.76	0.0	4.05	8.86	7.23	2.11	3.54	5.0
Merged-chr5-142908213-3	chr5	142907771	142908771	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1517.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	48.05	74.65	133.19	49.93	34.06	68.32	102.45	88.88	123.03
Merged-chr14-73401325-3	chr14	73400817	73401817	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16028.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	51.48	62.21	56.42	49.25	51.32	89.22	46.47	49.96	31.23
Merged-chr4-12500759-2	chr4	12500244	12501244	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-328729.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	32.61	31.33	32.37	47.9	50.85	53.05	68.65	61.9	43.72
Merged-chr1-131020312-1	chr1	131019812	131020812	+	851.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 1 of 4)	intron (NM_010548, intron 1 of 4)	467.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	73.79	82.94	77.7	78.94	43.39	37.78	154.2	154.32	55.58
Merged-chr6-48539554-2	chr6	48539062	48540062	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347164, intron 2 of 2)	intron (NM_001347164, intron 2 of 2)	1993.0	NM_133764	76252.0	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	6.29	2.76	0.0	2.7	3.27	4.82	1.06	2.65	4.37
Merged-chr13-10220673-2	chr13	10220164	10221164	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	140139.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	2.29	3.69	1.85	3.37	2.33	1.61	3.17	1.33	7.49
Merged-chr13-73445696-2	chr13	73445206	73446206	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-21677.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.15	5.53	12.95	2.7	4.2	4.82	4.22	6.63	0.0
Merged-chr15-38342950-1	chr15	38342450	38343450	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42239.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.0	3.69	1.85	11.47	3.27	4.82	3.17	2.21	5.0
Merged-chr7-6359369-1	chr7	6358869	6359869	+	851.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3939.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	2.29	5.53	1.85	0.0	0.47	0.8	2.11	3.1	2.5
Merged-chr15-30622349-1	chr15	30621849	30622849	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 5 of 21)	intron (NM_001355502, intron 5 of 21)	-416777.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	5.15	4.61	9.25	3.37	14.93	4.82	7.39	4.42	16.86
Merged-chr3-95739561-3	chr3	95739074	95740074	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252653)	promoter-TSS (NM_001252653)	-5.0	NM_001252653	13601.0	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	22.88	26.26	27.75	62.75	58.31	73.95	32.74	37.58	31.23
Merged-chr12-80279640-3	chr12	80279143	80280143	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-19262.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	6.29	5.53	0.0	8.1	4.2	0.0	7.39	3.1	1.25
Merged-chr3-152557740-1	chr3	152557240	152558240	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-109173.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	4.0	2.3	5.55	3.37	3.73	3.22	2.11	0.44	5.0
Merged-chr8-23035441-3	chr8	23034950	23035950	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	351.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	20.59	28.11	12.95	28.34	32.19	27.33	29.57	34.05	39.97
Merged-chr16-49045864-1	chr16	49045364	49046364	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11622.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	9.15	5.53	0.0	12.82	3.27	3.22	6.34	2.65	4.37
Merged-chr12-86884207-3	chr12	86883709	86884709	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145836, exon 1 of 1)	5' UTR (NM_145836, exon 1 of 1)	605.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	233.97	191.23	163.72	194.99	192.67	200.14	239.75	259.99	166.12
Merged-chr11-80429199-2	chr11	80428688	80429688	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178616, intron 1 of 13)	CpG	573.0	NM_178616	69077.0	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	239.12	224.4	202.56	205.11	265.91	213.81	171.1	151.66	138.02
Merged-chr10-15189439-2	chr10	15188945	15189945	+	851.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	429156.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	12.59	9.68	5.55	15.52	17.26	12.06	4.22	2.65	2.5
Merged-chr17-86677089-1	chr17	86676589	86677589	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76775.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	4.0	5.99	1.85	49.25	39.19	27.33	9.51	6.19	1.25
Merged-chr10-14045254-1	chr10	14044754	14045754	+	851.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	78875.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.29	5.07	0.92	4.05	1.4	0.8	12.67	15.48	14.99
Merged-chrX-167319002-3	chrX	167318532	167319532	+	850.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MLT1J-int|LTR|ERVL-MaLR	11539.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	49.2	51.61	52.72	71.52	54.11	49.83	46.47	50.85	36.22
Merged-chr3-19310228-3	chr3	19309751	19310751	+	850.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	1071.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	40.62	25.8	22.2	22.94	27.06	36.97	32.74	34.49	15.61
Merged-chr11-68483396-3	chr11	68482913	68483913	+	850.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 5 of 18)	intron (NM_177320, intron 5 of 18)	-19606.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	29.75	7.37	10.17	20.92	8.4	7.23	6.34	1.33	7.49
Merged-chr7-126797911-3	chr7	126797347	126798347	+	850.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177308, intron 1 of 8)	intron (NM_001177308, intron 1 of 8)	1331.0	NM_001177307	11674.0	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	44.62	58.52	49.95	53.98	40.59	44.21	50.7	36.7	51.21
Merged-chr1-152913834-3	chr1	152913337	152914337	+	850.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11191.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	28.6	28.11	20.35	17.54	7.93	26.53	45.42	33.16	26.85
Merged-chr18-75820212-3	chr18	75819704	75820704	+	850.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145356)	promoter-TSS (NM_145356)	26.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.72	3.23	0.0	8.1	1.87	1.61	9.51	2.21	1.25
Merged-chr17-31139682-2	chr17	31139183	31140183	+	850.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	4599.0	NM_009363	21785.0	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	2.86	2.76	5.55	7.42	2.33	11.25	7.39	6.63	6.87
Merged-chr17-74123189-2	chr17	74122698	74123698	+	850.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75282.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	3.43	4.15	5.55	5.4	3.73	7.23	5.28	3.1	8.74
Merged-chr14-30695802-3	chr14	30695300	30696300	+	850.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19049.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	37.76	24.42	23.12	47.23	27.06	12.06	17.96	15.03	14.99
Merged-chr14-79397959-3	chr14	79397459	79398459	+	850.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145960, exon 1 of 11)	5' UTR (NM_145960, exon 1 of 11)	187.0	NM_145960	211253.0	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	44.05	56.22	49.95	48.58	57.38	61.89	77.1	72.52	44.97
Merged-chr19-5842492-3	chr19	5842011	5843011	+	850.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003513, exon 1 of 1)	non-coding (NR_003513, exon 1 of 1)	2967.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	167.04	132.71	63.82	167.33	108.7	86.81	130.97	122.04	78.07
Merged-chr6-22391121-3	chr6	22390525	22391525	+	850.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34944.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	17.16	19.81	37.0	31.04	29.86	33.76	30.63	27.86	26.23
Merged-chr11-32537326-2	chr11	32536827	32537827	+	850.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	4061.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	71.51	54.37	63.82	102.56	74.17	106.1	125.69	69.86	63.7
Merged-chr8-122938781-2	chr8	122938285	122939285	+	850.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	90411.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	44.62	23.5	27.75	54.65	25.66	16.88	15.84	11.94	18.74
Merged-chr18-12936955-2	chr18	12936467	12937467	+	850.7000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	RMER6B|LTR|ERVK	4874.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	20.59	13.36	18.5	22.94	14.93	16.08	29.57	15.48	12.49
Merged-chr13-104095001-1	chr13	104094501	104095501	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029447, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	14613.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	3.43	3.23	3.7	6.07	2.8	4.82	5.28	2.65	0.62
Merged-chr17-48270907-3	chr17	48270404	48271404	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 4 of 5)	intron (NM_001033922, intron 4 of 5)	6609.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	38.33	29.49	48.1	34.41	20.06	54.66	39.08	29.63	35.6
Merged-chr5-105409273-3	chr5	105408765	105409765	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6510.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	7.44	6.91	9.25	9.45	13.53	9.65	6.34	4.86	9.99
Merged-chr2-18992791-1	chr2	18992291	18993291	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	RLTR12G|LTR|ERVK	5330.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	13.73	20.74	14.8	7.42	6.06	5.63	4.22	6.19	5.0
Merged-chr2-178078431-1	chr2	178077931	178078931	+	850.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162922)	promoter-TSS (NM_001162922)	-6.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	8.01	2.76	12.02	10.12	7.0	4.02	15.84	7.07	9.99
Merged-chr11-52043415-3	chr11	52042917	52043917	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	39196.0	NM_001166653	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	9.15	11.06	14.8	10.8	5.6	6.43	14.79	15.03	6.87
Merged-chr2-24970577-1	chr2	24970077	24971077	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355561, intron 7 of 7)	intron (NM_001355561, intron 7 of 7)	4521.0	NM_001031808	107733.0	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	14.3	10.6	9.25	8.77	5.13	15.27	8.45	3.98	5.0
Merged-chr11-114226775-3	chr11	114226276	114227276	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28518.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.57	1.38	2.77	30.36	8.86	0.8	30.63	22.55	2.5
Merged-chr4-48100407-3	chr4	48099912	48100912	+	850.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24507.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	2.29	3.69	3.7	2.02	3.27	3.22	9.51	0.88	5.0
Merged-chr17-8232304-2	chr17	8231804	8232804	+	850.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3739.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	1.72	4.61	8.32	2.7	3.73	1.61	4.22	1.77	1.25
Merged-chr4-6227244-3	chr4	6226741	6227741	+	850.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	36136.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	8.01	8.75	12.02	7.42	3.73	8.04	32.74	34.05	21.23
Merged-chr10-60282259-3	chr10	60281792	60282792	+	850.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	-2169.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	244.27	237.76	192.39	261.79	249.12	237.12	272.5	419.17	160.5
Merged-chr11-75168185-3	chr11	75167648	75168648	+	850.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098203)	promoter-TSS (NM_001098203)	4.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	90.38	81.1	135.04	89.74	74.17	136.64	137.3	80.92	71.2
Merged-chr7-135522237-1	chr7	135521737	135522737	+	850.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	6417.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	5.72	4.15	1.85	5.4	5.13	10.45	3.17	2.21	1.25
Merged-chr6-39527936-3	chr6	39527409	39528409	+	850.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	29925.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	110.98	93.54	56.42	122.12	118.49	113.33	177.44	194.55	68.07
Merged-chr3-82800615-2	chr3	82800114	82801114	+	850.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75869.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	2.86	8.29	6.47	16.87	12.13	9.65	8.45	1.33	2.5
Merged-chr12-70695246-2	chr12	70694743	70695743	+	850.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-130271.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.0	7.83	0.0	8.1	8.4	6.43	11.62	4.86	2.5
Merged-chr10-120980369-2	chr10	120979878	120980878	+	850.5833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	41.76	27.65	7.4	65.45	45.72	36.17	23.24	20.34	17.49
Merged-chr9-123808751-3	chr9	123808239	123809239	+	850.5610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030712, intron 1 of 1)	intron (NM_030712, intron 1 of 1)	2262.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	39.47	66.81	67.52	66.12	72.78	69.93	68.65	81.8	37.47
Merged-chr11-74547346-5	chr11	74546847	74547847	+	850.5599980000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42811.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	25.74	14.75	22.2	28.34	15.86	26.53	52.81	27.41	11.24
Merged-chr2-153174498-3	chr2	153174020	153175020	+	850.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	L1ME1|LINE|L1	13219.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	14.3	10.6	7.4	21.59	9.8	9.65	15.84	7.07	12.49
Merged-chr12-79319502-3	chr12	79318988	79319988	+	850.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 5 of 10)	L1MEc|LINE|L1	22137.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	53.77	42.39	18.5	80.29	50.85	21.7	79.21	63.67	22.48
Merged-chr12-40447271-2	chr12	40446777	40447777	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1224.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	72.65	60.82	56.42	65.45	49.92	59.48	58.09	49.96	35.6
Merged-chr10-126330719-1	chr10	126330219	126331219	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	364500.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.57	2.3	3.7	0.0	0.47	4.02	0.0	2.21	1.25
Merged-chr10-59969925-3	chr10	59969423	59970423	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18153.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	58.92	65.43	61.05	68.82	89.1	91.63	69.71	75.17	62.45
Merged-chr3-105705324-1	chr3	105704824	105705824	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163356)	promoter-TSS (NM_001163356)	-134.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	10.87	1.84	0.0	6.07	4.2	6.43	6.34	1.77	3.12
Merged-chr2-102827946-2	chr2	102827461	102828461	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 11 of 13)	MTC|LTR|ERVL-MaLR	73704.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.58	3.23	11.1	10.12	12.6	24.11	7.39	4.86	24.36
Merged-chr18-38339527-1	chr18	38339027	38340027	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011937)	promoter-TSS (NM_011937)	-534.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	70.36	77.87	58.27	109.98	129.69	118.96	101.39	94.18	46.84
Merged-chr6-108723461-1	chr6	108722961	108723961	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59598.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.72	2.3	4.62	4.05	3.27	3.22	3.17	2.21	4.37
Merged-chrX-159974715-1	chrX	159974215	159975215	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_110969, exon 17 of 17)	non-coding (NR_110969, exon 17 of 17)	-13718.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	9.15	4.61	6.47	9.45	5.6	10.45	5.28	6.19	8.74
Merged-chr2-59245045-1	chr2	59244545	59245545	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	84195.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	26.89	33.64	23.12	33.06	27.99	27.33	33.8	24.32	14.36
Merged-chr7-91740954-2	chr7	91740461	91741461	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 3 of 22)	MTD|LTR|ERVL-MaLR	-321433.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	9.15	5.53	18.5	8.1	7.0	9.65	7.39	3.1	6.25
Merged-chr10-61696135-2	chr10	61695729	61696729	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272090, exon 1 of 4)	exon (NM_001272090, exon 1 of 4)	643.0	NR_073587	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	38.9	29.03	21.27	43.18	32.66	29.74	41.19	26.53	36.85
Merged-chr15-98708157-3	chr15	98707657	98708657	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153518)	promoter-TSS (NM_153518)	-70.0	NM_153518	105833.0	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	11.44	2.76	7.4	10.12	2.33	0.0	3.17	1.77	3.75
Merged-chr4-72319340-2	chr4	72318840	72319840	+	850.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	118096.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	10.3	11.52	20.35	5.4	9.33	20.9	5.28	3.1	9.99
Merged-chr1-136579524-2	chr1	136579014	136580014	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45387.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	20.02	19.81	14.8	16.87	15.39	8.84	34.85	24.32	13.74
Merged-chr17-88107794-1	chr17	88107294	88108294	+	850.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-17718.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	4.0	3.23	1.85	4.05	1.4	3.22	11.62	1.77	3.75
Merged-chr18-32441420-1	chr18	32440920	32441920	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63136.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	6.86	0.92	0.0	5.4	1.87	1.61	2.11	3.98	0.0
Merged-chr15-77236201-1	chr15	77235701	77236701	+	850.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	9407.0	NM_001358772	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	5.15	3.23	0.0	6.75	7.0	11.25	5.28	6.63	4.37
Merged-chr10-75710408-3	chr10	75709924	75710924	+	850.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 26 of 36)	intron (NM_172549, intron 26 of 36)	53933.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	6.86	3.69	10.17	6.07	7.0	9.65	4.22	5.31	8.12
Merged-chr6-52488018-3	chr6	52487520	52488520	+	850.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4431.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	24.6	17.51	11.1	24.29	26.59	27.33	17.96	35.37	15.61
Merged-chr9-88719432-4	chr9	88719014	88720014	+	850.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359992)	promoter-TSS (NM_001359992)	73.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	69.79	83.86	12.95	56.68	78.37	16.08	73.93	81.8	10.62
Merged-chr6-32610871-2	chr6	32610362	32611362	+	850.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22670.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	1.72	6.91	3.7	8.1	11.2	8.84	11.62	8.4	5.0
Merged-chr11-103980239-2	chr11	103979770	103980770	+	850.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007477, intron 3 of 4)	intron (NM_007477, intron 3 of 4)	13399.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	152.17	182.01	150.77	221.31	206.66	254.8	188.0	268.84	156.13
Merged-chr13-110585225-1	chr13	110584725	110585725	+	850.400024	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	190181.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	20.02	34.1	11.1	2.02	3.27	0.0	5.28	2.21	3.75
Merged-chr16-35490829-3	chr16	35490327	35491327	+	850.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028295)	promoter-TSS (NM_028295)	46.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	12.59	1.38	3.7	6.07	3.27	11.25	4.22	1.33	4.37
Merged-chr8-122405262-3	chr8	122404755	122405755	+	850.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029993, intron 9 of 18)	intron (NM_001029993, intron 9 of 18)	-16765.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	20.02	12.44	11.1	9.45	10.73	3.22	14.79	10.17	8.12
Merged-chr5-118477852-3	chr5	118477352	118478352	+	850.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82867.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	34.9	27.65	5.55	48.58	22.86	10.45	32.74	23.88	7.49
Merged-chr1-39585614-2	chr1	39585086	39586086	+	850.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-8239.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	53.2	54.37	20.35	35.09	39.65	40.99	26.4	32.28	36.85
Merged-chr1-43467131-2	chr1	43466624	43467624	+	850.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	21373.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	3.43	7.37	1.85	26.31	18.66	17.68	15.84	15.48	6.87
Merged-chr11-89021597-2	chr11	89021090	89022090	+	850.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22187.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	179.62	168.19	103.59	242.22	177.27	167.99	172.16	174.66	99.92
Merged-chr1-122357216-2	chr1	122356716	122357716	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	152071.0	NR_151524	102638832.0	Mm.112794	NR_151524	ENSMUSG00000099960	Gm28590	-	predicted gene 28590	ncRNA	4.58	2.3	1.85	0.67	1.87	0.8	2.11	0.88	1.25
Merged-chr2-128422830-3	chr2	128422348	128423348	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	B3A|SINE|B2	6503.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	22.88	20.74	18.5	24.29	11.2	16.88	16.9	12.38	11.24
Merged-chr3-109439500-1	chr3	109439000	109440000	+	850.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	98817.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.86	11.98	23.12	14.84	18.19	21.7	11.62	7.07	5.62
Merged-chr8-37011871-3	chr8	37011376	37012376	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126063, intron 1 of 2)	intron (NR_126063, intron 1 of 2)	12362.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	17.16	26.26	16.65	29.69	15.86	19.29	20.07	16.8	19.98
Merged-chr10-94638797-3	chr10	94638300	94639300	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49813.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	9.15	4.61	1.85	12.82	11.66	4.82	6.34	8.4	1.25
Merged-chr3-101377057-1	chr3	101376557	101377557	+	850.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207205)	promoter-TSS (NM_207205)	-68.0	NM_207205	78908.0	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	4.58	0.0	0.0	3.37	0.47	1.61	5.28	0.0	1.87
Merged-chr18-20787228-3	chr18	20786730	20787730	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40826.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	14.3	18.89	9.25	37.11	20.53	58.68	31.69	18.13	24.36
Merged-chr2-51001104-1	chr2	51000604	51001604	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	91420.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	3.43	3.69	1.85	2.7	1.87	0.8	1.06	2.21	2.5
Merged-chr7-127717184-3	chr7	127716679	127717679	+	850.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001301283, exon 3 of 3)	exon (NM_001301283, exon 3 of 3)	4242.0	NM_001301283	13019.0	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	2.29	2.3	9.25	3.37	2.8	1.61	2.11	0.88	2.5
Merged-chr15-79400352-3	chr15	79399857	79400857	+	850.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	2562.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	12.59	10.6	18.5	33.06	15.86	21.7	19.01	24.76	8.12
Merged-chr7-139208220-3	chr7	139207708	139208708	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162540, intron 1 of 11)	intron (NM_001162540, intron 1 of 11)	-4780.0	NM_027164	76612.0	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	3.43	7.37	1.85	8.1	2.33	2.41	5.28	3.98	5.0
Merged-chr1-162665735-3	chr1	162665251	162666251	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7532.0	NM_001177581	100038657.0	Mm.416999	NM_001177581	ENSMUSG00000091060	Myocos	7420461P10Rik	myocilin opposite strand	protein-coding	9.15	7.83	9.25	20.24	8.4	19.29	14.79	11.94	12.49
Merged-chr10-79670456-3	chr10	79669937	79670937	+	850.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148934, intron 1 of 1)	intron (NM_148934, intron 1 of 1)	1027.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	10.87	12.9	25.9	17.54	10.73	16.88	16.9	21.67	26.85
Merged-chr4-62407979-3	chr4	62407450	62408450	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027297)	promoter-TSS (NM_027297)	673.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	96.68	167.73	89.72	89.74	142.75	79.58	283.06	304.21	133.65
Merged-chr8-120437466-3	chr8	120436953	120437953	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51413.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	44.62	53.91	37.0	37.11	32.19	26.53	66.54	54.39	25.61
Merged-chr7-118118583-3	chr7	118118098	118119098	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019419)	TTS (NM_019419)	-2451.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	80.66	79.25	75.85	89.06	73.24	87.61	121.46	143.26	87.43
Merged-chr10-20349106-3	chr10	20348612	20349612	+	850.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1293.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	33.18	23.96	13.87	33.06	22.86	26.53	67.6	75.61	39.35
Merged-chr3-108609096-3	chr3	108608592	108609592	+	850.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358055, intron 1 of 14)	Lx7|LINE|L1	17359.0	NM_001358055	99512.0	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	20.59	17.97	11.1	22.27	8.86	9.65	16.9	14.15	3.75
Merged-chr18-61229836-2	chr18	61229335	61230335	+	850.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	9336.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	10.87	13.82	9.25	4.72	5.6	11.25	35.91	12.38	5.0
Merged-chr2-112490338-1	chr2	112489838	112490838	+	850.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2626.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	8.01	2.76	3.7	6.75	4.67	0.0	1.06	3.1	9.37
Merged-chr9-77733949-3	chr9	77733446	77734446	+	850.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-20589.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	25.17	18.89	10.17	27.66	24.72	27.33	13.73	15.48	3.75
Merged-chr5-3387371-3	chr5	3386865	3387865	+	850.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	43472.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	14.87	13.36	5.55	47.9	51.78	24.92	29.57	12.82	5.0
Merged-chr2-38950572-3	chr2	38950072	38951072	+	850.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172854, intron 4 of 7)	intron (NM_172854, intron 4 of 7)	18592.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	5.72	1.84	3.7	10.8	7.0	4.02	9.51	5.31	3.75
Merged-chr1-23555980-3	chr1	23555476	23556476	+	850.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18611.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	4.0	2.3	0.92	5.4	2.8	6.43	2.11	1.77	0.0
Merged-chr15-77610410-1	chr15	77609910	77610910	+	850.2000119999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A|LTR|ERVK	-14285.0	NM_177820	328561.0	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	5.72	4.61	3.7	6.07	0.47	0.0	17.96	28.74	28.73
Merged-chr6-116472770-3	chr6	116472284	116473284	+	850.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11606.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	2.86	4.15	3.7	8.77	8.4	4.82	5.28	7.52	5.62
Merged-chr2-117314012-3	chr2	117313507	117314507	+	850.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 2 of 16)	intron (NM_011246, intron 2 of 16)	28870.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	21.17	21.66	20.35	13.49	9.33	20.09	22.18	10.17	23.73
Merged-chr4-115835755-3	chr4	115835261	115836261	+	850.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175308, exon 4 of 4)	3' UTR (NM_175308, exon 4 of 4)	-3437.0	NM_001285488	17346.0	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	19.45	26.26	50.87	16.19	15.86	33.76	25.35	23.88	24.98
Merged-chr17-47368879-3	chr17	47368386	47369386	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146212)	promoter-TSS (NM_001146212)	-1.0	NM_001146212	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	78.94	83.86	36.07	77.59	74.17	86.81	113.01	98.6	33.72
Merged-chr3-116053514-3	chr3	116053029	116054029	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45232.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	16.59	7.37	5.55	11.47	9.8	18.49	11.62	7.07	7.49
Merged-chr7-104300086-1	chr7	104299586	104300586	+	850.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023835, exon 8 of 8)	3' UTR (NM_023835, exon 8 of 8)	-11980.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	12.67	8.4	12.49
Merged-chr9-122138864-3	chr9	122138353	122139353	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357775, intron 4 of 7)	L1M5|LINE|L1	21394.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	9.72	6.91	12.02	4.72	7.46	14.47	7.39	6.19	11.24
Merged-chr9-90261534-2	chr9	90261046	90262046	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	9223.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	25.74	48.84	36.07	22.94	21.46	32.96	65.48	37.14	34.97
Merged-chr5-146947725-1	chr5	146947225	146948225	+	850.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025652)	promoter-TSS (NM_025652)	-932.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	2.86	0.46	3.7	3.37	4.2	5.63	48.58	47.75	39.97
Merged-chr8-19161732-3	chr8	19161241	19162241	+	850.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3854.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	33.18	43.31	20.35	25.64	40.59	35.37	81.33	82.69	30.6
Merged-chr14-86678516-2	chr14	86678019	86679019	+	850.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	432549.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	11.44	2.3	3.7	8.77	6.53	5.63	2.11	0.44	4.37
Merged-chr6-86497447-4	chr6	86496931	86497931	+	850.1597289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9204.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	142.44	104.6	82.32	61.4	31.72	31.35	55.98	24.76	26.23
Merged-chr13-23577114-3	chr13	23576580	23577580	+	850.158325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178204)	TTS (NM_178204)	1317.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	30.32	25.8	24.97	23.62	18.66	22.51	27.46	27.41	39.35
Merged-chr8-46765071-6	chr8	46764620	46765620	+	850.1527710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	25375.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	157.89	158.51	113.77	126.17	91.9	113.33	133.08	130.44	84.94
Merged-chr13-100195637-2	chr13	100195141	100196141	+	850.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126182, intron 2 of 15)	intron (NM_001126182, intron 2 of 15)	6481.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	44.62	31.79	39.77	43.86	20.06	48.23	54.92	43.33	36.22
Merged-chr10-6694682-3	chr10	6694182	6695182	+	850.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63911.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	15.45	2.3	1.85	5.4	0.93	3.22	5.28	5.31	2.5
Merged-chr7-114291648-3	chr7	114291179	114292179	+	850.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15563.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	56.63	105.06	64.75	57.35	67.64	102.08	83.44	83.57	71.82
Merged-chr8-90933167-3	chr8	90932662	90933662	+	850.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 1 of 38)	exon (NM_001310530, exon 1 of 38)	913.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	10.3	15.21	22.2	26.99	18.19	14.47	15.84	15.48	11.87
Merged-chr11-75053185-3	chr11	75052678	75053678	+	850.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 12 of 18)	intron (NM_001002764, intron 12 of 18)	12813.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	138.44	131.32	92.5	124.15	106.83	150.31	123.57	102.14	64.95
Merged-chr6-85346392-3	chr6	85345902	85346902	+	850.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 3 of 5)	intron (NM_001003955, intron 3 of 5)	-10029.0	NR_030486	735267.0		NR_030486	ENSMUSG00000076012	Mir705	Mirn705|mmu-mir-705	microRNA 705	ncRNA	3.43	3.69	1.85	3.37	1.87	5.63	0.0	2.65	1.25
Merged-chr2-78580236-3	chr2	78579733	78580733	+	850.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288814.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	2.29	1.84	1.85	1.35	6.53	1.61	2.11	2.65	3.12
Merged-chr7-97029347-3	chr7	97028834	97029834	+	850.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 7 of 13)	intron (NM_153591, intron 7 of 13)	-52417.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	68.07	68.66	55.5	74.89	93.3	84.4	74.99	87.99	51.84
Merged-chr15-27671795-3	chr15	27671315	27672315	+	850.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	9727.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	61.21	69.58	91.57	74.22	74.64	91.63	86.61	73.4	44.97
Merged-chr4-109360896-1	chr4	109360396	109361396	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 13 of 24)	intron (NM_007943, intron 13 of 24)	17840.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	5.72	5.53	7.4	6.07	12.13	8.04	7.39	6.19	12.49
Merged-chr1-183917145-2	chr1	183916644	183917644	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116854.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	10.3	11.06	12.02	14.17	12.6	10.45	25.35	19.01	17.49
Merged-chr9-20897431-1	chr9	20896931	20897931	+	850.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016876, intron 5 of 10)	B4A|SINE|B4	1159.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	20.02	22.12	8.32	27.66	9.8	17.68	38.02	33.16	21.23
Merged-chr14-30597395-1	chr14	30596895	30597895	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	12915.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	17.16	16.59	14.8	25.64	7.93	24.92	30.63	23.43	23.73
Merged-chr9-49050235-1	chr9	49049735	49050735	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-5346.0	NM_012039	26951.0	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	22.31	29.03	11.1	47.23	38.72	44.21	5.28	4.42	3.75
Merged-chr8-116275748-2	chr8	116275240	116276240	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-229275.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	7.44	5.07	5.55	8.77	6.53	7.23	6.34	1.77	6.25
Merged-chr5-105649916-2	chr5	105649423	105650423	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50046.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	20.59	9.22	12.95	25.64	17.26	36.17	33.8	22.55	16.24
Merged-chr6-131264368-2	chr6	131263874	131264874	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17012.0	NM_008462	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	7.44	5.99	23.12	6.75	6.53	5.63	24.29	10.61	14.99
Merged-chr15-41790796-1	chr15	41790296	41791296	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130163, intron 1 of 13)	intron (NM_001130163, intron 1 of 13)	1281.0	NM_130885	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	1.72	4.15	5.55	6.07	4.67	7.23	3.17	4.42	5.62
Merged-chr19-3322745-1	chr19	3322245	3323245	+	850.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-556.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	115.55	117.04	142.44	87.71	69.98	130.21	156.32	175.54	100.55
Merged-chr15-86180567-1	chr15	86180067	86181067	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-5161.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	20.02	13.82	9.25	19.57	15.86	25.72	26.4	12.82	14.36
Merged-chr4-101132816-1	chr4	101132316	101133316	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 6 of 11)	intron (NM_183024, intron 6 of 11)	63778.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.29	4.61	2.77	1.35	3.73	0.0	1.06	2.21	4.37
Merged-chr17-79663611-1	chr17	79663111	79664111	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	48711.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	5.15	5.07	3.7	4.72	5.13	3.22	6.34	3.54	0.0
Merged-chr12-76405571-1	chr12	76405071	76406071	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008301, exon 1 of 1)	exon (NM_008301, exon 1 of 1)	1201.0	NM_008301	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	5.15	1.38	9.25	1.35	3.27	6.43	3.17	0.88	7.49
Merged-chr9-15717648-1	chr9	15717148	15718148	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172289, intron 1 of 10)	intron (NM_172289, intron 1 of 10)	7910.0	NM_172289	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	6.29	4.61	3.7	2.7	4.67	8.04	6.34	6.63	11.24
Merged-chr5-142458923-1	chr5	142458423	142459423	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199068, exon 9 of 9)	3' UTR (NM_199068, exon 9 of 9)	-5008.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	82.95	117.5	151.69	80.29	87.24	137.45	105.62	134.86	96.18
Merged-chr16-92336578-1	chr16	92336078	92337078	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15137.0	NM_029252	75328.0	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	5.15	1.84	3.7	1.35	3.73	3.22	1.06	0.88	3.12
Merged-chr15-73748290-3	chr15	73747795	73748795	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008975, exon 1 of 6)	5' UTR (NM_008975, exon 1 of 6)	269.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	9.15	2.76	4.62	14.17	12.6	16.08	17.96	7.96	6.87
Merged-chr15-53558164-3	chr15	53557648	53558648	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	56131.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	96.11	102.29	75.85	47.9	22.39	53.05	29.57	40.24	13.12
Merged-chr6-120112054-2	chr6	120111567	120112567	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	18687.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	88.1	64.51	62.9	109.98	60.18	64.3	86.61	97.28	49.34
Merged-chr19-48063510-3	chr19	48063005	48064005	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125793.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	8.58	9.68	1.85	16.87	17.73	32.96	6.34	10.61	9.99
Merged-chr14-79548472-1	chr14	79547972	79548972	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	Lx5|LINE|L1	32798.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	56.63	61.75	63.82	53.3	34.52	46.62	49.64	57.04	49.34
Merged-chr19-18620244-1	chr19	18619744	18620744	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11569.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	26.89	25.34	20.35	37.11	31.26	32.15	44.36	33.16	33.1
Merged-chr19-37174896-1	chr19	37174396	37175396	+	850.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290828, exon 2 of 11)	exon (NM_001290828, exon 2 of 11)	1053.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	209.37	182.01	152.62	186.9	128.76	143.88	195.39	180.85	114.29
Merged-chr3-116651182-1	chr3	116650682	116651682	+	850.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	11495.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	20.02	29.49	25.9	18.89	15.86	24.92	21.12	19.46	26.85
Merged-chr3-37654187-3	chr3	37653703	37654703	+	849.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14256.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	34.9	16.13	12.95	14.17	7.46	6.43	8.45	3.1	6.25
Merged-chr17-15938170-3	chr17	15937658	15938658	+	849.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-111572.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	5.15	5.07	1.85	1.35	3.27	3.22	2.11	6.19	7.49
Merged-chr11-120343923-4	chr11	120343524	120344524	+	849.908325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3389.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	20.02	9.68	12.95	10.8	7.46	20.9	11.62	3.54	11.24
Merged-chr5-143043495-3	chr5	143042987	143043987	+	849.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	69533.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	72.65	78.33	47.17	41.83	49.92	36.97	45.42	59.25	46.84
Merged-chr8-107455398-3	chr8	107454916	107455916	+	849.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025830, intron 2 of 23)	intron (NM_025830, intron 2 of 23)	19018.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	8.01	5.53	5.55	4.72	5.13	0.0	5.28	2.21	1.25
Merged-chr8-72297136-3	chr8	72296633	72297633	+	849.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-21929.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	66.93	108.75	94.35	103.23	71.84	113.33	84.49	118.5	102.42
Merged-chr5-36705963-2	chr5	36705448	36706448	+	849.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-9927.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	14.87	14.75	14.8	12.82	8.4	23.31	10.56	7.07	9.99
Merged-chr7-122298770-3	chr7	122298282	122299282	+	849.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MIRb|SINE|MIR	9657.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	52.63	69.12	46.25	41.16	19.13	10.45	26.4	18.13	13.12
Merged-chr7-83857341-3	chr7	83856843	83857843	+	849.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26998.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	18.88	10.14	9.25	15.52	8.4	9.65	13.73	3.1	4.37
Merged-chr3-54806569-1	chr3	54806069	54807069	+	849.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133231, intron 1 of 2)	intron (NM_133231, intron 1 of 2)	1222.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	16.02	16.13	20.35	24.29	22.39	14.47	9.51	17.24	16.24
Merged-chr5-34233940-3	chr5	34233436	34234436	+	849.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 4 of 12)	intron (NM_001015039, intron 4 of 12)	-46226.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	8.58	7.37	6.47	27.66	11.2	12.86	9.51	10.17	0.62
Merged-chr10-52309364-3	chr10	52308864	52309864	+	849.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025705, intron 6 of 10)	intron (NM_025705, intron 6 of 10)	72760.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	14.87	12.44	15.72	26.31	22.39	32.96	15.84	8.84	14.99
Merged-chr5-14049254-1	chr5	14048754	14049754	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011348, intron 1 of 16)	L3|LINE|CR1	23978.0	NM_011348	20349.0	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.57	3.69	1.85	2.7	4.2	8.04	2.11	1.77	2.5
Merged-chr6-113749255-2	chr6	113748735	113749735	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-8554.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	40.62	34.1	37.92	51.95	28.46	57.87	86.61	84.9	54.96
Merged-chr2-140783568-1	chr2	140783068	140784068	+	849.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-112092.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	10.3	5.07	18.5	7.42	7.0	9.65	8.45	4.86	7.49
Merged-chrX-7801542-3	chrX	7801048	7802048	+	849.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290455, exon 11 of 26)	exon (NM_001290455, exon 11 of 26)	-5553.0	NR_035430	100316807.0		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	13.73	11.06	10.17	18.22	12.6	7.23	12.67	16.36	10.62
Merged-chr2-90538746-3	chr2	90538239	90539239	+	849.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	41908.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	30.89	31.33	22.2	43.86	24.72	27.33	23.24	19.9	31.85
Merged-chr2-170351753-3	chr2	170351239	170352239	+	849.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029815, intron 11 of 12)	intron (NM_029815, intron 11 of 12)	-4622.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.72	6.45	3.7	3.37	7.0	2.41	5.28	2.21	2.5
Merged-chr11-50154393-3	chr11	50153883	50154883	+	849.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 10 of 20)	L1MB3|LINE|L1	-20468.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	42.33	34.56	11.1	56.68	43.39	19.29	17.96	17.24	4.37
Merged-chr2-35623213-2	chr2	35622723	35623723	+	849.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290641, intron 1 of 15)	intron (NM_001290641, intron 1 of 15)	1242.0	NM_001114124	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.15	9.68	11.1	9.45	6.53	16.08	8.45	5.75	5.0
Merged-chr8-43351143-2	chr8	43350636	43351636	+	849.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44127.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	2.86	3.23	0.0	4.72	4.67	8.04	4.22	8.4	5.0
Merged-chr17-46302097-2	chr17	46301591	46302591	+	849.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286013, intron 5 of 5)	intron (NM_001286013, intron 5 of 5)	4163.0	NM_001286013	106565.0	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta like non-canonical Notch ligand 2	protein-coding	4.0	4.15	13.87	12.14	6.53	12.06	9.51	11.05	5.62
Merged-chr12-81591624-3	chr12	81591111	81592111	+	849.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347384, intron 1 of 7)	intron (NM_001347384, intron 1 of 7)	3397.0	NM_001347385	69792.0	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	6.29	6.91	0.92	9.45	6.53	16.08	7.39	8.4	6.87
Merged-chr7-25785004-3	chr7	25784528	25785528	+	849.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	3705.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	26.31	18.89	37.92	38.46	21.93	49.83	67.6	48.64	25.61
Merged-chr1-190910057-3	chr1	190909550	190910550	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178775, intron 1 of 14)	intron (NM_178775, intron 1 of 14)	1720.0	NM_178775	320119.0	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	68.07	80.18	68.45	73.54	85.37	90.83	57.03	54.39	38.72
Merged-chrX-134583109-3	chrX	134582601	134583601	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013482)	promoter-TSS (NM_013482)	39.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	70.93	63.13	55.5	79.62	55.05	71.54	90.83	111.87	56.83
Merged-chr6-127338593-3	chr6	127338099	127339099	+	849.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30632.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.0	1.38	0.0	5.4	3.73	0.0	3.17	6.19	0.0
Merged-chr3-37361203-2	chr3	37360699	37361699	+	849.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12546.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	6.86	3.23	1.85	3.37	3.73	12.86	12.67	8.84	17.49
Merged-chr7-118518852-3	chr7	118518338	118519338	+	849.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304758, intron 5 of 6)	intron (NM_001304758, intron 5 of 6)	14518.0	NM_001304758	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	4.0	2.76	0.92	5.4	2.33	3.22	1.06	0.88	2.5
Merged-chr12-4038901-2	chr12	4038426	4039426	+	849.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082483)	promoter-TSS (NM_001082483)	-11.0	NM_001082483	668212.0	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	3.43	4.15	1.85	5.4	0.93	1.61	1.06	0.0	3.75
Merged-chr4-6376116-2	chr4	6375610	6376610	+	849.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	10430.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	60.64	62.21	42.55	73.54	78.37	67.52	95.06	84.45	49.34
Merged-chr17-43060909-2	chr17	43060409	43061409	+	849.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44354.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	153.88	161.27	89.72	153.84	156.28	116.55	61.26	58.81	38.72
Merged-chr4-95307312-3	chr4	95306826	95307826	+	849.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	5.72	4.15	5.55	8.1	2.33	0.0	12.67	6.19	14.36
Merged-chr15-79516430-3	chr15	79515981	79516981	+	849.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134090)	promoter-TSS (NM_134090)	73.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	4.58	5.53	12.95	15.52	7.0	3.22	7.39	0.88	9.99
Merged-chr11-117848626-3	chr11	117848132	117849132	+	849.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009689)	promoter-TSS (NM_009689)	-605.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	127.0	133.63	145.22	145.06	136.69	188.89	180.61	204.72	136.15
Merged-chr1-74398284-3	chr1	74397770	74398770	+	849.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153088)	TTS (NM_153088)	3960.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	47.48	39.17	38.85	35.76	29.39	69.93	67.6	42.01	51.21
Merged-chr5-45492407-3	chr5	45491924	45492924	+	849.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024434)	promoter-TSS (NM_024434)	-950.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	49.2	57.6	25.9	65.45	62.05	50.64	83.44	76.94	26.23
Merged-chr4-119883037-3	chr4	119882522	119883522	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	68344.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	18.31	14.75	13.87	19.57	19.13	17.68	21.12	5.75	7.49
Merged-chr17-84180959-1	chr17	84180459	84181459	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6988.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	53.77	37.32	30.52	41.16	27.99	40.99	39.08	32.28	26.85
Merged-chr13-104286025-3	chr13	104285525	104286525	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1810.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	124.71	89.39	67.52	122.8	100.77	84.4	115.12	157.85	66.82
Merged-chr18-60812190-1	chr18	60811690	60812690	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_039567)	TTS (NR_039567)	114.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	14.3	7.37	33.3	5.4	1.87	11.25	7.39	13.71	9.99
Merged-chr14-74976503-1	chr14	74976003	74977003	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	1417.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	9.15	5.07	1.85	10.12	4.2	3.22	6.34	2.21	0.0
Merged-chr17-26501011-2	chr17	26500546	26501546	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	7426.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	34.9	22.58	18.5	25.64	13.53	30.54	8.45	16.8	15.61
Merged-chr9-69667445-2	chr9	69666931	69667931	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93509.0	NM_022378	64290.0	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	2.29	2.3	4.62	3.37	1.87	3.22	1.06	0.44	2.5
Merged-chr3-9783326-1	chr3	9782826	9783826	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	50353.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.59	7.83	3.7	17.54	6.06	8.04	4.22	1.77	6.25
Merged-chr2-32846445-3	chr2	32845915	32846915	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	CpG	817.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	125.85	87.55	144.29	116.05	99.83	139.86	130.97	133.09	81.19
Merged-chr13-36695980-2	chr13	36695471	36696471	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38506.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.86	1.38	3.7	4.05	2.8	0.0	9.51	3.54	3.75
Merged-chr14-93654953-2	chr14	93654454	93655454	+	849.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	235715.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.57	4.15	3.7	4.05	8.86	8.04	3.17	1.33	3.75
Merged-chr14-22739781-1	chr14	22739281	22740281	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-196983.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	5.72	5.07	0.92	6.75	4.2	9.65	2.11	8.4	1.25
Merged-chr11-100527351-1	chr11	100526851	100527851	+	849.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134037, intron 1 of 27)	CpG	649.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	68.65	67.27	76.77	61.4	62.98	97.26	79.21	89.76	73.07
Merged-chr7-81074856-3	chr7	81074347	81075347	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054085, intron 3 of 13)	intron (NM_054085, intron 3 of 13)	17247.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	13.16	7.83	5.55	16.19	4.2	8.04	11.62	4.42	2.5
Merged-chr3-59185806-3	chr3	59185287	59186287	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302203, intron 1 of 2)	intron (NM_001302203, intron 1 of 2)	9317.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	13.16	12.44	1.85	11.47	5.13	8.04	8.45	9.73	12.49
Merged-chr9-72965520-3	chr9	72965029	72966029	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 4 of 6)	B1F|SINE|Alu	6744.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	10.87	12.9	4.62	16.87	6.06	12.86	9.51	6.63	5.0
Merged-chr15-4016455-3	chr15	4015970	4016970	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045740)	TTS (NR_045740)	-9958.0	NM_024188	67041.0	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	20.59	17.97	25.9	21.59	20.06	23.31	19.01	16.36	23.73
Merged-chr9-57589939-3	chr9	57589444	57590444	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027895, intron 1 of 15)	intron (NM_027895, intron 1 of 15)	492.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	93.82	76.49	60.12	97.83	57.85	59.48	100.34	72.96	28.1
Merged-chr6-15764322-3	chr6	15763837	15764837	+	849.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	43676.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	25.17	25.8	16.65	14.17	14.46	10.45	24.29	15.92	31.23
Merged-chr6-125342361-2	chr6	125341847	125342847	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 7 of 11)	L1M4|LINE|L1	-7376.0	NM_011609	21937.0	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	8.01	5.53	4.62	4.05	0.93	4.82	13.73	8.4	14.99
Merged-chr7-126707876-2	chr7	126707390	126708390	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3074.0	NM_009898	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	4.0	4.61	12.95	10.8	10.73	4.82	8.45	0.44	8.12
Merged-chr8-33928452-2	chr8	33927963	33928963	+	849.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	1400.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	7.44	6.91	9.25	8.77	7.93	8.84	33.8	29.63	16.24
Merged-chr2-169703088-2	chr2	169702640	169703640	+	849.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	B1F|SINE|Alu	69494.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	6.29	5.07	9.25	8.77	4.2	2.41	17.96	16.8	11.87
Merged-chr10-13016766-3	chr10	13016247	13017247	+	849.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8297.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	2.86	5.07	0.0	4.05	1.87	0.0	1.06	0.88	0.0
Merged-chr13-102846671-3	chr13	102846166	102847166	+	849.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	86411.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	5.15	10.14	3.7	14.17	11.2	9.65	14.79	5.75	5.0
Merged-chr5-140608177-4	chr5	140607721	140608721	+	849.3875119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	880.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	102.4	92.62	98.05	97.83	104.03	116.55	144.7	110.54	66.2
Merged-chr17-8164936-3	chr17	8164448	8165448	+	849.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197046)	promoter-TSS (NM_001197046)	-570.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	73.22	111.97	139.67	62.75	88.17	118.16	71.82	89.32	56.83
Merged-chr3-54248494-3	chr3	54247987	54248987	+	849.349182	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 3 of 11)	intron (NM_001253682, intron 3 of 11)	92430.0	NM_001253682	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	3.43	7.37	5.55	17.54	15.39	18.49	21.12	9.73	13.74
Merged-chr5-64204207-3	chr5	64203753	64204753	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-26104.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	67.5	73.26	62.9	53.98	54.11	70.73	94.0	80.03	43.09
Merged-chr17-25064391-1	chr17	25063891	25064891	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001183, intron 2 of 2)	intron (NM_001001183, intron 2 of 2)	16723.0	NM_001001183	407831.0	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	2.29	2.3	3.7	5.4	2.8	1.61	4.22	1.33	7.49
Merged-chr11-96935235-3	chr11	96934750	96935750	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146026, exon 3 of 3)	3' UTR (NM_146026, exon 3 of 3)	5926.0	NM_146026	217138.0	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	8.01	4.61	3.7	17.54	27.06	22.51	24.29	25.2	24.36
Merged-chr1-144309476-1	chr1	144308976	144309976	+	849.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-60372.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	11.44	10.14	5.55	10.8	7.0	8.84	14.79	10.61	10.62
Merged-chr12-105733544-3	chr12	105733047	105734047	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 6 of 17)	intron (NM_030187, intron 6 of 17)	27565.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	10.3	10.6	17.57	21.59	12.6	8.04	15.84	13.71	11.87
Merged-chr7-97400135-3	chr7	97399734	97400734	+	849.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024220, exon 1 of 3)	exon (NM_024220, exon 1 of 3)	231.0	NM_024220	68197.0	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	46.91	51.15	16.65	62.75	64.38	34.56	61.26	81.8	30.6
Merged-chr18-42762001-1	chr18	42761501	42762501	+	849.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	137505.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.57	8.29	4.62	7.42	8.86	4.82	5.28	5.75	3.75
Merged-chr2-168229863-3	chr2	168229389	168230389	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160330)	promoter-TSS (NM_001160330)	490.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	534.87	643.25	435.65	455.43	533.22	353.67	472.11	497.44	292.28
Merged-chr2-45114776-3	chr2	45114268	45115268	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_110572)	TTS (NR_110572)	-1489.0	NM_015753	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	119.56	174.64	69.37	104.58	94.7	117.35	125.69	151.22	109.29
Merged-chr2-122409170-3	chr2	122408664	122409664	+	849.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31656.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	79.52	130.86	85.1	72.87	101.23	66.71	106.67	108.77	79.94
Merged-chr1-84838676-4	chr1	84838119	84839119	+	849.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133975, intron 1 of 40)	CpG	685.0	NM_133975	14897.0	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	144.73	146.53	182.22	169.35	151.15	192.11	193.28	160.95	134.9
Merged-chr2-181220077-2	chr2	181219544	181220544	+	849.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199312)	promoter-TSS (NM_199312)	28.0	NM_199312	332713.0	Mm.23349	NM_199312	ENSMUSG00000047841	Fndc11	1700026M20Rik	fibronectin type III domain containing 11	protein-coding	1.72	0.92	0.0	7.42	3.27	11.25	6.34	2.65	4.37
Merged-chr9-52172516-2	chr9	52172030	52173030	+	849.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	5.72	6.91	4.62	8.77	4.2	1.61	1.06	1.77	3.75
Merged-chr11-115676919-3	chr11	115676424	115677424	+	849.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	22610.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	65.21	52.07	29.6	86.36	52.72	28.94	83.44	56.6	22.48
Merged-chr18-53921647-3	chr18	53921215	53922215	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59602.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	54.92	64.51	25.9	91.09	47.58	52.25	116.18	116.73	51.21
Merged-chr1-34855857-3	chr1	34855345	34856345	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	(TTTTG)n|Simple_repeat|Simple_repeat	5856.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	44.05	77.41	35.15	91.76	84.44	97.26	174.27	211.36	78.07
Merged-chr1-72282793-3	chr1	72282282	72283282	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356516, intron 1 of 6)	intron (NM_001356516, intron 1 of 6)	1539.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	6.29	2.76	6.47	6.07	1.4	6.43	5.28	5.31	3.75
Merged-chr5-122698838-3	chr5	122698355	122699355	+	849.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8689.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	101.25	71.42	38.85	134.27	95.63	50.64	35.91	17.69	21.23
Merged-chr10-119040429-3	chr10	119039937	119040937	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152787, intron 3 of 3)	intron (NR_152787, intron 3 of 3)	10062.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	108.12	98.15	53.65	145.06	144.62	127.0	155.26	154.32	82.44
Merged-chr19-32494820-3	chr19	32494322	32495322	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9053.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	36.61	29.49	13.87	18.22	22.39	12.86	57.03	56.6	24.98
Merged-chr9-90109551-3	chr9	90109053	90110053	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 2 of 12)	intron (NM_001039147, intron 2 of 12)	5267.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	61.21	82.02	22.2	72.87	73.24	52.25	118.29	115.41	52.46
Merged-chr9-65533586-3	chr9	65533077	65534077	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	46510.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	189.92	164.96	177.59	146.41	107.76	147.9	114.07	158.74	91.81
Merged-chr3-30904812-3	chr3	30904304	30905304	+	849.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001165955, exon 14 of 14)	3' UTR (NM_001165955, exon 14 of 14)	48854.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	18.31	13.82	25.9	15.52	19.59	17.68	20.07	22.11	16.24
Merged-chr9-22530911-2	chr9	22530421	22531421	+	849.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	PB1D10|SINE|Alu	55206.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	11.44	2.3	16.65	8.77	6.06	9.65	6.34	3.1	1.25
Merged-chr10-19850877-2	chr10	19850371	19851371	+	849.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029529, exon 1 of 2)	exon (NM_029529, exon 1 of 2)	588.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	6.86	1.38	1.85	6.75	1.87	4.02	5.28	1.77	4.37
Merged-chr4-140679891-3	chr4	140679394	140680394	+	849.1222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13989.0	NM_001112722	72754.0	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	2.29	4.61	0.0	3.37	3.73	0.0	4.22	0.88	1.25
Merged-chr10-127526873-3	chr10	127526379	127527379	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183297, exon 2 of 2)	exon (NM_183297, exon 2 of 2)	-4435.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	4.0	1.84	3.7	4.72	0.0	0.0	5.28	3.54	3.75
Merged-chr2-29620105-3	chr2	29619618	29620618	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	CpG	398.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	158.46	113.81	89.72	126.17	109.16	94.04	144.7	100.81	50.59
Merged-chr7-44837161-3	chr7	44836658	44837658	+	849.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171024, intron 4 of 8)	intron (NM_001171024, intron 4 of 8)	870.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	46.91	24.42	37.0	35.76	23.79	28.94	44.36	36.7	43.09
Merged-chr17-86293532-3	chr17	86292996	86293996	+	849.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-6318.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	10.3	3.23	1.85	4.72	1.87	3.22	3.17	7.07	1.25
Merged-chr6-8345639-2	chr6	8345126	8346126	+	849.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	86338.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	4.58	8.29	5.55	12.14	7.46	4.02	16.9	15.03	11.24
Merged-chr11-119378750-2	chr11	119378229	119379229	+	849.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 15 of 16)	intron (NM_178743, intron 15 of 16)	-11743.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	20.59	18.43	5.55	25.64	12.6	18.49	32.74	21.67	8.74
Merged-chr5-64381780-3	chr5	64381265	64382265	+	849.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86177.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	82.38	79.25	86.95	93.79	51.32	81.99	70.76	73.84	56.21
Merged-chr10-118050479-3	chr10	118049980	118050980	+	849.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91307.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	29.75	21.2	14.8	37.11	24.26	23.31	36.97	20.78	21.86
Merged-chr6-85369624-3	chr6	85369119	85370119	+	849.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	5015.0	NM_177466	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	4.58	11.06	1.85	10.8	12.6	24.92	6.34	3.54	7.49
Merged-chr6-122599365-4	chr6	122598833	122599833	+	849.0416869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	ID_B1|SINE|B4	3111.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	169.9	191.69	142.44	167.33	106.36	98.87	216.52	280.33	118.04
Merged-chr9-110692660-2	chr9	110692151	110693151	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 2 of 6)	URR1B|DNA|hAT-Charlie	36148.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	11.44	7.83	11.1	9.45	7.0	12.86	11.62	7.52	2.5
Merged-chr6-112739825-2	chr6	112739330	112740330	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080448, intron 15 of 21)	intron (NM_080448, intron 15 of 21)	-43160.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	91.53	85.25	98.05	63.42	56.45	66.71	71.82	69.86	49.34
Merged-chr15-81178053-1	chr15	81177553	81178553	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	12704.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.43	8.29	1.85	9.45	8.4	5.63	9.51	3.1	8.74
Merged-chr3-15126382-1	chr3	15125882	15126882	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	155181.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	17.73	17.05	5.55	15.52	13.53	20.9	5.28	10.61	7.49
Merged-chr14-64368427-1	chr14	64367927	64368927	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 1 of 4)	intron (NM_001253715, intron 1 of 4)	48529.0	NM_001253716	110265.0	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	3.43	5.99	7.4	6.75	9.33	8.04	7.39	2.65	3.75
Merged-chr7-81842048-1	chr7	81841548	81842548	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12617.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	19.45	8.75	15.72	10.12	9.33	17.68	6.34	6.19	10.62
Merged-chr7-79732895-1	chr7	79732395	79733395	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113471)	promoter-TSS (NM_001113471)	-119.0	NM_001113471	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.57	3.69	3.7	4.05	0.47	0.0	2.11	1.33	1.25
Merged-chr18-13027426-1	chr18	13026926	13027926	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20436.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	2.29	5.07	1.85	3.37	1.87	0.0	3.17	3.54	0.0
Merged-chr1-106214309-1	chr1	106213809	106214809	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	42440.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	6.86	5.07	7.4	8.77	6.06	8.04	7.39	0.88	7.49
Merged-chr12-102246471-1	chr12	102245971	102246971	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-36603.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	4.0	3.69	19.42	2.7	2.33	10.45	4.22	3.1	2.5
Merged-chr19-27411329-1	chr19	27410829	27411829	+	849.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177474, intron 13 of 17)	intron (NM_177474, intron 13 of 17)	18579.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	21.74	17.05	25.9	5.4	5.13	12.06	25.35	22.11	16.24
Merged-chr17-80445948-3	chr17	80445385	80446385	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 6 of 21)	intron (NM_009231, intron 6 of 21)	34568.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	48.05	48.38	25.9	69.5	60.18	31.35	125.69	154.76	52.46
Merged-chr6-96105754-1	chr6	96105254	96106254	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-7400.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	2.86	0.46	0.0	4.05	7.46	12.86	5.28	2.21	6.25
Merged-chr17-34280814-1	chr17	34280314	34281314	+	849.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6957.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	4.58	1.38	1.85	1.35	0.47	0.0	4.22	2.65	9.99
Merged-chr9-3015717-1	chr9	3015217	3016217	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	23026.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	24.6	108.75	30.52	23.62	138.55	26.53	35.91	60.58	24.36
Merged-chr16-29839264-1	chr16	29838764	29839764	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139860.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	8.58	2.76	2.77	7.42	4.2	6.43	2.11	5.75	1.25
Merged-chr14-118507908-1	chr14	118507408	118508408	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 25 of 29)	intron (NM_001163676, intron 25 of 29)	84564.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	9.15	10.6	8.32	8.77	13.53	9.65	3.17	5.31	2.5
Merged-chr13-102860336-1	chr13	102859836	102860836	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	100081.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	8.58	6.45	8.32	8.77	7.0	5.63	8.45	6.63	8.74
Merged-chr13-110561258-3	chr13	110560753	110561753	+	849.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	166209.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	90.96	87.09	62.9	62.75	89.57	96.45	83.44	98.6	53.08
Merged-chr13-96011330-2	chr13	96010831	96011831	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-119409.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	4.0	2.3	5.55	4.72	7.0	6.43	3.17	0.88	7.49
Merged-chr2-163754469-1	chr2	163753969	163754969	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4230.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.86	8.29	7.4	18.22	8.4	9.65	8.45	2.21	7.49
Merged-chr3-22021693-2	chr3	22021186	22022186	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54966.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.44	5.53	5.55	4.72	7.93	9.65	6.34	3.54	9.99
Merged-chr2-34577676-1	chr2	34577176	34578176	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290625, intron 8 of 11)	intron (NM_001290625, intron 8 of 11)	170825.0	NM_001290626	227743.0	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	4.0	3.23	1.85	10.8	10.26	6.43	12.67	11.94	12.49
Merged-chr9-21446437-2	chr9	21445926	21446926	+	849.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	21518.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	25.74	14.28	22.2	18.22	17.73	19.29	17.96	18.13	16.86
Merged-chr8-80263099-3	chr8	80262613	80263613	+	848.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-205105.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	16.59	17.97	16.65	13.49	5.6	15.27	16.9	5.31	17.49
Merged-chr3-139021933-3	chr3	139021447	139022447	+	848.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	53254.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	36.61	55.29	37.0	39.81	38.25	35.37	26.4	21.67	33.1
Merged-chr8-120711388-3	chr8	120710903	120711903	+	848.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-24955.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	46.34	52.53	68.45	47.23	40.12	20.9	74.99	70.75	48.09
Merged-chr4-126051821-3	chr4	126051326	126052326	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025544, intron 5 of 7)	intron (NM_025544, intron 5 of 7)	4898.0	NM_025544	66407.0	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	12.59	6.45	22.2	10.8	3.27	9.65	12.67	9.73	14.36
Merged-chr9-70842912-3	chr9	70842404	70843404	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	91904.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	65.21	50.23	54.57	74.89	44.32	78.77	60.2	51.73	71.2
Merged-chr15-7863745-3	chr15	7863238	7864238	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48188.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	7.44	5.99	2.77	4.72	12.6	7.23	4.22	6.63	8.74
Merged-chr1-16505113-3	chr1	16504593	16505593	+	848.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347044, intron 4 of 13)	RMER1C|Other|Other	14022.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	17.73	9.22	22.2	16.87	11.2	10.45	8.45	1.77	7.49
Merged-chr13-29983754-3	chr13	29983273	29984273	+	848.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	618.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	138.44	117.96	92.5	119.43	97.5	92.44	136.25	80.92	69.95
Merged-chr18-23812323-3	chr18	23811697	23812697	+	848.822205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	8227.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	100.11	89.39	97.12	89.06	69.51	92.44	91.89	82.24	63.08
Merged-chr1-128632797-3	chr1	128632345	128633345	+	848.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40546.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	34.9	41.93	47.17	37.11	39.19	57.07	33.8	36.26	34.97
Merged-chr13-65097253-3	chr13	65096759	65097759	+	848.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083901, intron 2 of 12)	ORR1D2-int|LTR|ERVL-MaLR	15723.0	NM_001083901	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	14.3	11.52	10.17	13.49	10.26	9.65	10.56	10.61	17.49
Merged-chr19-3980548-3	chr19	3980057	3981057	+	848.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177438, intron 8 of 9)	intron (NM_001177438, intron 8 of 9)	-6013.0	NM_001302479	71670.0	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	6.29	1.38	1.85	2.7	4.2	3.22	0.0	3.1	7.49
Merged-chr10-128097897-3	chr10	128097363	128098363	+	848.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054078, intron 2 of 29)	intron (NM_054078, intron 2 of 29)	5080.0	NM_054078	116848.0	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	152.74	135.93	114.69	112.0	99.83	120.57	140.47	152.11	104.92
Merged-chr17-27028114-2	chr17	27027630	27028630	+	848.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	497.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	193.35	171.41	165.57	180.15	218.79	166.38	227.08	283.43	113.66
Merged-chr12-86825058-2	chr12	86824561	86825561	+	848.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59753.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	24.03	20.74	3.7	24.29	25.19	18.49	28.52	16.36	16.24
Merged-chr15-90623691-3	chr15	90623204	90624204	+	848.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	55684.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	13.16	10.6	16.65	38.46	15.86	9.65	14.79	5.75	8.12
Merged-chr6-88831676-3	chr6	88831199	88832199	+	848.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10236.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	36.04	30.87	25.9	23.62	17.26	14.47	26.4	24.32	7.49
Merged-chr2-11299514-3	chr2	11298994	11299994	+	848.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 17 of 17)	intron (NM_008859, intron 17 of 17)	-39995.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	22.31	16.59	12.95	15.52	8.4	20.9	17.96	11.05	8.12
Merged-chr4-120087921-1	chr4	120087421	120088421	+	848.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 3 of 8)	L1M4|LINE|L1	-73285.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.0	3.69	3.7	3.37	4.67	0.8	5.28	2.65	3.75
Merged-chrUn_JH584304-103885-1	chrUn_JH584304	103385	104385	+	848.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-44196.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	24.29	24.32	0.0
Merged-chr5-34285505-1	chr5	34285005	34286005	+	848.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	2819.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	6.29	4.15	7.4	5.4	3.27	0.0	4.22	2.21	2.5
Merged-chr11-104361927-2	chr11	104361421	104362421	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	RLTR19|LTR|ERVK	80370.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	38.9	27.65	18.5	26.99	18.66	33.76	23.24	17.69	19.98
Merged-chr16-5445968-2	chr16	5445463	5446463	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-190007.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	15.45	13.82	18.5	12.14	6.53	4.82	5.28	3.54	2.5
Merged-chr7-35106801-2	chr7	35106301	35107301	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-12492.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	8.01	18.89	14.8	20.92	13.53	25.72	10.56	6.19	8.74
Merged-chr5-5359477-2	chr5	5358953	5359953	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	20798.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	54.92	65.43	18.5	64.1	59.71	28.94	52.81	61.02	21.86
Merged-chr7-89178163-2	chr7	89177661	89178661	+	848.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	160626.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.15	8.75	8.32	8.77	5.13	8.04	6.34	3.1	3.75
Merged-chrX-73911242-3	chrX	73910760	73911760	+	848.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162423)	promoter-TSS (NM_001162423)	38.0	NM_138630	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	110.41	122.11	140.59	100.53	98.43	90.02	126.74	147.68	103.05
Merged-chr1-120467507-2	chr1	120467002	120468002	+	848.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37522.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	4.58	2.3	0.0	2.02	2.33	0.0	7.39	3.54	8.74
Merged-chr9-58269080-2	chr9	58268572	58269572	+	848.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15908.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	28.03	21.2	19.42	33.74	22.86	37.78	47.53	46.87	26.85
Merged-chr10-8792550-3	chr10	8792066	8793066	+	848.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	93504.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.02	5.53	15.72	10.12	3.73	12.06	10.56	2.21	7.49
Merged-chr2-91183336-3	chr2	91182829	91183829	+	848.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	-282.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	49.2	56.22	78.62	68.15	41.05	65.11	48.58	36.26	49.34
Merged-chr6-72377143-1	chr6	72376643	72377643	+	848.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	3325.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	37.76	24.42	24.05	29.01	34.52	23.31	23.24	19.9	12.49
Merged-chr2-29466603-2	chr2	29466096	29467096	+	848.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290489, intron 2 of 6)	L1MA8|LINE|L1	8698.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	6.86	9.22	9.25	6.07	8.4	11.25	11.62	5.75	11.24
Merged-chr13-97573259-3	chr13	97572748	97573748	+	848.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	intron (NR_046157, intron 2 of 2)	13248.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	33.18	21.2	27.75	14.17	9.8	9.65	36.97	28.3	9.37
Merged-chr10-60933641-2	chr10	60933157	60934157	+	848.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4475.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	17.16	13.36	9.25	61.4	56.91	56.27	86.61	87.55	48.71
Merged-chr3-31328011-2	chr3	31327513	31328513	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17694.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.15	1.84	0.0	6.75	5.6	10.45	5.28	6.19	1.25
Merged-chr7-83571297-2	chr7	83570798	83571798	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13633.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	15.45	7.83	8.32	12.14	7.46	6.43	26.4	13.71	12.49
Merged-chr14-122010519-1	chr14	122010019	122011019	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-24155.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	28.03	35.94	7.4	49.93	36.85	25.72	21.12	19.46	14.99
Merged-chrX-13469362-3	chrX	13468859	13469859	+	848.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	intron (NM_173415, intron 2 of 2)	1687.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	48.62	62.21	32.37	57.35	46.18	55.46	42.25	37.58	35.6
Merged-chr10-41893894-1	chr10	41893394	41894394	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	6455.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	33.75	26.73	53.65	42.51	20.53	44.21	26.4	22.99	26.85
Merged-chr10-71261817-1	chr10	71261317	71262317	+	848.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145420, intron 3 of 6)	intron (NM_145420, intron 3 of 6)	23445.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	15.45	17.97	16.65	18.22	20.99	21.7	8.45	16.36	9.37
Merged-chr16-44762071-3	chr16	44761542	44762542	+	848.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3694.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	23.45	46.08	35.15	21.59	27.99	31.35	31.69	38.03	28.1
Merged-chr9-42945403-3	chr9	42944950	42945950	+	848.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1079.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	11.44	5.99	5.55	9.45	5.13	0.0	8.45	6.63	2.5
Merged-chr10-88720040-3	chr10	88719553	88720553	+	848.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11048.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	80.66	96.76	76.77	103.91	77.91	92.44	97.17	89.32	71.82
Merged-chr15-35799619-2	chr15	35799114	35800114	+	848.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 39 of 61)	MTB|LTR|ERVL-MaLR	-138567.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	13.73	12.9	5.55	17.54	14.46	25.72	14.79	10.61	19.36
Merged-chr10-117677196-2	chr10	117676708	117677708	+	848.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 7 of 8)	intron (NM_027468, intron 7 of 8)	33550.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	3.43	2.76	0.0	6.75	4.67	1.61	8.45	4.42	3.75
Merged-chr10-53877482-1	chr10	53876982	53877982	+	848.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126573.0	NM_001081428	75906.0	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	10.87	5.99	18.5	12.14	8.86	19.29	5.28	3.1	11.24
Merged-chr7-127165804-3	chr7	127165307	127166307	+	848.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27984.0	NM_001037810	20737.0	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	8.01	7.83	18.5	20.24	5.13	12.06	13.73	21.67	24.98
Merged-chr2-126682443-3	chr2	126681934	126682934	+	848.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6097.0	NM_001271470	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	30.89	44.24	44.4	27.66	23.33	41.8	42.25	48.2	48.09
Merged-chr17-33979629-2	chr17	33979125	33980125	+	848.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004446)	promoter-TSS (NR_004446)	-834.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	92.1	53.45	22.2	100.53	59.25	45.82	147.87	173.77	79.32
Merged-chrX-85874439-4	chrX	85873918	85874918	+	848.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	L1_Rod|LINE|L1	4145.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	34.9	51.61	18.5	28.34	25.19	17.68	46.47	52.18	19.98
Merged-chr10-88330948-2	chr10	88330431	88331431	+	848.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	26144.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	7.44	9.22	31.45	7.42	4.67	12.86	17.96	7.96	29.98
Merged-chr7-141165043-3	chr7	141164527	141165527	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172100, intron 2 of 9)	intron (NM_001172100, intron 2 of 9)	3659.0	NM_001172101	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	13.16	5.53	9.25	14.84	12.13	26.53	11.62	6.19	10.62
Merged-chr14-78849747-3	chr14	78849240	78850240	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027906, intron 1 of 44)	intron (NM_027906, intron 1 of 44)	562.0	NM_173758	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	48.62	30.41	20.35	61.4	74.64	39.39	64.43	36.26	17.49
Merged-chr2-34790490-3	chr2	34789998	34790998	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145522, intron 4 of 7)	intron (NM_145522, intron 4 of 7)	9414.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	17.16	8.75	3.7	7.42	14.0	4.82	9.51	12.82	7.49
Merged-chr19-59028169-1	chr19	59027669	59028669	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175172, exon 8 of 15)	exon (NM_175172, exon 8 of 15)	47900.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	10.87	11.06	23.12	9.45	4.67	9.65	13.73	10.17	12.49
Merged-chr5-151210599-3	chr5	151210115	151211115	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20422.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	128.71	182.01	95.27	173.4	143.68	98.06	284.11	299.79	117.41
Merged-chr10-69213638-3	chr10	69213144	69214144	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331193)	promoter-TSS (NM_001331193)	450.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	121.85	90.31	129.49	152.49	86.77	90.02	157.37	97.28	83.06
Merged-chr5-140138229-1	chr5	140137729	140138729	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359027, intron 1 of 6)	intron (NM_001359027, intron 1 of 6)	36689.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	13.16	17.05	5.55	12.82	12.6	36.97	16.9	3.1	11.24
Merged-chr10-117418622-3	chr10	117418125	117419125	+	848.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28810.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	74.94	52.53	49.95	107.28	66.71	116.55	105.62	119.83	64.33
Merged-chr3-20026668-1	chr3	20026168	20027168	+	848.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	intron (NM_080634, intron 4 of 16)	8642.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	71.51	73.73	65.67	69.5	46.65	72.34	57.03	45.99	43.72
Merged-chr12-24975599-3	chr12	24975112	24976112	+	848.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	680.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	42.9	32.72	69.37	22.27	28.92	72.34	86.61	57.92	32.48
Merged-chrX-167262870-3	chrX	167262350	167263350	+	848.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	intron (NM_001313760, intron 1 of 1)	1479.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	54.35	84.32	32.37	59.38	73.71	59.48	58.09	94.62	41.84
Merged-chr12-118846691-2	chr12	118846180	118847180	+	848.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177082, intron 1 of 2)	intron (NM_177082, intron 1 of 2)	351.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	5.15	4.15	5.55	4.05	2.33	0.0	5.28	3.1	1.25
Merged-chr7-110625820-4	chr7	110625376	110626376	+	848.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1781.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	10.3	18.89	16.65	41.83	33.59	34.56	64.43	41.56	28.73
Merged-chr15-97573234-1	chr15	97572734	97573734	+	848.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	132588.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	10.87	5.99	1.85	10.12	10.73	6.43	7.39	3.98	1.25
Merged-chr5-122550629-3	chr5	122550148	122551148	+	848.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001358917, exon 19 of 19)	3' UTR (NM_001358917, exon 19 of 19)	-48423.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	74.37	105.06	61.97	100.53	97.97	65.91	71.82	66.77	59.33
Merged-chr1-176835634-3	chr1	176835167	176836167	+	848.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	466.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	135.0	104.14	117.47	101.21	78.84	128.61	100.34	121.15	87.43
Merged-chr2-51108874-2	chr2	51108368	51109368	+	848.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40243.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	17.73	9.22	3.7	4.72	3.27	0.0	6.34	1.33	5.0
Merged-chr9-3023603-3	chr9	3023186	3024186	+	848.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	15057.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	217.38	1041.37	449.53	271.91	1079.03	468.61	17.96	20.34	542.71
Merged-chr13-74362349-3	chr13	74361866	74362866	+	848.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001168658, exon 4 of 4)	3' UTR (NM_001168658, exon 4 of 4)	1634.0	NM_001033042	432779.0	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	16.02	11.52	13.87	7.42	5.13	14.47	12.67	7.96	5.62
Merged-chr7-111370726-3	chr7	111370227	111371227	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248052.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	4.58	3.69	7.4	3.37	5.6	9.65	12.67	7.52	3.12
Merged-chr17-25139000-3	chr17	25138492	25139492	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317404, intron 1 of 24)	B4|SINE|B4	2361.0	NM_001317404	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	9.72	16.13	24.05	20.24	12.6	26.53	54.92	45.99	48.09
Merged-chr16-11418469-3	chr16	11417949	11418949	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 9 of 20)	intron (NM_028964, intron 9 of 20)	12801.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	8.01	8.75	7.4	10.12	6.53	16.08	4.22	2.21	14.36
Merged-chr11-23846629-3	chr11	23846130	23847130	+	848.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48640.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	14.87	11.52	8.32	22.27	12.6	16.08	9.51	15.03	6.25
Merged-chr17-43052627-2	chr17	43052128	43053128	+	848.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	36073.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	19.45	17.97	25.9	29.69	19.13	29.74	5.28	6.19	6.25
Merged-chr15-38709761-3	chr15	38709282	38710282	+	848.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18734.0	NR_131206	105463124.0	Mm.432448	NR_131206	ENSMUSG00000115620	Gm45924	Borg	predicted gene, 45924	ncRNA	56.06	44.7	25.9	45.88	32.66	53.85	38.02	37.58	23.73
Merged-chr10-94417875-3	chr10	94417387	94418387	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	-96970.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	20.02	9.68	14.8	6.07	8.4	12.86	12.67	7.96	3.75
Merged-chr15-31225037-3	chr15	31224604	31225604	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146057, intron 1 of 3)	intron (NM_146057, intron 1 of 3)	719.0	NM_146057	223453.0	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	33.75	35.48	20.35	72.19	55.51	58.68	63.37	47.31	32.48
Merged-chr12-40583919-3	chr12	40583436	40584436	+	848.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	ORR1D2|LTR|ERVL-MaLR	137883.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	98.97	91.7	48.1	72.87	75.57	57.87	67.6	49.96	47.46
Merged-chr4-111687828-2	chr4	111687330	111688330	+	848.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32180.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	5.15	1.84	0.0	5.4	7.46	5.63	7.39	1.77	2.5
Merged-chr13-101696073-3	chr13	101695572	101696572	+	848.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-3442.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	21.74	29.03	32.37	25.64	23.79	24.11	19.01	44.66	18.11
Merged-chr7-119720291-1	chr7	119719791	119720791	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145585, intron 2 of 4)	CpG	3328.0	NM_145585	233802.0	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	54.35	42.39	24.05	69.5	62.51	61.09	63.37	48.2	30.6
Merged-chr15-88026255-1	chr15	88025755	88026755	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-230312.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	5.15	5.53	0.0	3.37	2.33	2.41	0.0	1.33	2.5
Merged-chr2-93624878-3	chr2	93624363	93625363	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17571.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	3.43	1.38	7.4	3.37	0.47	1.61	8.45	0.0	3.75
Merged-chr7-25249080-2	chr7	25248564	25249564	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	CpG	1694.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	91.53	78.79	93.42	64.77	62.98	72.34	76.05	91.53	71.82
Merged-chr5-92656405-3	chr5	92655923	92656923	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360020, intron 9 of 9)	intron (NM_001360020, intron 9 of 9)	18704.0	NM_001360018	320696.0	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	13.73	5.99	3.7	6.07	4.2	3.22	5.28	3.1	6.25
Merged-chr18-80843922-1	chr18	80843422	80844422	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015805, intron 10 of 28)	intron (NM_015805, intron 10 of 28)	90136.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	6.29	6.45	0.0	6.07	1.4	8.84	7.39	2.65	2.5
Merged-chr2-164414800-3	chr2	164414305	164415305	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009036, exon 12 of 12)	3' UTR (NM_009036, exon 12 of 12)	-9645.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	8.58	5.07	5.55	14.84	7.46	9.65	7.39	4.86	0.0
Merged-chr19-21035046-3	chr19	21034538	21035538	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69672.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	25.17	35.94	23.12	26.31	20.53	32.15	20.07	16.8	27.48
Merged-chr5-110809387-1	chr5	110808887	110809887	+	848.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347394, intron 1 of 27)	intron (NM_001347394, intron 1 of 27)	694.0	NM_009469	22241.0	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	192.78	168.19	173.89	153.84	136.69	165.58	160.54	110.1	91.81
Merged-chr8-56691866-1	chr8	56691366	56692366	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140732.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.58	2.3	3.7	3.37	2.33	3.22	1.06	0.0	0.62
Merged-chr10-125331554-3	chr10	125331053	125332053	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2590.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	50.91	50.69	46.25	68.82	67.64	49.83	51.75	55.71	39.97
Merged-chr16-50538018-1	chr16	50537518	50538518	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040379, intron 2 of 5)	intron (NR_040379, intron 2 of 5)	9516.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	6.29	10.6	9.25	12.14	10.26	14.47	6.34	3.98	2.5
Merged-chr14-31397962-1	chr14	31397462	31398462	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	19715.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	48.62	43.31	37.92	63.42	40.12	56.27	46.47	24.32	32.48
Merged-chr4-155122070-1	chr4	155121570	155122570	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	35466.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	10.87	10.6	4.62	32.39	28.92	27.33	12.67	6.63	3.75
Merged-chrX-143369946-1	chrX	143369446	143370446	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358592, intron 2 of 11)	Lx7|LINE|L1	24316.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	0.57	2.3	7.4	0.0	2.33	3.22	0.0	0.44	8.74
Merged-chr4-88641687-1	chr4	88641187	88642187	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2772.0	NM_177347	230396.0	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	11.44	8.29	27.75	5.4	10.26	25.72	10.56	19.01	14.99
Merged-chr15-59722746-1	chr15	59722246	59723246	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72213.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	29.17	18.89	12.02	29.01	23.33	23.31	22.18	16.36	31.23
Merged-chr2-38291699-1	chr2	38291199	38292199	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-4315.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	5.72	9.22	21.27	14.84	9.8	14.47	5.28	3.54	4.37
Merged-chr14-74797583-1	chr14	74797083	74798083	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 13 of 19)	intron (NM_001033439, intron 13 of 19)	65286.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.29	6.45	12.95	6.07	3.73	10.45	7.39	6.19	5.0
Merged-chr3-66973487-1	chr3	66972987	66973987	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302359, exon 5 of 5)	3' UTR (NM_001302359, exon 5 of 5)	5324.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	5.72	1.84	0.92	2.7	0.47	0.0	0.0	3.1	7.49
Merged-chr5-146231892-1	chr5	146231392	146232392	+	848.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	642.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	57.21	47.0	59.2	64.77	42.92	65.11	79.21	30.51	43.09
Merged-chr1-55576167-1	chr1	55575667	55576667	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170221.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	3.43	5.99	1.85	9.45	10.73	9.65	3.17	3.98	5.0
Merged-chr5-9103717-2	chr5	9103230	9104230	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	2993.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	41.76	62.21	36.07	44.53	30.32	22.51	54.92	48.64	38.72
Merged-chr5-92934445-3	chr5	92933937	92934937	+	848.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077596, intron 3 of 9)	MIR|SINE|MIR	36444.0	NM_001077596	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	14.87	15.67	9.25	1.35	1.4	0.0	16.9	14.15	9.37
Merged-chr2-156862256-2	chr2	156861766	156862766	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026124)	promoter-TSS (NM_026124)	679.0	NR_015591	74487.0	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	166.47	200.44	140.59	165.98	159.55	163.97	184.83	237.44	141.14
Merged-chr11-77688020-1	chr11	77687520	77688520	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024205, intron 1 of 3)	intron (NM_001024205, intron 1 of 3)	1881.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	96.68	79.25	86.02	74.89	74.64	79.58	64.43	59.25	68.7
Merged-chr1-93631528-1	chr1	93631028	93632028	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021537, intron 2 of 11)	intron (NM_021537, intron 2 of 11)	4199.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	9.72	11.98	14.8	12.82	9.8	4.82	2.11	9.29	8.74
Merged-chr15-64179165-1	chr15	64178665	64179665	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118717.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.01	11.06	16.65	6.07	12.13	8.04	7.39	5.31	9.99
Merged-chr5-16045609-1	chr5	16045109	16046109	+	848.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 3 of 38)	intron (NM_001110843, intron 3 of 38)	110918.0	NM_001110844	12293.0	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	4.58	5.07	1.85	4.72	6.53	4.82	5.28	4.86	3.75
Merged-chr6-72955076-3	chr6	72954555	72955555	+	847.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3177.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	10.3	2.3	1.85	7.42	4.2	4.82	4.22	2.21	8.74
Merged-chr11-80185350-3	chr11	80184947	80185947	+	847.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028019, intron 1 of 4)	L1MB7|LINE|L1	1575.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	32.61	32.25	34.22	60.05	45.72	45.82	45.42	47.31	31.23
Merged-chr8-84910167-2	chr8	84909662	84910662	+	847.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010062, intron 5 of 5)	intron (NM_010062, intron 5 of 5)	1538.0	NM_010062	13423.0	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	58.92	45.62	35.15	81.64	64.84	27.33	41.19	45.99	13.12
Merged-chr5-107921578-3	chr5	107921067	107922067	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	21039.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	8.58	5.07	0.92	4.72	4.67	3.22	11.62	3.1	6.25
Merged-chr13-41468472-3	chr13	41467987	41468987	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	18873.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	34.9	52.07	29.6	64.77	67.64	120.57	54.92	37.14	74.32
Merged-chr18-32390198-3	chr18	32389701	32390701	+	847.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-11917.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	41.19	33.64	41.62	40.48	32.19	39.39	27.46	19.9	19.36
Merged-chr2-166289428-3	chr2	166288906	166289906	+	847.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033467, intron 2 of 2)	intron (NR_033467, intron 2 of 2)	15498.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	3.43	4.15	1.85	8.1	4.67	4.82	4.22	1.33	3.75
Merged-chr10-67187360-2	chr10	67186863	67187863	+	847.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	1613.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	129.86	173.72	79.55	95.81	112.9	87.61	139.42	142.82	78.07
Merged-chr4-129746327-3	chr4	129745839	129746839	+	847.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4036.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	65.79	64.51	42.55	76.24	32.66	37.78	87.66	124.69	48.09
Merged-chrX-48429293-3	chrX	48428784	48429784	+	847.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	ID_B1|SINE|B4	33848.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	40.04	50.23	59.2	36.43	21.93	33.76	46.47	50.85	36.85
Merged-chr9-15306971-2	chr9	15306483	15307483	+	847.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199484)	promoter-TSS (NM_001199484)	-535.0	NM_001199484	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	64.64	67.27	34.22	67.47	67.64	61.89	81.33	74.73	27.48
Merged-chr3-116583279-3	chr3	116582770	116583770	+	847.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175413)	TTS (NM_175413)	11617.0	NR_152258	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	12.01	17.05	28.67	8.77	6.06	20.09	19.01	19.9	7.49
Merged-chr8-82914708-1	chr8	82914208	82915208	+	847.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	51352.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	2.86	7.37	0.0	12.14	7.93	19.29	6.34	6.19	3.12
Merged-chr2-142900569-3	chr2	142900091	142901091	+	847.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	873.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	28.6	27.65	18.5	42.51	24.26	21.7	47.53	33.6	14.36
Merged-chr6-120153050-3	chr6	120152572	120153572	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	B1_Mm|SINE|Alu	-40751.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	17.16	26.26	8.32	43.86	43.85	57.07	23.24	34.93	18.11
Merged-chr6-136658762-3	chr6	136658238	136659238	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	RSINE1|SINE|B4	3155.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	218.52	252.05	155.39	135.62	114.76	69.13	230.25	254.25	91.81
Merged-chr1-6624750-3	chr1	6624239	6625239	+	847.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	MTD|LTR|ERVL-MaLR	-105312.0	NR_045189	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	14.3	13.36	6.47	4.05	9.33	9.65	11.62	11.5	3.75
Merged-chr19-12806413-1	chr19	12805913	12806913	+	847.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 2 of 8)	intron (NM_134152, intron 2 of 8)	7834.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	69.22	58.52	38.85	76.24	53.65	49.03	55.98	30.51	19.36
Merged-chr18-83713966-3	chr18	83713446	83714446	+	847.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	372616.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	24.03	23.5	20.35	20.92	23.79	25.72	3.17	7.07	5.0
Merged-chr5-101995638-2	chr5	101995143	101996143	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	74278.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	39.47	35.02	16.65	16.19	19.59	21.7	51.75	49.52	25.61
Merged-chr1-74390772-2	chr1	74390276	74391276	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153088)	promoter-TSS (NM_153088)	-833.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	42.9	42.39	28.67	39.81	17.73	28.94	31.69	32.72	28.1
Merged-chr4-12557285-1	chr4	12556785	12557785	+	847.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-349552.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.15	3.23	1.85	4.05	1.87	4.02	0.0	0.44	6.25
Merged-chr4-47349908-3	chr4	47349411	47350411	+	847.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3311.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	20.02	17.05	21.27	15.52	16.33	23.31	24.29	16.8	7.49
Merged-chr3-95674929-3	chr3	95674493	95675493	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	12924.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	174.48	218.87	163.72	207.14	169.34	220.24	261.93	431.11	179.24
Merged-chr4-19673192-3	chr4	19672700	19673700	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177327, exon 4 of 25)	exon (NM_177327, exon 4 of 25)	35804.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	37.18	56.22	27.75	60.05	65.78	59.48	41.19	33.6	23.73
Merged-chr8-119837897-4	chr8	119837346	119838346	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	2733.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	94.39	59.44	38.85	84.34	70.44	69.93	57.03	86.66	26.85
Merged-chr10-62449663-3	chr10	62449172	62450172	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	66.0	NM_001359806	338359.0	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	314.06	319.78	190.54	309.02	337.29	249.98	308.41	299.35	147.39
Merged-chr7-19577658-3	chr7	19577078	19578078	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022409, exon 1 of 3)	exon (NM_022409, exon 1 of 3)	291.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	6.29	6.45	12.95	3.37	7.93	6.43	10.56	3.98	6.25
Merged-chr19-17361396-3	chr19	17360911	17361911	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	MTD|LTR|ERVL-MaLR	-4744.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	133.29	163.12	89.72	105.93	91.44	87.61	27.46	38.03	32.48
Merged-chr11-44425885-1	chr11	44425385	44426385	+	847.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25822.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.43	5.99	4.62	1.35	0.93	4.82	8.45	7.96	5.0
Merged-chr11-81954553-3	chr11	81954022	81955022	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	13874.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	8.01	5.53	1.85	16.19	2.33	0.8	8.45	3.54	1.87
Merged-chr7-116307548-3	chr7	116307056	116308056	+	847.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	CpG	820.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	10.87	3.23	1.85	5.4	3.27	4.02	6.34	2.65	2.5
Merged-chr2-29465969-1	chr2	29465469	29466469	+	847.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290489, intron 2 of 6)	L2a|LINE|L2	9325.0	NR_105753	102465170.0		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	5.72	7.37	9.25	3.37	10.73	17.68	4.22	3.98	11.24
Merged-chr7-120984663-2	chr7	120984151	120985151	+	847.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	2142.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	10.87	9.68	14.8	38.46	27.52	20.09	24.29	25.65	13.12
Merged-chr13-91640413-3	chr13	91639906	91640906	+	847.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 4 of 15)	intron (NM_001360776, intron 4 of 15)	-101115.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	20.59	19.81	22.2	68.15	44.32	20.9	17.96	13.71	7.49
Merged-chr16-20538131-3	chr16	20537675	20538675	+	847.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302970, intron 2 of 10)	intron (NM_001302970, intron 2 of 10)	2695.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	43.48	32.72	51.8	33.74	38.25	49.03	36.97	44.66	52.46
Merged-chr11-100725094-3	chr11	100724592	100725592	+	847.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	11242.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	130.43	130.4	85.1	112.68	80.24	77.97	138.36	119.39	73.07
Merged-chr17-5220654-3	chr17	5220144	5221144	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	198123.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	17.16	23.96	24.97	38.46	29.86	35.37	39.08	43.33	25.61
Merged-chr9-65598949-3	chr9	65598443	65599443	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(G)n|Simple_repeat|Simple_repeat	11783.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	11.44	12.9	12.02	14.17	11.66	12.06	20.07	14.59	9.37
Merged-chr9-111035849-3	chr9	111035351	111036351	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	16559.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	29.17	26.26	20.35	34.41	17.26	27.33	36.97	17.69	21.23
Merged-chr1-164586718-3	chr1	164586213	164587213	+	847.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83406.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	24.6	30.87	34.22	29.01	33.59	53.05	34.85	24.76	28.73
Merged-chr9-107312978-3	chr9	107312471	107313471	+	847.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16312.0	NM_001317354	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	20.02	11.98	9.25	25.64	20.99	16.08	113.01	97.72	38.1
Merged-chr6-15792979-3	chr6	15792470	15793470	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	72309.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	41.19	46.08	40.7	14.84	17.73	11.25	31.69	24.32	14.99
Merged-chr6-42693077-3	chr6	42692567	42693567	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029930)	promoter-TSS (NM_029930)	33.0	NM_029930	77574.0	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	17.73	11.98	4.62	34.41	26.12	32.96	4.22	22.11	2.5
Merged-chr6-5496383-3	chr6	5495930	5496930	+	847.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013743)	promoter-TSS (NM_013743)	-152.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	17.16	11.98	4.62	18.89	19.13	24.92	6.34	1.77	5.0
Merged-chr1-194986006-3	chr1	194985518	194986518	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-9059.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	12.59	17.51	11.1	18.22	17.73	28.13	19.01	10.17	9.37
Merged-chr2-112197058-3	chr2	112196564	112197564	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	41166.0	NM_001011802	258022.0	Mm.377330	NM_001011802	ENSMUSG00000049758	Olfr1318	MOR245-16	olfactory receptor 1318	protein-coding	2.29	5.99	0.0	1.35	0.0	0.8	3.17	3.54	1.25
Merged-chr9-114748136-3	chr9	114747596	114748596	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	16893.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	25.74	28.11	23.12	18.89	7.0	16.88	73.93	52.18	41.84
Merged-chr1-162550040-3	chr1	162549539	162550539	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1694.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	4.0	5.99	1.85	12.14	8.86	6.43	10.56	8.84	1.25
Merged-chr15-86182047-3	chr15	86181579	86182579	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-3649.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	83.52	53.45	66.6	91.76	49.92	53.05	87.66	68.54	42.47
Merged-chr15-38247313-3	chr15	38246811	38247811	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28108.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	12.59	7.37	3.7	4.72	0.47	4.82	7.39	2.21	3.75
Merged-chr8-105553041-3	chr8	105552548	105553548	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	13016.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	10.87	14.28	22.2	13.49	10.26	13.66	9.51	9.73	17.49
Merged-chr2-25592023-3	chr2	25591523	25592523	+	847.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024616, intron 7 of 14)	intron (NM_001024616, intron 7 of 14)	-11924.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	9.72	8.29	12.95	8.1	11.66	16.88	8.45	12.38	20.61
Merged-chr7-13046326-3	chr7	13045829	13046829	+	847.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290453, intron 5 of 6)	intron (NM_001290453, intron 5 of 6)	-8054.0	NM_001168469	22192.0	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	5.15	7.83	5.55	7.42	6.06	1.61	4.22	2.21	3.75
Merged-chr3-61393174-3	chr3	61392651	61393651	+	847.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	28644.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	14.87	17.51	24.05	24.96	14.46	33.76	19.01	4.42	8.12
Merged-chr1-80641988-3	chr1	80641469	80642469	+	847.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23383.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	49.2	56.68	37.0	48.58	30.79	25.72	71.82	83.13	38.72
Merged-chr2-163698221-1	chr2	163697721	163698721	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	4184.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	17.16	13.36	13.87	14.84	10.26	20.09	22.18	5.31	6.87
Merged-chr12-9052253-2	chr12	9051755	9052755	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22258.0	NM_029321	75516.0	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	3.43	1.84	7.4	4.72	0.47	3.22	1.06	3.98	1.25
Merged-chr6-120956448-2	chr6	120955964	120956964	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 27 of 31)	intron (NM_001270475, intron 27 of 31)	-2380.0	NR_138099	215458.0	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	38.33	49.3	32.37	35.09	27.52	30.54	44.36	42.89	9.37
Merged-chr2-172477972-1	chr2	172477472	172478472	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5418.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	2.29	1.84	2.77	4.72	5.13	8.04	2.11	1.77	6.25
Merged-chr8-7954189-2	chr8	7953709	7954709	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	706564.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.14	3.23	0.0	0.67	0.93	0.0	3.17	2.21	1.87
Merged-chr1-183804417-2	chr1	183803912	183804912	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	55435.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	34.32	22.12	16.65	35.76	17.26	9.65	41.19	26.09	9.99
Merged-chr14-122638352-2	chr14	122637847	122638847	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	104019.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	14.3	16.59	16.65	16.19	18.19	18.49	30.63	21.67	10.62
Merged-chr11-48813293-1	chr11	48812793	48813793	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145377, intron 1 of 5)	intron (NM_145377, intron 1 of 5)	4098.0	NM_145377	211007.0	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	26.89	19.81	52.72	29.01	26.59	49.03	36.97	30.07	32.48
Merged-chr4-86541785-2	chr4	86541281	86542281	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	16522.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.43	3.69	1.85	2.02	0.93	0.0	1.06	2.65	0.0
Merged-chr13-47277844-1	chr13	47277344	47278344	+	847.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83841.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	12.59	22.58	11.1	21.59	15.86	8.04	6.34	7.52	3.75
Merged-chr1-166442238-2	chr1	166441740	166442740	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13248.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	5.15	8.75	7.4	6.07	7.46	3.22	14.79	11.05	9.99
Merged-chr16-97995886-2	chr16	97995386	97996386	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1429.0	NM_001362093	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	31.46	49.76	31.45	16.19	21.93	50.64	38.02	45.99	31.85
Merged-chr16-3929737-2	chr16	3929235	3930235	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029738, intron 8 of 11)	intron (NM_029738, intron 8 of 11)	20726.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	36.61	67.74	50.87	37.11	48.05	41.8	39.08	42.01	31.85
Merged-chr11-44519364-2	chr11	44518885	44519885	+	847.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166553)	promoter-TSS (NM_001166553)	8.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	196.79	203.67	251.59	204.44	157.68	199.34	301.01	242.31	148.64
Merged-chr9-41168824-1	chr9	41168324	41169324	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-10762.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	6.29	12.44	5.55	8.1	7.46	16.88	5.28	5.31	6.25
Merged-chr13-9189269-1	chr13	9188769	9189769	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-87256.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	8.58	3.69	4.62	10.12	2.33	2.41	8.45	2.65	10.62
Merged-chr6-135907706-2	chr6	135907200	135908200	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 5 of 14)	intron (NM_008171, intron 5 of 14)	248787.0	NR_126088	75024.0	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	2.86	2.3	0.0	5.4	1.87	1.61	3.17	1.77	3.75
Merged-chr11-102221923-1	chr11	102221423	102222423	+	847.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284248, intron 2 of 28)	intron (NM_001284248, intron 2 of 28)	8227.0	NR_106179	102465892.0		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	14.3	17.51	40.7	23.62	15.86	34.56	16.9	18.13	21.23
Merged-chrX-166253368-4	chrX	166252899	166253899	+	847.480286	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	14456.0	NM_001177962	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	59.49	52.53	45.32	39.81	43.85	34.56	84.49	89.32	29.98
Merged-chr8-10835793-3	chr8	10835286	10836286	+	847.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46668.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	57.78	55.29	31.45	83.66	32.66	25.72	23.24	21.67	6.87
Merged-chrX-162915893-3	chrX	162915395	162916395	+	847.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358398, intron 4 of 18)	intron (NM_001358398, intron 4 of 18)	13724.0	NR_033143	55936.0	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	1.14	1.84	1.85	2.7	0.47	3.22	1.06	0.44	0.0
Merged-chr5-151187167-2	chr5	151186675	151187675	+	847.4166869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	3018.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.57	5.07	3.7	5.4	10.26	8.04	13.73	9.29	5.62
Merged-chrX-134602051-2	chrX	134601562	134602562	+	847.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313717, intron 1 of 2)	intron (NM_001313717, intron 1 of 2)	883.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	145.3	141.92	72.15	120.77	157.68	57.87	109.84	139.28	34.35
Merged-chr18-69403666-2	chr18	69403149	69404149	+	847.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	57489.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	8.58	13.82	6.47	34.41	31.26	17.68	6.34	4.86	3.75
Merged-chr6-136861226-1	chr6	136860726	136861726	+	847.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3626.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	2.86	3.69	0.0	2.02	1.4	4.82	5.28	1.33	1.25
Merged-chr1-87634467-3	chr1	87634054	87635054	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	14242.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	52.63	37.78	64.75	44.53	48.05	63.5	48.58	58.81	37.47
Merged-chr8-14643231-3	chr8	14642722	14643722	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	MTE2a|LTR|ERVL-MaLR	-245314.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	15.45	5.53	0.0	16.19	6.53	0.8	23.24	11.05	11.24
Merged-chr19-9976378-3	chr19	9975875	9976875	+	847.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4225.0	NR_073181	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	64.07	58.98	46.25	87.71	65.78	40.99	68.65	55.27	28.73
Merged-chr10-96620084-5	chr10	96619567	96620567	+	847.33905	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	3066.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	95.53	119.34	56.42	90.41	66.71	75.56	121.46	126.46	56.83
Merged-chr9-21003475-2	chr9	21002975	21003975	+	847.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357899, intron 3 of 8)	intron (NM_001357899, intron 3 of 8)	738.0	NM_001357899	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	114.41	96.76	94.35	84.34	92.84	111.73	90.83	82.69	63.7
Merged-chr1-24698143-1	chr1	24697643	24698643	+	847.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	L1M4|LINE|L1	19225.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	38.9	47.46	46.25	73.54	68.11	89.22	53.87	42.89	28.73
Merged-chr2-153791610-3	chr2	153791112	153792112	+	847.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036629, intron 5 of 7)	intron (NR_036629, intron 5 of 7)	10733.0	NR_036629	100504221.0	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	10.3	4.15	1.85	9.45	5.13	8.84	3.17	4.42	2.5
Merged-chr3-107771176-3	chr3	107770673	107771673	+	847.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10704.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	14.3	6.45	9.25	12.82	5.13	0.8	7.39	4.86	2.5
Merged-chr2-119300329-3	chr2	119299808	119300808	+	847.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11566.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	6.86	2.76	5.55	10.8	3.73	8.84	11.62	2.65	2.5
Merged-chr1-132054613-3	chr1	132054130	132055130	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114662, intron 3 of 9)	B3|SINE|B2	13432.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	5.72	5.07	1.85	5.4	0.93	0.0	0.0	1.77	1.25
Merged-chr16-45024106-3	chr16	45023603	45024603	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69908.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	1.14	2.76	0.0	6.07	4.2	0.0	1.06	5.31	3.12
Merged-chr2-124928529-3	chr2	124928023	124929023	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139604.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	109.26	103.22	54.57	125.5	137.15	71.54	77.1	68.98	41.84
Merged-chr9-110982805-3	chr9	110982320	110983320	+	847.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028838, exon 9 of 9)	3' UTR (NM_028838, exon 9 of 9)	-6679.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	10.3	15.67	3.7	18.22	23.79	12.86	9.51	4.42	3.75
Merged-chr2-68436414-3	chr2	68435915	68436915	+	847.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	35566.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	21.74	13.36	11.1	33.06	19.13	19.29	35.91	20.78	9.37
Merged-chr1-170545556-2	chr1	170545056	170546056	+	847.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	L1MC4|LINE|L1	11554.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.72	2.3	0.0	8.1	7.93	14.47	3.17	3.54	1.25
Merged-chr13-20184513-2	chr13	20184010	20185010	+	847.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94003.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	42.9	62.67	44.4	49.25	39.65	42.6	42.25	48.2	38.72
Merged-chr3-81933004-3	chr3	81932540	81933540	+	847.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	439.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	144.16	191.23	115.62	153.84	190.8	155.93	199.62	233.02	111.17
Merged-chr6-31314194-3	chr6	31313700	31314700	+	847.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	84573.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	6.29	4.61	7.4	17.54	10.73	13.66	16.9	13.27	6.25
Merged-chr19-43898700-3	chr19	43898204	43899204	+	847.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028029, intron 4 of 15)	intron (NM_028029, intron 4 of 15)	-18936.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	7.44	6.45	7.4	14.17	9.8	9.65	9.51	8.84	2.5
Merged-chr10-4601260-3	chr10	4600758	4601758	+	847.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10731.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	68.07	44.7	49.95	71.52	31.26	42.6	43.3	23.88	35.6
Merged-chr5-105595362-2	chr5	105594853	105595853	+	847.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	75882.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	148.16	144.69	91.57	151.81	125.02	79.58	140.47	163.6	71.82
Merged-chr3-89157194-3	chr3	89156709	89157709	+	847.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008227, intron 1 of 7)	RSINE1|SINE|B4	2948.0	NM_008227	15168.0	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	3.43	1.38	0.0	8.77	3.27	0.0	3.17	0.88	3.75
Merged-chr19-37435458-3	chr19	37434983	37435983	+	847.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008245, intron 1 of 3)	CpG	642.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	109.26	105.98	140.59	87.71	103.56	161.56	101.39	107.0	91.81
Merged-chrY-1163219-3	chrY	1162720	1163720	+	847.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 14 of 26)	Lx8b|LINE|L1	82539.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	13.16	10.6	5.55	12.14	5.6	20.9	12.67	13.71	24.98
Merged-chr19-12558371-3	chr19	12557870	12558870	+	847.072205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-15140.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	18.31	18.89	24.05	15.52	15.39	20.09	21.12	23.88	26.23
Merged-chr11-101417379-3	chr11	101416897	101417897	+	847.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144829)	promoter-TSS (NM_144829)	36.0	NM_144829	69684.0	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	20.02	29.95	29.6	24.29	25.19	31.35	28.52	25.2	11.24
Merged-chr5-140616129-6	chr5	140615596	140616596	+	847.013916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008494)	TTS (NM_008494)	8755.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	154.45	144.69	147.99	155.19	121.76	149.5	165.82	160.51	103.67
Merged-chr3-90373611-2	chr3	90373124	90374124	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16314.0	NM_001316688	26568.0	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	3.43	1.84	1.85	1.35	3.27	0.8	2.11	3.1	1.25
Merged-chr2-123887906-1	chr2	123887406	123888406	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-202063.0	NM_001290997	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.44	3.69	3.7	4.72	9.33	11.25	5.28	8.4	3.12
Merged-chr2-101192965-1	chr2	101192465	101193465	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-431783.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	4.0	4.15	3.7	11.47	4.2	6.43	0.0	2.21	2.5
Merged-chr4-86421575-1	chr4	86421075	86422075	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029967, intron 25 of 27)	Lx8|LINE|L1	136728.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	5.72	3.23	16.65	7.42	4.2	4.82	10.56	4.86	13.74
Merged-chr1-106199953-3	chr1	106199435	106200435	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	28066.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	16.59	16.13	16.65	22.94	17.73	15.27	12.67	17.24	5.0
Merged-chr13-43164360-1	chr13	43163860	43164860	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252639, intron 4 of 7)	intron (NM_001252639, intron 4 of 7)	7141.0	NM_001252639	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	13.16	14.28	7.4	14.84	16.79	16.08	0.0	0.0	2.5
Merged-chr5-38470080-2	chr5	38469639	38470639	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 3 of 10)	intron (NM_145559, intron 3 of 10)	10167.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	2.86	0.92	1.85	2.7	0.0	3.22	2.11	2.21	3.75
Merged-chr15-25796551-1	chr15	25796051	25797051	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353142, intron 9 of 20)	B3A|SINE|B2	22538.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.29	3.69	0.92	2.02	0.93	0.0	5.28	1.77	2.5
Merged-chr1-80661964-3	chr1	80661522	80662522	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	3330.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	98.39	127.18	83.25	97.16	94.7	86.01	123.57	122.92	72.45
Merged-chr3-136896487-1	chr3	136895987	136896987	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 8 of 13)	intron (NM_008913, intron 8 of 13)	226421.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	3.43	2.3	9.25	7.42	6.53	10.45	12.67	2.65	13.74
Merged-chr9-62908213-1	chr9	62907713	62908713	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 7 of 13)	intron (NM_019663, intron 7 of 13)	-46189.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	8.01	6.91	8.32	14.17	7.0	12.86	7.39	5.31	1.87
Merged-chr1-131394701-1	chr1	131394201	131395201	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-115138.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	25.74	18.89	21.27	33.74	14.46	22.51	27.46	27.86	31.85
Merged-chr5-130254469-3	chr5	130253972	130254972	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023248, intron 1 of 4)	intron (NM_023248, intron 1 of 4)	1058.0	NM_023248	66711.0	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	SBDS ribosome maturation factor	protein-coding	148.16	164.5	79.55	111.33	128.76	92.44	123.57	123.36	89.31
Merged-chr7-109170623-3	chr7	109170123	109171123	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302206)	promoter-TSS (NM_001302206)	-104.0	NM_057173	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.58	4.61	0.0	1.35	2.33	4.82	0.0	0.88	1.25
Merged-chr4-149836249-2	chr4	149835755	149836755	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-61988.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.43	3.23	5.55	3.37	2.8	4.02	8.45	3.54	8.74
Merged-chr16-33902093-3	chr16	33901599	33902599	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 7 of 14)	intron (NM_001145884, intron 7 of 14)	64939.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	30.32	36.86	49.02	45.88	43.39	41.8	61.26	38.91	31.23
Merged-chr4-52429624-1	chr4	52429124	52430124	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045175)	TTS (NR_045175)	9340.0	NR_045175	72648.0	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	6.29	6.91	5.55	6.75	2.8	8.04	1.06	5.75	4.37
Merged-chr9-52082562-1	chr9	52082062	52083062	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001104616, intron 12 of 13)	intron (NM_001104616, intron 12 of 13)	-33061.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	6.86	16.13	18.5	13.49	7.0	17.68	7.39	8.4	9.99
Merged-chr16-25052602-1	chr16	25052102	25053102	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7037.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	49.2	41.01	39.77	74.22	58.31	65.11	58.09	50.41	28.1
Merged-chr9-84569744-1	chr9	84569244	84570244	+	847.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-204654.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	2.86	1.84	0.0	0.67	2.33	6.43	7.39	8.4	5.0
Merged-chr7-34235053-1	chr7	34234553	34235553	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-4717.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	19.45	22.12	35.15	21.59	23.79	20.9	50.7	33.16	19.36
Merged-chr8-109705908-1	chr8	109705408	109706408	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029468)	promoter-TSS (NM_029468)	-111.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	89.24	82.94	106.37	126.17	93.77	127.0	105.62	66.77	54.96
Merged-chr7-4647473-3	chr7	4646980	4647980	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	11470.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	22.88	22.58	20.35	18.89	9.8	0.8	12.67	7.52	8.74
Merged-chr17-13746543-1	chr17	13746043	13747043	+	847.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-13998.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.72	2.3	0.92	1.35	2.33	2.41	1.06	1.77	1.25
Merged-chr8-79384829-2	chr8	79384331	79385331	+	847.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14637.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	8.01	7.37	8.32	14.17	6.06	1.61	14.79	6.63	7.49
Merged-chr15-88868023-3	chr15	88867531	88868531	+	846.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	5837.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	22.88	10.6	12.95	16.19	12.13	11.25	9.51	1.33	2.5
Merged-chr1-60097641-3	chr1	60097106	60098106	+	846.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139150)	promoter-TSS (NM_139150)	301.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	35.47	47.46	25.9	56.68	66.71	55.46	73.93	68.09	18.74
Merged-chr7-80144010-3	chr7	80143522	80144522	+	846.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28672.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	57.78	63.59	52.72	57.35	52.25	46.62	43.3	63.23	29.98
Merged-chr3-81996149-2	chr3	81995644	81996644	+	846.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-778.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	6.29	3.23	0.0	6.75	3.27	0.0	1.06	2.21	0.0
Merged-chr2-26188753-3	chr2	26188256	26189256	+	846.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	17819.0	NM_001039653	16871.0	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	1.72	3.23	3.7	6.07	3.73	8.04	2.11	0.0	1.25
Merged-chr13-96106620-2	chr13	96106118	96107118	+	846.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	25959.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	4.0	2.76	9.25	3.37	3.73	4.02	14.79	14.15	15.61
Merged-chr5-138998166-3	chr5	138997665	138998665	+	846.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3212.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	120.13	49.76	22.2	127.52	52.25	28.94	78.16	66.33	31.85
Merged-chr4-123957396-3	chr4	123956905	123957905	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39972.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	8.01	3.23	2.77	7.42	2.8	6.43	2.11	1.33	7.49
Merged-chr10-80323051-3	chr10	80322539	80323539	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008793, exon 12 of 15)	exon (NM_008793, exon 12 of 15)	-2491.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	56.63	21.2	31.45	53.98	40.12	50.64	50.7	44.66	12.49
Merged-chr2-84705614-3	chr2	84705129	84706129	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144887, intron 2 of 11)	intron (NM_144887, intron 2 of 11)	9535.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	6.86	4.61	6.47	9.45	6.06	4.02	3.17	3.54	5.0
Merged-chr11-102317313-3	chr11	102316827	102317827	+	846.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044383)	promoter-TSS (NM_001044383)	-40.0	NM_001044383	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	189.92	141.0	213.66	137.64	78.84	121.37	167.93	102.58	113.66
Merged-chr13-51350997-3	chr13	51350508	51351508	+	846.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57610.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	9.72	2.3	3.7	4.05	3.73	7.23	5.28	1.77	3.12
Merged-chr6-53968651-3	chr6	53968106	53969106	+	846.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027749, intron 2 of 12)	intron (NM_027749, intron 2 of 12)	10067.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	5.72	4.15	12.95	8.1	5.13	4.02	6.34	2.65	3.75
Merged-chr15-103313610-2	chr15	103313127	103314127	+	846.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013866)	TTS (NM_013866)	-3189.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.29	5.99	8.32	7.42	6.53	3.22	7.39	1.77	16.24
Merged-chr15-55563910-3	chr15	55563413	55564413	+	846.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168250, intron 4 of 16)	intron (NM_001168250, intron 4 of 16)	6505.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	9.15	8.29	3.7	8.77	5.13	6.43	7.39	5.31	12.49
Merged-chr8-108780354-3	chr8	108779841	108780841	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	65697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	34.32	41.01	38.85	39.13	37.79	39.39	11.62	2.21	1.25
Merged-chr2-163951916-3	chr2	163951406	163952406	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33223.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	1.72	4.61	3.7	2.02	2.33	1.61	1.06	0.44	1.87
Merged-chr13-45255481-3	chr13	45254964	45255964	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134278.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	14.87	9.22	3.7	14.84	8.86	11.25	7.39	5.31	3.75
Merged-chr18-46770486-3	chr18	46769984	46770984	+	846.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009681, intron 3 of 5)	intron (NM_009681, intron 3 of 5)	28608.0	NM_009681	11777.0	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	5.72	6.45	3.7	11.47	10.26	6.43	5.28	5.75	5.0
Merged-chr3-149349429-3	chr3	149348944	149349944	+	846.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74707.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.0	4.15	0.92	10.12	4.2	1.61	4.22	0.44	6.25
Merged-chr10-121366593-2	chr10	121366082	121367082	+	846.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	intron (NM_029364, intron 1 of 13)	1492.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	192.78	135.93	129.49	161.26	141.82	98.06	247.15	290.5	123.03
Merged-chr19-32887435-2	chr19	32886931	32887931	+	846.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129854.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	10.3	8.75	6.47	10.8	8.4	12.86	5.28	6.19	7.49
Merged-chr3-109026784-3	chr3	109026294	109027294	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	813.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	72.08	82.48	61.97	66.12	52.25	53.05	98.23	115.85	58.71
Merged-chr1-72236517-3	chr1	72236027	72237027	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7466.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	17.73	17.05	18.5	16.87	3.73	16.88	11.62	9.73	16.24
Merged-chr5-34636661-3	chr5	34636176	34637176	+	846.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356979, exon 2 of 13)	exon (NM_001356979, exon 2 of 13)	536.0	NM_001356978	68294.0	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	34.32	23.04	49.02	35.76	27.06	40.99	55.98	42.89	13.12
Merged-chr18-60808500-7	chr18	60808081	60809081	+	846.719055	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 3 of 8)	intron (NM_001042605, intron 3 of 8)	-3495.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	52.06	47.0	47.17	20.24	14.93	15.27	32.74	39.8	41.84
Merged-chr6-122600359-3	chr6	122599876	122600876	+	846.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 1 of 7)	MRLTR33|LTR|ERVK	2068.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	127.57	162.66	88.8	106.61	85.37	86.01	186.94	241.87	147.39
Merged-chr2-170343926-4	chr2	170343415	170344415	+	846.7083130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12446.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	165.32	162.66	138.74	159.23	178.21	110.92	248.2	244.96	98.68
Merged-chr10-25117779-1	chr10	25117279	25118279	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82391.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.15	5.07	7.4	2.02	1.87	5.63	5.28	1.33	6.25
Merged-chr4-45528262-1	chr4	45527762	45528762	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2566.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	17.16	12.9	19.42	17.54	13.06	13.66	19.01	21.67	12.49
Merged-chr1-174236195-3	chr1	174235699	174236699	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011465, intron 42 of 51)	intron (NM_011465, intron 42 of 51)	14777.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	9.72	6.45	14.8	13.49	6.53	2.41	5.28	11.05	3.75
Merged-chr18-5941434-3	chr18	5940964	5941964	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194634.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	3.43	5.53	3.7	12.82	11.66	6.43	7.39	5.31	2.5
Merged-chr7-84196421-1	chr7	84195921	84196921	+	846.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44528.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	4.58	6.91	9.25	11.47	1.4	1.61	25.35	7.07	9.37
Merged-chr19-55233767-3	chr19	55233284	55234284	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081076, intron 3 of 20)	intron (NM_001081076, intron 3 of 20)	7452.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	18.88	14.28	11.1	18.89	17.26	16.08	34.85	20.34	13.12
Merged-chr8-126881976-3	chr8	126881498	126882498	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	32978.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	38.9	18.89	20.35	64.1	20.99	21.7	52.81	32.72	18.11
Merged-chr11-3127530-3	chr11	3127024	3128024	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003517, exon 3 of 7)	non-coding (NR_003517, exon 3 of 7)	3503.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	56.63	51.61	54.57	56.0	65.31	111.73	17.96	7.07	69.95
Merged-chr10-96188298-2	chr10	96187812	96188812	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37895.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	9.72	15.67	14.8	13.49	17.26	21.7	12.67	11.5	23.73
Merged-chr18-38928887-1	chr18	38928387	38929387	+	846.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-10188.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	14.87	14.28	13.87	65.45	36.39	17.68	34.85	16.36	6.25
Merged-chr17-6749419-4	chr17	6748941	6749941	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 6 of 12)	intron (NM_009510, intron 6 of 12)	33339.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	12.59	5.99	14.8	10.8	8.86	9.65	15.84	5.31	4.37
Merged-chr13-92680247-3	chr13	92679740	92680740	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	69102.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	8.01	9.68	4.62	7.42	11.66	12.86	9.51	13.27	10.62
Merged-chr6-88500282-3	chr6	88499764	88500764	+	846.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	18536.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	9.72	5.07	9.25	17.54	10.73	14.47	15.84	12.38	5.0
Merged-chr17-37051921-2	chr17	37051420	37052420	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019439, intron 6 of 22)	intron (NM_019439, intron 6 of 22)	5954.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	9.72	19.35	9.25	2.7	7.0	4.82	2.11	0.44	0.0
Merged-chr16-50061615-2	chr16	50061094	50062094	+	846.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	11258.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	10.3	5.99	3.7	5.4	4.2	5.63	6.34	1.77	5.62
Merged-chr3-103841127-2	chr3	103840619	103841619	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142960, intron 3 of 3)	RLTR45|LTR|ERVK	8423.0	NM_001142960	229672.0	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	33.75	30.41	41.62	10.12	9.33	22.51	28.52	12.38	16.24
Merged-chr11-109480593-2	chr11	109480052	109481052	+	846.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028710, intron 1 of 13)	intron (NM_028710, intron 1 of 13)	-5340.0	NM_001361975	74008.0	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872|ASG	arylsulfatase G	protein-coding	38.9	28.11	20.35	41.16	25.19	22.51	58.09	30.07	16.24
Merged-chr1-180312454-3	chr1	180311902	180312902	+	846.652344	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18074.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	211.66	176.94	90.65	101.21	73.71	69.93	95.06	114.08	80.56
Merged-chr13-12542270-3	chr13	12541788	12542788	+	846.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21838.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	2.29	2.3	7.4	5.4	3.73	4.82	4.22	0.88	1.25
Merged-chr7-75633128-2	chr7	75632642	75633642	+	846.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	Lx9|LINE|L1	177608.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	15.45	15.67	7.4	21.59	13.53	6.43	2.11	4.86	8.74
Merged-chr15-80458206-2	chr15	80457693	80458693	+	846.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	-19590.0	NR_155274	102633578.0	Mm.397484	NR_155274	ENSMUSG00000115888	Gm31369	-	predicted gene, 31369	ncRNA	2.29	4.61	3.7	6.75	2.8	4.02	13.73	3.1	12.49
Merged-chr15-6707689-3	chr15	6707182	6708182	+	846.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030168)	promoter-TSS (NM_030168)	-699.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	34.9	28.11	19.42	35.76	33.59	36.97	22.18	18.13	9.37
Merged-chr6-30403674-3	chr6	30403167	30404167	+	846.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	1812.0	NM_001311087	76788.0	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	6.86	15.67	5.55	12.82	10.26	11.25	19.01	18.13	9.99
Merged-chr2-27027513-2	chr2	27026998	27027998	+	846.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 1 of 8)	intron (NM_001177627, intron 1 of 8)	500.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	25.17	17.97	16.65	49.93	18.19	32.15	64.43	55.71	37.47
Merged-chr4-66792346-1	chr4	66791846	66792846	+	846.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35205.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	34.32	37.78	32.37	18.89	18.66	22.51	12.67	7.96	10.62
Merged-chr8-108847695-2	chr8	108847181	108848181	+	846.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-89179.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	20.02	11.06	19.42	14.84	13.53	17.68	33.8	21.67	24.36
Merged-chr2-167754864-2	chr2	167754358	167755358	+	846.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63681.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	147.02	114.74	68.45	184.2	101.7	117.35	129.91	101.26	45.59
Merged-chr8-26964101-3	chr8	26963590	26964590	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-13246.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	62.93	65.43	41.62	76.24	66.24	86.81	62.31	47.31	19.98
Merged-chr15-53344410-3	chr15	53343866	53344866	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	1817.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	88.1	56.22	35.15	58.03	31.26	20.9	31.69	22.55	10.62
Merged-chr1-184733444-3	chr1	184732925	184733925	+	846.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008250)	promoter-TSS (NM_008250)	-932.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	93.82	88.01	42.55	95.14	78.84	75.56	48.58	72.52	48.09
Merged-chr9-40616581-3	chr9	40616085	40617085	+	846.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69379.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	26.89	17.05	1.85	16.19	12.6	5.63	3.17	2.65	1.87
Merged-chr12-111914991-3	chr12	111914495	111915495	+	846.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6940.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	16.02	33.18	21.27	29.01	25.19	25.72	27.46	30.51	12.49
Merged-chr6-108464988-1	chr6	108464488	108465488	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-24755.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	21.17	12.44	24.05	16.87	10.73	13.66	21.12	24.32	1.25
Merged-chr9-47386314-3	chr9	47385819	47386819	+	846.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143851.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.58	2.76	9.25	5.4	2.33	1.61	2.11	0.88	7.49
Merged-chr7-75828133-2	chr7	75827634	75828634	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20204.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	5.15	3.69	0.0	4.72	1.87	1.61	1.06	2.65	11.24
Merged-chr11-74371875-1	chr11	74371375	74372375	+	846.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7204.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	2.86	1.38	2.77	4.05	4.2	1.61	0.0	1.77	5.0
Merged-chr7-102233066-3	chr7	102232557	102233557	+	846.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	10029.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	31.46	11.06	25.9	17.54	7.93	22.51	20.07	8.84	9.99
Merged-chr3-78312907-3	chr3	78312417	78313417	+	846.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	831970.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	8.01	5.99	5.55	18.22	11.2	11.25	5.28	14.15	8.12
Merged-chr15-4042539-3	chr15	4041954	4042954	+	846.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024188, intron 3 of 16)	L2a|LINE|L2	-15048.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	18.88	18.43	34.22	14.84	13.06	14.47	19.01	17.69	15.61
Merged-chr10-20036893-5	chr10	20036354	20037354	+	846.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	102328.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	74.37	88.01	60.12	102.56	90.04	77.97	51.75	50.41	25.61
Merged-chr14-26765068-2	chr14	26764574	26765574	+	846.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-95228.0	NM_178668	211948.0	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	3.43	1.38	3.7	7.42	8.4	9.65	7.39	4.86	3.75
Merged-chr9-120049591-3	chr9	120049098	120050098	+	846.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009987, exon 2 of 2)	3' UTR (NM_009987, exon 2 of 2)	18698.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	11.44	9.68	6.47	9.45	10.73	22.51	6.34	5.75	3.12
Merged-chr11-73019563-3	chr11	73019078	73020078	+	846.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152202)	promoter-TSS (NR_152202)	570.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	19.45	13.82	4.62	20.24	27.52	25.72	23.24	18.57	16.86
Merged-chr15-97939690-2	chr15	97939193	97940193	+	846.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24536.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	7.44	1.84	23.12	10.12	5.13	4.82	1.06	3.54	7.49
Merged-chr2-120464959-2	chr2	120464462	120465462	+	846.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040608, intron 1 of 4)	intron (NR_040608, intron 1 of 4)	1369.0	NM_007601	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	14.3	11.52	12.95	18.89	14.46	26.53	16.9	9.73	8.74
Merged-chr14-62342830-2	chr14	62342313	62343313	+	846.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026001, intron 1 of 10)	intron (NM_026001, intron 1 of 10)	10745.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	49.2	41.47	19.42	74.22	71.38	56.27	61.26	61.46	25.61
Merged-chr11-120057921-1	chr11	120057421	120058421	+	846.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-10776.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	18.88	13.36	5.55	4.72	1.87	3.22	16.9	19.01	5.0
Merged-chrX-155210565-3	chrX	155210079	155211079	+	846.39679	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5870.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	29.17	25.34	12.02	22.94	21.93	20.9	27.46	16.36	12.49
Merged-chr13-4650426-3	chr13	4649922	4650922	+	846.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41258.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.15	8.29	12.95	8.77	5.13	16.88	4.22	6.19	7.49
Merged-chr9-71213851-3	chr9	71213348	71214348	+	846.3666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110518, intron 2 of 3)	intron (NR_110518, intron 2 of 3)	1393.0	NR_110519	100041660.0	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	3.43	3.69	1.85	4.05	3.27	2.41	4.22	1.77	0.62
Merged-chr2-144459184-3	chr2	144458670	144459670	+	846.3428960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033459)	promoter-TSS (NR_033459)	-110.0	NR_033459	668917.0	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	Zfp133	zinc finger protein 133, pseudogene	pseudo	28.6	21.2	14.8	11.47	24.72	19.29	40.14	35.82	22.48
Merged-chr17-79175548-1	chr17	79175048	79176048	+	846.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	123642.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	2.86	2.76	7.4	1.35	1.4	3.22	8.45	7.07	5.0
Merged-chr1-175691884-1	chr1	175691384	175692384	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010098, intron 1 of 3)	intron (NM_010098, intron 1 of 3)	748.0	NM_010098	13603.0	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	12.59	6.45	12.95	24.96	16.33	33.76	16.9	8.4	6.87
Merged-chr16-17393164-1	chr16	17392664	17393664	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 1 of 54)	intron (NM_001001983, intron 1 of 54)	-12836.0	NM_023348	67474.0	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	2.29	11.98	9.25	13.49	11.66	8.04	8.45	6.63	7.49
Merged-chr11-31713809-1	chr11	31713309	31714309	+	846.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-41947.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	97.25	93.54	69.37	67.47	83.51	77.97	66.54	75.17	33.1
Merged-chr15-95801425-2	chr15	95800917	95801917	+	846.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	10574.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	19.45	12.9	12.02	97.83	51.32	63.5	64.43	72.96	26.85
Merged-chr9-41162600-3	chr9	41162093	41163093	+	846.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4531.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	27.46	29.95	28.67	22.27	28.46	40.19	50.7	61.02	55.58
Merged-chr2-118728514-3	chr2	118728026	118729026	+	846.322205	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-88.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	53.2	38.71	44.4	61.4	37.32	44.21	78.16	65.0	36.22
Merged-chr3-79809368-3	chr3	79808868	79809868	+	846.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33294.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.29	4.15	1.85	4.72	3.27	1.61	3.17	1.77	3.75
Merged-chr4-43466620-3	chr4	43466124	43467124	+	846.3110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11998.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	61.21	68.2	57.35	145.06	144.15	93.24	104.56	124.69	69.95
Merged-chr3-60408927-4	chr3	60408391	60409391	+	846.30835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63939.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	64.64	94.46	38.85	63.42	106.83	71.54	97.17	119.83	75.57
Merged-chr5-65480618-3	chr5	65480095	65481095	+	846.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	ID_B1|SINE|B4	12240.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	30.32	39.63	22.2	46.56	33.12	45.82	38.02	42.45	42.47
Merged-chr9-83540489-3	chr9	83539934	83540934	+	846.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7904.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.15	8.75	12.95	17.54	18.19	28.13	13.73	9.29	17.49
Merged-chr19-37508194-3	chr19	37507673	37508673	+	846.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42245.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	19.45	21.2	27.75	11.47	8.86	9.65	24.29	23.43	16.86
Merged-chrX-7776509-1	chrX	7776009	7777009	+	846.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	12468.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	13.73	16.59	11.1	25.64	11.66	30.54	22.18	12.82	11.24
Merged-chr18-6501485-2	chr18	6500989	6501989	+	846.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	B3|SINE|B2	-10632.0	NM_001276350	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	6.86	6.45	0.0	4.72	3.73	8.04	5.28	4.86	13.74
Merged-chr14-68582143-3	chr14	68581643	68582643	+	846.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021475)	promoter-TSS (NM_021475)	-71.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	20.59	29.49	12.02	35.76	26.12	19.29	22.18	25.65	31.23
Merged-chr18-54983276-3	chr18	54982775	54983775	+	846.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	6905.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	16.59	18.89	16.65	12.14	16.33	11.25	10.56	11.94	12.49
Merged-chr1-167554181-1	chr1	167553681	167554681	+	846.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44181.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.57	0.46	2.77	2.7	0.93	2.41	0.0	0.88	3.75
Merged-chr9-48282664-1	chr9	48282164	48283164	+	846.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58234.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	2.29	0.92	1.85	2.02	3.27	5.63	9.51	2.21	6.25
Merged-chr15-78449345-3	chr15	78448850	78449850	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19284.0	NM_001355601	71753.0	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	13.16	7.83	6.47	23.62	11.66	5.63	16.9	8.84	7.49
Merged-chr17-24152384-3	chr17	24151900	24152900	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NM_001286662	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	11.44	7.83	1.85	5.4	4.67	7.23	7.39	3.98	7.49
Merged-chr10-63347345-3	chr10	63346865	63347865	+	846.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-8330.0	NM_001159589	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	42.33	46.54	34.22	35.09	44.32	27.33	61.26	61.9	26.85
Merged-chr11-98673358-3	chr11	98672867	98673867	+	846.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021347, intron 9 of 11)	intron (NM_021347, intron 9 of 11)	9016.0	NM_021347	57911.0	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.57	0.92	0.0	3.37	1.87	1.61	1.06	1.77	3.75
Merged-chr2-181188752-3	chr2	181188233	181189233	+	846.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151465)	TTS (NR_151465)	1486.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	51.48	50.23	46.25	39.13	29.39	46.62	79.21	70.75	32.48
Merged-chr9-90055475-4	chr9	90054900	90055900	+	846.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	1133.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	236.26	282.92	137.82	199.04	229.99	160.76	283.06	361.69	137.4
Merged-chr2-31298037-2	chr2	31297536	31298536	+	846.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	52113.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	2.86	2.76	1.85	7.42	4.2	3.22	3.17	2.21	2.5
Merged-chr10-83922241-3	chr10	83921741	83922741	+	846.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	178456.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	52.06	39.63	29.6	53.3	40.12	23.31	95.06	105.68	59.33
Merged-chr5-136246077-3	chr5	136245574	136246574	+	846.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1134.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	57.78	71.88	98.05	80.29	62.98	109.32	173.21	157.85	92.43
Merged-chr8-117482475-3	chr8	117481974	117482974	+	846.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-15801.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	81.8	76.95	56.42	58.03	32.66	78.77	70.76	101.7	54.96
Merged-chr12-69473121-3	chr12	69472616	69473616	+	846.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038060, intron 2 of 4)	RSINE1|SINE|B4	2434.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	12.01	2.76	0.0	8.1	6.53	12.86	12.67	7.07	3.12
Merged-chr1-131797437-1	chr1	131796937	131797937	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178079)	promoter-TSS (NM_178079)	39.0	NM_001357478	212933.0	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	4.0	0.92	1.85	9.45	7.0	4.82	6.34	2.65	3.75
Merged-chr10-68247360-1	chr10	68246860	68247860	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	31366.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	31.46	25.8	39.77	37.11	25.66	41.8	22.18	13.27	14.99
Merged-chr11-97718055-3	chr11	97717610	97718610	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_054051, exon 10 of 10)	3' UTR (NM_054051, exon 10 of 10)	14676.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	43.48	30.41	27.75	41.83	17.26	32.96	35.91	29.63	13.74
Merged-chr13-40938584-1	chr13	40938084	40939084	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	20950.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	11.44	6.45	7.4	31.71	13.06	16.88	22.18	7.96	0.62
Merged-chr3-51339812-3	chr3	51339310	51340310	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	CpG	834.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	262.57	273.71	209.96	240.2	204.8	186.48	251.37	217.99	170.5
Merged-chr7-128059300-3	chr7	128058803	128059803	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3337.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	52.63	57.14	42.55	43.86	30.79	32.96	27.46	32.72	36.85
Merged-chr3-108382106-3	chr3	108381618	108382618	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040560, intron 2 of 2)	intron (NR_040560, intron 2 of 2)	1623.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	99.54	76.95	94.35	101.88	52.25	57.87	120.41	89.76	46.22
Merged-chr5-106679848-2	chr5	106679361	106680361	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026856, intron 1 of 6)	intron (NM_026856, intron 1 of 6)	16969.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	12.01	9.68	13.87	14.84	13.06	11.25	7.39	5.31	6.25
Merged-chr5-34370519-2	chr5	34369987	34370987	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243123, intron 1 of 20)	CpG	554.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	71.51	82.48	93.42	70.85	45.72	60.28	62.31	37.58	36.22
Merged-chr13-9642108-1	chr13	9641608	9642608	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 31 of 36)	intron (NM_001081426, intron 31 of 36)	121702.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	6.86	3.69	5.55	2.02	4.67	10.45	2.11	9.29	2.5
Merged-chr1-191070528-2	chr1	191070027	191071027	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 3 of 5)	intron (NM_198654, intron 3 of 5)	7506.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	114.98	92.16	93.42	85.69	58.31	61.09	241.87	324.99	157.38
Merged-chrX-169994182-3	chrX	169993660	169994660	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-15243.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	54.92	19.81	6.47	3.37	0.93	0.0	34.85	15.92	31.85
Merged-chr2-102682355-1	chr2	102681855	102682855	+	846.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	23666.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.72	1.38	0.92	4.05	2.8	4.02	1.06	0.88	1.25
Merged-chr10-127529011-1	chr10	127528511	127529511	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	5548.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	6.86	0.46	0.0	3.37	0.93	2.41	3.17	0.0	1.25
Merged-chr2-18996941-1	chr2	18996441	18997441	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	1180.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	31.46	52.07	35.15	14.17	27.99	24.92	32.74	17.69	22.48
Merged-chr3-144568948-2	chr3	144568467	144569467	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	1249.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	16.59	17.51	18.5	16.87	19.59	19.29	34.85	26.97	21.23
Merged-chr2-6359834-3	chr2	6359333	6360333	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 1 of 13)	MER3|DNA|hAT-Charlie	7097.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	8.01	3.23	3.7	9.45	6.06	5.63	17.96	11.5	8.12
Merged-chr11-32671640-2	chr11	32671138	32672138	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	29083.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	10.3	7.83	5.55	6.75	5.13	6.43	8.45	10.17	12.49
Merged-chr11-72260084-2	chr11	72259568	72260568	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004148, intron 4 of 11)	intron (NM_001004148, intron 4 of 11)	6536.0	NM_001004148	237831.0	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	2.29	2.3	1.85	6.07	1.87	1.61	3.17	4.86	7.49
Merged-chr12-36215300-1	chr12	36214800	36215800	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	2918.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	6.29	5.07	0.0	2.7	7.46	0.0	5.28	2.65	5.0
Merged-chr9-31248034-3	chr9	31247522	31248522	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23379.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	23.45	42.85	14.8	35.76	21.46	32.96	34.85	27.41	21.23
Merged-chr19-36921857-1	chr19	36921357	36922357	+	846.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2258.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	8.01	2.3	6.47	6.75	1.4	3.22	10.56	7.96	10.62
Merged-chr1-135699596-2	chr1	135699096	135700096	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20467.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	12.59	11.98	7.4	16.87	14.46	4.82	8.45	12.38	2.5
Merged-chr10-20769677-2	chr10	20769187	20770187	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44609.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	127.0	96.76	59.2	149.11	128.29	69.13	135.19	160.51	51.84
Merged-chr14-57537820-1	chr14	57537320	57538320	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145837, intron 2 of 2)	intron (NM_145837, intron 2 of 2)	12991.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	1.14	0.92	3.7	4.05	4.2	4.82	2.11	0.0	0.0
Merged-chr6-108531405-1	chr6	108530905	108531905	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	41662.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	60.07	33.18	43.47	78.94	38.25	40.99	72.88	41.12	23.11
Merged-chr6-91685617-1	chr6	91685117	91686117	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009320, intron 1 of 14)	intron (NM_009320, intron 1 of 14)	1550.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	80.09	66.35	58.27	89.74	82.11	78.77	105.62	73.4	66.2
Merged-chr12-91758395-1	chr12	91757895	91758895	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	intron (NM_175367, intron 1 of 6)	28041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	30.89	33.64	21.27	14.84	13.06	34.56	14.79	24.76	28.73
Merged-chr11-69059206-2	chr11	69058718	69059718	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028005)	promoter-TSS (NM_028005)	-557.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	173.9	168.65	100.82	139.67	86.3	149.5	139.42	205.61	123.66
Merged-chr18-84804619-2	chr18	84804106	84805106	+	846.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46732.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	11.44	3.23	3.7	10.12	7.0	6.43	5.28	3.1	7.49
Merged-chrX-155337901-1	chrX	155337401	155338401	+	846.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016764, intron 1 of 6)	intron (NM_016764, intron 1 of 6)	559.0	NM_016764	53381.0	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	17.16	11.06	12.95	17.54	19.59	22.51	23.24	11.94	10.62
Merged-chr1-92652695-3	chr1	92652183	92653183	+	845.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	5.72	6.91	5.55	9.45	5.6	1.61	2.11	3.54	7.49
Merged-chr19-34682742-2	chr19	34682272	34683272	+	845.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 2 of 6)	Lx7|LINE|L1	41883.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	9.72	8.75	9.25	13.49	8.4	5.63	3.17	3.1	6.25
Merged-chr2-146848142-2	chr2	146847662	146848662	+	845.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-7727.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	48.62	47.92	34.22	34.41	26.59	40.99	1.06	1.33	5.0
Merged-chr11-88993780-3	chr11	88993295	88994295	+	845.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5608.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	14.3	13.82	12.95	17.54	11.2	5.63	7.39	9.73	11.87
Merged-chr16-43381409-3	chr16	43380856	43381856	+	845.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	B1F1|SINE|Alu	38840.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	58.35	39.63	31.45	38.46	26.59	43.4	62.31	31.84	39.97
Merged-chr18-77795592-3	chr18	77795079	77796079	+	845.872986	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152167, intron 1 of 2)	intron (NR_152167, intron 1 of 2)	811.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	145.87	152.98	117.47	106.61	97.03	101.28	181.66	168.47	74.94
Merged-chr11-62575441-3	chr11	62574963	62575963	+	845.8666380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011706, intron 1 of 15)	intron (NM_011706, intron 1 of 15)	977.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	80.66	82.94	83.25	59.38	69.98	98.06	78.16	80.03	80.56
Merged-chr17-34286982-6	chr17	34286477	34287477	+	845.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	794.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	227.11	165.88	186.84	67.47	40.59	36.17	191.17	233.46	135.52
Merged-chr15-55557699-2	chr15	55557206	55558206	+	845.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026759)	promoter-TSS (NM_026759)	298.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	58.92	74.65	90.65	51.28	56.91	61.09	81.33	66.77	34.35
Merged-chr11-80302817-2	chr11	80302313	80303313	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 2 of 8)	intron (NM_139228, intron 2 of 8)	1901.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	5.15	4.61	5.55	4.05	2.33	2.41	5.28	4.86	3.12
Merged-chr16-21691843-2	chr16	21691348	21692348	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	intron (NM_001001881, intron 1 of 1)	2817.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	42.33	43.77	24.05	64.1	70.91	47.42	68.65	64.11	28.73
Merged-chr2-51981895-2	chr2	51981403	51982403	+	845.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8695.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	3.43	5.99	11.1	67.47	50.85	26.53	50.7	36.7	12.49
Merged-chr3-119933460-3	chr3	119932965	119933965	+	845.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-150077.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	8.58	5.07	1.85	7.42	12.6	8.04	12.67	10.61	8.74
Merged-chr11-46096923-3	chr11	46096417	46097417	+	845.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 4 of 22)	intron (NM_001291890, intron 4 of 22)	-5353.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	1.14	3.69	0.0	6.75	1.4	2.41	15.84	4.86	3.12
Merged-chr15-99474651-3	chr15	99474144	99475144	+	845.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029236)	promoter-TSS (NM_029236)	86.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	107.55	81.1	63.82	74.22	58.31	78.77	110.9	88.88	44.34
Merged-chr6-142748294-5	chr6	142747764	142748764	+	845.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M7|LINE|L1	-8422.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	106.97	106.9	101.74	101.21	120.36	118.96	94.0	152.55	94.93
Merged-chr2-156850684-3	chr2	156850179	156851179	+	845.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291124, intron 2 of 3)	intron (NM_001291124, intron 2 of 3)	10672.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	9.72	7.83	9.25	16.87	6.53	10.45	13.73	9.73	1.25
Merged-chr9-122257183-2	chr9	122256659	122257659	+	845.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133979, exon 9 of 13)	exon (NM_133979, exon 9 of 13)	16869.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	10.3	6.45	13.87	14.17	7.93	6.43	4.22	5.31	5.0
Merged-chr11-83687314-2	chr11	83686801	83687801	+	845.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16755.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	1.72	3.69	0.0	24.96	23.79	40.19	50.7	44.66	41.84
Merged-chr9-7603540-3	chr9	7603019	7604019	+	845.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24712.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	5.15	2.3	0.0	4.72	0.93	0.0	5.28	0.44	0.0
Merged-chr10-51595332-3	chr10	51594836	51595836	+	845.677795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4876.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	2.86	6.45	0.0	2.7	1.87	1.61	5.28	3.98	2.5
Merged-chr6-127582929-1	chr6	127582429	127583429	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4954.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	9.15	4.61	9.25	6.07	5.6	6.43	9.51	7.07	8.74
Merged-chr17-8920536-1	chr17	8920036	8921036	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 3 of 21)	intron (NM_001347321, intron 3 of 21)	-67797.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	2.29	3.23	1.85	5.4	1.87	5.63	1.06	0.88	5.0
Merged-chr4-117199673-1	chr4	117199173	117200173	+	845.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17049.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	4.58	3.23	1.85	157.21	138.09	60.28	1.06	5.75	4.37
Merged-chr6-88379047-3	chr6	88378534	88379534	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	67505.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	8.01	3.69	10.17	6.75	5.6	2.41	2.11	5.31	2.5
Merged-chr14-72689701-3	chr14	72689180	72690180	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	L1_Mur3|LINE|L1	20323.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	9.72	7.37	17.57	12.82	6.53	13.66	13.73	6.19	8.74
Merged-chr2-124620029-3	chr2	124619536	124620536	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	9740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	85.24	74.65	52.72	88.39	80.71	88.42	71.82	70.75	64.95
Merged-chr14-20798948-3	chr14	20798452	20799452	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4713.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	9.15	1.38	11.1	6.07	4.2	0.0	1.06	4.42	3.75
Merged-chr4-95049341-3	chr4	95048851	95049851	+	845.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010591, exon 1 of 1)	3' UTR (NM_010591, exon 1 of 1)	2871.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	28.03	25.34	6.47	19.57	7.46	2.41	16.9	6.19	5.62
Merged-chr4-32531646-2	chr4	32531150	32532150	+	845.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 2 of 4)	intron (NM_001109661, intron 2 of 4)	40012.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	12.01	5.99	8.32	14.17	11.66	15.27	4.22	8.4	6.87
Merged-chr8-75031569-3	chr8	75031058	75032058	+	845.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2128.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	26.89	34.1	30.52	35.76	27.99	27.33	36.97	47.75	19.36
Merged-chr11-75530540-3	chr11	75530042	75531042	+	845.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1152.0	NM_001199284	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	25.17	15.67	26.82	44.53	16.79	53.85	41.19	34.49	23.11
Merged-chr13-112439673-2	chr13	112439174	112440174	+	845.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24396.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	26.31	12.44	14.8	14.84	9.33	19.29	10.56	16.8	11.24
Merged-chrX-99066747-2	chrX	99066255	99067255	+	845.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_199018, exon 5 of 14)	exon (NM_199018, exon 5 of 14)	24174.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	10.3	8.29	8.32	12.82	9.33	15.27	12.67	3.54	8.12
Merged-chr8-122269575-3	chr8	122269074	122270074	+	845.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.15	2.76	1.85	19.57	11.66	6.43	9.51	3.98	5.0
Merged-chr3-154332097-3	chr3	154331583	154332583	+	845.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040387, intron 1 of 2)	intron (NR_040387, intron 1 of 2)	1262.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	4.58	4.15	10.17	8.1	4.2	4.02	8.45	4.86	6.25
Merged-chrX-12140194-3	chrX	12139710	12140710	+	845.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	CpG	20136.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	26.31	15.21	20.35	35.09	20.99	24.92	20.07	12.82	24.36
Merged-chr18-13031790-2	chr18	13031276	13032276	+	845.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24786.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.43	5.99	5.55	20.92	7.93	8.04	9.51	5.75	11.24
Merged-chr14-8114334-3	chr14	8113840	8114840	+	845.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	16129.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	31.46	27.65	16.65	31.04	35.45	30.54	57.03	38.91	26.23
Merged-chr7-31177359-3	chr7	31176850	31177850	+	845.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14992.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	2.86	3.23	3.7	9.45	0.47	0.0	7.39	5.31	3.75
Merged-chr9-45412507-3	chr9	45411997	45412997	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6420.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	3.43	3.23	7.4	4.72	4.67	3.22	6.34	3.1	0.0
Merged-chr11-58301230-3	chr11	58300754	58301754	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5815.0	NM_182996	103836.0	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	30.32	35.94	26.82	41.83	62.51	63.5	13.73	12.38	8.74
Merged-chr17-35725711-3	chr17	35725215	35726215	+	845.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21116.0	NM_007584	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	1.14	5.99	3.7	3.37	4.2	4.82	4.22	1.33	3.75
Merged-chr10-88352845-3	chr10	88352331	88353331	+	845.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	4244.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	32.04	35.02	37.92	32.39	26.59	20.9	44.36	44.66	23.73
Merged-chr1-64304269-3	chr1	64303827	64304827	+	845.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-182938.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	118.42	152.06	97.12	114.03	100.77	132.63	127.8	100.37	79.94
Merged-chr6-70881112-3	chr6	70880630	70881630	+	845.5277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 4 of 16)	intron (NM_010121, intron 4 of 16)	36615.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	5.15	9.22	3.7	7.42	2.33	8.84	1.06	2.65	2.5
Merged-chr15-34530231-3	chr15	34529739	34530739	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026340, exon 16 of 16)	exon (NM_026340, exon 16 of 16)	34928.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	30.32	36.86	31.45	64.1	56.45	37.78	14.79	21.22	13.74
Merged-chr2-127519053-1	chr2	127518553	127519553	+	845.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110989, intron 1 of 8)	intron (NR_110989, intron 1 of 8)	2339.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	1.14	0.46	0.92	1.35	1.4	4.02	4.22	3.98	0.62
Merged-chrX-7193443-1	chrX	7192943	7193943	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 3 of 13)	intron (NM_001243762, intron 3 of 13)	-4729.0	NM_016691	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	5.15	1.38	1.85	2.7	4.67	1.61	4.22	0.44	0.0
Merged-chr10-78388329-1	chr10	78387829	78388829	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20216.0	NR_105872	102465547.0		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	7.44	8.75	7.4	11.47	10.26	20.9	9.51	9.73	1.87
Merged-chr19-42152175-3	chr19	42151684	42152684	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183195)	TTS (NM_183195)	4795.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	9.72	6.91	1.85	1.35	3.27	1.61	2.11	0.0	3.12
Merged-chr9-35211808-2	chr9	35211282	35212282	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291449)	promoter-TSS (NM_001291449)	579.0	NM_026130	67398.0	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	165.32	248.82	146.14	148.44	181.94	169.6	157.37	187.04	100.55
Merged-chr1-88705318-3	chr1	88704793	88705793	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3102.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	9.72	14.28	3.7	20.24	19.59	13.66	19.01	18.57	16.86
Merged-chr5-107923040-3	chr5	107922548	107923548	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 2 of 4)	intron (NM_026062, intron 2 of 4)	22520.0	NM_016980	100503670.0	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	12.59	6.91	7.4	8.1	12.6	15.27	13.73	9.29	14.36
Merged-chr1-172368975-2	chr1	172368502	172369502	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039484, exon 2 of 2)	exon (NM_001039484, exon 2 of 2)	-7529.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	23.45	21.2	24.97	23.62	31.72	29.74	31.69	25.2	29.35
Merged-chr6-82863681-1	chr6	82863181	82864181	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18172.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	5.72	4.15	4.62	5.4	3.27	8.04	3.17	2.65	2.5
Merged-chr14-63111176-2	chr14	63110672	63111672	+	845.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11290.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	17.16	10.6	9.25	15.52	15.39	1.61	11.62	10.17	3.12
Merged-chr16-92028251-3	chr16	92027774	92028774	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30048.0	NM_017391	53881.0	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	31.46	32.72	24.97	35.09	28.92	30.54	44.36	55.71	31.85
Merged-chr15-25972927-3	chr15	25972438	25973438	+	845.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001277318, exon 7 of 7)	3' UTR (NM_001277318, exon 7 of 7)	-11428.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	8.01	3.69	2.77	2.02	7.0	1.61	8.45	4.42	0.0
Merged-chr9-72089116-3	chr9	72088618	72089618	+	845.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	L1MEc|LINE|L1	22083.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	9.15	7.83	9.25	15.52	8.86	11.25	9.51	7.52	8.74
Merged-chr2-6284883-3	chr2	6284368	6285368	+	845.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-37889.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	8.58	5.07	9.25	9.45	7.93	4.82	17.96	7.96	11.24
Merged-chr7-139400480-3	chr7	139399989	139400989	+	845.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355162)	promoter-TSS (NM_001355162)	-5.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	14.3	15.21	11.1	15.52	10.73	12.86	11.62	7.52	0.0
Merged-chr13-41079580-3	chr13	41079031	41080031	+	845.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 1 of 11)	CpG	175.0	NM_001145803	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	3.43	0.92	3.7	6.07	8.86	3.22	5.28	8.4	4.37
Merged-chr15-79891646-3	chr15	79891148	79892148	+	845.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160415)	promoter-TSS (NM_001160415)	-760.0	NM_001160415	80287.0	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Gm20117|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	46.34	59.9	37.92	40.48	49.92	60.28	70.76	105.24	49.34
Merged-chr5-32137277-3	chr5	32136790	32137790	+	845.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008037, intron 1 of 3)	intron (NM_008037, intron 1 of 3)	818.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	139.01	165.88	172.04	119.43	110.1	143.88	158.43	146.36	163.63
Merged-chr10-17275416-3	chr10	17274915	17275915	+	845.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179633.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.29	7.83	3.7	4.72	4.2	0.8	5.28	6.63	1.25
Merged-chr2-5035204-2	chr2	5034696	5035696	+	845.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 7 of 13)	intron (NM_001356487, intron 7 of 13)	-22405.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	118.42	119.8	102.67	97.16	69.51	65.91	181.66	225.06	103.05
Merged-chr5-113398160-1	chr5	113397660	113398660	+	845.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40866.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	2.86	5.53	0.0	6.75	10.26	8.04	5.28	3.54	5.62
Merged-chr4-134624270-3	chr4	134623752	134624752	+	845.3444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-56401.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	57.21	29.49	37.0	74.89	50.85	34.56	54.92	20.34	18.11
Merged-chrX-23695272-2	chrX	23694792	23695792	+	845.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	2241.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	10.3	13.36	14.8	24.96	10.26	16.08	22.18	26.09	17.49
Merged-chr9-53010944-1	chr9	53010444	53011444	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	237168.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	6.86	12.9	5.55	20.24	15.86	11.25	10.56	5.75	12.49
Merged-chr12-108700134-1	chr12	108699634	108700634	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027299, intron 1 of 2)	intron (NM_027299, intron 1 of 2)	2172.0	NM_001171002	70059.0	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	2.86	0.92	5.55	0.67	4.2	4.82	2.11	1.77	5.0
Merged-chr5-20228069-1	chr5	20227569	20228569	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 5 of 22)	intron (NM_001170746, intron 5 of 22)	320551.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	3.43	4.15	3.7	3.37	3.73	6.43	2.11	5.75	2.5
Merged-chr12-73610256-3	chr12	73609755	73610755	+	845.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	25459.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	32.61	27.19	38.85	62.07	33.59	41.8	29.57	13.71	16.24
Merged-chr8-25598939-3	chr8	25598429	25599429	+	845.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1442.0	NM_173012	270035.0	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	28.6	34.1	29.6	25.64	21.46	22.51	39.08	46.87	34.97
Merged-chr2-90965015-1	chr2	90964515	90965515	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	24618.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	17.16	13.82	25.9	17.54	25.66	20.9	20.07	17.24	15.61
Merged-chrX-93911335-1	chrX	93910835	93911835	+	845.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57321.0	NR_028320	385493.0	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	6.29	1.84	0.0	2.02	1.87	0.0	1.06	0.0	0.0
Merged-chr15-59037800-3	chr15	59037315	59038315	+	845.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	44211.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	29.75	22.12	7.4	44.53	27.99	28.13	38.02	31.84	21.23
Merged-chr13-23911527-2	chr13	23911033	23912033	+	845.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177016, intron 1 of 11)	Lx8b|LINE|L1	3474.0	NM_177016	319848.0	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	6.86	6.91	3.7	4.05	4.67	7.23	2.11	4.42	4.37
Merged-chr4-11580181-2	chr4	11579677	11580677	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256142, intron 1 of 1)	intron (NM_001256142, intron 1 of 1)	515.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	20.02	26.73	31.45	11.47	28.92	33.76	22.18	20.78	24.98
Merged-chr5-122770991-1	chr5	122770491	122771491	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199676, intron 1 of 16)	intron (NM_001199676, intron 1 of 16)	8419.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	22.88	16.13	24.05	35.09	18.19	40.99	5.28	5.31	4.37
Merged-chr4-95846573-1	chr4	95846073	95847073	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 13 of 15)	intron (NM_001113412, intron 13 of 15)	120462.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	3.43	3.23	5.55	2.7	2.33	3.22	6.34	5.75	1.25
Merged-chr2-167314896-1	chr2	167314396	167315396	+	845.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	B4|SINE|B4	34282.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	10.87	8.75	19.42	16.87	15.86	24.11	13.73	3.1	5.0
Merged-chr13-73804680-3	chr13	73804184	73805184	+	845.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 17 of 24)	intron (NM_001360694, intron 17 of 24)	40987.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	70.93	47.92	33.3	91.76	44.32	40.99	49.64	49.08	25.61
Merged-chr4-155812971-3	chr4	155812466	155813466	+	845.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207678, intron 1 of 10)	CpG	477.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	272.3	240.53	219.21	246.95	222.06	179.24	223.91	229.48	156.76
Merged-chrX-77534008-2	chrX	77533499	77534499	+	845.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	22772.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.0	6.91	24.05	4.72	4.2	1.61	4.22	3.54	7.49
Merged-chr9-62374767-5	chr9	62374230	62375230	+	845.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009672, exon 5 of 7)	exon (NM_009672, exon 5 of 7)	33387.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	48.05	74.19	49.02	53.98	52.25	58.68	45.42	42.01	31.23
Merged-chr6-17837916-3	chr6	17837438	17838438	+	845.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	88768.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	5.15	10.6	3.7	11.47	12.6	1.61	8.45	9.29	7.49
Merged-chr3-146946100-3	chr3	146945594	146946594	+	845.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302957, intron 18 of 21)	intron (NM_001302957, intron 18 of 21)	93727.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	4.58	4.15	5.55	3.37	1.87	0.0	3.17	2.65	3.75
Merged-chr15-58214089-3	chr15	58213685	58214685	+	845.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	707.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	54.92	38.71	28.67	58.03	68.58	45.82	55.98	31.39	38.72
Merged-chr8-41245301-2	chr8	41244803	41245803	+	845.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	RMER6B|LTR|ERVK	5544.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	8.58	11.52	5.55	11.47	11.66	8.84	36.97	19.46	19.98
Merged-chr4-8927720-2	chr4	8927219	8928219	+	845.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176395.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.15	0.46	5.55	2.7	3.73	3.22	7.39	4.86	5.0
Merged-chr2-122160858-3	chr2	122160360	122161360	+	845.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_080510, exon 1 of 7)	5' UTR (NM_080510, exon 1 of 7)	160.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	3.43	12.44	10.17	6.75	0.93	7.23	11.62	9.73	5.0
Merged-chr9-61056439-3	chr9	61055883	61056883	+	845.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39314.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	12.01	12.9	10.17	14.17	6.06	13.66	26.4	18.13	11.24
Merged-chr18-38372675-3	chr18	38372178	38373178	+	845.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-33685.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	58.35	58.98	38.85	62.07	45.25	60.28	35.91	53.06	40.59
Merged-chr8-117415785-2	chr8	117415299	117416299	+	845.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 4 of 20)	MTD|LTR|ERVL-MaLR	-37224.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	13.16	19.81	18.5	26.31	11.66	29.74	46.47	42.01	24.98
Merged-chr2-101922491-2	chr2	101921989	101922989	+	845.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36227.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	5.72	4.61	9.25	4.72	2.8	3.22	1.06	0.88	5.0
Merged-chr16-64852702-2	chr16	64852184	64853184	+	845.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	683.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	80.09	107.36	92.5	101.88	72.31	94.04	107.73	97.72	68.07
Merged-chrX-157476348-3	chrX	157475862	157476862	+	845.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009214, intron 1 of 10)	L1MB7|LINE|L1	15006.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	13.73	10.14	11.1	9.45	15.39	8.04	14.79	19.46	23.11
Merged-chr5-77373011-3	chr5	77372511	77373511	+	845.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	35034.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	6.86	4.61	0.0	8.1	4.2	6.43	3.17	5.75	7.49
Merged-chr18-61224463-3	chr18	61223975	61224975	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146086, intron 1 of 21)	intron (NM_146086, intron 1 of 21)	3976.0	NM_146086	225600.0	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	17.73	20.27	30.52	18.22	17.73	30.54	38.02	36.7	40.59
Merged-chr6-116468277-3	chr6	116467759	116468759	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7081.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	7.44	8.29	6.47	5.4	2.33	3.22	9.51	4.86	0.0
Merged-chr4-12245141-3	chr4	12244656	12245656	+	845.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73141.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.58	4.61	0.92	1.35	2.8	3.22	3.17	4.86	6.25
Merged-chr9-35535269-3	chr9	35534762	35535762	+	845.038879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	23208.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	1.72	3.23	1.85	7.42	4.67	1.61	1.06	0.0	3.75
Merged-chr9-90126481-3	chr9	90125980	90126980	+	845.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11660.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	29.75	54.83	37.92	25.64	38.25	31.35	58.09	55.71	34.35
Merged-chr4-131977451-2	chr4	131976941	131977941	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 9 of 20)	intron (NM_183428, intron 9 of 20)	55670.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	22.31	21.66	16.65	25.64	13.06	21.7	14.79	29.18	16.24
Merged-chr13-92335315-3	chr13	92334791	92335791	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-19492.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	3.43	5.07	0.92	12.14	13.53	17.68	4.22	3.98	0.0
Merged-chr1-105785256-1	chr1	105784756	105785756	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	4533.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	22.31	34.1	25.9	21.59	26.12	23.31	32.74	24.76	30.6
Merged-chr17-51239710-1	chr17	51239210	51240210	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38278.0	NR_037260	100526491.0		NR_037260	ENSMUSG00000105182	Mir669a-9	mmu-mir-669a-9	microRNA 4669a-9	ncRNA	6.86	2.3	1.85	2.7	9.8	3.22	5.28	1.33	4.37
Merged-chr17-8899376-1	chr17	8898876	8899876	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	49391.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	9.72	6.45	1.85	11.47	9.33	4.82	5.28	0.44	2.5
Merged-chr4-59575352-2	chr4	59574860	59575860	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-6203.0	NM_001301367	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	10.3	13.82	6.47	13.49	10.26	8.84	7.39	4.86	11.87
Merged-chr17-46644876-1	chr17	46644376	46645376	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357130, intron 1 of 15)	intron (NM_001357130, intron 1 of 15)	1204.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	21.17	11.98	7.4	29.69	18.66	14.47	13.73	13.71	10.62
Merged-chr14-77790965-1	chr14	77790465	77791465	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	8003.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	2.86	3.69	5.55	10.8	11.2	4.82	7.39	3.54	3.75
Merged-chr8-82846251-2	chr8	82845750	82846750	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17106.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	6.86	7.37	0.92	8.1	10.73	1.61	2.11	0.88	3.75
Merged-chr13-95799048-1	chr13	95798548	95799548	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92874.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.58	8.75	5.55	27.66	15.86	4.82	16.9	10.61	9.99
Merged-chr3-90156214-1	chr3	90155714	90156714	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029937, intron 15 of 39)	intron (NM_029937, intron 15 of 39)	52082.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	9.72	2.3	1.85	4.72	4.2	1.61	3.17	4.42	2.5
Merged-chr12-4720092-1	chr12	4719592	4720592	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029107, intron 6 of 7)	BGLII_B|LTR|ERVK	18291.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	2.29	1.38	9.25	4.72	7.46	4.82	3.17	5.31	6.25
Merged-chr12-26426460-1	chr12	26425960	26426960	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11198.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	32.61	32.72	24.05	22.94	21.93	33.76	7.39	2.65	4.37
Merged-chr8-61909984-1	chr8	61909484	61910484	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7290.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	69.22	67.27	36.07	65.45	61.58	70.73	90.83	95.95	48.71
Merged-chr16-55809663-2	chr16	55809137	55810137	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12501.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.15	5.07	9.25	7.42	6.06	8.04	6.34	3.98	7.49
Merged-chr3-109246265-1	chr3	109245765	109246765	+	845.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94418.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.0	7.37	5.55	7.42	4.67	9.65	11.62	7.07	5.0
Merged-chr3-156561715-1	chr3	156561215	156562215	+	845.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040399)	promoter-TSS (NR_040399)	-28.0	NR_040399	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	4.58	2.76	6.47	3.37	0.0	0.0	2.11	2.21	4.37
Merged-chr4-148500394-2	chr4	148499915	148500915	+	845.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039554)	promoter-TSS (NM_001039554)	47.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	74.94	94.92	90.65	99.18	118.96	127.0	31.69	30.95	22.48
Merged-chr5-16973584-3	chr5	16973149	16974149	+	844.992065	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	419748.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	26.31	31.33	29.6	22.27	21.46	42.6	44.36	51.29	33.72
Merged-chr1-165682186-3	chr1	165681671	165682671	+	844.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	25923.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	204.22	193.99	169.27	201.07	141.82	172.81	165.82	198.53	146.76
Merged-chr7-126655903-3	chr7	126655387	126656387	+	844.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029339, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	6578.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	26.89	30.41	25.9	28.34	25.19	32.15	29.57	24.76	33.72
Merged-chr11-69684508-3	chr11	69683976	69684976	+	844.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023517, intron 3 of 5)	intron (NM_023517, intron 3 of 5)	1078.0	NM_001159505	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	185.35	186.16	123.02	154.51	164.21	110.12	157.37	157.41	44.97
Merged-chr1-171661906-2	chr1	171661339	171662339	+	844.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8802.0	NM_144539	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	7.44	9.68	11.1	18.89	6.53	4.82	19.01	14.15	21.23
Merged-chr11-118173220-3	chr11	118172701	118173701	+	844.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112700, intron 10 of 12)	intron (NM_001112700, intron 10 of 12)	39541.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	24.03	11.06	20.35	15.52	9.8	22.51	6.34	8.4	9.37
Merged-chr10-9908145-3	chr10	9907641	9908641	+	844.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7101.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	4.58	3.69	0.0	11.47	6.06	0.0	7.39	4.86	5.0
Merged-chr4-136070159-3	chr4	136069662	136070662	+	844.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16791.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	8.58	4.15	7.4	4.05	1.87	1.61	4.22	0.44	1.25
Merged-chr4-88436860-2	chr4	88436367	88437367	+	844.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025760, intron 2 of 6)	intron (NM_025760, intron 2 of 6)	2059.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	16.02	17.97	9.25	35.76	18.19	20.9	58.09	59.69	16.86
Merged-chr7-132569016-3	chr7	132568518	132569518	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 2 of 9)	intron (NM_016978, intron 2 of 9)	7380.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	27.46	11.52	19.42	14.17	14.46	15.27	6.34	7.96	9.37
Merged-chr3-27268934-2	chr3	27268422	27269422	+	844.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-48155.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	6.86	5.99	0.0	18.89	6.53	10.45	28.52	13.71	11.87
Merged-chr8-95806829-3	chr8	95806335	95807335	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015574)	promoter-TSS (NR_015574)	5.0	NR_015574	319960.0	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	263.72	290.75	206.26	207.14	241.18	249.98	219.69	186.59	175.49
Merged-chr2-93976721-3	chr2	93976193	93977193	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3341.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	7.44	1.84	1.85	8.1	6.06	0.0	4.22	3.54	5.0
Merged-chr2-103638147-1	chr2	103637647	103638647	+	844.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71837.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.43	1.38	1.85	6.07	1.87	3.22	5.28	5.31	2.5
Merged-chr5-134258598-3	chr5	134258088	134259088	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359066, intron 15 of 32)	intron (NM_001359066, intron 15 of 32)	-28963.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	10.87	5.99	7.4	12.82	0.93	10.45	7.39	1.33	7.49
Merged-chr18-37934893-3	chr18	37934362	37935362	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	614.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	113.84	136.85	96.2	95.14	116.16	87.61	120.41	135.3	68.7
Merged-chr9-64740842-3	chr9	64740322	64741322	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3066.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	38.33	17.05	17.57	27.66	13.06	11.25	20.07	10.61	11.24
Merged-chr5-150168942-3	chr5	150168430	150169430	+	844.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91000.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.15	5.53	2.77	0.67	2.8	1.61	4.22	0.44	5.0
Merged-chr9-114794122-3	chr9	114793580	114794580	+	844.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12087.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	45.19	51.61	48.1	44.53	43.39	36.17	123.57	140.17	32.48
Merged-chr6-145247249-2	chr6	145246735	145247735	+	844.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2996.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	17.73	24.42	14.8	10.8	15.39	16.88	35.91	22.99	17.49
Merged-chr17-7877547-3	chr17	7877058	7878058	+	844.7999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48442.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	15.45	14.75	20.35	18.89	15.39	36.17	15.84	22.11	21.23
Merged-chr7-19178937-3	chr7	19178455	19179455	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347582, intron 1 of 21)	intron (NM_001347582, intron 1 of 21)	-2215.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	4.58	3.23	0.0	1.35	1.87	9.65	3.17	5.75	3.75
Merged-chr6-31353650-3	chr6	31353167	31354167	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45106.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	14.3	9.68	12.02	7.42	8.4	8.04	13.73	12.38	6.25
Merged-chr6-120454252-3	chr6	120453749	120454749	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8948.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	65.21	58.98	38.85	135.62	128.76	101.28	109.84	91.53	34.35
Merged-chr2-51150396-3	chr2	51149887	51150887	+	844.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-1276.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	6.29	7.37	4.62	1.35	3.27	0.8	3.17	3.98	3.75
Merged-chr19-40402425-1	chr19	40401925	40402925	+	844.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001034964)	promoter-TSS (NM_001034964)	-115.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	5.72	4.61	1.85	6.75	6.06	5.63	2.11	3.98	7.49
Merged-chr1-91428787-3	chr1	91428299	91429299	+	844.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 17 of 22)	intron (NM_011066, intron 17 of 22)	-14761.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	6.29	3.23	5.55	4.05	4.2	0.0	5.28	2.21	3.75
Merged-chr12-85659520-2	chr12	85658995	85659995	+	844.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27225.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	12.01	5.53	1.85	9.45	5.13	10.45	8.45	4.42	4.37
Merged-chr2-155696394-3	chr2	155695846	155696846	+	844.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	36.04	27.65	33.3	32.39	29.39	26.53	41.19	38.03	19.98
Merged-chr7-39545015-3	chr7	39544555	39545555	+	844.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27289.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	40.04	47.46	62.9	41.83	51.32	75.56	94.0	70.3	63.7
Merged-chr14-102867883-3	chr14	102867385	102868385	+	844.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114747.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	19.45	42.85	41.62	30.36	19.13	28.13	44.36	30.51	26.85
Merged-chr10-15297470-3	chr10	15296961	15297961	+	844.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-494316.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	17.16	9.22	1.85	11.47	13.06	9.65	8.45	6.19	8.74
Merged-chr15-8716606-3	chr15	8716112	8717112	+	844.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5805.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	37.76	53.91	35.15	22.27	29.39	24.92	57.03	59.25	39.35
Merged-chr2-71405800-1	chr2	71405300	71406300	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026115, intron 2 of 10)	B1F|SINE|Alu	-8676.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.57	0.0	0.0	10.8	7.46	13.66	13.73	15.48	10.62
Merged-chr10-96181595-3	chr10	96181095	96182095	+	844.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-44612.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	13.73	5.53	11.1	10.8	5.6	16.08	5.28	7.96	18.11
Merged-chr14-121279243-3	chr14	121278732	121279732	+	844.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134082, intron 24 of 26)	intron (NM_134082, intron 24 of 26)	30526.0	NR_155502	320268.0	Mm.435974	NR_155502		B930095G15Rik	-	RIKEN cDNA B930095G15 gene	ncRNA	4.0	3.69	2.77	3.37	0.93	0.0	2.11	1.33	5.0
Merged-chr14-74983254-1	chr14	74982754	74983754	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046078, intron 2 of 2)	intron (NR_046078, intron 2 of 2)	8168.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	2.29	2.3	0.0	3.37	3.27	4.82	4.22	3.54	1.25
Merged-chr4-97885727-1	chr4	97885227	97886227	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	108101.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	2.86	3.23	1.85	9.45	8.86	8.84	2.11	2.21	5.0
Merged-chrUn_JH584304-23623-1	chrUn_JH584304	23123	24123	+	844.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36066.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	25.35	13.71	0.0
Merged-chr13-85441818-1	chr13	85441318	85442318	+	844.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-152332.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.86	11.06	0.0	4.72	6.53	9.65	2.11	1.77	3.75
Merged-chr9-41085348-1	chr9	41084848	41085848	+	844.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5842.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	5.72	2.76	4.62	2.7	2.33	1.61	14.79	7.07	10.62
Merged-chr8-127330402-2	chr8	127329903	127330903	+	844.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013580, intron 3 of 13)	intron (NM_001013580, intron 3 of 13)	30751.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.72	5.99	7.4	7.42	3.73	3.22	2.11	6.19	5.0
Merged-chr11-120988539-3	chr11	120988037	120989037	+	844.6611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	2796.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	28.03	22.58	31.45	16.87	14.46	20.09	23.24	34.93	13.12
Merged-chr18-62985871-2	chr18	62985352	62986352	+	844.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 5 of 11)	MER102c|DNA|hAT-Charlie	7936.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	66.93	71.88	53.65	75.57	35.92	46.62	86.61	98.16	38.1
Merged-chr14-73384596-4	chr14	73384127	73385127	+	844.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	662.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	342.09	387.06	210.89	312.39	311.63	274.09	369.66	420.94	243.57
Merged-chr13-85556276-2	chr13	85555778	85556778	+	844.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-266792.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	6.86	5.53	1.85	6.07	3.73	8.04	6.34	3.1	3.75
Merged-chr2-113431067-3	chr2	113430585	113431585	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010230, intron 3 of 19)	intron (NM_010230, intron 3 of 19)	-9979.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.29	4.61	0.92	2.7	0.0	1.61	2.11	2.65	3.12
Merged-chr19-29494606-3	chr19	29494112	29495112	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	27375.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	27.46	17.05	31.45	22.94	25.19	39.39	34.85	60.13	29.35
Merged-chr13-35081297-3	chr13	35080798	35081798	+	844.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	86506.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	25.17	29.95	12.02	18.22	12.13	20.9	3.17	4.42	11.87
Merged-chr9-41154204-3	chr9	41153699	41154699	+	844.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	3863.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	17.73	20.27	10.17	26.31	12.13	26.53	40.14	43.77	23.73
Merged-chr3-145650763-3	chr3	145650262	145651262	+	844.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-777.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	1.14	1.38	0.0	10.12	6.06	20.9	10.56	8.84	10.62
Merged-chr2-124599195-3	chr2	124598684	124599684	+	844.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-11112.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	12.01	7.83	8.32	6.75	8.86	6.43	5.28	4.86	0.0
Merged-chr12-102517853-3	chr12	102517363	102518363	+	844.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37078.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	8.58	11.52	14.8	16.87	10.26	8.04	7.39	7.96	2.5
Merged-chr1-35971601-3	chr1	35971104	35972104	+	844.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-96796.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	33.18	32.25	5.55	30.36	27.99	21.7	41.19	40.24	16.24
Merged-chr15-64266808-3	chr15	64266298	64267298	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	45875.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	30.32	34.56	40.7	24.29	19.13	38.58	35.91	42.01	31.85
Merged-chr10-115312417-3	chr10	115311924	115312924	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	3167.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	19.45	10.14	9.25	16.19	11.66	8.84	12.67	6.19	7.49
Merged-chr3-87358869-2	chr3	87358384	87359384	+	844.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	B4|SINE|B4	1003.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	237.4	303.2	116.54	291.48	281.3	182.46	431.98	454.55	166.75
Merged-chr4-103359245-2	chr4	103358747	103359747	+	844.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 8 of 8)	B1F2|SINE|Alu	-23253.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	26.31	23.04	29.6	18.89	15.86	16.88	11.62	9.29	9.99
Merged-chr3-126746637-2	chr3	126746149	126747149	+	844.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 4 of 18)	intron (NM_001025438, intron 4 of 18)	149698.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	9.15	5.07	0.0	4.72	3.27	8.04	4.22	4.42	6.25
Merged-chr6-121343340-3	chr6	121342900	121343900	+	844.4500119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347433, intron 1 of 14)	intron (NM_001347433, intron 1 of 14)	324.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	4.0	1.84	1.85	6.07	1.87	1.61	7.39	2.21	1.25
Merged-chr15-67176180-4	chr15	67175713	67176713	+	844.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	669.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	100.11	132.71	86.02	62.75	64.84	75.56	97.17	96.83	78.69
Merged-chr9-20998492-3	chr9	20997964	20998964	+	844.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4273.0	NM_023167	66163.0	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	50.34	29.95	57.35	55.33	34.99	35.37	57.03	62.79	27.48
Merged-chr14-41021010-2	chr14	41020520	41021520	+	844.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-7187.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	6.29	6.91	8.32	8.1	2.33	0.0	13.73	10.17	11.87
Merged-chr2-34807051-2	chr2	34806542	34807542	+	844.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164769, exon 7 of 7)	3' UTR (NM_001164769, exon 7 of 7)	-7130.0	NM_145522	227746.0	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	44.05	39.63	57.35	33.06	26.59	40.99	43.3	40.24	37.47
Merged-chr3-9818165-3	chr3	9817676	9818676	+	844.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	15503.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	9.15	8.29	5.55	16.19	8.86	3.22	6.34	11.94	3.75
Merged-chr1-13332786-3	chr1	13332288	13333288	+	844.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	L1M4|LINE|L1	39641.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	10.3	12.44	1.85	15.52	9.33	6.43	11.62	11.94	3.75
Merged-chr16-30722519-2	chr16	30722029	30723029	+	844.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122806.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	9.72	6.91	9.25	10.12	6.53	0.8	9.51	6.63	6.25
Merged-chr8-106151901-4	chr8	106151318	106152318	+	844.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	1464.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	188.21	186.16	110.99	234.8	278.97	198.54	269.33	366.11	121.78
Merged-chr2-30773014-4	chr2	30772467	30773467	+	844.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28770.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	46.34	29.95	33.3	58.03	19.13	57.87	25.35	19.01	16.24
Merged-chr16-33886777-2	chr16	33886266	33887266	+	844.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	57101.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	33.18	29.49	37.92	59.38	38.25	60.28	50.7	51.73	31.85
Merged-chr9-120051720-2	chr9	120051205	120052205	+	844.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009987, exon 2 of 2)	exon (NM_009987, exon 2 of 2)	16591.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	15.45	15.21	16.65	45.88	32.66	21.7	6.34	3.54	11.24
Merged-chr5-122303542-3	chr5	122303030	122304030	+	844.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19132.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	4.58	4.61	3.7	5.4	5.6	12.86	5.28	3.54	3.75
Merged-chr8-82917101-1	chr8	82916601	82917601	+	844.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	53745.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.15	11.06	9.25	37.11	29.39	39.39	3.17	3.1	5.0
Merged-chr12-41315135-3	chr12	41314624	41315624	+	844.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170933.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	17.16	9.68	14.8	22.27	18.66	40.99	14.79	11.94	6.87
Merged-chr6-58907156-1	chr6	58906656	58907656	+	844.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021432)	promoter-TSS (NM_021432)	-30.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	2.86	4.15	0.0	6.07	2.8	1.61	1.06	1.33	0.0
Merged-chr13-38296801-1	chr13	38296301	38297301	+	844.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48915.0	NM_007556	12161.0	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	7.44	5.99	17.57	18.89	13.06	16.08	35.91	28.3	18.74
Merged-chr19-6018303-3	chr19	6017818	6018818	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045783, exon 5 of 5)	non-coding (NR_045783, exon 5 of 5)	-2493.0	NM_001110504	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	5.15	8.29	7.4	8.77	7.93	8.04	13.73	6.63	7.49
Merged-chr17-56251290-3	chr17	56250774	56251774	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5519.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	8.58	11.98	11.1	12.14	3.73	7.23	9.51	11.94	6.25
Merged-chr6-67170460-3	chr6	67169964	67170964	+	844.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96515.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	4.58	7.83	3.7	12.14	7.0	8.84	9.51	6.63	5.0
Merged-chr11-22617712-3	chr11	22617145	22618145	+	844.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105362.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.58	2.76	7.4	5.4	5.13	3.22	2.11	2.21	3.75
Merged-chr13-33068263-2	chr13	33067766	33068766	+	844.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15837.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	8.01	13.36	7.4	8.77	5.13	6.43	14.79	13.27	9.99
Merged-chr13-37893219-1	chr13	37892719	37893719	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 3 of 9)	intron (NM_001039188, intron 3 of 9)	4348.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	14.3	19.35	19.42	21.59	12.6	14.47	12.67	13.71	8.74
Merged-chr8-94093094-1	chr8	94092594	94093594	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5717.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	17.16	11.98	9.25	26.31	15.39	13.66	11.62	13.27	8.74
Merged-chr6-33484790-2	chr6	33484277	33485277	+	844.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	235649.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	15.45	33.18	16.65	34.41	51.78	18.49	30.63	41.12	16.24
Merged-chr4-121014736-3	chr4	121014240	121015240	+	844.2333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	2507.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	60.64	44.7	34.22	41.16	37.79	35.37	73.93	52.62	27.48
Merged-chr10-119239248-6	chr10	119238813	119239813	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027994, intron 1 of 14)	CpG	742.0	NM_027994	71902.0	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	163.04	152.52	131.34	151.81	123.16	131.82	127.8	109.22	94.3
Merged-chrX-162759574-3	chrX	162759031	162760031	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009031)	promoter-TSS (NM_009031)	-841.0	NM_009031	245688.0	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7, chromatin remodeling factor	protein-coding	89.81	93.08	49.95	107.95	96.57	65.11	73.93	89.32	29.35
Merged-chr3-95141654-3	chr3	95141139	95142139	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	721.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	85.24	89.85	105.44	75.57	83.97	87.61	116.18	144.15	83.06
Merged-chr2-102878216-3	chr2	102877709	102878709	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	23456.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	53.2	44.24	39.77	67.47	27.99	72.34	50.7	54.39	49.34
Merged-chr16-57530749-3	chr16	57530260	57531260	+	844.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-18482.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	22.31	16.59	7.4	31.04	16.33	12.86	14.79	14.15	10.62
Merged-chr17-11657094-1	chr17	11656594	11657594	+	844.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	226095.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	6.29	8.29	5.55	3.37	4.67	0.8	2.11	2.21	2.5
Merged-chr10-44635385-3	chr10	44634879	44635879	+	844.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176631.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	121.28	149.75	98.97	130.22	159.08	143.88	130.97	129.55	101.8
Merged-chr7-28432571-2	chr7	28432070	28433070	+	844.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	intron (NM_175021, intron 1 of 12)	3621.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	60.07	66.81	49.95	60.72	41.52	53.05	58.09	67.21	78.07
Merged-chr12-8889453-3	chr12	8888960	8889960	+	844.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31847.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	2.86	2.76	0.0	3.37	1.87	4.82	6.34	1.33	6.25
Merged-chr1-157518392-3	chr1	157517888	157518888	+	844.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033354, intron 2 of 27)	intron (NM_033354, intron 2 of 27)	-6665.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	28.6	23.04	33.3	11.47	9.8	14.47	20.07	10.17	14.36
Merged-chr10-118857255-2	chr10	118856741	118857741	+	844.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11662.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	26.31	23.5	12.95	41.83	28.92	20.9	9.51	5.31	12.49
Merged-chr14-55762673-2	chr14	55762113	55763113	+	844.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020490, exon 2 of 2)	exon (NM_020490, exon 2 of 2)	1185.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	65.21	65.43	45.32	92.44	67.64	64.3	83.44	57.04	67.45
Merged-chr7-19006661-3	chr7	19006150	19007150	+	844.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178757, exon 1 of 1)	3' UTR (NM_178757, exon 1 of 1)	2585.0	NM_178757	272359.0	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	8.58	3.23	3.7	4.72	5.6	8.04	2.11	2.21	1.25
Merged-chr4-24568204-3	chr4	24567704	24568704	+	844.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149739, intron 13 of 24)	intron (NR_149739, intron 13 of 24)	71753.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	10.3	13.36	5.55	12.82	7.93	8.04	5.28	7.96	7.49
Merged-chr4-141281577-3	chr4	141280997	141281997	+	844.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3058.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	8.01	5.99	5.55	20.92	13.06	11.25	13.73	11.05	1.25
Merged-chr5-72812851-3	chr5	72812350	72813350	+	844.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	55598.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	43.48	48.38	23.12	83.66	76.04	61.09	42.25	35.37	39.97
Merged-chr4-156033653-3	chr4	156033243	156034243	+	844.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7421.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	21.74	15.21	18.5	12.14	9.8	10.45	25.35	16.8	16.86
Merged-chr13-117198535-2	chr13	117198048	117199048	+	844.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-22025.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.0	3.23	1.85	4.05	1.87	0.0	2.11	3.54	3.75
Merged-chr2-160237556-2	chr2	160237062	160238062	+	844.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89932.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	80.66	90.31	66.6	99.18	80.24	96.45	96.11	106.56	67.45
Merged-chr9-21011189-3	chr9	21010672	21011672	+	844.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-4768.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	2.29	10.6	1.85	6.75	8.4	7.23	8.45	8.4	6.25
Merged-chr19-44385333-3	chr19	44384839	44385839	+	844.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	22370.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	62.35	48.38	49.95	85.01	50.38	56.27	88.72	63.67	33.72
Merged-chr4-129069086-2	chr4	129068580	129069580	+	844.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	10809.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	85.24	34.56	46.25	65.45	21.46	53.05	60.2	33.16	43.09
Merged-chr1-64190980-2	chr1	64190483	64191483	+	844.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69594.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	52.63	69.58	73.07	58.03	59.25	56.27	54.92	76.49	73.69
Merged-chr11-102437763-3	chr11	102437254	102438254	+	844.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008175)	TTS (NM_008175)	7432.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	9.72	4.15	11.1	15.52	5.6	6.43	12.67	7.52	3.75
Merged-chr8-76902915-1	chr8	76902415	76903415	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083906, intron 1 of 8)	intron (NM_001083906, intron 1 of 8)	407.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	14.87	10.14	3.7	22.27	12.13	3.22	15.84	8.4	11.24
Merged-chr9-61119392-1	chr9	61118892	61119892	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14006.0	NR_105026	66785.0	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	3.43	1.84	5.55	4.72	2.33	0.0	3.17	3.98	1.87
Merged-chr1-157077223-2	chr1	157076721	157077721	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31429.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	5.72	5.53	1.85	10.12	1.87	3.22	3.17	2.21	2.5
Merged-chr1-170277284-1	chr1	170276784	170277784	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012009)	promoter-TSS (NM_012009)	-34.0	NM_012009	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	2.29	2.3	14.8	7.42	6.53	6.43	5.28	4.42	0.0
Merged-chr19-56770808-3	chr19	56770301	56771301	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42882.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	19.45	14.75	19.42	15.52	12.6	25.72	11.62	7.52	9.37
Merged-chr1-180607629-1	chr1	180607129	180608129	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	20428.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	4.0	2.76	5.55	6.07	6.06	4.82	4.22	3.54	8.74
Merged-chr1-131018641-3	chr1	131018110	131019110	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1235.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	60.64	76.03	93.42	56.0	41.52	46.62	132.02	99.93	69.95
Merged-chr3-127496758-1	chr3	127496258	127497258	+	844.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	2357.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.57	2.76	0.0	2.02	1.87	0.0	10.56	13.27	7.49
Merged-chr8-57468765-1	chr8	57468265	57469265	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009136, intron 1 of 2)	B4A|SINE|B4	12842.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	5.72	3.69	11.1	9.45	8.86	4.82	5.28	1.77	2.5
Merged-chr18-70620299-3	chr18	70619802	70620802	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010773, intron 5 of 6)	intron (NM_010773, intron 5 of 6)	52010.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	19.45	24.42	22.2	8.1	10.26	20.09	19.01	27.86	30.6
Merged-chr6-32158413-1	chr6	32157913	32158913	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 29 of 31)	intron (NM_175750, intron 29 of 31)	108125.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	5.15	5.99	1.85	4.05	3.73	8.84	5.28	2.65	2.5
Merged-chr1-36068776-1	chr1	36068276	36069276	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_015818, exon 1 of 2)	exon (NM_015818, exon 1 of 2)	376.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	136.15	129.02	123.94	138.99	122.69	165.58	135.19	122.04	104.3
Merged-chr17-64789822-1	chr17	64789322	64790322	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22711.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	2.29	2.76	5.55	5.4	2.8	3.22	3.17	3.1	3.75
Merged-chr19-32361460-1	chr19	32360960	32361960	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	ORR1E-int|LTR|ERVL-MaLR	-12144.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.0	9.68	5.55	7.42	7.0	3.22	7.39	6.19	1.25
Merged-chr10-53421703-1	chr10	53421203	53422203	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152767, intron 2 of 2)	intron (NR_152767, intron 2 of 2)	11821.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	2.29	4.61	0.0	5.4	5.6	3.22	9.51	4.42	8.74
Merged-chr14-26487174-2	chr14	26486680	26487680	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	47444.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	22.31	29.49	22.2	26.99	15.86	13.66	31.69	25.65	19.36
Merged-chr12-111912514-3	chr12	111912012	111913012	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4457.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	19.45	24.42	24.05	72.19	72.78	39.39	77.1	70.3	46.22
Merged-chr3-107031744-1	chr3	107031244	107032244	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4418.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	4.0	3.23	0.0	4.72	3.27	3.22	4.22	3.1	1.87
Merged-chr10-34283318-1	chr10	34282818	34283818	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009433, exon 1 of 1)	exon (NM_009433, exon 1 of 1)	1128.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	90.96	111.05	80.47	80.97	77.91	77.16	92.94	103.02	58.71
Merged-chrX-142270951-1	chrX	142270451	142271451	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26554.0	NR_002883	434858.0	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	1.14	3.23	1.85	5.4	1.4	6.43	1.06	0.0	5.0
Merged-chr6-39244272-1	chr6	39243772	39244772	+	844.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37499.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	13.73	7.83	5.55	13.49	7.0	12.06	4.22	5.31	2.5
Merged-chr17-45559281-1	chr17	45558781	45559781	+	844.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001304956, exon 3 of 6)	exon (NM_001304956, exon 3 of 6)	3581.0	NM_001304956	18037.0	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	11.44	6.91	3.7	7.42	3.27	12.86	4.22	5.75	5.62
Merged-chrX-20355500-2	chrX	20355003	20356003	+	843.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8978.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	6.29	11.52	5.55	10.12	4.67	1.61	3.17	3.98	4.37
Merged-chr5-41707153-3	chr5	41706639	41707639	+	843.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132325, intron 1 of 5)	intron (NR_132325, intron 1 of 5)	552.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	51.48	46.08	24.97	55.33	36.39	15.27	44.36	35.82	36.85
Merged-chr6-71444949-3	chr6	71444448	71445448	+	843.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-4311.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	44.62	48.38	57.35	45.88	41.99	61.09	73.93	54.39	34.35
Merged-chr11-76900210-2	chr11	76899692	76900692	+	843.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4353.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	18.88	8.29	14.8	12.14	11.2	22.51	19.01	13.71	11.87
Merged-chr7-28601931-2	chr7	28601430	28602430	+	843.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3746.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	8.58	5.99	3.7	6.07	1.4	9.65	3.17	2.21	3.75
Merged-chr7-90481051-2	chr7	90480545	90481545	+	843.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-5050.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	14.87	5.99	11.1	14.84	9.8	6.43	0.0	0.0	2.5
Merged-chr7-30698306-2	chr7	30697808	30698808	+	843.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026961)	promoter-TSS (NM_026961)	-618.0	NM_026961	69147.0	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	8.01	3.23	5.55	10.12	2.8	3.22	1.06	0.88	2.5
Merged-chr9-21135172-3	chr9	21134653	21135653	+	843.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3878.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	127.57	110.13	129.49	81.64	48.52	86.81	120.41	107.45	53.71
Merged-chr5-117505371-3	chr5	117504870	117505870	+	843.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 2 of 19)	intron (NM_001312914, intron 2 of 19)	91368.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.57	2.76	0.0	4.05	0.93	4.82	1.06	0.88	2.5
Merged-chr18-5807292-2	chr18	5806783	5807783	+	843.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	214636.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	58.35	67.74	48.1	88.39	49.92	50.64	43.3	35.82	28.1
Merged-chr8-115486988-2	chr8	115486479	115487479	+	843.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57E1|LTR|ERV1	219915.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	22.88	23.04	15.72	21.59	14.0	25.72	23.24	26.09	13.74
Merged-chr1-86218104-3	chr1	86217614	86218614	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	MIRb|SINE|MIR	63334.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	29.17	28.11	14.8	24.96	14.0	19.29	6.34	7.52	2.5
Merged-chr10-39321710-2	chr10	39321150	39322150	+	843.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48149.0	NM_001122892	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	9.15	5.99	11.1	6.07	9.33	3.22	12.67	7.07	0.0
Merged-chr5-142424934-1	chr5	142424434	142425434	+	843.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 1 of 8)	intron (NM_199068, intron 1 of 8)	23437.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	7.44	8.29	7.4	16.19	5.13	24.92	7.39	7.96	3.12
Merged-chr4-95924928-3	chr4	95924428	95925428	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42107.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	6.86	4.61	1.85	5.4	3.73	4.82	16.9	13.27	12.49
Merged-chr11-87763780-1	chr11	87763280	87764280	+	843.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172449, intron 4 of 31)	intron (NM_172449, intron 4 of 31)	3239.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	6.86	2.76	0.0	2.02	0.47	3.22	1.06	0.88	1.25
Merged-chr14-117778721-3	chr14	117778242	117779242	+	843.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	175105.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.58	7.37	16.65	8.77	3.73	8.04	12.67	10.61	5.0
Merged-chr3-97957725-1	chr3	97957225	97958225	+	843.7999880000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	RSINE1|SINE|B4	27552.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	8.01	7.37	16.65	16.19	8.4	4.82	13.73	13.27	11.24
Merged-chr2-124616182-4	chr2	124615557	124616557	+	843.7916869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	5761.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	64.64	64.97	51.8	64.77	48.52	73.14	55.98	51.29	45.59
Merged-chr10-122882807-3	chr10	122882294	122883294	+	843.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	102930.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	8.58	5.07	1.85	14.17	9.8	14.47	5.28	3.1	1.25
Merged-chr12-51848126-3	chr12	51847619	51848619	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18583.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	28.03	20.74	31.45	33.74	44.32	30.54	10.56	5.75	12.49
Merged-chr6-113441382-3	chr6	113440936	113441936	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1081.0	NM_001205025	67767.0	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	3.43	2.76	10.17	2.7	2.8	4.82	6.34	6.19	4.37
Merged-chr7-118494625-3	chr7	118494119	118495119	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2644.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	18.88	11.06	15.72	13.49	12.13	11.25	5.28	1.33	3.75
Merged-chr11-121808430-3	chr11	121807927	121808927	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21791.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	9.72	8.75	4.62	8.1	2.33	1.61	11.62	4.42	3.75
Merged-chr1-191138544-3	chr1	191138020	191139020	+	843.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26297.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	15.45	11.98	21.27	24.29	12.6	20.09	12.67	8.4	8.12
Merged-chrX-75764525-1	chrX	75764025	75765025	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_029443, intron 1 of 8)	intron (NR_029443, intron 1 of 8)	174.0	NR_029443	74396.0	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik|Dxz4	RIKEN cDNA 4933407K13 gene	ncRNA	13.73	15.67	22.2	25.64	21.93	28.94	17.96	24.32	14.36
Merged-chr7-122261776-2	chr7	122261276	122262276	+	843.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27349.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	25.17	27.65	37.92	41.83	9.8	52.25	15.84	19.46	19.36
Merged-chr5-23132447-1	chr5	23131947	23132947	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	RLTR11B|LTR|ERVK	301906.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.72	5.53	7.4	6.75	8.86	10.45	3.17	3.1	4.37
Merged-chr2-59925390-3	chr2	59924850	59925850	+	843.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 20 of 35)	intron (NM_001001182, intron 20 of 35)	-42744.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	11.44	31.33	31.45	32.39	35.45	24.92	29.57	21.67	18.11
Merged-chr14-51098501-2	chr14	51098001	51099001	+	843.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201239, intron 1 of 1)	intron (NM_201239, intron 1 of 1)	2501.0	NM_201239	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	7.44	2.76	4.62	8.77	5.13	9.65	4.22	2.65	0.0
Merged-chr19-53128666-3	chr19	53128156	53129156	+	843.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11787.0	NM_001164099	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	5.72	11.98	5.55	7.42	10.26	24.92	9.51	3.98	8.74
Merged-chr10-60388551-3	chr10	60388063	60389063	+	843.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-11163.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	5.15	2.3	4.62	13.49	9.8	17.68	6.34	5.75	3.12
Merged-chr12-25339860-3	chr12	25339347	25340347	+	843.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210673.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	53.77	40.55	47.17	21.59	38.25	40.99	35.91	45.54	33.72
Merged-chr16-57423597-3	chr16	57423093	57424093	+	843.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	70316.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	149.88	101.83	84.17	112.68	91.9	83.59	89.78	80.03	60.58
Merged-chr13-114457342-3	chr13	114456850	114457850	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301375, intron 1 of 5)	CpG	1601.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	4.0	0.46	1.85	4.72	2.8	3.22	3.17	0.88	5.0
Merged-chr10-118797422-1	chr10	118796922	118797922	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71481.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	98.97	64.05	44.4	90.41	59.71	61.09	48.58	53.94	33.1
Merged-chr10-122575628-1	chr10	122575128	122576128	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5737.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	27.46	26.26	20.35	33.74	32.66	37.78	59.15	45.54	34.97
Merged-chr16-34700384-3	chr16	34699885	34700885	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172824, intron 5 of 12)	intron (NM_172824, intron 5 of 12)	9769.0	NM_172824	239839.0	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	3.43	3.69	0.0	4.72	2.33	1.61	3.17	6.63	2.5
Merged-chr3-52030251-1	chr3	52029751	52030751	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	74755.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	17.73	5.07	6.47	9.45	5.6	11.25	13.73	6.19	5.0
Merged-chr9-9238523-1	chr9	9238023	9239023	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	490.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	13.16	17.51	23.12	29.01	22.86	23.31	34.85	29.63	23.11
Merged-chr7-101836841-3	chr7	101836385	101837385	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122739, exon 2 of 29)	5' UTR (NM_001122739, exon 2 of 29)	939.0	NM_001122739	16332.0	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	61.78	58.98	77.7	51.28	41.99	67.52	80.27	59.69	43.09
Merged-chr18-80984257-1	chr18	80983757	80984757	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178280, intron 1 of 3)	intron (NM_178280, intron 1 of 3)	2321.0	NM_178280	20689.0	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	1.72	2.76	0.0	4.05	2.8	1.61	6.34	1.33	1.25
Merged-chr4-4791344-1	chr4	4790844	4791844	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177730, intron 1 of 4)	intron (NM_177730, intron 1 of 4)	1962.0	NM_177730	242291.0	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	8.58	4.61	7.4	7.42	5.6	1.61	8.45	5.31	5.0
Merged-chr13-38503732-1	chr13	38503232	38504232	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289599, intron 8 of 9)	intron (NM_001289599, intron 8 of 9)	24182.0	NM_001289599	105245.0	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	4.58	0.92	0.0	4.05	4.67	6.43	3.17	4.86	8.12
Merged-chr5-53929651-3	chr5	53929153	53930153	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68870.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	24.03	22.12	16.65	39.81	30.79	34.56	30.63	22.11	21.23
Merged-chr10-94337764-1	chr10	94337264	94338264	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	polypurine|Low_complexity|Low_complexity	25815.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	41.19	43.77	44.4	42.51	55.05	45.01	44.36	35.37	27.48
Merged-chr1-80716194-3	chr1	80715699	80716699	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42354.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	8.01	13.36	5.55	24.29	14.0	16.08	17.96	11.5	17.49
Merged-chr2-131423764-1	chr2	131423264	131424264	+	843.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-68098.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	17.73	16.59	10.17	24.29	17.26	21.7	33.8	12.38	2.5
Merged-chr12-55459939-3	chr12	55459436	55460436	+	843.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32711.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	22.31	13.36	7.4	16.87	12.13	12.86	19.01	19.46	4.37
Merged-chr1-195040629-2	chr1	195040138	195041138	+	843.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_132621)	TTS (NR_132621)	3091.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	4.58	3.69	11.1	5.4	1.4	4.82	4.22	1.33	3.75
Merged-chr11-34771847-2	chr11	34771339	34772339	+	843.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	12066.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	93.82	117.04	72.15	101.21	69.04	73.14	115.12	102.58	67.45
Merged-chr8-105339149-3	chr8	105338645	105339645	+	843.64447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	8825.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	57.21	57.6	49.02	62.75	52.25	67.52	101.39	116.73	35.6
Merged-chr2-167804480-3	chr2	167803867	167804867	+	843.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113190.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	187.06	165.88	100.82	199.72	141.35	116.55	181.66	229.04	107.42
Merged-chr14-66295953-3	chr14	66295443	66296443	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038077, intron 2 of 2)	MTD|LTR|ERVL-MaLR	-1082.0	NM_029979	66854.0	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	14.3	14.75	15.72	9.45	3.73	7.23	13.73	7.96	11.87
Merged-chr4-116144513-3	chr4	116144036	116145036	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026547)	promoter-TSS (NM_026547)	80.0	NM_026547	68075.0	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	6.29	7.37	11.1	4.05	5.13	11.25	4.22	3.98	3.75
Merged-chr9-57820629-3	chr9	57820138	57821138	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019689, intron 1 of 7)	intron (NM_019689, intron 1 of 7)	13596.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	22.31	15.21	11.1	18.89	17.26	14.47	17.96	10.17	14.99
Merged-chr6-8420209-3	chr6	8419685	8420685	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	CT-rich|Low_complexity|Low_complexity	88976.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	9.72	7.37	12.95	20.92	20.53	24.11	11.62	15.48	8.74
Merged-chr9-104285079-3	chr9	104284584	104285584	+	843.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22154.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	6.86	8.75	12.95	8.77	7.93	1.61	9.51	4.42	6.25
Merged-chr13-110384734-3	chr13	110384189	110385189	+	843.5166630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-10355.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.58	3.23	2.77	1.35	0.47	4.02	3.17	0.88	0.62
Merged-chr10-77605500-3	chr10	77604995	77605995	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_125904)	promoter-TSS (NR_125904)	-602.0	NM_001301672	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	86.95	110.13	67.52	82.99	92.37	94.85	83.44	123.36	64.33
Merged-chr4-45455414-2	chr4	45454914	45455914	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 3 of 5)	intron (NM_001033306, intron 3 of 5)	-46648.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	23.45	32.72	17.57	49.25	43.39	45.82	23.24	22.11	16.24
Merged-chr2-181365925-2	chr2	181365398	181366398	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001165991)	promoter-TSS (NM_001165991)	475.0	NM_001048148	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	143.01	114.74	92.5	117.4	116.16	114.94	102.45	103.47	83.69
Merged-chr14-19916074-1	chr14	19915574	19916574	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285910, intron 1 of 2)	intron (NM_001285910, intron 1 of 2)	60619.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	12.01	14.75	1.85	14.17	10.26	10.45	24.29	18.57	5.62
Merged-chr18-25904870-1	chr18	25904370	25905370	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150713.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.58	4.15	0.0	4.05	3.73	12.86	9.51	1.33	3.75
Merged-chr18-54937929-1	chr18	54937429	54938429	+	843.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	52251.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	9.15	5.53	1.85	12.14	10.26	9.65	5.28	6.19	3.75
Merged-chr11-117332371-3	chr11	117331861	117332861	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	48.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	41.76	21.66	32.37	31.71	29.39	55.46	22.18	16.36	19.98
Merged-chr18-11351863-2	chr18	11351351	11352351	+	843.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-281425.0	NM_001252495	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	32.04	19.81	8.32	49.93	83.04	50.64	9.51	8.84	4.37
Merged-chr6-117875039-3	chr6	117874482	117875482	+	843.4833369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12101.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	47.48	35.94	28.67	63.42	72.78	65.91	67.6	81.8	27.48
Merged-chr2-128124141-3	chr2	128123623	128124623	+	843.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028765)	TTS (NM_028765)	-1915.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	13.16	9.68	7.4	14.84	11.2	14.47	17.96	8.4	13.12
Merged-chr10-80017614-3	chr10	80017121	80018121	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347074, intron 1 of 22)	intron (NM_001347074, intron 1 of 22)	706.0	NM_001347074	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	30.32	19.81	20.35	20.24	32.66	48.23	32.74	33.16	17.49
Merged-chr8-57596121-3	chr8	57595628	57596628	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-55625.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	7.44	5.07	5.55	10.12	3.73	4.82	11.62	8.4	1.25
Merged-chr9-108694253-3	chr9	108693735	108694735	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	intron (NM_008924, intron 1 of 10)	2092.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	25.74	18.43	30.52	17.54	19.13	8.04	25.35	16.8	21.23
Merged-chr3-51422216-3	chr3	51421720	51422720	+	843.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	6204.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	18.31	22.58	16.65	15.52	13.53	20.09	23.24	26.53	14.36
Merged-chr1-59483908-3	chr1	59483433	59484433	+	843.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1786.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	17.16	8.29	8.32	10.8	7.0	16.88	5.28	15.92	9.37
Merged-chr8-115571905-3	chr8	115571393	115572393	+	843.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	135001.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.29	9.68	4.62	19.57	7.46	10.45	7.39	4.42	25.61
Merged-chr11-115613396-3	chr11	115612906	115613906	+	843.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243586)	promoter-TSS (NM_001243586)	-437.0	NM_001243587	69674.0	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	36.04	38.71	39.77	44.53	32.66	60.28	88.72	71.19	52.46
Merged-chr8-45439367-3	chr8	45438908	45439908	+	843.35553	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28789.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	6.29	2.3	7.4	4.72	2.33	0.0	3.17	2.21	2.5
Merged-chr17-46154516-2	chr17	46154020	46155020	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025649)	promoter-TSS (NM_025649)	-969.0	NM_025649	66591.0	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	10.87	10.6	7.4	11.47	2.8	5.63	23.24	10.17	18.11
Merged-chr7-69985931-2	chr7	69985436	69986436	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351886.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	5.72	8.29	4.62	20.92	25.66	43.4	22.18	35.82	33.72
Merged-chr14-103392562-2	chr14	103392062	103393062	+	843.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45762.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	8.58	8.75	3.7	10.12	9.33	6.43	7.39	12.82	3.75
Merged-chr2-132586071-1	chr2	132585571	132586571	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7823.0	NM_001355652	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	13.16	9.22	11.1	12.14	13.53	9.65	10.56	11.05	18.11
Merged-chr6-51178601-3	chr6	51178037	51179037	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	91373.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	5.72	5.07	2.77	1.35	0.93	0.0	19.01	12.82	10.62
Merged-chr16-17558179-1	chr16	17557679	17558679	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029053, exon 4 of 9)	exon (NM_029053, exon 4 of 9)	3068.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	8.58	10.14	8.32	8.1	5.6	2.41	6.34	0.44	1.25
Merged-chr8-106959760-3	chr8	106959264	106960264	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	MTC|LTR|ERVL-MaLR	24014.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	12.01	9.68	24.05	13.49	14.46	4.82	13.73	9.29	9.99
Merged-chr10-95682516-3	chr10	95681991	95682991	+	843.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118345.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	14.3	9.68	1.85	16.19	5.6	0.8	5.28	3.98	6.25
Merged-chr18-80371372-1	chr18	80370872	80371872	+	843.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7118.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	5.15	3.69	7.4	10.8	3.73	8.84	6.34	0.0	6.25
Merged-chr6-103525822-3	chr6	103525316	103526316	+	843.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007697, intron 1 of 26)	intron (NM_007697, intron 1 of 26)	14940.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	8.01	8.29	9.25	8.1	2.8	6.43	1.06	6.19	4.37
Merged-chr10-126979603-5	chr10	126979134	126980134	+	843.2999880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113470, intron 1 of 7)	CpG	917.0	NM_001113470	52468.0	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	68.65	60.82	69.37	78.27	58.78	106.1	74.99	50.85	59.95
Merged-chr3-51511069-3	chr3	51510560	51511560	+	843.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27094.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	9.15	4.15	2.77	14.17	6.06	6.43	9.51	5.75	0.62
Merged-chr13-81785887-1	chr13	81785387	81786387	+	843.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007684, intron 2 of 4)	intron (NM_007684, intron 2 of 4)	2640.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	14.3	27.65	16.65	22.94	19.13	18.49	24.29	23.43	8.74
Merged-chr1-135514312-2	chr1	135513810	135514810	+	843.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-59627.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	16.59	16.59	20.35	8.77	2.8	7.23	4.22	3.1	7.49
Merged-chr5-135611090-2	chr5	135610595	135611595	+	843.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21559.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	17.16	13.82	5.55	27.66	18.19	27.33	26.4	16.36	9.99
Merged-chr11-108252120-3	chr11	108251607	108252607	+	843.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	91781.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	15.45	5.53	11.1	9.45	2.33	1.61	5.28	7.52	3.12
Merged-chr7-113193216-3	chr7	113192714	113193714	+	843.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14251.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	25.17	40.09	20.35	43.86	30.79	31.35	32.74	22.99	49.96
Merged-chr13-37333595-3	chr13	37333093	37334093	+	843.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11752.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	41.19	52.07	38.85	36.43	31.72	37.78	48.58	53.94	43.09
Merged-chr2-61139112-3	chr2	61138620	61139620	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163969.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	34.32	28.57	11.1	68.15	55.51	36.17	16.9	5.75	8.74
Merged-chr3-108923282-3	chr3	108922787	108923787	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-11558.0	NM_001356292	66921.0	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	15.45	9.22	6.47	8.1	3.27	2.41	13.73	5.31	1.87
Merged-chr9-90105676-3	chr9	90105196	90106196	+	843.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 3 of 12)	intron (NM_001039147, intron 3 of 12)	9124.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	24.03	40.09	10.17	32.39	32.19	38.58	38.02	41.56	42.47
Merged-chr1-88698459-3	chr1	88697892	88698892	+	843.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177305, exon 1 of 1)	3' UTR (NM_177305, exon 1 of 1)	3799.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	85.24	73.26	54.57	52.63	34.52	57.07	46.47	34.93	38.1
Merged-chr10-16637200-3	chr10	16636706	16637706	+	843.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	458576.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.58	5.53	4.62	4.05	10.26	5.63	4.22	1.77	2.5
Merged-chr7-97809533-3	chr7	97809031	97810031	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	MIRb|SINE|MIR	20990.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	14.3	25.8	25.9	16.87	13.06	10.45	17.96	30.95	15.61
Merged-chr1-74201221-3	chr1	74200727	74201727	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	5393.0	NR_035449	100316687.0		NR_035449	ENSMUSG00000087820	Mir1928	mmu-mir-1928	microRNA 1928	ncRNA	17.16	15.67	24.05	46.56	29.86	24.11	47.53	33.6	21.23
Merged-chr1-192939198-3	chr1	192938701	192939701	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 4 of 8)	GA-rich|Low_complexity|Low_complexity	-83449.0	NM_198247	214791.0	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	4.58	3.23	1.85	7.42	3.73	4.82	4.22	6.63	5.62
Merged-chr16-11411916-3	chr16	11411415	11412415	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290148, intron 1 of 13)	RLTR20C2_MM|LTR|ERVK	6267.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	11.44	13.82	18.5	20.24	14.46	11.25	9.51	10.17	4.37
Merged-chr9-45261617-4	chr9	45261084	45262084	+	843.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	intron (NR_136903, intron 4 of 5)	5123.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	50.91	52.07	58.27	60.72	67.18	73.14	84.49	68.09	46.84
Merged-chr12-79050943-2	chr12	79050392	79051392	+	843.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181073, intron 4 of 28)	intron (NM_181073, intron 4 of 28)	21729.0	NM_181073	211945.0	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	2.29	6.45	0.0	10.8	7.0	5.63	8.45	7.07	3.75
Merged-chr4-126204852-3	chr4	126204361	126205361	+	843.1166380000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2151.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	149.88	145.61	112.84	123.47	99.37	108.51	148.92	188.36	84.94
Merged-chr10-95679018-3	chr10	95678522	95679522	+	843.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-114876.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	43.48	36.86	22.2	47.23	30.32	42.6	25.35	26.53	20.61
Merged-chr14-122223851-3	chr14	122223359	122224359	+	843.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9779.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	7.44	5.99	1.85	4.05	3.27	0.0	4.22	2.65	6.25
Merged-chr4-141538103-3	chr4	141537561	141538561	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	536.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	186.49	123.03	137.82	201.74	81.64	156.74	167.93	85.34	88.06
Merged-chr11-114885979-3	chr11	114885482	114886482	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4059.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	97.82	78.79	61.05	82.99	69.51	113.33	77.1	72.07	63.08
Merged-chr2-43673799-3	chr2	43673300	43674300	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 12 of 12)	intron (NM_001289593, intron 12 of 12)	-75024.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.57	4.15	0.0	2.7	0.47	1.61	3.17	0.44	6.25
Merged-chrX-155191921-3	chrX	155191413	155192413	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24536.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	34.32	27.19	22.2	42.51	34.99	47.42	29.57	28.74	25.61
Merged-chr5-139398546-3	chr5	139398056	139399056	+	843.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-7831.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	144.73	101.83	101.74	152.49	113.83	88.42	90.83	98.6	71.82
Merged-chr17-36967013-2	chr17	36966500	36967500	+	843.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8408.0	NM_029602	76416.0	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	2.29	1.84	3.7	4.05	6.53	13.66	5.28	8.4	7.49
Merged-chr11-50211741-3	chr11	50211231	50212231	+	843.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011018)	promoter-TSS (NM_011018)	-911.0	NM_011018	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	248.84	220.25	124.87	246.95	158.15	156.74	207.01	197.65	87.43
Merged-chr5-144963576-3	chr5	144963090	144964090	+	843.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	2240.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	10.3	14.28	10.17	22.94	5.13	17.68	11.62	7.07	11.87
Merged-chr6-86584499-3	chr6	86584043	86585043	+	843.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43631.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	252.28	229.93	184.99	186.9	169.34	174.42	227.08	270.61	119.28
Merged-chr16-22545218-3	chr16	22544747	22545747	+	843.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13063.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	56.63	42.85	32.37	62.07	25.19	29.74	66.54	63.23	29.98
Merged-chr10-8953158-2	chr10	8952659	8953659	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67089.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.14	1.38	5.55	6.75	6.53	3.22	3.17	7.07	7.49
Merged-chr13-93013161-2	chr13	93012662	93013662	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60142.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	6.86	2.76	7.4	4.05	3.27	0.0	11.62	12.82	8.74
Merged-chr14-63079518-1	chr14	63079018	63080018	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24445.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	295.18	329.0	211.81	350.85	289.24	286.15	358.05	452.78	176.74
Merged-chr15-97520641-1	chr15	97520141	97521141	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	185181.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	39.47	37.32	26.82	54.65	58.78	47.42	38.02	43.33	16.24
Merged-chr10-51481039-2	chr10	51480554	51481554	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291893, intron 2 of 7)	intron (NM_001291893, intron 2 of 7)	442.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	206.51	240.53	92.5	315.09	316.29	258.82	212.29	324.55	138.65
Merged-chr4-44704569-1	chr4	44704069	44705069	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_073462, exon 1 of 1)	non-coding (NR_073462, exon 1 of 1)	1769.0	NR_073462	70602.0	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	2.86	0.0	0.0	1.35	1.87	0.8	2.11	1.33	0.62
Merged-chr18-83740663-1	chr18	83740163	83741163	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	345899.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.72	0.46	0.0	4.72	0.47	4.82	2.11	1.33	0.0
Merged-chr12-104273731-1	chr12	104273231	104274231	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10609.0	NM_001199940	628900.0	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	2.86	4.61	1.85	2.7	2.33	3.22	4.22	3.98	8.74
Merged-chr6-135163509-1	chr6	135163009	135164009	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	4706.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	16.59	17.51	27.75	18.22	14.0	17.68	14.79	15.03	11.87
Merged-chr9-47435471-1	chr9	47434971	47435971	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94699.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.86	4.15	3.7	10.12	4.2	8.84	2.11	3.54	6.87
Merged-chr2-72962330-1	chr2	72961830	72962830	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001018042, intron 4 of 6)	intron (NM_001018042, intron 4 of 6)	16951.0	NM_001098425	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	12.59	14.75	0.0	17.54	9.33	8.04	23.24	9.73	15.61
Merged-chr15-100679150-2	chr15	100678651	100679651	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 6 of 7)	intron (NM_033612, intron 6 of 7)	8769.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	118.42	85.25	71.22	112.68	53.65	94.04	81.33	108.33	68.07
Merged-chr1-106163475-1	chr1	106162975	106163975	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040630, intron 2 of 2)	intron (NR_040630, intron 2 of 2)	8049.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	3.43	2.76	3.7	10.12	5.6	8.04	5.28	2.21	0.0
Merged-chr9-112180176-1	chr9	112179676	112180676	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177615, exon 5 of 5)	3' UTR (NM_001177615, exon 5 of 5)	5773.0	NM_001177618	74100.0	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	2.29	5.07	9.25	12.14	7.0	11.25	6.34	1.77	5.0
Merged-chr11-49204575-1	chr11	49204075	49205075	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	1075.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	199.07	123.03	97.12	171.38	110.56	110.12	152.09	136.19	85.56
Merged-chr9-16307128-1	chr9	16306628	16307628	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	MTE2b|LTR|ERVL-MaLR	71103.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	2.86	4.15	5.55	6.07	6.06	12.86	7.39	4.86	0.0
Merged-chr2-44977768-2	chr2	44977268	44978268	+	843.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45409.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.15	6.91	3.7	3.37	1.87	1.61	2.11	3.1	6.25
Merged-chr18-12862462-1	chr18	12861962	12862962	+	843.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252493, exon 1 of 15)	5' UTR (NM_001252493, exon 1 of 15)	251.0	NM_001252493	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	7.44	4.61	1.85	6.07	3.73	0.8	2.11	0.0	1.25
Merged-chr14-105164927-3	chr14	105164443	105165443	+	842.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	12384.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	22.31	28.11	19.42	39.81	24.26	14.47	39.08	30.95	26.23
Merged-chr19-29391456-3	chr19	29390950	29391950	+	842.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19469.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	16.02	15.67	14.8	24.29	11.2	10.45	45.42	29.63	14.36
Merged-chr15-81960330-3	chr15	81959847	81960847	+	842.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282041, intron 1 of 5)	CpG	583.0	NM_001282040	29858.0	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	18.88	22.58	18.5	25.64	36.39	30.54	38.02	35.37	24.36
Merged-chr13-94322640-3	chr13	94322127	94323127	+	842.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	36296.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	5.72	6.91	4.62	10.8	9.8	9.65	8.45	6.63	2.5
Merged-chr8-111550377-3	chr8	111549881	111550881	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	12038.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	10.87	10.6	10.17	18.89	20.53	32.15	11.62	11.5	5.0
Merged-chr3-144689444-2	chr3	144688944	144689944	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019464, exon 9 of 9)	3' UTR (NM_019464, exon 9 of 9)	30891.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	12.01	11.52	3.7	15.52	7.46	16.88	12.67	1.77	1.87
Merged-chr5-43818877-3	chr5	43818365	43819365	+	842.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009763)	promoter-TSS (NM_009763)	-28.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	8.58	3.69	6.47	4.72	8.4	8.04	2.11	1.77	1.25
Merged-chr8-124857218-2	chr8	124856706	124857706	+	842.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	MurERV4-int|LTR|ERVK	5823.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	50.91	48.38	48.1	76.24	46.65	73.95	2.11	1.77	2.5
Merged-chr2-159646122-2	chr2	159645628	159646628	+	842.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-301213.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	18.31	19.35	20.35	13.49	16.79	18.49	33.8	30.51	22.48
Merged-chr13-9380941-3	chr13	9380441	9381441	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	104416.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	58.35	39.17	37.0	53.98	26.12	22.51	33.8	23.88	16.24
Merged-chr2-18798937-3	chr2	18798445	18799445	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_131254)	TTS (NR_131254)	2873.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	4.0	3.23	1.85	6.07	3.27	4.82	8.45	0.44	2.5
Merged-chr9-102622622-3	chr9	102622031	102623031	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081122, intron 2 of 16)	intron (NM_001081122, intron 2 of 16)	3593.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	25.17	20.74	10.17	22.94	22.39	27.33	29.57	32.72	31.23
Merged-chr12-32640893-3	chr12	32640398	32641398	+	842.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179437.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	25.74	16.59	12.02	15.52	10.26	8.04	14.79	2.21	1.25
Merged-chr14-60284061-3	chr14	60283567	60284567	+	842.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 4 of 13)	L1_Mur3|LINE|L1	18862.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	85.24	134.55	62.9	75.57	67.18	80.38	91.89	145.92	90.56
Merged-chr2-144287350-3	chr2	144286851	144287851	+	842.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16447.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	6.29	4.61	3.7	6.07	3.73	1.61	4.22	3.98	3.75
Merged-chr5-4595192-2	chr5	4594699	4595699	+	842.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163017.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	4.58	2.76	0.0	5.4	6.06	3.22	4.22	7.96	2.5
Merged-chr16-49896347-2	chr16	49895852	49896852	+	842.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 6 of 9)	intron (NM_010581, intron 6 of 9)	40698.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	13.73	12.44	35.15	19.57	20.06	13.66	22.18	19.01	23.11
Merged-chr10-117221085-3	chr10	117220588	117221588	+	842.8444210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 2 of 6)	intron (NM_026570, intron 2 of 6)	3419.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	16.02	27.19	16.65	11.47	10.73	9.65	5.28	11.05	4.37
Merged-chr4-53118904-2	chr4	53118402	53119402	+	842.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	MIR|SINE|MIR	40993.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	67.5	44.24	26.82	87.71	41.05	43.4	80.27	66.33	57.46
Merged-chr8-120669038-3	chr8	120668497	120669497	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010926)	promoter-TSS (NM_010926)	677.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	184.77	183.85	150.77	193.64	183.34	168.8	210.18	190.13	125.53
Merged-chr18-75259285-3	chr18	75258787	75259787	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	38030.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	14.87	17.51	7.4	18.22	17.73	17.68	20.07	7.52	9.37
Merged-chr3-21961999-3	chr3	21961503	21962503	+	842.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114649.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	20.59	28.57	22.2	31.71	18.66	14.47	40.14	31.84	16.86
Merged-chr6-143168491-3	chr6	143167983	143168983	+	842.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	1253.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	57.21	76.95	30.52	49.25	38.25	33.76	58.09	64.11	23.11
Merged-chr6-28261013-3	chr6	28260530	28261530	+	842.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081678, intron 1 of 5)	CpG	571.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	36.04	19.81	29.6	51.28	8.86	30.54	42.25	14.15	23.11
Merged-chr9-32211569-3	chr9	32211067	32212067	+	842.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12682.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	9.15	8.75	3.7	6.07	7.93	12.86	6.34	2.21	6.25
Merged-chr2-167477233-3	chr2	167476724	167477724	+	842.7666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148929)	TTS (NM_148929)	-15421.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	53.2	33.64	43.47	41.83	33.59	48.23	48.58	38.91	28.1
Merged-chr2-166657304-1	chr2	166656804	166657804	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	56528.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	21.74	23.04	16.65	28.34	20.53	13.66	42.25	21.22	17.49
Merged-chr2-58281291-1	chr2	58280791	58281791	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040365, exon 3 of 4)	non-coding (NR_040365, exon 3 of 4)	4512.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	1.14	1.84	0.0	3.37	5.6	3.22	2.11	3.1	2.5
Merged-chr7-139684752-1	chr7	139684252	139685252	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-937.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	5.72	3.69	3.7	6.07	7.46	5.63	1.06	1.77	1.25
Merged-chr12-54203889-2	chr12	54203388	54204388	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028133)	promoter-TSS (NM_028133)	-14.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	6.29	1.38	0.0	2.7	3.27	1.61	2.11	0.88	1.87
Merged-chr4-130629513-2	chr4	130629019	130630019	+	842.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33802.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	1.14	0.92	0.0	3.37	1.4	6.43	3.17	3.54	1.25
Merged-chr17-35750056-3	chr17	35749596	35750596	+	842.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22354.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	10.3	13.82	9.25	5.4	3.73	4.82	191.17	142.38	51.84
Merged-chr10-81168988-3	chr10	81168479	81169479	+	842.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1259.0	NM_021501	59004.0	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	36.61	43.31	43.47	41.16	27.99	82.79	46.47	53.94	51.21
Merged-chr1-134513965-3	chr1	134513409	134514409	+	842.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19249.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	6.29	4.15	1.85	6.75	1.87	3.22	12.67	5.31	4.37
Merged-chr13-119366369-1	chr13	119365869	119366869	+	842.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008710, exon 12 of 17)	exon (NM_008710, exon 12 of 17)	42642.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	1.72	2.3	1.85	2.7	4.67	3.22	7.39	4.42	4.37
Merged-chr15-77358810-3	chr15	77358298	77359298	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40312.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.0	2.3	2.77	6.75	3.27	1.61	1.06	3.1	1.25
Merged-chr17-35897007-1	chr17	35896507	35897507	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001142744)	TTS (NM_001142744)	371.0	NM_001033630	69662.0	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	26.89	26.73	43.47	55.33	23.79	30.54	60.2	24.76	21.86
Merged-chr14-31205464-1	chr14	31204964	31205964	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347583, intron 1 of 13)	intron (NM_001347583, intron 1 of 13)	1362.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	64.07	38.71	37.0	56.0	30.79	57.87	42.25	43.77	23.73
Merged-chr2-25663519-1	chr2	25663019	25664019	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5567.0	NM_001042630	13863.0	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	10.3	7.37	8.32	8.1	5.6	9.65	19.01	8.84	3.75
Merged-chr13-35079788-3	chr13	35079269	35080269	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85625.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	48.05	56.68	66.6	22.27	18.66	33.76	39.08	22.55	45.59
Merged-chr4-154246664-1	chr4	154246164	154247164	+	842.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001162977, intron 5 of 36)	intron (NM_001162977, intron 5 of 36)	53231.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	6.29	1.84	2.77	1.35	0.93	3.22	1.06	3.1	3.12
Merged-chr11-83067770-1	chr11	83067270	83068270	+	842.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	MTC|LTR|ERVL-MaLR	2658.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	76.66	48.84	39.77	79.62	38.72	80.38	78.16	67.65	50.59
Merged-chr8-120760037-2	chr8	120759542	120760542	+	842.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	21403.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	12.59	5.53	5.55	14.17	8.4	3.22	4.22	6.19	6.25
Merged-chr10-100882304-3	chr10	100881808	100882808	+	842.6333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140673.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	21.74	23.5	13.87	47.23	20.99	15.27	30.63	47.75	19.98
Merged-chr13-117052964-3	chr13	117052462	117053462	+	842.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-27446.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	12.01	8.29	3.7	8.1	3.73	5.63	4.22	11.5	6.25
Merged-chr16-57571331-3	chr16	57570815	57571815	+	842.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177871, exon 2 of 2)	exon (NM_001177871, exon 2 of 2)	22073.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	140.73	129.94	53.65	130.9	70.91	73.14	90.83	103.47	61.83
Merged-chr9-70841201-3	chr9	70840695	70841695	+	842.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	93613.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	71.51	82.94	57.35	97.16	59.25	67.52	100.34	86.66	72.45
Merged-chr2-94165054-1	chr2	94164554	94165554	+	842.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7145.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	7.44	3.69	5.55	15.52	5.6	8.04	21.12	22.11	13.74
Merged-chr10-51528077-3	chr10	51527568	51528568	+	842.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	37170.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	189.35	316.1	171.12	236.15	242.58	170.4	294.68	382.47	141.14
Merged-chr11-87639363-3	chr11	87638854	87639854	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045527, intron 5 of 5)	CpG	22190.0	NM_001045527	327992.0	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	13.73	12.44	16.65	27.66	17.73	31.35	22.18	11.94	11.87
Merged-chr7-122289858-3	chr7	122289329	122290329	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 1 of 16)	CpG	704.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	48.62	43.31	50.87	61.4	55.51	47.42	45.42	41.56	25.61
Merged-chr18-5101538-3	chr18	5101052	5102052	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347449, intron 22 of 30)	MRLTR33|LTR|ERVK	54963.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	30.32	31.33	27.75	89.06	42.45	51.44	40.14	19.9	16.24
Merged-chr7-80786928-3	chr7	80786425	80787425	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	16406.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	39.47	53.91	47.17	73.54	53.18	53.85	65.48	62.79	44.34
Merged-chr4-132505462-3	chr4	132504961	132505961	+	842.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144907, intron 1 of 9)	intron (NM_144907, intron 1 of 9)	4995.0	NM_144907	230784.0	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	25.74	26.26	24.97	34.41	25.66	53.85	49.64	32.72	28.73
Merged-chr10-88719633-3	chr10	88719132	88720132	+	842.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11469.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	83.52	95.38	67.52	101.21	87.7	94.85	110.9	100.37	61.83
Merged-chr18-62182113-2	chr18	62181601	62182601	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	2001.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	69.79	96.3	52.72	66.8	48.05	60.28	80.27	80.92	74.32
Merged-chr5-124047199-2	chr5	124046704	124047704	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-14944.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	5.15	1.38	0.0	16.19	2.8	6.43	21.12	18.57	9.99
Merged-chr17-31005093-3	chr17	31004583	31005583	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 20 of 21)	intron (NM_177465, intron 20 of 21)	50400.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	30.89	35.02	38.85	34.41	19.13	50.64	59.15	67.21	45.59
Merged-chr7-49178363-1	chr7	49177863	49178863	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-16205.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	3.43	4.15	0.0	9.45	1.87	4.82	4.22	0.44	1.25
Merged-chr17-74159711-2	chr17	74159217	74160217	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111801.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	1.14	1.84	1.85	4.05	2.8	4.02	1.06	1.77	6.25
Merged-chr10-121477594-2	chr10	121477107	121478107	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1357.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	53.77	71.88	71.22	64.1	76.04	106.1	15.84	16.36	25.61
Merged-chr10-127731542-1	chr10	127731042	127732042	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009312, intron 6 of 6)	intron (NM_009312, intron 6 of 6)	6150.0	NM_009312	21334.0	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	7.44	2.3	0.92	3.37	1.4	7.23	3.17	1.33	5.0
Merged-chr12-86147459-1	chr12	86146959	86147959	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029601, intron 4 of 7)	L2b|LINE|L2	-21882.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	5.15	9.68	4.62	13.49	4.2	8.84	6.34	3.54	1.25
Merged-chr13-8644969-2	chr13	8644475	8645475	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	MIRb|SINE|MIR	226069.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	24.6	22.12	9.25	132.24	97.5	109.32	83.44	68.98	36.22
Merged-chr15-78271708-1	chr15	78271208	78272208	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13141.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	16.02	8.29	5.55	27.66	12.13	13.66	21.12	8.84	12.49
Merged-chr4-66861919-1	chr4	66861419	66862419	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34368.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	14.87	5.99	10.17	12.82	9.8	9.65	9.51	5.31	2.5
Merged-chr7-138398648-1	chr7	138398148	138399148	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183289)	promoter-TSS (NM_183289)	-918.0	NM_183289	70571.0	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	2.29	3.23	0.0	1.35	1.4	1.61	0.0	0.0	1.25
Merged-chr11-115054699-2	chr11	115054197	115055197	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172050, intron 2 of 3)	intron (NM_172050, intron 2 of 3)	-6402.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	24.6	17.97	42.55	11.47	4.67	25.72	7.39	8.4	9.37
Merged-chr13-41502527-2	chr13	41502029	41503029	+	842.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15169.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	36.04	24.88	32.37	33.74	30.79	32.15	20.07	18.57	13.74
Merged-chr12-24980142-2	chr12	24979646	24980646	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	intron (NM_001081378, intron 1 of 31)	5214.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	26.31	30.87	25.9	33.06	39.65	31.35	166.88	129.55	54.96
Merged-chr8-83297573-1	chr8	83297073	83298073	+	842.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009463, intron 5 of 5)	intron (NM_009463, intron 5 of 5)	7225.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	4.0	2.3	3.7	2.7	5.13	5.63	2.11	0.0	8.74
Merged-chr18-44387297-3	chr18	44386828	44387828	+	842.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	6828.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	33.75	47.0	20.35	12.82	9.8	20.9	20.07	14.59	25.61
Merged-chr10-117879434-2	chr10	117878861	117879861	+	842.4500119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33387.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	65.21	65.43	75.85	86.36	81.64	94.85	111.96	102.58	85.56
Merged-chr13-8645463-3	chr13	8644988	8645988	+	842.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 3 of 10)	intron (NR_110345, intron 3 of 10)	225556.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	20.02	17.51	11.1	116.05	88.64	91.63	44.36	43.33	30.6
Merged-chr2-181161658-3	chr2	181161162	181162162	+	842.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4647.0	NM_007906	13628.0	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	EEF1AL|EF-1-alpha-2|Eef1a|S1|STN|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	14.3	7.83	12.95	3.37	1.4	1.61	4.22	6.63	5.0
Merged-chr2-174675842-3	chr2	174675361	174676361	+	842.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	32327.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	0.57	0.46	0.0	2.02	1.87	0.0	2.11	2.21	2.5
Merged-chr5-5180393-2	chr5	5179844	5180844	+	842.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 5 of 14)	intron (NM_011074, intron 5 of 14)	85724.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.86	10.6	10.17	2.02	6.53	8.04	5.28	1.33	3.75
Merged-chrX-7576622-3	chrX	7576124	7577124	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029473, intron 1 of 2)	L2a|LINE|L2	-2343.0	NM_138605	54646.0	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	21.74	4.15	10.17	4.72	7.93	1.61	9.51	9.73	9.99
Merged-chr4-136891772-3	chr4	136891264	136892264	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007574, intron 2 of 2)	intron (NM_007574, intron 2 of 2)	1150.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	147.02	132.25	193.32	118.08	139.49	169.6	217.57	200.3	168.0
Merged-chr12-3818158-3	chr12	3817648	3818648	+	842.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	10988.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	36.61	18.89	23.12	48.58	21.93	24.92	61.26	49.52	15.61
Merged-chr19-38020373-3	chr19	38019876	38020876	+	842.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 3 of 53)	intron (NM_001302140, intron 3 of 53)	23201.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	32.61	26.26	8.32	37.11	17.26	22.51	55.98	46.87	31.85
Merged-chr9-44076928-3	chr9	44076430	44077430	+	842.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 2 of 12)	intron (NM_198092, intron 2 of 12)	7501.0	NM_016808	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	4.0	3.23	3.7	5.4	0.93	4.02	3.17	1.77	5.0
Merged-chr8-11466270-1	chr8	11465770	11466770	+	842.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-11659.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	104.11	114.27	113.77	104.58	139.49	108.51	129.91	118.5	81.19
Merged-chr12-111516986-1	chr12	111516486	111517486	+	842.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21115.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	5.15	2.3	7.4	2.02	2.8	2.41	3.17	1.33	3.75
Merged-chr16-35754969-3	chr16	35754476	35755476	+	842.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MTD|LTR|ERVL-MaLR	14380.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	32.61	40.09	19.42	49.25	36.39	34.56	55.98	64.11	32.48
Merged-chr1-92755423-3	chr1	92754906	92755906	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76239.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	10.3	8.29	4.62	4.72	7.46	15.27	3.17	4.42	0.62
Merged-chr19-21373532-3	chr19	21373016	21374016	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99145.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	6.29	3.69	3.7	6.07	5.13	1.61	5.28	6.19	2.5
Merged-chr15-25993539-3	chr15	25993034	25994034	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 4 of 5)	intron (NM_144523, intron 4 of 5)	9168.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	5.72	4.61	5.55	2.02	8.4	3.22	2.11	6.63	3.75
Merged-chr14-57713032-3	chr14	57712534	57713534	+	842.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 2 of 7)	intron (NM_015771, intron 2 of 7)	21384.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	11.44	7.83	1.85	13.49	5.6	14.47	12.67	12.38	8.74
Merged-chr15-58990309-1	chr15	58989809	58990809	+	842.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	56499.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	38.33	28.57	15.72	78.94	72.31	62.7	44.36	22.11	24.36
Merged-chr18-53243988-5	chr18	53243522	53244522	+	842.2352289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1640.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	76.08	85.25	90.65	111.33	66.71	69.13	99.28	99.49	88.06
Merged-chr9-109039146-3	chr9	109038643	109039643	+	842.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025858, intron 1 of 5)	intron (NM_025858, intron 1 of 5)	576.0	NM_025858	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	45.76	35.48	45.32	66.8	49.92	46.62	63.37	56.16	36.22
Merged-chr2-163838254-3	chr2	163837759	163838759	+	842.2000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15491.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	2.86	2.76	3.7	1.35	0.0	3.22	1.06	0.88	2.5
Merged-chr7-36730825-1	chr7	36730325	36731325	+	842.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	32707.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	6.86	3.23	5.55	12.14	11.66	17.68	1.06	0.44	0.62
Merged-chr4-149820744-1	chr4	149820244	149821244	+	842.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46477.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.72	1.38	3.7	6.07	7.0	3.22	2.11	1.77	3.75
Merged-chr10-13324234-2	chr10	13323739	13324739	+	842.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033257)	promoter-TSS (NM_001033257)	50.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	33.18	27.19	32.37	41.16	34.06	28.94	44.36	30.51	26.23
Merged-chr10-60280033-3	chr10	60279545	60280545	+	842.177795	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	B4A|SINE|B4	2417.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	76.08	78.79	95.27	89.06	88.17	110.12	164.76	174.66	69.95
Merged-chr15-7137110-3	chr15	7136630	7137630	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113386, intron 2 of 16)	intron (NM_001113386, intron 2 of 16)	-3412.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.72	2.3	7.4	2.7	4.67	6.43	4.22	1.77	5.0
Merged-chr9-85748503-3	chr9	85747998	85748998	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 1 of 27)	intron (NM_175371, intron 1 of 27)	836.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	106.4	111.51	58.27	119.43	76.51	86.01	129.91	118.94	75.57
Merged-chr17-13682819-3	chr17	13682332	13683332	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77709.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.15	4.61	0.0	4.72	3.73	0.0	6.34	5.75	0.0
Merged-chr14-77909097-3	chr14	77908589	77909589	+	842.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	MTD|LTR|ERVL-MaLR	4850.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	16.59	22.12	8.32	12.14	13.53	22.51	23.24	18.13	9.37
Merged-chr15-101979743-2	chr15	101979242	101980242	+	842.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	24600.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	49.77	83.86	70.3	43.86	54.11	94.85	80.27	80.03	40.59
Merged-chr10-30781226-2	chr10	30780745	30781745	+	842.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	22081.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	10.87	5.53	9.25	8.77	10.26	10.45	7.39	12.82	4.37
Merged-chr14-37109554-3	chr14	37109027	37110027	+	842.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206684, intron 1 of 2)	intron (NM_001206684, intron 1 of 2)	574.0	NM_001206684	70045.0	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830|Gpr15l	RIKEN cDNA 2610528A11 gene	protein-coding	6.86	7.83	12.02	5.4	16.33	14.47	9.51	2.21	13.12
Merged-chr13-60479975-3	chr13	60479498	60480498	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121949.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	33.18	42.39	27.75	10.12	4.2	11.25	36.97	35.37	23.73
Merged-chr4-26347443-3	chr4	26346940	26347940	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172865)	promoter-TSS (NM_172865)	-788.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	16.02	17.05	5.55	11.47	14.0	23.31	23.24	11.5	5.62
Merged-chr4-55797460-3	chr4	55796958	55797958	+	842.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-264983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	12.59	11.06	18.5	10.8	2.8	0.8	9.51	4.42	3.75
Merged-chr16-30790235-3	chr16	30789739	30790739	+	842.0944210000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190516.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	54.35	52.53	58.27	69.5	43.39	96.45	49.64	64.11	51.21
Merged-chr1-186221887-2	chr1	186221356	186222356	+	842.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104546.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	17.73	13.82	3.7	11.47	9.33	7.23	3.17	2.65	6.25
Merged-chr12-69127376-2	chr12	69126884	69127884	+	842.0833130000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31802.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	6.29	2.3	7.4	4.72	3.73	8.84	3.17	2.21	3.75
Merged-chr4-107803927-3	chr4	107803430	107804430	+	842.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	1671.0	NM_001080926	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	8.01	2.3	1.85	10.8	3.73	8.04	4.22	3.54	3.75
Merged-chr11-11820426-3	chr11	11819936	11820936	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016672, intron 12 of 14)	intron (NM_016672, intron 12 of 14)	-11474.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.72	3.69	0.0	4.05	2.33	1.61	5.28	3.1	2.5
Merged-chr17-33771113-3	chr17	33770607	33771607	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	10468.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	21.17	9.68	3.7	6.75	17.73	9.65	8.45	5.75	7.49
Merged-chr7-101060681-3	chr7	101060176	101061176	+	842.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-48099.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	21.74	20.74	18.5	41.16	26.12	24.11	16.9	18.57	14.99
Merged-chrX-159704732-3	chrX	159704175	159705175	+	842.0499880000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 2 of 17)	intron (NM_001135727, intron 2 of 17)	-3926.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	10.3	11.06	22.2	19.57	21.93	24.11	15.84	16.36	8.74
Merged-chr16-32651166-3	chr16	32650672	32651672	+	842.0277710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110147, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	6529.0	NM_016788	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	5.15	2.76	11.1	8.1	5.13	4.02	4.22	1.77	11.24
Merged-chr10-68130017-4	chr10	68129594	68130594	+	842.020874	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	148632.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	40.62	31.79	20.35	51.28	34.06	36.17	63.37	45.54	30.6
Merged-chr12-21269801-1	chr12	21269301	21270301	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008403)	TTS (NM_008403)	16483.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	5.15	9.22	5.55	9.45	4.67	4.82	5.28	0.88	3.75
Merged-chr6-135073838-1	chr6	135073338	135074338	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181444, intron 1 of 3)	intron (NM_181444, intron 1 of 3)	8176.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	4.58	2.3	1.85	2.7	0.0	2.41	3.17	3.54	7.49
Merged-chr10-60360925-1	chr10	60360425	60361425	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028732, intron 3 of 6)	intron (NM_028732, intron 3 of 6)	14074.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	22.88	22.12	24.97	30.36	30.32	35.37	17.96	15.92	18.74
Merged-chr9-40809869-3	chr9	40809346	40810346	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	8573.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	24.03	21.2	27.75	25.64	20.99	20.09	40.14	39.35	21.23
Merged-chr11-23023358-1	chr11	23022858	23023858	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028672, intron 3 of 3)	intron (NM_028672, intron 3 of 3)	9971.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	18.31	14.28	10.17	9.45	14.46	11.25	13.73	7.52	8.12
Merged-chr6-84661261-1	chr6	84660761	84661761	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	L1MD3|LINE|L1	-67353.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	14.3	11.98	9.25	22.27	13.06	10.45	9.51	15.92	10.62
Merged-chr4-33895198-3	chr4	33894702	33895702	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-29157.0	NM_001355020	12801.0	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	2.29	5.07	0.0	2.7	5.13	1.61	1.06	0.88	0.0
Merged-chr3-142881495-2	chr3	142881003	142882003	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152127)	promoter-TSS (NR_152127)	501.0	NM_178654	109333.0	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	309.48	272.78	320.03	275.28	219.73	264.45	268.27	188.36	200.47
Merged-chr7-83883229-2	chr7	83882690	83883690	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1151.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	64.07	57.6	149.84	70.17	67.64	70.73	107.73	74.73	70.57
Merged-chr15-6389590-1	chr15	6389090	6390090	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	2842.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	15.45	35.94	35.15	25.64	22.39	25.72	41.19	11.5	19.36
Merged-chr5-142400260-1	chr5	142399760	142400760	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-1237.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	23.45	30.41	6.47	18.89	24.72	14.47	29.57	52.62	30.6
Merged-chr6-110041657-1	chr6	110041157	110042157	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-603855.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	1.72	8.29	0.0	8.1	7.0	8.04	14.79	7.52	7.49
Merged-chr10-128910313-1	chr10	128909813	128910813	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007653, intron 1 of 7)	CpG	447.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	19.45	5.53	1.85	39.13	50.85	45.82	2.11	2.21	0.0
Merged-chr19-37692573-1	chr19	37692073	37693073	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001105201, intron 5 of 5)	intron (NM_001105201, intron 5 of 5)	-5235.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	10.3	8.75	3.7	12.14	8.86	6.43	3.17	3.1	1.25
Merged-chr14-64948987-1	chr14	64948487	64949487	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	intron (NM_177338, intron 1 of 9)	870.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	34.32	35.02	37.0	41.83	26.12	38.58	33.8	19.01	34.97
Merged-chr7-30422754-1	chr7	30422254	30423254	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172142)	promoter-TSS (NM_172142)	348.0	NM_001360907	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	384.42	415.63	237.71	349.5	347.08	245.16	310.52	353.29	181.11
Merged-chr18-67504143-3	chr18	67503644	67504644	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194355, intron 8 of 14)	intron (NM_194355, intron 8 of 14)	39295.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	12.01	11.98	0.0	21.59	24.72	14.47	9.51	6.19	4.37
Merged-chr16-90831232-1	chr16	90830732	90831732	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_133572, exon 1 of 6)	non-coding (NR_133572, exon 1 of 6)	373.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	1.14	5.99	3.7	15.52	4.2	3.22	4.22	6.63	3.75
Merged-chr5-64932849-1	chr5	64932349	64933349	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030682)	promoter-TSS (NM_030682)	-150.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	52.06	51.15	74.92	67.47	36.85	40.19	79.21	54.83	48.09
Merged-chr10-18195222-1	chr10	18194722	18195722	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	intron (NM_001195036, intron 3 of 20)	15668.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	12.59	15.21	5.55	20.24	12.13	21.7	12.67	6.63	11.24
Merged-chr3-129943987-1	chr3	129943487	129944487	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	26219.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	4.58	4.15	3.7	4.05	8.4	2.41	3.17	2.65	1.25
Merged-chr10-98972550-3	chr10	98972057	98973057	+	842.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 2 of 21)	intron (NM_001359507, intron 2 of 21)	57405.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	15.45	8.75	5.55	18.89	13.53	20.09	14.79	14.59	7.49
Merged-chr10-22390644-1	chr10	22390144	22391144	+	842.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-12169.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	1.14	0.46	0.0	0.0	1.87	0.0	12.67	7.07	8.12
Merged-chr3-75744265-1	chr3	75743765	75744765	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-88534.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	26.89	26.26	24.97	23.62	26.12	36.17	21.12	22.55	26.85
Merged-chr11-95837310-1	chr11	95836810	95837810	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-4985.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	30.32	16.59	24.05	24.96	20.06	44.21	51.75	34.49	32.48
Merged-chr1-36988629-1	chr1	36988129	36989129	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-49102.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.86	5.53	9.25	5.4	5.6	4.82	7.39	2.21	7.49
Merged-chr8-56862317-1	chr8	56861817	56862817	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	311183.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	2.29	5.53	1.85	3.37	9.33	0.0	3.17	4.42	0.0
Merged-chr13-74807202-1	chr13	74806702	74807702	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301153, intron 1 of 31)	intron (NM_001301153, intron 1 of 31)	758.0	NM_009817	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	17.73	14.28	17.57	26.99	34.52	20.09	29.57	27.41	9.99
Merged-chr6-129393412-1	chr6	129392912	129393912	+	842.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3885.0	NM_001204253	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	12.01	9.22	5.55	10.12	9.33	12.06	12.67	7.07	6.87
Merged-chr8-122556234-2	chr8	122555722	122556722	+	841.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4893.0	NM_001357349	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	36.61	47.46	58.27	53.98	55.51	90.83	83.44	89.76	52.46
Merged-chr9-115236474-3	chr9	115235983	115236983	+	841.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45587.0	NR_029430	111186.0	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	3.43	5.99	11.1	12.14	13.06	5.63	22.18	12.38	29.35
Merged-chr2-51014473-3	chr2	51013963	51014963	+	841.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104779.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	18.31	12.44	8.32	15.52	17.73	22.51	26.4	14.59	16.24
Merged-chr17-78245082-3	chr17	78244574	78245574	+	841.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	44826.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	38.9	45.16	24.05	36.43	32.19	26.53	24.29	33.16	16.24
Merged-chr3-88522264-3	chr3	88521764	88522764	+	841.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10131.0	NM_001029890	72640.0	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	4.58	6.45	0.0	6.07	3.73	0.0	5.28	4.86	2.5
Merged-chr9-90243121-2	chr9	90242629	90243629	+	841.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 2 of 12)	intron (NM_194334, intron 2 of 12)	27640.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	28.03	23.96	46.25	27.66	11.2	31.35	58.09	13.27	26.23
Merged-chr14-98956948-2	chr14	98956443	98957443	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89193.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	2.86	3.23	4.62	6.07	2.33	4.82	6.34	3.98	1.25
Merged-chr19-53420020-2	chr19	53419527	53420527	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29393.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	3.43	0.92	0.0	2.02	1.4	4.82	1.06	2.21	5.0
Merged-chr13-113322234-2	chr13	113321735	113322735	+	841.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112576.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	4.0	5.99	7.4	2.02	5.13	4.82	3.17	2.21	0.0
Merged-chr6-129103343-3	chr6	129102850	129103850	+	841.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2447.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	15.45	11.06	9.25	12.14	7.93	3.22	13.73	3.98	6.25
Merged-chr8-48110094-3	chr8	48109589	48110589	+	841.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161515)	promoter-TSS (NM_001161515)	76.0	NM_001161515	320685.0	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	4.0	3.23	2.77	6.07	3.73	8.04	2.11	1.77	3.75
Merged-chr16-94572568-3	chr16	94571936	94572936	+	841.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	1529.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	35.47	29.95	12.95	39.81	28.46	14.47	23.24	14.15	13.12
Merged-chr19-55655685-2	chr19	55655186	55656186	+	841.7666630000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	(CAGTG)n|Simple_repeat|Simple_repeat	46518.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	61.78	50.69	58.27	82.32	65.78	58.68	59.15	59.25	24.98
Merged-chr7-35054981-2	chr7	35054549	35055549	+	841.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	1517.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	109.83	121.19	66.6	97.83	86.3	81.18	125.69	134.42	66.82
Merged-chr11-69948384-4	chr11	69947918	69948918	+	841.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009204)	promoter-TSS (NM_009204)	-221.0	NM_001359114	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	10.87	7.37	4.62	10.12	1.87	5.63	11.62	5.31	4.37
Merged-chr13-12106829-1	chr13	12106329	12107329	+	841.75	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_023868, exon 1 of 105)	5' UTR (NM_023868, exon 1 of 105)	116.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	6.86	1.38	1.85	3.37	2.8	1.61	1.06	0.88	0.0
Merged-chr13-58452402-3	chr13	58451905	58452905	+	841.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49062.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	53.2	47.92	21.27	60.72	45.72	28.94	80.27	69.42	21.23
Merged-chr16-13902306-3	chr16	13901841	13902841	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289562)	promoter-TSS (NM_001289562)	804.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	140.73	111.51	74.0	120.77	100.77	69.93	132.02	103.47	82.44
Merged-chr9-99139635-3	chr9	99139126	99140126	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	CpG	585.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	111.55	116.58	119.32	126.85	106.36	102.88	167.93	101.26	72.45
Merged-chr9-78430666-3	chr9	78430143	78431143	+	841.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_125721, exon 5 of 5)	non-coding (NR_125721, exon 5 of 5)	12594.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	15.45	19.35	11.1	26.99	26.12	23.31	16.9	16.8	27.48
Merged-chr8-41298545-3	chr8	41298046	41299046	+	841.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 22 of 37)	L1MA5A|LINE|L1	58787.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	6.86	10.14	1.85	8.1	5.6	7.23	26.4	21.67	8.74
Merged-chr10-78069763-3	chr10	78069299	78070299	+	841.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015790, intron 1 of 6)	CpG	431.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	19.45	11.52	23.12	20.92	18.19	13.66	19.01	16.8	12.49
Merged-chr2-167293512-3	chr2	167292986	167293986	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52949.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	11.44	8.29	1.85	43.18	21.93	8.04	12.67	5.31	10.62
Merged-chr7-30563709-3	chr7	30563220	30564220	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025498)	promoter-TSS (NM_025498)	380.0	NM_170760	233073.0	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	79.52	127.64	100.82	64.77	120.83	98.06	110.9	110.54	73.07
Merged-chr3-145105121-1	chr3	145104621	145105621	+	841.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6015.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	23.45	15.67	12.95	35.09	16.33	9.65	16.9	13.27	11.24
Merged-chr6-135951837-1	chr6	135951337	135952337	+	841.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	221674.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	1.72	0.92	6.47	1.35	3.73	3.22	6.34	4.86	7.49
Merged-chr10-97283014-3	chr10	97282514	97283514	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-140464.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	14.3	10.6	11.1	13.49	14.0	14.47	9.51	6.19	14.99
Merged-chr8-120364569-3	chr8	120364054	120365054	+	841.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124312.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	81.8	66.81	61.05	120.77	112.9	78.77	111.96	91.53	32.48
Merged-chr19-46899512-2	chr19	46899010	46900010	+	841.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	62841.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	16.02	6.91	7.4	14.17	19.13	11.25	3.17	7.52	8.74
Merged-chr11-44392712-2	chr11	44392214	44393214	+	841.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7349.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	17.73	7.37	7.4	14.84	9.33	12.86	6.34	4.86	6.87
Merged-chr6-39379930-3	chr6	39379407	39380407	+	841.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1446.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	96.11	88.01	64.75	97.16	61.58	35.37	76.05	53.94	49.34
Merged-chr10-7833365-2	chr10	7832862	7833862	+	841.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 1 of 5)	L1MB3|LINE|L1	892.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	75.51	96.76	89.72	105.26	63.45	62.7	74.99	76.94	60.58
Merged-chr5-103755514-2	chr5	103755040	103756040	+	841.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	967.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	107.55	110.13	42.55	74.89	45.72	43.4	82.38	73.84	41.84
Merged-chr17-70999346-2	chr17	70998843	70999843	+	841.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026064, intron 1 of 3)	intron (NM_026064, intron 1 of 3)	-1331.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	25.74	21.2	17.57	25.64	13.53	12.86	19.01	25.65	15.61
Merged-chr6-4618115-3	chr6	4617616	4618616	+	841.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145398, intron 5 of 17)	intron (NM_145398, intron 5 of 17)	17050.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	12.01	6.45	1.85	4.05	7.0	11.25	7.39	3.54	5.62
Merged-chr7-89243908-2	chr7	89243407	89244407	+	841.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	94880.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	40.04	41.93	57.35	31.71	38.25	34.56	36.97	43.33	31.23
Merged-chr1-87649075-4	chr1	87648618	87649618	+	841.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	28806.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	85.24	105.06	74.0	74.22	46.18	85.2	83.44	76.94	79.94
Merged-chr7-109480993-3	chr7	109480508	109481508	+	841.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181853, exon 7 of 20)	exon (NM_181853, exon 7 of 20)	12730.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	21.74	23.96	21.27	7.42	7.93	8.84	29.57	34.05	19.36
Merged-chr1-185350020-2	chr1	185349528	185350528	+	841.5833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347210, intron 7 of 9)	intron (NM_001347210, intron 7 of 9)	-13016.0	NM_029735	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	12.59	13.82	14.8	29.69	19.13	24.11	0.0	2.65	0.0
Merged-chr8-46896840-3	chr8	46896326	46897326	+	841.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-90061.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	12.01	10.14	16.65	13.49	9.33	5.63	5.28	3.98	14.36
Merged-chr6-89362748-5	chr6	89362230	89363230	+	841.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008881)	promoter-TSS (NM_008881)	-117.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	36.61	15.67	23.12	29.01	7.93	12.86	41.19	6.19	5.62
Merged-chr4-46308055-1	chr4	46307555	46308555	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-36139.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	1.72	3.23	0.0	1.35	2.33	1.61	4.22	0.44	1.25
Merged-chr10-9136283-1	chr10	9135783	9136783	+	841.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-250213.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.72	2.76	7.4	0.67	1.4	0.8	5.28	1.77	1.25
Merged-chr8-94364888-3	chr8	94364386	94365386	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-21543.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	157.89	144.69	95.27	141.69	97.03	104.49	111.96	94.18	58.71
Merged-chr8-119339507-1	chr8	119339007	119340007	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5031.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	17.73	18.89	22.2	10.8	19.59	16.88	22.18	15.48	24.98
Merged-chr10-81303959-1	chr10	81303459	81304459	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	10996.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	20.02	18.43	18.5	30.36	19.13	16.88	15.84	11.5	8.74
Merged-chr16-45283277-1	chr16	45282777	45283777	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58940.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	3.43	0.46	4.62	5.4	4.2	0.0	5.28	3.54	2.5
Merged-chr10-122680100-2	chr10	122679608	122680608	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106182)	TTS (NR_106182)	793.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	249.99	269.1	208.11	264.49	266.38	181.66	304.18	360.37	164.88
Merged-chr15-40944101-1	chr15	40943601	40944601	+	841.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356998, intron 3 of 6)	intron (NM_001356998, intron 3 of 6)	-229600.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	1.14	3.23	1.85	5.4	3.27	0.8	2.11	1.77	3.12
Merged-chr19-41088458-3	chr19	41087989	41088989	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011904, intron 19 of 20)	intron (NM_011904, intron 19 of 20)	-11376.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	17.16	8.29	3.7	4.72	4.2	8.84	11.62	6.63	12.49
Merged-chr6-30460093-3	chr6	30459591	30460591	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131049)	promoter-TSS (NR_131049)	-894.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	10.87	3.69	1.85	6.07	3.73	9.65	7.39	5.75	1.25
Merged-chr17-65605082-3	chr17	65604570	65605570	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	Tigger7|DNA|TcMar-Tigger	8485.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	42.9	49.76	44.4	32.39	31.72	46.62	62.31	67.21	24.36
Merged-chr10-93375496-2	chr10	93374993	93375993	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39282.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	37.76	33.18	21.27	62.75	28.92	38.58	5.28	8.4	6.25
Merged-chr6-17643010-3	chr6	17642529	17643529	+	841.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	6019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	29.17	54.83	34.22	54.65	31.26	46.62	59.15	64.56	34.35
Merged-chr10-110733511-3	chr10	110733021	110734021	+	841.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11918.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.0	3.23	0.0	4.72	4.2	0.0	2.11	0.88	3.75
Merged-chr1-92911159-3	chr1	92910630	92911630	+	841.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138577)	promoter-TSS (NR_138577)	305.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	76.08	29.95	67.52	69.5	29.86	57.07	55.98	22.99	19.36
Merged-chr5-62753018-3	chr5	62752520	62753520	+	841.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	13157.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	46.34	58.52	20.35	83.66	57.38	18.49	51.75	52.62	13.12
Merged-chr7-126583444-3	chr7	126582948	126583948	+	841.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001329789)	promoter-TSS (NM_001329789)	-212.0	NM_009907	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	213.95	241.91	157.24	246.95	266.38	229.08	290.45	324.99	131.15
Merged-chr10-30660746-3	chr10	30660249	30661249	+	841.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 10 of 14)	intron (NM_001358842, intron 10 of 14)	-4882.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	9.72	5.99	11.1	14.17	7.0	11.25	13.73	8.84	9.99
Merged-chr4-106804429-3	chr4	106803923	106804923	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347159, intron 1 of 15)	intron (NM_001347159, intron 1 of 15)	584.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	12.59	6.45	7.4	11.47	4.67	4.02	6.34	3.54	4.37
Merged-chr8-104630837-3	chr8	104630362	104631362	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019662, exon 2 of 5)	exon (NM_019662, exon 2 of 5)	459.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	23.45	23.5	26.82	20.24	8.86	14.47	21.12	10.61	19.36
Merged-chr1-170176962-3	chr1	170176451	170177451	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1987.0	NM_001305045	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	15.45	11.52	11.1	16.19	16.33	20.09	17.96	18.57	14.36
Merged-chr17-50330410-3	chr17	50329908	50330908	+	841.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36788.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	12.59	12.9	1.85	20.92	10.26	8.84	9.51	3.1	3.75
Merged-chr15-8633794-2	chr15	8633260	8634260	+	841.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148938)	TTS (NM_148938)	77047.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	20.59	20.27	22.2	18.89	9.33	7.23	23.24	23.88	24.36
Merged-chr13-52579645-3	chr13	52579135	52580135	+	841.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3802.0	NM_001198977	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	74.94	52.53	48.1	75.57	48.52	64.3	71.82	50.41	41.84
Merged-chr1-78713249-1	chr1	78712749	78713749	+	841.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	54809.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	7.44	8.75	1.85	4.72	10.26	4.82	4.22	3.1	2.5
Merged-chr7-97788591-6	chr7	97788081	97789081	+	841.39447	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357364)	promoter-TSS (NM_001357364)	40.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	101.25	62.67	61.05	80.29	53.65	30.54	69.71	53.5	33.72
Merged-chr12-80668519-3	chr12	80668028	80669028	+	841.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026244, intron 3 of 6)	intron (NM_026244, intron 3 of 6)	23938.0	NR_037995	68354.0	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	38.9	38.25	32.37	28.34	24.72	27.33	17.96	22.55	30.6
Merged-chr13-12257245-3	chr13	12256732	12257732	+	841.3833619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	881.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	200.79	239.61	119.32	186.22	213.66	122.18	231.3	309.96	123.66
Merged-chr2-181496308-5	chr2	181495768	181496768	+	841.353333	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291201)	promoter-TSS (NM_001291201)	-874.0	NM_001291203	66314.0	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	105.83	104.6	104.52	63.42	76.51	57.07	136.25	164.49	76.82
Merged-chr10-67081800-2	chr10	67081298	67082298	+	841.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 1 of 7)	intron (NM_178606, intron 1 of 7)	15190.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	24.03	11.06	18.5	30.36	11.66	9.65	13.73	8.84	6.25
Merged-chr7-67551439-2	chr7	67550935	67551935	+	841.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	93801.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	4.58	6.45	7.4	8.77	4.2	14.47	2.11	4.42	1.25
Merged-chr1-71103666-1	chr1	71103166	71104166	+	841.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-694.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	50.34	74.19	39.77	53.98	73.24	51.44	96.11	125.13	30.6
Merged-chr4-156216362-3	chr4	156215887	156216887	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172417, intron 1 of 3)	intron (NM_172417, intron 1 of 3)	460.0	NM_172417	74183.0	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	82.95	56.22	37.92	75.57	57.38	25.72	91.89	51.73	34.97
Merged-chr17-67342203-3	chr17	67341695	67342695	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	RMER15|LTR|ERVL	12264.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	75.51	83.4	60.12	126.85	97.5	88.42	136.25	119.83	51.21
Merged-chr1-94078503-3	chr1	94078002	94079002	+	841.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-25949.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	6.29	5.07	4.62	7.42	7.0	8.04	3.17	2.65	3.12
Merged-chr5-72230804-3	chr5	72230307	72231307	+	841.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	27464.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	36.04	46.08	37.0	31.04	26.59	46.62	44.36	60.58	26.85
Merged-chr3-136253043-3	chr3	136252543	136253543	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 3 of 16)	intron (NM_001033350, intron 3 of 16)	73023.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	11.44	5.07	9.25	14.17	8.4	8.84	10.56	8.84	13.12
Merged-chr7-141370136-3	chr7	141369634	141370634	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5024.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	87.52	128.1	97.12	92.44	104.5	100.47	124.63	141.49	96.18
Merged-chr1-92992436-3	chr1	92991923	92992923	+	841.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	13520.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	8.01	3.23	18.5	13.49	6.06	4.82	8.45	6.19	1.25
Merged-chr10-13961672-3	chr10	13961171	13962171	+	841.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4404.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.58	3.23	7.4	11.47	2.8	4.02	9.51	7.07	0.0
Merged-chr18-50074470-1	chr18	50073970	50074970	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	L2a|LINE|L2	-20808.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	14.87	9.68	11.1	22.27	7.93	12.06	11.62	4.42	8.12
Merged-chr6-94045337-2	chr6	94044837	94045837	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	RMER15|LTR|ERVL	-131647.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.29	5.53	0.0	11.47	6.06	3.22	4.22	0.44	3.12
Merged-chr17-28522703-3	chr17	28522218	28523218	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8143.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	18.31	27.19	26.82	26.31	20.99	28.13	8.45	11.05	20.61
Merged-chr2-102850000-1	chr2	102849500	102850500	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	51665.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	11.44	9.68	29.6	25.64	15.86	29.74	9.51	6.19	3.75
Merged-chr15-88101597-2	chr15	88101080	88102080	+	841.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-213294.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	15.45	16.59	5.55	20.92	26.12	12.06	0.0	1.33	0.0
Merged-chr15-88178621-1	chr15	88178121	88179121	+	841.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136253.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	4.0	3.23	7.4	1.35	2.33	3.22	3.17	1.33	2.5
Merged-chr10-20673921-3	chr10	20673420	20674420	+	841.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	51158.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	38.33	43.31	46.25	91.76	97.03	105.3	10.56	13.71	19.36
Merged-chr11-111101886-3	chr11	111101403	111102403	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35739.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	11.44	16.59	14.8	18.89	20.53	16.88	21.12	21.22	10.62
Merged-chr11-105590077-3	chr11	105589605	105590605	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_181071, exon 1 of 26)	5' UTR (NM_181071, exon 1 of 26)	119.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	173.9	161.74	147.07	215.23	159.08	136.64	213.35	156.97	87.43
Merged-chr13-23720993-3	chr13	23720492	23721492	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-10138.0	NM_010424	15216.0	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	20.59	22.12	18.5	28.34	14.0	31.35	16.9	21.67	15.61
Merged-chr8-70755187-3	chr8	70754687	70755687	+	841.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166399, intron 1 of 4)	CpG	508.0	NM_001166399	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	133.86	123.03	115.62	250.32	169.81	173.62	138.36	192.34	103.67
Merged-chr11-68866008-2	chr11	68865503	68866503	+	841.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12872.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	95.53	75.57	50.87	115.38	58.31	65.91	91.89	91.09	64.33
Merged-chr6-113750296-3	chr6	113749846	113750846	+	841.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-9665.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	46.91	60.82	45.32	43.86	52.72	88.42	94.0	105.68	62.45
Merged-chr8-40890398-1	chr8	40889898	40890898	+	841.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 1 of 11)	MLT1B|LTR|ERVL-MaLR	28031.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	4.0	1.38	5.55	5.4	2.8	0.0	7.39	3.54	2.5
Merged-chr12-76196160-3	chr12	76195654	76196654	+	841.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18895.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	14.87	9.68	3.7	5.4	7.0	8.04	7.39	5.31	1.25
Merged-chr10-60246732-3	chr10	60246207	60247207	+	841.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27447.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	6.86	5.99	1.85	6.75	3.73	6.43	7.39	7.96	5.62
Merged-chr5-123391539-3	chr5	123391047	123392047	+	841.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-3251.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	44.62	26.73	28.67	49.25	23.79	23.31	50.7	26.53	14.36
Merged-chr1-87873228-3	chr1	87872730	87873730	+	841.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177646, intron 1 of 29)	intron (NM_177646, intron 1 of 29)	-18931.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	4.58	2.3	0.0	9.45	4.67	11.25	8.45	2.65	1.87
Merged-chr9-58552861-3	chr9	58552381	58553381	+	841.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11941.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	8.01	11.06	0.0	20.24	9.33	12.86	11.62	11.05	8.74
Merged-chr2-52966417-3	chr2	52965900	52966900	+	841.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	108532.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	49.2	30.87	24.97	49.25	27.06	50.64	44.36	29.63	35.6
Merged-chr2-180120284-3	chr2	180119792	180120792	+	841.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	926.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	71.51	88.93	65.67	66.12	68.58	70.73	46.47	42.01	24.98
Merged-chr11-23688291-3	chr11	23687788	23688788	+	841.0610960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 4 of 17)	ID4_|SINE|ID	22312.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	38.33	47.46	39.77	45.88	41.99	51.44	67.6	76.94	36.22
Merged-chr8-128168163-3	chr8	128167666	128168666	+	841.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	110059.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	8.58	6.91	5.55	15.52	7.46	3.22	16.9	24.76	6.87
Merged-chr2-60175359-1	chr2	60174859	60175859	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34577.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	9.15	3.69	7.4	10.8	8.86	9.65	10.56	7.96	6.25
Merged-chr9-51076683-1	chr9	51076183	51077183	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	411.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	18.88	11.52	12.02	18.89	13.06	12.06	10.56	5.75	1.25
Merged-chr14-77911600-3	chr14	77911076	77912076	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	7337.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	29.75	40.09	28.67	27.66	27.99	45.82	50.7	34.49	56.83
Merged-chr5-98692225-1	chr5	98691725	98692725	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 3 of 5)	MLT1C|LTR|ERVL-MaLR	-162190.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	6.86	2.3	3.7	2.02	3.27	3.22	1.06	3.54	5.0
Merged-chr2-45102288-1	chr2	45101788	45102788	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7989.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	39.47	42.39	52.72	42.51	28.92	33.76	51.75	30.07	49.96
Merged-chr1-121329581-1	chr1	121329081	121330081	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178082, intron 1 of 5)	MTEb|LTR|ERVL-MaLR	-1557.0	NM_133748	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	7.44	8.29	3.7	39.81	37.79	33.76	36.97	29.18	23.73
Merged-chr7-101466370-1	chr7	101465870	101466870	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9006.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	32.04	20.27	16.65	87.71	54.11	44.21	14.79	6.63	3.75
Merged-chr11-4974719-2	chr11	4974256	4975256	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-12068.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	17.16	20.27	10.17	22.94	10.26	17.68	8.45	9.73	16.86
Merged-chr2-34773326-1	chr2	34772826	34773826	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163434, intron 4 of 8)	intron (NM_001163434, intron 4 of 8)	1236.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	109.26	161.74	61.97	134.27	76.97	55.46	108.79	110.98	68.07
Merged-chr10-35348945-1	chr10	35348445	35349445	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	865545.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	5.72	4.15	0.92	2.7	7.0	4.82	7.39	9.73	3.12
Merged-chr10-21845490-1	chr10	21844990	21845990	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-36694.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	3.43	5.99	3.7	6.75	1.87	4.82	1.06	8.4	2.5
Merged-chr4-134558032-2	chr4	134557513	134558513	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5847.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	22.31	17.51	17.57	29.01	19.59	17.68	16.9	12.38	11.24
Merged-chr15-103366118-1	chr15	103365618	103366618	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	CpG	673.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	107.55	99.07	115.62	63.42	55.51	111.73	81.33	80.03	72.45
Merged-chr5-113636485-2	chr5	113635998	113636998	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	7105.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	107.55	102.75	78.62	101.21	121.29	109.32	171.1	146.8	88.06
Merged-chr3-96239615-2	chr3	96239107	96240107	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178216)	promoter-TSS (NM_178216)	-465.0	NM_178216	15077.0	Mm.422680	NM_178216	ENSMUSG00000093769	Hist2h3c1	BE691662|H3-615|H3f2|Hist2h3ca1	histone cluster 2, H3c1	protein-coding	68.65	63.59	93.42	61.4	58.78	86.01	34.85	34.93	39.35
Merged-chr19-45958725-2	chr19	45958227	45959227	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 9 of 25)	intron (NM_198296, intron 9 of 25)	-39410.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	40.62	58.52	56.42	53.98	31.72	53.85	101.39	107.45	61.2
Merged-chr13-104976018-1	chr13	104975518	104976518	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 3 of 5)	intron (NM_029879, intron 3 of 5)	78912.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	5.15	2.3	3.7	8.1	3.27	1.61	2.11	2.65	0.0
Merged-chr11-101763866-1	chr11	101763366	101764366	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 19 of 22)	intron (NM_144831, intron 19 of 22)	21444.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	4.58	6.91	3.7	7.42	7.46	5.63	7.39	3.54	2.5
Merged-chr17-47925483-1	chr17	47924983	47925983	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001110824)	promoter-TSS (NM_001110824)	-851.0	NM_001110825	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	1.14	1.38	5.55	7.42	3.27	1.61	7.39	1.33	3.75
Merged-chr1-148821706-2	chr1	148821231	148822231	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1100708.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	1.72	3.69	3.7	6.07	7.46	6.43	7.39	7.52	5.0
Merged-chr2-14228702-3	chr2	14228192	14229192	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008625)	promoter-TSS (NM_008625)	-722.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	86.95	100.45	95.27	109.98	83.04	90.83	85.55	77.82	84.94
Merged-chr7-39484588-1	chr7	39484088	39485088	+	841.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-33178.0	NM_001004139	70227.0	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	1.72	0.46	0.0	4.05	1.4	2.41	4.22	5.75	1.25
Merged-chr6-72550885-1	chr6	72550385	72551385	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	L3|LINE|CR1	1238.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	8.01	21.2	17.57	31.71	19.59	56.27	10.56	9.73	23.73
Merged-chr6-119883342-2	chr6	119882854	119883854	+	841.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19344.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	10.87	5.99	1.85	3.37	4.2	3.22	2.11	1.33	1.25
Merged-chr14-122297052-1	chr14	122296552	122297552	+	841.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-63414.0	NR_015532	68245.0	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	3.43	3.69	14.8	6.07	8.86	0.8	8.45	5.75	6.87
Merged-chr3-94997111-3	chr3	94996611	94997611	+	840.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293715, intron 8 of 11)	intron (NM_001293715, intron 8 of 11)	-7057.0	NR_105980	102465613.0		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	7.44	7.37	4.62	5.4	4.2	11.25	9.51	5.31	5.0
Merged-chr15-89078451-4	chr15	89078019	89079019	+	840.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026485, intron 1 of 9)	intron (NM_026485, intron 1 of 9)	2455.0	NM_001355617	67976.0	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	37.76	37.32	28.67	47.23	31.26	32.15	48.58	52.62	15.61
Merged-chr3-51648493-3	chr3	51647994	51648994	+	840.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12685.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.29	3.69	1.85	3.37	1.4	3.22	0.0	2.21	2.5
Merged-chr1-152808424-3	chr1	152807944	152808944	+	840.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010877, intron 2 of 15)	intron (NM_010877, intron 2 of 15)	8291.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	275.73	316.1	238.64	232.1	309.3	208.98	299.96	411.66	222.33
Merged-chr10-122007893-3	chr10	122007389	122008389	+	840.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	39426.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	10.87	6.45	2.77	7.42	6.06	6.43	1.06	3.54	2.5
Merged-chr14-75837683-3	chr14	75837187	75838187	+	840.92218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	7277.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	17.16	10.14	10.17	23.62	5.6	17.68	20.07	10.61	9.37
Merged-chr10-81299724-2	chr10	81299298	81300298	+	840.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	6835.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	89.81	81.56	82.32	91.09	64.38	65.91	52.81	53.06	30.6
Merged-chr7-107259342-2	chr7	107258845	107259845	+	840.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49900.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	9.72	14.75	7.4	11.47	12.6	16.08	6.34	2.65	3.75
Merged-chr4-59261240-2	chr4	59260744	59261744	+	840.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	1193.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	10.3	2.76	1.85	10.8	3.27	8.84	9.51	9.29	6.25
Merged-chr10-127167447-3	chr10	127166948	127167948	+	840.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027739, intron 3 of 9)	intron (NM_027739, intron 3 of 9)	1617.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	1.72	1.84	3.7	4.05	2.33	1.61	6.34	0.44	5.0
Merged-chr16-26035715-3	chr16	26035208	26036208	+	840.8777470000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70076.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	26.89	35.02	29.6	29.69	36.39	33.76	23.24	31.84	33.72
Merged-chr11-90492275-3	chr11	90491785	90492785	+	840.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011505, intron 17 of 17)	intron (NM_011505, intron 17 of 17)	-101368.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	51.48	40.09	35.15	21.59	19.59	20.9	21.12	44.66	11.24
Merged-chr9-118856852-3	chr9	118856353	118857353	+	840.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-69683.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	24.03	16.13	21.27	48.58	27.52	11.25	29.57	25.65	16.86
Merged-chr6-113625304-2	chr6	113624847	113625847	+	840.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009507, intron 1 of 2)	B1_Mm|SINE|Alu	1326.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	20.59	14.28	6.47	11.47	9.8	9.65	13.73	15.03	10.62
Merged-chr9-110841610-2	chr9	110841121	110842121	+	840.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153172)	TTS (NM_153172)	-2885.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	16.02	15.21	10.17	12.14	14.0	25.72	22.18	14.15	13.12
Merged-chr15-101335120-1	chr15	101334620	101335620	+	840.8333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34232.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	8.01	6.45	12.02	5.4	5.13	4.82	5.28	3.98	3.75
Merged-chr7-29126724-3	chr7	29126220	29127220	+	840.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1569.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	3.43	1.38	5.55	4.72	0.47	0.0	0.0	0.88	3.12
Merged-chr10-8948422-1	chr10	8947922	8948922	+	840.8333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62352.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.01	5.07	3.7	2.7	7.0	0.0	8.45	7.96	6.25
Merged-chr17-84128509-3	chr17	84128012	84129012	+	840.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	49852.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	18.88	13.36	24.97	20.92	14.93	31.35	24.29	8.84	31.85
Merged-chr15-59389399-3	chr15	59388918	59389918	+	840.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	15220.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	11.44	12.44	16.65	18.22	11.66	15.27	12.67	3.1	8.74
Merged-chr11-63908680-3	chr11	63908182	63909182	+	840.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	13602.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	26.89	37.78	24.97	6.75	3.73	5.63	29.57	29.63	35.6
Merged-chr7-19458241-3	chr7	19457759	19458759	+	840.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172279, intron 1 of 16)	CpG	235.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	72.65	43.77	69.37	61.4	63.91	73.95	111.96	84.45	66.2
Merged-chr5-64371792-3	chr5	64371298	64372298	+	840.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96144.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	27.46	50.69	49.95	45.21	36.39	51.44	52.81	35.82	32.48
Merged-chr13-5868986-2	chr13	5868476	5869476	+	840.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	7487.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	41.76	57.14	25.9	38.46	23.79	43.4	51.75	41.12	18.74
Merged-chr11-34737400-2	chr11	34736901	34737901	+	840.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 2 of 51)	L1M3|LINE|L1	46504.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	2.29	7.37	3.7	14.84	11.2	11.25	13.73	9.73	7.49
Merged-chr7-25740024-2	chr7	25739519	25740519	+	840.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178089, intron 7 of 7)	intron (NM_178089, intron 7 of 7)	14740.0	NM_144922	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	22.88	23.5	31.45	26.31	21.93	24.92	14.79	15.03	26.85
Merged-chr6-71444377-2	chr6	71443867	71444867	+	840.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3730.0	NM_024288	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	40.62	35.02	43.47	36.43	26.59	73.14	51.75	51.73	36.85
Merged-chr12-26465778-3	chr12	26465290	26466290	+	840.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-3425.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	19.45	20.27	13.87	14.17	7.93	16.88	13.73	12.38	7.49
Merged-chr8-31097196-3	chr8	31096699	31097699	+	840.7333369999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357223)	TTS (NM_001357223)	5549.0	NM_001357223	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.57	1.38	1.85	1.35	5.13	6.43	3.17	0.0	1.87
Merged-chr11-61861175-3	chr11	61860671	61861671	+	840.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie1a|DNA|hAT-Charlie	-6079.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	109.83	98.61	135.04	125.5	75.11	88.42	115.12	121.6	64.95
Merged-chr17-62516341-3	chr17	62515839	62516839	+	840.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	364978.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.0	5.99	0.0	4.72	5.6	4.82	8.45	4.42	4.37
Merged-chr19-9986324-3	chr19	9985817	9986817	+	840.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011913, exon 11 of 12)	exon (NM_011913, exon 11 of 12)	3671.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	38.33	23.96	21.27	45.21	41.05	40.19	32.74	25.2	17.49
Merged-chr6-66929854-3	chr6	66929344	66930344	+	840.6889039999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177556, intron 2 of 3)	Lx8|LINE|L1	32953.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	8.01	2.3	1.85	7.42	1.87	0.8	6.34	4.42	1.25
Merged-chr8-79029375-3	chr8	79028945	79029945	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	G-rich|Low_complexity|Low_complexity	1008.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	21.17	16.13	26.82	68.82	49.45	53.85	13.73	4.42	2.5
Merged-chr8-41138701-1	chr8	41138201	41139201	+	840.6666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NM_001005863	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.57	1.38	3.7	7.42	0.93	1.61	6.34	3.54	1.25
Merged-chr11-53444063-3	chr11	53443569	53444569	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	10783.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	4.0	5.99	1.85	7.42	4.2	2.41	6.34	1.77	9.37
Merged-chr14-32781656-3	chr14	32781146	32782146	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4317.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	18.31	11.98	8.32	14.84	8.4	15.27	22.18	18.13	4.37
Merged-chr7-122219610-3	chr7	122219094	122220094	+	840.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027363)	promoter-TSS (NM_027363)	98.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	30.89	36.86	56.42	53.3	30.32	73.95	81.33	57.92	45.59
Merged-chr2-20962003-1	chr2	20961503	20962503	+	840.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	5718.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	9.15	6.45	1.85	20.92	21.46	12.86	15.84	22.11	13.12
Merged-chr17-73951172-2	chr17	73950681	73951681	+	840.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011723)	promoter-TSS (NM_011723)	-985.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	44.05	76.49	67.52	45.21	51.78	78.77	66.54	95.51	83.69
Merged-chr3-107101948-3	chr3	107101437	107102437	+	840.6222529999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008417, intron 1 of 2)	CpG	370.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	20.59	17.97	49.95	51.95	70.91	58.68	115.12	85.78	48.71
Merged-chr6-145793429-3	chr6	145792939	145793939	+	840.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamTip2|DNA|hAT-Tip100	-14944.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	8.01	3.23	0.0	6.07	5.6	0.0	3.17	5.75	5.62
Merged-chr5-123893738-3	chr5	123893232	123894232	+	840.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	-13543.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	29.17	13.36	3.7	22.27	17.26	9.65	13.73	11.05	0.62
Merged-chr9-111074122-3	chr9	111073614	111074614	+	840.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-16596.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	4.58	4.15	0.0	4.72	3.73	6.43	0.0	4.42	1.25
Merged-chr17-35749462-2	chr17	35748958	35749958	+	840.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-22992.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	14.3	9.68	5.55	4.72	7.93	3.22	184.83	145.92	46.22
Merged-chr2-116922820-3	chr2	116922341	116923341	+	840.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22689.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	14.87	17.05	15.72	22.94	12.13	26.53	17.96	12.82	7.49
Merged-chr10-84571305-3	chr10	84570814	84571814	+	840.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5633.0	NM_146008	216198.0	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	8.01	5.07	0.0	8.77	4.2	7.23	7.39	7.96	2.5
Merged-chr16-85139483-3	chr16	85138978	85139978	+	840.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34229.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	36.61	46.54	42.55	31.71	23.33	45.82	34.85	26.97	14.36
Merged-chr4-97929182-3	chr4	97928686	97929686	+	840.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	151560.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.58	5.99	6.47	4.72	8.86	1.61	7.39	3.98	0.0
Merged-chr11-78745708-3	chr11	78745210	78746210	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6019.0	NM_197989	69109.0	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Ccnq|Fam58a	family with sequence similarity 58, member B	protein-coding	33.18	19.81	13.87	62.75	45.25	26.53	31.69	38.03	23.73
Merged-chr13-73970720-3	chr13	73970229	73971229	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	6878.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	8.01	5.53	0.0	5.4	2.33	7.23	3.17	2.65	5.0
Merged-chr6-137560807-2	chr6	137560326	137561326	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	MamTip2|DNA|hAT-Tip100	10183.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	34.32	41.47	29.6	22.94	17.73	18.49	6.34	19.46	6.25
Merged-chr13-96431901-3	chr13	96431401	96432401	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042714, intron 9 of 13)	intron (NM_001042714, intron 9 of 13)	39259.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	4.58	3.23	1.85	4.72	6.53	7.23	3.17	6.19	7.49
Merged-chr2-130731433-3	chr2	130730936	130731936	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	L2a|LINE|L2	-33917.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	95.53	68.66	60.12	119.43	73.71	97.26	53.87	59.69	74.32
Merged-chrX-140780420-2	chrX	140779919	140780919	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	33014.0	NM_031381	83555.0	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	3.43	2.76	3.7	4.05	5.13	1.61	1.06	1.33	1.25
Merged-chr19-53460553-1	chr19	53460053	53461053	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028427, intron 2 of 9)	intron (NR_028427, intron 2 of 9)	4243.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	8.58	2.76	1.85	8.1	2.33	14.47	2.11	3.54	4.37
Merged-chr5-76176617-1	chr5	76176117	76177117	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-7263.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	6.86	10.6	5.55	10.12	5.13	9.65	5.28	0.0	1.25
Merged-chr5-72161294-1	chr5	72160794	72161794	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178599, intron 3 of 4)	intron (NM_178599, intron 3 of 4)	6895.0	NM_001356611	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	9.15	9.68	0.0	20.24	8.86	19.29	6.34	8.84	9.99
Merged-chr17-79954646-1	chr17	79954146	79955146	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58523.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	6.29	17.05	9.25	4.05	7.46	6.43	11.62	11.05	16.24
Merged-chr9-10324882-2	chr9	10324380	10325380	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170787, intron 3 of 24)	intron (NM_001170787, intron 3 of 24)	430449.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	1.72	3.69	1.85	0.67	2.33	1.61	0.0	2.21	2.5
Merged-chr17-28810318-1	chr17	28809818	28810818	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081315, intron 2 of 12)	intron (NM_001081315, intron 2 of 12)	9192.0	NM_001081315	268936.0	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	12.59	14.28	14.8	12.82	17.26	20.9	16.9	19.9	23.11
Merged-chr1-195037629-1	chr1	195037129	195038129	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029745)	promoter-TSS (NR_029745)	82.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	12.01	11.98	11.1	16.87	14.0	22.51	10.56	10.17	16.86
Merged-chr12-82257133-1	chr12	82256633	82257633	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-54216.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	24.6	40.09	49.95	58.03	49.92	49.83	52.81	46.43	28.73
Merged-chrX-159607129-1	chrX	159606629	159607629	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-20143.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.72	4.15	0.0	1.35	1.87	1.61	5.28	3.1	0.0
Merged-chr6-134632406-1	chr6	134631906	134632906	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026345)	promoter-TSS (NM_026345)	82.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	8.58	11.06	12.95	11.47	5.13	7.23	2.11	2.65	5.0
Merged-chr12-35050696-1	chr12	35050196	35051196	+	840.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3507.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	69.22	99.99	84.17	60.05	51.32	45.01	88.72	114.08	45.59
Merged-chr5-8863701-4	chr5	8863154	8864154	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011075, intron 26 of 27)	intron (NM_011075, intron 26 of 27)	-30067.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	12.59	15.67	10.17	19.57	18.19	13.66	12.67	7.07	5.62
Merged-chr2-84479271-3	chr2	84478767	84479767	+	840.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR18-int|LTR|ERVK	-2492.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	21.17	14.28	11.1	14.17	11.66	17.68	19.01	12.38	5.0
Merged-chr8-71495150-3	chr8	71494642	71495642	+	840.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7039.0	NM_032544	70359.0	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	4.0	3.69	3.7	0.0	0.93	3.22	1.06	2.65	3.75
Merged-chr13-81222044-3	chr13	81221563	81222563	+	840.4722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	L1_Mur3|LINE|L1	257989.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	13.16	15.67	9.25	12.82	15.86	11.25	7.39	3.54	6.25
Merged-chr16-14291458-3	chr16	14290959	14291959	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161775)	promoter-TSS (NM_001161775)	-51.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	5.15	0.92	7.4	0.67	1.4	0.0	2.11	1.33	2.5
Merged-chr4-105253824-3	chr4	105253334	105254334	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96487.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	71.51	38.71	39.77	47.23	34.99	39.39	48.58	77.82	34.35
Merged-chr4-150473744-3	chr4	150473170	150474170	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 6 of 22)	intron (NM_001085492, intron 6 of 22)	178504.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	152.74	151.6	78.62	155.19	153.01	87.61	61.26	83.13	34.97
Merged-chr18-20741070-3	chr18	20740558	20741558	+	840.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	5346.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	101.25	101.37	69.37	189.6	161.88	167.99	106.67	135.75	54.96
Merged-chr15-99416697-3	chr15	99416188	99417188	+	840.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23469.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	12.01	4.61	2.77	6.07	4.2	12.06	16.9	9.29	5.0
Merged-chr2-72390121-3	chr2	72389628	72390628	+	840.4166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178084)	TTS (NM_178084)	-86091.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	2.86	3.69	0.92	10.12	3.27	4.82	1.06	1.33	2.5
Merged-chr1-164440391-2	chr1	164439904	164440904	+	840.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009721, intron 4 of 5)	intron (NM_009721, intron 4 of 5)	17951.0	NM_009721	11931.0	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	5.72	1.84	0.0	7.42	0.47	1.61	2.11	0.88	2.5
Merged-chr2-59402025-3	chr2	59401506	59402506	+	840.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15324.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	73.22	75.57	85.1	80.97	83.04	100.47	59.15	89.76	57.46
Merged-chr11-80176911-1	chr11	80176411	80177411	+	840.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 9 of 10)	intron (NM_172133, intron 9 of 10)	-6961.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	141.87	146.07	100.82	120.77	78.84	142.27	144.7	175.1	94.93
Merged-chr2-83673300-2	chr2	83672807	83673807	+	840.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28729.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	8.01	7.37	4.62	22.94	20.06	19.29	9.51	3.98	4.37
Merged-chr11-53735777-3	chr11	53735279	53736279	+	840.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14985.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	5.15	3.69	2.77	6.07	2.33	12.06	11.62	6.63	1.87
Merged-chr17-50880213-3	chr17	50879708	50880708	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	(CAAAAA)n|Simple_repeat|Simple_repeat	181527.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	18.31	30.87	18.5	12.82	16.79	16.08	35.91	29.63	24.36
Merged-chr4-6416194-3	chr4	6415685	6416685	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 21 of 30)	intron (NM_010945, intron 21 of 30)	38086.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	79.52	84.32	46.25	115.38	111.5	86.01	117.24	128.67	64.33
Merged-chr2-145884973-3	chr2	145884470	145885470	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-18271.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	30.89	32.72	46.25	43.18	42.45	57.07	44.36	49.52	25.61
Merged-chr1-152604404-1	chr1	152603904	152604904	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	20813.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	25.17	20.74	24.97	32.39	16.33	33.76	23.24	18.57	28.1
Merged-chr4-19879879-1	chr4	19879379	19880379	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175406, intron 7 of 7)	intron (NM_175406, intron 7 of 7)	42687.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	4.58	3.69	5.55	6.75	6.53	8.04	9.51	3.1	13.74
Merged-chr5-140331874-3	chr5	140331386	140332386	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	12.0	NM_026510	68017.0	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	37.18	29.49	37.92	27.66	22.86	35.37	25.35	34.05	35.6
Merged-chr7-83853243-1	chr7	83852743	83853743	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31098.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	9.72	3.23	10.17	17.54	4.67	7.23	9.51	4.42	9.99
Merged-chrX-153665102-3	chrX	153664602	153665602	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31178.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	17.73	9.68	12.95	8.1	9.33	8.04	6.34	4.86	13.74
Merged-chr11-35290405-1	chr11	35289905	35290905	+	840.3333130000001	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 4 of 35)	intron (NM_011412, intron 4 of 35)	168949.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	1.14	0.92	1.85	2.02	0.47	4.82	5.28	7.96	6.25
Merged-chr11-31818250-1	chr11	31817750	31818750	+	840.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102310, exon 4 of 4)	non-coding (NR_102310, exon 4 of 4)	6297.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.86	2.3	14.8	15.52	15.86	19.29	2.11	2.21	2.5
Merged-chr16-42910207-3	chr16	42909706	42910706	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	1864.0	NR_040402	100503040.0	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	24.6	41.01	24.05	24.29	25.66	24.11	31.69	30.07	14.36
Merged-chr2-103672772-3	chr2	103672252	103673252	+	840.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88518.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	33.75	11.98	19.42	11.47	6.06	9.65	17.96	17.24	9.99
Merged-chr8-107403189-3	chr8	107402685	107403685	+	840.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008706)	promoter-TSS (NM_008706)	20.0	NM_008706	18104.0	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	6.86	5.07	0.0	7.42	2.8	1.61	5.28	5.31	7.49
Merged-chr5-92106473-3	chr5	92105960	92106960	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-22716.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	25.17	26.26	34.22	31.71	29.86	44.21	40.14	36.26	31.85
Merged-chr1-131511283-3	chr1	131510759	131511759	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	16102.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	9.15	6.45	14.8	18.89	4.67	8.04	7.39	5.75	8.12
Merged-chr3-84229105-3	chr3	84228601	84229601	+	840.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	-8224.0	NM_030706	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	21.74	40.55	7.4	28.34	22.86	15.27	19.01	11.05	9.37
Merged-chr2-91280142-2	chr2	91279635	91280635	+	840.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 7 of 8)	intron (NM_175123, intron 7 of 8)	15020.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	7.44	3.69	0.0	10.8	3.27	10.45	16.9	7.52	0.0
Merged-chr13-117224533-1	chr13	117224033	117225033	+	840.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	3960.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.86	5.07	3.7	2.02	1.4	0.8	3.17	1.33	3.75
Merged-chr9-72469036-2	chr9	72468548	72469548	+	840.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	22911.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	19.45	19.81	3.7	12.82	4.2	8.04	9.51	11.05	8.74
Merged-chr16-92412557-3	chr16	92412047	92413047	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	RLTR28|LTR|ERVL	-12469.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	121.85	120.73	102.67	141.02	127.82	145.49	111.96	97.28	82.44
Merged-chr10-127520614-3	chr10	127520093	127521093	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028230, intron 2 of 11)	intron (NM_028230, intron 2 of 11)	1851.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	5.15	2.3	7.4	5.4	1.87	0.0	6.34	2.21	1.25
Merged-chr10-80960985-3	chr10	80960471	80961471	+	840.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	30880.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	8.58	1.84	1.85	0.0	3.73	0.0	7.39	3.1	0.0
Merged-chr5-88543087-2	chr5	88542570	88543570	+	840.216675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-11392.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	8.58	8.75	5.55	6.07	4.2	8.04	2.11	2.65	0.0
Merged-chr12-71309824-2	chr12	71309332	71310332	+	840.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021532)	promoter-TSS (NM_021532)	-52.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	6.86	1.84	5.55	2.7	2.33	4.82	3.17	1.77	2.5
Merged-chr2-79611309-3	chr2	79610794	79611794	+	840.1904910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24131.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	4.58	3.23	0.0	8.77	13.53	0.0	5.28	1.33	3.75
Merged-chr2-110018450-3	chr2	110017949	110018949	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149736, intron 1 of 6)	intron (NR_149736, intron 1 of 6)	632.0	NR_149736	68201.0	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	45.19	62.21	13.87	41.83	40.12	25.72	17.96	23.88	10.62
Merged-chr18-9865865-3	chr18	9865368	9866368	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 7 of 9)	intron (NM_130449, intron 7 of 9)	-92312.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	2.29	2.76	0.92	8.1	7.0	3.22	4.22	1.77	2.5
Merged-chr3-87356811-3	chr3	87356292	87357292	+	840.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1089.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	33.18	57.6	44.4	52.63	37.79	72.34	146.81	193.23	84.31
Merged-chr2-181238968-2	chr2	181238435	181239435	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 4 of 18)	L1_Mus3|LINE|L1	3092.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	2.29	0.46	1.85	11.47	2.33	8.84	25.35	14.15	23.11
Merged-chr15-35326698-2	chr15	35326144	35327144	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045280, intron 1 of 2)	CpG	1891.0	NR_045280	100126269.0	Mm.247402	NR_045280	ENSMUSG00000115453	BC048602	-	cDNA sequence BC048602	ncRNA	2.29	5.99	2.77	6.75	4.2	3.22	2.11	3.98	8.74
Merged-chr2-181282369-2	chr2	181281878	181282878	+	840.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 1 of 9)	intron (NM_198169, intron 1 of 9)	5588.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	4.0	6.45	9.25	14.17	7.46	15.27	11.62	12.38	14.99
Merged-chr11-46128023-3	chr11	46127522	46128522	+	840.1555789999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001311209, exon 1 of 12)	5' UTR (NM_001311209, exon 1 of 12)	118.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	3.43	5.99	11.1	8.77	7.93	1.61	10.56	7.52	7.49
Merged-chr19-9898790-4	chr19	9898241	9899241	+	840.1142580000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016692, intron 1 of 17)	intron (NM_016692, intron 1 of 17)	792.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	134.43	156.67	115.62	145.74	141.82	131.02	109.84	121.15	98.05
Merged-chr2-32350639-3	chr2	32350144	32351144	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010065, intron 1 of 20)	intron (NM_010065, intron 1 of 20)	2685.0	NM_001301737	13429.0	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	3.43	1.38	1.85	3.37	0.0	0.8	3.17	1.77	2.5
Merged-chr9-96713332-3	chr9	96712838	96713838	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	intron (NM_001359959, intron 2 of 2)	6107.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	34.9	64.97	19.42	51.28	70.44	52.25	33.8	58.81	26.23
Merged-chr11-75171738-3	chr11	75171242	75172242	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1487.0	NM_010430	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	22.88	18.89	4.62	31.71	10.73	25.72	38.02	23.43	27.48
Merged-chr9-116063256-3	chr9	116062772	116063772	+	840.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	ORR1E|LTR|ERVL-MaLR	112091.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	10.3	8.29	5.55	13.49	5.6	14.47	5.28	2.21	1.25
Merged-chr15-86205505-2	chr15	86204991	86205991	+	840.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8968.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	41.19	27.65	30.52	31.71	24.26	32.15	44.36	28.3	35.6
Merged-chr9-122337595-2	chr9	122337098	122338098	+	840.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14018.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	8.01	1.84	12.02	7.42	7.0	3.22	7.39	2.65	5.0
Merged-chr11-103030427-2	chr11	103029933	103030933	+	840.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	1890.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	62.93	64.51	50.87	66.8	57.85	78.77	86.61	78.26	48.09
Merged-chr13-111686886-3	chr13	111686393	111687393	+	840.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172593, intron 1 of 12)	CpG	715.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	13.73	9.22	15.72	18.22	3.73	9.65	14.79	4.42	19.36
Merged-chr1-9968118-2	chr1	9967604	9968604	+	840.0750119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285425)	promoter-TSS (NM_001285425)	-619.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	5.15	3.69	9.25	4.05	2.33	1.61	4.22	2.65	5.0
Merged-chr17-24212447-3	chr17	24211955	24212955	+	840.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3068.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	5.72	1.38	9.25	13.49	8.4	5.63	3.17	3.54	2.5
Merged-chr1-171682089-3	chr1	171681645	171682645	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360767, exon 1 of 3)	exon (NM_001360767, exon 1 of 3)	153.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	72.65	98.15	86.95	74.89	90.97	109.32	147.87	152.11	73.69
Merged-chr11-116493979-3	chr11	116493479	116494479	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3633.0	NM_026364	67763.0	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	4.0	1.84	0.0	4.05	2.8	3.22	5.28	2.65	3.12
Merged-chr4-6209741-3	chr4	6209225	6210225	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026534, intron 6 of 7)	L3|LINE|CR1	18620.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	5.72	1.38	1.85	4.72	7.46	8.04	21.12	14.15	8.74
Merged-chr19-17218353-3	chr19	17217847	17218847	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	121158.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	37.18	39.63	38.85	41.16	17.73	11.25	39.08	45.1	32.48
Merged-chr11-87662562-3	chr11	87662056	87663056	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172448)	promoter-TSS (NM_172448)	-531.0	NM_172448	207742.0	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	5.15	4.15	1.85	6.75	2.33	1.61	4.22	3.98	4.37
Merged-chr3-57749051-3	chr3	57748508	57749508	+	840.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357080, intron 2 of 10)	intron (NM_001357080, intron 2 of 10)	12951.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	9.15	10.6	5.55	7.42	4.67	15.27	9.51	4.86	11.87
Merged-chr6-135417599-1	chr6	135417099	135418099	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50106.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.43	0.92	0.0	0.0	0.47	0.0	4.22	0.44	2.5
Merged-chr13-116985095-2	chr13	116984589	116985589	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	RMER16|LTR|ERVK	40427.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	25.17	26.73	17.57	3.37	8.86	9.65	7.39	10.61	8.74
Merged-chr6-72375355-2	chr6	72374833	72375833	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	MIR|SINE|MIR	5135.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	45.19	27.65	8.32	47.9	34.52	28.13	40.14	29.63	16.24
Merged-chr6-43297471-1	chr6	43296971	43297971	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12083.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	2.29	2.3	0.92	2.7	1.87	1.61	1.06	1.33	3.75
Merged-chr14-54742573-2	chr14	54742066	54743066	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-30392.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	36.61	28.11	40.7	40.48	44.32	35.37	17.96	12.82	19.98
Merged-chr17-26572076-1	chr17	26571576	26572576	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	10564.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	73.22	33.64	25.9	105.93	84.9	48.23	55.98	59.25	19.98
Merged-chr10-53439085-2	chr10	53438583	53439583	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	29201.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	1.72	1.38	1.85	7.42	8.4	7.23	6.34	4.42	6.87
Merged-chr17-12315490-1	chr17	12314990	12315990	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	3170.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	2.86	1.38	5.55	4.72	5.13	11.25	12.67	17.69	9.99
Merged-chr10-52423300-1	chr10	52422800	52423800	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	B3A|SINE|B2	5753.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	12.01	15.67	16.65	6.75	13.53	13.66	8.45	18.13	7.49
Merged-chr1-125433186-1	chr1	125432686	125433686	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	2541.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	78.94	103.22	71.22	99.86	64.84	82.79	188.0	215.78	86.18
Merged-chr11-49855418-1	chr11	49854918	49855918	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 2 of 11)	intron (NM_016961, intron 2 of 11)	8667.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	16.59	20.27	24.05	6.75	10.26	18.49	48.58	34.05	22.48
Merged-chr19-53855567-1	chr19	53855067	53856067	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170847, intron 12 of 13)	intron (NM_001170847, intron 12 of 13)	-36664.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	17.73	26.26	20.35	30.36	31.26	47.42	42.25	44.22	16.24
Merged-chr13-93901014-1	chr13	93900514	93901514	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110237.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	12.01	7.83	5.55	25.64	10.73	13.66	7.39	8.84	3.75
Merged-chr17-31519578-1	chr17	31519078	31520078	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_030087)	promoter-TSS (NM_030087)	-537.0	NM_030087	78330.0	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	69.79	84.32	56.42	62.07	47.12	64.3	67.6	71.63	54.33
Merged-chr8-120536086-3	chr8	120535601	120536601	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151732)	TTS (NR_151732)	244.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	25.17	18.43	21.27	29.69	23.33	32.96	39.08	27.41	23.11
Merged-chr6-135977113-2	chr6	135976612	135977612	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008171, intron 4 of 14)	intron (NM_008171, intron 4 of 14)	196399.0	NM_008171	14812.0	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	1.72	2.76	3.7	5.4	2.33	6.43	25.35	11.5	5.0
Merged-chr1-88268935-1	chr1	88268435	88269435	+	840.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 3 of 4)	intron (NM_172505, intron 3 of 4)	473.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	4.0	9.22	25.9	12.14	14.93	23.31	9.51	17.69	22.48
Merged-chr14-27338184-1	chr14	27337684	27338684	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	2147.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	20.59	41.47	37.92	22.94	35.92	32.15	63.37	73.4	17.49
Merged-chr1-151511034-1	chr1	151510534	151511534	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-10043.0	NM_001360847	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	10.87	25.8	16.65	31.71	27.06	34.56	30.63	38.91	31.23
Merged-chr13-89892333-1	chr13	89891833	89892833	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	L1_Mur2|LINE|L1	-149821.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	10.3	3.69	11.1	4.72	4.2	6.43	4.22	1.33	3.12
Merged-chr8-106004873-1	chr8	106004373	106005373	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-6605.0	NM_025518	66369.0	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	4.58	5.99	4.62	27.66	26.12	27.33	6.34	10.61	2.5
Merged-chr9-89674403-1	chr9	89673903	89674903	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30640.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	5.72	3.23	0.0	6.07	0.93	1.61	1.06	4.86	6.25
Merged-chr1-174117153-1	chr1	174116653	174117653	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001005520)	TTS (NM_001005520)	861.0	NM_001005520	404222.0	Mm.457873	NM_001005520	ENSMUSG00000046486	Olfr231	MOR105-4|Olfr231-ps1|Olfr244|Olfr244-ps1|Olfr425|Olfr425-ps1	olfactory receptor 231	protein-coding	6.86	15.21	9.25	4.05	0.93	0.0	3.17	7.96	7.49
Merged-chr5-120513530-1	chr5	120513030	120514030	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177595, intron 2 of 13)	L2a|LINE|L2	2338.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	154.45	189.84	148.92	172.05	221.13	265.25	234.47	278.12	174.87
Merged-chr14-13917846-1	chr14	13917346	13918346	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43467.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	2.29	2.76	12.95	9.45	1.87	9.65	2.11	0.44	4.37
Merged-chr17-26298463-1	chr17	26297963	26298963	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR10D|LTR|ERVK	45553.0	NR_037905	66978.0	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	13.73	8.75	13.87	1.35	5.6	2.41	4.22	4.86	2.5
Merged-chr15-27467028-1	chr15	27466528	27467528	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020332, exon 1 of 12)	exon (NM_020332, exon 1 of 12)	351.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	5.72	0.0	3.7	10.12	6.06	4.82	5.28	0.0	1.25
Merged-chr13-119805851-3	chr13	119805374	119806374	+	840.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-14752.0	NM_001302550	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	10.87	4.15	13.87	10.12	6.53	12.86	2.11	2.65	3.12
Merged-chr15-72929334-1	chr15	72928834	72929834	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 14 of 21)	intron (NM_029640, intron 14 of 21)	-119010.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	1.72	0.92	3.7	5.4	3.73	7.23	2.11	1.33	0.0
Merged-chr9-47581705-1	chr9	47581205	47582205	+	840.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	51353.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	24.6	20.74	22.2	43.18	27.52	30.54	14.79	6.63	10.62
Merged-chr4-155094220-4	chr4	155093677	155094677	+	839.9583130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	7573.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	24.03	25.34	36.07	21.59	14.0	35.37	33.8	27.86	26.23
Merged-chrX-159647743-3	chrX	159647211	159648211	+	839.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	20439.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	18.31	16.59	19.42	14.84	19.13	24.11	12.67	11.05	16.86
Merged-chr15-97212745-3	chr15	97212245	97213245	+	839.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34362.0	NM_172293	239647.0	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	52.06	82.48	47.17	63.42	73.71	59.48	64.43	77.38	43.72
Merged-chr15-78303816-3	chr15	78303313	78304313	+	839.9166869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	URR1A|DNA|hAT-Charlie	1908.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	46.34	47.92	49.95	66.12	42.45	43.4	42.25	32.28	11.24
Merged-chr12-73537893-2	chr12	73537405	73538405	+	839.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8490.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	6.29	5.99	5.55	13.49	4.67	8.84	14.79	20.34	12.49
Merged-chr7-122258680-3	chr7	122258179	122259179	+	839.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30446.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	68.65	83.4	35.15	103.23	69.04	71.54	97.17	93.3	51.84
Merged-chr3-105850272-2	chr3	105849757	105850757	+	839.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-20601.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	14.3	11.06	8.32	2.7	3.73	13.66	9.51	11.94	8.74
Merged-chr2-102999011-2	chr2	102998510	102999510	+	839.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74503.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	26.31	17.51	1.85	61.4	34.06	11.25	54.92	30.51	9.99
Merged-chr1-186182792-2	chr1	186182284	186183284	+	839.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65474.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	25.74	24.88	14.8	10.8	13.53	13.66	2.11	0.44	1.25
Merged-chr15-9572060-3	chr15	9571574	9572574	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42198.0	NM_008372	16197.0	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	6.86	11.06	11.1	8.77	7.46	17.68	12.67	7.07	15.61
Merged-chr14-61498392-3	chr14	61497910	61498910	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045714, intron 2 of 2)	intron (NR_045714, intron 2 of 2)	5722.0	NR_045714	75349.0	Mm.233613	NR_045714	ENSMUSG00000115656	4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	12.59	4.61	10.17	12.14	3.73	8.04	12.67	10.61	11.87
Merged-chr9-90062106-3	chr9	90061574	90062574	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007801, intron 3 of 11)	intron (NM_007801, intron 3 of 11)	7807.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	70.36	61.75	45.32	53.3	31.72	35.37	39.08	26.53	30.6
Merged-chr17-63873664-3	chr17	63873172	63874172	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	intron (NM_001037997, intron 1 of 18)	-4394.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	20.59	22.58	33.3	24.96	18.19	36.97	20.07	34.05	26.23
Merged-chrX-7878162-3	chrX	7877676	7878676	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138606)	promoter-TSS (NM_138606)	-130.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	7.44	12.44	7.4	14.84	9.33	6.43	11.62	10.17	9.99
Merged-chr14-16248719-3	chr14	16248210	16249210	+	839.8333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362433)	promoter-TSS (NM_001362433)	466.0	NM_001359882	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	96.11	62.67	46.25	87.71	46.18	56.27	74.99	61.46	56.83
Merged-chr5-145117085-3	chr5	145116615	145117615	+	839.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	2859.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	100.11	79.25	65.67	81.64	61.11	66.71	84.49	68.54	77.44
Merged-chr8-111233972-3	chr8	111233466	111234466	+	839.8110960000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	25236.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	45.19	33.64	25.9	75.57	59.25	62.7	99.28	93.74	36.85
Merged-chr10-8837857-3	chr10	8837350	8838350	+	839.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	48220.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	46.91	61.28	42.55	53.3	46.65	58.68	42.25	43.77	22.48
Merged-chr5-21113755-3	chr5	21113246	21114246	+	839.7777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-57835.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	22.88	17.51	16.65	19.57	7.93	9.65	30.63	12.82	14.36
Merged-chr9-114648672-2	chr9	114648166	114649166	+	839.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8466.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.57	8.29	5.55	5.4	4.2	1.61	11.62	8.84	6.25
Merged-chr9-21602151-3	chr9	21601669	21602669	+	839.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6160.0	NR_003372	666043.0	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	2.86	9.22	9.25	11.47	5.6	8.04	10.56	12.82	6.25
Merged-chr8-10911201-3	chr8	10910679	10911679	+	839.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11257.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	33.75	23.5	33.3	36.43	19.13	20.9	14.79	8.84	16.24
Merged-chrX-9128395-3	chrX	9127972	9128972	+	839.746033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23910.0	NM_001270700	75775.0	Mm.50374	NM_001270700	ENSMUSG00000045797	4930402K13Rik	-	RIKEN cDNA 4930402K13 gene	protein-coding	10.3	24.88	12.95	18.22	26.12	11.25	34.85	22.55	10.62
Merged-chr12-44933182-3	chr12	44932682	44933682	+	839.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	141301.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	3.43	3.23	1.85	2.02	2.8	6.43	11.62	4.86	3.75
Merged-chrX-166945584-3	chrX	166945097	166946097	+	839.7222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124773.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	28.6	17.97	22.2	24.29	20.06	4.02	31.69	29.18	22.48
Merged-chr12-11214905-2	chr12	11214397	11215397	+	839.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5949.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	17.16	18.89	12.95	22.27	13.06	27.33	6.34	1.77	3.75
Merged-chr17-5941022-3	chr17	5940501	5941501	+	839.7000119999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113353)	promoter-TSS (NM_001113353)	-279.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	18.31	3.69	15.72	8.77	7.46	4.02	19.01	7.07	3.75
Merged-chr16-75886486-3	chr16	75885995	75886995	+	839.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023380, intron 2 of 7)	intron (NM_023380, intron 2 of 7)	22771.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	69.79	70.5	53.65	50.6	57.85	57.07	62.31	90.2	49.34
Merged-chr19-9987530-5	chr19	9987019	9988019	+	839.679993	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	4873.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	18.31	19.81	22.2	15.52	12.13	15.27	15.84	7.07	22.48
Merged-chr15-67087580-1	chr15	67087080	67088080	+	839.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	89302.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	14.3	2.76	12.95	8.77	7.46	11.25	7.39	6.19	3.12
Merged-chr9-47589994-3	chr9	47589457	47590457	+	839.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	MIRb|SINE|MIR	59605.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	45.19	32.25	1.85	58.03	46.65	32.15	12.67	2.65	6.25
Merged-chr13-54295905-3	chr13	54295467	54296467	+	839.6666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75382.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	6.29	13.36	5.55	9.45	5.13	8.04	36.97	19.01	18.74
Merged-chr12-3658054-1	chr12	3657554	3658554	+	839.6666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	85070.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	10.3	9.68	22.2	15.52	9.8	6.43	9.51	4.86	6.25
Merged-chr19-25002366-2	chr19	25001863	25002863	+	839.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	MTE2a|LTR|ERVL-MaLR	2834.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	40.62	46.54	46.25	45.21	41.99	28.94	63.37	66.33	44.34
Merged-chr3-84348269-2	chr3	84347751	84348751	+	839.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31670.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.0	1.38	5.55	12.82	12.13	14.47	8.45	10.17	5.0
Merged-chr3-58417105-2	chr3	58416640	58417640	+	839.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081229, exon 1 of 4)	exon (NM_001081229, exon 1 of 4)	2420.0	NM_001347233	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	42.9	32.25	36.07	53.98	24.26	35.37	44.36	23.43	18.74
Merged-chr13-107114087-2	chr13	107113581	107114581	+	839.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	91511.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	6.29	4.61	3.7	2.7	1.87	0.0	1.06	0.0	0.0
Merged-chr7-56019661-3	chr7	56019142	56020142	+	839.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153578)	promoter-TSS (NM_153578)	-69.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	11.44	8.75	13.87	10.8	6.06	11.25	8.45	5.75	3.75
Merged-chr4-120826940-3	chr4	120826428	120827428	+	839.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048168, intron 1 of 9)	intron (NM_001048168, intron 1 of 9)	-1187.0	NM_008692	18046.0	Mm.318389	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	37.76	31.79	36.07	39.81	24.26	53.85	71.82	61.9	59.33
Merged-chr16-8686328-3	chr16	8685845	8686845	+	839.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5575.0	NM_001324517	436336.0	Mm.357666	NM_001324517		Gm5767	EG436336|Gm43786	predicted gene 5767	protein-coding	2.29	3.69	7.4	2.02	4.2	1.61	2.11	1.33	5.62
Merged-chr3-152265946-2	chr3	152265434	152266434	+	839.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357206)	promoter-TSS (NM_001357206)	-139.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	7.44	2.76	2.77	8.77	7.0	6.43	2.11	2.21	3.12
Merged-chr12-102690402-3	chr12	102689905	102690905	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5385.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	56.06	60.82	83.25	41.83	37.32	47.42	71.82	57.48	45.59
Merged-chr9-21593576-3	chr9	21593098	21594098	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138303)	promoter-TSS (NM_138303)	-767.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	105.26	67.27	61.97	126.17	105.43	101.28	113.01	91.09	60.58
Merged-chr11-80156922-3	chr11	80156430	80157430	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	2768.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	86.38	104.6	105.44	84.34	88.17	115.75	119.35	139.28	73.07
Merged-chr1-39851335-3	chr1	39850841	39851841	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4011.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	3.43	8.29	1.85	2.02	4.67	3.22	6.34	3.1	1.25
Merged-chr1-20939259-3	chr1	20938750	20939750	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028829, exon 3 of 3)	3' UTR (NM_028829, exon 3 of 3)	-12376.0	NM_027974	71877.0	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	7.44	9.68	3.7	10.8	8.86	5.63	1.06	1.33	3.75
Merged-chr5-107868500-3	chr5	107867997	107868997	+	839.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007964, intron 1 of 17)	CpG	6610.0	NM_007964	14020.0	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	56.63	62.67	77.7	70.17	54.11	71.54	76.05	53.06	39.97
Merged-chr9-105122980-3	chr9	105122474	105123474	+	839.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8831.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	50.91	49.76	35.15	68.15	49.92	59.48	35.91	53.06	30.6
Merged-chr11-17000569-3	chr11	17000058	17001058	+	839.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	8160.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	104.69	146.07	98.97	97.16	132.95	103.69	109.84	119.83	109.92
Merged-chr4-133202369-2	chr4	133201887	133202887	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6732.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	8.58	7.37	13.87	9.45	3.73	9.65	3.17	1.33	5.0
Merged-chr1-162587734-1	chr1	162587234	162588234	+	839.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 4 of 7)	intron (NM_001356527, intron 4 of 7)	16906.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	10.3	11.98	11.1	29.69	29.39	20.09	64.43	45.99	24.36
Merged-chr4-59033576-1	chr4	59033076	59034076	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1580.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	12.59	8.29	3.7	8.77	11.66	10.45	4.22	2.21	8.12
Merged-chr9-45241595-1	chr9	45241095	45242095	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198971, intron 2 of 4)	intron (NM_001198971, intron 2 of 4)	25112.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	25.17	22.58	30.52	26.99	21.93	24.11	33.8	19.01	28.1
Merged-chr12-85427950-1	chr12	85427450	85428450	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-45940.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.01	2.76	3.7	8.1	2.33	0.0	2.11	2.21	4.37
Merged-chr16-24930936-2	chr16	24930417	24931417	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-128722.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	39.47	51.15	33.3	49.93	47.12	63.5	33.8	46.43	34.35
Merged-chr5-135614812-2	chr5	135614296	135615296	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17858.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	17.16	7.83	1.85	42.51	28.46	40.99	25.35	11.5	6.87
Merged-chr9-104710504-1	chr9	104710004	104711004	+	839.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	intron (NM_028719, intron 2 of 15)	141021.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	2.29	2.76	0.0	6.75	6.06	0.0	2.11	5.31	1.87
Merged-chr5-125381540-1	chr5	125381040	125382040	+	839.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	8477.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	16.02	9.22	25.9	12.14	6.06	10.45	15.84	12.82	10.62
Merged-chr15-51449870-3	chr15	51449357	51450357	+	839.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-54247.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	22.88	26.26	12.02	26.99	14.46	6.43	22.18	18.57	13.74
Merged-chr5-134234386-3	chr5	134233894	134234894	+	839.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4769.0	NR_104383	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	29.75	21.66	29.6	41.16	30.32	57.07	46.47	17.24	13.12
Merged-chr8-120796404-3	chr8	120795918	120796918	+	839.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57779.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	8.01	3.23	1.85	4.05	0.93	1.61	7.39	3.54	5.0
Merged-chr3-20033836-2	chr3	20033351	20034351	+	839.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 1 of 16)	intron (NM_080634, intron 1 of 16)	1459.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	20.02	31.79	33.3	29.01	35.92	20.09	38.02	30.51	30.6
Merged-chr2-60822340-2	chr2	60821829	60822829	+	839.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	59109.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	189.35	187.08	96.2	197.02	191.27	127.0	177.44	152.55	59.33
Merged-chr1-53856883-1	chr1	53856383	53857383	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 19 of 28)	intron (NM_001001883, intron 19 of 28)	7459.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	75.51	82.02	64.75	103.23	91.9	73.14	34.85	38.03	29.35
Merged-chr7-91598720-1	chr7	91598220	91599220	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	RMER6A|LTR|ERVK	-463674.0	NM_001243046	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	5.72	2.76	3.7	4.05	4.67	4.82	5.28	5.75	1.25
Merged-chr19-16047161-3	chr19	16046645	16047645	+	839.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62070.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	22.88	48.38	40.7	24.29	25.19	40.99	61.26	42.01	43.09
Merged-chr13-31225619-1	chr13	31225119	31226119	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	L1MA5A|LINE|L1	15467.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	39.47	48.38	23.12	47.9	67.18	51.44	42.25	43.33	14.99
Merged-chr8-86891723-1	chr8	86891223	86892223	+	839.3333130000001	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-6465.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	4.58	6.45	4.62	7.42	4.2	4.82	1.06	1.33	3.75
Merged-chr19-21377062-3	chr19	21376558	21377558	+	839.3333130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95603.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	10.3	2.76	3.7	10.8	9.8	34.56	7.39	2.21	6.25
Merged-chr2-35232862-3	chr2	35232391	35233391	+	839.2777710000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23468.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	29.17	47.0	49.02	73.54	46.18	51.44	65.48	86.66	42.47
Merged-chr10-8358400-3	chr10	8357892	8358892	+	839.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	160433.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	8.58	8.75	18.5	14.17	15.39	14.47	14.79	11.5	8.12
Merged-chr9-20979987-3	chr9	20979499	20980499	+	839.2666630000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3206.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	22.88	25.34	5.55	39.81	24.72	30.54	25.35	30.95	25.61
Merged-chr5-88961567-1	chr5	88961067	88962067	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359211, intron 3 of 26)	intron (NM_001359211, intron 3 of 26)	-66399.0	NM_001359212	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	5.72	8.29	1.85	12.14	2.8	5.63	10.56	3.54	3.12
Merged-chr1-144295122-2	chr1	144294609	144295609	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46005.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	4.58	8.29	14.8	9.45	9.8	18.49	10.56	10.61	11.24
Merged-chr6-26404073-1	chr6	26403573	26404573	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	472647.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	7.44	4.61	10.17	6.75	9.8	12.86	5.28	3.1	8.74
Merged-chr16-33747633-2	chr16	33747133	33748133	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175256, intron 10 of 14)	L1MA6|LINE|L1	-46404.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	16.02	14.75	13.87	27.66	32.66	41.8	32.74	25.65	19.36
Merged-chr2-171633392-1	chr2	171632892	171633892	+	839.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	329407.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	5.72	5.99	1.85	16.19	10.26	14.47	3.17	1.33	1.87
Merged-chr4-89282220-3	chr4	89281712	89282712	+	839.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040654)	promoter-TSS (NM_001040654)	-20.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	4.58	1.38	1.85	1.35	1.87	1.61	1.06	1.33	2.5
Merged-chr16-87654375-3	chr16	87653855	87654855	+	839.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44599.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	65.21	50.69	43.47	108.63	69.51	68.32	55.98	49.96	23.11
Merged-chr4-125146374-3	chr4	125145860	125146860	+	839.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18479.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	62.35	27.19	44.4	40.48	25.19	30.54	21.12	16.8	16.24
Merged-chr4-105561017-3	chr4	105560500	105561500	+	839.2222289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	403653.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	23.45	23.04	14.8	30.36	21.46	21.7	34.85	32.28	16.24
Merged-chr16-20424936-2	chr16	20424432	20425432	+	839.2000119999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 1 of 6)	intron (NM_176839, intron 1 of 6)	1462.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	166.47	171.41	117.47	132.92	155.35	117.35	174.27	243.63	96.18
Merged-chr7-24890656-3	chr7	24890183	24891183	+	839.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360119)	TTS (NM_001360119)	5770.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	3.43	4.15	3.7	2.7	5.13	8.84	7.39	1.77	14.99
Merged-chr19-45659757-3	chr19	45659335	45660335	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013907, exon 1 of 9)	exon (NM_013907, exon 1 of 9)	358.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	280.31	223.94	253.44	267.19	238.85	236.31	316.86	214.89	219.83
Merged-chr5-140502523-3	chr5	140502062	140503062	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3047.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	8.58	4.61	9.25	6.07	4.2	10.45	14.79	7.96	4.37
Merged-chr13-95503584-1	chr13	95503084	95504084	+	839.1666869999999	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	21656.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	2.86	2.3	3.7	0.0	1.87	1.61	13.73	9.29	13.12
Merged-chr4-119980059-3	chr4	119979499	119980499	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	(TG)n|Simple_repeat|Simple_repeat	165321.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	38.33	24.42	31.45	29.01	11.66	48.23	15.84	25.2	36.22
Merged-chr6-29268646-1	chr6	29268146	29269146	+	839.1666869999999	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	20.02	20.74	19.42	29.01	20.99	28.13	26.4	16.8	8.74
Merged-chr19-21599178-2	chr19	21598676	21599676	+	839.1666869999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025423, intron 2 of 3)	intron (NM_025423, intron 2 of 3)	53615.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	10.3	9.22	9.25	12.82	7.93	8.84	8.45	6.63	2.5
Merged-chr4-8691881-3	chr4	8691321	8692321	+	839.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	CpG	1415.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	77.8	48.38	83.25	68.15	39.19	92.44	98.23	36.7	45.59
Merged-chr7-27507072-3	chr7	27506577	27507577	+	839.1333619999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019412, intron 4 of 5)	intron (NM_019412, intron 4 of 5)	7753.0	NM_019412	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	11.44	10.6	5.55	12.14	7.46	11.25	13.73	5.31	9.99
Merged-chr7-122383475-2	chr7	122382975	122383975	+	839.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MTEa|LTR|ERVL-MaLR	94350.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	2.86	4.61	11.1	13.49	8.4	16.08	7.39	6.19	7.49
Merged-chr3-16025195-3	chr3	16024706	16025706	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-18874.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	12.01	16.59	9.25	18.22	20.53	4.82	8.45	10.61	6.25
Merged-chr3-65351767-3	chr3	65351263	65352263	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 8 of 13)	intron (NM_001357358, intron 8 of 13)	-2334.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	4.58	4.61	3.7	4.72	2.33	1.61	3.17	7.07	8.74
Merged-chr3-36467817-3	chr3	36467298	36468298	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	7726.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	12.01	13.36	3.7	18.89	16.79	8.04	9.51	10.61	11.24
Merged-chrX-96126916-3	chrX	96126363	96127363	+	839.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	30818.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	38.9	52.53	42.55	62.07	52.72	28.13	48.58	72.07	26.85
Merged-chr16-91640396-2	chr16	91639899	91640899	+	839.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357351, intron 4 of 21)	intron (NM_001357351, intron 4 of 21)	6573.0	NM_010256	14450.0	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	13.16	5.99	11.1	4.72	8.4	16.08	26.4	15.48	24.36
Merged-chr15-77837902-3	chr15	77837396	77838396	+	839.0833130000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	4279.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	23.45	14.75	13.87	16.19	11.2	3.22	17.96	17.24	25.61
Merged-chr15-75886947-2	chr15	75886452	75887452	+	839.0499880000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 4 of 13)	intron (NM_001282443, intron 4 of 13)	1771.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	21.74	20.27	11.1	31.71	20.99	18.49	23.24	19.46	11.24
Merged-chr7-123312095-2	chr7	123311593	123312593	+	839.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 8 of 19)	intron (NM_001316713, intron 8 of 19)	57822.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	16.59	9.68	19.42	12.14	4.2	12.86	4.22	9.29	6.25
Merged-chrX-166952941-3	chrX	166952438	166953438	+	839.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117432.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	36.61	29.49	15.72	37.78	41.99	36.97	41.19	43.77	38.72
Merged-chr7-30717424-4	chr7	30716914	30717914	+	839.008301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018731, intron 10 of 21)	intron (NM_018731, intron 10 of 21)	5205.0	NM_001290627	11944.0	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	5.15	2.3	10.17	6.07	2.33	1.61	6.34	3.54	2.5
Merged-chr10-34034108-1	chr10	34033608	34034608	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	2.29	0.92	3.7	5.4	3.27	8.04	4.22	0.88	1.25
Merged-chr12-34432009-3	chr12	34431516	34432516	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 6 of 27)	intron (NM_001271386, intron 6 of 27)	96873.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	27.46	22.12	26.82	31.71	13.06	24.11	10.56	11.5	9.37
Merged-chr18-12925945-1	chr18	12925445	12926445	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	15896.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	16.59	14.75	24.05	14.84	11.66	8.04	14.79	14.15	7.49
Merged-chr10-19065426-3	chr10	19064922	19065922	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50012.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	16.59	28.11	3.7	22.94	13.53	11.25	27.46	16.36	11.24
Merged-chr17-24584683-1	chr17	24584183	24585183	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013630, intron 26 of 45)	Tigger6a|DNA|TcMar-Tigger	34733.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	20.02	28.11	19.42	18.22	14.93	20.9	24.29	20.78	23.73
Merged-chr17-29171276-3	chr17	29170744	29171744	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360239, intron 13 of 21)	intron (NM_001360239, intron 13 of 21)	36188.0	NM_001002786	442827.0	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	2.29	3.23	3.7	8.1	3.73	4.02	0.0	3.54	0.0
Merged-chr8-106210118-1	chr8	106209618	106210618	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145404)	promoter-TSS (NM_145404)	815.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	49.77	41.93	48.1	42.51	48.05	63.5	45.42	46.87	38.72
Merged-chr9-32501597-2	chr9	32501087	32502087	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	39865.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	90.96	114.27	91.57	114.7	125.02	73.14	115.12	76.94	62.45
Merged-chr11-101758699-1	chr11	101758199	101759199	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25743.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	5.15	7.37	9.25	21.59	8.86	19.29	15.84	4.86	11.24
Merged-chr1-121427128-1	chr1	121426628	121427628	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3939.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	17.73	6.45	22.2	15.52	9.8	10.45	8.45	10.61	9.99
Merged-chr1-53852192-1	chr1	53851692	53852692	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 20 of 28)	intron (NM_001001883, intron 20 of 28)	2768.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	180.77	134.55	118.39	186.22	105.9	124.59	125.69	70.75	89.93
Merged-chr1-157433604-1	chr1	157433104	157434104	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21009.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	5.15	5.53	3.7	4.05	2.8	3.22	4.22	2.21	8.74
Merged-chr15-58754771-1	chr15	58754271	58755271	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68656.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	56.63	35.48	20.35	77.59	41.99	34.56	62.31	30.95	25.61
Merged-chr8-88290577-2	chr8	88290071	88291071	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037723, intron 1 of 27)	intron (NM_001037723, intron 1 of 27)	1505.0	NM_001037723	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	30.89	29.95	19.42	17.54	14.46	15.27	14.79	10.61	18.74
Merged-chrUn_JH584304-90546-1	chrUn_JH584304	90046	91046	+	839.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-30857.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	5.28	6.63	0.0
Merged-chr2-29632413-3	chr2	29631915	29632915	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	L1MB3|LINE|L1	12695.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	20.59	16.59	16.65	33.74	18.19	12.06	16.9	19.46	3.75
Merged-chr2-90542282-3	chr2	90541798	90542798	+	839.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	MIR3|SINE|MIR	38349.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	50.91	55.29	32.37	60.72	45.25	38.58	103.51	78.71	44.97
Merged-chr10-122534603-1	chr10	122534103	122535103	+	839.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	35288.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	44.62	61.75	22.2	61.4	80.71	58.68	77.1	112.31	35.6
Merged-chr5-88765694-1	chr5	88765194	88766194	+	839.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	L1ME1|LINE|L1	681.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	104.11	120.26	107.29	89.06	98.9	106.9	151.03	148.13	96.18
Merged-chr2-93162156-3	chr2	93161668	93162668	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-25380.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	2.86	5.07	7.4	8.1	7.0	5.63	3.17	8.4	5.62
Merged-chr15-6587008-3	chr15	6586512	6587512	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	7165.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	40.62	37.32	34.22	37.78	34.52	38.58	52.81	40.68	41.84
Merged-chr17-83706567-6	chr17	83706046	83707046	+	838.9722289999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 1 of 16)	intron (NM_054082, intron 1 of 16)	383.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	259.14	237.3	257.14	262.47	213.19	265.25	284.11	248.5	232.95
Merged-chrX-73574675-3	chrX	73574175	73575175	+	838.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64766.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	12.59	13.82	14.8	12.14	11.2	20.09	12.67	11.94	11.87
Merged-chr10-80245879-3	chr10	80245378	80246378	+	838.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023431)	TTS (NM_023431)	-3574.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	1.72	3.23	0.0	5.4	5.13	7.23	4.22	5.31	9.99
Merged-chr1-152168528-3	chr1	152168021	152169021	+	838.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78201.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	14.3	6.91	5.55	12.82	15.86	17.68	7.39	4.86	4.37
Merged-chr9-107526787-2	chr9	107526293	107527293	+	838.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020263, exon 36 of 39)	exon (NM_020263, exon 36 of 39)	-7152.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	5.15	2.76	3.7	1.35	1.87	0.0	3.17	1.77	2.5
Merged-chr17-33781873-4	chr17	33781418	33782418	+	838.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020581)	promoter-TSS (NM_020581)	-343.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	77.8	53.91	61.05	88.39	48.05	83.59	38.02	30.95	38.72
Merged-chr3-137969360-1	chr3	137968860	137969860	+	838.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	12189.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	18.88	16.59	15.72	24.96	18.66	11.25	11.62	18.57	8.12
Merged-chr7-28932677-3	chr7	28932203	28933203	+	838.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	29629.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	10.3	5.99	1.85	14.84	4.2	25.72	7.39	5.75	9.37
Merged-chr14-59555180-3	chr14	59554684	59555684	+	838.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42775.0	NM_001168537	71891.0	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	13.16	7.37	5.55	12.82	4.67	11.25	19.01	12.38	12.49
Merged-chr4-95163308-3	chr4	95162832	95163832	+	838.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111110.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	50.34	54.83	77.7	56.0	34.52	53.85	83.44	67.21	64.95
Merged-chr14-54750753-1	chr14	54750253	54751253	+	838.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	31133.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	24.6	29.03	28.67	27.66	23.79	49.03	32.74	29.63	18.74
Merged-chr15-9120242-3	chr15	9119733	9120733	+	838.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013787, intron 7 of 9)	intron (NM_013787, intron 7 of 9)	20221.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	9.72	7.37	2.77	5.4	9.33	1.61	2.11	4.86	1.25
Merged-chr2-62630656-3	chr2	62630164	62631164	+	838.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164477, intron 2 of 14)	intron (NM_001164477, intron 2 of 14)	15591.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	5.72	5.99	1.85	1.35	0.47	10.45	5.28	3.54	6.25
Merged-chr2-34610575-3	chr2	34609971	34610971	+	838.774597	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	B4A|SINE|B4	144761.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	100.68	124.87	87.87	98.51	112.9	103.69	91.89	114.08	75.57
Merged-chr7-7278320-3	chr7	7277808	7278808	+	838.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_003555)	promoter-TSS (NR_003555)	-19.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	41.76	49.3	27.75	40.48	32.66	36.17	50.7	40.24	33.1
Merged-chr4-120033173-2	chr4	120032693	120033693	+	838.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	CpG	-128013.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	20.59	11.06	0.0	51.28	28.46	32.15	21.12	11.5	10.62
Merged-chrX-113172902-3	chrX	113172407	113173407	+	838.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018818, intron 1 of 14)	MTD|LTR|ERVL-MaLR	12608.0	NM_018818	12662.0	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	21.74	42.39	18.5	29.01	30.79	28.94	30.63	32.28	26.23
Merged-chr1-165459657-3	chr1	165459166	165460166	+	838.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028759, intron 1 of 18)	CpG	797.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	37.76	38.25	41.62	35.76	29.39	32.15	54.92	52.62	29.98
Merged-chr11-116089196-3	chr11	116088701	116089701	+	838.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2206.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	27.46	17.05	18.5	24.96	11.2	13.66	8.45	6.19	4.37
Merged-chr1-13267619-3	chr1	13267065	13268065	+	838.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 2 of 22)	(CCG)n|Simple_repeat|Simple_repeat	104864.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	20.02	22.12	12.95	20.92	18.66	17.68	10.56	5.75	1.25
Merged-chr3-52468538-3	chr3	52468021	52469021	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-48443.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	4.58	4.61	7.4	7.42	4.2	1.61	8.45	10.17	3.75
Merged-chr2-73066752-1	chr2	73066252	73067252	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86306.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	6.29	5.53	5.55	2.02	3.27	1.61	8.45	4.42	9.37
Merged-chr4-141652045-1	chr4	141651545	141652545	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	12070.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	100.11	70.5	40.7	107.28	86.77	84.4	85.55	84.01	48.71
Merged-chr12-33332193-3	chr12	33331694	33332694	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 2 of 7)	intron (NM_001033436, intron 2 of 7)	29679.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	18.31	8.29	9.25	10.12	7.93	8.84	9.51	5.75	8.74
Merged-chr10-53431191-3	chr10	53430697	53431697	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21315.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	5.15	2.76	5.55	7.42	7.46	4.82	4.22	8.4	3.12
Merged-chr5-105138319-3	chr5	105137821	105138821	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008620, intron 1 of 10)	intron (NM_008620, intron 1 of 10)	1265.0	NM_001256005	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	72.08	52.07	54.57	28.34	19.13	16.08	66.54	72.07	35.6
Merged-chr14-120157591-1	chr14	120157091	120158091	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115156.0	NM_001001490	239283.0	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	2.86	3.23	1.85	6.07	7.46	8.04	4.22	3.98	6.25
Merged-chr9-118554577-1	chr9	118554077	118555077	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018748, intron 14 of 23)	intron (NM_018748, intron 14 of 23)	48259.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	13.16	3.69	5.55	22.94	11.66	9.65	7.39	6.19	6.87
Merged-chr10-95670057-1	chr10	95669557	95670557	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-105911.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	2.86	6.45	5.55	6.75	2.8	3.22	3.17	4.86	1.25
Merged-chr7-98535352-1	chr7	98534852	98535852	+	838.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41130.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	13.16	4.15	4.62	6.07	2.33	3.22	7.39	6.63	0.0
Merged-chr1-138044746-1	chr1	138044246	138045246	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78107.0	NR_029820	723890.0		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	4.58	2.3	5.55	7.42	1.4	1.61	1.06	3.54	1.25
Merged-chr5-21056718-1	chr5	21056218	21057218	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356591)	promoter-TSS (NM_001356591)	-807.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	135.0	122.57	61.05	149.11	143.22	103.69	135.19	152.99	65.58
Merged-chr4-34269334-1	chr4	34268834	34269834	+	838.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-219267.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	16.59	23.04	13.87	10.8	11.2	17.68	11.62	4.86	6.25
Merged-chr18-12648289-3	chr18	12647785	12648785	+	838.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	4752.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	9.72	4.61	3.7	6.07	1.4	3.22	21.12	8.84	11.87
Merged-chr18-83815810-2	chr18	83815301	83816301	+	838.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270761.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	2.86	4.15	0.92	4.05	4.67	1.61	3.17	3.1	7.49
Merged-chr7-110258499-2	chr7	110258023	110259023	+	838.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 3 of 11)	PB1D10|SINE|Alu	36820.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	20.59	32.25	14.8	44.53	17.26	12.86	14.79	11.94	8.12
Merged-chr19-5094476-3	chr19	5094045	5095045	+	838.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009920, intron 2 of 5)	intron (NM_009920, intron 2 of 5)	3976.0	NM_001302333	12794.0	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	12.59	3.69	0.0	3.37	2.33	3.22	3.17	0.44	1.87
Merged-chr8-25056636-2	chr8	25056135	25057135	+	838.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 9 of 11)	intron (NM_031257, intron 9 of 11)	-17673.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	8.01	11.52	28.67	18.22	14.0	27.33	19.01	20.34	24.98
Merged-chr3-79075234-3	chr3	79074749	79075749	+	838.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 19 of 23)	intron (NM_001099624, intron 19 of 23)	69638.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	23.45	22.58	24.05	28.34	30.79	39.39	25.35	15.48	14.99
Merged-chr10-82699795-3	chr10	82699259	82700259	+	838.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081218, intron 1 of 14)	CpG	752.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	58.92	40.55	33.3	59.38	55.05	49.03	114.07	80.47	42.47
Merged-chr15-101077755-3	chr15	101077211	101078211	+	838.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23312.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	28.6	17.05	15.72	26.31	14.93	18.49	19.01	15.03	5.0
Merged-chr5-20701637-3	chr5	20701127	20702127	+	838.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	180497.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	7.44	5.07	20.35	10.8	10.26	12.06	15.84	7.52	3.75
Merged-chr6-83417538-5	chr6	83417046	83418046	+	838.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	B1_Mus2|SINE|Alu	-16444.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	38.33	31.33	44.4	69.5	50.38	56.27	55.98	60.13	39.97
Merged-chr6-87530326-3	chr6	87529828	87530828	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2931.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	22.31	17.51	9.25	45.88	21.93	33.76	30.63	39.35	31.23
Merged-chr10-84778166-3	chr10	84777680	84778680	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024918, intron 1 of 17)	intron (NM_001024918, intron 1 of 17)	22132.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	9.72	3.23	3.7	0.0	3.73	1.61	5.28	7.07	2.5
Merged-chr2-27593499-3	chr2	27593047	27594047	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78400.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	4.0	3.69	12.95	12.14	7.93	17.68	8.45	7.52	6.25
Merged-chr2-167839438-3	chr2	167838937	167839937	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92890.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	10.87	5.99	0.0	10.12	3.73	3.22	14.79	5.75	6.25
Merged-chr2-158348140-3	chr2	158347624	158348624	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13385.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	5.72	0.92	3.7	2.7	3.73	8.04	3.17	3.1	0.0
Merged-chr16-18396698-3	chr16	18396259	18397259	+	838.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001272031, intron 1 of 16)	intron (NM_001272031, intron 1 of 16)	4196.0	NM_001272032	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	21.17	17.97	26.82	18.22	15.86	12.86	9.51	15.03	18.74
Merged-chr17-44432961-3	chr17	44432453	44433453	+	838.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244381.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	22.88	23.5	20.35	14.84	11.66	18.49	21.12	13.27	9.99
Merged-chr14-55491011-1	chr14	55490511	55491511	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024645)	promoter-TSS (NM_001024645)	-59.0	NM_001024645	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	5.15	6.45	6.47	2.02	2.33	1.61	10.56	1.77	3.75
Merged-chr6-56901315-4	chr6	56900774	56901774	+	838.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360963, intron 1 of 9)	ID4_|SINE|ID	612.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	141.87	180.63	69.37	136.29	151.62	66.71	185.89	247.61	88.68
Merged-chr1-162589702-2	chr1	162589215	162590215	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356527, intron 6 of 7)	intron (NM_001356527, intron 6 of 7)	18887.0	NM_016796	53330.0	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e|Vamp-4	vesicle-associated membrane protein 4	protein-coding	8.01	4.15	0.0	14.84	17.26	9.65	17.96	7.96	3.75
Merged-chr10-122604244-2	chr10	122603737	122604737	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34346.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	1.72	0.92	5.55	8.77	2.8	4.02	12.67	3.54	1.25
Merged-chr8-70355987-1	chr8	70355487	70356487	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2708.0	NM_001122829	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	13.16	14.75	16.65	20.24	23.33	72.34	35.91	19.46	31.23
Merged-chr1-51491981-2	chr1	51491486	51492486	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12A|DNA|TcMar-Tigger	-13587.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	36.61	31.33	34.22	21.59	23.79	42.6	44.36	34.05	38.1
Merged-chr9-58559765-1	chr9	58559265	58560265	+	838.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18825.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	5.72	4.15	3.7	28.34	30.32	22.51	9.51	12.82	8.74
Merged-chr5-66005481-3	chr5	66004981	66005981	+	838.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1196.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	22.88	17.05	23.12	34.41	9.33	17.68	15.84	19.01	17.49
Merged-chr11-75255536-3	chr11	75255028	75256028	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	intron (NM_177708, intron 1 of 1)	61535.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	44.05	34.1	17.57	57.35	59.71	56.27	60.2	99.93	56.21
Merged-chr1-94147209-3	chr1	94146655	94147655	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94602.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	28.03	22.58	27.75	19.57	20.53	20.9	25.35	18.13	17.49
Merged-chr17-67473354-3	chr17	67472851	67473851	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118860.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	12.01	22.12	5.55	25.64	18.19	16.08	19.01	18.13	20.61
Merged-chr3-61426080-3	chr3	61425590	61426590	+	838.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61583.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	12.01	11.52	1.85	6.07	7.93	11.25	16.9	7.52	12.49
Merged-chr8-46817403-3	chr8	46816895	46817895	+	838.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 5 of 7)	intron (NR_152560, intron 5 of 7)	77650.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	54.92	47.92	37.0	45.88	37.79	48.23	39.08	47.31	33.1
Merged-chr15-97884397-3	chr15	97883895	97884895	+	838.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	23901.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	7.44	6.91	5.55	8.77	1.4	0.0	2.11	2.21	1.25
Merged-chr10-51553973-3	chr10	51553482	51554482	+	838.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36478.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	6.29	3.23	5.55	12.82	6.53	8.04	7.39	3.54	3.75
Merged-chr17-48825683-3	chr17	48825199	48826199	+	838.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-106883.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	4.0	2.76	5.55	22.27	7.93	16.08	3.17	9.29	8.74
Merged-chr15-94629070-3	chr15	94628590	94629590	+	838.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178789)	promoter-TSS (NM_178789)	-95.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	6.29	1.84	0.0	9.45	1.4	1.61	11.62	2.65	2.5
Merged-chr16-38475723-4	chr16	38475176	38476176	+	838.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359898, intron 2 of 5)	intron (NM_001359898, intron 2 of 5)	16743.0	NM_009855	12519.0	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	101.83	127.18	76.77	88.39	106.36	91.63	83.44	87.55	60.58
Merged-chr14-26531989-3	chr14	26531475	26532475	+	838.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	2649.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	32.04	29.03	41.62	26.31	34.99	22.51	38.02	40.68	23.73
Merged-chr12-32793972-2	chr12	32793475	32794475	+	838.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26360.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	17.73	13.82	3.7	10.12	10.26	13.66	6.34	9.29	2.5
Merged-chr7-98314145-2	chr7	98313639	98314639	+	838.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	-4597.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	30.32	11.52	9.25	18.89	14.0	18.49	16.9	10.17	13.74
Merged-chr14-106668383-2	chr14	106667896	106668896	+	838.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-181876.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	8.58	10.14	8.32	11.47	14.0	9.65	6.34	19.9	8.74
Merged-chr1-161494485-3	chr1	161493995	161494995	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183391)	promoter-TSS (NM_183391)	-162.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	24.03	20.27	33.3	18.22	15.39	8.84	12.67	10.61	28.1
Merged-chr7-104647284-3	chr7	104646779	104647779	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147049)	promoter-TSS (NM_147049)	26.0	NM_147049	259051.0	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	1.72	1.38	0.0	5.4	2.8	0.8	4.22	0.0	0.0
Merged-chr10-77902382-3	chr10	77901855	77902855	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145152, intron 1 of 1)	CpG	181.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	5.72	2.76	7.4	5.4	1.87	3.22	2.11	0.0	1.25
Merged-chr14-47393886-1	chr14	47393386	47394386	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 15 of 18)	PB1|SINE|Alu	20026.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	18.31	16.13	7.4	32.39	16.79	25.72	6.34	4.86	6.25
Merged-chr9-123539300-3	chr9	123538801	123539801	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357485, intron 1 of 19)	intron (NM_001357485, intron 1 of 19)	9548.0	NM_030692	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	10.87	21.2	20.35	10.12	7.46	11.25	35.91	34.49	24.36
Merged-chr6-90606776-3	chr6	90606269	90607269	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	1889.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	5.15	0.92	11.1	10.12	3.27	4.82	5.28	1.77	6.25
Merged-chr3-96152074-1	chr3	96151574	96152574	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025613, intron 10 of 12)	intron (NM_001025613, intron 10 of 12)	-9896.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	14.3	5.07	20.35	20.92	22.86	19.29	19.01	6.19	7.49
Merged-chr3-69699436-3	chr3	69698881	69699881	+	838.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22674.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	26.31	28.11	22.2	82.32	52.25	51.44	92.94	83.13	54.96
Merged-chr5-96896203-1	chr5	96895703	96896703	+	838.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25069.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.58	6.45	3.7	9.45	10.26	8.04	4.22	2.21	6.87
Merged-chr3-107034954-3	chr3	107034449	107035449	+	838.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1213.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	7.44	5.07	2.77	8.77	1.87	1.61	5.28	5.75	0.0
Merged-chr17-84922145-1	chr17	84921645	84922645	+	838.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-34596.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	4.58	2.76	0.0	5.4	0.0	4.02	1.06	0.44	3.12
Merged-chr7-49762873-2	chr7	49762360	49763360	+	838.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146053, intron 3 of 5)	intron (NM_001146053, intron 3 of 5)	3348.0	NM_001146052	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	11.44	14.28	17.57	22.27	28.92	15.27	16.9	16.8	11.24
Merged-chr11-99182667-3	chr11	99182184	99183184	+	838.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27607.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	41.76	26.26	27.75	22.27	13.53	29.74	48.58	18.13	17.49
Merged-chr6-130937052-2	chr6	130936552	130937552	+	838.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	310310.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	5.72	4.61	0.0	4.05	5.13	2.41	2.11	7.07	1.25
Merged-chr4-130784964-3	chr4	130784485	130785485	+	838.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7552.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	19.45	21.2	32.37	29.01	17.73	20.09	24.29	26.97	23.11
Merged-chr8-26435572-3	chr8	26435075	26436075	+	838.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277406.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.44	9.22	6.47	4.72	12.13	24.92	6.34	7.52	6.87
Merged-chr16-94223329-5	chr16	94222811	94223811	+	838.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	intron (NM_001360045, intron 6 of 10)	66980.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	195.07	201.82	109.14	183.52	173.54	148.7	224.97	208.7	119.28
Merged-chr7-102338002-3	chr7	102337507	102338507	+	838.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	70183.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	57.78	80.18	51.8	43.86	38.72	41.8	83.44	87.11	33.72
Merged-chr16-10192922-3	chr16	10192435	10193435	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153123)	promoter-TSS (NM_153123)	29.0	NM_029253	75329.0	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	2.29	3.23	1.85	4.05	0.93	4.82	4.22	1.33	0.0
Merged-chr8-37010222-3	chr8	37009738	37010738	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	14000.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	29.75	34.56	30.52	28.34	32.66	32.96	27.46	45.54	55.58
Merged-chr11-116866352-2	chr11	116865845	116866845	+	838.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178620, intron 9 of 12)	intron (NM_178620, intron 9 of 12)	12345.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	24.6	19.81	24.05	35.09	27.99	19.29	26.4	25.2	27.48
Merged-chr8-104077204-2	chr8	104076713	104077713	+	838.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24412.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	3.43	2.76	0.0	6.07	2.8	1.61	5.28	2.21	5.0
Merged-chr11-72940981-2	chr11	72940470	72941470	+	838.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-20199.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	13.73	7.37	5.55	11.47	21.93	17.68	15.84	15.48	9.99
Merged-chr11-94198972-3	chr11	94198466	94199466	+	838.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12488.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.0	2.76	2.77	4.05	5.6	5.63	4.22	1.77	5.0
Merged-chr5-77309599-3	chr5	77309088	77310088	+	838.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153798)	promoter-TSS (NM_153798)	498.0	NM_019836	56412.0	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	24.03	16.59	17.57	20.92	28.92	27.33	16.9	21.67	11.87
Merged-chr11-96318601-3	chr11	96318103	96319103	+	838.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010459, exon 1 of 2)	5' UTR (NM_010459, exon 1 of 2)	336.0	NM_010459	15412.0	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	44.05	41.47	44.4	50.6	60.65	69.13	106.67	74.28	52.46
Merged-chr17-35302005-4	chr17	35301479	35302479	+	838.087524	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18568.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	19.45	29.03	21.27	32.39	30.79	17.68	21.12	20.34	8.74
Merged-chr12-44283536-2	chr12	44283029	44284029	+	838.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026164, exon 2 of 10)	exon (NM_026164, exon 2 of 10)	14375.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	10.3	8.29	12.95	8.1	6.53	14.47	4.22	3.1	7.49
Merged-chr9-45251618-5	chr9	45251159	45252159	+	838.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	15048.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	173.33	164.96	152.62	152.49	105.43	184.07	161.6	164.04	131.78
Merged-chr1-36709222-3	chr1	36708727	36709727	+	838.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146107, intron 1 of 10)	intron (NM_146107, intron 1 of 10)	698.0	NM_146107	226977.0	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	73.79	45.16	15.72	74.22	42.92	24.11	52.81	59.69	21.86
Merged-chr17-43538892-3	chr17	43538374	43539374	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	4765.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	7.44	15.67	12.95	18.22	7.0	40.19	8.45	9.73	11.24
Merged-chr7-66343398-3	chr7	66342910	66343910	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	38314.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	68.07	91.7	90.65	41.83	31.72	27.33	28.52	30.95	26.85
Merged-chrX-135008376-3	chrX	135007875	135008875	+	838.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175446, intron 1 of 6)	intron (NM_175446, intron 1 of 6)	834.0	NM_175446	215693.0	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	83.52	76.49	60.12	68.82	47.12	71.54	64.43	70.3	61.83
Merged-chr10-85952131-5	chr10	85951622	85952622	+	838.004761	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145422, intron 3 of 11)	intron (NM_145422, intron 3 of 11)	5671.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	20.59	38.25	12.95	34.41	27.06	33.76	34.85	35.82	21.23
Merged-chr19-10698218-1	chr19	10697718	10698718	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2550.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	29.75	26.26	31.45	14.84	19.13	19.29	28.52	17.69	37.47
Merged-chr4-33284644-3	chr4	33284144	33285144	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25667.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	33.75	18.43	13.87	12.82	7.0	14.47	8.45	10.17	7.49
Merged-chr12-79838248-1	chr12	79837748	79838748	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	11.44	11.52	12.95	14.17	11.66	8.84	3.17	6.19	5.0
Merged-chr5-140844997-1	chr5	140844497	140845497	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14566.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	13.16	8.75	9.25	16.19	17.26	29.74	2.11	1.33	0.0
Merged-chr18-14669098-1	chr18	14668598	14669598	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009280, intron 3 of 10)	intron (NM_009280, intron 3 of 10)	13816.0	NM_001161369	268996.0	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	2.29	2.3	1.85	6.07	6.53	3.22	5.28	0.88	13.74
Merged-chr6-134916976-1	chr6	134916476	134917476	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_009875	12576.0	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	35.47	59.9	37.0	46.56	42.45	24.92	28.52	17.24	24.98
Merged-chr17-5846180-3	chr17	5845687	5846687	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	L1MEd|LINE|L1	4807.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	37.76	29.95	33.3	38.46	41.05	40.99	44.36	29.18	8.74
Merged-chr9-21237266-3	chr9	21236750	21237750	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016679, exon 1 of 5)	exon (NM_016679, exon 1 of 5)	2082.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	231.68	199.06	190.54	272.59	231.85	193.71	269.33	297.58	136.15
Merged-chr2-5145977-3	chr2	5145474	5146474	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028804, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8198.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	4.58	5.99	6.47	5.4	5.6	6.43	6.34	5.75	7.49
Merged-chr18-80497028-1	chr18	80496528	80497528	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27361.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.0	2.76	3.7	1.35	4.67	6.43	3.17	1.33	1.25
Merged-chr19-32788552-1	chr19	32788052	32789052	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	30975.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	53.77	59.9	62.9	39.13	37.79	35.37	61.26	62.35	39.35
Merged-chr6-108874683-2	chr6	108874163	108875163	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	46022.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	8.58	5.07	9.25	6.75	5.13	8.04	3.17	2.21	0.62
Merged-chr3-97963691-1	chr3	97963191	97964191	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	33518.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	13.73	5.07	0.0	10.12	11.66	6.43	6.34	5.75	2.5
Merged-chr4-43431873-2	chr4	43431337	43432337	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2703.0	NM_001162381	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	5.72	4.61	0.0	6.75	2.33	0.0	4.22	4.86	3.75
Merged-chr5-116012736-2	chr5	116012240	116013240	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031869)	TTS (NM_031869)	11688.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	10.87	11.06	14.8	28.34	18.66	17.68	14.79	12.82	10.62
Merged-chr7-99953852-1	chr7	99953352	99954352	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	26606.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	6.86	11.52	12.95	4.72	7.93	22.51	7.39	3.98	5.0
Merged-chr4-20777678-1	chr4	20777178	20778178	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	990.0	NM_001290410	269513.0	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	5.72	2.76	7.4	2.02	0.47	1.61	3.17	0.0	0.0
Merged-chr7-27356850-1	chr7	27356350	27357350	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_138676)	promoter-TSS (NM_138676)	-842.0	NM_138676	192192.0	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	253.99	341.44	333.91	154.51	228.59	195.32	242.92	332.95	205.47
Merged-chr5-90415163-1	chr5	90414663	90415663	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45707.0	NM_009654	11657.0	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	18.88	11.98	4.62	20.92	15.39	4.82	19.01	10.17	6.25
Merged-chr5-115565242-3	chr5	115564796	115565796	+	838.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172719)	promoter-TSS (NM_172719)	33.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	34.32	23.04	26.82	32.39	18.19	53.05	34.85	22.55	14.36
Merged-chr7-16261219-1	chr7	16260719	16261719	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1679.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	20.02	21.2	18.5	22.94	11.2	59.48	12.67	16.8	20.61
Merged-chrX-153696215-1	chrX	153695715	153696715	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175429)	promoter-TSS (NM_175429)	65.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	21.17	23.5	37.92	32.39	21.93	30.54	22.18	26.53	14.36
Merged-chr4-59895373-1	chr4	59894873	59895873	+	838.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 8 of 8)	B2_Mm2|SINE|B2	19683.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	8.58	3.23	9.25	13.49	6.06	8.04	10.56	5.31	5.0
Merged-chr15-78878415-1	chr15	78877915	78878915	+	838.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145929, intron 1 of 16)	intron (NM_145929, intron 1 of 16)	1225.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	123.56	135.47	152.62	140.34	99.83	148.7	223.91	263.09	153.01
Merged-chr3-96596951-3	chr3	96596431	96597431	+	837.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024851, intron 1 of 1)	intron (NM_001024851, intron 1 of 1)	295.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	16.59	2.76	12.02	18.22	3.73	4.82	15.84	8.84	1.25
Merged-chr4-35219738-3	chr4	35219221	35220221	+	837.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	6159.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	39.47	73.73	48.1	43.18	40.59	32.15	61.26	78.26	40.59
Merged-chr2-124741133-2	chr2	124740619	124741619	+	837.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87538.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	65.21	61.75	49.95	62.07	51.78	61.09	47.53	50.85	49.96
Merged-chr13-115163119-3	chr13	115162597	115163597	+	837.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61133.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.0	7.37	13.87	7.42	10.26	4.82	3.17	12.38	7.49
Merged-chr11-75585317-3	chr11	75584825	75585825	+	837.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2754.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	35.47	23.04	25.9	37.11	28.92	27.33	31.69	32.28	23.73
Merged-chr7-104219331-2	chr7	104218832	104219832	+	837.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013616, intron 1 of 7)	intron (NM_001013616, intron 1 of 7)	537.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	6.29	2.76	5.55	10.12	16.33	6.43	17.96	22.11	16.86
Merged-chr1-39482357-2	chr1	39481867	39482867	+	837.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-3612.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	25.74	11.52	10.17	18.22	16.79	31.35	21.12	18.13	15.61
Merged-chr8-14997790-3	chr8	14997279	14998279	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 27 of 27)	intron (NM_001037736, intron 27 of 27)	-13246.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.43	2.3	1.85	8.1	6.06	0.0	1.06	2.21	2.5
Merged-chr9-105186908-3	chr9	105186412	105187412	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-41830.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	16.59	15.21	23.12	16.19	6.53	12.06	6.34	5.31	12.49
Merged-chr17-36145781-1	chr17	36145281	36146281	+	837.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033517, intron 1 of 3)	CpG	763.0	NR_033517	675325.0	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	1.14	5.53	3.7	27.66	23.33	17.68	24.29	17.69	7.49
Merged-chr17-79095835-3	chr17	79095361	79096361	+	837.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16D|LTR|ERVL	43955.0	NM_001316729	70536.0	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	5.15	3.23	6.47	8.1	2.8	3.22	9.51	4.86	7.49
Merged-chr5-140619632-3	chr5	140619171	140620171	+	837.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175274)	TTS (NM_175274)	12330.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	22.31	15.21	17.57	18.22	18.66	26.53	20.07	9.73	13.74
Merged-chr14-73411119-3	chr14	73410603	73411603	+	837.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25814.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	51.48	58.52	47.17	53.98	39.19	94.04	52.81	45.1	46.84
Merged-chr2-32447842-3	chr2	32447340	32448340	+	837.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-2617.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	77.8	89.39	74.0	105.93	123.16	88.42	91.89	138.4	52.46
Merged-chr17-62604508-1	chr17	62604008	62605008	+	837.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_207654, exon 5 of 5)	3' UTR (NM_207654, exon 5 of 5)	276809.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	4.0	4.61	1.85	4.05	3.27	3.22	3.17	5.75	1.25
Merged-chr5-134494386-2	chr5	134493858	134494858	+	837.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009990, exon 14 of 17)	exon (NM_009990, exon 14 of 17)	-37642.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	5.15	1.84	0.0	5.4	0.0	0.8	10.56	1.77	1.25
Merged-chr11-3125473-5	chr11	3124923	3125923	+	837.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003517, intron 1 of 6)	B1_Mus1|SINE|Alu	1402.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	10.87	17.51	7.4	15.52	10.73	10.45	9.51	6.19	7.49
Merged-chr9-124080671-3	chr9	124080159	124081159	+	837.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEy-int|LTR|ERVK	-21524.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	92.67	119.8	71.22	99.86	100.3	114.94	113.01	124.69	73.69
Merged-chr13-120259891-3	chr13	120259328	120260328	+	837.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3267.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	23.45	17.05	14.8	6.75	5.13	11.25	7.39	3.98	3.75
Merged-chr10-22059592-1	chr10	22059092	22060092	+	837.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	8487.0	NM_053264	114671.0	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	2.86	0.92	2.77	2.02	1.87	0.0	14.79	8.4	9.99
Merged-chr7-140948448-3	chr7	140947913	140948913	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053088)	TTS (NM_053088)	1826.0	NM_053088	73835.0	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	32.61	25.8	10.17	46.56	14.93	31.35	20.07	12.38	10.62
Merged-chr3-37744112-4	chr3	37743581	37744581	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19721.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	7.44	4.15	6.47	21.59	19.13	20.09	17.96	11.94	21.23
Merged-chr1-35972369-3	chr1	35971853	35972853	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96047.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	33.75	23.5	14.8	27.66	31.72	24.92	33.8	37.14	19.98
Merged-chr10-68248859-2	chr10	68248356	68249356	+	837.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	29870.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	156.17	140.08	78.62	145.74	105.9	82.79	148.92	176.87	99.92
Merged-chr13-43752622-3	chr13	43752097	43753097	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	-32515.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	32.61	30.87	37.92	29.69	34.99	24.11	35.91	23.88	14.99
Merged-chr2-157131141-3	chr2	157130703	157131703	+	837.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	4019.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	72.08	106.9	73.07	72.19	66.71	78.77	107.73	98.6	74.94
Merged-chr13-12264938-2	chr13	12264446	12265446	+	837.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6833.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	4.0	5.99	12.95	5.4	0.93	7.23	5.28	3.54	6.25
Merged-chr3-52361047-3	chr3	52360553	52361553	+	837.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92716.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.15	3.23	3.7	4.72	4.67	5.63	1.06	5.75	1.87
Merged-chr17-47738469-4	chr17	47738000	47739000	+	837.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	CpG	569.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	65.79	54.83	80.47	68.15	63.45	57.07	81.33	58.81	41.22
Merged-chr17-5521762-3	chr17	5521258	5522258	+	837.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	29158.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	25.17	18.43	29.6	27.66	31.72	31.35	28.52	13.27	18.74
Merged-chrX-163751161-3	chrX	163750669	163751669	+	837.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10163.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	10.87	8.75	9.25	18.89	7.93	8.84	16.9	10.17	6.25
Merged-chr2-128739512-1	chr2	128739012	128740012	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	40597.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	36.61	36.86	25.9	44.53	26.12	32.96	35.91	37.58	34.35
Merged-chr1-71730389-1	chr1	71729889	71730889	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77054.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	9.15	10.6	2.77	4.72	7.93	3.22	3.17	5.75	9.99
Merged-chr13-81144688-2	chr13	81144226	81145226	+	837.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	180652.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.59	12.44	11.1	29.01	13.53	20.9	15.84	12.82	14.99
Merged-chr1-43554553-2	chr1	43554030	43555030	+	837.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010879, exon 4 of 5)	exon (NM_010879, exon 4 of 5)	108779.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	5.72	4.61	7.4	9.45	7.93	8.04	8.45	2.65	7.49
Merged-chr7-143119431-3	chr7	143118862	143119862	+	837.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 1 of 15)	intron (NM_008434, intron 1 of 15)	12108.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	20.59	13.82	24.05	6.07	10.73	14.47	12.67	9.29	23.73
Merged-chr6-40236014-3	chr6	40235511	40236511	+	837.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004182, intron 2 of 2)	intron (NM_001004182, intron 2 of 2)	-89467.0	NM_023538	69923.0	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	4.58	5.53	0.0	4.72	2.8	4.02	2.11	3.1	6.25
Merged-chr11-8594779-3	chr11	8594285	8595285	+	837.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 3 of 30)	URR1A|DNA|hAT-Charlie	69750.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	18.31	14.75	4.62	22.27	14.0	8.84	13.73	14.15	5.62
Merged-chr13-94094380-2	chr13	94093867	94094867	+	837.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	36571.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	24.03	14.28	7.4	22.94	7.46	7.23	12.67	8.84	1.25
Merged-chr17-29773524-3	chr17	29773023	29774023	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56506.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	8.01	3.69	1.85	10.12	7.0	8.04	17.96	6.63	5.0
Merged-chr15-78899018-3	chr15	78898489	78899489	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316686)	promoter-TSS (NM_001316686)	-779.0	NR_133564	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	37.18	37.78	37.92	35.09	27.52	45.82	45.42	52.62	14.36
Merged-chr18-62090389-1	chr18	62089889	62090889	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89592.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	15.45	23.96	18.5	11.47	11.2	12.86	19.01	11.94	15.61
Merged-chr10-4155727-1	chr10	4155227	4156227	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172308, exon 28 of 28)	3' UTR (NM_172308, exon 28 of 28)	57393.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	2.86	4.15	0.0	1.35	4.2	3.22	1.06	1.77	3.75
Merged-chr14-65345248-3	chr14	65344754	65345754	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13422.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	98.97	182.01	107.29	105.93	83.97	147.9	110.9	168.47	113.04
Merged-chr3-82799925-1	chr3	82799425	82800425	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76558.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	8.58	12.44	11.1	12.14	8.86	12.86	7.39	7.96	5.0
Merged-chr9-114390540-4	chr9	114390026	114391026	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	186.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	21.74	8.75	16.65	20.24	18.66	19.29	19.01	4.86	14.99
Merged-chr2-126478346-1	chr2	126477846	126478846	+	837.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	13207.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	48.05	41.01	32.37	83.66	76.04	58.68	43.3	40.24	23.11
Merged-chr15-75727805-3	chr15	75727294	75728294	+	837.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20128.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	2.29	3.69	0.0	1.35	2.33	2.41	1.06	0.44	1.25
Merged-chr19-55702925-3	chr19	55702430	55703430	+	837.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045318)	promoter-TSS (NR_045318)	-726.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	62.35	62.67	67.52	66.8	43.39	80.38	33.8	36.7	31.23
Merged-chr1-136170288-3	chr1	136169787	136170787	+	837.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 30 of 34)	intron (NM_001039472, intron 30 of 34)	38897.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	6.86	4.61	0.0	5.4	1.87	7.23	3.17	2.65	7.49
Merged-chr7-135598624-3	chr7	135598118	135599118	+	837.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316680, intron 1 of 20)	intron (NM_001316680, intron 1 of 20)	5137.0	NM_001316680	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	23.45	32.72	7.4	21.59	17.26	36.17	24.29	18.57	21.23
Merged-chr17-29765292-3	chr17	29764798	29765798	+	837.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48281.0	NM_001163741	68597.0	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	2.86	6.91	0.0	7.42	2.33	4.02	20.07	4.86	9.37
Merged-chr2-116894049-3	chr2	116893528	116894528	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6124.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	15.45	11.98	10.17	10.8	7.0	5.63	17.96	8.4	4.37
Merged-chr10-118110211-3	chr10	118109723	118110723	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31564.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	40.04	13.82	21.27	29.01	16.79	28.13	28.52	16.8	11.24
Merged-chr11-54028730-3	chr11	54028230	54029230	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001330304)	promoter-TSS (NM_001330304)	-626.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	110.41	119.34	71.22	130.9	146.02	154.33	78.16	116.29	47.46
Merged-chr18-10136566-3	chr18	10136053	10137053	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009071, intron 4 of 32)	intron (NM_009071, intron 4 of 32)	45239.0	NM_009071	19877.0	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	12.01	17.51	12.95	15.52	15.39	17.68	19.01	3.98	8.74
Merged-chr18-6055793-3	chr18	6055292	6056292	+	837.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029277, intron 7 of 17)	intron (NM_029277, intron 7 of 17)	80306.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	10.3	6.91	0.92	3.37	3.27	6.43	3.17	3.98	11.24
Merged-chr2-138258122-3	chr2	138257613	138258613	+	837.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1529.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	24.03	34.1	17.57	24.96	20.53	23.31	30.63	44.22	9.99
Merged-chr16-57215690-2	chr16	57215166	57216166	+	837.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	-14195.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	160.18	176.94	102.67	151.14	132.95	102.88	133.08	164.49	79.94
Merged-chr6-115879930-3	chr6	115879434	115880434	+	837.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 5 of 28)	intron (NM_001167763, intron 5 of 28)	26406.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	9.72	4.15	6.47	21.59	11.66	9.65	17.96	10.17	9.99
Merged-chr9-40642876-4	chr9	40642328	40643328	+	837.3779910000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43136.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	38.9	23.5	20.35	47.23	33.12	36.97	23.24	8.84	1.87
Merged-chr13-44504694-4	chr13	44504188	44505188	+	837.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	64961.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	30.89	48.38	24.97	40.48	42.45	58.68	61.26	57.04	43.72
Merged-chr12-108637193-2	chr12	108636697	108637697	+	837.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	1444.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	147.59	199.06	123.02	137.64	129.69	165.58	168.99	161.39	124.91
Merged-chr5-35693787-3	chr5	35693304	35694304	+	837.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14024.0	NM_030127	78558.0	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	2.29	4.61	3.7	4.72	1.4	3.22	6.34	0.88	6.25
Merged-chr17-81703966-2	chr17	81703466	81704466	+	837.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	34421.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	110.41	94.0	94.35	103.23	61.58	90.02	95.06	109.66	79.32
Merged-chr17-26639921-1	chr17	26639421	26640421	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 8 of 9)	(A)n|Simple_repeat|Simple_repeat	-36475.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	21.17	13.82	12.95	26.31	24.72	27.33	13.73	9.73	18.74
Merged-chr14-74929013-3	chr14	74928514	74929514	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	18863.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	11.44	10.14	22.2	5.4	7.46	8.84	21.12	6.63	12.49
Merged-chr6-24984800-1	chr6	24984300	24985300	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28675.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	2.86	3.69	5.55	7.42	7.0	0.0	4.22	0.88	5.0
Merged-chr18-82529686-1	chr18	82529186	82530186	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-24777.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	35.47	61.75	42.55	4.72	0.47	4.82	7.39	4.86	3.75
Merged-chr13-81351212-1	chr13	81350712	81351712	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	Lx9|LINE|L1	281932.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	77.23	80.18	64.75	127.52	71.38	105.3	101.39	86.66	69.95
Merged-chr2-155133888-1	chr2	155133388	155134388	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	407.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	308.91	254.35	221.06	265.84	195.0	229.08	311.57	267.51	162.38
Merged-chr18-9708707-1	chr18	9708207	9709207	+	837.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	1059.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	23.45	11.98	17.57	94.46	120.83	74.75	15.84	15.03	9.37
Merged-chr1-34013559-3	chr1	34013052	34014052	+	837.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134448, intron 1 of 97)	intron (NM_134448, intron 1 of 97)	1727.0	NM_134448	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	5.15	5.99	2.77	4.05	1.87	3.22	5.28	3.1	0.0
Merged-chr15-61984503-3	chr15	61984017	61985017	+	837.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010849)	promoter-TSS (NM_010849)	-824.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	84.66	54.83	58.27	118.75	60.65	68.32	92.94	68.54	54.96
Merged-chr2-164803617-3	chr2	164803130	164804130	+	837.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133240, intron 1 of 5)	intron (NM_133240, intron 1 of 5)	1251.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	54.92	40.09	36.07	59.38	35.92	42.6	51.75	49.52	35.6
Merged-chr12-84675106-3	chr12	84674599	84675599	+	837.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23708.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	72.65	100.91	100.82	85.01	102.17	91.63	189.06	218.87	87.43
Merged-chr2-25423230-2	chr2	25422746	25423746	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013524)	promoter-TSS (NM_013524)	4.0	NM_001289456	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	22.88	28.57	52.72	35.09	28.46	49.03	50.7	36.26	27.48
Merged-chr3-107819314-1	chr3	107818814	107819814	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-57916.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	9.72	6.91	0.92	7.42	8.86	1.61	2.11	0.88	9.99
Merged-chr2-4890583-2	chr2	4890092	4891092	+	837.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	9028.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	12.01	9.22	24.97	12.14	15.39	4.82	12.67	10.17	9.37
Merged-chr10-14459994-2	chr10	14459493	14460493	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 4 of 24)	intron (NM_001002268, intron 4 of 24)	85043.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	2.86	3.23	3.7	0.67	1.87	1.61	9.51	0.44	5.0
Merged-chr3-98061259-2	chr3	98060768	98061768	+	837.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	T-rich|Low_complexity|Low_complexity	47730.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	11.44	11.98	13.87	17.54	9.33	12.06	19.01	7.96	19.98
Merged-chr1-80641460-3	chr1	80640968	80641968	+	837.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	23884.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	43.48	53.91	43.47	54.65	32.19	24.11	78.16	75.61	36.85
Merged-chr1-171382289-3	chr1	171381788	171382788	+	837.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122680, intron 2 of 7)	intron (NM_001122680, intron 2 of 7)	-6672.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	16.59	12.44	14.8	14.84	8.4	14.47	7.39	9.73	16.24
Merged-chr6-50944074-1	chr6	50943574	50944574	+	837.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	167959.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.57	0.92	0.0	3.37	0.93	6.43	11.62	4.86	7.49
Merged-chr6-99522170-3	chr6	99521652	99522652	+	837.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-12329	-1159.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	60.64	66.81	30.52	52.63	55.51	76.36	74.99	97.28	28.73
Merged-chrX-77517879-2	chrX	77517380	77518380	+	837.18335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	6653.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	17.73	11.06	3.7	17.54	5.13	6.43	13.73	11.94	9.99
Merged-chr10-75170603-3	chr10	75170092	75171092	+	837.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081412, intron 16 of 22)	intron (NM_001081412, intron 16 of 22)	-41481.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	5.72	2.3	1.85	9.45	0.47	0.0	5.28	1.33	5.0
Merged-chr7-112183435-2	chr7	112182933	112183933	+	837.174988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23951.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	1.14	0.92	3.7	0.0	3.73	0.8	1.06	0.88	1.25
Merged-chr5-123664876-3	chr5	123664383	123665383	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	19478.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	36.04	29.03	18.5	46.56	24.72	36.97	31.69	20.78	20.61
Merged-chr11-77441813-3	chr11	77441324	77442324	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22089.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	82.38	66.35	46.25	94.46	67.18	61.09	88.72	110.98	46.84
Merged-chr17-31680613-3	chr17	31680131	31681131	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278570, intron 2 of 2)	intron (NM_001278570, intron 2 of 2)	2700.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	4.58	2.76	3.7	4.05	3.73	4.82	4.22	0.44	2.5
Merged-chr15-36649930-3	chr15	36649435	36650435	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40962.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	11.44	9.22	15.72	15.52	11.66	18.49	23.24	20.78	17.49
Merged-chr7-43562917-3	chr7	43562398	43563398	+	837.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008549, intron 1 of 4)	intron (NM_001008549, intron 1 of 4)	528.0	NM_001008549	210104.0	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	131.57	146.53	137.82	112.68	118.96	135.84	168.99	188.36	117.41
Merged-chr8-108915642-2	chr8	108915145	108916145	+	837.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-21215.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	14.3	4.61	6.47	18.89	8.4	9.65	6.34	2.65	2.5
Merged-chr13-54475928-2	chr13	54475414	54476414	+	837.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-7074.0	NM_028597	73666.0	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	6.29	1.84	1.85	2.02	1.87	4.82	5.28	2.21	7.49
Merged-chr11-70074842-2	chr11	70074336	70075336	+	837.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17808.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	6.29	5.53	1.85	6.07	4.2	1.61	2.11	0.88	3.75
Merged-chr2-71043514-3	chr2	71042998	71043998	+	837.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12108.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	38.33	35.94	14.8	98.51	56.91	65.11	107.73	98.16	44.34
Merged-chr11-67125683-2	chr11	67125182	67126182	+	837.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5602.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	2.86	1.84	5.55	3.37	6.06	3.22	7.39	0.88	1.25
Merged-chr15-80225387-2	chr15	80224909	80225909	+	837.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8671.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	2.29	1.84	5.55	8.77	3.27	8.04	8.45	7.52	1.25
Merged-chr19-44344020-2	chr19	44343531	44344531	+	837.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183216, intron 5 of 5)	intron (NM_183216, intron 5 of 5)	10705.0	NM_183216	329065.0	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	9.15	16.59	8.32	17.54	19.59	20.09	28.52	29.63	17.49
Merged-chr13-48227872-3	chr13	48227374	48228374	+	837.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102303, intron 1 of 2)	CpG	-33553.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	2.86	1.84	1.85	3.37	2.33	1.61	3.17	2.21	1.25
Merged-chr4-72396653-2	chr4	72396136	72397136	+	837.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	195392.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	1.72	3.69	10.17	4.72	8.86	9.65	7.39	3.54	9.37
Merged-chr11-19018208-3	chr11	19017707	19018707	+	837.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 1 of 11)	intron (NM_010789, intron 1 of 11)	762.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	29.75	65.43	26.82	30.36	42.92	35.37	55.98	43.77	45.59
Merged-chr6-98105477-2	chr6	98104983	98105983	+	837.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	113700.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	18.31	14.75	9.25	11.47	15.86	15.27	12.67	16.36	8.12
Merged-chrX-48525583-2	chrX	48525094	48526094	+	837.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	6309.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	5.72	2.76	1.85	5.4	4.2	3.22	0.0	0.88	0.62
Merged-chr17-25320802-3	chr17	25320300	25321300	+	837.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053260, intron 3 of 5)	intron (NM_053260, intron 3 of 5)	2146.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	17.16	17.97	31.45	22.27	14.46	15.27	6.34	4.86	8.74
Merged-chr14-118692023-3	chr14	118691476	118692476	+	837.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	14243.0	NM_001163676	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	44.62	46.08	28.67	22.94	16.33	12.06	73.93	57.92	48.09
Merged-chr15-25751697-1	chr15	25751197	25752197	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-1509.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.0	1.84	6.47	5.4	3.73	4.82	8.45	0.88	5.0
Merged-chr1-180226001-3	chr1	180225508	180226508	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011183)	TTS (NM_011183)	19942.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	18.31	9.22	7.4	20.24	20.53	12.86	23.24	14.15	11.24
Merged-chr8-33897910-1	chr8	33897410	33898410	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	31953.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.0	0.46	1.85	3.37	0.47	3.22	9.51	0.88	3.12
Merged-chr17-28327828-1	chr17	28327328	28328328	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011287)	promoter-TSS (NM_011287)	-643.0	NM_011287	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	129.28	106.9	104.52	208.49	209.93	170.4	100.34	126.9	57.46
Merged-chr11-9338296-1	chr11	9337796	9338796	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 27 of 61)	L5|LINE|RTE-X	146354.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	9.72	10.6	2.77	15.52	13.53	13.66	14.79	11.94	3.75
Merged-chr13-99218612-2	chr13	99218113	99219113	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	33790.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	12.59	6.91	5.55	16.19	8.86	7.23	8.45	4.42	9.99
Merged-chr18-25461301-2	chr18	25460800	25461800	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 10 of 10)	intron (NM_001033532, intron 10 of 10)	218448.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.72	5.99	1.85	6.75	10.26	11.25	6.34	7.07	9.99
Merged-chr7-3816650-1	chr7	3816150	3817150	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	28401.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	2.86	4.61	1.85	2.7	0.93	1.61	5.28	3.54	7.49
Merged-chr12-111309348-1	chr12	111308848	111309848	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 21 of 36)	intron (NM_183016, intron 21 of 36)	38252.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	2.86	1.38	7.4	10.12	5.13	8.04	7.39	7.96	2.5
Merged-chr19-38361705-1	chr19	38361205	38362205	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-34275.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	8.01	8.29	9.25	12.82	3.27	1.61	8.45	5.75	2.5
Merged-chr19-21384083-2	chr19	21383615	21384615	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	88546.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.0	5.99	3.7	2.7	5.6	8.04	7.39	2.21	8.74
Merged-chr10-13028370-1	chr10	13027870	13028870	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19920.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	11.44	5.99	9.25	8.1	9.33	6.43	2.11	7.07	8.74
Merged-chr13-83076692-1	chr13	83076192	83077192	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-378359.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	21.17	30.87	9.25	48.58	40.12	33.76	20.07	26.97	8.12
Merged-chr15-101336998-1	chr15	101336498	101337498	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32354.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	12.01	5.99	23.12	13.49	19.13	25.72	9.51	8.84	14.99
Merged-chr6-55056250-1	chr6	55055750	55056750	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 7 of 16)	MER3|DNA|hAT-Charlie	18249.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	9.15	4.15	10.17	6.07	0.93	3.22	67.6	64.11	36.85
Merged-chr13-18782313-1	chr13	18781813	18782813	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	intron (NM_172120, intron 4 of 28)	65021.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	49.2	77.87	24.97	74.89	52.25	57.07	50.7	52.62	35.6
Merged-chrX-167203109-1	chrX	167202609	167203609	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6109.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	12.59	15.67	17.57	14.84	7.46	13.66	10.56	9.73	20.61
Merged-chr4-107731088-1	chr4	107730588	107731588	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46926.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	2.86	2.3	3.7	2.02	4.67	6.43	7.39	0.44	2.5
Merged-chr11-5261222-1	chr11	5260722	5261722	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032396, intron 1 of 8)	CpG	388.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	46.91	12.9	11.1	63.42	13.06	29.74	41.19	14.59	14.36
Merged-chr10-77540002-1	chr10	77539502	77540502	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008404, intron 1 of 15)	intron (NM_008404, intron 1 of 15)	9654.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	35.47	36.4	32.37	26.31	30.79	56.27	42.25	46.43	28.73
Merged-chr11-98795813-3	chr11	98795324	98796324	+	837.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001361932, exon 1 of 3)	5' UTR (NM_001361932, exon 1 of 3)	308.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	167.04	120.73	210.89	130.22	114.29	169.6	185.89	136.19	132.4
Merged-chr2-126491637-2	chr2	126491149	126492149	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080944)	promoter-TSS (NM_001080944)	-96.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.86	12.44	7.4	15.52	15.86	18.49	5.28	10.17	5.0
Merged-chr16-57431476-1	chr16	57430976	57431976	+	837.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	78199.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.43	0.0	11.1	2.02	1.4	0.0	13.73	6.19	18.74
Merged-chr18-69627820-2	chr18	69627318	69628318	+	837.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	281658.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	12.01	14.75	16.65	15.52	7.93	10.45	36.97	33.16	13.74
Merged-chr10-7923650-3	chr10	7923152	7924152	+	836.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	29413.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	18.88	26.73	17.57	25.64	16.79	9.65	14.79	17.24	20.61
Merged-chr19-40660637-4	chr19	40660118	40661118	+	836.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	848.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	254.56	253.43	213.66	307.0	277.11	242.74	339.04	399.72	227.33
Merged-chr10-14188151-3	chr10	14187630	14188630	+	836.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	221751.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	10.87	12.9	7.4	19.57	16.33	12.86	23.24	9.29	3.75
Merged-chr19-32278018-2	chr19	32277518	32278518	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-67005.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	22.31	21.2	7.4	33.74	17.73	21.7	14.79	14.59	9.99
Merged-chr19-10740899-2	chr19	10740398	10741398	+	836.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_027805)	promoter-TSS (NR_027805)	-49.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	25.17	6.91	5.55	15.52	5.13	8.04	10.56	9.73	3.75
Merged-chr1-172455500-2	chr1	172455018	172456018	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19842.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	53.77	47.0	37.0	93.11	59.71	65.91	95.06	116.73	75.57
Merged-chr12-34486133-2	chr12	34485634	34486634	+	836.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	42755.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	16.59	18.89	38.85	17.54	16.79	19.29	12.67	17.69	9.37
Merged-chr6-51663377-3	chr6	51662855	51663855	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	118062.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	5.72	5.99	6.47	10.12	8.4	4.82	21.12	14.15	18.11
Merged-chr3-144699780-3	chr3	144699279	144700279	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	20556.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	142.44	165.42	108.22	161.26	118.03	94.85	155.26	215.34	116.79
Merged-chr10-30718329-3	chr10	30717825	30718825	+	836.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-62458.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	25.74	41.47	24.05	35.09	25.19	27.33	39.08	40.68	23.73
Merged-chr2-12053928-2	chr2	12053419	12054419	+	836.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247327.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	41.76	51.15	44.4	39.81	30.32	41.8	73.93	41.12	58.71
Merged-chr14-67933280-3	chr14	67932766	67933766	+	836.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	CpG	306.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	58.92	44.7	34.22	47.23	41.99	58.68	49.64	25.2	23.11
Merged-chr2-102898841-3	chr2	102898385	102899385	+	836.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	2780.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	41.76	40.55	49.95	46.56	33.59	51.44	35.91	46.43	44.34
Merged-chr14-102907112-3	chr14	102906624	102907624	+	836.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75508.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	71.51	123.95	115.62	80.97	72.31	124.59	99.28	113.19	87.43
Merged-chr6-120023928-3	chr6	120023409	120024409	+	836.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	L3|LINE|CR1	10402.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	58.92	82.02	48.1	72.19	41.99	48.23	84.49	59.25	43.72
Merged-chr11-37136648-2	chr11	37136156	37137156	+	836.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.43	1.38	0.0	1.35	3.27	2.41	2.11	4.42	5.62
Merged-chr4-156032149-3	chr4	156031640	156032640	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5818.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	17.16	18.43	36.07	26.31	11.66	18.49	45.42	60.58	34.97
Merged-chr19-53170850-3	chr19	53170347	53171347	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	26850.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	2.29	5.99	3.7	1.35	4.2	6.43	1.06	3.98	1.25
Merged-chr14-31337531-3	chr14	31337024	31338024	+	836.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360187, intron 1 of 20)	intron (NM_001360187, intron 1 of 20)	886.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	88.67	75.11	58.27	77.59	57.38	88.42	84.49	119.83	36.85
Merged-chr17-30550180-2	chr17	30549680	30550680	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	B3A|SINE|B2	26107.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	65.79	75.11	116.54	20.92	19.59	10.45	38.02	39.8	13.74
Merged-chr11-114852519-3	chr11	114851998	114852998	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_147217, intron 1 of 3)	CpG	468.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	86.95	84.78	101.74	112.0	95.63	126.19	92.94	119.39	66.2
Merged-chr3-86884178-2	chr3	86883682	86884682	+	836.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	36702.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	2.29	5.07	5.55	6.75	4.67	12.86	3.17	3.1	1.25
Merged-chr3-21953635-3	chr3	21953120	21954120	+	836.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123032.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	147.59	150.22	98.97	163.28	160.48	120.57	164.76	180.4	78.69
Merged-chr10-69888626-3	chr10	69888128	69889128	+	836.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170729, intron 16 of 40)	intron (NM_170729, intron 16 of 40)	-36904.0	NM_170687	11735.0	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	6.86	4.61	3.7	5.4	8.86	12.86	9.51	6.63	8.74
Merged-chr8-70720863-3	chr8	70720327	70721327	+	836.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195253, intron 2 of 3)	B1_Mm|SINE|Alu	2284.0	NM_001195253	100502950.0	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	70.93	79.72	43.47	87.04	84.9	93.24	78.16	106.56	54.33
Merged-chr16-18423274-3	chr16	18422773	18423773	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	intron (NM_007744, intron 1 of 4)	-3144.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	41.19	60.36	51.8	48.58	56.45	46.62	48.58	67.65	36.85
Merged-chrX-99067413-3	chrX	99066902	99067902	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 5 of 13)	intron (NM_199018, intron 5 of 13)	24821.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	10.3	7.37	9.25	8.1	7.0	9.65	11.62	6.63	9.99
Merged-chr4-59594703-3	chr4	59594140	59595140	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301367, intron 5 of 11)	intron (NM_001301367, intron 5 of 11)	13077.0	NM_024255	72479.0	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	15.45	23.96	22.2	22.27	12.13	16.08	45.42	46.43	33.1
Merged-chr4-11235691-3	chr4	11235187	11236187	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159595, intron 8 of 26)	intron (NM_001159595, intron 8 of 26)	18572.0	NM_178112	72656.0	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	24.6	24.88	28.67	21.59	18.66	12.86	24.29	19.46	19.98
Merged-chrX-169326144-3	chrX	169325654	169326654	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361166, intron 3 of 5)	RMER6A|LTR|ERVK	5759.0	NM_001361166	101055907.0		NM_001361166		Gm15246	-	predicted gene 15246	protein-coding	21.17	21.2	2.77	26.31	18.66	9.65	14.79	10.61	12.49
Merged-chr12-80922161-3	chr12	80921734	80922734	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	2213.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	21.74	15.21	19.42	8.77	6.06	16.08	12.67	8.84	12.49
Merged-chr14-67184206-2	chr14	67183689	67184689	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49103.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	2.29	3.69	3.7	4.05	1.4	4.82	2.11	0.0	8.12
Merged-chr16-77393688-1	chr16	77393188	77394188	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	64360.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	5.72	6.45	5.55	6.75	4.67	2.41	1.06	1.33	5.0
Merged-chr5-23878456-1	chr5	23877956	23878956	+	836.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	26223.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	6.86	7.37	5.55	4.05	7.0	6.43	7.39	9.29	9.99
Merged-chr12-4151202-3	chr12	4150706	4151706	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	17053.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	23.45	24.42	22.2	43.18	49.92	59.48	33.8	30.95	14.36
Merged-chr2-59042854-3	chr2	59042360	59043360	+	836.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	117823.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.58	1.84	3.7	2.02	4.2	12.86	4.22	1.77	1.25
Merged-chr8-68557092-1	chr8	68556592	68557592	+	836.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001252623, exon 4 of 11)	5' UTR (NM_001252623, exon 4 of 11)	178054.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	1.72	2.3	1.85	6.75	4.2	4.82	4.22	3.1	9.99
Merged-chr14-65342742-2	chr14	65342242	65343242	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15934.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	21.74	27.19	29.6	29.01	26.59	39.39	27.46	27.86	18.74
Merged-chr2-166703129-2	chr2	166702614	166703614	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	10718.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	22.88	23.96	11.1	24.96	26.12	28.13	27.46	14.59	18.74
Merged-chr17-33978096-2	chr17	33977590	33978590	+	836.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_004446, intron 2 of 5)	CpG-6269	701.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	85.81	36.4	24.05	114.03	62.51	43.4	104.56	75.61	49.96
Merged-chr7-3643641-3	chr7	3643146	3644146	+	836.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	48.05	63.13	74.0	28.34	39.65	63.5	59.15	56.6	54.96
Merged-chr12-3861898-3	chr12	3861410	3862410	+	836.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045884, exon 2 of 4)	non-coding (NR_045884, exon 2 of 4)	334.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	37.18	24.88	18.5	41.83	32.19	24.11	44.36	31.39	9.99
Merged-chr14-54386159-1	chr14	54385659	54386659	+	836.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	23313.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	56.63	74.19	57.35	71.52	78.37	69.13	32.74	21.67	26.85
Merged-chr18-77801120-3	chr18	77800625	77801625	+	836.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-4735.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	21.74	15.67	26.82	16.19	11.2	32.96	16.9	22.99	18.74
Merged-chr1-80722854-3	chr1	80722360	80723360	+	836.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35693.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	22.31	21.66	18.5	13.49	13.53	14.47	19.01	19.01	13.12
Merged-chr3-8998515-3	chr3	8998016	8999016	+	836.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5688.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	48.05	57.6	20.35	45.21	39.19	41.8	30.63	34.49	29.98
Merged-chr16-90456860-3	chr16	90456299	90457299	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015755, intron 4 of 10)	intron (NM_015755, intron 4 of 10)	70402.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	9.72	7.83	16.65	14.17	6.06	12.86	7.39	3.1	7.49
Merged-chr13-52820494-2	chr13	52820008	52821008	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63303.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	5.72	3.23	4.62	12.82	9.8	24.11	7.39	4.86	8.74
Merged-chr9-40575228-2	chr9	40574745	40575745	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43862.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.29	4.61	7.4	4.72	3.27	4.02	28.52	22.55	17.49
Merged-chrX-21740055-2	chrX	21739567	21740567	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020049, intron 13 of 13)	intron (NM_020049, intron 13 of 13)	25167.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	3.43	3.69	3.7	2.7	3.27	4.82	6.34	9.73	6.25
Merged-chr2-32744827-3	chr2	32744350	32745350	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001252547, exon 3 of 11)	exon (NM_001252547, exon 3 of 11)	-3834.0	NM_027529	70730.0	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	8.58	1.84	1.85	8.77	0.93	8.84	4.22	4.42	3.75
Merged-chr13-63563278-2	chr13	63562795	63563795	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008957, intron 2 of 23)	CpG	2440.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	8.58	0.46	1.85	18.22	8.4	5.63	15.84	5.75	6.87
Merged-chr6-71878170-2	chr6	71877644	71878644	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30618.0	NR_155285	69956.0	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	4.0	2.76	3.7	2.7	3.27	3.22	2.11	1.77	0.0
Merged-chr10-122597490-1	chr10	122596990	122597990	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27599.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	3.43	4.61	0.0	12.14	5.13	14.47	4.22	8.4	12.49
Merged-chr19-53423582-3	chr19	53423092	53424092	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32958.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	12.59	15.67	11.1	22.94	15.86	12.86	9.51	8.84	3.75
Merged-chr17-45590784-1	chr17	45590284	45591284	+	836.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199113, intron 3 of 13)	intron (NM_001199113, intron 3 of 13)	1609.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	26.31	23.04	21.27	34.41	24.26	51.44	31.69	27.41	36.22
Merged-chr11-71888678-2	chr11	71888180	71889180	+	836.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	51442.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	7.44	8.29	5.55	4.05	3.27	14.47	9.51	3.98	12.49
Merged-chr18-42011072-3	chr18	42010562	42011562	+	836.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12013.0	NM_001033426	332309.0	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	2.86	1.38	5.55	6.75	2.33	0.0	1.06	3.1	1.25
Merged-chr2-43555779-3	chr2	43555276	43556276	+	836.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289593, intron 1 of 12)	intron (NM_001289593, intron 1 of 12)	451.0	NM_027552	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	31.46	28.11	22.2	26.31	25.66	18.49	28.52	18.57	11.87
Merged-chr3-10419098-3	chr3	10418575	10419575	+	836.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21055.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	4.58	4.61	15.72	25.64	21.93	6.43	5.28	5.75	5.0
Merged-chr18-84092362-4	chr18	84091935	84092935	+	836.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	4277.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	36.04	30.87	24.97	20.92	29.86	54.66	44.36	50.85	26.85
Merged-chr10-41682930-3	chr10	41682423	41683423	+	836.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 5 of 47)	B3A|SINE|B2	33540.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	6.86	2.76	1.85	4.72	0.93	0.0	3.17	1.77	3.75
Merged-chr7-88318686-3	chr7	88318183	88319183	+	836.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40598.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	32.61	30.87	37.92	22.27	12.13	40.99	21.12	25.2	18.11
Merged-chr2-58155960-8	chr2	58155517	58156517	+	836.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	4105.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	55.49	44.24	23.12	70.17	57.38	79.58	85.55	75.17	53.08
Merged-chr11-103419823-2	chr11	103419335	103420335	+	836.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7171.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	113.84	98.61	72.15	109.98	75.11	123.78	152.09	152.99	68.07
Merged-chr8-70373061-3	chr8	70372583	70373583	+	836.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016685)	promoter-TSS (NM_016685)	-465.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	4.58	4.61	0.0	7.42	3.27	4.82	10.56	2.21	3.75
Merged-chr8-115537021-2	chr8	115536525	115537525	+	836.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169869.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	2.86	8.75	0.0	2.7	7.0	12.86	7.39	3.1	8.12
Merged-chr7-108930162-2	chr7	108929670	108930670	+	836.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175532)	promoter-TSS (NM_175532)	-12.0	NM_175532	244202.0	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	2.86	2.76	1.85	6.75	4.67	0.8	12.67	17.24	6.25
Merged-chr5-136919097-3	chr5	136918579	136919579	+	836.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015555)	promoter-TSS (NR_015555)	-67.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	21.17	38.71	45.32	46.56	33.59	37.78	28.52	19.9	18.11
Merged-chr7-122099321-3	chr7	122098831	122099831	+	836.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153798, intron 1 of 3)	intron (NR_153798, intron 1 of 3)	2517.0	NR_153798	70316.0	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	4.58	7.37	3.7	10.8	5.13	4.82	7.39	2.65	5.0
Merged-chr16-92714983-3	chr16	92714490	92715490	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-17661.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	24.03	23.04	6.47	42.51	35.92	39.39	17.96	10.17	20.61
Merged-chr14-62354582-3	chr14	62354079	62355079	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22511.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	12.01	9.68	1.85	15.52	8.4	12.06	8.45	7.96	11.24
Merged-chr8-14873208-3	chr8	14872717	14873717	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15319.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	14.3	11.98	12.02	22.94	21.93	12.86	24.29	18.13	9.37
Merged-chr2-117852127-3	chr2	117851629	117852629	+	836.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	30201.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	52.63	31.79	40.7	36.43	28.46	59.48	49.64	67.21	29.98
Merged-chr19-37307976-2	chr19	37307475	37308475	+	836.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031156, intron 10 of 23)	L1M5|LINE|L1	22638.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	31.46	34.1	29.6	36.43	35.92	40.99	55.98	52.18	44.34
Merged-chr15-27718912-3	chr15	27718446	27719446	+	836.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A|LTR|ERVK	-37404.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	6.86	4.61	3.7	10.8	4.2	4.82	3.17	2.65	6.25
Merged-chr19-58214034-2	chr19	58213559	58214559	+	836.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-82145.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	11.44	17.97	12.95	12.82	17.26	9.65	6.34	3.54	1.25
Merged-chr17-27083802-2	chr17	27083303	27084303	+	836.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080553, intron 3 of 57)	intron (NM_080553, intron 3 of 57)	-7442.0	NR_106142	102465779.0		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	6.86	9.22	12.95	10.8	17.26	20.9	6.34	2.21	10.62
Merged-chr5-92489156-1	chr5	92488656	92489656	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	16501.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	96.68	85.71	91.57	109.3	78.37	122.18	119.35	96.39	44.34
Merged-chr11-118149717-1	chr11	118149217	118150217	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20498.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	15.45	14.28	17.57	45.21	46.18	70.73	16.9	13.71	35.6
Merged-chr14-14351742-3	chr14	14351236	14352236	+	836.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 9 of 11)	intron (NM_008369, intron 9 of 11)	5241.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	22.88	17.97	12.95	8.77	7.93	20.9	8.45	20.78	24.36
Merged-chr17-45752265-2	chr17	45751773	45752773	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17767.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	26.31	6.91	15.72	20.92	10.73	19.29	30.63	13.27	7.49
Merged-chr19-28454844-1	chr19	28454344	28455344	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-223380.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	4.58	5.99	10.17	11.47	7.0	10.45	0.0	4.42	7.49
Merged-chr4-16103117-1	chr4	16102617	16103617	+	836.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60526.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	18.88	12.44	20.35	18.22	15.39	15.27	14.79	14.59	14.99
Merged-chr12-85686965-5	chr12	85686446	85687446	+	836.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016767, exon 1 of 3)	exon (NM_016767, exon 1 of 3)	226.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	70.36	82.48	57.35	108.63	104.03	83.59	119.35	71.19	56.21
Merged-chr2-151563714-2	chr2	151563216	151564216	+	836.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8907.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	9.15	5.53	7.4	6.07	8.4	8.04	2.11	5.31	5.0
Merged-chr6-108213797-3	chr6	108213279	108214279	+	836.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 1 of 61)	intron (NM_010585, intron 1 of 61)	683.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	30.89	24.88	10.17	32.39	20.06	20.9	38.02	41.12	25.61
Merged-chr17-56808722-3	chr17	56808208	56809208	+	836.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	22300.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	4.58	3.23	1.85	4.72	4.2	0.0	1.06	0.44	2.5
Merged-chr1-136683332-3	chr1	136682834	136683834	+	836.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045324)	promoter-TSS (NR_045324)	-62.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	48.62	59.9	31.45	70.85	58.31	87.61	38.02	58.81	51.84
Merged-chr18-65382011-1	chr18	65381511	65382511	+	836.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 1 of 12)	intron (NM_001037294, intron 1 of 12)	11877.0	NM_001037294	225638.0	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	7.44	5.53	3.7	4.05	9.8	4.82	1.06	6.63	3.75
Merged-chr14-47647928-2	chr14	47647424	47648424	+	836.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1387.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	54.92	70.04	29.6	33.06	44.32	44.21	41.19	41.56	28.1
Merged-chr9-118557080-2	chr9	118556574	118557574	+	836.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-49635.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	11.44	7.83	7.4	42.51	37.32	25.72	9.51	5.31	5.0
Merged-chr5-16468396-2	chr5	16467895	16468895	+	836.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-85100.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	21.74	42.39	30.52	36.43	24.26	34.56	44.36	40.68	19.98
Merged-chr14-62252173-3	chr14	62251671	62252671	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40808.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.72	7.83	6.47	10.12	5.6	6.43	9.51	4.42	1.87
Merged-chr9-37530209-3	chr9	37529696	37530696	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2107.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	9.72	3.23	2.77	3.37	2.33	1.61	2.11	3.98	1.25
Merged-chr13-58544237-3	chr13	58543760	58544760	+	836.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66617.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	6.86	5.99	8.32	9.45	2.33	1.61	7.39	5.75	1.25
Merged-chr8-83900026-3	chr8	83899523	83900523	+	836.214294	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181039)	promoter-TSS (NM_181039)	-75.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	5.72	3.69	0.0	6.07	2.33	0.0	8.45	2.21	2.5
Merged-chrX-74075054-1	chrX	74074554	74075554	+	836.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081979, intron 1 of 2)	intron (NM_001081979, intron 1 of 2)	10636.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	22.31	17.97	14.8	34.41	33.12	23.31	50.7	38.03	11.24
Merged-chr17-40869374-3	chr17	40868872	40869872	+	836.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER67C|LTR|ERV1	11186.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	15.45	15.21	20.35	2.7	4.67	0.0	9.51	9.29	6.87
Merged-chr5-100550472-1	chr5	100549972	100550972	+	836.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21733.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	5.15	11.06	7.4	8.1	5.6	6.43	14.79	7.07	7.49
Merged-chr5-96948955-2	chr5	96948454	96949454	+	836.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27682.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	17.16	12.9	11.1	43.18	34.06	24.92	25.35	24.76	5.0
Merged-chr14-46955220-2	chr14	46954734	46955734	+	836.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105813)	promoter-TSS (NR_105813)	-306.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	6.86	10.14	14.8	19.57	13.06	24.92	36.97	31.84	20.61
Merged-chr15-95883814-2	chr15	95883306	95884306	+	836.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-53734.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	12.59	11.06	11.1	21.59	7.0	19.29	14.79	15.92	3.75
Merged-chr14-61678299-3	chr14	61677813	61678813	+	836.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	4060.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	87.52	90.31	52.72	110.65	86.77	46.62	60.2	90.2	37.47
Merged-chr5-104982680-3	chr5	104982180	104983180	+	836.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030239)	promoter-TSS (NM_030239)	37.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	27.46	37.78	40.7	33.06	27.06	53.85	64.43	49.52	35.6
Merged-chr3-131702081-2	chr3	131701579	131702579	+	836.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136047.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	2.86	5.53	6.47	6.07	6.06	10.45	13.73	13.27	5.0
Merged-chr1-153543682-2	chr1	153543186	153544186	+	836.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6028.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	18.31	18.43	28.67	30.36	21.93	22.51	10.56	7.07	4.37
Merged-chr7-30417802-4	chr7	30417344	30418344	+	836.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011662)	TTS (NM_011662)	2010.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	75.51	101.37	80.47	67.47	55.05	79.58	116.18	94.18	87.43
Merged-chr19-29442637-3	chr19	29442125	29443125	+	836.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	31706.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	23.45	15.21	22.2	21.59	14.93	19.29	26.4	29.63	28.1
Merged-chr13-24501644-4	chr13	24501151	24502151	+	836.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80538.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	9.15	5.07	1.85	8.1	7.0	4.82	3.17	4.42	1.25
Merged-chr11-85671320-1	chr11	85670820	85671820	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	48424.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	32.61	30.41	31.45	45.21	55.98	37.78	27.46	25.65	11.87
Merged-chr12-103164736-2	chr12	103164261	103165261	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 42 of 48)	intron (NM_001081017, intron 42 of 48)	77385.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	13.16	7.37	1.85	5.4	9.33	3.22	8.45	4.42	1.25
Merged-chr1-171632703-1	chr1	171632203	171633203	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_144539, exon 8 of 8)	3' UTR (NM_144539, exon 8 of 8)	9197.0	NR_106151	102465784.0		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	33.75	27.19	34.22	27.66	27.99	40.99	21.12	30.95	36.22
Merged-chr19-21035769-2	chr19	21035263	21036263	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68947.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	20.59	41.47	24.97	40.48	41.99	75.56	34.85	28.3	51.21
Merged-chr7-141195019-3	chr7	141194523	141195523	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	-120.0	NM_153777	70552.0	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	17.16	10.14	10.17	10.12	5.6	18.49	5.28	7.96	1.25
Merged-chr6-5323508-1	chr6	5323008	5324008	+	836.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-25135.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	3.43	4.61	3.7	6.75	1.87	3.22	30.63	24.76	16.86
Merged-chr7-59322943-1	chr7	59322443	59323443	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_146211, intron 166 of 171)	ORR1F|LTR|ERVL-MaLR	24481.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	1.72	4.61	3.7	7.42	1.87	1.61	5.28	2.21	2.5
Merged-chr13-28870884-1	chr13	28870384	28871384	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	14538.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	12.59	4.61	9.25	19.57	11.2	8.04	2.11	1.77	8.12
Merged-chr8-68993506-3	chr8	68992957	68993957	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95279.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	38.9	32.25	48.1	53.3	38.72	45.01	20.07	15.48	6.87
Merged-chr8-80493033-1	chr8	80492533	80493533	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1012.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	6.29	5.07	6.47	6.75	3.73	8.04	8.45	3.1	1.25
Merged-chr19-32304250-2	chr19	32303733	32304733	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	45083.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	9.15	9.68	7.4	5.4	4.67	6.43	4.22	2.21	5.0
Merged-chr5-105498906-2	chr5	105498406	105499406	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-20565.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	17.16	17.05	19.42	24.29	18.66	21.7	5.28	1.77	1.87
Merged-chr7-101383533-1	chr7	101383033	101384033	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	-1993.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	327.21	319.32	251.59	369.07	277.11	224.26	222.86	295.81	173.62
Merged-chr11-100805657-1	chr11	100805157	100806157	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113563, intron 2 of 18)	intron (NM_001113563, intron 2 of 18)	16913.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	4.0	3.23	14.8	15.52	7.93	9.65	6.34	3.98	9.37
Merged-chr17-34115012-1	chr17	34114512	34115512	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_037970, exon 7 of 13)	non-coding (NR_037970, exon 7 of 13)	4888.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	23.45	12.44	10.17	17.54	3.73	12.86	12.67	9.73	13.74
Merged-chr13-92968630-2	chr13	92968126	92969126	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104678.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	17.16	5.53	28.67	5.4	3.73	8.04	15.84	13.27	14.99
Merged-chr5-29852679-1	chr5	29852179	29853179	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116743.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	27.46	28.57	39.77	45.88	40.59	50.64	31.69	32.28	24.36
Merged-chr5-92127001-1	chr5	92126501	92127501	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10724.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	9.72	6.45	12.95	25.64	17.26	28.94	16.9	7.52	14.36
Merged-chr6-109940566-1	chr6	109940066	109941066	+	836.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-704946.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.0	0.0	0.0	0.67	1.87	4.82	1.06	1.33	5.0
Merged-chr7-80180657-3	chr7	80180149	80181149	+	836.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6192.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	40.62	35.94	35.15	20.92	9.33	20.9	79.21	101.26	39.97
Merged-chr3-96230596-2	chr3	96230107	96231107	+	835.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	8520.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	10.3	7.37	0.0	8.77	4.67	0.0	9.51	3.98	6.87
Merged-chr15-81199614-3	chr15	81199170	81200170	+	835.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8817.0	NR_015603	67638.0	Mm.390832	NM_026288	ENSMUSG00000047938	4930483J18Rik	-	RIKEN cDNA 4930483J18 gene	ncRNA	45.19	48.84	44.4	33.74	43.39	34.56	60.2	58.81	31.23
Merged-chr6-149343966-3	chr6	149343431	149344431	+	835.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34517.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	6.86	11.06	12.95	12.82	5.13	12.86	11.62	15.03	16.86
Merged-chr8-75076529-2	chr8	75075990	75076990	+	835.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17128.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	26.89	25.8	22.2	24.29	30.79	16.88	30.63	27.86	30.6
Merged-chr10-70150895-3	chr10	70150392	70151392	+	835.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 2 of 8)	intron (NM_001111121, intron 2 of 8)	53771.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	12.59	8.75	9.25	23.62	26.59	18.49	22.18	15.92	5.62
Merged-chr19-46709213-2	chr19	46708722	46709722	+	835.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020577, intron 4 of 10)	intron (NM_020577, intron 4 of 10)	1779.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	11.44	11.06	15.72	18.89	18.19	23.31	4.22	1.33	6.25
Merged-chr10-80139072-3	chr10	80138573	80139573	+	835.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036582, intron 1 of 10)	CpG	294.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	25.17	7.37	0.0	20.24	9.33	12.86	7.39	5.31	0.62
Merged-chr10-19957989-3	chr10	19957497	19958497	+	835.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	MLT1A0|LTR|ERVL-MaLR	23471.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	86.38	104.6	61.97	72.87	67.18	67.52	55.98	49.96	45.59
Merged-chr10-115311451-3	chr10	115310939	115311939	+	835.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	4152.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	9.72	7.83	4.62	11.47	12.6	18.49	11.62	7.07	9.99
Merged-chr10-98708384-3	chr10	98707884	98708884	+	835.8555299999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-206258.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	49.2	51.15	20.35	29.01	31.26	24.11	31.69	45.54	27.48
Merged-chr11-83271487-5	chr11	83270977	83271977	+	835.84668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15249.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	148.16	146.53	49.02	151.14	135.75	79.58	146.81	130.44	61.83
Merged-chr11-116436122-2	chr11	116435630	116436630	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	1917.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	119.56	110.59	87.87	129.55	77.44	122.98	165.82	185.27	114.29
Merged-chr15-13172436-2	chr15	13171933	13172933	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	1242.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.86	3.23	9.25	2.02	1.87	4.82	2.11	3.98	1.25
Merged-chr4-102793025-2	chr4	102792519	102793519	+	835.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	32884.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	44.62	46.08	44.4	66.12	55.51	65.11	52.81	47.31	24.36
Merged-chr3-40699035-2	chr3	40698531	40699531	+	835.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175515, intron 14 of 15)	intron (NM_175515, intron 14 of 15)	-9840.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	6.86	4.61	11.1	9.45	11.2	22.51	15.84	12.82	16.24
Merged-chr10-7470253-3	chr10	7469757	7470757	+	835.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029975, intron 1 of 5)	IAPEY4_LTR|LTR|ERVK	3220.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	21.17	25.8	34.22	39.81	29.86	24.11	44.36	30.51	14.99
Merged-chr12-70494998-3	chr12	70494486	70495486	+	835.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	41832.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.72	3.23	1.85	3.37	2.8	1.61	4.22	4.42	1.87
Merged-chr17-50729745-2	chr17	50729264	50730264	+	835.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31083.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	8.58	5.07	11.1	7.42	3.73	3.22	10.56	0.88	5.0
Merged-chr11-61529563-3	chr11	61529072	61530072	+	835.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252188, intron 7 of 10)	intron (NM_001252188, intron 7 of 10)	24428.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	30.32	24.88	36.07	34.41	18.66	26.53	14.79	17.69	10.62
Merged-chr10-128803894-2	chr10	128803414	128804414	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358267)	promoter-TSS (NM_001358267)	53.0	NM_001358267	73827.0	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	82.38	55.75	34.22	76.92	50.38	80.38	67.6	48.64	39.35
Merged-chrX-10108730-2	chrX	10108230	10109230	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016911, intron 1 of 9)	intron (NM_016911, intron 1 of 9)	8931.0	NM_016911	51795.0	Mm.1927	NM_016911	ENSMUSG00000090084	Srpx	drs|drs-1|drs-2|mDRS-1|mDRS-2	sushi-repeat-containing protein	protein-coding	2.86	0.92	5.55	4.05	1.87	6.43	9.51	1.77	2.5
Merged-chrX-155596596-2	chrX	155596085	155597085	+	835.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	B3|SINE|B2	26742.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	4.58	2.76	0.0	3.37	1.4	5.63	1.06	5.31	0.0
Merged-chr6-26764911-3	chr6	26764422	26765422	+	835.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	833496.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	5.15	1.38	0.92	8.77	4.67	4.82	5.28	1.33	5.0
Merged-chr4-97910590-3	chr4	97910080	97911080	+	835.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	132954.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	12.59	7.37	10.17	11.47	4.67	1.61	9.51	3.54	3.12
Merged-chr10-60351462-3	chr10	60350969	60351969	+	835.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	4618.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	81.23	52.99	55.5	79.62	41.99	52.25	76.05	58.81	51.21
Merged-chr10-68058131-1	chr10	68057631	68058631	+	835.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1|DNA|hAT-Charlie	78561.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	5.72	5.07	5.55	7.42	7.93	14.47	5.28	3.1	5.0
Merged-chr4-41073599-3	chr4	41073105	41074105	+	835.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24578.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	8.58	8.75	7.4	14.84	7.0	10.45	10.56	10.17	18.74
Merged-chr8-11462370-1	chr8	11461870	11462870	+	835.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15559.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	131.57	111.51	112.84	143.04	121.29	163.17	165.82	104.79	80.56
Merged-chr9-37230051-3	chr9	37229542	37230542	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020258, exon 18 of 18)	3' UTR (NM_020258, exon 18 of 18)	21726.0	NM_001310096	66279.0	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	22.31	17.05	7.4	14.17	5.6	11.25	4.22	2.65	5.62
Merged-chr9-107566993-2	chr9	107566510	107567510	+	835.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019742)	TTS (NM_019742)	-2153.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	12.01	9.22	20.35	10.8	10.26	25.72	11.62	6.19	26.23
Merged-chr5-112326778-2	chr5	112326263	112327263	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018783, intron 1 of 13)	intron (NM_018783, intron 1 of 13)	394.0	NM_018783	54723.0	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	230.54	225.78	139.67	190.27	180.54	165.58	181.66	191.02	103.05
Merged-chr17-11352980-2	chr17	11352436	11353436	+	835.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 4 of 6)	MLTR25A|LTR|ERVK	512577.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	9.15	4.61	1.85	9.45	9.33	9.65	6.34	2.65	6.25
Merged-chr12-56336114-3	chr12	56335624	56336624	+	835.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145442, intron 6 of 8)	intron (NM_145442, intron 6 of 8)	9770.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	24.03	29.95	35.15	34.41	24.26	45.01	36.97	33.16	31.85
Merged-chr1-143814136-3	chr1	143813612	143814612	+	835.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	36834.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	9.15	6.45	3.7	9.45	4.2	3.22	2.11	2.65	1.25
Merged-chr4-102543123-2	chr4	102542637	102543637	+	835.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-26923.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	9.72	11.52	20.35	12.14	5.13	3.22	10.56	6.63	6.87
Merged-chrX-136270169-2	chrX	136269652	136270652	+	835.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009750)	promoter-TSS (NM_009750)	-101.0	NM_001110233	12070.0	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	4.58	2.3	0.0	8.77	2.33	1.61	1.06	0.44	0.0
Merged-chr1-84582028-3	chr1	84581537	84582537	+	835.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 3 of 12)	intron (NM_152915, intron 3 of 12)	-113802.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	3.43	7.37	7.4	4.72	2.8	1.61	0.0	1.33	2.5
Merged-chr3-8245875-3	chr3	8245407	8246407	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217191.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	14.87	42.39	37.92	78.94	85.84	116.55	30.63	22.11	45.59
Merged-chr1-156471730-3	chr1	156471254	156472254	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	RSINE1|SINE|B4	2574.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	244.84	250.67	172.97	242.22	249.58	199.34	280.95	288.29	157.38
Merged-chr4-7405288-3	chr4	7404814	7405814	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-155374.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	6.29	7.83	5.55	5.4	2.33	3.22	2.11	7.52	3.75
Merged-chr3-105059035-3	chr3	105058544	105059544	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5898.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	8.58	5.99	5.55	9.45	4.2	2.41	4.22	1.33	2.5
Merged-chr4-132946155-3	chr4	132945659	132946659	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23608.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	284.31	203.67	165.57	251.67	221.13	173.62	232.36	246.29	114.29
Merged-chr6-32591552-3	chr6	32591038	32592038	+	835.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3346.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	4.58	4.61	3.7	4.05	1.87	1.61	2.11	1.77	3.75
Merged-chr9-40808279-1	chr9	40807779	40808779	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7006.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	93.82	48.84	38.85	77.59	65.31	47.42	134.14	103.02	81.19
Merged-chr18-38923264-2	chr18	38922755	38923755	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-4556.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	5.72	4.61	1.85	21.59	12.13	16.08	4.22	2.65	4.37
Merged-chr3-27625407-1	chr3	27624907	27625907	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-40412.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	17.16	21.66	9.25	12.82	17.26	20.09	11.62	9.73	13.12
Merged-chr5-3309390-1	chr5	3308890	3309890	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34503.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	1.72	2.3	5.55	11.47	12.6	8.04	3.17	2.21	7.49
Merged-chr8-22873428-1	chr8	22872928	22873928	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	13889.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.72	7.83	5.55	5.4	6.53	13.66	7.39	4.42	1.25
Merged-chr8-33443730-2	chr8	33443244	33444244	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40567.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.57	1.84	0.0	2.7	2.8	4.82	5.28	1.33	1.25
Merged-chr3-108296558-2	chr3	108296062	108297062	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	12498.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	23.45	17.51	20.35	22.27	21.46	11.25	6.34	6.63	9.37
Merged-chr15-97487612-2	chr15	97487134	97488134	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218188.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	21.17	18.89	5.55	16.19	17.73	30.54	13.73	11.94	21.86
Merged-chr4-118428729-3	chr4	118428197	118429197	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039175, intron 1 of 6)	intron (NM_001039175, intron 1 of 6)	604.0	NM_019422	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	111.55	143.76	163.72	119.43	129.69	172.01	176.38	159.62	119.91
Merged-chr13-112137042-2	chr13	112136553	112137553	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-151398.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	26.89	15.21	15.72	33.06	15.86	31.35	35.91	31.39	18.74
Merged-chr10-34127624-2	chr10	34127135	34128135	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175449, exon 1 of 2)	exon (NM_175449, exon 1 of 2)	337.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	219.67	264.03	204.41	255.04	250.05	280.52	188.0	233.46	139.89
Merged-chr13-109440550-2	chr13	109440050	109441050	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	115806.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	8.01	5.53	9.25	17.54	16.33	19.29	7.39	3.98	3.75
Merged-chr12-71294822-2	chr12	71294308	71295308	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15076.0	NM_021532	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	2.86	4.15	3.7	4.72	6.06	6.43	2.11	2.65	3.12
Merged-chr10-74104697-2	chr10	74104198	74105198	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142748, intron 3 of 25)	intron (NM_001142748, intron 3 of 25)	282831.0	NM_001142735	11994.0	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	4.0	6.91	7.4	7.42	9.33	11.25	6.34	10.61	12.49
Merged-chr8-108662947-1	chr8	108662447	108663447	+	835.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.72	7.37	0.0	4.05	4.2	7.23	2.11	3.1	2.5
Merged-chr2-174106802-2	chr2	174106282	174107282	+	835.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3569.0	NM_213733	228961.0	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	26.31	16.59	39.77	0.67	3.27	3.22	19.01	14.15	16.24
Merged-chr6-49031430-3	chr6	49030923	49031923	+	835.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5095.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	4.58	2.76	3.7	4.05	4.2	6.43	12.67	6.19	3.12
Merged-chr10-5080180-5	chr10	5079668	5080668	+	835.473328	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079686, intron 37 of 54)	intron (NM_001079686, intron 37 of 54)	-11105.0	NM_022027	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	16.59	28.57	25.9	12.14	15.86	15.27	16.9	14.59	17.49
Merged-chr17-50130540-3	chr17	50130056	50131056	+	835.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	59941.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	7.44	14.28	16.65	14.84	8.86	14.47	17.96	11.05	6.25
Merged-chr6-31121209-3	chr6	31120712	31121712	+	835.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	L1MA4|LINE|L1	-58119.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	18.88	29.49	24.05	51.95	33.59	42.6	77.1	96.83	40.59
Merged-chr6-38892260-3	chr6	38891748	38892748	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16058.0	NM_001294143	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.29	7.83	3.7	10.8	8.4	11.25	6.34	7.07	11.24
Merged-chrX-151496792-3	chrX	151496289	151497289	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-23883.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	3.43	0.92	0.0	4.05	0.0	0.0	6.34	3.1	2.5
Merged-chr2-114260599-3	chr2	114260120	114261120	+	835.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59188.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	4.0	5.07	1.85	7.42	4.67	1.61	4.22	5.31	0.0
Merged-chr8-119817713-3	chr8	119817239	119818239	+	835.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	(ACCTG)n|Simple_repeat|Simple_repeat	22840.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	17.16	19.35	6.47	26.99	14.0	23.31	28.52	30.95	26.23
Merged-chr7-128399686-3	chr7	128399183	128400183	+	835.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	MTC|LTR|ERVL-MaLR	18489.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	25.74	23.04	32.37	19.57	21.46	31.35	12.67	21.22	19.36
Merged-chr11-49720016-3	chr11	49719528	49720528	+	835.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7306.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	3.43	3.69	0.0	1.35	1.87	1.61	3.17	2.65	0.0
Merged-chr4-3770716-5	chr4	3770178	3771178	+	835.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	55714.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	21.74	25.8	39.77	27.66	20.53	33.76	28.52	14.59	26.23
Merged-chr1-71735735-3	chr1	71735241	71736241	+	835.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82406.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	10.87	7.83	9.25	10.8	7.93	28.94	19.01	9.29	11.24
Merged-chr10-7680205-2	chr10	7679700	7680700	+	835.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033219, exon 1 of 1)	non-coding (NR_033219, exon 1 of 1)	935.0	NM_001358649	18537.0	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	36.61	44.24	54.57	53.3	33.12	57.87	44.36	42.01	30.6
Merged-chr2-5507778-2	chr2	5507272	5508272	+	835.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	128382.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	40.04	55.75	24.97	43.86	43.85	45.01	17.96	29.18	11.87
Merged-chr4-46592263-1	chr4	46591763	46592763	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	9666.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.0	10.6	11.1	14.17	8.4	4.82	7.39	1.77	3.75
Merged-chr12-112722156-1	chr12	112721656	112722656	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024602)	promoter-TSS (NM_001024602)	-18.0	NM_001024602	217882.0	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	3.43	1.84	5.55	6.75	2.8	2.41	5.28	2.65	2.5
Merged-chr5-139470596-3	chr5	139470120	139471120	+	835.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159908)	TTS (NM_001159908)	-10086.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	12.59	12.9	9.25	15.52	6.53	14.47	7.39	14.15	6.25
Merged-chr9-92490061-1	chr9	92489561	92490561	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178711, exon 8 of 9)	exon (NM_178711, exon 8 of 9)	32683.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	2.29	1.84	1.85	6.75	2.33	0.0	1.06	0.44	1.25
Merged-chr5-115313093-1	chr5	115312593	115313593	+	835.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131932, intron 1 of 1)	intron (NR_131932, intron 1 of 1)	11973.0	NR_131932	102639268.0	Mm.319998	NR_131932		Gm13830	-	predicted gene 13830	ncRNA	7.44	7.83	9.25	10.12	6.53	10.45	10.56	5.31	2.5
Merged-chr12-32897666-3	chr12	32897169	32898169	+	835.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56120.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.29	5.99	1.85	5.4	3.27	3.22	1.06	3.98	2.5
Merged-chrX-17520233-3	chrX	17519750	17520750	+	835.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	51757.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	19.45	20.74	8.32	18.22	16.33	9.65	11.62	4.42	3.75
Merged-chr1-62720956-3	chr1	62720495	62721495	+	835.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	17678.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	100.68	133.17	67.52	56.0	66.71	73.95	33.8	44.22	51.84
Merged-chr13-101540111-3	chr13	101539599	101540599	+	835.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142519.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	104.11	55.75	54.57	94.46	66.71	53.05	78.16	104.35	43.09
Merged-chr2-167996542-2	chr2	167996043	167997043	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 4 of 21)	MLTR14|LTR|ERV1	14050.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	5.72	4.61	2.77	11.47	0.47	3.22	8.45	1.77	6.87
Merged-chr19-22930646-2	chr19	22930145	22931145	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035239, intron 21 of 24)	intron (NM_001035239, intron 21 of 24)	180040.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	1.72	2.76	0.0	4.05	1.87	3.22	4.22	4.42	2.5
Merged-chr2-93129442-2	chr2	93128949	93129949	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58099.0	NM_001356536	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	13.73	11.98	0.0	8.1	4.2	8.84	14.79	20.34	17.49
Merged-chr9-70007997-1	chr9	70007497	70008497	+	835.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-4551.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	24.6	57.14	22.2	32.39	32.19	29.74	39.08	25.2	18.74
Merged-chr5-21711651-3	chr5	21711155	21712155	+	835.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10033.0	NM_001359965	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	25.74	29.95	30.52	10.8	14.93	20.9	20.07	20.78	29.35
Merged-chr2-52858661-4	chr2	52858048	52859048	+	835.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	CpG	680.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	104.69	115.66	147.07	133.59	174.47	233.1	114.07	131.77	91.81
Merged-chr4-32559997-2	chr4	32559498	32560498	+	835.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_026843, exon 5 of 5)	non-coding (NR_026843, exon 5 of 5)	11664.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	77.8	76.95	54.57	82.99	71.84	81.18	86.61	80.47	58.08
Merged-chr1-139037310-3	chr1	139036821	139037821	+	835.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166501, intron 3 of 21)	intron (NM_001166501, intron 3 of 21)	59664.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	5.15	8.29	1.85	10.12	4.2	6.43	6.34	2.65	1.25
Merged-chr3-88465258-3	chr3	88464735	88465735	+	835.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4053.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	8.01	6.91	10.17	8.77	6.06	11.25	8.45	3.1	10.62
Merged-chr3-28146155-3	chr3	28145683	28146683	+	835.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-117031.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.43	5.99	0.0	10.8	6.06	8.04	6.34	4.42	8.74
Merged-chr6-124271273-3	chr6	124270778	124271778	+	835.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33373.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	30.89	38.25	37.0	34.41	25.19	32.96	30.63	29.18	29.98
Merged-chr12-35287760-3	chr12	35287264	35288264	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-92867.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	12.59	6.45	3.7	12.14	11.2	8.84	14.79	7.07	14.36
Merged-chr14-76467108-3	chr14	76466617	76467617	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-21319.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.72	2.3	3.7	3.37	3.73	4.82	0.0	6.19	5.0
Merged-chr2-91944386-3	chr2	91943896	91944896	+	835.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105965)	TTS (NR_105965)	534.0	NR_105965	102465604.0		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	15.45	8.29	14.8	16.19	8.4	8.04	10.56	5.31	6.25
Merged-chr7-27454926-3	chr7	27454378	27455378	+	835.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290525, intron 1 of 4)	L1MB8|LINE|L1	2460.0	NM_001290525	233016.0	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	36.61	35.02	21.27	20.92	34.52	27.33	74.99	66.33	39.97
Merged-chrX-68692020-3	chrX	68691514	68692514	+	835.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008031, intron 3 of 16)	intron (NM_008031, intron 3 of 16)	13473.0	NM_001290424	14265.0	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	4.0	6.45	3.7	8.1	4.67	4.82	2.11	5.75	6.25
Merged-chr9-120934145-3	chr9	120933626	120934626	+	835.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	CpG	548.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	112.12	95.38	113.77	111.33	92.37	97.26	120.41	68.98	61.83
Merged-chr7-83062228-3	chr7	83061707	83062707	+	835.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86263.0	NM_177895	330578.0	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	10.3	11.98	7.4	6.07	8.86	27.33	8.45	9.29	5.0
Merged-chr10-66930171-2	chr10	66929659	66930659	+	835.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-9775.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	78.37	69.58	22.2	97.83	68.11	31.35	96.11	77.82	66.2
Merged-chr14-74855593-3	chr14	74855057	74856057	+	835.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 2 of 19)	RSINE1|SINE|B4	92320.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	12.01	8.75	8.32	15.52	3.73	16.08	11.62	7.07	9.99
Merged-chr17-6154623-1	chr17	6154123	6155123	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	16475.0	NM_054040	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	1.14	1.84	3.7	8.77	4.67	6.43	1.06	5.75	4.37
Merged-chr5-25086415-1	chr5	25085915	25086915	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	MIRb|SINE|MIR	14227.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.29	2.3	14.8	14.84	9.33	8.04	4.22	0.88	0.0
Merged-chr10-12729203-1	chr10	12728703	12729703	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 13 of 73)	intron (NM_011682, intron 13 of 73)	132532.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.44	5.99	3.7	10.12	8.86	6.43	8.45	11.5	7.49
Merged-chr5-97002499-1	chr5	97001999	97002999	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	4810.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	12.01	17.97	9.25	21.59	16.79	11.25	19.01	15.92	14.99
Merged-chr14-74774396-1	chr14	74773896	74774896	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	42099.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	16.02	17.51	25.9	27.66	31.72	18.49	7.39	19.9	20.61
Merged-chr7-83615968-1	chr7	83615468	83616468	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177695, exon 18 of 23)	exon (NM_177695, exon 18 of 23)	-16049.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	40.04	35.02	33.3	37.78	34.52	28.13	40.14	34.93	31.23
Merged-chr12-108931321-1	chr12	108930821	108931821	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37049.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	5.15	2.3	0.92	10.8	14.0	16.88	7.39	3.54	8.12
Merged-chr5-137859049-2	chr5	137858536	137859536	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-987.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	34.9	35.02	33.3	33.06	26.12	59.48	63.37	59.69	36.85
Merged-chr3-51654501-1	chr3	51654001	51655001	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6678.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.58	3.23	2.77	2.7	3.73	6.43	2.11	1.77	2.5
Merged-chr14-20694494-1	chr14	20693994	20694994	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028428)	promoter-TSS (NM_028428)	-474.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	40.62	49.3	58.27	55.33	49.45	65.11	31.69	54.39	58.08
Merged-chr15-30605916-1	chr15	30605416	30606416	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-433210.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.43	8.29	4.62	3.37	12.13	4.02	12.67	4.42	6.87
Merged-chr11-34074706-3	chr11	34074176	34075176	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	23878.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	26.31	33.64	29.6	35.09	20.53	37.78	28.52	28.74	9.99
Merged-chr12-100319887-1	chr12	100319387	100320387	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 19 of 19)	intron (NM_001033213, intron 19 of 19)	43278.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	4.58	13.36	24.05	20.24	14.46	24.92	15.84	9.73	16.24
Merged-chr7-45509813-1	chr7	45509313	45510313	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163662, exon 2 of 13)	exon (NM_001163662, exon 2 of 13)	595.0	NM_008749	18220.0	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	71.51	74.65	61.05	69.5	56.45	72.34	78.16	87.11	46.84
Merged-chr6-116681655-3	chr6	116681145	116682145	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7809.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	51.48	65.43	74.0	56.68	47.12	45.82	79.21	68.09	43.72
Merged-chr1-153500656-1	chr1	153500156	153501156	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12996.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	34.32	41.47	37.92	31.71	42.92	36.17	16.9	18.57	22.48
Merged-chr10-53519122-1	chr10	53518622	53519622	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037973)	promoter-TSS (NR_037973)	-133.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	8.01	5.53	5.55	14.17	7.46	11.25	6.34	0.88	5.0
Merged-chr7-25248463-3	chr7	25247913	25248913	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010155, intron 1 of 3)	intron (NM_010155, intron 1 of 3)	2345.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	26.31	18.43	7.4	23.62	14.0	24.92	28.52	23.88	26.23
Merged-chr9-55024049-3	chr9	55023556	55024556	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145129, intron 3 of 5)	intron (NM_145129, intron 3 of 5)	2503.0	NM_145129	110834.0	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	4.0	0.46	1.85	6.07	3.27	1.61	1.06	3.1	1.25
Merged-chr8-11336684-2	chr8	11336202	11337202	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-23876.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	5.15	6.91	9.25	17.54	12.6	8.84	10.56	7.07	10.62
Merged-chr15-100638033-1	chr15	100637533	100638533	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	40.62	41.47	32.37	43.86	36.85	52.25	48.58	44.22	55.58
Merged-chr9-65359334-1	chr9	65358834	65359834	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016688, exon 5 of 5)	3' UTR (NM_016688, exon 5 of 5)	-1726.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	37.76	52.07	42.55	54.65	37.32	77.16	47.53	49.96	25.61
Merged-chr12-111462389-1	chr12	111461889	111462889	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	19728.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	4.0	2.3	0.0	1.35	1.4	3.22	4.22	4.86	0.0
Merged-chr3-30847704-3	chr3	30847205	30848205	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8245.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	13.73	11.52	29.6	6.07	4.2	8.04	24.29	28.3	6.25
Merged-chr17-27960651-1	chr17	27960151	27961151	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	51345.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	70.93	85.71	71.22	84.34	61.11	97.26	54.92	58.81	53.08
Merged-chr1-84443917-1	chr1	84443417	84444417	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-159272.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	1.72	5.07	9.25	4.05	5.13	5.63	3.17	1.33	4.37
Merged-chr2-30708004-3	chr2	30707501	30708501	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-13209.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	90.96	102.75	73.07	94.46	100.3	137.45	65.48	56.16	81.81
Merged-chr5-52386156-2	chr5	52385639	52386639	+	835.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 10 of 11)	intron (NM_001256059, intron 10 of 11)	22335.0	NM_011435	20657.0	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	4.0	0.46	4.62	1.35	0.47	0.0	4.22	4.42	2.5
Merged-chr12-70708175-1	chr12	70707675	70708675	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-117339.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	7.44	8.29	12.95	16.87	11.66	3.22	4.22	3.54	2.5
Merged-chr6-83087372-1	chr6	83086872	83087872	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010692, intron 1 of 1)	intron (NM_010692, intron 1 of 1)	1007.0	NM_010692	16815.0	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox 2	protein-coding	24.6	13.82	5.55	26.31	18.66	27.33	21.12	25.2	11.87
Merged-chr5-35757123-1	chr5	35756623	35757623	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177696)	promoter-TSS (NM_001177696)	-757.0	NM_001177697	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	29.17	39.17	52.72	31.04	34.06	32.96	20.07	11.5	14.36
Merged-chr12-3776177-1	chr12	3775677	3776677	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-30803.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	13.16	10.14	12.95	11.47	10.26	14.47	11.62	3.1	5.0
Merged-chr17-29389372-1	chr17	29388872	29389872	+	835.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28458.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.86	5.53	3.7	6.07	3.27	3.22	8.45	5.75	3.75
Merged-chr4-19712449-1	chr4	19711949	19712949	+	835.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-3445.0	NR_074090	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	6.86	7.83	5.55	10.8	10.73	12.06	8.45	3.98	2.5
Merged-chr17-80734883-3	chr17	80734374	80735374	+	834.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6849.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	1.14	1.38	5.55	6.07	2.33	6.43	6.34	2.21	1.25
Merged-chr14-104474660-2	chr14	104474171	104475171	+	834.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6672.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	4.0	5.53	1.85	4.72	2.8	10.45	2.11	3.54	0.0
Merged-chr14-10228208-3	chr14	10227723	10228723	+	834.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	225235.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	8.58	8.29	7.4	7.42	8.86	4.82	11.62	2.21	7.49
Merged-chr10-67036330-3	chr10	67035829	67036829	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178606, intron 3 of 7)	intron (NM_178606, intron 3 of 7)	31254.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	28.03	27.65	13.87	26.31	21.46	8.04	21.12	26.97	7.49
Merged-chr18-5832790-3	chr18	5832279	5833279	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240132.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	8.01	7.83	9.25	5.4	8.86	18.49	8.45	4.42	5.62
Merged-chr8-11015774-3	chr8	11015258	11016258	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-7328.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	40.04	25.8	11.1	61.4	61.58	40.99	16.9	19.46	8.74
Merged-chr9-69289833-3	chr9	69289331	69290331	+	834.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-10.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	6.86	5.53	0.0	18.89	17.73	5.63	2.11	3.54	7.49
Merged-chr10-8769533-3	chr10	8769075	8770075	+	834.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	116495.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	34.9	41.93	35.15	87.04	43.85	52.25	41.19	30.95	35.6
Merged-chr6-31457155-2	chr6	31456648	31457648	+	834.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	MTEb-int|LTR|ERVL-MaLR	58320.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	14.87	17.51	20.35	14.84	20.99	37.78	22.18	13.27	16.24
Merged-chr13-67278516-2	chr13	67278025	67279025	+	834.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033540)	promoter-TSS (NR_033540)	-69.0	NR_033540	100038627.0	Mm.387089	NR_033540	ENSMUSG00000114442	F630042J09Rik	-	RIKEN cDNA F630042J09 gene	ncRNA	20.02	4.61	5.55	13.49	5.13	8.04	3.17	2.21	1.87
Merged-chr3-37640396-3	chr3	37639896	37640896	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305441, intron 1 of 1)	CpG	449.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	108.12	82.48	54.57	22.94	19.13	10.45	6.34	9.29	5.0
Merged-chr9-108518228-3	chr9	108517726	108518726	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175143, intron 1 of 9)	intron (NM_175143, intron 1 of 9)	1139.0	NM_175143	69232.0	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik|b2b2404Clo	glutamine-rich 1	protein-coding	246.56	276.47	180.37	214.56	243.05	221.04	218.63	271.05	155.51
Merged-chr12-70107108-3	chr12	70106594	70107594	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	MIRb|SINE|MIR	-4240.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.58	2.3	5.55	7.42	3.73	7.23	4.22	7.52	1.25
Merged-chr11-70038286-3	chr11	70037771	70038771	+	834.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007864, intron 8 of 19)	intron (NM_007864, intron 8 of 19)	-15853.0	NM_001291131	11889.0	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	72.08	54.83	63.82	43.86	32.66	38.58	62.31	88.43	36.22
Merged-chr1-95381221-3	chr1	95380727	95381727	+	834.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON29|DNA|PiggyBac?	67599.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	18.31	14.75	21.27	20.92	16.79	33.76	27.46	31.39	18.11
Merged-chr19-34213067-2	chr19	34212569	34213569	+	834.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	-4439.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	14.3	11.06	26.82	24.29	12.13	20.09	2.11	8.4	3.75
Merged-chr10-4612027-2	chr10	4611543	4612543	+	834.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	54.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	48.05	83.4	63.82	71.52	67.18	57.07	58.09	49.96	19.98
Merged-chrX-101201634-3	chrX	101201124	101202124	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	Lx8|LINE|L1	20939.0	NM_001110311	55988.0	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	2.86	5.53	0.0	3.37	7.93	6.43	5.28	3.54	5.0
Merged-chr16-49999871-3	chr16	49999358	50000358	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19398.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	12.59	5.07	3.7	19.57	9.8	6.43	12.67	8.84	7.49
Merged-chr17-26012315-3	chr17	26011839	26012839	+	834.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9521.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	2.86	0.92	9.25	4.72	2.33	1.61	0.0	1.77	0.0
Merged-chr11-106961493-1	chr11	106960993	106961993	+	834.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38032.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	10.3	30.87	17.57	35.76	30.79	54.66	26.4	17.69	34.97
Merged-chr3-36473499-3	chr3	36473012	36474012	+	834.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009673, intron 2 of 12)	intron (NM_009673, intron 2 of 12)	2012.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	29.75	42.85	29.6	16.87	10.73	32.96	17.96	13.27	25.61
Merged-chr8-105518875-5	chr8	105518260	105519260	+	834.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008289)	promoter-TSS (NM_008289)	14.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	12.01	5.53	5.55	13.49	4.67	5.63	5.28	5.31	3.75
Merged-chr10-51553575-3	chr10	51553105	51554105	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36855.0	NM_029894	77296.0	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	11.44	3.23	7.4	14.84	7.93	8.84	11.62	4.42	5.0
Merged-chr11-106666854-3	chr11	106666307	106667307	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	48474.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	36.04	23.96	18.5	31.71	14.0	24.92	21.12	8.4	20.61
Merged-chr13-103893234-3	chr13	103892735	103893735	+	834.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	27351.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	18.88	10.6	8.32	12.14	10.26	7.23	8.45	11.5	9.37
Merged-chr11-117344564-2	chr11	117344061	117345061	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	12248.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	12.01	6.45	24.97	28.34	13.06	8.04	9.51	5.75	5.0
Merged-chr17-35869720-4	chr17	35869237	35870237	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146710, intron 2 of 3)	intron (NM_001146710, intron 2 of 3)	3122.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	80.09	59.9	81.4	49.93	34.99	90.83	70.76	73.4	68.07
Merged-chr13-17782009-3	chr13	17781505	17782505	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	L1_Mus3|LINE|L1	23092.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	4.58	8.75	14.8	11.47	3.73	6.43	15.84	11.94	8.74
Merged-chr15-27856384-4	chr15	27855913	27856913	+	834.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	169435.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	6.29	10.14	1.85	21.59	8.4	4.82	11.62	4.86	1.25
Merged-chr18-5162678-2	chr18	5162177	5163177	+	834.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_153824)	TTS (NR_153824)	3054.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	18.88	13.82	21.27	28.34	28.46	30.54	21.12	9.29	5.0
Merged-chr13-62929380-2	chr13	62928890	62929890	+	834.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35503.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.58	2.76	0.0	6.75	3.27	1.61	12.67	16.8	11.24
Merged-chr18-80311132-3	chr18	80310619	80311619	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	53135.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	14.3	23.5	34.22	20.92	16.33	44.21	25.35	36.7	18.11
Merged-chr11-29718698-3	chr11	29718157	29719157	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024226)	promoter-TSS (NM_024226)	94.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	89.81	106.44	70.3	39.13	64.38	32.96	120.41	179.08	52.46
Merged-chr4-138216373-3	chr4	138215870	138216870	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122896)	promoter-TSS (NM_001122896)	-242.0	NM_001122896	15441.0	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	66.93	70.04	65.67	84.34	47.12	63.5	92.94	86.22	56.83
Merged-chr15-63704891-3	chr15	63704387	63705387	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103852.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	8.01	7.37	1.85	6.07	7.93	12.06	7.39	3.54	5.0
Merged-chr9-114592471-3	chr9	114591963	114592963	+	834.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153585, intron 18 of 19)	intron (NM_153585, intron 18 of 19)	-28094.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	2.86	5.99	1.85	3.37	4.2	1.61	9.51	2.65	6.25
Merged-chr11-114929842-3	chr11	114929349	114930349	+	834.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	4537.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	110.41	117.5	83.25	102.56	76.51	143.88	74.99	69.42	66.2
Merged-chr10-30380704-1	chr10	30380204	30381204	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180164.0	NM_001109747	66311.0	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	2.86	4.15	3.7	8.1	1.4	3.22	5.28	2.21	8.12
Merged-chr17-84116395-1	chr17	84115895	84116895	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37735.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	68.65	35.02	41.62	64.77	39.19	39.39	21.12	14.15	16.86
Merged-chr16-36674584-3	chr16	36674074	36675074	+	834.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8497.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	26.89	27.19	29.6	26.99	26.59	46.62	33.8	27.41	21.86
Merged-chr9-77748216-1	chr9	77747716	77748716	+	834.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-6319.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	18.88	13.36	25.9	8.77	7.0	15.27	6.34	7.07	8.74
Merged-chr8-8459102-2	chr8	8458603	8459603	+	834.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	201670.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.86	1.38	0.0	2.02	1.87	0.0	5.28	4.86	0.0
Merged-chr10-95941945-3	chr10	95941441	95942441	+	834.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	1278.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	29.17	26.26	4.62	35.76	36.39	32.96	45.42	34.93	9.99
Merged-chr11-70805494-5	chr11	70804972	70805972	+	834.65332	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 1 of 4)	intron (NM_001045526, intron 1 of 4)	7089.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	248.27	208.27	211.81	156.53	100.77	181.66	212.29	211.8	167.37
Merged-chr2-102452232-2	chr2	102451747	102452747	+	834.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010218)	promoter-TSS (NM_010218)	-455.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	12.01	1.38	7.4	8.77	1.87	3.22	11.62	4.42	5.62
Merged-chr16-4594620-3	chr16	4594099	4595099	+	834.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-114.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	14.3	4.15	5.55	10.8	5.6	4.02	7.39	2.21	6.87
Merged-chr11-79307208-3	chr11	79306711	79307711	+	834.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32681.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	37.18	29.03	24.05	36.43	30.32	46.62	36.97	29.63	25.61
Merged-chr19-33109286-3	chr19	33108800	33109800	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-47812.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	5.15	5.99	4.62	20.24	3.27	6.43	11.62	13.71	1.25
Merged-chr18-23912204-3	chr18	23911753	23912753	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42435.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	8.01	11.06	12.95	23.62	16.33	27.33	31.69	22.11	25.61
Merged-chr10-127619373-3	chr10	127618877	127619877	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	1771.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	96.11	98.15	80.47	117.4	103.1	188.09	142.59	150.78	101.17
Merged-chr19-41016075-3	chr19	41015580	41016580	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4402.0	NR_155302	100861913.0	Mm.35204	NR_155302		C330026H20Rik	-	RIKEN cDNA C330026H20 gene	ncRNA	33.75	21.2	5.55	37.78	23.79	14.47	5.28	2.65	3.75
Merged-chr4-45297158-3	chr4	45296642	45297642	+	834.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027266)	promoter-TSS (NM_027266)	-26.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	8.01	13.82	24.97	10.8	14.46	30.54	16.9	8.4	13.74
Merged-chr11-113173014-1	chr11	113172514	113173514	+	834.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	28824.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.14	0.46	1.85	0.67	0.0	0.0	73.93	73.4	47.46
Merged-chr19-41597291-1	chr19	41596791	41597791	+	834.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8640.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.57	2.3	9.25	4.05	2.33	7.23	6.34	4.42	9.37
Merged-chr14-62218259-3	chr14	62217754	62218754	+	834.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74725.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	12.01	2.76	3.7	16.19	9.33	12.86	3.17	7.52	5.62
Merged-chr18-38420301-3	chr18	38419792	38420792	+	834.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	1385.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	111.55	129.48	49.02	127.52	105.43	94.85	133.08	141.49	89.93
Merged-chr16-57526702-1	chr16	57526202	57527202	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	ID_B1|SINE|B4	-22540.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	26.31	21.2	35.15	28.34	25.66	28.94	11.62	15.92	19.98
Merged-chr17-87449048-1	chr17	87448548	87449548	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2113.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	9.72	4.61	3.7	4.72	4.2	3.22	7.39	4.86	1.25
Merged-chr6-50295359-1	chr6	50294859	50295859	+	834.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347213, exon 24 of 24)	3' UTR (NM_001347213, exon 24 of 24)	-33590.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.58	4.15	1.85	4.72	5.6	6.43	8.45	6.63	6.87
Merged-chr12-52318654-2	chr12	52318137	52319137	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	161972.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	46.34	44.7	35.15	16.19	18.19	10.45	82.38	69.86	18.11
Merged-chr15-6625736-3	chr15	6625213	6626213	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155272, intron 3 of 6)	intron (NR_155272, intron 3 of 6)	28590.0	NR_155272	102632231.0	Mm.444780	NR_155272		LOC102632231	-	uncharacterized LOC102632231	ncRNA	34.9	82.94	41.62	74.89	47.12	60.28	90.83	78.26	62.45
Merged-chr1-127222389-3	chr1	127221878	127222878	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	17392.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	31.46	27.19	21.27	49.93	40.59	49.83	51.75	46.87	27.48
Merged-chr19-45017508-3	chr19	45017029	45018029	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001130526)	promoter-TSS (NM_001130526)	-606.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	95.53	28.11	28.67	120.77	38.72	49.03	54.92	16.36	6.87
Merged-chr16-22511460-3	chr16	22510957	22511957	+	834.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-23.0	NR_130988	78082.0	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	16.02	19.35	7.4	10.12	12.6	12.86	16.9	21.22	20.61
Merged-chr17-35865909-3	chr17	35865380	35866380	+	834.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175242)	promoter-TSS (NM_175242)	-248.0	NM_001146710	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	58.92	53.91	102.67	72.87	40.59	113.33	78.16	64.56	84.31
Merged-chr12-111036373-3	chr12	111035867	111036867	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3431.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	16.59	19.81	17.57	20.92	14.93	24.92	29.57	23.88	20.61
Merged-chr2-128710986-3	chr2	128710510	128711510	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	12095.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	62.35	78.33	66.6	93.79	93.77	98.06	66.54	94.62	43.72
Merged-chr12-104233381-3	chr12	104232888	104233888	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	RMER16|LTR|ERVK	-2759.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	20.59	16.13	35.15	13.49	5.6	24.92	31.69	30.95	17.49
Merged-chr9-61954920-3	chr9	61954419	61955419	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028748, exon 8 of 8)	3' UTR (NM_028748, exon 8 of 8)	-8120.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	37.76	23.96	20.35	22.27	33.59	38.58	45.42	34.93	22.48
Merged-chr7-4940364-3	chr7	4939865	4940865	+	834.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 12 of 13)	intron (NM_173008, intron 12 of 13)	14521.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	1.14	4.15	3.7	2.02	1.4	1.61	6.34	2.21	2.5
Merged-chr3-97617337-3	chr3	97616844	97617844	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-7154.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	14.3	5.99	9.25	8.77	7.0	1.61	6.34	11.05	3.75
Merged-chr3-97681985-3	chr3	97681490	97682490	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8572.0	NR_106084	102466229.0		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	22.88	37.32	20.35	20.24	25.19	27.33	15.84	19.9	29.35
Merged-chr11-55446830-3	chr11	55446364	55447364	+	834.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	14344.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	1.14	1.38	3.7	6.07	4.2	2.41	2.11	3.1	5.0
Merged-chr6-131281641-1	chr6	131281141	131282141	+	834.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	11603.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	12.59	15.21	23.12	11.47	12.13	24.92	9.51	18.13	26.85
Merged-chrX-61677986-3	chrX	61677500	61678500	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31616.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	13.73	8.75	9.25	18.89	14.93	9.65	38.02	24.32	12.49
Merged-chr2-59055941-3	chr2	59055447	59056447	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	L1MA9|LINE|L1	104736.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	18.88	8.75	14.8	9.45	12.13	7.23	20.07	12.82	5.62
Merged-chr11-32221823-9	chr11	32221262	32222262	+	834.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010117, intron 1 of 17)	CpG	531.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	20.59	21.66	18.5	27.66	17.26	18.49	14.79	3.54	16.24
Merged-chr13-34096207-3	chr13	34095712	34096712	+	834.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046184, intron 2 of 4)	intron (NR_046184, intron 2 of 4)	17060.0	NR_046184	432745.0	Mm.159104	NR_046184	ENSMUSG00000113591	4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	8.01	6.91	3.7	8.77	6.53	3.22	10.56	7.96	3.75
Merged-chr16-45390001-3	chr16	45389528	45390528	+	834.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358443, intron 4 of 4)	intron (NM_001358443, intron 4 of 4)	19025.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	5.72	3.23	0.0	4.72	4.2	1.61	9.51	4.42	5.0
Merged-chr1-20890583-2	chr1	20890097	20891097	+	834.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040492)	promoter-TSS (NR_040492)	49.0	NM_028829	74229.0	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	3.43	3.23	11.1	2.02	2.33	6.43	6.34	1.33	2.5
Merged-chr4-145019332-2	chr4	145018844	145019844	+	834.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	126207.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	24.6	35.02	28.67	53.98	72.31	45.01	19.01	26.97	17.49
Merged-chr16-50364741-1	chr16	50364241	50365241	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	67648.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	16.02	31.33	28.67	17.54	22.39	26.53	19.01	25.65	6.87
Merged-chr15-81848491-3	chr15	81847996	81848996	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020507, exon 2 of 2)	3' UTR (NM_020507, exon 2 of 2)	9830.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	9.72	9.22	7.4	14.84	15.86	18.49	20.07	15.03	13.74
Merged-chr15-58260762-1	chr15	58260262	58261262	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45870.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	50.91	44.24	23.12	84.34	48.52	36.17	25.35	31.39	14.99
Merged-chr2-36235101-3	chr2	36234592	36235592	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 2 of 10)	intron (NM_008969, intron 2 of 10)	4666.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	60.07	66.35	92.5	99.86	66.24	69.13	128.85	99.05	51.84
Merged-chr10-84209688-3	chr10	84209199	84210199	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	-109002.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.72	5.53	9.25	8.77	7.0	6.43	4.22	2.65	2.5
Merged-chr2-5382610-3	chr2	5382111	5383111	+	834.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	3221.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	6.29	9.68	11.1	22.94	8.86	16.88	14.79	6.63	13.74
Merged-chr13-109437498-1	chr13	109436998	109437998	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	112754.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	7.44	2.76	0.0	3.37	2.8	5.63	5.28	3.1	5.0
Merged-chr1-57862107-1	chr1	57861607	57862607	+	834.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	16536.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	2.86	3.23	3.7	7.42	5.13	2.41	0.0	0.88	0.0
Merged-chr17-34335365-3	chr17	34334866	34335866	+	834.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9279.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	6.86	6.91	5.55	3.37	1.4	4.02	6.34	8.84	9.37
Merged-chr10-117952303-3	chr10	117951800	117952800	+	834.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26841.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	58.35	38.71	20.35	74.89	55.98	49.83	74.99	68.54	41.22
Merged-chr16-95707266-4	chr16	95706723	95707723	+	834.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 2 of 9)	intron (NM_011809, intron 2 of 9)	4816.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	67.5	37.78	28.67	58.03	14.93	49.03	30.63	21.22	35.6
Merged-chr3-60589593-3	chr3	60589093	60590093	+	834.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	88414.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	29.75	25.8	32.37	26.31	18.19	23.31	20.07	33.6	26.23
Merged-chr9-40787531-2	chr9	40787022	40788022	+	834.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-13751.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	25.17	19.81	19.42	27.66	14.46	7.23	9.51	16.8	18.11
Merged-chr14-16575482-2	chr14	16574956	16575956	+	834.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011243)	promoter-TSS (NM_011243)	20.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	14.3	8.75	6.47	1.35	1.87	0.0	2.11	0.0	3.12
Merged-chr14-73142048-3	chr14	73141549	73142549	+	834.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-461.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	83.52	107.36	81.4	82.99	98.43	86.01	119.35	110.1	55.58
Merged-chr8-83201146-3	chr8	83200648	83201648	+	834.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	(TTTTTA)n|Simple_repeat|Simple_repeat	35796.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	80.66	94.92	127.64	45.88	60.65	49.03	196.45	176.42	73.07
Merged-chr1-185205248-3	chr1	185204747	185205747	+	834.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	1079.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	34.9	36.4	14.8	40.48	28.92	36.97	38.02	21.22	13.12
Merged-chr17-25792348-3	chr17	25791844	25792844	+	834.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285982)	promoter-TSS (NM_001285982)	43.0	NM_001285982	214917.0	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	22.88	35.94	33.3	27.66	31.72	57.87	48.58	36.26	39.97
Merged-chr2-75706581-3	chr2	75706097	75707097	+	834.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	45.76	51.15	51.8	66.8	48.98	44.21	76.05	88.88	68.07
Merged-chr2-11280156-5	chr2	11279663	11280663	+	834.195251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 14 of 17)	intron (NM_008859, intron 14 of 17)	-59326.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	21.17	17.05	13.87	31.04	26.59	21.7	29.57	26.09	14.36
Merged-chr18-85698181-3	chr18	85697699	85698699	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-696753.0	NM_001360910	246317.0	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.0	0.92	0.0	1.35	0.47	3.22	0.0	0.88	2.5
Merged-chr15-25563896-3	chr15	25563392	25564392	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58658.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	204.22	182.01	97.12	1.35	6.06	6.43	4.22	3.54	1.25
Merged-chr14-30624489-3	chr14	30624009	30625009	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	1699.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	68.07	54.37	49.02	58.03	47.12	64.3	80.27	72.52	30.6
Merged-chr2-17065332-3	chr2	17064820	17065820	+	834.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51594.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	5.72	12.44	9.25	9.45	10.26	6.43	3.17	5.31	6.87
Merged-chr7-49132957-2	chr7	49132454	49133454	+	834.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	intron (NR_154465, intron 3 of 3)	29204.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	1.14	2.76	1.85	4.05	1.87	1.61	0.0	0.44	1.87
Merged-chr3-65533174-3	chr3	65532659	65533659	+	834.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-3745.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	24.6	21.2	7.4	18.89	15.39	19.29	21.12	31.39	16.86
Merged-chr2-166262000-3	chr2	166261484	166262484	+	834.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11924.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	28.03	9.22	12.95	33.74	7.93	19.29	9.51	8.84	5.62
Merged-chr8-11219450-2	chr8	11218941	11219941	+	834.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 33 of 51)	intron (NM_009931, intron 33 of 51)	-93364.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	10.3	7.37	0.92	17.54	14.93	12.86	3.17	1.33	11.24
Merged-chr5-86942906-2	chr5	86942417	86943417	+	834.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-16414.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	7.44	5.07	6.47	4.72	7.93	22.51	11.62	3.54	14.99
Merged-chr6-47631747-3	chr6	47631245	47632245	+	834.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	23349.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	37.76	37.78	28.67	45.21	34.99	33.76	29.57	25.2	22.48
Merged-chr15-96757985-3	chr15	96757491	96758491	+	834.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58263.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	17.73	11.98	9.25	29.69	26.12	16.08	19.01	7.52	13.12
Merged-chr2-32084805-3	chr2	32084297	32085297	+	834.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151493)	promoter-TSS (NR_151493)	-128.0	NR_151493	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	33.75	23.96	31.45	27.66	29.86	32.15	31.69	29.18	24.36
Merged-chr15-81097613-2	chr15	81097113	81098113	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	7434.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.58	14.28	5.55	12.14	11.66	5.63	13.73	6.19	11.24
Merged-chr2-34976635-3	chr2	34976154	34977154	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14882.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	26.31	21.66	22.2	29.01	24.72	33.76	19.01	16.8	19.36
Merged-chr13-95801624-1	chr13	95801124	95802124	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	90298.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.72	5.07	11.1	12.14	6.53	4.82	4.22	3.54	3.12
Merged-chr10-83640084-1	chr10	83639584	83640584	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145220, intron 2 of 20)	intron (NM_145220, intron 2 of 20)	8580.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	13.73	18.89	12.95	18.89	15.39	4.82	6.34	6.19	5.0
Merged-chr15-50697318-2	chr15	50696823	50697823	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	191726.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	54.35	38.25	24.97	70.85	38.72	27.33	30.63	26.53	11.24
Merged-chr10-118038542-2	chr10	118038042	118039042	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103245.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	21.74	13.36	22.2	37.11	18.66	21.7	0.0	3.54	5.0
Merged-chr5-95881102-2	chr5	95880605	95881605	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75834.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	4.58	4.61	0.0	2.7	1.4	4.02	1.06	0.44	0.0
Merged-chr2-126483506-1	chr2	126483006	126484006	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 2 of 27)	intron (NM_001359975, intron 2 of 27)	8047.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	22.31	31.79	20.35	16.87	22.39	16.88	16.9	22.55	14.99
Merged-chr1-57849315-1	chr1	57848815	57849815	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	MER5A|DNA|hAT-Charlie	3744.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	9.15	4.61	7.4	23.62	15.39	9.65	11.62	4.86	6.25
Merged-chr4-137857348-2	chr4	137856866	137857866	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4871.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	9.72	5.07	0.0	6.07	3.73	1.61	6.34	0.44	4.37
Merged-chr5-31881741-1	chr5	31881241	31882241	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	183691.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	59.49	75.11	87.87	71.52	46.18	57.87	41.19	55.71	60.58
Merged-chr16-18248090-1	chr16	18247590	18248590	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080999)	promoter-TSS (NM_001080999)	604.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	101.83	94.0	102.67	76.24	102.17	98.87	92.94	110.54	69.32
Merged-chr8-71612572-2	chr8	71612117	71613117	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 2 of 11)	intron (NM_146211, intron 2 of 11)	1593.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	140.15	151.6	91.57	178.8	132.49	136.64	235.53	229.48	91.18
Merged-chr9-35175641-1	chr9	35175141	35176141	+	834.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 1 of 5)	intron (NM_027030, intron 1 of 5)	346.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	93.24	96.3	80.47	118.08	98.9	118.16	104.56	107.0	79.94
Merged-chr3-88832580-2	chr3	88832093	88833093	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015498)	promoter-TSS (NR_015498)	-106.0	NR_015498	319830.0	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	7.44	1.38	1.85	0.0	0.0	0.0	8.45	2.65	6.25
Merged-chr16-11000598-1	chr16	11000098	11001098	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7477.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	222.53	171.87	197.94	191.62	145.55	164.78	219.69	210.91	127.4
Merged-chrX-20928654-1	chrX	20928154	20929154	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008823, exon 4 of 9)	exon (NM_008823, exon 4 of 9)	2901.0	NM_008823	18636.0	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	24.03	33.18	45.32	31.71	14.0	36.97	66.54	35.82	34.97
Merged-chr8-75218135-3	chr8	75217638	75218638	+	834.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	4194.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	1.14	3.23	3.7	2.7	1.4	10.45	5.28	5.75	0.0
Merged-chr5-143065367-1	chr5	143064867	143065867	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	47653.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	26.89	37.32	47.17	32.39	17.26	50.64	27.46	35.82	40.59
Merged-chr9-70791652-1	chr9	70791152	70792152	+	834.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	112670.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.0	6.91	3.7	8.1	3.27	6.43	5.28	9.73	5.0
Merged-chr18-74974217-3	chr18	74973724	74974724	+	833.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110446, intron 5 of 6)	ID_B1|SINE|B4	7323.0	NR_110446	71545.0	Mm.488094	NR_110446		9030625G05Rik	-	RIKEN cDNA 9030625G05 gene	ncRNA	13.16	10.6	12.02	16.87	7.46	16.08	10.56	7.52	14.99
Merged-chr16-31944209-3	chr16	31943732	31944732	+	833.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172822, intron 2 of 2)	intron (NM_172822, intron 2 of 2)	4289.0	NR_027897	106264.0	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	19.45	7.83	14.8	10.12	8.4	4.82	10.56	7.52	9.99
Merged-chr18-75895898-2	chr18	75895405	75896405	+	833.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 1 of 4)	intron (NM_145356, intron 1 of 4)	75727.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.57	1.84	3.7	9.45	4.2	4.02	10.56	6.19	6.25
Merged-chr10-78156895-3	chr10	78156392	78157392	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	12876.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	28.6	16.59	15.72	14.84	10.26	16.08	23.24	19.46	16.86
Merged-chr1-105986557-3	chr1	105986035	105987035	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	3747.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	57.21	43.31	18.5	61.4	40.12	34.56	88.72	79.59	52.46
Merged-chr6-116142414-3	chr6	116141909	116142909	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	Lx8|LINE|L1	50965.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	58.35	61.75	12.02	35.09	24.26	17.68	22.18	32.72	21.23
Merged-chr13-45052443-3	chr13	45051950	45052950	+	833.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50354.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	12.59	5.99	4.62	8.77	8.86	24.11	6.34	4.42	2.5
Merged-chr5-135400492-3	chr5	135399979	135400979	+	833.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5933.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.15	6.45	0.0	8.1	5.13	3.22	1.06	4.86	0.0
Merged-chr11-105485155-3	chr11	105484658	105485658	+	833.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-28423.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	45.76	48.84	36.07	38.46	35.92	40.99	45.42	58.37	29.98
Merged-chr3-65315919-2	chr3	65315410	65316410	+	833.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 7 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	-13225.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	4.0	8.29	5.55	14.84	19.59	12.86	1.06	3.98	2.5
Merged-chr12-91789928-3	chr12	91789448	91790448	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3512.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	10.87	7.37	0.0	10.8	6.53	3.22	4.22	3.54	5.0
Merged-chr5-90783881-3	chr5	90783384	90784384	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2217.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	4.58	6.45	7.4	8.1	5.6	4.82	3.17	2.65	2.5
Merged-chr17-37046756-3	chr17	37046202	37047202	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019439, exon 2 of 23)	exon (NM_019439, exon 2 of 23)	736.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	62.93	33.64	24.05	25.64	20.53	17.68	24.29	14.15	6.87
Merged-chr8-31113328-3	chr8	31112837	31113837	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	1491.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	10.3	17.97	12.02	8.77	12.13	13.66	23.24	12.82	15.61
Merged-chr2-11664137-3	chr2	11663646	11664646	+	833.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	21354.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	3.43	3.23	1.85	6.75	0.47	5.63	4.22	5.31	3.75
Merged-chr5-139017574-2	chr5	139017069	139018069	+	833.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001253890, exon 11 of 11)	3' UTR (NM_001253890, exon 11 of 11)	-22616.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	69.22	51.15	27.75	86.36	58.78	39.39	86.61	65.0	47.46
Merged-chr5-19951919-3	chr5	19951407	19952407	+	833.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015823, intron 1 of 21)	intron (NM_015823, intron 1 of 21)	44389.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	40.04	46.08	29.6	46.56	40.59	45.01	57.03	53.5	23.11
Merged-chr13-37778285-3	chr13	37777787	37778787	+	833.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47751.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	127.0	141.0	123.94	133.59	131.56	143.88	143.64	126.9	61.83
Merged-chr19-38043511-2	chr19	38043037	38044037	+	833.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	40.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	56.06	58.98	59.2	53.3	66.24	75.56	53.87	72.52	63.7
Merged-chr11-58093158-1	chr11	58092658	58093658	+	833.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10812.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	74.37	94.92	61.05	73.54	77.91	65.11	17.96	38.03	14.99
Merged-chr4-111002066-1	chr4	111001566	111002566	+	833.833313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-412940.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	14.87	17.05	18.5	4.05	7.0	10.45	5.28	11.05	1.87
Merged-chr8-18760044-1	chr8	18759544	18760544	+	833.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173189, intron 12 of 13)	intron (NM_173189, intron 12 of 13)	-18482.0	NM_007426	11601.0	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	3.43	6.45	5.55	3.37	7.46	10.45	3.17	2.21	5.0
Merged-chr5-113180397-2	chr5	113179900	113180900	+	833.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17087.0	NM_172884	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	17.16	10.6	12.95	4.72	8.4	12.86	1.06	2.65	3.12
Merged-chr4-133928925-3	chr4	133928379	133929379	+	833.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39112.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	65.21	52.53	39.77	62.07	56.91	49.83	73.93	83.13	63.7
Merged-chr6-135166889-2	chr6	135166389	135167389	+	833.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	1326.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	58.92	61.75	53.65	59.38	66.71	40.99	61.26	52.62	22.48
Merged-chr10-94225574-2	chr10	94225074	94226074	+	833.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26565.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	8.58	8.29	5.55	8.77	10.26	5.63	3.17	1.77	1.25
Merged-chr11-54029213-3	chr11	54028688	54029688	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1084.0	NM_001330304	30805.0	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	75.51	82.48	67.52	82.32	91.44	96.45	53.87	79.15	34.97
Merged-chr2-128377919-3	chr2	128377413	128378413	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	51438.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	66.36	43.77	22.2	39.81	30.32	32.96	62.31	49.52	39.35
Merged-chrX-163851078-3	chrX	163850558	163851558	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57959.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	6.29	2.3	0.0	3.37	2.33	1.61	4.22	5.75	2.5
Merged-chr1-165770429-3	chr1	165769926	165770926	+	833.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 3 of 4)	intron (NR_149310, intron 3 of 4)	6668.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	36.61	39.17	56.42	37.11	26.59	34.56	39.08	45.99	35.6
Merged-chr18-73574040-9	chr18	73573597	73574597	+	833.759277	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039214, intron 1 of 1)	intron (NM_001039214, intron 1 of 1)	1392.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	109.83	100.45	135.04	132.24	114.76	143.07	147.87	130.44	82.44
Merged-chr3-153917373-2	chr3	153916872	153917872	+	833.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-4406.0	NR_028094	19352.0	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	17.73	13.36	21.27	13.49	14.46	21.7	16.9	16.36	12.49
Merged-chr8-24438709-5	chr8	24438183	24439183	+	833.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026931, exon 1 of 1)	exon (NM_026931, exon 1 of 1)	263.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	72.08	80.64	50.87	104.58	107.3	81.18	73.93	110.54	72.45
Merged-chr4-53521734-3	chr4	53521216	53522216	+	833.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133891, intron 4 of 15)	L1MB3|LINE|L1	81303.0	NM_133891	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	3.43	5.99	5.55	12.14	4.2	4.82	3.17	3.98	11.24
Merged-chr5-146897162-3	chr5	146896653	146897653	+	833.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51504.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	5.72	2.76	0.0	7.42	4.2	3.22	7.39	1.33	4.37
Merged-chr19-8953202-3	chr19	8952726	8953726	+	833.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-606.0	NM_197993	70044.0	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	84.09	82.48	99.89	62.07	56.91	65.91	60.2	70.75	40.59
Merged-chr5-143629872-2	chr5	143629378	143630378	+	833.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	7431.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	25.74	34.1	14.8	31.71	23.79	22.51	12.67	12.38	18.11
Merged-chr1-152542003-3	chr1	152541515	152542515	+	833.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 9 of 17)	intron (NM_016846, intron 9 of 17)	83202.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	66.93	57.6	65.67	63.42	55.98	77.97	51.75	55.27	49.96
Merged-chr18-60747918-4	chr18	60747423	60748423	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	497.0	NM_001348100	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	155.03	135.47	142.44	163.96	117.09	118.16	253.48	164.04	78.07
Merged-chr16-44760399-3	chr16	44759902	44760902	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5334.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	30.32	35.02	27.75	39.81	34.52	42.6	39.08	35.82	29.98
Merged-chrX-106146559-1	chrX	106146059	106147059	+	833.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	intron (NM_205820, intron 1 of 2)	3284.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	22.88	36.4	24.05	37.78	36.39	50.64	42.25	36.26	24.36
Merged-chr8-25445289-3	chr8	25444818	25445818	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-73441.0	NM_001079909	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	11.44	7.83	1.85	14.84	13.53	16.08	10.56	4.42	8.74
Merged-chr2-157430055-1	chr2	157429555	157430555	+	833.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	B1F1|SINE|Alu	5762.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.15	5.53	4.62	6.75	7.93	8.04	5.28	1.77	2.5
Merged-chr6-88066864-3	chr6	88066372	88067372	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-17601.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	9.15	3.69	3.7	6.07	4.2	1.61	2.11	2.65	6.25
Merged-chr11-114702823-3	chr11	114702311	114703311	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-24601.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	62.93	31.79	26.82	16.87	10.26	16.88	39.08	28.3	14.99
Merged-chr6-121135126-1	chr6	121134626	121135626	+	833.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4104.0	NM_001270475	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	3.43	3.69	0.0	4.05	3.27	4.82	8.45	3.1	0.0
Merged-chr15-39173049-3	chr15	39172571	39173571	+	833.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-25215.0	NM_001256382	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	29.75	17.51	31.45	29.01	24.26	36.97	7.39	5.31	8.74
Merged-chrX-101636923-2	chrX	101636435	101637435	+	833.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3116.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	32.04	28.11	3.7	33.74	30.79	32.96	38.02	30.51	28.1
Merged-chr12-112743369-3	chr12	112742856	112743856	+	833.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024602, intron 14 of 18)	intron (NM_001024602, intron 14 of 18)	10034.0	NR_105905	102466989.0		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	4.58	0.46	5.55	4.72	1.87	1.61	1.06	0.44	3.12
Merged-chr7-31034885-2	chr7	31034377	31035377	+	833.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287217, intron 8 of 8)	intron (NM_001287217, intron 8 of 8)	5440.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	10.3	10.6	23.12	16.19	8.86	21.7	25.35	21.22	24.98
Merged-chr13-63565031-3	chr13	63564503	63565503	+	833.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	732.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	9.72	10.14	1.85	29.01	10.73	17.68	42.25	12.82	16.24
Merged-chr13-110599771-3	chr13	110599291	110600291	+	833.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	204747.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	137.29	126.72	49.02	188.92	186.6	69.93	117.24	122.48	32.48
Merged-chr2-19006301-3	chr2	19005791	19006791	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7972.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	101.25	105.06	117.47	76.24	63.91	69.13	50.7	72.07	44.34
Merged-chr14-79511742-3	chr14	79511246	79512246	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	-3928.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	31.46	19.35	28.67	29.69	26.59	27.33	31.69	30.51	16.24
Merged-chr6-65614460-3	chr6	65613954	65614954	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	24056.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	7.44	6.45	9.25	1.35	6.06	6.43	3.17	8.4	5.0
Merged-chr2-166683117-3	chr2	166682634	166683634	+	833.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	30698.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	82.95	75.11	37.92	116.73	69.98	64.3	148.92	116.73	32.48
Merged-chr16-5473693-2	chr16	5473198	5474198	+	833.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-217742.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	7.44	10.14	3.7	8.77	6.06	6.43	4.22	0.44	5.0
Merged-chr18-38403560-3	chr18	38403072	38404072	+	833.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-15335.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	31.46	24.88	7.4	66.12	41.05	24.11	25.35	12.82	6.25
Merged-chr4-133598884-3	chr4	133598383	133599383	+	833.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3285.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	13.73	14.28	12.02	20.24	12.13	24.11	11.62	12.38	16.24
Merged-chr18-14713526-3	chr18	14713037	14714037	+	833.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360823, intron 1 of 5)	intron (NM_001360823, intron 1 of 5)	7386.0	NM_001360823	73677.0	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	9.15	3.69	5.55	5.4	3.73	1.61	3.17	3.98	7.49
Merged-chr15-39616889-2	chr15	39616366	39617366	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 22 of 26)	intron (NM_053271, intron 22 of 26)	-42645.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.57	6.45	0.0	6.07	10.26	0.0	9.51	4.86	5.0
Merged-chr15-27621063-1	chr15	27620563	27621563	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013792, intron 2 of 6)	intron (NM_001013792, intron 2 of 6)	9630.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	9.15	7.37	12.95	22.27	7.46	11.25	15.84	7.96	3.75
Merged-chr5-110449291-2	chr5	110448798	110449798	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142642)	promoter-TSS (NM_001142642)	-795.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	22.88	17.05	34.22	24.29	16.79	30.54	34.85	24.76	11.24
Merged-chr3-130804037-1	chr3	130803537	130804537	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73639.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	10.87	2.3	7.4	17.54	7.0	4.82	13.73	5.31	10.62
Merged-chr7-111079865-2	chr7	111079365	111080365	+	833.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013507, intron 4 of 21)	intron (NM_013507, intron 4 of 21)	3165.0	NM_001040131	13690.0	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	8.01	6.91	14.8	12.14	8.86	4.82	11.62	6.63	18.11
Merged-chr17-9774964-1	chr17	9774464	9775464	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045433, exon 2 of 4)	non-coding (NR_045433, exon 2 of 4)	902.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	10.3	2.3	5.55	6.75	2.33	4.82	0.0	0.44	2.5
Merged-chr14-103929576-2	chr14	103929084	103930084	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-85108.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	15.45	15.21	7.4	22.27	17.26	20.9	12.67	11.05	8.74
Merged-chr7-24461566-2	chr7	24461101	24462101	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011113)	promoter-TSS (NM_011113)	-882.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	6.29	10.14	1.85	12.82	10.26	25.72	9.51	9.73	12.49
Merged-chr4-136043959-1	chr4	136043459	136044459	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7700.0	NR_154592	105245868.0		NR_154592		Gm48909	-	predicted gene, 48909	pseudo	5.72	1.38	6.47	8.1	5.6	3.22	2.11	3.98	1.87
Merged-chr4-3483012-2	chr4	3482531	3483531	+	833.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-54059.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	56.06	65.89	59.2	53.3	58.31	34.56	31.69	35.37	21.86
Merged-chr11-107432303-2	chr11	107431824	107432824	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	38396.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	21.17	16.59	13.87	50.6	30.32	30.54	32.74	13.27	8.12
Merged-chr11-54821097-2	chr11	54820608	54821608	+	833.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040284, intron 1 of 2)	intron (NR_040284, intron 1 of 2)	1189.0	NR_040284	432562.0	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228	LYR motif containing 7, opposite strand	ncRNA	12.01	2.76	5.55	10.8	5.6	5.63	7.39	1.33	4.37
Merged-chr5-103474436-3	chr5	103473949	103474949	+	833.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	49257.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	18.31	18.89	13.87	18.89	20.99	15.27	28.52	17.69	6.87
Merged-chr2-35108332-2	chr2	35107833	35108833	+	833.483337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	19.45	21.2	24.97	27.66	18.19	34.56	21.12	29.18	14.99
Merged-chr15-98994100-3	chr15	98993599	98994599	+	833.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8134.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	108.69	142.38	89.72	101.21	75.11	102.88	132.02	161.39	61.83
Merged-chr14-120268694-3	chr14	120268196	120269196	+	833.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6973.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	6.29	5.99	5.55	11.47	4.2	4.82	6.34	8.4	3.75
Merged-chr12-56440590-3	chr12	56440069	56441069	+	833.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88851.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	22.31	29.95	28.67	27.66	18.66	14.47	58.09	64.11	32.48
Merged-chr19-32210608-3	chr19	32210124	32211124	+	833.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	intron (NM_144792, intron 5 of 9)	389.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	46.91	37.32	7.4	92.44	91.9	76.36	28.52	20.34	13.74
Merged-chr1-135268277-3	chr1	135267765	135268765	+	833.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 4 of 9)	intron (NM_001159624, intron 4 of 9)	-9793.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	49.77	36.4	32.37	37.11	33.59	33.76	44.36	27.41	32.48
Merged-chr5-125441527-3	chr5	125441014	125442014	+	833.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029752)	promoter-TSS (NM_029752)	-54.0	NM_001359486	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	20.02	9.68	3.7	17.54	8.86	11.25	25.35	7.96	7.49
Merged-chr7-28807053-3	chr7	28806543	28807543	+	833.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3847.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	12.59	5.99	0.0	9.45	4.2	6.43	6.34	2.21	8.12
Merged-chr13-114818830-3	chr13	114818329	114819329	+	833.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113375, intron 1 of 5)	intron (NM_001113375, intron 1 of 5)	592.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	76.08	119.8	48.1	116.73	167.94	90.02	176.38	178.19	61.2
Merged-chr4-95048842-3	chr4	95048348	95049348	+	833.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010591)	TTS (NM_010591)	3374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	25.74	17.05	12.02	13.49	6.06	3.22	6.34	2.65	5.0
Merged-chr11-120784596-1	chr11	120784096	120785096	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009053)	promoter-TSS (NM_009053)	81.0	NM_145370	209318.0	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	72.65	34.1	42.55	51.28	32.66	45.82	64.43	26.53	10.62
Merged-chr4-63568143-3	chr4	63567662	63568662	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144905, intron 4 of 9)	MIRb|SINE|MIR	7935.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	9.15	12.44	20.35	17.54	6.53	16.08	19.01	6.19	6.87
Merged-chr14-103795830-1	chr14	103795330	103796330	+	833.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47871.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.72	0.46	1.85	4.72	7.46	7.23	0.0	3.54	2.5
Merged-chr8-40910963-3	chr8	40910471	40911471	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 7 of 11)	intron (NM_007514, intron 7 of 11)	-15262.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.29	1.38	2.77	4.05	0.47	2.41	4.22	3.98	3.75
Merged-chr6-142708625-2	chr6	142708132	142709132	+	833.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6358.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	10.3	5.53	6.47	7.42	2.8	4.82	3.17	4.86	7.49
Merged-chr17-55718836-3	chr17	55718307	55719307	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6171.0	NR_151542	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	26.31	26.26	30.52	43.18	25.66	14.47	22.18	21.22	14.36
Merged-chr2-19048378-3	chr2	19047876	19048876	+	833.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50057.0	NR_024323	74629.0	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	34.32	20.74	14.8	11.47	6.06	14.47	14.79	13.27	12.49
Merged-chr12-51966672-3	chr12	51966173	51967173	+	833.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177171, intron 1 of 35)	intron (NM_177171, intron 1 of 35)	4648.0	NM_177171	320487.0	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	63.5	95.84	51.8	60.72	72.31	58.68	102.45	98.16	54.33
Merged-chr5-125074696-3	chr5	125074208	125075208	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 14 of 46)	intron (NM_011424, intron 14 of 46)	71233.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	5.72	5.07	7.4	8.1	5.6	9.65	2.11	2.21	6.87
Merged-chr2-65238823-3	chr2	65238388	65239388	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027225)	promoter-TSS (NM_027225)	-262.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	16.02	5.07	3.7	4.05	0.93	3.22	3.17	0.0	3.75
Merged-chr4-132824175-3	chr4	132823678	132824678	+	833.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18956.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	19.45	5.99	7.4	8.77	2.33	10.45	13.73	7.07	6.25
Merged-chr14-78631093-2	chr14	78630593	78631593	+	833.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104044, intron 1 of 27)	B1F|SINE|Alu	-1803.0	NM_001281794	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	10.3	8.75	18.5	10.12	11.2	20.9	11.62	10.17	9.99
Merged-chr4-95211988-3	chr4	95211476	95212476	+	833.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-159754.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	19.45	14.75	1.85	37.78	15.86	18.49	19.01	11.94	9.37
Merged-chr6-94604731-3	chr6	94604222	94605222	+	833.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026255)	TTS (NM_026255)	1693.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	9.15	11.06	18.5	24.96	12.13	36.17	20.07	17.69	5.62
Merged-chr10-93273575-3	chr10	93273094	93274094	+	833.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	37565.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	8.01	10.14	23.12	18.89	22.86	28.94	8.45	6.19	5.62
Merged-chr8-91425589-2	chr8	91425091	91426091	+	833.1999509999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 3 of 8)	MTD|LTR|ERVL-MaLR	112066.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	8.58	10.6	7.4	16.19	9.8	12.06	9.51	7.96	10.62
Merged-chr19-40631455-3	chr19	40630967	40631967	+	833.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	intron (NM_001304721, intron 1 of 9)	19101.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	135.0	122.57	79.55	122.12	116.63	139.06	117.24	175.98	109.29
Merged-chr14-56042367-3	chr14	56041884	56042884	+	833.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008571, intron 1 of 4)	intron (NM_008571, intron 1 of 4)	261.0	NM_008571	17225.0	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	6.29	10.14	10.17	23.62	11.2	5.63	10.56	4.86	12.49
Merged-chr11-83618560-3	chr11	83618095	83619095	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-25508.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	32.61	25.8	20.35	53.98	62.98	64.3	71.82	39.8	36.85
Merged-chr3-51796568-3	chr3	51796065	51797065	+	833.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135386.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	45.19	38.71	33.3	33.06	18.19	32.96	25.35	20.34	29.35
Merged-chr15-59263639-1	chr15	59263139	59264139	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43309.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	16.02	17.97	11.1	26.31	22.39	28.94	24.29	19.9	8.12
Merged-chr5-43787673-1	chr5	43787173	43788173	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5524.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	15.45	18.43	34.22	33.74	18.66	16.88	23.24	15.92	20.61
Merged-chr1-65060287-2	chr1	65059794	65060794	+	833.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3146.0	NM_007776	12967.0	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	11.44	8.75	11.1	12.82	21.46	13.66	11.62	11.05	13.12
Merged-chr19-3423177-2	chr19	3422677	3423677	+	833.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8633.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	4.58	4.15	0.0	4.05	6.06	4.02	3.17	3.98	3.75
Merged-chr8-124751870-2	chr8	124751395	124752395	+	833.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081120)	promoter-TSS (NM_001081120)	-86.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	4.58	6.91	1.85	6.07	1.4	4.82	1.06	1.33	5.0
Merged-chr19-6952366-3	chr19	6951884	6952884	+	833.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007522)	TTS (NM_007522)	9822.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	89.24	78.79	119.32	70.17	52.72	122.98	47.53	58.37	83.69
Merged-chr1-164088103-2	chr1	164087610	164088610	+	833.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26034.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	8.58	6.91	12.95	7.42	8.4	10.45	8.45	10.61	12.49
Merged-chr15-26359005-2	chr15	26358518	26359518	+	833.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310774, intron 2 of 2)	intron (NM_001310774, intron 2 of 2)	49970.0	NM_001310774	211147.0	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	4.0	2.3	11.1	4.72	4.2	8.84	1.06	6.19	4.37
Merged-chr1-144320204-3	chr1	144319725	144320725	+	833.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71121.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	87.52	99.07	52.72	147.76	116.63	101.28	111.96	110.98	61.83
Merged-chr7-27526691-3	chr7	27526184	27527184	+	833.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033315, intron 1 of 3)	intron (NM_001033315, intron 1 of 3)	3423.0	NM_001033315	233020.0	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	6.29	2.3	9.25	2.02	1.87	3.22	2.11	1.77	2.5
Merged-chr12-84673957-1	chr12	84673457	84674457	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24850.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	33.18	25.34	24.05	32.39	21.46	30.54	96.11	111.87	47.46
Merged-chr8-10819280-1	chr8	10818780	10819780	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63174.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	9.72	8.75	0.0	8.77	5.6	4.82	12.67	6.19	3.75
Merged-chr8-40609943-2	chr8	40609456	40610456	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 1 of 13)	IAPLTR2a|LTR|ERVK	24836.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	2.29	0.92	4.62	6.07	4.67	2.41	148.92	175.54	94.3
Merged-chr4-11084935-1	chr4	11084435	11085435	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8730.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	5.15	2.76	1.85	2.02	1.87	6.43	1.06	3.1	2.5
Merged-chr6-113956047-1	chr6	113955547	113956547	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 2 of 21)	intron (NM_009723, intron 2 of 21)	-21366.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	7.44	3.69	0.0	2.02	4.67	3.22	1.06	0.44	1.25
Merged-chr17-36121591-2	chr17	36121098	36122098	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046286)	promoter-TSS (NR_046286)	-154.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	20.59	22.58	9.25	16.19	21.46	1.61	293.62	294.04	104.92
Merged-chr16-30389408-3	chr16	30388920	30389920	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001128094)	promoter-TSS (NM_001128094)	-890.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	421.03	516.54	335.76	350.18	394.67	305.44	434.09	568.63	251.06
Merged-chr14-76287305-1	chr14	76286805	76287805	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35843.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	14.3	10.14	9.25	24.29	10.73	9.65	11.62	9.29	6.87
Merged-chr18-84293165-3	chr18	84292667	84293667	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205009.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	46.91	49.76	17.57	47.9	55.05	32.96	53.87	46.43	20.61
Merged-chr3-104675508-2	chr3	104675006	104676006	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36842.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	7.44	3.23	17.57	5.4	1.87	1.61	5.28	1.33	1.87
Merged-chr7-132803692-1	chr7	132803192	132804192	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	9504.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	37.76	53.45	39.77	55.33	57.85	25.72	32.74	28.74	15.61
Merged-chr6-94158654-1	chr6	94158154	94159154	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	78788.0	NR_130996	78178.0	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	12.01	11.06	1.85	47.9	39.19	16.88	1.06	6.19	1.25
Merged-chr2-148599667-2	chr2	148599167	148600167	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72948.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.0	9.68	3.7	1.35	5.6	9.65	5.28	7.07	3.75
Merged-chr12-24786092-1	chr12	24785592	24786592	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-45507.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	13.16	15.21	10.17	8.1	20.99	10.45	1.06	5.31	3.12
Merged-chr5-4912114-1	chr5	4911614	4912614	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 12 of 14)	intron (NM_011074, intron 12 of 14)	-153898.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.86	5.53	0.0	4.72	3.73	0.0	1.06	0.0	1.25
Merged-chr10-88379651-1	chr10	88379151	88380151	+	833.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	CpG	239.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	38.33	22.12	25.9	49.93	23.79	50.64	51.75	22.99	21.23
Merged-chr18-4873229-3	chr18	4872740	4873740	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	60754.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.86	2.76	0.0	4.05	3.27	3.22	0.0	2.65	2.5
Merged-chr18-4799376-1	chr18	4798876	4799876	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-13110.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	8.58	7.37	1.85	4.72	3.73	4.82	5.28	4.86	5.0
Merged-chr1-183668058-1	chr1	183667558	183668558	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80919.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	9.72	7.83	7.4	2.7	3.27	11.25	12.67	13.27	10.62
Merged-chr2-160015141-1	chr2	160014641	160015641	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1512.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	13.73	8.29	9.25	12.14	7.46	12.06	11.62	10.17	7.49
Merged-chr18-66502233-1	chr18	66501733	66502733	+	833.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1945.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	0.57	2.76	1.85	6.07	4.67	1.61	10.56	5.31	5.0
Merged-chr4-14930399-1	chr4	14929899	14930899	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243100)	promoter-TSS (NM_001243100)	-242.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	2.29	1.84	0.0	1.35	0.93	0.0	1.06	0.0	2.5
Merged-chr2-180116256-1	chr2	180115756	180116756	+	833.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3110.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	43.48	35.02	42.55	26.99	23.79	44.21	39.08	21.22	22.48
Merged-chr8-106753673-1	chr8	106753173	106754173	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	70605.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	4.0	2.3	1.85	12.82	4.67	15.27	9.51	2.65	0.62
Merged-chr4-137603928-2	chr4	137603437	137604437	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 1 of 26)	intron (NM_001355588, intron 1 of 26)	9765.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	53.2	44.24	43.47	35.09	26.12	41.8	44.36	39.35	45.59
Merged-chr1-144283520-1	chr1	144283020	144284020	+	833.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34416.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	24.03	23.04	44.4	22.27	24.72	20.09	13.73	13.71	23.11
Merged-chr6-134642034-3	chr6	134641505	134642505	+	832.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026371, intron 1 of 3)	intron (NM_026371, intron 1 of 3)	1065.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	44.05	36.4	39.77	39.81	53.65	61.89	34.85	25.2	15.61
Merged-chr10-77623119-4	chr10	77622529	77623529	+	832.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	708.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	208.8	181.09	156.32	212.54	180.07	188.09	209.12	169.35	109.29
Merged-chr4-53410921-3	chr4	53410403	53411403	+	832.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	10.3	6.91	7.4	12.14	13.06	4.82	12.67	10.61	8.74
Merged-chr18-38962702-3	chr18	38962200	38963200	+	832.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-30445.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	7.44	5.53	3.7	8.77	5.6	6.43	2.11	3.1	4.37
Merged-chr17-3224621-3	chr17	3224127	3225127	+	832.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101946.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	9.72	4.15	5.55	4.05	1.4	3.22	3.17	1.77	7.49
Merged-chr18-67700555-3	chr18	67700043	67701043	+	832.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008977, intron 2 of 9)	intron (NM_008977, intron 2 of 9)	24078.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	52.06	66.35	77.7	42.51	27.06	53.05	71.82	94.18	70.57
Merged-chr15-80235466-2	chr15	80234964	80235964	+	832.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357659, intron 2 of 6)	MIRc|SINE|MIR	1384.0	NM_178719	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	22.88	14.28	3.7	15.52	15.86	8.84	10.56	8.4	2.5
Merged-chr9-62972372-3	chr9	62971891	62972891	+	832.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	8488.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	133.86	150.68	99.89	90.41	75.57	72.34	135.19	138.4	61.2
Merged-chr11-95520909-3	chr11	95520414	95521414	+	832.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6349.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	5.15	2.3	1.85	15.52	4.2	1.61	4.22	0.88	0.0
Merged-chr6-118126761-2	chr6	118126263	118127263	+	832.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362149, intron 2 of 7)	intron (NM_001362149, intron 2 of 7)	12067.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	26.89	23.96	4.62	33.06	29.86	24.11	13.73	15.48	8.12
Merged-chr12-34547262-3	chr12	34546771	34547771	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L1M5|LINE|L1	-18382.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	9.15	10.14	10.17	5.4	6.06	3.22	13.73	10.61	14.36
Merged-chr2-92296618-3	chr2	92296125	92297125	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	74432.0	NM_001290774	228366.0	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	2.86	5.99	9.25	5.4	2.8	1.61	5.28	7.96	5.0
Merged-chr8-66323210-3	chr8	66322701	66323701	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-63100.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	16.59	16.13	16.65	8.1	10.73	16.08	13.73	11.5	9.37
Merged-chr3-28057153-3	chr3	28056666	28057666	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 12 of 25)	intron (NM_008875, intron 12 of 25)	72995.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.0	4.15	0.0	4.72	7.0	6.43	3.17	6.19	8.74
Merged-chr7-19619183-3	chr7	19618698	19619698	+	832.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290457, intron 3 of 10)	intron (NM_001290457, intron 3 of 10)	10240.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	6.86	5.53	7.4	17.54	5.6	16.08	8.45	7.07	5.0
Merged-chr12-21347071-2	chr12	21346519	21347519	+	832.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277266, intron 6 of 19)	intron (NM_001277266, intron 6 of 19)	26613.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	30.32	29.03	7.4	47.9	32.19	19.29	25.35	18.57	2.5
Merged-chr3-104541472-3	chr3	104540972	104541972	+	832.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29554.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	6.86	4.15	1.85	4.05	3.73	4.02	1.06	0.0	5.62
Merged-chr1-131967447-1	chr1	131966947	131967947	+	832.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 1 of 4)	intron (NM_001177628, intron 1 of 4)	-3162.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	17.16	20.74	5.55	17.54	14.46	9.65	11.62	9.29	3.75
Merged-chr10-34139900-1	chr10	34139400	34140400	+	832.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11928.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	16.02	20.27	14.8	18.22	15.86	8.84	29.57	13.71	21.86
Merged-chr10-40882997-3	chr10	40882501	40883501	+	832.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031877)	promoter-TSS (NM_031877)	142.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	159.6	211.96	114.69	161.93	199.2	155.93	226.02	229.93	98.05
Merged-chr1-132384477-3	chr1	132383986	132384986	+	832.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5832.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	22.88	29.49	12.95	20.24	13.06	20.09	17.96	14.15	17.49
Merged-chr17-83695973-3	chr17	83695474	83696474	+	832.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10189.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	10.3	6.91	11.1	12.14	4.2	14.47	12.67	6.19	3.75
Merged-chr2-38932028-1	chr2	38931528	38932528	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172854)	promoter-TSS (NM_172854)	48.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	2.86	3.69	0.0	3.37	3.73	1.61	1.06	0.44	2.5
Merged-chr12-27313092-1	chr12	27312592	27313592	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29626.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	5.15	8.29	7.4	18.22	24.26	15.27	0.0	1.77	5.62
Merged-chr9-41084363-3	chr9	41083909	41084909	+	832.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-4903.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	9.72	4.15	9.25	10.12	10.73	6.43	21.12	21.22	11.24
Merged-chr6-29248024-1	chr6	29247524	29248524	+	832.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-24464.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	24.6	8.75	24.97	30.36	14.93	22.51	21.12	5.75	8.74
Merged-chr1-57639261-2	chr1	57638762	57639762	+	832.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135599.0	NM_144882	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	5.72	9.22	9.25	19.57	23.79	17.68	11.62	12.82	8.74
Merged-chr2-85560410-3	chr2	85559887	85560887	+	832.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18828.0	NM_146437	258429.0	Mm.377497	NM_146437	ENSMUSG00000111179	Olfr996	MOR175-4	olfactory receptor 996	protein-coding	13.16	12.44	10.17	9.45	11.66	6.43	9.51	9.29	10.62
Merged-chr13-54342867-3	chr13	54342376	54343376	+	832.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-28473.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	17.73	19.35	24.97	17.54	12.13	20.9	24.29	11.5	26.85
Merged-chr12-36119455-2	chr12	36118934	36119934	+	832.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025840, intron 5 of 11)	intron (NM_025840, intron 5 of 11)	29055.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	4.58	6.45	7.4	8.1	3.73	9.65	9.51	7.96	18.74
Merged-chr2-117962878-5	chr2	117962401	117963401	+	832.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	MTD|LTR|ERVL-MaLR	140973.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	89.81	91.24	86.95	93.11	100.3	142.27	117.24	114.96	78.07
Merged-chr9-60492435-3	chr9	60491915	60492915	+	832.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040426, intron 2 of 17)	CT-rich|Low_complexity|Low_complexity	18620.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	12.01	9.22	16.65	33.06	26.12	18.49	15.84	6.63	13.12
Merged-chr18-37933692-3	chr18	37933242	37934242	+	832.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	1734.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	38.33	45.62	12.95	43.18	32.66	22.51	31.69	40.68	26.23
Merged-chr3-88407188-3	chr3	88406678	88407678	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3219.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	20.02	23.04	34.22	21.59	14.0	8.84	41.19	35.82	7.49
Merged-chr12-99284636-3	chr12	99284162	99285162	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-121854.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	10.3	4.61	12.95	6.07	6.53	11.25	14.79	3.1	12.49
Merged-chr14-118098473-3	chr14	118097964	118098964	+	832.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	34301.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	6.29	1.38	1.85	0.67	4.2	1.61	4.22	5.31	2.5
Merged-chr7-110123005-3	chr7	110122479	110123479	+	832.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009516, intron 1 of 10)	CpG	920.0	NM_009516	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	44.05	46.54	36.07	44.53	46.18	22.51	73.93	55.71	24.98
Merged-chr4-3986318-3	chr4	3985826	3986826	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	33337.0	NM_181989	242285.0	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	5.72	4.15	5.55	5.4	6.06	5.63	1.06	3.54	3.75
Merged-chr1-105890746-1	chr1	105890246	105891246	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99536.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	6.29	2.3	0.0	4.05	3.27	1.61	5.28	2.65	4.37
Merged-chr17-13056354-2	chr17	13055857	13056857	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4077.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	5.15	5.99	5.55	3.37	4.2	11.25	7.39	4.86	0.0
Merged-chr11-4973424-1	chr11	4972924	4973924	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-13400.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	11.44	4.61	4.62	10.8	10.26	8.84	2.11	2.21	1.25
Merged-chr10-120167669-2	chr10	120167161	120168161	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 6 of 11)	RLTR28|LTR|ERVL	33936.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	4.0	7.37	1.85	5.4	1.87	4.82	16.9	7.07	14.99
Merged-chr13-100398808-2	chr13	100398300	100399300	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	54064.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	2.29	3.23	0.0	6.07	4.67	5.63	6.34	5.31	5.62
Merged-chr15-90678693-3	chr15	90678194	90679194	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	694.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	20.59	19.81	4.62	42.51	35.92	29.74	27.46	17.69	11.24
Merged-chr8-72033080-2	chr8	72032571	72033571	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-23445.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	3.43	5.99	1.85	0.67	0.0	0.8	2.11	0.44	3.75
Merged-chr16-94607575-1	chr16	94607075	94608075	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-3844.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	36.61	33.18	51.8	35.76	31.26	26.53	38.02	49.08	25.61
Merged-chr4-133752787-4	chr4	133752324	133753324	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	787.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	206.51	180.17	167.42	168.68	114.29	190.5	158.43	94.18	128.03
Merged-chr6-56485255-1	chr6	56484755	56485755	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115621.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	6.29	6.91	7.4	5.4	6.06	3.22	8.45	3.98	6.25
Merged-chr7-80202114-3	chr7	80201607	80202607	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	3666.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	58.92	46.54	57.35	76.92	77.44	45.82	86.61	78.71	16.86
Merged-chr9-56207315-2	chr9	56206825	56207825	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 7 of 7)	exon (NM_172924, exon 7 of 7)	-46255.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.29	5.07	4.62	7.42	7.93	12.06	3.17	6.63	3.75
Merged-chr2-72984394-3	chr2	72983894	72984894	+	832.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045269, intron 1 of 2)	intron (NR_045269, intron 1 of 2)	-3948.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	16.02	11.06	5.55	16.87	9.33	11.25	11.62	11.94	16.24
Merged-chr11-53457227-1	chr11	53456727	53457727	+	832.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290789)	promoter-TSS (NM_001290789)	22.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	4.58	5.53	1.85	6.07	4.2	0.0	5.28	2.21	3.75
Merged-chr13-102666941-3	chr13	102666440	102667440	+	832.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26607.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.59	18.43	20.35	9.45	4.2	5.63	8.45	13.27	8.12
Merged-chr5-125147397-3	chr5	125146982	125147982	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 1 of 46)	intron (NM_011424, intron 1 of 46)	31732.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	21.17	12.44	17.57	17.54	12.6	7.23	27.46	12.38	8.12
Merged-chr18-12760416-3	chr18	12759929	12760929	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19074.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	22.31	18.43	23.12	14.17	19.59	24.92	21.12	10.61	26.23
Merged-chr3-109323958-3	chr3	109323425	109324425	+	832.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16758.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	13.16	10.6	12.02	17.54	8.86	6.43	10.56	6.19	13.12
Merged-chr1-181246675-1	chr1	181246175	181247175	+	832.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-34697.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	68.65	56.68	83.25	58.03	56.91	98.06	70.76	85.78	80.56
Merged-chr1-127202450-3	chr1	127201962	127202962	+	832.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2524.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	2.29	5.07	5.55	10.8	9.33	3.22	8.45	4.86	8.12
Merged-chr6-108146627-3	chr6	108146136	108147136	+	832.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 6 of 8)	intron (NM_145937, intron 6 of 8)	38947.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	14.3	11.06	12.02	13.49	11.2	11.25	14.79	11.94	9.99
Merged-chr3-104092953-2	chr3	104092455	104093455	+	832.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133853, intron 3 of 21)	intron (NM_133853, intron 3 of 21)	-124639.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	4.58	5.99	3.7	12.82	9.8	9.65	6.34	3.1	2.5
Merged-chr13-98589115-3	chr13	98588631	98589631	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	48279.0	NM_026685	68344.0	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	2.86	1.84	5.55	6.07	0.93	3.22	0.0	0.44	3.75
Merged-chr12-46818834-4	chr12	46818317	46819317	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021361)	promoter-TSS (NM_021361)	-42.0	NM_021361	664883.0	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	2.29	4.15	1.85	8.1	8.4	2.41	9.51	5.75	0.0
Merged-chr2-120576272-3	chr2	120575799	120576799	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	Tigger7|DNA|TcMar-Tigger	8628.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	86.95	89.85	49.95	88.39	45.25	57.87	87.66	118.06	45.59
Merged-chr1-45917354-2	chr1	45916885	45917885	+	832.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	intron (NM_016917, intron 5 of 7)	8209.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	50.91	77.87	50.87	73.54	54.11	54.66	90.83	91.53	41.22
Merged-chr8-86611009-1	chr8	86610509	86611509	+	832.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-13034.0	NM_025827	66887.0	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	5.15	3.23	17.57	8.77	7.0	10.45	5.28	4.42	8.74
Merged-chr8-75103590-3	chr8	75103062	75104062	+	832.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-5947.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	15.45	13.82	17.57	8.1	11.2	25.72	9.51	8.4	19.36
Merged-chr1-106561593-3	chr1	106561102	106562102	+	832.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-14971.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.72	4.15	1.85	6.75	1.87	3.22	6.34	6.63	2.5
Merged-chr10-51535496-3	chr10	51535007	51536007	+	832.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	44609.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	20.02	14.28	4.62	17.54	7.93	9.65	10.56	6.63	10.62
Merged-chr5-115897278-3	chr5	115896780	115897780	+	832.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007708, intron 8 of 46)	intron (NM_007708, intron 8 of 46)	51624.0	NM_007708	12704.0	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	2.29	3.69	0.0	7.42	2.8	9.65	11.62	2.21	2.5
Merged-chr4-47312904-1	chr4	47312404	47313404	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009928, exon 40 of 40)	3' UTR (NM_009928, exon 40 of 40)	-40318.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	14.3	10.14	7.4	24.29	27.06	16.88	13.73	14.15	8.74
Merged-chr18-57052328-1	chr18	57051828	57052828	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76949.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	5.15	4.15	5.55	6.07	2.33	0.8	4.22	4.42	1.25
Merged-chr9-41207960-2	chr9	41207449	41208449	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040392, intron 1 of 4)	intron (NR_040392, intron 1 of 4)	1794.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	151.59	211.04	81.4	136.29	182.87	100.47	167.93	237.44	105.55
Merged-chr8-61875492-3	chr8	61874990	61875990	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	27200.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	6.86	3.69	1.85	2.02	5.13	6.43	4.22	1.33	1.25
Merged-chr15-93953743-2	chr15	93953244	93954244	+	832.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26633.0	NR_045737	77248.0	Mm.410768	NR_045737	ENSMUSG00000116360	9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	4.58	7.37	5.55	4.72	6.53	1.61	9.51	3.54	3.75
Merged-chr13-112998547-3	chr13	112998053	112999053	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001037914, exon 6 of 7)	exon (NM_001037914, exon 6 of 7)	4685.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	15.45	5.07	7.4	2.02	3.73	1.61	4.22	1.77	3.75
Merged-chr13-45457556-2	chr13	45457013	45458013	+	832.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49931.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	45.19	36.4	25.9	45.88	44.78	40.19	12.67	12.38	7.49
Merged-chr9-118489793-3	chr9	118489258	118490258	+	832.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11569.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	1.14	5.99	2.77	0.67	1.4	7.23	0.0	2.21	1.25
Merged-chr18-50014738-3	chr18	50014236	50015236	+	832.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	-16248.0	NM_001360935	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	54.92	52.99	31.45	49.93	42.45	24.11	21.12	23.88	19.36
Merged-chr2-91696386-2	chr2	91695899	91696899	+	832.1999509999999	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355416, intron 1 of 17)	B4A|SINE|B4	14193.0	NM_145528	51897.0	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	4.0	3.23	3.7	4.72	12.13	6.43	4.22	3.54	7.49
Merged-chr3-101595418-3	chr3	101594919	101595919	+	832.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	9288.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	46.34	49.76	40.7	56.68	30.79	42.6	40.14	41.56	41.22
Merged-chr2-91090417-1	chr2	91089917	91090917	+	832.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6261.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	41.76	56.22	48.1	60.72	36.39	48.23	73.93	46.43	36.22
Merged-chr2-145741798-3	chr2	145741310	145742310	+	832.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	40615.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	47.48	40.09	22.2	45.88	40.12	43.4	29.57	45.54	26.85
Merged-chr1-59464863-1	chr1	59464363	59465363	+	832.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17284.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	10.3	6.91	3.7	14.17	9.33	8.84	9.51	9.29	6.25
Merged-chr17-86337284-2	chr17	86336783	86337783	+	832.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-50105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.43	2.3	2.77	3.37	0.0	9.65	5.28	3.1	4.37
Merged-chr15-30609322-2	chr15	30608820	30609820	+	832.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-429806.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	17.73	18.43	22.2	17.54	14.46	10.45	22.18	15.03	18.74
Merged-chr2-117374397-3	chr2	117373879	117374879	+	832.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31502.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	60.64	46.08	35.15	43.86	20.53	30.54	77.1	53.06	16.24
Merged-chr2-137119003-2	chr2	137118524	137119524	+	832.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2504.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.43	2.76	0.0	5.4	5.13	3.22	2.11	2.21	1.25
Merged-chr11-98801607-2	chr11	98801104	98802104	+	832.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001361932)	TTS (NM_001361932)	2950.0	NM_001361934	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	13.73	15.67	27.75	10.12	22.39	32.96	24.29	21.22	17.49
Merged-chr5-147459940-3	chr5	147459447	147460447	+	832.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028291, intron 4 of 18)	intron (NM_028291, intron 4 of 18)	29791.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	18.88	12.9	19.42	9.45	7.46	6.43	19.01	14.15	11.87
Merged-chr4-155708755-3	chr4	155708244	155709244	+	832.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	B2_Mm2|SINE|B2	3929.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	28.6	41.47	51.8	38.46	33.12	42.6	40.14	30.07	29.98
Merged-chr9-97018978-1	chr9	97018478	97019478	+	832.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145134)	promoter-TSS (NM_145134)	-623.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.57	0.0	0.0	2.02	1.4	1.61	5.28	4.42	7.49
Merged-chr17-34283186-2	chr17	34282674	34283674	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010378, exon 4 of 5)	3' UTR (NM_010378, exon 4 of 5)	4597.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	29.17	10.14	25.9	2.7	3.27	0.8	8.45	9.29	6.25
Merged-chr10-81411040-1	chr10	81410540	81411540	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152732, intron 1 of 1)	intron (NR_152732, intron 1 of 1)	1465.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	31.46	29.03	52.72	33.06	28.92	40.99	30.63	27.41	19.98
Merged-chr8-46680825-1	chr8	46680325	46681325	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M6|LINE|L1	58690.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	13.16	9.68	11.1	11.47	8.86	21.7	13.73	10.61	8.74
Merged-chr3-55113167-3	chr3	55112633	55113633	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	967.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	140.73	171.87	105.44	145.06	174.94	94.04	188.0	227.72	92.43
Merged-chr13-23449314-1	chr13	23448814	23449814	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16587.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	4.58	5.53	5.55	4.05	2.33	5.63	10.56	5.75	3.75
Merged-chr1-92831781-1	chr1	92831281	92832281	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_016696, exon 1 of 9)	5' UTR (NM_016696, exon 1 of 9)	136.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	3.43	0.46	4.62	6.07	3.27	3.22	2.11	1.77	0.0
Merged-chr4-154981921-1	chr4	154981421	154982421	+	832.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305804)	TTS (NM_001305804)	17798.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	3.43	2.3	8.32	5.4	1.87	5.63	8.45	2.21	7.49
Merged-chr13-91037492-1	chr13	91036992	91037992	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 4 of 7)	PB1D7|SINE|Alu	114370.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	9.72	6.45	10.17	8.1	3.73	16.08	3.17	5.75	9.99
Merged-chr5-74628002-3	chr5	74627486	74628486	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359074, intron 2 of 10)	intron (NM_001359074, intron 2 of 10)	49886.0	NM_001159580	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.72	1.38	5.55	8.1	5.6	11.25	5.28	1.77	11.24
Merged-chr11-26789445-3	chr11	26788948	26789948	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4340.0	NR_002890	654472.0	Mm.347777	NR_002890		Gm12070	-	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	10.87	6.45	7.4	6.75	5.13	2.41	12.67	3.1	4.37
Merged-chr12-55467030-3	chr12	55466518	55467518	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25629.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	13.16	8.75	8.32	20.92	20.99	18.49	20.07	5.75	3.75
Merged-chr12-32435297-1	chr12	32434797	32435797	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56508.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	6.86	3.23	1.85	9.45	6.06	6.43	2.11	2.65	3.75
Merged-chr13-108043122-1	chr13	108042622	108043622	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1352.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	29.17	33.64	17.57	30.36	12.6	22.51	54.92	45.99	44.97
Merged-chr6-100667010-1	chr6	100666510	100667510	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181590, intron 2 of 10)	intron (NM_181590, intron 2 of 10)	4147.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	5.15	3.69	7.4	3.37	6.06	1.61	3.17	1.77	1.25
Merged-chr14-25413727-3	chr14	25413239	25414239	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45446.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	17.73	9.68	16.65	14.84	8.4	8.84	15.84	7.52	2.5
Merged-chr9-57524616-1	chr9	57524116	57525116	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	3384.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	24.03	32.25	39.77	26.31	22.86	51.44	42.25	59.25	43.09
Merged-chrX-103530043-2	chrX	103529552	103530552	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15448.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	39.47	51.61	16.65	26.99	38.72	30.54	27.46	42.01	41.22
Merged-chr8-66388877-2	chr8	66388374	66389374	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	2573.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	28.03	51.61	51.8	39.13	27.99	45.82	60.2	50.85	27.48
Merged-chr2-104450906-2	chr2	104450408	104451408	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010434, intron 2 of 15)	L2a|LINE|L2	-21968.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	13.73	15.67	14.8	6.75	4.67	8.84	10.56	10.17	13.12
Merged-chr3-9752470-1	chr3	9751970	9752970	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001195031, exon 3 of 9)	5' UTR (NM_001195031, exon 3 of 9)	81209.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	12.01	17.97	17.57	36.43	26.12	27.33	22.18	15.92	14.36
Merged-chr8-121971862-1	chr8	121971362	121972362	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	-6162.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	6.86	3.69	3.7	5.4	2.33	4.82	4.22	3.98	5.62
Merged-chr2-164067346-1	chr2	164066846	164067846	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291155, intron 1 of 6)	intron (NM_001291155, intron 1 of 6)	3756.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	28.03	35.02	29.6	32.39	20.53	19.29	32.74	33.16	26.85
Merged-chr11-32551790-1	chr11	32551290	32552290	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	18524.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	9.15	20.27	17.57	20.24	14.0	21.7	9.51	9.29	13.74
Merged-chr13-41359549-3	chr13	41359047	41360047	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-546.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	64.07	43.77	37.92	34.41	38.25	51.44	54.92	39.35	21.86
Merged-chr14-25479944-2	chr14	25479451	25480451	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	20766.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	33.75	38.25	39.77	41.16	27.52	47.42	43.3	49.96	32.48
Merged-chr6-29697183-1	chr6	29696683	29697683	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301407, intron 1 of 7)	intron (NM_001301407, intron 1 of 7)	2969.0	NM_146173	232670.0	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	10.87	3.23	0.0	3.37	2.33	3.22	5.28	2.65	5.62
Merged-chr13-51908753-3	chr13	51908252	51909252	+	832.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62077.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	10.87	16.13	7.4	19.57	19.13	9.65	20.07	12.82	3.75
Merged-chr2-165299966-1	chr2	165299466	165300466	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302754, intron 9 of 19)	intron (NM_001302754, intron 9 of 19)	-12128.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	27.46	20.27	16.65	25.64	15.86	33.76	21.12	25.65	9.37
Merged-chr8-117342617-1	chr8	117342117	117343117	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-6553.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	132.14	88.93	51.8	109.3	66.71	60.28	121.46	104.79	59.33
Merged-chr14-26652088-1	chr14	26651588	26652588	+	832.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007479, intron 3 of 5)	B2_Mm2|SINE|B2	13954.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	10.87	4.15	7.4	6.07	2.8	11.25	12.67	7.07	3.75
Merged-chr13-24937555-3	chr13	24937046	24938046	+	831.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_102323, exon 1 of 2)	non-coding (NR_102323, exon 1 of 2)	115.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	16.59	7.37	0.0	15.52	7.93	4.82	5.28	5.31	5.0
Merged-chr13-9152471-2	chr13	9151980	9152980	+	831.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 11 of 17)	intron (NM_172585, intron 11 of 17)	58599.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	10.3	11.98	11.1	18.22	11.66	14.47	9.51	14.59	13.74
Merged-chr2-168229249-3	chr2	168228827	168229827	+	831.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132310, intron 1 of 11)	intron (NR_132310, intron 1 of 11)	1052.0	NM_010072	13480.0	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	139.01	152.52	84.17	120.1	125.02	75.56	121.46	134.42	69.95
Merged-chr3-95654713-3	chr3	95654218	95655218	+	831.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4003.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	119.56	109.67	61.97	99.18	78.37	55.46	65.48	89.76	51.84
Merged-chr8-115568564-3	chr8	115568062	115569062	+	831.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138332.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	9.15	12.9	9.25	8.1	10.26	19.29	7.39	6.19	11.24
Merged-chr8-31112484-3	chr8	31111981	31112981	+	831.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175136, intron 1 of 5)	intron (NM_175136, intron 1 of 5)	635.0	NM_175136	68867.0	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	39.47	47.92	50.87	30.36	37.79	37.78	59.15	45.99	48.71
Merged-chr2-32360951-3	chr2	32360458	32361458	+	831.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2052.0	NM_001252538	68379.0	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	72.08	58.52	65.67	66.12	76.51	44.21	55.98	49.96	45.59
Merged-chr1-136636786-3	chr1	136636232	136637232	+	831.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11831.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	121.28	137.77	121.17	107.95	82.11	84.4	106.67	164.04	62.45
Merged-chr8-36149576-2	chr8	36149075	36150075	+	831.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	1.72	9.22	15.72	4.05	8.86	8.84	1.06	2.21	5.0
Merged-chr8-126537498-3	chr8	126536986	126537986	+	831.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55950.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	30.32	15.67	1.85	60.72	33.12	24.11	24.29	11.5	6.25
Merged-chr7-128391522-4	chr7	128391035	128392035	+	831.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	26637.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	152.17	152.52	159.09	130.9	117.09	122.98	116.18	151.66	92.43
Merged-chr19-24432205-1	chr19	24431705	24432705	+	831.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	45269.0	NM_026520	68034.0	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|Gm9849	family with sequence similarity 122, member A	protein-coding	2.86	3.69	5.55	2.7	0.93	4.82	22.18	13.27	5.0
Merged-chr7-90026203-3	chr7	90025696	90026696	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2963.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	22.88	12.9	16.65	16.19	14.46	29.74	21.12	23.43	19.98
Merged-chr12-105785920-3	chr12	105785425	105786425	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	1228.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	106.4	133.63	71.22	120.77	130.16	66.71	133.08	141.05	53.71
Merged-chr18-46524498-3	chr18	46523976	46524976	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173423, exon 2 of 3)	exon (NM_173423, exon 2 of 3)	1495.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	262.0	315.18	162.79	219.96	254.71	217.83	286.23	325.88	164.25
Merged-chr8-107269385-3	chr8	107268868	107269868	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).3	MTE2b|LTR|ERVL-MaLR	13204.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	7.44	9.68	9.25	22.27	11.66	12.86	12.67	7.07	12.49
Merged-chr5-140568463-3	chr5	140567980	140568980	+	831.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3413.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	5.15	7.83	7.4	8.1	7.93	3.22	6.34	4.42	0.0
Merged-chr5-105528219-2	chr5	105527706	105528706	+	831.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	8735.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	28.6	27.65	14.8	35.76	33.59	20.09	7.39	4.42	5.0
Merged-chr17-50513025-3	chr17	50512538	50513538	+	831.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	3491.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	96.68	86.17	47.17	70.85	88.17	63.5	99.28	90.64	24.98
Merged-chr2-11512324-1	chr2	11511824	11512824	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	ORR1C1|LTR|ERVL-MaLR	-10234.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	34.32	36.4	47.17	40.48	40.12	44.21	48.58	38.47	27.48
Merged-chr7-54861421-1	chr7	54860921	54861921	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	26176.0	NM_178705	233271.0	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	2.29	3.23	1.85	7.42	9.33	10.45	1.06	2.21	0.62
Merged-chr4-40829173-2	chr4	40828738	40829738	+	831.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	B2_Mm2|SINE|B2	20900.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	10.3	8.29	16.65	20.24	12.6	16.08	22.18	15.48	9.37
Merged-chr4-141157722-3	chr4	141157207	141158207	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	9785.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	92.67	80.18	67.52	83.66	75.57	75.56	104.56	94.62	73.69
Merged-chr17-34895203-3	chr17	34894629	34895629	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198886, intron 1 of 1)	CpG	570.0	NM_198886	193736.0	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	32.04	24.42	22.2	45.88	17.73	45.01	32.74	22.55	25.61
Merged-chr18-32369961-3	chr18	32369468	32370468	+	831.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	intron (NR_045403, intron 2 of 2)	-7249.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	17.73	5.53	0.0	8.1	7.0	5.63	10.56	6.19	8.12
Merged-chr17-88116388-4	chr17	88115850	88116850	+	831.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-9162.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	18.88	15.67	22.2	18.22	14.0	17.68	25.35	21.22	17.49
Merged-chr2-35211707-5	chr2	35211195	35212195	+	831.695251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-10575.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	86.38	41.01	36.07	71.52	35.92	28.94	53.87	52.18	19.36
Merged-chr11-61930828-3	chr11	61930328	61931328	+	831.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019921)	promoter-TSS (NM_019921)	-571.0	NM_019921	56697.0	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	326.07	382.91	276.56	295.53	299.03	231.49	246.09	416.08	186.73
Merged-chr3-138966497-3	chr3	138965998	138966998	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 4 of 13)	intron (NM_001356388, intron 4 of 13)	108703.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	15.45	6.91	19.42	11.47	10.73	9.65	4.22	9.29	9.99
Merged-chr10-127171086-3	chr10	127170558	127171558	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008080, exon 10 of 11)	exon (NM_008080, exon 10 of 11)	5227.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.0	0.0	1.85	0.67	0.93	3.22	2.11	0.88	5.0
Merged-chrY-1291701-1	chrY	1291201	1292201	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5088.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	4.0	5.99	0.0	5.4	2.33	3.22	5.28	5.31	8.74
Merged-chr12-35067825-1	chr12	35067325	35068325	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	20636.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	13.73	24.42	12.95	19.57	25.19	20.09	24.29	18.57	12.49
Merged-chr7-101548359-1	chr7	101547859	101548859	+	831.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	7443.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	63.5	59.9	18.5	107.95	96.57	60.28	234.47	357.27	110.54
Merged-chr8-79448737-1	chr8	79448237	79449237	+	831.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-49269.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	11.44	15.67	37.0	24.96	14.0	24.11	19.01	17.69	16.86
Merged-chr18-55391778-3	chr18	55391295	55392295	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-399204.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	8.58	11.06	5.55	3.37	7.46	3.22	6.34	3.98	3.75
Merged-chr7-120098602-3	chr7	120098119	120099119	+	831.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3807.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.43	1.38	0.92	3.37	4.2	0.0	2.11	2.21	1.25
Merged-chr8-39636180-2	chr8	39635656	39636656	+	831.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	6522.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	38.33	40.55	20.35	48.58	41.99	52.25	49.64	46.87	30.6
Merged-chr2-45116050-5	chr2	45115449	45116449	+	831.6400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355288, intron 1 of 10)	intron (NM_001355288, intron 1 of 10)	1493.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	149.31	233.16	150.77	145.74	167.48	142.27	175.33	215.34	146.14
Merged-chr2-127006816-3	chr2	127006305	127007305	+	831.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	40.62	55.75	24.05	51.28	61.58	32.96	57.03	75.17	44.97
Merged-chr18-11941343-3	chr18	11940859	11941859	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001146287, exon 9 of 10)	exon (NM_001146287, exon 9 of 10)	-100921.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	14.3	9.22	3.7	37.11	34.52	24.11	13.73	9.73	3.12
Merged-chrX-73984795-3	chrX	73984312	73985312	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18455.0	NM_008224	15161.0	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	5.15	3.23	3.7	10.12	0.47	3.22	4.22	2.65	5.0
Merged-chr1-34468437-4	chr1	34467933	34468933	+	831.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 6 of 14)	intron (NM_011206, intron 6 of 14)	8687.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	60.07	67.27	38.85	67.47	37.79	33.76	41.19	63.67	36.85
Merged-chr8-61665175-3	chr8	61664659	61665659	+	831.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73990.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	34.9	22.12	23.12	23.62	35.92	22.51	11.62	17.69	16.24
Merged-chr2-4551444-5	chr2	4550928	4551928	+	831.580017	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	MTEa|LTR|ERVL-MaLR	-8326.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	61.78	66.81	73.07	64.77	65.78	81.18	65.48	81.8	61.2
Merged-chr19-42795100-3	chr19	42794572	42795572	+	831.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081257, intron 11 of 11)	intron (NM_001081257, intron 11 of 11)	-15094.0	NM_019424	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	3.43	5.07	0.92	3.37	1.87	4.82	1.06	3.1	2.5
Merged-chr19-4212940-3	chr19	4212447	4213447	+	831.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1291.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	43.48	38.71	47.17	51.28	39.19	50.64	26.4	27.86	26.85
Merged-chr10-97389772-1	chr10	97389272	97390272	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33706.0	NR_039547	100628616.0		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	5.72	3.23	1.85	8.77	5.13	7.23	0.0	1.77	3.12
Merged-chr10-17178073-2	chr10	17177561	17178561	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82279.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	11.44	18.43	12.02	2.7	16.33	16.88	20.07	14.59	16.24
Merged-chr6-86641866-1	chr6	86641366	86642366	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13692.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	67.5	63.13	28.67	9.45	8.4	3.22	7.39	5.75	6.25
Merged-chr16-77041746-3	chr16	77041246	77042246	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 3 of 23)	intron (NM_013918, intron 3 of 23)	27677.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	8.58	4.15	7.4	8.77	6.53	8.04	5.28	7.52	5.0
Merged-chr3-27677738-3	chr3	27677244	27678244	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	32708.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	26.31	27.65	21.27	58.03	36.85	31.35	35.91	33.6	20.61
Merged-chr4-30959040-1	chr4	30958540	30959540	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	294444.0	NR_040655	75332.0	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	1.14	1.84	5.55	2.7	6.06	10.45	4.22	1.33	6.25
Merged-chr6-6230504-1	chr6	6230004	6231004	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13331.0	NM_001177572	50799.0	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	1.72	2.76	3.7	2.02	4.67	3.22	0.0	1.77	3.75
Merged-chr14-17746647-1	chr14	17746147	17747147	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	L1MB8|LINE|L1	85687.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	8.58	7.37	1.85	4.05	4.67	11.25	7.39	2.65	0.0
Merged-chr18-80277067-1	chr18	80276567	80277567	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025861, intron 4 of 5)	PB1D10|SINE|Alu	20761.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	8.01	6.45	14.8	12.14	7.93	9.65	4.22	1.33	14.99
Merged-chr1-153981020-2	chr1	153980501	153981501	+	831.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81072.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	10.87	3.69	11.1	7.42	2.33	6.43	2.11	5.31	0.0
Merged-chr19-43527359-2	chr19	43526848	43527848	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	9.72	7.83	5.55	8.77	4.2	9.65	8.45	7.07	6.25
Merged-chr5-114979196-1	chr5	114978696	114979696	+	831.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-8134.0	NM_009327	21405.0	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	4.0	3.69	3.7	7.42	2.33	5.63	7.39	3.54	3.75
Merged-chr18-80373098-3	chr18	80372589	80373589	+	831.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8835.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	6.29	9.22	3.7	9.45	3.73	11.25	9.51	3.1	0.0
Merged-chr18-69196946-3	chr18	69196442	69197442	+	831.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147550.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.58	5.53	3.7	4.05	4.2	0.8	1.06	0.88	2.5
Merged-chr6-87914633-2	chr6	87914132	87915132	+	831.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173737, exon 2 of 7)	exon (NM_173737, exon 2 of 7)	656.0	NM_173737	232210.0	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	152.17	145.61	84.17	188.92	184.74	114.94	128.85	116.29	73.69
Merged-chr10-95210881-2	chr10	95210364	95211364	+	831.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-65039.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	11.44	10.14	14.8	20.24	13.06	34.56	17.96	12.38	9.37
Merged-chr10-93257482-2	chr10	93256976	93257976	+	831.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	53683.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	37.76	27.65	56.42	49.93	28.92	49.83	49.64	26.97	17.49
Merged-chr9-105139398-3	chr9	105138910	105139910	+	831.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5672.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	5.15	15.21	9.25	9.45	11.2	8.04	7.39	3.54	6.25
Merged-chr4-132483173-2	chr4	132482675	132483675	+	831.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19254.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	37.18	29.03	28.67	45.88	38.72	34.56	29.57	24.32	22.48
Merged-chr7-127750713-2	chr7	127750207	127751207	+	831.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 5 of 10)	intron (NM_172748, intron 5 of 10)	3932.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.0	1.38	1.85	2.02	2.33	10.45	4.22	0.88	14.99
Merged-chr11-77446790-3	chr11	77446348	77447348	+	831.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-17065.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	14.87	12.44	6.47	16.19	18.19	12.06	23.24	11.94	8.74
Merged-chr5-29895130-3	chr5	29894627	29895627	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117987.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	12.01	7.37	7.4	1.35	4.67	14.47	13.73	6.19	6.87
Merged-chr11-74981593-3	chr11	74981036	74982036	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 8 of 18)	intron (NM_001002764, intron 8 of 18)	55664.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	8.58	10.14	16.65	13.49	9.8	7.23	8.45	6.19	3.12
Merged-chr4-19892357-3	chr4	19891852	19892852	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	30214.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	33.75	30.87	37.0	37.78	18.66	36.17	20.07	30.07	38.72
Merged-chr2-70889217-3	chr2	70888706	70889706	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-63726.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	9.72	5.99	14.8	13.49	13.06	12.06	14.79	26.53	18.74
Merged-chr4-56685372-3	chr4	56684861	56685861	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56064.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	2.86	1.84	4.62	4.05	0.47	1.61	2.11	0.88	4.37
Merged-chr19-32985215-3	chr19	32984744	32985744	+	831.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171868.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	11.44	13.36	12.95	12.82	4.67	3.22	15.84	14.15	28.1
Merged-chr4-109143565-1	chr4	109143065	109144065	+	831.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-5652.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	29.75	35.94	49.02	61.4	50.38	53.85	31.69	23.43	18.11
Merged-chr11-87074124-3	chr11	87073624	87074624	+	831.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025638)	promoter-TSS (NM_025638)	13.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	21.17	16.13	3.7	41.83	38.72	45.82	39.08	21.22	13.12
Merged-chr3-87619268-3	chr3	87618762	87619762	+	831.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360197, intron 1 of 38)	intron (NM_001360197, intron 1 of 38)	1703.0	NM_001360195	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	126.42	114.74	77.7	109.98	97.03	93.24	36.97	38.47	26.85
Merged-chr5-65986997-3	chr5	65986495	65987495	+	831.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_027961)	TTS (NR_027961)	17290.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	18.88	22.58	24.97	23.62	23.33	27.33	19.01	26.53	13.74
Merged-chr17-23739515-3	chr17	23739003	23740003	+	831.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023824, intron 1 of 2)	intron (NM_023824, intron 1 of 2)	827.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	17.73	13.82	12.95	8.77	6.53	19.29	11.62	3.54	10.62
Merged-chr4-135960897-1	chr4	135960397	135961397	+	831.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008254, exon 8 of 9)	exon (NM_008254, exon 8 of 9)	-2828.0	NM_001356493	74246.0	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	4.0	4.15	14.8	10.12	2.8	4.02	1.06	6.19	6.25
Merged-chr9-95564393-3	chr9	95563883	95564883	+	831.244446	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4566.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	92.1	129.02	85.1	122.12	116.63	123.78	152.09	189.25	89.93
Merged-chr6-54285157-3	chr6	54284663	54285663	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	intron (NM_001163640, intron 7 of 12)	12341.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	69.79	93.08	40.7	97.16	73.24	62.7	58.09	81.36	32.48
Merged-chr1-150165853-3	chr1	150165357	150166357	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110420)	promoter-TSS (NR_110420)	-909.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	17.73	12.9	7.4	17.54	11.66	5.63	17.96	16.8	3.75
Merged-chr11-32620177-3	chr11	32619681	32620681	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 18 of 18)	intron (NM_009288, intron 18 of 18)	-22374.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	8.58	11.52	3.7	12.82	6.06	6.43	14.79	15.03	8.12
Merged-chr4-125065689-3	chr4	125065158	125066158	+	831.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175223)	promoter-TSS (NM_175223)	-1.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	21.74	33.64	22.2	24.96	24.72	28.13	17.96	18.13	13.12
Merged-chr6-130954364-3	chr6	130953830	130954830	+	831.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	293032.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	36.61	22.58	10.17	15.52	24.72	20.9	4.22	5.31	8.74
Merged-chr10-39258479-3	chr10	39258004	39259004	+	831.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-94710.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	12.59	19.35	15.72	22.94	15.86	11.25	9.51	6.19	8.12
Merged-chr16-33937062-3	chr16	33936563	33937563	+	831.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29975.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	13.16	21.2	16.65	29.01	27.52	30.54	28.52	23.43	20.61
Merged-chr6-39275273-2	chr6	39274745	39275745	+	831.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-68472.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	8.01	6.45	16.65	15.52	19.13	29.74	20.07	10.17	3.75
Merged-chr3-105800767-2	chr3	105800308	105801308	+	831.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	CpG	573.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	215.09	193.07	212.74	186.9	137.15	157.54	273.55	177.75	138.02
Merged-chr12-25094731-6	chr12	25094174	25095174	+	831.163513	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010496, intron 2 of 2)	intron (NM_010496, intron 2 of 2)	1418.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	326.64	425.76	170.19	217.26	362.94	125.39	178.5	221.08	106.79
Merged-chr19-24265214-3	chr19	24264723	24265723	+	831.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008044, intron 4 of 4)	B3A|SINE|B2	15363.0	NM_008044	14297.0	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.29	2.76	1.85	4.05	0.0	0.8	1.06	0.88	6.25
Merged-chr5-114315243-2	chr5	114314748	114315748	+	831.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164573, intron 1 of 30)	intron (NM_001164573, intron 1 of 30)	307.0	NM_001164573	231646.0	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	5.72	3.69	3.7	4.72	3.27	3.22	3.17	3.54	0.0
Merged-chr15-58888176-3	chr15	58887679	58888679	+	831.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1050.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	132.14	168.19	153.54	128.2	131.56	130.21	121.46	171.56	121.78
Merged-chr13-63258365-3	chr13	63257864	63258864	+	831.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18335.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	25.17	25.8	26.82	27.66	29.86	19.29	31.69	20.34	19.98
Merged-chr10-59265318-2	chr10	59264821	59265821	+	831.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43399.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	94.39	163.12	79.55	93.79	100.3	94.04	137.3	156.97	84.31
Merged-chr1-58618431-3	chr1	58617924	58618924	+	831.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32027.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	18.88	23.5	18.5	15.52	27.99	24.92	27.46	24.76	41.22
Merged-chr1-128832722-3	chr1	128832185	128833185	+	831.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAG)n|Simple_repeat|Simple_repeat	-240386.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	15.45	3.23	0.92	11.47	6.06	2.41	4.22	4.42	3.75
Merged-chr11-32561659-3	chr11	32561186	32562186	+	831.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	28420.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	53.2	44.7	42.55	83.66	48.05	56.27	73.93	58.37	44.34
Merged-chr7-99149246-3	chr7	99148732	99149732	+	831.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8088.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	18.88	13.82	9.25	17.54	6.06	17.68	21.12	18.57	15.61
Merged-chr1-120170495-2	chr1	120169997	120170997	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172074, intron 4 of 4)	intron (NM_001172074, intron 4 of 4)	49310.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	2.29	4.61	0.0	5.4	6.53	3.22	6.34	3.1	2.5
Merged-chr3-59206132-1	chr3	59205632	59206632	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	4750.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	191.64	243.29	181.29	217.93	188.0	160.76	183.78	217.99	123.66
Merged-chr5-24602677-1	chr5	24602177	24603177	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-675.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	5.72	8.29	0.0	12.82	14.93	22.51	6.34	3.54	9.37
Merged-chr2-79349293-1	chr2	79348793	79349793	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 5 of 12)	L1_Mur3|LINE|L1	79695.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	4.58	5.53	0.0	7.42	2.33	6.43	1.06	8.4	7.49
Merged-chr11-48826184-2	chr11	48825677	48826677	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053166)	promoter-TSS (NM_053166)	39.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	10.87	13.36	20.35	29.01	34.06	77.97	8.45	6.63	8.12
Merged-chrX-37091671-1	chrX	37091171	37092171	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026573)	TTS (NM_026573)	-6449.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	9.72	5.07	14.8	5.4	9.8	4.82	5.28	9.29	6.87
Merged-chr4-32010993-1	chr4	32010493	32011493	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009316, intron 14 of 16)	intron (NM_009316, intron 14 of 16)	46886.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	10.3	11.52	3.7	22.27	18.19	20.09	22.18	10.61	12.49
Merged-chr8-85024554-2	chr8	85024068	85025068	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019652, intron 1 of 6)	intron (NM_019652, intron 1 of 6)	719.0	NM_001357203	56495.0	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	82.95	74.65	19.42	72.87	73.24	53.05	82.38	72.52	24.98
Merged-chr1-152529508-1	chr1	152529008	152530008	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95709.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	199.65	176.02	163.72	174.75	115.23	125.39	185.89	167.58	107.42
Merged-chr6-115909245-1	chr6	115908745	115909745	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-22682.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	6.29	5.53	5.55	10.8	3.27	3.22	3.17	6.63	6.25
Merged-chr14-70817448-1	chr14	70816948	70817948	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-35485.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	13.73	16.59	20.35	16.87	11.2	18.49	17.96	14.15	9.99
Merged-chr9-70848613-1	chr9	70848113	70849113	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	86195.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	19.45	26.26	24.05	40.48	21.46	37.78	24.29	28.74	26.85
Merged-chr15-12356126-1	chr15	12355626	12356626	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081064)	TTS (NM_001081064)	34630.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	2.29	5.07	6.47	10.12	6.53	8.04	1.06	2.21	7.49
Merged-chr16-65664914-1	chr16	65664414	65665414	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-102217.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	1.14	1.84	3.7	5.4	3.73	1.61	2.11	2.21	0.0
Merged-chr19-6036340-2	chr19	6035844	6036844	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10232.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	4.0	3.23	1.85	6.75	2.8	8.04	7.39	3.98	2.5
Merged-chrUn_JH584304-12347-1	chrUn_JH584304	11847	12847	+	831.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	47342.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	36.97	18.57	0.0
Merged-chr5-140110482-3	chr5	140109918	140110918	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	intron (NM_001359025, intron 14 of 17)	64500.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	44.05	71.42	53.65	61.4	90.04	77.97	58.09	45.99	44.97
Merged-chr9-89293528-1	chr9	89293028	89294028	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	82144.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	1.72	2.3	1.85	8.77	2.8	8.04	2.11	4.42	3.75
Merged-chr5-125380521-1	chr5	125380021	125381021	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	9496.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	26.31	10.14	22.2	8.77	8.86	18.49	8.45	7.52	6.25
Merged-chr13-67723990-1	chr13	67723490	67724490	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	5183.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	69.79	107.82	70.3	98.51	121.29	121.37	152.09	165.37	54.33
Merged-chr3-19310886-1	chr3	19310386	19311386	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001122759, exon 1 of 13)	exon (NM_001122759, exon 1 of 13)	436.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	111.55	70.5	86.02	93.11	48.98	89.22	96.11	76.49	47.46
Merged-chr18-4171901-1	chr18	4171401	4172401	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	6069.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	6.29	2.76	7.4	3.37	2.33	1.61	6.34	3.54	2.5
Merged-chr3-51415378-2	chr3	51414919	51415919	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053089)	promoter-TSS (NM_053089)	-597.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	156.74	170.49	87.87	124.82	110.1	118.16	161.6	141.05	105.55
Merged-chr3-9466426-1	chr3	9465926	9466926	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 4 of 8)	intron (NM_133218, intron 4 of 8)	63348.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.0	5.53	3.7	5.4	0.0	0.0	2.11	1.77	2.5
Merged-chr14-40975336-3	chr14	40974798	40975798	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8402.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	8.01	0.92	1.85	4.05	2.8	3.22	4.22	0.44	0.0
Merged-chr19-36833564-1	chr19	36833064	36834064	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163635)	promoter-TSS (NM_001163635)	-668.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	85.24	106.9	54.57	95.14	101.23	102.08	136.25	143.7	68.07
Merged-chr3-15959094-2	chr3	15958594	15959594	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 3 of 3)	intron (NM_001081687, intron 3 of 3)	47238.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	23.45	29.03	19.42	30.36	27.52	39.39	6.34	4.42	1.25
Merged-chr10-111770131-1	chr10	111769631	111770631	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	104245.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	5.72	5.53	1.85	6.07	5.13	3.22	6.34	5.31	3.12
Merged-chr18-61122801-1	chr18	61122301	61123301	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	Lx8|LINE|L1	5333.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	32.04	30.41	49.02	23.62	24.72	57.87	31.69	30.95	29.35
Merged-chr16-33685487-2	chr16	33685046	33686046	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	1080.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	64.64	102.29	86.95	72.87	53.65	80.38	97.17	88.88	56.83
Merged-chr7-30431973-3	chr7	30431466	30432466	+	831.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	8691.0	NM_172142	243910.0	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	I-kappa-B-delta|IkappaBNS|ikB-delta	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	8.58	9.22	3.7	12.82	5.6	14.47	8.45	6.19	5.0
Merged-chr9-22531347-1	chr9	22530847	22531847	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	MTEa|LTR|ERVL-MaLR	55632.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	11.44	1.84	22.2	5.4	7.0	9.65	8.45	0.88	3.12
Merged-chr9-32466727-1	chr9	32466227	32467227	+	831.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	72742.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	12.01	7.83	14.8	9.45	7.93	6.43	1.06	1.77	7.49
Merged-chr7-6940981-3	chr7	6940505	6941505	+	830.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	35657.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	4.0	2.76	0.0	4.05	3.73	0.8	1.06	0.88	2.5
Merged-chr13-81208214-3	chr13	81207706	81208706	+	830.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	244132.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	22.31	30.87	33.3	18.22	24.72	31.35	19.01	19.46	26.23
Merged-chr10-51405354-2	chr10	51404868	51405868	+	830.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75244.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	8.58	13.36	0.0	6.07	5.6	0.0	9.51	6.19	7.49
Merged-chr17-24745742-3	chr17	24745241	24746241	+	830.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7247.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	8.01	1.84	3.7	2.7	0.47	6.43	3.17	3.1	1.25
Merged-chr7-123240295-2	chr7	123239783	123240783	+	830.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146198, intron 5 of 16)	intron (NM_146198, intron 5 of 16)	25417.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	16.59	17.05	11.1	11.47	22.39	32.15	14.79	14.15	26.85
Merged-chr7-35076714-3	chr7	35076207	35077207	+	830.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20141.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	27.46	26.26	17.57	26.99	28.46	30.54	24.29	19.01	19.98
Merged-chr5-123508411-3	chr5	123507943	123508943	+	830.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289822)	TTS (NM_001289822)	-2017.0	NM_198611	231727.0	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	4.58	1.84	0.0	9.45	2.33	5.63	5.28	3.1	1.87
Merged-chr3-133543260-3	chr3	133542763	133543763	+	830.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	1127.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	86.95	96.76	59.2	107.28	102.63	81.18	121.46	126.46	64.33
Merged-chr10-19669101-2	chr10	19668597	19669597	+	830.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43490.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	6.86	11.06	3.7	11.47	5.13	9.65	3.17	5.31	6.25
Merged-chr16-70329284-2	chr16	70328800	70329800	+	830.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	intron (NM_028803, intron 1 of 15)	15351.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	34.32	35.94	29.6	36.43	37.79	25.72	116.18	145.47	61.83
Merged-chr10-127937087-3	chr10	127936560	127937560	+	830.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	38525.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	42.33	40.55	25.9	43.18	27.06	34.56	29.57	38.91	23.73
Merged-chr9-109985609-3	chr9	109985123	109986123	+	830.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 2 of 17)	intron (NM_001205332, intron 2 of 17)	53849.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	2.86	1.84	1.85	8.1	3.27	8.04	1.06	0.88	2.5
Merged-chr10-96342683-3	chr10	96342188	96343188	+	830.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116481.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	26.31	21.66	5.55	19.57	7.46	15.27	36.97	25.2	5.62
Merged-chr12-102692733-3	chr12	102692242	102693242	+	830.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-7722.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	24.03	42.85	48.1	16.19	17.73	28.94	19.01	20.78	21.23
Merged-chr6-122820601-4	chr6	122820096	122821096	+	830.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021899, exon 1 of 11)	5' UTR (NM_021899, exon 1 of 11)	412.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	177.91	132.71	100.82	126.17	122.69	81.99	172.16	149.01	87.43
Merged-chr9-111081033-3	chr9	111080517	111081517	+	830.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23499.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	5.15	3.69	5.55	14.84	3.27	4.82	3.17	6.19	3.75
Merged-chr4-101185468-3	chr4	101184969	101185969	+	830.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 4 of 24)	intron (NM_146145, intron 4 of 24)	79813.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	50.91	58.98	60.12	55.33	58.31	68.32	60.2	57.48	51.21
Merged-chr2-132107789-3	chr2	132107284	132108284	+	830.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	37324.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	130.43	113.35	129.49	136.29	118.96	90.83	136.25	157.85	69.95
Merged-chr15-58818707-2	chr15	58818216	58819216	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	MLT1H1|LTR|ERVL-MaLR	4711.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	116.13	135.93	81.4	155.19	132.49	69.93	94.0	98.16	46.22
Merged-chr12-85575636-2	chr12	85575131	85576131	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23474.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	29.75	20.27	22.2	23.62	16.79	27.33	25.35	27.41	28.73
Merged-chrX-98890530-2	chrX	98890027	98891027	+	830.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_052976, exon 1 of 25)	5' UTR (NM_052976, exon 1 of 25)	498.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	17.16	10.6	6.47	22.94	23.33	24.92	21.12	21.67	22.48
Merged-chr5-143270032-3	chr5	143269524	143270524	+	830.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017467)	promoter-TSS (NM_017467)	-2.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	28.03	11.06	20.35	30.36	19.13	27.33	22.18	12.82	9.99
Merged-chr5-115530676-3	chr5	115530163	115531163	+	830.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	23987.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	50.34	59.9	64.75	64.77	59.25	86.81	73.93	63.23	41.22
Merged-chr11-114987874-1	chr11	114987374	114988374	+	830.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145437, intron 1 of 3)	intron (NM_145437, intron 1 of 3)	2012.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	7.44	2.76	5.55	99.18	58.78	103.69	110.9	103.02	62.45
Merged-chr7-4836462-2	chr7	4835975	4836975	+	830.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172737, exon 2 of 6)	exon (NM_172737, exon 2 of 6)	8221.0	NM_001290291	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	2.29	0.92	3.7	4.05	0.93	1.61	6.34	1.33	0.0
Merged-chr11-20561437-1	chr11	20560937	20561937	+	830.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	18184.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.15	4.15	1.85	4.05	4.2	3.22	0.0	3.98	7.49
Merged-chr4-102534201-3	chr4	102533689	102534689	+	830.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-35871.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	34.9	40.55	35.15	0.0	0.0	0.0	16.9	16.8	19.98
Merged-chr5-97061681-3	chr5	97061169	97062169	+	830.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 11 of 15)	intron (NM_080708, intron 11 of 15)	49927.0	NM_001359910	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	27.46	18.89	8.32	35.76	20.06	29.74	34.85	45.54	31.85
Merged-chr8-117328914-1	chr8	117328414	117329414	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-20256.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	20.02	8.75	9.25	17.54	9.8	10.45	9.51	3.54	9.99
Merged-chr3-84921969-2	chr3	84921514	84922514	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-30197.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.58	14.28	12.95	9.45	16.79	17.68	13.73	11.94	7.49
Merged-chr1-33813355-2	chr1	33812861	33813861	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359274, intron 2 of 13)	intron (NM_001359274, intron 2 of 13)	1234.0	NM_133817	98403.0	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	35.47	23.04	13.87	30.36	26.12	4.82	22.18	14.15	11.24
Merged-chr12-73765271-1	chr12	73764771	73765771	+	830.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 12 of 13)	intron (NM_008856, intron 12 of 13)	-136053.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	2.29	1.84	3.7	9.45	6.53	16.08	7.39	4.86	9.37
Merged-chr2-91089261-3	chr2	91088754	91089754	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7424.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	98.97	99.99	117.47	127.52	90.04	139.06	118.29	113.19	91.18
Merged-chr18-35117034-3	chr18	35116566	35117566	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1846.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	10.3	10.6	9.25	10.8	6.53	2.41	11.62	5.75	5.0
Merged-chr2-94144807-3	chr2	94144251	94145251	+	830.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	13158.0	NM_019657	56348.0	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	61.78	93.54	49.02	104.58	119.89	92.44	119.35	116.73	69.95
Merged-chr6-129369920-3	chr6	129369439	129370439	+	830.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15564.0	NM_027709	71183.0	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	66.36	53.91	55.5	48.58	41.99	61.09	59.15	40.24	38.72
Merged-chr1-179845052-3	chr1	179844550	179845550	+	830.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41035.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	1.14	3.69	0.0	4.05	3.27	0.0	2.11	2.65	2.5
Merged-chr8-14608070-2	chr8	14607581	14608581	+	830.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280455.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	9.15	7.37	1.85	27.66	14.46	12.86	6.34	0.88	3.75
Merged-chr2-161108540-3	chr2	161108058	161109058	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126509, intron 1 of 35)	CpG	528.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	68.07	52.53	58.27	82.32	51.78	65.91	79.21	33.16	36.85
Merged-chr15-57693176-3	chr15	57692689	57693689	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	42.33	37.78	18.5	49.93	22.86	26.53	31.69	17.24	11.24
Merged-chr9-70943609-1	chr9	70943109	70944109	+	830.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324472, intron 1 of 9)	MTE2a|LTR|ERVL-MaLR	8612.0	NM_001324472	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	27.46	20.27	33.3	60.72	35.92	59.48	36.97	22.55	29.98
Merged-chr19-34193337-3	chr19	34192800	34193800	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001360717, exon 1 of 12)	5' UTR (NM_001360717, exon 1 of 12)	366.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	206.51	226.25	104.52	162.61	196.87	146.29	350.65	415.64	130.53
Merged-chr14-114946541-3	chr14	114946048	114947048	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126548)	promoter-TSS (NR_126548)	-600.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	5.15	5.53	4.62	12.82	6.06	12.86	1.06	4.42	7.49
Merged-chr14-30579937-1	chr14	30579437	30580437	+	830.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	7788.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	22.31	9.68	9.25	19.57	14.0	9.65	174.27	232.14	97.43
Merged-chr17-73302228-3	chr17	73301719	73302719	+	830.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97077.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	5.15	2.76	3.7	10.12	0.93	1.61	5.28	3.98	6.25
Merged-chr6-145863230-1	chr6	145862730	145863730	+	830.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024469, exon 5 of 5)	exon (NM_024469, exon 5 of 5)	2190.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	7.44	3.69	3.7	26.99	19.59	14.47	3.17	1.33	3.12
Merged-chr2-162998686-2	chr2	162998214	162999214	+	830.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291154, intron 9 of 12)	intron (NM_001291154, intron 9 of 12)	7299.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	4.0	4.15	7.4	2.7	3.73	0.0	4.22	0.44	2.5
Merged-chr9-47716338-2	chr9	47715837	47716837	+	830.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	101871.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	16.59	15.21	12.02	45.88	49.45	27.33	16.9	16.36	13.12
Merged-chr11-69754832-3	chr11	69754361	69755361	+	830.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291068, intron 1 of 28)	MER119|DNA|hAT-Charlie	3772.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	19.45	15.21	11.1	24.96	8.86	8.04	26.4	26.09	6.25
Merged-chr7-24905148-2	chr7	24904657	24905657	+	830.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130152, intron 1 of 28)	intron (NM_001130152, intron 1 of 28)	811.0	NM_001130152	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	12.01	13.36	16.65	10.12	7.93	4.02	17.96	9.73	9.37
Merged-chr3-121370599-3	chr3	121370074	121371074	+	830.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55967.0	NM_028044	71994.0	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	17.16	12.44	11.1	22.27	26.12	20.9	43.3	38.03	13.12
Merged-chr6-51509452-3	chr6	51508960	51509960	+	830.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14443.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	16.59	4.61	3.7	4.05	7.93	4.82	14.79	15.92	8.74
Merged-chr1-144239348-3	chr1	144238852	144239852	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	9752.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.58	2.76	1.85	2.02	2.33	6.43	2.11	0.88	1.25
Merged-chr12-73593552-3	chr12	73593057	73594057	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	8761.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	22.88	22.12	27.75	26.31	22.86	23.31	23.24	15.48	17.49
Merged-chr11-104549759-3	chr11	104549247	104550247	+	830.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010858)	promoter-TSS (NM_010858)	873.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	296.9	494.42	217.36	284.06	449.25	282.93	312.63	405.03	193.6
Merged-chr17-37197262-2	chr17	37196767	37197767	+	830.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001011518, exon 1 of 1)	exon (NM_001011518, exon 1 of 1)	699.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	5.72	0.0	1.85	3.37	0.47	3.22	1.06	1.77	1.25
Merged-chr4-142095751-3	chr4	142095248	142096248	+	830.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11444.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	74.37	98.61	86.95	122.12	104.96	90.83	70.76	63.67	21.86
Merged-chr11-118242869-2	chr11	118242337	118243337	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	5755.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	35.47	46.08	45.32	40.48	38.72	25.72	39.08	34.93	28.1
Merged-chr2-45277780-3	chr2	45277279	45278279	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160337.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	90.38	109.67	54.57	101.88	82.57	130.21	98.23	105.24	51.84
Merged-chr4-111886257-1	chr4	111885757	111886757	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16539.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.0	1.38	3.7	0.67	1.87	4.82	1.06	3.1	5.0
Merged-chr19-42158013-2	chr19	42157495	42158495	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10606.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	10.87	11.98	16.65	16.19	11.66	7.23	3.17	3.98	9.37
Merged-chr9-22092778-2	chr9	22092269	22093269	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6484.0	NM_009922	12797.0	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	9.72	7.37	2.77	10.12	6.53	2.41	31.69	12.38	5.62
Merged-chr14-19722172-1	chr14	19721672	19722672	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29085.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	9.15	10.14	6.47	8.77	5.6	6.43	8.45	8.84	8.12
Merged-chr13-114071635-2	chr13	114071138	114072138	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	79954.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	4.0	1.84	2.77	4.72	5.13	6.43	3.17	5.75	2.5
Merged-chr8-46617957-3	chr8	46617434	46618434	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151680)	promoter-TSS (NR_151680)	643.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	56.63	44.7	64.75	58.7	57.38	75.56	85.55	81.36	43.09
Merged-chr1-154117600-2	chr1	154117102	154118102	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83585.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	121.28	115.66	108.22	117.4	109.16	100.47	96.11	106.12	76.19
Merged-chr6-83636131-2	chr6	83635637	83636637	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	19979.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	126.42	124.87	113.77	130.9	134.82	167.99	163.71	172.89	97.43
Merged-chr2-122580666-1	chr2	122580166	122581166	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30611.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	38.33	36.86	11.1	50.6	43.85	37.78	25.35	20.34	21.23
Merged-chr2-27693828-1	chr2	27693328	27694328	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-15464.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	70.36	79.72	111.92	70.85	79.31	101.28	55.98	72.52	48.09
Merged-chr7-99124083-2	chr7	99123587	99124587	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	RLTR11A|LTR|ERVK	17057.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	7.44	5.99	6.47	8.77	7.46	7.23	20.07	10.17	14.99
Merged-chr13-112792151-3	chr13	112791651	112792651	+	830.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8626.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	6.29	6.45	1.85	7.42	3.27	6.43	17.96	11.05	1.25
Merged-chr6-134095830-1	chr6	134095330	134096330	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	MLT2D|LTR|ERVL	60130.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	8.01	11.06	3.7	6.75	7.46	4.82	12.67	6.19	9.99
Merged-chr7-67371588-2	chr7	67371087	67372087	+	830.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	1271.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	88.67	190.3	86.95	109.98	134.35	82.79	159.48	179.52	87.43
Merged-chrX-85803146-3	chrX	85802619	85803619	+	830.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23542.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	8.58	14.28	14.8	11.47	11.2	15.27	11.62	2.21	11.24
Merged-chr1-88576002-3	chr1	88575495	88576495	+	830.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24478.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	120.7	117.04	102.67	86.36	50.38	77.97	92.94	81.8	39.97
Merged-chr9-108990172-3	chr9	108989711	108990711	+	830.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_173019	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	32.04	22.12	31.45	24.29	23.33	53.85	20.07	18.57	21.23
Merged-chr6-86785034-3	chr6	86784566	86785566	+	830.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	8518.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	38.33	16.59	24.05	20.24	7.46	6.43	6.34	4.86	1.25
Merged-chr3-146607377-2	chr3	146606871	146607871	+	830.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009474, intron 1 of 7)	intron (NM_009474, intron 1 of 7)	8227.0	NM_019957	56629.0	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	4.58	1.84	1.85	5.4	3.27	4.82	5.28	3.98	1.87
Merged-chr2-154256304-2	chr2	154255805	154256805	+	830.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1574.0	NM_175167	71425.0	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	25.74	28.57	17.57	60.05	51.78	79.58	42.25	44.22	40.59
Merged-chr5-43737688-1	chr5	43737188	43738188	+	830.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 36 of 37)	intron (NM_001359906, intron 36 of 37)	44461.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	7.44	5.99	3.7	57.35	57.85	80.38	1.06	3.1	1.25
Merged-chr14-45663746-3	chr14	45663237	45664237	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5594.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	40.62	47.46	38.85	43.18	38.72	43.4	165.82	179.96	59.33
Merged-chr18-4971038-3	chr18	4970554	4971554	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75535.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	7.44	5.53	11.1	8.1	2.8	1.61	5.28	3.1	4.37
Merged-chr13-9113946-3	chr13	9113442	9114442	+	830.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	20061.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	44.05	28.11	27.75	40.48	24.26	19.29	36.97	32.28	26.85
Merged-chr11-109344178-2	chr11	109343680	109344680	+	830.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2687.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	2.86	3.23	1.85	8.77	3.27	4.82	6.34	1.77	0.0
Merged-chr2-68796690-2	chr2	68796192	68797192	+	830.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64749.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	26.31	18.43	22.2	22.94	22.86	33.76	19.01	15.48	24.36
Merged-chr1-149946676-2	chr1	149946184	149947184	+	830.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	14606.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	69.79	59.9	50.87	75.57	64.84	67.52	57.03	57.48	66.2
Merged-chr10-37222035-2	chr10	37221534	37222534	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83108.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	13.16	15.67	11.1	16.87	13.53	24.11	11.62	18.57	5.62
Merged-chr7-43895010-3	chr7	43894503	43895503	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	13831.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	6.29	0.92	0.0	0.67	0.0	1.61	1.06	0.0	2.5
Merged-chr11-84442767-1	chr11	84442267	84443267	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019816, intron 11 of 12)	intron (NM_019816, intron 11 of 12)	70734.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	6.86	2.76	0.92	72.19	41.99	35.37	15.84	15.92	8.74
Merged-chr5-66128983-1	chr5	66128483	66129483	+	830.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	Lx9|LINE|L1	21995.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	8.58	7.83	10.17	17.54	5.13	16.88	14.79	18.13	16.24
Merged-chr14-51095847-3	chr14	51095353	51096353	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007447)	promoter-TSS (NM_007447)	-147.0	NM_007447	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	14.3	11.98	16.65	12.82	14.93	16.88	6.34	11.94	3.75
Merged-chr17-10743702-1	chr17	10743202	10744202	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96489.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.0	6.91	8.32	12.82	16.33	19.29	10.56	9.29	8.12
Merged-chr4-135313014-1	chr4	135312514	135313514	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40200.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	135.0	82.94	74.92	58.03	35.45	32.15	36.97	32.28	14.36
Merged-chr18-36482672-3	chr18	36482162	36483162	+	830.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28167.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	54.92	32.72	9.25	54.65	24.26	30.54	15.84	4.86	6.87
Merged-chr2-128748712-1	chr2	128748212	128749212	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	Charlie1|DNA|hAT-Charlie	49797.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	44.62	65.43	49.95	87.04	58.31	61.09	63.37	79.59	31.85
Merged-chr5-113648065-1	chr5	113647565	113648565	+	830.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	B4|SINE|B4	2325.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	177.91	183.39	111.92	228.05	212.73	203.36	273.55	275.03	124.91
Merged-chrX-134612686-3	chrX	134612197	134613197	+	830.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11518.0	NM_001313717	56258.0	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	9.15	9.68	12.95	18.89	19.13	11.25	21.12	10.17	8.12
Merged-chr8-81014099-4	chr8	81013618	81014618	+	830.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027554, exon 1 of 10)	exon (NM_027554, exon 1 of 10)	788.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	106.97	123.03	134.12	80.97	97.03	88.42	157.37	182.62	125.53
Merged-chr13-97208292-3	chr13	97207789	97208789	+	830.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9932.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	20.59	16.13	27.75	20.24	15.39	30.54	23.24	17.69	21.23
Merged-chr15-58418266-3	chr15	58417748	58418748	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	2780.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	6.86	15.21	9.25	12.82	12.6	14.47	13.73	22.99	11.24
Merged-chr2-23006425-3	chr2	23005903	23006903	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	Lx8|LINE|L1	33838.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	70.36	90.77	57.35	81.64	53.18	51.44	105.62	87.99	53.08
Merged-chr7-118488388-3	chr7	118487892	118488892	+	830.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	3583.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	36.61	36.86	49.02	53.98	42.92	44.21	113.01	89.76	61.83
Merged-chr1-164652442-2	chr1	164651939	164652939	+	830.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-144224.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	6.29	14.28	12.02	5.4	4.67	12.86	14.79	22.55	19.36
Merged-chr5-43185011-3	chr5	43184529	43185529	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028417, intron 5 of 7)	ORR1E|LTR|ERVL-MaLR	-48434.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	13.73	19.81	24.97	14.84	23.33	30.54	41.19	50.85	27.48
Merged-chr12-3906597-2	chr12	3906097	3907097	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 16 of 17)	intron (NM_153743, intron 16 of 17)	14853.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	25.74	24.88	32.37	30.36	32.66	31.35	28.52	16.36	23.11
Merged-chr18-68929608-2	chr18	68929108	68930108	+	830.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	21920.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	4.58	1.38	1.85	6.07	3.27	6.43	5.28	0.88	1.25
Merged-chr4-121009987-2	chr4	121009492	121010492	+	830.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	L2a|LINE|L2	7255.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	85.81	76.49	61.05	52.63	42.45	45.01	67.6	72.96	41.22
Merged-chr17-47515705-3	chr17	47515200	47516200	+	830.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	10649.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	6.86	2.76	3.7	6.07	4.2	3.22	7.39	4.42	0.62
Merged-chrX-107151297-3	chrX	107150807	107151807	+	830.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175442, intron 1 of 1)	intron (NM_175442, intron 1 of 1)	1692.0	NM_175442	213438.0	Mm.265244	NM_175442	ENSMUSG00000054293	P2ry10b	A630033H20Rik|AI662791|P2ry10	purinergic receptor P2Y, G-protein coupled 10B	protein-coding	102.97	144.23	66.6	99.86	106.83	76.36	94.0	142.38	69.32
Merged-chr7-24715238-3	chr7	24714753	24715753	+	830.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199150)	TTS (NM_199150)	5994.0	NM_199150	232972.0	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	9.15	4.15	5.55	4.72	2.8	11.25	2.11	0.0	1.25
Merged-chr13-39003592-3	chr13	39003087	39004087	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42712.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	6.86	10.14	7.4	5.4	3.27	4.82	4.22	3.54	2.5
Merged-chr6-82769923-3	chr6	82769439	82770439	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	4515.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	13.73	7.37	19.42	16.19	9.8	14.47	33.8	30.51	21.23
Merged-chr16-91021257-3	chr16	91020774	91021774	+	830.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152264, intron 15 of 17)	intron (NR_152264, intron 15 of 17)	-9966.0	NM_001164483	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	70.36	73.73	57.35	96.48	51.78	58.68	78.16	77.38	48.09
Merged-chr2-128715269-3	chr2	128714781	128715781	+	830.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	ID_B1|SINE|B4	16366.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	106.97	94.46	89.72	128.2	83.04	124.59	126.74	185.27	72.45
Merged-chr19-53802079-2	chr19	53801568	53802568	+	830.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-90163.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.58	6.45	1.85	5.4	3.27	1.61	8.45	4.42	2.5
Merged-chr5-36742586-2	chr5	36742078	36743078	+	830.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6101.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	14.87	9.22	8.32	14.17	11.66	6.43	16.9	10.61	8.74
Merged-chr4-130799126-5	chr4	130798641	130799641	+	830.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	6604.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	170.47	162.66	105.44	145.74	116.63	192.11	179.55	191.9	91.18
Merged-chr6-145277048-3	chr6	145276552	145277552	+	830.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26500.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	152.17	146.07	84.17	196.34	198.73	116.55	89.78	108.77	64.33
Merged-chr7-75551152-3	chr7	75550674	75551674	+	830.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	95640.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.29	3.23	0.0	1.35	0.93	1.61	2.11	2.65	10.62
Merged-chr1-134076661-6	chr1	134076148	134077148	+	830.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	2507.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	25.17	20.27	14.8	16.19	17.26	26.53	9.51	11.5	15.61
Merged-chr17-48167278-3	chr17	48166777	48167777	+	830.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113556)	promoter-TSS (NM_001113556)	-20.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	8.58	5.99	4.62	14.17	10.26	25.72	15.84	7.96	7.49
Merged-chr8-76988121-2	chr8	76987627	76988627	+	830.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 2 of 8)	Charlie4a|DNA|hAT-Charlie	85619.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	6.86	7.83	3.7	8.1	6.06	0.8	15.84	5.75	13.12
Merged-chr15-79342947-3	chr15	79342472	79343472	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3649.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	10.87	9.68	3.7	10.12	6.53	2.41	21.12	13.71	6.25
Merged-chr15-96588828-3	chr15	96588333	96589333	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 8 of 15)	intron (NM_001166456, intron 8 of 15)	53129.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	18.31	17.51	11.1	20.92	13.53	16.08	7.39	14.59	12.49
Merged-chr10-117682698-3	chr10	117682194	117683194	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 8 of 8)	B3|SINE|B2	28064.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	4.58	3.69	0.0	6.75	1.87	1.61	11.62	3.98	5.0
Merged-chr11-78189578-3	chr11	78189088	78190088	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033475, exon 2 of 10)	exon (NM_033475, exon 2 of 10)	840.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	22.88	10.6	4.62	22.94	9.33	11.25	29.57	9.29	5.0
Merged-chr11-116534435-3	chr11	116533963	116534963	+	830.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011451)	promoter-TSS (NM_011451)	-277.0	NM_011451	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.57	1.84	9.25	3.37	2.33	1.61	4.22	1.33	0.0
Merged-chr6-5165087-3	chr6	5164601	5165601	+	830.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	28845.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	19.45	24.42	25.9	29.69	23.79	38.58	19.01	22.11	12.49
Merged-chr5-134350887-3	chr5	134350380	134351380	+	830.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24426.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	3.43	2.3	6.47	4.72	3.27	0.0	6.34	7.96	3.75
Merged-chr19-37375082-1	chr19	37374582	37375582	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1321.0	NM_010615	16551.0	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	20.02	34.1	12.95	23.62	29.86	27.33	39.08	75.17	36.85
Merged-chr6-5233884-1	chr6	5233384	5234384	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 5 of 8)	intron (NM_173006, intron 5 of 8)	22349.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	2.29	1.84	3.7	6.07	4.2	8.84	2.11	3.98	9.99
Merged-chr18-13008174-1	chr18	13007674	13008674	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153087, intron 1 of 2)	intron (NM_153087, intron 1 of 2)	1184.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	20.02	29.95	23.12	23.62	22.86	14.47	21.12	19.9	12.49
Merged-chr10-84829230-1	chr10	84828730	84829730	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024918, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	-8918.0	NM_027689	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	5.72	3.69	5.55	4.05	3.27	3.22	5.28	3.1	3.75
Merged-chr2-129588167-2	chr2	129587664	129588664	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4675.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.59	15.67	12.95	22.27	10.26	7.23	15.84	3.98	5.0
Merged-chr10-80389386-2	chr10	80388887	80389887	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1736.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	11.44	8.75	7.4	8.1	3.73	16.08	14.79	9.29	15.61
Merged-chr12-110852181-1	chr12	110851681	110852681	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1902.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	20.59	14.28	24.97	30.36	22.86	23.31	31.69	30.95	16.24
Merged-chr6-145122943-2	chr6	145122443	145123443	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	1204.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	82.95	94.92	52.72	93.79	95.17	110.12	108.79	147.68	60.58
Merged-chr19-23038559-1	chr19	23038059	23039059	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102667.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.14	0.0	0.0	2.7	3.73	0.0	12.67	11.5	5.0
Merged-chr8-106936936-1	chr8	106936436	106937436	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	1186.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	16.59	17.05	13.87	33.06	19.13	25.72	12.67	8.84	17.49
Merged-chr4-123633960-2	chr4	123633466	123634466	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	17546.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	27.46	36.86	16.65	34.41	34.99	35.37	33.8	30.07	17.49
Merged-chr15-50803639-1	chr15	50803139	50804139	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	85410.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	13.16	16.13	14.8	14.84	12.6	14.47	14.79	7.52	13.12
Merged-chr13-45455801-2	chr13	45455336	45456336	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-51608.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	107.55	146.07	110.07	118.08	131.09	121.37	102.45	122.48	69.95
Merged-chr7-45102866-1	chr7	45102366	45103366	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357117, intron 2 of 6)	intron (NM_001357117, intron 2 of 6)	956.0	NM_001357117	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	33.75	31.33	51.8	28.34	32.19	53.05	33.8	38.47	21.86
Merged-chr12-71017007-1	chr12	71016507	71017507	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081195, intron 1 of 23)	intron (NM_001081195, intron 1 of 23)	1040.0	NM_001081195	238247.0	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	86.38	61.28	61.97	74.22	38.72	65.11	94.0	69.42	59.95
Merged-chr5-34105843-1	chr5	34105343	34106343	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181857, intron 13 of 24)	RMER19B|LTR|ERVK	-12897.0	NR_040703	75357.0	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	5.72	3.23	8.32	3.37	6.06	4.82	8.45	4.42	3.12
Merged-chr4-63590649-2	chr4	63590136	63591136	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	10128.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	40.62	46.08	22.2	35.09	34.99	30.54	31.69	29.63	26.85
Merged-chr3-144562212-1	chr3	144561712	144562712	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	L1MA8|LINE|L1	8004.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	26.31	15.67	17.57	23.62	13.53	12.06	13.73	24.32	13.12
Merged-chr15-98477907-1	chr15	98477407	98478407	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4776.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	7.44	4.15	7.4	10.12	6.53	0.8	3.17	6.19	6.25
Merged-chr19-34611591-1	chr19	34611091	34612091	+	830.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001005858, exon 2 of 2)	exon (NM_001005858, exon 2 of 2)	3634.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	12.01	2.76	0.0	4.72	2.33	4.82	4.22	10.17	3.75
Merged-chr7-127273228-1	chr7	127272728	127273728	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009266, exon 1 of 1)	exon (NM_009266, exon 1 of 1)	831.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	77.8	57.14	31.45	97.16	83.51	68.32	61.26	57.04	14.36
Merged-chr9-58270282-1	chr9	58269782	58270782	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	17118.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	56.63	46.54	18.5	71.52	59.71	33.76	102.45	73.84	40.59
Merged-chr15-76908296-1	chr15	76907796	76908796	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	4225.0	NM_012053	26961.0	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	4.58	3.69	3.7	7.42	4.2	13.66	2.11	0.88	5.0
Merged-chr16-55469291-1	chr16	55468791	55469791	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25440.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.57	3.69	0.0	2.7	1.4	0.0	2.11	3.1	3.75
Merged-chr1-88642976-3	chr1	88642481	88643481	+	830.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59210.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	16.59	15.67	9.25	19.57	10.26	9.65	17.96	19.9	8.74
Merged-chr18-52244175-1	chr18	52243675	52244675	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87361.0	NM_026286	67634.0	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	1.14	7.83	0.0	4.05	3.27	3.22	3.17	0.44	3.75
Merged-chr15-59056635-2	chr15	59056128	59057128	+	830.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 2 of 14)	intron (NM_144800, intron 2 of 14)	25398.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	7.44	6.91	6.47	19.57	14.0	11.25	7.39	10.61	6.87
Merged-chr2-6711260-3	chr2	6710764	6711764	+	829.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	L2|LINE|L2	10398.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	35.47	46.08	26.82	45.21	40.12	46.62	41.19	35.82	50.59
Merged-chr16-24487825-3	chr16	24487340	24488340	+	829.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	39749.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	9.15	4.61	3.7	12.14	9.8	4.82	9.51	4.42	6.25
Merged-chr1-144000477-5	chr1	143999959	144000959	+	829.960022	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009061, exon 5 of 5)	3' UTR (NM_009061, exon 5 of 5)	3690.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	56.06	39.63	36.07	31.71	23.33	29.74	28.52	33.16	33.72
Merged-chr10-8888383-3	chr10	8887880	8888880	+	829.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2310.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	14.3	5.99	9.25	12.82	5.6	11.25	9.51	3.1	1.25
Merged-chrX-85304936-2	chrX	85304445	85305445	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	55268.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	2.29	1.84	0.92	4.05	7.46	3.22	2.11	0.44	2.5
Merged-chr11-73084505-2	chr11	73084019	73085019	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025818)	TTS (NM_025818)	-6064.0	NM_001361245	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	6.29	8.75	20.35	25.64	13.06	16.88	4.22	8.84	5.0
Merged-chr15-98728097-2	chr15	98727580	98728580	+	829.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357893)	promoter-TSS (NM_001357893)	118.0	NM_024169	66120.0	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	9.72	3.69	1.85	8.77	3.73	1.61	8.45	3.98	3.75
Merged-chr11-117320604-3	chr11	117320093	117321093	+	829.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-11122.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	80.66	88.01	105.44	80.97	59.71	79.58	68.65	57.48	39.97
Merged-chr17-43075983-2	chr17	43075449	43076449	+	829.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	59394.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	54.35	62.21	59.2	62.75	44.32	81.18	20.07	17.24	13.74
Merged-chr12-87441451-3	chr12	87440967	87441967	+	829.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102565, intron 1 of 5)	intron (NM_001102565, intron 1 of 5)	2372.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	139.58	198.14	108.22	53.3	72.31	83.59	128.85	181.73	86.18
Merged-chr18-39553239-6	chr18	39552738	39553738	+	829.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65993.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	21.74	31.33	20.35	33.74	27.52	43.4	25.35	33.6	19.36
Merged-chr16-23231999-2	chr16	23231498	23232498	+	829.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	5977.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	28.6	29.49	37.92	53.98	34.99	39.39	46.47	35.82	24.36
Merged-chr14-73374487-3	chr14	73373984	73374984	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	intron (NM_008410, intron 1 of 5)	10805.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	24.03	26.73	14.8	30.36	27.06	43.4	30.63	37.14	33.1
Merged-chr4-3659448-3	chr4	3658948	3659948	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040643, intron 3 of 3)	intron (NR_040643, intron 3 of 3)	2942.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	85.81	99.53	67.52	120.1	103.1	61.09	132.02	134.86	86.18
Merged-chr11-90242586-1	chr11	90242086	90243086	+	829.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6890.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	11.44	10.6	4.62	24.29	17.26	19.29	11.62	5.75	4.37
Merged-chr17-46830160-3	chr17	46829633	46830633	+	829.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100452, intron 1 of 10)	intron (NM_001100452, intron 1 of 10)	1280.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	102.97	164.04	83.25	128.2	155.35	103.69	126.74	151.66	78.07
Merged-chr5-121833878-5	chr5	121833419	121834419	+	829.82666	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306127, intron 1 of 8)	intron (NM_001306127, intron 1 of 8)	2185.0	NM_001306126	16923.0	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	44.62	32.72	46.25	49.93	38.25	63.5	65.48	56.6	49.34
Merged-chr4-123283149-1	chr4	123282649	123283649	+	829.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356377, exon 1 of 14)	5' UTR (NM_001356377, exon 1 of 14)	238.0	NM_130881	230721.0	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	63.5	57.6	32.37	74.22	83.97	67.52	98.23	93.3	27.48
Merged-chr16-22353854-3	chr16	22353366	22354366	+	829.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58878.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	23.45	19.81	21.27	28.34	18.19	20.9	47.53	30.51	32.48
Merged-chr14-105142205-2	chr14	105141714	105142714	+	829.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 11 of 20)	MTC|LTR|ERVL-MaLR	-27538.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	4.58	5.53	5.55	4.05	2.33	6.43	30.63	27.41	24.98
Merged-chr4-6374007-2	chr4	6373463	6374463	+	829.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	8283.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	145.3	117.96	44.4	168.0	146.95	108.51	148.92	198.98	71.82
Merged-chr4-109546704-2	chr4	109546205	109547205	+	829.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15408.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	19.45	16.13	11.1	11.47	3.73	12.06	5.28	15.48	13.74
Merged-chr4-105748429-3	chr4	105747899	105748899	+	829.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-492814.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	18.31	18.89	15.72	26.99	19.59	19.29	17.96	15.92	11.87
Merged-chr11-95838825-3	chr11	95838330	95839330	+	829.722229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-3465.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	30.32	40.09	36.07	35.76	27.99	69.13	87.66	63.67	51.84
Merged-chr17-83850913-5	chr17	83850362	83851362	+	829.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155490)	TTS (NR_155490)	3556.0	NR_155490	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	11.44	3.23	9.25	1.35	5.6	7.23	14.79	8.4	5.0
Merged-chr2-28593043-3	chr2	28592552	28593552	+	829.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9773.0	NM_001290484	70239.0	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	24.03	10.6	2.77	14.84	4.2	6.43	15.84	9.29	3.75
Merged-chr19-17247557-3	chr19	17247048	17248048	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91957.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	23.45	35.48	12.95	35.09	31.26	40.99	28.52	44.66	24.98
Merged-chr13-37803408-3	chr13	37802925	37803925	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-22613.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	32.04	21.2	16.65	20.92	13.53	13.66	27.46	34.49	19.36
Merged-chr3-107097547-3	chr3	107097071	107098071	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3996.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	41.76	43.77	49.95	85.01	93.77	92.44	167.93	198.09	79.94
Merged-chr14-25832454-3	chr14	25831966	25832966	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9689.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	4.0	1.38	7.4	6.75	4.2	1.61	4.22	2.65	3.75
Merged-chr11-50047865-1	chr11	50047365	50048365	+	829.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-21837.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	49.77	53.45	57.35	79.62	56.45	53.05	72.88	64.56	34.97
Merged-chr7-75641952-3	chr7	75641454	75642454	+	829.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	186420.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	117.27	134.55	49.95	126.17	135.29	53.85	22.18	13.27	16.24
Merged-chr2-60805519-1	chr2	60805019	60806019	+	829.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	75919.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	13.16	5.07	4.62	10.12	12.13	6.43	10.56	11.05	6.87
Merged-chr7-66119054-3	chr7	66118551	66119551	+	829.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	9536.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	18.31	26.26	24.05	13.49	10.73	15.27	16.9	12.38	4.37
Merged-chr1-190929193-1	chr1	190928693	190929693	+	829.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357133, intron 1 of 8)	B1F|SINE|Alu	371.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	122.99	98.61	111.92	152.49	117.56	143.07	159.48	122.92	54.33
Merged-chr1-51498148-2	chr1	51497651	51498651	+	829.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19752.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	21.17	28.11	13.87	10.12	23.79	34.56	25.35	23.43	18.74
Merged-chr5-150611798-2	chr5	150611286	150612286	+	829.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362416, intron 6 of 7)	L3|LINE|CR1	-17261.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	2.29	2.76	3.7	2.02	7.0	5.63	8.45	2.65	6.25
Merged-chr12-35554429-2	chr12	35553921	35554921	+	829.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19432.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	39.47	50.69	39.77	41.83	51.32	53.05	26.4	19.9	21.23
Merged-chr9-14769175-3	chr9	14768713	14769713	+	829.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029306, intron 1 of 3)	intron (NM_029306, intron 1 of 3)	1817.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	9.72	8.29	0.0	14.84	12.6	12.06	7.39	4.42	1.25
Merged-chr1-186708927-3	chr1	186708421	186709421	+	829.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2932.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	15.45	11.06	9.25	10.12	7.93	10.45	4.22	3.54	0.0
Merged-chr4-58566906-3	chr4	58566394	58567394	+	829.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13403.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	13.16	18.89	7.4	14.17	11.2	8.04	10.56	11.94	9.37
Merged-chr2-93345991-4	chr2	93345455	93346455	+	829.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11468.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	37.18	15.67	24.05	25.64	12.6	26.53	20.07	11.94	8.12
Merged-chr18-73703199-3	chr18	73702652	73703652	+	829.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155448)	promoter-TSS (NR_155448)	589.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	85.81	48.38	70.3	67.47	41.99	53.85	91.89	34.93	55.58
Merged-chr14-67899019-3	chr14	67898518	67899518	+	829.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	34554.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	6.86	2.3	5.55	4.72	2.33	0.0	6.34	3.1	5.0
Merged-chr5-8659894-1	chr5	8659394	8660394	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011076, intron 2 of 29)	intron (NM_011076, intron 2 of 29)	-36942.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	5.72	4.61	0.0	7.42	4.2	11.25	6.34	3.98	3.75
Merged-chr1-13291796-2	chr1	13291297	13292297	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	80632.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	9.72	4.61	7.4	8.1	10.26	9.65	4.22	7.96	3.75
Merged-chr2-146100002-2	chr2	146099507	146100507	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121990.0	NM_016889	53626.0	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	2.86	2.3	5.55	2.02	5.13	3.22	3.17	0.88	3.12
Merged-chr18-34930987-2	chr18	34930504	34931504	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144866, intron 2 of 10)	intron (NM_144866, intron 2 of 10)	999.0	NM_144866	225363.0	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	411.88	522.99	349.63	370.42	341.48	270.07	391.84	512.47	302.9
Merged-chr15-76780965-3	chr15	76780454	76781454	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	37216.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	46.91	53.45	39.77	47.9	45.72	49.03	24.29	12.38	21.86
Merged-chr6-89422787-3	chr6	89422294	89423294	+	829.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-60181.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	36.61	23.04	14.8	26.99	7.93	16.08	28.52	23.43	13.74
Merged-chr10-54032499-1	chr10	54031999	54032999	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	43297.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	6.86	4.61	10.17	6.07	6.06	5.63	4.22	3.1	8.74
Merged-chr6-32249289-1	chr6	32248789	32249789	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 5 of 31)	intron (NM_175750, intron 5 of 31)	199001.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	6.29	3.23	7.4	5.4	1.87	6.43	5.28	3.54	2.5
Merged-chr18-53265706-2	chr18	53265275	53266275	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	B1_Mur2|SINE|Alu	20113.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	232.25	287.99	215.51	263.14	298.1	255.6	240.81	349.75	171.12
Merged-chr9-79816661-1	chr9	79816161	79817161	+	829.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357352, intron 5 of 5)	intron (NM_001357352, intron 5 of 5)	14321.0	NM_001357354	70598.0	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	4.0	2.3	1.85	3.37	7.46	3.22	5.28	3.54	0.0
Merged-chrX-96147927-3	chrX	96147428	96148428	+	829.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	51883.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	33.75	71.88	43.47	31.71	40.12	36.97	48.58	33.6	46.22
Merged-chr1-106758975-2	chr1	106758469	106759469	+	829.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027534, intron 1 of 9)	intron (NM_027534, intron 1 of 9)	773.0	NM_027534	70750.0	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	60.07	60.36	51.8	70.17	91.9	93.24	58.09	68.09	43.72
Merged-chr5-139387983-3	chr5	139387474	139388474	+	829.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1930.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	62.35	44.24	77.7	74.89	50.85	90.02	55.98	39.8	49.34
Merged-chr10-22747153-3	chr10	22746652	22747652	+	829.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15705.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	21.17	16.59	9.25	25.64	12.13	26.53	7.39	3.54	5.0
Merged-chr17-15812591-3	chr17	15812083	15813083	+	829.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	14003.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	31.46	23.04	27.75	33.06	12.6	28.94	34.85	48.2	29.35
Merged-chr13-9354028-2	chr13	9353516	9354516	+	829.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	77491.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	8.01	3.23	8.32	10.12	1.87	3.22	7.39	6.19	2.5
Merged-chr1-156620233-2	chr1	156619754	156620754	+	829.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	54085.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	20.02	9.22	11.1	23.62	15.86	9.65	20.07	8.84	16.24
Merged-chr18-67435601-3	chr18	67435105	67436105	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027130, intron 5 of 16)	L1MEf|LINE|L1	13531.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	12.59	11.06	11.1	12.82	10.26	16.08	11.62	7.96	14.99
Merged-chr5-79794969-1	chr5	79794469	79795469	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1225602.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	5.15	4.15	2.77	5.4	5.13	3.22	3.17	4.42	7.49
Merged-chr5-143499882-1	chr5	143499382	143500382	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144915, intron 11 of 14)	intron (NM_144915, intron 11 of 14)	28111.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	6.86	8.29	8.32	9.45	4.67	4.82	6.34	1.77	8.74
Merged-chr6-49039716-2	chr6	49039219	49040219	+	829.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053110, intron 1 of 10)	B3A|SINE|B2	3201.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	2.29	1.38	1.85	2.7	4.67	0.8	7.39	0.44	5.0
Merged-chr7-100226034-3	chr7	100225563	100226563	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1544.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	16.59	22.12	5.55	18.89	14.0	18.49	16.9	9.73	13.74
Merged-chr5-39838074-3	chr5	39837572	39838572	+	829.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-193441.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	6.86	2.76	1.85	2.02	7.46	8.04	3.17	5.31	8.74
Merged-chr4-119968302-2	chr4	119967799	119968799	+	829.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	153621.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	41.76	30.87	42.55	73.54	51.78	78.77	39.08	39.8	38.1
Merged-chr16-90712474-3	chr16	90711941	90712941	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14930.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	7.44	4.61	0.0	18.89	8.86	11.25	13.73	3.98	7.49
Merged-chr6-28621698-3	chr6	28621209	28622209	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	141361.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	40.04	58.52	54.57	39.13	31.72	27.33	59.15	58.81	36.85
Merged-chr19-59073239-3	chr19	59072737	59073737	+	829.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 1 of 16)	intron (NM_001114312, intron 1 of 16)	2832.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	39.47	41.93	25.9	37.11	35.92	28.94	21.12	29.18	14.99
Merged-chr2-119163334-3	chr2	119162821	119163821	+	829.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4467.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	17.16	26.26	24.05	34.41	32.19	32.15	6.34	4.42	3.75
Merged-chr2-5474517-1	chr2	5474017	5475017	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	ORR1C2|LTR|ERVL-MaLR	95127.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	18.88	7.83	18.5	16.87	9.8	8.84	14.79	8.84	13.74
Merged-chr13-78199200-1	chr13	78198700	78199700	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010151)	promoter-TSS (NM_010151)	-327.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	3.43	0.0	0.0	3.37	1.4	2.41	4.22	0.88	0.0
Merged-chr4-102567722-1	chr4	102567222	102568222	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-2338.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	44.05	56.68	82.32	38.46	27.99	61.09	48.58	42.45	34.97
Merged-chr10-88623731-1	chr10	88623231	88624231	+	829.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18579.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	38.33	23.5	10.17	32.39	21.46	25.72	11.62	17.24	7.49
Merged-chr4-140906263-2	chr4	140905756	140906756	+	829.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-104.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	5.15	4.61	0.0	7.42	1.87	3.22	5.28	1.33	2.5
Merged-chr17-34349604-3	chr17	34349103	34350103	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4958.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	14.87	12.44	9.25	10.8	6.06	3.22	9.51	7.52	6.87
Merged-chr5-90603550-3	chr5	90603044	90604044	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028478, exon 11 of 11)	3' UTR (NM_028478, exon 11 of 11)	36983.0	NM_028478	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	2.86	6.45	12.02	4.05	4.2	3.22	2.11	3.1	5.0
Merged-chr4-15257004-3	chr4	15256502	15257502	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8818.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	8.01	7.83	6.47	11.47	12.13	12.86	5.28	0.44	2.5
Merged-chr6-108549745-3	chr6	108549259	108550259	+	829.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010585, exon 62 of 62)	exon (NM_010585, exon 62 of 62)	60016.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.86	4.61	1.85	4.72	7.46	8.04	16.9	9.73	5.0
Merged-chr11-98359513-1	chr11	98359013	98360013	+	829.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021547, intron 1 of 14)	intron (NM_021547, intron 1 of 14)	1145.0	NM_021547	59045.0	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	65.21	71.42	57.35	95.14	90.97	73.14	91.89	115.85	53.08
Merged-chr6-97489043-3	chr6	97488547	97489547	+	829.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-1227.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	98.39	101.37	98.97	95.14	90.04	89.22	111.96	146.8	68.7
Merged-chr15-67782165-3	chr15	67781756	67782756	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	476600.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	21.17	16.13	11.1	11.47	7.46	5.63	21.12	6.63	29.35
Merged-chr2-141033653-3	chr2	141033159	141034159	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 5 of 18)	MLT1C|LTR|ERVL-MaLR	-362183.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	9.15	3.69	0.92	4.72	1.4	9.65	3.17	2.21	2.5
Merged-chr9-55255217-3	chr9	55254731	55255731	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	LTR37-int|LTR|ERV1	28394.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	58.35	82.02	34.22	130.9	133.42	133.43	111.96	118.94	67.45
Merged-chr12-55560330-3	chr12	55559893	55560893	+	829.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4812.0	NM_001277340	79459.0	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	20.59	24.88	1.85	27.66	15.86	8.04	16.9	12.82	5.0
Merged-chr2-153164608-2	chr2	153164135	153165135	+	829.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	3334.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	25.74	35.94	22.2	30.36	27.06	41.8	39.08	29.63	23.73
Merged-chr14-63117194-2	chr14	63116702	63117702	+	829.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5260.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	73.79	89.39	49.02	109.3	72.31	85.2	97.17	87.55	42.47
Merged-chr13-98812451-3	chr13	98811959	98812959	+	829.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	2990.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	40.62	36.86	16.65	37.78	20.99	36.97	68.65	48.64	49.96
Merged-chr9-102835279-3	chr9	102834791	102835791	+	829.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	CpG	371.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	13.73	11.98	19.42	17.54	11.66	12.06	10.56	2.21	8.74
Merged-chr16-76763950-2	chr16	76763450	76764450	+	829.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	15142.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	66.36	52.53	26.82	85.01	69.51	76.36	176.38	155.64	56.21
Merged-chr6-21998314-3	chr6	21997797	21998797	+	829.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081351, intron 1 of 21)	intron (NM_001081351, intron 1 of 21)	12387.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	4.58	2.3	1.85	2.7	4.2	8.04	5.28	3.54	1.25
Merged-chr15-35460446-2	chr15	35459946	35460946	+	829.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 16 of 61)	intron (NM_177151, intron 16 of 61)	88900.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	3.43	5.53	5.55	4.05	2.33	3.22	5.28	5.31	3.12
Merged-chr18-80468581-3	chr18	80468050	80469050	+	829.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 1 of 12)	intron (NM_026295, intron 1 of 12)	1117.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	65.21	59.9	37.92	71.52	54.11	49.03	54.92	62.79	28.73
Merged-chr11-53850107-3	chr11	53849613	53850613	+	829.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	9143.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	9.15	5.07	1.85	5.4	6.06	8.04	13.73	13.71	5.0
Merged-chr4-136029552-2	chr4	136029061	136030061	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7912.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	16.59	15.21	13.87	33.06	27.99	30.54	16.9	19.9	5.62
Merged-chr4-9631283-2	chr4	9630804	9631804	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177856, intron 4 of 4)	intron (NM_001177856, intron 4 of 4)	12413.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	383.85	306.88	191.47	387.29	281.3	199.34	371.78	494.34	249.81
Merged-chr6-71476906-1	chr6	71476406	71477406	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16971.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	12.01	8.29	3.7	14.84	7.0	14.47	23.24	11.5	3.12
Merged-chr11-32552813-1	chr11	32552313	32553313	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	19547.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	48.05	37.78	43.47	45.88	42.45	90.83	48.58	36.7	38.72
Merged-chr2-35183403-1	chr2	35182903	35183903	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026697, exon 7 of 8)	exon (NM_026697, exon 7 of 8)	17717.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	9.15	11.52	4.62	18.22	19.13	11.25	14.79	8.4	5.0
Merged-chr15-25358777-2	chr15	25358279	25359279	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54985.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	12.01	10.6	0.92	53.3	41.52	41.8	133.08	105.24	46.22
Merged-chr12-110687021-3	chr12	110686517	110687517	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-4398.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	13.16	11.98	18.5	12.82	12.13	8.84	2.11	6.19	6.25
Merged-chr10-13200637-1	chr10	13200137	13201137	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7500.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	14.87	12.9	8.32	6.75	5.13	16.88	9.51	13.27	19.36
Merged-chr13-119713629-2	chr13	119713143	119714143	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 3 of 3)	intron (NM_175538, intron 3 of 3)	23292.0	NM_001291439	208715.0	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	17.16	21.66	17.57	25.64	19.13	36.17	9.51	16.8	13.12
Merged-chr4-55476425-2	chr4	55475927	55476927	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56048.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.72	4.15	3.7	12.14	12.13	4.82	1.06	4.86	0.62
Merged-chr13-5605064-3	chr13	5604546	5605546	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	253046.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	81.8	93.08	79.55	113.35	107.76	101.28	63.37	83.57	61.83
Merged-chr11-53774198-3	chr11	53773662	53774662	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159396, exon 6 of 10)	exon (NM_001159396, exon 6 of 10)	3689.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	41.76	33.64	58.27	18.22	26.59	24.11	52.81	43.77	29.98
Merged-chr18-64929719-1	chr18	64929219	64930219	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	41963.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.29	0.92	3.7	2.7	0.0	3.22	4.22	0.88	7.49
Merged-chr7-19301272-3	chr7	19300767	19301767	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-SeC(e)-TGA|tRNA|tRNA	8778.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	60.07	63.13	17.57	56.68	63.91	37.78	61.26	62.35	27.48
Merged-chr7-127770720-1	chr7	127770220	127771220	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198424, intron 1 of 1)	intron (NM_198424, intron 1 of 1)	905.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	50.34	58.52	30.52	47.23	32.19	49.83	32.74	38.47	27.48
Merged-chr10-82767400-1	chr10	82766900	82767900	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3259.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	7.44	2.76	0.92	5.4	3.73	4.02	1.06	1.33	2.5
Merged-chr12-73445307-1	chr12	73444807	73445807	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35744.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	4.0	3.69	0.0	10.8	8.86	11.25	4.22	1.33	7.49
Merged-chr7-80778623-2	chr7	80778123	80779123	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	MIR|SINE|MIR	24708.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	68.65	55.29	49.02	96.48	48.98	73.95	122.52	83.13	76.19
Merged-chr3-84885162-1	chr3	84884662	84885662	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	21017.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	10.87	14.28	12.02	20.92	12.13	13.66	8.45	7.96	11.87
Merged-chr9-40783529-2	chr9	40783035	40784035	+	829.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133733, exon 7 of 7)	3' UTR (NM_133733, exon 7 of 7)	-17738.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	110.41	152.52	112.84	111.33	93.3	87.61	188.0	246.73	116.79
Merged-chr1-51525783-1	chr1	51525283	51526283	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-47384.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	20.02	16.59	18.5	9.45	7.0	12.06	5.28	2.21	8.74
Merged-chr17-25188391-3	chr17	25187906	25188906	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197024)	promoter-TSS (NM_001197024)	6.0	NM_001197024	74154.0	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	164.75	88.01	92.5	107.28	47.12	69.93	137.3	53.06	26.85
Merged-chr11-101316646-1	chr11	101316146	101317146	+	829.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011192, intron 1 of 10)	intron (NM_011192, intron 1 of 10)	433.0	NM_011192	19192.0	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	217.95	183.85	172.97	180.82	152.08	131.02	154.2	156.97	92.43
Merged-chr13-9388240-3	chr13	9387732	9388732	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	111707.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	32.04	33.64	21.27	31.71	24.26	14.47	15.84	19.01	19.98
Merged-chr10-82629315-3	chr10	82628810	82629810	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011561)	promoter-TSS (NM_011561)	-528.0	NM_001358517	21665.0	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	104.69	104.14	65.67	84.34	69.51	69.13	133.08	127.34	81.81
Merged-chr3-142620164-3	chr3	142619671	142620671	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010260)	promoter-TSS (NM_010260)	-492.0	NM_010260	14469.0	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	253.42	379.23	228.46	234.13	214.59	227.47	183.78	225.95	134.27
Merged-chr3-87769070-3	chr3	87768576	87769576	+	829.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289601)	promoter-TSS (NM_001289601)	-123.0	NM_152799	73182.0	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	5.72	2.76	1.85	2.7	5.6	6.43	4.22	0.44	0.0
Merged-chr1-39464030-3	chr1	39463550	39464550	+	828.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357521, intron 1 of 19)	intron (NM_001357521, intron 1 of 19)	14697.0	NM_018775	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	10.87	7.83	8.32	22.27	18.19	16.08	30.63	19.01	23.73
Merged-chr2-102037278-3	chr2	102036808	102037808	+	828.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	MIRb|SINE|MIR	149152.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	5.15	1.84	3.7	12.14	4.2	6.43	3.17	8.84	8.74
Merged-chr1-157285567-3	chr1	157285063	157286063	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-126789.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	6.29	7.83	0.0	11.47	10.26	4.02	10.56	4.86	11.24
Merged-chr12-3812819-3	chr12	3812318	3813318	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	5658.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	42.33	38.71	24.97	39.13	32.19	31.35	87.66	69.86	18.74
Merged-chr12-52604553-3	chr12	52604056	52605056	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-2234.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	273.44	306.88	160.02	242.22	245.38	188.09	240.81	326.32	159.88
Merged-chr3-96567314-3	chr3	96566811	96567811	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040409)	promoter-TSS (NR_040409)	-510.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	18.31	25.8	40.7	25.64	15.86	39.39	26.4	22.11	22.48
Merged-chr2-27428255-3	chr2	27427773	27428773	+	828.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009500)	promoter-TSS (NM_009500)	-665.0	NM_009500	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	8.01	2.3	12.95	6.75	1.4	3.22	6.34	6.63	2.5
Merged-chr19-37814662-2	chr19	37814157	37815157	+	828.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116849.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	5.15	15.67	15.72	9.45	7.0	7.23	22.18	7.96	6.87
Merged-chr13-35482504-3	chr13	35481987	35482987	+	828.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177375.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	6.86	3.69	3.7	2.02	3.73	3.22	3.17	6.19	1.25
Merged-chr12-17666783-3	chr12	17666281	17667281	+	828.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24028.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	4.58	6.45	5.55	2.7	7.0	8.04	6.34	4.86	3.12
Merged-chr4-119959573-2	chr4	119959083	119960083	+	828.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	144905.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	4.58	2.76	1.85	9.45	4.67	4.82	6.34	5.75	3.75
Merged-chr7-98307530-2	chr7	98307012	98308012	+	828.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2030.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	72.65	99.07	30.52	85.01	74.64	53.05	79.21	59.69	41.22
Merged-chr3-131868409-2	chr3	131867905	131868905	+	828.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-216887.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.43	5.53	11.1	9.45	11.2	38.58	8.45	8.84	18.11
Merged-chr16-91737067-3	chr16	91736608	91737608	+	828.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7737.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	76.08	70.04	58.27	87.04	66.24	65.91	55.98	61.9	31.23
Merged-chr11-80156001-5	chr11	80155506	80156506	+	828.852356	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 2 of 10)	intron (NM_172133, intron 2 of 10)	1844.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	221.38	257.12	175.74	205.79	202.0	225.86	278.83	313.94	151.14
Merged-chr12-108333175-2	chr12	108332685	108333685	+	828.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1131.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	34.32	26.73	34.22	14.17	12.13	12.86	7.39	9.29	6.87
Merged-chr13-45395584-2	chr13	45395098	45396098	+	828.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	5856.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	25.17	17.97	17.57	26.31	7.93	24.11	11.62	11.05	5.62
Merged-chr14-118137651-2	chr14	118137142	118138142	+	828.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021434, intron 1 of 8)	intron (NM_021434, intron 1 of 8)	515.0	NM_021434	58245.0	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	27.46	25.8	20.35	51.95	44.78	33.76	31.69	20.78	24.98
Merged-chr8-77116895-3	chr8	77116354	77117354	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083906, intron 3 of 8)	intron (NM_001083906, intron 3 of 8)	214346.0	NM_001083906	110784.0	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	41.19	50.69	18.5	37.78	75.57	17.68	72.88	74.73	18.11
Merged-chr17-5276098-3	chr17	5275617	5276617	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 6 of 19)	intron (NM_001085355, intron 6 of 19)	142650.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	22.31	13.36	9.25	22.27	14.0	20.9	19.01	9.73	10.62
Merged-chr16-31429867-3	chr16	31429360	31430360	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152205)	promoter-TSS (NR_152205)	-84.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	1.72	2.76	3.7	9.45	3.27	4.82	1.06	4.86	0.0
Merged-chr2-128871840-3	chr2	128871325	128872325	+	828.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024237, intron 1 of 7)	intron (NM_024237, intron 1 of 7)	7893.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	18.88	17.97	3.7	65.45	56.91	20.9	30.63	18.57	8.74
Merged-chr12-108650720-3	chr12	108650216	108651216	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 3 of 14)	L1M5|LINE|L1	-7904.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	77.8	80.64	66.6	102.56	109.16	109.32	176.38	181.29	111.17
Merged-chr6-113659864-3	chr6	113659360	113660360	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	21393.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	166.47	127.64	95.27	201.07	112.9	146.29	177.44	175.98	99.92
Merged-chr7-19843790-3	chr7	19843290	19844290	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8213.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	38.33	21.2	0.0	25.64	15.39	8.04	31.69	17.69	6.87
Merged-chr2-78397109-3	chr2	78396613	78397613	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	159566.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	2.29	3.69	5.55	4.05	1.4	3.22	5.28	3.1	7.49
Merged-chr13-59835348-3	chr13	59834874	59835874	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12227.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	59.49	25.34	17.57	59.38	20.99	23.31	6.34	3.54	6.25
Merged-chr13-59847798-3	chr13	59847304	59848304	+	828.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-24657.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	10.3	12.44	9.25	3.37	3.73	5.63	6.34	5.31	3.75
Merged-chr3-109456536-1	chr3	109456036	109457036	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	115853.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.29	3.69	5.55	8.77	9.33	12.86	6.34	3.54	5.62
Merged-chr8-23038609-2	chr8	23038108	23039108	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	3509.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.0	1.38	11.1	3.37	2.33	3.22	12.67	8.84	13.74
Merged-chr7-64038095-1	chr7	64037595	64038595	+	828.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99180.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	10.87	4.15	0.0	12.82	6.06	8.04	5.28	1.77	6.25
Merged-chr19-36554816-2	chr19	36554313	36555313	+	828.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172637, exon 1 of 21)	exon (NM_172637, exon 1 of 21)	174.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	10.3	1.38	7.4	8.77	8.86	1.61	11.62	5.75	5.0
Merged-chr17-26235578-3	chr17	26235152	26236152	+	828.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	8590.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	118.99	137.31	101.74	126.17	93.77	136.64	235.53	313.94	81.81
Merged-chr13-81132114-3	chr13	81131543	81132543	+	828.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	167969.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	70.93	73.26	65.67	105.26	69.51	83.59	91.89	84.45	30.6
Merged-chr6-127359523-3	chr6	127359044	127360044	+	828.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51577.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	11.44	2.76	5.55	5.4	3.73	0.0	3.17	0.88	1.25
Merged-chr3-87616250-2	chr3	87615759	87616759	+	828.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1300.0	NM_001360197	213498.0	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	13.16	27.19	25.9	29.69	19.59	21.7	12.67	15.92	19.36
Merged-chr18-57636025-3	chr18	57635504	57636504	+	828.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045360, intron 2 of 2)	intron (NR_045360, intron 2 of 2)	2581.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	5.15	9.22	0.0	2.7	6.06	11.25	5.28	7.52	3.12
Merged-chr8-103482480-1	chr8	103481980	103482980	+	828.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121319.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	2.86	3.23	1.85	4.72	4.2	3.22	9.51	1.33	8.74
Merged-chr12-111417577-3	chr12	111417059	111418059	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028807, exon 1 of 13)	5' UTR (NM_028807, exon 1 of 13)	114.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	13.73	13.82	0.0	10.12	5.13	8.84	24.29	7.07	15.61
Merged-chr13-24338460-3	chr13	24337943	24338943	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	MTEa|LTR|ERVL-MaLR	11039.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	29.17	29.03	36.07	30.36	29.86	36.97	47.53	63.23	37.47
Merged-chr12-86893922-3	chr12	86893418	86894418	+	828.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9104.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	108.12	130.4	83.25	117.4	99.83	111.73	171.1	210.47	106.17
Merged-chr4-53265544-1	chr4	53265044	53266044	+	828.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033140)	promoter-TSS (NR_033140)	-52.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	15.45	5.99	11.1	6.07	4.2	12.06	7.39	7.07	6.25
Merged-chr8-128610931-2	chr8	128610449	128611449	+	828.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74705.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.43	4.61	1.85	6.75	4.2	4.82	4.22	2.65	5.62
Merged-chr17-50071772-2	chr17	50071265	50072265	+	828.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	118732.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.43	2.76	0.92	5.4	6.06	4.02	2.11	2.21	5.62
Merged-chr3-115924547-2	chr3	115924059	115925059	+	828.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027193, intron 5 of 7)	intron (NM_027193, intron 5 of 7)	36376.0	NM_027193	69740.0	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	28.03	22.12	35.15	23.62	17.26	28.94	5.28	5.31	10.62
Merged-chr8-36952416-4	chr8	36951919	36952919	+	828.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	23.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	81.23	108.75	63.82	83.66	72.78	61.09	102.45	87.11	51.21
Merged-chr15-9070495-3	chr15	9070019	9071019	+	828.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286255)	promoter-TSS (NM_001286255)	-741.0	NM_001286255	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	57.21	74.65	45.32	66.12	64.38	57.87	94.0	98.6	38.72
Merged-chr13-54824876-3	chr13	54824360	54825360	+	828.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35455.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	42.33	41.01	66.6	39.81	34.52	53.85	36.97	36.26	19.98
Merged-chr19-43921576-1	chr19	43921076	43922076	+	828.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	18622.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	18.88	17.97	0.0	20.92	20.06	10.45	5.28	6.63	7.49
Merged-chr10-25411630-3	chr10	25411128	25412128	+	828.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	AT_rich|Low_complexity|Low_complexity	3260.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	29.75	43.77	33.3	33.06	26.12	21.7	24.29	27.86	17.49
Merged-chr17-70994700-2	chr17	70994210	70995210	+	828.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357820, exon 4 of 4)	exon (NM_001357820, exon 4 of 4)	3302.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	40.04	39.17	23.12	45.88	34.06	47.42	16.9	14.59	14.99
Merged-chr18-46334278-2	chr18	46333758	46334758	+	828.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22330.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	13.16	7.83	13.87	11.47	10.73	22.51	14.79	12.82	7.49
Merged-chr6-54022550-2	chr6	54022048	54023048	+	828.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17384.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	7.44	3.69	2.77	4.72	4.2	6.43	32.74	26.97	17.49
Merged-chr1-87026166-2	chr1	87025663	87026663	+	828.575012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	Lx8b|LINE|L1	63765.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	8.58	14.28	12.95	18.89	16.33	33.76	13.73	17.24	14.36
Merged-chr3-89905205-3	chr3	89904722	89905722	+	828.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	7974.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	56.63	72.8	49.95	40.48	51.32	46.62	61.26	61.9	48.71
Merged-chr10-122736281-3	chr10	122735776	122736776	+	828.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	56961.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	104.69	128.56	98.97	90.41	84.9	81.99	207.01	277.68	123.03
Merged-chr10-121373148-3	chr10	121372654	121373654	+	828.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 2 of 13)	MTD|LTR|ERVL-MaLR	8064.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	53.2	47.46	37.92	49.93	42.45	47.42	65.48	74.73	39.35
Merged-chr4-56121843-3	chr4	56121316	56122316	+	828.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-589341.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	25.17	16.59	37.92	18.89	8.86	34.56	32.74	16.36	21.23
Merged-chr13-52618767-2	chr13	52618274	52619274	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 3 of 13)	intron (NM_011518, intron 3 of 13)	21892.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	27.46	26.73	17.57	49.25	27.99	45.82	28.52	29.18	23.73
Merged-chr4-155840484-1	chr4	155839984	155840984	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024263, intron 1 of 9)	intron (NM_024263, intron 1 of 9)	804.0	NM_024263	74761.0	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	62.93	42.85	52.72	74.89	55.98	50.64	15.84	17.69	9.99
Merged-chr1-91757525-1	chr1	91757025	91758025	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43936.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	9.72	15.21	6.47	38.46	51.78	28.94	27.46	9.73	7.49
Merged-chr10-121613791-2	chr10	121613291	121614291	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359618, intron 6 of 24)	intron (NM_001359618, intron 6 of 24)	12541.0	NM_001081056	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	13.73	13.36	20.35	26.31	17.73	17.68	16.9	15.48	14.99
Merged-chr1-52909959-1	chr1	52909459	52910459	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	42881.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	2.29	2.3	6.47	5.4	5.13	3.22	3.17	3.1	2.5
Merged-chr11-43384595-3	chr11	43384079	43385079	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10118.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	314.06	423.46	188.69	252.34	247.72	201.75	293.62	404.14	152.38
Merged-chr18-70415604-2	chr18	70415111	70416111	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-56843.0	NM_029019	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	6.86	7.83	3.7	0.67	3.27	1.61	16.9	10.17	6.25
Merged-chr6-16856890-1	chr6	16856390	16857390	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	intron (NM_031198, intron 2 of 6)	41551.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	16.59	17.97	6.47	24.29	27.06	23.31	23.24	14.59	1.25
Merged-chr11-22850312-3	chr11	22849805	22850805	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	ID_B1|SINE|B4	9430.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	33.75	43.77	22.2	42.51	33.12	34.56	44.36	35.82	35.6
Merged-chr4-145017941-2	chr4	145017440	145018440	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 66 of 69)	intron (NM_001276465, intron 66 of 69)	124803.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	36.04	33.64	32.37	41.83	46.65	39.39	21.12	11.94	9.99
Merged-chr2-102360740-1	chr2	102360240	102361240	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020267, intron 2 of 4)	intron (NM_020267, intron 2 of 4)	40160.0	NM_020267	80985.0	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	4.0	3.69	5.55	10.8	14.46	12.06	14.79	6.19	13.74
Merged-chr15-12312068-2	chr15	12311579	12312579	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9417.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	13.73	3.69	6.47	16.87	18.66	11.25	11.62	9.73	3.75
Merged-chr3-117360259-2	chr3	117359709	117360709	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177664, exon 1 of 7)	exon (NM_177664, exon 1 of 7)	667.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	8.01	5.99	0.92	8.1	4.67	6.43	4.22	0.88	0.0
Merged-chr16-5050872-2	chr16	5050361	5051361	+	828.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001079814)	promoter-TSS (NM_001079814)	804.0	NM_001356320	170644.0	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	170.47	147.91	157.24	143.71	140.42	157.54	177.44	114.08	110.54
Merged-chr2-4929480-2	chr2	4928976	4929976	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010726, intron 5 of 8)	MTC|LTR|ERVL-MaLR	10480.0	NM_010726	16922.0	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	4.58	0.92	6.47	6.07	4.67	12.86	11.62	11.05	5.0
Merged-chr5-26905373-2	chr5	26904874	26905874	+	828.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	596.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	4.58	1.84	3.7	11.47	5.13	9.65	33.8	13.27	9.37
Merged-chr2-124710360-3	chr2	124709831	124710831	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	56750.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	141.87	179.71	131.34	132.92	135.75	169.6	209.12	211.36	139.27
Merged-chr4-128768325-3	chr4	128767834	128768834	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001009819, exon 5 of 5)	3' UTR (NM_001009819, exon 5 of 5)	9076.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	15.45	5.53	13.87	8.77	7.93	1.61	8.45	3.98	1.25
Merged-chr10-58529957-3	chr10	58529414	58530414	+	828.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 10 of 15)	ORR1F|LTR|ERVL-MaLR	31977.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	61.78	70.04	42.55	31.04	25.66	20.9	82.38	79.15	44.34
Merged-chr6-120090675-3	chr6	120090162	120091162	+	828.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2718.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	36.61	17.51	7.4	31.04	37.79	8.84	38.02	31.39	13.74
Merged-chr13-111967225-3	chr13	111966710	111967710	+	828.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99274.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	16.02	22.12	14.8	77.59	91.9	65.11	61.26	89.76	24.98
Merged-chr5-123848378-2	chr5	123847865	123848865	+	828.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17151.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	18.88	16.59	12.95	19.57	14.46	12.86	67.6	61.9	21.86
Merged-chr9-82942069-2	chr9	82941577	82942577	+	828.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081216, intron 7 of 39)	intron (NM_001081216, intron 7 of 39)	33412.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	8.01	7.83	8.32	6.75	7.93	3.22	14.79	5.31	1.25
Merged-chr19-34633656-3	chr19	34633166	34634166	+	828.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 1 of 2)	intron (NM_053217, intron 1 of 2)	-3855.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	19.45	15.67	18.5	16.19	12.6	16.88	20.07	19.9	19.98
Merged-chr9-48444045-2	chr9	48443553	48444553	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10291.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	6.29	2.76	0.0	5.4	0.93	10.45	5.28	3.1	6.25
Merged-chr17-88190927-2	chr17	88190442	88191442	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65430.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	2.86	1.38	2.77	3.37	0.47	3.22	5.28	2.21	0.0
Merged-chr1-156455236-2	chr1	156454748	156455748	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	ORR1B1|LTR|ERVL-MaLR	19080.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	36.61	48.38	31.45	45.21	41.99	69.93	16.9	20.34	24.98
Merged-chr6-143751406-2	chr6	143750898	143751898	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100110.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	33.18	32.25	16.65	29.69	30.32	12.86	26.4	16.36	23.11
Merged-chr8-36172490-2	chr8	36171962	36172962	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16452.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	9.72	8.75	12.95	2.7	10.26	8.04	0.0	4.42	1.25
Merged-chr5-117388536-2	chr5	117388030	117389030	+	828.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028128, intron 1 of 10)	intron (NM_028128, intron 1 of 10)	493.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	53.2	62.21	33.3	52.63	46.18	49.83	59.15	38.47	48.09
Merged-chr7-143464094-2	chr7	143463597	143464597	+	828.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3047.0	NM_001161624	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	5.15	2.76	1.85	2.7	0.0	2.41	4.22	0.88	2.5
Merged-chr11-99068666-3	chr11	99068185	99069185	+	828.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172564, intron 12 of 12)	B4A|SINE|B4	20621.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	12.59	5.53	5.55	6.75	4.2	20.9	10.56	11.94	10.62
Merged-chr14-8102747-3	chr14	8102234	8103234	+	828.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	4523.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	50.91	53.45	44.4	45.88	36.85	39.39	54.92	37.58	27.48
Merged-chr10-91182699-1	chr10	91182199	91183199	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11080.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	89.24	96.3	67.52	80.29	71.84	57.07	118.29	130.88	90.56
Merged-chr15-57975645-1	chr15	57975145	57976145	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10258.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	37.18	40.09	27.75	49.93	40.12	36.17	54.92	51.73	26.85
Merged-chr10-8416305-1	chr10	8415805	8416805	+	828.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	102520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	9.15	6.45	7.4	9.45	7.93	8.04	6.34	8.4	7.49
Merged-chr8-106972969-4	chr8	106972440	106973440	+	828.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	37190.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	90.38	78.33	28.67	114.03	113.36	69.13	67.6	51.29	21.23
Merged-chr6-88821101-3	chr6	88820612	88821612	+	828.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166249, intron 6 of 7)	intron (NM_001166249, intron 6 of 7)	20823.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	18.31	7.83	3.7	11.47	4.67	22.51	12.67	12.82	13.12
Merged-chr6-72107172-3	chr6	72106674	72107674	+	828.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	9566.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	54.35	72.34	55.5	45.88	58.78	69.13	70.76	70.75	53.08
Merged-chr13-37827274-2	chr13	37826796	37827796	+	828.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039188)	intron (NM_001177868, intron 1 of 9)	-97.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	92.67	95.38	86.02	88.39	118.03	136.64	118.29	100.37	54.33
Merged-chr10-53449350-1	chr10	53448850	53449850	+	828.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39468.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	3.43	5.53	1.85	10.12	4.2	9.65	11.62	6.63	11.24
Merged-chrX-133692319-3	chrX	133691816	133692816	+	828.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153117, intron 1 of 3)	intron (NR_153117, intron 1 of 3)	-3323.0	NM_001105246	279653.0	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	1.14	0.92	0.0	3.37	0.93	1.61	2.11	0.88	0.0
Merged-chr13-52823965-3	chr13	52823491	52824491	+	828.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-66786.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	10.87	5.07	11.1	20.24	14.93	26.53	19.01	4.42	13.74
Merged-chr10-78429390-1	chr10	78428890	78429890	+	828.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3720.0	NM_007793	13014.0	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	12.59	3.23	12.95	6.75	5.13	5.63	19.01	8.4	8.74
Merged-chr5-136464486-1	chr5	136463986	136464986	+	828.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	L3|LINE|CR1	-88683.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	14.87	28.57	34.22	39.81	21.93	15.27	17.96	11.94	6.87
Merged-chr5-103817951-3	chr5	103817436	103818436	+	828.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 6 of 19)	intron (NM_133919, intron 6 of 19)	63363.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.29	3.23	10.17	4.72	4.67	6.43	9.51	4.86	9.99
Merged-chr2-45109668-5	chr2	45109158	45110158	+	828.1400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	CpG	619.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	150.45	216.11	242.34	165.98	190.34	264.45	241.87	187.92	228.58
Merged-chr8-35109829-2	chr8	35109348	35110348	+	828.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-144158.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	20.59	22.58	20.35	22.27	20.99	36.17	15.84	8.84	11.24
Merged-chr11-69120297-2	chr11	69119820	69120820	+	828.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033041)	promoter-TSS (NM_033041)	-133.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	24.6	17.97	4.62	12.82	5.6	9.65	25.35	22.11	13.12
Merged-chr15-5708650-3	chr15	5708147	5709147	+	828.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212329.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	13.73	17.97	12.02	14.84	14.0	17.68	31.69	19.01	16.86
Merged-chr11-114892466-3	chr11	114891963	114892963	+	828.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359812, intron 2 of 7)	RLTR12B2|LTR|ERVK	2422.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	88.1	61.28	57.35	77.59	74.64	77.97	84.49	93.3	63.7
Merged-chr5-113812868-3	chr5	113812365	113813365	+	828.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-12513.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	30.89	14.28	1.85	22.27	6.06	18.49	16.9	17.24	23.73
Merged-chr9-51028846-3	chr9	51028349	51029349	+	828.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19776.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	34.32	38.71	9.25	35.09	25.66	14.47	19.01	16.36	11.24
Merged-chr2-25240925-3	chr2	25240432	25241432	+	828.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1035.0	NM_026415	67859.0	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	5.72	4.15	0.0	8.77	4.2	14.47	5.28	3.54	2.5
Merged-chr10-127538462-2	chr10	127537986	127538986	+	828.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008512, exon 89 of 89)	3' UTR (NM_008512, exon 89 of 89)	-3927.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	2.86	3.69	10.17	4.05	2.8	9.65	5.28	5.31	3.75
Merged-chr14-114949054-2	chr14	114948553	114949553	+	828.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3105.0	NR_126548	74982.0		NR_126548	ENSMUSG00000115372	1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	32.61	23.04	10.17	57.35	61.58	34.56	8.45	15.03	5.62
Merged-chr2-128124680-3	chr2	128124122	128125122	+	828.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028765)	TTS (NM_028765)	-1416.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	16.02	8.29	3.7	14.84	10.73	8.04	20.07	7.07	12.49
Merged-chr18-39737890-3	chr18	39737395	39738395	+	828.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35602.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	15.45	16.13	12.95	21.59	16.79	16.88	25.35	15.03	21.86
Merged-chr1-36133277-3	chr1	36132772	36133772	+	828.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	11041.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	96.68	77.41	62.9	359.62	286.9	260.43	294.68	348.87	115.54
Merged-chr13-25793213-3	chr13	25792709	25793709	+	828.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173107.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	1.72	4.15	7.4	5.4	5.13	3.22	10.56	10.17	10.62
Merged-chr7-25187843-3	chr7	25187373	25188373	+	828.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29852.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	6.29	1.84	1.85	6.75	1.4	1.61	2.11	3.98	2.5
Merged-chr10-21465552-1	chr10	21465052	21466052	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88252.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	5.72	7.37	1.85	10.12	2.33	1.61	6.34	3.1	0.0
Merged-chr7-35423224-1	chr7	35422724	35423724	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153799, intron 11 of 19)	intron (NR_153799, intron 11 of 19)	-25868.0	NM_001199015	30962.0	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	2.86	2.76	3.7	2.7	1.87	2.41	3.17	5.31	2.5
Merged-chr15-36935425-1	chr15	36934925	36935925	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	71977.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	6.29	2.3	1.85	4.72	2.8	12.86	6.34	5.31	6.87
Merged-chr5-108066277-1	chr5	108065777	108066777	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253880, intron 1 of 12)	intron (NM_001253880, intron 1 of 12)	603.0	NR_152817	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	70.93	77.41	49.95	64.1	65.31	69.93	77.1	51.29	66.2
Merged-chr11-59230431-3	chr11	59229952	59230952	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2185.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	38.33	35.94	38.85	36.43	20.99	36.97	40.14	37.14	53.08
Merged-chr8-13669709-1	chr8	13669209	13670209	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	7878.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	10.3	14.75	11.1	10.12	8.86	16.08	16.9	10.17	7.49
Merged-chr16-57176490-3	chr16	57176003	57177003	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026254, intron 15 of 17)	intron (NM_026254, intron 15 of 17)	-9171.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	13.73	11.52	12.95	13.49	13.06	9.65	9.51	11.5	2.5
Merged-chr2-154657616-2	chr2	154657121	154658121	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	595.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	590.93	670.9	419.0	624.79	628.39	416.36	564.0	710.56	385.96
Merged-chr9-56114030-3	chr9	56113533	56114533	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	24057.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	6.86	9.22	5.55	6.75	10.26	11.25	9.51	7.52	3.12
Merged-chr14-31593681-3	chr14	31593167	31594167	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-16284.0	NM_009937	382864.0	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	41.19	31.33	49.95	51.28	17.26	27.33	53.87	41.12	17.49
Merged-chr15-73592893-1	chr15	73592393	73593393	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	MTD|LTR|ERVL-MaLR	3633.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	9.72	5.99	9.25	17.54	6.53	14.47	12.67	5.75	13.12
Merged-chr1-150335315-1	chr1	150334815	150335815	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040603, intron 2 of 3)	intron (NR_040603, intron 2 of 3)	11456.0	NR_040603	75584.0	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	1.72	0.46	3.7	3.37	9.33	0.0	2.11	3.1	0.0
Merged-chr7-80799390-1	chr7	80798890	80799890	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	3941.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	25.74	23.5	32.37	16.19	10.73	15.27	11.62	15.48	15.61
Merged-chr19-5425681-2	chr19	5425201	5426201	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024176)	promoter-TSS (NM_024176)	557.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	151.02	101.83	106.37	128.2	98.9	81.18	176.38	191.9	76.19
Merged-chr15-57893357-3	chr15	57892893	57893893	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-975.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	140.73	133.17	57.35	120.77	99.37	73.14	137.3	142.38	94.93
Merged-chr3-135200829-1	chr3	135200329	135201329	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11734.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	2.29	10.14	9.25	14.17	12.6	12.86	6.34	13.27	4.37
Merged-chr1-131077030-1	chr1	131076530	131077530	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	20813.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	16.02	13.82	7.4	18.89	7.93	21.7	23.24	10.17	8.74
Merged-chr15-97881576-1	chr15	97881076	97882076	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	26720.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	10.3	12.44	9.25	22.27	11.66	4.02	5.28	10.61	3.75
Merged-chr14-102492586-1	chr14	102492086	102493086	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	490046.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	3.43	4.15	3.7	6.07	8.86	12.86	5.28	3.54	3.75
Merged-chr1-78910504-1	chr1	78910004	78911004	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	93593.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	2.86	3.23	0.0	3.37	3.27	0.0	0.0	6.63	1.25
Merged-chr4-3744010-1	chr4	3743510	3744510	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	MIRb|SINE|MIR	29046.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	161.89	164.5	128.57	124.82	67.64	76.36	138.36	171.12	64.95
Merged-chr13-35955539-1	chr13	35955039	35956039	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12367.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	18.88	24.88	39.77	22.27	15.86	38.58	7.39	9.29	8.74
Merged-chr17-17648962-2	chr17	17648452	17649452	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24463.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	5.15	4.15	9.25	8.1	9.33	16.08	5.28	5.31	0.62
Merged-chr13-113442455-2	chr13	113441977	113442977	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60367.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	9.15	8.75	5.55	12.82	6.53	8.84	10.56	14.59	10.62
Merged-chr4-147432483-1	chr4	147431983	147432983	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-120794.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	6.86	5.99	14.8	10.12	16.33	15.27	9.51	7.52	28.1
Merged-chr1-165132726-1	chr1	165132226	165133226	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28047.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	1.72	5.07	1.85	4.72	2.8	3.22	2.11	1.33	3.12
Merged-chr8-94379230-1	chr8	94378730	94379730	+	828.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7199.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	6.86	5.99	3.7	5.4	1.87	1.61	7.39	6.63	5.0
Merged-chr19-44299501-1	chr19	44299001	44300001	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009128, intron 3 of 5)	intron (NM_009128, intron 3 of 5)	-3670.0	NR_039574	100628619.0		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	12.01	5.53	9.25	4.72	4.67	10.45	4.22	2.21	2.5
Merged-chr6-30357962-2	chr6	30357459	30358459	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33061.0	NM_172735	232679.0	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	5.15	5.07	5.55	1.35	0.47	5.63	2.11	6.19	2.5
Merged-chr6-117543569-1	chr6	117543069	117544069	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48334.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	6.86	5.07	8.32	8.77	5.13	12.86	6.34	4.42	15.61
Merged-chr12-113115523-1	chr12	113115023	113116023	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346696, intron 2 of 19)	MTE2a|LTR|ERVL-MaLR	17245.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	2.86	10.14	7.4	12.14	14.93	11.25	11.62	8.84	5.0
Merged-chr13-96671966-1	chr13	96671466	96672466	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1030.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	74.94	81.56	56.42	51.95	49.92	53.05	79.21	63.67	34.97
Merged-chrUn_JH584304-66180-1	chrUn_JH584304	65680	66680	+	828.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6491.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	61.26	28.74	0.0
Merged-chr12-35019191-1	chr12	35018691	35019691	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-27998.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	23.45	24.42	11.1	36.43	22.86	19.29	27.46	14.59	22.48
Merged-chr9-85762561-2	chr9	85762064	85763064	+	828.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13230.0	NM_175371	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	3.43	1.84	1.85	6.75	2.8	6.43	3.17	3.1	7.49
Merged-chr11-44538996-3	chr11	44538455	44539455	+	827.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	19578.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	81.8	61.28	66.6	51.28	46.65	58.68	81.33	80.92	62.45
Merged-chr2-131545608-3	chr2	131545112	131546112	+	827.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013460, exon 2 of 2)	3' UTR (NM_013460, exon 2 of 2)	16673.0	NM_013460	11550.0	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	4.58	3.69	0.92	2.02	0.93	3.22	1.06	1.33	5.0
Merged-chr11-101981104-3	chr11	101980656	101981656	+	827.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 2 of 2)	B4A|SINE|B4	3635.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	175.05	145.15	114.69	85.69	65.31	103.69	130.97	146.36	84.31
Merged-chr15-78574461-3	chr15	78573964	78574964	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155437)	TTS (NR_155437)	-1681.0	NM_009008	19354.0	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	Rac family small GTPase 2	protein-coding	44.05	39.63	30.52	39.13	26.12	24.11	59.15	44.22	24.98
Merged-chr6-37417713-3	chr6	37417212	37418212	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	24436.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.0	9.68	0.92	6.75	7.46	6.43	2.11	8.4	2.5
Merged-chr18-24652177-3	chr18	24651687	24652687	+	827.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1504.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	5.15	7.83	14.8	4.05	6.06	4.82	5.28	7.07	2.5
Merged-chr11-67586561-2	chr11	67586075	67587075	+	827.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109657)	promoter-TSS (NM_001109657)	75.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	5.72	3.23	7.4	6.07	1.87	4.82	4.22	2.21	6.87
Merged-chr15-53157458-2	chr15	53156956	53157956	+	827.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	188727.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.58	5.99	3.7	7.42	11.66	3.22	4.22	3.98	3.75
Merged-chr4-136071504-3	chr4	136070906	136071906	+	827.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-18035.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.0	5.99	5.55	6.07	2.33	2.41	9.51	1.77	0.0
Merged-chr14-67211907-3	chr14	67211413	67212413	+	827.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21379.0	NM_010095	13592.0	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	4.0	3.23	1.85	6.75	1.87	3.22	2.11	3.98	1.87
Merged-chr7-19764073-3	chr7	19763565	19764565	+	827.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020486, exon 8 of 15)	exon (NM_020486, exon 8 of 15)	6467.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	9.15	8.29	9.25	6.07	3.73	11.25	11.62	4.86	3.75
Merged-chr1-74240407-2	chr1	74239939	74240939	+	827.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3922.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	53.2	73.26	60.12	53.98	42.92	59.48	53.87	76.94	47.46
Merged-chr18-49643922-2	chr18	49643419	49644419	+	827.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111682.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	4.0	2.76	0.0	4.72	3.73	3.22	3.17	2.21	6.25
Merged-chr8-110604767-3	chr8	110604269	110605269	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 85 of 86)	intron (NM_172916, intron 85 of 86)	-13798.0	NR_151674	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	8.58	6.45	3.7	10.8	4.2	0.0	3.17	6.19	2.5
Merged-chr17-36266044-3	chr17	36265553	36266553	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357889, intron 3 of 4)	ORR1E|LTR|ERVL-MaLR	5378.0	NM_001357889	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	14.87	17.97	5.55	11.47	17.73	11.25	11.62	8.84	11.24
Merged-chr7-16242275-3	chr7	16241819	16242819	+	827.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146005)	promoter-TSS (NM_001146005)	12.0	NM_001146005	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	84.09	67.74	88.8	80.97	38.72	92.44	144.7	126.02	76.82
Merged-chr18-82976144-3	chr18	82975623	82976623	+	827.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-55563.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	9.72	10.14	15.72	6.75	9.33	9.65	15.84	14.15	3.75
Merged-chr15-99904567-3	chr15	99904064	99905064	+	827.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27094.0	NM_028180	72277.0	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	12.01	7.37	13.87	9.45	6.53	4.82	3.17	4.42	11.24
Merged-chr15-88732603-3	chr15	88732125	88733125	+	827.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033274, intron 1 of 12)	intron (NM_001033274, intron 1 of 12)	1594.0	NM_001033274	223770.0	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	49.77	51.61	42.55	44.53	43.85	64.3	82.38	55.71	44.34
Merged-chr11-76736139-3	chr11	76735618	76736618	+	827.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356321, intron 7 of 8)	intron (NM_001356321, intron 7 of 8)	27460.0	NM_016810	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	32.04	33.64	38.85	41.16	33.12	36.97	39.08	39.35	18.11
Merged-chrX-38402314-2	chrX	38401819	38402819	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290485, intron 8 of 8)	intron (NM_001290485, intron 8 of 8)	54141.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	17.16	16.13	21.27	25.64	34.06	29.74	46.47	53.06	19.98
Merged-chr18-66270847-1	chr18	66270347	66271347	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	20991.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	2.86	3.23	3.7	8.1	6.53	8.04	2.11	1.33	2.5
Merged-chr14-26466128-2	chr14	26465635	26466635	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 5 of 22)	intron (NM_001310445, intron 5 of 22)	68489.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	18.31	20.74	13.87	8.77	29.86	22.51	25.35	15.03	12.49
Merged-chr2-12174930-2	chr2	12174428	12175428	+	827.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 22 of 29)	intron (NM_001001309, intron 22 of 29)	-126318.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	5.72	7.83	7.4	3.37	5.6	6.43	8.45	6.63	9.99
Merged-chr18-46298825-3	chr18	46298324	46299324	+	827.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160399, intron 2 of 9)	Lx8|LINE|L1	13104.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	6.29	4.15	1.85	5.4	6.53	1.61	4.22	5.75	2.5
Merged-chr7-127278509-3	chr7	127277999	127278999	+	827.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4440.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	21.17	9.22	30.52	1.35	2.8	3.22	7.39	3.98	2.5
Merged-chr9-45954515-4	chr9	45953953	45954953	+	827.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152206, exon 1 of 1)	non-coding (NR_152206, exon 1 of 1)	467.0	NR_152206	100101457.0	Mm.397964	NR_152206	ENSMUSG00000111329	A830035O19Rik	-	RIKEN cDNA A830035O19 gene	ncRNA	374.7	436.36	276.56	302.95	378.34	276.5	298.9	378.94	180.49
Merged-chr19-43815949-3	chr19	43815442	43816442	+	827.703674	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 16 of 31)	PB1D11|SINE|Alu	-22861.0	NR_033472	100038628.0	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	-	predicted gene 10768	ncRNA	5.15	5.07	12.02	16.87	7.0	11.25	24.29	23.43	19.36
Merged-chr6-136661309-8	chr6	136660734	136661734	+	827.677124	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	intron (NM_025806, intron 1 of 10)	659.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	232.83	229.47	198.87	92.44	91.9	36.97	287.28	268.4	96.18
Merged-chr12-100429145-1	chr12	100428645	100429645	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	91677.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	14.3	9.68	14.8	14.17	13.53	36.97	8.45	4.42	9.37
Merged-chr3-108442501-1	chr3	108442001	108443001	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011319, intron 1 of 11)	intron (NM_011319, intron 1 of 11)	2758.0	NM_011319	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	18.88	10.14	10.17	20.24	10.73	9.65	14.79	7.07	9.99
Merged-chr3-94476549-1	chr3	94476049	94477049	+	827.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1746.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	4.0	3.69	5.55	5.4	4.2	4.82	5.28	3.1	5.0
Merged-chr2-37772049-3	chr2	37771544	37772544	+	827.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4205.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	8.01	1.38	9.25	2.02	1.87	3.22	2.11	0.44	5.0
Merged-chr12-70234596-1	chr12	70234096	70235096	+	827.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045174)	TTS (NR_045174)	6755.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	5.15	10.14	5.55	12.14	13.53	8.04	28.52	29.18	14.99
Merged-chrX-112320471-2	chrX	112319973	112320973	+	827.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313734, intron 1 of 6)	PB1D10|SINE|Alu	9121.0	NM_026565	68117.0	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	28.6	18.89	14.8	18.89	9.33	12.86	5.28	9.73	3.75
Merged-chr5-101994503-2	chr5	101993999	101994999	+	827.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	75422.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	66.36	69.58	62.9	10.8	8.4	24.92	80.27	73.84	61.83
Merged-chr6-106794630-2	chr6	106794129	106795129	+	827.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 3 of 10)	intron (NM_021449, intron 3 of 10)	5458.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	147.02	164.04	61.97	167.33	144.15	108.51	197.51	214.01	112.42
Merged-chr2-38290482-3	chr2	38289976	38290976	+	827.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-3092.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	10.3	11.06	11.1	11.47	9.8	17.68	10.56	13.71	14.99
Merged-chr2-128067540-3	chr2	128067060	128068060	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 14 of 17)	intron (NM_028765, intron 14 of 17)	-58478.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	14.3	7.37	0.92	10.8	10.73	6.43	11.62	16.36	11.24
Merged-chr11-11668525-3	chr11	11668020	11669020	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17405.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	48.62	32.72	56.42	41.16	30.79	44.21	52.81	53.06	48.09
Merged-chr8-36532828-3	chr8	36532336	36533336	+	827.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43645.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	12.01	8.75	4.62	16.87	8.4	12.86	5.28	3.1	7.49
Merged-chr4-126035543-3	chr4	126035038	126036038	+	827.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252651, intron 7 of 14)	intron (NM_001252651, intron 7 of 14)	10879.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	8.58	5.99	12.95	14.17	15.86	11.25	10.56	9.73	14.99
Merged-chr3-59208971-4	chr3	59208441	59209441	+	827.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	1941.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	99.54	132.25	77.7	106.61	72.31	90.83	111.96	139.28	77.44
Merged-chr19-21747578-3	chr19	21747079	21748079	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30761.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	1.72	4.15	0.0	3.37	3.73	2.41	1.06	2.65	5.0
Merged-chr11-120355222-3	chr11	120354749	120355749	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6285.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	30.32	31.79	27.75	31.71	23.79	45.01	40.14	23.43	14.36
Merged-chr8-61578984-3	chr8	61578474	61579474	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	12195.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	26.31	46.54	49.02	15.52	9.33	19.29	29.57	19.9	27.48
Merged-chr2-130733656-3	chr2	130733163	130734163	+	827.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029432, intron 27 of 36)	intron (NM_029432, intron 27 of 36)	-36144.0	NM_001081162	269356.0	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	66.36	42.39	45.32	49.93	25.19	32.15	79.21	62.35	32.48
Merged-chr5-137748731-5	chr5	137748272	137749272	+	827.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	2803.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	26.89	23.5	47.17	37.11	16.33	28.94	36.97	30.07	14.99
Merged-chr14-22020820-4	chr14	22020307	22021307	+	827.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 1 of 6)	intron (NM_028275, intron 1 of 6)	1095.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	48.05	68.66	74.0	41.16	43.85	28.13	50.7	69.42	48.09
Merged-chr5-90876285-2	chr5	90875796	90876796	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14949.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	40.62	31.33	23.12	68.15	48.05	52.25	28.52	18.13	24.98
Merged-chr10-7264988-2	chr10	7264484	7265484	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52747.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	12.59	10.14	18.5	20.24	23.33	12.86	4.22	0.88	0.62
Merged-chr13-75845388-3	chr13	75844887	75845887	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	5501.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	32.61	51.15	47.17	33.06	23.33	24.11	29.57	36.26	20.61
Merged-chr15-43363031-2	chr15	43362527	43363527	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80291.0	NM_008388	16341.0	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	11.44	7.83	8.32	0.0	3.73	1.61	1.06	4.86	3.75
Merged-chr9-13774907-3	chr9	13774428	13775428	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024025, intron 1 of 15)	RodERV21-int|LTR|ERV1	25747.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	5.72	8.75	9.25	6.07	9.8	13.66	8.45	1.77	13.74
Merged-chr4-19850886-1	chr4	19850386	19851386	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	32159.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	24.03	17.05	11.1	45.21	30.32	22.51	25.35	23.88	18.74
Merged-chr7-29169477-2	chr7	29168988	29169988	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182696)	promoter-TSS (NM_182696)	-722.0	NM_001358852	243897.0	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	9.72	2.76	4.62	8.1	2.33	3.22	48.58	31.39	26.23
Merged-chr10-82763582-2	chr10	82763057	82764057	+	827.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010914, intron 1 of 7)	CpG	584.0	NM_010914	18045.0	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	109.26	75.57	100.82	87.71	48.05	81.99	103.51	45.99	74.94
Merged-chr5-118459193-2	chr5	118458684	118459684	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101535.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.29	2.76	6.47	4.05	3.27	1.61	7.39	2.21	4.37
Merged-chr16-91354377-2	chr16	91353866	91354866	+	827.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18417.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	236.26	143.76	91.57	220.63	111.96	124.59	129.91	127.79	81.81
Merged-chr10-7992788-3	chr10	7992287	7993287	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36664.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	8.01	5.99	7.4	10.8	6.53	8.04	11.62	5.31	7.49
Merged-chr8-25535575-3	chr8	25535084	25536084	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	16825.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	8.01	8.29	5.55	4.72	1.87	4.82	7.39	7.52	7.49
Merged-chr7-75681308-3	chr7	75680819	75681819	+	827.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-167019.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	40.62	43.31	21.27	29.01	28.92	17.68	28.52	21.22	18.74
Merged-chr18-82475129-3	chr18	82474664	82475664	+	827.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010777)	promoter-TSS (NM_010777)	41.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.58	15.21	16.65	11.47	14.46	8.04	7.39	5.31	7.49
Merged-chr3-15245118-3	chr3	15244592	15245592	+	827.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87210.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	12.59	6.45	5.55	5.4	6.53	1.61	5.28	3.98	2.5
Merged-chr6-87153130-2	chr6	87152639	87153639	+	827.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 17 of 17)	ORR1F|LTR|ERVL-MaLR	48393.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	9.15	0.92	5.55	6.07	6.53	3.22	8.45	3.54	2.5
Merged-chr17-87293334-2	chr17	87292814	87293814	+	827.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	10428.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	8.58	6.91	3.7	17.54	6.06	4.82	7.39	6.63	3.75
Merged-chr2-160598031-3	chr2	160597529	160598529	+	827.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47868.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.0	4.61	7.4	2.7	1.87	1.61	1.06	0.44	2.5
Merged-chr18-46357070-3	chr18	46356581	46357581	+	827.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45153.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	8.01	15.21	15.72	11.47	5.6	7.23	22.18	11.5	8.12
Merged-chr6-5411150-3	chr6	5410666	5411666	+	827.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 2 of 4)	intron (NM_001355662, intron 2 of 4)	20756.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	3.43	5.07	3.7	1.35	2.33	8.84	2.11	1.77	2.5
Merged-chr1-119498872-4	chr1	119498397	119499397	+	827.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	ID_B1|SINE|B4	5885.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	36.61	31.79	61.05	35.09	26.12	69.93	65.48	29.18	25.61
Merged-chr15-59486309-3	chr15	59485802	59486802	+	827.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	112104.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	29.75	15.21	24.05	10.12	12.6	12.06	19.01	12.82	15.61
Merged-chr10-85185941-3	chr10	85185438	85186438	+	827.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-884.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	32.61	37.32	44.4	42.51	43.39	45.82	46.47	58.37	20.61
Merged-chr17-27777989-2	chr17	27777453	27778453	+	827.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033279, intron 3 of 4)	ORR1D1|LTR|ERVL-MaLR	42589.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	11.44	0.0	9.25	8.1	7.93	3.22	7.39	12.38	7.49
Merged-chr4-124990485-1	chr4	124989985	124990985	+	827.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138683, intron 1 of 5)	intron (NM_138683, intron 1 of 5)	4055.0	NM_138683	192199.0	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	13.16	4.15	16.65	16.87	7.0	6.43	5.28	3.54	9.37
Merged-chr16-94602782-1	chr16	94602282	94603282	+	827.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-8637.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	102.4	115.66	70.3	113.35	103.56	101.28	67.6	107.45	54.96
Merged-chr1-182951502-2	chr1	182951008	182952008	+	827.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3280.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	6.29	3.23	5.55	5.4	2.33	1.61	3.17	0.88	0.62
Merged-chr16-21198756-2	chr16	21198238	21199238	+	827.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6057.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	5.72	3.23	7.4	10.12	4.2	2.41	4.22	1.77	5.0
Merged-chr17-45766647-3	chr17	45766153	45767153	+	827.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	32147.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	24.6	14.75	6.47	29.69	38.25	34.56	20.07	8.84	18.11
Merged-chr1-92708419-3	chr1	92707917	92708917	+	827.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-59576.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	2.29	2.3	5.55	6.07	6.06	0.0	3.17	1.33	7.49
Merged-chr2-59616657-3	chr2	59616152	59617152	+	827.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	4610.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	82.95	69.58	48.1	91.76	76.97	73.95	78.16	79.59	30.6
Merged-chr10-76346262-2	chr10	76345751	76346751	+	827.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081419)	promoter-TSS (NM_001081419)	-960.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	12.01	13.36	14.8	24.29	20.53	14.47	25.35	21.22	8.74
Merged-chr14-60912025-2	chr14	60911526	60912526	+	827.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125961.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	2.86	5.53	0.0	8.77	6.06	8.84	10.56	6.19	18.11
Merged-chr13-64439215-3	chr13	64438714	64439714	+	827.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053180, exon 8 of 8)	3' UTR (NM_053180, exon 8 of 8)	6661.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.0	4.61	7.4	5.4	0.93	1.61	2.11	0.88	1.25
Merged-chr13-52574482-3	chr13	52573977	52574977	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1252.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	66.93	54.83	59.2	58.03	51.78	63.5	46.47	44.66	46.84
Merged-chr4-150882794-3	chr4	150882291	150883291	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	27130.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	9.72	6.91	7.4	13.49	8.4	15.27	9.51	4.42	10.62
Merged-chr3-8729133-3	chr3	8728622	8729622	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62084.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.0	4.61	0.0	8.1	5.6	1.61	7.39	3.54	11.24
Merged-chr3-115661239-3	chr3	115660732	115661732	+	827.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53823.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.14	2.76	1.85	5.4	0.0	3.22	3.17	3.98	0.0
Merged-chr19-36818934-1	chr19	36818434	36819434	+	827.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15298.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	13.16	15.21	11.1	36.43	26.12	12.86	43.3	34.93	24.98
Merged-chr14-44989238-3	chr14	44988628	44989628	+	827.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008964, exon 1 of 2)	exon (NM_008964, exon 1 of 2)	1017.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	173.33	249.75	153.54	126.85	165.61	154.33	179.55	206.93	124.28
Merged-chr4-115825447-3	chr4	115824940	115825940	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-2652.0	NM_175308	100465.0	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	3.43	4.61	7.4	16.87	10.26	1.61	7.39	7.96	12.49
Merged-chr11-69118860-3	chr11	69118369	69119369	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1584.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	28.03	21.66	21.27	24.29	19.59	20.09	16.9	26.53	9.99
Merged-chr2-101830756-3	chr2	101830257	101831257	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	8223.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	5.72	3.69	5.55	3.37	0.93	12.06	9.51	2.21	5.0
Merged-chr2-155135278-3	chr2	155134782	155135782	+	827.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	RSINE1|SINE|B4	1801.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	143.59	129.02	85.1	115.38	62.51	80.38	191.17	185.71	57.46
Merged-chr14-14065014-2	chr14	14064505	14065505	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52514.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	10.3	18.43	14.8	14.17	19.13	11.25	23.24	11.05	7.49
Merged-chr3-27226964-2	chr3	27226463	27227463	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	intron (NM_178772, intron 3 of 4)	43959.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	9.72	11.98	24.97	27.66	14.93	21.7	32.74	29.18	30.6
Merged-chr1-89643858-2	chr1	89643354	89644354	+	827.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	40038.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	105.26	94.92	61.05	112.68	110.1	77.16	97.17	98.6	54.33
Merged-chr9-48984581-2	chr9	48984082	48985082	+	827.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175482)	promoter-TSS (NM_175482)	-803.0	NM_001359739	235323.0	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	104.69	120.73	78.62	136.97	150.68	122.98	118.29	135.75	58.71
Merged-chr6-90428565-3	chr6	90428137	90429137	+	827.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173775)	promoter-TSS (NM_173775)	-157.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	9.15	2.3	5.55	8.1	6.53	11.25	4.22	2.21	1.25
Merged-chr1-155322365-3	chr1	155321862	155322862	+	827.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 7 of 14)	intron (NM_011273, intron 7 of 14)	95082.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.01	8.75	7.4	11.47	12.6	5.63	9.51	9.73	9.99
Merged-chr13-74004380-3	chr13	74003889	74004889	+	827.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-5030.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	8.58	3.69	7.4	12.14	9.8	4.82	4.22	0.88	2.5
Merged-chr7-29276932-1	chr7	29276432	29277432	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011464, intron 1 of 6)	intron (NM_011464, intron 1 of 6)	5045.0	NM_001082548	20733.0	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	4.0	1.84	0.0	1.35	0.93	3.22	3.17	0.44	4.37
Merged-chr17-21422763-1	chr17	21422263	21423263	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011760)	promoter-TSS (NM_011760)	-464.0	NM_011760	22712.0	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	12.59	13.36	11.1	10.12	10.73	12.06	9.51	9.73	5.62
Merged-chr15-34342825-1	chr15	34342325	34343325	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	15047.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	6.86	3.69	3.7	2.7	7.0	2.41	3.17	2.21	5.0
Merged-chr15-99009001-1	chr15	99008501	99009501	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20890.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	2.86	1.84	4.62	13.49	8.4	17.68	8.45	11.05	9.37
Merged-chr4-129809600-1	chr4	129809100	129810100	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10879.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	36.04	47.46	51.8	45.21	40.59	51.44	186.94	167.14	97.43
Merged-chr1-144300840-3	chr1	144300334	144301334	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-51730.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	18.88	25.8	20.35	30.36	12.13	19.29	22.18	19.01	11.24
Merged-chr2-58130233-1	chr2	58129733	58130733	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_139200, exon 8 of 8)	3' UTR (NM_139200, exon 8 of 8)	29889.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	6.29	6.45	5.55	11.47	3.73	6.43	4.22	7.96	3.75
Merged-chr1-55086509-1	chr1	55086009	55087009	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356512, intron 2 of 11)	intron (NM_001356512, intron 2 of 11)	1423.0	NM_010477	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	20.02	30.41	15.72	38.46	31.26	32.15	28.52	30.95	12.49
Merged-chr2-129369424-1	chr2	129368924	129369924	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-478.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	22.31	25.34	32.37	38.46	20.53	42.6	35.91	38.47	33.1
Merged-chr10-53443124-1	chr10	53442624	53443624	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33242.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.57	1.84	14.8	8.1	5.13	16.08	1.06	2.65	0.0
Merged-chr9-89989030-1	chr9	89988530	89989530	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357743, intron 13 of 26)	intron (NM_001357743, intron 13 of 26)	-65237.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	6.29	5.53	9.25	5.4	3.27	12.86	9.51	4.86	10.62
Merged-chr3-79248267-1	chr3	79247767	79248767	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045502, exon 2 of 3)	non-coding (NR_045502, exon 2 of 3)	35348.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	6.86	5.99	0.92	8.77	10.26	16.08	10.56	7.96	19.98
Merged-chr10-39387220-1	chr10	39386720	39387720	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	17421.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.0	9.68	7.4	16.19	11.66	8.04	3.17	5.31	1.25
Merged-chr10-93366285-2	chr10	93365729	93366729	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30018.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	51.48	74.19	54.57	65.45	58.31	81.99	4.22	3.98	2.5
Merged-chr7-49497088-1	chr7	49496588	49497588	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 11 of 37)	intron (NM_175272, intron 11 of 37)	139747.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.57	2.76	3.7	3.37	1.4	1.61	4.22	0.0	0.0
Merged-chr5-99632950-3	chr5	99632438	99633438	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	96122.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	13.16	11.52	3.7	12.14	7.93	7.23	11.62	9.29	5.0
Merged-chr10-75059494-1	chr10	75058994	75059994	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	4.0	1.38	7.4	5.4	0.93	3.22	2.11	0.44	1.25
Merged-chr6-97803852-3	chr6	97803355	97804355	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3203.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	61.78	61.75	40.7	43.18	41.99	58.68	80.27	55.71	40.59
Merged-chr5-140701885-1	chr5	140701385	140702385	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347517, intron 1 of 22)	intron (NM_001347517, intron 1 of 22)	493.0	NM_028833	74239.0	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	60.07	32.25	43.47	45.88	36.85	31.35	45.42	28.74	18.11
Merged-chr2-103058406-1	chr2	103057906	103058906	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 2 of 10)	intron (NM_175094, intron 2 of 10)	15107.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	10.3	19.81	19.42	14.84	8.86	13.66	8.45	8.4	13.74
Merged-chr3-30727406-1	chr3	30726906	30727906	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-18887.0	NR_028060	75953.0	Mm.308084	NM_029489	ENSMUSG00000051860	Samd7	4930597A01Rik	sterile alpha motif domain containing 7	protein-coding	5.15	5.07	9.25	3.37	0.93	1.61	1.06	0.88	3.75
Merged-chr2-10010422-1	chr2	10009922	10010922	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	38187.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	9.72	3.23	0.0	4.72	5.13	0.0	4.22	1.77	3.75
Merged-chr4-6388700-2	chr4	6388199	6389199	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	23019.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	10.3	21.2	18.5	9.45	20.06	13.66	26.4	38.91	19.36
Merged-chr6-33962798-1	chr6	33962298	33963298	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-66650.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	15.45	6.45	12.02	10.8	3.73	9.65	12.67	13.71	16.86
Merged-chr16-93005681-3	chr16	93005164	93006164	+	827.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179590.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	5.15	3.23	1.85	4.05	5.13	3.22	3.17	5.31	2.5
Merged-chr14-22814850-1	chr14	22814350	22815350	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-272052.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.29	6.45	3.7	6.07	7.93	5.63	2.11	8.84	9.99
Merged-chr7-48938406-1	chr7	48937906	48938906	+	827.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20667.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	11.44	3.69	3.7	4.72	8.4	1.61	1.06	0.0	1.25
Merged-chr18-34181347-1	chr18	34180847	34181847	+	827.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39637.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	2.29	5.07	9.25	5.4	4.2	1.61	14.79	18.57	26.23
Merged-chr8-71485958-3	chr8	71485452	71486452	+	826.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001164679, exon 1 of 17)	5' UTR (NM_001164679, exon 1 of 17)	115.0	NM_001164679	382014.0	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	16.02	8.75	33.3	12.14	13.06	25.72	13.73	10.61	18.74
Merged-chr16-91399131-3	chr16	91398629	91399629	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347258, intron 7 of 7)	intron (NM_001347258, intron 7 of 7)	-7106.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	333.51	263.11	209.04	344.11	253.78	225.86	270.38	336.05	167.37
Merged-chr1-87960250-3	chr1	87959751	87960751	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 19 of 27)	intron (NM_001033291, intron 19 of 27)	48300.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	35.47	34.1	24.05	56.0	26.59	33.76	22.18	15.92	24.98
Merged-chr3-40746460-3	chr3	40745961	40746961	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011020, intron 1 of 18)	intron (NM_011020, intron 1 of 18)	848.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	18.31	15.67	10.17	33.74	19.59	15.27	30.63	28.3	13.12
Merged-chr4-12419450-3	chr4	12418952	12419952	+	826.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247437.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	8.58	11.98	10.17	2.7	3.73	6.43	5.28	7.52	2.5
Merged-chr4-3651727-2	chr4	3651231	3652231	+	826.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4775.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	5.72	7.37	12.95	10.8	9.33	16.88	10.56	5.75	9.99
Merged-chr4-89458769-3	chr4	89458262	89459262	+	826.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-147730.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	10.3	27.65	8.32	17.54	23.33	24.11	22.18	23.43	29.98
Merged-chr13-81371258-3	chr13	81370757	81371757	+	826.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 83 of 89)	Lx6|LINE|L1	261887.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	14.3	6.45	18.5	6.75	5.13	17.68	9.51	12.82	9.99
Merged-chr19-21111992-3	chr19	21111384	21112384	+	826.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7174.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	6.86	7.37	1.85	8.77	8.86	3.22	7.39	10.17	8.74
Merged-chr4-109214227-2	chr4	109213722	109214722	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4191.0	NM_001285895	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	10.3	11.98	7.4	4.05	10.26	12.86	8.45	5.75	0.62
Merged-chr11-32881779-2	chr11	32881269	32882269	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57175.0	NM_027050	69351.0	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	10.87	7.37	3.7	7.42	4.2	9.65	0.0	1.77	0.0
Merged-chr12-5375797-2	chr12	5375281	5376281	+	826.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015579)	promoter-TSS (NR_015579)	-99.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.29	0.46	1.85	3.37	1.4	0.8	0.0	0.0	1.25
Merged-chr4-137724309-3	chr4	137723801	137724801	+	826.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138592)	promoter-TSS (NR_138592)	-160.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	31.46	23.04	35.15	39.13	41.52	43.4	70.76	58.81	44.97
Merged-chr11-8701015-1	chr11	8700515	8701515	+	826.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36480.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	5.72	10.6	3.7	12.82	11.2	12.86	25.35	30.95	28.73
Merged-chr1-172463528-3	chr1	172463027	172464027	+	826.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11833.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	15.45	6.91	7.4	18.22	7.93	11.25	20.07	19.46	10.62
Merged-chrX-47925038-3	chrX	47924542	47925542	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 4 of 23)	intron (NM_177215, intron 4 of 23)	12586.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	12.59	13.82	9.25	14.84	8.86	27.33	19.01	31.39	9.99
Merged-chr8-70635620-3	chr8	70635108	70636108	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3152.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	126.42	103.68	67.52	89.74	50.38	49.83	65.48	66.33	52.46
Merged-chr17-67260189-3	chr17	67259677	67260677	+	826.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	94282.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	46.91	54.37	29.6	34.41	21.93	24.92	118.29	145.92	81.81
Merged-chr2-103579005-3	chr2	103578501	103579501	+	826.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	L2b|LINE|L2	12691.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	3.43	6.45	11.1	5.4	1.87	4.82	0.0	2.65	2.5
Merged-chr5-98055004-1	chr5	98054504	98055504	+	826.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24042.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	2.29	1.84	7.4	2.7	1.4	0.0	8.45	1.77	5.0
Merged-chr2-129895516-2	chr2	129895012	129896012	+	826.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94053.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	12.59	9.22	12.95	49.93	38.72	75.56	8.45	7.07	10.62
Merged-chr16-35922517-3	chr16	35922026	35923026	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-15944.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	26.89	19.35	24.97	17.54	13.06	31.35	38.02	27.86	11.24
Merged-chr13-47277464-1	chr13	47276964	47277964	+	826.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83461.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	13.16	24.42	14.8	23.62	18.19	9.65	6.34	9.29	6.25
Merged-chr4-55488858-3	chr4	55488381	55489381	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B|LTR|ERVL	43594.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.58	5.07	1.85	11.47	10.73	2.41	12.67	12.82	8.12
Merged-chr6-97819163-3	chr6	97818664	97819664	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	12106.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	91.53	112.43	41.62	76.92	81.64	65.91	79.21	95.51	45.59
Merged-chr1-58857060-3	chr1	58856569	58857569	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54567.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	7.44	1.84	5.55	5.4	3.73	0.0	4.22	3.98	4.37
Merged-chr8-108715379-1	chr8	108714879	108715879	+	826.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	CpG	735.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	79.52	56.22	67.52	65.45	36.39	60.28	50.7	28.74	14.36
Merged-chr10-127534476-3	chr10	127533964	127534964	+	826.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183297)	promoter-TSS (NM_183297)	95.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.72	3.23	2.77	3.37	5.6	0.0	4.22	0.0	0.0
Merged-chr5-114689680-5	chr5	114689163	114690163	+	826.646667	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	1272.0	NM_019821	56356.0	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	128.71	113.35	80.47	122.12	108.7	139.06	149.98	153.43	76.19
Merged-chr1-191110595-2	chr1	191110109	191111109	+	826.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12195.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	156.74	188.0	156.32	137.64	132.49	127.0	101.39	121.6	112.42
Merged-chr18-88770680-3	chr18	88770173	88771173	+	826.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123534.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	10.87	13.82	13.87	11.47	14.93	4.82	11.62	7.96	9.37
Merged-chrUn_JH584304-929-1	chrUn_JH584304	429	1429	+	826.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	58760.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	58.09	32.28	0.0
Merged-chr12-81910676-1	chr12	81910176	81911176	+	826.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 3 of 35)	intron (NM_018814, intron 3 of 35)	50646.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	3.43	4.15	2.77	2.7	2.33	10.45	1.06	3.54	3.75
Merged-chr3-95667655-2	chr3	95667163	95668163	+	826.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	8942.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	192.21	171.41	163.72	202.42	157.21	155.93	190.11	248.06	121.78
Merged-chr13-37356226-3	chr13	37355722	37356722	+	826.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	10877.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	124.14	156.67	140.59	159.23	95.17	118.16	110.9	153.43	124.28
Merged-chr10-128455488-3	chr10	128454989	128455989	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3191.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	9.15	6.45	0.0	11.47	5.13	2.41	10.56	9.73	5.0
Merged-chr16-43409330-3	chr16	43408835	43409835	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	10861.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	2.86	5.53	3.7	7.42	3.73	9.65	4.22	1.33	2.5
Merged-chr9-75553895-3	chr9	75553395	75554395	+	826.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	B1F|SINE|Alu	5762.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	9.72	6.91	4.62	4.72	5.13	2.41	10.56	11.05	12.49
Merged-chr8-126803811-3	chr8	126803296	126804296	+	826.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45224.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	220.81	148.83	117.47	215.23	151.62	134.23	142.59	161.83	92.43
Merged-chr4-72437583-1	chr4	72437083	72438083	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	236339.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	6.86	6.91	5.55	4.05	5.13	1.61	2.11	2.65	7.49
Merged-chr15-84985927-3	chr15	84985373	84986373	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	2098.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	38.9	27.19	19.42	35.76	28.92	11.25	45.42	40.24	23.11
Merged-chr9-106261300-2	chr9	106260790	106261790	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13336.0	NM_020559	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	1.14	0.92	0.0	3.37	1.87	3.22	11.62	6.19	3.12
Merged-chr1-36253008-3	chr1	36252511	36253511	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8709.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	2.86	1.84	1.85	5.4	5.6	9.65	3.17	3.54	2.5
Merged-chr12-30912244-2	chr12	30911749	30912749	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021330)	promoter-TSS (NM_021330)	580.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	9.72	5.99	3.7	12.14	9.8	11.25	14.79	7.96	4.37
Merged-chr7-137420742-3	chr7	137420239	137421239	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-9983.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	12.01	17.51	17.57	20.24	8.86	23.31	22.18	22.55	15.61
Merged-chr4-3624155-2	chr4	3623644	3624644	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32362.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.0	7.83	9.25	3.37	7.46	3.22	6.34	7.07	11.87
Merged-chr16-84713262-2	chr16	84712756	84713756	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029565)	promoter-TSS (NR_029565)	233.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	4.0	2.3	3.7	3.37	4.67	2.41	8.45	3.98	1.25
Merged-chr13-83715209-3	chr13	83714676	83715676	+	826.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	2.29	0.92	3.7	2.02	2.33	1.61	3.17	0.0	1.25
Merged-chr4-46041905-1	chr4	46041405	46042405	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 1 of 9)	intron (NM_021883, intron 1 of 9)	2683.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.0	1.84	0.0	6.07	2.33	0.0	0.0	0.44	0.0
Merged-chr8-88639078-1	chr8	88638578	88639578	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2950.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	6.86	2.76	7.4	0.67	2.8	16.88	6.34	0.44	13.12
Merged-chr6-99544120-1	chr6	99543620	99544620	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23127.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.72	4.15	0.92	4.05	0.93	6.43	11.62	1.33	0.0
Merged-chr17-43055510-1	chr17	43055010	43056010	+	826.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	B1_Mus2|SINE|Alu	38955.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	24.03	24.42	12.02	11.47	18.66	31.35	7.39	2.65	2.5
Merged-chr3-59202402-3	chr3	59201849	59202849	+	826.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-7245.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	38.33	45.16	30.52	23.62	15.86	34.56	15.84	20.78	25.61
Merged-chr12-85487934-4	chr12	85487416	85488416	+	826.424988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14026.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	77.8	70.5	83.25	57.35	33.59	49.83	62.31	66.77	64.95
Merged-chr10-100741830-3	chr10	100741323	100742323	+	826.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152765)	promoter-TSS (NR_152765)	-188.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	10.3	6.45	8.32	10.12	2.8	3.22	5.28	6.63	7.49
Merged-chr10-20915823-3	chr10	20915343	20916343	+	826.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36704.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	6.29	11.06	7.4	8.1	7.46	16.08	6.34	4.86	0.62
Merged-chr11-79210140-2	chr11	79209667	79210667	+	826.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32857.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	41.19	31.33	13.87	31.04	22.86	15.27	59.15	60.58	21.23
Merged-chr10-8885287-2	chr10	8884778	8885778	+	826.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	792.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	279.16	372.31	205.34	324.54	358.74	245.96	313.69	412.54	167.37
Merged-chr18-65678536-1	chr18	65678036	65679036	+	826.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-19732.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	116.7	112.43	73.07	104.58	69.98	53.85	104.56	81.8	29.98
Merged-chr17-23538940-3	chr17	23538420	23539420	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11879.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	8.01	4.61	7.4	2.02	3.27	4.82	3.17	1.77	2.5
Merged-chr6-133960868-3	chr6	133960374	133961374	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74826.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.15	7.83	1.85	6.07	1.4	0.0	2.11	3.54	3.75
Merged-chr6-50245216-1	chr6	50244716	50245716	+	826.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018769, intron 3 of 9)	intron (NM_018769, intron 3 of 9)	16553.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	3.43	5.53	9.25	3.37	2.8	4.02	6.34	1.77	12.49
Merged-chr6-97107031-3	chr6	97106542	97107542	+	826.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41841.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	4.0	2.3	6.47	1.35	7.46	4.02	4.22	1.77	1.25
Merged-chr13-34345136-5	chr13	34344590	34345590	+	826.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033167)	promoter-TSS (NM_001033167)	92.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	57.21	25.8	36.07	63.42	27.06	45.82	34.85	16.36	13.74
Merged-chr5-96794432-3	chr5	96793929	96794929	+	826.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 1 of 12)	intron (NM_013470, intron 1 of 12)	1044.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	17.16	33.64	39.77	29.69	20.99	51.44	36.97	34.93	23.11
Merged-chr2-51372934-3	chr2	51372440	51373440	+	826.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64960.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	13.73	13.36	7.4	21.59	19.59	20.9	11.62	8.4	10.62
Merged-chrX-102187346-1	chrX	102186846	102187846	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009094, intron 4 of 6)	intron (NM_009094, intron 4 of 6)	2045.0	NM_009094	20102.0	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	13.16	15.21	7.4	14.84	6.06	1.61	10.56	8.4	6.87
Merged-chr8-26917784-2	chr8	26917270	26918270	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-59566.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	3.43	6.91	7.4	6.07	3.27	12.06	5.28	4.86	7.49
Merged-chr1-138955673-1	chr1	138955173	138956173	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8036.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	5.72	1.38	3.7	4.05	1.4	4.82	4.22	1.77	4.37
Merged-chr1-64717633-2	chr1	64717120	64718120	+	826.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097644, intron 7 of 9)	intron (NM_001097644, intron 7 of 9)	20130.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	1.72	5.53	4.62	0.67	3.27	5.63	1.06	2.21	2.5
Merged-chr11-106033573-1	chr11	106033073	106034073	+	826.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037712, intron 12 of 12)	intron (NM_001037712, intron 12 of 12)	-3299.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.0	0.46	0.0	2.02	0.47	0.0	48.58	32.28	72.45
Merged-chr12-84004734-3	chr12	84004215	84005215	+	826.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-4787.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	123.56	109.21	41.62	102.56	110.56	79.58	61.26	63.23	29.98
Merged-chr11-117121431-3	chr11	117120927	117121927	+	826.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	6255.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	48.05	34.56	40.7	62.75	45.72	53.05	36.97	55.27	31.23
Merged-chr4-155683874-3	chr4	155683372	155684372	+	826.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10470.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	10.87	7.83	3.7	15.52	19.59	16.88	3.17	5.31	3.75
Merged-chr2-158137989-3	chr2	158137515	158138515	+	826.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	8377.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	22.31	13.82	24.05	20.92	13.06	36.97	46.47	20.78	36.85
Merged-chr5-144935425-3	chr5	144934912	144935912	+	826.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038627, intron 1 of 17)	intron (NM_001038627, intron 1 of 17)	30418.0	NM_001038627	75788.0	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	22.31	5.07	11.1	6.75	5.13	11.25	17.96	7.96	7.49
Merged-chr5-148708216-3	chr5	148707721	148708721	+	826.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-33619.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	6.29	4.15	7.4	5.4	5.13	4.82	22.18	15.03	8.12
Merged-chr3-57075291-1	chr3	57074791	57075791	+	826.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	226697.0	NM_008536	17112.0	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	4.58	7.83	5.55	2.02	0.0	1.61	0.0	3.98	3.75
Merged-chr8-14651632-2	chr8	14651109	14652109	+	826.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-236927.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	5.72	3.69	1.85	6.07	5.13	4.82	23.24	9.29	2.5
Merged-chr16-38132626-5	chr16	38132167	38133167	+	826.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-43407.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	171.62	181.55	110.99	115.38	132.95	98.87	114.07	113.64	84.94
Merged-chr4-155488944-3	chr4	155488435	155489435	+	826.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2426.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	89.81	107.82	162.79	64.1	107.3	131.82	96.11	128.67	93.05
Merged-chr12-102246071-2	chr12	102245568	102246568	+	826.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172152, intron 12 of 16)	intron (NM_172152, intron 12 of 16)	-37006.0	NM_177620	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.72	4.61	18.5	4.72	3.73	7.23	8.45	3.54	3.12
Merged-chr5-121996940-3	chr5	121996454	121997454	+	826.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	L1MC4a|LINE|L1	50871.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	5.72	2.3	1.85	8.77	7.93	1.61	5.28	3.54	7.49
Merged-chr11-75073159-3	chr11	75072658	75073658	+	826.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	RSINE1|SINE|B4	-7167.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	49.77	37.32	41.62	32.39	30.79	34.56	30.63	23.43	18.74
Merged-chr10-77271074-3	chr10	77270576	77271576	+	826.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11776.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	12.59	9.22	12.02	5.4	3.27	14.47	14.79	4.42	4.37
Merged-chr6-146209168-3	chr6	146208680	146209680	+	826.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 45 of 56)	intron (NM_019923, intron 45 of 56)	275058.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	8.58	6.45	1.85	16.87	8.4	11.25	6.34	8.4	8.12
Merged-chr13-37561064-3	chr13	37560569	37561569	+	826.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215724.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	8.01	5.07	11.1	12.82	3.27	3.22	7.39	4.42	8.74
Merged-chr10-99269451-1	chr10	99268951	99269951	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6220.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	53.77	47.0	42.55	46.56	25.19	50.64	42.25	37.58	41.84
Merged-chr14-25313025-1	chr14	25312525	25313525	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-146160.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.43	2.76	1.85	2.02	2.33	1.61	5.28	1.33	1.25
Merged-chr4-120935972-1	chr4	120935472	120936472	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 3 of 5)	intron (NM_001005788, intron 3 of 5)	-10967.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	8.58	5.07	17.57	14.17	5.13	14.47	8.45	4.86	1.87
Merged-chr14-62329717-1	chr14	62329217	62330217	+	826.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2351.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	7.44	5.99	5.55	8.77	6.53	11.25	27.46	15.92	5.0
Merged-chr11-34048192-1	chr11	34047692	34048692	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	1264.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	225.39	254.35	188.69	186.9	184.74	197.73	268.27	237.89	148.01
Merged-chr19-11820008-3	chr19	11819516	11820516	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152220)	promoter-TSS (NM_152220)	-613.0	NR_153434	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	28.6	23.04	10.17	31.04	12.13	11.25	40.14	42.45	26.23
Merged-chr10-94336310-1	chr10	94335810	94336810	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	24361.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	10.3	8.75	14.8	14.84	13.06	12.86	5.28	6.19	1.25
Merged-chr3-86103909-1	chr3	86103409	86104409	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082414, intron 4 of 14)	RLTR20A4|LTR|ERVK	19475.0	NM_001082414	27059.0	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	3.43	1.38	0.0	17.54	9.8	12.06	11.62	9.29	5.0
Merged-chr3-31408999-1	chr3	31408499	31409499	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98680.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.29	8.29	0.0	14.84	16.33	12.86	24.29	11.05	6.25
Merged-chr8-119843607-1	chr8	119843107	119844107	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	7.44	3.69	5.55	6.75	2.8	1.61	6.34	2.65	5.0
Merged-chr5-115160930-1	chr5	115160430	115161430	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2754.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	18.31	20.74	23.12	29.69	15.39	20.9	24.29	15.03	10.62
Merged-chr14-51250508-1	chr14	51250008	51251008	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5604.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	20.59	21.2	11.1	20.24	14.46	28.13	7.39	4.42	4.37
Merged-chr10-39442212-1	chr10	39441712	39442712	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	L2b|LINE|L2	72413.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	24.6	18.43	26.82	30.36	32.66	34.56	47.53	29.63	12.49
Merged-chr13-24036579-1	chr13	24036079	24037079	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311122, exon 33 of 38)	exon (NM_001311122, exon 33 of 38)	-45365.0	NM_145399	214189.0	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	15.45	7.83	13.87	11.47	8.86	3.22	5.28	1.77	1.25
Merged-chr4-138250224-1	chr4	138249724	138250724	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099631)	promoter-TSS (NM_001099631)	-187.0	NM_001099631	230863.0	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	1.72	2.76	0.0	6.75	0.0	0.0	4.22	1.33	2.5
Merged-chr5-45384481-1	chr5	45383981	45384981	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	RMER6B|LTR|ERVK	39919.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	6.86	12.44	9.25	11.47	8.86	25.72	0.0	0.44	6.87
Merged-chr13-55985624-1	chr13	55985124	55986124	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149926.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	4.0	2.76	1.85	8.1	1.4	0.0	1.06	1.77	0.0
Merged-chr5-36557752-1	chr5	36557252	36558252	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	24645.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	32.04	59.44	40.7	43.18	31.26	59.48	12.67	12.38	12.49
Merged-chr7-127215482-3	chr7	127214989	127215989	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017461, intron 8 of 10)	intron (NM_017461, intron 8 of 10)	2956.0	NM_017461	54204.0	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	6.29	2.3	3.7	10.8	1.87	0.0	9.51	2.65	2.5
Merged-chr7-100943489-3	chr7	100942976	100943976	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	LTR108c_Mam|LTR|ERVL	-11315.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	72.08	59.9	44.4	58.7	38.25	27.33	39.08	43.77	23.73
Merged-chr15-91186507-3	chr15	91186066	91187066	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358967, intron 2 of 9)	intron (NM_001358967, intron 2 of 9)	5441.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	67.5	61.75	37.92	85.01	68.11	79.58	133.08	188.81	59.33
Merged-chr4-109204560-1	chr4	109204060	109205060	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2288.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	22.88	12.9	34.22	20.92	14.46	42.6	10.56	9.73	15.61
Merged-chr6-120085243-3	chr6	120084741	120085741	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8139.0	NM_016718	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	9.15	4.15	0.0	7.42	8.86	10.45	12.67	5.75	5.62
Merged-chr15-37787641-2	chr15	37787137	37788137	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359844, intron 1 of 7)	ORR1E|LTR|ERVL-MaLR	4363.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	4.0	2.3	0.92	5.4	2.33	0.8	2.11	2.65	1.25
Merged-chr17-7420350-1	chr17	7419850	7420850	+	826.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35045.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	1.14	2.76	0.0	2.02	0.0	1.61	0.0	0.0	0.0
Merged-chr8-108895183-1	chr8	108894683	108895683	+	826.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-41677.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	35.47	21.2	12.02	57.35	29.86	36.17	40.14	28.3	8.12
Merged-chr1-7394266-3	chr1	7393762	7394762	+	826.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	305342.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	2.29	5.07	0.0	2.7	1.4	1.61	2.11	3.54	2.5
Merged-chr3-32400101-3	chr3	32399574	32400574	+	825.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34409.0	NM_009517	22401.0	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	25.74	32.72	26.82	21.59	16.79	24.92	21.12	22.55	21.23
Merged-chr7-120901865-3	chr7	120901363	120902363	+	825.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 17 of 17)	ORR1E|LTR|ERVL-MaLR	-15881.0	NM_025298	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	13.16	8.75	5.55	18.89	11.66	17.68	8.45	11.5	9.99
Merged-chr13-31506997-2	chr13	31506496	31507496	+	825.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51174.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	3.43	4.61	0.92	6.07	1.87	0.0	5.28	1.33	4.37
Merged-chrX-11665840-3	chrX	11665340	11666340	+	825.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	338018.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	10.87	9.68	10.17	8.1	4.2	3.22	9.51	2.65	3.75
Merged-chr7-97383658-3	chr7	97383176	97384176	+	825.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199035, intron 7 of 12)	intron (NM_199035, intron 7 of 12)	12059.0	NM_199035	381903.0	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	13.16	13.36	26.82	14.84	8.86	6.43	12.67	7.52	9.99
Merged-chr17-88545467-3	chr17	88544994	88545994	+	825.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028658, intron 3 of 21)	intron (NM_028658, intron 3 of 21)	15370.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	16.59	32.25	22.2	22.94	26.59	27.33	14.79	18.57	17.49
Merged-chr3-52391262-2	chr3	52390744	52391744	+	825.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	122907.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.0	4.15	0.0	5.4	1.87	3.22	5.28	6.63	6.25
Merged-chr19-23142682-5	chr19	23142227	23143227	+	825.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1501.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	9.72	13.36	8.32	46.56	48.52	33.76	77.1	49.96	36.85
Merged-chr11-86602360-3	chr11	86601852	86602852	+	825.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 9 of 11)	intron (NM_001356531, intron 9 of 11)	-18194.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	30.89	42.85	45.32	27.66	33.59	53.05	63.37	45.54	36.85
Merged-chr3-10297400-2	chr3	10296949	10297949	+	825.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	3734.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	14.3	5.07	3.7	5.4	1.4	1.61	7.39	4.42	6.25
Merged-chr3-152259652-3	chr3	152259148	152260148	+	825.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	6147.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	2.29	2.76	3.7	2.7	1.87	1.61	1.06	1.77	3.12
Merged-chr11-111159500-3	chr11	111159012	111160012	+	825.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93348.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	20.59	28.57	31.45	15.52	24.26	12.86	26.4	35.82	9.99
Merged-chr10-40069464-1	chr10	40068964	40069964	+	825.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-44196.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	88.1	113.35	64.75	107.28	109.16	94.85	70.76	104.35	53.71
Merged-chr10-21611230-3	chr10	21610733	21611733	+	825.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	18088.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	14.3	11.98	5.55	30.36	18.19	3.22	22.18	21.67	6.87
Merged-chr17-65853883-3	chr17	65853386	65854386	+	825.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198949, intron 7 of 9)	intron (NM_001198949, intron 7 of 9)	31037.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	49.77	59.44	57.35	38.46	44.32	46.62	47.53	37.58	27.48
Merged-chr6-72109727-3	chr6	72109228	72110228	+	825.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	12120.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	49.77	82.48	70.3	42.51	53.18	62.7	86.61	81.8	43.09
Merged-chr14-25745882-3	chr14	25745365	25746365	+	825.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	22991.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	49.77	52.99	65.67	70.17	47.12	63.5	53.87	56.6	30.6
Merged-chr18-39138023-2	chr18	39137526	39138526	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 10 of 21)	intron (NM_001361073, intron 10 of 21)	144881.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	76.66	122.11	61.05	98.51	97.03	89.22	94.0	125.13	50.59
Merged-chr3-135699750-2	chr3	135699282	135700282	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8235.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	4.58	6.91	9.25	7.42	7.46	4.82	3.17	5.31	5.0
Merged-chr3-96747038-2	chr3	96746520	96747520	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	19409.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	13.73	11.06	7.4	12.82	14.93	15.27	23.24	15.48	16.24
Merged-chr5-90731659-1	chr5	90731159	90732159	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27639.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	2.86	7.83	7.4	10.8	6.06	6.43	2.11	1.77	1.87
Merged-chr2-145161273-2	chr2	145160780	145161780	+	825.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6495.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	2.29	2.76	0.0	2.02	2.33	8.04	1.06	3.1	0.0
Merged-chr4-128670780-3	chr4	128670295	128671295	+	825.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	16093.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	59.49	40.55	25.9	72.87	62.98	36.97	59.15	45.99	21.23
Merged-chr7-99130227-3	chr7	99129732	99130732	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	10912.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	52.06	32.25	36.07	29.69	16.33	29.74	80.27	66.77	41.84
Merged-chrX-108833721-3	chrX	108833258	108834258	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015493)	promoter-TSS (NR_015493)	597.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	113.84	99.99	88.8	87.71	68.11	76.36	97.17	101.26	73.07
Merged-chr3-27691622-3	chr3	27691137	27692137	+	825.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18815.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	31.46	28.57	22.2	47.9	49.92	30.54	33.8	36.7	19.98
Merged-chr3-144617940-2	chr3	144617453	144618453	+	825.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47526.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	5.15	4.61	9.25	11.47	4.2	8.84	7.39	4.42	1.25
Merged-chr14-120398449-3	chr14	120397945	120398945	+	825.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 7 of 7)	intron (NM_001360380, intron 7 of 7)	-80016.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.0	4.15	3.7	4.05	3.73	3.22	5.28	4.42	2.5
Merged-chr4-53198513-2	chr4	53198025	53199025	+	825.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-38630.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	17.73	5.53	11.1	14.84	8.4	8.04	24.29	7.07	5.0
Merged-chr12-10068200-1	chr12	10067700	10068700	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-301771.0	NM_027588	70881.0	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	4.58	3.69	7.4	7.42	8.86	4.82	3.17	2.65	1.87
Merged-chr19-46135456-3	chr19	46134944	46135944	+	825.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008852)	TTS (NM_008852)	3545.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	2.86	2.76	3.7	3.37	0.93	1.61	7.39	0.44	5.0
Merged-chr1-4870709-3	chr1	4870225	4871225	+	825.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159750, intron 2 of 9)	MTD|LTR|ERVL-MaLR	12397.0	NM_001159751	21399.0	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	27.46	35.02	57.35	23.62	12.13	29.74	34.85	33.16	36.85
Merged-chr9-60187135-1	chr9	60186635	60187635	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-45915.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	10.87	13.36	13.87	20.24	22.86	16.08	16.9	21.67	7.49
Merged-chr12-4210207-1	chr12	4209707	4210707	+	825.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138305, exon 17 of 21)	exon (NM_138305, exon 17 of 21)	23758.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	14.87	22.58	32.37	45.21	33.12	41.8	16.9	11.05	6.87
Merged-chr8-22124438-2	chr8	22123942	22124942	+	825.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177898, intron 1 of 19)	intron (NM_177898, intron 1 of 19)	625.0	NM_177898	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	3.43	4.61	4.62	8.77	2.8	2.41	1.06	3.1	1.87
Merged-chr18-53232603-2	chr18	53232132	53233132	+	825.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-13030.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.86	4.61	1.85	8.1	5.13	8.04	10.56	10.17	5.0
Merged-chr16-34000846-3	chr16	34000333	34001333	+	825.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-33795.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.72	1.84	1.85	6.75	0.47	0.0	5.28	0.88	2.5
Merged-chr2-166684236-4	chr2	166683701	166684701	+	825.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	29631.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	66.36	43.31	42.55	100.53	58.31	45.01	120.41	110.98	43.09
Merged-chr7-139984658-2	chr7	139984164	139985164	+	825.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007403, intron 19 of 23)	intron (NM_007403, intron 19 of 23)	2210.0	NR_106029	102465643.0		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	4.0	1.84	1.85	10.12	9.33	14.47	3.17	0.44	1.25
Merged-chr2-45081623-2	chr2	45081121	45082121	+	825.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	28656.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	32.04	38.71	28.67	21.59	28.92	19.29	34.85	32.28	28.73
Merged-chr14-8173831-3	chr14	8173317	8174317	+	825.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024221)	promoter-TSS (NM_024221)	-825.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	202.51	283.38	110.07	240.2	320.02	204.97	277.78	416.52	118.66
Merged-chr5-141018470-3	chr5	141017951	141018951	+	825.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17855.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	40.04	22.12	30.52	24.29	13.53	38.58	42.25	16.36	21.23
Merged-chr5-122649466-2	chr5	122648966	122649966	+	825.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001284402)	promoter-TSS (NM_001284402)	-958.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	28.03	15.67	18.5	26.31	14.46	27.33	4.22	1.77	8.74
Merged-chr16-33914326-2	chr16	33913820	33914820	+	825.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	52718.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	34.9	31.79	23.12	57.35	36.39	56.27	32.74	34.49	44.34
Merged-chr2-143862849-2	chr2	143862344	143863344	+	825.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009751, exon 1 of 8)	exon (NM_009751, exon 1 of 8)	329.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	8.58	1.84	0.0	8.1	0.93	3.22	9.51	3.1	3.75
Merged-chr6-50312810-2	chr6	50312314	50313314	+	825.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027881, intron 15 of 21)	intron (NM_027881, intron 15 of 21)	-51045.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	4.0	1.38	0.0	5.4	2.8	3.22	2.11	0.44	0.0
Merged-chr4-10978189-3	chr4	10977680	10978680	+	825.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29439.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	25.74	22.58	26.82	14.84	16.33	35.37	49.64	43.33	34.97
Merged-chr8-45344484-3	chr8	45343992	45344992	+	825.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153535, exon 10 of 14)	exon (NM_153535, exon 10 of 14)	-11296.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	9.15	3.23	7.4	5.4	2.33	0.0	7.39	5.31	5.62
Merged-chr5-123682568-3	chr5	123682089	123683089	+	825.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	1772.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	56.63	89.39	69.37	89.74	70.91	78.77	94.0	116.73	56.21
Merged-chr15-35917556-2	chr15	35917039	35918039	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 58 of 61)	intron (NM_177151, intron 58 of 61)	20707.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	14.3	9.22	16.65	6.75	3.73	7.23	8.45	6.63	11.87
Merged-chr3-103280499-2	chr3	103279976	103280976	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079830, intron 1 of 18)	CpG	1183.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	87.52	38.71	83.25	75.57	45.72	72.34	100.34	49.08	64.95
Merged-chr4-19856282-1	chr4	19855782	19856782	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37555.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	17.16	20.27	15.72	31.71	27.06	36.17	14.79	9.29	13.74
Merged-chr19-40995801-2	chr19	40995302	40996302	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1267.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	10.3	12.44	20.35	8.1	13.06	11.25	12.67	7.96	3.75
Merged-chr5-30073541-1	chr5	30073041	30074041	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033402)	promoter-TSS (NR_033402)	84.0	NR_033402	22171.0	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	15.45	21.66	5.55	15.52	14.93	22.51	9.51	16.8	11.24
Merged-chr5-112985987-1	chr5	112985487	112986487	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	MTE2b|LTR|ERVL-MaLR	29551.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	8.01	3.69	4.62	9.45	4.67	6.43	4.22	3.1	8.12
Merged-chr2-63511083-3	chr2	63510578	63511578	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64210.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	13.16	19.81	14.8	12.82	14.0	22.51	28.52	20.78	19.98
Merged-chr14-73209498-3	chr14	73209006	73210006	+	825.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009029, intron 20 of 26)	intron (NM_009029, intron 20 of 26)	-2655.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	36.61	20.27	12.95	19.57	24.26	18.49	42.25	44.66	31.85
Merged-chr8-115638395-1	chr8	115637895	115638895	+	825.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68499.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	16.59	9.68	0.0	18.22	12.13	10.45	5.28	3.98	7.49
Merged-chr9-73044879-3	chr9	73044378	73045378	+	825.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	68.0	NM_001301230	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	3.43	4.15	3.7	12.82	14.0	11.25	8.45	6.19	4.37
Merged-chr13-100601234-3	chr13	100600740	100601740	+	825.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038602, intron 3 of 6)	intron (NM_001038602, intron 3 of 6)	15704.0	NM_178410	218518.0	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	22.31	19.35	14.8	217.93	230.92	114.94	152.09	218.87	115.54
Merged-chr10-120876380-3	chr10	120875896	120876896	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	MLT1I|LTR|ERVL-MaLR	18767.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	5.72	5.53	0.0	4.05	3.27	3.22	2.11	4.42	8.74
Merged-chr4-19893987-3	chr4	19893488	19894488	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	28578.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	108.69	135.47	75.85	118.75	132.49	135.04	103.51	113.64	64.33
Merged-chr14-48131783-3	chr14	48131263	48132263	+	825.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10894.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	24.03	28.11	12.95	34.41	48.52	36.17	7.39	2.65	11.87
Merged-chr18-55357485-2	chr18	55356975	55357975	+	825.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-364884.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.29	1.84	1.85	2.02	3.27	0.0	4.22	4.42	1.25
Merged-chr10-80245070-3	chr10	80244537	80245537	+	825.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023431, exon 14 of 14)	3' UTR (NM_023431, exon 14 of 14)	-4415.0	NM_029272	75406.0	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	6.29	4.61	0.0	9.45	2.8	2.41	3.17	4.86	6.25
Merged-chr14-19706659-3	chr14	19706162	19707162	+	825.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44595.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	14.87	12.44	6.47	11.47	7.93	10.45	7.39	4.42	9.99
Merged-chr6-83640846-1	chr6	83640346	83641346	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	15270.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	42.33	41.01	38.85	39.81	20.99	37.78	32.74	24.76	13.74
Merged-chr3-9031119-1	chr3	9030619	9031619	+	825.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-26396.0	NM_001357075	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	1.72	3.69	0.0	0.67	0.93	0.0	3.17	13.27	4.37
Merged-chr16-85162986-3	chr16	85162489	85163489	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	MTEa|LTR|ERVL-MaLR	10718.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	24.03	26.26	35.15	9.45	9.8	16.08	12.67	4.86	16.24
Merged-chr2-30128981-3	chr2	30128479	30129479	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4368.0	NM_001290503	227693.0	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	14.87	4.61	7.4	10.8	3.73	12.86	12.67	5.75	4.37
Merged-chr2-102189665-1	chr2	102189165	102190165	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3205.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.57	0.46	0.0	0.0	5.6	2.41	6.34	2.65	11.24
Merged-chr11-114880774-3	chr11	114880213	114881213	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9328.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	89.24	64.97	78.62	93.79	46.65	94.85	80.27	77.38	57.46
Merged-chr6-73518109-1	chr6	73517609	73518609	+	825.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47088.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.0	1.38	2.77	2.02	2.33	4.02	1.06	3.1	3.12
Merged-chr19-32183288-3	chr19	32182798	32183798	+	825.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	L1MC4a|LINE|L1	27715.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	14.87	22.58	5.55	29.01	22.39	21.7	5.28	2.21	10.62
Merged-chrX-36870663-3	chrX	36870145	36871145	+	825.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3650.0	NM_001313696	22209.0	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	8.01	13.82	17.57	10.12	5.6	12.86	21.12	12.38	11.24
Merged-chr18-34663280-2	chr18	34662793	34663793	+	825.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11557.0	NM_178347	52563.0	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	1.72	5.07	1.85	5.4	2.8	0.0	1.06	3.54	1.25
Merged-chr17-26487382-3	chr17	26486859	26487859	+	825.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21113.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.86	6.45	11.1	6.07	4.2	12.86	4.22	7.07	2.5
Merged-chr15-77846444-3	chr15	77845952	77846952	+	825.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4277.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	8.58	3.69	1.85	4.72	1.87	3.22	7.39	9.29	2.5
Merged-chr16-36531795-2	chr16	36531293	36532293	+	825.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	30341.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	16.59	13.82	5.55	28.34	23.33	16.88	13.73	20.78	21.23
Merged-chr2-27560963-3	chr2	27560479	27561479	+	825.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45832.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	17.73	14.28	5.55	13.49	7.0	6.43	5.28	3.98	3.75
Merged-chr15-84105613-1	chr15	84105113	84106113	+	825.25	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013873, exon 1 of 7)	5' UTR (NM_013873, exon 1 of 7)	141.0	NM_013873	29859.0	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL|BR-STL-1|NST|ST4A1|Sultx3|mBR-STL	sulfotransferase family 4A, member 1	protein-coding	4.58	4.15	1.85	10.12	13.06	4.82	2.11	2.65	0.0
Merged-chr16-29527283-2	chr16	29526784	29527784	+	825.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 2 of 21)	intron (NM_001164613, intron 2 of 21)	14199.0	NM_172613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	5.15	5.99	5.55	4.05	8.86	6.43	11.62	3.54	8.12
Merged-chrX-8136070-3	chrX	8135588	8136588	+	825.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3230.0	NM_026137	73447.0	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	12.59	16.59	5.55	16.19	13.06	12.06	12.67	16.8	15.61
Merged-chr14-50939176-3	chr14	50938670	50939670	+	825.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-5133.0	NM_013632	18950.0	Mm.17932	NM_013632	ENSMUSG00000115338	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	6.86	8.75	14.8	6.75	14.93	10.45	23.24	21.67	18.74
Merged-chr11-109347764-3	chr11	109347254	109348254	+	825.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	887.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	25.74	25.34	25.9	32.39	14.46	21.7	61.26	24.76	21.23
Merged-chr18-23942404-3	chr18	23941920	23942920	+	825.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12268.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	6.29	7.83	7.4	8.1	8.86	5.63	8.45	5.31	1.87
Merged-chr16-4679165-4	chr16	4678650	4679650	+	825.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 1 of 27)	CpG	570.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	286.03	343.74	286.74	272.59	292.5	253.19	341.15	504.07	173.62
Merged-chr12-111037799-5	chr12	111037257	111038257	+	825.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2041.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	81.8	88.47	76.77	62.75	53.65	50.64	107.73	139.28	67.45
Merged-chr17-80083428-3	chr17	80082935	80083935	+	825.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21167.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	25.74	17.51	15.72	47.23	34.99	46.62	39.08	33.6	36.85
Merged-chr19-4306402-3	chr19	4305899	4306899	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130863)	promoter-TSS (NM_130863)	-177.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	24.6	15.21	24.05	21.59	19.13	26.53	27.46	12.38	14.36
Merged-chr13-75844454-3	chr13	75843960	75844960	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	4574.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	26.89	39.63	30.52	18.89	20.53	28.94	27.46	12.38	9.37
Merged-chr12-105009918-3	chr12	105009419	105010419	+	825.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-110.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	4.58	5.99	5.55	10.12	4.2	11.25	6.34	0.44	2.5
Merged-chr7-142392007-2	chr7	142391527	142392527	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5a|LINE|L1	-4157.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	112.12	117.04	121.17	67.47	64.84	82.79	104.56	138.4	60.58
Merged-chr18-78138435-2	chr18	78137950	78138950	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171011, intron 1 of 8)	intron (NM_001171011, intron 1 of 8)	3669.0	NM_001171011	108052.0	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	4.0	3.69	1.85	3.37	4.2	2.41	5.28	2.21	1.25
Merged-chr14-25587809-2	chr14	25587310	25588310	+	825.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	1006.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	10.87	11.98	4.62	8.1	7.0	19.29	17.96	7.96	9.99
Merged-chr18-32285340-3	chr18	32284847	32285847	+	825.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45016.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	5.15	0.92	1.85	2.02	0.47	0.0	4.22	1.77	6.25
Merged-chr3-136795000-3	chr3	136794485	136795485	+	825.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	124919.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	12.59	19.35	11.1	18.22	14.46	4.82	9.51	6.19	14.99
Merged-chr17-26571050-3	chr17	26570509	26571509	+	825.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	9497.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	68.65	44.24	22.2	109.3	94.7	56.27	73.93	39.8	23.73
Merged-chr1-9546369-4	chr1	9545788	9546788	+	825.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021511, exon 1 of 1)	exon (NM_021511, exon 1 of 1)	880.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	127.0	157.13	154.47	128.87	135.75	137.45	143.64	126.9	128.03
Merged-chr8-66394383-2	chr8	66393871	66394871	+	825.116699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	intron (NM_175188, intron 5 of 7)	8070.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	16.02	17.05	16.65	16.19	21.93	20.9	29.57	25.65	21.86
Merged-chr15-59649789-3	chr15	59649328	59650328	+	825.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	1174.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	208.8	305.96	258.99	257.07	306.03	254.8	248.2	279.89	166.12
Merged-chr3-37584735-2	chr3	37584231	37585231	+	825.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25160.0	NR_130162	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	8.58	5.07	3.7	2.7	3.27	5.63	3.17	3.54	1.25
Merged-chr10-82797042-2	chr10	82796557	82797557	+	825.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15066.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	9.72	2.76	12.95	5.4	8.4	10.45	5.28	5.75	4.37
Merged-chr15-100403479-3	chr15	100402999	100403999	+	825.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 9 of 16)	intron (NM_008732, intron 9 of 16)	19556.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	24.6	15.67	9.25	64.1	59.25	16.88	25.35	17.24	6.87
Merged-chr9-55541117-3	chr9	55540614	55541614	+	825.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027397)	promoter-TSS (NM_027397)	-35.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	1.72	4.15	3.7	6.07	2.8	6.43	6.34	7.07	1.25
Merged-chr15-85012763-1	chr15	85012263	85013263	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	8.01	6.45	6.47	14.84	9.8	8.84	5.28	2.21	2.5
Merged-chr9-36768248-1	chr9	36767748	36768748	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008408)	promoter-TSS (NM_008408)	-670.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	323.21	566.3	299.68	314.42	485.17	286.15	430.92	557.57	212.96
Merged-chr5-90589132-1	chr5	90588632	90589632	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	27923.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	5.15	2.3	1.85	12.82	4.2	0.0	2.11	2.65	4.37
Merged-chr8-117061671-2	chr8	117061184	117062184	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029686, intron 9 of 42)	intron (NM_029686, intron 9 of 42)	20765.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	6.29	4.15	0.0	3.37	1.87	0.0	3.17	3.1	1.25
Merged-chr4-47258766-1	chr4	47258266	47259266	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009928, exon 8 of 40)	exon (NM_009928, exon 8 of 40)	50754.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.58	5.53	1.85	10.8	3.73	4.82	5.28	4.86	2.5
Merged-chr3-88492633-1	chr3	88492133	88493133	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	679.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	83.52	48.38	23.12	90.41	44.78	47.42	36.97	29.63	15.61
Merged-chr8-57427752-1	chr8	57427252	57428252	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-28171.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	7.44	7.37	3.7	10.12	8.4	6.43	1.06	0.44	0.0
Merged-chr10-13686296-3	chr10	13685792	13686792	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-133150.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	20.02	29.03	15.72	39.13	38.25	45.01	11.62	11.05	7.49
Merged-chr8-115583435-1	chr8	115582935	115583935	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123459.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	36.04	37.78	38.85	38.46	39.19	59.48	26.4	15.48	21.86
Merged-chr17-11637893-2	chr17	11637391	11638391	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 7 of 11)	intron (NM_016694, intron 7 of 11)	245298.0	NR_045808	52027.0	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	20.02	20.74	11.1	4.72	5.6	6.43	3.17	2.65	1.25
Merged-chr5-130842543-2	chr5	130842021	130843021	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	393729.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	6.86	5.53	5.55	5.4	6.06	4.82	1.06	5.31	7.49
Merged-chr7-72109185-2	chr7	72108687	72109687	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 19 of 22)	intron (NM_001024703, intron 19 of 22)	-147169.0	NR_126483	102640608.0	Mm.399138	NR_126483	ENSMUSG00000108480	Gm36633	-	predicted gene, 36633	ncRNA	3.43	4.15	5.55	2.7	7.46	4.82	2.11	0.0	2.5
Merged-chr2-38602151-2	chr2	38601656	38602656	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	41750.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	21.74	24.88	36.07	16.87	21.93	18.49	22.18	29.18	14.36
Merged-chr12-91665675-1	chr12	91665175	91666175	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-75188.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	10.3	15.21	4.62	10.12	11.2	12.86	6.34	11.05	10.62
Merged-chr9-50479349-2	chr9	50478841	50479841	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15184.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	17.16	10.6	7.4	22.27	7.46	8.84	10.56	10.61	8.12
Merged-chr5-139408157-1	chr5	139407657	139408657	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	1770.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	154.45	145.61	184.07	142.37	157.21	179.24	162.65	185.71	121.78
Merged-chr6-117428037-1	chr6	117427537	117428537	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67198.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	5.15	1.38	1.85	0.67	0.47	1.61	3.17	2.21	1.25
Merged-chr15-61935704-1	chr15	61935204	61936204	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-49637.0	NM_001177354	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	2.29	2.76	0.0	3.37	1.4	1.61	1.06	3.98	3.12
Merged-chr12-119359571-1	chr12	119359071	119360071	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83839.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	8.01	9.22	20.35	11.47	10.26	12.86	3.17	10.61	15.61
Merged-chr4-155234392-3	chr4	155233785	155234785	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11750.0	NM_001357191	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	62.35	52.53	54.57	69.5	44.78	61.09	36.97	31.39	32.48
Merged-chr14-21273719-3	chr14	21273224	21274224	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	MIRc|SINE|MIR	197572.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	8.58	6.45	5.55	12.14	8.4	4.82	9.51	4.86	3.75
Merged-chr18-53166657-1	chr18	53166157	53167157	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9635.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	9.15	3.23	9.25	5.4	1.87	7.23	12.67	2.21	5.0
Merged-chr18-84784050-2	chr18	84783549	84784549	+	825.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39982.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	13.73	13.82	6.47	14.17	7.0	15.27	2.11	8.4	10.62
Merged-chr8-71597020-3	chr8	71596505	71597505	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166213)	promoter-TSS (NM_001166213)	-641.0	NM_001166213	100037278.0	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	5.72	5.07	8.32	7.42	0.93	4.02	4.22	1.33	5.62
Merged-chr3-51170432-3	chr3	51169930	51170930	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54017.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.72	2.76	0.0	2.7	1.87	4.82	2.11	2.21	3.75
Merged-chr19-46987861-1	chr19	46987361	46988361	+	825.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	intron (NM_001164363, intron 1 of 17)	-18294.0	NM_001164365	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.0	0.46	0.0	2.7	2.8	0.8	19.01	7.96	3.75
Merged-chr16-14365670-3	chr16	14365182	14366182	+	825.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	4124.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	17.73	10.14	29.6	13.49	5.6	20.9	12.67	15.48	16.24
Merged-chr12-40681310-3	chr12	40680821	40681821	+	824.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 12 of 52)	intron (NM_172803, intron 12 of 52)	235268.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	9.15	9.68	7.4	17.54	9.33	23.31	20.07	11.94	9.37
Merged-chr5-105651303-3	chr5	105650816	105651816	+	824.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48653.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	58.35	59.44	27.75	86.36	66.24	67.52	17.96	18.57	5.0
Merged-chr11-49085044-3	chr11	49084537	49085537	+	824.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-1980.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	50.34	63.13	51.8	31.71	46.18	43.4	45.42	61.02	36.22
Merged-chr11-105990458-3	chr11	105989951	105990951	+	824.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_207624)	TTS (NM_207624)	-4224.0	NM_001101453	217246.0	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	13.16	7.37	3.7	23.62	16.79	21.7	27.46	20.34	9.99
Merged-chr5-134374736-2	chr5	134374234	134375234	+	824.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	48280.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	18.88	5.53	14.8	9.45	9.33	20.09	12.67	9.29	10.62
Merged-chr7-127252590-3	chr7	127252084	127253084	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360916, intron 2 of 2)	B2_Mm2|SINE|B2	7483.0	NM_001360916	244216.0	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	6.86	11.06	6.47	6.07	7.0	14.47	13.73	8.84	9.99
Merged-chr16-22015780-3	chr16	22015279	22016279	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027488, intron 3 of 16)	intron (NR_027488, intron 3 of 16)	6295.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	19.45	17.05	24.97	18.22	16.79	32.15	16.9	9.29	18.74
Merged-chr19-12009886-6	chr19	12009337	12010337	+	824.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26903.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	49.77	48.38	50.87	38.46	34.06	42.6	47.53	44.66	34.97
Merged-chr9-110281315-3	chr9	110280813	110281813	+	824.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105744)	promoter-TSS (NR_105744)	26.0	NR_105744	102465959.0		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	4.58	5.07	1.85	10.12	4.2	0.0	5.28	7.52	6.25
Merged-chr2-174085203-3	chr2	174084700	174085700	+	824.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	8149.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	13.73	24.42	11.1	14.17	16.33	11.25	21.12	8.84	9.37
Merged-chr9-83400901-1	chr9	83400401	83401401	+	824.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029434, intron 4 of 7)	GA-rich|Low_complexity|Low_complexity	-30646.0	NR_102437	100039186.0	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	8.01	2.3	15.72	3.37	0.93	4.82	4.22	3.98	5.0
Merged-chr10-21918874-3	chr10	21918381	21919381	+	824.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	36697.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.86	5.99	6.47	8.1	9.33	9.65	3.17	5.75	8.74
Merged-chr19-34262511-3	chr19	34262011	34263011	+	824.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7138.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	6.29	3.23	5.55	4.05	4.2	4.82	4.22	7.52	3.75
Merged-chr11-49100601-3	chr11	49100117	49101117	+	824.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	13140.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	22.31	24.42	29.6	14.84	13.06	33.76	34.85	18.57	23.11
Merged-chr9-32676284-1	chr9	32675784	32676784	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19758.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	106.4	112.89	47.17	116.73	98.9	81.99	105.62	121.15	45.59
Merged-chr6-122810358-2	chr6	122809878	122810878	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9806.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	132.72	152.52	113.77	128.2	135.29	98.06	134.14	161.39	67.45
Merged-chr12-75720183-1	chr12	75719683	75720683	+	824.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030750, intron 2 of 2)	B1_Mur1|SINE|Alu	15546.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	41.19	43.31	40.7	77.59	83.51	53.85	41.19	34.05	16.86
Merged-chr14-102942562-3	chr14	102942029	102943029	+	824.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40103.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	18.31	13.36	8.32	13.49	9.8	7.23	22.18	15.03	21.23
Merged-chr1-172586596-3	chr1	172586094	172587094	+	824.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029084, intron 2 of 4)	intron (NM_029084, intron 2 of 4)	3974.0	NM_029084	74748.0	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	7.44	3.69	5.55	6.07	3.27	4.82	34.85	16.36	14.36
Merged-chr1-191611853-1	chr1	191611353	191612353	+	824.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178632, intron 12 of 19)	intron (NM_178632, intron 12 of 19)	36217.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	16.59	21.2	33.3	17.54	7.0	8.04	2.11	0.0	1.25
Merged-chr15-5221949-1	chr15	5221449	5222449	+	824.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	22238.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	6.86	6.91	7.4	12.14	11.2	1.61	10.56	7.96	11.24
Merged-chr4-3680358-2	chr4	3679898	3680898	+	824.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	2277.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	146.45	158.97	150.77	117.4	78.84	123.78	180.61	220.64	159.88
Merged-chr6-134671052-2	chr6	134670567	134671567	+	824.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	intron (NM_001170479, intron 2 of 3)	30127.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.58	4.61	3.7	2.02	2.33	14.47	9.51	1.77	3.75
Merged-chr7-5058250-4	chr7	5057742	5058742	+	824.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146178, intron 3 of 4)	intron (NM_146178, intron 3 of 4)	1516.0	NM_146178	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	6.86	10.14	8.32	6.75	10.26	16.88	16.9	4.86	13.12
Merged-chr15-75905642-3	chr15	75905117	75906117	+	824.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029663, intron 2 of 9)	intron (NM_029663, intron 2 of 9)	3727.0	NM_001285433	66656.0	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	31.46	14.75	11.1	20.92	11.2	14.47	30.63	24.76	16.24
Merged-chr13-49306992-4	chr13	49306572	49307572	+	824.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	2136.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	89.81	89.85	95.27	101.88	93.77	73.95	92.94	113.64	80.56
Merged-chr10-57835309-2	chr10	57834814	57835814	+	824.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40770.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	40.04	41.93	22.2	58.03	41.05	51.44	35.91	44.66	33.1
Merged-chr3-100917013-2	chr3	100916543	100917543	+	824.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5450.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.43	3.69	5.55	1.35	3.27	0.0	2.11	1.33	1.25
Merged-chr13-105311292-3	chr13	105310789	105311789	+	824.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16804.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	41.76	46.54	56.42	43.18	34.52	41.8	32.74	35.82	51.21
Merged-chr7-16044036-3	chr7	16043545	16044545	+	824.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27800.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	153.88	170.03	141.52	132.24	116.16	122.98	149.98	174.66	99.3
Merged-chr3-144580129-2	chr3	144579615	144580615	+	824.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	9688.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	61.21	64.05	50.87	50.6	48.52	51.44	78.16	72.96	29.98
Merged-chr7-27273963-3	chr7	27273472	27274472	+	824.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010950, exon 7 of 10)	exon (NM_010950, exon 7 of 10)	15211.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	3.43	3.69	6.47	2.02	3.27	1.61	3.17	7.52	9.99
Merged-chr19-34390166-3	chr19	34389670	34390670	+	824.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	84965.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	10.87	2.76	5.55	9.45	7.0	1.61	2.11	4.86	5.0
Merged-chr13-12464351-3	chr13	12463854	12464854	+	824.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2616.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	16.59	5.53	8.32	12.14	8.86	3.22	14.79	18.13	5.0
Merged-chr3-19199309-3	chr3	19198810	19199810	+	824.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356295, intron 1 of 7)	intron (NM_001356295, intron 1 of 7)	11015.0	NM_001356295	67472.0	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	16.02	14.75	25.9	41.83	48.05	45.01	82.38	79.15	34.35
Merged-chr7-141308802-3	chr7	141308309	141309309	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016874, intron 10 of 11)	intron (NM_016874, intron 10 of 11)	16803.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	22.31	25.8	13.87	39.81	39.65	33.76	60.2	36.7	24.98
Merged-chr16-36779767-1	chr16	36779267	36780267	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	5195.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	12.59	13.82	9.25	24.96	15.86	12.86	8.45	11.94	11.87
Merged-chr13-37964735-3	chr13	37964204	37965204	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29504.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	110.98	81.1	73.07	114.7	54.11	87.61	71.82	51.73	36.22
Merged-chr6-83032923-3	chr6	83032433	83033433	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291799, exon 2 of 5)	exon (NM_001291799, exon 2 of 5)	538.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	192.78	144.23	147.07	186.9	186.6	149.5	195.39	185.71	99.92
Merged-chr5-73637888-2	chr5	73637404	73638404	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011890, intron 5 of 5)	intron (NM_011890, intron 5 of 5)	-5483.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	5.15	7.37	12.02	11.47	7.46	8.04	13.73	9.73	13.12
Merged-chr19-41847253-2	chr19	41846739	41847739	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	893.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	14.3	1.84	14.8	8.77	6.53	5.63	17.96	6.63	9.99
Merged-chr4-155220914-1	chr4	155220414	155221414	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	1621.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	33.18	44.24	26.82	45.88	45.25	45.01	46.47	35.37	16.86
Merged-chr2-91002274-2	chr2	91001787	91002787	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198683, intron 4 of 13)	intron (NM_198683, intron 4 of 13)	-33340.0	NM_009023	19400.0	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	28.03	29.95	37.92	26.99	18.66	34.56	30.63	23.43	22.48
Merged-chr1-64738891-1	chr1	64738391	64739391	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	6.29	7.83	3.7	8.1	8.86	8.04	9.51	2.65	8.74
Merged-chr19-10849163-2	chr19	10848676	10849676	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023044, intron 2 of 7)	B4|SINE|B4	6632.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	12.01	5.07	9.25	7.42	0.47	12.86	7.39	6.63	14.36
Merged-chr17-86802939-1	chr17	86802439	86803439	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 2 of 15)	intron (NM_010137, intron 2 of 15)	49075.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.15	2.76	5.55	2.7	1.87	3.22	7.39	0.88	2.5
Merged-chr3-37360791-2	chr3	37360292	37361292	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008006, intron 1 of 2)	intron (NM_008006, intron 1 of 2)	12139.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	6.86	2.76	0.0	3.37	4.2	14.47	13.73	8.4	14.99
Merged-chr16-45029675-1	chr16	45029175	45030175	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64336.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	4.0	6.45	4.62	4.72	6.06	6.43	9.51	2.65	4.37
Merged-chr16-4381703-3	chr16	4381229	4382229	+	824.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	38769.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	66.93	73.26	69.37	51.95	66.71	74.75	76.05	81.36	37.47
Merged-chr5-43206853-1	chr5	43206353	43207353	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-26610.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.0	3.69	4.62	8.77	7.93	6.43	5.28	3.1	5.0
Merged-chr7-136381048-2	chr7	136380548	136381548	+	824.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31633.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	4.0	6.91	3.7	7.42	7.93	8.04	30.63	20.78	11.87
Merged-chr6-125595017-3	chr6	125594522	125595522	+	824.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 10 of 51)	MTD|LTR|ERVL-MaLR	42074.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	14.3	10.6	0.0	12.14	7.0	12.86	6.34	8.84	6.87
Merged-chr10-128495565-3	chr10	128495059	128496059	+	824.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172259, intron 4 of 6)	PB1D11|SINE|Alu	-1673.0	NM_010860	17904.0	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	18.88	19.35	23.12	14.84	10.26	11.25	19.01	17.69	12.49
Merged-chr9-105053965-3	chr9	105053454	105054454	+	824.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053159, intron 1 of 9)	intron (NM_053159, intron 1 of 9)	686.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	154.45	196.75	175.74	159.91	143.22	184.07	201.73	213.12	78.69
Merged-chr11-120748272-3	chr11	120747780	120748780	+	824.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-16259.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	28.03	21.66	30.52	12.82	14.0	29.74	26.4	23.43	21.23
Merged-chr18-42510172-2	chr18	42509669	42510669	+	824.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-1318.0	NM_001039474	56070.0	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	10.3	12.9	7.4	8.77	6.06	17.68	5.28	10.61	4.37
Merged-chr13-59842326-2	chr13	59841840	59842840	+	824.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-19193.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	14.3	10.6	5.55	14.84	7.46	6.43	13.73	14.15	8.12
Merged-chr11-110542125-2	chr11	110541628	110542628	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62788.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	17.16	9.68	5.55	28.34	5.6	14.47	17.96	3.1	11.87
Merged-chr15-77831498-2	chr15	77830997	77831997	+	824.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	10678.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	13.16	20.27	12.95	12.14	16.33	16.08	12.67	13.71	14.36
Merged-chr8-123283150-2	chr8	123282657	123283657	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016925, intron 28 of 42)	B1F1|SINE|Alu	-28935.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	6.86	4.15	9.25	10.12	3.27	13.66	7.39	3.54	9.99
Merged-chr3-41468001-2	chr3	41467505	41468505	+	824.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	25194.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.86	1.84	5.55	3.37	6.06	11.25	5.28	0.88	2.5
Merged-chr14-12993841-1	chr14	12993341	12994341	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-170762.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	1.72	1.38	1.85	8.1	3.27	3.22	7.39	1.77	2.5
Merged-chr13-37120436-1	chr13	37119936	37120936	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70192.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	13.73	14.28	14.8	15.52	23.79	20.9	3.17	8.84	8.74
Merged-chr6-97450977-3	chr6	97450482	97451482	+	824.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	L1_Mus1|LINE|L1	8304.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	105.83	123.03	80.47	122.8	100.77	118.16	110.9	135.3	99.92
Merged-chr9-105521346-1	chr9	105520846	105521846	+	824.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253831)	promoter-TSS (NM_001253831)	-89.0	NM_001253831	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	6.86	4.61	1.85	3.37	0.93	2.41	34.85	11.94	8.12
Merged-chr2-124668679-3	chr2	124668144	124669144	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172537)	TTS (NM_172537)	15063.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	24.6	16.13	18.5	10.12	11.2	30.54	15.84	15.03	15.61
Merged-chr12-3835105-1	chr12	3834605	3835605	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001271753, exon 2 of 23)	5' UTR (NM_001271753, exon 2 of 23)	27139.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	79.52	55.29	17.57	76.24	41.99	37.78	66.54	67.65	22.48
Merged-chr15-103552726-3	chr15	103552228	103553228	+	824.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12353.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	4.58	4.61	5.55	14.17	2.33	1.61	4.22	2.21	0.0
Merged-chr16-87676452-1	chr16	87675952	87676952	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-22502.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	7.44	3.69	5.55	6.07	9.33	9.65	4.22	3.54	5.0
Merged-chrX-60385554-1	chrX	60385054	60386054	+	824.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	MTEb|LTR|ERVL-MaLR	8938.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	15.45	15.21	22.2	12.14	14.93	19.29	19.01	19.01	13.12
Merged-chr11-103364398-3	chr11	103363897	103364897	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183288)	promoter-TSS (NM_183288)	-705.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	103.54	74.65	79.55	73.54	45.25	61.09	51.75	45.1	44.97
Merged-chr2-128855624-3	chr2	128855130	128856130	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8302.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	21.17	10.6	7.4	29.69	9.33	8.84	12.67	13.27	13.74
Merged-chr1-40294575-3	chr1	40294092	40295092	+	824.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 4 of 10)	intron (NM_001123382, intron 4 of 10)	28006.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	104.69	105.52	72.15	111.33	105.43	62.7	81.33	82.24	48.09
Merged-chr1-191180036-2	chr1	191179509	191180509	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	3324.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	61.78	76.95	46.25	62.75	58.31	40.19	74.99	80.03	46.22
Merged-chr12-38814161-2	chr12	38813676	38814676	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	30465.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.01	11.98	7.4	19.57	9.33	6.43	14.79	2.65	9.99
Merged-chr7-140127154-2	chr7	140126660	140127660	+	824.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153783, intron 2 of 6)	intron (NM_153783, intron 2 of 6)	1475.0	NM_153783	212503.0	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	51.48	54.37	46.25	38.46	48.52	57.07	72.88	61.9	32.48
Merged-chr6-136471090-1	chr6	136470590	136471590	+	824.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47761.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.86	6.91	11.1	11.47	5.6	14.47	12.67	5.31	5.62
Merged-chr6-29485313-3	chr6	29484799	29485799	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029985, intron 32 of 37)	intron (NM_001029985, intron 32 of 37)	13862.0	NM_001145360	668210.0	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	69.79	71.42	41.62	62.75	76.51	72.34	88.72	84.01	21.23
Merged-chr5-80855203-3	chr5	80854710	80855710	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-165361.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.86	5.53	16.65	3.37	2.33	4.82	9.51	3.1	3.75
Merged-chr14-47299046-3	chr14	47298540	47299540	+	824.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178684, intron 1 of 3)	intron (NM_178684, intron 1 of 3)	766.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	167.04	159.89	81.4	153.84	149.28	105.3	175.33	145.92	84.31
Merged-chr19-42714003-2	chr19	42713507	42714507	+	824.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38768.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	3.43	3.23	7.4	2.02	9.33	8.04	12.67	12.82	8.74
Merged-chr9-100570745-2	chr9	100570244	100571244	+	824.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101483, intron 1 of 1)	intron (NM_001101483, intron 1 of 1)	341.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	24.6	9.22	7.4	43.86	29.39	9.65	23.24	10.61	6.87
Merged-chr16-84955664-3	chr16	84955161	84956161	+	824.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 15 of 15)	intron (NM_001198825, intron 15 of 15)	-16550.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.58	3.23	11.1	4.05	7.0	3.22	3.17	0.88	5.0
Merged-chr4-44016338-3	chr4	44015835	44016835	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080384, intron 2 of 5)	intron (NM_001080384, intron 2 of 5)	3685.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	32.61	27.65	23.12	46.56	40.12	26.53	23.24	19.46	17.49
Merged-chr14-21986187-3	chr14	21985701	21986701	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	3400.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.29	2.3	3.7	3.37	1.4	0.0	4.22	0.88	5.0
Merged-chr19-8991507-1	chr19	8991007	8992007	+	824.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	intron (NM_001039959, intron 1 of 5)	2223.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	9.15	2.76	5.55	6.07	0.47	8.04	4.22	0.0	1.25
Merged-chr12-12269332-3	chr12	12268821	12269821	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7182.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	93.24	140.54	73.07	82.99	80.24	70.73	101.39	88.88	55.58
Merged-chr19-10295329-3	chr19	10294830	10295830	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	9547.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	114.98	118.42	133.19	141.02	123.16	154.33	105.62	153.43	76.19
Merged-chr1-84241595-3	chr1	84241086	84242086	+	824.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-22625.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	77.8	86.17	49.02	60.72	50.38	52.25	73.93	75.61	41.84
Merged-chr17-71144457-2	chr17	71143980	71144980	+	824.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39052.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	18.88	13.36	34.22	32.39	26.12	26.53	15.84	13.71	26.23
Merged-chr5-115480269-2	chr5	115479761	115480761	+	824.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167691, exon 3 of 5)	exon (NM_001167691, exon 3 of 5)	4036.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	12.01	11.06	22.2	66.8	44.32	36.97	27.46	26.97	16.24
Merged-chr4-47057416-3	chr4	47056899	47057899	+	824.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356426)	promoter-TSS (NM_001356426)	-93.0	NM_001356426	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	5.72	3.69	1.85	12.82	8.4	8.04	6.34	4.42	2.5
Merged-chr14-70168117-3	chr14	70167634	70168634	+	824.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145978, intron 6 of 9)	intron (NM_145978, intron 6 of 9)	-8632.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	2.29	1.84	3.7	4.72	2.33	1.61	11.62	3.54	1.25
Merged-chr13-23519657-2	chr13	23519160	23520160	+	824.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAA|tRNA|tRNA	-11384.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	18.31	39.17	12.95	16.19	14.93	11.25	26.4	18.13	18.74
Merged-chr2-35135691-3	chr2	35135180	35136180	+	824.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_012018, exon 13 of 44)	exon (NM_012018, exon 13 of 44)	3446.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	25.17	20.27	22.2	12.82	11.2	29.74	12.67	12.38	9.99
Merged-chr4-135982190-3	chr4	135981674	135982674	+	824.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	5070.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	126.42	135.47	94.35	129.55	102.63	95.65	129.91	144.59	93.68
Merged-chr11-49712080-3	chr11	49711604	49712604	+	824.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212484, intron 1 of 11)	CpG	618.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	88.67	70.04	91.57	89.74	56.91	57.07	115.12	38.47	53.71
Merged-chr8-87472669-1	chr8	87472169	87473169	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019626)	promoter-TSS (NM_019626)	-77.0	NM_019626	12404.0	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	4.58	0.46	0.0	3.37	1.87	0.0	2.11	0.44	1.25
Merged-chr6-38500251-1	chr6	38499751	38500751	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177185, intron 16 of 16)	intron (NM_177185, intron 16 of 16)	-7074.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	21.17	20.27	28.67	23.62	22.86	23.31	22.18	17.24	18.11
Merged-chr16-11006903-2	chr16	11006383	11007383	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2015.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	223.1	223.02	177.59	244.25	227.19	285.34	175.33	221.53	139.89
Merged-chr3-79843528-1	chr3	79843028	79844028	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	-866.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	57.21	59.9	49.02	49.25	54.58	72.34	81.33	66.77	67.45
Merged-chr8-39060182-1	chr8	39059682	39060682	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357304, intron 2 of 7)	ORR1D1|LTR|ERVL-MaLR	54337.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	4.58	2.76	4.62	6.07	5.6	3.22	1.06	2.21	7.49
Merged-chr13-81655418-1	chr13	81654918	81655918	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2388.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	9.15	9.22	14.8	5.4	3.73	7.23	4.22	2.21	6.87
Merged-chr14-20892172-1	chr14	20891672	20892672	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37226.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	6.29	5.99	2.77	2.02	2.8	0.0	1.06	5.75	3.75
Merged-chr12-29289044-1	chr12	29288544	29289544	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	147115.0	NR_154987	102633526.0	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	2.29	6.91	5.55	8.77	8.4	18.49	9.51	7.96	7.49
Merged-chr3-41452209-1	chr3	41451709	41452709	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR37B|LTR|ERV1	40990.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.29	1.84	3.7	3.37	3.27	1.61	5.28	2.21	3.75
Merged-chr7-67426315-1	chr7	67425815	67426815	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53457.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	37.76	23.96	32.37	41.83	26.12	57.87	39.08	16.36	22.48
Merged-chr1-180945882-1	chr1	180945382	180946382	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144794, intron 1 of 22)	intron (NM_144794, intron 1 of 22)	3364.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	34.32	43.77	40.7	34.41	25.19	45.01	42.25	34.05	31.85
Merged-chr2-14190784-1	chr2	14190284	14191284	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	16260.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	24.03	18.43	11.1	7.42	6.53	4.82	5.28	8.4	7.49
Merged-chrX-48680818-1	chrX	48680318	48681318	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6340.0	NM_181751	236781.0	Mm.269129	NM_181751	ENSMUSG00000051209	Gpr119	-	G-protein coupled receptor 119	protein-coding	16.02	11.52	16.65	21.59	16.33	19.29	17.96	9.29	13.12
Merged-chr11-78245301-2	chr11	78244789	78245789	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009143)	promoter-TSS (NM_009143)	414.0	NM_009297	20926.0	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	365.54	332.69	213.66	339.38	266.38	198.54	336.92	367.0	158.63
Merged-chr16-89864874-3	chr16	89864357	89865357	+	824.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 8 of 27)	intron (NM_009384, intron 8 of 27)	-46505.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	7.44	1.84	1.85	6.07	4.67	9.65	7.39	4.42	3.75
Merged-chr1-191881383-1	chr1	191880883	191881883	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25398.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	6.29	8.29	7.4	11.47	6.06	11.25	8.45	1.33	1.25
Merged-chr14-102516901-1	chr14	102516401	102517401	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	465731.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	6.86	6.45	0.0	4.05	5.6	0.0	6.34	3.54	5.62
Merged-chr10-89407030-1	chr10	89406530	89407530	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36937.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	4.0	2.3	7.4	5.4	1.4	6.43	3.17	3.1	6.87
Merged-chr9-100606236-1	chr9	100605736	100606736	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35151.0	NM_001101483	245020.0	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	5.72	2.3	3.7	6.75	3.73	3.22	5.28	0.88	2.5
Merged-chr1-89302706-1	chr1	89302206	89303206	+	824.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103427.0	NR_040482	77331.0	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	1.14	0.0	0.0	4.72	3.73	1.61	0.0	0.88	3.75
Merged-chr16-55795702-4	chr16	55795264	55796264	+	823.9851070000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26374.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	49.2	67.74	60.12	82.32	53.18	73.14	61.26	54.39	54.96
Merged-chr10-8683147-3	chr10	8682638	8683638	+	823.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-164313.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	4.58	0.92	7.4	6.07	3.73	0.8	2.11	1.77	1.25
Merged-chr6-116136339-3	chr6	116135821	116136821	+	823.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57053.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	90.38	103.68	80.47	92.44	80.24	61.89	107.73	96.39	56.83
Merged-chr10-81257402-3	chr10	81256853	81257853	+	823.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285854)	promoter-TSS (NM_001285854)	54.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	9.15	10.14	7.4	12.82	7.93	10.45	4.22	7.52	5.62
Merged-chr17-26462777-2	chr17	26462285	26463285	+	823.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45687.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	8.01	2.3	0.92	11.47	8.86	29.74	9.51	13.71	15.61
Merged-chr11-106796853-2	chr11	106796356	106797356	+	823.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166685, intron 4 of 18)	ID_B1|SINE|B4	7604.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	5.72	6.91	16.65	56.68	42.45	37.78	23.24	25.65	18.11
Merged-chr7-47023721-3	chr7	47023211	47024211	+	823.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15297.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	20.59	12.44	7.4	8.77	10.26	3.22	13.73	8.4	1.25
Merged-chr4-136889232-2	chr4	136888759	136889759	+	823.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007574)	TTS (NM_007574)	-3082.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	50.34	66.81	119.32	52.63	67.18	110.12	159.48	143.26	106.79
Merged-chr10-94689297-2	chr10	94688774	94689774	+	823.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015524)	promoter-TSS (NR_015524)	484.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	78.94	99.07	58.27	140.34	146.48	79.58	126.74	95.51	76.19
Merged-chr18-6411180-2	chr18	6410687	6411687	+	823.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79459.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	6.29	1.84	0.0	3.37	1.4	3.22	1.06	0.44	2.5
Merged-chr3-142272662-3	chr3	142272130	142273130	+	823.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	intron (NM_001190854, intron 8 of 12)	-103205.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	9.72	16.13	17.57	13.49	12.13	8.84	43.3	51.73	41.22
Merged-chr11-52397594-3	chr11	52397094	52398094	+	823.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153117, intron 1 of 2)	intron (NM_153117, intron 1 of 2)	1166.0	NM_153117	213673.0	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	108.69	106.44	99.89	84.34	71.84	75.56	101.39	95.51	49.34
Merged-chr3-152800203-2	chr3	152799693	152800693	+	823.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86093.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	1.72	3.23	1.85	5.4	0.0	6.43	6.34	2.21	5.0
Merged-chr17-34912284-2	chr17	34911797	34912797	+	823.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286575, intron 25 of 27)	intron (NM_001286575, intron 25 of 27)	-2169.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	7.44	2.3	1.85	8.1	1.87	1.61	5.28	1.77	2.5
Merged-chr4-124847790-3	chr4	124847309	124848309	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008636, exon 11 of 11)	3' UTR (NM_008636, exon 11 of 11)	2755.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	6.29	5.53	3.7	5.4	3.27	3.22	4.22	2.21	2.5
Merged-chr7-129501576-3	chr7	129501077	129502077	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-90286.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.29	8.29	3.7	4.05	7.46	8.84	7.39	5.75	6.25
Merged-chr9-83831322-3	chr9	83830820	83831820	+	823.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3369.0	NM_009445	22137.0	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	44.05	45.62	34.22	43.18	32.66	27.33	48.58	42.45	17.49
Merged-chr18-32353314-3	chr18	32352862	32353862	+	823.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-23855.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	29.75	25.8	11.1	29.01	16.33	9.65	34.85	55.71	24.98
Merged-chr4-126250655-2	chr4	126250151	126251151	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	5668.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	25.17	20.74	26.82	22.94	11.66	24.11	23.24	17.24	24.36
Merged-chr5-117164738-2	chr5	117164219	117165219	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	MTE2a|LTR|ERVL-MaLR	31131.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	8.01	8.29	11.1	14.17	11.2	14.47	4.22	0.88	1.25
Merged-chr12-40543745-3	chr12	40543264	40544264	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	97711.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	38.33	36.86	32.37	26.31	27.99	31.35	29.57	26.53	33.72
Merged-chr8-121832808-1	chr8	121832308	121833308	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3239.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	10.3	9.68	14.8	5.4	9.33	11.25	41.19	19.46	8.74
Merged-chr1-179488178-2	chr1	179487681	179488681	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 1 of 11)	intron (NM_027188, intron 1 of 11)	29860.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	5.15	3.69	2.77	8.77	10.73	4.02	8.45	8.84	7.49
Merged-chr3-136668970-1	chr3	136668470	136669470	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_008913	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	98.97	117.96	77.7	109.98	129.22	95.65	105.62	108.33	62.45
Merged-chr8-69189654-2	chr8	69189184	69190184	+	823.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19362.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	42.9	45.16	9.25	107.95	107.76	95.65	101.39	91.97	48.09
Merged-chr8-117227487-2	chr8	117226989	117227989	+	823.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29530.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	2.86	4.15	5.55	6.07	4.2	4.82	2.11	1.77	2.5
Merged-chr1-135680896-3	chr1	135680396	135681396	+	823.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39167.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	9.72	9.22	12.95	10.12	10.26	19.29	6.34	3.54	7.49
Merged-chr16-77174906-3	chr16	77174421	77175421	+	823.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154407.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	3.43	7.83	0.0	3.37	7.0	5.63	3.17	4.86	5.0
Merged-chr15-36606728-3	chr15	36606194	36607194	+	823.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008774, intron 1 of 14)	intron (NM_008774, intron 1 of 14)	2279.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	33.75	34.1	23.12	15.52	14.93	24.92	36.97	39.8	21.23
Merged-chr6-87205621-1	chr6	87205121	87206121	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054041, intron 13 of 17)	intron (NM_054041, intron 13 of 17)	100875.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	5.15	1.84	1.85	7.42	4.67	11.25	4.22	5.75	2.5
Merged-chr2-173275826-1	chr2	173275326	173276326	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	707.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	4.0	0.92	1.85	6.75	6.06	11.25	3.17	0.44	1.25
Merged-chr4-144930525-1	chr4	144930025	144931025	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37388.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.29	9.68	9.25	12.14	13.06	16.88	5.28	1.33	4.37
Merged-chr1-78484605-1	chr1	78484105	78485105	+	823.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2|LTR|ERVL-MaLR	4292.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	9.15	7.37	13.87	8.1	8.86	6.43	6.34	3.98	7.49
Merged-chr15-79658064-2	chr15	79657555	79658555	+	823.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029407, intron 1 of 17)	intron (NM_029407, intron 1 of 17)	901.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	19.45	27.65	6.47	24.29	17.26	20.9	7.39	11.05	11.87
Merged-chr1-64338105-2	chr1	64337618	64338618	+	823.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-194686.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	53.77	52.07	16.65	33.06	56.45	41.8	19.01	24.76	3.75
Merged-chr1-180874267-3	chr1	180873775	180874775	+	823.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18833.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	5.15	5.07	10.17	5.4	0.93	1.61	5.28	3.98	1.25
Merged-chr3-88477941-3	chr3	88477438	88478438	+	823.6611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15374.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	5.72	5.07	0.92	2.7	1.4	0.8	2.11	3.1	3.75
Merged-chr15-63965572-2	chr15	63965070	63966070	+	823.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360038, intron 2 of 11)	intron (NM_001360038, intron 2 of 11)	32496.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	16.02	18.43	15.72	19.57	13.53	15.27	16.9	14.59	21.23
Merged-chr10-125745017-4	chr10	125744535	125745535	+	823.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-221184.0	NM_177152	320398.0	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	19.45	29.49	19.42	26.31	34.52	29.74	21.12	20.34	18.74
Merged-chr17-69265472-3	chr17	69264969	69265969	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 12 of 21)	intron (NM_001355736, intron 12 of 21)	11737.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	10.3	6.91	12.95	6.07	9.8	11.25	7.39	12.82	8.74
Merged-chr14-120835208-3	chr14	120834699	120835699	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-75995.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	8.58	4.15	4.62	4.05	0.0	6.43	6.34	12.82	8.12
Merged-chr13-59867408-3	chr13	59866914	59867914	+	823.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44267.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	27.46	18.89	24.05	24.29	15.39	20.09	30.63	21.22	9.37
Merged-chr2-69128999-3	chr2	69128498	69129498	+	823.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6802.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	9.72	10.14	5.55	22.94	20.06	6.43	20.07	13.27	28.1
Merged-chr3-96244793-1	chr3	96244293	96245293	+	823.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013549)	promoter-TSS (NM_013549)	-664.0	NM_178212	319192.0	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	300.9	358.49	218.29	354.23	378.34	271.68	344.32	389.99	210.47
Merged-chr2-32757673-2	chr2	32757165	32758165	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290563, intron 14 of 14)	intron (NM_001290563, intron 14 of 14)	431.0	NM_152800	30933.0	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	58.35	56.22	49.95	60.05	40.59	53.05	50.7	39.35	18.74
Merged-chr3-136700818-2	chr3	136700320	136701320	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	30754.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	41.76	31.79	17.57	48.58	50.85	35.37	33.8	29.63	14.99
Merged-chr3-83817818-2	chr3	83817307	83818307	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23801.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	18.88	16.13	10.17	18.22	13.53	21.7	12.67	13.71	13.74
Merged-chr6-136848010-2	chr6	136847512	136848512	+	823.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026639)	TTS (NM_026639)	9588.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	1.72	2.3	11.1	2.02	4.2	4.82	0.0	5.75	2.5
Merged-chr7-127931701-3	chr7	127931212	127932212	+	823.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001319147)	TTS (NM_001319147)	-1599.0	NM_133351	76560.0	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	7.44	6.91	11.1	18.22	16.79	16.08	8.45	4.86	12.49
Merged-chr18-34391011-3	chr18	34390505	34391505	+	823.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-17590.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	2.86	5.99	0.0	8.1	7.0	4.82	9.51	4.42	5.0
Merged-chr2-181240620-3	chr2	181240127	181241127	+	823.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183162, exon 2 of 19)	exon (NM_183162, exon 2 of 19)	1400.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	10.87	12.44	11.1	25.64	10.26	20.09	89.78	86.22	76.19
Merged-chrX-103549711-2	chrX	103549207	103550207	+	823.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	4207.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	7.44	12.9	9.25	6.75	7.93	4.82	9.51	13.27	14.36
Merged-chr10-77891161-3	chr10	77890674	77891674	+	823.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2246.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	10.87	3.23	9.25	8.1	4.67	1.61	2.11	3.98	5.0
Merged-chr3-79789110-2	chr3	79788605	79789605	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51154.0	NM_212452	381489.0	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	8.01	4.15	1.85	1.35	4.67	2.41	7.39	4.42	12.49
Merged-chr4-63119066-2	chr4	63118564	63119564	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028326, intron 12 of 14)	intron (NM_028326, intron 12 of 14)	35108.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	2.29	1.84	9.25	4.72	1.87	0.0	0.0	0.44	2.5
Merged-chr8-26833117-2	chr8	26832549	26833549	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8626.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	20.59	17.05	31.45	25.64	14.46	28.94	44.36	28.3	19.36
Merged-chr19-45651669-2	chr19	45651177	45652177	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	8516.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	40.62	19.35	9.25	47.9	23.33	14.47	21.12	31.39	19.36
Merged-chr17-22360769-2	chr17	22360274	22361274	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347330)	promoter-TSS (NM_001347330)	626.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	27.46	26.73	23.12	22.94	29.39	16.88	30.63	43.33	39.97
Merged-chr13-44480326-2	chr13	44479824	44480824	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40597.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	5.72	3.69	10.17	8.77	6.53	3.22	62.31	45.99	26.85
Merged-chr15-88539074-1	chr15	88538574	88539574	+	823.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61228.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	9.15	1.84	0.92	4.05	5.6	1.61	7.39	3.1	0.0
Merged-chr16-57393413-1	chr16	57392913	57393913	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	40136.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	14.3	11.98	12.02	10.12	10.73	20.09	14.79	19.46	8.74
Merged-chr1-88284397-2	chr1	88283912	88284912	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6833.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	14.87	11.52	23.12	19.57	14.93	12.86	14.79	7.07	14.36
Merged-chr7-115036519-1	chr7	115036019	115037019	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	85245.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	6.86	5.99	0.0	4.05	4.67	3.22	2.11	7.52	5.0
Merged-chr11-9530621-1	chr11	9530121	9531121	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	CT-rich|Low_complexity|Low_complexity	338679.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	16.02	7.37	16.65	20.92	8.86	16.88	19.01	26.09	31.85
Merged-chr15-68053075-1	chr15	68052575	68053575	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	205781.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	8.58	11.98	5.55	12.82	16.33	7.23	7.39	11.94	7.49
Merged-chr3-65538596-1	chr3	65538096	65539096	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178892, intron 2 of 5)	intron (NM_178892, intron 2 of 5)	-9182.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	8.01	15.21	3.7	17.54	18.66	6.43	13.73	25.2	5.62
Merged-chr19-18600404-2	chr19	18599896	18600896	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 2 of 9)	intron (NM_017375, intron 2 of 9)	31417.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	5.72	9.22	2.77	15.52	6.06	12.06	5.28	3.98	6.25
Merged-chr1-97630738-1	chr1	97630238	97631238	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30938.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	8.01	14.75	9.25	33.06	28.92	8.04	38.02	26.97	8.74
Merged-chr3-135440795-1	chr3	135440295	135441295	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356598, intron 2 of 8)	intron (NM_001356598, intron 2 of 8)	1669.0	NM_001356597	66105.0	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	74.37	77.87	48.1	86.36	50.38	57.87	82.38	79.59	54.33
Merged-chr10-67223008-3	chr10	67222524	67223524	+	823.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 8 of 25)	intron (NM_207221, intron 8 of 25)	37274.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	32.04	29.95	36.07	38.46	22.39	29.74	38.02	46.43	19.98
Merged-chr8-124837108-1	chr8	124836608	124837608	+	823.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25921.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	22.31	24.42	19.42	19.57	34.99	46.62	5.28	2.65	9.99
Merged-chr9-18293376-3	chr9	18292880	18293880	+	823.458313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025844, intron 1 of 10)	intron (NM_025844, intron 1 of 10)	1113.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	28.6	55.75	15.72	28.34	42.45	31.35	71.82	65.0	28.1
Merged-chr2-132180566-3	chr2	132180076	132181076	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35256.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.15	13.82	13.87	13.49	8.86	20.9	10.56	9.73	16.86
Merged-chr2-79865475-3	chr2	79864999	79865999	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009978, intron 11 of 12)	intron (NM_001009978, intron 11 of 12)	42900.0	NM_001009979	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.58	2.76	0.0	4.05	4.67	0.0	2.11	1.33	2.5
Merged-chr4-109420900-3	chr4	109420345	109421345	+	823.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	5198.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	5.15	6.91	5.55	7.42	4.67	4.82	6.34	5.75	3.75
Merged-chr13-21011320-2	chr13	21010829	21011829	+	823.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 19 of 20)	intron (NM_012054, intron 19 of 20)	61970.0	NM_146535	258528.0	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	11.44	10.14	26.82	8.1	9.33	16.08	9.51	7.96	11.24
Merged-chr1-192091000-3	chr1	192090493	192091493	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	1606.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	35.47	35.48	39.77	20.92	20.53	24.11	30.63	30.07	24.98
Merged-chr16-55811987-3	chr16	55811485	55812485	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159394, exon 12 of 12)	3' UTR (NM_001159394, exon 12 of 12)	10153.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	21.17	23.04	24.05	12.14	21.46	15.27	19.01	5.31	8.74
Merged-chr8-126583812-1	chr8	126583312	126584312	+	823.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9624.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	147.02	78.33	72.15	209.16	104.5	98.87	129.91	76.49	49.96
Merged-chr13-111461531-1	chr13	111461031	111462031	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361926, intron 2 of 10)	intron (NM_001361926, intron 2 of 10)	28596.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	8.01	8.75	11.1	10.12	3.73	7.23	10.56	5.31	5.0
Merged-chr13-60435139-1	chr13	60434639	60435639	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-166808.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.58	11.06	1.85	15.52	11.2	13.66	16.9	10.61	12.49
Merged-chr4-155710830-1	chr4	155710330	155711330	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026899, intron 1 of 4)	intron (NM_026899, intron 1 of 4)	6015.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	41.19	50.69	47.17	49.25	60.65	45.82	53.87	45.99	28.73
Merged-chr13-91515141-1	chr13	91514641	91515641	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	54044.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	6.86	5.99	3.7	8.77	5.6	4.82	7.39	4.42	5.0
Merged-chr11-30196024-1	chr11	30195524	30196524	+	823.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	2233.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	16.59	21.66	24.05	17.54	16.79	14.47	17.96	17.24	17.49
Merged-chr12-84803876-3	chr12	84803369	84804369	+	823.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	30599.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	44.05	28.57	34.22	41.83	21.93	31.35	35.91	19.9	22.48
Merged-chr14-21999710-3	chr14	21999212	22000212	+	823.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-10111.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	6.86	3.23	11.1	4.72	6.06	6.43	0.0	3.98	2.5
Merged-chr10-39774663-3	chr10	39774168	39775168	+	823.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	42508.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	8.58	11.98	5.55	11.47	6.06	8.04	6.34	5.31	9.99
Merged-chr14-84454263-2	chr14	84453765	84454765	+	823.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013753, intron 1 of 3)	intron (NM_001013753, intron 1 of 3)	10702.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	1.14	5.99	1.85	3.37	4.2	3.22	1.06	4.86	6.25
Merged-chr12-4572044-3	chr12	4571537	4572537	+	823.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20971.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	2.29	3.23	4.62	1.35	3.27	3.22	4.22	3.54	3.12
Merged-chr2-27026957-3	chr2	27026446	27027446	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177627, intron 2 of 8)	intron (NM_001177627, intron 2 of 8)	1052.0	NM_172659	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	8.01	7.83	1.85	20.92	8.86	14.47	27.46	16.8	13.74
Merged-chr14-115017888-3	chr14	115017384	115018384	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25787.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	2.29	3.23	1.85	1.35	2.8	3.22	5.28	1.33	3.75
Merged-chr6-21973655-3	chr6	21973182	21974182	+	823.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023626, exon 12 of 12)	exon (NM_023626, exon 12 of 12)	-12228.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	5.72	6.45	12.95	4.72	8.4	8.04	9.51	4.86	4.37
Merged-chr13-95563725-3	chr13	95563186	95564186	+	823.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38446.0	NM_007974	14063.0	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	13.16	5.99	3.7	5.4	1.87	0.0	4.22	1.33	0.0
Merged-chr11-103332717-3	chr11	103332195	103333195	+	823.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133715, exon 16 of 16)	3' UTR (NM_133715, exon 16 of 16)	12007.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	4.58	6.45	3.7	6.07	1.4	6.43	4.22	2.21	1.25
Merged-chr16-14159971-3	chr16	14159483	14160483	+	823.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081154)	promoter-TSS (NM_001081154)	357.0	NR_030252	723916.0		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	101.25	163.58	133.19	124.82	189.87	176.83	166.88	218.87	106.17
Merged-chr4-108295366-3	chr4	108294848	108295848	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033634, intron 1 of 13)	intron (NM_001033634, intron 1 of 13)	5742.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	14.3	5.99	17.57	8.77	5.13	4.82	9.51	4.42	5.62
Merged-chr1-151683201-3	chr1	151682679	151683679	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	71548.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	9.72	15.21	3.7	12.14	12.6	12.06	11.62	7.52	7.49
Merged-chr3-41599925-3	chr3	41599427	41600427	+	823.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 6 of 10)	B3|SINE|B2	35047.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.15	0.0	0.0	2.7	0.93	0.0	2.11	0.88	5.62
Merged-chr19-38846614-2	chr19	38846118	38847118	+	823.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145952, intron 1 of 12)	intron (NM_145952, intron 1 of 12)	10039.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	7.44	9.68	12.02	12.82	15.39	9.65	8.45	5.75	13.74
Merged-chr14-79034686-2	chr14	79034175	79035175	+	823.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027906, intron 20 of 44)	intron (NM_027906, intron 20 of 44)	164515.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	24.03	16.59	29.6	18.22	16.79	17.68	5.28	4.86	2.5
Merged-chr12-80325261-2	chr12	80324766	80325766	+	823.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64885.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	132.72	112.43	117.47	164.63	148.35	122.18	173.21	189.25	92.43
Merged-chr6-100366006-3	chr6	100365508	100366508	+	823.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78650.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	7.44	5.53	2.77	5.4	1.87	0.0	5.28	3.98	1.87
Merged-chr1-177644376-3	chr1	177643877	177644877	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1434.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	1.14	2.76	0.0	4.05	3.73	0.0	4.22	1.33	2.5
Merged-chr14-47542538-3	chr14	47542096	47543096	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	25838.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	24.6	23.04	41.62	31.71	28.46	45.82	97.17	90.2	54.96
Merged-chr6-112718200-3	chr6	112717687	112718687	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-21517.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	25.74	20.27	20.35	15.52	23.79	36.97	20.07	19.01	13.74
Merged-chr1-57852856-3	chr1	57852354	57853354	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	7283.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	14.87	17.05	5.55	60.05	38.25	32.96	14.79	5.31	8.74
Merged-chr4-155784279-3	chr4	155783795	155784795	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033394, exon 2 of 2)	exon (NM_001033394, exon 2 of 2)	1579.0	NM_001033394	320587.0	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	12.59	1.84	1.85	12.14	4.67	9.65	9.51	3.1	4.37
Merged-chr10-63309193-3	chr10	63308694	63309694	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	29841.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	8.01	3.23	5.55	11.47	1.87	4.82	7.39	2.65	8.12
Merged-chr3-61688480-3	chr3	61687993	61688993	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	323986.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	8.58	4.61	1.85	2.7	6.53	4.82	2.11	5.75	1.25
Merged-chrX-74244786-3	chrX	74244260	74245260	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290421, intron 1 of 46)	intron (NM_001290421, intron 1 of 46)	1774.0	NM_010227	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	43.48	58.52	30.52	45.88	31.26	29.74	28.52	52.62	38.1
Merged-chr5-135722352-3	chr5	135721841	135722841	+	823.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 2 of 15)	intron (NM_008898, intron 2 of 15)	13548.0	NR_106001	102466791.0		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	11.44	7.37	7.4	15.52	6.06	6.43	20.07	7.96	12.49
Merged-chr9-52168891-3	chr9	52168375	52169375	+	823.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162921)	promoter-TSS (NM_001162921)	-764.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	13.73	10.6	3.7	12.82	2.33	4.82	4.22	0.0	3.75
Merged-chr11-34043023-3	chr11	34042535	34043535	+	823.061096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-3893.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	25.74	10.6	11.1	16.87	11.2	9.65	12.67	11.05	10.62
Merged-chr13-56296467-3	chr13	56295964	56296964	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019568)	promoter-TSS (NM_019568)	87.0	NM_019568	57266.0	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	9.15	1.38	0.92	11.47	4.67	12.06	11.62	1.33	5.0
Merged-chr15-90963490-3	chr15	90962975	90963975	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016705, intron 22 of 32)	GA-rich|Low_complexity|Low_complexity	-64999.0	NR_033583	20738.0	Mm.431547	NR_033583	ENSMUSG00000116210	Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	5.15	2.76	8.32	6.75	4.2	8.04	6.34	0.44	9.99
Merged-chr5-5320973-3	chr5	5320475	5321475	+	823.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-54907.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	73.79	102.75	46.25	35.76	35.92	27.33	64.43	97.28	70.57
Merged-chr11-23124585-3	chr11	23124088	23125088	+	823.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCCCG)n|Simple_repeat|Simple_repeat	-27552.0	NR_131065	76993.0	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	12.01	1.38	1.85	6.07	1.87	1.61	2.11	5.31	2.5
Merged-chr3-109264711-1	chr3	109264211	109265211	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75972.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	16.02	8.75	11.1	10.12	7.93	9.65	14.79	9.29	21.23
Merged-chr3-41260240-1	chr3	41259740	41260740	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-177194.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	1.14	3.69	5.55	0.67	0.47	0.0	2.11	1.77	0.0
Merged-chr6-94532313-1	chr6	94531813	94532813	+	823.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026255, intron 3 of 9)	Lx8|LINE|L1	31999.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	4.58	4.61	3.7	0.67	3.73	8.04	9.51	5.75	5.0
Merged-chr15-36282151-1	chr15	36281651	36282651	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357631, intron 1 of 7)	intron (NM_001357631, intron 1 of 7)	996.0	NM_013923	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	41.19	44.7	44.4	40.48	53.18	43.4	32.74	35.37	44.34
Merged-chr13-33951497-1	chr13	33950997	33951997	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-13162.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	12.59	7.37	12.95	10.12	11.2	18.49	10.56	5.75	9.99
Merged-chr3-8770908-1	chr3	8770408	8771408	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103870.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.58	2.3	9.25	11.47	9.33	13.66	6.34	6.63	10.62
Merged-chr16-70586772-1	chr16	70586272	70587272	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-29653.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.57	5.99	1.85	1.35	2.8	1.61	4.22	4.42	9.99
Merged-chr1-16519863-3	chr1	16519332	16520332	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025303)	promoter-TSS (NM_025303)	-530.0	NM_001347045	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	14.3	3.69	11.1	23.62	7.46	8.84	13.73	0.44	3.75
Merged-chrX-164590384-1	chrX	164589884	164590884	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92481.0	NM_027027	69299.0	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	2.29	5.07	0.0	5.4	2.33	5.63	1.06	3.54	2.5
Merged-chr13-110471752-2	chr13	110471244	110472244	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76700.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.29	2.3	2.77	4.05	2.8	3.22	6.34	1.77	1.87
Merged-chr17-23187367-2	chr17	23186872	23187872	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357697, intron 3 of 5)	intron (NM_001357697, intron 3 of 5)	5856.0	NM_009555	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	4.58	8.75	7.4	2.02	13.06	15.27	10.56	5.31	2.5
Merged-chr17-56849020-3	chr17	56848554	56849554	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039114, intron 10 of 14)	B1_Mus1|SINE|Alu	-18046.0	NM_027787	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	1.14	2.76	8.32	6.07	3.27	3.22	8.45	1.77	1.25
Merged-chr19-10833836-3	chr19	10833354	10834354	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-3796.0	NM_009852	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	5.72	6.91	9.25	10.8	7.46	11.25	11.62	6.63	9.37
Merged-chrX-103477660-1	chrX	103477160	103478160	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_001570, exon 1 of 8)	non-coding (NR_001570, exon 1 of 8)	5573.0	NR_001570	213742.0	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	2.29	0.46	1.85	1.35	0.47	0.0	1.06	0.44	0.0
Merged-chr15-13370900-1	chr15	13370400	13371400	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197225.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	8.01	10.6	7.4	12.14	12.6	6.43	6.34	13.71	23.11
Merged-chr1-77464299-1	chr1	77463799	77464799	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	32469.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.15	2.76	3.7	1.35	3.73	6.43	3.17	5.75	3.12
Merged-chr12-102694991-3	chr12	102694483	102695483	+	823.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	9886.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	155.6	166.34	118.39	96.48	118.03	129.41	158.43	205.61	95.55
Merged-chr16-21616007-2	chr16	21615507	21616507	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	B3|SINE|B2	78658.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	8.58	10.6	7.4	11.47	8.4	24.92	12.67	9.73	7.49
Merged-chr10-35347588-1	chr10	35347088	35348088	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	864188.0	NM_010237	14302.0	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	4.0	4.61	1.85	6.07	8.4	9.65	11.62	5.31	5.0
Merged-chr7-89405105-1	chr7	89404605	89405605	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360746)	promoter-TSS (NM_001360746)	739.0	NM_008055	14366.0	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	22.88	11.98	30.52	26.99	25.19	16.08	13.73	5.75	4.37
Merged-chrX-166499680-1	chrX	166499180	166500180	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001007577)	TTS (NM_001007577)	10798.0	NM_001007577	245695.0	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	6.86	10.6	4.62	12.82	14.93	8.04	12.67	12.82	5.0
Merged-chr18-21593943-1	chr18	21593443	21594443	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081403, intron 2 of 7)	intron (NM_001081403, intron 2 of 7)	-57622.0	NM_001271580	74644.0	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.57	2.76	0.0	1.35	3.27	3.22	1.06	1.33	5.0
Merged-chr4-35950149-1	chr4	35949649	35950649	+	823.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 7 of 8)	MLT1G1|LTR|ERVL-MaLR	-104945.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	4.58	2.3	5.55	5.4	9.33	10.45	3.17	6.19	5.0
Merged-chr4-48592889-4	chr4	48592319	48593319	+	822.979187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	7645.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	18.88	12.9	14.8	9.45	9.8	24.92	16.9	8.4	25.61
Merged-chr5-53591189-3	chr5	53590689	53591689	+	822.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359152, intron 1 of 9)	CpG	703.0	NM_001080927	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	32.61	20.27	5.55	33.06	8.86	16.08	36.97	16.36	13.12
Merged-chr18-75473388-3	chr18	75472869	75473869	+	822.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-41276.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	28.6	33.64	26.82	22.27	27.52	25.72	17.96	9.73	8.74
Merged-chr14-64050630-3	chr14	64050137	64051137	+	822.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34773.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	9.72	11.98	14.8	10.12	11.2	20.09	9.51	7.52	1.25
Merged-chr15-78851975-3	chr15	78851473	78852473	+	822.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025622, intron 2 of 3)	intron (NM_025622, intron 2 of 3)	3556.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	3.43	1.84	0.0	3.37	0.93	4.82	1.06	1.77	1.25
Merged-chr13-94794290-3	chr13	94793797	94794797	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	5354.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	13.73	8.75	6.47	10.8	5.6	11.25	10.56	10.17	3.75
Merged-chr3-9751665-3	chr3	9751165	9752165	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	82014.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	29.75	30.87	32.37	54.65	45.72	36.17	31.69	33.6	15.61
Merged-chr11-78323090-3	chr11	78322663	78323663	+	822.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303423)	promoter-TSS (NM_001303423)	90.0	NM_001303423	11676.0	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	13.73	5.99	9.25	7.42	7.0	3.22	8.45	3.1	11.24
Merged-chr4-59821722-2	chr4	59821213	59822213	+	822.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L1MA9|LINE|L1	16063.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	25.74	35.02	26.82	25.64	16.79	25.72	28.52	26.09	6.25
Merged-chr19-9110407-3	chr19	9109896	9110896	+	822.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22440.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	2.29	6.45	1.85	6.75	0.0	1.61	4.22	0.44	2.5
Merged-chr10-62187122-3	chr10	62186611	62187611	+	822.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_197996, exon 8 of 8)	3' UTR (NM_197996, exon 8 of 8)	7116.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	17.73	3.69	12.02	8.77	6.53	4.82	5.28	2.65	5.0
Merged-chr2-130491794-2	chr2	130491279	130492279	+	822.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	41501.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	98.39	75.57	61.97	271.91	184.74	176.83	106.67	87.55	81.19
Merged-chr11-44516450-2	chr11	44515953	44516953	+	822.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2511.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	10.87	4.61	7.4	5.4	3.73	9.65	5.28	6.19	5.0
Merged-chr18-73749606-2	chr18	73749114	73750114	+	822.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	4865.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	5.15	11.52	22.2	7.42	5.13	20.09	9.51	4.86	19.98
Merged-chr2-120111053-3	chr2	120110552	120111552	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 3 of 5)	MIR|SINE|MIR	43523.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	27.46	32.72	37.0	35.09	32.66	33.76	23.24	17.69	7.49
Merged-chr2-133020664-3	chr2	133020170	133021170	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74634.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	5.15	11.06	16.65	11.47	7.93	8.84	16.9	4.86	13.74
Merged-chr5-100557204-3	chr5	100556711	100557711	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	14994.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	8.58	8.29	11.1	4.05	6.06	7.23	97.17	110.1	64.33
Merged-chr13-113022657-1	chr13	113022157	113023157	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12722.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	3.43	2.3	0.0	1.35	1.87	1.61	1.06	1.33	3.75
Merged-chr7-44561220-3	chr7	44560728	44561728	+	822.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7263.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	2.86	2.76	1.85	3.37	1.87	1.61	2.11	0.0	0.0
Merged-chr6-113469286-3	chr6	113468775	113469775	+	822.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145826, intron 14 of 14)	intron (NM_145826, intron 14 of 14)	-2180.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	8.58	7.37	11.1	12.82	6.53	12.06	10.56	7.52	6.87
Merged-chr1-88262494-2	chr1	88262001	88263001	+	822.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040291)	TTS (NR_040291)	6907.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	7.44	19.35	12.95	13.49	11.2	26.53	9.51	11.5	29.98
Merged-chr11-120571295-3	chr11	120570762	120571762	+	822.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011032, intron 2 of 10)	intron (NM_011032, intron 2 of 10)	1991.0	NM_011032	18453.0	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	24.6	22.12	21.27	107.28	75.11	81.18	22.18	10.17	17.49
Merged-chr11-54762854-3	chr11	54762366	54763366	+	822.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	24837.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	26.31	33.18	30.52	52.63	29.39	24.92	31.69	14.15	24.98
Merged-chr19-61017672-2	chr19	61017179	61018179	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	123161.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	10.87	10.6	10.17	14.17	8.4	17.68	4.22	6.19	3.75
Merged-chr12-54791569-2	chr12	54791079	54792079	+	822.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	intron (NM_026998, intron 2 of 13)	4083.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	28.03	38.71	49.95	41.16	26.59	48.23	64.43	39.8	43.09
Merged-chr15-59774233-1	chr15	59773733	59774733	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20726.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	9.15	6.91	5.55	4.05	5.6	5.63	5.28	7.52	6.25
Merged-chr2-75609683-2	chr2	75609209	75610209	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49550.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.43	2.3	0.0	2.7	2.33	9.65	4.22	5.31	9.37
Merged-chr11-116648747-1	chr11	116648247	116649247	+	822.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	5566.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	28.6	41.47	27.75	43.86	50.38	48.23	16.9	14.59	9.99
Merged-chr5-109845096-3	chr5	109844596	109845596	+	822.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10954.0	NR_027964	667213.0	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	3.43	11.52	3.7	7.42	3.27	11.25	6.34	15.92	10.62
Merged-chrX-73571289-3	chrX	73570788	73571788	+	822.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177236, exon 21 of 21)	3' UTR (NM_177236, exon 21 of 21)	-68153.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	10.87	5.07	7.4	7.42	7.0	9.65	10.56	7.52	3.75
Merged-chr5-21043099-2	chr5	21042607	21043607	+	822.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011203, intron 1 of 17)	ORR1F|LTR|ERVL-MaLR	-7860.0	NM_001356590	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	18.88	12.9	14.8	18.22	9.8	16.08	27.46	32.72	16.86
Merged-chr15-79224884-3	chr15	79224396	79225396	+	822.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4277.0	NM_008837	18693.0	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	9.15	2.76	0.0	4.05	0.93	1.61	4.22	0.88	1.25
Merged-chr15-75090038-1	chr15	75089538	75090538	+	822.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21899.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	2.86	4.15	7.4	2.7	0.0	0.0	3.17	3.1	0.0
Merged-chr6-116458980-3	chr6	116458478	116459478	+	822.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	2200.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	9.15	19.81	1.85	18.89	9.33	16.08	12.67	7.52	18.11
Merged-chr5-32721106-1	chr5	32720606	32721606	+	822.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25236.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	2.29	2.3	3.7	2.02	1.87	2.41	3.17	0.88	5.0
Merged-chr1-97633090-3	chr1	97632598	97633598	+	822.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28578.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	16.02	11.06	12.02	16.19	22.39	15.27	12.67	13.27	6.87
Merged-chr7-73546721-1	chr7	73546221	73547221	+	822.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037569, intron 4 of 4)	intron (NR_037569, intron 4 of 4)	-4975.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	29.75	27.19	37.0	21.59	31.26	34.56	43.3	32.72	22.48
Merged-chr2-52573708-3	chr2	52573276	52574276	+	822.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-15165.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	14.87	23.96	27.75	9.45	8.86	22.51	6.34	8.4	3.12
Merged-chr6-143139676-3	chr6	143139146	143140146	+	822.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	14285.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	13.16	9.22	5.55	10.8	7.0	7.23	22.18	7.52	1.25
Merged-chr16-76002495-2	chr16	76001972	76002972	+	822.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155447, intron 2 of 3)	intron (NR_155447, intron 2 of 3)	1688.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	7.44	7.37	1.85	4.72	4.67	19.29	7.39	4.86	9.99
Merged-chr12-17693148-3	chr12	17692660	17693660	+	822.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	2351.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	24.6	46.54	49.02	24.29	19.59	32.15	66.54	30.51	31.85
Merged-chr2-27504650-1	chr2	27504150	27505150	+	822.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10497.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	13.16	7.37	18.5	26.99	26.12	35.37	30.63	26.53	10.62
Merged-chr13-48966179-3	chr13	48965680	48966680	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1648.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	101.25	149.75	110.07	97.83	105.9	118.16	158.43	193.67	115.54
Merged-chr16-55781396-3	chr16	55780875	55781875	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40763.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	10.3	7.83	9.25	12.14	4.2	6.43	14.79	6.63	5.0
Merged-chr1-143998078-3	chr1	143997549	143998549	+	822.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6100.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	14.3	16.13	22.2	18.89	8.4	11.25	9.51	7.52	8.12
Merged-chr4-120061903-2	chr4	120061395	120062395	+	822.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-99311.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	8.58	2.76	3.7	16.87	12.13	8.04	9.51	5.75	2.5
Merged-chr14-27142869-2	chr14	27142350	27143350	+	822.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1143.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	2.86	3.23	0.0	9.45	1.4	4.82	5.28	1.77	0.0
Merged-chr9-118609481-2	chr9	118608989	118609989	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	2780.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	157.31	217.95	105.44	151.81	179.14	159.95	192.23	244.52	117.41
Merged-chr14-31434509-1	chr14	31434009	31435009	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 1 of 8)	intron (NM_011894, intron 1 of 8)	1591.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	92.1	133.17	81.4	133.59	123.16	116.55	162.65	157.85	97.43
Merged-chr3-84675864-1	chr3	84675364	84676364	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	9672.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.43	3.69	4.62	9.45	5.6	10.45	9.51	1.33	3.75
Merged-chr14-120830554-2	chr14	120830076	120831076	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-80618.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	3.43	2.3	0.0	1.35	0.47	3.22	2.11	1.77	5.62
Merged-chr18-13122304-2	chr18	13121808	13122808	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115318.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	2.86	3.23	3.7	4.05	4.2	0.0	3.17	1.33	3.75
Merged-chr9-58210163-3	chr9	58209687	58210687	+	822.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5868.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	5.72	2.3	4.62	7.42	6.53	11.25	4.22	6.19	6.87
Merged-chr17-12367594-1	chr17	12367094	12368094	+	822.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11015.0	NM_008877	18815.0	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	1.72	3.23	1.85	1.35	1.87	0.0	4.22	1.77	1.25
Merged-chrX-23694328-2	chrX	23693825	23694825	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	1274.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	31.46	35.48	28.67	29.69	17.73	20.9	35.91	39.35	23.73
Merged-chr8-94184512-3	chr8	94184002	94185002	+	822.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5413.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	15.45	7.83	13.87	16.19	9.33	6.43	19.01	11.5	8.12
Merged-chr3-144498551-1	chr3	144498051	144499051	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	71665.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	5.72	7.83	0.92	10.8	8.4	4.82	3.17	0.88	2.5
Merged-chr1-170608802-1	chr1	170608302	170609302	+	822.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18953.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.72	2.76	1.85	16.19	5.13	3.22	10.56	7.52	6.87
Merged-chr15-5607686-3	chr15	5607121	5608121	+	822.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111303.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	13.73	15.67	14.8	16.87	12.6	12.86	23.24	15.48	7.49
Merged-chr6-70804787-3	chr6	70804283	70805283	+	822.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	6.29	7.37	5.55	3.37	5.13	2.41	5.28	9.73	1.87
Merged-chr15-80564353-3	chr15	80563861	80564861	+	822.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NM_001163189	383075.0	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	17.16	18.43	16.65	19.57	12.6	15.27	16.9	18.57	17.49
Merged-chr5-24686847-2	chr5	24686306	24687306	+	822.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305264, intron 1 of 14)	B1_Mur2|SINE|Alu	991.0	NM_001305264	53312.0	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	111.55	196.29	123.94	217.93	235.59	167.19	253.48	374.96	138.65
Merged-chr4-136149729-6	chr4	136149189	136150189	+	822.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	5867.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	20.59	11.06	8.32	14.17	8.86	8.04	25.35	8.84	6.25
Merged-chr5-121546743-3	chr5	121546226	121547226	+	822.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010765)	promoter-TSS (NM_010765)	-834.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	94.96	90.77	53.65	87.71	104.03	78.77	89.78	120.71	56.83
Merged-chr1-37860528-3	chr1	37860043	37861043	+	822.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290720, intron 1 of 17)	ORR1B2|LTR|ERVL-MaLR	4539.0	NM_207228	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	9.15	3.69	0.0	8.1	3.73	3.22	6.34	1.77	8.74
Merged-chr8-115046650-3	chr8	115046158	115047158	+	822.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	607006.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	13.73	5.07	11.1	12.14	11.2	9.65	9.51	8.84	14.36
Merged-chr3-52512971-2	chr3	52512473	52513473	+	822.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3991.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	2.29	2.3	1.85	3.37	0.47	4.82	3.17	3.98	1.25
Merged-chr11-51900012-2	chr11	51899505	51900505	+	822.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-42375.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.86	3.69	1.85	9.45	8.4	15.27	10.56	9.29	5.0
Merged-chr2-91954024-2	chr2	91953518	91954518	+	822.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	-3670.0	NM_001166597	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	25.74	18.43	24.05	18.22	15.39	26.53	23.24	18.57	29.35
Merged-chr8-109607816-3	chr8	109607307	109608307	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020046, intron 1 of 8)	B3A|SINE|B2	866.0	NM_020046	56749.0	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	17.16	19.35	15.72	18.89	20.53	28.13	22.18	25.65	19.36
Merged-chr9-95567158-3	chr9	95566671	95567671	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7354.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	73.22	52.07	48.1	70.17	48.05	67.52	57.03	52.62	47.46
Merged-chr8-123110842-1	chr8	123110342	123111342	+	822.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5867.0	NR_106047	102465654.0		NR_106047	ENSMUSG00000098550	Mir7079	Gm27278|mmu-mir-7079	microRNA 7079	ncRNA	3.43	1.84	3.7	6.07	0.47	0.0	5.28	3.1	3.12
Merged-chr11-58867225-3	chr11	58866717	58867717	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172403)	promoter-TSS (NM_172403)	-23.0	NM_172403	69944.0	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	11.44	13.36	16.65	17.54	11.66	12.86	25.35	17.69	9.99
Merged-chr19-16107905-1	chr19	16107405	16108405	+	822.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24926.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	7.44	10.6	12.02	5.4	7.93	3.22	25.35	10.61	27.48
Merged-chr14-120741847-3	chr14	120741351	120742351	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169343.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	4.0	11.52	5.55	15.52	22.39	28.13	20.07	10.17	16.86
Merged-chr2-59194788-1	chr2	59194288	59195288	+	822.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	33938.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	24.03	12.9	19.42	24.29	21.46	17.68	26.4	18.57	8.74
Merged-chr1-154062778-1	chr1	154062278	154063278	+	822.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138409.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	3.43	10.6	1.85	20.24	14.46	12.06	2.11	7.52	8.74
Merged-chr17-34280483-1	chr17	34279983	34280983	+	822.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7288.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	6.29	3.69	1.85	2.02	0.47	1.61	3.17	1.77	8.74
Merged-chr15-38661077-3	chr15	38660560	38661560	+	822.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025494)	promoter-TSS (NM_025494)	-844.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	67.5	73.26	49.02	82.32	64.84	43.4	82.38	94.18	48.71
Merged-chr10-80317204-3	chr10	80316731	80317731	+	822.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011789, exon 14 of 14)	3' UTR (NM_011789, exon 14 of 14)	3317.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	2.86	2.3	5.55	2.02	2.33	3.22	8.45	3.54	13.74
Merged-chr7-65421652-3	chr7	65421084	65422084	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50340.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	7.44	2.76	0.92	4.05	1.4	0.8	7.39	1.77	2.5
Merged-chr13-85376518-3	chr13	85375969	85376969	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86983.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	16.02	20.27	24.05	14.17	19.13	20.09	15.84	20.78	17.49
Merged-chr1-9799156-3	chr1	9798663	9799663	+	822.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	1033.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	80.66	74.19	65.67	62.07	67.64	48.23	104.56	97.72	58.08
Merged-chr3-144695457-2	chr3	144694946	144695946	+	822.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	24889.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	25.74	44.7	42.55	50.6	41.52	39.39	73.93	76.05	34.35
Merged-chr5-43861339-2	chr5	43860837	43861837	+	822.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7472.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	8.01	8.29	10.17	13.49	3.73	6.43	10.56	3.98	11.87
Merged-chr8-90961774-3	chr8	90961277	90962277	+	822.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 4 of 39)	intron (NM_177224, intron 4 of 39)	29528.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	24.6	34.56	25.9	24.29	27.99	32.15	42.25	30.07	26.85
Merged-chr2-77275290-3	chr2	77274794	77275794	+	822.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	5298.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	14.3	16.13	8.32	10.12	12.13	3.22	10.56	8.4	11.87
Merged-chr10-80340404-3	chr10	80339877	80340877	+	822.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104339, exon 12 of 12)	non-coding (NR_104339, exon 12 of 12)	8071.0	NM_001285435	66548.0	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	5.72	2.3	0.0	6.07	3.27	11.25	8.45	2.65	5.0
Merged-chr1-74243018-3	chr1	74242506	74243506	+	822.205566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	ID_B1|SINE|B4	6489.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	59.49	63.13	51.8	29.69	20.06	36.97	62.31	53.06	34.97
Merged-chr3-101494060-3	chr3	101493548	101494548	+	822.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110659.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.43	3.69	3.7	4.05	1.4	0.8	2.11	2.65	3.75
Merged-chr8-64944999-3	chr8	64944517	64945517	+	822.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2168.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	7.44	4.15	4.62	6.07	0.47	1.61	5.28	3.98	2.5
Merged-chr8-105349103-4	chr8	105348629	105349629	+	822.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081332, exon 1 of 16)	5' UTR (NM_001081332, exon 1 of 16)	871.0	NM_001081332	277973.0	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	42.9	33.18	10.17	56.68	27.99	27.33	35.91	35.37	16.24
Merged-chr7-101882494-3	chr7	101881990	101882990	+	822.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	intron (NM_001291353, intron 1 of 5)	1165.0	NM_001291353	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	26.89	34.56	26.82	49.25	27.06	28.13	55.98	35.82	25.61
Merged-chr5-99578897-3	chr5	99578405	99579405	+	822.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	150155.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	9.15	9.68	14.8	12.82	13.06	12.06	13.73	6.63	5.62
Merged-chr16-49946926-2	chr16	49946411	49947411	+	822.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8919.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	24.6	21.66	11.1	22.27	16.79	13.66	21.12	22.99	11.24
Merged-chr2-153234937-2	chr2	153234439	153235439	+	822.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018807, intron 2 of 2)	Charlie15a|DNA|hAT-Charlie	6419.0	NM_018807	54711.0	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	36.61	45.62	63.82	16.87	12.6	32.15	33.8	28.3	11.87
Merged-chr10-99085099-3	chr10	99084607	99085607	+	822.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21975.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	9.15	5.99	5.55	10.8	2.33	0.0	3.17	3.1	3.12
Merged-chr18-74961332-3	chr18	74960823	74961823	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-60.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	1.72	3.23	7.4	2.02	0.47	3.22	1.06	1.33	3.75
Merged-chr6-72348551-3	chr6	72348093	72349093	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026696, exon 3 of 4)	exon (NM_026696, exon 3 of 4)	1276.0	NM_026696	68364.0	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	66.93	116.12	67.52	84.34	56.91	68.32	120.41	130.0	74.94
Merged-chr4-83306924-3	chr4	83306423	83307423	+	822.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	RSINE1|SINE|B4	17266.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	24.03	20.27	14.8	20.24	10.26	8.04	13.73	15.48	9.99
Merged-chr4-119167844-2	chr4	119167343	119168343	+	822.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6013.0	NM_001145935	195522.0	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	2.29	5.99	0.0	7.42	0.93	4.02	7.39	2.21	1.25
Merged-chr11-121801368-3	chr11	121800883	121801883	+	822.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-28835.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	29.75	23.5	24.97	37.11	17.73	36.97	25.35	21.22	19.98
Merged-chr12-112145443-3	chr12	112145025	112146025	+	822.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097621)	promoter-TSS (NM_001097621)	-683.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.57	2.76	3.7	4.72	1.4	0.0	2.11	1.77	3.75
Merged-chr14-20873523-3	chr14	20873023	20874023	+	822.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36861.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	8.01	4.15	3.7	6.75	6.53	1.61	6.34	2.21	2.5
Merged-chr16-50457191-3	chr16	50456695	50457695	+	822.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24729.0	NM_001347240	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	10.87	4.61	7.4	4.72	9.33	5.63	3.17	4.42	1.25
Merged-chr15-96564035-3	chr15	96563539	96564539	+	822.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	77923.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	10.87	6.45	6.47	10.8	3.73	6.43	5.28	4.42	8.74
Merged-chr7-110184869-3	chr7	110184379	110185379	+	822.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEi|LINE|L1	-36824.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	79.52	76.49	71.22	76.24	64.38	55.46	69.71	73.84	44.34
Merged-chr11-40368094-1	chr11	40367594	40368594	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	324588.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	1.72	2.3	3.7	6.07	6.06	4.82	0.0	3.54	3.12
Merged-chr7-3946304-2	chr7	3945809	3946809	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30808.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	10.87	8.29	11.1	12.14	7.0	18.49	5.28	1.77	12.49
Merged-chr2-125594177-3	chr2	125593697	125594697	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081091, intron 13 of 27)	intron (NM_001081091, intron 13 of 27)	30916.0	NM_001081091	99100.0	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	7.44	14.28	17.57	10.12	4.67	9.65	3.17	4.42	5.62
Merged-chr10-30773443-1	chr10	30772943	30773943	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	29883.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	12.01	17.51	19.42	25.64	13.06	12.86	6.34	12.38	5.0
Merged-chr5-121215540-1	chr5	121215040	121216040	+	822.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4679.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	7.44	1.84	1.85	4.72	3.73	2.41	8.45	7.07	0.0
Merged-chr8-56614465-1	chr8	56613965	56614965	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63331.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.0	3.23	7.4	1.35	7.93	0.0	3.17	5.31	3.75
Merged-chr6-129237604-3	chr6	129237103	129238103	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	442.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	191.07	167.73	177.59	179.47	102.17	118.16	262.99	234.79	138.02
Merged-chr2-165403479-1	chr2	165402979	165403979	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-3085.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	44.05	37.32	32.37	29.01	33.59	54.66	31.69	16.8	16.86
Merged-chr16-20014270-1	chr16	20013770	20014770	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-31221.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	12.59	3.23	7.4	8.77	1.87	13.66	6.34	3.98	5.62
Merged-chr13-113807770-1	chr13	113807270	113808270	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	MTD|LTR|ERVL-MaLR	13262.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	55.49	31.33	25.9	1.35	4.2	3.22	4.22	2.65	1.25
Merged-chrX-167912108-1	chrX	167911608	167912608	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 3 of 19)	intron (NM_001033330, intron 3 of 19)	-57031.0	NM_001290428	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	3.43	0.46	1.85	0.67	2.8	1.61	3.17	0.88	4.37
Merged-chr7-98318396-1	chr7	98317896	98318896	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	intron (NM_001360615, intron 1 of 10)	2812.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	16.59	11.98	19.42	14.84	12.6	11.25	8.45	4.86	6.25
Merged-chr4-108546247-1	chr4	108545747	108546747	+	822.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 25 of 30)	intron (NM_175472, intron 25 of 30)	33089.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	5.72	5.99	7.4	5.4	6.06	1.61	19.01	12.82	7.49
Merged-chr15-30614561-1	chr15	30614061	30615061	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-424565.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	3.43	4.15	1.85	9.45	11.66	16.08	3.17	3.98	4.37
Merged-chr17-56264240-3	chr17	56263742	56264742	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010192)	TTS (NM_010192)	7449.0	NM_010192	14154.0	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	19.45	12.44	9.25	16.19	8.4	9.65	17.96	11.05	23.11
Merged-chr2-31076024-2	chr2	31075526	31076526	+	822.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	intron (NM_001355105, intron 6 of 15)	20474.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	92.67	106.9	36.07	115.38	120.36	119.76	48.58	89.76	46.84
Merged-chr1-54829430-1	chr1	54828930	54829930	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	96957.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	16.59	3.23	7.4	14.17	7.0	12.86	5.28	9.29	1.25
Merged-chr2-23092545-1	chr2	23092045	23093045	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149742, intron 8 of 12)	(CA)n|Simple_repeat|Simple_repeat	23473.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	3.43	5.99	3.7	8.1	4.67	4.82	6.34	3.1	3.75
Merged-chr18-32833134-1	chr18	32832634	32833634	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045381, exon 2 of 5)	non-coding (NR_045381, exon 2 of 5)	-4091.0	NM_001110016	225348.0	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	16.59	17.51	17.57	18.89	20.53	21.7	12.67	13.71	9.37
Merged-chr7-118855258-1	chr7	118854758	118855758	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081446)	promoter-TSS (NM_001081446)	355.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	52.06	56.22	77.7	41.83	56.91	42.6	55.98	27.41	19.98
Merged-chr10-13687404-1	chr10	13686904	13687904	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 4 of 5)	intron (NM_025446, intron 4 of 5)	-134262.0	NM_001347361	56535.0	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	8.58	14.75	12.02	18.89	14.93	14.47	7.39	6.63	6.25
Merged-chr18-37993203-1	chr18	37992703	37993703	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139206, intron 4 of 32)	L2|LINE|L2	-2258.0	NR_105946	102466913.0		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	3.43	2.3	1.85	3.37	2.8	11.25	5.28	1.77	1.25
Merged-chr13-37692560-1	chr13	37692060	37693060	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133478.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.58	3.69	5.55	10.8	2.8	9.65	11.62	5.75	2.5
Merged-chr1-154090028-1	chr1	154089528	154090528	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-111159.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	24.03	17.51	24.05	13.49	15.86	27.33	15.84	12.82	16.24
Merged-chr2-156147468-1	chr2	156146968	156147968	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291114, exon 17 of 17)	3' UTR (NM_001291114, exon 17 of 17)	3235.0	NM_025946	67067.0	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	18.31	12.44	7.4	64.77	45.25	36.97	12.67	20.34	14.99
Merged-chr8-91082618-1	chr8	91082118	91083118	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282000, intron 4 of 20)	intron (NM_001282000, intron 4 of 20)	12561.0	NM_001282000	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	26.31	15.21	12.02	46.56	27.52	57.07	15.84	8.4	8.74
Merged-chr12-35392375-2	chr12	35391873	35392873	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142616.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	8.58	8.75	7.4	8.77	9.8	4.02	9.51	6.63	6.87
Merged-chr17-65961701-1	chr17	65961201	65962201	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10514.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	3.43	4.15	7.4	5.4	3.27	4.02	3.17	3.98	1.25
Merged-chr6-13681035-1	chr6	13680535	13681535	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3069.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	5.72	8.75	7.4	3.37	7.93	8.84	7.39	3.54	13.12
Merged-chr15-63617473-1	chr15	63616973	63617973	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137865.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	56.63	52.53	56.42	77.59	50.85	51.44	57.03	35.37	28.1
Merged-chr6-115534897-1	chr6	115534397	115535397	+	822.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9807.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	9.72	13.36	23.12	20.92	16.33	10.45	9.51	14.59	3.12
Merged-chr9-50849460-3	chr9	50848959	50849959	+	821.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	2.29	8.75	1.85	4.72	2.8	0.0	2.11	2.21	2.5
Merged-chr6-58611973-3	chr6	58611448	58612448	+	821.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011920, intron 1 of 15)	RMER17C2|LTR|ERVK	15276.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	9.72	6.45	8.32	6.07	10.26	14.47	7.39	11.94	6.25
Merged-chr10-88334134-3	chr10	88333636	88334636	+	821.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 4 of 6)	intron (NM_027878, intron 4 of 6)	22939.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	75.51	102.75	91.57	83.66	71.84	71.54	138.36	123.36	74.94
Merged-chr16-8671007-3	chr16	8670504	8671504	+	821.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025821, intron 1 of 3)	intron (NM_025821, intron 1 of 3)	1149.0	NM_025821	52502.0	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	17.16	13.82	14.8	27.66	19.13	38.58	20.07	19.01	28.1
Merged-chr11-103102200-2	chr11	103101668	103102668	+	821.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152813)	promoter-TSS (NM_152813)	480.0	NM_025988	67131.0	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	85.81	97.23	28.67	93.79	136.69	75.56	52.81	43.33	30.6
Merged-chr18-54900088-3	chr18	54899600	54900600	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 3 of 8)	intron (NM_001360787, intron 3 of 8)	90080.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	54.35	59.9	35.15	89.06	48.52	56.27	83.44	87.99	53.71
Merged-chr11-97408402-3	chr11	97407903	97408903	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41757.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	4.58	4.61	1.85	6.07	2.33	3.22	1.06	0.88	2.5
Merged-chr3-104994746-3	chr3	104994227	104995227	+	821.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33018.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	48.62	43.77	30.52	52.63	37.79	49.83	46.47	31.39	21.86
Merged-chr18-38354282-2	chr18	38353764	38354764	+	821.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15271.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	30.89	23.04	21.27	36.43	31.26	47.42	43.3	36.7	30.6
Merged-chr6-137649275-3	chr6	137648794	137649794	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271588)	promoter-TSS (NM_001271588)	-9.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	25.74	9.68	5.55	4.72	2.8	2.41	2.11	2.21	4.37
Merged-chr2-60323602-3	chr2	60323100	60324100	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 24 of 34)	intron (NM_013825, intron 24 of 34)	-39116.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	13.16	2.76	2.77	5.4	7.93	6.43	2.11	3.98	6.25
Merged-chr8-11471513-2	chr8	11471015	11472015	+	821.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	L1M2|LINE|L1	-6414.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	24.03	23.5	23.12	21.59	19.59	22.51	25.35	20.78	27.48
Merged-chr4-116202949-3	chr4	116202458	116203458	+	821.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-18458.0	NM_001355585	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	32.61	26.26	31.45	31.71	29.86	32.96	44.36	49.52	20.61
Merged-chr10-8890688-2	chr10	8890198	8891198	+	821.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4628.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.15	9.68	6.47	18.89	9.8	4.82	4.22	6.63	4.37
Merged-chr10-14678513-2	chr10	14678011	14679011	+	821.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025418, intron 4 of 7)	intron (NM_025418, intron 4 of 7)	26978.0	NM_025418	66201.0	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	11.44	10.14	24.05	14.17	11.66	24.11	11.62	13.27	6.25
Merged-chr19-56423101-3	chr19	56422506	56423506	+	821.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 2 of 6)	intron (NM_007611, intron 2 of 6)	25877.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	4.58	4.15	6.47	4.05	2.33	12.86	5.28	6.63	3.75
Merged-chr1-34850767-3	chr1	34850362	34851362	+	821.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145516, intron 1 of 7)	intron (NM_145516, intron 1 of 7)	873.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	97.25	99.07	112.84	135.62	108.7	147.9	204.9	166.25	135.52
Merged-chr9-37243034-1	chr9	37242534	37243534	+	821.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	12704.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	4.0	5.99	12.95	4.05	5.6	7.23	8.45	2.21	2.5
Merged-chr16-46497317-1	chr16	46496817	46497817	+	821.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021497)	promoter-TSS (NM_021497)	-350.0	NM_021497	58998.0	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	1.72	1.38	7.4	2.7	0.93	0.0	0.0	0.44	2.5
Merged-chr10-21945010-3	chr10	21944508	21945508	+	821.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-33664.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	33.75	33.18	33.3	54.65	33.59	61.89	46.47	35.37	53.71
Merged-chr6-108736365-3	chr6	108735868	108736868	+	821.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46691.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.86	4.15	5.55	4.05	4.2	1.61	2.11	3.1	0.0
Merged-chr8-11001366-3	chr8	11000872	11001872	+	821.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-6478.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	8.58	5.07	1.85	7.42	9.33	11.25	4.22	1.33	3.75
Merged-chr13-21711054-3	chr13	21710565	21711565	+	821.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Met-i|tRNA|tRNA	5078.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	28.03	37.32	11.1	18.89	15.86	11.25	23.24	23.88	17.49
Merged-chr8-70821714-3	chr8	70821208	70822208	+	821.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008353)	TTS (NM_008353)	13259.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	5.15	5.07	7.4	6.75	2.8	4.02	5.28	3.54	1.25
Merged-chr12-118748677-3	chr12	118748158	118749158	+	821.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97671.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	1.72	6.45	1.85	8.1	2.33	3.22	4.22	3.98	3.75
Merged-chr6-124414554-3	chr6	124414065	124415065	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360570, intron 1 of 14)	intron (NM_001360570, intron 1 of 14)	298.0	NM_001277330	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	85.24	59.9	70.3	85.01	51.32	52.25	105.62	54.83	28.73
Merged-chr1-67061660-3	chr1	67061132	67062132	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22760.0	NM_021295	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	5.72	4.61	0.0	3.37	0.93	3.22	2.11	1.77	3.75
Merged-chr3-96728440-3	chr3	96727938	96728938	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028925)	promoter-TSS (NM_028925)	827.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	160.18	222.1	173.89	162.61	215.99	155.93	191.17	274.59	150.51
Merged-chr1-172346932-1	chr1	172346432	172347432	+	821.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5722.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	113.84	92.62	67.52	93.11	86.3	94.85	122.52	145.47	75.57
Merged-chr15-50695704-3	chr15	50695208	50696208	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	193341.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	23.45	21.66	10.17	30.36	18.19	51.44	12.67	15.03	8.74
Merged-chr2-142610793-3	chr2	142610300	142611300	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	290664.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	28.03	14.75	23.12	20.92	18.19	21.7	21.12	17.24	18.11
Merged-chr7-127637124-3	chr7	127636633	127637633	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21861.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	13.16	5.53	7.4	6.07	2.33	3.22	9.51	3.98	6.25
Merged-chr9-114329967-3	chr9	114329466	114330466	+	821.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007535)	promoter-TSS (NM_007535)	-169.0	NM_007535	12046.0	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	8.58	6.45	5.55	6.07	5.13	7.23	1.06	2.65	5.62
Merged-chr10-120113655-3	chr10	120113173	120114173	+	821.622192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080446)	promoter-TSS (NM_080446)	-708.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	47.48	72.34	58.27	74.89	85.84	79.58	53.87	50.41	38.1
Merged-chr13-69493214-3	chr13	69492717	69493717	+	821.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40647.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	1.72	0.92	2.77	1.35	0.0	4.82	3.17	3.1	5.0
Merged-chr7-117490879-3	chr7	117490365	117491365	+	821.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	109886.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	25.74	15.67	12.02	14.84	30.79	24.11	16.9	5.75	3.75
Merged-chr3-27198787-3	chr3	27198288	27199288	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	L1MA6|LINE|L1	15784.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	52.06	27.19	19.42	31.04	21.46	9.65	20.07	17.69	18.74
Merged-chr9-94670453-3	chr9	94669954	94670954	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	562.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	64.64	83.4	76.77	97.83	79.77	75.56	100.34	73.84	51.84
Merged-chr7-97842930-3	chr7	97842455	97843455	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011035)	promoter-TSS (NM_011035)	16.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	29.75	25.34	24.97	31.04	16.33	18.49	39.08	52.62	35.6
Merged-chr17-73263246-3	chr17	73262739	73263739	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136057.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	5.72	0.92	3.7	3.37	2.33	4.82	2.11	3.1	6.87
Merged-chr9-44286634-3	chr9	44286135	44287135	+	821.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138955, intron 2 of 14)	MIRc|SINE|MIR	1609.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	8.01	3.23	0.0	6.75	0.93	6.43	6.34	3.1	0.0
Merged-chr12-71864731-3	chr12	71864221	71865221	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	intron (NM_026102, intron 1 of 25)	-24822.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	17.16	19.81	3.7	16.87	22.39	8.84	13.73	22.99	8.74
Merged-chr5-88601426-3	chr5	88600929	88601929	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289777, intron 3 of 14)	Tigger7|DNA|TcMar-Tigger	17916.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	40.62	33.18	14.8	23.62	20.06	21.7	30.63	36.26	11.87
Merged-chr2-137942948-1	chr2	137942448	137943448	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-313636.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	5.72	1.84	1.85	2.7	1.87	0.0	0.0	2.65	1.25
Merged-chr4-101325542-1	chr4	101325042	101326042	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21485.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	9.15	9.22	1.85	12.14	4.2	8.04	12.67	3.98	3.75
Merged-chr17-17915129-2	chr17	17914627	17915627	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27303.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	14.3	13.82	15.72	2.7	2.8	6.43	6.34	11.94	5.0
Merged-chr2-3336003-3	chr2	3335521	3336521	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030063)	promoter-TSS (NM_030063)	-147.0	NM_030063	78245.0	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	6.86	1.38	1.85	2.02	3.73	0.0	5.28	1.33	7.49
Merged-chr17-71836021-2	chr17	71835516	71836516	+	821.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271483, intron 13 of 16)	intron (NM_001271483, intron 13 of 16)	54069.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	53.77	64.97	58.27	57.35	66.71	51.44	2.11	1.77	0.62
Merged-chr16-52093524-1	chr16	52093024	52094024	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61975.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	18.88	17.05	15.72	14.17	18.66	17.68	33.8	29.63	21.86
Merged-chr8-40272435-1	chr8	40271935	40272935	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14518.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	5.72	2.3	0.0	4.05	5.6	0.8	1.06	0.88	3.75
Merged-chr6-66962742-1	chr6	66962242	66963242	+	821.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	65851.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	5.72	5.07	5.55	3.37	1.4	0.0	0.0	1.77	5.62
Merged-chr6-24894776-3	chr6	24894267	24895267	+	821.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36770.0	NM_028957	74468.0	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	8.01	6.45	7.4	9.45	7.46	6.43	11.62	9.73	4.37
Merged-chr10-111102477-3	chr10	111101984	111102984	+	821.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62318.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	54.92	63.13	50.87	68.82	52.25	77.16	47.53	47.75	29.98
Merged-chr11-30184010-3	chr11	30183511	30184511	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	14246.0	NM_009260	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	16.02	16.59	14.8	20.92	2.8	8.04	5.28	4.86	5.0
Merged-chr5-72844544-2	chr5	72844044	72845044	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	L1MB5|LINE|L1	23904.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.15	5.99	2.77	8.1	7.46	12.86	12.67	6.19	1.87
Merged-chr15-81568784-3	chr15	81568243	81569243	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-17471.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	16.59	20.74	36.07	16.87	13.53	16.08	21.12	26.09	25.61
Merged-chr13-111977929-3	chr13	111977441	111978441	+	821.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	110005.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	12.59	7.37	10.17	73.54	48.98	53.85	19.01	17.69	9.99
Merged-chr2-91723579-2	chr2	91723068	91724068	+	821.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6570.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	41.76	43.77	37.92	78.27	67.18	65.11	39.08	70.3	34.35
Merged-chr19-5833995-3	chr19	5833517	5834517	+	821.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	11461.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	21.74	20.27	18.5	34.41	19.13	28.13	12.67	16.8	8.12
Merged-chr16-30532253-3	chr16	30531737	30532737	+	821.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357415, intron 9 of 11)	intron (NM_001357415, intron 9 of 11)	18341.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	6.29	1.38	1.85	6.75	3.27	0.0	5.28	6.63	1.25
Merged-chr12-111039974-2	chr12	111039473	111040473	+	821.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198023, exon 2 of 12)	exon (NM_198023, exon 2 of 12)	175.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	70.93	62.21	49.02	78.94	35.92	52.25	87.66	32.28	38.72
Merged-chr4-53228673-2	chr4	53228172	53229172	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17524.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	86.95	65.43	43.47	105.26	54.11	65.11	82.38	53.06	23.11
Merged-chr8-95349172-3	chr8	95348689	95349689	+	821.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3107.0	NM_008609	17388.0	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	2.86	1.38	7.4	4.72	3.27	2.41	2.11	2.65	1.87
Merged-chr14-27190342-1	chr14	27189842	27190842	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	46349.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	12.59	9.68	14.8	10.8	12.6	13.66	9.51	10.61	5.0
Merged-chr8-84848068-3	chr8	84847581	84848581	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1150.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	58.92	61.28	41.62	89.74	62.05	114.94	111.96	121.15	57.46
Merged-chr19-61052147-1	chr19	61051647	61052647	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	88693.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	26.31	34.1	17.57	24.96	20.06	52.25	19.01	18.13	26.85
Merged-chr18-68145849-1	chr18	68145349	68146349	+	821.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-82097.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.72	6.45	5.55	6.07	3.73	0.8	3.17	3.98	3.75
Merged-chr1-24612749-3	chr1	24612245	24613245	+	821.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25308.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	36.04	34.1	1.85	16.19	4.2	0.0	0.0	0.0	0.0
Merged-chr13-45000982-2	chr13	45000488	45001488	+	821.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 1 of 9)	intron (NM_025772, intron 1 of 9)	1108.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	97.82	84.78	45.32	117.4	107.3	68.32	117.24	88.88	31.85
Merged-chr6-38507258-3	chr6	38506753	38507753	+	821.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-72.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	34.32	37.78	56.42	30.36	27.06	28.13	38.02	42.89	27.48
Merged-chr7-106652046-3	chr7	106651567	106652567	+	821.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7422.0	NM_001277182	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	30.32	37.78	45.32	24.29	17.73	10.45	88.72	114.08	72.45
Merged-chr10-118042861-2	chr10	118042375	118043375	+	821.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-98912.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	17.16	16.59	16.65	22.94	16.33	24.11	3.17	1.77	3.75
Merged-chr9-122349332-2	chr9	122348829	122349829	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2287.0	NR_152865	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	8.58	2.76	3.7	8.77	5.13	9.65	4.22	0.88	3.75
Merged-chr12-75817704-2	chr12	75817189	75818189	+	821.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005510)	promoter-TSS (NM_001005510)	-629.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	17.16	12.44	15.72	14.84	15.39	1.61	11.62	10.17	2.5
Merged-chr9-44083954-1	chr9	44083454	44084454	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198091)	promoter-TSS (NM_198091)	-966.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	20.59	23.96	15.72	34.41	19.13	24.11	24.29	31.84	21.23
Merged-chr17-67115666-1	chr17	67115166	67116166	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	B3|SINE|B2	-89431.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	18.88	13.36	12.95	14.84	29.86	12.86	3.17	4.86	5.62
Merged-chr1-173682437-2	chr1	173681937	173682937	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162938, intron 3 of 6)	intron (NM_001162938, intron 3 of 6)	8757.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	0.0	0.92	0.0	8.77	4.2	1.61	8.45	16.36	29.98
Merged-chr9-63793878-2	chr9	63793396	63794396	+	821.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35902.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	4.61	1.85	10.12	4.2	8.84	3.17	8.84	0.0
Merged-chr12-112630993-2	chr12	112630492	112631492	+	821.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 2 of 12)	MTD|LTR|ERVL-MaLR	10945.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	102.97	89.85	119.32	97.83	66.71	115.75	100.34	89.32	39.97
Merged-chr17-66235326-3	chr17	66234823	66235823	+	821.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111803.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	2.29	1.84	0.0	2.7	1.4	1.61	2.11	0.44	1.25
Merged-chrX-9461492-3	chrX	9460970	9461970	+	821.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007807, intron 3 of 12)	intron (NM_007807, intron 3 of 12)	7854.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	100.68	93.54	70.3	80.97	72.31	101.28	99.28	118.94	44.97
Merged-chr9-57433485-3	chr9	57432970	57433970	+	821.205566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	6266.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	14.3	11.98	12.95	20.24	15.86	16.08	24.29	23.43	17.49
Merged-chr1-173763281-1	chr1	173762781	173763781	+	821.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 1 of 8)	Lx8|LINE|L1	3638.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	8.58	4.15	1.85	0.0	1.87	0.0	20.07	24.76	12.49
Merged-chr19-28659389-1	chr19	28658889	28659889	+	821.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-18835.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	24.03	6.91	5.55	52.63	41.99	42.6	13.73	11.5	5.62
Merged-chr14-25707840-3	chr14	25707342	25708342	+	821.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6560.0	NR_028021	68173.0	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	5.72	9.22	1.85	2.02	5.13	0.8	1.06	0.0	1.25
Merged-chr5-136954522-3	chr5	136953968	136954968	+	821.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347504, intron 1 of 3)	intron (NM_001347504, intron 1 of 3)	1193.0	NM_001347504	66437.0	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	51.48	58.06	67.52	62.75	55.98	76.36	73.93	78.71	73.69
Merged-chr5-148379677-1	chr5	148379177	148380177	+	821.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 1 of 12)	intron (NM_007513, intron 1 of 12)	13138.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	2.29	0.92	9.25	2.7	0.47	3.22	6.34	7.96	8.12
Merged-chr15-85963640-3	chr15	85963152	85964152	+	821.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009886, intron 2 of 34)	MTD|LTR|ERVL-MaLR	70125.0	NM_009886	12614.0	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	2.86	2.76	3.7	5.4	0.93	6.43	2.11	0.44	1.25
Merged-chr7-125599829-3	chr7	125599384	125600384	+	821.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3545.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	42.9	37.32	23.12	33.06	24.26	22.51	22.18	28.3	13.74
Merged-chr7-7188238-4	chr7	7187683	7188683	+	821.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16830.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	3.43	8.75	8.32	2.7	4.2	9.65	5.28	8.4	9.99
Merged-chr1-88653781-2	chr1	88653267	88654267	+	821.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48424.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	56.06	54.83	33.3	53.98	34.52	53.85	41.19	34.05	29.35
Merged-chr14-29966072-3	chr14	29965613	29966613	+	821.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2267.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	34.32	33.18	29.6	29.01	31.26	44.21	63.37	39.8	46.22
Merged-chr19-5840625-3	chr19	5840104	5841104	+	821.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	4874.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	52.63	27.65	46.25	65.45	22.39	50.64	32.74	23.43	26.23
Merged-chr7-64049895-3	chr7	64049368	64050368	+	821.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103967.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	29.17	23.5	19.42	45.21	34.99	41.8	36.97	13.27	12.49
Merged-chr5-32935759-2	chr5	32935273	32936273	+	821.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	intron (NM_001360014, intron 24 of 40)	72052.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	43.48	41.01	27.75	29.69	22.39	34.56	61.26	71.63	52.46
Merged-chr11-117110637-3	chr11	117110123	117111123	+	821.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4549.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	162.46	120.26	56.42	164.63	120.36	98.06	128.85	145.03	64.95
Merged-chr15-59520673-3	chr15	59520173	59521173	+	821.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-127981.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.44	5.07	0.92	10.12	5.6	3.22	7.39	3.1	1.25
Merged-chr10-67291269-2	chr10	67290757	67291757	+	821.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5976.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	113.27	83.86	88.8	151.14	98.43	66.71	183.78	161.83	59.33
Merged-chr7-135871167-3	chr7	135870651	135871651	+	821.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-154772.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	1.14	4.61	0.92	2.7	2.8	6.43	3.17	3.54	2.5
Merged-chr8-120041060-1	chr8	120040560	120041560	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310635, intron 14 of 14)	intron (NM_001310635, intron 14 of 14)	48622.0	NM_001310635	78892.0	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	8.01	3.69	7.4	1.35	6.06	6.43	1.06	1.77	5.0
Merged-chr2-112216138-2	chr2	112215614	112216614	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23727.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	1.72	5.53	1.85	2.7	0.93	2.41	4.22	6.63	5.62
Merged-chr13-40917368-1	chr13	40916868	40917868	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133219)	promoter-TSS (NM_133219)	-266.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	5.72	6.91	0.0	6.75	7.46	1.61	6.34	5.75	6.25
Merged-chr3-137821220-1	chr3	137820720	137821720	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37605.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	15.45	21.2	11.1	22.27	12.6	4.02	11.62	10.61	3.12
Merged-chr4-48109304-1	chr4	48108804	48109804	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15615.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	16.59	22.12	11.1	25.64	24.72	9.65	23.24	30.07	16.86
Merged-chr6-136736004-1	chr6	136735504	136736504	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 12 of 25)	ORR1E|LTR|ERVL-MaLR	45738.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	4.0	3.23	5.55	4.72	3.73	7.23	3.17	5.31	0.0
Merged-chr11-54247542-1	chr11	54247042	54248042	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_009969, exon 4 of 4)	3' UTR (NM_009969, exon 4 of 4)	2357.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	2.86	5.99	1.85	0.0	5.13	1.61	5.28	2.21	3.75
Merged-chr5-9032848-1	chr5	9032348	9033348	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-35702.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	10.87	6.91	2.77	8.1	3.27	3.22	6.34	4.86	8.12
Merged-chr12-57231234-3	chr12	57230739	57231739	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	814.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	97.25	123.95	52.72	95.14	132.95	56.27	130.97	127.79	56.21
Merged-chr16-87452764-1	chr16	87452264	87453264	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx2A|LINE|L1	-2221.0	NM_024258	74112.0	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	17.16	21.66	22.2	7.42	2.33	4.82	3.17	5.75	1.87
Merged-chr5-24051949-1	chr5	24051449	24052449	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-21259.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	2.29	3.23	0.0	27.66	29.86	33.76	3.17	1.33	7.49
Merged-chr10-4096459-1	chr10	4095959	4096959	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170785, intron 24 of 27)	intron (NM_001170785, intron 24 of 27)	116661.0	NR_152620	102632515.0	Mm.416995	NR_152620	ENSMUSG00000111266	Gm30570	-	predicted gene, 30570	ncRNA	12.01	8.29	9.25	6.07	8.86	19.29	5.28	2.65	6.25
Merged-chr3-86839808-1	chr3	86839308	86840308	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001195500, intron 2 of 11)	intron (NM_001195500, intron 2 of 11)	81076.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	23.45	42.39	35.15	3.37	1.4	1.61	3.17	6.19	3.75
Merged-chr4-129928601-2	chr4	129928115	129929115	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22389.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	18.88	9.68	0.0	13.49	8.86	0.0	4.22	3.98	3.12
Merged-chr11-115929948-3	chr11	115929429	115930429	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130454, intron 2 of 18)	intron (NM_130454, intron 2 of 18)	3563.0	NM_130454	170472.0	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	21.74	20.74	17.57	33.06	16.33	6.43	20.07	21.67	18.11
Merged-chr18-3006332-1	chr18	3005832	3006832	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117080.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	31.46	57.6	23.12	24.96	74.17	60.28	17.96	31.39	33.1
Merged-chr13-49169997-2	chr13	49169482	49170482	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17565.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	6.29	2.3	0.0	1.35	1.4	0.0	1.06	0.44	4.37
Merged-chr18-67973749-1	chr18	67973249	67974249	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	40576.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	16.02	12.9	14.8	22.27	22.86	16.08	7.39	7.52	8.12
Merged-chr4-34080102-1	chr4	34079602	34080602	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-30035.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	5.72	9.22	4.62	10.12	5.6	6.43	6.34	6.63	5.0
Merged-chr13-44164489-2	chr13	44164007	44165007	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	43340.0	NR_045285	328235.0	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	10.3	16.59	25.9	24.29	14.46	24.11	26.4	20.78	15.61
Merged-chr12-111653641-1	chr12	111653141	111654141	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 16 of 16)	intron (NM_021516, intron 16 of 16)	18697.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	4.0	1.84	1.85	2.7	1.4	4.82	3.17	2.21	1.25
Merged-chr9-32696910-1	chr9	32696410	32697410	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	868.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	16.02	15.67	12.02	33.06	28.92	22.51	20.07	9.29	10.62
Merged-chr10-98572976-3	chr10	98572477	98573477	+	821.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-221110.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	4.58	2.3	3.7	5.4	3.27	1.61	8.45	5.75	5.0
Merged-chr4-22381920-1	chr4	22381420	22382420	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172988, intron 3 of 8)	intron (NM_172988, intron 3 of 8)	24377.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	3.43	9.68	1.85	6.75	6.06	11.25	8.45	9.29	19.36
Merged-chr12-36308914-1	chr12	36308414	36309414	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5255.0	NM_025312	66042.0	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	6.29	7.83	3.7	7.42	9.33	8.04	14.79	8.4	11.87
Merged-chr4-44292784-1	chr4	44292284	44293284	+	821.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8133.0	NM_010790	17279.0	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	6.29	1.84	0.92	4.05	2.33	6.43	9.51	4.42	0.0
Merged-chr17-5150881-1	chr17	5150381	5151381	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	155807.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	7.44	5.07	0.0	4.05	3.27	1.61	5.28	9.29	1.25
Merged-chr12-16904104-1	chr12	16903604	16904604	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	ORR1D2|LTR|ERVL-MaLR	9126.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	9.72	14.28	3.7	11.47	4.2	16.08	6.34	3.54	2.5
Merged-chr7-120977224-1	chr7	120976724	120977724	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001354986, intron 1 of 4)	intron (NM_001354986, intron 1 of 4)	5088.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	8.01	2.76	1.85	7.42	8.4	4.02	9.51	2.21	3.12
Merged-chr4-88035119-1	chr4	88034619	88035619	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1712.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	8.58	5.07	7.4	4.05	5.13	5.63	7.39	7.07	9.99
Merged-chr6-54644572-1	chr6	54644072	54645072	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164361, exon 14 of 14)	3' UTR (NM_001164361, exon 14 of 14)	-37052.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	10.87	6.45	0.0	5.4	1.87	0.0	2.11	0.88	8.12
Merged-chr8-36130301-1	chr8	36129801	36130801	+	821.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172911, intron 4 of 5)	intron (NM_172911, intron 4 of 5)	-25709.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	9.15	12.9	5.55	12.82	11.2	14.47	6.34	8.84	1.25
Merged-chr2-9926286-3	chr2	9925789	9926789	+	820.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20140.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	30.89	28.11	45.32	48.58	42.92	27.33	54.92	26.53	21.23
Merged-chr8-123034318-3	chr8	123033814	123034814	+	820.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	7970.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	71.51	74.19	34.22	62.07	61.58	61.89	59.15	95.95	49.96
Merged-chr16-17803160-5	chr16	17802639	17803639	+	820.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153790, exon 4 of 11)	exon (NM_153790, exon 4 of 11)	5857.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	17.16	7.37	3.7	16.87	8.86	6.43	19.01	10.61	1.25
Merged-chr7-98086224-2	chr7	98085733	98086733	+	820.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 15 of 48)	intron (NM_008663, intron 15 of 48)	23015.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	24.6	27.19	37.0	21.59	14.0	25.72	39.08	36.7	19.98
Merged-chr2-35696586-3	chr2	35696104	35697104	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290639)	promoter-TSS (NM_001290639)	-128.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	16.59	18.89	11.1	17.54	24.72	26.53	9.51	10.61	6.25
Merged-chr18-75019597-3	chr18	75019066	75020066	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 1 of 16)	intron (NM_027727, intron 1 of 16)	794.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	25.17	17.97	24.05	24.96	24.72	45.01	36.97	23.88	16.86
Merged-chr9-3015314-3	chr9	3014821	3015821	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	23422.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	19.45	90.77	24.97	20.24	114.76	24.92	31.69	55.27	19.36
Merged-chrX-8206506-3	chrX	8206021	8207021	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023638)	promoter-TSS (NM_023638)	4.0	NM_145907	53627.0	Mm.443425	NM_016913	ENSMUSG00000031169	Porcn	2410004O13Rik|AW045557|DXHXS7465e|Mg61|Mporc|Ppn|mMg61|porc	porcupine O-acyltransferase	protein-coding	6.86	6.45	3.7	4.72	6.53	14.47	2.11	3.98	8.74
Merged-chr7-49923599-3	chr7	49923096	49924096	+	820.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146013, intron 5 of 15)	intron (NM_001146013, intron 5 of 15)	11896.0	NM_148931	104245.0	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	1.72	2.76	3.7	3.37	4.2	3.22	3.17	1.77	2.5
Merged-chrX-57299146-3	chrX	57298665	57299665	+	820.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358573, intron 4 of 20)	intron (NM_001358573, intron 4 of 20)	27436.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	22.88	20.74	11.1	13.49	7.46	3.22	11.62	8.4	6.25
Merged-chr13-112343774-3	chr13	112343276	112344276	+	820.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 6 of 11)	intron (NM_001168403, intron 6 of 11)	55258.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	26.31	24.42	25.9	41.83	20.06	14.47	43.3	41.12	29.35
Merged-chr15-99698812-2	chr15	99698325	99699325	+	820.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289791, exon 9 of 10)	exon (NM_001289791, exon 9 of 10)	-3462.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	2.86	4.15	3.7	4.05	2.33	4.82	5.28	1.77	0.0
Merged-chr18-77708584-2	chr18	77708084	77709084	+	820.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	5426.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	16.59	17.51	24.97	22.27	14.46	24.92	9.51	23.88	24.98
Merged-chrX-7769816-2	chrX	7769287	7770287	+	820.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172472, intron 6 of 9)	intron (NM_172472, intron 6 of 9)	5746.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	16.59	13.36	26.82	26.31	17.73	37.78	20.07	19.01	17.49
Merged-chr7-64349833-1	chr7	64349333	64350333	+	820.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177893, intron 11 of 13)	intron (NM_177893, intron 11 of 13)	24262.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	15.45	11.98	14.8	13.49	17.73	28.13	17.96	16.36	13.74
Merged-chr5-99235140-3	chr5	99234626	99235626	+	820.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17801.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	84.09	62.21	55.5	66.8	55.51	86.01	72.88	66.33	53.71
Merged-chr7-27804831-3	chr7	27804322	27805322	+	820.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2374.0	NM_027703	71163.0	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	21.74	29.49	46.25	41.83	33.59	66.71	41.19	27.86	41.84
Merged-chr16-55853078-3	chr16	55852572	55853572	+	820.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-14431.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	3.43	6.45	1.85	5.4	3.73	5.63	2.11	3.54	2.5
Merged-chr1-164136157-3	chr1	164135644	164136644	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011347, intron 8 of 15)	intron (NM_011347, intron 8 of 15)	-15691.0	NM_007976	14067.0	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	5.72	3.23	1.85	11.47	12.6	8.04	11.62	6.63	4.37
Merged-chr11-8660081-3	chr11	8659585	8660585	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	4450.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	36.04	39.17	40.7	66.8	55.05	50.64	30.63	16.36	16.24
Merged-chr17-23546916-3	chr17	23546440	23547440	+	820.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3859.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	132.14	135.47	109.14	111.33	71.84	104.49	58.09	57.92	49.96
Merged-chr11-115005251-2	chr11	115004765	115005765	+	820.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3385.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	16.59	10.14	19.42	58.7	41.05	65.91	65.48	53.94	36.22
Merged-chr17-36058499-1	chr17	36057999	36058999	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199967)	promoter-TSS (NM_001199967)	-128.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0.0	0.0	3.7	6.07	2.33	4.82	4.22	0.0	0.0
Merged-chr4-116632224-2	chr4	116631749	116632749	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4298.0	NM_016777	50927.0	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	24.03	30.41	19.42	34.41	29.39	45.82	41.19	41.12	26.85
Merged-chr1-181856006-1	chr1	181855506	181856506	+	820.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13605.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	2.29	5.99	3.7	6.75	12.6	12.86	8.45	9.29	6.25
Merged-chr19-5414969-3	chr19	5414470	5415470	+	820.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	8155.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	22.88	26.73	42.55	30.36	28.92	36.97	34.85	27.86	45.59
Merged-chr3-87529780-3	chr3	87529291	87530291	+	820.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359750, intron 4 of 4)	intron (NM_001359750, intron 4 of 4)	4213.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	10.3	11.52	9.25	8.77	6.53	5.63	5.28	1.77	3.75
Merged-chr1-62751263-3	chr1	62750814	62751814	+	820.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 7 of 16)	intron (NM_001077404, intron 7 of 16)	43418.0	NR_040601	74992.0	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	14.87	22.12	16.65	19.57	6.53	11.25	14.79	2.65	2.5
Merged-chr3-97661413-3	chr3	97660926	97661926	+	820.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182997, intron 2 of 7)	MER58A|DNA|hAT-Charlie	3214.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	10.87	11.52	11.1	10.8	11.2	15.27	14.79	11.05	7.49
Merged-chr9-106353962-3	chr9	106353474	106354474	+	820.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14658.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	17.16	11.52	9.25	29.01	27.06	28.94	27.46	13.71	26.23
Merged-chr16-11012178-3	chr16	11011684	11012684	+	820.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	3286.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	21.74	19.81	7.4	16.87	15.39	16.08	14.79	18.13	6.25
Merged-chr19-5741937-3	chr19	5741439	5742439	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1035.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	7.44	3.69	1.85	8.77	3.27	11.25	6.34	5.75	3.75
Merged-chr19-61031922-1	chr19	61031422	61032422	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 3 of 15)	(T)n|Simple_repeat|Simple_repeat	108918.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	22.88	23.96	14.8	11.47	15.86	30.54	2.11	0.44	5.0
Merged-chr1-132296728-3	chr1	132296214	132297214	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1912.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	4.0	2.3	1.85	4.05	2.8	4.82	2.11	0.44	5.0
Merged-chr16-50688324-1	chr16	50687824	50688824	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38808.0	NR_105782	102466634.0		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	6.29	4.15	9.25	6.07	6.06	1.61	8.45	1.77	0.0
Merged-chr1-127084040-3	chr1	127083532	127084532	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120954.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	24.03	23.5	29.6	23.62	26.12	32.96	24.29	30.95	21.23
Merged-chr15-78185111-2	chr15	78184614	78185614	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11006.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	2.29	4.61	3.7	0.0	1.87	0.0	2.11	1.33	0.0
Merged-chr13-76638434-1	chr13	76637934	76638934	+	820.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	MIR|SINE|MIR	253473.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	4.58	4.61	0.0	1.35	5.13	3.22	6.34	0.88	3.75
Merged-chr17-5566216-3	chr17	5565712	5566712	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	73612.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	22.31	17.05	1.85	17.54	20.06	16.88	12.67	12.82	17.49
Merged-chr8-71388473-1	chr8	71387973	71388973	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181418, intron 9 of 12)	MTE2b|LTR|ERVL-MaLR	-6521.0	NM_010150	13864.0	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	12.01	20.27	12.02	9.45	9.33	29.74	11.62	9.29	18.11
Merged-chr7-19936202-3	chr7	19935701	19936701	+	820.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	14542.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	37.76	23.5	25.9	31.71	32.19	37.78	31.69	27.86	15.61
Merged-chr8-124261982-1	chr8	124261482	124262482	+	820.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	30588.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	16.59	5.99	6.47	10.12	4.67	4.82	4.22	1.33	2.5
Merged-chr14-77524471-1	chr14	77523971	77524971	+	820.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-17603.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	3.43	2.3	0.0	2.7	0.93	3.22	10.56	7.52	3.75
Merged-chr13-58618729-2	chr13	58618230	58619230	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7853.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	10.3	2.76	13.87	2.7	0.47	2.41	7.39	0.88	2.5
Merged-chr4-120406538-3	chr4	120406038	120407038	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013883, intron 1 of 16)	intron (NM_013883, intron 1 of 16)	1257.0	NM_013883	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	41.76	52.99	46.25	44.53	40.59	38.58	64.43	53.94	32.48
Merged-chr7-35757220-2	chr7	35756727	35757727	+	820.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2773.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	3.43	5.07	1.85	1.35	3.73	1.61	3.17	3.98	3.75
Merged-chr7-115020208-3	chr7	115019691	115020691	+	820.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	68917.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	33.18	41.01	33.3	33.74	27.52	46.62	41.19	35.82	51.84
Merged-chr14-118674872-3	chr14	118674384	118675384	+	820.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 1 of 29)	intron (NM_001163676, intron 1 of 29)	2047.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	4.0	3.23	3.7	4.72	1.87	0.8	4.22	3.54	11.87
Merged-chr2-129315086-3	chr2	129314595	129315595	+	820.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5123.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	36.04	15.67	5.55	32.39	11.66	5.63	20.07	19.01	8.12
Merged-chr17-29434798-3	chr17	29434294	29435294	+	820.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56251.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	127.0	67.27	60.12	20.24	8.86	12.06	53.87	36.7	14.99
Merged-chr6-108179244-3	chr6	108178730	108179730	+	820.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 1 of 8)	intron (NM_145937, intron 1 of 8)	6353.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	22.88	18.43	14.8	16.19	7.46	5.63	8.45	5.75	1.87
Merged-chr18-47306536-2	chr18	47306027	47307027	+	820.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	intron (NM_001311097, intron 1 of 17)	62341.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	6.29	3.69	4.62	13.49	4.67	5.63	5.28	1.33	2.5
Merged-chrX-19237884-2	chrX	19237392	19238392	+	820.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90921.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	5.72	2.3	1.85	2.02	0.0	3.22	0.0	1.77	2.5
Merged-chr19-32379684-3	chr19	32379189	32380189	+	820.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	ORR1F|LTR|ERVL-MaLR	8360.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	10.87	9.68	9.25	13.49	12.13	18.49	4.22	0.88	3.75
Merged-chr10-57761512-3	chr10	57761006	57762006	+	820.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23417.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	93.24	113.81	56.42	129.55	122.69	98.87	73.93	114.96	43.72
Merged-chr7-3675071-3	chr7	3674527	3675527	+	820.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181820, exon 4 of 15)	exon (NM_181820, exon 4 of 15)	2526.0	NM_181820	353499.0	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	5.72	4.61	0.0	2.7	3.73	0.0	2.11	1.77	2.5
Merged-chr9-114730293-3	chr9	114729801	114730801	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	-902.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	25.74	42.39	22.2	31.71	39.65	23.31	44.36	47.75	31.85
Merged-chr10-128299958-3	chr10	128299459	128300459	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NM_031252	83430.0	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	23.45	22.12	17.57	33.06	21.46	20.09	34.85	31.39	19.98
Merged-chr12-70913594-3	chr12	70913082	70914082	+	820.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24275.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	8.01	6.45	1.85	5.4	4.2	0.0	4.22	1.77	7.49
Merged-chr2-35214916-3	chr2	35214395	35215395	+	820.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13775.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	15.45	7.37	3.7	8.77	3.27	1.61	3.17	3.98	0.0
Merged-chr19-4204159-3	chr19	4203653	4204653	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2550.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	32.04	35.02	51.8	35.76	31.72	33.76	28.52	27.86	29.98
Merged-chr5-92363351-2	chr5	92362851	92363851	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038116)	promoter-TSS (NR_038116)	-55.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	5.72	4.61	3.7	4.05	3.73	0.0	7.39	2.65	1.25
Merged-chr12-111556187-2	chr12	111555679	111556679	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	15233.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	9.15	4.61	6.47	5.4	1.4	0.0	6.34	6.63	6.25
Merged-chr11-85710369-3	chr11	85709865	85710865	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	9379.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	16.59	17.97	12.95	27.66	29.39	14.47	21.12	13.27	6.25
Merged-chr16-76407070-1	chr16	76406570	76407570	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33243.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	47.48	47.46	15.72	41.16	41.52	35.37	74.99	60.13	31.85
Merged-chr8-82773709-2	chr8	82773195	82774195	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145600, intron 1 of 9)	intron (NM_145600, intron 1 of 9)	431.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	215.09	240.99	123.94	190.95	225.79	155.13	190.11	167.58	95.55
Merged-chr16-30944272-3	chr16	30943764	30944764	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137168.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	59.49	58.06	36.07	78.27	33.59	32.96	40.14	46.87	40.59
Merged-chr4-62850566-2	chr4	62850050	62851050	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115024.0	NM_028326	72701.0	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	11.44	14.28	6.47	12.14	5.6	6.43	7.39	7.52	1.25
Merged-chr6-54867545-2	chr6	54867036	54868036	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50620.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	10.3	17.05	17.57	31.71	22.86	16.08	12.67	10.61	6.25
Merged-chr1-170936495-1	chr1	170935995	170936995	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8912.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	26.89	26.73	24.05	31.04	23.33	21.7	32.74	18.13	15.61
Merged-chr10-93336219-2	chr10	93335726	93336726	+	820.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038014)	promoter-TSS (NR_038014)	15.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	17.16	15.67	7.4	18.22	20.06	21.7	3.17	2.65	0.0
Merged-chr10-119052659-1	chr10	119052159	119053159	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR81A|LTR|Gypsy	-2160.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	46.91	35.94	31.45	53.3	30.32	28.94	22.18	19.9	23.11
Merged-chr1-64081484-1	chr1	64080984	64081984	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-38983.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	23.45	21.66	11.1	20.92	18.66	24.92	14.79	13.71	20.61
Merged-chr16-90385861-1	chr16	90385361	90386361	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	-536.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	20.02	1.84	5.55	18.89	5.6	9.65	12.67	2.65	3.75
Merged-chr8-120697278-1	chr8	120696778	120697778	+	820.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28958.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	13.73	19.35	12.95	23.62	10.26	35.37	16.9	14.15	3.75
Merged-chr17-24687475-3	chr17	24686974	24687974	+	820.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011522, intron 2 of 3)	CpG	2475.0	NM_011522	20974.0	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	7.44	4.61	1.85	11.47	4.67	6.43	3.17	7.07	5.62
Merged-chr11-46479500-3	chr11	46478997	46479997	+	820.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_134250, exon 7 of 7)	3' UTR (NM_134250, exon 7 of 7)	24566.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	28.03	20.27	14.8	35.09	38.25	45.82	16.9	21.22	14.99
Merged-chr14-77037791-4	chr14	77037224	77038224	+	820.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	952.0	NM_001310649	108811.0	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	86.95	105.06	53.65	82.32	69.98	57.87	210.18	284.76	140.52
Merged-chr6-117917716-2	chr6	117917222	117918222	+	820.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166431, intron 2 of 2)	intron (NM_001166431, intron 2 of 2)	428.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	234.54	276.47	178.52	213.21	260.31	233.1	185.89	212.24	140.52
Merged-chr1-107506375-1	chr1	107505875	107506875	+	820.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5048.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	4.58	8.75	3.7	6.75	3.27	3.22	5.28	4.86	8.12
Merged-chr1-106901653-3	chr1	106901168	106902168	+	820.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32781.0	NM_027971	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	1.14	1.38	7.4	1.35	3.73	4.02	0.0	1.33	6.25
Merged-chr18-79327762-3	chr18	79327199	79328199	+	820.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-218308.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.29	8.29	5.55	14.17	4.67	8.04	5.28	1.33	7.49
Merged-chr7-45536231-3	chr7	45535734	45536734	+	820.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148927, intron 6 of 19)	RMER16_Mm|LTR|ERVK	9904.0	NM_148927	69217.0	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	19.45	11.98	11.1	18.22	11.2	13.66	23.24	20.34	15.61
Merged-chr1-151926282-2	chr1	151925790	151926790	+	820.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	164030.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	8.01	5.99	0.0	12.14	7.93	4.82	6.34	5.75	4.37
Merged-chrX-136277804-3	chrX	136277315	136278315	+	820.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7562.0	NM_001110234	12070.0	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	8.01	5.99	0.0	6.07	7.0	4.82	3.17	4.86	0.0
Merged-chr11-16986856-5	chr11	16986363	16987363	+	820.342834	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 6 of 9)	intron (NM_019549, intron 6 of 9)	21855.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	44.62	58.98	45.32	45.88	32.19	53.85	38.02	45.1	27.48
Merged-chr4-11088779-2	chr4	11088257	11089257	+	820.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12552.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	5.15	11.52	1.85	12.14	10.26	4.82	2.11	3.54	5.0
Merged-chr10-127514371-2	chr10	127513879	127514879	+	820.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-560.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	10.3	3.69	5.55	6.75	2.33	1.61	2.11	2.21	10.62
Merged-chr17-47715265-2	chr17	47714758	47715758	+	820.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11584.0	NM_025973	109820.0	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	6.29	2.76	4.62	6.75	1.4	2.41	7.39	3.54	7.49
Merged-chrX-36082489-1	chrX	36081989	36082989	+	820.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29619.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	74.94	56.68	37.92	55.33	45.72	64.3	41.19	46.43	26.23
Merged-chr15-58682215-1	chr15	58681715	58682715	+	820.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141212.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	7.44	5.53	0.0	8.1	3.27	3.22	5.28	3.1	8.12
Merged-chr4-3647745-3	chr4	3647229	3648229	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8777.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	201.36	205.97	114.69	238.18	167.01	146.29	251.37	259.55	136.77
Merged-chr14-103720835-3	chr14	103720350	103721350	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21418.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	4.0	5.07	3.7	10.12	3.27	0.0	3.17	2.21	3.75
Merged-chr17-12781389-3	chr17	12780890	12781890	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-11684.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	6.86	3.23	3.7	6.75	2.8	6.43	13.73	6.63	7.49
Merged-chr1-151096128-3	chr1	151095573	151096573	+	820.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41961.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	17.16	24.88	12.02	28.34	23.79	9.65	20.07	15.48	9.99
Merged-chr9-22054520-3	chr9	22054018	22055018	+	820.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310759)	TTS (NM_001310759)	-2495.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	9.15	10.14	0.0	18.89	6.53	4.82	10.56	4.42	7.49
Merged-chr2-174086498-3	chr2	174085997	174086997	+	820.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102424, intron 2 of 8)	intron (NM_001102424, intron 2 of 8)	9446.0	NM_001102423	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	13.16	17.51	16.65	25.64	16.33	13.66	26.4	19.9	20.61
Merged-chr2-44979582-4	chr2	44979121	44980121	+	820.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43556.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.58	6.45	7.4	10.12	1.87	1.61	1.06	4.86	6.87
Merged-chr13-52277408-3	chr13	52276904	52277904	+	820.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	180663.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.29	2.3	3.7	4.72	2.33	9.65	6.34	3.54	2.5
Merged-chr17-86969829-3	chr17	86969346	86970346	+	820.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	6735.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	15.45	12.44	20.35	10.8	13.06	12.06	23.24	19.01	16.24
Merged-chr4-32768225-3	chr4	32767709	32768709	+	820.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081392, intron 96 of 101)	(TG)n|Simple_repeat|Simple_repeat	-32050.0	NM_175364	108755.0	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	8.01	4.15	6.47	3.37	5.13	4.02	5.28	7.52	3.75
Merged-chr11-100396781-4	chr11	100396376	100397376	+	820.270813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	914.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	102.97	106.9	77.7	83.66	81.64	95.65	115.12	117.62	74.32
Merged-chr5-114567886-3	chr5	114567395	114568395	+	820.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001004180)	promoter-TSS (NM_001004180)	-356.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	11.44	11.06	0.0	16.87	11.2	8.04	11.62	7.07	6.87
Merged-chr15-27987898-1	chr15	27987398	27988398	+	820.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	37950.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	9.72	7.83	3.7	16.19	9.33	3.22	7.39	2.21	2.5
Merged-chr1-89235540-2	chr1	89235049	89236049	+	820.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165134.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	6.29	6.45	10.17	6.75	1.87	3.22	0.0	0.44	0.0
Merged-chr2-148440066-3	chr2	148439577	148440577	+	820.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010740, exon 2 of 2)	3' UTR (NM_010740, exon 2 of 2)	3458.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.15	10.6	4.62	8.77	7.0	8.04	3.17	6.19	3.75
Merged-chr9-83957068-3	chr9	83956584	83957584	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199195, intron 3 of 10)	intron (NM_199195, intron 3 of 10)	8303.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	2.29	0.0	0.0	3.37	0.47	6.43	3.17	0.44	0.62
Merged-chr11-103359265-3	chr11	103358781	103359781	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183288)	TTS (NM_183288)	4411.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	91.53	89.39	91.57	107.28	69.51	74.75	80.27	120.27	56.21
Merged-chr11-4639017-3	chr11	4638535	4639535	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 1 of 19)	intron (NM_029291, intron 1 of 19)	1242.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	36.04	35.48	20.35	25.64	16.79	8.04	31.69	28.74	11.87
Merged-chr10-62132815-3	chr10	62132317	62133317	+	820.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009719)	promoter-TSS (NM_009719)	-273.0	NM_009719	11925.0	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	5.72	3.23	3.7	6.75	1.87	4.02	1.06	2.65	0.0
Merged-chr17-83215776-4	chr17	83215309	83216309	+	820.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_134117, exon 1 of 7)	exon (NM_134117, exon 1 of 7)	526.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	24.6	29.03	50.87	25.64	18.66	27.33	40.14	24.32	33.1
Merged-chr19-37546964-3	chr19	37546460	37547460	+	820.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3458.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	69.79	82.94	46.25	70.17	49.45	65.91	59.15	64.56	42.47
Merged-chr12-32767058-3	chr12	32766550	32767550	+	820.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53285.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	24.03	15.67	23.12	19.57	12.6	14.47	12.67	7.52	8.12
Merged-chr1-16618763-3	chr1	16618289	16619289	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271016, intron 1 of 6)	CpG	549.0	NM_025773	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	275.16	329.92	275.64	250.32	260.31	263.64	292.56	245.84	176.12
Merged-chr12-16920745-1	chr12	16920245	16921245	+	820.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	L2a|LINE|L2	25767.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	18.31	17.51	3.7	24.29	10.26	16.08	13.73	11.05	7.49
Merged-chr10-127561407-3	chr10	127560969	127561969	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 42 of 88)	intron (NM_008512, intron 42 of 88)	-26910.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	7.44	5.07	16.65	6.07	7.0	11.25	8.45	7.52	4.37
Merged-chr6-97511874-3	chr6	97511384	97512384	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-24064.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	42.33	41.47	22.2	23.62	13.53	47.42	57.03	41.12	39.35
Merged-chr4-6222206-3	chr4	6221721	6222721	+	820.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31116.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	3.43	3.69	1.85	6.07	1.4	6.43	134.14	158.74	93.68
Merged-chr17-70996149-1	chr17	70995649	70996649	+	820.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357820, exon 3 of 4)	exon (NM_001357820, exon 3 of 4)	1863.0	NM_001357820	67268.0	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	34.32	29.95	21.27	38.46	16.33	25.72	8.45	8.84	6.25
Merged-chr9-70392699-2	chr9	70392203	70393203	+	820.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	13050.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	58.92	62.67	19.42	80.97	42.92	69.13	4.22	1.33	0.0
Merged-chr18-46536812-3	chr18	46536320	46537320	+	820.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-10849.0	NM_173423	240263.0	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	26.31	15.67	8.32	27.66	35.92	20.09	26.4	38.03	26.23
Merged-chr16-91352259-3	chr16	91351747	91352747	+	820.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20536.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	32.61	20.27	18.5	31.04	27.06	24.92	11.62	11.94	11.24
Merged-chr18-64510251-3	chr18	64509754	64510754	+	820.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142950, intron 6 of 14)	intron (NM_001142950, intron 6 of 14)	6303.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	52.63	52.99	25.9	47.9	42.45	34.56	30.63	46.43	24.98
Merged-chr8-123287550-3	chr8	123287056	123288056	+	820.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016925, intron 26 of 42)	intron (NM_016925, intron 26 of 42)	31020.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	40.62	42.39	51.8	43.18	22.86	38.58	36.97	24.32	26.85
Merged-chr10-96173110-3	chr10	96172599	96173599	+	820.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53108.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	13.73	34.1	25.9	41.83	26.59	45.01	33.8	39.35	44.97
Merged-chr5-99582208-3	chr5	99581705	99582705	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	146855.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	16.59	14.75	11.1	18.89	19.13	28.94	11.62	6.19	2.5
Merged-chr14-101662106-3	chr14	101661599	101662599	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016723, intron 2 of 8)	CT-rich|Low_complexity|Low_complexity	8132.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	5.15	5.99	22.2	11.47	11.2	8.84	9.51	10.61	11.87
Merged-chr13-60602647-3	chr13	60602134	60603134	+	820.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	CpG-3949	423.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	110.41	158.97	132.27	176.1	186.14	259.62	126.74	140.17	84.94
Merged-chr6-114395507-2	chr6	114395000	114396000	+	820.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2436.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	14.3	14.75	0.0	10.8	12.6	24.11	5.28	3.98	3.12
Merged-chr17-5887021-2	chr17	5886517	5887517	+	820.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025664, exon 2 of 18)	exon (NM_025664, exon 2 of 18)	45637.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	33.18	32.25	31.45	43.18	25.66	28.94	20.07	23.43	18.74
Merged-chr2-166522682-3	chr2	166522112	166523112	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X1_LINE|LINE|CR1	-41910.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	18.88	12.9	1.85	43.18	23.33	28.94	28.52	24.32	12.49
Merged-chr13-112752401-3	chr13	112751924	112752924	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48353.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	34.32	34.1	40.7	56.0	34.52	40.99	79.21	79.59	49.34
Merged-chr5-65086703-3	chr5	65086193	65087193	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20875.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	15.45	15.67	12.02	14.17	10.26	8.04	10.56	8.84	13.74
Merged-chr2-32537774-3	chr2	32537264	32538264	+	820.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	MIRb|SINE|MIR	2405.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	51.48	44.7	27.75	38.46	29.39	49.83	44.36	55.27	34.35
Merged-chr7-30353583-3	chr7	30353075	30354075	+	820.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9197.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	3.43	2.3	3.7	6.07	0.93	0.0	3.17	3.1	0.0
Merged-chr16-76304865-2	chr16	76304374	76305374	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	68175.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	20.02	11.06	1.85	15.52	12.6	14.47	17.96	10.17	10.62
Merged-chr12-28732379-1	chr12	28731879	28732879	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	intron (NM_001161410, intron 3 of 11)	18015.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	56.06	64.51	48.1	58.03	44.32	59.48	58.09	71.63	34.97
Merged-chr1-70858802-1	chr1	70858302	70859302	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177164, intron 3 of 3)	RMER15|LTR|ERVL	133087.0	NM_177164	320460.0	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	15.45	17.51	44.4	12.82	20.99	28.94	20.07	9.73	9.37
Merged-chr2-75703049-2	chr2	75702524	75703524	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	1639.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	245.41	360.79	158.17	290.8	293.9	201.75	297.84	447.47	201.72
Merged-chr6-142710982-1	chr6	142710482	142711482	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8708.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	14.87	19.81	19.42	16.87	14.46	16.88	17.96	13.71	13.74
Merged-chr12-17591433-1	chr12	17590933	17591933	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	46560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	3.43	0.46	5.55	0.67	3.73	0.0	7.39	5.75	11.24
Merged-chr3-121852211-1	chr3	121851711	121852711	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36909.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	4.58	6.45	6.47	2.02	3.27	4.82	9.51	3.54	3.75
Merged-chr13-109441105-1	chr13	109440605	109441605	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	116361.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	12.01	11.98	6.47	17.54	19.13	32.96	5.28	6.19	5.0
Merged-chr9-86513523-1	chr9	86513023	86514023	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177208, intron 16 of 38)	intron (NM_177208, intron 16 of 38)	46369.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	2.86	5.07	7.4	9.45	6.06	6.43	8.45	2.21	8.12
Merged-chr3-127331738-1	chr3	127331238	127332238	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	MTC|LTR|ERVL-MaLR	77320.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.14	1.84	5.55	5.4	0.47	1.61	11.62	9.29	12.49
Merged-chr15-88201700-1	chr15	88201200	88202200	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	-113174.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	2.29	2.76	1.85	7.42	1.87	4.02	0.0	4.42	2.5
Merged-chr2-152653314-1	chr2	152652814	152653814	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16147.0	NM_010376	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	2.29	1.38	0.0	5.4	0.93	1.61	1.06	4.42	6.25
Merged-chr13-88810305-2	chr13	88809788	88810788	+	820.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11184.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	5.72	0.46	3.7	3.37	4.2	4.82	5.28	3.54	5.0
Merged-chr14-46176007-1	chr14	46175507	46176507	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91980.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	3.43	3.23	0.0	5.4	3.73	1.61	2.11	0.44	2.5
Merged-chr15-5870075-1	chr15	5869575	5870575	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	174629.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	21.17	10.6	25.9	12.82	16.33	45.82	17.96	21.67	12.49
Merged-chr11-22436423-2	chr11	22435929	22436929	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-75854.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.29	3.69	0.0	41.83	36.39	10.45	7.39	4.86	2.5
Merged-chr16-50736381-1	chr16	50735881	50736881	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3608.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	141.3	163.12	124.87	150.46	131.56	122.98	156.32	174.66	113.04
Merged-chr3-79179797-1	chr3	79179297	79180297	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CACAA)n|Simple_repeat|Simple_repeat	-33122.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	25.74	20.27	25.9	52.63	30.32	49.83	160.54	141.05	71.2
Merged-chr8-41002112-1	chr8	41001612	41002612	+	820.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 8 of 13)	B1F1|SINE|Alu	-15356.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	22.31	29.03	22.2	22.27	20.06	26.53	81.33	87.11	44.34
Merged-chr14-76072772-2	chr14	76072264	76073264	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38051.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	17.16	18.89	12.95	20.92	21.46	27.33	50.7	60.58	33.72
Merged-chr9-75283062-2	chr9	75282558	75283558	+	820.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081322, intron 25 of 40)	intron (NM_001081322, intron 25 of 40)	-23230.0	NM_010313	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	3.43	1.84	0.92	3.37	2.8	0.0	3.17	3.54	5.0
Merged-chr5-115272262-1	chr5	115271762	115272762	+	820.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016698, exon 1 of 17)	exon (NM_016698, exon 1 of 17)	633.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	141.87	141.0	123.02	105.93	117.56	103.69	118.29	104.79	104.92
Merged-chr2-72373817-3	chr2	72373293	72374293	+	819.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	88092.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	33.18	30.41	18.5	6.07	7.93	6.43	73.93	62.79	22.48
Merged-chr12-54835192-2	chr12	54834683	54835683	+	819.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27694.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	9.72	9.22	0.0	8.77	5.13	6.43	17.96	10.61	0.0
Merged-chr17-27790174-3	chr17	27789655	27790655	+	819.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033279, intron 2 of 4)	intron (NM_001033279, intron 2 of 4)	30387.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	59.49	38.71	38.85	32.39	24.72	41.8	53.87	47.75	36.22
Merged-chr12-100841375-2	chr12	100840878	100841878	+	819.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001361020, exon 6 of 14)	exon (NM_001361020, exon 6 of 14)	58146.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	8.01	12.9	3.7	4.72	5.13	9.65	9.51	3.1	6.25
Merged-chr10-87552883-3	chr10	87552375	87553375	+	819.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008777, intron 3 of 12)	intron (NM_008777, intron 3 of 12)	31080.0	NM_008777	18478.0	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	2.29	3.69	0.92	5.4	2.8	1.61	2.11	4.86	1.87
Merged-chr2-153586738-3	chr2	153586241	153587241	+	819.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46040.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	9.15	1.84	5.55	2.02	1.4	3.22	4.22	2.21	0.0
Merged-chr6-37842968-3	chr6	37842479	37843479	+	819.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27832.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	10.3	10.14	8.32	8.77	9.8	6.43	5.28	7.52	9.99
Merged-chrX-98890998-3	chrX	98890498	98891498	+	819.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313754)	promoter-TSS (NM_001313754)	27.0	NM_052976	94190.0	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	11.44	9.22	4.62	21.59	17.73	19.29	19.01	12.38	17.49
Merged-chr4-43524360-2	chr4	43523843	43524843	+	819.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	-789.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	14.3	4.61	1.85	9.45	5.13	8.84	5.28	5.75	5.0
Merged-chr19-58354193-2	chr19	58353694	58354694	+	819.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285457, intron 4 of 9)	intron (NM_001285457, intron 4 of 9)	57990.0	NR_040449	791347.0	Mm.452208	NR_040449		Gm10007	-	predicted gene 10007	ncRNA	3.43	4.61	5.55	6.75	1.4	5.63	4.22	0.44	8.12
Merged-chr15-62079565-3	chr15	62079057	62080057	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	40300.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	9.15	14.75	21.27	18.89	9.8	18.49	8.45	6.63	12.49
Merged-chr19-16874703-1	chr19	16874203	16875203	+	819.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008023)	promoter-TSS (NM_008023)	-873.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	1.72	1.84	12.95	3.37	3.27	0.0	0.0	0.88	3.12
Merged-chr11-118227846-3	chr11	118227350	118228350	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-15108.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	37.76	33.64	37.0	81.64	62.51	71.54	48.58	41.12	23.73
Merged-chrX-140513620-3	chrX	140513118	140514118	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29050.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	20.59	9.68	29.6	16.19	14.46	24.92	8.45	9.73	8.74
Merged-chr1-72229170-1	chr1	72228670	72229670	+	819.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14823.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	6.86	2.76	0.0	3.37	1.4	11.25	2.11	1.77	8.74
Merged-chr17-47672614-2	chr17	47672117	47673117	+	819.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198421, exon 3 of 7)	exon (NM_198421, exon 3 of 7)	-14993.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	3.43	4.15	0.0	6.07	4.67	4.82	0.0	1.77	7.49
Merged-chr2-16356239-3	chr2	16355895	16356895	+	819.796326	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026162)	promoter-TSS (NM_026162)	91.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	12.59	8.75	1.85	15.52	17.26	25.72	6.34	3.1	5.62
Merged-chr1-65177198-3	chr1	65176704	65177704	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	intron (NM_001111320, intron 1 of 8)	1938.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	80.09	120.73	53.65	158.56	211.79	135.04	161.6	226.83	78.69
Merged-chr6-73210618-3	chr6	73210123	73211123	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164669, intron 2 of 76)	ORR1D1|LTR|ERVL-MaLR	11008.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	12.59	5.07	9.25	6.07	3.73	1.61	12.67	7.07	13.12
Merged-chr6-83356743-3	chr6	83356253	83357253	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175277, intron 3 of 3)	intron (NM_175277, intron 3 of 3)	7269.0	NM_175277	78653.0	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	6.86	3.69	11.1	8.77	2.33	16.08	2.11	0.88	3.75
Merged-chr11-82571620-3	chr11	82571124	82572124	+	819.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61729.0	NR_033582	791422.0	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	-	predicted gene 11426	ncRNA	113.27	76.95	95.27	73.54	43.85	68.32	110.9	86.22	55.58
Merged-chr11-75459392-3	chr11	75458977	75459977	+	819.771423	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2062.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	380.42	398.58	330.21	377.17	367.61	371.35	366.5	523.08	254.81
Merged-chr3-101812730-2	chr3	101812216	101813216	+	819.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172295)	TTS (NM_172295)	23507.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	2.86	0.92	6.47	1.35	0.93	1.61	1.06	0.0	6.25
Merged-chr1-171276534-2	chr1	171276022	171277022	+	819.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008911)	TTS (NM_008911)	4664.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	21.74	15.67	1.85	16.19	7.46	9.65	3.17	1.77	5.0
Merged-chr2-73007583-2	chr2	73007092	73008092	+	819.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-27146.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.15	4.15	6.47	10.8	5.13	6.43	9.51	13.71	5.62
Merged-chr18-75459531-1	chr18	75459031	75460031	+	819.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-55114.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	11.44	5.99	3.7	7.42	5.6	8.04	10.56	3.98	0.0
Merged-chr18-35495586-3	chr18	35495093	35496093	+	819.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	3332.0	NM_030749	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	46.34	43.31	45.32	38.46	34.06	25.72	42.25	44.66	25.61
Merged-chr9-89202381-3	chr9	89201851	89202851	+	819.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	3078.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	37.18	46.54	27.75	39.81	36.85	32.96	53.87	39.8	18.74
Merged-chr7-48928580-2	chr7	48928089	48929089	+	819.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30484.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.58	2.76	5.55	4.05	0.47	0.0	2.11	0.88	2.5
Merged-chr9-25483352-4	chr9	25482812	25483812	+	819.69165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026189, exon 2 of 8)	exon (NM_026189, exon 2 of 8)	1715.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	28.6	27.65	3.7	23.62	23.79	15.27	27.46	27.86	11.24
Merged-chr1-7111686-1	chr1	7111186	7112186	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	22766.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.86	11.06	15.72	6.75	9.33	4.82	7.39	4.86	16.24
Merged-chr13-42101607-3	chr13	42101096	42102096	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	49575.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	16.59	11.52	11.1	12.14	11.2	8.84	12.67	13.27	9.99
Merged-chr8-57780784-1	chr8	57780284	57781284	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175032, intron 11 of 11)	intron (NM_175032, intron 11 of 11)	-127729.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	9.72	8.29	7.4	8.1	11.2	7.23	8.45	4.86	6.25
Merged-chrX-109208018-3	chrX	109207514	109208514	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	11258.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	3.43	3.23	5.55	5.4	1.4	6.43	2.11	0.0	2.5
Merged-chr4-35220339-1	chr4	35219839	35220839	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081343, intron 1 of 10)	intron (NM_001081343, intron 1 of 10)	5541.0	NM_001081343	73205.0	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585|C9orf72	RIKEN cDNA 3110043O21 gene	protein-coding	45.19	82.94	76.77	46.56	61.11	74.75	99.28	85.34	37.47
Merged-chr11-62217850-1	chr11	62217350	62218350	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 12 of 12)	intron (NM_001029936, intron 12 of 12)	-31134.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	2.29	5.53	10.17	6.07	5.13	6.43	2.11	1.77	8.12
Merged-chr17-33995101-1	chr17	33994601	33995601	+	819.666687	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001347346)	TTS (NM_001347346)	5232.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	19.45	5.07	3.7	2.02	2.33	8.84	6.34	5.31	5.62
Merged-chr10-8842970-1	chr10	8842470	8843470	+	819.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	43100.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	38.33	28.11	40.7	59.38	32.19	38.58	32.74	36.7	14.36
Merged-chr10-21621769-2	chr10	21621258	21622258	+	819.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027968, exon 3 of 3)	non-coding (NR_027968, exon 3 of 3)	28613.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	52.06	53.91	36.07	74.22	70.91	43.4	109.84	91.09	44.34
Merged-chr2-26122751-3	chr2	26122256	26123256	+	819.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026495)	promoter-TSS (NM_026495)	55.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	28.6	10.14	28.67	22.27	6.53	16.88	23.24	11.94	5.0
Merged-chr2-35327475-3	chr2	35326985	35327985	+	819.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	9524.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	93.24	139.16	124.87	116.05	114.76	114.14	140.47	150.34	64.33
Merged-chr3-52767460-3	chr3	52766979	52767979	+	819.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038079, intron 1 of 3)	intron (NR_038079, intron 1 of 3)	27755.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.15	8.75	4.62	20.24	5.13	3.22	17.96	15.92	9.99
Merged-chr6-115284301-2	chr6	115283812	115284812	+	819.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32107.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	5.72	2.3	0.0	10.8	12.13	4.82	7.39	2.21	2.5
Merged-chr5-5213621-2	chr5	5213126	5214126	+	819.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	52442.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.01	5.99	9.25	8.1	3.73	3.22	14.79	4.42	7.49
Merged-chr19-34522250-3	chr19	34521724	34522724	+	819.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	5250.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	209.94	284.3	157.24	217.93	222.99	198.54	243.98	354.62	146.76
Merged-chr4-150608818-3	chr4	150608322	150609322	+	819.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	43352.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	22.88	20.27	25.9	26.31	34.52	21.7	29.57	20.78	17.49
Merged-chr14-118664421-3	chr14	118663876	118664876	+	819.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	MTC|LTR|ERVL-MaLR	12555.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	19.45	25.8	27.75	17.54	7.46	15.27	24.29	19.9	14.99
Merged-chr9-111083772-1	chr9	111083272	111084272	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26254.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.58	3.69	3.7	10.12	3.27	3.22	3.17	3.1	3.75
Merged-chr17-33503671-1	chr17	33503171	33504171	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20414.0	NR_137628	224697.0	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	5.72	1.38	3.7	12.82	5.6	10.45	6.34	2.65	3.75
Merged-chr17-17585307-3	chr17	17584808	17585808	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	39181.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	62.35	88.01	79.55	53.3	42.45	62.7	87.66	93.74	61.2
Merged-chr10-57628765-3	chr10	57628238	57629238	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3243.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	12.01	5.53	10.17	16.19	7.93	12.06	5.28	3.98	16.24
Merged-chr1-45838454-1	chr1	45837954	45838954	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43288.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	11.44	21.2	23.12	21.59	22.86	20.09	11.62	16.8	18.11
Merged-chr14-52446072-2	chr14	52445574	52446574	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4319.0	NM_020514	57271.0	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	12.01	10.14	5.55	18.22	11.2	17.68	2.11	0.88	0.0
Merged-chr9-7270312-1	chr9	7269812	7270812	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2202.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.86	4.15	3.7	8.1	5.13	12.86	3.17	3.1	2.5
Merged-chr7-80640757-1	chr7	80640257	80641257	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040343, intron 4 of 4)	intron (NR_040343, intron 4 of 4)	4740.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	169.33	171.87	138.74	119.43	104.03	122.98	127.8	154.76	108.04
Merged-chr2-26141101-1	chr2	26140601	26141601	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256521)	promoter-TSS (NM_001256521)	-595.0	NM_001256521	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	46.91	42.39	44.4	59.38	48.52	54.66	41.19	52.18	36.22
Merged-chr2-11706857-1	chr2	11706357	11707357	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271499, intron 1 of 6)	intron (NM_001271499, intron 1 of 6)	1145.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	40.04	31.33	35.15	39.13	32.19	19.29	40.14	27.41	16.24
Merged-chr1-193600083-1	chr1	193599583	193600583	+	819.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-92553.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	2.86	2.76	0.0	2.02	4.2	3.22	7.39	0.44	2.5
Merged-chr7-110386488-3	chr7	110386007	110387007	+	819.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	intron (NM_177324, intron 17 of 40)	164804.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	36.61	46.54	32.37	29.01	30.32	45.82	32.74	25.2	51.21
Merged-chr4-145201631-3	chr4	145201130	145202130	+	819.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6625.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	21.17	29.03	12.02	21.59	31.26	40.99	21.12	31.39	18.11
Merged-chr13-104041200-3	chr13	104040698	104041698	+	819.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 9 of 12)	intron (NM_029447, intron 9 of 12)	68416.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	5.72	5.53	3.7	8.77	7.93	6.43	9.51	10.17	2.5
Merged-chr9-15395532-3	chr9	15395016	15396016	+	819.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-37728.0	NM_176976	319675.0	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	7.44	6.45	12.95	12.14	3.27	15.27	3.17	5.31	8.74
Merged-chr2-32488852-2	chr2	32488339	32489339	+	819.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37369.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	4.0	3.23	0.0	6.07	1.4	3.22	8.45	2.65	7.49
Merged-chr3-116206105-2	chr3	116205603	116206603	+	819.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47381.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	56.06	55.29	63.82	80.29	88.17	90.83	82.38	96.39	40.59
Merged-chr17-28012965-3	chr17	28012461	28013461	+	819.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	67623.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	61.21	50.23	42.55	95.14	82.57	77.97	46.47	63.23	19.36
Merged-chr3-148989489-3	chr3	148989002	148990002	+	819.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-34867.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	12.59	8.29	20.35	29.01	10.73	17.68	4.22	3.54	2.5
Merged-chr10-77627702-3	chr10	77627203	77628203	+	819.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	5382.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	11.44	12.44	14.8	10.8	11.2	12.86	12.67	10.17	21.23
Merged-chr2-160086178-2	chr2	160085689	160086689	+	819.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69536.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	122.42	131.78	62.9	134.27	116.16	139.06	67.6	60.58	69.32
Merged-chr8-125587257-1	chr8	125586757	125587757	+	819.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	MTE2b|LTR|ERVL-MaLR	2619.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	11.44	2.3	3.7	3.37	3.73	3.22	4.22	1.77	5.62
Merged-chr16-43578519-3	chr16	43578015	43579015	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-62140.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	4.58	5.07	7.4	9.45	2.33	4.82	6.34	16.36	8.74
Merged-chr6-54973016-3	chr6	54972517	54973517	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172729)	promoter-TSS (NM_172729)	-405.0	NM_172729	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	78.94	149.75	77.7	77.59	114.29	69.13	116.18	121.6	70.57
Merged-chr11-5369344-1	chr11	5368844	5369844	+	819.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	12396.0	NM_001290501	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	1.72	4.15	3.7	10.12	2.8	9.65	3.17	3.1	5.0
Merged-chr3-153260774-3	chr3	153260266	153261266	+	819.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	37883.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	55.49	79.25	73.07	64.77	63.45	62.7	88.72	70.75	68.7
Merged-chr14-45179810-3	chr14	45179303	45180303	+	819.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 7 of 20)	intron (NM_001310534, intron 7 of 20)	39622.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	8.01	8.75	20.35	9.45	7.93	6.43	5.28	4.42	5.62
Merged-chr14-46734957-3	chr14	46734453	46735453	+	819.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25588.0	NM_001360041	72391.0	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	23.45	22.12	24.05	27.66	16.79	28.94	21.12	20.34	19.98
Merged-chr7-80184443-3	chr7	80183964	80184964	+	819.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2377.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	13.16	23.96	46.25	10.8	7.93	12.06	19.01	29.18	26.85
Merged-chr7-16902112-1	chr7	16901612	16902612	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4378.0	NM_008967	19222.0	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	6.86	1.38	3.7	8.77	2.8	7.23	4.22	3.98	4.37
Merged-chr15-99395562-2	chr15	99395001	99396001	+	819.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	B3|SINE|B2	2282.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	94.39	84.32	69.37	138.32	102.17	96.45	101.39	73.84	71.2
Merged-chr6-73808387-1	chr6	73807887	73808887	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-337366.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	2.29	2.3	3.7	5.4	3.27	5.63	1.06	4.42	3.75
Merged-chr15-88146268-1	chr15	88145768	88146768	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168606.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	10.87	15.67	9.25	19.57	23.79	35.37	1.06	1.77	1.25
Merged-chr9-90126849-3	chr9	90126355	90127355	+	819.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12035.0	NM_024431	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	18.88	32.25	12.95	14.17	22.86	20.9	22.18	30.51	26.23
Merged-chr12-77047438-1	chr12	77046938	77047938	+	819.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-85190.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.43	5.07	7.4	3.37	5.6	3.22	3.17	1.77	8.12
Merged-chr15-102742776-3	chr15	102742266	102743266	+	819.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4143.0	NR_104334	102216269.0		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	2.86	1.84	3.7	4.05	3.27	1.61	2.11	1.33	0.0
Merged-chr2-131166036-3	chr2	131165518	131166518	+	819.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-5937.0	NM_026091	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	34.32	36.4	39.77	15.52	11.2	16.08	47.53	41.56	39.97
Merged-chr13-30933192-2	chr13	30932691	30933691	+	819.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025588, intron 4 of 27)	intron (NM_025588, intron 4 of 27)	14570.0	NM_153072	210554.0	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	8.58	8.29	18.5	6.75	8.86	10.45	11.62	19.9	10.62
Merged-chr10-117825057-2	chr10	117824553	117825553	+	819.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	20921.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	51.48	59.9	44.4	63.42	56.91	66.71	73.93	78.26	40.59
Merged-chr7-19506517-3	chr7	19506006	19507006	+	819.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177692, exon 2 of 2)	3' UTR (NM_177692, exon 2 of 2)	1825.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	49.2	46.54	48.1	33.06	20.99	43.4	40.14	43.77	27.48
Merged-chr3-89865176-2	chr3	89864684	89865684	+	819.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33814.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	28.03	22.12	38.85	23.62	21.46	32.15	22.18	16.36	10.62
Merged-chrX-109117047-2	chrX	109116543	109117543	+	819.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	Lx8|LINE|L1	21636.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	17.73	13.36	11.1	14.17	13.53	12.86	9.51	12.82	12.49
Merged-chr8-122948933-3	chr8	122948432	122949432	+	819.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	93352.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	22.88	29.03	10.17	35.76	18.19	19.29	24.29	20.34	27.48
Merged-chr8-3665690-2	chr8	3665192	3666192	+	819.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026985)	promoter-TSS (NM_026985)	-70.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	3.43	3.69	0.0	3.37	2.8	8.04	7.39	3.1	5.0
Merged-chr1-34716026-2	chr1	34715511	34716511	+	819.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79801.0	NR_033627	241051.0	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	5.15	7.37	5.55	76.92	57.38	84.4	102.45	119.39	68.07
Merged-chr10-80824062-3	chr10	80823540	80824540	+	819.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2616.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	119.56	134.55	114.69	78.27	89.1	117.35	119.35	166.25	89.31
Merged-chr19-43711776-3	chr19	43711285	43712285	+	819.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_053103, exon 6 of 13)	exon (NM_053103, exon 6 of 13)	22096.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	33.75	36.86	33.3	48.58	50.38	64.3	86.61	108.33	57.46
Merged-chr10-84443571-3	chr10	84443061	84444061	+	819.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3090.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	14.87	9.68	6.47	15.52	8.4	12.06	5.28	5.31	8.74
Merged-chr1-120038856-3	chr1	120038371	120039371	+	819.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012322, intron 5 of 13)	intron (NM_001012322, intron 5 of 13)	31891.0	NM_001012322	319229.0	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	10.3	10.14	9.25	14.17	20.06	12.06	28.52	17.69	6.87
Merged-chr3-10466089-3	chr3	10465600	10466600	+	819.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25970.0	NM_001127191	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	7.44	5.07	0.0	2.7	2.33	0.8	0.0	1.77	0.62
Merged-chr1-131525282-3	chr1	131524763	131525763	+	819.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081011, exon 2 of 23)	5' UTR (NM_001081011, exon 2 of 23)	2098.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	29.17	24.88	49.02	33.74	20.53	38.58	30.63	12.38	25.61
Merged-chr2-121413117-1	chr2	121412617	121413617	+	819.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007952)	promoter-TSS (NM_007952)	675.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	124.14	122.11	105.44	124.82	111.03	113.33	133.08	128.67	80.56
Merged-chr12-117516410-1	chr12	117515910	117516910	+	819.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175930)	promoter-TSS (NM_175930)	-69.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.15	7.83	9.25	10.12	1.87	8.04	14.79	9.73	5.0
Merged-chr1-191199285-2	chr1	191198792	191199792	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15959.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	20.02	16.59	9.25	25.64	16.79	11.25	17.96	13.71	7.49
Merged-chr3-101846292-1	chr3	101845792	101846792	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10069.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	9.15	13.36	26.82	7.42	13.06	18.49	12.67	12.82	23.11
Merged-chr2-35545166-1	chr2	35544666	35545666	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13292.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	6.29	1.84	5.55	1.35	2.8	3.22	2.11	1.77	3.75
Merged-chr4-136172173-3	chr4	136171663	136172663	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-111.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	30.32	38.71	18.5	33.06	25.19	8.04	38.02	49.96	17.49
Merged-chr17-5890574-1	chr17	5890074	5891074	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025664, intron 3 of 17)	intron (NM_025664, intron 3 of 17)	49194.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	7.44	5.99	4.62	3.37	2.33	4.82	8.45	1.77	1.25
Merged-chr11-79461023-2	chr11	79460559	79461559	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 30 of 57)	intron (NM_010897, intron 30 of 57)	22972.0	NR_045305	104522.0	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	19.45	12.9	11.1	14.17	9.33	22.51	8.45	14.59	7.49
Merged-chr2-150829956-1	chr2	150829456	150830456	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153781, intron 19 of 19)	intron (NM_153781, intron 19 of 19)	12614.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	41.19	35.94	39.77	38.46	31.26	29.74	17.96	24.32	32.48
Merged-chr10-43037485-1	chr10	43036985	43037985	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175407, intron 5 of 6)	intron (NM_175407, intron 5 of 6)	-46323.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	2.29	4.61	1.85	10.12	3.73	2.41	20.07	4.86	7.49
Merged-chr10-121290204-2	chr10	121289708	121290708	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	21188.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.29	1.38	1.85	5.4	0.47	3.22	1.06	0.88	0.0
Merged-chr4-74362957-2	chr4	74362459	74363459	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 16 of 20)	L1MDa|LINE|L1	111080.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	10.3	8.75	2.77	7.42	6.06	10.45	8.45	4.86	9.37
Merged-chr1-59459100-1	chr1	59458600	59459600	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23047.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	4.0	3.69	6.47	14.17	6.06	4.82	6.34	4.42	0.0
Merged-chr7-19800922-1	chr7	19800422	19801422	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4113.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	8.58	2.3	4.62	2.02	3.27	3.22	4.22	1.77	6.25
Merged-chr18-62250696-3	chr18	62250183	62251183	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70583.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	10.3	13.36	4.62	7.42	2.8	6.43	9.51	11.5	11.24
Merged-chr18-69575508-3	chr18	69575001	69576001	+	819.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	229341.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	32.04	37.32	22.2	68.82	49.45	38.58	45.42	38.91	5.0
Merged-chr1-182271934-1	chr1	182271434	182272434	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10261.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	7.44	1.84	2.77	2.02	1.4	0.0	1.06	0.0	2.5
Merged-chr16-4308045-1	chr16	4307545	4308545	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 5 of 10)	intron (NM_009624, intron 5 of 10)	78816.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	16.02	6.45	24.05	6.07	14.46	8.84	11.62	3.1	7.49
Merged-chr19-37059754-1	chr19	37059254	37060254	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198300, intron 8 of 10)	intron (NM_198300, intron 8 of 10)	-114089.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	10.87	6.91	16.65	26.99	20.99	15.27	70.76	74.73	38.72
Merged-chr17-47428991-1	chr17	47428491	47429491	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029296, intron 3 of 3)	intron (NM_029296, intron 3 of 3)	-7111.0	NM_001347584	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	1.14	2.3	4.62	6.75	2.8	3.22	6.34	3.98	5.0
Merged-chr17-45593761-1	chr17	45593261	45594261	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199113)	promoter-TSS (NM_001199113)	-121.0	NM_001199113	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	27.46	29.49	21.27	22.94	26.12	39.39	42.25	36.26	33.72
Merged-chr2-118053763-1	chr2	118053263	118054263	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 4 of 9)	LTR41B|LTR|ERVL	57439.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	6.86	6.45	6.47	4.72	2.33	3.22	3.17	4.86	0.62
Merged-chr16-49907529-1	chr16	49907029	49908029	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010581, intron 9 of 9)	intron (NM_010581, intron 9 of 9)	-48301.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	12.01	19.35	20.35	17.54	15.86	21.7	17.96	22.55	11.24
Merged-chr19-37428842-1	chr19	37428342	37429342	+	819.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-5999.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	10.87	5.07	3.7	6.75	2.8	8.04	5.28	8.4	5.0
Merged-chr3-136078764-3	chr3	136078261	136079261	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 11 of 16)	intron (NM_001033350, intron 11 of 16)	-238492.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	28.6	54.83	37.0	29.01	15.86	45.01	21.12	38.47	33.72
Merged-chr7-118118130-3	chr7	118117632	118118632	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019419)	TTS (NM_019419)	-1985.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	85.81	88.93	70.3	99.18	54.58	86.01	132.02	139.72	73.69
Merged-chr2-152793482-3	chr2	152792990	152793990	+	818.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	34999.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	30.89	12.44	12.95	24.29	14.93	19.29	23.24	19.9	21.86
Merged-chr17-43266000-2	chr17	43265489	43266489	+	818.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-4358.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	5.15	4.15	0.92	4.05	1.87	0.0	2.11	4.42	0.0
Merged-chr17-40882228-2	chr17	40881733	40882733	+	818.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1675.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	10.87	13.82	14.8	0.0	2.8	4.82	12.67	18.13	11.24
Merged-chr7-67524268-2	chr7	67523761	67524761	+	818.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	120975.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	4.58	5.99	10.17	6.07	8.86	6.43	8.45	5.75	5.0
Merged-chr11-110379794-3	chr11	110379301	110380301	+	818.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19301.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	14.3	11.52	9.25	16.87	20.99	13.66	20.07	11.05	12.49
Merged-chr6-87542826-3	chr6	87542334	87543334	+	818.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-9575.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	101.25	114.74	83.25	120.77	78.37	129.41	134.14	145.47	94.93
Merged-chr7-16928485-3	chr7	16928002	16929002	+	818.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4470.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	12.01	12.44	10.17	6.75	8.86	13.66	15.84	18.57	13.74
Merged-chr5-115011765-5	chr5	115011303	115012303	+	818.886658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	CpG	279.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	161.89	167.26	166.49	168.68	165.14	184.87	184.83	122.04	91.18
Merged-chr15-101198379-2	chr15	101197876	101198876	+	818.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 3 of 8)	intron (NM_007395, intron 3 of 8)	4507.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.57	2.76	8.32	10.8	4.67	8.04	2.11	1.33	9.99
Merged-chr16-72980024-2	chr16	72979523	72980523	+	818.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019413, intron 15 of 28)	intron (NM_019413, intron 15 of 28)	316874.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	3.43	0.92	5.55	2.02	0.93	1.61	7.39	1.77	5.62
Merged-chr2-52965229-1	chr2	52964729	52965729	+	818.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	107361.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	25.17	16.13	1.85	18.89	11.2	29.74	20.07	8.84	12.49
Merged-chr4-109418341-3	chr4	109417862	109418862	+	818.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 2 of 17)	intron (NM_001145948, intron 2 of 17)	2715.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	15.45	9.68	3.7	20.92	12.13	14.47	11.62	7.07	12.49
Merged-chr13-47225539-3	chr13	47225014	47226014	+	818.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	31511.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	180.77	188.0	167.42	155.86	200.6	158.35	141.53	176.87	110.54
Merged-chr1-77761598-1	chr1	77761098	77762098	+	818.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-246510.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	1.72	0.46	5.55	6.75	0.47	3.22	4.22	3.98	3.75
Merged-chr1-55363514-3	chr1	55363071	55364071	+	818.79364	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029267)	promoter-TSS (NM_029267)	-102.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	1.72	0.92	1.85	2.7	5.13	4.82	3.17	0.88	5.0
Merged-chr5-115336961-2	chr5	115336451	115337451	+	818.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029645, intron 1 of 2)	intron (NM_029645, intron 1 of 2)	4210.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	20.02	25.34	22.2	14.84	15.86	27.33	20.07	25.2	31.23
Merged-chr13-56647737-1	chr13	56647237	56648237	+	818.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38151.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	5.15	2.76	1.85	5.4	5.13	2.41	8.45	1.33	1.25
Merged-chr19-5018935-3	chr19	5018436	5019436	+	818.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5070.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	22.88	16.13	15.72	21.59	18.19	28.94	29.57	20.34	13.74
Merged-chr6-17281745-3	chr6	17281217	17282217	+	818.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016900, intron 1 of 2)	intron (NM_016900, intron 1 of 2)	532.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	17.73	5.07	12.95	13.49	5.13	20.09	9.51	6.19	4.37
Merged-chr9-64072130-3	chr9	64071632	64072632	+	818.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8629.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	13.16	2.76	1.85	7.42	7.0	4.82	6.34	2.65	3.75
Merged-chr3-28013634-1	chr3	28013134	28014134	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	29463.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	31.46	35.94	38.85	36.43	32.19	28.94	47.53	47.31	31.85
Merged-chr17-10985527-1	chr17	10985027	10986027	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	145168.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	1.14	3.69	9.25	2.02	5.6	1.61	5.28	4.86	3.75
Merged-chr1-36437364-1	chr1	36436864	36437864	+	818.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310517, intron 4 of 8)	intron (NM_001310517, intron 4 of 8)	7907.0	NM_001013374	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	45.19	48.84	27.75	41.83	19.59	55.46	34.85	37.58	36.85
Merged-chr12-69485857-3	chr12	69485357	69486357	+	818.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10307.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	36.61	25.34	23.12	64.1	38.25	36.97	60.2	51.29	21.23
Merged-chr1-181245196-3	chr1	181244697	181245697	+	818.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33219.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	16.59	13.36	15.72	20.24	16.33	22.51	15.84	13.71	19.36
Merged-chr10-88715895-2	chr10	88715395	88716395	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15206.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	41.76	28.11	30.52	49.25	25.66	34.56	36.97	30.07	24.98
Merged-chr16-49906373-2	chr16	49905871	49906871	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	intron (NM_010581, intron 8 of 9)	-49459.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	87.52	113.35	70.3	130.9	94.7	142.27	122.52	134.86	71.2
Merged-chr12-116595932-2	chr12	116595432	116596432	+	818.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	MTD-int|LTR|ERVL-MaLR	110212.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	2.29	1.38	2.77	4.05	0.47	3.22	8.45	4.42	0.0
Merged-chr17-29488707-2	chr17	29488206	29489206	+	818.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2339.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	383.85	316.56	160.02	343.43	334.02	213.0	209.12	259.99	90.56
Merged-chr2-84716212-2	chr2	84715748	84716748	+	818.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1084.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	72.08	91.7	89.72	62.07	77.91	68.32	97.17	133.09	60.58
Merged-chr12-80320102-3	chr12	80319603	80320603	+	818.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59722.0	NM_001346669	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	37.18	40.09	49.95	38.46	40.59	56.27	40.14	41.12	40.59
Merged-chr3-96501012-3	chr3	96500504	96501504	+	818.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24181.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	47.48	80.64	74.92	52.63	46.65	45.01	123.57	137.96	90.56
Merged-chr4-101223297-3	chr4	101222800	101223800	+	818.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	41982.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	16.59	7.37	0.92	16.19	7.0	5.63	10.56	6.63	3.75
Merged-chr10-79853608-3	chr10	79853057	79854057	+	818.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	-875.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	186.49	234.08	204.41	216.58	213.19	246.76	270.38	272.82	161.75
Merged-chr3-87000267-2	chr3	86999770	87000770	+	818.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007639)	promoter-TSS (NM_007639)	-930.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	56.06	85.25	72.15	67.47	54.58	65.11	57.03	76.05	50.59
Merged-chr2-156540766-3	chr2	156540354	156541354	+	818.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-6722.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	45.19	27.19	19.42	31.71	19.13	26.53	48.58	43.33	22.48
Merged-chr4-134703332-4	chr4	134702862	134703862	+	818.508362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207237, exon 1 of 12)	exon (NM_207237, exon 1 of 12)	928.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	117.84	91.7	126.72	155.19	101.7	112.53	122.52	61.9	61.83
Merged-chr11-97413037-1	chr11	97412537	97413537	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37123.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	28.6	23.04	27.75	24.96	24.26	32.96	24.29	17.69	15.61
Merged-chr18-6244738-2	chr18	6244242	6245242	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamGypLTR1b|LTR|Gypsy	-3218.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	8.01	10.6	16.65	8.1	12.6	22.51	9.51	7.96	16.24
Merged-chr4-134677027-2	chr4	134676524	134677524	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	27266.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	20.59	16.13	10.17	12.14	4.67	4.82	7.39	3.1	2.5
Merged-chr6-137702853-2	chr6	137702406	137703406	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32176.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	53.77	53.91	54.57	14.84	5.6	8.04	4.22	4.86	5.62
Merged-chr4-106387027-2	chr4	106386533	106387533	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183225, intron 32 of 67)	L2a|LINE|L2	70820.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	20.02	18.43	15.72	22.94	19.59	22.51	9.51	9.29	9.99
Merged-chr11-80072510-2	chr11	80072011	80073011	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018776, intron 1 of 7)	intron (NM_018776, intron 1 of 7)	8480.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	30.32	33.64	11.1	28.34	22.86	33.76	30.63	34.05	16.24
Merged-chr17-12029617-2	chr17	12029128	12030128	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-89656.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	11.44	10.6	9.25	3.37	1.87	0.0	2.11	2.65	3.75
Merged-chr16-23136746-2	chr16	23136254	23137254	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9024.0	NM_145480	106344.0	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	12.59	9.68	10.17	14.17	14.0	26.53	16.9	14.15	6.25
Merged-chr10-10411236-2	chr10	10410734	10411734	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 12 of 36)	intron (NM_001127353, intron 12 of 36)	61080.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	14.87	17.05	19.42	16.19	16.33	19.29	26.4	18.57	8.74
Merged-chr13-107886891-2	chr13	107886395	107887395	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	3169.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.31	24.42	33.3	26.31	21.46	20.9	39.08	38.91	13.12
Merged-chr11-9602342-2	chr11	9601841	9602841	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 55 of 61)	RMER15|LTR|ERVL	410399.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	1.72	3.23	0.0	2.7	0.93	6.43	1.06	0.88	8.74
Merged-chr2-35308327-1	chr2	35307827	35308827	+	818.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_146120)	TTS (NM_146120)	25947.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	2.86	2.3	5.55	8.1	4.2	6.43	9.51	4.86	5.62
Merged-chr5-96998339-3	chr5	96997849	96998849	+	818.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	660.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	165.32	126.25	127.64	196.34	117.56	145.49	163.71	139.28	109.92
Merged-chr19-57355611-3	chr19	57355105	57356105	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5294.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	16.59	34.56	35.15	34.41	26.12	44.21	33.8	22.11	27.48
Merged-chr7-44401881-3	chr7	44401393	44402393	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	17767.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	7.44	5.53	13.87	4.05	4.2	4.82	10.56	9.29	6.25
Merged-chr2-133480654-3	chr2	133480152	133481152	+	818.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71507.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	21.74	22.58	37.92	25.64	21.93	59.48	24.29	19.9	31.85
Merged-chr2-170158198-3	chr2	170157701	170158701	+	818.404785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15526.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	34.32	25.34	48.1	31.04	26.12	39.39	47.53	46.43	51.84
Merged-chr4-129130317-3	chr4	129129827	129130827	+	818.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6672.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	16.59	6.45	6.47	4.72	2.33	0.0	8.45	4.42	6.25
Merged-chr7-12422502-2	chr7	12421990	12422990	+	818.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033820)	promoter-TSS (NM_001033820)	1.0	NM_001033820	619331.0	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	17.16	11.06	5.55	13.49	8.86	12.86	15.84	9.29	21.23
Merged-chr11-116581036-3	chr11	116580564	116581564	+	818.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173755, exon 1 of 18)	exon (NM_173755, exon 1 of 18)	383.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	18.31	17.05	9.25	30.36	19.59	14.47	20.07	8.84	2.5
Merged-chr16-94328221-4	chr16	94327803	94328803	+	818.354187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133229)	promoter-TSS (NM_133229)	-119.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	61.78	45.62	34.22	72.19	59.25	40.19	55.98	54.83	19.98
Merged-chr9-69109788-2	chr9	69109276	69110276	+	818.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-180065.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	4.58	4.15	7.4	8.1	2.8	3.22	2.11	1.77	2.5
Merged-chr12-16580211-2	chr12	16579709	16580709	+	818.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355598, intron 2 of 20)	MLT1G1|LTR|ERVL-MaLR	9561.0	NM_015763	14245.0	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	Lipin1|fld	lipin 1	protein-coding	18.88	9.22	14.8	15.52	7.93	9.65	7.39	2.21	5.62
Merged-chr12-36381020-3	chr12	36380517	36381517	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289502)	promoter-TSS (NM_001289502)	-433.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	101.25	127.18	74.92	107.28	61.58	42.6	228.14	232.58	44.34
Merged-chr11-85663635-1	chr11	85663135	85664135	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	56109.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	17.73	11.98	1.85	14.84	21.46	4.02	12.67	9.73	11.24
Merged-chr6-97407527-1	chr6	97407027	97408027	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	51759.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	61.78	53.45	42.55	62.75	42.92	45.82	49.64	62.35	33.72
Merged-chr14-8161958-1	chr14	8161458	8162458	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360315, intron 18 of 18)	intron (NM_001360315, intron 18 of 18)	11034.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	2.29	5.53	8.32	6.07	3.27	9.65	0.0	2.65	5.0
Merged-chr12-69681373-3	chr12	69680896	69681896	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135559, intron 1 of 22)	CpG	456.0	NM_001135559	20663.0	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	SOS Ras/Rho guanine nucleotide exchange factor 2	protein-coding	118.99	164.5	184.07	160.58	183.34	147.09	122.52	112.31	129.28
Merged-chr18-67486694-1	chr18	67486194	67487194	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	21845.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	6.86	3.69	0.92	6.75	9.8	6.43	3.17	4.86	8.74
Merged-chr4-129812200-3	chr4	129811694	129812694	+	818.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-8285.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	226.53	201.82	125.79	236.15	144.15	141.47	314.74	308.19	99.92
Merged-chr1-138343630-1	chr1	138343130	138344130	+	818.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	69892.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	5.15	3.23	5.55	9.45	9.8	3.22	6.34	0.44	1.25
Merged-chr5-123471030-3	chr5	123470513	123471513	+	818.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	11088.0	NM_029594	76399.0	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	9.15	7.83	11.1	6.07	7.0	3.22	8.45	1.77	3.12
Merged-chr7-128128964-3	chr7	128128510	128129510	+	818.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021334)	promoter-TSS (NM_021334)	-558.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	68.65	45.16	24.05	68.15	32.66	18.49	51.75	39.35	19.36
Merged-chr11-46448102-4	chr11	46447595	46448595	+	818.258301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-6836.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	22.31	21.2	25.9	12.14	29.86	34.56	27.46	20.34	12.49
Merged-chr7-67374143-3	chr7	67373624	67374624	+	818.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1266.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	94.39	150.68	96.2	127.52	117.56	132.63	120.41	140.61	91.81
Merged-chr19-34217150-2	chr19	34216647	34217647	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360719)	promoter-TSS (NM_001360719)	-361.0	NM_001360719	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.01	7.83	12.95	14.17	5.6	6.43	3.17	3.1	3.75
Merged-chr3-8984762-1	chr3	8984262	8985262	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MER5A|DNA|hAT-Charlie	19442.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	194.5	153.9	94.35	241.55	153.95	140.66	181.66	224.62	109.92
Merged-chr19-12540172-3	chr19	12539663	12540663	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33347.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	21.74	27.65	44.4	17.54	9.8	10.45	121.46	108.77	83.06
Merged-chr16-90334276-1	chr16	90333776	90334776	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49773.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	2.86	2.76	0.0	6.07	1.4	0.0	2.11	0.0	0.62
Merged-chr2-116897031-3	chr2	116896513	116897513	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3139.0	NR_040336	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.58	8.75	9.25	2.02	0.93	0.0	3.17	7.07	5.0
Merged-chr6-83488696-3	chr6	83488192	83489192	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149734, intron 3 of 6)	intron (NR_149734, intron 3 of 6)	18277.0	NM_013764	27369.0	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	30.32	28.57	24.05	27.66	31.72	55.46	36.97	28.74	28.1
Merged-chr13-76410845-2	chr13	76410334	76411334	+	818.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	25873.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	6.86	3.69	1.85	6.75	2.8	3.22	1.06	7.52	3.75
Merged-chr7-45403745-2	chr7	45403256	45404256	+	818.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2204.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	2.86	2.76	0.0	3.37	0.47	2.41	0.0	0.88	1.87
Merged-chr2-12206460-2	chr2	12205898	12206898	+	818.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	RLTR9C|LTR|ERVK	-94848.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.0	3.69	8.32	9.45	4.67	3.22	5.28	7.96	4.37
Merged-chr9-25504919-3	chr9	25504425	25505425	+	818.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	23328.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	46.34	40.55	19.42	62.75	37.79	27.33	61.26	72.07	13.74
Merged-chr4-11579249-3	chr4	11578750	11579750	+	818.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256142)	promoter-TSS (NM_001256142)	-412.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	44.05	74.65	62.9	62.07	56.45	53.05	52.81	69.86	45.59
Merged-chr19-3384591-1	chr19	3384091	3385091	+	818.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013495, exon 19 of 19)	3' UTR (NM_013495, exon 19 of 19)	-4266.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	3.43	10.6	10.17	8.77	9.33	34.56	9.51	8.4	14.36
Merged-chr4-141159629-3	chr4	141159079	141160079	+	818.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	11657.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	66.93	86.63	70.3	45.88	52.25	84.4	88.72	93.74	61.2
Merged-chr8-66492017-1	chr8	66491517	66492517	+	818.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5487.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	4.58	2.76	5.55	5.4	2.33	5.63	8.45	9.29	7.49
Merged-chr8-13644366-3	chr8	13643850	13644850	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	33237.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	60.64	58.98	67.52	72.87	66.24	73.95	39.08	39.35	46.84
Merged-chr14-16240175-3	chr14	16239665	16240665	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001359883, exon 3 of 3)	3' UTR (NM_001359883, exon 3 of 3)	3166.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	4.58	5.07	2.77	10.12	3.73	0.0	8.45	6.19	6.25
Merged-chr17-56132815-3	chr17	56132262	56133262	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013662, exon 2 of 17)	exon (NM_013662, exon 2 of 17)	1090.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	28.03	25.8	24.05	28.34	26.59	32.15	26.4	38.03	32.48
Merged-chr2-28402334-3	chr2	28401846	28402846	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45595.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	8.01	5.99	3.7	10.8	5.6	1.61	5.28	4.86	8.74
Merged-chr1-64193358-3	chr1	64192852	64193852	+	818.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71963.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	113.84	111.05	103.59	85.69	59.71	94.04	98.23	99.93	94.93
Merged-chr6-86490129-3	chr6	86489628	86490628	+	818.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1901.0	NR_040292	381792.0	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	20.59	17.51	20.35	10.8	5.6	9.65	7.39	11.05	12.49
Merged-chr7-75704614-3	chr7	75704112	75705112	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-143726.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	56.06	62.67	39.77	37.78	34.99	52.25	40.14	34.93	35.6
Merged-chr4-126554663-3	chr4	126554184	126555184	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	2.29	4.61	1.85	4.72	1.87	3.22	4.22	0.88	0.0
Merged-chr2-35298128-3	chr2	35297659	35298659	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206368, intron 9 of 16)	intron (NM_001206368, intron 9 of 16)	15779.0	NM_146120	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	5.72	3.23	1.85	5.4	0.93	1.61	4.22	3.1	2.5
Merged-chr5-115007192-3	chr5	115006695	115007695	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4329.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	20.02	22.12	20.35	35.09	29.86	35.37	22.18	20.34	18.74
Merged-chr1-135685170-3	chr1	135684670	135685670	+	818.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34893.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	7.44	6.91	18.5	14.84	7.46	19.29	4.22	3.1	13.74
Merged-chr1-74396659-2	chr1	74396153	74397153	+	818.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153088, exon 7 of 7)	3' UTR (NM_153088, exon 7 of 7)	2343.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	133.86	113.35	107.29	145.06	90.04	111.73	179.55	153.87	75.57
Merged-chr10-127586396-2	chr10	127585902	127586902	+	818.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	34746.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	23.45	17.51	18.5	36.43	20.06	40.99	15.84	11.05	15.61
Merged-chr7-101616675-3	chr7	101616180	101617180	+	818.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-35519.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	45.76	46.54	50.87	74.22	51.78	39.39	135.19	136.63	63.7
Merged-chr8-117362536-3	chr8	117362043	117363043	+	818.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	13373.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	38.9	24.42	25.9	49.25	27.06	23.31	53.87	30.07	15.61
Merged-chr10-5826000-2	chr10	5825502	5826502	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019958, exon 5 of 5)	3' UTR (NM_019958, exon 5 of 5)	-2059.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	2.29	7.37	1.85	4.72	4.2	4.82	4.22	3.54	2.5
Merged-chr1-77227349-3	chr1	77226843	77227843	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269425.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.15	4.61	3.7	5.4	7.46	4.82	3.17	2.65	2.5
Merged-chr1-36374118-1	chr1	36373618	36374618	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277076, intron 2 of 52)	intron (NM_001277076, intron 2 of 52)	1827.0	NM_001277076	100534273.0	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	4.0	3.23	1.85	2.02	0.93	5.63	2.11	0.44	3.12
Merged-chr14-73402336-3	chr14	73401940	73402940	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-17151.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	80.09	82.02	82.32	66.8	68.11	80.38	96.11	84.01	53.08
Merged-chr7-45567897-1	chr7	45567397	45568397	+	818.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025330)	TTS (NM_025330)	-2256.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	92.67	82.02	46.25	74.22	59.71	61.89	73.93	70.3	41.22
Merged-chr7-4300395-1	chr7	4299895	4300895	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26206.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	2.86	0.46	1.85	5.4	2.33	3.22	4.22	1.77	5.0
Merged-chr9-120926406-1	chr9	120925906	120926906	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040753, intron 2 of 2)	intron (NR_040753, intron 2 of 2)	4396.0	NR_040753	78060.0	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	22.31	22.12	14.8	22.94	16.79	19.29	13.73	18.57	7.49
Merged-chr12-111505071-1	chr12	111504571	111505571	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19248.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	6.29	0.92	1.85	6.07	1.87	4.02	2.11	5.75	1.25
Merged-chr18-46467790-1	chr18	46467290	46468290	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1974.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	8.58	4.15	7.4	2.7	2.33	6.43	9.51	3.1	10.62
Merged-chr5-139393021-1	chr5	139392521	139393521	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001362206, exon 2 of 2)	exon (NM_001362206, exon 2 of 2)	3117.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	14.87	15.67	24.97	14.84	11.66	28.94	7.39	6.63	16.24
Merged-chr13-94382687-3	chr13	94382194	94383194	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	23734.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	108.12	149.75	92.5	101.88	88.17	84.4	138.36	142.82	73.69
Merged-chrX-159778998-1	chrX	159778498	159779498	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 2 of 16)	MTD|LTR|ERVL-MaLR	-61470.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.58	0.92	3.7	5.4	1.4	0.8	3.17	6.19	1.25
Merged-chr10-68842427-2	chr10	68841857	68842857	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118611.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	5.72	17.05	25.9	23.62	22.86	12.86	20.07	27.86	33.72
Merged-chr6-124993097-1	chr6	124992597	124993597	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3623.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	18.88	10.14	9.25	53.3	24.26	24.92	9.51	12.38	14.36
Merged-chr4-129792604-1	chr4	129792104	129793104	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-27875.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	18.31	15.21	13.87	20.24	11.66	16.88	43.3	33.16	18.11
Merged-chr12-41484896-1	chr12	41484396	41485396	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	1161.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	9.72	3.23	3.7	4.05	6.06	2.41	2.11	1.33	1.25
Merged-chr5-146807891-1	chr5	146807391	146808391	+	818.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-12935.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	89.24	114.27	123.02	83.66	88.17	115.75	104.56	138.84	71.2
Merged-chr16-51985661-2	chr16	51985172	51986172	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153657, exon 2 of 5)	non-coding (NR_153657, exon 2 of 5)	1615.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	8.58	6.45	1.85	8.1	7.46	4.02	6.34	0.0	0.0
Merged-chr6-72099453-1	chr6	72098953	72099953	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1845.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	44.05	83.86	63.82	63.42	118.96	72.34	127.8	119.83	44.97
Merged-chr18-84085277-1	chr18	84084777	84085777	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081300, intron 1 of 1)	GC_rich|Low_complexity|Low_complexity	1285.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	8.01	2.76	2.77	4.72	2.8	2.41	7.39	0.44	5.0
Merged-chr5-21331848-1	chr5	21331348	21332348	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 3 of 18)	L2a|LINE|L2	-40825.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	52.06	41.47	30.52	45.88	31.72	25.72	48.58	50.85	20.61
Merged-chr7-120934818-1	chr7	120934318	120935318	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025298, exon 13 of 21)	exon (NM_025298, exon 13 of 21)	17074.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	2.86	2.3	10.17	6.75	2.33	3.22	4.22	0.88	5.0
Merged-chr2-157425900-1	chr2	157425400	157426400	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	1607.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	33.75	44.24	31.45	50.6	38.25	42.6	33.8	14.59	8.12
Merged-chr11-77784428-1	chr11	77783928	77784928	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	7193.0	NM_001291212	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	23.45	15.21	27.75	58.7	47.12	54.66	10.56	9.73	8.74
Merged-chr17-10358982-1	chr17	10358482	10359482	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34380.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	197.93	141.0	66.6	196.34	142.29	88.42	132.02	117.62	50.59
Merged-chr3-148963263-1	chr3	148962763	148963763	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8628.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.58	5.07	5.55	6.75	5.13	1.61	4.22	4.86	5.62
Merged-chr8-61449003-1	chr8	61448503	61449503	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-38731.0	NM_145595	234309.0	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.57	1.84	0.0	4.72	3.27	2.41	2.11	11.05	0.0
Merged-chr6-16977563-1	chr6	16977063	16978063	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79122.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	12.01	8.29	1.85	4.72	3.73	1.61	7.39	8.4	5.0
Merged-chr1-139035428-1	chr1	139034928	139035928	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166501, intron 3 of 21)	MTD|LTR|ERVL-MaLR	57771.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	6.86	5.53	12.02	6.07	2.8	8.04	12.67	6.19	4.37
Merged-chr5-92344199-1	chr5	92343699	92344699	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	MLTR11B|LTR|ERVK	4690.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	4.58	1.84	4.62	5.4	0.93	1.61	3.17	1.77	5.62
Merged-chr8-78630639-1	chr8	78630139	78631139	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	121311.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	25.17	22.58	27.75	27.66	32.66	28.13	25.35	13.71	22.48
Merged-chr9-83577056-1	chr9	83576556	83577556	+	818.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	28718.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.72	9.22	0.0	4.05	8.4	4.02	4.22	2.65	6.25
Merged-chr12-40245696-3	chr12	40245198	40246198	+	818.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22334.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	6.29	1.38	9.25	7.42	4.67	1.61	2.11	3.1	2.5
Merged-chr17-74527363-3	chr17	74526875	74527875	+	817.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-920.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	154.45	177.4	142.44	132.24	145.08	137.45	148.92	214.01	103.05
Merged-chr16-44136711-4	chr16	44136192	44137192	+	817.94165	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	2567.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	56.06	52.99	37.0	70.85	57.38	52.25	64.43	81.36	56.21
Merged-chr4-142082893-3	chr4	142082398	142083398	+	817.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-1400.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	161.89	126.72	126.72	159.23	136.22	117.35	246.09	232.14	82.44
Merged-chr5-138831959-2	chr5	138831463	138832463	+	817.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	11883.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	5.15	3.23	0.0	4.05	5.13	2.41	5.28	0.0	1.25
Merged-chr5-151142415-2	chr5	151141920	151142920	+	817.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	47773.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	2.29	4.15	1.85	8.77	5.13	7.23	5.28	6.19	11.87
Merged-chrX-160114911-3	chrX	160114424	160115424	+	817.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163085, intron 19 of 28)	MLT1H|LTR|ERVL-MaLR	23506.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	22.88	25.8	15.72	24.29	12.13	19.29	30.63	25.2	9.37
Merged-chr11-114676642-3	chr11	114676177	114677177	+	817.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	1209.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	72.65	60.36	69.37	54.65	57.38	46.62	82.38	66.33	52.46
Merged-chr3-26991199-3	chr3	26990701	26991701	+	817.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	162653.0	NM_007900	13605.0	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536	ect2 oncogene	protein-coding	6.86	10.6	16.65	10.8	10.26	14.47	17.96	17.24	14.36
Merged-chr16-11709554-3	chr16	11709058	11710058	+	817.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70144.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	45.76	54.83	59.2	43.18	57.85	77.97	70.76	75.61	61.2
Merged-chr17-29114083-2	chr17	29113579	29114579	+	817.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20310.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	4.0	2.76	5.55	6.75	4.2	12.86	1.06	0.88	0.0
Merged-chr18-55624333-2	chr18	55623838	55624838	+	817.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-631747.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.86	4.61	9.25	6.75	8.4	8.04	3.17	5.31	3.75
Merged-chr7-3289240-3	chr7	3288716	3289716	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001093764, exon 1 of 3)	5' UTR (NM_001093764, exon 1 of 3)	178.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	20.59	29.95	12.95	4.72	12.13	8.84	11.62	13.71	21.23
Merged-chr8-26896080-2	chr8	26895581	26896581	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-71658.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	1.72	2.76	6.47	3.37	4.2	4.82	2.11	2.65	6.25
Merged-chr8-85699243-3	chr8	85698733	85699733	+	817.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357288, intron 1 of 8)	intron (NM_001357288, intron 1 of 8)	-1672.0	NR_106189	102465898.0		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	4.0	5.07	1.85	7.42	3.73	3.22	3.17	1.77	1.25
Merged-chr5-3360106-3	chr5	3359596	3360596	+	817.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	16203.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	49.2	57.6	31.45	62.75	54.11	53.85	50.7	50.85	33.72
Merged-chr2-75638344-3	chr2	75637846	75638846	+	817.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6_Mm|LTR|ERV1	-20913.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.86	2.76	3.7	3.37	1.4	0.0	44.36	39.8	53.71
Merged-chr10-112000643-2	chr10	112000127	112001127	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	-3363.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	6.29	1.84	7.4	5.4	4.2	4.82	3.17	3.98	1.25
Merged-chr4-120104799-1	chr4	120104299	120105299	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 5 of 8)	intron (NM_010657, intron 5 of 8)	-56407.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.86	1.38	0.0	4.05	1.4	0.0	0.0	1.33	2.5
Merged-chr15-9747924-2	chr15	9747349	9748349	+	817.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305042, intron 1 of 36)	intron (NM_001305042, intron 1 of 36)	1019.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	12.59	17.97	26.82	16.19	12.6	22.51	11.62	18.13	9.99
Merged-chr3-50381756-1	chr3	50381256	50382256	+	817.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011990, intron 8 of 11)	intron (NM_011990, intron 8 of 11)	61857.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	10.3	2.3	3.7	7.42	6.53	3.22	0.0	0.0	5.0
Merged-chr15-57988021-3	chr15	57987509	57988509	+	817.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173862, intron 1 of 3)	intron (NM_173862, intron 1 of 3)	2106.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	4.58	5.53	6.47	5.4	1.4	3.22	6.34	3.1	5.0
Merged-chr12-118775560-3	chr12	118775020	118776020	+	817.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70809.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.86	8.29	11.1	4.05	2.8	0.0	1.06	1.77	2.5
Merged-chr1-37315198-3	chr1	37314692	37315692	+	817.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	15354.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	56.06	46.08	48.1	48.58	48.05	26.53	46.47	40.68	12.49
Merged-chr1-36473454-3	chr1	36472972	36473972	+	817.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033570, intron 1 of 6)	intron (NM_033570, intron 1 of 6)	1875.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	4.58	5.07	1.85	7.42	3.27	1.61	7.39	4.86	1.25
Merged-chr2-30717417-3	chr2	30716912	30717912	+	817.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER115|DNA|hAT-Tip100	-3798.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	73.22	49.76	34.22	146.41	133.42	73.14	23.24	29.18	11.87
Merged-chr9-118703350-1	chr9	118702850	118703850	+	817.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 15 of 27)	intron (NM_133721, intron 15 of 27)	-8342.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.86	14.75	36.07	7.42	7.93	22.51	5.28	7.07	16.24
Merged-chr16-11439654-3	chr16	11439132	11440132	+	817.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	33984.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	8.01	11.52	10.17	12.82	11.2	13.66	12.67	11.94	18.11
Merged-chr12-25189288-1	chr12	25188788	25189788	+	817.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60114.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	9.15	3.69	10.17	19.57	11.66	9.65	3.17	11.94	2.5
Merged-chr9-114797729-3	chr9	114797238	114798238	+	817.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	-15745.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	6.29	3.69	1.85	3.37	0.47	3.22	4.22	1.77	0.0
Merged-chr8-105375284-1	chr8	105374784	105375784	+	817.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081333)	promoter-TSS (NM_001081333)	-97.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	10.87	4.61	9.25	10.8	7.0	1.61	10.56	12.38	12.49
Merged-chr1-33907104-2	chr1	33906602	33907602	+	817.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	CpG	519.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	195.64	246.52	134.12	58.03	48.98	29.74	50.7	78.71	50.59
Merged-chr6-137414746-2	chr6	137414254	137415254	+	817.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 14 of 26)	B3|SINE|B2	4033.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	6.29	4.61	7.4	4.72	4.2	0.0	2.11	3.1	0.0
Merged-chr17-27203769-2	chr17	27203194	27204194	+	817.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146075, exon 1 of 9)	exon (NM_146075, exon 1 of 9)	744.0	NM_146075	224640.0	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	88.67	62.21	107.29	140.34	87.24	118.16	84.49	38.91	49.96
Merged-chr10-67386253-3	chr10	67385767	67386767	+	817.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100986.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	5.72	3.23	12.02	11.47	5.13	6.43	9.51	3.98	8.74
Merged-chr9-95603074-3	chr9	95602577	95603577	+	817.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34551.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	27.46	25.8	9.25	26.31	5.6	3.22	24.29	26.53	19.98
Merged-chr10-93370498-2	chr10	93370011	93371011	+	817.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34300.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	30.89	30.41	9.25	40.48	44.32	44.21	5.28	5.31	5.0
Merged-chr4-12546671-2	chr4	12546174	12547174	+	817.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-360163.0	NM_173746	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	5.15	3.23	0.0	6.75	5.6	5.63	3.17	2.65	8.74
Merged-chr11-118449308-2	chr11	118448801	118449801	+	817.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001204129, exon 4 of 4)	3' UTR (NM_001204129, exon 4 of 4)	5694.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	13.73	14.75	12.02	21.59	19.13	13.66	23.24	16.36	23.11
Merged-chr11-51818441-3	chr11	51817947	51818947	+	817.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 12 of 12)	intron (NM_001357588, intron 12 of 12)	39034.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	80.09	82.94	86.95	83.66	68.11	70.73	97.17	81.8	50.59
Merged-chr8-10683303-3	chr8	10682803	10683803	+	817.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	199151.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.0	4.15	1.85	6.75	1.87	0.0	1.06	1.77	8.74
Merged-chr4-133650209-3	chr4	133649707	133650707	+	817.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-16778.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	10.87	12.44	5.55	13.49	18.66	15.27	6.34	12.38	11.87
Merged-chr3-105078200-2	chr3	105077717	105078717	+	817.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029228, intron 4 of 4)	intron (NM_029228, intron 4 of 4)	11373.0	NM_029228	75269.0	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	1.14	4.61	4.62	8.1	2.33	4.82	3.17	2.21	3.75
Merged-chr10-115316023-2	chr10	115315513	115316513	+	817.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024454)	promoter-TSS (NM_024454)	-422.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	239.12	204.59	185.92	209.16	187.54	196.12	211.24	215.34	161.75
Merged-chr9-14998788-1	chr9	14998288	14999288	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46690.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	6.29	2.76	6.47	14.84	7.0	8.04	5.28	5.31	2.5
Merged-chrX-169973026-2	chrX	169972527	169973527	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 3 of 9)	intron (NM_010797, intron 3 of 9)	5890.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	1.72	0.0	3.7	3.37	4.2	14.47	40.14	31.84	40.59
Merged-chr6-38736474-2	chr6	38735967	38736967	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 7 of 14)	intron (NM_010433, intron 7 of 14)	73398.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	16.59	11.06	12.95	18.22	3.73	28.13	6.34	5.31	5.0
Merged-chr11-77519223-1	chr11	77518723	77519723	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026185, exon 2 of 2)	3' UTR (NM_026185, exon 2 of 2)	4106.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	10.3	15.67	13.87	21.59	21.93	44.21	19.01	18.13	30.6
Merged-chr13-9738315-1	chr13	9737815	9738815	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347474, intron 1 of 14)	intron (NM_001347474, intron 1 of 14)	25495.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	11.44	9.68	12.95	10.8	14.0	12.86	19.01	11.5	10.62
Merged-chr19-28657292-1	chr19	28656792	28657792	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-20932.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	9.72	8.29	5.55	9.45	5.6	10.45	4.22	2.65	4.37
Merged-chr13-51161804-1	chr13	51161304	51162304	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9221.0	NM_029173	75124.0	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	2.86	3.23	4.62	3.37	5.13	0.0	1.06	1.33	2.5
Merged-chr19-9938349-1	chr19	9937849	9938849	+	817.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-38816.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	197.93	116.58	57.35	230.08	140.42	161.56	172.16	166.7	78.07
Merged-chr8-119876817-3	chr8	119876293	119877293	+	817.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146219, exon 5 of 5)	exon (NM_146219, exon 5 of 5)	14488.0	NM_146219	234796.0	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	10.87	3.23	2.77	9.45	3.27	11.25	9.51	3.1	8.74
Merged-chr2-122407824-3	chr2	122407328	122408328	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-32992.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	32.04	41.01	41.62	31.04	30.32	42.6	24.29	30.51	27.48
Merged-chr16-33912172-3	chr16	33911684	33912684	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	54854.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	28.03	21.66	13.87	22.27	21.46	36.97	27.46	17.69	22.48
Merged-chr10-127578169-3	chr10	127577673	127578673	+	817.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 22 of 89)	exon (NM_008512, exon 22 of 89)	42975.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	23.45	17.97	21.27	18.89	10.73	20.09	14.79	15.48	14.36
Merged-chr9-3027726-3	chr9	3027164	3028164	+	817.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	11079.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	21.74	131.78	7.4	37.11	172.61	12.86	77.1	82.69	5.0
Merged-chr9-40229035-3	chr9	40228534	40229534	+	817.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36718.0	NM_030713	80902.0	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	1.72	1.84	5.55	4.05	2.8	3.22	2.11	1.33	3.75
Merged-chr6-115334690-2	chr6	115334187	115335187	+	817.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-26264.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	11.44	7.83	4.62	26.31	7.93	11.25	4.22	11.5	4.37
Merged-chr10-37386405-3	chr10	37385879	37386879	+	817.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-247453.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	13.16	13.36	18.5	12.82	9.33	24.11	19.01	14.15	9.37
Merged-chr10-122038760-1	chr10	122038260	122039260	+	817.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	MLT1J|LTR|ERVL-MaLR	8555.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	1.14	5.53	0.0	7.42	8.86	8.04	4.22	4.42	5.0
Merged-chr4-101685346-3	chr4	101684861	101685861	+	817.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32046.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	4.58	3.69	2.77	3.37	2.8	11.25	21.12	17.24	22.48
Merged-chr8-126802800-2	chr8	126802351	126803351	+	817.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46169.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	28.03	19.35	31.45	41.83	17.26	14.47	27.46	12.82	9.99
Merged-chr4-103120564-2	chr4	103120084	103121084	+	817.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	1194.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	112.69	151.6	74.92	84.34	125.96	119.76	172.16	201.19	111.17
Merged-chr19-16209780-2	chr19	16209276	16210276	+	817.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	45678.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	6.86	17.97	23.12	11.47	9.33	8.04	14.79	10.61	8.74
Merged-chr7-25731543-2	chr7	25731051	25732051	+	817.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144922, intron 10 of 14)	intron (NM_144922, intron 10 of 14)	-12498.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	14.87	7.83	22.2	8.77	15.86	21.7	9.51	6.63	8.74
Merged-chr14-120293230-1	chr14	120292730	120293730	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	-13222.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	10.3	12.44	7.4	14.17	10.26	19.29	6.34	6.63	17.49
Merged-chr1-164075447-1	chr1	164074947	164075947	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164059, intron 6 of 7)	intron (NM_001164059, intron 6 of 7)	13371.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	14.3	25.8	33.3	21.59	22.39	19.29	51.75	43.77	24.98
Merged-chr9-65693153-1	chr9	65692653	65693653	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172536, exon 10 of 10)	3' UTR (NM_172536, exon 10 of 10)	16605.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	10.3	5.53	5.55	9.45	3.73	13.66	6.34	2.65	14.99
Merged-chr6-73710998-3	chr6	73710498	73711498	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-239977.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	10.87	9.68	10.17	19.57	10.26	9.65	15.84	7.52	8.74
Merged-chr4-106980712-1	chr4	106980212	106981212	+	817.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	57527.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	8.01	7.37	29.6	11.47	10.73	18.49	23.24	16.8	14.99
Merged-chr7-63753525-2	chr7	63753024	63754024	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130880, intron 11 of 13)	intron (NM_130880, intron 11 of 13)	-163333.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	6.86	2.76	1.85	0.67	0.93	1.61	5.28	0.0	1.25
Merged-chr13-113756480-1	chr13	113755980	113756980	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38028.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	85.24	67.27	45.32	8.1	4.67	0.8	4.22	2.65	0.0
Merged-chr8-14523252-1	chr8	14522752	14523752	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 3 of 15)	L1_Mur2|LINE|L1	-365284.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.86	10.6	5.55	10.12	6.53	10.45	13.73	2.65	8.74
Merged-chr11-119863087-2	chr11	119862598	119863598	+	817.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028898, intron 20 of 33)	intron (NM_028898, intron 20 of 33)	-19191.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	65.21	79.72	42.55	101.21	66.71	81.99	98.23	103.47	50.59
Merged-chr8-120540244-3	chr8	120539722	120540722	+	817.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 1 of 15)	intron (NM_001145896, intron 1 of 15)	1526.0	NR_106159	102466849.0		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	86.95	68.2	59.2	106.61	85.37	81.18	104.56	117.17	57.46
Merged-chr3-132029284-3	chr3	132028788	132029788	+	817.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56004.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	10.87	15.67	12.02	14.84	14.46	19.29	6.34	9.73	7.49
Merged-chr2-142698529-5	chr2	142698018	142699018	+	817.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202946.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	54.92	64.51	51.8	75.57	53.65	65.11	107.73	125.58	74.94
Merged-chr4-41737762-3	chr4	41737244	41738244	+	817.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	3615.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	9.72	6.45	4.62	6.07	8.4	11.25	8.45	9.29	8.74
Merged-chr7-58837019-2	chr7	58836508	58837508	+	817.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178806.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	4.58	1.38	0.0	6.07	2.8	4.82	1.06	0.88	3.75
Merged-chr8-69023533-3	chr8	69023033	69024033	+	817.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-65203.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	4.58	1.84	0.92	9.45	2.8	14.47	14.79	17.69	17.49
Merged-chr11-105567449-2	chr11	105566961	105567961	+	817.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22525.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	18.31	15.67	22.2	16.19	15.39	22.51	20.07	17.69	17.49
Merged-chr19-34402920-2	chr19	34402419	34403419	+	817.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72216.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	9.15	9.68	1.85	11.47	14.93	11.25	11.62	4.86	7.49
Merged-chr5-24118429-2	chr5	24117929	24118929	+	817.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161800, intron 1 of 9)	intron (NM_001161800, intron 1 of 9)	17839.0	NM_001161800	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	14.3	12.44	12.95	0.0	0.0	1.61	6.34	5.31	8.74
Merged-chr13-46907260-2	chr13	46906745	46907745	+	817.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	22473.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	10.87	13.36	12.95	11.47	8.4	16.08	20.07	20.78	29.35
Merged-chr1-176223453-3	chr1	176222957	176223957	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	-9515.0	NM_001195816	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	62.93	78.79	25.9	35.76	33.59	20.9	46.47	51.29	16.86
Merged-chr11-61499322-3	chr11	61498832	61499832	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5066.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	137.86	111.97	74.92	95.81	85.84	85.2	129.91	107.45	64.95
Merged-chr8-79030399-4	chr8	79030014	79031014	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	CpG	2077.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	28.6	7.37	10.17	61.4	48.98	51.44	12.67	5.31	4.37
Merged-chr15-36325287-3	chr15	36324768	36325768	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-42121.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	9.72	7.83	0.0	6.75	7.46	5.63	4.22	3.1	6.25
Merged-chr2-30084320-3	chr2	30083812	30084812	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153805, intron 9 of 21)	MTD|LTR|ERVL-MaLR	5614.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	12.59	5.53	11.1	14.17	4.2	16.88	16.9	6.63	14.99
Merged-chr11-50107507-3	chr11	50106991	50107991	+	817.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23869.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	54.92	55.75	43.47	68.15	40.59	69.13	79.21	78.71	57.46
Merged-chr16-21728060-3	chr16	21727574	21728574	+	817.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33409.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	16.59	6.91	9.25	29.69	26.12	12.86	29.57	19.01	9.99
Merged-chr3-9896553-2	chr3	9896048	9897048	+	817.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-62869.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	11.44	7.83	24.05	13.49	13.53	11.25	7.39	5.75	3.75
Merged-chr5-45876513-2	chr5	45876002	45877002	+	817.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18962.0	NM_001359873	209707.0	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	8.01	10.6	5.55	6.07	7.46	9.65	7.39	3.54	6.25
Merged-chr1-9631190-3	chr1	9630696	9631696	+	817.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015470)	promoter-TSS (NR_015470)	-104.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	16.02	11.98	24.97	20.24	13.06	20.9	8.45	14.59	18.74
Merged-chr18-24205476-1	chr18	24204976	24205976	+	817.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001160404)	promoter-TSS (NM_001160404)	132.0	NM_013814	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	30.32	25.8	29.6	29.01	16.79	24.11	40.14	9.73	24.98
Merged-chr6-72154162-3	chr6	72153641	72154641	+	817.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011375, exon 7 of 7)	3' UTR (NM_011375, exon 7 of 7)	-30944.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	40.04	22.12	32.37	40.48	42.92	40.99	53.87	39.35	18.11
Merged-chr2-166446013-3	chr2	166445476	166446476	+	817.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1475.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	183.06	167.73	90.65	253.69	201.53	167.19	156.32	210.03	91.81
Merged-chr15-53206104-2	chr15	53205610	53206610	+	817.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	140073.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	28.6	34.1	27.75	30.36	23.79	20.9	13.73	16.8	12.49
Merged-chr7-110768705-2	chr7	110768238	110769238	+	817.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276301, intron 1 of 14)	CpG	532.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	28.03	25.8	23.12	78.27	69.04	99.67	73.93	59.25	56.83
Merged-chr15-102510346-3	chr15	102509848	102510848	+	817.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163643, intron 1 of 15)	MIRb|SINE|MIR	352.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	50.34	67.74	29.6	44.53	51.32	46.62	35.91	35.82	17.49
Merged-chr1-92693181-3	chr1	92692639	92693639	+	817.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44298.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	17.16	7.37	3.7	13.49	6.53	12.06	7.39	12.82	8.74
Merged-chr6-97279688-3	chr6	97279164	97280164	+	817.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-26884.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	18.31	11.98	13.87	18.22	9.8	12.06	19.01	14.15	11.87
Merged-chr3-51328666-2	chr3	51328165	51329165	+	817.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	11979.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	96.68	91.24	60.12	108.63	99.37	100.47	117.24	135.3	71.82
Merged-chr12-75511730-3	chr12	75511248	75512248	+	817.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 3 of 13)	intron (NM_012024, intron 3 of 13)	84452.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	6.29	3.69	3.7	6.75	7.46	8.04	6.34	2.65	6.87
Merged-chr8-47690755-3	chr8	47690249	47691249	+	817.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15590.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	32.04	69.58	20.35	58.03	64.84	74.75	50.7	51.29	53.08
Merged-chr4-89145581-3	chr4	89145055	89146055	+	817.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	8185.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	1.14	2.3	1.85	6.75	2.33	8.04	2.11	0.88	1.87
Merged-chr7-101300541-1	chr7	101300041	101301041	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152152, intron 1 of 16)	intron (NR_152152, intron 1 of 16)	1547.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	16.02	9.22	1.85	13.49	4.67	3.22	11.62	7.96	9.99
Merged-chr11-102276739-1	chr11	102276239	102277239	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_148953, exon 3 of 5)	exon (NM_148953, exon 3 of 5)	7916.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	2.29	0.0	1.85	3.37	1.87	1.61	4.22	1.77	2.5
Merged-chr19-29572469-2	chr19	29571963	29572963	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081319, intron 8 of 25)	Tigger7|DNA|TcMar-Tigger	50181.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	20.59	31.79	39.77	22.27	15.86	11.25	41.19	46.87	28.73
Merged-chr13-89858741-1	chr13	89858241	89859241	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-116229.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.58	5.99	1.85	8.1	5.13	1.61	5.28	3.98	3.75
Merged-chr13-34684017-1	chr13	34683517	34684517	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	31094.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	2.86	4.61	3.7	6.75	2.33	3.22	6.34	2.21	1.25
Merged-chr6-13853472-1	chr6	13852972	13853972	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-13530.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	6.29	3.69	3.7	3.37	6.06	0.0	2.11	0.88	4.37
Merged-chr6-92481312-1	chr6	92480812	92481812	+	817.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134460)	promoter-TSS (NM_001134460)	80.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	1.14	1.84	1.85	2.02	0.0	1.61	4.22	3.54	7.49
Merged-chr15-101278226-1	chr15	101277726	101278726	+	817.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6075.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	1.14	1.84	0.0	1.35	3.73	1.61	2.11	0.44	1.25
Merged-chr15-86267189-1	chr15	86266689	86267689	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	MTE2b|LTR|ERVL-MaLR	-10486.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.0	5.99	5.55	8.77	9.8	10.45	8.45	7.96	6.25
Merged-chr1-166843470-1	chr1	166842970	166843970	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	156260.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	4.0	4.61	2.77	10.8	4.2	1.61	2.11	6.19	5.0
Merged-chrX-49112698-1	chrX	49112198	49113198	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271448, intron 2 of 14)	intron (NM_001271448, intron 2 of 14)	175544.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	6.86	11.52	8.32	9.45	8.86	11.25	0.0	3.1	6.25
Merged-chr9-85424130-1	chr9	85423630	85424630	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a-int|LTR|ERVL-MaLR	-96980.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	3.43	3.69	0.0	6.75	3.27	1.61	5.28	3.54	2.5
Merged-chr13-52033183-1	chr13	52032683	52033683	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63558.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	25.17	30.41	38.85	26.31	13.53	53.85	42.25	40.24	34.35
Merged-chrX-13516696-1	chrX	13516196	13517196	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001284504)	TTS (NM_001284504)	49024.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	18.31	30.41	33.3	29.01	32.19	34.56	30.63	24.76	23.11
Merged-chr18-20961568-3	chr18	20961062	20962062	+	817.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026301, intron 1 of 5)	CpG	16937.0	NM_026301	67664.0	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	9.15	3.69	1.85	8.77	7.0	2.41	4.22	3.54	5.0
Merged-chr5-74277909-1	chr5	74277409	74278409	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	MLT1I|LTR|ERVL-MaLR	82583.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	2.86	4.15	4.62	4.05	5.13	0.0	2.11	3.1	6.25
Merged-chr1-86503613-2	chr1	86503108	86504108	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22949.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	29.17	20.74	9.25	41.16	28.46	26.53	33.8	30.51	31.23
Merged-chr3-116422908-1	chr3	116422408	116423408	+	817.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173553, intron 1 of 13)	intron (NM_001173553, intron 1 of 13)	1124.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	24.03	16.59	12.95	30.36	9.8	17.68	24.29	11.94	14.99
Merged-chr18-46621687-2	chr18	46621189	46622189	+	816.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23985.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.15	5.99	9.25	2.7	3.73	3.22	11.62	3.98	3.75
Merged-chr16-50529719-5	chr16	50529210	50530210	+	816.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	intron (NR_040379, intron 1 of 5)	1208.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	81.23	85.25	70.3	90.41	116.16	87.61	83.44	112.31	59.33
Merged-chr3-60481909-2	chr3	60481431	60482431	+	816.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	9101.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	19.45	32.25	4.62	32.39	40.12	36.17	47.53	48.2	33.72
Merged-chr3-60526401-3	chr3	60525916	60526916	+	816.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	25237.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	60.07	72.8	57.35	99.18	73.24	38.58	98.23	189.25	46.84
Merged-chr1-160441348-3	chr1	160440854	160441854	+	816.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013862, intron 17 of 20)	intron (NM_013862, intron 17 of 20)	-89783.0	NM_001038621	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	8.58	2.76	6.47	4.05	8.4	4.82	5.28	2.65	5.0
Merged-chr13-64315703-3	chr13	64315239	64316239	+	816.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3029.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	6.29	10.6	1.85	6.75	7.93	2.41	11.62	10.17	4.37
Merged-chr11-116029494-3	chr11	116028994	116029994	+	816.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172569)	promoter-TSS (NM_172569)	-822.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	121.85	129.48	97.12	112.68	101.23	119.76	133.08	217.1	112.42
Merged-chr15-6384217-2	chr15	6383719	6384719	+	816.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-2529.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	53.2	27.65	29.6	43.18	34.52	44.21	22.18	15.92	20.61
Merged-chr6-8508539-3	chr6	8508052	8509052	+	816.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040452, exon 2 of 2)	non-coding (NR_040452, exon 2 of 2)	609.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	28.03	33.18	14.8	18.22	26.12	22.51	38.02	44.22	18.11
Merged-chr13-3907430-2	chr13	3906920	3907920	+	816.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	10800.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	5.15	2.3	3.7	5.4	2.33	6.43	1.06	6.19	1.25
Merged-chr1-13360866-3	chr1	13360361	13361361	+	816.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	RLTR12BD_Mm|LTR|ERVK	11568.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.72	4.15	3.7	6.07	3.27	8.04	8.45	2.21	11.87
Merged-chr6-135323568-3	chr6	135323080	135324080	+	816.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13196.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	1.14	1.84	3.7	6.07	0.47	0.0	3.17	1.33	5.0
Merged-chr1-51597186-2	chr1	51596659	51597659	+	816.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151621)	promoter-TSS (NR_151621)	-441.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	2.29	2.3	1.85	2.02	1.87	6.43	4.22	3.98	5.62
Merged-chr17-24193125-1	chr17	24192625	24193625	+	816.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163851, intron 1 of 8)	intron (NM_001163851, intron 1 of 8)	6832.0	NM_001163852	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	2.86	2.3	1.85	9.45	0.93	0.0	64.43	45.54	24.98
Merged-chr4-149709106-2	chr4	149708604	149709604	+	816.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7475.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	29.17	30.41	22.2	18.89	22.39	28.13	30.63	22.99	13.74
Merged-chr3-146159560-3	chr3	146159054	146160054	+	816.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	ORR1B1|LTR|ERVL-MaLR	9380.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	9.72	12.44	5.55	10.12	7.0	12.86	7.39	13.27	5.0
Merged-chr10-53980069-1	chr10	53979569	53980569	+	816.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 5 of 12)	intron (NM_008548, intron 5 of 12)	95727.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	9.15	4.61	5.55	15.52	5.6	5.63	2.11	3.54	1.87
Merged-chr10-75784050-3	chr10	75783540	75784540	+	816.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358778, exon 5 of 5)	exon (NM_001358778, exon 5 of 5)	-2618.0	NM_001346523	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	5.15	0.92	0.0	3.37	1.4	3.22	6.34	2.21	6.25
Merged-chr19-53479711-2	chr19	53479222	53480222	+	816.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-14926.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	8.01	2.3	2.77	4.72	7.46	10.45	5.28	3.98	5.0
Merged-chr15-102377106-4	chr15	102376637	102377637	+	816.78125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10169.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	9.15	7.83	5.55	14.17	5.6	25.72	3.17	6.63	4.37
Merged-chr2-159843482-3	chr2	159842967	159843967	+	816.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103874.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	8.01	7.83	3.7	6.75	2.33	2.41	5.28	3.54	6.25
Merged-chr3-146328130-3	chr3	146327618	146328618	+	816.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50826.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	1.72	2.76	0.0	9.45	7.0	1.61	2.11	3.54	3.75
Merged-chr3-129936723-1	chr3	129936223	129937223	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	33483.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	3.43	1.84	1.85	4.05	2.8	6.43	0.0	1.77	3.75
Merged-chr4-40772984-2	chr4	40772478	40773478	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15093.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	7.44	2.76	14.8	12.82	7.46	12.86	12.67	11.05	8.12
Merged-chr9-56209013-2	chr9	56208511	56209511	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172924, intron 6 of 6)	L1MA5|LINE|L1	-47941.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	4.58	0.92	5.55	2.02	3.73	4.82	6.34	2.65	7.49
Merged-chr15-59685573-1	chr15	59685073	59686073	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	14.3	17.51	24.05	25.64	14.93	36.17	16.9	16.36	22.48
Merged-chr6-34350378-2	chr6	34349874	34350874	+	816.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3772.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	12.59	10.6	6.47	41.16	28.46	14.47	10.56	11.05	3.75
Merged-chr13-49242416-3	chr13	49241926	49242926	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	5868.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	31.46	23.5	15.72	45.88	24.26	26.53	16.9	18.57	23.11
Merged-chr4-117137371-3	chr4	117136903	117137903	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-3440.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	11.44	11.98	10.17	26.31	19.59	11.25	21.12	19.9	14.36
Merged-chr16-45145344-3	chr16	45144853	45145853	+	816.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028756, intron 5 of 6)	intron (NM_028756, intron 5 of 6)	13320.0	NM_001356453	74102.0	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	11.44	28.11	14.8	15.52	11.2	7.23	8.45	7.07	13.74
Merged-chr8-31981051-1	chr8	31980551	31981551	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62848.0	NM_178591	211323.0	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	5.15	1.84	3.7	2.02	1.4	1.61	1.06	3.1	3.12
Merged-chr16-21392905-3	chr16	21392392	21393392	+	816.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30226.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	6.29	2.76	3.7	9.45	4.2	3.22	6.34	2.21	3.12
Merged-chr19-34621125-3	chr19	34620634	34621634	+	816.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 2 of 2)	MTD|LTR|ERVL-MaLR	8677.0	NM_001362130	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	17.16	7.83	7.4	10.8	2.8	11.25	5.28	9.29	11.87
Merged-chr10-44465626-1	chr10	44465126	44466126	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6878.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.44	5.07	1.85	7.42	3.73	1.61	1.06	5.75	1.25
Merged-chr1-94053633-1	chr1	94053133	94054133	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger8|DNA|TcMar-Tigger	-1080.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	5.15	2.76	1.85	4.05	6.06	5.63	3.17	1.33	8.74
Merged-chr5-90685205-1	chr5	90684705	90685705	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44678.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	11.44	6.91	3.7	24.96	15.86	12.86	4.22	1.77	5.0
Merged-chr2-130529574-1	chr2	130529074	130530074	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 7 of 21)	intron (NM_001355161, intron 7 of 21)	34175.0	NR_040348	321014.0	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	9.15	4.15	7.4	17.54	7.93	3.22	2.11	2.21	4.37
Merged-chr2-91256847-1	chr2	91256347	91257347	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289678)	promoter-TSS (NM_001289678)	34.0	NM_001289678	80708.0	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	4.0	1.84	6.47	7.42	0.0	0.0	4.22	5.75	3.75
Merged-chr7-117429121-1	chr7	117428621	117429621	+	816.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 1 of 11)	MER74B|LTR|ERVL	48142.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.43	5.07	3.7	4.05	7.46	0.0	2.11	3.54	0.0
Merged-chr15-66810236-2	chr15	66809742	66810742	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	21587.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	8.58	17.97	15.72	31.71	11.66	24.92	21.12	20.78	16.24
Merged-chrX-73910228-2	chrX	73909748	73910748	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138630, intron 1 of 21)	intron (NM_138630, intron 1 of 21)	1050.0	NM_138630	171207.0	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	18.31	21.66	34.22	15.52	12.13	22.51	23.24	30.95	28.73
Merged-chr14-20105665-2	chr14	20105189	20106189	+	816.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-22517.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.58	5.53	13.87	8.1	8.86	12.86	11.62	7.96	7.49
Merged-chr4-102495682-2	chr4	102495161	102496161	+	816.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-74399.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	16.02	17.05	18.5	8.77	4.67	5.63	7.39	8.4	5.62
Merged-chr14-77905534-3	chr14	77905046	77906046	+	816.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1307.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	60.64	67.27	18.5	53.3	33.59	21.7	117.24	113.19	75.57
Merged-chr10-60333846-3	chr10	60333366	60334366	+	816.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 40 of 68)	intron (NM_001252635, intron 40 of 68)	-12985.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	4.58	2.76	5.55	3.37	1.87	1.61	3.17	0.0	3.12
Merged-chr7-19343638-3	chr7	19343136	19344136	+	816.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	10.3	3.69	5.55	3.37	7.93	4.02	12.67	8.84	6.87
Merged-chr11-24076249-2	chr11	24075763	24076763	+	816.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1793.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.57	1.38	2.77	0.0	2.8	1.61	4.22	2.65	3.75
Merged-chr2-102988033-2	chr2	102987535	102988535	+	816.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85478.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	34.32	42.39	27.75	91.76	44.32	73.95	54.92	53.94	64.95
Merged-chr5-143488171-2	chr5	143487673	143488673	+	816.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 8 of 14)	intron (NM_144915, intron 8 of 14)	23680.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	30.89	25.8	38.85	32.39	36.39	55.46	53.87	44.22	32.48
Merged-chrX-96097017-3	chrX	96096467	96097467	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	922.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	79.52	83.86	60.12	74.89	73.24	36.17	88.72	95.07	38.1
Merged-chr4-55652032-3	chr4	55651520	55652520	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119545.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	262.0	245.14	98.05	296.2	272.91	228.28	194.34	226.83	136.77
Merged-chr2-101665446-3	chr2	101664941	101665941	+	816.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12979.0	NM_009424	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	1.14	2.3	0.0	2.02	1.87	3.22	1.06	3.98	1.25
Merged-chr6-142991745-3	chr6	142991238	142992238	+	816.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27286.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	8.58	8.29	3.7	20.92	13.53	28.13	9.51	8.84	14.99
Merged-chr16-78541081-2	chr16	78540598	78541598	+	816.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19218.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	17.73	10.14	12.95	16.19	9.8	18.49	25.35	18.13	6.87
Merged-chr8-85507184-1	chr8	85506684	85507684	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 4 of 11)	intron (NM_173866, intron 4 of 11)	14567.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	8.58	9.22	12.02	8.1	2.33	9.65	6.34	3.98	10.62
Merged-chr16-24766610-1	chr16	24766110	24767110	+	816.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	44755.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.29	2.3	8.32	7.42	7.0	2.41	2.11	5.31	3.75
Merged-chr11-93725926-1	chr11	93725426	93726426	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159840.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	6.29	4.61	0.0	7.42	4.67	15.27	4.22	7.07	1.87
Merged-chr6-99242301-2	chr6	99241805	99242805	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	24210.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	64.64	42.85	14.8	58.03	41.52	49.83	88.72	72.07	21.86
Merged-chr9-65790283-2	chr9	65789776	65790776	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	37288.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	22.31	24.42	12.95	31.04	14.0	24.11	14.79	13.71	9.37
Merged-chr13-109685916-3	chr13	109685409	109686409	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-217900.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	26.89	18.89	12.95	11.47	13.53	12.86	11.62	10.61	6.25
Merged-chr6-34876214-3	chr6	34875748	34876748	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199145, intron 2 of 3)	intron (NM_199145, intron 2 of 3)	1817.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	90.96	85.25	49.95	120.77	94.7	69.93	57.03	50.85	39.35
Merged-chr1-106401072-3	chr1	106400562	106401562	+	816.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	145569.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	7.44	4.15	1.85	8.1	1.87	3.22	5.28	2.65	8.12
Merged-chr14-51220222-1	chr14	51219722	51220722	+	816.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16527.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	11.44	3.23	3.7	3.37	2.33	6.43	2.11	3.54	2.5
Merged-chr10-67181060-3	chr10	67180537	67181537	+	816.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 2 of 25)	intron (NM_207221, intron 2 of 25)	-4713.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	54.35	80.64	46.25	49.93	48.98	46.62	50.7	53.5	37.47
Merged-chr16-22545925-3	chr16	22545418	22546418	+	816.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13734.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	68.65	52.99	31.45	53.3	32.66	49.83	59.15	69.86	28.1
Merged-chr12-101722424-3	chr12	101721940	101722940	+	816.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3917.0	NM_001082976	74413.0	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	4.0	10.14	3.7	1.35	6.06	3.22	8.45	10.61	5.0
Merged-chr4-129741402-3	chr4	129740907	129741907	+	816.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011317, intron 1 of 8)	CpG	896.0	NM_011317	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	115.55	114.74	103.59	138.99	94.23	119.76	188.0	201.19	105.55
Merged-chr5-8351486-3	chr5	8350974	8351974	+	816.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	16686.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	30.89	46.54	24.05	24.96	34.99	26.53	13.73	21.22	26.23
Merged-chr7-90216087-3	chr7	90215561	90216561	+	816.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49371.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	12.01	17.05	6.47	22.94	18.19	11.25	26.4	22.99	15.61
Merged-chr15-58423903-3	chr15	58423401	58424401	+	816.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 4 of 23)	intron (NM_145959, intron 4 of 23)	8433.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	30.89	25.8	22.2	31.04	27.99	24.92	31.69	40.24	22.48
Merged-chr16-48853885-3	chr16	48853376	48854376	+	816.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	11324.0	NM_020509	57262.0	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	2.29	2.76	3.7	8.77	2.33	1.61	3.17	2.65	1.25
Merged-chr3-109467475-3	chr3	109466975	109467975	+	816.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-106532.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	23.45	16.59	30.52	29.69	22.86	31.35	19.01	10.61	5.0
Merged-chr8-22706113-2	chr8	22705621	22706621	+	816.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010546, exon 2 of 21)	exon (NM_010546, exon 2 of 21)	462.0	NM_010546	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	257.42	258.5	123.94	238.85	236.52	149.5	245.04	179.52	122.41
Merged-chr7-24112236-2	chr7	24111770	24112770	+	816.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021307)	promoter-TSS (NM_021307)	-50.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	4.58	9.68	5.55	8.77	7.93	8.04	15.84	2.65	2.5
Merged-chr16-92443779-2	chr16	92443279	92444279	+	816.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	22390.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	22.88	11.06	12.95	39.13	26.59	19.29	8.45	3.1	2.5
Merged-chr16-57309963-1	chr16	57309463	57310463	+	816.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 6 of 9)	intron (NM_025599, intron 6 of 9)	-17112.0	NM_027651	71027.0	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	1.72	2.3	1.85	2.02	2.8	1.61	7.39	3.98	7.49
Merged-chr2-146872908-1	chr2	146872408	146873408	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033298, intron 4 of 13)	intron (NM_001033298, intron 4 of 13)	17019.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	2.86	6.45	3.7	10.12	3.73	6.43	1.06	1.77	5.0
Merged-chr19-53763086-3	chr19	53762605	53763605	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	85799.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	1.14	2.76	10.17	2.7	1.4	4.02	5.28	2.21	6.25
Merged-chr18-80455739-3	chr18	80455241	80456241	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 5 of 12)	intron (NM_026295, intron 5 of 12)	13926.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	6.29	4.61	1.85	4.72	3.73	1.61	2.11	4.86	0.0
Merged-chr16-17409698-2	chr16	17409199	17410199	+	816.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-3385.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	101.83	116.12	101.74	118.08	97.97	115.75	80.27	83.13	49.34
Merged-chr15-86274427-1	chr15	86273927	86274927	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-3248.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	58.92	52.53	28.67	87.71	76.97	55.46	34.85	48.2	23.73
Merged-chr17-32891364-1	chr17	32890864	32891864	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207245, intron 1 of 3)	intron (NM_207245, intron 1 of 3)	239.0	NM_207245	240066.0	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	9.72	12.9	5.55	22.94	20.06	32.96	41.19	36.26	28.73
Merged-chr2-11005967-1	chr2	11005467	11006467	+	816.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-166415.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	3.43	3.69	3.7	4.05	2.8	5.63	2.11	3.1	5.62
Merged-chr3-154540273-1	chr3	154539773	154540773	+	816.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56438.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	4.58	4.61	3.7	4.05	3.27	12.86	9.51	5.75	2.5
Merged-chr7-51987077-2	chr7	51986594	51987594	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	18620.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.0	0.46	5.55	4.72	3.73	12.86	2.11	1.33	1.87
Merged-chr10-8974152-2	chr10	8973653	8974653	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-88083.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.58	1.84	8.32	5.4	1.4	3.22	3.17	3.98	1.25
Merged-chr5-118381516-3	chr5	118380992	118381992	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136265.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	18.88	18.43	20.35	44.53	51.78	52.25	48.58	20.78	19.36
Merged-chr8-69087978-2	chr8	69087469	69088469	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007509)	promoter-TSS (NM_007509)	-767.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	53.2	57.6	37.0	115.38	92.84	98.87	98.23	91.53	53.71
Merged-chr7-141464010-2	chr7	141463506	141464506	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-102.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	15.45	5.53	11.1	12.14	5.13	16.08	5.28	3.54	6.25
Merged-chr10-127620306-4	chr10	127619850	127620850	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	798.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	80.66	84.32	132.27	107.28	108.7	217.83	161.6	114.52	96.8
Merged-chr12-72843727-3	chr12	72843224	72844224	+	816.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74041.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	23.45	38.71	25.9	26.99	20.99	28.94	31.69	27.86	21.86
Merged-chr13-63254063-1	chr13	63253563	63254563	+	816.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	14034.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	63.5	72.8	30.52	97.83	108.23	80.38	52.81	60.58	33.1
Merged-chr15-98541175-3	chr15	98540641	98541641	+	816.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NR_153345	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	33.75	37.32	20.35	73.54	38.25	32.15	33.8	27.86	21.23
Merged-chr17-45807619-3	chr17	45807135	45808135	+	816.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.72	3.69	0.0	10.12	5.6	5.63	3.17	3.1	1.25
Merged-chr15-98957379-3	chr15	98956892	98957892	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3891.0	NM_011653	22142.0	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	6.29	3.69	7.4	10.12	2.33	6.43	6.34	4.42	2.5
Merged-chr10-121334748-3	chr10	121334276	121335276	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	16868.0	NM_001361015	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.29	3.23	5.55	7.42	7.93	0.0	3.17	1.33	1.25
Merged-chr3-119814982-3	chr3	119814561	119815561	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31673.0	NM_019550	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	24.03	29.49	24.05	22.27	20.06	6.43	24.29	17.69	13.12
Merged-chr10-79726318-3	chr10	79725834	79726834	+	816.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008226, intron 3 of 7)	intron (NM_008226, intron 3 of 7)	9700.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	5.72	0.92	1.85	1.35	0.47	3.22	2.11	2.65	2.5
Merged-chr9-110666116-2	chr9	110665616	110666616	+	816.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	9613.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	40.04	37.78	26.82	32.39	26.59	27.33	76.05	63.23	49.34
Merged-chr18-80392342-2	chr18	80391929	80392929	+	816.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28175.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	25.74	27.65	24.05	36.43	22.86	18.49	7.39	6.63	6.87
Merged-chr2-173089630-2	chr2	173089146	173090146	+	816.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29879.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	2.29	2.76	0.0	2.7	2.33	4.82	2.11	1.77	1.25
Merged-chr11-54630330-4	chr11	54629805	54630805	+	816.145813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	(TG)n|Simple_repeat|Simple_repeat	34159.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	84.66	70.04	60.12	76.24	61.11	52.25	74.99	49.96	56.83
Merged-chr2-167293010-3	chr2	167292507	167293507	+	816.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-52470.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	9.72	7.37	0.92	42.51	26.59	8.04	13.73	6.63	6.87
Merged-chr14-70971649-2	chr14	70971146	70972146	+	816.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 6 of 7)	intron (NM_001302094, intron 6 of 7)	81539.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	29.17	26.73	23.12	33.74	31.72	58.68	16.9	8.84	11.87
Merged-chr12-98831344-3	chr12	98830836	98831836	+	816.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 21 of 43)	intron (NM_001081191, intron 21 of 43)	60314.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	9.72	2.3	11.1	8.77	5.13	3.22	11.62	8.84	11.24
Merged-chr18-11835178-3	chr18	11834664	11835664	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-4110.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	20.59	25.8	20.35	27.66	20.06	26.53	30.63	27.41	15.61
Merged-chr3-37673972-3	chr3	37673470	37674470	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34023.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	15.45	10.14	3.7	8.77	7.93	6.43	2.11	2.65	6.25
Merged-chr3-75203026-3	chr3	75202560	75203560	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-59288.0	NM_172515	213234.0	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	2.29	2.3	3.7	1.35	0.93	0.0	3.17	1.77	1.25
Merged-chr14-26455063-3	chr14	26454564	26455564	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 12 of 22)	intron (NM_001310445, intron 12 of 22)	79560.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	12.59	7.37	0.92	12.82	7.93	13.66	11.62	3.54	6.25
Merged-chr10-100159985-3	chr10	100159474	100160474	+	816.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144153.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	44.05	40.55	33.3	44.53	46.18	43.4	48.58	68.09	36.85
Merged-chr15-95826576-2	chr15	95826073	95827073	+	816.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	intron (NR_155276, intron 1 of 1)	3499.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	197.36	177.4	112.84	133.59	102.17	65.11	196.45	198.53	78.69
Merged-chr4-135440224-3	chr4	135439742	135440742	+	816.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-6437.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	52.63	58.52	23.12	64.77	45.72	38.58	74.99	74.28	34.97
Merged-chr7-114020874-3	chr7	114020350	114021350	+	816.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145584, intron 7 of 15)	intron (NM_145584, intron 7 of 15)	96931.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	6.29	5.07	5.55	6.07	3.73	6.43	7.39	11.5	5.0
Merged-chrX-11239207-3	chrX	11238682	11239682	+	816.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-60075.0	NM_001111037	100042922.0	Mm.374311	NM_001111037	ENSMUSG00000100626	H2al1a	Gm14483|H2A.L.1|H2AL1|H2al1c|H2al1d|H2al1f|H2al1g|H2al1h|H2al1i	H2A histone family member L1A	protein-coding	4.0	3.23	5.55	4.05	3.27	6.43	3.17	2.65	5.0
Merged-chr12-84801838-3	chr12	84801324	84802324	+	816.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	intron (NM_013589, intron 16 of 34)	28554.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	12.59	9.68	9.25	8.77	5.13	10.45	21.12	6.63	6.25
Merged-chr6-115367019-3	chr6	115366529	115367529	+	816.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	4680.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	33.18	28.11	21.27	40.48	18.66	16.88	27.46	26.97	11.87
Merged-chr3-65658144-2	chr3	65657640	65658640	+	816.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1148.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	29.17	22.58	3.7	43.86	44.32	21.7	14.79	15.92	1.87
Merged-chr19-8921164-1	chr19	8920664	8921664	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024256, intron 1 of 4)	intron (NM_024256, intron 1 of 4)	771.0	NM_024256	72727.0	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	110.98	116.12	118.39	128.2	89.57	99.67	124.63	95.51	76.19
Merged-chr17-3273950-1	chr17	3273450	3274450	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52623.0	NM_001122998	24001.0	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	4.58	0.46	0.0	0.67	1.4	1.61	0.0	0.88	1.25
Merged-chr7-81202525-2	chr7	81202081	81203081	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11223.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	28.03	18.43	22.2	60.05	44.32	73.14	51.75	46.43	28.73
Merged-chr1-155902215-1	chr1	155901715	155902715	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039184, intron 23 of 37)	intron (NM_001039184, intron 23 of 37)	71040.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	25.74	29.03	7.4	28.34	33.12	25.72	142.59	158.3	54.33
Merged-chr3-31408333-2	chr3	31407826	31408826	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-98007.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.86	5.53	1.85	14.17	9.33	6.43	27.46	7.52	5.0
Merged-chr16-45032807-3	chr16	45032301	45033301	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-61210.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	37.76	42.85	40.7	45.21	31.72	45.82	13.73	10.61	18.74
Merged-chr6-47649006-1	chr6	47648506	47649506	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR18C_MM|LTR|ERVK	6088.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	18.88	5.53	14.8	12.82	5.13	8.04	0.0	0.88	1.25
Merged-chr5-99335197-4	chr5	99334734	99335734	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-82307.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	105.83	112.89	89.72	121.45	68.58	116.55	127.8	113.64	100.55
Merged-chr14-121455742-1	chr14	121455242	121456242	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49512.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	5.15	2.3	0.0	4.05	1.87	4.02	4.22	2.21	2.5
Merged-chr8-70892678-1	chr8	70892178	70893178	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053248)	promoter-TSS (NM_053248)	79.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	13.16	2.76	0.92	2.7	3.27	4.82	6.34	1.77	1.25
Merged-chr1-23762996-3	chr1	23762474	23763474	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172124, exon 1 of 4)	exon (NM_172124, exon 1 of 4)	1048.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	5.15	1.84	3.7	0.67	1.4	1.61	2.11	0.0	1.25
Merged-chr10-37226742-1	chr10	37226242	37227242	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87816.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	13.73	13.82	8.32	22.94	15.86	13.66	13.73	12.38	18.11
Merged-chr2-117114054-1	chr2	117113554	117114554	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7017.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	14.87	27.19	7.4	18.22	16.33	20.9	21.12	11.94	15.61
Merged-chr11-69681324-1	chr11	69680824	69681824	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163571, intron 1 of 10)	intron (NM_001163571, intron 1 of 10)	646.0	NM_030702	80886.0	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	271.15	214.73	184.99	226.71	217.86	161.56	235.53	266.18	146.14
Merged-chr19-5024373-1	chr19	5023873	5024873	+	816.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007854, intron 1 of 11)	CpG	367.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	80.09	61.75	70.3	78.94	38.72	70.73	77.1	57.04	39.35
Merged-chr11-118147546-1	chr11	118147046	118148046	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18327.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	20.02	36.86	22.2	112.68	89.57	151.92	44.36	34.49	44.97
Merged-chr8-125829052-2	chr8	125828555	125829555	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 17 of 33)	intron (NM_175561, intron 17 of 33)	-68859.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	10.87	6.45	25.9	14.17	10.26	15.27	13.73	15.92	11.24
Merged-chr2-26516461-1	chr2	26515961	26516961	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12534.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	3.43	3.23	14.8	8.1	3.27	5.63	1.06	3.54	1.87
Merged-chr6-82913457-2	chr6	82912947	82913947	+	816.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011350, exon 14 of 14)	3' UTR (NM_011350, exon 14 of 14)	26322.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	11.44	7.37	7.4	18.89	14.46	7.23	20.07	7.96	8.12
Merged-chr11-53796081-1	chr11	53795581	53796581	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	25608.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	108.12	91.7	78.62	105.26	66.71	90.83	108.79	107.89	90.56
Merged-chr2-127252971-1	chr2	127252471	127253471	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175145, intron 2 of 3)	MIRc|SINE|MIR	4996.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	10.87	9.22	3.7	18.89	5.13	6.43	8.45	7.07	6.25
Merged-chr17-50196148-1	chr17	50195648	50196648	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5651.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	2.86	2.3	0.92	4.05	5.13	5.63	3.17	3.98	2.5
Merged-chr18-10772417-1	chr18	10771917	10772917	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 10 of 20)	intron (NM_144860, intron 10 of 20)	10559.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	4.0	5.53	1.85	9.45	5.13	6.43	3.17	3.98	6.25
Merged-chr3-68798615-1	chr3	68798115	68799115	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	37120.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	10.3	19.35	7.4	19.57	23.33	19.29	2.11	2.21	0.0
Merged-chr11-55100086-1	chr11	55099586	55100586	+	816.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010299, intron 1 of 3)	MIRb|SINE|MIR	2101.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	13.73	6.45	11.1	12.82	7.93	6.43	9.51	3.98	6.25
Merged-chrX-159924929-3	chrX	159924377	159925377	+	815.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 7 of 12)	intron (NM_001135728, intron 7 of 12)	-17816.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	14.87	14.28	9.25	14.84	10.73	15.27	7.39	7.52	11.87
Merged-chr7-142098026-3	chr7	142097525	142098525	+	815.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2741.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	4.0	2.76	0.92	0.67	2.8	3.22	1.06	3.54	2.5
Merged-chr13-30657958-3	chr13	30657443	30658443	+	815.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2116.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	14.3	8.75	14.8	8.1	6.06	7.23	16.9	7.07	1.87
Merged-chr17-17645871-2	chr17	17645374	17646374	+	815.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21385.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	7.44	8.75	7.4	10.8	0.47	6.43	7.39	1.77	7.49
Merged-chr4-126210134-2	chr4	126209643	126210643	+	815.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7433.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	13.16	0.92	3.7	11.47	7.93	11.25	44.36	27.41	10.62
Merged-chr18-39010174-2	chr18	39009662	39010662	+	815.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	17017.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.29	4.61	0.0	2.7	3.27	5.63	4.22	0.88	1.87
Merged-chr2-144337451-3	chr2	144336941	144337941	+	815.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-5361.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	52.63	15.21	9.25	46.56	23.79	32.15	28.52	27.41	11.24
Merged-chr10-84330036-1	chr10	84329536	84330536	+	815.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110435.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	1.72	7.37	9.25	16.19	9.8	14.47	7.39	4.42	4.37
Merged-chr19-40993585-3	chr19	40993074	40994074	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008528, intron 1 of 16)	RSINE1|SINE|B4	961.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	78.37	76.49	62.9	100.53	129.22	99.67	68.65	84.9	18.74
Merged-chr7-19360522-3	chr7	19360009	19361009	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001010836)	promoter-TSS (NM_001010836)	-707.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	42.9	42.39	31.45	31.04	14.93	43.4	34.85	34.49	28.73
Merged-chr3-69598485-3	chr3	69597980	69598980	+	815.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020026, intron 1 of 2)	CpG	480.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	45.19	29.03	47.17	77.59	44.78	78.77	63.37	59.25	43.09
Merged-chr10-96875905-3	chr10	96875404	96876404	+	815.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159864.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	6.29	9.68	29.6	21.59	21.46	37.78	14.79	8.4	16.24
Merged-chr10-19583197-3	chr10	19582716	19583716	+	815.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8733.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	48.62	86.17	35.15	60.72	49.45	60.28	74.99	72.07	69.95
Merged-chr1-48595888-1	chr1	48595388	48596388	+	815.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-648728.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	2.86	5.53	0.0	5.4	1.87	3.22	3.17	3.54	2.5
Merged-chr17-27908865-3	chr17	27908361	27909361	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286040)	promoter-TSS (NM_001286040)	381.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	245.41	193.07	205.34	228.05	148.35	128.61	175.33	164.93	135.52
Merged-chr2-155775789-3	chr2	155775289	155776289	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010808, intron 1 of 8)	CpG	447.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	4.58	2.3	0.0	2.02	2.8	0.0	1.06	2.21	5.0
Merged-chr2-170101390-3	chr2	170100881	170101881	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29839.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.29	2.76	0.92	6.07	5.13	1.61	1.06	2.21	5.0
Merged-chr3-27622551-3	chr3	27622027	27623027	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-37532.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	26.89	16.13	16.65	25.64	11.2	21.7	27.46	10.17	5.0
Merged-chr13-54589550-3	chr13	54589037	54590037	+	815.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025933)	promoter-TSS (NM_025933)	537.0	NM_178605	28126.0	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	31.46	37.32	43.47	31.71	34.06	36.97	32.74	45.1	28.73
Merged-chr2-46442185-2	chr2	46441690	46442690	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	745585.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	53.77	89.39	43.47	56.0	62.98	104.49	87.66	74.28	56.21
Merged-chr4-135241877-2	chr4	135241395	135242395	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	30865.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	62.35	35.94	45.32	78.27	55.05	65.11	50.7	52.18	30.6
Merged-chr2-148558552-2	chr2	148558057	148559057	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114058.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	2.86	1.38	1.85	2.02	1.87	0.0	2.11	0.44	0.0
Merged-chr4-28815474-2	chr4	28814903	28815903	+	815.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010141, intron 1 of 16)	CpG	2258.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	2.86	1.84	0.0	2.02	1.4	1.61	4.22	2.21	3.75
Merged-chr16-38799359-2	chr16	38798820	38799820	+	815.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	883.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	14.87	13.82	24.05	12.14	10.26	6.43	3.17	1.33	5.0
Merged-chr7-75645773-2	chr7	75645286	75646286	+	815.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	190252.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	39.47	44.24	26.82	48.58	35.45	29.74	15.84	22.99	14.99
Merged-chr16-18877962-3	chr16	18877472	18878472	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010435, intron 1 of 24)	intron (NM_010435, intron 1 of 24)	1222.0	NM_010435	15260.0	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	44.62	30.87	49.95	45.88	32.66	63.5	49.64	45.99	41.22
Merged-chr2-120159070-3	chr2	120158574	120159574	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4499.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	78.94	79.72	54.57	88.39	84.9	44.21	95.06	115.41	38.72
Merged-chr5-24781276-3	chr5	24780769	24781769	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-23426.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	13.16	8.75	7.4	12.14	7.46	25.72	21.12	23.88	7.49
Merged-chr10-95532417-3	chr10	95531900	95532900	+	815.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	17238.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	159.6	111.05	82.32	153.84	77.91	101.28	168.99	179.08	75.57
Merged-chr13-49191108-5	chr13	49190591	49191591	+	815.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	3544.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	166.47	188.0	161.87	261.79	291.1	251.59	305.24	300.23	141.77
Merged-chr3-27289096-2	chr3	27288611	27289611	+	815.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27966.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	37.76	39.17	29.6	65.45	67.64	54.66	95.06	94.62	61.83
Merged-chr18-39446846-3	chr18	39446326	39447326	+	815.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	40419.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	18.88	19.81	8.32	19.57	20.99	21.7	24.29	28.74	26.23
Merged-chr4-116666876-2	chr4	116666368	116667368	+	815.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15194.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	24.03	23.96	11.1	39.13	34.99	28.13	11.62	22.55	7.49
Merged-chr2-153351529-1	chr2	153351029	153352029	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	5390.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	112.69	138.7	102.67	105.93	147.88	101.28	129.91	156.53	81.19
Merged-chr8-126569499-1	chr8	126568999	126569999	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	23937.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	12.59	10.14	9.25	7.42	9.8	11.25	7.39	7.52	12.49
Merged-chr4-35131785-3	chr4	35131275	35132275	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-20280.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	20.02	26.26	5.55	14.84	15.86	25.72	14.79	12.38	7.49
Merged-chr10-74967080-3	chr10	74966600	74967600	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010311)	promoter-TSS (NM_010311)	-77.0	NM_010311	14687.0	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	6.86	2.76	0.0	7.42	0.47	4.82	1.06	0.88	1.25
Merged-chr14-62922830-1	chr14	62922330	62923330	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 3 of 11)	intron (NM_175546, intron 3 of 11)	57288.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	6.29	3.23	12.95	4.05	10.26	4.02	5.28	1.77	5.62
Merged-chr17-47909410-2	chr17	47908907	47909907	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028767, intron 1 of 16)	intron (NM_028767, intron 1 of 16)	15225.0	NM_028767	74123.0	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	5.72	1.84	14.8	12.14	2.33	2.41	2.11	2.65	3.75
Merged-chr16-92428280-1	chr16	92427780	92428780	+	815.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-28202.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	7.44	4.15	9.25	15.52	9.8	13.66	3.17	4.86	5.0
Merged-chr6-24160019-2	chr6	24159525	24160525	+	815.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	intron (NM_019481, intron 1 of 14)	8067.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	6.86	8.75	1.85	16.87	6.06	9.65	3.17	3.98	1.25
Merged-chr12-80071044-2	chr12	80070544	80071544	+	815.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41969.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	3.43	5.07	4.62	4.72	0.47	4.82	11.62	0.88	2.5
Merged-chr7-84163779-3	chr7	84163267	84164267	+	815.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11874.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	6.86	0.92	5.55	3.37	5.13	3.22	11.62	3.98	14.36
Merged-chr5-121843431-3	chr5	121843013	121844013	+	815.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	53.77	61.75	49.02	67.47	74.17	45.82	44.36	37.58	27.48
Merged-chr19-16456328-2	chr19	16455839	16456839	+	815.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008137, intron 1 of 6)	intron (NM_008137, intron 1 of 6)	20672.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	8.01	6.91	5.55	10.8	7.0	1.61	5.28	3.1	3.75
Merged-chr1-163926569-3	chr1	163926051	163927051	+	815.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-2549.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	9.15	15.21	12.02	10.8	4.67	4.82	11.62	6.63	10.62
Merged-chr2-58042077-2	chr2	58041561	58042561	+	815.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10691.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	2.29	2.76	0.0	2.7	7.46	3.22	3.17	3.1	0.0
Merged-chr5-21138775-1	chr5	21138275	21139275	+	815.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-37504.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	18.88	14.75	24.05	16.19	8.86	34.56	21.12	19.01	21.86
Merged-chr17-15831976-3	chr17	15831469	15832469	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5383.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.43	3.69	5.55	0.67	1.87	4.82	2.11	2.65	1.25
Merged-chr4-116655791-3	chr4	116655281	116656281	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4107.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	318.06	286.15	191.47	255.72	240.72	179.24	285.17	370.09	131.15
Merged-chr9-63092163-3	chr9	63091692	63092692	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54788.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	31.46	28.57	37.92	22.94	23.79	34.56	38.02	40.68	24.98
Merged-chr10-60817035-3	chr10	60816535	60817535	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029770, intron 1 of 16)	intron (NM_029770, intron 1 of 16)	14546.0	NM_029770	107449.0	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	11.44	6.91	2.77	14.84	7.46	7.23	4.22	6.19	5.0
Merged-chr9-58247257-3	chr9	58246760	58247760	+	815.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311088, exon 2 of 9)	exon (NM_001311088, exon 2 of 9)	2526.0	NM_008884	18854.0	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	32.04	39.63	27.75	45.88	27.52	49.83	64.43	44.22	37.47
Merged-chr7-139188523-1	chr7	139188023	139189023	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021302)	promoter-TSS (NM_021302)	-29.0	NM_021302	57740.0	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	4.58	0.46	1.85	2.7	1.4	3.22	3.17	3.54	2.5
Merged-chr4-139218689-3	chr4	139218166	139219166	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	24555.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	19.45	33.18	28.67	37.11	33.59	46.62	54.92	32.72	28.73
Merged-chr14-102660528-2	chr14	102660030	102661030	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	322102.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	4.0	1.38	0.0	5.4	2.33	0.0	1.06	1.77	0.62
Merged-chr7-48983481-1	chr7	48982981	48983981	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	24408.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.86	11.52	5.55	12.82	11.66	6.43	6.34	8.4	5.0
Merged-chr4-149737444-2	chr4	149736955	149737955	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284270, intron 1 of 10)	intron (NM_001284270, intron 1 of 10)	315.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	35.47	19.35	24.05	40.48	24.72	20.09	31.69	11.94	13.12
Merged-chr11-97440115-2	chr11	97439608	97440608	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10052.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	25.17	13.36	18.5	28.34	10.73	20.9	9.51	3.54	2.5
Merged-chr8-82918143-2	chr8	82917643	82918643	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	54787.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	8.58	1.38	4.62	56.68	48.05	56.27	5.28	2.21	3.75
Merged-chr18-38436497-1	chr18	38435997	38436997	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	L1M4|LINE|L1	17590.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	9.72	11.06	12.95	17.54	15.39	8.04	20.07	14.15	23.11
Merged-chr6-145214195-1	chr6	145213695	145214695	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163628, intron 1 of 2)	URR1A|DNA|hAT-Charlie	3048.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	14.87	16.59	12.95	17.54	11.66	19.29	19.01	21.22	14.99
Merged-chr11-70198526-1	chr11	70198026	70199026	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19B|LTR|ERVK	-15384.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	6.29	3.23	1.85	3.37	4.2	8.84	2.11	4.86	6.25
Merged-chr5-129874109-2	chr5	129873613	129874613	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_145487, intron 2 of 8)	intron (NR_145487, intron 2 of 8)	4975.0	NR_145486	18682.0	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	9.72	14.75	26.82	16.19	18.66	20.9	24.29	19.01	14.99
Merged-chr17-8276856-2	chr17	8276368	8277368	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6945.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	5.72	9.22	6.47	5.4	4.67	4.82	3.17	6.63	7.49
Merged-chr14-87125722-1	chr14	87125222	87126222	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 1 of 27)	B3|SINE|B2	15502.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	6.29	6.45	8.32	3.37	3.27	3.22	2.11	3.54	2.5
Merged-chr14-31410389-3	chr14	31409887	31410887	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	7290.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	29.75	18.43	27.75	48.58	24.72	33.76	25.35	19.46	27.48
Merged-chr8-78509775-3	chr8	78509293	78510293	+	815.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009033)	promoter-TSS (NM_009033)	465.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	229.39	226.71	124.87	162.61	186.6	147.9	229.19	223.29	110.54
Merged-chr5-127616255-1	chr5	127615755	127616755	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	1137.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	120.7	165.42	139.67	132.24	111.5	183.26	164.76	156.53	126.15
Merged-chr18-49777656-2	chr18	49777137	49778137	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22036.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	4.0	5.99	3.7	4.72	12.13	0.8	11.62	12.38	6.25
Merged-chr1-62051628-1	chr1	62051128	62052128	+	815.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 3 of 22)	intron (NM_001081050, intron 3 of 22)	84481.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	4.58	3.23	3.7	2.02	3.27	4.82	2.11	1.77	5.0
Merged-chr13-97573778-3	chr13	97573262	97574262	+	815.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046157, intron 2 of 2)	ORR1G|LTR|ERVL-MaLR	13762.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	47.48	34.1	38.85	16.19	18.19	12.06	61.26	46.87	14.99
Merged-chr19-60666027-3	chr19	60665538	60666538	+	815.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-85015.0	NM_001172096	78832.0	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	6.86	0.92	3.7	8.77	4.2	3.22	36.97	15.48	13.74
Merged-chr3-100734760-3	chr3	100734278	100735278	+	815.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-49305.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	8.58	5.07	11.1	5.4	4.67	4.82	10.56	3.98	8.12
Merged-chr17-80130880-3	chr17	80130387	80131387	+	815.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	3416.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	13.73	8.29	9.25	28.34	14.46	12.86	15.84	19.01	5.0
Merged-chr11-65794518-3	chr11	65794017	65795017	+	815.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6158.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	10.87	19.35	10.17	25.64	16.79	14.47	29.57	18.13	27.48
Merged-chr8-36816265-2	chr8	36815753	36816753	+	815.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-83199.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	21.74	20.74	11.1	39.81	39.65	22.51	20.07	15.48	16.86
Merged-chr1-36231082-3	chr1	36230576	36231576	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198899, intron 2 of 40)	intron (NM_198899, intron 2 of 40)	13226.0	NM_198899	320011.0	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	7.44	14.75	7.4	12.82	12.6	7.23	14.79	19.46	24.36
Merged-chr4-142076149-3	chr4	142075629	142076629	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-8169.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	38.33	57.6	47.17	47.23	36.39	35.37	142.59	131.32	63.08
Merged-chr11-82974152-3	chr11	82973694	82974694	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	10871.0	NR_106144	102466846.0		NR_106144	ENSMUSG00000098840	Mir7679	Gm27908|mmu-mir-7679	microRNA 7679	ncRNA	36.04	18.89	7.4	29.01	37.32	31.35	30.63	33.16	27.48
Merged-chr19-47121256-3	chr19	47120742	47121742	+	815.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011053, intron 25 of 35)	intron (NM_011053, intron 25 of 35)	17052.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	4.0	2.76	3.7	5.4	3.27	4.82	1.06	7.07	14.36
Merged-chr2-121408506-5	chr2	121408000	121409000	+	815.426208	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153075, intron 4 of 12)	Lx5c|LINE|L1	5292.0	NM_153075	212670.0	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	18.88	23.5	37.0	18.89	21.93	8.04	24.29	19.01	16.24
Merged-chr12-73723242-3	chr12	73722736	73723736	+	815.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 10 of 13)	ORR1D1|LTR|ERVL-MaLR	138440.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	8.58	15.67	3.7	21.59	23.33	24.92	12.67	8.4	12.49
Merged-chr4-63590125-3	chr4	63589631	63590631	+	815.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	10633.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	32.04	35.94	33.3	35.76	30.79	47.42	32.74	40.24	23.11
Merged-chr1-72237241-2	chr1	72236798	72237798	+	815.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6695.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	10.87	23.04	30.52	8.1	13.53	17.68	11.62	11.94	8.74
Merged-chr5-53547089-3	chr5	53546590	53547590	+	815.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8689.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	5.72	2.3	0.0	3.37	7.46	4.82	3.17	4.42	3.75
Merged-chr1-191333081-3	chr1	191332612	191333612	+	815.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	L1M2|LINE|L1	7147.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	49.2	37.32	29.6	49.93	27.52	29.74	40.14	45.99	37.47
Merged-chr18-30160442-2	chr18	30159931	30160931	+	815.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112434.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	12.01	10.6	17.57	16.87	9.8	10.45	9.51	4.42	1.87
Merged-chr17-69215857-2	chr17	69215338	69216338	+	815.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	56482.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	10.87	5.53	1.85	17.54	17.26	24.92	25.35	16.36	3.12
Merged-chr11-117968531-4	chr11	117968077	117969077	+	815.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007707, intron 1 of 1)	CpG	789.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	100.68	68.2	72.15	102.56	50.38	57.87	63.37	46.43	57.46
Merged-chr13-109260482-2	chr13	109260023	109261023	+	815.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-64221.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	6.29	3.23	0.0	8.1	2.8	3.22	11.62	6.19	8.12
Merged-chr1-152555199-3	chr1	152554694	152555694	+	815.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	70023.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	126.42	111.97	81.4	101.21	93.77	114.94	98.23	102.14	102.42
Merged-chr17-56469002-3	chr17	56468503	56469503	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	-6782.0	NM_001252456	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	8.01	1.84	5.55	4.72	0.47	1.61	3.17	2.21	0.0
Merged-chr1-133132915-3	chr1	133132419	133133419	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133819, exon 1 of 2)	exon (NM_133819, exon 1 of 2)	1753.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	243.69	311.49	203.49	188.25	192.67	110.92	173.21	215.78	173.62
Merged-chr11-116197585-1	chr11	116197085	116198085	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271898, intron 2 of 13)	intron (NM_001271898, intron 2 of 13)	-1270.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	60.64	41.93	25.9	53.98	41.99	71.54	17.96	10.61	15.61
Merged-chr1-125526152-1	chr1	125525652	125526652	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34443.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	2.29	2.76	0.0	6.07	7.46	6.43	2.11	0.88	0.0
Merged-chrX-99696358-2	chrX	99695875	99696875	+	815.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-124694.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	21.74	20.27	28.67	46.56	13.53	19.29	35.91	30.95	20.61
Merged-chr5-146761047-1	chr5	146760547	146761547	+	815.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	33909.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	9.15	3.69	12.95	6.07	6.53	10.45	30.63	27.41	14.99
Merged-chr11-118095204-2	chr11	118094710	118095710	+	815.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167746, intron 27 of 80)	ORR1E|LTR|ERVL-MaLR	34009.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.86	3.23	5.55	2.7	5.6	5.63	2.11	1.77	4.37
Merged-chr1-176827102-1	chr1	176826602	176827602	+	815.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 3 of 18)	intron (NM_001357390, intron 3 of 18)	9031.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	97.25	141.92	92.5	142.37	111.96	99.67	124.63	207.38	99.92
Merged-chr11-108215033-3	chr11	108214538	108215538	+	815.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	128850.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	71.51	101.37	54.57	82.99	109.16	71.54	103.51	100.81	29.98
Merged-chr10-77523339-3	chr10	77522839	77523839	+	815.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7009.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	41.76	38.71	49.02	38.46	38.72	64.3	66.54	43.33	43.09
Merged-chr10-42759903-3	chr10	42759417	42760417	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1579.0	NM_001359283	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	15.45	16.13	12.02	13.49	11.66	4.02	20.07	21.22	15.61
Merged-chr5-139483667-3	chr5	139483150	139484150	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159908, intron 1 of 6)	intron (NM_001159908, intron 1 of 6)	841.0	NM_133349	100494.0	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	160.75	127.64	49.95	174.08	155.81	90.83	102.45	136.63	31.23
Merged-chr4-35068386-2	chr4	35067894	35068894	+	815.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-83661.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	18.31	18.43	16.65	11.47	12.6	1.61	5.28	2.65	8.74
Merged-chr13-104108671-2	chr13	104108156	104109156	+	815.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	958.0	NM_029447	75805.0	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	17.73	27.19	18.5	25.64	28.46	40.19	26.4	22.99	13.12
Merged-chr10-43833069-2	chr10	43832587	43833587	+	815.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131055, exon 3 of 3)	non-coding (NR_131055, exon 3 of 3)	7180.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	2.86	6.91	16.65	9.45	16.33	20.9	8.45	9.29	9.99
Merged-chr8-110998360-3	chr8	110997853	110998853	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007916)	promoter-TSS (NM_007916)	-530.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	81.23	114.27	46.25	45.88	74.17	50.64	103.51	115.85	62.45
Merged-chrX-155212183-3	chrX	155211649	155212649	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291865)	TTS (NM_001291865)	4300.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	25.17	44.24	27.75	39.13	41.99	41.8	39.08	68.54	31.23
Merged-chr1-154103779-3	chr1	154103272	154104272	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-97415.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	89.24	94.46	62.9	112.68	83.97	55.46	60.2	86.66	33.72
Merged-chr5-113993305-3	chr5	113992778	113993778	+	815.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 1 of 14)	CpG	479.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	138.44	148.83	126.72	102.56	105.43	159.15	160.54	120.27	114.29
Merged-chr13-101805849-3	chr13	101805340	101806340	+	815.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37623.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	13.73	5.99	12.02	6.75	1.4	6.43	27.46	10.61	7.49
Merged-chr13-105048925-2	chr13	105048437	105049437	+	815.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	5993.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	5.72	2.3	2.77	8.1	5.6	0.0	2.11	1.33	5.0
Merged-chr5-64810661-2	chr5	64810166	64811166	+	815.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7143.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	231.68	224.4	127.64	187.57	192.67	218.63	211.24	233.46	119.28
Merged-chr3-87359481-3	chr3	87358988	87359988	+	815.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	1607.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	155.03	193.53	67.52	180.15	162.81	107.71	367.55	383.8	129.28
Merged-chr11-113733756-3	chr11	113733237	113734237	+	815.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163346, intron 1 of 1)	intron (NM_001163346, intron 1 of 1)	17423.0	NM_020006	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	22.31	22.12	24.05	5.4	5.6	12.86	9.51	3.1	3.75
Merged-chr12-108907005-1	chr12	108906505	108907505	+	815.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	12733.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	9.15	3.23	0.0	4.72	7.0	14.47	3.17	3.1	7.49
Merged-chr16-22348735-3	chr16	22348229	22349229	+	815.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53741.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	77.23	67.74	74.0	67.47	84.44	106.9	104.56	94.62	89.31
Merged-chr10-40643455-3	chr10	40642951	40643951	+	815.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133568, intron 3 of 4)	MTC|LTR|ERVL-MaLR	13440.0	NR_133568	70503.0	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	5.15	3.23	3.7	4.05	5.6	7.23	8.45	5.31	8.74
Merged-chr11-40763587-2	chr11	40763098	40764098	+	815.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8312.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.57	4.15	5.55	6.07	2.8	0.0	4.22	1.33	1.87
Merged-chr2-166127319-2	chr2	166126839	166127839	+	815.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252579, intron 2 of 20)	intron (NM_001252579, intron 2 of 20)	27946.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	8.01	2.3	0.0	6.75	3.27	4.82	4.22	2.21	1.25
Merged-chr7-35745325-2	chr7	35744823	35745823	+	815.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	9131.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	9.72	6.45	11.1	13.49	4.2	18.49	3.17	1.77	1.25
Merged-chr7-116328043-3	chr7	116327534	116328534	+	815.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER63D|DNA|hAT-Blackjack	6156.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	11.44	11.98	3.7	11.47	12.6	17.68	11.62	16.8	13.74
Merged-chr16-90386303-3	chr16	90385911	90386911	+	815.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015755)	promoter-TSS (NM_015755)	14.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	28.6	15.21	8.32	24.29	17.26	6.43	12.67	10.61	1.25
Merged-chr13-24447506-3	chr13	24447013	24448013	+	815.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	32391.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	32.61	23.04	27.75	29.69	19.13	20.9	32.74	33.6	33.72
Merged-chr3-149461820-3	chr3	149461311	149462311	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187074.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	17.16	17.51	27.75	12.82	14.93	25.72	13.73	16.36	8.74
Merged-chr19-34420620-3	chr19	34420128	34421128	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54507.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	9.72	4.15	0.0	14.17	6.53	4.82	13.73	15.92	12.49
Merged-chrX-152218667-3	chrX	152218177	152219177	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005475, intron 10 of 13)	intron (NM_001005475, intron 10 of 13)	-14550.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	8.01	4.15	1.85	4.72	4.2	3.22	5.28	1.77	2.5
Merged-chr6-114224684-3	chr6	114224183	114225183	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172890, intron 6 of 13)	intron (NM_172890, intron 6 of 13)	-57952.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.72	2.76	5.55	5.4	3.73	5.63	0.0	2.21	4.37
Merged-chr8-88099045-3	chr8	88098544	88099544	+	815.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	19563.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	18.88	23.04	25.9	10.8	13.06	18.49	23.24	26.53	20.61
Merged-chr11-85123672-4	chr11	85123145	85124145	+	815.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029934, intron 1 of 33)	B1_Mur1|SINE|Alu	16310.0	NM_001029934	237898.0	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	62.35	68.66	27.75	53.3	52.25	38.58	67.6	64.56	44.34
Merged-chr2-11239728-2	chr2	11239231	11240231	+	815.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 4 of 17)	intron (NM_008859, intron 4 of 17)	67349.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.0	3.23	5.55	2.7	3.73	4.82	3.17	3.1	4.37
Merged-chr7-28547764-3	chr7	28547247	28548247	+	815.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081115)	promoter-TSS (NM_001081115)	-493.0	NM_001081115	233038.0	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	7.44	5.53	8.32	9.45	4.67	12.86	3.17	3.98	8.12
Merged-chr4-116777221-2	chr4	116776724	116777724	+	815.075012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	L2|LINE|L2	30335.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	4.0	4.15	1.85	6.75	5.13	7.23	8.45	3.98	0.62
Merged-chr7-16192549-2	chr7	16192034	16193034	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17139.0	NR_102730	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	2.86	3.69	1.85	0.67	0.0	0.0	8.45	3.54	5.0
Merged-chr5-99268913-1	chr5	99268413	99269413	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-15986.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	54.92	66.81	65.67	57.35	46.65	49.83	26.4	22.99	14.36
Merged-chr6-146662856-2	chr6	146662358	146663358	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046277, intron 1 of 2)	B3A|SINE|B2	5640.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	5.15	2.3	4.62	2.7	4.67	0.8	1.06	4.42	3.75
Merged-chr9-32485528-1	chr9	32485028	32486028	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	MLT1G1|LTR|ERVL-MaLR	55924.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	10.87	12.44	27.75	8.1	14.0	20.09	8.45	7.52	12.49
Merged-chr14-27383662-1	chr14	27383162	27384162	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	intron (NM_027871, intron 4 of 10)	22273.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	16.59	14.75	11.1	20.92	15.86	23.31	8.45	5.31	13.74
Merged-chr11-70687185-3	chr11	70686697	70687697	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190379, intron 1 of 20)	intron (NM_001190379, intron 1 of 20)	908.0	NM_001190376	216874.0	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	126.42	100.91	155.39	102.56	71.38	145.49	113.01	127.34	96.18
Merged-chrX-47880277-1	chrX	47879777	47880777	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053123, intron 5 of 23)	intron (NM_053123, intron 5 of 23)	12336.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	4.0	3.23	0.0	1.35	6.06	3.22	3.17	0.0	5.0
Merged-chr17-48265608-1	chr17	48265108	48266108	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	1313.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	62.93	70.5	46.25	74.22	83.51	83.59	100.34	76.49	68.7
Merged-chr18-39636740-1	chr18	39636240	39637240	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136757.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	61.78	97.23	77.7	103.23	86.3	102.88	117.24	120.27	71.82
Merged-chr17-47610869-1	chr17	47610369	47611369	+	815.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020048)	promoter-TSS (NM_020048)	623.0	NM_016859	53414.0	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	98.97	83.86	61.05	88.39	76.04	85.2	116.18	120.71	43.09
Merged-chr15-86228406-2	chr15	86227917	86228917	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	Tigger5b|DNA|TcMar-Tigger	13958.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	9.15	10.14	16.65	24.96	17.73	14.47	13.73	11.05	8.74
Merged-chr12-76536912-2	chr12	76536388	76537388	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	3328.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	86.95	86.17	74.92	66.8	54.58	90.02	92.94	98.16	76.82
Merged-chr15-88505274-1	chr15	88504774	88505774	+	815.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95028.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	4.58	7.83	3.7	5.4	1.87	6.43	30.63	19.46	12.49
Merged-chr12-35532318-1	chr12	35531818	35532818	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2671.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	22.31	18.89	19.42	15.52	9.33	14.47	8.45	10.17	11.24
Merged-chr12-85818611-3	chr12	85818112	85819112	+	815.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360813)	TTS (NM_001360813)	6281.0	NM_001360451	58520.0	Mm.143795	NM_021446	ENSMUSG00000021252	Erg28	0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11	ergosterol biosynthesis 28	protein-coding	8.58	3.23	0.0	2.7	1.87	0.0	3.17	0.44	2.5
Merged-chr17-80693024-2	chr17	80692525	80693525	+	815.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	35000.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	2.86	3.23	1.85	9.45	11.2	17.68	19.01	15.03	16.86
Merged-chr7-80575939-3	chr7	80575433	80576433	+	814.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40814.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	8.01	6.91	1.85	6.75	3.73	4.82	14.79	11.5	8.12
Merged-chr1-66859674-3	chr1	66859171	66860171	+	814.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	RMER16|LTR|ERVK	3638.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	30.32	24.42	23.12	7.42	7.0	8.84	7.39	4.42	7.49
Merged-chr5-31488071-3	chr5	31487563	31488563	+	814.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026296, exon 2 of 2)	exon (NM_026296, exon 2 of 2)	2204.0	NM_026296	67656.0	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	9.15	10.6	21.27	9.45	6.53	18.49	12.67	10.17	19.98
Merged-chr10-56944585-3	chr10	56944076	56945076	+	814.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	512595.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	6.86	6.91	5.55	12.14	10.26	6.43	5.28	6.19	1.25
Merged-chr2-92485817-2	chr2	92485326	92486326	+	814.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25308.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	2.86	2.76	1.85	10.8	3.27	13.66	22.18	20.34	18.11
Merged-chr3-75743838-2	chr3	75743335	75744335	+	814.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88104.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	33.18	32.25	34.22	24.96	32.66	39.39	19.01	23.88	30.6
Merged-chr5-139407285-3	chr5	139406761	139407761	+	814.9087519999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177000, intron 1 of 1)	intron (NM_177000, intron 1 of 1)	874.0	NM_177000	319772.0	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	82.38	90.31	136.89	103.23	103.56	163.17	116.18	124.69	98.68
Merged-chr1-151105418-3	chr1	151104919	151105919	+	814.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32615.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	30.89	24.42	38.85	27.66	21.46	49.03	32.74	45.54	23.73
Merged-chr6-13070619-3	chr6	13070130	13071130	+	814.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027992, intron 2 of 8)	intron (NM_027992, intron 2 of 8)	871.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	56.63	47.46	23.12	39.13	34.52	16.88	61.26	56.16	34.35
Merged-chr13-37592259-3	chr13	37591777	37592777	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-233761.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	26.31	17.51	33.3	30.36	14.0	29.74	24.29	19.46	19.98
Merged-chr3-61415409-3	chr3	61414905	61415905	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50898.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	168.76	254.35	112.84	155.19	163.28	154.33	175.33	229.48	113.66
Merged-chr4-63545869-3	chr4	63545355	63546355	+	814.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024173, intron 1 of 2)	intron (NM_024173, intron 1 of 2)	1090.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	82.95	87.09	48.1	86.36	92.84	65.91	114.07	99.49	46.84
Merged-chr14-14603668-3	chr14	14603161	14604161	+	814.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99364.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	16.59	17.05	16.65	17.54	8.4	17.68	4.22	11.05	9.99
Merged-chr13-74854540-3	chr13	74854044	74855044	+	814.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45784.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	4.0	1.84	1.85	1.35	4.2	1.61	0.0	6.63	3.75
Merged-chr11-117196933-2	chr11	117196427	117197427	+	814.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2734.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	75.51	42.39	62.9	66.12	34.99	38.58	79.21	56.6	46.22
Merged-chr5-115262086-3	chr5	115261603	115262603	+	814.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302449, intron 1 of 16)	intron (NM_001302449, intron 1 of 16)	10792.0	NM_001302448	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	46.91	51.61	39.77	56.0	27.99	42.6	62.31	86.22	56.83
Merged-chr1-127836782-3	chr1	127836294	127837294	+	814.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011737, intron 2 of 9)	MLT1A0|LTR|ERVL-MaLR	3496.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	11.44	6.45	12.95	10.12	4.67	6.43	16.9	11.5	11.24
Merged-chr8-46672915-3	chr8	46672407	46673407	+	814.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55616.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	17.16	18.89	24.97	20.92	20.99	26.53	14.79	22.99	24.98
Merged-chr2-102940327-2	chr2	102939839	102940839	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-38674.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.0	7.37	1.85	11.47	6.06	12.06	6.34	5.75	13.74
Merged-chr9-73085941-2	chr9	73085455	73086455	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301230, intron 5 of 6)	intron (NM_001301230, intron 5 of 6)	-16443.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	5.15	9.22	0.0	10.8	6.53	4.82	8.45	2.21	11.87
Merged-chr12-100936317-3	chr12	100935828	100936828	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 20 of 29)	intron (NM_026681, intron 20 of 29)	-28130.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	2.86	0.92	0.0	6.75	0.93	0.0	1.06	0.88	2.5
Merged-chr12-33041619-1	chr12	33041119	33042119	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 15 of 19)	MIRb|SINE|MIR	51256.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	11.44	20.74	18.5	30.36	34.52	20.9	17.96	26.53	9.99
Merged-chr1-51539829-2	chr1	51539325	51540325	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	56893.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	4.58	2.3	3.7	9.45	6.53	8.04	7.39	4.42	9.99
Merged-chr2-170169321-1	chr2	170168821	170169821	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26646.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	25.17	18.43	14.8	22.27	20.06	29.74	27.46	21.22	19.98
Merged-chr14-61789195-2	chr14	61788697	61789697	+	814.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106824.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	7.44	3.23	0.0	3.37	3.27	0.0	9.51	6.19	8.12
Merged-chr15-89149696-3	chr15	89149164	89150164	+	814.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011161)	promoter-TSS (NM_011161)	-58.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	13.16	4.15	5.55	1.35	2.8	1.61	7.39	6.19	0.0
Merged-chr6-73436691-2	chr6	73436175	73437175	+	814.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_108032)	TTS (NR_108032)	32992.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	12.59	10.6	3.7	1.35	0.0	4.82	7.39	6.63	6.25
Merged-chr16-65454020-2	chr16	65453532	65454532	+	814.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-66597.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	9.72	3.23	0.92	2.7	2.33	8.04	5.28	10.61	6.87
Merged-chr19-16780451-3	chr19	16779975	16780975	+	814.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173028, intron 1 of 71)	CpG	458.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	69.79	83.86	49.02	70.85	84.9	49.03	111.96	80.03	51.84
Merged-chr5-77387021-1	chr5	77386521	77387521	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21024.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.57	3.23	1.85	6.07	2.33	8.04	2.11	3.1	4.37
Merged-chr6-106458879-1	chr6	106458379	106459379	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	290158.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	6.86	6.45	4.62	8.77	13.06	19.29	6.34	3.54	5.62
Merged-chr10-127564000-1	chr10	127563500	127564500	+	814.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 41 of 88)	intron (NM_008512, intron 41 of 88)	-29441.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	7.44	4.61	12.95	6.75	3.27	15.27	4.22	7.07	11.24
Merged-chr12-80867184-1	chr12	80866684	80867684	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	57263.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	2.29	4.15	12.02	10.12	1.87	10.45	4.22	6.63	3.12
Merged-chr14-30671280-3	chr14	30670768	30671768	+	814.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 6 of 12)	intron (NM_177815, intron 6 of 12)	16893.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	84.66	70.5	73.07	75.57	75.11	71.54	85.55	83.57	51.84
Merged-chr6-92437335-1	chr6	92436835	92437835	+	814.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134461, intron 2 of 7)	intron (NM_001134461, intron 2 of 7)	44057.0	NM_001134460	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	2.29	0.92	0.0	4.05	2.8	4.82	6.34	5.31	6.87
Merged-chr14-106760274-1	chr14	106759774	106760774	+	814.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-273754.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	1.14	4.61	0.0	4.72	4.2	3.22	4.22	2.21	1.25
Merged-chr6-54116442-3	chr6	54115940	54116940	+	814.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	L3|LINE|CR1	76508.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	54.92	64.97	50.87	79.62	82.11	60.28	31.69	41.56	41.84
Merged-chr4-99126998-2	chr4	99126496	99127496	+	814.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-6081.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	10.3	9.22	5.55	6.75	14.46	9.65	13.73	16.8	8.74
Merged-chr5-139734952-3	chr5	139734466	139735466	+	814.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	1367.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	44.05	44.24	57.35	41.83	28.92	28.13	95.06	89.32	31.85
Merged-chr9-122901204-3	chr9	122900712	122901712	+	814.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2034.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	6.86	8.75	5.55	6.75	2.33	3.22	49.64	33.6	39.97
Merged-chr13-94144222-3	chr13	94143722	94144722	+	814.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	86426.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	36.04	19.35	9.25	52.63	30.32	14.47	24.29	18.13	13.74
Merged-chrX-98963910-2	chrX	98963399	98964399	+	814.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	26118.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	6.29	2.3	3.7	1.35	1.4	0.0	1.06	2.21	2.5
Merged-chr7-28371733-4	chr7	28371247	28372247	+	814.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001290542, exon 1 of 19)	5' UTR (NM_001290542, exon 1 of 19)	915.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	19.45	11.52	11.1	20.92	8.86	12.06	20.07	10.17	6.25
Merged-chr17-48275631-3	chr17	48275110	48276110	+	814.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172623)	TTS (NM_172623)	11315.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	51.48	40.55	38.85	41.83	32.19	65.91	68.65	84.01	50.59
Merged-chr2-25357926-3	chr2	25357442	25358442	+	814.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1610.0	NM_031843	83768.0	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	9.15	5.99	9.25	12.14	6.06	12.86	5.28	5.75	13.12
Merged-chr17-45566270-2	chr17	45565785	45566785	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357105, intron 3 of 3)	intron (NM_001357105, intron 3 of 3)	2349.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	8.01	7.37	35.15	6.75	5.13	20.09	10.56	14.59	11.24
Merged-chr9-7897760-2	chr9	7897245	7898245	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24575.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	2.86	2.76	0.0	5.4	3.73	1.61	6.34	2.65	3.75
Merged-chr17-86787973-1	chr17	86787473	86788473	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34109.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	6.86	5.07	5.55	6.07	5.6	11.25	0.0	0.44	3.12
Merged-chr16-15592334-1	chr16	15591834	15592834	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159351, intron 1 of 2)	B1F|SINE|Alu	2184.0	NM_001159351	70620.0	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	8.58	8.29	12.95	5.4	5.6	0.8	5.28	7.96	2.5
Merged-chr4-40721099-1	chr4	40720599	40721599	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_077221, exon 3 of 3)	non-coding (NR_077221, exon 3 of 3)	1218.0	NR_077221	622208.0	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	38.9	42.39	43.47	40.48	27.06	46.62	23.24	36.26	33.72
Merged-chr12-12299869-2	chr12	12299373	12300373	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	MIR|SINE|MIR	37734.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	46.34	49.3	62.9	35.09	40.12	58.68	47.53	65.44	40.59
Merged-chr17-42939667-1	chr17	42939167	42940167	+	814.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63243.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	56.63	44.24	36.07	58.7	45.72	49.83	113.01	86.66	65.58
Merged-chr4-83407950-2	chr4	83407432	83408432	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-9792.0	NR_152449	77634.0	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	8.01	7.37	12.95	11.47	3.73	11.25	4.22	5.31	2.5
Merged-chr12-85388795-1	chr12	85388295	85389295	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14078.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	54.35	58.52	62.9	62.07	48.98	62.7	60.2	55.27	24.36
Merged-chr4-103341414-1	chr4	103340914	103341914	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	27568.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	38.9	43.31	22.2	49.25	38.25	71.54	28.52	30.95	33.1
Merged-chr11-84141928-2	chr11	84141436	84142436	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12368.0	NM_172562	217031.0	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	5.72	4.61	0.0	2.7	1.87	0.0	4.22	3.54	8.74
Merged-chr9-32656999-1	chr9	32656499	32657499	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39043.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	17.73	11.52	16.65	27.66	28.92	32.96	12.67	16.36	13.74
Merged-chr14-104039055-1	chr14	104038555	104039555	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11913.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	1.72	1.84	2.77	1.35	4.2	2.41	3.17	0.88	5.0
Merged-chr15-59106099-1	chr15	59105599	59106599	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24073.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.0	3.23	3.7	2.7	3.73	1.61	1.06	2.65	5.0
Merged-chr1-157008863-2	chr1	157008353	157009353	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69227.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	92.67	73.26	47.17	153.84	98.43	49.83	46.47	62.35	38.1
Merged-chr11-51584216-1	chr11	51583716	51584716	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028398)	promoter-TSS (NM_028398)	-541.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	316.35	393.05	288.59	271.24	376.47	236.31	234.47	322.34	208.59
Merged-chr11-69654820-1	chr11	69654320	69655320	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009235)	promoter-TSS (NM_009235)	-217.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	46.91	52.53	64.75	48.58	35.45	69.13	46.47	45.99	39.97
Merged-chr2-167931588-1	chr2	167931088	167932088	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011201)	promoter-TSS (NM_011201)	-739.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	108.12	119.34	78.62	120.77	116.63	127.8	134.14	162.28	79.32
Merged-chr19-37178064-2	chr19	37177563	37178563	+	814.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045329, intron 2 of 2)	intron (NR_045329, intron 2 of 2)	-2000.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	44.05	56.22	31.45	35.76	26.59	19.29	69.71	63.23	18.74
Merged-chr1-134063917-3	chr1	134063382	134064382	+	814.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15273.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	76.66	97.69	57.35	98.51	101.7	122.18	69.71	64.56	74.32
Merged-chr15-93379442-2	chr15	93378935	93379935	+	814.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	18899.0	NM_001347097	67197.0	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	10.3	7.83	3.7	6.07	2.8	1.61	6.34	7.07	3.75
Merged-chr1-80646808-3	chr1	80646298	80647298	+	814.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	18554.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	41.76	34.56	24.97	39.13	35.45	25.72	32.74	25.65	40.59
Merged-chr7-107516881-3	chr7	107516388	107517388	+	814.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021889, intron 6 of 6)	Lx8|LINE|L1	-50545.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	2.86	3.69	1.85	4.05	5.13	0.0	4.22	1.33	5.0
Merged-chr5-19897264-3	chr5	19896762	19897762	+	814.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-10256.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	13.16	11.06	12.95	8.77	10.26	6.43	10.56	3.98	11.24
Merged-chr2-4570631-4	chr2	4570153	4571153	+	814.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	10899.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	52.63	66.81	80.47	51.28	33.59	36.97	64.43	61.02	46.84
Merged-chr18-9790610-1	chr18	9790110	9791110	+	814.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	L1_Mus2|LINE|L1	82962.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	18.88	29.03	12.02	53.98	41.52	34.56	4.22	4.42	9.99
Merged-chr10-93577694-3	chr10	93577188	93578188	+	814.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-11725.0	NR_045810	74454.0	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	3.43	1.38	1.85	0.67	1.4	1.61	4.22	6.63	1.87
Merged-chr18-10823068-3	chr18	10822549	10823549	+	814.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37497.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	12.01	14.28	9.25	16.19	9.8	23.31	10.56	13.71	8.12
Merged-chr14-46881127-3	chr14	46880624	46881624	+	814.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1841.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	28.03	17.97	22.2	27.66	11.2	9.65	33.8	19.01	26.85
Merged-chr7-96790515-1	chr7	96790015	96791015	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045874)	TTS (NR_045874)	11034.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	6.29	3.23	0.0	4.05	4.67	10.45	2.11	1.77	5.62
Merged-chr3-27275415-2	chr3	27274914	27275914	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-41663.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	24.6	35.02	19.42	31.04	21.93	18.49	24.29	29.18	28.1
Merged-chr12-33158423-3	chr12	33157914	33158914	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	10728.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	11.44	9.22	5.55	8.1	1.87	12.86	30.63	11.05	18.74
Merged-chr9-65983004-1	chr9	65982504	65983504	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173185, intron 5 of 13)	intron (NM_173185, intron 5 of 13)	73994.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	1.14	0.0	0.0	0.0	0.0	0.0	9.51	4.86	17.49
Merged-chrY-90741178-1	chrY	90740678	90741678	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13872.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.67	0.0	0.0	7.39	2.65	14.99
Merged-chr3-31412038-1	chr3	31411538	31412538	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-101719.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.86	4.15	3.7	3.37	4.67	4.82	3.17	2.65	1.25
Merged-chr8-83169907-3	chr8	83169400	83170400	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	4548.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	17.16	29.49	12.02	35.76	19.13	18.49	25.35	25.65	18.74
Merged-chr3-132084377-1	chr3	132083877	132084877	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	-915.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.43	0.46	1.85	4.05	5.6	1.61	2.11	0.0	1.25
Merged-chr10-85190142-1	chr10	85189642	85190642	+	814.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5088.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	3.43	4.15	9.25	6.07	1.4	3.22	1.06	3.1	0.0
Merged-chr8-104293517-1	chr8	104293017	104294017	+	814.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027022)	promoter-TSS (NM_027022)	-336.0	NM_027022	73381.0	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	5.15	2.3	7.4	1.35	1.4	5.63	2.11	1.77	5.62
Merged-chr18-67343424-3	chr18	67342997	67343997	+	814.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007702)	promoter-TSS (NM_007702)	-67.0	NM_007702	12683.0	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	3.43	1.38	3.7	7.42	3.27	3.22	7.39	1.77	3.12
Merged-chr10-80571054-3	chr10	80570555	80571555	+	814.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_078477, intron 1 of 1)	intron (NM_078477, intron 1 of 1)	6241.0	NM_078477	118445.0	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	36.61	17.97	27.75	18.22	16.33	21.7	16.9	13.71	19.98
Merged-chr9-35107331-3	chr9	35106851	35107851	+	814.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-9377.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	14.87	14.75	16.65	9.45	4.67	16.08	13.73	12.38	15.61
Merged-chr5-29258533-3	chr5	29258002	29259002	+	814.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020295, intron 11 of 16)	intron (NM_020295, intron 11 of 16)	62509.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	11.44	11.06	12.95	11.47	8.86	19.29	12.67	6.19	5.62
Merged-chr6-5583191-2	chr6	5582697	5583697	+	814.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86919.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	11.44	18.89	14.8	18.89	18.66	13.66	6.34	12.38	6.25
Merged-chr5-31298768-3	chr5	31298261	31299261	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144909, exon 3 of 19)	exon (NM_144909, exon 3 of 19)	1180.0	NM_144909	231103.0	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	6.29	4.15	3.7	5.4	1.87	3.22	2.11	0.44	2.5
Merged-chr5-103715179-3	chr5	103714688	103715688	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-38974.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	26.89	21.2	9.25	11.47	4.67	6.43	24.29	22.55	7.49
Merged-chr2-163516609-3	chr2	163516105	163517105	+	814.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9748.0	NM_001312907	15378.0	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	6.29	2.3	3.7	12.82	6.06	8.04	4.22	3.54	6.25
Merged-chr11-29810547-2	chr11	29810049	29811049	+	814.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 16 of 41)	intron (NM_146016, intron 16 of 41)	15119.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	28.6	30.87	6.47	44.53	30.32	18.49	28.52	31.84	8.74
Merged-chr10-60371756-3	chr10	60371238	60372238	+	814.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159572, exon 7 of 7)	3' UTR (NM_001159572, exon 7 of 7)	24887.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	28.03	27.19	22.2	33.06	31.72	45.01	42.25	26.97	17.49
Merged-chr3-103913481-3	chr3	103912970	103913970	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356556)	promoter-TSS (NM_001356556)	-650.0	NM_001356557	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	25.17	24.42	22.2	15.52	21.46	16.08	27.46	25.65	11.24
Merged-chr15-81421708-3	chr15	81421191	81422191	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177310, intron 2 of 8)	intron (NM_177310, intron 2 of 8)	-13418.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	61.21	53.91	52.72	61.4	54.11	84.4	67.6	77.82	71.2
Merged-chr9-106204636-3	chr9	106204094	106205094	+	814.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011876, intron 1 of 8)	intron (NM_011876, intron 1 of 8)	1486.0	NM_011876	23999.0	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	20.59	9.68	22.2	17.54	11.66	28.13	25.35	14.15	20.61
Merged-chrX-53713159-3	chrX	53712643	53713643	+	814.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110489, intron 5 of 6)	intron (NR_110489, intron 5 of 6)	3435.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	8.01	5.99	12.95	8.77	11.2	6.43	6.34	7.07	8.74
Merged-chr8-26980810-1	chr8	26980310	26981310	+	814.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3474.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	48.62	58.06	75.85	58.03	44.78	47.42	70.76	60.58	59.33
Merged-chr1-128593187-1	chr1	128592687	128593687	+	814.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009911)	promoter-TSS (NM_009911)	-888.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	8.01	12.9	0.0	11.47	9.8	24.92	2.11	3.98	2.5
Merged-chrUn_JH584304-45655-1	chrUn_JH584304	45155	46155	+	814.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	14034.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	27.46	22.11	0.0
Merged-chr2-101472944-2	chr2	101472444	101473444	+	814.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-151804.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	2.29	0.92	1.85	1.35	3.27	3.22	1.06	0.0	2.5
Merged-chr6-84019325-3	chr6	84018806	84019806	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021469)	promoter-TSS (NM_021469)	-80.0	NM_001310152	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	59.49	32.72	49.95	31.04	36.39	65.11	30.63	25.65	19.36
Merged-chr1-177463026-3	chr1	177462520	177463520	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1O|LTR|ERVL-MaLR	17199.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	9.15	4.61	1.85	3.37	3.27	0.0	3.17	3.54	2.5
Merged-chr11-20762224-3	chr11	20761721	20762721	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F3|LINE|L1	-20665.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	6.86	4.15	9.25	11.47	3.73	0.0	5.28	3.54	5.0
Merged-chr3-30993251-3	chr3	30992765	30993765	+	814.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2506.0	NM_008857	18759.0	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	8.01	10.6	25.9	14.84	13.53	26.53	17.96	16.36	26.85
Merged-chrX-143063137-2	chrX	143062636	143063636	+	814.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-36458.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	5.15	2.3	0.0	2.7	1.87	1.61	5.28	0.44	2.5
Merged-chr8-3441805-2	chr8	3441336	3442336	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133962, intron 9 of 19)	intron (NM_133962, intron 9 of 19)	25812.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	6.29	11.06	7.4	5.4	4.67	8.04	9.51	3.54	9.99
Merged-chr8-123860098-2	chr8	123859624	123860624	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028536)	promoter-TSS (NM_028536)	85.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	40.04	29.49	31.45	36.43	29.39	27.33	23.24	24.76	14.99
Merged-chr7-45163935-2	chr7	45163438	45164438	+	814.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182993)	promoter-TSS (NM_182993)	17.0	NM_182993	72961.0	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	2.29	0.92	0.0	4.05	0.0	0.0	4.22	0.44	1.25
Merged-chr8-120536595-3	chr8	120536111	120537111	+	814.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145896)	promoter-TSS (NM_001145896)	754.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	44.05	41.47	44.4	56.68	59.25	73.14	74.99	58.81	48.71
Merged-chr1-134560496-4	chr1	134559956	134560956	+	814.116699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_152895, exon 1 of 27)	exon (NM_152895, exon 1 of 27)	278.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	23.45	12.44	28.67	35.09	27.99	20.09	31.69	14.59	8.74
Merged-chr15-73034785-2	chr15	73034285	73035285	+	814.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164643, intron 4 of 8)	intron (NM_001164643, intron 4 of 8)	21027.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	7.44	7.83	7.4	8.77	10.26	7.23	14.79	15.03	13.74
Merged-chr5-120891273-2	chr5	120890768	120891768	+	814.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3655.0	NR_126529	23960.0	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	6.29	7.37	9.25	7.42	9.8	14.47	10.56	10.17	21.86
Merged-chr10-17775327-3	chr10	17774847	17775847	+	814.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20872.0	NM_138628	378431.0	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	22.31	19.81	22.2	34.41	30.79	26.53	44.36	51.29	33.1
Merged-chr17-13898049-3	chr17	13897566	13898566	+	814.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 31 of 33)	intron (NR_151731, intron 31 of 33)	-50307.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	10.3	12.9	5.55	17.54	9.8	8.04	9.51	8.4	3.12
Merged-chr11-89000837-5	chr11	89000292	89001292	+	814.023804	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 1 of 8)	intron (NM_009546, intron 1 of 8)	1389.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	229.97	338.68	266.39	241.55	283.64	232.29	324.25	391.76	231.08
Merged-chrX-145506054-2	chrX	145505565	145506565	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18426.0	NM_153319	27494.0	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	3.43	0.0	0.0	6.07	2.8	6.43	0.0	0.0	5.0
Merged-chr9-41185527-2	chr9	41185023	41186023	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20632.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	6.29	6.45	7.4	3.37	7.0	12.86	41.19	45.54	36.22
Merged-chr10-8135404-2	chr10	8134878	8135878	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-179255.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	4.58	3.23	2.77	7.42	0.47	3.22	19.01	7.07	16.24
Merged-chr6-120567283-1	chr6	120566783	120567783	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045733, intron 2 of 3)	intron (NR_045733, intron 2 of 3)	12487.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	53.2	42.85	40.7	44.53	41.52	41.8	48.58	40.68	59.95
Merged-chr4-141994768-1	chr4	141994268	141995268	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	11776.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	24.6	23.5	26.82	24.29	28.92	48.23	34.85	41.12	24.98
Merged-chr16-17760115-2	chr16	17759624	17760624	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145479, intron 1 of 6)	CpG	503.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	34.32	23.5	24.97	42.51	28.46	32.96	31.69	18.57	15.61
Merged-chr5-148741840-2	chr5	148741322	148742322	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028285)	promoter-TSS (NR_028285)	-18.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.0	7.83	9.25	11.47	5.6	11.25	38.02	56.6	39.97
Merged-chr5-104048078-1	chr5	104047578	104048578	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_049192)	promoter-TSS (NR_049192)	75.0	NR_049192	100885831.0		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	40.04	88.93	73.07	53.3	49.92	74.75	73.93	72.52	59.95
Merged-chr10-121466649-3	chr10	121466158	121467158	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	9592.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	24.03	19.81	12.95	19.57	14.93	33.76	14.79	25.2	14.99
Merged-chr14-118564700-3	chr14	118564193	118565193	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163676, intron 18 of 29)	intron (NM_001163676, intron 18 of 29)	27779.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	24.6	20.27	18.5	16.19	25.66	32.15	15.84	15.48	11.24
Merged-chr4-32982920-1	chr4	32982420	32983420	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027491)	promoter-TSS (NM_027491)	-78.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	10.3	8.29	1.85	35.09	16.79	8.04	11.62	6.19	1.25
Merged-chr18-57355350-1	chr18	57354850	57355850	+	814.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028447, intron 1 of 8)	intron (NM_028447, intron 1 of 8)	617.0	NM_028447	73137.0	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	156.74	135.01	99.89	176.1	120.83	108.51	148.92	89.32	58.08
Merged-chr3-15073578-1	chr3	15073078	15074078	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	102377.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	7.44	5.53	7.4	9.45	5.6	3.22	1.06	3.1	5.0
Merged-chr10-99273322-2	chr10	99272869	99273869	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10138.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	17.16	3.23	0.0	6.07	3.73	0.0	6.34	5.31	2.5
Merged-chr6-48083967-1	chr6	48083467	48084467	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362062, intron 1 of 5)	intron (NM_001362062, intron 1 of 5)	2626.0	NM_001347142	69228.0	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	5.72	6.91	3.7	10.12	4.67	16.08	9.51	10.17	7.49
Merged-chr5-130222956-2	chr5	130222467	130223467	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027854, intron 1 of 6)	B3A|SINE|B2	632.0	NM_027854	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	191.64	190.76	149.84	223.33	169.34	145.49	189.06	177.75	83.69
Merged-chr2-32966213-1	chr2	32965713	32966713	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	2912.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	162.46	170.49	98.97	182.85	196.4	130.21	210.18	178.64	60.58
Merged-chr5-113910760-1	chr5	113910260	113911260	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2054.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	34.9	35.02	40.7	46.56	27.52	62.7	30.63	16.8	19.36
Merged-chr1-34511200-3	chr1	34510705	34511705	+	814.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12793.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	10.3	5.07	21.27	10.12	6.06	10.45	5.28	4.86	6.25
Merged-chr5-63942304-1	chr5	63941804	63942804	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	26593.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	1.72	3.23	3.7	3.37	3.73	3.22	4.22	1.33	4.37
Merged-chr2-180711028-1	chr2	180710528	180711528	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289651, intron 1 of 4)	intron (NM_001289651, intron 1 of 4)	700.0	NM_001289651	76425.0	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	64.64	79.72	75.85	78.94	60.65	85.2	66.54	65.0	64.95
Merged-chr7-130547835-1	chr7	130547335	130548335	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162855)	promoter-TSS (NM_001162855)	-454.0	NM_001162855	67872.0	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	18.31	16.59	12.02	21.59	10.26	6.43	12.67	10.61	21.23
Merged-chr8-83721832-1	chr8	83721332	83722332	+	814.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_197982, exon 6 of 11)	exon (NM_197982, exon 6 of 11)	2152.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	5.15	6.91	22.2	8.1	4.2	16.08	6.34	5.31	13.12
Merged-chr15-101221819-3	chr15	101221337	101222337	+	813.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045326, exon 3 of 3)	non-coding (NR_045326, exon 3 of 3)	590.0	NR_045996	105968.0	Mm.120798	NR_045996	ENSMUSG00000115944	AU021063	-	expressed sequence AU021063	ncRNA	5.72	2.3	1.85	11.47	0.47	0.0	3.17	7.96	2.5
Merged-chr18-55408948-2	chr18	55408441	55409441	+	813.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-416350.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	38.9	46.54	36.07	33.74	28.46	36.17	12.67	16.36	17.49
Merged-chr19-47508828-3	chr19	47508328	47509328	+	813.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4154.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	17.73	11.98	14.8	29.69	16.79	25.72	16.9	6.19	1.87
Merged-chr18-54544994-3	chr18	54544500	54545500	+	813.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66744.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	10.87	4.61	4.62	6.07	8.86	4.82	6.34	3.1	5.62
Merged-chr14-31194074-3	chr14	31193568	31194568	+	813.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	intron (NM_001347583, intron 3 of 13)	12758.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	17.73	19.81	11.1	31.04	26.12	19.29	24.29	23.88	16.86
Merged-chr11-75566032-2	chr11	75565520	75566520	+	813.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	14591.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	62.93	59.44	60.12	93.11	55.05	132.63	58.09	63.67	33.1
Merged-chr4-3710574-3	chr4	3710000	3711000	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-4464.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	50.34	64.97	45.32	51.28	35.92	51.44	54.92	59.25	43.72
Merged-chr15-76195856-3	chr15	76195364	76196364	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-154.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	8.01	7.83	9.25	18.22	10.26	17.68	12.67	7.07	5.0
Merged-chr5-43872813-3	chr5	43872305	43873305	+	813.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	MLT1H-int|LTR|ERVL-MaLR	3996.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	67.5	60.82	39.77	57.35	38.25	83.59	65.48	61.02	61.2
Merged-chr12-80885501-2	chr12	80885003	80886003	+	813.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38944.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	13.16	5.07	3.7	6.07	6.06	4.82	3.17	2.21	6.25
Merged-chr19-58979993-3	chr19	58979466	58980466	+	813.8618769999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	intron (NM_175172, intron 14 of 14)	-36294.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	46.34	47.46	39.77	43.86	50.85	44.21	54.92	49.08	22.48
Merged-chr16-91441646-2	chr16	91441150	91442150	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-23454.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	26.89	17.51	18.5	26.31	23.33	12.86	39.08	38.91	16.24
Merged-chr5-130454024-2	chr5	130453517	130454517	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5225.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	7.44	6.45	12.95	10.8	5.13	7.23	3.17	13.71	3.75
Merged-chr12-44908229-2	chr12	44907722	44908722	+	813.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	166261.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.86	3.23	14.8	1.35	11.2	4.82	4.22	0.44	6.25
Merged-chr6-119358336-2	chr6	119357826	119358826	+	813.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355692, intron 6 of 7)	intron (NM_001355692, intron 6 of 7)	-27560.0	NM_172492	211187.0	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	18.31	33.64	24.05	28.34	19.59	34.56	25.35	25.2	41.22
Merged-chr11-110244899-2	chr11	110244409	110245409	+	813.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166557, intron 5 of 6)	MLT1A1|LTR|ERVL-MaLR	6867.0	NM_147218	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	5.15	5.99	3.7	9.45	3.27	0.0	0.0	0.44	5.0
Merged-chr6-55017140-3	chr6	55016657	55017657	+	813.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20844.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	12.01	7.83	12.02	14.84	19.13	20.09	14.79	7.52	14.36
Merged-chr8-79037807-1	chr8	79037307	79038307	+	813.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9370.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	10.3	2.3	11.1	15.52	5.6	21.7	6.34	8.84	3.75
Merged-chr2-128714553-1	chr2	128714053	128715053	+	813.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	15638.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	111.55	99.53	76.77	148.44	99.37	136.64	164.76	210.47	82.44
Merged-chr15-76199468-3	chr15	76198966	76199966	+	813.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201392)	promoter-TSS (NM_201392)	-60.0	NM_201392	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	11.44	4.61	14.8	20.92	8.4	10.45	13.73	4.86	5.0
Merged-chr6-121251399-3	chr6	121250909	121251909	+	813.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	5503.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	9.72	6.91	11.1	4.72	6.06	3.22	3.17	7.07	5.0
Merged-chr8-46889958-1	chr8	46889458	46890458	+	813.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96929.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	102.4	102.29	107.29	132.92	81.17	109.32	142.59	139.28	106.17
Merged-chr19-17217372-2	chr19	17216877	17217877	+	813.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	intron (NM_181348, intron 19 of 19)	122128.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	56.06	58.98	79.55	63.42	35.92	49.03	49.64	50.41	24.98
Merged-chr10-81305030-3	chr10	81304529	81305529	+	813.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293647, intron 2 of 17)	intron (NM_001293647, intron 2 of 17)	12066.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	7.44	4.15	11.1	6.07	2.8	4.02	5.28	2.21	3.12
Merged-chr3-149101241-3	chr3	149100738	149101738	+	813.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146603.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	14.3	8.29	6.47	22.27	13.06	16.08	3.17	0.44	5.0
Merged-chr10-56174010-3	chr10	56173526	56174526	+	813.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	54663.0	NM_001033385	544696.0	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|C6orf170|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	5.15	11.98	3.7	16.19	10.73	11.25	36.97	32.72	24.36
Merged-chr7-123366121-6	chr7	123365506	123366506	+	813.772217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	3909.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	41.19	45.16	47.17	45.21	28.92	36.97	35.91	43.77	29.98
Merged-chr3-69223746-1	chr3	69223246	69224246	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027843)	TTS (NM_027843)	1327.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	28.6	38.25	27.75	19.57	17.26	40.19	38.02	35.82	14.99
Merged-chr13-55437406-2	chr13	55436914	55437914	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	-7658.0	NM_001286063	26385.0	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	14.3	10.14	18.5	9.45	11.2	31.35	38.02	34.05	17.49
Merged-chr13-59975990-1	chr13	59975490	59976490	+	813.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53721.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	1.14	3.69	3.7	14.17	28.46	24.11	3.17	4.86	5.62
Merged-chr4-58304054-2	chr4	58303552	58304552	+	813.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18090.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	11.44	7.37	11.1	6.75	2.8	8.04	1.06	0.88	1.25
Merged-chr11-118254338-3	chr11	118253848	118254848	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5756.0	NM_011180	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	23.45	20.74	5.55	24.96	14.0	20.9	13.73	19.46	8.74
Merged-chr17-57338224-3	chr17	57337728	57338728	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20458.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	106.97	142.84	35.15	85.69	62.51	44.21	72.88	101.26	60.58
Merged-chr7-63822169-3	chr7	63821692	63822692	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94665.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	8.58	3.23	9.25	8.77	7.46	9.65	4.22	2.65	0.0
Merged-chr11-121848077-3	chr11	121847576	121848576	+	813.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17858.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	4.58	6.91	16.65	10.8	5.13	3.22	6.34	11.94	7.49
Merged-chr7-105581377-3	chr7	105580875	105581875	+	813.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001253886, exon 1 of 14)	5' UTR (NM_001253886, exon 1 of 14)	116.0	NM_001253885	11785.0	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	2.29	4.61	5.55	6.75	0.0	0.0	5.28	1.33	7.49
Merged-chr8-46340990-3	chr8	46340453	46341453	+	813.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46282.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	6.86	5.53	0.0	10.8	2.33	0.0	2.11	2.65	1.87
Merged-chr3-79253162-3	chr3	79252644	79253644	+	813.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	40225.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	30.89	21.66	25.9	17.54	21.46	21.7	91.89	95.95	46.22
Merged-chr10-78139861-3	chr10	78139341	78140341	+	813.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29927.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	21.17	8.29	14.8	28.34	8.4	12.06	17.96	3.98	1.87
Merged-chr19-5072117-3	chr19	5071601	5072601	+	813.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4023.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	10.3	6.45	9.25	10.12	3.73	3.22	17.96	9.73	7.49
Merged-chr8-80793947-1	chr8	80793447	80794447	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021356, intron 2 of 9)	intron (NM_021356, intron 2 of 9)	-54488.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	21.17	12.44	25.9	14.17	12.6	20.09	8.45	8.84	3.75
Merged-chr18-4337290-1	chr18	4336790	4337790	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	15663.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	56.06	63.13	46.25	58.03	55.51	74.75	83.44	75.61	49.96
Merged-chr16-73646483-3	chr16	73645983	73646983	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	695584.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	13.16	15.21	7.4	29.69	26.12	30.54	29.57	23.88	19.36
Merged-chr12-87416836-3	chr12	87416329	87417329	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20928.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	9.15	11.06	5.55	13.49	5.6	8.04	11.62	6.63	7.49
Merged-chr9-45197248-3	chr9	45196739	45197739	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1473.0	NM_001198971	408059.0	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	SMIM35	cDNA sequence BC049352	protein-coding	17.73	9.22	15.72	16.19	7.93	13.66	8.45	0.88	7.49
Merged-chr2-73004508-3	chr2	73003983	73004983	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24037.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	12.01	9.68	2.77	22.94	19.13	21.7	13.73	30.51	17.49
Merged-chr9-65741142-1	chr9	65740642	65741642	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	64594.0	NM_001301307	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	97.25	69.12	61.97	77.59	69.98	94.04	5.28	6.19	5.62
Merged-chrX-140511236-3	chrX	140510738	140511738	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31430.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	34.9	41.93	25.9	39.81	37.32	49.03	15.84	30.51	32.48
Merged-chr8-19563330-1	chr8	19562830	19563830	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68233.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	4.58	6.91	10.17	11.47	7.0	7.23	7.39	9.29	3.12
Merged-chr14-103920371-3	chr14	103919872	103920872	+	813.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75896.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.01	5.07	0.0	5.4	5.6	3.22	5.28	7.07	2.5
Merged-chr14-7858545-1	chr14	7858045	7859045	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	40588.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	1.14	3.69	1.85	4.72	6.06	4.02	2.11	0.0	1.25
Merged-chr12-3744192-1	chr12	3743692	3744692	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-62788.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	32.61	34.56	31.45	35.09	30.32	41.8	33.8	36.26	25.61
Merged-chr6-124316160-1	chr6	124315660	124316660	+	813.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 6 of 16)	intron (NM_001170395, intron 6 of 16)	11509.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	19.45	16.13	11.1	24.96	16.79	32.15	20.07	6.19	23.11
Merged-chr11-63898912-3	chr11	63898389	63899389	+	813.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	23395.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	36.61	37.78	61.05	20.92	15.39	25.72	38.02	32.28	48.71
Merged-chr5-123661774-2	chr5	123661272	123662272	+	813.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	PB1D7|SINE|Alu	22589.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	48.05	51.61	37.0	132.92	62.05	49.03	82.38	70.75	33.1
Merged-chr10-121494048-4	chr10	121493530	121494530	+	813.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17780.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	36.04	34.56	44.4	54.65	38.25	46.62	42.25	32.28	29.98
Merged-chr16-21689349-3	chr16	21688847	21689847	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	ORR1D2|LTR|ERVL-MaLR	5318.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	24.03	14.75	16.65	30.36	24.26	26.53	27.46	30.07	12.49
Merged-chr3-37728298-3	chr3	37727779	37728779	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3919.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	52.63	61.28	22.2	13.49	10.26	4.02	0.0	3.98	6.87
Merged-chr13-30566969-3	chr13	30566471	30567471	+	813.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21655.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	7.44	5.07	1.85	2.02	0.0	3.22	2.11	1.77	3.75
Merged-chr5-105685078-3	chr5	105684585	105685585	+	813.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14884.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	28.03	13.82	10.17	23.62	20.06	2.41	11.62	5.75	6.87
Merged-chr1-51915838-2	chr1	51915295	51916295	+	813.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001161817, exon 1 of 31)	5' UTR (NM_001161817, exon 1 of 31)	183.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	8.01	1.84	2.77	3.37	3.73	5.63	1.06	4.86	3.75
Merged-chr7-81868258-2	chr7	81867762	81868762	+	813.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291282, intron 3 of 9)	intron (NM_001291282, intron 3 of 9)	5575.0	NM_001291282	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	7.44	11.06	11.1	6.07	5.13	8.04	2.11	3.1	6.25
Merged-chr15-96476561-2	chr15	96476079	96477079	+	813.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15736.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	4.0	3.69	0.92	5.4	5.6	3.22	5.28	0.44	2.5
Merged-chr11-97801189-3	chr11	97800695	97801695	+	813.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	1630.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	36.61	21.66	34.22	44.53	33.12	49.83	58.09	54.39	21.23
Merged-chr2-52982728-3	chr2	52982218	52983218	+	813.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	(T)n|Simple_repeat|Simple_repeat	124850.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	21.17	11.98	11.1	10.12	9.33	12.86	20.07	18.13	16.86
Merged-chr6-72438025-4	chr6	72437574	72438574	+	813.5625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046011)	promoter-TSS (NR_046011)	-609.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	48.62	37.78	27.75	45.88	24.72	34.56	48.58	61.9	31.23
Merged-chr15-39606685-3	chr15	39606182	39607182	+	813.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 21 of 26)	intron (NM_053271, intron 21 of 26)	-52829.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	9.15	5.99	0.0	7.42	14.93	6.43	8.45	2.65	0.0
Merged-chr17-29006999-2	chr17	29006499	29007499	+	813.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357173, intron 1 of 13)	intron (NM_001357173, intron 1 of 13)	996.0	NM_134115	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	60.64	77.87	66.6	62.75	77.91	84.4	96.11	96.39	62.45
Merged-chr2-120446594-2	chr2	120446095	120447095	+	813.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172672, intron 17 of 23)	intron (NM_172672, intron 17 of 23)	-16998.0	NM_001177799	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	28.03	12.44	18.5	28.34	22.86	11.25	22.18	15.48	12.49
Merged-chr10-44448273-3	chr10	44447777	44448777	+	813.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007548, intron 3 of 6)	intron (NM_007548, intron 3 of 6)	10471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	29.75	34.1	40.7	47.9	29.39	36.17	45.42	29.63	38.72
Merged-chr15-27673250-3	chr15	27672729	27673729	+	813.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	8313.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	55.49	41.93	52.72	56.68	43.85	47.42	40.14	42.45	28.73
Merged-chr5-28003971-3	chr5	28003464	28004464	+	813.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-67448.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	11.44	24.88	15.72	21.59	31.26	32.15	24.29	18.13	4.37
Merged-chr6-89455595-2	chr6	89455136	89456136	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-93023.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	8.58	6.91	0.0	5.4	5.13	8.04	8.45	2.65	1.87
Merged-chr16-30596397-2	chr16	30595915	30596915	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie5|DNA|hAT-Charlie	-3308.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	18.31	8.29	4.62	12.82	7.93	6.43	27.46	14.59	12.49
Merged-chr10-122047217-1	chr10	122046717	122047717	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001242411)	promoter-TSS (NM_001242411)	98.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	8.01	0.46	5.55	12.82	6.06	4.82	5.28	0.88	1.25
Merged-chr1-64243356-2	chr1	64242854	64243854	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-121965.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	8.58	4.61	6.47	4.05	1.87	12.06	4.22	4.86	6.25
Merged-chr9-94275174-2	chr9	94274662	94275662	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	262919.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	1.72	8.75	12.02	1.35	7.46	0.0	2.11	3.98	3.12
Merged-chr2-160619502-2	chr2	160619021	160620021	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26376.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	109.83	144.23	81.4	118.75	140.89	112.53	138.36	157.85	73.69
Merged-chr1-176849036-4	chr1	176848507	176849507	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-12874.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	45.19	51.61	53.65	43.86	47.58	43.4	50.7	68.09	33.72
Merged-chr1-60609598-1	chr1	60609098	60610098	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42833.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	11.44	14.75	12.95	18.89	24.26	20.9	11.62	12.38	11.24
Merged-chr13-47151255-1	chr13	47150755	47151755	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	BLACKJACK|DNA|hAT-Blackjack	-2585.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	2.86	1.38	1.85	8.1	3.73	3.22	2.11	0.0	5.0
Merged-chr9-111055100-2	chr9	111054582	111055582	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001302376, exon 3 of 3)	3' UTR (NM_001302376, exon 3 of 3)	2162.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.01	6.45	2.77	10.12	2.33	4.82	10.56	2.21	3.75
Merged-chrX-85863192-1	chrX	85862692	85863692	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7081.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	20.59	19.35	14.8	19.57	8.86	23.31	21.12	15.92	19.98
Merged-chr8-22708720-2	chr8	22708219	22709219	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-2136.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	19.45	16.13	3.7	6.07	13.53	11.25	15.84	11.94	13.74
Merged-chr18-4634964-3	chr18	4634524	4635524	+	813.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081963)	promoter-TSS (NM_001081963)	95.0	NM_001081963	240185.0	Mm.33179	NM_001081963	ENSMUSG00000033960	Jcad	1110056P05Rik|9430020K01Rik|Gm328|mKIAA1462	junctional cadherin 5 associated	protein-coding	5.15	1.84	3.7	9.45	3.27	8.04	5.28	0.0	1.25
Merged-chr11-86625597-1	chr11	86625097	86626097	+	813.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	-41439.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	67.5	89.39	55.5	103.23	71.38	92.44	123.57	145.92	69.32
Merged-chr17-73038671-3	chr17	73038115	73039115	+	813.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-69370.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	36.61	38.25	37.92	48.58	43.39	23.31	69.71	54.83	28.1
Merged-chr15-103183406-3	chr15	103182905	103183905	+	813.438904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20121.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	7.44	3.23	1.85	4.72	0.47	3.22	4.22	0.88	6.25
Merged-chr8-71612030-3	chr8	71611526	71612526	+	813.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146211, intron 1 of 11)	intron (NM_146211, intron 1 of 11)	1002.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	219.1	219.79	120.24	250.99	212.73	166.38	285.17	334.72	122.41
Merged-chr7-55707008-2	chr7	55706514	55707514	+	813.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61170.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	5.72	3.23	3.7	6.07	4.67	6.43	4.22	3.1	5.0
Merged-chr2-33427234-3	chr2	33426734	33427734	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276332, intron 1 of 1)	MIRb|SINE|MIR	4090.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	12.59	11.98	23.12	39.81	26.59	5.63	27.46	28.3	24.98
Merged-chr2-14224556-3	chr2	14224045	14225045	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-4869.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	12.01	3.69	0.0	18.22	3.27	8.04	8.45	2.21	5.0
Merged-chr15-75873821-3	chr15	75873320	75874320	+	813.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	11481.0	NM_026960	69146.0	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	5.72	7.83	11.1	4.05	3.73	3.22	1.06	3.98	3.75
Merged-chr14-103011895-2	chr14	103011323	103012323	+	813.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	L1MA6|LINE|L1	21980.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	4.58	3.23	0.0	4.72	2.8	1.61	13.73	3.54	0.62
Merged-chr12-102414633-2	chr12	102414130	102415130	+	813.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	25183.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	24.03	18.89	24.97	38.46	24.26	28.94	13.73	19.01	13.12
Merged-chr3-152913136-4	chr3	152912706	152913706	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	69001.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	29.75	23.96	26.82	39.81	42.45	46.62	70.76	84.45	24.36
Merged-chr15-58750229-3	chr15	58749714	58750714	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73213.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	19.45	6.91	9.25	23.62	5.13	12.86	27.46	9.73	6.87
Merged-chr4-81694632-3	chr4	81694167	81695167	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207654.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	21.17	24.42	12.02	18.22	20.06	42.6	17.96	17.24	21.86
Merged-chr3-95986510-3	chr3	95986008	95987008	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045872, exon 3 of 3)	non-coding (NR_045872, exon 3 of 3)	998.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	112.69	133.17	135.97	109.3	132.95	143.88	193.28	200.3	116.16
Merged-chr9-38719135-3	chr9	38718608	38719608	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145957, intron 1 of 18)	intron (NM_001145957, intron 1 of 18)	840.0	NM_172767	67776.0	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	38.9	48.84	30.52	41.83	41.52	27.33	49.64	58.81	19.98
Merged-chr19-7581297-3	chr19	7580799	7581799	+	813.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	23814.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	24.03	41.01	38.85	23.62	23.33	45.82	29.57	30.07	29.98
Merged-chr9-120068905-1	chr9	120068405	120069405	+	813.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009987)	promoter-TSS (NM_009987)	-609.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	47.48	22.12	48.1	57.35	33.59	40.99	10.56	19.9	2.5
Merged-chr18-79995828-3	chr18	79995312	79996312	+	813.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-51083.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	8.01	9.22	19.42	18.89	10.26	19.29	9.51	3.54	8.12
Merged-chr5-114897542-3	chr5	114897071	114898071	+	813.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011854, exon 1 of 6)	5' UTR (NM_011854, exon 1 of 6)	637.0	NM_001359181	23962.0	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	29.17	44.24	40.7	22.27	23.33	21.7	50.7	65.0	26.85
Merged-chr16-95703380-2	chr16	95702899	95703899	+	813.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	intron (NM_011809, intron 1 of 9)	992.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	144.16	166.8	80.47	120.1	158.15	75.56	175.33	157.85	86.81
Merged-chr3-109335680-3	chr3	109335192	109336192	+	813.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-4991.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	8.01	6.45	7.4	1.35	4.2	8.04	8.45	2.21	3.75
Merged-chr17-64201822-3	chr17	64201330	64202330	+	813.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130053.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	5.15	4.15	5.55	4.72	7.0	8.84	3.17	2.21	6.25
Merged-chr15-100664137-3	chr15	100663632	100664632	+	813.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	5368.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	22.88	20.27	33.3	23.62	21.46	30.54	20.07	12.38	26.23
Merged-chr1-162739514-3	chr1	162739014	162740014	+	813.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1042.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	111.55	158.51	123.94	107.28	110.56	102.08	115.12	156.09	109.92
Merged-chr9-22322483-1	chr9	22321983	22322983	+	813.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8207.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	4.58	12.9	5.55	6.75	13.06	2.41	21.12	20.34	15.61
Merged-chr5-90661643-3	chr5	90661132	90662132	+	813.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-21105.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	14.3	3.69	0.0	5.4	4.2	6.43	7.39	2.21	5.0
Merged-chr9-119093600-3	chr9	119093072	119094072	+	813.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_121571)	promoter-TSS (NR_121571)	-70.0	NM_019676	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	8.58	0.92	5.55	5.4	2.8	2.41	5.28	2.65	4.37
Merged-chr8-24437934-2	chr8	24437430	24438430	+	813.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	1016.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	24.6	35.94	8.32	29.01	42.92	35.37	41.19	64.11	43.09
Merged-chr12-55652939-2	chr12	55652439	55653439	+	813.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003719, intron 36 of 39)	intron (NM_001003719, intron 36 of 39)	54022.0	NM_020287	56856.0	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	14.87	18.89	23.12	12.82	14.46	30.54	17.96	12.38	12.49
Merged-chr2-72286555-2	chr2	72286046	72287046	+	813.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	845.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	162.46	189.84	93.42	149.79	121.76	112.53	157.37	148.13	57.46
Merged-chr16-45738110-3	chr16	45737607	45738607	+	813.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073572, intron 1 of 4)	intron (NR_073572, intron 1 of 4)	4848.0	NM_001272070	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	5.72	6.45	9.25	4.72	9.33	17.68	1.06	2.21	9.99
Merged-chr6-33884316-2	chr6	33883807	33884807	+	813.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 14 of 17)	intron (NM_009148, intron 14 of 17)	-145141.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	15.45	12.44	5.55	20.92	7.46	17.68	12.67	9.29	18.74
Merged-chr15-76817040-3	chr15	76816470	76817470	+	813.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	1200.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	62.93	61.75	42.55	94.46	64.84	82.79	54.92	41.56	28.73
Merged-chr17-35059778-3	chr17	35059257	35060257	+	813.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016765, intron 1 of 6)	intron (NM_016765, intron 1 of 6)	722.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	15.45	4.61	7.4	9.45	3.73	5.63	11.62	5.75	10.62
Merged-chr3-65396981-2	chr3	65396472	65397472	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4419.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	27.46	45.62	27.75	30.36	32.19	29.74	28.52	25.65	29.35
Merged-chr12-85575018-3	chr12	85574520	85575520	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-24085.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	34.9	23.5	22.2	21.59	14.93	20.9	27.46	24.76	23.11
Merged-chr6-22122236-1	chr6	22121736	22122736	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081351, intron 8 of 21)	intron (NM_001081351, intron 8 of 21)	136326.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	1.72	1.38	1.85	2.7	2.8	4.82	2.11	3.54	1.25
Merged-chr1-54921768-1	chr1	54921268	54922268	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	4619.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	24.6	25.34	9.25	27.66	22.39	28.13	27.46	20.78	15.61
Merged-chrX-140534528-1	chrX	140534028	140535028	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8140.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	5.72	1.38	3.7	7.42	0.93	3.22	2.11	0.0	3.75
Merged-chr14-78815654-2	chr14	78815115	78816115	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33563.0	NM_027906	219189.0	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	1.14	4.61	0.92	2.02	2.8	0.0	0.0	1.77	3.75
Merged-chr18-5616850-1	chr18	5616350	5617350	+	813.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360981, intron 2 of 8)	L1MA8|LINE|L1	24203.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	1.72	4.61	0.92	6.75	5.6	1.61	8.45	2.65	5.62
Merged-chr18-65534184-1	chr18	65533684	65534684	+	813.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-46046.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	2.29	1.38	3.7	5.4	1.87	4.02	5.28	6.19	11.24
Merged-chr4-130798535-1	chr4	130798035	130799035	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5998.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	157.89	137.77	152.62	160.58	106.36	187.28	226.02	194.11	113.66
Merged-chr9-62360867-3	chr9	62360372	62361372	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CT-rich|Low_complexity|Low_complexity	19529.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	17.73	11.06	22.2	14.84	7.93	12.86	16.9	11.05	7.49
Merged-chr19-55934836-2	chr19	55934351	55935351	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39530.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.58	1.84	11.1	2.7	1.87	7.23	6.34	0.88	5.0
Merged-chr9-118696313-1	chr9	118695813	118696813	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 14 of 27)	intron (NM_133721, intron 14 of 27)	-15379.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	6.86	9.22	17.57	10.8	9.8	16.88	11.62	5.31	13.74
Merged-chr12-108793766-1	chr12	108793266	108794266	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009537, exon 1 of 5)	exon (NM_009537, exon 1 of 5)	455.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	213.38	176.48	222.91	189.6	176.34	199.34	178.5	167.58	199.22
Merged-chr3-90016863-1	chr3	90016363	90017363	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165987, intron 17 of 24)	intron (NM_001165987, intron 17 of 24)	-5653.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	44.05	54.37	38.85	33.74	32.66	8.04	53.87	31.84	29.98
Merged-chr19-32255125-1	chr19	32254625	32255625	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-44112.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	4.58	5.99	1.85	6.07	27.99	16.08	11.62	1.77	5.0
Merged-chr4-66826493-2	chr4	66825987	66826987	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1064.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	47.48	43.31	24.05	47.23	39.65	20.9	36.97	33.6	10.62
Merged-chr15-95962640-1	chr15	95962140	95963140	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 17 of 19)	intron (NM_175344, intron 17 of 19)	116913.0	NR_126493	402773.0	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	26.89	22.12	15.72	22.94	19.59	24.11	10.56	15.03	9.99
Merged-chr10-67585087-2	chr10	67584586	67585586	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-13127.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	13.16	5.53	6.47	11.47	12.6	8.04	10.56	6.19	2.5
Merged-chrX-60387110-1	chrX	60386610	60387610	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	7382.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	13.73	14.75	14.8	7.42	4.2	12.86	13.73	8.4	8.74
Merged-chr15-38672461-1	chr15	38671961	38672961	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	10557.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	12.59	17.51	31.45	22.27	20.99	12.86	20.07	18.13	26.85
Merged-chr11-4118768-2	chr11	4118247	4119247	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144520)	promoter-TSS (NM_144520)	-18.0	NM_144520	67815.0	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	4.0	2.3	1.85	4.05	3.73	3.22	0.0	0.88	1.25
Merged-chr9-43239907-2	chr9	43239364	43240364	+	813.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178644)	promoter-TSS (NM_178644)	-48.0	NM_178644	102644.0	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	20.59	13.82	18.5	26.99	13.06	22.51	9.51	3.98	2.5
Merged-chr1-60658642-1	chr1	60658142	60659142	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-87746.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	17.73	15.67	12.02	23.62	12.6	20.09	29.57	17.24	9.99
Merged-chr7-132237777-1	chr7	132237277	132238277	+	813.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360768, exon 8 of 8)	3' UTR (NM_001360768, exon 8 of 8)	-77887.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	16.02	11.98	18.5	17.54	18.66	35.37	11.62	16.8	16.86
Merged-chr8-90954917-3	chr8	90954439	90955439	+	812.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	22690.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	32.04	53.45	29.6	21.59	19.59	28.94	47.53	49.08	32.48
Merged-chr7-89342155-3	chr7	89341659	89342659	+	812.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	ORR1C2|LTR|ERVL-MaLR	-3372.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	20.59	11.98	14.8	9.45	20.06	15.27	34.85	19.9	18.74
Merged-chr3-100932401-2	chr3	100931887	100932887	+	812.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001165953, exon 7 of 7)	3' UTR (NM_001165953, exon 7 of 7)	9894.0	NM_001165953	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.57	2.76	5.55	6.07	2.8	8.04	1.06	1.33	3.12
Merged-chr2-3050254-3	chr2	3049751	3050751	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A1|LTR|ERVL-MaLR	-63973.0	NM_001310434	269233.0	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	20.59	19.35	15.72	10.8	27.99	13.66	6.34	31.39	24.98
Merged-chr13-109343741-3	chr13	109343247	109344247	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	19003.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.86	3.69	5.55	1.35	4.2	4.82	5.28	1.33	1.25
Merged-chr12-55465718-3	chr12	55465226	55466226	+	812.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26921.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	29.17	47.46	14.8	41.16	42.92	53.85	47.53	42.01	24.36
Merged-chr9-47628744-3	chr9	47628255	47629255	+	812.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	98403.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	90.38	104.6	72.15	101.88	88.17	85.2	117.24	149.89	56.21
Merged-chr4-6445274-3	chr4	6444777	6445777	+	812.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	8994.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	28.6	20.74	7.4	10.12	10.26	8.84	10.56	16.8	6.87
Merged-chr1-33901889-3	chr1	33901391	33902391	+	812.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	Lx9|LINE|L1	5730.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	67.5	77.41	80.47	30.36	33.59	53.05	29.57	21.67	41.84
Merged-chr7-100520893-3	chr7	100520388	100521388	+	812.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6073.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	2.86	3.69	1.85	5.4	3.27	3.22	8.45	7.96	2.5
Merged-chr15-79933942-3	chr15	79933449	79934449	+	812.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1303.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	9.15	4.15	6.47	6.07	3.27	6.43	12.67	3.1	6.25
Merged-chr13-52194633-3	chr13	52194123	52195123	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	97882.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	25.17	8.29	19.42	22.94	13.53	11.25	14.79	10.17	19.98
Merged-chr9-15126187-1	chr9	15125687	15126687	+	812.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-14079.0	NM_001164797	244698.0	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	9.72	4.61	1.85	2.7	2.8	14.47	5.28	2.65	5.62
Merged-chr18-46465458-3	chr18	46464949	46465949	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045438, exon 1 of 1)	non-coding (NR_045438, exon 1 of 1)	367.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	5.15	3.69	5.55	8.1	4.2	5.63	9.51	5.75	3.75
Merged-chr16-25022750-3	chr16	25022253	25023253	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36886.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	29.75	21.2	24.05	39.81	26.12	34.56	16.9	32.72	17.49
Merged-chr4-15289077-3	chr4	15288593	15289593	+	812.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23273.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	12.59	4.61	11.1	7.42	7.46	12.86	9.51	7.07	8.12
Merged-chr13-98027967-1	chr13	98027467	98028467	+	812.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	178198.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	4.0	2.3	2.77	10.8	7.0	6.43	4.22	0.88	1.25
Merged-chr2-27680705-2	chr2	27680197	27681197	+	812.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	3496.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	93.82	92.62	85.1	126.17	102.17	121.37	101.39	95.07	79.32
Merged-chr5-121923638-1	chr5	121923138	121924138	+	812.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 3 of 22)	ID_B1|SINE|B4	74641.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	3.43	3.69	5.55	5.4	6.06	3.22	3.17	1.33	3.75
Merged-chr11-63955187-1	chr11	63954687	63955687	+	812.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9039.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.57	2.3	1.85	16.19	5.6	8.04	1.06	0.44	0.0
Merged-chrX-152172582-3	chrX	152172099	152173099	+	812.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114664, intron 2 of 14)	intron (NM_001114664, intron 2 of 14)	-6410.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	12.59	8.29	5.55	6.07	10.26	20.09	5.28	3.1	9.99
Merged-chr19-43723642-3	chr19	43723146	43724146	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 9 of 12)	(TG)n|Simple_repeat|Simple_repeat	29354.0	NM_144874	226139.0	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	8.58	2.3	1.85	14.17	6.53	4.82	15.84	10.61	6.25
Merged-chr9-86583906-3	chr9	86583392	86584392	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 13 of 13)	intron (NM_008615, intron 13 of 13)	11839.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	8.01	5.07	3.7	5.4	0.93	3.22	6.34	1.33	6.25
Merged-chr5-127607768-3	chr5	127607251	127608251	+	812.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133895, intron 2 of 7)	intron (NM_133895, intron 2 of 7)	9641.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	37.18	41.47	65.67	45.21	42.92	36.17	57.03	54.83	47.46
Merged-chr15-78369106-2	chr15	78368605	78369605	+	812.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19664.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	3.43	2.76	0.0	8.77	4.67	3.22	4.22	1.77	2.5
Merged-chr1-20454862-1	chr1	20454362	20455362	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	98408.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	1.72	4.61	3.7	4.72	5.6	5.63	7.39	3.98	8.74
Merged-chr11-46106045-3	chr11	46105545	46106545	+	812.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291890, intron 5 of 22)	intron (NM_001291890, intron 5 of 22)	3775.0	NR_106177	102465996.0		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	5.15	3.69	0.0	4.05	2.33	4.82	4.22	2.21	6.25
Merged-chr18-68935260-1	chr18	68934760	68935760	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	16268.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	6.86	3.69	3.7	8.1	2.8	4.82	2.11	0.88	0.0
Merged-chr11-62556381-1	chr11	62555881	62556881	+	812.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	4650.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	16.02	12.9	9.25	14.17	9.8	16.88	19.01	6.19	13.74
Merged-chr5-43391891-2	chr5	43391433	43392433	+	812.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123636.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	2.86	3.69	3.7	8.77	1.87	4.82	13.73	0.88	5.62
Merged-chr5-125405863-6	chr5	125405376	125406376	+	812.613892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15859.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	93.82	161.27	89.72	115.38	125.02	97.26	178.5	202.07	106.79
Merged-chr16-38442905-3	chr16	38442405	38443405	+	812.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9760.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	14.3	9.68	4.62	14.17	7.93	11.25	13.73	9.73	14.36
Merged-chr16-23311898-2	chr16	23311396	23312396	+	812.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L2|LINE|L2	21426.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	20.02	14.75	11.1	32.39	14.46	28.13	17.96	17.24	31.23
Merged-chr3-16086739-2	chr3	16086235	16087235	+	812.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80403.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	8.01	5.99	0.0	3.37	4.67	0.0	2.11	3.54	3.75
Merged-chr4-72253768-2	chr4	72253272	72254272	+	812.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	52528.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	2.86	3.69	9.25	2.7	1.87	4.82	4.22	7.07	2.5
Merged-chr19-56530442-2	chr19	56529957	56530957	+	812.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153440, intron 9 of 9)	intron (NR_153440, intron 9 of 9)	17665.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	12.01	8.75	11.1	18.22	18.66	10.45	0.0	0.0	7.49
Merged-chr3-144617223-3	chr3	144616729	144617729	+	812.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46802.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	6.29	3.69	1.85	8.77	5.13	8.84	9.51	7.52	0.0
Merged-chr16-44087793-2	chr16	44087300	44088300	+	812.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358203, intron 14 of 14)	intron (NM_001358203, intron 14 of 14)	-45792.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	8.01	6.45	12.02	6.75	6.06	4.82	9.51	10.17	5.0
Merged-chr4-137730308-3	chr4	137729803	137730803	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001331215)	TTS (NM_001331215)	5842.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	1.14	2.76	5.55	2.02	1.4	1.61	0.0	2.21	1.25
Merged-chr19-42026359-3	chr19	42025858	42026858	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-9680.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	21.17	9.68	8.32	8.1	4.67	12.86	12.67	14.59	9.99
Merged-chr1-33906252-3	chr1	33905750	33906750	+	812.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	1371.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	124.71	145.61	92.5	30.36	27.06	41.8	34.85	38.03	26.85
Merged-chr12-76522234-3	chr12	76521730	76522730	+	812.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	10982.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	10.87	10.14	29.6	10.8	12.6	27.33	15.84	15.03	18.74
Merged-chr6-89364584-2	chr6	89364084	89365084	+	812.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1971.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	4.0	2.3	8.32	8.77	1.87	8.04	1.06	2.21	6.25
Merged-chr9-100489117-2	chr9	100488620	100489620	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2647.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	12.01	13.36	6.47	20.24	10.73	16.08	7.39	3.54	5.0
Merged-chr7-90476857-1	chr7	90476357	90477357	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026734)	promoter-TSS (NM_026734)	-862.0	NM_026734	68472.0	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	35.47	24.42	24.97	26.31	36.85	32.96	25.35	28.74	9.99
Merged-chr11-69877055-3	chr11	69876557	69877557	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195710, intron 4 of 6)	intron (NM_001195710, intron 4 of 6)	961.0	NM_001195710	100503361.0	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	9.15	3.69	3.7	7.42	3.27	4.82	4.22	3.1	7.49
Merged-chr3-59055059-2	chr3	59054556	59055556	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	46765.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	2.86	0.92	11.1	5.4	2.33	3.22	1.06	0.88	10.62
Merged-chr1-16231559-4	chr1	16231001	16232001	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	125619.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	22.88	48.38	40.7	35.76	46.65	40.99	32.74	34.49	25.61
Merged-chr7-5062850-2	chr7	5062379	5063379	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	736.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	266.0	199.06	209.96	213.21	204.33	186.48	245.04	241.42	130.53
Merged-chr3-68732133-1	chr3	68731633	68732633	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29362.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.86	2.76	3.7	4.05	7.93	3.22	0.0	1.33	3.75
Merged-chr16-87575864-1	chr16	87575364	87576364	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144854, intron 3 of 4)	intron (NM_144854, intron 3 of 4)	22534.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	1.72	0.92	1.85	6.75	0.47	6.43	2.11	0.44	4.37
Merged-chr19-7307216-2	chr19	7306709	7307709	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-11762.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	4.58	5.99	7.4	6.75	2.8	16.08	3.17	2.21	9.99
Merged-chr9-124275646-1	chr9	124275146	124276146	+	812.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	37048.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	22.88	36.86	16.65	35.09	32.19	32.96	72.88	74.73	30.6
Merged-chr9-59585001-3	chr9	59584496	59585496	+	812.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175235, intron 2 of 11)	intron (NM_175235, intron 2 of 11)	-4292.0	NM_001361099	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	4.0	2.3	0.0	5.4	4.2	0.0	2.11	0.88	2.5
Merged-chr17-5610171-1	chr17	5609671	5610671	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	117571.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	5.15	1.38	3.7	8.77	6.06	6.43	7.39	1.33	1.25
Merged-chr18-4333818-1	chr18	4333318	4334318	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007746, exon 7 of 8)	exon (NM_007746, exon 7 of 8)	19135.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	15.45	11.98	24.05	12.82	13.06	29.74	12.67	13.71	24.36
Merged-chr15-67124910-2	chr15	67124419	67125419	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 3 of 8)	MIRc|SINE|MIR	51963.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	3.43	5.07	4.62	12.14	7.0	12.86	6.34	4.86	5.0
Merged-chr14-33243466-2	chr14	33242971	33243971	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	26648.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	4.0	8.29	1.85	14.17	6.06	10.45	2.11	5.75	3.12
Merged-chr19-34685053-1	chr19	34684553	34685553	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	44164.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	1.72	2.3	8.32	2.02	0.47	8.04	2.11	2.21	0.0
Merged-chr1-64318132-1	chr1	64317632	64318632	+	812.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196743.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	36.61	35.02	12.95	49.93	38.25	36.97	31.69	21.67	9.99
Merged-chr11-119238306-5	chr11	119237788	119238788	+	812.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175430, intron 6 of 18)	(TTTG)n|Simple_repeat|Simple_repeat	9716.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	41.19	37.32	15.72	58.7	35.45	30.54	42.25	36.7	22.48
Merged-chr19-5797760-3	chr19	5797229	5798229	+	812.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-1748.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	116.7	47.92	40.7	74.22	36.85	27.33	61.26	38.47	25.61
Merged-chr12-8502622-3	chr12	8502106	8503106	+	812.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2597.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	77.23	135.47	88.8	90.41	155.35	108.51	94.0	161.83	84.31
Merged-chr13-31806510-3	chr13	31806002	31807002	+	812.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008592)	promoter-TSS (NM_008592)	-144.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	2.86	1.84	1.85	4.05	0.0	0.0	5.28	0.0	1.25
Merged-chr7-29179501-3	chr7	29179008	29180008	+	812.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026545, intron 1 of 6)	intron (NM_026545, intron 1 of 6)	1165.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	50.34	37.32	15.72	47.23	27.99	10.45	98.23	87.55	33.1
Merged-chr3-10292792-3	chr3	10292316	10293316	+	812.4277950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	8367.0	NM_001357159	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	10.3	7.83	6.47	10.8	8.4	2.41	9.51	7.52	5.0
Merged-chr4-133493953-3	chr4	133493464	133494464	+	812.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081156, intron 1 of 1)	intron (NM_001081156, intron 1 of 1)	4586.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	122.42	79.72	42.55	122.8	71.84	125.39	72.88	94.62	79.94
Merged-chr12-31921229-3	chr12	31920703	31921703	+	812.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163126, intron 21 of 22)	intron (NM_001163126, intron 21 of 22)	29042.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	16.59	13.36	10.17	10.12	5.13	20.09	34.85	32.28	26.85
Merged-chr7-135669539-2	chr7	135669056	135670056	+	812.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 9 of 17)	intron (NM_001316681, intron 9 of 17)	-17242.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	9.72	1.84	1.85	9.45	2.33	8.04	2.11	0.0	5.62
Merged-chr1-17097942-2	chr1	17097440	17098440	+	812.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020604)	promoter-TSS (NM_020604)	-51.0	NM_020604	57339.0	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	JP-1|Jp1	junctophilin 1	protein-coding	1.72	0.0	0.0	4.05	0.0	8.04	3.17	1.33	2.5
Merged-chr1-133685961-3	chr1	133685465	133686465	+	812.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159649, intron 2 of 5)	intron (NM_001159649, intron 2 of 5)	4051.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	14.87	9.68	7.4	16.87	14.93	11.25	8.45	1.77	3.75
Merged-chr6-58661170-3	chr6	58660671	58661671	+	812.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355477, intron 2 of 15)	intron (NM_001355477, intron 2 of 15)	64499.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	5.15	2.3	0.0	3.37	2.8	11.25	3.17	3.98	1.25
Merged-chr15-102224672-3	chr15	102224182	102225182	+	812.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013566, exon 3 of 15)	exon (NM_013566, exon 3 of 15)	7253.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	9.72	4.15	19.42	10.8	5.6	4.82	6.34	5.31	6.25
Merged-chr12-30597131-3	chr12	30596618	30597618	+	812.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12675.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	4.58	3.69	2.77	4.72	1.4	7.23	1.06	0.0	2.5
Merged-chr1-92976699-5	chr1	92976181	92977181	+	812.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271766, intron 1 of 1)	intron (NM_001271766, intron 1 of 1)	1334.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	34.9	34.56	44.4	33.74	31.26	46.62	45.42	30.51	26.23
Merged-chr16-33988558-2	chr16	33988052	33989052	+	812.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 55 of 59)	intron (NM_177357, intron 55 of 59)	-21514.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.43	2.76	0.0	5.4	0.47	0.0	3.17	1.33	1.25
Merged-chr3-36854229-3	chr3	36853714	36854714	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8892.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	8.01	15.21	7.4	45.88	41.52	21.7	23.24	11.5	8.74
Merged-chr9-90271660-3	chr9	90271163	90272163	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194334)	promoter-TSS (NM_194334)	-894.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	75.51	70.96	59.2	78.27	38.25	53.85	117.24	91.97	99.3
Merged-chr17-13440860-1	chr17	13440360	13441360	+	812.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80596.0	NR_030763	272667.0	Mm.444718	NR_030763	ENSMUSG00000079711	Smok4a	4930513D10Rik|Smok2c	sperm motility kinase 4A	pseudo	3.43	0.92	0.0	10.8	10.73	8.84	1.06	0.44	1.25
Merged-chr8-125278461-1	chr8	125277961	125278961	+	812.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	214372.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.58	5.07	5.55	10.12	8.86	20.09	3.17	2.21	3.75
Merged-chr5-21295845-3	chr5	21295348	21296348	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 17 of 18)	intron (NM_029195, intron 17 of 18)	-76825.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	6.29	5.07	7.4	13.49	11.66	4.82	7.39	7.07	4.37
Merged-chr11-106742396-3	chr11	106741875	106742875	+	812.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-8851.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	65.21	75.11	50.87	72.19	33.59	48.23	59.15	50.85	39.35
Merged-chr13-56135000-2	chr13	56134532	56135532	+	812.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159513, intron 1 of 8)	CpG	518.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	172.19	118.42	119.32	150.46	95.63	114.94	191.17	83.57	89.31
Merged-chr18-34196078-2	chr18	34195563	34196563	+	812.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24921.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	6.29	7.83	7.4	5.4	9.8	11.25	12.67	10.61	17.49
Merged-chrX-99199230-3	chrX	99198750	99199750	+	812.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63189.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	13.16	11.52	14.8	16.87	13.53	23.31	19.01	8.84	6.25
Merged-chr4-82867313-3	chr4	82866822	82867822	+	812.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7649.0	NM_026647	68268.0	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	9.15	5.53	11.1	6.07	4.67	8.04	8.45	4.42	3.75
Merged-chr2-71039874-3	chr2	71039369	71040369	+	812.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	15737.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	19.45	14.75	12.95	19.57	19.13	24.92	16.9	33.6	22.48
Merged-chr9-66939029-3	chr9	66938541	66939541	+	812.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7045.0	NM_001311101	67941.0	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	6.86	6.45	5.55	8.1	3.27	9.65	8.45	2.65	2.5
Merged-chr2-25422753-2	chr2	25422184	25423184	+	812.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289453)	promoter-TSS (NM_001289453)	-558.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	36.61	25.8	63.82	55.33	31.72	76.36	63.37	46.43	26.85
Merged-chr8-35850567-3	chr8	35850044	35851044	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23985.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	6.29	2.76	3.7	2.7	0.93	3.22	8.45	8.84	6.25
Merged-chr14-25475011-3	chr14	25474505	25475505	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	15820.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	117.27	127.64	123.02	150.46	152.08	121.37	158.43	126.46	63.08
Merged-chr13-46168930-3	chr13	46168430	46169430	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104791.0	NM_001005422	380842.0	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	5.72	6.45	4.62	6.07	5.6	3.22	11.62	4.42	5.62
Merged-chr4-19873800-3	chr4	19873292	19874292	+	812.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48774.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	85.24	123.49	103.59	151.14	160.95	117.35	119.35	126.9	57.46
Merged-chr11-94404818-2	chr11	94404304	94405304	+	812.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11828.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	6.29	3.23	3.7	21.59	10.26	14.47	12.67	3.1	2.5
Merged-chr4-99368252-3	chr4	99367765	99368765	+	812.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	174118.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	12.59	9.22	13.87	18.89	13.53	8.04	33.8	20.34	18.74
Merged-chr10-75676450-2	chr10	75675950	75676950	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 29 of 36)	MIR3|SINE|MIR	-32442.0	NM_027890	71733.0	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	154.45	182.47	83.25	120.1	129.69	149.5	103.51	129.55	68.7
Merged-chr1-24481788-2	chr1	24481288	24482288	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	105649.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	6.29	5.07	1.85	8.77	2.8	10.45	12.67	11.5	1.25
Merged-chr2-153338508-2	chr2	153338010	153339010	+	812.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7300.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	27.46	27.19	28.67	33.74	42.92	41.8	19.01	10.61	13.12
Merged-chr16-43580594-2	chr16	43580095	43581095	+	812.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-60060.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	1.72	2.3	1.85	5.4	2.33	1.61	3.17	2.65	1.25
Merged-chr1-138210809-2	chr1	138210322	138211322	+	812.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35517.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	12.01	3.69	11.1	12.82	6.53	12.86	14.79	3.1	5.0
Merged-chr19-4228499-3	chr19	4228011	4229011	+	812.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-3382.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	8.01	5.99	1.85	7.42	1.4	3.22	4.22	2.21	1.25
Merged-chr5-142818876-3	chr5	142818347	142819347	+	812.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1460.0	NM_001122730	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	54.92	122.57	80.47	57.35	55.05	98.87	104.56	124.69	123.03
Merged-chr1-155058731-3	chr1	155058218	155059218	+	812.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24546.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	41.76	35.02	37.0	32.39	31.26	34.56	31.69	32.28	21.86
Merged-chr17-29842421-3	chr17	29841923	29842923	+	812.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081160, intron 8 of 15)	intron (NM_001081160, intron 8 of 15)	45459.0	NM_001081160	74762.0	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	29.17	31.79	30.52	52.63	48.52	40.19	28.52	39.35	14.99
Merged-chr5-33954571-3	chr5	33954064	33955064	+	812.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46|LTR|ERVK	-18306.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	5.15	4.61	2.77	2.7	1.87	4.82	4.22	3.54	6.25
Merged-chr4-151981537-3	chr4	151981040	151982040	+	812.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172704, exon 16 of 16)	3' UTR (NM_172704, exon 16 of 16)	7446.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	8.01	5.07	3.7	4.05	2.8	11.25	2.11	1.33	4.37
Merged-chr15-84979481-3	chr15	84978967	84979967	+	812.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	8504.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	18.31	23.04	18.5	16.87	20.53	23.31	28.52	24.32	18.11
Merged-chr6-115523165-2	chr6	115522646	115523646	+	812.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21558.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	3.43	5.99	4.62	7.42	7.0	7.23	2.11	3.1	3.75
Merged-chr7-7300720-3	chr7	7300222	7301222	+	812.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126157, exon 1 of 3)	non-coding (NR_126157, exon 1 of 3)	129.0	NR_126157	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	6.86	3.23	1.85	4.72	2.33	1.61	47.53	14.59	10.62
Merged-chr18-79993494-3	chr18	79993015	79994015	+	812.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53380.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	46.34	61.75	51.8	60.72	46.18	47.42	63.37	83.13	43.09
Merged-chr9-14846889-3	chr9	14846393	14847393	+	812.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13317.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.0	5.53	5.55	6.75	7.93	18.49	8.45	3.98	7.49
Merged-chr12-86803872-3	chr12	86803371	86804371	+	812.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	69502.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	15.45	5.07	7.4	13.49	3.27	9.65	19.01	6.63	9.37
Merged-chr4-141404979-3	chr4	141404466	141405466	+	812.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019701, intron 18 of 19)	intron (NM_019701, intron 18 of 19)	-6260.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	8.58	2.3	0.0	5.4	1.4	0.0	3.17	1.33	3.75
Merged-chr16-78264819-1	chr16	78264319	78265319	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-9365.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	57.78	52.99	27.75	86.36	88.64	52.25	87.66	93.74	24.98
Merged-chr18-3010342-1	chr18	3009842	3010842	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113070.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	4.0	11.06	6.47	10.8	9.8	9.65	1.06	4.42	19.98
Merged-chr13-36557531-1	chr13	36557031	36558031	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176946.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.72	2.3	0.0	3.37	3.73	4.82	5.28	3.54	6.87
Merged-chr14-54913101-1	chr14	54912601	54913601	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360406)	promoter-TSS (NM_001360406)	31.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	7.44	10.6	11.1	9.45	14.0	24.11	16.9	10.61	13.12
Merged-chr15-38620428-1	chr15	38619928	38620928	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-25494.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	6.29	2.76	5.55	4.05	3.73	1.61	6.34	1.77	4.37
Merged-chr19-41777007-1	chr19	41776507	41777507	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027667, intron 9 of 11)	L1MB2|LINE|L1	25077.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	14.87	17.51	13.87	12.14	13.53	22.51	80.27	109.66	62.45
Merged-chr8-104115746-1	chr8	104115246	104116246	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	B3|SINE|B2	-9873.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	28.6	42.39	31.45	20.92	22.86	63.5	59.15	77.38	43.09
Merged-chr2-57108528-1	chr2	57108028	57109028	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001139509, intron 7 of 7)	intron (NM_001139509, intron 7 of 7)	6510.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	2.29	2.76	5.55	4.05	0.47	8.84	1.06	2.21	6.25
Merged-chr18-39100936-1	chr18	39100436	39101436	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 3 of 21)	intron (NM_001361073, intron 3 of 21)	107791.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.86	1.38	2.77	1.35	1.87	0.8	3.17	1.33	2.5
Merged-chr18-54916048-1	chr18	54915548	54916548	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	74132.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	8.01	8.29	5.55	2.7	3.27	5.63	9.51	6.63	6.25
Merged-chr10-93376945-1	chr10	93376445	93377445	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40734.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	26.31	23.96	15.72	34.41	29.39	28.94	2.11	3.98	3.75
Merged-chr4-3954194-1	chr4	3953694	3954694	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14770.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	18.88	18.43	19.42	18.22	18.66	12.06	24.29	27.41	11.24
Merged-chr8-70562942-3	chr8	70562432	70563432	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	23257.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	10.87	7.37	16.65	55.33	22.39	16.88	16.9	5.75	2.5
Merged-chr6-22423608-2	chr6	22423149	22424149	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67568.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	16.02	7.37	9.25	18.89	7.0	10.45	14.79	7.96	6.25
Merged-chr17-15583248-2	chr17	15582762	15583762	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19939.0	NM_144809	213389.0	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	1.72	2.76	5.55	2.02	2.8	3.22	3.17	1.33	8.74
Merged-chr1-54832815-1	chr1	54832315	54833315	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	(GGGA)n|Simple_repeat|Simple_repeat	93572.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	3.43	5.53	1.85	5.4	2.33	6.43	6.34	1.33	3.75
Merged-chr6-99521415-1	chr6	99520915	99521915	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347345)	promoter-TSS (NM_001347345)	-422.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	16.59	14.75	14.8	25.64	14.46	19.29	22.18	22.99	15.61
Merged-chr1-84218081-1	chr1	84217581	84218581	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_105771)	TTS (NR_105771)	880.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	18.88	18.43	22.2	15.52	12.13	20.09	6.34	9.73	8.74
Merged-chr2-131142805-2	chr2	131142307	131143307	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028306, intron 10 of 12)	intron (NM_028306, intron 10 of 12)	15395.0	NM_028306	72630.0	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	1.14	1.84	3.7	4.72	0.47	1.61	1.06	0.0	5.0
Merged-chr3-152461656-1	chr3	152461156	152462156	+	812.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346655, exon 13 of 13)	3' UTR (NM_001346655, exon 13 of 13)	64972.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	1.72	0.46	11.1	7.42	1.87	4.02	14.79	14.15	5.0
Merged-chr8-91377029-3	chr8	91376528	91377528	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	63503.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	22.31	13.36	26.82	13.49	14.46	14.47	20.07	11.05	14.36
Merged-chr14-105736511-3	chr14	105736000	105737000	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112730.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	26.31	20.74	18.5	19.57	23.33	30.54	12.67	21.67	11.87
Merged-chr14-73227329-1	chr14	73226829	73227829	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	-10562.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	13.73	5.99	10.17	8.77	5.13	9.65	13.73	12.38	11.87
Merged-chr3-21941710-1	chr3	21941210	21942210	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-134942.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.15	1.38	2.77	4.72	6.06	1.61	6.34	1.77	3.75
Merged-chr10-125386825-2	chr10	125386327	125387327	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57864.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	41.76	27.65	24.05	28.34	18.66	38.58	22.18	13.27	21.23
Merged-chr17-43518860-3	chr17	43518380	43519380	+	812.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-16107.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	9.72	5.07	0.0	2.02	6.53	6.43	3.17	2.65	5.0
Merged-chr11-86099504-1	chr11	86099004	86100004	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-75154.0	NR_046030	629393.0	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	9.15	21.2	4.62	16.87	10.26	11.25	12.67	5.75	6.25
Merged-chr19-25547444-1	chr19	25546944	25547944	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015826, intron 3 of 4)	intron (NM_015826, intron 3 of 4)	41738.0	NM_015826	50796.0	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	2.29	2.76	2.77	2.02	2.8	10.45	8.45	7.52	4.37
Merged-chr17-42860567-1	chr17	42860067	42861067	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	15857.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	14.87	18.43	15.72	12.82	14.0	24.11	25.35	14.15	16.24
Merged-chr2-93841540-1	chr2	93841040	93842040	+	812.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183220, intron 7 of 14)	intron (NM_183220, intron 7 of 14)	8259.0	NM_183220	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	5.15	1.84	5.55	6.75	3.73	8.04	4.22	0.88	4.37
Merged-chr8-124896910-3	chr8	124896452	124897452	+	811.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	753.0	NM_198103	102058.0	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	26.31	15.67	31.45	34.41	27.52	37.78	31.69	18.57	24.36
Merged-chr2-174171275-3	chr2	174170780	174171780	+	811.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040530, intron 1 of 3)	Lx8|LINE|L1	12638.0	NR_040530	100038374.0	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	-	predicted gene 10714	ncRNA	5.72	1.84	7.4	5.4	4.67	4.82	7.39	3.98	3.75
Merged-chr6-56569151-3	chr6	56568638	56569638	+	811.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135561.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.29	2.3	5.55	3.37	2.8	4.82	2.11	2.21	6.25
Merged-chr17-24173588-3	chr17	24173098	24174098	+	811.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3920.0	NM_001361531	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	18.88	20.74	1.85	23.62	5.6	15.27	15.84	19.01	17.49
Merged-chr15-6337250-3	chr15	6336757	6337757	+	811.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37468.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	37.18	40.55	24.05	48.58	49.92	32.15	33.8	38.03	29.35
Merged-chr18-60982743-3	chr18	60982241	60983241	+	811.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	19187.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	10.87	7.83	18.5	4.05	2.8	5.63	19.01	12.82	5.0
Merged-chr4-95905403-3	chr4	95904910	95905910	+	811.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	61625.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.15	7.83	2.77	4.05	7.93	3.22	7.39	7.07	5.62
Merged-chr1-190170741-2	chr1	190170232	190171232	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008937)	promoter-TSS (NM_008937)	95.0	NM_008937	19130.0	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik|PROX-1	prospero homeobox 1	protein-coding	15.45	11.98	3.7	26.31	16.79	22.51	9.51	3.54	8.74
Merged-chr1-121135848-2	chr1	121135338	121136338	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	48433.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	5.15	4.61	9.25	6.07	3.27	4.02	9.51	3.1	1.25
Merged-chr8-84554632-2	chr8	84554099	84555099	+	811.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 17 of 47)	intron (NM_001252060, intron 17 of 47)	108253.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.43	2.76	9.25	6.07	3.27	8.04	4.22	0.0	2.5
Merged-chr3-142497428-2	chr3	142496936	142497936	+	811.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	502.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	79.52	86.63	70.3	68.15	66.24	69.13	82.38	84.45	45.59
Merged-chr11-22759911-3	chr11	22759400	22760400	+	811.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	99835.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	6.86	1.84	5.55	4.05	4.2	1.61	3.17	0.88	6.25
Merged-chr8-3330900-3	chr8	3330368	3331368	+	811.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22547.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	7.44	0.92	0.0	1.35	3.73	1.61	2.11	0.88	2.5
Merged-chr11-34770698-3	chr11	34770182	34771182	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033374, intron 1 of 51)	intron (NM_033374, intron 1 of 51)	13223.0	NM_033374	94176.0	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	58.92	70.96	61.05	40.48	46.65	60.28	53.87	57.92	34.97
Merged-chr17-50394138-3	chr17	50393655	50394655	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100535.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	46.34	35.94	46.25	33.74	14.93	24.11	71.82	47.75	24.36
Merged-chr16-56028644-3	chr16	56028148	56029148	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356449, intron 1 of 5)	intron (NM_001356449, intron 1 of 5)	1069.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	137.86	110.59	50.87	86.36	84.44	61.89	113.01	87.55	62.45
Merged-chr3-132033986-3	chr3	132033495	132034495	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51297.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	22.31	12.9	9.25	14.84	11.66	14.47	10.56	8.84	9.99
Merged-chr4-47080438-3	chr4	47079950	47080950	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-11503.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	9.15	8.75	11.1	14.17	8.4	14.47	13.73	7.52	8.12
Merged-chr16-11652845-3	chr16	11652358	11653358	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 16 of 20)	intron (NM_028964, intron 16 of 20)	-126844.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	19.45	22.12	14.8	9.45	18.19	3.22	26.4	18.57	17.49
Merged-chr16-55832235-3	chr16	55831752	55832752	+	811.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	intron (NM_030612, intron 2 of 13)	6389.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	4.58	8.75	13.87	15.52	4.67	8.04	3.17	7.52	5.0
Merged-chr7-98717661-1	chr7	98717161	98718161	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028410, exon 5 of 5)	3' UTR (NM_028410, exon 5 of 5)	14414.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	23.45	15.21	9.25	32.39	34.06	17.68	22.18	14.59	7.49
Merged-chr3-133755108-2	chr3	133754619	133755619	+	811.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-210729.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	2.86	5.07	5.55	2.02	2.8	14.47	1.06	5.75	1.25
Merged-chr6-85154929-1	chr6	85154429	85155429	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17165.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	3.43	3.23	7.4	5.4	4.2	4.82	5.28	5.31	3.75
Merged-chr14-31413404-2	chr14	31412901	31413901	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	4276.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	53.77	80.64	74.0	83.66	58.78	80.38	86.61	95.95	57.46
Merged-chr4-136309929-1	chr4	136309429	136310429	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-1013.0	NM_001277122	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	16.59	13.82	9.25	12.14	7.46	11.25	13.73	18.13	12.49
Merged-chr10-100839671-2	chr10	100839184	100840184	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98049.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	62.35	62.67	24.05	58.7	44.32	28.13	123.57	107.0	41.22
Merged-chr10-26753308-1	chr10	26752808	26753808	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19204.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	9.15	6.45	5.55	14.84	9.33	12.86	4.22	3.1	1.87
Merged-chr11-3291025-1	chr11	3290525	3291525	+	811.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001253691, exon 1 of 5)	exon (NM_001253691, exon 1 of 5)	568.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	12.01	11.98	4.62	23.62	15.39	8.04	11.62	3.1	4.37
Merged-chr7-101051936-3	chr7	101051414	101052414	+	811.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39861.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	11.44	11.52	8.32	32.39	15.86	14.47	11.62	7.52	8.74
Merged-chr18-39446117-3	chr18	39445622	39446622	+	811.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	41123.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.58	17.05	12.95	18.22	15.39	24.92	24.29	24.32	21.86
Merged-chr2-173224237-3	chr2	173223709	173224709	+	811.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022995)	TTS (NM_022995)	-5287.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	6.29	2.76	0.0	8.77	3.73	7.23	12.67	8.4	8.12
Merged-chr1-84148056-3	chr1	84147559	84148559	+	811.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	70902.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	5.72	11.06	5.55	12.14	12.6	10.45	3.17	2.65	4.37
Merged-chr13-85430226-3	chr13	85429723	85430723	+	811.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140737.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	2.86	3.23	3.7	8.1	7.93	9.65	4.22	3.98	1.25
Merged-chr6-115361675-2	chr6	115361171	115362171	+	811.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	527.0	NM_001308352	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	88.67	54.83	46.25	99.18	94.7	49.83	94.0	61.9	21.23
Merged-chr8-8477686-1	chr8	8477186	8478186	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	183087.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.14	3.69	3.7	8.77	7.0	0.8	4.22	5.75	2.5
Merged-chr7-98103475-1	chr7	98102975	98103975	+	811.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 3 of 48)	intron (NM_008663, intron 3 of 48)	5773.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	1.72	3.69	1.85	4.05	3.27	0.0	40.14	20.78	11.24
Merged-chr12-75595622-3	chr12	75595105	75596105	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012024, intron 1 of 13)	CpG	595.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	39.47	34.56	60.12	49.25	48.52	61.89	62.31	48.2	28.73
Merged-chr18-17733874-1	chr18	17733374	17734374	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-152884.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.0	8.75	4.62	3.37	6.06	8.04	6.34	0.88	6.87
Merged-chr18-11866341-1	chr18	11865841	11866841	+	811.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	ORR1A3-int|LTR|ERVL-MaLR	-25903.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	8.58	6.45	3.7	11.47	3.27	11.25	2.11	3.1	2.5
Merged-chr7-80846961-3	chr7	80846471	80847471	+	811.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31C_MM|LTR|ERVK	-15137.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	63.5	58.98	28.67	64.77	50.85	73.14	89.78	105.24	63.08
Merged-chr2-5706751-3	chr2	5706253	5707253	+	811.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	8009.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	33.18	41.01	54.57	43.18	29.39	53.05	47.53	38.47	16.24
Merged-chr10-88426649-2	chr10	88426137	88427137	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 7 of 20)	intron (NM_001004164, intron 7 of 20)	-32950.0	NM_011517	20962.0	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	6.29	3.69	1.85	4.05	7.0	1.61	6.34	3.54	3.75
Merged-chr17-26530951-2	chr17	26530453	26531453	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22481.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	57.21	42.39	18.5	64.1	55.98	44.21	59.15	33.6	28.1
Merged-chr2-156547652-2	chr2	156547155	156548155	+	811.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164818)	promoter-TSS (NM_001164818)	79.0	NM_001164818	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	96.68	76.03	24.05	93.11	105.43	110.92	133.08	99.05	54.33
Merged-chr13-38037966-2	chr13	38037473	38038473	+	811.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024242, intron 1 of 16)	intron (NM_024242, intron 1 of 16)	984.0	NM_024242	71340.0	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1	protein-coding	60.07	58.98	21.27	68.15	57.85	34.56	80.27	87.11	21.86
Merged-chr7-65704978-3	chr7	65704480	65705480	+	811.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11563.0	NM_026795	68634.0	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	14.87	6.91	15.72	4.72	8.4	6.43	12.67	9.29	3.75
Merged-chr14-15065378-3	chr14	15064868	15065868	+	811.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	244553.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	17.16	13.36	23.12	17.54	13.53	11.25	30.63	26.97	24.98
Merged-chr19-29496371-2	chr19	29495876	29496876	+	811.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25611.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	38.33	47.92	51.8	65.45	68.58	68.32	92.94	90.64	28.1
Merged-chr10-118102199-3	chr10	118101703	118102703	+	811.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39584.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	94.96	88.93	49.02	114.7	56.91	89.22	117.24	89.76	63.08
Merged-chr19-6481611-3	chr19	6481122	6482122	+	811.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 10 of 22)	intron (NM_001205234, intron 10 of 22)	61448.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	29.17	10.6	7.4	16.19	4.2	11.25	7.39	3.1	2.5
Merged-chr1-165589351-3	chr1	165588871	165589871	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45170.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	9.15	7.83	12.95	18.89	19.13	15.27	10.56	4.86	8.74
Merged-chr4-33292958-1	chr4	33292458	33293458	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17353.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	10.3	3.23	2.77	2.02	1.87	0.8	1.06	3.98	5.0
Merged-chr16-33879681-1	chr16	33879181	33880181	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 4 of 14)	L1MEd|LINE|L1	50016.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	29.17	29.03	29.6	23.62	31.26	23.31	31.69	9.29	16.86
Merged-chrX-167180273-5	chrX	167179755	167180755	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28963.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	53.2	50.23	34.22	45.21	27.99	38.58	40.14	49.08	42.47
Merged-chr2-24104092-2	chr2	24103581	24104581	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-7486.0	NR_110359	227606.0	Mm.301625	NM_199059	ENSMUSG00000061809	Tbpl2	Gm348|Trf3	TATA box binding protein like 2	protein-coding	1.14	0.92	0.0	2.7	6.06	8.04	5.28	2.21	2.5
Merged-chr9-63933244-1	chr9	63932744	63933744	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88815.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.57	2.76	8.32	10.8	3.27	1.61	4.22	0.0	3.75
Merged-chr4-58968202-1	chr4	58967702	58968702	+	811.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025968, intron 9 of 9)	intron (NM_025968, intron 9 of 9)	18876.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.57	4.61	0.0	2.7	3.27	0.8	2.11	4.42	3.75
Merged-chr2-59642857-1	chr2	59642357	59643357	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	-3912.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	7.44	9.68	11.1	7.42	1.4	1.61	3.17	3.98	2.5
Merged-chr7-91457385-2	chr7	91456877	91457877	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366591.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.57	3.23	0.0	2.7	3.73	3.22	2.11	4.42	1.87
Merged-chr11-22653182-2	chr11	22652695	22653695	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	140912.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	29.75	29.95	17.57	36.43	34.06	23.31	40.14	42.89	26.23
Merged-chr13-63250211-1	chr13	63249711	63250711	+	811.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	10182.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	9.72	7.37	3.7	10.8	6.06	9.65	5.28	7.96	8.74
Merged-chr11-16977789-2	chr11	16977285	16978285	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	ORR1G|LTR|ERVL-MaLR	26375.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	73.79	56.22	49.95	57.35	49.45	45.82	36.97	30.51	31.23
Merged-chr11-78262789-2	chr11	78262282	78263282	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001002004, exon 2 of 39)	exon (NM_001002004, exon 2 of 39)	1028.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	54.92	65.89	52.72	39.13	39.19	54.66	46.47	77.82	49.96
Merged-chr19-53825042-2	chr19	53824551	53825551	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 5 of 13)	intron (NM_001170847, intron 5 of 13)	-67180.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.58	5.53	12.02	1.35	1.4	1.61	13.73	31.39	18.74
Merged-chr12-52625241-2	chr12	52624740	52625740	+	811.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-22918.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	16.02	10.14	6.47	6.75	11.2	8.04	11.62	18.13	18.74
Merged-chr19-4230607-3	chr19	4230116	4231116	+	811.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132308, intron 2 of 3)	intron (NR_132308, intron 2 of 3)	-1277.0	NM_027196	69745.0	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	75.51	70.5	34.22	72.19	61.58	86.81	55.98	63.23	52.46
Merged-chr7-141025603-3	chr7	141025062	141026062	+	811.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8670.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	58.35	58.52	71.22	56.68	41.05	83.59	99.28	99.05	57.46
Merged-chr10-93332368-2	chr10	93331883	93332883	+	811.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-3828.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	10.87	9.22	13.87	6.75	7.0	22.51	3.17	0.88	9.37
Merged-chr2-11205180-2	chr2	11204664	11205664	+	811.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	MTD|LTR|ERVL-MaLR	32782.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.72	4.15	12.95	2.7	5.6	6.43	10.56	9.29	6.25
Merged-chr15-62044890-3	chr15	62044386	62045386	+	811.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	5629.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	96.11	125.79	79.55	80.29	82.57	69.93	176.38	228.6	74.94
Merged-chr14-79522550-3	chr14	79522033	79523033	+	811.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	6859.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	77.23	76.03	41.62	87.04	83.97	90.02	70.76	68.98	44.97
Merged-chrX-167382767-3	chrX	167382267	167383267	+	811.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026662)	promoter-TSS (NM_026662)	-18.0	NM_001313758	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	23.45	20.27	12.95	17.54	23.79	20.09	16.9	19.46	16.24
Merged-chr16-35817461-2	chr16	35816977	35817977	+	811.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152314, intron 6 of 8)	intron (NR_152314, intron 6 of 8)	47091.0	NM_175111	66667.0	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	2.29	5.53	0.92	1.35	3.27	3.22	2.11	3.1	4.37
Merged-chr19-28678251-3	chr19	28677665	28678665	+	811.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045330)	promoter-TSS (NR_045330)	-59.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	32.61	26.26	17.57	70.85	54.58	57.87	25.35	19.46	9.99
Merged-chr14-32683403-2	chr14	32682902	32683902	+	811.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195097, intron 1 of 3)	intron (NM_001195097, intron 1 of 3)	1870.0	NM_001195097	100504518.0	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	Cefip	RIKEN cDNA 3425401B19 gene	protein-coding	5.15	5.99	3.7	9.45	2.33	4.82	8.45	0.0	5.62
Merged-chr7-4813562-2	chr7	4813091	4814091	+	811.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-1251.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	88.1	94.92	62.9	155.86	202.93	89.22	158.43	206.49	62.45
Merged-chr5-64769473-3	chr5	64768972	64769972	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34051.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	31.46	29.49	19.42	30.36	28.46	36.97	32.74	30.07	11.24
Merged-chr12-34225011-1	chr12	34224511	34225511	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 19 of 27)	intron (NM_001271386, intron 19 of 27)	267340.0	NM_011658	22160.0	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	9.15	6.45	5.55	11.47	2.8	0.0	1.06	1.33	0.0
Merged-chr11-62248848-3	chr11	62248428	62249428	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	-56.0	NM_007413	11541.0	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	4.58	2.76	0.0	2.02	2.8	14.47	2.11	7.52	3.75
Merged-chr16-97444043-3	chr16	97443554	97444554	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18851.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	1.72	2.3	1.85	0.67	5.13	4.82	2.11	3.54	0.0
Merged-chr3-37139353-2	chr3	37138862	37139862	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13408.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	10.3	12.44	12.95	14.84	13.53	40.19	9.51	8.84	7.49
Merged-chr5-4877390-1	chr5	4876890	4877890	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 14 of 14)	intron (NM_011074, intron 14 of 14)	-119174.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	9.15	7.37	9.25	20.92	19.13	17.68	13.73	14.15	18.11
Merged-chr2-16228322-1	chr2	16227822	16228822	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 37 of 38)	intron (NM_001310455, intron 37 of 38)	-127982.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	6.29	1.84	0.0	5.4	4.67	10.45	7.39	9.73	7.49
Merged-chr2-102531206-1	chr2	102530706	102531706	+	811.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18815.0	NM_173749	210622.0	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	3.43	3.23	3.7	0.67	2.33	1.61	5.28	0.88	6.25
Merged-chr1-173809466-3	chr1	173808952	173809952	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-42533.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	5.72	10.6	5.55	21.59	8.4	16.08	6.34	5.31	5.0
Merged-chr19-28777065-3	chr19	28776558	28777558	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58108.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	17.16	14.28	14.8	12.82	9.33	14.47	16.9	13.71	8.74
Merged-chr4-101349641-3	chr4	101349158	101350158	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040708, intron 1 of 1)	intron (NR_040708, intron 1 of 1)	-2631.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	5.15	13.82	11.1	13.49	7.93	4.02	15.84	8.84	5.0
Merged-chr2-5033918-4	chr2	5033495	5034495	+	811.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 9 of 13)	intron (NM_001356487, intron 9 of 13)	-21204.0	NM_027290	70024.0	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	73.79	51.15	34.22	51.95	29.86	39.39	115.12	99.93	44.97
Merged-chrX-167172402-1	chrX	167171902	167172902	+	811.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36816.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	17.73	14.28	19.42	20.92	14.46	20.9	26.4	15.48	16.86
Merged-chr10-14328365-3	chr10	14327874	14328874	+	811.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	216662.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.58	2.3	3.7	3.37	0.47	3.22	4.22	1.33	3.75
Merged-chr1-138822473-2	chr1	138821971	138822971	+	811.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	19973.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.0	0.92	3.7	4.72	2.8	1.61	3.17	0.88	5.0
Merged-chr14-101516255-1	chr14	101515755	101516755	+	811.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	92936.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	30.89	22.58	7.4	62.75	33.59	23.31	24.29	23.88	11.87
Merged-chr3-19011650-2	chr3	19011146	19012146	+	811.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	151449.0	NM_028840	74252.0	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	2.29	2.3	4.62	0.67	3.27	4.82	6.34	8.4	14.36
Merged-chr18-4239678-3	chr18	4239177	4240177	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73845.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	9.15	31.33	13.87	23.62	16.79	18.49	39.08	21.67	26.23
Merged-chr4-116827980-3	chr4	116827479	116828479	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6471.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	4.0	2.76	0.0	8.1	4.2	5.63	2.11	4.42	2.5
Merged-chr3-97876268-3	chr3	97875770	97876770	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	12437.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	18.88	11.06	9.25	13.49	5.13	6.43	11.62	6.63	6.25
Merged-chr1-171038098-3	chr1	171037619	171038619	+	811.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19193.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	193.93	191.69	78.62	153.84	122.23	83.59	142.59	194.55	76.82
Merged-chr11-55158999-3	chr11	55158512	55159512	+	811.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153170, exon 10 of 10)	3' UTR (NM_153170, exon 10 of 10)	-7306.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	2.86	5.99	1.85	4.05	6.53	6.43	2.11	2.65	3.75
Merged-chr14-73106494-3	chr14	73105935	73106935	+	811.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36075.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	11.44	7.83	0.0	10.12	10.26	19.29	9.51	9.29	12.49
Merged-chr19-43525254-1	chr19	43524754	43525754	+	811.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010324)	promoter-TSS (NM_010324)	-649.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	124.71	91.7	62.9	141.02	109.63	71.54	153.15	152.55	96.18
Merged-chr6-88065294-3	chr6	88064781	88065781	+	811.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19192.0	NM_133933	103963.0	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	4.0	5.07	5.55	9.45	4.67	7.23	10.56	4.86	8.74
Merged-chr10-93961457-2	chr10	93960957	93961957	+	811.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001304572)	TTS (NM_001304572)	2406.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	51.48	58.98	38.85	63.42	48.98	48.23	120.41	146.8	88.06
Merged-chr2-68471382-4	chr2	68470843	68471843	+	811.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	CpG	638.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	10.3	3.23	0.0	6.75	3.73	3.22	13.73	3.54	2.5
Merged-chr10-80774795-2	chr10	80774279	80775279	+	811.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 7 of 27)	intron (NM_199322, intron 7 of 27)	19576.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	9.15	6.45	7.4	4.05	3.27	6.43	6.34	4.42	8.12
Merged-chr14-99298577-3	chr14	99298077	99299077	+	811.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009769)	promoter-TSS (NM_009769)	-114.0	NM_009769	12224.0	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	4.0	1.84	1.85	6.75	0.93	4.82	1.06	1.33	2.5
Merged-chr11-43388158-3	chr11	43387688	43388688	+	811.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13727.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	12.01	14.75	1.85	11.47	9.8	3.22	11.62	3.98	5.62
Merged-chr3-126613743-3	chr3	126613250	126614250	+	811.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	16799.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	66.93	90.77	37.0	80.97	60.18	66.71	97.17	81.8	49.96
Merged-chr8-25609206-3	chr8	25608712	25609712	+	811.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	6928.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	30.89	23.96	15.72	24.96	16.79	16.08	46.47	55.27	25.61
Merged-chr4-3677417-2	chr4	3676937	3677937	+	811.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010747)	promoter-TSS (NM_010747)	-684.0	NM_001111096	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	84.09	106.9	104.52	72.19	71.38	70.73	134.14	134.86	76.19
Merged-chr6-116037445-1	chr6	116036945	116037945	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 4 of 5)	intron (NM_177412, intron 4 of 5)	-42440.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	7.44	6.45	5.55	7.42	9.33	10.45	10.56	2.21	7.49
Merged-chrX-53357512-1	chrX	53357012	53358012	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358456, intron 2 of 6)	intron (NM_001358456, intron 2 of 6)	13047.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	11.44	12.9	16.65	8.77	7.46	0.0	21.12	19.9	13.12
Merged-chr6-122658542-3	chr6	122658005	122659005	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32081.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	121.28	152.52	77.7	124.15	124.09	73.95	180.61	199.42	76.19
Merged-chr15-58978825-1	chr15	58978325	58979325	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	45015.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	4.58	5.99	11.1	15.52	2.8	6.43	3.17	1.33	5.0
Merged-chr16-24785894-1	chr16	24785394	24786394	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	MTE2b|LTR|ERVL-MaLR	64039.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.86	4.61	1.85	8.1	5.6	9.65	6.34	7.52	7.49
Merged-chr12-51429238-1	chr12	51428738	51429738	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029825, intron 17 of 24)	intron (NM_029825, intron 17 of 24)	51725.0	NM_029825	76983.0	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.0	5.53	6.47	10.8	4.67	3.22	6.34	3.1	0.0
Merged-chr8-86006716-1	chr8	86006216	86007216	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199446, intron 15 of 31)	MYSERV-int|LTR|ERVK	165714.0	NM_199446	102093.0	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	2.29	4.61	3.7	2.7	4.2	8.04	5.28	7.07	3.75
Merged-chr12-99986963-1	chr12	99986463	99987463	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	22464.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	10.87	11.52	11.1	9.45	10.73	6.43	10.56	8.84	7.49
Merged-chr11-46849346-1	chr11	46848846	46849846	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38547.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	42.33	51.15	61.05	46.56	31.26	49.83	8.45	7.96	2.5
Merged-chr6-31455653-1	chr6	31455153	31456153	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 8 of 17)	intron (NM_013791, intron 8 of 17)	56825.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	39.47	41.47	18.5	47.9	21.93	20.09	74.99	45.1	34.97
Merged-chr13-73513421-1	chr13	73512921	73513921	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 12 of 13)	intron (NM_145376, intron 12 of 13)	-23326.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.0	0.92	3.7	1.35	1.87	4.82	2.11	0.88	1.87
Merged-chr1-93817947-1	chr1	93817447	93818447	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025454, intron 7 of 7)	intron (NM_025454, intron 7 of 7)	-7293.0	NM_178882	98314.0	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	10.3	9.68	30.52	15.52	13.53	19.29	16.9	11.05	9.37
Merged-chr5-120907619-3	chr5	120907133	120908133	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145211)	promoter-TSS (NM_145211)	-108.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	38.9	34.56	10.17	36.43	24.26	28.13	62.31	65.88	28.1
Merged-chr4-59823252-2	chr4	59822781	59823781	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L1MB2|LINE|L1	17631.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	26.89	29.03	29.6	40.48	30.79	30.54	15.84	18.57	24.36
Merged-chr12-73905182-1	chr12	73904682	73905682	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313920, intron 1 of 14)	intron (NM_001313920, intron 1 of 14)	-2685.0	NM_010431	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	17.16	27.19	15.72	3.37	10.73	9.65	9.51	10.17	8.74
Merged-chr3-84854640-1	chr3	84854140	84855140	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	Lx8b|LINE|L1	-9505.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	14.87	5.53	3.7	1.35	4.2	12.86	2.11	0.44	1.25
Merged-chr10-4431007-1	chr10	4430507	4431507	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358796, intron 1 of 13)	MTEb|LTR|ERVL-MaLR	1381.0	NM_025343	66084.0	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	88.67	132.25	97.12	124.15	124.09	127.8	125.69	136.63	129.28
Merged-chr6-31107539-1	chr6	31107039	31108039	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44446.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	25.74	17.05	18.5	19.57	14.93	28.94	24.29	16.36	13.74
Merged-chr2-13279328-1	chr2	13278828	13279828	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 65 of 66)	intron (NM_001081084, intron 65 of 66)	-7913.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	1.72	5.53	1.85	8.1	3.27	4.82	2.11	2.21	3.75
Merged-chr17-35392953-1	chr17	35392453	35393453	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-1146.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	4.58	2.76	0.0	4.05	1.87	0.0	12.67	5.31	5.62
Merged-chr18-36511173-1	chr18	36510673	36511673	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	4632.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	23.45	12.9	5.55	12.14	7.46	4.02	12.67	9.73	13.12
Merged-chr1-156042094-1	chr1	156041594	156042594	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	1233.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	29.17	21.2	31.45	27.66	15.86	4.02	52.81	44.22	18.74
Merged-chr5-135470604-1	chr5	135470104	135471104	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	ORR1E|LTR|ERVL-MaLR	74518.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	55.49	69.12	45.32	76.24	44.78	59.48	71.82	61.46	28.1
Merged-chrX-48341896-2	chrX	48341402	48342402	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 1 of 14)	CpG	544.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	8.01	9.22	13.87	10.8	6.06	20.9	11.62	8.4	6.25
Merged-chr7-127759945-3	chr7	127759464	127760464	+	811.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-9851.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	24.6	19.35	25.9	16.19	15.86	26.53	16.9	15.03	18.11
Merged-chr6-125651503-1	chr6	125651003	125652003	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 34 of 51)	intron (NM_011708, intron 34 of 51)	-38916.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	5.72	4.15	0.0	1.35	3.27	3.22	1.06	1.77	0.0
Merged-chr14-54780541-1	chr14	54780041	54781041	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	(A)n|Simple_repeat|Simple_repeat	1345.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	42.9	44.24	49.95	51.95	52.25	75.56	74.99	84.9	59.33
Merged-chr16-49839162-1	chr16	49838662	49839662	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16492.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	72.08	71.42	39.77	71.52	67.64	58.68	76.05	77.82	44.97
Merged-chr17-22225183-1	chr17	22224683	22225683	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205095, intron 1 of 4)	Lx2|LINE|L1	431.0	NM_001205095	240038.0	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	128.14	227.17	97.12	103.91	178.67	97.26	186.94	189.25	98.68
Merged-chr16-62785785-1	chr16	62785285	62786285	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	931.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	42.33	33.64	20.35	33.74	24.26	20.9	47.53	44.22	20.61
Merged-chr6-134092194-1	chr6	134091694	134092694	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	56494.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	24.6	13.82	9.25	14.84	7.93	13.66	15.84	7.96	5.0
Merged-chr11-58610177-1	chr11	58609677	58610677	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144544, intron 5 of 5)	MLT1F2|LTR|ERVL-MaLR	3315.0	NM_144544	78354.0	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	2.29	1.84	1.85	14.84	13.06	3.22	0.0	3.54	4.37
Merged-chr3-31061909-1	chr3	31061409	31062409	+	811.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	22943.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	217.38	223.02	126.72	197.02	207.6	148.7	230.25	286.52	148.01
Merged-chr5-32611607-2	chr5	32611096	32612096	+	811.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009535, exon 1 of 12)	5' UTR (NM_009535, exon 1 of 12)	425.0	NM_009535	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	9.72	3.69	3.7	9.45	3.27	0.0	11.62	3.54	5.0
Merged-chr4-123531046-3	chr4	123530537	123531537	+	810.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 5 of 92)	intron (NM_001199137, intron 5 of 92)	-85383.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	17.73	19.81	9.25	15.52	12.13	11.25	35.91	37.58	13.12
Merged-chr11-75548103-3	chr11	75547595	75548595	+	810.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	L1ME3G|LINE|L1	-3334.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	89.81	91.24	66.6	85.01	54.58	123.78	78.16	68.54	48.09
Merged-chr13-101914244-3	chr13	101913717	101914717	+	810.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-146000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	30.89	24.42	15.72	34.41	15.86	33.76	20.07	34.49	37.47
Merged-chr11-79142218-2	chr11	79141732	79142732	+	810.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	4241.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	17.16	12.9	19.42	16.87	10.73	17.68	17.96	26.97	14.99
Merged-chr1-195018327-2	chr1	195017824	195018824	+	810.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015566, intron 1 of 7)	intron (NR_015566, intron 1 of 7)	925.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	16.02	16.59	9.25	6.75	7.46	11.25	4.22	2.65	4.37
Merged-chr18-33464090-2	chr18	33463578	33464578	+	810.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045415)	promoter-TSS (NR_045415)	-49.0	NM_001109988	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	2.86	2.3	1.85	12.82	0.47	6.43	7.39	2.65	2.5
Merged-chr4-6371543-2	chr4	6371107	6372107	+	810.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	URR1A|DNA|hAT-Charlie	5927.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	129.28	126.25	62.9	153.16	147.88	110.12	137.3	169.35	98.68
Merged-chr4-32983406-3	chr4	32982951	32983951	+	810.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027491, exon 1 of 7)	5' UTR (NM_027491, exon 1 of 7)	453.0	NM_027491	52187.0	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	20.02	9.22	2.77	64.1	44.78	20.9	16.9	7.52	1.25
Merged-chr19-11048238-3	chr19	11047729	11048729	+	810.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102366, intron 2 of 2)	intron (NR_102366, intron 2 of 2)	2337.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	45.19	68.66	86.95	63.42	43.39	60.28	53.87	62.79	48.09
Merged-chr19-36822646-2	chr19	36822163	36823163	+	810.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-11569.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	4.58	6.45	1.85	9.45	8.86	4.82	4.22	3.54	3.75
Merged-chr11-46842438-3	chr11	46841929	46842929	+	810.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 8 of 8)	intron (NM_178759, intron 8 of 8)	31630.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	27.46	27.65	38.85	56.0	39.19	60.28	30.63	33.16	25.61
Merged-chr10-34158986-2	chr10	34158490	34159490	+	810.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 4 of 5)	ORR1E|LTR|ERVL-MaLR	-31018.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	36.61	25.34	25.9	32.39	24.72	15.27	19.01	22.55	15.61
Merged-chr13-4618436-2	chr13	4617944	4618944	+	810.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9280.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.0	6.91	0.0	5.4	7.0	3.22	4.22	5.75	9.99
Merged-chr2-129491858-1	chr2	129491358	129492358	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RMER13A2|LTR|ERVK	44744.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	15.45	16.13	16.65	31.04	16.79	23.31	4.22	8.84	3.75
Merged-chr18-58576161-4	chr18	58575676	58576676	+	810.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081072, intron 2 of 9)	intron (NM_001081072, intron 2 of 9)	19936.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	17.16	17.97	11.1	29.01	23.33	28.94	17.96	14.15	6.25
Merged-chr4-88719015-1	chr4	88718515	88719515	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172871, exon 1 of 1)	3' UTR (NM_172871, exon 1 of 1)	3493.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	37.76	73.26	13.87	62.07	78.37	62.7	67.6	62.35	44.97
Merged-chr16-3703092-2	chr16	3702604	3703604	+	810.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	15020.0	NM_001161790	54483.0	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	3.43	3.69	1.85	2.02	3.73	8.04	4.22	2.21	15.61
Merged-chr7-97580420-5	chr7	97579919	97580919	+	810.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177947)	promoter-TSS (NM_001177947)	523.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	135.0	152.06	199.79	104.58	91.44	179.24	167.93	133.09	105.55
Merged-chr17-50189481-3	chr17	50188986	50189986	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1011.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	37.18	16.13	16.65	45.21	30.79	16.08	34.85	43.33	16.86
Merged-chr3-30975543-3	chr3	30975038	30976038	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-6123.0	NM_001165956	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	6.86	5.07	1.85	6.75	0.93	1.61	3.17	6.63	1.25
Merged-chr1-91055114-3	chr1	91054625	91055625	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	1681.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	58.92	69.58	57.35	56.0	38.72	30.54	77.1	68.54	52.46
Merged-chr9-54736537-3	chr9	54736029	54737029	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1980.0	NM_001025375	66317.0	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	12.01	8.75	7.4	12.14	12.6	6.43	7.39	5.75	9.99
Merged-chr2-181548427-3	chr2	181547900	181548900	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 4 of 5)	intron (NM_001271584, intron 4 of 5)	27915.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	9.15	7.83	14.8	10.12	6.06	14.47	7.39	4.42	11.87
Merged-chr6-135183976-3	chr6	135183490	135184490	+	810.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-4490.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	4.58	4.61	5.55	5.4	3.27	1.61	46.47	53.94	22.48
Merged-chr11-69628480-3	chr11	69627989	69628989	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-4482.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	58.92	63.59	26.82	56.68	37.79	56.27	61.26	99.05	43.09
Merged-chr15-73492439-2	chr15	73491939	73492939	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20121.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	2.29	5.53	0.0	6.07	3.27	1.61	4.22	3.1	7.49
Merged-chr7-71875466-2	chr7	71874961	71875961	+	810.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-34234.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	18.31	26.73	25.9	31.04	20.06	34.56	12.67	8.84	8.12
Merged-chr19-61004360-1	chr19	61003860	61004860	+	810.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	114611.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.29	2.3	0.0	8.77	4.67	8.04	1.06	2.65	2.5
Merged-chr5-114604479-1	chr5	114603979	114604979	+	810.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	36228.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	3.43	1.38	5.55	2.7	1.87	6.43	5.28	3.1	2.5
Merged-chr13-60707450-3	chr13	60706995	60707995	+	810.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78869.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	80.09	61.75	57.35	70.85	51.78	46.62	16.9	23.88	22.48
Merged-chr12-75727645-3	chr12	75727185	75728185	+	810.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	8044.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	44.62	71.88	49.95	65.45	73.24	41.8	63.37	63.67	23.11
Merged-chr3-95664359-5	chr3	95663930	95664930	+	810.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5709.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	53.77	49.76	29.6	68.15	30.79	44.21	73.93	57.92	52.46
Merged-chr5-113638210-1	chr5	113637710	113638710	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	5393.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	37.18	31.79	37.0	24.96	23.33	60.28	74.99	54.39	24.36
Merged-chr3-142596951-1	chr3	142596451	142597451	+	810.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010259, intron 1 of 10)	Lx9|LINE|L1	2104.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	14.87	22.58	28.67	11.47	10.73	11.25	17.96	21.67	14.99
Merged-chr10-8898475-1	chr10	8897975	8898975	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.72	3.23	3.7	8.1	0.47	8.84	0.0	2.21	5.0
Merged-chr15-67424130-1	chr15	67423630	67424630	+	810.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	197361.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.86	4.15	0.0	5.4	5.6	3.22	8.45	3.1	1.25
Merged-chr18-9377523-3	chr18	9377001	9378001	+	810.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 3 of 9)	intron (NM_026484, intron 3 of 9)	72653.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	28.03	28.11	26.82	14.17	23.79	20.09	19.01	27.86	33.1
Merged-chr8-36866939-2	chr8	36866469	36867469	+	810.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	L3|LINE|CR1	85473.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	3.43	9.22	9.25	23.62	15.39	11.25	21.12	29.18	30.6
Merged-chr5-3362206-3	chr5	3361708	3362708	+	810.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	18315.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	17.73	20.74	17.57	24.96	22.39	20.09	22.18	10.61	19.36
Merged-chr13-101759448-2	chr13	101758951	101759951	+	810.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	8766.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	32.04	31.33	15.72	26.99	25.66	19.29	30.63	21.67	28.1
Merged-chr3-121694113-3	chr3	121693611	121694611	+	810.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23348.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	34.9	24.42	17.57	20.92	16.33	20.9	53.87	59.25	23.73
Merged-chr5-66364060-3	chr5	66363567	66364567	+	810.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310626, intron 9 of 15)	intron (NM_001310626, intron 9 of 15)	-26402.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	6.86	12.44	5.55	13.49	15.39	19.29	13.73	16.36	9.99
Merged-chr14-66280374-3	chr14	66279925	66280925	+	810.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	627.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	113.84	105.98	112.84	78.94	96.1	77.16	134.14	113.19	77.44
Merged-chr19-22916007-1	chr19	22915507	22916507	+	810.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035239, intron 19 of 24)	intron (NM_001035239, intron 19 of 24)	165402.0	NR_029591	387200.0		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	4.0	3.23	1.85	8.77	8.4	12.86	15.84	3.1	13.12
Merged-chr2-58282720-3	chr2	58282213	58283213	+	810.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033369, intron 5 of 7)	intron (NM_001033369, intron 5 of 7)	5934.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	1.14	4.15	3.7	4.72	6.06	1.61	2.11	2.65	1.25
Merged-chr7-118766189-3	chr7	118765678	118766678	+	810.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 8 of 30)	intron (NM_027815, intron 8 of 30)	25907.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	13.73	9.68	7.4	7.42	7.46	10.45	8.45	4.42	3.12
Merged-chr11-22710881-3	chr11	22710380	22711380	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	148855.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	4.58	6.91	0.92	4.05	3.73	1.61	5.28	0.44	3.75
Merged-chr5-30959465-2	chr5	30958997	30959997	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294302, intron 1 of 7)	intron (NM_001294302, intron 1 of 7)	830.0	NM_001294302	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	80.09	98.15	75.85	78.94	70.91	62.7	108.79	121.15	58.08
Merged-chr5-99309150-2	chr5	99308651	99309651	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-56224.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	18.31	15.67	11.1	14.17	10.73	12.06	10.56	1.33	1.25
Merged-chr2-157071750-2	chr2	157071244	157072244	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	7521.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	11.44	11.06	3.7	20.24	7.0	21.7	8.45	10.17	3.75
Merged-chr7-143058483-1	chr7	143057983	143058983	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-4797.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	77.8	76.95	80.47	42.51	34.99	73.95	65.48	58.37	64.33
Merged-chr16-90285342-2	chr16	90284839	90285839	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178923)	promoter-TSS (NM_178923)	-836.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	48.62	70.04	72.15	50.6	55.98	53.05	55.98	81.8	61.2
Merged-chr19-21896511-2	chr19	21896021	21897021	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	118181.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	24.03	15.67	27.75	20.24	13.06	8.84	12.67	11.5	8.12
Merged-chr6-5200125-1	chr6	5199625	5200625	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6179.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	5.15	1.84	0.0	4.72	3.73	8.04	0.0	1.77	6.25
Merged-chr14-30137132-3	chr14	30136654	30137654	+	810.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 9 of 46)	intron (NM_001083616, intron 9 of 46)	114521.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	5.72	0.46	5.55	2.7	1.87	0.0	1.06	5.31	5.62
Merged-chr11-40402484-1	chr11	40401984	40402984	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	290198.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.0	2.76	1.85	2.02	1.4	1.61	0.0	1.77	5.0
Merged-chr8-41292225-2	chr8	41291712	41292712	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 21 of 37)	intron (NM_023662, intron 21 of 37)	52453.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	9.72	11.98	1.85	4.05	2.8	8.04	20.07	16.8	13.74
Merged-chr10-67715805-1	chr10	67715305	67716305	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143846.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	50.91	52.99	37.0	66.12	35.45	57.07	46.47	42.45	44.34
Merged-chr17-50181190-1	chr17	50180690	50181690	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	9307.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.15	2.76	3.7	11.47	3.27	1.61	3.17	2.21	5.0
Merged-chr3-51652433-2	chr3	51651930	51652930	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8749.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	7.44	7.83	6.47	8.77	6.06	0.0	8.45	9.73	3.12
Merged-chr8-120683752-1	chr8	120683252	120684252	+	810.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15432.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	16.02	11.06	14.8	23.62	13.53	11.25	14.79	12.82	3.75
Merged-chr8-111393824-3	chr8	111393306	111394306	+	810.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178086)	promoter-TSS (NM_178086)	15.0	NM_178086	338521.0	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	4.0	1.38	1.85	2.7	0.93	4.82	4.22	0.88	3.75
Merged-chr5-139338011-3	chr5	139337498	139338498	+	810.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_197980, exon 3 of 3)	3' UTR (NM_197980, exon 3 of 3)	7168.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	49.2	53.45	40.7	64.1	48.52	45.82	63.37	78.71	40.59
Merged-chr13-55622133-2	chr13	55621624	55622624	+	810.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007596)	promoter-TSS (NM_007596)	-881.0	NM_007596	12328.0	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	101.83	100.91	102.67	60.72	83.04	92.44	70.76	71.19	83.06
Merged-chr4-130782692-3	chr4	130782179	130783179	+	810.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9858.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	45.76	51.61	75.85	39.13	26.12	57.87	51.75	54.83	29.35
Merged-chr10-30787918-2	chr10	30787414	30788414	+	810.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	15412.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	12.59	12.9	14.8	17.54	14.46	14.47	13.73	11.5	11.24
Merged-chr10-122817773-2	chr10	122817277	122818277	+	810.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 4 of 9)	intron (NM_001110218, intron 4 of 9)	138462.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	6.86	7.83	16.65	24.29	21.46	13.66	7.39	6.19	3.75
Merged-chr9-107738235-1	chr9	107737735	107738735	+	810.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27760.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	4.58	2.76	0.0	2.7	3.27	7.23	5.28	0.0	3.75
Merged-chr7-101352657-1	chr7	101352157	101353157	+	810.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	4588.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	10.3	5.07	12.95	8.77	3.73	8.04	5.28	0.44	5.0
Merged-chr9-44581662-1	chr9	44581162	44582162	+	810.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23230.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	14.87	30.87	7.4	21.59	17.26	12.86	26.4	38.03	19.36
Merged-chr15-38650541-3	chr15	38650045	38651045	+	810.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11359.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	65.79	72.34	24.05	66.12	61.58	72.34	66.54	33.16	24.36
Merged-chr8-71752503-3	chr8	71751980	71752980	+	810.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26799.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	37.18	43.77	39.77	30.36	11.66	18.49	67.6	78.26	19.36
Merged-chr16-43448244-1	chr16	43447744	43448744	+	810.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	-28048.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	25.17	32.25	35.15	29.69	23.79	20.09	27.46	24.32	29.98
Merged-chr1-177703597-2	chr1	177703099	177704099	+	810.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26215.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	4.0	3.23	3.7	5.4	2.33	3.22	6.34	7.07	7.49
Merged-chr11-83082970-3	chr11	83082474	83083474	+	810.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SRV_MM-int|LTR|ERVK	17862.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	34.9	30.41	36.07	35.76	24.72	36.97	33.8	29.63	13.74
Merged-chr15-83134464-3	chr15	83133954	83134954	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 3 of 7)	intron (NM_001347082, intron 3 of 7)	-11653.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	72.08	95.38	51.8	78.94	48.05	54.66	96.11	76.94	56.83
Merged-chr17-5582418-2	chr17	5581915	5582915	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	89815.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	33.75	11.06	21.27	18.22	17.73	23.31	15.84	10.61	5.0
Merged-chr16-77644521-2	chr16	77644016	77645016	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1757.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	8.01	7.37	3.7	12.82	7.93	8.04	5.28	3.54	3.75
Merged-chr10-75492134-3	chr10	75491639	75492639	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	25242.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	12.01	17.97	21.27	23.62	18.66	11.25	21.12	20.78	9.37
Merged-chr3-9598204-2	chr3	9597708	9598708	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	11877.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.86	1.84	3.7	3.37	2.33	3.22	2.11	0.88	5.0
Merged-chr10-83565651-1	chr10	83565151	83566151	+	810.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033375, intron 14 of 32)	intron (NM_001033375, intron 14 of 32)	21710.0	NM_001033375	319277.0	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	7.44	8.29	10.17	6.07	3.73	2.41	8.45	3.98	17.49
Merged-chr13-100453315-2	chr13	100452807	100453807	+	810.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008670)	promoter-TSS (NM_008670)	-443.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	52.06	47.92	39.77	27.66	28.92	45.01	118.29	146.36	98.68
Merged-chr7-121078029-3	chr7	121077519	121078519	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	8.58	17.97	1.85	15.52	12.6	24.92	14.79	9.73	14.99
Merged-chr1-38011855-3	chr1	38011372	38012372	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	13862.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	57.78	49.76	56.42	44.53	46.65	65.91	71.82	49.96	32.48
Merged-chr7-4922777-3	chr7	4922281	4923281	+	810.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358882)	promoter-TSS (NM_001358882)	-99.0	NM_001358882	269854.0	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	9.15	3.23	3.7	4.72	0.47	0.0	4.22	7.07	0.0
Merged-chr13-12395784-1	chr13	12395284	12396284	+	810.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144835, exon 2 of 45)	exon (NM_144835, exon 2 of 45)	409.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	82.38	70.04	73.07	70.85	61.58	83.59	95.06	109.66	48.71
Merged-chr11-120219138-3	chr11	120218634	120219634	+	810.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12483.0	NR_151480	102640779.0	Mm.394084	NM_175248		2900052L18Rik	-	RIKEN cDNA 2900052L18 gene	ncRNA	10.3	4.15	5.55	7.42	3.73	3.22	5.28	2.65	5.0
Merged-chr9-35027912-3	chr9	35027408	35028408	+	810.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190912, intron 12 of 15)	(TTG)n|Simple_repeat|Simple_repeat	-88820.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.86	4.61	0.92	8.1	1.87	8.04	5.28	2.21	11.24
Merged-chr12-70226970-3	chr12	70226508	70227508	+	810.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045174)	promoter-TSS (NR_045174)	675.0	NM_133198	110095.0	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	36.04	32.72	39.77	37.78	31.72	75.56	63.37	54.39	47.46
Merged-chr17-23844129-2	chr17	23843614	23844614	+	810.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027644)	promoter-TSS (NM_027644)	42.0	NM_027644	71003.0	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	2.86	5.07	11.1	4.72	7.46	10.45	3.17	1.33	1.87
Merged-chr16-44032555-2	chr16	44032035	44033035	+	810.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 2 of 16)	MTE2a|LTR|ERVL-MaLR	-4590.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	37.76	47.46	57.35	34.41	31.26	38.58	108.79	98.16	56.21
Merged-chr2-37735944-3	chr2	37735405	37736405	+	810.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-40344.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	9.15	9.22	3.7	9.45	7.0	1.61	1.06	5.75	5.0
Merged-chr13-107947867-3	chr13	107947371	107948371	+	810.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR83|LTR|ERVL	-57807.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	21.74	16.59	12.95	22.94	13.06	22.51	19.01	22.11	9.99
Merged-chr4-7154434-3	chr4	7153943	7154943	+	810.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163720.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	16.02	12.44	11.1	10.12	8.86	16.08	6.34	7.52	6.25
Merged-chr7-59293525-2	chr7	59293033	59294033	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011668, intron 11 of 12)	(CAAAA)n|Simple_repeat|Simple_repeat	53891.0	NR_146600	102642160.0		NR_146600		Gm22496	-	predicted gene, 22496	snoRNA	6.29	11.06	12.95	15.52	14.0	9.65	8.45	6.19	3.75
Merged-chr15-76722305-2	chr15	76721810	76722810	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198119)	promoter-TSS (NM_198119)	-137.0	NM_198119	378937.0	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	13.73	3.23	6.47	10.8	4.2	9.65	7.39	1.33	5.0
Merged-chr11-116850294-1	chr11	116849794	116850794	+	810.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028865)	TTS (NM_028865)	2800.0	NM_011358	20382.0	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	17.73	15.21	9.25	19.57	15.39	11.25	22.18	30.51	8.74
Merged-chr16-67647134-1	chr16	67646634	67647634	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26226.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	3.43	2.76	5.55	0.67	2.8	0.0	3.17	4.42	5.0
Merged-chr13-5858963-2	chr13	5858452	5859452	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045891)	promoter-TSS (NR_045891)	-860.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	12.59	11.98	22.2	12.82	8.4	11.25	5.28	3.54	9.37
Merged-chr9-35060095-3	chr9	35059619	35060619	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	-56609.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	40.04	39.17	35.15	33.06	23.33	43.4	29.57	28.3	34.97
Merged-chr13-41788215-2	chr13	41787720	41788720	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	59268.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	36.04	29.49	21.27	22.94	19.59	14.47	19.01	14.15	9.99
Merged-chr6-124262895-1	chr6	124262395	124263395	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31111.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	11.44	10.6	5.55	9.45	8.86	5.63	2.11	2.65	12.49
Merged-chr8-119438178-1	chr8	119437678	119438678	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	B4A|SINE|B4	1016.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	94.39	86.63	55.5	84.34	64.38	61.09	89.78	107.0	46.84
Merged-chr8-70660484-2	chr8	70659988	70660988	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023217)	promoter-TSS (NM_023217)	-750.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	44.62	25.34	34.22	53.98	28.46	56.27	44.36	42.01	18.11
Merged-chr12-35036341-2	chr12	35035820	35036820	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10869.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	48.05	32.72	38.85	55.33	41.05	52.25	26.4	17.69	21.23
Merged-chr13-70933621-1	chr13	70933121	70934121	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50673.0	NM_029873	77166.0	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	7.44	8.29	1.85	12.82	10.73	7.23	6.34	7.96	8.74
Merged-chr19-56701048-1	chr19	56700548	56701548	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21324.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	8.01	5.07	1.85	6.07	6.53	5.63	7.39	4.86	2.5
Merged-chr19-51227948-1	chr19	51227448	51228448	+	810.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-549302.0	NM_001290356	58178.0	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	1.72	3.69	2.77	6.07	4.2	4.82	6.34	4.42	1.87
Merged-chr11-32643410-1	chr11	32642910	32643910	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	855.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	430.76	440.05	339.46	406.18	305.1	311.07	480.56	461.18	282.91
Merged-chr2-35108941-1	chr2	35108441	35109441	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012018)	promoter-TSS (NM_012018)	-551.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	94.96	87.55	93.42	111.33	77.44	105.3	107.73	141.49	78.07
Merged-chr1-156939057-1	chr1	156938557	156939557	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357391, intron 1 of 19)	CpG	330.0	NM_001159966	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	8.58	5.99	11.1	11.47	6.06	3.22	15.84	3.1	1.25
Merged-chr11-53563225-2	chr11	53562729	53563729	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-4140.0	NM_008443	16568.0	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	23.45	11.06	11.1	32.39	26.59	40.19	5.28	7.52	6.25
Merged-chr1-61181281-1	chr1	61180781	61181781	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-197151.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	3.43	1.38	0.92	4.72	1.87	0.0	0.0	3.98	2.5
Merged-chr10-41620981-2	chr10	41620479	41621479	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 23 of 47)	intron (NM_001358562, intron 23 of 47)	52963.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.72	5.53	0.0	5.4	2.33	3.22	2.11	4.42	3.75
Merged-chr1-23257429-1	chr1	23256929	23257929	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14840.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	92.1	81.56	53.65	69.5	65.31	38.58	61.26	57.92	31.85
Merged-chr7-34840163-2	chr7	34839638	34840638	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-27427.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	5.15	3.69	3.7	11.47	1.87	10.45	0.0	2.21	0.62
Merged-chr13-63148289-1	chr13	63147789	63148789	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-91740.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.3	2.76	1.85	13.49	4.67	6.43	3.17	3.98	5.0
Merged-chr1-156437963-2	chr1	156437470	156438470	+	810.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 10 of 15)	intron (NM_009230, intron 10 of 15)	-17055.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	88.67	64.51	50.87	64.77	44.78	65.11	81.33	73.4	66.2
Merged-chr4-140167168-1	chr4	140166668	140167668	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	24295.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	4.0	1.38	3.7	8.77	8.4	9.65	1.06	0.0	2.5
Merged-chr7-81850967-1	chr7	81850467	81851467	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-8034.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	75.51	74.65	62.9	70.17	67.64	96.45	47.53	60.13	64.33
Merged-chr15-35698675-1	chr15	35698175	35699175	+	810.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-37628.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	5.15	5.99	7.4	7.42	12.13	4.82	6.34	2.21	3.75
Merged-chr19-37448430-3	chr19	37447928	37448928	+	809.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13587.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	58.92	47.92	57.35	53.3	37.32	17.68	69.71	64.11	29.35
Merged-chr1-134784649-3	chr1	134784164	134785164	+	809.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	19057.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	112.69	133.17	99.89	37.11	27.99	41.8	32.74	25.2	35.6
Merged-chr15-98692388-4	chr15	98691904	98692904	+	809.9375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14943.0	NM_172612	223881.0	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	10.87	11.98	0.0	21.59	21.46	5.63	31.69	23.88	8.74
Merged-chr11-94496722-3	chr11	94496195	94497195	+	809.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361558, intron 1 of 8)	intron (NM_001361558, intron 1 of 8)	3279.0	NM_001361558	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	4.0	1.38	0.0	5.4	1.4	4.82	1.06	0.88	1.25
Merged-chr2-73509810-2	chr2	73509303	73510303	+	809.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	19684.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	33.75	32.72	47.17	41.16	39.19	45.01	53.87	30.95	14.36
Merged-chr17-34345176-2	chr17	34344679	34345679	+	809.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010381)	promoter-TSS (NM_010381)	-534.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	128.14	102.75	135.97	18.89	10.26	6.43	6.34	3.98	5.0
Merged-chr3-36532157-3	chr3	36531674	36532674	+	809.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10729.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	36.04	46.08	45.32	34.41	51.32	54.66	47.53	77.82	33.72
Merged-chr18-34858168-3	chr18	34857674	34858674	+	809.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-3033.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	32.04	33.64	25.9	49.25	29.39	44.21	136.25	116.73	69.95
Merged-chr4-88720468-2	chr4	88719973	88720973	+	809.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172871, exon 1 of 1)	exon (NM_172871, exon 1 of 1)	2035.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	35.47	64.97	25.9	45.21	59.71	41.8	48.58	57.48	33.1
Merged-chr7-30393239-4	chr7	30392722	30393722	+	809.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-20566.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	44.05	30.87	16.65	44.53	21.93	38.58	164.76	172.0	128.03
Merged-chr16-33158581-3	chr16	33158071	33159071	+	809.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26500.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	4.0	2.76	3.7	4.72	4.2	1.61	1.06	3.1	5.0
Merged-chr17-69145970-2	chr17	69145455	69146455	+	809.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	-10789.0	NM_013813	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	21.74	22.58	32.37	22.94	16.79	24.11	26.4	18.13	21.86
Merged-chr3-103745495-3	chr3	103744979	103745979	+	809.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010432, intron 14 of 15)	intron (NM_010432, intron 14 of 15)	-7478.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	22.31	22.12	49.02	26.31	15.39	24.92	25.35	17.69	4.37
Merged-chrX-7865939-3	chrX	7865420	7866420	+	809.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-12386.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	26.89	19.81	32.37	12.82	14.0	17.68	9.51	11.05	6.87
Merged-chr19-18583063-1	chr19	18582563	18583563	+	809.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 9 of 9)	intron (NM_017375, intron 9 of 9)	48750.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	16.02	8.29	15.72	10.8	9.8	19.29	14.79	12.38	9.99
Merged-chr19-11910681-2	chr19	11910116	11911116	+	809.8000490000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-1783.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	72.65	76.95	38.85	58.03	55.98	42.6	34.85	24.32	11.87
Merged-chr5-101768029-3	chr5	101767516	101768516	+	809.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173370, intron 1 of 12)	intron (NM_173370, intron 1 of 12)	2886.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	16.59	14.75	28.67	15.52	5.6	8.04	28.52	22.99	21.23
Merged-chr5-53818003-3	chr5	53817476	53818476	+	809.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144517, intron 1 of 20)	intron (NM_144517, intron 1 of 20)	8349.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	9.72	5.53	14.8	2.02	1.87	1.61	12.67	3.54	6.25
Merged-chrX-169807958-1	chrX	169807458	169808458	+	809.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290512, intron 2 of 9)	intron (NM_001290512, intron 2 of 9)	-20201.0	NM_001290504	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	2.86	0.92	1.85	1.35	4.2	4.82	2.11	4.42	3.75
Merged-chr9-32509913-2	chr9	32509380	32510380	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	31572.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	64.64	74.65	92.5	66.12	48.98	58.68	45.42	65.44	57.46
Merged-chr3-94431219-3	chr3	94430724	94431724	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357711, exon 14 of 14)	3' UTR (NM_001357711, exon 14 of 14)	5427.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	15.45	14.75	14.8	29.69	20.53	20.9	28.52	26.97	19.98
Merged-chr12-73658641-3	chr12	73658150	73659150	+	809.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	Charlie1a|DNA|hAT-Charlie	73854.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	25.17	13.82	22.2	18.89	34.06	30.54	29.57	22.11	9.99
Merged-chr1-131524011-3	chr1	131523512	131524512	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	3349.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	26.31	18.89	20.35	15.52	10.26	20.9	24.29	22.55	16.86
Merged-chr4-135256751-3	chr4	135256251	135257251	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	16009.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	37.18	28.57	20.35	47.9	48.52	46.62	33.8	29.63	10.62
Merged-chr19-34789215-3	chr19	34788728	34789728	+	809.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_4-LTR_MM|LTR|ERVK	31545.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	5.72	4.15	4.62	10.12	3.73	2.41	8.45	2.65	4.37
Merged-chr13-20207274-3	chr13	20206781	20207781	+	809.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	116774.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.59	14.75	12.95	35.76	14.93	21.7	16.9	14.59	17.49
Merged-chrX-159510772-3	chrX	159510278	159511278	+	809.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_I-int|LTR|ERV1	-21890.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	57.78	61.75	61.05	48.58	42.45	25.72	32.74	39.8	18.11
Merged-chr7-145089408-2	chr7	145088901	145089901	+	809.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	118718.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.58	4.61	3.7	12.14	7.93	7.23	9.51	10.17	5.0
Merged-chr11-117177487-3	chr11	117176990	117177990	+	809.705566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22171.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.86	0.46	2.77	11.47	1.4	3.22	4.22	3.1	1.25
Merged-chr16-59498825-1	chr16	59498325	59499325	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174848, intron 16 of 18)	RLTR45|LTR|ERVK	27050.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	8.58	7.37	3.7	13.49	9.8	8.04	1.06	1.77	5.62
Merged-chr19-46515563-1	chr19	46515063	46516063	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053100, exon 6 of 6)	exon (NM_053100, exon 6 of 6)	13915.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	25.74	22.58	37.0	26.31	27.52	56.27	26.4	28.3	17.49
Merged-chr16-34120992-3	chr16	34120520	34121520	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 33 of 59)	intron (NM_177357, intron 33 of 59)	-153982.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.86	5.99	1.85	8.1	6.53	9.65	9.51	3.1	3.75
Merged-chr2-170504167-1	chr2	170503667	170504667	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_040367, exon 2 of 3)	non-coding (NR_040367, exon 2 of 3)	-7022.0	NM_009996	13081.0	Mm.6575	NM_009996	ENSMUSG00000038567	Cyp24a1	24-OHase|CP24|Cyp24	cytochrome P450, family 24, subfamily a, polypeptide 1	protein-coding	2.86	1.38	12.02	1.35	0.47	5.63	1.06	0.88	0.0
Merged-chr3-38422021-1	chr3	38421521	38422521	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62795.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	12.59	10.6	25.9	10.8	7.0	9.65	5.28	2.65	5.0
Merged-chr1-135700776-3	chr1	135700271	135701271	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	13.16	7.83	7.4	8.77	2.8	8.04	6.34	4.86	11.24
Merged-chr5-104986889-3	chr5	104986362	104987362	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4145.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	30.89	43.31	16.65	22.94	16.33	25.72	30.63	18.13	20.61
Merged-chr7-19304988-5	chr7	19304522	19305522	+	809.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008036, exon 4 of 4)	exon (NM_008036, exon 4 of 4)	5023.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	18.31	5.99	5.55	9.45	1.87	2.41	3.17	2.21	2.5
Merged-chr16-64884653-1	chr16	64884153	64885153	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	32652.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	20.02	16.59	16.65	7.42	8.86	16.08	7.39	7.52	19.36
Merged-chr3-151424590-1	chr3	151424090	151425090	+	809.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-13292.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	3.43	4.61	0.0	6.07	5.13	4.82	3.17	4.42	3.12
Merged-chr13-100148597-2	chr13	100148098	100149098	+	809.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126182, intron 15 of 15)	intron (NM_001126182, intron 15 of 15)	23743.0	NM_011420	20595.0	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	18.88	24.88	18.5	17.54	14.0	33.76	31.69	19.9	21.86
Merged-chr3-29853375-2	chr3	29852887	29853887	+	809.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37630.0	NR_110437	102636083.0		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	1.72	4.61	1.85	7.42	2.8	9.65	6.34	1.77	3.75
Merged-chr6-115033715-2	chr6	115033203	115034203	+	809.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026894, intron 2 of 7)	intron (NM_026894, intron 2 of 7)	4171.0	NM_026894	68971.0	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	4.0	4.15	1.85	11.47	2.8	8.04	13.73	10.17	7.49
Merged-chr14-54494403-3	chr14	54493908	54494908	+	809.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18308.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	3.43	2.76	0.0	2.7	1.87	3.22	6.34	2.21	0.0
Merged-chr11-3671361-3	chr11	3670855	3671855	+	809.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198162, intron 5 of 25)	intron (NM_198162, intron 5 of 25)	12655.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	8.01	16.13	11.1	10.12	10.73	10.45	11.62	11.05	13.12
Merged-chr19-9066168-3	chr19	9065675	9066675	+	809.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286518, intron 6 of 6)	MIR|SINE|MIR	21781.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	7.44	2.3	9.25	6.75	7.46	4.82	0.0	4.86	1.25
Merged-chr12-8901295-3	chr12	8900724	8901724	+	809.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20083.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	16.02	11.98	17.57	8.1	8.86	15.27	19.01	6.19	14.99
Merged-chr16-35872566-3	chr16	35872069	35873069	+	809.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1187.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	37.18	52.53	28.67	37.11	37.79	49.03	52.81	50.41	40.59
Merged-chr1-161885905-2	chr1	161885405	161886405	+	809.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9223.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	12.01	3.69	3.7	4.72	2.33	3.22	7.39	5.31	1.25
Merged-chr8-125596378-2	chr8	125595892	125596892	+	809.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015535, intron 2 of 2)	intron (NR_015535, intron 2 of 2)	11754.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	8.58	12.9	1.85	25.64	15.39	24.92	7.39	7.07	8.74
Merged-chr2-35346223-2	chr2	35345725	35346725	+	809.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9216.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	12.59	18.89	9.25	22.94	8.86	13.66	11.62	15.92	18.11
Merged-chr7-129403964-3	chr7	129403535	129404535	+	809.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146941.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	9.15	23.5	20.35	16.87	18.66	28.94	32.74	21.22	23.73
Merged-chr9-106474721-3	chr9	106474350	106475350	+	809.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001311150, exon 4 of 11)	exon (NM_001311150, exon 4 of 11)	2099.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	8.01	4.15	0.0	4.72	3.73	7.23	5.28	1.33	2.5
Merged-chr17-80768161-3	chr17	80767664	80768664	+	809.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40139.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	7.44	4.15	1.85	4.72	3.27	3.22	6.34	8.84	2.5
Merged-chr17-34180708-3	chr17	34180196	34181196	+	809.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6634.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	19.45	12.44	25.9	8.1	6.53	9.65	25.35	39.8	23.73
Merged-chr14-31206312-8	chr14	31205866	31206866	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347583, intron 1 of 13)	CpG	460.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	131.0	91.24	96.2	122.8	97.03	114.14	176.38	88.88	68.7
Merged-chr3-98844002-1	chr3	98843502	98844502	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15792.0	NM_001304800	15492.0	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	8.01	8.29	3.7	4.05	12.6	12.86	9.51	2.65	6.25
Merged-chr7-99190086-2	chr7	99189593	99190593	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7380.0	NM_026384	67800.0	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	2.29	2.3	5.55	6.75	2.8	3.22	4.22	0.88	5.0
Merged-chr4-41589928-2	chr4	41589426	41590426	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	20132.0	NM_175138	68922.0	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	5.72	5.99	17.57	1.35	1.4	4.02	14.79	11.5	11.24
Merged-chr1-166146853-2	chr1	166146349	166147349	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	16628.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	2.86	2.3	0.0	4.72	4.2	5.63	4.22	5.31	7.49
Merged-chr5-112283719-3	chr5	112283235	112284235	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	7044.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	60.64	57.6	41.62	63.42	48.05	64.3	71.82	59.69	57.46
Merged-chr7-143041685-3	chr7	143041189	143042189	+	809.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 2 of 4)	intron (NR_110355, intron 2 of 4)	-11061.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	46.91	42.85	38.85	34.41	32.19	32.15	62.31	37.14	28.73
Merged-chr3-88494112-2	chr3	88493608	88494608	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019390)	promoter-TSS (NM_019390)	-796.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	29.17	23.5	12.95	30.36	26.12	17.68	14.79	15.48	6.25
Merged-chr12-102368929-1	chr12	102368429	102369429	+	809.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70884.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	102.97	117.96	162.79	163.28	144.15	234.71	191.17	150.78	93.68
Merged-chr17-69397357-3	chr17	69396859	69397859	+	809.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13555.0	NM_009547	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	19.45	24.88	14.8	34.41	35.45	28.94	26.4	33.6	21.23
Merged-chr3-132756408-3	chr3	132755905	132756905	+	809.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	72261.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	32.61	27.65	20.35	42.51	42.45	29.74	31.69	38.91	14.36
Merged-chr5-147437653-2	chr5	147437122	147438122	+	809.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	7466.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	91.53	91.24	37.0	69.5	57.85	52.25	19.01	14.15	14.36
Merged-chr18-5819113-3	chr18	5818647	5819647	+	809.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226500.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	14.87	11.06	9.25	20.92	14.93	31.35	24.29	21.67	18.74
Merged-chr1-85658706-3	chr1	85658198	85659198	+	809.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013673, intron 1 of 19)	intron (NM_013673, intron 1 of 19)	8710.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	13.73	11.52	13.87	10.12	7.93	12.06	7.39	3.98	13.74
Merged-chr11-31808104-3	chr11	31807654	31808654	+	809.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102312, intron 1 of 4)	intron (NR_102312, intron 1 of 4)	16393.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	14.3	4.15	14.8	17.54	12.13	4.82	13.73	8.4	1.25
Merged-chr10-11319796-2	chr10	11319292	11320292	+	809.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23653.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	10.87	9.68	0.92	5.4	5.13	6.43	2.11	5.75	1.25
Merged-chr15-66279492-3	chr15	66279000	66280000	+	809.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	6724.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	13.16	9.22	5.55	8.77	5.6	4.82	4.22	5.75	5.62
Merged-chr11-6679221-2	chr11	6678717	6679717	+	809.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-18981.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	8.01	5.99	7.4	5.4	4.2	8.04	0.0	1.33	1.25
Merged-chr8-95009490-2	chr8	95008992	95009992	+	809.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018882, intron 10 of 13)	intron (NM_018882, intron 10 of 13)	-8200.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	3.43	2.3	9.25	3.37	2.33	0.0	6.34	1.33	3.75
Merged-chr5-147911907-2	chr5	147911411	147912411	+	809.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17096.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	27.46	15.67	17.57	19.57	15.39	19.29	70.76	68.09	31.85
Merged-chr19-12734210-3	chr19	12733699	12734699	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	31433.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	9.72	11.52	12.02	15.52	15.86	9.65	25.35	30.07	10.62
Merged-chrX-106026795-3	chrX	106026306	106027306	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109757)	promoter-TSS (NM_001109757)	-418.0	NM_001109757	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	35.47	17.51	22.2	28.34	18.19	27.33	30.63	19.9	16.86
Merged-chr5-92308941-1	chr5	92308441	92309441	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172713, intron 1 of 21)	B3|SINE|B2	1083.0	NM_172713	231452.0	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	16.59	14.28	3.7	18.89	14.46	9.65	13.73	10.61	2.5
Merged-chrX-159269310-1	chrX	159268810	159269810	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148945, intron 1 of 21)	intron (NM_148945, intron 1 of 21)	13528.0	NM_001346675	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	1.72	3.23	0.0	2.02	1.4	0.0	5.28	0.88	0.0
Merged-chr13-107923884-1	chr13	107923384	107924384	+	809.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33820.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.88	11.06	12.95	40.48	22.86	24.92	28.52	22.55	33.1
Merged-chr5-53437393-3	chr5	53436894	53437894	+	809.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118385.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	4.0	2.76	1.85	3.37	2.8	7.23	1.06	4.42	5.0
Merged-chr11-72461823-3	chr11	72461285	72462285	+	809.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 3 of 12)	L1ME3Cz|LINE|L1	13242.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	84.09	81.56	49.95	65.45	53.18	61.09	63.37	61.02	80.56
Merged-chr15-65106082-1	chr15	65105582	65106582	+	809.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-183786.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	2.29	5.07	0.0	7.42	7.93	14.47	9.51	3.1	1.87
Merged-chr19-45961897-3	chr19	45961378	45962378	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198296, intron 8 of 25)	intron (NM_198296, intron 8 of 25)	-36259.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	12.59	11.98	11.1	16.87	5.13	8.84	22.18	17.24	18.74
Merged-chr18-69663248-3	chr18	69662731	69663731	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	MIR3|SINE|MIR	-262328.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	49.77	88.01	48.1	70.85	61.58	75.56	83.44	102.58	46.84
Merged-chr12-100006040-3	chr12	100005537	100006537	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	Charlie2b|DNA|hAT-Charlie	41538.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	132.14	120.73	59.2	120.77	101.23	86.01	121.46	138.84	53.71
Merged-chr3-81925137-3	chr3	81924646	81925646	+	809.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7455.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	6.86	4.61	0.0	4.72	1.87	2.41	4.22	2.21	0.0
Merged-chr7-16058026-2	chr7	16057509	16058509	+	809.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-13836.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	12.59	11.52	10.17	10.8	17.73	20.09	24.29	33.6	13.12
Merged-chr11-68446079-1	chr11	68445579	68446579	+	809.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	URR1B|DNA|hAT-Charlie	13954.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	12.59	11.06	1.85	17.54	13.53	23.31	21.12	12.38	13.12
Merged-chr3-31414141-3	chr3	31413726	31414726	+	809.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103907.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	7.44	7.83	5.55	31.04	27.99	12.86	50.7	26.09	16.86
Merged-chr11-16669949-3	chr11	16669447	16670447	+	809.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82256.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	12.01	12.44	4.62	12.14	11.66	28.94	10.56	16.8	9.99
Merged-chr18-64598132-2	chr18	64597636	64598636	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	62864.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	9.15	8.29	7.4	4.72	7.46	12.06	1.06	1.33	8.74
Merged-chr8-14816410-2	chr8	14815901	14816901	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 9 of 15)	(TTGG)n|Simple_repeat|Simple_repeat	-72135.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	17.16	15.67	17.57	25.64	25.66	28.94	17.96	18.13	11.87
Merged-chr3-51327597-2	chr3	51327102	51328102	+	809.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	B3|SINE|B2	13042.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	117.84	143.76	98.05	154.51	151.15	146.29	186.94	198.53	109.29
Merged-chrX-6352257-2	chrX	6351759	6352759	+	809.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-31535.0	NM_009757	12155.0	Mm.42160	NM_009757	ENSMUSG00000023279	Bmp15	AU015375|AU018861|AU021453|Bmp-15|C86824|C87336|GDF-9B	bone morphogenetic protein 15	protein-coding	4.0	2.76	9.25	6.07	1.87	3.22	3.17	9.73	3.75
Merged-chr15-73078809-6	chr15	73078325	73079325	+	809.141663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11587.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	72.08	81.56	61.05	60.72	56.45	73.14	79.21	81.8	69.32
Merged-chr3-136672015-3	chr3	136671516	136672516	+	809.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	1950.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	60.64	52.53	47.17	70.17	52.72	60.28	61.26	43.77	42.47
Merged-chr15-100754274-2	chr15	100753772	100754772	+	809.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7475.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	25.17	22.12	1.85	8.1	4.2	1.61	27.46	12.82	18.74
Merged-chr5-142394812-2	chr5	142394318	142395318	+	809.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-6679.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	1.72	5.07	1.85	2.7	5.13	1.61	5.28	3.1	3.75
Merged-chr19-32989602-2	chr19	32989114	32990114	+	809.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-167498.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	78.94	112.89	46.25	87.71	63.91	67.52	130.97	124.25	69.95
Merged-chr3-136834036-3	chr3	136833525	136834525	+	809.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	163959.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.3	4.15	5.55	7.42	5.13	4.02	7.39	3.98	8.74
Merged-chr9-50593150-3	chr9	50592664	50593664	+	809.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10685.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	20.02	17.05	7.4	11.47	7.93	12.86	7.39	12.82	6.25
Merged-chr1-53845123-2	chr1	53844622	53845622	+	809.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 21 of 28)	MTC|LTR|ERVL-MaLR	-4302.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	70.36	60.36	60.12	74.89	62.51	45.82	64.43	60.58	56.83
Merged-chr4-120986612-2	chr4	120986100	120987100	+	809.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	-13278.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	11.44	10.6	7.4	16.87	8.4	8.84	10.56	6.63	5.0
Merged-chr9-69453603-3	chr9	69453110	69454110	+	809.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007585)	promoter-TSS (NM_007585)	-73.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	23.45	18.89	15.72	36.43	23.79	28.13	16.9	10.17	11.87
Merged-chr3-79559320-3	chr3	79558831	79559831	+	809.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	8348.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	48.62	31.79	40.7	59.38	33.59	42.6	49.64	39.8	30.6
Merged-chr6-98575482-3	chr6	98575006	98576006	+	809.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-232752.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	12.01	10.14	12.02	12.14	11.66	10.45	25.35	18.13	22.48
Merged-chr11-57686313-3	chr11	57685796	57686796	+	809.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-36802.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	20.02	18.89	7.4	12.82	19.13	11.25	45.42	37.58	44.97
Merged-chr15-8737498-3	chr15	8736989	8737989	+	809.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-26682.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.86	1.84	8.32	2.02	0.93	4.82	7.39	1.77	8.12
Merged-chr6-148533578-1	chr6	148533078	148534078	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80731.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	66.36	55.75	33.3	44.53	20.99	40.99	47.53	39.35	41.84
Merged-chr13-32312892-3	chr13	32312391	32313391	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	25653.0	NM_146041	218138.0	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	4.58	3.23	3.7	4.05	1.87	0.0	2.11	1.77	1.25
Merged-chr7-29441967-1	chr7	29441467	29442467	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	LTR67B|LTR|ERVL	63493.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	9.15	5.07	2.77	3.37	4.67	5.63	3.17	5.75	3.75
Merged-chr2-117444499-1	chr2	117443999	117444999	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101622.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	12.01	6.91	5.55	10.8	3.27	5.63	7.39	4.86	6.25
Merged-chr1-87623047-1	chr1	87622547	87623547	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	intron (NM_001110192, intron 1 of 26)	2735.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	82.38	98.15	90.65	93.79	69.98	133.43	103.51	130.0	92.43
Merged-chr7-16399216-2	chr7	16398747	16399747	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1949.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	195.64	226.25	202.56	209.84	195.93	228.28	242.92	280.33	137.4
Merged-chr14-46848406-1	chr14	46847906	46848906	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026832, intron 4 of 5)	intron (NM_026832, intron 4 of 5)	16272.0	NM_001360455	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	8.01	7.37	14.8	14.84	9.33	4.82	0.0	1.33	5.0
Merged-chr16-43390558-1	chr16	43390058	43391058	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	29638.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	13.16	11.98	3.7	10.8	4.2	9.65	8.45	11.05	8.74
Merged-chr18-79271604-1	chr18	79271104	79272104	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162213.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.0	5.07	5.55	4.05	5.13	3.22	4.22	7.07	5.0
Merged-chr2-167385523-1	chr2	167385023	167386023	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36187.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	5.15	5.07	0.0	6.75	1.87	3.22	10.56	3.98	9.99
Merged-chr3-54102396-2	chr3	54101870	54102870	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-53687.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	1.14	2.3	1.85	2.7	3.27	4.82	23.24	27.86	19.98
Merged-chr2-132606304-1	chr2	132605804	132606804	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 2 of 3)	B1_Mur1|SINE|Alu	8108.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	25.74	13.36	22.2	29.69	20.99	28.13	10.56	16.36	8.74
Merged-chr3-51778473-2	chr3	51777964	51778964	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	117285.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.86	4.61	6.47	14.17	3.73	4.82	5.28	2.21	1.25
Merged-chr10-111178105-4	chr10	111177611	111178611	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	13309.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	58.92	77.87	31.45	59.38	62.98	32.96	39.08	33.6	21.86
Merged-chr16-43363897-1	chr16	43363397	43364397	+	809.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	56299.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	91.53	113.35	91.57	78.94	82.11	104.49	102.45	118.5	69.95
Merged-chr2-60124411-1	chr2	60123911	60124911	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	1329.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	196.21	245.6	120.24	178.13	224.86	157.54	220.74	243.19	99.92
Merged-chr11-88599462-1	chr11	88598962	88599962	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	-19789.0	NR_131025	68397.0	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	6.86	6.45	5.55	11.47	4.2	6.43	6.34	7.07	7.49
Merged-chr4-9658049-3	chr4	9657581	9658581	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	11081.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	160.75	97.23	71.22	232.78	126.89	125.39	204.9	163.6	79.94
Merged-chr15-97422766-2	chr15	97422278	97423278	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175491.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	15.45	11.06	20.35	18.89	17.73	14.47	14.79	3.98	13.12
Merged-chr14-46130017-1	chr14	46129517	46130517	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45990.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	18.31	19.35	7.4	21.59	14.0	17.68	6.34	3.98	5.0
Merged-chr10-84366163-1	chr10	84365663	84366663	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74308.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	13.73	12.9	14.8	22.94	16.79	27.33	9.51	7.96	11.24
Merged-chr2-113305570-2	chr2	113305074	113306074	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	19842.0	NM_029232	75275.0	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	1.14	3.23	7.4	7.42	0.93	0.0	6.34	3.54	2.5
Merged-chr10-34281582-1	chr10	34281082	34282082	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009433)	promoter-TSS (NM_009433)	-608.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	281.45	250.21	117.47	254.37	160.95	163.17	272.5	317.03	129.28
Merged-chr5-43293315-3	chr5	43292808	43293808	+	809.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57954.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	7.44	3.23	1.85	11.47	3.27	4.82	12.67	3.1	4.37
Merged-chr8-121861533-1	chr8	121861033	121862033	+	809.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NM_145605	234825.0	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	1.72	3.23	2.77	2.7	4.67	8.04	4.22	2.21	3.75
Merged-chr17-47182298-1	chr17	47181798	47182798	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	41356.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	38.33	34.1	28.67	30.36	20.99	35.37	16.9	4.86	3.75
Merged-chr1-156860583-1	chr1	156860083	156861083	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028333, exon 5 of 5)	exon (NM_028333, exon 5 of 5)	21560.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	33.75	30.87	33.3	35.76	28.92	24.92	31.69	30.95	19.36
Merged-chr13-119601502-2	chr13	119601001	119602001	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	B1F1|SINE|Alu	-22318.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	5.72	3.23	0.0	14.84	8.4	16.08	6.34	1.77	13.12
Merged-chr8-104442506-2	chr8	104441996	104442996	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001013380, exon 2 of 13)	exon (NM_001013380, exon 2 of 13)	551.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	98.39	74.65	65.67	90.41	76.97	81.18	98.23	57.04	63.08
Merged-chr15-67636444-1	chr15	67635944	67636944	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	409675.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	2.86	0.46	3.7	2.7	2.8	0.8	0.0	3.1	1.25
Merged-chr11-50240407-1	chr11	50239907	50240907	+	809.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1875.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	14.3	15.67	16.65	18.22	11.2	26.53	20.07	16.36	19.98
Merged-chrX-166663282-3	chrX	166662775	166663775	+	808.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046015, intron 2 of 8)	intron (NR_046015, intron 2 of 8)	1250.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	10.87	13.36	6.47	16.19	6.53	6.43	13.73	9.29	6.25
Merged-chr5-135188159-2	chr5	135187667	135188667	+	808.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011714, intron 1 of 18)	CpG	844.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	125.85	145.61	172.04	101.88	122.69	139.06	149.98	129.11	136.15
Merged-chr9-63044289-2	chr9	63043809	63044809	+	808.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-63430.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	13.16	8.29	7.4	13.49	11.2	9.65	21.12	22.55	15.61
Merged-chr14-120276511-3	chr14	120276011	120277011	+	808.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	842.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	224.25	353.42	169.27	224.01	299.5	187.28	312.63	407.24	176.12
Merged-chr3-79864981-3	chr3	79864473	79865473	+	808.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20957.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	4.58	1.38	9.25	5.4	0.93	3.22	5.28	2.21	6.25
Merged-chr13-51842996-3	chr13	51842488	51843488	+	808.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3687.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	16.59	20.74	21.27	20.24	16.33	32.96	15.84	21.67	19.98
Merged-chr1-64127006-2	chr1	64126499	64127499	+	808.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5610.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	12.59	10.14	1.85	16.87	10.73	4.02	7.39	10.61	5.0
Merged-chr2-173770852-2	chr2	173770367	173771367	+	808.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	33296.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	18.31	19.81	23.12	24.29	13.06	29.74	13.73	25.2	19.98
Merged-chr12-113144603-2	chr12	113144095	113145095	+	808.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024223, intron 5 of 6)	intron (NM_024223, intron 5 of 6)	3990.0	NM_001347443	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.15	3.69	13.87	8.1	4.2	4.82	5.28	2.65	3.75
Merged-chr15-63665706-2	chr15	63665209	63666209	+	808.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143030.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	2.86	2.76	1.85	5.4	5.13	4.82	3.17	7.07	1.25
Merged-chr10-77543354-3	chr10	77542859	77543859	+	808.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008404, intron 3 of 15)	MTE2b|LTR|ERVL-MaLR	13011.0	NM_008404	16414.0	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	42.9	25.34	17.57	35.76	12.6	24.92	33.8	25.65	18.74
Merged-chr6-34966356-3	chr6	34965862	34966862	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	11637.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	18.31	21.2	12.95	26.99	33.59	20.9	16.9	16.36	15.61
Merged-chr8-105714373-3	chr8	105713870	105714870	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6081.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	6.86	5.53	4.62	4.72	6.06	11.25	5.28	2.65	5.0
Merged-chr3-101594481-3	chr3	101593967	101594967	+	808.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144900, intron 2 of 22)	intron (NM_144900, intron 2 of 22)	10240.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	18.88	19.35	15.72	12.14	9.33	24.92	25.35	18.13	17.49
Merged-chr18-34259335-3	chr18	34258830	34259830	+	808.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360979, intron 1 of 15)	B3A|SINE|B2	11636.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	9.15	4.61	7.4	7.42	4.2	3.22	9.51	3.54	5.0
Merged-chr10-13201068-2	chr10	13200575	13201575	+	808.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-7938.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	25.17	32.72	27.75	23.62	17.73	31.35	40.14	35.37	38.1
Merged-chr4-105268534-3	chr4	105268028	105269028	+	808.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111181.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	25.74	22.12	5.55	31.71	14.93	16.08	32.74	24.32	7.49
Merged-chr15-78351821-3	chr15	78351316	78352316	+	808.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007780)	TTS (NM_007780)	3217.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	38.33	35.48	49.02	38.46	19.13	40.19	49.64	37.14	48.09
Merged-chr2-164792556-3	chr2	164792060	164793060	+	808.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133240)	TTS (NM_133240)	6539.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	11.44	13.82	21.27	18.22	10.73	19.29	31.69	27.41	4.37
Merged-chr10-81319672-1	chr10	81319172	81320172	+	808.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1431.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	50.91	43.77	47.17	83.66	67.64	57.07	57.03	60.58	36.22
Merged-chr17-23706441-3	chr17	23705938	23706938	+	808.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19898.0	NM_023058	268930.0	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	50.91	30.41	24.97	16.19	15.86	15.27	19.01	15.03	11.87
Merged-chr12-84855307-3	chr12	84854809	84855809	+	808.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013589, intron 2 of 34)	intron (NM_013589, intron 2 of 34)	-20493.0	NR_028577	100303738.0	Mm.479389	NR_028577	ENSMUSG00000092130	D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	20.02	28.11	27.75	59.38	37.79	75.56	34.85	22.11	21.23
Merged-chr11-8634824-3	chr11	8634333	8635333	+	808.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	29702.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	15.45	13.36	29.6	29.69	20.53	22.51	12.67	6.63	19.36
Merged-chr15-78608999-3	chr15	78608500	78609500	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028195, intron 6 of 12)	MIRb|SINE|MIR	11953.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	22.88	34.56	35.15	27.66	28.46	36.97	54.92	46.87	23.73
Merged-chr1-180318645-3	chr1	180318148	180319148	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11828.0	NM_001081175	320404.0	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	13.73	9.22	9.25	14.17	7.0	5.63	11.62	6.19	5.0
Merged-chr4-145210776-3	chr4	145210280	145211280	+	808.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-15775.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	34.9	36.4	49.95	32.39	17.26	6.43	46.47	48.2	40.59
Merged-chr12-84698736-3	chr12	84698226	84699226	+	808.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033334)	promoter-TSS (NM_001033334)	81.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	5.15	0.92	1.85	1.35	2.33	1.61	3.17	0.44	0.0
Merged-chrX-75874470-1	chrX	75873970	75874970	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_145629, exon 1 of 16)	5' UTR (NM_145629, exon 1 of 16)	104.0	NM_145629	102866.0	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	8.01	8.29	1.85	16.19	7.93	6.43	6.34	3.54	3.12
Merged-chr11-108011260-1	chr11	108010760	108011760	+	808.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 8 of 16)	intron (NM_011101, intron 8 of 16)	14412.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	4.58	3.23	5.55	6.07	2.33	9.65	9.51	11.05	3.75
Merged-chr9-107231804-3	chr9	107231334	107232334	+	808.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153413)	promoter-TSS (NM_153413)	75.0	NM_153413	208869.0	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	4.58	2.76	1.85	4.05	4.2	0.0	4.22	1.77	3.75
Merged-chr2-75964512-4	chr2	75963909	75964909	+	808.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAAAA)n|Simple_repeat|Simple_repeat	13770.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	22.31	18.89	9.25	39.81	32.19	14.47	33.8	18.13	16.24
Merged-chr5-43232049-1	chr5	43231549	43232549	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028417, intron 1 of 7)	intron (NR_028417, intron 1 of 7)	-1414.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	45.19	41.01	33.3	55.33	91.44	52.25	80.27	107.0	33.72
Merged-chr1-162006285-1	chr1	162005785	162006785	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040562, intron 2 of 2)	intron (NR_040562, intron 2 of 2)	1316.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	25.17	19.81	18.5	28.34	16.79	13.66	30.63	27.86	23.73
Merged-chr17-7887277-1	chr17	7886777	7887777	+	808.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	-38723.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	20.59	8.75	12.02	14.84	19.59	22.51	16.9	26.53	13.74
Merged-chr1-171437493-3	chr1	171436987	171437987	+	808.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151523)	promoter-TSS (NR_151523)	-74.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	21.74	6.91	14.8	11.47	6.06	14.47	19.01	11.5	16.86
Merged-chr6-127582137-3	chr6	127581649	127582649	+	808.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	4174.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	3.43	4.61	4.62	9.45	7.93	10.45	16.9	10.17	11.87
Merged-chr17-48267768-3	chr17	48267268	48268268	+	808.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	intron (NM_001033922, intron 2 of 5)	3473.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	36.04	35.48	15.72	31.04	30.32	48.23	38.02	34.05	46.84
Merged-chr15-84968911-3	chr15	84968405	84969405	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	-17282.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	19.45	15.67	22.2	24.96	14.0	12.86	23.24	21.22	24.98
Merged-chr4-105158272-3	chr4	105157726	105158726	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 1 of 5)	CpG	879.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	91.53	92.16	94.35	74.22	85.37	75.56	103.51	72.52	44.97
Merged-chr5-99218389-5	chr5	99217845	99218845	+	808.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	34582.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	14.3	9.68	9.25	16.87	6.06	14.47	16.9	7.07	16.24
Merged-chr13-89883760-1	chr13	89883260	89884260	+	808.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-141248.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.0	3.23	0.0	2.02	4.2	1.61	4.22	2.65	2.5
Merged-chr11-16629826-3	chr11	16629309	16630309	+	808.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-121325.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	10.87	6.45	11.1	8.77	3.27	7.23	2.11	0.44	8.74
Merged-chr16-34416954-2	chr16	34416459	34417459	+	808.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177357, intron 1 of 59)	intron (NM_177357, intron 1 of 59)	97068.0	NM_001164268	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	6.29	5.53	0.0	2.02	4.2	9.65	4.22	3.54	2.5
Merged-chr5-105500491-2	chr5	105499983	105500983	+	808.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18988.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	8.01	8.29	10.17	10.8	6.53	3.22	3.17	2.65	5.0
Merged-chr11-53768986-3	chr11	53768477	53769477	+	808.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NM_001159393	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	65.21	55.75	52.72	52.63	29.39	36.17	49.64	50.85	39.97
Merged-chr5-12206192-3	chr5	12205690	12206690	+	808.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176976.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	13.73	17.97	27.75	18.89	15.39	16.08	14.79	15.48	20.61
Merged-chr17-63871840-3	chr17	63871332	63872332	+	808.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	RMER1B|Other|Other	-6234.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	31.46	43.77	63.82	31.04	29.86	33.76	38.02	48.64	34.97
Merged-chr11-32571296-3	chr11	32570820	32571820	+	808.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	38054.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	16.59	14.75	16.65	20.24	20.53	24.11	27.46	18.13	8.74
Merged-chr9-61983424-3	chr9	61982919	61983919	+	808.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	ORR1E|LTR|ERVL-MaLR	-36620.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	9.72	13.82	16.65	26.99	18.19	26.53	7.39	17.69	16.24
Merged-chr7-27673745-4	chr7	27673247	27674247	+	808.508301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198417)	promoter-TSS (NM_198417)	834.0	NM_001290528	269881.0	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	12.59	12.9	8.32	14.17	7.46	10.45	21.12	9.29	1.87
Merged-chr2-58920297-1	chr2	58919797	58920797	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	165113.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	169.9	194.45	68.45	186.9	170.28	113.33	161.6	193.23	69.95
Merged-chr11-31784495-1	chr11	31783995	31784995	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	40052.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	2.29	2.3	5.55	2.02	3.73	1.61	4.22	0.88	0.0
Merged-chr11-119390984-1	chr11	119390484	119391484	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035453)	TTS (NR_035453)	512.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	231.68	207.35	198.87	209.84	211.33	225.06	238.7	263.09	146.14
Merged-chr8-71660882-3	chr8	71660381	71661381	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 8 of 41)	intron (NM_001029873, intron 8 of 41)	10876.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	3.43	4.15	0.0	3.37	0.0	4.82	5.28	2.21	7.49
Merged-chr17-22417726-2	chr17	22417195	22418195	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6507.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	3.43	2.3	3.7	2.7	3.27	0.0	3.17	3.54	4.37
Merged-chr6-34479190-1	chr6	34478690	34479690	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007563, intron 1 of 2)	intron (NM_007563, intron 1 of 2)	2834.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	7.44	6.45	3.7	9.45	3.73	4.82	6.34	5.31	8.12
Merged-chrX-142718111-1	chrX	142717611	142718611	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	intron (NR_152447, intron 2 of 8)	-20889.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	9.72	10.6	13.87	11.47	14.46	12.06	11.62	12.38	3.75
Merged-chr11-83125108-2	chr11	83124627	83125627	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8307.0	NM_011407	20555.0	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	2.86	7.83	1.85	6.07	4.2	4.82	2.11	1.33	2.5
Merged-chr11-115161167-1	chr11	115160667	115161667	+	808.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163753, exon 9 of 9)	3' UTR (NM_001163753, exon 9 of 9)	-2174.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	78.37	64.97	70.3	66.8	44.78	50.64	78.16	105.24	57.46
Merged-chr9-124143165-2	chr9	124142661	124143661	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	21618.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	95.53	107.36	91.57	120.77	82.57	73.14	103.51	163.6	77.44
Merged-chr9-111289700-2	chr9	111289199	111290199	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	17854.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	91.53	85.71	37.92	85.01	70.91	71.54	114.07	122.48	68.07
Merged-chr16-91764223-2	chr16	91763716	91764716	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	34845.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	37.18	23.5	14.8	23.62	19.13	20.09	26.4	11.05	7.49
Merged-chr7-132799899-1	chr7	132799399	132800399	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	-12964.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	16.02	5.07	8.32	29.69	16.33	4.82	2.11	5.75	3.75
Merged-chr2-132113822-1	chr2	132113322	132114322	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	intron (NM_001355430, intron 1 of 15)	31286.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	54.35	93.54	46.25	52.63	54.58	38.58	61.26	108.33	46.22
Merged-chrX-93690923-1	chrX	93690423	93691423	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	intron (NM_211138, intron 1 of 7)	15811.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	5.72	5.07	3.7	7.42	2.33	11.25	9.51	3.1	1.25
Merged-chr7-115063088-2	chr7	115062602	115063602	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111828.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	7.44	5.07	14.8	4.05	4.2	6.43	7.39	1.33	8.74
Merged-chr10-12612597-1	chr10	12612097	12613097	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	249138.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.29	2.76	0.0	5.4	2.33	0.0	2.11	4.42	0.0
Merged-chr8-122022440-2	chr8	122021948	122022948	+	808.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016812, intron 12 of 13)	intron (NM_016812, intron 12 of 13)	44424.0	NR_106096	102466915.0		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	13.16	5.07	7.4	8.77	7.46	6.43	4.22	4.42	6.25
Merged-chr7-137314510-2	chr7	137314005	137315005	+	808.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010096)	promoter-TSS (NM_010096)	-60.0	NM_010096	13593.0	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	2.29	0.0	0.0	5.4	0.0	2.41	0.0	0.0	0.0
Merged-chr11-4199047-2	chr11	4198554	4199554	+	808.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	MIRc|SINE|MIR	12221.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	11.44	11.52	5.55	18.89	11.66	7.23	11.62	11.5	8.74
Merged-chr18-78021440-3	chr18	78020939	78021939	+	808.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 36 of 43)	intron (NM_001195633, intron 36 of 43)	35829.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	7.44	10.6	3.7	29.01	13.53	10.45	32.74	21.22	13.12
Merged-chr18-56469378-3	chr18	56468845	56469845	+	808.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	37213.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	12.01	6.45	7.4	4.72	5.6	12.86	9.51	5.75	6.25
Merged-chr1-166459089-3	chr1	166458593	166459593	+	808.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3605.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	8.01	5.07	1.85	9.45	0.93	3.22	16.9	9.73	6.25
Merged-chr8-104099539-3	chr8	104099042	104100042	+	808.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131138, intron 1 of 2)	intron (NR_131138, intron 1 of 2)	-2083.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	19.45	10.6	0.0	6.07	11.2	12.06	10.56	7.96	7.49
Merged-chr8-122465128-3	chr8	122464653	122465653	+	808.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033142)	TTS (NM_001033142)	-4461.0	NM_013914	30927.0	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	9.15	4.61	12.95	6.07	7.46	11.25	40.14	19.01	9.99
Merged-chrX-167333062-3	chrX	167332552	167333552	+	808.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2481.0	NM_001290756	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	30.89	41.01	28.67	38.46	29.86	16.08	42.25	43.33	28.1
Merged-chr7-35121034-5	chr7	35120451	35121451	+	808.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001287523, exon 1 of 1)	3' UTR (NM_001287523, exon 1 of 1)	1658.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	81.8	71.42	51.8	76.24	60.18	69.93	79.21	63.67	60.58
Merged-chr6-21955496-3	chr6	21955002	21956002	+	808.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	5887.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	60.64	52.99	23.12	68.15	69.51	38.58	59.15	50.41	29.35
Merged-chr11-71849609-3	chr11	71849073	71850073	+	808.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	90549.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	45.76	67.27	42.55	76.24	83.51	35.37	70.76	86.22	24.98
Merged-chrX-36328493-2	chrX	36327991	36328991	+	808.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028894)	promoter-TSS (NM_028894)	82.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	4.58	4.61	3.7	10.12	9.33	11.25	6.34	7.07	4.37
Merged-chr17-43061459-2	chr17	43060956	43061956	+	808.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	44901.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	92.1	89.85	37.0	100.53	82.11	72.34	29.57	25.2	26.23
Merged-chr13-35955995-2	chr13	35955492	35956492	+	808.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11914.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	31.46	23.04	40.7	27.66	21.93	45.82	8.45	13.27	8.74
Merged-chr15-34775918-2	chr15	34775423	34776423	+	808.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61432.0	NM_181317	16539.0	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	6.29	0.46	0.0	4.05	1.4	1.61	9.51	4.86	8.74
Merged-chr1-170510753-1	chr1	170510253	170511253	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 2 of 9)	MIRc|SINE|MIR	46357.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	5.72	2.3	0.0	5.4	4.67	8.84	4.22	3.54	5.0
Merged-chr8-46142841-3	chr8	46142331	46143331	+	808.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18685.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	81.23	134.55	94.35	75.57	80.24	77.16	85.55	110.1	69.32
Merged-chr16-15862401-1	chr16	15861901	15862901	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029354, exon 2 of 3)	exon (NM_029354, exon 2 of 3)	968.0	NM_029354	72083.0	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	16.59	19.81	12.95	22.94	30.79	13.66	24.29	17.69	13.12
Merged-chr3-93520325-1	chr3	93519825	93520825	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016740)	promoter-TSS (NM_016740)	-171.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	1.72	3.23	1.85	4.05	7.93	8.04	1.06	0.88	3.75
Merged-chr2-90501905-1	chr2	90501405	90502405	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-22731.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	18.31	27.65	34.22	16.19	16.79	18.49	39.08	30.51	29.98
Merged-chr11-69365095-3	chr11	69364611	69365611	+	808.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146019, intron 1 of 39)	intron (NM_146019, intron 1 of 39)	4315.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	53.77	45.16	61.05	43.86	39.65	88.42	62.31	59.25	49.96
Merged-chr14-123837579-1	chr14	123837079	123838079	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145467, intron 3 of 10)	intron (NM_145467, intron 3 of 10)	-150056.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	1.14	2.3	7.4	0.67	3.73	1.61	3.17	7.07	8.12
Merged-chr9-118723118-1	chr9	118722618	118723618	+	808.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	11426.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	11.44	9.22	17.57	18.22	12.13	30.54	15.84	15.48	9.99
Merged-chr4-99224506-3	chr4	99224006	99225006	+	808.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145967, exon 7 of 11)	exon (NM_001145967, exon 7 of 11)	30359.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	78.94	107.36	68.45	80.29	110.1	72.34	154.2	147.68	70.57
Merged-chr4-154856306-3	chr4	154855804	154856804	+	808.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172878, exon 1 of 7)	5' UTR (NM_172878, exon 1 of 7)	104.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	6.29	4.15	3.7	16.19	14.0	20.09	5.28	1.77	2.5
Merged-chr5-135705527-3	chr5	135705045	135706045	+	808.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	B4A|SINE|B4	16400.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	12.01	11.52	18.5	22.94	22.39	27.33	20.07	18.57	16.86
Merged-chr14-34662440-2	chr14	34661942	34662942	+	808.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8868.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	2.29	4.61	3.7	11.47	6.06	5.63	5.28	2.21	6.87
Merged-chr10-117983511-1	chr10	117983011	117984011	+	808.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	58052.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	35.47	39.63	21.27	44.53	29.86	52.25	35.91	42.01	19.36
Merged-chr9-107551618-3	chr9	107551207	107552207	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053253)	TTS (NM_053253)	152.0	NM_001243748	56289.0	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	6.29	3.69	15.72	7.42	7.0	4.82	11.62	4.42	1.25
Merged-chr10-68844854-3	chr10	68844358	68845358	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121112.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.0	1.38	1.85	2.7	1.4	1.61	4.22	2.65	5.62
Merged-chr16-35918834-3	chr16	35918329	35919329	+	808.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19641.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	115.55	142.84	74.0	124.15	100.3	102.08	190.11	174.21	88.06
Merged-chr19-55688749-3	chr19	55688266	55689266	+	808.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	13438.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	50.91	32.25	42.55	29.69	20.53	18.49	57.03	68.54	40.59
Merged-chr1-77281943-1	chr1	77281443	77282443	+	808.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	214825.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	12.59	31.79	20.35	14.84	8.4	12.06	3.17	10.61	5.62
Merged-chr7-123399065-3	chr7	123398579	123399579	+	808.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025304, intron 1 of 10)	intron (NM_025304, intron 1 of 10)	-8738.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	14.87	10.14	3.7	10.12	7.46	5.63	7.39	7.96	9.99
Merged-chr13-74040151-2	chr13	74039651	74040651	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028959, exon 11 of 12)	exon (NM_028959, exon 11 of 12)	22134.0	NM_028959	74470.0	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	5.72	6.45	5.55	4.05	4.67	5.63	5.28	0.0	7.49
Merged-chr1-175626263-2	chr1	175625867	175626867	+	808.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010209)	promoter-TSS (NM_010209)	-732.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	27.46	46.54	14.8	49.93	43.39	38.58	32.74	49.08	20.61
Merged-chr1-151927612-2	chr1	151927104	151928104	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	B1_Mur1|SINE|Alu	162716.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	29.75	52.07	24.05	35.76	34.06	32.15	14.79	24.32	16.24
Merged-chr8-86870936-2	chr8	86870434	86871434	+	808.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	MTE2a|LTR|ERVL-MaLR	14324.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	50.91	46.08	64.75	19.57	27.06	20.9	39.08	49.96	26.23
Merged-chr19-4398098-3	chr19	4397671	4398671	+	808.161926	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1094.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	60.64	27.65	40.7	61.4	45.72	35.37	67.6	45.99	33.1
Merged-chr8-33606600-4	chr8	33606068	33607068	+	808.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	RMER6B|LTR|ERVK	6947.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	10.3	13.36	16.65	12.82	17.73	28.13	55.98	36.26	29.35
Merged-chr10-120202371-4	chr10	120201914	120202914	+	808.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028679)	promoter-TSS (NM_028679)	-284.0	NM_001359184	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	28.6	47.92	30.52	49.93	34.06	61.89	89.78	54.83	51.21
Merged-chr11-69935691-3	chr11	69935142	69936142	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347634)	promoter-TSS (NM_001347634)	-257.0	NM_016875	53422.0	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	10.3	1.38	2.77	10.8	4.67	3.22	8.45	3.1	6.87
Merged-chr14-14349720-6	chr14	14349221	14350221	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 5 of 11)	intron (NM_008369, intron 5 of 11)	3226.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	57.21	65.89	49.95	42.51	15.39	33.76	48.58	55.27	26.85
Merged-chr17-81616602-3	chr17	81616113	81617113	+	808.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	121774.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	20.02	29.49	29.6	26.31	20.06	21.7	10.56	17.69	33.72
Merged-chr13-3742519-2	chr13	3741984	3742984	+	808.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61834.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.0	8.75	2.77	7.42	7.93	4.82	3.17	1.77	3.75
Merged-chr18-84590381-3	chr18	84589847	84590847	+	808.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033341)	promoter-TSS (NM_001033341)	-843.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	160.18	196.29	120.24	156.53	138.09	135.84	151.03	195.0	93.68
Merged-chr13-23538447-3	chr13	23537944	23538944	+	808.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	3026.0	NM_145073	97908.0	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	10.3	2.3	5.55	4.72	0.93	11.25	6.34	6.63	9.99
Merged-chr12-25389295-3	chr12	25388828	25389828	+	808.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	260154.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.15	1.38	6.47	4.05	5.13	6.43	6.34	1.33	3.75
Merged-chr7-89500070-1	chr7	89499570	89500570	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17516.0	NM_029614	76453.0	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	5.72	2.3	3.7	0.67	2.33	0.0	2.11	3.98	1.25
Merged-chr18-11833001-3	chr18	11832493	11833493	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	-6281.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.86	10.14	8.32	6.75	8.4	17.68	11.62	6.19	10.62
Merged-chr8-128590505-1	chr8	128590005	128591005	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-95149.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	11.44	12.9	7.4	12.14	13.53	11.25	14.79	7.07	16.86
Merged-chr17-79442790-1	chr17	79442290	79443290	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35095.0	NR_033463	74622.0	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	2.86	0.46	7.4	0.0	4.67	4.02	31.69	40.24	22.48
Merged-chr9-37301907-1	chr9	37301407	37302407	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081429, intron 12 of 15)	intron (NM_001081429, intron 12 of 15)	-46169.0	NM_001145960	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	5.15	1.84	7.4	0.67	3.27	0.0	3.17	1.77	0.0
Merged-chr15-13384931-1	chr15	13384431	13385431	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-211256.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.14	9.22	0.0	0.67	2.33	6.43	2.11	8.84	3.75
Merged-chr2-60283138-1	chr2	60282638	60283638	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	intron (NM_025422, intron 1 of 4)	1346.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	113.27	134.09	96.2	142.37	110.56	124.59	158.43	125.58	90.56
Merged-chr9-45121944-1	chr9	45121444	45122444	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014761, intron 1 of 3)	intron (NM_001014761, intron 1 of 3)	4068.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	6.29	7.83	7.4	14.84	4.67	3.22	7.39	2.21	3.75
Merged-chr15-87624147-1	chr15	87623647	87624647	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252310, intron 1 of 3)	CpG	-1083.0	NM_134096	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.29	0.46	0.0	0.0	3.27	0.0	0.0	0.0	0.0
Merged-chr7-104287621-1	chr7	104287121	104288121	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310602, intron 1 of 7)	URR1A|DNA|hAT-Charlie	485.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	1.14	0.0	0.0	0.0	0.0	0.0	195.39	273.7	111.79
Merged-chr17-72890292-2	chr17	72889799	72890799	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28006.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.0	2.3	9.25	7.42	0.93	1.61	3.17	1.77	0.0
Merged-chr15-50361543-1	chr15	50361043	50362043	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	527506.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	41.19	55.29	40.7	77.59	71.38	54.66	73.93	90.64	42.47
Merged-chr2-178013492-2	chr2	178013004	178014004	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-9780.0	NM_001177400	626848.0	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.57	1.38	5.55	7.42	0.47	3.22	6.34	0.44	1.87
Merged-chr2-170055693-1	chr2	170055193	170056193	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15085.0	NR_033634	100043910.0	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	5.72	1.38	1.85	1.35	2.8	4.02	6.34	4.86	2.5
Merged-chr12-108931938-1	chr12	108931438	108932438	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	37666.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	4.58	1.84	7.4	16.87	13.53	14.47	8.45	4.42	1.87
Merged-chr11-22286511-2	chr11	22285985	22286985	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252515, intron 1 of 24)	intron (NM_001252515, intron 1 of 24)	310.0	NM_153078	216565.0	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	10.3	5.99	7.4	25.64	9.8	10.45	21.12	5.31	6.25
Merged-chr1-64358529-1	chr1	64358029	64359029	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-174275.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	21.74	23.96	5.55	9.45	2.33	6.43	4.22	1.33	0.0
Merged-chr6-94269380-1	chr6	94268880	94269880	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	MTC|LTR|ERVL-MaLR	14537.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.0	2.3	5.55	4.72	0.93	3.22	4.22	1.33	1.25
Merged-chr2-165015027-1	chr2	165014527	165015527	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144892, intron 2 of 7)	intron (NM_144892, intron 2 of 7)	19752.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	6.29	2.76	4.62	6.07	2.8	0.0	5.28	3.1	3.75
Merged-chr2-129504481-2	chr2	129503990	129504990	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	32112.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	9.72	6.45	7.4	8.1	7.46	4.82	19.01	4.42	5.62
Merged-chr17-9773937-2	chr17	9773438	9774438	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045433, intron 2 of 3)	intron (NR_045433, intron 2 of 3)	1928.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	5.15	4.61	0.0	10.8	3.73	11.25	3.17	5.31	2.5
Merged-chr2-126427833-1	chr2	126427333	126428333	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 7 of 27)	intron (NM_001359975, intron 7 of 27)	63720.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	9.72	6.91	5.55	6.75	8.86	12.86	3.17	7.96	2.5
Merged-chr7-47007387-2	chr7	47006893	47007893	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175318, intron 1 of 5)	intron (NM_175318, intron 1 of 5)	1021.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	74.37	71.42	32.37	68.15	62.05	60.28	122.52	97.72	50.59
Merged-chr15-27960661-2	chr15	27960152	27961152	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	ORR1D2|LTR|ERVL-MaLR	65196.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.72	4.15	12.95	3.37	7.46	13.66	7.39	4.42	7.49
Merged-chrX-57712732-2	chrX	57712242	57713242	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208985.0	NM_001033360	245424.0	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	7.44	5.53	6.47	6.75	6.53	4.82	6.34	11.94	2.5
Merged-chr11-29570969-1	chr11	29570469	29571469	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163521, intron 9 of 11)	RLTR20C2_MM|LTR|ERVK	-22929.0	NM_001033865	78294.0	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	2.29	3.69	1.85	9.45	1.87	4.82	3.17	1.77	0.0
Merged-chr16-36745211-1	chr16	36744711	36745711	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	39751.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	14.87	12.9	3.7	14.84	14.0	16.08	10.56	7.07	9.99
Merged-chr2-120096412-1	chr2	120095912	120096912	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	58163.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	5.72	5.53	25.9	18.89	12.6	14.47	13.73	7.07	5.0
Merged-chr17-50120296-2	chr17	50119816	50120816	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	70181.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	3.43	5.53	3.7	8.1	9.33	8.04	44.36	46.87	21.23
Merged-chr13-102240218-3	chr13	102239692	102240692	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-453355.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	14.87	14.75	8.32	11.47	7.93	6.43	4.22	6.63	5.0
Merged-chr5-66136017-1	chr5	66135517	66136517	+	808.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	14961.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	14.87	8.29	15.72	20.24	17.73	20.9	25.35	19.01	14.36
Merged-chr7-19475137-1	chr7	19474637	19475637	+	808.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16643.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	8.58	8.29	8.32	12.82	8.4	9.65	50.7	87.99	21.86
Merged-chr13-93354610-1	chr13	93354110	93355110	+	808.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147176, intron 4 of 9)	B3A|SINE|B2	46576.0	NM_152134	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	24.03	27.19	12.95	10.8	7.0	12.86	12.67	5.75	11.24
Merged-chr16-4630112-3	chr16	4629614	4630614	+	807.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030205, intron 23 of 27)	intron (NM_030205, intron 23 of 27)	-5168.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	19.45	10.6	13.87	20.24	7.0	16.08	22.18	15.92	18.74
Merged-chr15-84072352-3	chr15	84071862	84072862	+	807.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7013.0	NM_029946	77627.0	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	4.58	0.92	0.0	5.4	0.0	3.22	2.11	1.77	1.87
Merged-chr11-101986223-3	chr11	101985727	101986727	+	807.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029287)	promoter-TSS (NM_029287)	-829.0	NM_029287	75437.0	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	Cfap97d1	RIKEN cDNA 1700006E09 gene	protein-coding	17.16	7.37	0.0	6.75	6.53	2.41	5.28	5.75	3.75
Merged-chr15-88876499-3	chr15	88876000	88877000	+	807.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14306.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	6.86	1.38	5.55	6.75	3.73	2.41	2.11	2.65	0.0
Merged-chr6-70875405-3	chr6	70874904	70875904	+	807.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30889.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	28.03	26.26	25.9	20.92	23.33	12.06	42.25	37.14	14.99
Merged-chr2-117344137-3	chr2	117343635	117344635	+	807.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	28.6	41.47	30.52	35.09	19.13	22.51	49.64	42.45	21.23
Merged-chr3-84135565-2	chr3	84135077	84136077	+	807.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029797, intron 3 of 7)	intron (NM_029797, intron 3 of 7)	20209.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	8.01	2.3	9.25	6.07	6.53	4.02	5.28	6.63	5.0
Merged-chr15-99664679-3	chr15	99664186	99665186	+	807.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5691.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	4.58	1.84	0.0	2.02	0.93	4.82	5.28	4.42	0.0
Merged-chr18-89089147-3	chr18	89088637	89089637	+	807.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175542, intron 35 of 48)	ORR1E|LTR|ERVL-MaLR	-108290.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.57	3.69	8.32	2.7	5.13	0.8	4.22	3.98	1.25
Merged-chrX-56425444-2	chrX	56424926	56425926	+	807.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29413.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	2.29	6.45	1.85	4.72	3.27	3.22	7.39	7.52	5.62
Merged-chr4-134852738-3	chr4	134852184	134853184	+	807.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355499, intron 1 of 11)	CpG	661.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	144.73	69.12	50.87	132.24	58.31	60.28	105.62	46.43	54.33
Merged-chr1-89016021-3	chr1	89015523	89016523	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040471)	promoter-TSS (NR_040471)	-90.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	4.58	2.76	7.4	2.7	5.6	4.82	9.51	6.19	9.99
Merged-chr4-130829490-1	chr4	130828990	130829990	+	807.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36953.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	24.6	12.9	14.8	21.59	13.53	15.27	19.01	15.48	7.49
Merged-chr9-116137884-3	chr9	116137369	116138369	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	MLT2C1|LTR|ERVL	37494.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	105.26	109.67	51.8	179.47	137.15	77.16	77.1	60.13	33.72
Merged-chr2-152197447-3	chr2	152196938	152197938	+	807.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29402.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	1.72	0.46	0.0	0.0	1.87	0.0	2.11	0.44	1.25
Merged-chr15-76196790-3	chr15	76196274	76197274	+	807.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	-1064.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	4.0	3.23	2.77	5.4	4.67	0.0	6.34	2.65	7.49
Merged-chr2-145889427-3	chr2	145888899	145889899	+	807.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13842.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	127.57	127.18	91.57	109.3	94.7	134.23	154.2	150.78	121.78
Merged-chr10-81409584-3	chr10	81409073	81410073	+	807.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152732)	promoter-TSS (NR_152732)	-2.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	94.96	73.73	37.0	132.24	73.71	96.45	118.29	118.94	59.95
Merged-chr10-111507127-2	chr10	111506627	111507627	+	807.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009344, exon 1 of 2)	exon (NM_009344, exon 1 of 2)	841.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	38.33	31.33	12.02	48.58	20.53	21.7	23.24	14.59	16.86
Merged-chr14-57680136-3	chr14	57679645	57680645	+	807.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15189.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	2.29	5.07	3.7	2.02	1.87	0.0	5.28	5.75	1.87
Merged-chr2-124611400-3	chr2	124610903	124611903	+	807.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	1107.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	183.63	215.65	153.54	214.56	206.2	205.77	262.99	318.36	148.64
Merged-chr3-148810715-2	chr3	148810213	148811213	+	807.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	143922.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.58	17.05	21.27	16.19	11.66	4.02	4.22	5.31	3.12
Merged-chr14-40917887-3	chr14	40917410	40918410	+	807.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 3 of 8)	intron (NM_145928, intron 3 of 8)	-24945.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	7.44	5.07	12.02	8.77	2.8	4.82	8.45	1.77	7.49
Merged-chr1-173934639-3	chr1	173934129	173935129	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 5 of 9)	intron (NM_001302649, intron 5 of 9)	7863.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	17.16	17.51	11.1	41.83	28.46	32.15	12.67	19.9	7.49
Merged-chr3-69606661-3	chr3	69606140	69607140	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7680.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	45.19	43.77	27.75	56.0	42.45	49.83	35.91	31.84	43.72
Merged-chr16-37869387-3	chr16	37868872	37869872	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177093, intron 1 of 3)	intron (NM_177093, intron 1 of 3)	972.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	165.32	191.69	137.82	155.86	145.55	147.9	188.0	170.23	146.14
Merged-chr5-45491614-3	chr5	45491087	45492087	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-1787.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	11.44	12.9	15.72	23.62	18.66	13.66	22.18	15.03	14.99
Merged-chr9-78526238-1	chr9	78525738	78526738	+	807.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44514.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	26.89	28.57	38.85	35.76	23.33	40.19	19.01	21.67	9.37
Merged-chr2-84358821-3	chr2	84358313	84359313	+	807.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	66453.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	12.59	12.9	1.85	10.12	13.06	16.08	12.67	8.84	8.12
Merged-chr1-85598815-3	chr1	85598282	85599282	+	807.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030194)	promoter-TSS (NM_030194)	28.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	34.9	35.02	24.97	37.78	15.39	24.92	27.46	20.78	19.98
Merged-chr13-33959994-2	chr13	33959490	33960490	+	807.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040707, exon 5 of 5)	non-coding (NR_040707, exon 5 of 5)	-4669.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	11.44	11.98	12.95	10.12	12.6	20.09	7.39	8.84	20.61
Merged-chr15-25900733-3	chr15	25900236	25901236	+	807.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 3 of 8)	intron (NM_001034851, intron 3 of 8)	-32816.0	NM_001277318	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	8.01	3.69	7.4	2.7	0.93	1.61	2.11	0.88	0.0
Merged-chr2-155405889-3	chr2	155405395	155406395	+	807.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019825, exon 10 of 14)	exon (NM_019825, exon 10 of 14)	24039.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	105.26	112.43	60.12	103.91	90.5	99.67	60.2	66.77	53.08
Merged-chr9-123259896-3	chr9	123259430	123260430	+	807.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	859.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	7.44	0.46	3.7	0.67	3.73	2.41	2.11	0.44	0.0
Merged-chr12-69977660-3	chr12	69977177	69978177	+	807.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 2 of 4)	MLT1F1|LTR|ERVL-MaLR	9325.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	17.73	6.45	3.7	16.87	17.26	10.45	28.52	14.59	13.74
Merged-chr3-116255499-2	chr3	116255006	116256006	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2022.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	12.59	5.07	6.47	8.1	4.67	3.22	4.22	2.65	9.99
Merged-chr9-96525299-2	chr9	96524803	96525803	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46628.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.29	5.07	11.1	2.02	1.4	1.61	11.62	9.29	23.73
Merged-chr8-90829785-2	chr8	90829262	90830262	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	927.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	32.61	34.1	45.32	22.27	17.26	24.11	50.7	33.6	27.48
Merged-chr11-79905575-1	chr11	79905075	79906075	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	56812.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	9.72	6.45	10.17	10.8	18.19	24.92	14.79	5.75	8.74
Merged-chr10-5289588-1	chr10	5289088	5290088	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 54 of 145)	intron (NM_001347711, intron 54 of 145)	-94881.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	13.73	5.07	11.1	22.94	29.39	15.27	12.67	8.4	5.0
Merged-chr3-103587517-2	chr3	103587016	103588016	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276681, exon 3 of 8)	exon (NM_001276681, exon 3 of 8)	11390.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	9.15	8.75	17.57	13.49	8.86	8.04	16.9	7.52	12.49
Merged-chr1-106174853-1	chr1	106174353	106175353	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	2984.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	14.3	4.61	6.47	4.05	8.4	5.63	2.11	7.07	2.5
Merged-chr12-85534383-2	chr12	85533894	85534894	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	60504.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	70.93	65.89	32.37	63.42	62.51	68.32	34.85	36.26	47.46
Merged-chr10-84424056-2	chr10	84423575	84424575	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	16396.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	36.04	30.87	25.9	37.78	18.19	29.74	31.69	24.32	17.49
Merged-chr4-95192241-2	chr4	95191745	95192745	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-140023.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	28.6	32.25	36.07	27.66	29.39	57.87	32.74	27.41	26.85
Merged-chr19-15201049-1	chr19	15200549	15201549	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-602866.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.43	3.23	16.65	5.4	6.53	7.23	9.51	0.88	11.24
Merged-chr5-9162382-1	chr5	9161882	9162882	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011806)	promoter-TSS (NM_011806)	-606.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	70.93	62.21	39.77	74.89	48.98	60.28	66.54	68.54	48.09
Merged-chr1-40475915-1	chr1	40475415	40476415	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 4 of 9)	intron (NM_001161842, intron 4 of 9)	9909.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	4.58	6.45	3.7	10.8	4.2	4.82	2.11	1.77	5.62
Merged-chr3-130715325-2	chr3	130714756	130715756	+	807.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5812.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	28.6	48.38	11.1	43.18	30.32	30.54	25.35	30.51	16.24
Merged-chr1-193145346-3	chr1	193144854	193145854	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7758.0	NM_016851	54139.0	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	7.44	5.53	0.0	5.4	2.8	6.43	5.28	1.33	8.74
Merged-chr12-100421887-4	chr12	100421412	100422412	+	807.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98910.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	29.17	35.48	14.8	56.0	52.72	48.23	31.69	34.49	29.98
Merged-chr3-104781014-3	chr3	104780470	104781470	+	807.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-86.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	2.29	4.15	3.7	7.42	6.53	4.82	4.22	5.75	3.75
Merged-chr5-137305928-3	chr5	137305402	137306402	+	807.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359602, intron 2 of 19)	B3A|SINE|B2	1772.0	NM_031405	83701.0	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	21.17	19.35	15.72	18.22	8.4	12.06	15.84	15.92	14.36
Merged-chr11-109367031-3	chr11	109366538	109367538	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-3384.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	78.94	66.81	71.22	72.19	86.3	61.89	138.36	142.38	59.33
Merged-chr13-23425671-3	chr13	23425152	23426152	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Tyr-TAC|tRNA|tRNA	-1786.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	18.88	23.04	15.72	14.84	8.4	12.86	15.84	22.99	8.12
Merged-chr18-36304532-3	chr18	36304037	36305037	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4436.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	16.59	5.07	1.85	6.75	3.27	6.43	5.28	5.75	3.12
Merged-chr13-95949528-3	chr13	95949036	95950036	+	807.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-57614.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	34.32	34.1	46.25	39.13	21.46	35.37	40.14	46.43	39.97
Merged-chr7-38025547-2	chr7	38025046	38026046	+	807.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-5994.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	35.47	31.33	38.85	25.64	19.13	18.49	6.34	0.88	2.5
Merged-chr7-12881672-1	chr7	12881172	12882172	+	807.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153802, intron 1 of 3)	intron (NM_153802, intron 1 of 3)	494.0	NM_153802	243833.0	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	20.02	23.5	10.17	18.22	26.59	26.53	25.35	18.13	21.23
Merged-chr9-55259970-3	chr9	55259467	55260467	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	23658.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	20.02	17.97	5.55	29.01	30.32	29.74	15.84	15.92	12.49
Merged-chr5-90655553-3	chr5	90655064	90656064	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15037.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	39.47	27.65	12.95	37.11	18.19	22.51	12.67	16.8	18.11
Merged-chr4-16160228-2	chr4	16159719	16160719	+	807.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3424.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	113.27	134.55	114.69	102.56	86.3	90.83	91.89	110.98	57.46
Merged-chr17-5495698-3	chr17	5495253	5496253	+	807.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	3153.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	56.63	52.53	30.52	60.72	61.58	39.39	51.75	46.43	23.11
Merged-chr6-129275486-3	chr6	129274989	129275989	+	807.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033122)	promoter-TSS (NM_001033122)	-120.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	5.72	3.23	3.7	6.07	7.46	9.65	8.45	5.31	5.0
Merged-chr9-18453202-3	chr9	18452706	18453706	+	807.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028935)	TTS (NM_028935)	20353.0	NM_028935	72230.0	Mm.289689	NM_028160	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	3.43	10.14	10.17	8.77	7.0	10.45	9.51	8.84	7.49
Merged-chr2-128701870-2	chr2	128701374	128702374	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	2959.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	42.9	58.98	48.1	82.32	66.71	51.44	71.82	67.21	40.59
Merged-chr13-111821927-1	chr13	111821427	111822427	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-12934.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.86	1.84	5.55	5.4	7.0	9.65	8.45	7.96	7.49
Merged-chr10-63153807-1	chr10	63153307	63154307	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182992, intron 6 of 19)	intron (NM_182992, intron 6 of 19)	50145.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	9.15	9.22	3.7	4.05	4.67	4.82	6.34	4.86	1.25
Merged-chr10-80940694-4	chr10	80940180	80941180	+	807.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10589.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	17.73	14.75	14.8	33.74	19.59	16.88	31.69	15.48	9.37
Merged-chr7-110769403-1	chr7	110768903	110769903	+	807.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276301, intron 1 of 14)	intron (NM_001276301, intron 1 of 14)	1197.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	21.17	25.34	13.87	41.16	37.79	57.87	40.14	31.39	38.1
Merged-chr4-150397470-3	chr4	150396980	150397980	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	115564.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	17.73	12.44	11.1	20.24	12.6	17.68	27.46	19.46	8.74
Merged-chrX-7733885-3	chrX	7733388	7734388	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207202, exon 10 of 10)	exon (NM_207202, exon 10 of 10)	5317.0	NM_138602	54637.0	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.57	0.92	0.0	0.67	0.93	0.8	2.11	1.33	0.0
Merged-chr7-80776294-3	chr7	80775797	80776797	+	807.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	RSINE1|SINE|B4	27034.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	181.91	192.15	143.37	217.93	210.4	184.87	253.48	347.99	138.02
Merged-chr11-78194885-3	chr11	78194398	78195398	+	807.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045516, intron 1 of 3)	intron (NM_001045516, intron 1 of 3)	1506.0	NM_001045516	216974.0	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	8.58	2.76	12.95	10.8	5.6	9.65	7.39	7.07	1.25
Merged-chr2-71644245-3	chr2	71643752	71644752	+	807.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-75165.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	2.29	1.84	1.85	7.42	7.0	6.43	11.62	1.33	6.25
Merged-chr12-95695544-3	chr12	95695047	95696047	+	807.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	CpG	3321.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	3.43	2.3	0.0	4.72	2.8	0.0	1.06	0.88	6.25
Merged-chr3-132087248-3	chr3	132086758	132087758	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	1966.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.57	1.38	3.7	4.72	0.0	0.0	3.17	1.77	1.87
Merged-chr1-180812626-3	chr1	180812108	180813108	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008210, intron 1 of 3)	CpG	997.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	125.85	245.14	162.79	141.02	160.01	131.82	172.16	238.77	163.0
Merged-chr6-43848094-1	chr6	43847594	43848594	+	807.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR31A_MM|LTR|ERVK	-181816.0	NM_001311111	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	18.88	18.43	20.35	24.96	23.33	54.66	15.84	7.52	8.74
Merged-chr1-120073122-3	chr1	120072619	120073619	+	807.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019432, intron 1 of 1)	intron (NM_019432, intron 1 of 1)	661.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	157.89	148.37	167.42	157.21	169.34	126.19	328.47	342.68	141.14
Merged-chr9-66213002-2	chr9	66212494	66213494	+	807.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	54768.0	NM_010019	13143.0	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	14.3	8.29	2.77	10.8	3.73	1.61	19.01	8.4	1.25
Merged-chr1-177711571-3	chr1	177711072	177712072	+	807.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-18242.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	17.16	7.83	1.85	10.8	5.13	12.06	17.96	8.84	13.74
Merged-chr18-82475952-3	chr18	82475448	82476448	+	807.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	825.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	13.16	18.89	5.55	18.89	13.06	5.63	9.51	5.75	5.62
Merged-chr18-20745722-4	chr18	20745192	20746192	+	807.104187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019737, exon 1 of 9)	5' UTR (NM_019737, exon 1 of 9)	712.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	195.64	122.57	123.02	237.5	152.55	207.38	257.71	161.39	138.02
Merged-chr4-141148560-4	chr4	141148052	141149052	+	807.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	CpG	630.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	267.15	238.69	183.14	217.26	240.72	190.5	215.46	250.71	170.5
Merged-chr7-99531974-4	chr7	99531450	99532450	+	807.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3536.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	46.34	49.3	40.7	35.76	34.06	39.39	29.57	34.93	33.1
Merged-chr7-90018658-3	chr7	90018181	90019181	+	807.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20B1|LTR|ERVK	-10478.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	76.08	105.98	77.7	90.41	77.44	89.22	92.94	96.83	102.42
Merged-chr2-150672172-3	chr2	150671670	150672670	+	807.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3930.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	36.61	23.04	29.6	70.17	41.05	57.87	33.8	36.26	18.11
Merged-chr5-31814265-3	chr5	31813783	31814783	+	807.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 4 of 11)	intron (NM_144541, intron 4 of 11)	116233.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	11.44	9.68	5.55	7.42	7.0	17.68	9.51	6.63	14.99
Merged-chr14-63382027-3	chr14	63381537	63382537	+	807.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 6 of 12)	intron (NM_007549, intron 6 of 12)	35150.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	7.44	5.99	0.92	13.49	5.13	11.25	2.11	5.31	3.75
Merged-chr3-121262917-2	chr3	121262367	121263367	+	807.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355678, exon 1 of 8)	5' UTR (NM_001355678, exon 1 of 8)	292.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	12.59	3.23	1.85	14.84	2.33	0.0	6.34	2.21	3.75
Merged-chr18-75462761-3	chr18	75462253	75463253	+	807.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-51892.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	5.72	7.83	0.0	6.75	3.27	8.04	8.45	1.33	7.49
Merged-chr17-30474792-3	chr17	30474301	30475301	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	-78621.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	20.59	19.35	9.25	6.07	5.13	4.82	14.79	3.1	3.75
Merged-chr15-3271445-2	chr15	3270945	3271945	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009155, intron 1 of 4)	intron (NM_009155, intron 1 of 4)	468.0	NM_009155	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	29.17	37.32	32.37	31.04	32.19	40.99	66.54	57.92	38.1
Merged-chr15-78119921-2	chr15	78119410	78120410	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-630.0	NM_007583	12300.0	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	1.72	1.38	1.85	2.02	1.4	1.61	1.06	1.77	2.5
Merged-chr11-118998769-1	chr11	118998269	118999269	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10588.0	NM_001359574	238011.0	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	4.58	2.3	3.7	66.12	78.37	32.96	1.06	0.44	2.5
Merged-chr2-121419153-2	chr2	121418653	121419653	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007952, intron 1 of 12)	intron (NM_007952, intron 1 of 12)	5251.0	NM_007952	14827.0	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	16.59	17.05	3.7	14.84	13.06	11.25	9.51	14.59	13.12
Merged-chr1-173459711-2	chr1	173459216	173460216	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013779, exon 6 of 9)	exon (NM_001013779, exon 6 of 9)	39112.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	7.44	11.98	21.27	7.42	12.6	14.47	2.11	2.65	5.0
Merged-chr2-124643618-1	chr2	124643118	124644118	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-9963.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	44.05	42.85	43.47	49.25	38.25	56.27	35.91	27.86	25.61
Merged-chr7-79935242-1	chr7	79934742	79935742	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	22.0	NM_027420	70420.0	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	140.15	85.25	25.9	112.68	97.5	55.46	35.91	38.47	26.85
Merged-chr2-60839020-1	chr2	60838520	60839520	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	42418.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	20.02	10.6	12.95	29.69	13.06	27.33	15.84	12.82	15.61
Merged-chr7-67952387-1	chr7	67951887	67952887	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_010513, exon 1 of 21)	5' UTR (NM_010513, exon 1 of 21)	130.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	52.06	47.92	40.7	91.09	56.45	72.34	42.25	26.97	10.62
Merged-chr4-126702676-3	chr4	126702183	126703183	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011970, intron 3 of 5)	intron (NM_011970, intron 3 of 5)	25040.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	13.73	21.66	30.52	23.62	23.79	29.74	31.69	25.2	24.98
Merged-chr10-93444569-2	chr10	93444081	93445081	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8815.0	NM_001313897	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	2.29	2.76	3.7	4.72	0.0	1.61	1.06	4.42	3.75
Merged-chr1-97667472-1	chr1	97666972	97667972	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR31_Mm|LTR|ERVK	-5454.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	20.02	11.06	9.25	13.49	12.13	6.43	10.56	7.52	9.99
Merged-chr19-41597723-2	chr19	41597207	41598207	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9056.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	1.72	1.38	9.25	5.4	3.27	5.63	13.73	3.54	7.49
Merged-chr10-44632992-3	chr10	44632487	44633487	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-174239.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	109.26	84.78	75.85	130.22	114.29	106.9	117.24	112.31	59.95
Merged-chr1-160792205-1	chr1	160791705	160792705	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013862, intron 1 of 20)	CpG	733.0	NM_013862	29809.0	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	6.29	2.3	6.47	20.24	10.26	10.45	8.45	4.42	5.0
Merged-chr4-106385470-1	chr4	106384970	106385970	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183225, exon 32 of 68)	exon (NM_183225, exon 32 of 68)	69257.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	9.72	5.99	5.55	14.84	6.06	16.08	2.11	2.65	3.75
Merged-chr19-60731065-1	chr19	60730565	60731565	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24922.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	5.15	5.53	1.85	5.4	4.67	11.25	10.56	2.65	4.37
Merged-chr10-24087117-1	chr10	24086617	24087617	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	5177.0	NM_001010837	382348.0	Mm.377897	NM_001010837	ENSMUSG00000100186	Taar8b	Gm1149|taR-8b	trace amine-associated receptor 8B	protein-coding	17.16	12.44	16.65	29.01	9.8	13.66	14.79	5.75	5.0
Merged-chrX-7318652-1	chrX	7318152	7319152	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243762, intron 1 of 13)	CpG	706.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	61.78	93.54	56.42	60.72	63.45	65.91	79.21	72.96	81.19
Merged-chr12-100885781-1	chr12	100885281	100886281	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177674, intron 2 of 2)	intron (NM_001177674, intron 2 of 2)	13743.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	11.44	4.15	7.4	4.05	4.67	1.61	5.28	2.65	2.5
Merged-chr13-107677022-3	chr13	107676506	107677506	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10391.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	12.01	12.9	9.25	13.49	6.53	7.23	5.28	1.77	2.5
Merged-chr1-183369026-1	chr1	183368526	183369526	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177389, intron 1 of 26)	CpG	539.0	NM_177389	338366.0	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	98.97	84.78	67.52	93.79	64.38	97.26	72.88	58.37	33.72
Merged-chr9-99009338-1	chr9	99008838	99009838	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080776, exon 7 of 8)	exon (NM_001080776, exon 7 of 8)	22965.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	65.79	84.32	16.65	85.01	107.3	41.8	76.05	111.87	11.24
Merged-chr10-24638406-1	chr10	24637906	24638906	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_008813, exon 25 of 25)	3' UTR (NM_008813, exon 25 of 25)	42964.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	96.11	118.88	75.85	95.81	93.3	124.59	106.67	113.64	70.57
Merged-chr17-27242306-1	chr17	27241806	27242806	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5760.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	5.72	3.69	5.55	4.72	6.06	3.22	5.28	1.33	2.5
Merged-chr12-98703800-1	chr12	98703300	98704300	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146199, intron 8 of 18)	intron (NM_001146199, intron 8 of 18)	30845.0	NM_011877	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	11.44	18.89	4.62	18.22	5.6	24.11	8.45	5.75	5.0
Merged-chr11-5509345-3	chr11	5508853	5509853	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11288.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	40.04	33.18	28.67	24.29	18.19	20.9	28.52	28.3	27.48
Merged-chr10-59889554-1	chr10	59889054	59890054	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	9963.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	7.44	5.99	3.7	8.1	7.93	4.82	4.22	5.31	5.0
Merged-chr6-108472009-1	chr6	108471509	108472509	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 45 of 61)	intron (NM_010585, intron 45 of 61)	-17734.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.29	6.91	5.55	6.07	1.87	5.63	2.11	2.65	5.0
Merged-chr14-118662204-1	chr14	118661704	118662704	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	intron (NM_001033336, intron 3 of 30)	14727.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	6.86	5.53	0.92	4.72	4.67	5.63	7.39	3.1	7.49
Merged-chr8-109872517-1	chr8	109872017	109873017	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122594, intron 1 of 18)	intron (NM_001122594, intron 1 of 18)	3914.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	6.29	8.75	20.35	14.17	8.4	24.11	6.34	4.86	5.0
Merged-chr10-100137554-3	chr10	100137051	100138051	+	807.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORSL|DNA|hAT-Tip100	121730.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	8.58	15.67	10.17	8.1	10.73	16.08	16.9	14.59	8.12
Merged-chr12-51679942-1	chr12	51679442	51680442	+	807.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	L1M4|LINE|L1	-11024.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	31.46	25.8	37.92	25.64	12.13	19.29	44.36	38.91	29.98
Merged-chr5-64961709-1	chr5	64961209	64962209	+	807.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_011604	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	161.89	142.84	148.92	184.87	124.56	156.74	161.6	185.27	127.4
Merged-chr17-37022851-3	chr17	37022331	37023331	+	806.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010814, intron 1 of 7)	intron (NM_010814, intron 1 of 7)	567.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	18.31	7.37	9.25	6.75	4.2	4.02	3.17	6.63	9.37
Merged-chr13-58521134-2	chr13	58520631	58521631	+	806.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89746.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	28.6	17.51	18.5	16.19	15.86	10.45	2.11	14.15	7.49
Merged-chr5-92345232-3	chr5	92344737	92345737	+	806.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	3652.0	NM_021274	15945.0	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	3.43	3.69	8.32	4.72	5.6	3.22	10.56	4.86	2.5
Merged-chr8-26687242-3	chr8	26686732	26687732	+	806.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137191.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	20.59	16.13	16.65	24.29	9.8	18.49	41.19	18.57	26.23
Merged-chr10-20855120-2	chr10	20854615	20855615	+	806.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97432.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	9.72	4.61	1.85	12.82	7.93	6.43	11.62	10.61	9.99
Merged-chr3-7613800-2	chr3	7613321	7614321	+	806.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008371)	promoter-TSS (NM_008371)	-61.0	NM_001313888	16196.0	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	1.14	7.37	1.85	7.42	0.47	0.0	12.67	10.61	11.87
Merged-chr14-58308998-2	chr14	58308485	58309485	+	806.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	236299.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	14.87	18.89	14.8	26.99	23.79	32.15	90.83	98.16	53.71
Merged-chr10-94354306-5	chr10	94353870	94354870	+	806.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	MTEa|LTR|ERVL-MaLR	42421.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	38.33	25.34	14.8	53.98	26.12	13.66	24.29	32.72	21.86
Merged-chr2-29592799-3	chr2	29592304	29593304	+	806.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26916.0	NM_054050	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.72	2.76	0.0	8.1	6.06	3.22	5.28	3.54	1.25
Merged-chr16-92801806-3	chr16	92801326	92802326	+	806.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	24248.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	20.59	19.35	21.27	26.31	28.92	28.13	14.79	13.71	19.98
Merged-chr3-116256324-3	chr3	116255815	116256815	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2831.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	7.44	2.76	12.95	10.8	5.13	1.61	4.22	3.98	8.74
Merged-chr10-51498523-3	chr10	51498010	51499010	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	7612.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	34.9	39.17	64.75	16.87	14.93	26.53	24.29	30.95	26.23
Merged-chr18-4239099-3	chr18	4238588	4239588	+	806.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73256.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	15.45	28.11	24.05	25.64	17.26	25.72	34.85	32.28	21.23
Merged-chr2-104690909-3	chr2	104690418	104691418	+	806.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 5 of 9)	MTC|LTR|ERVL-MaLR	21244.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	8.01	4.61	8.32	4.05	2.33	3.22	2.11	3.54	2.5
Merged-chr10-95795715-1	chr10	95795215	95796215	+	806.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144948.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.43	7.37	0.0	3.37	4.2	7.23	4.22	5.31	5.62
Merged-chr4-70515687-3	chr4	70515187	70516187	+	806.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172694, intron 1 of 5)	intron (NM_172694, intron 1 of 5)	19241.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.29	4.61	0.0	4.72	2.8	2.41	3.17	4.42	2.5
Merged-chrX-106628723-3	chrX	106628225	106629225	+	806.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033541, intron 1 of 3)	MTD|LTR|ERVL-MaLR	-25046.0	NM_001281859	58861.0	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	4.0	4.15	3.7	2.02	5.13	4.02	3.17	1.77	5.0
Merged-chr9-63589462-3	chr9	63588983	63589983	+	806.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 3 of 21)	RMER16_Mm|LTR|ERVK	13010.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	13.16	8.29	7.4	22.27	12.6	4.82	25.35	14.59	2.5
Merged-chr10-81484155-3	chr10	81483661	81484661	+	806.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1452.0	NM_001311124	319586.0	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	2.29	0.46	1.85	2.7	2.33	0.0	3.17	0.44	0.0
Merged-chr5-113985986-2	chr5	113985521	113986521	+	806.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 2 of 14)	intron (NM_198109, intron 2 of 14)	7736.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	23.45	28.11	36.07	18.22	20.53	40.99	15.84	23.88	19.98
Merged-chr13-91808308-2	chr13	91807846	91808846	+	806.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145453)	promoter-TSS (NM_145453)	-650.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	90.96	86.17	58.27	82.99	64.84	53.85	80.27	54.83	44.34
Merged-chr3-95301533-1	chr3	95301033	95302033	+	806.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085383, intron 6 of 12)	intron (NM_001085383, intron 6 of 12)	5271.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	4.0	5.53	7.4	6.07	3.27	4.82	3.17	1.77	5.0
Merged-chr19-9985097-3	chr19	9984601	9985601	+	806.722229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011913)	TTS (NM_011913)	2455.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	95.53	60.36	42.55	94.46	94.23	74.75	88.72	90.64	30.6
Merged-chr13-106812192-3	chr13	106811675	106812675	+	806.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 30 of 30)	intron (NM_001360897, intron 30 of 30)	124783.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	11.44	7.37	7.4	27.66	26.59	30.54	11.62	8.4	15.61
Merged-chr3-108151515-3	chr3	108151010	108152010	+	806.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001305461, exon 2 of 3)	5' UTR (NM_001305461, exon 2 of 3)	3422.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	49.2	41.93	39.77	46.56	41.05	57.07	40.14	71.63	38.72
Merged-chr6-39562810-3	chr6	39562282	39563282	+	806.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4948.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	2.86	1.84	4.62	8.1	6.53	11.25	14.79	10.17	8.74
Merged-chr9-73044291-3	chr9	73043795	73044795	+	806.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023635)	promoter-TSS (NM_023635)	-515.0	NM_023635	11891.0	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	3.43	2.76	4.62	12.14	8.86	13.66	7.39	3.98	5.0
Merged-chr3-152355467-1	chr3	152354967	152355967	+	806.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355666, intron 1 of 21)	intron (NM_001355666, intron 1 of 21)	8989.0	NM_001076676	170822.0	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	18.88	18.89	40.7	17.54	20.06	37.78	19.01	8.84	23.73
Merged-chr4-59837941-3	chr4	59837438	59838438	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	32288.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	35.47	27.19	42.55	27.66	23.33	50.64	30.63	18.13	24.36
Merged-chr9-109200559-1	chr9	109200059	109201059	+	806.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4584.0	NM_177598	211305.0	Mm.225242	NM_177598	ENSMUSG00000049314	Fbxw13	E330017E16	F-box and WD-40 domain protein 13	protein-coding	3.43	10.6	18.5	2.02	4.67	18.49	4.22	5.31	13.12
Merged-chr2-181460006-3	chr2	181459530	181460530	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028125)	promoter-TSS (NM_028125)	-604.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	12.01	10.6	7.4	10.8	4.67	6.43	12.67	4.42	0.0
Merged-chr10-60348080-3	chr10	60347511	60348511	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	1160.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	76.08	71.88	90.65	105.93	56.91	107.71	106.67	99.05	50.59
Merged-chr11-58965274-3	chr11	58964811	58965811	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031172, exon 2 of 7)	exon (NM_031172, exon 2 of 7)	1530.0	NM_031172	56631.0	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	7.44	8.75	12.95	17.54	9.33	20.09	27.46	12.38	14.99
Merged-chr4-101296941-3	chr4	101296470	101297470	+	806.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-31688.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	15.45	13.82	7.4	18.22	19.13	26.53	23.24	20.34	18.11
Merged-chr1-191241756-2	chr1	191241239	191242239	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17285.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	9.15	13.36	3.7	14.84	13.53	11.25	11.62	7.52	12.49
Merged-chr18-60710874-2	chr18	60710377	60711377	+	806.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	16689.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	11.44	15.21	9.25	26.99	17.26	20.9	13.73	6.63	8.12
Merged-chr2-50674495-2	chr2	50673982	50674982	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-235202.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.29	5.53	1.85	2.7	5.6	1.61	6.34	2.65	2.5
Merged-chr18-56608934-2	chr18	56608424	56609424	+	806.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20576.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	1.14	0.46	1.85	3.37	1.4	1.61	2.11	0.88	0.0
Merged-chr16-18419603-3	chr16	18419106	18420106	+	806.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007744, intron 1 of 4)	B4A|SINE|B4	-6112.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	18.88	22.12	20.35	22.27	22.86	36.17	24.29	15.48	15.61
Merged-chrX-105928956-8	chrX	105928426	105929426	+	806.62915	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 1 of 34)	CpG	446.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	104.69	138.7	73.07	85.01	93.77	116.55	115.12	117.62	69.95
Merged-chr4-126536657-2	chr4	126536149	126537149	+	806.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3191.0	NM_153177	76850.0	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	49.2	73.26	70.3	49.93	54.58	52.25	43.3	58.37	43.72
Merged-chr19-6856897-3	chr19	6856394	6857394	+	806.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081291, intron 6 of 26)	intron (NM_001081291, intron 6 of 26)	1317.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	36.61	38.71	39.77	40.48	38.72	50.64	58.09	59.25	28.1
Merged-chr16-21351484-3	chr16	21350980	21351980	+	806.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-18124.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	17.16	9.22	12.95	11.47	3.27	3.22	8.45	13.71	17.49
Merged-chr19-12537406-2	chr19	12536902	12537902	+	806.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35406.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	4.58	7.37	3.7	4.72	2.8	1.61	26.4	33.16	21.86
Merged-chr18-43477788-2	chr18	43477306	43478306	+	806.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-39520.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	9.15	5.99	0.0	10.8	6.53	1.61	4.22	0.44	2.5
Merged-chr10-95510161-3	chr10	95509661	95510661	+	806.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-5001.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	55.49	55.29	30.52	49.25	35.92	45.01	50.7	53.94	54.96
Merged-chr5-134607318-3	chr5	134606820	134607820	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020044, intron 3 of 12)	intron (NM_020044, intron 3 of 12)	7705.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	6.29	5.53	9.25	11.47	11.66	12.86	8.45	8.84	5.0
Merged-chr6-129472173-3	chr6	129471638	129472638	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	641.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	119.56	160.81	78.62	147.76	120.36	141.47	177.44	234.79	89.93
Merged-chr2-45191943-3	chr2	45191442	45192442	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74500.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	51.48	69.58	62.9	22.27	14.93	20.9	39.08	40.24	23.11
Merged-chr17-45724392-3	chr17	45723892	45724892	+	806.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9452.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	4.58	2.76	1.85	5.4	3.27	1.61	3.17	0.44	0.0
Merged-chr8-18950815-5	chr8	18950319	18951319	+	806.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286469)	promoter-TSS (NM_001286469)	52.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.86	2.3	0.0	8.77	4.2	3.22	10.56	4.86	3.75
Merged-chr5-147894185-2	chr5	147893694	147894694	+	806.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357002, intron 1 of 5)	intron (NM_001357002, intron 1 of 5)	621.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	151.02	126.72	110.07	95.14	98.43	88.42	120.41	139.72	97.43
Merged-chr4-70536031-3	chr4	70535513	70536513	+	806.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1085.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	13.16	7.83	10.17	10.12	4.2	12.06	6.34	9.29	11.24
Merged-chr17-50510736-4	chr17	50510236	50511236	+	806.511902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	1189.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	80.66	120.26	71.22	89.06	102.63	75.56	116.18	122.92	78.69
Merged-chr12-85270439-3	chr12	85269938	85270938	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304475, intron 1 of 11)	CpG	153.0	NM_001304475	217716.0	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	49.2	52.07	16.65	66.8	62.98	31.35	57.03	37.14	21.23
Merged-chr3-9886265-2	chr3	9885770	9886770	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52591.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	13.16	18.89	15.72	21.59	18.19	26.53	55.98	64.11	58.08
Merged-chr15-62469996-2	chr15	62469496	62470496	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-250545.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.72	5.07	3.7	4.72	0.47	9.65	5.28	1.77	1.25
Merged-chr10-40095998-1	chr10	40095498	40096498	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	MIRb|SINE|MIR	46256.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	34.32	39.63	14.8	49.93	41.05	70.73	50.7	51.73	28.1
Merged-chr15-83221955-1	chr15	83221455	83222455	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29776.0	NM_001170954	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	4.0	6.45	1.85	1.35	5.6	4.02	4.22	1.33	3.75
Merged-chr1-183273359-2	chr1	183272862	183273862	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23698.0	NM_181732	108909.0	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	14.87	15.67	21.27	15.52	11.66	12.86	14.79	11.05	14.36
Merged-chr18-59175240-3	chr18	59174730	59175730	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081328)	promoter-TSS (NM_001081328)	-110.0	NM_001081328	78923.0	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.0	0.92	0.92	4.05	4.2	1.61	2.11	0.44	2.5
Merged-chr1-184733745-2	chr1	184733257	184734257	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1264.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	64.64	61.75	18.5	72.19	42.92	54.66	34.85	47.75	19.36
Merged-chr10-46108328-1	chr10	46107828	46108828	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-136420.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	20.59	38.25	16.65	31.04	29.39	40.19	26.4	43.77	35.6
Merged-chr4-53115539-1	chr4	53115039	53116039	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	44356.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	124.71	55.75	33.3	130.22	36.85	63.5	107.73	69.42	26.85
Merged-chr10-95918953-1	chr10	95918453	95919453	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21710.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	12.01	8.29	9.25	10.8	3.73	7.23	7.39	3.98	7.49
Merged-chrX-153623371-1	chrX	153622871	153623871	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	64778.0	NM_001310716	69361.0	Mm.46095	NM_173367	ENSMUSG00000048573	Cypt3	1700006H02Rik|Ckt1r1	cysteine-rich perinuclear theca 3	protein-coding	8.01	2.76	1.85	3.37	2.33	0.0	1.06	0.44	1.25
Merged-chr17-84107233-3	chr17	84106724	84107724	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28564.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	244.84	287.07	116.54	284.06	299.5	176.83	198.56	275.91	103.67
Merged-chr4-150504868-1	chr4	150504368	150505368	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 8 of 22)	intron (NM_001085492, intron 8 of 22)	147306.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	10.3	8.75	9.25	11.47	7.0	19.29	15.84	7.07	10.62
Merged-chr12-39038987-1	chr12	39038487	39039487	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	255276.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	13.16	9.68	9.25	8.1	14.46	20.9	7.39	11.5	14.99
Merged-chr19-56265290-2	chr19	56264786	56265786	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-22626.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	5.15	3.23	2.77	5.4	2.8	0.0	4.22	5.31	5.62
Merged-chrX-77414375-2	chrX	77413879	77414879	+	806.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96848.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	9.72	6.91	12.95	8.77	6.53	19.29	5.28	9.73	2.5
Merged-chr17-17873606-1	chr17	17873106	17874106	+	806.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	10333.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	28.03	34.56	31.45	28.34	19.13	37.78	21.12	26.53	48.71
Merged-chr7-99101196-1	chr7	99100696	99101696	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	intron (NM_178635, intron 3 of 14)	39948.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	46.34	33.18	14.8	42.51	14.46	17.68	61.26	29.18	26.85
Merged-chr9-23651533-1	chr9	23651033	23652033	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	428457.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.15	1.84	3.7	1.35	4.67	4.82	4.22	0.44	2.5
Merged-chr16-94571418-1	chr16	94570918	94571918	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	511.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	188.21	188.46	125.79	173.4	211.79	112.53	171.1	151.22	87.43
Merged-chr13-112990615-1	chr13	112990115	112991115	+	806.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081062, exon 3 of 3)	3' UTR (NM_001081062, exon 3 of 3)	2813.0	NM_001081062	218630.0	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|UDG2|Ung2	cyclin O	protein-coding	3.43	0.46	1.85	2.02	3.73	1.61	1.06	0.0	0.0
Merged-chr16-7420017-4	chr16	7419547	7420547	+	806.458313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	350212.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	4.0	1.84	3.7	7.42	2.33	4.82	6.34	7.07	6.87
Merged-chr2-71543171-3	chr2	71542691	71543691	+	806.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010054)	TTS (NM_010054)	3563.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	2.29	1.38	5.55	4.05	2.33	3.22	3.17	3.1	0.0
Merged-chr13-4777053-3	chr13	4776533	4777533	+	806.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167869.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	4.0	10.6	1.85	2.7	6.53	0.0	1.06	4.42	1.25
Merged-chr2-29655683-2	chr2	29655192	29656192	+	806.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	35972.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	10.87	14.75	18.5	13.49	12.6	8.04	23.24	13.27	13.74
Merged-chr19-11240659-2	chr19	11240178	11241178	+	806.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045317, intron 1 of 2)	Lx|LINE|L1	25473.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	14.3	7.83	3.7	11.47	4.2	8.04	6.34	5.31	3.75
Merged-chr17-71195246-3	chr17	71194744	71195744	+	806.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-9410.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	66.36	56.68	32.37	59.38	39.19	41.8	44.36	47.31	28.1
Merged-chr8-83736148-2	chr8	83735666	83736666	+	806.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	RLTR11A2|LTR|ERVK	5145.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	64.64	77.41	72.15	35.76	22.86	39.39	68.65	64.56	43.72
Merged-chr6-38992161-2	chr6	38991670	38992670	+	806.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 4 of 12)	L1ME3|LINE|L1	73184.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	17.73	17.05	12.95	29.01	20.06	11.25	15.84	15.03	11.24
Merged-chr7-113180453-3	chr7	113179968	113180968	+	806.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-26997.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	17.16	21.66	25.9	26.99	21.46	48.23	20.07	21.67	28.1
Merged-chr11-120555053-2	chr11	120554536	120555536	+	806.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_026814	68701.0	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	24.6	11.98	13.87	41.16	18.19	17.68	11.62	12.82	7.49
Merged-chr8-11451666-3	chr8	11451209	11452209	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-26220.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	100.68	88.47	64.75	109.3	65.78	87.61	97.17	71.19	39.35
Merged-chr6-127155009-3	chr6	127154429	127155429	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-3881.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	26.31	19.81	15.72	3.37	5.6	3.22	8.45	3.98	1.87
Merged-chr15-89147235-3	chr15	89146755	89147755	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011161, intron 1 of 11)	intron (NM_011161, intron 1 of 11)	2351.0	NM_011161	19094.0	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	4.0	5.07	4.62	3.37	0.93	3.22	2.11	3.54	3.12
Merged-chr10-75589356-3	chr10	75588844	75589844	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011820)	promoter-TSS (NM_011820)	-37.0	NM_011820	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	36.04	40.09	29.6	22.27	26.59	36.17	35.91	19.01	26.23
Merged-chr9-110132435-1	chr9	110131935	110132935	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009211, intron 1 of 27)	CpG	411.0	NM_009211	20588.0	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	62.93	47.0	65.67	57.35	51.78	73.14	63.37	49.96	38.72
Merged-chr8-126848821-1	chr8	126848321	126849321	+	806.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151740)	promoter-TSS (NR_151740)	-199.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	223.67	226.71	153.54	241.55	195.0	219.43	271.44	277.68	114.91
Merged-chr5-43894288-3	chr5	43893807	43894807	+	806.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	25498.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	16.59	9.22	20.35	11.47	13.06	11.25	9.51	7.52	13.74
Merged-chr19-3719180-3	chr19	3718682	3719682	+	806.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10771.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	25.74	19.35	11.1	20.92	17.73	12.86	23.24	14.59	7.49
Merged-chr8-126869600-3	chr8	126869114	126870114	+	806.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	151.59	112.89	95.27	190.95	129.69	140.66	172.16	157.85	98.68
Merged-chr9-80068928-3	chr9	80068412	80069412	+	806.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311110, intron 1 of 23)	intron (NM_001311110, intron 1 of 23)	2009.0	NM_146003	215351.0	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	11.44	13.36	12.95	19.57	6.06	6.43	14.79	13.27	8.74
Merged-chr5-125385525-5	chr5	125384974	125385974	+	806.25238	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019639)	TTS (NM_019639)	4543.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	14.87	10.14	14.8	8.77	9.8	8.04	27.46	24.76	23.73
Merged-chr1-34510824-2	chr1	34510329	34511329	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12417.0	NM_001360855	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	13.16	3.23	21.27	14.84	6.06	11.25	10.56	8.4	6.87
Merged-chr7-51892810-2	chr7	51892295	51893295	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330607, intron 2 of 7)	intron (NM_001330607, intron 2 of 7)	13828.0	NM_001330607	14453.0	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	4.58	3.69	0.0	4.72	3.73	6.43	8.45	3.54	3.75
Merged-chr4-97814657-1	chr4	97814157	97815157	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	37031.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.29	9.68	0.0	13.49	13.06	14.47	6.34	5.75	0.62
Merged-chr14-45092509-2	chr14	45091998	45092998	+	806.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104387.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	7.44	1.84	5.55	4.72	5.6	4.82	3.17	2.65	3.12
Merged-chr2-122184077-2	chr2	122183602	122184602	+	806.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026251, intron 1 of 17)	RLTR35B_MM|LTR|ERVL	2087.0	NM_026251	67578.0	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	1.72	5.07	5.55	8.1	2.8	4.02	2.11	0.88	5.0
Merged-chr10-56339261-3	chr10	56338781	56339781	+	806.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38019.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	3.43	3.23	1.85	2.7	1.4	1.61	4.22	0.88	3.12
Merged-chr4-129575405-3	chr4	129574927	129575927	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1786.0	NM_001162433	16818.0	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	11.44	6.45	1.85	16.87	12.13	5.63	6.34	2.21	1.25
Merged-chr8-46883443-3	chr8	46882930	46883930	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103457.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	30.89	41.01	33.3	24.96	29.86	37.78	30.63	39.8	20.61
Merged-chr3-84773101-1	chr3	84772601	84773601	+	806.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42476.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	25.17	24.42	21.27	52.63	47.12	31.35	41.19	48.2	34.97
Merged-chr4-120857203-3	chr4	120856695	120857695	+	806.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	2396.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	29.17	31.79	24.05	19.57	15.39	8.84	30.63	21.67	19.98
Merged-chr15-96757647-2	chr15	96757147	96758147	+	806.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57919.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	14.87	11.98	9.25	28.34	25.19	12.86	15.84	7.07	10.62
Merged-chr7-105787549-2	chr7	105787068	105788068	+	806.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162943)	promoter-TSS (NM_001162943)	-18.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	3.43	1.38	1.85	4.72	1.87	7.23	4.22	0.44	1.25
Merged-chrX-60345640-3	chrX	60345150	60346150	+	806.1444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	48842.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	14.87	27.19	12.02	14.84	14.0	24.92	16.9	18.57	13.12
Merged-chr3-35764834-3	chr3	35764349	35765349	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151627, intron 1 of 31)	intron (NR_151627, intron 1 of 31)	10786.0	NM_029570	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	2.29	5.99	0.92	3.37	1.87	1.61	2.11	4.42	3.12
Merged-chr17-17739260-3	chr17	17738751	17739751	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9E|LTR|ERVK	35310.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	2.86	0.92	0.0	2.02	1.4	1.61	3.17	3.1	1.25
Merged-chr3-8691580-3	chr3	8691095	8692095	+	806.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-24557.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	26.89	14.28	3.7	21.59	15.39	16.08	9.51	10.17	7.49
Merged-chr16-8738081-3	chr16	8737591	8738591	+	806.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003918, intron 1 of 30)	CpG	251.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	52.63	89.85	82.32	51.95	69.04	54.66	45.42	36.26	48.71
Merged-chr6-116456008-3	chr6	116455524	116456524	+	806.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	5154.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	15.45	5.99	3.7	16.19	12.13	6.43	8.45	4.86	3.75
Merged-chr4-102655557-3	chr4	102655051	102656051	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65708.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	59.49	66.35	80.47	32.39	27.99	64.3	22.18	18.13	11.87
Merged-chr9-97115743-3	chr9	97115216	97116216	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4675.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	3.43	5.99	1.85	4.05	7.46	9.65	12.67	3.54	6.25
Merged-chr6-13672914-3	chr6	13672420	13673420	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	B2_Mm2|SINE|B2	5046.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	11.44	9.68	5.55	9.45	5.6	1.61	10.56	7.07	16.24
Merged-chr12-111843167-3	chr12	111842619	111843619	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 7 of 16)	intron (NM_011625, intron 7 of 16)	28949.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	46.91	74.65	48.1	55.33	43.85	60.28	65.48	84.01	73.07
Merged-chr9-50565335-3	chr9	50564848	50565848	+	806.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008360, intron 2 of 7)	intron (NM_008360, intron 2 of 7)	-4080.0	NM_025687	66654.0	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	38.9	32.25	40.7	29.01	27.52	32.15	34.85	27.86	28.1
Merged-chr8-85036107-3	chr8	85035568	85036568	+	806.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145390)	promoter-TSS (NM_145390)	-847.0	NM_145390	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	61.78	71.88	72.15	74.22	57.38	74.75	101.39	157.85	66.82
Merged-chr16-32323946-4	chr16	32323460	32324460	+	806.020813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8292.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	12.01	11.98	20.35	10.12	8.86	17.68	7.39	6.19	9.37
Merged-chr6-5050033-2	chr6	5049532	5050532	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 3 of 15)	CT-rich|Low_complexity|Low_complexity	143914.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	18.88	15.21	9.25	22.27	15.86	24.92	8.45	15.92	20.61
Merged-chr5-32690071-1	chr5	32689571	32690571	+	806.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56271.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	9.72	11.06	6.47	10.12	9.33	6.43	13.73	18.13	12.49
Merged-chr15-36876079-1	chr15	36875579	36876579	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-79150.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	10.3	10.6	19.42	8.1	8.4	9.65	7.39	3.98	12.49
Merged-chr11-54755582-1	chr11	54755082	54756082	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 2 of 5)	intron (NM_178626, intron 2 of 5)	32121.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	84.66	75.11	53.65	82.32	71.38	67.52	60.2	59.69	57.46
Merged-chr6-83646890-1	chr6	83646390	83647390	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016751, exon 5 of 7)	exon (NM_016751, exon 5 of 7)	9226.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	59.49	60.82	49.95	58.7	72.31	94.04	54.92	52.18	45.59
Merged-chrX-129645297-1	chrX	129644797	129645797	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104445.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	3.43	4.61	3.7	2.02	10.73	4.82	4.22	0.88	7.49
Merged-chrX-100494754-1	chrX	100494254	100495254	+	806.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008784, intron 1 of 5)	intron (NM_008784, intron 1 of 5)	463.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	86.38	112.89	62.9	95.81	86.77	71.54	90.83	108.77	70.57
Merged-chr13-45107671-1	chr13	45107171	45108171	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-105575.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	50.91	47.46	20.35	55.33	59.25	52.25	11.62	8.84	6.25
Merged-chr11-70958210-1	chr11	70957710	70958710	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083331, intron 5 of 16)	intron (NM_001083331, intron 5 of 16)	11763.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	6.29	6.45	1.85	5.4	4.2	6.43	11.62	6.19	8.74
Merged-chr2-155764854-3	chr2	155764335	155765335	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10507.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	42.9	29.03	27.75	31.04	16.79	41.8	64.43	38.03	28.1
Merged-chr11-21994067-1	chr11	21993567	21994567	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011023)	TTS (NM_011023)	7584.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	2.29	4.15	0.0	0.0	0.47	1.61	3.17	0.88	0.0
Merged-chr14-14843228-3	chr14	14842715	14843715	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195229, intron 7 of 34)	intron (NM_001195229, intron 7 of 34)	22400.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	9.15	5.07	9.25	10.12	10.73	17.68	3.17	4.86	6.87
Merged-chr5-65931479-1	chr5	65930979	65931979	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35645.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	9.72	12.9	13.87	16.87	12.6	20.09	15.84	12.38	8.74
Merged-chr16-8768843-2	chr16	8768327	8769327	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30485.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	37.18	34.56	49.02	30.36	31.26	49.83	34.85	47.75	27.48
Merged-chr2-32009013-1	chr2	32008513	32009513	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172268, intron 18 of 35)	intron (NM_172268, intron 18 of 35)	34563.0	NM_172268	227720.0	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	16.02	17.97	23.12	22.94	10.26	19.29	28.52	20.34	14.36
Merged-chr7-81828943-2	chr7	81828452	81829452	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146193, intron 1 of 7)	CpG	479.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	218.52	164.04	226.61	224.68	133.42	163.97	193.28	137.07	138.02
Merged-chr13-59761071-1	chr13	59760571	59761571	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026921, intron 2 of 3)	intron (NM_026921, intron 2 of 3)	8718.0	NM_026921	69046.0	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	6.29	6.91	15.72	6.07	4.2	8.04	3.17	7.52	2.5
Merged-chr2-92460376-1	chr2	92459876	92460876	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_211358)	promoter-TSS (NM_211358)	142.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	29.17	21.66	25.9	35.76	27.99	54.66	36.97	42.45	14.99
Merged-chr10-94357623-1	chr10	94357123	94358123	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	45674.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	285.45	305.04	191.47	300.92	254.71	192.11	358.05	397.95	158.63
Merged-chr17-35266294-1	chr17	35265794	35266794	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_010380, exon 5 of 8)	exon (NM_010380, exon 5 of 8)	3171.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	20.59	10.6	5.55	8.1	2.33	9.65	12.67	8.4	8.12
Merged-chr11-61564208-2	chr11	61563702	61564702	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	15485.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	20.02	18.89	13.87	20.92	11.66	21.7	5.28	11.94	13.74
Merged-chr12-117427558-2	chr12	117427030	117428030	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-88949.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	2.86	1.38	9.25	4.72	0.47	0.0	4.22	3.1	2.5
Merged-chr2-6696491-1	chr2	6695991	6696991	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	Lx8b|LINE|L1	25171.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	23.45	26.73	17.57	29.69	22.86	16.08	34.85	24.32	8.74
Merged-chr18-20735617-2	chr18	20735121	20736121	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	10783.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	86.95	107.82	81.4	87.71	55.98	86.81	65.48	101.7	61.83
Merged-chr5-137314242-1	chr5	137313742	137314742	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011639)	promoter-TSS (NM_011639)	-1.0	NM_011639	22051.0	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	51.48	29.03	20.35	58.03	53.65	29.74	20.07	20.78	13.74
Merged-chr10-75105823-1	chr10	75105323	75106323	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081412, intron 1 of 22)	MER58A|DNA|hAT-Charlie	44927.0	NM_001081412	110279.0	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	9.72	1.38	0.0	0.0	1.87	1.61	2.11	2.21	2.5
Merged-chr13-101766217-1	chr13	101765717	101766717	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	2000.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	22.88	31.33	35.15	35.09	20.99	32.15	38.02	38.03	31.85
Merged-chr1-35862522-1	chr1	35862022	35863022	+	806.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-205878.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	20.59	22.12	20.35	3.37	2.33	1.61	4.22	3.54	3.75
Merged-chr10-88204466-1	chr10	88203966	88204966	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026070, intron 2 of 6)	MERVL_2A-int|LTR|ERVL	3369.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	2.86	4.15	5.55	4.72	5.13	12.86	3.17	3.1	8.74
Merged-chr7-29383527-1	chr7	29383027	29384027	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 8 of 22)	intron (NM_001081028, intron 8 of 22)	79522.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	8.01	3.23	3.7	6.75	2.8	4.82	2.11	0.44	3.75
Merged-chr4-12305421-1	chr4	12304921	12305921	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133406.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	5.15	7.37	3.7	0.67	3.27	3.22	2.11	2.21	5.0
Merged-chr10-128578449-1	chr10	128577949	128578949	+	806.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010153, exon 12 of 28)	exon (NM_010153, exon 12 of 28)	6048.0	NR_105882	102465553.0		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	11.44	9.68	9.25	18.22	13.06	16.08	13.73	16.8	6.25
Merged-chr4-43492387-3	chr4	43491874	43492874	+	805.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037913)	promoter-TSS (NM_001037913)	685.0	NR_001460	19782.0		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	218.52	179.71	104.52	176.1	152.55	86.01	135.19	162.28	107.42
Merged-chr2-168625221-2	chr2	168624715	168625715	+	805.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	4.58	4.61	6.47	4.05	6.53	7.23	7.39	2.21	1.25
Merged-chr15-89131562-3	chr15	89131057	89132057	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013871, intron 11 of 11)	intron (NM_013871, intron 11 of 11)	-2857.0	NR_028449	170787.0	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	8.58	6.45	1.85	2.7	3.27	3.22	2.11	5.31	6.25
Merged-chr5-101938740-3	chr5	101938226	101939226	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 13 of 66)	intron (NM_172882, intron 13 of 66)	131195.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	36.04	23.5	21.27	29.69	14.46	14.47	36.97	22.99	13.12
Merged-chr19-55767432-3	chr19	55766924	55767924	+	805.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	25614.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	61.78	59.9	61.05	55.33	37.32	59.48	54.92	43.33	19.36
Merged-chr19-5796199-4	chr19	5795686	5796686	+	805.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-205.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	82.38	42.85	38.85	35.76	16.33	17.68	20.07	22.55	20.61
Merged-chr8-126920602-3	chr8	126920129	126921129	+	805.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25292.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	137.29	134.09	94.35	152.49	122.69	115.75	118.29	122.48	68.07
Merged-chr3-79114417-2	chr3	79113920	79114920	+	805.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	L2c|LINE|L2	30467.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	26.31	17.97	10.17	10.8	7.0	8.84	23.24	23.43	20.61
Merged-chr17-86685442-2	chr17	86684947	86685947	+	805.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68417.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	5.15	3.69	2.77	2.7	2.8	0.8	2.11	1.77	9.37
Merged-chr15-58145449-3	chr15	58144954	58145954	+	805.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029734, intron 1 of 5)	intron (NM_029734, intron 1 of 5)	4088.0	NM_001326599	76773.0	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	40.62	28.57	1.85	43.18	28.92	21.7	36.97	33.16	20.61
Merged-chr10-5208501-1	chr10	5208001	5209001	+	805.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 86 of 145)	intron (NM_001347711, intron 86 of 145)	-13794.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	9.15	7.83	3.7	14.17	8.86	8.04	7.39	15.03	3.75
Merged-chr9-60758057-1	chr9	60757557	60758557	+	805.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36385.0	NM_001357408	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	9.15	1.38	1.85	5.4	4.67	3.22	2.11	0.44	6.25
Merged-chr15-50708407-3	chr15	50707915	50708915	+	805.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	180634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.01	4.61	3.7	5.4	4.2	4.82	13.73	5.75	6.25
Merged-chr7-3614195-1	chr7	3613695	3614695	+	805.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175632, intron 2 of 4)	intron (NM_175632, intron 2 of 4)	1962.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	5.15	2.76	3.7	4.72	4.2	4.82	1.06	2.21	8.74
Merged-chr9-44477919-2	chr9	44477423	44478423	+	805.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4902.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	9.15	6.91	9.25	14.17	9.33	11.25	41.19	34.05	29.98
Merged-chr4-6372437-3	chr4	6371892	6372892	+	805.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	L1MB5|LINE|L1	6712.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	177.91	176.48	155.39	206.46	203.86	166.38	242.92	271.93	75.57
Merged-chr10-77608776-2	chr10	77608270	77609270	+	805.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301671, intron 1 of 3)	intron (NM_001301671, intron 1 of 3)	2172.0	NM_001301671	20610.0	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	109.26	75.11	58.27	128.87	78.37	32.96	85.55	42.45	23.11
Merged-chr7-100991147-3	chr7	100990646	100991646	+	805.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20852.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	16.59	21.66	24.05	35.09	28.92	36.17	26.4	18.13	13.12
Merged-chr19-16110816-3	chr19	16110316	16111316	+	805.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22015.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	20.02	16.59	14.8	3.37	6.53	8.84	19.01	13.27	16.24
Merged-chr17-50795662-3	chr17	50795164	50796164	+	805.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 17 of 21)	intron (NM_028162, intron 17 of 21)	96983.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.72	4.15	1.85	2.7	3.73	5.63	5.28	0.44	6.87
Merged-chr1-192727166-1	chr1	192726666	192727666	+	805.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 5 of 11)	intron (NM_144881, intron 5 of 11)	44053.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	3.43	3.23	1.85	3.37	2.8	0.0	1.06	5.75	2.5
Merged-chr19-11053233-3	chr19	11052750	11053750	+	805.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2684.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	102.4	155.75	87.87	77.59	93.77	93.24	101.39	122.92	88.68
Merged-chr18-38246238-1	chr18	38245738	38246738	+	805.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015475, intron 1 of 3)	Lx8|LINE|L1	3960.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	4.0	11.98	5.55	7.42	10.73	17.68	8.45	6.19	11.24
Merged-chr8-71298695-3	chr8	71298203	71299203	+	805.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	L1MB5|LINE|L1	25989.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	35.47	35.02	19.42	54.65	33.12	36.97	23.24	30.95	8.74
Merged-chr1-171453119-2	chr1	171452614	171453614	+	805.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	15553.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	18.31	24.42	21.27	3.37	4.67	1.61	43.3	33.16	38.72
Merged-chr6-127153555-2	chr6	127153032	127154032	+	805.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	-2484.0	NM_009829	12444.0	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	12.01	10.6	0.0	1.35	2.8	4.82	6.34	0.88	2.5
Merged-chr11-79293180-3	chr11	79292676	79293676	+	805.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38481.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	43.48	38.25	32.37	50.6	34.06	28.94	33.8	26.09	33.72
Merged-chr2-35444626-3	chr2	35444142	35445142	+	805.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	16807.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	50.34	45.16	62.9	42.51	46.18	52.25	29.57	22.99	18.74
Merged-chr10-80756291-3	chr10	80755792	80756792	+	805.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1089.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	60.07	36.4	24.05	39.81	16.79	21.7	62.31	51.29	32.48
Merged-chr11-55449491-2	chr11	55449005	55450005	+	805.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009720, intron 3 of 3)	intron (NM_009720, intron 3 of 3)	11703.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	20.59	31.79	47.17	26.31	20.06	53.05	15.84	16.36	12.49
Merged-chr11-71850609-3	chr11	71850124	71851124	+	805.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	89498.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	42.9	36.86	22.2	46.56	50.85	22.51	45.42	37.14	13.74
Merged-chr11-63790439-3	chr11	63789951	63790951	+	805.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131833.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	31.46	29.49	23.12	18.89	15.39	8.84	53.87	42.45	27.48
Merged-chr1-67363906-2	chr1	67363432	67364432	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	240905.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	4.0	1.38	0.0	9.45	6.53	6.43	3.17	3.1	3.75
Merged-chr10-94310880-1	chr10	94310380	94311380	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1069.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.15	3.23	1.85	9.45	7.0	4.02	1.06	3.98	1.25
Merged-chr4-124704102-2	chr4	124703583	124704583	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	3384.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	19.45	30.41	34.22	51.28	40.12	81.18	35.91	25.2	30.6
Merged-chr13-51388325-1	chr13	51387825	51388825	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-20293.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	11.44	5.53	16.65	15.52	3.73	13.66	21.12	11.05	3.75
Merged-chr1-55821293-1	chr1	55820793	55821793	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109948.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.58	4.15	11.1	11.47	11.66	14.47	7.39	6.19	4.37
Merged-chr14-25855477-2	chr14	25855045	25856045	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	13390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	30.89	18.89	30.52	29.01	11.66	23.31	46.47	33.16	11.87
Merged-chr13-34282255-1	chr13	34281755	34282755	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	62927.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	16.59	13.82	14.8	20.24	14.93	16.08	12.67	17.69	14.99
Merged-chr15-64287734-2	chr15	64287227	64288227	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	24946.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	19.45	7.83	20.35	18.22	11.66	16.08	14.79	13.27	6.25
Merged-chr16-21216203-3	chr16	21215684	21216684	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010143, intron 3 of 15)	intron (NM_010143, intron 3 of 15)	11389.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	4.0	2.3	1.85	9.45	0.0	6.43	3.17	0.88	3.75
Merged-chr3-27616585-1	chr3	27616085	27617085	+	805.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-31590.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	143.01	135.01	82.32	182.85	109.16	172.81	149.98	148.57	83.06
Merged-chr10-88350034-3	chr10	88349534	88350534	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	7041.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	28.6	27.19	15.72	40.48	27.06	37.78	39.08	19.9	24.98
Merged-chr7-66310118-3	chr7	66309631	66310631	+	805.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	71593.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	88.67	116.58	104.52	66.8	60.18	81.18	78.16	102.58	86.81
Merged-chr2-181592694-5	chr2	181592251	181593251	+	805.486694	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164597)	promoter-TSS (NM_001164597)	-290.0	NM_001164597	269401.0	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	95.53	54.37	50.87	81.64	51.78	49.83	98.23	48.2	38.1
Merged-chr9-94512999-3	chr9	94512487	94513487	+	805.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	25094.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	62.35	52.07	17.57	31.04	33.59	28.13	26.4	26.09	23.73
Merged-chr2-163764007-2	chr2	163763506	163764506	+	805.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13767.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	68.65	68.2	27.75	97.83	104.96	117.35	14.79	4.42	3.12
Merged-chr17-24742274-6	chr17	24741790	24742790	+	805.402771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001346668, exon 4 of 4)	3' UTR (NM_001346668, exon 4 of 4)	5697.0	NM_001346668	27361.0	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	43.48	55.29	35.15	30.36	19.13	31.35	46.47	42.01	39.35
Merged-chr17-31090025-3	chr17	31089532	31090532	+	805.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	32338.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	24.03	25.8	6.47	67.47	51.78	56.27	30.63	30.51	18.74
Merged-chr18-37928034-3	chr18	37927531	37928531	+	805.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	MIR3|SINE|MIR	7445.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	17.73	8.29	16.65	8.1	14.93	12.86	30.63	16.36	12.49
Merged-chr2-45100286-2	chr2	45099786	45100786	+	805.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	9991.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	102.4	125.33	79.55	113.35	119.89	102.08	124.63	144.59	87.43
Merged-chr9-113729172-2	chr9	113728650	113729650	+	805.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12323.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	2.86	8.29	1.85	4.72	4.67	9.65	8.45	1.77	8.74
Merged-chr19-47356659-2	chr19	47356161	47357161	+	805.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 5 of 14)	intron (NM_008018, intron 5 of 14)	-83072.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	7.44	3.23	1.85	6.75	4.67	4.82	5.28	1.33	1.25
Merged-chr10-44630642-2	chr10	44630146	44631146	+	805.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171898.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	120.13	173.72	137.82	163.96	168.88	149.5	154.2	164.49	127.4
Merged-chr7-27209216-2	chr7	27208781	27209781	+	805.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181593, intron 6 of 6)	intron (NM_181593, intron 6 of 6)	3745.0	NR_035422	100316839.0		NR_035422	ENSMUSG00000080533	Mir1191	Mirn1191|mmu-mir-1191|mmu-mir-1191a	microRNA 1191	ncRNA	19.45	20.74	26.82	11.47	15.86	28.13	33.8	22.99	30.6
Merged-chrX-70957109-3	chrX	70956617	70957617	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93139.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	5.72	7.83	3.7	4.05	8.86	24.11	5.28	7.07	10.62
Merged-chr3-69185346-1	chr3	69184846	69185846	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37073.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	7.44	4.15	6.47	5.4	6.06	8.04	7.39	5.75	2.5
Merged-chr7-122520498-3	chr7	122520000	122521000	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-151244.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	27.46	25.8	17.57	10.8	5.13	8.04	9.51	8.4	3.75
Merged-chr13-13589590-3	chr13	13589106	13590106	+	805.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010748)	promoter-TSS (NM_010748)	-803.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	20.59	27.65	37.0	26.99	33.12	16.08	50.7	51.73	22.48
Merged-chr7-4491484-1	chr7	4490984	4491984	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029834, intron 3 of 21)	intron (NM_029834, intron 3 of 21)	10196.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	18.31	8.75	16.65	13.49	7.93	22.51	13.73	6.19	9.37
Merged-chr7-34305564-1	chr7	34305064	34306064	+	805.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-19955.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	32.61	17.97	39.77	32.39	22.86	19.29	33.8	11.94	16.24
Merged-chr14-51253759-3	chr14	51253239	51254239	+	805.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	2373.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	34.32	29.95	12.95	27.66	31.26	24.92	8.45	12.38	6.87
Merged-chr3-41587124-3	chr3	41586653	41587653	+	805.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	22273.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	33.18	29.49	34.22	20.24	30.32	36.97	32.74	23.43	28.1
Merged-chr15-8224442-2	chr15	8223968	8224968	+	805.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162906, intron 31 of 52)	MTD|LTR|ERVL-MaLR	55362.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	8.01	14.75	16.65	20.92	11.2	18.49	14.79	6.19	11.87
Merged-chr18-54848911-3	chr18	54848418	54849418	+	805.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141262.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	44.05	60.36	58.27	51.28	54.58	65.11	59.15	53.94	53.08
Merged-chr4-133157377-3	chr4	133156868	133157868	+	805.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	26735.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	92.67	105.98	86.02	128.87	76.51	110.92	178.5	194.11	113.04
Merged-chr2-37484371-3	chr2	37483869	37484869	+	805.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033960, intron 6 of 18)	MTC|LTR|ERVL-MaLR	32115.0	NM_001033960	227800.0	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	10.87	9.68	1.85	8.1	7.0	9.65	8.45	10.17	7.49
Merged-chr17-15715400-2	chr17	15714912	15715912	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	B3|SINE|B2	10445.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	9.72	9.22	3.7	4.05	4.2	10.45	3.17	10.61	3.75
Merged-chr14-17713227-2	chr14	17712727	17713727	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	52267.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	14.87	11.98	11.1	21.59	14.0	10.45	15.84	9.73	8.12
Merged-chr1-36071389-2	chr1	36070881	36071881	+	805.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2981.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	112.69	89.39	64.75	167.33	105.43	113.33	142.59	94.18	64.33
Merged-chr8-120124468-3	chr8	120123969	120124969	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	10317.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	17.16	21.66	24.05	24.29	20.06	25.72	27.46	16.36	26.23
Merged-chr10-57728523-3	chr10	57728019	57729019	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	intron (NM_001039050, intron 4 of 4)	-56404.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	195.07	275.55	140.59	236.15	278.04	151.92	230.25	381.59	118.66
Merged-chr4-11190790-3	chr4	11190282	11191282	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	-569.0	NM_001037134	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	4.58	1.84	12.02	10.12	3.73	4.82	21.12	17.24	6.25
Merged-chr8-94785888-3	chr8	94785376	94786376	+	805.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13696.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	6.29	5.53	5.55	4.05	1.4	1.61	4.22	3.54	5.0
Merged-chr5-115509679-5	chr5	115509218	115510218	+	805.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	3042.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	82.38	94.92	101.74	72.87	85.37	120.57	118.29	100.81	117.41
Merged-chr17-74457782-2	chr17	74457288	74458288	+	805.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033367, intron 1 of 8)	intron (NM_001033367, intron 1 of 8)	1320.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	127.57	158.51	99.89	129.55	91.9	77.16	97.17	99.05	71.2
Merged-chr2-174564076-3	chr2	174563586	174564586	+	805.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79448.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	2.29	3.69	0.0	4.72	4.2	0.0	3.17	0.44	3.75
Merged-chr2-152343562-3	chr2	152343069	152344069	+	805.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175093, intron 1 of 3)	PB1D10|SINE|Alu	491.0	NM_175093	228775.0	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	32.61	30.41	7.4	15.52	12.6	11.25	25.35	18.13	9.99
Merged-chr6-30026886-3	chr6	30026399	30027399	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F-int|LTR|ERVL-MaLR	-21089.0	NM_001164228	18181.0	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	10.87	2.76	5.55	11.47	8.4	24.11	17.96	4.42	6.25
Merged-chr13-81024715-3	chr13	81024238	81025238	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60664.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	58.35	119.34	59.2	87.71	111.03	120.57	106.67	146.36	85.56
Merged-chr14-55784049-3	chr14	55783551	55784551	+	805.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361604)	promoter-TSS (NM_001361604)	21.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	133.29	121.65	112.84	117.4	117.09	118.16	138.36	206.49	68.07
Merged-chr10-117150053-3	chr10	117149530	117150530	+	805.094421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1556.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	12.59	9.68	12.95	17.54	8.4	22.51	15.84	12.82	11.24
Merged-chr1-170706248-3	chr1	170705732	170706732	+	805.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081304, exon 16 of 16)	3' UTR (NM_001081304, exon 16 of 16)	61700.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	5.72	9.68	7.4	13.49	7.46	12.86	3.17	9.29	3.75
Merged-chr9-111039179-2	chr9	111038687	111039687	+	805.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	18057.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	16.02	8.29	5.55	16.87	5.6	15.27	24.29	16.8	5.0
Merged-chr13-44272913-2	chr13	44272410	44273410	+	805.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-56423.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	9.15	15.21	7.4	19.57	16.79	16.88	12.67	14.15	16.24
Merged-chr1-64615036-3	chr1	64614557	64615557	+	805.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 2 of 2)	intron (NM_025964, intron 2 of 2)	2111.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	76.66	87.55	62.9	66.12	74.64	47.42	100.34	123.36	59.33
Merged-chr11-29647955-3	chr11	29647445	29648445	+	805.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44953.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	8.58	9.68	13.87	12.82	17.26	16.88	39.08	54.39	19.98
Merged-chr17-84352734-3	chr17	84352228	84353228	+	805.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	113480.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	18.31	18.89	21.27	18.22	4.67	14.47	10.56	5.75	5.62
Merged-chr7-33901071-1	chr7	33900571	33901571	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43914.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	22.88	17.05	27.75	16.19	11.2	16.88	14.79	11.94	12.49
Merged-chr14-99932118-1	chr14	99931618	99932618	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010636, intron 5 of 6)	intron (NM_010636, intron 5 of 6)	217678.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	3.43	7.37	0.0	2.7	3.27	1.61	3.17	1.77	1.87
Merged-chr11-78263340-1	chr11	78262840	78263840	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 2 of 38)	intron (NM_001002004, intron 2 of 38)	1586.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	36.61	43.31	28.67	46.56	36.39	47.42	30.63	41.56	38.72
Merged-chr6-117921505-2	chr6	117920988	117921988	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166429, intron 3 of 3)	MER20|DNA|hAT-Charlie	4194.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	17.16	16.13	19.42	10.8	4.2	21.7	13.73	3.1	5.62
Merged-chr3-31403278-1	chr3	31402778	31403778	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92959.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.86	3.69	5.55	12.82	10.26	8.04	19.01	6.63	1.25
Merged-chrX-60231132-3	chrX	60230638	60231638	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 28 of 29)	intron (NM_001359002, intron 28 of 29)	-52049.0	NM_001289731	109904.0	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	8.01	8.29	1.85	5.4	4.2	3.22	8.45	7.07	7.49
Merged-chr4-117133473-2	chr4	117132968	117133968	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013807, exon 2 of 15)	exon (NM_013807, exon 2 of 15)	495.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	168.76	104.6	63.82	154.51	111.5	94.04	159.48	90.2	49.96
Merged-chr10-75772872-2	chr10	75772375	75773375	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010027, exon 2 of 3)	exon (NM_010027, exon 2 of 3)	499.0	NM_010027	13202.0	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	34.32	17.05	19.42	33.06	35.45	24.11	34.85	28.3	10.62
Merged-chr7-79859135-1	chr7	79858635	79859635	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10925.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	6.29	1.38	0.0	4.05	0.93	1.61	7.39	0.88	3.75
Merged-chr13-81055741-1	chr13	81055241	81056241	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	Lx7|LINE|L1	91667.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	3.43	13.36	22.2	17.54	8.86	9.65	16.9	9.29	11.87
Merged-chr12-71867631-1	chr12	71867131	71868131	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026102, intron 1 of 25)	MTD|LTR|ERVL-MaLR	-21912.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.72	3.69	1.85	4.05	10.26	1.61	1.06	9.29	1.25
Merged-chr11-82139592-1	chr11	82139092	82140092	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24407.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	12.01	5.07	0.0	10.8	6.53	4.82	4.22	7.07	9.37
Merged-chr7-45744547-2	chr7	45744037	45745037	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017465, intron 1 of 6)	intron (NM_017465, intron 1 of 6)	-2059.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	4.0	4.15	1.85	6.07	4.67	1.61	1.06	0.44	6.25
Merged-chr9-90236894-1	chr9	90236394	90237394	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	33875.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	212.8	251.13	161.87	249.65	233.25	208.98	157.37	179.52	134.27
Merged-chr11-119058861-2	chr11	119058408	119059408	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17995.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	6.29	4.61	0.0	9.45	4.2	4.82	9.51	10.61	5.0
Merged-chr2-27732987-2	chr2	27732476	27733476	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	22393.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	96.11	87.55	91.57	61.4	66.71	83.59	72.88	64.11	54.33
Merged-chr17-67318020-1	chr17	67317520	67318520	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	36439.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	13.16	11.06	9.25	22.27	19.59	11.25	24.29	18.57	13.74
Merged-chr3-121544830-1	chr3	121544330	121545330	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.0	5.07	1.85	5.4	5.13	1.61	8.45	7.52	1.87
Merged-chr16-95955469-1	chr16	95954969	95955969	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-26392.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	27.46	27.19	21.27	32.39	21.46	16.08	39.08	33.16	19.36
Merged-chr12-17762265-1	chr12	17761765	17762765	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	71456.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	15.45	15.21	22.2	6.75	11.2	12.86	17.96	7.52	8.74
Merged-chr13-100002061-2	chr13	100001580	100002580	+	805.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	13559.0	NM_030026	78038.0	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	4.0	0.92	10.17	0.67	3.27	0.0	0.0	0.0	4.37
Merged-chr6-145304244-1	chr6	145303744	145304744	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	53692.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	209.94	229.01	126.72	234.13	209.46	215.42	364.38	432.88	215.46
Merged-chr11-69902155-1	chr11	69901655	69902655	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291119, exon 1 of 28)	exon (NM_001291119, exon 1 of 28)	339.0	NM_001013414	216860.0	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	93.24	47.0	55.5	53.3	22.39	45.82	55.98	33.6	38.1
Merged-chr5-39927732-1	chr5	39927232	39928232	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-283101.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	2.29	4.15	9.25	2.7	2.8	3.22	4.22	1.33	0.0
Merged-chr10-95330861-1	chr10	95330361	95331361	+	805.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-5415.0	NR_045337	69629.0	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	A53T-syn|G2-3|PrPsynA53T|Tg(Prnp-SNCA*A53T)23Mkle	RIKEN cDNA 2310039L15 gene	ncRNA	13.73	8.75	9.25	14.17	12.13	9.65	17.96	13.27	12.49
Merged-chr5-76779325-1	chr5	76778825	76779825	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61274.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	4.58	1.84	2.77	1.35	0.93	4.02	4.22	1.33	1.25
Merged-chr9-69442722-1	chr9	69442222	69443222	+	805.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10961.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	4.58	4.15	0.0	9.45	3.27	3.22	7.39	8.84	2.5
Merged-chr3-54353454-3	chr3	54352926	54353926	+	804.938904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7681.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	2.29	2.3	0.0	5.4	4.67	0.8	3.17	1.33	6.25
Merged-chr11-80780101-2	chr11	80779594	80780594	+	804.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177390)	promoter-TSS (NM_177390)	-69.0	NM_177390	338367.0	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	2.86	2.3	3.7	4.05	6.06	0.0	6.34	0.44	1.87
Merged-chr9-53693919-3	chr9	53693414	53694414	+	804.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	12318.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	8.01	10.14	17.57	12.14	8.4	16.08	11.62	12.38	14.99
Merged-chr10-24622752-3	chr10	24622262	24623262	+	804.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	27320.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	5.72	1.84	1.85	1.35	0.47	3.22	1.06	1.77	2.5
Merged-chr18-34262974-3	chr18	34262471	34263471	+	804.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360980, intron 2 of 16)	intron (NM_001360980, intron 2 of 16)	15277.0	NM_001360979	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	12.01	19.35	1.85	8.1	6.53	9.65	12.67	15.03	5.62
Merged-chr3-96026849-2	chr3	96026328	96027328	+	804.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 13 of 14)	intron (NM_013841, intron 13 of 14)	-30989.0	NM_023320	67220.0	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	12.59	10.6	22.2	9.45	11.66	16.08	17.96	6.63	11.24
Merged-chr19-42148105-5	chr19	42147654	42148654	+	804.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183195, exon 1 of 2)	exon (NM_183195, exon 1 of 2)	765.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	77.23	54.83	57.35	91.09	87.7	86.01	24.29	10.17	19.36
Merged-chr11-86758767-2	chr11	86758234	86759234	+	804.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1167.0	NM_001356393	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	270.01	294.9	181.29	385.26	385.34	249.17	290.45	418.73	197.98
Merged-chr2-152737484-2	chr2	152736970	152737970	+	804.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010495)	TTS (NM_010495)	1219.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	136.15	138.7	68.45	85.01	63.45	53.85	73.93	71.63	59.33
Merged-chr4-102759652-2	chr4	102759143	102760143	+	804.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-492.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	31.46	23.5	12.95	41.83	37.79	18.49	10.56	6.63	3.75
Merged-chr5-33983494-1	chr5	33982994	33983994	+	804.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033458)	promoter-TSS (NM_001033458)	61.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	6.29	2.76	1.85	13.49	6.06	3.22	0.0	1.33	0.0
Merged-chr12-40538478-3	chr12	40537972	40538972	+	804.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	92419.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	24.03	17.97	31.45	20.92	19.59	25.72	28.52	18.57	32.48
Merged-chr7-24978930-3	chr7	24978436	24979436	+	804.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290469, exon 22 of 23)	exon (NM_001290469, exon 22 of 23)	-6208.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	1.72	5.07	1.85	6.07	3.73	2.41	4.22	3.54	1.87
Merged-chr8-94995686-1	chr8	94995186	94996186	+	804.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018882, intron 1 of 13)	intron (NM_018882, intron 1 of 13)	11287.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	2.29	0.46	3.7	7.42	2.33	3.22	3.17	0.0	3.75
Merged-chr5-99488820-2	chr5	99488348	99489348	+	804.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	-235921.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	40.62	32.25	14.8	35.76	26.59	59.48	26.4	33.16	13.74
Merged-chr13-41634677-3	chr13	41634171	41635171	+	804.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163572, exon 3 of 3)	3' UTR (NM_001163572, exon 3 of 3)	28455.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	16.02	8.75	22.2	10.8	4.67	15.27	9.51	7.07	1.87
Merged-chr16-4893675-2	chr16	4893156	4894156	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	7556.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	69.79	54.37	53.65	98.51	86.3	75.56	82.38	77.82	33.1
Merged-chr6-51171065-2	chr6	51170576	51171576	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98834.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	5.15	5.99	9.25	4.72	3.27	4.82	27.46	37.14	19.36
Merged-chr10-81427094-1	chr10	81426594	81427594	+	804.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008688)	promoter-TSS (NM_008688)	79.0	NM_008688	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	19.45	17.51	7.4	26.99	17.26	13.66	27.46	28.3	8.74
Merged-chr10-96625765-2	chr10	96625279	96626279	+	804.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8778.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	12.01	1.38	9.25	3.37	3.27	8.04	3.17	3.98	2.5
Merged-chr2-175141981-3	chr2	175141465	175142465	+	804.738892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64952.0	NM_001164689	626832.0	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	15.45	11.52	4.62	12.82	9.8	16.08	20.07	12.82	3.75
Merged-chr4-41568718-3	chr4	41568234	41569234	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	793.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	21.74	23.04	13.87	38.46	26.59	35.37	148.92	120.71	74.94
Merged-chr14-51989758-3	chr14	51989266	51990266	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045728)	promoter-TSS (NR_045728)	-937.0	NR_045728	100502764.0	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	5.15	5.07	7.4	6.75	4.2	3.22	6.34	2.21	3.75
Merged-chr1-138923087-3	chr1	138922567	138923567	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-40642.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	3.43	2.3	12.95	7.42	9.8	4.02	4.22	1.77	3.75
Merged-chr15-3999355-3	chr15	3998862	3999862	+	804.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045740, intron 2 of 2)	RLTR17|LTR|ERVK	3323.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	3.43	5.99	3.7	2.7	4.67	0.8	8.45	3.54	4.37
Merged-chr7-90212960-3	chr7	90212470	90213470	+	804.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52462.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	11.44	10.6	2.77	18.89	10.26	23.31	20.07	18.13	14.99
Merged-chr8-125950460-3	chr8	125949974	125950974	+	804.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40024.0	NM_145608	234878.0	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	4.0	0.92	3.7	2.02	0.0	6.43	1.06	1.33	2.5
Merged-chr14-102906442-3	chr14	102905954	102906954	+	804.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76178.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	49.2	58.98	66.6	55.33	39.19	54.66	51.75	56.16	62.45
Merged-chr9-47688768-1	chr9	47688268	47689268	+	804.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	129440.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	64.64	66.81	33.3	60.05	52.72	57.87	49.64	33.16	34.97
Merged-chr13-76215576-1	chr13	76215076	76216076	+	804.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	116842.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	2.86	4.61	3.7	5.4	0.93	3.22	2.11	7.07	1.25
Merged-chr18-56675580-1	chr18	56675080	56676080	+	804.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32233.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.0	7.37	6.47	2.7	5.13	4.02	20.07	9.73	11.24
Merged-chr7-73451839-2	chr7	73451332	73452332	+	804.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081345, exon 33 of 39)	exon (NM_001081345, exon 33 of 39)	-76058.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	8.01	21.66	12.95	18.89	12.13	16.88	6.34	4.86	16.86
Merged-chr16-4757131-2	chr16	4756630	4757630	+	804.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357050, exon 1 of 6)	exon (NM_001357050, exon 1 of 6)	184.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	85.24	54.83	28.67	225.36	180.54	141.47	247.15	305.98	126.78
Merged-chr6-129366076-3	chr6	129365564	129366564	+	804.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177686)	TTS (NM_177686)	15820.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	13.73	10.14	7.4	6.75	7.0	26.53	11.62	13.27	5.0
Merged-chr4-149520239-3	chr4	149519719	149520719	+	804.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023465, intron 1 of 4)	intron (NM_023465, intron 1 of 4)	1978.0	NM_023465	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	9.72	10.14	19.42	8.77	7.46	3.22	6.34	12.38	6.87
Merged-chr7-16999852-2	chr7	16999351	17000351	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5263.0	NM_001101535	434130.0	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	-	coiled-coil domain containing 8	protein-coding	4.0	1.38	0.0	4.72	1.4	0.0	3.17	1.33	3.12
Merged-chr17-71093286-2	chr17	71092787	71093787	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083934, intron 21 of 36)	intron (NM_001083934, intron 21 of 36)	73730.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	26.31	25.34	18.5	57.35	41.05	18.49	24.29	33.16	33.72
Merged-chr10-98780281-2	chr10	98779782	98780782	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134360.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	24.03	30.41	22.2	43.18	23.79	39.39	41.19	44.66	38.1
Merged-chr10-8460254-2	chr10	8459750	8460750	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	58575.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	8.58	11.98	25.9	5.4	8.86	8.84	24.29	13.27	8.12
Merged-chr4-59352620-1	chr4	59352120	59353120	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86013.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	75.51	111.05	78.62	110.65	84.44	118.16	57.03	43.33	53.08
Merged-chr4-109337001-1	chr4	109336501	109337501	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-6055.0	NM_001159964	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	5.15	5.99	5.55	8.1	4.67	12.06	0.0	5.31	4.37
Merged-chr15-82125922-1	chr15	82125422	82126422	+	804.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028897, intron 30 of 30)	B2_Mm2|SINE|B2	-2000.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	26.31	35.02	27.75	20.24	19.59	29.74	26.4	58.37	30.6
Merged-chr18-88771277-1	chr18	88770777	88771777	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122930.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	13.73	23.04	25.9	20.92	30.79	9.65	16.9	13.27	14.36
Merged-chr11-71863343-1	chr11	71862843	71863843	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	76779.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	8.58	10.6	9.25	10.8	13.53	11.25	19.01	9.73	11.24
Merged-chr10-26779051-3	chr10	26778553	26779553	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	6541.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	43.48	50.23	49.02	54.65	51.32	49.03	30.63	28.3	28.73
Merged-chrX-162653718-1	chrX	162653218	162654218	+	804.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	Lx8|LINE|L1	-10060.0	NM_001359102	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.0	2.76	0.0	3.37	8.86	8.84	3.17	0.88	10.62
Merged-chr2-148443624-2	chr2	148443125	148444125	+	804.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010740)	promoter-TSS (NM_010740)	-90.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	12.59	6.45	5.55	4.05	6.53	0.0	2.11	0.44	0.62
Merged-chr17-31855289-5	chr17	31854757	31855757	+	804.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010831, intron 1 of 13)	CpG-6228	547.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	54.92	42.39	49.02	39.13	15.86	14.47	38.02	20.34	24.98
Merged-chr6-129181830-2	chr6	129181325	129182325	+	804.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053109, intron 1 of 4)	intron (NM_053109, intron 1 of 4)	1210.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	131.0	198.6	166.49	115.38	128.76	106.1	184.83	196.76	96.18
Merged-chr3-137954334-3	chr3	137953837	137954837	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	intron (NM_011932, intron 3 of 8)	27212.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	66.36	70.5	46.25	87.04	79.77	70.73	69.71	53.5	39.97
Merged-chr12-32827176-3	chr12	32826681	32827681	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045032)	TTS (NR_045032)	3065.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	24.6	25.8	17.57	21.59	16.79	12.86	27.46	23.43	14.36
Merged-chr17-28293498-3	chr17	28293000	28294000	+	804.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011145, intron 3 of 7)	intron (NM_011145, intron 3 of 7)	-19878.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	28.03	15.67	35.15	24.29	19.59	32.15	31.69	39.8	18.11
Merged-chr3-107939596-2	chr3	107939075	107940075	+	804.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008184, intron 7 of 7)	intron (NM_008184, intron 7 of 7)	4174.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	6.29	3.23	1.85	10.12	5.6	1.61	8.45	1.33	1.87
Merged-chr3-30823672-2	chr3	30823164	30824164	+	804.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	30788.0	NM_001357528	69276.0	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	3.43	6.45	5.55	7.42	4.2	4.82	9.51	3.1	3.75
Merged-chr5-23826556-2	chr5	23826043	23827043	+	804.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	17602.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	3.43	2.3	5.55	4.72	0.47	7.23	3.17	3.98	2.5
Merged-chr19-43711311-3	chr19	43710834	43711834	+	804.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 5 of 12)	intron (NM_053103, intron 5 of 12)	21645.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	45.76	40.55	42.55	61.4	62.51	73.14	115.12	139.28	66.82
Merged-chr7-81578072-3	chr7	81577569	81578569	+	804.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004185, intron 2 of 9)	intron (NM_001004185, intron 2 of 9)	6777.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	8.58	10.14	10.17	6.75	5.6	3.22	12.67	9.29	8.12
Merged-chr13-45922654-2	chr13	45922146	45923146	+	804.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	42345.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	14.87	10.14	4.62	12.14	12.6	4.82	6.34	4.42	5.0
Merged-chr1-164066890-2	chr1	164066387	164067387	+	804.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164059, intron 4 of 7)	intron (NM_001164059, intron 4 of 7)	4811.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	9.72	13.36	15.72	16.87	7.93	6.43	21.12	18.57	17.49
Merged-chr3-152556641-1	chr3	152556141	152557141	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-110272.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	5.72	7.83	5.55	7.42	7.0	11.25	1.06	5.31	1.25
Merged-chr8-25119736-3	chr8	25119232	25120232	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17553.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	3.43	2.3	0.0	12.82	2.8	0.8	1.06	2.65	5.0
Merged-chr6-122595852-3	chr6	122595359	122596359	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	6585.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	30.89	29.49	38.85	39.13	16.79	40.19	45.42	63.23	56.83
Merged-chr19-56637355-3	chr19	56636870	56637870	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85002.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	3.43	4.15	10.17	11.47	6.53	9.65	8.45	2.65	3.75
Merged-chr2-153276333-1	chr2	153275833	153276833	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-15083.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	4.0	2.3	1.85	19.57	19.13	15.27	15.84	15.48	9.37
Merged-chr2-10079759-1	chr2	10079259	10080259	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025280)	promoter-TSS (NM_025280)	751.0	NM_020615	11949.0	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik|Atp5f1c	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	171.04	184.77	121.17	182.85	259.85	155.93	229.19	259.55	90.56
Merged-chr6-113695929-3	chr6	113695435	113696435	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172161)	TTS (NM_172161)	-1115.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	92.1	82.94	91.57	91.09	54.58	62.7	98.23	107.0	47.46
Merged-chr6-54180006-3	chr6	54179505	54180505	+	804.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 2 of 12)	intron (NM_001163640, intron 2 of 12)	-84853.0	NM_001311133	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	11.44	6.45	0.0	8.77	9.8	9.65	2.11	3.98	8.12
Merged-chr6-87597638-1	chr6	87597138	87598138	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6895.0	NM_021381	58182.0	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pk-r1|Pkr1	prokineticin receptor 1	protein-coding	7.44	2.76	5.55	10.12	4.2	14.47	16.9	12.38	15.61
Merged-chr10-8238776-1	chr10	8238276	8239276	+	804.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	280049.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	10.3	5.53	2.77	14.84	8.86	1.61	5.28	1.77	1.25
Merged-chrX-59999566-2	chrX	59999038	60000038	+	804.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007979)	promoter-TSS (NM_007979)	74.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	25.17	28.57	9.25	37.11	42.45	24.11	44.36	46.43	24.98
Merged-chr19-11999446-3	chr19	11998934	11999934	+	804.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33590.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	8.01	9.22	12.95	12.82	5.13	3.22	5.28	6.19	7.49
Merged-chr3-116205665-3	chr3	116205166	116206166	+	804.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47818.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	55.49	47.92	48.1	78.94	82.11	78.77	73.93	68.98	33.1
Merged-chr11-95333445-3	chr11	95332936	95333936	+	804.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3582.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	4.0	5.99	1.85	10.12	3.73	4.82	11.62	7.52	7.49
Merged-chr2-11203546-3	chr2	11203105	11204105	+	804.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	31223.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	12.59	5.53	3.7	8.1	6.53	6.43	15.84	14.15	14.36
Merged-chrX-134567038-2	chrX	134566542	134567542	+	804.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 4 of 18)	intron (NM_013482, intron 4 of 18)	16098.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	25.74	23.96	12.95	30.36	27.52	17.68	7.39	3.1	5.0
Merged-chr13-103807533-1	chr13	103807033	103808033	+	804.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-32925.0	NM_001361085	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	5.15	3.23	6.47	8.77	4.2	11.25	7.39	7.52	2.5
Merged-chr15-63922358-3	chr15	63921872	63922872	+	804.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 6 of 10)	intron (NR_029414, intron 6 of 10)	7911.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	2.86	2.3	2.77	5.4	0.93	0.0	1.06	1.33	2.5
Merged-chr16-31071021-2	chr16	31070500	31071500	+	804.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	10432.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	11.44	6.45	2.77	10.8	10.73	9.65	15.84	13.71	9.37
Merged-chr3-153293060-1	chr3	153292560	153293560	+	804.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	5589.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	8.58	4.15	6.47	4.72	4.67	9.65	4.22	0.44	9.99
Merged-chr11-103146598-3	chr11	103146112	103147112	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13253.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	8.58	6.91	2.77	10.12	0.93	8.04	0.0	0.44	1.25
Merged-chr4-109062047-3	chr4	109061559	109062559	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347169)	TTS (NM_001347169)	44404.0	NR_030432	791075.0		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	16.02	12.44	12.95	9.45	7.46	9.65	7.39	7.07	8.74
Merged-chr19-41364709-3	chr19	41364199	41365199	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	20371.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	28.6	34.56	18.5	21.59	32.66	27.33	59.15	37.14	22.48
Merged-chr2-150669781-3	chr2	150669282	150670282	+	804.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040331)	TTS (NR_040331)	-1542.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	9.72	7.83	13.87	10.12	14.0	12.06	6.34	5.75	5.0
Merged-chr13-92053212-2	chr13	92052694	92053694	+	804.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65152.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	2.86	1.84	0.0	8.1	7.46	1.61	6.34	0.0	3.75
Merged-chr9-66592328-2	chr9	66591775	66592775	+	804.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144937, intron 1 of 14)	CpG	840.0	NM_001302122	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	147.59	146.99	132.27	190.27	155.35	121.37	181.66	129.11	80.56
Merged-chr11-70848652-3	chr11	70848157	70849157	+	804.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291143, intron 2 of 18)	B1_Mus2|SINE|Alu	3896.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	32.04	42.85	24.05	51.28	26.59	40.99	33.8	41.56	32.48
Merged-chr7-98531761-2	chr7	98531255	98532255	+	804.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	37533.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	4.58	1.84	5.55	4.72	0.93	1.61	7.39	1.33	2.5
Merged-chr19-47441739-3	chr19	47441247	47442247	+	804.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	22664.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	28.03	10.6	10.17	35.09	23.33	17.68	77.1	62.35	33.1
Merged-chr11-69258537-3	chr11	69258035	69259035	+	804.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21513.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	68.07	63.13	81.4	58.7	56.45	44.21	68.65	104.35	41.22
Merged-chrX-152164219-3	chrX	152163721	152164721	+	804.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	MIR3|SINE|MIR	-14788.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	6.29	9.68	5.55	6.07	6.06	9.65	4.22	8.4	9.37
Merged-chr6-121191793-3	chr6	121191298	121192298	+	804.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304773, intron 4 of 4)	intron (NM_001304773, intron 4 of 4)	8131.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	4.58	6.91	3.7	2.7	3.73	3.22	11.62	3.54	7.49
Merged-chr8-3460954-1	chr8	3460454	3461454	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026951, intron 3 of 4)	MLTR11B|LTR|ERVK	6694.0	NM_026951	69129.0	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	3.43	2.76	5.55	10.12	10.26	16.08	3.17	2.21	2.5
Merged-chr2-63510703-2	chr2	63510202	63511202	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64586.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	12.01	16.13	18.5	12.82	15.86	20.9	28.52	21.22	18.11
Merged-chr10-46141173-1	chr10	46140673	46141673	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103575.0	NR_028274	100302593.0		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	5.15	1.84	0.0	6.07	6.53	4.82	5.28	3.1	3.12
Merged-chr3-108113850-2	chr3	108113382	108114382	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	20816.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	6.86	18.43	9.25	27.66	19.59	9.65	16.9	5.75	6.25
Merged-chr18-4910048-1	chr18	4909548	4910548	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR40b|LTR|ERVL	97562.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	15.45	19.35	27.75	16.19	16.79	47.42	14.79	11.94	21.23
Merged-chr4-137815709-2	chr4	137815213	137816213	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-19329.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	6.29	1.84	3.7	4.05	4.67	3.22	6.34	0.88	0.0
Merged-chr7-4717093-1	chr7	4716593	4717593	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001142792, intron 5 of 5)	intron (NM_001142792, intron 5 of 5)	7989.0	NM_001142792	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	4.58	3.23	1.85	2.7	1.87	5.63	5.28	3.54	1.25
Merged-chr2-26139790-1	chr2	26139290	26140290	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001256522)	promoter-TSS (NM_001256522)	-247.0	NM_001256522	109299.0	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	263.14	300.43	216.44	184.87	193.6	188.89	170.05	156.09	139.27
Merged-chr2-13407474-1	chr2	13406974	13407974	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	84402.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	4.0	4.61	1.85	6.75	4.2	2.41	5.28	1.77	3.75
Merged-chr7-81058915-1	chr7	81058415	81059415	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054085, intron 1 of 13)	intron (NM_054085, intron 1 of 13)	1315.0	NM_054085	116904.0	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	6.29	10.14	4.62	14.17	11.66	12.06	8.45	4.42	1.25
Merged-chr8-56767352-1	chr8	56766852	56767852	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	216218.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.57	1.84	0.92	3.37	5.13	1.61	1.06	3.54	0.0
Merged-chr5-125275420-1	chr5	125274920	125275920	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65674.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	21.17	16.59	10.17	22.94	13.53	26.53	14.79	11.5	3.75
Merged-chr4-119233708-1	chr4	119233208	119234208	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001042411)	promoter-TSS (NM_001042411)	-121.0	NM_001042411	56401.0	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	13.73	5.53	2.77	9.45	3.27	16.08	6.34	3.1	5.0
Merged-chr4-41304503-2	chr4	41303998	41304998	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026893, intron 2 of 8)	intron (NM_026893, intron 2 of 8)	10403.0	NM_026893	68970.0	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	29.17	22.12	17.57	18.22	20.06	27.33	15.84	10.61	15.61
Merged-chr9-55283736-1	chr9	55283236	55284236	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_032002)	promoter-TSS (NM_032002)	-111.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	5.15	4.61	0.92	8.77	12.13	20.9	8.45	4.86	8.74
Merged-chr7-136377970-2	chr7	136377478	136378478	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	-28563.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	7.44	14.28	3.7	10.8	8.86	16.08	22.18	29.63	28.73
Merged-chr6-29912887-2	chr6	29912379	29913379	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_021414)	TTS (NM_021414)	-4134.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	1.72	2.76	5.55	0.0	3.27	3.22	4.22	2.21	2.5
Merged-chr10-80666228-1	chr10	80665728	80666728	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9157.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	8.58	7.37	11.1	8.1	7.46	16.88	16.9	7.52	12.49
Merged-chr14-34644087-1	chr14	34643587	34644587	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9487.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	4.58	2.76	1.85	4.05	3.73	0.0	3.17	0.88	3.75
Merged-chr16-11313893-2	chr16	11313393	11314393	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011608)	promoter-TSS (NM_011608)	84.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	12.01	11.06	16.65	12.82	11.2	5.63	7.39	0.88	6.25
Merged-chr5-77286782-2	chr5	77286276	77287276	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14019.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	12.59	7.83	11.1	13.49	7.93	4.82	16.9	9.29	11.24
Merged-chr2-18694825-1	chr2	18694325	18695325	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(CCCCCA)n|Simple_repeat|Simple_repeat	-4197.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	34.32	31.79	16.65	44.53	28.46	20.09	33.8	16.36	16.24
Merged-chr8-106148491-2	chr8	106147988	106148988	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1866.0	NM_133792	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	117.84	124.41	130.42	145.06	107.3	139.86	195.39	240.98	106.17
Merged-chr15-51644464-1	chr15	51643964	51644964	+	804.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	220997.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	9.15	5.53	6.47	7.42	2.33	4.82	1.06	0.88	0.0
Merged-chr10-30843908-1	chr10	30843408	30844408	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1125.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	5.72	7.37	0.92	4.72	5.6	1.61	4.22	3.1	5.0
Merged-chr6-129515296-1	chr6	129514796	129515796	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	2739.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.57	4.61	0.0	0.67	6.06	2.41	5.28	3.1	0.0
Merged-chr19-53428056-1	chr19	53427556	53428556	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36740.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	6.86	3.23	5.55	6.75	4.2	3.22	3.17	1.77	4.37
Merged-chr12-55388969-1	chr12	55388469	55389469	+	804.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	4747.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	11.44	22.12	18.5	26.31	13.06	18.49	24.29	19.46	26.85
Merged-chr6-86671013-3	chr6	86670506	86671506	+	803.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1847.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	20.59	13.82	18.5	24.96	7.46	20.09	27.46	9.29	11.24
Merged-chr2-148586844-2	chr2	148586328	148587328	+	803.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85787.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.29	3.69	3.7	11.47	2.33	10.45	7.39	7.52	8.12
Merged-chr5-130089381-3	chr5	130088871	130089871	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130476, intron 1 of 5)	intron (NM_001130476, intron 1 of 5)	10001.0	NM_001130476	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	18.31	21.2	38.85	23.62	30.79	22.51	24.29	27.41	19.36
Merged-chr11-107547800-3	chr11	107547256	107548256	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198298)	promoter-TSS (NM_198298)	-204.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	29.17	17.51	19.42	30.36	18.19	18.49	36.97	25.65	11.24
Merged-chr7-96730557-3	chr7	96730059	96731059	+	803.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 9 of 32)	intron (NM_011858, intron 9 of 32)	70990.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	4.0	4.61	11.1	4.72	4.2	3.22	5.28	4.86	2.5
Merged-chr1-136625518-4	chr1	136625068	136626068	+	803.924988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177643, exon 2 of 2)	exon (NM_177643, exon 2 of 2)	667.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	139.01	131.32	148.92	167.33	129.22	125.39	155.26	123.36	115.54
Merged-chr1-87549533-3	chr1	87549068	87550068	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111314, intron 1 of 14)	MTE2b|LTR|ERVL-MaLR	24302.0	NM_001111314	53972.0	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	12.59	6.91	1.85	10.8	14.0	8.04	13.73	23.88	6.25
Merged-chr7-19665574-4	chr7	19665111	19666111	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-581.0	NM_019649	56457.0	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	81.8	117.04	109.14	94.46	80.71	103.69	142.59	162.72	61.2
Merged-chr2-131196717-3	chr2	131196213	131197213	+	803.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111075, intron 13 of 14)	intron (NM_001111075, intron 13 of 14)	9765.0	NM_001111075	12531.0	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	16.59	10.14	7.4	8.1	5.6	6.43	6.34	8.4	6.87
Merged-chr9-61982080-3	chr9	61981596	61982596	+	803.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-35297.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	22.88	22.58	32.37	20.24	15.39	30.54	27.46	15.03	21.86
Merged-chr4-55630433-2	chr4	55629924	55630924	+	803.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97949.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	14.87	27.19	8.32	23.62	17.26	36.17	13.73	20.34	26.85
Merged-chr5-35730055-3	chr5	35729546	35730546	+	803.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194344)	promoter-TSS (NM_194344)	-770.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	44.62	42.39	28.67	45.21	51.78	40.19	52.81	55.27	36.85
Merged-chr7-101230466-2	chr7	101229972	101230972	+	803.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	71616.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	17.73	11.06	12.95	49.93	29.86	17.68	35.91	25.65	11.24
Merged-chr15-77836305-2	chr15	77835805	77836805	+	803.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	5870.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	18.31	12.9	12.02	17.54	6.06	12.06	11.62	12.38	11.24
Merged-chr1-36079847-2	chr1	36079358	36080358	+	803.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	11458.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	42.33	50.23	35.15	49.25	55.51	73.95	57.03	52.18	20.61
Merged-chr10-13835869-2	chr10	13835346	13836346	+	803.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	33111.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	33.18	26.26	25.9	17.54	14.0	8.04	3.17	2.65	2.5
Merged-chr1-171412221-3	chr1	171411742	171412742	+	803.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009480, intron 1 of 9)	intron (NM_009480, intron 1 of 9)	561.0	NM_009480	22278.0	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	98.97	126.72	86.02	82.99	70.44	65.91	115.12	142.38	73.07
Merged-chr14-76760636-3	chr14	76760141	76761141	+	803.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153763, intron 1 of 1)	intron (NR_153763, intron 1 of 1)	510.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	9.15	5.53	5.55	4.72	2.8	5.63	26.4	22.11	17.49
Merged-chr3-79229561-3	chr3	79229053	79230053	+	803.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	16634.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	11.44	11.06	12.02	12.82	9.8	0.0	44.36	52.18	27.48
Merged-chr12-79627552-3	chr12	79627059	79628059	+	803.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	297174.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	76.66	100.45	68.45	74.22	68.58	84.4	74.99	105.68	57.46
Merged-chr5-8055878-3	chr5	8055410	8056410	+	803.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080974)	promoter-TSS (NM_001080974)	-632.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	46.91	37.32	32.37	35.09	41.99	62.7	48.58	48.64	29.35
Merged-chr7-121059784-2	chr7	121059280	121060280	+	803.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 4 of 4)	intron (NM_021554, intron 4 of 4)	14750.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	9.72	11.52	16.65	15.52	8.4	5.63	11.62	5.31	13.74
Merged-chr14-120285321-2	chr14	120284813	120285813	+	803.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	9644.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	17.16	20.27	14.8	8.77	11.2	9.65	17.96	13.71	16.86
Merged-chr10-41980935-3	chr10	41980441	41981441	+	803.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 5 of 17)	MIRc|SINE|MIR	37441.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.58	5.07	2.77	8.77	7.0	8.04	3.17	1.77	5.0
Merged-chr13-85285375-1	chr13	85284875	85285875	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	PB1|SINE|Alu	4111.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	4.58	6.91	2.77	6.07	7.93	4.02	9.51	8.4	3.12
Merged-chr12-31059772-1	chr12	31059272	31060272	+	803.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14196.0	NM_027828	104943.0	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	4.0	1.38	1.85	0.67	0.47	3.22	19.01	22.11	7.49
Merged-chr11-77445069-3	chr11	77444595	77445595	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-18818.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	42.33	18.89	16.65	38.46	33.59	21.7	28.52	21.67	8.74
Merged-chr1-46970627-1	chr1	46970127	46971127	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44851.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	1.72	1.84	0.0	6.75	6.53	0.0	6.34	4.42	1.25
Merged-chr17-17589134-3	chr17	17588624	17589624	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	L1MEf|LINE|L1	35365.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	32.61	33.64	26.82	24.29	23.79	24.92	41.19	42.45	26.23
Merged-chr8-111653693-3	chr8	111653210	111654210	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358993, intron 1 of 3)	intron (NM_001358993, intron 1 of 3)	10267.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	8.58	4.61	16.65	3.37	3.27	4.82	7.39	3.98	1.87
Merged-chr3-14871601-1	chr3	14871101	14872101	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007606, exon 7 of 7)	exon (NM_007606, exon 7 of 7)	8063.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	2.86	4.61	5.55	3.37	8.4	1.61	4.22	3.54	2.5
Merged-chr4-136141144-1	chr4	136140644	136141644	+	803.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2678.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	329.5	294.44	213.66	303.62	236.99	213.0	308.41	371.42	176.12
Merged-chr9-52174800-3	chr9	52174291	52175291	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6680.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	15.45	12.9	0.92	19.57	7.0	8.84	7.39	3.1	0.0
Merged-chr2-157407789-3	chr2	157407269	157408269	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16524.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	3.43	3.23	16.65	5.4	7.46	9.65	8.45	3.54	6.87
Merged-chr6-124769540-3	chr6	124768974	124769974	+	803.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302555)	TTS (NM_001302555)	199.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	12.01	0.92	11.1	8.77	2.33	8.04	9.51	5.75	0.0
Merged-chr2-117444945-3	chr2	117444433	117445433	+	803.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102056.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	5.15	4.61	3.7	9.45	3.73	6.43	4.22	6.19	1.25
Merged-chr5-135012279-3	chr5	135011850	135012850	+	803.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190437)	TTS (NM_001190437)	807.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	33.18	31.79	41.62	45.88	33.59	57.07	80.27	91.09	42.47
Merged-chrX-85292957-3	chrX	85292441	85293441	+	803.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43264.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	8.01	10.14	9.25	16.19	16.33	8.04	9.51	5.75	0.0
Merged-chr2-71368464-2	chr2	71367968	71368968	+	803.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172436)	promoter-TSS (NM_172436)	-914.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	32.61	30.87	14.8	76.92	76.04	69.13	72.88	103.91	71.82
Merged-chr19-29252340-4	chr19	29251829	29252829	+	803.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048177, intron 1 of 23)	intron (NM_001048177, intron 1 of 23)	526.0	NM_008413	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	181.91	162.66	243.26	143.71	94.7	204.97	191.17	166.7	134.9
Merged-chr2-122572035-3	chr2	122571527	122572527	+	803.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39250.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	105.26	107.82	72.15	98.51	70.44	66.71	71.82	96.83	40.59
Merged-chr2-128367988-3	chr2	128367467	128368467	+	803.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	L3b|LINE|CR1	61384.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	18.88	9.68	7.4	12.82	7.0	24.92	13.73	12.82	2.5
Merged-chr10-61492292-3	chr10	61491800	61492800	+	803.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153542, intron 2 of 4)	intron (NM_153542, intron 2 of 4)	16467.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	5.15	2.3	2.77	3.37	1.4	0.8	3.17	6.63	0.0
Merged-chr14-20697166-3	chr14	20696662	20697662	+	803.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028428, intron 2 of 2)	intron (NM_028428, intron 2 of 2)	2194.0	NM_028428	73068.0	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	18.31	20.74	18.5	18.89	13.06	19.29	19.01	13.71	6.25
Merged-chrX-42150020-2	chrX	42149535	42150535	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021465)	promoter-TSS (NM_021465)	-119.0	NM_001290713	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	215.09	249.75	281.19	165.98	173.07	198.54	228.14	200.3	197.98
Merged-chr13-31228085-1	chr13	31227585	31228585	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	intron (NR_045957, intron 1 of 2)	13001.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	33.18	35.02	31.45	26.31	35.45	14.47	16.9	17.69	8.12
Merged-chr16-21701999-2	chr16	21701498	21702498	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-7333.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	2.86	4.15	3.7	14.84	6.06	3.22	6.34	4.86	3.75
Merged-chr2-103673843-2	chr2	103673353	103674353	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	87417.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	14.3	8.75	16.65	6.07	3.73	6.43	15.84	8.84	3.75
Merged-chr8-11071283-1	chr8	11070783	11071783	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62853.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.57	2.76	9.25	4.72	4.2	3.22	6.34	0.88	6.25
Merged-chr17-45735593-2	chr17	45735135	45736135	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	1129.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	4.0	2.76	4.62	8.77	1.87	4.82	8.45	4.42	3.75
Merged-chr5-26537910-2	chr5	26537423	26538423	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44609.0	NR_029445	75942.0	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	2.29	1.84	1.85	4.72	3.73	7.23	4.22	1.33	0.0
Merged-chr10-87960203-3	chr10	87959669	87960669	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6502.0	NR_000040	22172.0	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	22.31	29.03	16.65	21.59	8.4	20.9	21.12	18.13	20.61
Merged-chr5-143511720-2	chr5	143511218	143512218	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	16275.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	34.32	35.94	23.12	49.93	39.19	33.76	30.63	33.6	26.23
Merged-chr2-62635487-1	chr2	62634987	62635987	+	803.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027835, intron 2 of 15)	intron (NM_027835, intron 2 of 15)	10768.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	9.15	6.91	4.62	12.14	6.53	12.06	9.51	7.52	11.24
Merged-chr15-78778576-2	chr15	78778010	78779010	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130859, intron 17 of 20)	(TCTCCC)n|Simple_repeat|Simple_repeat	-5065.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	2.29	0.46	0.0	0.67	0.93	5.63	4.22	4.42	2.5
Merged-chr1-151339010-2	chr1	151338499	151339499	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5487.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	39.47	46.08	26.82	43.86	56.45	56.27	35.91	45.99	54.96
Merged-chr9-92485065-1	chr9	92484565	92485565	+	803.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178711, intron 6 of 8)	intron (NM_178711, intron 6 of 8)	27687.0	NM_178711	235527.0	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	1.14	2.3	2.77	4.05	2.33	1.61	4.22	0.88	5.0
Merged-chr4-137879800-2	chr4	137879258	137880258	+	803.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	17521.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	12.59	13.82	9.25	0.67	4.2	7.23	23.24	20.78	29.35
Merged-chr6-26205725-3	chr6	26205227	26206227	+	803.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	274301.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	32.04	34.1	35.15	35.76	26.59	36.97	38.02	44.66	35.6
Merged-chr13-5873894-3	chr13	5873393	5874393	+	803.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12404.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.86	7.83	6.47	6.75	11.66	5.63	7.39	4.86	2.5
Merged-chr2-17936687-2	chr2	17936184	17937184	+	803.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60274.0	NM_026627	68231.0	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	9.15	8.75	11.1	6.75	14.46	8.04	3.17	10.17	11.24
Merged-chr12-24630397-2	chr12	24629895	24630895	+	803.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20976.0	NM_178357	194655.0	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	4.0	3.69	0.0	4.72	3.73	3.22	1.06	0.88	0.0
Merged-chr1-23259852-3	chr1	23259351	23260351	+	803.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12418.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	16.59	7.83	8.32	6.07	4.67	12.86	6.34	4.86	2.5
Merged-chr14-65414485-3	chr14	65413974	65414974	+	803.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010932, intron 1 of 3)	Lx4A|LINE|L1	10998.0	NM_001205075	18155.0	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	3.43	3.23	0.0	5.4	2.8	3.22	2.11	2.21	2.5
Merged-chr15-91179429-3	chr15	91178932	91179932	+	803.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	12575.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	83.52	99.53	58.27	118.08	135.29	109.32	149.98	154.76	77.44
Merged-chr9-74905053-3	chr9	74904545	74905545	+	803.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43124.0	NM_008262	15379.0	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	4.58	4.61	2.77	8.1	1.4	1.61	4.22	0.88	3.12
Merged-chr1-183599412-3	chr1	183598916	183599916	+	803.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149561.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	4.0	4.61	5.55	6.07	1.87	6.43	8.45	9.73	8.74
Merged-chr12-85746477-2	chr12	85745981	85746981	+	803.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145447)	promoter-TSS (NM_145447)	-58.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	29.17	11.52	12.95	31.04	9.8	11.25	21.12	4.86	6.25
Merged-chr13-119342071-2	chr13	119341583	119342583	+	803.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308506, intron 14 of 16)	B3A|SINE|B2	66928.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	3.43	1.38	4.62	7.42	0.93	1.61	5.28	1.77	5.0
Merged-chr8-107066297-2	chr8	107065797	107066797	+	803.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025458)	promoter-TSS (NM_025458)	-653.0	NM_025458	66269.0	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	3.43	2.3	3.7	0.67	2.8	7.23	2.11	0.44	1.25
Merged-chr13-93901523-2	chr13	93901030	93902030	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	110753.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	12.59	9.22	5.55	20.92	11.66	12.06	7.39	7.52	3.75
Merged-chr1-165707497-1	chr1	165706997	165707997	+	803.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	597.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	126.42	111.97	127.64	122.8	95.17	143.07	147.87	157.85	96.8
Merged-chr8-33668414-1	chr8	33667914	33668914	+	803.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	15176.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	2.86	1.38	5.55	4.72	1.4	1.61	24.29	26.97	13.74
Merged-chr2-125775144-3	chr2	125774624	125775624	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177608, intron 2 of 17)	intron (NM_177608, intron 2 of 17)	7746.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	9.72	20.27	35.15	14.17	18.19	27.33	8.45	12.82	11.87
Merged-chr11-11557321-1	chr11	11556821	11557821	+	803.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68055.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	5.15	10.14	10.17	10.8	5.13	8.04	7.39	8.84	11.24
Merged-chr8-121116110-3	chr8	121115625	121116625	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013519)	promoter-TSS (NM_013519)	-46.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	4.0	3.69	1.85	0.67	0.93	1.61	2.11	1.33	1.25
Merged-chr9-88546374-3	chr9	88545880	88546880	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-1640.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	2.86	5.99	8.32	3.37	4.2	0.0	3.17	0.88	2.5
Merged-chr5-73293757-1	chr5	73293257	73294257	+	803.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023429, intron 1 of 8)	intron (NM_023429, intron 1 of 8)	963.0	NM_001159888	68095.0	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	52.63	41.47	18.5	29.01	33.12	8.84	38.02	51.29	23.11
Merged-chr11-50345647-3	chr11	50345142	50346142	+	803.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12237.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	20.02	19.81	9.25	19.57	16.33	19.29	35.91	29.63	17.49
Merged-chr2-152757224-3	chr2	152756750	152757750	+	803.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 3 of 4)	intron (NM_053091, intron 3 of 4)	3077.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	40.62	25.8	11.1	34.41	25.19	6.43	38.02	17.24	6.25
Merged-chr3-13583874-2	chr3	13583371	13584371	+	803.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	68994.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	5.72	5.53	1.85	8.77	11.2	4.82	2.11	2.21	7.49
Merged-chr9-65525852-2	chr9	65525368	65526368	+	803.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54219.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	16.59	17.05	27.75	11.47	16.33	30.54	24.29	14.15	14.99
Merged-chr1-53743195-2	chr1	53742701	53743701	+	803.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36417.0	NM_001252070	627872.0	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	19.45	24.42	18.5	3.37	7.93	0.8	28.52	35.82	18.74
Merged-chr2-121509785-3	chr2	121509297	121510297	+	803.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290987, intron 1 of 11)	intron (NM_001290987, intron 1 of 11)	3074.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	29.17	18.43	18.5	12.14	24.26	12.86	15.84	6.63	12.49
Merged-chr11-3180802-2	chr11	3180312	3181312	+	803.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 4 of 32)	PB1D10|SINE|Alu	12651.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	18.88	23.96	67.52	24.29	28.92	56.27	1.06	1.33	43.72
Merged-chr18-60813014-2	chr18	60812484	60813484	+	803.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001198984)	TTS (NM_001198984)	908.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	13.16	10.6	27.75	0.67	4.2	8.04	9.51	1.77	8.74
Merged-chr12-111458800-2	chr12	111458292	111459292	+	803.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16131.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	13.73	7.37	14.8	8.1	5.6	3.22	14.79	9.73	13.74
Merged-chr11-113648346-3	chr11	113647824	113648824	+	803.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1205.0	NM_013581	16834.0	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	7.44	6.45	3.7	2.02	3.27	4.82	9.51	1.77	6.25
Merged-chr7-44952165-3	chr7	44951648	44952648	+	803.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077591, intron 5 of 10)	intron (NM_001077591, intron 5 of 10)	8908.0	NM_011651	22116.0	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	8.01	7.37	4.62	10.12	6.53	13.66	19.01	10.17	16.24
Merged-chr14-105732726-6	chr14	105732257	105733257	+	803.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108987.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	57.78	43.77	29.6	49.93	30.79	40.19	34.85	40.24	18.74
Merged-chr7-101092840-3	chr7	101092306	101093306	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15969.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	38.9	41.47	55.5	35.76	34.52	38.58	35.91	28.3	23.11
Merged-chr11-31734283-3	chr11	31733758	31734758	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62396.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	26.31	23.5	25.9	29.01	19.59	16.88	44.36	31.84	7.49
Merged-chr4-56059094-3	chr4	56058633	56059633	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-526658.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	43.48	37.32	30.52	15.52	25.19	22.51	86.61	82.24	45.59
Merged-chr9-95614151-3	chr9	95613622	95614622	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23506.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	42.33	29.03	42.55	35.09	27.52	44.21	32.74	20.34	24.98
Merged-chr8-125199427-3	chr8	125198918	125199918	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	145223.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	25.17	28.11	24.05	86.36	111.5	94.85	8.45	3.98	4.37
Merged-chr6-83616671-3	chr6	83616179	83617179	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	39437.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	16.02	9.22	2.77	10.8	12.6	7.23	10.56	1.77	3.75
Merged-chr11-78916599-3	chr11	78916087	78917087	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4200.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	1.14	1.84	3.7	4.72	3.27	14.47	4.22	3.1	0.0
Merged-chr9-100395882-3	chr9	100395395	100396395	+	803.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90578.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	1.14	1.84	3.7	2.02	3.27	1.61	4.22	0.44	0.0
Merged-chr1-106815033-2	chr1	106814537	106815537	+	803.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18312.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	69.22	65.89	45.32	68.82	51.32	49.83	43.3	28.3	32.48
Merged-chr18-80706740-3	chr18	80706230	80707230	+	803.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	1443.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	44.05	53.45	14.8	56.0	38.72	35.37	49.64	45.54	37.47
Merged-chr13-21782714-3	chr13	21782199	21783199	+	803.111084	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178207)	TTS (NM_178207)	698.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	78.94	100.45	53.65	60.05	73.71	49.83	114.07	140.17	71.2
Merged-chr10-30620065-3	chr10	30619568	30620568	+	803.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1702.0	NM_025798	66847.0	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	36.61	23.96	27.75	31.71	14.0	23.31	35.91	35.37	24.98
Merged-chr13-23760279-3	chr13	23759797	23760797	+	803.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178192)	TTS (NM_178192)	952.0	NM_178192	326619.0	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	98.97	75.57	64.75	76.92	55.51	62.7	101.39	125.13	91.81
Merged-chr5-122548827-3	chr5	122548325	122549325	+	803.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46600.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	37.18	43.77	40.7	37.11	41.05	49.83	26.4	24.76	33.72
Merged-chr4-135129011-3	chr4	135128522	135129522	+	803.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	8377.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	5.15	1.38	4.62	6.07	3.27	0.0	0.0	0.0	3.75
Merged-chr3-59130554-3	chr3	59130066	59131066	+	803.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001287124, exon 1 of 2)	5' UTR (NM_001287124, exon 1 of 2)	196.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	48.62	92.16	74.92	60.72	56.45	31.35	74.99	83.57	22.48
Merged-chr1-55406746-3	chr1	55406189	55407189	+	803.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	743.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	21.17	24.88	25.9	26.31	40.12	40.99	26.4	23.43	16.24
Merged-chr15-78979130-1	chr15	78978630	78979630	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039156, intron 12 of 24)	intron (NM_001039156, intron 12 of 24)	-3926.0	NM_001024716	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	2.29	3.23	1.85	2.7	0.0	6.43	5.28	3.1	11.24
Merged-chr17-43554713-1	chr17	43554213	43555213	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11074.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	14.3	5.07	1.85	12.82	14.93	20.09	9.51	6.19	10.62
Merged-chr6-54327861-3	chr6	54327355	54328355	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030024, intron 1 of 1)	CpG	843.0	NM_030024	78004.0	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	1.72	3.23	1.85	2.7	0.93	6.43	5.28	3.1	3.12
Merged-chr12-85974192-3	chr12	85973700	85974700	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	MLT1F|LTR|ERVL-MaLR	104841.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	18.31	29.03	32.37	80.97	89.57	82.79	52.81	69.42	33.72
Merged-chr18-54722129-2	chr18	54721623	54722623	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110379.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	2.29	4.61	12.95	26.31	18.19	33.76	8.45	3.98	9.37
Merged-chr5-105648907-1	chr5	105648407	105649407	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51062.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	15.45	11.52	5.55	18.22	14.46	18.49	16.9	11.05	11.24
Merged-chr7-128305110-2	chr7	128304607	128305607	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6976.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	1.14	3.23	0.0	2.02	0.47	0.0	3.17	2.21	1.25
Merged-chr5-27792533-1	chr5	27792033	27793033	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018878)	promoter-TSS (NM_018878)	-983.0	NM_018878	55982.0	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	36.04	62.67	53.65	39.13	75.11	45.82	83.44	76.49	36.85
Merged-chr5-135478518-1	chr5	135478018	135479018	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	66604.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	232.83	190.76	192.39	228.73	160.01	163.97	168.99	239.21	138.02
Merged-chr3-65956627-1	chr3	65956127	65957127	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	1622.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	93.24	135.01	73.07	82.99	80.71	69.93	95.06	120.71	99.92
Merged-chr16-23226219-1	chr16	23225719	23226719	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152126)	promoter-TSS (NR_152126)	198.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	90.96	105.52	60.12	97.83	89.1	122.18	107.73	131.77	81.81
Merged-chr18-56727444-1	chr18	56726944	56727944	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	19631.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.58	1.84	5.55	0.67	0.93	3.22	2.11	4.42	4.37
Merged-chr4-43042629-1	chr4	43042129	43043129	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-2328.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	48.62	58.52	34.22	22.94	17.26	49.03	48.58	47.31	30.6
Merged-chr14-47358142-1	chr14	47357642	47358642	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15718.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	56.06	53.45	58.27	53.3	37.32	64.3	8.45	5.31	9.99
Merged-chr9-108936187-1	chr9	108935687	108936687	+	803.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025407)	promoter-TSS (NM_025407)	-461.0	NM_025407	22273.0	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	22.31	16.13	11.1	14.17	10.73	12.06	11.62	11.5	3.12
Merged-chr10-78312088-1	chr10	78311588	78312588	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	28119.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	11.44	1.38	4.62	6.75	2.8	17.68	5.28	1.33	6.25
Merged-chr13-105218786-1	chr13	105218286	105219286	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	74228.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	14.3	10.14	12.95	20.24	9.8	11.25	23.24	11.94	8.74
Merged-chr15-85001554-3	chr15	85001050	85002050	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13579.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	3.43	1.38	1.85	1.35	0.47	2.41	5.28	1.77	2.5
Merged-chr1-9797227-3	chr1	9796722	9797722	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177547)	promoter-TSS (NM_177547)	-908.0	NM_133220	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	78.37	101.83	48.1	71.52	66.71	45.82	63.37	83.57	58.71
Merged-chr2-59613070-3	chr2	59612559	59613559	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	1017.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	19.45	16.59	20.35	24.29	25.19	21.7	32.74	30.07	12.49
Merged-chr19-10847328-1	chr19	10846828	10847828	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	RLTR17B_Mm|LTR|ERVK	4784.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	18.31	10.14	8.32	14.17	2.8	5.63	9.51	9.29	6.25
Merged-chr1-184771780-1	chr1	184771280	184772280	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39287.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	8.58	5.53	7.4	2.7	1.87	3.22	7.39	0.44	0.62
Merged-chr4-35018647-1	chr4	35018147	35019147	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-107166.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	1.14	1.84	0.92	2.7	1.87	8.04	0.0	2.65	1.87
Merged-chr10-59590044-3	chr10	59589551	59590551	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033259, intron 1 of 7)	MLT1N2|LTR|ERVL-MaLR	26641.0	NM_001033259	215999.0	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	56.06	43.31	35.15	49.93	55.51	33.76	46.47	59.69	27.48
Merged-chr3-41409026-1	chr3	41408526	41409526	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	46.34	48.38	16.65	89.06	78.84	41.8	41.19	30.07	8.12
Merged-chr8-120495002-1	chr8	120494502	120495502	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	6136.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	14.3	11.52	14.8	14.17	8.86	11.25	14.79	7.52	6.25
Merged-chr9-61373753-2	chr9	61373327	61374327	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 1 of 19)	CpG	1461.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	33.18	22.58	24.97	22.27	10.73	21.7	15.84	18.57	8.12
Merged-chr2-129295312-1	chr2	129294812	129295812	+	803.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181589, intron 2 of 8)	ID4_|SINE|ID	1900.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	4.0	3.23	0.0	4.72	2.8	3.22	5.28	1.33	3.12
Merged-chr5-45498334-1	chr5	45497834	45498834	+	803.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024434, intron 4 of 12)	intron (NM_024434, intron 4 of 12)	4960.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	24.03	6.45	11.1	14.17	14.0	22.51	12.67	2.65	14.99
Merged-chr5-24389511-3	chr5	24389027	24390027	+	802.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2616.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	4.58	4.15	2.77	6.75	2.8	9.65	3.17	4.86	0.0
Merged-chr2-30626165-3	chr2	30625633	30626633	+	802.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31089.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	28.6	9.68	1.85	49.93	25.66	12.06	21.12	21.67	18.74
Merged-chr5-16309785-3	chr5	16309297	16310297	+	802.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110843, intron 12 of 38)	intron (NM_001110843, intron 12 of 38)	-243698.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.0	3.69	0.0	1.35	3.73	3.22	4.22	1.77	0.0
Merged-chr6-67074070-2	chr6	67073550	67074550	+	802.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-36643.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	3.43	0.46	1.85	4.72	2.8	4.82	3.17	2.65	3.75
Merged-chr16-24435524-3	chr16	24435011	24436011	+	802.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-12580.0	NM_001145952	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	44.62	36.86	20.35	49.25	37.79	31.35	26.4	27.86	6.25
Merged-chr9-113727199-3	chr9	113726688	113727688	+	802.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-14285.0	NM_001286599	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	9.72	6.91	18.5	7.42	7.93	7.23	12.67	11.94	7.49
Merged-chr7-16782681-3	chr7	16782135	16783135	+	802.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	1289.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	8.58	7.37	9.25	11.47	8.86	8.04	12.67	3.98	12.49
Merged-chr7-122127955-2	chr7	122127429	122128429	+	802.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001289842, exon 4 of 12)	exon (NM_001289842, exon 4 of 12)	5017.0	NM_001289844	233826.0	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	49.2	47.46	51.8	53.98	74.64	69.93	46.47	60.13	51.84
Merged-chrX-169879590-2	chrX	169879092	169880092	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290506)	promoter-TSS (NM_001290506)	-27.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.57	0.92	2.77	6.07	3.27	3.22	5.28	10.17	3.75
Merged-chr14-75722218-2	chr14	75721707	75722707	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 15 of 22)	intron (NM_177381, intron 15 of 22)	32286.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	6.86	2.76	0.0	3.37	6.53	3.22	9.51	7.07	3.75
Merged-chr11-86658038-2	chr11	86657540	86658540	+	802.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	B3|SINE|B2	13235.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	19.45	17.51	11.1	27.66	20.06	16.08	26.4	23.43	11.87
Merged-chr2-13785470-3	chr2	13784959	13785959	+	802.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145838, intron 2 of 7)	intron (NM_145838, intron 2 of 7)	8061.0	NM_145838	241230.0	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	36.04	29.95	12.02	14.17	14.93	4.82	13.73	8.4	15.61
Merged-chr2-102707525-1	chr2	102707025	102708025	+	802.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	1087.0	NM_001077515	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.15	1.38	1.85	9.45	3.27	8.04	3.17	4.86	0.0
Merged-chr8-126757128-1	chr8	126756628	126757628	+	802.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91892.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	30.32	22.58	29.6	44.53	20.06	16.88	22.18	12.82	17.49
Merged-chr10-4611535-1	chr10	4611035	4612035	+	802.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302532)	promoter-TSS (NM_001302532)	-454.0	NM_001302532	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	24.03	34.1	31.45	26.31	25.66	28.94	19.01	17.69	11.24
Merged-chr5-102052347-3	chr5	102051856	102052856	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	17565.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	79.52	89.39	80.47	105.26	66.24	111.73	142.59	116.73	65.58
Merged-chr4-149306992-4	chr4	149306532	149307532	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008441, intron 1 of 20)	intron (NM_008441, intron 1 of 20)	666.0	NM_207682	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	159.03	128.1	106.37	159.23	98.9	82.79	103.51	80.92	49.96
Merged-chr15-72810823-3	chr15	72810335	72811335	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_002864)	promoter-TSS (NR_002864)	-511.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	132.72	223.94	125.79	138.32	184.74	132.63	164.76	254.69	108.04
Merged-chr12-99315125-2	chr12	99314611	99315611	+	802.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	134963.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	13.73	5.07	11.1	7.42	8.4	3.22	6.34	5.31	5.0
Merged-chr13-51736626-3	chr13	51736108	51737108	+	802.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	57139.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	13.73	17.51	16.65	28.34	16.33	19.29	26.4	6.63	17.49
Merged-chr8-108704636-5	chr8	108704144	108705144	+	802.693359	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10000.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	80.66	54.37	97.12	84.34	33.59	48.23	120.41	39.8	52.46
Merged-chr7-96296139-1	chr7	96295639	96296639	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	MIR|SINE|MIR	-9528.0	NR_105818	102465210.0		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	2.29	2.3	0.0	1.35	1.87	1.61	2.11	0.44	4.37
Merged-chr9-47715580-1	chr9	47715080	47716080	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	102628.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	19.45	19.81	20.35	35.76	51.32	27.33	32.74	22.99	39.97
Merged-chr14-70850416-1	chr14	70849916	70850916	+	802.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2517.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	4.0	9.68	16.65	10.8	12.6	7.23	7.39	3.54	3.75
Merged-chr4-127169163-2	chr4	127168668	127169668	+	802.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-36.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	5.15	1.38	6.47	4.05	0.47	9.65	4.22	0.88	6.87
Merged-chr9-113783878-2	chr9	113783391	113784391	+	802.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	intron (NM_001114347, intron 6 of 39)	-9439.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	28.6	22.58	13.87	22.27	16.33	20.9	10.56	18.13	13.74
Merged-chr10-21995772-8	chr10	21995321	21996321	+	802.65625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161850, exon 4 of 12)	exon (NM_001161850, exon 4 of 12)	1155.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	52.63	54.37	37.0	79.62	55.98	57.07	91.89	73.4	29.35
Merged-chr18-33431500-2	chr18	33431001	33432001	+	802.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	32133.0	NM_001267717	27528.0	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	7.44	4.61	1.85	3.37	3.27	12.06	3.17	1.33	6.25
Merged-chr15-58585673-3	chr15	58585164	58586164	+	802.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	170196.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	17.73	10.14	11.1	12.82	4.2	0.8	11.62	6.19	6.25
Merged-chr4-43563286-3	chr4	43562780	43563780	+	802.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011602)	promoter-TSS (NM_011602)	646.0	NM_013497	12913.0	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	120.7	103.68	99.89	74.22	55.51	69.93	95.06	147.24	60.58
Merged-chr10-66848392-1	chr10	66847892	66848892	+	802.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	71992.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	32.61	17.51	20.35	29.69	32.19	25.72	46.47	41.56	13.74
Merged-chr1-135283527-3	chr1	135283055	135284055	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	CpG	529.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	288.89	307.34	350.56	294.18	293.43	352.86	298.9	290.95	257.31
Merged-chr16-33875978-3	chr16	33875472	33876472	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010580, exon 4 of 15)	exon (NM_010580, exon 4 of 15)	46307.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	16.59	12.9	9.25	17.54	7.46	8.04	14.79	10.61	3.12
Merged-chr18-9732188-3	chr18	9731689	9732689	+	802.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	24541.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	41.76	37.32	41.62	95.81	108.23	101.28	24.29	25.2	6.87
Merged-chr18-42792216-3	chr18	42791735	42792735	+	802.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	107271.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	2.29	1.84	3.7	6.75	6.53	1.61	4.22	3.1	3.12
Merged-chr12-34725325-3	chr12	34724867	34725867	+	802.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L2|LINE|L2	191728.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	25.17	29.49	13.87	24.29	23.79	10.45	25.35	16.36	14.36
Merged-chr4-139259076-1	chr4	139258576	139259576	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 3 of 9)	intron (NM_001037761, intron 3 of 9)	51632.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	13.16	7.83	12.02	8.1	5.6	14.47	16.9	6.19	9.99
Merged-chr6-129418118-2	chr6	129417634	129418634	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205363, intron 4 of 6)	intron (NM_001205363, intron 4 of 6)	9272.0	NM_001205364	232414.0	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	18.88	31.33	22.2	21.59	23.79	24.92	34.85	38.47	23.73
Merged-chr12-85380518-3	chr12	85379997	85380997	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-5780.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	64.07	68.66	54.57	89.06	72.31	95.65	41.19	53.94	41.22
Merged-chr1-171463357-3	chr1	171462843	171463843	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172647, exon 10 of 10)	3' UTR (NM_172647, exon 10 of 10)	25782.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	4.58	9.68	11.1	2.7	3.73	0.0	4.22	7.07	3.75
Merged-chr19-19111321-1	chr19	19110821	19111821	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001043354)	promoter-TSS (NM_001043354)	-125.0	NM_001043354	225998.0	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	1.72	1.38	4.62	1.35	0.0	3.22	2.11	1.33	2.5
Merged-chr7-3948388-1	chr7	3947888	3948888	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32887.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	6.29	8.29	1.85	10.12	7.93	11.25	4.22	5.31	2.5
Merged-chr15-96599096-1	chr15	96598596	96599596	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166456, intron 4 of 15)	intron (NM_001166456, intron 4 of 15)	42866.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	4.0	8.75	6.47	8.1	7.46	9.65	9.51	5.75	5.0
Merged-chr5-150900895-1	chr5	150900395	150901395	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-51712.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	11.44	9.68	4.62	24.96	15.86	15.27	16.9	15.92	5.62
Merged-chr9-111058697-2	chr9	111058161	111059161	+	802.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1143.0	NM_001302376	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	377.56	319.32	241.41	371.09	245.85	242.74	307.35	351.08	143.64
Merged-chr5-75981115-2	chr5	75980596	75981596	+	802.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	6.29	4.15	1.85	8.77	3.73	0.0	6.34	0.0	5.0
Merged-chr1-183671441-3	chr1	183670938	183671938	+	802.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77539.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	6.29	11.98	7.4	11.47	6.53	9.65	25.35	12.38	12.49
Merged-chr2-150668077-4	chr2	150667525	150668525	+	802.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080575, exon 1 of 14)	exon (NM_080575, exon 1 of 14)	215.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	21.17	14.28	11.1	53.98	34.99	40.99	24.29	16.36	14.36
Merged-chr2-73459408-2	chr2	73458927	73459927	+	802.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-5538.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	31.46	39.17	55.5	35.76	21.46	39.39	57.03	48.2	27.48
Merged-chr5-74790470-1	chr5	74789970	74790970	+	802.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87567.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	5.72	5.07	4.62	7.42	7.0	7.23	2.11	1.77	0.0
Merged-chr16-11067076-3	chr16	11066560	11067560	+	802.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009223, intron 1 of 1)	CpG	762.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	71.51	55.29	60.12	78.27	52.72	48.23	60.2	46.43	24.36
Merged-chr7-127993723-4	chr7	127993140	127994140	+	802.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023258, exon 1 of 3)	exon (NM_023258, exon 1 of 3)	227.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	55.49	49.3	64.75	51.95	51.78	62.7	58.09	48.2	26.23
Merged-chr19-43920694-2	chr19	43920199	43921199	+	802.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028029, intron 1 of 15)	intron (NM_028029, intron 1 of 15)	19499.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	28.6	32.25	14.8	47.23	47.58	54.66	26.4	23.88	9.99
Merged-chr8-18935168-2	chr8	18934696	18935696	+	802.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15675.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	19.45	11.98	16.65	18.89	11.2	10.45	10.56	6.19	5.0
Merged-chr8-60973640-3	chr8	60973154	60974154	+	802.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	MTC|LTR|ERVL-MaLR	9657.0	NM_173873	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	6.86	10.6	9.25	5.4	7.46	10.45	5.28	6.19	7.49
Merged-chr19-53312696-3	chr19	53312175	53313175	+	802.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	1230.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	171.04	138.7	112.84	172.73	89.57	134.23	143.64	95.51	101.17
Merged-chr14-104460428-1	chr14	104459928	104460928	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7571.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	4.0	1.38	1.85	2.7	4.2	1.61	1.06	2.21	3.12
Merged-chr19-40659186-1	chr19	40658686	40659686	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009848)	promoter-TSS (NM_009848)	-584.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	57.21	90.31	46.25	52.63	74.64	65.11	34.85	51.29	36.22
Merged-chr3-104165568-1	chr3	104165068	104166068	+	802.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133853, intron 1 of 21)	L2c|LINE|L2	54838.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	6.29	3.69	1.85	6.75	2.33	8.04	7.39	7.96	0.0
Merged-chr18-68898074-2	chr18	68897569	68898569	+	802.275024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	ORR1E|LTR|ERVL-MaLR	53459.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	10.87	6.45	8.32	4.72	7.46	0.0	0.0	2.21	6.25
Merged-chr2-112259730-2	chr2	112259212	112260212	+	802.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172521)	promoter-TSS (NM_172521)	-421.0	NM_172521	213765.0	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	8.01	7.37	19.42	9.45	14.0	8.04	10.56	12.82	16.24
Merged-chr11-59142001-2	chr11	59141500	59142500	+	802.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5625.0	NM_199152	380698.0	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	5.15	0.92	1.85	2.7	1.4	3.22	4.22	1.77	5.0
Merged-chr7-141440806-3	chr7	141440317	141441317	+	802.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360523, exon 8 of 16)	exon (NM_001360523, exon 8 of 16)	-2943.0	NM_001360724	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	4.58	4.61	3.7	2.02	2.33	1.61	4.22	2.21	0.0
Merged-chr4-134552226-3	chr4	134551726	134552726	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029100)	promoter-TSS (NM_029100)	-60.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	26.89	21.66	33.3	47.23	28.46	46.62	23.24	17.24	11.24
Merged-chr2-32132811-3	chr2	32132307	32133307	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-18341.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	4.0	1.84	3.7	2.02	1.87	4.82	6.34	1.33	3.75
Merged-chr2-26360128-3	chr2	26359650	26360650	+	802.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037747)	promoter-TSS (NM_001037747)	-603.0	NM_001037747	332579.0	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	16.02	16.59	18.5	26.99	14.46	16.88	19.01	16.36	15.61
Merged-chr2-124708192-4	chr2	124707811	124708811	+	802.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54730.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	54.92	89.39	85.1	76.92	59.25	88.42	105.62	86.66	73.07
Merged-chr13-111943648-1	chr13	111943148	111944148	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	75712.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	53.77	40.55	23.12	30.36	22.39	12.86	15.84	14.15	7.49
Merged-chr15-100133710-2	chr15	100133227	100134227	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 3 of 37)	G-rich|Low_complexity|Low_complexity	-20669.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	25.74	23.04	12.02	41.16	36.39	11.25	19.01	33.16	26.23
Merged-chr11-54972584-3	chr11	54972069	54973069	+	802.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9629.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	9.72	6.45	1.85	6.07	2.8	4.02	9.51	4.86	3.75
Merged-chr17-66128876-2	chr17	66128360	66129360	+	802.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003919, intron 2 of 26)	intron (NM_001003919, intron 2 of 26)	5340.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	2.29	8.29	3.7	8.1	5.13	5.63	9.51	7.52	2.5
Merged-chr16-4894756-2	chr16	4894258	4895258	+	802.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	8658.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	42.9	30.41	49.95	75.57	58.78	94.04	50.7	41.12	38.72
Merged-chr4-141535453-2	chr4	141534947	141535947	+	802.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	intron (NM_001347235, intron 1 of 14)	3150.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	8.58	4.61	2.77	6.07	6.06	3.22	8.45	8.84	5.0
Merged-chr18-12938385-3	chr18	12937887	12938887	+	802.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	3454.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	13.73	19.35	11.1	20.92	32.19	23.31	33.8	26.09	21.23
Merged-chr10-87722509-3	chr10	87722006	87723006	+	802.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135759.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	3.43	7.37	7.4	13.49	3.27	9.65	13.73	8.84	6.87
Merged-chr1-125474336-3	chr1	125473827	125474827	+	802.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-38600.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	17.73	14.28	12.95	58.7	40.59	69.93	73.93	66.33	48.71
Merged-chr19-44408597-5	chr19	44408093	44409093	+	802.090454	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009127)	promoter-TSS (NM_009127)	-884.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	70.36	79.25	44.4	93.11	81.64	94.85	199.62	189.69	58.08
Merged-chr15-78863252-2	chr15	78862768	78863768	+	802.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-7739.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	216.24	246.52	160.02	240.87	207.13	237.12	264.05	355.06	172.99
Merged-chr18-39370869-2	chr18	39370365	39371365	+	802.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 21 of 21)	Charlie4z|DNA|hAT-Charlie	116380.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	15.45	11.98	9.25	8.1	8.86	20.9	13.73	22.11	9.99
Merged-chr10-78600115-3	chr10	78599614	78600614	+	802.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-8150.0	NM_027875	71709.0	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	2.86	1.84	1.85	4.72	4.2	2.41	3.17	3.98	3.75
Merged-chr5-66279810-2	chr5	66279311	66280311	+	802.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302833, intron 7 of 12)	L1MEg|LINE|L1	18970.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	13.73	5.53	7.4	7.42	7.0	3.22	8.45	16.36	9.99
Merged-chr6-117580905-3	chr6	117580422	117581422	+	802.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	85687.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	2.29	4.61	7.4	4.05	1.87	1.61	3.17	4.42	5.0
Merged-chr18-35874581-3	chr18	35874080	35875080	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19893.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	13.73	2.3	0.0	8.77	1.4	4.82	7.39	3.54	5.0
Merged-chr13-102860903-1	chr13	102860403	102861403	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	L2a|LINE|L2	100648.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	10.3	10.14	12.95	6.75	7.93	5.63	7.39	7.52	5.0
Merged-chr1-165626574-1	chr1	165626074	165627074	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	7967.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.58	5.07	2.77	10.12	9.33	14.47	2.11	10.61	5.0
Merged-chr2-132285927-1	chr2	132285427	132286427	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291039)	promoter-TSS (NM_001291039)	-12.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	24.03	14.75	22.2	20.24	7.93	32.96	10.56	9.73	11.24
Merged-chr14-17915285-1	chr14	17914785	17915785	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-66359.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	9.15	5.53	7.4	7.42	4.67	12.86	10.56	3.1	2.5
Merged-chr16-17234736-1	chr16	17234236	17235236	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	1149.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	18.88	14.75	3.7	20.24	14.46	6.43	8.45	13.71	4.37
Merged-chr14-43817980-2	chr14	43817476	43818476	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007894)	TTS (NM_007894)	1663.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	8.58	9.68	3.7	5.4	3.27	7.23	6.34	7.07	5.0
Merged-chr11-35842136-3	chr11	35841585	35842585	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170779, intron 20 of 22)	intron (NM_170779, intron 20 of 22)	-7557.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	2.29	1.84	0.0	6.75	3.73	4.82	3.17	0.88	2.5
Merged-chrX-18957500-2	chrX	18956992	18957992	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	188896.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	4.58	2.3	3.7	4.72	7.93	7.23	2.11	1.33	1.25
Merged-chr4-101254219-3	chr4	101253715	101254715	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	11067.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	68.07	72.8	71.22	35.09	41.99	38.58	52.81	32.72	37.47
Merged-chr16-70104154-1	chr16	70103654	70104654	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-209795.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.0	3.69	3.7	3.37	4.67	4.82	1.06	3.54	7.49
Merged-chr15-12306761-2	chr15	12306252	12307252	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14744.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	6.29	4.61	3.7	24.96	10.73	13.66	4.22	8.4	18.11
Merged-chr2-165318980-1	chr2	165318480	165319480	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080287, intron 1 of 20)	intron (NM_080287, intron 1 of 20)	1846.0	NM_001302752	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	318.06	321.17	297.84	355.58	343.35	268.47	302.07	447.92	211.71
Merged-chr9-35113953-3	chr9	35113463	35114463	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-2765.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	32.04	55.75	22.2	39.13	40.12	45.82	40.14	45.99	64.95
Merged-chr14-67813731-2	chr14	67813235	67814235	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 20 of 51)	intron (NM_177780, intron 20 of 51)	46010.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	8.01	6.45	15.72	2.7	5.13	5.63	4.22	5.75	3.75
Merged-chr12-115617574-1	chr12	115617074	115618074	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78220.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	3.43	3.69	14.8	8.77	13.53	14.47	2.11	0.44	5.0
Merged-chr18-77742754-1	chr18	77742254	77743254	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9284.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	4.58	2.3	1.85	6.07	3.27	0.0	2.11	2.65	1.25
Merged-chr11-100395962-2	chr11	100395460	100396460	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	1830.0	NM_010593	16480.0	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	61.78	63.59	52.72	65.45	42.45	30.54	76.05	50.41	42.47
Merged-chr7-67461610-1	chr7	67461110	67462110	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88752.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	83.52	123.49	88.8	96.48	99.37	128.61	99.28	99.49	89.31
Merged-chr9-84544887-2	chr9	84544387	84545387	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-229511.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.58	1.84	1.85	7.42	7.0	5.63	77.1	30.07	15.61
Merged-chr5-137025291-2	chr5	137024805	137025805	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4990.0	NM_001039385	381677.0	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	4.58	2.3	5.55	2.02	0.93	3.22	3.17	0.88	5.0
Merged-chr11-51889842-2	chr11	51889340	51890340	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-32210.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	29.75	38.25	20.35	41.83	38.25	48.23	30.63	31.84	17.49
Merged-chr16-98107272-1	chr16	98106772	98107772	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24833.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	9.15	4.15	7.4	2.7	1.4	0.0	4.22	2.65	3.75
Merged-chr2-35162371-1	chr2	35161871	35162871	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 30 of 43)	intron (NM_012018, intron 30 of 43)	30137.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	34.9	59.9	48.1	65.45	42.92	35.37	43.3	44.22	26.23
Merged-chr6-50874087-2	chr6	50873583	50874583	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97968.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	4.58	3.23	0.0	2.02	1.87	2.41	3.17	3.1	2.5
Merged-chr10-43701144-1	chr10	43700644	43701644	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	-45014.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	3.43	6.45	7.4	5.4	2.8	4.02	3.17	2.65	3.75
Merged-chr14-60432241-1	chr14	60431741	60432741	+	802.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	53955.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	5.72	4.15	7.4	5.4	5.6	1.61	9.51	9.73	9.99
Merged-chr18-46921763-1	chr18	46921263	46922263	+	802.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033446)	promoter-TSS (NM_001033446)	-52.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	3.43	2.3	0.0	18.89	7.0	8.84	2.11	5.31	2.5
Merged-chr13-24442506-3	chr13	24442007	24443007	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	intron (NM_001111110, intron 11 of 16)	27385.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	13.73	9.22	9.25	12.82	7.46	3.22	13.73	11.94	13.12
Merged-chr15-55552261-2	chr15	55551759	55552759	+	802.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	5053.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	8.58	9.22	14.8	6.75	7.46	6.43	11.62	11.05	13.12
Merged-chr17-87246041-3	chr17	87245537	87246537	+	801.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19910.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	85.81	102.75	61.05	103.23	104.96	109.32	44.36	48.2	36.85
Merged-chr17-70748185-3	chr17	70747684	70748684	+	801.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	98593.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	147.02	142.38	98.05	192.29	193.13	154.33	116.18	98.16	68.7
Merged-chr3-133585068-3	chr3	133584568	133585568	+	801.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-40678.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	10.3	18.43	14.8	17.54	13.06	16.88	19.01	21.22	26.23
Merged-chr10-7076353-2	chr10	7075846	7076846	+	801.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53161.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	2.29	5.53	3.7	6.07	1.87	2.41	2.11	2.65	0.0
Merged-chr15-35296021-2	chr15	35295539	35296539	+	801.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054049)	promoter-TSS (NM_054049)	-73.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	5.72	6.91	0.92	4.05	3.27	0.0	4.22	0.0	3.75
Merged-chr12-4595295-2	chr12	4594801	4595801	+	801.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	2293.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	24.6	38.25	6.47	31.04	34.52	42.6	30.63	38.03	23.11
Merged-chr8-68456820-3	chr8	68456278	68457278	+	801.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172753, intron 4 of 9)	RMER16_Mm|LTR|ERVK	88319.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	8.01	4.15	5.55	11.47	13.06	5.63	3.17	3.1	2.5
Merged-chr9-121839465-3	chr9	121839003	121840003	+	801.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-42.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	13.73	9.22	3.7	5.4	2.33	0.8	11.62	8.4	5.62
Merged-chr15-64071999-2	chr15	64071520	64072520	+	801.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11572.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.58	11.06	11.1	17.54	6.06	11.25	6.34	2.21	3.75
Merged-chr10-118080280-1	chr10	118079780	118080780	+	801.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-61507.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	42.33	57.14	48.1	64.77	36.85	66.71	36.97	29.18	16.86
Merged-chr11-46275498-3	chr11	46275006	46276006	+	801.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 8 of 30)	intron (NM_001252459, intron 8 of 30)	36852.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	1.14	1.38	1.85	2.7	0.0	1.61	3.17	0.0	2.5
Merged-chr14-61529730-3	chr14	61529226	61530226	+	801.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	27160.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	1.72	4.15	5.55	5.4	4.67	1.61	1.06	2.65	4.37
Merged-chr5-121999776-3	chr5	121999285	122000285	+	801.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	48040.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	3.43	4.61	0.0	3.37	2.33	3.22	8.45	2.21	1.25
Merged-chr7-84779702-2	chr7	84779196	84780196	+	801.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73875.0	NM_146415	258410.0	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	12.01	21.2	14.8	17.54	18.19	17.68	7.39	7.07	2.5
Merged-chr9-66877576-3	chr9	66877073	66878073	+	801.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42132.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	68.65	82.48	35.15	109.98	106.36	55.46	49.64	46.87	26.85
Merged-chr15-54952617-3	chr15	54952106	54953106	+	801.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155354)	promoter-TSS (NR_155354)	-342.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	1.72	4.61	2.77	3.37	2.33	0.0	2.11	0.88	5.0
Merged-chr2-18997614-2	chr2	18997123	18998123	+	801.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024323)	promoter-TSS (NR_024323)	498.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	62.35	84.78	91.57	56.68	76.97	69.93	67.6	63.67	54.33
Merged-chr18-68031062-1	chr18	68030562	68031562	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	MTD|LTR|ERVL-MaLR	97889.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.58	8.75	18.5	10.12	8.86	11.25	3.17	1.33	5.0
Merged-chr9-70833821-1	chr9	70833321	70834321	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	100987.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	64.07	68.66	47.17	71.52	48.05	114.94	127.8	73.84	61.83
Merged-chr5-66094048-2	chr5	66093524	66094524	+	801.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	ORR1B1|LTR|ERVL-MaLR	4155.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.15	12.44	9.25	16.19	9.8	16.88	20.07	18.13	19.36
Merged-chr15-86362891-2	chr15	86362396	86363396	+	801.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 6 of 9)	intron (NM_001358062, intron 6 of 9)	85221.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.58	2.3	5.55	4.72	3.73	4.02	1.06	2.65	5.0
Merged-chr17-5843558-5	chr17	5843094	5844094	+	801.73999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 1 of 17)	intron (NM_025664, intron 1 of 17)	2214.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	98.97	86.17	82.32	103.23	107.3	81.18	103.51	85.78	48.09
Merged-chr16-93683698-2	chr16	93683243	93684243	+	801.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173047, intron 1 of 2)	CpG	524.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	43.48	56.68	47.17	78.27	69.98	93.24	58.09	51.29	34.35
Merged-chr4-143119087-3	chr4	143118599	143119599	+	801.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081355, intron 8 of 9)	intron (NM_001081355, intron 8 of 9)	17063.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	11.44	4.61	11.1	5.4	2.33	1.61	6.34	2.21	9.99
Merged-chr2-91517536-1	chr2	91517036	91518036	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9226.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	18.88	23.04	44.4	18.89	15.39	35.37	17.96	16.8	6.25
Merged-chr3-101293948-1	chr3	101293448	101294448	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6009.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.57	3.69	5.55	3.37	2.8	6.43	3.17	1.77	8.74
Merged-chr5-64813624-3	chr5	64813127	64814127	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	10104.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	38.33	44.24	33.3	42.51	20.53	36.97	35.91	39.35	29.35
Merged-chr5-99423179-3	chr5	99422676	99423676	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-170249.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	18.31	13.82	17.57	7.42	9.33	3.22	10.56	9.73	12.49
Merged-chr12-73685433-1	chr12	73684933	73685933	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	100637.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	13.16	12.9	12.95	20.92	12.13	18.49	20.07	17.69	12.49
Merged-chr2-19631406-1	chr2	19630906	19631906	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	26491.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	69.22	76.95	79.55	77.59	56.45	52.25	58.09	73.4	69.32
Merged-chr1-43501496-1	chr1	43500996	43501996	+	801.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	ORR1F|LTR|ERVL-MaLR	55745.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	106.97	131.78	58.27	125.5	93.77	55.46	175.33	207.82	97.43
Merged-chr1-178350985-3	chr1	178350495	178351495	+	801.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	20.02	13.82	14.8	9.45	10.73	6.43	8.45	11.05	13.12
Merged-chr18-38253093-2	chr18	38252596	38253596	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024179, intron 4 of 12)	intron (NM_024179, intron 4 of 12)	-2531.0	NR_027904	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	8.01	14.75	7.4	19.57	14.93	21.7	12.67	10.61	13.74
Merged-chr3-27302889-2	chr3	27302392	27303392	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14185.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	22.31	30.41	11.1	49.25	59.71	58.68	59.15	59.25	32.48
Merged-chr2-152295431-2	chr2	152294928	152295928	+	801.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	1556.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	20.02	18.43	7.4	20.92	17.73	19.29	34.85	27.86	9.99
Merged-chr17-55736867-2	chr17	55736359	55737359	+	801.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13125.0	NM_139138	52614.0	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	30.89	28.57	26.82	34.41	34.99	24.92	29.57	26.53	28.73
Merged-chr3-133548889-4	chr3	133548417	133549417	+	801.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4527.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	44.62	46.54	25.9	28.34	32.19	41.8	33.8	43.33	21.86
Merged-chr12-69871774-3	chr12	69871290	69872290	+	801.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201519, intron 2 of 30)	intron (NM_201519, intron 2 of 30)	-21315.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	4.58	0.92	1.85	4.05	5.13	10.45	9.51	6.63	3.75
Merged-chr14-50862683-3	chr14	50862230	50863230	+	801.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009351, intron 6 of 54)	intron (NM_009351, intron 6 of 54)	7824.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	35.47	40.09	77.7	43.86	34.52	45.82	30.63	35.37	33.1
Merged-chr4-33244189-3	chr4	33243686	33244686	+	801.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	4601.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	28.03	28.11	32.37	26.31	10.73	33.76	40.14	16.8	29.35
Merged-chr19-57356244-2	chr19	57355675	57356675	+	801.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	4724.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	19.45	27.65	29.6	27.66	26.59	47.42	34.85	20.34	24.98
Merged-chr5-136007961-2	chr5	136007468	136008468	+	801.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256096, intron 2 of 10)	ZP3AR|Satellite|Satellite	13168.0	NM_001256098	74198.0	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	8.58	10.14	7.4	26.31	6.53	11.25	2.11	0.88	3.12
Merged-chr8-72375069-3	chr8	72374579	72375579	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289859, intron 16 of 21)	PB1D10|SINE|Alu	46395.0	NM_001122832	13859.0	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	13.16	11.06	5.55	12.82	7.46	29.74	7.39	10.61	12.49
Merged-chr15-75695891-3	chr15	75695394	75696394	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8394.0	NM_001163465	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	21.17	7.83	9.25	10.8	5.6	3.22	10.56	8.84	3.75
Merged-chr7-114479969-3	chr7	114479477	114480477	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	64723.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	7.44	9.68	3.7	24.29	26.59	24.92	5.28	7.07	5.62
Merged-chr12-38931949-3	chr12	38931451	38932451	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148240.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.58	4.15	10.17	4.72	5.13	0.0	4.22	3.1	0.0
Merged-chr10-67126511-3	chr10	67126047	67127047	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207221)	promoter-TSS (NM_207221)	-711.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	63.5	39.17	24.97	63.42	33.12	45.82	53.87	35.82	25.61
Merged-chr1-52748405-3	chr1	52747885	52748885	+	801.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21027.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	6.29	4.15	0.0	8.1	3.73	0.0	4.22	2.21	8.74
Merged-chr5-138187921-2	chr5	138187425	138188425	+	801.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009315)	promoter-TSS (NM_009315)	390.0	NM_178612	66455.0	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	19.45	25.34	19.42	24.96	26.59	32.15	35.91	43.33	36.85
Merged-chr17-28251743-2	chr17	28251249	28252249	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	18995.0	NM_011145	19015.0	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	12.01	4.15	11.1	6.75	4.2	6.43	13.73	6.19	3.75
Merged-chr16-39881761-1	chr16	39881261	39882261	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102603.0	NM_001361282	268890.0	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Gm29907|Lam|Lamp	limbic system-associated membrane protein	protein-coding	2.29	4.61	7.4	6.75	4.2	4.82	0.0	1.77	1.87
Merged-chr4-136431477-2	chr4	136430976	136431976	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285484, intron 1 of 1)	intron (NM_001285484, intron 1 of 1)	6864.0	NM_001285484	15552.0	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	4.58	1.38	3.7	2.02	5.6	0.0	1.06	0.44	1.25
Merged-chr8-85512460-1	chr8	85511960	85512960	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	intron (NM_173866, intron 6 of 11)	19843.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.72	19.35	24.05	16.87	19.59	26.53	16.9	22.55	12.49
Merged-chr9-109100839-2	chr9	109100338	109101338	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172775, exon 3 of 38)	exon (NM_172775, exon 3 of 38)	5402.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	4.0	7.37	2.77	6.07	7.46	4.82	5.28	1.33	3.75
Merged-chr17-81501166-1	chr17	81500666	81501666	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237221.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.01	9.22	16.65	14.17	7.93	5.63	8.45	11.5	3.75
Merged-chr15-58986013-1	chr15	58985513	58986513	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52203.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	10.87	11.52	3.7	34.41	16.79	8.04	8.45	2.21	3.12
Merged-chr2-59425877-2	chr2	59425381	59426381	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39199.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	24.03	17.05	16.65	45.21	26.59	40.99	23.24	20.78	14.99
Merged-chr13-52610650-2	chr13	52610145	52611145	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 1 of 13)	intron (NM_011518, intron 1 of 13)	13763.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	18.31	26.73	43.47	36.43	17.73	39.39	13.73	13.71	18.11
Merged-chr17-83272745-2	chr17	83272250	83273250	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57467.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	10.3	15.67	12.95	14.17	9.8	8.84	13.73	6.19	13.74
Merged-chr5-123675375-2	chr5	123674880	123675880	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 1 of 18)	intron (NM_001359224, intron 1 of 18)	8981.0	NM_019765	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	18.88	27.65	3.7	30.36	19.59	25.72	45.42	42.89	37.47
Merged-chr9-52175592-2	chr9	52175110	52176110	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7499.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	14.3	12.44	11.1	6.75	5.13	3.22	3.17	3.54	5.0
Merged-chr1-171646613-2	chr1	171646101	171647101	+	801.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347184, intron 1 of 5)	intron (NM_001347184, intron 1 of 5)	2398.0	NM_001347184	75345.0	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	17.73	11.52	9.25	8.77	5.13	5.63	30.63	44.22	21.86
Merged-chr12-37248744-2	chr12	37248245	37249245	+	801.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	7106.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	6.86	11.52	4.62	19.57	26.59	16.88	2.11	3.54	1.25
Merged-chr8-70512493-3	chr8	70511999	70512999	+	801.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029366)	TTS (NM_029366)	2013.0	NR_151735	78183.0	Mm.297372	NR_151735		4930522P08Rik	-	RIKEN cDNA 4930522P08 gene	ncRNA	44.62	61.75	38.85	46.56	24.72	29.74	42.25	63.67	38.72
Merged-chr17-65607689-3	chr17	65607163	65608163	+	801.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	5892.0	NM_001355402	30960.0	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	28.6	31.79	37.0	33.74	28.92	34.56	39.08	30.95	23.11
Merged-chr3-38105699-3	chr3	38105216	38106216	+	801.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102403.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	13.73	8.29	7.4	16.19	12.6	13.66	13.73	6.19	7.49
Merged-chr1-157047642-3	chr1	157047137	157048137	+	801.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61013.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	66.93	65.89	81.4	82.32	49.92	83.59	53.87	56.6	39.35
Merged-chr16-62826353-3	chr16	62825813	62826813	+	801.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	11637.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	7.44	6.45	5.55	8.77	6.06	6.43	5.28	3.1	2.5
Merged-chr13-103065704-2	chr13	103065159	103066159	+	801.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 3 of 28)	intron (NM_175171, intron 3 of 28)	268833.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	2.86	2.76	1.85	13.49	3.27	4.82	3.17	0.88	1.25
Merged-chr9-75195851-2	chr9	75195346	75196346	+	801.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010864, intron 31 of 40)	intron (NM_010864, intron 31 of 40)	-36168.0	NM_001081322	208943.0	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	5.72	3.23	7.4	14.17	10.26	9.65	3.17	5.75	9.99
Merged-chr4-78256093-1	chr4	78255593	78256593	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44198.0	NM_011211	19266.0	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	2.29	3.23	0.0	9.45	5.13	3.22	7.39	5.31	3.75
Merged-chr3-106482922-1	chr3	106482422	106483422	+	801.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033207, exon 2 of 2)	non-coding (NR_033207, exon 2 of 2)	472.0	NM_001278941	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	97.82	77.87	43.47	103.91	79.77	77.16	104.56	122.04	59.95
Merged-chr2-20967405-1	chr2	20966905	20967905	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081364, exon 1 of 24)	exon (NM_001081364, exon 1 of 24)	316.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	19.45	11.06	12.02	26.31	18.66	12.86	27.46	16.36	13.12
Merged-chr2-18772592-3	chr2	18772085	18773085	+	801.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11723.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	13.73	8.29	4.62	13.49	7.46	10.45	3.17	1.77	6.25
Merged-chr9-120064756-1	chr9	120064256	120065256	+	801.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	3540.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	30.89	19.35	17.57	37.78	18.19	24.92	8.45	3.1	5.62
Merged-chr17-70818062-3	chr17	70817559	70818559	+	801.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347414, exon 11 of 11)	exon (NM_001347414, exon 11 of 11)	28718.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	25.17	18.43	9.25	27.66	27.99	20.9	14.79	9.29	12.49
Merged-chr13-35478357-2	chr13	35477852	35478852	+	801.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-181510.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	11.44	4.15	4.62	4.72	2.33	4.82	9.51	7.52	3.75
Merged-chr17-25131264-3	chr17	25130737	25131737	+	801.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2154.0	NM_011930	26373.0	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	24.03	20.74	26.82	26.31	14.46	21.7	46.47	63.23	24.36
Merged-chr17-15830324-3	chr17	15829834	15830834	+	801.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3748.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	3.43	4.15	1.85	6.75	3.73	8.04	4.22	3.98	6.25
Merged-chr7-130671487-1	chr7	130670987	130671987	+	801.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-21069.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	5.72	5.99	3.7	6.07	2.33	11.25	11.62	4.42	3.75
Merged-chr8-125870958-2	chr8	125870464	125871464	+	801.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	-26950.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	8.58	3.69	0.0	3.37	0.47	0.0	1.06	0.0	0.0
Merged-chr3-97265167-3	chr3	97264670	97265670	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-37806.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	10.87	5.53	3.7	9.45	1.87	4.82	11.62	14.59	8.74
Merged-chr12-76950498-3	chr12	76950004	76951004	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	11744.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	8.01	15.21	34.22	11.47	22.86	20.9	26.4	30.95	13.74
Merged-chr15-100631658-3	chr15	100631153	100632153	+	801.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033872, intron 2 of 3)	intron (NM_001033872, intron 2 of 3)	3906.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	17.16	26.26	3.7	25.64	20.53	19.29	21.12	18.13	18.74
Merged-chr2-159811851-3	chr2	159811341	159812341	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135500.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	22.31	15.21	16.65	10.8	6.53	1.61	6.34	3.1	4.37
Merged-chr2-73047185-3	chr2	73046672	73047672	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66726.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	10.87	2.3	1.85	12.82	5.13	12.06	7.39	7.07	3.75
Merged-chr8-70844724-3	chr8	70844209	70845209	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032397, intron 9 of 9)	intron (NM_032397, intron 9 of 9)	-4989.0	NM_027560	70807.0	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	8.01	3.69	1.85	8.1	0.93	5.63	3.17	1.33	6.25
Merged-chrX-94731785-1	chrX	94731285	94732285	+	801.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7216.0	NM_001081473	668166.0	Mm.426145	NM_001081473	ENSMUSG00000073062	Zxdb	Zxda	zinc finger, X-linked, duplicated B	protein-coding	7.44	4.15	0.0	0.67	0.47	0.0	2.11	4.86	1.25
Merged-chr13-20508331-1	chr13	20507831	20508831	+	801.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	35341.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	13.73	8.29	11.1	9.45	9.33	9.65	3.17	3.1	1.25
Merged-chr10-121464085-1	chr10	121463585	121464585	+	801.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	12165.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	27.46	17.51	12.95	16.19	7.93	25.72	51.75	34.49	19.36
Merged-chrX-134306243-3	chrX	134305780	134306780	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026239)	TTS (NM_026239)	-1804.0	NM_145924	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	4.58	1.38	6.47	4.72	2.8	2.41	6.34	6.63	7.49
Merged-chr4-154942845-3	chr4	154942309	154943309	+	801.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14732.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	93.24	131.78	106.37	109.3	92.37	98.06	29.57	29.63	21.86
Merged-chr3-158032259-2	chr3	158031804	158032804	+	801.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-532.0	NM_001093753	69207.0	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	216.81	247.9	156.32	183.52	158.61	151.92	204.9	243.19	120.53
Merged-chr3-97931722-3	chr3	97931204	97932204	+	801.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	1531.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	55.49	58.52	51.8	57.35	43.85	46.62	52.81	68.09	28.73
Merged-chr19-10904995-2	chr19	10904493	10905493	+	801.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134129, intron 15 of 15)	intron (NM_134129, intron 15 of 15)	6348.0	NM_001253844	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	39.47	21.2	28.67	31.71	19.59	23.31	24.29	14.59	14.99
Merged-chr2-158773011-3	chr2	158772517	158773517	+	801.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027975, intron 1 of 3)	intron (NM_027975, intron 1 of 3)	4918.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	2.29	0.92	8.32	2.7	2.33	1.61	3.17	0.88	6.25
Merged-chr18-69537550-3	chr18	69537041	69538041	+	801.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	191381.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.72	4.15	12.95	6.07	5.6	4.82	3.17	4.42	5.0
Merged-chr7-10494191-3	chr7	10493697	10494697	+	801.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009577, intron 2 of 3)	intron (NM_009577, intron 2 of 3)	1184.0	NM_009577	22775.0	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	11.44	10.14	5.55	18.89	7.0	4.82	12.67	6.63	8.74
Merged-chr12-52372935-1	chr12	52372435	52373435	+	801.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	107674.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	13.16	6.45	15.72	10.12	7.46	6.43	17.96	14.15	16.86
Merged-chr7-116370559-1	chr7	116370059	116371059	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-36369.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	16.59	11.52	11.1	18.22	5.6	13.66	9.51	7.52	4.37
Merged-chr2-156418565-2	chr2	156418075	156419075	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2334.0	NM_001291122	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	26.89	8.75	0.0	16.19	12.6	20.9	22.18	30.51	7.49
Merged-chr10-18941648-1	chr10	18941148	18942148	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	70315.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.15	3.69	9.25	10.8	4.2	0.8	5.28	3.54	1.25
Merged-chrX-52453501-2	chrX	52453014	52454014	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016697, intron 2 of 7)	intron (NM_016697, intron 2 of 7)	-30999.0	NR_030497	751531.0		NR_030497	ENSMUSG00000076214	Mir717	Mirn717|mir-717|mmu-mir-717	microRNA 717	ncRNA	2.86	0.92	0.0	0.67	2.8	0.0	3.17	0.44	0.0
Merged-chr11-4803581-1	chr11	4803081	4804081	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010898, intron 7 of 15)	intron (NM_010898, intron 7 of 15)	29554.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	14.3	8.29	3.7	13.49	9.8	8.84	7.39	10.61	14.99
Merged-chr19-41375245-1	chr19	41374745	41375745	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	9825.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	28.6	24.88	40.7	31.04	27.99	32.96	31.69	20.34	26.85
Merged-chr14-16534313-1	chr14	16533813	16534813	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	41163.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	4.0	3.23	11.1	1.35	1.87	3.22	2.11	0.88	1.87
Merged-chr2-90517297-1	chr2	90516797	90517797	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-38123.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	52.06	52.53	39.77	54.65	39.19	53.05	90.83	47.31	27.48
Merged-chr14-61649340-1	chr14	61648840	61649840	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-17230.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	165.32	202.75	101.74	147.09	144.62	100.47	171.1	203.4	79.94
Merged-chrX-155280610-3	chrX	155280093	155281093	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019736, intron 5 of 14)	intron (NM_019736, intron 5 of 14)	18150.0	NM_019736	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	8.58	10.14	0.0	12.14	11.2	10.45	10.56	13.71	6.25
Merged-chr13-92668762-2	chr13	92668254	92669254	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	MLT1A1|LTR|ERVL-MaLR	57616.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	13.16	16.59	12.02	17.54	27.52	24.11	20.07	11.94	16.24
Merged-chr4-149683009-3	chr4	149682501	149683501	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	MTB_Mm|LTR|ERVL-MaLR	-6912.0	NM_001164051	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	10.87	8.75	9.25	9.45	13.06	10.45	11.62	3.98	13.12
Merged-chr1-24695907-2	chr1	24695445	24696445	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	17027.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	10.87	14.28	10.17	20.92	19.13	27.33	17.96	20.34	8.74
Merged-chr4-154915521-2	chr4	154915019	154916019	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	12558.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	10.87	4.61	3.7	9.45	3.27	0.8	27.46	16.8	8.74
Merged-chr12-52001775-2	chr12	52001274	52002274	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347404, intron 2 of 3)	intron (NM_001347404, intron 2 of 3)	4733.0	NM_029545	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	17.73	14.75	18.5	8.1	8.86	12.86	13.73	14.15	11.87
Merged-chr1-182961921-3	chr1	182961410	182962410	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	7122.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	15.45	23.5	0.92	11.47	5.13	3.22	7.39	8.4	1.25
Merged-chr5-149690532-1	chr5	149690032	149691032	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	12275.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	10.3	16.59	30.52	8.77	11.2	35.37	7.39	5.31	13.74
Merged-chr17-10425532-1	chr17	10425032	10426032	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-30684.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	9.15	3.69	3.7	6.75	6.06	6.43	7.39	5.75	2.5
Merged-chr2-94268551-1	chr2	94268051	94269051	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-7152.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	2.29	3.69	7.4	4.05	1.87	2.41	5.28	4.42	6.87
Merged-chr7-4293139-2	chr7	4292660	4293660	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18971.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	30.32	26.26	25.9	26.31	26.12	36.17	117.24	109.66	88.06
Merged-chr18-21718406-1	chr18	21717906	21718906	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-66038.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	4.58	9.68	3.7	8.1	6.53	15.27	1.06	1.33	1.87
Merged-chr2-113399084-1	chr2	113398584	113399584	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285458, intron 2 of 16)	intron (NM_001285458, intron 2 of 16)	-41980.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	45.19	43.31	24.05	62.07	48.52	45.01	22.18	34.05	9.37
Merged-chr11-20068555-1	chr11	20068055	20069055	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146243, intron 8 of 8)	intron (NM_146243, intron 8 of 8)	44396.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	8.58	6.45	18.5	6.07	1.87	8.84	5.28	1.77	5.62
Merged-chr19-45056507-3	chr19	45056021	45057021	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001178013)	TTS (NM_001178013)	8945.0	NM_001362381	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	5.15	4.15	0.0	12.14	3.73	7.23	6.34	1.33	7.49
Merged-chr14-36953312-1	chr14	36952812	36953812	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	Lx9|LINE|L1	-12048.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	9.72	17.97	7.4	14.17	6.06	8.04	9.51	4.42	8.12
Merged-chr3-54317439-2	chr3	54316938	54317938	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253682, intron 10 of 11)	intron (NM_001253682, intron 10 of 11)	-43669.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	7.44	5.99	5.55	16.87	16.79	26.53	20.07	24.32	16.24
Merged-chr5-31526889-3	chr5	31526372	31527372	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009206)	promoter-TSS (NM_009206)	-110.0	NM_028150	72195.0	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	59.49	64.51	64.75	52.63	55.05	61.09	86.61	66.77	43.09
Merged-chr4-141301213-3	chr4	141300690	141301690	+	801.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010139)	promoter-TSS (NM_010139)	-31.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	21.74	14.28	7.4	35.09	19.59	25.72	27.46	6.19	6.87
Merged-chr15-73727579-1	chr15	73727079	73728079	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	2649.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	12.59	19.35	9.25	17.54	7.46	11.25	22.18	10.17	5.62
Merged-chr7-136331597-1	chr7	136331097	136332097	+	801.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040459)	TTS (NR_040459)	17818.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	5.15	5.99	0.0	13.49	8.86	16.08	23.24	16.36	14.36
Merged-chr1-161035986-1	chr1	161035486	161036486	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153814, exon 3 of 10)	non-coding (NR_153814, exon 3 of 10)	1070.0	NR_153812	14455.0	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	89.24	97.69	41.62	78.27	89.57	73.14	90.83	77.82	51.84
Merged-chr5-120498690-1	chr5	120498190	120499190	+	801.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023625, intron 2 of 11)	ID_B1|SINE|B4	4933.0	NM_023625	71772.0	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	5.15	5.53	3.7	10.12	2.8	4.82	2.11	4.86	5.0
Merged-chr4-74305450-2	chr4	74304935	74305935	+	800.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 4 of 20)	MTB_Mm|LTR|ERVL-MaLR	53556.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	14.3	21.66	20.35	15.52	14.93	17.68	23.24	19.46	19.36
Merged-chr11-83665959-2	chr11	83665482	83666482	+	800.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3398.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	50.91	48.38	43.47	14.17	6.06	16.88	15.84	7.96	6.25
Merged-chr12-25415384-3	chr12	25414873	25415873	+	800.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	286199.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.01	5.53	1.85	12.82	6.06	8.04	8.45	3.98	7.49
Merged-chr4-152087936-3	chr4	152087428	152088428	+	800.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104381, intron 2 of 21)	intron (NR_104381, intron 2 of 21)	1065.0	NR_104381	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	5.72	4.61	12.02	6.07	3.73	8.04	1.06	0.88	3.75
Merged-chr12-3696307-3	chr12	3695789	3696789	+	800.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-110691.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	56.63	63.13	42.55	53.3	49.92	53.85	109.84	140.61	48.71
Merged-chr8-115160088-2	chr8	115159597	115160597	+	800.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	546797.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	13.73	8.29	8.32	8.1	9.33	3.22	12.67	6.19	3.12
Merged-chr7-128180255-2	chr7	128179736	128180736	+	800.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029872, intron 5 of 30)	intron (NM_001029872, intron 5 of 30)	6290.0	NM_001029872	381924.0	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	10.87	7.37	1.85	7.42	5.13	6.43	10.56	6.19	2.5
Merged-chr2-157426344-2	chr2	157425841	157426841	+	800.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025395, intron 1 of 13)	intron (NM_001025395, intron 1 of 13)	2048.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	38.9	41.93	40.7	52.63	33.59	41.8	28.52	17.69	16.86
Merged-chr11-26135421-2	chr11	26134925	26135925	+	800.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-66815.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	6.86	7.83	5.55	12.82	16.33	14.47	9.51	4.86	9.99
Merged-chr2-112217794-2	chr2	112217272	112218272	+	800.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-22069.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	9.72	9.22	15.72	7.42	8.86	17.68	12.67	10.61	25.61
Merged-chr11-83969277-2	chr11	83968762	83969762	+	800.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194341, intron 1 of 19)	B3|SINE|B2	4831.0	NM_194341	217030.0	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	19.45	9.22	5.55	11.47	6.53	8.04	13.73	8.4	9.37
Merged-chr17-26438083-3	chr17	26437581	26438581	+	800.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081656, intron 2 of 4)	intron (NM_001081656, intron 2 of 4)	23116.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	33.75	25.34	12.95	43.18	49.92	49.03	72.88	99.93	51.21
Merged-chr1-86416070-2	chr1	86415582	86416582	+	800.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10247.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	57.21	45.16	36.07	24.96	13.06	29.74	25.35	22.11	16.24
Merged-chr9-121605615-3	chr9	121605118	121606118	+	800.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040740, intron 3 of 3)	intron (NR_040740, intron 3 of 3)	18598.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	1.72	4.61	5.55	6.07	3.27	4.02	3.17	0.88	5.0
Merged-chr2-91964998-3	chr2	91964459	91965459	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1396.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	253.99	251.13	172.04	192.29	196.4	142.27	227.08	271.49	119.28
Merged-chr16-10873818-3	chr16	10873305	10874305	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38746.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	6.29	2.3	1.85	3.37	1.4	3.22	2.11	2.21	2.5
Merged-chr2-169934547-3	chr2	169934049	169935049	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	28638.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	13.16	8.29	13.87	14.17	11.2	10.45	13.73	4.86	8.12
Merged-chr15-62165238-3	chr15	62164751	62165751	+	800.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	54200.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	46.34	41.47	51.8	60.72	33.59	41.8	73.93	72.96	18.11
Merged-chr18-34380756-3	chr18	34380251	34381251	+	800.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7336.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	46.34	23.5	18.5	47.9	22.39	37.78	24.29	17.69	18.74
Merged-chr6-42352123-3	chr6	42351674	42352674	+	800.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289618, intron 4 of 9)	intron (NM_001289618, intron 4 of 9)	2346.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	96.11	108.75	104.52	78.27	49.92	59.48	80.27	68.98	74.32
Merged-chr5-102032962-2	chr5	102032453	102033453	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	36968.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	89.24	135.93	95.27	141.69	124.56	176.83	158.43	153.43	106.17
Merged-chr11-49082168-1	chr11	49081668	49082668	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271677, intron 1 of 2)	intron (NM_001271677, intron 1 of 2)	-4849.0	NM_001271676	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	62.93	92.16	79.55	60.72	68.11	35.37	97.17	106.56	57.46
Merged-chr7-35712277-1	chr7	35711777	35712777	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 10 of 18)	intron (NM_178704, intron 10 of 18)	42177.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	22.31	32.25	11.1	10.12	15.86	33.76	4.22	3.54	7.49
Merged-chr4-43741703-1	chr4	43741203	43742203	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10156.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	28.6	26.26	14.8	63.42	51.78	73.14	25.35	23.88	27.48
Merged-chr14-121318486-1	chr14	121317986	121318986	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 2 of 10)	intron (NM_145465, intron 2 of 10)	60744.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.58	1.38	5.55	2.7	4.67	5.63	6.34	4.42	1.87
Merged-chr8-79210198-2	chr8	79209710	79210710	+	800.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026315)	TTS (NM_026315)	38373.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	16.59	8.29	16.65	35.09	26.59	39.39	16.9	13.71	6.25
Merged-chr4-148644061-1	chr4	148643561	148644561	+	800.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085505, intron 1 of 10)	intron (NM_001085505, intron 1 of 10)	744.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	20.59	13.82	8.32	18.89	16.33	25.72	3.17	3.1	2.5
Merged-chr2-152767769-3	chr2	152767266	152768266	+	800.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289739, intron 2 of 4)	L2b|LINE|L2	13593.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	9.72	6.45	3.7	12.82	3.73	1.61	11.62	3.98	1.87
Merged-chr15-6337696-3	chr15	6337187	6338187	+	800.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37898.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	45.19	47.46	25.9	58.03	48.52	34.56	43.3	39.8	29.35
Merged-chr6-53068243-3	chr6	53067762	53068762	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	362.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	3.43	5.53	7.4	9.45	1.87	8.04	7.39	3.98	2.5
Merged-chr4-121016054-3	chr4	121015556	121016556	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	1191.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	73.22	82.94	37.92	78.27	47.58	73.95	106.67	68.98	28.1
Merged-chr14-77928172-3	chr14	77927662	77928662	+	800.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 2 of 11)	intron (NM_029495, intron 2 of 11)	23923.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	15.45	10.14	25.9	11.47	7.46	17.68	22.18	3.54	9.99
Merged-chr12-11215762-1	chr12	11215262	11216262	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6814.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	15.45	21.2	16.65	14.17	16.79	19.29	4.22	2.65	3.75
Merged-chr5-105706841-1	chr5	105706341	105707341	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	6031.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	13.16	10.6	7.4	16.87	10.26	11.25	4.22	5.31	2.5
Merged-chr11-93941085-1	chr11	93940585	93941585	+	800.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134012, intron 15 of 15)	intron (NM_134012, intron 15 of 15)	14698.0	NM_001077529	18103.0	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	20.02	10.14	5.55	20.92	8.86	20.9	13.73	13.71	1.87
Merged-chr11-22515283-2	chr11	22514783	22515783	+	800.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153596, intron 1 of 3)	intron (NM_153596, intron 1 of 3)	3000.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	16.02	18.43	4.62	38.46	25.19	25.72	9.51	13.71	6.25
Merged-chr1-88267913-2	chr1	88267420	88268420	+	800.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 4 of 4)	intron (NM_172505, intron 4 of 4)	1488.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	27.46	30.87	37.0	29.01	23.79	30.54	47.53	35.37	27.48
Merged-chr4-150570487-1	chr4	150569987	150570987	+	800.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	81687.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	162.46	179.25	99.89	155.86	155.81	97.26	191.17	224.62	102.42
Merged-chr10-117437388-3	chr10	117436905	117437905	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10030.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	56.63	79.25	36.07	62.07	71.38	66.71	66.54	107.89	21.86
Merged-chr2-3358113-3	chr2	3357619	3358619	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145921, intron 3 of 7)	intron (NM_145921, intron 3 of 7)	8450.0	NM_145921	99035.0	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	15.45	11.52	11.1	18.89	10.73	21.7	10.56	6.63	9.99
Merged-chr18-60859302-3	chr18	60858792	60859792	+	800.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10328.0	NM_001198984	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	1.72	3.69	1.85	2.02	1.4	3.22	5.28	0.44	5.0
Merged-chr7-24838899-2	chr7	24838412	24839412	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045096, intron 10 of 11)	intron (NR_045096, intron 10 of 11)	20117.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	8.01	6.45	7.4	8.77	15.39	13.66	13.73	10.17	7.49
Merged-chr15-67996682-1	chr15	67996182	67997182	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	262174.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	2.86	3.69	5.55	13.49	6.53	16.88	3.17	4.42	1.87
Merged-chr15-85645362-1	chr15	85644862	85645862	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58411.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	12.59	15.67	16.65	7.42	7.46	1.61	15.84	5.75	4.37
Merged-chr17-36025570-1	chr17	36025070	36026070	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-5010.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	42.33	46.54	47.17	39.13	30.32	39.39	28.52	30.95	25.61
Merged-chr4-16101538-2	chr4	16101041	16102041	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62102.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	16.59	23.96	19.42	36.43	50.38	63.5	33.8	22.55	19.36
Merged-chr9-119445948-3	chr9	119445444	119446444	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153321, intron 3 of 7)	intron (NR_153321, intron 3 of 7)	984.0	NR_153319	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	9.72	14.75	12.95	16.87	9.8	20.09	13.73	16.36	9.99
Merged-chr9-20727920-2	chr9	20727420	20728420	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	309.0	NM_173777	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	8.58	2.3	0.0	6.75	1.87	3.22	6.34	4.42	1.25
Merged-chr7-137416224-1	chr7	137415724	137416724	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-5468.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	1.14	0.46	6.47	2.7	4.67	1.61	1.06	0.44	1.25
Merged-chr11-117955863-1	chr11	117955363	117956363	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13503.0	NM_007707	12702.0	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	8.01	3.23	11.1	8.1	7.93	8.04	8.45	2.21	3.12
Merged-chr8-46791302-1	chr8	46790802	46791802	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	51557.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	73.22	69.12	65.67	57.35	39.19	61.09	67.6	72.96	63.08
Merged-chr7-96153270-1	chr7	96152770	96153770	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17974.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.86	3.69	5.55	4.05	5.13	6.43	5.28	0.88	1.25
Merged-chr19-43496093-3	chr19	43495597	43496597	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_031396, exon 11 of 11)	3' UTR (NM_031396, exon 11 of 11)	28508.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	9.72	2.76	3.7	1.35	3.73	3.22	1.06	3.54	2.5
Merged-chr13-8777869-1	chr13	8777369	8778369	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93175.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.58	0.46	1.85	4.05	4.67	8.04	3.17	3.1	8.74
Merged-chr4-95884956-1	chr4	95884456	95885456	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	82079.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.72	1.38	1.85	6.75	1.87	0.0	3.17	0.0	0.0
Merged-chr2-73453028-4	chr2	73452535	73453535	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	854.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	74.37	82.02	79.55	60.05	54.11	54.66	65.48	82.69	59.33
Merged-chr2-112492596-2	chr2	112492097	112493097	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028844)	promoter-TSS (NM_028844)	-367.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	113.84	86.17	86.95	118.08	97.5	64.3	126.74	72.52	73.07
Merged-chr18-53160376-3	chr18	53159887	53160887	+	800.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15905.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	40.04	24.88	26.82	11.47	11.66	22.51	25.35	19.46	19.98
Merged-chr14-123990082-1	chr14	123989582	123990582	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045479, intron 1 of 3)	intron (NR_045479, intron 1 of 3)	2447.0	NR_045479	69393.0	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	2.86	5.53	5.55	6.75	4.67	6.43	5.28	6.19	6.25
Merged-chr7-49093735-1	chr7	49093235	49094235	+	800.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	68423.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	0.57	2.76	7.4	5.4	1.4	3.22	0.0	1.33	1.25
Merged-chr3-68056651-2	chr3	68056241	68057241	+	800.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177585)	TTS (NM_177585)	-8061.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	8.58	21.2	11.1	11.47	14.0	12.06	7.39	24.32	6.25
Merged-chrX-104280095-3	chrX	104279601	104280601	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009592)	TTS (NM_009592)	-78984.0	NM_001077354	245555.0	Mm.381907	NM_001077354	ENSMUSG00000046449	Nexmif	A230051P11|C77370|C77386|KIDLIA|Xpn|mKIAA2022	neurite extension and migration factor	protein-coding	7.44	7.37	11.1	11.47	7.0	4.82	9.51	7.52	2.5
Merged-chr2-14295564-3	chr2	14295059	14296059	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 15 of 29)	intron (NM_008625, intron 15 of 29)	34556.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	6.29	5.99	3.7	5.4	5.13	16.88	6.34	6.63	6.25
Merged-chr6-113302435-3	chr6	113301944	113302944	+	800.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170673, intron 19 of 19)	intron (NM_170673, intron 19 of 19)	-4693.0	NM_030178	78783.0	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	5.72	3.69	6.47	4.72	2.33	1.61	2.11	4.42	1.25
Merged-chr9-21152920-2	chr9	21152420	21153420	+	800.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	9.72	6.45	3.7	9.45	7.93	6.43	7.39	7.07	6.25
Merged-chr4-142166098-3	chr4	142165683	142166683	+	800.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109684, intron 1 of 6)	intron (NM_001109684, intron 1 of 6)	44025.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	6.29	10.6	24.05	4.05	6.53	11.25	23.24	13.27	2.5
Merged-chr3-40529080-3	chr3	40528584	40529584	+	800.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-6172.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.72	3.69	0.0	8.1	7.93	8.04	8.45	4.42	0.62
Merged-chr16-76539881-2	chr16	76539382	76540382	+	800.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8913.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	6.29	5.53	0.0	3.37	2.8	4.82	8.45	7.07	5.0
Merged-chr5-42967092-2	chr5	42966585	42967585	+	800.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-266378.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	6.29	4.15	5.55	4.72	7.0	8.04	3.17	2.21	0.0
Merged-chr11-115061735-3	chr11	115061240	115062240	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	299.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	158.46	166.34	126.72	22.94	13.53	22.51	50.7	37.58	29.98
Merged-chr2-167693086-3	chr2	167692624	167693624	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	1947.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	56.63	42.39	60.12	64.1	49.45	84.4	52.81	46.43	54.96
Merged-chr15-31460801-3	chr15	31460311	31461311	+	800.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-7122.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	16.02	6.45	5.55	6.07	8.86	10.45	12.67	3.98	3.75
Merged-chr11-51578603-1	chr11	51578103	51579103	+	800.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 27 of 28)	intron (NM_153393, intron 27 of 28)	-6154.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.58	1.84	0.0	2.02	4.67	0.0	5.28	1.77	1.25
Merged-chrX-142904081-1	chrX	142903581	142904581	+	800.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019496, intron 2 of 5)	L2a|LINE|L2	62647.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	4.0	2.3	0.0	1.35	3.27	4.82	7.39	7.07	1.25
Merged-chr13-108300565-1	chr13	108300065	108301065	+	800.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15772.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	1.14	3.69	0.0	4.05	3.27	1.61	3.17	2.21	1.25
Merged-chr16-76380375-3	chr16	76379865	76380865	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-6538.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.29	2.3	0.0	2.7	5.13	1.61	5.28	3.54	6.25
Merged-chr10-122008891-2	chr10	122008377	122009377	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38438.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	8.01	4.61	0.92	12.82	9.33	4.82	7.39	3.98	0.0
Merged-chr2-18688923-3	chr2	18688412	18689412	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-10110.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	5.72	5.07	2.77	8.77	4.2	1.61	10.56	2.65	6.25
Merged-chr11-116016368-4	chr11	116015796	116016796	+	800.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-3577.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	14.87	2.3	3.7	6.07	2.8	1.61	4.22	0.44	1.25
Merged-chrX-36644861-1	chrX	36644361	36645361	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081956, intron 1 of 6)	intron (NM_001081956, intron 1 of 6)	553.0	NM_001081956	338351.0	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	6.86	2.3	3.7	20.24	13.53	16.88	8.45	3.1	3.12
Merged-chr17-65641883-1	chr17	65641383	65642383	+	800.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146002, intron 1 of 2)	intron (NM_001146002, intron 1 of 2)	321.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	10.3	5.53	1.85	3.37	4.67	0.0	7.39	3.54	5.0
Merged-chr2-6580279-3	chr2	6579793	6580793	+	800.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	141369.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.86	8.75	7.4	6.75	12.13	8.04	6.34	6.19	14.99
Merged-chr16-10495166-3	chr16	10494670	10495670	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302619, intron 2 of 19)	RLTR35B_MM|LTR|ERVL	5389.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	17.73	19.81	4.62	9.45	9.33	19.29	16.9	18.13	13.12
Merged-chr6-86364607-3	chr6	86364096	86365096	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1087.0	NM_025591	66488.0	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	21.17	15.67	19.42	14.84	9.33	19.29	19.01	11.94	9.37
Merged-chr1-74245115-3	chr1	74244593	74245593	+	800.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	8576.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	61.78	61.75	39.77	32.39	19.59	40.99	50.7	38.03	36.85
Merged-chr16-18235184-3	chr16	18234665	18235665	+	800.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-29.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	22.88	24.88	12.02	24.29	20.53	39.39	23.24	9.73	16.24
Merged-chr8-46804303-2	chr8	46803789	46804789	+	800.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 2 of 7)	intron (NR_152560, intron 2 of 7)	64544.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	17.16	13.82	14.8	28.34	17.26	16.08	24.29	10.17	27.48
Merged-chr5-135615472-2	chr5	135614965	135615965	+	800.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-17189.0	NM_001357037	215160.0	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	14.3	4.61	3.7	63.42	33.59	51.44	31.69	15.48	9.99
Merged-chr9-104035442-3	chr9	104034946	104035946	+	800.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 19 of 26)	intron (NM_028721, intron 19 of 26)	27675.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	1.14	4.61	1.85	9.45	5.13	1.61	2.11	3.1	2.5
Merged-chr7-29522414-2	chr7	29521914	29522914	+	800.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16954.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	2.29	5.53	5.55	4.72	1.87	3.22	2.11	0.0	1.87
Merged-chr11-37079644-2	chr11	37079156	37080156	+	800.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-135415.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.0	4.61	6.47	5.4	4.67	11.25	6.34	3.1	3.75
Merged-chr15-101298164-3	chr15	101297652	101298652	+	800.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033803)	TTS (NR_033803)	4940.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	17.73	22.58	16.65	20.92	14.46	15.27	15.84	6.63	13.12
Merged-chr14-32093899-3	chr14	32093305	32094305	+	800.011902	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145460, intron 3 of 7)	MIR|SINE|MIR	8077.0	NM_145460	218885.0	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	40.04	45.16	21.27	37.78	44.78	35.37	48.58	38.91	36.85
Merged-chr8-41057424-2	chr8	41056896	41057896	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	-2600.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	4.58	2.3	1.85	2.7	4.2	2.41	4.22	2.65	8.12
Merged-chr2-4548625-1	chr2	4548125	4549125	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-11129.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	8.58	20.27	20.35	13.49	18.66	19.29	15.84	7.96	18.11
Merged-chr13-42282747-1	chr13	42282247	42283247	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18729.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	8.01	6.45	2.77	2.7	1.87	1.61	3.17	2.65	5.0
Merged-chr1-106173116-1	chr1	106172616	106173616	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133821, exon 1 of 17)	exon (NM_133821, exon 1 of 17)	1247.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	37.18	23.5	24.97	49.25	41.99	46.62	36.97	20.34	24.98
Merged-chr16-94618712-2	chr16	94618208	94619208	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	RSINE1|SINE|B4	7289.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	30.32	27.65	21.27	31.71	29.39	32.15	27.46	28.3	18.74
Merged-chr1-92957186-1	chr1	92956686	92957686	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6596.0	NR_015525	100037260.0	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	7.44	6.91	4.62	14.17	8.86	4.02	9.51	3.98	3.75
Merged-chr3-38206120-3	chr3	38205622	38206622	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040541, intron 2 of 2)	intron (NR_040541, intron 2 of 2)	1997.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	5.15	5.07	8.32	6.07	6.53	8.84	14.79	19.01	14.99
Merged-chr14-118236456-1	chr14	118235956	118236956	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_131970, exon 1 of 2)	non-coding (NR_131970, exon 1 of 2)	224.0	NR_131970	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	2.86	3.23	0.0	0.67	1.4	1.61	3.17	0.0	6.25
Merged-chr6-142994414-1	chr6	142993914	142994914	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29962.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	2.86	5.99	0.92	6.75	4.2	4.82	5.28	8.4	5.0
Merged-chr8-116892819-2	chr8	116892319	116893319	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026844, intron 3 of 3)	MTC|LTR|ERVL-MaLR	28617.0	NM_026844	66531.0	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	10.87	5.53	0.0	5.4	6.06	3.22	20.07	20.34	10.62
Merged-chr6-108526860-2	chr6	108526359	108527359	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	MTD|LTR|ERVL-MaLR	37116.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	11.44	4.15	3.7	9.45	3.27	10.45	13.73	6.63	6.25
Merged-chr10-117146794-1	chr10	117146294	117147294	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	B4A|SINE|B4	1680.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	60.64	50.69	24.05	25.64	26.12	32.15	51.75	45.54	37.47
Merged-chr1-138134470-1	chr1	138133970	138134970	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	40656.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	22.88	26.26	22.2	24.29	26.59	13.66	19.01	31.84	23.11
Merged-chr8-105566959-1	chr8	105566459	105567459	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013477)	promoter-TSS (NM_013477)	-895.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	18.31	14.75	7.4	22.27	12.13	28.13	12.67	11.5	10.62
Merged-chr11-22858632-1	chr11	22858132	22859132	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	1103.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	128.71	137.31	158.17	116.05	110.56	77.16	132.02	133.98	89.93
Merged-chr8-83200397-1	chr8	83199897	83200897	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	RMER30|DNA|hAT-Charlie	35045.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	62.93	63.13	89.72	47.23	44.32	40.99	163.71	151.22	50.59
Merged-chr18-65587387-1	chr18	65586887	65587887	+	800.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	4186.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	5.15	5.53	7.4	4.05	3.27	0.0	6.34	5.75	5.0
Merged-chrX-71265269-1	chrX	71264769	71265769	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	50195.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	13.16	16.13	22.2	12.82	5.6	14.47	9.51	11.94	7.49
Merged-chr4-141963353-2	chr4	141962847	141963847	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-19645.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	9.72	1.84	0.0	2.7	2.8	3.22	4.22	0.88	1.25
Merged-chr8-14702402-1	chr8	14701902	14702902	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 5 of 15)	intron (NM_172910, intron 5 of 15)	-186134.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.86	1.84	0.0	1.35	3.73	3.22	0.0	2.21	2.5
Merged-chr15-90132617-1	chr15	90132117	90133117	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-91694.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	4.58	1.84	4.62	2.7	7.0	3.22	4.22	3.1	1.25
Merged-chr1-189873481-1	chr1	189872981	189873981	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008976, exon 19 of 19)	3' UTR (NM_008976, exon 19 of 19)	48810.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.0	1.38	3.7	6.07	1.87	5.63	0.0	2.65	3.75
Merged-chr9-106643357-1	chr9	106642857	106643857	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12752.0	NM_001160353	108068.0	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.0	1.84	3.7	3.37	3.73	0.0	2.11	0.0	1.25
Merged-chr17-5783455-1	chr17	5782955	5783955	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15202.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	33.75	23.5	25.9	31.71	27.99	28.94	27.46	26.97	33.1
Merged-chr4-153827909-2	chr4	153827410	153828410	+	800.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	122566.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	2.29	7.83	5.55	22.27	14.0	16.88	4.22	1.33	3.12
Merged-chr10-78228386-1	chr10	78227886	78228886	+	800.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081055, intron 3 of 22)	intron (NM_001081055, intron 3 of 22)	16256.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	6.29	4.61	0.0	8.1	7.0	8.04	8.45	4.86	1.87
Merged-chr10-111957913-2	chr10	111957419	111958419	+	799.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14776.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	5.72	5.07	0.0	6.07	3.27	0.8	4.22	1.77	0.62
Merged-chr6-127146068-3	chr6	127145556	127146556	+	799.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009829, exon 3 of 5)	exon (NM_009829, exon 3 of 5)	-3333.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	8.01	3.23	7.4	6.75	1.87	2.41	1.06	1.33	4.37
Merged-chr16-50397480-3	chr16	50397002	50398002	+	799.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	34887.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	36.04	39.17	37.0	40.48	26.12	36.17	38.02	38.91	21.86
Merged-chr7-128359330-3	chr7	128358837	128359837	+	799.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44D|LTR|ERVK	58835.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	10.3	13.36	15.72	21.59	11.2	32.96	9.51	5.75	4.37
Merged-chr2-51073258-2	chr2	51072743	51073743	+	799.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75868.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	12.01	7.83	5.55	10.8	4.2	4.82	4.22	4.42	5.62
Merged-chr7-4789065-2	chr7	4788478	4789478	+	799.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029384, intron 1 of 1)	intron (NM_029384, intron 1 of 1)	582.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	24.03	14.28	9.25	33.06	15.39	11.25	16.9	11.05	8.74
Merged-chr14-27344730-3	chr14	27344236	27345236	+	799.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	8699.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	21.74	17.05	20.35	18.89	23.79	30.54	23.24	26.97	26.85
Merged-chr19-34152109-3	chr19	34151607	34152607	+	799.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024204, intron 1 of 5)	intron (NM_024204, intron 1 of 5)	13934.0	NM_024204	52024.0	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	8.01	6.45	1.85	5.4	2.8	6.43	8.45	16.36	8.74
Merged-chr6-92127029-3	chr6	92126501	92127501	+	799.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34568.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	32.61	42.39	27.75	28.34	29.86	24.11	43.3	41.56	25.61
Merged-chr14-99142420-3	chr14	99141938	99142938	+	799.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029320, intron 9 of 17)	intron (NM_029320, intron 9 of 17)	-42668.0	NR_153390	72662.0	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	8.01	4.61	1.85	0.67	1.87	1.61	0.0	2.21	6.25
Merged-chr2-128395503-3	chr2	128394965	128395965	+	799.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	33886.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	78.37	63.59	24.05	82.32	69.51	60.28	80.27	90.64	54.33
Merged-chr18-77743734-3	chr18	77743244	77744244	+	799.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-10274.0	NR_155289	105246501.0	Mm.403904	NR_155289		A330094K24Rik	-	RIKEN cDNA A330094K24 gene	ncRNA	5.15	3.69	5.55	8.77	3.27	1.61	8.45	5.75	1.25
Merged-chr17-28707431-3	chr17	28706943	28707943	+	799.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	14875.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	74.37	88.93	49.02	76.24	62.05	52.25	67.6	85.34	31.85
Merged-chr19-36919712-3	chr19	36919209	36920209	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028263)	promoter-TSS (NM_028263)	-110.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	22.31	11.98	12.02	22.94	21.93	15.27	69.71	30.95	12.49
Merged-chr18-79590645-3	chr18	79590146	79591146	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-456249.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	8.58	3.69	2.77	2.02	4.2	4.82	2.11	0.88	3.12
Merged-chr13-52080022-1	chr13	52079522	52080522	+	799.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16719.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	20.59	14.28	11.1	22.94	17.73	16.88	11.62	11.5	13.12
Merged-chr7-75655885-3	chr7	75655391	75656391	+	799.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	L1M4|LINE|L1	-192447.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	243.69	388.44	157.24	255.04	276.64	174.42	184.83	210.91	108.04
Merged-chr1-135516490-3	chr1	135516047	135517047	+	799.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-61864.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	146.45	122.11	131.34	99.86	83.51	99.67	87.66	83.57	56.21
Merged-chr19-47795555-2	chr19	47795050	47796050	+	799.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027559, intron 11 of 37)	intron (NM_027559, intron 11 of 37)	-40393.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	1.72	3.69	4.62	3.37	2.33	4.02	2.11	4.86	8.12
Merged-chr9-105198885-2	chr9	105198389	105199389	+	799.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 15 of 15)	intron (NM_172461, intron 15 of 15)	-53807.0	NM_028562	73532.0	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	6.29	5.53	20.35	6.75	5.6	7.23	3.17	2.65	3.75
Merged-chr9-66124194-3	chr9	66123708	66124708	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	678.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	75.51	74.65	105.44	82.99	101.7	105.3	100.34	141.49	71.82
Merged-chr12-103325667-3	chr12	103325165	103326165	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 7 of 9)	CpG	10706.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	4.58	3.23	3.7	4.72	4.67	1.61	4.22	2.21	4.37
Merged-chr17-65870312-3	chr17	65869817	65870817	+	799.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009067, intron 1 of 9)	B3A|SINE|B2	14606.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	4.0	4.15	1.85	7.42	4.67	1.61	0.0	3.98	2.5
Merged-chr6-116010716-2	chr6	116010214	116011214	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15709.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	5.15	3.23	5.55	7.42	4.2	3.22	7.39	1.33	6.25
Merged-chr15-81077757-2	chr15	81077274	81078274	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	B3A|SINE|B2	27273.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.01	14.75	7.4	9.45	7.0	12.86	9.51	11.05	1.87
Merged-chr6-87849895-2	chr6	87849414	87850414	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355195, intron 1 of 4)	intron (NM_001355195, intron 1 of 4)	1192.0	NM_001109745	12785.0	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	134.43	143.76	79.55	122.8	128.29	122.18	133.08	141.49	73.07
Merged-chr11-83603614-1	chr11	83603114	83604114	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	MLT1G|LTR|ERVL-MaLR	-10527.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	16.59	12.44	19.42	45.21	29.39	34.56	29.57	13.27	13.12
Merged-chr6-143132063-2	chr6	143131562	143132562	+	799.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 7 of 8)	L2|LINE|L2	21869.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	7.44	9.68	6.47	12.82	6.53	8.04	12.67	8.84	2.5
Merged-chr9-70307217-1	chr9	70306717	70307717	+	799.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181072, intron 4 of 27)	intron (NM_181072, intron 4 of 27)	98536.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	5.15	5.99	3.7	6.75	2.8	15.27	23.24	16.8	6.87
Merged-chr17-65907116-3	chr17	65906636	65907636	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21381.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	9.72	10.14	15.72	11.47	19.13	22.51	13.73	15.48	14.36
Merged-chr8-79501421-3	chr8	79500914	79501914	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101946.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	13.16	17.05	3.7	23.62	15.39	26.53	20.07	14.15	8.74
Merged-chr11-31868941-3	chr11	31868442	31869442	+	799.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1998.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	24.03	19.81	16.65	12.14	5.13	3.22	32.74	19.01	13.12
Merged-chr14-74868774-2	chr14	74868273	74869273	+	799.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	79104.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	22.88	9.68	7.4	21.59	6.53	6.43	9.51	7.96	8.12
Merged-chr14-31394992-2	chr14	31394479	31395479	+	799.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	22698.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	44.05	44.7	61.97	97.16	42.45	89.22	66.54	48.2	59.95
Merged-chrX-71439636-1	chrX	71439136	71440136	+	799.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199349, intron 5 of 9)	intron (NM_001199349, intron 5 of 9)	53213.0	NM_138309	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	1.72	2.76	3.7	4.72	0.93	4.82	0.0	0.0	3.12
Merged-chr1-74376168-3	chr1	74375661	74376661	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 2 of 14)	intron (NM_013612, intron 2 of 14)	958.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	314.06	393.51	311.71	355.58	379.74	328.75	370.72	436.86	216.09
Merged-chr8-88272563-3	chr8	88272075	88273075	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007406, exon 1 of 28)	5' UTR (NM_007406, exon 1 of 28)	172.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	8.58	0.46	0.0	10.12	5.13	0.0	9.51	3.54	3.75
Merged-chr12-80257757-1	chr12	80257257	80258257	+	799.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	2614.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	14.87	7.83	20.35	17.54	14.0	6.43	23.24	19.01	14.36
Merged-chr16-33416480-3	chr16	33415992	33416992	+	799.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	RLTR40|LTR|ERVK	16047.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	55.49	44.24	31.45	69.5	34.06	43.4	86.61	79.59	18.74
Merged-chr7-45123304-2	chr7	45122808	45123808	+	799.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_000004)	promoter-TSS (NR_000004)	-197.0	NR_000004	27212.0		NR_000004	ENSMUSG00000064767	Snord35b	Rnu35b|U35	small nucleolar RNA, C/D box 35B	snoRNA	28.6	36.86	28.67	32.39	19.13	32.96	38.02	33.16	24.98
Merged-chr8-94667141-2	chr8	94666636	94667636	+	799.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024269)	promoter-TSS (NM_024269)	45.0	NM_024269	107566.0	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	15.45	12.9	17.57	51.95	34.99	11.25	27.46	19.9	5.62
Merged-chr3-28107761-2	chr3	28107224	28108224	+	799.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	123553.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	18.88	18.89	16.65	15.52	13.53	14.47	22.18	19.9	23.11
Merged-chr14-33205619-3	chr14	33205091	33206091	+	799.6348879999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11232.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	22.31	18.89	18.5	25.64	13.06	26.53	23.24	16.8	17.49
Merged-chr15-74970569-3	chr15	74970051	74971051	+	799.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12879.0	NM_001358005	57248.0	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	22.31	29.03	63.82	17.54	16.33	30.54	51.75	34.93	33.1
Merged-chr9-50965524-2	chr9	50965037	50966037	+	799.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	43536.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	32.61	17.97	37.0	18.22	19.13	36.17	39.08	25.65	23.73
Merged-chr1-92666321-2	chr1	92665810	92666810	+	799.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-17469.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	69.79	53.45	32.37	72.19	49.92	61.09	51.75	42.45	23.73
Merged-chr14-54781171-3	chr14	54780692	54781692	+	799.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016972, exon 1 of 11)	exon (NM_016972, exon 1 of 11)	694.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	54.92	63.13	62.9	65.45	74.17	92.44	90.83	133.98	94.3
Merged-chr2-28513204-3	chr2	28512682	28513682	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145834)	promoter-TSS (NM_001145834)	15.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	9.72	1.38	3.7	9.45	3.73	7.23	3.17	5.31	4.37
Merged-chr4-136142251-3	chr4	136141746	136142746	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1576.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	209.37	241.91	152.62	236.83	222.52	178.44	236.59	291.39	175.49
Merged-chr3-121307749-3	chr3	121307224	121308224	+	799.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024178, intron 2 of 3)	intron (NM_024178, intron 2 of 3)	15984.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	2.29	3.23	3.7	8.1	1.87	0.0	4.22	1.77	3.75
Merged-chr6-124854917-2	chr6	124854402	124855402	+	799.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013534, exon 4 of 15)	exon (NM_013534, exon 4 of 15)	2785.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	5.72	3.69	9.25	4.72	9.8	4.82	3.17	7.52	2.5
Merged-chr6-87189950-3	chr6	87189441	87190441	+	799.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054041, intron 14 of 17)	intron (NM_054041, intron 14 of 17)	85195.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	10.87	6.91	12.95	9.45	3.27	9.65	11.62	3.1	9.99
Merged-chr12-38864869-2	chr12	38864377	38865377	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	intron (NM_001347379, intron 11 of 11)	81166.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	28.03	22.58	13.87	31.71	14.93	28.13	36.97	14.59	32.48
Merged-chr14-117710777-1	chr14	117710277	117711277	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	243070.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	5.15	2.3	0.0	6.75	3.73	3.22	8.45	9.29	5.0
Merged-chr4-63561009-1	chr4	63560509	63561509	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144905, intron 2 of 9)	intron (NM_144905, intron 2 of 9)	782.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	72.65	89.85	107.29	95.81	81.17	129.41	175.33	150.34	83.06
Merged-chr2-172441369-2	chr2	172440874	172441874	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025542, intron 1 of 8)	intron (NM_025542, intron 1 of 8)	796.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	76.08	108.75	58.27	154.51	171.68	116.55	89.78	85.34	54.96
Merged-chr8-83310074-1	chr8	83309574	83310574	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19726.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	2.29	0.92	3.7	8.1	3.73	4.82	5.28	2.65	6.25
Merged-chr11-74993259-2	chr11	74992761	74993761	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	67389.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	80.66	70.5	43.47	63.42	35.45	51.44	57.03	100.81	54.33
Merged-chr3-95283399-2	chr3	95282931	95283931	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199475, exon 1 of 10)	5' UTR (NM_199475, exon 1 of 10)	496.0	NM_199475	75007.0	Mm.279287	NM_133858	ENSMUSG00000038712	Mindy1	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|Fam63a|cI-40|mKIAA1390|ni	MINDY lysine 48 deubiquitinase 1	protein-coding	73.22	72.34	61.97	128.87	122.69	123.78	89.78	80.03	63.08
Merged-chr17-25914118-2	chr17	25913617	25914617	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	5597.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	24.03	22.12	7.4	37.11	34.06	25.72	38.02	35.82	19.98
Merged-chr8-69953433-1	chr8	69952933	69953933	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	20950.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	10.3	10.14	11.1	21.59	11.66	8.04	7.39	7.07	7.49
Merged-chr3-127640025-2	chr3	127639532	127640532	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6896.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	4.58	4.61	1.85	6.75	2.8	6.43	3.17	1.33	0.0
Merged-chr5-140737418-2	chr5	140736930	140737930	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	13303.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	45.76	47.46	47.17	58.03	44.32	53.05	32.74	25.65	8.12
Merged-chr15-81417092-3	chr15	81416535	81417535	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177310, intron 2 of 8)	ERVB7_2B-LTR_MM|LTR|ERVK	-8762.0	NM_021317	57755.0	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	8.01	10.14	12.95	24.29	16.79	13.66	22.18	15.92	5.0
Merged-chr2-164794494-3	chr2	164794000	164795000	+	799.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133240, intron 5 of 5)	intron (NM_133240, intron 5 of 5)	8479.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	5.15	6.91	7.4	3.37	6.06	12.86	12.67	11.5	4.37
Merged-chr12-99639330-1	chr12	99638830	99639830	+	799.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-11356.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	2.86	4.15	0.0	8.1	1.87	0.0	20.07	10.61	5.0
Merged-chr2-25305160-1	chr2	25304660	25305660	+	799.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008169, exon 6 of 20)	exon (NM_008169, exon 6 of 20)	13940.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	2.86	0.92	0.0	1.35	0.47	0.0	2.11	2.21	2.5
Merged-chr5-113899360-3	chr5	113898867	113899867	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011779, intron 1 of 10)	intron (NM_011779, intron 1 of 10)	9339.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	22.31	12.44	24.97	25.64	20.99	20.9	27.46	14.59	13.12
Merged-chr10-52426098-3	chr10	52425595	52426595	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	MTD|LTR|ERVL-MaLR	8548.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	40.04	36.4	31.45	31.04	44.32	43.4	35.91	65.44	34.97
Merged-chr9-48548435-3	chr9	48547953	48548953	+	799.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC2|LINE|L1	53110.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	29.75	35.94	42.55	31.71	43.85	51.44	44.36	62.35	27.48
Merged-chr9-89227938-2	chr9	89227435	89228435	+	799.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	URR1B|DNA|hAT-Charlie	16551.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	36.61	47.0	44.4	51.28	41.99	36.97	60.2	44.22	20.61
Merged-chr13-111929442-2	chr13	111928913	111929913	+	799.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61477.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	89.24	69.12	37.92	39.13	35.92	21.7	13.73	16.36	7.49
Merged-chr13-30625336-2	chr13	30624821	30625821	+	799.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10278.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	34.32	40.55	19.42	35.76	27.99	36.17	41.19	49.96	44.97
Merged-chr14-21613251-1	chr14	21612751	21613751	+	799.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 3 of 16)	intron (NM_017479, intron 3 of 16)	101325.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	1.14	5.99	11.1	14.84	6.06	6.43	3.17	2.21	5.0
Merged-chr11-46311840-3	chr11	46311353	46312353	+	799.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 1 of 30)	CpG	505.0	NM_001252460	76884.0	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	2.86	3.23	14.8	10.8	3.27	6.43	5.28	4.86	6.25
Merged-chr4-138922181-3	chr4	138921640	138922640	+	799.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8193.0	NM_028453	73162.0	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	3.43	0.46	0.0	0.67	1.87	0.0	7.39	1.77	3.12
Merged-chr6-90736812-3	chr6	90736308	90737308	+	799.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	CpG	-20279.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	17.73	5.53	0.0	14.84	6.53	3.22	16.9	3.54	11.24
Merged-chr3-41363524-2	chr3	41363029	41364029	+	799.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129670.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.29	7.83	5.55	10.8	7.46	1.61	3.17	0.44	0.0
Merged-chr1-64080383-2	chr1	64079867	64080867	+	799.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	-37866.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	12.59	18.43	12.02	16.87	32.19	46.62	23.24	12.38	19.36
Merged-chr7-145029808-2	chr7	145029323	145030323	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89898.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	5.72	9.68	5.55	16.87	7.0	20.9	4.22	11.94	3.12
Merged-chr3-41366986-2	chr3	41366480	41367480	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126219.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	7.44	6.45	3.7	8.77	3.73	8.84	2.11	0.0	14.36
Merged-chr7-43668804-2	chr7	43668314	43669314	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-3217.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	137.29	123.03	103.59	128.87	90.5	83.59	198.56	190.57	123.03
Merged-chr5-117884568-2	chr5	117884062	117885062	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 2 of 27)	ORR1E|LTR|ERVL-MaLR	17723.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	28.03	28.11	38.85	56.0	28.92	66.71	47.53	29.18	29.35
Merged-chr17-35051386-2	chr17	35050880	35051880	+	799.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033444, intron 1 of 5)	intron (NM_033444, intron 1 of 5)	1137.0	NM_033444	114584.0	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	141.3	129.48	163.72	112.68	90.97	164.78	177.44	181.29	144.89
Merged-chr19-42177126-2	chr19	42176638	42177638	+	799.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164531, intron 2 of 11)	intron (NM_001164531, intron 2 of 11)	6571.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	11.44	7.83	11.1	8.1	4.67	8.04	4.22	3.54	4.37
Merged-chr10-37197073-1	chr10	37196573	37197573	+	799.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-58147.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	19.45	25.34	9.25	16.19	18.19	20.9	16.9	12.38	7.49
Merged-chr13-98768484-1	chr13	98767984	98768984	+	799.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172591, intron 8 of 25)	intron (NM_172591, intron 8 of 25)	46965.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	20.59	19.35	22.2	29.69	18.66	17.68	43.3	40.68	21.23
Merged-chr8-117285248-3	chr8	117284748	117285748	+	799.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	28229.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	23.45	22.58	12.02	20.92	21.46	16.88	25.35	12.82	13.74
Merged-chr10-127381173-3	chr10	127380677	127381677	+	799.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359244, intron 1 of 25)	intron (NM_001359244, intron 1 of 25)	509.0	NM_001359244	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	133.29	80.64	74.0	132.24	67.64	58.68	154.2	70.3	55.58
Merged-chr19-41324011-3	chr19	41323514	41324514	+	799.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 7 of 16)	MIR|SINE|MIR	-60010.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	35.47	40.55	54.57	45.21	31.26	44.21	45.42	41.56	63.7
Merged-chr1-151932372-3	chr1	151931863	151932863	+	799.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	157957.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	37.76	22.12	13.87	27.66	22.39	20.9	7.39	8.4	8.74
Merged-chr6-124859962-3	chr6	124859442	124860442	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013533, intron 3 of 4)	intron (NM_013533, intron 3 of 4)	-2255.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	10.3	1.84	6.47	10.12	1.87	3.22	1.06	3.54	0.62
Merged-chr3-10307000-3	chr3	10306490	10307490	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5807.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	9.72	3.69	0.0	2.02	1.4	4.82	1.06	7.07	3.75
Merged-chr15-31466520-3	chr15	31466043	31467043	+	799.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12854.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	29.75	46.08	16.65	35.09	43.85	33.76	41.19	49.08	33.72
Merged-chr6-4997763-1	chr6	4997263	4998263	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	94443.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	4.58	6.45	15.72	9.45	12.13	9.65	2.11	3.1	6.25
Merged-chr18-77663934-2	chr18	77663417	77664417	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178670, intron 2 of 4)	Tigger7|DNA|TcMar-Tigger	50093.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	3.43	8.29	3.7	4.72	2.8	8.84	6.34	7.52	11.24
Merged-chr7-80788524-2	chr7	80788020	80789020	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	MIRb|SINE|MIR	14811.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	41.19	58.06	28.67	62.07	25.19	50.64	43.3	46.87	21.23
Merged-chr10-56840919-2	chr10	56840416	56841416	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	408935.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	4.0	7.83	3.7	4.72	5.13	14.47	13.73	5.31	6.87
Merged-chr4-120934071-2	chr4	120933587	120934587	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 5 of 5)	intron (NM_001005788, intron 5 of 5)	-9082.0	NM_001160043	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	17.73	18.89	33.3	25.64	14.93	33.76	11.62	3.98	11.24
Merged-chr2-31077008-2	chr2	31076516	31077516	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 6 of 15)	MTD|LTR|ERVL-MaLR	19484.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	100.68	94.46	68.45	142.37	90.04	90.83	66.54	76.94	68.7
Merged-chr2-168574043-2	chr2	168573550	168574550	+	799.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	16315.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	9.72	8.75	2.77	10.8	4.67	8.04	5.28	3.54	3.75
Merged-chr3-65391790-1	chr3	65391290	65392290	+	799.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026155, intron 1 of 4)	intron (NM_026155, intron 1 of 4)	763.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	109.83	148.83	90.65	141.02	125.49	109.32	138.36	138.4	73.07
Merged-chr9-20889385-3	chr9	20888891	20889891	+	799.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145610, exon 3 of 11)	exon (NM_145610, exon 3 of 11)	1216.0	NM_145610	235036.0	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog	protein-coding	32.61	31.79	49.95	23.62	18.19	23.31	53.87	37.58	26.85
Merged-chr4-151068902-2	chr4	151068387	151069387	+	799.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 23 of 23)	intron (NM_001081557, intron 23 of 23)	-10934.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	2.29	3.23	0.0	3.37	4.2	3.22	1.06	3.1	3.75
Merged-chr16-95705577-6	chr16	95705112	95706112	+	799.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011809, intron 1 of 9)	MER33|DNA|hAT-Charlie	3205.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	20.02	19.35	9.25	18.22	9.33	13.66	17.96	9.29	10.62
Merged-chr9-13466568-3	chr9	13466072	13467072	+	799.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35211.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	62.93	94.0	82.32	72.19	67.64	78.77	61.26	76.94	51.21
Merged-chr15-6733244-3	chr15	6732780	6733780	+	799.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030168, intron 2 of 37)	intron (NM_030168, intron 2 of 37)	24899.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	16.59	24.42	37.0	29.01	22.39	30.54	29.57	23.43	19.36
Merged-chr5-34518115-3	chr5	34517623	34518623	+	799.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4144.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	6.86	6.91	9.25	6.07	3.73	7.23	10.56	3.98	8.12
Merged-chr7-84171508-2	chr7	84171009	84172009	+	799.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19616.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.15	1.84	1.85	0.67	2.8	5.63	9.51	2.21	1.87
Merged-chr4-122835845-2	chr4	122835350	122836350	+	799.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008917)	promoter-TSS (NM_008917)	-377.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	43.48	45.16	55.5	58.03	55.98	61.89	92.94	65.88	40.59
Merged-chr14-118506803-2	chr14	118506301	118507301	+	799.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 26 of 29)	intron (NM_001163676, intron 26 of 29)	85671.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	8.58	9.22	5.55	23.62	11.66	8.84	3.17	4.86	3.75
Merged-chr9-47588519-2	chr9	47588024	47589024	+	799.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	MTEa|LTR|ERVL-MaLR	58172.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	96.11	89.39	78.62	126.85	97.97	91.63	9.51	4.86	1.25
Merged-chr1-155224349-3	chr1	155223840	155224840	+	799.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65637.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	10.3	2.3	1.85	9.45	3.73	4.82	7.39	5.31	2.5
Merged-chr3-89421578-2	chr3	89421077	89422077	+	799.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113331)	promoter-TSS (NM_001113331)	-44.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	2.29	4.61	2.77	5.4	4.2	18.49	8.45	2.65	6.25
Merged-chr5-117134157-3	chr5	117133734	117134734	+	799.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	646.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	137.86	188.92	150.77	138.99	179.61	145.49	185.89	184.83	81.19
Merged-chr12-111907732-3	chr12	111907197	111908197	+	799.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	C-rich|Low_complexity|Low_complexity	358.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	42.9	28.57	29.6	53.98	27.52	39.39	78.16	15.03	24.36
Merged-chr10-75229219-2	chr10	75228735	75229735	+	799.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145826, intron 3 of 18)	URR1A|DNA|hAT-Charlie	16845.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	20.02	22.58	12.95	22.27	17.26	16.08	28.52	21.67	23.11
Merged-chr7-96629425-2	chr7	96628932	96629932	+	799.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	172117.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	5.15	5.99	12.02	4.05	4.2	4.82	0.0	1.77	3.75
Merged-chr7-119920662-2	chr7	119920168	119921168	+	799.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20557.0	NR_126475	73919.0	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	34.9	27.65	22.2	35.09	26.59	16.08	49.64	47.31	14.99
Merged-chr8-71637602-3	chr8	71636998	71637998	+	799.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 35 of 41)	intron (NM_001029873, intron 35 of 41)	-6392.0	NR_106035	102466799.0		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	15.45	12.44	10.17	26.99	9.8	15.27	11.62	17.69	10.62
Merged-chr14-70206611-1	chr14	70206111	70207111	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	-589.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	17.16	11.98	7.4	49.93	55.51	32.15	7.39	3.98	6.25
Merged-chr10-16960604-2	chr10	16960111	16961111	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 5 of 8)	L1MCa|LINE|L1	135171.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.72	3.69	3.7	6.07	5.6	6.43	1.06	5.75	6.87
Merged-chr17-72943605-1	chr17	72943105	72944105	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25300.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	27.46	30.41	22.2	19.57	25.66	26.53	38.02	34.93	17.49
Merged-chr1-53782540-3	chr1	53782003	53783003	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	2712.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	118.99	167.73	67.52	99.86	89.57	69.93	92.94	107.45	98.05
Merged-chr16-38442391-1	chr16	38441891	38442891	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9246.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	14.87	8.29	16.65	16.87	9.33	4.82	11.62	10.61	9.99
Merged-chr7-49399524-2	chr7	49399025	49400025	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 4 of 37)	intron (NM_175272, intron 4 of 37)	153336.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.29	4.61	1.85	4.72	0.47	6.43	3.17	0.88	1.25
Merged-chr10-127340087-1	chr10	127339587	127340587	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010296, intron 2 of 12)	intron (NM_010296, intron 2 of 12)	1492.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	6.29	2.76	1.85	6.07	1.4	9.65	2.11	0.44	3.12
Merged-chr17-35825046-1	chr17	35824546	35825546	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008027, intron 6 of 12)	B1F|SINE|Alu	1689.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	6.86	4.61	4.62	4.05	2.33	12.06	3.17	7.96	10.62
Merged-chr9-108626615-1	chr9	108626115	108627115	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151664, intron 3 of 15)	intron (NR_151664, intron 3 of 15)	22793.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	4.58	6.45	3.7	10.12	8.4	9.65	5.28	3.1	2.5
Merged-chr1-121441236-1	chr1	121440736	121441736	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029955, intron 3 of 23)	intron (NM_029955, intron 3 of 23)	10169.0	NM_029955	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	46.91	43.77	67.52	24.29	26.12	54.66	23.24	11.5	36.22
Merged-chr19-47905763-1	chr19	47905263	47906263	+	799.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	13536.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	5.72	2.3	3.7	2.02	1.87	1.61	3.17	1.77	5.0
Merged-chr10-40138209-2	chr10	40137740	40138740	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	4014.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	48.62	62.67	74.0	62.75	56.91	52.25	77.1	62.79	38.72
Merged-chr5-34243583-1	chr5	34243083	34244083	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 1 of 12)	intron (NM_001015039, intron 1 of 12)	44741.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	10.87	11.98	4.62	17.54	20.53	14.47	3.17	3.54	6.25
Merged-chr5-16554563-1	chr5	16554063	16555063	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289458, intron 2 of 18)	(TGGGGG)n|Simple_repeat|Simple_repeat	662.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	26.31	33.18	22.2	15.52	16.33	26.53	29.57	22.99	21.23
Merged-chr15-88035634-1	chr15	88035134	88036134	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-239691.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	6.29	5.07	5.55	6.75	4.67	16.88	0.0	0.0	1.25
Merged-chr5-76179425-3	chr5	76178926	76179926	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4454.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	21.74	17.97	11.1	10.8	10.26	15.27	9.51	3.54	6.25
Merged-chr19-45388631-1	chr19	45388131	45389131	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009771, intron 1 of 13)	intron (NM_009771, intron 1 of 13)	24897.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	12.01	4.61	3.7	7.42	6.06	1.61	3.17	2.65	6.25
Merged-chr8-41053472-2	chr8	41052947	41053947	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 3 of 13)	intron (NM_001005863, intron 3 of 13)	1349.0	NM_001005864	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	5.72	1.84	5.55	10.8	7.93	8.04	4.22	2.65	7.49
Merged-chr10-75227250-1	chr10	75226750	75227750	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 2 of 18)	MIR|SINE|MIR	14860.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	21.74	23.04	23.12	21.59	19.13	27.33	41.19	31.39	20.61
Merged-chr4-63159115-1	chr4	63158615	63159615	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4943.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	1.14	0.92	1.85	3.37	3.73	1.61	1.06	0.0	1.87
Merged-chr1-151653611-2	chr1	151653122	151654122	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	82249.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	11.44	13.82	19.42	20.92	9.8	17.68	17.96	14.15	9.37
Merged-chr11-83191240-3	chr11	83190745	83191745	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011409)	promoter-TSS (NM_011409)	-85.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	58.35	56.22	34.22	50.6	51.32	40.99	81.33	70.75	26.85
Merged-chr18-56427898-1	chr18	56427398	56428398	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	-4234.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	10.3	17.05	10.17	12.82	10.26	9.65	5.28	11.05	6.25
Merged-chr8-20013492-1	chr8	20012992	20013992	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270553, intron 6 of 9)	intron (NM_001270553, intron 6 of 9)	283916.0	NM_001039553	626415.0	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	1.14	4.15	5.55	3.37	3.27	1.61	1.06	1.33	1.25
Merged-chr7-28762016-1	chr7	28761516	28762516	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001306222, intron 2 of 5)	intron (NM_001306222, intron 2 of 5)	4628.0	NM_001306222	18036.0	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	7.44	1.38	7.4	2.7	2.33	6.43	1.06	0.88	2.5
Merged-chr2-18892925-1	chr2	18892425	18893425	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-91107.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	39.47	41.01	36.07	32.39	22.86	14.47	23.24	19.46	16.24
Merged-chr4-32170294-1	chr4	32169794	32170794	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206187.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	7.44	4.15	1.85	6.07	8.4	11.25	10.56	14.15	26.85
Merged-chrX-47928224-1	chrX	47927724	47928724	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177215, intron 4 of 23)	intron (NM_177215, intron 4 of 23)	15768.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	1.72	3.23	0.0	9.45	2.33	1.61	5.28	1.33	3.12
Merged-chr16-32644338-1	chr16	32643838	32644838	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-305.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	6.29	3.23	1.85	3.37	0.93	8.04	6.34	2.65	2.5
Merged-chr13-9634980-1	chr13	9634480	9635480	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 30 of 36)	intron (NM_001081426, intron 30 of 36)	128830.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	12.01	13.82	19.42	12.14	13.06	20.9	7.39	15.48	11.87
Merged-chr13-60016347-1	chr13	60015847	60016847	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13364.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	1.14	2.3	0.0	12.14	8.4	4.02	2.11	4.86	2.5
Merged-chr2-6336125-1	chr2	6335625	6336625	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080548, intron 1 of 14)	intron (NM_001080548, intron 1 of 14)	13368.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	38.9	41.47	27.75	59.38	61.11	37.78	73.93	49.96	17.49
Merged-chr13-24713721-2	chr13	24713201	24714201	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029679, exon 17 of 23)	exon (NM_029679, exon 17 of 23)	48236.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	5.15	1.84	0.0	5.4	3.73	8.04	4.22	2.21	3.75
Merged-chr3-100430490-2	chr3	100429968	100430968	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040543, intron 2 of 2)	intron (NR_040543, intron 2 of 2)	4063.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	14.3	11.98	16.65	18.22	9.33	13.66	8.45	13.71	10.62
Merged-chr2-113478633-2	chr2	113478131	113479131	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	37567.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	10.3	8.29	10.17	14.84	10.73	11.25	9.51	10.61	5.0
Merged-chr19-32594109-2	chr19	32593611	32594611	+	799.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1604.0	NM_001201470	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	4.0	4.61	1.85	2.02	2.8	1.61	6.34	7.07	1.25
Merged-chr1-64907901-1	chr1	64907401	64908401	+	799.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	48923.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	18.88	10.6	12.95	13.49	22.39	4.82	6.34	6.19	3.75
Merged-chr12-4232966-3	chr12	4232457	4233457	+	798.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134046, intron 2 of 6)	intron (NM_134046, intron 2 of 6)	1008.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	31.46	68.66	47.17	35.09	55.05	49.83	52.81	65.44	41.22
Merged-chr1-173877361-2	chr1	173876861	173877861	+	798.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	2826.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	36.04	39.63	14.8	43.18	32.19	23.31	17.96	22.99	13.12
Merged-chr19-53895009-2	chr19	53894514	53895514	+	798.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	2783.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	6.86	9.22	11.1	14.17	8.86	4.82	8.45	7.52	14.36
Merged-chr9-56075449-3	chr9	56074943	56075943	+	798.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14533.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	17.16	16.59	6.47	19.57	18.66	14.47	19.01	17.69	18.74
Merged-chr8-13874971-2	chr8	13874476	13875476	+	798.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181854, intron 1 of 1)	PB1|SINE|Alu	5335.0	NM_181854	101994.0	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	18.31	16.13	10.17	19.57	9.33	18.49	20.07	17.69	14.36
Merged-chr12-73621914-2	chr12	73621402	73622402	+	798.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	37106.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	13.73	10.14	14.8	11.47	16.79	36.17	5.28	12.82	17.49
Merged-chr8-117480673-3	chr8	117480155	117481155	+	798.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17620.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	12.01	13.82	20.35	6.75	6.06	11.25	10.56	16.8	13.12
Merged-chr14-54463272-3	chr14	54462758	54463758	+	798.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022993)	promoter-TSS (NM_022993)	-889.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	48.05	47.0	46.25	29.69	47.58	40.19	45.42	53.94	31.85
Merged-chr9-58804343-2	chr9	58803825	58804825	+	798.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-19187.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	30.89	29.49	29.6	19.57	22.86	47.42	30.63	25.65	26.23
Merged-chr5-113122523-2	chr5	113122022	113123022	+	798.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	MIR|SINE|MIR	16063.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	10.87	6.91	5.55	2.7	1.4	4.82	0.0	0.88	1.87
Merged-chr2-29649917-2	chr2	29649429	29650429	+	798.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	30209.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	81.23	68.66	53.65	80.29	70.44	33.76	69.71	69.42	51.21
Merged-chr7-90069993-3	chr7	90069497	90070497	+	798.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40838.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	12.59	17.97	11.1	12.14	11.2	21.7	19.01	23.88	24.36
Merged-chr11-95827224-3	chr11	95826748	95827748	+	798.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153104, intron 1 of 2)	intron (NM_153104, intron 1 of 2)	2748.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	64.64	67.74	50.87	52.63	35.92	48.23	49.64	54.83	21.86
Merged-chr9-50522802-3	chr9	50522321	50523321	+	798.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011220, intron 4 of 5)	intron (NM_011220, intron 4 of 5)	5820.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	7.44	13.36	9.25	10.8	8.4	16.08	15.84	10.61	11.24
Merged-chr13-101678754-2	chr13	101678223	101679223	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13907.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.86	4.61	11.1	4.72	1.4	3.22	6.34	5.31	2.5
Merged-chr8-67506565-2	chr8	67506072	67507072	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER3D-int|LTR|ERVK	11624.0	NM_010874	17961.0	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	2.86	3.23	0.0	7.42	4.67	5.63	5.28	8.4	3.75
Merged-chr7-129301688-2	chr7	129301185	129302185	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	44591.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	5.72	9.22	4.62	3.37	8.86	11.25	4.22	2.65	12.49
Merged-chr19-60817771-2	chr19	60817275	60818275	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	6220.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	32.04	50.23	44.4	43.18	49.45	66.71	69.71	76.94	73.69
Merged-chr7-120226633-2	chr7	120226148	120227148	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026458, intron 9 of 30)	intron (NM_026458, intron 9 of 30)	22684.0	NM_026458	67928.0	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	3.43	7.37	0.0	7.42	8.4	8.04	5.28	3.1	2.5
Merged-chr8-36173199-1	chr8	36172699	36173699	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17189.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	13.73	12.9	17.57	7.42	16.79	20.9	2.11	3.98	5.0
Merged-chr12-32230265-2	chr12	32229763	32230763	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21614.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	21.74	14.75	5.55	22.94	17.26	14.47	17.96	9.73	16.86
Merged-chr15-18823614-2	chr15	18823120	18824120	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	3291.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	3.43	2.76	3.7	2.02	4.2	8.04	10.56	7.07	3.75
Merged-chr11-50207402-2	chr11	50206971	50207971	+	798.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011018, exon 3 of 8)	exon (NM_011018, exon 3 of 8)	3349.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	14.87	6.91	12.95	13.49	3.73	8.84	6.34	4.42	7.49
Merged-chr5-140818816-1	chr5	140818316	140819316	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	11615.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	26.31	38.25	37.92	27.66	31.72	48.23	24.29	24.32	10.62
Merged-chr8-24540997-2	chr8	24540475	24541475	+	798.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	35358.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	5.15	2.76	0.0	2.02	3.27	0.0	5.28	7.96	8.74
Merged-chr12-79137093-1	chr12	79136593	79137593	+	798.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	L2b|LINE|L2	6305.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	19.45	17.97	14.8	81.64	76.51	104.49	29.57	43.77	19.98
Merged-chrX-71214333-3	chrX	71213828	71214828	+	798.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019926)	promoter-TSS (NM_019926)	-678.0	NM_001164192	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	58.35	63.59	38.85	43.18	35.92	38.58	47.53	62.79	31.85
Merged-chr3-88592862-3	chr3	88592364	88593364	+	798.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13256.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	44.62	51.61	34.22	40.48	52.25	81.18	41.19	38.03	24.98
Merged-chr10-23180240-2	chr10	23179735	23180735	+	798.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	169655.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	9.72	11.98	6.47	25.64	24.72	13.66	16.9	26.53	9.99
Merged-chr5-65515122-2	chr5	65514612	65515612	+	798.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22133.0	NM_016786	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	6.29	7.83	3.7	7.42	7.46	2.41	6.34	3.1	11.24
Merged-chr16-92692358-3	chr16	92691852	92692852	+	798.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	4977.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	35.47	20.74	21.27	24.96	19.13	17.68	16.9	11.05	19.98
Merged-chr7-79848182-3	chr7	79847669	79848669	+	798.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008486)	promoter-TSS (NM_008486)	41.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	10.3	3.69	3.7	12.14	2.33	11.25	4.22	1.77	8.12
Merged-chr10-63223279-3	chr10	63222771	63223771	+	798.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19319.0	NM_182992	68802.0	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	9.15	3.23	0.0	11.47	6.53	10.45	9.51	2.65	5.62
Merged-chr11-43412952-3	chr11	43412455	43413455	+	798.633301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13026.0	NM_013917	30939.0	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	2.29	2.76	0.0	8.1	3.73	0.0	5.28	4.42	2.5
Merged-chr1-152571537-2	chr1	152571042	152572042	+	798.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	53675.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	20.59	23.96	12.95	29.01	19.13	20.09	23.24	16.8	18.74
Merged-chr12-70714418-5	chr12	70713876	70714876	+	798.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111138.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	69.22	107.82	85.1	80.29	105.43	97.26	65.48	72.96	52.46
Merged-chr7-145106650-1	chr7	145106150	145107150	+	798.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101469.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.01	7.37	2.77	2.02	6.06	1.61	2.11	3.98	4.37
Merged-chr2-148500534-4	chr2	148500094	148501094	+	798.55835	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57059.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	25.74	12.9	0.0	14.17	12.6	8.84	12.67	10.61	7.49
Merged-chr4-97778539-3	chr4	97778031	97779031	+	798.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 1 of 10)	CpG	905.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	45.76	15.67	47.17	56.68	17.73	27.33	36.97	19.46	19.36
Merged-chr8-104376949-3	chr8	104376385	104377385	+	798.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC|LINE|L1	18922.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	46.34	76.95	51.8	64.77	65.31	53.05	58.09	75.17	49.96
Merged-chr19-11350265-3	chr19	11349727	11350727	+	798.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-14081.0	NM_027836	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	48.05	56.68	34.22	65.45	41.05	49.03	40.14	43.77	29.98
Merged-chr10-88794895-2	chr10	88794392	88795392	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175158, intron 22 of 61)	intron (NM_175158, intron 22 of 61)	31922.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	14.87	17.97	33.3	21.59	18.19	35.37	10.56	13.71	23.73
Merged-chr6-124874981-2	chr6	124874480	124875480	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013488, intron 3 of 9)	intron (NM_013488, intron 3 of 9)	-10997.0	NM_001355257	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	26.31	12.44	29.6	18.22	8.4	15.27	12.67	9.29	5.62
Merged-chr8-124290990-1	chr8	124290490	124291490	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	59596.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.0	6.45	4.62	4.05	5.13	11.25	2.11	1.33	3.75
Merged-chr8-82366978-2	chr8	82366507	82367507	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	L1_Mus3|LINE|L1	35579.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	20.59	28.57	19.42	19.57	10.26	28.13	13.73	12.38	13.12
Merged-chr4-101652933-1	chr4	101652433	101653433	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	5150.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	89.24	136.39	92.5	92.44	87.24	132.63	76.05	107.0	70.57
Merged-chr7-145029284-3	chr7	145028809	145029809	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89384.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	6.29	5.07	0.0	7.42	4.2	11.25	3.17	9.29	1.25
Merged-chrX-12858674-1	chrX	12858174	12859174	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78199.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	35.47	24.88	12.02	33.74	28.46	24.92	24.29	14.15	16.24
Merged-chrX-101636642-2	chrX	101636130	101637130	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3421.0	NM_139144	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	26.31	32.25	3.7	33.74	29.86	42.6	38.02	26.09	18.74
Merged-chr14-66230118-1	chr14	66229618	66230618	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-16294.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	83.52	52.99	84.17	87.71	45.25	64.3	80.27	56.6	36.22
Merged-chr4-149143758-2	chr4	149143256	149144256	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6156.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	6.29	8.75	5.55	7.42	9.33	20.09	5.28	5.75	6.25
Merged-chr7-66354676-2	chr7	66354171	66355171	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	(CAAAA)n|Simple_repeat|Simple_repeat	27053.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	61.78	50.23	37.92	51.28	22.39	59.48	45.42	34.05	47.46
Merged-chrX-56827674-1	chrX	56827174	56828174	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5349.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	9.72	7.83	9.25	8.1	7.46	17.68	9.51	5.31	7.49
Merged-chr14-25858126-1	chr14	25857626	25858626	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	intron (NM_013469, intron 1 of 14)	15971.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	28.6	18.89	21.27	28.34	19.59	20.9	23.24	15.03	13.12
Merged-chr15-8446085-3	chr15	8445565	8446565	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1602.0	NM_201232	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	135.58	136.39	64.75	129.55	117.09	102.08	159.48	202.07	83.69
Merged-chr13-100669613-1	chr13	100669113	100670113	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_183115, exon 1 of 12)	5' UTR (NM_183115, exon 1 of 12)	132.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	17.73	18.89	12.95	29.01	34.52	24.92	40.14	31.39	21.23
Merged-chr1-72226421-1	chr1	72225921	72226921	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	U2|snRNA|snRNA	-14107.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	20.59	13.36	4.62	12.82	9.8	23.31	15.84	12.82	10.62
Merged-chr13-95870238-1	chr13	95869738	95870738	+	798.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	21684.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	7.44	7.83	5.55	10.12	4.67	10.45	39.08	30.95	18.11
Merged-chrX-101645712-2	chrX	101645215	101646215	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 3 of 21)	intron (NM_001290535, intron 3 of 21)	5497.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	13.73	15.21	8.32	15.52	10.73	3.22	25.35	27.41	21.23
Merged-chr16-94488540-2	chr16	94488041	94489041	+	798.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38088.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	9.15	4.61	1.85	8.1	4.67	4.82	1.06	3.1	1.25
Merged-chr10-57688161-1	chr10	57687661	57688661	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039050, intron 2 of 4)	intron (NM_001039050, intron 2 of 4)	37180.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.0	7.37	5.55	13.49	8.4	5.63	8.45	7.52	3.75
Merged-chr12-102392170-2	chr12	102391689	102392689	+	798.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	47624.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.17	17.51	18.5	16.87	11.66	24.11	13.73	22.99	16.86
Merged-chr8-41006470-2	chr8	41005975	41006975	+	798.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-10993.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	71.51	55.29	25.9	51.95	43.85	45.82	52.81	47.31	29.35
Merged-chr7-88226346-3	chr7	88225860	88226860	+	798.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51725.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	89.24	95.84	72.15	63.42	66.71	80.38	109.84	111.87	70.57
Merged-chr18-23566405-3	chr18	23565914	23566914	+	798.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361215, intron 3 of 19)	intron (NM_001361215, intron 3 of 19)	68932.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	1.14	2.3	0.0	1.35	1.87	6.43	5.28	0.0	1.25
Merged-chr10-68541825-3	chr10	68541340	68542340	+	798.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028491)	promoter-TSS (NM_028491)	35.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	20.59	19.81	0.0	29.01	19.13	6.43	12.67	16.8	3.75
Merged-chr4-141663732-2	chr4	141663235	141664235	+	798.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	CpG	380.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	221.38	220.72	193.32	192.29	220.66	157.54	219.69	224.18	148.01
Merged-chr5-107980135-1	chr5	107979635	107980635	+	798.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	L1MB2|LINE|L1	6942.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	14.87	25.34	9.25	26.99	14.93	45.01	24.29	27.41	33.72
Merged-chr2-166447499-3	chr2	166446996	166447996	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015558)	promoter-TSS (NR_015558)	45.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	283.17	211.5	136.89	342.08	224.39	204.16	356.99	343.12	141.14
Merged-chr1-156037393-3	chr1	156036885	156037885	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160018)	promoter-TSS (NM_001160018)	-905.0	NM_001160018	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	168.18	176.94	141.52	147.76	115.69	116.55	198.56	267.95	116.79
Merged-chr6-42433726-3	chr6	42433233	42434233	+	798.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207028)	promoter-TSS (NM_207028)	-802.0	NM_207028	387353.0	Mm.377914	NM_207028	ENSMUSG00000048284	Tas2r126	T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35	taste receptor, type 2, member 126	protein-coding	5.72	5.07	5.55	12.82	5.13	8.04	3.17	3.1	2.5
Merged-chr13-98354303-2	chr13	98353813	98354813	+	798.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008242)	promoter-TSS (NM_008242)	68.0	NM_008242	15229.0	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	8.01	0.46	0.92	2.02	0.47	6.43	1.06	0.88	0.0
Merged-chrY-90812843-1	chrY	90812343	90813343	+	798.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	IMPB_01|Satellite|Satellite	26563.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	1.14	0.92	0.0	3.37	0.93	0.0	9.51	3.1	38.1
Merged-chr9-99240784-1	chr9	99240284	99241284	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2557.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	7.44	3.69	5.55	8.77	6.06	9.65	6.34	5.31	9.37
Merged-chr6-145517135-1	chr6	145516635	145517635	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82210.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	5.72	3.69	2.77	2.7	3.73	1.61	0.0	0.88	0.0
Merged-chrX-74248757-3	chrX	74248252	74249252	+	798.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2218.0	NM_001290421	192176.0	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	28.6	15.21	19.42	17.54	9.8	12.06	15.84	22.99	8.74
Merged-chr5-5719480-1	chr5	5718980	5719980	+	798.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-24912.0	NM_028734	74051.0	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	2.86	2.3	0.0	8.77	7.0	8.04	0.0	1.77	7.49
Merged-chr19-42144758-3	chr19	42144268	42145268	+	798.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2621.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	21.17	19.81	18.5	31.04	9.8	8.04	7.39	6.63	12.49
Merged-chrX-85919189-3	chrX	85918703	85919703	+	798.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48930.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	4.58	5.99	9.25	5.4	2.33	6.43	7.39	7.07	1.25
Merged-chr9-61978034-2	chr9	61977516	61978516	+	798.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	(CA)n|Simple_repeat|Simple_repeat	-31217.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	92.1	107.82	89.72	93.11	76.51	102.08	123.57	114.08	75.57
Merged-chr4-155959490-3	chr4	155958992	155959992	+	798.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001039157, exon 8 of 8)	3' UTR (NM_001039157, exon 8 of 8)	-2820.0	NM_026125	67389.0	Mm.29140	NM_026125	ENSMUSG00000023571	C1qtnf12	1110035L05Rik|C1qdc2|CTRP12|Fam132a|alipolin	C1q and tumor necrosis factor related 12	protein-coding	8.58	2.76	0.0	6.75	1.4	3.22	9.51	3.1	9.99
Merged-chr3-101030772-1	chr3	101030272	101031272	+	798.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1277.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	1.72	2.3	2.77	6.07	2.8	8.04	3.17	0.0	3.12
Merged-chr1-74362915-2	chr1	74362460	74363460	+	798.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033345, intron 3 of 9)	intron (NM_001033345, intron 3 of 9)	852.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	6.86	3.69	5.55	35.09	18.19	24.92	22.18	21.22	29.98
Merged-chr12-4539682-3	chr12	4539194	4540194	+	798.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	15581.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	12.59	15.21	14.8	10.12	20.06	21.7	7.39	15.92	17.49
Merged-chr19-10979387-3	chr19	10978902	10979902	+	798.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034898, intron 6 of 6)	intron (NM_001034898, intron 6 of 6)	-4732.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	30.32	23.04	22.2	10.8	20.53	31.35	16.9	26.09	28.1
Merged-chr6-37589760-3	chr6	37589263	37590263	+	798.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59590.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	2.29	1.38	7.4	6.07	1.87	0.0	2.11	2.65	1.25
Merged-chr1-55836898-3	chr1	55836382	55837382	+	798.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-94359.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	9.72	14.28	12.02	11.47	7.46	16.08	23.24	23.43	11.87
Merged-chr2-93470387-3	chr2	93469896	93470896	+	798.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040532)	TTS (NR_040532)	-7446.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	8.01	6.91	1.85	3.37	5.6	10.45	5.28	4.86	10.62
Merged-chr8-117121464-3	chr8	117120975	117121975	+	798.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021486, intron 7 of 10)	intron (NM_021486, intron 7 of 10)	25610.0	NM_001163028	63857.0	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	6.86	3.23	0.92	4.05	4.2	4.82	1.06	6.19	3.12
Merged-chr2-166674853-1	chr2	166674353	166675353	+	798.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	GC_rich|Low_complexity|Low_complexity	38979.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	17.16	8.29	12.95	14.84	12.13	10.45	25.35	7.52	5.0
Merged-chr7-90035248-2	chr7	90034753	90035753	+	798.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	intron (NR_110365, intron 1 of 5)	6094.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	76.08	75.57	68.45	98.51	94.23	89.22	64.43	94.62	59.33
Merged-chr3-121104995-2	chr3	121104495	121105495	+	798.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66700.0	NM_028456	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	6.29	4.15	0.0	4.05	2.8	1.61	2.11	2.21	5.0
Merged-chr2-152346933-2	chr2	152346460	152347460	+	798.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033505, intron 1 of 4)	MER113|DNA|hAT-Charlie	1291.0	NR_033505	791417.0	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	-	predicted gene 14164	ncRNA	23.45	18.89	40.7	11.47	16.33	20.09	13.73	13.71	25.61
Merged-chr18-12102310-2	chr18	12101820	12102820	+	798.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178801, intron 4 of 14)	intron (NM_178801, intron 4 of 14)	19217.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	1.14	3.23	0.0	4.05	1.4	7.23	3.17	0.88	2.5
Merged-chr16-92823589-3	chr16	92823096	92824096	+	798.14679	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	2478.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	40.04	31.33	12.95	54.65	36.85	36.97	44.36	22.99	12.49
Merged-chr1-183803547-3	chr1	183803053	183804053	+	798.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151520, intron 2 of 2)	intron (NR_151520, intron 2 of 2)	54576.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	43.48	23.5	7.4	51.28	21.93	4.82	27.46	25.2	9.99
Merged-chr7-139974542-2	chr7	139974040	139975040	+	798.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347613, intron 5 of 5)	intron (NM_001347613, intron 5 of 5)	4215.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.0	3.69	3.7	14.17	6.06	9.65	3.17	3.54	4.37
Merged-chr9-54578556-2	chr9	54578053	54579053	+	798.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-7958.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	12.01	13.82	16.65	18.22	8.86	14.47	12.67	28.3	3.75
Merged-chr15-9774945-2	chr15	9774438	9775438	+	798.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-26070.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	6.29	3.23	7.4	7.42	6.53	1.61	2.11	1.33	5.0
Merged-chr14-27237905-3	chr14	27237385	27238385	+	798.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027871)	promoter-TSS (NM_027871)	-125.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	28.03	23.5	18.5	36.43	29.86	17.68	17.96	7.52	6.25
Merged-chr10-67483615-3	chr10	67483122	67484122	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54247.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	6.86	2.3	1.85	4.72	3.27	4.02	0.0	0.44	5.0
Merged-chr16-65128043-3	chr16	65127552	65128552	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22268.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	9.15	5.99	0.0	4.72	4.2	2.41	7.39	3.54	2.5
Merged-chr8-123343611-3	chr8	123343095	123344095	+	798.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	10882.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	42.9	23.5	24.05	49.93	55.05	18.49	50.7	69.86	39.97
Merged-chr10-80260466-1	chr10	80259966	80260966	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	546.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	12.01	16.59	20.35	26.99	11.2	39.39	8.45	15.48	14.36
Merged-chr5-27185110-3	chr5	27184612	27185612	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-76823.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	6.29	2.3	1.85	3.37	2.33	4.82	4.22	4.42	5.0
Merged-chr15-96197539-1	chr15	96197039	96198039	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040423, intron 1 of 5)	intron (NR_040423, intron 1 of 5)	435.0	NR_040423	70040.0	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	2.86	1.38	5.55	8.77	3.73	3.22	2.11	2.21	2.5
Merged-chr17-50189061-1	chr17	50188561	50189561	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	1436.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	12.59	4.61	1.85	14.84	10.73	4.02	11.62	7.07	5.62
Merged-chr3-82030518-1	chr3	82030018	82031018	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33596.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	2.86	4.15	0.0	4.72	2.8	4.82	3.17	1.33	3.75
Merged-chr8-48011874-1	chr8	48011374	48012374	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-21323.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	8.58	10.14	0.0	9.45	14.0	13.66	9.51	7.52	8.74
Merged-chrX-77801768-2	chrX	77801270	77802270	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5810.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	22.31	12.9	14.8	18.22	16.33	20.09	11.62	12.82	5.0
Merged-chr12-99640402-3	chr12	99639893	99640893	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12419.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	30.32	23.5	22.2	26.31	27.52	16.88	85.55	74.73	65.58
Merged-chr2-129302736-1	chr2	129302236	129303236	+	798.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010554, intron 6 of 6)	intron (NM_010554, intron 6 of 6)	5366.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	22.31	16.13	24.97	12.82	9.8	35.37	23.24	7.96	16.86
Merged-chr4-144988522-1	chr4	144988022	144989022	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	95385.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.15	1.38	3.7	7.42	2.33	4.82	3.17	3.54	5.0
Merged-chr1-161556886-1	chr1	161556386	161557386	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62229.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.57	4.15	1.85	3.37	2.33	3.22	1.06	0.88	1.25
Merged-chr6-31124191-3	chr6	31123689	31124689	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-61096.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	122.99	106.9	114.69	117.4	109.16	111.73	174.27	164.49	137.4
Merged-chr1-191177883-1	chr1	191177383	191178383	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 1 of 3)	Lx8|LINE|L1	5450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	13.73	4.15	3.7	12.14	3.27	8.04	7.39	2.21	5.62
Merged-chr8-69080488-1	chr8	69079988	69080988	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153054, intron 1 of 16)	L1MB2|LINE|L1	-8248.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	12.01	11.52	11.1	16.87	12.13	30.54	13.73	11.05	5.0
Merged-chr15-103305810-1	chr15	103305310	103306310	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4628.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	144.73	174.18	157.24	162.61	130.16	151.11	200.68	193.23	136.15
Merged-chr4-22358801-1	chr4	22358301	22359301	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172988, intron 1 of 8)	intron (NM_172988, intron 1 of 8)	1258.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	10.3	12.9	6.47	23.62	15.86	19.29	6.34	24.76	10.62
Merged-chr8-47370900-1	chr8	47370400	47371400	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18552.0	NM_175162	71069.0	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	2.29	1.84	1.85	4.72	0.47	0.0	3.17	1.33	1.25
Merged-chr10-118119807-1	chr10	118119307	118120307	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21980.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.29	2.76	3.7	7.42	2.33	0.0	4.22	3.1	5.0
Merged-chr1-14506614-2	chr1	14506094	14507094	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-196395.0	NM_010164	14048.0	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	4.58	2.3	0.92	5.4	4.2	3.22	2.11	2.65	3.75
Merged-chr3-88502834-2	chr3	88502326	88503326	+	798.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001111102, exon 1 of 10)	exon (NM_001111102, exon 1 of 10)	526.0	NM_001111102	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	116.7	87.55	34.22	150.46	94.23	77.97	69.71	31.84	18.74
Merged-chr1-91010820-1	chr1	91010320	91011320	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	12093.0	NM_001111312	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	14.87	10.14	14.8	8.1	8.4	20.09	15.84	5.31	9.99
Merged-chr18-52690170-1	chr18	52689670	52690670	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3509.0	NM_010293	14625.0	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	10.3	7.37	3.7	6.75	5.13	6.43	6.34	1.77	5.0
Merged-chr13-64129755-1	chr13	64129255	64130255	+	798.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001321)	promoter-TSS (NM_001001321)	-425.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	36.61	26.73	39.77	31.04	34.52	70.73	73.93	60.13	54.96
Merged-chr9-77834817-1	chr9	77834317	77835317	+	798.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80282.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.0	5.07	7.4	16.87	8.86	4.82	6.34	4.42	6.25
Merged-chr18-68195226-3	chr18	68194717	68195717	+	797.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	G-rich|Low_complexity|Low_complexity	-32729.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	102.4	91.24	71.22	97.16	87.24	95.65	107.73	98.6	78.69
Merged-chr7-75822534-3	chr7	75822046	75823046	+	797.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25792.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	7.44	3.23	6.47	11.47	4.2	3.22	3.17	2.21	2.5
Merged-chr16-21353807-3	chr16	21353305	21354305	+	797.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20449.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	15.45	4.61	5.55	7.42	5.6	3.22	14.79	3.1	2.5
Merged-chr13-83585481-3	chr13	83584974	83585974	+	797.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347576, intron 2 of 10)	intron (NM_001347576, intron 2 of 10)	11867.0	NM_001347569	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	6.29	4.15	0.0	4.72	6.06	8.04	5.28	6.19	8.74
Merged-chr2-129601151-5	chr2	129600614	129601614	+	797.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	5652.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	37.18	39.63	39.77	39.13	35.92	73.14	50.7	38.91	41.22
Merged-chr1-195012738-3	chr1	195012244	195013244	+	797.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4655.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	14.87	12.44	13.87	10.8	14.93	10.45	5.28	8.4	9.99
Merged-chr11-62808166-3	chr11	62807658	62808658	+	797.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12095.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	12.01	12.44	7.4	6.07	7.46	4.82	3.17	4.42	6.87
Merged-chr6-124917930-3	chr6	124917395	124918395	+	797.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026988)	promoter-TSS (NM_026988)	51.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	108.69	46.54	77.7	98.51	41.99	58.68	85.55	33.16	36.85
Merged-chr6-72566194-3	chr6	72565701	72566701	+	797.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144917, exon 13 of 13)	3' UTR (NM_144917, exon 13 of 13)	16554.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	8.01	2.76	1.85	4.72	1.87	3.22	0.0	1.77	2.5
Merged-chr6-34876872-2	chr6	34876380	34877380	+	797.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135611, intron 1 of 3)	intron (NM_001135611, intron 1 of 3)	1185.0	NM_199145	78412.0	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Cyren|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	36.04	38.25	22.2	65.45	46.18	56.27	32.74	27.41	18.74
Merged-chr10-67634016-2	chr10	67633538	67634538	+	797.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62079.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	43.48	25.8	41.62	29.01	14.93	28.94	47.53	47.31	29.98
Merged-chr1-134987718-2	chr1	134987209	134988209	+	797.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033409, exon 18 of 18)	exon (NM_001033409, exon 18 of 18)	25144.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	4.0	2.76	5.55	5.4	3.73	3.22	3.17	0.0	3.75
Merged-chr11-51857268-3	chr11	51856788	51857788	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 1 of 12)	CpG	193.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	224.25	176.94	253.44	236.83	246.32	263.64	284.11	235.68	162.38
Merged-chr4-11481892-3	chr4	11481395	11482395	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4063.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	21.74	32.72	29.6	26.99	14.46	17.68	28.52	30.51	18.74
Merged-chr8-26380861-1	chr8	26380361	26381361	+	797.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	222692.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	2.29	4.15	1.85	5.4	5.13	2.41	2.11	1.77	2.5
Merged-chr3-137879500-3	chr3	137878988	137879988	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	RSINE1|SINE|B4	11813.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	93.24	54.37	42.55	83.66	49.92	43.4	61.26	58.81	48.09
Merged-chr10-120140400-3	chr10	120139904	120140904	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27439.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	15.45	9.68	8.32	16.87	9.8	15.27	32.74	13.71	19.98
Merged-chr8-95713781-3	chr8	95713283	95714283	+	797.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001195006, exon 15 of 15)	3' UTR (NM_001195006, exon 15 of 15)	-2130.0	NM_001035123	66083.0	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.57	0.92	5.55	1.35	0.47	1.61	0.0	0.0	5.0
Merged-chr4-102759316-1	chr4	102758816	102759816	+	797.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285852)	promoter-TSS (NM_001285852)	-819.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	26.89	13.82	6.47	26.31	28.46	12.06	7.39	6.19	5.0
Merged-chr11-115717987-3	chr11	115717535	115718535	+	797.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9438.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	13.73	11.98	18.5	11.47	14.0	14.47	9.51	8.84	7.49
Merged-chr13-21780418-3	chr13	21779898	21780898	+	797.777771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020034, exon 1 of 1)	exon (NM_020034, exon 1 of 1)	227.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	81.23	129.02	60.12	58.03	59.25	71.54	155.26	175.98	106.79
Merged-chr13-24757982-3	chr13	24757486	24758486	+	797.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020567, intron 2 of 6)	intron (NM_020567, intron 2 of 6)	3951.0	NM_020567	57441.0	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	75.51	83.86	49.02	64.1	75.57	53.05	84.49	109.66	69.32
Merged-chr14-66847315-1	chr14	66846815	66847815	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	21285.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	21.17	29.95	7.4	54.65	27.06	16.08	45.42	38.91	57.46
Merged-chr15-78326529-2	chr15	78326026	78327026	+	797.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	536.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	75.51	55.75	74.0	70.85	43.85	69.13	128.85	76.05	66.82
Merged-chr16-17561355-2	chr16	17560869	17561869	+	797.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011028)	promoter-TSS (NM_011028)	-122.0	NM_001145435	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	45.19	20.74	4.62	47.9	50.85	22.51	2.11	1.33	3.12
Merged-chr7-140953347-2	chr7	140952866	140953866	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2595.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	161.32	147.45	130.42	145.06	116.16	118.96	132.02	116.73	106.79
Merged-chr2-13439093-2	chr2	13438595	13439595	+	797.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	52781.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	6.86	1.84	3.7	4.72	3.27	1.61	3.17	3.54	2.5
Merged-chr12-80213481-3	chr12	80212973	80213973	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	MIR3|SINE|MIR	46898.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	37.76	23.04	16.65	32.39	18.66	16.88	41.19	28.74	21.23
Merged-chr9-88436837-1	chr9	88436337	88437337	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	2114.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	3.43	4.61	1.85	4.72	2.33	4.82	8.45	2.21	9.99
Merged-chr4-8857618-1	chr4	8857118	8858118	+	797.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355382, intron 31 of 36)	intron (NM_001355382, intron 31 of 36)	106294.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.58	2.76	7.4	2.02	2.33	2.41	21.12	12.38	18.74
Merged-chr2-90557173-3	chr2	90556760	90557760	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L1MC4a|LINE|L1	23387.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	110.41	153.9	86.02	103.23	84.44	106.9	117.24	146.36	95.55
Merged-chr5-66114755-3	chr5	66114259	66115259	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16580.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	77.23	79.72	69.37	85.01	68.58	81.18	86.61	113.64	87.43
Merged-chr10-117304555-1	chr10	117304055	117305055	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	8.58	10.14	7.4	6.75	10.73	14.47	8.45	6.19	11.24
Merged-chr4-72168680-1	chr4	72168180	72169180	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285531, intron 6 of 6)	intron (NM_001285531, intron 6 of 6)	32213.0	NM_011599	21885.0	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.29	5.53	7.4	10.8	9.33	24.92	8.45	18.13	6.87
Merged-chr5-105416334-3	chr5	105415837	105416837	+	797.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033550, intron 1 of 4)	intron (NM_001033550, intron 1 of 4)	562.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	130.43	86.17	49.95	92.44	51.32	53.05	72.88	42.89	16.86
Merged-chr13-99438019-1	chr13	99437519	99438519	+	797.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008634, intron 4 of 6)	L3|LINE|CR1	-25193.0	NR_015515	320893.0	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	4.58	9.68	12.95	1.35	5.13	5.63	2.11	1.77	6.87
Merged-chr4-59199531-2	chr4	59199034	59200034	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	9984.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	8.01	4.15	5.55	2.7	8.4	14.47	3.17	3.54	3.12
Merged-chr1-149959912-2	chr1	149959427	149960427	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	1363.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	98.97	126.25	74.92	90.41	121.76	41.8	146.81	124.69	69.32
Merged-chr7-64409041-2	chr7	64408558	64409558	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	16436.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	5.72	4.61	3.7	10.8	7.46	5.63	4.22	5.31	11.24
Merged-chr7-113523115-2	chr7	113522619	113523619	+	797.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	MER103C|DNA|hAT-Charlie	9285.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	10.87	9.68	9.25	6.75	9.33	4.82	4.22	5.31	8.12
Merged-chr9-63614749-3	chr9	63614242	63615242	+	797.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	12096.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	164.75	161.27	92.5	145.74	143.22	109.32	179.55	202.07	75.57
Merged-chr6-135362749-1	chr6	135362249	135363249	+	797.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010128)	promoter-TSS (NM_010128)	-182.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	8.58	2.3	1.85	10.8	4.2	1.61	2.11	1.33	0.62
Merged-chr1-152528400-2	chr1	152527895	152528895	+	797.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001346119, exon 15 of 18)	exon (NM_001346119, exon 15 of 18)	96822.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	118.42	91.24	51.8	106.61	83.97	70.73	97.17	103.02	40.59
Merged-chr3-79566823-3	chr3	79566336	79567336	+	797.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	843.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	92.1	78.79	29.6	94.46	96.1	69.13	83.44	70.3	33.72
Merged-chr4-120016899-3	chr4	120016394	120017394	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-144312.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.72	3.23	1.85	4.72	3.73	4.82	2.11	3.54	5.0
Merged-chr4-132261089-3	chr4	132260602	132261602	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 1 of 10)	CpG	447.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	151.02	113.81	154.47	109.3	106.36	142.27	200.68	157.41	139.27
Merged-chr3-139049020-3	chr3	139048500	139049500	+	797.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	26201.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	45.19	76.03	45.32	34.41	41.99	53.05	35.91	39.35	58.71
Merged-chr17-36161335-2	chr17	36160836	36161836	+	797.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	7201.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.57	1.38	0.0	7.42	2.33	12.86	12.67	14.15	2.5
Merged-chr3-88325034-3	chr3	88324527	88325527	+	797.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020003)	promoter-TSS (NM_020003)	4.0	NM_020003	56700.0	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	61.21	84.32	46.25	67.47	88.17	52.25	70.76	74.28	38.72
Merged-chr16-23181775-2	chr16	23181270	23182270	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155420, intron 1 of 2)	intron (NR_155420, intron 1 of 2)	6490.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	6.86	6.91	3.7	19.57	5.13	12.06	5.28	6.63	8.74
Merged-chr7-95853657-1	chr7	95853157	95854157	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-317587.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	6.29	1.84	8.32	2.02	5.13	1.61	2.11	1.33	6.25
Merged-chr1-160293633-2	chr1	160293129	160294129	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	2343.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	4.58	3.69	0.0	6.75	5.13	8.04	2.11	0.0	5.0
Merged-chr11-106131968-2	chr11	106131458	106132458	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 6 of 15)	intron (NM_011947, intron 6 of 15)	27969.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	45.19	32.72	20.35	56.0	33.59	36.17	51.75	56.6	24.98
Merged-chr11-116531771-3	chr11	116531253	116532253	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001172475)	promoter-TSS (NM_001172475)	-158.0	NM_001172475	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	1.72	3.23	1.85	1.35	2.8	1.61	6.34	4.86	6.25
Merged-chr9-65205601-1	chr9	65205101	65206101	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9089.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	22.31	34.1	30.52	39.81	68.58	48.23	42.25	49.52	16.86
Merged-chrX-140457747-1	chrX	140457247	140458247	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021463, intron 1 of 6)	intron (NM_021463, intron 1 of 6)	1144.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	5.72	5.07	0.0	16.19	4.67	6.43	13.73	6.19	6.25
Merged-chr5-91139605-2	chr5	91139106	91140106	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009704)	promoter-TSS (NM_009704)	7.0	NM_009704	11839.0	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	5.15	2.3	5.55	4.72	1.87	0.0	5.28	0.88	1.87
Merged-chr9-58630634-2	chr9	58630126	58631126	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357751, intron 4 of 8)	intron (NM_001357751, intron 4 of 8)	48386.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	16.02	19.35	16.65	42.51	45.25	40.99	71.82	75.17	39.97
Merged-chr8-34765091-3	chr8	34764590	34765590	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42520.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.58	1.84	3.7	1.35	1.4	0.0	4.22	4.86	1.25
Merged-chr13-73458799-2	chr13	73458336	73459336	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8547.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	8.01	8.75	12.02	17.54	10.73	7.23	5.28	7.52	6.87
Merged-chr8-39427458-2	chr8	39426959	39427959	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129479.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	12.59	16.13	9.25	16.19	17.73	16.08	0.0	5.75	1.25
Merged-chr13-94159684-2	chr13	94159188	94160188	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101892.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	12.01	13.82	18.5	18.22	9.33	28.13	7.39	6.19	3.75
Merged-chr4-119331562-2	chr4	119331051	119332051	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001270435, exon 12 of 15)	exon (NM_001270435, exon 12 of 15)	-11028.0	NM_001110130	66101.0	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	5.72	5.07	3.7	2.02	3.73	1.61	7.39	3.1	9.99
Merged-chr6-87730807-3	chr6	87730337	87731337	+	797.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159697)	promoter-TSS (NM_001159697)	-32.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	14.3	5.07	9.25	39.81	18.19	14.47	9.51	5.75	3.12
Merged-chr2-173356197-1	chr2	173355697	173356697	+	797.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79664.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	3.43	0.92	1.85	6.75	4.2	7.23	14.79	5.31	6.87
Merged-chr18-8370492-2	chr18	8370006	8371006	+	797.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	500793.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	5.72	8.29	6.47	12.14	0.93	7.23	4.22	5.31	2.5
Merged-chr1-36614756-2	chr1	36614258	36615258	+	797.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	MTD|LTR|ERVL-MaLR	-21426.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	54.92	55.75	60.12	35.09	24.26	33.76	25.35	19.46	40.59
Merged-chr6-83010196-3	chr6	83009700	83010700	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	RMER6B|LTR|ERVK	23271.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	72.65	89.85	73.07	68.82	66.24	81.99	144.7	140.17	84.94
Merged-chr14-56689917-3	chr14	56689419	56690419	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11081.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	30.89	43.77	24.97	60.05	40.59	31.35	41.19	57.48	14.36
Merged-chr9-86631322-3	chr9	86630819	86631819	+	797.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008615, intron 6 of 13)	intron (NM_008615, intron 6 of 13)	55958.0	NM_001198933	17436.0	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	14.3	13.82	5.55	24.29	8.86	11.25	11.62	7.96	3.75
Merged-chr6-82781098-3	chr6	82780563	82781563	+	797.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6609.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	20.02	26.26	13.87	21.59	25.19	26.53	16.9	25.2	5.0
Merged-chr7-114193849-2	chr7	114193357	114194357	+	797.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60823.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	23.45	29.49	46.25	42.51	33.12	26.53	77.1	56.16	28.1
Merged-chr3-38013114-3	chr3	38012539	38013539	+	797.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114226.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	5.15	3.23	6.47	8.1	2.33	9.65	9.51	9.73	7.49
Merged-chr6-38807168-2	chr6	38806582	38807582	+	797.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	MIRb|SINE|MIR	30229.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	48.62	60.36	38.85	73.54	53.65	60.28	55.98	43.77	27.48
Merged-chrX-38581308-1	chrX	38580808	38581808	+	797.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5112.0	NM_001110142	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	14.87	28.57	9.25	18.22	9.8	19.29	16.9	21.67	9.99
Merged-chr16-64941981-3	chr16	64941503	64942503	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008310, intron 2 of 2)	RLTR14|LTR|ERV1	90002.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	6.29	2.3	7.4	3.37	4.2	3.22	3.17	6.19	7.49
Merged-chr3-146030382-3	chr3	146029882	146030882	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42512.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	5.72	2.76	3.7	4.72	0.93	0.0	0.0	3.98	3.75
Merged-chr4-47398413-3	chr4	47397909	47398909	+	797.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312869, intron 3 of 7)	intron (NM_001312869, intron 3 of 7)	12193.0	NM_001312869	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.15	12.9	5.55	10.8	4.2	8.04	9.51	6.19	1.25
Merged-chr1-154112653-1	chr1	154112153	154113153	+	797.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-88534.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	14.87	12.9	15.72	26.99	15.39	16.88	2.11	10.61	11.24
Merged-chrX-142361300-3	chrX	142360804	142361804	+	797.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	29231.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	73.79	104.14	45.32	116.05	125.49	77.16	94.0	151.66	46.22
Merged-chr6-134414192-3	chr6	134413811	134414811	+	797.301575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355686)	promoter-TSS (NM_001355686)	-117.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	34.9	36.4	24.05	34.41	31.72	22.51	25.35	21.22	19.98
Merged-chr8-25603525-3	chr8	25603100	25604100	+	797.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	intron (NM_001001735, intron 1 of 9)	1316.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	57.78	49.76	35.15	41.16	32.19	46.62	74.99	97.72	35.6
Merged-chr19-46137317-3	chr19	46136812	46137812	+	797.294434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008852, intron 2 of 3)	intron (NM_008852, intron 2 of 3)	5413.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	7.44	5.99	1.85	4.05	2.33	0.0	1.06	1.33	5.0
Merged-chr7-53608377-2	chr7	53607879	53608879	+	797.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	283510.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.43	2.76	1.85	6.07	6.53	9.65	13.73	16.8	7.49
Merged-chr6-134205313-3	chr6	134204814	134205814	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	169614.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.87	3.69	4.62	10.8	5.6	6.43	2.11	2.21	2.5
Merged-chr2-28464129-3	chr2	28463613	28464613	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027040, intron 2 of 2)	intron (NM_027040, intron 2 of 2)	2211.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	4.0	3.23	2.77	2.02	1.87	0.0	4.22	0.44	5.62
Merged-chr6-83137726-3	chr6	83137216	83138216	+	797.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133641, exon 1 of 12)	5' UTR (NM_133641, exon 1 of 12)	632.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	16.02	11.06	14.8	18.22	23.33	17.68	6.34	7.52	6.87
Merged-chr19-46488721-1	chr19	46488221	46489221	+	797.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015752)	TTS (NM_015752)	-12927.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	29.17	18.43	27.75	35.09	20.99	45.82	22.18	25.65	27.48
Merged-chr5-65937353-2	chr5	65936927	65937927	+	797.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29697.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	36.61	23.5	26.82	28.34	35.45	17.68	32.74	34.93	19.98
Merged-chr7-19849776-2	chr7	19849247	19850247	+	797.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2256.0	NM_001270489	100502736.0	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	10.87	7.37	1.85	6.75	4.67	7.23	9.51	7.52	7.49
Merged-chr10-40882345-3	chr10	40881894	40882894	+	797.226196	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027879, intron 1 of 14)	intron (NM_027879, intron 1 of 14)	749.0	NM_027879	71713.0	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	98.97	133.63	64.75	99.86	110.1	109.32	144.7	141.94	80.56
Merged-chr9-108344415-3	chr9	108343933	108344933	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3398.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	17.73	11.06	8.32	12.14	5.6	12.86	19.01	5.31	10.62
Merged-chr17-64602900-2	chr17	64602402	64603402	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 1 of 21)	intron (NM_008549, intron 1 of 21)	1253.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	69.22	52.99	14.8	67.47	76.97	43.4	76.05	48.2	34.35
Merged-chr15-90654424-1	chr15	90653924	90654924	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	24964.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.58	2.3	5.55	5.4	2.33	0.0	2.11	5.31	8.74
Merged-chr17-29416541-2	chr17	29416059	29417059	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55645.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	2.86	5.99	8.32	4.72	0.93	0.8	9.51	4.42	3.75
Merged-chr14-21941731-3	chr14	21941255	21942255	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	47846.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	6.86	2.3	0.0	4.05	7.0	3.22	5.28	4.42	2.5
Merged-chr15-76312481-1	chr15	76311981	76312981	+	797.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5236.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	69.22	64.51	94.35	60.05	56.91	98.87	58.09	33.16	53.08
Merged-chr13-30633258-3	chr13	30632764	30633764	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18221.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	12.59	11.06	12.02	10.8	4.67	11.25	9.51	9.73	11.24
Merged-chr4-125144401-3	chr4	125143904	125144904	+	797.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16523.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	63.5	45.62	40.7	26.99	29.39	66.71	27.46	27.41	19.98
Merged-chr11-32238625-2	chr11	32238132	32239132	+	797.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284359, intron 9 of 13)	intron (NM_001284359, intron 9 of 13)	12127.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	2.29	1.38	0.0	4.72	0.0	4.82	5.28	1.77	0.0
Merged-chr8-11475328-2	chr8	11474811	11475811	+	797.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2618.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	81.23	48.84	40.7	73.54	42.92	37.78	80.27	59.69	45.59
Merged-chr6-99028951-3	chr6	99028440	99029440	+	797.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001197322)	promoter-TSS (NM_001197322)	-642.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	28.03	9.68	9.25	15.52	7.0	12.86	19.01	7.07	10.62
Merged-chr9-64091332-2	chr9	64090825	64091825	+	797.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10564.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	22.31	14.75	14.8	43.18	30.79	22.51	28.52	23.88	17.49
Merged-chr12-102320090-2	chr12	102319573	102320573	+	797.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 2 of 9)	ORR1E|LTR|ERVL-MaLR	36432.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	17.73	12.44	9.25	14.84	9.8	11.25	12.67	11.94	14.99
Merged-chr6-116228985-3	chr6	116228527	116229527	+	797.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026585, intron 15 of 30)	intron (NM_026585, intron 15 of 30)	20994.0	NM_026585	28006.0	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	46.34	44.7	36.07	47.23	20.53	40.19	31.69	27.86	43.09
Merged-chr17-35000358-3	chr17	34999834	35000834	+	797.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011690)	promoter-TSS (NM_011690)	412.0	NM_033075	110956.0	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	151.59	160.35	73.07	128.87	105.43	80.38	138.36	224.18	74.94
Merged-chr17-42875747-3	chr17	42875235	42876235	+	797.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	689.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	136.15	129.02	132.27	116.05	110.56	94.85	160.54	119.39	73.69
Merged-chr11-76495477-3	chr11	76494980	76495980	+	797.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346670)	promoter-TSS (NM_001346670)	-985.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	113.84	89.39	67.52	115.38	83.97	103.69	86.61	100.37	63.08
Merged-chr2-117842494-3	chr2	117841975	117842975	+	797.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040631, intron 2 of 5)	intron (NR_040631, intron 2 of 5)	20547.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	19.45	34.1	32.37	27.66	21.46	28.94	35.91	40.68	13.12
Merged-chr11-47221700-3	chr11	47221193	47222193	+	797.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	MTE2b|LTR|ERVL-MaLR	157609.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	6.86	7.37	4.62	4.72	4.67	6.43	4.22	5.75	3.75
Merged-chr8-25200657-3	chr8	25200136	25201136	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 1 of 12)	intron (NM_177089, intron 1 of 12)	906.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	39.47	50.69	26.82	58.03	58.78	37.78	32.74	53.94	24.36
Merged-chr15-68428573-1	chr15	68428073	68429073	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87284.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	7.44	5.07	3.7	3.37	0.93	6.43	2.11	1.77	5.0
Merged-chr5-125334795-1	chr5	125334295	125335295	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	6299.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	21.74	21.2	19.42	18.89	24.26	28.94	15.84	7.96	9.37
Merged-chr11-117090180-1	chr11	117089680	117090680	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12832.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	21.74	16.13	14.8	33.06	18.66	20.09	31.69	25.65	17.49
Merged-chr11-118015572-1	chr11	118015072	118016072	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151726, intron 8 of 9)	intron (NR_151726, intron 8 of 9)	13302.0	NR_105898	102466768.0		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	22.88	17.97	14.8	13.49	6.06	12.86	11.62	11.05	7.49
Merged-chr1-34236515-2	chr1	34236001	34237001	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 60 of 102)	intron (NM_001276764, intron 60 of 102)	76171.0	NM_010081	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.86	1.84	9.25	6.07	6.53	4.82	10.56	5.31	6.25
Merged-chr12-41494870-2	chr12	41494366	41495366	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-8809.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.15	6.91	8.32	6.07	5.6	4.82	0.0	3.1	2.5
Merged-chr4-109564987-1	chr4	109564487	109565487	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-33690.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	8.01	8.29	1.85	5.4	6.06	14.47	7.39	6.63	12.49
Merged-chr10-8754318-2	chr10	8753842	8754842	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	131728.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	31.46	18.89	17.57	20.92	17.26	20.09	39.08	12.38	13.74
Merged-chr8-117361666-1	chr8	117361166	117362166	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	12496.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	18.31	22.12	25.9	20.24	18.19	9.65	20.07	20.78	12.49
Merged-chr4-35138233-1	chr4	35137733	35138733	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-13822.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	12.01	2.3	0.0	4.05	0.47	1.61	1.06	2.65	1.25
Merged-chr2-154594100-2	chr2	154593604	154594604	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	9569.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	4.0	6.45	3.7	18.89	15.86	16.88	17.96	26.97	24.98
Merged-chr6-114872953-1	chr6	114872453	114873453	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	48868.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.29	8.75	10.17	11.47	14.0	14.47	6.34	4.86	5.62
Merged-chr14-55698247-1	chr14	55697747	55698747	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14841.0	NM_019984	21816.0	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	27.46	34.1	47.17	37.11	31.26	38.58	47.53	45.99	29.98
Merged-chr10-4787211-1	chr10	4786711	4787711	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302531, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	77053.0	NM_001302533	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.57	6.91	2.77	1.35	4.67	3.22	3.17	0.44	2.5
Merged-chr16-36821702-2	chr16	36821207	36822207	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134111, intron 2 of 5)	intron (NM_134111, intron 2 of 5)	6552.0	NM_001113401	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	2.29	5.53	1.85	4.72	4.67	1.61	2.11	1.77	3.75
Merged-chr13-58012315-1	chr13	58011815	58012815	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 14 of 16)	intron (NM_001195075, intron 14 of 16)	10885.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	2.29	4.15	0.0	2.02	2.33	2.41	2.11	0.44	5.0
Merged-chrX-9662537-1	chrX	9662037	9663037	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025975, intron 1 of 4)	intron (NM_025975, intron 1 of 4)	446.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	21.17	31.33	15.72	35.76	24.72	41.8	25.35	29.18	28.1
Merged-chr11-54427774-1	chr11	54427274	54428274	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029105)	TTS (NM_029105)	-10405.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	47.48	55.29	37.0	49.93	46.18	61.09	39.08	33.6	21.86
Merged-chr18-32818203-2	chr18	32817717	32818717	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021367, intron 4 of 4)	intron (NM_021367, intron 4 of 4)	1357.0	NR_033206	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	128.71	160.81	53.65	93.11	62.98	59.48	101.39	115.41	60.58
Merged-chr6-96116298-1	chr6	96115798	96116798	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3144.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	10.87	6.45	4.62	33.06	38.72	31.35	23.24	15.03	8.74
Merged-chr6-40454644-1	chr6	40454144	40455144	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201370, intron 4 of 11)	intron (NM_201370, intron 4 of 11)	11781.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	4.0	3.69	0.0	4.72	1.4	2.41	3.17	4.86	6.25
Merged-chr18-39635031-2	chr18	39634499	39635499	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-138498.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	17.73	9.68	5.55	13.49	13.06	13.66	15.84	10.61	6.25
Merged-chrX-57310560-1	chrX	57310060	57311060	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152801, intron 2 of 21)	intron (NM_152801, intron 2 of 21)	16041.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	20.02	12.9	12.02	17.54	13.53	13.66	15.84	15.92	6.87
Merged-chrX-38601154-3	chrX	38600607	38601607	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356360)	promoter-TSS (NM_001356360)	-152.0	NM_001361382	68995.0	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	72.08	88.47	74.0	44.53	63.45	85.2	74.99	87.11	47.46
Merged-chr3-108458862-1	chr3	108458362	108459362	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358064, intron 21 of 21)	intron (NM_001358064, intron 21 of 21)	-13603.0	NM_001204979	20226.0	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	13.73	9.22	9.25	10.8	13.06	17.68	15.84	14.15	7.49
Merged-chr2-169089282-1	chr2	169088782	169089782	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	111013.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	9.72	6.91	1.85	13.49	8.86	14.47	7.39	3.98	1.25
Merged-chr4-148042232-1	chr4	148041732	148042732	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027809, intron 2 of 12)	intron (NR_027809, intron 2 of 12)	1043.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	29.17	47.0	47.17	29.01	39.19	65.11	64.43	51.73	48.71
Merged-chr9-85272146-1	chr9	85271646	85272646	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	54978.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.58	3.23	6.47	0.67	0.93	1.61	6.34	1.77	3.75
Merged-chr12-40216491-1	chr12	40215991	40216991	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013562, intron 3 of 11)	intron (NM_013562, intron 3 of 11)	6320.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	12.01	5.53	11.1	6.75	3.73	3.22	6.34	5.31	1.25
Merged-chr4-40018372-1	chr4	40017872	40018872	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124893.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	2.29	2.3	1.85	2.02	3.73	4.02	2.11	0.88	0.0
Merged-chr12-51835334-1	chr12	51834834	51835834	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5798.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	14.3	16.13	23.12	16.19	12.13	23.31	19.01	11.94	21.23
Merged-chr8-83859766-1	chr8	83859266	83860266	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40332.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	13.16	16.13	20.35	1.35	1.4	0.0	12.67	8.4	8.74
Merged-chr10-24191593-1	chr10	24191093	24192093	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31924.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	2.86	8.29	5.55	5.4	0.93	3.22	3.17	6.63	7.49
Merged-chr5-108634220-1	chr5	108633720	108634720	+	797.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359426, intron 1 of 9)	intron (NM_001359426, intron 1 of 9)	4410.0	NM_001359426	72392.0	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	8.58	11.06	1.85	6.75	2.8	4.02	8.45	1.77	2.5
Merged-chr7-120201419-1	chr7	120200919	120201919	+	797.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	569.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	3.43	3.23	5.55	5.4	4.67	1.61	2.11	4.86	1.87
Merged-chr1-138972675-3	chr1	138972119	138973119	+	797.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	4898.0	NM_181347	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	42.33	62.67	47.17	49.25	53.18	73.95	92.94	80.92	70.57
Merged-chr6-121272134-2	chr6	121271651	121272651	+	796.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	26245.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	12.01	28.11	21.27	14.84	21.46	28.94	23.24	31.84	25.61
Merged-chr18-65583967-3	chr18	65583477	65584477	+	796.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361051, intron 1 of 8)	intron (NM_001361051, intron 1 of 8)	776.0	NM_001361051	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	31.46	15.67	14.8	22.94	21.93	24.92	13.73	6.19	10.62
Merged-chr4-40868945-3	chr4	40868426	40869426	+	796.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-14389.0	NM_022305	14595.0	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	4.58	7.83	6.47	11.47	11.2	12.86	7.39	4.86	5.0
Merged-chr10-95779990-3	chr10	95779471	95780471	+	796.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160692.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	13.73	24.42	24.97	34.41	23.79	36.17	25.35	25.65	16.86
Merged-chr2-102885537-2	chr2	102885042	102886042	+	796.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	16123.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	7.44	6.91	8.32	28.34	21.93	26.53	24.29	30.07	16.86
Merged-chr4-137883898-3	chr4	137883388	137884388	+	796.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	21651.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	4.58	2.76	5.55	9.45	4.2	10.45	13.73	11.94	4.37
Merged-chr8-111539960-3	chr8	111539448	111540448	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	MIRc|SINE|MIR	1605.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	9.15	12.9	7.4	24.96	15.86	14.47	10.56	9.29	9.99
Merged-chr9-70009060-3	chr9	70008540	70009540	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016787, exon 11 of 11)	3' UTR (NM_016787, exon 11 of 11)	-3508.0	NM_001282084	235459.0	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	26.31	45.16	38.85	24.96	35.92	36.97	35.91	32.72	18.74
Merged-chr1-193897032-3	chr1	193896537	193897537	+	796.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	325722.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.86	2.3	5.55	5.4	2.33	0.8	2.11	2.21	3.75
Merged-chr1-156624401-3	chr1	156623908	156624908	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 3 of 12)	intron (NM_001136104, intron 3 of 12)	49931.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	12.01	5.99	33.3	29.01	20.53	19.29	24.29	16.8	28.73
Merged-chr16-20412771-3	chr16	20412232	20413232	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	13662.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	18.31	24.42	6.47	38.46	30.79	24.11	38.02	36.7	28.73
Merged-chr19-56742226-3	chr19	56741729	56742729	+	796.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19857.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	56.63	42.85	24.97	40.48	35.92	40.99	59.15	68.09	31.23
Merged-chr3-59342251-2	chr3	59341753	59342753	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	L1MA4A|LINE|L1	2003.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	30.32	23.5	25.9	37.78	31.26	45.82	22.18	14.59	16.24
Merged-chr4-35158029-2	chr4	35157533	35158533	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178061)	promoter-TSS (NM_178061)	-549.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	5.72	7.37	1.85	5.4	1.87	6.43	7.39	1.77	1.25
Merged-chr18-88861723-2	chr18	88861232	88862232	+	796.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32475.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	9.15	6.45	7.4	5.4	7.0	12.86	8.45	8.84	13.12
Merged-chr15-98089972-3	chr15	98089455	98090455	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144851, intron 1 of 17)	B2_Mm2|SINE|B2	-2634.0	NM_001163488	18642.0	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	69.79	59.44	62.9	51.28	46.65	63.5	85.55	74.73	58.08
Merged-chr10-44004408-3	chr10	44003935	44004935	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_172393, exon 1 of 20)	5' UTR (NM_172393, exon 1 of 20)	411.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	51.48	63.59	46.25	43.86	50.38	39.39	57.03	48.64	28.73
Merged-chr2-35449876-3	chr2	35449378	35450378	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11571.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	29.75	35.94	37.0	42.51	28.46	16.08	16.9	9.29	16.24
Merged-chr13-21493060-1	chr13	21492560	21493560	+	796.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13464.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	5.72	5.07	0.0	0.67	1.87	9.65	1.06	5.31	5.0
Merged-chr17-27242655-3	chr17	27242155	27243155	+	796.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131118, intron 1 of 2)	intron (NR_131118, intron 1 of 2)	5411.0	NR_131118	319720.0	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	5.15	2.76	5.55	4.05	3.27	0.0	3.17	1.33	2.5
Merged-chr11-31852117-1	chr11	31851617	31852617	+	796.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18823.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	9.15	9.22	11.1	11.47	8.4	8.04	5.28	4.86	6.25
Merged-chr13-23450621-3	chr13	23450110	23451110	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15291.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	8.01	9.68	3.7	6.75	7.93	13.66	12.67	11.05	1.25
Merged-chr7-109631357-3	chr7	109630870	109631870	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	12.59	18.89	20.35	13.49	16.79	13.66	15.84	9.29	13.74
Merged-chr18-90601991-3	chr18	90601476	90602476	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	22151.0	NM_001362365	108168395.0	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	2.86	2.76	1.85	2.7	0.93	1.61	3.17	1.77	1.25
Merged-chr18-62044282-3	chr18	62043793	62044793	+	796.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	91218.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	48.05	43.31	51.8	45.88	38.25	62.7	46.47	32.28	36.22
Merged-chr14-86847549-1	chr14	86847049	86848049	+	796.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 22 of 27)	MLT1B|LTR|ERVL-MaLR	293675.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	5.72	2.3	1.85	4.72	8.86	10.45	3.17	2.65	3.75
Merged-chr9-32590099-2	chr9	32589622	32590622	+	796.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48670.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.58	2.3	3.7	1.35	2.33	5.63	0.0	0.88	2.5
Merged-chr11-11658995-3	chr11	11658525	11659525	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26900.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	11.44	12.9	11.1	9.45	7.46	9.65	4.22	9.73	8.74
Merged-chr2-136892883-3	chr2	136892382	136893382	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028834, intron 1 of 7)	intron (NM_028834, intron 1 of 7)	714.0	NM_001355669	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	74.94	90.77	49.95	44.53	80.71	46.62	55.98	72.96	53.71
Merged-chr4-139579614-3	chr4	139579133	139580133	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	4913.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	106.4	70.5	41.62	18.22	13.06	9.65	70.76	57.48	14.36
Merged-chr15-79270518-3	chr15	79270006	79271006	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177580, exon 7 of 14)	exon (NM_177580, exon 7 of 14)	15003.0	NM_177580	207495.0	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	5.72	2.3	1.85	4.05	3.27	4.82	10.56	1.77	2.5
Merged-chr10-30755264-3	chr10	30754677	30755677	+	796.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	48149.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	34.9	22.58	32.37	41.83	35.92	58.68	34.85	17.24	19.98
Merged-chr1-30930363-2	chr1	30929865	30930865	+	796.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19345.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	6.29	2.76	1.85	2.02	2.8	3.22	2.11	2.65	1.87
Merged-chr5-143038985-3	chr5	143038479	143039479	+	796.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	74041.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	41.76	38.25	22.2	26.99	14.93	25.72	26.4	11.5	26.23
Merged-chr13-55330486-3	chr13	55329991	55330991	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016662)	promoter-TSS (NM_016662)	-761.0	NM_016662	17121.0	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	16.59	5.99	14.8	17.54	11.66	26.53	17.96	12.82	3.75
Merged-chr6-15754011-3	chr6	15753511	15754511	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	33350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	40.04	40.55	32.37	38.46	34.52	22.51	40.14	39.35	31.23
Merged-chr2-160212523-3	chr2	160212034	160213034	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114960.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	83.52	80.18	48.1	93.79	71.38	86.81	90.83	85.78	61.83
Merged-chr10-9718225-3	chr10	9717727	9718727	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33505.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	19.45	41.01	30.52	41.16	33.12	45.01	41.19	44.22	49.96
Merged-chr5-72350426-1	chr5	72349926	72350926	+	796.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122756, intron 10 of 21)	intron (NM_001122756, intron 10 of 21)	147083.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.0	5.53	0.0	3.37	3.27	4.82	3.17	7.96	2.5
Merged-chrX-85778976-1	chrX	85778476	85779476	+	796.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2157.0	NM_001294138	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	18.88	7.37	10.17	8.1	5.6	8.04	13.73	16.36	3.12
Merged-chr8-117233408-3	chr8	117232926	117233926	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-23593.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	15.45	2.76	7.4	8.77	1.87	8.04	9.51	6.63	8.74
Merged-chr5-64886304-3	chr5	64885804	64886804	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46395.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	37.18	29.03	12.95	49.93	30.32	25.72	44.36	41.12	10.62
Merged-chr4-126405256-3	chr4	126404733	126405733	+	796.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153402, intron 3 of 18)	intron (NM_153402, intron 3 of 18)	24309.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	15.45	30.87	22.2	26.99	19.13	21.7	20.07	20.34	13.74
Merged-chr1-78678681-2	chr1	78678170	78679170	+	796.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028817, intron 2 of 15)	ORR1C2|LTR|ERVL-MaLR	20230.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	8.01	4.15	8.32	7.42	5.6	19.29	8.45	5.31	4.37
Merged-chr2-131321431-2	chr2	131320935	131321935	+	796.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	31457.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	13.73	8.29	9.25	16.87	9.33	12.86	4.22	3.54	7.49
Merged-chr9-116134863-2	chr9	116134303	116135303	+	796.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	B3A|SINE|B2	40560.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	26.31	32.25	33.3	58.03	29.86	40.19	14.79	12.38	6.87
Merged-chr19-3833069-2	chr19	3832633	3833633	+	796.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18640.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	6.86	4.15	5.55	8.1	1.4	4.82	5.28	5.31	6.87
Merged-chr12-4536710-3	chr12	4536218	4537218	+	796.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12605.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	5.15	13.36	10.17	14.17	7.46	17.68	6.34	10.61	14.36
Merged-chr2-91498435-3	chr2	91497934	91498934	+	796.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172668, exon 31 of 38)	exon (NM_172668, exon 31 of 38)	-28328.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	30.89	28.57	32.37	34.41	14.93	20.9	198.56	209.59	113.04
Merged-chr1-88239481-1	chr1	88238981	88239981	+	796.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 15 of 41)	intron (NM_001281466, intron 15 of 41)	12461.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	8.01	9.68	11.1	4.05	11.66	20.09	7.39	5.75	14.36
Merged-chr9-95783829-2	chr9	95783327	95784327	+	796.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033210, intron 5 of 15)	intron (NM_001033210, intron 5 of 15)	-33469.0	NM_011643	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	5.15	0.92	3.7	11.47	3.73	3.22	1.06	1.77	1.25
Merged-chr13-58158326-2	chr13	58157830	58158830	+	796.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198004, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	681.0	NM_198004	75731.0	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	106.4	122.57	110.99	97.83	67.18	94.85	137.3	107.89	77.44
Merged-chr5-130139566-3	chr5	130139068	130140068	+	796.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5320.0	NM_172509	212919.0	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	14.87	6.45	0.0	12.14	5.13	5.63	2.11	3.1	8.74
Merged-chr2-83767139-3	chr2	83766646	83767646	+	796.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008402, intron 8 of 29)	intron (NM_008402, intron 8 of 29)	42749.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	11.44	10.14	13.87	10.12	7.0	13.66	16.9	10.61	10.62
Merged-chr4-155221799-5	chr4	155221260	155222260	+	796.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	775.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	47.48	59.44	42.55	59.38	49.92	64.3	63.37	39.8	31.85
Merged-chr12-54969252-2	chr12	54968735	54969735	+	796.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013815, intron 3 of 26)	intron (NM_013815, intron 3 of 26)	17101.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	10.87	8.75	25.9	10.8	7.0	11.25	24.29	24.76	9.99
Merged-chr1-62706487-3	chr1	62705961	62706961	+	796.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	CpG	3144.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	16.02	15.21	7.4	8.77	3.27	6.43	3.17	4.86	3.75
Merged-chr18-80119077-3	chr18	80118567	80119567	+	796.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_053117, exon 3 of 3)	3' UTR (NM_053117, exon 3 of 3)	32415.0	NM_175028	240442.0	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	2.29	3.23	1.85	2.02	0.47	1.61	3.17	4.42	0.62
Merged-chr5-140768536-2	chr5	140768041	140769041	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	intron (NM_010302, intron 2 of 3)	44414.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	61.21	62.67	51.8	64.1	65.78	78.77	44.36	45.54	40.59
Merged-chr14-20737435-3	chr14	20736931	20737931	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039138, exon 19 of 20)	exon (NM_001039138, exon 19 of 20)	-2869.0	NM_010811	17423.0	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	5.72	5.07	10.17	7.42	3.27	4.82	3.17	3.54	2.5
Merged-chr6-54954824-2	chr6	54954337	54955337	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	16824.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	29.75	23.04	22.2	26.31	19.13	15.27	147.87	172.0	124.28
Merged-chr13-54828785-1	chr13	54828285	54829285	+	796.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39380.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	4.0	6.91	7.4	5.4	2.33	8.84	16.9	38.47	26.85
Merged-chr15-74934301-2	chr15	74933782	74934782	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR48B|LTR|ERV1	-20769.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	12.01	5.07	12.02	6.07	9.8	7.23	123.57	134.86	68.7
Merged-chr2-153076032-2	chr2	153075538	153076538	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145536, intron 6 of 8)	intron (NM_145536, intron 6 of 8)	10083.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	27.46	19.81	17.57	27.66	9.33	16.08	26.4	32.28	26.23
Merged-chr16-67620998-2	chr16	67620507	67621507	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145977)	promoter-TSS (NM_001145977)	-99.0	NM_178721	239857.0	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	2.29	2.3	1.85	2.7	0.47	0.0	1.06	0.0	6.25
Merged-chr14-51087889-2	chr14	51087382	51088382	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3195.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	50.34	58.52	15.72	45.88	35.92	11.25	19.01	18.13	6.25
Merged-chr9-25585822-1	chr9	25585322	25586322	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 4 of 7)	intron (NM_026189, intron 4 of 7)	104225.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	6.86	1.38	1.85	5.4	6.06	3.22	7.39	8.4	2.5
Merged-chr10-44596186-2	chr10	44595719	44596719	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-137471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	11.44	14.28	10.17	18.22	11.2	8.04	15.84	11.94	18.74
Merged-chr14-79553013-2	chr14	79552535	79553535	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	L1_Mur2|LINE|L1	-34625.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	22.88	24.42	16.65	14.84	14.93	9.65	16.9	21.67	14.99
Merged-chr4-109550777-1	chr4	109550277	109551277	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19480.0	NM_026291	67646.0	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	28.6	15.21	27.75	18.89	14.46	16.88	13.73	10.17	13.12
Merged-chr13-52962605-1	chr13	52962105	52963105	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	18434.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	6.29	6.91	8.32	10.8	7.93	12.06	17.96	8.84	6.25
Merged-chr6-125127987-2	chr6	125127495	125128495	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346610, intron 37 of 38)	intron (NM_001346610, intron 37 of 38)	-3888.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	9.72	17.05	23.12	10.12	8.86	16.88	17.96	31.84	16.24
Merged-chr17-5541369-1	chr17	5540869	5541869	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	48769.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	6.86	16.59	9.25	18.22	5.13	12.86	9.51	6.63	4.37
Merged-chr19-53516452-1	chr19	53515952	53516952	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12866.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	5.15	1.84	9.25	3.37	5.6	9.65	0.0	4.42	5.0
Merged-chr12-74804285-2	chr12	74803777	74804777	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	373055.0	NM_172805	238271.0	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.57	1.38	1.85	4.72	4.67	3.22	2.11	0.44	3.12
Merged-chr11-32542375-1	chr11	32541875	32542875	+	796.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	9109.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	140.73	132.71	130.42	161.93	147.42	219.43	160.54	180.85	88.68
Merged-chr1-44180607-2	chr1	44180106	44181106	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011729, exon 15 of 15)	exon (NM_011729, exon 15 of 15)	32862.0	NM_011729	22592.0	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	13.73	11.06	10.17	8.77	7.93	9.65	8.45	11.5	3.75
Merged-chr9-108404605-2	chr9	108404104	108405104	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001135198, exon 7 of 7)	3' UTR (NM_001135198, exon 7 of 7)	11770.0	NM_053216	112418.0	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	5.15	7.37	1.85	3.37	3.27	11.25	1.06	5.31	3.75
Merged-chr19-41992777-2	chr19	41992292	41993292	+	796.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	11029.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	62.93	59.44	42.55	36.43	31.72	27.33	55.98	55.71	23.73
Merged-chr3-89437575-3	chr3	89437065	89438065	+	796.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	861.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	8.01	8.29	15.72	7.42	8.86	4.82	7.39	5.31	8.12
Merged-chr5-115235497-2	chr5	115235041	115236041	+	796.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026398)	promoter-TSS (NM_026398)	-310.0	NM_026398	117109.0	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	12.59	10.14	1.85	38.46	29.39	32.96	20.07	11.94	14.36
Merged-chr16-8823343-2	chr16	8822843	8823843	+	796.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6757.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.72	11.06	11.1	10.12	7.93	10.45	11.62	12.82	18.11
Merged-chr12-73554339-3	chr12	73553822	73554822	+	796.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5839.0	NR_044985	73644.0	Mm.369885	NR_044985	ENSMUSG00000113800	2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	3.43	0.92	0.0	4.05	1.4	1.61	0.0	2.21	1.87
Merged-chr7-100150597-3	chr7	100150146	100151146	+	796.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8631.0	NM_026010	67164.0	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	147.59	118.88	105.44	179.47	143.22	118.96	175.33	182.62	103.05
Merged-chr6-88048001-3	chr6	88047497	88048497	+	796.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2727.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	26.89	17.51	20.35	18.89	6.53	19.29	20.07	12.82	13.74
Merged-chr15-99456556-3	chr15	99456042	99457042	+	796.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	1206.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	30.32	24.42	24.97	30.36	18.66	40.19	22.18	19.01	23.73
Merged-chr5-100559554-3	chr5	100559051	100560051	+	796.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 3 of 4)	intron (NM_139198, intron 3 of 4)	12654.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	11.44	8.75	12.95	18.89	6.53	4.82	33.8	28.74	11.24
Merged-chr7-25811615-2	chr7	25811113	25812113	+	796.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028775, exon 3 of 9)	exon (NM_028775, exon 3 of 9)	4917.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	8.58	3.69	1.85	3.37	1.87	8.84	6.34	2.21	5.62
Merged-chr16-96345327-3	chr16	96344777	96345777	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16480.0	NM_001177887	72058.0	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	1.14	0.46	3.7	7.42	2.8	0.8	2.11	3.98	3.75
Merged-chr14-51082807-3	chr14	51082246	51083246	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8331.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	97.25	95.84	74.0	97.83	89.1	56.27	84.49	43.77	21.23
Merged-chr11-117718967-1	chr11	117718467	117719467	+	796.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 4 of 21)	intron (NM_198022, intron 4 of 21)	60681.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	16.02	7.83	20.35	21.59	13.53	9.65	15.84	14.15	12.49
Merged-chr13-44231302-3	chr13	44230799	44231799	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14812.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.15	5.53	5.55	11.47	6.53	6.43	7.39	3.98	0.0
Merged-chr11-43352731-1	chr11	43352231	43353231	+	796.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	21730.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	187.06	198.14	102.67	169.35	158.15	155.13	123.57	196.32	99.92
Merged-chr1-180261973-3	chr1	180261467	180262467	+	796.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5667.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	50.34	45.16	34.22	45.21	28.92	21.7	66.54	38.47	49.96
Merged-chr13-37826313-5	chr13	37825899	37826899	+	796.330017	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033615)	promoter-TSS (NR_033615)	361.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	64.07	56.22	76.77	89.06	70.91	107.71	91.89	78.71	34.35
Merged-chr16-91534677-3	chr16	91534178	91535178	+	796.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	1.14	1.84	2.77	4.05	1.4	1.61	1.06	1.33	1.87
Merged-chr1-176996954-3	chr1	176996459	176997459	+	796.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 17 of 18)	intron (NM_001357390, intron 17 of 18)	-160826.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	16.59	8.75	22.2	23.62	13.53	6.43	17.96	15.48	6.25
Merged-chr19-3685958-3	chr19	3685449	3686449	+	796.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008513, intron 1 of 22)	CpG	615.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	120.7	153.9	151.69	101.88	135.75	138.25	148.92	141.05	77.44
Merged-chr17-70119019-2	chr17	70118519	70119519	+	796.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 2 of 14)	intron (NM_001347411, intron 2 of 14)	149946.0	NM_001347411	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	6.29	9.68	7.4	15.52	14.93	10.45	5.28	2.65	5.62
Merged-chr9-25076219-2	chr9	25075716	25076716	+	796.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75565.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	2.29	4.15	7.4	6.75	4.2	4.02	2.11	2.65	3.75
Merged-chr12-116449751-2	chr12	116449255	116450255	+	796.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 26 of 28)	MTD|LTR|ERVL-MaLR	-35965.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	9.72	3.69	16.65	2.02	4.2	4.82	24.29	27.41	13.12
Merged-chr11-4596824-3	chr11	4596318	4597318	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2003.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	21.17	32.25	33.3	35.76	25.19	25.72	36.97	32.28	28.1
Merged-chr12-103338988-3	chr12	103338467	103339467	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	ORR1G|LTR|ERVL-MaLR	17034.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	97.82	99.53	110.99	83.66	47.58	30.54	114.07	105.68	34.97
Merged-chr1-64485507-3	chr1	64484993	64485993	+	796.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-47311.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	20.02	10.6	12.95	16.87	14.46	6.43	47.53	22.99	9.99
Merged-chr14-26639415-3	chr14	26638935	26639935	+	796.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	1301.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	184.2	241.45	132.27	155.86	174.94	106.1	176.38	244.96	121.16
Merged-chr19-10603033-2	chr19	10602525	10603525	+	796.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145496, intron 1 of 16)	intron (NM_145496, intron 1 of 16)	1233.0	NM_145496	225913.0	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	14.87	22.12	11.1	20.24	22.39	36.97	20.07	18.57	12.49
Merged-chr3-88396030-3	chr3	88395513	88396513	+	796.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025928, exon 4 of 5)	exon (NM_025928, exon 4 of 5)	-11547.0	NM_007541	12096.0	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	8.01	4.61	11.1	8.1	5.13	11.25	21.12	16.8	21.23
Merged-chr17-45953741-2	chr17	45953242	45954242	+	796.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71421.0	NM_001110267	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	1.72	2.3	7.4	1.35	0.47	3.22	4.22	5.31	3.75
Merged-chr3-109047907-2	chr3	109047384	109048384	+	796.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-20277.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	2.86	1.38	1.85	8.1	2.33	3.22	4.22	3.54	1.25
Merged-chr14-63146447-2	chr14	63145939	63146939	+	796.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007798)	TTS (NM_007798)	23977.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	19.45	24.42	17.57	23.62	27.06	36.17	17.96	23.88	17.49
Merged-chr3-130878972-3	chr3	130878480	130879480	+	796.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148582.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	5.72	8.29	5.55	5.4	7.0	8.84	9.51	3.54	1.25
Merged-chr5-124353820-3	chr5	124353300	124354300	+	796.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	CpG	828.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	46.34	21.2	32.37	37.78	13.53	38.58	44.36	11.05	21.23
Merged-chr14-45231466-4	chr14	45230995	45231995	+	796.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027518, intron 1 of 6)	intron (NM_027518, intron 1 of 6)	11778.0	NM_027518	70713.0	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	40.62	46.08	20.35	24.96	34.06	42.6	55.98	57.92	45.59
Merged-chr13-58117855-3	chr13	58117365	58118365	+	796.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	7.44	6.91	8.32	7.42	6.06	9.65	6.34	11.05	7.49
Merged-chr13-12047254-2	chr13	12046732	12047732	+	796.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	59713.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	4.0	5.99	1.85	6.75	2.8	6.43	2.11	4.86	6.87
Merged-chr9-49483620-2	chr9	49483123	49484123	+	796.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	2602.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	19.45	11.52	7.4	44.53	17.73	39.39	3.17	0.88	1.25
Merged-chr13-6062457-3	chr13	6061976	6062976	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	200987.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	7.44	15.67	3.7	12.14	6.06	16.08	9.51	4.42	11.24
Merged-chr19-45032756-3	chr19	45032272	45033272	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	L2b|LINE|L2	13000.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	4.0	4.61	0.92	8.1	2.33	1.61	3.17	0.44	6.25
Merged-chr18-36678572-3	chr18	36678057	36679057	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001083317)	promoter-TSS (NM_001083317)	-658.0	NM_001360989	67843.0	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	191.64	182.47	145.22	218.61	181.47	164.78	171.1	211.36	91.81
Merged-chr8-56063374-3	chr8	56062887	56063887	+	796.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	122562.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	4.0	16.59	13.87	9.45	8.4	14.47	21.12	10.61	15.61
Merged-chr10-93487140-3	chr10	93486651	93487651	+	796.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1617.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	22.88	21.2	21.27	56.68	39.19	25.72	12.67	8.84	1.25
Merged-chr7-122396150-1	chr7	122395650	122396650	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	107025.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	22.31	13.36	26.82	22.27	14.46	19.29	19.01	9.73	24.98
Merged-chr4-43975103-3	chr4	43974622	43975622	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027450, intron 4 of 4)	intron (NM_027450, intron 4 of 4)	-8382.0	NM_001002787	442829.0	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	29.75	13.82	9.25	19.57	6.06	6.43	7.39	7.52	11.24
Merged-chr19-3699934-1	chr19	3699434	3700434	+	796.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8359.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	21.74	18.43	24.05	18.22	10.26	17.68	15.84	12.38	11.87
Merged-chr8-128652444-1	chr8	128651944	128652944	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33210.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	8.01	14.75	6.47	10.12	13.06	5.63	9.51	10.61	6.25
Merged-chr12-87393572-3	chr12	87393075	87394075	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5220.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	8.01	23.96	19.42	12.82	23.33	27.33	17.96	16.8	23.73
Merged-chr1-176074732-1	chr1	176074232	176075232	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 2 of 8)	intron (NM_001357846, intron 2 of 8)	139210.0	NM_001357845	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	36.61	57.14	28.67	31.04	36.85	17.68	39.08	42.45	18.74
Merged-chr4-53210875-1	chr4	53210375	53211375	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35321.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	5.72	3.69	3.7	8.77	4.2	8.04	6.34	2.65	5.0
Merged-chr19-54115098-1	chr19	54114598	54115598	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69916.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	5.15	3.69	7.4	5.4	3.27	1.61	0.0	0.44	5.62
Merged-chr6-15464548-1	chr6	15464048	15465048	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON9|Unknown|Unknown	-256113.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.29	7.37	3.7	8.1	10.73	7.23	10.56	3.1	10.62
Merged-chr15-61994081-1	chr15	61993581	61994581	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8740.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	7.44	9.68	14.8	6.07	8.4	8.04	4.22	4.42	11.87
Merged-chr15-76868868-1	chr15	76868368	76869368	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007568, intron 3 of 3)	intron (NM_001007568, intron 3 of 3)	2567.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	1.72	5.53	6.47	10.8	9.8	3.22	6.34	7.07	5.0
Merged-chr4-101169962-2	chr4	101169448	101170448	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 11 of 24)	intron (NM_146145, intron 11 of 24)	95334.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	17.73	27.65	12.95	15.52	25.66	24.11	16.9	21.67	18.74
Merged-chr10-30654441-1	chr10	30653941	30654941	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001358841, exon 12 of 16)	exon (NM_001358841, exon 12 of 16)	1426.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	17.16	16.13	26.82	16.87	16.79	25.72	16.9	22.11	31.85
Merged-chr12-35049252-2	chr12	35048752	35049752	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	2063.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	112.69	162.66	84.17	126.17	110.1	80.38	125.69	180.4	68.07
Merged-chr3-79569367-1	chr3	79568867	79569867	+	796.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152118, intron 1 of 1)	intron (NR_152118, intron 1 of 1)	1175.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	17.73	13.82	11.1	5.4	7.46	17.68	21.12	8.84	14.99
Merged-chr4-44020195-1	chr4	44019695	44020695	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080384, intron 4 of 5)	intron (NM_001080384, intron 4 of 5)	7545.0	NM_001290470	12757.0	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	19.45	19.81	14.8	18.89	14.93	32.96	14.79	10.17	14.36
Merged-chr11-6497372-1	chr11	6496872	6497872	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21296.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	88.67	100.45	53.65	2.02	0.47	1.61	11.62	24.32	16.86
Merged-chr13-8709271-2	chr13	8708780	8709780	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 6 of 10)	intron (NR_110345, intron 6 of 10)	161764.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.43	3.23	0.0	8.77	3.73	12.86	1.06	7.52	6.25
Merged-chr14-25842545-1	chr14	25842045	25843045	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	CpG	390.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	113.27	116.58	40.7	163.28	166.08	95.65	125.69	116.73	39.35
Merged-chr1-135280834-1	chr1	135280334	135281334	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159624, intron 1 of 9)	MLTR31A_MM|LTR|ERVK	3250.0	NM_145417	215615.0	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	12.01	15.21	13.87	15.52	10.73	13.66	23.24	11.94	7.49
Merged-chr4-43474504-1	chr4	43474004	43475004	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9205.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	18.88	26.73	50.87	21.59	27.52	28.94	27.46	20.34	33.72
Merged-chr3-116163752-1	chr3	116163252	116164252	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34064.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	17.73	23.96	14.8	25.64	27.99	24.11	22.18	28.74	14.99
Merged-chr13-109736905-2	chr13	109736408	109737408	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-166901.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	2.29	1.38	1.85	2.02	1.4	1.61	4.22	3.54	6.25
Merged-chr18-5296188-1	chr18	5295688	5296688	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360447, intron 1 of 4)	intron (NM_001360447, intron 1 of 4)	38251.0	NM_178722	240186.0	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	4.0	3.23	9.25	4.05	6.53	9.65	9.51	3.1	1.87
Merged-chr18-40439852-2	chr18	40439347	40440347	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	181486.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	2.29	0.92	1.85	2.02	2.8	1.61	7.39	15.92	9.99
Merged-chr6-72186163-1	chr6	72185663	72186663	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	49414.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	4.0	0.46	3.7	4.72	0.93	3.22	4.22	2.65	0.62
Merged-chr4-56026838-1	chr4	56026338	56027338	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-494363.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	1.14	3.23	0.0	3.37	3.27	1.61	1.06	5.31	2.5
Merged-chr6-4983426-1	chr6	4982926	4983926	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	80106.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	11.44	9.68	12.02	6.75	4.67	10.45	10.56	2.21	6.25
Merged-chr14-98401597-1	chr14	98401097	98402097	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231832.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	3.43	1.84	3.7	6.07	5.6	1.61	5.28	0.0	3.75
Merged-chr13-29431103-2	chr13	29430617	29431617	+	796.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	414862.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	5.72	5.53	3.7	2.02	2.33	1.61	3.17	3.54	1.25
Merged-chr14-19747901-1	chr14	19747401	19748401	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3356.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	4.58	3.69	7.4	8.77	4.2	11.25	2.11	0.44	0.0
Merged-chr3-69179895-1	chr3	69179395	69180395	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-42524.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	13.16	8.29	11.1	15.52	12.13	6.43	6.34	4.86	2.5
Merged-chr2-3714001-1	chr2	3713501	3714501	+	796.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	543.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	113.27	116.58	78.62	90.41	82.57	60.28	77.1	75.17	60.58
Merged-chr10-26890767-3	chr10	26890261	26891261	+	795.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176837, intron 12 of 14)	intron (NM_176837, intron 12 of 14)	118249.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	2.86	3.69	5.55	0.67	1.4	1.61	1.06	1.33	2.5
Merged-chr3-37659990-2	chr3	37659481	37660481	+	795.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20034.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	6.86	9.22	1.85	5.4	8.4	4.82	5.28	4.86	1.87
Merged-chr9-71129143-3	chr9	71128652	71129652	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 4 of 6)	B3|SINE|B2	33481.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	2.86	1.84	6.47	8.1	0.47	2.41	8.45	0.0	1.25
Merged-chr15-64089433-3	chr15	64088926	64089926	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276462, exon 28 of 28)	3' UTR (NM_001276462, exon 28 of 28)	-28978.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	100.11	79.25	92.5	95.81	79.77	115.75	69.71	80.92	48.09
Merged-chr11-63230966-3	chr11	63230466	63231466	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	98163.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	7.44	12.44	3.7	5.4	6.53	6.43	11.62	5.75	3.75
Merged-chr16-76610552-3	chr16	76610034	76611034	+	795.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61739.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	8.58	17.05	7.4	10.8	10.26	15.27	15.84	8.84	8.74
Merged-chr5-101753830-3	chr5	101753314	101754314	+	795.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-11316.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.57	5.07	9.25	6.75	2.33	7.23	8.45	5.75	3.75
Merged-chr13-89779491-2	chr13	89778981	89779981	+	795.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36969.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.43	5.99	3.7	12.82	3.27	4.82	4.22	2.21	3.12
Merged-chr3-84853086-1	chr3	84852586	84853586	+	795.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	-11059.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	6.86	4.15	0.0	12.82	10.73	24.92	4.22	5.75	3.75
Merged-chr2-104685592-3	chr2	104685090	104686090	+	795.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177190, intron 7 of 9)	intron (NM_177190, intron 7 of 9)	26572.0	NM_177190	320554.0	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	7.44	2.76	0.0	1.35	2.33	1.61	2.11	3.1	9.99
Merged-chr4-87870761-3	chr4	87870255	87871255	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-64432.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.72	4.61	1.85	2.02	5.13	0.0	13.73	12.38	1.87
Merged-chr3-95986076-3	chr3	95985592	95986592	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045872, intron 2 of 2)	intron (NR_045872, intron 2 of 2)	582.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	104.69	101.83	146.14	123.47	127.36	137.45	135.19	159.62	99.92
Merged-chr5-21692476-3	chr5	21691991	21692991	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359965, intron 1 of 4)	intron (NM_001359965, intron 1 of 4)	8905.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	15.45	2.76	5.55	6.75	7.0	11.25	13.73	8.4	2.5
Merged-chr18-38144835-3	chr18	38144314	38145314	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64948.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	2.86	0.92	0.0	3.37	0.93	3.22	2.11	1.33	2.5
Merged-chr3-65418329-3	chr3	65417827	65418827	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25774.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.0	4.61	0.0	4.05	2.8	1.61	1.06	1.33	2.5
Merged-chr9-110667378-3	chr9	110666869	110667869	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	10866.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	17.16	17.51	17.57	20.92	18.66	17.68	62.31	44.66	24.98
Merged-chr16-94586439-3	chr16	94585937	94586937	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	15530.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	21.17	11.98	12.95	16.19	13.06	20.09	19.01	13.71	7.49
Merged-chr15-73720955-3	chr15	73720469	73721469	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2176.0	NM_001166390	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	5.72	4.61	1.85	0.0	1.4	7.23	5.28	0.88	0.0
Merged-chr13-95325293-3	chr13	95324780	95325780	+	795.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028106, exon 1 of 2)	5' UTR (NM_028106, exon 1 of 2)	455.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	57.78	50.69	21.27	126.17	113.83	61.09	92.94	60.13	31.23
Merged-chr18-12947334-2	chr18	12946827	12947827	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-5486.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	9.15	4.61	3.7	8.1	3.27	0.8	8.45	1.33	5.62
Merged-chr13-81401949-2	chr13	81401457	81402457	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 77 of 89)	MTE2b|LTR|ERVL-MaLR	231187.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	28.03	33.64	39.77	44.53	40.12	45.82	52.81	54.39	27.48
Merged-chr5-139375767-2	chr5	139375249	139376249	+	795.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	MTE2a|LTR|ERVL-MaLR	-1948.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	24.6	17.97	37.0	29.69	15.86	29.74	32.74	37.14	26.85
Merged-chr13-54055689-1	chr13	54055189	54056189	+	795.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010076)	promoter-TSS (NM_010076)	-31.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	6.29	2.3	0.0	0.0	1.87	1.61	4.22	1.33	0.0
Merged-chr10-96416825-3	chr10	96416329	96417329	+	795.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	190622.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	2.29	5.07	11.1	8.1	4.2	1.61	3.17	3.1	3.75
Merged-chr7-126862428-3	chr7	126861945	126862945	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153580)	promoter-TSS (NM_153580)	473.0	NM_172746	233876.0	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	94.39	76.95	47.17	66.8	74.64	73.14	113.01	100.81	56.83
Merged-chr2-66410207-3	chr2	66409707	66410707	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313997, intron 1 of 26)	intron (NM_001313997, intron 1 of 26)	30630.0	NM_018733	20265.0	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	1.72	2.3	0.0	1.35	2.8	0.0	1.06	0.88	0.0
Merged-chr3-41582545-3	chr3	41582055	41583055	+	795.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130184, intron 2 of 10)	intron (NM_001130184, intron 2 of 10)	17675.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	10.87	6.91	11.1	7.42	14.93	9.65	8.45	6.63	9.99
Merged-chr9-105648523-2	chr9	105648012	105649012	+	795.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081309, intron 2 of 19)	intron (NM_001081309, intron 2 of 19)	5517.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	28.03	30.87	32.37	21.59	22.86	25.72	1.06	3.98	2.5
Merged-chr8-10668328-2	chr8	10667826	10668826	+	795.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	214128.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	3.43	1.84	0.0	4.72	3.73	12.86	2.11	1.33	1.25
Merged-chr13-58601453-3	chr13	58600949	58601949	+	795.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	9428.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	11.44	5.07	5.55	6.07	0.93	0.0	6.34	3.98	11.24
Merged-chr6-123095492-6	chr6	123094966	123095966	+	795.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27224.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	38.33	40.09	21.27	41.83	43.85	54.66	33.8	18.13	37.47
Merged-chr6-115480131-3	chr6	115479625	115480625	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	58059.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	143.01	187.08	121.17	141.69	129.69	154.33	134.14	139.28	95.55
Merged-chr7-63912609-3	chr7	63912123	63913123	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-4234.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	191.07	168.19	119.32	164.63	118.49	150.31	190.11	215.78	105.55
Merged-chr13-25854651-3	chr13	25854160	25855160	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	111656.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	1.72	0.92	3.7	2.7	3.73	1.61	2.11	1.77	0.0
Merged-chr8-11215413-3	chr8	11214908	11215908	+	795.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009931, intron 40 of 51)	intron (NM_009931, intron 40 of 51)	-97397.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	5.15	1.84	6.47	2.02	0.93	0.0	2.11	2.65	2.5
Merged-chr5-136085540-2	chr5	136085040	136086040	+	795.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	1624.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	226.53	143.3	177.59	205.11	146.95	134.23	297.84	236.12	150.51
Merged-chr5-150155641-2	chr5	150155148	150156148	+	795.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104282.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	6.86	7.83	3.7	6.07	8.4	8.84	10.56	6.63	1.25
Merged-chr12-70156256-2	chr12	70155779	70156779	+	795.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195033, intron 1 of 12)	intron (NM_001195033, intron 1 of 12)	2108.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	10.87	5.53	9.25	5.4	7.93	10.45	2.11	5.75	7.49
Merged-chr2-75965192-3	chr2	75964710	75965710	+	795.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12969.0	NM_001081228	620631.0	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	-	tetratricopeptide repeat domain 30A2	protein-coding	11.44	5.99	7.4	11.47	12.13	3.22	11.62	12.38	8.74
Merged-chr3-127527774-3	chr3	127527290	127528290	+	795.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17299.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	5.72	5.53	11.1	5.4	5.13	3.22	65.48	67.65	34.35
Merged-chr9-75038109-3	chr9	75037622	75038622	+	795.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152135, intron 2 of 4)	CpG	390.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	40.04	44.7	32.37	58.03	34.06	32.96	45.42	27.86	25.61
Merged-chr15-4821385-2	chr15	4820877	4821877	+	795.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-77360.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	19.45	20.74	28.67	35.76	14.93	24.92	26.4	26.97	22.48
Merged-chr18-56989681-3	chr18	56989194	56990194	+	795.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14315.0	NM_029909	77422.0	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	9.72	7.37	3.7	5.4	6.53	3.22	4.22	2.65	4.37
Merged-chr9-85693358-3	chr9	85692882	85693882	+	795.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175371, intron 25 of 27)	intron (NM_175371, intron 25 of 27)	55952.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	8.01	9.22	9.25	5.4	9.33	13.66	12.67	6.63	7.49
Merged-chr6-34629192-3	chr6	34628701	34629701	+	795.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	30697.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	1.14	5.07	5.55	4.05	2.8	6.43	5.28	5.31	8.74
Merged-chr11-26201085-2	chr11	26200566	26201566	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-1174.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	4.58	3.23	0.0	2.7	0.0	6.43	6.34	1.77	8.74
Merged-chrX-20829109-2	chrX	20828613	20829613	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19430.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	4.58	6.45	3.7	4.05	5.13	1.61	3.17	0.0	0.0
Merged-chr7-92630374-1	chr7	92629874	92630874	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028665, intron 2 of 11)	intron (NM_028665, intron 2 of 11)	6768.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	3.43	2.3	0.0	0.67	2.33	0.0	2.11	2.21	5.0
Merged-chr6-49012409-2	chr6	49011887	49012887	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12771.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	10.3	6.45	9.25	9.45	7.46	18.49	27.46	9.73	11.87
Merged-chr2-155363626-1	chr2	155363126	155364126	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-6202.0	NM_001004721	228812.0	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	3.43	12.9	10.17	7.42	8.86	11.25	11.62	7.07	12.49
Merged-chr14-98929514-1	chr14	98929014	98930014	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	116622.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	2.29	2.76	1.85	0.0	6.06	6.43	3.17	3.54	6.87
Merged-chr12-36521953-2	chr12	36521453	36522453	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289503, intron 7 of 9)	intron (NM_001289503, intron 7 of 9)	106337.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	4.58	5.53	0.0	2.7	5.6	1.61	2.11	6.19	8.74
Merged-chr11-51328728-3	chr11	51328221	51329221	+	795.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	38801.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.0	9.68	1.85	3.37	7.0	4.82	6.34	4.42	1.25
Merged-chr7-44816814-2	chr7	44816365	44817365	+	795.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033136)	promoter-TSS (NR_033136)	-207.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	80.66	78.33	71.22	49.25	48.98	59.48	72.88	74.28	37.47
Merged-chr4-123423079-2	chr4	123422575	123423575	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 52 of 92)	intron (NM_001199137, intron 52 of 92)	-11164.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	12.59	10.14	14.8	18.89	18.66	23.31	66.54	61.02	30.6
Merged-chr9-113704942-1	chr9	113704442	113705442	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164678, intron 1 of 17)	intron (NM_001164678, intron 1 of 17)	3317.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	14.3	10.6	18.5	6.75	8.86	8.84	25.35	4.86	17.49
Merged-chr6-115485849-1	chr6	115485349	115486349	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308354, intron 7 of 7)	intron (NM_001308354, intron 7 of 7)	-58855.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	22.88	17.97	16.65	10.8	10.26	8.84	9.51	8.4	11.24
Merged-chr2-103934841-2	chr2	103934344	103935344	+	795.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23151.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	7.44	10.6	11.1	8.1	7.93	4.82	11.62	11.5	7.49
Merged-chr4-57028152-3	chr4	57027670	57028670	+	795.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355492, intron 18 of 24)	intron (NM_001355492, intron 18 of 24)	-37779.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	29.75	30.87	5.55	43.18	30.32	16.08	5.28	3.98	6.25
Merged-chr12-41300488-2	chr12	41299987	41300987	+	795.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	185570.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	10.87	14.28	12.95	6.07	9.8	12.86	4.22	4.86	3.12
Merged-chr5-117396627-3	chr5	117396128	117397128	+	795.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7605.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	13.16	15.67	9.25	16.87	10.73	16.08	6.34	3.98	7.49
Merged-chr11-108104613-3	chr11	108104126	108105126	+	795.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	MTD|LTR|ERVL-MaLR	107778.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	9.72	13.36	3.7	21.59	10.73	8.04	13.73	11.05	6.25
Merged-chr4-149650676-3	chr4	149650166	149651166	+	795.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164052, exon 22 of 22)	exon (NM_001164052, exon 22 of 22)	4901.0	NR_105990	102465983.0		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	11.44	5.07	4.62	6.75	7.46	8.04	6.34	3.54	7.49
Merged-chr6-86447235-3	chr6	86446740	86447740	+	795.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243741, intron 3 of 9)	intron (NM_001243741, intron 3 of 9)	8594.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	17.16	28.57	33.3	32.39	20.53	43.4	36.97	21.22	29.98
Merged-chr4-148114955-3	chr4	148114442	148115442	+	795.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027426, intron 2 of 6)	intron (NM_027426, intron 2 of 6)	15756.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	4.0	3.69	1.85	0.67	1.4	0.0	3.17	2.21	0.0
Merged-chr12-105731175-1	chr12	105730675	105731675	+	795.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030187, intron 5 of 17)	intron (NM_030187, intron 5 of 17)	25193.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	10.3	14.28	8.32	8.1	7.46	12.06	16.9	14.15	7.49
Merged-chr11-86356702-3	chr11	86356202	86357202	+	795.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080931, intron 1 of 29)	intron (NM_001080931, intron 1 of 29)	823.0	NM_001080931	327987.0	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	105.26	162.66	122.09	165.98	143.22	127.0	186.94	218.87	90.56
Merged-chr11-11557849-3	chr11	11557332	11558332	+	795.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68566.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	13.73	13.82	8.32	18.89	14.0	16.88	16.9	18.57	11.87
Merged-chr12-85420986-3	chr12	85420523	85421523	+	795.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46306.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	8.58	5.07	12.02	10.12	5.6	8.84	6.34	3.1	12.49
Merged-chr16-30775502-5	chr16	30775008	30776008	+	795.34668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175785.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	56.63	52.07	85.1	108.63	61.58	63.5	110.9	132.21	84.94
Merged-chr9-45312015-2	chr9	45311509	45312509	+	795.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7091.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	6.86	4.15	1.85	13.49	5.13	6.43	5.28	8.4	3.75
Merged-chr7-97034391-2	chr7	97033887	97034887	+	795.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 9 of 13)	L2a|LINE|L2	-47364.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	8.58	10.6	11.1	8.77	15.86	6.43	10.56	9.29	9.99
Merged-chr2-127273962-2	chr2	127273450	127274450	+	795.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139308, intron 1 of 7)	(TG)n|Simple_repeat|Simple_repeat	3721.0	NM_139308	99138.0	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	22.31	24.42	40.7	18.22	14.0	33.76	51.75	40.24	41.84
Merged-chr2-180966217-2	chr2	180965716	180966716	+	795.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-1009.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	24.03	23.04	20.35	9.45	15.86	7.23	21.12	20.34	5.62
Merged-chr1-9813111-1	chr1	9812611	9813611	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	14981.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	14.3	11.06	24.05	13.49	6.53	20.9	20.07	14.15	11.24
Merged-chr10-82793795-1	chr10	82793295	82794295	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16B|LTR|ERVL	-18328.0	NR_038042	70003.0	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	3.43	4.61	5.55	4.05	1.87	0.0	2.11	4.86	3.75
Merged-chr10-44590213-1	chr10	44589713	44590713	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131465.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	55.49	91.24	82.32	80.97	77.44	106.9	85.55	91.97	89.31
Merged-chr4-139006825-1	chr4	139006325	139007325	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029857, intron 7 of 16)	intron (NM_029857, intron 7 of 16)	33920.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	17.73	7.83	12.95	1.35	0.93	0.8	8.45	5.31	5.0
Merged-chr16-52094895-3	chr16	52094387	52095387	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63338.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.3	5.99	5.55	12.14	6.06	8.04	12.67	11.94	11.24
Merged-chr2-14056005-5	chr2	14055458	14056458	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013935)	promoter-TSS (NM_013935)	77.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	12.59	5.99	3.7	12.82	12.6	21.7	10.56	6.19	2.5
Merged-chr6-38352648-3	chr6	38352149	38353149	+	795.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	PB1|SINE|Alu	1954.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	88.1	83.4	68.45	85.69	82.57	41.8	126.74	95.95	73.69
Merged-chr8-78889859-1	chr8	78889359	78890359	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68707.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	5.72	5.53	1.85	4.05	1.87	0.0	3.17	2.21	6.25
Merged-chr16-55755667-1	chr16	55755167	55756167	+	795.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66471.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	39.47	53.45	47.17	39.13	23.33	30.54	50.7	66.77	61.83
Merged-chr11-69060965-4	chr11	69060410	69061410	+	795.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028005, exon 1 of 1)	3' UTR (NM_028005, exon 1 of 1)	1135.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	72.65	66.81	83.25	67.47	41.99	73.14	46.47	77.38	86.81
Merged-chr7-19692699-3	chr7	19692208	19693208	+	795.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007469)	promoter-TSS (NM_007469)	-49.0	NM_007469	11812.0	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	77.8	108.75	97.12	155.86	128.76	188.89	266.16	381.15	122.41
Merged-chr11-48833842-3	chr11	48833305	48834305	+	795.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	-3666.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	78.37	79.72	31.45	59.38	71.84	44.21	65.48	71.63	61.2
Merged-chr11-9388666-2	chr11	9388160	9389160	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 31 of 61)	intron (NM_178259, intron 31 of 61)	196718.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.43	7.37	14.8	2.7	7.46	1.61	4.22	8.4	6.25
Merged-chr2-71328997-2	chr2	71328502	71329502	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 4 of 17)	intron (NM_172436, intron 4 of 17)	38552.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	18.31	25.8	24.05	54.65	16.79	31.35	43.3	44.66	32.48
Merged-chr10-45000959-3	chr10	45000385	45001385	+	795.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66329.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	34.32	34.56	24.05	41.83	35.92	55.46	55.98	50.41	26.23
Merged-chr15-78580547-2	chr15	78580046	78581046	+	795.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155437, intron 1 of 1)	intron (NR_155437, intron 1 of 1)	1043.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	65.79	52.99	63.82	53.3	37.32	71.54	53.87	45.1	33.72
Merged-chr6-145835560-1	chr6	145835060	145836060	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27177.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.29	2.3	1.85	2.7	0.47	10.45	2.11	0.0	5.0
Merged-chr15-65108795-1	chr15	65108295	65109295	+	795.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186499.0	NM_009623	11514.0	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	3.43	4.61	7.4	9.45	7.93	8.04	4.22	3.54	5.0
Merged-chr15-13370053-3	chr15	13369559	13370559	+	795.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196384.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.57	12.44	3.7	6.75	7.46	10.45	10.56	15.03	11.24
Merged-chr17-83271631-3	chr17	83271098	83272098	+	795.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	56315.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	5.15	5.07	4.62	4.72	1.4	5.63	7.39	3.54	8.74
Merged-chr9-61431989-2	chr9	61431495	61432495	+	795.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59629.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	5.15	5.53	4.62	11.47	2.33	1.61	2.11	3.54	0.62
Merged-chr3-95662856-6	chr3	95662524	95663524	+	795.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	4303.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	116.13	122.11	73.07	95.81	64.84	68.32	128.85	152.99	80.56
Merged-chr5-121382914-3	chr5	121382403	121383403	+	795.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359947, intron 2 of 11)	intron (NM_001359947, intron 2 of 11)	2506.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	68.65	53.45	29.6	68.82	50.38	39.39	52.81	65.88	35.6
Merged-chr7-143625287-3	chr7	143624770	143625770	+	795.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175649, intron 1 of 7)	RMER4A|LTR|ERVK	2575.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	37.18	42.85	23.12	30.36	30.32	19.29	17.96	23.43	14.99
Merged-chr2-166083631-2	chr2	166083127	166084127	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 10 of 20)	intron (NM_001252579, intron 10 of 20)	71658.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.58	2.3	0.0	4.72	1.87	3.22	0.0	1.77	3.12
Merged-chr11-77239870-2	chr11	77239363	77240363	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	23438.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	5.72	1.84	0.0	10.12	3.27	3.22	3.17	4.42	0.0
Merged-chr8-94857974-2	chr8	94857491	94858491	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009090, intron 2 of 8)	CpG-14378	541.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	152.17	106.44	57.35	155.86	137.62	80.38	173.21	137.07	56.21
Merged-chr2-181931258-2	chr2	181930763	181931763	+	795.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	-59963.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	8.58	9.22	3.7	18.89	21.93	3.22	9.51	12.82	0.0
Merged-chr6-124919839-3	chr6	124919331	124920331	+	795.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152158, intron 1 of 1)	intron (NR_152158, intron 1 of 1)	-1885.0	NM_026988	69202.0	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	12.01	7.37	21.27	9.45	2.33	3.22	8.45	7.52	6.87
Merged-chr4-101641699-2	chr4	101641201	101642201	+	795.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6082.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	10.87	6.45	9.25	2.7	9.8	8.04	7.39	0.88	14.36
Merged-chr5-64811252-2	chr5	64810742	64811742	+	795.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	7719.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	118.42	139.16	125.79	118.08	90.5	125.39	119.35	127.79	98.68
Merged-chr13-111868126-3	chr13	111867577	111868577	+	795.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130345, exon 1 of 3)	non-coding (NR_130345, exon 1 of 3)	141.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	18.31	22.12	12.95	29.01	27.52	19.29	26.4	25.2	13.74
Merged-chr17-26500469-3	chr17	26499950	26500950	+	795.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	8022.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	29.17	17.51	12.95	14.17	9.33	24.11	13.73	16.8	12.49
Merged-chr4-3743429-3	chr4	3742907	3743907	+	795.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 4 of 12)	intron (NM_001111096, intron 4 of 12)	28443.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	116.7	140.08	107.29	136.97	92.37	97.26	123.57	153.87	71.82
Merged-chr9-68969276-2	chr9	68968767	68969767	+	795.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	MTE2b|LTR|ERVL-MaLR	203921.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	8.01	11.06	1.85	2.02	4.67	3.22	6.34	3.98	2.5
Merged-chr1-36617034-3	chr1	36616538	36617538	+	795.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	Lx7|LINE|L1	-23706.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	22.88	17.97	7.4	9.45	7.0	6.43	10.56	7.52	9.99
Merged-chr17-71221678-3	chr17	71221213	71222213	+	795.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	B1F|SINE|Alu	17059.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	12.59	11.52	24.05	24.29	16.79	24.92	15.84	11.5	18.11
Merged-chr17-53594854-3	chr17	53594374	53595374	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190846, intron 1 of 17)	C-rich|Low_complexity|Low_complexity	10748.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	8.58	12.44	21.27	10.12	13.06	34.56	16.9	11.5	22.48
Merged-chr5-124497028-3	chr5	124496521	124497521	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021430, intron 6 of 6)	intron (NM_021430, intron 6 of 6)	13866.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	10.87	9.68	8.32	31.71	8.86	19.29	12.67	13.71	3.75
Merged-chr12-110957203-3	chr12	110956713	110957713	+	795.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175336, intron 18 of 20)	L1MB7|LINE|L1	21405.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	19.45	18.89	44.4	18.89	10.73	33.76	20.07	38.03	24.98
Merged-chr13-17755177-3	chr13	17754666	17755666	+	795.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 5 of 13)	ORR1E|LTR|ERVL-MaLR	7693.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	6.86	8.75	10.17	7.42	5.13	11.25	11.62	5.75	14.99
Merged-chr2-60817502-3	chr2	60816992	60817992	+	795.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	63946.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	57.21	45.62	16.65	54.65	46.65	49.83	67.6	72.52	28.1
Merged-chr16-25050224-1	chr16	25049724	25050724	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9415.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.58	5.07	9.25	6.75	5.6	3.22	7.39	1.77	9.37
Merged-chr10-39386375-2	chr10	39385872	39386872	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122893, intron 1 of 13)	intron (NM_001122893, intron 1 of 13)	16573.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.44	9.22	9.25	16.19	12.13	6.43	4.22	3.54	3.12
Merged-chrX-21690401-1	chrX	21689901	21690901	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24499.0	NM_020049	56774.0	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	16.02	23.96	14.8	23.62	17.73	24.11	15.84	19.01	9.99
Merged-chr6-89580039-1	chr6	89579539	89580539	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 1 of 6)	intron (NM_001167736, intron 1 of 6)	15613.0	NM_025351	66098.0	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	7.44	9.68	4.62	5.4	7.0	9.65	16.9	3.54	14.99
Merged-chr13-114931919-1	chr13	114931419	114932419	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008396, exon 1 of 30)	exon (NM_008396, exon 1 of 30)	181.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	6.86	4.15	1.85	2.02	3.73	1.61	1.06	1.77	3.75
Merged-chr4-138091941-1	chr4	138091441	138092441	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172703, intron 5 of 34)	B1_Mur1|SINE|Alu	46577.0	NR_126429	73563.0	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	5.72	5.53	6.47	2.7	7.0	14.47	22.18	17.69	5.0
Merged-chr12-99564699-3	chr12	99564181	99565181	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136760, intron 1 of 3)	intron (NR_136760, intron 1 of 3)	840.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	28.6	41.01	30.52	26.99	30.32	41.8	46.47	56.16	27.48
Merged-chr13-52651566-2	chr13	52651066	52652066	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54684.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.0	3.69	7.4	2.7	1.87	0.0	0.0	0.0	2.5
Merged-chr12-102423106-1	chr12	102422606	102423606	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	intron (NM_011175, intron 2 of 13)	16707.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.74	28.57	21.27	31.71	36.39	57.87	47.53	31.39	25.61
Merged-chr9-86451825-2	chr9	86451324	86452324	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027394, exon 2 of 10)	exon (NM_027394, exon 2 of 10)	13092.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	4.58	0.92	0.0	4.05	3.73	8.04	5.28	0.44	5.62
Merged-chr1-85591280-1	chr1	85590780	85591780	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030194, intron 4 of 11)	URR1B|DNA|hAT-Charlie	7530.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	13.16	15.67	34.22	24.96	17.26	38.58	1.06	0.0	39.35
Merged-chr12-111593190-1	chr12	111592690	111593690	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	18680.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	36.61	39.63	20.35	17.54	13.06	14.47	14.79	19.46	19.36
Merged-chr3-116638525-1	chr3	116638025	116639025	+	795.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 8 of 11)	intron (NM_008246, intron 8 of 11)	-23938.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	52.63	91.7	65.67	71.52	60.65	79.58	101.39	99.93	79.32
Merged-chr5-66319499-1	chr5	66318999	66319999	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	18166.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	1.72	3.69	2.77	3.37	2.33	0.8	2.11	0.88	0.0
Merged-chr19-45658821-1	chr19	45658321	45659321	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013907, intron 1 of 8)	intron (NM_013907, intron 1 of 8)	1372.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	37.18	37.78	29.6	28.34	36.39	16.88	33.8	29.63	15.61
Merged-chr1-37466535-1	chr1	37466035	37467035	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 6 of 15)	intron (NM_173870, intron 6 of 15)	22070.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	21.74	18.89	31.45	14.17	9.8	9.65	9.51	6.19	9.99
Merged-chr17-71711013-2	chr17	71710517	71711517	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177087, intron 14 of 19)	intron (NM_177087, intron 14 of 19)	37756.0	NM_177087	320159.0	Mm.187372	NM_177087	ENSMUSG00000045761	Togaram2	4632412N22Rik|Fam179a	TOG array regulator of axonemal microtubules 2	protein-coding	2.86	0.92	0.92	3.37	1.4	4.82	0.0	0.44	0.0
Merged-chr5-67839121-2	chr5	67838609	67839609	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	MTD|LTR|ERVL-MaLR	8322.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	25.74	18.89	9.25	20.24	12.6	12.86	16.9	15.03	11.24
Merged-chr15-78245393-1	chr15	78244893	78245893	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	582.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	126.42	153.44	169.27	131.57	98.9	186.48	151.03	143.26	124.91
Merged-chr1-125527490-1	chr1	125526990	125527990	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33105.0	NM_001356294	74150.0	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	6.86	2.76	3.7	4.72	1.87	1.61	5.28	2.65	0.0
Merged-chr9-68883210-3	chr9	68882718	68883718	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	117872.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	28.6	27.65	31.45	21.59	25.19	29.74	32.74	24.32	23.73
Merged-chr10-66851277-1	chr10	66850777	66851777	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	69107.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	61.21	73.73	67.52	86.36	76.51	96.45	104.56	116.29	48.09
Merged-chr9-95700490-2	chr9	95699985	95700985	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	49873.0	NM_001311123	22063.0	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	7.44	11.98	7.4	14.17	11.66	13.66	17.96	20.34	9.37
Merged-chr5-112252564-2	chr5	112252067	112253067	+	795.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001312884)	promoter-TSS (NM_001312884)	-49.0	NM_021351	12959.0	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	24.03	28.11	39.77	29.01	26.12	42.6	43.3	35.37	38.72
Merged-chr13-113266716-1	chr13	113266216	113267216	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57057.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	1.14	2.3	2.77	4.72	2.33	4.82	3.17	3.98	5.0
Merged-chr7-141560616-1	chr7	141560116	141561116	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-1564.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	55.49	70.5	73.07	64.77	42.92	56.27	58.09	63.67	58.71
Merged-chr14-103793553-1	chr14	103793053	103794053	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	50148.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.0	3.69	1.85	7.42	3.27	6.43	4.22	1.33	8.12
Merged-chr13-37622865-2	chr13	37622384	37623384	+	795.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-203154.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	21.74	17.97	4.62	10.12	17.26	12.86	17.96	9.29	4.37
Merged-chr11-4094542-3	chr11	4094024	4095024	+	794.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026443, intron 1 of 3)	intron (NM_026443, intron 1 of 3)	907.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	20.02	16.13	11.1	13.49	14.0	11.25	25.35	14.59	4.37
Merged-chr16-21702857-3	chr16	21702362	21703362	+	794.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8197.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	17.16	12.44	9.25	34.41	31.26	15.27	14.79	19.01	6.25
Merged-chr3-122372850-2	chr3	122372360	122373360	+	794.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46897.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	2.86	3.23	6.47	4.72	5.6	4.82	3.17	6.63	4.37
Merged-chr1-182528704-3	chr1	182528209	182529209	+	794.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11099.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	17.16	8.29	12.02	15.52	9.8	16.08	6.34	6.19	2.5
Merged-chr15-100227230-2	chr15	100226742	100227742	+	794.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007497)	promoter-TSS (NM_007497)	-617.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	212.23	258.04	163.72	219.96	281.77	177.64	268.27	312.17	126.15
Merged-chr7-84591533-3	chr7	84591033	84592033	+	794.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010176, intron 11 of 13)	L1ME3A|LINE|L1	14409.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	6.29	3.23	0.0	1.35	5.13	4.82	5.28	1.33	10.62
Merged-chr9-78522013-3	chr9	78521463	78522463	+	794.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-40239.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	36.61	26.73	4.62	51.95	47.12	22.51	70.76	44.22	19.36
Merged-chr9-53603563-2	chr9	53603068	53604068	+	794.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144784, intron 1 of 11)	intron (NM_144784, intron 1 of 11)	6782.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	14.3	9.22	7.4	18.89	11.2	12.86	17.96	9.29	3.75
Merged-chr1-61638913-3	chr1	61638427	61639427	+	794.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081050, exon 1 of 23)	5' UTR (NM_001081050, exon 1 of 23)	103.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	8.58	14.75	5.55	38.46	16.33	17.68	4.22	4.86	1.25
Merged-chr11-5960775-3	chr11	5960276	5961276	+	794.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019661, intron 2 of 6)	intron (NM_019661, intron 2 of 6)	5018.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	9.15	15.21	17.57	18.89	13.06	32.15	21.12	24.32	11.24
Merged-chr10-94919582-5	chr10	94919096	94920096	+	794.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	24982.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	52.06	46.54	9.25	98.51	59.25	48.23	47.53	41.56	26.23
Merged-chr10-54040708-5	chr10	54040219	54041219	+	794.820007	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	35077.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	19.45	10.6	3.7	14.84	24.72	29.74	9.51	6.19	0.62
Merged-chr5-113670804-1	chr5	113670304	113671304	+	794.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20414.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.0	3.69	1.85	1.35	4.67	1.61	6.34	1.77	7.49
Merged-chr5-115534417-3	chr5	115533918	115534918	+	794.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	-25049.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	105.26	82.94	98.97	74.22	56.45	71.54	77.1	75.61	45.59
Merged-chr1-78709333-1	chr1	78708833	78709833	+	794.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50893.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	14.87	12.9	4.62	10.12	6.53	6.43	5.28	7.52	5.0
Merged-chr13-94143452-3	chr13	94142947	94143947	+	794.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	85651.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	16.59	10.14	8.32	35.76	12.6	12.86	26.4	19.46	2.5
Merged-chr2-157108395-3	chr2	157107909	157108909	+	794.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 11 of 16)	BGLII_A|LTR|ERVK	21354.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	7.44	7.83	14.8	10.8	10.73	8.04	15.84	6.63	13.74
Merged-chr2-155710722-3	chr2	155710223	155711223	+	794.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145537, intron 8 of 10)	intron (NM_145537, intron 8 of 10)	-18339.0	NM_001163452	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	9.72	9.22	18.5	9.45	9.33	11.25	11.62	11.5	10.62
Merged-chr8-126830118-1	chr8	126829618	126830618	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18902.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	88.67	73.26	61.05	137.64	50.85	105.3	85.55	42.45	41.22
Merged-chr12-83885220-3	chr12	83884717	83885717	+	794.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 1 of 12)	intron (NR_073564, intron 1 of 12)	-8405.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	5.15	8.29	7.4	8.1	5.6	13.66	8.45	18.57	4.37
Merged-chr5-130456732-1	chr5	130456232	130457232	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	7940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	6.86	2.76	2.77	10.8	5.6	6.43	9.51	7.52	9.37
Merged-chr9-49109278-1	chr9	49108778	49109778	+	794.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359460, intron 5 of 12)	intron (NM_001359460, intron 5 of 12)	6499.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	1.14	1.84	0.0	5.4	4.2	5.63	4.22	1.77	5.0
Merged-chr8-94804719-2	chr8	94804218	94805218	+	794.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5735.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	2.29	2.76	7.4	1.35	1.87	0.8	0.0	3.1	3.75
Merged-chr4-108387784-2	chr4	108387285	108388285	+	794.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4130.0	NM_001099303	545667.0	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	Shisal2a	family with sequence similarity 159, member A	protein-coding	8.58	4.15	0.92	7.42	3.27	4.02	5.28	10.61	7.49
Merged-chr9-121265522-2	chr9	121265024	121266024	+	794.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	11648.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	10.3	7.83	18.5	15.52	14.93	16.08	8.45	6.63	13.74
Merged-chr10-88795410-1	chr10	88794910	88795910	+	794.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175158, exon 22 of 62)	exon (NM_175158, exon 22 of 62)	31404.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	9.72	20.27	18.5	29.01	16.33	40.99	12.67	11.5	15.61
Merged-chr2-133554405-1	chr2	133553905	133554905	+	794.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007553, intron 1 of 2)	CpG	2246.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	2.86	2.3	3.7	11.47	4.67	2.41	2.11	2.21	5.0
Merged-chr17-88123072-2	chr17	88122575	88123575	+	794.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2437.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	42.33	37.78	28.67	38.46	25.19	68.32	40.14	35.37	43.09
Merged-chr12-79356376-3	chr12	79355895	79356895	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	59044.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.15	10.14	0.0	8.1	4.2	4.82	16.9	13.27	11.24
Merged-chr9-58273093-3	chr9	58272591	58273591	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19927.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	74.37	82.94	52.72	76.24	46.65	45.01	138.36	134.86	86.81
Merged-chr12-12287578-3	chr12	12287080	12288080	+	794.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	25441.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	73.22	102.75	78.62	76.24	69.51	73.95	118.29	105.24	58.71
Merged-chr9-70731266-2	chr9	70730756	70731756	+	794.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007399, intron 4 of 15)	L2|LINE|L2	52274.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	22.31	10.14	8.32	23.62	13.53	18.49	16.9	17.24	10.62
Merged-chr7-139249120-3	chr7	139248626	139249626	+	794.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	644.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	144.73	170.95	125.79	157.88	245.38	139.86	214.41	189.69	102.42
Merged-chr4-49627181-3	chr4	49626688	49627688	+	794.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4872.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	4.58	5.99	1.85	7.42	2.33	9.65	3.17	3.98	3.75
Merged-chr12-36041894-3	chr12	36041413	36042413	+	794.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	565.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	104.11	120.26	61.97	182.17	163.74	114.14	25.35	19.46	13.12
Merged-chr14-51062958-2	chr14	51062460	51063460	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5718.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	49.77	60.36	70.3	44.53	50.85	55.46	69.71	52.62	26.23
Merged-chr10-95671295-1	chr10	95670795	95671795	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107149.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.15	6.91	16.65	6.75	5.13	6.43	5.28	3.98	1.25
Merged-chr11-110372378-2	chr11	110371867	110372867	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-26735.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	35.47	36.4	9.25	112.0	117.56	73.95	146.81	177.31	76.82
Merged-chr11-117878029-1	chr11	117877529	117878529	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4503.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	41.19	19.35	18.5	39.81	32.19	31.35	32.74	20.34	7.49
Merged-chr10-117824414-2	chr10	117823888	117824888	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024457, intron 2 of 7)	ID_B1|SINE|B4	21586.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	32.04	49.3	38.85	53.3	55.98	52.25	52.81	45.1	36.85
Merged-chr10-20785372-1	chr10	20784872	20785872	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60294.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	3.43	5.99	2.77	8.77	4.67	1.61	8.45	1.77	5.0
Merged-chr2-59246330-1	chr2	59245830	59246830	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	URR1B|DNA|hAT-Charlie	85480.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	9.72	7.37	5.55	9.45	6.53	12.86	15.84	9.29	6.25
Merged-chr11-107786739-2	chr11	107786230	107787230	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019431, intron 1 of 3)	intron (NM_019431, intron 1 of 3)	7964.0	NM_019431	54377.0	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	8.58	2.3	8.32	7.42	1.87	4.82	3.17	1.77	2.5
Merged-chr17-50388947-3	chr17	50388459	50389459	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95339.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	19.45	20.27	11.1	15.52	21.46	10.45	110.9	140.17	67.45
Merged-chr9-42124359-3	chr9	42123864	42124864	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011436)	promoter-TSS (NM_011436)	-67.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	6.86	2.76	0.0	4.05	2.8	11.25	8.45	7.52	1.87
Merged-chr2-45692954-2	chr2	45692460	45693460	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3645.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.0	12.44	5.55	31.71	33.59	19.29	22.18	14.15	16.24
Merged-chr13-24515552-1	chr13	24515052	24516052	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66637.0	NM_001286100	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	5.15	3.23	3.7	4.72	2.8	8.04	3.17	0.0	0.0
Merged-chr3-19955733-2	chr3	19955230	19956230	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1324.0	NM_001276250	12870.0	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	5.72	5.07	5.55	6.07	4.67	3.22	12.67	6.63	11.87
Merged-chr1-20817374-2	chr1	20816915	20817915	+	794.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008563, exon 3 of 17)	exon (NM_008563, exon 3 of 17)	2897.0	NM_008563	17215.0	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	19.45	20.27	11.1	14.84	11.2	25.72	22.18	9.29	14.99
Merged-chr12-24710823-2	chr12	24710260	24711260	+	794.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009104, intron 5 of 9)	B3|SINE|B2	2506.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	26.31	54.37	33.3	34.41	34.06	24.11	35.91	43.33	33.72
Merged-chr3-121819975-3	chr3	121819479	121820479	+	794.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4677.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.72	3.23	1.85	7.42	2.8	4.82	3.17	3.54	7.49
Merged-chr13-63108785-2	chr13	63108285	63109285	+	794.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-131244.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	9.15	5.99	11.1	22.27	17.73	9.65	2.11	3.1	3.75
Merged-chr6-76266873-1	chr6	76266373	76267373	+	794.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-975604.0	NR_155299	74342.0	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	19.45	28.11	17.57	36.43	38.25	24.92	20.07	13.27	13.74
Merged-chr11-98955277-3	chr11	98954772	98955772	+	794.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-5199.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	49.77	40.55	36.07	48.58	20.06	49.83	36.97	32.72	43.72
Merged-chr16-35986553-3	chr16	35986054	35987054	+	794.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008465, intron 1 of 13)	intron (NM_008465, intron 1 of 13)	3191.0	NM_008465	16646.0	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	10.87	16.13	17.57	14.84	11.2	9.65	17.96	13.71	14.36
Merged-chr13-20157792-3	chr13	20157305	20158305	+	794.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	67298.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	27.46	26.26	24.97	37.11	16.79	19.29	31.69	19.01	21.23
Merged-chr7-43681185-3	chr7	43680684	43681684	+	794.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9153.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	3.43	2.3	0.0	4.72	0.93	1.61	0.0	0.88	2.5
Merged-chr2-118591173-2	chr2	118590662	118591662	+	794.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7049.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	4.0	7.37	3.7	7.42	3.73	1.61	7.39	4.42	3.12
Merged-chr3-116327472-3	chr3	116326967	116327967	+	794.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 7 of 13)	intron (NM_001173553, intron 7 of 13)	26777.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.57	2.3	1.85	7.42	1.87	1.61	3.17	2.21	5.0
Merged-chrX-140600859-2	chrX	140600267	140601267	+	794.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001077364)	promoter-TSS (NM_001077364)	-245.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	8.01	5.53	5.55	10.8	5.13	16.08	6.34	4.86	5.0
Merged-chr6-38952657-2	chr6	38952165	38953165	+	794.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	33679.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	31.46	21.2	2.77	35.76	17.26	14.47	31.69	43.33	9.37
Merged-chr4-86899398-1	chr4	86898898	86899898	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24984.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	13.16	10.6	11.1	18.22	9.33	16.88	9.51	2.65	5.0
Merged-chr8-120576476-1	chr8	120575976	120576976	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198671, exon 14 of 16)	exon (NM_198671, exon 14 of 16)	12599.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	9.72	9.68	23.12	18.89	14.46	24.92	9.51	16.36	13.74
Merged-chr19-38837415-3	chr19	38836876	38837876	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001362424, exon 1 of 11)	exon (NM_001362424, exon 1 of 11)	797.0	NM_001362424	209478.0	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	58.92	33.64	36.07	52.63	39.19	45.82	41.19	20.34	9.99
Merged-chr1-180429074-1	chr1	180428574	180429574	+	794.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54430.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	5.15	2.76	5.55	14.17	8.4	10.45	9.51	8.84	3.75
Merged-chr17-51788347-3	chr17	51787803	51788803	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	23751.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	27.46	33.64	40.7	14.17	10.73	17.68	19.01	12.82	8.74
Merged-chr10-98937914-1	chr10	98937414	98938414	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	22762.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	18.31	8.29	12.02	10.8	6.06	9.65	9.51	7.52	9.99
Merged-chr11-20202919-3	chr11	20202420	20203420	+	794.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	1508.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	232.25	341.44	114.69	302.27	418.92	179.24	321.08	401.05	188.61
Merged-chr7-27574311-1	chr7	27573811	27574811	+	794.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175107, intron 7 of 9)	intron (NM_175107, intron 7 of 9)	13835.0	NM_001122767	66367.0	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	2.29	3.23	0.0	5.4	3.73	7.23	3.17	1.77	5.0
Merged-chr19-47580320-3	chr19	47579827	47580827	+	794.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009289, exon 1 of 19)	exon (NM_009289, exon 1 of 19)	308.0	NM_001164639	20874.0	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	53.2	27.65	17.57	51.95	39.19	49.83	52.81	25.65	25.61
Merged-chr19-10277391-3	chr19	10276766	10277766	+	794.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	27611.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	56.06	45.62	20.35	93.79	71.84	45.82	25.35	53.06	16.24
Merged-chr11-17051708-5	chr11	17051240	17052240	+	794.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029861)	promoter-TSS (NM_029861)	-194.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	6.86	16.13	16.65	18.89	10.73	24.92	11.62	11.05	6.87
Merged-chr3-9610185-2	chr3	9609680	9610680	+	794.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133218)	promoter-TSS (NM_133218)	-95.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.15	4.15	3.7	10.8	1.87	1.61	5.28	2.21	6.87
Merged-chr1-59238034-4	chr1	59237515	59238515	+	794.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028717)	promoter-TSS (NM_028717)	-784.0	NM_028717	74018.0	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	112.12	129.48	48.1	87.04	117.09	79.58	101.39	122.48	67.45
Merged-chr18-37933262-3	chr18	37932781	37933781	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305981, intron 1 of 28)	intron (NM_001305981, intron 1 of 28)	2195.0	NM_001305981	13367.0	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	32.04	29.49	12.02	27.66	21.93	24.92	30.63	31.84	14.36
Merged-chr13-98890440-3	chr13	98889959	98890959	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 2 of 23)	intron (NM_178716, intron 2 of 23)	583.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	102.97	82.48	93.42	138.32	128.76	92.44	123.57	69.86	54.33
Merged-chr2-163401442-3	chr2	163400930	163401930	+	794.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3437.0	NM_001205076	59091.0	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	6.29	4.61	5.55	6.07	3.27	1.61	6.34	1.77	3.75
Merged-chr9-7569147-2	chr9	7568645	7569645	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008611)	TTS (NM_008611)	-2251.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	35.47	19.35	33.3	41.16	32.66	36.97	46.47	41.56	37.47
Merged-chr11-57980495-2	chr11	57980009	57981009	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28555.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	9.72	5.53	7.4	20.92	10.73	20.09	17.96	15.48	13.74
Merged-chr9-63756901-2	chr9	63756412	63757412	+	794.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	1082.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	24.6	11.06	12.02	23.62	11.66	16.08	27.46	17.24	9.99
Merged-chr13-33952255-3	chr13	33951714	33952714	+	794.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-12445.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	26.31	21.66	13.87	28.34	23.79	36.17	41.19	39.8	21.86
Merged-chr5-148634161-1	chr5	148633661	148634661	+	794.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81373.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	1.14	1.38	7.4	0.0	2.33	6.43	3.17	3.54	0.62
Merged-chr11-100994788-3	chr11	100994220	100995220	+	794.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-14732.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	12.01	11.98	13.87	22.27	12.13	13.66	13.73	7.07	13.12
Merged-chr17-34355173-3	chr17	34354676	34355676	+	794.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 1 of 8)	intron (NM_079835, intron 1 of 8)	354.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	46.91	47.0	40.7	39.13	26.12	31.35	61.26	63.67	63.08
Merged-chr16-22116270-3	chr16	22115762	22116762	+	794.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	MTD|LTR|ERVL-MaLR	47037.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	13.73	8.29	7.4	15.52	3.27	6.43	13.73	8.84	14.99
Merged-chr16-29607295-3	chr16	29606807	29607807	+	794.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133752, intron 7 of 28)	intron (NM_133752, intron 7 of 28)	27973.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	28.03	15.21	16.65	33.06	21.93	35.37	35.91	19.01	13.74
Merged-chr4-133875279-1	chr4	133874779	133875779	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285506)	promoter-TSS (NM_001285506)	-548.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	64.07	40.55	42.55	48.58	40.59	69.13	25.35	12.82	18.11
Merged-chr5-108566699-1	chr5	108566199	108567199	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16672.0	NM_007756	12889.0	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	9.15	6.45	7.4	9.45	5.6	12.86	6.34	4.42	8.74
Merged-chr19-21037671-2	chr19	21037193	21038193	+	794.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67017.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	31.46	15.67	18.5	26.31	16.79	27.33	21.12	14.59	9.99
Merged-chr18-70495102-2	chr18	70494607	70495607	+	794.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289650, intron 6 of 8)	RMER15|LTR|ERVL	-21679.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	10.87	2.76	22.2	10.8	9.8	20.9	10.56	7.96	11.24
Merged-chr11-114929257-2	chr11	114928813	114929813	+	794.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	5073.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	124.71	113.35	101.74	119.43	84.9	143.88	70.76	77.82	82.44
Merged-chr2-125792703-2	chr2	125792267	125793267	+	794.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9897.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	30.89	25.8	22.2	36.43	17.73	36.97	39.08	56.6	47.46
Merged-chr11-118424846-2	chr11	118424336	118425336	+	794.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3621.0	NM_001204129	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	28.6	16.59	12.95	20.92	12.6	14.47	16.9	9.73	15.61
Merged-chr2-102883167-2	chr2	102882681	102883681	+	794.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	18484.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	21.74	26.26	32.37	51.95	25.19	46.62	52.81	29.18	31.23
Merged-chr8-68348629-2	chr8	68348130	68349130	+	794.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028182)	TTS (NM_028182)	-19829.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	4.58	1.38	0.0	10.8	4.2	3.22	9.51	5.31	9.37
Merged-chr17-27178244-2	chr17	27177724	27178724	+	794.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A2B_MM|LTR|ERVK	-10460.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	12.01	11.52	7.4	20.24	11.2	29.74	3.17	7.07	11.24
Merged-chr15-79071773-3	chr15	79071278	79072278	+	794.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3445.0	NM_145139	223691.0	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	2.86	6.45	8.32	2.7	6.06	0.0	3.17	2.65	1.25
Merged-chr5-86086953-2	chr5	86086407	86087407	+	794.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310639, intron 4 of 7)	intron (NM_001310639, intron 4 of 7)	15161.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	1.72	5.53	1.85	6.75	8.4	8.04	5.28	4.86	3.12
Merged-chr16-57495908-2	chr16	57495426	57496426	+	794.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-53316.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	93.82	140.08	97.12	103.23	89.57	86.81	101.39	105.24	85.56
Merged-chr4-135891701-3	chr4	135891192	135892192	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-3497.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	6.29	4.61	6.47	6.75	1.87	8.04	8.45	2.21	3.75
Merged-chr5-146675398-3	chr5	146674898	146675898	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90159.0	NM_001359057	14738.0	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	6.29	4.15	0.92	5.4	1.4	3.22	13.73	3.98	6.25
Merged-chr1-43110725-3	chr1	43110247	43111247	+	794.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133818, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	12037.0	NM_133818	98404.0	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	5.72	2.76	1.85	7.42	2.8	4.02	2.11	0.88	8.12
Merged-chr7-16104166-3	chr7	16103675	16104675	+	794.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	5595.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	24.6	18.89	12.95	27.66	20.53	36.97	31.69	24.32	16.86
Merged-chr2-156686686-1	chr2	156686186	156687186	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146128, intron 2 of 12)	intron (NM_146128, intron 2 of 12)	34223.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.0	0.92	5.55	3.37	1.87	1.61	2.11	0.44	0.62
Merged-chr19-56253513-2	chr19	56253043	56254043	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34369.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	33.75	51.15	34.22	14.84	21.93	35.37	32.74	31.39	19.36
Merged-chr8-84064049-2	chr8	84063550	84064550	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2786.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	22.31	38.25	35.15	22.27	19.13	50.64	24.29	19.01	25.61
Merged-chr11-17538417-1	chr11	17537917	17538917	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	280729.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	4.58	5.99	1.85	10.8	3.27	9.65	4.22	1.33	5.0
Merged-chr16-45197024-1	chr16	45196524	45197524	+	794.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27313.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	7.44	3.69	5.55	1.35	4.2	3.22	3.17	0.44	1.25
Merged-chr10-128902597-1	chr10	128902097	128903097	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6322.0	NM_001042580	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	2.86	3.69	1.85	2.02	1.87	5.63	0.0	0.0	5.62
Merged-chrX-7294243-1	chrX	7293743	7294743	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	25115.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	8.58	5.99	0.0	3.37	6.53	8.04	8.45	6.19	5.62
Merged-chr8-80242811-1	chr8	80242311	80243311	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-184803.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	11.44	13.82	11.1	5.4	8.4	12.86	7.39	13.71	7.49
Merged-chr10-85874227-2	chr10	85873681	85874681	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133993, intron 1 of 14)	intron (NM_133993, intron 1 of 14)	2350.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	18.31	26.73	9.25	21.59	16.33	26.53	17.96	22.11	8.12
Merged-chr1-179704470-1	chr1	179703970	179704970	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	36239.0	NM_178653	109232.0	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	10.3	2.76	12.95	2.02	0.93	2.41	1.06	2.21	5.0
Merged-chr2-118295661-1	chr2	118295161	118296161	+	794.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	-9253.0	NR_045919	73358.0	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	2.29	3.23	2.77	2.7	2.33	1.61	7.39	2.65	7.49
Merged-chr7-24618548-1	chr7	24618048	24619048	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001102613, intron 5 of 14)	intron (NM_001102613, intron 5 of 14)	7220.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	1.72	2.76	3.7	2.02	0.93	14.47	10.56	8.84	3.75
Merged-chr3-156560907-3	chr3	156560403	156561403	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177274)	promoter-TSS (NM_177274)	784.0	NR_040398	329782.0	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	1.14	5.53	1.85	4.05	1.4	0.0	3.17	4.86	13.74
Merged-chr14-13130855-1	chr14	13130355	13131355	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3a|LINE|L1	153783.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	4.58	4.15	3.7	3.37	6.06	6.43	6.34	3.1	7.49
Merged-chr6-124966146-2	chr6	124965629	124966629	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164089)	promoter-TSS (NM_001164089)	-591.0	NM_001164089	26894.0	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e|SGN7a	COP9 signalosome subunit 7A	protein-coding	125.28	126.72	106.37	158.56	187.07	131.82	168.99	167.58	107.42
Merged-chr9-21134837-1	chr9	21134337	21135337	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-3562.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	64.64	63.59	92.5	41.16	20.53	40.99	62.31	54.39	30.6
Merged-chr1-128811061-1	chr1	128810561	128811561	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-218762.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.86	1.84	1.85	0.67	0.93	0.0	1.06	1.33	3.75
Merged-chr13-111647479-1	chr13	111646979	111647979	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38699.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	5.15	2.76	2.77	4.72	3.27	3.22	4.22	1.77	1.25
Merged-chr1-156450318-2	chr1	156449808	156450808	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	24020.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	80.66	107.36	63.82	125.5	107.3	97.26	53.87	82.69	23.11
Merged-chr18-5187009-3	chr18	5186514	5187514	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21283.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	26.89	24.88	14.8	26.31	15.86	23.31	22.18	21.67	8.12
Merged-chr4-47248472-2	chr4	47248000	47249000	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 4 of 39)	intron (NM_009928, intron 4 of 39)	40488.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	6.29	4.15	1.85	14.84	8.4	12.86	6.34	3.54	8.12
Merged-chrY-90740421-2	chrY	90739923	90740923	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14627.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	3.43	2.3	0.92	2.02	2.33	0.0	21.12	28.3	68.7
Merged-chr7-96879051-1	chr7	96878551	96879551	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-72476.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	5.72	5.53	1.85	4.05	1.4	1.61	2.11	1.77	2.5
Merged-chr13-24938891-1	chr13	24938391	24939391	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102323, exon 2 of 2)	non-coding (NR_102323, exon 2 of 2)	-1230.0	NM_172532	214579.0	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	4.58	6.91	1.85	5.4	1.4	2.41	9.51	2.21	1.25
Merged-chr18-46473976-4	chr18	46473472	46474472	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	-8156.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	62.93	61.75	33.3	89.06	76.04	110.92	43.3	30.07	19.36
Merged-chr19-56396351-1	chr19	56395851	56396851	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007611)	promoter-TSS (NM_007611)	-778.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	8.58	11.52	12.02	18.89	11.66	5.63	12.67	5.75	6.25
Merged-chr10-5256904-1	chr10	5256404	5257404	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347732, exon 64 of 146)	exon (NM_001347732, exon 64 of 146)	-62197.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	3.43	2.76	0.0	6.07	2.8	3.22	4.22	0.88	7.49
Merged-chr7-73619221-1	chr7	73618721	73619721	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60826.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	372.98	533.13	310.78	404.16	626.05	337.59	396.07	619.48	234.2
Merged-chr8-11118159-1	chr8	11117659	11118659	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109729.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.58	5.07	0.0	1.35	3.27	4.82	1.06	2.21	4.37
Merged-chr8-70152661-1	chr8	70152161	70153161	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001045484)	promoter-TSS (NM_001045484)	-100.0	NM_001045484	17259.0	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	1.72	4.15	1.85	2.02	1.87	1.61	4.22	1.33	0.0
Merged-chr17-5830138-2	chr17	5829617	5830617	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11263.0	NM_025664	66616.0	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	5.15	4.15	16.65	8.1	3.27	0.0	7.39	4.86	1.25
Merged-chr6-145866139-2	chr6	145865691	145866691	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024469)	promoter-TSS (NM_024469)	-771.0	NM_001271768	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	121.85	99.99	45.32	360.97	376.94	240.33	48.58	53.06	11.87
Merged-chr1-24378695-1	chr1	24378195	24379195	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007733, intron 15 of 50)	intron (NM_007733, intron 15 of 50)	183492.0	NM_001290691	12839.0	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	4.58	1.38	1.85	0.67	1.4	9.65	1.06	1.77	3.75
Merged-chr7-96524024-2	chr7	96523525	96524525	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-182061.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	4.0	5.99	1.85	3.37	4.67	5.63	5.28	0.44	2.5
Merged-chr4-34797735-1	chr4	34797235	34798235	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19369.0	NM_025471	66291.0	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	4.58	5.07	5.55	7.42	4.2	2.41	4.22	5.75	6.25
Merged-chr16-23234741-3	chr16	23234234	23235234	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	8713.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	26.89	12.44	9.25	30.36	17.73	22.51	24.29	16.36	11.87
Merged-chr2-6565922-1	chr2	6565422	6566422	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 11 of 15)	intron (NM_001110232, intron 11 of 15)	155740.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	16.02	9.68	5.55	10.12	7.46	4.02	4.22	10.17	7.49
Merged-chr5-124538980-2	chr5	124538492	124539492	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-1799.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	10.3	5.53	2.77	4.72	3.73	13.66	12.67	2.65	11.87
Merged-chr11-101610564-1	chr11	101610064	101611064	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256318)	promoter-TSS (NM_001256318)	-136.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	3.43	2.76	8.32	6.07	1.87	0.0	4.22	2.65	1.25
Merged-chr3-90465419-1	chr3	90464919	90465919	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008727, exon 1 of 22)	exon (NM_008727, exon 1 of 22)	447.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	4.0	2.76	5.55	4.05	3.73	0.0	2.11	0.88	1.25
Merged-chr4-59222459-1	chr4	59221959	59222959	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011673, exon 9 of 9)	3' UTR (NM_011673, exon 9 of 9)	32909.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	12.01	20.74	10.17	15.52	19.59	19.29	14.79	15.48	9.37
Merged-chr11-106354274-1	chr11	106353774	106354774	+	794.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4884.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	8.01	2.3	3.7	3.37	3.73	6.43	4.22	2.65	2.5
Merged-chr17-27977235-2	chr17	27976730	27977730	+	794.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286041, intron 3 of 23)	intron (NM_001286041, intron 3 of 23)	67924.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	9.72	12.44	24.05	61.4	34.52	34.56	1.06	0.0	6.25
Merged-chr7-127557894-3	chr7	127557390	127558390	+	793.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304266, intron 33 of 33)	intron (NM_001304266, intron 33 of 33)	-3333.0	NM_001304267	105180375.0	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	18.88	11.98	16.65	13.49	4.67	12.86	8.45	8.4	10.62
Merged-chr10-122953683-2	chr10	122953189	122954189	+	793.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	32035.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	5.72	0.92	1.85	7.42	6.53	6.43	53.87	50.41	23.11
Merged-chr17-51382758-2	chr17	51382255	51383255	+	793.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	65514.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	7.44	8.75	1.85	2.7	3.73	6.43	8.45	7.07	3.75
Merged-chr10-60283668-2	chr10	60283183	60284183	+	793.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146124)	promoter-TSS (NM_001146124)	-778.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	143.59	170.03	132.27	138.32	145.08	193.71	186.94	278.57	158.63
Merged-chr17-8372063-2	chr17	8371547	8372547	+	793.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001161832)	promoter-TSS (NM_001161832)	-349.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	2.86	1.38	3.7	8.1	0.93	3.22	2.11	1.33	2.5
Merged-chr17-3205112-2	chr17	3204622	3205622	+	793.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90150.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.15	5.07	0.92	9.45	7.93	4.82	6.34	3.54	6.87
Merged-chrX-99523440-2	chrX	99522948	99523948	+	793.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52713.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	1.72	1.84	0.0	2.02	2.33	1.61	2.11	3.54	1.25
Merged-chr5-36466084-2	chr5	36465585	36466585	+	793.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024478, intron 1 of 3)	intron (NM_024478, intron 1 of 3)	900.0	NM_024478	17713.0	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	45.76	44.7	36.07	41.83	46.65	54.66	72.88	50.85	24.36
Merged-chr1-160211809-3	chr1	160211281	160212281	+	793.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009786, intron 1 of 5)	intron (NM_009786, intron 1 of 5)	1111.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	65.79	82.48	50.87	91.09	109.16	86.81	77.1	79.59	43.72
Merged-chr19-44280952-1	chr19	44280452	44281452	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12724.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	16.02	6.91	5.55	23.62	8.86	4.82	8.45	5.31	3.12
Merged-chr7-80077918-1	chr7	80077418	80078418	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	ID_B1|SINE|B4	-2661.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	42.33	36.86	42.55	31.71	39.19	53.85	31.69	42.89	48.09
Merged-chr7-16223125-1	chr7	16222625	16223625	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	10.3	15.67	5.55	9.45	10.26	12.06	7.39	8.84	7.49
Merged-chr17-83675593-3	chr17	83675089	83676089	+	793.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-30574.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	49.77	33.64	45.32	42.51	65.31	34.56	53.87	68.09	46.22
Merged-chr1-165643887-1	chr1	165643387	165644387	+	793.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9346.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	57.21	47.46	45.32	49.25	43.39	90.83	59.15	87.11	44.97
Merged-chr1-43561324-3	chr1	43560831	43561831	+	793.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 4 of 4)	intron (NM_010879, intron 4 of 4)	115580.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	13.73	7.83	12.95	10.8	9.33	14.47	8.45	6.19	12.49
Merged-chr11-106751659-3	chr11	106751162	106752162	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001271372, exon 2 of 7)	exon (NM_001271372, exon 2 of 7)	436.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	343.23	322.55	234.01	310.37	257.51	223.45	304.18	400.16	182.99
Merged-chr6-129344609-3	chr6	129344102	129345102	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A3|LTR|ERVK	-5642.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	6.29	7.37	2.77	10.12	4.67	8.84	6.34	5.75	17.49
Merged-chr16-23376354-3	chr16	23375855	23376855	+	793.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52778.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	21.74	25.8	21.27	40.48	30.32	42.6	50.7	42.89	28.73
Merged-chr7-120883913-4	chr7	120883414	120884414	+	793.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267710, intron 6 of 17)	B1_Mus2|SINE|Alu	32725.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	27.46	29.03	22.2	24.96	22.86	24.11	22.18	19.9	14.36
Merged-chrX-47913180-2	chrX	47912686	47913686	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177215, intron 2 of 23)	intron (NM_177215, intron 2 of 23)	730.0	NM_177215	320634.0	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	OCRL, inositol polyphosphate-5-phosphatase	protein-coding	81.23	81.1	53.65	68.82	56.91	74.75	64.43	64.56	39.35
Merged-chr14-9660061-2	chr14	9659547	9660547	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	L1_Mus3|LINE|L1	-224048.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	7.44	3.23	4.62	6.07	7.46	4.82	6.34	4.42	7.49
Merged-chr12-64976158-2	chr12	64975661	64976661	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177805, intron 1 of 19)	intron (NM_177805, intron 1 of 19)	10419.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	24.6	26.26	12.95	20.92	6.06	19.29	16.9	15.92	18.11
Merged-chr8-80319095-1	chr8	80318595	80319595	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-174950.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	14.87	7.83	17.57	12.14	10.26	12.86	7.39	11.05	9.99
Merged-chr6-134211490-2	chr6	134210995	134211995	+	793.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	175795.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.59	3.69	11.1	20.92	14.93	6.43	1.06	0.44	0.0
Merged-chr10-121689768-1	chr10	121689268	121690268	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177335, intron 11 of 12)	intron (NM_177335, intron 11 of 12)	48067.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	1.72	1.84	1.85	4.72	2.33	0.0	3.17	3.54	1.25
Merged-chr11-17170158-1	chr11	17169658	17170658	+	793.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	10860.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	18.31	39.17	30.52	26.99	36.39	30.54	19.01	19.01	22.48
Merged-chr12-69373105-2	chr12	69372686	69373686	+	793.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007481, exon 2 of 2)	exon (NM_007481, exon 2 of 2)	1036.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	95.53	113.35	90.65	85.01	109.16	115.75	124.63	100.37	74.32
Merged-chr11-94564560-3	chr11	94564048	94565048	+	793.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007689)	promoter-TSS (NM_007689)	-499.0	NM_007689	12643.0	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	4.0	4.15	5.55	6.75	1.4	6.43	5.28	0.88	6.25
Merged-chr2-120036388-3	chr2	120035889	120036889	+	793.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104353, exon 15 of 27)	non-coding (NR_104353, exon 15 of 27)	2956.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	5.72	3.69	11.1	6.07	5.13	4.82	11.62	6.19	5.62
Merged-chr1-94658401-3	chr1	94657876	94658876	+	793.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-139066.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	1.14	3.69	0.0	6.07	7.0	0.0	2.11	2.21	4.37
Merged-chr1-125468107-3	chr1	125467603	125468603	+	793.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32376.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	30.32	44.7	37.92	43.18	37.79	39.39	92.94	124.25	51.84
Merged-chr9-58583248-3	chr9	58582707	58583707	+	793.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151824, intron 1 of 7)	intron (NR_151824, intron 1 of 7)	967.0	NM_001357751	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	77.23	84.32	72.15	89.06	83.97	94.85	118.29	136.63	66.82
Merged-chr1-89524587-3	chr1	89524107	89525107	+	793.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	69796.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	4.58	5.99	0.0	5.4	3.73	4.82	6.34	1.33	2.5
Merged-chr3-9881124-3	chr3	9880628	9881628	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-47449.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.87	12.44	7.4	16.87	14.0	17.68	36.97	29.63	20.61
Merged-chr1-162838097-1	chr1	162837597	162838597	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010231, intron 5 of 8)	intron (NM_010231, intron 5 of 8)	21903.0	NM_001330291	14261.0	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	2.29	6.45	1.85	0.0	3.73	4.82	4.22	0.88	2.5
Merged-chr17-32280732-3	chr17	32280203	32281203	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	3420.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	32.04	33.18	24.05	18.22	24.72	47.42	27.46	28.3	28.1
Merged-chr11-103413283-1	chr11	103412783	103413783	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183034)	promoter-TSS (NM_183034)	-619.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	88.67	81.1	49.02	104.58	93.77	65.91	139.42	138.4	48.71
Merged-chr14-70932151-1	chr14	70931651	70932651	+	793.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	42044.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	13.73	17.51	12.95	14.17	8.4	30.54	11.62	7.96	8.74
Merged-chr9-120083300-3	chr9	120082806	120083806	+	793.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16A|LTR|ERVL	-8827.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	2.86	1.84	0.0	4.05	0.93	1.61	1.06	1.33	3.12
Merged-chr10-19613302-2	chr10	19612795	19613795	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-8733.0	NM_178258	237310.0	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	27.46	30.87	35.15	31.71	25.19	32.96	41.19	34.05	32.48
Merged-chr10-75484880-2	chr10	75484381	75485381	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32500.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	8.01	5.99	1.85	9.45	3.27	3.22	4.22	5.31	1.25
Merged-chr11-72411762-2	chr11	72411260	72412260	+	793.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177776)	promoter-TSS (NM_177776)	-47.0	NM_177776	276829.0	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	3.43	1.84	1.85	6.07	1.87	0.0	3.17	0.44	2.5
Merged-chr4-136118651-2	chr4	136118155	136119155	+	793.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25167.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	9.15	9.68	2.77	10.8	9.8	4.82	19.01	9.29	2.5
Merged-chr16-44832472-3	chr16	44831970	44832970	+	793.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207244, intron 2 of 5)	intron (NM_207244, intron 2 of 5)	11742.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	16.59	8.29	9.25	15.52	7.46	2.41	11.62	10.61	6.87
Merged-chr15-9111139-3	chr15	9110638	9111638	+	793.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285980)	TTS (NM_001285980)	29316.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	6.86	5.07	19.42	10.8	4.2	9.65	11.62	2.21	5.0
Merged-chr3-60320382-2	chr3	60319882	60320882	+	793.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-152448.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.44	5.53	2.77	4.05	2.8	1.61	1.06	4.86	2.5
Merged-chrX-20820220-3	chrX	20819730	20820730	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28313.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	1.72	5.07	5.55	7.42	2.33	1.61	4.22	6.19	5.0
Merged-chr11-69415070-3	chr11	69414609	69415609	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1434.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	67.5	55.75	54.57	58.7	20.06	43.4	116.18	65.88	47.46
Merged-chr11-53825599-3	chr11	53825103	53826103	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	33653.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	13.73	4.61	3.7	8.1	4.67	6.43	11.62	7.52	5.0
Merged-chr3-94565725-3	chr3	94565227	94566227	+	793.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	16989.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	10.3	8.29	15.72	21.59	14.0	16.08	8.45	2.21	5.62
Merged-chr15-31367383-6	chr15	31366924	31367924	+	793.5361330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026153, exon 1 of 2)	5' UTR (NM_026153, exon 1 of 2)	335.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	17.73	6.91	1.85	26.99	15.86	14.47	15.84	5.75	1.25
Merged-chr4-124741832-3	chr4	124741344	124742344	+	793.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_126474)	promoter-TSS (NR_126474)	-6.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	49.2	57.6	29.6	64.1	46.65	49.03	69.71	51.73	39.35
Merged-chr2-122381175-2	chr2	122380667	122381667	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12249.0	NM_001013829	435684.0	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	12.59	8.75	3.7	10.12	8.4	14.47	11.62	13.71	4.37
Merged-chr9-62421281-1	chr9	62420781	62421781	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175484, exon 12 of 12)	3' UTR (NM_175484, exon 12 of 12)	79938.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	2.29	2.3	3.7	7.42	5.6	5.63	4.22	1.77	3.75
Merged-chr3-8990556-2	chr3	8990042	8991042	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	13662.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	74.94	72.34	77.7	84.34	55.51	62.7	108.79	95.07	68.7
Merged-chr9-25073086-1	chr9	25072586	25073586	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78695.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	9.15	2.3	5.55	2.02	1.87	1.61	3.17	3.54	0.62
Merged-chrX-155624769-1	chrX	155624269	155625269	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1442.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	3.43	3.69	0.0	3.37	2.8	4.82	1.06	0.88	4.37
Merged-chr18-60908249-3	chr18	60907759	60908759	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3981.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	5.72	2.3	11.1	3.37	0.93	3.22	7.39	2.65	11.24
Merged-chr5-99244211-2	chr5	99243778	99244778	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	B1_Mur3|SINE|Alu	8649.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	68.65	67.74	79.55	85.69	51.78	98.06	88.72	86.66	68.7
Merged-chr15-90403805-3	chr15	90403277	90404277	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50067.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	4.58	4.61	4.62	4.05	1.4	4.02	6.34	3.1	6.25
Merged-chr2-58111261-2	chr2	58110753	58111753	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	48869.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	1.14	2.76	0.0	2.02	1.87	0.0	0.0	0.44	2.5
Merged-chr14-48590132-2	chr14	48589605	48590605	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72629.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	5.15	5.07	3.7	20.24	27.06	13.66	0.0	0.88	0.0
Merged-chr1-189689245-1	chr1	189688745	189689745	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.58	5.99	1.85	20.92	10.73	8.84	4.22	2.65	1.25
Merged-chr8-11174055-1	chr8	11173555	11174555	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138750.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.58	0.46	6.47	2.02	0.0	0.0	2.11	1.33	1.25
Merged-chr1-66987988-1	chr1	66987488	66988488	+	793.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42932.0	NM_021285	17901.0	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	1.72	0.46	0.0	8.77	3.73	1.61	1.06	0.44	4.37
Merged-chr1-24679653-2	chr1	24679155	24680155	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	intron (NM_001310483, intron 1 of 15)	737.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	129.28	151.6	61.97	184.87	138.09	110.12	177.44	158.74	77.44
Merged-chr16-77644048-2	chr16	77643544	77644544	+	793.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2229.0	NR_029540	723952.0		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	10.87	10.14	7.4	8.77	9.33	8.84	6.34	5.75	2.5
Merged-chr5-22923648-1	chr5	22923148	22924148	+	793.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-176764.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.29	7.37	1.85	1.35	2.33	0.0	8.45	4.42	7.49
Merged-chr6-38360211-3	chr6	38359725	38360725	+	793.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5622.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	11.44	7.37	1.85	7.42	10.26	3.22	17.96	14.15	10.62
Merged-chr14-21747923-2	chr14	21747415	21748415	+	793.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 1 of 7)	intron (NM_001007268, intron 1 of 7)	707.0	NM_001007268	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	2.86	7.37	2.77	9.45	4.67	0.0	12.67	6.19	7.49
Merged-chr11-115367748-2	chr11	115367251	115368251	+	793.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346774)	promoter-TSS (NM_001346774)	5.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	4.58	1.38	5.55	5.4	0.47	6.43	5.28	3.54	0.0
Merged-chr1-78724650-3	chr1	78724167	78725167	+	793.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66227.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	3.43	1.84	1.85	3.37	0.0	0.0	3.17	2.21	1.25
Merged-chr4-109438128-3	chr4	109437615	109438615	+	793.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145948, intron 12 of 17)	intron (NM_001145948, intron 12 of 17)	22468.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	1.14	1.84	0.92	6.07	0.47	4.02	2.11	1.33	3.75
Merged-chr14-54227051-3	chr14	54226569	54227569	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26860.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	16.02	7.37	6.47	14.17	6.06	8.84	21.12	6.63	13.12
Merged-chr6-54705464-3	chr6	54704980	54705980	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23856.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	1.72	1.38	5.55	2.02	0.93	1.61	4.22	2.65	1.25
Merged-chr5-148595549-3	chr5	148595051	148596051	+	793.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42763.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	26.31	13.82	17.57	18.89	15.86	20.09	31.69	28.3	31.23
Merged-chr5-122899227-3	chr5	122898711	122899711	+	793.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	1139.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	90.38	71.42	96.2	67.47	52.72	50.64	61.26	69.86	48.09
Merged-chr19-11098567-3	chr19	11098059	11099059	+	793.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027058, intron 6 of 6)	intron (NM_027058, intron 6 of 6)	-17456.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	20.02	24.42	24.05	18.22	17.73	16.08	20.07	25.2	15.61
Merged-chr8-120570506-3	chr8	120570033	120571033	+	793.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145896, intron 8 of 15)	intron (NM_001145896, intron 8 of 15)	18542.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	13.73	4.61	5.55	10.12	3.73	9.65	13.73	7.52	6.25
Merged-chr5-99289314-3	chr5	99288832	99289832	+	793.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-36405.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	27.46	33.18	15.72	35.76	26.12	37.78	20.07	12.38	18.74
Merged-chr1-151269934-3	chr1	151269448	151270448	+	793.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74538.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	7.44	14.28	24.05	16.87	26.59	19.29	22.18	17.24	15.61
Merged-chr7-30445547-3	chr7	30445084	30446084	+	793.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007467)	promoter-TSS (NM_007467)	-2.0	NM_007467	11803.0	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	4.0	0.92	0.0	2.7	0.0	9.65	4.22	0.44	1.25
Merged-chr10-23177430-5	chr10	23176924	23177924	+	793.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	172466.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	20.02	32.25	18.5	61.4	56.91	49.03	49.64	62.35	31.23
Merged-chr14-16538424-2	chr14	16537907	16538907	+	793.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	L1_Mus1|LINE|L1	37069.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	7.44	3.69	2.77	3.37	1.4	0.8	2.11	0.88	5.62
Merged-chr6-42373164-3	chr6	42372666	42373666	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023580, exon 1 of 18)	exon (NM_023580, exon 1 of 18)	102.0	NM_023580	13835.0	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	21.17	4.61	5.55	8.1	6.06	8.04	8.45	5.31	3.12
Merged-chr2-153092416-1	chr2	153091916	153092916	+	793.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16052.0	NM_001172117	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	46.34	38.71	46.25	29.69	10.26	31.35	41.19	42.45	19.98
Merged-chr19-10693178-3	chr19	10692672	10693672	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MB3|LINE|L1	4437.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	90.96	102.75	37.0	48.58	28.46	52.25	49.64	61.02	25.61
Merged-chr8-115711347-3	chr8	115710837	115711837	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4443.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	46.34	52.53	59.2	38.46	54.58	39.39	70.76	57.04	33.72
Merged-chrX-60402155-1	chrX	60401655	60402655	+	793.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	1850.0	NM_001359002	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	8.58	11.52	7.4	14.17	14.93	16.88	3.17	15.48	11.24
Merged-chr5-67264270-3	chr5	67263766	67264766	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285452, intron 2 of 6)	intron (NM_001285452, intron 2 of 6)	3701.0	NM_030108	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	5.72	10.6	6.47	6.75	12.13	16.08	5.28	15.03	11.24
Merged-chr1-131432085-3	chr1	131431561	131432561	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95300.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	76.08	85.25	50.87	92.44	59.71	73.14	47.53	79.15	54.33
Merged-chr19-15518031-3	chr19	15517540	15518540	+	793.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	406582.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	5.15	3.69	0.0	4.72	4.67	6.43	0.0	2.21	2.5
Merged-chr1-72123782-2	chr1	72123294	72124294	+	793.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88513.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.92	1.85	2.7	0.93	0.8	1.06	2.21	2.5
Merged-chr11-103310107-3	chr11	103309610	103310610	+	793.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34592.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	51.48	53.45	38.85	56.68	25.19	56.27	57.03	45.1	32.48
Merged-chr1-161170834-3	chr1	161170327	161171327	+	793.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028664)	TTS (NM_028664)	-11513.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	3.43	0.46	7.4	6.75	2.33	1.61	4.22	2.65	1.25
Merged-chr2-26485894-3	chr2	26485381	26486381	+	793.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	-15762.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	28.6	23.96	16.65	28.34	14.93	31.35	29.57	18.13	23.11
Merged-chr11-80171462-2	chr11	80170944	80171944	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 7 of 10)	intron (NM_172133, intron 7 of 10)	-12428.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	238.55	215.65	161.87	265.84	160.01	218.63	228.14	245.84	128.03
Merged-chr7-143769724-1	chr7	143769224	143770224	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2731.0	NM_203492	381974.0	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	4.58	6.91	3.7	5.4	11.2	8.84	3.17	1.33	1.25
Merged-chr18-12734678-2	chr18	12734172	12735172	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 11 of 13)	intron (NM_028341, intron 11 of 13)	-6683.0	NM_181731	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	15.45	19.35	9.25	14.17	11.66	19.29	24.29	19.01	31.23
Merged-chr10-14537311-2	chr10	14536805	14537805	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002268, intron 1 of 24)	RLTR40|LTR|ERVK	7731.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	1.14	0.46	0.0	0.67	1.87	0.0	6.34	0.88	3.75
Merged-chr2-101699502-2	chr2	101698981	101699981	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009424, exon 8 of 8)	3' UTR (NM_009424, exon 8 of 8)	21061.0	NM_001303273	22034.0	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	26.89	21.2	24.97	16.87	15.86	16.08	27.46	23.43	26.23
Merged-chr8-103578317-1	chr8	103577817	103578817	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-25482.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	17.16	20.74	4.62	37.78	26.59	44.21	19.01	28.3	23.73
Merged-chr11-104545953-2	chr11	104545447	104546447	+	793.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145436, intron 1 of 18)	B3A|SINE|B2	4673.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	28.6	25.34	29.6	34.41	29.39	53.85	21.12	23.88	19.98
Merged-chr1-192763119-2	chr1	192762602	192763602	+	793.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 1 of 11)	MTE2b|LTR|ERVL-MaLR	8117.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	13.16	8.75	5.55	4.05	2.33	1.61	5.28	6.63	6.25
Merged-chr16-65472649-3	chr16	65472145	65473145	+	793.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47984.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.0	5.07	1.85	4.72	1.4	1.61	1.06	1.77	0.0
Merged-chr9-9239003-3	chr9	9238497	9239497	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027823)	promoter-TSS (NM_027823)	16.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	14.87	13.82	12.02	29.69	17.73	27.33	31.69	23.43	17.49
Merged-chr5-139388361-3	chr5	139387850	139388850	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030258, intron 1 of 1)	intron (NM_030258, intron 1 of 1)	-1554.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	75.51	58.52	66.6	74.22	76.97	102.88	62.31	49.52	52.46
Merged-chr2-181305123-3	chr2	181304632	181305632	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9368.0	NM_009133	20262.0	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	5.15	1.38	7.4	6.07	0.93	8.04	5.28	3.54	11.24
Merged-chr4-128981267-3	chr4	128980773	128981773	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11951.0	NM_016895	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	60.64	57.14	67.52	85.01	40.59	72.34	67.6	57.92	46.22
Merged-chr8-70943392-3	chr8	70942879	70943879	+	793.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	12064.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	4.58	4.15	9.25	8.1	1.87	4.02	8.45	4.42	11.87
Merged-chr15-93294678-3	chr15	93294169	93295169	+	793.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	Lx7|LINE|L1	-19490.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	38.9	41.93	30.52	31.71	16.33	42.6	26.4	29.63	21.23
Merged-chr13-48549795-3	chr13	48549281	48550281	+	793.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11509.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	40.62	37.78	50.87	31.71	32.66	24.92	77.1	79.15	43.09
Merged-chr4-136897317-1	chr4	136896817	136897817	+	793.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007572, intron 2 of 2)	intron (NM_007572, intron 2 of 2)	1527.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	164.75	169.57	158.17	131.57	167.01	164.78	218.63	196.32	88.68
Merged-chr8-70863412-3	chr8	70862891	70863891	+	793.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6383.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	16.59	8.75	3.7	5.4	4.2	3.22	13.73	1.77	2.5
Merged-chr2-120469968-3	chr2	120469463	120470463	+	793.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-596.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	24.03	25.8	12.95	18.22	13.06	8.04	9.51	11.94	10.62
Merged-chr3-55080284-2	chr3	55079784	55080784	+	793.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040593, intron 6 of 7)	intron (NR_040593, intron 6 of 7)	25042.0	NR_040593	70970.0	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	1.14	3.69	1.85	6.75	0.93	1.61	1.06	3.98	0.0
Merged-chr14-14673451-2	chr14	14672964	14673964	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29561.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	10.3	10.6	12.95	10.8	8.86	7.23	9.51	4.86	6.25
Merged-chr2-32982871-2	chr2	32982351	32983351	+	793.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019488)	promoter-TSS (NM_019488)	-768.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	48.05	39.63	21.27	36.43	27.99	34.56	43.3	50.41	28.1
Merged-chr13-37998370-2	chr13	37997863	37998863	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-4155.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	31.46	37.32	25.9	28.34	26.12	32.15	29.57	16.8	17.49
Merged-chr7-7130898-2	chr7	7130403	7131403	+	793.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029584, exon 4 of 4)	3' UTR (NM_029584, exon 4 of 4)	5852.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	79.52	86.17	41.62	69.5	60.18	61.89	65.48	86.66	42.47
Merged-chr18-49968890-3	chr18	49968382	49969382	+	793.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10545.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	9.72	4.61	1.85	4.72	5.13	3.22	4.22	2.21	3.75
Merged-chrX-163746210-3	chrX	163745714	163746714	+	793.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15118.0	NM_028842	74264.0	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	17.16	18.43	14.8	20.92	14.0	12.06	26.4	17.24	13.74
Merged-chr18-64991332-2	chr18	64990826	64991826	+	793.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	RSINE1|SINE|B4	-32201.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.86	5.07	10.17	9.45	4.67	7.23	10.56	5.31	1.87
Merged-chr6-54057188-3	chr6	54056647	54057647	+	793.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MIR3|SINE|MIR	17215.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	10.3	16.59	3.7	24.96	11.66	4.82	12.67	11.94	6.25
Merged-chr13-113271377-3	chr13	113270861	113271861	+	793.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61702.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	62.93	57.6	18.5	41.16	24.26	28.94	51.75	34.93	19.98
Merged-chr6-38911358-3	chr6	38910865	38911865	+	793.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7621.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	16.02	7.37	1.85	11.47	3.73	1.61	4.22	7.52	9.99
Merged-chr14-51026910-2	chr14	51026406	51027406	+	793.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14961.0	NM_183032	328401.0	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	5.72	2.3	3.7	4.72	6.06	0.0	2.11	6.63	3.12
Merged-chr5-62845006-3	chr5	62844494	62845494	+	793.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	31171.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	68.65	88.93	62.9	69.5	57.38	62.7	50.7	68.54	55.58
Merged-chr2-52577812-3	chr2	52577298	52578298	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-19187.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	32.61	42.39	64.75	31.71	25.66	29.74	35.91	26.09	27.48
Merged-chr7-19218005-2	chr7	19217510	19218510	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175668, intron 1 of 1)	G-rich|Low_complexity|Low_complexity	5472.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	14.3	17.97	16.65	20.92	15.39	24.11	4.22	9.29	8.74
Merged-chr8-79367478-1	chr8	79366978	79367978	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	intron (NM_008539, intron 2 of 6)	31990.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	10.3	8.29	6.47	8.1	5.13	4.82	7.39	8.84	2.5
Merged-chr9-106476756-2	chr9	106476301	106477301	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145620)	promoter-TSS (NM_145620)	148.0	NM_001311150	235587.0	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	59.49	76.49	61.97	84.34	67.18	82.79	87.66	74.28	50.59
Merged-chr10-37250246-1	chr10	37249746	37250746	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111320.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	30.32	26.73	37.92	23.62	14.46	33.76	26.4	13.27	18.11
Merged-chr1-11637245-1	chr1	11636745	11637745	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160369, intron 7 of 13)	intron (NM_001160369, intron 7 of 13)	223140.0	NM_001160371	320492.0	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	2.29	2.3	5.55	4.72	7.93	10.45	11.62	6.63	9.37
Merged-chr7-135689913-3	chr7	135689457	135690457	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081117, exon 14 of 14)	3' UTR (NM_001081117, exon 14 of 14)	26422.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	31.46	47.46	49.95	43.18	28.46	54.66	50.7	48.2	38.72
Merged-chr12-21371085-2	chr12	21370586	21371586	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	2546.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	72.65	97.69	52.72	73.54	53.18	86.01	152.09	190.57	98.05
Merged-chr5-150116804-1	chr5	150116304	150117304	+	793.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98129.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.29	2.76	5.55	4.72	3.27	4.02	28.52	12.38	8.12
Merged-chr15-58701685-2	chr15	58701183	58702183	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121744.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	58.35	39.63	32.37	47.23	48.98	45.82	70.76	44.66	30.6
Merged-chr13-112397330-1	chr13	112396830	112397830	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-66740.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	155.6	125.79	93.42	91.76	57.38	45.82	100.34	84.01	45.59
Merged-chr4-53264757-2	chr4	53264231	53265231	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033139, intron 1 of 1)	intron (NR_033139, intron 1 of 1)	761.0	NR_033140	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	34.9	31.33	19.42	45.21	27.06	35.37	22.18	19.9	6.25
Merged-chr3-136790339-1	chr3	136789839	136790839	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	120273.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.87	10.6	7.4	11.47	8.4	12.06	5.28	3.98	4.37
Merged-chr14-103020990-2	chr14	103020495	103021495	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	12808.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	2.86	4.61	3.7	5.4	3.73	0.0	11.62	5.31	3.75
Merged-chr4-46389886-2	chr4	46389390	46390390	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029086)	promoter-TSS (NM_029086)	-453.0	NM_001347095	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	251.13	330.38	211.81	214.56	220.66	174.42	235.53	313.94	119.28
Merged-chr2-50525052-2	chr2	50524548	50525548	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	170023.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	4.0	4.61	1.85	8.1	2.33	0.0	8.45	5.31	1.25
Merged-chr4-129640338-1	chr4	129639838	129640838	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199695, exon 2 of 11)	exon (NM_001199695, exon 2 of 11)	467.0	NM_001005506	109658.0	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	64.64	74.19	66.6	67.47	57.85	89.22	73.93	56.6	60.58
Merged-chr12-16897395-2	chr12	16896904	16897904	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	MTC|LTR|ERVL-MaLR	2426.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	33.18	36.4	33.3	24.96	41.99	28.13	24.29	16.36	23.73
Merged-chr18-4347888-1	chr18	4347388	4348388	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5065.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	49.2	57.6	49.95	44.53	47.58	53.85	64.43	72.52	47.46
Merged-chr15-42965482-1	chr15	42964982	42965982	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	205336.0	NM_001357957	239405.0	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	1.72	2.76	3.7	4.72	1.87	4.02	4.22	2.65	4.37
Merged-chr10-7057748-1	chr10	7057248	7058248	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34563.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	12.01	6.45	5.55	4.05	3.73	8.04	1.06	1.33	2.5
Merged-chr8-120510173-3	chr8	120509659	120510659	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	21293.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	23.45	13.82	12.02	29.69	18.66	28.13	36.97	21.22	13.12
Merged-chr10-94039040-1	chr10	94038540	94039540	+	793.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	3039.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.86	3.69	5.55	10.12	5.13	3.22	55.98	40.68	21.23
Merged-chr1-36070160-1	chr1	36069660	36070660	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	1760.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	79.52	69.58	66.6	81.64	87.24	81.18	109.84	103.02	62.45
Merged-chr3-62338989-1	chr3	62338489	62339489	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081295, exon 1 of 14)	5' UTR (NM_001081295, exon 1 of 14)	212.0	NM_001081295	622434.0	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	6.86	2.3	1.85	4.05	6.06	1.61	1.06	0.0	3.75
Merged-chr2-60123659-2	chr2	60123172	60124172	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	2068.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	52.06	47.92	21.27	53.98	44.32	17.68	63.37	61.9	28.73
Merged-chr8-66400181-2	chr8	66399683	66400683	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175188, intron 5 of 7)	Lx8|LINE|L1	13882.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	24.03	15.21	9.25	13.49	7.93	28.94	22.18	15.92	23.73
Merged-chr8-46894538-2	chr8	46894041	46895041	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-92346.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	28.6	20.74	17.57	32.39	18.66	32.15	20.07	26.97	14.36
Merged-chr16-30788332-1	chr16	30787832	30788832	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	188609.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	105.83	122.57	86.95	106.61	76.51	129.41	111.96	73.84	89.31
Merged-chr8-10845948-2	chr8	10845460	10846460	+	793.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36494.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	16.59	9.68	11.1	22.94	9.33	6.43	7.39	5.31	3.75
Merged-chr12-84100901-1	chr12	84100401	84101401	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172580, exon 1 of 3)	5' UTR (NM_172580, exon 1 of 3)	247.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	8.58	6.45	4.62	25.64	13.06	8.04	7.39	8.4	3.12
Merged-chr16-42895922-1	chr16	42895422	42896422	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040402, intron 2 of 3)	Charlie7|DNA|hAT-Charlie	-11723.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	7.44	9.68	12.02	10.8	9.33	10.45	13.73	6.63	15.61
Merged-chr2-6460335-1	chr2	6459835	6460835	+	793.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	107599.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	28.03	20.27	11.1	32.39	17.26	12.86	31.69	20.34	8.12
Merged-chr4-116719615-2	chr4	116719112	116720112	+	792.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1343.0	NM_146151	230661.0	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	9.72	6.45	10.17	10.12	4.2	8.84	4.22	11.94	7.49
Merged-chr6-82909589-3	chr6	82909024	82910024	+	792.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-27671.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	6.86	5.99	6.47	18.22	14.0	11.25	8.45	2.21	1.25
Merged-chr17-45623656-3	chr17	45623166	45624166	+	792.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-21564.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	5.72	8.75	12.02	3.37	7.0	9.65	17.96	11.94	18.74
Merged-chr9-118748537-2	chr9	118748020	118749020	+	792.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	36828.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	31.46	18.43	18.5	53.3	36.39	20.09	6.34	7.07	6.25
Merged-chr1-184260955-2	chr1	184260465	184261465	+	792.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226584.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	18.31	18.43	13.87	14.17	10.73	12.86	24.29	15.03	8.74
Merged-chr2-77277838-2	chr2	77277346	77278346	+	792.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	2746.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	5.72	8.75	1.85	13.49	5.6	7.23	9.51	11.5	10.62
Merged-chr2-72842082-3	chr2	72841607	72842607	+	792.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28390.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	9.72	10.6	5.55	4.05	8.4	4.02	27.46	20.78	10.62
Merged-chr1-37735038-3	chr1	37734554	37735554	+	792.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15243.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.57	1.38	5.55	5.4	2.8	6.43	3.17	5.75	2.5
Merged-chr2-78050081-3	chr2	78049587	78050587	+	792.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	9.72	13.36	13.87	14.84	14.0	23.31	12.67	9.73	12.49
Merged-chr13-81107652-2	chr13	81107147	81108147	+	792.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	143573.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	14.87	11.52	9.25	28.34	27.52	9.65	19.01	9.73	9.37
Merged-chr17-26009664-2	chr17	26009158	26010158	+	792.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162868, intron 5 of 13)	intron (NM_001162868, intron 5 of 13)	12202.0	NM_153140	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	3.43	2.3	2.77	2.02	2.33	12.06	2.11	0.44	6.25
Merged-chr4-147922930-2	chr4	147922430	147923430	+	792.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 10 of 18)	intron (NM_011122, intron 10 of 18)	13846.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	18.88	23.04	33.3	25.64	17.26	28.13	43.3	30.07	29.98
Merged-chr5-65984250-3	chr5	65983758	65984758	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17134.0	NM_001081104	231252.0	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	16.59	15.67	20.35	31.04	17.26	17.68	30.63	14.59	13.74
Merged-chr5-12160852-3	chr5	12160444	12161444	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-222222.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	21.74	23.04	17.57	14.84	27.52	28.94	29.57	29.63	22.48
Merged-chr14-77864272-3	chr14	77863764	77864764	+	792.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 1 of 5)	intron (NM_025384, intron 1 of 5)	10653.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	49.2	49.3	27.75	55.33	47.12	40.99	66.54	97.72	60.58
Merged-chr8-22928792-3	chr8	22928288	22929288	+	792.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 13 of 17)	intron (NM_001081149, intron 13 of 17)	-46048.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.0	9.22	3.7	7.42	1.4	8.84	7.39	3.54	8.12
Merged-chr7-25205530-3	chr7	25205029	25206029	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207677, intron 4 of 4)	intron (NM_207677, intron 4 of 4)	12196.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	14.3	8.75	2.77	13.49	16.33	5.63	10.56	8.4	3.75
Merged-chr1-53787547-3	chr1	53787045	53788045	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2330.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	23.45	27.65	28.67	21.59	34.52	36.17	32.74	25.65	46.22
Merged-chr14-55148660-3	chr14	55148169	55149169	+	792.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31734.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	14.3	15.21	12.95	18.89	14.0	28.13	19.01	12.82	19.36
Merged-chr7-136065898-2	chr7	136065397	136066397	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202427.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	4.58	3.69	3.7	4.05	6.06	8.04	2.11	2.21	3.75
Merged-chr7-118470647-2	chr7	118470153	118471153	+	792.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21322.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	1.14	3.23	1.85	2.02	5.6	8.04	11.62	8.4	15.61
Merged-chr5-17816367-2	chr5	17815857	17816857	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	19539.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	12.59	18.43	3.7	12.82	12.13	5.63	7.39	12.38	9.99
Merged-chr11-94070547-2	chr11	94070044	94071044	+	792.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025428, intron 4 of 26)	MLTR14|LTR|ERV1	26339.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.0	7.37	9.25	33.74	34.06	33.76	57.03	61.02	37.47
Merged-chr11-77411489-3	chr11	77411000	77412000	+	792.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 4 of 13)	intron (NM_001291190, intron 4 of 13)	-52413.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	21.17	17.51	14.8	20.92	15.86	17.68	28.52	8.84	9.99
Merged-chr10-51435856-3	chr10	51435341	51436341	+	792.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44771.0	NM_008147	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	6.29	10.14	12.95	12.82	8.4	36.97	9.51	20.34	23.73
Merged-chr5-117933028-3	chr5	117932538	117933538	+	792.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008712, intron 19 of 27)	intron (NM_008712, intron 19 of 27)	-43732.0	NM_145564	231670.0	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	1.72	3.23	0.0	2.02	2.8	4.82	2.11	0.0	3.75
Merged-chr1-59953067-2	chr1	59952563	59953563	+	792.674988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037725, intron 3 of 7)	intron (NM_001037725, intron 3 of 7)	40057.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	6.86	8.75	0.0	14.17	6.53	6.43	12.67	8.84	5.62
Merged-chr12-51828851-1	chr12	51828351	51829351	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144788, intron 1 of 42)	CpG	685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	359.82	405.95	245.11	317.12	415.66	274.9	311.57	281.22	203.6
Merged-chr10-128589830-3	chr10	128589315	128590315	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-314.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	3.43	4.15	4.62	1.35	5.13	3.22	3.17	4.42	3.75
Merged-chr3-149219926-3	chr3	149219437	149220437	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54800.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	22.88	25.34	20.35	26.31	22.86	20.9	12.67	10.17	6.25
Merged-chr5-105875623-1	chr5	105875123	105876123	+	792.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018759)	promoter-TSS (NM_018759)	-945.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	72.08	68.2	54.57	105.26	93.77	85.2	62.31	42.89	38.1
Merged-chr12-65154483-3	chr12	65153979	65154979	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172578, intron 5 of 13)	L2a|LINE|L2	18101.0	NM_172578	217653.0	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	5.15	6.45	3.7	8.1	9.33	12.06	4.22	11.5	2.5
Merged-chr12-32952642-3	chr12	32952144	32953144	+	792.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 2 of 5)	intron (NR_044986, intron 2 of 5)	1145.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	28.03	23.5	12.02	21.59	20.99	6.43	17.96	17.24	24.98
Merged-chr9-72528230-1	chr9	72527730	72528730	+	792.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045735, intron 1 of 2)	MTC|LTR|ERVL-MaLR	3628.0	NR_045735	75115.0	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	9.72	11.98	12.95	14.17	8.86	20.9	0.0	6.63	6.25
Merged-chr8-126789165-2	chr8	126788663	126789663	+	792.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59857.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	9.15	9.22	3.7	14.17	11.2	6.43	6.34	7.96	2.5
Merged-chr6-91682716-2	chr6	91682206	91683206	+	792.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1361.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	62.35	87.09	97.12	76.92	70.44	118.16	113.01	95.51	79.32
Merged-chr9-40766960-2	chr9	40766463	40767463	+	792.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-34310.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	14.87	20.74	10.17	14.17	12.13	12.86	8.45	3.1	3.75
Merged-chr1-151074636-3	chr1	151074129	151075129	+	792.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63405.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	36.04	25.8	14.8	16.87	20.53	20.09	23.24	28.74	29.35
Merged-chr3-61309378-2	chr3	61308886	61309886	+	792.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55121.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.43	5.07	3.7	8.1	3.73	12.06	8.45	17.24	16.86
Merged-chr7-118800296-2	chr7	118799807	118800807	+	792.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	55306.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	12.59	20.27	31.45	24.96	14.46	16.88	30.63	15.48	19.36
Merged-chr7-19342816-2	chr7	19342327	19343327	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2244.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	16.02	8.75	8.32	8.1	2.33	3.22	14.79	11.94	5.62
Merged-chr6-134947589-2	chr6	134947070	134948070	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	18478.0	NR_037955	381822.0	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	10.87	8.75	12.95	14.17	4.67	6.43	16.9	6.63	11.24
Merged-chr12-116462004-2	chr12	116461517	116462517	+	792.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133762, exon 29 of 29)	3' UTR (NM_133762, exon 29 of 29)	-23703.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	16.02	23.04	14.8	20.24	20.06	33.76	24.29	16.8	10.62
Merged-chr9-40269295-3	chr9	40268722	40269722	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178227)	promoter-TSS (NM_178227)	6.0	NM_001359700	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	2.29	3.69	0.0	2.7	1.87	0.0	6.34	4.86	4.37
Merged-chr6-137395251-3	chr6	137394759	137395759	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-15462.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	8.58	4.15	3.7	1.35	2.8	0.0	2.11	2.21	3.75
Merged-chr1-156735866-3	chr1	156735354	156736354	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16944.0	NM_145413	215015.0	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	5.72	6.91	0.0	10.8	6.06	13.66	2.11	4.42	1.87
Merged-chr12-112653348-3	chr12	112652842	112653842	+	792.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165894)	TTS (NM_001165894)	6009.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	5.72	4.15	1.85	8.77	1.4	9.65	6.34	3.1	3.12
Merged-chr18-79036159-1	chr18	79035659	79036659	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053099, intron 2 of 5)	intron (NM_053099, intron 2 of 5)	73232.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.86	4.61	1.85	3.37	2.8	1.61	2.11	2.21	5.0
Merged-chr16-21909081-1	chr16	21908581	21909581	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172821, intron 7 of 12)	intron (NM_172821, intron 7 of 12)	17112.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	20.59	17.51	3.7	31.71	27.06	9.65	31.69	35.82	13.12
Merged-chr2-150837718-1	chr2	150837218	150838218	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4852.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	46.91	60.82	50.87	87.04	76.51	103.69	33.8	57.48	20.61
Merged-chr2-143942824-1	chr2	143942324	143943324	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019771, exon 4 of 4)	3' UTR (NM_019771, exon 4 of 4)	27493.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	15.45	18.43	22.2	25.64	22.86	30.54	32.74	17.24	16.86
Merged-chr10-42268888-2	chr10	42268398	42269398	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	7844.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	40.04	38.71	44.4	52.63	34.99	64.3	76.05	60.58	32.48
Merged-chr16-38812692-2	chr16	38812193	38813193	+	792.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029042, intron 3 of 3)	B3A|SINE|B2	-12490.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	5.15	3.23	0.0	3.37	2.8	2.41	3.17	2.21	6.25
Merged-chr2-151000961-2	chr2	151000461	151001461	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	B3|SINE|B2	8437.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	7.44	5.07	4.62	7.42	4.67	4.82	4.22	5.31	2.5
Merged-chr4-49608988-2	chr4	49608487	49609487	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	1.14	8.75	9.25	2.7	3.27	8.84	3.17	3.1	1.25
Merged-chr10-118041256-1	chr10	118040756	118041756	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-100531.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	53.77	66.35	71.22	62.07	55.51	73.95	2.11	3.98	3.12
Merged-chr17-83846489-2	chr17	83845986	83846986	+	792.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025325, intron 1 of 9)	intron (NM_025325, intron 1 of 9)	304.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	12.59	4.15	3.7	8.77	1.87	0.0	4.22	2.65	1.25
Merged-chr13-5938161-1	chr13	5937661	5938661	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	76672.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.29	3.23	9.25	3.37	2.8	1.61	2.11	7.52	3.75
Merged-chr3-15264576-1	chr3	15264076	15265076	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67726.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.15	3.69	0.0	4.72	8.86	1.61	5.28	4.42	0.0
Merged-chrUn_JH584304-1428-1	chrUn_JH584304	928	1928	+	792.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58261.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	40.14	26.97	0.0
Merged-chr12-51870377-1	chr12	51869877	51870877	+	792.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-40841.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	16.02	18.89	30.52	21.59	27.99	29.74	5.28	3.98	5.0
Merged-chr9-123927417-3	chr9	123926903	123927903	+	792.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41289.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	235.69	223.48	179.44	268.54	216.93	225.86	228.14	244.96	113.04
Merged-chr9-52098804-3	chr9	52098290	52099290	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16833.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	4.58	1.38	1.85	5.4	1.4	3.22	2.11	2.21	0.0
Merged-chr2-6718327-3	chr2	6717813	6718813	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	3349.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	40.62	69.12	58.27	46.56	41.52	55.46	53.87	55.71	41.84
Merged-chr15-86216728-3	chr15	86216236	86217236	+	792.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	MLT1C|LTR|ERVL-MaLR	2277.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	52.06	48.38	58.27	43.86	32.66	36.17	43.3	41.56	23.11
Merged-chr5-64718979-3	chr5	64718487	64719487	+	792.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84536.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	32.61	44.7	51.8	37.11	37.79	53.85	34.85	30.95	24.36
Merged-chr10-80848720-2	chr10	80848219	80849219	+	792.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-4680.0	NM_001013758	237403.0	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	4.0	1.84	1.85	6.07	3.27	8.04	4.22	0.88	2.5
Merged-chr7-19118451-2	chr7	19117948	19118948	+	792.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1411.0	NM_175530	243867.0	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	6.86	1.38	1.85	0.67	1.87	3.22	6.34	5.75	8.12
Merged-chr2-102751141-3	chr2	102750610	102751610	+	792.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-4350.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	65.21	70.5	45.32	48.58	27.99	52.25	43.3	52.62	48.09
Merged-chr12-52701376-2	chr12	52700865	52701865	+	792.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	1982.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	4.58	0.92	5.55	9.45	3.27	9.65	9.51	3.54	11.24
Merged-chr18-32408002-2	chr18	32407531	32408531	+	792.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 2 of 17)	intron (NM_001360876, intron 2 of 17)	-29747.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	27.46	19.35	37.0	22.27	16.79	29.74	36.97	34.49	16.24
Merged-chr12-5213913-2	chr12	5213424	5214424	+	792.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	161758.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.29	4.61	5.55	4.05	5.6	4.02	6.34	7.52	7.49
Merged-chr11-34098642-2	chr11	34098137	34099137	+	792.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155520)	promoter-TSS (NR_155520)	-83.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	3.43	1.38	7.4	13.49	3.27	3.22	1.06	1.33	5.62
Merged-chr18-67116118-3	chr18	67115601	67116601	+	792.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177137, intron 1 of 11)	intron (NM_177137, intron 1 of 11)	-17459.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	1.72	1.38	0.0	1.35	2.33	0.0	4.22	0.0	1.25
Merged-chr10-89453259-1	chr10	89452759	89453759	+	792.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9292.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	10.3	3.23	9.25	20.92	14.46	15.27	10.56	6.63	9.99
Merged-chr9-124012865-3	chr9	124012368	124013368	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9103.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	88.67	79.72	34.22	76.92	81.64	49.03	50.7	59.69	41.84
Merged-chr1-106883816-4	chr1	106883267	106884267	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360853)	TTS (NM_001360853)	22592.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	13.73	17.97	8.32	25.64	30.32	28.94	7.39	16.36	7.49
Merged-chr15-94680868-3	chr15	94680378	94681378	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	RMER1A|Other|Other	51693.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	4.58	5.07	8.32	15.52	17.73	9.65	49.64	50.85	32.48
Merged-chr17-33778983-1	chr17	33778483	33779483	+	792.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020581, intron 3 of 6)	intron (NM_020581, intron 3 of 6)	2592.0	NM_020581	57875.0	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	39.47	13.36	23.12	46.56	30.79	32.15	12.67	14.15	20.61
Merged-chr14-54448114-1	chr14	54447614	54448614	+	792.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16033.0	NM_022993	65107.0	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	9.72	3.23	1.85	4.72	0.93	2.41	11.62	2.21	5.62
Merged-chr2-27721258-3	chr2	27720780	27721780	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	10697.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	50.34	56.22	62.9	51.95	40.59	65.11	49.64	43.33	36.22
Merged-chr19-6857557-3	chr19	6857046	6858046	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081291, intron 2 of 26)	intron (NM_001081291, intron 2 of 26)	665.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	108.69	48.84	82.32	100.53	38.72	64.3	170.05	86.22	69.32
Merged-chr4-134622826-3	chr4	134622324	134623324	+	792.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	ORR1D2|LTR|ERVL-MaLR	-54973.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	28.6	17.51	28.67	22.27	20.53	16.08	14.79	12.82	16.24
Merged-chr7-118535620-3	chr7	118535116	118536116	+	792.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172476)	TTS (NM_172476)	-2260.0	NM_009940	12850.0	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	42.9	48.84	21.27	36.43	25.66	46.62	89.78	95.95	28.1
Merged-chr14-105895250-3	chr14	105894780	105895780	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011897, intron 1 of 1)	CpG	1539.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	7.44	4.61	8.32	9.45	3.27	4.82	9.51	1.77	1.25
Merged-chr5-3247484-3	chr5	3246977	3247977	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96416.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.86	5.99	7.4	5.4	7.46	4.02	6.34	2.21	8.12
Merged-chr2-60418276-3	chr2	60417776	60418776	+	792.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008867, exon 30 of 30)	3' UTR (NM_008867, exon 30 of 30)	6751.0	NR_046065	100039176.0	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	-	predicted gene 13580	ncRNA	5.72	3.23	5.55	3.37	0.93	0.0	5.28	2.65	4.37
Merged-chr6-83654789-2	chr6	83654283	83655283	+	792.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 2 of 6)	intron (NM_016751, intron 2 of 6)	1333.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	103.54	114.74	55.5	116.73	164.68	153.52	172.16	166.7	74.94
Merged-chr10-84554654-2	chr10	84554163	84555163	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1325.0	NR_040658	442847.0	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	15.45	20.27	23.12	16.87	17.26	36.17	17.96	33.6	15.61
Merged-chr4-55567436-2	chr4	55566924	55567924	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34949.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.15	3.23	5.55	4.72	5.6	4.82	6.34	2.65	1.87
Merged-chr12-73968348-1	chr12	73967848	73968848	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178392, exon 3 of 10)	exon (NM_178392, exon 3 of 10)	3818.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	40.04	53.45	40.7	34.41	42.92	56.27	45.42	27.86	47.46
Merged-chr9-77858636-2	chr9	77858134	77859134	+	792.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-58731.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	3.43	5.53	1.85	5.4	6.06	8.84	10.56	9.73	3.75
Merged-chr3-9251465-3	chr3	9251034	9252034	+	792.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177660, exon 1 of 6)	exon (NM_177660, exon 1 of 6)	967.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	22.88	5.07	7.4	35.09	13.06	12.86	10.56	5.31	7.49
Merged-chrX-99603898-1	chrX	99603398	99604398	+	792.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133163.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	3.43	0.46	1.85	5.4	1.4	3.22	4.22	0.0	3.12
Merged-chr11-54464788-1	chr11	54464288	54465288	+	792.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	26609.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	36.61	55.29	30.52	30.36	29.39	37.78	48.58	29.18	23.11
Merged-chr2-163100679-3	chr2	163100177	163101177	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11076.0	NM_026630	68236.0	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	17.16	28.11	5.55	13.49	13.53	10.45	5.28	2.65	5.62
Merged-chr12-100006850-3	chr12	100006355	100007355	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	ORR1D2|LTR|ERVL-MaLR	42356.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	59.49	51.15	45.32	90.41	75.11	58.68	41.19	55.71	22.48
Merged-chr19-10795198-3	chr19	10794698	10795698	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009852, intron 6 of 12)	intron (NM_009852, intron 6 of 12)	34860.0	NM_001037801	12511.0	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	11.44	4.61	1.85	4.72	3.27	0.0	4.22	0.88	5.62
Merged-chr11-77335245-1	chr11	77334745	77335745	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 2 of 14)	MTD|LTR|ERVL-MaLR	-13035.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	6.86	6.45	9.25	2.7	4.2	6.43	3.17	3.98	5.0
Merged-chr6-135193135-1	chr6	135192635	135193635	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040296, exon 5 of 5)	non-coding (NR_040296, exon 5 of 5)	4655.0	NR_040296	100502888.0	Mm.437844	NR_040296	ENSMUSG00000108239	Gm19434	-	predicted gene, 19434	ncRNA	5.15	4.15	5.55	7.42	7.93	4.82	2.11	1.77	9.99
Merged-chr1-82787582-2	chr1	82787093	82788093	+	792.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19137.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	4.0	2.3	0.0	6.75	5.6	3.22	2.11	0.0	0.0
Merged-chr3-133758681-3	chr3	133758127	133759127	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-214237.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	21.17	11.98	10.17	14.17	10.73	12.86	6.34	15.48	10.62
Merged-chr8-128060088-1	chr8	128059588	128060588	+	792.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	218137.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.72	2.3	3.7	4.05	2.8	3.22	4.22	4.42	6.25
Merged-chr1-74964676-3	chr1	74964174	74965174	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13002.0	NM_010544	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	1.72	2.3	1.85	4.72	2.33	0.0	1.06	3.1	2.5
Merged-chr12-69462136-3	chr12	69461647	69462647	+	792.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13403.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	49.2	28.57	24.05	51.28	47.58	55.46	39.08	34.05	26.23
Merged-chr3-69756703-2	chr3	69756194	69757194	+	792.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34639.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	3.43	4.15	5.55	4.05	2.33	1.61	1.06	2.65	7.49
Merged-chr3-85971086-2	chr3	85970597	85971597	+	792.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	31394.0	NM_001001650	368202.0	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	1.72	0.0	0.0	3.37	0.93	7.23	5.28	0.44	8.74
Merged-chr5-17878655-2	chr5	17878134	17879134	+	792.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	10325.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	13.73	15.21	1.85	13.49	14.46	20.09	14.79	15.48	13.74
Merged-chr9-114394921-2	chr9	114394426	114395426	+	792.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4214.0	NM_019922	56693.0	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	15.45	16.13	23.12	34.41	24.72	1.61	30.63	21.67	19.98
Merged-chr11-116021481-4	chr11	116020967	116021967	+	792.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008211)	TTS (NM_008211)	3037.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	64.07	47.92	38.85	49.25	23.79	24.11	28.52	38.91	18.11
Merged-chr13-106829789-3	chr13	106829287	106830287	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360897, intron 28 of 30)	intron (NM_001360897, intron 28 of 30)	107171.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	8.58	4.61	4.62	9.45	7.0	4.82	2.11	0.88	9.99
Merged-chr1-138976122-3	chr1	138975632	138976632	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	-1525.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	13.16	12.44	1.85	18.89	13.53	10.45	23.24	13.71	8.74
Merged-chr11-86634589-3	chr11	86634067	86635067	+	792.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	intron (NM_001356531, intron 7 of 11)	36708.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	41.19	32.72	41.62	33.06	27.06	36.17	48.58	40.24	16.86
Merged-chr2-30447414-2	chr2	30446915	30447915	+	792.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_138748, exon 10 of 10)	3' UTR (NM_138748, exon 10 of 10)	26784.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	4.0	0.46	0.0	41.16	33.59	45.82	32.74	31.84	34.97
Merged-chr15-101975701-2	chr15	101975189	101976189	+	792.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21402.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	115.55	123.95	160.94	122.12	85.37	193.71	175.33	151.66	114.91
Merged-chr1-120074815-5	chr1	120074376	120075376	+	792.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1096.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	216.81	314.72	257.14	228.73	262.64	258.02	389.73	451.01	195.48
Merged-chr5-24578771-3	chr5	24578219	24579219	+	792.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1252.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	20.59	33.64	31.45	37.11	41.99	44.21	62.31	39.8	51.84
Merged-chr6-17734266-3	chr6	17733771	17734771	+	792.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	RMER1C|Other|Other	-9321.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	3.43	5.99	1.85	6.75	9.8	8.04	7.39	3.1	6.25
Merged-chr11-115081101-3	chr11	115080614	115081614	+	792.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-10317.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	20.59	24.42	20.35	12.14	5.6	9.65	8.45	8.4	7.49
Merged-chr11-98943914-1	chr11	98943414	98944414	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	4203.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	121.28	108.28	59.2	83.66	62.98	62.7	92.94	91.97	76.19
Merged-chr19-16781678-1	chr19	16781178	16782178	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173028)	promoter-TSS (NM_173028)	-745.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	34.9	35.48	45.32	31.71	28.92	32.96	34.85	34.05	26.85
Merged-chr8-36549287-1	chr8	36548787	36549787	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	60096.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	1.72	1.84	5.55	3.37	3.73	1.61	0.0	0.88	4.37
Merged-chr15-34398874-1	chr15	34398374	34399374	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 6 of 18)	intron (NM_001358780, intron 6 of 18)	-41002.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	9.15	2.3	5.55	7.42	8.86	1.61	3.17	1.77	3.75
Merged-chr8-120720594-1	chr8	120720094	120721094	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15764.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	29.75	21.2	16.65	23.62	10.73	34.56	22.18	24.76	14.99
Merged-chr8-53449557-1	chr8	53449057	53450057	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62145.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	6.29	5.53	3.7	7.42	4.67	1.61	2.11	8.4	3.12
Merged-chr5-140736313-2	chr5	140735777	140736777	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	12150.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	237.97	270.48	160.94	244.92	267.31	184.07	157.37	201.63	46.84
Merged-chrX-109104234-1	chrX	109103734	109104734	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	B3|SINE|B2	8827.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	10.87	8.29	5.55	12.82	5.13	17.68	12.67	7.07	11.87
Merged-chr10-29445294-3	chr10	29444784	29445784	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82842.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	6.86	8.29	7.4	2.7	6.06	5.63	8.45	1.77	3.75
Merged-chr4-40202411-1	chr4	40201911	40202911	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	37414.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	8.01	7.83	9.25	6.75	5.6	22.51	6.34	6.63	13.74
Merged-chr14-20836095-1	chr14	20835595	20836595	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008873)	promoter-TSS (NM_008873)	-567.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	72.08	60.36	32.37	64.1	49.45	22.51	77.1	63.67	21.23
Merged-chr17-56338002-1	chr17	56337502	56338502	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11952.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	5.72	7.37	9.25	4.72	2.8	4.82	8.45	13.71	5.0
Merged-chr13-43112866-1	chr13	43112366	43113366	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-9973.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	17.73	15.21	14.8	13.49	13.06	22.51	7.39	9.29	6.87
Merged-chr18-9743412-1	chr18	9742912	9743912	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	35764.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	12.59	4.61	9.25	18.22	15.39	31.35	5.28	1.77	1.25
Merged-chr13-98947397-1	chr13	98946897	98947897	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21013.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	21.17	32.25	25.9	43.86	38.72	32.15	35.91	22.99	13.12
Merged-chr3-152569357-2	chr3	152568852	152569852	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355635, intron 6 of 8)	intron (NM_001355635, intron 6 of 8)	-97561.0	NR_040386	99542.0	Mm.394921	NR_040386	ENSMUSG00000097745	AI115009	-	expressed sequence AI115009	ncRNA	16.59	5.53	8.32	18.22	11.66	10.45	12.67	7.52	8.74
Merged-chr5-63837264-1	chr5	63836764	63837764	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	24769.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.15	4.61	3.7	7.42	11.2	5.63	10.56	7.07	6.87
Merged-chr15-86135516-3	chr15	86135047	86136047	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001205353, exon 19 of 19)	3' UTR (NM_001205353, exon 19 of 19)	-50181.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	0.0	1.38	0.92	4.05	1.87	4.02	2.11	3.1	6.87
Merged-chr14-66185056-2	chr14	66184546	66185546	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 5 of 30)	intron (NM_001162366, intron 5 of 30)	28778.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	49.77	36.86	48.1	20.24	25.66	11.25	88.72	61.9	26.85
Merged-chr13-92354072-2	chr13	92353576	92354576	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010049)	promoter-TSS (NM_010049)	-707.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	30.32	32.25	47.17	24.96	28.92	28.94	39.08	40.68	13.12
Merged-chr2-129603701-1	chr2	129603201	129604201	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	8239.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	53.2	49.3	37.92	47.23	29.86	33.76	62.31	49.96	28.73
Merged-chr14-77903885-1	chr14	77903385	77904385	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178825)	promoter-TSS (NM_178825)	-354.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	125.85	160.81	110.07	136.97	125.49	82.79	167.93	267.95	128.65
Merged-chr11-35693299-1	chr11	35692799	35693799	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011412, intron 32 of 35)	intron (NM_011412, intron 32 of 35)	-76196.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.43	2.76	1.85	1.35	1.87	1.61	4.22	1.77	4.37
Merged-chr12-28743734-1	chr12	28743234	28744234	+	792.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 2 of 11)	L1MA9|LINE|L1	6660.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0.57	3.69	11.1	4.05	0.47	1.61	20.07	24.32	12.49
Merged-chr17-43073000-1	chr17	43072500	43073500	+	792.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 4 of 5)	intron (NM_178589, intron 4 of 5)	56445.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	36.04	35.02	43.47	49.25	32.19	49.03	3.17	7.07	6.87
Merged-chr19-3325139-3	chr19	3324619	3325619	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	1818.0	NM_013495	12894.0	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	161.89	179.25	199.79	176.1	216.93	176.83	148.92	173.77	124.91
Merged-chr6-88940721-1	chr6	88940221	88941221	+	792.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	38470.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	2.86	1.84	0.0	3.37	1.4	1.61	2.11	0.44	5.0
Merged-chrX-38456006-3	chrX	38455497	38456497	+	791.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	463.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	183.63	165.88	127.64	153.84	162.81	112.53	183.78	220.64	95.55
Merged-chr13-13526117-3	chr13	13525617	13526617	+	791.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64292.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	4.0	4.15	1.85	7.42	4.67	1.61	4.22	6.63	6.25
Merged-chr17-13817943-3	chr17	13817444	13818444	+	791.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 5 of 33)	intron (NR_151731, intron 5 of 33)	-56550.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	5.72	5.99	7.4	3.37	3.73	1.61	4.22	2.65	3.75
Merged-chr6-32183919-3	chr6	32183402	32184402	+	791.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 22 of 31)	intron (NM_175750, intron 22 of 31)	133614.0	NM_029587	76382.0	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	33.18	43.77	27.75	58.7	57.85	41.8	30.63	22.55	20.61
Merged-chr8-108759885-3	chr8	108759392	108760392	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	45248.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	13.16	6.91	9.25	11.47	6.06	5.63	2.11	4.42	14.36
Merged-chr4-83234671-3	chr4	83234168	83235168	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	89521.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	32.61	26.26	17.57	31.04	27.99	28.13	51.75	64.11	29.35
Merged-chr11-69629005-3	chr11	69628497	69629497	+	791.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_011814	23879.0	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	80.09	82.94	56.42	72.19	63.45	61.89	101.39	144.15	56.21
Merged-chr1-119648594-3	chr1	119648084	119649084	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145506, intron 1 of 24)	CpG	416.0	NM_001113416	226352.0	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	8.01	4.61	24.05	16.19	4.2	9.65	6.34	4.42	6.87
Merged-chr18-38186054-3	chr18	38185565	38186565	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	23697.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	88.67	62.67	61.97	51.95	40.12	57.07	67.6	63.67	39.35
Merged-chr17-21474867-3	chr17	21474376	21475376	+	791.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-14112.0	NM_013843	24132.0	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	25.74	26.73	22.2	28.34	16.79	26.53	43.3	31.84	26.23
Merged-chr7-83600137-2	chr7	83599634	83600634	+	791.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 8 of 22)	intron (NM_177695, intron 8 of 22)	15203.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.58	3.69	1.85	2.7	1.87	4.82	5.28	4.86	1.25
Merged-chr2-156725511-2	chr2	156725041	156726041	+	791.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	4262.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	41.19	24.42	25.9	29.01	28.46	26.53	27.46	22.99	24.36
Merged-chr9-47627047-3	chr9	47626554	47627554	+	791.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96702.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	124.14	129.48	77.7	138.32	70.44	73.95	133.08	117.17	70.57
Merged-chr7-64277138-2	chr7	64276636	64277636	+	791.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G|LTR|ERVL-MaLR	-10534.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	2.86	5.53	16.65	17.54	15.39	3.22	7.39	2.21	9.99
Merged-chr5-67892384-2	chr5	67891874	67892874	+	791.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44943.0	NM_001038999	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	16.02	10.6	37.0	13.49	7.0	16.08	23.24	15.92	11.24
Merged-chr15-83415534-2	chr15	83415035	83416035	+	791.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	17315.0	NM_011862	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	1.72	5.07	5.55	4.72	4.2	3.22	4.22	2.21	2.5
Merged-chr6-127108426-1	chr6	127107926	127108926	+	791.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1126.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	6.86	3.69	3.7	13.49	13.53	6.43	4.22	3.98	5.0
Merged-chr2-116817840-3	chr2	116817340	116818340	+	791.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60851.0	NM_001355572	67356.0	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	6.29	7.83	1.85	5.4	6.53	4.82	4.22	8.84	2.5
Merged-chr18-62095735-3	chr18	62095207	62096207	+	791.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER103C|DNA|hAT-Charlie	84274.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	31.46	28.11	28.67	32.39	23.33	20.09	20.07	16.8	10.62
Merged-chr3-87214684-2	chr3	87214184	87215184	+	791.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39937.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	24.03	21.66	11.1	33.06	27.06	16.08	48.58	77.82	30.6
Merged-chr16-28929134-3	chr16	28928702	28929702	+	791.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	CpG	496.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	10.87	11.06	5.55	15.52	4.2	9.65	8.45	4.42	1.25
Merged-chr1-91087134-2	chr1	91086630	91087630	+	791.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310732, intron 9 of 24)	intron (NM_001310732, intron 9 of 24)	33686.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	13.16	8.29	5.55	9.45	7.46	11.25	15.84	11.05	7.49
Merged-chr7-101971273-4	chr7	101970817	101971817	+	791.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133947, intron 1 of 24)	intron (NM_133947, intron 1 of 24)	1474.0	NM_133947	101706.0	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	124.14	137.31	123.02	109.3	107.3	147.9	140.47	127.79	98.05
Merged-chr13-18794631-3	chr13	18794128	18795128	+	791.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77336.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	44.62	44.24	39.77	45.21	33.12	25.72	40.14	44.22	26.23
Merged-chr1-161166399-1	chr1	161165899	161166899	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028664, intron 6 of 6)	intron (NM_028664, intron 6 of 6)	-7085.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	5.72	1.38	5.55	6.75	5.13	5.63	3.17	5.31	3.75
Merged-chr3-79088657-3	chr3	79088151	79089151	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310536, exon 12 of 24)	exon (NM_001310536, exon 12 of 24)	56236.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	60.07	61.28	26.82	63.42	41.05	49.03	42.25	49.08	23.11
Merged-chr4-35096221-3	chr4	35095738	35096738	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-55817.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	33.18	26.73	17.57	60.72	51.78	24.92	12.67	16.36	11.24
Merged-chr3-100422607-1	chr3	100422107	100423107	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3798.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.58	5.07	7.4	2.7	0.93	1.61	2.11	0.88	2.5
Merged-chrX-75128707-3	chrX	75128218	75129218	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008621, intron 1 of 11)	intron (NM_008621, intron 1 of 11)	2298.0	NM_008621	17524.0	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	46.34	74.19	27.75	53.3	40.12	17.68	61.26	60.58	26.85
Merged-chr3-37421359-1	chr3	37420859	37421859	+	791.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021343, intron 1 of 15)	intron (NM_021343, intron 1 of 15)	1409.0	NM_021343	57815.0	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	45.76	65.89	24.97	45.88	45.72	34.56	55.98	79.15	33.72
Merged-chr13-110363925-3	chr13	110363425	110364425	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6753.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	4.58	3.69	3.7	7.42	5.13	6.43	7.39	11.05	3.75
Merged-chr9-120502207-3	chr9	120501728	120502728	+	791.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9622.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	4.58	5.07	0.0	6.07	6.06	1.61	1.06	3.98	2.5
Merged-chr1-95449930-2	chr1	95449433	95450433	+	791.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136305.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	20.02	47.46	39.77	27.66	19.59	28.94	28.52	33.6	31.85
Merged-chr3-127803015-2	chr3	127802516	127803516	+	791.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12359.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	20.59	14.75	12.95	16.19	11.66	12.86	20.07	12.82	5.62
Merged-chr3-144692208-3	chr3	144691705	144692705	+	791.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	28130.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	18.31	27.19	13.87	21.59	20.06	13.66	38.02	20.78	17.49
Merged-chr8-9008334-3	chr8	9007845	9008845	+	791.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	123943.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	5.72	3.69	5.55	1.35	2.8	3.22	7.39	1.77	7.49
Merged-chr17-26069485-3	chr17	26068989	26069989	+	791.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162868)	promoter-TSS (NM_001162868)	-312.0	NM_001162869	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	22.31	10.14	11.1	40.48	16.33	27.33	23.24	14.59	11.87
Merged-chr14-52141432-3	chr14	52140918	52141918	+	791.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023879, intron 14 of 24)	intron (NM_023879, intron 14 of 24)	30515.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	23.45	13.36	3.7	17.54	20.99	6.43	31.69	23.43	16.86
Merged-chrX-106035889-2	chrX	106035420	106036420	+	791.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	8696.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	17.73	13.82	7.4	14.84	12.6	4.02	14.79	8.4	6.87
Merged-chr5-17975428-3	chr5	17974922	17975922	+	791.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	12852.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	4.0	7.37	3.7	8.1	6.53	2.41	5.28	0.88	2.5
Merged-chr7-89216401-3	chr7	89215902	89216902	+	791.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	L1_Rod|LINE|L1	122385.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	117.27	152.98	113.77	155.19	151.15	136.64	136.25	171.56	103.05
Merged-chr11-104367099-3	chr11	104366579	104367579	+	791.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 5 of 14)	B4A|SINE|B4	75212.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	42.33	48.84	15.72	67.47	55.05	61.89	43.3	54.39	25.61
Merged-chr16-77602764-3	chr16	77602259	77603259	+	791.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3102.0	NR_029728	387246.0		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	5.72	6.45	1.85	1.35	5.13	1.61	6.34	5.75	4.37
Merged-chr4-62480698-1	chr4	62480198	62481198	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138653, intron 1 of 6)	intron (NM_138653, intron 1 of 6)	631.0	NM_138653	192120.0	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	26.31	17.51	0.0	12.14	10.73	4.02	11.62	10.17	6.87
Merged-chr14-103013345-2	chr14	103012842	103013842	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045657, intron 2 of 2)	intron (NR_045657, intron 2 of 2)	20461.0	NR_045657	71264.0	Mm.399572	NR_045657	ENSMUSG00000114980	4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	4.0	6.45	0.0	8.1	2.33	4.82	11.62	5.75	7.49
Merged-chr1-106809935-2	chr1	106809450	106810450	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-13225.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	9.72	4.61	2.77	6.75	2.8	4.02	0.0	1.77	6.25
Merged-chr5-139197832-2	chr5	139197313	139198313	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2824.0	NM_001256115	77053.0	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	73.22	66.35	75.85	89.06	58.31	106.9	103.51	79.59	47.46
Merged-chr3-100596523-2	chr3	100596030	100597030	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010763, intron 8 of 12)	intron (NM_010763, intron 8 of 12)	88943.0	NM_010763	17156.0	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	9.72	4.15	7.4	3.37	8.86	8.04	2.11	7.07	3.75
Merged-chr9-3002377-2	chr9	3001894	3002894	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	36349.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	62.35	459.86	163.72	81.64	527.62	196.93	174.27	229.93	198.6
Merged-chr4-149415985-1	chr4	149415485	149416485	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 1 of 26)	intron (NM_022022, intron 1 of 26)	10646.0	NM_022022	63958.0	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	18.31	6.91	17.57	16.87	13.06	26.53	15.84	4.86	12.49
Merged-chr2-103972001-2	chr2	103971509	103972509	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	1722.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	16.59	20.27	27.75	19.57	16.79	12.06	11.62	15.03	16.86
Merged-chr15-102225521-3	chr15	102224980	102225980	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	6455.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	9.72	5.99	22.2	5.4	9.33	12.06	8.45	9.29	11.24
Merged-chr9-37047316-2	chr9	37046853	37047853	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	99969.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	11.44	8.75	12.02	8.77	7.46	9.65	2.11	2.21	0.0
Merged-chr11-107102955-2	chr11	107102404	107103404	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359590, intron 2 of 27)	intron (NM_001359590, intron 2 of 27)	29018.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	13.16	11.98	20.35	16.19	9.8	9.65	11.62	9.29	10.62
Merged-chr8-79450343-2	chr8	79449824	79450824	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50856.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	9.72	17.97	9.25	14.17	15.86	20.9	20.07	18.57	10.62
Merged-chr2-79372649-2	chr2	79372156	79373156	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048176, intron 2 of 12)	L2|LINE|L2	56332.0	NM_001048176	228094.0	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	4.0	2.3	0.92	4.72	4.2	5.63	4.22	0.44	2.5
Merged-chr18-74214000-1	chr18	74213500	74214500	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-2212.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	27.46	19.35	8.32	37.11	23.33	34.56	39.08	29.18	19.36
Merged-chr9-85592793-1	chr9	85592293	85593293	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	156541.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.0	5.07	3.7	6.07	4.2	1.61	2.11	2.21	3.75
Merged-chr15-77839742-2	chr15	77839268	77840268	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	2407.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	112.12	117.5	113.77	82.32	60.65	107.71	121.46	114.08	113.66
Merged-chr11-58948772-2	chr11	58948269	58949269	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030082)	promoter-TSS (NM_030082)	-142.0	NM_030082	78303.0	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	3.43	3.23	3.7	9.45	4.2	0.0	8.45	13.27	18.11
Merged-chr3-108286390-2	chr3	108285892	108286892	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	2328.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	12.59	13.36	24.97	10.8	6.06	10.45	2.11	2.21	1.87
Merged-chr15-8643275-2	chr15	8642755	8643755	+	791.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 6 of 9)	(A)n|Simple_repeat|Simple_repeat	67552.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	12.01	5.99	0.0	6.75	6.53	6.43	12.67	12.82	5.0
Merged-chr13-105380143-2	chr13	105379576	105380576	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-63617.0	NM_008308	15550.0	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	7.44	2.76	15.72	8.1	4.2	1.61	5.28	3.1	2.5
Merged-chr2-129066530-1	chr2	129066030	129067030	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027192, intron 1 of 6)	intron (NM_027192, intron 1 of 6)	583.0	NM_027192	69737.0	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	24.03	20.27	23.12	44.53	31.26	43.4	22.18	24.32	10.62
Merged-chr5-21611217-1	chr5	21610717	21611717	+	791.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 7 of 20)	L1M2|LINE|L1	34388.0	NM_001199632	320118.0	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	3.43	7.37	3.7	1.35	7.46	5.63	6.34	0.88	5.0
Merged-chr19-45545149-3	chr19	45544651	45545651	+	791.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15413.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	3.43	3.23	5.55	7.42	4.2	3.22	2.11	3.98	7.49
Merged-chr9-110478791-3	chr9	110478300	110479300	+	791.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163569, intron 1 of 20)	intron (NM_001163569, intron 1 of 20)	1806.0	NM_001163569	16578.0	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	26.89	33.64	28.67	31.71	20.99	28.94	28.52	25.2	28.1
Merged-chr19-26506962-3	chr19	26506476	26507476	+	791.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-98184.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	10.87	6.45	1.85	12.82	4.67	6.43	5.28	2.65	9.37
Merged-chr7-132929931-2	chr7	132929431	132930431	+	791.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1211.0	NM_207302	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	21.74	26.73	18.5	19.57	22.86	21.7	35.91	22.11	24.36
Merged-chr1-39925091-2	chr1	39924605	39925605	+	791.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	24192.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	9.15	5.99	0.0	12.82	4.67	1.61	7.39	4.42	5.0
Merged-chr1-170218695-2	chr1	170218182	170219182	+	791.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3275.0	NM_010633	16589.0	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	2.29	2.76	0.0	4.05	3.27	1.61	0.0	2.21	9.99
Merged-chr17-5784925-3	chr17	5784425	5785425	+	791.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13732.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	38.9	42.39	21.27	42.51	41.05	24.11	48.58	53.06	24.98
Merged-chr5-105531183-2	chr5	105530683	105531683	+	791.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	11712.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	44.62	43.31	30.52	49.93	28.46	41.8	9.51	3.98	5.0
Merged-chr5-136623335-2	chr5	136622849	136623849	+	791.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-55859.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	8.58	4.61	4.62	4.05	2.33	4.82	2.11	0.88	3.75
Merged-chr7-38141930-3	chr7	38141418	38142418	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34428.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	1.72	4.61	5.55	2.02	2.33	0.8	2.11	0.0	3.75
Merged-chrX-48405248-1	chrX	48404748	48405748	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 14 of 14)	intron (NM_178782, intron 14 of 14)	57884.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	5.15	4.61	6.47	4.72	3.73	6.43	2.11	7.07	2.5
Merged-chr8-40151084-1	chr8	40150584	40151584	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135869.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.86	3.69	0.0	0.0	5.6	2.41	3.17	2.21	1.25
Merged-chr10-37139342-3	chr10	37138826	37139826	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008538)	promoter-TSS (NM_008538)	-400.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	109.26	129.94	89.72	92.44	83.51	120.57	107.73	114.96	86.18
Merged-chr12-99956610-3	chr12	99956125	99957125	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7874.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	22.31	16.59	23.12	10.12	21.46	26.53	14.79	10.17	12.49
Merged-chr3-9832886-1	chr3	9832386	9833386	+	791.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	793.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	43.48	52.53	31.45	33.74	43.39	37.78	66.54	92.41	63.08
Merged-chr14-120832461-3	chr14	120831966	120832966	+	791.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78728.0	NM_023579	70572.0	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5	importin 5	protein-coding	33.18	40.09	25.9	45.21	35.45	32.15	59.15	38.91	27.48
Merged-chr10-94359336-1	chr10	94358836	94359836	+	791.285706	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	47387.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	45.76	61.28	43.47	94.46	82.57	51.44	106.67	96.83	65.58
Merged-chr3-9656767-3	chr3	9656282	9657282	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46697.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.58	7.83	1.85	11.47	8.86	10.45	12.67	8.84	0.62
Merged-chr1-33916769-3	chr1	33916270	33917270	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	8545.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	33.75	46.54	46.25	41.83	22.86	28.13	38.02	29.18	26.23
Merged-chr9-67001291-3	chr9	67000805	67001805	+	791.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25821.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	2.86	1.84	0.92	5.4	0.93	1.61	4.22	1.33	1.25
Merged-chr16-24637977-2	chr16	24637466	24638466	+	791.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-83889.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	19.45	23.04	14.8	40.48	36.39	20.9	36.97	28.3	12.49
Merged-chr17-10394907-5	chr17	10394420	10395420	+	791.241638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61296.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	57.21	30.87	40.7	67.47	41.52	40.99	45.42	36.26	33.72
Merged-chr3-79178905-3	chr3	79178374	79179374	+	791.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32999.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	163.04	141.0	102.67	127.52	107.76	114.14	228.14	218.87	128.65
Merged-chr17-88257340-3	chr17	88256837	88257837	+	791.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131825.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	6.29	3.23	7.4	12.14	7.0	12.86	12.67	6.63	11.24
Merged-chr6-91153710-2	chr6	91153219	91154219	+	791.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3096.0	NM_144919	232232.0	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	3.43	0.92	0.0	3.37	0.93	0.8	4.22	2.65	1.25
Merged-chr3-93506097-3	chr3	93505585	93506585	+	791.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14411.0	NM_016740	20195.0	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	3.43	2.3	3.7	6.75	3.73	0.0	3.17	4.42	1.25
Merged-chr14-56576588-3	chr14	56576110	56577110	+	791.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145978, intron 1 of 34)	intron (NM_001145978, intron 1 of 34)	991.0	NM_001145978	328417.0	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	14.3	16.59	18.5	24.29	19.13	21.7	33.8	25.2	13.74
Merged-chr11-44601163-2	chr11	44600687	44601687	+	791.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44B|DNA|TcMar-Tigger	14870.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	8.01	7.83	10.17	10.12	9.33	4.82	5.28	12.38	3.75
Merged-chr10-60779880-2	chr10	60779390	60780390	+	791.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029770, intron 3 of 16)	intron (NM_029770, intron 3 of 16)	-27108.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.57	2.3	0.92	4.72	0.93	0.0	1.06	1.33	3.12
Merged-chr3-60472171-3	chr3	60471672	60472672	+	791.133301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001253713)	promoter-TSS (NM_001253713)	-658.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	50.91	61.75	43.47	50.6	59.71	49.83	55.98	81.8	50.59
Merged-chr11-57934475-3	chr11	57933956	57934956	+	791.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74608.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	2.86	2.76	5.55	2.02	1.4	1.61	2.11	0.0	1.25
Merged-chr3-82375455-2	chr3	82374969	82375969	+	791.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356457, intron 6 of 13)	intron (NM_001356457, intron 6 of 13)	17282.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	6.86	4.61	6.47	17.54	10.73	1.61	7.39	5.31	6.87
Merged-chr7-110268177-2	chr7	110267682	110268682	+	791.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 6 of 11)	intron (NM_009302, intron 6 of 11)	46479.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	8.01	12.9	18.5	16.19	9.8	12.86	17.96	12.38	6.25
Merged-chr15-53485444-2	chr15	53484954	53485954	+	791.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	128825.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	9.15	4.61	5.55	4.05	7.93	6.43	5.28	1.33	1.25
Merged-chr1-131566363-3	chr1	131565856	131566856	+	791.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR46B|LTR|ERVK	-32758.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	7.44	2.3	5.55	16.87	8.86	12.06	11.62	4.86	1.25
Merged-chr6-124415900-3	chr6	124415372	124416372	+	791.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175933)	promoter-TSS (NM_175933)	-17.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	76.08	108.75	59.2	70.17	77.91	45.82	82.38	92.41	53.71
Merged-chr6-142757731-3	chr6	142757237	142758237	+	791.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009908, intron 1 of 7)	intron (NM_009908, intron 1 of 7)	1051.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	60.64	83.4	37.92	74.22	79.77	49.03	51.75	71.19	37.47
Merged-chr3-108186605-3	chr3	108186099	108187099	+	791.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001287093, exon 1 of 3)	5' UTR (NM_001287093, exon 1 of 3)	310.0	NM_146137	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	8.01	5.53	7.4	9.45	0.47	16.08	16.9	1.33	3.75
Merged-chr12-113218070-3	chr12	113217565	113218565	+	791.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32162.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.0	1.38	9.25	4.72	2.8	1.61	3.17	2.21	1.25
Merged-chr2-170130624-1	chr2	170130124	170131124	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	CpG	596.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	251.7	188.92	215.51	198.37	128.29	150.31	216.52	184.38	146.76
Merged-chr10-25324153-1	chr10	25323653	25324653	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24990.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	6.29	5.07	5.55	6.75	1.4	4.02	2.11	3.54	1.25
Merged-chr15-57883924-1	chr15	57883424	57884424	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	8494.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	49.77	47.0	31.45	58.03	31.26	42.6	47.53	43.33	24.98
Merged-chr7-107707916-1	chr7	107707416	107708416	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357438, intron 3 of 20)	intron (NM_001357438, intron 3 of 20)	16073.0	NM_001357438	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	10.3	10.6	11.1	7.42	2.33	9.65	4.22	2.21	3.12
Merged-chr10-122559518-1	chr10	122559018	122560018	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10373.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	17.73	17.05	17.57	19.57	29.86	38.58	43.3	31.84	28.73
Merged-chr8-115697800-1	chr8	115697300	115698300	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9094.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	20.59	14.28	14.8	22.27	15.86	31.35	14.79	17.24	12.49
Merged-chr7-110910641-1	chr7	110910141	110911141	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	5656.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	22.31	25.34	12.95	16.19	17.73	20.09	16.9	16.36	28.1
Merged-chr11-63136393-1	chr11	63135893	63136893	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	3590.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	7.44	9.22	7.4	15.52	17.73	23.31	14.79	11.05	11.87
Merged-chr18-56573506-1	chr18	56573006	56574006	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-567.0	NM_001127338	110695.0	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	32.04	24.88	18.5	33.74	35.92	55.46	33.8	36.7	36.22
Merged-chr19-29418964-2	chr19	29418469	29419469	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	8050.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	205.37	214.73	136.89	256.39	196.87	173.62	243.98	281.22	96.8
Merged-chr2-46662052-1	chr2	46661552	46662552	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	965447.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.15	5.99	0.0	4.05	3.73	6.43	1.06	5.31	1.25
Merged-chr19-47890875-4	chr19	47890416	47891416	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25122.0	NM_026619	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	53.2	80.64	96.2	53.3	44.32	51.44	98.23	96.83	53.71
Merged-chr9-96396695-2	chr9	96396214	96397214	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32283.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	19.45	16.59	21.27	16.19	7.93	28.94	42.25	27.41	26.23
Merged-chr12-27303353-1	chr12	27302853	27303853	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39365.0	NM_009234	20666.0	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	1.72	1.38	1.85	1.35	3.73	3.22	0.0	1.33	2.5
Merged-chr10-44425048-1	chr10	44424548	44425548	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	33700.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	2.86	4.61	0.0	4.72	2.8	1.61	2.11	3.54	2.5
Merged-chr4-8912211-2	chr4	8911724	8912724	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	160900.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	204.22	264.03	135.97	189.6	179.61	191.3	252.43	379.82	179.86
Merged-chr1-138137928-1	chr1	138137428	138138428	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	ID_B1|SINE|B4	37198.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	61.78	63.59	29.6	48.58	35.92	41.8	53.87	32.72	36.22
Merged-chr1-60804253-1	chr1	60803753	60804753	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57865.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	7.44	11.06	13.87	12.14	14.46	17.68	8.45	14.59	18.11
Merged-chr5-34948958-2	chr5	34948463	34949463	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173402)	promoter-TSS (NM_173402)	-485.0	NM_173402	71729.0	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	16.02	9.22	9.25	12.14	14.46	27.33	17.96	16.36	6.87
Merged-chr14-79541819-1	chr14	79541319	79542319	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	26145.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	22.31	15.21	7.4	15.52	8.4	9.65	8.45	8.4	9.37
Merged-chr4-71252464-2	chr4	71251963	71252963	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-717535.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.29	10.14	11.1	6.75	6.06	4.82	6.34	4.86	2.5
Merged-chr7-64051225-1	chr7	64050725	64051725	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102610.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	14.87	8.75	6.47	10.12	12.6	3.22	7.39	5.31	3.75
Merged-chr10-31742604-1	chr10	31742104	31743104	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013411, intron 5 of 6)	intron (NM_001013411, intron 5 of 6)	-132879.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	2.86	1.84	4.62	1.35	6.06	3.22	1.06	3.98	0.62
Merged-chr15-84916798-1	chr15	84916298	84917298	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVL-B4-int|LTR|ERVL	-6630.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	4.0	4.15	2.77	6.75	11.2	9.65	3.17	3.98	1.25
Merged-chr18-67826200-2	chr18	67825713	67826713	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 14 of 45)	intron (NM_027556, intron 14 of 45)	26106.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	12.59	27.19	24.05	18.22	17.26	29.74	60.2	60.58	75.57
Merged-chr10-122988489-1	chr10	122987989	122988989	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-2765.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	8.01	12.44	13.87	7.42	8.86	12.06	9.51	12.82	8.12
Merged-chrUn_JH584304-57666-1	chrUn_JH584304	57166	58166	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003518, intron 2 of 6)	intron (NR_003518, intron 2 of 6)	2023.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	5.28	4.86	0.0
Merged-chr17-65749996-1	chr17	65749496	65750496	+	791.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	22756.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	2.29	4.61	3.7	4.05	4.2	3.22	46.47	55.27	21.86
Merged-chr8-61387854-1	chr8	61387354	61388354	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021506, intron 11 of 11)	intron (NM_021506, intron 11 of 11)	-98982.0	NR_045475	69279.0	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	2.86	5.99	0.0	7.42	2.33	4.82	6.34	1.77	3.75
Merged-chr11-64600551-2	chr11	64600067	64601067	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163893.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	3.43	3.69	0.0	7.42	4.67	9.65	0.0	3.54	7.49
Merged-chr18-56875389-2	chr18	56874931	56875931	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50117.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	12.01	23.5	37.0	11.47	6.06	20.09	4.22	6.63	8.74
Merged-chr17-35090160-2	chr17	35089643	35090643	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178592, intron 1 of 19)	intron (NM_178592, intron 1 of 19)	852.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	124.14	102.75	88.8	87.71	68.11	47.42	77.1	131.32	46.84
Merged-chr18-73752180-3	chr18	73751692	73752692	+	791.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053255, intron 1 of 3)	intron (NM_053255, intron 1 of 3)	2287.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	25.17	24.42	31.45	38.46	21.93	48.23	73.93	60.58	67.45
Merged-chr2-73313286-2	chr2	73312786	73313786	+	791.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025854)	promoter-TSS (NM_025854)	634.0	NM_001355711	74616.0	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	272.87	289.83	160.02	248.3	303.7	209.79	209.12	340.47	144.89
Merged-chr10-81434158-2	chr10	81433640	81434640	+	790.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6967.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	30.32	27.19	22.2	30.36	28.92	29.74	30.63	22.11	18.74
Merged-chr5-24261274-3	chr5	24260769	24261769	+	790.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3741.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	2.86	3.69	1.85	0.67	0.93	4.82	1.06	1.33	8.74
Merged-chr4-3759068-3	chr4	3758570	3759570	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	44106.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	6.29	3.69	0.0	10.12	3.73	1.61	10.56	24.32	3.75
Merged-chr17-34455889-3	chr17	34455383	34456383	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163855, intron 22 of 23)	intron (NM_001163855, intron 22 of 23)	20054.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	6.86	5.99	8.32	7.42	1.4	0.0	3.17	2.21	2.5
Merged-chr7-63908838-3	chr7	63908341	63909341	+	790.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-8016.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	35.47	53.91	89.72	72.19	48.52	93.24	51.75	73.84	51.21
Merged-chr18-84293719-3	chr18	84293194	84294194	+	790.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	205536.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	90.96	99.53	68.45	78.94	94.7	64.3	121.46	134.86	56.83
Merged-chr5-12383471-3	chr5	12382986	12383986	+	790.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028882, exon 1 of 18)	5' UTR (NM_028882, exon 1 of 18)	320.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	4.58	2.3	3.7	4.05	2.33	0.0	4.22	2.21	0.0
Merged-chr3-109130337-3	chr3	109129853	109130853	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	7204.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	16.02	11.98	9.25	6.07	13.06	6.43	29.57	10.61	7.49
Merged-chr9-106341481-3	chr9	106340988	106341988	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-27144.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	17.73	11.98	9.25	34.41	25.66	13.66	8.45	6.63	8.74
Merged-chr1-39576041-4	chr1	39575536	39576536	+	790.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033135, intron 1 of 6)	intron (NM_001033135, intron 1 of 6)	1311.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	84.09	120.26	70.3	98.51	92.37	102.88	115.12	124.25	79.32
Merged-chr13-20800793-3	chr13	20800320	20801320	+	790.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	6707.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	12.01	22.58	9.25	27.66	16.33	18.49	26.4	19.46	18.74
Merged-chr8-79680716-3	chr8	79680238	79681238	+	790.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31002.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	8.01	11.98	13.87	12.14	14.93	16.08	11.62	15.92	21.23
Merged-chr9-120915279-2	chr9	120914781	120915781	+	790.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040742)	promoter-TSS (NR_040742)	-31.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	6.29	1.84	0.0	6.75	7.0	19.29	1.06	0.88	2.5
Merged-chr9-53741190-3	chr9	53740694	53741694	+	790.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30341.0	NM_028060	72022.0	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	8.58	13.36	4.62	10.8	4.67	6.43	6.34	11.05	11.24
Merged-chr1-131246052-3	chr1	131245544	131246544	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313731)	promoter-TSS (NM_001313731)	-866.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	54.35	44.7	17.57	26.31	13.53	8.04	36.97	25.2	22.48
Merged-chr10-127479995-3	chr10	127479504	127480504	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-21682.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	21.17	44.24	15.72	35.09	24.72	40.19	31.69	33.16	22.48
Merged-chr13-109232081-3	chr13	109231584	109232584	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-92660.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.72	5.07	1.85	2.7	2.8	6.43	2.11	2.65	4.37
Merged-chr9-123525366-3	chr9	123524864	123525864	+	790.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4389.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	8.01	5.07	0.0	4.72	6.06	4.82	1.06	3.98	1.25
Merged-chr4-97767049-4	chr4	97766569	97767569	+	790.775024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-10557.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	18.31	14.28	5.55	23.62	13.06	18.49	15.84	16.8	12.49
Merged-chr9-113663661-3	chr9	113663156	113664156	+	790.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164678, intron 12 of 17)	B4A|SINE|B4	44603.0	NM_001164678	18571.0	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	12.01	8.75	4.62	14.84	9.33	16.08	12.67	12.38	7.49
Merged-chr10-126928348-2	chr10	126927849	126928849	+	790.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-26978.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	18.31	22.12	12.95	24.29	43.39	33.76	7.39	3.54	6.87
Merged-chr8-104436237-2	chr8	104435738	104436738	+	790.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013380, intron 4 of 12)	intron (NM_001013380, intron 4 of 12)	6809.0	NM_001013380	234663.0	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	14.3	5.07	18.5	4.72	3.73	4.82	2.11	2.21	10.62
Merged-chr2-72788972-2	chr2	72788481	72789481	+	790.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102348, intron 2 of 5)	intron (NR_102348, intron 2 of 5)	24736.0	NR_102348	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	15.45	15.67	9.25	6.07	4.67	0.0	44.36	47.75	32.48
Merged-chr4-132305451-3	chr4	132304962	132305962	+	790.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2106.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	68.65	63.59	76.77	76.92	86.77	69.93	141.53	170.68	57.46
Merged-chr11-70674699-3	chr11	70674162	70675162	+	790.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178116, exon 15 of 23)	exon (NM_178116, exon 15 of 23)	-5246.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	8.01	10.14	22.2	17.54	7.0	16.88	14.79	5.75	12.49
Merged-chr4-150002131-2	chr4	150001645	150002645	+	790.716675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	B3|SINE|B2	1091.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	22.88	8.75	17.57	15.52	13.53	11.25	16.9	13.27	7.49
Merged-chr1-169370920-1	chr1	169370420	169371420	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160544.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	6.86	8.75	7.4	14.17	10.26	9.65	12.67	6.19	6.87
Merged-chr7-109083325-1	chr7	109082825	109083825	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001038624)	promoter-TSS (NM_001038624)	-1.0	NM_178780	320360.0	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	2.86	3.69	7.4	11.47	8.4	14.47	6.34	3.1	5.0
Merged-chr15-73089710-3	chr15	73089215	73090215	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053068)	promoter-TSS (NM_053068)	-697.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	223.67	264.03	163.72	205.79	191.27	192.91	191.17	259.11	136.77
Merged-chr12-17691488-3	chr12	17690984	17691984	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	CpG	675.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	139.58	168.19	145.22	118.75	118.03	180.85	174.27	131.77	137.4
Merged-chr3-21963186-1	chr3	21962686	21963686	+	790.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113466.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	16.59	12.9	11.1	14.17	9.8	8.04	13.73	11.94	23.73
Merged-chr4-133201348-3	chr4	133200859	133201859	+	790.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5704.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	14.3	11.52	6.47	12.82	6.06	19.29	9.51	7.07	6.25
Merged-chr4-133625024-2	chr4	133624517	133625517	+	790.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	8412.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	9.15	8.75	9.25	14.84	13.53	9.65	0.0	2.21	5.62
Merged-chr10-67302535-3	chr10	67302028	67303028	+	790.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17247.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	19.45	5.07	5.55	12.14	6.06	4.02	9.51	5.75	5.0
Merged-chr11-116412611-3	chr11	116412103	116413103	+	790.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	CpG	429.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	76.66	36.86	59.2	113.35	53.18	46.62	143.64	48.2	50.59
Merged-chr18-6515082-3	chr18	6514587	6515587	+	790.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	1021.0	NM_007935	13831.0	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	55.49	88.47	45.32	54.65	68.11	45.01	80.27	63.23	54.33
Merged-chr1-156803419-3	chr1	156802950	156803950	+	790.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001159965)	TTS (NM_001159965)	-35573.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	6.86	5.07	5.55	3.37	1.87	3.22	2.11	4.86	1.25
Merged-chr12-41417819-2	chr12	41417319	41418319	+	790.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	68238.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.29	4.61	0.0	5.4	4.2	4.02	1.06	2.65	3.75
Merged-chr19-45076926-2	chr19	45076440	45077440	+	790.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001362398, exon 3 of 6)	exon (NM_001362398, exon 3 of 6)	853.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	5.15	2.3	7.4	8.1	3.27	4.02	2.11	2.65	0.0
Merged-chr15-62162154-3	chr15	62161647	62162647	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	57304.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	8.01	9.68	9.25	8.77	12.6	8.04	12.67	7.07	6.25
Merged-chr5-67814650-3	chr5	67814174	67815174	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009727, exon 2 of 36)	exon (NM_009727, exon 2 of 36)	32757.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	106.97	152.52	104.52	109.98	121.76	97.26	99.28	137.07	64.95
Merged-chr11-95354259-3	chr11	95353708	95354708	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	17190.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	161.32	164.5	65.67	182.85	183.8	147.09	170.05	244.96	121.16
Merged-chr4-152319017-3	chr4	152318440	152319440	+	790.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033489)	promoter-TSS (NM_001033489)	-315.0	NM_001033489	433809.0	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	5.15	3.23	9.25	3.37	3.73	11.25	4.22	0.44	3.75
Merged-chr19-6270041-3	chr19	6269538	6270538	+	790.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	5194.0	NR_029720	387187.0		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	41.19	43.77	35.15	55.33	27.06	32.15	52.81	34.05	41.84
Merged-chr2-165056536-3	chr2	165056037	165057037	+	790.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 1 of 7)	intron (NR_027852, intron 1 of 7)	901.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	29.75	8.29	4.62	11.47	7.0	7.23	59.15	31.39	18.11
Merged-chr2-181537818-3	chr2	181537340	181538340	+	790.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	17355.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	62.35	70.5	52.72	54.65	52.25	56.27	49.64	55.71	31.85
Merged-chr19-6872832-3	chr19	6872341	6873341	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-14630.0	NM_001081291	78317.0	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	71.51	89.39	85.1	91.09	68.58	84.4	120.41	137.51	88.68
Merged-chr5-122903518-2	chr5	122903021	122904021	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	intron (NM_001003953, intron 12 of 22)	-3171.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.72	1.84	1.85	8.77	5.6	4.02	6.34	1.77	2.5
Merged-chr8-84285874-1	chr8	84285374	84286374	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15472.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	2.29	4.61	0.0	5.4	11.66	4.82	6.34	3.98	1.25
Merged-chr4-86713178-1	chr4	86712678	86713678	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35377.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	8.58	2.76	0.0	6.07	5.6	9.65	2.11	3.54	1.25
Merged-chr18-49553870-1	chr18	49553370	49554370	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30581.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.0	4.61	1.85	10.12	8.4	10.45	3.17	7.52	8.12
Merged-chr4-46565805-3	chr4	46565304	46566304	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	636.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	104.69	95.38	140.59	103.23	73.71	98.87	50.7	50.41	29.35
Merged-chr14-54431789-1	chr14	54431289	54432289	+	790.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008608, exon 1 of 10)	5' UTR (NM_008608, exon 1 of 10)	191.0	NM_008608	17387.0	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	19.45	8.75	5.55	11.47	7.0	1.61	19.01	8.4	10.62
Merged-chr8-106892590-1	chr8	106892090	106893090	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	1003.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	49.77	45.62	46.25	54.65	44.32	69.13	67.6	52.18	34.35
Merged-chr3-127793707-2	chr3	127793252	127794252	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356430, intron 2 of 2)	intron (NM_001356430, intron 2 of 2)	3095.0	NM_001356430	211550.0	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	139.01	105.52	60.12	85.01	69.51	42.6	101.39	176.87	59.33
Merged-chr7-100474139-1	chr7	100473639	100474639	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1148.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	14.3	6.45	4.62	10.8	19.59	5.63	3.17	0.88	3.75
Merged-chr5-72173205-1	chr5	72172705	72173705	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5016.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	20.02	15.21	3.7	26.31	11.66	16.08	10.56	16.8	6.25
Merged-chr14-54402819-1	chr14	54402319	54403319	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	ORR1D1|LTR|ERVL-MaLR	6653.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	42.33	62.67	52.72	63.42	64.84	61.09	45.42	38.47	26.23
Merged-chr19-28010775-2	chr19	28010231	28011231	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	435.0	NM_011265	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	7.44	2.3	4.62	11.47	1.87	15.27	7.39	6.19	3.75
Merged-chr3-138889403-1	chr3	138888903	138889903	+	790.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121195, intron 2 of 7)	intron (NR_121195, intron 2 of 7)	147195.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	11.44	8.29	0.0	21.59	27.52	11.25	12.67	11.5	6.87
Merged-chr19-53451002-2	chr19	53450473	53451473	+	790.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	13823.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	6.86	4.61	3.7	7.42	7.46	6.43	1.06	0.88	1.25
Merged-chr2-27770337-5	chr2	27769727	27770727	+	790.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59644.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	9.15	6.91	4.62	6.75	2.33	3.22	3.17	0.88	6.25
Merged-chr13-19377366-3	chr13	19376864	19377864	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347485, intron 1 of 7)	intron (NM_001347485, intron 1 of 7)	18449.0	NM_024270	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	10.87	11.52	16.65	10.12	4.67	9.65	9.51	11.05	24.36
Merged-chr2-25256961-3	chr2	25256458	25257458	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177344)	TTS (NM_177344)	1519.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	86.95	59.44	48.1	18.22	13.53	7.23	16.9	21.22	16.86
Merged-chr10-53377244-3	chr10	53376708	53377708	+	790.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204983, intron 1 of 12)	intron (NM_001204983, intron 1 of 12)	2643.0	NM_001204983	100038725.0	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	Gm9766	centrosomal protein 85-like	protein-coding	22.31	8.75	12.95	18.89	10.73	19.29	20.07	27.86	18.11
Merged-chr10-88676383-3	chr10	88675879	88676879	+	790.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 5 of 5)	intron (NM_011461, intron 5 of 5)	6644.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	22.88	11.52	16.65	21.59	11.66	16.88	14.79	15.92	8.74
Merged-chr2-14236305-3	chr2	14235825	14236825	+	790.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	MTD|LTR|ERVL-MaLR	6911.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	42.33	34.1	33.3	45.88	31.26	31.35	54.92	42.89	36.22
Merged-chr7-125542771-3	chr7	125542282	125543282	+	790.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9500.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	19.45	15.67	12.02	13.49	7.0	8.04	19.01	25.65	12.49
Merged-chr6-116124268-1	chr6	116123768	116124768	+	790.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MT2B2|LTR|ERVL	69106.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	41.19	46.08	21.27	49.93	41.52	29.74	41.19	35.82	36.22
Merged-chr10-105508551-1	chr10	105508051	105509051	+	790.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	65928.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.72	0.92	3.7	4.05	5.6	1.61	4.22	2.65	5.62
Merged-chr11-88069112-3	chr11	88068615	88069615	+	790.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	CpG	836.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	35.47	29.49	26.82	50.6	22.86	26.53	65.48	29.63	23.11
Merged-chr4-32280562-3	chr4	32280071	32281071	+	790.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136864.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	21.17	23.04	22.2	26.31	20.06	37.78	22.18	18.13	22.48
Merged-chr4-95924471-3	chr4	95923957	95924957	+	790.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 15 of 15)	intron (NM_001113412, intron 15 of 15)	42578.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	8.01	4.61	3.7	6.75	1.87	4.02	14.79	11.94	12.49
Merged-chr2-116943342-5	chr2	116942847	116943847	+	790.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	43195.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	120.13	140.08	117.47	155.86	119.89	134.23	129.91	142.38	80.56
Merged-chr7-126099210-3	chr7	126098720	126099720	+	790.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16809.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	26.89	23.5	24.05	46.56	26.12	32.15	19.01	12.38	13.12
Merged-chr18-39876015-2	chr18	39875514	39876514	+	790.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102517.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	12.01	5.53	3.7	2.02	2.33	0.0	2.11	6.63	1.25
Merged-chr19-21273652-2	chr19	21273165	21274165	+	790.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	1387.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	259.14	378.76	157.24	329.94	366.68	207.38	294.68	363.9	185.48
Merged-chr2-28514689-3	chr2	28514156	28515156	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009058, intron 1 of 17)	intron (NM_009058, intron 1 of 17)	1489.0	NM_001145834	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	10.87	4.15	3.7	4.72	0.47	1.61	3.17	0.88	1.25
Merged-chr12-112632495-1	chr12	112631995	112632995	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 3 of 12)	intron (NM_007421, intron 3 of 12)	-12333.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	102.97	115.66	129.49	157.21	129.22	176.03	227.08	178.19	109.29
Merged-chr19-23015675-1	chr19	23015175	23016175	+	790.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125551.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	3.43	3.23	2.77	1.35	0.0	0.8	2.11	2.65	0.0
Merged-chr2-61514205-2	chr2	61513692	61514692	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64394.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	6.86	6.91	5.55	6.75	3.27	3.22	3.17	5.31	5.0
Merged-chr9-108341234-4	chr9	108340720	108341720	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329528)	TTS (NM_001329528)	2140.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	386.14	419.77	225.69	319.82	252.85	225.86	409.8	449.68	212.34
Merged-chr15-100780142-1	chr15	100779642	100780642	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021530, intron 2 of 24)	intron (NM_021530, intron 2 of 24)	-1112.0	NM_001347102	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	32.61	29.95	21.27	2.7	0.93	1.61	1.06	1.77	8.12
Merged-chrUn_GL456370-8050-1	chrUn_GL456370	7550	8550	+	790.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	25.35	8.4	0.0
Merged-chr10-94082471-3	chr10	94081965	94082965	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 3 of 20)	intron (NM_053072, intron 3 of 20)	46464.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	8.58	4.15	2.77	3.37	5.13	2.41	16.9	11.94	10.62
Merged-chr13-52507675-1	chr13	52507175	52508175	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024474, exon 2 of 2)	exon (NM_001024474, exon 2 of 2)	23161.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	5.72	2.3	9.25	7.42	0.93	3.22	3.17	1.33	3.75
Merged-chr15-67099027-1	chr15	67098527	67099527	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77855.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	1.14	0.92	0.0	3.37	3.73	5.63	2.11	3.1	0.0
Merged-chr14-55605035-3	chr14	55604546	55605546	+	790.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159418, intron 1 of 8)	intron (NM_001159418, intron 1 of 8)	467.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	89.24	79.72	74.92	76.24	83.04	60.28	101.39	126.46	49.34
Merged-chr10-22157590-1	chr10	22157090	22158090	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359809)	promoter-TSS (NM_001359809)	-979.0	NM_001359809	379043.0	Mm.439724	NM_198193	ENSMUSG00000053219	Raet1e	-	retinoic acid early transcript 1E	protein-coding	12.59	9.68	7.4	12.14	11.2	12.06	2.11	0.44	1.25
Merged-chr18-53743875-1	chr18	53743375	53744375	+	790.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178686, intron 2 of 20)	intron (NM_178686, intron 2 of 20)	672.0	NM_178686	225523.0	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	82.95	59.44	27.75	79.62	47.58	49.83	65.48	69.42	25.61
Merged-chr8-40995057-3	chr8	40994579	40995579	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005863, intron 12 of 13)	G-rich|Low_complexity|Low_complexity	-22389.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	14.3	14.75	24.05	13.49	13.06	8.84	14.79	15.03	16.24
Merged-chrX-155195184-3	chrX	155194711	155195711	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21238.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	52.63	49.76	35.15	43.18	52.72	56.27	49.64	68.09	26.85
Merged-chr1-106797506-3	chr1	106797016	106798016	+	790.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009190)	promoter-TSS (NM_009190)	-791.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	27.46	37.78	16.65	45.88	39.65	24.11	61.26	60.13	30.6
Merged-chr7-16056721-3	chr7	16056274	16057274	+	790.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15071.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	14.87	17.05	21.27	19.57	15.39	25.72	39.08	42.89	11.24
Merged-chr15-80006353-1	chr15	80005853	80006853	+	790.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	-7327.0	NR_106072	102465699.0		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	12.01	4.15	14.8	20.92	9.33	12.86	3.17	2.65	5.62
Merged-chr2-163716613-2	chr2	163716111	163717111	+	790.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	22574.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	28.03	19.81	24.05	20.24	11.2	8.84	17.96	12.38	11.87
Merged-chr13-51099548-3	chr13	51099045	51100045	+	790.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_029463, exon 1 of 1)	non-coding (NR_029463, exon 1 of 1)	1182.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	19.45	23.96	24.05	18.22	24.26	24.92	22.18	16.8	12.49
Merged-chr13-6633626-3	chr13	6633124	6634124	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	15147.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	12.59	12.9	11.1	2.7	6.53	2.41	7.39	3.98	5.0
Merged-chr4-43479680-3	chr4	43479170	43480170	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4039.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	26.31	32.72	24.97	33.74	33.12	28.94	33.8	45.1	35.6
Merged-chr10-111118547-3	chr10	111118038	111119038	+	790.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-46264.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	12.01	7.83	6.47	11.47	13.53	11.25	4.22	5.75	5.0
Merged-chr6-51524468-4	chr6	51524054	51525054	+	790.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361581, intron 1 of 6)	intron (NM_001361581, intron 1 of 6)	294.0	NM_001361580	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	152.17	160.81	117.47	153.84	158.61	151.11	138.36	157.41	97.43
Merged-chr7-114086300-3	chr7	114085793	114086793	+	790.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	31488.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	20.02	17.51	26.82	19.57	15.39	16.08	47.53	26.09	24.36
Merged-chr8-103970666-1	chr8	103970166	103971166	+	790.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-130959.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	4.58	3.69	1.85	22.94	11.66	4.82	14.79	15.03	11.87
Merged-chr14-55863952-3	chr14	55863411	55864411	+	790.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040072, exon 3 of 8)	exon (NM_001040072, exon 3 of 8)	9796.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	4.58	2.76	0.0	8.77	2.8	1.61	0.0	2.65	3.75
Merged-chr6-86822768-1	chr6	86822268	86823268	+	790.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26672.0	NR_028298	67170.0	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	10.87	1.84	7.4	12.82	10.26	3.22	9.51	6.63	3.75
Merged-chr19-59239550-3	chr19	59239003	59240003	+	790.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19855.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	5.72	2.3	0.0	1.35	2.8	4.82	0.0	0.88	0.0
Merged-chr6-108449227-2	chr6	108448658	108449658	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-40585.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	147.59	182.01	92.5	168.0	155.35	138.25	148.92	169.79	43.72
Merged-chr18-47368969-2	chr18	47368459	47369459	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018744)	promoter-TSS (NM_018744)	-89.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	1.72	1.38	0.0	6.07	2.33	3.22	3.17	0.88	2.5
Merged-chr2-18939071-2	chr2	18938571	18939571	+	790.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	59050.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	18.88	18.89	33.3	20.92	8.86	16.08	15.84	4.42	7.49
Merged-chr9-120936522-3	chr9	120936020	120937020	+	790.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	intron (NM_007614, intron 1 of 14)	2942.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	58.35	66.81	20.35	40.48	61.11	49.83	44.36	36.26	9.37
Merged-chr11-72518706-3	chr11	72518217	72519217	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029932, intron 8 of 11)	MTD|LTR|ERVL-MaLR	-28797.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	4.0	4.61	1.85	6.75	1.4	9.65	4.22	2.21	5.0
Merged-chr16-56647021-3	chr16	56646519	56647519	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014399, intron 12 of 27)	intron (NM_001014399, intron 12 of 27)	70431.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	14.87	16.13	5.55	11.47	9.8	8.04	4.22	1.77	0.0
Merged-chr2-71598987-3	chr2	71598499	71599499	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-52245.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	4.58	1.38	7.4	9.45	2.33	0.0	16.9	19.01	9.99
Merged-chr10-17416305-3	chr10	17415817	17416817	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-306911.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	13.73	13.82	11.1	11.47	13.06	14.47	7.39	8.4	18.11
Merged-chr9-25522109-3	chr9	25521618	25522618	+	790.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	40521.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	16.59	12.9	5.55	15.52	7.46	11.25	13.73	14.59	12.49
Merged-chr3-31446591-2	chr3	31446079	31447079	+	790.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136260.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	6.86	3.23	5.55	8.77	5.6	12.06	19.01	16.36	3.75
Merged-chrX-140697820-3	chrX	140697317	140698317	+	790.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358367, intron 3 of 9)	intron (NM_001358367, intron 3 of 9)	32861.0	NM_001358366	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	9.72	14.75	5.55	19.57	14.93	16.08	10.56	17.69	14.99
Merged-chr5-76853806-2	chr5	76853359	76854359	+	790.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163793, intron 4 of 8)	intron (NM_001163793, intron 4 of 8)	13260.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	2.29	1.84	1.85	10.12	0.47	0.0	1.06	2.21	6.87
Merged-chr3-27692421-3	chr3	27691920	27692920	+	790.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 1 of 26)	intron (NM_001356953, intron 1 of 26)	18032.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	24.03	28.11	22.2	43.18	34.52	12.86	26.4	33.16	19.36
Merged-chr3-103169980-3	chr3	103169479	103170479	+	790.005554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177857)	TTS (NM_177857)	-1676.0	NM_026602	68183.0	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	5.72	6.45	4.62	4.05	4.2	1.61	3.17	2.21	5.0
Merged-chr5-64385117-2	chr5	64384624	64385624	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	82818.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	16.02	12.44	11.1	16.87	12.13	16.08	10.56	10.61	13.12
Merged-chr12-32280308-2	chr12	32279800	32280800	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-71651.0	NM_001146200	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	7.44	5.53	5.55	10.12	6.06	4.02	4.22	3.98	1.87
Merged-chr15-12052009-1	chr15	12051509	12052509	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56002.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	20.02	19.35	11.1	20.24	19.13	5.63	4.22	3.98	3.75
Merged-chr15-67235311-1	chr15	67234811	67235811	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	8542.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.15	4.15	0.0	1.35	2.8	4.02	6.34	2.21	5.0
Merged-chr17-10675249-1	chr17	10674749	10675749	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	164942.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.72	2.76	3.7	5.4	5.13	8.84	2.11	2.65	2.5
Merged-chr3-8669941-1	chr3	8669441	8670441	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2903.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	7.44	4.15	5.55	7.42	4.67	4.82	5.28	2.65	6.25
Merged-chr11-53309052-1	chr11	53308552	53309552	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8573.0	NM_008300	15525.0	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	20.02	14.28	30.52	28.34	27.06	20.9	24.29	20.34	21.86
Merged-chr18-49609488-1	chr18	49608988	49609988	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86199.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	4.0	4.15	2.77	14.17	6.53	8.04	7.39	1.77	8.74
Merged-chr17-15652034-3	chr17	15651565	15652565	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20277.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	4.58	4.15	9.25	4.05	3.27	3.22	7.39	2.65	1.25
Merged-chrX-103821966-1	chrX	103821466	103822466	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009197)	promoter-TSS (NM_009197)	22.0	NM_009197	20502.0	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	2.29	1.38	3.7	0.0	2.33	3.22	1.06	1.33	1.25
Merged-chr1-151581818-2	chr1	151581316	151582316	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	HAL1M8|LINE|L1	10443.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	7.44	18.43	12.95	51.28	35.45	46.62	35.91	33.6	27.48
Merged-chr1-173732860-1	chr1	173732360	173733360	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204910, intron 3 of 7)	Lx7|LINE|L1	8949.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	15.45	5.53	5.55	18.22	11.2	15.27	8.45	3.1	13.12
Merged-chr11-44539415-1	chr11	44538915	44539915	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166553, intron 3 of 5)	intron (NM_001166553, intron 3 of 5)	20038.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	92.67	79.25	61.05	72.19	60.65	56.27	108.79	106.12	61.83
Merged-chr7-64388918-1	chr7	64388418	64389418	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026483, exon 3 of 11)	exon (NM_026483, exon 3 of 11)	3318.0	NM_026483	67973.0	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	16.59	19.81	18.5	19.57	17.26	11.25	20.07	25.2	14.36
Merged-chr19-24164172-1	chr19	24163672	24164672	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011597, intron 1 of 22)	intron (NM_011597, intron 1 of 22)	10017.0	NM_001198985	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	8.58	3.69	3.7	4.72	0.47	1.61	2.11	0.44	3.75
Merged-chr17-13761500-3	chr17	13761003	13762003	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022311)	promoter-TSS (NM_022311)	-109.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	5.72	2.76	1.85	7.42	1.87	3.22	6.34	1.33	1.25
Merged-chr18-62170735-1	chr18	62170235	62171235	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9246.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	27.46	47.0	33.3	39.13	33.59	32.15	39.08	23.43	24.36
Merged-chr6-136620967-1	chr6	136620467	136621467	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025806, intron 6 of 10)	intron (NM_025806, intron 6 of 10)	40926.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	1.72	4.61	5.55	4.72	0.93	1.61	7.39	3.98	8.74
Merged-chr1-136657734-2	chr1	136657240	136658240	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-25656.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	17.73	20.74	18.5	33.74	20.53	26.53	11.62	18.57	21.86
Merged-chr6-34870352-2	chr6	34869861	34870861	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	PB1D10|SINE|Alu	7215.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	181.91	183.39	132.27	237.5	195.93	178.44	138.36	174.66	141.77
Merged-chr12-102357012-2	chr12	102356501	102357501	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 4 of 9)	intron (NM_177620, intron 4 of 9)	73360.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	17.16	15.21	11.1	4.05	2.33	1.61	23.24	14.59	12.49
Merged-chr16-17759215-1	chr16	17758715	17759715	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-406.0	NM_145479	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	38.9	24.88	24.05	26.31	21.93	41.8	24.29	12.38	24.98
Merged-chr11-30773127-1	chr11	30772627	30773627	+	790.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	intron (NM_134013, intron 1 of 46)	1352.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	54.92	49.76	38.85	78.94	77.91	61.89	94.0	88.88	53.08
Merged-chr18-52614211-1	chr18	52613711	52614711	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1704.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.57	2.3	3.7	0.67	1.4	6.43	1.06	0.0	1.25
Merged-chr19-34959591-1	chr19	34959091	34960091	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183046, intron 25 of 31)	intron (NM_183046, intron 25 of 31)	-5805.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	5.15	1.84	1.85	4.72	9.33	9.65	0.0	11.94	7.49
Merged-chr2-71787373-1	chr2	71786873	71787873	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	CpG	434.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	2.86	0.92	0.0	3.37	2.8	0.0	1.06	1.33	2.5
Merged-chr10-121263677-2	chr10	121263168	121264168	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029057)	TTS (NM_029057)	47728.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	27.46	30.41	16.65	58.03	73.24	58.68	12.67	13.27	6.25
Merged-chr10-95086905-1	chr10	95086405	95087405	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58920.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	1.72	1.38	1.85	2.02	5.6	1.61	2.11	2.65	1.25
Merged-chr18-9505920-2	chr18	9505402	9506402	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55748.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	21.17	17.51	3.7	43.18	29.86	6.43	42.25	26.53	7.49
Merged-chr1-138174345-1	chr1	138173845	138174845	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	781.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	280.88	464.47	197.02	255.72	341.95	159.15	313.69	388.66	172.99
Merged-chr17-5975866-2	chr17	5975388	5976388	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151772, intron 2 of 25)	intron (NR_151772, intron 2 of 25)	302.0	NM_011523	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	9.72	8.29	7.4	13.49	8.86	24.92	25.35	6.63	5.0
Merged-chr15-67088794-1	chr15	67088294	67089294	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	88088.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.29	10.14	12.02	6.07	13.06	6.43	10.56	7.07	13.74
Merged-chr12-112552209-3	chr12	112551703	112552703	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36581.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	5.72	4.15	0.0	5.4	1.4	12.06	3.17	1.77	1.25
Merged-chr13-45330641-1	chr13	45330141	45331141	+	790.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	6.29	7.83	4.62	7.42	6.53	8.04	3.17	3.54	3.75
Merged-chr6-48687297-1	chr6	48686797	48687797	+	790.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243199, intron 2 of 3)	intron (NM_001243199, intron 2 of 3)	2719.0	NM_001243201	107526.0	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	2.29	2.76	1.85	2.7	4.67	2.41	2.11	0.88	0.0
Merged-chr8-105347159-3	chr8	105346658	105347658	+	789.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	812.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	182.49	158.05	178.52	143.71	135.29	137.45	208.07	208.7	108.04
Merged-chr1-39901424-5	chr1	39900943	39901943	+	789.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 1 of 29)	CpG	530.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	32.04	17.51	28.67	40.48	13.06	7.23	49.64	11.05	18.74
Merged-chr19-55818149-2	chr19	55817650	55818650	+	789.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	76340.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	18.31	15.21	19.42	23.62	13.06	17.68	14.79	13.71	8.12
Merged-chr11-118216042-3	chr11	118215590	118216590	+	789.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	MTD|LTR|ERVL-MaLR	-3348.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	86.95	79.25	65.67	114.7	70.44	105.3	96.11	77.82	48.09
Merged-chr11-78267998-3	chr11	78267476	78268476	+	789.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002004, intron 11 of 38)	intron (NM_001002004, intron 11 of 38)	6222.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	22.31	11.52	27.75	15.52	16.79	20.9	22.18	17.24	10.62
Merged-chr2-157458639-2	chr2	157458138	157459138	+	789.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025395, intron 5 of 13)	intron (NM_001025395, intron 5 of 13)	34345.0	NM_001025395	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	2.86	1.84	2.77	7.42	2.8	1.61	2.11	0.44	1.25
Merged-chr7-126194336-3	chr7	126193836	126194836	+	789.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 1 of 23)	intron (NM_028816, intron 1 of 23)	6165.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	5.72	8.29	2.77	12.82	7.93	7.23	7.39	5.75	6.25
Merged-chr5-122925655-3	chr5	122925172	122926172	+	789.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003953, intron 11 of 22)	intron (NM_001003953, intron 11 of 22)	-25322.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	8.01	2.3	0.0	2.7	3.73	4.02	3.17	0.88	1.25
Merged-chr6-43645338-2	chr6	43644833	43645833	+	789.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	20945.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	9.15	10.6	12.95	6.75	4.67	10.45	7.39	3.98	5.0
Merged-chr1-55430447-3	chr1	55429945	55430945	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	24499.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	24.03	23.5	21.27	101.21	119.43	80.38	20.07	11.94	12.49
Merged-chr1-52847796-3	chr1	52847308	52848308	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146108, intron 1 of 13)	MTC|LTR|ERVL-MaLR	2770.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	4.0	1.38	1.85	2.02	5.6	6.43	6.34	3.98	7.49
Merged-chr2-18816222-3	chr2	18815723	18816723	+	789.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14405.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	12.01	4.61	3.7	6.75	4.67	9.65	8.45	3.98	3.75
Merged-chr2-75588770-2	chr2	75588271	75589271	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70488.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	2.29	4.61	0.0	3.37	0.47	4.02	1.06	1.77	0.62
Merged-chr8-115311135-2	chr8	115310620	115311620	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	395774.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.15	6.91	6.47	4.72	3.73	4.82	2.11	3.1	2.5
Merged-chr5-66016314-2	chr5	66015806	66016806	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001127382)	TTS (NM_001127382)	-12021.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	65.79	61.75	52.72	82.99	73.24	63.5	96.11	91.53	44.97
Merged-chr13-91656801-2	chr13	91656298	91657298	+	789.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360775, intron 5 of 16)	intron (NM_001360775, intron 5 of 16)	-84723.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	24.03	29.49	6.47	21.59	30.32	22.51	24.29	10.61	15.61
Merged-chr11-76593856-2	chr11	76593374	76594374	+	789.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16135.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	25.17	35.94	23.12	17.54	22.39	31.35	42.25	42.89	43.09
Merged-chr8-61558701-4	chr8	61558115	61559115	+	789.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	32554.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	40.62	65.89	61.05	33.74	49.45	50.64	46.47	39.35	32.48
Merged-chr12-100639954-2	chr12	100639447	100640447	+	789.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	85173.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	3.43	6.45	5.55	6.07	5.13	2.41	6.34	4.86	2.5
Merged-chr16-95825355-3	chr16	95824858	95825858	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73355.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	12.59	8.75	5.55	14.17	8.86	16.88	20.07	11.5	9.99
Merged-chrX-134809086-1	chrX	134808586	134809586	+	789.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001166397, exon 1 of 6)	5' UTR (NM_001166397, exon 1 of 6)	135.0	NM_001166397	67416.0	Mm.285969	NM_026139	ENSMUSG00000033436	Armcx2	3230401N03Rik|AI043003|ALEX2	armadillo repeat containing, X-linked 2	protein-coding	4.0	4.15	1.85	6.07	5.6	8.04	1.06	0.88	5.0
Merged-chr10-7271633-3	chr10	7271172	7272172	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59435.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	9.72	11.06	18.5	16.19	11.2	10.45	3.17	3.54	8.12
Merged-chr15-96660951-3	chr15	96660406	96661406	+	789.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17993.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	15.45	12.9	11.1	14.84	12.13	11.25	13.73	11.05	23.73
Merged-chr2-167776245-2	chr2	167775716	167776716	+	789.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85039.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	361.54	211.96	261.76	352.2	206.2	263.64	312.63	214.45	163.63
Merged-chr9-47531289-4	chr9	47530772	47531772	+	789.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	CpG	920.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	57.78	60.36	40.7	74.22	59.25	59.48	55.98	30.07	25.61
Merged-chr15-79946194-3	chr15	79945713	79946713	+	789.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13567.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.15	5.53	0.92	6.75	4.67	8.04	5.28	2.21	3.75
Merged-chr2-10005405-3	chr2	10004892	10005892	+	789.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	43217.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	5.72	3.69	5.55	4.72	5.13	3.22	3.17	3.54	1.25
Merged-chr4-49607304-2	chr4	49606824	49607824	+	789.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-9448.0	NM_025944	67063.0	Mm.454013	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	4.58	7.37	3.7	11.47	5.13	8.04	8.45	6.19	7.49
Merged-chr12-102425547-2	chr12	102425054	102426054	+	789.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	B1_Mur4|SINE|Alu	14259.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	78.94	86.17	68.45	96.48	82.11	90.83	104.56	94.62	49.34
Merged-chr10-13837177-3	chr10	13836675	13837675	+	789.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	intron (NM_025446, intron 1 of 5)	31782.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	77.8	60.36	39.77	103.23	70.91	72.34	31.69	10.61	9.99
Merged-chr3-115715143-4	chr3	115714654	115715654	+	789.737488	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007901)	promoter-TSS (NM_007901)	-99.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	14.3	11.52	2.77	31.71	34.06	29.74	9.51	6.63	6.87
Merged-chr12-32656257-3	chr12	32655771	32656771	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-164064.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	13.16	14.75	3.7	19.57	20.53	10.45	9.51	5.31	6.25
Merged-chr1-176836862-3	chr1	176836375	176837375	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	-742.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	169.9	119.34	94.35	120.77	94.7	90.83	130.97	178.64	99.92
Merged-chr15-18821583-3	chr15	18821071	18822071	+	789.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	1242.0	NM_009865	320873.0	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	2.86	4.15	7.4	5.4	2.8	3.22	6.34	3.98	3.12
Merged-chr11-83593645-3	chr11	83593142	83594142	+	789.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009139)	promoter-TSS (NM_009139)	-555.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	106.97	94.92	63.82	126.85	89.57	93.24	101.39	94.62	59.95
Merged-chrX-168648005-1	chrX	168647505	168648505	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25897.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	8.58	8.75	14.8	9.45	10.26	9.65	7.39	8.4	5.0
Merged-chr19-5796876-3	chr19	5796428	5797428	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_144621)	promoter-TSS (NR_144621)	-947.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	86.95	45.16	27.75	53.3	28.46	18.49	43.3	42.01	26.23
Merged-chr2-73819019-1	chr2	73818519	73819519	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001284376, exon 15 of 15)	exon (NM_001284376, exon 15 of 15)	-43673.0	NM_001113246	108699.0	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	9.72	7.83	0.0	4.05	3.27	5.63	0.0	1.33	1.25
Merged-chr9-16114949-1	chr9	16114449	16115449	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-240393.0	NM_145712	244701.0	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	47.48	31.79	31.45	33.74	28.46	30.54	44.36	40.68	23.11
Merged-chr10-37359521-1	chr10	37359021	37360021	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-220595.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	39.47	37.78	32.37	25.64	37.79	40.19	33.8	33.16	28.73
Merged-chr11-35091122-1	chr11	35090622	35091622	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30334.0	NM_011412	20564.0	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit guidance ligand 3	protein-coding	5.15	3.69	1.85	8.1	3.73	7.23	2.11	0.0	0.0
Merged-chr8-24725888-1	chr8	24725388	24726388	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009619)	promoter-TSS (NM_009619)	-36.0	NM_001324489	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	4.0	2.76	1.85	2.02	2.33	0.0	4.22	0.44	7.49
Merged-chr6-87130252-3	chr6	87129759	87130759	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25513.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	22.88	23.04	16.65	17.54	14.0	23.31	40.14	34.05	25.61
Merged-chrX-155169769-1	chrX	155169269	155170269	+	789.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-21920.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	14.3	22.58	14.8	26.99	14.93	28.94	14.79	18.57	16.86
Merged-chr4-53158061-3	chr4	53157574	53158574	+	789.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	1821.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	233.4	241.91	123.02	219.28	243.98	211.4	209.12	257.78	143.64
Merged-chr17-31289277-2	chr17	31288776	31289776	+	789.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6207.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	18.31	11.06	5.55	8.77	8.86	8.04	21.12	7.07	17.49
Merged-chr6-108433044-2	chr6	108432536	108433536	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 42 of 61)	intron (NM_010585, intron 42 of 61)	-56707.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.58	8.75	7.4	8.77	7.46	9.65	3.17	3.98	3.75
Merged-chr12-12279511-2	chr12	12279009	12280009	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	17370.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	108.12	140.54	91.57	129.55	138.09	99.67	97.17	115.41	55.58
Merged-chr13-107836423-2	chr13	107835912	107836912	+	789.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	53652.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	41.76	33.18	18.5	29.01	18.66	18.49	22.18	18.13	17.49
Merged-chr6-5425647-2	chr6	5425120	5426120	+	789.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355662, intron 3 of 4)	intron (NM_001355662, intron 3 of 4)	35210.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.15	5.07	1.85	8.1	1.87	4.82	10.56	2.21	5.62
Merged-chr2-152414844-3	chr2	152414296	152415296	+	789.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289738)	promoter-TSS (NM_001289738)	248.0	NM_175126	67917.0	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	20.02	10.14	9.25	13.49	14.0	5.63	7.39	6.63	11.24
Merged-chr15-76794968-3	chr15	76794464	76795464	+	789.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	23206.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	25.74	32.25	26.82	31.04	31.26	49.03	29.57	19.01	23.73
Merged-chr16-33820944-3	chr16	33820453	33821453	+	789.627747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8712.0	NM_010580	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	10.3	4.61	0.0	2.7	0.93	7.23	2.11	4.42	1.25
Merged-chr10-71262631-3	chr10	71262127	71263127	+	789.616699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145420, intron 1 of 6)	intron (NM_145420, intron 1 of 6)	22635.0	NM_145420	216080.0	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	20.02	16.13	18.5	21.59	14.46	25.72	13.73	15.03	10.62
Merged-chr10-128057907-3	chr10	128057413	128058413	+	789.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1069.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	42.33	29.49	11.1	48.58	27.99	26.53	44.36	40.24	23.73
Merged-chr1-182281553-1	chr1	182281053	182282053	+	789.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007853, intron 1 of 2)	intron (NM_007853, intron 1 of 2)	642.0	NM_001360783	13244.0	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	37.76	24.42	12.02	59.38	36.85	31.35	32.74	26.53	12.49
Merged-chr3-79936331-1	chr3	79935831	79936831	+	789.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133187, intron 2 of 3)	intron (NM_133187, intron 2 of 3)	50401.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	9.15	2.3	5.55	3.37	3.73	6.43	4.22	0.88	1.25
Merged-chr1-128643666-3	chr1	128643149	128644149	+	789.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51350.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	36.04	19.81	12.02	39.81	12.6	13.66	8.45	11.94	6.25
Merged-chr19-34196751-3	chr19	34196271	34197271	+	789.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3837.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	30.32	32.25	24.05	19.57	26.12	24.92	30.63	29.18	22.48
Merged-chr11-75192934-3	chr11	75192382	75193382	+	789.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1111.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	9.72	1.84	0.0	3.37	0.93	1.61	1.06	1.77	1.25
Merged-chr4-130792655-8	chr4	130792138	130793138	+	789.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011520, exon 1 of 5)	5' UTR (NM_011520, exon 1 of 5)	101.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	118.42	105.06	143.37	138.32	115.69	150.31	165.82	138.4	91.81
Merged-chr1-138912432-1	chr1	138911932	138912932	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35482.0	NR_138576	75546.0	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	2.86	2.3	1.85	16.87	7.0	4.02	6.34	4.42	8.74
Merged-chr16-91846610-3	chr16	91846093	91847093	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 19 of 28)	intron (NM_001110275, intron 19 of 28)	85037.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	77.23	74.19	68.45	67.47	62.98	96.45	86.61	109.22	64.95
Merged-chr19-30010780-1	chr19	30010280	30011280	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34D_MM|LTR|ERVK	6990.0	NM_025741	66745.0	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	5.72	5.99	0.0	5.4	8.4	16.08	10.56	2.65	5.0
Merged-chr3-51789569-3	chr3	51789075	51790075	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	128396.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	21.74	21.66	26.82	31.04	27.99	47.42	17.96	24.76	14.99
Merged-chrUn_JH584304-67155-1	chrUn_JH584304	66655	67655	+	789.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-7466.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	64.43	36.7	0.0
Merged-chr5-45923158-1	chr5	45922658	45923658	+	789.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9251.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	5.15	13.82	7.4	4.72	9.33	8.04	30.63	24.32	14.36
Merged-chr1-157014204-3	chr1	157013711	157014711	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74585.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	89.24	99.07	67.52	209.16	137.62	123.78	70.76	62.35	46.22
Merged-chr17-47141061-2	chr17	47140447	47141447	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001097623)	promoter-TSS (NM_001097623)	5.0	NM_001097623	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	21.74	12.44	11.1	16.87	7.46	8.04	9.51	3.54	0.0
Merged-chr10-8122114-2	chr10	8121613	8122613	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165990.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.29	15.67	5.55	20.24	17.26	32.15	28.52	11.94	16.24
Merged-chr5-100628190-2	chr5	100627690	100628690	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46066.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	8.58	7.83	9.25	3.37	5.6	11.25	11.62	14.59	8.74
Merged-chr10-94537289-3	chr10	94536779	94537779	+	789.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	B2_Mm1t|SINE|B2	-13593.0	NM_001359761	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	9.72	8.75	13.87	10.12	15.39	12.86	11.62	11.5	13.12
Merged-chr11-70396454-1	chr11	70395954	70396954	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029231, intron 12 of 16)	intron (NM_029231, intron 12 of 16)	13577.0	NM_029231	75273.0	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	5.72	4.15	19.42	12.14	6.06	6.43	6.34	2.21	2.5
Merged-chr15-82380357-1	chr15	82379857	82380857	+	789.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163472)	promoter-TSS (NM_001163472)	-97.0	NM_001163472	56448.0	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	9.15	5.07	7.4	8.77	5.6	7.23	8.45	4.86	6.87
Merged-chr6-87122369-5	chr6	87121917	87122917	+	789.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17671.0	NM_001167937	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	41.76	26.73	20.35	36.43	25.66	34.56	66.54	47.75	15.61
Merged-chr13-43547049-3	chr13	43546542	43547542	+	789.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081059, intron 6 of 8)	intron (NM_001081059, intron 6 of 8)	13149.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	18.31	16.13	5.55	6.75	5.6	8.04	16.9	9.73	6.25
Merged-chr11-22631883-6	chr11	22631390	22632390	+	789.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119607.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	30.32	23.96	7.4	23.62	38.72	29.74	46.47	24.76	13.12
Merged-chr3-87033605-3	chr3	87033097	87034097	+	789.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34257.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	5.72	5.07	0.0	5.4	0.47	3.22	4.22	3.1	2.5
Merged-chr11-115601302-3	chr11	115600790	115601790	+	789.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173048, intron 1 of 16)	intron (NM_173048, intron 1 of 16)	2626.0	NM_001252067	260302.0	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	42.33	54.83	42.55	95.14	77.44	91.63	48.58	59.25	49.96
Merged-chr13-108013279-2	chr13	108012781	108013781	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31193.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	8.01	4.15	1.85	7.42	2.8	8.84	5.28	5.75	6.25
Merged-chr12-111944091-2	chr12	111943596	111944596	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029464, intron 1 of 2)	intron (NR_029464, intron 1 of 2)	386.0	NR_029464	77675.0	Mm.98331	NR_029464	ENSMUSG00000113769	5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	8.58	5.07	3.7	42.51	47.12	57.87	51.75	37.14	41.84
Merged-chr18-84720211-2	chr18	84719702	84720702	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173770)	promoter-TSS (NM_173770)	58.0	NM_173770	240479.0	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	3.43	0.46	3.7	4.05	1.4	0.0	2.11	1.33	2.5
Merged-chr11-90242040-2	chr11	90241559	90242559	+	789.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7417.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	21.17	26.73	12.95	52.63	31.72	47.42	27.46	11.94	13.74
Merged-chr11-51918089-3	chr11	51917615	51918615	+	789.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49516.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	37.18	35.02	23.12	55.33	27.06	56.27	24.29	32.28	29.35
Merged-chr17-6215957-3	chr17	6215478	6216478	+	789.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001103181, intron 8 of 13)	intron (NM_001103181, intron 8 of 13)	-40882.0	NM_001357884	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	14.87	5.99	2.77	21.59	5.6	5.63	8.45	5.31	3.75
Merged-chr10-41288980-3	chr10	41288477	41289477	+	789.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133999, intron 1 of 22)	intron (NM_133999, intron 1 of 22)	14264.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	10.3	4.61	0.0	4.72	2.8	1.61	2.11	0.0	0.0
Merged-chr8-106151231-2	chr8	106150747	106151747	+	789.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357319, intron 1 of 5)	intron (NM_001357319, intron 1 of 5)	893.0	NM_001357319	192654.0	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	240.83	240.53	175.74	329.26	339.15	265.25	373.89	504.51	164.88
Merged-chr2-179948963-2	chr2	179948462	179949462	+	789.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	27684.0	NM_001081092	228980.0	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	5.15	5.53	2.77	5.4	4.67	3.22	9.51	2.65	3.75
Merged-chr12-11277395-2	chr12	11276903	11277903	+	789.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361252, intron 4 of 9)	intron (NM_001361252, intron 4 of 9)	11517.0	NM_025695	67241.0	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	15.45	15.21	10.17	13.49	19.13	18.49	11.62	9.29	13.74
Merged-chr3-60474407-1	chr3	60473907	60474907	+	789.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253713, intron 2 of 9)	intron (NM_001253713, intron 2 of 9)	1577.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	104.69	182.47	70.3	93.79	133.42	88.42	197.51	203.84	93.68
Merged-chr1-173412666-1	chr1	173412166	173413166	+	789.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-7938.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	44.05	46.54	24.05	55.33	25.19	27.33	38.02	41.12	43.72
Merged-chr1-180904829-3	chr1	180904346	180905346	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133705, intron 2 of 6)	intron (NM_133705, intron 2 of 6)	572.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	19.45	14.28	16.65	28.34	24.26	40.99	40.14	34.49	20.61
Merged-chr15-34336419-3	chr15	34335921	34336921	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358780, intron 2 of 18)	intron (NM_001358780, intron 2 of 18)	21451.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	1.72	5.07	0.0	1.35	4.2	9.65	3.17	0.88	1.25
Merged-chr17-32810831-3	chr17	32810329	32811329	+	789.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-898.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	4.58	5.53	1.85	6.75	3.73	9.65	28.52	22.99	9.37
Merged-chr10-80693750-4	chr10	80693268	80694268	+	789.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	8052.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	125.28	111.97	95.27	103.91	97.5	59.48	111.96	143.7	64.33
Merged-chr18-50113060-2	chr18	50112551	50113551	+	789.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15150.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	10.87	17.97	18.5	12.14	14.93	14.47	48.58	63.23	26.23
Merged-chr2-91204872-3	chr2	91204360	91205360	+	789.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357067, intron 3 of 10)	intron (NM_001357067, intron 3 of 10)	1948.0	NM_007387	11432.0	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	93.24	143.3	130.42	93.11	89.57	103.69	121.46	136.19	76.82
Merged-chr18-84799482-2	chr18	84798989	84799989	+	789.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51849.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	4.0	2.3	7.4	4.05	2.33	3.22	1.06	3.1	12.49
Merged-chrX-121401216-2	chrX	121400709	121401709	+	789.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	996176.0	NM_138742	54561.0	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	6.29	9.68	3.7	9.45	12.6	10.45	0.0	0.0	0.62
Merged-chr12-110843388-3	chr12	110842895	110843895	+	789.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152102, exon 2 of 2)	non-coding (NR_152102, exon 2 of 2)	2366.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	74.94	100.45	86.95	100.53	83.97	81.99	97.17	110.54	48.09
Merged-chr11-46373258-3	chr11	46372757	46373757	+	789.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281966, intron 1 of 16)	Lx8b|LINE|L1	16258.0	NM_001281968	16428.0	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	24.03	17.97	19.42	14.84	22.86	26.53	39.08	36.26	27.48
Merged-chr11-17007477-5	chr11	17007053	17008053	+	789.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	PB1D7|SINE|Alu	1165.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	157.89	225.78	145.22	154.51	132.02	124.59	178.5	205.61	109.29
Merged-chr16-20509163-3	chr16	20508719	20509719	+	789.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172265, exon 16 of 16)	3' UTR (NM_172265, exon 16 of 16)	-7767.0	NM_001347176	13544.0	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	b2b2866Clo	dishevelled segment polarity protein 3	protein-coding	20.59	16.13	33.3	16.87	16.33	21.7	25.35	14.59	17.49
Merged-chr6-108277153-2	chr6	108276653	108277653	+	789.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	64057.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	9.15	3.69	0.0	3.37	3.73	4.82	3.17	1.33	3.12
Merged-chr10-37979188-2	chr10	37978688	37979688	+	789.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196586.0	NR_131035	75877.0	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	2.86	3.69	1.85	7.42	5.13	4.82	3.17	3.54	6.25
Merged-chr3-37140719-2	chr3	37140203	37141203	+	789.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-14749.0	NM_008366	16183.0	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	11.44	24.88	20.35	15.52	11.2	38.58	8.45	11.05	14.36
Merged-chr5-105393586-3	chr5	105393112	105394112	+	789.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	-22163.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	5.72	6.91	5.55	2.7	3.27	4.02	1.06	3.54	5.0
Merged-chr9-90113078-3	chr9	90112596	90113596	+	789.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	B4A|SINE|B4	1724.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	139.58	171.41	122.09	133.59	108.7	100.47	170.05	222.41	122.41
Merged-chr4-88840230-3	chr4	88839727	88840727	+	789.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1589.0	NM_010504	15967.0	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	3.43	8.75	1.85	3.37	6.06	1.61	2.11	9.29	1.25
Merged-chr2-29194761-3	chr2	29194248	29195248	+	789.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001305805)	TTS (NM_001305805)	53351.0	NM_001305805	171171.0	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.57	0.92	0.0	3.37	2.33	1.61	5.28	1.77	5.0
Merged-chr4-41614334-3	chr4	41613832	41614832	+	789.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175138, exon 11 of 20)	exon (NM_175138, exon 11 of 20)	25970.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	1.14	0.92	5.55	3.37	4.2	1.61	6.34	1.77	2.5
Merged-chr6-146746754-2	chr6	146746258	146747258	+	789.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	21828.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	5.72	5.07	5.55	6.75	9.33	2.41	5.28	8.4	4.37
Merged-chr11-75510256-4	chr11	75509716	75510716	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138659)	TTS (NM_138659)	122.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	85.24	76.95	88.8	71.52	89.57	110.92	100.34	78.71	74.94
Merged-chr16-87746904-3	chr16	87746402	87747402	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	47948.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.72	3.23	0.92	4.72	0.47	0.0	1.06	5.75	1.87
Merged-chr8-36185370-2	chr8	36184889	36185889	+	789.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29379.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.0	2.3	9.25	4.72	2.33	0.0	2.11	1.77	0.0
Merged-chr3-41402037-3	chr3	41401544	41402544	+	789.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91155.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	23.45	12.9	10.17	22.94	14.46	16.88	4.22	11.5	18.74
Merged-chr5-45917053-3	chr5	45916548	45917548	+	789.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	15361.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	20.02	17.51	12.95	10.8	12.13	22.51	8.45	16.36	16.86
Merged-chr3-149103636-2	chr3	149103138	149104138	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-149003.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.58	2.3	5.55	6.07	8.86	3.22	5.28	5.31	9.99
Merged-chr4-126883745-3	chr4	126883236	126884236	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114399, intron 23 of 29)	intron (NM_001114399, intron 23 of 29)	84187.0	NM_001357201	67785.0	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	8.01	5.99	3.7	8.77	6.06	5.63	30.63	15.03	8.74
Merged-chr2-109278206-1	chr2	109277706	109278706	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	84.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	16.59	39.17	3.7	31.04	28.92	19.29	31.69	23.43	26.23
Merged-chr10-7045860-3	chr10	7045364	7046364	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-22679.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	12.01	5.53	5.55	6.07	7.0	8.04	1.06	4.42	6.25
Merged-chr5-36573386-1	chr5	36572886	36573886	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	intron (NM_001113362, intron 2 of 14)	9011.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	36.61	43.31	33.3	51.28	31.26	41.8	54.92	47.75	27.48
Merged-chr4-105149726-3	chr4	105149232	105150232	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-7615.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.29	8.29	7.4	8.1	5.6	4.82	9.51	18.57	2.5
Merged-chr8-124845336-1	chr8	124844836	124845836	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	17693.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	36.04	48.38	53.65	39.81	43.39	43.4	8.45	5.31	3.75
Merged-chr8-60859766-1	chr8	60859266	60860266	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30627.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.29	5.53	3.7	5.4	3.73	0.0	5.28	1.33	5.0
Merged-chr5-16507257-1	chr5	16506757	16507757	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46238.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	8.01	19.35	22.2	26.31	22.39	21.7	10.56	15.03	9.99
Merged-chr10-39455579-1	chr10	39455079	39456079	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	85780.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	7.44	7.37	9.25	12.14	8.4	4.82	14.79	12.38	2.5
Merged-chr11-89084823-1	chr11	89084323	89085323	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033266, intron 2 of 3)	MER44B|DNA|TcMar-Tigger	10982.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	5.15	1.38	0.0	7.42	2.8	8.04	4.22	2.21	1.25
Merged-chr12-102524392-2	chr12	102523895	102524895	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30546.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	1.14	1.38	3.7	6.75	7.93	3.22	3.17	4.86	0.0
Merged-chr16-12574509-1	chr16	12574009	12575009	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-236881.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	2.86	4.15	7.4	6.07	3.73	3.22	6.34	4.86	6.25
Merged-chr5-124075725-1	chr5	124075225	124076225	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019875, intron 9 of 11)	intron (NM_019875, intron 9 of 11)	20073.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	20.59	11.98	4.62	48.58	18.66	12.86	12.67	8.84	7.49
Merged-chr3-86959777-1	chr3	86959277	86960277	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26809.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	4.0	4.15	1.85	16.87	13.53	10.45	3.17	1.77	6.25
Merged-chr6-113837943-3	chr6	113837445	113838445	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 2 of 19)	intron (NM_001036684, intron 2 of 19)	53594.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	4.58	5.07	11.1	12.14	4.2	8.04	10.56	8.4	1.25
Merged-chr10-18931650-1	chr10	18931150	18932150	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80313.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	2.86	3.69	0.0	5.4	6.06	1.61	21.12	13.27	8.74
Merged-chr15-30468456-3	chr15	30467952	30468952	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	295859.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	100.68	111.05	68.45	85.69	111.96	97.26	104.56	136.63	74.32
Merged-chr3-79160181-1	chr3	79159681	79160681	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14306.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	8.58	20.74	11.1	33.74	22.86	28.94	13.73	20.34	16.24
Merged-chr17-56858364-1	chr17	56857864	56858864	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039114, intron 6 of 14)	intron (NM_001039114, intron 6 of 14)	16083.0	NM_001039114	328845.0	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	1.72	2.76	0.92	0.67	1.87	0.8	2.11	3.1	1.25
Merged-chr11-20149786-2	chr11	20149287	20150287	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-36836.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	20.59	13.82	11.1	15.52	13.53	30.54	17.96	23.43	18.11
Merged-chr19-43648551-2	chr19	43648042	43649042	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6535.0	NR_152201	100043245.0	Mm.402688	NR_152201		Gm4311	-	predicted gene 4311	ncRNA	3.43	2.76	1.85	2.7	0.47	5.63	1.06	0.88	4.37
Merged-chr13-55231959-1	chr13	55231459	55232459	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008739, intron 2 of 22)	intron (NM_008739, intron 2 of 22)	22177.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	5.72	10.6	17.57	10.12	12.13	7.23	17.96	11.05	17.49
Merged-chr16-55806544-1	chr16	55806044	55807044	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15594.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.72	9.68	9.25	2.7	6.06	6.43	5.28	6.63	6.25
Merged-chr3-79233928-2	chr3	79233427	79234427	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	21008.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	72.65	70.5	49.02	29.69	19.59	11.25	40.14	33.6	15.61
Merged-chr4-130805951-2	chr4	130805464	130806464	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	Tigger7|DNA|TcMar-Tigger	13427.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	49.2	56.22	69.37	62.07	56.91	85.2	113.01	94.18	68.7
Merged-chr13-21234180-1	chr13	21233680	21234680	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54249.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	4.58	4.61	1.85	5.4	1.4	1.61	0.0	0.88	1.25
Merged-chr11-59578400-1	chr11	59577900	59578900	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6662.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	1.72	3.69	7.4	15.52	8.4	14.47	9.51	14.15	18.11
Merged-chr3-19430356-1	chr3	19429856	19430856	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78239.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	2.86	4.61	0.0	4.72	11.2	3.22	1.06	1.77	2.5
Merged-chr5-105559943-1	chr5	105559443	105560443	+	789.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	40472.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	72.65	55.75	72.15	58.03	25.19	32.15	57.03	61.9	24.36
Merged-chr8-108780718-1	chr8	108780218	108781218	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	66074.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	46.34	56.22	40.7	60.72	50.38	47.42	13.73	3.98	0.62
Merged-chr2-90841365-1	chr2	90840865	90841865	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-5790.0	NM_001317241	56428.0	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	14.3	7.83	24.05	15.52	6.53	24.11	16.9	8.84	7.49
Merged-chr8-106411726-1	chr8	106411226	106412226	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3613.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	87.52	98.61	82.32	95.81	69.98	99.67	124.63	135.3	55.58
Merged-chr7-24971452-3	chr7	24970964	24971964	+	789.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010261, intron 3 of 4)	intron (NM_010261, intron 3 of 4)	1264.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	34.9	33.64	19.42	33.74	27.52	38.58	36.97	22.55	15.61
Merged-chr11-25358269-1	chr11	25357769	25358769	+	789.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045853, intron 5 of 7)	intron (NR_045853, intron 5 of 7)	32162.0	NR_045853	71234.0	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA	0.57	0.92	1.85	1.35	0.93	3.22	10.56	4.42	6.25
Merged-chr8-94330961-3	chr8	94330462	94331462	+	788.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019415, intron 2 of 24)	intron (NM_019415, intron 2 of 24)	1754.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.57	0.46	1.85	4.72	4.67	5.63	3.17	0.44	1.25
Merged-chr6-31108094-3	chr6	31107585	31108585	+	788.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-44992.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	46.34	42.85	36.07	49.93	35.92	46.62	59.15	57.04	29.35
Merged-chr2-73462947-3	chr2	73462463	73463463	+	788.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-9074.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	42.33	34.56	43.47	51.28	31.26	17.68	65.48	33.16	31.23
Merged-chr15-97831620-3	chr15	97831122	97832122	+	788.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001204276, exon 1 of 26)	5' UTR (NM_001204276, exon 1 of 26)	145.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	50.34	16.13	12.95	28.34	13.53	42.6	15.84	3.1	3.75
Merged-chr15-79442128-2	chr15	79441639	79442639	+	788.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013767)	promoter-TSS (NM_013767)	4.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	234.54	159.89	111.92	222.66	143.22	141.47	203.84	129.11	79.32
Merged-chr4-86657362-2	chr4	86656851	86657851	+	788.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007408, exon 8 of 8)	exon (NM_007408, exon 8 of 8)	12708.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	9.72	13.36	19.42	18.89	19.13	37.78	31.69	31.84	16.86
Merged-chr8-67879499-3	chr8	67878995	67879995	+	788.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	31451.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	8.58	14.28	17.57	9.45	18.19	13.66	21.12	26.09	8.74
Merged-chr7-102241863-2	chr7	102241373	102242373	+	788.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	8245.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	21.17	21.2	23.12	37.11	27.52	57.07	29.57	29.63	28.73
Merged-chr15-25831529-2	chr15	25831008	25832008	+	788.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11790.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	16.02	13.36	5.55	29.69	16.33	9.65	17.96	18.13	10.62
Merged-chr4-123941095-3	chr4	123940601	123941601	+	788.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23668.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	16.59	8.29	11.1	3.37	4.67	8.04	5.28	4.42	3.12
Merged-chr7-27606353-1	chr7	27605853	27606853	+	788.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331109)	promoter-TSS (NM_001331109)	556.0	NM_007434	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	7.44	6.91	3.7	8.1	1.4	9.65	49.64	71.63	57.46
Merged-chr14-103843751-2	chr14	103843223	103844223	+	788.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-22.0	NM_001276296	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	8.58	2.76	5.55	8.77	5.6	14.47	9.51	3.1	1.25
Merged-chr8-127815452-3	chr8	127814957	127815957	+	788.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	462768.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	65.21	74.19	22.2	55.33	50.38	45.01	100.34	108.33	36.85
Merged-chr10-79840889-1	chr10	79840389	79841389	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	ZP3AR|Satellite|Satellite	-13543.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	18.31	23.96	37.0	23.62	28.46	49.83	30.63	37.58	29.98
Merged-chrX-106044144-4	chrX	106043624	106044624	+	788.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	L1ME1|LINE|L1	16900.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	24.6	35.02	9.25	31.71	24.26	27.33	26.4	30.51	13.74
Merged-chr5-76178888-1	chr5	76178388	76179388	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4992.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	16.59	17.05	16.65	14.17	10.73	16.08	14.79	4.86	6.25
Merged-chr1-43091496-2	chr1	43090987	43091987	+	788.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	999.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	34.9	32.72	24.05	34.41	24.72	36.17	43.3	21.22	13.74
Merged-chr3-109029734-2	chr3	109029227	109030227	+	788.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2120.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.29	5.07	6.47	27.66	14.93	9.65	15.84	11.05	9.99
Merged-chr1-128729744-3	chr1	128729246	128730246	+	788.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-137447.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	9.72	5.99	1.85	12.82	5.6	9.65	5.28	2.65	4.37
Merged-chr8-83622444-3	chr8	83621926	83622926	+	788.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13878.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	12.59	3.69	8.32	4.72	3.73	6.43	5.28	1.33	4.37
Merged-chr5-136988589-3	chr5	136988086	136989086	+	788.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027318)	promoter-TSS (NM_027318)	-627.0	NM_027318	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	40.62	41.47	21.27	35.09	18.66	27.33	22.18	14.59	21.23
Merged-chr9-116139065-2	chr9	116138556	116139556	+	788.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36307.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	81.8	59.44	56.42	82.32	83.51	65.11	66.54	87.55	48.71
Merged-chr6-46204736-1	chr6	46204236	46205236	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 9 of 23)	ORR1B2|LTR|ERVL-MaLR	-1039660.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.0	5.99	0.0	8.1	4.2	1.61	1.06	0.44	1.25
Merged-chr16-91936559-2	chr16	91936049	91937049	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4919.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	5.15	1.84	1.85	3.37	1.87	0.0	4.22	2.65	1.25
Merged-chr15-41154936-1	chr15	41154436	41155436	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18765.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	1.72	2.76	1.85	3.37	6.06	4.82	6.34	1.77	3.12
Merged-chr6-15746101-1	chr6	15745601	15746601	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	25440.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	12.01	14.28	7.4	12.14	8.4	16.08	7.39	12.82	3.75
Merged-chr4-145111834-1	chr4	145111334	145112334	+	788.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 35 of 69)	intron (NM_001276465, intron 35 of 69)	78832.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	5.15	1.84	3.7	3.37	2.8	13.66	5.28	1.77	8.74
Merged-chr12-104067534-3	chr12	104067079	104068079	+	788.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10380.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	61.21	50.69	64.75	4.72	9.8	9.65	116.18	95.51	48.71
Merged-chr16-94574813-3	chr16	94574309	94575309	+	788.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	3902.0	NM_001113389	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	16.59	18.89	16.65	22.94	16.33	14.47	21.12	14.59	13.12
Merged-chr11-99066169-2	chr11	99065682	99066682	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172564, exon 13 of 13)	3' UTR (NM_172564, exon 13 of 13)	23124.0	NM_172564	217169.0	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	2.86	3.23	2.77	5.4	2.8	5.63	6.34	0.0	8.74
Merged-chr2-73536579-2	chr2	73536077	73537077	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-7090.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	8.01	6.91	1.85	6.75	3.27	3.22	4.22	3.54	8.74
Merged-chr4-84675838-2	chr4	84675339	84676339	+	788.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172870)	promoter-TSS (NM_172870)	-753.0	NM_172870	242509.0	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	1.72	2.76	0.0	4.72	1.4	0.0	0.0	1.33	1.87
Merged-chr5-113736533-2	chr5	113736054	113737054	+	788.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010825, intron 1 of 2)	intron (NM_001010825, intron 1 of 2)	772.0	NM_001010825	231630.0	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	63.5	57.14	55.5	45.21	41.52	49.83	86.61	35.37	31.85
Merged-chr16-24860543-3	chr16	24860028	24861028	+	788.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 9 of 12)	intron (NM_178665, intron 9 of 12)	138673.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	26.31	39.63	19.42	42.51	33.12	25.72	30.63	23.88	18.11
Merged-chr4-132898454-1	chr4	132897954	132898954	+	788.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163792)	TTS (NM_001163792)	-13996.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	1.72	1.38	2.77	4.05	1.4	4.02	48.58	29.18	24.98
Merged-chr13-75708796-1	chr13	75708296	75709296	+	788.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1312.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	26.31	15.21	3.7	32.39	23.79	16.08	40.14	30.07	20.61
Merged-chr2-25422099-2	chr2	25421600	25422600	+	788.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1142.0	NM_001289453	14347.0	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	18.88	4.61	24.97	26.99	9.8	28.13	14.79	15.03	5.0
Merged-chr7-80688200-3	chr7	80687685	80688685	+	788.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 1 of 14)	CpG	692.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	54.35	44.7	68.45	48.58	49.45	55.46	48.58	24.76	40.59
Merged-chr17-26942643-3	chr17	26942157	26943157	+	788.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281491, intron 1 of 18)	intron (NM_001281491, intron 1 of 18)	1205.0	NM_001281491	240057.0	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	30.89	7.83	11.1	16.87	6.53	15.27	28.52	13.71	5.62
Merged-chr6-99649510-3	chr6	99649017	99650017	+	788.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 2 of 6)	intron (NM_025829, intron 2 of 6)	17254.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	14.87	11.98	11.1	11.47	10.73	19.29	13.73	9.29	6.25
Merged-chr8-106581673-3	chr8	106581159	106582159	+	788.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-5484.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	16.02	13.82	24.05	9.45	16.79	22.51	35.91	22.55	36.22
Merged-chr2-145675491-1	chr2	145674991	145675991	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25704.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.44	2.3	4.62	5.4	2.8	5.63	10.56	3.54	3.75
Merged-chr15-98476526-1	chr15	98476026	98477026	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6157.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	9.15	9.22	8.32	16.87	11.2	12.06	7.39	7.07	5.0
Merged-chr5-34236240-1	chr5	34235740	34236740	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	intron (NM_001015039, intron 2 of 12)	-48530.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	3.43	1.84	5.55	6.75	3.27	4.82	3.17	0.88	1.25
Merged-chr19-14650935-1	chr19	14650435	14651435	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1b|DNA|hAT-Charlie	-52752.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	3.43	3.69	1.85	6.75	3.73	3.22	3.17	1.77	4.37
Merged-chr10-52256087-1	chr10	52255587	52256587	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347444, intron 1 of 9)	intron (NM_001347444, intron 1 of 9)	22468.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	3.43	5.99	2.77	12.82	13.06	12.86	6.34	5.31	3.12
Merged-chr3-137946687-1	chr3	137946187	137947187	+	788.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	28132.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	161.89	164.04	110.07	128.87	113.36	110.92	122.52	171.12	93.68
Merged-chr5-23225187-1	chr5	23224687	23225687	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081231, intron 3 of 3)	intron (NM_001081231, intron 3 of 3)	209166.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	3.43	1.38	3.7	4.72	0.47	0.0	1.06	0.44	0.0
Merged-chr2-18890556-1	chr2	18890056	18891056	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-88738.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	14.3	10.6	10.17	13.49	8.86	4.82	4.22	7.07	3.75
Merged-chr15-39968931-1	chr15	39968431	39969431	+	788.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6282.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	30.32	9.22	0.0	69.5	53.18	15.27	7.39	3.1	1.87
Merged-chr17-29975904-2	chr17	29975415	29976415	+	788.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29124.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	5.72	1.84	1.85	3.37	2.33	0.0	4.22	1.77	3.75
Merged-chr3-27298422-3	chr3	27297904	27298904	+	788.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18673.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	4.0	5.07	5.55	4.05	4.67	4.02	15.84	7.07	14.99
Merged-chr15-79544752-3	chr15	79544272	79545272	+	788.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040187, intron 1 of 12)	PB1D9|SINE|Alu	1787.0	NM_199079	67040.0	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	32.04	44.7	22.2	25.64	10.26	10.45	39.08	34.05	30.6
Merged-chr11-21265629-3	chr11	21265130	21266130	+	788.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 3 of 22)	intron (NM_001290628, intron 3 of 22)	26598.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	17.73	18.43	5.55	10.12	12.6	22.51	16.9	20.34	11.24
Merged-chr13-104789883-3	chr13	104789386	104790386	+	788.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	27067.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	9.15	3.69	1.85	6.07	1.87	4.82	3.17	5.75	3.75
Merged-chr5-147574687-2	chr5	147574163	147575163	+	788.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010228, intron 25 of 29)	intron (NM_010228, intron 25 of 29)	144507.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	1.72	2.3	1.85	2.02	3.27	3.22	5.28	6.19	7.49
Merged-chr12-55437306-2	chr12	55436809	55437809	+	788.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38484.0	NM_011968	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	1.14	5.99	14.8	5.4	4.67	4.82	9.51	7.52	6.87
Merged-chr10-93967217-1	chr10	93966717	93967717	+	788.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001304572, exon 12 of 12)	3' UTR (NM_001304572, exon 12 of 12)	-3354.0	NR_029764	723908.0		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	2.86	5.99	0.0	6.75	2.8	1.61	121.46	134.86	57.46
Merged-chr3-133075806-3	chr3	133075295	133076295	+	788.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356309, intron 3 of 11)	B4A|SINE|B4	16030.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	5.72	5.53	8.32	7.42	2.8	0.8	2.11	2.21	8.74
Merged-chr3-65380730-2	chr3	65380232	65381232	+	788.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026155, exon 5 of 5)	3' UTR (NM_026155, exon 5 of 5)	11821.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	17.73	26.26	22.2	40.48	21.46	31.35	41.19	52.18	39.97
Merged-chr7-106711635-3	chr7	106711129	106712129	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	4716.0	NM_146598	258591.0	Mm.223117	NM_146598	ENSMUSG00000108948	Olfr695	MOR283-6	olfactory receptor 695	protein-coding	15.45	10.6	9.25	7.42	5.6	3.22	3.17	3.54	6.25
Merged-chr4-136505983-3	chr4	136505483	136506483	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	MTC|LTR|ERVL-MaLR	36222.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	22.31	28.57	44.4	53.3	52.25	57.07	15.84	26.09	34.97
Merged-chr2-5697425-3	chr2	5696932	5697932	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	17330.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	22.31	23.96	20.35	21.59	24.26	40.19	19.01	19.01	10.62
Merged-chr2-83742969-1	chr2	83742469	83743469	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	18572.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	17.16	22.58	28.67	15.52	15.86	30.54	19.01	15.92	19.36
Merged-chr1-165724922-1	chr1	165724422	165725422	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16828.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	33.18	20.74	19.42	24.29	32.19	27.33	27.46	22.11	18.11
Merged-chr15-64178664-1	chr15	64178164	64179164	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-118216.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.72	10.6	7.4	10.12	11.66	8.04	7.39	7.52	7.49
Merged-chr7-112258770-1	chr7	112258270	112259270	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	32934.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	2.86	3.23	0.0	2.7	7.93	0.0	2.11	2.21	1.25
Merged-chr9-57974516-1	chr9	57974016	57975016	+	788.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-23508.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	1.72	3.69	0.0	3.37	0.47	0.0	1.06	0.44	7.49
Merged-chr6-108702027-1	chr6	108701527	108702527	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-41093.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	9.72	7.37	0.0	17.54	9.8	9.65	3.17	5.31	5.62
Merged-chr6-97454593-1	chr6	97454093	97455093	+	788.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	4693.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	77.23	96.3	116.54	87.71	66.71	93.24	81.33	84.01	88.68
Merged-chr13-30767068-3	chr13	30766584	30767584	+	788.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013674)	TTS (NM_013674)	17851.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	53.77	54.83	40.7	33.06	29.86	45.82	34.85	35.37	31.23
Merged-chr6-81957253-1	chr6	81956753	81957753	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026490)	TTS (NM_026490)	8696.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	16.59	15.21	14.8	28.34	17.26	28.13	2.11	5.75	2.5
Merged-chr8-61612748-1	chr8	61612248	61613248	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-21579.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	1.72	5.99	7.4	1.35	3.27	3.22	7.39	4.86	3.75
Merged-chr15-102074431-1	chr15	102073931	102074931	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145625, intron 1 of 14)	CpG	658.0	NM_145625	75705.0	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	128.71	155.75	110.07	126.17	135.29	137.45	189.06	179.96	99.3
Merged-chr7-6937278-1	chr7	6936778	6937778	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360502, intron 5 of 7)	intron (NM_001360502, intron 5 of 7)	39384.0	NR_036631	116811.0	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	2.86	3.69	0.0	5.4	0.93	0.0	2.11	1.33	1.25
Merged-chr7-98193786-2	chr7	98193252	98194252	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5723.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	8.58	0.92	5.55	10.12	1.4	3.22	4.22	3.1	1.25
Merged-chr13-91908392-2	chr13	91907899	91908899	+	788.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009027, intron 6 of 14)	intron (NM_009027, intron 6 of 14)	-31514.0	NM_198415	76722.0	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	1.14	0.92	0.0	2.02	1.87	1.61	3.17	1.77	3.75
Merged-chr5-114925318-3	chr5	114924806	114925806	+	788.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	2066.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	49.2	48.38	38.85	94.46	59.25	64.3	124.63	91.97	54.96
Merged-chr8-45345203-3	chr8	45344702	45345702	+	788.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153535, intron 8 of 13)	intron (NM_153535, intron 8 of 13)	-12006.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	6.86	2.3	5.55	6.75	2.33	0.0	6.34	4.42	1.25
Merged-chr4-9658714-3	chr4	9658198	9659198	+	788.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	MTD|LTR|ERVL-MaLR	10464.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	50.91	42.39	28.67	70.17	54.11	33.76	82.38	83.57	30.6
Merged-chr15-85091459-2	chr15	85091017	85092017	+	788.178589	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 16 of 24)	intron (NM_080470, intron 16 of 24)	40440.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	40.62	79.25	46.25	51.95	57.38	61.09	94.0	92.86	55.58
Merged-chr15-103510461-3	chr15	103509963	103510963	+	788.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357980, intron 1 of 14)	intron (NM_001357980, intron 1 of 14)	3337.0	NM_001357980	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	9.15	13.36	7.4	7.42	6.53	12.06	10.56	6.63	12.49
Merged-chr5-23114400-3	chr5	23113891	23114891	+	788.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	intron (NM_029990, intron 2 of 2)	319962.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	9.15	17.05	6.47	30.36	31.26	22.51	11.62	15.48	15.61
Merged-chr16-87634279-3	chr16	87633754	87634754	+	788.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64700.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	47.48	26.73	21.27	35.76	16.33	21.7	25.35	14.59	13.12
Merged-chr16-4212398-3	chr16	4211894	4212894	+	788.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	1010.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	18.31	26.73	9.25	22.94	15.39	12.86	17.96	17.24	11.87
Merged-chr13-101914896-3	chr13	101914409	101915409	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-146692.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	26.31	17.51	11.1	18.22	13.06	21.7	14.79	23.43	30.6
Merged-chr2-173785098-3	chr2	173784594	173785594	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019806)	TTS (NM_019806)	47523.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	42.9	28.57	42.55	39.81	37.32	55.46	32.74	26.09	19.98
Merged-chr7-25781575-3	chr7	25781112	25782112	+	788.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	7121.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	20.02	19.35	19.42	26.31	21.46	26.53	42.25	16.36	18.74
Merged-chr14-21742021-3	chr14	21741515	21742515	+	788.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007268, intron 5 of 7)	intron (NM_001007268, intron 5 of 7)	864.0	NM_013849	27389.0	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	1.72	4.61	0.0	4.05	1.87	1.61	7.39	2.65	7.49
Merged-chr6-29507749-3	chr6	29507232	29508232	+	788.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029985, intron 1 of 37)	CpG	220.0	NM_001029985	333088.0	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	19.45	6.45	0.92	24.96	11.2	16.88	15.84	8.84	5.0
Merged-chr17-64894932-1	chr17	64894432	64895432	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58861.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	1.72	5.99	3.7	4.05	4.67	3.22	1.06	3.54	0.0
Merged-chr2-26476251-1	chr2	26475751	26476751	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008714, intron 14 of 33)	intron (NM_008714, intron 14 of 33)	-6132.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	30.89	47.0	49.02	58.03	43.39	67.52	26.4	23.43	26.85
Merged-chr6-129349639-3	chr6	129349136	129350136	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177686)	promoter-TSS (NM_177686)	-608.0	NM_177686	232413.0	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	55.49	41.47	55.5	65.45	35.45	72.34	50.7	55.27	38.1
Merged-chr6-81618174-3	chr6	81617664	81618664	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	277499.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	4.0	10.14	8.32	17.54	10.73	13.66	11.62	6.63	7.49
Merged-chr1-139001164-2	chr1	139000670	139001670	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	23513.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	8.58	19.81	11.1	27.66	25.66	18.49	14.79	13.27	33.1
Merged-chr8-85559401-3	chr8	85558890	85559890	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-4119.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	22.31	28.11	34.22	35.76	22.86	33.76	60.2	68.98	38.72
Merged-chr4-45883434-1	chr4	45882934	45883934	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305421, intron 17 of 18)	intron (NM_001305421, intron 17 of 18)	-6869.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	8.01	3.69	7.4	4.05	7.93	5.63	2.11	1.77	5.0
Merged-chr19-3906466-1	chr19	3905966	3906966	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001136091, intron 1 of 19)	intron (NM_001136091, intron 1 of 19)	517.0	NM_001167784	27060.0	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	169.9	123.03	172.04	136.29	100.77	127.0	229.19	214.01	124.91
Merged-chr7-29162995-2	chr7	29162492	29163492	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5655.0	NM_182927	101809.0	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	5.15	1.84	3.7	4.72	2.33	3.22	0.0	1.33	0.0
Merged-chr10-121961648-1	chr10	121961148	121962148	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	85667.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	7.44	5.53	2.77	8.77	11.2	12.06	3.17	4.42	3.75
Merged-chr8-111941361-1	chr8	111940861	111941861	+	788.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026693, intron 2 of 3)	intron (NM_026693, intron 2 of 3)	658.0	NM_026693	93739.0	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	57.78	68.66	53.65	45.21	55.05	50.64	36.97	43.77	51.21
Merged-chr8-84660782-2	chr8	84660322	84661322	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010499)	TTS (NM_010499)	2030.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	79.52	64.51	40.7	49.93	30.79	46.62	58.09	32.28	26.23
Merged-chr4-132783628-1	chr4	132783128	132784128	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12736.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	38.9	35.94	48.1	55.33	44.32	33.76	68.65	83.13	36.22
Merged-chr2-48350421-2	chr2	48349934	48350934	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-463675.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.29	5.53	5.55	5.4	6.06	9.65	3.17	6.63	7.49
Merged-chr13-91093842-2	chr13	91093352	91094352	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130135.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	24.03	17.05	22.2	22.94	23.33	22.51	15.84	9.73	5.0
Merged-chr2-33295344-2	chr2	33294850	33295850	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	76144.0	NM_001290570	241308.0	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	3.43	9.22	3.7	1.35	2.8	5.63	2.11	1.77	2.5
Merged-chr18-84699621-1	chr18	84699121	84700121	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-13919.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	4.0	4.15	12.95	3.37	7.93	6.43	7.39	7.07	4.37
Merged-chrX-134577838-1	chrX	134577338	134578338	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	5302.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	4.58	11.52	7.4	10.8	7.0	9.65	5.28	9.29	6.87
Merged-chr12-40036846-2	chr12	40036335	40037335	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039515, intron 1 of 1)	intron (NM_001039515, intron 1 of 1)	541.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	51.48	62.67	42.55	56.68	71.84	54.66	50.7	71.19	35.6
Merged-chr11-82140136-1	chr11	82139636	82140636	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24951.0	NM_021443	20307.0	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	14.3	6.45	7.4	14.17	9.33	4.82	10.56	10.17	8.74
Merged-chr17-78882062-2	chr17	78881561	78882561	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011163, intron 1 of 15)	intron (NM_011163, intron 1 of 15)	511.0	NM_011163	19106.0	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	36.61	25.34	48.1	51.28	40.59	45.82	58.09	96.83	22.48
Merged-chr3-107130841-1	chr3	107130341	107131341	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29274.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	6.86	2.76	1.85	23.62	14.0	17.68	27.46	27.41	16.24
Merged-chr6-115995692-1	chr6	115995192	115996192	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026376)	promoter-TSS (NM_026376)	-687.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	143.01	136.85	152.62	150.46	111.5	121.37	134.14	156.53	84.31
Merged-chr13-98299217-3	chr13	98298710	98299710	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17757.0	NM_145455	218490.0	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	1.72	2.3	0.0	4.72	3.73	0.0	2.11	3.1	1.25
Merged-chr3-138442316-1	chr3	138441816	138442816	+	788.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007410)	promoter-TSS (NM_007410)	-777.0	NM_007410	11532.0	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	16.59	11.98	21.27	31.04	31.72	19.29	30.63	28.3	16.24
Merged-chr9-103272189-1	chr9	103271689	103272689	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027918, intron 7 of 16)	intron (NM_027918, intron 7 of 16)	16108.0	NM_027918	71775.0	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	6.86	3.69	12.95	4.05	2.8	4.82	6.34	0.44	2.5
Merged-chr7-106571075-1	chr7	106570575	106571575	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	73570.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	3.43	4.15	2.77	1.35	5.6	1.61	4.22	2.65	2.5
Merged-chr14-27096504-2	chr14	27095982	27096982	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 11 of 12)	intron (NM_134437, intron 11 of 12)	-47511.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	29.75	38.25	14.8	35.76	32.19	53.85	31.69	39.35	15.61
Merged-chr3-21808347-2	chr3	21807835	21808835	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-268317.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	25.74	29.49	11.1	48.58	36.39	20.09	27.46	27.86	20.61
Merged-chr17-33816943-1	chr17	33816443	33817443	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357162, intron 2 of 5)	intron (NM_001357162, intron 2 of 5)	6420.0	NM_030697	80880.0	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	172.19	123.95	117.47	209.16	181.94	222.65	135.19	143.7	81.81
Merged-chr7-100960890-3	chr7	100960391	100961391	+	788.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	RSINE1|SINE|B4	3475.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	114.41	101.83	53.65	160.58	118.96	103.69	99.28	104.79	74.94
Merged-chr15-34453243-1	chr15	34452743	34453743	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173421)	promoter-TSS (NM_173421)	-69.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	4.0	1.84	12.95	4.05	2.8	8.04	3.17	1.33	1.25
Merged-chr7-116094318-1	chr7	116093818	116094818	+	788.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019772, intron 1 of 4)	intron (NM_019772, intron 1 of 4)	938.0	NM_019772	56372.0	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	16.02	27.19	7.4	14.84	15.86	15.27	24.29	12.38	9.99
Merged-chr8-119436283-3	chr8	119435821	119436821	+	787.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027950)	promoter-TSS (NM_027950)	-841.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	102.4	107.36	74.92	114.7	88.17	122.18	166.88	157.41	93.05
Merged-chr3-105904478-3	chr3	105904029	105905029	+	787.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009631, exon 1 of 2)	5' UTR (NM_009631, exon 1 of 2)	108.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	33.75	30.87	28.67	21.59	18.66	20.9	22.18	11.5	19.36
Merged-chr6-58756801-3	chr6	58756318	58757318	+	787.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74647.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	2.29	2.76	1.85	1.35	5.6	0.0	2.11	1.77	5.62
Merged-chr15-103339524-3	chr15	103338927	103339927	+	787.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013866, intron 1 of 7)	intron (NM_013866, intron 1 of 7)	659.0	NM_013866	29813.0	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	24.03	17.51	15.72	12.14	9.33	8.84	19.01	18.57	15.61
Merged-chr5-25166820-2	chr5	25166339	25167339	+	787.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14641.0	NM_026449	67909.0	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	5.15	3.69	3.7	4.05	7.0	11.25	8.45	3.98	3.75
Merged-chr7-4964462-3	chr7	4963967	4964967	+	787.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146329)	promoter-TSS (NM_001146329)	-119.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	1.72	1.38	1.85	2.02	3.73	0.0	4.22	0.88	1.25
Merged-chr2-167570088-3	chr2	167569583	167570583	+	787.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31888.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	6.86	5.99	11.1	13.49	9.33	4.82	7.39	3.54	5.0
Merged-chr4-72412442-3	chr4	72411833	72412833	+	787.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211089.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	53.2	86.63	56.42	74.22	78.37	46.62	70.76	76.94	43.09
Merged-chr13-100795698-3	chr13	100795199	100796199	+	787.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-9213.0	NM_172301	268697.0	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	5.15	10.14	24.97	18.89	7.93	17.68	17.96	8.4	14.36
Merged-chr13-88823750-2	chr13	88823232	88824232	+	787.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037987, intron 1 of 10)	(CA)n|Simple_repeat|Simple_repeat	2260.0	NM_001037987	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	6.29	10.6	12.95	0.67	3.27	3.22	3.17	4.86	2.5
Merged-chr17-71216274-5	chr17	71215745	71216745	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357791, intron 2 of 19)	intron (NM_001357791, intron 2 of 19)	11591.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	73.22	71.88	59.2	68.82	47.12	77.97	119.35	94.62	49.34
Merged-chr8-120116182-2	chr8	120115688	120116688	+	787.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	2036.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	8.58	11.52	1.85	20.92	26.59	19.29	20.07	18.57	10.62
Merged-chr4-114983390-3	chr4	114982883	114983883	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	intron (NM_025647, intron 1 of 5)	3845.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	26.31	49.76	49.95	27.66	35.45	36.17	65.48	64.11	43.09
Merged-chr17-8816787-3	chr17	8816285	8817285	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	A-rich|Low_complexity|Low_complexity	15040.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	4.0	3.23	0.0	8.1	1.4	0.0	7.39	0.44	2.5
Merged-chr5-21175255-3	chr5	21174735	21175735	+	787.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1044.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.43	3.69	5.55	4.72	1.87	7.23	2.11	4.86	0.62
Merged-chr11-103470692-3	chr11	103470192	103471192	+	787.794434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-58028.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	23.45	15.67	19.42	32.39	18.66	27.33	26.4	21.22	16.86
Merged-chr3-94902928-3	chr3	94902443	94903443	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15985.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	3.43	5.07	0.92	5.4	0.47	3.22	5.28	4.86	5.0
Merged-chr1-151228519-3	chr1	151228042	151229042	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90508.0	NR_038011	402734.0	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	14.3	8.75	10.17	18.22	9.8	12.86	11.62	3.98	6.87
Merged-chr13-25857285-3	chr13	25856790	25857790	+	787.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109026.0	NR_045062	100503530.0	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	3.43	2.76	0.0	6.07	7.93	4.02	1.06	2.21	2.5
Merged-chr16-55789690-2	chr16	55789186	55790186	+	787.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32452.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	62.93	52.07	40.7	87.04	41.52	47.42	83.44	43.77	48.09
Merged-chr17-44345558-1	chr17	44345058	44346058	+	787.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	156986.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	0.0	0.0	3.7	4.05	2.33	2.41	0.0	3.54	5.0
Merged-chr19-12467790-4	chr19	12467333	12468333	+	787.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	7054.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	28.6	33.18	24.97	19.57	19.59	48.23	13.73	15.92	11.87
Merged-chr9-32470652-3	chr9	32470193	32471193	+	787.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 2 of 8)	intron (NM_008026, intron 2 of 8)	70759.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	18.31	20.27	23.12	12.14	14.46	24.92	27.46	7.07	9.99
Merged-chr2-6436236-3	chr2	6435737	6436737	+	787.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 13 of 13)	intron (NM_181399, intron 13 of 13)	83501.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	7.44	4.15	1.85	6.75	3.27	1.61	3.17	3.1	2.5
Merged-chr13-14618980-3	chr13	14618468	14619468	+	787.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008944, intron 3 of 7)	B3|SINE|B2	5726.0	NM_008944	19166.0	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	8.58	7.37	2.77	8.1	7.46	4.02	3.17	0.44	6.25
Merged-chr14-47241697-1	chr14	47241197	47242197	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172598, exon 25 of 25)	exon (NM_172598, exon 25 of 25)	35160.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	32.04	35.02	16.65	25.64	33.59	48.23	14.79	13.27	12.49
Merged-chr4-130861774-3	chr4	130861359	130862359	+	787.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-51475.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.58	1.38	3.7	1.35	2.33	3.22	7.39	0.88	0.0
Merged-chr8-71542204-1	chr8	71541704	71542704	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028617)	promoter-TSS (NM_028617)	-726.0	NM_028617	73711.0	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	58.92	58.06	57.35	105.93	64.84	94.85	80.27	113.64	68.7
Merged-chr2-11630225-1	chr2	11629725	11630725	+	787.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12567.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	1.14	3.23	3.7	3.37	3.27	0.0	4.22	4.86	3.12
Merged-chr1-47934698-1	chr1	47934198	47935198	+	787.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-467573.0	NR_105768	102466969.0		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	1.14	4.15	1.85	2.7	6.53	7.23	11.62	8.4	7.49
Merged-chr6-39226055-2	chr6	39225563	39226563	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19290.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	72.08	58.06	44.4	78.94	76.97	61.09	76.05	57.04	18.74
Merged-chr13-112058294-2	chr13	112057795	112058795	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	190359.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.44	3.69	1.85	7.42	3.27	14.47	4.22	0.88	3.75
Merged-chr8-108980868-2	chr8	108980381	108981381	+	787.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	44021.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	2.86	11.52	10.17	11.47	12.6	5.63	15.84	15.03	16.24
Merged-chr16-87623969-3	chr16	87623564	87624564	+	787.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	70734.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	32.04	45.62	17.57	46.56	49.92	61.09	44.36	37.58	20.61
Merged-chr10-121316560-3	chr10	121316072	121317072	+	787.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-5176.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.43	7.83	7.4	8.1	8.86	6.43	4.22	4.42	2.5
Merged-chr16-77444210-3	chr16	77443721	77444721	+	787.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114893.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	11.44	4.61	3.7	4.05	0.47	1.61	5.28	5.75	7.49
Merged-chr6-115759733-2	chr6	115759222	115760222	+	787.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144805)	promoter-TSS (NM_144805)	-723.0	NM_144805	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	6.29	5.53	4.62	7.42	7.46	1.61	6.34	5.75	8.74
Merged-chr7-100123715-3	chr7	100123215	100124215	+	787.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2215.0	NM_133692	67967.0	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	4.0	0.92	1.85	5.4	3.27	1.61	5.28	4.86	1.25
Merged-chr9-104261603-3	chr9	104261102	104262102	+	787.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	intron (NM_001359740, intron 1 of 56)	1328.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	44.05	45.16	38.85	41.83	50.85	47.42	63.37	68.54	39.35
Merged-chr9-45267273-1	chr9	45266773	45267773	+	787.555542	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106054)	promoter-TSS (NR_106054)	-566.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	173.9	200.44	135.97	216.58	191.73	213.0	256.65	251.59	179.86
Merged-chr14-31414871-3	chr14	31414372	31415372	+	787.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	2805.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	55.49	67.27	72.15	85.01	74.64	94.85	94.0	87.55	67.45
Merged-chr6-34922128-3	chr6	34921630	34922630	+	787.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	1182.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.0	2.76	0.0	1.35	0.93	4.82	2.11	0.44	2.5
Merged-chr1-167220628-2	chr1	167220106	167221106	+	787.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64521.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	6.86	1.84	5.55	6.75	1.4	0.8	3.17	0.0	3.75
Merged-chr1-43322234-3	chr1	43321721	43322721	+	787.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-123530.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	80.66	126.25	64.75	76.92	40.12	42.6	97.17	100.81	57.46
Merged-chr4-141782973-3	chr4	141782482	141783482	+	787.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172338, exon 4 of 15)	exon (NM_172338, exon 4 of 15)	7662.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	25.74	18.89	26.82	37.78	32.19	32.15	19.01	20.78	7.49
Merged-chrX-36330233-2	chrX	36329726	36330726	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028894, intron 1 of 10)	CpG	1817.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	2.86	4.15	0.0	6.75	5.6	3.22	2.11	3.54	1.25
Merged-chr16-10695172-2	chr16	10694667	10695667	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177562, intron 21 of 22)	intron (NM_177562, intron 21 of 22)	90369.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	9.72	5.53	13.87	8.77	7.46	12.86	7.39	6.19	3.12
Merged-chr3-105931297-2	chr3	105930787	105931787	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033780, intron 1 of 5)	intron (NM_001033780, intron 1 of 5)	1377.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	19.45	25.34	15.72	48.58	52.25	42.6	48.58	53.06	52.46
Merged-chr15-9129145-2	chr15	9128658	9129658	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	11296.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	94.39	140.08	98.05	41.16	49.92	45.82	16.9	13.27	20.61
Merged-chr4-33497494-3	chr4	33496980	33497980	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	L1M3|LINE|L1	59399.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	31.46	38.71	30.52	35.09	38.25	20.9	36.97	34.93	14.36
Merged-chr10-39520528-2	chr10	39520020	39521020	+	787.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 5 of 13)	intron (NM_001122893, intron 5 of 13)	-92414.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	4.58	2.76	6.47	6.75	1.87	3.22	4.22	0.88	1.25
Merged-chr2-78060272-2	chr2	78059767	78060767	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	9090.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	3.43	7.83	3.7	8.1	10.26	12.86	4.22	8.4	9.37
Merged-chr10-25116240-1	chr10	25115740	25116740	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83930.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.0	5.07	1.85	4.72	6.06	6.43	4.22	1.33	7.49
Merged-chr4-40963124-2	chr4	40962632	40963632	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029814, intron 7 of 7)	MTC|LTR|ERVL-MaLR	-7774.0	NM_001290449	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	13.16	12.44	24.05	16.87	8.86	14.47	19.01	18.13	28.73
Merged-chr11-62921215-2	chr11	62920720	62921720	+	787.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29973.0	NM_025496	66338.0	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	6.29	2.3	1.85	2.7	1.87	1.61	6.34	1.77	2.5
Merged-chr2-32404891-3	chr2	32404384	32405384	+	787.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8994.0	NM_133783	96979.0	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	6.86	3.23	3.7	6.07	5.13	2.41	4.22	0.44	3.12
Merged-chr5-74471003-2	chr5	74470513	74471513	+	787.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 3 of 8)	L1M2|LINE|L1	60729.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	6.29	10.14	17.57	8.77	7.46	8.04	6.34	8.84	10.62
Merged-chr18-11840760-2	chr18	11840247	11841247	+	787.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_035447)	promoter-TSS (NR_035447)	-309.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	18.88	22.12	20.35	19.57	34.06	27.33	14.79	16.8	12.49
Merged-chr4-75463748-3	chr4	75463240	75464240	+	787.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-185448.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	6.29	5.07	1.85	6.75	2.8	4.82	9.51	3.1	2.5
Merged-chr15-78352372-3	chr15	78351868	78352868	+	787.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3769.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	26.31	31.79	35.15	29.69	13.06	26.53	41.19	27.41	38.1
Merged-chr12-116282135-2	chr12	116281654	116282654	+	787.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	932.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	18.88	22.58	18.5	14.17	20.06	18.49	19.01	14.59	11.24
Merged-chr4-101717744-2	chr4	101717210	101718210	+	787.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122899, exon 1 of 19)	5' UTR (NM_001122899, exon 1 of 19)	303.0	NM_010704	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	5.15	8.75	5.55	24.96	43.85	36.17	7.39	16.36	33.72
Merged-chr1-87829779-1	chr1	87829279	87830279	+	787.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009118, intron 10 of 15)	intron (NM_009118, intron 10 of 15)	-23508.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	6.29	6.91	5.55	10.8	12.13	11.25	7.39	5.31	18.74
Merged-chr7-44825073-3	chr7	44824562	44825562	+	787.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-8404.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	26.31	18.43	17.57	10.12	16.33	27.33	15.84	6.63	8.74
Merged-chr9-44267090-3	chr9	44266599	44267599	+	787.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163742, intron 1 of 9)	intron (NM_001163742, intron 1 of 9)	1088.0	NM_001163743	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	38.33	27.19	18.5	29.01	23.79	36.17	32.74	38.47	23.11
Merged-chr10-88741613-3	chr10	88741135	88742135	+	787.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025859, intron 4 of 5)	C-rich|Low_complexity|Low_complexity	10221.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	7.44	8.29	8.32	14.17	9.8	12.06	11.62	10.61	11.24
Merged-chr5-151686871-3	chr5	151686364	151687364	+	787.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35656.0	NM_027009	69263.0	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	5.72	4.61	3.7	3.37	2.8	2.41	5.28	1.77	3.75
Merged-chr5-9266073-2	chr5	9265570	9266570	+	787.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359887)	promoter-TSS (NM_001359887)	-48.0	NR_153370	231014.0	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	1.72	2.3	2.77	1.35	1.87	3.22	3.17	0.88	7.49
Merged-chr8-75213918-2	chr8	75213391	75214391	+	787.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029182)	promoter-TSS (NM_029182)	-53.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	6.29	7.83	3.7	14.17	14.0	8.84	24.29	7.96	1.25
Merged-chr4-145239466-2	chr4	145238956	145239956	+	787.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	7414.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	102.97	124.87	99.89	83.66	85.84	128.61	107.73	126.02	66.2
Merged-chr3-55153128-1	chr3	55152628	55153628	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10887.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	2.86	3.69	1.85	5.4	6.06	7.23	5.28	2.65	1.25
Merged-chr4-74297103-3	chr4	74296596	74297596	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 3 of 20)	intron (NM_001356561, intron 3 of 20)	45217.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	17.16	9.22	12.95	10.8	13.06	11.25	19.01	11.94	2.5
Merged-chr17-67157108-1	chr17	67156608	67157608	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-130873.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	5.15	6.91	3.7	12.14	9.33	3.22	8.45	7.96	15.61
Merged-chr13-100697625-1	chr13	100697125	100698125	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183115)	TTS (NM_183115)	28144.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	14.87	10.14	19.42	23.62	20.06	16.08	57.03	55.71	31.85
Merged-chr2-13170141-1	chr2	13169641	13170641	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009105, intron 7 of 8)	intron (NM_009105, intron 7 of 8)	101274.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.43	8.29	5.55	2.7	2.33	4.82	7.39	1.77	6.25
Merged-chr13-113669860-1	chr13	113669360	113670360	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6184.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	4.58	1.38	0.0	6.75	2.8	3.22	0.0	0.0	5.0
Merged-chr17-34307434-1	chr17	34306934	34307934	+	787.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	1567.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	40.62	33.64	98.05	25.64	16.79	16.08	49.64	78.26	22.48
Merged-chr17-26601067-1	chr17	26600567	26601567	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	39555.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	16.02	8.75	7.4	19.57	17.73	4.82	8.45	2.65	1.25
Merged-chr14-48457428-3	chr14	48456903	48457903	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	11051.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	50.91	61.28	81.4	49.93	56.45	66.71	71.82	49.52	49.96
Merged-chr6-108576902-1	chr6	108576402	108577402	+	787.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104577)	TTS (NR_104577)	46265.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	8.58	3.69	7.4	12.82	4.2	11.25	5.28	1.77	7.49
Merged-chr4-53134267-3	chr4	53133777	53134777	+	787.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25618.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	106.97	127.18	99.89	118.75	101.7	151.92	123.57	111.43	96.8
Merged-chr14-16457289-2	chr14	16456785	16457785	+	787.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	92079.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	8.01	13.36	8.32	3.37	4.2	11.25	6.34	0.88	8.74
Merged-chr6-53612282-3	chr6	53611780	53612780	+	787.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 7 of 10)	intron (NM_001327821, intron 7 of 10)	38906.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	12.01	16.59	11.1	19.57	14.0	19.29	16.9	15.92	16.24
Merged-chr5-77354649-3	chr5	77354124	77355124	+	787.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159518, intron 3 of 5)	intron (NM_001159518, intron 3 of 5)	44140.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	1.72	4.15	3.7	2.02	2.33	0.0	0.0	2.21	1.25
Merged-chrX-12006361-3	chrX	12005857	12006857	+	787.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	74196.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	21.17	21.2	7.4	24.96	27.52	49.83	53.87	51.29	27.48
Merged-chr4-107213500-2	chr4	107213077	107214077	+	787.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081272, intron 2 of 4)	intron (NM_001081272, intron 2 of 4)	4397.0	NM_001081272	546840.0	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	-	low density lipoprotein receptor class A domain containing 1	protein-coding	5.72	3.23	0.0	6.07	3.27	4.02	6.34	1.33	1.25
Merged-chr3-93375419-1	chr3	93374919	93375919	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-18280.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	3.43	4.15	2.77	6.75	2.8	3.22	3.17	3.54	4.37
Merged-chr1-131345596-1	chr1	131345096	131346096	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 9 of 22)	intron (NM_001081011, intron 9 of 22)	-66033.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	8.58	5.53	11.1	7.42	7.46	4.02	6.34	3.98	12.49
Merged-chr9-99488971-2	chr9	99488469	99489469	+	787.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	18548.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	21.74	20.74	2.77	20.24	10.26	10.45	29.57	20.78	13.74
Merged-chr7-96484992-2	chr7	96484496	96485496	+	787.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 3 of 32)	intron (NM_011858, intron 3 of 32)	-143032.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	19.45	16.59	12.95	8.77	14.93	13.66	3.17	4.42	1.25
Merged-chr6-67056297-3	chr6	67055793	67056793	+	787.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-18886.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	18.88	4.15	5.55	9.45	5.6	4.02	8.45	1.77	5.0
Merged-chr8-94195039-3	chr8	94194527	94195527	+	787.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	15938.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	10.3	5.53	3.7	8.77	8.86	3.22	9.51	5.75	4.37
Merged-chr4-32303888-1	chr4	32303388	32304388	+	787.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113547.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.86	2.76	1.85	7.42	4.67	4.82	3.17	4.42	0.0
Merged-chr15-98517531-3	chr15	98517001	98518001	+	787.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289437)	TTS (NM_001289437)	2333.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	32.04	20.27	25.9	20.92	22.86	23.31	28.52	29.63	13.74
Merged-chr5-64234345-3	chr5	64233850	64234850	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	L2a|LINE|L2	3993.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	40.04	41.01	37.92	66.8	37.79	65.91	88.72	69.42	56.21
Merged-chr10-37146203-3	chr10	37145714	37146714	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7288.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	17.16	24.88	13.87	24.96	14.0	35.37	22.18	22.11	18.74
Merged-chr13-41000292-4	chr13	40999755	41000755	+	787.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026550)	promoter-TSS (NM_026550)	-755.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	94.39	126.25	85.1	80.97	104.5	129.41	86.61	99.05	79.32
Merged-chr6-15739337-3	chr6	15738843	15739843	+	787.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	ORR1E|LTR|ERVL-MaLR	18682.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	9.15	11.98	12.95	10.12	16.79	14.47	10.56	8.4	9.37
Merged-chr6-115367482-3	chr6	115366978	115367978	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	5129.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	30.89	20.74	21.27	44.53	18.66	18.49	21.12	29.63	9.99
Merged-chr2-148572947-3	chr2	148572442	148573442	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99673.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	25.74	18.43	7.4	20.24	18.66	13.66	43.3	30.95	31.23
Merged-chr11-70587180-3	chr11	70586682	70587682	+	787.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	RMER15|LTR|ERVL	24301.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	96.11	127.64	69.37	82.99	62.98	81.18	123.57	117.62	70.57
Merged-chr15-58882503-2	chr15	58882006	58883006	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-6723.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	19.45	10.14	12.02	21.59	10.73	21.7	26.4	12.38	14.99
Merged-chr2-26055276-2	chr2	26054762	26055762	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026495)	TTS (NM_026495)	-33502.0	NM_133835	98766.0	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	2.29	2.3	3.7	4.05	1.4	7.23	2.11	4.86	1.25
Merged-chr7-64155972-2	chr7	64155475	64156475	+	787.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039104, intron 1 of 26)	intron (NM_001039104, intron 1 of 26)	2140.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	2.29	4.15	3.7	8.1	3.27	5.63	4.22	1.33	0.0
Merged-chr4-126057959-3	chr4	126057453	126058453	+	787.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356446)	promoter-TSS (NM_001356446)	-612.0	NM_001356446	230751.0	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	17.16	15.21	15.72	22.94	7.93	15.27	25.35	32.28	16.86
Merged-chr11-115083622-3	chr11	115083170	115084170	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7761.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	18.31	7.83	10.17	6.75	1.4	4.82	1.06	5.31	1.25
Merged-chr15-76294769-3	chr15	76294266	76295266	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195537, exon 1 of 7)	exon (NM_001195537, exon 1 of 7)	332.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	29.17	29.49	30.52	32.39	49.92	56.27	39.08	27.41	33.1
Merged-chr1-59895612-3	chr1	59895105	59896105	+	787.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17401.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	13.73	4.61	8.32	16.87	9.8	14.47	11.62	6.63	14.36
Merged-chr1-184824735-3	chr1	184824230	184825230	+	787.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2242.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	10.3	7.83	1.85	8.77	5.6	8.04	3.17	5.75	3.75
Merged-chr3-144696815-3	chr3	144696334	144697334	+	787.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 9 of 10)	intron (NM_001282037, intron 9 of 10)	23501.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	118.99	117.5	86.02	146.41	123.16	131.82	139.42	170.23	74.94
Merged-chr13-33934815-1	chr13	33934315	33935315	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-1217.0	NR_040707	68808.0	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	51.48	73.26	56.42	65.45	78.84	74.75	126.74	138.84	59.33
Merged-chr5-41267992-1	chr5	41267492	41268492	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	439699.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.72	1.38	1.85	0.0	1.87	1.61	6.34	3.1	5.0
Merged-chr2-27697310-1	chr2	27696810	27697810	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-11982.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	34.32	33.64	41.62	42.51	41.99	57.07	50.7	44.22	43.72
Merged-chr7-4370630-1	chr7	4370130	4371130	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163014, intron 6 of 7)	MTA_Mm|LTR|ERVL-MaLR	27114.0	NM_001163014	243816.0	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	2.29	5.99	3.7	8.1	4.2	1.61	9.51	8.4	1.25
Merged-chr17-43040222-1	chr17	43039722	43040722	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	23667.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	105.26	68.2	63.82	118.08	80.71	102.08	78.16	77.38	54.33
Merged-chr1-193799202-1	chr1	193798702	193799702	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER115|DNA|hAT-Tip100	-291672.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	6.29	1.84	2.77	4.05	3.27	8.04	3.17	3.98	1.87
Merged-chr17-51790271-1	chr17	51789771	51790771	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357637, intron 5 of 10)	intron (NM_001357637, intron 5 of 10)	21783.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	6.86	15.21	27.75	9.45	5.6	9.65	8.45	7.96	5.62
Merged-chr5-122114420-1	chr5	122113920	122114920	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183307, intron 9 of 12)	intron (NM_183307, intron 9 of 12)	13469.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	7.44	0.46	5.55	2.02	1.87	0.0	2.11	2.21	5.0
Merged-chr4-126083968-1	chr4	126083468	126084468	+	787.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172701, intron 6 of 9)	ID_B1|SINE|B4	-12685.0	NM_001163266	116748.0	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	13.73	11.52	9.25	12.82	3.73	8.04	31.69	24.32	17.49
Merged-chr10-100950034-1	chr10	100949534	100950534	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-208399.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	6.29	2.3	0.0	5.4	2.8	1.61	4.22	2.65	1.25
Merged-chr5-124432575-3	chr5	124432069	124433069	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6612.0	NM_001081203	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	6.86	3.69	3.7	5.4	1.87	4.82	5.28	5.31	2.5
Merged-chr7-44311043-1	chr7	44310543	44311543	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	779.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	3.43	3.23	3.7	2.7	2.33	0.0	5.28	0.44	5.0
Merged-chr11-75075539-1	chr11	75075039	75076039	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	-9548.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	49.77	59.9	49.95	44.53	41.05	49.83	35.91	58.81	38.1
Merged-chr1-189659969-1	chr1	189659469	189660469	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 12 of 18)	exon (NM_001081363, exon 12 of 18)	28117.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	12.59	30.87	18.5	18.89	15.86	19.29	27.46	15.92	21.86
Merged-chr13-5837539-2	chr13	5837044	5838044	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	20548.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.86	6.45	1.85	2.02	4.2	3.22	6.34	1.33	3.75
Merged-chr12-80327100-2	chr12	80326597	80327597	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	64580.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	46.34	43.31	68.45	59.38	46.18	38.58	118.29	93.3	52.46
Merged-chr11-46799027-1	chr11	46798527	46799527	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11772.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	64.07	64.51	57.35	46.56	34.06	61.89	58.09	49.52	68.7
Merged-chr12-78747546-2	chr12	78747047	78748047	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	2.86	4.61	0.0	8.1	4.67	0.8	6.34	2.21	2.5
Merged-chr10-12813657-1	chr10	12813157	12814157	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	48078.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	21.17	7.37	12.02	22.27	18.66	12.06	20.07	14.15	8.74
Merged-chr17-56033060-3	chr17	56032555	56033555	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	3582.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	21.17	11.98	13.87	14.17	10.73	20.9	12.67	6.19	6.87
Merged-chr12-35021544-2	chr12	35021048	35022048	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25641.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	36.61	33.64	0.92	51.95	42.45	41.8	6.34	6.63	2.5
Merged-chr11-51936312-1	chr11	51935812	51936812	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31319.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	6.86	8.75	9.25	16.19	10.26	4.02	11.62	7.07	9.99
Merged-chr4-148591968-1	chr4	148591468	148592468	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009272, intron 1 of 6)	CpG	455.0	NM_009272	20810.0	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	43.48	36.4	46.25	58.03	41.99	52.25	70.76	46.87	19.36
Merged-chr18-38419703-2	chr18	38419211	38420211	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	804.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	287.74	348.35	174.82	293.5	303.23	232.29	307.35	351.08	186.11
Merged-chr3-9897214-2	chr3	9896711	9897711	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-63532.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	10.3	10.14	16.65	15.52	14.46	14.47	14.79	13.71	13.74
Merged-chr7-28370081-1	chr7	28369581	28370581	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001083912, exon 4 of 19)	exon (NM_001083912, exon 4 of 19)	2581.0	NM_138752	101497.0	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	6.29	1.38	5.55	1.35	0.47	1.61	2.11	1.77	1.25
Merged-chr9-57431446-1	chr9	57430946	57431946	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	8290.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	15.45	15.21	11.1	12.82	12.6	12.06	22.18	25.2	7.49
Merged-chr13-3766053-1	chr13	3765553	3766553	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38265.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	1.72	6.91	3.7	2.7	2.33	0.0	1.06	0.44	1.87
Merged-chr8-82373000-2	chr8	82372511	82373511	+	787.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	29575.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	30.89	50.23	35.15	22.27	18.19	26.53	33.8	28.3	24.36
Merged-chr5-8082901-1	chr5	8082401	8083401	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310440, intron 29 of 30)	intron (NM_001310440, intron 29 of 30)	26359.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	9.72	3.69	9.25	10.8	6.06	12.06	7.39	6.19	2.5
Merged-chr7-122233832-1	chr7	122233332	122234332	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	14336.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	8.01	6.91	14.8	6.07	10.73	6.43	9.51	7.52	3.75
Merged-chr10-121409826-1	chr10	121409326	121410326	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_138956)	TTS (NM_138956)	44736.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	4.0	2.76	3.7	3.37	1.4	4.82	2.11	2.65	2.5
Merged-chr15-81080669-2	chr15	81080182	81081182	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	24365.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	51.48	20.27	14.8	59.38	37.32	28.13	40.14	22.55	15.61
Merged-chr16-52470389-1	chr16	52469889	52470889	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17308.0	NM_001331110	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	2.29	4.61	7.4	6.07	8.4	4.82	3.17	7.52	0.62
Merged-chr19-46901580-1	chr19	46901080	46902080	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029810, intron 5 of 17)	intron (NM_029810, intron 5 of 17)	60771.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	2.86	6.91	3.7	12.14	7.46	3.22	4.22	4.86	8.74
Merged-chr10-19691470-1	chr10	19690970	19691970	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21117.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	254.56	245.14	147.99	258.42	224.86	143.88	218.63	246.29	111.79
Merged-chr11-54863128-1	chr11	54862628	54863628	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-2537.0	NM_029327	75530.0	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	9.72	9.22	3.7	10.12	6.06	7.23	10.56	3.98	14.99
Merged-chr1-123932402-1	chr1	123931902	123932902	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	(TC)n|Simple_repeat|Simple_repeat	113157.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.0	7.37	3.7	4.72	0.93	6.43	10.56	4.42	2.5
Merged-chr16-45122699-1	chr16	45122199	45123199	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026439, intron 5 of 7)	intron (NM_026439, intron 5 of 7)	28688.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	1.14	2.76	14.8	5.4	5.13	7.23	1.06	2.65	0.62
Merged-chr3-102734889-1	chr3	102734389	102735389	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	119.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	5.15	0.92	0.0	4.05	2.33	0.0	4.22	0.88	3.75
Merged-chr12-75637219-1	chr12	75636719	75637719	+	787.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	-5470.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	4.58	5.07	12.95	3.37	0.0	6.43	3.17	3.54	6.87
Merged-chr9-44094919-3	chr9	44094412	44095412	+	786.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-6858.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	11.44	9.22	6.47	15.52	10.73	18.49	9.51	2.21	9.99
Merged-chr10-127555903-3	chr10	127555409	127556409	+	786.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 54 of 88)	intron (NM_008512, intron 54 of 88)	-21350.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	6.86	3.23	11.1	4.05	2.33	11.25	3.17	7.07	3.75
Merged-chr4-84077452-2	chr4	84076945	84077945	+	786.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32566.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	21.17	17.05	9.25	13.49	14.46	18.49	1.06	1.33	1.87
Merged-chr2-62441454-3	chr2	62440951	62441951	+	786.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29220.0	NM_001159543	13482.0	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	1.72	5.53	7.4	2.7	0.93	4.82	2.11	0.0	0.62
Merged-chr3-116437140-3	chr3	116436644	116437644	+	786.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER72|LTR|ERV1	-13112.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	36.04	48.84	58.27	22.94	35.92	36.17	33.8	44.22	43.09
Merged-chr9-59760744-3	chr9	59760263	59761263	+	786.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	9589.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	52.63	59.44	33.3	68.15	37.32	37.78	82.38	59.69	40.59
Merged-chr4-86538158-2	chr4	86537662	86538662	+	786.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	B2_Mm2|SINE|B2	20141.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	1.14	1.38	0.0	4.72	1.4	4.82	6.34	1.33	4.37
Merged-chr18-80715007-3	chr18	80714515	80715515	+	786.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1944.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	9.15	10.14	0.0	11.47	2.33	7.23	14.79	3.54	5.0
Merged-chr11-115297558-3	chr11	115296950	115297950	+	786.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178035)	promoter-TSS (NM_178035)	96.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	13.73	1.84	0.0	10.8	8.86	4.82	6.34	7.96	6.87
Merged-chr15-86213417-3	chr15	86212879	86213879	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1080.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	243.12	299.51	232.16	236.15	277.57	255.6	322.14	364.35	154.88
Merged-chr17-7873889-3	chr17	7873361	7874361	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52139.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	17.16	8.75	8.32	19.57	14.93	11.25	21.12	10.61	8.74
Merged-chr8-119827560-3	chr8	119827076	119828076	+	786.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	13003.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	97.25	109.21	117.47	150.46	83.04	118.96	156.32	138.4	95.55
Merged-chr19-34198178-3	chr19	34197682	34198682	+	786.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	Lx5c|LINE|L1	5248.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	53.2	48.84	60.12	51.95	36.39	49.03	72.88	65.0	58.08
Merged-chr5-38483734-3	chr5	38483246	38484246	+	786.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012363)	promoter-TSS (NM_001012363)	-361.0	NM_001012363	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.72	7.37	9.25	7.42	5.6	3.22	9.51	7.07	9.99
Merged-chr16-38091996-3	chr16	38091487	38092487	+	786.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-2727.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	44.62	70.96	48.1	52.63	41.05	49.03	83.44	76.94	44.97
Merged-chr2-35827028-3	chr2	35826540	35827540	+	786.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 6 of 9)	intron (NM_029774, intron 6 of 9)	7850.0	NR_040618	77665.0	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	3.43	5.99	0.92	9.45	6.06	1.61	2.11	0.88	1.25
Merged-chr7-25577063-1	chr7	25576563	25577563	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37059.0	NM_001113369	26367.0	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	5.15	3.23	9.25	8.77	10.73	4.82	8.45	3.54	2.5
Merged-chr1-32249750-2	chr1	32249240	32250240	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133235, intron 2 of 8)	Lx6|LINE|L1	77018.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	4.0	7.37	5.55	10.8	6.06	12.86	17.96	14.15	8.12
Merged-chr8-26950025-2	chr8	26949531	26950531	+	786.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-27305.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	12.01	8.75	3.7	15.52	9.33	11.25	3.17	1.77	6.25
Merged-chr2-17741674-3	chr2	17741172	17742172	+	786.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10604.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	13.73	13.82	1.85	17.54	6.53	4.02	11.62	10.17	7.49
Merged-chr5-148746949-2	chr5	148746459	148747459	+	786.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44D|LTR|ERVK	5119.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	11.44	6.91	1.85	6.07	9.8	8.04	22.18	31.84	11.87
Merged-chr12-34847494-3	chr12	34846998	34847998	+	786.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69597.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	18.31	21.66	14.8	18.22	15.39	19.29	23.24	18.57	17.49
Merged-chr4-128957393-3	chr4	128956887	128957887	+	786.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301841, intron 2 of 8)	intron (NM_001301841, intron 2 of 8)	5068.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	5.15	3.23	6.47	10.12	3.73	4.82	6.34	3.1	0.0
Merged-chr7-92565039-3	chr7	92564542	92565542	+	786.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025515, intron 1 of 8)	intron (NM_025515, intron 1 of 8)	3893.0	NM_001162918	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	21.74	16.59	14.8	10.8	10.26	14.47	10.56	11.94	8.12
Merged-chr1-172206344-3	chr1	172205853	172206853	+	786.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	451.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	234.54	216.11	157.24	219.96	175.41	142.27	167.93	168.02	73.07
Merged-chr18-88932319-1	chr18	88931819	88932819	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38112.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	6.86	3.69	3.7	12.14	6.53	6.43	1.06	2.65	5.0
Merged-chr12-91184681-1	chr12	91184181	91185181	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	74452.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	32.61	30.41	38.85	35.09	31.26	41.8	17.96	15.48	13.12
Merged-chr3-137293346-1	chr3	137292846	137293846	+	786.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47732.0	NM_001163522	59308.0	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	6.29	6.91	3.7	1.35	2.8	4.82	1.06	4.86	3.75
Merged-chr13-89539294-3	chr13	89538803	89539803	+	786.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1333.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.86	3.69	5.55	1.35	6.06	1.61	3.17	11.5	13.74
Merged-chr5-103680519-3	chr5	103680025	103681025	+	786.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-24793.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	3.43	2.3	3.7	8.1	0.93	2.41	8.45	3.1	8.12
Merged-chr9-111310138-3	chr9	111309648	111310648	+	786.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-1591.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	4.0	8.29	3.7	6.07	3.27	1.61	2.11	1.77	5.0
Merged-chr10-76344905-2	chr10	76344409	76345409	+	786.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081419, intron 1 of 37)	CpG	382.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	24.6	10.6	12.95	17.54	21.46	32.96	32.74	19.46	14.36
Merged-chr3-101003952-4	chr3	101003461	101004461	+	786.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 7 of 8)	intron (NM_001167906, intron 7 of 8)	25534.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	21.17	15.21	8.32	18.22	12.13	12.86	6.34	18.57	7.49
Merged-chr12-96615948-1	chr12	96615448	96616448	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-568726.0	NR_103800	69423.0	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	8.01	14.28	6.47	15.52	15.86	6.43	5.28	9.73	6.87
Merged-chr8-122475568-2	chr8	122475068	122476068	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153775)	promoter-TSS (NM_153775)	496.0	NM_001033142	68718.0	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	365.54	314.72	315.41	321.17	229.06	214.61	285.17	222.41	141.14
Merged-chr5-143547596-3	chr5	143547111	143548111	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1095.0	NM_133703	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	10.87	6.45	2.77	16.87	3.73	4.82	5.28	2.21	4.37
Merged-chr19-3379212-2	chr19	3378720	3379720	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013495, intron 15 of 18)	intron (NM_013495, intron 15 of 18)	-9637.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	64.64	65.89	54.57	51.95	45.72	98.06	74.99	69.86	53.71
Merged-chr5-43031422-1	chr5	43030922	43031922	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202041.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	4.0	3.23	1.85	4.72	6.06	5.63	4.22	3.1	1.87
Merged-chr2-164798763-2	chr2	164798249	164799249	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133240, intron 3 of 5)	B2_Mm2|SINE|B2	6132.0	NM_133240	170789.0	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	6.29	1.38	4.62	4.05	0.0	8.04	6.34	0.88	6.87
Merged-chrX-150813992-3	chrX	150813485	150814485	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358566)	promoter-TSS (NM_001358566)	-278.0	NM_001199246	80884.0	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	4.0	1.38	7.4	1.35	3.27	4.82	9.51	5.75	0.62
Merged-chr14-77832578-2	chr14	77832063	77833063	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 5 of 5)	RMER6B|LTR|ERVK	-33595.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	10.3	10.6	23.12	9.45	14.46	12.86	40.14	45.54	25.61
Merged-chr2-102820731-1	chr2	102820231	102821231	+	786.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-73971.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	6.86	5.07	21.27	6.07	7.46	16.08	9.51	17.24	25.61
Merged-chr15-63540441-2	chr15	63539955	63540955	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-60847.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	3.43	7.83	6.47	16.19	7.0	12.06	4.22	4.86	2.5
Merged-chr5-123369058-2	chr5	123368532	123369532	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029850, intron 4 of 5)	intron (NM_029850, intron 4 of 5)	24584.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	2.86	5.07	9.25	7.42	3.73	1.61	1.06	5.75	0.0
Merged-chr2-180025410-2	chr2	180024945	180025945	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177727, intron 1 of 8)	CpG	458.0	NM_177727	241846.0	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	21.17	11.98	36.07	31.71	12.6	33.76	33.8	11.94	17.49
Merged-chr16-57960035-1	chr16	57959535	57960535	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205298.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	1.14	0.46	1.85	2.7	2.8	4.82	0.0	3.1	5.0
Merged-chr1-131094082-3	chr1	131093597	131094597	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	3746.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	34.9	31.33	16.65	43.18	7.0	6.43	36.97	32.72	23.11
Merged-chr3-107994340-1	chr3	107993840	107994840	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7920.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	9.72	12.44	23.12	14.17	14.0	15.27	12.67	5.31	13.12
Merged-chr17-86484520-3	chr17	86484007	86485007	+	786.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 6 of 14)	intron (NM_011104, intron 6 of 14)	-197329.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.29	2.76	1.85	2.02	0.47	3.22	4.22	2.21	8.12
Merged-chr12-13563865-1	chr12	13563365	13564365	+	786.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	63781.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	4.0	9.22	9.25	6.07	10.26	19.29	4.22	3.98	7.49
Merged-chr5-107950823-3	chr5	107950321	107951321	+	786.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	36256.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	30.32	39.17	40.7	34.41	26.12	47.42	48.58	38.91	48.71
Merged-chr8-25226637-2	chr8	25226132	25227132	+	786.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25090.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	2.86	2.3	1.85	6.07	3.27	5.63	6.34	0.44	0.0
Merged-chr14-30655693-3	chr14	30655186	30656186	+	786.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177815, intron 1 of 12)	PB1D10|SINE|Alu	1311.0	NM_177815	328370.0	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	25.74	11.98	5.55	16.19	11.2	23.31	13.73	19.46	11.24
Merged-chr7-113594572-3	chr7	113594066	113595066	+	786.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29579.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	2.86	4.61	0.0	0.67	2.8	4.82	2.11	4.86	1.87
Merged-chr8-77485025-3	chr8	77484610	77485610	+	786.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-31946.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	9.72	6.91	1.85	12.14	7.0	6.43	9.51	9.29	9.99
Merged-chr13-45358436-2	chr13	45357947	45358947	+	786.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31295.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	11.44	8.75	5.55	9.45	12.6	9.65	5.28	0.44	2.5
Merged-chr13-107094765-2	chr13	107094263	107095263	+	786.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72193.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	5.72	3.23	1.85	1.35	4.67	2.41	4.22	5.75	2.5
Merged-chr9-59732972-3	chr9	59732463	59733463	+	786.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17686.0	NM_001172069	71599.0	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	201.36	257.58	138.74	274.61	210.86	222.65	249.26	253.36	120.53
Merged-chr13-69509761-3	chr13	69509262	69510262	+	786.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198600, intron 5 of 12)	B2_Mm2|SINE|B2	24102.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	6.29	3.69	0.92	5.4	2.8	3.22	5.28	0.44	4.37
Merged-chr4-137578414-3	chr4	137577921	137578921	+	786.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3241.0	NM_001033979	435811.0	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	6.86	2.3	7.4	2.02	0.93	1.61	2.11	4.42	6.87
Merged-chr3-116860557-2	chr3	116860048	116861048	+	786.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113478, intron 1 of 16)	intron (NM_001113478, intron 1 of 16)	981.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	25.74	18.89	9.25	29.69	17.26	26.53	79.21	72.07	29.35
Merged-chr9-14699163-2	chr9	14698666	14699666	+	786.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36144.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	3.43	1.84	0.0	2.02	0.47	0.0	4.22	3.54	0.0
Merged-chr2-50981272-2	chr2	50980724	50981724	+	786.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71540.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.86	6.45	3.7	12.82	8.4	7.23	2.11	3.54	3.75
Merged-chr14-98606001-1	chr14	98605501	98606501	+	786.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-436236.0	NM_007826	13134.0	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	1.14	1.84	1.85	2.7	2.8	9.65	0.0	0.88	3.12
Merged-chr7-27545859-1	chr7	27545359	27546359	+	786.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011116, intron 1 of 13)	RMER19B|LTR|ERVK	7359.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	25.17	29.95	37.92	32.39	41.05	26.53	25.35	28.3	38.72
Merged-chr7-80777283-1	chr7	80776783	80777783	+	786.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	26048.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	27.46	41.01	37.0	35.76	28.46	33.76	79.21	85.34	50.59
Merged-chr6-125426043-3	chr6	125425553	125426553	+	786.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45549.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	38.33	30.87	13.87	47.9	25.19	28.13	65.48	49.96	26.23
Merged-chr13-42820160-2	chr13	42819677	42820677	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-46070.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	17.73	15.67	21.27	16.87	7.0	9.65	9.51	20.78	13.74
Merged-chr3-65820070-2	chr3	65819568	65820568	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001166659, exon 12 of 13)	exon (NM_001166659, exon 12 of 13)	138181.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	3.43	6.91	12.95	16.87	7.46	11.25	12.67	7.07	12.49
Merged-chr11-104003678-2	chr11	104003179	104004179	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	36808.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	42.33	50.23	46.25	68.15	66.24	57.87	59.15	54.39	33.1
Merged-chr5-99293966-2	chr5	99293469	99294469	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41042.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	22.88	13.36	17.57	16.19	9.33	21.7	7.39	5.75	3.75
Merged-chr7-65500962-2	chr7	65500522	65501522	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81009.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	2.86	3.69	0.0	2.7	1.87	2.41	2.11	1.33	0.0
Merged-chr13-119325725-2	chr13	119325213	119326213	+	786.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83298.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	4.58	9.68	1.85	7.42	4.67	6.43	25.35	14.15	6.87
Merged-chr16-36795096-2	chr16	36794579	36795579	+	786.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134111, intron 5 of 5)	intron (NM_134111, intron 5 of 5)	-10117.0	NM_021301	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	14.3	7.37	7.4	12.14	5.6	5.63	3.17	3.98	2.5
Merged-chr9-57644012-3	chr9	57643526	57644526	+	786.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	1627.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	36.61	28.57	61.97	43.18	30.32	66.71	85.55	48.2	53.71
Merged-chr12-104190504-3	chr12	104190006	104191006	+	786.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23948.0	NM_009251	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	11.44	8.75	12.95	3.37	7.0	6.43	6.34	4.42	9.37
Merged-chr1-161999550-2	chr1	161999060	162000060	+	786.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038619, intron 20 of 20)	intron (NM_001038619, intron 20 of 20)	-5409.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	49.2	51.61	13.87	84.34	76.51	80.38	59.15	57.48	33.1
Merged-chr9-116096901-1	chr9	116096401	116097401	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	78462.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	20.02	22.58	24.97	20.92	16.79	26.53	22.18	10.17	19.98
Merged-chr16-89774528-1	chr16	89774028	89775028	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43824.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.29	5.99	0.0	6.75	7.46	4.82	2.11	3.54	1.25
Merged-chr9-70651111-1	chr9	70650611	70651611	+	786.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172772, intron 1 of 8)	RMER5|LTR|ERV1	6063.0	NM_172772	235461.0	Mm.170855	NM_172772	ENSMUSG00000042444	Mindy2	AI465301|B230380D07Rik|Fam63b|mKIAA1164	MINDY lysine 48 deubiquitinase 2	protein-coding	73.22	71.42	54.57	99.18	101.7	66.71	109.84	114.96	54.33
Merged-chr1-181950909-3	chr1	181950409	181951409	+	786.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010135, intron 3 of 14)	intron (NM_010135, intron 3 of 14)	69071.0	NM_010135	13800.0	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	ENAH actin regulator	protein-coding	49.2	47.0	35.15	8.77	8.4	11.25	14.79	24.76	9.99
Merged-chr10-127618638-4	chr10	127618071	127619071	+	786.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	2577.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	77.23	77.41	81.4	101.21	87.7	156.74	136.25	118.94	89.93
Merged-chr8-84686218-3	chr8	84685753	84686753	+	786.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	1609.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	49.2	33.18	59.2	32.39	34.52	54.66	25.35	22.99	25.61
Merged-chr12-41349578-3	chr12	41349083	41350083	+	786.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	L1MA9|LINE|L1	136474.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	51.48	56.68	38.85	41.16	50.38	32.96	42.25	53.5	42.47
Merged-chr14-57395093-2	chr14	57394593	57395593	+	786.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	3390.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	8.01	14.28	7.4	11.47	7.0	8.84	10.56	8.4	13.12
Merged-chr18-69544047-2	chr18	69543550	69544550	+	786.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	197890.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	17.73	8.75	9.25	14.84	15.86	5.63	9.51	8.84	9.99
Merged-chr13-81041836-3	chr13	81041338	81042338	+	786.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	ORR1E|LTR|ERVL-MaLR	77764.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.72	2.3	5.55	5.4	7.93	1.61	4.22	4.86	2.5
Merged-chr5-67532544-3	chr5	67532048	67533048	+	786.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68650.0	NR_015582	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	2.29	2.76	2.77	4.72	1.4	4.02	1.06	0.0	2.5
Merged-chr11-83063352-2	chr11	83062882	83063882	+	786.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1730.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	83.52	70.96	100.82	74.22	52.25	73.14	66.54	66.77	54.96
Merged-chr10-75951807-2	chr10	75951313	75952313	+	786.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2701.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	4.0	2.76	1.85	5.4	2.8	0.0	6.34	1.77	3.75
Merged-chr19-7268190-3	chr19	7267647	7268647	+	786.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001320554)	promoter-TSS (NM_001320554)	-132.0	NM_001320554	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	14.3	5.53	2.77	6.75	2.8	6.43	7.39	1.33	0.0
Merged-chr18-69592581-3	chr18	69592094	69593094	+	786.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	246434.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	41.19	60.36	35.15	53.98	52.72	61.09	61.26	89.76	33.1
Merged-chr15-75923459-3	chr15	75922963	75923963	+	786.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1903.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	17.73	17.97	34.22	18.89	7.93	23.31	12.67	4.86	13.12
Merged-chr4-152131420-4	chr4	152130907	152131907	+	786.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207688, intron 3 of 10)	CpG-10714	-2482.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	5.72	0.92	3.7	2.02	4.67	2.41	5.28	2.21	7.49
Merged-chr17-28518195-3	chr17	28517697	28518697	+	786.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12664.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	20.59	17.51	30.52	47.23	55.51	37.78	8.45	13.71	45.59
Merged-chr10-67689782-2	chr10	67689303	67690303	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117844.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	98.39	70.5	26.82	101.21	58.78	54.66	30.63	34.49	18.11
Merged-chr19-58118983-1	chr19	58118483	58119483	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	67816.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	2.29	2.3	11.1	4.72	4.67	12.06	7.39	5.75	2.5
Merged-chr4-89353901-2	chr4	89353412	89354412	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-42880.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	4.0	15.67	4.62	10.8	12.13	6.43	5.28	11.05	11.24
Merged-chr11-86583940-1	chr11	86583440	86584440	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_029738)	TTS (NR_029738)	218.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	262.0	325.77	158.17	217.26	301.36	157.54	286.23	345.77	196.1
Merged-chr1-120100743-1	chr1	120100243	120101243	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20176.0	NM_001037999	13167.0	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	5.72	1.84	0.0	10.12	4.67	1.61	6.34	4.86	9.37
Merged-chr10-40139902-2	chr10	40139430	40140430	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	2324.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	61.78	77.87	44.4	62.07	59.25	55.46	73.93	83.57	69.95
Merged-chr1-17607334-1	chr1	17606834	17607834	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053191, intron 2 of 5)	intron (NM_053191, intron 2 of 5)	5433.0	NM_053191	94227.0	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	6.86	5.53	0.0	4.72	8.86	14.47	4.22	6.19	6.87
Merged-chr10-84087742-3	chr10	84087229	84088229	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152790, intron 1 of 4)	intron (NR_152790, intron 1 of 4)	12968.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	8.01	5.53	9.25	8.77	8.4	7.23	9.51	10.61	16.24
Merged-chr2-158028715-1	chr2	158028215	158029215	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029282)	promoter-TSS (NM_029282)	218.0	NM_001291135	70470.0	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	248.27	255.74	217.36	201.74	203.86	237.12	256.65	233.91	135.52
Merged-chr12-111599654-2	chr12	111599153	111600153	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 2 of 16)	intron (NM_021516, intron 2 of 16)	25143.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	9.15	6.91	19.42	12.82	4.2	13.66	32.74	26.53	23.73
Merged-chr13-65242485-1	chr13	65241985	65242985	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-36369.0	NM_178364	170936.0	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	18.31	6.45	5.55	10.12	5.6	8.84	62.31	31.84	9.37
Merged-chr12-86166412-2	chr12	86165915	86166915	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2926.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	11.44	5.07	9.25	6.07	7.0	12.86	8.45	1.77	2.5
Merged-chr11-26210588-1	chr11	26210088	26211088	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027973)	promoter-TSS (NR_027973)	-12.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	69.79	45.16	59.2	67.47	45.25	34.56	58.09	26.53	33.1
Merged-chr2-45054680-1	chr2	45054180	45055180	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-31503.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	30.89	35.48	49.02	28.34	32.19	57.07	27.46	31.84	23.11
Merged-chr8-88646376-1	chr8	88645876	88646876	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145857)	promoter-TSS (NM_145857)	-971.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	10.3	6.91	11.1	25.64	30.79	32.96	2.11	2.65	3.75
Merged-chr4-88458867-2	chr4	88458366	88459366	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-19940.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	14.3	9.22	17.57	6.75	8.86	15.27	17.96	11.5	20.61
Merged-chr7-45405221-3	chr7	45404732	45405732	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010596)	promoter-TSS (NM_010596)	-728.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	6.29	2.76	7.4	7.42	1.4	1.61	2.11	3.1	3.75
Merged-chr11-72550348-1	chr11	72549848	72550848	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029932)	promoter-TSS (NM_029932)	-102.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	4.58	4.15	7.4	6.07	3.27	4.82	3.17	0.88	5.0
Merged-chr10-7269360-1	chr10	7268860	7269860	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57123.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	4.58	1.38	5.55	3.37	4.2	2.41	1.06	5.75	5.62
Merged-chr14-54939542-1	chr14	54939042	54940042	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026066)	TTS (NM_026066)	3045.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	1.14	2.3	3.7	2.02	0.47	1.61	0.0	0.88	2.5
Merged-chr15-50802415-1	chr15	50801915	50802915	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	86634.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.44	6.91	0.92	8.1	7.0	12.06	6.34	4.42	5.0
Merged-chr4-97662987-1	chr4	97662487	97663487	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-78396.0	NR_015513	319865.0	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	5.72	5.53	0.0	2.7	4.67	8.04	4.22	1.77	8.12
Merged-chr2-68782589-2	chr2	68782155	68783155	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78786.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	9.72	19.81	11.1	18.89	18.19	24.11	26.4	14.59	16.24
Merged-chr4-138013027-1	chr4	138012527	138013527	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	15202.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	55.49	43.31	34.22	59.38	45.25	37.78	4.22	2.65	5.62
Merged-chr8-73356164-1	chr8	73355664	73356664	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2624.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.58	3.69	1.85	3.37	1.4	0.8	4.22	2.65	3.12
Merged-chr2-144294445-1	chr2	144293945	144294945	+	786.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	23541.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	10.3	8.75	21.27	11.47	6.06	17.68	16.9	17.24	17.49
Merged-chr6-100480648-1	chr6	100480148	100481148	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-46752.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	9.72	3.23	7.4	1.35	1.4	3.22	3.17	2.21	0.0
Merged-chr15-90618089-1	chr15	90617589	90618589	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357979, intron 4 of 18)	intron (NM_001357979, intron 4 of 18)	61299.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	4.0	6.45	0.0	7.42	5.13	4.02	3.17	2.21	7.49
Merged-chr11-12559397-1	chr11	12558897	12559897	+	786.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94437.0	NM_001282993	12808.0	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	9.15	4.15	0.0	1.35	3.73	4.82	2.11	1.77	3.75
Merged-chr15-76783786-3	chr15	76783296	76784296	+	786.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	34374.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	46.34	43.31	36.07	41.16	34.06	29.74	21.12	15.03	31.85
Merged-chr6-113622316-3	chr6	113621830	113622830	+	785.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1691.0	NM_009507	22346.0	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	15.45	12.44	6.47	12.82	6.06	12.86	20.07	15.48	14.99
Merged-chr12-116620080-3	chr12	116619570	116620570	+	785.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	134350.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	1.14	1.38	1.85	2.7	1.4	1.61	5.28	0.44	3.75
Merged-chr17-70728945-3	chr17	70728493	70729493	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	(CA)n|Simple_repeat|Simple_repeat	117784.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	13.73	10.14	0.0	14.84	12.13	11.25	8.45	6.63	6.25
Merged-chr6-39415973-3	chr6	39415470	39416470	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018810, intron 1 of 7)	B3|SINE|B2	3806.0	NM_001311109	54484.0	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	15.45	17.97	15.72	10.12	7.0	8.84	9.51	9.29	12.49
Merged-chr3-142559901-3	chr3	142559397	142560397	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018734)	promoter-TSS (NM_018734)	-147.0	NM_001289492	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	105.83	123.03	75.85	95.14	64.84	94.04	110.9	126.46	101.8
Merged-chr3-105020517-3	chr3	105019994	105020994	+	785.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 3 of 5)	intron (NM_030249, intron 3 of 5)	32459.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	76.66	111.51	70.3	114.03	96.57	92.44	80.27	91.53	79.32
Merged-chr8-79362588-3	chr8	79362082	79363082	+	785.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 2 of 6)	L2c|LINE|L2	36886.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	12.59	11.98	4.62	8.77	11.2	11.25	9.51	13.27	11.87
Merged-chr17-33998843-2	chr17	33998339	33999339	+	785.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	1494.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	36.61	30.41	23.12	19.57	6.06	16.08	35.91	28.3	31.23
Merged-chr11-32300747-3	chr11	32300242	32301242	+	785.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175000, exon 3 of 3)	exon (NM_175000, exon 3 of 3)	673.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	2.86	2.3	1.85	2.02	0.0	0.0	3.17	0.44	2.5
Merged-chr9-45408536-2	chr9	45408027	45409027	+	785.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_052823, intron 3 of 5)	intron (NM_052823, intron 3 of 5)	2450.0	NM_007503	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	5.15	9.22	1.85	6.07	9.33	9.65	5.28	6.19	2.5
Merged-chr14-32192586-2	chr14	32192085	32193085	+	785.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016897, intron 4 of 6)	intron (NM_016897, intron 4 of 6)	9306.0	NM_016897	53600.0	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	7.44	13.36	10.17	12.14	7.0	17.68	12.67	19.9	12.49
Merged-chr7-80864986-3	chr7	80864470	80865470	+	785.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009553, intron 2 of 2)	intron (NM_009553, intron 2 of 2)	2862.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	6.29	5.99	17.57	10.12	4.67	13.66	4.22	6.19	13.12
Merged-chr1-171183667-1	chr1	171183167	171184167	+	785.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025557, intron 1 of 2)	intron (NM_025557, intron 1 of 2)	12601.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	8.58	5.07	2.77	16.19	11.2	3.22	28.52	15.03	4.37
Merged-chr13-47216481-2	chr13	47215973	47216973	+	785.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	22470.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	39.47	52.99	41.62	52.63	45.72	63.5	41.19	26.53	38.1
Merged-chr12-111433197-3	chr12	111432682	111433682	+	785.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9479.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	52.06	58.98	49.02	64.77	41.52	49.83	67.6	41.56	54.33
Merged-chr19-11957570-1	chr19	11957070	11958070	+	785.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8274.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	4.58	6.45	7.4	0.67	2.33	2.41	30.63	38.47	13.12
Merged-chr1-31034135-3	chr1	31033627	31034627	+	785.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136907, intron 2 of 3)	intron (NR_136907, intron 2 of 3)	62327.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	10.87	11.52	9.25	1.35	4.67	8.04	11.62	5.31	8.12
Merged-chr11-70670109-3	chr11	70669579	70670579	+	785.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172561)	promoter-TSS (NM_172561)	-663.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	33.75	29.49	34.22	37.11	22.86	47.42	31.69	27.41	36.22
Merged-chr19-5232823-3	chr19	5232315	5233315	+	785.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 1 of 23)	intron (NM_153129, intron 1 of 23)	40304.0	NM_153129	107975.0	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	15.45	13.82	12.95	18.22	8.86	20.09	24.29	19.01	31.23
Merged-chr12-91746610-2	chr12	91746107	91747107	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	MTC|LTR|ERVL-MaLR	39829.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	12.01	4.15	6.47	24.29	8.4	27.33	20.07	6.19	6.87
Merged-chr5-8312498-2	chr5	8311992	8312992	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 3 of 28)	MIRc|SINE|MIR	55668.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	8.01	4.61	5.55	8.77	13.06	30.54	3.17	1.77	4.37
Merged-chr7-75612151-2	chr7	75611688	75612688	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 7 of 36)	intron (NM_029332, intron 7 of 36)	156654.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	21.17	36.4	17.57	33.06	17.73	3.22	4.22	3.54	5.0
Merged-chr2-164823416-2	chr2	164822912	164823912	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	726.0	NM_028028	71971.0	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	66.36	64.51	66.6	60.05	44.32	72.34	52.81	70.3	38.1
Merged-chr2-16220846-1	chr2	16220346	16221346	+	785.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 37 of 38)	AT_rich|Low_complexity|Low_complexity	-135458.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	8.01	1.84	9.25	2.02	4.2	3.22	2.11	7.52	5.0
Merged-chr16-22444559-2	chr16	22444082	22445082	+	785.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-5012.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	133.86	128.56	124.87	126.85	72.31	92.44	155.26	149.45	93.68
Merged-chr14-76415663-5	chr14	76415117	76416117	+	785.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207652)	promoter-TSS (NM_207652)	-204.0	NM_207652	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	52.63	17.51	44.4	60.72	39.65	50.64	47.53	23.88	11.87
Merged-chr9-83806231-3	chr9	83805719	83806719	+	785.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148941)	promoter-TSS (NM_148941)	86.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	1.72	0.46	2.77	6.75	4.67	1.61	2.11	1.33	1.25
Merged-chr10-99088436-3	chr10	99087941	99088941	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18641.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	10.3	2.76	12.95	7.42	8.4	4.82	11.62	3.98	14.99
Merged-chr15-99105529-3	chr15	99104986	99105986	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176835)	TTS (NM_176835)	6002.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	2.86	8.29	0.0	5.4	3.73	6.43	3.17	2.21	5.0
Merged-chr11-109353352-1	chr11	109352852	109353852	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027883, intron 1 of 1)	intron (NR_027883, intron 1 of 1)	6485.0	NR_027883	67927.0	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	22.31	15.67	13.87	4.05	7.93	6.43	5.28	3.1	5.0
Merged-chr10-127746055-3	chr10	127745545	127746545	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5753.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	21.17	20.74	29.6	22.94	18.19	17.68	53.87	39.8	30.6
Merged-chr6-115343243-3	chr6	115342666	115343666	+	785.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-17785.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	45.76	45.62	57.35	62.75	47.12	77.97	59.15	53.5	41.84
Merged-chr2-80176573-2	chr2	80176070	80177070	+	785.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46912.0	NM_001355140	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	4.0	2.3	1.85	4.05	4.67	3.22	6.34	0.0	7.49
Merged-chr19-5848338-3	chr19	5847837	5848837	+	785.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2857.0	NR_003513	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	196.79	246.06	147.99	172.05	191.27	189.69	161.6	183.94	154.26
Merged-chr6-145307987-2	chr6	145307501	145308501	+	785.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	57449.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	100.11	92.62	50.87	97.16	84.9	67.52	99.28	98.6	59.95
Merged-chr13-56758639-3	chr13	56758144	56759144	+	785.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54976.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	7.44	4.61	3.7	0.67	1.87	6.43	2.11	1.33	2.5
Merged-chr18-69402199-2	chr18	69401707	69402707	+	785.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	56047.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.72	4.15	1.85	9.45	6.06	1.61	17.96	10.61	6.25
Merged-chr1-155564991-3	chr1	155564483	155565483	+	785.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026683, intron 2 of 3)	intron (NM_026683, intron 2 of 3)	6863.0	NM_028250	72482.0	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	3.43	1.84	7.4	5.4	1.4	6.43	2.11	1.33	3.75
Merged-chr18-54963319-2	chr18	54962837	54963837	+	785.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	26843.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	28.6	38.71	24.97	31.04	28.92	50.64	21.12	14.15	22.48
Merged-chr9-45388809-2	chr9	45388315	45389315	+	785.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-10894.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	4.58	5.53	0.0	5.4	1.87	4.82	4.22	3.98	0.0
Merged-chr15-78300975-2	chr15	78300477	78301477	+	785.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287389, intron 1 of 11)	B4|SINE|B4	4744.0	NM_007781	12984.0	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	24.03	27.19	21.27	33.06	16.79	26.53	9.51	6.19	2.5
Merged-chr11-82747214-2	chr11	82746711	82747711	+	785.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009839, intron 5 of 13)	intron (NM_009839, intron 5 of 13)	17110.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	104.11	174.64	79.55	122.12	150.22	145.49	135.19	130.88	102.42
Merged-chr13-28482053-3	chr13	28481559	28482559	+	785.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	228814.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	15.45	5.53	12.95	20.24	12.13	4.82	6.34	1.77	3.75
Merged-chr3-8245373-3	chr3	8244889	8245889	+	785.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	217709.0	NR_033512	620966.0	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	13.73	26.26	7.4	11.47	20.53	1.61	19.01	11.94	7.49
Merged-chr8-57653498-4	chr8	57652981	57653981	+	785.50415	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144731)	promoter-TSS (NM_144731)	-426.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	34.32	16.59	23.12	32.39	15.39	24.11	48.58	46.87	26.23
Merged-chr6-90569873-2	chr6	90569379	90570379	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027406, exon 10 of 23)	exon (NM_027406, exon 10 of 23)	19086.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	5.15	4.15	0.0	7.42	3.27	4.02	4.22	5.31	1.25
Merged-chr11-54146280-1	chr11	54145780	54146780	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45356.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	11.44	3.23	3.7	5.4	2.33	2.41	4.22	2.21	4.37
Merged-chr2-164787210-2	chr2	164786706	164787706	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133924, intron 2 of 2)	MIR|SINE|MIR	1185.0	NM_133924	101113.0	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	17.73	20.27	11.1	31.71	14.93	25.72	28.52	19.01	18.74
Merged-chr18-4254874-1	chr18	4254374	4255374	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89042.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	16.59	6.45	12.02	10.8	4.67	8.04	6.34	8.4	6.25
Merged-chr13-18810187-3	chr13	18809693	18810693	+	785.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	92901.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	17.16	3.69	3.7	4.72	10.73	6.43	5.28	5.75	3.75
Merged-chr3-21468187-2	chr3	21467655	21468655	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-608497.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.0	1.84	0.0	6.75	3.73	9.65	4.22	1.77	1.87
Merged-chr3-33956377-2	chr3	33955839	33956839	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63740.0	NM_008053	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	1.14	0.92	0.0	1.35	1.87	1.61	1.06	0.88	1.25
Merged-chr8-70554023-1	chr8	70553523	70554523	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	14348.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	8.58	7.37	5.55	21.59	17.26	3.22	4.22	2.21	5.62
Merged-chr8-91312504-2	chr8	91311999	91312999	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173431, intron 1 of 25)	intron (NM_173431, intron 1 of 25)	723.0	NM_173431	244585.0	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	20.02	12.44	14.8	5.4	2.8	1.61	15.84	19.01	3.12
Merged-chr2-127142307-1	chr2	127141807	127142807	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355634, intron 1 of 2)	intron (NM_001355634, intron 1 of 2)	283.0	NM_001163528	73338.0	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	14.3	20.74	29.6	23.62	20.53	35.37	15.84	12.82	23.73
Merged-chr15-66932538-1	chr15	66932038	66933038	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008681, intron 15 of 15)	intron (NM_008681, intron 15 of 15)	37103.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	4.0	7.83	0.0	2.7	2.33	4.82	5.28	0.0	6.25
Merged-chr4-40815340-3	chr4	40814841	40815841	+	785.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	34797.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	18.31	25.34	19.42	18.22	17.26	19.29	23.24	26.97	14.99
Merged-chr9-95574090-2	chr9	95573584	95574584	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14267.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	197.36	149.29	175.74	194.32	109.63	166.38	197.51	205.61	109.92
Merged-chr9-59547266-2	chr9	59546788	59547788	+	785.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	7748.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	40.04	62.67	78.62	39.13	49.92	75.56	63.37	61.46	47.46
Merged-chr6-84587730-3	chr6	84587199	84588199	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177713, intron 2 of 6)	CpG	6111.0	NM_175475	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	6.86	5.53	5.55	10.12	5.6	1.61	5.28	2.65	1.25
Merged-chr1-64318607-3	chr1	64318109	64319109	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-197220.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	33.18	31.79	11.1	43.18	35.92	32.96	22.18	20.34	9.37
Merged-chr13-37332873-3	chr13	37332368	37333368	+	785.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12477.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	57.21	52.07	49.95	56.68	38.72	62.7	59.15	53.5	54.96
Merged-chr14-25394836-3	chr14	25394383	25395383	+	785.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64302.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	8.01	7.83	8.32	13.49	3.73	9.65	4.22	6.63	2.5
Merged-chr3-135421216-2	chr3	135420723	135421723	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025902, intron 1 of 2)	ID_B1|SINE|B4	2210.0	NM_025902	67006.0	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	149.31	169.11	101.74	157.21	137.15	119.76	214.41	276.8	99.3
Merged-chr1-131933681-2	chr1	131933180	131934180	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	23222.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	13.73	21.2	15.72	14.84	10.26	16.08	28.52	25.65	22.48
Merged-chr9-22226502-2	chr9	22226012	22227012	+	785.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	intron (NR_028420, intron 1 of 4)	800.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	58.35	65.43	39.77	50.6	48.05	32.15	89.78	107.0	53.08
Merged-chr14-56486670-3	chr14	56486180	56487180	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033043, intron 24 of 36)	intron (NM_001033043, intron 24 of 36)	83983.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	12.59	7.83	5.55	16.19	7.93	4.82	7.39	5.75	1.25
Merged-chr10-125270448-3	chr10	125269942	125270942	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	38374.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	43.48	52.07	29.6	56.0	55.51	64.3	48.58	52.18	24.36
Merged-chr5-122394105-3	chr5	122393599	122394599	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019824, intron 1 of 6)	B3A|SINE|B2	2221.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	10.3	17.05	12.02	15.52	11.2	21.7	7.39	11.5	20.61
Merged-chr6-115987557-1	chr6	115987057	115988057	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	7448.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	9.72	5.07	1.85	4.72	1.87	3.22	5.28	1.33	3.75
Merged-chr10-67538785-3	chr10	67538262	67539262	+	785.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347458, intron 2 of 2)	CpG	832.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	27.46	9.68	14.8	22.27	4.2	14.47	10.56	8.4	7.49
Merged-chr11-97343798-2	chr11	97343296	97344296	+	785.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081220, exon 7 of 11)	exon (NM_001081220, exon 7 of 11)	8277.0	NM_001081220	217143.0	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	4.58	0.92	4.62	12.14	4.2	9.65	9.51	1.33	5.0
Merged-chr3-154510412-3	chr3	154509946	154510946	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86265.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	4.58	7.83	3.7	5.4	5.13	1.61	4.22	6.63	11.24
Merged-chr7-19927023-3	chr7	19926525	19927525	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5882.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	2.86	2.76	0.0	4.72	4.67	4.82	6.34	3.1	5.0
Merged-chr17-28756611-3	chr17	28756108	28757108	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12709.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	37.76	32.25	18.5	53.3	31.72	20.9	26.4	23.88	23.11
Merged-chr16-55892580-3	chr16	55892062	55893062	+	785.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 1 of 5)	intron (NM_001134457, intron 1 of 5)	2717.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	4.0	4.15	3.7	3.37	2.8	6.43	3.17	3.98	2.5
Merged-chr19-55642089-3	chr19	55641589	55642589	+	785.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045318, exon 4 of 4)	non-coding (NR_045318, exon 4 of 4)	60115.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	45.76	44.7	36.07	50.6	32.19	61.09	44.36	56.16	28.1
Merged-chr2-60289637-2	chr2	60289134	60290134	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5150.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	35.47	35.48	67.52	34.41	26.59	53.05	27.46	25.65	37.47
Merged-chr8-119782905-3	chr8	119782398	119783398	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4482.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	10.87	3.23	7.4	8.1	4.67	7.23	5.28	2.21	3.75
Merged-chr7-24975426-3	chr7	24974904	24975904	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2676.0	NM_010261	14470.0	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.57	3.23	9.25	8.1	5.6	6.43	1.06	1.77	0.0
Merged-chr6-5390361-2	chr6	5389878	5390878	+	785.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355662)	promoter-TSS (NM_001355662)	-32.0	NM_001355662	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	7.44	9.22	9.25	22.27	11.66	5.63	10.56	9.29	6.25
Merged-chr18-67606281-3	chr18	67605799	67606799	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35056.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	23.45	23.96	11.1	19.57	15.86	20.9	25.35	19.9	14.99
Merged-chr4-45848268-3	chr4	45847777	45848777	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028788)	promoter-TSS (NM_028788)	-539.0	NM_001305421	74152.0	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	9.15	2.76	8.32	9.45	7.0	4.82	3.17	2.21	3.12
Merged-chr2-168904357-3	chr2	168903853	168904853	+	785.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51234.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	5.72	2.76	0.0	4.72	1.4	4.02	4.22	2.21	7.49
Merged-chr1-9593930-3	chr1	9593428	9594428	+	785.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015470, intron 3 of 4)	intron (NR_015470, intron 3 of 4)	-7339.0	NM_178399	76982.0	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	13.16	20.74	20.35	21.59	24.26	20.9	19.01	25.2	13.74
Merged-chr6-116694191-3	chr6	116693679	116694679	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178768, exon 5 of 5)	3' UTR (NM_178768, exon 5 of 5)	-20343.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	43.48	50.69	20.35	41.16	28.92	38.58	70.76	58.81	39.35
Merged-chr4-135890032-3	chr4	135889523	135890523	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5166.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	5.72	6.91	6.47	5.4	2.8	4.82	5.28	2.21	0.62
Merged-chrX-78583846-3	chrX	78583310	78584310	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164275)	promoter-TSS (NM_001164275)	-5.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	5.15	2.3	1.85	1.35	3.73	1.61	1.06	0.44	1.87
Merged-chr7-104296865-1	chr7	104296365	104297365	+	785.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8759.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	2.29	0.46	0.0	0.0	2.33	0.0	31.69	36.26	30.6
Merged-chr6-121215189-3	chr6	121214682	121215682	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017379, intron 1 of 4)	intron (NM_017379, intron 1 of 4)	4448.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	4.58	1.84	1.85	3.37	3.73	8.04	4.22	2.65	1.25
Merged-chr8-111745788-3	chr8	111745254	111746254	+	785.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_009954	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	6.29	2.76	3.7	4.05	2.33	1.61	5.28	0.88	0.0
Merged-chr1-13427020-3	chr1	13426524	13427524	+	785.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-52941.0	NM_008678	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	37.76	47.92	35.15	40.48	35.92	35.37	65.48	49.96	47.46
Merged-chr3-96577442-3	chr3	96576940	96577940	+	785.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001293701)	TTS (NM_001293701)	-10639.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	293.46	251.59	148.92	282.03	192.2	220.24	234.47	329.86	148.01
Merged-chr9-104039160-2	chr9	104038653	104039653	+	785.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028721, intron 23 of 26)	intron (NM_028721, intron 23 of 26)	23968.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	72.65	99.99	54.57	68.15	71.38	60.28	80.27	66.33	43.72
Merged-chr6-100286703-3	chr6	100286199	100287199	+	785.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019743, intron 1 of 4)	CpG	659.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	65.21	61.28	52.72	73.54	75.11	41.8	80.27	45.99	44.34
Merged-chr18-68299336-2	chr18	68298836	68299836	+	785.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153794, intron 1 of 3)	intron (NM_153794, intron 1 of 3)	997.0	NM_153794	108654.0	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	107.55	143.3	61.05	153.84	141.82	115.75	236.59	229.04	96.18
Merged-chr11-97557148-3	chr11	97556637	97557637	+	785.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	17989.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	10.3	9.68	27.75	14.17	1.87	12.86	12.67	9.73	12.49
Merged-chr2-36276781-3	chr2	36276271	36277271	+	785.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46345.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	9.15	6.45	5.55	11.47	3.73	4.02	10.56	5.75	7.49
Merged-chr3-152149487-3	chr3	152148986	152149986	+	785.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	16414.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	10.3	7.83	14.8	14.17	9.33	12.86	5.28	5.31	3.75
Merged-chr11-46811587-3	chr11	46810979	46811979	+	785.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	PB1D10|SINE|Alu	680.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	239.69	294.9	182.22	283.38	262.64	235.51	410.86	447.03	204.85
Merged-chr11-14449375-1	chr11	14448875	14449875	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	149850.0	NR_045918	73307.0	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	1.72	3.69	4.62	0.67	2.33	0.0	23.24	21.67	8.12
Merged-chr4-153878170-2	chr4	153877655	153878655	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	72321.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	26.89	46.08	11.1	46.56	63.45	49.03	19.01	36.7	9.37
Merged-chr5-102640801-1	chr5	102640301	102641301	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128009.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	4.58	6.45	0.92	4.05	2.8	3.22	3.17	3.1	4.37
Merged-chr17-5625754-1	chr17	5625254	5626254	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	133154.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	56.06	65.89	49.02	87.71	77.91	54.66	65.48	74.73	47.46
Merged-chr1-16703071-1	chr1	16702571	16703571	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159711, intron 3 of 4)	intron (NM_001159711, intron 3 of 4)	14615.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	4.0	4.61	9.25	4.05	3.27	8.04	13.73	7.07	7.49
Merged-chr10-121484355-1	chr10	121483855	121484855	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8105.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	20.02	15.21	15.72	33.06	15.39	27.33	9.51	8.4	14.99
Merged-chr2-113444006-1	chr2	113443506	113444506	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 1 of 16)	intron (NM_001285459, intron 1 of 16)	2942.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	23.45	28.57	20.35	22.27	18.66	33.76	19.01	21.67	13.12
Merged-chr5-134617337-1	chr5	134616837	134617837	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2312.0	NM_020044	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	6.86	3.23	12.95	4.72	0.93	2.41	4.22	2.21	1.87
Merged-chr1-9848251-1	chr1	9847751	9848751	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037759)	promoter-TSS (NM_001037759)	-30.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	4.58	2.76	5.55	6.75	3.27	4.82	7.39	4.86	9.37
Merged-chr5-115157755-1	chr5	115157255	115158255	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175403, intron 1 of 4)	CpG	421.0	NM_175403	109154.0	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	226.53	168.19	101.74	246.95	180.07	131.02	196.45	171.12	94.3
Merged-chrX-13600142-3	chrX	13599642	13600642	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284503, intron 10 of 26)	intron (NM_001284503, intron 10 of 26)	-32627.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	26.89	24.42	13.87	29.69	18.19	24.11	20.07	15.48	9.99
Merged-chr6-97155748-2	chr6	97155269	97156269	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081111, intron 16 of 16)	B1_Mus1|SINE|Alu	-6886.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	20.59	28.57	14.8	12.14	13.06	40.99	25.35	18.13	18.11
Merged-chr17-26511500-1	chr17	26511000	26512000	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3028.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	10.87	2.76	3.7	11.47	6.06	5.63	14.79	1.33	3.75
Merged-chr1-161139684-3	chr1	161139178	161140178	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-3034.0	NM_028664	73844.0	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	3.43	2.3	3.7	6.07	1.87	0.0	7.39	4.42	1.25
Merged-chr18-7870752-1	chr18	7870252	7871252	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360956, intron 2 of 13)	PB1D7|SINE|Alu	1039.0	NM_001360956	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	41.76	38.25	27.75	35.09	31.72	28.94	25.35	39.35	16.86
Merged-chr9-65202097-1	chr9	65201597	65202597	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12593.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	113.27	167.73	76.77	161.93	147.88	85.2	154.2	179.96	49.96
Merged-chr17-12314254-1	chr17	12313754	12314754	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357722, intron 1 of 25)	intron (NM_001357722, intron 1 of 25)	4406.0	NM_011948	26407.0	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	2.29	3.23	2.77	18.89	12.6	9.65	40.14	38.47	22.48
Merged-chr8-11037620-1	chr8	11037120	11038120	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	intron (NR_046017, intron 1 of 4)	-29190.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	7.44	5.99	1.85	11.47	3.73	6.43	4.22	5.75	2.5
Merged-chr2-5507317-1	chr2	5506817	5507817	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	127927.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	18.31	32.72	7.4	26.31	28.46	14.47	6.34	17.24	2.5
Merged-chr3-136756262-3	chr3	136755762	136756762	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	86196.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	4.0	4.15	5.55	3.37	1.4	4.82	2.11	5.75	7.49
Merged-chr2-13270854-1	chr2	13270354	13271354	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009105, intron 2 of 8)	intron (NM_009105, intron 2 of 8)	561.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	33.18	20.74	25.9	33.06	22.86	33.76	32.74	40.68	18.74
Merged-chr8-36158231-1	chr8	36157731	36158731	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151736, intron 2 of 3)	intron (NR_151736, intron 2 of 3)	2221.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	13.16	5.99	3.7	10.12	11.66	7.23	2.11	5.31	1.25
Merged-chr19-55862704-1	chr19	55862204	55863204	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-32617.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.58	5.07	7.4	5.4	4.67	6.43	6.34	8.84	8.12
Merged-chr3-101596932-1	chr3	101596432	101597432	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144900, intron 1 of 22)	intron (NM_144900, intron 1 of 22)	7775.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	174.48	225.78	150.77	187.57	193.13	157.54	165.82	210.91	104.3
Merged-chr16-24628638-1	chr16	24628138	24629138	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-93217.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	233.97	244.22	110.07	269.89	239.32	97.26	182.72	249.82	86.81
Merged-chr19-55868150-3	chr19	55867655	55868655	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-27166.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.16	10.14	12.95	12.14	9.33	6.43	19.01	12.82	8.12
Merged-chr1-193839034-1	chr1	193838534	193839534	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-331504.0	NR_029592	387201.0		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	5.15	3.69	1.85	2.7	2.8	1.61	0.0	1.77	6.87
Merged-chr9-56258616-2	chr9	56258119	56259119	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-97549.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	132.72	155.28	99.89	128.87	155.35	95.65	271.44	279.01	115.54
Merged-chr3-30508741-1	chr3	30508241	30509241	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	CpG	934.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	2.29	0.0	1.85	0.67	0.93	1.61	0.0	0.0	1.25
Merged-chr1-151619478-1	chr1	151618978	151619978	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	48105.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	43.48	46.54	45.32	72.19	34.99	39.39	52.81	47.31	32.48
Merged-chr8-117074754-1	chr8	117074254	117075254	+	785.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029686, intron 4 of 42)	intron (NM_029686, intron 4 of 42)	7695.0	NM_029686	76645.0	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	4.58	2.76	0.92	4.05	1.4	5.63	4.22	1.77	2.5
Merged-chr3-95661039-1	chr3	95660539	95661539	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008562, exon 3 of 3)	3' UTR (NM_008562, exon 3 of 3)	2318.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	257.42	330.38	132.27	177.45	146.95	106.1	256.65	291.39	125.53
Merged-chr11-45944400-3	chr11	45943920	45944920	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290737)	TTS (NM_001290737)	515.0	NM_028185	72290.0	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	26.89	12.44	9.25	34.41	32.66	31.35	31.69	22.55	10.62
Merged-chr9-22229705-1	chr9	22229205	22230205	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	MERV1_LTR|LTR|ERV1	3993.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	11.44	16.59	31.45	12.82	10.26	12.06	25.35	22.55	27.48
Merged-chr7-19269121-1	chr7	19268621	19269621	+	785.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	MIR|SINE|MIR	2733.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	98.39	92.16	112.84	58.7	56.91	92.44	68.65	74.28	84.31
Merged-chr12-77239529-1	chr12	77239029	77240029	+	785.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	CpG	790.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	25.17	25.8	15.72	37.78	32.19	44.21	45.42	32.72	22.48
Merged-chr17-46347370-2	chr17	46346883	46347883	+	784.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-19360.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	15.45	13.82	31.45	10.12	8.86	18.49	20.07	18.57	18.11
Merged-chr3-9407198-3	chr3	9406710	9407710	+	784.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015499, intron 1 of 1)	intron (NR_015499, intron 1 of 1)	4132.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	3.43	5.07	5.55	9.45	9.8	8.04	5.28	15.92	16.24
Merged-chr14-30746469-2	chr14	30746020	30747020	+	784.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	30905.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	37.76	38.25	33.3	54.65	27.52	45.82	51.75	33.16	25.61
Merged-chr2-60285358-3	chr2	60284850	60285850	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290660)	promoter-TSS (NM_001290660)	-866.0	NM_001290660	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	84.09	124.41	67.52	62.07	41.52	69.93	72.88	69.86	71.82
Merged-chr3-139099480-3	chr3	139099003	139100003	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-24302.0	NM_001356388	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	10.87	9.68	0.0	6.75	5.6	8.04	5.28	3.98	14.99
Merged-chr6-31233455-3	chr6	31232951	31233951	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040260, intron 1 of 5)	L3|LINE|CR1	13100.0	NR_040259	73652.0	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	5.72	1.38	3.7	2.7	1.87	2.41	1.06	2.21	5.0
Merged-chr3-129532333-3	chr3	129531833	129532833	+	784.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_130450)	promoter-TSS (NM_130450)	-53.0	NM_130450	170439.0	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	10.3	4.15	4.62	15.52	9.33	15.27	2.11	6.63	5.62
Merged-chr9-57473510-4	chr9	57472995	57473995	+	784.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5435.0	NM_001301635	56807.0	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	36.04	45.16	33.3	45.21	38.72	78.77	27.46	30.95	51.21
Merged-chr3-104781704-3	chr3	104781166	104782166	+	784.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027982, intron 1 of 9)	CpG	610.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	3.43	5.53	4.62	8.77	5.6	3.22	5.28	3.98	11.24
Merged-chr18-38003412-2	chr18	38002905	38003905	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4436.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	8.58	11.06	4.62	10.12	7.93	8.04	13.73	8.4	16.24
Merged-chr5-105701583-2	chr5	105701052	105702052	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	742.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	132.14	130.4	59.2	191.62	177.27	106.1	146.81	148.57	60.58
Merged-chrX-48153480-2	chrX	48152985	48153985	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313749, intron 1 of 7)	intron (NM_001313749, intron 1 of 7)	7049.0	NM_028773	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	18.31	17.05	22.2	22.94	17.26	13.66	14.79	22.11	28.73
Merged-chr2-168478090-2	chr2	168477593	168478593	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001136073, exon 11 of 11)	3' UTR (NM_001136073, exon 11 of 11)	112272.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	7.44	8.75	1.85	8.1	4.2	4.02	4.22	1.77	1.25
Merged-chr5-62844648-2	chr5	62844158	62845158	+	784.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170705, intron 6 of 8)	intron (NM_001170705, intron 6 of 8)	30835.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	52.63	74.65	47.17	56.0	32.19	44.21	29.57	61.9	34.97
Merged-chr18-24208142-2	chr18	24207633	24208633	+	784.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	B1F1|SINE|Alu	2139.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	22.31	25.34	16.65	16.19	20.53	22.51	38.02	24.32	31.23
Merged-chr2-91921978-3	chr2	91921499	91922499	+	784.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-190.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	1.72	3.69	1.85	2.02	2.8	2.41	13.73	4.42	7.49
Merged-chr11-48823812-3	chr11	48823307	48824307	+	784.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2331.0	NM_053166	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	4.0	2.76	2.77	4.72	2.8	0.0	4.22	4.42	2.5
Merged-chr18-62176882-8	chr18	62176326	62177326	+	784.814575	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007420)	TTS (NM_007420)	3155.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	64.07	61.28	27.75	65.45	48.52	54.66	53.87	49.96	27.48
Merged-chr2-91441869-3	chr2	91441374	91442374	+	784.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 1 of 8)	intron (NM_175123, intron 1 of 8)	2840.0	NM_001311144	228356.0	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	7.44	7.83	9.25	10.12	7.0	9.65	9.51	11.05	9.99
Merged-chr9-64925934-3	chr9	64925423	64926423	+	784.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144813, intron 9 of 9)	intron (NM_144813, intron 9 of 9)	25684.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	8.58	4.61	5.55	8.77	2.8	4.82	1.06	7.52	1.87
Merged-chr19-55828022-2	chr19	55827503	55828503	+	784.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-67318.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	15.45	6.91	9.25	28.34	12.6	19.29	11.62	6.19	13.12
Merged-chr15-84853970-1	chr15	84853470	84854470	+	784.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	CpG	1129.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	4.58	3.23	15.72	10.12	4.67	1.61	15.84	15.03	13.74
Merged-chr7-19221566-2	chr7	19221055	19222055	+	784.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175668, exon 2 of 2)	5' UTR (NM_175668, exon 2 of 2)	-6834.0	NM_207525	403187.0	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	10.3	5.99	5.55	4.72	3.27	1.61	0.0	1.33	1.25
Merged-chr13-34233144-1	chr13	34232644	34233644	+	784.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	70180.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	16.02	3.23	3.7	7.42	6.53	8.84	7.39	4.86	5.62
Merged-chr14-41006431-3	chr14	41005949	41006949	+	784.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316732, intron 1 of 6)	intron (NM_001316732, intron 1 of 6)	471.0	NM_001316739	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	4.0	1.84	3.7	2.02	4.2	0.8	5.28	2.21	1.25
Merged-chr13-55696191-1	chr13	55695691	55696691	+	784.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181278, intron 1 of 1)	B4A|SINE|B4	3067.0	NM_181278	78521.0	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	6.29	3.23	7.4	9.45	2.33	8.84	8.45	8.4	14.36
Merged-chr9-106886310-3	chr9	106885850	106886850	+	784.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175402, exon 1 of 1)	exon (NM_175402, exon 1 of 1)	650.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	53.77	16.13	27.75	39.81	12.6	16.08	48.58	12.82	24.98
Merged-chr10-120363618-1	chr10	120363118	120364118	+	784.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010441, exon 5 of 5)	3' UTR (NM_010441, exon 5 of 5)	-25905.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	5.15	8.29	3.7	14.17	5.13	8.84	17.96	14.59	6.87
Merged-chr7-109629000-3	chr7	109628509	109629509	+	784.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11862.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	9.72	10.6	7.4	12.82	7.93	12.86	7.39	7.96	2.5
Merged-chr13-113421689-3	chr13	113421191	113422191	+	784.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81153.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	25.74	19.35	22.2	24.29	17.26	36.17	27.46	30.51	12.49
Merged-chr12-55385105-3	chr12	55384613	55385613	+	784.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310583, intron 1 of 6)	intron (NM_001310583, intron 1 of 6)	891.0	NM_001310583	26443.0	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	8.01	10.6	14.8	14.84	13.06	28.94	16.9	11.05	23.73
Merged-chr15-93336400-3	chr15	93335918	93336918	+	784.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028315, exon 2 of 5)	non-coding (NR_028315, exon 2 of 5)	517.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	49.77	49.76	41.62	63.42	34.06	31.35	74.99	18.13	19.36
Merged-chr11-110464077-3	chr11	110463571	110464571	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MTE2a|LTR|ERVL-MaLR	-14444.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.15	3.69	12.95	18.22	9.33	11.25	32.74	14.15	18.11
Merged-chr1-84318799-3	chr1	84318298	84319298	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34153.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	20.02	24.88	16.65	20.92	30.32	24.11	22.18	24.76	36.85
Merged-chrX-37127226-1	chrX	37126726	37127726	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025937, exon 1 of 9)	exon (NM_025937, exon 1 of 9)	463.0	NM_025937	67050.0	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	57.21	57.6	40.7	43.18	71.38	88.42	52.81	60.13	39.35
Merged-chr9-95180675-3	chr9	95180171	95181171	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 14 of 15)	intron (NM_177909, intron 14 of 15)	226599.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	9.72	10.14	2.77	19.57	10.26	13.66	3.17	2.21	6.87
Merged-chr2-131079091-3	chr2	131078608	131079608	+	784.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011426, intron 8 of 20)	intron (NM_011426, intron 8 of 20)	7657.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	13.16	9.22	21.27	14.84	9.33	17.68	19.01	11.05	10.62
Merged-chr5-138158062-2	chr5	138157565	138158565	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2321.0	NM_019747	56314.0	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	5.15	5.07	11.1	11.47	4.67	9.65	12.67	4.86	18.74
Merged-chr7-30683620-1	chr7	30683120	30684120	+	784.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12015.0	NR_027848	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	4.58	3.69	3.7	4.72	4.67	4.82	5.28	3.98	6.87
Merged-chr17-50149908-2	chr17	50149398	50150398	+	784.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40599.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	28.6	29.49	32.37	26.99	26.59	15.27	49.64	36.26	13.12
Merged-chr5-32085765-3	chr5	32085270	32086270	+	784.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50702.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	1.72	2.3	1.85	4.05	1.87	10.45	3.17	3.1	6.25
Merged-chr17-55963337-3	chr17	55962833	55963833	+	784.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028381, intron 3 of 7)	intron (NM_028381, intron 3 of 7)	-3932.0	NR_108021	100504333.0	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	31.46	14.28	20.35	22.27	7.93	7.23	30.63	23.43	7.49
Merged-chr3-133754404-2	chr3	133753884	133754884	+	784.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-209994.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	8.58	3.69	0.0	2.7	6.53	4.02	4.22	3.54	3.75
Merged-chr1-132794656-3	chr1	132794171	132795171	+	784.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52874.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	3.43	3.23	0.0	4.72	1.4	4.82	3.17	0.0	3.75
Merged-chr14-47513868-3	chr14	47513358	47514358	+	784.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	intron (NR_027414, intron 4 of 5)	41297.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	20.59	20.74	27.75	21.59	14.46	13.66	31.69	28.3	26.85
Merged-chr2-26119812-3	chr2	26119315	26120315	+	784.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026495, intron 1 of 5)	intron (NM_026495, intron 1 of 5)	2996.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	4.0	6.91	2.77	8.77	8.86	7.23	4.22	5.75	1.87
Merged-chr16-20309691-2	chr16	20309175	20310175	+	784.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_183158, exon 9 of 9)	3' UTR (NM_183158, exon 9 of 9)	-7313.0	NM_001005767	381038.0	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	17.73	11.52	12.95	23.62	17.26	38.58	26.4	18.57	20.61
Merged-chr4-59853385-2	chr4	59852915	59853915	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	L2a|LINE|L2	47765.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	16.02	10.14	22.2	13.49	8.4	12.06	3.17	4.42	6.25
Merged-chr17-70993608-3	chr17	70993092	70994092	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357820)	TTS (NM_001357820)	-3076.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	80.09	111.05	50.87	66.8	91.9	85.2	90.83	100.81	36.22
Merged-chr5-72822612-1	chr5	72822112	72823112	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	45836.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	6.86	6.45	10.17	11.47	8.86	20.9	5.28	2.21	8.74
Merged-chr12-82367002-1	chr12	82366502	82367502	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 7 of 23)	intron (NM_001167983, intron 7 of 23)	55653.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	6.86	7.37	7.4	2.7	7.0	16.88	3.17	10.61	6.25
Merged-chr2-73160968-2	chr2	73160472	73161472	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030091, intron 4 of 7)	ORR1D2|LTR|ERVL-MaLR	53475.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	2.86	1.38	1.85	6.07	5.6	9.65	7.39	6.19	1.25
Merged-chr10-75781040-2	chr10	75780540	75781540	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133994, exon 1 of 5)	5' UTR (NM_133994, exon 1 of 5)	374.0	NM_133994	103140.0	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	19.45	21.66	11.1	26.99	20.53	12.86	13.73	17.24	14.99
Merged-chr6-92989325-1	chr6	92988825	92989825	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	48743.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	10.87	10.6	7.4	25.64	39.19	28.13	3.17	5.75	0.0
Merged-chr4-120589987-1	chr4	120589487	120590487	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101603, intron 1 of 2)	intron (NM_001101603, intron 1 of 2)	1242.0	NM_001101603	667063.0	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	4.0	5.53	3.7	1.35	0.47	7.23	6.34	4.86	3.75
Merged-chr4-128769749-3	chr4	128769246	128770246	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001009819)	TTS (NM_001009819)	10488.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	13.16	6.45	9.25	20.24	12.6	7.23	8.45	3.54	1.25
Merged-chr13-56354020-1	chr13	56353520	56354520	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8880.0	NR_046061	100038494.0	Mm.370447	NR_046061	ENSMUSG00000074885	Gm10782	-	predicted gene 10782	ncRNA	70.93	60.36	49.95	78.94	67.18	73.95	57.03	43.33	36.22
Merged-chr15-38567586-2	chr15	38567085	38568085	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045757, intron 2 of 2)	intron (NR_045757, intron 2 of 2)	27349.0	NR_045757	69679.0	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	6.86	2.76	9.25	10.12	4.67	9.65	5.28	0.88	6.25
Merged-chr17-33818229-2	chr17	33817729	33818729	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6333.0	NM_016844	54127.0	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	54.92	59.9	58.27	100.53	62.98	85.2	63.37	71.19	33.72
Merged-chr1-50804944-2	chr1	50804449	50805449	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122574.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	4.58	1.84	1.85	6.75	1.87	8.04	2.11	7.52	0.0
Merged-chr7-125597251-1	chr7	125596751	125597751	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6178.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	64.07	85.71	66.6	28.34	31.72	49.03	111.96	110.1	55.58
Merged-chr5-41550081-1	chr5	41549581	41550581	+	784.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	157610.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	5.15	6.45	0.0	4.72	1.4	0.0	10.56	4.86	12.49
Merged-chr17-31108580-2	chr17	31108081	31109081	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009593, intron 9 of 14)	intron (NM_009593, intron 9 of 14)	21030.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	1.72	5.53	10.17	12.82	7.46	13.66	5.28	1.77	13.12
Merged-chr11-83639906-2	chr11	83639372	83640372	+	784.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9506.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	70.93	43.77	31.45	149.11	70.44	61.89	62.31	35.37	39.35
Merged-chr11-107478649-2	chr11	107478115	107479115	+	784.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025894)	promoter-TSS (NM_025894)	-913.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	27.46	20.27	37.92	41.16	18.19	31.35	41.19	31.84	30.6
Merged-chr2-129221269-3	chr2	129220773	129221773	+	784.461121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045838, intron 1 of 4)	intron (NR_045838, intron 1 of 4)	2304.0	NR_045838	329513.0	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	6.29	3.23	5.55	9.45	1.87	5.63	4.22	4.42	3.75
Merged-chr3-149281549-3	chr3	149281037	149282037	+	784.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6800.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	25.74	17.51	3.7	32.39	19.13	12.86	8.45	12.82	7.49
Merged-chr7-143295780-3	chr7	143295226	143296226	+	784.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	821.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	144.16	158.97	67.52	142.37	126.42	85.2	129.91	143.7	56.83
Merged-chr18-11860563-3	chr18	11860048	11861048	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-20110.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	5.15	5.99	1.85	6.75	2.33	9.65	5.28	3.1	1.25
Merged-chr2-120564676-3	chr2	120564199	120565199	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011743)	promoter-TSS (NM_011743)	-840.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	83.52	79.25	94.35	103.23	48.52	74.75	149.98	175.54	64.33
Merged-chr2-153115872-3	chr2	153115369	153116369	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	intron (NM_001172117, intron 1 of 12)	7401.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	54.92	72.34	62.9	45.21	37.79	77.97	61.26	65.88	79.32
Merged-chr6-51919170-3	chr6	51918659	51919659	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	93390.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	20.02	5.99	14.8	10.12	5.6	10.45	19.01	15.48	13.12
Merged-chr9-64744064-3	chr9	64743571	64744571	+	784.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-6315.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	39.47	26.73	52.72	55.33	19.13	22.51	25.35	19.46	25.61
Merged-chr10-81086786-2	chr10	81086293	81087293	+	784.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145365, intron 8 of 11)	B4A|SINE|B4	12079.0	NM_145365	208677.0	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	16.02	19.35	34.22	16.19	9.33	9.65	8.45	10.61	18.74
Merged-chr3-59235027-2	chr3	59234517	59235517	+	784.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 18 of 43)	intron (NM_177855, intron 18 of 43)	-24135.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	34.32	59.44	33.3	33.74	30.32	37.78	42.25	35.37	37.47
Merged-chr15-38651670-3	chr15	38651170	38652170	+	784.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-10234.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	31.46	21.66	15.72	37.11	18.66	20.9	21.12	16.36	15.61
Merged-chr15-81106388-2	chr15	81105891	81106891	+	784.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-1344.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	28.03	32.72	20.35	25.64	21.46	33.76	27.46	20.34	23.11
Merged-chr8-77506713-2	chr8	77506215	77507215	+	784.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-10341.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	8.01	6.45	5.55	4.72	2.8	1.61	0.0	3.54	9.99
Merged-chr18-80194086-1	chr18	80193586	80194586	+	784.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_131039)	TTS (NR_131039)	6533.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	2.86	6.91	1.85	12.82	4.2	20.09	8.45	5.31	7.49
Merged-chr1-24461216-3	chr1	24460720	24461720	+	784.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 12 of 50)	intron (NM_007733, intron 12 of 50)	126217.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	14.87	10.14	12.02	8.77	10.26	6.43	6.34	13.71	15.61
Merged-chr11-60211049-1	chr11	60210549	60211549	+	784.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358314)	promoter-TSS (NM_001358314)	-578.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	129.28	94.0	52.72	145.06	79.77	66.71	133.08	93.74	22.48
Merged-chr13-54057103-1	chr13	54056603	54057603	+	784.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1445.0	NM_010076	13488.0	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	2.86	2.3	11.1	0.67	0.93	0.0	6.34	1.77	2.5
Merged-chr6-43349178-2	chr6	43348639	43349639	+	784.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	Lx8|LINE|L1	-39585.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	14.3	14.28	17.57	19.57	17.26	20.9	8.45	13.71	14.36
Merged-chr7-67484941-3	chr7	67484444	67485444	+	784.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112086.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	2.29	4.15	7.4	7.42	4.2	11.25	11.62	3.1	7.49
Merged-chr13-42331322-2	chr13	42330829	42331829	+	784.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29853.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.15	5.53	0.0	8.1	2.33	7.23	8.45	3.1	7.49
Merged-chr13-101840035-2	chr13	101839543	101840543	+	784.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71826.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	54.35	50.23	49.95	49.93	45.72	36.17	66.54	78.71	43.09
Merged-chr8-124912118-3	chr8	124911632	124912632	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14246.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	20.59	17.97	12.02	28.34	23.79	19.29	16.9	3.54	8.74
Merged-chr8-46136527-1	chr8	46136027	46137027	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-12381.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	25.17	43.31	15.72	26.31	28.92	35.37	26.4	30.51	43.09
Merged-chr15-40048008-2	chr15	40047525	40048525	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155348, intron 1 of 2)	intron (NR_155348, intron 1 of 2)	2837.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	6.86	5.99	0.0	8.1	10.26	8.04	9.51	6.63	5.0
Merged-chr16-11053997-2	chr16	11053505	11054505	+	784.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12293.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	20.02	5.07	12.02	14.17	7.93	8.84	17.96	7.07	6.25
Merged-chr5-149286158-2	chr5	149285672	149286672	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009663, intron 4 of 4)	intron (NM_009663, intron 4 of 4)	21168.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	4.58	3.69	14.8	8.1	5.13	3.22	12.67	2.65	5.0
Merged-chr10-120231883-3	chr10	120231381	120232381	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025431, exon 3 of 3)	3' UTR (NM_025431, exon 3 of 3)	4821.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	4.0	3.69	3.7	1.35	1.87	4.02	0.0	3.1	4.37
Merged-chr14-55737560-4	chr14	55737132	55738132	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8052.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	93.24	116.58	86.95	99.18	80.24	106.9	119.35	136.63	98.68
Merged-chrX-155606235-2	chrX	155605725	155606725	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001093750, intron 1 of 2)	intron (NM_001093750, intron 1 of 2)	17102.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	1.72	4.61	1.85	3.37	2.33	6.43	3.17	0.0	0.0
Merged-chr10-37140291-4	chr10	37139845	37140845	+	784.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1419.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	165.9	233.16	183.14	134.94	126.89	172.01	158.43	203.84	150.51
Merged-chr1-167517909-3	chr1	167517461	167518461	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51181.0	NM_001013382	240899.0	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	6.86	3.69	6.47	9.45	7.93	9.65	3.17	2.65	0.62
Merged-chr13-100317514-3	chr13	100317020	100318020	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010871)	promoter-TSS (NM_010871)	168.0	NM_021545	53880.0	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	38.33	32.72	22.2	33.06	20.06	29.74	73.93	48.2	16.86
Merged-chr6-116186696-3	chr6	116186200	116187200	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	intron (NM_177412, intron 1 of 5)	6674.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	29.17	29.95	59.2	41.83	28.92	28.94	38.02	23.43	33.1
Merged-chr4-141514447-3	chr4	141513955	141514955	+	784.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	24142.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	21.74	17.97	13.87	22.94	13.53	14.47	115.12	100.81	45.59
Merged-chr3-50439029-3	chr3	50438537	50439537	+	784.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011990, intron 1 of 11)	intron (NM_011990, intron 1 of 11)	4576.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	13.16	9.22	3.7	6.75	7.93	8.84	2.11	3.54	1.25
Merged-chr2-120544945-3	chr2	120544468	120545468	+	784.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 3 of 21)	Lx7|LINE|L1	18891.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	17.73	14.28	7.4	20.24	7.0	9.65	12.67	12.38	11.87
Merged-chr18-67500747-1	chr18	67500247	67501247	+	784.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176832, intron 9 of 13)	intron (NM_176832, intron 9 of 13)	35898.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	8.01	4.15	9.25	6.07	9.8	8.04	5.28	5.75	3.75
Merged-chr3-98051904-2	chr3	98051392	98052392	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	38354.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	16.02	11.52	20.35	12.14	9.8	16.08	14.79	11.05	13.12
Merged-chr7-129526192-1	chr7	129525692	129526692	+	784.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65671.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	7.44	7.37	5.55	6.07	10.73	12.86	17.96	6.19	2.5
Merged-chr19-32112037-3	chr19	32111523	32112523	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8883.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	52.06	34.56	19.42	32.39	38.25	35.37	33.8	32.28	34.97
Merged-chr10-24131667-3	chr10	24131175	24132175	+	784.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17614.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	8.01	9.22	7.4	10.12	3.73	9.65	12.67	9.73	11.24
Merged-chr12-69458151-2	chr12	69457639	69458639	+	784.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17411.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	77.23	75.57	37.92	102.56	84.9	56.27	81.33	91.09	33.72
Merged-chr10-98948262-2	chr10	98947765	98948765	+	784.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	33113.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	13.16	22.12	14.8	29.69	13.53	16.08	24.29	16.8	14.99
Merged-chr1-87632315-2	chr1	87631805	87632805	+	784.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 1 of 26)	L1M5|LINE|L1	11993.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	43.48	38.71	37.0	43.18	32.19	45.01	42.25	42.89	23.11
Merged-chr9-48821635-3	chr9	48821151	48822151	+	784.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	intron (NM_001033324, intron 2 of 6)	14294.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	8.58	11.98	5.55	18.22	15.86	9.65	7.39	11.5	12.49
Merged-chr9-106428835-3	chr9	106428329	106429329	+	784.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001324534)	promoter-TSS (NM_001324534)	-582.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	129.28	140.08	86.02	64.77	82.57	67.52	85.55	133.98	99.92
Merged-chr17-74601377-3	chr17	74600894	74601894	+	784.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007566, intron 19 of 72)	intron (NM_007566, intron 19 of 72)	73099.0	NM_007566	12211.0	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	54.92	70.04	51.8	45.88	31.72	40.99	81.33	91.09	56.83
Merged-chr18-44714653-2	chr18	44714142	44715142	+	784.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-52376.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	1.72	4.61	5.55	4.72	7.0	13.66	1.06	5.31	5.0
Merged-chr3-92081144-4	chr3	92080629	92081629	+	784.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008508, exon 2 of 2)	exon (NM_008508, exon 2 of 2)	2013.0	NM_008508	16939.0	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	6.29	0.46	1.85	1.35	0.47	3.22	2.11	0.44	1.25
Merged-chr1-163899812-3	chr1	163899300	163900300	+	784.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-29300.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	6.86	5.07	1.85	6.07	6.06	4.82	3.17	6.63	3.75
Merged-chr16-77329314-3	chr16	77328832	77329832	+	784.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015543)	promoter-TSS (NR_015543)	4.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	18.88	21.66	15.72	20.24	14.46	12.86	10.56	4.86	5.62
Merged-chr12-73606083-3	chr12	73605599	73606599	+	784.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	MTD|LTR|ERVL-MaLR	21303.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	22.31	34.56	18.5	39.81	32.66	27.33	19.01	19.46	13.74
Merged-chr2-181918756-3	chr2	181918258	181919258	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54398.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	2.29	2.3	1.85	3.37	7.46	4.82	2.11	0.44	3.75
Merged-chr13-19841296-3	chr13	19840798	19841798	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17041.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	14.3	14.75	19.42	18.22	9.8	10.45	9.51	6.19	5.0
Merged-chr8-83783323-3	chr8	83782803	83783803	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41992.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	7.44	3.69	0.0	4.72	2.33	4.02	3.17	1.33	9.37
Merged-chr5-43883122-3	chr5	43882620	43883620	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	14311.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	121.28	166.34	96.2	148.44	110.56	110.12	136.25	156.09	99.92
Merged-chr11-54957161-3	chr11	54956657	54957657	+	784.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199275, intron 1 of 18)	intron (NM_001199275, intron 1 of 18)	5783.0	NM_021327	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	48.62	48.38	36.07	50.6	37.79	20.09	39.08	29.18	28.1
Merged-chr9-42138520-1	chr9	42138020	42139020	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14223.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	9.15	7.83	12.95	6.75	8.86	1.61	7.39	5.31	13.12
Merged-chr19-32762646-2	chr19	32762128	32763128	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	5051.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	93.24	111.51	37.0	66.8	76.04	41.8	103.51	115.85	54.96
Merged-chr3-149173751-1	chr3	149173251	149174251	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100986.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	1.72	1.38	0.0	2.7	0.93	0.0	1.06	0.88	0.0
Merged-chr18-74913907-1	chr18	74913407	74914407	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	47356.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	1.14	4.61	1.85	3.37	3.73	0.0	3.17	2.21	0.0
Merged-chr10-67288042-1	chr10	67287542	67288542	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2761.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	20.02	15.67	14.8	24.96	14.0	12.86	30.63	21.67	26.23
Merged-chr3-64204965-1	chr3	64204465	64205465	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-67485.0	NM_001104592	100125586.0	Mm.469888	NM_001104592	ENSMUSG00000043897	Vmn2r2	-	vomeronasal 2, receptor 2	protein-coding	2.29	3.23	0.0	10.8	1.87	6.43	3.17	6.19	12.49
Merged-chr12-110698818-1	chr12	110698318	110699318	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2423.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	5.15	2.76	0.0	19.57	14.93	17.68	23.24	27.86	13.74
Merged-chr14-27178719-1	chr14	27178219	27179219	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	34726.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	13.16	8.29	10.17	34.41	10.26	26.53	9.51	4.42	8.12
Merged-chr18-89197247-1	chr18	89196747	89197747	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178687)	promoter-TSS (NM_178687)	-180.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	11.44	11.98	3.7	12.14	6.06	1.61	6.34	3.54	7.49
Merged-chr2-103439863-1	chr2	103439363	103440363	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010125, intron 3 of 6)	intron (NM_010125, intron 3 of 6)	15795.0	NM_010125	13711.0	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	1.14	1.84	7.4	2.02	4.67	8.04	4.22	3.1	5.0
Merged-chr5-12206647-1	chr5	12206147	12207147	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-176519.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	13.73	17.05	17.57	14.17	14.93	19.29	11.62	11.5	16.24
Merged-chr17-45801439-1	chr17	45800939	45801939	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66933.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	0.0	0.92	1.85	2.7	1.87	4.02	2.11	0.44	3.75
Merged-chr10-111050446-1	chr10	111049946	111050946	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-40380.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	2.29	5.07	5.55	4.05	5.13	6.43	2.11	5.75	1.87
Merged-chr16-49504030-2	chr16	49503504	49504504	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-195290.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	10.3	7.83	3.7	14.17	5.6	6.43	12.67	6.19	14.36
Merged-chr2-45840596-1	chr2	45840096	45841096	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	143991.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	3.43	5.07	1.85	0.67	5.6	1.61	5.28	8.4	2.5
Merged-chr1-79768389-1	chr1	79767889	79768889	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6620.0	NM_027057	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	16.59	20.27	20.35	14.84	22.86	26.53	7.39	8.84	2.5
Merged-chr11-4422268-1	chr11	4421768	4422768	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029458, intron 5 of 10)	intron (NM_029458, intron 5 of 10)	18814.0	NM_029458	75828.0	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	6.86	5.53	1.85	4.05	3.73	0.0	9.51	1.77	1.25
Merged-chr16-16565936-1	chr16	16565436	16566436	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	MTD|LTR|ERVL-MaLR	-5717.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.43	9.68	7.4	6.07	5.6	12.06	6.34	8.4	8.74
Merged-chr4-141713827-3	chr4	141713310	141714310	+	784.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	RLTR30D2_MM|LTR|ERV1	9609.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	16.59	10.14	7.4	36.43	14.93	16.08	10.56	5.31	10.62
Merged-chrY-90805101-1	chrY	90804601	90805601	+	784.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	L1_Mm|LINE|L1	19659.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	5.15	2.76	2.77	2.7	3.27	9.65	13.73	8.4	33.1
Merged-chr2-119263117-1	chr2	119262617	119263617	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8109.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	5.72	2.3	5.55	6.07	4.2	7.23	0.0	3.1	3.75
Merged-chr13-25007411-1	chr13	25006911	25007911	+	784.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013389, intron 2 of 10)	IAPEY4_LTR|LTR|ERVK	12906.0	NM_001013389	380836.0	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	2.29	1.38	3.7	0.67	0.93	4.82	1.06	3.1	1.25
Merged-chr6-17754610-1	chr6	17754110	17755110	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	5440.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	6.29	1.84	0.92	4.05	8.86	5.63	2.11	3.54	4.37
Merged-chr13-22021067-1	chr13	22020567	22021567	+	784.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11326.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	16.59	23.96	7.4	7.42	7.0	14.47	5.28	1.33	2.5
Merged-chr6-54955765-3	chr6	54955254	54956254	+	783.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	15907.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	67.5	105.98	86.02	68.82	73.71	61.89	199.62	233.91	161.13
Merged-chr13-3776642-3	chr13	3776141	3777141	+	783.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	27677.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.0	5.07	1.85	2.02	3.73	1.61	2.11	0.0	1.25
Merged-chr11-65784553-3	chr11	65784042	65785042	+	783.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316368, intron 1 of 10)	intron (NM_001316368, intron 1 of 10)	3817.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	7.44	3.23	7.4	6.07	3.73	4.02	4.22	8.4	1.25
Merged-chr7-84594634-3	chr7	84594125	84595125	+	783.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010176, intron 9 of 13)	intron (NM_010176, intron 9 of 13)	11317.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	4.58	5.99	4.62	4.05	1.87	3.22	4.22	0.88	2.5
Merged-chr12-102501239-3	chr12	102500736	102501736	+	783.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	31326.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	8.01	7.37	5.55	9.45	7.0	9.65	4.22	0.44	3.75
Merged-chr14-30548267-5	chr14	30547838	30548838	+	783.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009388)	promoter-TSS (NM_009388)	-793.0	NM_009388	21881.0	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	83.52	73.26	87.87	79.62	69.04	76.36	106.67	140.61	68.7
Merged-chr11-119053415-3	chr11	119052917	119053917	+	783.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12504.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	2.86	2.76	3.7	2.7	0.47	0.0	5.28	1.33	3.75
Merged-chr9-83593078-2	chr9	83592574	83593574	+	783.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	44736.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	6.29	4.61	3.7	4.05	2.8	2.41	3.17	2.65	2.5
Merged-chr16-91729825-2	chr16	91729338	91730338	+	783.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	CpG	467.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	67.5	46.54	79.55	87.04	45.72	72.34	119.35	61.02	49.34
Merged-chr2-112394164-3	chr2	112393668	112394668	+	783.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	L2|LINE|L2	14957.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	8.58	11.98	7.4	23.62	8.4	13.66	5.28	9.73	14.99
Merged-chr2-133430767-2	chr2	133430266	133431266	+	783.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121393.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	13.16	6.91	7.4	12.82	18.19	16.88	16.9	10.17	9.99
Merged-chr7-98374762-2	chr7	98374261	98375261	+	783.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	-13433.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	1.72	4.15	5.55	8.1	5.6	3.22	4.22	1.33	3.75
Merged-chr10-45960425-2	chr10	45959919	45960919	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152715.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	17.73	12.9	10.17	13.49	14.93	19.29	11.62	11.5	12.49
Merged-chr18-39582097-1	chr18	39581597	39582597	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94852.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.44	10.6	12.02	8.1	15.86	19.29	17.96	11.5	10.62
Merged-chr11-116633103-1	chr11	116632603	116633603	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6084.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	11.44	14.28	5.55	20.92	5.6	6.43	2.11	1.33	2.5
Merged-chr2-58159251-2	chr2	58158755	58159755	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139200, intron 1 of 7)	intron (NM_139200, intron 1 of 7)	867.0	NM_139200	227929.0	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	30.89	40.09	13.87	82.99	100.77	126.19	43.3	62.35	44.97
Merged-chr15-74753004-2	chr15	74752502	74753502	+	783.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011838)	promoter-TSS (NM_011838)	-23.0	NM_011838	23936.0	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0.0	1.84	1.85	0.67	0.47	3.22	3.17	0.88	6.25
Merged-chr2-154374216-3	chr2	154373703	154374703	+	783.738892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1484.0	NM_025876	66971.0	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	15.45	5.07	1.85	6.75	2.33	3.22	10.56	5.31	5.0
Merged-chr9-31050430-3	chr9	31049935	31050935	+	783.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115130, intron 1 of 5)	B4A|SINE|B4	19791.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	4.58	5.07	4.62	14.84	4.2	7.23	4.22	3.1	5.62
Merged-chr2-167687790-3	chr2	167687288	167688288	+	783.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1127.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	44.05	17.51	21.27	33.74	22.39	62.7	17.96	8.4	17.49
Merged-chr3-131300105-3	chr3	131299603	131300603	+	783.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027816, intron 1 of 4)	L1M5|LINE|L1	3124.0	NM_027816	71519.0	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.0	3.69	1.85	4.05	3.73	0.0	2.11	1.33	3.75
Merged-chr5-113812250-3	chr5	113811738	113812738	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6B_Mm|LTR|ERV1	-11886.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	23.45	8.75	12.02	13.49	4.67	8.04	9.51	15.48	18.74
Merged-chr13-113877598-2	chr13	113877086	113878086	+	783.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	83078.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.0	0.92	1.85	2.7	6.06	6.43	11.62	8.4	6.87
Merged-chr6-66537469-3	chr6	66536997	66537997	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355624, intron 2 of 5)	intron (NM_001355624, intron 2 of 5)	2276.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	12.01	14.75	2.77	10.12	9.8	2.41	20.07	16.36	9.99
Merged-chr6-31079091-1	chr6	31078591	31079591	+	783.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15998.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	147.02	104.14	69.37	200.39	143.22	159.95	162.65	150.34	86.81
Merged-chr18-46153227-3	chr18	46152733	46153733	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45585.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	13.73	5.53	0.0	6.75	5.13	3.22	12.67	11.05	9.37
Merged-chr1-131470820-3	chr1	131470323	131471323	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	B3|SINE|B2	56538.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	40.62	38.25	16.65	32.39	20.53	35.37	29.57	23.88	24.98
Merged-chr3-79539860-3	chr3	79539366	79540366	+	783.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	27813.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	8.58	7.83	7.4	20.92	10.73	8.84	10.56	7.07	9.37
Merged-chr1-128615659-2	chr1	128615176	128616176	+	783.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-23377.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	42.9	53.45	36.07	47.9	56.45	65.11	14.79	11.94	17.49
Merged-chr13-48566487-2	chr13	48565985	48566985	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28213.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	29.17	30.87	25.9	26.31	34.52	47.42	24.29	29.18	23.11
Merged-chr6-21958283-2	chr6	21957778	21958778	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311061, intron 4 of 11)	intron (NM_001311061, intron 4 of 11)	8663.0	NM_023626	71777.0	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	33.75	42.39	31.45	39.81	46.18	22.51	48.58	38.03	45.59
Merged-chr4-95250308-2	chr4	95249821	95250821	+	783.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198099.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.15	4.61	3.7	4.05	4.67	9.65	4.22	5.75	1.25
Merged-chr6-48676145-2	chr6	48675649	48676649	+	783.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174960)	promoter-TSS (NM_174960)	14.0	NM_174960	317758.0	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	21.74	36.4	24.97	4.72	5.13	1.61	16.9	7.07	6.25
Merged-chr15-98830888-3	chr15	98830420	98831420	+	783.561096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033276)	TTS (NM_001033276)	588.0	NM_016781	19082.0	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	251.7	274.17	169.27	216.58	202.0	237.92	195.39	243.63	153.01
Merged-chr10-93471575-3	chr10	93471013	93472013	+	783.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008517, intron 10 of 18)	intron (NM_008517, intron 10 of 18)	-17255.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.58	7.37	1.85	8.1	7.93	0.0	8.45	6.63	4.37
Merged-chr1-58716476-1	chr1	58715976	58716976	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	3190.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	32.61	41.47	36.07	38.46	28.46	40.19	32.74	32.28	39.97
Merged-chr4-56086451-2	chr4	56085963	56086963	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-553988.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.29	5.07	7.4	6.75	3.27	6.43	4.22	5.31	6.25
Merged-chrX-164438005-1	chrX	164437505	164438505	+	783.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313737, intron 1 of 6)	intron (NM_001313737, intron 1 of 6)	1011.0	NM_001313737	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	5.15	3.69	0.0	1.35	2.8	1.61	7.39	5.75	4.37
Merged-chr15-59787428-1	chr15	59786928	59787928	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045076)	TTS (NR_045076)	7531.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	5.72	4.15	3.7	9.45	5.13	4.82	3.17	0.44	1.25
Merged-chr3-154177892-2	chr3	154177402	154178402	+	783.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	152658.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	9.15	4.15	5.55	5.4	3.73	7.23	4.22	0.88	6.25
Merged-chr16-38709389-1	chr16	38708889	38709889	+	783.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	3646.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	8.58	4.15	7.4	3.37	1.87	6.43	6.34	1.33	7.49
Merged-chr17-17826129-1	chr17	17825629	17826629	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4059.0	NR_029536	387230.0		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	7.44	6.91	8.32	22.27	13.53	20.9	6.34	1.77	9.37
Merged-chr1-52331575-2	chr1	52331062	52332062	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98330.0	NM_001113383	14660.0	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	1.14	2.3	5.55	9.45	13.06	23.31	3.17	2.21	3.75
Merged-chr9-120858392-1	chr9	120857892	120858892	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	56858.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.15	3.69	7.4	4.05	2.8	14.47	2.11	0.88	5.0
Merged-chr6-86600178-2	chr6	86599712	86600712	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27962.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	6.86	7.83	1.85	6.75	1.4	0.0	7.39	6.19	5.0
Merged-chr13-9449227-2	chr13	9448721	9449721	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	172696.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	14.87	17.97	25.9	18.89	9.33	11.25	14.79	15.48	17.49
Merged-chr4-87812617-2	chr4	87812098	87813098	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-6275.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	6.86	3.69	7.4	3.37	2.33	3.22	4.22	9.29	7.49
Merged-chr7-49741714-1	chr7	49741214	49742214	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17392.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	4.0	2.3	0.0	4.72	4.2	6.43	3.17	7.07	3.75
Merged-chr4-139240546-1	chr4	139240046	139241046	+	783.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	46435.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	8.58	17.05	21.27	33.74	24.26	39.39	32.74	20.78	10.62
Merged-chr14-55763674-4	chr14	55763143	55764143	+	783.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020490)	TTS (NM_020490)	2215.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	73.79	98.15	73.07	68.82	70.91	83.59	82.38	114.96	69.95
Merged-chr1-151917926-3	chr1	151917440	151918440	+	783.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 4 of 5)	intron (NM_197990, intron 4 of 5)	162566.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	33.18	24.42	22.2	30.36	22.86	19.29	22.18	13.27	11.24
Merged-chr17-79020582-4	chr17	79020103	79021103	+	783.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171004, intron 1 of 18)	CpG	213.0	NM_001171004	75292.0	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	10.3	2.3	0.0	18.22	5.13	15.27	9.51	4.42	6.25
Merged-chr4-55366208-3	chr4	55365707	55366707	+	783.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	MTC|LTR|ERVL-MaLR	16165.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	17.16	13.36	1.85	8.77	7.46	12.06	10.56	12.38	13.74
Merged-chr16-10982746-3	chr16	10982237	10983237	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	L2b|LINE|L2	10384.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	18.31	28.11	49.02	20.24	20.53	44.21	33.8	23.43	38.1
Merged-chr11-20329889-3	chr11	20329391	20330391	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	2822.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	6.29	2.3	3.7	7.42	5.6	1.61	7.39	6.19	2.5
Merged-chr5-24598732-3	chr5	24598228	24599228	+	783.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025891, exon 2 of 13)	exon (NM_025891, exon 2 of 13)	3274.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	1.14	4.15	2.77	0.67	1.87	4.82	6.34	5.31	2.5
Merged-chr1-36123895-2	chr1	36123383	36124383	+	783.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20430.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	7.44	3.23	5.55	42.51	17.73	28.13	25.35	19.9	13.12
Merged-chr3-138026457-3	chr3	138025940	138026940	+	783.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40948.0	NR_037975	329763.0	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	8.01	10.6	0.0	19.57	7.93	12.86	6.34	1.33	0.0
Merged-chr14-105923024-2	chr14	105922521	105923521	+	783.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26202.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	6.29	2.3	0.0	2.02	3.27	2.41	3.17	1.33	2.5
Merged-chr5-38503176-2	chr5	38502685	38503685	+	783.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1033.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.72	5.53	7.4	14.17	3.27	6.43	13.73	12.82	19.36
Merged-chr8-94418180-2	chr8	94417645	94418645	+	783.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16958.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	9.15	5.53	7.4	8.77	5.13	0.0	5.28	1.33	4.37
Merged-chr9-61971282-2	chr9	61970778	61971778	+	783.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028748, intron 4 of 7)	intron (NM_028748, intron 4 of 7)	-24479.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	26.89	31.33	37.92	33.74	30.79	37.78	47.53	33.6	35.6
Merged-chr12-4841619-2	chr12	4841133	4842133	+	783.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016863)	promoter-TSS (NM_016863)	-38.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	25.17	23.04	35.15	24.29	28.92	36.17	33.8	22.99	29.98
Merged-chr10-56377951-1	chr10	56377451	56378451	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010288, intron 1 of 1)	intron (NM_010288, intron 1 of 1)	651.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	6.29	4.61	3.7	8.1	9.8	1.61	4.22	1.77	3.75
Merged-chr11-116811392-3	chr11	116810857	116811857	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347633, intron 3 of 4)	intron (NM_001347633, intron 3 of 4)	16689.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	17.73	18.43	10.17	24.29	14.0	16.08	3.17	3.54	8.74
Merged-chr7-45181699-1	chr7	45181199	45182199	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053256, exon 3 of 3)	exon (NM_053256, exon 3 of 3)	704.0	NM_053256	114640.0	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	5.15	2.76	1.85	8.1	0.47	6.43	4.22	1.77	4.37
Merged-chr11-119087477-3	chr11	119086994	119087994	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	10.87	4.61	7.4	6.07	3.73	10.45	10.56	10.17	2.5
Merged-chr11-70239176-3	chr11	70238686	70239686	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173742, intron 1 of 2)	intron (NM_173742, intron 1 of 2)	666.0	NM_173742	52898.0	Mm.29852	NM_173742	ENSMUSG00000093989	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	274.01	261.73	173.89	271.91	272.44	179.24	246.09	273.7	169.25
Merged-chr19-12815416-2	chr19	12814915	12815915	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	Lx2B|LINE|L1	16836.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	20.59	28.11	17.57	23.62	27.52	25.72	28.52	17.24	25.61
Merged-chr14-75183037-1	chr14	75182537	75183537	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	46612.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	31.46	47.0	41.62	39.13	36.39	32.96	48.58	32.28	36.22
Merged-chr3-45284119-1	chr3	45283619	45284619	+	783.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045172, intron 6 of 8)	intron (NR_045172, intron 6 of 8)	94141.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	2.29	1.84	0.0	8.1	6.53	12.86	4.22	7.07	3.75
Merged-chr7-99102599-3	chr7	99102138	99103138	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 3 of 14)	RMER17C|LTR|ERVK	38506.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	252.85	217.03	154.47	217.26	132.95	105.3	251.37	219.76	102.42
Merged-chrX-71274394-3	chrX	71273904	71274904	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	RMER19B|LTR|ERVK	59330.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	16.02	21.66	20.35	14.84	13.53	24.92	25.35	16.8	22.48
Merged-chr17-87387231-3	chr17	87386729	87387729	+	783.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40512.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	2.86	2.3	6.47	5.4	2.8	4.82	1.06	3.54	2.5
Merged-chr5-80955558-2	chr5	80955046	80956046	+	783.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65025.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	8.58	5.53	11.1	2.02	1.87	7.23	10.56	3.54	10.62
Merged-chr19-5002285-3	chr19	5001760	5002760	+	783.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12289.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	1.14	1.84	1.85	6.07	0.0	0.0	3.17	1.33	3.75
Merged-chr2-150135434-3	chr2	150134938	150135938	+	783.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023266, intron 1 of 2)	intron (NM_023266, intron 1 of 2)	1240.0	NM_023266	104348.0	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	21.17	20.74	28.67	22.94	24.26	37.78	21.12	29.63	24.98
Merged-chr11-98810689-3	chr11	98810149	98811149	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033551)	promoter-TSS (NR_033551)	-560.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	136.15	137.31	80.47	151.14	114.29	107.71	183.78	245.4	65.58
Merged-chr8-120741187-3	chr8	120740702	120741702	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2563.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	25.17	37.78	24.05	33.74	45.72	67.52	60.2	30.95	34.97
Merged-chr11-44611205-2	chr11	44610710	44611710	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6890.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	2.29	3.23	1.85	6.07	4.67	2.41	1.06	1.33	6.25
Merged-chr1-165739238-2	chr1	165738682	165739682	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24576.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	8.58	4.61	0.92	9.45	6.53	9.65	12.67	7.52	9.99
Merged-chr3-148316377-1	chr3	148315877	148316877	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	638258.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	2.86	1.38	3.7	4.05	3.27	1.61	3.17	2.21	0.0
Merged-chr14-25735581-2	chr14	25735102	25736102	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	33254.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	13.16	12.44	15.72	8.1	10.26	7.23	12.67	4.42	8.74
Merged-chr10-13871229-1	chr10	13870729	13871729	+	783.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-51.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	18.88	19.35	3.7	42.51	34.06	47.42	27.46	31.39	9.37
Merged-chr6-129616394-2	chr6	129615881	129616881	+	783.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286018, intron 4 of 7)	intron (NM_001286018, intron 4 of 7)	6302.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	45.19	62.21	38.85	49.93	37.79	48.23	55.98	47.75	44.97
Merged-chr8-13292582-3	chr8	13292089	13293089	+	783.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172282, intron 2 of 12)	intron (NM_172282, intron 2 of 12)	-4463.0	NM_001042650	102323.0	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	5.72	4.15	6.47	2.02	1.4	4.02	2.11	0.88	1.25
Merged-chr16-11704320-3	chr16	11703810	11704810	+	783.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-75392.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	12.01	10.14	9.25	12.82	10.73	10.45	22.18	16.36	5.0
Merged-chr12-113042052-2	chr12	113041551	113042551	+	783.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	27543.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	13.16	5.99	7.4	9.45	7.0	18.49	8.45	4.86	9.37
Merged-chr2-131206992-2	chr2	131206488	131207488	+	783.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3372.0	NM_001291032	69596.0	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	10.3	8.29	11.1	16.87	6.53	13.66	9.51	5.31	6.87
Merged-chr11-107638292-3	chr11	107637786	107638786	+	783.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105897)	TTS (NR_105897)	564.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	21.74	20.74	5.55	33.06	41.99	19.29	24.29	24.32	7.49
Merged-chr3-136347507-3	chr3	136347011	136348011	+	783.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-21445.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	10.87	10.14	5.55	8.77	4.67	8.04	5.28	8.4	7.49
Merged-chr13-10210958-2	chr13	10210446	10211446	+	783.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 2 of 4)	intron (NM_033269, intron 2 of 4)	149857.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	16.02	12.44	12.95	12.14	8.86	10.45	29.57	11.5	15.61
Merged-chr4-97746099-2	chr4	97745675	97746675	+	783.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-31451.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.29	2.3	5.55	4.72	1.4	3.22	4.22	0.88	2.5
Merged-chr16-29451888-2	chr16	29451397	29452397	+	783.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164613, intron 14 of 21)	intron (NM_001164613, intron 14 of 21)	-73165.0	NM_175650	268878.0	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	6.29	5.07	2.77	5.4	2.33	4.82	5.28	5.75	5.62
Merged-chr3-65863465-3	chr3	65862980	65863980	+	783.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94769.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.86	3.69	0.0	4.05	2.33	2.41	0.0	3.1	2.5
Merged-chr3-22010094-3	chr3	22009590	22010590	+	783.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66562.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	9.15	10.14	12.95	11.47	6.53	16.08	11.62	10.61	6.87
Merged-chr6-148322775-3	chr6	148322281	148323281	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198967, intron 8 of 19)	intron (NM_198967, intron 8 of 19)	-31875.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	4.58	3.69	9.25	5.4	5.13	1.61	5.28	3.98	5.0
Merged-chr16-91785863-2	chr16	91785350	91786350	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 4 of 15)	intron (NM_001110276, intron 4 of 15)	56479.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	12.59	14.28	9.25	16.87	13.06	11.25	13.73	11.5	14.99
Merged-chr3-105927225-2	chr3	105926734	105927734	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033780, exon 4 of 6)	exon (NM_001033780, exon 4 of 6)	5430.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	21.74	11.98	37.92	6.75	3.73	22.51	11.62	7.07	1.25
Merged-chr14-77806492-1	chr14	77805992	77806992	+	783.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7524.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	1.14	2.76	2.77	4.05	3.73	4.82	20.07	7.52	10.62
Merged-chr1-119836966-1	chr1	119836466	119837466	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_019933, exon 1 of 27)	5' UTR (NM_019933, exon 1 of 27)	105.0	NM_019933	19258.0	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	14.87	5.99	9.25	24.29	11.2	7.23	23.24	8.84	6.87
Merged-chr15-90216339-1	chr15	90215839	90216839	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-7972.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	7.44	3.23	9.25	4.72	6.06	3.22	7.39	2.21	6.25
Merged-chr5-23598140-1	chr5	23597640	23598640	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	MTC|LTR|ERVL-MaLR	18431.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.14	4.15	3.7	5.4	1.87	1.61	0.0	0.44	2.5
Merged-chr5-3488462-1	chr5	3487962	3488962	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	MLT1E2|LTR|ERVL-MaLR	-55371.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	4.0	5.99	12.95	24.96	15.86	12.86	10.56	3.1	5.0
Merged-chr3-82333723-1	chr3	82333223	82334223	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24349.0	NM_001081230	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	1.14	3.23	2.77	6.75	6.06	3.22	1.06	4.42	0.0
Merged-chr4-134087611-2	chr4	134087124	134088124	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162970, intron 15 of 19)	intron (NM_001162970, intron 15 of 19)	7449.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	2.29	1.84	0.92	1.35	2.33	1.61	5.28	2.21	2.5
Merged-chr13-42866371-1	chr13	42865871	42866871	+	783.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001302636, exon 1 of 13)	5' UTR (NM_001302636, exon 1 of 13)	124.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	59.49	68.2	48.1	64.77	63.91	69.13	65.48	54.83	44.97
Merged-chr9-13599758-1	chr9	13599258	13600258	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20231.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	9.15	6.45	1.85	8.77	1.87	3.22	3.17	2.65	6.25
Merged-chrX-48526603-2	chrX	48526086	48527086	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	7301.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	2.29	2.76	1.85	4.05	1.4	4.02	4.22	4.86	3.12
Merged-chr7-89419127-1	chr7	89418627	89419627	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7179.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	10.87	7.83	2.77	9.45	7.93	5.63	5.28	3.54	0.0
Merged-chr12-108933976-1	chr12	108933476	108934476	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 2 of 6)	intron (NM_177602, intron 2 of 6)	39704.0	NM_177602	212198.0	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	7.44	2.76	0.0	6.07	5.13	4.82	10.56	8.4	3.75
Merged-chrX-152067970-1	chrX	152067470	152068470	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51542.0	NM_019710	24061.0	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	3.43	4.61	3.7	2.7	2.8	3.22	4.22	3.98	6.25
Merged-chr16-21687561-2	chr16	21687064	21688064	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001881, intron 1 of 1)	Lx8|LINE|L1	7101.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	2.86	9.22	7.4	15.52	16.33	30.54	23.24	22.99	21.23
Merged-chr11-113683411-1	chr11	113682911	113683911	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138598, intron 1 of 2)	intron (NM_138598, intron 1 of 2)	740.0	NM_138598	28081.0	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	96.11	94.0	107.29	82.32	98.43	106.1	81.33	72.52	63.08
Merged-chr8-127440700-2	chr8	127440195	127441195	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033620, intron 20 of 24)	intron (NM_033620, intron 20 of 24)	141043.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	12.01	2.76	5.55	20.92	8.86	16.08	132.02	160.95	88.68
Merged-chr3-144718045-2	chr3	144717533	144718533	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 1 of 10)	intron (NM_001282037, intron 1 of 10)	2302.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	187.63	243.75	128.57	157.21	173.54	131.82	284.11	365.67	134.9
Merged-chr16-87495133-2	chr16	87494602	87495602	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040375)	promoter-TSS (NR_040375)	767.0	NM_009840	12469.0	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	78.37	79.72	58.27	97.83	88.64	100.47	94.0	96.39	67.45
Merged-chr19-43959377-3	chr19	43958827	43959827	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030703, intron 8 of 8)	intron (NM_030703, intron 8 of 8)	-19129.0	NM_028029	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	4.58	1.38	0.0	1.35	0.93	1.61	2.11	0.88	1.25
Merged-chr1-65189758-1	chr1	65189258	65190258	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	3073.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	18.88	25.8	27.75	16.87	17.73	24.11	29.57	23.88	24.98
Merged-chr5-39820240-1	chr5	39819740	39820740	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175609.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	6.29	5.99	14.8	19.57	9.8	6.43	16.9	10.61	9.37
Merged-chr7-107275047-1	chr7	107274547	107275547	+	783.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	65602.0	NM_029660	76572.0	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	1.72	4.61	3.7	6.75	6.53	6.43	3.17	1.77	4.37
Merged-chr14-121451278-3	chr14	121450778	121451778	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53976.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	1.14	1.84	3.7	7.42	5.6	3.22	0.0	8.84	8.74
Merged-chr5-43865967-3	chr5	43865450	43866450	+	783.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2859.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	93.24	99.53	90.65	121.45	134.35	184.87	103.51	105.24	121.16
Merged-chr8-79496519-2	chr8	79496027	79497027	+	782.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97059.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	15.45	4.15	11.1	6.07	8.86	4.82	13.73	2.21	6.87
Merged-chr6-29214601-3	chr6	29214098	29215098	+	782.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302933, intron 1 of 14)	intron (NM_001302933, intron 1 of 14)	1766.0	NM_001302933	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	11.44	4.61	3.7	14.84	5.6	8.04	15.84	6.19	5.0
Merged-chr14-118431654-2	chr14	118431156	118432156	+	782.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65778.0	NR_045624	73306.0	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	6.29	8.75	1.85	6.07	6.06	6.43	3.17	3.1	3.75
Merged-chr19-5912310-3	chr19	5911825	5912825	+	782.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011262, intron 1 of 10)	CpG	546.0	NM_011262	19708.0	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	148.16	123.95	107.29	141.69	112.43	110.92	140.47	164.04	88.06
Merged-chr12-80435863-2	chr12	80435377	80436377	+	782.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177267, intron 1 of 8)	intron (NM_177267, intron 1 of 8)	724.0	NM_177267	320808.0	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	120.7	131.78	101.74	118.08	104.5	140.66	165.82	127.79	103.05
Merged-chr18-61120124-3	chr18	61119621	61120621	+	782.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	2653.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	31.46	41.93	62.9	22.94	29.86	55.46	34.85	34.49	28.73
Merged-chrX-96107643-3	chrX	96107141	96108141	+	782.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	11596.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	49.2	55.29	27.75	43.86	23.33	32.15	31.69	35.82	39.97
Merged-chrX-48355546-3	chrX	48355030	48356030	+	782.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	intron (NM_178782, intron 2 of 14)	14172.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	4.0	4.15	1.85	2.7	5.6	6.43	3.17	3.54	5.0
Merged-chr17-66096897-2	chr17	66096396	66097396	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	4663.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	24.03	27.65	35.15	26.31	26.59	38.58	26.4	29.63	29.98
Merged-chr16-81202175-2	chr16	81201677	81202677	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	1480.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	3.43	3.69	1.85	2.7	0.47	3.22	4.22	3.1	2.5
Merged-chr11-76033983-2	chr11	76033483	76034483	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6201.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	5.15	5.99	1.85	4.72	2.8	3.22	6.34	3.54	6.25
Merged-chr5-41767612-2	chr5	41767140	41768140	+	782.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	5.72	2.3	1.85	4.05	1.87	3.22	5.28	3.1	1.25
Merged-chr17-84646504-3	chr17	84645994	84646994	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172256, intron 8 of 12)	intron (NM_172256, intron 8 of 12)	19995.0	NM_172256	213575.0	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	12.59	11.52	1.85	17.54	14.93	17.68	10.56	12.82	11.87
Merged-chr8-95166071-2	chr8	95165558	95166558	+	782.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23518.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	3.43	3.69	3.7	2.7	2.8	3.22	4.22	2.65	1.25
Merged-chr17-31082668-1	chr17	31082168	31083168	+	782.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	MTD|LTR|ERVL-MaLR	24974.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	24.6	22.58	28.67	33.06	32.19	46.62	35.91	31.39	19.98
Merged-chr16-57130971-3	chr16	57130469	57131469	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138599, intron 1 of 11)	intron (NM_138599, intron 1 of 11)	9255.0	NM_138599	28185.0	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70A	protein-coding	36.04	42.85	65.67	26.31	19.59	10.45	51.75	59.69	13.12
Merged-chr15-75791327-2	chr15	75790845	75791845	+	782.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172121, intron 4 of 11)	intron (NM_172121, intron 4 of 11)	-43423.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	8.58	5.07	10.17	11.47	8.4	4.02	7.39	3.54	8.74
Merged-chr13-9081581-4	chr13	9080998	9081998	+	782.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12383.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	159.03	152.98	83.25	170.03	125.02	112.53	162.65	173.77	78.07
Merged-chr3-88071998-3	chr3	88071470	88072470	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172526, intron 6 of 9)	intron (NM_172526, intron 6 of 9)	6334.0	NM_172526	214191.0	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	5.72	1.38	0.0	2.02	2.33	1.61	1.06	2.65	5.0
Merged-chr15-3228341-3	chr15	3227857	3228857	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42410.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	2.86	11.06	12.95	14.84	14.0	5.63	6.34	6.63	8.74
Merged-chr15-12196986-3	chr15	12196489	12197489	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8039.0	NM_001356498	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.43	1.84	4.62	2.7	5.13	0.0	1.06	0.44	1.25
Merged-chr15-102617818-3	chr15	102617310	102618310	+	782.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310067, intron 1 of 11)	intron (NM_001310067, intron 1 of 11)	7654.0	NM_001310070	223922.0	Mm.208714	NM_146065	ENSMUSG00000099083	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	26.89	41.93	18.5	19.57	22.86	41.8	50.7	54.39	31.85
Merged-chr4-43443253-5	chr4	43442794	43443794	+	782.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011571, exon 1 of 10)	5' UTR (NM_011571, exon 1 of 10)	1017.0	NM_011571	21754.0	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	84.66	77.87	120.24	85.01	75.57	81.18	107.73	92.86	63.7
Merged-chr10-42271585-3	chr10	42271083	42272083	+	782.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	5159.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	86.38	101.83	60.12	83.66	69.51	65.11	116.18	124.25	80.56
Merged-chr12-80329817-2	chr12	80329331	80330331	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61846.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	34.9	40.09	56.42	47.23	49.92	29.74	57.03	54.39	28.1
Merged-chr13-74301349-2	chr13	74300843	74301843	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9012.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	2.29	3.69	0.0	2.7	3.27	1.61	2.11	1.77	2.5
Merged-chr5-76337296-2	chr5	76336793	76337793	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019515, intron 8 of 9)	intron (NM_019515, intron 8 of 9)	6055.0	NR_152115	74621.0	Mm.444687	NR_152115		4930432L08Rik	-	RIKEN cDNA 4930432L08 gene	ncRNA	1.14	1.38	0.0	2.7	3.73	1.61	4.22	4.86	1.25
Merged-chr5-115475915-1	chr5	115475415	115476415	+	782.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8382.0	NM_001167691	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.57	2.3	0.0	2.7	5.13	3.22	7.39	4.86	6.25
Merged-chr13-37291526-2	chr13	37291025	37292025	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53820.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	25.74	21.66	7.4	33.74	40.12	36.97	20.07	25.2	13.74
Merged-chr19-21962847-1	chr19	21962347	21963347	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-176270.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	5.72	5.07	1.85	6.75	1.87	4.82	2.11	0.0	3.75
Merged-chr12-76191165-2	chr12	76190670	76191670	+	782.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NR_104386	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	7.44	3.69	5.55	4.72	2.8	1.61	4.22	3.54	2.5
Merged-chr14-31440911-3	chr14	31440389	31441389	+	782.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4789.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	14.87	12.9	12.95	14.17	8.4	9.65	8.45	8.84	11.87
Merged-chr2-156434490-2	chr2	156433983	156434983	+	782.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013510, intron 1 of 21)	MTC|LTR|ERVL-MaLR	13574.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	2.86	1.38	7.4	6.07	5.6	13.66	12.67	4.42	14.99
Merged-chr4-136505473-2	chr4	136504979	136505979	+	782.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	B3A|SINE|B2	35718.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	24.03	33.64	45.32	39.13	34.99	54.66	19.01	21.22	26.85
Merged-chr1-124045676-3	chr1	124045228	124046228	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199021)	promoter-TSS (NM_199021)	-169.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.43	2.76	3.7	3.37	0.93	2.41	2.11	0.88	3.75
Merged-chr9-67842974-3	chr9	67842474	67843474	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	2578.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	40.04	47.46	41.62	40.48	42.45	53.05	50.7	27.86	24.98
Merged-chr9-55327415-3	chr9	55326912	55327912	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172923, intron 1 of 10)	intron (NM_172923, intron 1 of 10)	499.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	13.16	4.61	4.62	11.47	3.27	1.61	13.73	2.21	0.0
Merged-chr3-80958828-1	chr3	80958328	80959328	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45168.0	NM_001345955	14658.0	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	4.0	4.15	0.0	5.4	2.33	0.8	1.06	1.77	3.75
Merged-chr19-4284480-1	chr19	4283980	4284980	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1343.0	NM_026720	68423.0	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	26.89	24.88	29.6	20.92	14.0	43.4	45.42	18.57	26.85
Merged-chr9-123528964-3	chr9	123528373	123529373	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030692)	promoter-TSS (NM_030692)	-880.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	98.97	154.82	113.77	101.88	109.16	117.35	149.98	138.84	126.15
Merged-chrX-137141885-1	chrX	137141385	137142385	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21559.0	NM_007957	13984.0	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	5.72	1.38	1.85	2.02	0.93	0.0	0.0	3.1	1.25
Merged-chr6-108740725-3	chr6	108740229	108741229	+	782.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-42330.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	9.15	9.68	8.32	21.59	13.06	8.04	7.39	3.54	2.5
Merged-chr2-117195150-1	chr2	117194650	117195650	+	782.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10023.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	21.17	21.66	34.22	24.29	14.46	30.54	22.18	14.15	14.99
Merged-chr14-117690095-2	chr14	117689614	117690614	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	Charlie5|DNA|hAT-Charlie	263733.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	8.01	3.69	3.7	8.1	4.67	1.61	4.22	5.75	1.87
Merged-chr10-79417302-2	chr10	79416806	79417806	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-51652.0	NM_001104537	625029.0	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	13.73	2.3	1.85	16.87	4.2	4.82	5.28	3.54	2.5
Merged-chr5-142630532-2	chr5	142630028	142631028	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178398, intron 1 of 11)	intron (NM_178398, intron 1 of 11)	944.0	NM_178398	74781.0	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	26.89	20.27	15.72	18.22	17.26	16.08	25.35	14.59	16.24
Merged-chr2-43806135-2	chr2	43805622	43806622	+	782.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57298.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	41.19	35.94	33.3	26.31	32.19	36.17	44.36	44.22	26.23
Merged-chr7-90134035-4	chr7	90133570	90134570	+	782.645874	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3857.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	165.9	291.68	136.89	141.69	235.12	167.19	146.81	161.83	88.68
Merged-chr1-93014638-3	chr1	93014147	93015147	+	782.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001110315)	TTS (NM_001110315)	8313.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	5.72	4.61	3.7	2.02	2.8	1.61	1.06	1.33	5.0
Merged-chr4-108348669-3	chr4	108348175	108349175	+	782.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	20523.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	16.59	11.52	17.57	18.89	15.86	26.53	28.52	33.16	12.49
Merged-chr19-21274891-3	chr19	21274388	21275388	+	782.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	intron (NM_009551, intron 1 of 5)	2610.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	117.27	112.89	31.45	187.57	179.14	95.65	106.67	116.29	53.71
Merged-chr9-57917879-1	chr9	57917379	57918379	+	782.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027086, intron 3 of 10)	(TG)n|Simple_repeat|Simple_repeat	6893.0	NM_001122873	69459.0	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	31.46	17.97	26.82	10.8	9.8	8.04	30.63	24.32	4.37
Merged-chr7-38188005-2	chr7	38187489	38188489	+	782.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028166, intron 1 of 3)	intron (NM_028166, intron 1 of 3)	4202.0	NM_028166	72244.0	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	22.31	32.25	63.82	14.17	10.26	11.25	6.34	3.98	3.12
Merged-chr19-32780524-3	chr19	32780035	32781035	+	782.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	22958.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	31.46	51.15	33.3	41.83	43.39	39.39	55.98	50.85	37.47
Merged-chr7-81904361-3	chr7	81903877	81904877	+	782.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013886, intron 2 of 5)	MLT1J|LTR|ERVL-MaLR	30082.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	3.43	4.15	1.85	4.72	1.87	3.22	3.17	4.42	3.75
Merged-chr3-36060302-2	chr3	36059824	36060824	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-5655.0	NM_172678	229211.0	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	4.58	2.3	0.0	8.77	2.33	3.22	3.17	3.98	0.0
Merged-chr14-120243365-2	chr14	120242870	120243870	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32299.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.58	5.53	0.92	3.37	2.33	5.63	8.45	4.86	0.0
Merged-chr1-62244906-1	chr1	62244406	62245406	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 15 of 22)	intron (NM_001081050, intron 15 of 22)	-108797.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	4.58	5.99	7.4	10.8	11.66	6.43	8.45	6.19	6.87
Merged-chr7-104167414-2	chr7	104166909	104167909	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_172905	244180.0	Mm.17149	NM_172905	ENSMUSG00000044265	Olfm5	E030002O03Rik	olfactomedin 5	protein-coding	2.86	2.76	12.02	1.35	2.33	4.82	4.22	0.44	3.75
Merged-chr7-126693440-2	chr7	126692937	126693937	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029420, intron 1 of 5)	B3|SINE|B2	2346.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	11.44	3.23	0.0	4.05	3.27	12.06	7.39	1.77	0.0
Merged-chr12-40575173-1	chr12	40574673	40575673	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	L1MB2|LINE|L1	129120.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.44	7.37	13.87	10.12	2.33	8.84	2.11	3.98	5.62
Merged-chr2-46315455-2	chr2	46314957	46315957	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	618852.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	17.16	17.05	16.65	18.89	8.86	12.06	14.79	15.92	8.74
Merged-chr6-125501441-2	chr6	125500950	125501950	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6690.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	17.16	5.07	3.7	19.57	6.06	16.88	11.62	17.69	7.49
Merged-chr2-132145076-1	chr2	132144576	132145576	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018824)	promoter-TSS (NM_018824)	32.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	27.46	16.13	16.65	29.69	14.0	22.51	29.57	18.13	12.49
Merged-chr15-40047386-2	chr15	40046884	40047884	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155348, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	2196.0	NR_155348	102636079.0	Mm.421381	NR_155348	ENSMUSG00000115142	Gm33251	-	predicted gene, 33251	ncRNA	6.29	4.15	7.4	9.45	11.66	7.23	9.51	10.17	10.62
Merged-chr7-5099973-2	chr7	5099473	5100473	+	782.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16938.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	14.87	16.13	14.8	20.24	14.46	18.49	13.73	15.03	14.99
Merged-chr17-28770157-1	chr17	28769657	28770657	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011950, intron 2 of 11)	CpG-6188	840.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	9.15	0.92	1.85	10.12	1.4	3.22	7.39	3.54	3.75
Merged-chr16-33967436-1	chr16	33966936	33967936	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009471)	promoter-TSS (NM_009471)	-398.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	89.24	99.07	64.75	92.44	87.7	87.61	83.44	74.28	48.09
Merged-chr11-70813196-2	chr11	70812687	70813687	+	782.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045526)	promoter-TSS (NM_001045526)	-626.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	96.11	70.5	123.94	64.77	52.25	71.54	104.56	79.59	63.7
Merged-chr14-54902346-3	chr14	54901854	54902854	+	782.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	8211.0	NM_019402	54196.0	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	13.73	17.51	17.57	38.46	20.06	26.53	28.52	32.72	22.48
Merged-chr11-49088299-4	chr11	49087777	49088777	+	782.474976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008330, intron 1 of 1)	intron (NM_008330, intron 1 of 1)	1260.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	81.8	93.08	82.32	51.95	53.18	59.48	86.61	56.16	52.46
Merged-chr17-84268750-3	chr17	84268263	84269263	+	782.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-80816.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	74.94	56.68	60.12	79.62	51.32	35.37	50.7	64.56	43.09
Merged-chr12-117466125-2	chr12	117465636	117466636	+	782.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50343.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	6.86	9.22	8.32	14.84	8.86	8.84	23.24	31.84	13.74
Merged-chr10-19687948-2	chr10	19687471	19688471	+	782.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24616.0	NM_172786	237313.0	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	14.3	11.06	5.55	10.8	4.2	3.22	7.39	5.31	13.74
Merged-chr17-48931984-3	chr17	48931513	48932513	+	782.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027452)	promoter-TSS (NM_027452)	-569.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	2.86	0.0	3.7	4.72	0.93	1.61	3.17	0.44	2.5
Merged-chr2-35461420-3	chr2	35460930	35461930	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	19.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	26.31	36.4	55.5	37.78	45.72	55.46	25.35	23.43	19.98
Merged-chr9-60181047-3	chr9	60180540	60181540	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040426, intron 7 of 17)	intron (NM_001040426, intron 7 of 17)	-39820.0	NM_172444	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	14.87	14.28	12.02	20.24	18.19	11.25	13.73	8.4	5.0
Merged-chr9-3036442-3	chr9	3035936	3036936	+	782.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	2307.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	41.19	139.16	18.5	68.82	176.34	3.22	103.51	84.01	12.49
Merged-chr4-118425629-3	chr4	118425158	118426158	+	782.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2435.0	NM_001039175	54325.0	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	6.29	7.37	12.95	21.59	16.79	14.47	35.91	28.74	22.48
Merged-chr18-30503974-2	chr18	30503480	30504480	+	782.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231115.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	36.04	50.69	52.72	18.89	12.6	12.86	36.97	42.45	14.36
Merged-chr11-120539175-3	chr11	120538687	120539687	+	782.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008101)	TTS (NM_008101)	8460.0	NM_008101	14527.0	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	10.3	9.22	11.1	14.17	5.6	12.86	14.79	1.77	11.24
Merged-chr7-63824236-1	chr7	63823736	63824736	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-92621.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	5.15	4.15	5.55	3.37	4.67	4.82	2.11	3.98	5.0
Merged-chr7-80346402-1	chr7	80345902	80346902	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026812)	TTS (NM_026812)	3265.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	12.01	8.29	18.5	12.14	13.06	12.86	8.45	4.86	2.5
Merged-chr12-45074347-1	chr12	45073847	45074847	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_144552, exon 1 of 6)	5' UTR (NM_144552, exon 1 of 6)	136.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	2.29	0.92	1.85	0.67	2.33	0.8	0.0	2.21	1.25
Merged-chr7-30760953-3	chr7	30760443	30761443	+	782.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2813.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	7.44	2.3	5.55	4.05	4.2	6.43	5.28	3.1	7.49
Merged-chr9-118678559-2	chr9	118678036	118679036	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 11 of 27)	intron (NM_133721, intron 11 of 27)	-33156.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	10.3	9.68	11.1	11.47	10.26	15.27	21.12	34.49	23.73
Merged-chr3-89729839-1	chr3	89729339	89730339	+	782.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019655)	promoter-TSS (NM_019655)	-879.0	NM_001146296	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	17.16	20.74	19.42	19.57	19.13	27.33	28.52	19.01	21.86
Merged-chrX-167319411-2	chrX	167318898	167319898	+	782.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	intron (NM_001290758, intron 2 of 3)	11173.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	48.62	47.92	33.3	73.54	54.11	46.62	41.19	55.71	40.59
Merged-chr10-58383445-3	chr10	58382953	58383953	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	intron (NM_201242, intron 1 of 9)	-10920.0	NM_001193303	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	30.89	38.71	24.05	23.62	13.53	16.88	22.18	21.67	13.12
Merged-chr13-44532919-3	chr13	44532434	44533434	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	93207.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	4.0	2.76	1.85	5.4	1.4	9.65	2.11	4.42	1.25
Merged-chr17-84354223-3	chr17	84353697	84354697	+	782.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	L1M4c|LINE|L1	112011.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	44.62	49.3	35.15	36.43	29.86	29.74	33.8	32.28	26.85
Merged-chr14-21499668-4	chr14	21499209	21500209	+	782.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205241)	promoter-TSS (NM_001205241)	-61.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	24.03	7.83	23.12	32.39	8.4	27.33	21.12	10.17	5.62
Merged-chr11-118163881-3	chr11	118163372	118164372	+	782.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001112699)	TTS (NM_001112699)	-34653.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	16.02	13.36	9.25	29.01	20.99	26.53	11.62	17.69	8.74
Merged-chr13-80960026-2	chr13	80959522	80960522	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4052.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	9.15	5.99	0.0	11.47	7.0	8.84	7.39	18.13	11.87
Merged-chr11-5009858-2	chr11	5009376	5010376	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	23052.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	32.61	45.62	61.05	45.88	48.98	51.44	28.52	22.11	22.48
Merged-chr3-60559927-1	chr3	60559427	60560427	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	58748.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	6.86	5.07	8.32	16.87	14.93	12.86	16.9	15.92	16.86
Merged-chr10-100868732-1	chr10	100868232	100869232	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	-127097.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	6.86	4.15	1.85	4.05	0.93	4.82	0.0	5.75	5.0
Merged-chr10-20595576-1	chr10	20595076	20596076	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	MER102b|DNA|hAT-Charlie	-47248.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	4.58	6.45	4.62	6.07	3.27	16.08	9.51	1.77	4.37
Merged-chr5-26904520-2	chr5	26904058	26905058	+	782.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198886)	promoter-TSS (NM_001198886)	-220.0	NM_001198886	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	2.86	3.23	0.0	10.8	7.93	4.82	26.4	11.05	16.24
Merged-chr18-38343632-2	chr18	38343138	38344138	+	782.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4645.0	NM_011937	26384.0	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	6.29	4.15	1.85	8.1	6.53	16.08	6.34	4.86	5.62
Merged-chr6-30204562-3	chr6	30204048	30205048	+	782.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	27925.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	5.72	4.15	1.85	2.02	0.93	3.22	7.39	5.31	5.0
Merged-chr9-58899930-4	chr9	58899492	58900492	+	782.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	76480.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	106.4	122.57	64.75	93.11	85.84	59.48	115.12	96.83	48.71
Merged-chr9-72275344-3	chr9	72274832	72275832	+	782.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146224, intron 1 of 21)	CpG	444.0	NM_001311105	235469.0	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	52.06	61.75	52.72	70.17	46.65	43.4	100.34	38.03	33.1
Merged-chr3-100998262-3	chr3	100997752	100998752	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-28589.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	35.47	29.03	42.55	39.13	32.66	52.25	31.69	27.41	20.61
Merged-chr4-144956035-1	chr4	144955535	144956535	+	782.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	62898.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	1.14	4.61	2.77	3.37	5.13	3.22	1.06	0.44	1.25
Merged-chr14-27405750-3	chr14	27405226	27406226	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23108.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	16.59	17.05	22.2	14.84	14.93	11.25	38.02	39.35	24.36
Merged-chr2-128718539-3	chr2	128718061	128719061	+	782.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	19646.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	108.69	137.31	110.07	102.56	70.91	113.33	106.67	141.94	73.07
Merged-chr6-134706668-2	chr6	134706164	134707164	+	782.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	65724.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	40.62	43.77	30.52	29.01	26.12	30.54	34.85	37.14	8.74
Merged-chr3-22090531-2	chr3	22090040	22091040	+	782.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13888.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	62.93	69.58	47.17	45.88	49.92	39.39	67.6	54.39	30.6
Merged-chrX-12589924-2	chrX	12589341	12590341	+	782.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	2082.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	32.61	41.01	31.45	34.41	29.86	13.66	23.24	18.13	23.11
Merged-chr11-107124603-3	chr11	107124124	107125124	+	782.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	7298.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	8.01	5.53	6.47	12.82	7.93	19.29	8.45	3.98	6.87
Merged-chr6-116123450-3	chr6	116122958	116123958	+	782.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	MERVL_2A-int|LTR|ERVL	69916.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	91.53	103.68	37.92	114.7	83.97	57.07	70.76	77.82	31.85
Merged-chr1-9906007-2	chr1	9905510	9906510	+	782.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2628.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	5.72	8.29	12.95	8.77	5.6	8.84	3.17	4.42	9.99
Merged-chr11-61868240-2	chr11	61867722	61868722	+	782.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13130.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	49.2	48.38	23.12	52.63	41.52	40.99	52.81	50.85	17.49
Merged-chr10-12930001-2	chr10	12929528	12930528	+	782.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6901.0	NR_038028	320273.0	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	6.29	5.99	7.4	5.4	2.33	4.02	2.11	1.77	2.5
Merged-chr5-136035083-3	chr5	136034600	136035600	+	782.07782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-3396.0	NM_175309	100647.0	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	7.44	6.45	7.4	20.92	9.33	16.08	19.01	6.63	3.75
Merged-chr2-116980059-3	chr2	116979599	116980599	+	782.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79947.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	22.88	38.25	44.4	24.29	15.39	37.78	27.46	32.28	36.22
Merged-chr11-74476127-3	chr11	74475614	74476614	+	782.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	111443.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	16.02	13.36	11.1	11.47	8.86	16.88	5.28	9.73	6.25
Merged-chr17-71476064-1	chr17	71475564	71476564	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028887)	promoter-TSS (NM_028887)	-721.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	144.16	154.36	135.04	134.94	139.02	134.23	176.38	296.25	138.02
Merged-chr16-43955674-1	chr16	43955174	43956174	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	intron (NM_027801, intron 12 of 15)	23376.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	10.87	9.22	8.32	11.47	8.4	11.25	8.45	11.5	8.74
Merged-chr11-106762291-1	chr11	106761791	106762791	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11065.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	13.73	20.27	33.3	24.29	9.8	27.33	13.73	8.84	14.99
Merged-chrX-136976932-2	chrX	136976425	136977425	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207267)	promoter-TSS (NM_207267)	-51.0	NM_207267	399591.0	Mm.381904	NM_207267	ENSMUSG00000072955	Tmsb15l	4930488E11Rik|Tb15r|Tmsb15b1-Tmsb15b2|Tmsb15r	thymosin beta 15b like	protein-coding	1.14	0.0	1.85	4.72	2.8	4.02	1.06	2.21	1.25
Merged-chr4-62330072-1	chr4	62329572	62330572	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 12 of 27)	intron (NM_001355385, intron 12 of 27)	30524.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	76.66	106.9	30.52	76.24	98.9	66.71	81.33	129.11	54.33
Merged-chr6-113039801-1	chr6	113039301	113040301	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR1B|LTR|ERV1	-6501.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	14.3	6.91	12.02	10.8	6.06	23.31	19.01	12.82	11.87
Merged-chr17-78374857-1	chr17	78374357	78375357	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_015800, exon 17 of 17)	3' UTR (NM_015800, exon 17 of 17)	43295.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	17.73	19.35	25.9	20.24	16.79	28.94	19.01	8.4	11.24
Merged-chr4-13756584-1	chr4	13756084	13757084	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111027, intron 1 of 11)	intron (NM_001111027, intron 1 of 11)	5287.0	NM_001111027	12395.0	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	3.43	4.15	3.7	4.05	6.06	1.61	3.17	4.42	1.25
Merged-chr9-41156884-1	chr9	41156384	41157384	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	CpG	1178.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	28.6	25.8	41.62	37.11	35.45	28.94	71.82	44.22	29.35
Merged-chr4-12538762-1	chr4	12538262	12539262	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-366747.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	2.86	1.38	0.0	4.72	2.8	0.0	2.11	2.21	2.5
Merged-chr19-6274426-1	chr19	6273926	6274926	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2470.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	40.04	31.33	23.12	39.13	20.99	46.62	17.96	7.07	25.61
Merged-chr16-21998185-1	chr16	21997685	21998685	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2643.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	5.15	7.37	1.85	5.4	5.13	9.65	5.28	2.21	8.74
Merged-chr8-33517284-2	chr8	33516806	33517806	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	32995.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.57	0.92	1.85	8.1	1.87	0.0	3.17	1.33	6.25
Merged-chr19-56400411-2	chr19	56399925	56400925	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007611, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3296.0	NM_007611	12369.0	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	3.43	4.61	3.7	2.7	1.87	3.22	5.28	1.77	8.12
Merged-chr3-146465010-1	chr3	146464510	146465510	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001293672, exon 7 of 7)	3' UTR (NM_001293672, exon 7 of 7)	14543.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	16.02	10.14	16.65	15.52	20.53	6.43	11.62	6.63	8.12
Merged-chr3-79145824-2	chr3	79145334	79146334	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310536)	promoter-TSS (NM_001310536)	41.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	6.86	4.61	7.4	11.47	9.8	3.22	6.34	7.07	7.49
Merged-chr1-75400932-1	chr1	75400432	75401432	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173477, intron 1 of 4)	intron (NM_001173477, intron 1 of 4)	847.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	10.87	11.98	5.55	14.84	16.79	15.27	22.18	17.24	10.62
Merged-chr7-62420150-1	chr7	62419650	62420650	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011746)	promoter-TSS (NM_011746)	-11.0	NM_011746	22652.0	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	2.86	2.76	0.0	4.72	2.33	3.22	3.17	0.44	0.62
Merged-chr13-8680663-2	chr13	8680167	8681167	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	190377.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	2.29	3.23	6.47	17.54	14.0	20.9	3.17	2.65	6.25
Merged-chr17-35197309-2	chr17	35196807	35197807	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2335.0	NR_105939	102465588.0		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	18.31	7.83	8.32	5.4	3.73	3.22	1.06	2.21	0.0
Merged-chr14-36962608-3	chr14	36962122	36963122	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	6142.0	NM_027045	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	16.02	11.98	0.0	13.49	10.73	6.43	12.67	10.61	6.25
Merged-chr7-88344121-1	chr7	88343621	88344621	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66036.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.58	3.69	4.62	2.02	2.33	6.43	3.17	0.0	1.25
Merged-chr3-65930777-1	chr3	65930277	65931277	+	782.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	27472.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	19.45	16.59	6.47	18.22	11.66	8.84	19.01	11.05	14.36
Merged-chr6-39301685-1	chr6	39301185	39302185	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75750.0	NR_155076	72144.0	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	4.0	3.23	3.7	4.72	1.87	1.61	3.17	5.31	4.37
Merged-chr19-45664183-1	chr19	45663683	45664683	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3990.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	8.01	9.22	10.17	8.1	4.2	4.02	10.56	11.94	10.62
Merged-chrX-10485090-1	chrX	10484590	10485590	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019634)	promoter-TSS (NM_019634)	-26.0	NM_019634	21912.0	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	3.43	0.0	0.0	4.05	2.8	1.61	2.11	0.0	1.25
Merged-chr5-123907828-1	chr5	123907328	123908328	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026603, intron 1 of 7)	intron (NM_026603, intron 1 of 7)	553.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	108.69	111.97	82.32	116.05	100.77	90.02	149.98	110.54	60.58
Merged-chr9-97534563-2	chr9	97534076	97535076	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022319, intron 6 of 17)	intron (NM_022319, intron 6 of 17)	-164618.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.57	0.46	0.0	3.37	0.47	3.22	1.06	0.44	2.5
Merged-chr3-65990766-3	chr3	65990258	65991258	+	782.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-32509.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	14.87	11.98	11.1	11.47	9.33	12.86	11.62	11.94	5.0
Merged-chr1-88279463-1	chr1	88278963	88279963	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1884.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	13.16	10.6	23.12	14.17	10.26	13.66	13.73	11.05	23.73
Merged-chr9-63132267-1	chr9	63131767	63132767	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14713.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	79.52	65.89	48.1	101.21	119.43	82.79	84.49	56.6	40.59
Merged-chr15-61649936-1	chr15	61649436	61650436	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	124515.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	3.43	5.07	3.7	4.05	4.2	7.23	5.28	3.1	3.75
Merged-chr3-131218473-1	chr3	131217973	131218973	+	782.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276403, intron 11 of 11)	intron (NM_001276403, intron 11 of 11)	53628.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	3.43	2.3	0.0	3.37	4.67	1.61	3.17	0.88	3.75
Merged-chr11-100713906-3	chr11	100713459	100714459	+	781.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029307, exon 1 of 1)	exon (NM_029307, exon 1 of 1)	109.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	25.17	27.19	40.7	24.96	28.46	49.03	47.53	38.47	29.98
Merged-chr16-33923158-2	chr16	33922654	33923654	+	781.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	43884.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	184.77	199.06	130.42	142.37	188.47	177.64	179.55	261.32	107.42
Merged-chr9-66361929-3	chr9	66361416	66362416	+	781.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	RSINE1|SINE|B4	11466.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	51.48	47.0	28.67	66.12	46.18	20.09	49.64	44.22	30.6
Merged-chr11-8424409-3	chr11	8423882	8424882	+	781.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240153.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.86	0.46	2.77	4.72	1.4	4.02	1.06	0.44	1.25
Merged-chr4-44065882-2	chr4	44065382	44066382	+	781.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190414, intron 2 of 11)	intron (NM_001190414, intron 2 of 11)	6835.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	10.3	3.69	9.25	8.1	6.06	1.61	3.17	2.65	3.75
Merged-chr10-95279038-2	chr10	95278534	95279534	+	781.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	MTD|LTR|ERVL-MaLR	44675.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	63.5	78.33	58.27	58.7	55.05	80.38	72.88	74.73	59.33
Merged-chr1-152573874-2	chr1	152573372	152574372	+	781.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	51345.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	48.05	61.75	46.25	72.19	53.65	60.28	71.82	52.62	35.6
Merged-chr3-121721927-3	chr3	121721502	121722502	+	781.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1535.0	NM_010171	14066.0	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	11.44	15.67	1.85	10.8	3.73	0.0	19.01	15.03	2.5
Merged-chr9-119335079-3	chr9	119334609	119335609	+	781.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010851)	TTS (NM_010851)	4931.0	NM_010851	17874.0	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	31.46	29.03	24.97	26.31	17.26	12.86	31.69	31.84	33.72
Merged-chr7-101884331-3	chr7	101883835	101884835	+	781.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291353, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	-1525.0	NM_001291352	75430.0	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	14.87	17.97	18.5	13.49	13.06	23.31	15.84	12.82	13.74
Merged-chr8-83159125-2	chr8	83158626	83159626	+	781.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6226.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	13.16	14.28	18.5	33.74	16.33	11.25	28.52	15.03	16.86
Merged-chr9-37086323-2	chr9	37085825	37086825	+	781.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	Lx8b|LINE|L1	60997.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	6.86	10.6	9.25	4.05	8.4	4.82	1.06	0.44	3.75
Merged-chr12-85704770-3	chr12	85704270	85705270	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	18050.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	186.49	156.67	192.39	171.38	125.49	162.37	160.54	176.42	111.17
Merged-chr4-149728996-3	chr4	149728512	149729512	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284270, intron 4 of 10)	intron (NM_001284270, intron 4 of 10)	8758.0	NM_001284273	230917.0	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	13.16	1.38	5.55	10.8	9.8	18.49	11.62	9.29	6.25
Merged-chr2-170240278-3	chr2	170239785	170240785	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97610.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	14.3	10.6	22.2	12.14	14.0	27.33	15.84	23.43	23.73
Merged-chr17-34034306-3	chr17	34033812	34034812	+	781.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205214, intron 4 of 9)	intron (NM_001205214, intron 4 of 9)	1962.0	NM_001205215	20182.0	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	9.72	4.61	9.25	4.05	4.2	6.43	7.39	6.63	5.62
Merged-chr19-55383430-1	chr19	55382930	55383930	+	781.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360432, intron 4 of 7)	intron (NM_001360432, intron 4 of 7)	67373.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	13.16	10.6	2.77	38.46	31.26	15.27	11.62	8.4	2.5
Merged-chr4-53157463-3	chr4	53156945	53157945	+	781.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	2450.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	148.73	147.45	87.87	126.17	170.28	145.49	175.33	189.25	98.68
Merged-chr16-36692642-3	chr16	36692127	36693127	+	781.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1351.0	NM_001285788	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	6.86	2.3	5.55	5.4	4.2	1.61	2.11	3.1	5.0
Merged-chr6-149261106-3	chr6	149260615	149261615	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48299.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	5.15	5.53	7.4	4.05	5.13	3.22	5.28	7.52	1.25
Merged-chr4-145196786-2	chr4	145196289	145197289	+	781.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1784.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	9.72	8.29	9.25	5.4	2.8	12.86	7.39	4.42	8.12
Merged-chr6-13605458-2	chr6	13604973	13605973	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028990, intron 1 of 4)	intron (NM_028990, intron 1 of 4)	2625.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	57.21	76.95	33.3	43.18	37.32	62.7	40.14	40.24	33.1
Merged-chr11-49253227-2	chr11	49252734	49253734	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110148, intron 3 of 3)	MLT1G3|LTR|ERVL-MaLR	2682.0	NM_001110150	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	19.45	23.96	40.7	19.57	20.53	18.49	28.52	19.46	23.73
Merged-chr17-35829857-4	chr17	35829281	35830281	+	781.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	6424.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	11.44	2.76	1.85	12.82	2.8	4.02	3.17	0.88	6.25
Merged-chr17-87286265-2	chr17	87285759	87286759	+	781.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	3373.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	9.15	9.22	3.7	7.42	10.73	9.65	8.45	4.86	2.5
Merged-chr2-145804776-3	chr2	145804280	145805280	+	781.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	L1MB3|LINE|L1	18664.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	32.04	34.1	34.22	39.81	33.12	39.39	17.96	29.18	25.61
Merged-chr12-77052930-1	chr12	77052430	77053430	+	781.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90682.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.0	1.38	0.0	1.35	0.93	4.02	0.0	1.77	0.0
Merged-chr4-148945853-3	chr4	148945352	148946352	+	781.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027195)	TTS (NM_027195)	6470.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	17.16	17.51	25.9	26.99	23.33	30.54	6.34	5.75	7.49
Merged-chr12-112633892-1	chr12	112633392	112634392	+	781.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 5 of 12)	intron (NM_007421, intron 5 of 12)	-10936.0	NM_001161737	30954.0	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	82.38	71.42	78.62	89.74	69.98	93.24	34.85	53.94	31.23
Merged-chr19-11803223-3	chr19	11802709	11803709	+	781.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286543, intron 2 of 11)	B3|SINE|B2	16194.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	45.76	50.69	57.35	41.83	47.12	30.54	38.02	32.72	39.35
Merged-chr15-74929040-1	chr15	74928540	74929540	+	781.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26011.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	41.76	58.06	36.07	22.27	20.53	15.27	183.78	178.19	93.68
Merged-chr13-43774365-2	chr13	43773872	43774872	+	781.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10740.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.01	4.61	1.85	2.7	4.67	0.0	6.34	3.98	6.87
Merged-chr11-96888986-2	chr11	96888494	96889494	+	781.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27520.0	NM_001308183	80280.0	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	49.2	42.39	40.7	64.77	75.11	81.18	31.69	41.12	36.22
Merged-chr15-89140540-2	chr15	89139994	89140994	+	781.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013871, exon 1 of 12)	5' UTR (NM_013871, exon 1 of 12)	209.0	NM_013871	29857.0	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	7.44	1.84	3.7	5.4	2.8	6.43	2.11	0.44	3.75
Merged-chr10-117307230-2	chr10	117306728	117307728	+	781.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14360.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	8.58	4.61	1.85	2.7	3.73	5.63	5.28	4.86	7.49
Merged-chr10-127188726-2	chr10	127188200	127189200	+	781.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	72.0	NM_001358557	52666.0	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	1.72	2.76	3.7	6.07	1.87	1.61	5.28	1.33	0.0
Merged-chr13-34651091-2	chr13	34650583	34651583	+	781.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	1598.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	62.35	60.82	29.6	97.83	64.84	78.77	48.58	37.14	25.61
Merged-chr3-8594064-3	chr3	8593554	8594554	+	781.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33997.0	NR_153352	102635065.0		NR_153352	ENSMUSG00000104102	Gm32496	-	predicted gene, 32496	ncRNA	18.31	7.37	11.1	9.45	8.4	8.04	7.39	2.65	3.12
Merged-chr2-160729955-3	chr2	160729458	160730458	+	781.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1352.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	3.43	2.76	1.85	5.4	5.13	1.61	5.28	5.31	6.87
Merged-chr2-93199070-3	chr2	93198575	93199575	+	781.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025246, intron 6 of 7)	intron (NM_001025246, intron 6 of 7)	11527.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	5.15	4.15	1.85	6.07	0.0	3.22	4.22	0.44	2.5
Merged-chr16-36784950-1	chr16	36784450	36785450	+	781.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021301)	promoter-TSS (NM_021301)	12.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	53.77	87.55	14.8	109.3	167.94	28.94	11.62	12.38	5.0
Merged-chr16-91885226-2	chr16	91884712	91885712	+	781.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	46418.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	11.44	5.53	1.85	14.17	11.2	13.66	2.11	0.88	6.25
Merged-chr19-5801945-5	chr19	5801389	5802389	+	781.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	783.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	188.21	182.01	137.82	180.82	184.74	138.25	229.19	256.9	119.28
Merged-chr10-70097972-2	chr10	70097469	70098469	+	781.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111121, intron 1 of 8)	CpG	848.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	24.6	7.83	22.2	21.59	9.33	20.9	22.18	18.57	15.61
Merged-chr7-31116803-2	chr7	31116307	31117307	+	781.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011322, exon 6 of 6)	3' UTR (NM_011322, exon 6 of 6)	-1481.0	NM_001110252	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	77.8	73.73	102.67	74.89	55.05	95.65	73.93	61.9	69.95
Merged-chr19-53939555-3	chr19	53939046	53940046	+	781.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195348, intron 2 of 3)	intron (NM_001195348, intron 2 of 3)	-4760.0	NM_001168505	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	8.58	6.45	5.55	8.77	7.0	11.25	9.51	7.96	5.0
Merged-chr10-8866369-1	chr10	8865869	8866869	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	19701.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	16.59	21.2	26.82	26.99	14.93	35.37	17.96	13.27	15.61
Merged-chr13-111944997-2	chr13	111944514	111945514	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	77078.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	26.31	25.8	8.32	44.53	29.39	20.09	12.67	20.34	16.86
Merged-chr18-9212200-2	chr18	9211688	9212688	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008058)	promoter-TSS (NM_008058)	-668.0	NM_008058	14370.0	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	5.72	7.83	9.25	12.82	14.0	12.86	9.51	1.33	1.87
Merged-chr15-6360385-1	chr15	6359885	6360885	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-26363.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	6.29	8.29	18.5	8.77	6.53	14.47	6.34	3.54	7.49
Merged-chr2-145720915-3	chr2	145720426	145721426	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	19731.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	8.01	11.98	3.7	8.77	4.67	0.8	11.62	5.75	5.0
Merged-chrX-143348548-2	chrX	143348050	143349050	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 4 of 11)	intron (NM_001358592, intron 4 of 11)	45712.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	4.58	5.99	7.4	2.02	3.73	4.02	6.34	3.54	8.74
Merged-chr10-80033712-1	chr10	80033212	80034212	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	5947.0	NM_025554	66420.0	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	50.91	41.93	62.9	91.09	77.91	68.32	72.88	65.0	36.22
Merged-chrY-90800740-1	chrY	90800240	90801240	+	781.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	15298.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.0	1.84	0.0	6.75	1.4	9.65	17.96	10.61	18.74
Merged-chrX-169089125-1	chrX	169088625	169089625	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 1 of 14)	intron (NR_109847, intron 1 of 14)	-23753.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	9.15	5.53	1.85	4.05	3.27	11.25	3.17	5.75	6.25
Merged-chr1-165710100-1	chr1	165709600	165710600	+	781.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2006.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	10.3	6.91	7.4	10.8	5.6	4.82	9.51	9.29	7.49
Merged-chr2-167623131-1	chr2	167622631	167623631	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023230, intron 1 of 3)	intron (NM_023230, intron 1 of 3)	8874.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	10.3	9.22	10.17	10.8	6.53	4.82	5.28	6.63	3.12
Merged-chrX-170005297-1	chrX	170004797	170005797	+	781.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-26380.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	2.29	1.84	1.85	4.05	4.2	3.22	7.39	1.77	18.74
Merged-chr2-152396351-2	chr2	152395852	152396852	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011438, exon 1 of 1)	3' UTR (NM_011438, exon 1 of 1)	1694.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	8.01	10.14	3.7	2.02	0.47	1.61	0.0	1.77	1.25
Merged-chr7-44055688-2	chr7	44055187	44056187	+	781.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020268, exon 3 of 5)	exon (NM_020268, exon 3 of 5)	3397.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	16.59	9.68	1.85	8.77	3.73	8.84	1.06	0.0	5.0
Merged-chr12-110885933-3	chr12	110885438	110886438	+	781.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026048, intron 1 of 4)	B1F1|SINE|Alu	3207.0	NM_027223	67236.0	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	15.45	11.52	15.72	20.92	7.0	12.86	10.56	6.63	21.86
Merged-chr13-97510991-2	chr13	97510489	97511489	+	781.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28288.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	11.44	3.23	0.0	11.47	10.73	9.65	7.39	3.54	8.12
Merged-chr11-114933780-3	chr11	114933258	114934258	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199221, intron 1 of 3)	intron (NM_199221, intron 1 of 3)	628.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	68.07	88.47	120.24	115.38	102.63	123.78	104.56	124.69	59.33
Merged-chr11-104001686-3	chr11	104001180	104002180	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34809.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	42.33	49.76	35.15	43.18	47.12	23.31	30.63	32.28	20.61
Merged-chr10-128743920-3	chr10	128743431	128744431	+	781.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_016811, exon 1 of 24)	5' UTR (NM_016811, exon 1 of 24)	145.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	29.75	43.31	21.27	46.56	45.25	65.11	25.35	20.34	8.74
Merged-chr14-19745993-2	chr14	19745497	19746497	+	781.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5260.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.15	7.83	0.0	6.75	5.6	4.82	6.34	4.42	5.0
Merged-chr5-64102748-2	chr5	64102248	64103248	+	781.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025700, intron 3 of 13)	ID|SINE|ID	9809.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	10.87	6.45	3.7	8.1	5.13	12.86	6.34	3.54	10.62
Merged-chr7-116040314-2	chr7	116039798	116040798	+	781.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_001025559	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	1.72	0.92	0.0	4.72	0.93	3.22	1.06	0.88	2.5
Merged-chr2-121442667-3	chr2	121442251	121443251	+	781.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145973)	promoter-TSS (NM_145973)	-150.0	NM_145973	269344.0	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	6.86	4.61	5.55	1.35	2.33	9.65	8.45	8.4	0.0
Merged-chr18-74283037-2	chr18	74282528	74283528	+	781.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029424)	promoter-TSS (NR_029424)	-72.0	NM_028948	74453.0	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.0	4.61	0.92	1.35	3.73	5.63	2.11	1.33	3.75
Merged-chr18-60748692-3	chr18	60748180	60749180	+	781.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008306)	promoter-TSS (NM_008306)	-15.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	109.26	59.44	133.19	120.1	51.78	97.26	146.81	48.64	40.59
Merged-chr7-35127935-2	chr7	35127427	35128427	+	781.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	8634.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	11.44	4.61	1.85	9.45	7.93	8.04	3.17	3.54	9.99
Merged-chr8-113632827-3	chr8	113632329	113633329	+	781.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2757.0	NM_001048143	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	1.72	1.84	1.85	0.67	5.13	1.61	3.17	1.33	5.0
Merged-chr9-115733343-3	chr9	115732858	115733858	+	781.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-176097.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	4.58	3.69	4.62	4.72	1.4	1.61	8.45	6.63	7.49
Merged-chr8-105516133-3	chr8	105515631	105516631	+	781.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2615.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	2.86	4.15	11.1	6.75	4.2	1.61	3.17	0.0	1.25
Merged-chr2-59522245-3	chr2	59521742	59522742	+	781.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37589.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	5.15	5.07	0.0	11.47	7.46	4.82	9.51	2.21	3.75
Merged-chr9-108474786-2	chr9	108474283	108475283	+	781.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5079.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	3.43	1.84	1.85	5.4	6.53	3.22	1.06	2.21	6.25
Merged-chr14-122633316-3	chr14	122632797	122633797	+	781.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 7 of 24)	intron (NR_153443, intron 7 of 24)	98969.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	15.45	16.59	37.0	35.76	27.99	36.97	48.58	34.93	29.98
Merged-chrX-20770991-5	chrX	20770486	20771486	+	781.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	67077.0	NM_145628	236733.0	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	8.01	6.91	1.85	14.17	3.73	14.47	4.22	3.98	5.0
Merged-chr7-121073181-3	chr7	121072652	121073652	+	781.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	B4|SINE|B4	1378.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	85.24	123.03	87.87	82.32	113.83	79.58	108.79	103.02	83.06
Merged-chr14-50971044-2	chr14	50970535	50971535	+	781.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	14894.0	NM_001123371	667034.0	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	9.72	4.15	5.55	7.42	5.13	6.43	4.22	4.42	12.49
Merged-chr1-171564494-3	chr1	171564001	171565001	+	781.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	MTC-int|LTR|ERVL-MaLR	5308.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	13.73	10.6	11.1	12.14	13.06	8.04	8.45	5.75	5.0
Merged-chr7-4776975-2	chr7	4776471	4777471	+	781.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290423, intron 1 of 4)	CpG	1170.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	4.0	2.76	1.85	3.37	0.0	5.63	6.34	2.21	7.49
Merged-chr5-144267793-2	chr5	144267289	144268289	+	781.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-9272.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	10.87	5.53	4.62	11.47	6.06	11.25	5.28	1.33	5.0
Merged-chr14-54713078-3	chr14	54712630	54713630	+	781.1611330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-956.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	12.59	21.2	24.97	16.19	15.39	20.9	24.29	35.37	12.49
Merged-chr13-65226437-3	chr13	65225954	65226954	+	781.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-20738.0	NM_175290	97895.0	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.57	2.76	0.0	0.67	1.4	0.0	8.45	2.65	6.87
Merged-chrX-100775562-3	chrX	100775053	100776053	+	781.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177779, intron 1 of 13)	intron (NM_001177779, intron 1 of 13)	1058.0	NM_001177779	53310.0	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs large MAGUK scaffold protein 3	protein-coding	1.72	0.92	1.85	5.4	0.47	4.82	5.28	0.44	1.25
Merged-chr4-145096976-2	chr4	145096476	145097476	+	781.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 42 of 69)	intron (NM_001276465, intron 42 of 69)	93690.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	12.01	14.28	29.6	26.99	21.93	35.37	14.79	13.27	16.24
Merged-chr10-95557450-3	chr10	95556979	95557979	+	781.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358996, intron 1 of 4)	B2_Mm2|SINE|B2	1842.0	NR_037212	100526463.0		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	2.29	2.76	10.17	6.75	6.06	3.22	5.28	1.77	1.25
Merged-chr8-122678660-3	chr8	122678089	122679089	+	781.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177289)	promoter-TSS (NM_177289)	-414.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	5.15	1.38	0.0	4.72	0.0	3.22	2.11	1.33	6.25
Merged-chr12-91763984-2	chr12	91763464	91764464	+	781.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	B1_Mur3|SINE|Alu	22472.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	146.45	137.31	85.1	152.49	134.35	139.86	192.23	172.89	122.41
Merged-chr6-37430088-2	chr6	37429603	37430603	+	781.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	12045.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	20.59	11.98	9.25	14.84	12.13	5.63	14.79	15.48	6.87
Merged-chr9-21969462-3	chr9	21968968	21969968	+	781.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5892.0	NM_010149	13857.0	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	8.01	4.15	13.87	2.7	6.06	2.41	4.22	2.21	8.12
Merged-chr7-145050900-2	chr7	145050405	145051405	+	781.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110980.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.58	3.69	6.47	6.75	5.6	5.63	9.51	3.98	1.25
Merged-chr7-73593034-3	chr7	73592510	73593510	+	781.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34615.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	53.77	56.68	47.17	43.86	49.45	49.83	61.26	74.28	53.08
Merged-chr9-114691191-2	chr9	114690684	114691684	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	2353.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	12.01	11.98	1.85	12.14	18.19	4.82	15.84	10.61	3.75
Merged-chr11-94069656-1	chr11	94069156	94070156	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025428, intron 4 of 26)	intron (NM_001025428, intron 4 of 26)	25451.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.29	2.3	15.72	43.18	22.39	25.72	35.91	39.8	24.36
Merged-chr1-16658975-1	chr1	16658475	16659475	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037998, exon 1 of 4)	non-coding (NR_037998, exon 1 of 4)	1423.0	NR_037998	329101.0	Mm.406049	NR_037998	ENSMUSG00000097744	D030040B21Rik	D030040B21	RIKEN cDNA D030040B21 gene	ncRNA	65.21	74.65	58.27	45.21	54.11	61.89	34.85	42.45	44.97
Merged-chr9-113772143-1	chr9	113771643	113772643	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114347, intron 5 of 39)	intron (NM_001114347, intron 5 of 39)	-21187.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	31.46	39.17	40.7	25.64	19.59	22.51	34.85	25.2	20.61
Merged-chr6-116460145-2	chr6	116459650	116460650	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1028.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	12.59	10.14	9.25	8.77	7.46	9.65	2.11	3.98	4.37
Merged-chr7-105641920-1	chr7	105641420	105642420	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001360053)	TTS (NM_001360053)	1475.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	33.75	49.3	50.87	33.74	36.85	48.23	36.97	34.05	31.23
Merged-chr9-122861023-1	chr9	122860523	122861523	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359935, intron 2 of 6)	intron (NM_001359935, intron 2 of 6)	4983.0	NM_001359935	235682.0	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	3.43	5.07	1.85	4.05	1.4	4.82	14.79	7.96	9.99
Merged-chr12-34692544-1	chr12	34692044	34693044	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-163655.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	18.88	23.96	22.2	9.45	16.79	19.29	11.62	4.86	16.24
Merged-chr13-91221671-1	chr13	91221171	91222171	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 1 of 7)	intron (NM_025770, intron 1 of 7)	2316.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	7.44	10.6	7.4	11.47	6.06	4.02	11.62	3.98	2.5
Merged-chr6-46143313-1	chr6	46142813	46143813	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	intron (NM_001004357, intron 8 of 23)	1083252.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	9.72	9.68	14.8	8.77	6.06	18.49	3.17	3.54	9.99
Merged-chr2-18047538-2	chr2	18047037	18048037	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	912.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	5.72	2.76	3.7	7.42	1.87	1.61	1.06	2.21	5.62
Merged-chr13-112801531-1	chr13	112801031	112802031	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008903, intron 1 of 5)	intron (NM_008903, intron 1 of 5)	754.0	NM_008247	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	14.87	13.82	9.25	17.54	22.39	27.33	35.91	19.46	14.36
Merged-chr1-170796650-1	chr1	170796150	170797150	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 10 of 15)	intron (NM_001081304, intron 10 of 15)	71121.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	32.61	38.25	29.6	46.56	28.92	49.03	24.29	30.51	38.72
Merged-chr5-74016977-1	chr5	74016477	74017477	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177561, intron 4 of 8)	intron (NM_177561, intron 4 of 8)	51434.0	NM_177561	69727.0	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	6.29	4.15	1.85	4.72	1.87	0.0	8.45	2.65	5.0
Merged-chr5-108695026-2	chr5	108694523	108695523	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164259, exon 2 of 6)	5' UTR (NM_001164259, exon 2 of 6)	794.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	8.58	2.3	3.7	18.22	3.73	8.84	6.34	1.33	0.0
Merged-chr15-50403963-1	chr15	50403463	50404463	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	485086.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.86	4.61	0.0	2.7	5.6	1.61	2.11	1.77	0.0
Merged-chr3-15331653-2	chr3	15331154	15332154	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001076679, intron 1 of 2)	intron (NM_001076679, intron 1 of 2)	648.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.72	11.06	14.8	12.14	18.19	12.86	9.51	10.17	9.37
Merged-chr4-128698391-1	chr4	128697891	128698891	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9653.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	26.89	35.02	51.8	38.46	22.86	32.15	35.91	16.36	28.1
Merged-chr15-9455385-2	chr15	9454878	9455878	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029341, intron 1 of 4)	intron (NM_029341, intron 1 of 4)	19350.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	4.0	2.76	3.7	6.75	3.27	5.63	1.06	6.63	3.75
Merged-chr13-14115436-1	chr13	14114936	14115936	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194262, intron 2 of 23)	RMER16|LTR|ERVK	51652.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	2.29	0.92	3.7	6.07	7.0	6.43	9.51	5.75	5.0
Merged-chr5-22519925-1	chr5	22519425	22520425	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011959, intron 11 of 13)	intron (NM_011959, intron 11 of 13)	9105.0	NR_004442	100042049.0	Mm.21724	NR_004442		Gm15421	-	ribosomal protein L22 like 1 pseudogene	pseudo	2.86	8.29	3.7	4.05	10.73	7.23	6.34	2.65	6.25
Merged-chr14-66242472-1	chr14	66241972	66242972	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28648.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	75.51	89.85	109.14	63.42	54.58	72.34	85.55	100.37	64.95
Merged-chr9-83574858-1	chr9	83574358	83575358	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	MTC|LTR|ERVL-MaLR	26520.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	21.74	34.1	16.65	43.18	48.52	33.76	21.12	25.2	8.12
Merged-chr11-59306949-2	chr11	59306430	59307430	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139298)	promoter-TSS (NM_139298)	0.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	7.44	1.38	0.0	1.35	1.87	0.0	2.11	1.33	2.5
Merged-chr17-34366662-1	chr17	34366162	34367162	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 8 of 8)	intron (NM_079835, intron 8 of 8)	-10470.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	18.31	18.89	12.95	4.05	2.8	0.0	13.73	4.86	6.87
Merged-chr6-108611854-2	chr6	108611349	108612349	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040757, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	11318.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	5.72	5.53	9.25	6.75	6.06	0.0	1.06	4.86	3.75
Merged-chr11-46848950-2	chr11	46848422	46849422	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38123.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	45.19	61.28	69.37	58.03	43.39	57.87	22.18	11.94	9.99
Merged-chr1-35951265-1	chr1	35950765	35951765	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117135.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	4.0	3.69	3.7	1.35	3.27	3.22	6.34	1.33	1.25
Merged-chr9-31857852-1	chr9	31857352	31858352	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013800, intron 2 of 3)	intron (NM_013800, intron 2 of 3)	55433.0	NM_013800	12023.0	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	2.29	0.92	2.77	4.05	0.47	0.8	4.22	1.33	1.25
Merged-chr3-96488198-1	chr3	96487698	96488698	+	781.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-35892.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.57	1.84	0.0	2.02	3.27	2.41	117.24	167.58	86.81
Merged-chr15-99449494-2	chr15	99448974	99449974	+	781.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	intron (NM_001001884, intron 1 of 12)	8274.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	8.58	2.76	14.8	8.77	10.73	11.25	9.51	13.27	12.49
Merged-chr5-103628707-1	chr5	103628207	103629207	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029415, intron 1 of 5)	intron (NM_029415, intron 1 of 5)	696.0	NM_029415	75750.0	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	10.3	9.68	5.55	18.22	7.0	13.66	5.28	1.33	12.49
Merged-chr15-80800902-1	chr15	80800402	80801402	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	intron (NM_177124, intron 1 of 21)	2292.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	41.76	35.48	34.22	16.19	23.33	16.88	44.36	28.74	19.98
Merged-chr8-39610487-1	chr8	39609987	39610987	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 7 of 9)	L1MC2|LINE|L1	32191.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	12.01	9.22	15.72	6.75	11.66	14.47	12.67	8.4	19.36
Merged-chr1-57429066-1	chr1	57428566	57429566	+	781.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22392.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	1.72	2.76	1.85	6.75	3.27	4.82	3.17	0.44	3.12
Merged-chr13-49308422-3	chr13	49307940	49308940	+	780.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	768.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	210.52	245.6	124.87	204.44	206.2	187.28	236.59	305.1	164.25
Merged-chr12-112146398-3	chr12	112145833	112146833	+	780.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001097621, exon 1 of 16)	5' UTR (NM_001097621, exon 1 of 16)	125.0	NM_001097621	668303.0	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	4.58	1.84	2.77	1.35	1.87	4.82	0.0	4.86	3.75
Merged-chr1-152560977-3	chr1	152560478	152561478	+	780.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 4 of 17)	intron (NM_016846, intron 4 of 17)	64239.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	54.35	30.41	34.22	34.41	23.33	24.92	30.63	25.2	36.22
Merged-chr5-146758117-3	chr5	146757621	146758621	+	780.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 3 of 8)	intron (NM_011669, intron 3 of 8)	36835.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	17.16	26.73	23.12	35.09	23.33	36.97	41.19	55.71	24.98
Merged-chr6-140489728-2	chr6	140489222	140490222	+	780.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	65623.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	4.0	3.69	10.17	2.7	1.4	9.65	2.11	2.65	1.25
Merged-chr18-23197437-2	chr18	23196951	23197951	+	780.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20145.0	NR_110491	665797.0	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	9.72	2.76	0.0	3.37	5.13	7.23	4.22	3.54	2.5
Merged-chr2-165888993-3	chr2	165888503	165889503	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4165.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	37.18	33.18	37.0	41.83	24.72	32.15	40.14	40.24	26.23
Merged-chr11-78359710-3	chr11	78359183	78360183	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	12973.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	17.16	7.83	18.5	18.22	16.33	16.08	12.67	11.94	7.49
Merged-chr10-21670440-2	chr10	21669944	21670944	+	780.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20401.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	13.73	24.88	41.62	34.41	26.59	40.19	35.91	40.68	23.11
Merged-chr8-68278485-3	chr8	68277990	68278990	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	1962.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	1.72	4.61	1.85	6.75	2.8	2.41	3.17	1.77	0.0
Merged-chr5-36463026-3	chr5	36462557	36463557	+	780.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126490, intron 1 of 1)	intron (NR_126490, intron 1 of 1)	1797.0	NR_126490	76710.0	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	7.44	3.69	5.55	6.75	3.27	8.84	7.39	5.75	3.12
Merged-chr17-66219931-3	chr17	66219445	66220445	+	780.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96425.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	33.18	39.17	35.15	42.51	55.05	42.6	71.82	56.16	17.49
Merged-chr1-165211012-3	chr1	165210509	165211509	+	780.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-16571.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	5.72	8.29	1.85	9.45	2.8	1.61	8.45	8.84	2.5
Merged-chr19-55792655-2	chr19	55792155	55793155	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	50845.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	34.9	29.03	24.05	31.71	18.19	25.72	30.63	32.28	23.73
Merged-chr1-36070620-2	chr1	36070131	36071131	+	780.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	2231.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	78.94	57.6	46.25	92.44	82.11	112.53	100.34	81.36	58.08
Merged-chr3-98027578-2	chr3	98027091	98028091	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	14053.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	31.46	43.31	12.02	61.4	39.19	32.15	27.46	21.22	17.49
Merged-chr11-72042391-2	chr11	72041897	72042897	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-105.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	9.15	4.61	3.7	3.37	1.87	8.04	13.73	3.54	0.62
Merged-chr9-37421399-1	chr9	37420899	37421899	+	780.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164767, intron 16 of 27)	intron (NM_001164767, intron 16 of 27)	11776.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	6.86	10.6	11.1	17.54	17.73	16.08	3.17	7.96	11.87
Merged-chr11-34026870-3	chr11	34026371	34027371	+	780.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MTB|LTR|ERVL-MaLR	-20057.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	38.33	33.64	49.02	41.16	27.52	62.7	39.08	24.32	34.97
Merged-chr14-51048131-1	chr14	51047631	51048631	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2032.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	10.3	6.91	8.32	14.17	5.6	4.02	8.45	0.0	4.37
Merged-chr6-114908153-3	chr6	114907651	114908651	+	780.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	13670.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	55.49	51.61	54.57	58.03	48.05	55.46	69.71	57.04	25.61
Merged-chr8-47872523-3	chr8	47872034	47873034	+	780.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 9 of 22)	intron (NM_133791, intron 9 of 22)	48052.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	11.44	1.84	1.85	4.05	2.8	2.41	3.17	2.21	8.74
Merged-chr7-139683876-1	chr7	139683376	139684376	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302546)	promoter-TSS (NM_001302546)	-61.0	NM_001302546	212124.0	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	6.29	3.23	3.7	4.72	4.67	8.04	1.06	0.0	3.75
Merged-chr2-135725650-1	chr2	135725150	135726150	+	780.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355156, intron 1 of 37)	intron (NM_001355156, intron 1 of 37)	-39188.0	NM_001355154	18798.0	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	5.15	5.53	3.7	6.07	3.27	1.61	2.11	0.88	0.62
Merged-chr7-98720444-2	chr7	98719946	98720946	+	780.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17199.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	36.04	33.64	7.4	74.89	58.31	51.44	46.47	46.87	22.48
Merged-chr18-69346009-3	chr18	69345420	69346420	+	780.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361126)	promoter-TSS (NM_001361126)	199.0	NM_001361127	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	37.18	40.55	38.85	54.65	31.72	43.4	116.18	77.82	41.22
Merged-chr13-107904652-3	chr13	107904134	107905134	+	780.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14570.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	120.13	100.45	86.95	114.7	83.04	103.69	87.66	105.68	76.82
Merged-chr14-60290539-3	chr14	60290051	60291051	+	780.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	25346.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	41.19	65.89	52.72	49.93	48.52	36.97	45.42	49.96	48.71
Merged-chr5-139344237-2	chr5	139343733	139344733	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197980, intron 1 of 2)	intron (NM_197980, intron 1 of 2)	933.0	NM_197980	68033.0	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	17.16	15.67	8.32	13.49	9.8	15.27	21.12	10.17	7.49
Merged-chr19-37604165-2	chr19	37603664	37604664	+	780.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	53746.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	16.59	5.53	11.1	12.82	10.73	4.82	3.17	2.65	3.75
Merged-chr8-25067514-2	chr8	25067027	25068027	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-28565.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	20.59	16.13	9.25	27.66	23.33	26.53	14.79	10.61	11.87
Merged-chr16-18342877-2	chr16	18342360	18343360	+	780.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	1050.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	10.3	14.75	13.87	13.49	9.8	9.65	8.45	10.17	13.74
Merged-chr17-74434727-3	chr17	74434202	74435202	+	780.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033367, intron 7 of 8)	intron (NM_001033367, intron 7 of 8)	24406.0	NM_001033367	268973.0	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	29.17	22.58	5.55	24.29	12.6	21.7	21.12	16.8	13.74
Merged-chr19-55743157-3	chr19	55742664	55743664	+	780.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001331147, exon 3 of 14)	exon (NM_001331147, exon 3 of 14)	1354.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	112.12	122.57	125.79	86.36	72.78	133.43	119.35	87.11	121.16
Merged-chr1-105987261-3	chr1	105986759	105987759	+	780.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	B3A|SINE|B2	3023.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	115.55	124.41	72.15	136.29	102.63	104.49	178.5	160.06	68.07
Merged-chr14-64185569-1	chr14	64185069	64186069	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	81246.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	30.89	37.78	9.25	29.01	21.46	14.47	25.35	20.34	6.25
Merged-chr10-18469418-1	chr10	18468918	18469918	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-563.0	NM_001163592	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	5.15	5.07	5.55	4.72	4.2	0.0	5.28	3.54	5.62
Merged-chr18-36708471-2	chr18	36707976	36708976	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12551.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	27.46	24.42	5.55	40.48	27.52	48.23	13.73	18.13	21.23
Merged-chr2-91476814-3	chr2	91476312	91477312	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 10 of 37)	MIRb|SINE|MIR	19281.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	72.08	35.94	22.2	70.17	55.05	42.6	43.3	38.03	23.73
Merged-chr12-32953041-1	chr12	32952541	32953541	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013635)	promoter-TSS (NM_013635)	748.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	62.93	64.97	43.47	49.93	41.52	41.8	60.2	39.8	49.96
Merged-chr17-33996401-2	chr17	33995901	33996901	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347346, exon 8 of 8)	3' UTR (NM_001347346, exon 8 of 8)	3932.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	20.02	5.53	10.17	4.05	4.67	8.84	10.56	6.63	5.0
Merged-chr4-135679577-2	chr4	135679064	135680064	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6893.0	NM_174851	242700.0	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	5.72	4.61	1.85	2.02	2.8	0.8	2.11	0.44	1.25
Merged-chr6-97460653-2	chr6	97460168	97461168	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	Kanga2_a|DNA|TcMar-Tc2	-1382.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	92.67	118.42	101.74	137.64	133.89	213.81	142.59	172.45	131.15
Merged-chrX-71264098-2	chrX	71263597	71264597	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	49023.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	24.03	20.27	12.95	22.27	14.93	20.09	22.18	23.88	11.87
Merged-chr6-67129379-1	chr6	67128879	67129879	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91972.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.15	1.84	0.0	4.05	4.67	4.82	4.22	0.88	2.5
Merged-chr16-18406489-2	chr16	18405989	18406989	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007744)	TTS (NM_007744)	7005.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	18.31	14.28	24.05	10.8	9.8	16.08	19.01	13.27	13.74
Merged-chr2-84887976-1	chr2	84887476	84888476	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1284.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	4.0	2.76	5.55	3.37	0.47	1.61	5.28	3.98	6.25
Merged-chr11-120902614-2	chr11	120902131	120903131	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 6 of 18)	intron (NM_027745, intron 6 of 18)	30241.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	24.6	29.95	30.52	41.83	33.12	45.82	19.01	30.07	19.36
Merged-chr3-116649541-2	chr3	116649049	116650049	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008246, intron 2 of 11)	intron (NM_008246, intron 2 of 11)	13128.0	NM_008246	15247.0	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	84.66	124.87	74.0	76.24	81.17	102.88	85.55	94.18	81.19
Merged-chr3-122247322-1	chr3	122246822	122247822	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	1765.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	12.59	23.04	9.25	12.82	14.93	12.06	11.62	16.8	13.12
Merged-chr5-86190950-2	chr5	86190451	86191451	+	780.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	B3A|SINE|B2	6950.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	45.19	38.25	37.0	5.4	3.27	4.82	24.29	38.47	26.23
Merged-chr11-118362638-2	chr11	118362142	118363142	+	780.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7231.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	49.77	38.71	44.4	53.3	32.19	53.05	34.85	36.7	22.48
Merged-chr1-157446554-3	chr1	157446071	157447071	+	780.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-11997.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	22.88	17.97	5.55	34.41	27.52	30.54	23.24	22.11	12.49
Merged-chr11-85811389-3	chr11	85810907	85811907	+	780.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	20981.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	17.16	15.21	15.72	20.24	24.26	47.42	15.84	14.59	18.74
Merged-chr16-59559168-3	chr16	59558681	59559681	+	780.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3429.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	61.21	83.86	29.6	72.19	68.11	51.44	98.23	118.5	66.82
Merged-chr7-88998133-3	chr7	88997616	88998616	+	780.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	340671.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	10.3	23.04	16.65	14.84	9.33	15.27	8.45	8.84	5.0
Merged-chr10-30797020-2	chr10	30796526	30797526	+	780.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	MTB_Mm|LTR|ERVL-MaLR	6300.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	13.16	15.67	12.95	13.49	7.46	9.65	7.39	5.75	5.62
Merged-chr7-99982430-2	chr7	99981935	99982935	+	780.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1977.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	14.3	11.98	22.2	7.42	7.93	17.68	23.24	17.24	12.49
Merged-chr18-65671151-1	chr18	65670651	65671651	+	780.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-27117.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	42.9	41.47	30.52	39.81	48.05	20.9	1.06	1.33	6.87
Merged-chr19-26853922-3	chr19	26853424	26854424	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30017.0	NR_045306	70942.0	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	5.72	6.45	0.0	3.37	3.27	13.66	1.06	3.54	3.12
Merged-chr9-57862059-3	chr9	57861545	57862545	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27811.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	4.58	3.69	1.85	6.07	4.67	0.0	3.17	2.65	3.75
Merged-chr10-80117105-3	chr10	80116558	80117558	+	780.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301853, intron 1 of 8)	T-rich|Low_complexity|Low_complexity	1255.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	34.32	32.25	51.8	33.06	27.99	12.06	40.14	22.99	35.6
Merged-chr4-55960230-2	chr4	55959737	55960737	+	780.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427762.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.01	5.07	6.47	2.7	3.73	6.43	1.06	0.44	6.25
Merged-chr9-47587968-2	chr9	47587482	47588482	+	780.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	57630.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	69.22	56.22	49.02	73.54	63.91	75.56	10.56	2.21	3.75
Merged-chr17-63324246-3	chr17	63323761	63324761	+	780.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	-11288.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	4.0	2.3	1.85	7.42	1.4	1.61	3.17	4.42	3.12
Merged-chr14-56689396-1	chr14	56688896	56689896	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153396, intron 9 of 12)	intron (NR_153396, intron 9 of 12)	11604.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	16.59	25.8	11.1	31.04	20.53	24.11	28.52	31.39	12.49
Merged-chr4_JH584295_random-1859-1	chr4_JH584295_random	1359	2359	+	780.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		GC_rich|Low_complexity|Low_complexity											0.0	0.0	0.0	0.0	0.0	0.0	38.02	50.41	0.0
Merged-chr3-129213903-1	chr3	129213403	129214403	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001287048)	promoter-TSS (NM_001287048)	-29.0	NM_001287048	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	5.72	1.84	0.92	1.35	0.0	4.82	2.11	0.0	2.5
Merged-chr17-81705392-2	chr17	81704874	81705874	+	780.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	33013.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	51.48	63.13	54.57	86.36	59.71	86.01	71.82	76.49	50.59
Merged-chr8-73289870-3	chr8	73289370	73290370	+	780.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	63670.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	10.3	8.29	3.7	14.84	10.73	1.61	3.17	6.19	4.37
Merged-chr18-51470980-2	chr18	51470472	51471472	+	780.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	353074.0	NM_001081224	71373.0	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	1.72	3.23	3.7	2.02	3.73	1.61	6.34	4.42	3.75
Merged-chr12-52283796-2	chr12	52283287	52284287	+	780.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 7 of 10)	MTC|LTR|ERVL-MaLR	186041.0	NM_029760	76826.0	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	7.44	16.13	5.55	10.8	5.13	8.04	17.96	14.59	9.99
Merged-chr16-52059775-3	chr16	52059283	52060283	+	780.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	28234.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	85.24	79.72	77.7	77.59	74.64	57.07	111.96	162.28	51.21
Merged-chr13-41525483-3	chr13	41524974	41525974	+	780.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38114.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	25.17	20.27	9.25	18.22	15.86	17.68	19.01	14.15	16.24
Merged-chr2-118374053-2	chr2	118373518	118374518	+	780.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201367)	promoter-TSS (NM_201367)	-599.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	1.14	2.76	1.85	3.37	4.2	3.22	7.39	2.21	6.25
Merged-chr5-32610287-3	chr5	32609798	32610798	+	780.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-873.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	8.01	8.75	5.55	6.75	3.73	1.61	9.51	3.54	5.0
Merged-chr3-16004070-1	chr3	16003570	16004570	+	780.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	intron (NM_001081687, intron 1 of 3)	2262.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	26.89	35.48	15.72	22.27	35.92	30.54	23.24	28.3	10.62
Merged-chr4-59455181-3	chr4	59454688	59455688	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16555.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	59.49	63.13	47.17	78.94	68.58	78.77	34.85	31.84	24.36
Merged-chr2-160375048-3	chr2	160374550	160375550	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7985.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	24.03	12.44	15.72	21.59	3.73	8.04	21.12	5.31	13.74
Merged-chr17-31002775-2	chr17	31002277	31003277	+	780.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 19 of 21)	intron (NM_177465, intron 19 of 21)	48094.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	13.16	24.88	10.17	51.28	33.59	25.72	74.99	96.83	45.59
Merged-chr18-60214449-4	chr18	60213965	60214965	+	780.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033767, intron 2 of 2)	intron (NM_001033767, intron 2 of 2)	2388.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	70.36	117.04	57.35	66.12	59.71	40.99	117.24	105.68	70.57
Merged-chr11-67608348-2	chr11	67607858	67608858	+	780.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 2 of 13)	intron (NM_001109657, intron 2 of 13)	11803.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	9.72	4.15	9.25	3.37	2.8	3.22	1.06	3.98	1.25
Merged-chr17-80801519-2	chr17	80801021	80802021	+	780.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73496.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	13.16	5.53	12.02	11.47	9.33	8.04	20.07	13.27	17.49
Merged-chr9-47626067-3	chr9	47625528	47626528	+	780.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	ORR1B2|LTR|ERVL-MaLR	95676.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	94.39	130.86	82.32	115.38	98.43	80.38	107.73	119.39	81.19
Merged-chr7-63980308-3	chr7	63979780	63980780	+	780.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-41365.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	9.72	5.07	3.7	8.77	5.13	6.43	10.56	6.63	5.0
Merged-chr4-6376764-2	chr4	6376265	6377265	+	780.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	11085.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	46.91	31.79	18.5	43.18	45.72	39.39	51.75	37.14	23.11
Merged-chr7-80729881-3	chr7	80729382	80730382	+	780.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 28 of 37)	intron (NM_016721, intron 28 of 37)	-41005.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	9.72	6.45	1.85	14.17	4.2	4.82	8.45	3.1	3.75
Merged-chr17-6795320-1	chr17	6794820	6795820	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12540.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	57.21	51.15	13.87	63.42	29.39	29.74	64.43	45.54	23.73
Merged-chr17-3558595-2	chr17	3558093	3559093	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146074)	promoter-TSS (NM_146074)	769.0	NR_045302	68230.0	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	25.74	28.57	10.17	9.45	21.93	31.35	41.19	42.89	41.22
Merged-chr16-34738878-1	chr16	34738378	34739378	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-46072.0	NM_139300	107589.0	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	4.58	3.69	1.85	0.0	4.2	11.25	13.73	1.33	13.12
Merged-chr9-60744511-1	chr9	60744011	60745011	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	31390.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	3.43	5.07	3.7	4.72	5.13	8.84	3.17	0.44	9.99
Merged-chr7-102567959-2	chr7	102567458	102568458	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_009277	20821.0	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	12.01	24.42	11.1	14.17	19.13	6.43	10.56	18.57	12.49
Merged-chr4-62348337-4	chr4	62347829	62348829	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 2 of 27)	intron (NM_001355385, intron 2 of 27)	12267.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	26.31	43.77	33.3	26.31	35.92	35.37	33.8	19.46	35.6
Merged-chr1-93166036-1	chr1	93165536	93166536	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-2387.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	1.14	7.37	1.85	5.4	5.6	6.43	5.28	3.54	2.5
Merged-chr5-74948762-1	chr5	74948262	74949262	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045866)	promoter-TSS (NR_045866)	-432.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	1.72	2.76	1.85	10.8	7.0	17.68	4.22	0.0	3.75
Merged-chr13-45393231-1	chr13	45392731	45393731	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	3489.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	46.91	38.71	20.35	49.25	29.86	49.03	41.19	36.26	31.85
Merged-chr17-49432562-2	chr17	49432074	49433074	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020042, intron 1 of 10)	intron (NM_020042, intron 1 of 10)	4210.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	7.44	18.89	33.3	19.57	14.46	51.44	20.07	10.17	21.23
Merged-chrX-12139379-1	chrX	12138879	12139879	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	20967.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	6.86	9.22	15.72	9.45	4.67	5.63	6.34	2.21	5.62
Merged-chr2-157424157-3	chr2	157423638	157424638	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009271)	promoter-TSS (NM_009271)	-155.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	72.65	44.24	59.2	85.69	27.52	40.99	30.63	13.27	14.99
Merged-chr14-68695950-1	chr14	68695450	68696450	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40108.0	NM_183366	13522.0	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	6.29	3.69	0.0	4.05	0.47	1.61	0.0	0.88	7.49
Merged-chr1-91052371-1	chr1	91051871	91052871	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-1073.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	109.83	83.86	74.0	100.53	69.51	86.01	70.76	82.24	66.82
Merged-chr4-133853679-1	chr4	133853179	133854179	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	21052.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	18.31	8.29	13.87	12.82	14.93	12.06	8.45	2.65	3.75
Merged-chr9-104678260-1	chr9	104677760	104678760	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	108777.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	16.02	5.99	2.77	10.8	12.6	17.68	2.11	0.0	6.25
Merged-chr10-62505564-2	chr10	62505077	62506077	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	intron (NM_001358965, intron 2 of 3)	2180.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	125.28	101.37	76.77	127.52	99.37	131.02	91.89	102.14	64.95
Merged-chr17-8264818-2	chr17	8264334	8265334	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18979.0	NM_018819	55951.0	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	2.86	2.3	7.4	3.37	5.13	1.61	9.51	2.21	0.0
Merged-chr10-93911576-2	chr10	93911077	93912077	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20375.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	2.86	4.61	0.0	10.12	6.06	5.63	7.39	3.54	0.0
Merged-chr3-78314548-2	chr3	78314056	78315056	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	830331.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	2.29	0.92	1.85	4.72	3.73	1.61	2.11	1.77	7.49
Merged-chr11-29806477-1	chr11	29805977	29806977	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	Lx8|LINE|L1	19191.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	16.59	14.75	12.95	23.62	17.73	28.94	15.84	14.59	11.24
Merged-chr6-38939951-2	chr6	38939440	38940440	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	RLTR17B_Mm|LTR|ERVK	20954.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	148.16	123.95	107.29	139.67	78.37	87.61	152.09	132.21	58.71
Merged-chr6-97406523-1	chr6	97406023	97407023	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	52763.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	20.02	15.21	22.2	14.84	14.0	29.74	13.73	11.5	27.48
Merged-chr8-36758678-1	chr8	36758178	36759178	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-25624.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.72	4.15	5.55	4.72	5.6	7.23	1.06	2.65	3.75
Merged-chr11-110727865-1	chr11	110727365	110728365	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240168.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	1.14	5.99	3.7	8.1	5.6	1.61	1.06	5.31	2.5
Merged-chr16-56677363-1	chr16	56676863	56677863	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014399, intron 22 of 27)	intron (NM_001014399, intron 22 of 27)	40087.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	3.43	5.07	1.85	5.4	2.8	1.61	1.06	1.77	1.25
Merged-chr1-142688970-1	chr1	142688470	142689470	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-951727.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	1.72	4.15	0.0	3.37	6.53	0.0	2.11	4.42	0.0
Merged-chr15-66866072-2	chr15	66865581	66866581	+	780.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25312.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	18.88	9.68	23.12	16.87	4.2	20.09	31.69	16.36	14.36
Merged-chr9-90265962-1	chr9	90265462	90266462	+	780.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4807.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	42.9	44.7	40.7	46.56	40.12	36.17	69.71	57.04	26.23
Merged-chr9-90263082-1	chr9	90262582	90263582	+	780.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	7687.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	53.77	35.94	26.82	24.29	19.13	34.56	49.64	43.77	25.61
Merged-chr3-107098885-3	chr3	107098388	107099388	+	779.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2679.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	49.77	36.86	60.12	107.28	77.91	57.87	193.28	198.09	74.32
Merged-chr7-98953843-3	chr7	98953347	98954347	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	115002.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	20.59	16.13	17.57	18.22	9.33	5.63	8.45	7.52	9.99
Merged-chr3-144607264-2	chr3	144606763	144607763	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	36836.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	6.86	5.07	10.17	11.47	3.27	7.23	4.22	5.31	7.49
Merged-chr4-145240343-3	chr4	145239829	145240829	+	779.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6541.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	258.0	205.05	145.22	203.76	122.23	195.32	195.39	201.63	154.26
Merged-chr2-153122015-2	chr2	153121487	153122487	+	779.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	tRNA-Ala-GCY_|tRNA|tRNA	13519.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	35.47	36.4	49.02	61.4	71.38	66.71	58.09	82.24	56.83
Merged-chr14-57797571-3	chr14	57797059	57798059	+	779.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142441)	promoter-TSS (NM_001142441)	-630.0	NM_009119	20220.0	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	32.04	61.75	31.45	41.83	64.84	68.32	57.03	85.34	52.46
Merged-chr9-7227496-3	chr9	7226991	7227991	+	779.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	42986.0	NM_029775	76863.0	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	9.72	4.61	12.95	4.05	1.87	3.22	0.0	3.54	5.62
Merged-chr17-80497356-3	chr17	80496863	80497863	+	779.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16910.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	10.3	8.75	3.7	8.77	4.67	7.23	15.84	15.48	8.74
Merged-chr11-115428094-2	chr11	115427606	115428606	+	779.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183285, intron 4 of 5)	intron (NM_183285, intron 4 of 5)	7980.0	NM_183285	70382.0	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	12.59	7.37	1.85	7.42	5.6	1.61	11.62	9.29	1.25
Merged-chr4-59550429-3	chr4	59549918	59550918	+	779.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1054.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	63.5	94.92	62.9	59.38	73.24	36.97	54.92	72.07	50.59
Merged-chr13-44819622-2	chr13	44819110	44820110	+	779.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	88339.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	6.29	5.99	7.4	8.1	4.67	12.86	7.39	7.52	1.87
Merged-chr15-41350074-3	chr15	41349575	41350575	+	779.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97407.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	4.0	6.91	0.92	10.12	6.06	11.25	2.11	0.88	3.75
Merged-chr10-19587836-3	chr10	19587344	19588344	+	779.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-4105.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	33.18	21.2	29.6	16.19	31.26	28.94	22.18	21.67	31.23
Merged-chr14-32077259-3	chr14	32076768	32077768	+	779.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8018.0	NR_104305	105638.0	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	4.58	4.61	0.0	4.72	2.33	2.41	8.45	3.1	5.62
Merged-chr13-96593778-2	chr13	96593280	96594280	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	intron (NM_023420, intron 3 of 17)	51045.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	26.31	25.8	0.0	33.74	11.2	11.25	20.07	28.3	11.87
Merged-chr14-34363908-2	chr14	34363407	34364407	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8514.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	5.15	2.3	1.85	6.75	4.2	6.43	5.28	2.21	1.25
Merged-chr2-21202043-2	chr2	21201546	21202546	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	3319.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.15	9.22	3.7	13.49	3.73	9.65	7.39	7.52	6.25
Merged-chr16-16560309-1	chr16	16559809	16560809	+	779.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139232)	promoter-TSS (NM_139232)	-90.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	8.58	6.45	7.4	7.42	5.6	6.43	3.17	3.1	9.37
Merged-chr1-191184385-3	chr1	191183857	191184857	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-835	-1024.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	88.1	47.0	17.57	62.75	49.92	20.09	64.43	36.26	11.87
Merged-chr8-106136733-2	chr8	106136234	106137234	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_176838, exon 1 of 15)	exon (NM_176838, exon 1 of 15)	240.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	17.16	4.61	3.7	13.49	5.6	0.8	8.45	4.42	3.75
Merged-chr1-143853952-2	chr1	143853454	143854454	+	779.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76676.0	NM_019562	56207.0	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	7.44	3.69	3.7	8.1	7.0	4.82	4.22	2.65	4.37
Merged-chr9-71140333-3	chr9	71139856	71140856	+	779.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	intron (NR_073483, intron 1 of 6)	22277.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	39.47	20.74	7.4	28.34	8.86	4.82	33.8	30.51	21.23
Merged-chr2-167694608-5	chr2	167694176	167695176	+	779.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	intron (NR_015500, intron 1 of 1)	3499.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	42.33	32.72	49.95	31.71	27.06	36.97	29.57	26.09	44.97
Merged-chr1-193191939-2	chr1	193191428	193192428	+	779.724976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153137, intron 8 of 15)	intron (NM_153137, intron 8 of 15)	9618.0	NM_153137	215243.0	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	20.02	6.91	12.95	2.7	5.6	3.22	13.73	6.63	3.75
Merged-chr14-75728827-1	chr14	75728327	75729327	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177381, intron 13 of 22)	intron (NM_177381, intron 13 of 22)	25666.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	28.6	29.95	21.27	22.94	16.79	12.06	28.52	18.13	9.37
Merged-chr15-101141272-3	chr15	101140792	101141792	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 11 of 11)	(CTGGGG)n|Simple_repeat|Simple_repeat	12770.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.72	11.06	8.32	9.45	8.86	5.63	8.45	4.42	4.37
Merged-chr12-55473510-1	chr12	55473010	55474010	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19137.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	83.52	72.8	62.9	103.91	78.84	92.44	80.27	80.92	57.46
Merged-chr4-129188996-3	chr4	129188500	129189500	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134151)	promoter-TSS (NM_134151)	542.0	NM_029036	74648.0	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	85.81	70.96	58.27	65.45	56.91	68.32	94.0	65.0	30.6
Merged-chr19-28612446-1	chr19	28611946	28612946	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-65778.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	6.29	4.15	2.77	11.47	12.13	16.08	4.22	9.29	1.87
Merged-chr5-76705938-1	chr5	76705438	76706438	+	779.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114224.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	18.31	29.95	24.97	36.43	32.66	36.17	53.87	50.41	34.35
Merged-chrX-121232574-1	chrX	121232074	121233074	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-919348.0	NM_001281531	624957.0		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	3.43	4.15	1.85	2.7	1.87	1.61	0.0	2.65	1.25
Merged-chr15-66680136-3	chr15	66679636	66680636	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 8 of 47)	intron (NM_009375, intron 8 of 47)	9366.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	15.45	5.53	12.95	10.8	7.46	12.06	6.34	11.94	8.74
Merged-chr14-101652570-1	chr14	101652070	101653070	+	779.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1397.0	NM_016723	50933.0	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	3.43	5.07	7.4	0.67	2.8	3.22	4.22	3.98	3.75
Merged-chr4-102499090-3	chr4	102498612	102499612	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177983, intron 4 of 5)	intron (NM_001177983, intron 4 of 5)	-70948.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.0	6.91	8.32	11.47	2.8	3.22	8.45	0.88	2.5
Merged-chr1-91299960-3	chr1	91299554	91300554	+	779.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	1716.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	22.31	20.74	9.25	30.36	33.12	28.13	31.69	31.39	18.11
Merged-chr12-85228630-2	chr12	85228102	85229102	+	779.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9121.0	NM_145445	217715.0	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	21.74	16.13	9.25	20.92	13.06	19.29	8.45	8.4	3.75
Merged-chr3-96883627-3	chr3	96883124	96884124	+	779.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026229, intron 7 of 13)	intron (NM_026229, intron 7 of 13)	21674.0	NM_026229	67549.0	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	13.16	29.95	24.97	16.19	25.19	32.15	51.75	51.29	23.11
Merged-chr1-138620200-3	chr1	138619706	138620706	+	779.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311148)	promoter-TSS (NM_001311148)	-449.0	NM_001311148	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	81.8	88.47	82.32	96.48	89.57	86.81	71.82	58.37	57.46
Merged-chr5-136642387-1	chr5	136641887	136642887	+	779.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50759.0	NM_001303019	59310.0	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	1.72	1.84	0.0	4.72	0.47	6.43	1.06	1.33	2.5
Merged-chr3-109478612-5	chr3	109478192	109479192	+	779.59668	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-95315.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	31.46	43.77	37.92	42.51	28.92	34.56	34.85	30.07	34.35
Merged-chr4-86943512-2	chr4	86942998	86943998	+	779.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR31A_Mm|LTR|ERVK	69084.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	16.59	8.29	5.55	14.84	8.4	7.23	1.06	2.65	3.75
Merged-chr16-19985514-3	chr16	19985017	19986017	+	779.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2468.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	6.86	24.42	27.75	8.77	16.79	14.47	31.69	20.34	18.11
Merged-chr16-33177856-3	chr16	33177344	33178344	+	779.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7227.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	40.04	34.56	24.97	31.04	21.46	40.19	32.74	32.72	22.48
Merged-chr5-103706228-3	chr5	103705733	103706733	+	779.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47929.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	6.29	3.69	3.7	2.02	1.87	0.0	5.28	4.86	5.62
Merged-chr17-29414787-3	chr17	29414277	29415277	+	779.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	53863.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	16.02	7.37	8.32	11.47	4.2	1.61	10.56	10.61	11.24
Merged-chr9-3199822-2	chr9	3199313	3200313	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027988)	promoter-TSS (NR_027988)	0.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	2.86	2.76	3.7	0.67	4.67	5.63	2.11	2.21	3.75
Merged-chr4-43672285-2	chr4	43671774	43672774	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355718, intron 1 of 11)	intron (NM_001355718, intron 1 of 11)	3303.0	NM_001355718	242409.0	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	5.15	4.15	7.4	4.05	2.8	1.61	4.22	0.44	0.0
Merged-chr8-122436841-3	chr8	122436398	122437398	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028354, intron 8 of 10)	intron (NR_028354, intron 8 of 10)	-3958.0	NM_007806	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	8.58	5.07	7.4	4.72	2.33	7.23	7.39	1.77	2.5
Merged-chr1-9573349-1	chr1	9572849	9573849	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357376, intron 12 of 12)	intron (NM_001357376, intron 12 of 12)	25401.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	4.0	4.15	3.7	2.7	1.4	0.0	4.22	2.21	4.37
Merged-chr18-60989265-2	chr18	60988763	60989763	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24936.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.57	2.76	0.0	4.05	0.0	1.61	1.06	3.54	1.87
Merged-chr8-39308793-2	chr8	39308315	39309315	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	10835.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	51.48	81.56	41.62	26.31	36.85	25.72	3.17	3.54	2.5
Merged-chr17-8905690-2	chr17	8905194	8906194	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55709.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	12.01	10.14	14.8	13.49	9.8	3.22	3.17	0.44	2.5
Merged-chr13-67060370-2	chr13	67059856	67060856	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166218, intron 1 of 3)	Lx8|LINE|L1	814.0	NM_001166218	78251.0	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	11.44	13.82	0.92	14.17	11.2	12.06	16.9	11.05	11.24
Merged-chr1-77514723-2	chr1	77514224	77515224	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 1 of 17)	CpG	364.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.29	8.75	3.7	11.47	7.0	5.63	2.11	5.31	1.25
Merged-chr7-83581089-1	chr7	83580589	83581589	+	779.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3842.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	5.72	5.99	9.25	3.37	0.0	3.22	5.28	4.86	6.25
Merged-chr16-76409541-1	chr16	76409041	76410041	+	779.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-35714.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	14.3	14.28	5.55	17.54	6.06	8.04	19.01	15.03	11.87
Merged-chr14-47445558-2	chr14	47445052	47446052	+	779.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27009.0	NR_027414	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	20.59	14.75	37.0	42.51	19.13	18.49	25.35	23.88	11.24
Merged-chr3-27614302-2	chr3	27613808	27614808	+	779.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-29313.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	27.46	21.2	9.25	20.24	16.33	24.11	24.29	25.2	18.74
Merged-chr2-131510062-2	chr2	131509563	131510563	+	779.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	18201.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	6.86	9.22	11.1	18.89	7.46	3.22	13.73	6.19	2.5
Merged-chr9-51044842-3	chr9	51044335	51045335	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	32259.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	24.6	12.9	0.0	11.47	5.6	8.84	5.28	5.31	13.12
Merged-chr12-69986406-3	chr12	69985908	69986908	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022028, intron 1 of 4)	intron (NM_022028, intron 1 of 4)	594.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	122.99	98.15	78.62	137.64	90.04	117.35	166.88	107.0	91.81
Merged-chr4-53117803-3	chr4	53117307	53118307	+	779.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	42088.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	35.47	47.0	39.77	47.23	38.25	57.07	53.87	52.62	52.46
Merged-chr2-32494632-3	chr2	32494132	32495132	+	779.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-40727.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	49.77	80.64	69.37	98.51	93.3	52.25	103.51	93.3	49.34
Merged-chr5-24166289-3	chr5	24165788	24166788	+	779.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153092, intron 1 of 6)	RMER6A|LTR|ERVK	1325.0	NM_001346582	231042.0	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	30.89	42.39	36.07	34.41	27.52	11.25	59.15	57.92	30.6
Merged-chr2-11500789-2	chr2	11500295	11501295	+	779.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1295.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	53.2	45.16	46.25	78.27	103.56	53.85	83.44	68.09	13.74
Merged-chr19-53449370-2	chr19	53448884	53449884	+	779.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_028427, exon 5 of 10)	non-coding (NR_028427, exon 5 of 10)	15412.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	10.3	4.61	0.92	9.45	1.87	3.22	1.06	3.54	2.5
Merged-chr13-83649957-2	chr13	83649399	83650399	+	779.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347576, intron 6 of 10)	intron (NM_001347576, intron 6 of 10)	-71482.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	6.29	4.15	8.32	7.42	6.53	4.82	2.11	2.21	0.0
Merged-chr7-143107182-6	chr7	143106765	143107765	+	779.402771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008434)	promoter-TSS (NM_008434)	11.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	14.87	17.97	20.35	16.19	14.0	4.02	33.8	19.46	11.87
Merged-chr2-72384361-3	chr2	72383852	72384852	+	779.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 9 of 19)	intron (NM_023057, intron 9 of 19)	-91867.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	2.86	1.84	0.92	0.0	3.27	0.0	1.06	11.5	6.87
Merged-chr15-59951129-3	chr15	59950662	59951662	+	779.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65456.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	37.18	47.46	36.07	38.46	28.92	36.17	35.91	39.8	29.35
Merged-chr13-52530774-3	chr13	52530262	52531262	+	779.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024474)	promoter-TSS (NM_001024474)	74.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	8.58	2.3	1.85	4.72	4.2	4.82	5.28	1.77	5.0
Merged-chr5-53662655-2	chr5	53662163	53663163	+	779.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	35925.0	NR_024201	19866.0		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	1.72	2.76	1.85	4.72	4.67	0.8	3.17	3.98	5.62
Merged-chr11-76993110-3	chr11	76992619	76993619	+	779.3388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5478.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	3.43	5.53	1.85	2.02	4.2	3.22	2.11	2.65	7.49
Merged-chr16-14362876-2	chr16	14362357	14363357	+	779.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	1299.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	24.03	28.11	10.17	31.04	24.26	21.7	33.8	33.6	19.36
Merged-chr12-102720948-2	chr12	102720437	102721437	+	779.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16068.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	97.82	62.67	39.77	58.7	66.24	79.58	63.37	39.35	35.6
Merged-chr11-95417479-3	chr11	95416982	95417982	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	intron (NM_001359107, intron 1 of 9)	3399.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	225.39	258.04	142.44	103.23	61.11	69.93	154.2	198.53	80.56
Merged-chr7-46917961-3	chr7	46917493	46918493	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021884, intron 1 of 9)	L2a|LINE|L2	1976.0	NM_001348089	22088.0	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	41.76	49.3	46.25	30.36	24.26	34.56	49.64	26.97	54.96
Merged-chr2-34749916-3	chr2	34749422	34750422	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	5310.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	25.17	30.41	23.12	26.31	29.39	38.58	14.79	22.11	21.23
Merged-chr9-59548050-3	chr9	59547529	59548529	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	L2c|LINE|L2	8489.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	48.05	65.43	76.77	51.95	54.58	95.65	70.76	50.41	57.46
Merged-chr8-8441170-1	chr8	8440670	8441670	+	779.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	219603.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	3.43	2.3	1.85	2.7	8.4	3.22	4.22	4.42	8.74
Merged-chr2-167367973-3	chr2	167367493	167368493	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18815.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	136.15	66.35	44.4	165.98	82.57	61.09	108.79	110.98	43.09
Merged-chr4-128924357-3	chr4	128923856	128924856	+	779.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38099.0	NM_172875	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	6.29	7.37	5.55	4.05	3.73	9.65	11.62	7.52	9.37
Merged-chr4-66830618-3	chr4	66830016	66831016	+	779.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021297, intron 1 of 2)	Lx2|LINE|L1	2965.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	35.47	53.91	39.77	47.23	35.45	46.62	25.35	29.63	28.1
Merged-chr5-121718646-3	chr5	121718161	121719161	+	779.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	7052.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	15.45	11.98	12.95	7.42	5.13	15.27	10.56	15.03	8.12
Merged-chrX-78483245-1	chrX	78482745	78483745	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 3 of 3)	intron (NM_027322, intron 3 of 3)	100560.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	5.72	7.37	5.55	2.7	7.46	4.82	5.28	2.21	1.25
Merged-chr14-73170109-2	chr14	73169611	73170611	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134083, intron 10 of 14)	intron (NM_134083, intron 10 of 14)	27326.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	66.36	50.69	44.4	64.1	48.05	58.68	52.81	41.12	24.36
Merged-chr12-8345034-1	chr12	8344534	8345534	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31601.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	10.87	8.29	23.12	14.84	19.13	13.66	5.28	4.86	9.99
Merged-chr10-46012173-2	chr10	46011698	46012698	+	779.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	204494.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	6.29	2.76	1.85	1.35	4.67	0.0	1.06	2.65	3.75
Merged-chr11-103987581-3	chr11	103987057	103988057	+	779.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20686.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	9.72	11.06	17.57	9.45	4.2	2.41	7.39	1.77	6.25
Merged-chr7-98355457-3	chr7	98354952	98355952	+	779.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168541, intron 2 of 3)	intron (NM_001168541, intron 2 of 3)	5836.0	NM_001168540	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	10.87	16.59	4.62	26.31	15.39	6.43	12.67	9.73	7.49
Merged-chr11-50228847-3	chr11	50228362	50229362	+	779.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	intron (NM_145926, intron 1 of 14)	-3383.0	NR_105884	102466765.0		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	128.14	91.24	74.92	130.9	86.3	63.5	85.55	61.9	66.2
Merged-chr9-45092984-1	chr9	45092484	45093484	+	779.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 5 of 10)	intron (NM_001005421, intron 5 of 10)	13801.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	18.88	28.57	21.27	37.11	36.85	57.07	3.17	0.0	3.75
Merged-chr19-29501171-4	chr19	29500644	29501644	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	20843.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	81.8	92.16	89.72	125.5	146.02	112.53	166.88	164.49	84.94
Merged-chr10-10474459-3	chr10	10473980	10474980	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-2166.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	12.59	17.97	20.35	16.87	16.33	22.51	22.18	20.78	16.86
Merged-chr16-20088005-3	chr16	20087512	20088512	+	779.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9542.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	5.72	3.69	9.25	6.75	2.33	1.61	6.34	4.42	2.5
Merged-chr7-24950487-2	chr7	24949993	24950993	+	779.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19582.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	3.43	2.76	6.47	4.05	0.93	8.04	5.28	0.0	1.25
Merged-chr9-78022401-2	chr9	78021897	78022897	+	779.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-29561.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	2.86	2.3	1.85	4.05	2.33	1.61	2.11	1.33	0.0
Merged-chr17-33563334-3	chr17	33562819	33563819	+	779.138855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	7612.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	156.17	177.86	125.79	89.06	97.97	122.98	110.9	137.96	127.4
Merged-chr3-51396663-3	chr3	51396183	51397183	+	779.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026358)	promoter-TSS (NM_026358)	-136.0	NM_026358	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	2.29	5.53	5.55	6.07	2.8	3.22	7.39	5.31	7.49
Merged-chr5-75871302-3	chr5	75870832	75871832	+	779.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107096.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	2.29	2.76	5.55	4.05	3.27	1.61	2.11	1.33	7.49
Merged-chr6-122892654-2	chr6	122892148	122893148	+	779.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18091.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	14.87	5.99	5.55	10.8	1.87	5.63	2.11	5.75	1.25
Merged-chr11-21377736-2	chr11	21377253	21378253	+	779.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6486.0	NM_001290634	216558.0	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	14.87	21.2	46.25	9.45	14.93	40.99	23.24	22.55	29.98
Merged-chr19-5599391-2	chr19	5598897	5599897	+	779.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	12.59	15.67	18.5	13.49	14.93	17.68	3.17	1.33	3.75
Merged-chr5-21545483-3	chr5	21544989	21545989	+	779.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 11 of 20)	intron (NM_001199632, intron 11 of 20)	1962.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	5.72	4.61	5.55	7.42	2.33	5.63	8.45	3.1	5.0
Merged-chrX-12079398-3	chrX	12078861	12079861	+	779.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	1192.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	76.66	52.07	61.97	45.21	42.92	53.05	72.88	56.16	44.34
Merged-chr2-131767645-3	chr2	131767142	131768142	+	779.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80014.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	6.29	4.15	22.2	6.07	5.6	5.63	2.11	5.75	1.25
Merged-chr11-96874246-1	chr11	96873746	96874746	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23853.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	2.86	2.3	3.7	7.42	8.4	5.63	52.81	53.06	48.09
Merged-chr2-167419383-3	chr2	167418876	167419876	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2334.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	12.01	7.37	6.47	4.05	5.13	1.61	5.28	4.42	6.25
Merged-chr18-44662194-2	chr18	44661685	44662685	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085374)	promoter-TSS (NM_001085374)	81.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	1.72	1.84	6.47	8.77	5.13	1.61	0.0	1.33	1.25
Merged-chr3-107953523-1	chr3	107953023	107954023	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9774.0	NM_008184	14867.0	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	3.43	3.23	3.7	5.4	0.93	6.43	1.06	1.77	0.0
Merged-chrX-159757005-1	chrX	159756505	159757505	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	L1MB4|LINE|L1	48404.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	13.73	9.22	1.85	4.72	15.86	22.51	11.62	5.31	1.25
Merged-chr10-72655399-2	chr10	72654887	72655887	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293683, intron 1 of 7)	intron (NM_001293683, intron 1 of 7)	541.0	NM_001293683	52696.0	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	98.97	75.11	51.8	88.39	77.91	72.34	71.82	73.84	22.48
Merged-chr10-91188130-2	chr10	91187630	91188630	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16511.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	27.46	28.11	20.35	21.59	24.72	14.47	21.12	17.24	16.24
Merged-chr6-143373924-1	chr6	143373424	143374424	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	128036.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	1.72	1.84	3.7	4.05	1.4	1.61	0.0	0.44	3.75
Merged-chr3-148419812-1	chr3	148419312	148420312	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	534823.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.43	4.15	0.0	2.02	2.8	4.82	3.17	1.33	7.49
Merged-chr6-38355519-1	chr6	38355019	38356019	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347122)	promoter-TSS (NM_001347122)	-916.0	NM_028864	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	62.93	64.05	39.77	62.07	58.31	53.85	108.79	93.74	45.59
Merged-chr14-105018146-1	chr14	105017646	105018646	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	96530.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	6.29	3.69	0.0	4.05	4.2	0.0	0.0	0.44	4.37
Merged-chr13-34994661-2	chr13	34994170	34995170	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_073427)	promoter-TSS (NR_073427)	-526.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	58.35	49.3	53.65	56.0	43.85	57.87	53.87	39.35	40.59
Merged-chr12-102747782-1	chr12	102747282	102748282	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142939, intron 1 of 1)	intron (NM_001142939, intron 1 of 1)	4022.0	NM_177140	320351.0	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	156.74	176.02	121.17	125.5	149.28	106.1	159.48	253.8	79.94
Merged-chr14-57664488-1	chr14	57663988	57664988	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020506, intron 1 of 22)	intron (NM_020506, intron 1 of 22)	468.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	70.93	72.8	88.8	58.7	61.11	80.38	100.34	60.13	57.46
Merged-chr8-71519210-3	chr8	71518731	71519731	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7462.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	4.0	2.3	1.85	2.7	0.93	0.0	4.22	1.33	1.25
Merged-chr7-83568270-2	chr7	83567770	83568770	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16661.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	14.3	12.9	7.4	14.17	7.0	16.88	48.58	37.58	15.61
Merged-chr11-16948990-1	chr11	16948490	16949490	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110421, intron 2 of 5)	intron (NR_110421, intron 2 of 5)	2292.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	1.72	1.38	10.17	8.1	1.4	1.61	4.22	3.1	6.87
Merged-chr18-23604075-1	chr18	23603575	23604575	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010087, exon 12 of 12)	3' UTR (NM_010087, exon 12 of 12)	106593.0	NM_001285810	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	6.29	3.69	6.47	2.7	2.33	3.22	1.06	3.1	5.0
Merged-chr6-39257098-1	chr6	39256598	39257598	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50325.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	43.48	25.8	41.62	39.81	32.19	35.37	31.69	37.14	22.48
Merged-chr13-60613764-1	chr13	60613264	60614264	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	11553.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	21.17	14.28	14.8	16.87	19.13	19.29	12.67	10.61	13.12
Merged-chr6-48444993-1	chr6	48444493	48445493	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001085415)	promoter-TSS (NM_001085415)	97.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	48.05	29.03	74.0	35.09	26.12	60.28	58.09	41.56	49.34
Merged-chr3-148221627-1	chr3	148221127	148222127	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	733008.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	23.45	13.82	9.25	35.09	17.26	8.84	6.34	3.98	0.0
Merged-chr2-113911366-1	chr2	113910866	113911866	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62705.0	NM_181416	228482.0	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	2.86	3.23	0.0	3.37	4.2	3.22	2.11	2.21	0.0
Merged-chr1-166802153-2	chr1	166801665	166802665	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-120320.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	2.86	2.3	3.7	9.45	2.8	3.22	8.45	5.75	0.0
Merged-chr8-85513409-3	chr8	85512873	85513873	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 6 of 11)	MER5A|DNA|hAT-Charlie	20756.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	10.3	19.35	25.9	29.01	32.19	22.51	32.74	33.6	9.99
Merged-chr6-72145566-1	chr6	72145066	72146066	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-22369.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	24.6	13.82	33.3	16.19	14.46	26.53	11.62	7.96	21.86
Merged-chr5-74820556-1	chr5	74820056	74821056	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117653.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	8.01	5.07	3.7	14.17	6.53	12.86	1.06	0.88	2.5
Merged-chr11-23211244-1	chr11	23210744	23211744	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44797.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	14.87	9.68	14.8	16.19	13.53	20.9	11.62	11.94	4.37
Merged-chr2-59541706-1	chr2	59541206	59542206	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57053.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	6.86	0.92	1.85	0.67	2.33	0.0	3.17	1.77	1.25
Merged-chr8-4140251-3	chr8	4139750	4140750	+	779.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5514.0	NM_027343	70192.0	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	4.0	2.76	3.7	4.72	0.47	1.61	2.11	1.77	0.0
Merged-chr2-148877586-2	chr2	148877078	148878078	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2066.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	12.01	33.18	28.67	25.64	20.99	29.74	22.18	18.13	35.6
Merged-chr13-20305867-1	chr13	20305367	20306367	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-167123.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.15	7.83	18.5	15.52	3.73	8.84	11.62	12.38	8.74
Merged-chr14-33232225-1	chr14	33231725	33232725	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	15402.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	24.6	16.13	9.25	27.66	24.26	28.94	5.28	4.86	7.49
Merged-chr19-21948194-1	chr19	21947694	21948694	+	779.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	169854.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.29	3.23	0.0	5.4	5.6	0.8	9.51	11.5	6.87
Merged-chr10-111011065-1	chr10	111010565	111011565	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172554)	promoter-TSS (NM_172554)	-999.0	NM_172554	320150.0	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|DHHC-17|Hip14	zinc finger, DHHC domain containing 17	protein-coding	36.61	28.11	34.22	31.04	28.46	12.86	53.87	65.0	26.85
Merged-chr5-96949350-1	chr5	96948850	96949850	+	779.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	28078.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	13.16	11.52	12.02	30.36	27.52	19.29	23.24	23.43	4.37
Merged-chr3-51859390-3	chr3	51858876	51859876	+	778.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	198197.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.29	6.91	5.55	4.05	5.13	19.29	4.22	3.54	1.25
Merged-chr11-103362361-4	chr11	103361926	103362926	+	778.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205236, intron 1 of 17)	intron (NM_001205236, intron 1 of 17)	1266.0	NM_183288	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	108.12	106.44	135.97	110.65	97.5	110.92	103.51	143.26	88.68
Merged-chr2-102823644-2	chr2	102823123	102824123	+	778.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 12 of 13)	intron (NM_001039150, intron 12 of 13)	-76863.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	6.29	10.6	12.95	22.27	6.53	16.08	15.84	13.27	13.74
Merged-chr16-91731266-3	chr16	91730763	91731763	+	778.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	1892.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	48.05	64.97	37.92	85.01	70.44	45.01	102.45	105.24	61.2
Merged-chr12-17271489-3	chr12	17270973	17271973	+	778.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027959, intron 2 of 12)	ORR1D2|LTR|ERVL-MaLR	4878.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	11.44	11.06	7.4	7.42	7.0	8.04	6.34	5.31	7.49
Merged-chr11-94506147-2	chr11	94505648	94506648	+	778.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170671, intron 13 of 18)	intron (NM_170671, intron 13 of 18)	-6174.0	NM_027984	71889.0	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	2.29	3.69	3.7	3.37	4.2	0.0	1.06	3.1	3.75
Merged-chr16-14164143-2	chr16	14163632	14164632	+	778.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114085, intron 1 of 8)	intron (NM_001114085, intron 1 of 8)	857.0	NM_001114085	67203.0	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	13.73	16.13	10.17	14.84	10.26	13.66	16.9	7.52	8.74
Merged-chr13-36324873-2	chr13	36324380	36325380	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	207237.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.15	6.45	5.55	11.47	14.93	5.63	10.56	6.19	2.5
Merged-chr12-25190530-2	chr12	25190040	25191040	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61366.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	14.3	11.06	12.95	17.54	25.19	9.65	15.84	4.42	6.25
Merged-chr3-129643349-2	chr3	129642835	129643835	+	778.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81751.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	21.17	16.59	12.95	29.01	24.72	15.27	7.39	7.07	3.75
Merged-chr6-89282780-2	chr6	89282279	89283279	+	778.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	2946.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	22.31	23.04	35.15	39.81	44.32	61.89	38.02	30.95	38.72
Merged-chrX-159752084-3	chrX	159751602	159752602	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	43501.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.72	2.3	3.7	9.45	6.06	1.61	5.28	2.21	8.12
Merged-chr4-53108423-3	chr4	53107935	53108935	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 6 of 49)	intron (NM_013454, intron 6 of 49)	51460.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	18.31	18.89	12.02	49.93	27.99	30.54	40.14	44.22	14.36
Merged-chr16-24517838-3	chr16	24517347	24518347	+	778.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-11467.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	4.58	5.99	5.55	6.07	6.53	15.27	7.39	2.21	13.74
Merged-chr1-95668579-3	chr1	95668041	95669041	+	778.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009183)	promoter-TSS (NM_009183)	-947.0	NM_001159745	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	59.49	60.36	49.02	57.35	53.65	78.77	50.7	66.33	40.59
Merged-chr14-100286101-3	chr14	100285604	100286604	+	778.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136308.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	2.86	2.76	3.7	4.05	0.93	4.82	1.06	2.21	2.5
Merged-chr18-23436523-2	chr18	23436025	23437025	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	21116.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	4.0	4.15	1.85	28.34	19.59	7.23	17.96	11.05	1.25
Merged-chr11-83605720-2	chr11	83605225	83606225	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-12638.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	30.32	16.59	21.27	51.28	40.59	55.46	23.24	17.69	9.99
Merged-chr10-60287439-2	chr10	60286918	60287918	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	2957.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	82.95	67.27	46.25	78.94	65.78	37.78	113.01	103.02	48.71
Merged-chr6-88008919-2	chr6	88008404	88009404	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10891.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	14.87	24.42	25.9	16.87	14.46	18.49	15.84	10.61	21.23
Merged-chr12-76534908-2	chr12	76534386	76535386	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	1326.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	69.79	94.46	61.97	64.77	64.84	93.24	86.61	107.0	81.19
Merged-chr2-84938782-2	chr2	84938291	84939291	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021398, intron 3 of 12)	intron (NM_021398, intron 3 of 12)	2145.0	NM_021398	58207.0	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	8.01	3.69	5.55	8.1	4.2	5.63	20.07	8.4	1.25
Merged-chr17-86283938-2	chr17	86283460	86284460	+	778.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	3218.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	4.58	2.76	7.4	14.17	3.73	4.02	5.28	2.65	3.12
Merged-chr5-64322533-1	chr5	64322033	64323033	+	778.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	Lx7|LINE|L1	92176.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	33.18	17.97	8.32	29.69	39.65	16.88	16.9	9.73	12.49
Merged-chr2-118012428-3	chr2	118011925	118012925	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	Lx9|LINE|L1	98777.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	10.3	9.22	9.25	14.17	11.2	16.08	14.79	18.57	14.99
Merged-chr4-32179918-3	chr4	32179410	32180410	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	215803.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.86	4.15	5.55	8.1	2.8	0.0	5.28	4.42	3.12
Merged-chr4-62626606-3	chr4	62626082	62627082	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019492, intron 14 of 19)	intron (NM_019492, intron 14 of 19)	6910.0	NM_134257	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	5.15	5.07	7.4	10.12	4.2	13.66	6.34	2.65	11.87
Merged-chr3-105928374-3	chr3	105927872	105928872	+	778.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033780, intron 2 of 5)	intron (NM_001033780, intron 2 of 5)	4292.0	NM_001033780	433638.0	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	30.32	26.73	37.92	9.45	14.46	20.09	7.39	10.17	15.61
Merged-chr11-86717683-2	chr11	86717186	86718186	+	778.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 14 of 31)	intron (NM_001003908, intron 14 of 31)	33605.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	49.2	49.76	24.05	55.33	33.12	44.21	52.81	52.18	41.22
Merged-chr7-96409226-2	chr7	96408732	96409732	+	778.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-67268.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	22.31	21.66	16.65	10.8	12.13	5.63	2.11	2.21	3.75
Merged-chr16-50000999-1	chr16	50000499	50001499	+	778.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20539.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	5.15	6.45	7.4	6.75	9.8	8.04	9.51	6.19	7.49
Merged-chr11-79121702-3	chr11	79121193	79122193	+	778.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	24780.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	13.73	7.83	14.8	11.47	9.8	6.43	13.73	9.73	2.5
Merged-chr18-25538360-3	chr18	25537845	25538845	+	778.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	141403.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.14	2.76	1.85	2.02	1.4	1.61	2.11	2.65	3.75
Merged-chr14-120452420-2	chr14	120451927	120452927	+	778.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26034.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.72	12.44	7.4	17.54	11.66	20.9	14.79	10.17	11.24
Merged-chr7-45080042-3	chr7	45079532	45080532	+	778.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12181.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	8.01	6.91	4.62	19.57	4.67	9.65	5.28	4.86	11.87
Merged-chr8-14992935-3	chr8	14992442	14993442	+	778.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037736, intron 26 of 27)	intron (NM_001037736, intron 26 of 27)	-18083.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	4.0	2.3	2.77	6.75	2.8	3.22	2.11	0.88	6.87
Merged-chr9-66883831-3	chr9	66883290	66884290	+	778.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	35915.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	55.49	61.75	33.3	66.12	58.78	53.85	29.57	44.66	30.6
Merged-chr3-28050166-3	chr3	28049663	28050663	+	778.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 11 of 25)	intron (NM_008875, intron 11 of 25)	65992.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	9.15	9.22	18.5	13.49	10.73	12.86	12.67	10.17	4.37
Merged-chr19-37778099-2	chr19	37777589	37778589	+	778.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80281.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	12.59	4.61	4.62	4.72	3.27	6.43	2.11	0.44	2.5
Merged-chr4-145239880-3	chr4	145239374	145240374	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011610, intron 1 of 9)	intron (NM_011610, intron 1 of 9)	6996.0	NM_011610	21938.0	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	180.77	183.85	146.14	157.88	132.49	196.93	159.48	214.45	120.53
Merged-chr5-96860150-1	chr5	96859650	96860650	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-61122.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.58	9.68	9.25	9.45	4.2	9.65	1.06	4.86	3.75
Merged-chr10-25289665-1	chr10	25289165	25290165	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_018747, exon 2 of 8)	5' UTR (NM_018747, exon 2 of 8)	9498.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	21.74	18.89	8.32	23.62	14.93	29.74	12.67	7.96	6.25
Merged-chr18-62252482-3	chr18	62251989	62252989	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-71715.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	22.88	41.47	24.05	18.89	30.79	14.47	48.58	35.82	22.48
Merged-chr11-85792560-2	chr11	85792052	85793052	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_077059, exon 5 of 5)	non-coding (NR_077059, exon 5 of 5)	-16872.0	NR_046194	78420.0	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	6.86	4.61	9.25	16.87	13.06	19.29	5.28	1.33	3.12
Merged-chr18-4922074-1	chr18	4921574	4922574	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	109588.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	37.76	47.46	47.17	49.93	72.31	61.09	47.53	39.35	41.84
Merged-chr14-51913484-1	chr14	51912984	51913984	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145959)	promoter-TSS (NM_001145959)	4.0	NM_001145959	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	13.73	0.92	3.7	8.77	0.93	4.82	4.22	2.21	2.5
Merged-chr1-131689946-2	chr1	131689429	131690429	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145509, intron 1 of 5)	intron (NM_145509, intron 1 of 5)	1234.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	102.97	111.97	63.82	79.62	57.85	69.13	143.64	128.67	98.68
Merged-chr1-154274914-1	chr1	154274414	154275414	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-18008.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	4.58	3.23	4.62	7.42	2.8	8.04	3.17	3.1	9.37
Merged-chr9-66876757-2	chr9	66876248	66877248	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	-42042.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	35.47	29.95	27.75	72.19	38.72	33.76	24.29	15.92	8.74
Merged-chr11-68063429-2	chr11	68062928	68063928	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	96970.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	13.16	12.9	3.7	12.82	7.46	16.08	5.28	11.05	6.87
Merged-chr1-80715743-1	chr1	80715243	80716243	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	42810.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	9.72	11.52	6.47	19.57	8.86	9.65	12.67	13.27	16.24
Merged-chr14-69249355-1	chr14	69248855	69249855	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026331, intron 2 of 3)	intron (NM_026331, intron 2 of 3)	35748.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	12.01	6.45	7.4	15.52	12.13	18.49	11.62	4.86	9.37
Merged-chr5-62815961-2	chr5	62815468	62816468	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 1 of 8)	intron (NM_001170705, intron 1 of 8)	2145.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	7.44	4.61	0.0	1.35	6.53	3.22	8.45	2.65	1.25
Merged-chr3-88835134-2	chr3	88834650	88835650	+	778.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001242372)	promoter-TSS (NM_001242372)	-81.0	NM_027389	76022.0	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	33.75	33.64	29.6	0.67	0.0	0.0	51.75	51.29	29.35
Merged-chr9-30448610-2	chr9	30448122	30449122	+	778.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028874, intron 8 of 10)	intron (NM_028874, intron 8 of 10)	21293.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.57	3.69	0.0	2.7	2.8	1.61	7.39	3.54	3.75
Merged-chr17-35867711-3	chr17	35867209	35868209	+	778.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 1 of 3)	exon (NM_175242, exon 1 of 3)	1094.0	NM_175242	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	45.76	63.59	103.59	44.53	33.12	94.85	59.15	83.13	86.18
Merged-chr10-24625241-3	chr10	24624747	24625747	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29805.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	3.43	4.61	5.55	5.4	5.6	1.61	3.17	3.54	1.87
Merged-chr17-27165594-3	chr17	27165115	27166115	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	2149.0	NM_173027	271424.0	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	9.72	17.05	7.4	12.82	4.2	19.29	14.79	11.05	11.87
Merged-chr7-120833311-3	chr7	120832817	120833817	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9514.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	10.3	9.68	12.95	7.42	4.67	4.82	14.79	8.84	16.24
Merged-chr17-73107400-3	chr17	73106895	73107895	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177968)	promoter-TSS (NM_001177968)	-590.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	260.86	295.36	155.39	190.27	182.4	149.5	198.56	216.22	128.65
Merged-chr5-66114312-3	chr5	66113797	66114797	+	778.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	-16118.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	65.21	91.24	87.87	74.89	71.84	91.63	110.9	110.98	79.32
Merged-chr3-146100163-2	chr3	146099673	146100673	+	778.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 3 of 22)	MTEb|LTR|ERVL-MaLR	7863.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	8.58	3.23	0.0	4.72	2.8	1.61	2.11	1.77	5.62
Merged-chr11-34071471-2	chr11	34070956	34071956	+	778.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 7 of 20)	intron (NM_010696, intron 7 of 20)	24528.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	38.33	42.85	50.87	35.76	29.86	52.25	42.25	36.26	36.85
Merged-chr17-43581231-3	chr17	43580751	43581751	+	778.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10258.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	57.78	60.82	42.55	113.35	66.24	65.11	81.33	77.82	59.95
Merged-chr5-123132629-4	chr5	123132175	123133175	+	778.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175092)	promoter-TSS (NM_175092)	-46.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	11.44	10.14	1.85	11.47	3.27	4.82	5.28	3.54	5.0
Merged-chr2-30135079-3	chr2	30134577	30135577	+	778.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1331.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	117.27	104.14	111.92	119.43	85.84	132.63	171.1	169.79	73.07
Merged-chr12-102704390-3	chr12	102703787	102704787	+	778.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	582.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	52.63	34.56	61.05	32.39	43.85	53.05	57.03	47.75	56.21
Merged-chr17-26640448-2	chr17	26639960	26640960	+	778.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 8 of 9)	intron (NM_026170, intron 8 of 9)	-35936.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	10.87	7.37	1.85	24.96	24.72	27.33	9.51	5.75	11.24
Merged-chr15-53107747-2	chr15	53107256	53108256	+	778.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	238427.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	2.86	3.69	3.7	2.7	6.53	7.23	4.22	4.86	6.25
Merged-chr18-36792386-2	chr18	36791890	36792890	+	778.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001305627, exon 12 of 12)	3' UTR (NM_001305627, exon 12 of 12)	-1533.0	NM_025594	66492.0	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	13.73	19.35	8.32	26.99	18.66	18.49	9.51	11.05	10.62
Merged-chr12-87415014-2	chr12	87414548	87415548	+	778.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	22709.0	NR_037228	100526546.0		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	98.97	113.81	51.8	116.05	95.17	85.2	129.91	136.19	64.33
Merged-chr5-115489013-3	chr5	115488551	115489551	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4567.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	495.97	540.04	296.91	387.29	384.4	184.87	390.79	489.92	172.99
Merged-chr9-21155007-3	chr9	21154501	21155501	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-5095.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	8.58	7.83	3.7	8.77	9.33	6.43	6.34	7.07	8.12
Merged-chr5-105749285-1	chr5	105748785	105749785	+	778.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	(A)n|Simple_repeat|Simple_repeat	48475.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	2.29	5.53	0.0	0.67	0.93	3.22	4.22	5.31	7.49
Merged-chr8-124278076-1	chr8	124277576	124278576	+	778.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	46682.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	16.02	11.52	16.65	15.52	14.0	14.47	2.11	0.44	2.5
Merged-chr13-23581015-1	chr13	23580515	23581515	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175654)	promoter-TSS (NM_175654)	-587.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	29.75	32.72	16.65	27.66	24.26	16.08	27.46	32.28	26.23
Merged-chr7-113172624-1	chr7	113172124	113173124	+	778.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30609.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	5.72	8.75	6.47	12.82	10.26	40.99	20.07	10.17	13.12
Merged-chr19-6090550-1	chr19	6090050	6091050	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026410, intron 5 of 5)	intron (NM_026410, intron 5 of 5)	-3869.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	39.47	36.86	43.47	27.66	12.6	26.53	17.96	27.41	18.74
Merged-chr3-144204668-1	chr3	144204168	144205168	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010723, intron 1 of 4)	CpG	587.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	89.24	106.9	87.87	62.07	55.51	72.34	69.71	62.35	74.32
Merged-chr1-79760245-3	chr1	79759728	79760728	+	778.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	1541.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	32.61	29.95	17.57	30.36	20.99	13.66	39.08	34.05	13.12
Merged-chr2-32534518-3	chr2	32534042	32535042	+	778.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153560)	promoter-TSS (NM_153560)	-817.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	43.48	39.17	16.65	53.3	62.98	46.62	63.37	57.48	34.35
Merged-chr4-151995051-3	chr4	151994505	151995505	+	778.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172705, intron 1 of 3)	CpG	1174.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	15.45	11.52	34.22	16.87	6.53	13.66	21.12	7.07	9.99
Merged-chr17-87613554-2	chr17	87613049	87614049	+	778.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22430.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.58	2.3	1.85	8.1	13.53	6.43	3.17	3.98	1.25
Merged-chr13-9027467-3	chr13	9026971	9027971	+	778.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31459.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	13.16	7.37	12.95	10.12	13.53	4.82	9.51	9.29	11.24
Merged-chr1-171118446-3	chr1	171117947	171118947	+	778.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3214.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	18.31	5.99	3.7	11.47	1.87	1.61	3.17	3.54	13.74
Merged-chr11-96400033-2	chr11	96399502	96400502	+	778.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34244.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	8.58	15.21	1.85	44.53	42.45	57.87	16.9	16.36	9.99
Merged-chr2-21141872-2	chr2	21141401	21142401	+	778.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	63464.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.57	3.69	3.7	6.75	4.2	5.63	5.28	4.86	2.5
Merged-chr14-102615802-2	chr14	102615302	102616302	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366830.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	26.89	27.19	23.12	24.29	30.79	29.74	41.19	37.14	31.85
Merged-chr12-70753117-2	chr12	70752582	70753582	+	778.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72432.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	14.87	11.52	1.85	13.49	10.26	6.43	1.06	0.88	3.12
Merged-chr13-12251945-2	chr13	12251430	12252430	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 2 of 32)	intron (NM_001081128, intron 2 of 32)	6183.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	26.89	15.21	14.8	22.27	16.79	8.04	24.29	22.11	11.24
Merged-chr6-128753992-2	chr6	128753490	128754490	+	778.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30944.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	12.01	13.82	2.77	12.82	12.13	6.43	7.39	9.73	11.24
Merged-chr3-58978278-3	chr3	58977785	58978785	+	778.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28693.0	NM_177855	329650.0	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	6.29	3.69	1.85	11.47	4.2	4.82	5.28	3.1	5.0
Merged-chr4-136355179-3	chr4	136354679	136355679	+	778.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43581.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	21.74	47.0	42.55	37.11	45.72	40.99	28.52	28.74	26.85
Merged-chr4-150257395-3	chr4	150256902	150257902	+	778.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20078.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.0	1.84	1.85	6.07	1.4	4.82	2.11	0.88	0.0
Merged-chr12-73889768-2	chr12	73889278	73890278	+	778.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11546.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	14.87	12.44	28.67	19.57	11.66	24.92	20.07	12.38	11.87
Merged-chr16-92441101-1	chr16	92440601	92441601	+	778.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	25068.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	40.04	42.39	24.05	56.68	56.45	59.48	17.96	25.2	24.98
Merged-chr3-129969522-3	chr3	129969039	129970039	+	778.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025779, intron 1 of 7)	intron (NM_025779, intron 1 of 7)	667.0	NM_025779	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	7.44	4.15	12.95	18.89	18.19	20.9	5.28	3.1	5.0
Merged-chr2-43739629-3	chr2	43739155	43740155	+	778.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9169.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	40.04	39.17	20.35	35.76	38.72	23.31	33.8	49.08	35.6
Merged-chr7-95791075-3	chr7	95790569	95791569	+	778.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-380175.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	5.72	5.07	0.0	8.77	5.13	16.08	3.17	5.75	0.62
Merged-chr4-148675242-2	chr4	148674722	148675722	+	778.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31905.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	24.03	20.27	24.05	10.8	6.06	12.86	45.42	35.37	29.98
Merged-chr16-89872502-3	chr16	89871980	89872980	+	778.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009384, intron 6 of 27)	intron (NM_009384, intron 6 of 27)	-54128.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	92.67	91.24	74.0	118.75	111.96	66.71	114.07	106.12	61.2
Merged-chr11-78712787-3	chr11	78712281	78713281	+	778.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-15356.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	17.16	4.61	7.4	24.29	20.53	4.02	39.08	18.57	5.0
Merged-chr11-115177978-2	chr11	115177462	115178462	+	778.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 3 of 5)	intron (NM_012030, intron 3 of 5)	9354.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	7.44	1.84	12.95	12.14	6.53	14.47	14.79	6.19	6.25
Merged-chr4-88032814-4	chr4	88032312	88033312	+	778.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 1 of 10)	CpG	595.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	10.87	4.15	6.47	16.87	10.73	10.45	15.84	12.82	5.62
Merged-chr10-8513471-3	chr10	8513008	8514008	+	778.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	Lx5c|LINE|L1	5317.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	36.61	36.4	29.6	20.24	16.33	27.33	31.69	41.56	24.36
Merged-chr14-55194012-3	chr14	55193491	55194491	+	778.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28016.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	35.47	27.65	14.8	22.94	22.39	20.9	35.91	32.72	23.11
Merged-chr15-99031968-6	chr15	99031471	99032471	+	778.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009448, intron 1 of 3)	intron (NM_009448, intron 1 of 3)	2080.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	50.34	36.86	37.0	62.75	30.79	42.6	45.42	47.31	28.73
Merged-chr5-96923630-3	chr5	96923058	96924058	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 2 of 2)	intron (NR_131152, intron 2 of 2)	2286.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	43.48	68.66	86.95	56.68	48.05	67.52	48.58	42.45	48.09
Merged-chr17-74328317-1	chr17	74327817	74328817	+	778.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4373.0	NM_024428	66310.0	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	5.15	1.38	0.0	2.02	1.87	0.0	0.0	0.88	3.75
Merged-chr14-121956573-1	chr14	121956073	121957073	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183031, intron 1 of 1)	intron (NM_183031, intron 1 of 1)	8620.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	3.43	1.38	3.7	5.4	8.4	1.61	2.11	7.52	4.37
Merged-chr18-49705639-2	chr18	49705142	49706142	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170960, intron 2 of 3)	Lx9|LINE|L1	49959.0	NM_001170960	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	7.44	11.52	8.32	10.8	9.8	6.43	8.45	20.34	6.25
Merged-chr7-110248815-1	chr7	110248315	110249315	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 2 of 11)	intron (NM_009302, intron 2 of 11)	27112.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	14.87	17.05	27.75	13.49	11.66	16.08	13.73	12.82	13.74
Merged-chr10-25291714-1	chr10	25291214	25292214	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	7449.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	9.72	14.75	15.72	28.34	15.86	28.13	1.06	3.54	3.75
Merged-chr17-43568154-1	chr17	43567654	43568654	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013737)	promoter-TSS (NM_013737)	-297.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	107.55	96.76	87.87	109.98	104.5	159.95	50.7	43.33	64.33
Merged-chr4-129877711-1	chr4	129877211	129878211	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-28515.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	152.74	172.79	144.29	157.88	139.02	139.86	210.18	197.65	156.13
Merged-chr12-59032258-2	chr12	59031762	59032762	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	18871.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	8.01	4.15	0.0	4.05	1.87	3.22	0.0	1.33	2.5
Merged-chr18-26905801-1	chr18	26905301	26906301	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1151644.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.29	1.84	2.77	3.37	2.33	0.0	1.06	1.33	5.62
Merged-chr16-32159159-3	chr16	32158667	32159667	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347181, intron 1 of 2)	intron (NM_001347181, intron 1 of 2)	6427.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	28.6	18.43	34.22	21.59	14.0	37.78	21.12	16.36	43.72
Merged-chr12-79525756-2	chr12	79525267	79526267	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	228416.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	13.16	14.28	11.1	20.24	13.06	10.45	7.39	15.48	3.75
Merged-chr11-46833490-2	chr11	46832985	46833985	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178759, intron 5 of 8)	intron (NM_178759, intron 5 of 8)	22686.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	52.63	66.35	65.67	57.35	40.12	71.54	84.49	57.04	60.58
Merged-chr17-72962192-1	chr17	72961692	72962692	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43887.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	13.73	6.91	5.55	5.4	7.0	8.84	12.67	6.19	3.75
Merged-chr4-4596104-2	chr4	4595591	4596591	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66633.0	NM_001277919	622019.0	Mm.246123	NM_001277919		Gm11780	-	predicted gene 11780	protein-coding	1.72	0.46	1.85	6.07	11.66	9.65	4.22	8.84	1.25
Merged-chr6-135295729-2	chr6	135295214	135296214	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14670.0	NM_029595	76400.0	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	27.46	23.96	12.95	66.8	103.1	97.26	4.22	7.52	6.87
Merged-chr7-80067410-1	chr7	80066910	80067910	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045695, intron 2 of 2)	intron (NR_045695, intron 2 of 2)	7847.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	26.89	34.1	46.25	28.34	22.86	39.39	21.12	19.46	11.87
Merged-chr15-25227745-1	chr15	25227245	25228245	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186019.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	8.01	4.61	9.25	2.02	6.06	8.04	10.56	5.75	8.74
Merged-chr5-140636848-2	chr5	140636325	140637325	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	12206.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	9.72	8.75	16.65	15.52	13.06	14.47	10.56	9.29	12.49
Merged-chr13-120150777-1	chr13	120150277	120151277	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039648, intron 1 of 2)	intron (NM_001039648, intron 1 of 2)	10531.0	NM_001039648	639910.0	Mm.424428	NM_001039648	ENSMUSG00000096323	Gm20767	-	predicted gene, 20767	protein-coding	4.58	6.91	3.7	4.05	1.4	4.82	4.22	2.21	2.5
Merged-chr7-16204994-1	chr7	16204494	16205494	+	778.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027883, intron 9 of 16)	intron (NM_027883, intron 9 of 16)	16999.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	4.0	0.92	0.0	6.75	2.33	3.22	3.17	3.54	5.62
Merged-chr15-57695002-1	chr15	57694502	57695502	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_199449, exon 1 of 4)	5' UTR (NM_199449, exon 1 of 4)	335.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	356.39	502.25	275.64	446.66	670.37	423.6	342.2	386.01	189.23
Merged-chr4-97936547-2	chr4	97936063	97937063	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	158937.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.43	3.23	0.92	4.72	7.0	2.41	7.39	1.77	5.0
Merged-chr10-80967509-2	chr10	80967017	80968017	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	33848.0	NM_001038655	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	6.86	2.3	1.85	2.02	1.4	8.84	3.17	1.33	3.75
Merged-chr8-75105938-1	chr8	75105438	75106438	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19A|LTR|ERVK	-3571.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.01	3.69	8.32	4.05	4.67	7.23	2.11	3.1	10.62
Merged-chr9-94703622-2	chr9	94703144	94704144	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	33752.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	23.45	25.8	28.67	25.64	23.79	51.44	47.53	30.95	29.98
Merged-chr11-97986492-3	chr11	97985990	97986990	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028199)	promoter-TSS (NM_028199)	-44.0	NM_001163608	72324.0	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	38.33	16.59	20.35	29.01	20.06	22.51	34.85	10.61	6.25
Merged-chr5-25526276-1	chr5	25525776	25526776	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	1.72	3.23	5.55	6.07	6.53	4.82	7.39	0.44	5.0
Merged-chr5-125379227-1	chr5	125378727	125379727	+	778.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	10790.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	9.15	2.76	5.55	5.4	3.27	9.65	4.22	3.98	7.49
Merged-chr11-85689485-1	chr11	85688985	85689985	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	30259.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	13.16	14.28	6.47	15.52	14.46	11.25	11.62	9.29	6.25
Merged-chr5-96804515-2	chr5	96804014	96805014	+	778.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013470, intron 2 of 12)	MER21C|LTR|ERVL	11129.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	6.29	4.61	7.4	6.07	10.73	9.65	11.62	7.07	3.75
Merged-chr18-60209297-3	chr18	60208802	60209802	+	777.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-2775.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	36.04	35.94	37.0	22.94	13.06	40.19	26.4	26.53	16.86
Merged-chr10-44342123-3	chr10	44341631	44342631	+	777.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	intron (NM_001314013, intron 5 of 6)	-17545.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	17.16	23.5	22.2	20.92	16.79	12.86	34.85	32.72	19.36
Merged-chr7-143624791-3	chr7	143624292	143625292	+	777.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175649, intron 1 of 7)	intron (NM_175649, intron 1 of 7)	3053.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	27.46	35.48	14.8	22.27	34.06	16.88	16.9	21.22	16.24
Merged-chr3-62492767-3	chr3	62492274	62493274	+	777.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 8 of 24)	intron (NM_028136, intron 8 of 24)	14214.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	13.16	15.67	7.4	8.1	13.06	6.43	17.96	13.27	12.49
Merged-chr5-43248026-2	chr5	43247518	43248518	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177379, intron 3 of 10)	L3|LINE|CR1	-12664.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	18.31	15.21	19.42	29.69	26.12	29.74	33.8	37.58	16.24
Merged-chr3-121329783-2	chr3	121329300	121330300	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	38060.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	20.59	14.28	12.95	18.22	13.53	12.06	25.35	23.88	16.24
Merged-chr4-86428380-2	chr4	86427873	86428873	+	777.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029967)	TTS (NM_029967)	129930.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	16.59	18.89	16.65	22.27	25.66	41.8	20.07	16.8	19.98
Merged-chr6-37441146-3	chr6	37440641	37441641	+	777.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	1007.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	40.62	36.4	13.87	29.01	30.79	23.31	33.8	42.01	21.23
Merged-chr10-62182669-1	chr10	62182169	62183169	+	777.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11558.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	6.86	2.76	2.77	5.4	0.47	4.82	4.22	0.88	7.49
Merged-chr13-95960803-3	chr13	95960316	95961316	+	777.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-68894.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	9.15	6.45	0.0	25.64	22.86	14.47	188.0	163.6	76.19
Merged-chr4-120405147-3	chr4	120404666	120405666	+	777.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159630)	promoter-TSS (NM_001159630)	-115.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	88.1	68.66	101.74	77.59	46.18	66.71	73.93	53.5	43.09
Merged-chr14-33393469-3	chr14	33392938	33393938	+	777.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310452, intron 4 of 10)	MTD|LTR|ERVL-MaLR	17586.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	62.93	62.67	49.02	43.18	44.78	41.8	94.0	111.43	49.96
Merged-chr15-100635375-2	chr15	100634878	100635878	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001285414, exon 1 of 3)	5' UTR (NM_001285414, exon 1 of 3)	181.0	NM_001285414	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	21.17	29.03	24.97	33.74	27.52	36.97	41.19	41.12	16.86
Merged-chr17-13740965-2	chr17	13740455	13741455	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-19586.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	6.29	2.3	9.25	1.35	1.4	11.25	2.11	0.0	5.0
Merged-chr10-99261150-2	chr10	99260658	99261658	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2073.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	95.53	125.33	71.22	87.71	147.88	100.47	137.3	180.4	68.7
Merged-chr13-37365657-1	chr13	37365157	37366157	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	RMER15|LTR|ERVL	20312.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	10.87	12.44	9.25	12.14	6.53	20.09	14.79	13.27	3.75
Merged-chr1-157248254-2	chr1	157247759	157248759	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-139579.0	NM_001305063	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.0	1.84	0.0	6.07	5.13	4.82	2.11	3.98	2.5
Merged-chr17-87378499-2	chr17	87377998	87378998	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	49243.0	NM_029298	75467.0	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	15.45	11.06	7.4	8.77	11.66	14.47	5.28	3.98	6.87
Merged-chr9-105122043-1	chr9	105121543	105122543	+	777.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9762.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	79.52	85.25	56.42	109.3	80.71	112.53	45.42	31.39	18.74
Merged-chr9-41069094-2	chr9	41068596	41069596	+	777.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	10410.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	15.45	20.74	16.65	16.19	10.73	13.66	13.73	7.52	8.74
Merged-chr9-95497121-2	chr9	95496629	95497629	+	777.733337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 2 of 25)	Lx9|LINE|L1	14867.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	25.17	39.17	31.45	37.78	31.26	28.94	53.87	47.31	29.35
Merged-chr11-85844284-3	chr11	85843749	85844749	+	777.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11634.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	14.87	5.53	15.72	20.92	14.93	17.68	10.56	1.77	2.5
Merged-chr13-30695376-3	chr13	30694867	30695867	+	777.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134068, intron 3 of 7)	intron (NM_134068, intron 3 of 7)	35308.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	58.92	84.32	23.12	64.77	55.51	24.92	33.8	34.93	29.35
Merged-chr6-83584250-1	chr6	83583750	83584750	+	777.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_078345, intron 7 of 7)	intron (NR_078345, intron 7 of 7)	-11746.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	10.87	11.98	11.1	10.8	6.06	9.65	6.34	11.05	5.0
Merged-chr7-127129822-3	chr7	127129343	127130343	+	777.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7814.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	9.15	6.45	7.4	16.87	7.0	16.88	33.8	22.55	20.61
Merged-chr11-5491229-2	chr11	5490714	5491714	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29427.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	16.02	9.68	7.4	13.49	19.13	13.66	19.01	7.07	10.62
Merged-chr9-119343298-2	chr9	119342778	119343778	+	777.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357516, intron 3 of 10)	intron (NM_001357516, intron 3 of 10)	1984.0	NM_001357516	113868.0	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	23.45	10.14	13.87	16.19	7.0	28.13	7.39	6.19	2.5
Merged-chr8-45452859-2	chr8	45452371	45453371	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-42252.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	1.14	4.15	0.0	2.02	2.8	4.82	4.22	2.65	5.62
Merged-chr18-9508565-2	chr18	9508024	9509024	+	777.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58370.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.59	8.75	7.4	31.04	18.66	6.43	22.18	21.22	6.25
Merged-chr10-8342817-2	chr10	8342315	8343315	+	777.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	176010.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	19.45	25.8	26.82	31.04	13.06	40.99	30.63	20.78	21.86
Merged-chr14-20370983-3	chr14	20370486	20371486	+	777.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024512, intron 7 of 13)	PB1D10|SINE|Alu	17924.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	13.16	16.13	13.87	10.12	15.86	18.49	8.45	26.09	5.0
Merged-chr10-59310845-3	chr10	59310350	59311350	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12446.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	45.76	62.67	76.77	48.58	45.72	61.09	51.75	41.12	38.1
Merged-chr15-25859649-3	chr15	25859131	25860131	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	16333.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.3	7.37	8.32	8.1	9.33	10.45	11.62	12.82	13.12
Merged-chr9-78177076-3	chr9	78176604	78177604	+	777.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040401, intron 3 of 3)	intron (NR_040401, intron 3 of 3)	1190.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	81.23	120.26	59.2	101.88	115.69	107.71	99.28	142.82	41.84
Merged-chr10-118140371-2	chr10	118139881	118140881	+	777.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1406.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	5.72	9.68	14.8	5.4	4.67	0.0	5.28	0.44	1.25
Merged-chr14-61968667-2	chr14	61968172	61969172	+	777.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-286299.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.58	13.82	14.8	14.17	5.6	17.68	3.17	6.19	13.74
Merged-chr13-48862109-2	chr13	48861608	48862608	+	777.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	ORR1F|LTR|ERVL-MaLR	8777.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	7.44	5.07	4.62	3.37	4.2	4.82	7.39	0.44	1.25
Merged-chr8-47702517-3	chr8	47702023	47703023	+	777.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11408.0	NM_001359133	70925.0	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	10.87	11.52	14.8	9.45	5.6	14.47	23.24	22.99	6.87
Merged-chr5-136218140-3	chr5	136217633	136218633	+	777.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302938)	TTS (NM_001302938)	-19179.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	25.74	16.13	6.47	43.86	26.12	18.49	34.85	19.46	21.86
Merged-chr16-44764815-2	chr16	44764397	44765397	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021325)	promoter-TSS (NM_021325)	-839.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	15.45	25.8	13.87	16.19	20.99	26.53	13.73	17.69	18.74
Merged-chr19-56726189-3	chr19	56725696	56726696	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3824.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	105.26	85.71	66.6	93.79	59.71	68.32	113.01	105.68	65.58
Merged-chr17-23610698-2	chr17	23610199	23611199	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289484, exon 7 of 7)	exon (NM_001289484, exon 7 of 7)	9873.0	NM_001289482	332221.0	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	1.72	0.92	3.7	1.35	1.87	1.61	1.06	0.0	1.25
Merged-chr3-9403008-3	chr3	9402503	9403503	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015499)	promoter-TSS (NR_015499)	-75.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.58	4.61	7.4	8.1	4.67	0.0	2.11	0.44	0.62
Merged-chr5-67295843-1	chr5	67295343	67296343	+	777.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11112.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	10.87	11.98	18.5	8.1	10.26	10.45	57.03	49.08	47.46
Merged-chr9-13847820-2	chr9	13847329	13848329	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20113.0	NM_176836	72826.0	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	9.72	13.82	5.55	9.45	7.46	14.47	6.34	8.84	8.74
Merged-chr7-43672445-2	chr7	43671964	43672964	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145582, intron 1 of 2)	intron (NM_145582, intron 1 of 2)	433.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	69.79	72.8	60.12	66.8	62.05	92.44	133.08	104.35	68.7
Merged-chr18-69664731-1	chr18	69664231	69665231	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-260828.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	15.45	12.9	12.02	16.87	12.13	22.51	22.18	11.05	9.37
Merged-chr15-63932863-2	chr15	63932366	63933366	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 11 of 11)	intron (NM_001360037, intron 11 of 11)	18405.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	9.72	7.83	5.55	5.4	7.46	6.43	5.28	3.1	7.49
Merged-chr8-24519482-1	chr8	24518982	24519982	+	777.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34496.0	NR_035483									2.29	1.84	5.55	5.4	6.06	8.04	5.28	8.4	5.0
Merged-chr1-80637329-3	chr1	80636855	80637855	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27997.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	58.35	92.16	40.7	70.85	71.38	61.09	82.38	76.05	58.71
Merged-chr8-72361453-2	chr8	72360964	72361964	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007944, intron 21 of 23)	MTC|LTR|ERVL-MaLR	42402.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	9.72	9.22	7.4	6.75	7.46	16.88	8.45	4.86	7.49
Merged-chr5-92098496-3	chr5	92097946	92098946	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-14702.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	81.8	53.91	53.65	69.5	64.84	69.13	100.34	75.61	54.33
Merged-chr2-178498148-2	chr2	178497654	178498654	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67639.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	14.87	12.9	7.4	14.84	7.0	8.84	11.62	3.98	3.12
Merged-chrX-56474185-3	chrX	56473702	56474702	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	(T)n|Simple_repeat|Simple_repeat	19363.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	4.58	4.61	7.4	6.75	6.06	4.82	3.17	6.63	8.74
Merged-chr9-21864653-1	chr9	21864153	21865153	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-12018.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	10.87	6.91	12.95	9.45	8.4	15.27	6.34	7.52	3.75
Merged-chr13-12475547-2	chr13	12475046	12476046	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133643, exon 6 of 6)	3' UTR (NM_133643, exon 6 of 6)	-13808.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	6.86	5.53	7.4	16.19	5.13	12.86	12.67	9.73	8.12
Merged-chr10-21997056-2	chr10	21996508	21997508	+	777.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161850, exon 8 of 12)	exon (NM_001161850, exon 8 of 12)	2342.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	34.9	13.36	28.67	44.53	22.86	26.53	35.91	38.91	33.72
Merged-chr3-9753865-1	chr3	9753365	9754365	+	777.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	79814.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	5.15	7.83	11.1	23.62	19.13	16.08	10.56	8.84	3.75
Merged-chr9-62933142-3	chr9	62932631	62933631	+	777.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	47748.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	102.97	99.99	61.97	105.26	77.91	61.89	100.34	116.29	46.84
Merged-chr19-21571331-3	chr19	21570755	21571755	+	777.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81536.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	4.58	4.15	5.55	3.37	1.87	0.0	3.17	2.21	1.25
Merged-chr11-105496849-3	chr11	105496328	105497328	+	777.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40093.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	20.59	16.59	20.35	13.49	8.4	14.47	9.51	18.13	10.62
Merged-chr5-122109974-3	chr5	122109469	122110469	+	777.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183307, intron 11 of 12)	intron (NM_183307, intron 11 of 12)	9018.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	12.59	10.6	21.27	12.82	16.79	24.92	8.45	6.63	5.0
Merged-chr15-50745541-3	chr15	50745033	50746033	+	777.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	143516.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	7.44	12.9	3.7	12.82	14.0	17.68	6.34	4.42	8.74
Merged-chr5-118468208-2	chr5	118467723	118468723	+	777.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92496.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	6.86	3.23	4.62	12.82	5.6	4.82	9.51	3.1	5.0
Merged-chr2-32647471-2	chr2	32646973	32647973	+	777.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146348, intron 1 of 14)	intron (NM_001146348, intron 1 of 14)	878.0	NM_001146348	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	24.6	22.58	23.12	20.92	14.46	32.96	8.45	7.07	5.62
Merged-chr2-90655672-3	chr2	90655164	90656164	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21551.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	20.59	14.75	9.25	16.19	6.06	14.47	5.28	3.54	14.99
Merged-chr4-99947268-3	chr4	99946734	99947734	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	17783.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	17.16	12.9	11.1	12.14	11.2	20.09	12.67	19.9	6.25
Merged-chr17-43334322-3	chr17	43333823	43334823	+	777.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26108.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	8.01	7.37	1.85	7.42	2.33	8.84	3.17	5.75	6.25
Merged-chr10-59333646-2	chr10	59333135	59334135	+	777.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	RSINE1|SINE|B4	10339.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	37.76	31.79	29.6	25.64	33.59	27.33	46.47	30.51	21.86
Merged-chr14-55736486-3	chr14	55736003	55737003	+	777.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	9181.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	205.94	179.71	138.74	200.39	117.09	172.01	215.46	282.54	136.15
Merged-chr19-59026006-6	chr19	59025607	59026607	+	777.3444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	49962.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	80.66	69.12	62.9	67.47	58.31	34.56	80.27	106.56	43.72
Merged-chr9-85449693-2	chr9	85449177	85450177	+	777.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122527.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.58	5.07	7.4	5.4	3.73	6.43	4.22	3.1	6.87
Merged-chr1-160246096-2	chr1	160245602	160246602	+	777.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038621, intron 4 of 8)	intron (NM_001038621, intron 4 of 8)	-33210.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	6.29	2.3	3.7	10.8	7.0	6.43	7.39	5.31	5.0
Merged-chr3-97868285-3	chr3	97867787	97868787	+	777.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	CpG	20420.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	16.59	8.29	5.55	16.87	9.8	4.82	6.34	5.31	8.12
Merged-chr16-8836844-1	chr16	8836344	8837344	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081400, intron 2 of 3)	intron (NM_001081400, intron 2 of 3)	6744.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	20.02	10.6	5.55	16.87	6.06	25.72	23.24	13.71	8.74
Merged-chr12-13491952-1	chr12	13491452	13492452	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	135694.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	3.43	5.53	3.7	7.42	5.6	3.22	7.39	2.21	2.5
Merged-chr11-96860759-2	chr11	96860263	96861263	+	777.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019877, intron 8 of 8)	intron (NM_019877, intron 8 of 8)	10370.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	8.58	1.84	1.85	2.7	1.87	4.82	8.45	2.21	3.75
Merged-chr2-30796641-3	chr2	30796121	30797121	+	777.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028487, intron 4 of 6)	intron (NR_028487, intron 4 of 6)	5116.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.15	3.23	0.0	5.4	1.87	8.04	5.28	0.44	3.75
Merged-chr8-35469151-2	chr8	35468640	35469640	+	777.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026067, exon 7 of 7)	exon (NM_026067, exon 7 of 7)	26393.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	2.86	11.52	0.0	5.4	5.6	3.22	2.11	3.1	2.5
Merged-chr8-125559216-2	chr8	125558731	125559731	+	777.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10632.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	66.93	80.18	46.25	87.04	41.52	54.66	66.54	66.77	66.2
Merged-chr13-99238917-2	chr13	99238404	99239404	+	777.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 3 of 4)	intron (NM_001004149, intron 3 of 4)	54081.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	7.44	18.89	14.8	17.54	12.6	12.86	10.56	9.29	13.12
Merged-chr8-34808216-6	chr8	34807657	34808657	+	777.236084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176933, exon 1 of 4)	exon (NM_176933, exon 1 of 4)	547.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	17.73	6.91	9.25	13.49	6.06	4.82	15.84	7.52	5.0
Merged-chrY-1285992-3	chrY	1285537	1286537	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012008, intron 1 of 16)	intron (NM_012008, intron 1 of 16)	576.0	NM_012008	26900.0	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	283.17	428.99	157.24	254.37	315.83	188.89	243.98	327.65	118.04
Merged-chr1-140351838-3	chr1	140351321	140352321	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081027, intron 2 of 27)	Lx8|LINE|L1	105564.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	8.01	7.37	0.0	4.05	4.2	4.82	6.34	3.1	2.5
Merged-chr1-157019891-3	chr1	157019430	157020430	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-80304.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	46.34	50.23	33.3	120.1	73.71	84.4	45.42	41.56	39.97
Merged-chr11-87751752-3	chr11	87751258	87752258	+	777.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5106.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	135.0	127.64	142.44	101.88	98.43	131.82	88.72	93.3	84.94
Merged-chr1-152761958-3	chr1	152761460	152762460	+	777.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	4345.0	NM_001346119	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	5.15	3.69	3.7	4.05	3.73	1.61	3.17	3.1	4.37
Merged-chr1-167343881-1	chr1	167343381	167344381	+	777.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6110.0	NM_019993	56752.0	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	6.86	4.61	7.4	6.75	6.53	8.04	2.11	1.77	0.0
Merged-chr6-91509564-3	chr6	91509069	91510069	+	777.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	6319.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	6.86	4.15	10.17	8.77	4.2	3.22	7.39	4.42	11.24
Merged-chr16-30787741-3	chr16	30787186	30788186	+	777.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	187963.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	76.66	94.46	83.25	97.83	49.92	126.19	98.23	83.57	95.55
Merged-chr12-110816993-2	chr12	110816489	110817489	+	777.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 4 of 11)	B3A|SINE|B2	23950.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	12.01	5.07	11.1	12.82	9.33	20.09	10.56	5.75	5.0
Merged-chr7-58859123-3	chr7	58858614	58859614	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	200912.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	10.87	3.23	1.85	4.05	4.2	6.43	4.22	2.65	8.12
Merged-chr11-61231562-3	chr11	61231061	61232061	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138545, intron 9 of 10)	intron (NR_138545, intron 9 of 10)	22819.0	NM_001331112	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	2.29	1.84	5.55	4.72	2.33	1.61	4.22	1.33	1.25
Merged-chr1-165765288-3	chr1	165764827	165765827	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	B4|SINE|B4	1569.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	160.75	207.81	137.82	190.27	197.8	171.21	180.61	211.8	104.92
Merged-chr5-143044141-3	chr5	143043628	143044628	+	777.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	68892.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	85.81	87.55	58.27	41.83	61.58	48.23	42.25	64.56	71.2
Merged-chr4-43819030-2	chr4	43818548	43819548	+	777.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2385.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	11.44	18.89	12.95	15.52	21.93	14.47	11.62	11.5	13.74
Merged-chr17-27975493-2	chr17	27974978	27975978	+	777.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 2 of 24)	intron (NM_181413, intron 2 of 24)	66172.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	12.59	14.28	11.1	29.01	18.66	24.11	2.11	3.54	7.49
Merged-chr11-79161313-3	chr11	79160900	79161900	+	777.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-14927.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	11.44	8.75	5.55	14.17	9.8	1.61	14.79	8.4	6.25
Merged-chr17-26931958-2	chr17	26931460	26932460	+	777.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053173, intron 10 of 10)	intron (NM_053173, intron 10 of 10)	-1167.0	NM_001302397	21652.0	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	12.59	12.44	1.85	8.1	6.53	8.04	7.39	7.07	5.0
Merged-chr4-35164459-2	chr4	35163964	35164964	+	777.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6980.0	NM_178061	214944.0	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	6.29	3.69	8.32	10.8	5.13	23.31	10.56	8.84	3.75
Merged-chr15-83563538-3	chr15	83563046	83564046	+	777.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009775)	promoter-TSS (NM_009775)	-27.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	38.33	20.74	50.87	27.66	27.06	28.13	24.29	12.38	16.86
Merged-chr16-12473737-2	chr16	12473247	12474247	+	777.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-337643.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	5.72	10.14	7.4	22.94	14.46	18.49	19.01	21.67	18.11
Merged-chr3-18051688-2	chr3	18051177	18052177	+	777.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2648.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.57	3.23	0.0	2.7	2.8	8.04	0.0	3.1	2.5
Merged-chrX-94289177-3	chrX	94288688	94289688	+	777.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	14614.0	NR_106133	102466238.0		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA	3.43	2.3	1.85	0.67	0.93	4.02	3.17	0.88	1.25
Merged-chr1-136581621-3	chr1	136581124	136582124	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43277.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	30.89	38.71	26.82	31.04	27.99	24.92	61.26	63.23	39.35
Merged-chr1-171610176-1	chr1	171609676	171610676	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2766.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	8.58	5.07	3.7	2.02	0.0	0.0	5.28	3.1	5.0
Merged-chr5-120088720-1	chr5	120088220	120089220	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27793.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	4.58	3.23	8.32	1.35	2.8	3.22	3.17	0.44	0.62
Merged-chr2-163643565-1	chr2	163643065	163644065	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012032, intron 1 of 9)	PB1D7|SINE|Alu	-1285.0	NR_028113	68386.0	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	66.93	87.09	79.55	88.39	75.11	68.32	94.0	99.93	73.69
Merged-chr2-124669427-1	chr2	124668927	124669927	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15846.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	11.44	17.97	37.0	18.89	8.4	23.31	13.73	18.57	17.49
Merged-chr3-122090757-1	chr3	122090257	122091257	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	46297.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	2.29	9.22	3.7	6.75	3.73	6.43	5.28	4.86	5.0
Merged-chr12-3307667-1	chr12	3307167	3308167	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	2302.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	18.31	35.02	29.6	24.29	23.79	24.92	48.58	33.16	29.35
Merged-chr11-21013286-1	chr11	21012786	21013786	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78038.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.44	15.21	3.7	7.42	7.0	3.22	9.51	7.07	2.5
Merged-chr9-42123697-1	chr9	42123197	42124197	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011436, intron 1 of 47)	intron (NM_011436, intron 1 of 47)	600.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	6.29	3.23	3.7	3.37	5.13	9.65	9.51	6.63	6.25
Merged-chr7-81195667-2	chr7	81195169	81196169	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR1a|LTR|Gypsy	-18135.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	1.14	4.15	3.7	11.47	3.73	17.68	10.56	4.86	8.12
Merged-chr4-6428858-1	chr4	6428358	6429358	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010945, intron 9 of 30)	intron (NM_010945, intron 9 of 30)	25413.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	11.44	5.99	5.55	3.37	2.33	4.02	11.62	6.63	5.62
Merged-chr11-33274513-1	chr11	33274013	33275013	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110973, intron 23 of 28)	L2|LINE|L2	-70925.0	NM_019916	27140.0	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	1.14	0.0	2.77	4.05	5.13	3.22	2.11	0.88	5.0
Merged-chr7-83842815-1	chr7	83842315	83843315	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41526.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	7.44	5.99	1.85	10.12	5.6	4.82	6.34	2.21	2.5
Merged-chr9-107770481-1	chr9	107769981	107770981	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153190, exon 1 of 24)	non-coding (NR_153190, exon 1 of 24)	521.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	248.27	255.27	145.22	200.39	225.32	186.48	256.65	297.58	176.12
Merged-chr14-27172313-1	chr14	27171813	27172813	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	MTC|LTR|ERVL-MaLR	28320.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.58	4.15	3.7	6.07	2.33	3.22	1.06	1.77	1.25
Merged-chr15-13371527-1	chr15	13371027	13372027	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-197852.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	5.72	4.61	3.7	8.1	3.73	0.8	7.39	4.42	13.12
Merged-chr17-85519027-1	chr17	85518527	85519527	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99369.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	5.15	1.84	0.0	0.67	2.33	0.0	1.06	0.44	2.5
Merged-chr10-67640860-1	chr10	67640360	67641360	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-68901.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	5.15	3.23	5.55	4.05	4.2	5.63	9.51	7.52	3.75
Merged-chr8-4213574-2	chr8	4213058	4214058	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	3754.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	6.86	3.69	0.0	4.05	1.87	1.61	3.17	2.65	1.25
Merged-chr9-92250151-1	chr9	92249651	92250651	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011636)	promoter-TSS (NM_011636)	-43.0	NM_011636	22038.0	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	38.33	35.48	16.65	58.03	61.58	48.23	25.35	19.01	8.74
Merged-chr2-153704409-1	chr2	153703909	153704909	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-36878.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	1.14	0.46	3.7	11.47	5.6	4.82	27.46	22.55	6.25
Merged-chr2-128703670-1	chr2	128703170	128704170	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	Lx8|LINE|L1	4755.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	26.31	30.41	39.77	43.18	31.72	44.21	32.74	24.76	23.11
Merged-chr13-107842559-1	chr13	107842059	107843059	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	47505.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	53.2	49.76	30.52	42.51	29.86	27.33	51.75	37.58	23.11
Merged-chr4-133759579-1	chr4	133759079	133760079	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5968.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	7.44	3.23	6.47	2.7	3.73	1.61	3.17	3.54	2.5
Merged-chr16-92698172-1	chr16	92697672	92698672	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009821)	promoter-TSS (NM_009821)	-843.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	114.41	142.84	94.35	79.62	124.56	85.2	95.06	114.08	94.3
Merged-chr12-35534335-2	chr12	35533774	35534774	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	715.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	41.76	39.17	15.72	45.88	40.59	32.15	24.29	15.03	9.37
Merged-chr1-191167997-1	chr1	191167497	191168497	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3180.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	8.58	0.92	2.77	8.1	0.0	5.63	6.34	4.42	2.5
Merged-chr18-55204224-1	chr18	55203724	55204724	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-211633.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	13.16	22.58	19.42	14.84	20.53	16.88	2.11	1.77	4.37
Merged-chr14-75148433-1	chr14	75147933	75148933	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	12008.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	52.06	32.25	39.77	43.18	42.92	22.51	48.58	50.85	23.73
Merged-chr3-103738450-3	chr3	103737966	103738966	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	-465.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	6.29	5.53	5.55	12.14	7.0	7.23	23.24	12.38	11.24
Merged-chr2-104996483-1	chr2	104995983	104996983	+	777.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177600, intron 17 of 17)	intron (NM_177600, intron 17 of 17)	20544.0	NM_145380	98221.0	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	4.58	4.61	8.32	10.12	4.67	14.47	5.28	6.63	3.75
Merged-chr13-55527918-1	chr13	55527418	55528418	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013739, intron 1 of 4)	intron (NM_013739, intron 1 of 4)	620.0	NM_013739	27261.0	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	20.02	23.5	14.8	29.69	14.93	34.56	27.46	23.88	24.98
Merged-chr1-51944951-1	chr1	51944451	51945451	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28973.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.14	1.38	0.0	2.7	2.8	6.43	3.17	3.98	2.5
Merged-chr4-3975215-2	chr4	3974711	3975711	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35787.0	NR_104356	66433.0	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	2.29	2.3	0.0	1.35	3.27	7.23	2.11	0.0	7.49
Merged-chr16-13644681-1	chr16	13644181	13645181	+	777.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358452, intron 11 of 22)	L1MC4|LINE|L1	23489.0	NM_001358452	74108.0	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	5.72	6.45	1.85	5.4	6.06	6.43	5.28	4.86	2.5
Merged-chr16-92399654-1	chr16	92399154	92400154	+	777.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	424.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	244.84	278.77	123.94	371.77	379.74	266.05	293.62	343.12	174.24
Merged-chr8-79392848-2	chr8	79392352	79393352	+	776.966675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	6616.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	28.6	42.39	35.15	43.18	25.19	35.37	36.97	48.2	23.11
Merged-chr17-50123948-2	chr17	50123404	50124404	+	776.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	Charlie1|DNA|hAT-Charlie	66593.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	13.73	12.9	0.0	15.52	14.93	13.66	8.45	5.31	3.75
Merged-chr9-64018981-4	chr9	64018431	64019431	+	776.945251	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3128.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	12.59	14.75	16.65	18.22	17.73	29.74	38.02	25.2	15.61
Merged-chr10-62337366-3	chr10	62336876	62337876	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	3045.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	29.75	30.87	48.1	18.22	29.39	36.17	38.02	30.07	25.61
Merged-chr9-41102336-3	chr9	41101843	41102843	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	B1F|SINE|Alu	-22837.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	18.88	20.27	16.65	28.34	17.26	16.88	43.3	63.23	24.98
Merged-chr14-118713524-3	chr14	118713046	118714046	+	776.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-7327.0	NM_001033336	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	9.72	2.76	0.0	4.05	4.2	3.22	2.11	5.75	5.0
Merged-chr6-72374976-2	chr6	72374467	72375467	+	776.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016872, intron 1 of 2)	intron (NM_016872, intron 1 of 2)	5501.0	NM_001080742	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	44.05	24.88	14.8	48.58	31.72	21.7	41.19	32.72	14.36
Merged-chr5-41563604-2	chr5	41563114	41564114	+	776.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	144077.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	9.72	2.3	0.0	0.67	2.8	0.8	4.22	0.0	6.25
Merged-chr2-102755082-3	chr2	102754565	102755565	+	776.894409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 6 of 10)	intron (NM_001077514, intron 6 of 10)	-8305.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	70.36	63.13	48.1	64.1	32.19	48.23	78.16	49.52	37.47
Merged-chr10-24468850-3	chr10	24468360	24469360	+	776.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-126582.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	12.01	16.59	7.4	14.17	13.06	15.27	29.57	19.01	18.74
Merged-chr15-6011837-3	chr15	6011338	6012338	+	776.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	32866.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	38.33	43.77	11.1	52.63	32.19	28.13	39.08	39.35	29.35
Merged-chr19-18617692-3	chr19	18617188	18618188	+	776.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	14125.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	24.6	35.94	45.32	30.36	30.32	38.58	40.14	28.3	33.72
Merged-chr3-135851776-2	chr3	135851279	135852279	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026228, intron 3 of 8)	Tigger20a|DNA|TcMar-Tigger	-11510.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	7.44	6.91	5.55	12.14	8.4	8.04	2.11	4.86	3.12
Merged-chr3-126623825-2	chr3	126623408	126624408	+	776.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	26957.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	93.82	96.76	77.7	82.32	66.24	60.28	98.23	93.74	49.34
Merged-chr15-38655401-2	chr15	38654909	38655909	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6495.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	6.29	8.29	0.0	4.05	6.06	0.0	6.34	3.54	6.25
Merged-chr4-59450371-2	chr4	59449868	59450868	+	776.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11735.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	21.74	15.67	18.5	10.8	22.39	12.06	8.45	13.71	7.49
Merged-chr4-95046065-2	chr4	95045562	95046562	+	776.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6160.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	10.87	1.84	0.0	3.37	0.0	6.43	3.17	2.21	0.62
Merged-chr7-127077119-3	chr7	127076630	127077630	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14306.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	14.3	9.68	18.5	20.92	9.8	12.86	51.75	33.6	11.24
Merged-chr12-25197937-3	chr12	25197427	25198427	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68753.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	25.17	18.43	16.65	29.01	16.33	24.11	44.36	22.99	18.11
Merged-chr3-96102243-3	chr3	96101759	96102759	+	776.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2268.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	16.59	13.82	15.72	4.72	7.93	5.63	12.67	11.5	9.37
Merged-chr5-103719968-3	chr5	103719458	103720458	+	776.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34204.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	21.17	19.81	31.45	16.19	14.0	7.23	32.74	32.28	7.49
Merged-chr12-40680701-3	chr12	40680203	40681203	+	776.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 12 of 52)	B3|SINE|B2	234650.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	17.16	13.36	20.35	20.24	10.73	19.29	25.35	13.71	8.74
Merged-chr11-116885417-3	chr11	116884931	116885931	+	776.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31431.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	2.29	3.23	0.0	8.77	7.93	3.22	5.28	2.65	3.75
Merged-chr17-42857716-2	chr17	42857244	42858244	+	776.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 1 of 17)	intron (NM_009847, intron 1 of 17)	18680.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	16.59	21.2	28.67	20.24	7.93	22.51	53.87	34.49	36.22
Merged-chr10-121630349-3	chr10	121629871	121630871	+	776.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4039.0	NM_001359618	73192.0	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	14.3	17.97	20.35	26.99	21.93	20.09	26.4	26.09	25.61
Merged-chr12-108638005-3	chr12	108637405	108638405	+	776.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	2152.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	173.9	216.11	135.97	152.49	140.89	172.01	157.37	205.61	133.02
Merged-chr5-142401950-2	chr5	142401445	142402445	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199068, exon 1 of 9)	exon (NM_199068, exon 1 of 9)	448.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	92.1	57.14	61.05	109.3	48.05	102.08	140.47	60.13	26.85
Merged-chr6-72851755-1	chr6	72851255	72852255	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 3 of 6)	intron (NM_019715, intron 3 of 6)	47537.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	11.44	5.07	11.1	8.1	6.53	4.02	7.39	7.07	11.87
Merged-chr11-33147922-1	chr11	33147422	33148422	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_102395)	promoter-TSS (NR_102395)	-522.0	NR_102395	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	2.86	2.76	5.55	1.35	3.27	3.22	2.11	1.77	1.25
Merged-chr10-94904805-3	chr10	94904299	94905299	+	776.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 4 of 30)	intron (NM_018797, intron 4 of 30)	39779.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	2.29	4.61	7.4	3.37	2.33	3.22	4.22	1.33	1.25
Merged-chr16-29989400-2	chr16	29988885	29989885	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10261.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	38.33	36.4	16.65	34.41	36.39	40.99	65.48	53.5	25.61
Merged-chr10-127350754-1	chr10	127350254	127351254	+	776.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008382, exon 2 of 2)	exon (NM_008382, exon 2 of 2)	1094.0	NM_008382	16326.0	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	11.44	4.15	0.92	9.45	0.93	1.61	2.11	2.21	5.0
Merged-chr18-82464859-3	chr18	82464347	82465347	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10276.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	9.15	4.61	7.4	4.05	0.0	16.08	4.22	3.54	1.87
Merged-chr8-46151758-3	chr8	46151252	46152252	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11899.0	NM_025747	66756.0	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430	cilia and flagella associated protein 97	protein-coding	72.65	56.68	62.9	72.19	48.05	35.37	84.49	60.58	43.72
Merged-chr5-41525152-3	chr5	41524645	41525645	+	776.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16B_MM|LTR|ERVK	182546.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	30.89	46.54	26.82	13.49	8.86	12.86	95.06	99.49	49.34
Merged-chr5-148707549-2	chr5	148707033	148708033	+	776.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34307.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.43	2.76	3.7	0.67	1.87	3.22	8.45	3.1	6.25
Merged-chr10-20349668-3	chr10	20349162	20350162	+	776.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	MTC|LTR|ERVL-MaLR	1843.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	37.18	26.26	23.12	31.04	19.59	21.7	27.46	29.63	24.36
Merged-chr14-75136815-3	chr14	75136243	75137243	+	776.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	318.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	29.17	36.86	10.17	38.46	31.72	32.15	38.02	26.53	19.98
Merged-chr7-112252358-1	chr7	112251858	112252858	+	776.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 2 of 25)	intron (NM_001193305, intron 2 of 25)	26522.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	4.0	5.07	1.85	2.02	5.13	4.82	1.06	2.65	2.5
Merged-chr1-144002027-1	chr1	144001527	144002527	+	776.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009061, intron 4 of 4)	intron (NM_009061, intron 4 of 4)	2122.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	110.41	130.86	68.45	80.29	83.51	66.71	87.66	87.11	48.71
Merged-chr13-95834745-2	chr13	95834250	95835250	+	776.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	L1M4|LINE|L1	57172.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.01	7.37	3.7	6.75	6.53	3.22	4.22	2.21	9.99
Merged-chr11-114706459-2	chr11	114705963	114706963	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 6 of 13)	intron (NM_053273, intron 6 of 13)	-20949.0	NM_001034878	432611.0	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728|b2b3405Clo	dynein, axonemal, intermediate chain 2	protein-coding	3.43	2.3	0.0	5.4	3.73	0.0	11.62	8.4	5.0
Merged-chr10-17579942-2	chr10	17579454	17580454	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143274.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	11.44	6.91	4.62	13.49	9.8	17.68	7.39	11.05	18.74
Merged-chr1-72105676-2	chr1	72105171	72106171	+	776.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100476.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.57	3.69	1.85	21.59	16.33	6.43	35.91	16.36	11.24
Merged-chr8-128517877-2	chr8	128517377	128518377	+	776.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	158636.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	6.29	4.15	0.92	6.07	9.33	8.04	6.34	1.77	9.99
Merged-chr19-10022636-3	chr19	10022137	10023137	+	776.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	4443.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	54.35	46.54	90.65	56.0	50.38	65.11	68.65	47.75	36.22
Merged-chr5-143052090-2	chr5	143051590	143052590	+	776.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	60930.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	36.61	34.1	48.1	25.64	19.59	33.76	24.29	22.99	23.73
Merged-chr12-41313611-3	chr12	41313097	41314097	+	776.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	172460.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	10.3	7.83	3.7	11.47	8.4	8.04	10.56	7.52	9.37
Merged-chr3-28081248-3	chr3	28080747	28081747	+	776.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 15 of 25)	intron (NM_008875, intron 15 of 25)	97076.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	11.44	10.14	5.55	6.75	9.8	9.65	8.45	9.29	5.0
Merged-chr6-146578759-3	chr6	146578255	146579255	+	776.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138757)	promoter-TSS (NM_138757)	844.0	NM_026218	67529.0	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	84.09	99.53	71.22	78.27	83.04	83.59	111.96	116.73	64.33
Merged-chr7-143474936-3	chr7	143474392	143475392	+	776.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001042760)	promoter-TSS (NM_001042760)	-224.0	NM_001042760	18400.0	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	5.15	2.76	0.0	5.4	0.47	4.82	2.11	2.21	0.0
Merged-chr7-114347223-3	chr7	114346716	114347716	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029437, intron 1 of 3)	intron (NR_029437, intron 1 of 3)	67945.0	NR_029437	71045.0	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	6.86	7.83	12.95	14.17	5.13	9.65	3.17	9.29	0.62
Merged-chr8-71561566-2	chr8	71561077	71562077	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145598, exon 2 of 2)	3' UTR (NM_145598, exon 2 of 2)	-2706.0	NM_001100462	434325.0	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	13.16	5.07	1.85	3.37	4.2	0.8	2.11	2.21	2.5
Merged-chr17-50735593-2	chr17	50735092	50736092	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285991, exon 23 of 23)	3' UTR (NM_001285991, exon 23 of 23)	36911.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	5.72	2.76	5.55	4.05	2.33	4.82	17.96	7.96	9.99
Merged-chr2-32487390-3	chr2	32486934	32487934	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-35964.0	NM_146118	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	9.15	5.53	0.0	8.77	4.2	0.0	7.39	10.17	11.24
Merged-chr15-41784340-2	chr15	41783850	41784850	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-4645.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	12.01	4.61	12.95	14.84	9.33	11.25	7.39	6.63	5.0
Merged-chr7-55961718-3	chr7	55961222	55962222	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015495)	promoter-TSS (NR_015495)	771.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	217.95	256.2	187.77	191.62	247.72	172.81	260.88	320.57	172.99
Merged-chr9-77921475-1	chr9	77920975	77921975	+	776.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	4110.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	16.59	9.68	9.25	6.75	3.27	4.82	14.79	10.61	5.0
Merged-chr11-4836926-1	chr11	4836426	4837426	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	intron (NM_010898, intron 1 of 15)	-3791.0	NM_001252253	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	13.73	6.45	4.62	4.05	3.73	7.23	5.28	6.63	3.75
Merged-chr6-128798422-3	chr6	128797921	128798921	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9780.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.72	11.98	7.4	18.22	13.06	20.09	15.84	16.36	9.37
Merged-chr15-34356837-2	chr15	34356336	34357336	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256161, intron 1 of 3)	hAT-N1_Mam|DNA|hAT?	1036.0	NM_001256161	77358.0	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	12.01	12.9	18.5	8.1	5.6	8.84	7.39	6.19	7.49
Merged-chr3-87350546-1	chr3	87350046	87351046	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7335.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	89.81	104.6	56.42	107.28	94.23	114.94	146.81	175.54	98.05
Merged-chr6-15816689-2	chr6	15816186	15817186	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96025.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.86	4.15	3.7	3.37	5.6	4.82	11.62	0.88	1.25
Merged-chr4-148082425-1	chr4	148081925	148082925	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009642, intron 2 of 4)	intron (NM_009642, intron 2 of 4)	5639.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	6.86	8.29	12.02	7.42	3.27	6.43	9.51	1.77	2.5
Merged-chr8-79038394-1	chr8	79037894	79038894	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	9957.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	8.58	5.99	12.02	16.87	10.73	30.54	7.39	5.75	4.37
Merged-chr1-135682437-2	chr1	135681941	135682941	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-37622.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	8.01	6.45	1.85	8.1	5.13	8.04	6.34	2.65	10.62
Merged-chr3-59208195-3	chr3	59207678	59208678	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028808, exon 2 of 2)	3' UTR (NM_028808, exon 2 of 2)	2704.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	90.96	141.92	98.97	107.28	90.5	97.26	126.74	142.82	84.31
Merged-chr15-93245756-2	chr15	93245268	93246268	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033275, intron 6 of 7)	intron (NM_001033275, intron 6 of 7)	29411.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	2.86	4.15	5.55	5.4	3.27	4.82	0.0	1.33	2.5
Merged-chr18-62174836-2	chr18	62174352	62175352	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5129.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	24.6	29.49	23.12	29.69	18.66	32.15	21.12	38.03	26.23
Merged-chr6-71494594-1	chr6	71494094	71495094	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001308303, exon 1 of 4)	5' UTR (NM_001308303, exon 1 of 4)	717.0	NM_001308303	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	155.6	149.29	167.42	180.82	138.09	153.52	215.46	154.32	105.55
Merged-chr19-45075625-2	chr19	45075160	45076160	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362397)	promoter-TSS (NM_001362397)	419.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	45.19	35.02	43.47	39.13	37.79	74.75	45.42	36.26	39.35
Merged-chr1-154256979-2	chr1	154256445	154257445	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040629)	promoter-TSS (NR_040629)	-39.0	NR_040629	78112.0	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	8.58	4.15	1.85	11.47	6.06	8.04	1.06	5.75	5.0
Merged-chr3-84820464-3	chr3	84819957	84820957	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	MER58A|DNA|hAT-Charlie	4880.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	20.59	15.21	7.4	20.24	17.26	9.65	17.96	19.9	19.36
Merged-chr5-142907356-2	chr5	142906825	142907825	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007393)	promoter-TSS (NM_007393)	-571.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	129.86	137.31	159.09	62.75	61.58	75.56	158.43	193.23	168.62
Merged-chr19-5804773-1	chr19	5804273	5805273	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2101.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	82.95	114.27	75.85	82.32	74.64	111.73	119.35	121.6	75.57
Merged-chr5-72330508-2	chr5	72330015	72331015	+	776.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122756, intron 15 of 21)	intron (NM_001122756, intron 15 of 21)	127172.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	7.44	10.14	12.95	13.49	12.13	12.06	21.12	12.38	8.74
Merged-chr1-86007982-3	chr1	86007477	86008477	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13965.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	1.72	5.99	5.55	4.72	0.93	3.22	5.28	3.54	2.5
Merged-chr11-83580987-3	chr11	83580495	83581495	+	776.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1066.0	NR_036453	100504464.0	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	51.48	29.03	18.5	26.99	12.6	28.13	15.84	16.36	14.99
Merged-chr18-34119192-3	chr18	34118674	34119674	+	776.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101810.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	44.62	48.38	39.77	45.21	31.26	45.82	77.1	101.7	37.47
Merged-chr3-97929121-3	chr3	97928622	97929622	+	776.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1051.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	38.9	28.57	23.12	12.82	15.39	28.94	19.01	26.53	11.24
Merged-chrX-35931040-5	chrX	35930519	35931519	+	776.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	42187.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	55.49	59.44	25.9	41.16	35.45	30.54	38.02	38.91	29.35
Merged-chr10-87016562-3	chr10	87016081	87017081	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8639.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	6.29	3.69	1.85	5.4	1.87	1.61	7.39	3.98	1.25
Merged-chr18-49980475-3	chr18	49980060	49981060	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	1133.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	25.74	14.28	16.65	13.49	7.46	7.23	15.84	8.84	8.12
Merged-chr10-81135297-3	chr10	81134813	81135813	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010731)	promoter-TSS (NM_010731)	-958.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	167.04	170.03	103.59	101.21	88.64	156.74	159.48	183.94	134.9
Merged-chr7-43668327-3	chr7	43667810	43668810	+	776.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-3721.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	148.73	120.26	75.85	118.75	82.11	73.14	180.61	176.42	111.79
Merged-chr2-155019451-2	chr2	155018937	155019937	+	776.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5867.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	24.03	19.35	1.85	7.42	6.06	1.61	10.56	16.36	7.49
Merged-chr6-39259359-3	chr6	39258855	39259855	+	776.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52582.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	34.9	34.56	33.3	31.04	43.85	53.85	47.53	42.45	32.48
Merged-chr2-27749954-3	chr2	27749458	27750458	+	776.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290481, intron 5 of 9)	intron (NM_001290481, intron 5 of 9)	39375.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	48.62	35.02	47.17	44.53	29.86	37.78	36.97	29.63	26.23
Merged-chr5-122503014-3	chr5	122502528	122503528	+	776.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009722)	promoter-TSS (NM_009722)	-803.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	18.31	15.67	7.4	35.76	23.79	31.35	24.29	17.69	18.11
Merged-chr10-4391974-3	chr10	4391443	4392443	+	776.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	14.3	21.66	12.95	12.14	10.73	22.51	27.46	24.32	8.12
Merged-chrX-106013415-2	chrX	106012919	106013919	+	776.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1520.0	NM_025952	67075.0	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	12.59	7.37	16.65	10.8	7.46	12.86	10.56	10.61	4.37
Merged-chr5-3905673-2	chr5	3905169	3906169	+	776.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11736.0	NM_172135	545725.0	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	2.86	4.61	7.4	2.7	0.93	1.61	3.17	3.1	3.75
Merged-chr6-100336108-3	chr6	100335609	100336609	+	776.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48751.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	8.58	3.69	9.25	8.1	1.87	1.61	8.45	5.75	1.25
Merged-chr2-164656046-2	chr2	164655536	164656536	+	776.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039501)	promoter-TSS (NM_001039501)	-10.0	NM_001039501	629756.0	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120	WAP four-disulfide core domain 10	protein-coding	2.86	4.15	1.85	1.35	1.87	6.43	2.11	1.77	1.25
Merged-chr17-31040712-3	chr17	31040222	31041222	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16972.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	86.95	99.53	74.0	178.8	139.02	145.49	125.69	154.76	43.09
Merged-chr13-69810366-3	chr13	69809869	69810869	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138596, intron 1 of 3)	intron (NM_138596, intron 1 of 3)	487.0	NM_138596	28077.0	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	24.03	31.33	34.22	43.18	28.46	33.76	33.8	28.3	26.23
Merged-chr4-118083782-3	chr4	118083282	118084282	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	intron (NM_001285520, intron 2 of 11)	51164.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	5.15	3.69	1.85	1.35	4.67	1.61	1.06	1.33	13.74
Merged-chr14-66931757-1	chr14	66931257	66932257	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20549.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	10.87	5.53	12.02	10.8	14.93	9.65	29.57	25.2	16.24
Merged-chr15-55097306-1	chr15	55096806	55097806	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6815.0	NM_001355594	72107.0	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	2.29	2.76	1.85	2.02	0.93	0.0	2.11	2.21	3.12
Merged-chr17-78895579-3	chr17	78895081	78896081	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 3 of 6)	intron (NM_001163625, intron 3 of 6)	11411.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	5.72	4.15	4.62	9.45	5.6	3.22	5.28	5.31	3.75
Merged-chr19-18646609-1	chr19	18646109	18647109	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145497, intron 8 of 8)	B3A|SINE|B2	14593.0	NM_145497	225994.0	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	93.82	46.08	40.7	110.65	98.43	78.77	51.75	45.99	17.49
Merged-chr1-95316177-1	chr1	95315677	95316677	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	intron (NM_026321, intron 1 of 2)	2549.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	37.76	56.68	29.6	36.43	35.45	36.17	26.4	27.41	24.36
Merged-chr4-126141078-1	chr4	126140578	126141578	+	776.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001145827)	TTS (NM_001145827)	-6925.0	NM_172145	230752.0	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	18.31	13.82	14.8	18.22	20.99	45.01	17.96	13.71	14.36
Merged-chr19-56375713-3	chr19	56375197	56376197	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008733, intron 11 of 41)	B4A|SINE|B4	14341.0	NM_198059	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	10.3	5.99	3.7	18.22	11.66	13.66	11.62	7.52	14.99
Merged-chr1-95762414-3	chr1	95761902	95762902	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45884.0	NR_040479	75381.0	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	1.14	5.07	1.85	1.35	3.73	1.61	3.17	3.54	5.0
Merged-chr2-155373467-3	chr2	155372970	155373970	+	776.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-8386.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	18.88	19.35	16.65	24.96	19.13	22.51	26.4	19.46	16.24
Merged-chr12-71981447-2	chr12	71980951	71981951	+	776.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 22 of 25)	intron (NM_026102, intron 22 of 25)	89540.0	NM_181752	238252.0	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	2.86	1.38	0.0	2.02	4.2	11.25	7.39	3.98	2.5
Merged-chr7-130867454-3	chr7	130866941	130867941	+	776.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133942, intron 1 of 9)	intron (NM_133942, intron 1 of 9)	1717.0	NM_001346515	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	14.3	17.97	8.32	16.87	9.8	6.43	20.07	20.78	9.99
Merged-chr4-155095456-3	chr4	155094967	155095967	+	776.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 6 of 12)	intron (NM_001356327, intron 6 of 12)	8863.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	6.29	4.15	1.85	6.07	4.67	4.82	6.34	3.98	1.87
Merged-chr15-100080978-2	chr15	100080478	100081478	+	776.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 3 of 3)	RSINE1|SINE|B4	42314.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	141.3	157.59	120.24	111.33	117.09	118.16	152.09	160.95	91.18
Merged-chr6-90575561-2	chr6	90575067	90576067	+	776.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356412, intron 12 of 22)	intron (NM_001356412, intron 12 of 22)	24774.0	NM_027406	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	1.72	0.92	0.0	2.7	1.4	6.43	2.11	2.21	0.0
Merged-chr13-16011929-2	chr13	16011415	16012415	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008380)	promoter-TSS (NM_008380)	64.0	NM_008380	16323.0	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	21.17	11.06	12.95	10.8	13.53	16.08	11.62	9.29	2.5
Merged-chr8-85801552-3	chr8	85801048	85802048	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028007, intron 6 of 17)	B3|SINE|B2	39401.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	25.74	21.2	14.8	19.57	19.59	16.08	16.9	24.76	18.11
Merged-chr6-134094818-3	chr6	134094323	134095323	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	59123.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	20.02	12.9	1.85	22.27	13.06	13.66	15.84	6.19	9.37
Merged-chr6-97456846-2	chr6	97456330	97457330	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	2456.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	306.62	329.92	205.34	340.73	306.5	219.43	283.06	330.74	154.88
Merged-chr10-120848917-2	chr10	120848415	120849415	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	intron (NM_177092, intron 4 of 6)	-8714.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	10.87	8.75	2.77	16.19	10.73	8.04	3.17	5.75	1.87
Merged-chr2-44926539-2	chr2	44926108	44927108	+	776.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-64986.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	314.63	339.14	242.34	323.86	309.3	256.41	325.31	351.08	191.11
Merged-chr5-121712661-5	chr5	121712203	121713203	+	776.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	CpG	1094.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	97.25	63.13	104.52	78.94	37.79	56.27	123.57	58.37	34.97
Merged-chr12-10689162-2	chr12	10688650	10689650	+	776.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	242762.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.57	3.23	0.0	1.35	1.87	3.22	0.0	5.31	1.25
Merged-chr9-99143104-3	chr9	99142586	99143586	+	776.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2875.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	18.31	16.13	14.8	12.82	8.86	8.04	20.07	7.07	13.12
Merged-chr3-54611776-3	chr3	54611273	54612273	+	776.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81042.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	12.59	8.29	7.4	5.4	4.67	8.04	20.07	6.19	8.74
Merged-chr2-32876897-1	chr2	32876397	32877397	+	776.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146119, intron 1 of 13)	intron (NM_146119, intron 1 of 13)	763.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	14.3	10.14	10.17	20.92	19.59	31.35	11.62	3.98	7.49
Merged-chr14-40979197-3	chr14	40978687	40979687	+	776.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12291.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	4.0	3.23	5.55	1.35	1.87	0.0	0.0	4.42	5.62
Merged-chr6-127149792-3	chr6	127149357	127150357	+	776.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040275, intron 1 of 1)	intron (NR_040275, intron 1 of 1)	231.0	NR_040273	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	236.83	166.8	181.29	40.48	28.92	18.49	22.18	13.27	5.0
Merged-chr10-118101293-2	chr10	118100796	118101796	+	776.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40491.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	156.74	124.41	43.47	165.98	115.69	106.9	146.81	140.61	76.19
Merged-chr7-55711106-2	chr7	55710610	55711610	+	776.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57074.0	NM_001310740	233274.0	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	1.14	4.15	3.7	4.05	1.4	0.0	4.22	0.0	7.49
Merged-chrX-167302218-2	chrX	167301710	167302710	+	776.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28361.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	5.15	5.53	5.55	8.77	5.6	13.66	3.17	4.86	13.74
Merged-chr9-64447754-2	chr9	64447257	64448257	+	776.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 1 of 24)	intron (NM_001134399, intron 1 of 24)	62131.0	NM_001134399	214058.0	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	5.15	2.3	0.92	12.82	6.06	6.43	9.51	3.54	2.5
Merged-chr4-106865575-3	chr4	106865054	106866054	+	776.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45916.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	32.61	27.65	37.92	33.74	25.66	50.64	33.8	17.69	27.48
Merged-chr4-33251919-2	chr4	33251415	33252415	+	776.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3128.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	18.88	22.58	24.97	12.14	14.93	19.29	6.34	16.36	11.24
Merged-chr6-100675103-3	chr6	100674486	100675486	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-3829.0	NM_181590	72171.0	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	27.46	29.95	15.72	33.74	36.39	26.53	29.57	34.05	31.23
Merged-chr15-97059843-3	chr15	97059365	97060365	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3909.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	1.72	1.84	2.77	4.05	4.2	3.22	4.22	2.65	9.37
Merged-chr2-31726935-3	chr2	31726437	31727437	+	776.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-33002.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	34.32	17.05	39.77	31.04	21.93	32.96	20.07	18.13	24.36
Merged-chr4-145037784-3	chr4	145037283	145038283	+	776.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	144646.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	47.48	56.68	48.1	50.6	50.85	58.68	34.85	44.22	29.35
Merged-chr2-71378219-2	chr2	71377698	71378698	+	776.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10644.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	6.29	15.21	20.35	27.66	27.99	21.7	73.93	84.01	33.72
Merged-chr4-9135957-3	chr4	9135453	9136453	+	776.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-133340.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	1.72	4.15	3.7	4.72	5.6	3.22	4.22	0.44	6.25
Merged-chr8-108615977-3	chr8	108615469	108616469	+	776.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-31292.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	9.15	10.14	7.4	16.87	14.0	7.23	13.73	8.84	6.87
Merged-chr1-173694502-3	chr1	173694030	173695030	+	776.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162938, intron 5 of 6)	ERVB2_1-I_MM-int|LTR|ERVK	20850.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	13.73	5.53	1.85	4.72	12.6	4.82	14.79	12.82	6.87
Merged-chr17-27820184-1	chr17	27819684	27820684	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001271511, exon 1 of 4)	exon (NM_001271511, exon 1 of 4)	358.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	269.44	191.23	247.89	209.16	173.07	222.65	252.43	186.15	143.02
Merged-chr8-108320646-2	chr8	108320153	108321153	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	264024.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	5.15	4.15	5.55	8.77	8.4	5.63	3.17	4.42	3.75
Merged-chr19-47507213-1	chr19	47506713	47507713	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 9 of 9)	intron (NM_175360, intron 9 of 9)	-5769.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	9.72	11.52	6.47	8.77	2.8	6.43	12.67	2.65	2.5
Merged-chr19-32279709-2	chr19	32279202	32280202	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-68689.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	9.15	6.91	1.85	6.75	7.93	4.02	4.22	1.77	5.0
Merged-chr18-52768339-1	chr18	52767839	52768839	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001199154, exon 1 of 11)	5' UTR (NM_001199154, exon 1 of 11)	195.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.15	1.84	3.7	3.37	1.87	4.82	7.39	0.88	2.5
Merged-chr13-102052399-1	chr13	102051899	102052899	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-284182.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.72	2.76	1.85	2.7	4.67	3.22	5.28	11.5	7.49
Merged-chr15-62448541-1	chr15	62448041	62449041	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-229090.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.15	2.76	1.85	1.35	1.4	4.82	3.17	3.1	0.0
Merged-chr3-133111920-1	chr3	133111420	133112420	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027927)	TTS (NM_027927)	-19881.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	4.0	4.61	1.85	6.07	6.06	9.65	4.22	2.21	6.87
Merged-chr15-58020325-1	chr15	58019825	58020825	+	776.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13969.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	40.62	25.8	29.6	56.68	16.33	45.82	68.65	49.96	27.48
Merged-chr2-132007652-1	chr2	132007152	132008152	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	22336.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	46.91	56.68	44.4	83.66	68.11	106.9	44.36	46.87	56.83
Merged-chr7-120843510-2	chr7	120842987	120843987	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001267710)	promoter-TSS (NM_001267710)	-113.0	NM_001267710	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	41.19	26.26	28.67	37.11	32.19	27.33	34.85	15.92	10.62
Merged-chr18-64430256-1	chr18	64429756	64430756	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58842.0	NM_007998	14151.0	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	2.86	4.61	0.0	6.07	6.06	0.0	1.06	3.98	5.62
Merged-chr11-70516550-1	chr11	70516050	70517050	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1934.0	NM_001013607	327956.0	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	6.29	4.61	0.0	4.72	3.27	2.41	4.22	1.33	0.0
Merged-chr1-192081232-1	chr1	192080732	192081732	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	11367.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	14.3	11.98	15.72	22.27	10.26	24.11	11.62	13.71	6.25
Merged-chr13-20112803-1	chr13	20112303	20113303	+	776.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	22296.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.14	4.61	0.0	8.1	1.87	3.22	9.51	8.84	8.74
Merged-chr17-83687257-2	chr17	83686763	83687763	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18900.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	26.89	25.8	37.0	25.64	28.46	36.17	31.69	48.2	26.23
Merged-chr11-98889347-1	chr11	98888847	98889847	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197940, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-18542.0	NM_001025779	23834.0	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	14.87	10.6	18.5	3.37	6.06	20.09	9.51	11.5	10.62
Merged-chr13-93899832-1	chr13	93899332	93900332	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	MLT1A1|LTR|ERVL-MaLR	109055.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	10.87	4.15	3.7	8.77	8.4	1.61	5.28	4.42	6.87
Merged-chr17-33997555-1	chr17	33997055	33998055	+	776.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001347346, exon 4 of 8)	exon (NM_001347346, exon 4 of 8)	2778.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	19.45	11.52	21.27	7.42	4.67	9.65	15.84	16.36	12.49
Merged-chr14-68580960-1	chr14	68580460	68581460	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021475, intron 1 of 13)	intron (NM_021475, intron 1 of 13)	1112.0	NM_021475	58860.0	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	9.72	12.9	12.95	16.19	21.46	11.25	11.62	7.07	7.49
Merged-chr3-8738869-1	chr3	8738369	8739369	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71831.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.29	8.75	7.4	10.12	9.33	10.45	12.67	10.17	6.25
Merged-chr19-46960373-1	chr19	46959873	46960873	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164363, intron 1 of 17)	ID4_|SINE|ID	1978.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	40.62	25.34	30.52	29.69	25.19	17.68	22.18	14.15	16.86
Merged-chrX-103695958-1	chrX	103695458	103696458	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65372.0	NM_029158	75064.0	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	3.43	0.46	3.7	2.7	1.4	5.63	2.11	3.1	1.25
Merged-chr12-25150875-1	chr12	25150375	25151375	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21701.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	13.73	17.05	12.95	18.89	11.66	22.51	22.18	14.15	19.36
Merged-chr18-24466994-2	chr18	24466472	24467472	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3899.0	NM_026529	68046.0	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	1.72	1.38	1.85	1.35	0.93	2.41	3.17	1.77	2.5
Merged-chr2-11332067-1	chr2	11331567	11332567	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7422.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	21.74	17.05	22.2	30.36	48.98	19.29	40.14	29.63	5.0
Merged-chr13-112532899-1	chr13	112532399	112533399	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139299, intron 12 of 16)	intron (NM_139299, intron 12 of 16)	47763.0	NM_139299	218624.0	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	5.15	3.23	1.85	2.02	2.33	4.02	7.39	2.21	5.0
Merged-chr1-87907479-1	chr1	87906979	87907979	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177646, intron 3 of 29)	L1MD1|LINE|L1	-53180.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	5.72	3.69	3.7	4.72	8.4	2.41	5.28	1.33	2.5
Merged-chr10-70095180-2	chr10	70094697	70095697	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1924.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	36.04	41.01	21.27	39.13	36.85	61.09	69.71	64.56	34.35
Merged-chr8-70565616-1	chr8	70565116	70566116	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	25941.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	4.58	2.76	0.0	6.07	2.8	7.23	2.11	1.33	5.62
Merged-chr11-103409260-1	chr11	103408760	103409760	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 1 of 11)	intron (NM_183034, intron 1 of 11)	3404.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	10.87	15.21	22.2	17.54	19.59	19.29	28.52	22.99	23.73
Merged-chrX-96290909-1	chrX	96290409	96291409	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177789, intron 1 of 6)	intron (NM_177789, intron 1 of 6)	2529.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	44.05	87.09	24.97	61.4	43.39	49.83	84.49	74.28	30.6
Merged-chrX-94129161-1	chrX	94128661	94129661	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5394.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	12.01	14.75	9.25	6.75	10.26	16.08	11.62	9.73	13.12
Merged-chr9-44482306-2	chr9	44481799	44482799	+	776.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357490)	promoter-TSS (NM_001357490)	-526.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	20.59	17.51	11.1	23.62	13.06	20.09	33.8	22.55	26.85
Merged-chr3-41580072-3	chr3	41579576	41580576	+	775.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	15196.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	8.01	15.21	10.17	21.59	14.46	19.29	17.96	12.38	11.24
Merged-chr3-9128573-2	chr3	9128065	9129065	+	775.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66601.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	1.14	0.92	2.77	5.4	2.33	3.22	2.11	0.0	2.5
Merged-chr12-102448418-2	chr12	102447865	102448865	+	775.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-8552.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	22.88	41.01	14.8	24.29	23.33	20.9	20.07	18.13	16.86
Merged-chr8-94810187-3	chr8	94809681	94810681	+	775.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011332)	promoter-TSS (NM_011332)	-272.0	NM_011332	20295.0	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	5.15	12.9	17.57	13.49	4.2	8.04	13.73	13.27	17.49
Merged-chr5-124011618-2	chr5	124011133	124012133	+	775.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	14781.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	95.53	69.58	58.27	90.41	71.38	87.61	111.96	93.74	36.85
Merged-chr1-178338404-2	chr1	178337932	178338932	+	775.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-617.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	161.32	196.75	120.24	144.39	164.68	158.35	176.38	208.26	134.27
Merged-chr1-31050450-2	chr1	31049967	31050967	+	775.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136907, intron 1 of 3)	intron (NR_136907, intron 1 of 3)	45987.0	NR_136907	102634473.0	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	12.59	5.99	18.5	3.37	3.73	6.43	26.4	12.82	9.99
Merged-chr9-37147371-2	chr9	37146863	37147863	+	775.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_148950)	promoter-TSS (NM_148950)	-41.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.0	1.84	1.85	4.72	0.0	4.02	3.17	2.21	0.0
Merged-chr15-39735367-3	chr15	39734862	39735862	+	775.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10568.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	3.43	3.23	1.85	8.1	6.06	3.22	2.11	1.33	5.0
Merged-chr10-79882150-3	chr10	79881677	79882677	+	775.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011178, intron 4 of 4)	CpG	2510.0	NM_011178	19152.0	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	7.44	8.29	3.7	10.12	7.0	10.45	5.28	3.54	6.87
Merged-chr7-3715467-3	chr7	3714967	3715967	+	775.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357394, intron 9 of 14)	intron (NM_001357394, intron 9 of 14)	4915.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	13.73	18.89	37.0	22.94	15.39	32.15	17.96	14.59	19.36
Merged-chr12-100520482-2	chr12	100520010	100521010	+	775.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	CpG	312.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	36.04	33.64	32.37	58.03	35.92	30.54	42.25	25.2	7.49
Merged-chr10-125371641-3	chr10	125371140	125372140	+	775.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42677.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	47.48	65.43	25.9	52.63	59.71	52.25	39.08	42.45	31.23
Merged-chr16-33023991-3	chr16	33023473	33024473	+	775.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178378, intron 8 of 10)	LTR41B|LTR|ERVL	32213.0	NM_178378	69707.0	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	8.58	1.38	5.55	5.4	2.8	0.0	3.17	3.1	5.0
Merged-chr15-59568813-2	chr15	59568332	59569332	+	775.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-79822.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	8.58	7.37	1.85	14.84	3.73	12.86	8.45	13.27	7.49
Merged-chr19-4215402-1	chr19	4214902	4215902	+	775.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310039, intron 1 of 2)	CpG	1013.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	72.08	35.02	49.95	57.35	42.92	44.21	43.3	20.34	21.86
Merged-chr18-26932466-2	chr18	26931960	26932960	+	775.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-1178303.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.86	3.69	5.55	7.42	4.67	8.04	6.34	9.29	5.62
Merged-chr4-119124991-3	chr4	119124489	119125489	+	775.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011400, intron 2 of 9)	MIR3|SINE|MIR	16244.0	NM_011400	20525.0	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	93.24	90.31	83.25	61.4	57.85	36.17	172.16	148.57	103.05
Merged-chr6-123262088-2	chr6	123261585	123262585	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-22.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	29.17	38.71	8.32	47.23	56.91	57.87	28.52	22.11	29.98
Merged-chr7-98869251-3	chr7	98868735	98869735	+	775.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30390.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	3.43	2.76	0.0	4.72	1.87	3.22	4.22	5.31	1.25
Merged-chr11-106663834-1	chr11	106663334	106664334	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50904.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	78.94	73.26	63.82	62.07	39.65	97.26	44.36	46.43	44.97
Merged-chr8-36016542-1	chr8	36016042	36017042	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78286.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	3.43	3.69	0.0	6.75	6.53	1.61	0.0	0.44	2.5
Merged-chr4-33033108-1	chr4	33032608	33033608	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355494, intron 1 of 6)	B3|SINE|B2	1728.0	NM_001355494	56228.0	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	3.43	18.43	3.7	6.75	4.2	8.04	11.62	9.73	6.25
Merged-chr1-106241610-1	chr1	106241110	106242110	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	69741.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	20.02	6.91	11.1	15.52	4.2	17.68	6.34	3.54	3.75
Merged-chr19-21032744-1	chr19	21032244	21033244	+	775.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71966.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	34.9	34.56	31.45	40.48	26.12	45.01	33.8	38.47	44.97
Merged-chr16-31022467-3	chr16	31021967	31022967	+	775.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	58965.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	22.31	9.68	8.32	13.49	16.33	20.9	8.45	4.86	2.5
Merged-chr15-25047987-2	chr15	25047459	25048459	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	365805.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	1.14	6.91	0.0	2.7	2.33	0.0	2.11	4.42	0.0
Merged-chr1-160280798-2	chr1	160280294	160281294	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038621, intron 2 of 8)	intron (NM_001038621, intron 2 of 8)	15178.0	NR_035448	100316784.0		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	1.72	1.84	4.62	4.72	4.67	1.61	4.22	2.21	2.5
Merged-chr1-84286388-2	chr1	84285894	84286894	+	775.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1749.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	1.14	3.23	11.1	4.72	2.8	4.82	12.67	4.86	1.87
Merged-chr5-88698831-2	chr5	88698318	88699318	+	775.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22053.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	5.72	5.07	2.77	6.75	2.33	4.82	4.22	3.98	1.25
Merged-chr7-130669273-3	chr7	130668777	130669777	+	775.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_206856, intron 3 of 20)	intron (NM_206856, intron 3 of 20)	-23279.0	NM_001347637	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	22.88	27.65	34.22	10.12	21.46	26.53	28.52	25.2	19.98
Merged-chrUn_JH584304-42388-1	chrUn_JH584304	41888	42888	+	775.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17301.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	7.39	8.4	0.0
Merged-chr4-123432121-3	chr4	123431612	123432612	+	775.5722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001199136, exon 57 of 98)	exon (NM_001199136, exon 57 of 98)	-20201.0	NM_001167918	442834.0	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	30.32	37.32	48.1	23.62	21.46	22.51	49.64	33.6	38.72
Merged-chr5-66144451-3	chr5	66143942	66144942	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	6536.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	49.2	50.69	22.2	27.66	20.06	30.54	69.71	53.94	28.73
Merged-chr10-95973479-3	chr10	95972980	95973980	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 1 of 28)	intron (NM_001001932, intron 1 of 28)	32817.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	8.58	16.13	7.4	10.8	10.73	6.43	5.28	2.65	4.37
Merged-chr2-30266481-3	chr2	30265993	30266993	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281829)	promoter-TSS (NM_001281829)	-228.0	NM_001281829	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	64.07	71.88	35.15	99.86	82.11	74.75	69.71	72.07	25.61
Merged-chr3-88242717-3	chr3	88242242	88243242	+	775.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_021375)	TTS (NM_021375)	11942.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.0	1.38	14.8	6.75	1.87	4.02	2.11	0.88	1.87
Merged-chr12-85344392-2	chr12	85343905	85344905	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-5043.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	81.23	110.13	80.47	112.0	73.71	128.61	151.03	197.21	109.29
Merged-chr16-4905295-1	chr16	4904795	4905795	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	19195.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	26.89	22.12	51.8	35.09	31.72	38.58	23.24	21.67	18.11
Merged-chr16-36725270-2	chr16	36724787	36725787	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	31309.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	13.73	14.75	0.0	13.49	4.67	11.25	13.73	5.75	9.37
Merged-chr4-133204577-2	chr4	133204051	133205051	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7985.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	30.32	22.58	34.22	51.95	24.72	22.51	25.35	8.4	11.24
Merged-chr7-110117005-1	chr7	110116505	110117505	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_001355058	22390.0	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	8.01	8.75	4.62	10.12	4.2	11.25	13.73	3.54	3.12
Merged-chr5-121204916-2	chr5	121204415	121205415	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011290, intron 1 of 6)	CpG	414.0	NM_011290	19988.0	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	135.0	135.01	92.5	143.71	153.01	116.55	145.75	139.72	71.2
Merged-chr14-15064333-2	chr14	15063834	15064834	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243519.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	12.01	31.79	16.65	16.19	17.73	32.96	42.25	43.33	21.86
Merged-chr17-50185783-1	chr17	50185283	50186283	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 1 of 9)	intron (NM_181397, intron 1 of 9)	4714.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	5.15	4.61	1.85	8.77	6.06	7.23	4.22	9.73	6.25
Merged-chr15-93399360-1	chr15	93398860	93399860	+	775.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358749, exon 2 of 9)	5' UTR (NM_001358749, exon 2 of 9)	896.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	76.66	74.19	55.5	24.96	36.85	35.37	92.94	83.57	48.09
Merged-chr14-32169064-1	chr14	32168564	32169564	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019744, intron 1 of 9)	intron (NM_019744, intron 1 of 9)	3275.0	NM_019744	27057.0	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	70.93	81.56	54.57	128.2	91.9	127.8	151.03	154.32	74.32
Merged-chr2-144720645-2	chr2	144720147	144721147	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-103019.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	10.3	6.45	9.25	10.8	9.8	12.06	11.62	3.54	9.99
Merged-chr13-20428853-2	chr13	20428348	20429348	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 15 of 21)	intron (NM_080288, intron 15 of 21)	-44142.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	11.44	11.06	4.62	18.89	10.73	4.02	6.34	1.77	1.87
Merged-chr13-108057035-1	chr13	108056535	108057535	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127346, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	12561.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	6.86	0.92	2.77	1.35	1.87	4.02	2.11	3.1	1.25
Merged-chr17-23630419-2	chr17	23629922	23630922	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001320258, exon 10 of 10)	3' UTR (NM_001320258, exon 10 of 10)	14847.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	1.72	0.92	0.0	3.37	0.93	3.22	2.11	0.88	3.75
Merged-chr3-41530855-1	chr3	41530355	41531355	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2381.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	4.58	4.15	7.4	5.4	8.86	7.23	5.28	3.98	5.0
Merged-chr7-4938714-2	chr7	4938264	4939264	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173008, intron 12 of 13)	B3|SINE|B2	12920.0	NM_173008	269855.0	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	3.43	5.53	1.85	6.75	0.93	1.61	2.11	0.88	2.5
Merged-chr13-51138058-2	chr13	51137549	51138549	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011462, intron 1 of 3)	intron (NM_011462, intron 1 of 3)	3731.0	NM_011462	20729.0	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	6.29	4.15	0.0	6.07	4.2	8.04	3.17	3.1	7.49
Merged-chr1-172004533-2	chr1	172004032	172005032	+	775.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	22763.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	7.44	11.52	16.65	19.57	8.86	4.82	7.39	7.52	6.25
Merged-chr17-66121715-1	chr17	66121215	66122215	+	775.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1805.0	NM_001003919	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.58	5.99	6.47	6.75	9.33	22.51	8.45	3.1	7.49
Merged-chr18-61095701-3	chr18	61095206	61096206	+	775.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9866.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	17.16	22.12	27.75	24.96	17.73	27.33	24.29	19.46	21.23
Merged-chr4-55598176-3	chr4	55597664	55598664	+	775.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65689.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.44	11.98	5.55	8.77	8.86	4.82	19.01	10.61	16.86
Merged-chr3-40694662-2	chr3	40694143	40695143	+	775.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175515, intron 13 of 15)	LTR16A|LTR|ERVL	-14228.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	4.0	9.22	7.4	6.75	11.2	11.25	6.34	4.42	11.24
Merged-chr12-26454853-3	chr12	26454345	26455345	+	775.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 1 of 5)	intron (NM_021384, intron 1 of 5)	1607.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	10.3	26.73	21.27	30.36	12.13	26.53	24.29	26.53	9.99
Merged-chr2-45231044-3	chr2	45230595	45231595	+	775.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113653.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	187.63	174.18	91.57	209.16	134.35	142.27	212.29	174.21	113.04
Merged-chr7-4207322-3	chr7	4206824	4207824	+	775.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30430.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	13.73	14.28	24.05	16.19	8.86	17.68	13.73	19.01	12.49
Merged-chr4-132158445-3	chr4	132157933	132158933	+	775.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13947.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	25.74	13.82	12.95	12.14	14.46	16.08	10.56	9.29	23.73
Merged-chr3-135211883-2	chr3	135211364	135212364	+	775.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173762)	promoter-TSS (NM_173762)	-699.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	52.63	67.27	48.1	68.15	66.24	51.44	66.54	65.0	43.09
Merged-chr5-148473220-3	chr5	148472719	148473719	+	775.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-73315.0	NM_007513	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	5.15	7.37	18.5	9.45	7.93	3.22	19.01	3.98	16.24
Merged-chr1-179960422-2	chr1	179959907	179960907	+	775.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-353.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	2.29	2.76	5.55	4.72	1.4	3.22	2.11	0.44	1.25
Merged-chr2-148407556-3	chr2	148407056	148408056	+	775.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009378, exon 1 of 1)	exon (NM_009378, exon 1 of 1)	632.0	NM_009378	21824.0	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	30.89	29.03	14.8	38.46	27.99	69.93	29.57	21.22	25.61
Merged-chr15-25282092-3	chr15	25281595	25282595	+	775.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	131669.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	75.51	53.45	44.4	90.41	101.23	65.91	82.38	99.93	43.09
Merged-chr7-125878187-2	chr7	125877678	125878678	+	775.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001101488)	TTS (NM_001101488)	170308.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	8.58	4.61	3.7	4.72	5.13	8.84	7.39	1.77	3.12
Merged-chr16-29597325-2	chr16	29596845	29597845	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133752, intron 5 of 28)	intron (NM_133752, intron 5 of 28)	18011.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	14.3	17.05	30.52	33.06	27.52	22.51	15.84	15.92	7.49
Merged-chr8-40311283-2	chr8	40310790	40311790	+	775.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030110, intron 1 of 14)	ORR1E|LTR|ERVL-MaLR	3239.0	NM_030110	78506.0	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	6.29	9.22	6.47	6.07	5.6	14.47	17.96	19.01	21.23
Merged-chr4-82933818-2	chr4	82933315	82934315	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154662, intron 26 of 35)	intron (NR_154662, intron 26 of 35)	-48664.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	6.29	3.23	3.7	2.7	3.73	3.22	4.22	2.21	3.75
Merged-chrX-48054612-2	chrX	48054057	48055057	+	775.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19704.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	13.16	17.97	8.32	16.19	30.32	13.66	12.67	20.78	7.49
Merged-chr12-8902811-3	chr12	8902310	8903310	+	775.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-18497.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	52.63	57.14	62.9	35.76	34.52	61.09	92.94	66.33	55.58
Merged-chr4-63417493-3	chr4	63416992	63417992	+	775.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008791, intron 10 of 12)	intron (NM_001008791, intron 10 of 12)	-14047.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.58	2.3	0.0	6.07	1.4	5.63	4.22	0.88	1.87
Merged-chr16-52056482-4	chr16	52056070	52057070	+	775.291687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	MER58A|DNA|hAT-Charlie	25021.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	32.61	45.62	19.42	60.05	57.85	29.74	57.03	48.64	26.85
Merged-chr3-51701551-3	chr3	51701045	51702045	+	775.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	40366.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	12.01	1.84	1.85	4.72	1.87	6.43	4.22	2.21	0.0
Merged-chr3-51270163-3	chr3	51269666	51270666	+	775.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-6595.0	NR_073429	67746.0	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	66.93	65.43	38.85	68.82	35.45	51.44	68.65	82.69	23.73
Merged-chr3-21118342-1	chr3	21117842	21118842	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-751165.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	13.73	4.61	3.7	4.05	3.73	0.8	4.22	1.77	5.0
Merged-chrUn_JH584304-73149-1	chrUn_JH584304	72649	73649	+	775.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-13460.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	88.72	67.21	0.0
Merged-chr15-31447398-1	chr15	31446898	31447898	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145852, intron 3 of 4)	intron (NM_145852, intron 3 of 4)	6291.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	2.29	3.69	9.25	6.07	2.8	5.63	1.06	5.31	0.0
Merged-chr6-42324601-1	chr6	42324101	42325101	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	39.0	NM_001286584	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	1.14	1.84	5.55	6.07	1.87	1.61	5.28	0.88	3.75
Merged-chr5-122652643-2	chr5	122652151	122653151	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284402, intron 1 of 12)	intron (NM_001284402, intron 1 of 12)	2227.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	37.18	22.58	15.72	31.71	13.53	10.45	14.79	5.31	9.99
Merged-chr15-34444355-2	chr15	34443897	34444897	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1121.0	NM_001163485	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	44.05	53.45	38.85	39.81	34.99	45.01	40.14	73.84	41.22
Merged-chr2-19301456-2	chr2	19300938	19301938	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-42879.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	6.86	13.36	18.5	14.17	7.46	10.45	14.79	9.29	6.87
Merged-chr11-100737342-2	chr11	100736848	100737848	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	867.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	93.24	87.09	90.65	66.8	58.78	75.56	127.8	116.73	78.69
Merged-chr10-34416099-2	chr10	34415601	34416601	+	775.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 1 of 11)	RMER6A|LTR|ERVK	2450.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	25.74	24.88	13.87	25.64	19.13	27.33	22.18	33.6	22.48
Merged-chr16-36602840-2	chr16	36602351	36603351	+	775.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40717.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	9.72	4.61	7.4	4.72	2.8	6.43	14.79	8.4	5.62
Merged-chr13-98817424-3	chr13	98816922	98817922	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1973.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	40.62	30.41	20.35	40.48	14.93	23.31	40.14	38.91	23.73
Merged-chr19-60144576-3	chr19	60144129	60145129	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_026942)	promoter-TSS (NR_026942)	-46.0	NR_026942	107376.0	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	4.58	5.07	1.85	0.67	1.87	1.61	3.17	3.1	1.25
Merged-chr3-52844229-3	chr3	52843757	52844757	+	775.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83409.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	1.72	2.3	0.0	4.05	1.87	2.41	3.17	0.88	1.25
Merged-chr6-125162157-3	chr6	125161658	125162658	+	775.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001302779)	TTS (NM_001302779)	3615.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	12.01	6.45	14.8	12.82	7.46	8.04	14.79	10.17	10.62
Merged-chr2-60928056-3	chr2	60927547	60928547	+	775.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	35157.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	6.29	5.07	1.85	6.07	5.13	3.22	9.51	2.65	5.62
Merged-chr11-79877374-2	chr11	79876882	79877882	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	85005.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	20.02	23.5	49.95	75.57	64.38	71.54	58.09	49.08	37.47
Merged-chr11-116626573-2	chr11	116626057	116627057	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	462.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	60.64	42.85	60.12	96.48	46.18	71.54	110.9	100.37	28.73
Merged-chr5-96993327-2	chr5	96992819	96993819	+	775.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4370.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	6.86	3.23	3.7	22.27	12.6	18.49	11.62	16.8	9.37
Merged-chr8-41045283-2	chr8	41044777	41045777	+	775.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 5 of 13)	L1M3|LINE|L1	-3346.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	3.43	5.99	5.55	8.1	6.53	2.41	11.62	0.88	2.5
Merged-chr11-6484558-5	chr11	6484081	6485081	+	775.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_011221	19291.0	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	51.48	35.02	57.35	24.96	16.33	49.03	30.63	34.49	29.98
Merged-chr5-43870196-3	chr5	43869738	43870738	+	775.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	1429.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	170.47	225.32	183.14	154.51	148.35	164.78	236.59	242.31	119.91
Merged-chr14-51090221-3	chr14	51089699	51090699	+	775.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021472)	promoter-TSS (NM_021472)	-878.0	NM_001161731	11727.0	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	129.86	152.52	134.12	105.26	84.9	65.91	118.29	143.26	68.07
Merged-chr16-76695116-3	chr16	76694601	76695601	+	775.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83991.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	5.72	6.45	1.85	3.37	2.33	3.22	5.28	3.54	6.87
Merged-chr14-62027873-2	chr14	62027368	62028368	+	775.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	265111.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	30.89	41.01	35.15	56.68	45.72	62.7	43.3	24.32	22.48
Merged-chr15-28395867-3	chr15	28395373	28396373	+	775.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133365, intron 58 of 78)	intron (NM_133365, intron 58 of 78)	192107.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	14.3	10.14	12.02	14.84	10.26	14.47	12.67	8.4	14.99
Merged-chr13-102678705-3	chr13	102678200	102679200	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14847.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	10.87	4.15	0.0	9.45	6.06	6.43	4.22	7.07	1.25
Merged-chr13-116957821-3	chr13	116957329	116958329	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	67687.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	26.31	22.58	16.65	12.82	14.46	17.68	31.69	27.86	6.87
Merged-chr11-5273058-3	chr11	5272555	5273555	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-11445.0	NM_032396	84035.0	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	1.14	3.23	0.0	5.4	3.27	4.82	1.06	7.96	1.25
Merged-chrX-96293430-3	chrX	96292886	96293886	+	775.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177789)	promoter-TSS (NM_177789)	52.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	46.34	59.44	31.45	68.15	45.72	33.76	68.65	95.07	24.36
Merged-chr1-179959934-2	chr1	179959448	179960448	+	775.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346805)	promoter-TSS (NM_001346805)	-812.0	NM_001359541	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	9.15	3.69	4.62	9.45	2.33	3.22	3.17	0.44	4.37
Merged-chr5-118575111-3	chr5	118574606	118575606	+	775.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347445, intron 1 of 30)	intron (NM_001347445, intron 1 of 30)	14387.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	13.16	3.23	4.62	1.35	1.4	4.02	6.34	3.98	7.49
Merged-chr15-103169135-3	chr15	103168597	103169597	+	775.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5813.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	6.86	1.38	5.55	2.02	0.93	3.22	4.22	2.65	2.5
Merged-chr17-17392015-2	chr17	17391520	17392520	+	775.025024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 9 of 9)	intron (NM_025934, intron 9 of 9)	-10666.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	65.79	74.65	59.2	47.23	41.52	45.82	64.43	77.82	44.34
Merged-chr8-13632563-1	chr8	13632063	13633063	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	45024.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	8.01	3.23	5.55	2.7	2.33	16.88	5.28	1.33	3.75
Merged-chr1-88259351-2	chr1	88258836	88259836	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	10072.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	5.72	5.07	16.65	15.52	8.4	28.13	9.51	4.86	25.61
Merged-chr2-32318180-1	chr2	32317680	32318680	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029811)	promoter-TSS (NR_029811)	-85.0	NR_128563	104795665.0		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	2.86	2.76	5.55	6.07	2.33	0.0	4.22	1.33	0.0
Merged-chr4-134920853-1	chr4	134920353	134921353	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-2772.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	122.42	150.22	130.42	110.65	87.24	119.76	77.1	143.26	59.95
Merged-chr9-116126713-1	chr9	116126213	116127213	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 3 of 6)	intron (NM_029575, intron 3 of 6)	48650.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	16.02	9.68	22.2	14.84	15.86	12.86	1.06	3.54	7.49
Merged-chr9-63714899-2	chr9	63714394	63715394	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	L1MB7|LINE|L1	43100.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	22.88	5.99	1.85	23.62	14.0	8.04	8.45	9.29	1.87
Merged-chr10-59296446-3	chr10	59295935	59296935	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26861.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	7.44	2.76	0.92	2.02	4.67	7.23	4.22	1.77	3.12
Merged-chr3-27743456-1	chr3	27742956	27743956	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33004.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	5.15	3.69	0.92	9.45	8.86	8.84	9.51	2.65	1.87
Merged-chr3-127949077-3	chr3	127948596	127949596	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040552, intron 4 of 4)	intron (NR_040552, intron 4 of 4)	32925.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	5.15	2.3	3.7	0.67	2.33	8.84	3.17	1.77	1.25
Merged-chr8-84857387-2	chr8	84856908	84857908	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152751, intron 1 of 12)	intron (NR_152751, intron 1 of 12)	422.0	NM_025648	66590.0	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	128.14	104.6	143.37	101.88	100.3	116.55	97.17	98.16	76.82
Merged-chr2-33430210-1	chr2	33429710	33430710	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085507, intron 1 of 2)	intron (NM_001085507, intron 1 of 2)	1114.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	45.76	54.37	49.02	37.78	51.32	71.54	60.2	55.71	41.84
Merged-chr10-96408014-1	chr10	96407514	96408514	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181807.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	12.59	8.75	8.32	9.45	7.46	12.86	9.51	18.13	6.25
Merged-chr12-108293105-1	chr12	108292605	108293605	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13165.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	5.72	0.46	0.0	2.02	0.93	0.0	2.11	0.44	0.0
Merged-chr3-123236124-1	chr3	123235624	123236624	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_080451)	promoter-TSS (NM_080451)	25.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	2.86	2.3	0.0	5.4	0.47	0.0	0.0	1.33	5.62
Merged-chr12-109509250-2	chr12	109508787	109509787	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31709.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	8.01	7.37	7.4	8.77	9.8	19.29	32.74	19.9	6.25
Merged-chr7-30219394-2	chr7	30218902	30219902	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11989.0	NM_001360648	66411.0	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	6.86	1.84	8.32	9.45	13.53	11.25	47.53	35.37	34.97
Merged-chr4-33189096-1	chr4	33188596	33189596	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001034867, exon 1 of 7)	exon (NM_001034867, exon 1 of 7)	641.0	NM_001034867	242377.0	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	4.0	1.84	5.55	2.7	1.4	1.61	5.28	0.0	2.5
Merged-chr7-25782228-1	chr7	25781728	25782728	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	6505.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	17.73	12.9	19.42	29.69	16.79	35.37	20.07	26.53	23.73
Merged-chr8-91108359-1	chr8	91107859	91108859	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011250, intron 17 of 21)	L1M4b|LINE|L1	25380.0	NM_001358938	14339.0	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	7.44	10.6	2.77	19.57	12.13	25.72	9.51	7.52	13.12
Merged-chr9-87171275-2	chr9	87170759	87171759	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001101482, intron 2 of 3)	intron (NM_001101482, intron 2 of 3)	22031.0	NM_001359955	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	40.62	39.63	15.72	78.27	64.84	56.27	25.35	38.47	24.98
Merged-chr1-123544566-2	chr1	123544067	123545067	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 5 of 25)	intron (NM_199021, intron 5 of 25)	500992.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.0	4.15	3.7	5.4	3.73	1.61	1.06	4.86	1.25
Merged-chr10-88740067-1	chr10	88739567	88740567	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025859, intron 4 of 5)	ORR1D2|LTR|ERVL-MaLR	8653.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	4.58	6.45	8.32	2.7	5.6	12.86	8.45	3.54	7.49
Merged-chr13-28502310-3	chr13	28501802	28502802	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	208571.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	3.43	3.69	1.85	9.45	1.87	2.41	3.17	4.86	1.25
Merged-chr3-145925679-1	chr3	145925179	145926179	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	intron (NM_009740, intron 1 of 2)	1417.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	33.75	41.01	14.8	22.27	34.99	16.88	45.42	42.89	16.24
Merged-chr11-117150650-2	chr11	117150145	117151145	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166506, exon 12 of 16)	exon (NM_001166506, exon 12 of 16)	35473.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	9.72	1.84	5.55	7.42	10.73	7.23	8.45	5.75	5.62
Merged-chr11-105978771-1	chr11	105978271	105979271	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281819, intron 15 of 23)	intron (NM_001281819, intron 15 of 23)	3563.0	NM_009598	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	4.0	4.15	0.92	3.37	3.73	0.8	3.17	1.77	2.5
Merged-chr1-97386367-1	chr1	97385867	97386867	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258064.0	NM_028942	74441.0	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	2.29	4.15	1.85	12.14	6.06	9.65	1.06	5.31	1.25
Merged-chr18-67201993-1	chr18	67201493	67202493	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-3366.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	37.18	40.55	20.35	31.71	34.52	31.35	23.24	22.55	9.37
Merged-chr2-25257769-1	chr2	25257269	25258269	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2330.0	NM_177344	227615.0	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	32.61	24.88	25.9	11.47	7.93	8.84	20.07	14.59	5.62
Merged-chr4-91376502-1	chr4	91376002	91377002	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-6.0	NM_001347149	15569.0	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	3.43	1.38	9.25	0.0	1.4	1.61	0.0	1.33	1.25
Merged-chr10-37504745-1	chr10	37504245	37505245	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-365819.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.43	5.53	1.85	2.7	8.86	6.43	1.06	2.21	3.75
Merged-chr11-95870107-2	chr11	95869575	95870575	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008081, intron 7 of 10)	B4A|SINE|B4	11258.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	18.88	12.44	12.95	14.17	10.73	11.25	31.69	23.43	4.37
Merged-chr11-99177330-1	chr11	99176830	99177830	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22253.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	30.89	16.13	14.8	15.52	6.53	4.82	22.18	6.19	6.25
Merged-chr6-97531231-1	chr6	97530731	97531731	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	-43411.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.29	1.84	1.85	0.67	3.27	0.0	4.22	3.1	6.87
Merged-chr6-97453392-1	chr6	97452892	97453892	+	775.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	5894.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	90.38	70.5	57.35	103.91	79.31	81.99	100.34	103.47	80.56
Merged-chr8-123045181-1	chr8	123044681	123045681	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_045268)	TTS (NR_045268)	2606.0	NR_045268	100503178.0	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	9.15	5.07	6.47	10.12	6.53	8.84	5.28	1.77	6.25
Merged-chr18-46174094-2	chr18	46173599	46174599	+	775.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178872, intron 7 of 9)	intron (NM_178872, intron 7 of 9)	24719.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.0	3.69	3.7	10.8	3.73	4.82	7.39	3.98	9.99
Merged-chr1-59475799-3	chr1	59475283	59476283	+	774.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6364.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	41.19	27.65	18.5	20.92	17.73	9.65	61.26	57.92	20.61
Merged-chr2-6717159-3	chr2	6716673	6717673	+	774.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4489.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	40.62	68.66	30.52	35.76	26.59	47.42	52.81	48.2	24.98
Merged-chr6-17508733-2	chr6	17508243	17509243	+	774.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 3 of 21)	intron (NM_008591, intron 3 of 21)	44786.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.86	3.69	7.4	4.72	1.4	4.82	3.17	2.65	1.25
Merged-chr13-80862451-2	chr13	80861970	80862970	+	774.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-20914.0	NR_153410	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	4.58	3.69	3.7	2.7	5.6	0.0	2.11	2.65	1.87
Merged-chr16-85138750-2	chr16	85138253	85139253	+	774.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	34954.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	25.17	41.93	49.95	30.36	33.59	33.76	26.4	26.09	19.98
Merged-chr16-92397971-2	chr16	92397489	92398489	+	774.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	2089.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	33.18	35.02	40.7	93.79	60.65	82.79	36.97	32.28	44.97
Merged-chr9-55153093-3	chr9	55152607	55153607	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346658, intron 1 of 12)	intron (NM_001346658, intron 1 of 12)	3024.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	34.32	35.02	28.67	37.11	25.19	23.31	14.79	19.9	21.86
Merged-chr2-167659369-3	chr2	167658921	167659921	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	2123.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	50.91	41.01	59.2	57.35	36.85	43.4	36.97	46.87	26.23
Merged-chr9-120140844-3	chr9	120140349	120141349	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8893.0	NR_153960	17433.0	Mm.432562	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.57	3.69	1.85	3.37	1.87	3.22	0.0	2.21	1.87
Merged-chr2-18698796-3	chr2	18698311	18699311	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001334)	promoter-TSS (NM_001001334)	-211.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	7.44	2.3	5.55	2.7	5.13	1.61	2.11	2.21	0.0
Merged-chr7-139249531-3	chr7	139249055	139250055	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098636, intron 1 of 2)	intron (NM_001098636, intron 1 of 2)	1073.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	46.91	44.7	25.9	51.95	63.91	51.44	71.82	46.87	28.1
Merged-chr17-25867897-3	chr17	25867400	25868400	+	774.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026633, intron 2 of 4)	intron (NM_026633, intron 2 of 4)	838.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	62.93	56.22	55.5	77.59	51.32	61.09	77.1	70.3	23.73
Merged-chr7-143907471-4	chr7	143906929	143907929	+	774.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-25686.0	NR_105830	102465217.0		NR_105830	ENSMUSG00000099321	Mir6404	Gm28014|mmu-mir-6404	microRNA 6404	ncRNA	35.47	52.53	26.82	5.4	8.86	6.43	54.92	75.17	34.35
Merged-chr17-83654721-2	chr17	83654205	83655205	+	774.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22810.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	14.87	13.36	20.35	14.17	6.06	14.47	8.45	12.82	15.61
Merged-chr15-59795888-2	chr15	59795391	59796391	+	774.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045076)	promoter-TSS (NR_045076)	-932.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	11.44	3.69	3.7	6.75	8.4	8.04	6.34	3.1	9.99
Merged-chr6-135116683-2	chr6	135116175	135117175	+	774.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001205396, exon 2 of 4)	exon (NM_001205396, exon 2 of 4)	1608.0	NM_053118	93746.0	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	5.72	0.0	0.92	4.72	0.93	0.0	3.17	2.21	1.25
Merged-chr14-60988360-2	chr14	60987871	60988871	+	774.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013869, intron 5 of 9)	intron (NM_013869, intron 5 of 9)	49616.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	7.44	4.15	1.85	4.72	5.6	7.23	41.19	39.35	23.73
Merged-chr12-108206901-2	chr12	108206395	108207395	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159910, intron 5 of 5)	intron (NM_001159910, intron 5 of 5)	27157.0	NM_009832	12454.0	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	2.86	2.3	1.85	5.4	2.33	6.43	4.22	0.44	6.25
Merged-chr14-52316114-3	chr14	52315568	52316568	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001244916, exon 1 of 2)	exon (NM_001244916, exon 1 of 2)	255.0	NM_001244916	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	6.29	6.45	5.55	13.49	6.06	8.04	12.67	8.4	5.0
Merged-chr15-62210825-3	chr15	62210331	62211331	+	774.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	8620.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.29	11.52	3.7	4.05	6.53	15.27	7.39	3.1	16.24
Merged-chrX-101734162-3	chrX	101733664	101734664	+	774.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009910)	promoter-TSS (NM_009910)	-17.0	NM_009910	12766.0	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	17.16	18.43	15.72	24.29	30.32	12.86	22.18	15.03	17.49
Merged-chr7-98489942-3	chr7	98489438	98490438	+	774.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4284.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	2.29	1.84	7.4	5.4	3.73	2.41	3.17	0.0	4.37
Merged-chr11-86822979-3	chr11	86822506	86823506	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-15346.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	12.59	8.29	1.85	84.34	56.45	45.82	51.75	50.85	33.72
Merged-chr10-96738168-3	chr10	96737669	96738669	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	121168.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	16.02	5.99	10.17	8.77	7.93	9.65	11.62	7.07	6.87
Merged-chr18-50056298-3	chr18	50055788	50056788	+	774.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-2626.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	12.59	11.52	11.1	19.57	21.46	14.47	34.85	32.28	23.11
Merged-chr2-31689254-3	chr2	31688750	31689750	+	774.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153862)	promoter-TSS (NR_153862)	713.0	NM_001283046	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	192.78	242.37	185.92	187.57	214.59	159.15	203.84	246.73	126.78
Merged-chr12-105722864-2	chr12	105722412	105723412	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030187, intron 4 of 17)	intron (NM_030187, intron 4 of 17)	16930.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	2.29	3.23	0.92	4.72	4.2	0.0	1.06	1.77	6.25
Merged-chr1-191963502-2	chr1	191962987	191963987	+	774.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13883.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	18.88	11.98	8.32	6.75	4.2	8.04	3.17	5.31	0.0
Merged-chr3-84040691-2	chr3	84040204	84041204	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172681)	promoter-TSS (NM_172681)	-543.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	20.02	19.35	21.27	18.89	20.99	12.06	14.79	8.4	8.74
Merged-chr3-122888720-2	chr3	122888199	122889199	+	774.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046036, intron 5 of 5)	intron (NR_046036, intron 5 of 5)	-6373.0	NM_007980	14079.0	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	2.29	0.46	3.7	4.05	3.27	0.0	5.28	4.86	1.25
Merged-chr4-139196713-3	chr4	139196188	139197188	+	774.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	2577.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	69.22	110.59	69.37	103.91	58.78	90.02	126.74	91.53	74.94
Merged-chr10-88799498-3	chr10	88799000	88800000	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175158, intron 19 of 61)	MTD|LTR|ERVL-MaLR	27314.0	NM_175158	70683.0	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	16.59	10.6	19.42	20.24	19.13	36.17	10.56	10.17	12.49
Merged-chr10-75317068-3	chr10	75316608	75317608	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331095)	promoter-TSS (NM_001331095)	231.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	8.01	1.84	13.87	6.07	5.13	8.04	4.22	7.52	3.12
Merged-chr1-156009165-1	chr1	156008665	156009665	+	774.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 6 of 6)	intron (NM_144791, intron 6 of 6)	25652.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	9.15	7.83	16.65	4.05	5.13	11.25	47.53	54.39	14.36
Merged-chr8-88207462-1	chr8	88206962	88207962	+	774.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	L1MD2|LINE|L1	8249.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	24.6	20.74	23.12	39.81	31.72	32.15	29.57	30.95	13.12
Merged-chr5-62889519-1	chr5	62889019	62890019	+	774.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75696.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	1.72	6.45	2.77	4.72	2.8	4.82	3.17	1.77	1.25
Merged-chr18-49458435-3	chr18	49457941	49458941	+	774.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64848.0	NR_033785	67321.0	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	1.72	2.3	2.77	4.05	7.46	1.61	4.22	3.54	1.25
Merged-chr13-95883060-2	chr13	95882580	95883580	+	774.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	8842.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.15	6.91	3.7	39.13	42.45	35.37	25.35	17.69	23.11
Merged-chr10-68721185-3	chr10	68720697	68721697	+	774.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2549.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	9.15	8.29	13.87	7.42	5.13	8.04	9.51	13.71	14.36
Merged-chr17-51398176-3	chr17	51397674	51398674	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	50095.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	4.58	7.83	5.55	7.42	4.67	4.82	6.34	7.07	4.37
Merged-chr4-125123440-3	chr4	125122953	125123953	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	4428.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	81.8	58.06	47.17	71.52	42.45	56.27	70.76	50.41	31.85
Merged-chr16-15890736-3	chr16	15890206	15891206	+	774.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 18 of 18)	intron (NM_001355731, intron 18 of 18)	3420.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	62.93	64.05	86.95	49.93	51.78	67.52	51.75	57.92	50.59
Merged-chr2-163766435-3	chr2	163765935	163766935	+	774.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16196.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	28.6	21.66	7.4	34.41	18.19	27.33	7.39	2.21	2.5
Merged-chr12-54791245-2	chr12	54790743	54791743	+	774.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	RMER17D|LTR|ERVK	4419.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	37.18	42.85	40.7	37.78	29.86	45.01	60.2	35.37	42.47
Merged-chr7-16581856-3	chr7	16581357	16582357	+	774.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-31967.0	NR_136928	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	42.33	33.64	42.55	26.99	28.92	32.15	35.91	20.34	18.74
Merged-chr13-95891151-3	chr13	95890593	95891593	+	774.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	829.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	145.87	120.73	74.92	197.02	201.53	124.59	246.09	282.54	154.88
Merged-chr10-96001125-3	chr10	96000624	96001624	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001932, intron 9 of 28)	intron (NM_001001932, intron 9 of 28)	60461.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.15	2.76	0.0	4.05	5.13	6.43	3.17	6.63	6.25
Merged-chr17-33566396-3	chr17	33565916	33566916	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	10709.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	18.88	20.74	23.12	11.47	17.73	32.96	22.18	20.78	16.86
Merged-chr15-76232603-3	chr15	76232109	76233109	+	774.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163575)	TTS (NM_001163575)	-1231.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	16.02	4.15	7.4	9.45	4.67	4.02	7.39	4.86	3.75
Merged-chr11-79577941-3	chr11	79577444	79578444	+	774.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010897, intron 57 of 57)	intron (NM_010897, intron 57 of 57)	-13268.0	NM_175543	268451.0	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	6.29	3.23	1.85	4.72	1.87	0.8	6.34	2.21	5.0
Merged-chr1-34482188-4	chr1	34481672	34482672	+	774.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16240.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	82.38	72.8	49.02	69.5	51.78	73.14	78.16	63.23	55.58
Merged-chr1-137900440-1	chr1	137899940	137900940	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66015.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	10.3	20.27	12.02	18.89	27.06	12.86	16.9	19.01	9.99
Merged-chr7-90362930-1	chr7	90362430	90363430	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040085, intron 4 of 18)	intron (NM_001040085, intron 4 of 18)	-24051.0	NM_001040087	83671.0	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	6.29	4.61	0.0	5.4	3.27	3.22	0.0	0.88	3.12
Merged-chr16-43574195-2	chr16	43573702	43574702	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 7 of 10)	intron (NM_001285805, intron 7 of 10)	-66453.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	6.86	7.83	6.47	6.07	7.93	7.23	9.51	3.98	3.12
Merged-chr4-105242668-1	chr4	105242168	105243168	+	774.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	85321.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.86	6.91	0.0	0.67	1.4	3.22	13.73	7.96	8.74
Merged-chr9-65361716-1	chr9	65361216	65362216	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	656.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	149.88	129.94	91.57	139.67	97.5	129.41	90.83	91.97	56.83
Merged-chr1-14740210-2	chr1	14739714	14740714	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15752.0	NM_001360810	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	4.0	0.0	7.4	1.35	0.93	8.04	1.06	1.33	1.25
Merged-chr7-107370621-1	chr7	107370121	107371121	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021889)	promoter-TSS (NM_021889)	-169.0	NM_021889	60510.0	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	1.14	0.92	1.85	2.02	1.87	0.0	0.0	0.0	2.5
Merged-chr1-34490332-3	chr1	34489817	34490817	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR48A|LTR|ERV1	-8095.0	NM_009355	21755.0	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	14.3	6.45	14.8	12.14	7.0	9.65	13.73	9.29	7.49
Merged-chr19-57013550-1	chr19	57013050	57014050	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4975.0	NM_001177797	226250.0	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	7.44	0.92	0.0	4.05	4.2	4.02	3.17	1.77	2.5
Merged-chr7-139366734-1	chr7	139366234	139367234	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22375.0	NM_183144	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	6.29	5.53	3.7	10.12	4.67	8.84	6.34	1.33	7.49
Merged-chr5-20847154-1	chr5	20846654	20847654	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	34970.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	7.44	2.3	1.85	6.07	7.0	4.02	4.22	3.1	3.75
Merged-chr19-3376233-2	chr19	3375732	3376732	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 13 of 18)	Lx8|LINE|L1	-12625.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	45.19	67.74	61.05	48.58	70.91	85.2	96.11	91.53	64.95
Merged-chr9-44316613-3	chr9	44316120	44317120	+	774.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027909, exon 5 of 14)	exon (NM_027909, exon 5 of 14)	3662.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	26.89	15.67	19.42	36.43	24.72	36.17	21.12	9.29	15.61
Merged-chr9-90163511-1	chr9	90163011	90164011	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003911, intron 1 of 23)	CpG	533.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	3.43	0.92	3.7	6.07	1.87	3.22	1.06	0.44	3.75
Merged-chr19-14450033-1	chr19	14449533	14450533	+	774.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302951, intron 19 of 19)	intron (NM_001302951, intron 19 of 19)	-11527.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	5.15	4.61	4.62	4.72	6.06	1.61	4.22	1.77	1.87
Merged-chr2-33871534-1	chr2	33871034	33872034	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	intron (NM_175184, intron 2 of 9)	16412.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	1.14	0.46	1.85	35.09	36.39	22.51	14.79	20.78	28.73
Merged-chr14-121903988-1	chr14	121903488	121904488	+	774.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 1 of 8)	intron (NM_026861, intron 1 of 8)	11786.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	25.74	26.26	29.6	22.94	14.93	25.72	25.35	16.36	21.86
Merged-chr7-98534651-3	chr7	98534203	98535203	+	774.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40481.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	10.3	2.76	5.55	10.12	5.13	0.0	7.39	7.96	6.25
Merged-chr8-90857090-3	chr8	90856612	90857612	+	774.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	28277.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	13.16	8.29	26.82	20.24	15.39	28.94	12.67	11.94	11.87
Merged-chr11-52003200-3	chr11	52002699	52003699	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1022.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	201.93	253.43	122.09	204.44	212.73	157.54	265.1	323.67	166.75
Merged-chr1-151002151-3	chr1	151001660	151002660	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-8725.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	26.89	19.35	11.1	16.19	22.86	8.04	25.35	30.07	14.36
Merged-chr9-90206699-3	chr9	90206198	90207198	+	774.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 12 of 12)	intron (NM_194334, intron 12 of 12)	43720.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	10.87	7.37	7.4	5.4	4.2	5.63	6.34	3.1	3.75
Merged-chr11-117882011-3	chr11	117881539	117882539	+	774.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8513.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	116.7	79.25	64.75	148.44	103.1	102.08	77.1	86.22	63.08
Merged-chr19-46707507-3	chr19	46707008	46708008	+	774.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020577)	promoter-TSS (NM_020577)	65.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	49.77	42.85	37.0	60.72	55.51	56.27	38.02	43.33	24.98
Merged-chr1-93011051-4	chr1	93010556	93011556	+	774.383301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159658, intron 2 of 2)	intron (NM_001159658, intron 2 of 2)	4722.0	NM_177587	208760.0	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	5.72	0.46	0.0	7.42	1.4	1.61	7.39	3.98	1.25
Merged-chr11-79625067-3	chr11	79624588	79625588	+	774.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	-1925.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	8.58	9.22	5.55	8.77	5.6	7.23	3.17	2.21	2.5
Merged-chr15-33263865-2	chr15	33263380	33264380	+	774.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 3 of 7)	intron (NM_176073, intron 3 of 7)	142059.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	26.89	25.34	35.15	10.8	19.13	34.56	14.79	20.34	30.6
Merged-chr8-27085607-1	chr8	27085107	27086107	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054044)	promoter-TSS (NM_054044)	-234.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	2.86	0.92	1.85	5.4	0.47	1.61	7.39	0.44	2.5
Merged-chr1-51499023-1	chr1	51498523	51499523	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20624.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	22.31	24.42	20.35	29.69	21.46	36.17	26.4	23.88	28.1
Merged-chr4-129861549-1	chr4	129861049	129862049	+	774.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40841.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	2.29	2.3	11.1	4.72	1.87	0.0	41.19	35.37	9.37
Merged-chr1-34802434-1	chr1	34801934	34802934	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183019, intron 1 of 9)	intron (NM_183019, intron 1 of 9)	712.0	NM_183019	226970.0	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	8.58	5.07	5.55	12.82	12.6	12.06	7.39	9.29	4.37
Merged-chr6-129546077-1	chr6	129545577	129546577	+	774.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12793.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	9.15	10.14	2.77	14.84	3.73	12.86	1.06	2.21	4.37
Merged-chr19-56295229-1	chr19	56294729	56295729	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146101, intron 1 of 11)	intron (NM_146101, intron 1 of 11)	7317.0	NM_146101	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.0	0.0	0.0	1.35	2.8	1.61	2.11	0.44	0.0
Merged-chr10-88492873-3	chr10	88492367	88493367	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144807, intron 1 of 7)	intron (NM_144807, intron 1 of 7)	11103.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	4.0	3.23	0.0	7.42	4.2	4.82	6.34	3.54	2.5
Merged-chr19-12518015-3	chr19	12517501	12518501	+	774.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16005.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	12.59	20.74	15.72	12.14	12.6	12.86	20.07	18.13	20.61
Merged-chr12-98280721-3	chr12	98280196	98281196	+	774.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12061.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	9.72	11.52	9.25	5.4	6.06	8.84	10.56	3.54	7.49
Merged-chr7-141345019-3	chr7	141344519	141345519	+	774.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133191, intron 4 of 20)	B1_Mur1|SINE|Alu	6017.0	NM_133191	98845.0	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	10.87	15.21	11.1	9.45	12.6	3.22	20.07	13.27	6.87
Merged-chr4-101214280-3	chr4	101213756	101214756	+	774.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	51026.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	40.04	50.23	42.55	60.72	36.39	52.25	44.36	64.56	40.59
Merged-chr1-136344463-2	chr1	136343988	136344988	+	774.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347109, intron 1 of 17)	intron (NM_001347109, intron 1 of 17)	1616.0	NM_001347109	67886.0	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	8.01	15.21	18.5	19.57	12.6	31.35	20.07	16.36	13.12
Merged-chr15-4043279-2	chr15	4042769	4043769	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024188, intron 3 of 16)	GA-rich|Low_complexity|Low_complexity	-15863.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	16.02	10.14	14.8	14.84	6.06	10.45	15.84	10.17	8.12
Merged-chr12-86163118-2	chr12	86162611	86163611	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199843)	TTS (NM_001199843)	-6230.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	12.01	11.98	20.35	18.22	14.0	27.33	17.96	12.82	14.36
Merged-chr9-55544243-2	chr9	55543757	55544757	+	774.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027397, exon 4 of 6)	exon (NM_027397, exon 4 of 6)	3108.0	NM_027397	104360.0	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	2.86	0.92	1.85	6.75	0.0	4.82	2.11	1.77	1.25
Merged-chr6-100850793-2	chr6	100850289	100851289	+	774.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182939, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	17151.0	NM_182939	232314.0	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	10.3	20.74	18.5	12.14	3.27	7.23	24.29	21.67	13.74
Merged-chr4-102506793-3	chr4	102506294	102507294	+	774.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-63266.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	12.01	20.27	11.1	12.14	14.0	8.04	20.07	10.61	7.49
Merged-chr6-99252965-3	chr6	99252460	99253460	+	774.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	13555.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.29	1.38	1.85	4.05	4.2	4.02	9.51	7.96	4.37
Merged-chr6-54917769-3	chr6	54917279	54918279	+	774.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	53882.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.15	3.23	7.4	4.72	4.67	1.61	2.11	2.21	2.5
Merged-chr2-35462367-3	chr2	35461941	35462941	+	774.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145821)	promoter-TSS (NM_001145821)	-992.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	52.63	44.7	61.97	64.77	62.98	71.54	48.58	35.37	31.23
Merged-chr14-40936599-3	chr14	40936094	40937094	+	774.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	11615.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	93.82	105.52	74.0	103.91	96.57	117.35	48.58	59.69	49.96
Merged-chr17-24708841-2	chr17	24708361	24709361	+	774.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1208.0	NM_145396	213773.0	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	17.16	21.2	30.52	12.14	5.13	12.86	38.02	68.98	33.1
Merged-chr13-104152531-2	chr13	104152038	104153038	+	774.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25928.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	26.31	31.33	34.22	40.48	19.13	19.29	15.84	15.03	9.99
Merged-chr14-73390389-2	chr14	73389890	73390890	+	774.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-5101.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	42.33	37.32	21.27	32.39	20.53	26.53	22.18	16.8	14.99
Merged-chr11-64837975-3	chr11	64837478	64838478	+	774.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-141057.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	9.15	10.14	9.25	6.07	8.4	8.04	20.07	22.11	12.49
Merged-chr7-139296760-3	chr7	139296272	139297272	+	774.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48290.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	25.17	35.94	25.9	33.74	29.39	45.82	26.4	22.55	28.1
Merged-chr2-173586786-3	chr2	173586275	173587275	+	774.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027957, intron 13 of 14)	CpG	-8434.0	NM_027303	70065.0	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	6.86	2.3	3.7	3.37	3.27	0.0	0.0	1.77	6.25
Merged-chr9-107579580-2	chr9	107579081	107580081	+	774.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008317, exon 4 of 4)	3' UTR (NM_008317, exon 4 of 4)	-1088.0	NM_019750	56441.0	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	12.01	8.29	5.55	11.47	9.33	20.9	23.24	19.01	14.36
Merged-chr5-41842883-3	chr5	41842378	41843378	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081422, intron 1 of 26)	intron (NM_001081422, intron 1 of 26)	1437.0	NM_001310601	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	16.59	13.82	12.95	12.14	5.13	9.65	17.96	19.01	6.25
Merged-chr16-25038701-3	chr16	25038215	25039215	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20924.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	8.01	7.83	10.17	16.19	13.53	8.04	11.62	7.96	12.49
Merged-chr5-147418563-3	chr5	147418071	147419071	+	774.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033625)	promoter-TSS (NR_033625)	-49.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	18.88	20.74	16.65	35.76	25.19	25.72	24.29	8.84	6.87
Merged-chr16-94007341-2	chr16	94006842	94007842	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	1495.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.29	4.15	6.47	4.72	3.73	6.43	2.11	4.86	5.0
Merged-chr10-94917403-3	chr10	94916964	94917964	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 2 of 30)	intron (NM_018797, intron 2 of 30)	27114.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	13.16	7.83	9.25	29.01	15.39	21.7	6.34	10.61	2.5
Merged-chr9-14893608-1	chr9	14893108	14894108	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176807, intron 4 of 4)	MTEb|LTR|ERVL-MaLR	10343.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	6.29	2.76	1.85	4.72	2.33	8.84	3.17	3.54	1.25
Merged-chr12-84217108-1	chr12	84216608	84217608	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	1773.0	NM_001163501	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	26.31	27.65	27.75	31.71	20.06	16.08	25.35	19.01	14.99
Merged-chr8-119839278-1	chr8	119838778	119839778	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	1301.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	263.14	260.34	151.69	265.84	207.13	176.03	240.81	254.25	156.13
Merged-chr1-37308217-3	chr1	37307739	37308739	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	intron (NM_030266, intron 1 of 25)	8401.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	73.22	75.57	110.07	24.29	20.99	40.99	34.85	36.7	27.48
Merged-chr13-109348288-1	chr13	109347788	109348788	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	23544.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	5.72	1.84	1.85	2.7	4.67	1.61	0.0	5.75	9.99
Merged-chr19-41760892-2	chr19	41760357	41761357	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13896.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	10.3	14.75	14.8	6.75	7.46	18.49	14.79	14.15	23.11
Merged-chr13-34199637-2	chr13	34199157	34200157	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	36693.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	4.0	6.45	7.4	8.77	3.73	9.65	36.97	45.54	26.85
Merged-chr2-77249872-1	chr2	77249372	77250372	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	30720.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.29	3.69	0.0	4.72	3.27	3.22	3.17	3.54	6.25
Merged-chr1-105781929-2	chr1	105781436	105782436	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	1213.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	33.75	47.0	44.4	44.53	42.92	71.54	65.48	62.35	44.97
Merged-chr18-63484902-2	chr18	63484392	63485392	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97709.0	NM_001039485	667742.0	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	4.0	0.92	7.4	6.07	1.87	8.84	4.22	3.98	6.25
Merged-chr8-25970107-1	chr8	25969607	25970607	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 4 of 17)	intron (NM_029884, intron 4 of 17)	6637.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	163.61	131.78	56.42	170.7	143.22	103.69	185.89	219.31	78.69
Merged-chr10-14391149-1	chr10	14390649	14391649	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153887.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	1.14	0.92	3.7	5.4	0.93	2.41	1.06	4.86	3.12
Merged-chr1-57393116-1	chr1	57392616	57393616	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037742, intron 5 of 7)	intron (NM_001037742, intron 5 of 7)	-13432.0	NM_001081181	68115.0	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	35.47	22.58	33.3	26.31	27.52	36.17	27.46	33.16	45.59
Merged-chr2-173218557-2	chr2	173218060	173219060	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139519, intron 1 of 3)	intron (NM_001139519, intron 1 of 3)	362.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	71.51	77.87	83.25	61.4	65.78	52.25	163.71	183.5	73.69
Merged-chr9-118873528-1	chr9	118873028	118874028	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 11 of 13)	intron (NM_001113514, intron 11 of 13)	-53008.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	6.86	1.84	10.17	3.37	3.73	4.02	3.17	5.75	2.5
Merged-chr17-44791555-1	chr17	44791055	44792055	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	14389.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	53.77	47.46	18.5	5.4	2.8	3.22	1.06	3.1	3.75
Merged-chr6-134538952-1	chr6	134538452	134539452	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	27961.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	72.08	98.15	49.95	62.75	55.51	36.17	192.23	202.07	80.56
Merged-chr10-87840239-1	chr10	87839739	87840739	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18026.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	18.31	14.28	18.5	31.71	18.19	47.42	38.02	31.39	22.48
Merged-chr1-45819153-1	chr1	45818653	45819653	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028599, intron 16 of 20)	intron (NM_028599, intron 16 of 20)	23987.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	50.91	70.04	30.52	47.9	34.06	27.33	39.08	10.17	21.23
Merged-chr8-125462423-1	chr8	125461923	125462923	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 10 of 21)	intron (NM_001357372, intron 10 of 21)	30410.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	7.44	9.68	17.57	9.45	13.53	17.68	47.53	57.92	44.97
Merged-chr16-31929099-1	chr16	31928599	31929599	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4752.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	22.31	23.96	11.1	13.49	7.93	7.23	29.57	15.48	21.23
Merged-chr14-52196818-2	chr14	52196311	52197311	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	CpG	428.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	133.29	117.96	89.72	110.65	96.1	94.04	164.76	101.7	78.07
Merged-chr18-23890462-1	chr18	23889962	23890962	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-64226.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.29	2.76	7.4	4.05	8.86	16.88	7.39	1.33	8.74
Merged-chr1-164081158-1	chr1	164080658	164081658	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011346)	TTS (NM_011346)	19082.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	18.31	12.9	9.25	5.4	7.93	4.82	28.52	34.05	16.24
Merged-chr2-22743037-1	chr2	22742537	22743537	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-31290.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	25.74	18.43	12.95	29.01	11.2	20.9	14.79	15.92	10.62
Merged-chr17-33917990-1	chr17	33917490	33918490	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_020625, exon 2 of 2)	exon (NM_020625, exon 2 of 2)	-1488.0	NM_001025313	21356.0	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	6.86	7.37	11.1	6.07	3.27	5.63	2.11	2.21	6.25
Merged-chr2-66192647-1	chr2	66192147	66193147	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001047604, intron 25 of 28)	intron (NM_001047604, intron 25 of 28)	63970.0	NM_001047604	73668.0	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	36.61	58.98	23.12	53.3	41.52	31.35	30.63	43.33	6.87
Merged-chr9-77963016-1	chr9	77962516	77963516	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	45651.0	NM_134255	68801.0	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	13.73	9.68	5.55	12.14	14.0	14.47	5.28	2.21	2.5
Merged-chr8-34908709-1	chr8	34908209	34909209	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	56981.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.15	0.92	14.8	9.45	4.67	1.61	7.39	7.07	3.12
Merged-chr11-76474649-2	chr11	76474152	76475152	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 3 of 21)	PB1|SINE|Alu	-6187.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	19.45	18.89	26.82	38.46	18.19	28.13	24.29	20.78	7.49
Merged-chr6-83069119-1	chr6	83068619	83069619	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009392, exon 2 of 3)	exon (NM_009392, exon 2 of 3)	1106.0	NM_009392	21909.0	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	3.43	0.92	3.7	6.07	1.4	0.0	1.06	1.77	1.25
Merged-chr1-173419743-1	chr1	173419243	173420243	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013779)	promoter-TSS (NM_001013779)	-861.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	143.59	169.57	117.47	130.22	108.7	128.61	209.12	254.69	124.91
Merged-chr13-60627629-1	chr13	60627129	60628129	+	774.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	B4A|SINE|B4	25418.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	45.19	38.71	42.55	138.32	92.84	118.96	129.91	140.61	63.08
Merged-chr10-22357657-2	chr10	22357155	22358155	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-4239.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	5.15	5.99	1.85	13.49	11.66	2.41	2.11	5.31	1.25
Merged-chr19-53422442-1	chr19	53421942	53422942	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31808.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	4.0	1.84	3.7	8.77	7.0	6.43	4.22	4.42	5.62
Merged-chr13-116986886-1	chr13	116986386	116987386	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	38630.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	57.78	30.87	40.7	18.89	5.6	12.86	5.28	9.29	16.86
Merged-chr6-114969905-2	chr6	114969408	114970408	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356371)	promoter-TSS (NM_001356371)	-705.0	NM_001356371	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	1.14	1.38	1.85	0.67	2.33	2.41	4.22	2.65	0.0
Merged-chr6-98959514-2	chr6	98959010	98960010	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 10 of 17)	intron (NM_001197321, intron 10 of 17)	68788.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.0	1.84	3.7	3.37	1.87	3.22	2.11	3.1	5.0
Merged-chr14-20661545-1	chr14	20661045	20662045	+	774.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001310431, exon 4 of 4)	exon (NM_001310431, exon 4 of 4)	3029.0	NM_001310432	68760.0	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	30.32	18.43	19.42	42.51	34.99	43.4	22.18	14.59	20.61
Merged-chr18-68801598-1	chr18	68801098	68802098	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62198.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	17.16	13.36	14.8	26.31	21.93	22.51	10.56	9.73	9.99
Merged-chr4-142065571-1	chr4	142065071	142066071	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	MIRc|SINE|MIR	-18727.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	4.58	10.6	9.25	12.82	10.73	18.49	15.84	10.61	8.12
Merged-chr4-40830214-1	chr4	40829714	40830714	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022305, intron 1 of 5)	intron (NM_022305, intron 1 of 5)	19924.0	NR_039584	100628614.0		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	13.16	20.74	18.5	32.39	20.99	27.33	40.14	21.67	16.86
Merged-chr16-3920993-2	chr16	3920505	3921505	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029738, intron 6 of 11)	intron (NM_029738, intron 6 of 11)	11996.0	NM_029738	76779.0	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	4.0	3.69	9.25	17.54	8.4	8.84	4.22	3.54	7.49
Merged-chr2-3475831-1	chr2	3475331	3476331	+	774.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022724)	promoter-TSS (NM_022724)	-845.0	NR_027509	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	140.15	144.23	122.09	116.73	155.81	131.82	146.81	190.57	104.92
Merged-chr9-123799998-3	chr9	123799477	123800477	+	773.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110253, intron 15 of 17)	G-rich|Low_complexity|Low_complexity	-6500.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	13.16	15.21	10.17	13.49	10.73	20.9	6.34	16.36	12.49
Merged-chr2-118534103-2	chr2	118533600	118534600	+	773.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	10487.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	6.29	6.91	11.1	7.42	7.93	10.45	23.24	7.96	5.0
Merged-chr2-158864069-3	chr2	158863579	158864579	+	773.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69272.0	NM_001291144	71715.0	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	2.29	0.92	3.7	4.72	0.0	1.61	4.22	0.0	0.0
Merged-chr10-79927535-3	chr10	79927046	79928046	+	773.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288625, intron 1 of 8)	CpG	205.0	NM_001288625	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	78.94	66.81	66.6	80.29	79.31	126.19	123.57	156.97	95.55
Merged-chr11-116732736-2	chr11	116732213	116733213	+	773.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19454.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	4.58	6.91	1.85	20.24	16.79	11.25	16.9	5.75	11.24
Merged-chr14-70800631-2	chr14	70800122	70801122	+	773.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26241.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	15.45	20.74	22.2	19.57	19.13	28.94	25.35	8.4	24.98
Merged-chr11-34030676-3	chr11	34030168	34031168	+	773.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	MER57C2|LTR|ERV1	-16260.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	163.04	127.64	86.95	178.13	66.24	106.9	161.6	97.72	93.05
Merged-chr6-145792630-2	chr6	145792132	145793132	+	773.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15751.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	10.3	10.6	4.62	6.07	9.8	2.41	4.22	6.19	2.5
Merged-chr5-73255885-4	chr5	73255405	73256405	+	773.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028194, intron 1 of 62)	CpG	713.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	64.64	25.34	56.42	49.93	43.39	41.8	60.2	28.74	35.6
Merged-chr2-5417405-2	chr2	5416896	5417896	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	ID4_|SINE|ID	38006.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	41.19	31.79	37.92	35.76	20.06	24.11	17.96	25.2	16.24
Merged-chr2-27693281-2	chr2	27692785	27693785	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-16007.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	66.36	88.01	99.89	80.97	75.11	102.08	52.81	77.38	51.84
Merged-chr12-86772188-2	chr12	86771679	86772679	+	773.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37810.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	10.87	1.38	2.77	3.37	3.27	1.61	0.0	1.77	0.0
Merged-chr6-72155842-2	chr6	72155346	72156346	+	773.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-32649.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	24.6	20.27	16.65	31.04	15.39	12.86	19.01	7.07	25.61
Merged-chr13-51696679-1	chr13	51696179	51697179	+	773.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44971.0	NM_029279	75420.0	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.57	3.69	3.7	4.72	0.47	4.02	3.17	4.42	1.25
Merged-chr11-101983066-3	chr11	101982601	101983601	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1690.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	284.88	247.44	198.87	147.76	99.83	125.39	186.94	216.66	129.28
Merged-chr7-144447286-3	chr7	144446783	144447783	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357116, intron 10 of 15)	intron (NM_001357116, intron 10 of 15)	23652.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	2.29	1.84	0.0	2.02	1.87	6.43	3.17	2.21	0.0
Merged-chr4-129365340-3	chr4	129364847	129365847	+	773.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028603, intron 2 of 4)	intron (NM_028603, intron 2 of 4)	12681.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	62.93	80.18	39.77	60.05	59.71	52.25	72.88	85.78	48.09
Merged-chr2-118491556-4	chr2	118491087	118492087	+	773.793762	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11891.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	26.89	13.82	15.72	29.69	15.86	18.49	46.47	19.46	29.98
Merged-chr17-67133825-3	chr17	67133334	67134334	+	773.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-107599.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	17.16	26.26	12.95	22.27	14.93	28.13	27.46	18.57	14.36
Merged-chrX-73593379-3	chrX	73592862	73593862	+	773.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46079.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	2.29	3.69	0.0	2.02	2.8	0.0	3.17	1.33	0.0
Merged-chr6-134172097-1	chr6	134171597	134172597	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	136397.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	71.51	78.33	83.25	81.64	52.72	75.56	66.54	69.42	47.46
Merged-chr12-100568256-2	chr12	100567764	100568764	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-47442.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.57	2.76	1.85	11.47	6.06	1.61	6.34	1.77	7.49
Merged-chr4-43041403-2	chr4	43040900	43041900	+	773.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	-1099.0	NM_001253354	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	57.21	69.12	73.07	61.4	45.25	69.13	69.71	80.47	70.57
Merged-chr4-117916600-2	chr4	117916094	117917094	+	773.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1595.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	16.02	18.43	14.8	10.12	7.0	16.88	26.4	17.24	23.73
Merged-chr5-101239527-2	chr5	101239040	101240040	+	773.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	393311.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	13.16	21.2	14.8	27.66	40.59	18.49	50.7	47.75	25.61
Merged-chr1-131481626-3	chr1	131481137	131482137	+	773.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	45724.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	30.32	15.67	6.47	22.27	10.73	17.68	20.07	15.92	19.98
Merged-chr6-65151955-3	chr6	65151446	65152446	+	773.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-7216.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	16.59	14.28	8.32	10.12	7.0	8.04	13.73	8.84	17.49
Merged-chr7-43446389-3	chr7	43445895	43446895	+	773.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075104, intron 1 of 5)	intron (NR_075104, intron 1 of 5)	2323.0	NR_075104	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	9.72	8.29	22.2	16.87	6.53	5.63	13.73	19.46	12.49
Merged-chr12-17000886-1	chr12	17000386	17001386	+	773.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172574)	promoter-TSS (NM_172574)	-768.0	NM_172574	217430.0	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	6.29	3.23	6.47	8.1	1.4	0.8	3.17	0.88	0.0
Merged-chr3-65774077-3	chr3	65773585	65774585	+	773.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	107857.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	8.58	6.45	1.85	4.05	5.6	8.04	1.06	3.54	3.12
Merged-chr12-85569700-1	chr12	85569200	85570200	+	773.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29405.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	14.87	10.14	5.55	8.77	7.0	1.61	8.45	3.98	7.49
Merged-chr11-87045637-2	chr11	87045141	87046141	+	773.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025638, intron 5 of 9)	intron (NM_025638, intron 5 of 9)	28496.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	20.02	17.05	12.95	63.42	44.32	56.27	66.54	48.64	29.35
Merged-chr11-64436136-2	chr11	64435634	64436634	+	773.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028445, exon 1 of 1)	non-coding (NR_028445, exon 1 of 1)	540.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	10.87	5.07	6.47	0.0	3.73	3.22	1.06	1.77	1.25
Merged-chr3-37414647-2	chr3	37414147	37415147	+	773.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153561, intron 2 of 4)	intron (NM_153561, intron 2 of 4)	4949.0	NM_001291044	229228.0	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	5.15	1.84	5.55	2.02	0.47	2.41	3.17	1.33	2.5
Merged-chr5-137886166-3	chr5	137885674	137886674	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14416.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	12.59	10.14	0.0	10.8	1.87	13.66	4.22	9.73	6.25
Merged-chr3-22126571-3	chr3	22126055	22127055	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	49903.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	16.02	11.98	28.67	9.45	8.4	16.08	11.62	5.75	8.74
Merged-chr2-23172485-3	chr2	23171980	23172980	+	773.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013771, intron 5 of 18)	ID_B1|SINE|B4	15975.0	NM_013771	27377.0	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	15.45	8.75	12.95	14.84	13.06	15.27	22.18	32.72	12.49
Merged-chr2-174471092-2	chr2	174470652	174471652	+	773.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025531, intron 1 of 5)	B1F1|SINE|Alu	1789.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	21.17	24.42	44.4	19.57	18.66	35.37	32.74	32.72	26.23
Merged-chr9-108284612-3	chr9	108284105	108285105	+	773.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5852.0	NM_025449	66257.0	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	4.58	2.3	5.55	1.35	2.33	4.82	6.34	6.19	3.75
Merged-chr5-107988106-3	chr5	107987625	107988625	+	773.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	22.88	48.84	14.8	25.64	28.46	30.54	40.14	32.28	27.48
Merged-chr9-14381638-4	chr9	14381159	14382159	+	773.5625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028013)	promoter-TSS (NM_028013)	-417.0	NM_028013	71946.0	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	22.88	27.65	21.27	27.66	17.73	34.56	13.73	20.78	9.37
Merged-chr2-51089915-3	chr2	51089420	51090420	+	773.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59191.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	126.42	141.0	43.47	109.3	137.15	59.48	81.33	93.74	55.58
Merged-chrX-167145927-3	chrX	167145400	167146400	+	773.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63318.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	44.62	36.86	12.95	46.56	32.66	27.33	34.85	34.49	24.36
Merged-chr2-181189113-1	chr2	181188613	181189613	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151465)	TTS (NR_151465)	1866.0	NM_001356427	66496.0	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	29.17	31.79	27.75	31.71	18.19	29.74	47.53	52.18	23.73
Merged-chr12-25100298-2	chr12	25099818	25100818	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4226.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	363.83	544.65	352.41	313.07	533.69	317.5	410.86	595.16	224.83
Merged-chr9-80723855-2	chr9	80723360	80724360	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258422.0	NM_022016	63859.0	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	3.43	5.99	3.7	4.72	7.0	0.0	1.06	0.44	3.75
Merged-chr3-146779094-2	chr3	146778592	146779592	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	2324.0	NM_001164200	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	17.16	30.87	15.72	33.06	27.99	9.65	26.4	25.65	24.36
Merged-chr11-46780018-1	chr11	46779518	46780518	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_134248)	TTS (NM_134248)	28850.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	7.44	10.14	0.0	6.07	4.2	16.08	8.45	7.96	12.49
Merged-chr13-42829682-2	chr13	42829215	42830215	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005740, intron 1 of 12)	intron (NM_001005740, intron 1 of 12)	-36532.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	195.64	205.05	38.85	212.54	205.26	139.06	158.43	213.12	94.93
Merged-chr8-123005228-2	chr8	123004721	123005721	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	37063.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	28.03	17.05	12.95	17.54	11.2	17.68	28.52	11.5	11.87
Merged-chr11-3504814-1	chr11	3504314	3505314	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172439)	promoter-TSS (NM_172439)	7.0	NM_172439	170835.0	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	9.72	3.23	3.7	2.7	7.0	9.65	1.06	3.1	1.25
Merged-chr3-152261453-2	chr3	152260962	152261962	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199465, intron 1 of 12)	intron (NM_199465, intron 1 of 12)	4333.0	NM_001357206	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	17.73	19.35	31.45	26.99	16.79	8.84	10.56	14.15	7.49
Merged-chr11-94277155-3	chr11	94276644	94277644	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34565.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	4.58	1.38	0.0	8.77	5.13	4.82	2.11	3.54	3.75
Merged-chr8-108748409-2	chr8	108747910	108748910	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	33766.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	35.47	46.08	40.7	35.76	38.72	43.4	40.14	26.09	38.72
Merged-chr2-52457386-2	chr2	52456885	52457885	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 9 of 13)	intron (NM_001037099, intron 9 of 13)	-32511.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	12.01	11.98	13.87	14.17	9.33	14.47	13.73	12.38	8.12
Merged-chr9-45608271-1	chr9	45607771	45608771	+	773.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-177039.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	5.15	4.15	0.0	2.02	2.8	3.22	3.17	2.21	5.0
Merged-chr11-99465027-3	chr11	99464531	99465531	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26878.0	NM_023256	66809.0	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.57	1.84	0.0	3.37	3.73	0.0	4.22	2.65	3.12
Merged-chrX-157483066-2	chrX	157482560	157483560	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009214, intron 1 of 10)	intron (NM_009214, intron 1 of 10)	8308.0	NM_001359185	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	6.86	7.83	1.85	4.05	1.87	11.25	6.34	3.98	3.75
Merged-chr1-77213770-2	chr1	77213237	77214237	+	773.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	283031.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	13.16	15.21	11.1	8.1	12.6	14.47	10.56	10.17	11.24
Merged-chr13-17838664-1	chr13	17838164	17839164	+	773.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33567.0	NM_027118	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	3.43	4.61	0.0	2.7	0.47	0.0	2.11	1.33	0.0
Merged-chr7-113759398-3	chr7	113758900	113759900	+	773.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6598.0	NM_145584	233744.0	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	1.14	2.76	1.85	0.67	2.33	4.02	2.11	1.33	0.62
Merged-chr15-79380656-3	chr15	79380138	79381138	+	773.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	-5338.0	NR_035464	100316695.0		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	6.86	2.3	5.55	7.42	2.33	0.8	7.39	3.1	6.87
Merged-chr3-67374092-2	chr3	67373583	67374583	+	773.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039543)	promoter-TSS (NM_001039543)	-14.0	NM_001039543	17349.0	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0.57	3.23	1.85	0.67	3.73	1.61	6.34	0.44	0.0
Merged-chr16-33830131-2	chr16	33829631	33830631	+	773.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	CpG	466.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	68.07	64.97	104.52	64.77	81.64	70.73	86.61	76.94	54.96
Merged-chr3-89764463-3	chr3	89763946	89764946	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009602, exon 1 of 6)	5' UTR (NM_009602, exon 1 of 6)	186.0	NM_009602	11444.0	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	4.58	0.46	0.0	1.35	2.8	0.0	0.0	0.88	3.75
Merged-chr13-36314450-3	chr13	36313962	36314962	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	196819.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	17.16	19.81	4.62	16.87	16.79	28.94	20.07	21.22	11.24
Merged-chr2-35232153-3	chr2	35231645	35232645	+	773.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24214.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	13.73	24.42	36.07	26.31	14.93	25.72	34.85	30.51	17.49
Merged-chr9-121309425-2	chr9	121308924	121309924	+	773.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	11922.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	11.44	6.45	3.7	13.49	6.53	8.04	31.69	14.15	15.61
Merged-chr2-125696461-2	chr2	125695943	125696943	+	773.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 1 of 11)	intron (NM_199022, intron 1 of 11)	23343.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	4.0	4.61	1.85	5.4	3.73	4.82	5.28	3.98	3.75
Merged-chr8-70627079-1	chr8	70626579	70627579	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	5016.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	19.45	11.52	13.87	19.57	14.46	34.56	12.67	6.63	9.99
Merged-chr14-54406753-1	chr14	54406253	54407253	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2719.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	60.64	61.75	46.25	76.24	76.04	70.73	71.82	45.99	26.85
Merged-chr18-78014843-3	chr18	78014355	78015355	+	773.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195633, exon 32 of 44)	exon (NM_001195633, exon 32 of 44)	42413.0	NM_001101038	620235.0	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	25.74	29.95	14.8	12.82	27.06	15.27	60.2	31.39	17.49
Merged-chr17-46637322-3	chr17	46636811	46637811	+	773.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357130, intron 6 of 15)	intron (NM_001357130, intron 6 of 15)	-7807.0	NM_175168	71461.0	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	5.72	5.07	3.7	12.82	2.33	3.22	7.39	3.54	5.0
Merged-chr15-72837946-1	chr15	72837446	72838446	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-27622.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	49.2	69.12	55.5	49.93	45.72	53.85	116.18	113.64	66.2
Merged-chr2-53013393-1	chr2	53012893	53013893	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	155525.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	11.44	8.75	5.55	11.47	15.86	17.68	16.9	14.15	2.5
Merged-chr18-56479626-1	chr18	56479126	56480126	+	773.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 5 of 13)	intron (NM_001360917, intron 5 of 13)	47494.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	6.29	14.75	9.25	22.27	17.73	23.31	10.56	12.38	9.37
Merged-chr2-103567045-3	chr2	103566537	103567537	+	773.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178890, exon 1 of 17)	exon (NM_178890, exon 1 of 17)	727.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	17.16	9.22	12.02	14.84	7.46	4.82	14.79	5.75	9.99
Merged-chr5-67607866-3	chr5	67607345	67608345	+	773.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033415)	promoter-TSS (NM_001033415)	-38.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	5.72	3.69	0.0	6.75	6.06	1.61	12.67	3.98	0.0
Merged-chrX-12123787-3	chrX	12123293	12124293	+	773.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	36553.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	17.73	9.68	13.87	16.19	7.93	12.86	8.45	7.07	5.0
Merged-chr18-75262674-6	chr18	75262206	75263206	+	773.272217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027727, intron 16 of 16)	intron (NM_027727, intron 16 of 16)	34611.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	37.18	38.71	33.3	46.56	39.65	36.17	61.26	46.43	21.23
Merged-chr7-100430142-3	chr7	100429638	100430638	+	773.261108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001017985, exon 21 of 33)	exon (NM_001017985, exon 21 of 33)	-42853.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	80.09	87.09	80.47	101.21	62.51	73.95	113.01	137.07	84.31
Merged-chr5-72235207-1	chr5	72234707	72235707	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 3 of 22)	intron (NR_003966, intron 3 of 22)	31864.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	6.86	10.14	3.7	12.14	7.0	14.47	10.56	5.75	18.11
Merged-chr7-28780281-2	chr7	28779790	28780790	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022432, intron 8 of 15)	intron (NM_022432, intron 8 of 15)	1224.0	NR_040339	100503790.0	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	1.14	2.3	0.0	4.05	4.67	4.82	5.28	5.75	6.87
Merged-chr2-35728795-2	chr2	35728295	35729295	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001114124, exon 16 of 16)	3' UTR (NM_001114124, exon 16 of 16)	32063.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	8.01	11.06	5.55	18.22	8.4	8.84	7.39	8.84	5.62
Merged-chr4-150220800-2	chr4	150220312	150221312	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16385.0	NM_023119	13806.0	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	2.86	2.3	2.77	10.8	5.6	6.43	5.28	5.75	1.25
Merged-chr9-102717644-3	chr9	102717131	102718131	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019764)	promoter-TSS (NM_019764)	-173.0	NM_019764	56332.0	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	8.58	2.3	3.7	4.72	4.67	6.43	5.28	5.31	1.25
Merged-chr4-11628207-2	chr4	11627694	11628694	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48532.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	5.15	2.76	3.7	3.37	1.87	0.0	3.17	3.98	2.5
Merged-chr4-6192192-2	chr4	6191698	6192698	+	773.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026534, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1093.0	NM_026534	68053.0	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	5.15	4.15	1.85	1.35	2.33	4.82	3.17	6.63	3.75
Merged-chr15-78582102-3	chr15	78581612	78582612	+	773.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155437)	promoter-TSS (NR_155437)	-523.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	37.76	26.73	31.45	37.11	25.66	43.4	57.03	47.75	31.23
Merged-chr10-60269857-2	chr10	60269374	60270374	+	773.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7754.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	57.78	68.2	87.87	48.58	48.98	79.58	72.88	72.52	48.71
Merged-chr7-110236333-3	chr7	110235832	110236832	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	14629.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	16.59	22.58	4.62	34.41	22.39	34.56	19.01	7.96	16.86
Merged-chr2-59387368-3	chr2	59386875	59387875	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040510)	promoter-TSS (NR_040510)	-693.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	50.91	39.63	25.9	43.86	32.19	44.21	63.37	54.39	18.11
Merged-chr17-70847261-3	chr17	70846768	70847768	+	773.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164077)	promoter-TSS (NM_001164077)	-491.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	61.21	57.14	36.07	47.23	62.05	41.8	65.48	70.3	20.61
Merged-chr6-38636937-5	chr6	38636426	38637426	+	773.209534	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033171, exon 1 of 5)	exon (NM_001033171, exon 1 of 5)	313.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	4.58	1.84	7.4	12.82	6.06	3.22	5.28	3.54	5.0
Merged-chr2-25628421-2	chr2	25627922	25628922	+	773.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007995)	promoter-TSS (NM_007995)	-448.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	77.23	57.6	83.25	133.59	82.57	78.77	145.75	154.32	65.58
Merged-chr3-65949642-2	chr3	65949133	65950133	+	773.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 5 of 10)	intron (NM_019937, intron 5 of 10)	8616.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	26.89	52.53	35.15	33.06	35.92	64.3	40.14	35.82	29.98
Merged-chr11-82820937-3	chr11	82820465	82821465	+	773.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007465, intron 1 of 6)	intron (NM_001007465, intron 1 of 6)	8078.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	14.3	20.74	17.57	36.43	25.19	31.35	14.79	27.41	13.12
Merged-chr13-75943633-3	chr13	75943057	75944057	+	773.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028493, exon 1 of 12)	5' UTR (NM_028493, exon 1 of 12)	267.0	NM_028493	73296.0	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.43	3.69	2.77	2.7	2.33	3.22	4.22	2.21	3.75
Merged-chr5-65092140-3	chr5	65091654	65092654	+	773.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15414.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	116.7	117.5	79.55	107.28	93.77	73.14	122.52	147.68	52.46
Merged-chr15-82152169-2	chr15	82151668	82152668	+	773.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	4899.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	1.72	5.53	11.1	4.05	6.53	1.61	7.39	4.42	4.37
Merged-chr6-48829830-3	chr6	48829308	48830308	+	773.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11180.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	37.76	44.24	67.52	30.36	24.26	48.23	43.3	29.18	24.36
Merged-chrX-167264244-3	chrX	167263727	167264727	+	773.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001313761, exon 1 of 3)	5' UTR (NM_001313761, exon 1 of 3)	102.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	40.04	57.6	35.15	60.72	54.11	40.19	57.03	54.83	41.22
Merged-chr2-20961485-2	chr2	20960985	20961985	+	773.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128084, intron 1 of 24)	intron (NM_001128084, intron 1 of 24)	6236.0	NM_001081364	71435.0	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	2.86	5.07	0.92	18.22	13.53	8.84	10.56	11.5	5.0
Merged-chr11-55005168-3	chr11	55004685	55005685	+	773.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001110211, exon 9 of 25)	exon (NM_001110211, exon 9 of 25)	28286.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.58	7.83	11.1	12.82	3.73	12.06	5.28	3.98	6.25
Merged-chr7-30592595-3	chr7	30592086	30593086	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021397, intron 1 of 5)	intron (NM_021397, intron 1 of 5)	356.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	13.16	11.06	16.65	10.8	8.86	11.25	6.34	8.4	5.0
Merged-chr6-114400582-3	chr6	114400085	114401085	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317126, intron 1 of 1)	intron (NM_001317126, intron 1 of 1)	2499.0	NM_001317126	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	7.44	8.29	1.85	8.77	11.2	4.82	2.11	4.86	1.25
Merged-chr4-63559563-3	chr4	63559106	63560106	+	773.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144905)	promoter-TSS (NM_144905)	-621.0	NM_144905	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	118.99	154.36	93.42	131.57	158.15	144.68	266.16	271.93	103.05
Merged-chr9-78671653-3	chr9	78671149	78672149	+	773.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153098, intron 15 of 32)	intron (NM_153098, intron 15 of 32)	56103.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	4.0	7.37	1.85	7.42	5.13	6.43	6.34	4.86	6.25
Merged-chr2-124651287-3	chr2	124650784	124651784	+	773.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-2297.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	42.9	50.23	44.4	39.13	32.19	53.05	29.57	37.58	38.72
Merged-chr1-56524896-1	chr1	56524396	56525396	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112555.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	5.15	1.38	5.55	4.72	0.47	1.61	4.22	2.65	2.5
Merged-chr10-77397143-1	chr10	77396643	77397643	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	21130.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	7.44	5.07	3.7	1.35	10.73	9.65	1.06	3.54	1.87
Merged-chr5-5409890-2	chr5	5409406	5410406	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45B|DNA|hAT-Tip100	-29655.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	3.43	4.15	5.55	6.07	8.86	4.82	6.34	4.86	5.0
Merged-chr10-39957972-1	chr10	39957472	39958472	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001113388)	TTS (NM_001113388)	2181.0	NM_001173500	100041085.0	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	6.29	7.37	0.0	12.82	5.13	5.63	4.22	5.31	2.5
Merged-chr18-61113369-2	chr18	61112873	61113873	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4095.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	39.47	41.01	23.12	29.01	34.52	54.66	51.75	47.75	21.23
Merged-chr8-22974858-1	chr8	22974358	22975358	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001277280)	promoter-TSS (NM_001277280)	22.0	NM_001277280	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.57	0.92	0.0	0.0	1.87	1.61	2.11	0.44	1.25
Merged-chr6-82881945-1	chr6	82881445	82882445	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040520)	promoter-TSS (NR_040520)	-92.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	3.43	0.46	9.25	6.75	4.2	1.61	5.28	2.65	4.37
Merged-chr6-115993952-2	chr6	115993391	115994391	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	1114.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	16.59	11.06	10.17	16.19	9.33	15.27	9.51	6.19	8.74
Merged-chr15-65737474-1	chr15	65736974	65737974	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49546.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	2.29	1.84	0.0	6.07	10.26	8.84	2.11	0.0	1.25
Merged-chr15-74932644-1	chr15	74932144	74933144	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6-int|LTR|ERV1	-22407.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	32.04	52.53	54.57	15.52	14.93	31.35	194.34	226.39	118.66
Merged-chr6-42325420-2	chr6	42324909	42325909	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113327)	promoter-TSS (NM_001113327)	-769.0	NM_001113327	76156.0	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.57	3.69	0.0	4.72	4.2	1.61	1.06	1.77	0.0
Merged-chr8-120812236-1	chr8	120811736	120812736	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73597.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.43	3.69	1.85	12.14	3.27	17.68	3.17	4.42	3.75
Merged-chr12-24595513-1	chr12	24595013	24596013	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	MTC|LTR|ERVL-MaLR	14794.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	8.01	6.45	3.7	4.72	5.13	8.04	3.17	1.33	3.12
Merged-chr14-74904593-1	chr14	74904093	74905093	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	C-rich|Low_complexity|Low_complexity	43284.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	4.0	4.15	1.85	10.12	2.33	0.0	9.51	7.07	3.12
Merged-chr9-99110448-1	chr9	99109948	99110948	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	29763.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	32.04	38.71	36.07	47.23	38.72	48.23	63.37	75.17	58.08
Merged-chr8-14851463-3	chr8	14850974	14851974	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37062.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	6.29	5.99	3.7	14.84	7.93	11.25	6.34	5.75	5.0
Merged-chr10-25286495-1	chr10	25285995	25286995	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 2 of 7)	ID_B1|SINE|B4	12668.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	39.47	36.86	13.87	48.58	45.25	27.33	40.14	48.2	29.98
Merged-chr13-90841197-1	chr13	90840697	90841697	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64158.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	6.86	4.61	2.77	3.37	0.93	0.0	1.06	0.88	3.12
Merged-chr9-94665120-1	chr9	94664620	94665620	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4772.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	29.75	30.87	34.22	27.66	26.12	35.37	22.18	32.28	23.73
Merged-chr3-151771264-1	chr3	151770764	151771764	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8373.0	NM_031367	15061.0	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	2.86	2.76	0.92	0.67	2.33	0.0	1.06	2.65	1.25
Merged-chr8-80020630-2	chr8	80020129	80021129	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	37379.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	1.72	2.76	3.7	2.7	1.87	0.0	6.34	7.07	0.0
Merged-chr2-150666040-1	chr2	150665540	150666540	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080575, intron 1 of 13)	intron (NM_080575, intron 1 of 13)	-1454.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	15.45	9.22	16.65	24.96	21.46	20.09	12.67	15.03	13.74
Merged-chr7-101947348-3	chr7	101946842	101947842	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-13485.0	NM_001162974	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	24.6	30.87	32.37	18.89	13.53	24.92	26.4	22.99	26.23
Merged-chr11-11777366-1	chr11	11776866	11777866	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31596.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	34.9	33.18	23.12	10.8	19.59	47.42	26.4	19.46	16.24
Merged-chr4-156077736-2	chr4	156077235	156078235	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17933.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	13.73	11.98	9.25	12.14	8.4	11.25	7.39	7.07	7.49
Merged-chr7-101066738-2	chr7	101066208	101067208	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42067.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	5.15	0.92	7.4	2.02	2.8	7.23	26.4	16.36	7.49
Merged-chr2-166675618-1	chr2	166675118	166676118	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	38214.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	29.75	14.75	16.65	33.74	11.66	12.06	36.97	16.36	11.24
Merged-chr3-9499616-1	chr3	9499116	9500116	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	L1MC5a|LINE|L1	96538.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	8.01	7.83	4.62	19.57	12.13	8.04	15.84	8.84	0.0
Merged-chr9-25401096-1	chr9	25400596	25401596	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26|LTR|ERVK	-80501.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	3.43	5.99	5.55	2.02	6.06	11.25	6.34	2.65	8.74
Merged-chr5-88496580-1	chr5	88496080	88497080	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017468, intron 8 of 9)	L1M2|LINE|L1	8605.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	6.29	10.14	0.0	4.72	4.2	3.22	3.17	4.86	11.87
Merged-chr10-14054451-1	chr10	14053951	14054951	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	88072.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	39.47	38.25	27.75	36.43	27.99	24.11	31.69	28.74	20.61
Merged-chr1-143919031-2	chr1	143918535	143919535	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85114.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	114.41	104.6	71.22	45.21	42.45	41.8	52.81	40.24	33.72
Merged-chr7-139281219-1	chr7	139280719	139281719	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32737.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	9.72	9.22	7.4	6.75	7.46	10.45	7.39	11.05	7.49
Merged-chr11-118459758-1	chr11	118459258	118460258	+	773.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER73|LTR|ERVL	-4763.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	149.31	78.79	76.77	186.22	72.78	119.76	166.88	116.29	102.42
Merged-chr10-41580069-1	chr10	41579569	41580569	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358562, intron 35 of 47)	intron (NM_001358562, intron 35 of 47)	12053.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	10.3	12.9	11.1	8.1	6.06	9.65	20.07	15.03	11.24
Merged-chr16-36706692-1	chr16	36706192	36707192	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	12714.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	16.02	13.36	24.05	18.22	12.6	9.65	10.56	12.38	9.37
Merged-chr2-90533211-1	chr2	90532711	90533711	+	773.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	47436.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	21.17	18.89	18.5	22.27	15.86	43.4	57.03	36.26	23.11
Merged-chr16-91695358-2	chr16	91694867	91695867	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 7 of 11)	intron (NM_026994, intron 7 of 11)	6469.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	9.15	7.83	3.7	16.87	8.86	17.68	17.96	7.96	6.25
Merged-chr18-69563265-1	chr18	69562765	69563765	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 6 of 19)	intron (NM_001361128, intron 6 of 19)	217105.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.14	4.61	1.85	2.7	4.2	4.82	5.28	3.1	2.5
Merged-chr14-32787663-1	chr14	32787163	32788163	+	773.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163616, intron 1 of 4)	MIRc|SINE|MIR	1700.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	17.73	10.14	3.7	20.24	12.6	12.86	30.63	13.27	18.74
Merged-chr2-9927049-3	chr2	9926449	9927449	+	772.974609	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027748, intron 4 of 6)	intron (NM_027748, intron 4 of 6)	20800.0	NR_152218	100126244.0	Mm.86343	NR_152218		Gm13262	-	predicted gene 13262	ncRNA	33.75	31.79	27.75	52.63	42.45	25.72	44.36	29.63	24.36
Merged-chr11-16950137-3	chr11	16949647	16950647	+	772.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110421, intron 2 of 5)	MTD|LTR|ERVL-MaLR	1135.0	NR_110421	72735.0	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	6.29	3.69	11.1	6.07	8.4	8.04	5.28	3.1	3.12
Merged-chr2-145754142-3	chr2	145753648	145754648	+	772.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033220)	TTS (NR_033220)	-31968.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.86	1.84	8.32	5.4	0.93	6.43	2.11	2.21	7.49
Merged-chr6-125410680-3	chr6	125410146	125411146	+	772.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30142.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	73.22	59.44	29.6	75.57	52.72	26.53	47.53	35.82	15.61
Merged-chr6-72428202-3	chr6	72427703	72428703	+	772.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019802, intron 10 of 14)	intron (NM_019802, intron 10 of 14)	-10480.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	5.72	2.76	5.55	5.4	2.8	1.61	5.28	2.21	4.37
Merged-chr6-59214062-2	chr6	59213595	59214595	+	772.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5225.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	5.72	10.14	9.25	8.1	10.26	11.25	6.34	4.86	12.49
Merged-chr1-164184710-2	chr1	164184213	164185213	+	772.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007976, intron 9 of 24)	intron (NM_007976, intron 9 of 24)	-32496.0	NR_037987	100503816.0	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	4.0	4.15	1.85	2.02	3.27	4.82	1.06	1.33	0.62
Merged-chr17-65737798-3	chr17	65737288	65738288	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	34964.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	82.95	101.37	60.12	129.55	104.5	110.92	98.23	110.54	50.59
Merged-chr13-59675788-3	chr13	59675248	59676248	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027307)	promoter-TSS (NM_027307)	36.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	17.73	11.52	12.95	11.47	7.46	16.88	42.25	17.69	28.73
Merged-chr7-143036632-3	chr7	143036148	143037148	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110355, intron 4 of 4)	Lx3_Mus|LINE|L1	-16102.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	73.22	53.45	67.52	41.16	21.46	29.74	60.2	46.87	39.97
Merged-chr12-71968780-3	chr12	71968299	71969299	+	772.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026102, intron 17 of 25)	intron (NM_026102, intron 17 of 25)	79256.0	NM_001286452	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	6.29	2.76	1.85	4.05	3.73	6.43	7.39	3.98	5.0
Merged-chr16-94713914-3	chr16	94713396	94714396	+	772.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102477.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.0	1.38	3.7	1.35	2.33	1.61	6.34	2.65	0.0
Merged-chr17-81064491-2	chr17	81064003	81065003	+	772.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028138, intron 1 of 9)	intron (NM_028138, intron 1 of 9)	582.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	83.52	88.01	42.55	107.95	119.43	76.36	117.24	117.17	48.09
Merged-chr6-117271743-3	chr6	117271227	117272227	+	772.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103192.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	2.86	3.69	4.62	5.4	3.27	4.82	6.34	1.77	0.0
Merged-chr12-103437840-3	chr12	103437329	103438329	+	772.8555299999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194067, intron 4 of 5)	intron (NM_194067, intron 4 of 5)	3640.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	9.72	15.67	7.4	16.19	17.73	29.74	22.18	10.61	28.73
Merged-chr8-68208043-3	chr8	68207544	68208544	+	772.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-68484.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	34.9	45.62	13.87	32.39	20.06	16.08	26.4	26.53	21.23
Merged-chr14-57611901-2	chr14	57611402	57612402	+	772.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020506, intron 9 of 22)	intron (NM_020506, intron 9 of 22)	40288.0	NR_152103	67518.0	Mm.376343	NR_152103	ENSMUSG00000097933	1700039M10Rik	-	RIKEN cDNA 1700039M10 gene	ncRNA	6.29	5.99	1.85	3.37	4.2	4.82	5.28	4.42	8.12
Merged-chr14-103826119-2	chr14	103825621	103826621	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	17580.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	18.88	14.28	1.85	39.81	32.66	49.03	30.63	26.53	16.24
Merged-chr5-38040007-2	chr5	38039507	38040507	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	777.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	41.19	70.04	29.6	49.93	42.45	18.49	40.14	28.74	18.11
Merged-chr4-133816455-2	chr4	133815957	133816957	+	772.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58274.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	57.21	62.67	51.8	49.93	30.79	37.78	34.85	33.16	31.23
Merged-chr1-72142099-2	chr1	72141594	72142594	+	772.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70213.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	3.43	2.3	0.0	4.05	0.93	3.22	1.06	3.1	3.75
Merged-chr13-99187038-3	chr13	99186552	99187552	+	772.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	2229.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	124.71	108.28	74.0	97.83	87.7	69.93	151.03	173.33	83.06
Merged-chr5-99221021-3	chr5	99220503	99221503	+	772.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	RMER19C|LTR|ERVK	31924.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	40.04	46.54	30.52	41.83	27.06	53.05	27.46	24.76	35.6
Merged-chr11-101641447-3	chr11	101640971	101641971	+	772.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	13522.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	331.22	224.86	116.54	165.31	104.5	75.56	146.81	142.82	71.82
Merged-chr9-3404612-3	chr9	3404107	3405107	+	772.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027545, intron 1 of 17)	intron (NM_027545, intron 1 of 17)	522.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	124.14	228.55	103.59	116.05	211.79	88.42	183.78	216.66	76.19
Merged-chr12-110934839-2	chr12	110934341	110935341	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175336, intron 10 of 20)	intron (NM_175336, intron 10 of 20)	43777.0	NM_001361917	74251.0	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	9.72	9.22	12.02	6.75	5.6	9.65	6.34	9.29	11.24
Merged-chr5-121453971-2	chr5	121453456	121454456	+	772.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029912, intron 1 of 9)	RMER10A|LTR|ERVL	1247.0	NM_029912	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	20.59	18.43	12.95	31.71	16.33	20.9	27.46	18.13	19.98
Merged-chr15-102283821-2	chr15	102283308	102284308	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4352.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	19.45	37.32	37.0	27.66	27.99	37.78	49.64	42.01	24.98
Merged-chr4-45010978-3	chr4	45010451	45011451	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173399, intron 1 of 1)	intron (NM_173399, intron 1 of 1)	1461.0	NM_001163284	230119.0	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	98.97	105.98	74.0	73.54	69.51	45.82	126.74	131.77	51.84
Merged-chr1-36003960-2	chr1	36003466	36004466	+	772.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64434.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	10.3	7.37	5.55	9.45	9.33	11.25	12.67	5.31	5.0
Merged-chr14-105176426-2	chr14	105175969	105176969	+	772.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134077, intron 1 of 20)	intron (NM_134077, intron 1 of 20)	858.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	91.53	76.03	61.05	99.86	74.64	40.99	111.96	53.06	54.96
Merged-chr6-56909112-3	chr6	56908623	56909623	+	772.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360963, intron 1 of 9)	intron (NM_001360963, intron 1 of 9)	-7237.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	5.72	2.76	1.85	1.35	3.27	0.0	4.22	2.21	8.12
Merged-chr13-24684683-3	chr13	24684173	24685173	+	772.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	46025.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.58	1.38	3.7	4.72	3.27	8.04	1.06	0.0	2.5
Merged-chr7-99674356-2	chr7	99673851	99674851	+	772.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	21458.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	12.59	5.99	9.25	19.57	11.66	4.82	11.62	11.5	0.0
Merged-chr2-155629500-1	chr2	155629000	155630000	+	772.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001085378, exon 29 of 42)	exon (NM_001085378, exon 29 of 42)	6620.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.0	1.84	3.7	4.72	2.33	1.61	0.0	1.33	1.25
Merged-chr10-57637839-2	chr10	57637360	57638360	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039051, intron 1 of 4)	intron (NM_001039051, intron 1 of 4)	5879.0	NM_001039051	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	20.02	24.88	18.5	33.06	19.13	34.56	13.73	14.59	18.11
Merged-chr14-31422626-3	chr14	31422119	31423119	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	-4942.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	134.43	131.78	83.25	189.6	143.68	149.5	146.81	160.51	99.92
Merged-chr5-113402871-3	chr5	113402376	113403376	+	772.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45582.0	NM_001012726	503692.0	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	6.29	3.23	5.55	5.4	2.8	8.04	5.28	1.77	2.5
Merged-chr14-57740876-2	chr14	57740389	57741389	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 1 of 7)	intron (NM_015771, intron 1 of 7)	5234.0	NM_015771	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	14.87	5.99	1.85	13.49	7.0	4.02	6.34	6.63	5.62
Merged-chr13-108268407-2	chr13	108267915	108268915	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029001, intron 3 of 7)	intron (NM_029001, intron 3 of 7)	-47922.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	16.02	10.14	3.7	6.75	12.13	4.82	6.34	15.48	9.99
Merged-chr1-119458467-2	chr1	119457965	119458965	+	772.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36217.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	4.0	2.3	0.0	0.0	1.87	0.0	2.11	1.33	1.25
Merged-chr11-120345436-4	chr11	120344836	120345836	+	772.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001313923)	TTS (NM_001313923)	2077.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	18.88	31.33	29.6	35.09	13.06	32.96	19.01	13.27	25.61
Merged-chr15-58797472-3	chr15	58796971	58797971	+	772.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25956.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	33.18	42.85	26.82	16.19	23.79	16.88	52.81	31.39	23.73
Merged-chr15-80704472-3	chr15	80703965	80704965	+	772.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6848.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.58	2.3	5.55	1.35	1.87	0.0	3.17	1.33	1.25
Merged-chr12-40544768-3	chr12	40544260	40545260	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	98707.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	52.63	50.69	60.12	48.58	32.19	40.19	31.69	33.6	25.61
Merged-chr4-137871115-3	chr4	137870626	137871626	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	L2|LINE|L2	8889.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	26.31	28.11	16.65	43.86	27.06	34.56	14.79	16.8	2.5
Merged-chr10-120366212-3	chr10	120365777	120366777	+	772.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23246.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	38.33	22.12	21.27	31.71	20.99	21.7	22.18	12.82	31.23
Merged-chr1-78894431-4	chr1	78893891	78894891	+	772.604187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	77480.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	23.45	18.43	28.67	29.01	26.12	17.68	14.79	21.22	22.48
Merged-chr9-62344551-6	chr9	62344074	62345074	+	772.592834	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	CpG	3231.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	193.35	258.96	231.24	188.25	209.93	235.51	237.64	273.26	189.86
Merged-chr11-8607324-3	chr11	8606838	8607838	+	772.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	57197.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	61.21	45.62	34.22	36.43	25.66	18.49	44.36	46.43	29.35
Merged-chr11-5780319-5	chr11	5779837	5780837	+	772.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_015577, exon 5 of 7)	non-coding (NR_015577, exon 5 of 7)	-8146.0	NM_001146309	13169.0	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	39.47	33.18	39.77	89.74	89.57	63.5	38.02	43.33	26.85
Merged-chr6-55182565-3	chr6	55182073	55183073	+	772.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7583.0	NM_009349	21743.0	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	19.45	17.51	6.47	16.19	12.13	9.65	13.73	12.82	16.24
Merged-chr16-10879661-3	chr16	10879144	10880144	+	772.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35153.0	NR_131135	545180.0	Mm.373756	NR_131135	ENSMUSG00000095369	Gm21859	-	predicted gene, 21859	ncRNA	4.0	1.84	1.85	1.35	1.87	0.0	5.28	2.65	1.87
Merged-chr11-79291453-3	chr11	79290964	79291964	+	772.537048	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-36769.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	38.9	27.65	46.25	33.06	28.92	32.96	50.7	36.7	43.09
Merged-chr16-42907601-2	chr16	42907118	42908118	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285805)	promoter-TSS (NM_001285805)	-27.0	NM_001285805	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	53.2	55.29	49.02	58.03	54.11	40.19	99.28	61.02	41.84
Merged-chr4-149160101-2	chr4	149159597	149160597	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081274, exon 6 of 13)	exon (NM_001081274, exon 6 of 13)	5985.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	17.73	7.37	1.85	8.77	13.53	12.86	7.39	10.17	12.49
Merged-chr3-60505826-1	chr3	60505326	60506326	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	intron (NM_001253711, intron 1 of 7)	4647.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	14.87	17.51	24.05	15.52	4.67	9.65	22.18	23.43	11.87
Merged-chr6-67102255-1	chr6	67101755	67102755	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64848.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	13.73	3.23	3.7	8.77	7.46	8.04	5.28	2.21	13.12
Merged-chr10-88727349-3	chr10	88726849	88727849	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3752.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	10.3	6.45	9.25	2.02	2.33	3.22	3.17	4.42	6.25
Merged-chr10-67998217-1	chr10	67997717	67998717	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359319, intron 3 of 11)	intron (NM_001359319, intron 3 of 11)	18647.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.57	3.69	1.85	5.4	2.8	4.82	2.11	2.21	1.25
Merged-chr5-143269442-1	chr5	143268942	143269942	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017467, intron 1 of 6)	intron (NM_017467, intron 1 of 6)	580.0	NM_017467	54201.0	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	14.87	6.91	12.02	20.92	11.2	18.49	11.62	7.07	8.12
Merged-chr11-82967755-1	chr11	82967255	82968255	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-7074.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	44.05	27.65	17.57	12.82	6.53	10.45	2.11	3.1	3.75
Merged-chr2-54085614-1	chr2	54085114	54086114	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023396)	promoter-TSS (NM_023396)	-62.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.0	0.46	0.0	4.72	1.4	0.0	0.0	1.77	5.0
Merged-chr7-6398733-2	chr7	6398237	6399237	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15419.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.57	3.23	5.55	0.0	2.33	4.82	6.34	3.54	2.5
Merged-chr2-173679422-2	chr2	173678920	173679920	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024436, intron 2 of 6)	intron (NM_024436, intron 2 of 6)	19575.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	12.59	13.82	10.17	4.05	5.13	4.02	26.4	15.92	6.87
Merged-chr9-83536730-2	chr9	83536227	83537227	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-11611.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	90.38	88.47	61.97	85.69	71.84	110.12	88.72	78.26	64.95
Merged-chr1-88255703-1	chr1	88255203	88256203	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 34 of 41)	intron (NM_001281466, intron 34 of 41)	13705.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	12.01	6.91	24.97	12.14	5.6	20.09	11.62	5.75	13.74
Merged-chr13-56003976-2	chr13	56003476	56004476	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131574.0	NM_012015	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	6.29	7.83	11.1	29.01	32.19	12.06	20.07	11.94	5.62
Merged-chr14-22808460-1	chr14	22807960	22808960	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265662.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.0	5.99	3.7	8.1	3.27	8.04	1.06	2.21	5.0
Merged-chr3-83002375-2	chr3	83001871	83002871	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5353.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	3.43	0.46	0.92	3.37	0.93	1.61	3.17	2.21	0.62
Merged-chr9-37232613-1	chr9	37232113	37233113	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020258, intron 17 of 17)	intron (NM_020258, intron 17 of 17)	23125.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	9.72	10.14	8.32	17.54	15.86	20.9	6.34	3.1	7.49
Merged-chr4-141445514-3	chr4	141445012	141446012	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009541, intron 1 of 15)	intron (NM_009541, intron 1 of 15)	839.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	34.9	21.2	9.25	31.04	10.73	13.66	46.47	14.15	2.5
Merged-chr15-50819624-1	chr15	50819124	50820124	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	69425.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	71.51	99.07	54.57	99.18	83.97	49.03	45.42	54.83	24.98
Merged-chr9-40811515-1	chr9	40811015	40812015	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10242.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	10.3	4.61	2.77	18.22	7.46	9.65	11.62	3.1	6.25
Merged-chr18-67366008-1	chr18	67365508	67366508	+	772.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007702, intron 3 of 4)	intron (NM_007702, intron 3 of 4)	-21905.0	NR_033214	338360.0	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	2.29	2.76	3.7	8.1	2.33	5.63	3.17	2.21	3.75
Merged-chr7-99957653-2	chr7	99957165	99958165	+	772.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	22793.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	38.33	35.48	35.15	25.64	22.86	12.86	23.24	20.34	29.98
Merged-chr2-91098799-2	chr2	91098283	91099283	+	772.483337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	2105.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	91.53	90.77	65.67	101.88	65.31	83.59	107.73	103.47	50.59
Merged-chr11-31868174-3	chr11	31867768	31868768	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2672.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	20.02	13.36	11.1	14.17	4.67	6.43	16.9	12.38	12.49
Merged-chr7-144971181-3	chr7	144970679	144971679	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31254.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.29	1.38	0.92	2.7	0.0	5.63	5.28	2.21	3.75
Merged-chr10-95075307-3	chr10	95074826	95075826	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70499.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	8.58	0.46	6.47	10.12	2.8	1.61	3.17	6.19	1.25
Merged-chr18-88892574-3	chr18	88892058	88893058	+	772.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018821, intron 1 of 2)	intron (NM_018821, intron 1 of 2)	1649.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	29.75	35.48	20.35	26.99	32.66	40.19	33.8	22.11	19.36
Merged-chr10-53435412-2	chr10	53434908	53435908	+	772.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25526.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	56.63	33.18	36.07	85.01	56.91	84.4	109.84	107.45	56.21
Merged-chr4-99179655-3	chr4	99179154	99180154	+	772.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14280.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	11.44	9.68	15.72	7.42	9.33	12.06	34.85	18.57	16.86
Merged-chr15-55564943-3	chr15	55564513	55565513	+	772.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168250, intron 5 of 16)	intron (NM_001168250, intron 5 of 16)	7605.0	NM_001168250	105837.0	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	9.15	5.99	16.65	3.37	6.06	6.43	6.34	10.61	9.99
Merged-chr16-23224808-3	chr16	23224313	23225313	+	772.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145933)	promoter-TSS (NM_145933)	73.0	NM_145933	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	27.46	22.58	21.27	42.51	48.52	57.07	60.2	38.91	31.23
Merged-chr19-32884689-2	chr19	32884196	32885196	+	772.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127119.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	18.31	32.72	30.52	29.69	24.72	53.85	29.57	31.39	25.61
Merged-chr7-73584212-2	chr7	73583717	73584717	+	772.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25822.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	37.18	33.64	40.7	31.04	22.39	32.15	40.14	31.84	29.35
Merged-chr12-81532841-2	chr12	81532325	81533325	+	772.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001309848)	promoter-TSS (NM_001309848)	86.0	NM_001309847	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	19.45	32.72	33.3	27.66	20.53	20.9	22.18	17.69	19.98
Merged-chr17-73360462-2	chr17	73359960	73360960	+	772.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033444, exon 5 of 23)	exon (NM_001033444, exon 5 of 23)	38836.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	42.9	47.92	39.77	22.94	20.53	11.25	19.01	20.34	16.86
Merged-chr2-45042315-1	chr2	45041815	45042815	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-19138.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	24.03	23.5	28.67	26.31	10.26	45.01	14.79	22.99	21.86
Merged-chr9-96889508-1	chr9	96889008	96890008	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289646)	promoter-TSS (NM_001289646)	-34.0	NM_001289647	235534.0	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	2.86	1.38	0.0	13.49	2.8	3.22	5.28	2.65	0.0
Merged-chr2-4458495-3	chr2	4457998	4458998	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	57522.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	21.17	16.59	1.85	21.59	9.8	6.43	66.54	68.54	16.86
Merged-chr17-12210888-1	chr17	12210388	12211388	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026644, intron 5 of 8)	intron (NM_026644, intron 5 of 8)	91604.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	4.0	1.84	0.0	0.0	1.4	3.22	3.17	0.88	5.62
Merged-chr13-30630201-3	chr13	30629681	30630681	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15138.0	NR_045975	75090.0	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	21.74	21.66	20.35	18.22	12.6	22.51	24.29	22.55	13.74
Merged-chr9-99379706-3	chr9	99379222	99380222	+	772.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21192.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	17.73	18.43	16.65	18.22	17.73	8.84	12.67	7.52	9.37
Merged-chr18-36530013-1	chr18	36529513	36530513	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271546, exon 5 of 22)	exon (NM_001271546, exon 5 of 22)	1861.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	6.86	2.3	6.47	4.72	1.87	1.61	2.11	1.77	1.25
Merged-chr1-5508585-1	chr1	5508085	5509085	+	772.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-79908.0	NM_001204371	18387.0	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	9.72	4.61	5.55	8.77	8.86	15.27	10.56	5.75	11.24
Merged-chr4-137807666-2	chr4	137807162	137808162	+	772.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11278.0	NM_007431	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	2.86	4.15	20.35	6.07	4.67	1.61	2.11	6.63	9.99
Merged-chr5-106887647-5	chr5	106887137	106888137	+	772.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177873, intron 20 of 39)	intron (NM_177873, intron 20 of 39)	38253.0	NM_177873	330149.0	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	12.01	12.9	20.35	5.4	7.0	9.65	8.45	7.07	17.49
Merged-chr13-20172363-3	chr13	20171884	20172884	+	772.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	81877.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	38.9	27.19	34.22	38.46	23.33	36.97	26.4	16.8	27.48
Merged-chr5-21383684-3	chr5	21383193	21384193	+	772.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11020.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	45.19	48.84	61.97	47.23	32.19	64.3	52.81	63.23	36.22
Merged-chr9-41191341-2	chr9	41190862	41191862	+	772.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14793.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	1.14	2.76	0.0	2.7	2.8	3.22	1.06	5.31	3.75
Merged-chr11-34049165-1	chr11	34048665	34049665	+	772.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 1 of 20)	intron (NM_010696, intron 1 of 20)	2237.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	118.42	125.79	123.02	130.22	92.37	91.63	151.03	128.23	92.43
Merged-chr8-71527362-2	chr8	71526888	71527888	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10049.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	16.59	8.29	13.87	0.67	0.93	3.22	17.96	11.5	5.62
Merged-chr2-168579704-1	chr2	168579204	168580204	+	772.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	10661.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	10.87	19.35	2.77	22.94	11.66	8.04	6.34	4.42	9.37
Merged-chrX-169859891-2	chrX	169859399	169860399	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-19720.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	4.58	13.36	14.8	19.57	10.26	12.06	8.45	11.05	7.49
Merged-chr13-45955909-3	chr13	45955312	45956312	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	9179.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	37.18	62.67	37.92	51.95	33.12	34.56	60.2	43.77	43.72
Merged-chr1-164586292-3	chr1	164585788	164586788	+	772.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	82981.0	NR_151593	102635083.0	Mm.98705	NR_151593	ENSMUSG00000097281	Gm26685	-	predicted gene, 26685	ncRNA	12.59	25.8	22.2	21.59	26.59	40.19	26.4	22.55	19.36
Merged-chr13-29855511-3	chr13	29855016	29856016	+	772.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308486, intron 1 of 5)	intron (NM_001308486, intron 1 of 5)	157.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	16.59	29.95	25.9	15.52	23.33	28.13	36.97	34.93	28.73
Merged-chr3-109249031-3	chr3	109248494	109249494	+	772.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-91689.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	11.44	7.83	16.65	12.14	5.6	15.27	6.34	4.42	11.24
Merged-chr19-53143284-3	chr19	53142785	53143785	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013758)	promoter-TSS (NM_013758)	529.0	NM_001164100	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	24.6	18.43	11.1	33.06	34.99	41.8	29.57	22.99	25.61
Merged-chr6-89256156-1	chr6	89255656	89256656	+	772.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29569.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	41.76	49.3	38.85	44.53	48.05	57.87	31.69	44.66	29.98
Merged-chr5-122989302-3	chr5	122988813	122989813	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045820)	promoter-TSS (NR_045820)	-41.0	NR_045820	109202.0	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	167.04	115.66	57.35	180.82	160.48	82.79	184.83	152.99	83.69
Merged-chr14-8115994-3	chr14	8115488	8116488	+	772.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	17777.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	20.02	12.9	9.25	16.87	12.13	11.25	13.73	13.27	16.24
Merged-chr7-104447916-2	chr7	104447421	104448421	+	772.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009099, intron 1 of 7)	Lx|LINE|L1	-1796.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	25.17	21.2	22.2	10.12	9.33	32.96	14.79	9.29	27.48
Merged-chr11-78080864-3	chr11	78080368	78081368	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022313)	promoter-TSS (NM_022313)	-485.0	NM_022313	57837.0	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	30.89	27.19	33.3	16.19	21.46	49.83	38.02	40.68	21.23
Merged-chr16-76680768-3	chr16	76680287	76681287	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98305.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	1.72	3.23	3.7	8.77	4.67	8.04	9.51	5.31	9.99
Merged-chr10-18995718-3	chr10	18995226	18996226	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16237.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	5.72	7.83	12.02	8.77	7.93	8.84	9.51	12.38	6.25
Merged-chr15-76285657-3	chr15	76285157	76286157	+	772.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028852, intron 4 of 4)	B2_Mm2|SINE|B2	5311.0	NR_037240	100526548.0		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	14.3	9.68	11.1	12.82	11.66	4.82	17.96	5.31	9.99
Merged-chr1-162549213-2	chr1	162548707	162549707	+	772.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144877)	promoter-TSS (NM_144877)	-862.0	NM_144877	71449.0	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	35.47	57.14	76.77	52.63	70.44	78.77	70.76	114.08	41.84
Merged-chr15-53558596-2	chr15	53558096	53559096	+	772.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	55683.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	92.67	88.47	49.95	39.13	17.73	41.8	16.9	34.49	5.62
Merged-chr4-132011651-2	chr4	132011133	132012133	+	772.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	37445.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	22.88	29.03	10.17	37.78	27.52	19.29	39.08	23.88	19.98
Merged-chr4-142045513-3	chr4	142045035	142046035	+	772.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	27637.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	16.02	10.6	32.37	14.84	12.6	14.47	32.74	12.38	8.74
Merged-chr4-43523594-3	chr4	43523042	43524042	+	772.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009416)	promoter-TSS (NM_009416)	12.0	NM_009416	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	7.44	3.69	1.85	6.75	3.27	3.22	5.28	6.19	4.37
Merged-chr5-107724901-1	chr5	107724401	107725401	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010278)	promoter-TSS (NM_010278)	-558.0	NM_010278	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	4.0	2.3	5.55	3.37	2.8	4.82	10.56	3.98	2.5
Merged-chr12-72084735-1	chr12	72084235	72085235	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026038, exon 1 of 5)	exon (NM_026038, exon 1 of 5)	578.0	NM_026038	67217.0	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	45.19	41.01	24.97	58.7	59.25	63.5	61.26	63.23	26.23
Merged-chr13-94005968-1	chr13	94005468	94006468	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51828.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	8.01	5.99	1.85	2.7	8.4	11.25	12.67	7.96	9.99
Merged-chr5-91960168-1	chr5	91959668	91960668	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026557, intron 1 of 8)	Charlie1a|DNA|hAT-Charlie	2388.0	NR_073442	68098.0	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	18.31	11.98	7.4	14.17	7.0	16.88	27.46	10.17	8.12
Merged-chr7-30309441-1	chr7	30308941	30309941	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198027, intron 1 of 6)	intron (NM_198027, intron 1 of 6)	688.0	NM_198027	233065.0	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	17.73	21.2	17.57	19.57	19.13	24.92	17.96	13.71	16.24
Merged-chr18-23431120-2	chr18	23430622	23431622	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361217, intron 1 of 20)	intron (NM_001361217, intron 1 of 20)	15713.0	NM_001361217	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	3.43	5.07	1.85	11.47	14.93	14.47	13.73	11.05	1.87
Merged-chr4-53109458-1	chr4	53108958	53109958	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	50437.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	18.88	29.03	7.4	43.18	38.25	43.4	58.09	41.12	21.86
Merged-chrX-13456834-1	chrX	13456334	13457334	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-10838.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	28.6	17.51	20.35	16.87	11.66	36.97	11.62	13.27	11.24
Merged-chr3-79664955-1	chr3	79664455	79665455	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212452, intron 9 of 17)	intron (NM_212452, intron 9 of 17)	35876.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	2.29	0.46	3.7	2.02	3.73	3.22	3.17	0.44	6.25
Merged-chr7-81235302-1	chr7	81234802	81235802	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	21498.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	18.31	17.05	16.65	39.13	11.2	32.96	20.07	10.61	13.74
Merged-chr13-64126119-2	chr13	64125624	64126624	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 1 of 11)	MTD|LTR|ERVL-MaLR	3206.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	8.58	4.61	9.25	8.1	5.6	7.23	25.35	19.9	11.87
Merged-chr3-138134002-1	chr3	138133502	138134502	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163457, exon 3 of 20)	exon (NM_001163457, exon 3 of 20)	-2349.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	5.72	4.61	0.0	12.14	12.6	3.22	15.84	4.86	3.75
Merged-chr2-3769431-1	chr2	3768931	3769931	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	55973.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.15	3.69	1.85	4.72	0.93	0.8	1.06	1.33	2.5
Merged-chr13-77135170-1	chr13	77134670	77135670	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001145676)	promoter-TSS (NM_001145676)	298.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	59.49	56.68	27.75	64.77	54.58	28.94	59.15	44.22	34.97
Merged-chr6-57703927-1	chr6	57703427	57704427	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	Lx8|LINE|L1	1472.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	25.74	41.93	24.97	53.3	45.25	25.72	40.14	67.65	36.22
Merged-chr2-90488439-1	chr2	90487939	90488939	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	B3|SINE|B2	-9265.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	141.3	117.96	108.22	129.55	99.83	102.88	165.82	244.08	94.93
Merged-chr6-17481236-3	chr6	17480735	17481735	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008591, intron 1 of 21)	intron (NM_008591, intron 1 of 21)	17278.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.15	2.76	2.77	8.1	0.93	1.61	5.28	1.77	0.0
Merged-chr1-195002952-2	chr1	195002458	195003458	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-14441.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	14.3	8.29	9.25	27.66	20.53	8.04	7.39	10.61	9.37
Merged-chr17-87639472-1	chr17	87638972	87639972	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008532, intron 2 of 9)	intron (NM_008532, intron 2 of 9)	3493.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	1.72	1.84	1.85	0.67	2.8	0.0	4.22	2.21	0.0
Merged-chr9-124015477-1	chr9	124014977	124015977	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-6494.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	49.2	59.44	47.17	72.19	56.91	70.73	51.75	44.22	53.08
Merged-chr10-89744281-2	chr10	89743792	89744792	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029166)	promoter-TSS (NM_029166)	-699.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	42.9	38.71	24.05	26.31	32.19	21.7	60.2	53.5	22.48
Merged-chr14-17982103-1	chr14	17981603	17982603	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009380, exon 1 of 7)	exon (NM_009380, exon 1 of 7)	459.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.0	4.61	5.55	4.72	5.6	12.06	7.39	7.07	9.37
Merged-chr4-28176970-2	chr4	28176470	28177470	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-636161.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	1.72	4.61	0.0	6.07	5.13	3.22	2.11	4.42	0.0
Merged-chr15-36911558-1	chr15	36911058	36912058	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	95844.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	14.3	5.99	9.25	2.7	3.73	8.04	7.39	7.07	11.87
Merged-chr4-43285632-2	chr4	43285129	43286129	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	Lx2B|LINE|L1	18470.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	18.31	23.96	16.65	16.19	9.33	10.45	3.17	0.88	6.87
Merged-chr3-41042386-1	chr3	41041886	41042886	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40660.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	4.0	2.3	0.0	3.37	2.33	4.82	1.06	3.1	5.62
Merged-chr18-38211232-1	chr18	38210732	38211732	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1470.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	4.0	2.76	0.0	5.4	2.8	8.04	4.22	1.33	5.62
Merged-chr14-25516221-3	chr14	25515714	25516714	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	MIR|SINE|MIR	-18225.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	9.72	9.68	7.4	17.54	17.26	10.45	6.34	4.86	4.37
Merged-chr12-78791423-1	chr12	78790923	78791923	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	intron (NM_019579, intron 1 of 14)	42476.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	14.3	19.81	18.5	33.06	48.05	32.96	41.19	32.28	14.36
Merged-chr6-66395347-3	chr6	66394853	66395853	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2F|LTR|ERVL	122848.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	5.72	7.37	1.85	2.7	2.8	1.61	5.28	4.86	2.5
Merged-chr5-33372589-1	chr5	33372089	33373089	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021500, exon 9 of 9)	3' UTR (NM_021500, exon 9 of 9)	-6107.0	NR_153108	71101.0	Mm.132178	NM_027674	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	8.01	7.83	8.32	16.19	3.73	16.08	10.56	4.42	5.0
Merged-chr15-6277940-3	chr15	6277454	6278454	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21835.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	18.88	23.04	5.55	16.87	18.66	12.86	14.79	11.05	3.12
Merged-chr1-62679148-2	chr1	62678648	62679648	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24169.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.86	7.83	3.7	6.07	1.4	3.22	2.11	1.33	1.25
Merged-chr7-126667671-1	chr7	126667171	126668171	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029339, intron 4 of 9)	L1MC4|LINE|L1	8747.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	10.87	12.44	3.7	14.84	9.8	9.65	4.22	10.61	5.0
Merged-chr2-153632379-1	chr2	153631879	153632879	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195390, intron 1 of 9)	intron (NM_001195390, intron 1 of 9)	402.0	NM_001195390	99311.0	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	41.76	54.83	57.35	71.52	85.84	97.26	55.98	48.2	37.47
Merged-chr12-79060955-2	chr12	79060442	79061442	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181073, intron 7 of 28)	intron (NM_181073, intron 7 of 28)	28728.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	5.72	3.69	9.25	8.77	4.67	3.22	4.22	1.77	3.75
Merged-chr4-54857201-2	chr4	54856700	54857700	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90745.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	4.0	1.84	7.4	4.05	4.2	6.43	0.0	1.33	1.25
Merged-chr18-68163107-1	chr18	68162607	68163607	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-64839.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.44	13.36	3.7	19.57	12.13	28.13	6.34	2.21	1.25
Merged-chr6-67168917-1	chr6	67168417	67169417	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-98062.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	13.73	10.14	5.55	6.07	7.93	9.65	7.39	7.52	11.24
Merged-chr11-101181065-1	chr11	101180565	101181565	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016782, intron 8 of 23)	B3A|SINE|B2	4948.0	NM_016782	53321.0	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	5.72	0.46	1.85	0.67	0.93	3.22	1.06	3.1	0.62
Merged-chr12-85094167-1	chr12	85093667	85094667	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001361239, exon 1 of 5)	exon (NM_001361239, exon 1 of 5)	1448.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	2.29	2.3	0.0	6.07	1.4	5.63	5.28	1.33	10.62
Merged-chr4-84065342-1	chr4	84064842	84065842	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20463.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	4.58	4.61	3.7	6.07	1.4	8.04	1.06	0.88	2.5
Merged-chr13-58593347-3	chr13	58592876	58593876	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	MER67A|LTR|ERV1	17501.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	2.86	0.92	2.77	5.4	1.4	3.22	6.34	4.42	3.75
Merged-chr6-16842692-1	chr6	16842192	16843192	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 4 of 6)	intron (NM_031198, intron 4 of 6)	55749.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	22.88	18.89	22.2	14.17	18.19	16.08	13.73	11.05	8.74
Merged-chr6-115468155-2	chr6	115467664	115468664	+	772.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308354, intron 6 of 7)	intron (NM_001308354, intron 6 of 7)	46098.0	NM_011146	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	42.9	50.69	45.32	38.46	28.46	36.97	26.4	35.82	23.73
Merged-chr18-68052911-2	chr18	68052383	68053383	+	772.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	119710.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.58	3.23	3.7	11.47	7.46	8.04	3.17	2.65	7.49
Merged-chr14-76942107-1	chr14	76941607	76942607	+	772.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94510.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	6.29	4.15	1.85	4.05	7.46	12.06	20.07	22.99	13.74
Merged-chr7-27488053-3	chr7	27487561	27488561	+	771.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018820, intron 1 of 1)	intron (NM_018820, intron 1 of 1)	1108.0	NM_018820	55942.0	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	54.35	64.97	76.77	41.83	56.45	61.89	80.27	79.59	60.58
Merged-chr4-147928632-3	chr4	147928075	147929075	+	771.976196	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011122, intron 5 of 18)	intron (NM_011122, intron 5 of 18)	8201.0	NM_011122	18822.0	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	20.59	21.2	28.67	23.62	17.73	44.21	60.2	37.58	41.22
Merged-chr3-69374182-3	chr3	69373685	69374685	+	771.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178726, intron 1 of 3)	MLT1A0|LTR|ERVL-MaLR	57267.0	NM_178726	242083.0	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	6.29	3.23	4.62	10.8	11.66	6.43	4.22	2.65	5.0
Merged-chr9-121385300-3	chr9	121384795	121385795	+	771.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357970, intron 1 of 15)	intron (NM_001357970, intron 1 of 15)	2501.0	NM_001357969	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	6.86	4.61	0.92	3.37	4.2	2.41	2.11	1.33	1.25
Merged-chr10-99349542-2	chr10	99349044	99350044	+	771.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86313.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.29	4.15	5.55	6.75	5.13	11.25	7.39	5.31	2.5
Merged-chr1-173456549-3	chr1	173456054	173457054	+	771.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013779, intron 5 of 8)	intron (NM_001013779, intron 5 of 8)	35950.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	8.01	4.15	9.25	11.47	0.93	11.25	5.28	2.21	3.12
Merged-chr12-85781859-3	chr12	85781355	85782355	+	771.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	35316.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	12.01	2.76	7.4	10.12	6.06	26.53	4.22	2.65	2.5
Merged-chr1-184628933-1	chr1	184628433	184629433	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-71242.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	3.43	5.99	0.0	7.42	6.06	4.82	1.06	7.07	0.0
Merged-chr4-134913588-2	chr4	134913093	134914093	+	771.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027935, intron 1 of 6)	B2_Mm2|SINE|B2	1323.0	NM_027935	71817.0	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	13.16	13.36	14.8	17.54	8.86	20.9	7.39	10.61	7.49
Merged-chr15-39840852-1	chr15	39840352	39841352	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164466, intron 4 of 9)	intron (NM_001164466, intron 4 of 9)	16618.0	NM_001164466	64705.0	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	3.43	1.38	0.0	2.02	2.33	2.41	3.17	0.88	1.25
Merged-chr4-95180596-1	chr4	95180096	95181096	+	771.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128374.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.58	1.84	1.85	4.05	2.33	14.47	1.06	1.33	3.12
Merged-chr16-36704910-3	chr16	36704436	36705436	+	771.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	10958.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	17.73	7.83	7.4	12.82	9.8	8.04	15.84	13.27	8.74
Merged-chr13-41029483-3	chr13	41028989	41029989	+	771.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 11 of 11)	intron (NM_001145802, intron 11 of 11)	13239.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	16.59	9.68	19.42	18.89	14.93	12.86	8.45	10.61	9.37
Merged-chr8-71670844-3	chr8	71670349	71671349	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	G-rich|Low_complexity|Low_complexity	908.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	4.0	2.76	5.55	13.49	6.06	16.08	14.79	8.84	8.12
Merged-chr6-43642513-3	chr6	43641982	43642982	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	L2|LINE|L2	23796.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	23.45	23.96	20.35	21.59	24.26	22.51	17.96	28.3	16.24
Merged-chr5-107611813-3	chr5	107611322	107612322	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13861.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	12.59	12.9	9.25	23.62	12.13	4.82	12.67	15.48	2.5
Merged-chr11-29871574-1	chr11	29871074	29872074	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	intron (NM_146016, intron 7 of 41)	-45906.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	21.74	20.27	40.7	33.06	20.99	31.35	11.62	19.01	16.24
Merged-chr2-122702588-1	chr2	122702088	122703088	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290993)	promoter-TSS (NM_001290993)	75.0	NM_011774	22785.0	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	3.43	2.76	0.0	13.49	5.6	4.82	2.11	2.65	1.87
Merged-chr16-57546010-3	chr16	57545484	57546484	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-3258.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	79.52	69.58	52.72	74.22	61.11	86.81	69.71	86.22	46.84
Merged-chr7-29043086-3	chr7	29042578	29043578	+	771.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009109, intron 84 of 105)	intron (NM_009109, intron 84 of 105)	40616.0	NR_035489	100316710.0		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	143.01	158.51	97.12	126.85	128.76	134.23	207.01	254.69	101.17
Merged-chr6-83683213-1	chr6	83682713	83683713	+	771.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-5356.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	13.16	13.36	14.8	20.24	24.72	40.19	30.63	21.22	21.23
Merged-chr9-40713360-2	chr9	40712876	40713876	+	771.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	27412.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	8.58	11.52	12.95	22.94	5.6	6.43	3.17	0.44	2.5
Merged-chr9-99517685-2	chr9	99517178	99518178	+	771.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001166138)	TTS (NM_001166138)	47257.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	16.59	17.05	24.05	24.96	25.66	26.53	40.14	33.6	19.36
Merged-chr10-71353907-2	chr10	71353401	71354401	+	771.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	6138.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	13.73	13.36	28.67	39.13	16.79	32.15	24.29	26.09	11.24
Merged-chr19-42094744-2	chr19	42094211	42095211	+	771.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	4276.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	19.45	25.8	12.02	16.87	12.6	11.25	7.39	3.98	5.0
Merged-chr15-3270126-2	chr15	3269621	3270621	+	771.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009155)	promoter-TSS (NM_009155)	-646.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	45.76	44.24	42.55	54.65	48.05	105.3	61.26	60.58	45.59
Merged-chr2-73487089-3	chr2	73486593	73487593	+	771.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-1340.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	136.15	135.01	106.37	174.75	130.62	107.71	124.63	148.13	86.81
Merged-chr14-55783332-7	chr14	55782842	55783842	+	771.596436	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080435, intron 2 of 25)	intron (NM_080435, intron 2 of 25)	730.0	NM_080435	104110.0	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	162.46	192.15	129.49	165.31	170.74	153.52	215.46	289.62	120.53
Merged-chr15-59652434-2	chr15	59651897	59652897	+	771.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3743.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	86.95	61.28	39.77	85.69	46.65	34.56	82.38	57.92	29.35
Merged-chr3-89317007-3	chr3	89316492	89317492	+	771.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	intron (NM_010108, intron 1 of 4)	5887.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	1.72	2.76	0.0	0.67	1.4	3.22	3.17	2.21	1.25
Merged-chr1-152870991-2	chr1	152870502	152871502	+	771.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005507, intron 1 of 21)	intron (NM_001005507, intron 1 of 21)	31643.0	NM_001359257	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	50.34	47.92	17.57	57.35	41.05	30.54	57.03	53.06	31.23
Merged-chr2-103947071-1	chr2	103946571	103947571	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10924.0	NM_001142337	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	5.15	14.75	7.4	7.42	4.67	3.22	4.22	5.31	11.24
Merged-chr2-59207409-1	chr2	59206909	59207909	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	46559.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	111.55	69.58	91.57	114.03	59.71	58.68	105.62	87.55	43.72
Merged-chr8-108625772-1	chr8	108625272	108626272	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41095.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.29	0.92	0.0	4.72	4.67	1.61	4.22	1.77	5.0
Merged-chr19-60962813-1	chr19	60962313	60963313	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	73064.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	8.01	8.75	3.7	6.75	5.6	9.65	6.34	5.31	7.49
Merged-chr3-21820339-1	chr3	21819839	21820839	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-256313.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.44	5.99	1.85	1.35	3.73	4.82	2.11	3.54	0.62
Merged-chr6-67060217-2	chr6	67059717	67060717	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-22810.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.72	6.91	7.4	0.67	1.87	0.0	2.11	2.65	5.0
Merged-chr8-114452922-2	chr8	114452424	114453424	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 4 of 8)	intron (NM_019573, intron 4 of 8)	13272.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	3.43	1.84	4.62	2.7	4.2	0.0	3.17	1.77	6.25
Merged-chr16-92705826-2	chr16	92705304	92706304	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-8475.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	21.74	19.81	25.9	26.99	20.53	25.72	17.96	19.9	12.49
Merged-chr11-88222135-1	chr11	88221635	88222635	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Eulor3|DNA?|DNA?	17747.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	6.86	2.76	4.62	4.05	1.87	1.61	3.17	2.21	1.25
Merged-chr12-5268086-4	chr12	5267560	5268560	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	107622.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	12.59	18.43	28.67	13.49	19.59	26.53	50.7	43.77	39.35
Merged-chr6-4797481-2	chr6	4796982	4797982	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50176.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	16.02	19.35	7.4	19.57	13.06	16.08	7.39	14.15	8.74
Merged-chr9-118807847-2	chr9	118807317	118808317	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	96125.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	33.18	28.57	29.6	27.66	13.53	24.11	25.35	10.61	11.24
Merged-chr7-90442275-3	chr7	90441738	90442738	+	771.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145151)	promoter-TSS (NM_145151)	-543.0	NR_073436	233490.0	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	129.28	150.68	71.22	130.22	79.31	61.89	134.14	172.45	50.59
Merged-chr5-29195860-1	chr5	29195360	29196360	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289757)	promoter-TSS (NM_001289757)	-133.0	NM_001289757	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	1.14	0.92	3.7	7.42	2.33	1.61	3.17	0.0	5.0
Merged-chr6-71478267-1	chr6	71477767	71478767	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	15.45	10.6	24.05	14.17	9.8	8.84	29.57	28.74	20.61
Merged-chr1-151499887-1	chr1	151499387	151500387	+	771.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360844, intron 1 of 8)	intron (NM_001360844, intron 1 of 8)	1104.0	NM_001360845	19821.0	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	80.09	83.4	75.85	99.86	102.17	78.77	90.83	88.88	73.07
Merged-chr16-92869860-3	chr16	92869355	92870355	+	771.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43781.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	27.46	25.8	19.42	29.01	24.72	29.74	23.24	16.36	33.1
Merged-chr12-108644759-2	chr12	108644256	108645256	+	771.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	9003.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	13.16	19.35	16.65	16.19	13.53	24.11	38.02	36.26	26.23
Merged-chr11-119229115-3	chr11	119228607	119229607	+	771.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172443)	promoter-TSS (NM_172443)	535.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	27.46	23.04	14.8	34.41	20.99	14.47	13.73	11.5	5.62
Merged-chr9-31163389-2	chr9	31162799	31163799	+	771.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 9 of 17)	intron (NM_001357698, intron 9 of 17)	-31500.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	24.6	23.5	12.02	37.78	20.99	26.53	10.56	9.29	12.49
Merged-chr8-122762804-3	chr8	122762288	122763288	+	771.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-27.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	10.87	12.44	13.87	8.1	7.46	31.35	22.18	17.24	21.86
Merged-chr19-6827040-2	chr19	6826572	6827572	+	771.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	2872.0	NR_039555	100628576.0		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA	6.29	8.29	12.02	13.49	4.67	11.25	41.19	28.3	19.36
Merged-chr14-72564122-3	chr14	72563617	72564617	+	771.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 15 of 25)	intron (NM_207636, intron 15 of 25)	145886.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	6.86	12.44	12.95	8.1	10.73	13.66	16.9	8.84	18.74
Merged-chr5-124443306-3	chr5	124442795	124443795	+	771.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	-2204.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	10.3	11.98	5.55	13.49	12.6	8.04	17.96	12.82	7.49
Merged-chr2-32095532-2	chr2	32095034	32096034	+	771.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145521)	promoter-TSS (NM_145521)	6.0	NM_001355238	227721.0	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	7.44	7.83	11.1	17.54	8.4	15.27	7.39	21.67	10.62
Merged-chr1-153431922-3	chr1	153431433	153432433	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033162, intron 2 of 9)	ORR1D2|LTR|ERVL-MaLR	6724.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	8.01	10.14	1.85	12.14	11.66	10.45	11.62	11.05	6.87
Merged-chr2-129298480-3	chr2	129297982	129298982	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040371, intron 1 of 4)	B3A|SINE|B2	1112.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	60.64	53.91	28.67	24.29	26.12	33.76	57.03	49.08	34.97
Merged-chr18-23885733-1	chr18	23885233	23886233	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-68955.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	308.91	323.01	225.69	340.06	302.76	323.12	242.92	321.01	162.38
Merged-chr4-57947115-1	chr4	57946615	57947615	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011660, intron 3 of 4)	GC_rich|Low_complexity|Low_complexity	9296.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	41.19	33.18	20.35	63.42	54.11	40.99	36.97	45.54	19.36
Merged-chr1-79629882-1	chr1	79629382	79630382	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	42090.0	NM_183027	252903.0	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	6.86	5.53	10.17	2.7	2.33	3.22	2.11	3.1	0.0
Merged-chr17-86950430-3	chr17	86949943	86950943	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2556.0	NM_029121	74915.0	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	4.58	0.46	3.7	0.0	1.87	6.43	6.34	0.44	6.25
Merged-chr9-21012027-3	chr9	21011528	21012528	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-3912.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	25.17	23.04	17.57	16.87	17.26	35.37	22.18	13.27	28.1
Merged-chr9-24517001-2	chr9	24516504	24517504	+	771.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13864.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	1.72	1.84	1.85	3.37	3.27	3.22	3.17	1.33	6.87
Merged-chr5-67608963-1	chr5	67608463	67609463	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033415, intron 1 of 1)	intron (NM_001033415, intron 1 of 1)	1080.0	NM_001033415	330096.0	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	5.72	1.84	0.0	2.02	2.33	1.61	4.22	3.54	3.75
Merged-chr8-79734507-1	chr8	79734007	79735007	+	771.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357237, intron 5 of 5)	intron (NM_001357237, intron 5 of 5)	22658.0	NM_001357236	68999.0	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	1.72	7.37	1.85	10.12	4.67	2.41	3.17	1.77	3.12
Merged-chr2-73910701-3	chr2	73910267	73911267	+	771.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301721, intron 2 of 4)	CpG	559.0	NM_175015	228033.0	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	140.15	117.5	123.02	149.11	111.5	139.86	163.71	112.31	101.17
Merged-chr12-70915354-3	chr12	70914867	70915867	+	771.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22490.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	6.86	6.45	4.62	8.1	9.33	11.25	7.39	3.1	7.49
Merged-chr13-23542645-2	chr13	23542135	23543135	+	771.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178197)	TTS (NM_178197)	809.0	NM_178197	319182.0	Mm.352273	NM_178197	ENSMUSG00000114456	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	29.17	35.94	39.77	29.69	14.93	21.7	52.81	40.68	39.35
Merged-chr13-103505223-1	chr13	103504723	103505723	+	771.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-170731.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	2.29	1.84	1.85	0.67	4.67	3.22	1.06	1.77	2.5
Merged-chr6-37197019-1	chr6	37196519	37197519	+	771.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 1 of 32)	intron (NM_001347104, intron 1 of 32)	102957.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	13.16	2.3	7.4	11.47	7.46	0.0	10.56	6.19	11.24
Merged-chr7-29129013-3	chr7	29128506	29129506	+	771.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-3855.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	6.86	7.37	4.62	3.37	3.27	7.23	10.56	4.86	11.24
Merged-chr4-136462766-5	chr4	136462293	136463293	+	771.206665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6968.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	43.48	38.25	70.3	64.77	52.72	96.45	50.7	23.88	26.23
Merged-chr9-120602946-3	chr9	120602462	120603462	+	771.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25631.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.43	4.61	0.0	11.47	11.66	10.45	5.28	0.44	1.87
Merged-chr11-59561928-3	chr11	59561436	59562436	+	771.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 7 of 9)	intron (NR_153314, intron 7 of 9)	9802.0	NM_001011789	257962.0	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	63.5	94.0	68.45	75.57	76.04	89.22	84.49	61.46	62.45
Merged-chr11-5061951-3	chr11	5061415	5062415	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144560, intron 6 of 6)	CpG	3412.0	NM_144560	78926.0	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	5.72	1.84	1.85	4.05	1.87	3.22	1.06	1.77	3.12
Merged-chr9-120098919-3	chr9	120098452	120099452	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6819.0	NM_007720	12776.0	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	3.43	1.84	7.4	5.4	0.0	5.63	3.17	1.33	1.25
Merged-chr5-97914096-3	chr5	97913600	97914600	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133738, intron 16 of 16)	intron (NM_133738, intron 16 of 16)	116862.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	6.29	5.99	3.7	8.77	7.0	1.61	3.17	2.21	0.0
Merged-chr18-80294119-3	chr18	80293604	80294604	+	771.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190373)	TTS (NM_001190373)	37798.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	8.01	8.75	24.05	11.47	6.53	11.25	5.28	5.31	6.25
Merged-chr1-36815280-2	chr1	36814764	36815764	+	771.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 25 of 40)	intron (NM_018872, intron 25 of 40)	36280.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	24.6	19.35	36.07	21.59	11.2	16.88	7.39	6.63	5.0
Merged-chr12-12323757-2	chr12	12323255	12324255	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	61616.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	9.72	5.07	7.4	5.4	1.87	4.82	3.17	0.88	7.49
Merged-chr3-9913459-2	chr3	9912972	9913972	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79793.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.0	4.15	3.7	8.77	9.33	10.45	9.51	8.4	6.25
Merged-chr19-57354893-2	chr19	57354409	57355409	+	771.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	5990.0	NR_040316	320879.0	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	12.59	10.6	18.5	16.19	7.0	16.88	17.96	5.75	13.12
Merged-chr15-62127989-3	chr15	62127501	62128501	+	771.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	88744.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	25.74	19.35	37.0	22.94	24.72	16.08	29.57	18.57	5.62
Merged-chr7-29237711-3	chr7	29237216	29238216	+	771.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110201)	promoter-TSS (NM_001110201)	122.0	NM_001357668	77254.0	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	58.92	54.83	52.72	36.43	32.66	61.89	177.44	195.44	113.66
Merged-chr4-156234849-3	chr4	156234372	156235372	+	771.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198305)	promoter-TSS (NM_198305)	-15.0	NM_198305	231003.0	Mm.423038	NM_198305	ENSMUSG00000078485	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	14.3	8.75	5.55	16.87	8.86	8.84	11.62	8.4	1.25
Merged-chr19-6487315-2	chr19	6486804	6487804	+	771.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205234, intron 11 of 22)	intron (NM_001205234, intron 11 of 22)	55766.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	9.72	8.75	18.5	13.49	5.6	8.04	7.39	8.84	8.74
Merged-chr8-123253097-3	chr8	123252582	123253582	+	771.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028200, intron 1 of 14)	intron (NM_028200, intron 1 of 14)	-1113.0	NM_020497	57247.0	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	33.18	41.93	45.32	31.71	20.99	38.58	45.42	39.8	33.1
Merged-chr1-182516976-3	chr1	182516475	182517475	+	771.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009794, intron 1 of 20)	intron (NM_009794, intron 1 of 20)	635.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	49.2	23.04	29.6	59.38	35.45	36.97	22.18	11.94	13.74
Merged-chr2-75830526-3	chr2	75830030	75831030	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1647.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	31.46	30.87	36.07	49.93	37.32	32.15	34.85	34.05	40.59
Merged-chr11-20585816-1	chr11	20585316	20586316	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	42563.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	16.02	8.29	7.4	13.49	7.46	14.47	10.56	8.84	11.24
Merged-chr8-67855835-1	chr8	67855335	67856335	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	-37540.0	NM_027626	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	10.3	9.22	11.1	6.75	3.27	3.22	6.34	2.65	3.12
Merged-chr17-10558867-1	chr17	10558367	10559367	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	Lx8|LINE|L1	102651.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	9.15	7.37	3.7	14.84	16.79	27.33	3.17	3.98	5.0
Merged-chr5-43877095-3	chr5	43876584	43877584	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	8275.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	129.28	124.87	102.67	123.47	80.71	136.64	148.92	116.29	87.43
Merged-chr12-99349871-1	chr12	99349371	99350371	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 2 of 5)	intron (NM_183186, intron 2 of 5)	100203.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	1.14	2.3	5.55	3.37	0.47	5.63	4.22	1.77	1.25
Merged-chr13-22035128-3	chr13	22034629	22035629	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175665)	promoter-TSS (NM_175665)	514.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	29.75	29.95	8.32	29.01	24.72	30.54	39.08	34.05	25.61
Merged-chr2-158613713-1	chr2	158613213	158614213	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009508, intron 1 of 1)	intron (NM_009508, intron 1 of 1)	2955.0	NM_009508	22348.0	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	2.29	1.84	0.92	2.7	0.0	1.61	2.11	1.77	3.12
Merged-chr19-5365964-1	chr19	5365464	5366464	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	399.0	NM_001038231	23825.0	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	78.37	29.95	32.37	77.59	23.33	37.78	64.43	47.75	22.48
Merged-chr11-69767237-1	chr11	69766737	69767737	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	1325.0	NM_029348	75580.0	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	347.81	335.45	210.89	375.82	294.83	262.04	418.25	369.65	196.73
Merged-chr2-180127864-1	chr2	180127364	180128364	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144500, intron 1 of 13)	intron (NM_144500, intron 1 of 13)	8498.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	12.59	18.89	33.3	23.62	23.79	25.72	4.22	2.65	9.37
Merged-chr16-87697959-1	chr16	87697459	87698459	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007520)	promoter-TSS (NM_007520)	-995.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	8.01	9.68	9.25	9.45	4.67	10.45	8.45	6.63	6.87
Merged-chr17-86668067-1	chr17	86667567	86668567	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85797.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	7.44	5.53	0.0	19.57	10.26	6.43	3.17	3.98	0.0
Merged-chr1-132312308-1	chr1	132311808	132312808	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3817.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	28.03	17.51	14.8	30.36	27.99	27.33	23.24	7.52	24.98
Merged-chr10-79696208-1	chr10	79695708	79696708	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008504)	TTS (NM_008504)	2382.0	NM_001302499	16904.0	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	8.01	5.53	3.7	8.77	3.73	0.0	7.39	3.1	5.0
Merged-chr4-55638561-2	chr4	55638047	55639047	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106072.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.0	2.3	9.25	4.72	3.27	4.82	3.17	2.65	3.12
Merged-chr5-135134329-1	chr5	135133829	135134829	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152882, intron 14 of 16)	ZP3AR|Satellite|Satellite	-15382.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	13.16	7.37	3.7	14.84	12.6	22.51	16.9	19.46	3.12
Merged-chr7-107748143-2	chr7	107747648	107748648	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001205227)	TTS (NM_001205227)	9884.0	NM_001205227	320635.0	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	2.86	5.53	0.0	2.02	4.67	3.22	3.17	0.88	1.25
Merged-chr18-46604941-1	chr18	46604441	46605441	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	7237.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	11.44	13.36	5.55	10.8	12.6	6.43	12.67	6.19	3.75
Merged-chr8-68884472-1	chr8	68883972	68884972	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	3917.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	10.3	6.45	9.25	6.75	1.4	12.06	17.96	22.11	8.12
Merged-chr2-24304713-1	chr2	24304213	24305213	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13517.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	5.15	6.91	9.25	14.17	2.8	8.84	6.34	11.05	1.87
Merged-chr3-58376936-2	chr3	58376437	58377437	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37783.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	6.29	8.29	2.77	4.05	3.73	3.22	6.34	2.21	2.5
Merged-chr14-118813227-1	chr14	118812727	118813727	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	25356.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	1.72	0.0	0.0	2.02	1.4	4.02	2.11	0.0	1.25
Merged-chr13-110558512-1	chr13	110558012	110559012	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163468.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	10.3	8.75	9.25	11.47	7.93	3.22	39.08	46.87	25.61
Merged-chr18-64599975-1	chr18	64599475	64600475	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 2 of 27)	intron (NM_001001488, intron 2 of 27)	61025.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	2.86	7.37	7.4	6.07	0.93	9.65	2.11	1.77	2.5
Merged-chr11-77980418-2	chr11	77979931	77980931	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2385.0	NM_174852	268448.0	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	21.17	18.43	15.72	14.84	20.06	20.09	12.67	16.36	13.12
Merged-chr7-34957034-2	chr7	34956538	34957538	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 7 of 14)	intron (NM_008820, intron 7 of 14)	44631.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	20.59	25.8	27.75	21.59	22.86	13.66	12.67	3.54	8.12
Merged-chr3-84843793-1	chr3	84843293	84844293	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177773, intron 1 of 13)	intron (NM_001177773, intron 1 of 13)	-20352.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	5.15	5.07	2.77	10.12	4.67	9.65	6.34	6.19	3.75
Merged-chr10-122682323-2	chr10	122681811	122682811	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	2996.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	26.31	26.73	19.42	31.04	16.79	31.35	16.9	28.74	9.37
Merged-chr3-103803075-1	chr3	103802575	103803575	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040412)	promoter-TSS (NR_040412)	-54.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	130.43	152.52	114.69	107.95	80.71	141.47	92.94	104.79	81.81
Merged-chr8-83235580-1	chr8	83235080	83236080	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 5 of 20)	intron (NM_001111304, intron 5 of 20)	-54768.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	8.58	8.29	9.25	12.14	9.8	17.68	4.22	1.77	6.25
Merged-chr9-20652596-1	chr9	20652096	20653096	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023371, intron 1 of 3)	intron (NM_023371, intron 1 of 3)	466.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	29.17	33.18	25.9	26.99	32.19	19.29	45.42	28.74	19.98
Merged-chr12-103986089-2	chr12	103985599	103986599	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166350, exon 2 of 5)	exon (NM_001166350, exon 2 of 5)	3844.0	NM_199314	380780.0	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	8.01	11.06	2.77	1.35	1.4	6.43	1.06	3.1	5.0
Merged-chr1-39418044-1	chr1	39417544	39418544	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018775, intron 2 of 19)	intron (NM_018775, intron 2 of 19)	50193.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	7.44	13.82	22.2	8.77	15.39	8.04	20.07	9.73	14.36
Merged-chr12-59040140-2	chr12	59039586	59040586	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21386.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	16.02	17.97	20.35	26.99	16.79	20.9	26.4	13.71	14.99
Merged-chr5-18043215-2	chr5	18042692	18043692	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80622.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	10.3	4.61	9.25	2.02	1.4	1.61	5.28	2.65	6.25
Merged-chr18-34595999-2	chr18	34595489	34596489	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177773, exon 1 of 6)	exon (NM_177773, exon 1 of 6)	1479.0	NM_177773	271508.0	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	2.29	1.38	4.62	6.75	1.4	1.61	4.22	1.77	3.75
Merged-chr17-67345961-2	chr17	67345446	67346446	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	B4|SINE|B4	8513.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	285.45	208.74	107.29	265.16	184.27	208.98	298.9	240.98	156.76
Merged-chr6-82042931-1	chr6	82042431	82043431	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	1303.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	36.61	23.96	26.82	54.65	48.52	36.97	1.06	6.19	0.62
Merged-chr4-46607821-1	chr4	46607321	46608321	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198664, intron 10 of 12)	intron (NM_198664, intron 10 of 12)	-5892.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.15	1.38	3.7	0.67	3.27	3.22	3.17	2.65	2.5
Merged-chr18-14813220-1	chr18	14812720	14813720	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001100449, exon 7 of 15)	exon (NM_001100449, exon 7 of 15)	29975.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	3.43	5.53	5.55	9.45	6.53	8.84	9.51	3.98	8.74
Merged-chr8-35678534-2	chr8	35678024	35679024	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89504.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	25.17	28.57	33.3	48.58	35.92	42.6	30.63	25.2	28.73
Merged-chr2-32447369-3	chr2	32446851	32447851	+	771.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-3106.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	80.66	100.45	86.95	148.44	142.29	98.87	86.61	124.69	52.46
Merged-chr14-57729574-1	chr14	57729074	57730074	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	4844.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	18.31	16.59	24.97	21.59	10.73	20.9	17.96	21.22	24.36
Merged-chr7-142389428-1	chr7	142388928	142389928	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1558.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	41.76	52.07	74.92	37.11	27.99	57.87	40.14	36.7	52.46
Merged-chr12-30922596-1	chr12	30922096	30923096	+	771.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289480, intron 2 of 8)	intron (NM_001289480, intron 2 of 8)	10927.0	NM_013709	24057.0	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.57	1.84	3.7	0.67	0.93	4.82	5.28	2.65	1.25
Merged-chr12-72389056-1	chr12	72388556	72389556	+	771.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	19998.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	4.0	1.84	6.47	0.67	1.87	0.0	8.45	3.98	9.99
Merged-chr1-172451271-3	chr1	172450758	172451758	+	770.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24102.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	33.18	22.12	8.32	16.87	17.73	8.04	13.73	15.48	16.24
Merged-chr1-131379186-3	chr1	131378718	131379718	+	770.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-99655.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	30.89	29.03	24.05	46.56	20.99	54.66	36.97	28.74	28.1
Merged-chr3-10249567-3	chr3	10249068	10250068	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357159, intron 3 of 4)	IAPEY4_LTR|LTR|ERVK	4657.0	NM_001357161	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	2.86	1.38	1.85	1.35	1.87	1.61	2.11	1.33	1.25
Merged-chr8-85557733-3	chr8	85557224	85558224	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2453.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	96.68	139.62	66.6	106.61	114.76	94.85	168.99	208.26	59.33
Merged-chr13-107810228-3	chr13	107809742	107810742	+	770.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MD3|LINE|L1	79822.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	140.73	150.68	71.22	117.4	73.71	61.89	105.62	123.81	61.2
Merged-chr7-84188366-2	chr7	84187864	84188864	+	770.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36471.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	7.44	6.91	9.25	6.75	8.86	2.41	21.12	10.17	11.24
Merged-chr1-157076407-3	chr1	157075877	157076877	+	770.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32273.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	4.0	3.23	2.77	4.05	0.0	0.8	3.17	0.0	5.62
Merged-chr14-27336626-4	chr14	27336182	27337182	+	770.887512	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	645.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	66.36	91.7	73.07	89.74	90.97	81.99	125.69	112.31	72.45
Merged-chr9-47528647-3	chr9	47528133	47529133	+	770.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1537.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	24.6	32.72	18.5	35.76	29.39	29.74	25.35	17.24	9.99
Merged-chr8-71668798-2	chr8	71668285	71669285	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 1 of 41)	intron (NM_001029873, intron 1 of 41)	2972.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	26.89	6.45	25.9	33.06	18.19	23.31	72.88	53.94	41.22
Merged-chr3-122619150-2	chr3	122618636	122619636	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 1 of 15)	CpG	578.0	NM_153118	214459.0	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	8.58	5.53	9.25	18.89	7.46	17.68	32.74	15.92	23.11
Merged-chr7-16256293-2	chr7	16255867	16256867	+	770.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	intron (NM_001173550, intron 1 of 1)	2971.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	84.09	98.61	75.85	80.97	70.91	98.87	59.15	60.58	43.09
Merged-chr15-38485636-3	chr15	38485124	38486124	+	770.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4923.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.72	2.3	1.85	2.7	1.87	1.61	6.34	6.63	5.62
Merged-chr11-117306901-3	chr11	117306401	117307401	+	770.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-24814.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	24.6	11.06	17.57	24.96	8.86	14.47	14.79	10.61	11.24
Merged-chr19-37602625-2	chr19	37602138	37603138	+	770.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	intron (NM_175353, intron 17 of 21)	52220.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	27.46	27.19	22.2	15.52	25.19	27.33	12.67	12.38	9.99
Merged-chr18-60809673-3	chr18	60809174	60810174	+	770.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 4 of 8)	intron (NM_001042605, intron 4 of 8)	-2402.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	26.31	23.04	29.6	4.72	5.13	21.7	16.9	27.86	33.72
Merged-chr1-154096295-3	chr1	154095802	154096802	+	770.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104885.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	29.75	25.34	35.15	28.34	12.13	24.11	25.35	16.8	26.23
Merged-chr8-66340985-2	chr8	66340477	66341477	+	770.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-45324.0	NM_001166375	72925.0	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	9.15	17.97	7.4	25.64	19.13	16.08	36.97	25.2	21.23
Merged-chr13-9494307-1	chr13	9493807	9494807	+	770.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	217782.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	16.59	12.9	6.47	16.19	19.59	20.9	12.67	21.22	13.74
Merged-chr1-177703035-2	chr1	177702533	177703533	+	770.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26781.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	8.01	13.36	3.7	23.62	9.33	6.43	35.91	18.13	14.36
Merged-chr9-61443606-3	chr9	61443095	61444095	+	770.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71229.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.0	5.07	1.85	14.17	4.67	4.82	11.62	5.75	1.25
Merged-chr8-128358745-9	chr8	128358301	128359301	+	770.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008737)	promoter-TSS (NM_008737)	-272.0	NM_001358959	18186.0	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	50.34	30.87	54.57	37.11	24.26	57.07	47.53	50.85	28.1
Merged-chr5-105005239-3	chr5	105004722	105005722	+	770.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22505.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	14.87	14.75	32.37	14.17	6.06	10.45	10.56	13.27	7.49
Merged-chr14-25397200-1	chr14	25396700	25397700	+	770.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61985.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.15	7.83	3.7	7.42	1.87	8.84	4.22	1.33	1.87
Merged-chr4-115980866-3	chr4	115980385	115981385	+	770.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37039.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	3.43	0.92	9.25	1.35	1.87	0.0	3.17	1.33	6.25
Merged-chr2-18917537-3	chr2	18917034	18918034	+	770.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	80587.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	19.45	20.27	7.4	17.54	5.13	17.68	10.56	6.63	5.62
Merged-chr8-72273958-1	chr8	72273458	72274458	+	770.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33940.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	5.15	4.15	1.85	13.49	8.86	10.45	8.45	3.98	7.49
Merged-chr18-53091053-2	chr18	53090561	53091561	+	770.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-85231.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	10.3	7.37	2.77	3.37	1.87	1.61	19.01	18.13	14.99
Merged-chr3-104637802-2	chr3	104637339	104638339	+	770.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	-825.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	85.81	64.51	67.52	117.4	143.68	65.11	35.91	22.11	19.36
Merged-chr13-44469814-2	chr13	44469256	44470256	+	770.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30029.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	12.59	5.53	3.7	8.1	0.93	4.82	7.39	10.17	12.49
Merged-chr6-32586373-2	chr6	32585867	32586867	+	770.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	1825.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	11.44	5.99	5.55	10.12	9.33	2.41	8.45	4.86	3.75
Merged-chr18-4170406-2	chr18	4169909	4170909	+	770.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026092, intron 3 of 4)	intron (NM_026092, intron 3 of 4)	4577.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	1.72	5.07	9.25	7.42	2.8	3.22	6.34	2.65	2.5
Merged-chr6-115823985-2	chr6	115823487	115824487	+	770.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 1 of 8)	intron (NM_001110506, intron 1 of 8)	14425.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	6.29	6.91	1.85	14.17	1.4	1.61	8.45	4.86	3.75
Merged-chr19-24225076-2	chr19	24224575	24225575	+	770.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360392)	promoter-TSS (NM_001360392)	53.0	NM_011597	21873.0	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	6.86	5.07	5.55	1.35	1.87	1.61	2.11	0.88	0.0
Merged-chr8-126527466-2	chr8	126526975	126527975	+	770.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52410.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	5.15	1.84	5.55	6.07	2.8	3.22	7.39	1.33	3.12
Merged-chr14-55014526-3	chr14	55014034	55015034	+	770.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-920.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	163.04	165.42	121.17	155.19	173.54	136.64	137.3	167.58	106.17
Merged-chr5-99541751-3	chr5	99541265	99542265	+	770.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	187295.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	8.01	4.15	14.8	6.75	5.6	5.63	5.28	5.31	3.75
Merged-chr9-31198818-3	chr9	31198335	31199335	+	770.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357698, intron 1 of 17)	intron (NM_001357698, intron 1 of 17)	13013.0	NM_001357698	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	33.18	41.47	11.1	37.11	43.39	24.11	41.19	54.83	18.74
Merged-chr18-80524855-1	chr18	80524355	80525355	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19691.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	10.3	3.69	5.55	5.4	0.0	3.22	1.06	2.65	3.12
Merged-chr4-43966020-1	chr4	43965520	43966520	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8318.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	11.44	11.52	15.72	11.47	3.73	8.04	11.62	7.96	8.74
Merged-chr16-94501700-2	chr16	94501188	94502188	+	770.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007834, intron 6 of 7)	intron (NM_007834, intron 6 of 7)	24941.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	31.46	15.21	11.1	38.46	29.86	16.88	20.07	17.69	4.37
Merged-chr14-67097127-1	chr14	67096627	67097627	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24656.0	NM_001205188	71978.0	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	5.15	2.3	3.7	1.35	2.33	6.43	4.22	5.31	5.62
Merged-chr9-56079790-2	chr9	56079296	56080296	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10180.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	10.3	8.29	1.85	17.54	11.66	19.29	19.01	4.42	16.24
Merged-chr6-13073205-3	chr6	13072702	13073702	+	770.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027992, intron 3 of 8)	L2|LINE|L2	3443.0	NM_027992	71900.0	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	10.87	4.61	11.1	12.82	6.53	11.25	11.62	5.75	9.99
Merged-chr1-182614680-1	chr1	182614180	182615180	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130890, intron 12 of 20)	intron (NM_130890, intron 12 of 20)	49673.0	NM_130890	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	2.86	6.91	7.4	4.05	1.87	1.61	2.11	2.21	8.74
Merged-chr5-67419613-1	chr5	67419113	67420113	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164806, intron 1 of 4)	intron (NM_001164806, intron 1 of 4)	8186.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	1.72	5.07	1.85	4.05	2.33	4.82	5.28	2.21	2.5
Merged-chr6-117802248-1	chr6	117801748	117802748	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38933.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	3.43	4.61	1.85	2.7	2.8	3.22	4.22	0.88	2.5
Merged-chr13-91421856-1	chr13	91421356	91422356	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33771.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	7.44	5.99	0.92	4.05	1.87	3.22	2.11	1.77	2.5
Merged-chr13-58366579-1	chr13	58366079	58367079	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11632.0	NM_175214	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	6.29	6.91	3.7	7.42	7.46	9.65	4.22	8.4	8.74
Merged-chr14-25768491-1	chr14	25767991	25768991	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	CpG	365.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	44.05	47.92	62.9	43.86	40.12	59.48	53.87	30.51	30.6
Merged-chr16-50397098-1	chr16	50396598	50397598	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	MER5A|DNA|hAT-Charlie	35291.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	44.05	50.23	38.85	49.25	38.25	56.27	50.7	57.48	23.73
Merged-chr3-129985005-1	chr3	129984505	129985505	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207209, intron 22 of 23)	intron (NM_207209, intron 22 of 23)	-14799.0	NM_001293644	66815.0	Mm.31056	NM_025779	ENSMUSG00000027994	Mcub	9030408N13Rik|Ccdc109b	mitochondrial calcium uniporter dominant negative beta subunit	protein-coding	5.72	6.45	3.7	4.72	0.93	4.82	3.17	0.88	0.0
Merged-chr8-60631714-1	chr8	60631214	60632214	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1111.0	NM_027756	71306.0	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.57	1.84	1.85	0.67	1.87	1.61	1.06	2.21	2.5
Merged-chr5-3474135-1	chr5	3473635	3474635	+	770.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-69698.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	11.44	8.29	3.7	9.45	10.73	16.88	9.51	4.42	5.62
Merged-chr9-85324406-2	chr9	85323947	85324947	+	770.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001160378, exon 3 of 3)	3' UTR (NM_001160378, exon 3 of 3)	2677.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	25.17	44.24	13.87	45.21	31.26	33.76	45.42	51.29	20.61
Merged-chr11-109380845-3	chr11	109380345	109381345	+	770.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359034)	TTS (NM_001359034)	-17191.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	22.31	24.88	18.5	36.43	20.99	22.51	16.9	19.01	8.74
Merged-chr18-36803062-3	chr18	36802625	36803625	+	770.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1362.0	NR_027885	378472.0	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	28.6	37.32	21.27	37.78	32.19	24.11	46.47	52.62	13.74
Merged-chr6-87531690-2	chr6	87531203	87532203	+	770.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	1556.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	121.28	113.35	88.8	155.19	102.17	111.73	217.57	197.65	115.54
Merged-chr8-111177990-3	chr8	111177496	111178496	+	770.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009149, intron 11 of 25)	RSINE1|SINE|B4	-32498.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	20.02	29.95	17.57	69.5	38.72	60.28	34.85	50.85	33.1
Merged-chr18-38380325-2	chr18	38379843	38380843	+	770.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38564.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	9.15	3.23	11.1	14.17	4.2	8.04	8.45	8.4	3.75
Merged-chr9-61707838-2	chr9	61707408	61708408	+	770.404785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206602.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	8.58	6.91	11.1	15.52	12.13	12.06	21.12	10.17	5.0
Merged-chr11-61498930-2	chr11	61498436	61499436	+	770.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-4670.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	109.83	97.23	74.0	66.8	67.64	73.14	91.89	96.83	43.09
Merged-chr12-99154379-2	chr12	99153897	99154897	+	770.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8411.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	8.58	3.69	8.32	4.05	5.13	3.22	10.56	3.1	3.12
Merged-chr8-126563883-3	chr8	126563381	126564381	+	770.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29555.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	36.61	32.25	16.65	39.13	30.32	20.9	26.4	26.53	14.99
Merged-chr8-125227386-2	chr8	125226905	125227905	+	770.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 10 of 12)	intron (NM_174854, intron 10 of 12)	173210.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	14.87	2.76	3.7	10.8	12.6	13.66	9.51	19.46	6.25
Merged-chr17-86187975-3	chr17	86187475	86188475	+	770.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	ORR1C2|LTR|ERVL-MaLR	20190.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	7.44	7.37	0.0	6.07	10.26	11.25	7.39	3.54	6.87
Merged-chr5-32728990-2	chr5	32728495	32729495	+	770.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17347.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	4.58	4.15	12.02	2.7	4.67	3.22	3.17	1.33	8.74
Merged-chr13-60624346-2	chr13	60623905	60624905	+	770.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	22194.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	34.32	26.73	29.6	13.49	15.39	48.23	10.56	11.05	16.86
Merged-chr11-84354556-2	chr11	84354058	84355058	+	770.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 43 of 53)	intron (NM_133360, intron 43 of 53)	158943.0	NM_019816	56321.0	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	18.88	10.6	1.85	14.17	4.67	11.25	8.45	4.42	2.5
Merged-chr1-191267912-3	chr1	191267413	191268413	+	770.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43459.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	30.89	29.49	13.87	55.33	34.52	40.99	12.67	17.24	8.12
Merged-chr6-113761924-3	chr6	113761406	113762406	+	770.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 15 of 19)	intron (NM_001036684, intron 15 of 19)	-21225.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	1.72	2.76	0.0	4.05	5.13	1.61	5.28	0.0	6.87
Merged-chr15-31611249-1	chr15	31610749	31611749	+	770.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356313, intron 5 of 5)	intron (NM_001356313, intron 5 of 5)	9133.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	7.44	4.15	14.8	3.37	2.33	7.23	9.51	2.21	1.25
Merged-chr11-75152908-3	chr11	75152433	75153433	+	770.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	15219.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	207.66	170.49	148.92	219.28	192.2	190.5	246.09	181.29	121.16
Merged-chr6-119480123-7	chr6	119479627	119480627	+	770.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133940, exon 1 of 1)	exon (NM_133940, exon 1 of 1)	459.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	60.64	46.54	53.65	44.53	48.05	72.34	43.3	53.06	49.34
Merged-chr3-100534571-3	chr3	100534068	100535068	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-45376.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	8.58	4.61	11.1	4.72	8.86	3.22	36.97	17.69	21.23
Merged-chr11-106818538-3	chr11	106818020	106819020	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166685, intron 18 of 18)	intron (NM_001166685, intron 18 of 18)	29268.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	90.38	69.58	32.37	129.55	100.3	61.09	60.2	64.56	23.11
Merged-chr6-108407625-3	chr6	108407119	108408119	+	770.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-82124.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	14.3	14.28	9.25	8.77	7.93	8.84	9.51	13.27	8.74
Merged-chr10-12957483-3	chr10	12956959	12957959	+	770.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	6800.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	28.03	26.26	24.97	33.74	17.26	26.53	38.02	48.64	22.48
Merged-chr15-59081380-5	chr15	59080893	59081893	+	770.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	CpG	633.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	65.21	53.91	11.1	115.38	102.63	97.26	47.53	45.1	27.48
Merged-chr1-36569544-3	chr1	36569087	36570087	+	770.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-11206.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	132.14	91.24	135.04	118.08	63.91	118.16	107.73	111.43	88.06
Merged-chr17-48097114-3	chr17	48096623	48097623	+	770.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6745.0	NR_110485	320638.0	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	4.58	3.23	3.7	3.37	3.27	0.0	1.06	1.77	5.0
Merged-chr4-62696115-2	chr4	62695612	62696612	+	770.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 11 of 15)	intron (NM_134257, intron 11 of 15)	22138.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.29	2.76	3.7	2.7	2.8	0.0	2.11	0.88	3.75
Merged-chr14-16519228-1	chr14	16518728	16519728	+	770.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	56248.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	12.01	9.22	9.25	1.35	2.8	1.61	3.17	3.1	2.5
Merged-chr14-79107011-3	chr14	79106506	79107506	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027906, intron 37 of 44)	intron (NM_027906, intron 37 of 44)	92184.0	NR_152203	100043765.0	Mm.435553	NR_152203	ENSMUSG00000115111	Gm4632	-	predicted gene 4632	ncRNA	1.14	3.23	0.0	1.35	1.87	3.22	2.11	1.77	1.25
Merged-chr13-5922889-3	chr13	5922386	5923386	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61397.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	12.59	9.22	7.4	5.4	4.2	0.0	6.34	3.54	1.25
Merged-chr13-107917773-3	chr13	107917277	107918277	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27713.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	9.72	7.37	1.85	5.4	2.8	6.43	4.22	6.63	3.75
Merged-chr2-113648367-3	chr2	113647875	113648875	+	770.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 13 of 16)	intron (NM_001285459, intron 13 of 16)	-36715.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.58	5.53	1.85	0.0	2.8	0.0	3.17	0.44	5.0
Merged-chr1-58720952-3	chr1	58720449	58721449	+	770.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	intron (NM_001355056, intron 1 of 8)	7663.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	81.23	99.53	71.22	119.43	92.37	93.24	116.18	101.7	62.45
Merged-chr5-121871211-4	chr5	121870665	121871665	+	770.145813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	22168.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	23.45	7.83	9.25	24.29	5.6	15.27	7.39	4.42	5.0
Merged-chr10-31400487-2	chr10	31399931	31400931	+	770.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359365, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	14004.0	NM_011509	100041294.0	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	8.58	7.37	12.02	16.87	14.46	20.9	9.51	7.96	9.37
Merged-chr3-89210945-2	chr3	89210434	89211434	+	770.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357367, intron 2 of 6)	intron (NM_001357367, intron 2 of 6)	3401.0	NM_013604	17827.0	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	221.96	184.31	112.84	215.91	158.15	109.32	197.51	183.06	69.95
Merged-chr11-78792752-2	chr11	78792257	78793257	+	770.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33838.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	9.72	7.37	5.55	16.87	12.6	4.02	16.9	18.57	5.0
Merged-chr2-44961232-3	chr2	44960753	44961753	+	770.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61924.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	29.75	21.2	24.05	18.89	19.59	24.11	15.84	16.8	21.23
Merged-chr3-21992353-3	chr3	21991863	21992863	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84289.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	50.34	52.07	69.37	58.7	53.18	52.25	70.76	55.27	30.6
Merged-chr11-99132562-3	chr11	99132072	99133072	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22505.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	7.44	2.76	0.0	1.35	4.67	1.61	8.45	0.88	5.0
Merged-chr4-132815218-3	chr4	132814737	132815737	+	770.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	-18873.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	81.8	43.77	50.87	40.48	30.79	29.74	41.19	49.96	43.09
Merged-chr10-25298376-3	chr10	25297870	25298870	+	770.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	Lx5c|LINE|L1	793.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	49.77	29.03	32.37	50.6	53.65	45.82	40.14	33.6	23.73
Merged-chr10-80313832-2	chr10	80313314	80314314	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011789, exon 14 of 14)	exon (NM_011789, exon 14 of 14)	6734.0	NM_025521	66374.0	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	9.72	5.99	3.7	7.42	4.2	5.63	3.17	1.77	3.75
Merged-chr10-95680324-1	chr10	95679824	95680824	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116178.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	30.32	17.05	5.55	25.64	22.39	13.66	15.84	18.13	8.12
Merged-chr14-73257552-1	chr14	73257052	73258052	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	19661.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	10.3	12.44	20.35	17.54	8.86	9.65	19.01	12.38	10.62
Merged-chr4-63357219-3	chr4	63356737	63357737	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013623, intron 3 of 5)	intron (NM_013623, intron 3 of 5)	1075.0	NM_013623	18407.0	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	10.3	7.37	1.85	11.47	6.53	6.43	9.51	6.63	7.49
Merged-chr7-31112202-1	chr7	31111702	31112702	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110252, intron 2 of 13)	intron (NM_001110252, intron 2 of 13)	-1205.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	71.51	50.69	27.75	53.3	31.26	25.72	62.31	29.18	34.97
Merged-chr9-116079366-3	chr9	116078856	116079856	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96007.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	9.72	10.6	15.72	15.52	12.13	8.04	6.34	9.29	6.87
Merged-chr5-65073441-2	chr5	65072941	65073941	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-34127.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	14.87	12.44	17.57	2.7	5.13	5.63	11.62	12.82	3.75
Merged-chr2-10979254-1	chr2	10978754	10979754	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-193128.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	14.87	9.22	9.25	5.4	1.87	11.25	2.11	9.29	1.25
Merged-chr6-120172785-1	chr6	120172285	120173285	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	L1MD3|LINE|L1	-21038.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	36.61	23.04	8.32	74.89	37.79	43.4	20.07	18.13	10.62
Merged-chr4-117190926-1	chr4	117190426	117191426	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-8302.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	30.32	29.49	27.75	78.27	68.58	72.34	26.4	20.34	18.74
Merged-chr8-125620417-1	chr8	125619917	125620917	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35779.0	NR_015535	75930.0	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	11.44	0.46	1.85	12.14	8.86	14.47	6.34	8.84	4.37
Merged-chr10-8736132-3	chr10	8735628	8736628	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 16 of 19)	PB1D10|SINE|Alu	149942.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	9.15	11.06	16.65	14.17	9.33	11.25	11.62	18.13	15.61
Merged-chr15-77368344-3	chr15	77367839	77368839	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30771.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	2.29	1.38	7.4	2.02	3.73	0.8	3.17	0.44	9.37
Merged-chr7-97270494-1	chr7	97269994	97270994	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 2 of 9)	intron (NM_001162477, intron 2 of 9)	55470.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	17.16	12.9	12.02	15.52	8.4	17.68	11.62	8.4	14.99
Merged-chr12-32343695-1	chr12	32343195	32344195	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-35094.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	13.16	9.22	1.85	6.75	7.46	10.45	16.9	15.92	5.0
Merged-chr11-55215335-1	chr11	55214835	55215835	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 2 of 10)	intron (NM_153139, intron 2 of 10)	10995.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	5.15	9.68	8.32	6.07	1.87	3.22	4.22	2.21	5.62
Merged-chr9-9237800-2	chr9	9237303	9238303	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045754, intron 2 of 3)	intron (NR_045754, intron 2 of 3)	1210.0	NM_027823	71544.0	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	4.58	6.45	12.95	8.77	16.33	5.63	14.79	15.03	4.37
Merged-chr14-61668152-2	chr14	61667663	61668663	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	14210.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	31.46	46.08	46.25	55.33	34.99	37.78	47.53	46.43	49.34
Merged-chr1-13293499-2	chr1	13293010	13294010	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	78919.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	20.59	24.88	37.92	15.52	11.66	19.29	29.57	37.58	14.99
Merged-chr19-41997961-1	chr19	41997461	41998461	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	16198.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	21.17	14.75	13.87	12.82	17.26	19.29	25.35	15.03	18.74
Merged-chr14-14974818-1	chr14	14974318	14975318	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195229, intron 29 of 34)	L1_Mus3|LINE|L1	154003.0	NM_001195229	674895.0	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	2.29	0.46	2.77	4.72	3.27	2.41	2.11	3.98	6.87
Merged-chr13-42515109-1	chr13	42514609	42515609	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-165690.0	NM_001302635	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	9.15	6.45	1.85	6.75	7.93	7.23	6.34	6.63	5.62
Merged-chr6-119472893-2	chr6	119472388	119473388	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	MTD|LTR|ERVL-MaLR	-5677.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	13.73	12.9	11.1	20.92	14.93	28.13	30.63	15.03	17.49
Merged-chrX-60331904-1	chrX	60331404	60332404	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	62588.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	9.15	11.98	11.1	12.14	8.4	4.82	7.39	10.17	6.25
Merged-chr5-146811264-1	chr5	146810764	146811764	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16308.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	41.76	51.15	46.25	64.1	52.72	49.03	88.72	85.78	50.59
Merged-chr4-130821121-2	chr4	130820624	130821624	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 3 of 4)	intron (NM_011520, intron 3 of 4)	28587.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	18.88	16.13	12.02	20.24	18.19	23.31	24.29	14.15	21.23
Merged-chr9-109921451-1	chr9	109920951	109921951	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10323.0	NM_001205331	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	5.15	3.23	11.1	2.02	2.33	1.61	8.45	0.0	3.75
Merged-chr5-122285833-2	chr5	122285336	122286336	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1438.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	17.73	12.44	13.87	29.01	12.6	4.02	28.52	19.46	13.12
Merged-chr16-87712207-1	chr16	87711707	87712707	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	13253.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	19.45	20.27	18.5	14.17	18.19	17.68	27.46	24.32	13.12
Merged-chr1-89753752-2	chr1	89753257	89754257	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 11 of 16)	intron (NM_001037136, intron 11 of 16)	-69865.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	2.86	2.3	1.85	2.02	3.27	0.0	4.22	1.33	1.25
Merged-chr2-151001842-1	chr2	151001342	151002342	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207204, intron 1 of 23)	(CA)n|Simple_repeat|Simple_repeat	7556.0	NM_207204	78177.0	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	9.15	5.99	16.65	7.42	9.8	8.04	10.56	4.42	5.0
Merged-chr7-62571897-1	chr7	62571397	62572397	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	-107387.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.57	0.92	4.62	2.02	2.8	0.8	1.06	1.33	0.0
Merged-chr6-134319745-2	chr6	134319248	134320248	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 4 of 8)	MLT1B|LTR|ERVL-MaLR	-76581.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	12.01	8.75	6.47	37.78	7.46	17.68	3.17	7.52	6.25
Merged-chr5-41337175-1	chr5	41336675	41337675	+	770.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	370516.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	2.86	2.3	3.7	1.35	1.4	1.61	5.28	5.75	5.0
Merged-chr16-59499379-1	chr16	59498879	59499879	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174848, intron 16 of 18)	intron (NM_174848, intron 16 of 18)	27604.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	8.58	5.53	3.7	11.47	4.67	4.82	6.34	2.65	3.75
Merged-chr14-30828278-2	chr14	30827772	30828772	+	770.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2678.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	30.32	27.65	25.9	16.19	9.8	16.88	23.24	26.53	10.62
Merged-chr17-43376730-1	chr17	43376230	43377230	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357332, intron 1 of 20)	intron (NM_001357332, intron 1 of 20)	-12736.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.29	3.23	9.25	6.75	9.33	19.29	4.22	3.54	8.12
Merged-chr4-139232274-1	chr4	139231774	139232774	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	38163.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	129.28	103.68	75.85	150.46	135.29	82.79	128.85	123.81	43.72
Merged-chr4-105716011-1	chr4	105715511	105716511	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-525202.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	15.45	15.67	13.87	9.45	12.6	30.54	19.01	17.24	4.37
Merged-chr13-94467132-1	chr13	94466632	94467632	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 15 of 26)	intron (NM_009680, intron 15 of 26)	108172.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	4.0	4.61	5.55	16.87	9.8	27.33	14.79	12.82	18.11
Merged-chr16-14387630-1	chr16	14387130	14388130	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	B1_Mus2|SINE|Alu	26072.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	4.58	3.69	0.0	1.35	1.4	5.63	5.28	0.44	5.62
Merged-chr1-60599069-1	chr1	60598569	60599569	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32304.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	5.72	3.69	1.85	4.72	5.13	0.0	2.11	4.86	3.75
Merged-chr13-24806290-1	chr13	24805790	24806790	+	770.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024473, intron 3 of 4)	intron (NM_024473, intron 3 of 4)	4633.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	48.05	51.15	27.75	62.07	41.52	35.37	117.24	116.73	36.22
Merged-chr1-184729955-2	chr1	184729458	184730458	+	769.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 3 of 4)	exon (NM_008250, exon 3 of 4)	2535.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	105.83	126.25	79.55	121.45	90.5	106.1	125.69	127.79	105.55
Merged-chr7-16057361-2	chr7	16056868	16057868	+	769.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-14477.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	17.16	17.05	29.6	28.34	27.52	29.74	43.3	57.04	14.99
Merged-chr5-7960333-2	chr5	7959824	7960824	+	769.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054098)	promoter-TSS (NM_054098)	-148.0	NM_054098	117167.0	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	6.86	4.61	7.4	0.67	1.4	1.61	0.0	1.33	3.75
Merged-chr1-78674848-3	chr1	78674349	78675349	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028817, intron 2 of 15)	intron (NM_028817, intron 2 of 15)	16409.0	NM_001136226	195434.0	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	20.59	24.42	8.32	14.17	14.0	28.13	16.9	12.38	6.25
Merged-chr1-191068591-3	chr1	191068083	191069083	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	5562.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	19.45	10.6	12.95	10.8	8.86	8.84	65.48	56.16	26.23
Merged-chr11-82175007-3	chr11	82174504	82175504	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4808.0	NM_011329	20290.0	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|P500|Scya1|Tca-3|Tca3	chemokine (C-C motif) ligand 1	protein-coding	1.72	1.38	3.7	6.07	3.27	1.61	9.51	3.1	2.5
Merged-chr7-27651123-3	chr7	27650623	27651623	+	769.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2801.0	NM_028417	73032.0	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	1.14	5.07	0.92	0.0	3.27	7.23	3.17	2.21	2.5
Merged-chr3-103279131-2	chr3	103278647	103279647	+	769.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053170)	promoter-TSS (NM_053170)	-146.0	NM_001079830	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	49.2	81.1	103.59	83.66	83.97	91.63	94.0	91.97	65.58
Merged-chr8-103940720-2	chr8	103940210	103941210	+	769.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-160915.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	17.73	19.35	24.05	40.48	41.99	59.48	40.14	46.43	31.23
Merged-chr14-75829664-3	chr14	75829204	75830204	+	769.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15260.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	7.44	9.68	16.65	19.57	5.6	12.86	9.51	8.84	12.49
Merged-chr5-149284957-3	chr5	149284400	149285400	+	769.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009663, intron 3 of 4)	MTD|LTR|ERVL-MaLR	19896.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	30.32	15.67	17.57	29.69	18.66	26.53	36.97	19.9	31.23
Merged-chr6-47781522-6	chr6	47781003	47782003	+	769.819458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22149.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	209.94	217.03	106.37	160.58	156.28	96.45	229.19	252.48	130.53
Merged-chr8-70693822-3	chr8	70693323	70694323	+	769.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3916.0	NM_010592	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	13.73	11.98	10.17	20.92	11.66	28.13	26.4	18.57	10.62
Merged-chr10-95880345-6	chr10	95879855	95880855	+	769.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60308.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	81.23	72.34	44.4	109.98	96.1	57.07	77.1	72.07	20.61
Merged-chr4-9060363-3	chr4	9059864	9060864	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-208929.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	8.01	5.53	5.55	6.75	3.73	10.45	7.39	8.4	8.74
Merged-chr4-89128166-3	chr4	89127643	89128643	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151607)	promoter-TSS (NR_151607)	83.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	5.15	2.76	0.0	2.7	4.2	1.61	4.22	4.86	5.0
Merged-chr3-149436594-3	chr3	149436091	149437091	+	769.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161854.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	9.72	1.38	3.7	4.05	4.67	1.61	7.39	7.07	5.62
Merged-chr5-90862121-2	chr5	90861624	90862624	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29121.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	5.72	4.61	0.0	3.37	7.0	1.61	6.34	1.33	1.25
Merged-chr9-116060860-2	chr9	116060361	116061361	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	114502.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.16	5.53	5.55	8.77	4.67	1.61	6.34	4.86	2.5
Merged-chr18-69655692-2	chr18	69655201	69656201	+	769.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 14 of 19)	intron (NM_001361128, intron 14 of 19)	-269858.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	11.44	17.05	21.27	27.66	14.0	39.39	6.34	5.75	18.74
Merged-chr13-76262639-2	chr13	76262138	76263138	+	769.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-122323.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	5.72	3.69	4.62	4.72	5.6	4.82	1.06	0.44	3.12
Merged-chr2-84626545-2	chr2	84626048	84627048	+	769.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	22932.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	68.07	95.38	82.32	70.17	78.37	97.26	97.17	83.57	76.19
Merged-chr2-77170572-3	chr2	77170058	77171058	+	769.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001025576)	promoter-TSS (NM_001025576)	77.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	9.15	3.69	7.4	16.19	9.8	0.0	6.34	6.19	3.75
Merged-chr9-44479825-3	chr9	44479326	44480326	+	769.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2999.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	44.05	53.45	24.05	43.18	42.45	45.82	39.08	41.56	51.84
Merged-chr1-84881710-3	chr1	84881220	84882220	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025386, intron 2 of 3)	RMER15|LTR|ERVL	41879.0	NM_025386	66153.0	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	7.44	5.99	0.0	16.19	6.06	12.86	14.79	10.61	8.12
Merged-chr16-43953196-3	chr16	43952689	43953689	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	MTD|LTR|ERVL-MaLR	25861.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	27.46	24.42	28.67	16.87	13.53	19.29	13.73	22.11	7.49
Merged-chr5-103756396-3	chr5	103755896	103756896	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	1823.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	25.74	27.65	22.2	17.54	7.0	11.25	17.96	11.94	11.24
Merged-chr18-57675274-3	chr18	57674770	57675770	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-36685.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	6.86	5.99	5.55	12.82	6.06	4.02	7.39	7.96	2.5
Merged-chr11-119089389-3	chr11	119088962	119089962	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3225.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	6.29	5.07	5.55	8.77	5.13	4.82	10.56	4.86	5.0
Merged-chr7-100501364-3	chr7	100500923	100501923	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	8065.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	105.26	70.04	53.65	82.99	63.91	92.44	108.79	118.06	49.34
Merged-chr6-115994573-1	chr6	115994073	115995073	+	769.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026376, exon 1 of 36)	exon (NM_026376, exon 1 of 36)	432.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	35.47	16.59	12.02	39.13	19.13	31.35	15.84	19.9	11.87
Merged-chr14-56876001-3	chr14	56875388	56876388	+	769.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6C|LTR|ERVK	-10715.0	NM_177627	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	27.46	15.67	16.65	22.94	15.86	21.7	29.57	17.24	15.61
Merged-chr9-53669997-2	chr9	53669502	53670502	+	769.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-2495.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	5.15	5.07	5.55	6.07	4.67	8.84	2.11	3.98	9.37
Merged-chr4-102513888-2	chr4	102513353	102514353	+	769.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-56207.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	41.76	58.98	23.12	0.0	0.0	0.0	16.9	16.8	14.99
Merged-chr12-35054603-3	chr12	35054116	35055116	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	7427.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	110.41	139.16	58.27	175.43	134.35	63.5	211.24	197.21	87.43
Merged-chr11-51349819-3	chr11	51349333	51350333	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	59913.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	4.0	2.76	3.7	5.4	4.67	19.29	3.17	1.77	4.37
Merged-chr7-30873280-3	chr7	30872788	30873788	+	769.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009845, exon 5 of 14)	exon (NM_009845, exon 5 of 14)	5740.0	NM_009845	12483.0	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	5.15	4.61	1.85	6.07	2.33	1.61	1.06	0.88	0.0
Merged-chr6-134144887-2	chr6	134144392	134145392	+	769.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	109192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.59	9.68	13.87	5.4	6.06	11.25	7.39	6.19	5.0
Merged-chr6-72868959-2	chr6	72868449	72869449	+	769.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	intron (NM_019715, intron 1 of 6)	30343.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	31.46	51.15	46.25	27.66	34.52	30.54	24.29	39.8	23.73
Merged-chr7-100465735-3	chr7	100465178	100466178	+	769.5740969999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	intron (NM_001017985, intron 32 of 32)	-7313.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	74.37	60.36	55.5	66.8	57.85	57.87	36.97	30.95	23.11
Merged-chr12-110771076-3	chr12	110770557	110771557	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	ORR1A4|LTR|ERVL-MaLR	33125.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	12.01	9.22	5.55	11.47	6.06	16.08	11.62	11.94	6.25
Merged-chr8-117294624-3	chr8	117294101	117295101	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37582.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	29.75	27.65	25.9	22.94	16.79	32.96	11.62	23.88	28.1
Merged-chr7-84151376-3	chr7	84150831	84151831	+	769.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133722, exon 1 of 3)	exon (NM_133722, exon 1 of 3)	562.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	10.87	12.9	9.25	12.82	12.13	13.66	48.58	20.34	29.35
Merged-chr3-107864119-3	chr3	107863638	107864638	+	769.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13092.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	4.0	0.46	0.0	2.7	1.87	3.22	4.22	0.88	1.25
Merged-chr8-124232009-4	chr8	124231479	124232479	+	769.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	CpG	585.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	37.76	42.85	90.65	41.16	34.52	62.7	63.37	40.68	67.45
Merged-chr10-50910569-1	chr10	50910069	50911069	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011376, exon 8 of 11)	exon (NM_011376, exon 8 of 11)	14918.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	1.14	1.84	1.85	4.72	0.93	1.61	2.11	0.44	3.12
Merged-chr8-39309440-2	chr8	39308974	39309974	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	intron (NR_044988, intron 2 of 3)	11494.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	33.75	41.93	12.95	15.52	16.79	9.65	1.06	2.21	1.25
Merged-chr1-152720798-2	chr1	152720301	152721301	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-29750.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	10.87	7.37	8.32	13.49	3.73	8.04	10.56	1.77	8.74
Merged-chr1-112451762-1	chr1	112451262	112452262	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-586844.0	NM_001081316	319901.0	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	5.15	2.76	1.85	1.35	0.93	4.82	0.0	1.77	1.25
Merged-chr13-49194717-1	chr13	49194217	49195217	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013610, intron 2 of 3)	intron (NM_013610, intron 2 of 3)	7170.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	22.88	38.25	50.87	32.39	27.52	65.11	51.75	37.58	42.47
Merged-chr1-77462026-1	chr1	77461526	77462526	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 3 of 17)	intron (NM_007936, intron 3 of 17)	34742.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	3.43	6.91	16.65	11.47	7.46	14.47	9.51	2.21	5.0
Merged-chr13-107856243-2	chr13	107855745	107856745	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33819.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	118.42	115.66	79.55	103.23	60.18	54.66	156.32	169.79	79.32
Merged-chr16-11026038-1	chr16	11025538	11026538	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17140.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	10.87	5.53	0.0	7.42	4.2	4.82	1.06	0.0	5.0
Merged-chr2-122773024-1	chr2	122772524	122773524	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027888, intron 1 of 9)	intron (NR_027888, intron 1 of 9)	1311.0	NR_027888	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	8.58	6.91	11.1	8.77	7.0	10.45	5.28	6.19	8.74
Merged-chr11-53436512-3	chr11	53436016	53437016	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008110, intron 1 of 1)	intron (NM_008110, intron 1 of 1)	3230.0	NM_008110	14566.0	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	15.45	15.21	28.67	14.84	16.79	40.19	14.79	21.67	17.49
Merged-chrX-103553431-1	chrX	103552931	103553931	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7931.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	5.72	14.75	5.55	10.12	6.53	20.9	3.17	6.63	17.49
Merged-chr10-79856017-2	chr10	79855507	79856507	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077363, intron 1 of 13)	intron (NM_001077363, intron 1 of 13)	-1036.0	NR_029447	414101.0	Mm.401339	NR_029447	ENSMUSG00000091994	E130317F20Rik	-	RIKEN cDNA E130317F20 gene	ncRNA	147.59	231.77	189.62	174.75	192.67	202.55	208.07	281.22	159.25
Merged-chr12-4450217-1	chr12	4449717	4450717	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	26965.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.58	5.53	6.47	6.75	11.2	6.43	9.51	5.75	9.99
Merged-chr1-181861303-2	chr1	181860779	181861779	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18878.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	75.51	86.63	91.57	31.04	16.79	24.92	51.75	61.02	40.59
Merged-chr9-66114117-2	chr9	66113607	66114607	+	769.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019727, intron 1 of 14)	intron (NM_019727, intron 1 of 14)	10779.0	NM_019727	56440.0	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	56.06	42.85	45.32	50.6	39.65	44.21	30.63	35.37	28.73
Merged-chr17-87256474-2	chr17	87255978	87256978	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 4 of 4)	intron (NM_176808, intron 4 of 4)	9469.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	163.04	170.95	133.19	222.66	198.27	154.33	104.56	115.41	74.32
Merged-chr13-93989448-3	chr13	93988924	93989924	+	769.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68372.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	8.58	5.53	5.55	8.77	3.27	4.02	6.34	3.1	1.25
Merged-chr2-145794706-3	chr2	145794204	145795204	+	769.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	8588.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	5.72	10.14	0.92	10.8	6.06	11.25	6.34	6.19	3.75
Merged-chr5-114826435-3	chr5	114825971	114826971	+	769.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3003.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	8.01	3.69	5.55	6.07	2.8	8.84	8.45	3.98	4.37
Merged-chr18-60816129-4	chr18	60815592	60816592	+	769.4375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001198984, exon 23 of 26)	exon (NM_001198984, exon 23 of 26)	4016.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	25.74	25.8	39.77	10.12	16.79	27.33	2.11	7.52	7.49
Merged-chr19-45805131-3	chr19	45804638	45805638	+	769.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	7153.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	8.01	5.99	3.7	6.75	3.73	2.41	2.11	7.96	7.49
Merged-chr14-120480658-2	chr14	120480164	120481164	+	769.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029519, intron 1 of 1)	intron (NM_029519, intron 1 of 1)	2203.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	4.0	6.45	6.47	12.82	7.0	17.68	5.28	8.84	3.75
Merged-chr8-56865736-1	chr8	56865236	56866236	+	769.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	314602.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	13.16	9.68	7.4	18.22	10.26	8.04	10.56	5.31	6.87
Merged-chr3-84942380-1	chr3	84941880	84942880	+	769.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-9831.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	10.3	14.28	7.4	10.12	9.8	20.9	11.62	3.54	8.12
Merged-chr12-112761621-2	chr12	112761121	112762121	+	769.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178911, intron 1 of 10)	intron (NM_178911, intron 1 of 10)	966.0	NM_178911	104759.0	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	147.02	162.2	143.37	107.28	121.29	118.96	194.34	186.59	77.44
Merged-chr6-129200111-3	chr6	129199601	129200601	+	769.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	19486.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	37.18	54.83	51.8	54.65	52.25	57.07	30.63	24.32	35.6
Merged-chr3-22034756-2	chr3	22034257	22035257	+	769.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41895.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.43	12.9	6.47	6.07	3.73	7.23	15.84	9.73	18.11
Merged-chr9-67424251-1	chr9	67423751	67424751	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	135452.0	NM_001081242	70549.0	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	3.43	3.23	10.17	11.47	12.6	14.47	3.17	3.54	1.25
Merged-chr1-152556221-1	chr1	152555721	152556721	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	68996.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	102.4	86.63	99.89	85.01	60.65	98.87	65.48	59.25	68.7
Merged-chr12-102284403-1	chr12	102283903	102284903	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	762.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	8.01	10.14	12.02	8.77	7.46	10.45	15.84	7.52	9.99
Merged-chr7-139303469-3	chr7	139302959	139303959	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54977.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	5.15	3.23	1.85	4.05	0.93	0.0	5.28	0.88	2.5
Merged-chr3-89964475-3	chr3	89963925	89964925	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	6.29	5.53	9.25	10.8	5.13	8.04	6.34	1.33	1.25
Merged-chr10-30777930-3	chr10	30777446	30778446	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	25380.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	45.76	59.44	9.25	46.56	45.72	28.94	34.85	33.16	8.74
Merged-chr18-26022843-1	chr18	26022343	26023343	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268686.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.72	8.29	3.7	6.75	6.06	4.82	2.11	4.42	0.0
Merged-chrX-100774475-3	chrX	100773974	100774974	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177779)	promoter-TSS (NM_001177779)	-21.0	NM_001177779	53310.0	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs large MAGUK scaffold protein 3	protein-coding	4.0	3.23	0.92	1.35	2.8	0.0	3.17	1.33	0.0
Merged-chr9-99112279-3	chr9	99111781	99112781	+	769.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	27930.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	45.76	41.01	57.35	47.23	40.12	36.17	53.87	64.56	36.85
Merged-chr19-32292206-1	chr19	32291706	32292706	+	769.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	57110.0	NM_001168525	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	43.48	50.69	18.5	38.46	33.59	25.72	17.96	10.17	3.75
Merged-chr7-109646689-3	chr7	109646198	109647198	+	769.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2a|DNA|hAT-Charlie	-29551.0	NM_029811	76954.0	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	7.44	11.06	3.7	12.14	7.46	8.84	3.17	6.19	7.49
Merged-chr14-27444000-3	chr14	27443501	27444501	+	769.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028945, intron 6 of 23)	Lx7|LINE|L1	15167.0	NM_001114879	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	10.3	5.53	7.4	8.77	4.2	4.82	7.39	3.98	7.49
Merged-chr13-96455539-2	chr13	96455015	96456015	+	769.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 2 of 13)	intron (NM_001042714, intron 2 of 13)	15645.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	9.15	6.45	4.62	10.8	9.8	8.84	10.56	5.75	6.25
Merged-chr6-7967590-2	chr6	7967088	7968088	+	769.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122364.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	14.3	11.52	27.75	3.37	8.4	3.22	6.34	9.73	9.99
Merged-chr19-33227201-2	chr19	33226694	33227694	+	769.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	70082.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	3.43	2.3	3.7	2.7	4.2	1.61	1.06	1.77	7.49
Merged-chr3-31138655-2	chr3	31138166	31139166	+	769.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11254.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	8.58	11.98	9.25	10.12	9.8	9.65	13.73	15.48	8.12
Merged-chr19-16222695-2	chr19	16222153	16223153	+	769.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	58555.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	9.15	10.14	11.1	10.8	6.06	8.84	7.39	3.54	7.49
Merged-chr6-114404337-3	chr6	114403822	114404822	+	769.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252642, intron 1 of 1)	intron (NM_001252642, intron 1 of 1)	656.0	NM_001252643	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	5.72	11.06	7.4	9.45	9.8	3.22	7.39	1.33	2.5
Merged-chr13-58214883-3	chr13	58214392	58215392	+	769.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	761.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	104.11	110.13	63.82	100.53	92.37	68.32	139.42	91.09	67.45
Merged-chr2-158189642-2	chr2	158189157	158190157	+	769.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001131021, intron 14 of 15)	ORR1D2|LTR|ERVL-MaLR	-2351.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	4.58	0.92	0.0	7.42	1.4	3.22	2.11	1.33	3.12
Merged-chr2-34770277-3	chr2	34769773	34770773	+	769.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1817.0	NM_001163434	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	34.32	37.78	25.9	33.74	27.52	39.39	31.69	26.53	19.98
Merged-chr15-80899462-2	chr15	80898947	80899947	+	769.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177124, intron 11 of 21)	intron (NM_177124, intron 11 of 21)	-40592.0	NR_039573	100628612.0		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	22.88	10.14	20.35	7.42	5.6	10.45	25.35	20.34	16.86
Merged-chr8-25187646-2	chr8	25187155	25188155	+	769.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	13887.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	9.15	8.29	9.25	9.45	10.26	10.45	11.62	11.94	6.87
Merged-chr9-41228887-3	chr9	41228411	41229411	+	769.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22756.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	2.29	5.53	1.85	6.75	4.67	3.22	4.22	3.54	2.5
Merged-chr8-22860259-2	chr8	22859771	22860771	+	769.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 1 of 17)	CpG	732.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	60.64	61.75	52.72	53.3	51.32	43.4	50.7	50.85	39.35
Merged-chr11-20847720-3	chr11	20847235	20848235	+	769.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16627.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	10.3	8.29	16.65	10.12	6.53	6.43	6.34	8.4	1.25
Merged-chr18-36514152-4	chr18	36513691	36514691	+	769.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 2 of 5)	intron (NM_010415, intron 2 of 5)	1614.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	58.92	67.27	24.97	43.18	33.12	29.74	79.21	75.17	43.09
Merged-chr4-128621552-3	chr4	128621061	128622061	+	769.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2942.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	76.08	72.8	69.37	66.8	23.79	41.8	77.1	63.23	36.85
Merged-chr2-71047480-1	chr2	71046980	71047980	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	8126.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	17.73	12.9	16.65	15.52	18.66	16.08	10.56	15.48	22.48
Merged-chr10-115170687-1	chr10	115170187	115171187	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173391, intron 5 of 10)	intron (NM_173391, intron 5 of 10)	14335.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	1.72	0.46	0.92	0.67	0.47	9.65	1.06	1.33	4.37
Merged-chr15-78355711-2	chr15	78355204	78356204	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7105.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	6.86	5.07	1.85	4.72	2.8	4.82	5.28	6.19	1.87
Merged-chr9-15060862-1	chr9	15060362	15061362	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164797, exon 16 of 20)	exon (NM_001164797, exon 16 of 20)	-15384.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	1.14	2.76	1.85	1.35	3.27	1.61	3.17	0.44	3.12
Merged-chr1-155018662-1	chr1	155018162	155019162	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	64602.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	2.86	3.23	9.25	6.75	4.2	4.02	4.22	3.1	1.25
Merged-chr17-10724242-1	chr17	10723742	10724742	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	115949.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.58	9.68	5.55	13.49	13.53	13.66	8.45	8.4	3.75
Merged-chr16-43841486-1	chr16	43840986	43841986	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48190.0	NM_029128	106248.0	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrt2	3110012M05Rik|4930470H18Rik|AI648807|Qrtr2|Qtrtd1	queuine tRNA-ribosyltransferase accessory subunit 2	protein-coding	5.15	4.61	1.85	5.4	7.46	9.65	3.17	2.21	9.37
Merged-chr15-25624476-3	chr15	25623972	25624972	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	1922.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	36.61	40.09	9.25	14.84	8.4	4.82	12.67	7.96	7.49
Merged-chr16-91694896-3	chr16	91694392	91695392	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 8 of 11)	intron (NM_026994, intron 8 of 11)	5994.0	NR_040389	100038392.0	Mm.440384	NR_040389	ENSMUSG00000085169	Gm10785	-	predicted gene 10785	ncRNA	11.44	8.29	2.77	15.52	6.06	19.29	10.56	6.19	1.87
Merged-chr7-80250024-1	chr7	80249524	80250524	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177765, intron 3 of 14)	intron (NM_177765, intron 3 of 14)	3648.0	NM_177765	269954.0	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	9.72	6.91	7.4	2.7	5.6	8.04	1.06	0.44	4.37
Merged-chr2-130295745-2	chr2	130295232	130296232	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110513)	promoter-TSS (NM_001110513)	-207.0	NM_001110513	228598.0	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	3.43	2.76	8.32	11.47	4.2	3.22	4.22	2.65	2.5
Merged-chr6-89430962-1	chr6	89430462	89431462	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	ORR1F|LTR|ERVL-MaLR	-68349.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	6.86	4.15	14.8	10.12	8.4	2.41	8.45	3.98	9.99
Merged-chr19-24984562-1	chr19	24984062	24985062	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14967.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	18.88	14.28	3.7	26.31	12.13	27.33	16.9	19.9	11.24
Merged-chr9-65787582-1	chr9	65787082	65788082	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	39982.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	9.15	9.68	6.47	9.45	8.4	15.27	4.22	5.31	6.25
Merged-chr7-142384457-3	chr7	142383982	142384982	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009983, intron 2 of 8)	intron (NM_009983, intron 2 of 8)	3388.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	38.9	38.25	33.3	18.22	14.46	10.45	64.43	51.73	30.6
Merged-chrX-167104465-2	chrX	167103968	167104968	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34098.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	13.16	5.99	5.55	15.52	4.2	6.43	9.51	3.98	6.25
Merged-chr1-164080109-1	chr1	164079609	164080609	+	769.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011346, exon 9 of 9)	3' UTR (NM_011346, exon 9 of 9)	18033.0	NM_011346	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	10.87	12.9	7.4	7.42	5.13	6.43	29.57	18.57	15.61
Merged-chr9-56258056-1	chr9	56257556	56258556	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-96986.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	93.24	95.84	67.52	107.28	108.23	59.48	185.89	220.64	80.56
Merged-chr10-8934085-3	chr10	8933578	8934578	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48008.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.44	4.15	1.85	6.07	4.2	1.61	9.51	8.4	4.37
Merged-chr5-143594423-1	chr5	143593923	143594923	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28024.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	2.29	1.84	5.55	0.67	9.33	4.02	5.28	7.07	2.5
Merged-chr2-5421852-1	chr2	5421352	5422352	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	MTD|LTR|ERVL-MaLR	42462.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	5.72	0.92	1.85	6.75	2.33	8.04	1.06	0.44	9.37
Merged-chr8-25102546-3	chr8	25102022	25103022	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031257)	promoter-TSS (NM_031257)	343.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	146.45	147.45	119.32	133.59	114.76	132.63	178.5	163.16	89.31
Merged-chr14-54239224-2	chr14	54238728	54239728	+	769.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010015)	TTS (NM_010015)	14701.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	3.43	1.38	1.85	2.7	1.87	1.61	2.11	0.88	1.25
Merged-chr6-140722918-1	chr6	140722418	140723418	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96033.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	1.14	3.69	4.62	5.4	1.4	1.61	7.39	0.44	4.37
Merged-chr17-44734674-1	chr17	44734174	44735174	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073392, intron 2 of 7)	CpG	1502.0	NR_073425	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	1.72	2.3	5.55	2.02	1.87	0.0	4.22	0.0	1.25
Merged-chr12-104223848-1	chr12	104223348	104224348	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	9215.0	NM_001033335	238393.0	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	21.74	21.2	26.82	10.8	11.66	8.04	19.01	14.15	8.12
Merged-chr10-93521550-1	chr10	93521050	93522050	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	18483.0	NM_027908	71761.0	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	2.86	4.61	7.4	8.1	2.8	1.61	3.17	0.88	2.5
Merged-chr3-99981221-1	chr3	99980721	99981721	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028892, intron 4 of 48)	GSAT_MM|Satellite|Satellite	95804.0	NM_028892	74362.0	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	1.14	3.69	0.0	0.67	5.13	1.61	1.06	2.65	1.87
Merged-chr6-128630244-1	chr6	128629744	128630744	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7310.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	13.73	13.36	9.25	10.12	14.46	10.45	12.67	11.94	7.49
Merged-chr7-145188019-1	chr7	145187519	145188519	+	769.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 20 of 22)	intron (NR_132643, intron 20 of 22)	20100.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.58	3.23	3.7	6.07	4.2	4.02	3.17	2.21	6.25
Merged-chr1-7114077-3	chr1	7113576	7114576	+	768.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	MLTR14|LTR|ERV1	25156.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.01	10.14	12.95	6.75	4.2	5.63	9.51	7.52	3.75
Merged-chr5-114702771-3	chr5	114702274	114703274	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5005.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	8.58	2.3	16.65	8.77	1.87	4.82	5.28	4.86	1.25
Merged-chr6-125684807-3	chr6	125684315	125685315	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 50 of 51)	intron (NM_011708, intron 50 of 51)	-5604.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	33.75	29.95	23.12	27.66	14.93	37.78	16.9	25.65	16.86
Merged-chr16-91840284-3	chr16	91839785	91840785	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 18 of 28)	intron (NM_001110275, intron 18 of 28)	91345.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	244.84	226.71	187.77	304.97	200.6	212.2	286.23	358.16	138.65
Merged-chr16-20227731-3	chr16	20227228	20228228	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001145930, exon 28 of 31)	exon (NM_001145930, exon 28 of 31)	13630.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	2.29	2.3	3.7	7.42	5.13	4.82	4.22	3.1	2.5
Merged-chr2-128312238-3	chr2	128311781	128312781	+	768.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028589, intron 2 of 2)	intron (NR_028589, intron 2 of 2)	117070.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	28.03	20.74	39.77	31.04	23.79	24.92	35.91	46.87	28.73
Merged-chr3-103805384-2	chr3	103804886	103805886	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040412, intron 4 of 4)	intron (NR_040412, intron 4 of 4)	2257.0	NR_040412	100503157.0	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	-	predicted gene 15471	ncRNA	25.17	56.22	24.97	30.36	37.79	51.44	29.57	37.14	26.85
Merged-chrX-93886149-2	chrX	93885677	93886677	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-54082.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	1.14	0.46	0.0	0.0	0.93	1.61	4.22	0.44	0.0
Merged-chr5-92127466-2	chr5	92126967	92127967	+	768.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	10258.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	14.3	7.37	10.17	29.01	21.93	28.94	15.84	11.94	13.12
Merged-chr19-21271408-3	chr19	21270918	21271918	+	768.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009551)	promoter-TSS (NM_009551)	-860.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	172.76	187.54	141.52	186.9	173.07	146.29	190.11	184.83	129.28
Merged-chr1-64052196-3	chr1	64051697	64052697	+	768.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 2 of 3)	intron (NM_033563, intron 2 of 3)	-9696.0	NR_105864	102466760.0		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	32.61	41.01	14.8	49.93	32.66	22.51	29.57	14.15	28.1
Merged-chr12-81845258-3	chr12	81844766	81845766	+	768.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14764.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	13.73	3.23	5.55	4.72	3.73	3.22	8.45	4.86	1.87
Merged-chr11-94689169-2	chr11	94688660	94689660	+	768.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-11667.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	28.03	31.79	18.5	36.43	18.19	32.96	30.63	26.09	19.98
Merged-chr3-115643090-4	chr3	115642581	115643581	+	768.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	71974.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	9.72	15.67	11.1	46.56	34.99	33.76	16.9	15.48	8.12
Merged-chr2-27769307-2	chr2	27768762	27769762	+	768.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58679.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	18.88	8.75	9.25	11.47	6.53	7.23	6.34	7.52	2.5
Merged-chr4-114917218-2	chr4	114916708	114917708	+	768.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030721, intron 3 of 3)	intron (NR_030721, intron 3 of 3)	7919.0	NR_030721	100040736.0	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	3.43	2.76	0.0	5.4	0.93	1.61	2.11	0.44	7.49
Merged-chr10-94358350-2	chr10	94357871	94358871	+	768.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	46422.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	122.42	135.93	71.22	171.38	112.9	103.69	224.97	170.68	93.05
Merged-chr13-45966712-3	chr13	45966218	45967218	+	768.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1727.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	37.18	35.48	24.97	39.81	24.26	24.92	53.87	31.84	15.61
Merged-chr7-142395156-3	chr7	142394650	142395650	+	768.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-7280.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	112.12	111.97	94.35	86.36	71.38	81.18	90.83	100.37	68.7
Merged-chr12-44171626-1	chr12	44171126	44172126	+	768.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38442.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	6.29	1.38	0.0	2.02	1.87	2.41	3.17	7.96	5.0
Merged-chr2-34775922-4	chr2	34775378	34776378	+	768.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022310, exon 8 of 8)	exon (NM_022310, exon 8 of 8)	3788.0	NM_022310	14828.0	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	50.91	35.02	13.87	36.43	14.46	9.65	27.46	20.78	9.37
Merged-chr7-66323455-3	chr7	66322956	66323956	+	768.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	58268.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	35.47	42.39	39.77	23.62	33.59	24.11	13.73	13.27	23.73
Merged-chr15-73000030-3	chr15	72999532	73000532	+	768.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_180662, exon 8 of 22)	exon (NM_180662, exon 8 of 22)	55780.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.29	3.69	0.0	4.72	2.8	3.22	4.22	0.44	8.74
Merged-chr17-4969855-1	chr17	4969355	4970355	+	768.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25219.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	1.72	4.15	1.85	3.37	5.6	0.0	7.39	3.54	1.87
Merged-chr7-101546849-2	chr7	101546348	101547348	+	768.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8954.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	47.48	49.3	27.75	72.87	62.05	47.42	42.25	34.05	37.47
Merged-chr8-94909111-3	chr8	94908580	94909580	+	768.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033533, intron 4 of 8)	intron (NM_001033533, intron 4 of 8)	9018.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	5.72	3.23	0.92	2.02	0.93	4.82	2.11	0.0	3.12
Merged-chr15-81393144-3	chr15	81392624	81393624	+	768.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6570.0	NM_133726	70356.0	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	25.17	20.27	29.6	30.36	13.06	24.11	30.63	30.95	6.87
Merged-chr6-7733284-3	chr6	7732780	7733780	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-40098.0	NM_012055	27053.0	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	5.15	5.99	5.55	6.75	2.8	0.0	2.11	4.86	1.25
Merged-chr5-53405195-1	chr5	53404695	53405695	+	768.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	138089.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	2.29	5.07	1.85	2.02	4.2	3.22	2.11	3.1	1.25
Merged-chr18-62232808-3	chr18	62232302	62233302	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52702.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	21.17	23.04	11.1	15.52	14.0	12.86	23.24	17.69	16.24
Merged-chr5-137746547-3	chr5	137746093	137747093	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 1 of 4)	intron (NM_023910, intron 1 of 4)	624.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	63.5	67.74	98.05	76.92	74.17	110.92	120.41	107.0	76.82
Merged-chr3-145963751-1	chr3	145963251	145964251	+	768.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24119.0	NM_001166064	214804.0	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	5.72	6.45	8.32	16.87	8.4	4.82	3.17	3.54	1.25
Merged-chr5-66149043-3	chr5	66148551	66149551	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	1927.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	42.33	40.55	22.2	43.86	36.85	35.37	55.98	54.83	33.72
Merged-chr5-138442470-3	chr5	138441961	138442961	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028130, intron 1 of 4)	intron (NM_028130, intron 1 of 4)	985.0	NM_028130	72154.0	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|Roma|mszf12|mszf23-1	zinc finger protein 157	protein-coding	10.3	14.75	25.9	21.59	17.73	21.7	21.12	17.24	10.62
Merged-chr11-69689847-3	chr11	69689358	69690358	+	768.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-4304.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	42.9	23.5	39.77	57.35	22.39	67.52	39.08	25.2	28.1
Merged-chr2-167798136-2	chr2	167797627	167798627	+	768.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	106950.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	26.31	14.75	23.12	26.31	8.4	40.19	14.79	11.94	24.36
Merged-chr6-129398418-2	chr6	129397925	129398925	+	768.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	1128.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	260.28	360.79	179.44	296.88	255.65	157.54	385.51	503.63	192.35
Merged-chr18-76160990-3	chr18	76160509	76161509	+	768.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9543.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	1.72	3.69	0.0	2.7	0.47	3.22	7.39	1.33	2.5
Merged-chr1-136132040-3	chr1	136131526	136132526	+	768.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046167)	promoter-TSS (NR_046167)	636.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	110.98	105.98	129.49	105.93	130.16	136.64	178.5	184.83	90.56
Merged-chr1-74125394-3	chr1	74124897	74125897	+	768.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-144.0	NM_001170641	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	4.58	2.3	3.7	2.02	4.67	0.0	1.06	0.44	0.0
Merged-chr4-13099055-1	chr4	13098555	13099555	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	192218.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	6.86	3.69	0.0	2.02	1.87	0.0	2.11	3.54	2.5
Merged-chr1-165717255-1	chr1	165716755	165717755	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	-9161.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	73.79	55.29	55.5	74.22	58.78	80.38	52.81	32.72	35.6
Merged-chr14-52014033-2	chr14	52013547	52014547	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027248, intron 1 of 4)	intron (NM_027248, intron 1 of 4)	511.0	NM_001253695	69890.0	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik|Znf219	zinc finger protein 219	protein-coding	41.19	14.28	38.85	24.29	16.79	22.51	28.52	17.69	17.49
Merged-chr18-12760950-2	chr18	12760454	12761454	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 10 of 13)	intron (NM_001252490, intron 10 of 13)	19599.0	NM_027687	71132.0	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	20.02	28.57	24.97	17.54	24.26	36.97	26.4	16.36	28.73
Merged-chr1-135523263-3	chr1	135522752	135523752	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	ORR1E|LTR|ERVL-MaLR	62103.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	5.15	10.14	9.25	6.75	2.33	6.43	22.18	12.38	13.74
Merged-chr5-99216149-4	chr5	99215711	99216711	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36716.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	38.9	58.52	40.7	39.81	37.79	24.92	39.08	42.01	40.59
Merged-chr7-101214007-1	chr7	101213507	101214507	+	768.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199012, intron 8 of 20)	intron (NM_199012, intron 8 of 20)	88081.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	6.86	6.91	4.62	8.1	10.26	3.22	31.69	28.74	8.12
Merged-chr3-107357035-1	chr3	107356535	107357535	+	768.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23746.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	10.3	3.69	1.85	2.02	4.67	2.41	3.17	1.77	0.0
Merged-chr10-19551796-3	chr10	19551289	19552289	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40160.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	16.02	29.49	12.95	20.24	21.93	30.54	35.91	15.48	19.36
Merged-chr14-70958996-3	chr14	70958502	70959502	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	L1_Rod|LINE|L1	68895.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	37.76	40.55	35.15	38.46	25.19	41.8	48.58	38.91	28.73
Merged-chr9-56076071-3	chr9	56075574	56076574	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13902.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	26.89	17.97	7.4	31.04	22.39	17.68	30.63	20.78	18.74
Merged-chr12-76373312-2	chr12	76372837	76373837	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	3071.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	9.72	11.52	7.4	4.05	8.4	9.65	10.56	20.34	11.24
Merged-chr15-99365137-1	chr15	99364637	99365637	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310622, intron 1 of 25)	intron (NM_001310622, intron 1 of 25)	5345.0	NM_001310623	22379.0	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	6.29	3.23	5.55	9.45	7.46	16.88	7.39	9.73	8.74
Merged-chr1-72019068-1	chr1	72018568	72019568	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13873.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	2.86	3.69	5.55	5.4	5.6	3.22	6.34	4.42	3.75
Merged-chr2-38956100-1	chr2	38955600	38956600	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 6 of 7)	intron (NM_172854, intron 6 of 7)	24120.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	2.29	2.3	5.55	13.49	4.2	4.82	9.51	4.42	6.25
Merged-chr18-5131864-1	chr18	5131364	5132364	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	33867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	6.29	5.53	9.25	8.1	8.86	6.43	11.62	7.52	11.87
Merged-chr11-49846103-2	chr11	49845605	49846605	+	768.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163672)	promoter-TSS (NM_001163672)	-646.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	94.96	115.2	107.29	80.29	86.77	90.02	190.11	262.65	116.79
Merged-chr14-31669338-3	chr14	31668830	31669830	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28273.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	15.45	10.14	12.95	26.99	15.86	32.15	13.73	9.73	6.25
Merged-chr1-171378109-2	chr1	171377602	171378602	+	768.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122680, intron 1 of 7)	L2c|LINE|L2	7929.0	NM_001122680	71740.0	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	14.3	8.75	18.5	7.42	6.06	7.23	4.22	2.65	8.74
Merged-chr10-20311584-3	chr10	20311078	20312078	+	768.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153787)	promoter-TSS (NM_153787)	-891.0	NM_001025392	72567.0	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	260.28	374.62	207.19	214.56	318.16	221.04	237.64	361.69	171.12
Merged-chr16-31898496-1	chr16	31897996	31898996	+	768.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013900, exon 16 of 16)	3' UTR (NM_013900, exon 16 of 16)	19686.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	3.43	8.29	9.25	10.12	9.33	8.84	12.67	2.21	3.75
Merged-chr1-87824617-3	chr1	87824120	87825120	+	768.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009118, intron 9 of 15)	intron (NM_009118, intron 9 of 15)	20940.0	NM_009118	20215.0	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	7.44	2.3	3.7	7.42	4.2	9.65	4.22	3.98	4.37
Merged-chr18-49982029-3	chr18	49981521	49982521	+	768.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	RLTR12E|LTR|ERVK	2594.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	45.76	28.11	26.82	16.87	18.19	15.27	14.79	20.78	7.49
Merged-chr1-171451196-2	chr1	171450682	171451682	+	768.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172647, intron 1 of 9)	intron (NM_172647, intron 1 of 9)	13621.0	NM_172647	16456.0	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	8.58	7.83	12.95	7.42	4.67	8.04	14.79	20.78	19.98
Merged-chr2-164940614-2	chr2	164940118	164941118	+	768.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7601.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	47.48	15.67	18.5	20.92	7.46	8.04	43.3	13.71	6.25
Merged-chr9-27000175-3	chr9	26999643	27000643	+	768.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025862)	promoter-TSS (NM_025862)	466.0	NM_001326361	77862.0	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	21.74	47.92	58.27	37.11	46.65	59.48	40.14	44.66	33.72
Merged-chr17-37026631-2	chr17	37026143	37027143	+	768.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-3245.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	6.29	6.45	1.85	2.02	2.8	1.61	4.22	1.33	0.0
Merged-chr7-118104865-2	chr7	118104378	118105378	+	768.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_170669, exon 5 of 5)	3' UTR (NM_170669, exon 5 of 5)	11269.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	12.01	11.06	14.8	14.84	13.06	19.29	11.62	10.61	10.62
Merged-chr2-24409405-3	chr2	24408881	24409881	+	768.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177611)	TTS (NM_177611)	22765.0	NM_001355232	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	1.72	3.23	3.7	2.02	2.8	1.61	4.22	2.21	2.5
Merged-chr13-92963815-1	chr13	92963315	92964315	+	768.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109489.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	18.88	13.36	11.1	3.37	3.27	3.22	25.35	27.41	9.99
Merged-chr3-95459329-2	chr3	95458825	95459825	+	768.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037737, intron 3 of 21)	intron (NM_001037737, intron 3 of 21)	24935.0	NM_001037737	11863.0	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	21.17	26.26	29.6	33.74	24.72	53.85	23.24	30.95	31.85
Merged-chr1-39735786-3	chr1	39735279	39736279	+	768.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14790.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	26.31	23.04	17.57	29.01	25.66	36.17	12.67	15.48	18.11
Merged-chr7-83639245-1	chr7	83638745	83639745	+	768.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023377, intron 5 of 5)	intron (NM_023377, intron 5 of 5)	7228.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	12.59	9.68	11.1	6.75	7.93	17.68	12.67	4.42	11.24
Merged-chr8-108918559-3	chr8	108918062	108919062	+	768.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 5 of 9)	intron (NM_007496, intron 5 of 9)	-18298.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	29.75	28.57	14.8	35.09	25.19	20.9	15.84	20.78	6.25
Merged-chr14-70181296-3	chr14	70180816	70181816	+	768.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271407, intron 20 of 20)	intron (NM_001271407, intron 20 of 20)	-3644.0	NM_145978	213019.0	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	6.29	1.38	7.4	5.4	3.27	4.02	1.06	7.07	5.0
Merged-chr5-123684575-5	chr5	123684118	123685118	+	768.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291229)	promoter-TSS (NM_001291229)	-257.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	159.03	151.6	159.09	167.33	186.6	153.52	146.81	115.41	69.95
Merged-chr9-106299457-3	chr9	106298940	106299940	+	768.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	PB1D10|SINE|Alu	18379.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	14.87	19.35	22.2	14.17	14.93	23.31	28.52	28.74	31.85
Merged-chr2-120559003-2	chr2	120558505	120559505	+	768.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	ORR1C2|LTR|ERVL-MaLR	4854.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	8.01	11.06	5.55	7.42	3.27	4.02	8.45	10.61	8.74
Merged-chr10-87853543-2	chr10	87853041	87854041	+	768.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4724.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	19.45	16.13	17.57	20.92	14.46	12.86	23.24	30.95	14.36
Merged-chr7-47035608-2	chr7	47035104	47036104	+	768.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15036.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	95.53	105.06	99.89	108.63	118.96	81.99	125.69	149.01	73.69
Merged-chr4-151073529-3	chr4	151073045	151074045	+	768.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 22 of 23)	intron (NM_001081557, intron 22 of 23)	-15592.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	1.14	2.3	6.47	2.02	2.33	1.61	2.11	2.21	3.75
Merged-chr14-45307858-3	chr14	45307428	45308428	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015774, intron 1 of 15)	intron (NM_015774, intron 1 of 15)	10644.0	NM_015774	50527.0	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	20.02	23.04	14.8	14.84	20.06	26.53	21.12	16.8	16.24
Merged-chr8-117673692-3	chr8	117673194	117674194	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357272)	promoter-TSS (NM_001357272)	-5.0	NM_001357272	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	11.44	8.75	7.4	17.54	11.66	11.25	17.96	11.5	8.74
Merged-chr1-180974583-3	chr1	180974087	180975087	+	768.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144794, exon 23 of 23)	3' UTR (NM_144794, exon 23 of 23)	32069.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	41.19	43.31	34.22	45.88	37.79	49.03	38.02	45.1	27.48
Merged-chr2-157011157-2	chr2	157010647	157011647	+	768.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164663, exon 15 of 15)	3' UTR (NM_001164663, exon 15 of 15)	-4072.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	9.15	9.68	1.85	4.72	2.8	4.02	4.22	3.54	5.0
Merged-chr13-74026455-3	chr13	74025921	74026921	+	768.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	17002.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	16.02	5.07	12.95	6.75	6.06	12.86	4.22	5.31	1.25
Merged-chr6-114644064-4	chr6	114643547	114644547	+	768.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028835, intron 1 of 18)	ID_B1|SINE|B4	950.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	370.12	459.4	246.96	333.99	394.67	291.78	378.11	456.32	217.34
Merged-chr15-78927316-1	chr15	78926816	78927816	+	768.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008495, intron 1 of 3)	intron (NM_008495, intron 1 of 3)	591.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	33.75	22.12	26.82	51.28	52.72	67.52	9.51	7.52	5.0
Merged-chr11-87578440-3	chr11	87577947	87578947	+	768.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361936)	promoter-TSS (NM_001361936)	58.0	NM_001284398	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	6.29	5.99	7.4	2.02	3.27	6.43	2.11	1.33	1.25
Merged-chr18-67243139-3	chr18	67242626	67243626	+	768.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172630, intron 2 of 10)	intron (NM_172630, intron 2 of 10)	2704.0	NM_172630	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	30.89	29.95	20.35	16.19	10.73	20.9	47.53	34.93	33.72
Merged-chr18-46365151-3	chr18	46364650	46365650	+	768.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-53222.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	16.59	10.6	11.1	16.19	6.06	24.11	17.96	25.2	7.49
Merged-chr7-120124993-2	chr7	120124514	120125514	+	768.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20277.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	5.72	0.92	0.0	4.72	1.87	0.8	3.17	0.0	3.75
Merged-chr8-84745771-3	chr8	84745286	84746286	+	768.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	28583.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	8.01	7.37	3.7	9.45	3.27	4.02	24.29	9.73	6.87
Merged-chr14-76052177-3	chr14	76051681	76052681	+	768.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-41316.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	5.15	7.83	3.7	3.37	7.0	4.82	10.56	7.07	2.5
Merged-chr15-38301872-2	chr15	38301414	38302414	+	768.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1203.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	86.38	70.5	78.62	100.53	96.57	135.04	106.67	116.73	76.82
Merged-chr17-65680285-2	chr17	65679779	65680779	+	768.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	intron (NM_133685, intron 5 of 6)	-38075.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	5.15	8.75	3.7	7.42	10.26	11.25	4.22	7.52	4.37
Merged-chr7-141216388-2	chr7	141215891	141216891	+	768.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025886, intron 1 of 5)	intron (NM_025886, intron 1 of 5)	531.0	NM_025886	66985.0	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	14.87	1.84	6.47	16.19	3.73	6.43	5.28	1.77	3.75
Merged-chr4-72380842-3	chr4	72380328	72381328	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179584.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	65.79	80.64	59.2	79.62	64.38	77.16	63.37	74.73	47.46
Merged-chr8-34255194-3	chr8	34254703	34255703	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88491.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	13.16	13.36	5.55	14.17	5.13	17.68	7.39	6.63	13.74
Merged-chr15-97169518-3	chr15	97169015	97170015	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NR_155279	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	18.88	8.29	5.55	34.41	31.26	24.92	13.73	12.38	5.62
Merged-chr16-55687722-3	chr16	55687245	55688245	+	768.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134393.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	13.16	8.75	4.62	8.77	8.4	9.65	14.79	9.73	3.75
Merged-chr3-36319729-1	chr3	36319229	36320229	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-97454.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	6.29	9.68	3.7	3.37	10.26	4.82	7.39	9.29	6.25
Merged-chr13-41619734-1	chr13	41619234	41620234	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	13518.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	11.44	12.9	16.65	16.19	10.73	15.27	25.35	22.11	31.85
Merged-chr17-29246773-1	chr17	29246273	29247273	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8983.0	NM_001360239	240058.0	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	11.44	9.68	7.4	7.42	5.13	6.43	2.11	5.31	5.0
Merged-chr7-56013384-1	chr7	56012884	56013884	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153578, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	6189.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	12.01	13.82	11.1	14.17	11.2	20.9	1.06	0.0	3.75
Merged-chr17-34862281-3	chr17	34861792	34862792	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013484)	TTS (NM_013484)	222.0	NM_001142706	14962.0	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	24.6	8.75	18.5	11.47	8.4	11.25	52.81	25.65	14.99
Merged-chr6-146643090-1	chr6	146642590	146643590	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025315, intron 1 of 3)	intron (NM_025315, intron 1 of 3)	511.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	152.74	120.73	101.74	118.08	129.22	90.02	147.87	134.42	84.31
Merged-chr5-137826585-3	chr5	137826083	137827083	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153510, intron 4 of 6)	intron (NM_153510, intron 4 of 6)	9695.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	25.74	23.5	25.9	18.89	14.46	35.37	47.53	21.67	23.11
Merged-chr5-43948971-1	chr5	43948471	43949471	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32828.0	NM_008009	14181.0	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	2.29	2.76	0.0	4.72	1.4	6.43	2.11	2.65	5.62
Merged-chr9-44882176-2	chr9	44881714	44882714	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-940.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	17.73	15.21	17.57	6.07	15.86	29.74	16.9	15.92	9.37
Merged-chr16-95781883-1	chr16	95781383	95782383	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79476.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.57	4.15	3.7	4.05	3.27	1.61	2.11	6.19	6.25
Merged-chr7-16167627-2	chr7	16167136	16168136	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44A|LTR|ERVK	-7759.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.72	1.84	1.85	4.72	6.06	8.04	10.56	12.38	2.5
Merged-chr11-62744278-1	chr11	62743778	62744778	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15185.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	3.43	1.38	0.0	2.7	1.87	4.02	1.06	9.29	10.62
Merged-chr5-110841234-1	chr5	110840734	110841734	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016681, exon 2 of 15)	exon (NM_016681, exon 2 of 15)	1217.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	11.44	10.14	12.02	12.82	16.79	8.04	5.28	5.75	5.62
Merged-chr16-89960541-1	chr16	89960041	89961041	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	286.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.57	2.3	5.55	0.67	4.2	4.82	4.22	1.77	3.75
Merged-chr4-136602279-3	chr4	136601782	136602782	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347221, exon 1 of 20)	exon (NM_001347221, exon 1 of 20)	441.0	NM_001356567	99982.0	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	113.27	64.97	101.74	143.04	76.97	92.44	136.25	54.39	58.71
Merged-chr17-67114927-1	chr17	67114427	67115427	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-88692.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	7.44	10.6	8.32	14.84	19.59	12.06	4.22	2.21	8.74
Merged-chr6-34905570-1	chr6	34905070	34906070	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013366, exon 5 of 15)	exon (NM_001013366, exon 5 of 15)	5261.0	NM_001013366	101240.0	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	11.44	7.37	8.32	15.52	8.4	13.66	6.34	3.54	6.25
Merged-chr2-128968298-1	chr2	128967798	128968798	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178404, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	896.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	120.13	93.08	127.64	123.47	90.5	81.18	145.75	58.37	74.94
Merged-chr9-111054059-1	chr9	111053559	111054559	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001302376)	TTS (NM_001302376)	3185.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	12.59	3.69	5.55	12.14	2.33	6.43	4.22	1.33	7.49
Merged-chr10-62197617-2	chr10	62197103	62198103	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 3 of 7)	intron (NM_197996, intron 3 of 7)	-3376.0	NR_106122	102465767.0		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	28.03	17.51	18.5	10.8	23.79	32.15	16.9	15.03	11.24
Merged-chr3-97666358-1	chr3	97665858	97666858	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182997, intron 5 of 7)	intron (NM_182997, intron 5 of 7)	8146.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	11.44	8.75	8.32	14.17	11.66	23.31	15.84	8.4	14.36
Merged-chr5-143975535-3	chr5	143975060	143976060	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	39293.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	2.86	5.99	1.85	2.02	0.93	5.63	3.17	0.0	1.25
Merged-chr16-96126839-1	chr16	96126339	96127339	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008251, intron 4 of 5)	B3A|SINE|B2	886.0	NM_008251	15312.0	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	23.45	18.89	6.47	32.39	17.73	11.25	19.01	10.61	10.62
Merged-chr17-42832439-1	chr17	42831939	42832939	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009847, intron 5 of 17)	intron (NM_009847, intron 5 of 17)	43985.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	13.16	14.75	12.95	6.07	6.53	9.65	11.62	7.96	13.12
Merged-chr5-62853459-3	chr5	62852982	62853982	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	intron (NM_001170705, intron 7 of 8)	39659.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	54.35	65.89	37.0	80.29	81.64	55.46	25.35	22.11	34.97
Merged-chr5-105699340-3	chr5	105698872	105699872	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122768)	promoter-TSS (NM_001122768)	-597.0	NM_001122768	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	153.31	142.38	75.85	183.52	164.21	135.04	175.33	162.28	86.81
Merged-chr7-16841699-2	chr7	16841199	16842199	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133789)	TTS (NM_133789)	-1203.0	NM_001252458	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	14.3	17.51	19.42	10.8	12.13	22.51	13.73	10.17	16.86
Merged-chr1-39944467-2	chr1	39943909	39944909	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	43496.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	12.01	10.14	4.62	12.82	11.2	11.25	10.56	3.54	8.12
Merged-chr7-3800117-1	chr7	3799617	3800617	+	768.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 12 of 12)	intron (NM_001289428, intron 12 of 12)	44934.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	4.22	4.86	7.49
Merged-chr17-21708651-2	chr17	21708149	21709149	+	768.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001008501, exon 2 of 6)	5' UTR (NM_001008501, exon 2 of 6)	908.0	NM_001008501	240034.0	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	21.74	40.55	48.1	29.01	30.32	34.56	23.24	38.47	26.85
Merged-chr17-84318642-1	chr17	84318142	84319142	+	768.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	-130695.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	20.59	23.04	20.35	14.84	13.53	14.47	24.29	21.22	19.36
Merged-chr2-3657029-3	chr2	3656527	3657527	+	767.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-56431.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	42.9	51.61	24.97	46.56	30.32	40.19	51.75	55.27	46.22
Merged-chr10-19187299-3	chr10	19186803	19187803	+	767.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	20065.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	10.3	7.37	5.55	13.49	9.8	0.8	11.62	3.54	8.12
Merged-chr5-90785983-3	chr5	90785440	90786440	+	767.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_203320)	promoter-TSS (NM_203320)	-161.0	NM_203320	330122.0	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	4.0	2.3	1.85	5.4	4.2	3.22	3.17	3.98	2.5
Merged-chr4-132331047-2	chr4	132330547	132331547	+	767.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001197082)	TTS (NM_001197082)	-1509.0	NM_027925	71787.0	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	36.04	29.95	55.5	18.89	7.93	12.06	68.65	45.99	33.72
Merged-chr13-44734543-3	chr13	44734045	44735045	+	767.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205043, intron 1 of 17)	intron (NM_001205043, intron 1 of 17)	3274.0	NM_001205043	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	69.79	55.29	61.97	60.05	41.05	47.42	30.63	34.49	19.36
Merged-chr11-100629689-3	chr11	100629212	100630212	+	767.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177790, intron 6 of 7)	intron (NM_177790, intron 6 of 7)	6757.0	NM_028024	71966.0	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	23.45	14.75	20.35	6.75	5.13	4.02	15.84	15.92	9.99
Merged-chr8-46908371-2	chr8	46907865	46908865	+	767.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78522.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	16.59	24.42	12.95	22.27	12.6	31.35	25.35	26.09	19.36
Merged-chr6-83643857-3	chr6	83643379	83644379	+	767.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016751)	TTS (NM_016751)	12237.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	24.03	34.1	37.92	26.31	24.26	47.42	31.69	17.24	21.23
Merged-chr11-101974357-2	chr11	101973871	101974871	+	767.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-7356.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	17.16	31.79	25.9	19.57	21.93	49.83	41.19	32.28	27.48
Merged-chr15-82118902-3	chr15	82118411	82119411	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028897, intron 26 of 30)	RLTR22_Mur|LTR|ERVK	-9011.0	NM_172428	76457.0	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	8.01	5.99	11.1	6.07	1.87	1.61	5.28	8.4	6.25
Merged-chr9-110711588-3	chr9	110711082	110712082	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028312)	TTS (NM_028312)	31028.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	20.59	30.41	20.35	43.86	21.46	24.92	52.81	62.35	27.48
Merged-chr1-88246955-3	chr1	88246451	88247451	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 24 of 41)	intron (NM_001281466, intron 24 of 41)	19931.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.0	7.83	7.4	8.77	10.26	8.04	10.56	5.31	10.62
Merged-chr8-33384363-1	chr8	33383863	33384863	+	767.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122822, intron 1 of 33)	intron (NM_001122822, intron 1 of 33)	1164.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	34.9	48.38	53.65	23.62	33.59	53.85	62.31	43.77	43.09
Merged-chr1-191230690-3	chr1	191230196	191231196	+	767.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6242.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	8.01	6.45	0.92	49.93	31.72	5.63	15.84	6.19	1.25
Merged-chr15-102002962-1	chr15	102002462	102003462	+	767.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031170, intron 1 of 8)	intron (NM_031170, intron 1 of 8)	1380.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	5.72	1.38	3.7	3.37	2.33	4.82	2.11	0.88	8.12
Merged-chr7-4752878-6	chr7	4752397	4753397	+	767.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183406)	promoter-TSS (NM_183406)	5.0	NM_183406	333182.0	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	8.58	1.38	8.32	18.22	6.06	8.84	11.62	2.65	2.5
Merged-chr2-129562572-1	chr2	129562072	129563072	+	767.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25970.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	5.15	5.53	1.85	1.35	2.8	3.22	7.39	7.52	0.62
Merged-chr10-21907208-3	chr10	21906685	21907685	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	25001.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	38.33	42.39	43.47	56.68	37.79	88.42	68.65	64.11	44.34
Merged-chr2-24311420-3	chr2	24310912	24311912	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20216.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	32.04	32.72	33.3	28.34	25.19	33.76	32.74	27.41	39.97
Merged-chr5-121848279-3	chr5	121847782	121848782	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359949)	promoter-TSS (NM_001359949)	-715.0	NM_175474	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	71.51	61.75	62.9	52.63	42.92	90.83	54.92	40.24	51.21
Merged-chr10-101120428-3	chr10	101119905	101120905	+	767.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-378770.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	6.29	5.07	3.7	5.4	5.13	4.82	1.06	1.77	5.0
Merged-chr9-95328688-1	chr9	95328188	95329188	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	78582.0	NM_018763	54371.0	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	5.15	2.76	3.7	6.75	3.73	4.02	2.11	3.1	2.5
Merged-chr18-15063579-2	chr18	15063078	15064078	+	767.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001142731)	promoter-TSS (NM_001142731)	4.0	NM_001142731	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	2.86	0.92	1.85	4.72	2.33	2.41	4.22	0.88	0.0
Merged-chr12-91637650-2	chr12	91637149	91638149	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175367, exon 7 of 7)	3' UTR (NM_175367, exon 7 of 7)	-47162.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	4.0	4.15	9.25	6.75	2.8	4.82	4.22	2.65	2.5
Merged-chr5-74964441-1	chr5	74963941	74964941	+	767.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 4 of 4)	intron (NR_045866, intron 4 of 4)	15247.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	6.29	7.83	3.7	7.42	3.27	10.45	9.51	0.88	3.12
Merged-chr3-95142825-3	chr3	95142327	95143327	+	767.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	-467.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	29.17	28.11	23.12	22.94	27.99	23.31	32.74	33.6	23.73
Merged-chr17-5250080-3	chr17	5249582	5250582	+	767.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	168685.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	14.3	7.37	20.35	23.62	20.99	13.66	19.01	21.22	0.0
Merged-chr11-103313780-1	chr11	103313280	103314280	+	767.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	30922.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	17.73	5.53	11.1	6.75	2.8	3.22	6.34	4.42	4.37
Merged-chr8-84722985-3	chr8	84722524	84723524	+	767.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001297601, intron 6 of 8)	intron (NM_001297601, intron 6 of 8)	21567.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	6.29	8.29	20.35	8.77	4.67	20.9	8.45	4.86	5.0
Merged-chr9-74825279-1	chr9	74824779	74825779	+	767.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23158.0	NR_045284	100503019.0	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	2.29	3.69	1.85	1.35	0.93	4.02	1.06	3.54	1.25
Merged-chr19-4856462-1	chr19	4855962	4856962	+	767.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019861, intron 4 of 13)	RMER10B|LTR|ERVL	1333.0	NM_019861	56464.0	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	16.59	22.12	27.75	22.94	11.66	27.33	19.01	16.8	12.49
Merged-chr13-119838124-2	chr13	119837625	119838625	+	767.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7908.0	NM_001001449	380878.0	Mm.327311	NM_001001449	ENSMUSG00000094237	AF067063	-	cDNA sequence AF067063	protein-coding	1.72	1.38	0.0	3.37	2.8	0.0	4.22	2.21	0.0
Merged-chr18-32693946-3	chr18	32693448	32694448	+	767.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-121435.0	NM_021367	53603.0	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	39.47	57.14	54.57	45.88	43.39	52.25	44.36	68.09	34.35
Merged-chr5-110284714-3	chr5	110284215	110285215	+	767.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008993, intron 1 of 4)	MTE2b|LTR|ERVL-MaLR	1453.0	NM_008993	19301.0	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	12.01	8.29	2.77	10.8	7.93	14.47	9.51	16.8	13.74
Merged-chr11-85524402-2	chr11	85523932	85524932	+	767.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	171268.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	118.42	80.18	62.9	244.92	188.0	148.7	153.15	223.74	66.82
Merged-chr7-132812012-2	chr7	132811500	132812500	+	767.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	1196.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	100.11	127.64	101.74	94.46	89.57	79.58	101.39	117.62	49.34
Merged-chr11-88161804-2	chr11	88161304	88162304	+	767.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-7761.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	16.59	5.99	3.7	9.45	5.6	0.0	9.51	1.33	0.0
Merged-chr6-57536333-2	chr6	57535805	57536805	+	767.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175523)	promoter-TSS (NM_175523)	-879.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	172.76	211.04	142.44	146.41	184.74	136.64	157.37	216.22	111.17
Merged-chr9-99162996-3	chr9	99162501	99163501	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-22790.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	8.58	1.84	1.85	4.72	7.0	4.82	3.17	1.77	2.5
Merged-chr16-44029459-3	chr16	44028961	44029961	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 4 of 16)	intron (NM_001359085, intron 4 of 16)	-1516.0	NM_001172107	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	38.9	48.38	16.65	63.42	29.39	22.51	91.89	106.12	42.47
Merged-chr10-19064955-3	chr10	19064456	19065456	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49546.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	61.78	51.15	27.75	69.5	29.86	30.54	68.65	48.2	32.48
Merged-chr5-123903092-3	chr5	123902604	123903604	+	767.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_026603	68184.0	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	16.59	4.61	5.55	8.77	5.13	4.82	10.56	6.63	14.99
Merged-chr10-20105511-3	chr10	20105014	20106014	+	767.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 18 of 29)	intron (NM_008580, intron 18 of 29)	-43406.0	NM_008635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	37.76	38.71	18.5	49.93	40.12	73.95	25.35	30.95	34.97
Merged-chr11-90390914-3	chr11	90390396	90391396	+	767.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172563)	promoter-TSS (NM_172563)	21.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	5.15	1.38	1.85	1.35	3.27	0.8	8.45	0.44	2.5
Merged-chr14-45599894-1	chr14	45599394	45600394	+	767.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 11 of 12)	intron (NM_176845, intron 11 of 12)	56184.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	2.29	1.38	2.77	6.07	1.87	8.84	11.62	8.4	3.75
Merged-chr6-70812091-2	chr6	70811582	70812582	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19907.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	11.44	4.61	2.77	12.14	4.2	8.84	9.51	9.29	6.25
Merged-chr3-96568801-1	chr3	96568301	96569301	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	22.88	26.73	38.85	22.94	19.59	28.94	29.57	21.22	34.35
Merged-chr11-51262475-1	chr11	51261975	51262975	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007714)	promoter-TSS (NM_007714)	582.0	NM_001358282	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	116.7	159.89	74.92	121.45	178.21	118.16	132.02	147.68	70.57
Merged-chr11-107316099-1	chr11	107315599	107316599	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 4 of 9)	MLT1A|LTR|ERVL-MaLR	-126718.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	46.34	33.64	24.05	37.11	25.66	38.58	27.46	23.43	24.98
Merged-chr12-38854482-2	chr12	38853991	38854991	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 9 of 11)	intron (NM_001347379, intron 9 of 11)	70780.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	11.44	7.83	9.25	10.12	13.06	9.65	7.39	4.86	9.99
Merged-chrX-169921982-2	chrX	169921480	169922480	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	42361.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	2.29	1.38	0.0	2.02	3.27	4.82	4.22	3.98	1.25
Merged-chr5-113622286-1	chr5	113621786	113622786	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	21317.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	12.59	10.14	9.25	22.27	5.13	22.51	21.12	15.03	20.61
Merged-chr9-53247590-1	chr9	53247090	53248090	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029936, intron 1 of 17)	intron (NM_029936, intron 1 of 17)	522.0	NM_029936	77591.0	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	26.31	23.04	24.05	20.24	20.99	25.72	30.63	42.45	17.49
Merged-chr7-97108304-1	chr7	97107804	97108804	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	26553.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	25.17	28.57	46.25	30.36	25.19	34.56	33.8	17.24	24.36
Merged-chr13-81137567-2	chr13	81137073	81138073	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	173499.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	154.45	177.86	97.12	227.38	173.54	123.78	122.52	152.55	96.8
Merged-chrX-13734931-2	chrX	13734440	13735440	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	MTEa-int|LTR|ERVL-MaLR	15087.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	9.15	20.27	7.4	14.84	16.33	9.65	11.62	14.15	14.99
Merged-chr14-26640597-2	chr14	26640113	26641113	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	2479.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	55.49	48.38	21.27	37.11	25.19	24.11	48.58	36.7	31.23
Merged-chr11-115694177-3	chr11	115693708	115694708	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	5326.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	249.99	218.41	127.64	258.42	276.17	144.68	241.87	334.72	133.65
Merged-chr10-13276544-2	chr10	13276056	13277056	+	767.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	intron (NM_001359294, intron 2 of 11)	47733.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	14.3	16.13	5.55	13.49	8.4	14.47	8.45	8.84	11.87
Merged-chr13-105139962-1	chr13	105139462	105140462	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 7 of 7)	intron (NM_001360891, intron 7 of 7)	57840.0	NM_025751	66763.0	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	3.43	5.99	3.7	4.72	1.4	0.0	4.22	3.98	3.75
Merged-chr5-143510631-1	chr5	143510131	143511131	+	767.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	17362.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	24.6	34.56	20.35	37.78	38.72	44.21	30.63	20.34	19.36
Merged-chr14-9467977-3	chr14	9467495	9468495	+	767.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-416100.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	16.59	12.44	16.65	22.94	14.46	20.09	14.79	9.73	8.74
Merged-chr4-128664199-3	chr4	128663702	128664702	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	9500.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	29.17	35.48	28.67	26.99	15.86	28.13	24.29	13.71	19.98
Merged-chr19-8683240-3	chr19	8682765	8683765	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001112697, exon 3 of 3)	3' UTR (NM_001112697, exon 3 of 3)	19260.0	NM_001112697	12669.0	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	4.0	3.23	5.55	2.7	3.73	3.22	1.06	0.88	3.75
Merged-chr7-83568782-3	chr7	83568288	83569288	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16143.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	22.88	21.66	22.2	22.94	14.0	13.66	62.31	55.71	33.72
Merged-chr6-145212156-3	chr6	145211666	145212666	+	767.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163628, intron 1 of 2)	intron (NM_001163628, intron 1 of 2)	1019.0	NM_001362057	67636.0	Mm.486359	NM_133688	ENSMUSG00000040370	Etfrf1	4930469P12Rik|AL022899|Ghiso|Lyrm5	electron transfer flavoprotein regulatory factor 1	protein-coding	65.79	99.53	80.47	92.44	79.31	82.79	120.41	149.01	82.44
Merged-chr4-132969502-2	chr4	132969017	132970017	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4578.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	14.87	11.52	10.17	18.22	10.73	23.31	23.24	38.47	24.36
Merged-chr2-120494848-2	chr2	120494361	120495361	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177799, exon 10 of 21)	exon (NM_001177799, exon 10 of 21)	17952.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	5.72	5.53	1.85	8.77	5.6	1.61	4.22	9.29	6.25
Merged-chr8-68191941-2	chr8	68191438	68192438	+	767.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84590.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	13.73	22.12	24.05	10.12	10.26	10.45	33.8	24.76	7.49
Merged-chr4-150060104-2	chr4	150059612	150060612	+	767.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8342.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	18.88	7.37	1.85	46.56	53.65	52.25	9.51	0.44	0.0
Merged-chr8-37062486-2	chr8	37061988	37062988	+	767.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38250.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.86	5.07	1.85	2.7	1.4	0.0	2.11	4.42	5.0
Merged-chr1-131275342-3	chr1	131274822	131275822	+	767.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019777, intron 4 of 21)	intron (NM_019777, intron 4 of 21)	4241.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	25.74	14.75	12.95	12.14	5.6	12.86	23.24	10.61	18.74
Merged-chr17-5081064-2	chr17	5080549	5081549	+	767.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	85975.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.86	5.99	5.55	6.07	0.93	6.43	7.39	3.1	0.0
Merged-chr2-26907310-2	chr2	26906821	26907821	+	767.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011513, exon 3 of 3)	3' UTR (NM_011513, exon 3 of 3)	3321.0	NM_011513	20933.0	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	5.72	10.6	18.5	8.1	6.06	16.08	8.45	15.48	7.49
Merged-chr13-24599802-3	chr13	24599312	24600312	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_024599, intron 1 of 1)	intron (NR_024599, intron 1 of 1)	4955.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	6.29	5.53	0.0	6.75	1.4	1.61	2.11	0.44	6.25
Merged-chr12-69374599-1	chr12	69374099	69375099	+	767.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	2449.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	24.03	20.27	12.95	22.27	19.13	12.86	16.9	22.11	16.24
Merged-chr15-80014902-3	chr15	80014376	80015376	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011057)	promoter-TSS (NM_011057)	-68.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	28.6	18.43	44.4	29.01	30.79	53.85	35.91	20.78	24.98
Merged-chr7-132931645-1	chr7	132931145	132932145	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207302, intron 1 of 9)	CpG	503.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	362.68	341.44	353.33	375.82	274.31	216.22	320.02	270.16	232.95
Merged-chr3-96032866-1	chr3	96032366	96033366	+	767.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013841, exon 12 of 15)	exon (NM_013841, exon 12 of 15)	25589.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	23.45	18.43	20.35	8.1	4.2	8.04	4.22	6.19	6.25
Merged-chr10-77917063-3	chr10	77916479	77917479	+	767.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 29 of 33)	RLTR11A|LTR|ERVK	-14443.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	5.15	7.37	4.62	4.72	6.06	1.61	3.17	12.38	17.49
Merged-chr1-144335858-3	chr1	144335350	144336350	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86746.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.29	5.99	25.9	6.07	8.4	12.86	9.51	3.54	4.37
Merged-chr10-13189750-3	chr10	13189250	13190250	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181470, intron 3 of 10)	intron (NM_181470, intron 3 of 10)	3387.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	30.89	44.24	31.45	45.21	52.72	37.78	36.97	42.01	38.1
Merged-chr16-11705919-3	chr16	11705416	11706416	+	767.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-73786.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	25.17	26.26	36.07	24.96	21.93	19.29	43.3	37.58	14.36
Merged-chr17-25318559-2	chr17	25318058	25319058	+	767.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053260)	promoter-TSS (NM_053260)	-96.0	NM_053260	114662.0	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	21.74	16.59	17.57	32.39	16.33	14.47	10.56	2.65	1.25
Merged-chr11-34073922-2	chr11	34073413	34074413	+	767.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 8 of 20)	intron (NM_010696, intron 8 of 20)	24641.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	29.75	22.58	17.57	27.66	20.06	30.54	30.63	32.72	20.61
Merged-chr13-89543195-2	chr13	89542706	89543706	+	767.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013500, intron 1 of 4)	intron (NM_013500, intron 1 of 4)	2570.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	2.86	1.38	0.0	4.72	5.13	3.22	3.17	1.33	0.0
Merged-chr9-63975500-2	chr9	63975009	63976009	+	767.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	46550.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	8.01	16.59	13.87	59.38	31.72	25.72	24.29	20.34	8.74
Merged-chr4-104697917-2	chr4	104697418	104698418	+	767.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177259, intron 9 of 14)	intron (NM_177259, intron 9 of 14)	-68399.0	NM_133882	110382.0	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	5.15	6.45	7.4	4.05	2.8	2.41	4.22	1.33	1.87
Merged-chr12-104234968-3	chr12	104234485	104235485	+	767.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-1162.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	23.45	24.88	39.77	8.77	13.06	14.47	24.29	13.71	23.73
Merged-chr17-26750146-3	chr17	26749647	26750647	+	767.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-30932.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	17.73	17.05	13.87	16.87	7.0	32.96	17.96	8.4	25.61
Merged-chr16-76201484-3	chr16	76200981	76201981	+	767.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78868.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	53.77	37.32	18.5	81.64	47.12	35.37	55.98	52.18	22.48
Merged-chr5-92485058-3	chr5	92484570	92485570	+	767.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	20587.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	37.18	35.94	20.35	29.01	23.79	29.74	25.35	19.46	12.49
Merged-chr7-98694215-3	chr7	98693683	98694683	+	767.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	8745.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	5.15	5.07	2.77	12.14	4.2	4.82	2.11	5.31	1.25
Merged-chr5-145119667-3	chr5	145119164	145120164	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	intron (NM_023142, intron 1 of 9)	5408.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	34.32	36.4	37.92	31.71	22.86	30.54	35.91	39.35	37.47
Merged-chr4-11166732-3	chr4	11166234	11167234	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021897, intron 3 of 3)	B3|SINE|B2	10293.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	8.01	3.69	2.77	4.72	4.2	2.41	4.22	0.44	1.25
Merged-chr11-116807661-2	chr11	116807164	116808164	+	767.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347633, exon 5 of 5)	3' UTR (NM_001347633, exon 5 of 5)	20382.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	37.18	30.87	35.15	26.99	21.46	41.8	4.22	0.88	0.62
Merged-chr6-135169985-2	chr6	135169490	135170490	+	767.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1775.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	29.75	37.32	33.3	12.14	15.39	15.27	7.39	4.86	1.25
Merged-chr10-44325834-3	chr10	44325340	44326340	+	767.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314013, intron 5 of 6)	MTE2b|LTR|ERVL-MaLR	-33836.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	36.04	35.48	33.3	24.29	21.46	21.7	43.3	31.39	20.61
Merged-chr1-153401960-3	chr1	153401464	153402464	+	767.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12269.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	8.58	5.07	3.7	3.37	4.67	6.43	4.22	9.73	7.49
Merged-chr3-98069490-3	chr3	98068969	98069969	+	767.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	55931.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	18.88	17.97	15.72	20.92	12.6	9.65	11.62	11.05	12.49
Merged-chr9-7259894-2	chr9	7259413	7260413	+	767.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-12601.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.86	6.45	0.0	4.72	4.2	0.0	3.17	7.07	5.0
Merged-chr1-171016959-3	chr1	171016495	171017495	+	767.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1931.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	104.11	102.29	77.7	129.55	104.03	109.32	88.72	101.7	61.83
Merged-chr12-75688977-5	chr12	75688300	75689300	+	767.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19263.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	26.31	31.79	20.35	43.18	36.39	65.11	54.92	49.52	26.23
Merged-chr6-8650638-1	chr6	8650138	8651138	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 10 of 11)	intron (NM_001252266, intron 10 of 11)	107820.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.57	4.61	1.85	2.7	2.8	0.8	2.11	0.0	2.5
Merged-chr7-30194448-1	chr7	30193948	30194948	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009795, intron 1 of 10)	PB1D10|SINE|Alu	705.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	125.85	180.63	162.79	121.45	155.35	163.97	252.43	261.76	136.77
Merged-chr13-23586741-1	chr13	23586241	23587241	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290530)	promoter-TSS (NM_001290530)	-771.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	101.25	121.65	59.2	85.69	107.3	83.59	115.12	144.15	89.93
Merged-chrX-166183286-1	chrX	166182786	166183786	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310724, intron 3 of 3)	intron (NM_001310724, intron 3 of 3)	12832.0	NM_001310724	237221.0	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem nuclear organelle associated protein 8	protein-coding	0.57	2.76	0.0	8.77	3.27	0.8	4.22	2.21	0.0
Merged-chr10-80073890-1	chr10	80073390	80074390	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359635, intron 4 of 31)	intron (NM_001359635, intron 4 of 31)	1549.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	48.05	34.56	24.97	62.07	38.25	36.17	60.2	50.41	26.85
Merged-chrX-169880294-1	chrX	169879794	169880794	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	675.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	5.15	2.76	3.7	8.77	4.67	4.82	9.51	21.67	4.37
Merged-chr4-40774887-1	chr4	40774387	40775387	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17002.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	16.59	13.36	5.55	15.52	9.33	19.29	25.35	16.36	8.12
Merged-chr1-131135306-1	chr1	131134806	131135806	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2928.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	6.29	3.69	3.7	3.37	5.13	4.82	5.28	4.42	3.75
Merged-chr7-93080000-1	chr7	93079500	93080500	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021427, exon 1 of 2)	5' UTR (NM_021427, exon 1 of 2)	121.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	2.29	2.3	7.4	4.72	3.73	6.43	2.11	1.77	2.5
Merged-chr4-141732110-1	chr4	141731610	141732610	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8691.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	11.44	19.35	22.2	24.96	25.66	30.54	16.9	15.48	21.23
Merged-chr12-56541228-1	chr12	56540728	56541728	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4320.0	NM_009385	21869.0	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	5.15	3.69	1.85	2.7	1.4	1.61	2.11	3.1	2.5
Merged-chr7-81209127-1	chr7	81208627	81209627	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4677.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.58	5.53	12.02	12.82	8.4	9.65	10.56	1.77	6.25
Merged-chr16-33075148-1	chr16	33074648	33075648	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	MTEb|LTR|ERVL-MaLR	12627.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	13.16	10.6	24.05	10.12	10.73	12.86	7.39	12.38	11.24
Merged-chr8-46432471-2	chr8	46431974	46432974	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38563.0	NM_007981	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	13.16	11.06	13.87	10.8	6.53	3.22	26.4	15.48	11.24
Merged-chr4-36158391-1	chr4	36157891	36158891	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-313187.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.43	1.38	1.85	2.02	9.33	0.0	2.11	4.86	2.5
Merged-chrX-96255476-1	chrX	96254976	96255976	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177789, intron 4 of 6)	intron (NM_177789, intron 4 of 6)	12659.0	NR_029801	723814.0		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	24.6	28.11	21.27	39.13	19.13	31.35	24.29	15.03	26.23
Merged-chr9-99384305-1	chr9	99383805	99384805	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25775.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	6.29	9.68	7.4	6.75	6.06	10.45	5.28	3.1	3.75
Merged-chr4-142054292-1	chr4	142053792	142054792	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-30006.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	15.45	7.83	15.72	14.17	16.33	14.47	20.07	13.27	16.86
Merged-chr17-34296866-1	chr17	34296366	34297366	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9001.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	438.19	393.97	209.04	180.82	158.61	107.71	194.34	264.42	90.56
Merged-chr18-56934657-3	chr18	56934157	56935157	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1603.0	NR_033455	100038410.0	Mm.353669	NR_033455		Gm10536	-	predicted gene 10536	ncRNA	8.58	2.76	3.7	12.82	5.13	8.04	6.34	5.75	3.12
Merged-chr13-54983233-3	chr13	54982743	54983743	+	767.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153131, intron 1 of 15)	intron (NM_153131, intron 1 of 15)	33832.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	7.44	3.23	3.7	7.42	0.93	3.22	2.11	4.86	7.49
Merged-chr8-106933337-1	chr8	106932837	106933837	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2413.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	4.58	2.76	9.25	8.1	2.33	8.84	5.28	1.33	6.25
Merged-chr15-85670636-1	chr15	85670136	85671136	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33137.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	17.16	17.05	31.45	19.57	9.33	28.94	33.8	34.05	29.35
Merged-chr12-100021784-1	chr12	100021284	100022284	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57285.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	27.46	27.65	33.3	37.78	31.72	41.8	30.63	25.65	24.36
Merged-chr2-154305678-1	chr2	154305178	154306178	+	767.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1566.0	NM_001025574	433492.0	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838	BPI fold containing family B, member 9B	protein-coding	30.89	32.72	37.0	60.05	39.19	84.4	55.98	57.92	21.23
Merged-chr15-67414512-5	chr15	67414011	67415011	+	766.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	187742.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	12.01	17.05	26.82	18.22	14.0	23.31	14.79	15.03	19.98
Merged-chr11-83385668-3	chr11	83385163	83386163	+	766.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027915, intron 17 of 20)	intron (NM_027915, intron 17 of 20)	-23474.0	NM_001361566	276952.0	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	26.31	18.89	17.57	37.11	24.26	28.13	22.18	22.11	12.49
Merged-chr11-101673352-2	chr11	101672856	101673856	+	766.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7815.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	2.86	2.3	1.85	30.36	19.13	33.76	20.07	19.46	10.62
Merged-chr14-66811198-2	chr14	66810696	66811696	+	766.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 11 of 13)	intron (NM_009955, intron 11 of 13)	57404.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	1.72	4.15	6.47	6.07	3.27	12.86	2.11	7.07	5.62
Merged-chr7-24638280-3	chr7	24637770	24638770	+	766.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133743, intron 2 of 4)	intron (NM_133743, intron 2 of 4)	1700.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	5.15	2.3	3.7	6.07	3.73	1.61	6.34	4.86	9.37
Merged-chr17-34643042-3	chr17	34642523	34643523	+	766.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	38.9	41.47	35.15	33.06	29.86	24.92	46.47	48.64	13.12
Merged-chr10-8000169-2	chr10	7999682	8000682	+	766.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-44059.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	12.01	13.82	13.87	7.42	3.27	9.65	10.56	3.1	13.74
Merged-chr4-11999206-2	chr4	11998713	11999713	+	766.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	32639.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	6.86	2.76	3.7	5.4	3.27	3.22	6.34	1.77	5.0
Merged-chr15-102461175-3	chr15	102460721	102461721	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2051.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	17.73	25.34	29.6	27.66	20.99	32.96	29.57	22.99	9.37
Merged-chr2-127113962-2	chr2	127113468	127114468	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144818, intron 12 of 17)	intron (NM_144818, intron 12 of 17)	19986.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	25.74	11.98	29.6	19.57	15.39	12.86	13.73	12.38	11.87
Merged-chr13-51881985-1	chr13	51881485	51882485	+	766.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35310.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	12.59	6.91	2.77	5.4	3.27	4.82	4.22	4.42	6.25
Merged-chr3-85195258-3	chr3	85194779	85195779	+	766.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-122240.0	NR_040542	73283.0	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	30.32	26.73	18.5	29.69	33.59	17.68	14.79	27.86	18.74
Merged-chr7-27220202-3	chr7	27219701	27220701	+	766.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181593, intron 1 of 6)	intron (NM_181593, intron 1 of 6)	8396.0	NM_181593	233011.0	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	16.59	10.6	8.32	12.14	9.33	5.63	33.8	27.86	14.99
Merged-chr14-121346732-3	chr14	121346223	121347223	+	766.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	32507.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	3.43	6.45	12.95	9.45	9.8	11.25	11.62	2.21	9.99
Merged-chr15-78926693-2	chr15	78926184	78927184	+	766.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008495)	promoter-TSS (NM_008495)	-41.0	NM_008495	16852.0	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	13.16	11.06	11.1	29.69	25.19	45.82	5.28	2.21	6.87
Merged-chr3-9914741-1	chr3	9914241	9915241	+	766.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81062.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	9.72	3.69	1.85	1.35	3.73	0.0	7.39	4.86	3.75
Merged-chr7-72162482-1	chr7	72161982	72162982	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 16 of 22)	intron (NM_001024703, intron 16 of 22)	144113.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	7.44	4.15	9.25	2.02	3.27	9.65	0.0	1.77	2.5
Merged-chr8-128679940-1	chr8	128679440	128680440	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5714.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	78.94	95.84	98.05	70.85	53.65	82.79	99.28	85.34	76.82
Merged-chr3-132227833-2	chr3	132227326	132228326	+	766.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	142534.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.43	2.76	3.7	4.72	4.67	8.04	2.11	2.65	5.0
Merged-chr9-45386889-2	chr9	45386399	45387399	+	766.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022004, intron 1 of 7)	intron (NM_022004, intron 1 of 7)	-12810.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	13.73	7.83	5.55	8.77	7.0	11.25	8.45	0.88	0.0
Merged-chr10-20040887-3	chr10	20040385	20041385	+	766.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	MTD|LTR|ERVL-MaLR	106359.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	37.76	52.07	24.97	47.23	38.72	40.19	44.36	55.71	31.23
Merged-chr6-134106023-3	chr6	134105527	134106527	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	70327.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	14.87	11.06	10.17	18.22	10.73	15.27	12.67	6.63	11.24
Merged-chr14-45607561-3	chr14	45607052	45608052	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 8 of 12)	intron (NM_176845, intron 8 of 12)	50501.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	8.58	5.07	12.02	8.1	7.93	1.61	45.42	36.7	9.37
Merged-chr10-66918618-3	chr10	66918118	66919118	+	766.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_138560, exon 2 of 5)	non-coding (NR_138560, exon 2 of 5)	1766.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	2.86	5.07	5.55	6.07	4.2	3.22	9.51	3.1	3.75
Merged-chr2-44817998-2	chr2	44817505	44818505	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172662, intron 3 of 10)	ORR1B1|LTR|ERVL-MaLR	43617.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	4.0	3.69	3.7	6.75	3.73	6.43	4.22	0.88	7.49
Merged-chr6-35536242-2	chr6	35535733	35536733	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008098, intron 1 of 3)	intron (NM_008098, intron 1 of 3)	3655.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	11.44	12.9	14.8	15.52	12.13	10.45	15.84	10.61	11.24
Merged-chr9-69994876-2	chr9	69994361	69995361	+	766.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	5395.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	16.02	13.82	12.02	14.17	7.93	29.74	8.45	11.94	19.36
Merged-chr3-18243196-2	chr3	18242717	18243717	+	766.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007825, exon 1 of 6)	5' UTR (NM_007825, exon 1 of 6)	121.0	NM_007825	13123.0	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	2.86	2.3	1.85	4.05	4.67	4.82	3.17	1.33	5.62
Merged-chr4-108339542-2	chr4	108339046	108340046	+	766.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027250, exon 3 of 3)	3' UTR (NM_027250, exon 3 of 3)	11394.0	NM_027250	69893.0	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	5.15	2.3	0.0	2.7	2.8	8.04	3.17	2.65	2.5
Merged-chr3-116166427-2	chr3	116165879	116166879	+	766.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER104|DNA|TcMar-Tc2	-36691.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	36.61	67.74	34.22	69.5	112.9	34.56	57.03	72.96	39.35
Merged-chr1-52817253-3	chr1	52816766	52817766	+	766.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	CpG	422.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	13.16	14.75	13.87	23.62	16.33	16.88	22.18	18.57	8.74
Merged-chr6-33263208-3	chr6	33262706	33263706	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347089, intron 1 of 9)	B1F|SINE|Alu	14078.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	29.75	57.14	27.75	24.96	41.05	6.43	48.58	49.52	18.74
Merged-chr8-125771381-3	chr8	125770875	125771875	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 27 of 33)	intron (NM_175561, intron 27 of 33)	37172.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	6.29	3.69	4.62	10.12	4.67	3.22	8.45	4.86	6.25
Merged-chr2-69109481-3	chr2	69108983	69109983	+	766.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172856, exon 10 of 10)	3' UTR (NM_172856, exon 10 of 10)	-26317.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	6.29	4.61	8.32	4.05	7.0	13.66	3.17	4.42	1.25
Merged-chr15-102525297-2	chr15	102524831	102525831	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018787)	promoter-TSS (NM_018787)	-710.0	NM_018787	54615.0	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	6.86	4.15	0.0	6.75	1.87	4.82	5.28	2.65	2.5
Merged-chr15-6441958-1	chr15	6441458	6442458	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-3375.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	6.86	5.99	1.85	6.75	4.67	16.08	2.11	0.88	2.5
Merged-chr10-21998837-2	chr10	21998362	21999362	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001161850, exon 12 of 12)	3' UTR (NM_001161850, exon 12 of 12)	4196.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	32.04	21.2	24.05	47.23	22.39	22.51	45.42	34.05	28.73
Merged-chr8-56067062-1	chr8	56066562	56067562	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	126237.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	14.3	5.99	18.5	17.54	12.13	13.66	20.07	11.05	8.12
Merged-chr15-8681250-2	chr15	8680740	8681740	+	766.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	29567.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	7.44	5.99	12.95	4.72	4.67	9.65	3.17	6.19	10.62
Merged-chr9-108663097-1	chr9	108662597	108663597	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020520, intron 1 of 8)	intron (NM_020520, intron 1 of 8)	999.0	NM_020520	57279.0	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	18.31	12.9	7.4	12.14	10.26	11.25	12.67	8.4	11.24
Merged-chr7-79883731-2	chr7	79883222	79884222	+	766.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	intron (NM_009682, intron 4 of 5)	-35512.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	41.76	36.86	38.85	47.23	21.46	36.97	28.52	16.8	29.98
Merged-chr7-90150497-2	chr7	90149990	90150990	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	20277.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	28.03	23.5	5.55	8.77	19.13	10.45	14.79	12.82	8.12
Merged-chr3-122104591-1	chr3	122104091	122105091	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 13 of 49)	intron (NM_007378, intron 13 of 49)	60131.0	NM_007378	11304.0	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	4.58	2.3	0.0	3.37	1.87	0.0	2.11	2.21	1.87
Merged-chr6-100191375-2	chr6	100190889	100191889	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	95969.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.0	4.15	3.7	4.72	3.73	3.22	1.06	1.33	5.62
Merged-chr9-5274538-2	chr9	5274035	5275035	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-23982.0	NM_009807	12362.0	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	4.0	3.23	12.95	4.72	1.87	2.41	4.22	1.33	1.25
Merged-chr1-88275645-1	chr1	88275145	88276145	+	766.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1912.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	12.01	18.43	12.95	20.92	12.6	24.11	16.9	11.5	28.1
Merged-chr17-5238020-1	chr17	5237520	5238520	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	180747.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	69.79	71.88	60.12	62.07	57.38	47.42	55.98	35.37	23.11
Merged-chr15-51448482-2	chr15	51447920	51448920	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52810.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	34.32	34.56	28.67	25.64	19.13	32.15	25.35	16.36	8.12
Merged-chr7-5059650-2	chr7	5059140	5060140	+	766.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290432, exon 5 of 6)	exon (NM_001290432, exon 5 of 6)	-2503.0	NM_133671	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	24.6	24.88	35.15	25.64	13.06	58.68	35.91	27.41	28.73
Merged-chr4-34387032-3	chr4	34386509	34387509	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163606.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	103.54	109.67	47.17	112.0	94.23	45.01	72.88	83.13	68.7
Merged-chr5-76525304-3	chr5	76524787	76525787	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4020.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	37.18	52.99	86.02	41.16	42.92	53.05	58.09	66.77	50.59
Merged-chr7-96406752-3	chr7	96406277	96407277	+	766.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-64813.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	12.59	23.96	12.02	16.87	16.79	15.27	0.0	1.77	6.25
Merged-chr5-125307762-3	chr5	125307259	125308259	+	766.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	33335.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	33.18	40.55	40.7	41.16	20.53	42.6	57.03	63.67	24.98
Merged-chr18-66520369-3	chr18	66519889	66520889	+	766.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16211.0	NR_040528	100503565.0	Mm.98256	NR_040528		Gm9926	-	predicted gene 9926	ncRNA	4.58	5.07	3.7	6.75	3.73	6.43	7.39	6.63	1.25
Merged-chr10-17186413-2	chr10	17185946	17186946	+	766.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90664.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.58	7.83	5.55	8.77	5.6	8.84	8.45	6.19	11.24
Merged-chr2-118779698-3	chr2	118779213	118780213	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_170593)	promoter-TSS (NM_170593)	-6.0	NM_170593	214240.0	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	3.43	0.46	1.85	4.05	0.93	4.82	2.11	5.31	1.25
Merged-chr17-34657504-3	chr17	34656994	34657994	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10348.0	NM_017406	12915.0	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	13.73	7.37	2.77	8.77	2.8	4.82	10.56	7.96	5.0
Merged-chr6-66946089-1	chr6	66945589	66946589	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	49198.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	8.58	10.14	10.17	8.77	7.46	12.86	14.79	5.31	11.24
Merged-chr16-8784893-1	chr16	8784393	8785393	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-45207.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	5.15	3.23	3.7	5.4	3.73	0.0	1.06	2.21	3.75
Merged-chr3-55442200-1	chr3	55441700	55442700	+	766.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 4 of 16)	intron (NM_001357475, intron 4 of 16)	-19528.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.43	4.15	3.7	7.42	10.73	8.04	2.11	5.31	8.12
Merged-chr15-27723979-3	chr15	27723495	27724495	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-42453.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	37.18	29.03	28.67	42.51	30.32	41.8	33.8	35.82	26.23
Merged-chr10-67647359-3	chr10	67646831	67647831	+	766.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75372.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	100.11	61.75	59.2	72.19	57.85	50.64	85.55	103.47	65.58
Merged-chr8-79491507-2	chr8	79491025	79492025	+	766.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92057.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	8.01	8.75	7.4	6.75	4.67	16.08	6.34	4.42	3.75
Merged-chr5-135887873-3	chr5	135887394	135888394	+	766.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013560)	promoter-TSS (NM_013560)	-25.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	6.86	2.76	0.0	4.05	3.27	7.23	7.39	2.21	1.25
Merged-chr3-9647196-2	chr3	9646711	9647711	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37126.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	10.3	2.3	7.4	18.89	12.6	9.65	9.51	11.94	5.0
Merged-chr19-47127727-2	chr19	47127239	47128239	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011053, intron 30 of 35)	(TG)n|Simple_repeat|Simple_repeat	10555.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	23.45	10.14	4.62	18.22	7.46	22.51	24.29	16.8	18.11
Merged-chr13-43557231-2	chr13	43556737	43557737	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081059, intron 1 of 8)	URR1A|DNA|hAT-Charlie	2954.0	NM_001081059	76137.0	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	19.45	6.91	17.57	17.54	5.13	22.51	10.56	12.82	6.87
Merged-chr15-61541046-2	chr15	61540534	61541534	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	233417.0	NR_040350	432956.0	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	3.43	3.69	5.55	7.42	8.4	4.02	6.34	2.65	2.5
Merged-chr5-135467441-2	chr5	135466963	135467963	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-72917.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	62.35	74.19	63.82	78.27	52.72	85.2	60.2	57.48	62.45
Merged-chr7-43685562-3	chr7	43685046	43686046	+	766.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4872.0	NM_174866	317653.0	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	2.86	5.99	1.85	6.07	2.8	4.82	6.34	2.65	2.5
Merged-chr9-40761566-1	chr9	40761066	40762066	+	766.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39707.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	68.65	113.35	38.85	56.0	49.92	52.25	11.62	3.98	3.75
Merged-chr8-128551568-3	chr8	128551079	128552079	+	766.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134075.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	24.6	10.14	7.4	10.12	8.4	1.61	3.17	2.21	6.87
Merged-chr8-120117113-1	chr8	120116613	120117613	+	766.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	L2a|LINE|L2	2961.0	NM_001163761	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	15.45	8.75	19.42	17.54	15.39	27.33	21.12	17.69	14.99
Merged-chr18-84859637-3	chr18	84859136	84860136	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	8298.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	19.45	14.75	8.32	22.27	13.06	8.84	7.39	10.61	10.62
Merged-chr1-88253602-1	chr1	88253102	88254102	+	766.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	15806.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	20.02	5.99	15.72	8.1	12.13	8.04	10.56	7.07	24.98
Merged-chr7-44856668-3	chr7	44856074	44857074	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021549)	promoter-TSS (NM_021549)	-572.0	NM_021549	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	70.36	68.2	68.45	51.95	35.92	84.4	90.83	97.28	79.94
Merged-chr3-34033981-3	chr3	34033461	34034461	+	766.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	13882.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	40.62	64.51	40.7	45.21	51.32	46.62	65.48	63.67	51.21
Merged-chr2-103655252-2	chr2	103654734	103655734	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	88924.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	29.17	19.81	26.82	26.99	17.26	11.25	15.84	18.13	17.49
Merged-chr2-131086288-2	chr2	131085773	131086773	+	766.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011426, exon 1 of 21)	5' UTR (NM_011426, exon 1 of 21)	492.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	71.51	93.08	89.72	112.0	122.69	150.31	98.23	110.98	68.7
Merged-chr5-97007094-2	chr5	97006578	97007578	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	9389.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	10.87	12.44	11.1	34.41	24.72	11.25	34.85	18.13	13.12
Merged-chr4-149772626-2	chr4	149772133	149773133	+	766.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	1634.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	44.62	32.72	18.5	17.54	25.66	28.13	52.81	42.89	43.72
Merged-chr7-80388784-3	chr7	80388260	80389260	+	766.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010194)	promoter-TSS (NM_010194)	-814.0	NM_010194	14159.0	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	60.64	59.44	83.25	63.42	62.51	81.18	87.66	91.53	64.95
Merged-chr8-70598527-2	chr8	70598038	70599038	+	766.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133772, intron 14 of 16)	CpG	4057.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	4.58	5.07	5.55	4.72	2.33	0.8	5.28	3.98	2.5
Merged-chr2-132008249-3	chr2	132007744	132008744	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175445, intron 3 of 10)	intron (NM_175445, intron 3 of 10)	21744.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	23.45	36.86	24.97	49.25	34.06	56.27	38.02	21.22	42.47
Merged-chr18-5834585-3	chr18	5834080	5835080	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241933.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	14.87	13.82	12.02	6.07	11.2	20.9	10.56	13.27	19.36
Merged-chr11-116103701-3	chr11	116103190	116104190	+	766.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	6545.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	56.63	64.05	46.25	42.51	19.59	33.76	38.02	33.6	38.1
Merged-chr6-120908294-2	chr6	120907792	120908792	+	766.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	BGLII|LTR|ERVK	8532.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	5.72	1.38	1.85	5.4	1.87	1.61	4.22	2.21	3.12
Merged-chr2-172346172-2	chr2	172345705	172346705	+	766.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025912, intron 1 of 2)	intron (NM_025912, intron 1 of 2)	628.0	NM_025912	67017.0	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	22.31	22.58	23.12	29.69	30.32	34.56	28.52	25.2	13.74
Merged-chr1-191950455-2	chr1	191949952	191950952	+	766.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26918.0	NM_001177900	74023.0	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	5.72	5.53	1.85	4.72	11.66	2.41	20.07	6.63	5.62
Merged-chr11-46457918-3	chr11	46457416	46458416	+	766.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134250, intron 2 of 6)	RMER6B|LTR|ERVK	2985.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	3.43	4.15	0.0	6.75	7.46	6.43	7.39	3.98	7.49
Merged-chr18-25331243-2	chr18	25330742	25331742	+	766.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033532, intron 6 of 10)	Lx2|LINE|L1	162222.0	NM_001033532	225289.0	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	5.72	3.69	1.85	6.75	6.53	9.65	1.06	3.54	7.49
Merged-chr18-49827623-3	chr18	49827108	49828108	+	766.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5389.0	NM_001081371	240283.0	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	10.3	3.23	16.65	7.42	6.53	9.65	3.17	9.29	6.87
Merged-chr1-143740225-3	chr1	143739739	143740739	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038594)	promoter-TSS (NM_001038594)	-208.0	NM_001038594	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	33.18	39.63	31.45	43.18	44.32	51.44	30.63	42.01	30.6
Merged-chr11-114887590-2	chr11	114887081	114888081	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2460.0	NM_001347654	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	20.59	19.81	22.2	12.14	8.4	25.72	10.56	15.48	6.87
Merged-chr5-151233682-3	chr5	151233174	151234174	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-43481.0	NR_153382	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	4.0	5.07	0.92	2.02	3.27	9.65	3.17	3.98	3.75
Merged-chr4-11156971-2	chr4	11156473	11157473	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199105, intron 1 of 4)	intron (NM_001199105, intron 1 of 4)	532.0	NM_021897	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	62.93	94.0	74.0	93.11	97.03	74.75	90.83	95.07	61.83
Merged-chr14-122601832-2	chr14	122601320	122602320	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 6 of 24)	intron (NR_153443, intron 6 of 24)	67492.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	5.72	8.29	2.77	10.12	7.46	6.43	9.51	5.31	3.75
Merged-chr13-62956962-1	chr13	62956462	62957462	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-7931.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.58	2.3	4.62	10.8	12.13	9.65	6.34	7.07	3.75
Merged-chr11-57522345-1	chr11	57521845	57522845	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	3680.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	14.87	12.9	24.97	12.82	9.8	32.96	8.45	13.71	14.99
Merged-chr9-50866049-1	chr9	50865549	50866549	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286553, intron 5 of 16)	MTC|LTR|ERVL-MaLR	9125.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	5.72	3.23	1.85	8.1	3.73	6.43	6.34	2.21	8.74
Merged-chr6-92944386-1	chr6	92943886	92944886	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	intron (NR_015530, intron 1 of 2)	3804.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.72	3.23	0.0	5.4	6.53	4.82	1.06	0.88	1.25
Merged-chr14-55608955-1	chr14	55608455	55609455	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159417, exon 10 of 10)	exon (NM_001159417, exon 10 of 10)	4376.0	NM_001159418	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	10.87	11.52	29.6	10.12	6.53	14.47	5.28	6.19	11.87
Merged-chr10-99179338-2	chr10	99178846	99179846	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	71211.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	116.13	128.1	43.47	131.57	95.17	74.75	96.11	130.0	59.95
Merged-chr12-91400463-1	chr12	91399963	91400963	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113404)	promoter-TSS (NM_001113404)	-530.0	NM_001113404	22095.0	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	1.14	2.3	0.92	2.7	2.33	1.61	3.17	3.98	7.49
Merged-chr9-25158444-1	chr9	25157944	25158944	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-6663.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	5.72	8.29	0.0	10.12	9.8	24.11	7.39	7.96	3.75
Merged-chr12-116028299-1	chr12	116027799	116028799	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19425.0	NM_001004066	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	6.86	3.23	0.0	1.35	5.13	4.82	3.17	3.1	1.25
Merged-chr13-109212309-1	chr13	109211809	109212809	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-112435.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.72	1.84	1.85	5.4	2.8	1.61	1.06	0.44	4.37
Merged-chr6-129876733-3	chr6	129876242	129877242	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133203)	promoter-TSS (NM_133203)	-70.0	NM_133203	170733.0	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	4.0	1.84	6.47	2.02	3.27	1.61	4.22	7.96	3.75
Merged-chr9-42896656-1	chr9	42896156	42897156	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	47715.0	NM_175481	110637.0	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	13.16	5.53	6.47	8.77	5.6	3.22	8.45	3.54	1.25
Merged-chr10-37249714-1	chr10	37249214	37250214	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110788.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	34.32	24.88	35.15	22.27	14.93	47.42	30.63	20.78	26.23
Merged-chr4-82633355-1	chr4	82632855	82633855	+	766.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125366.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	4.0	3.23	3.7	2.02	0.0	0.0	3.17	5.31	11.87
Merged-chr1-161480011-1	chr1	161479511	161480511	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14646.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	12.01	4.15	4.62	13.49	2.33	6.43	2.11	5.31	2.5
Merged-chr1-182955306-1	chr1	182954806	182955806	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016928, intron 1 of 3)	intron (NM_016928, intron 1 of 3)	518.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	30.89	22.12	19.42	14.17	10.26	7.23	5.28	5.31	2.5
Merged-chr2-70793533-1	chr2	70793033	70794033	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	ORR1D-int|LTR|ERVL-MaLR	31947.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	21.74	23.5	28.67	10.12	5.6	20.09	27.46	19.46	20.61
Merged-chr1-52119898-1	chr1	52119398	52120398	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205313, intron 1 of 24)	intron (NM_001205313, intron 1 of 24)	276.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	65.21	107.36	61.05	91.76	103.1	90.02	83.44	107.0	71.82
Merged-chr9-96384317-1	chr9	96383817	96384817	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-19886.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	9.72	5.07	8.32	10.12	9.8	5.63	3.17	3.1	2.5
Merged-chr15-12119159-1	chr15	12118659	12119659	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358823, intron 2 of 18)	intron (NM_001358823, intron 2 of 18)	1308.0	NM_001358823	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	65.79	25.8	21.27	54.65	28.92	32.15	44.36	31.84	18.74
Merged-chr8-27137144-3	chr8	27136651	27137651	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5759.0	NR_045840	71082.0	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	2.29	1.38	5.55	1.35	3.27	3.22	2.11	2.65	2.5
Merged-chr15-41447362-3	chr15	41446887	41447887	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358978)	promoter-TSS (NM_001358978)	-95.0	NR_152565	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.43	1.84	10.17	26.99	21.93	17.68	5.28	2.65	2.5
Merged-chr1-105932643-1	chr1	105932143	105933143	+	766.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	57639.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	9.72	1.84	1.85	2.02	5.13	4.82	8.45	1.33	2.5
Merged-chr10-120247656-2	chr10	120247154	120248154	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	4.0	3.69	10.17	9.45	1.4	1.61	5.28	3.98	6.87
Merged-chr12-40719153-1	chr12	40718653	40719653	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 16 of 52)	Lx6|LINE|L1	273100.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	4.0	4.61	1.85	4.05	5.13	7.23	7.39	6.63	3.75
Merged-chr6-120467186-3	chr6	120466701	120467701	+	766.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008359, intron 1 of 12)	intron (NM_008359, intron 1 of 12)	4004.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	61.78	52.07	34.22	73.54	55.05	78.77	58.09	64.11	58.08
Merged-chr3-99211066-2	chr3	99210540	99211540	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027462, intron 4 of 5)	intron (NM_027462, intron 4 of 5)	-11587.0	NR_105852	102465230.0		NR_105852	ENSMUSG00000098918	Mir6481	Gm27744|mmu-mir-6481	microRNA 6481	ncRNA	12.01	17.05	22.2	8.1	14.0	10.45	15.84	17.24	3.75
Merged-chr4-46172044-1	chr4	46171544	46172544	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033201, exon 23 of 23)	3' UTR (NM_001033201, exon 23 of 23)	24267.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	5.72	2.76	3.7	5.4	3.73	5.63	9.51	3.54	9.37
Merged-chr4-9790764-1	chr4	9790264	9791264	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030693, intron 3 of 3)	intron (NR_030693, intron 3 of 3)	20179.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	5.72	4.61	3.7	2.02	2.8	0.0	7.39	4.42	11.24
Merged-chr1-86398563-2	chr1	86398063	86399063	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9202.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	17.16	20.27	16.65	20.24	17.26	19.29	24.29	33.16	30.6
Merged-chr7-105762294-2	chr7	105761812	105762812	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162943, exon 10 of 21)	exon (NM_001162943, exon 10 of 21)	-10077.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	26.31	14.75	4.62	24.96	9.33	0.0	28.52	25.2	8.74
Merged-chr7-45343759-1	chr7	45343259	45344259	+	766.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029741, exon 22 of 30)	exon (NM_029741, exon 22 of 30)	8490.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	4.0	3.23	1.85	1.35	3.27	4.82	4.22	0.44	1.25
Merged-chr6-134535019-3	chr6	134534525	134535525	+	765.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	31888.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	85.81	91.7	44.4	64.77	70.44	71.54	152.09	158.74	60.58
Merged-chr16-33077294-3	chr16	33076859	33077859	+	765.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	14838.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	36.61	52.99	57.35	61.4	53.65	58.68	40.14	59.69	31.23
Merged-chr5-45919806-3	chr5	45919302	45920302	+	765.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1|DNA|hAT-Tip100	12607.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	8.01	15.67	5.55	13.49	10.26	12.86	28.52	16.36	23.11
Merged-chr18-68244650-3	chr18	68244118	68245118	+	765.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 2 of 3)	intron (NM_001357444, intron 2 of 3)	16355.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	4.0	3.69	1.85	9.45	3.27	6.43	3.17	3.54	5.0
Merged-chr2-35162811-3	chr2	35162304	35163304	+	765.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_012018, exon 31 of 44)	exon (NM_012018, exon 31 of 44)	30570.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	37.18	60.36	44.4	59.38	41.52	44.21	44.36	41.12	28.73
Merged-chr16-84703133-5	chr16	84702622	84703622	+	765.886658	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9901.0	NR_132106	100653389.0	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	13.73	7.83	1.85	7.42	3.73	9.65	8.45	5.31	1.87
Merged-chr8-46849576-3	chr8	46849063	46850063	+	765.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	109818.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	108.69	139.16	85.1	110.65	101.7	96.45	125.69	160.51	81.81
Merged-chr1-74363642-2	chr1	74363125	74364125	+	765.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033345, intron 4 of 9)	intron (NM_001033345, intron 4 of 9)	1517.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	10.87	7.83	11.1	24.96	18.66	33.76	27.46	22.11	23.73
Merged-chr16-4902566-3	chr16	4902069	4903069	+	765.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 1 of 17)	intron (NM_001357062, intron 1 of 17)	16469.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	10.87	3.69	10.17	6.07	6.53	11.25	6.34	3.54	9.99
Merged-chr2-142768962-2	chr2	142768458	142769458	+	765.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	MER2B|DNA|TcMar-Tigger	132506.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.58	10.6	9.25	8.77	5.6	9.65	8.45	5.75	8.74
Merged-chr15-89430856-3	chr15	89430306	89431306	+	765.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_004843)	promoter-TSS (NR_004843)	-879.0	NR_037153	12651.0	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	81.23	119.34	103.59	72.19	72.78	77.97	76.05	120.71	64.95
Merged-chr8-119848021-3	chr8	119847484	119848484	+	765.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7405.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	23.45	17.51	16.65	15.52	9.8	12.86	23.24	21.67	13.74
Merged-chr19-23149968-2	chr19	23149428	23150428	+	765.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035423)	TTS (NR_035423)	497.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	7.44	4.61	3.7	18.22	17.73	31.35	34.85	20.78	18.74
Merged-chr6-143231064-3	chr6	143230582	143231582	+	765.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-14806.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	16.02	10.14	5.55	17.54	8.86	14.47	9.51	11.05	8.74
Merged-chr6-119373384-2	chr6	119372855	119373855	+	765.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	intron (NM_197985, intron 1 of 7)	15379.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	15.45	21.2	29.6	21.59	20.53	28.13	23.24	18.57	23.73
Merged-chr2-127453992-3	chr2	127453486	127454486	+	765.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9421.0	NM_029629	68126.0	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	6.29	1.38	0.0	6.07	3.73	3.22	3.17	0.88	1.25
Merged-chr12-80259778-3	chr12	80259290	80260290	+	765.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	CpG	581.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	72.08	52.07	68.45	62.07	56.45	77.16	98.23	59.69	54.96
Merged-chr4-124803075-2	chr4	124802541	124803541	+	765.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008636, intron 1 of 10)	intron (NM_008636, intron 1 of 10)	492.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	149.31	133.17	91.57	105.93	91.44	82.79	113.01	138.4	69.95
Merged-chr16-30600629-3	chr16	30600145	30601145	+	765.738098	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177632, exon 1 of 1)	exon (NM_177632, exon 1 of 1)	922.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	138.44	149.29	141.52	125.5	96.57	104.49	166.88	134.86	104.92
Merged-chr16-57354616-3	chr16	57354131	57355131	+	765.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	1354.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	29.75	31.33	28.67	24.96	21.93	25.72	28.52	35.82	28.73
Merged-chr9-66277891-2	chr9	66277376	66278376	+	765.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72574.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	18.88	13.36	5.55	18.89	7.93	9.65	25.35	13.71	3.12
Merged-chr15-67301854-1	chr15	67301354	67302354	+	765.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	75085.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.58	3.23	4.62	7.42	11.2	5.63	6.34	4.86	2.5
Merged-chr5-139832295-1	chr5	139831795	139832795	+	765.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5401.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	9.72	6.45	9.25	6.75	4.67	3.22	8.45	2.21	3.75
Merged-chr16-94250284-3	chr16	94249830	94250830	+	765.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	39961.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	45.76	55.29	40.7	51.95	53.65	40.99	57.03	50.41	29.35
Merged-chr2-14494353-3	chr2	14493832	14494832	+	765.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012305, intron 12 of 12)	intron (NM_001012305, intron 12 of 12)	105934.0	NM_001012305	277468.0	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	7.44	12.44	6.47	6.07	8.4	16.88	11.62	6.19	5.0
Merged-chr12-86893263-2	chr12	86892752	86893752	+	765.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8438.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	49.77	48.38	37.92	57.35	30.32	47.42	118.29	103.47	68.7
Merged-chr10-67215305-2	chr10	67214800	67215800	+	765.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207221, exon 4 of 26)	exon (NM_207221, exon 4 of 26)	29550.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	30.32	57.6	39.77	39.13	27.52	53.05	50.7	52.62	38.72
Merged-chr12-3897304-2	chr12	3896788	3897788	+	765.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 5 of 17)	intron (NM_153743, intron 5 of 17)	5544.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	13.73	17.97	24.97	16.19	15.39	25.72	24.29	19.46	14.99
Merged-chr16-91623235-2	chr16	91622737	91623737	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357351, intron 19 of 21)	intron (NM_001357351, intron 19 of 21)	-4238.0	NM_138664	246738.0	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	6.29	4.15	7.4	3.37	2.8	3.22	7.39	6.63	3.75
Merged-chr9-13668994-2	chr9	13668490	13669490	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	6530.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.72	5.99	11.1	6.75	2.33	8.04	9.51	7.07	2.5
Merged-chr11-76677202-2	chr11	76676679	76677679	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2694.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	5.15	0.92	0.0	2.02	1.87	1.61	5.28	0.0	1.25
Merged-chr18-61548988-2	chr18	61548494	61549494	+	765.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6279.0	NM_001357499	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	3.43	6.91	1.85	4.05	3.73	0.0	3.17	0.88	2.5
Merged-chr10-80955828-3	chr10	80955336	80956336	+	765.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	25745.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.57	1.84	0.0	4.72	0.0	4.82	3.17	0.88	6.25
Merged-chr17-45474916-3	chr17	45474420	45475420	+	765.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027649)	promoter-TSS (NM_027649)	18.0	NM_027649	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	1.14	0.92	3.7	2.7	2.8	7.23	5.28	1.77	3.75
Merged-chr16-38536928-3	chr16	38536412	38537412	+	765.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153380, intron 6 of 10)	intron (NR_153380, intron 6 of 10)	13344.0	NR_153380	224143.0	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi|wsnp	protein O-glucosyltransferase 1	protein-coding	1.72	4.15	7.4	8.77	1.87	11.25	4.22	2.65	5.0
Merged-chr14-65380650-3	chr14	65380148	65381148	+	765.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	21972.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	30.32	16.13	12.02	26.31	21.46	16.08	14.79	8.4	6.25
Merged-chr11-6586827-2	chr11	6586330	6587330	+	765.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146014, intron 4 of 9)	ORR1G|LTR|ERVL-MaLR	19224.0	NM_001081652	192950.0	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	6.86	7.83	9.25	12.82	9.8	12.06	6.34	2.21	7.49
Merged-chr15-78239679-3	chr15	78239196	78240196	+	765.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5115.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	4.0	3.69	0.0	2.02	1.4	6.43	3.17	0.44	0.62
Merged-chr10-111724849-1	chr10	111724349	111725349	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130576.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	10.3	5.07	8.32	4.05	10.26	7.23	6.34	3.54	8.74
Merged-chr14-8255582-1	chr14	8255082	8256082	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053115, intron 4 of 14)	MER91B|DNA|hAT-Tip100	3257.0	NM_001161667	93732.0	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	5.72	2.76	1.85	1.35	0.93	0.0	0.0	2.65	2.5
Merged-chr4-65562636-1	chr4	65562136	65563136	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207109, intron 17 of 22)	intron (NM_207109, intron 17 of 22)	-42350.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	1.14	2.76	2.77	4.05	3.73	1.61	1.06	3.98	6.87
Merged-chr6-122824666-2	chr6	122824192	122825192	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4508.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	10.3	5.53	1.85	6.75	7.0	6.43	9.51	8.4	16.24
Merged-chr6-40479923-2	chr6	40479423	40480423	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212468, intron 6 of 6)	intron (NM_212468, intron 6 of 6)	8455.0	NM_001286663	381760.0	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	2.86	5.99	0.0	4.05	4.2	4.82	0.0	3.54	1.25
Merged-chr15-63650311-3	chr15	63649810	63650810	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158429.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	13.73	5.99	3.7	6.75	6.53	8.04	5.28	4.86	2.5
Merged-chr4-58723067-2	chr4	58722582	58723582	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62638.0	NM_146920	258922.0	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	5.15	3.69	5.55	2.02	2.8	5.63	4.22	2.21	2.5
Merged-chr7-73528581-2	chr7	73528065	73529065	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	13181.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	48.05	82.48	43.47	36.43	39.19	50.64	58.09	63.23	63.08
Merged-chr5-119240781-1	chr5	119240281	119241281	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40763.0	NR_046033	665194.0	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	0.57	1.84	1.85	3.37	4.2	12.06	2.11	0.0	2.5
Merged-chr13-37778918-2	chr13	37778423	37779423	+	765.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-47115.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	189.92	176.94	151.69	184.2	186.6	208.18	204.9	228.6	86.18
Merged-chr8-94182166-2	chr8	94181577	94182577	+	765.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	2988.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	14.87	6.91	1.85	10.12	7.0	8.04	9.51	3.98	6.25
Merged-chr11-110987267-2	chr11	110986777	110987777	+	765.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252207, intron 2 of 2)	intron (NM_001252207, intron 2 of 2)	-10210.0	NM_001252209	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	56.63	69.12	37.0	60.05	37.32	39.39	51.75	86.22	33.72
Merged-chr19-61229130-3	chr19	61228624	61229624	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009970)	promoter-TSS (NM_009970)	-706.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	50.34	42.39	27.75	53.98	45.25	27.33	54.92	49.08	30.6
Merged-chr19-3951635-3	chr19	3951147	3952147	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7161.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	9.15	11.52	9.25	7.42	8.4	29.74	28.52	15.03	3.75
Merged-chr15-93399822-3	chr15	93399312	93400312	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358749, intron 2 of 8)	T-rich|Low_complexity|Low_complexity	1348.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	32.61	28.11	26.82	15.52	13.06	8.84	29.57	34.93	23.11
Merged-chr10-57001534-3	chr10	57001035	57002035	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	484818.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	4.0	5.07	7.4	4.72	0.93	0.0	3.17	1.77	1.87
Merged-chr11-115105338-3	chr11	115104842	115105842	+	765.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	13911.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	28.03	29.03	18.5	6.07	5.13	6.43	27.46	23.43	5.0
Merged-chr3-88490863-2	chr3	88490379	88491379	+	765.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002011, intron 1 of 11)	intron (NM_001002011, intron 1 of 11)	2433.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	13.73	11.52	1.85	15.52	16.33	5.63	5.28	2.21	14.99
Merged-chr10-89453972-2	chr10	89453465	89454465	+	765.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163504)	TTS (NM_001163504)	-9998.0	NM_001033331	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	8.01	4.61	6.47	18.22	12.6	28.94	2.11	3.54	6.25
Merged-chr11-117308044-3	chr11	117307534	117308534	+	765.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-23681.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	28.03	26.73	46.25	29.01	14.93	23.31	24.29	14.15	6.25
Merged-chr19-10023433-3	chr19	10022931	10023931	+	765.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	5237.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	59.49	95.38	132.27	55.33	79.31	87.61	79.21	105.68	64.33
Merged-chr13-83655166-2	chr13	83654662	83655662	+	765.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347576, intron 8 of 10)	intron (NM_001347576, intron 8 of 10)	-66219.0	NR_152244	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	1.72	5.99	5.55	1.35	3.73	3.22	4.22	0.88	1.25
Merged-chr15-90322863-2	chr15	90322342	90323342	+	765.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30868.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	18.88	17.51	17.57	30.36	25.66	35.37	32.74	18.13	13.74
Merged-chr9-47647719-2	chr9	47647222	47648222	+	765.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	117370.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	18.31	11.52	11.1	22.27	11.2	20.9	11.62	15.48	6.25
Merged-chr6-117553574-2	chr6	117553064	117554064	+	765.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58329.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	4.0	2.3	1.85	6.07	2.8	1.61	4.22	6.63	5.0
Merged-chr16-50630647-2	chr16	50630158	50631158	+	765.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-39504.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	1.14	5.07	0.0	2.7	2.8	3.22	7.39	5.75	1.87
Merged-chr4-141618033-3	chr4	141617536	141618536	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013780)	TTS (NM_001013780)	597.0	NM_145987	213989.0	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	79.52	28.57	9.25	56.0	26.59	8.84	43.3	34.93	15.61
Merged-chr16-91362889-1	chr16	91362389	91363389	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9894.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	13.73	5.99	1.85	4.05	3.73	6.43	10.56	4.86	14.36
Merged-chr10-50894571-3	chr10	50894041	50895041	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1110.0	NM_011376	20464.0	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded family bHLH transcription factor 1	protein-coding	1.72	1.38	0.92	3.37	1.87	0.8	3.17	1.77	1.25
Merged-chr5-73564636-1	chr5	73564136	73565136	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	67785.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	9.15	3.69	0.0	8.1	1.87	3.22	3.17	0.44	2.5
Merged-chr12-81833241-1	chr12	81832741	81833741	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26789.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.29	1.84	1.85	2.7	0.93	3.22	2.11	0.0	2.5
Merged-chr6-120363275-3	chr6	120362767	120363767	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145997)	promoter-TSS (NM_145997)	-832.0	NM_145997	214899.0	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	219.1	310.11	164.64	155.19	215.06	182.46	200.68	238.33	154.26
Merged-chr19-41764931-1	chr19	41764431	41765431	+	765.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17970.0	NR_040320	100502871.0	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	3.43	3.69	5.55	6.07	7.0	3.22	25.35	19.01	25.61
Merged-chr5-99729069-1	chr5	99728569	99729569	+	765.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030692)	promoter-TSS (NR_030692)	-9.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.58	0.92	5.55	6.07	5.13	4.82	4.22	2.21	5.62
Merged-chr3-58655495-3	chr3	58654986	58655986	+	765.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3444.0	NR_004433	666680.0	Mm.422212	NR_004433		Gm8234	AU022133	spermine synthase pseudogene	pseudo	2.29	2.3	7.4	6.75	2.8	0.0	3.17	2.65	2.5
Merged-chr5-22549438-3	chr5	22548944	22549944	+	765.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102315)	promoter-TSS (NR_102315)	887.0	NM_011959	26429.0	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	45.76	65.43	40.7	64.1	72.78	70.73	63.37	75.17	46.22
Merged-chr18-57800419-3	chr18	57799942	57800942	+	765.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-8109.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	7.44	5.07	9.25	20.24	13.06	11.25	6.34	11.05	7.49
Merged-chr4-43741989-1	chr4	43741489	43742489	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9870.0	NR_040667	319973.0	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	32.04	31.33	22.2	83.66	66.71	101.28	31.69	30.07	26.23
Merged-chr9-108692827-2	chr9	108692334	108693334	+	765.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 1 of 10)	CpG	691.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	144.73	144.23	113.77	118.75	98.9	133.43	128.85	144.15	101.8
Merged-chr18-75369989-2	chr18	75369482	75370482	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	2617.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	17.16	25.34	22.2	25.64	27.52	34.56	49.64	42.01	33.72
Merged-chr9-116098740-2	chr9	116098260	116099260	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	76603.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	49.77	42.39	24.05	57.35	25.66	47.42	14.79	19.01	11.87
Merged-chr11-114973029-1	chr11	114972529	114973529	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	-12612.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	3.43	5.07	5.55	22.94	30.79	24.11	2.11	7.96	2.5
Merged-chr16-91484069-1	chr16	91483569	91484569	+	765.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-1146.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	45.19	54.37	48.1	48.58	36.39	78.77	52.81	41.12	39.35
Merged-chr15-93276439-2	chr15	93275967	93276967	+	765.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1288.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	24.03	35.02	21.27	20.24	21.93	40.19	27.46	23.88	26.23
Merged-chr9-75071343-4	chr9	75070866	75071866	+	765.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010864, exon 1 of 41)	5' UTR (NM_010864, exon 1 of 41)	160.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	4.58	1.84	4.62	9.45	3.27	0.0	5.28	1.33	0.0
Merged-chr6-127251873-3	chr6	127251341	127252341	+	765.227783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56126.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	9.72	7.83	12.02	8.77	2.8	7.23	19.01	1.33	2.5
Merged-chr9-88966280-3	chr9	88965766	88966766	+	765.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	9346.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	9.15	7.83	11.1	6.07	3.73	4.82	9.51	11.94	6.87
Merged-chr18-38228587-3	chr18	38228106	38229106	+	765.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18844.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	18.31	22.12	12.02	37.78	23.33	21.7	34.85	36.26	15.61
Merged-chr10-68176493-1	chr10	68175993	68176993	+	765.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	102233.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	6.29	4.15	8.32	6.75	6.53	4.82	2.11	1.33	5.0
Merged-chr4-148900930-3	chr4	148900302	148901302	+	765.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027195, intron 3 of 15)	CpG	51520.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	9.15	3.23	3.7	6.07	2.33	3.22	10.56	6.63	4.37
Merged-chr7-29303900-3	chr7	29303421	29304421	+	765.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013874)	promoter-TSS (NM_013874)	-84.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	3.43	1.38	1.85	4.72	0.93	0.0	3.17	3.54	1.25
Merged-chr19-53107086-2	chr19	53106603	53107603	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30851.0	NR_045320	78457.0	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	5.15	3.23	0.0	4.72	2.8	3.22	1.06	0.44	1.25
Merged-chr1-184606070-2	chr1	184605586	184606586	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48395.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	12.59	11.06	1.85	17.54	13.06	16.08	11.62	6.63	13.74
Merged-chr7-113505268-2	chr7	113504754	113505754	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8580.0	NM_001285831	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	3.43	6.91	3.7	3.37	4.2	9.65	3.17	0.44	5.0
Merged-chr11-117810153-2	chr11	117809651	117810651	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009304, intron 1 of 3)	CpG	484.0	NM_009304	20973.0	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	151.02	192.61	279.34	168.68	162.81	209.79	201.73	172.45	171.12
Merged-chr1-166154356-2	chr1	166153854	166154854	+	765.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360926)	TTS (NM_001360926)	24133.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	3.43	1.84	3.7	4.05	1.4	0.0	2.11	1.77	1.25
Merged-chr4-133931542-3	chr4	133931048	133932048	+	765.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	36443.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	9.15	5.07	1.85	8.77	7.0	8.04	3.17	1.77	2.5
Merged-chr2-101871370-3	chr2	101870866	101871866	+	765.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	11661.0	NM_001355625	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.0	2.3	3.7	2.7	1.87	1.61	5.28	4.86	8.74
Merged-chr9-41170160-2	chr9	41169657	41170657	+	765.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12095.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	2.86	1.84	0.0	9.45	4.67	4.82	5.28	0.44	5.0
Merged-chr7-38085943-4	chr7	38085488	38086488	+	765.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21502.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	5.15	2.76	9.25	1.35	1.87	6.43	8.45	0.0	5.0
Merged-chr2-22771559-3	chr2	22771050	22772050	+	765.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2777.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	17.16	6.45	10.17	5.4	4.2	4.02	8.45	4.42	6.25
Merged-chr5-21658820-3	chr5	21658310	21659310	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	12826.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	5.72	2.76	0.0	4.05	2.8	9.65	2.11	5.75	7.49
Merged-chr10-7888456-3	chr10	7887962	7888962	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52081.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	48.62	55.75	47.17	53.98	37.79	58.68	49.64	38.47	41.22
Merged-chr16-97523276-3	chr16	97522761	97523761	+	765.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12820.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	8.01	4.15	1.85	3.37	4.67	2.41	1.06	0.44	2.5
Merged-chr5-147073128-2	chr5	147072626	147073626	+	765.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	3446.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	82.95	85.71	51.8	60.72	52.72	69.93	5.28	4.42	11.24
Merged-chr19-32907172-4	chr19	32906706	32907706	+	765.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149629.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	36.61	41.93	21.27	41.16	29.86	36.17	48.58	49.08	29.35
Merged-chr6-97402734-2	chr6	97402243	97403243	+	765.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	56543.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	17.16	10.14	22.2	12.14	13.53	24.11	38.02	20.78	13.12
Merged-chr2-157130014-2	chr2	157129489	157130489	+	765.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	intron (NM_001139520, intron 1 of 16)	5233.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	117.27	141.0	60.12	124.15	127.82	91.63	120.41	164.04	68.7
Merged-chr19-12004870-1	chr19	12004370	12005370	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	31870.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	20.02	26.73	5.55	25.64	33.59	17.68	26.4	19.46	3.75
Merged-chr19-45064077-1	chr19	45063577	45064577	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11164.0	NM_001362398	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.57	0.92	1.85	1.35	0.93	1.61	2.11	1.77	1.25
Merged-chr14-87422494-1	chr14	87421994	87422994	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	5911.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	13.16	13.82	13.87	21.59	24.26	28.94	13.73	14.15	11.87
Merged-chr1-77827572-1	chr1	77827072	77828072	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-312484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.29	14.75	12.95	6.07	10.26	19.29	10.56	8.84	15.61
Merged-chr6-148444931-2	chr6	148444431	148445431	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347518)	promoter-TSS (NM_001347518)	-579.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	37.76	26.73	51.8	18.22	17.26	27.33	20.07	28.74	14.36
Merged-chr7-49794558-1	chr7	49794058	49795058	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133740, intron 8 of 15)	intron (NM_133740, intron 8 of 15)	16200.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	4.58	5.99	7.4	1.35	2.33	1.61	5.28	1.33	2.5
Merged-chr18-38573586-1	chr18	38573086	38574086	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27682.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	3.43	1.84	7.4	3.37	6.06	1.61	3.17	0.44	1.25
Merged-chr16-32332767-3	chr16	32332212	32333212	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177633, intron 1 of 10)	CpG	460.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	86.95	63.13	137.82	69.5	62.51	104.49	119.35	105.68	77.44
Merged-chr2-58752409-2	chr2	58751901	58752901	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-2783.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.58	3.69	3.7	6.75	5.6	3.22	4.22	0.88	3.75
Merged-chr7-110382501-2	chr7	110381999	110382999	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	RMER10B|LTR|ERVL	160796.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	21.17	17.51	53.65	24.29	19.13	35.37	50.7	42.01	18.11
Merged-chr2-150750366-2	chr2	150749888	150750888	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355068, intron 1 of 13)	intron (NM_001355068, intron 1 of 13)	1307.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	54.92	58.52	45.32	47.9	40.12	40.99	72.88	67.21	41.22
Merged-chr11-75767739-2	chr11	75767242	75768242	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007873)	TTS (NM_007873)	-28067.0	NR_136933	102641247.0	Mm.411386	NR_136932		Gm12339	-	predicted gene 12339	ncRNA	11.44	22.12	22.2	21.59	7.93	12.06	21.12	19.01	13.74
Merged-chr8-119830764-2	chr8	119830363	119831363	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	9716.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	33.75	22.58	25.9	39.13	21.46	39.39	31.69	27.41	13.12
Merged-chr11-103053387-1	chr11	103052887	103053887	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008707, intron 4 of 11)	B3|SINE|B2	24844.0	NM_008707	18107.0	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	6.29	6.91	0.0	15.52	15.39	25.72	12.67	8.4	9.99
Merged-chr10-13199413-2	chr10	13198912	13199912	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6275.0	NM_181470	353258.0	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	4.58	6.45	5.55	4.05	5.13	1.61	5.28	3.54	6.25
Merged-chr9-100503926-3	chr9	100503451	100504451	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	B1_Mm|SINE|Alu	2905.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	165.9	197.68	68.45	134.27	128.76	114.14	127.8	121.6	58.71
Merged-chr3-69128322-1	chr3	69127822	69128822	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1230.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	55.49	48.84	19.42	65.45	86.3	69.93	50.7	48.2	22.48
Merged-chr17-10722780-1	chr17	10722280	10723280	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	117411.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	8.01	3.23	1.85	13.49	7.93	5.63	8.45	3.54	3.12
Merged-chr9-116169221-1	chr9	116168721	116169721	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	6142.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	17.16	13.82	22.2	24.29	20.99	20.09	8.45	5.75	0.0
Merged-chr4-142078201-3	chr4	142077693	142078693	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-6105.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	131.0	97.69	89.72	105.93	111.03	90.02	199.62	164.04	76.82
Merged-chr7-142391256-1	chr7	142390756	142391756	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3386.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	96.68	123.03	162.79	57.35	61.11	113.33	101.39	89.76	84.31
Merged-chr8-110847501-1	chr8	110847001	110848001	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133953)	promoter-TSS (NM_133953)	477.0	NM_133973	102339.0	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	129.86	188.92	121.17	134.27	171.21	155.93	183.78	205.61	108.04
Merged-chr17-53582022-1	chr17	53581522	53582522	+	765.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-2104.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	10.3	11.52	19.42	12.82	16.33	11.25	29.57	25.2	14.99
Merged-chr13-73476391-1	chr13	73475891	73476891	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 1 of 13)	intron (NM_145376, intron 1 of 13)	9008.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	1.14	1.84	0.0	4.72	5.13	1.61	4.22	1.77	6.25
Merged-chr16-36920629-3	chr16	36920133	36921133	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030035, intron 14 of 21)	intron (NM_030035, intron 14 of 21)	-14350.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	8.01	3.69	3.7	12.82	7.46	14.47	3.17	5.75	4.37
Merged-chr7-63907310-1	chr7	63906810	63907810	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	B1_Mur3|SINE|Alu	-9547.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	44.62	57.14	50.87	45.88	47.12	56.27	66.54	46.87	56.21
Merged-chr8-46742753-1	chr8	46742253	46743253	+	765.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	3008.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	53.77	72.8	64.75	73.54	67.64	76.36	103.51	99.93	48.71
Merged-chr3-148867776-1	chr3	148867276	148868276	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	86859.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.43	1.38	0.0	3.37	0.93	4.82	5.28	5.31	6.87
Merged-chr13-37130798-1	chr13	37130298	37131298	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80554.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	10.3	5.53	0.0	9.45	12.6	9.65	6.34	5.31	3.75
Merged-chr12-73324910-2	chr12	73324417	73325417	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	38069.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	8.01	7.83	16.65	8.77	7.93	11.25	14.79	4.86	13.12
Merged-chr13-73426015-2	chr13	73425507	73426507	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41376.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	3.43	2.76	0.0	6.07	4.2	6.43	4.22	1.33	0.0
Merged-chr10-107990011-1	chr10	107989511	107990511	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43366.0	NR_131147	628877.0	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	4.0	2.76	5.55	4.05	5.13	9.65	5.28	1.33	3.12
Merged-chr5-140641069-3	chr5	140640569	140641569	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	7962.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	68.65	61.75	36.07	68.82	73.24	69.93	65.48	83.13	39.35
Merged-chr11-69260950-2	chr11	69260449	69261449	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23927.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	96.68	81.1	56.42	118.75	122.23	90.83	115.12	152.55	62.45
Merged-chr4-83262386-1	chr4	83261886	83262886	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 4 of 19)	ID_B1|SINE|B4	61803.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	10.3	6.45	7.4	6.07	4.67	0.0	3.17	4.42	1.87
Merged-chr4-156109239-3	chr4	156108749	156109749	+	765.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145557)	promoter-TSS (NM_145557)	-749.0	NM_145557	230996.0	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	78.94	106.9	70.3	37.11	59.25	86.81	139.42	171.56	97.43
Merged-chr11-43492888-2	chr11	43492382	43493382	+	765.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18576.0	NM_026979	69183.0	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	1.14	1.84	1.85	6.75	1.87	4.02	2.11	2.65	4.37
Merged-chr17-26540045-3	chr17	26539553	26540553	+	764.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-21459.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	18.88	8.29	0.0	20.24	11.2	0.0	7.39	11.05	3.75
Merged-chr11-114926966-3	chr11	114926469	114927469	+	764.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347651, intron 2 of 3)	intron (NM_001347651, intron 2 of 3)	7417.0	NM_001347651	217304.0	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	135.0	87.09	87.87	197.02	74.64	136.64	128.85	130.88	93.68
Merged-chrX-48202147-3	chrX	48201661	48202661	+	764.9277950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172465, intron 2 of 9)	intron (NM_172465, intron 2 of 9)	6541.0	NM_172465	208884.0	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	5.72	13.36	3.7	10.8	20.99	20.9	13.73	10.61	13.74
Merged-chr11-69033855-4	chr11	69033401	69034401	+	764.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281465, intron 17 of 22)	intron (NM_001281465, intron 17 of 22)	-11736.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	78.37	67.74	51.8	85.69	77.44	71.54	102.45	83.57	68.07
Merged-chr3-52029860-2	chr3	52029343	52030343	+	764.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75163.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	23.45	8.75	9.25	22.27	9.8	12.06	20.07	7.07	8.74
Merged-chr12-105963261-3	chr12	105962777	105963777	+	764.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46986.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	9.15	11.06	12.95	4.72	4.2	6.43	16.9	17.69	7.49
Merged-chr6-125030736-3	chr6	125030239	125031239	+	764.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130997, intron 1 of 3)	intron (NR_130997, intron 1 of 3)	-9109.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	14.3	4.61	1.85	5.4	2.8	10.45	9.51	5.31	11.24
Merged-chr9-13560188-2	chr9	13559687	13560687	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59802.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	5.72	8.75	11.1	9.45	7.46	11.25	6.34	5.31	9.99
Merged-chr8-120332843-2	chr8	120332336	120333336	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104606.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	1.72	0.92	1.85	4.05	2.8	3.22	4.22	1.77	0.0
Merged-chr6-108447775-2	chr6	108447276	108448276	+	764.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-41967.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	117.27	104.6	59.2	174.08	124.56	103.69	90.83	91.53	32.48
Merged-chr19-24981522-3	chr19	24981022	24982022	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18007.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	24.03	13.82	12.02	34.41	27.06	12.86	22.18	22.11	3.75
Merged-chr10-128790954-3	chr10	128790463	128791463	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164197)	promoter-TSS (NM_001164197)	8.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	45.76	30.87	37.0	37.78	41.99	40.19	32.74	33.6	21.23
Merged-chr9-86479252-3	chr9	86478741	86479741	+	764.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177208, intron 1 of 38)	intron (NM_177208, intron 1 of 38)	12087.0	NM_177208	320615.0	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	105.83	113.81	54.57	121.45	59.71	77.97	89.78	128.67	79.32
Merged-chr10-88504657-2	chr10	88504145	88505145	+	764.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146690)	promoter-TSS (NM_001146690)	-675.0	NM_001146690	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	39.47	31.79	17.57	49.25	36.85	30.54	40.14	38.91	23.73
Merged-chr12-3424138-5	chr12	3423633	3424633	+	764.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	ID4|SINE|ID	2614.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	26.31	34.56	49.02	24.29	24.72	40.99	49.64	32.28	41.22
Merged-chr8-126881236-2	chr8	126880742	126881742	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	32222.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	9.72	13.82	19.42	35.76	14.93	19.29	15.84	11.94	9.99
Merged-chr6-145750710-1	chr6	145750210	145751210	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57673.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	1.72	2.76	2.77	4.72	4.67	4.82	3.17	3.1	1.87
Merged-chr18-57745307-2	chr18	57744805	57745805	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34690.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	10.3	10.6	10.17	8.77	11.2	14.47	38.02	20.78	26.23
Merged-chr16-32876908-1	chr16	32876408	32877408	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027226)	promoter-TSS (NM_027226)	-876.0	NM_001356387	69823.0	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	38.33	42.39	39.77	64.77	46.65	32.96	43.3	30.51	17.49
Merged-chr14-79533888-2	chr14	79533387	79534387	+	764.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	18213.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	167.04	171.87	172.04	132.24	103.56	109.32	140.47	163.6	113.04
Merged-chr13-41572200-3	chr13	41571708	41572708	+	764.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34008.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.0	4.15	0.0	6.75	3.27	1.61	4.22	1.33	1.25
Merged-chr3-43218949-2	chr3	43218461	43219461	+	764.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	1476343.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	5.15	1.84	0.0	5.4	1.4	4.02	4.22	3.1	1.25
Merged-chr5-134507509-3	chr5	134507001	134508001	+	764.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009990, intron 8 of 16)	B3A|SINE|B2	44933.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	8.01	3.23	9.25	2.02	2.8	1.61	5.28	3.1	1.87
Merged-chr16-90070755-3	chr16	90070253	90071253	+	764.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71484.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	11.44	10.14	7.4	6.07	3.27	9.65	11.62	5.31	13.12
Merged-chr4-101174548-3	chr4	101174054	101175054	+	764.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 9 of 24)	intron (NM_146145, intron 9 of 24)	90728.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	38.9	27.65	31.45	27.66	17.73	34.56	26.4	23.88	26.23
Merged-chr11-89090584-1	chr11	89090084	89091084	+	764.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	intron (NM_001033266, intron 3 of 3)	16743.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	2.29	3.69	0.0	0.67	0.0	0.0	60.2	52.62	55.58
Merged-chr17-33637690-3	chr17	33637191	33638191	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028279)	promoter-TSS (NR_028279)	-365.0	NM_001002842	378460.0	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	36.61	53.45	43.47	34.41	17.73	25.72	60.2	32.28	63.08
Merged-chr8-121104244-3	chr8	121103744	121104744	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172761, intron 4 of 7)	intron (NM_172761, intron 4 of 7)	4135.0	NM_172761	234814.0	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	2.86	7.37	4.62	2.02	5.13	2.41	3.17	1.77	0.0
Merged-chr3-90251168-3	chr3	90250701	90251701	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013901, intron 3 of 3)	intron (NM_013901, intron 3 of 3)	-2657.0	NR_151631	74343.0	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2	CREB regulated transcription coactivator 2	protein-coding	73.79	52.07	51.8	47.23	40.12	55.46	81.33	61.9	65.58
Merged-chr7-78791686-3	chr7	78791169	78792169	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153793, intron 4 of 5)	intron (NR_153793, intron 4 of 5)	8538.0	NM_001360702	67994.0	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873|MRP-S11|S11mt	mitochondrial ribosomal protein S11	protein-coding	4.58	1.84	0.92	2.02	2.8	3.22	1.06	0.44	1.25
Merged-chr19-6665458-3	chr19	6664931	6665931	+	764.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122361.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	17.16	8.75	7.4	16.87	4.67	12.06	12.67	5.31	7.49
Merged-chr12-33010194-1	chr12	33009694	33010694	+	764.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56008.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.0	3.69	0.92	2.02	4.67	0.0	1.06	0.0	2.5
Merged-chr1-170937258-2	chr1	170936753	170937753	+	764.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-9670.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	12.59	10.6	15.72	30.36	17.73	16.88	11.62	11.05	16.24
Merged-chr2-27711019-2	chr2	27710428	27711428	+	764.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	345.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	37.18	56.68	55.5	37.11	45.72	64.3	38.02	40.24	41.22
Merged-chr13-81051713-3	chr13	81051216	81052216	+	764.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	87642.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	22.31	24.42	26.82	22.94	24.26	22.51	17.96	15.03	10.62
Merged-chr6-83774965-2	chr6	83774474	83775474	+	764.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009357, intron 2 of 5)	intron (NM_009357, intron 2 of 5)	838.0	NM_009357	21766.0	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	17.73	9.22	12.02	20.92	14.93	15.27	11.62	11.5	14.99
Merged-chr8-95419292-2	chr8	95418793	95419793	+	764.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008187)	TTS (NM_008187)	15576.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	6.86	5.99	1.85	2.7	5.13	4.02	1.06	3.54	5.62
Merged-chr2-13538897-2	chr2	13538394	13539394	+	764.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010067, intron 1 of 10)	intron (NM_010067, intron 1 of 10)	5770.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	105.26	143.76	100.82	89.74	121.76	94.04	135.19	137.96	67.45
Merged-chr4-128734447-2	chr4	128733944	128734944	+	764.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	6873.0	NM_001195083	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	124.71	134.55	98.97	101.21	99.83	89.22	67.6	88.88	43.72
Merged-chr5-23617114-2	chr5	23616604	23617604	+	764.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009274)	promoter-TSS (NM_009274)	-533.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	104.11	165.42	88.8	137.64	189.87	142.27	182.72	181.29	98.68
Merged-chr10-21502543-2	chr10	21502027	21503027	+	764.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90618.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	6.29	5.07	7.4	9.45	2.33	4.02	7.39	1.33	1.25
Merged-chr14-46808124-3	chr14	46807639	46808639	+	764.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022023)	TTS (NM_022023)	14103.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	16.02	6.45	3.7	16.87	9.33	7.23	12.67	15.92	1.25
Merged-chr9-114978466-3	chr9	114977970	114978970	+	764.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-44483.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	5.15	1.38	1.85	6.07	2.33	0.0	8.45	1.33	0.0
Merged-chr7-120865276-2	chr7	120864748	120865748	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	intron (NM_001267710, intron 2 of 17)	14059.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	9.15	7.37	6.47	11.47	4.2	3.22	4.22	4.42	5.0
Merged-chr13-54219008-2	chr13	54218521	54219521	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153432, intron 2 of 3)	intron (NR_153432, intron 2 of 3)	26888.0	NR_153432	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	32.61	16.59	8.32	24.96	8.4	7.23	33.8	19.01	13.12
Merged-chr1-156010216-1	chr1	156009716	156010716	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 6 of 6)	MTB|LTR|ERVL-MaLR	24601.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	5.72	11.98	12.95	4.72	4.67	8.04	26.4	41.12	21.23
Merged-chr6-57851335-3	chr6	57850820	57851820	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-6863.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	25.17	23.5	17.57	24.96	11.66	38.58	23.24	8.84	22.48
Merged-chr11-121057007-3	chr11	121056452	121057452	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026907, intron 2 of 4)	MT2A|LTR|ERVL	6617.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	10.87	7.37	0.0	8.1	7.46	9.65	9.51	7.96	3.75
Merged-chr1-59634161-1	chr1	59633661	59634661	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357842, exon 18 of 19)	exon (NM_001357842, exon 18 of 19)	36673.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	12.59	5.99	9.25	10.12	3.27	15.27	7.39	3.54	5.0
Merged-chr8-94205926-3	chr8	94205407	94206407	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8657.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	1.14	1.38	0.0	5.4	0.47	1.61	4.22	2.65	1.25
Merged-chr15-96722468-2	chr15	96721965	96722965	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_Mus|LTR|ERVK	-22737.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.86	2.3	3.7	2.7	7.46	4.82	2.11	6.63	4.37
Merged-chr1-143997519-2	chr1	143997016	143998016	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6633.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	7.44	8.29	10.17	8.77	6.06	9.65	6.34	6.63	8.74
Merged-chr6-82740417-1	chr6	82739917	82740917	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 7 of 17)	intron (NM_013820, intron 7 of 17)	34037.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	13.16	6.45	0.0	6.75	5.6	1.61	13.73	7.07	9.99
Merged-chr10-67378019-1	chr10	67377519	67378519	+	764.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92738.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.43	0.0	1.85	1.35	2.8	0.0	5.28	2.21	1.25
Merged-chr9-75049297-2	chr9	75048809	75049809	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357880, intron 2 of 3)	intron (NM_001357880, intron 2 of 3)	11577.0	NM_021548	59046.0	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	10.3	5.99	10.17	5.4	4.2	5.63	7.39	0.88	3.75
Merged-chr5-62842987-2	chr5	62842487	62843487	+	764.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001170705, exon 6 of 9)	exon (NM_001170705, exon 6 of 9)	29164.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	36.04	28.11	16.65	37.78	27.52	36.97	43.3	36.7	25.61
Merged-chr17-52712484-1	chr17	52711984	52712984	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031811, intron 1 of 15)	intron (NM_001031811, intron 1 of 15)	109775.0	NM_001031811	211468.0	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	4.58	1.38	0.0	5.4	2.33	10.45	2.11	7.52	5.0
Merged-chr15-57762367-2	chr15	57761869	57762869	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	67702.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	14.87	11.98	4.62	10.8	8.86	6.43	34.85	20.78	25.61
Merged-chr1-128743623-1	chr1	128743123	128744123	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-151324.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	15.45	11.52	5.55	16.19	9.33	5.63	3.17	1.33	5.62
Merged-chr9-9684225-2	chr9	9683729	9684729	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 17 of 20)	intron (NM_001033359, intron 17 of 20)	-210202.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	3.43	1.84	0.92	4.05	1.87	3.22	0.0	2.65	2.5
Merged-chr6-117438319-2	chr6	117437804	117438804	+	764.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56931.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	3.43	2.76	1.85	2.7	0.93	8.04	2.11	1.77	1.87
Merged-chr2-84634337-3	chr2	84633879	84634879	+	764.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D7|SINE|Alu	15101.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	73.22	78.33	40.7	68.82	39.19	77.16	78.16	54.83	41.84
Merged-chr13-97239729-3	chr13	97239251	97240251	+	764.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1354.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	9.72	5.53	11.1	10.12	8.86	24.11	7.39	11.5	6.25
Merged-chr3-144628855-3	chr3	144628352	144629352	+	764.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58425.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	14.3	8.29	3.7	23.62	16.79	19.29	1.06	4.86	8.12
Merged-chr1-165769271-3	chr1	165768747	165769747	+	764.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	5489.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	71.51	63.59	52.72	87.04	90.5	86.81	95.06	96.83	51.21
Merged-chr8-46936239-3	chr8	46935736	46936736	+	764.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50651.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	66.93	71.42	48.1	67.47	64.38	67.52	59.15	64.56	48.71
Merged-chr3-88771577-3	chr3	88771102	88772102	+	764.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018804, intron 1 of 3)	intron (NM_018804, intron 1 of 3)	997.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	96.68	97.69	36.07	101.88	102.17	53.85	80.27	68.54	12.49
Merged-chr11-43451485-2	chr11	43450986	43451986	+	764.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	17755.0	NM_198936	193116.0	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	4.58	2.76	1.85	8.1	1.87	1.61	4.22	1.33	3.75
Merged-chr2-168570144-2	chr2	168569658	168570658	+	764.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291173, intron 1 of 8)	intron (NM_001291173, intron 1 of 8)	20207.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	9.15	3.23	12.95	6.07	14.46	16.08	7.39	1.77	0.0
Merged-chr12-29713491-2	chr12	29712991	29713991	+	764.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-27046.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	9.15	16.13	10.17	16.87	19.59	11.25	63.37	45.54	42.47
Merged-chr4-99270160-2	chr4	99269651	99270651	+	764.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	76004.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	3.43	7.37	3.7	2.7	2.8	0.0	16.9	6.63	3.75
Merged-chr7-64404191-1	chr7	64403691	64404691	+	764.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028626, intron 2 of 2)	intron (NM_028626, intron 2 of 2)	11569.0	NM_001355124	73724.0	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	5.72	5.99	11.1	9.45	12.13	10.45	5.28	6.19	2.5
Merged-chr6-8001268-1	chr6	8000768	8001768	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 33 of 34)	intron (NM_001037865, intron 33 of 34)	156044.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	14.87	12.44	1.85	6.75	6.53	3.22	3.17	1.77	2.5
Merged-chr9-64143363-3	chr9	64142860	64143860	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026507, intron 17 of 18)	MTE2a|LTR|ERVL-MaLR	26213.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	20.59	19.81	24.97	17.54	18.19	32.15	19.01	19.9	24.98
Merged-chr5-33443233-1	chr5	33442733	33443733	+	764.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9143.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	5.15	3.23	1.85	1.35	0.93	1.61	1.06	1.33	0.0
Merged-chr11-59633259-1	chr11	59632759	59633759	+	764.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	20293.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	5.15	3.69	2.77	3.37	3.73	8.04	4.22	0.44	2.5
Merged-chr4-44182595-3	chr4	44182082	44183082	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	14.87	7.37	16.65	7.42	2.8	7.23	8.45	3.54	8.12
Merged-chr16-75593931-3	chr16	75593392	75594392	+	764.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198302, intron 1 of 4)	intron (NM_198302, intron 1 of 4)	1001.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	5.15	3.23	0.0	4.72	5.6	4.82	4.22	3.98	5.62
Merged-chr11-76482820-3	chr11	76482318	76483318	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 2 of 21)	intron (NM_001346670, intron 2 of 21)	11677.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	143.01	166.8	128.57	155.86	150.22	158.35	146.81	176.42	106.79
Merged-chr3-9250709-3	chr3	9250218	9251218	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177660, exon 1 of 6)	5' UTR (NM_177660, exon 1 of 6)	151.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	87.52	22.12	33.3	130.22	38.72	23.31	46.47	15.03	6.25
Merged-chr2-92056174-3	chr2	92055663	92056663	+	764.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31993.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	40.62	29.03	12.02	34.41	40.59	8.04	20.07	26.09	17.49
Merged-chr15-59392091-2	chr15	59391619	59392619	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	17921.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	37.18	47.46	50.87	51.28	40.59	40.99	52.81	42.01	22.48
Merged-chr3-9865035-3	chr3	9864553	9865553	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-31374.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	17.16	4.61	0.0	9.45	8.4	1.61	6.34	2.21	5.0
Merged-chr15-81027846-2	chr15	81027357	81028357	+	764.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	50092.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	6.86	5.99	1.85	9.45	5.6	16.08	1.06	0.88	3.75
Merged-chr2-73487804-2	chr2	73487304	73488304	+	764.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-2051.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	44.62	43.31	28.67	61.4	47.12	66.71	42.25	45.54	34.97
Merged-chr17-3079408-2	chr17	3078885	3079885	+	764.224976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003519, exon 3 of 8)	non-coding (NR_003519, exon 3 of 8)	4798.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	4.58	4.15	12.95	6.75	4.67	7.23	2.11	0.88	8.74
Merged-chr4-11489230-3	chr4	11488732	11489732	+	764.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081183, intron 1 of 24)	intron (NM_001081183, intron 1 of 24)	3274.0	NM_001347055	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	21.17	17.05	22.2	10.8	5.13	10.45	14.79	19.46	13.74
Merged-chr6-28319280-3	chr6	28318759	28319759	+	764.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57658.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	10.3	12.44	1.85	8.77	9.33	14.47	13.73	6.63	38.72
Merged-chr11-54626351-3	chr11	54625840	54626840	+	764.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 10 of 28)	intron (NM_001252494, intron 10 of 28)	30194.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	80.66	193.07	83.25	114.03	113.36	91.63	124.63	149.01	98.68
Merged-chr7-43283359-3	chr7	43282859	43283859	+	764.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29941.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	6.86	5.07	0.0	6.07	4.67	2.41	9.51	5.31	3.75
Merged-chr12-111165305-3	chr12	111164797	111165797	+	764.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130987, intron 2 of 3)	intron (NR_130987, intron 2 of 3)	-1073.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	112.69	96.76	55.5	78.27	47.58	65.11	79.21	65.88	17.49
Merged-chr19-32952578-2	chr19	32952073	32953073	+	764.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	194996.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	16.02	20.74	11.1	8.1	9.8	36.97	17.96	13.27	9.99
Merged-chr10-24142947-3	chr10	24142478	24143478	+	764.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6311.0	NM_001358563	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	9.72	5.53	4.62	14.84	8.4	4.82	9.51	4.42	1.25
Merged-chr17-34556432-2	chr17	34555914	34556914	+	764.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7881.0	NM_010929	18132.0	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	23.45	16.59	16.65	64.77	55.51	28.13	54.92	33.16	16.24
Merged-chr2-30135425-2	chr2	30134923	30135923	+	764.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 2 of 11)	intron (NM_146252, intron 2 of 11)	1677.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	59.49	58.52	84.17	76.24	44.32	75.56	94.0	79.15	40.59
Merged-chr7-127026277-5	chr7	127025662	127026662	+	764.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010772, intron 1 of 4)	intron (NM_010772, intron 1 of 4)	317.0	NM_010772	17188.0	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	119.56	116.12	155.39	126.17	164.68	162.37	137.3	138.4	72.45
Merged-chr3-121841100-3	chr3	121840597	121841597	+	764.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR18A_MM|LTR|ERVK	-25795.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	44.62	18.43	25.9	39.81	8.86	29.74	81.33	41.12	36.85
Merged-chr15-34541182-3	chr15	34540668	34541668	+	764.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45857.0	NM_152894	67724.0	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.57	3.69	0.0	4.72	0.93	1.61	3.17	2.65	3.75
Merged-chr7-78890815-3	chr7	78890294	78891294	+	764.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2517.0	NR_029826	723884.0		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	1.14	6.91	7.4	2.7	2.8	1.61	3.17	0.44	3.75
Merged-chr5-8081356-3	chr5	8080856	8081856	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310439, intron 29 of 29)	intron (NM_001310439, intron 29 of 29)	24814.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	9.72	5.99	3.7	14.17	6.53	4.82	3.17	1.33	2.5
Merged-chr17-51478031-1	chr17	51477531	51478531	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	-29762.0	NR_046166	328837.0	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	29.75	23.5	27.75	37.78	27.99	19.29	45.42	29.18	19.36
Merged-chr15-58890689-1	chr15	58890189	58891189	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175151, exon 12 of 12)	3' UTR (NM_175151, exon 12 of 12)	1460.0	NM_175226	75841.0	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	69.79	75.57	46.25	62.75	39.19	50.64	58.09	69.86	38.72
Merged-chr11-4083557-1	chr11	4083057	4084057	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11874.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	6.29	4.61	0.92	2.7	2.33	6.43	3.17	1.33	2.5
Merged-chr2-157371517-1	chr2	157371017	157372017	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	ID_B1|SINE|B4	3923.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	83.52	61.75	74.0	76.92	48.52	89.22	89.78	80.92	44.97
Merged-chr6-143220760-1	chr6	143220260	143221260	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	45.19	50.23	24.05	59.38	45.72	30.54	45.42	60.58	19.36
Merged-chr4-35034866-1	chr4	35034366	35035366	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-117189.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	1.72	1.84	1.85	2.02	2.33	1.61	1.06	0.88	5.0
Merged-chr14-58319394-1	chr14	58318894	58319894	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	246708.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	14.87	15.21	5.55	9.45	5.13	12.06	9.51	8.4	11.24
Merged-chr7-138827974-1	chr7	138827474	138828474	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18293.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	4.0	2.76	4.62	1.35	0.93	0.0	4.22	0.44	2.5
Merged-chr18-83932702-1	chr18	83932202	83933202	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153860.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	9.72	11.98	5.55	15.52	7.93	5.63	7.39	5.31	9.37
Merged-chr17-5668446-1	chr17	5667946	5668946	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 2 of 8)	MTB|LTR|ERVL-MaLR	-130211.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	4.0	2.3	1.85	8.1	4.2	5.63	3.17	1.77	5.62
Merged-chr2-73572608-2	chr2	73572111	73573111	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007389, intron 4 of 8)	intron (NM_007389, intron 4 of 8)	7727.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.57	1.38	0.0	6.75	1.4	0.8	1.06	0.44	2.5
Merged-chr13-118715229-1	chr13	118714729	118715729	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008002, exon 1 of 3)	5' UTR (NM_008002, exon 1 of 3)	530.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	5.72	2.3	1.85	5.4	0.93	4.82	4.22	0.88	2.5
Merged-chr6-141048455-1	chr6	141047955	141048955	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-200814.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	2.29	1.84	3.7	2.02	6.53	1.61	1.06	3.1	3.12
Merged-chr14-121598853-1	chr14	121598353	121599353	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347596, intron 34 of 52)	intron (NM_001347596, intron 34 of 52)	-93599.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	14.87	17.51	0.92	14.17	11.66	7.23	7.39	5.31	8.74
Merged-chr7-66136437-1	chr7	66135937	66136937	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	26922.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	85.81	168.65	118.39	107.95	88.64	133.43	138.36	126.9	106.79
Merged-chr3-149323432-1	chr3	149322932	149323932	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48695.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	2.29	6.45	0.0	6.07	3.27	3.22	3.17	3.1	6.25
Merged-chr2-29054103-1	chr2	29053603	29054603	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	963.0	NM_001166705	329375.0	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	18.31	18.89	21.27	14.17	7.93	5.63	25.35	20.78	21.86
Merged-chr11-76605333-1	chr11	76604833	76605833	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-27594.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	74.94	80.18	58.27	67.47	62.98	51.44	94.0	115.85	45.59
Merged-chr6-143316008-1	chr6	143315508	143316508	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70120.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	2.29	7.83	0.0	6.07	2.33	1.61	2.11	3.54	10.62
Merged-chr5-109552316-2	chr5	109551904	109552904	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6589.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	2.86	5.99	4.62	5.4	0.93	5.63	9.51	2.21	7.49
Merged-chr13-101743482-1	chr13	101742982	101743982	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	B4|SINE|B4	24735.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	70.93	56.68	69.37	52.63	41.05	45.82	64.43	53.94	41.22
Merged-chr10-8520696-3	chr10	8520193	8521193	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1868.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	11.44	9.22	7.4	8.77	3.27	14.47	3.17	3.1	3.75
Merged-chr3-52029359-1	chr3	52028859	52029859	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	75647.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	9.15	7.83	5.55	17.54	5.13	4.82	14.79	1.77	5.0
Merged-chr12-3854740-1	chr12	3854240	3855240	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	7504.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	46.91	41.47	55.5	28.34	37.79	67.52	40.14	51.29	39.97
Merged-chr3-127294985-1	chr3	127294485	127295485	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	114073.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	6.29	4.15	0.0	2.02	1.4	9.65	13.73	19.9	8.12
Merged-chr11-19021489-1	chr11	19020989	19021989	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2520.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	3.43	1.84	1.85	9.45	3.27	4.02	3.17	2.65	2.5
Merged-chr3-89831391-1	chr3	89830891	89831891	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172530)	promoter-TSS (NM_172530)	21.0	NM_172530	214547.0	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	8.01	7.83	7.4	8.1	8.86	12.06	20.07	9.29	8.74
Merged-chr9-72467730-1	chr9	72467230	72468230	+	764.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009359, intron 10 of 11)	intron (NM_009359, intron 10 of 11)	24229.0	NM_009359	21778.0	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	10.87	18.43	12.95	8.77	12.6	8.04	34.85	30.95	23.73
Merged-chr19-6275307-3	chr19	6274818	6275818	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1578.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	70.36	46.54	33.3	54.65	23.33	45.01	30.63	38.03	26.23
Merged-chr3-107036103-3	chr3	107035624	107036624	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008418)	promoter-TSS (NM_008418)	-38.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	6.29	3.69	0.0	5.4	6.06	6.43	5.28	3.1	5.0
Merged-chr5-16470506-1	chr5	16470006	16471006	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82989.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	107.55	115.2	34.22	89.74	77.44	49.83	64.43	69.86	64.33
Merged-chr17-84285202-1	chr17	84284702	84285702	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-97255.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	26.31	25.8	14.8	45.21	35.92	33.76	46.47	35.37	16.24
Merged-chr17-35264030-1	chr17	35263530	35264530	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010380, exon 3 of 8)	exon (NM_010380, exon 3 of 8)	907.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	113.84	87.55	44.4	103.91	76.04	38.58	148.92	153.43	99.3
Merged-chr9-113805160-1	chr9	113804660	113805660	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	-7426.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	30.32	17.05	16.65	24.96	14.93	14.47	24.29	12.82	16.24
Merged-chr19-47508133-2	chr19	47507587	47508587	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 8 of 9)	intron (NM_175360, intron 8 of 9)	-4895.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	15.45	11.98	18.5	20.24	14.0	19.29	13.73	5.31	5.0
Merged-chr9-78150007-3	chr9	78149509	78150509	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163780, intron 5 of 13)	intron (NM_001163780, intron 5 of 13)	-25905.0	NR_040401	320295.0	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	5.15	4.61	3.7	5.4	4.67	0.0	13.73	8.84	1.87
Merged-chr7-90024400-1	chr7	90023900	90024900	+	764.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4759.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	33.75	48.84	44.4	65.45	48.98	65.91	34.85	37.14	54.96
Merged-chr13-58127430-2	chr13	58126934	58127934	+	764.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029872, exon 1 of 1)	exon (NM_029872, exon 1 of 1)	1122.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	105.83	136.39	140.59	98.51	109.63	102.88	113.01	82.69	89.31
Merged-chr12-13358988-3	chr12	13358509	13359509	+	763.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027706, intron 23 of 51)	intron (NM_027706, intron 23 of 51)	89882.0	NM_027706	71169.0	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	12.59	3.23	7.4	7.42	5.13	4.82	3.17	2.21	5.0
Merged-chr17-37050105-3	chr17	37049612	37050612	+	763.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019439, intron 5 of 22)	intron (NM_019439, intron 5 of 22)	4146.0	NM_019439	54393.0	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	25.74	20.74	23.12	8.77	7.93	7.23	2.11	0.44	2.5
Merged-chr12-95738347-3	chr12	95737843	95738843	+	763.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	46117.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	11.44	5.53	12.02	6.07	10.26	3.22	5.28	7.52	13.74
Merged-chr7-44836140-3	chr7	44835643	44836643	+	763.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010215)	promoter-TSS (NM_010215)	-145.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	46.34	35.94	40.7	49.25	21.46	46.62	55.98	34.49	30.6
Merged-chr3-104518625-2	chr3	104518116	104519116	+	763.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6698.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	9.15	4.15	18.5	16.19	7.93	6.43	6.34	2.21	1.25
Merged-chr11-19024665-2	chr11	19024162	19025162	+	763.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5693.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.58	5.53	0.0	4.72	5.6	0.0	5.28	3.1	2.5
Merged-chr9-31130085-3	chr9	31129596	31130596	+	763.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	1703.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	6.29	7.37	0.0	7.42	4.2	4.82	5.28	2.21	6.25
Merged-chr6-47175788-3	chr6	47175299	47176299	+	763.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68597.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	32.04	25.34	24.97	56.0	29.39	40.99	19.01	15.92	9.37
Merged-chr16-4723493-2	chr16	4722986	4723986	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2875.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	101.83	75.11	81.4	95.81	57.38	133.43	107.73	119.39	71.2
Merged-chr6-120056342-2	chr6	120055836	120056836	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17681.0	NM_001185021	232341.0	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	5.72	4.15	3.7	4.72	7.0	0.0	6.34	6.63	2.5
Merged-chr6-37592540-2	chr6	37592050	37593050	+	763.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62377.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	9.72	14.28	1.85	17.54	15.86	6.43	5.28	10.61	9.99
Merged-chr7-43310620-2	chr7	43310116	43311116	+	763.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027264, intron 2 of 4)	intron (NM_027264, intron 2 of 4)	2684.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	9.15	11.98	16.65	16.19	12.6	18.49	20.07	6.63	18.11
Merged-chr11-3289383-3	chr11	3288912	3289912	+	763.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045108, intron 1 of 5)	CpG	281.0	NR_045109	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	18.88	13.82	23.12	18.89	15.86	28.94	23.24	8.84	27.48
Merged-chr18-82840519-3	chr18	82840010	82841010	+	763.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-15387.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	6.29	1.84	2.77	3.37	3.27	6.43	2.11	3.54	0.0
Merged-chr19-10177298-2	chr19	10176786	10177786	+	763.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-5602.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	9.15	5.99	3.7	13.49	10.26	14.47	11.62	3.54	5.62
Merged-chr18-24215082-3	chr18	24214570	24215570	+	763.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	L1MDa|LINE|L1	9076.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	21.17	41.47	17.57	36.43	42.45	30.54	31.69	38.03	44.97
Merged-chr1-165679777-1	chr1	165679277	165680277	+	763.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	28317.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	115.55	59.9	46.25	130.9	49.45	113.33	58.09	45.1	33.72
Merged-chr11-115696783-2	chr11	115696274	115697274	+	763.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	2760.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	116.13	135.01	96.2	119.43	80.71	83.59	166.88	183.5	84.31
Merged-chr1-184808102-5	chr1	184807690	184808690	+	763.723328	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290273, intron 1 of 6)	MTD|LTR|ERVL-MaLR	3110.0	NM_001290273	66112.0	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	53.77	55.75	45.32	89.06	49.45	54.66	47.53	46.43	28.73
Merged-chr18-62972934-3	chr18	62972442	62973442	+	763.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4974.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	8.01	2.3	0.0	7.42	5.13	0.0	4.22	3.1	1.87
Merged-chr2-163919040-3	chr2	163918551	163919551	+	763.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183023)	promoter-TSS (NM_183023)	-368.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	24.6	5.53	5.55	35.76	15.86	12.86	16.9	2.65	0.62
Merged-chr17-51044053-1	chr17	51043553	51044553	+	763.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	115325.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	5.72	7.37	11.1	5.4	9.33	3.22	6.34	2.65	5.0
Merged-chr14-65884982-1	chr14	65884482	65885482	+	763.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47680.0	NM_145944	67179.0	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	5.72	2.3	5.55	1.35	5.13	4.82	11.62	14.59	11.24
Merged-chr10-122685475-2	chr10	122684979	122685979	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	6164.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	5.72	2.76	12.95	14.17	5.6	4.82	14.79	14.59	10.62
Merged-chr6-113045624-2	chr6	113045145	113046145	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355266)	promoter-TSS (NM_001355266)	-657.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	122.42	135.47	120.24	108.63	113.83	118.96	145.75	186.59	79.94
Merged-chr12-70347415-2	chr12	70346910	70347910	+	763.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001286387, exon 1 of 14)	5' UTR (NM_001286387, exon 1 of 14)	204.0	NM_001286386	94090.0	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.57	1.84	12.95	2.02	1.4	6.43	2.11	0.44	0.0
Merged-chr15-80711872-3	chr15	80711292	80712292	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144812, intron 1 of 24)	CpG	479.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	151.02	101.37	79.55	120.77	104.96	94.85	127.8	106.12	47.46
Merged-chr16-45786886-3	chr16	45786383	45787383	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 5 of 16)	intron (NM_001357078, intron 5 of 16)	-43928.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	3.43	5.07	0.0	4.72	4.2	3.22	3.17	2.65	1.25
Merged-chr12-54577461-3	chr12	54576960	54577960	+	763.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	68552.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	5.72	11.98	3.7	12.82	12.13	9.65	35.91	17.69	9.99
Merged-chr9-94672753-3	chr9	94672247	94673247	+	763.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 1 of 15)	intron (NM_177909, intron 1 of 15)	2855.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	21.17	11.52	8.32	14.84	17.26	17.68	12.67	12.82	8.74
Merged-chr19-29431644-2	chr19	29431150	29432150	+	763.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	MTEb|LTR|ERVL-MaLR	20731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	85.24	81.56	67.52	62.75	40.12	73.14	77.1	88.88	64.95
Merged-chr4-122995589-3	chr4	122995092	122996092	+	763.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303121)	promoter-TSS (NM_001303121)	-339.0	NM_001303121	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	2.29	2.76	4.62	4.05	0.47	4.02	4.22	0.0	5.0
Merged-chr12-70476388-3	chr12	70475874	70476874	+	763.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	23220.0	NM_028339	72736.0	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	98.97	50.23	89.72	72.19	34.06	53.85	108.79	70.75	63.08
Merged-chr7-100434040-3	chr7	100433546	100434546	+	763.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017985, intron 23 of 32)	intron (NM_001017985, intron 23 of 32)	-38945.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	148.73	122.11	93.42	146.41	70.91	95.65	95.06	140.17	87.43
Merged-chr10-91209475-1	chr10	91208975	91209975	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	intron (NR_151510, intron 3 of 3)	11144.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	22.88	31.79	31.45	16.19	20.53	40.19	22.18	29.63	26.23
Merged-chr14-73473768-2	chr14	73473266	73474266	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-36283.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	29.17	21.2	16.65	18.89	16.79	20.09	19.01	15.48	16.86
Merged-chr1-176836122-2	chr1	176835613	176836613	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037996)	promoter-TSS (NR_037996)	20.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	100.11	82.48	83.25	84.34	65.31	94.85	103.51	128.23	76.19
Merged-chr11-88070647-1	chr11	88070147	88071147	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016686, intron 1 of 5)	intron (NM_016686, intron 1 of 5)	2368.0	NM_016686	22344.0	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	3.43	5.07	9.25	3.37	2.33	5.63	4.22	3.98	8.74
Merged-chr15-25546284-1	chr15	25545784	25546784	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76266.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	2.29	7.37	3.7	7.42	3.27	3.22	5.28	0.88	8.74
Merged-chr2-11568147-2	chr2	11567645	11568645	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-14216.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	8.01	4.15	0.0	4.05	0.47	3.22	2.11	2.21	1.25
Merged-chr13-20098148-2	chr13	20097645	20098645	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	7638.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	12.59	19.81	33.3	16.87	18.66	16.08	9.51	9.73	11.24
Merged-chr1-171567004-2	chr1	171566501	171567501	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	7808.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	4.58	8.29	1.85	10.12	6.53	1.61	5.28	0.88	1.25
Merged-chr11-90240397-1	chr11	90239897	90240897	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	100.68	96.3	52.72	119.43	104.96	115.75	68.65	60.13	62.45
Merged-chr3-15012517-1	chr3	15012017	15013017	+	763.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41316.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	9.15	12.9	15.72	10.8	5.13	20.9	4.22	6.63	2.5
Merged-chr15-25533351-2	chr15	25532847	25533847	+	763.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89203.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.58	6.91	7.4	10.8	13.53	8.04	3.17	8.84	5.0
Merged-chr6-124756842-3	chr6	124756365	124757365	+	763.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-378.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	30.32	13.36	31.45	34.41	18.19	26.53	29.57	11.94	14.36
Merged-chr17-10874500-5	chr17	10874042	10875042	+	763.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	34183.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	20.59	19.81	24.05	14.84	27.99	29.74	14.79	13.71	13.74
Merged-chr11-95713485-3	chr11	95712983	95713983	+	763.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045780)	promoter-TSS (NR_045780)	-729.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	206.51	184.31	231.24	199.72	143.22	163.97	240.81	158.74	133.65
Merged-chr7-27325876-3	chr7	27325368	27326368	+	763.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113549, intron 11 of 29)	intron (NM_001113549, intron 11 of 29)	7780.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	8.01	2.3	7.4	3.37	2.33	0.0	0.0	2.65	4.37
Merged-chr6-22409094-3	chr6	22408604	22409604	+	763.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53023.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	54.35	45.16	31.45	64.77	62.05	49.83	63.37	70.3	26.23
Merged-chr4-149120116-1	chr4	149119616	149120616	+	763.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104263, exon 4 of 4)	non-coding (NR_104263, exon 4 of 4)	6647.0	NM_007745	12854.0	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	8.01	5.07	1.85	8.77	2.8	12.86	4.22	3.98	3.75
Merged-chr9-103229392-3	chr9	103229004	103230004	+	763.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	782.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	64.07	52.53	37.0	107.28	116.16	65.91	64.43	42.89	34.97
Merged-chr13-55640669-3	chr13	55640174	55641174	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282055, intron 3 of 22)	B3A|SINE|B2	5675.0	NM_001282055	212880.0	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	4.58	4.15	5.55	2.02	3.27	5.63	6.34	9.29	7.49
Merged-chr15-25858255-3	chr15	25857760	25858760	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	14962.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	10.3	5.07	3.7	27.66	9.8	5.63	12.67	6.19	5.62
Merged-chr4-125962865-3	chr4	125962376	125963376	+	763.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40566.0	NR_015560	72395.0	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	5.72	2.76	3.7	3.37	2.8	1.61	5.28	1.77	3.75
Merged-chr3-108164919-3	chr3	108164418	108165418	+	763.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9986.0	NM_001305461	229714.0	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	4.0	1.38	1.85	3.37	0.93	4.02	3.17	3.98	1.25
Merged-chr4-129276649-3	chr4	129276148	129277148	+	763.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10973.0	NM_023485	68828.0	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	2.29	0.0	0.0	1.35	2.8	1.61	1.06	1.33	1.25
Merged-chr19-46369370-3	chr19	46368874	46369874	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029186, intron 6 of 8)	intron (NM_029186, intron 6 of 8)	12494.0	NM_029186	75146.0	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	8.58	2.3	3.7	0.67	3.73	7.23	5.28	0.44	3.12
Merged-chr10-58405567-1	chr10	58405067	58406067	+	763.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359116, intron 2 of 9)	intron (NM_001359116, intron 2 of 9)	11194.0	NM_001346676	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	40.04	47.0	54.57	40.48	17.73	41.8	20.07	20.34	38.72
Merged-chr6-50223183-1	chr6	50222683	50223683	+	763.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018769, intron 5 of 9)	ORR1E|LTR|ERVL-MaLR	38586.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	2.29	6.91	1.85	9.45	3.73	5.63	7.39	2.65	1.87
Merged-chr10-71346892-3	chr10	71346390	71347390	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347191)	promoter-TSS (NM_001347191)	-873.0	NM_001347191	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	16.02	19.35	26.82	41.16	23.79	16.88	31.69	16.36	11.87
Merged-chr14-101559687-3	chr14	101559262	101560262	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	Lx6|LINE|L1	49429.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	40.04	25.8	43.47	27.66	28.46	24.11	54.92	38.91	27.48
Merged-chr13-94416004-1	chr13	94415504	94416504	+	763.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009680, intron 6 of 26)	intron (NM_009680, intron 6 of 26)	57044.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	37.18	32.72	21.27	1.35	1.87	1.61	1.06	3.98	2.5
Merged-chr9-123968750-3	chr9	123968254	123969254	+	763.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009912)	promoter-TSS (NM_009912)	-62.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	9.72	3.69	3.7	8.1	3.73	20.9	6.34	5.31	14.36
Merged-chr4-141246712-2	chr4	141246208	141247208	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172520, intron 3 of 16)	intron (NM_172520, intron 3 of 16)	3824.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	2.86	3.23	0.92	2.02	1.87	0.0	1.06	2.21	3.75
Merged-chr10-118162875-2	chr10	118162392	118163392	+	763.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162904, intron 12 of 14)	intron (NM_001162904, intron 12 of 14)	21105.0	NM_010785	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	14.3	11.52	31.45	15.52	12.6	24.11	1.06	0.0	1.25
Merged-chr6-72517728-2	chr6	72517243	72518243	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26648.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	4.0	2.3	1.85	5.4	2.8	3.22	7.39	5.31	6.25
Merged-chr12-11217865-1	chr12	11217365	11218365	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8917.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	4.58	9.22	1.85	4.05	8.4	11.25	2.11	2.21	6.25
Merged-chr9-44082759-2	chr9	44082280	44083280	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198092, intron 2 of 12)	RMER15|LTR|ERVL	-2140.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	6.86	10.6	7.4	12.14	7.46	3.22	7.39	9.73	6.25
Merged-chr2-117945144-1	chr2	117944644	117945644	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	123216.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	8.01	6.45	8.32	6.07	7.0	3.22	4.22	6.19	3.75
Merged-chr15-103177215-2	chr15	103176706	103177706	+	763.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13922.0	NM_027885	71726.0	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	5.15	1.84	1.85	2.02	1.4	3.22	0.0	4.42	1.25
Merged-chr6-34016039-3	chr6	34015524	34016524	+	763.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13424.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	16.59	15.21	15.72	18.22	22.86	31.35	29.57	27.41	43.72
Merged-chr14-45632912-3	chr14	45632392	45633392	+	763.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	MTD|LTR|ERVL-MaLR	25161.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	12.01	11.06	12.02	9.45	8.86	5.63	34.85	30.95	13.12
Merged-chr3-142443521-3	chr3	142443020	142444020	+	763.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47824.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	1.14	4.61	0.0	2.7	3.27	3.22	4.22	0.88	0.0
Merged-chr12-73967318-3	chr12	73966868	73967868	+	763.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	ID_B1|SINE|B4	2838.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	53.2	90.77	50.87	69.5	46.18	69.13	78.16	60.58	61.2
Merged-chr10-86884459-3	chr10	86883967	86884967	+	763.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	105462.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	104.11	132.71	117.47	101.88	88.64	90.83	135.19	195.44	81.81
Merged-chr18-42260042-1	chr18	42259542	42260542	+	763.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134137, intron 1 of 31)	intron (NM_134137, intron 1 of 31)	2029.0	NM_134137	107045.0	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	19.45	23.96	16.65	18.89	14.46	16.88	7.39	8.4	10.62
Merged-chr9-13742621-1	chr9	13742121	13743121	+	763.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6560.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	6.29	11.98	15.72	10.12	4.2	22.51	7.39	8.4	9.99
Merged-chr12-80230157-3	chr12	80229663	80230663	+	763.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	30208.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	64.64	76.03	105.44	61.4	47.12	83.59	65.48	49.08	49.96
Merged-chr2-163939787-2	chr2	163939285	163940285	+	763.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21102.0	NM_183023	241770.0	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	13.73	8.75	7.4	17.54	14.46	12.06	2.11	1.33	6.25
Merged-chr1-53265243-2	chr1	53264715	53265715	+	763.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153556, intron 4 of 12)	intron (NM_153556, intron 4 of 12)	31813.0	NM_153556	227099.0	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	PMS1 homolog 1, mismatch repair system component	protein-coding	7.44	7.83	9.25	8.1	14.0	5.63	10.56	8.4	11.87
Merged-chr17-78264631-4	chr17	78264084	78265084	+	763.15625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	Tigger12A|DNA|TcMar-Tigger	64336.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	28.03	14.28	8.32	18.89	10.26	6.43	9.51	11.05	6.87
Merged-chr6-116172646-3	chr6	116172138	116173138	+	763.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	L1VL4|LINE|L1	20736.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	41.19	45.16	20.35	38.46	35.45	36.97	55.98	56.6	23.73
Merged-chr2-52885044-3	chr2	52884540	52885540	+	763.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTD|LTR|ERVL-MaLR	27172.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	94.39	67.27	86.02	72.87	69.04	92.44	80.27	96.83	71.82
Merged-chrX-19157618-2	chrX	19157115	19158115	+	763.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10644.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	24.03	25.34	15.72	13.49	12.6	31.35	21.12	24.32	14.36
Merged-chr15-76871393-2	chr15	76870861	76871861	+	763.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001007568)	promoter-TSS (NM_001007568)	74.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	20.02	11.06	7.4	49.93	45.72	38.58	19.01	26.09	7.49
Merged-chr11-11973562-1	chr11	11973062	11974062	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177629, intron 2 of 15)	intron (NM_001177629, intron 2 of 15)	54409.0	NM_001177629	14783.0	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	6.86	1.38	5.55	5.4	2.8	0.0	1.06	3.1	4.37
Merged-chr10-78018977-1	chr10	78018477	78019477	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9170.0	NM_001358793	18641.0	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-B|PFK-L	phosphofructokinase, liver, B-type	protein-coding	4.0	4.61	0.0	5.4	2.33	0.0	2.11	1.33	0.0
Merged-chr18-52750950-1	chr18	52750450	52751450	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16861.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	10.3	16.13	11.1	33.74	22.86	14.47	27.46	20.34	5.0
Merged-chr10-121426734-1	chr10	121426234	121427234	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	49516.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.72	7.83	9.25	12.14	4.2	8.84	11.62	4.86	1.25
Merged-chr5-121820780-1	chr5	121820280	121821280	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306126, intron 3 of 8)	intron (NM_001306126, intron 3 of 8)	-1507.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	16.59	17.97	43.47	20.24	20.99	34.56	15.84	20.78	12.49
Merged-chr12-75563192-1	chr12	75562692	75563692	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	33008.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	6.29	5.07	10.17	8.77	7.46	3.22	9.51	7.96	2.5
Merged-chr11-106704858-1	chr11	106704358	106705358	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	10423.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	34.32	27.65	41.62	25.64	21.93	13.66	27.46	24.76	18.11
Merged-chr3-105893239-2	chr3	105892741	105893741	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-11180.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	109.83	116.12	79.55	108.63	75.11	110.12	127.8	135.75	115.54
Merged-chr16-92826961-1	chr16	92826461	92827461	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001111021)	promoter-TSS (NM_001111021)	-887.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	106.4	83.4	59.2	131.57	114.29	117.35	91.89	77.38	46.22
Merged-chr6-118134852-2	chr6	118134304	118135304	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	4026.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	8.01	10.6	3.7	4.05	8.4	12.86	9.51	5.31	11.24
Merged-chr11-119393443-1	chr11	119392943	119393943	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2971.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	96.68	119.8	76.77	115.38	99.37	112.53	166.88	204.28	111.17
Merged-chr11-115658714-2	chr11	115658214	115659214	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	(CA)n|Simple_repeat|Simple_repeat	-30419.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	34.9	21.66	32.37	65.45	38.25	46.62	83.44	62.79	42.47
Merged-chr3-66004798-1	chr3	66004298	66005298	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46549.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	2.29	4.61	12.95	4.05	3.27	4.02	2.11	2.65	0.0
Merged-chr16-55969335-1	chr16	55968835	55969835	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024218, intron 3 of 5)	B1_Mm|SINE|Alu	3060.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	8.58	15.67	6.47	12.14	1.87	9.65	7.39	7.52	13.74
Merged-chr18-11773759-1	chr18	11773259	11774259	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65515.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.0	6.91	7.4	6.07	7.93	4.82	10.56	12.38	13.12
Merged-chr1-38988644-1	chr1	38988144	38989144	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026850, intron 1 of 5)	intron (NM_026850, intron 1 of 5)	830.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	30.32	58.52	50.87	24.96	36.39	26.53	42.25	27.41	25.61
Merged-chr6-137566019-1	chr6	137565519	137566519	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	4990.0	NM_001271595	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	9.72	3.69	7.4	7.42	5.6	3.22	3.17	1.33	5.0
Merged-chr2-60948001-1	chr2	60947501	60948501	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	15203.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.72	5.53	3.7	3.37	3.73	5.63	4.22	3.1	1.25
Merged-chr5-86172079-1	chr5	86171579	86172579	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172712, intron 1 of 32)	intron (NM_172712, intron 1 of 32)	664.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	64.07	63.59	51.8	68.82	52.72	59.48	49.64	47.31	42.47
Merged-chr2-165027374-1	chr2	165026874	165027874	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144892, intron 1 of 7)	intron (NM_144892, intron 1 of 7)	7405.0	NM_144892	228869.0	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	4.58	1.38	3.7	6.07	3.73	2.41	8.45	3.54	6.25
Merged-chr4-144908276-1	chr4	144907776	144908776	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	L2a|LINE|L2	15139.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	32.04	35.02	40.7	39.13	32.66	57.07	38.02	26.09	26.85
Merged-chr1-20067545-1	chr1	20067045	20068045	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 66 of 66)	RLTR35B_MM|LTR|ERVL	-288909.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.57	0.46	1.85	1.35	3.27	1.61	3.17	0.44	3.12
Merged-chr3-154428527-2	chr3	154428023	154429023	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97702.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	0.0	2.3	3.7	6.75	4.67	9.65	7.39	6.19	3.75
Merged-chr3-9724340-1	chr3	9723840	9724840	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	109339.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	13.73	8.29	12.95	13.49	8.86	11.25	20.07	7.52	14.36
Merged-chr7-97800367-1	chr7	97799867	97800867	+	763.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11826.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	31.46	23.96	17.57	22.27	10.73	35.37	47.53	64.56	52.46
Merged-chr6-71950367-1	chr6	71949867	71950867	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 16 of 33)	intron (NM_009088, intron 16 of 33)	41314.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	19.45	29.95	27.75	15.52	13.53	24.92	17.96	21.22	14.36
Merged-chr15-83182151-2	chr15	83181658	83182658	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9950.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	2.29	2.76	0.0	1.35	3.73	3.22	2.11	4.86	8.74
Merged-chr2-62646702-1	chr2	62646202	62647202	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027835)	promoter-TSS (NM_027835)	-447.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	172.76	150.68	86.02	157.88	122.69	69.93	153.15	168.02	52.46
Merged-chr6-37144400-1	chr6	37143900	37144900	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	(CA)n|Simple_repeat|Simple_repeat	155576.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	49.77	41.47	45.32	44.53	21.93	40.99	52.81	59.69	51.21
Merged-chr7-139971618-1	chr7	139971118	139972118	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001347613)	TTS (NM_001347613)	7137.0	NM_001347614	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.58	0.92	0.0	2.7	2.8	0.0	3.17	3.54	1.25
Merged-chr8-77272856-2	chr8	77272360	77273360	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 20 of 22)	intron (NM_030113, intron 20 of 22)	-244196.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	4.0	3.23	7.4	4.72	0.93	4.82	2.11	3.98	2.5
Merged-chr1-183197736-1	chr1	183197236	183198236	+	763.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	23793.0	NM_026866	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	3.43	4.15	3.7	6.07	1.87	5.63	12.67	3.54	3.75
Merged-chr3-87263637-2	chr3	87263140	87264140	+	763.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030707)	promoter-TSS (NM_030707)	-116.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	9.72	1.84	3.7	6.07	2.8	4.82	3.17	1.33	6.25
Merged-chr9-83557502-3	chr9	83556984	83557984	+	762.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	9146.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	17.16	9.68	11.1	7.42	10.26	8.04	19.01	21.22	14.99
Merged-chr4-55811831-3	chr4	55811345	55812345	+	762.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-279370.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	9.72	0.92	9.25	5.4	4.67	0.0	3.17	3.98	1.25
Merged-chr5-122089101-3	chr5	122088591	122089591	+	762.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11860.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	3.43	2.3	1.85	2.02	2.8	0.0	8.45	0.88	1.25
Merged-chr7-48943927-3	chr7	48943415	48944415	+	762.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-15158.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	6.86	11.98	7.4	5.4	10.26	7.23	5.28	1.33	6.25
Merged-chr10-123091985-2	chr10	123091484	123092484	+	762.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15479.0	NM_001163025	67074.0	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	5.72	3.69	2.77	7.42	0.93	2.41	3.17	2.65	8.74
Merged-chr17-13869310-3	chr17	13868880	13869880	+	762.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	MTA_Mm|LTR|ERVL-MaLR	-78993.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	60.07	72.8	48.1	58.7	50.38	82.79	33.8	36.26	29.98
Merged-chr11-70434593-3	chr11	70434096	70435096	+	762.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145429, intron 1 of 14)	intron (NM_145429, intron 1 of 14)	2016.0	NM_001271358	216869.0	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872|Arr3	arrestin, beta 2	protein-coding	188.78	165.42	163.72	192.29	95.63	174.42	215.46	238.33	152.38
Merged-chr11-20470540-2	chr11	20470025	20471025	+	762.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72728.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	23.45	18.43	35.15	18.89	15.39	31.35	67.6	38.03	35.6
Merged-chr17-35190274-3	chr17	35189766	35190766	+	762.872253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1826.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	77.23	66.81	62.9	63.42	40.59	87.61	40.14	49.96	33.1
Merged-chr16-24507872-2	chr16	24507345	24508345	+	762.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-21469.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	10.87	6.91	12.02	13.49	14.46	6.43	10.56	5.75	6.87
Merged-chr1-156841914-2	chr1	156841417	156842417	+	762.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028333, intron 1 of 4)	intron (NM_028333, intron 1 of 4)	2894.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	9.15	7.83	9.25	12.14	7.93	2.41	2.11	1.77	0.0
Merged-chr3-88623523-3	chr3	88622976	88623976	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2082.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	46.34	44.24	50.87	87.71	37.32	95.65	79.21	53.06	48.71
Merged-chr5-41739985-3	chr5	41739488	41740488	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24232.0	NM_007524	12020.0	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	26.31	27.19	20.35	11.47	12.6	12.86	23.24	35.82	11.87
Merged-chr15-97449167-3	chr15	97448667	97449667	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-201880.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	20.59	17.05	11.1	20.24	11.2	6.43	9.51	10.61	5.62
Merged-chr4-129024988-3	chr4	129024475	129025475	+	762.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31751.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	26.31	20.74	29.6	15.52	11.2	17.68	13.73	17.24	24.36
Merged-chr15-12380743-3	chr15	12380239	12381239	+	762.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081064, intron 18 of 23)	intron (NM_001081064, intron 18 of 23)	59243.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.15	1.84	1.85	1.35	1.87	1.61	4.22	2.65	5.62
Merged-chr8-25982340-3	chr8	25981846	25982846	+	762.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029037, exon 5 of 5)	3' UTR (NM_029037, exon 5 of 5)	-5602.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	30.32	35.94	33.3	46.56	40.59	69.93	48.58	41.56	44.97
Merged-chr11-95844156-2	chr11	95843673	95844673	+	762.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023121, intron 2 of 3)	B3|SINE|B2	928.0	NM_001284397	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	147.59	139.62	107.29	174.08	156.28	188.09	305.24	302.44	97.43
Merged-chr11-102573010-3	chr11	102572494	102573494	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6125.0	NR_040286	100040792.0	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	-	predicted gene 11627	ncRNA	2.29	4.61	3.7	4.05	0.93	0.0	2.11	0.88	5.0
Merged-chr1-171562062-2	chr1	171561570	171562570	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 1 of 8)	intron (NM_018729, intron 1 of 8)	2877.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	52.63	37.78	36.07	56.68	48.52	31.35	33.8	15.92	18.11
Merged-chr9-108095795-3	chr9	108095291	108096291	+	762.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007567)	TTS (NM_007567)	-1311.0	NM_146226	235606.0	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	10.3	4.61	9.25	4.72	0.47	4.02	5.28	5.31	5.0
Merged-chr16-30385635-3	chr16	30385130	30386130	+	762.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	2900.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	37.18	50.23	46.25	51.95	44.32	50.64	44.36	47.75	51.21
Merged-chr8-88209924-3	chr8	88209421	88210421	+	762.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	10708.0	NM_001164498	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	13.16	9.68	10.17	16.87	12.13	16.08	11.62	14.15	5.0
Merged-chr8-31149011-3	chr8	31148538	31149538	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1278.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	37.76	52.53	48.1	26.99	36.85	47.42	68.65	57.04	46.84
Merged-chr6-97421862-1	chr6	97421362	97422362	+	762.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 3 of 23)	intron (NM_145148, intron 3 of 23)	37424.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	33.18	46.54	76.77	33.06	33.59	57.87	55.98	41.12	73.07
Merged-chr1-191153287-3	chr1	191152802	191153802	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11515.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.86	5.53	11.1	5.4	2.8	6.43	5.28	0.88	5.0
Merged-chr3-137948320-3	chr3	137947781	137948781	+	762.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	B4A|SINE|B4	29726.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	95.53	86.17	44.4	78.27	48.98	77.16	57.03	77.38	63.08
Merged-chr9-31559682-2	chr9	31559182	31560182	+	762.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95444.0	NM_144936	235135.0	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	6.86	3.23	0.0	1.35	3.73	2.41	4.22	2.21	0.62
Merged-chr18-46601502-2	chr18	46601001	46602001	+	762.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	3797.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	8.58	13.36	5.55	14.17	6.06	4.82	10.56	11.94	4.37
Merged-chr14-79516406-2	chr14	79515898	79516898	+	762.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	724.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	224.25	248.82	132.27	207.14	209.46	119.76	211.24	256.46	83.06
Merged-chr8-106138330-3	chr8	106137888	106138888	+	762.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040344, exon 5 of 5)	non-coding (NR_040344, exon 5 of 5)	-1414.0	NM_176838	77411.0	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	23.45	14.75	22.2	22.27	17.73	28.94	28.52	16.8	12.49
Merged-chr17-14961111-3	chr17	14960634	14961634	+	762.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360983, exon 1 of 9)	exon (NM_001360983, exon 1 of 9)	126.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	45.19	34.56	43.47	39.13	30.32	47.42	45.42	19.46	24.36
Merged-chr13-45394404-4	chr13	45393831	45394831	+	762.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	intron (NM_153789, intron 2 of 6)	4589.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	35.47	31.79	16.65	36.43	34.52	34.56	26.4	27.86	18.74
Merged-chr3-8816964-3	chr3	8816453	8817453	+	762.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025434, intron 2 of 2)	L1_Mus3|LINE|L1	106904.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	5.15	4.15	3.7	6.07	4.2	4.02	4.22	3.1	1.25
Merged-chr10-3840113-3	chr10	3839630	3840630	+	762.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 2 of 16)	intron (NM_001159942, intron 2 of 16)	-32537.0	NM_001033253	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	21.74	11.06	12.95	4.72	5.6	11.25	16.9	16.8	13.74
Merged-chr9-3026914-6	chr9	3026400	3027400	+	762.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	11843.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	25.17	146.99	5.55	38.46	200.13	12.86	70.76	73.4	6.87
Merged-chr5-20934802-3	chr5	20934309	20935309	+	762.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-16180.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	26.89	25.34	28.67	19.57	25.66	24.11	46.47	21.67	15.61
Merged-chr11-116918824-3	chr11	116918320	116919320	+	762.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172948)	promoter-TSS (NM_172948)	-43.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	2.29	0.46	1.85	6.07	0.0	1.61	5.28	1.77	1.25
Merged-chr13-21812366-3	chr13	21811849	21812849	+	762.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175657)	TTS (NM_175657)	565.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	18.31	19.81	24.05	22.94	9.33	28.13	29.57	33.16	31.23
Merged-chr11-53771650-3	chr11	53771223	53772223	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159393, intron 2 of 9)	intron (NM_001159393, intron 2 of 9)	1250.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	70.36	77.41	110.99	54.65	30.32	57.87	125.69	144.59	68.7
Merged-chr9-94698167-1	chr9	94697667	94698667	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 2 of 15)	intron (NM_177909, intron 2 of 15)	28275.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	52.63	63.59	62.9	56.68	37.32	78.77	45.42	44.66	41.22
Merged-chr10-8415724-2	chr10	8415210	8416210	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	103115.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	15.45	7.83	12.95	9.45	8.4	4.82	9.51	6.63	0.62
Merged-chrX-85865037-1	chrX	85864537	85865537	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5236.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	9.15	15.67	7.4	12.14	5.6	12.86	20.07	15.03	18.74
Merged-chr2-157201109-2	chr2	157200589	157201589	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011249, intron 1 of 21)	Lx9|LINE|L1	3445.0	NM_011249	19650.0	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	127.0	144.69	74.0	102.56	97.5	106.9	151.03	150.34	104.92
Merged-chr10-71352172-1	chr10	71351672	71352672	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	L1MC5a|LINE|L1	4409.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	6.86	9.22	17.57	10.12	9.8	12.86	16.9	3.54	4.37
Merged-chr9-7829803-2	chr9	7829308	7830308	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007465, intron 2 of 7)	intron (NM_007465, intron 2 of 7)	6998.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	18.88	28.11	28.67	14.17	6.06	6.43	30.63	26.97	29.98
Merged-chr6-98140958-1	chr6	98140458	98141458	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149175.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	1.14	5.07	10.17	6.75	8.4	4.82	7.39	8.84	14.36
Merged-chr7-46881197-1	chr7	46880697	46881697	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19934.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	1.14	2.3	5.55	5.4	0.93	1.61	2.11	3.98	3.75
Merged-chr16-36657868-1	chr16	36657368	36658368	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	8209.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	29.17	35.02	30.52	39.13	14.46	27.33	21.12	22.11	25.61
Merged-chr6-53951121-1	chr6	53950621	53951621	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027749, intron 6 of 12)	intron (NM_027749, intron 6 of 12)	27552.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	5.72	1.84	0.0	4.72	2.33	1.61	6.34	3.54	1.25
Merged-chr17-35194478-2	chr17	35193991	35194991	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105939)	promoter-TSS (NR_105939)	-16.0	NM_008518	16994.0	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	121.28	79.25	73.07	42.51	29.39	15.27	6.34	6.19	8.74
Merged-chr5-31767337-2	chr5	31766845	31767845	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	MTD|LTR|ERVL-MaLR	69295.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	61.78	78.79	89.72	51.28	64.38	69.93	79.21	61.02	69.95
Merged-chr19-10698493-1	chr19	10697993	10698993	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	-2275.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	29.17	23.04	20.35	16.19	22.39	17.68	25.35	14.59	32.48
Merged-chr11-22842591-1	chr11	22842091	22843091	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	17144.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	92.1	86.17	63.82	97.16	66.24	68.32	101.39	108.77	52.46
Merged-chr2-164926989-2	chr2	164926490	164927490	+	762.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15240.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	11.44	3.23	3.7	4.05	2.33	2.41	2.11	3.1	1.87
Merged-chr19-17130543-1	chr19	17130043	17131043	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174425.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	14.87	19.81	15.72	26.31	16.33	26.53	27.46	23.88	6.25
Merged-chrX-140625154-2	chrX	140624672	140625672	+	762.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24650.0	NM_001077364	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	7.44	11.06	11.1	18.22	14.93	32.15	16.9	20.78	17.49
Merged-chr1-92974543-5	chr1	92974074	92975074	+	762.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271766)	promoter-TSS (NM_001271766)	-773.0	NM_001271766	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	50.91	41.93	81.4	50.6	38.72	97.26	83.44	82.69	72.45
Merged-chr12-102498710-5	chr12	102498123	102499123	+	762.453308	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001199004)	TTS (NM_001199004)	28713.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	36.04	21.2	18.5	57.35	48.52	57.87	40.14	26.53	23.11
Merged-chr10-95617029-3	chr10	95616527	95617527	+	762.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-52881.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	10.87	3.23	5.55	10.8	2.8	6.43	1.06	4.42	2.5
Merged-chr17-71203440-3	chr17	71202930	71203930	+	762.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-1224.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	23.45	21.2	7.4	24.96	12.13	20.9	29.57	19.01	17.49
Merged-chr13-63139971-3	chr13	63139469	63140469	+	762.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 5 of 15)	intron (NM_001289926, intron 5 of 15)	-100060.0	NR_110520	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	26.89	34.1	34.22	48.58	42.45	8.04	34.85	15.03	12.49
Merged-chr9-70194868-3	chr9	70194396	70195396	+	762.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12454.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	16.59	12.9	9.25	21.59	18.66	8.84	7.39	13.71	5.0
Merged-chr11-97404463-2	chr11	97403976	97404976	+	762.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41925.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	8.01	3.23	3.7	3.37	4.2	3.22	1.06	1.77	2.5
Merged-chr7-56042504-2	chr7	56042000	56043000	+	762.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7655.0	NM_010418	15204.0	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	2.29	5.07	0.0	8.77	0.47	1.61	3.17	2.21	1.25
Merged-chr8-36958158-1	chr8	36957658	36958658	+	762.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5716.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	1.72	5.07	0.0	2.7	0.47	0.0	10.56	15.92	11.24
Merged-chr12-76392864-3	chr12	76392362	76393362	+	762.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11314.0	NM_001002012	15512.0	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	16.02	18.89	20.35	28.34	19.59	25.72	14.79	7.52	22.48
Merged-chr3-135689200-3	chr3	135688712	135689712	+	762.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	2335.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	28.6	35.94	44.4	26.31	16.79	11.25	29.57	30.07	43.72
Merged-chr18-21651939-2	chr18	21651469	21652469	+	762.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081403, exon 1 of 8)	exon (NM_001081403, exon 1 of 8)	399.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	4.58	1.38	7.4	4.05	1.4	0.0	1.06	0.0	1.25
Merged-chr3-36816816-2	chr3	36816312	36817312	+	762.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46294.0	NM_172679	229227.0	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	6.86	4.15	5.55	3.37	2.8	2.41	3.17	0.44	3.75
Merged-chr17-32319424-3	chr17	32318913	32319913	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357760, intron 1 of 11)	intron (NM_001357760, intron 1 of 11)	1825.0	NM_001357760	56399.0	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	14.87	11.98	7.4	10.12	6.06	12.86	15.84	17.24	7.49
Merged-chr14-45676837-3	chr14	45676348	45677348	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18705.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	22.88	27.65	18.5	29.01	12.6	34.56	29.57	21.67	14.99
Merged-chr4-74271442-3	chr4	74270930	74271930	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356561, intron 2 of 20)	intron (NM_001356561, intron 2 of 20)	19551.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	6.86	8.75	1.85	12.14	10.26	6.43	8.45	4.42	6.25
Merged-chr12-98383366-3	chr12	98382847	98383847	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR9A2|LTR|ERVK	114712.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	10.3	12.9	13.87	7.42	10.26	3.22	13.73	6.63	1.87
Merged-chr4-132588658-3	chr4	132588170	132589170	+	762.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24603.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	9.15	3.23	5.55	10.12	11.66	5.63	6.34	11.94	1.25
Merged-chr16-78540617-1	chr16	78540117	78541117	+	762.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001252440, exon 5 of 5)	3' UTR (NM_001252440, exon 5 of 5)	-19699.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	37.18	23.5	22.2	28.34	23.79	16.08	43.3	43.33	18.74
Merged-chr8-18924617-1	chr8	18924117	18925117	+	762.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26254.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	6.86	1.84	1.85	2.7	6.53	0.0	3.17	4.86	3.75
Merged-chr16-52000257-2	chr16	51999758	52000758	+	762.325012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12971.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	8.58	2.76	5.55	4.05	6.06	3.22	1.06	3.54	5.0
Merged-chr1-131702632-2	chr1	131702146	131703146	+	762.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311096, intron 4 of 4)	intron (NM_001311096, intron 4 of 4)	13951.0	NM_145509	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	13.16	12.44	5.55	8.1	2.8	9.65	8.45	12.38	18.74
Merged-chr2-126673566-3	chr2	126673050	126674050	+	762.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	intron (NM_001271470, intron 1 of 8)	1802.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	45.76	38.71	12.02	63.42	44.32	21.7	28.52	40.68	26.85
Merged-chr11-32321378-3	chr11	32320883	32321883	+	762.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21314.0	NM_175000	216635.0	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	2.29	1.38	3.7	4.05	1.4	1.61	3.17	2.21	5.0
Merged-chr7-31053183-1	chr7	31052683	31053683	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194321, intron 4 of 7)	G-rich|Low_complexity|Low_complexity	1670.0	NM_052991	56188.0	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	1.14	0.46	0.0	0.0	1.87	1.61	4.22	0.44	0.0
Merged-chr5-99576056-2	chr5	99575530	99576530	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	153030.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	20.02	23.5	12.02	24.96	19.13	28.94	33.8	28.74	18.74
Merged-chr17-71260518-2	chr17	71260024	71261024	+	762.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357338, intron 4 of 7)	B1F|SINE|Alu	50487.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	39.47	20.74	15.72	41.83	30.32	36.17	7.39	0.88	3.75
Merged-chr2-122440729-2	chr2	122440229	122441229	+	762.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172980)	promoter-TSS (NM_172980)	-91.0	NM_172980	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	9.15	13.82	12.95	17.54	7.93	24.92	15.84	14.15	8.74
Merged-chr11-80094687-3	chr11	80094186	80095186	+	762.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029856, exon 2 of 23)	exon (NM_001029856, exon 2 of 23)	5286.0	NM_001029856	237877.0	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	27.46	31.79	20.35	24.29	14.46	16.08	35.91	31.39	13.74
Merged-chr13-17773284-3	chr13	17772798	17773798	+	762.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	25825.0	NR_035412	100316665.0		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	21.74	22.58	19.42	17.54	10.26	4.02	17.96	15.92	23.73
Merged-chr2-128815720-3	chr2	128815204	128816204	+	762.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2599.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	25.74	17.05	10.17	49.93	36.39	28.13	40.14	26.09	13.74
Merged-chr6-53462137-2	chr6	53461647	53462647	+	762.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-111227.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	17.16	21.2	22.2	22.94	32.19	43.4	26.4	27.41	34.97
Merged-chr3-142570878-2	chr3	142570370	142571370	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355403, intron 10 of 11)	intron (NM_001355403, intron 10 of 11)	10514.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	8.58	16.13	12.02	8.77	7.93	12.86	8.45	8.84	6.87
Merged-chr12-91789443-2	chr12	91788977	91789977	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3041.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	14.3	9.22	9.25	9.45	8.4	1.61	2.11	5.75	9.99
Merged-chr12-98272743-2	chr12	98272237	98273237	+	762.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	L1ME3A|LINE|L1	4102.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	25.17	39.63	25.9	34.41	37.79	33.76	35.91	33.6	48.09
Merged-chrX-94140258-3	chrX	94139752	94140752	+	762.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-16485.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	11.44	5.99	0.0	12.14	5.6	1.61	7.39	4.86	8.12
Merged-chr15-62041311-3	chr15	62040802	62041802	+	762.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	2045.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	141.87	119.34	79.55	110.65	80.71	53.85	130.97	149.89	62.45
Merged-chr12-33168641-3	chr12	33168145	33169145	+	762.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	L1MB7|LINE|L1	20959.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	6.29	5.07	14.8	5.4	3.73	2.41	6.34	6.63	7.49
Merged-chrX-36839614-3	chrX	36839122	36840122	+	762.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-22422.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	18.31	7.83	7.4	16.19	15.39	11.25	15.84	12.82	6.25
Merged-chr15-64186890-3	chr15	64186382	64187382	+	762.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	125791.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	35.47	39.63	32.37	43.18	33.12	36.97	29.57	36.7	21.23
Merged-chr11-94236229-3	chr11	94235732	94236732	+	762.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181819, exon 2 of 2)	3' UTR (NM_181819, exon 2 of 2)	6347.0	NM_181819	278507.0	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	3.43	1.38	0.0	3.37	0.0	0.8	3.17	0.0	1.25
Merged-chr10-111455095-3	chr10	111454598	111455598	+	762.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-18129.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	6.86	2.76	16.65	8.77	1.4	3.22	3.17	7.52	2.5
Merged-chr15-96566927-3	chr15	96566350	96567350	+	762.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75112.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	34.9	29.03	30.52	47.9	36.85	40.99	45.42	38.03	36.22
Merged-chr8-94364160-1	chr8	94363660	94364660	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019415, intron 24 of 24)	intron (NM_019415, intron 24 of 24)	-22269.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	48.62	40.09	22.2	30.36	24.72	28.13	24.29	24.76	21.86
Merged-chr2-4573890-2	chr2	4573395	4574395	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 3 of 11)	intron (NM_001177844, intron 3 of 11)	14141.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	52.63	50.23	42.55	60.72	48.52	70.73	61.26	64.11	49.34
Merged-chr1-87230654-3	chr1	87230141	87231141	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	16702.0	NM_001039169	26987.0	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	21.17	18.43	5.55	28.34	9.8	13.66	8.45	11.94	16.24
Merged-chr4-93467574-1	chr4	93467074	93468074	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-132063.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	2.86	4.61	0.0	0.67	4.67	3.22	1.06	6.63	5.0
Merged-chr19-4216188-3	chr19	4215681	4216681	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310038, intron 2 of 3)	intron (NM_001310038, intron 2 of 3)	1792.0	NM_001310039	56708.0	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	18.31	10.14	12.02	18.89	7.46	19.29	14.79	8.84	7.49
Merged-chr9-88241743-1	chr9	88241243	88242243	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85866.0	NM_011851	23959.0	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	1.72	2.3	1.85	6.07	3.27	3.22	2.11	2.65	0.62
Merged-chr8-4212928-1	chr8	4212428	4213428	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	4384.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	4.58	1.38	5.55	3.37	0.93	0.0	3.17	0.44	3.75
Merged-chr17-83219467-1	chr17	83218967	83219967	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134117, intron 1 of 6)	intron (NM_134117, intron 1 of 6)	4184.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	4.58	3.69	6.47	4.05	4.2	3.22	4.22	1.33	1.25
Merged-chr16-78277709-1	chr16	78277209	78278209	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BC1_Mm|scRNA|scRNA	-22255.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	1.72	2.3	1.85	4.72	2.33	1.61	6.34	6.63	0.0
Merged-chr13-83065499-2	chr13	83064985	83065985	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-367152.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	28.03	24.88	13.87	54.65	51.78	43.4	22.18	33.6	13.74
Merged-chr8-124066741-1	chr8	124066241	124067241	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43268.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	2.29	2.76	3.7	6.75	8.4	4.82	6.34	0.88	0.62
Merged-chr4-132975109-3	chr4	132974586	132975586	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	991.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	67.5	83.86	88.8	85.01	60.65	79.58	87.66	79.15	68.7
Merged-chr11-51762204-2	chr11	51761704	51762704	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1459.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	11.44	15.67	14.8	16.87	6.53	15.27	22.18	7.96	13.12
Merged-chr12-108636214-1	chr12	108635714	108636714	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 1 of 14)	intron (NM_001163396, intron 1 of 14)	461.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	142.44	223.02	120.24	186.22	185.2	163.97	201.73	229.93	176.12
Merged-chr15-19856077-1	chr15	19855577	19856577	+	762.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	670704.0	NR_155419	102639102.0	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	9.15	9.22	10.17	2.02	1.87	0.8	1.06	7.52	9.37
Merged-chr7-140049304-1	chr7	140048804	140049804	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010836)	promoter-TSS (NM_010836)	-216.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.0	3.69	1.85	3.37	0.47	4.82	2.11	0.44	3.75
Merged-chr18-76254824-1	chr18	76254324	76255324	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-6297.0	NM_001252481	17126.0	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	10.3	10.14	8.32	4.72	8.4	11.25	7.39	4.42	3.12
Merged-chr12-76551496-2	chr12	76550993	76551993	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	-3568.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	51.48	41.01	54.57	50.6	41.99	57.07	36.97	31.84	35.6
Merged-chr6-53993514-1	chr6	53993014	53994014	+	762.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	14823.0	NR_110484	320178.0	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	4930590G02Rik	RIKEN cDNA 4921529L05 gene	ncRNA	1.72	3.69	10.17	4.05	4.67	0.0	6.34	6.63	6.25
Merged-chr4-136150765-1	chr4	136150265	136151265	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6943.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	9.72	0.46	3.7	4.72	1.4	0.0	3.17	0.88	3.75
Merged-chr6-58831028-1	chr6	58830528	58831528	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361967)	promoter-TSS (NM_001361967)	-437.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	16.59	6.91	9.25	18.89	9.8	29.74	7.39	8.84	8.74
Merged-chr10-111831317-2	chr10	111830817	111831817	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43059.0	NR_046029	629206.0	Mm.391444	NR_046029	ENSMUSG00000112533	Gm20758	-	predicted gene, 20758	ncRNA	6.29	3.69	7.4	4.05	5.6	4.82	4.22	0.88	1.25
Merged-chr1-98094982-1	chr1	98094482	98095482	+	762.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357127, intron 1 of 25)	intron (NM_001357127, intron 1 of 25)	650.0	NM_013626	18484.0	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	4.58	4.15	1.85	6.07	7.0	0.0	1.06	2.21	2.5
Merged-chr12-55481880-1	chr12	55481380	55482380	+	762.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	10767.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	6.86	3.69	7.4	2.02	2.8	1.61	0.0	2.65	1.87
Merged-chr7-25827381-3	chr7	25826892	25827892	+	761.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10862.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	6.86	6.91	7.4	10.8	6.06	3.22	10.56	6.19	7.49
Merged-chr4-149777366-2	chr4	149776827	149777827	+	761.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3060.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	25.74	16.59	26.82	10.12	4.67	8.04	3.17	5.31	6.87
Merged-chr9-59482603-3	chr9	59482104	59483104	+	761.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045640)	promoter-TSS (NR_045640)	-863.0	NR_045640	100504377.0	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	10.87	11.06	8.32	11.47	10.26	11.25	12.67	17.69	4.37
Merged-chr9-111994031-3	chr9	111993534	111994534	+	761.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	124677.0	NR_029823	723815.0		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	5.72	8.29	6.47	4.05	9.33	0.0	4.22	1.77	3.75
Merged-chr6-48016321-3	chr6	48015802	48016802	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31492.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	1.72	0.46	1.85	2.02	0.93	1.61	2.11	0.44	0.0
Merged-chr18-69400101-3	chr18	69399629	69400629	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	53969.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	71.51	73.26	39.77	94.46	136.69	66.71	73.93	122.92	44.34
Merged-chr17-88274524-3	chr17	88274032	88275032	+	761.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	149020.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	10.87	10.6	5.55	18.89	11.66	13.66	15.84	13.27	9.37
Merged-chr15-96658958-3	chr15	96658436	96659436	+	761.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16023.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	16.02	8.29	3.7	12.14	4.2	3.22	13.73	9.29	14.99
Merged-chr4-128616016-3	chr4	128615497	128616497	+	761.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	2622.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	68.07	74.65	74.0	58.7	43.39	75.56	78.16	79.15	70.57
Merged-chr5-20812088-2	chr5	20811586	20812586	+	761.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 3 of 17)	intron (NM_172992, intron 3 of 17)	70038.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.43	10.6	1.85	6.75	4.67	14.47	7.39	6.63	8.12
Merged-chr4-128806868-4	chr4	128806449	128807449	+	761.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-837.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	63.5	45.16	77.7	76.24	43.85	85.2	81.33	43.33	44.34
Merged-chr15-65786045-2	chr15	65785507	65786507	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1013.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	12.01	7.83	5.55	11.47	7.93	10.45	13.73	0.88	5.62
Merged-chr11-110479254-2	chr11	110478766	110479766	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356346)	promoter-TSS (NM_001356346)	-74.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.58	6.91	0.0	6.75	4.67	2.41	40.14	32.28	38.1
Merged-chrX-159061520-2	chrX	159061019	159062019	+	761.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-194263.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	6.86	2.76	0.0	10.12	8.86	5.63	3.17	3.1	7.49
Merged-chr9-14066903-3	chr9	14066409	14067409	+	761.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-209392.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	32.04	36.86	25.9	29.01	25.19	24.92	42.25	26.97	31.23
Merged-chr4-141724881-3	chr4	141724371	141725371	+	761.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1452.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	34.32	24.88	28.67	33.06	24.26	32.96	32.74	17.69	29.98
Merged-chr19-7485332-3	chr19	7484805	7485805	+	761.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2014.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	17.16	12.9	12.02	21.59	14.93	22.51	9.51	6.19	8.12
Merged-chr16-5244648-3	chr16	5244139	5245139	+	761.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027446, exon 8 of 8)	3' UTR (NM_027446, exon 8 of 8)	11018.0	NM_145362	208211.0	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	2.86	2.3	3.7	0.0	3.27	2.41	1.06	0.88	1.25
Merged-chr13-55421271-3	chr13	55420778	55421778	+	761.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021489, exon 8 of 14)	exon (NM_021489, exon 8 of 14)	5526.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	10.3	5.07	5.55	12.82	3.27	3.22	11.62	4.86	6.25
Merged-chr15-67405705-3	chr15	67405195	67406195	+	761.761108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178926.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.58	3.23	5.55	8.1	4.67	6.43	9.51	3.1	3.75
Merged-chr17-15808650-3	chr17	15808127	15809127	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	17959.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.86	2.76	7.4	9.45	3.27	4.82	27.46	14.15	21.86
Merged-chr6-142752192-2	chr6	142751700	142752700	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4486.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	24.6	31.79	35.15	31.04	29.39	40.19	32.74	25.2	28.73
Merged-chr2-83722041-3	chr2	83721544	83722544	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2353.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	19.45	17.51	10.17	18.22	21.46	24.11	22.18	30.07	18.11
Merged-chr16-36709011-2	chr16	36708508	36709508	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 2 of 7)	intron (NM_001285788, intron 2 of 7)	15030.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	97.82	51.61	42.55	82.32	37.32	36.97	53.87	54.39	36.22
Merged-chr1-23189529-2	chr1	23189032	23190032	+	761.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82737.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	11.44	23.96	9.25	5.4	8.86	11.25	8.45	8.84	6.87
Merged-chr8-10645892-1	chr8	10645392	10646392	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	236562.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	5.15	3.69	0.0	4.05	4.67	1.61	6.34	1.77	5.0
Merged-chr1-156861797-1	chr1	156861297	156862297	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028333)	TTS (NM_028333)	22774.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	5.15	11.52	14.8	16.19	10.26	14.47	5.28	3.1	6.25
Merged-chr7-97078714-1	chr7	97078214	97079214	+	761.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3037.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	13.16	15.21	5.55	11.47	7.0	4.82	8.45	5.31	5.0
Merged-chr14-40904853-2	chr14	40904349	40905349	+	761.6999509999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11884.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	9.15	4.61	5.55	7.42	4.2	1.61	3.17	2.65	5.0
Merged-chr19-55581074-3	chr19	55580574	55581574	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	121130.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	46.34	23.5	30.52	19.57	20.06	32.96	33.8	26.97	20.61
Merged-chr6-119859206-3	chr6	119858687	119859687	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	10994.0	NR_030776	67289.0	Mm.418299	NR_030776		3110021A11Rik	-	RIKEN cDNA 3110021A11 gene	ncRNA	19.45	18.43	24.05	21.59	24.26	32.96	10.56	6.19	16.24
Merged-chr11-87967867-3	chr11	87967377	87968377	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18708.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	6.29	3.23	0.0	7.42	1.4	1.61	4.22	4.86	3.75
Merged-chr11-52361605-3	chr11	52361109	52362109	+	761.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011694, intron 1 of 8)	CpG	747.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	186.49	216.11	189.62	178.8	236.52	197.73	219.69	205.17	118.04
Merged-chr6-15750242-1	chr6	15749742	15750742	+	761.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	29581.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	9.72	8.75	7.4	9.45	7.93	9.65	16.9	8.4	6.25
Merged-chr11-30268281-2	chr11	30267781	30268781	+	761.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-48509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	3.43	1.38	0.0	2.7	3.27	3.22	0.0	0.0	1.25
Merged-chr14-109484990-2	chr14	109484529	109485529	+	761.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-570790.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	5.15	2.76	1.85	12.82	13.06	3.22	8.45	12.82	7.49
Merged-chr4-132079782-3	chr4	132079303	132080303	+	761.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4490.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	20.59	10.14	11.1	14.84	8.4	9.65	20.07	9.73	11.24
Merged-chr4-130912374-3	chr4	130911883	130912883	+	761.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010686)	promoter-TSS (NM_010686)	-951.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	27.46	23.04	19.42	41.16	20.53	23.31	27.46	25.2	12.49
Merged-chr2-132101016-3	chr2	132100512	132101512	+	761.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 2 of 6)	RLTR19-int|LTR|ERVK	44096.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	88.1	48.38	39.77	69.5	41.52	41.8	68.65	49.52	24.36
Merged-chr3-52019811-3	chr3	52019334	52020334	+	761.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	85172.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.86	8.75	4.62	14.84	8.86	4.82	8.45	8.84	6.25
Merged-chr17-35246154-3	chr17	35245684	35246684	+	761.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019693, intron 4 of 10)	intron (NM_019693, intron 4 of 10)	2109.0	NR_105941	102465589.0		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	10.3	12.9	12.95	11.47	12.6	12.86	4.22	7.07	6.87
Merged-chr5-91402886-2	chr5	91402378	91403378	+	761.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_007568, exon 1 of 6)	5' UTR (NM_007568, exon 1 of 6)	116.0	NM_007568	12223.0	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	1.14	2.3	2.77	1.35	5.13	1.61	4.22	0.0	1.87
Merged-chr3-88631165-3	chr3	88630675	88631675	+	761.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198913, intron 2 of 21)	intron (NM_001198913, intron 2 of 21)	9781.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	9.72	13.82	16.65	14.17	13.53	19.29	11.62	8.4	19.98
Merged-chr17-72798030-3	chr17	72797530	72798530	+	761.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38598.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.58	4.15	1.85	2.02	1.4	4.02	3.17	3.98	3.12
Merged-chr14-71104187-2	chr14	71103691	71104691	+	761.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147082.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	3.43	0.0	1.85	4.05	1.87	6.43	2.11	4.42	2.5
Merged-chr7-105726573-3	chr7	105726075	105727075	+	761.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10009.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	5.15	5.99	3.7	6.75	0.0	3.22	4.22	3.54	6.25
Merged-chr2-60905420-3	chr2	60904914	60905914	+	761.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-23976.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	9.15	7.83	1.85	11.47	8.86	16.08	8.45	5.75	9.37
Merged-chr1-174043882-3	chr1	174043389	174044389	+	761.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146717)	TTS (NM_146717)	1956.0	NM_146717	258712.0	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	16.02	6.45	9.25	37.78	12.13	20.9	48.58	22.55	18.11
Merged-chr12-79347874-2	chr12	79347377	79348377	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	50526.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	1.14	5.53	0.0	3.37	1.4	0.0	6.34	2.65	3.75
Merged-chr2-180726199-2	chr2	180725697	180726697	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183161, intron 1 of 12)	intron (NM_183161, intron 1 of 12)	858.0	NM_183161	228993.0	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	54.35	31.79	50.87	53.3	38.72	57.07	74.99	45.99	33.1
Merged-chr17-35471044-1	chr17	35470544	35471544	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010391, exon 3 of 7)	exon (NM_010391, exon 3 of 7)	955.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	9.15	4.61	0.92	6.07	2.33	1.61	2.11	0.88	1.25
Merged-chr1-164057001-1	chr1	164056501	164057501	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5075.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.86	4.15	1.85	5.4	3.73	3.22	4.22	5.31	6.25
Merged-chr16-77083102-1	chr16	77082602	77083602	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 16 of 23)	RLTR11A2|LTR|ERVK	69033.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	21.17	33.64	29.6	16.87	21.93	40.99	33.8	27.41	52.46
Merged-chr2-180964213-3	chr2	180963700	180964700	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3025.0	NM_145760	228998.0	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	4.0	7.83	1.85	3.37	3.27	3.22	3.17	0.0	2.5
Merged-chr13-119444427-1	chr13	119443927	119444927	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 4 of 10)	intron (NM_145457, intron 4 of 10)	15525.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	16.59	23.96	24.05	13.49	19.59	25.72	20.07	16.36	21.86
Merged-chr2-91328700-3	chr2	91328160	91329160	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	63545.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	13.16	6.91	11.1	18.22	12.13	3.22	4.22	4.42	3.75
Merged-chr10-81258094-2	chr10	81257595	81258595	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285853, intron 1 of 12)	intron (NM_001285853, intron 1 of 12)	796.0	NM_001285853	17179.0	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	12.59	6.91	7.4	8.77	5.13	9.65	5.28	4.86	4.37
Merged-chr7-114922387-1	chr7	114921887	114922887	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26263.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.29	1.84	0.0	0.67	4.67	1.61	1.06	0.0	1.87
Merged-chr11-99186279-3	chr11	99185758	99186758	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31181.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	22.31	12.9	25.9	13.49	9.8	9.65	24.29	11.5	12.49
Merged-chr4-86723755-2	chr4	86723254	86724254	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24801.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	6.29	4.61	1.85	4.72	1.4	7.23	3.17	1.33	6.25
Merged-chr1-191025452-2	chr1	191024968	191025968	+	761.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027298, exon 1 of 2)	non-coding (NR_027298, exon 1 of 2)	117.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	106.4	88.47	110.99	90.41	66.24	65.11	133.08	114.96	74.94
Merged-chr4-43453531-1	chr4	43453031	43454031	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110321, intron 2 of 7)	intron (NM_001110321, intron 2 of 7)	1095.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	21.17	27.19	38.85	35.09	46.65	49.83	33.8	38.03	19.36
Merged-chr7-114072134-2	chr7	114071643	114072643	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	45638.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	9.72	4.61	8.32	6.07	1.4	4.82	7.39	3.98	3.12
Merged-chr13-8679376-1	chr13	8678876	8679876	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110345, intron 4 of 10)	intron (NR_110345, intron 4 of 10)	191668.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	3.43	2.76	7.4	7.42	11.2	12.86	5.28	4.42	5.62
Merged-chr6-72038900-1	chr6	72038400	72039400	+	761.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	RLTR13C2|LTR|ERVK	3628.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	6.29	12.44	14.8	20.92	8.86	16.08	15.84	15.03	12.49
Merged-chr9-13716511-3	chr9	13715996	13716996	+	761.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32685.0	NR_024025	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	4.0	1.84	3.7	5.4	5.13	3.22	2.11	0.0	6.25
Merged-chr15-6030565-3	chr15	6030066	6031066	+	761.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155428, intron 2 of 2)	Lx8b|LINE|L1	14138.0	NR_155428	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	6.86	5.53	3.7	8.77	3.73	0.8	4.22	3.1	5.62
Merged-chr15-12012637-2	chr15	12012142	12013142	+	761.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-16635.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	11.44	12.44	9.25	7.42	7.46	9.65	6.34	3.1	5.62
Merged-chr2-148585326-2	chr2	148584839	148585839	+	761.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-87276.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.29	5.53	6.47	14.17	6.06	10.45	8.45	8.4	6.25
Merged-chr9-83565478-2	chr9	83564986	83565986	+	761.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	17148.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	13.73	12.44	12.02	12.14	11.2	16.08	3.17	9.29	3.75
Merged-chr2-161512126-1	chr2	161511626	161512626	+	761.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-403040.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	4.0	1.38	1.85	0.67	2.33	0.0	2.11	5.31	14.36
Merged-chr1-74748909-3	chr1	74748399	74749399	+	761.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153744)	promoter-TSS (NM_153744)	56.0	NM_153744	241113.0	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catalytic subunit	protein-coding	8.58	1.38	3.7	2.7	2.8	4.82	0.0	2.65	2.5
Merged-chr7-31111797-2	chr7	31111280	31112280	+	761.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276269)	promoter-TSS (NM_001276269)	-783.0	NM_001276269	15451.0	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	147.02	123.03	68.45	132.92	83.97	75.56	144.7	98.6	72.45
Merged-chr13-105204088-1	chr13	105203588	105204588	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	88926.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	2.29	10.14	7.4	5.4	4.67	11.25	3.17	1.77	8.74
Merged-chr10-120872590-1	chr10	120872090	120873090	+	761.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	14961.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	3.43	0.92	0.0	2.7	0.93	1.61	0.0	1.33	5.0
Merged-chr1-78897375-1	chr1	78896875	78897875	+	761.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	MLTR25A|LTR|ERVK	80464.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	10.87	7.83	7.4	4.72	4.67	4.82	7.39	4.86	3.75
Merged-chr11-101735212-3	chr11	101734713	101735713	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144831, intron 2 of 22)	URR1B|DNA|hAT-Charlie	2257.0	NM_144831	217207.0	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	25.74	20.74	34.22	33.06	25.66	24.92	45.42	51.29	27.48
Merged-chr2-43784138-3	chr2	43783609	43784609	+	761.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	35285.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	12.01	17.51	12.95	14.17	15.86	13.66	16.9	21.67	14.36
Merged-chr6-85402916-3	chr6	85402387	85403387	+	761.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20999.0	NM_001007472	384452.0	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	6.29	6.45	9.25	6.07	4.2	10.45	7.39	4.86	8.74
Merged-chr2-153263248-3	chr2	153262753	153263753	+	761.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080463, intron 6 of 6)	intron (NM_080463, intron 6 of 6)	21721.0	NM_080463	140484.0	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	30.89	20.74	18.5	11.47	7.0	13.66	4.22	17.24	21.23
Merged-chr4-131918874-3	chr4	131918369	131919369	+	761.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102394, intron 1 of 2)	intron (NR_102394, intron 1 of 2)	1160.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	11.44	3.69	14.8	17.54	9.8	8.04	3.17	7.07	2.5
Merged-chr13-73459393-3	chr13	73458942	73459942	+	761.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7941.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	16.59	13.36	23.12	16.19	12.13	9.65	12.67	8.84	9.99
Merged-chr15-81044591-3	chr15	81044060	81045060	+	761.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 3 of 13)	intron (NM_001082536, intron 3 of 13)	60487.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	60.07	53.91	49.02	53.3	46.18	44.21	43.3	35.82	9.37
Merged-chr14-20846316-2	chr14	20845808	20846808	+	761.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9646.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	129.86	124.87	56.42	106.61	86.77	98.87	126.74	156.09	73.69
Merged-chr6-100211857-2	chr6	100211351	100212351	+	761.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	75507.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	25.74	13.36	5.55	26.31	11.2	20.09	28.52	18.57	9.37
Merged-chr16-62826782-3	chr16	62826283	62827283	+	761.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 3 of 9)	intron (NM_026577, intron 3 of 9)	12107.0	NM_026588	68159.0	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	6.29	6.91	3.7	6.75	6.06	4.02	7.39	3.1	6.25
Merged-chr14-66635173-1	chr14	66634673	66635673	+	761.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271761)	promoter-TSS (NM_001271761)	-78.0	NM_001271759	11549.0	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	5.15	2.3	0.0	4.72	2.8	5.63	4.22	1.33	2.5
Merged-chr9-22394933-2	chr9	22394417	22395417	+	761.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-5711.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	4.58	6.91	1.85	3.37	3.73	3.22	8.45	10.17	7.49
Merged-chr5-99630313-3	chr5	99629828	99630828	+	761.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	B4A|SINE|B4	98732.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	2.86	4.61	6.47	0.67	2.8	0.0	6.34	4.86	7.49
Merged-chr8-119574554-3	chr8	119574064	119575064	+	761.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026648)	promoter-TSS (NM_026648)	636.0	NM_175185	72552.0	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	58.92	45.16	41.62	66.12	72.31	70.73	63.37	34.05	27.48
Merged-chr18-60740576-2	chr18	60740089	60741089	+	761.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	6157.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	27.46	14.75	14.8	23.62	15.39	29.74	21.12	12.38	10.62
Merged-chr1-131492609-2	chr1	131492116	131493116	+	761.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	34745.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	32.61	30.87	37.0	35.09	27.99	17.68	24.29	14.59	28.73
Merged-chr8-41024843-2	chr8	41024338	41025338	+	761.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015457)	TTS (NR_015457)	7370.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	24.03	36.4	35.15	25.64	26.12	30.54	92.94	92.86	56.21
Merged-chr6-140614873-3	chr6	140614373	140615373	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7790.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	14.87	12.44	9.25	17.54	7.0	8.04	21.12	14.15	13.74
Merged-chr8-88655488-3	chr8	88654992	88655992	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	8145.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	3.43	15.21	41.62	5.4	12.6	10.45	9.51	12.82	11.24
Merged-chr18-61556020-3	chr18	61555576	61556576	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357498, intron 1 of 10)	intron (NM_001357498, intron 1 of 10)	803.0	NM_146087	93687.0	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	165.9	252.51	201.64	173.4	212.26	241.14	168.99	206.05	172.99
Merged-chr19-37127151-3	chr19	37126594	37127594	+	761.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	B1_Mur1|SINE|Alu	-46749.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	12.59	6.45	1.85	12.14	6.06	8.04	19.01	21.22	11.24
Merged-chr7-80642096-3	chr7	80641585	80642585	+	761.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040343, exon 5 of 5)	non-coding (NR_040343, exon 5 of 5)	6068.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	78.37	67.74	37.0	60.72	47.58	50.64	44.36	49.52	54.33
Merged-chr18-62253996-3	chr18	62253478	62254478	+	761.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70226.0	NM_008313	15562.0	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	3.43	8.75	4.62	14.84	6.06	9.65	10.56	12.82	6.87
Merged-chr5-102071461-3	chr5	102070962	102071962	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1541.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	156.74	151.6	115.62	165.31	127.36	168.8	230.25	223.29	124.91
Merged-chr4-130890276-3	chr4	130889784	130890784	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23050.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	15.45	6.91	7.4	15.52	10.26	12.06	10.56	4.86	6.25
Merged-chr5-108248719-3	chr5	108248196	108249196	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-20201.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	9.15	6.91	11.1	11.47	8.4	5.63	7.39	5.31	15.61
Merged-chr10-14179435-3	chr10	14178923	14179923	+	761.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	213044.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	13.73	13.36	12.95	14.84	15.86	18.49	9.51	7.07	16.86
Merged-chr10-127536707-4	chr10	127536171	127537171	+	761.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2112.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	17.16	12.9	12.95	13.49	3.27	5.63	16.9	14.15	2.5
Merged-chr1-62722441-3	chr1	62721930	62722930	+	761.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	19113.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	42.33	50.23	59.2	29.69	26.59	35.37	21.12	15.48	16.24
Merged-chr1-34312353-2	chr1	34311862	34312862	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120837.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	33.75	23.96	39.77	25.64	20.06	24.11	14.79	11.94	13.74
Merged-chr3-69208812-3	chr3	69208322	69209322	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-13597.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	8.58	12.44	1.85	10.8	6.53	17.68	12.67	13.27	8.74
Merged-chr4-101331277-3	chr4	101330720	101331720	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15807.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	24.03	18.89	11.1	22.27	14.46	20.9	11.62	12.82	6.25
Merged-chr1-152697633-1	chr1	152697133	152698133	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	ORR1D1|LTR|ERVL-MaLR	-52918.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	8.01	8.75	3.7	12.82	9.33	7.23	8.45	12.38	7.49
Merged-chr2-50705127-1	chr2	50704627	50705627	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-204557.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	6.86	7.83	2.77	2.7	6.06	11.25	6.34	3.54	5.0
Merged-chr13-102682805-1	chr13	102682305	102683305	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10742.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	34.32	44.7	35.15	36.43	23.33	47.42	62.31	50.41	28.73
Merged-chrX-168671973-1	chrX	168671473	168672473	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010832, intron 1 of 11)	intron (NM_010832, intron 1 of 11)	1929.0	NM_010832	17692.0	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	MSL complex subunit 3	protein-coding	32.61	58.06	26.82	41.16	42.45	51.44	52.81	66.33	41.84
Merged-chr4-70265401-1	chr4	70264901	70265901	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313762, intron 21 of 33)	intron (NM_001313762, intron 21 of 33)	145034.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	6.29	3.69	0.0	1.35	0.93	0.8	0.0	1.33	5.0
Merged-chr17-10321632-1	chr17	10321132	10322132	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_037588)	TTS (NR_037588)	1713.0	NR_037588	100526796.0	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	26.31	17.51	13.87	26.31	14.0	19.29	27.46	20.34	11.87
Merged-chr14-47367346-1	chr14	47366846	47367846	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6514.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	24.6	17.97	24.97	28.34	23.79	36.97	11.62	9.29	11.24
Merged-chr12-119356907-3	chr12	119356408	119357408	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86502.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	65.21	72.8	54.57	20.24	24.26	28.94	41.19	38.91	18.74
Merged-chr9-47687885-2	chr9	47687399	47688399	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	130309.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	39.47	54.83	31.45	41.16	34.52	47.42	24.29	14.59	18.74
Merged-chr16-30835938-1	chr16	30835438	30836438	+	761.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77|LTR|ERVL	236215.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	8.01	0.92	4.62	3.37	0.47	4.02	2.11	2.65	3.75
Merged-chr1-58740597-1	chr1	58740097	58741097	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 6 of 8)	intron (NM_001355056, intron 6 of 8)	10045.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	22.31	26.73	36.07	33.06	22.39	24.92	25.35	30.07	23.73
Merged-chr6-129238430-3	chr6	129237945	129238945	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040265)	promoter-TSS (NR_040265)	37.0	NR_040266	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	84.09	70.5	57.35	103.23	97.97	56.27	98.23	97.28	43.09
Merged-chr2-148731778-1	chr2	148731278	148732278	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019632, intron 1 of 10)	intron (NM_019632, intron 1 of 10)	642.0	NM_019632	17957.0	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	29.75	18.43	19.42	29.01	25.19	15.27	22.18	24.76	13.74
Merged-chr3-107204318-1	chr3	107203818	107204818	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	17414.0	NM_001111143	229697.0	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	2.86	1.84	0.0	6.07	0.93	3.22	7.39	7.96	7.49
Merged-chr2-170176540-1	chr2	170176040	170177040	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33865.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.72	7.83	11.1	4.72	1.87	11.25	13.73	7.52	9.37
Merged-chr3-89354995-2	chr3	89354495	89355495	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029974, intron 9 of 15)	MamRep564|Unknown|Unknown	-4967.0	NM_009614	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	1.72	2.3	0.92	6.75	3.27	0.8	0.0	0.88	1.25
Merged-chr14-104467973-1	chr14	104467473	104468473	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011143)	promoter-TSS (NM_011143)	26.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	3.43	1.38	0.0	3.37	0.0	1.61	0.0	0.44	0.0
Merged-chr11-75623124-1	chr11	75622624	75623624	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008850, intron 10 of 11)	intron (NM_008850, intron 10 of 11)	-7896.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	13.73	12.44	21.27	14.17	16.79	16.88	11.62	12.38	6.25
Merged-chr1-133418369-3	chr1	133417896	133418896	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	5816.0	NM_011439	20668.0	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	16.02	9.22	3.7	11.47	11.2	19.29	10.56	7.52	1.25
Merged-chr11-32568208-1	chr11	32567708	32568708	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	L1MB1|LINE|L1	34942.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	14.3	9.22	7.4	12.82	7.93	16.88	9.51	12.38	7.49
Merged-chr6-129545303-1	chr6	129544803	129545803	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12019.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	10.3	7.83	1.85	19.57	2.8	4.02	1.06	0.0	3.75
Merged-chr10-8061932-1	chr10	8061432	8062432	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105809.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	10.87	14.28	3.7	14.17	6.06	4.82	12.67	8.4	10.62
Merged-chr17-69349445-1	chr17	69348945	69349945	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33730.0	NM_001356283	22666.0	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	2.29	3.69	3.7	2.02	6.06	1.61	0.0	3.54	0.0
Merged-chr17-23551037-2	chr17	23550538	23551538	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126484, intron 1 of 1)	intron (NR_126484, intron 1 of 1)	239.0	NR_126484	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	69.79	64.97	57.35	60.72	55.98	70.73	54.92	33.6	37.47
Merged-chr8-25110175-2	chr8	25109668	25110668	+	761.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_155282)	TTS (NR_155282)	7989.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	37.76	35.02	20.35	34.41	29.39	24.11	23.24	40.68	35.6
Merged-chr12-100728790-1	chr12	100728290	100729290	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3670.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	30.89	25.8	11.1	22.94	20.99	19.29	13.73	16.36	27.48
Merged-chr10-22141070-2	chr10	22140563	22141563	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254744, intron 1 of 1)	MuRRS-int|LTR|ERV1	8207.0	NM_001254744	319887.0	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	2.86	4.15	3.7	4.72	2.33	9.65	7.39	2.65	1.25
Merged-chr9-63006234-2	chr9	63005732	63006732	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25353.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	16.02	34.1	39.77	19.57	20.53	45.01	28.52	30.95	25.61
Merged-chr5-99364331-1	chr5	99363831	99364831	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-111404.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	85.24	107.36	81.4	166.66	155.35	174.42	158.43	149.45	84.94
Merged-chr11-95805852-1	chr11	95805352	95806352	+	761.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18648.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	1.14	2.3	7.4	5.4	1.4	3.22	6.34	1.33	0.0
Merged-chr17-24162957-3	chr17	24162459	24163459	+	760.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001361535)	TTS (NM_001361535)	774.0	NM_172935	245847.0	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	132.72	138.7	119.32	160.58	188.94	157.54	145.75	111.87	82.44
Merged-chr7-67479390-3	chr7	67478892	67479892	+	760.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106534.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.3	8.29	14.8	10.12	6.53	4.82	3.17	6.63	5.0
Merged-chr2-170308118-3	chr2	170307612	170308612	+	760.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48249.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	5.72	6.91	2.77	8.1	2.33	1.61	8.45	4.42	6.87
Merged-chr11-17004362-2	chr11	17003877	17004877	+	760.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	intron (NM_019549, intron 1 of 9)	4341.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	310.05	293.52	182.22	309.02	263.11	244.35	229.19	293.16	148.64
Merged-chr16-17131586-3	chr16	17131061	17132061	+	760.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022324, intron 2 of 2)	intron (NM_022324, intron 2 of 2)	822.0	NM_022324	64136.0	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	70.36	49.76	24.05	66.12	43.39	38.58	72.88	46.87	14.99
Merged-chr1-180289952-3	chr1	180289445	180290445	+	760.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33645.0	NM_001128605	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	12.59	5.53	9.25	6.07	8.4	24.92	10.56	4.86	3.75
Merged-chr13-104285108-3	chr13	104284603	104285603	+	760.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2732.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	17.16	14.75	11.1	13.49	14.93	7.23	23.24	15.03	9.99
Merged-chr2-129565149-2	chr2	129564578	129565578	+	760.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27761.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	10.87	11.06	2.77	21.59	4.2	4.82	10.56	10.17	8.12
Merged-chr14-65113922-4	chr14	65113404	65114404	+	760.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-15798.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	33.18	25.34	29.6	24.96	24.26	36.97	39.08	37.58	19.98
Merged-chr15-96666085-3	chr15	96665589	96666589	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23176.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.15	7.83	3.7	12.14	10.26	4.02	10.56	11.5	5.0
Merged-chr2-32450519-3	chr2	32450025	32451025	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194335)	promoter-TSS (NM_194335)	68.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	84.09	94.0	89.72	93.11	54.11	83.59	105.62	122.92	90.56
Merged-chr19-29571265-3	chr19	29570768	29571768	+	760.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081319, intron 8 of 25)	MTEb|LTR|ERVL-MaLR	48986.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	10.3	15.67	30.52	13.49	7.46	12.86	15.84	26.53	14.99
Merged-chr4-149309469-2	chr4	149308965	149309965	+	760.825012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1732.0	NM_001290995	16561.0	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	14.87	7.83	11.1	12.82	6.06	12.86	9.51	7.07	16.86
Merged-chr13-28858185-2	chr13	28857687	28858687	+	760.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	27235.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	8.58	2.76	0.0	8.77	0.93	1.61	1.06	3.98	7.49
Merged-chr5-44238411-1	chr5	44237911	44238911	+	760.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11805.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	5.72	2.3	7.4	3.37	4.67	4.82	5.28	1.77	3.75
Merged-chr17-35915759-3	chr17	35915263	35916263	+	760.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361455, intron 1 of 5)	intron (NM_001361455, intron 1 of 5)	677.0	NM_001361455	66973.0	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik|MRP-S18-2|S18mt-b	mitochondrial ribosomal protein S18B	protein-coding	152.74	134.55	113.77	115.38	83.51	102.08	133.08	157.41	74.94
Merged-chr9-37540815-3	chr9	37540316	37541316	+	760.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020518, intron 3 of 6)	intron (NM_020518, intron 3 of 6)	1561.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	4.58	5.53	7.4	4.05	2.8	4.82	5.28	2.65	2.5
Merged-chr16-90738315-3	chr16	90737818	90738818	+	760.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029844)	promoter-TSS (NM_029844)	-6.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	14.3	7.83	20.35	21.59	15.39	7.23	13.73	18.57	3.75
Merged-chr8-36184261-1	chr8	36183761	36184761	+	760.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28251.0	NR_151736	330738.0	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	4.58	2.3	1.85	3.37	0.47	0.8	2.11	1.77	2.5
Merged-chr4-59464417-2	chr4	59463923	59464923	+	760.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger17c|DNA|TcMar-Tigger	-25790.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	37.76	39.63	37.92	49.25	47.12	40.99	41.19	31.84	26.23
Merged-chr6-108246592-3	chr6	108246072	108247072	+	760.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	33476.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	14.3	12.44	8.32	10.12	6.06	4.82	8.45	3.1	5.0
Merged-chr10-88122762-2	chr10	88122293	88123293	+	760.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029249, intron 6 of 10)	intron (NM_029249, intron 6 of 10)	24148.0	NM_029249	75317.0	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	30.89	25.34	18.5	22.27	23.79	27.33	5.28	3.54	6.25
Merged-chr10-99165124-3	chr10	99164628	99165628	+	760.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	56993.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	12.01	21.2	8.32	24.96	13.53	20.9	15.84	11.05	19.36
Merged-chr12-71007045-3	chr12	71006538	71007538	+	760.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	Lx8|LINE|L1	8785.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	41.76	64.51	28.67	48.58	34.52	39.39	40.14	43.33	38.1
Merged-chr2-25626154-1	chr2	25625654	25626654	+	760.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007995, intron 6 of 9)	intron (NM_007995, intron 6 of 9)	1820.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	34.9	23.04	31.45	28.34	23.33	59.48	51.75	26.53	16.86
Merged-chr13-74166912-1	chr13	74166412	74167412	+	760.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081060)	TTS (NM_001081060)	41788.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	2.86	3.69	11.1	12.82	6.53	9.65	3.17	3.98	3.75
Merged-chr8-126692414-2	chr8	126691914	126692914	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98978.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	8.01	4.15	11.1	8.77	6.53	5.63	8.45	4.86	8.74
Merged-chr7-118843239-2	chr7	118842738	118843738	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168220, exon 5 of 5)	3' UTR (NM_001168220, exon 5 of 5)	12375.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	11.44	7.37	25.9	6.75	6.06	12.06	6.34	5.31	8.74
Merged-chr8-58212453-2	chr8	58211952	58212952	+	760.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175032, intron 4 of 11)	ORR1E|LTR|ERVL-MaLR	488344.0	NM_001177534	100271928.0	Mm.484123	NM_001177534		Gm15881	-	predicted gene 15881	protein-coding	3.43	3.69	0.0	5.4	1.4	8.84	6.34	6.63	2.5
Merged-chr3-96284649-2	chr3	96284162	96285162	+	760.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 5 of 5)	intron (NM_010186, intron 5 of 5)	9307.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	8.58	5.07	7.4	7.42	2.8	6.43	7.39	2.21	6.25
Merged-chr17-28485652-2	chr17	28485158	28486158	+	760.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 1 of 10)	CpG	491.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	42.33	19.81	37.92	53.3	34.99	46.62	39.08	30.51	18.11
Merged-chrX-37049002-2	chrX	37048535	37049535	+	760.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173779, exon 1 of 1)	exon (NM_173779, exon 1 of 1)	190.0	NM_173779	245381.0	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	2.29	1.84	1.85	4.72	0.0	0.0	2.11	0.0	3.75
Merged-chr1-23279944-2	chr1	23279440	23280440	+	760.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7671.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	2.29	5.53	7.4	4.72	7.0	4.82	3.17	2.21	2.5
Merged-chr5-139732966-3	chr5	139732464	139733464	+	760.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	3369.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	33.18	27.65	38.85	24.29	13.06	10.45	65.48	52.18	33.72
Merged-chr7-95830070-3	chr7	95829571	95830571	+	760.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-341173.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	9.72	11.98	12.95	29.01	26.59	20.09	15.84	2.65	6.25
Merged-chr1-9745075-3	chr1	9744583	9745583	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173443, intron 1 of 2)	intron (NM_173443, intron 1 of 2)	-2565.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	50.91	67.74	38.85	49.25	59.71	32.96	80.27	72.07	31.85
Merged-chr19-56681389-3	chr19	56680821	56681821	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41051.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	12.01	4.61	1.85	13.49	10.73	9.65	7.39	8.4	6.25
Merged-chr7-113518644-3	chr7	113518140	113519140	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	MIR3|SINE|MIR	4806.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	38.33	55.29	34.22	42.51	32.66	40.19	38.02	33.6	28.73
Merged-chr9-21221714-3	chr9	21221228	21222228	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	17604.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	31.46	41.47	20.35	67.47	62.98	50.64	71.82	64.11	29.35
Merged-chr14-75187019-3	chr14	75186514	75187514	+	760.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	50589.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	77.23	68.2	52.72	64.77	41.05	90.83	82.38	66.77	54.33
Merged-chr16-73591571-3	chr16	73591071	73592071	+	760.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	750496.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	12.01	8.29	1.85	25.64	14.0	27.33	24.29	9.73	21.23
Merged-chr13-103703598-2	chr13	103703093	103704093	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	4040.0	NR_136924	102632492.0	Mm.383874	NR_136924	ENSMUSG00000114206	Gm30551	Gm30710	predicted gene, 30551	ncRNA	0.57	2.3	2.77	3.37	1.87	0.8	4.22	0.44	1.87
Merged-chr2-59155543-2	chr2	59155047	59156047	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	Lx4A|LINE|L1	5136.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	6.29	3.69	1.85	8.77	7.93	4.82	4.22	4.42	2.5
Merged-chr5-43039650-1	chr5	43039150	43040150	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-193813.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	3.43	1.84	7.4	4.05	0.0	4.82	4.22	1.33	7.49
Merged-chr10-80156176-3	chr10	80155671	80156671	+	760.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347117, intron 7 of 7)	intron (NM_001347117, intron 7 of 7)	6489.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	5.72	6.45	11.1	5.4	6.53	26.53	15.84	8.4	16.86
Merged-chr3-136322781-2	chr3	136322276	136323276	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	3290.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	84.66	83.86	45.32	75.57	70.91	51.44	65.48	54.39	38.1
Merged-chr1-91282762-2	chr1	91282262	91283262	+	760.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 9 of 10)	intron (NM_001355764, intron 9 of 10)	-15576.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	14.3	17.05	37.0	20.92	13.06	14.47	14.79	7.07	10.62
Merged-chr7-129339420-2	chr7	129338912	129339912	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 5 of 6)	intron (NM_001080963, intron 5 of 6)	82318.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	6.86	4.15	3.7	4.05	2.33	1.61	2.11	3.98	7.49
Merged-chr12-78864339-1	chr12	78863839	78864839	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026114, intron 1 of 7)	intron (NM_026114, intron 1 of 7)	2267.0	NM_026114	13665.0	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	32.04	44.7	25.9	40.48	34.06	57.87	55.98	60.58	43.72
Merged-chr1-131980744-1	chr1	131980244	131981244	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	10135.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	21.74	32.25	22.2	20.24	18.19	51.44	23.24	14.15	22.48
Merged-chr17-17375775-2	chr17	17375263	17376263	+	760.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025934, intron 1 of 9)	intron (NM_025934, intron 1 of 9)	1431.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	17.73	20.27	14.8	8.1	7.46	9.65	47.53	37.58	12.49
Merged-chr7-100533549-3	chr7	100533063	100534063	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3537.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	76.66	119.8	94.35	84.34	75.11	67.52	90.83	103.47	71.82
Merged-chr19-32486511-3	chr19	32486005	32487005	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010799, exon 1 of 5)	exon (NM_010799, exon 1 of 5)	736.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	22.31	22.12	24.97	30.36	39.19	28.94	28.52	22.11	9.37
Merged-chr9-116101424-3	chr9	116100919	116101919	+	760.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029575, intron 5 of 6)	intron (NM_029575, intron 5 of 6)	73944.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	72.08	107.82	63.82	105.93	94.23	109.32	54.92	81.8	56.83
Merged-chr2-180051198-3	chr2	180050701	180051701	+	760.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178750, intron 1 of 10)	intron (NM_178750, intron 1 of 10)	8718.0	NM_178750	269397.0	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	2.29	3.69	11.1	2.7	0.47	6.43	1.06	0.0	1.87
Merged-chr12-79208896-2	chr12	79208378	79209378	+	760.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030017)	promoter-TSS (NM_030017)	-35.0	NM_001313971	77974.0	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	3.43	2.3	3.7	6.07	2.33	6.43	5.28	3.1	5.0
Merged-chr9-120868549-2	chr9	120868085	120869085	+	760.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46665.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	10.3	5.53	11.1	8.1	4.67	8.04	2.11	3.1	1.25
Merged-chr11-87750160-3	chr11	87749673	87750673	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-6691.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	288.89	252.05	194.24	174.75	191.27	172.01	270.38	327.65	204.22
Merged-chr11-48913804-3	chr11	48913307	48914307	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045540, intron 2 of 2)	intron (NM_001045540, intron 2 of 2)	-11655.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	12.59	9.68	8.32	9.45	9.8	11.25	6.34	8.84	5.62
Merged-chr8-94861491-1	chr8	94860991	94861991	+	760.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009090, intron 4 of 8)	intron (NM_009090, intron 4 of 8)	4041.0	NM_009090	20021.0	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	3.43	4.15	6.47	0.0	0.93	4.02	5.28	3.1	1.25
Merged-chr2-84660483-3	chr2	84659981	84660981	+	760.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145100, intron 2 of 4)	intron (NM_001145100, intron 2 of 4)	1402.0	NM_001145100	100270744.0	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718	BTB (POZ) domain containing 18	protein-coding	9.15	6.91	14.8	10.8	5.13	6.43	12.67	7.96	12.49
Merged-chr6-114916484-3	chr6	114916005	114917005	+	760.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5316.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	26.31	22.12	19.42	34.41	21.46	37.78	49.64	34.05	20.61
Merged-chr17-25570837-3	chr17	25570348	25571348	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045176)	promoter-TSS (NR_045176)	37.0	NR_045176	72834.0	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	5.15	2.3	1.85	4.05	2.8	0.0	2.11	0.88	3.75
Merged-chr13-113542649-3	chr13	113542174	113543174	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39830.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	6.29	8.75	2.77	8.1	2.33	3.22	6.34	3.98	4.37
Merged-chr5-53194613-3	chr5	53194118	53195118	+	760.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172710, intron 2 of 23)	intron (NM_172710, intron 2 of 23)	18834.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	32.04	36.4	32.37	38.46	27.06	32.15	21.12	16.8	14.99
Merged-chr6-72115051-3	chr6	72114558	72115558	+	760.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	7882.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	50.91	48.38	34.22	23.62	29.39	27.33	40.14	34.05	39.35
Merged-chr11-79863614-1	chr11	79863114	79864114	+	760.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98773.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.43	4.61	4.62	7.42	7.46	9.65	6.34	6.19	6.25
Merged-chr5-66246124-2	chr5	66245617	66246617	+	760.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13781.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	1.72	0.0	2.77	4.72	1.87	2.41	1.06	0.88	2.5
Merged-chr15-80091261-3	chr15	80090754	80091754	+	760.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-80.0	NM_009303	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	20.59	11.98	1.85	44.53	24.26	4.82	19.01	12.82	5.0
Merged-chr10-34187944-1	chr10	34187444	34188444	+	760.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	19607.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	70.36	94.0	60.12	76.24	72.78	57.87	77.1	67.21	66.82
Merged-chr4-140714003-3	chr4	140713500	140714500	+	760.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173867, intron 7 of 12)	intron (NM_173867, intron 7 of 12)	12527.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	3.43	1.84	1.85	2.7	3.27	7.23	1.06	3.1	2.5
Merged-chr16-33348171-2	chr16	33347673	33348673	+	760.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32563.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	61.78	75.11	61.05	55.33	48.98	60.28	54.92	82.69	53.71
Merged-chr4-33246925-3	chr4	33246401	33247401	+	760.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033225, intron 1 of 1)	intron (NM_001033225, intron 1 of 1)	1886.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	301.47	354.8	158.17	213.89	239.32	208.98	310.52	405.47	152.38
Merged-chr7-90133446-3	chr7	90132921	90133921	+	760.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	3208.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	172.19	391.67	147.99	168.0	277.11	157.54	171.1	256.01	110.54
Merged-chr7-96630647-2	chr7	96630137	96631137	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 5 of 32)	RLTR45|LTR|ERVK	170912.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	5.72	10.14	12.95	6.07	6.06	5.63	6.34	3.98	7.49
Merged-chr3-151294187-2	chr3	151293689	151294689	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143693.0	NM_133222	170757.0	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	15.45	21.66	7.4	14.17	16.33	12.86	8.45	3.1	4.37
Merged-chr7-89979731-2	chr7	89979239	89980239	+	760.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021876, intron 1 of 11)	intron (NM_021876, intron 1 of 11)	1237.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	127.57	160.35	132.27	106.61	118.96	119.76	123.57	177.31	91.18
Merged-chr17-71595229-3	chr17	71594723	71595723	+	760.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027953, intron 1 of 2)	intron (NR_027953, intron 1 of 2)	3058.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	29.75	20.27	24.97	45.21	27.99	20.9	19.01	14.59	7.49
Merged-chr13-108135929-3	chr13	108135445	108136445	+	760.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	22680.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	13.16	11.52	18.5	11.47	11.2	10.45	5.28	3.98	6.25
Merged-chr17-28967289-3	chr17	28966784	28967784	+	760.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356299, exon 7 of 7)	3' UTR (NM_001356299, exon 7 of 7)	14068.0	NM_025888	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	17.16	24.42	30.52	25.64	20.53	18.49	15.84	14.15	11.24
Merged-chr5-134227754-3	chr5	134227247	134228247	+	760.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010876, intron 2 of 10)	intron (NM_010876, intron 2 of 10)	1878.0	NM_001286037	17969.0	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	36.04	31.79	32.37	48.58	29.86	27.33	47.53	39.8	28.73
Merged-chr7-107566026-1	chr7	107565526	107566526	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1407.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	17.73	33.18	35.15	16.87	11.66	17.68	20.07	22.11	17.49
Merged-chr6-98531730-1	chr6	98531230	98532230	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188976.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.0	1.38	7.4	1.35	2.33	0.0	1.06	3.98	8.74
Merged-chr1-138291606-1	chr1	138291106	138292106	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17868.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	17.73	15.67	8.32	24.29	14.93	29.74	24.29	10.17	9.37
Merged-chr12-28733478-1	chr12	28732978	28733978	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161410, intron 3 of 11)	RLTR13B1|LTR|ERVK	16916.0	NM_001161410	217449.0	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	41.19	70.04	37.0	51.95	50.85	85.2	130.97	134.86	71.82
Merged-chr16-49800456-1	chr16	49799956	49800956	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55198.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	4.58	5.53	0.0	8.1	6.06	9.65	8.45	11.05	5.0
Merged-chr3-138114366-1	chr3	138113866	138114866	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355052, intron 11 of 21)	intron (NM_001355052, intron 11 of 21)	17287.0	NM_008642	17777.0	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	6.29	5.07	9.25	16.87	9.8	12.86	3.17	1.33	2.5
Merged-chr12-86945317-1	chr12	86944817	86945817	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1724.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	6.86	7.37	0.0	7.42	4.67	1.61	3.17	5.31	2.5
Merged-chr6-46376535-2	chr6	46376026	46377026	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 11 of 23)	intron (NM_001004357, intron 11 of 23)	-867870.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.29	2.3	7.4	4.05	5.6	0.0	4.22	1.77	8.74
Merged-chr10-78412407-2	chr10	78411943	78412943	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010925, intron 1 of 12)	intron (NM_010925, intron 1 of 12)	600.0	NM_010925	18114.0	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	196.21	246.52	90.65	178.13	229.99	127.0	186.94	149.89	107.42
Merged-chr6-136692689-1	chr6	136692189	136693189	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30796.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	11.44	8.75	2.77	10.12	2.33	9.65	2.11	4.86	1.25
Merged-chr17-67974948-1	chr17	67974448	67975448	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172964, intron 1 of 17)	intron (NM_172964, intron 1 of 17)	-24008.0	NM_001347410	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	11.44	5.53	16.65	2.02	2.8	3.22	1.06	0.88	1.87
Merged-chr2-79695393-1	chr2	79694893	79695893	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12387.0	NM_172420	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	22.31	5.99	12.02	22.27	9.33	11.25	12.67	12.82	7.49
Merged-chr17-88043038-1	chr17	88042538	88043538	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	21894.0	NM_001348248	225055.0	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	78.94	55.29	59.2	74.89	82.57	42.6	111.96	105.24	47.46
Merged-chr6-66538067-1	chr6	66537567	66538567	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355624, intron 3 of 5)	intron (NM_001355624, intron 3 of 5)	2846.0	NM_001355624	56150.0	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	7.44	9.22	8.32	7.42	9.33	7.23	14.79	15.03	5.62
Merged-chr2-52961628-2	chr2	52961136	52962136	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	Lx9|LINE|L1	103768.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	45.76	33.18	26.82	37.78	28.46	42.6	31.69	30.51	18.74
Merged-chr7-24112601-1	chr7	24112101	24113101	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021307, intron 1 of 4)	intron (NM_021307, intron 1 of 4)	281.0	NM_021307	57745.0	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	5.72	11.52	5.55	9.45	6.06	8.04	11.62	1.33	4.37
Merged-chr11-120341836-1	chr11	120341336	120342336	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	5577.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	2.86	2.3	11.1	4.05	3.27	3.22	3.17	3.1	3.75
Merged-chr1-13297414-1	chr1	13296914	13297914	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	RSINE1|SINE|B4	75015.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	16.02	16.13	34.22	18.22	12.13	36.97	16.9	18.57	18.74
Merged-chr11-60900712-1	chr11	60900212	60901212	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13080.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	2.86	6.91	9.25	15.52	7.0	6.43	11.62	9.29	5.62
Merged-chr12-40789756-1	chr12	40789256	40790256	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 31 of 52)	intron (NM_172803, intron 31 of 52)	-234334.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	7.44	12.44	26.82	14.84	16.79	24.92	12.67	8.84	3.12
Merged-chr9-116331001-1	chr9	116330501	116331501	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141821.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	6.29	3.23	3.7	8.1	3.27	9.65	2.11	2.21	5.62
Merged-chr6-6263454-1	chr6	6262954	6263954	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	MLT1B|LTR|ERVL-MaLR	14795.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	2.29	4.15	1.85	3.37	1.87	6.43	0.0	4.86	0.0
Merged-chr7-29993528-1	chr7	29993028	29994028	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033355, intron 4 of 9)	intron (NM_001033355, intron 4 of 9)	9573.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	21.74	23.04	11.1	42.51	36.85	22.51	0.0	2.21	7.49
Merged-chr2-152740593-3	chr2	152740095	152741095	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4344.0	NM_001355113	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	47.48	29.49	34.22	20.92	22.86	33.76	17.96	33.6	15.61
Merged-chr11-83192255-1	chr11	83191755	83192755	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	925.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	26.89	17.97	15.72	28.34	20.99	21.7	41.19	46.43	18.74
Merged-chr8-128452088-1	chr8	128451588	128452588	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	92847.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	20.02	14.28	27.75	16.87	14.0	19.29	22.18	5.31	13.12
Merged-chr2-174335883-3	chr2	174335388	174336388	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077507, intron 2 of 10)	intron (NM_001077507, intron 2 of 10)	5799.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	22.88	25.34	19.42	29.01	21.46	21.7	30.63	34.93	16.24
Merged-chr11-59248301-1	chr11	59247801	59248801	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009522, exon 4 of 4)	3' UTR (NM_009522, exon 4 of 4)	-20034.0	NM_007476	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	2.86	1.84	4.62	4.72	2.33	0.0	0.0	0.88	0.0
Merged-chr9-110889990-1	chr9	110889490	110890490	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153354, intron 12 of 25)	intron (NR_153354, intron 12 of 25)	9668.0	NM_001146060	235633.0	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	9.15	8.29	13.87	6.75	5.6	14.47	7.39	3.98	7.49
Merged-chr3-79128968-1	chr3	79128468	79129468	+	760.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	15919.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	58.35	70.5	74.92	52.63	44.32	46.62	119.35	99.93	44.97
Merged-chr5-136979936-1	chr5	136979436	136980436	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6968.0	NM_001310747	70103.0	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	4.0	3.69	9.25	5.4	6.06	28.13	7.39	6.63	8.74
Merged-chr3-98050856-1	chr3	98050356	98051356	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	37318.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	13.16	12.44	21.27	16.87	8.4	21.7	8.45	17.69	4.37
Merged-chr16-16536637-1	chr16	16536137	16537137	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	Lx7|LINE|L1	-9226.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	3.43	3.69	11.1	5.4	9.33	7.23	8.45	4.42	3.75
Merged-chr13-28885300-1	chr13	28884800	28885800	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045053, exon 1 of 9)	non-coding (NR_045053, exon 1 of 9)	122.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	1.14	3.69	2.77	4.05	2.8	3.22	2.11	0.44	0.0
Merged-chr10-10461716-2	chr10	10461207	10462207	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	10607.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	18.88	11.52	17.57	20.24	22.39	16.08	86.61	72.52	38.72
Merged-chr4-106911774-1	chr4	106911274	106912274	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_023672, exon 1 of 18)	5' UTR (NM_023672, exon 1 of 18)	304.0	NM_023672	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	10.87	9.22	3.7	25.64	7.0	23.31	22.18	3.1	3.75
Merged-chr6-84096021-2	chr6	84095521	84096521	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 17 of 54)	intron (NM_001077694, intron 17 of 54)	76635.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	1.14	0.92	0.0	2.02	7.0	6.43	4.22	2.21	1.25
Merged-chr2-152904524-1	chr2	152904024	152905024	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_001081044	228785.0	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	5.72	1.38	5.55	6.75	1.4	6.43	7.39	1.77	5.0
Merged-chr5-110780123-1	chr5	110779623	110780623	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152254)	TTS (NR_152254)	473.0	NM_019700	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	112.12	52.07	66.6	112.0	61.58	67.52	117.24	66.33	37.47
Merged-chr6-72382702-1	chr6	72382202	72383202	+	760.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-2234.0	NM_016872	53620.0	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	37.18	36.4	48.1	34.41	42.92	35.37	51.75	44.66	33.1
Merged-chr1-33909245-1	chr1	33908745	33909745	+	760.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	1020.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	73.22	90.31	64.75	29.69	21.46	20.9	29.57	20.78	12.49
Merged-chr7-88280369-3	chr7	88279820	88280820	+	759.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 1 of 6)	intron (NM_009982, intron 1 of 6)	2235.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	128.71	131.32	89.72	99.18	80.24	122.98	136.25	178.19	105.55
Merged-chr3-88245923-3	chr3	88245369	88246369	+	759.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021375, exon 5 of 10)	exon (NM_021375, exon 5 of 10)	8815.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.0	3.23	3.7	4.72	0.0	0.8	1.06	0.88	2.5
Merged-chr17-33969121-2	chr17	33968624	33969624	+	759.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	9667.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	18.31	7.83	11.1	6.75	6.53	9.65	13.73	12.82	7.49
Merged-chr6-5052559-3	chr6	5052053	5053053	+	759.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 3 of 15)	ORR1F|LTR|ERVL-MaLR	141393.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	17.16	18.43	11.1	18.22	13.53	13.66	16.9	11.94	11.24
Merged-chr13-119596478-2	chr13	119595979	119596979	+	759.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	PB1D7|SINE|Alu	-27340.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.58	1.38	2.77	4.72	3.27	10.45	1.06	3.98	18.11
Merged-chr14-9487668-3	chr14	9487167	9488167	+	759.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-396428.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	8.58	16.59	11.1	12.82	7.93	14.47	8.45	5.31	5.0
Merged-chr2-124657603-2	chr2	124657104	124658104	+	759.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199241, intron 8 of 17)	intron (NM_199241, intron 8 of 17)	4023.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	28.03	22.58	20.35	15.52	16.79	35.37	25.35	21.22	21.23
Merged-chrX-10786577-2	chrX	10786081	10787081	+	759.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69216.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	4.0	3.23	0.0	8.1	8.4	3.22	4.22	5.75	1.25
Merged-chr12-85526262-3	chr12	85525776	85526776	+	759.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	52386.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	16.02	7.37	3.7	20.92	9.33	11.25	19.01	6.19	1.87
Merged-chr6-43260889-2	chr6	43260383	43261383	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-4761.0	NM_133674	54324.0	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	20.02	23.04	12.95	8.77	11.66	8.84	15.84	11.5	16.86
Merged-chr15-9714844-2	chr15	9714334	9715334	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305042, intron 8 of 36)	intron (NM_001305042, intron 8 of 36)	34034.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	8.58	6.45	1.85	8.77	5.6	4.02	2.11	7.52	3.75
Merged-chr4-58440548-2	chr4	58440048	58441048	+	759.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037278)	TTS (NR_037278)	550.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	9.72	3.69	12.95	5.4	1.87	8.84	20.07	7.07	11.87
Merged-chr19-47395003-2	chr19	47394503	47395503	+	759.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	intron (NM_008018, intron 3 of 14)	69408.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	18.88	6.91	15.72	17.54	8.86	8.04	14.79	8.84	6.87
Merged-chr3-152474770-3	chr3	152474266	152475266	+	759.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081277, intron 12 of 13)	intron (NM_001081277, intron 12 of 13)	78082.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	5.15	4.15	0.0	2.7	2.8	3.22	4.22	1.33	1.25
Merged-chr4-132310055-3	chr4	132309566	132310566	+	759.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_034046)	promoter-TSS (NR_034046)	113.0	NR_034050	100217418.0	Mm.258912	NR_034050	ENSMUSG00000064604	Snora44	MBI-64	small nucleolar RNA, H/ACA box 44	snoRNA	41.19	36.86	43.47	28.34	19.13	24.92	36.97	36.26	21.23
Merged-chr19-47512058-3	chr19	47511554	47512554	+	759.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045322)	promoter-TSS (NR_045322)	-928.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	12.59	8.75	7.4	22.94	15.86	36.97	17.96	10.61	11.24
Merged-chr5-21387557-2	chr5	21387044	21388044	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	14871.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	21.74	36.4	15.72	24.96	20.06	22.51	44.36	38.03	16.86
Merged-chr8-107576933-2	chr8	107576434	107577434	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11548.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	5.72	4.15	3.7	4.05	3.73	1.61	5.28	2.65	3.12
Merged-chr15-25135686-2	chr15	25135201	25136201	+	759.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	278063.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	4.58	1.38	3.7	6.07	2.8	0.0	7.39	0.0	2.5
Merged-chr3-126693570-2	chr3	126693053	126694053	+	759.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 3 of 18)	intron (NM_001025438, intron 3 of 18)	96602.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	103.54	139.16	74.92	75.57	84.9	66.71	95.06	102.58	49.34
Merged-chr11-75167608-2	chr11	75167103	75168103	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010430, intron 1 of 1)	CpG	549.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	40.04	37.32	35.15	31.04	32.66	49.03	49.64	45.54	27.48
Merged-chr2-128389248-1	chr2	128388748	128389748	+	759.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	40103.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	23.45	20.27	16.65	32.39	21.46	37.78	43.3	23.88	22.48
Merged-chr7-127392382-3	chr7	127391886	127392886	+	759.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198011, exon 3 of 3)	exon (NM_198011, exon 3 of 3)	1235.0	NM_198011	101604.0	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	30.32	16.13	13.87	22.94	10.26	16.08	8.45	15.03	14.36
Merged-chr13-37954478-3	chr13	37953965	37954965	+	759.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39743.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	15.45	9.68	6.47	10.8	3.73	18.49	5.28	6.63	14.36
Merged-chr6-134794384-3	chr6	134793879	134794879	+	759.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151454, intron 1 of 1)	intron (NR_151454, intron 1 of 1)	-1271.0	NR_151455	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	13.73	12.44	3.7	7.42	3.73	8.84	9.51	4.86	8.12
Merged-chr9-116085698-1	chr9	116085198	116086198	+	759.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89665.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	21.17	27.19	15.72	35.76	30.79	45.01	7.39	15.03	16.24
Merged-chrX-157585812-3	chrX	157585314	157586314	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172307, intron 3 of 10)	intron (NM_172307, intron 3 of 10)	12901.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	17.73	23.5	11.1	18.22	27.99	20.09	15.84	15.03	27.48
Merged-chr4-137179018-1	chr4	137178518	137179518	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13952.0	NR_040443	100503595.0	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	-	predicted gene 13003	ncRNA	6.29	4.15	7.4	1.35	1.87	3.22	4.22	0.88	1.87
Merged-chr7-80299728-3	chr7	80299229	80300229	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145150, intron 1 of 13)	B1_Mur4|SINE|Alu	5278.0	NM_001285998	233406.0	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	29.17	24.88	14.8	18.89	16.79	16.08	13.73	20.78	27.48
Merged-chr17-35021354-3	chr17	35020864	35021864	+	759.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347347, intron 8 of 16)	intron (NM_001347347, intron 8 of 16)	4785.0	NM_001347347	27762.0	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	5.72	5.53	11.1	2.02	1.4	6.43	15.84	5.75	3.75
Merged-chr4-105306206-2	chr4	105305696	105306696	+	759.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148849.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.29	8.75	7.4	13.49	13.06	4.82	6.34	7.52	10.62
Merged-chr18-64954228-2	chr18	64953729	64954729	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	66473.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.29	2.76	5.55	2.7	3.27	0.8	4.22	3.54	6.25
Merged-chr15-72549529-2	chr15	72549030	72550030	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3251.0	NM_001033876	223604.0	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	4.58	3.23	0.0	1.35	0.0	1.61	0.0	2.21	2.5
Merged-chr14-122814347-2	chr14	122813844	122814844	+	759.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-98686.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	5.72	5.99	5.55	9.45	7.0	6.43	7.39	3.1	3.12
Merged-chr13-37666554-3	chr13	37666091	37667091	+	759.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-159447.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.58	12.44	5.55	17.54	10.26	16.88	7.39	2.65	11.24
Merged-chr4-16196833-3	chr4	16196339	16197339	+	759.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045765, intron 2 of 6)	intron (NR_045765, intron 2 of 6)	32729.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	20.59	23.04	16.65	10.8	18.19	12.06	34.85	22.55	28.73
Merged-chr3-59127138-3	chr3	59126653	59127653	+	759.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	Charlie1|DNA|hAT-Charlie	3609.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	21.74	17.97	20.35	10.8	9.33	14.47	8.45	12.38	8.74
Merged-chr13-8871794-1	chr13	8871294	8872294	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172445)	promoter-TSS (NM_172445)	-58.0	NM_001039388	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	50.34	36.86	59.2	41.16	49.92	80.38	42.25	48.64	39.35
Merged-chr15-62040459-2	chr15	62040048	62041048	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	1291.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	190.49	153.44	76.77	123.47	132.49	100.47	216.52	217.55	76.19
Merged-chr11-85842142-3	chr11	85841620	85842620	+	759.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009324)	TTS (NM_009324)	9505.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	10.87	4.61	1.85	18.22	5.13	4.82	3.17	1.33	1.25
Merged-chr13-42337230-2	chr13	42336730	42337730	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35754.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	2.29	3.69	3.7	2.7	4.2	0.0	1.06	1.77	0.62
Merged-chr4-107315175-1	chr4	107314675	107315675	+	759.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205156, intron 1 of 8)	L1MEc|LINE|L1	812.0	NM_001205156	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	8.01	9.68	11.1	11.47	9.8	6.43	33.8	26.09	24.36
Merged-chr3-41575362-2	chr3	41574867	41575867	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130186, intron 1 of 10)	intron (NM_001130186, intron 1 of 10)	10487.0	NM_001130186	269424.0	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	29.75	17.51	26.82	28.34	23.33	37.78	27.46	33.6	13.74
Merged-chr7-16047248-2	chr7	16046737	16047737	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24608.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	98.97	111.97	143.37	112.68	83.51	131.82	165.82	118.94	113.04
Merged-chr17-80621091-2	chr17	80620545	80621545	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290345, intron 16 of 33)	ID_B1|SINE|B4	-43232.0	NM_001360144	381113.0	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	2.86	4.61	1.85	3.37	5.6	4.82	4.22	1.77	2.5
Merged-chr17-23982352-2	chr17	23981849	23982849	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7119.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	114.98	114.27	54.57	108.63	73.71	77.97	183.78	225.51	106.17
Merged-chr19-55681457-2	chr19	55680961	55681961	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	MER58B|DNA|hAT-Charlie	20743.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	13.16	16.13	21.27	10.8	6.53	21.7	24.29	20.78	2.5
Merged-chr9-66831533-1	chr9	66831033	66832033	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026674, intron 2 of 5)	intron (NM_026674, intron 2 of 5)	3173.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	181.34	223.94	185.92	209.84	222.99	193.71	235.53	247.17	145.51
Merged-chr2-84555688-1	chr2	84555188	84556188	+	759.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-48815.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	2.86	2.3	4.62	2.02	0.93	0.0	10.56	3.98	9.99
Merged-chr10-42615310-2	chr10	42614802	42615802	+	759.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31714.0	NM_152229	21907.0	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	4.0	2.3	7.4	1.35	3.27	6.43	3.17	0.44	0.0
Merged-chr3-54755499-1	chr3	54754999	54755999	+	759.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019483)	promoter-TSS (NM_019483)	-83.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	6.86	2.76	5.55	4.72	3.27	1.61	3.17	0.44	8.74
Merged-chr2-157070534-4	chr2	157069928	157070928	+	759.479187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	8837.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	122.99	61.75	63.82	124.15	53.18	106.1	80.27	71.63	49.96
Merged-chr1-166160855-3	chr1	166160361	166161361	+	759.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 4 of 6)	intron (NM_021610, intron 4 of 6)	30640.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	5.72	2.3	2.77	3.37	2.8	0.0	0.0	2.21	1.87
Merged-chr3-55949360-2	chr3	55948865	55949865	+	759.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030595, intron 33 of 57)	intron (NM_030595, intron 33 of 57)	102260.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	7.44	2.3	3.7	7.42	5.13	8.04	1.06	5.31	6.25
Merged-chr5-75154336-3	chr5	75153732	75154732	+	759.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347719, intron 1 of 15)	intron (NM_001347719, intron 1 of 15)	1296.0	NM_001347719	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	2.29	0.46	7.4	8.1	1.4	5.63	15.84	0.44	1.25
Merged-chr7-130621458-3	chr7	130620937	130621937	+	759.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_206856, intron 2 of 20)	intron (NM_206856, intron 2 of 20)	43953.0	NM_206856	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	12.01	5.07	1.85	9.45	3.73	1.61	11.62	10.17	1.87
Merged-chr11-59212497-3	chr11	59212010	59213010	+	759.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001130408, exon 5 of 5)	3' UTR (NM_001130408, exon 5 of 5)	4149.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	15.45	11.06	27.75	17.54	12.6	22.51	7.39	23.43	10.62
Merged-chr11-107510524-2	chr11	107510015	107511015	+	759.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30987.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	6.29	5.07	1.85	22.27	13.06	8.84	15.84	14.15	4.37
Merged-chr5-100750784-3	chr5	100750289	100751289	+	759.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31073.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	18.88	10.14	7.4	13.49	8.86	4.82	8.45	4.42	6.25
Merged-chr1-23399761-3	chr1	23399251	23400251	+	759.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-16576.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	25.17	12.44	3.7	21.59	21.93	25.72	20.07	15.03	13.12
Merged-chr13-96578777-2	chr13	96578273	96579273	+	759.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	RMER6B|LTR|ERVK	36038.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	30.32	20.27	18.5	21.59	20.53	30.54	24.29	20.78	18.11
Merged-chr10-111570800-1	chr10	111570300	111571300	+	759.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23473.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	2.29	3.23	3.7	6.75	1.87	1.61	1.06	3.1	4.37
Merged-chr19-27438444-3	chr19	27437879	27438879	+	759.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8342.0	NR_027987	107372.0	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	8.01	16.59	7.4	12.82	16.79	20.09	5.28	7.07	5.0
Merged-chr12-32135216-3	chr12	32134706	32135706	+	759.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73132.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	35.47	32.72	37.0	23.62	20.99	20.9	32.74	30.95	27.48
Merged-chr9-95612367-3	chr9	95611870	95612870	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-25258.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	17.16	14.28	15.72	16.87	9.8	13.66	22.18	3.98	7.49
Merged-chr15-38297428-3	chr15	38296856	38297856	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001289471, exon 3 of 5)	exon (NM_001289471, exon 3 of 5)	2544.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	14.87	9.68	3.7	14.17	9.8	20.9	17.96	14.59	8.74
Merged-chr15-79446015-3	chr15	79445510	79446510	+	759.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3867.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	96.11	53.45	50.87	86.36	40.59	65.11	106.67	65.88	68.07
Merged-chr5-107967054-3	chr5	107966549	107967549	+	759.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	20028.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	48.05	54.83	37.0	51.28	62.98	45.01	47.53	54.39	31.85
Merged-chr2-32863367-1	chr2	32862867	32863867	+	759.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12767.0	NM_146119	227737.0	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	3.43	1.84	9.25	3.37	0.93	4.82	2.11	3.1	2.5
Merged-chr8-24715368-2	chr8	24714896	24715896	+	759.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324489, intron 5 of 21)	intron (NM_001324489, intron 5 of 21)	10456.0	NM_009619	11497.0	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	11.44	6.45	3.7	13.49	10.73	8.04	3.17	2.65	7.49
Merged-chr18-54698977-2	chr18	54698482	54699482	+	759.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	87238.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	1.72	0.92	5.55	0.67	2.33	3.22	0.0	1.77	1.25
Merged-chr14-30888486-3	chr14	30887988	30888988	+	759.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018746, intron 2 of 22)	intron (NM_018746, intron 2 of 22)	2012.0	NM_001289632	16427.0	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	5.72	7.37	0.0	3.37	1.4	4.82	7.39	4.86	4.37
Merged-chr15-59831685-3	chr15	59831172	59832172	+	759.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-36713.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	37.76	29.49	16.65	56.0	34.99	24.11	35.91	29.18	23.11
Merged-chrX-159696672-1	chrX	159696172	159697172	+	759.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 2 of 17)	intron (NM_001135727, intron 2 of 17)	-11929.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.0	1.84	0.92	4.72	2.33	8.04	1.06	1.77	9.37
Merged-chr17-43140126-3	chr17	43139628	43140628	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18163.0	NR_045155	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	18.31	11.52	8.32	14.17	15.39	26.53	9.51	8.84	0.0
Merged-chr7-80928562-3	chr7	80928069	80929069	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019951, intron 2 of 5)	intron (NM_019951, intron 2 of 5)	18981.0	NM_019951	56529.0	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	10.87	5.99	2.77	6.07	3.27	10.45	3.17	5.31	2.5
Merged-chr10-31299359-3	chr10	31298860	31299860	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14045.0	NM_027168	69692.0	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	5.15	1.84	5.55	0.67	0.47	1.61	5.28	0.44	1.87
Merged-chr11-29870384-3	chr11	29869887	29870887	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 7 of 41)	L1M2|LINE|L1	-44719.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	12.59	26.73	15.72	23.62	19.59	31.35	20.07	17.24	23.11
Merged-chr4-117916018-2	chr4	117915524	117916524	+	759.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1025.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	24.6	33.18	31.45	12.14	12.6	23.31	26.4	15.48	29.98
Merged-chr17-28693284-2	chr17	28692802	28693802	+	759.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	734.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	96.11	88.01	82.32	85.69	73.71	74.75	74.99	103.02	81.81
Merged-chr9-122357294-2	chr9	122356805	122357805	+	759.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359207, intron 1 of 4)	intron (NM_001359207, intron 1 of 4)	5689.0	NM_026179	67469.0	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	6.86	7.37	3.7	4.05	5.6	6.43	3.17	5.75	8.74
Merged-chr8-11486274-3	chr8	11485744	11486744	+	759.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_011227	19332.0	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	13.16	2.76	8.32	4.72	0.47	0.0	2.11	1.33	6.25
Merged-chr17-56553184-3	chr17	56552689	56553689	+	759.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130128, intron 2 of 3)	intron (NR_130128, intron 2 of 3)	1198.0	NR_130128	100504425.0	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	3.43	1.84	2.77	0.67	1.87	4.82	4.22	2.21	2.5
Merged-chr7-131801525-2	chr7	131801037	131802037	+	759.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-164923.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	13.16	18.89	7.4	15.52	19.13	13.66	36.97	8.4	11.87
Merged-chr14-47506833-3	chr14	47506338	47507338	+	759.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027414, intron 2 of 5)	intron (NR_027414, intron 2 of 5)	34277.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	26.31	24.42	14.8	24.96	9.33	16.88	82.38	86.22	69.95
Merged-chr3-89908553-3	chr3	89908057	89909057	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	4639.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	49.2	38.71	20.35	53.3	37.32	48.23	26.4	28.74	24.98
Merged-chr13-103768132-3	chr13	103767625	103768625	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361085, intron 2 of 11)	intron (NM_001361085, intron 2 of 11)	-3543.0	NM_172592	218543.0	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	6.86	11.98	9.25	8.77	17.26	20.9	7.39	7.52	11.24
Merged-chr9-99498117-3	chr9	99497612	99498612	+	759.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028768, intron 16 of 21)	intron (NM_028768, intron 16 of 21)	27691.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	81.8	83.4	56.42	107.28	84.9	37.78	97.17	126.02	71.82
Merged-chr12-110598671-3	chr12	110598066	110599066	+	759.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2829.0	NM_030238	13424.0	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	13.73	6.45	12.95	14.84	6.06	4.02	13.73	14.15	6.25
Merged-chr1-156030045-2	chr1	156029563	156030563	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144791, intron 4 of 6)	intron (NM_144791, intron 4 of 6)	4754.0	NM_001160019	208263.0	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	26.31	35.94	41.62	20.92	26.59	33.76	27.46	46.43	29.98
Merged-chr2-153060324-2	chr2	153059804	153060804	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5651.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	2.86	2.76	0.0	8.1	6.06	6.43	38.02	28.74	34.97
Merged-chr3-96082942-1	chr3	96082442	96083442	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21585.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	7.44	8.29	18.5	10.8	6.06	9.65	14.79	6.63	5.0
Merged-chr17-64591909-1	chr17	64591409	64592409	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9740.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	89.24	75.57	52.72	78.94	84.9	53.85	90.83	66.33	34.35
Merged-chr2-70838688-2	chr2	70838166	70839166	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13186.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	12.59	6.91	7.4	14.17	14.46	13.66	25.35	17.24	13.74
Merged-chr14-103488893-1	chr14	103488393	103489393	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24448.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	14.3	11.98	14.8	10.12	5.6	18.49	14.79	9.29	18.74
Merged-chr13-75342203-1	chr13	75341703	75342703	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	252346.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	3.43	1.84	0.0	4.72	2.33	2.41	3.17	1.77	1.25
Merged-chr2-170239262-2	chr2	170238772	170239772	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96597.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	21.74	22.12	31.45	27.66	14.93	26.53	21.12	22.11	25.61
Merged-chr1-184020709-1	chr1	184020209	184021209	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13289.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	15.45	24.42	32.37	15.52	15.39	12.86	7.39	5.75	1.87
Merged-chr10-24630755-2	chr10	24630254	24631254	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35312.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	8.01	4.15	1.85	10.12	3.27	4.82	7.39	3.54	2.5
Merged-chr14-68048529-1	chr14	68048029	68049029	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35334.0	NM_010910	18039.0	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	1.14	0.0	1.85	4.05	1.87	1.61	2.11	2.65	3.75
Merged-chr19-53783770-1	chr19	53783270	53784270	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	Lx9|LINE|L1	106464.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	13.16	7.37	5.55	4.05	8.86	21.7	12.67	7.07	6.25
Merged-chrX-48345464-1	chrX	48344964	48345964	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178782, intron 2 of 14)	CpG	4106.0	NM_178782	320376.0	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	4.0	2.76	3.7	5.4	1.87	0.0	3.17	0.0	0.0
Merged-chr17-31072166-1	chr17	31071666	31072666	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	L3|LINE|CR1	14472.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	50.34	59.44	52.72	109.98	61.11	86.01	66.54	79.15	29.98
Merged-chr1-149939467-1	chr1	149938967	149939967	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	-17028.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	45.19	33.18	25.9	47.23	37.32	60.28	41.19	33.16	48.09
Merged-chr7-34348411-1	chr7	34347911	34348911	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 9 of 10)	intron (NM_025948, intron 9 of 10)	41294.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	16.59	10.6	4.62	11.47	7.46	14.47	23.24	10.61	9.99
Merged-chr4-116665129-1	chr4	116664629	116665629	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13455.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	17.16	21.2	40.7	29.69	20.53	40.19	23.24	19.9	18.74
Merged-chr1-118525447-1	chr1	118524947	118525947	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001359346, exon 22 of 38)	exon (NM_001359346, exon 22 of 38)	-66182.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	10.87	10.6	16.65	10.12	8.4	6.43	7.39	9.29	5.62
Merged-chr6-32519542-1	chr6	32519042	32520042	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	8401.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.15	6.45	9.25	14.17	6.53	4.82	4.22	3.54	5.0
Merged-chr13-60719975-1	chr13	60719475	60720475	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 8 of 26)	intron (NM_134062, intron 8 of 26)	66389.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	8.01	6.91	23.12	12.14	10.73	49.03	5.28	4.86	10.62
Merged-chrX-38468338-1	chrX	38467838	38468838	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-11878.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	30.32	22.12	9.25	16.87	13.53	8.04	27.46	25.65	13.74
Merged-chr10-4675157-1	chr10	4674657	4675657	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126357, intron 2 of 7)	intron (NR_126357, intron 2 of 7)	-35001.0	NM_001302531	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	2.29	3.23	0.0	2.7	2.8	0.0	4.22	0.44	0.0
Merged-chr16-13733836-1	chr16	13733336	13734336	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040574, intron 1 of 2)	intron (NR_040574, intron 1 of 2)	-3352.0	NM_011987	26565.0	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	1.14	6.91	0.0	6.75	5.13	1.61	3.17	2.65	0.0
Merged-chr15-31565826-1	chr15	31565326	31566326	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3007.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	12.01	19.35	11.1	28.34	32.66	31.35	8.45	12.38	12.49
Merged-chr6-72534249-2	chr6	72533755	72534755	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	7.44	5.07	0.0	4.05	0.0	3.22	0.0	0.88	4.37
Merged-chr11-58982326-1	chr11	58981826	58982826	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053168, intron 3 of 5)	intron (NM_053168, intron 3 of 5)	4233.0	NM_053168	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	1.72	3.69	0.0	9.45	1.87	8.04	41.19	26.09	11.87
Merged-chr2-117114624-1	chr2	117114124	117115124	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6447.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	20.02	21.66	7.4	14.17	17.73	17.68	14.79	6.63	6.87
Merged-chr8-128283025-1	chr8	128282525	128283525	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4800.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.15	4.61	1.85	4.72	3.73	6.43	6.34	0.44	2.5
Merged-chr3-10301998-1	chr3	10301498	10302498	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029310)	promoter-TSS (NM_029310)	-815.0	NM_029310	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	9.72	1.38	0.0	3.37	2.33	4.82	1.06	1.77	3.75
Merged-chr5-45385098-1	chr5	45384598	45385598	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	39302.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	8.58	5.07	9.25	9.45	5.6	24.11	0.0	2.65	8.74
Merged-chr12-119470452-3	chr12	119469938	119470938	+	759.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	27028.0	NM_001163136	238455.0	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	6.86	4.15	1.85	3.37	2.33	9.65	5.28	1.33	7.49
Merged-chr3-90628172-1	chr3	90627672	90628672	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15278.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	27.46	17.51	12.95	6.75	1.87	3.22	35.91	20.78	18.74
Merged-chr2-156189392-1	chr2	156188892	156189892	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7255.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	82.95	88.93	99.89	60.72	62.98	52.25	77.1	94.18	68.07
Merged-chr6-145779547-2	chr6	145779057	145780057	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28826.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.29	5.99	1.85	7.42	2.8	4.82	10.56	5.75	5.0
Merged-chr8-11016750-1	chr8	11016250	11017250	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 1 of 4)	PB1D10|SINE|Alu	-8320.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	15.45	15.67	6.47	35.76	27.52	26.53	7.39	11.94	5.62
Merged-chr12-70005312-2	chr12	70004805	70005805	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-18303.0	NM_022028	64010.0	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	5.15	2.3	5.55	6.75	5.13	3.22	5.28	3.98	3.75
Merged-chr4-58999893-2	chr4	58999395	59000395	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3298.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	2.86	3.69	4.62	4.72	3.73	4.82	1.06	1.33	2.5
Merged-chr8-111247944-1	chr8	111247444	111248444	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009149, intron 1 of 25)	intron (NM_009149, intron 1 of 25)	11258.0	NM_009149	20340.0	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	33.18	47.0	25.9	31.04	28.46	37.78	55.98	46.43	33.72
Merged-chr1-186554268-1	chr1	186553768	186554768	+	759.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131124, intron 1 of 2)	MTE2a|LTR|ERVL-MaLR	4413.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	8.01	2.76	3.7	2.02	0.93	0.8	6.34	0.88	2.5
Merged-chr17-23874039-1	chr17	23873539	23874539	+	759.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020487)	TTS (NM_020487)	5967.0	NM_020487	57256.0	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	4.58	4.15	3.7	3.37	2.33	3.22	5.28	2.21	2.5
Merged-chr1-75445943-3	chr1	75445436	75446436	+	758.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4574.0	NM_183022	241118.0	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	1.14	0.92	1.85	2.7	4.2	2.41	2.11	0.0	0.62
Merged-chr5-64038682-3	chr5	64038176	64039176	+	758.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6297.0	NR_045384	74757.0	Mm.159329	NR_045384	ENSMUSG00000106219	5830416I19Rik	-	RIKEN cDNA 5830416I19 gene	ncRNA	7.44	9.22	2.77	12.14	3.73	4.82	43.3	36.7	40.59
Merged-chr6-88198632-3	chr6	88198132	88199132	+	758.911072	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008090)	promoter-TSS (NM_008090)	-32.0	NM_008090	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	6.86	0.46	0.0	2.7	1.4	0.0	3.17	1.33	2.5
Merged-chr18-56924969-3	chr18	56924569	56925569	+	758.904785	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	CpG	479.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	52.63	50.69	33.3	47.9	40.59	49.03	27.46	26.53	12.49
Merged-chr17-35240603-3	chr17	35240145	35241145	+	758.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1101.0	NM_019693	53817.0	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	162.46	123.95	50.87	127.52	72.78	71.54	94.0	112.31	58.71
Merged-chr2-166654222-2	chr2	166653718	166654718	+	758.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	59614.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	25.74	22.58	14.8	39.13	13.53	19.29	44.36	30.51	12.49
Merged-chr3-108878552-2	chr3	108878036	108879036	+	758.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	11472.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	42.9	29.03	23.12	13.49	14.0	22.51	34.85	22.55	28.73
Merged-chr3-21951827-2	chr3	21951328	21952328	+	758.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	-124824.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	16.59	11.52	8.32	20.92	6.06	11.25	22.18	15.48	8.74
Merged-chr6-43404686-1	chr6	43404186	43405186	+	758.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-37743.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	4.58	4.61	1.85	6.75	5.13	2.41	3.17	4.42	7.49
Merged-chr5-114851896-1	chr5	114851396	114852396	+	758.833313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_105748)	promoter-TSS (NR_105748)	-52.0	NR_105748	102466620.0		NR_105748	ENSMUSG00000098343	Mir6240	Gm27850|mmu-mir-6240	microRNA 6240	ncRNA	3.43	0.46	0.0	0.67	0.47	0.8	0.0	1.33	4.37
Merged-chr4-95216258-3	chr4	95215755	95216755	+	758.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-164033.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	40.04	64.05	20.35	89.06	96.1	87.61	31.69	38.91	35.6
Merged-chr19-11494734-3	chr19	11494222	11495222	+	758.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	2684.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	37.18	28.57	21.27	36.43	18.66	17.68	38.02	36.26	19.98
Merged-chr19-23085829-1	chr19	23085329	23086329	+	758.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55397.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	1.14	1.38	5.55	2.7	0.47	0.0	14.79	13.27	8.12
Merged-chr12-98737427-1	chr12	98736927	98737927	+	758.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001146199)	promoter-TSS (NM_001146199)	-22.0	NM_001146199	24000.0	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	16.59	4.15	3.7	20.92	14.93	14.47	16.9	3.54	2.5
Merged-chr1-184534285-3	chr1	184533825	184534825	+	758.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040472, intron 2 of 5)	(TG)n|Simple_repeat|Simple_repeat	23366.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	42.9	33.64	13.87	43.86	23.79	27.33	23.24	29.18	25.61
Merged-chr19-32987929-3	chr19	32987447	32988447	+	758.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-169165.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	36.04	51.61	16.65	24.96	24.26	28.13	58.09	52.18	21.86
Merged-chr14-79562744-6	chr14	79562238	79563238	+	758.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286412, intron 3 of 7)	intron (NM_001286412, intron 3 of 7)	-24922.0	NM_026474	67955.0	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	85.81	86.17	90.65	58.03	65.78	85.2	81.33	101.7	48.09
Merged-chr19-17337231-2	chr19	17336724	17337724	+	758.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	2281.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	8.58	12.44	15.72	12.82	11.2	14.47	23.24	28.3	31.85
Merged-chr2-116923408-1	chr2	116922908	116923908	+	758.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23256.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	12.01	9.22	12.95	19.57	6.53	17.68	7.39	3.1	2.5
Merged-chr15-102140761-3	chr15	102140266	102141266	+	758.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3420.0	NM_008344	16012.0	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	8.58	5.99	1.85	2.7	2.8	8.04	5.28	0.44	6.25
Merged-chr8-36093790-2	chr8	36093298	36094298	+	758.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1030.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	2.86	0.92	0.0	2.02	2.33	5.63	3.17	5.75	1.25
Merged-chr18-12655276-2	chr18	12654772	12655772	+	758.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	11739.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	7.44	2.76	11.1	8.77	2.33	4.82	15.84	10.61	11.87
Merged-chr6-121077378-3	chr6	121076848	121077848	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	4279.0	NM_153396	194401.0	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	4.58	2.3	5.55	14.17	8.4	8.04	15.84	4.42	5.0
Merged-chr8-57602053-1	chr8	57601553	57602553	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	intron (NM_001167981, intron 1 of 11)	-49700.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	5.72	6.45	11.1	6.75	5.6	2.41	8.45	5.75	7.49
Merged-chr10-20655113-1	chr10	20654613	20655613	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	69965.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	15.45	9.68	7.4	20.24	8.4	12.86	11.62	6.19	1.87
Merged-chr1-106071438-1	chr1	106070938	106071938	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81032.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.57	2.76	5.55	4.72	1.4	0.0	2.11	3.98	1.25
Merged-chr18-4234474-3	chr18	4233986	4234986	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	68654.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	8.58	6.91	16.65	8.77	6.06	10.45	7.39	6.19	7.49
Merged-chr8-105226055-1	chr8	105225555	105226555	+	758.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145604, intron 1 of 15)	intron (NM_145604, intron 1 of 15)	867.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	30.32	32.72	47.17	24.29	31.26	43.4	54.92	57.04	28.1
Merged-chr15-101138830-3	chr15	101138335	101139335	+	758.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277255, intron 10 of 11)	intron (NM_001277255, intron 10 of 11)	10313.0	NM_001277257	11482.0	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	14.87	19.81	23.12	25.64	10.26	19.29	35.91	26.09	16.24
Merged-chr19-11588348-2	chr19	11587853	11588853	+	758.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026835, intron 5 of 6)	intron (NM_026835, intron 5 of 6)	16451.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	32.61	22.58	16.65	20.24	21.46	23.31	23.24	21.22	19.36
Merged-chr15-91260118-2	chr15	91259589	91260589	+	758.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68082.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	9.15	16.59	29.6	10.8	11.2	5.63	7.39	6.63	11.24
Merged-chr15-95792570-2	chr15	95792063	95793063	+	758.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	1720.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	268.87	286.61	140.59	290.13	249.58	147.09	362.27	313.94	154.88
Merged-chr7-105779127-3	chr7	105778629	105779629	+	758.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162943, intron 1 of 20)	MIRb|SINE|MIR	8421.0	NM_001162943	233651.0	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous cadherin related 1	protein-coding	40.04	38.71	36.07	32.39	38.72	51.44	45.42	36.7	33.72
Merged-chr13-102669080-2	chr13	102668577	102669577	+	758.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24470.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	12.01	4.61	1.85	10.8	3.73	8.04	5.28	6.63	2.5
Merged-chr19-41386740-3	chr19	41386235	41387235	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1665.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	29.75	18.89	12.02	27.66	14.93	16.88	20.07	15.48	7.49
Merged-chr19-32384933-3	chr19	32384430	32385430	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	3119.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.72	8.75	3.7	8.77	4.67	1.61	4.22	3.1	5.0
Merged-chr2-165329997-3	chr2	165329510	165330510	+	758.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3531.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	26.89	22.12	17.57	22.94	10.73	24.11	22.18	15.48	26.23
Merged-chr14-74944842-2	chr14	74944343	74945343	+	758.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	3034.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	24.03	41.01	55.5	23.62	17.26	19.29	41.19	37.58	42.47
Merged-chr8-105362155-2	chr8	105361657	105362657	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081332, intron 12 of 15)	intron (NM_001081332, intron 12 of 15)	-13224.0	NM_001081333	102075.0	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	20.59	5.53	9.25	12.14	11.66	24.11	14.79	4.86	6.25
Merged-chr12-85993089-1	chr12	85992589	85993589	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	85952.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	48.05	39.63	24.97	49.25	41.05	37.78	39.08	42.45	20.61
Merged-chr6-16863116-1	chr6	16862616	16863616	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 2 of 6)	MTE2a|LTR|ERVL-MaLR	35325.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	26.31	28.57	24.05	25.64	23.79	32.15	29.57	23.88	9.99
Merged-chr5-3368424-1	chr5	3367924	3368924	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	24531.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	32.61	19.81	20.35	36.43	25.19	43.4	27.46	18.57	19.36
Merged-chr1-86215439-2	chr1	86214928	86215928	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	MTD|LTR|ERVL-MaLR	60648.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	13.16	15.21	12.02	24.29	15.39	28.13	14.79	9.73	8.74
Merged-chr17-31296670-2	chr17	31296168	31297168	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001242427, exon 1 of 20)	5' UTR (NM_001242427, exon 1 of 20)	444.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	65.21	49.3	50.87	65.45	54.58	62.7	113.01	79.59	48.09
Merged-chr6-17749799-1	chr6	17749299	17750299	+	758.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	629.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	13.16	17.97	11.1	18.22	10.73	9.65	30.63	24.32	13.12
Merged-chr3-107110985-1	chr3	107110485	107111485	+	758.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	9418.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	8.01	8.75	5.55	26.31	15.39	21.7	27.46	28.74	30.6
Merged-chr16-20241313-2	chr16	20240796	20241796	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198599)	promoter-TSS (NM_198599)	62.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	5.15	1.84	0.0	3.37	0.47	3.22	4.22	0.88	3.75
Merged-chr16-45110772-2	chr16	45110300	45111300	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026439, intron 3 of 7)	RMER5|LTR|ERV1	16789.0	NM_026439	67896.0	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	7.44	11.98	26.82	12.82	8.86	11.25	5.28	2.21	6.25
Merged-chr6-127420031-2	chr6	127419526	127420526	+	758.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-26814.0	NM_001346513	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	7.44	9.22	16.65	8.1	5.13	14.47	5.28	0.0	5.0
Merged-chr3-37038038-2	chr3	37037556	37038556	+	758.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172679, intron 74 of 85)	intron (NM_172679, intron 74 of 85)	-25600.0	NM_009350	21744.0	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	10.87	6.45	6.47	22.94	22.39	28.13	22.18	18.13	10.62
Merged-chr14-121931156-3	chr14	121930658	121931658	+	758.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	MLT1F1|LTR|ERVL-MaLR	-15384.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	18.31	25.34	7.4	20.92	7.0	18.49	5.28	11.94	5.0
Merged-chr7-102100253-2	chr7	102099754	102100754	+	758.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291354)	promoter-TSS (NM_001291354)	-25.0	NM_007491	11875.0	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	18.88	9.68	3.7	18.22	15.39	4.82	16.9	20.34	8.12
Merged-chr14-25800368-3	chr14	25799881	25800881	+	758.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31525.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	1.14	2.3	3.7	2.02	3.27	0.0	3.17	2.65	0.0
Merged-chr15-61988009-3	chr15	61987538	61988538	+	758.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010849, exon 2 of 3)	exon (NM_010849, exon 2 of 3)	2697.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	56.06	72.34	47.17	67.47	78.37	77.16	70.76	82.69	44.34
Merged-chr15-13244491-2	chr15	13244001	13245001	+	758.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70826.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.29	4.15	0.92	8.77	3.27	1.61	4.22	1.77	5.0
Merged-chr1-64200684-3	chr1	64200175	64201175	+	758.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79286.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	36.61	38.71	30.52	19.57	18.19	32.96	26.4	26.97	33.72
Merged-chr2-80062844-2	chr2	80062330	80063330	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	L1_Mus3|LINE|L1	-23928.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	1.72	1.38	0.92	6.07	1.87	6.43	4.22	0.44	2.5
Merged-chr19-35152061-2	chr19	35151561	35152561	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186665.0	NR_035473	100316775.0		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	2.86	4.15	1.85	6.75	3.73	3.22	4.22	2.65	1.25
Merged-chr2-163580349-2	chr2	163579846	163580846	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21968.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	8.01	3.23	7.4	12.82	4.67	7.23	4.22	3.54	0.0
Merged-chr11-30900514-2	chr11	30900025	30901025	+	758.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	15167.0	NM_175490	237716.0	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	7.44	1.84	3.7	4.05	3.27	3.22	7.39	1.77	3.75
Merged-chr10-20828509-2	chr10	20828023	20829023	+	758.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-103445.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	1.72	6.45	10.17	9.45	6.06	8.04	12.67	3.98	10.62
Merged-chr17-21516474-3	chr17	21515967	21516967	+	758.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19072.0	NM_144515	22710.0	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	56.06	61.28	59.2	65.45	60.18	72.34	68.65	60.13	57.46
Merged-chr17-48285807-1	chr17	48285307	48286307	+	758.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-14231.0	NM_001033405	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	23.24	15.92	20.61
Merged-chr11-119258674-1	chr11	119258174	119259174	+	758.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175430, intron 16 of 18)	MLT2B2|LTR|ERVL	-9289.0	NM_001159324	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	32.04	30.87	37.0	47.9	48.05	39.39	31.69	38.47	9.99
Merged-chr1-91092144-1	chr1	91091644	91092644	+	758.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38700.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	27.46	17.51	20.35	20.92	13.53	12.06	39.08	25.65	8.74
Merged-chr2-43555254-3	chr2	43554760	43555760	+	758.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289594)	promoter-TSS (NM_001289594)	-65.0	NM_001289593	70789.0	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	27.46	26.73	20.35	21.59	25.66	22.51	26.4	21.22	11.24
Merged-chr18-38159367-1	chr18	38158867	38159867	+	758.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50395.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	3.43	2.3	3.7	1.35	0.93	4.82	3.17	2.65	1.25
Merged-chr4-58913752-3	chr4	58913232	58914232	+	758.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172381)	promoter-TSS (NM_172381)	-983.0	NM_172381	230249.0	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|Ecpas|mKIAA0368	expressed sequence AI314180	protein-coding	20.02	8.29	10.17	8.77	7.93	12.86	14.79	7.07	8.12
Merged-chr13-98834486-2	chr13	98834038	98835038	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19089.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	37.18	44.24	36.07	32.39	19.59	44.21	20.07	41.12	33.72
Merged-chr7-49633549-2	chr7	49633058	49634058	+	758.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005232, exon 3 of 4)	exon (NM_001005232, exon 3 of 4)	3277.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	1.72	2.76	7.4	3.37	2.33	0.8	7.39	1.33	5.0
Merged-chr12-110683011-2	chr12	110682414	110683414	+	758.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025488)	promoter-TSS (NM_025488)	-295.0	NM_025488	66323.0	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	12.59	11.52	12.95	12.82	3.27	10.45	6.34	1.33	3.75
Merged-chr7-6343681-1	chr7	6343181	6344181	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13247.0	NM_001033249	213011.0	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	3.43	4.61	5.55	8.77	5.13	7.23	11.62	3.54	1.87
Merged-chr16-25036536-2	chr16	25036036	25037036	+	758.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23103.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.58	3.23	1.85	6.75	4.2	1.61	2.11	0.88	0.0
Merged-chr4-137389158-3	chr4	137388663	137389663	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20628.0	NM_001126318	242711.0	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011	chymotrypsin-like elastase family, member 3A	protein-coding	142.44	174.18	136.89	145.74	124.56	147.09	146.81	182.62	88.06
Merged-chr6-57756859-3	chr6	57756374	57757374	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 4 of 4)	intron (NM_146168, intron 4 of 4)	54419.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	12.59	15.67	33.3	12.82	14.0	22.51	12.67	11.5	7.49
Merged-chr12-102395768-3	chr12	102395258	102396258	+	758.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011175, exon 12 of 14)	exon (NM_011175, exon 12 of 14)	44055.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	38.9	27.19	58.27	31.71	24.72	45.01	39.08	22.11	16.24
Merged-chr12-12289377-3	chr12	12288868	12289868	+	758.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029758, intron 2 of 12)	intron (NM_029758, intron 2 of 12)	27229.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	38.33	37.32	27.75	21.59	29.86	24.11	51.75	33.16	48.71
Merged-chr19-4086501-2	chr19	4086007	4087007	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001160253, exon 5 of 6)	exon (NM_001160253, exon 5 of 6)	2988.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	4.58	1.38	1.85	8.1	1.87	6.43	8.45	6.19	2.5
Merged-chr19-6976234-2	chr19	6975761	6976761	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008889, intron 1 of 3)	intron (NM_008889, intron 1 of 3)	1213.0	NM_008889	18938.0	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	18.88	11.98	38.85	22.27	14.46	25.72	12.67	11.5	11.24
Merged-chr7-133032694-2	chr7	133032203	133033203	+	758.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-17456.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	6.86	2.76	0.0	2.02	0.93	1.61	6.34	0.0	0.0
Merged-chr4-83512400-2	chr4	83511878	83512878	+	758.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-13167.0	NM_001355549	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	6.29	9.68	7.4	4.72	3.27	6.43	11.62	4.42	7.49
Merged-chr12-84202813-2	chr12	84202300	84203300	+	758.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	Tigger16a|DNA|TcMar-Tigger	-8785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	12.01	5.07	13.87	17.54	4.67	10.45	12.67	4.86	11.24
Merged-chr17-65786407-3	chr17	65785914	65786914	+	758.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	3059.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	23.45	29.49	23.12	19.57	14.46	26.53	34.85	15.92	23.11
Merged-chrX-113785523-2	chrX	113785009	113786009	+	758.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289734, intron 11 of 15)	Lx3A|LINE|L1	487253.0	NM_001142570	93837.0	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund family transcription factor 2	protein-coding	4.0	4.61	5.55	2.7	0.93	2.41	4.22	0.88	6.25
Merged-chr1-173879421-2	chr1	173878923	173879923	+	758.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	764.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	98.97	143.3	60.12	277.98	329.82	171.21	146.81	194.11	63.08
Merged-chr1-140245693-3	chr1	140245187	140246187	+	758.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081027)	promoter-TSS (NM_001081027)	-570.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	3.43	3.23	1.85	2.02	4.2	6.43	5.28	4.86	1.25
Merged-chr2-160451621-3	chr2	160451153	160452153	+	758.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84588.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	16.59	10.6	5.55	20.92	11.66	16.88	8.45	7.96	8.74
Merged-chr6-129534279-3	chr6	129533770	129534770	+	758.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045270)	promoter-TSS (NR_045270)	-986.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	44.62	45.62	25.9	60.72	47.58	26.53	36.97	34.49	19.36
Merged-chr11-69793596-2	chr11	69793097	69794097	+	758.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009601, exon 6 of 11)	exon (NM_009601, exon 6 of 11)	2340.0	NM_009601	11443.0	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	6.86	5.07	5.55	6.07	1.87	4.02	6.34	1.33	4.37
Merged-chr1-80639160-2	chr1	80638664	80639664	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	MTEa|LTR|ERVL-MaLR	26188.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	24.6	24.88	30.52	26.31	12.6	16.88	38.02	22.55	19.36
Merged-chr1-92834195-1	chr1	92833695	92834695	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	2550.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	1.72	1.38	0.0	4.72	2.8	3.22	7.39	2.65	0.0
Merged-chrX-159156057-2	chrX	159155577	159156577	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-99705.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	12.59	17.05	10.17	12.82	9.33	14.47	9.51	6.63	14.36
Merged-chr18-46475756-1	chr18	46475256	46476256	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-9940.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	28.6	21.2	22.2	45.21	29.39	46.62	24.29	18.57	21.23
Merged-chr10-61370961-1	chr10	61370461	61371461	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12562.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	30.32	35.94	33.3	31.04	36.39	45.01	52.81	48.2	32.48
Merged-chr10-13540087-3	chr10	13539583	13540583	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019961, intron 3 of 11)	intron (NM_019961, intron 3 of 11)	-12824.0	NM_025748	66757.0	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	8.58	5.07	2.77	8.1	3.27	2.41	5.28	7.07	9.37
Merged-chr5-143235593-1	chr5	143235093	143236093	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_040700)	TTS (NR_040700)	430.0	NM_177681	231866.0	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	31.46	38.71	38.85	53.3	48.98	64.3	50.7	24.32	17.49
Merged-chr17-57292457-3	chr17	57291924	57292924	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	B4A|SINE|B4	13324.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	32.61	12.9	7.4	23.62	16.33	36.17	29.57	23.88	10.62
Merged-chr15-63648493-1	chr15	63647993	63648993	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160246.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	8.01	3.23	7.4	9.45	5.13	6.43	5.28	6.19	0.62
Merged-chr14-120357064-1	chr14	120356564	120357564	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	50612.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.58	8.29	1.85	12.82	2.33	10.45	19.01	8.84	16.86
Merged-chr8-126945081-1	chr8	126944581	126945581	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024214, intron 1 of 4)	intron (NM_024214, intron 1 of 4)	840.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	71.51	71.88	88.8	101.88	87.24	74.75	79.21	85.34	54.33
Merged-chr10-66908798-2	chr10	66908294	66909294	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	11590.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	7.44	2.76	0.0	5.4	5.13	4.82	5.28	8.4	11.24
Merged-chr7-126285482-1	chr7	126284982	126285982	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145587, intron 1 of 3)	intron (NM_145587, intron 1 of 3)	12986.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	6.29	2.3	1.85	6.75	3.27	0.0	1.06	0.0	6.25
Merged-chr10-95529613-1	chr10	95529113	95530113	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	intron (NM_080560, intron 1 of 3)	14451.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	63.5	94.92	62.9	70.17	55.05	53.85	61.26	104.79	74.32
Merged-chr12-82234797-1	chr12	82234297	82235297	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	MLTR14|LTR|ERV1	64781.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	3.43	5.07	1.85	8.77	12.6	4.82	7.39	11.05	3.75
Merged-chr14-66805627-2	chr14	66805140	66806140	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 13 of 13)	intron (NM_009955, intron 13 of 13)	62960.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	10.87	8.29	7.4	6.75	5.6	21.7	5.28	12.38	11.24
Merged-chr6-125163861-1	chr6	125163361	125164361	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289726, intron 2 of 6)	intron (NM_001289726, intron 2 of 6)	1912.0	NM_008084	14433.0	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	56.63	43.77	14.8	50.6	53.18	43.4	43.3	48.2	33.72
Merged-chr17-47509221-2	chr17	47508719	47509719	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	4168.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	46.91	48.84	61.97	34.41	35.92	64.3	58.09	69.42	39.97
Merged-chrX-106187943-2	chrX	106187458	106188458	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	858.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	53.2	61.28	24.05	58.03	62.05	37.78	50.7	81.36	20.61
Merged-chr4-95417326-1	chr4	95416826	95417826	+	758.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-140181.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	17.16	15.67	6.47	21.59	21.93	22.51	26.4	18.57	6.87
Merged-chr2-5080251-1	chr2	5079751	5080751	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16134.0	NM_001356487	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	4.0	3.69	0.92	5.4	2.33	3.22	7.39	4.86	2.5
Merged-chr5-76292875-1	chr5	76292375	76293375	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007715, intron 2 of 22)	L1_Mus2|LINE|L1	10627.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	4.58	3.69	1.85	6.07	3.27	5.63	1.06	3.1	3.75
Merged-chr17-87155903-2	chr17	87155404	87156404	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39038.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	86.38	104.14	117.47	130.9	140.42	123.78	21.12	11.5	6.25
Merged-chr3-59213830-2	chr3	59213346	59214346	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-2964.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	61.21	89.85	80.47	53.98	41.52	59.48	64.43	66.33	40.59
Merged-chr14-61803960-1	chr14	61803460	61804460	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-121587.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	13.73	16.13	23.12	12.14	4.2	8.84	20.07	13.27	15.61
Merged-chr6-127008429-1	chr6	127007929	127008929	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7113.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	6.86	3.69	3.7	2.7	0.93	1.61	2.11	0.44	5.62
Merged-chr10-28425611-1	chr10	28425111	28426111	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 7 of 30)	MTEa|LTR|ERVL-MaLR	-242749.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	9.15	9.68	5.55	5.4	6.06	8.04	1.06	3.98	5.0
Merged-chr2-157078545-3	chr2	157078070	157079070	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001164663, exon 1 of 15)	exon (NM_001164663, exon 1 of 15)	695.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	194.5	93.08	92.5	115.38	84.9	109.32	120.41	88.88	71.2
Merged-chr12-102733560-3	chr12	102733070	102734070	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10091.0	NM_001142937	64113.0	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	2.86	0.92	0.0	2.02	0.47	1.61	0.0	0.88	0.0
Merged-chr2-24869732-1	chr2	24869232	24870232	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012518, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	49877.0	NM_172545	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	9.15	8.75	26.82	12.14	3.73	8.04	4.22	6.63	0.0
Merged-chr10-8022165-1	chr10	8021665	8022665	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-66042.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	18.31	10.14	14.8	18.89	13.06	12.06	12.67	8.84	16.24
Merged-chr7-29297233-2	chr7	29296741	29297741	+	758.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6764.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.57	2.76	1.85	0.67	0.47	0.0	4.22	0.44	0.0
Merged-chr14-26642493-1	chr14	26641993	26642993	+	758.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	4359.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	38.9	53.45	25.9	26.99	36.85	30.54	46.47	50.41	39.35
Merged-chr7-34407721-3	chr7	34407254	34408254	+	757.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18049.0	NM_025948	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	6.29	7.37	0.0	4.05	2.33	1.61	2.11	3.1	5.0
Merged-chr2-150838113-2	chr2	150837617	150838617	+	757.974976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356549, intron 10 of 13)	intron (NM_001356549, intron 10 of 13)	4453.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	68.65	67.74	43.47	83.66	68.11	95.65	41.19	69.42	21.23
Merged-chr5-31754804-3	chr5	31754296	31755296	+	757.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	ORR1E|LTR|ERVL-MaLR	56746.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	21.74	23.5	27.75	23.62	34.06	33.76	38.02	18.13	14.99
Merged-chr2-152671855-3	chr2	152671371	152672371	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 1 of 11)	intron (NM_010376, intron 1 of 11)	2410.0	NM_001159552	14950.0	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	12.01	8.75	11.1	8.1	7.46	6.43	10.56	5.31	6.25
Merged-chr17-67450636-3	chr17	67450130	67451130	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96139.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	64.64	74.65	69.37	48.58	37.32	37.78	129.91	107.0	49.34
Merged-chr7-88430312-3	chr7	88429822	88430822	+	757.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028238)	promoter-TSS (NM_028238)	49.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	4.0	5.07	0.0	10.12	3.73	3.22	5.28	6.19	2.5
Merged-chr7-141458566-3	chr7	141458053	141459053	+	757.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025802, intron 5 of 7)	intron (NM_025802, intron 5 of 7)	-2541.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	11.44	6.45	12.95	10.12	6.53	13.66	7.39	3.98	8.74
Merged-chr8-112034853-3	chr8	112034350	112035350	+	757.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23491.0	NM_020584	57321.0	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	6.29	2.76	1.85	1.35	2.33	1.61	1.06	0.88	3.75
Merged-chr17-65802391-3	chr17	65801878	65802878	+	757.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152099, intron 2 of 20)	intron (NR_152099, intron 2 of 20)	19023.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	56.63	39.63	56.42	68.15	48.05	57.87	58.09	43.33	47.46
Merged-chr11-98777439-2	chr11	98776947	98777947	+	757.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2070.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	113.27	95.84	69.37	122.8	77.91	102.88	125.69	131.32	98.05
Merged-chr2-24383906-3	chr2	24383413	24384413	+	757.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355231, intron 2 of 17)	intron (NM_001355231, intron 2 of 17)	-1419.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	38.9	53.45	55.5	51.28	32.19	57.87	48.58	35.37	43.72
Merged-chr19-38931451-3	chr19	38930961	38931961	+	757.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008234, exon 2 of 22)	exon (NM_008234, exon 2 of 22)	471.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	8.01	8.75	16.65	12.82	7.0	10.45	12.67	5.31	8.12
Merged-chr1-65155004-1	chr1	65154504	65155504	+	757.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24138.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	8.01	6.91	14.8	6.07	11.2	8.04	3.17	4.86	18.11
Merged-chr15-77772953-3	chr15	77772460	77773460	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 25 of 40)	G-rich|Low_complexity|Low_complexity	-15950.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	13.16	5.53	11.1	9.45	14.93	7.23	9.51	6.19	8.12
Merged-chr12-83861992-3	chr12	83861496	83862496	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073564, intron 2 of 12)	intron (NR_073564, intron 2 of 12)	14816.0	NM_001272056	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	38.9	85.71	82.32	37.11	63.91	70.73	102.45	103.91	63.7
Merged-chr9-113805503-3	chr9	113805000	113806000	+	757.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	L2a|LINE|L2	-7086.0	NM_001286601	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	32.61	14.28	10.17	19.57	14.93	12.06	26.4	11.5	14.36
Merged-chr9-110622826-3	chr9	110622321	110623321	+	757.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026012, intron 2 of 4)	intron (NM_026012, intron 2 of 4)	1572.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	27.46	21.2	40.7	14.17	15.39	20.9	23.24	27.86	17.49
Merged-chr8-105263506-3	chr8	105262963	105263963	+	757.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033161, intron 1 of 4)	intron (NM_001033161, intron 1 of 4)	1131.0	NM_001033161	71609.0	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	10.87	6.91	11.1	7.42	4.67	9.65	8.45	4.86	9.99
Merged-chr19-33110017-3	chr19	33109514	33110514	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47098.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	8.01	7.83	7.4	21.59	7.46	6.43	7.39	11.05	1.25
Merged-chr5-134509176-3	chr5	134508674	134509674	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009990, intron 8 of 16)	MIR3|SINE|MIR	43260.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	12.01	11.98	24.05	15.52	14.46	12.86	11.62	15.03	8.74
Merged-chr8-45875454-3	chr8	45874947	45875947	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10038.0	NM_016798	53318.0	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	8.58	4.15	1.85	6.75	4.2	4.82	5.28	0.88	5.0
Merged-chr19-16349504-3	chr19	16349018	16350018	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	L1MB3|LINE|L1	-34514.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	13.73	8.75	14.8	12.14	7.0	7.23	7.39	11.05	6.87
Merged-chr6-38951062-3	chr6	38950566	38951566	+	757.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 2 of 12)	intron (NM_011539, intron 2 of 12)	32080.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	101.25	73.73	52.72	124.15	69.51	96.45	123.57	111.87	76.19
Merged-chr6-145802193-1	chr6	145801693	145802693	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6190.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	201.36	166.8	60.12	239.52	213.66	114.14	94.0	89.76	48.71
Merged-chr7-139949974-2	chr7	139949466	139950466	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6110.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	5.15	5.99	7.4	15.52	6.53	12.86	19.01	15.92	8.12
Merged-chr9-111039830-1	chr9	111039330	111040330	+	757.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008522, intron 15 of 16)	intron (NM_008522, intron 15 of 16)	17414.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	16.02	8.75	12.95	12.14	9.8	9.65	9.51	15.92	11.24
Merged-chr17-33903521-3	chr17	33903038	33904038	+	757.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-1597.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	43.48	65.43	55.5	92.44	72.31	84.4	69.71	84.9	76.19
Merged-chr4-56134582-3	chr4	56134078	56135078	+	757.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-602103.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	2.86	2.76	5.55	6.07	2.33	6.43	4.22	3.54	5.0
Merged-chrX-20368094-3	chrX	20367615	20368615	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290644, intron 2 of 5)	intron (NM_001290644, intron 2 of 5)	3634.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	13.16	17.05	18.5	18.22	14.46	13.66	13.73	17.69	17.49
Merged-chr10-83198573-3	chr10	83198058	83199058	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139259.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	5.15	5.99	6.47	8.77	7.46	8.04	6.34	1.77	5.0
Merged-chr11-45543537-1	chr11	45543037	45544037	+	757.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-264546.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	7.44	13.82	7.4	10.8	5.6	12.06	2.11	1.33	2.5
Merged-chr5-52743473-3	chr5	52742991	52743991	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025951, intron 1 of 9)	intron (NM_025951, intron 1 of 9)	1917.0	NM_025951	67073.0	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	46.91	64.97	37.0	48.58	60.18	32.15	25.35	24.76	23.73
Merged-chr17-87281553-3	chr17	87281055	87282055	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015506, intron 1 of 4)	intron (NR_015506, intron 1 of 4)	1259.0	NR_015506	74597.0	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	141.87	125.33	96.2	145.06	99.37	102.88	108.79	106.56	66.2
Merged-chr1-176847629-3	chr1	176847121	176848121	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-11488.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	24.6	20.74	44.4	24.96	19.13	18.49	39.08	32.28	19.98
Merged-chr19-12571104-1	chr19	12570604	12571604	+	757.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2406.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	1.72	7.83	0.0	4.72	3.27	1.61	72.88	59.69	33.1
Merged-chr15-36828201-3	chr15	36827697	36828697	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31268.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	1.72	2.76	3.7	2.7	3.27	1.61	7.39	0.44	3.75
Merged-chr4-12089967-3	chr4	12089474	12090474	+	757.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198957, intron 2 of 3)	CpG-9730	604.0	NM_198957	77604.0	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	40.04	21.66	7.4	47.23	38.72	12.86	46.47	45.54	6.25
Merged-chr15-84324740-2	chr15	84324240	84325240	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022321)	promoter-TSS (NM_022321)	20.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	46.34	37.78	61.05	58.03	65.78	32.15	110.9	101.26	33.72
Merged-chr6-86524138-2	chr6	86523641	86524641	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011865)	TTS (NM_011865)	2048.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	46.34	59.44	31.45	53.98	34.06	41.8	48.58	54.83	45.59
Merged-chr15-98877471-2	chr15	98876956	98877956	+	757.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026967)	TTS (NM_026967)	3958.0	NM_026967	69159.0	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	3.43	1.84	3.7	5.4	1.87	4.02	3.17	0.88	0.62
Merged-chr15-25985623-2	chr15	25985139	25986139	+	757.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 1 of 5)	B1_Mus1|SINE|Alu	1273.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	72.65	64.51	35.15	71.52	48.98	48.23	48.58	61.02	24.98
Merged-chr4-88275664-3	chr4	88275167	88276167	+	757.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 16 of 43)	intron (NM_001081184, intron 16 of 43)	153627.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	14.3	10.6	16.65	12.14	19.13	14.47	8.45	8.4	3.75
Merged-chr16-10521372-3	chr16	10520864	10521864	+	757.605591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007575, intron 15 of 18)	intron (NM_007575, intron 15 of 18)	21690.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	7.44	1.84	7.4	7.42	1.4	0.0	5.28	2.65	8.74
Merged-chr8-35408056-2	chr8	35407554	35408554	+	757.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32313.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	14.87	4.61	0.0	8.1	2.33	4.82	5.28	5.31	6.25
Merged-chr1-176834140-3	chr1	176833630	176834630	+	757.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037996)	TTS (NR_037996)	2003.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	52.06	58.52	48.1	59.38	48.52	38.58	78.16	76.05	61.2
Merged-chr12-69733716-3	chr12	69733224	69734224	+	757.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361691, intron 1 of 4)	intron (NM_001361691, intron 1 of 4)	8779.0	NM_001361690	68055.0	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	5.15	8.29	5.55	12.14	11.2	4.82	10.56	3.54	3.12
Merged-chr11-97362863-4	chr11	97362393	97363393	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138657, exon 1 of 10)	exon (NM_138657, exon 1 of 10)	342.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	299.76	199.52	269.16	329.26	227.19	172.81	355.93	237.89	142.39
Merged-chr2-145829652-2	chr2	145829146	145830146	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	43530.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	73.79	64.51	55.5	80.97	50.85	51.44	69.71	80.03	43.72
Merged-chr9-116151506-1	chr9	116151006	116152006	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23857.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.73	19.35	17.57	12.82	8.86	26.53	7.39	1.77	2.5
Merged-chr13-101842138-2	chr13	101841620	101842620	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73903.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	77.23	85.71	74.92	103.23	77.44	121.37	116.18	137.96	66.82
Merged-chr1-85766250-2	chr1	85765724	85766724	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9047.0	NR_108086	77762.0	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	9.72	7.37	8.32	14.17	16.79	13.66	7.39	13.71	6.87
Merged-chr7-115034174-1	chr7	115033674	115034674	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82900.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.29	3.69	5.55	2.7	4.2	1.61	5.28	3.54	1.87
Merged-chr3-87971421-1	chr3	87970921	87971921	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016701, exon 1 of 4)	exon (NM_016701, exon 1 of 4)	328.0	NM_016701	18008.0	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2	nestin	protein-coding	5.15	1.38	3.7	4.72	1.87	1.61	2.11	1.33	6.25
Merged-chr7-80201224-2	chr7	80200719	80201719	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	2778.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	34.32	20.74	24.05	22.94	22.39	16.88	29.57	27.41	8.12
Merged-chr10-37014473-1	chr10	37013973	37014973	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39929.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	2.86	4.61	0.0	2.7	4.2	3.22	3.17	3.1	3.75
Merged-chr5-72552836-1	chr5	72552336	72553336	+	757.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	6809.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	33.75	66.35	47.17	33.74	27.52	48.23	65.48	67.65	54.96
Merged-chr4-70621505-3	chr4	70621007	70622007	+	757.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86579.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	2.86	1.38	2.77	0.67	2.8	1.61	4.22	2.65	6.25
Merged-chr5-135956548-3	chr5	135956058	135957058	+	757.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	17918.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	70.36	77.41	64.75	63.42	78.84	89.22	17.96	31.84	25.61
Merged-chr11-82954521-2	chr11	82954028	82955028	+	757.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183201, intron 1 of 5)	MER89|LTR|ERV1	2426.0	NM_183201	327978.0	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	20.59	13.36	11.1	17.54	15.39	15.27	31.69	31.39	15.61
Merged-chr4-26353883-3	chr4	26353409	26354409	+	757.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B|LTR|ERVK	-7257.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	1.72	3.23	9.25	6.07	2.33	4.82	2.11	3.54	2.5
Merged-chr2-93507815-2	chr2	93507310	93508310	+	757.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-44860.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	2.76	0.92	4.05	1.4	4.82	2.11	3.54	1.25
Merged-chr1-152575181-3	chr1	152574683	152575683	+	757.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	intron (NM_016846, intron 3 of 17)	50034.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	39.47	38.71	39.77	41.16	14.0	26.53	44.36	44.22	19.98
Merged-chr13-30972305-2	chr13	30971797	30972797	+	757.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025588, intron 1 of 27)	ORR1E|LTR|ERVL-MaLR	1750.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	5.72	9.22	3.7	16.19	6.06	1.61	16.9	4.86	2.5
Merged-chr11-117066858-2	chr11	117066353	117067353	+	757.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9930.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	5.72	2.76	4.62	8.1	1.87	0.8	4.22	3.54	0.0
Merged-chr15-58075651-2	chr15	58075151	58076151	+	757.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009572, intron 1 of 3)	intron (NM_009572, intron 1 of 3)	857.0	NM_001042438	22770.0	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	87.52	57.14	82.32	61.4	56.91	76.36	66.54	73.84	53.08
Merged-chr10-108300989-2	chr10	108300491	108301491	+	757.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31198.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	2.29	0.92	0.92	4.05	3.27	3.22	3.17	2.65	2.5
Merged-chr19-12439308-3	chr19	12438810	12439810	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11405.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	155.6	119.8	89.72	158.56	89.57	108.51	158.43	144.15	96.18
Merged-chr14-78668487-3	chr14	78667988	78668988	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	intron (NM_001081336, intron 2 of 29)	-24037.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	8.58	6.45	1.85	4.72	0.93	2.41	3.17	1.77	6.25
Merged-chr1-60410079-3	chr1	60409580	60410580	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198127, intron 1 of 8)	CpG	461.0	NM_001198570	329165.0	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	24.6	18.43	13.87	34.41	15.39	19.29	33.8	18.13	25.61
Merged-chr19-58983759-1	chr19	58983259	58984259	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175172, intron 14 of 14)	B4A|SINE|B4	-40087.0	NM_001327998	73442.0	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	15.45	12.44	21.27	5.4	8.4	11.25	3.17	3.98	5.62
Merged-chr7-118584687-1	chr7	118584187	118585187	+	757.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172476)	promoter-TSS (NM_172476)	-1.0	NM_172476	209760.0	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	4.58	1.84	5.55	5.4	2.8	3.22	11.62	0.44	6.87
Merged-chr11-54923168-1	chr11	54922668	54923668	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	20314.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	27.46	25.8	33.3	14.17	15.86	16.08	9.51	6.63	6.87
Merged-chr10-25292304-1	chr10	25291804	25292804	+	757.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	6859.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	10.3	10.14	6.47	17.54	10.73	14.47	4.22	1.33	3.75
Merged-chr2-148073318-1	chr2	148072818	148073818	+	757.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26349.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.86	2.76	1.85	3.37	4.2	4.82	53.87	85.34	21.23
Merged-chr6-149315019-3	chr6	149314470	149315470	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	5556.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	13.73	22.12	14.8	16.19	15.86	17.68	33.8	38.47	19.36
Merged-chr8-123026055-3	chr8	123025529	123026529	+	757.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	16255.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	85.81	80.18	74.92	72.87	46.65	61.89	70.76	101.26	56.21
Merged-chr8-71702124-4	chr8	71701600	71702600	+	757.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028189)	promoter-TSS (NM_028189)	-300.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	7.44	2.76	9.25	12.82	7.93	9.65	10.56	4.86	1.87
Merged-chr7-16619110-2	chr7	16618583	16619583	+	757.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136929, intron 1 of 2)	CpG	-4090.0	NM_172739	232906.0	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	8.58	3.23	0.0	6.75	0.93	0.8	2.11	2.65	3.75
Merged-chr8-94077007-3	chr8	94076492	94077492	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026116, exon 13 of 17)	exon (NM_026116, exon 13 of 17)	21819.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	20.02	5.99	3.7	6.07	3.73	0.0	8.45	4.86	3.12
Merged-chr2-118762644-3	chr2	118762149	118763149	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001982)	promoter-TSS (NM_001001982)	12.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	4.0	0.92	9.25	4.72	1.4	4.82	5.28	4.86	5.0
Merged-chr1-23247171-3	chr1	23246599	23247599	+	757.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-25170.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	1.72	2.76	11.1	9.45	4.2	3.22	2.11	2.21	1.87
Merged-chrX-52990421-2	chrX	52989911	52990911	+	757.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 1 of 8)	intron (NM_013556, intron 1 of 8)	2333.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	13.73	23.96	29.6	13.49	20.99	17.68	16.9	23.88	9.37
Merged-chrX-56462207-3	chrX	56461694	56462694	+	757.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172779, intron 2 of 16)	intron (NM_172779, intron 2 of 16)	7355.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	12.01	18.43	16.65	12.14	14.0	10.45	14.79	18.13	9.37
Merged-chr1-86500071-3	chr1	86499571	86500571	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26486.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	2.86	4.61	1.85	6.07	5.13	3.22	2.11	5.75	6.25
Merged-chr15-79941167-3	chr15	79940684	79941684	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8538.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	4.0	3.69	2.77	1.35	1.87	0.0	2.11	0.44	5.0
Merged-chr12-33027296-3	chr12	33026801	33027801	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65574.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.0	2.76	1.85	4.05	3.27	1.61	2.11	3.1	1.87
Merged-chr2-26507486-3	chr2	26506982	26507982	+	757.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3555.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	17.73	21.66	14.8	34.41	19.13	32.15	17.96	18.57	23.11
Merged-chr13-34277890-3	chr13	34277420	34278420	+	757.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	67262.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	103.54	72.34	87.87	74.22	57.38	58.68	84.49	64.56	52.46
Merged-chr7-104352858-3	chr7	104352319	104353319	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175677, intron 1 of 7)	URR1A|DNA|hAT-Charlie	530.0	NM_175677	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	117.27	137.31	80.47	135.62	117.09	90.02	227.08	258.67	89.93
Merged-chr7-80440976-1	chr7	80440476	80441476	+	757.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-35540.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	25.17	11.06	9.25	16.19	16.33	24.92	2.11	4.86	6.87
Merged-chr11-69067084-1	chr11	69066584	69067584	+	757.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3725.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	18.31	3.69	3.7	16.87	6.06	0.0	7.39	7.07	5.62
Merged-chr7-45523086-3	chr7	45522554	45523554	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008807)	TTS (NM_008807)	3214.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	47.48	35.94	47.17	40.48	27.06	41.8	30.63	30.07	30.6
Merged-chr1-191850399-1	chr1	191849899	191850899	+	757.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28926.0	NM_010892	18005.0	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	80.66	61.28	61.05	89.06	89.57	46.62	143.64	117.62	45.59
Merged-chr18-65582258-3	chr18	65581766	65582766	+	757.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361053)	promoter-TSS (NM_001361053)	-152.0	NM_001361053	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	80.09	74.19	72.15	91.76	69.98	63.5	95.06	66.33	38.1
Merged-chr7-80582341-2	chr7	80581832	80582832	+	757.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-47213.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	17.16	6.91	10.17	13.49	7.46	12.86	59.15	36.26	23.11
Merged-chr7-125601174-2	chr7	125600644	125601644	+	757.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	173.33	143.3	108.22	82.99	57.38	87.61	149.98	159.18	74.32
Merged-chr18-52559086-2	chr18	52558602	52559602	+	757.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29235.0	NM_001286182	16948.0	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	2.86	4.61	0.0	4.05	4.67	3.22	3.17	3.98	0.0
Merged-chr6-134133918-3	chr6	134133414	134134414	+	757.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	98214.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.87	6.91	5.55	10.8	9.8	6.43	22.18	19.01	6.25
Merged-chr15-98634867-3	chr15	98634347	98635347	+	757.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286226)	promoter-TSS (NM_001286226)	80.0	NM_001286226	12297.0	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	6.29	3.23	3.7	3.37	1.87	3.22	3.17	1.33	0.62
Merged-chr7-110863116-3	chr7	110862607	110863607	+	757.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053247)	promoter-TSS (NM_053247)	-154.0	NM_053247	114332.0	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	3.43	8.75	9.25	8.1	7.46	12.06	7.39	5.31	6.25
Merged-chr12-33128398-3	chr12	33127902	33128902	+	757.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 4 of 5)	L1MC1|LINE|L1	19184.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	10.3	8.29	1.85	5.4	8.4	4.82	9.51	6.19	4.37
Merged-chr1-75245004-2	chr1	75244485	75245485	+	757.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159885, exon 9 of 9)	3' UTR (NM_001159885, exon 9 of 9)	8283.0	NM_001159885	56812.0	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	4.0	0.46	5.55	0.0	0.0	0.0	3.17	0.44	1.25
Merged-chr8-70763610-3	chr8	70763115	70764115	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023065, intron 6 of 7)	B4A|SINE|B4	-2694.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	19.45	15.21	19.42	24.96	10.26	15.27	29.57	15.92	26.85
Merged-chr6-83693982-3	chr6	83693481	83694481	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002871, intron 5 of 5)	intron (NR_002871, intron 5 of 5)	-16124.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	6.29	0.46	0.0	4.72	2.33	1.61	6.34	0.44	2.5
Merged-chr16-91739215-3	chr16	91738716	91739716	+	757.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	B4A|SINE|B4	9845.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	60.64	68.2	44.4	45.21	41.52	42.6	48.58	38.47	42.47
Merged-chr12-25148238-1	chr12	25147738	25148738	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19064.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	7.44	7.37	10.17	5.4	7.93	8.04	23.24	15.48	11.24
Merged-chr16-91466758-2	chr16	91466246	91467246	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077219, intron 1 of 1)	intron (NR_077219, intron 1 of 1)	1642.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	12.01	11.98	7.4	7.42	7.93	12.06	33.8	15.92	10.62
Merged-chr2-83739947-2	chr2	83739437	83740437	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 2 of 29)	intron (NM_008402, intron 2 of 29)	15540.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	18.88	17.51	27.75	18.89	15.86	27.33	26.4	8.4	15.61
Merged-chr2-59336735-1	chr2	59336235	59337235	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 12 of 20)	intron (NM_175464, intron 12 of 20)	49947.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	16.02	18.43	25.9	23.62	19.13	18.49	22.18	6.19	17.49
Merged-chr10-41868151-2	chr10	41867635	41868635	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	Lx9|LINE|L1	-19304.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	13.16	9.68	19.42	21.59	13.06	40.19	20.07	22.11	15.61
Merged-chr9-87027764-1	chr9	87027264	87028264	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359962, intron 2 of 14)	intron (NM_001359962, intron 2 of 14)	5735.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	4.0	2.76	1.85	3.37	6.53	8.04	4.22	3.1	0.62
Merged-chr2-125280839-1	chr2	125280339	125281339	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33324.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	7.44	5.07	1.85	6.07	7.46	4.02	5.28	1.77	3.75
Merged-chr16-13440635-1	chr16	13440135	13441135	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8888.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	5.72	1.84	0.0	2.7	1.4	6.43	1.06	2.21	3.75
Merged-chr18-33807045-2	chr18	33806547	33807547	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013512, intron 19 of 23)	intron (NM_013512, intron 19 of 23)	12155.0	NR_038151	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	2.29	1.84	0.0	4.05	0.93	4.02	1.06	2.65	2.5
Merged-chr10-93272052-1	chr10	93271552	93272552	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39107.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	9.15	9.22	16.65	8.1	12.6	33.76	5.28	3.54	13.12
Merged-chr11-46848259-3	chr11	46847783	46848783	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37484.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	28.6	46.54	49.95	35.09	39.65	51.44	27.46	18.13	18.74
Merged-chr18-43453213-1	chr18	43452713	43453713	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-14927.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.29	4.61	3.7	5.4	3.27	11.25	9.51	6.19	8.12
Merged-chr7-45129593-1	chr7	45129093	45130093	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009438)	promoter-TSS (NM_009438)	-848.0	NM_009438	22121.0	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	52.63	51.15	49.95	49.93	35.45	86.81	72.88	63.67	52.46
Merged-chr5-148837190-1	chr5	148836690	148837690	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59227.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	3.43	1.38	0.0	2.02	0.47	3.22	0.0	0.88	1.25
Merged-chrX-142370580-2	chrX	142370067	142371067	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	19968.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	85.81	95.84	49.95	99.86	95.63	81.99	132.02	147.24	41.84
Merged-chrX-12260525-1	chrX	12260025	12261025	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94471.0	NR_045321	100043946.0	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	-	predicted gene 14635	ncRNA	9.15	5.99	3.7	12.14	5.6	8.04	11.62	2.21	2.5
Merged-chr1-20452614-1	chr1	20452114	20453114	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	96160.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	2.29	2.76	3.7	3.37	6.06	11.25	2.11	2.21	3.75
Merged-chr11-110472288-3	chr11	110471776	110472776	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-6239.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	6.86	5.53	0.0	11.47	5.6	0.0	20.07	9.29	2.5
Merged-chr9-7914658-1	chr9	7914158	7915158	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41488.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	2.86	3.23	6.47	3.37	2.8	4.82	1.06	1.77	7.49
Merged-chr1-149892471-1	chr1	149891971	149892971	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 5 of 17)	intron (NM_008869, intron 5 of 17)	29968.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.58	11.98	5.55	18.89	14.46	16.08	5.28	12.82	9.37
Merged-chr6-113644386-2	chr6	113643902	113644902	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	ORR1G|LTR|ERVL-MaLR	5935.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	205.94	218.87	172.04	178.13	177.74	184.07	175.33	195.0	129.9
Merged-chr6-146113272-1	chr6	146112772	146113772	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	179150.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.29	0.0	0.0	4.05	0.47	1.61	4.22	2.21	3.75
Merged-chr2-156441985-1	chr2	156441485	156442485	+	757.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	21076.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	4.0	1.84	1.85	5.4	1.87	1.61	2.11	2.65	9.37
Merged-chr2-158606635-1	chr2	158606135	158607135	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040358, intron 1 of 2)	intron (NR_040358, intron 1 of 2)	4088.0	NR_040358	100045469.0	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	-	predicted gene 14204	ncRNA	1.72	3.69	0.0	2.02	2.33	0.0	4.22	5.31	1.25
Merged-chr11-60091211-1	chr11	60090711	60091711	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13802.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.57	2.3	3.7	7.42	2.33	7.23	2.11	5.31	3.75
Merged-chr4-149486043-1	chr4	149485543	149486543	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133435)	promoter-TSS (NM_133435)	777.0	NM_026963	69151.0	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	27.46	28.11	11.1	29.01	38.72	48.23	29.57	25.2	20.61
Merged-chr2-103547354-1	chr2	103546854	103547854	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18956.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.15	3.23	1.85	6.75	4.2	0.0	6.34	3.1	0.0
Merged-chr1-174354839-3	chr1	174354312	174355312	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14107.0	NM_207137	258238.0	Mm.377274	NM_207137	ENSMUSG00000066672	Olfr417	GA_x5J8B7W3B3M-312879-313274|GA_x6K02T2P20D-20787051-20786119|MOR267-11	olfactory receptor 417	protein-coding	1.72	5.07	1.85	6.75	4.67	4.82	5.28	4.86	6.25
Merged-chr2-168629024-1	chr2	168628524	168629524	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11735.0	NR_105971	102466784.0		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	3.43	3.69	0.92	2.7	1.87	0.0	1.06	1.33	1.25
Merged-chr7-101540017-1	chr7	101539517	101540517	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15785.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	42.33	48.84	38.85	51.28	30.79	11.25	11.62	6.19	2.5
Merged-chr7-104200021-2	chr7	104199527	104200527	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9822.0	NM_147055	259057.0	Mm.223438	NM_147055	ENSMUSG00000044899	Olfr649	MOR31-7	olfactory receptor 649	protein-coding	1.72	3.23	1.85	2.02	4.2	1.61	2.11	0.0	2.5
Merged-chr6-113655174-1	chr6	113654674	113655674	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	16707.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	52.63	43.77	34.22	64.1	35.92	39.39	61.26	38.47	24.98
Merged-chr5-92477186-3	chr5	92476687	92477687	+	757.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	IAPEz-int|LTR|ERVK	18630.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	2.86	3.69	9.25	2.7	2.8	6.43	1.06	1.33	5.0
Merged-chr2-118548615-2	chr2	118548205	118549205	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138313, intron 2 of 4)	intron (NM_138313, intron 2 of 4)	981.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	21.74	9.68	4.62	17.54	10.26	9.65	32.74	20.78	14.36
Merged-chrX-95026619-1	chrX	95026119	95027119	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178753)	promoter-TSS (NM_178753)	63.0	NM_178753	270624.0	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding	0.0	2.3	1.85	5.4	2.8	1.61	4.22	0.44	0.0
Merged-chr7-19764813-1	chr7	19764313	19765313	+	757.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020486, intron 6 of 14)	intron (NM_020486, intron 6 of 14)	5719.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	11.44	6.45	9.25	5.4	1.87	12.06	9.51	4.42	3.75
Merged-chr2-131087316-2	chr2	131086816	131087816	+	756.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011426)	promoter-TSS (NM_011426)	-551.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	113.27	132.25	128.57	112.0	97.97	135.84	98.23	116.29	86.81
Merged-chr4-106908406-2	chr4	106907892	106908892	+	756.924988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-3078.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	4.58	3.69	9.25	12.14	2.8	18.49	7.39	12.38	14.36
Merged-chr2-126496482-3	chr2	126495980	126496980	+	756.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3367.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	60.64	47.0	49.02	50.6	46.65	65.91	26.4	23.88	16.86
Merged-chr4-46601338-3	chr4	46600786	46601786	+	756.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	CpG	643.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	21.17	21.66	41.62	18.89	17.26	30.54	9.51	7.52	5.0
Merged-chr7-107044589-3	chr7	107044101	107045101	+	756.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8465.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	4.0	5.99	3.7	2.02	3.27	8.84	6.34	1.33	7.49
Merged-chr6-125604232-4	chr6	125603782	125604782	+	756.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011708, exon 15 of 52)	exon (NM_011708, exon 15 of 52)	51334.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	7.44	6.91	8.32	12.14	4.2	13.66	15.84	4.86	6.87
Merged-chr19-42515563-3	chr19	42515062	42516062	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3243.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	19.45	12.9	21.27	12.82	13.06	22.51	13.73	9.73	24.98
Merged-chr17-27970498-2	chr17	27969985	27970985	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	61179.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	19.45	16.13	15.72	30.36	8.86	12.06	10.56	1.33	2.5
Merged-chr15-55390304-2	chr15	55389804	55390804	+	756.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 14 of 47)	intron (NM_181277, intron 14 of 47)	82554.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	12.01	13.36	7.4	27.66	25.19	39.39	28.52	22.99	23.73
Merged-chr11-20960289-1	chr11	20959789	20960789	+	756.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129181.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	14.87	14.75	8.32	18.89	25.19	22.51	13.73	9.73	19.36
Merged-chr5-123049423-3	chr5	123048926	123049926	+	756.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2410.0	NM_001347456	74890.0	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	12.59	5.53	9.25	4.05	5.6	0.8	1.06	1.33	1.25
Merged-chr16-76538130-2	chr16	76537648	76538648	+	756.825012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10647.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	6.86	7.83	0.0	2.02	4.67	7.23	3.17	4.86	3.12
Merged-chr1-58348874-3	chr1	58348348	58349348	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008419, intron 28 of 35)	intron (NM_001008419, intron 28 of 35)	-44288.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	2.29	3.69	6.47	3.37	5.13	0.0	7.39	6.63	5.0
Merged-chr3-152783932-3	chr3	152783419	152784419	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025662, intron 10 of 10)	intron (NM_025662, intron 10 of 10)	69819.0	NM_025662	329777.0	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik|Gm38470|PIG-K	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	8.58	6.45	10.17	5.4	7.0	4.02	12.67	3.98	0.0
Merged-chr6-42391434-3	chr6	42390962	42391962	+	756.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-8776.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	155.03	160.35	77.7	163.96	136.69	102.08	147.87	165.37	54.96
Merged-chr7-4502806-3	chr7	4502241	4503241	+	756.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-1061.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	66.36	75.11	55.5	57.35	40.59	61.89	89.78	75.61	59.33
Merged-chr8-35565285-2	chr8	35564787	35565787	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-22511.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	13.16	14.75	22.2	24.96	33.12	31.35	23.24	29.18	15.61
Merged-chr1-171230344-2	chr1	171229844	171230844	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010185, intron 3 of 4)	RMER20A|LTR|ERVK	4005.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	27.46	28.11	27.75	31.04	14.0	47.42	54.92	35.37	26.85
Merged-chr9-40350897-2	chr9	40350393	40351393	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-4648.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.0	4.15	3.7	4.05	5.13	0.0	4.22	5.75	7.49
Merged-chr9-123989857-2	chr9	123989368	123990368	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11460.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	62.35	62.67	55.5	63.42	51.78	70.73	40.14	58.37	25.61
Merged-chr8-113636388-2	chr8	113635907	113636907	+	756.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048143, intron 2 of 5)	intron (NM_001048143, intron 2 of 5)	608.0	NM_173015	270096.0	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	26.89	34.56	24.05	18.89	11.66	28.94	38.02	45.1	31.85
Merged-chr12-8913255-2	chr12	8912749	8913749	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8058.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	23.45	13.82	27.75	6.75	13.53	8.04	23.24	22.11	10.62
Merged-chr4-150282225-2	chr4	150281710	150282710	+	756.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	294.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	109.26	66.35	79.55	90.41	85.84	80.38	99.28	83.13	43.09
Merged-chr5-147891946-3	chr5	147891427	147892427	+	756.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357002, intron 2 of 5)	(GGGTG)n|Simple_repeat|Simple_repeat	2888.0	NM_001357002	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	5.15	4.61	6.47	4.72	4.2	9.65	6.34	4.42	6.25
Merged-chr8-84846011-2	chr8	84845513	84846513	+	756.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007591, exon 3 of 9)	exon (NM_007591, exon 3 of 9)	918.0	NM_007591	12317.0	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	88.67	79.25	68.45	66.12	42.92	61.09	81.33	78.26	64.33
Merged-chr8-84277037-1	chr8	84276537	84277537	+	756.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-6635.0	NM_026350	67736.0	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	18.88	14.28	12.95	25.64	13.06	38.58	30.63	13.27	18.11
Merged-chr17-24526586-1	chr17	24526086	24527086	+	756.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172113, intron 1 of 20)	intron (NM_001172113, intron 1 of 20)	1352.0	NM_153792	224619.0	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	8.01	5.53	1.85	27.66	26.12	48.23	5.28	6.63	1.25
Merged-chr3-127077582-1	chr3	127077082	127078082	+	756.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001327939, exon 5 of 46)	exon (NM_001327939, exon 5 of 46)	-79130.0	NM_178655	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	1.14	1.38	0.0	4.72	1.4	2.41	5.28	4.86	7.49
Merged-chr4-154910796-3	chr4	154910290	154911290	+	756.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	-11747.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	208.23	202.75	154.47	168.0	174.01	109.32	222.86	290.5	104.3
Merged-chr10-96343432-3	chr10	96342935	96343935	+	756.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	117228.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	16.59	20.27	4.62	16.19	9.33	12.06	35.91	25.2	15.61
Merged-chr2-162930020-2	chr2	162929504	162930504	+	756.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1504.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	12.59	4.15	11.1	8.77	6.06	4.82	8.45	3.1	1.25
Merged-chr13-21172843-2	chr13	21172358	21173358	+	756.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Leu-TTG|tRNA|tRNA	-7073.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	15.45	16.13	14.8	10.12	7.0	16.88	5.28	7.07	9.37
Merged-chr8-13157344-2	chr8	13156842	13157842	+	756.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1819.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	35.47	45.16	24.97	41.83	22.39	31.35	49.64	49.08	48.71
Merged-chr17-34392412-3	chr17	34391832	34392832	+	756.6444700000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6488.0	NM_001001177	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	12.01	7.83	3.7	6.75	4.67	4.82	7.39	8.84	5.0
Merged-chr10-79755083-3	chr10	79754588	79755588	+	756.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023304)	promoter-TSS (NM_023304)	-31.0	NM_023304	67112.0	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	4.0	1.84	2.77	4.05	2.33	2.41	5.28	2.21	3.75
Merged-chr1-152533944-2	chr1	152533455	152534455	+	756.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 12 of 17)	intron (NM_016846, intron 12 of 17)	91262.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	59.49	51.61	58.27	47.23	27.52	55.46	50.7	50.41	38.1
Merged-chr5-117123293-2	chr5	117122805	117123805	+	756.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	3176.0	NM_001199685	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	7.44	6.45	12.95	12.14	9.8	19.29	4.22	2.21	2.5
Merged-chr2-152808750-3	chr2	152808238	152809238	+	756.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	RLTR31D_MM|LTR|ERVK	19751.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	59.49	79.25	57.35	83.66	79.77	69.93	78.16	77.82	33.72
Merged-chr14-21101907-1	chr14	21101407	21102407	+	756.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 2 of 10)	intron (NM_134079, intron 2 of 10)	25755.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	4.0	2.76	0.0	14.17	10.26	9.65	5.28	4.42	5.0
Merged-chr6-124756146-2	chr6	124755670	124756670	+	756.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007881, intron 1 of 9)	intron (NM_007881, intron 1 of 9)	317.0	NM_007881	13498.0	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	38.9	10.14	21.27	33.74	12.13	16.08	25.35	8.4	11.24
Merged-chr15-66536632-2	chr15	66536129	66537129	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172514, intron 7 of 9)	L1MC3|LINE|L1	24417.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	6.29	7.37	2.77	14.17	19.13	14.47	10.56	7.52	5.62
Merged-chr4-3875131-2	chr4	3874614	3875614	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3009.0	NM_020021	17451.0	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	10.3	10.14	0.0	8.1	14.0	11.25	11.62	4.86	1.25
Merged-chr18-17641110-2	chr18	17640602	17641602	+	756.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60112.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.58	3.69	3.7	7.42	8.86	8.04	1.06	2.65	2.5
Merged-chr17-79303431-2	chr17	79302927	79303927	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51664.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	4.58	2.3	0.0	4.72	1.4	1.61	4.22	1.33	0.0
Merged-chr2-154552657-2	chr2	154552155	154553155	+	756.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001171640, exon 1 of 1)	exon (NM_001171640, exon 1 of 1)	879.0	NM_001171640	70362.0	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	6.86	1.38	0.0	8.1	5.13	1.61	6.34	3.98	2.5
Merged-chr7-97129468-3	chr7	97128968	97129968	+	756.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	CT-rich|Low_complexity|Low_complexity	47717.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	35.47	27.19	23.12	30.36	20.53	17.68	24.29	31.84	43.72
Merged-chr14-49140892-3	chr14	49140414	49141414	+	756.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-31332.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	6.29	4.61	5.55	4.72	9.33	7.23	5.28	3.1	8.74
Merged-chr1-43912002-3	chr1	43911470	43912470	+	756.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22024.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	120.7	166.34	80.47	116.73	101.23	98.06	167.93	171.56	82.44
Merged-chrX-164091899-1	chrX	164091399	164092399	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001313719)	promoter-TSS (NM_001313719)	-290.0	NM_001313719	57394.0	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	6.86	4.15	5.55	6.07	2.8	0.0	5.28	8.84	5.0
Merged-chr11-87422589-2	chr11	87422081	87423081	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031386, intron 1 of 30)	intron (NM_031386, intron 1 of 30)	-5010.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	328.93	346.51	129.49	260.44	287.84	174.42	279.89	390.88	76.82
Merged-chr6-81439484-2	chr6	81438984	81439984	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	456179.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	4.58	4.15	1.85	6.75	1.4	3.22	10.56	6.63	6.87
Merged-chr1-33503733-1	chr1	33503233	33504233	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008922, intron 10 of 13)	Tigger14a|DNA|TcMar-Tigger	166061.0	NM_008922	19076.0	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	17.73	30.87	23.12	24.29	22.39	35.37	17.96	30.51	36.22
Merged-chr11-18958012-2	chr11	18957512	18958512	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010789, intron 7 of 11)	intron (NM_010789, intron 7 of 11)	60957.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	13.73	9.68	3.7	8.77	4.67	8.04	4.22	4.42	11.24
Merged-chrX-140509868-2	chrX	140509379	140510379	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	32789.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	22.88	23.96	19.42	25.64	15.86	24.92	20.07	19.46	26.85
Merged-chr6-92127384-1	chr6	92126884	92127884	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347342, intron 2 of 14)	intron (NM_001347342, intron 2 of 14)	34951.0	NM_001347342	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	28.6	37.78	18.5	19.57	27.99	35.37	34.85	32.72	29.98
Merged-chr8-14893511-2	chr8	14892946	14893946	+	756.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012000, intron 1 of 2)	intron (NM_012000, intron 1 of 2)	4910.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	118.42	105.98	121.17	101.88	94.7	133.43	97.17	128.23	61.83
Merged-chr6-28485518-2	chr6	28485019	28486019	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	L2a|LINE|L2	5171.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	23.45	27.65	18.5	13.49	7.93	23.31	23.24	22.55	15.61
Merged-chr16-4568122-2	chr16	4567622	4568622	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8402.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	5.15	5.07	1.85	4.05	1.4	8.04	4.22	1.77	0.62
Merged-chr11-49986812-2	chr11	49986324	49987324	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38507.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	8.58	3.69	0.0	6.75	1.4	0.0	5.28	2.65	2.5
Merged-chr2-105716800-1	chr2	105716300	105717300	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023876, intron 9 of 9)	intron (NM_023876, intron 9 of 9)	34337.0	NM_001310145	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.29	4.61	1.85	8.1	2.8	3.22	4.22	3.54	0.0
Merged-chr5-92369260-2	chr5	92368757	92369757	+	756.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-5961.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	9.15	3.23	0.0	8.77	10.26	4.82	13.73	6.63	5.62
Merged-chr15-36782177-3	chr15	36781700	36782700	+	756.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356569, intron 3 of 6)	PB1D11|SINE|Alu	8732.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	18.88	22.58	25.9	15.52	12.6	12.86	32.74	14.59	8.74
Merged-chr5-136248306-3	chr5	136247808	136248808	+	756.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291240, exon 23 of 23)	3' UTR (NM_001291240, exon 23 of 23)	-3368.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	18.88	29.95	14.8	30.36	20.06	37.78	40.14	29.18	26.85
Merged-chr4-108456151-2	chr4	108455639	108456639	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3287.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	50.34	50.23	48.1	35.76	31.26	30.54	74.99	66.77	32.48
Merged-chr11-95841464-2	chr11	95840954	95841954	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284393)	promoter-TSS (NM_001284393)	-841.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	52.63	86.63	51.8	139.67	91.44	131.02	239.75	194.11	82.44
Merged-chr15-89453499-2	chr15	89453007	89454007	+	756.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021921)	promoter-TSS (NM_021921)	-404.0	NM_021921	60597.0	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	2.86	0.0	1.85	2.02	6.53	4.02	2.11	2.21	5.0
Merged-chr5-3462233-2	chr5	3461729	3462729	+	756.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-81604.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	39.47	36.86	20.35	49.25	46.18	27.33	14.79	12.38	9.99
Merged-chr19-4135733-2	chr19	4135235	4136235	+	756.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_144532, exon 6 of 6)	3' UTR (NM_144532, exon 6 of 6)	3874.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	23.45	25.8	14.8	16.19	11.2	9.65	25.35	19.46	20.61
Merged-chr15-83518306-2	chr15	83517813	83518813	+	756.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	161.0	NM_001357953	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	5.15	0.92	3.7	1.35	0.93	2.41	2.11	1.33	1.25
Merged-chr7-74944880-3	chr7	74944378	74945378	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEd|LINE|L1	-85333.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	10.3	15.21	15.72	12.14	3.73	1.61	3.17	5.75	23.73
Merged-chr11-44356388-3	chr11	44355887	44356887	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-43676.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	10.3	5.99	12.02	11.47	7.0	5.63	9.51	11.05	1.87
Merged-chr5-142441410-1	chr5	142440910	142441910	+	756.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	RSINE1|SINE|B4	-22521.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	15.45	20.27	24.97	30.36	37.32	69.13	19.01	27.86	21.23
Merged-chr11-86655829-3	chr11	86655315	86656315	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	15460.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	17.16	14.75	4.62	14.84	3.73	16.08	12.67	12.82	4.37
Merged-chr15-67300669-3	chr15	67300185	67301185	+	756.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	L1M4|LINE|L1	73916.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	18.88	16.13	12.95	33.74	25.66	23.31	17.96	13.27	8.74
Merged-chr19-16139868-3	chr19	16139341	16140341	+	756.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	7010.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	213.95	213.8	107.29	204.44	216.93	155.93	192.23	183.5	129.9
Merged-chr1-37542723-2	chr1	37542221	37543221	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1705.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	22.88	14.75	7.4	6.07	5.13	3.22	9.51	11.5	15.61
Merged-chr15-12206814-2	chr15	12206361	12207361	+	756.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1833.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	13.16	4.61	0.0	8.1	3.73	3.22	14.79	12.82	6.87
Merged-chr3-104460319-2	chr3	104459816	104460816	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025067, intron 17 of 17)	B4A|SINE|B4	51602.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	16.02	8.75	14.8	19.57	13.06	11.25	9.51	7.07	7.49
Merged-chr16-33186297-3	chr16	33185794	33186794	+	756.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	1223.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	97.82	130.86	60.12	111.33	95.17	86.81	107.73	138.84	88.68
Merged-chr9-107581193-3	chr9	107580689	107581689	+	756.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178020)	promoter-TSS (NM_178020)	-107.0	NM_178020	109685.0	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	204.22	163.12	95.27	155.19	121.76	142.27	171.1	185.27	109.29
Merged-chr7-97843361-3	chr7	97842865	97843865	+	756.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357363, intron 1 of 14)	intron (NM_001357363, intron 1 of 14)	426.0	NM_011035	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	31.46	23.96	26.82	32.39	16.33	19.29	31.69	49.96	30.6
Merged-chr19-5747211-1	chr19	5746711	5747711	+	756.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008520, intron 7 of 27)	intron (NM_008520, intron 7 of 27)	6307.0	NM_008520	16998.0	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	4.0	2.3	6.47	9.45	0.93	1.61	5.28	5.75	5.0
Merged-chr2-155082598-3	chr2	155082116	155083116	+	756.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8119.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	8.58	1.38	0.0	7.42	2.33	3.22	4.22	2.65	1.25
Merged-chr15-5188170-3	chr15	5187671	5188671	+	756.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355621, intron 2 of 5)	intron (NM_001355621, intron 2 of 5)	2611.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	14.3	14.28	7.4	16.87	6.53	12.06	13.73	19.46	5.0
Merged-chr15-68359670-2	chr15	68359152	68360152	+	756.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18363.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	29.75	34.56	39.77	30.36	26.12	16.88	63.37	72.07	40.59
Merged-chr13-56173212-3	chr13	56172733	56173733	+	756.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168615)	TTS (NM_001168615)	5652.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	20.02	26.73	36.07	16.19	22.86	43.4	28.52	24.32	13.74
Merged-chr1-119495125-3	chr1	119494610	119495610	+	756.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022327, intron 1 of 4)	intron (NM_022327, intron 1 of 4)	9672.0	NM_022327	64143.0	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	17.16	6.91	21.27	8.77	8.4	15.27	13.73	4.86	13.74
Merged-chr4-66894826-2	chr4	66894365	66895365	+	756.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67314.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.58	2.76	1.85	6.75	6.06	1.61	7.39	1.33	3.75
Merged-chr16-25009431-2	chr16	25008918	25009918	+	756.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-50221.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	17.73	18.43	24.05	30.36	8.86	13.66	22.18	15.48	24.36
Merged-chr13-51756741-2	chr13	51756220	51757220	+	756.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	37027.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	2.86	0.92	9.25	6.75	2.8	3.22	5.28	5.75	1.25
Merged-chr14-55114965-3	chr14	55114506	55115506	+	756.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177049, exon 2 of 6)	exon (NM_177049, exon 2 of 6)	1929.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	4.58	4.61	3.7	8.77	2.33	6.43	3.17	1.77	3.12
Merged-chr16-35874621-3	chr16	35874112	35875112	+	756.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR84b|LTR|ERVL	-3230.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	5.72	5.07	5.55	6.75	4.2	4.82	5.28	2.21	3.75
Merged-chr10-99128062-3	chr10	99127539	99128539	+	756.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 3 of 12)	intron (NR_153333, intron 3 of 12)	19904.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	12.01	9.22	0.92	24.29	20.06	11.25	12.67	11.94	8.74
Merged-chr5-8672081-3	chr5	8671604	8672604	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 5 of 29)	intron (NM_011076, intron 5 of 29)	-49152.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	7.44	7.37	0.92	5.4	5.6	10.45	3.17	2.65	3.75
Merged-chr11-90245053-3	chr11	90244529	90245529	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4447.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	61.78	55.75	31.45	72.19	58.31	64.3	35.91	21.22	29.98
Merged-chr5-149068343-3	chr5	149067804	149068804	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	4.58	3.69	0.92	5.4	5.13	1.61	4.22	5.31	6.25
Merged-chr13-65176379-3	chr13	65175892	65176892	+	756.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175290)	TTS (NM_175290)	24166.0	NM_146819	258816.0	Mm.377705	NM_146819	ENSMUSG00000049806	Olfr466	MOR209-1	olfactory receptor 466	protein-coding	0.57	0.46	1.85	4.72	0.47	2.41	0.0	2.21	0.62
Merged-chr6-122801585-7	chr6	122801092	122802092	+	756.035706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-18592.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	55.49	54.37	45.32	45.21	32.19	43.4	50.7	36.7	28.73
Merged-chr9-50479890-1	chr9	50479390	50480390	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14635.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	16.02	10.14	4.62	19.57	4.67	6.43	4.22	11.5	11.87
Merged-chr13-52981690-1	chr13	52981190	52982190	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_017373)	promoter-TSS (NM_017373)	-651.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	10.87	15.21	35.15	23.62	17.73	35.37	35.91	13.27	11.24
Merged-chr10-127570565-1	chr10	127570065	127571065	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-36006.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.15	5.99	7.4	2.7	3.73	11.25	6.34	4.86	15.61
Merged-chr7-122209273-3	chr7	122208754	122209754	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10242.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	189.35	150.22	119.32	301.6	212.26	161.56	233.42	267.51	117.41
Merged-chr4-136260596-1	chr4	136260096	136261096	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011542, intron 5 of 10)	intron (NM_011542, intron 5 of 10)	12639.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	1.14	4.15	1.85	2.7	1.87	0.0	1.06	0.88	0.62
Merged-chr11-80523078-2	chr11	80522591	80523591	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	-13985.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	24.03	17.97	11.1	14.17	18.66	39.39	16.9	15.48	14.36
Merged-chr2-156539378-1	chr2	156538878	156539878	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001006664, intron 21 of 21)	intron (NM_001006664, intron 21 of 21)	-8198.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	16.59	10.6	22.2	4.05	5.13	8.04	13.73	20.78	6.87
Merged-chr5-105506635-2	chr5	105506150	105507150	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC-int|LTR|ERVL-MaLR	-12821.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	30.89	35.94	14.8	52.63	33.59	36.97	2.11	2.21	4.37
Merged-chr13-42248871-3	chr13	42248363	42249363	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52613.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	18.31	6.91	12.02	7.42	2.8	11.25	8.45	6.19	6.25
Merged-chr2-160144180-1	chr2	160143680	160144680	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	127527.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	9.72	6.45	4.62	6.75	6.06	6.43	6.34	6.63	7.49
Merged-chr11-106414370-1	chr11	106413870	106414870	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023913, exon 11 of 22)	exon (NM_023913, exon 11 of 22)	-31589.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	14.3	18.43	24.05	14.84	15.39	32.15	15.84	10.17	6.25
Merged-chr16-32703541-3	chr16	32703066	32704066	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30412.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	37.18	29.95	46.25	32.39	25.66	37.78	50.7	43.33	13.74
Merged-chr9-68884620-1	chr9	68884120	68885120	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	119274.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	18.31	22.58	9.25	22.94	23.33	38.58	23.24	23.43	24.98
Merged-chr11-78188488-3	chr11	78188072	78189072	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033475)	promoter-TSS (NM_033475)	145.0	NM_001159482	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	28.03	15.21	5.55	14.17	27.99	10.45	25.35	16.36	3.12
Merged-chr12-100421298-1	chr12	100420798	100421798	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	99524.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	14.3	14.75	5.55	23.62	19.13	26.53	8.45	16.36	18.11
Merged-chr14-73215778-1	chr14	73215278	73216278	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 18 of 26)	intron (NM_009029, intron 18 of 26)	-8927.0	NR_030459	751541.0		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	6.29	6.91	1.85	5.4	5.6	1.61	6.34	2.21	2.5
Merged-chr13-99375829-1	chr13	99375329	99376329	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173757, intron 4 of 10)	intron (NM_173757, intron 4 of 10)	31043.0	NM_173757	218506.0	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	2.29	2.76	0.0	1.35	1.87	0.0	2.11	1.77	1.25
Merged-chr12-87237072-1	chr12	87236572	87237572	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027744, intron 2 of 7)	intron (NM_027744, intron 2 of 7)	1529.0	NM_027744	71275.0	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	5.72	5.07	11.1	2.7	6.53	8.04	8.45	1.33	1.25
Merged-chr8-14886030-1	chr8	14885530	14886530	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2506.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	7.44	10.6	12.02	6.07	9.33	9.65	20.07	11.94	14.99
Merged-chr4-88343518-1	chr4	88343018	88344018	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 26 of 43)	intron (NM_001081184, intron 26 of 43)	95408.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.86	4.61	7.4	5.4	1.87	0.0	3.17	3.1	5.0
Merged-chr7-64060215-1	chr7	64059715	64060715	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93620.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	5.15	5.07	5.55	8.77	2.8	1.61	2.11	0.88	3.75
Merged-chr15-25284525-3	chr15	25284030	25285030	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	129234.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	11.44	12.44	1.85	19.57	7.0	8.04	14.79	22.99	8.12
Merged-chr13-24687541-1	chr13	24687041	24688041	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 8 of 14)	intron (NM_001080381, intron 8 of 14)	48893.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	4.58	1.84	5.55	2.7	0.93	1.61	4.22	1.77	0.0
Merged-chr19-16343582-1	chr19	16343082	16344082	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-28578.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	9.15	7.37	0.0	14.84	7.93	11.25	10.56	3.1	14.99
Merged-chr10-22345946-1	chr10	22345446	22346446	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-15948.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	3.43	2.3	4.62	2.02	1.4	4.82	2.11	1.33	0.0
Merged-chr13-58073439-2	chr13	58072941	58073941	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 5 of 16)	intron (NM_001195075, intron 5 of 16)	28987.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	24.6	17.97	11.1	43.86	47.12	53.05	5.28	7.07	14.99
Merged-chr13-34993621-1	chr13	34993121	34994121	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110331, intron 1 of 9)	intron (NM_001110331, intron 1 of 9)	523.0	NM_011868	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	160.18	184.31	91.57	116.73	139.95	153.52	148.92	156.09	121.78
Merged-chr19-29383001-3	chr19	29382503	29383503	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15565.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	53.2	53.91	75.85	58.7	28.46	38.58	105.62	94.62	67.45
Merged-chr15-67355487-1	chr15	67354987	67355987	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 7 of 8)	MIR|SINE|MIR	128718.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	4.0	1.84	3.7	8.77	9.33	3.22	3.17	2.65	7.49
Merged-chr9-32508366-2	chr9	32507847	32508847	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	33105.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	105.26	112.43	105.44	101.21	76.51	94.85	107.73	99.93	61.83
Merged-chr8-117248536-1	chr8	117248036	117249036	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8483.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.57	3.23	1.85	5.4	2.33	5.63	1.06	3.98	0.62
Merged-chr1-74367738-1	chr1	74367238	74368238	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033345, intron 7 of 9)	intron (NM_001033345, intron 7 of 9)	5630.0	NM_001033345	241112.0	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	94.39	98.61	95.27	124.15	86.3	127.0	114.07	130.0	98.05
Merged-chr14-54610117-1	chr14	54609617	54610617	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4209.0	NM_028890	74359.0	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	Rtfc	RIKEN cDNA 4931414P19 gene	protein-coding	5.15	3.23	1.85	6.07	5.13	2.41	5.28	6.19	1.87
Merged-chr1-93083800-2	chr1	93083298	93084298	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294149, intron 1 of 47)	intron (NM_001294149, intron 1 of 47)	-1318.0	NM_001294150	16560.0	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	3.43	2.76	0.0	2.7	6.06	0.0	2.11	0.0	1.25
Merged-chr6-99130258-1	chr6	99129758	99130758	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-101960.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.15	3.23	4.62	4.05	1.87	4.82	8.45	1.77	8.74
Merged-chr3-30917353-1	chr3	30916853	30917853	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165954, intron 11 of 14)	intron (NM_001165954, intron 11 of 14)	52062.0	NM_001165954	241915.0	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic 3	protein-coding	7.44	2.76	5.55	8.1	3.73	0.0	9.51	12.38	6.25
Merged-chr18-35959224-1	chr18	35958724	35959724	+	756.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5606.0	NM_001289602	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	5.15	1.84	9.25	7.42	0.93	0.0	2.11	1.77	2.5
Merged-chr3-144699230-2	chr3	144698749	144699749	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019464, intron 5 of 8)	intron (NM_019464, intron 5 of 8)	21086.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	244.84	281.08	163.72	229.4	211.79	198.54	234.47	317.48	158.63
Merged-chr10-39456510-1	chr10	39456010	39457010	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	86711.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	9.72	15.21	3.7	20.24	8.4	12.86	25.35	12.38	6.25
Merged-chr5-135013272-2	chr5	135012741	135013741	+	756.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_026688)	promoter-TSS (NR_026688)	-84.0	NR_026688	69812.0	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	13.16	16.13	11.1	19.57	9.33	20.9	36.97	28.3	24.36
Merged-chr10-7937800-1	chr10	7937300	7938300	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138667, intron 1 of 6)	intron (NM_138667, intron 1 of 6)	15265.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	13.16	31.33	24.97	21.59	8.4	26.53	24.29	22.11	14.36
Merged-chr4-95248258-1	chr4	95247758	95248758	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-196036.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.43	5.99	0.0	3.37	3.27	6.43	4.22	2.65	0.0
Merged-chr4-134702123-2	chr4	134701610	134702610	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 1 of 11)	intron (NM_207237, intron 1 of 11)	2180.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	9.15	8.29	12.95	14.84	10.26	8.04	5.28	1.33	6.87
Merged-chr6-113418841-1	chr6	113418341	113419341	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001346511, exon 2 of 9)	exon (NM_001346511, exon 2 of 9)	499.0	NM_001033204	101122.0	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	18.31	11.06	5.55	13.49	15.39	20.9	13.73	6.63	6.87
Merged-chr12-72665238-2	chr12	72664728	72665728	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025522)	promoter-TSS (NM_025522)	-400.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	50.34	56.22	44.4	43.86	58.31	61.09	49.64	68.98	34.97
Merged-chr2-173740122-1	chr2	173739622	173740622	+	756.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019806, intron 1 of 5)	intron (NM_019806, intron 1 of 5)	2551.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	49.77	39.17	26.82	93.79	78.84	48.23	100.34	77.82	23.73
Merged-chr12-102369565-4	chr12	102369077	102370077	+	755.979187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161365, exon 6 of 10)	exon (NM_001161365, exon 6 of 10)	70236.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	68.65	88.47	101.74	99.18	111.03	154.33	145.75	105.24	54.33
Merged-chr6-4967393-3	chr6	4966901	4967901	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	64081.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	14.3	5.53	3.7	8.77	2.33	1.61	5.28	4.42	3.75
Merged-chr15-62043382-3	chr15	62042884	62043884	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	4127.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	90.38	141.0	81.4	80.97	71.84	65.91	105.62	126.46	71.2
Merged-chrX-48138769-3	chrX	48138279	48139279	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7657.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	17.73	21.2	31.45	19.57	12.13	22.51	29.57	28.3	29.98
Merged-chr11-118494278-3	chr11	118493752	118494752	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17420.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	77.23	52.07	45.32	76.24	55.98	91.63	77.1	73.84	49.96
Merged-chr2-12108566-3	chr2	12108089	12109089	+	755.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_138462, exon 31 of 31)	non-coding (NR_138462, exon 31 of 31)	-192657.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.58	2.76	0.0	8.77	3.27	4.82	3.17	3.98	1.25
Merged-chr10-71383704-2	chr10	71383201	71384201	+	755.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347191, exon 6 of 6)	3' UTR (NM_001347191, exon 6 of 6)	35938.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	7.44	5.53	1.85	7.42	5.6	16.08	4.22	3.98	3.75
Merged-chr12-37279045-3	chr12	37278547	37279547	+	755.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178767, intron 3 of 12)	intron (NM_178767, intron 3 of 12)	37408.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	1.14	2.76	1.85	4.72	6.06	1.61	4.22	0.88	4.37
Merged-chr10-60374352-1	chr10	60373852	60374852	+	755.875	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-25374.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	13.16	2.3	3.7	12.82	8.4	12.86	9.51	2.65	7.49
Merged-chr10-8505036-3	chr10	8504618	8505618	+	755.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 1 of 7)	intron (NM_177387, intron 1 of 7)	13707.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	50.91	67.27	40.7	45.21	38.25	43.4	48.58	46.87	28.1
Merged-chr4-139602827-3	chr4	139602321	139603321	+	755.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	-20073.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	18.31	19.35	10.17	6.75	5.13	0.8	11.62	10.61	9.99
Merged-chr1-52765985-2	chr1	52765476	52766476	+	755.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38618.0	NM_001357464	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	22.88	12.44	6.47	35.76	48.98	73.14	43.3	36.7	26.85
Merged-chr1-131339882-2	chr1	131339392	131340392	+	755.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 10 of 22)	intron (NM_001081011, intron 10 of 22)	-60329.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	9.72	9.22	6.47	13.49	10.73	29.74	10.56	2.65	8.74
Merged-chr18-60753004-2	chr18	60752516	60753516	+	755.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER94B|DNA|hAT-Blackjack	-4351.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	38.9	36.4	16.65	108.63	87.24	68.32	57.03	58.81	22.48
Merged-chr10-40256863-3	chr10	40256256	40257256	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359493, intron 2 of 5)	intron (NM_001359493, intron 2 of 5)	806.0	NM_001359493	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	10.87	9.68	18.5	13.49	9.33	20.09	10.56	15.92	6.87
Merged-chr2-168010099-3	chr2	168009607	168010607	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080708, intron 1 of 21)	intron (NM_001080708, intron 1 of 21)	486.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	1.72	4.61	1.85	1.35	3.27	3.22	4.22	0.0	1.25
Merged-chr11-70236815-3	chr11	70236367	70237367	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177606, intron 2 of 3)	intron (NM_001177606, intron 2 of 3)	1047.0	NM_001177601	104457.0	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	78.94	70.5	61.97	73.54	45.25	49.83	82.38	77.82	73.07
Merged-chr19-11404656-3	chr19	11404160	11405160	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3001.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	19.45	26.26	12.95	19.57	18.19	36.97	36.97	33.16	22.48
Merged-chr10-88621518-3	chr10	88621034	88622034	+	755.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16382.0	NM_175418	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	28.03	45.62	22.2	26.31	35.92	22.51	28.52	36.26	21.23
Merged-chr18-4918525-3	chr18	4918019	4919019	+	755.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	106033.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	11.44	7.83	6.47	14.17	11.66	19.29	11.62	5.31	19.98
Merged-chrX-130188611-3	chrX	130188106	130189106	+	755.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 23 of 26)	intron (NM_172493, intron 23 of 26)	438864.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	6.86	3.23	0.0	5.4	2.33	3.22	9.51	17.24	6.87
Merged-chr14-64858588-3	chr14	64858148	64859148	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 5 of 9)	intron (NM_177338, intron 5 of 9)	91209.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	21.74	18.89	22.2	18.89	15.86	21.7	15.84	5.31	11.24
Merged-chr10-81597361-2	chr10	81596860	81597860	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359135)	promoter-TSS (NM_001359135)	7.0	NM_001359135	114606.0	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	8.01	1.38	7.4	10.8	1.87	8.04	1.06	0.44	2.5
Merged-chr5-86920961-2	chr5	86920466	86921466	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152811, intron 3 of 5)	intron (NM_152811, intron 3 of 5)	5537.0	NM_152811	71773.0	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	1.72	4.15	1.85	3.37	5.13	6.43	6.34	12.38	11.87
Merged-chr5-110840677-2	chr5	110840183	110841183	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153571)	promoter-TSS (NM_153571)	666.0	NM_016681	50883.0	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	33.18	38.25	32.37	55.33	62.51	51.44	66.54	61.46	28.73
Merged-chr14-49063069-3	chr14	49062571	49063571	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 1 of 17)	intron (NM_207214, intron 1 of 17)	-3478.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	12.59	15.21	9.25	14.17	10.26	15.27	10.56	4.42	4.37
Merged-chr10-117709080-3	chr10	117708588	117709588	+	755.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1670.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	17.16	24.88	13.87	33.74	25.66	19.29	46.47	34.49	19.36
Merged-chr2-155620016-1	chr2	155619516	155620516	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 11 of 41)	intron (NM_001085378, intron 11 of 41)	-2864.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	7.44	4.61	3.7	4.05	3.27	3.22	3.17	2.21	3.12
Merged-chr3-9608547-2	chr3	9608045	9609045	+	755.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	1540.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.86	2.76	2.77	2.7	1.4	1.61	4.22	10.61	5.0
Merged-chr14-64657804-2	chr14	64657304	64658304	+	755.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	5273.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	42.9	29.03	30.52	18.89	12.6	23.31	26.4	15.48	7.49
Merged-chr17-13850379-3	chr17	13849877	13850877	+	755.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151731, intron 17 of 33)	B3A|SINE|B2	-88983.0	NM_022311	21646.0	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	10.87	6.91	5.55	5.4	9.33	7.23	10.56	5.75	6.87
Merged-chr12-33315998-3	chr12	33315486	33316486	+	755.688904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	13471.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	54.92	68.2	75.85	74.89	59.25	69.93	81.33	104.79	71.82
Merged-chr6-24955872-4	chr6	24955238	24956238	+	755.674988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177013, exon 1 of 1)	exon (NM_177013, exon 1 of 1)	387.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	20.02	14.28	15.72	31.04	16.33	31.35	25.35	11.05	11.87
Merged-chr1-54565592-1	chr1	54565092	54566092	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7908.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	4.58	5.07	7.4	27.66	20.06	8.04	12.67	5.75	8.74
Merged-chr11-79202678-1	chr11	79202178	79203178	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40346.0	NM_001042565	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	4.0	0.46	3.7	6.75	1.4	2.41	6.34	1.77	2.5
Merged-chr4-34733626-2	chr4	34733125	34734125	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3419.0	NM_001347062	69329.0	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.57	1.38	5.55	2.02	0.93	8.04	3.17	6.63	5.0
Merged-chr15-89400883-1	chr15	89400383	89401383	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	MTE-int|LTR|ERVL-MaLR	9380.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	15.45	23.04	21.27	14.17	22.86	19.29	13.73	8.4	25.61
Merged-chr14-51165545-3	chr14	51165083	51166083	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3323.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	28.03	31.79	31.45	14.17	20.53	29.74	29.57	21.67	53.71
Merged-chr16-95839267-1	chr16	95838767	95839767	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040485, intron 3 of 3)	intron (NR_040485, intron 3 of 3)	59446.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	10.87	11.52	5.55	29.69	20.53	11.25	16.9	19.01	5.62
Merged-chr11-19968028-3	chr11	19967531	19968531	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	43589.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	7.44	5.99	5.55	4.72	3.73	1.61	3.17	2.65	1.87
Merged-chr3-138530202-1	chr3	138529702	138530702	+	755.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007917, intron 2 of 7)	intron (NM_007917, intron 2 of 7)	2934.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	16.59	6.91	11.1	9.45	4.67	10.45	24.29	20.78	16.86
Merged-chr2-145517570-3	chr2	145517050	145518050	+	755.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 4 of 16)	intron (NM_053195, intron 4 of 16)	37432.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.57	2.3	1.85	4.72	3.27	0.0	1.06	1.33	3.75
Merged-chr13-97235201-2	chr13	97234709	97235709	+	755.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5896.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	4.58	3.69	1.85	2.7	1.87	5.63	7.39	0.0	2.5
Merged-chr13-112366905-2	chr13	112366406	112367406	+	755.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168403, intron 9 of 11)	intron (NM_001168403, intron 9 of 11)	78388.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.15	10.14	11.1	18.22	7.46	6.43	7.39	7.52	10.62
Merged-chr4-132476404-2	chr4	132475907	132476907	+	755.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12486.0	NM_026039	67219.0	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	7.44	6.45	4.62	20.92	14.0	27.33	8.45	8.4	0.0
Merged-chr15-100747169-2	chr15	100746671	100747671	+	755.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-14434.0	NR_045782	619313.0	Mm.123436	NR_045781	ENSMUSG00000116504	I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	14.3	4.61	12.02	8.77	4.2	12.06	12.67	6.19	5.0
Merged-chr5-31093532-3	chr5	31093048	31094048	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011773)	promoter-TSS (NM_011773)	-21.0	NM_011773	22784.0	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	9.72	9.22	0.0	1.35	3.27	4.82	3.17	2.21	1.25
Merged-chr1-56972386-3	chr1	56971889	56972889	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_024325, exon 1 of 1)	non-coding (NR_024325, exon 1 of 1)	920.0	NR_024326	329160.0	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	2.86	5.53	14.8	10.8	4.67	20.9	10.56	5.75	8.74
Merged-chr9-96517621-3	chr9	96517112	96518112	+	755.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38937.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	6.86	7.37	5.55	9.45	7.0	10.45	6.34	15.03	11.24
Merged-chr6-125548630-3	chr6	125548142	125549142	+	755.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4306.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	18.88	8.29	7.4	16.19	17.26	8.04	7.39	6.63	10.62
Merged-chr3-51720388-2	chr3	51719873	51720873	+	755.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	RMER19A|LTR|ERVK	59194.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	36.61	29.95	46.25	24.96	18.19	24.11	15.84	14.59	17.49
Merged-chr13-59821100-3	chr13	59820611	59821611	+	755.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	C-rich|Low_complexity|Low_complexity	2036.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	61.21	79.25	67.52	51.28	46.18	44.21	49.64	90.2	47.46
Merged-chr16-57259954-3	chr16	57259470	57260470	+	755.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28504.0	NM_001358433	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	4.58	7.83	4.62	6.07	2.8	6.43	7.39	4.86	2.5
Merged-chr9-107288904-3	chr9	107288394	107289394	+	755.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	502.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	31.46	21.2	13.87	55.33	43.39	23.31	124.63	105.68	57.46
Merged-chr3-144706608-1	chr3	144706108	144707108	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001282042, exon 4 of 10)	exon (NM_001282042, exon 4 of 10)	13727.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	14.3	17.97	15.72	19.57	20.99	24.11	34.85	26.53	25.61
Merged-chr12-25492966-2	chr12	25492437	25493437	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	363763.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.57	6.45	5.55	4.05	2.33	6.43	1.06	3.1	3.12
Merged-chr8-128235762-2	chr8	128235244	128236244	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42481.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	17.73	11.98	5.55	26.99	23.79	15.27	32.74	21.22	28.1
Merged-chr2-165400406-1	chr2	165399906	165400906	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029021)	promoter-TSS (NM_029021)	-12.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	15.45	11.98	20.35	12.82	7.93	8.84	4.22	6.63	6.25
Merged-chr13-81767181-1	chr13	81766681	81767681	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16066.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	2.29	2.76	0.0	6.75	3.27	2.41	5.28	5.31	3.12
Merged-chr19-21176111-2	chr19	21175618	21176618	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71408.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	26.31	19.81	20.35	19.57	14.93	27.33	16.9	15.48	20.61
Merged-chr16-62832632-3	chr16	62832140	62833140	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026577, intron 1 of 9)	intron (NM_026577, intron 1 of 9)	14400.0	NM_026577	68146.0	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	9.15	5.53	1.85	1.35	2.33	11.25	2.11	0.88	5.0
Merged-chr1-40392741-1	chr1	40392241	40393241	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36829.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.29	0.92	7.4	4.05	3.27	0.0	1.06	3.98	1.25
Merged-chr18-31939323-1	chr18	31938823	31939823	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144862, intron 1 of 9)	CpG	7816.0	NM_144862	225341.0	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.57	0.0	12.02	6.75	0.0	4.02	3.17	0.0	3.75
Merged-chr15-6569934-2	chr15	6569427	6570427	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9920.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	157.89	209.2	155.39	150.46	148.35	176.03	189.06	205.61	141.77
Merged-chr10-105574256-1	chr10	105573756	105574756	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038032)	promoter-TSS (NR_038032)	223.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	5.15	0.46	0.92	3.37	1.87	0.0	2.11	2.65	3.75
Merged-chr18-64956093-1	chr18	64955593	64956593	+	755.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	MTA_Mm|LTR|ERVL-MaLR	-67434.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	6.86	3.69	2.77	6.07	2.33	0.0	27.46	6.63	4.37
Merged-chr19-32960844-2	chr19	32960334	32961334	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196278.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	11.44	23.04	15.72	18.22	12.13	24.92	25.35	12.38	12.49
Merged-chr17-36044971-2	chr17	36044476	36045476	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034909, intron 1 of 2)	MLT1F1|LTR|ERVL-MaLR	2015.0	NM_001034909	547347.0	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	1.72	3.69	2.77	22.94	7.46	10.45	22.18	13.27	11.24
Merged-chr18-82903178-2	chr18	82902674	82903674	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7705.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	28.6	9.22	15.72	26.99	7.46	13.66	19.01	11.5	11.24
Merged-chr4-41390299-1	chr4	41389799	41390799	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001290454)	TTS (NM_001290454)	38336.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	8.01	2.76	4.62	6.07	5.6	8.04	2.11	3.54	2.5
Merged-chr3-96499653-3	chr3	96499112	96500112	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25573.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	52.06	51.61	27.75	33.06	17.26	22.51	88.72	124.25	64.95
Merged-chr18-88866024-1	chr18	88865524	88866524	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28183.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	19.45	20.27	18.5	18.89	17.26	34.56	14.79	11.05	18.74
Merged-chr14-48199215-1	chr14	48198715	48199715	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003630, intron 1 of 2)	B4A|SINE|B4	499.0	NR_003630	624367.0	Mm.445185	NM_001037921	ENSMUSG00000021846	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	8.01	0.92	1.85	6.07	6.06	6.43	8.45	1.33	5.0
Merged-chr5-64600097-3	chr5	64599581	64600581	+	755.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045078, intron 3 of 3)	intron (NR_045078, intron 3 of 3)	10618.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	33.75	27.19	29.6	23.62	24.72	8.04	39.08	44.66	24.36
Merged-chr15-35140002-1	chr15	35139502	35140502	+	755.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	RMER17C-int|LTR|ERVK	15804.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	3.43	8.29	0.0	3.37	4.2	3.22	4.22	7.07	6.25
Merged-chr1-120122368-3	chr1	120121842	120122842	+	755.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172074, intron 1 of 4)	intron (NM_001172074, intron 1 of 4)	1155.0	NM_001172074	73103.0	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	65.21	93.08	67.52	66.12	83.04	98.06	55.98	61.9	43.72
Merged-chr1-191278523-3	chr1	191278028	191279028	+	755.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39590.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	19.45	10.14	5.55	24.29	7.0	4.82	14.79	5.31	5.62
Merged-chr15-78771924-3	chr15	78771426	78772426	+	755.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	1519.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	26.89	23.5	21.27	40.48	26.59	53.05	44.36	34.49	26.23
Merged-chr2-118959855-3	chr2	118959379	118960379	+	755.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33382.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	2.86	1.84	3.7	8.77	3.27	1.61	51.75	36.7	20.61
Merged-chr11-50225858-3	chr11	50225366	50226366	+	755.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145926, intron 1 of 14)	CpG	531.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	143.59	119.34	112.84	144.39	125.96	155.93	127.8	76.49	86.18
Merged-chr10-57747229-2	chr10	57746729	57747729	+	755.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-37694.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	57.21	60.82	31.45	78.94	64.84	57.07	34.85	34.93	23.11
Merged-chr2-83625812-3	chr2	83625323	83626323	+	755.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18755.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	4.58	5.53	1.85	1.35	6.53	1.61	4.22	3.54	1.87
Merged-chr14-102898624-3	chr14	102898138	102899138	+	755.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83994.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	5.72	17.05	9.25	6.07	8.86	6.43	19.01	11.05	6.25
Merged-chr19-41475002-3	chr19	41474504	41475504	+	755.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-50248.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	28.03	29.49	22.2	29.01	22.86	24.92	16.9	29.18	7.49
Merged-chr2-59228773-3	chr2	59228316	59229316	+	755.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	MTC|LTR|ERVL-MaLR	67966.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	44.05	61.75	42.55	48.58	39.65	36.97	70.76	65.0	26.85
Merged-chr11-109394963-2	chr11	109394462	109395462	+	755.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 3 of 3)	intron (NM_010303, intron 3 of 3)	-30984.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	14.3	21.66	18.5	39.81	51.78	32.15	25.35	16.8	15.61
Merged-chr4-128787549-3	chr4	128787055	128788055	+	755.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 4 of 8)	L1ME4c|LINE|L1	18557.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	14.87	22.12	7.4	14.17	10.73	6.43	30.63	20.34	18.74
Merged-chr1-50962489-1	chr1	50961989	50962989	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	34966.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	4.58	5.53	3.7	8.1	5.13	3.22	5.28	10.61	1.87
Merged-chr18-67212886-1	chr18	67212386	67213386	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 7 of 11)	intron (NM_177137, intron 7 of 11)	7527.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	6.86	3.23	9.25	21.59	16.79	9.65	7.39	2.65	5.0
Merged-chr12-85350001-1	chr12	85349501	85350501	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 3 of 4)	intron (NM_026775, intron 3 of 4)	-10639.0	NM_145138	217718.0	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	62.93	79.25	56.42	66.8	45.72	64.3	59.15	65.88	66.2
Merged-chr13-101843796-1	chr13	101843296	101844296	+	755.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-75579.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	43.48	41.01	18.5	47.23	49.92	59.48	61.26	71.63	46.22
Merged-chr4-62308585-3	chr4	62308078	62309078	+	755.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 21 of 27)	B4A|SINE|B4	17031.0	NM_001290518	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	9.72	12.9	6.47	11.47	6.06	16.08	15.84	4.86	13.12
Merged-chr2-121955309-3	chr2	121954773	121955773	+	755.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290992)	promoter-TSS (NM_001290992)	-728.0	NM_001290992	329506.0	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e|SCP4	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	21.74	22.58	9.25	26.99	31.26	24.92	32.74	37.14	17.49
Merged-chr15-86446290-2	chr15	86445795	86446795	+	755.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 8 of 9)	MTC|LTR|ERVL-MaLR	168620.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	10.3	13.36	16.65	10.12	7.0	14.47	7.39	9.73	6.87
Merged-chr12-75658691-2	chr12	75658204	75659204	+	755.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	MTC|LTR|ERVL-MaLR	10833.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	12.01	8.75	20.35	10.12	8.86	20.09	4.22	11.05	5.0
Merged-chr2-11740671-1	chr2	11740171	11741171	+	755.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34959.0	NM_001271500	16169.0	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	36.04	32.72	38.85	29.01	23.33	56.27	34.85	41.12	23.11
Merged-chr8-45330449-3	chr8	45329955	45330955	+	755.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133969, intron 1 of 10)	intron (NM_133969, intron 1 of 10)	2741.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	12.01	16.13	1.85	8.77	6.53	11.25	21.12	9.29	8.12
Merged-chr9-14698056-3	chr9	14697546	14698546	+	755.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	35024.0	NR_152172	665374.0	Mm.387249	NR_152172	ENSMUSG00000111085	Gm7607	EG665374	predicted gene 7607	ncRNA	4.58	4.61	1.85	4.05	0.47	0.0	3.17	2.65	3.75
Merged-chr15-66768802-2	chr15	66768285	66769285	+	755.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 40 of 47)	intron (NM_009375, intron 40 of 47)	63044.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	6.29	3.23	3.7	6.07	4.67	12.06	8.45	3.98	3.12
Merged-chr17-45630154-2	chr17	45629719	45630719	+	755.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013767)	TTS (NM_001013767)	-28117.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	20.02	11.06	18.5	20.24	8.4	6.43	13.73	7.52	5.0
Merged-chr12-103338397-3	chr12	103337938	103338938	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	17563.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	112.69	103.22	123.94	103.91	69.98	59.48	142.59	149.01	58.08
Merged-chr10-20534063-3	chr10	20533560	20534560	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	UCON26|Unknown|Unknown	14268.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	18.31	18.43	9.25	46.56	20.53	33.76	16.9	19.46	14.99
Merged-chr11-69849410-3	chr11	69848925	69849925	+	755.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168497, intron 6 of 7)	intron (NM_001168497, intron 6 of 7)	2781.0	NR_033133	70310.0	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	19.45	33.64	57.35	76.92	87.7	103.69	30.63	49.08	34.35
Merged-chr12-82265778-4	chr12	82265236	82266236	+	755.09375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 2 of 23)	intron (NM_001167983, intron 2 of 23)	-45613.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	17.16	13.36	18.5	26.31	28.92	31.35	34.85	30.51	35.6
Merged-chr12-87386016-2	chr12	87385525	87386525	+	755.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	2330.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	9.72	14.75	7.4	9.45	7.93	16.08	12.67	10.17	11.24
Merged-chr7-68667865-2	chr7	68667355	68668355	+	755.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49399.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	7.44	9.22	9.25	10.12	8.4	12.86	5.28	4.42	2.5
Merged-chr5-139389813-3	chr5	139389269	139390269	+	755.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001038703)	promoter-TSS (NM_001038703)	-135.0	NM_001038703	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	40.04	34.56	40.7	47.9	54.58	64.3	42.25	41.12	29.35
Merged-chr2-112267028-3	chr2	112266493	112267493	+	755.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133649, exon 1 of 25)	exon (NM_133649, exon 1 of 25)	679.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	114.41	141.0	71.22	93.79	114.76	73.14	183.78	209.15	90.56
Merged-chr10-42144954-2	chr10	42144442	42145442	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126560.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	1.14	2.3	3.7	4.05	4.2	1.61	2.11	1.33	1.25
Merged-chr5-67259984-1	chr5	67259484	67260484	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028975)	promoter-TSS (NM_028975)	-581.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	58.92	103.22	53.65	63.42	95.63	57.87	65.48	109.22	48.71
Merged-chr11-43529330-3	chr11	43528784	43529784	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 1 of 5)	CpG	535.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	2.86	2.76	5.55	4.05	1.87	0.0	3.17	0.88	3.75
Merged-chr6-149307941-1	chr6	149307441	149308441	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-1473.0	NM_001289661	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	11.44	10.6	7.4	7.42	9.33	16.08	24.29	15.03	5.62
Merged-chr3-119745950-1	chr3	119745450	119746450	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310711, intron 7 of 13)	intron (NM_001310711, intron 7 of 13)	37438.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	14.87	10.6	11.1	10.12	6.06	5.63	12.67	5.75	14.99
Merged-chr1-6976410-1	chr1	6975910	6976910	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB1|LINE|L1	-112510.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	9.72	11.98	15.72	7.42	10.73	19.29	14.79	4.42	8.74
Merged-chr14-103469296-2	chr14	103468801	103469801	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44040.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	139.58	108.28	35.15	135.62	66.24	43.4	97.17	61.46	32.48
Merged-chr3-152104619-2	chr3	152104127	152105127	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 4 of 5)	ID4_|SINE|ID	61273.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	5.72	5.53	5.55	4.05	5.6	4.82	4.22	2.21	0.0
Merged-chr9-14717945-1	chr9	14717445	14718445	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177905, intron 10 of 18)	intron (NM_177905, intron 10 of 18)	22788.0	NM_177905	330890.0	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	8.01	19.81	8.32	6.07	6.06	12.86	9.51	8.84	8.74
Merged-chr16-4667373-1	chr16	4666873	4667873	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 6 of 27)	intron (NM_030205, intron 6 of 27)	12347.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	4.58	4.15	3.7	6.07	5.13	6.43	7.39	1.77	11.87
Merged-chr8-108699232-1	chr8	108698732	108699732	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15412.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	8.58	4.61	11.1	14.84	8.86	9.65	20.07	4.42	2.5
Merged-chr5-92466110-2	chr5	92465602	92466602	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	7545.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	133.29	124.41	100.82	140.34	146.48	119.76	153.15	197.21	90.56
Merged-chr5-135976063-1	chr5	135975563	135976563	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1587.0	NM_001160366	109267.0	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	2.86	2.3	7.4	3.37	1.87	0.0	5.28	7.07	5.0
Merged-chr8-117370578-1	chr8	117370078	117371078	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	21408.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	12.59	9.68	20.35	15.52	15.39	23.31	12.67	7.96	19.36
Merged-chr9-86449835-1	chr9	86449335	86450335	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027394, intron 2 of 9)	intron (NM_027394, intron 2 of 9)	15081.0	NM_027394	70348.0	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	4.0	1.84	0.0	6.75	5.13	6.43	2.11	0.0	0.0
Merged-chr9-60837524-3	chr9	60837011	60838011	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	43069.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	26.89	19.81	9.25	80.29	41.05	30.54	14.79	19.9	18.11
Merged-chr10-41870308-1	chr10	41869808	41870808	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-17131.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	8.01	6.45	3.7	8.77	5.6	6.43	11.62	2.65	6.25
Merged-chr5-72820277-1	chr5	72819777	72820777	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	48171.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	36.61	49.3	27.75	56.68	51.32	57.87	30.63	21.22	36.22
Merged-chr1-195038149-1	chr1	195037649	195038649	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015566)	TTS (NR_015566)	602.0	NR_029745	387224.0		NR_029745	ENSMUSG00000065548	Mir29c	Mirn29c|mir-29c|mmu-mir-29c	microRNA 29c	ncRNA	10.87	8.29	7.4	17.54	12.13	22.51	10.56	8.4	13.74
Merged-chr4-8863944-1	chr4	8863444	8864444	+	755.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277149, exon 36 of 38)	exon (NM_001277149, exon 36 of 38)	112620.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.0	7.37	18.5	4.05	6.06	12.86	21.12	11.5	11.24
Merged-chr4-141742107-1	chr4	141741607	141742607	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4568.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	6.29	1.38	7.4	12.82	11.2	16.08	2.11	4.42	2.5
Merged-chr3-96661668-3	chr3	96661163	96662163	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302471, intron 27 of 29)	RLTR12F|LTR|ERVK	-8468.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	16.02	14.28	32.37	25.64	15.39	13.66	7.39	11.5	16.24
Merged-chr6-28723197-1	chr6	28722697	28723697	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 13 of 23)	intron (NM_019776, intron 13 of 23)	108550.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	5.15	3.69	9.25	2.7	3.27	3.22	3.17	2.21	8.74
Merged-chr1-162040761-1	chr1	162040261	162041261	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172646, intron 16 of 19)	L1MC4|LINE|L1	35792.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	5.15	3.69	3.7	4.72	1.4	4.82	8.45	5.75	2.5
Merged-chr12-21523184-1	chr12	21522684	21523684	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-105748.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	4.58	5.53	5.55	1.35	0.93	3.22	3.17	0.88	2.5
Merged-chr11-61638951-3	chr11	61638428	61639428	+	755.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER76|LTR|ERVL	-14393.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	18.31	9.68	0.0	20.92	14.93	6.43	10.56	6.19	9.99
Merged-chr18-21653296-1	chr18	21652796	21653796	+	755.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081403)	promoter-TSS (NM_001081403)	-928.0	NM_001081403	225266.0	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	1.72	0.92	2.77	2.7	0.93	3.22	0.0	0.44	1.87
Merged-chr5-63821364-2	chr5	63820865	63821865	+	754.983337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	8870.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	5.72	7.83	7.4	4.05	12.13	1.61	9.51	9.73	3.12
Merged-chr2-124618426-5	chr2	124618255	124619255	+	754.9533690000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	8459.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	69.79	47.46	42.55	58.03	43.85	52.25	46.47	43.77	37.47
Merged-chr15-58272623-3	chr15	58272101	58273101	+	754.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51568.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	12.59	8.75	11.1	13.49	9.8	20.9	27.46	10.61	18.11
Merged-chr7-19818596-3	chr7	19818083	19819083	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	4172.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	26.89	19.35	10.17	24.29	19.59	9.65	40.14	28.74	18.74
Merged-chr8-126876636-3	chr8	126876106	126877106	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27586.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	9.72	15.21	7.4	18.22	14.93	6.43	13.73	9.29	13.74
Merged-chr5-112297482-3	chr5	112296982	112297982	+	754.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001326590, intron 1 of 5)	intron (NM_001326590, intron 1 of 5)	20791.0	NM_009419	22022.0	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	26.89	23.96	38.85	60.05	58.31	51.44	67.6	45.1	28.1
Merged-chr2-165333372-3	chr2	165332869	165333869	+	754.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-6890.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	75.51	61.75	94.35	63.42	48.52	103.69	67.6	59.25	75.57
Merged-chrX-99487525-3	chrX	99487051	99488051	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16816.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	11.44	10.14	18.5	12.82	5.6	1.61	7.39	7.52	6.25
Merged-chr2-84794148-3	chr2	84793652	84794652	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-4676.0	NM_019949	56791.0	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	9.72	8.75	9.25	11.47	6.53	2.41	19.01	14.15	9.99
Merged-chr7-19701196-3	chr7	19700701	19701701	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_016871)	TTS (NM_016871)	-2013.0	NM_009696	11816.0	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	31.46	29.03	17.57	26.31	27.99	36.17	41.19	17.69	22.48
Merged-chr10-115314476-3	chr10	115313928	115314928	+	754.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024454, intron 1 of 6)	intron (NM_024454, intron 1 of 6)	1163.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	202.51	284.3	112.84	213.21	229.52	162.37	231.3	249.38	113.04
Merged-chrX-152178993-3	chrX	152178515	152179515	+	754.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005475)	promoter-TSS (NM_001005475)	6.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	23.45	24.88	23.12	16.87	14.46	23.31	27.46	31.84	22.48
Merged-chr13-3825909-3	chr13	3825406	3826406	+	754.8388669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11851.0	NM_020036	80796.0	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	9.15	8.75	7.4	10.12	7.93	14.47	7.39	1.33	3.12
Merged-chr14-31399458-2	chr14	31398942	31399942	+	754.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	18235.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	28.03	30.41	24.05	39.13	28.46	36.97	48.58	34.93	25.61
Merged-chr15-25406204-2	chr15	25405694	25406694	+	754.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	7570.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	13.16	17.05	12.95	19.57	16.33	16.08	13.73	16.36	14.36
Merged-chr12-78915994-1	chr12	78915494	78916494	+	754.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9056.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	1.14	3.23	3.7	15.52	8.4	10.45	1.06	0.0	6.25
Merged-chr16-30975391-3	chr16	30974887	30975887	+	754.788879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106045.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	99.54	124.87	87.87	92.44	118.03	108.51	76.05	84.45	58.71
Merged-chr3-133582170-3	chr3	133581694	133582694	+	754.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37804.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	34.32	19.35	8.32	27.66	16.33	11.25	25.35	20.78	13.74
Merged-chr5-34232028-3	chr5	34231530	34232530	+	754.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-44320.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	12.01	8.29	24.05	16.19	17.73	13.66	7.39	3.54	6.25
Merged-chr5-114769732-1	chr5	114769232	114770232	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019834, exon 2 of 19)	exon (NM_019834, exon 2 of 19)	3759.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	16.59	11.98	9.25	23.62	8.86	16.08	7.39	5.75	9.99
Merged-chr8-83535953-2	chr8	83535471	83536471	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5122.0	NM_146270	258267.0	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	2.29	8.29	9.25	3.37	3.73	1.61	3.17	4.42	3.75
Merged-chr12-70707577-1	chr12	70707077	70708077	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117937.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	16.02	14.75	11.1	21.59	13.53	3.22	3.17	5.75	8.74
Merged-chr8-11411925-1	chr8	11411425	11412425	+	754.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 16 of 47)	intron (NM_009932, intron 16 of 47)	-66004.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	1.72	1.38	0.0	8.77	4.2	8.04	8.45	3.1	2.5
Merged-chr16-33546546-3	chr16	33546057	33547057	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 3 of 11)	intron (NM_001083902, intron 3 of 11)	27962.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	2.86	1.38	2.77	9.45	4.67	8.04	4.22	3.1	1.25
Merged-chr4-155694269-2	chr4	155693761	155694761	+	754.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178699)	promoter-TSS (NM_178699)	-81.0	NM_178699	230991.0	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	45.76	22.58	29.6	49.93	38.72	47.42	39.08	25.65	6.25
Merged-chr3-149098946-2	chr3	149098469	149099469	+	754.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144334.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	11.44	5.07	6.47	5.4	2.33	1.61	5.28	1.77	11.24
Merged-chr4-63307546-3	chr4	63307062	63308062	+	754.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 36 of 60)	intron (NM_025685, intron 36 of 60)	-36994.0	NM_008768	18405.0	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	1.14	2.3	0.0	0.67	1.4	0.0	3.17	0.88	1.25
Merged-chrX-168455503-3	chrX	168454977	168455977	+	754.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033330, intron 2 of 19)	(TG)n|Simple_repeat|Simple_repeat	121754.0	NM_001033330	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	6.86	7.37	9.25	6.07	4.2	13.66	2.11	5.75	9.99
Merged-chr12-40548032-3	chr12	40547533	40548533	+	754.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	101980.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	34.9	52.53	31.45	45.21	30.79	33.76	38.02	35.82	36.22
Merged-chr12-12222189-1	chr12	12221689	12222689	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39950.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	6.86	8.75	9.25	12.14	3.73	3.22	9.51	3.1	16.86
Merged-chr5-120579447-1	chr5	120578947	120579947	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9166.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	13.73	8.75	3.7	14.84	9.33	8.04	9.51	2.65	7.49
Merged-chr11-85844726-1	chr11	85844226	85845226	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12111.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	10.87	4.15	12.95	11.47	7.0	5.63	6.34	1.33	2.5
Merged-chr2-30636490-2	chr2	30636022	30637022	+	754.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41478.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	26.31	21.66	36.07	29.01	20.06	37.78	24.29	40.24	9.99
Merged-chr9-58581585-2	chr9	58581122	58582122	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009145)	promoter-TSS (NM_009145)	-618.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	83.52	110.59	72.15	108.63	114.76	113.33	116.18	124.69	81.81
Merged-chr14-66847746-2	chr14	66847239	66848239	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009955, intron 3 of 13)	intron (NM_009955, intron 3 of 13)	20861.0	NM_009955	12934.0	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	16.59	24.42	10.17	41.16	20.99	9.65	20.07	17.69	34.97
Merged-chr9-116183555-2	chr9	116183066	116184066	+	754.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5614.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	88.1	93.08	80.47	120.77	62.98	70.73	62.31	50.85	36.22
Merged-chr14-57372570-2	chr14	57372061	57373061	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	25922.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	4.0	3.23	0.0	2.02	1.87	0.0	1.06	0.88	3.75
Merged-chr14-63439260-2	chr14	63438803	63439803	+	754.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177628, intron 1 of 3)	intron (NM_177628, intron 1 of 3)	2909.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	86.38	117.5	51.8	77.59	60.65	71.54	84.49	92.41	52.46
Merged-chr4-40777682-2	chr4	40777180	40778180	+	754.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19795.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	16.02	14.75	30.52	26.99	9.8	25.72	34.85	24.32	14.36
Merged-chr5-103763153-3	chr5	103762653	103763653	+	754.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	8580.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	40.04	39.63	47.17	18.22	21.93	28.94	34.85	20.78	34.35
Merged-chr8-106611296-3	chr8	106610782	106611782	+	754.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	7932.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	12.01	15.21	24.05	10.8	17.73	16.08	8.45	9.29	12.49
Merged-chr10-13969169-3	chr10	13968652	13969652	+	754.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	2773.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	21.17	6.45	1.85	11.47	8.4	15.27	17.96	13.27	6.25
Merged-chr3-15203004-2	chr3	15202498	15203498	+	754.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129304.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	2.86	3.69	5.55	6.75	0.47	0.0	1.06	4.42	3.75
Merged-chr19-46837462-2	chr19	46836967	46837967	+	754.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102471, intron 1 of 6)	intron (NM_001102471, intron 1 of 6)	75858.0	NM_001102471	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	9.72	3.23	3.7	13.49	7.46	3.22	9.51	4.86	3.12
Merged-chr16-64907654-3	chr16	64907082	64908082	+	754.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55581.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	15.45	5.53	7.4	6.07	6.53	5.63	10.56	6.63	3.75
Merged-chr10-127665330-3	chr10	127664836	127665836	+	754.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008668, intron 1 of 6)	intron (NM_008668, intron 1 of 6)	1367.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	32.04	24.42	28.67	20.24	10.73	23.31	29.57	43.33	29.35
Merged-chr10-42003775-2	chr10	42003261	42004261	+	754.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	14621.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	6.29	3.23	1.85	7.42	2.8	1.61	4.22	2.65	3.75
Merged-chr19-24979228-3	chr19	24978730	24979730	+	754.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17614.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	16.59	14.28	14.8	19.57	14.93	20.9	22.18	24.32	23.73
Merged-chr10-3972399-1	chr10	3971899	3972899	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172308)	promoter-TSS (NM_172308)	-676.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	6.29	11.06	10.17	4.05	8.86	10.45	11.62	4.86	5.0
Merged-chr17-62687598-1	chr17	62687098	62688098	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010109, intron 1 of 3)	intron (NM_010109, intron 1 of 3)	193719.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	2.86	2.76	5.55	2.02	1.87	4.82	3.17	1.33	3.75
Merged-chr1-186834170-1	chr1	186833670	186834670	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-84812.0	NM_026041	67223.0	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	5.15	5.53	7.4	1.35	0.93	1.61	6.34	1.33	5.62
Merged-chr1-132311640-3	chr1	132311146	132312146	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4479.0	NM_001195025	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	23.45	17.51	24.97	23.62	20.99	24.92	21.12	7.96	22.48
Merged-chr11-94732918-1	chr11	94732418	94733418	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	28264.0	NM_001105561	217122.0	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086	predicted gene 11545	protein-coding	52.06	47.0	22.2	4.05	2.33	3.22	2.11	3.54	8.74
Merged-chr3-115644505-1	chr3	115644005	115645005	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70550.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.86	5.99	0.0	14.84	6.53	3.22	8.45	4.86	6.25
Merged-chr4-105254501-3	chr4	105253979	105254979	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97132.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	76.66	55.75	60.12	65.45	44.78	48.23	77.1	83.57	40.59
Merged-chr12-56428383-2	chr12	56427888	56428888	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82494.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.0	5.53	1.85	6.75	6.53	4.02	5.28	9.73	5.0
Merged-chr3-135211069-2	chr3	135210574	135211574	+	754.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-1489.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	7.44	7.37	5.55	10.8	4.67	4.82	5.28	5.75	10.62
Merged-chr8-70702678-5	chr8	70702096	70703096	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	4857.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	19.45	9.22	22.2	12.14	5.13	8.84	7.39	8.4	8.74
Merged-chr14-61331400-3	chr14	61330880	61331880	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21627.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	4.0	2.3	0.0	4.05	0.93	2.41	3.17	0.0	1.87
Merged-chr5-150519746-2	chr5	150519247	150520247	+	754.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1588.0	NM_001159693	545824.0	Mm.380068	NM_001159693	ENSMUSG00000056586	Zar1l	XM_359419	zygote arrest 1-like	protein-coding	5.72	5.99	3.7	0.67	3.73	8.84	1.06	0.88	3.75
Merged-chr14-9468863-3	chr14	9468357	9469357	+	754.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-415238.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	11.44	13.36	15.72	16.87	11.2	15.27	22.18	8.84	23.73
Merged-chr18-35156906-3	chr18	35156417	35157417	+	754.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009818, intron 3 of 17)	MTE2b|LTR|ERVL-MaLR	38005.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	14.3	10.6	11.1	6.07	13.53	14.47	21.12	10.17	11.87
Merged-chr9-62367844-2	chr9	62367334	62368334	+	754.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	26491.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	50.91	36.4	29.6	20.92	14.0	15.27	24.29	11.05	9.99
Merged-chr15-51803477-3	chr15	51802990	51803990	+	754.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	61971.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	9.72	14.75	16.65	4.72	7.0	10.45	4.22	8.4	9.99
Merged-chr13-34256820-2	chr13	34256307	34257307	+	754.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	L1MB1|LINE|L1	88375.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	53.77	64.51	22.2	60.05	52.25	29.74	41.19	61.46	34.97
Merged-chr7-13009216-3	chr7	13008715	13009715	+	754.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024699, intron 1 of 2)	intron (NM_001024699, intron 1 of 2)	637.0	NM_001024699	232879.0	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	33.18	16.59	37.92	22.94	17.73	44.21	33.8	21.22	22.48
Merged-chrX-157612970-3	chrX	157612439	157613439	+	754.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14224.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	2.29	1.84	1.85	15.52	17.73	12.86	5.28	2.21	1.25
Merged-chr11-82048219-3	chr11	82047729	82048729	+	754.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013654)	TTS (NM_013654)	2517.0	NM_013654	20306.0	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	8.58	4.61	7.4	14.17	2.8	7.23	9.51	7.96	12.49
Merged-chr15-86051255-2	chr15	86050755	86051755	+	754.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6440.0	NM_172611	223752.0	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	9.72	2.3	9.25	4.05	2.8	4.82	5.28	0.88	1.25
Merged-chr3-115644118-2	chr3	115643621	115644621	+	754.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70934.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	8.58	7.83	0.0	16.19	7.0	3.22	15.84	12.38	3.75
Merged-chr10-42171201-1	chr10	42170701	42171701	+	754.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	105541.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	5.72	1.84	8.32	4.05	4.67	1.61	3.17	4.42	7.49
Merged-chr2-11535002-2	chr2	11534461	11535461	+	754.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	18968.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	85.24	63.59	35.15	134.94	135.75	122.18	145.75	133.09	58.71
Merged-chr17-21733778-4	chr17	21733262	21734262	+	754.287476	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164676)	promoter-TSS (NM_001164676)	38.0	NM_001164676	381067.0	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	32.04	37.78	40.7	35.09	32.19	45.01	32.74	35.82	18.74
Merged-chr11-93988728-2	chr11	93988231	93989231	+	754.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7360.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	201.36	162.2	84.17	74.22	69.51	61.09	71.82	71.19	24.36
Merged-chr18-69666914-2	chr18	69666394	69667394	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258665.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	49.2	68.2	44.4	74.89	69.98	57.87	67.6	75.17	63.7
Merged-chr17-17909594-2	chr17	17909098	17910098	+	754.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21774.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	62.93	78.79	79.55	60.05	49.92	73.95	162.65	150.34	103.05
Merged-chr7-46987083-1	chr7	46986583	46987583	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033461, intron 4 of 4)	intron (NR_033461, intron 4 of 4)	10451.0	NR_033461	629141.0	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	-	predicted gene 9999	ncRNA	24.03	38.71	45.32	47.9	35.45	54.66	120.41	114.52	38.72
Merged-chr13-44926501-2	chr13	44926002	44927002	+	754.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 8 of 9)	Lx7|LINE|L1	75594.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	6.29	10.14	11.1	10.12	4.67	12.06	8.45	5.75	8.74
Merged-chr7-83802144-3	chr7	83801648	83802648	+	754.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7309.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	37.18	31.79	29.6	46.56	19.59	24.92	24.29	34.93	28.1
Merged-chr10-98515010-3	chr10	98514501	98515501	+	754.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-163134.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	18.31	19.35	11.1	8.1	16.79	4.82	22.18	11.05	9.37
Merged-chr8-77535203-2	chr8	77534678	77535678	+	754.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14219.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	7.44	3.69	0.0	2.02	3.73	8.04	2.11	3.98	0.0
Merged-chrX-12936994-1	chrX	12936494	12937494	+	754.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001272033, exon 1 of 1)	exon (NM_001272033, exon 1 of 1)	121.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	5.72	2.76	5.55	10.8	4.67	4.82	8.45	2.65	1.25
Merged-chr2-32083352-2	chr2	32082848	32083848	+	754.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151493, exon 2 of 6)	non-coding (NR_151493, exon 2 of 6)	357.0	NM_175511	241303.0	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	113.84	93.54	98.97	87.04	83.51	97.26	142.59	161.39	59.33
Merged-chr12-32207055-3	chr12	32206557	32207557	+	754.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146200, intron 1 of 10)	intron (NM_001146200, intron 1 of 10)	1281.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	16.59	20.27	10.17	23.62	16.33	39.39	12.67	13.71	12.49
Merged-chr7-127274541-2	chr7	127274023	127275023	+	754.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009266)	promoter-TSS (NM_009266)	-464.0	NM_009266	20768.0	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	97.82	87.09	63.82	118.75	93.3	57.87	108.79	95.07	22.48
Merged-chr11-115132049-2	chr11	115131536	115132536	+	754.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169153, intron 1 of 6)	L2|LINE|L2	1956.0	NM_001347648	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	22.31	21.66	35.15	30.36	14.93	16.88	74.99	72.07	14.36
Merged-chr19-56726613-2	chr19	56726126	56727126	+	754.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4254.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	111.55	111.51	98.05	99.86	91.44	94.85	127.8	153.87	83.06
Merged-chr1-128608306-2	chr1	128607806	128608806	+	754.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16007.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.15	5.53	6.47	4.72	5.6	6.43	6.34	3.1	1.25
Merged-chr5-130159900-3	chr5	130159427	130160427	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11892.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	8.58	7.83	14.8	12.14	11.2	4.82	12.67	9.29	9.37
Merged-chr10-24312387-3	chr10	24311897	24312897	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88880.0	NM_021509	59012.0	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	6.29	1.38	0.0	9.45	2.33	5.63	4.22	0.44	1.25
Merged-chr15-80076953-3	chr15	80076465	80077465	+	754.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013762)	TTS (NM_013762)	1614.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	24.03	25.8	30.52	34.41	14.0	56.27	22.18	17.24	26.23
Merged-chr16-36588173-2	chr16	36587678	36588678	+	754.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26044.0	NM_013803	12374.0	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	7.44	3.23	8.32	4.72	5.6	1.61	3.17	2.21	6.87
Merged-chr4-141652499-2	chr4	141652008	141653008	+	754.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	11607.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	64.64	58.98	33.3	55.33	46.18	43.4	65.48	46.87	29.98
Merged-chr16-20619999-3	chr16	20619511	20620511	+	754.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028420, exon 2 of 2)	3' UTR (NM_028420, exon 2 of 2)	1267.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	4.58	0.46	1.85	2.7	0.93	3.22	2.11	3.1	4.37
Merged-chr15-63614280-2	chr15	63613808	63614808	+	754.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-134700.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	33.75	58.52	54.57	33.74	46.18	58.68	55.98	68.09	31.85
Merged-chr15-25485600-2	chr15	25485086	25486086	+	754.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71394.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	3.43	3.69	2.77	4.05	2.33	0.0	14.79	6.19	3.12
Merged-chr9-40757405-3	chr9	40756903	40757903	+	754.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-43870.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	29.17	35.02	18.5	34.41	28.92	36.97	43.3	37.14	31.85
Merged-chr5-135494432-3	chr5	135493934	135494934	+	754.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	50688.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	5.72	2.3	1.85	3.37	5.6	3.22	5.28	0.44	1.87
Merged-chr11-21236577-3	chr11	21236071	21237071	+	754.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12D|LTR|ERVK	-2461.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	13.16	22.58	23.12	13.49	18.19	22.51	24.29	29.18	28.73
Merged-chr5-98030648-3	chr5	98030143	98031143	+	754.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_133738, exon 1 of 17)	5' UTR (NM_133738, exon 1 of 17)	319.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	18.31	12.9	1.85	39.81	30.32	20.09	12.67	5.31	8.74
Merged-chr7-61958403-1	chr7	61957903	61958903	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015599, intron 3 of 3)	RMER15-int|LTR|ERVL	-18297.0	NR_030557	100124439.0		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	5.72	5.07	3.7	3.37	6.53	4.82	3.17	3.54	7.49
Merged-chr4-132573965-2	chr4	132573451	132574451	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	9884.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	149.31	76.49	38.85	237.5	153.95	107.71	171.1	175.1	39.97
Merged-chr8-56313130-1	chr8	56312630	56313630	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008278, intron 4 of 6)	intron (NM_008278, intron 4 of 6)	18578.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	55.49	85.71	53.65	50.6	47.58	59.48	51.75	57.04	63.7
Merged-chr2-35755959-2	chr2	35755465	35756465	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029774, intron 9 of 9)	intron (NM_029774, intron 9 of 9)	59233.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	14.87	5.07	3.7	10.8	2.33	6.43	7.39	4.86	2.5
Merged-chr4-141274785-2	chr4	141274286	141275286	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3653.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	15.45	16.59	4.62	22.94	16.79	41.8	20.07	12.38	13.74
Merged-chr4-128617902-3	chr4	128617447	128618447	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205823, exon 1 of 1)	exon (NM_205823, exon 1 of 1)	672.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	129.86	188.46	114.69	94.46	84.44	90.02	122.52	148.13	81.19
Merged-chr10-22307545-1	chr10	22307045	22308045	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	825.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	239.12	182.01	107.29	217.93	124.56	118.16	50.7	35.37	21.86
Merged-chr6-90710738-2	chr6	90710184	90711184	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	5845.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	10.87	9.22	7.4	12.14	6.06	11.25	6.34	2.65	12.49
Merged-chr10-86827150-3	chr10	86826656	86827656	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 12 of 13)	MIRb|SINE|MIR	48151.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	5.72	2.76	7.4	6.07	4.67	14.47	3.17	2.65	7.49
Merged-chr2-73561811-3	chr2	73561312	73562312	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18526.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	10.87	1.38	3.7	2.7	2.33	4.82	8.45	3.1	2.5
Merged-chr1-134850551-1	chr1	134850051	134851051	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081307, intron 13 of 23)	intron (NM_001081307, intron 13 of 23)	-46830.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	9.15	7.37	4.62	1.35	4.67	1.61	1.06	1.33	6.25
Merged-chr8-54671997-1	chr8	54671497	54672497	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172152, intron 9 of 29)	intron (NM_001172152, intron 9 of 29)	46681.0	NM_028220	244484.0	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0.57	7.83	3.7	0.67	3.27	0.0	3.17	3.54	0.0
Merged-chr7-126676405-1	chr7	126675905	126676905	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133670)	promoter-TSS (NM_133670)	13.0	NM_133670	20887.0	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|ST1A4|Stp|Stp1|mSTp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	32.04	24.88	29.6	31.71	30.79	40.19	39.08	30.95	36.85
Merged-chr5-134551863-1	chr5	134551363	134552363	+	754.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	571.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	84.66	72.8	81.4	62.07	78.37	73.14	89.78	101.7	56.21
Merged-chr3-138893708-1	chr3	138893208	138894208	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121195, intron 3 of 7)	intron (NR_121195, intron 3 of 7)	151500.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.0	4.15	11.1	6.07	5.13	3.22	3.17	2.21	0.62
Merged-chr1-80670621-2	chr1	80670151	80671151	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	MTE2a|LTR|ERVL-MaLR	-5299.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	23.45	36.86	40.7	22.94	26.12	21.7	35.91	34.05	14.99
Merged-chr17-10039026-1	chr17	10038526	10039526	+	754.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-263160.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	2.29	5.99	6.47	8.1	2.8	4.82	15.84	3.98	11.87
Merged-chr13-56163057-3	chr13	56162553	56163553	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15832.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	9.72	3.69	2.77	6.75	1.87	5.63	3.17	7.07	7.49
Merged-chr17-84978661-1	chr17	84978161	84979161	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159498, intron 2 of 7)	intron (NM_001159498, intron 2 of 7)	13636.0	NM_001159498	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	8.58	7.37	0.0	6.07	4.2	4.82	5.28	2.21	3.75
Merged-chr17-3010344-1	chr17	3009844	3010844	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73839.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	1.72	1.38	4.62	1.35	2.8	0.0	0.0	1.77	3.75
Merged-chr17-22352996-1	chr17	22352496	22353496	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355280, intron 4 of 6)	intron (NM_001355280, intron 4 of 6)	8404.0	NM_176962	319615.0	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	4.58	3.23	6.47	0.0	2.33	4.82	3.17	1.77	3.75
Merged-chr11-70214485-1	chr11	70213985	70214985	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153081, intron 1 of 4)	CpG	575.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	5.72	0.46	1.85	3.37	3.27	4.82	2.11	0.0	1.25
Merged-chr4-154170468-1	chr4	154169968	154170968	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001162977)	promoter-TSS (NM_001162977)	-245.0	NM_001162977	230971.0	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	5.15	7.37	1.85	4.05	1.4	1.61	3.17	0.0	13.12
Merged-chr5-90596376-1	chr5	90595876	90596876	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 13 of 13)	intron (NM_001252661, intron 13 of 13)	35167.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	3.43	2.76	3.7	4.05	3.73	4.02	4.22	1.33	0.62
Merged-chr8-34895313-1	chr8	34894813	34895813	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	B1F2|SINE|Alu	70377.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.72	2.3	12.95	6.07	6.53	1.61	11.62	5.75	0.62
Merged-chr16-96292063-1	chr16	96291563	96292563	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033149, intron 1 of 2)	intron (NM_033149, intron 1 of 2)	11031.0	NM_033149	93961.0	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.57	2.76	3.7	3.37	3.73	4.02	3.17	3.54	2.5
Merged-chr2-47088902-1	chr2	47088402	47089402	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1392297.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	6.29	10.6	0.0	6.75	9.33	4.82	9.51	7.07	18.11
Merged-chr5-38402456-3	chr5	38401961	38402961	+	754.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012363, intron 6 of 11)	ORR1D2|LTR|ERVL-MaLR	58072.0	NR_046191	78172.0	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	5.15	6.91	11.1	2.02	0.93	3.22	7.39	4.42	11.87
Merged-chr10-79835004-2	chr10	79834495	79835495	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	13974.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	4.0	3.69	0.92	11.47	2.8	0.8	3.17	2.65	0.0
Merged-chr3-87362423-1	chr3	87361923	87362923	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	4542.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	35.47	23.5	15.72	29.69	17.73	43.4	87.66	74.73	31.85
Merged-chr2-83929557-1	chr2	83929057	83930057	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027964, intron 3 of 8)	ORR1C2|LTR|ERVL-MaLR	11669.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	4.0	2.3	16.65	6.07	4.67	7.23	4.22	2.65	3.75
Merged-chr11-68875027-2	chr11	68874533	68875533	+	754.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13520.0	NM_177060	320040.0	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	8.01	7.37	3.7	3.37	2.8	1.61	6.34	0.88	5.0
Merged-chr10-57571463-3	chr10	57570940	57571940	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38911.0	NM_019760	56442.0	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	3.43	3.23	5.55	11.47	2.33	3.22	5.28	3.54	1.25
Merged-chr5-135118652-3	chr5	135118135	135119135	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152882, intron 2 of 16)	intron (NR_152882, intron 2 of 16)	11744.0	NR_152882	58805.0	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	5.15	1.84	1.85	4.72	1.87	1.61	1.06	0.0	1.25
Merged-chr6-91472384-3	chr6	91471898	91472898	+	753.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133928, intron 1 of 2)	MIR3|SINE|MIR	1025.0	NM_133928	72170.0	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	9.72	11.06	3.7	14.17	8.4	17.68	16.9	11.05	14.36
Merged-chr15-36367516-2	chr15	36367000	36368000	+	753.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-84353.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	3.43	1.38	0.0	2.02	4.2	4.82	5.28	1.77	5.0
Merged-chr19-10297197-3	chr19	10296694	10297694	+	753.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	7683.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	28.03	29.49	26.82	34.41	23.33	44.21	17.96	8.84	18.74
Merged-chr15-59705842-3	chr15	59705342	59706342	+	753.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57188.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	14.3	20.27	14.8	25.64	13.06	9.65	15.84	11.05	6.25
Merged-chr3-122509326-2	chr3	122508856	122509856	+	753.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013867, intron 5 of 11)	intron (NM_013867, intron 5 of 11)	25787.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	5.15	0.46	1.85	1.35	0.47	1.61	5.28	0.88	4.37
Merged-chr3-60541287-3	chr3	60540790	60541790	+	753.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	40111.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	16.02	11.98	14.8	14.17	11.66	9.65	21.12	20.78	4.37
Merged-chr17-66216121-3	chr17	66215635	66216635	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92615.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	17.16	10.14	10.17	17.54	12.13	12.86	21.12	14.59	4.37
Merged-chrX-12081844-3	chrX	12081314	12082314	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG-15595	-1261.0	NM_029510	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	18.31	13.82	4.62	10.12	10.73	13.66	22.18	11.94	15.61
Merged-chr10-41933073-3	chr10	41932602	41933602	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	intron (NM_001034858, intron 12 of 17)	45663.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	22.31	34.56	31.45	33.74	22.86	27.33	42.25	37.14	18.11
Merged-chr18-49978651-3	chr18	49978126	49979126	+	753.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177760)	promoter-TSS (NM_001177760)	-801.0	NM_001177760	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	20.59	11.06	10.17	19.57	6.06	16.88	10.56	4.42	5.0
Merged-chr13-55519777-2	chr13	55519280	55520280	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6334.0	NM_001114088	67399.0	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	14.87	6.91	7.4	7.42	1.87	6.43	4.22	5.31	5.62
Merged-chr15-99330224-2	chr15	99329714	99330714	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310622, intron 5 of 25)	intron (NM_001310622, intron 5 of 25)	26930.0	NM_001348256	54614.0	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	29.75	33.64	24.97	39.81	31.72	36.17	30.63	34.93	42.47
Merged-chr8-108742898-1	chr8	108742398	108743398	+	753.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	28254.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.44	9.22	3.7	16.87	8.4	6.43	4.22	5.75	7.49
Merged-chr6-83005708-2	chr6	83005206	83006206	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27765.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	143.59	118.42	99.89	149.79	131.09	121.37	94.0	126.02	51.21
Merged-chr1-153487012-2	chr1	153486541	153487541	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007842, intron 1 of 27)	CpG	619.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	91.53	84.78	78.62	82.99	92.37	87.61	92.94	107.45	73.07
Merged-chr13-112002763-2	chr13	112002266	112003266	+	753.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134830.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	4.58	4.15	0.0	14.17	12.13	8.04	8.45	6.63	1.25
Merged-chr14-122463524-2	chr14	122463010	122464010	+	753.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022987, intron 1 of 1)	CpG	2148.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	15.45	2.3	0.0	5.4	6.06	1.61	3.17	5.75	1.87
Merged-chr10-79682786-4	chr10	79682312	79683312	+	753.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359818, intron 1 of 4)	intron (NM_001359818, intron 1 of 4)	617.0	NM_001359817	216150.0	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|E2-CDC34|UBE2R1	cell division cycle 34	protein-coding	58.35	47.46	61.97	85.01	34.99	83.59	81.33	62.79	57.46
Merged-chr5-137331092-3	chr5	137330596	137331596	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359611, intron 4 of 14)	intron (NM_001359611, intron 4 of 14)	2486.0	NM_031406	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	7.44	10.6	20.35	10.8	5.13	12.06	12.67	8.84	8.74
Merged-chr19-28685670-1	chr19	28685170	28686170	+	753.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	-5593.0	NM_175459	226075.0	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	1.72	4.15	7.4	6.07	1.4	1.61	4.22	1.77	3.12
Merged-chr5-122844004-1	chr5	122843504	122844504	+	753.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30B_MM|LTR|ERV1	-6184.0	NM_030564	80751.0	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	1.72	1.38	5.55	2.7	2.33	6.43	11.62	11.5	5.0
Merged-chr9-56506568-3	chr9	56506035	56507035	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87916.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	17.73	19.35	40.7	14.84	20.99	29.74	5.28	3.98	14.36
Merged-chr11-69110957-3	chr11	69110543	69111543	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9410.0	NM_033041	84653.0	Mm.98505	NM_033041	ENSMUSG00000023781	Hes7	bHLHb37	hes family bHLH transcription factor 7	protein-coding	21.17	14.28	5.55	14.17	6.06	13.66	13.73	12.82	12.49
Merged-chr19-6997076-3	chr19	6996460	6997460	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026675)	promoter-TSS (NM_026675)	829.0	NR_027351	107328.0	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	24.6	11.98	15.72	15.52	7.93	26.53	28.52	22.99	18.74
Merged-chr2-128743570-3	chr2	128743075	128744075	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 4 of 18)	intron (NM_008587, intron 4 of 18)	44660.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	32.04	38.71	51.8	46.56	30.32	86.01	57.03	42.45	19.36
Merged-chr10-19209927-3	chr10	19209432	19210432	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42694.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	7.44	10.14	21.27	8.77	9.33	6.43	9.51	14.15	8.74
Merged-chr7-19279700-3	chr7	19279167	19280167	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	382.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	4.58	5.53	1.85	1.35	1.87	1.61	12.67	7.52	3.75
Merged-chr14-103065802-3	chr14	103065311	103066311	+	753.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4405.0	NM_001033242	211286.0	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	8.01	5.07	1.85	5.4	5.6	4.02	4.22	11.94	2.5
Merged-chr1-88588226-2	chr1	88587711	88588711	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	36694.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	199.07	263.57	166.49	262.47	319.56	234.71	267.21	328.09	137.4
Merged-chr2-116067280-2	chr2	116066773	116067773	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	48.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	2.29	3.69	7.4	2.7	1.87	1.61	2.11	1.77	3.75
Merged-chr7-101465985-2	chr7	101465474	101466474	+	753.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152192, intron 3 of 31)	intron (NR_152192, intron 3 of 31)	-9402.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	37.76	23.5	19.42	89.06	62.05	60.28	11.62	6.19	7.49
Merged-chr14-31234153-3	chr14	31233658	31234658	+	753.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16285.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	1.72	4.61	0.0	5.4	2.8	3.22	1.06	4.86	1.25
Merged-chr4-133200507-2	chr4	133200041	133201041	+	753.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	4886.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	16.59	10.14	24.05	20.92	6.53	21.7	4.22	2.65	1.25
Merged-chr6-126921709-2	chr6	126921201	126922201	+	753.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207210, intron 1 of 14)	intron (NM_207210, intron 1 of 14)	138.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	8.01	4.15	1.85	8.1	2.8	8.04	4.22	2.65	5.0
Merged-chr12-85589479-5	chr12	85588972	85589972	+	753.604736	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9633.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	46.34	36.4	18.5	45.88	23.79	30.54	44.36	21.67	25.61
Merged-chr14-20253451-2	chr14	20252951	20253951	+	753.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15711.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	2.86	5.07	3.7	2.7	0.47	6.43	3.17	0.0	1.25
Merged-chr18-69667409-3	chr18	69666899	69667899	+	753.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-258160.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	28.03	36.4	26.82	44.53	34.99	30.54	36.97	36.7	44.97
Merged-chr6-52306064-2	chr6	52305575	52306575	+	753.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-7423.0	NM_007966	14028.0	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	2.86	1.84	0.0	2.02	1.4	0.0	2.11	0.44	6.25
Merged-chr11-45698268-3	chr11	45697755	45698755	+	753.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109828.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	72.65	70.96	75.85	68.15	85.84	90.02	94.0	74.28	54.96
Merged-chr3-89339545-3	chr3	89339052	89340052	+	753.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009614)	TTS (NM_009614)	-1524.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	1.72	3.23	0.0	3.37	3.27	1.61	1.06	0.0	2.5
Merged-chr6-40818641-2	chr6	40818135	40819135	+	753.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	68859.0	NM_139296	194357.0	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	8.58	9.68	14.8	4.05	2.33	8.04	10.56	7.96	7.49
Merged-chr1-182906928-1	chr1	182906428	182907428	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47860.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	8.01	5.53	1.85	13.49	6.53	3.22	5.28	7.96	3.75
Merged-chr16-56062240-2	chr16	56061709	56062709	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360073, intron 1 of 24)	intron (NM_001360073, intron 1 of 24)	4679.0	NM_001360073	66315.0	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	4.58	6.45	1.85	4.05	6.53	13.66	7.39	7.07	14.36
Merged-chr1-33983732-2	chr1	33983237	33984237	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	Lx6|LINE|L1	-28088.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	36.04	21.66	34.22	27.66	17.26	11.25	12.67	16.8	17.49
Merged-chr13-13968980-2	chr13	13968475	13969475	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362405, intron 2 of 12)	intron (NM_001362405, intron 2 of 12)	14301.0	NM_178640	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	5.15	5.53	0.0	4.05	3.27	6.43	5.28	3.98	5.62
Merged-chr2-160010740-4	chr2	160010221	160011221	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-5932.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	73.79	69.58	55.5	83.66	63.45	97.26	57.03	43.33	44.34
Merged-chr13-98031460-3	chr13	98030950	98031950	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012026, intron 7 of 35)	intron (NM_012026, intron 7 of 35)	174715.0	NM_012026	110596.0	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	4.0	5.53	3.7	3.37	3.27	0.0	4.22	3.54	1.25
Merged-chr2-72202393-1	chr2	72201893	72202893	+	753.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	URR1A|DNA|hAT-Charlie	-83244.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.58	3.23	0.0	0.0	2.33	0.8	29.57	12.82	15.61
Merged-chr9-60600476-1	chr9	60599976	60600976	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001311095, intron 13 of 15)	intron (NM_001311095, intron 13 of 15)	-54594.0	NR_040463	100504561.0	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	17.73	9.22	7.4	10.8	6.06	12.06	3.17	4.42	3.75
Merged-chr13-52793728-2	chr13	52793228	52794228	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36523.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	1.72	3.23	0.0	6.75	1.4	4.82	3.17	0.0	2.5
Merged-chr9-21469202-2	chr9	21468702	21469702	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 4 of 19)	B3|SINE|B2	27362.0	NR_029585	387194.0		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	12.59	3.23	5.55	5.4	7.0	16.88	4.22	0.88	1.25
Merged-chr4-136028108-1	chr4	136027608	136028608	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6459.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	29.75	29.49	36.07	14.84	19.59	29.74	23.24	20.34	23.11
Merged-chr1-174036194-2	chr1	174035694	174036694	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4439.0	NM_172648	226695.0	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	7.44	4.61	14.8	9.45	9.8	12.86	24.29	8.84	11.24
Merged-chr9-96326629-3	chr9	96326119	96327119	+	753.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37096.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	18.31	14.28	23.12	13.49	8.4	18.49	30.63	28.3	22.48
Merged-chr14-21078141-1	chr14	21077641	21078641	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243041, intron 1 of 10)	intron (NM_001243041, intron 1 of 10)	1989.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	6.86	5.99	5.55	7.42	4.67	1.61	4.22	4.42	1.25
Merged-chr2-124707508-1	chr2	124707008	124708008	+	753.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53927.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	72.65	93.08	94.35	71.52	69.04	92.44	80.27	103.02	78.69
Merged-chr19-18624180-4	chr19	18623746	18624746	+	753.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	7567.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	34.32	35.02	27.75	54.65	33.12	41.8	30.63	30.07	18.11
Merged-chr16-32643847-3	chr16	32643348	32644348	+	753.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016788)	promoter-TSS (NM_016788)	-795.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	3.43	1.38	1.85	4.72	1.87	8.04	6.34	2.21	1.87
Merged-chr13-49271987-3	chr13	49271509	49272509	+	753.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-23303.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	26.89	28.11	36.07	42.51	27.99	43.4	36.97	32.72	26.23
Merged-chr16-33568722-3	chr16	33568191	33569191	+	753.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	50096.0	NM_001083902	171286.0	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	8.58	5.07	3.7	12.14	3.27	5.63	3.17	3.54	4.37
Merged-chr5-67451082-2	chr5	67450576	67451576	+	753.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-12822.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	19.45	21.2	17.57	47.9	45.25	58.68	19.01	20.78	23.11
Merged-chr19-29470135-3	chr19	29469629	29470629	+	753.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	intron (NM_021396, intron 5 of 5)	51858.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	26.31	21.66	23.12	37.11	27.06	28.94	32.74	36.26	13.74
Merged-chr1-161058716-3	chr1	161058212	161059212	+	753.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172644, intron 7 of 16)	intron (NM_172644, intron 7 of 16)	11948.0	NM_172644	226539.0	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	8.01	12.44	4.62	4.05	12.13	14.47	14.79	8.4	12.49
Merged-chr3-137879880-3	chr3	137879386	137880386	+	753.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033155, intron 1 of 7)	(TTG)n|Simple_repeat|Simple_repeat	12211.0	NM_001033155	70604.0	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	96.68	73.73	54.57	105.93	76.97	62.7	87.66	62.79	53.71
Merged-chr6-87807236-3	chr6	87806760	87807760	+	753.383362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104478, intron 1 of 2)	intron (NR_104478, intron 1 of 2)	2497.0	NM_133717	69834.0	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	135.0	132.71	84.17	112.0	69.04	72.34	107.73	91.53	78.07
Merged-chr5-108485425-2	chr5	108484925	108485925	+	753.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172716, intron 6 of 10)	intron (NM_172716, intron 6 of 10)	24093.0	NM_172716	69587.0	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	4.58	6.45	5.55	5.4	2.33	1.61	2.11	2.21	3.75
Merged-chr8-13200561-2	chr8	13200045	13201045	+	753.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025768)	promoter-TSS (NM_025768)	79.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	10.87	2.3	7.4	2.7	0.47	1.61	3.17	0.88	2.5
Merged-chr17-83312676-3	chr17	83312196	83313196	+	753.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38235.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	6.29	1.38	1.85	9.45	1.87	3.22	0.0	0.44	5.0
Merged-chr14-31394207-3	chr14	31393713	31394713	+	753.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	23464.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	109.26	113.35	124.87	139.67	102.63	160.76	128.85	117.17	93.68
Merged-chr3-95631062-3	chr3	95630541	95631541	+	753.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001026212)	TTS (NM_001026212)	6061.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	74.37	91.24	74.92	73.54	63.91	60.28	76.05	84.01	65.58
Merged-chr2-73060037-3	chr2	73059540	73060540	+	753.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79594.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	7.44	4.61	3.7	0.67	4.67	6.43	8.45	3.98	2.5
Merged-chr3-51338313-3	chr3	51337867	51338867	+	753.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	L1MB8|LINE|L1	2277.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	63.5	82.02	48.1	94.46	69.98	77.97	67.6	88.43	51.84
Merged-chr2-18026527-2	chr2	18026015	18027015	+	753.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028378)	promoter-TSS (NR_028378)	-734.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	6.86	2.76	4.62	12.82	4.2	5.63	4.22	3.54	2.5
Merged-chr8-71308127-2	chr8	71307598	71308598	+	753.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	PB1D11|SINE|Alu	35384.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	44.05	51.61	33.3	70.17	61.58	81.18	64.43	60.13	40.59
Merged-chr8-93917370-2	chr8	93916870	93917870	+	753.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	95270.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	7.44	9.22	8.32	4.05	11.66	9.65	5.28	1.77	10.62
Merged-chr7-100208056-3	chr7	100207552	100208552	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19555.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	29.17	22.12	38.85	31.71	23.79	36.17	22.18	20.78	26.85
Merged-chr2-170205830-3	chr2	170205141	170206141	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62966.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	69.22	76.95	37.92	86.36	59.71	92.44	74.99	81.36	48.71
Merged-chr2-167350741-1	chr2	167350241	167351241	+	753.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1563.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	64.07	41.47	25.9	89.06	43.39	53.05	78.16	76.05	40.59
Merged-chr13-97197049-1	chr13	97196549	97197549	+	753.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010422, intron 1 of 13)	intron (NM_010422, intron 1 of 13)	1308.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	10.87	13.36	20.35	29.01	20.53	24.92	30.63	37.14	20.61
Merged-chr6-51168244-1	chr6	51167744	51168744	+	753.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101666.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	1.72	3.23	5.55	3.37	2.8	3.22	8.45	2.21	6.25
Merged-chr10-120233782-1	chr10	120233282	120234282	+	753.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	6722.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	4.0	5.07	1.85	1.35	5.6	5.63	20.07	11.94	9.99
Merged-chr16-38455525-3	chr16	38455047	38456047	+	753.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2858.0	NM_007414	11544.0	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	53.77	42.85	38.85	36.43	25.66	54.66	44.36	33.6	44.34
Merged-chr12-98777635-2	chr12	98777129	98778129	+	753.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008506, intron 10 of 14)	L2|LINE|L2	6607.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	20.02	9.22	37.92	12.82	7.46	16.88	8.45	6.63	6.25
Merged-chr19-5839737-5	chr19	5839325	5840325	+	753.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_131212, exon 1 of 1)	non-coding (NR_131212, exon 1 of 1)	5653.0	NR_131212	66961.0	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	44.05	28.11	32.37	46.56	26.12	29.74	17.96	25.65	14.36
Merged-chr10-77903018-3	chr10	77902519	77903519	+	753.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145152)	promoter-TSS (NM_145152)	-483.0	NM_145152	237387.0	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	12.59	3.23	7.4	6.07	4.2	0.8	8.45	1.33	3.75
Merged-chr17-34005618-3	chr17	34005130	34006130	+	753.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	-5283.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	7.44	8.75	3.7	2.02	2.8	1.61	6.34	7.96	4.37
Merged-chr4-126301414-3	chr4	126300914	126301914	+	753.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	CpG	14620.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	6.29	3.23	1.85	2.02	5.6	6.43	2.11	3.1	3.12
Merged-chr8-10964933-2	chr8	10964421	10965421	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36464.0	NR_135302	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	4.58	2.3	0.0	1.35	1.4	3.22	3.17	0.44	1.25
Merged-chr13-45625973-2	chr13	45625470	45626470	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	MIRb|SINE|MIR	118526.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	2.86	5.53	7.4	1.35	7.0	9.65	2.11	6.19	1.25
Merged-chr13-13415616-1	chr13	13415116	13416116	+	753.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21986.0	NM_010917	18073.0	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.57	3.69	1.85	3.37	5.13	6.43	4.22	3.54	5.0
Merged-chr6-145863771-1	chr6	145863271	145864271	+	753.25	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001271768, exon 5 of 5)	3' UTR (NM_001271768, exon 5 of 5)	1649.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	7.44	4.15	3.7	28.34	25.19	12.86	5.28	4.42	2.5
Merged-chr5-31295765-3	chr5	31295271	31296271	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022424, exon 1 of 7)	5' UTR (NM_022424, exon 1 of 7)	161.0	NM_001356945	64339.0	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	5.15	1.84	1.85	6.75	1.4	6.43	2.11	0.0	2.5
Merged-chr6-134263554-2	chr6	134263063	134264063	+	753.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 8 of 8)	intron (NM_001303102, intron 8 of 8)	-132766.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	73.79	69.12	60.12	70.17	50.85	55.46	28.52	19.01	8.74
Merged-chr15-58592891-3	chr15	58592427	58593427	+	753.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	177459.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	5.72	8.29	5.55	12.14	5.13	9.65	8.45	7.96	9.99
Merged-chr1-91483467-3	chr1	91482905	91483905	+	753.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11263.0	NM_028718	74019.0	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.57	2.76	1.85	5.4	1.87	2.41	2.11	2.21	2.5
Merged-chr10-41518008-3	chr10	41517491	41518491	+	753.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie7|DNA|hAT-Charlie	-1509.0	NM_016898	53599.0	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	9.15	12.9	3.7	18.89	11.2	1.61	19.01	19.9	5.62
Merged-chr11-59180875-3	chr11	59180362	59181362	+	753.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080454, intron 1 of 1)	L1MD3|LINE|L1	1964.0	NM_175452	118454.0	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	13.73	9.68	3.7	7.42	2.8	12.86	7.39	6.19	8.74
Merged-chr2-128428717-3	chr2	128428222	128429222	+	753.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	629.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	360.39	423.46	246.96	267.19	327.02	256.41	371.78	462.51	215.46
Merged-chr6-136811540-3	chr6	136811045	136812045	+	753.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	3297.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	26.89	17.51	29.6	21.59	13.53	6.43	47.53	26.97	32.48
Merged-chr9-4380775-2	chr9	4380293	4381293	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145609, intron 1 of 2)	intron (NM_145609, intron 1 of 2)	4241.0	NM_145609	78100.0	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	22.31	19.35	29.6	19.57	22.86	28.13	29.57	19.01	13.74
Merged-chr11-58588206-2	chr11	58587675	58588675	+	753.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7338.0	NM_207153	258261.0	Mm.303171	NM_207153	ENSMUSG00000060765	Olfr325	MOR275-5	olfactory receptor 325	protein-coding	0.57	2.3	1.85	0.67	4.2	8.04	1.06	3.1	8.74
Merged-chr2-6722122-2	chr2	6721611	6722611	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310447)	promoter-TSS (NM_001310447)	-449.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	72.65	87.09	66.6	69.5	60.18	61.89	76.05	91.53	50.59
Merged-chr6-17640951-2	chr6	17640461	17641461	+	753.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	3951.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	44.62	57.14	31.45	43.18	27.99	36.97	78.16	103.47	38.72
Merged-chr12-40431223-2	chr12	40430706	40431706	+	753.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	intron (NM_172575, intron 1 of 12)	14584.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	133.86	145.15	127.64	141.69	119.89	82.79	180.61	204.72	73.07
Merged-chr2-90486579-2	chr2	90486073	90487073	+	753.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-7399.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	40.62	40.55	53.65	42.51	28.46	37.78	57.03	49.08	43.72
Merged-chr19-37284973-3	chr19	37284474	37285474	+	753.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031156, intron 17 of 23)	intron (NM_031156, intron 17 of 23)	-20879.0	NR_040298	77059.0	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	28.6	14.28	5.55	15.52	19.13	12.86	23.24	16.36	17.49
Merged-chr7-25084805-3	chr7	25084298	25085298	+	753.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7991.0	NM_175477	232976.0	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	11.44	7.83	12.95	6.75	8.4	11.25	13.73	3.98	11.24
Merged-chr7-72261023-2	chr7	72260544	72261544	+	753.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	Lx7|LINE|L1	45551.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	6.86	9.68	4.62	6.75	6.53	11.25	3.17	0.44	2.5
Merged-chr15-25365647-2	chr15	25365146	25366146	+	753.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	48118.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	14.3	7.37	9.25	27.66	19.59	11.25	22.18	17.24	18.11
Merged-chr11-85170242-3	chr11	85169732	85170732	+	753.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028589)	promoter-TSS (NM_028589)	-864.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	10.3	1.84	3.7	7.42	6.06	5.63	1.06	2.65	5.0
Merged-chr16-30733097-3	chr16	30732603	30733603	+	753.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	133380.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.29	3.69	3.7	4.72	1.87	1.61	5.28	3.98	3.75
Merged-chr9-109056793-4	chr9	109056373	109057373	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026381, exon 4 of 4)	3' UTR (NM_026381, exon 4 of 4)	2007.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	125.85	123.49	115.62	92.44	59.25	94.04	148.92	141.05	118.04
Merged-chr4-119968003-1	chr4	119967503	119968503	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	B4|SINE|B4	153325.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	73.22	55.29	56.42	110.65	83.97	102.08	62.31	61.46	55.58
Merged-chr16-33793392-1	chr16	33792892	33793892	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010739)	promoter-TSS (NM_010739)	-645.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	9.72	7.37	9.25	7.42	7.93	2.41	10.56	3.54	1.25
Merged-chr19-21407836-1	chr19	21407336	21408336	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 10 of 13)	MTD|LTR|ERVL-MaLR	64825.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	4.0	2.3	1.85	3.37	2.33	4.82	3.17	2.65	8.12
Merged-chr10-98778504-2	chr10	98778009	98779009	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-136133.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	23.45	23.04	15.72	33.06	20.53	25.72	36.97	22.99	24.36
Merged-chr5-23419438-1	chr5	23418938	23419938	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14915.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	40.04	65.43	77.7	42.51	46.18	45.82	53.87	51.73	53.71
Merged-chr7-42693511-1	chr7	42693011	42694011	+	753.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008427)	promoter-TSS (NM_001008427)	-793.0	NM_001008427	434179.0	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	22.31	22.58	15.72	16.87	11.2	26.53	17.96	19.01	17.49
Merged-chr12-8537326-1	chr12	8536826	8537826	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001286385)	TTS (NM_001286385)	2240.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	8.58	8.75	5.55	13.49	11.66	12.06	9.51	4.86	6.25
Merged-chr9-69557269-1	chr9	69556769	69557769	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100325.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	4.0	4.61	10.17	13.49	10.73	6.43	10.56	6.19	0.0
Merged-chr6-131290631-3	chr6	131290136	131291136	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025564, intron 1 of 4)	B2_Mm2|SINE|B2	2608.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	20.02	20.74	16.65	6.07	6.06	8.04	11.62	15.48	15.61
Merged-chr18-23805058-1	chr18	23804558	23805558	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	1088.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	262.57	308.26	133.19	259.09	237.45	145.49	256.65	361.69	124.91
Merged-chr1-182907489-1	chr1	182906989	182907989	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47299.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	13.16	12.44	1.85	12.82	7.93	3.22	11.62	7.07	3.75
Merged-chr13-29838882-1	chr13	29838382	29839382	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308486, intron 4 of 5)	intron (NM_001308486, intron 4 of 5)	16791.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	5.15	6.45	1.85	2.02	2.8	3.22	2.11	3.98	1.25
Merged-chr4-153835039-1	chr4	153834539	153835539	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	115437.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	4.58	1.84	1.85	6.07	7.0	10.45	0.0	0.44	2.5
Merged-chr8-79324240-1	chr8	79323740	79324740	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29162.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	4.0	3.23	5.55	5.4	2.33	1.61	2.11	1.77	5.0
Merged-chr9-69290477-1	chr9	69289977	69290977	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289916, intron 1 of 9)	CpG	636.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	6.29	5.53	5.55	17.54	20.53	2.41	3.17	3.1	7.49
Merged-chr11-70632959-1	chr11	70632459	70633459	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	-6163.0	NM_010326	14723.0	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GP-Ib alpha|GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	10.3	12.44	5.55	12.82	8.86	11.25	8.45	13.71	11.24
Merged-chr12-75634011-1	chr12	75633511	75634511	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	RMER10B|LTR|ERVL	-2262.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	4.58	0.92	1.85	2.02	6.06	9.65	3.17	6.63	5.0
Merged-chr13-20181537-1	chr13	20181037	20182037	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91030.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	37.18	41.47	30.52	39.13	25.19	53.85	58.09	45.54	43.09
Merged-chr18-60681071-3	chr18	60680563	60681563	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17653.0	NR_045401	328963.0	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	4.0	4.61	2.77	3.37	1.4	8.04	3.17	0.44	5.0
Merged-chr15-87083169-1	chr15	87082669	87083669	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-461130.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	1.14	1.38	0.0	3.37	7.46	0.8	3.17	0.0	5.62
Merged-chr12-69437329-1	chr12	69436829	69437829	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38221.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.58	2.76	0.0	7.42	7.0	6.43	5.28	0.88	11.24
Merged-chr11-3127945-2	chr11	3127435	3128435	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003517, intron 3 of 6)	intron (NR_003517, intron 3 of 6)	3914.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	30.89	34.56	25.9	39.81	37.32	53.85	5.28	1.33	39.35
Merged-chr12-91877814-1	chr12	91877314	91878314	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28657.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	2.29	2.76	0.0	0.67	0.93	0.0	0.0	1.33	0.0
Merged-chr15-97651464-1	chr15	97650964	97651964	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	54358.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	2.29	0.92	3.7	7.42	1.87	3.22	3.17	0.44	2.5
Merged-chr16-50364384-1	chr16	50363884	50364884	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	68005.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	17.16	36.4	31.45	22.27	26.59	31.35	20.07	26.53	6.87
Merged-chr10-83152358-2	chr10	83151870	83152870	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	166873.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.72	5.07	3.7	3.37	3.27	1.61	3.17	2.21	5.0
Merged-chr18-89597259-1	chr18	89596759	89597759	+	753.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039173, intron 2 of 7)	Lx2|LINE|L1	171877.0	NM_001039173	623279.0	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	4.58	4.15	1.85	2.02	1.87	0.0	3.17	3.98	3.12
Merged-chr11-100983710-1	chr11	100983210	100984210	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13093.0	NM_008986	19285.0	Mm.21864	NM_008986	ENSMUSG00000004044	Cavin1	2310075E07Rik|AW546441|Cav-p60|Cavin|Ptrf	caveolae associated 1	protein-coding	5.72	5.53	7.4	12.82	4.67	4.02	6.34	1.77	1.25
Merged-chr19-25628704-1	chr19	25628204	25629204	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18167.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	1.72	2.3	1.85	2.02	0.93	3.22	0.0	1.77	1.25
Merged-chr10-83301839-1	chr10	83301339	83302339	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177388, intron 4 of 10)	intron (NM_177388, intron 4 of 10)	35978.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	9.72	4.15	7.4	3.37	3.27	12.86	6.34	1.33	5.0
Merged-chr1-150374827-1	chr1	150374327	150375327	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 11 of 14)	exon (NM_145511, exon 11 of 14)	-18011.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	4.0	5.53	0.92	2.7	2.8	0.0	2.11	2.65	4.37
Merged-chr2-153225148-3	chr2	153224668	153225668	+	753.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198617, exon 1 of 1)	exon (NM_198617, exon 1 of 1)	273.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	14.3	15.21	8.32	49.25	35.45	35.37	38.02	27.41	23.11
Merged-chr1-74948931-1	chr1	74948431	74949431	+	753.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010544, intron 1 of 2)	intron (NM_010544, intron 1 of 2)	2741.0	NM_001313683	16147.0	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	1.14	0.0	0.0	3.37	2.8	3.22	4.22	0.88	1.25
Merged-chr16-44123512-2	chr16	44123023	44124023	+	752.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	15736.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	24.03	12.44	7.4	37.78	40.12	26.53	24.29	19.01	11.87
Merged-chr7-45561432-3	chr7	45560936	45561936	+	752.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025330, intron 5 of 8)	B3|SINE|B2	6508.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	8.58	5.53	1.85	8.1	1.87	7.23	4.22	5.75	1.25
Merged-chr6-145320347-2	chr6	145319852	145320852	+	752.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67273.0	NR_003625	381827.0	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	7.44	3.69	0.0	6.07	3.73	4.02	2.11	3.1	0.0
Merged-chr13-44305356-3	chr13	44304835	44305835	+	752.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-88848.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	6.86	5.07	5.55	5.4	5.13	6.43	1.06	3.1	5.62
Merged-chr4-134526405-3	chr4	134525904	134526904	+	752.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029759, exon 7 of 7)	3' UTR (NM_029759, exon 7 of 7)	8692.0	NM_001355188	76824.0	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	20.59	11.98	18.5	17.54	5.6	12.06	26.4	15.92	8.74
Merged-chr5-104042879-3	chr5	104042390	104043390	+	752.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3974.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	14.87	6.45	12.02	10.8	7.93	4.82	9.51	5.75	6.25
Merged-chr18-5101043-2	chr18	5100542	5101542	+	752.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347449, intron 22 of 30)	intron (NM_001347449, intron 22 of 30)	54453.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	34.32	32.25	24.05	101.21	48.05	81.99	47.53	16.36	12.49
Merged-chr1-131990613-3	chr1	131990128	131991128	+	752.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16977.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	16.02	16.59	6.47	20.24	6.53	17.68	9.51	9.29	1.87
Merged-chr1-161550870-2	chr1	161550374	161551374	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56217.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	5.15	5.07	7.4	8.1	3.27	4.82	4.22	1.77	10.62
Merged-chr6-38695564-2	chr6	38695046	38696046	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32477.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.43	6.91	5.55	8.1	0.47	8.04	3.17	2.65	0.0
Merged-chr4-3742639-2	chr4	3742149	3743149	+	752.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 3 of 12)	L1MB3|LINE|L1	27685.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	70.93	71.42	57.35	97.83	65.31	53.05	74.99	86.66	53.71
Merged-chr7-84150860-3	chr7	84150363	84151363	+	752.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133722, intron 1 of 2)	intron (NM_133722, intron 1 of 2)	1030.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	7.44	7.83	6.47	6.07	6.53	1.61	19.01	14.15	13.74
Merged-chr19-10844694-3	chr19	10844075	10845075	+	752.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	2031.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	110.98	88.01	110.99	91.76	70.44	71.54	164.76	173.33	116.16
Merged-chr18-70532251-3	chr18	70531728	70532728	+	752.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1907.0	NM_001289515	26447.0	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	32.61	29.95	28.67	25.64	23.79	28.94	47.53	43.33	19.98
Merged-chr8-94089890-3	chr8	94089416	94090416	+	752.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026116, intron 2 of 16)	intron (NM_026116, intron 2 of 16)	8895.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	11.44	11.06	5.55	14.17	7.0	12.06	7.39	7.52	6.25
Merged-chr6-99804404-3	chr6	99803876	99804876	+	752.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77984.0	NM_001037539	50501.0	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	4.0	0.92	1.85	1.35	0.93	3.22	3.17	1.33	1.25
Merged-chr4-7313407-2	chr4	7312902	7313902	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-247286.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	12.01	26.73	9.25	3.37	8.4	10.45	4.22	6.19	3.75
Merged-chr10-20040342-2	chr10	20039828	20040828	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 7 of 29)	intron (NM_008580, intron 7 of 29)	105802.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	43.48	52.07	51.8	55.33	48.05	24.11	44.36	52.18	34.97
Merged-chr5-95941901-2	chr5	95941394	95942394	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15045.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	5.72	5.53	2.77	8.77	4.2	4.82	4.22	5.31	2.5
Merged-chr10-111100247-3	chr10	111099772	111100772	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64530.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.58	3.69	4.62	4.05	6.53	6.43	1.06	3.54	0.0
Merged-chr1-151963593-2	chr1	151963103	151964103	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	126717.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	33.18	18.89	18.5	19.57	13.53	16.08	12.67	4.42	8.74
Merged-chr6-54760315-2	chr6	54759793	54760793	+	752.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56623.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	8.58	7.37	7.4	9.45	8.4	4.82	8.45	6.63	9.37
Merged-chr7-19281903-2	chr7	19281400	19282400	+	752.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013648)	promoter-TSS (NM_013648)	-724.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	9.72	7.37	1.85	3.37	1.87	4.02	9.51	9.29	10.62
Merged-chr3-95142388-3	chr3	95141854	95142854	+	752.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027206)	promoter-TSS (NM_027206)	6.0	NM_027206	69769.0	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	69.79	76.03	92.5	72.87	70.44	60.28	113.01	115.41	68.7
Merged-chr5-125271691-3	chr5	125271190	125272190	+	752.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69404.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.58	4.15	1.85	12.82	2.33	8.04	3.17	0.0	5.0
Merged-chr11-68623638-3	chr11	68623138	68624138	+	752.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36601.0	NM_177779	276920.0	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	3.43	3.23	1.85	6.07	2.33	3.22	1.06	3.98	0.0
Merged-chr8-119347666-2	chr8	119347172	119348172	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024219, intron 3 of 3)	intron (NM_024219, intron 3 of 3)	3134.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	11.44	3.69	12.95	10.8	6.53	5.63	6.34	4.42	8.74
Merged-chr12-98238663-3	chr12	98238174	98239174	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 7 of 16)	MTC|LTR|ERVL-MaLR	20785.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	15.45	11.52	19.42	10.12	18.66	16.08	15.84	12.38	11.24
Merged-chr4-153922611-1	chr4	153922111	153923111	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27865.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.57	1.38	1.85	1.35	0.93	2.41	3.17	3.1	3.75
Merged-chr4-43052847-3	chr4	43052366	43053366	+	752.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6087.0	NM_021468	22249.0	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	4.58	3.23	1.85	4.05	1.4	0.8	1.06	3.1	4.37
Merged-chr15-64382703-1	chr15	64382203	64383203	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 1 of 28)	CpG	216.0	NM_001276461	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	4.58	2.3	8.32	8.77	1.4	4.82	2.11	0.88	3.75
Merged-chr6-84796491-1	chr6	84795991	84796991	+	752.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 18 of 21)	intron (NM_177077, intron 18 of 21)	-202583.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	29.75	23.5	18.5	54.65	39.19	24.92	39.08	30.95	31.85
Merged-chr17-3092967-2	chr17	3092469	3093469	+	752.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8786.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	4.58	3.23	1.85	6.07	4.67	4.82	0.0	3.1	5.0
Merged-chr6-52479392-3	chr6	52478912	52479912	+	752.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13039.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	10.87	9.22	7.4	10.12	6.06	6.43	12.67	3.98	2.5
Merged-chr5-97962031-2	chr5	97961528	97962528	+	752.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133738, intron 11 of 16)	intron (NM_133738, intron 11 of 16)	68934.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	10.3	10.6	9.25	14.84	14.93	8.04	1.06	1.77	2.5
Merged-chr10-120197766-2	chr10	120197265	120198265	+	752.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	3832.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	2.29	5.07	1.85	3.37	4.2	2.41	8.45	4.42	11.87
Merged-chr19-25622697-3	chr19	25622208	25623208	+	752.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177360, exon 2 of 2)	exon (NM_177360, exon 2 of 2)	12171.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	1.72	1.38	1.85	2.02	3.73	3.22	3.17	0.88	1.25
Merged-chr5-120167862-3	chr5	120167372	120168372	+	752.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028762, intron 21 of 23)	intron (NM_028762, intron 21 of 23)	-28609.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	28.6	30.87	27.75	32.39	30.79	53.05	29.57	15.48	17.49
Merged-chr6-47319769-1	chr6	47319269	47320269	+	752.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75373.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	19.45	20.27	12.95	8.77	20.53	8.04	14.79	10.61	9.99
Merged-chr16-56715754-2	chr16	56715259	56716259	+	752.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357126, intron 1 of 8)	intron (NM_001357126, intron 1 of 8)	1691.0	NM_001357124	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	42.9	28.57	34.22	29.01	29.39	38.58	38.02	40.68	20.61
Merged-chr7-30000805-2	chr7	30000295	30001295	+	752.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	16840.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	10.3	7.83	5.55	23.62	17.73	4.82	1.06	2.65	9.99
Merged-chr9-40805457-3	chr9	40804973	40805973	+	752.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_031165)	TTS (NM_031165)	4200.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	19.45	27.19	13.87	19.57	17.26	19.29	59.15	42.89	18.74
Merged-chr19-18608069-1	chr19	18607569	18608569	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23744.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	12.01	13.36	3.7	19.57	9.8	20.09	13.73	11.05	13.12
Merged-chr10-128238284-1	chr10	128237784	128238784	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011589, intron 1 of 28)	intron (NM_011589, intron 1 of 28)	218.0	NM_011589	21853.0	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	3.43	2.76	14.8	6.75	2.33	4.82	3.17	0.88	6.25
Merged-chrX-167233513-2	chrX	167232945	167233945	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24227.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	16.59	14.75	24.05	14.17	19.59	16.08	20.07	11.05	19.98
Merged-chr3-86812888-1	chr3	86812388	86813388	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195500, intron 8 of 11)	intron (NM_001195500, intron 8 of 11)	107996.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	4.58	1.38	2.77	4.05	1.87	2.41	5.28	2.65	2.5
Merged-chr9-90408898-1	chr9	90408398	90409398	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-138129.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	3.43	1.38	1.85	4.05	6.53	4.82	6.34	3.54	1.87
Merged-chr4-145013486-1	chr4	145012986	145013986	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	120349.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	18.31	18.89	25.9	34.41	29.86	26.53	17.96	10.17	13.74
Merged-chr11-119952633-2	chr11	119952132	119953132	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	9540.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	37.18	20.74	29.6	21.59	20.06	25.72	30.63	24.32	27.48
Merged-chr11-79368430-1	chr11	79367930	79368930	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 1 of 57)	MLT-int|LTR|ERVL-MaLR	28538.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	7.44	10.14	3.7	10.12	5.6	24.11	12.67	5.75	8.12
Merged-chr6-124932101-2	chr6	124931603	124932603	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001170341, exon 2 of 9)	5' UTR (NM_001170341, exon 2 of 9)	715.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	71.51	55.29	41.62	61.4	48.52	50.64	52.81	58.37	26.23
Merged-chr12-73633871-1	chr12	73633371	73634371	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	L1MC3|LINE|L1	49075.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.86	12.44	19.42	21.59	13.53	28.94	12.67	6.63	11.24
Merged-chr11-59964989-1	chr11	59964489	59965489	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-45.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	2.86	5.99	3.7	7.42	2.33	0.0	4.22	5.75	1.25
Merged-chr14-57397787-1	chr14	57397287	57398287	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030004, intron 1 of 7)	intron (NM_030004, intron 1 of 7)	696.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	18.31	30.87	22.2	44.53	33.59	45.01	27.46	25.65	21.23
Merged-chr8-47940003-3	chr8	47939514	47940514	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	50537.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	16.02	17.51	7.4	21.59	14.46	17.68	21.12	18.13	16.24
Merged-chr8-25602705-2	chr8	25602215	25603215	+	752.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001308482, exon 1 of 8)	5' UTR (NM_001308482, exon 1 of 8)	431.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	217.38	202.28	197.94	192.97	132.02	181.66	227.08	197.21	147.39
Merged-chr15-58976658-3	chr15	58976146	58977146	+	752.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	42836.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	29.17	16.59	15.72	35.09	16.33	36.17	22.18	7.96	8.12
Merged-chr7-144907220-3	chr7	144906720	144907720	+	752.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7880.0	NM_001357868	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	4.58	2.76	1.85	2.02	6.06	3.22	4.22	0.0	2.5
Merged-chr14-30325218-2	chr14	30324707	30325707	+	752.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	MLT1K|LTR|ERVL-MaLR	28279.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.58	5.07	5.55	5.4	3.73	3.22	9.51	4.86	1.25
Merged-chr15-89181908-3	chr15	89181354	89182354	+	752.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027081)	TTS (NM_027081)	-1066.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	44.05	44.7	23.12	58.7	41.52	53.85	51.75	52.18	49.96
Merged-chr14-36867159-3	chr14	36866656	36867656	+	752.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52379.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	1.72	5.07	7.4	4.72	1.87	1.61	0.0	4.42	1.25
Merged-chr7-59977611-3	chr7	59977116	59978116	+	752.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_146211, intron 17 of 171)	(A)n|Simple_repeat|Simple_repeat	1240.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	5.72	8.29	5.55	6.75	9.8	8.84	19.01	21.22	16.86
Merged-chr2-91182411-4	chr2	91181882	91182882	+	752.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177719, intron 1 of 34)	intron (NM_001177719, intron 1 of 34)	665.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	20.59	13.36	53.65	33.74	29.86	28.13	25.35	23.43	21.23
Merged-chr19-47127262-2	chr19	47126755	47127755	+	752.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011053, exon 30 of 36)	exon (NM_011053, exon 30 of 36)	11039.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	17.16	6.91	7.4	18.89	5.6	12.06	25.35	15.92	8.74
Merged-chr5-122811892-2	chr5	122811390	122812390	+	752.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042491, intron 5 of 16)	B3|SINE|B2	9452.0	NM_021505	59008.0	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	2.86	5.99	0.0	3.37	5.13	7.23	4.22	3.54	7.49
Merged-chr18-11844212-2	chr18	11843704	11844704	+	752.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-3766.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	12.59	5.53	5.55	7.42	6.06	8.04	3.17	0.88	6.25
Merged-chr3-135579255-2	chr3	135578729	135579729	+	752.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	93618.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	10.3	7.37	9.25	6.07	6.06	12.06	2.11	4.86	2.5
Merged-chr14-17633070-2	chr14	17632548	17633548	+	752.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27912.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.29	3.23	6.47	6.75	3.73	15.27	9.51	6.19	6.87
Merged-chr11-80378047-3	chr11	80377530	80378530	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027472)	promoter-TSS (NM_027472)	-15.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	19.45	16.59	20.35	24.29	14.93	20.9	33.8	28.3	23.11
Merged-chr7-97748324-3	chr7	97747843	97748843	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10096.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	53.2	61.75	72.15	51.95	51.78	49.83	48.58	69.86	43.09
Merged-chr18-67167184-1	chr18	67166684	67167684	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	33624.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	9.72	6.91	3.7	2.7	4.67	3.22	2.11	2.21	10.62
Merged-chr7-80055988-3	chr7	80055473	80056473	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	19284.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	72.08	57.6	57.35	48.58	47.12	41.8	38.02	45.99	33.1
Merged-chr2-109932344-1	chr2	109931844	109932844	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	14697.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	2.86	4.61	3.7	4.72	5.13	4.02	5.28	7.96	9.99
Merged-chr7-49004497-1	chr7	49003997	49004997	+	752.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	45424.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	11.44	7.83	12.95	14.17	12.13	12.86	22.18	25.65	6.87
Merged-chr14-93697893-3	chr14	93697391	93698391	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	192778.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	5.72	13.36	8.32	10.8	13.06	9.65	14.79	6.19	6.25
Merged-chr6-72758809-3	chr6	72758307	72759307	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	ORR1D2-int|LTR|ERVL-MaLR	30238.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	10.87	5.53	3.7	5.4	8.4	6.43	14.79	7.07	11.24
Merged-chr6-34511596-1	chr6	34511096	34512096	+	752.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35240.0	NM_007563	12183.0	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.0	2.3	0.0	3.37	0.93	1.61	3.17	0.44	3.75
Merged-chr8-11006469-2	chr8	11005946	11006946	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-1404.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	3.43	3.69	0.0	3.37	1.87	2.41	3.17	0.88	1.87
Merged-chr11-97229614-1	chr11	97229114	97230114	+	752.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008942, intron 14 of 22)	intron (NM_008942, intron 14 of 22)	-41722.0	NM_008379	16211.0	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.0	3.23	0.92	6.75	3.27	1.61	52.81	61.46	28.1
Merged-chrX-36127810-3	chrX	36127323	36128323	+	752.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	15715.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	16.59	21.2	9.25	6.07	7.0	16.88	14.79	9.73	17.49
Merged-chr2-9878615-2	chr2	9878116	9879116	+	752.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008091)	promoter-TSS (NM_008091)	-16.0	NM_001355112	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	3.43	5.07	1.85	4.72	4.2	4.82	5.28	0.44	2.5
Merged-chr2-19120130-3	chr2	19119650	19120650	+	752.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78968.0	NM_001271563	70882.0	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	5.15	5.99	1.85	12.14	2.33	0.0	1.06	3.54	3.75
Merged-chr1-53820283-2	chr1	53819777	53820777	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-29147.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	88.67	114.74	71.22	62.07	72.78	74.75	119.35	111.87	68.07
Merged-chrY-1244960-2	chrY	1244458	1245458	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009484, intron 2 of 26)	intron (NM_009484, intron 2 of 26)	801.0	NM_001326683	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	166.47	235.92	116.54	150.46	176.81	117.35	175.33	246.29	103.67
Merged-chr18-12927576-2	chr18	12927037	12928037	+	752.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	14304.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	18.88	17.05	20.35	17.54	14.46	15.27	7.39	12.38	18.74
Merged-chr11-94074554-2	chr11	94074042	94075042	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	Lx8|LINE|L1	30337.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.86	2.76	1.85	225.36	123.16	72.34	293.62	348.87	60.58
Merged-chr4-136878833-2	chr4	136878319	136879319	+	752.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	7358.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	5.72	7.37	16.65	6.07	5.13	16.08	12.67	5.75	6.87
Merged-chr6-113751304-3	chr6	113750770	113751770	+	752.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-10589.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	61.21	89.39	80.47	78.27	62.98	129.41	104.56	123.81	70.57
Merged-chr16-24902576-3	chr16	24902081	24903081	+	752.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-157058.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	15.45	14.75	5.55	33.06	28.46	25.72	9.51	16.8	6.25
Merged-chr11-102456171-3	chr11	102455638	102456638	+	752.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010575, intron 27 of 29)	intron (NM_010575, intron 27 of 29)	-8475.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	3.43	2.3	2.77	2.02	0.47	6.43	6.34	1.77	1.25
Merged-chr15-64098237-3	chr15	64097726	64098726	+	752.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-37778.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	22.31	31.33	36.07	14.84	13.53	7.23	62.31	36.7	28.1
Merged-chr15-101155225-3	chr15	101154732	101155732	+	752.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-18840.0	NM_007395	11479.0	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ALK-4|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	9.15	7.83	12.95	12.82	3.73	12.86	15.84	25.65	11.24
Merged-chr13-60658332-2	chr13	60657873	60658873	+	752.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	L1_Mus1|LINE|L1	56162.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	12.01	15.21	14.8	18.22	15.39	32.15	14.79	14.15	16.86
Merged-chr11-83615694-2	chr11	83615194	83616194	+	752.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036453, intron 5 of 8)	intron (NR_036453, intron 5 of 8)	-22607.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	9.72	11.98	3.7	38.46	16.33	23.31	30.63	14.15	5.0
Merged-chr4-56262229-3	chr4	56261751	56262751	+	752.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	479174.0	NM_025271	11471.0	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Gm26657|Tact1	actin-like 7b	protein-coding	4.0	1.84	1.85	0.67	3.73	5.63	1.06	2.21	2.5
Merged-chr8-71528842-2	chr8	71528337	71529337	+	752.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8600.0	NM_198095	69550.0	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	38.33	26.73	43.47	4.05	1.4	3.22	40.14	31.39	28.73
Merged-chr4-95047252-4	chr4	95046733	95047733	+	752.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4989.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	6.29	5.53	0.0	6.75	3.27	1.61	2.11	2.65	3.75
Merged-chr5-96206903-3	chr5	96206405	96207405	+	752.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3210.0	NM_001039084	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	5.15	17.51	19.42	12.14	16.33	16.08	8.45	7.96	18.11
Merged-chr18-56523756-2	chr18	56523251	56524251	+	752.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14388.0	NR_106160	102465790.0		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	3.43	1.84	3.7	4.72	1.87	0.0	2.11	0.0	0.0
Merged-chr2-158107451-2	chr2	158106952	158107952	+	752.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15655.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.86	1.38	3.7	4.05	1.87	3.22	4.22	0.88	3.75
Merged-chr1-133613851-3	chr1	133613353	133614353	+	752.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER96|DNA|hAT-Tip100	-3573.0	NM_009227	20643.0	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	3.43	3.69	2.77	4.05	6.53	11.25	5.28	4.42	3.75
Merged-chr19-41797019-1	chr19	41796519	41797519	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027667, intron 1 of 11)	intron (NM_027667, intron 1 of 11)	5065.0	NM_001163495	71085.0	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	10.87	5.99	5.55	14.17	8.4	8.04	7.39	3.1	6.25
Merged-chr3-113630932-2	chr3	113630419	113631419	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026043)	promoter-TSS (NM_026043)	-770.0	NM_001038696	67225.0	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	41.19	41.01	38.85	31.71	42.45	57.87	42.25	46.43	31.23
Merged-chr17-32809979-1	chr17	32809479	32810479	+	752.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001267583)	promoter-TSS (NM_001267583)	-48.0	NM_183177	240063.0	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	4.0	3.69	5.55	2.7	1.4	2.41	16.9	3.54	4.37
Merged-chr9-47899967-1	chr9	47899467	47900467	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-81759.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	1.14	0.92	0.0	7.42	5.6	6.43	1.06	1.33	3.12
Merged-chr1-191069437-1	chr1	191068937	191069937	+	752.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198654, intron 2 of 5)	intron (NM_198654, intron 2 of 5)	6416.0	NM_198654	381318.0	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	10.87	10.14	11.1	15.52	0.93	9.65	117.24	121.6	50.59
Merged-chr6-38610350-2	chr6	38609841	38610841	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_138680)	TTS (NM_138680)	26898.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	12.59	7.37	9.25	16.87	10.26	8.04	9.51	12.82	8.12
Merged-chr13-75871512-2	chr13	75871015	75872015	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028493, exon 12 of 12)	3' UTR (NM_028493, exon 12 of 12)	31629.0	NM_053108	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	17.16	15.67	16.65	11.47	11.2	6.43	14.79	11.94	11.87
Merged-chr7-114494219-1	chr7	114493719	114494719	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 2 of 15)	intron (NM_011055, intron 2 of 15)	68753.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	6.86	2.3	5.55	5.4	4.2	9.65	8.45	5.31	1.87
Merged-chr13-6639782-1	chr13	6639282	6640282	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019703, intron 1 of 21)	B1_Mur3|SINE|Alu	8989.0	NM_019703	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	7.44	6.91	5.55	7.42	4.2	14.47	8.45	3.54	6.25
Merged-chr4-63396931-1	chr4	63396431	63397431	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045514, intron 2 of 21)	intron (NM_001045514, intron 2 of 21)	1309.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	9.72	6.91	7.4	17.54	3.27	10.45	11.62	6.63	12.49
Merged-chr13-113426104-1	chr13	113425604	113426604	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76740.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	12.59	10.6	6.47	13.49	3.27	7.23	12.67	3.54	6.25
Merged-chr14-59441619-1	chr14	59441119	59442119	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001320725)	promoter-TSS (NM_001320725)	656.0	NM_001360592	69008.0	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	124.14	135.93	90.65	86.36	104.5	107.71	115.12	125.13	69.32
Merged-chr7-81274489-1	chr7	81273989	81274989	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	L1M3|LINE|L1	60685.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	14.87	14.28	5.55	20.24	11.66	11.25	20.07	2.65	3.12
Merged-chr15-90670263-1	chr15	90669763	90670763	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	B4A|SINE|B4	9125.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	18.31	15.21	12.02	39.13	20.99	27.33	19.01	11.05	11.24
Merged-chr5-92367922-3	chr5	92367426	92368426	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	MTD|LTR|ERVL-MaLR	-4630.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	16.59	17.97	3.7	16.19	10.26	19.29	21.12	15.48	9.99
Merged-chr15-53723873-1	chr15	53723373	53724373	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-109594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	29.75	34.1	20.35	18.22	14.0	15.27	20.07	21.67	11.24
Merged-chr10-99581290-3	chr10	99580780	99581780	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27891.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	2.29	4.61	7.4	7.42	5.6	1.61	3.17	6.63	6.25
Merged-chr5-104948107-1	chr5	104947607	104948607	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	34610.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	25.17	23.96	16.65	11.47	7.93	12.86	11.62	15.48	3.75
Merged-chr1-179398944-1	chr1	179398444	179399444	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	119097.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	4.58	5.07	5.55	2.7	2.8	1.61	2.11	1.77	5.0
Merged-chrX-152001238-1	chrX	152000738	152001738	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016763)	promoter-TSS (NM_016763)	-658.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	16.02	24.42	17.57	27.66	24.72	28.94	36.97	42.01	13.74
Merged-chr4-120027439-1	chr4	120026939	120027939	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-133767.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.29	1.38	5.55	10.12	4.67	3.22	7.39	4.86	0.0
Merged-chr4-123591429-2	chr4	123590916	123591916	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	MTC|LTR|ERVL-MaLR	-25004.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	10.87	8.29	5.55	12.82	11.2	4.82	5.28	12.38	14.36
Merged-chr14-55680838-1	chr14	55680338	55681338	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145705, exon 4 of 9)	exon (NM_145705, exon 4 of 9)	979.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	87.52	88.93	42.55	58.03	47.12	45.82	68.65	90.2	31.85
Merged-chr17-73933845-1	chr17	73933345	73934345	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011723, intron 6 of 35)	intron (NM_011723, intron 6 of 35)	16351.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	19.45	14.28	7.4	17.54	8.86	12.86	8.45	7.96	5.0
Merged-chrX-77638209-1	chrX	77637709	77638709	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 2 of 15)	intron (NM_020601, intron 2 of 15)	37243.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	2.86	1.84	1.85	4.05	0.93	3.22	0.0	0.88	1.25
Merged-chr11-34032343-1	chr11	34031843	34032843	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-14585.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	213.38	217.49	167.42	228.73	185.67	180.85	182.72	199.86	154.88
Merged-chr10-75836229-3	chr10	75835747	75836747	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1366.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	159.6	159.89	114.69	177.45	143.68	122.18	180.61	152.55	68.7
Merged-chr5-121409098-2	chr5	121408568	121409568	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 3 of 23)	intron (NM_172722, intron 3 of 23)	11086.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	10.87	10.14	12.95	10.8	6.06	20.09	8.45	5.31	9.37
Merged-chr12-4981542-1	chr12	4981042	4982042	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362349, intron 17 of 27)	intron (NM_001362349, intron 17 of 27)	64189.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	6.29	13.82	22.2	1.35	3.27	3.22	14.79	6.63	10.62
Merged-chr8-70703579-2	chr8	70703149	70704149	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5910.0	NM_001286944	16478.0	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	10.87	5.07	7.4	9.45	2.33	3.22	6.34	4.42	5.0
Merged-chr11-11780001-1	chr11	11779501	11780501	+	752.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	28961.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	9.15	13.36	18.5	5.4	5.13	12.86	3.17	7.52	5.0
Merged-chr14-25371164-1	chr14	25370664	25371664	+	752.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88021.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	5.15	4.15	13.87	8.1	2.8	11.25	3.17	0.88	5.0
Merged-chr4-124234598-3	chr4	124234126	124235126	+	751.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	251333.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	7.44	5.07	10.17	6.07	6.53	7.23	9.51	8.84	9.99
Merged-chr9-44191351-3	chr9	44190853	44191853	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	42693.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	14.87	22.58	22.2	31.04	23.33	20.9	21.12	17.24	24.98
Merged-chr13-51742975-3	chr13	51742478	51743478	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	50769.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	8.01	6.91	5.55	1.35	3.27	6.43	5.28	5.31	5.0
Merged-chr16-90316045-3	chr16	90315558	90316558	+	751.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31555.0	NM_178923	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	3.43	3.23	1.85	4.05	3.73	3.22	9.51	4.86	5.62
Merged-chr13-40952996-3	chr13	40952506	40953506	+	751.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	35372.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	22.31	20.74	4.62	19.57	13.53	4.82	17.96	17.24	5.0
Merged-chr17-30559728-2	chr17	30559222	30560222	+	751.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	16565.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	16.02	6.45	3.7	4.72	4.2	5.63	2.11	3.54	1.25
Merged-chr1-10009185-2	chr1	10008682	10009682	+	751.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110971)	promoter-TSS (NR_110971)	-46.0	NM_145692	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	6.29	4.15	0.0	5.4	2.8	4.02	5.28	4.42	1.25
Merged-chr15-73725436-3	chr15	73724962	73725962	+	751.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166388, exon 1 of 6)	5' UTR (NM_001166388, exon 1 of 6)	532.0	NM_001166388	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	105.83	140.08	101.74	118.75	125.02	122.98	163.71	175.1	89.93
Merged-chr15-50763571-1	chr15	50763071	50764071	+	751.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	125478.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	16.59	15.67	10.17	18.22	16.33	24.11	27.46	40.68	19.36
Merged-chr14-55918856-3	chr14	55918351	55919351	+	751.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18619.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	1.72	2.3	3.7	2.7	0.93	0.0	1.06	3.1	9.37
Merged-chr15-103215309-3	chr15	103214811	103215811	+	751.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110216)	promoter-TSS (NM_001110216)	41.0	NM_007626	12419.0	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	9.15	12.9	1.85	12.82	7.0	1.61	12.67	9.29	7.49
Merged-chr1-43903026-2	chr1	43902527	43903527	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30967.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	14.3	3.69	1.85	2.7	4.67	1.61	9.51	4.86	1.25
Merged-chr5-111125011-2	chr5	111124526	111125526	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	120882.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	11.44	11.06	7.4	10.12	11.66	12.86	10.56	6.19	6.25
Merged-chr19-3923874-2	chr19	3923383	3924383	+	751.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026316, exon 2 of 10)	exon (NM_026316, exon 2 of 10)	5833.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	56.63	38.25	37.92	78.94	23.79	58.68	43.3	44.22	33.72
Merged-chr4-3760603-2	chr4	3760104	3761104	+	751.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	45640.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	4.58	0.92	0.0	33.74	25.19	8.04	22.18	29.18	3.75
Merged-chr10-34267891-1	chr10	34267391	34268391	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	31.46	26.26	11.1	30.36	34.06	24.11	36.97	24.76	13.74
Merged-chr5-114926324-3	chr5	114925816	114926816	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	intron (NM_001359946, intron 1 of 4)	3076.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	73.79	65.43	38.85	126.17	77.44	57.87	137.3	97.28	49.96
Merged-chr2-90496489-1	chr2	90495989	90496989	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-17315.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	25.74	25.34	26.82	26.99	15.39	20.09	40.14	28.3	20.61
Merged-chr4-107802052-1	chr4	107801552	107802552	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033496)	promoter-TSS (NR_033496)	-207.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	2.29	1.84	0.0	2.7	1.87	0.0	5.28	0.0	5.0
Merged-chr6-4973538-3	chr6	4973034	4974034	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	70214.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.43	4.61	5.55	6.07	7.0	4.82	5.28	0.88	3.12
Merged-chr19-16373301-3	chr19	16372910	16373910	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-58406.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	6.86	7.83	15.72	8.77	7.46	8.04	11.62	8.4	8.74
Merged-chr14-14632608-1	chr14	14632108	14633108	+	751.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70417.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	22.88	14.28	13.87	13.49	19.13	18.49	15.84	9.73	8.12
Merged-chr5-130219674-3	chr5	130219200	130220200	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081394)	promoter-TSS (NM_001081394)	-44.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	16.59	16.59	22.2	10.12	9.8	16.08	19.01	15.03	18.11
Merged-chr4-63899347-3	chr4	63898847	63899847	+	751.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38063.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	13.16	9.22	9.25	18.89	9.33	12.86	4.22	7.52	1.25
Merged-chr6-28833462-2	chr6	28832897	28833897	+	751.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	CpG	-1650.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	6.86	0.46	3.7	8.1	1.4	7.23	5.28	0.88	1.25
Merged-chr15-96697106-2	chr15	96696615	96697615	+	751.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355633, intron 3 of 14)	intron (NM_001355633, intron 3 of 14)	2613.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	29.75	13.82	5.55	18.89	7.0	11.25	49.64	28.74	8.12
Merged-chr6-5363199-3	chr6	5362689	5363689	+	751.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20197.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	25.74	34.56	32.37	29.01	26.59	27.33	40.14	34.05	30.6
Merged-chr15-55191378-3	chr15	55190888	55191888	+	751.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	MTC|LTR|ERVL-MaLR	57952.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	12.59	25.34	6.47	13.49	11.2	26.53	12.67	17.69	26.23
Merged-chr1-43843655-3	chr1	43843108	43844108	+	751.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15900.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	27.46	21.2	13.87	12.82	21.46	24.92	24.29	10.61	16.24
Merged-chr13-81171459-3	chr13	81170975	81171975	+	751.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 86 of 89)	intron (NM_054053, intron 86 of 89)	207401.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.59	6.91	9.25	10.8	7.46	7.23	11.62	4.42	3.12
Merged-chr10-59692649-3	chr10	59692142	59693142	+	751.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9921.0	NM_001359267	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	9.15	6.91	1.85	4.05	6.53	3.22	5.28	1.77	3.12
Merged-chr7-67380340-3	chr7	67379853	67380853	+	751.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7495.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	73.79	69.58	38.85	71.52	56.91	46.62	39.08	35.82	32.48
Merged-chr13-6241679-3	chr13	6241183	6242183	+	751.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-306474.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	20.59	18.89	11.1	18.22	20.53	12.86	9.51	5.31	4.37
Merged-chr13-91170101-3	chr13	91169583	91170583	+	751.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	53904.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	5.72	2.76	5.55	11.47	4.67	0.8	3.17	1.77	3.12
Merged-chr1-152674040-2	chr1	152673535	152674535	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	intron (NM_001346118, intron 2 of 18)	-48818.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	8.58	5.07	5.55	14.17	7.0	22.51	7.39	8.4	10.62
Merged-chrX-167163024-3	chrX	167162528	167163528	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46190.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	21.74	18.89	5.55	12.82	9.33	7.23	10.56	8.84	7.49
Merged-chr14-121405377-2	chr14	121404885	121405885	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26155.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.86	1.84	0.92	5.4	0.47	1.61	4.22	3.98	0.0
Merged-chr4-34457422-2	chr4	34456934	34457934	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93181.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	4.58	3.69	1.85	3.37	5.6	11.25	9.51	4.42	3.75
Merged-chr1-133136078-2	chr1	133135585	133136585	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	MIR|SINE|MIR	4919.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	16.59	18.89	2.77	16.87	13.53	14.47	8.45	11.94	13.74
Merged-chr6-48395703-1	chr6	48395203	48396203	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152251)	promoter-TSS (NR_152251)	117.0	NM_001362144	77827.0	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	10.87	8.29	7.4	7.42	9.33	8.04	7.39	8.84	8.74
Merged-chr7-44072943-1	chr7	44072443	44073443	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20653.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	4.0	4.61	0.0	3.37	0.47	0.8	2.11	1.33	1.25
Merged-chr7-118232819-1	chr7	118232319	118233319	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001031814, intron 1 of 62)	intron (NM_001031814, intron 1 of 62)	10818.0	NM_001031814	233789.0	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	11.44	18.43	20.35	16.87	14.93	14.47	13.73	15.92	14.99
Merged-chr16-65174725-1	chr16	65174225	65175225	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68941.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	7.44	6.45	3.7	7.42	3.73	4.82	4.22	4.42	5.0
Merged-chr11-106770491-2	chr11	106769995	106770995	+	751.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_148431, intron 7 of 7)	B3|SINE|B2	8971.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	24.6	22.12	18.5	18.89	16.33	12.06	14.79	10.17	15.61
Merged-chr4-58552004-2	chr4	58551514	58552514	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	1279.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.0	2.3	3.7	6.07	4.2	0.0	7.39	7.07	8.74
Merged-chr6-137685506-1	chr6	137685006	137686006	+	751.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36221.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	6.86	4.61	7.4	7.42	5.6	7.23	3.17	2.65	4.37
Merged-chr5-142901602-3	chr5	142901166	142902166	+	751.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5088.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	9.72	10.14	24.97	2.7	7.93	12.86	14.79	14.15	8.12
Merged-chr12-85729582-3	chr12	85729086	85730086	+	751.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16953.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	4.0	4.61	0.0	4.72	2.33	3.22	5.28	3.54	0.0
Merged-chr5-123142996-2	chr5	123142490	123143490	+	751.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001040398, exon 2 of 17)	exon (NM_001040398, exon 2 of 17)	797.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	26.89	19.81	44.4	20.24	14.93	36.97	35.91	27.86	33.1
Merged-chr7-80439959-2	chr7	80439457	80440457	+	751.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-34521.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	33.18	30.41	22.2	37.78	27.52	29.74	28.52	35.82	29.98
Merged-chr10-39444173-2	chr10	39443660	39444660	+	751.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	74361.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	37.18	33.18	24.05	43.86	27.99	31.35	54.92	37.58	29.35
Merged-chr10-119051923-3	chr10	119051440	119052440	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1441.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	35.47	21.66	13.87	48.58	27.06	30.54	14.79	20.34	20.61
Merged-chr16-16303513-3	chr16	16302999	16303999	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_038046, exon 1 of 5)	non-coding (NR_038046, exon 1 of 5)	534.0	NM_198246	70120.0	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	70.36	78.33	53.65	83.66	81.64	114.14	82.38	60.13	58.71
Merged-chr10-61382016-3	chr10	61381505	61382505	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1518.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	8.58	11.52	17.57	10.8	9.8	15.27	11.62	9.73	12.49
Merged-chr3-40525501-3	chr3	40525003	40526003	+	751.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2591.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	5.15	8.75	7.4	2.02	2.8	0.8	6.34	7.52	1.87
Merged-chr2-124897448-3	chr2	124896947	124897947	+	751.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170680.0	NM_175034	317750.0	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	4.58	5.99	7.4	6.75	6.53	3.22	3.17	5.31	9.99
Merged-chr5-63966552-3	chr5	63966067	63967067	+	751.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2330.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	18.88	14.28	12.95	14.84	11.2	18.49	25.35	18.57	28.73
Merged-chr7-113556374-3	chr7	113555873	113556873	+	751.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126544, intron 1 of 5)	intron (NR_126544, intron 1 of 5)	8614.0	NR_126544	69295.0	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	8.01	5.07	10.17	7.42	6.06	6.43	3.17	3.98	7.49
Merged-chr2-118660129-3	chr2	118659633	118660633	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3444.0	NM_001033254	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	5.15	3.23	2.77	4.72	2.8	4.82	4.22	4.42	1.87
Merged-chr4-43454252-2	chr4	43453757	43454757	+	751.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007654, exon 2 of 9)	exon (NM_007654, exon 2 of 9)	369.0	NM_001110320	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	71.51	44.7	51.8	62.75	47.12	95.65	63.37	76.94	50.59
Merged-chr16-58690614-3	chr16	58690059	58691059	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20351.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	16.02	14.75	14.8	19.57	9.8	12.06	10.56	13.27	9.99
Merged-chr9-44461479-3	chr9	44461070	44462070	+	751.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6803.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	125.28	144.69	91.57	129.55	112.43	98.06	157.37	197.65	87.43
Merged-chr8-36612727-4	chr8	36612163	36613163	+	751.229187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	1280.0	NM_015802	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	2.86	4.61	0.0	6.07	7.93	5.63	6.34	9.73	6.25
Merged-chr4-101255230-3	chr4	101254754	101255754	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	(CA)n|Simple_repeat|Simple_repeat	10028.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	29.75	26.73	31.45	17.54	18.19	36.17	29.57	19.9	10.62
Merged-chr13-100517897-3	chr13	100517372	100518372	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360539, intron 2 of 6)	intron (NM_001360539, intron 2 of 6)	-25263.0	NM_022011	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	10.3	8.29	7.4	7.42	7.46	3.22	14.79	25.65	12.49
Merged-chr8-39639892-3	chr8	39639424	39640424	+	751.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	2754.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	37.18	121.65	47.17	86.36	89.57	72.34	111.96	146.36	54.96
Merged-chr17-67207287-2	chr17	67206759	67207759	+	751.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	147200.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.3	15.21	14.8	15.52	11.2	12.86	57.03	40.68	21.86
Merged-chr15-100463907-3	chr15	100463393	100464393	+	751.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5118.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	11.44	10.6	7.4	12.82	4.67	4.82	12.67	5.31	2.5
Merged-chr15-66785643-3	chr15	66785133	66786133	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 6 of 7)	intron (NM_001029841, intron 6 of 7)	46196.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	18.31	15.67	37.92	20.24	18.66	15.27	21.12	34.05	17.49
Merged-chr5-43393411-2	chr5	43392897	43393897	+	751.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122172.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	2.29	6.91	3.7	7.42	4.67	11.25	12.67	7.07	7.49
Merged-chr16-4936293-3	chr16	4935761	4936761	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037666, intron 2 of 2)	intron (NR_037666, intron 2 of 2)	-2850.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	31.46	22.12	53.65	30.36	27.52	63.5	23.24	28.3	28.1
Merged-chr1-170967696-3	chr1	170967202	170968202	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077189, intron 3 of 7)	intron (NM_001077189, intron 3 of 7)	8369.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	13.16	13.82	11.1	16.19	12.13	15.27	6.34	3.54	8.74
Merged-chr12-17238999-1	chr12	17238499	17239499	+	751.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27596.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	6.29	0.92	0.92	3.37	0.47	0.8	3.17	1.33	6.25
Merged-chr6-99096213-3	chr6	99095724	99096724	+	751.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67926.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	12.01	18.89	22.2	18.22	22.86	12.06	15.84	15.03	11.24
Merged-chr6-43623647-2	chr6	43623132	43624132	+	751.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	Lx7|LINE|L1	42646.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	14.3	12.44	5.55	14.17	12.6	5.63	9.51	7.96	11.24
Merged-chr5-118615681-2	chr5	118615195	118616195	+	751.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54976.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	11.44	5.07	3.7	6.75	7.93	11.25	6.34	3.1	5.0
Merged-chr15-102234108-3	chr15	102233613	102234613	+	751.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011244)	TTS (NM_011244)	-2178.0	NM_013566	16421.0	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	30.89	35.94	39.77	13.49	7.46	14.47	28.52	18.57	29.98
Merged-chr2-157142170-3	chr2	157141672	157142672	+	751.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-6950.0	NM_018851	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	25.17	27.19	9.25	26.99	14.0	12.86	19.01	22.55	22.48
Merged-chr18-69299832-3	chr18	69299320	69300320	+	751.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44672.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	20.59	19.35	16.65	14.17	12.13	6.43	15.84	11.5	5.62
Merged-chr10-82935181-3	chr10	82934679	82935679	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50318.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	2.29	6.91	4.62	5.4	2.8	4.02	5.28	5.31	0.62
Merged-chr13-50949684-3	chr13	50949199	50950199	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151028.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.57	2.76	3.7	6.75	0.47	0.0	2.11	1.33	0.0
Merged-chr1-160234053-3	chr1	160233554	160234554	+	751.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038621, intron 6 of 8)	intron (NM_001038621, intron 6 of 8)	-21162.0	NM_009786	12301.0	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	25.17	29.95	27.75	59.38	64.84	53.85	8.45	7.96	21.23
Merged-chr1-125439403-2	chr1	125438887	125439887	+	751.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3660.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	13.73	25.34	13.87	22.94	18.66	27.33	25.35	25.2	25.61
Merged-chr11-86487106-3	chr11	86486602	86487602	+	751.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029788, intron 3 of 8)	intron (NM_029788, intron 3 of 8)	2445.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	22.31	19.35	28.67	24.29	18.66	24.92	22.18	13.27	15.61
Merged-chr2-127890784-3	chr2	127890290	127891290	+	751.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	36162.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	3.43	2.76	1.85	4.72	2.8	3.22	4.22	3.1	2.5
Merged-chr4-34429727-2	chr4	34429274	34430274	+	751.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120841.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	24.03	18.43	3.7	14.84	15.86	11.25	7.39	8.84	7.49
Merged-chr1-120293976-3	chr1	120293485	120294485	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-22903.0	NM_001085409	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.72	3.23	7.4	10.8	4.67	12.86	13.73	9.73	6.87
Merged-chr14-8985601-3	chr14	8985099	8986099	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	319209.0	NR_045968	74859.0	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	9.72	8.29	6.47	6.75	12.13	4.82	4.22	8.4	1.25
Merged-chr15-25675240-2	chr15	25674742	25675742	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	52692.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	1.72	6.91	6.47	1.35	1.4	7.23	6.34	0.44	1.25
Merged-chr6-108326592-1	chr6	108326092	108327092	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	113496.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.29	8.75	16.65	8.1	11.2	9.65	2.11	3.98	7.49
Merged-chr15-58622576-1	chr15	58622076	58623076	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	200851.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	24.03	21.2	14.8	39.13	21.46	16.88	27.46	30.51	13.74
Merged-chr1-191559985-2	chr1	191559482	191560482	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305233, intron 8 of 15)	intron (NM_001305233, intron 8 of 15)	15562.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	2.86	6.45	5.55	6.07	4.67	7.23	9.51	4.86	9.99
Merged-chr16-11743831-1	chr16	11743331	11744331	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028964, intron 20 of 20)	intron (NM_028964, intron 20 of 20)	-35871.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	1.72	4.61	9.25	3.37	0.93	3.22	3.17	1.77	3.75
Merged-chr1-72117931-1	chr1	72117431	72118431	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94376.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.0	0.92	0.0	8.77	11.66	3.22	11.62	3.98	3.12
Merged-chr1-151657284-1	chr1	151656784	151657784	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	85911.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	9.72	9.22	12.95	10.8	7.0	24.92	11.62	7.52	7.49
Merged-chr11-28440045-1	chr11	28439545	28440545	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181577, intron 2 of 4)	intron (NM_181577, intron 2 of 4)	144279.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	1.14	3.69	2.77	0.0	1.87	5.63	1.06	3.98	4.37
Merged-chr11-115049436-3	chr11	115048928	115049928	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1133.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	61.78	58.98	39.77	47.9	44.32	40.19	26.4	38.03	18.74
Merged-chr4-43630322-1	chr4	43629822	43630822	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1613.0	NM_001355466	230103.0	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	7.44	2.3	3.7	10.12	2.33	1.61	2.11	3.54	5.0
Merged-chr8-14652903-1	chr8	14652403	14653403	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-235633.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.0	3.23	1.85	4.72	2.8	4.82	21.12	10.61	1.25
Merged-chr2-60809605-3	chr2	60809140	60810140	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	71798.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	54.92	58.06	37.92	75.57	74.64	122.18	50.7	33.16	30.6
Merged-chr10-44698775-1	chr10	44698275	44699275	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240027.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	13.73	10.14	18.5	10.8	11.66	22.51	25.35	20.78	4.37
Merged-chr13-21995659-1	chr13	21995159	21996159	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14082.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	6.86	5.07	1.85	4.72	2.33	0.0	2.11	0.88	2.5
Merged-chr1-45922502-1	chr1	45922002	45923002	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 2 of 7)	URR1B|DNA|hAT-Charlie	3092.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	69.79	209.2	56.42	117.4	167.94	122.98	230.25	244.96	57.46
Merged-chr3-123065678-1	chr3	123065178	123066178	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30691.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	4.58	2.3	3.7	2.02	0.93	5.63	8.45	3.98	13.74
Merged-chr15-100422176-1	chr15	100421676	100422676	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	intron (NM_008732, intron 1 of 16)	879.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	295.75	281.08	171.12	234.13	203.4	108.51	268.27	259.99	140.52
Merged-chr10-25131031-1	chr10	25130531	25131531	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69139.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	10.3	7.83	7.4	6.75	9.33	11.25	11.62	3.98	6.25
Merged-chr4-129059245-3	chr4	129058690	129059690	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	919.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	175.62	168.65	132.27	109.3	98.43	103.69	143.64	174.66	71.2
Merged-chr2-127339081-1	chr2	127338581	127339581	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010090)	TTS (NM_010090)	442.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	7.44	1.84	5.55	8.1	3.27	4.82	1.06	5.75	3.75
Merged-chr1-72027134-1	chr1	72026634	72027634	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21939.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	2.29	2.3	0.92	2.7	6.53	0.8	3.17	2.65	2.5
Merged-chr7-16257481-1	chr7	16256981	16257981	+	751.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173550, intron 1 of 1)	B2_Mm2|SINE|B2	1857.0	NM_001173550	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	140.73	158.05	183.14	141.02	108.7	157.54	72.88	99.05	85.56
Merged-chrX-12547224-1	chrX	12546724	12547724	+	751.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40535.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.57	3.23	1.85	3.37	1.87	0.0	0.0	0.44	3.75
Merged-chr13-113970964-1	chr13	113970464	113971464	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	176456.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.58	2.76	1.85	9.45	3.73	2.41	3.17	2.21	1.25
Merged-chr7-25315571-1	chr7	25315071	25316071	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183311, exon 15 of 15)	exon (NM_183311, exon 15 of 15)	-1593.0	NM_001160400	269878.0	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	8.01	2.3	1.85	2.7	0.93	0.0	3.17	0.0	3.75
Merged-chr8-41825096-1	chr8	41824596	41825596	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2171.0	NR_045497	69966.0	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.57	3.23	0.0	4.05	2.33	3.22	0.0	2.21	2.5
Merged-chr4-59816171-1	chr4	59815671	59816671	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	LTR33A|LTR|ERVL	10521.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	99.54	87.09	68.45	62.75	63.45	69.93	59.15	59.69	53.71
Merged-chr17-14921790-1	chr17	14921290	14922290	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175173, intron 8 of 24)	intron (NM_175173, intron 8 of 24)	21334.0	NM_175173	71682.0	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	2.86	2.76	1.85	8.1	1.4	3.22	0.0	3.98	3.75
Merged-chr17-62544390-2	chr17	62543904	62544904	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	336913.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	8.58	11.52	2.77	11.47	7.93	8.84	24.29	26.09	14.99
Merged-chrX-163869104-1	chrX	163868604	163869604	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39913.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	14.87	13.82	12.02	10.8	14.93	27.33	22.18	20.78	11.24
Merged-chr4-106301558-1	chr4	106301058	106302058	+	751.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14655.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	18.88	20.27	9.25	18.89	22.39	26.53	14.79	13.27	21.23
Merged-chr13-52252863-3	chr13	52252366	52253366	+	750.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	156125.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.72	4.15	3.7	4.05	0.93	4.02	3.17	0.88	2.5
Merged-chr2-70946956-3	chr2	70946498	70947498	+	750.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71376.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	15.45	12.44	19.42	10.8	8.4	4.82	11.62	6.19	12.49
Merged-chr4-41469311-3	chr4	41468819	41469819	+	750.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	4171.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	21.17	25.34	22.2	19.57	17.73	24.11	10.56	11.5	8.12
Merged-chr3-96223158-2	chr3	96222663	96223663	+	750.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178214, exon 1 of 1)	3' UTR (NM_178214, exon 1 of 1)	2091.0	NM_178214	319190.0	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	25.17	27.19	25.9	25.64	12.6	20.9	39.08	36.7	21.86
Merged-chr2-84895702-3	chr2	84895195	84896195	+	750.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9003.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	3.43	4.61	7.4	4.05	5.13	5.63	10.56	6.63	5.0
Merged-chr15-55306498-3	chr15	55305993	55306993	+	750.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1257.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.43	5.99	3.7	3.37	1.4	0.0	3.17	1.77	0.0
Merged-chr14-25660219-3	chr14	25659718	25660718	+	750.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 22 of 23)	intron (NM_183208, intron 22 of 23)	-33952.0	NM_134084	105675.0	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	4.0	4.15	19.42	14.84	2.8	4.02	5.28	0.88	2.5
Merged-chr11-76253314-2	chr11	76252826	76253826	+	750.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9590.0	NM_183263	67390.0	Mm.24886	NM_183263	ENSMUSG00000038046	Mrm3	4833420N02Rik|AI255153|HC90|Rnmtl1	mitochondrial rRNA methyltransferase 3	protein-coding	10.3	7.37	8.32	4.72	7.46	8.84	8.45	5.31	2.5
Merged-chr2-91237635-3	chr2	91237138	91238138	+	750.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028119)	promoter-TSS (NM_028119)	492.0	NR_015464	606735.0	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	48.05	76.95	68.45	67.47	50.38	77.97	63.37	64.11	58.71
Merged-chr8-83997811-3	chr8	83997282	83998282	+	750.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081415, exon 1 of 5)	exon (NM_001081415, exon 1 of 5)	110.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	12.01	20.74	25.9	26.31	12.6	27.33	29.57	14.59	28.1
Merged-chr3-55115034-3	chr3	55114544	55115544	+	750.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144987, intron 1 of 8)	intron (NM_001144987, intron 1 of 8)	2878.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	19.45	10.14	12.95	14.84	15.39	16.88	28.52	18.13	18.74
Merged-chr1-133118352-2	chr1	133117849	133118849	+	750.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12817.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.0	2.3	5.55	3.37	2.8	11.25	6.34	2.65	7.49
Merged-chr6-13684291-1	chr6	13683791	13684791	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-6325.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	2.29	5.07	7.4	3.37	6.06	3.22	4.22	2.65	7.49
Merged-chr2-49425779-2	chr2	49425275	49426275	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-25711.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	19.45	21.66	13.87	19.57	11.66	22.51	26.4	12.38	21.23
Merged-chr12-69333693-3	chr12	69333179	69334179	+	750.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025441, intron 16 of 32)	B3|SINE|B2	23497.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	22.88	21.66	34.22	14.84	15.39	15.27	21.12	32.72	14.36
Merged-chr4-5688280-1	chr4	5687780	5688780	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	-36032.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	3.43	2.76	7.4	2.02	2.8	9.65	4.22	2.21	5.0
Merged-chr9-59969490-1	chr9	59968990	59969990	+	750.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001040426, exon 18 of 18)	3' UTR (NM_001040426, exon 18 of 18)	18196.0	NM_001101600	665389.0	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	4.58	5.07	4.62	2.7	3.27	3.22	5.28	0.88	0.0
Merged-chr15-34456338-3	chr15	34455839	34456839	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173421, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3027.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	14.87	21.66	11.1	12.82	15.39	20.09	15.84	19.46	24.98
Merged-chr7-101427911-3	chr7	101427428	101428428	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	6237.0	NR_152192	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	3.43	1.38	0.0	4.05	3.73	4.02	0.0	1.77	0.0
Merged-chr7-25217846-3	chr7	25217313	25218313	+	750.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106015)	promoter-TSS (NR_106015)	-88.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	8.58	5.99	3.7	5.4	7.0	9.65	13.73	7.52	2.5
Merged-chr9-56259666-2	chr9	56259177	56260177	+	750.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98607.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	35.47	52.53	24.05	59.38	63.45	45.01	123.57	150.78	56.83
Merged-chr12-55016576-1	chr12	55016076	55017076	+	750.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30240.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	16.59	11.52	12.95	10.8	12.13	24.92	15.84	19.46	14.36
Merged-chr14-72710615-1	chr14	72710115	72711115	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207636)	promoter-TSS (NM_207636)	-612.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	100.68	93.54	82.32	99.86	92.84	114.14	96.11	88.88	59.33
Merged-chr1-135585247-1	chr1	135584747	135585747	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173437, exon 1 of 29)	exon (NM_173437, exon 1 of 29)	108.0	NM_173437	215690.0	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Gm38399|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	1.72	1.38	1.85	14.17	5.6	1.61	4.22	2.21	1.87
Merged-chr1-150496845-1	chr1	150496345	150497345	+	750.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-30680.0	NM_021400	96875.0	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	4.0	3.23	1.85	5.4	2.33	4.82	6.34	7.07	0.0
Merged-chr15-77830885-3	chr15	77830383	77831383	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	11292.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	14.87	14.28	24.97	19.57	10.26	18.49	10.56	9.73	14.99
Merged-chr5-62821034-3	chr5	62820552	62821552	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170705, intron 2 of 8)	intron (NM_001170705, intron 2 of 8)	7229.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	49.2	40.55	38.85	29.69	24.72	24.92	22.18	19.9	26.85
Merged-chr8-22934629-3	chr8	22934131	22935131	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 16 of 17)	intron (NM_001081149, intron 16 of 17)	-40205.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	15.45	15.21	9.25	26.99	18.66	21.7	10.56	4.42	7.49
Merged-chr8-125699780-3	chr8	125699272	125700272	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	29954.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	3.43	4.15	1.85	8.77	5.6	9.65	11.62	4.86	3.75
Merged-chr12-103065168-3	chr12	103064666	103065666	+	750.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 14 of 48)	intron (NM_001081017, intron 14 of 48)	116307.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	6.29	1.84	1.85	2.7	2.33	3.22	2.11	1.33	5.0
Merged-chr1-74303276-2	chr1	74302845	74303845	+	750.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027154, intron 1 of 11)	PB1D7|SINE|Alu	991.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	49.77	47.0	42.55	50.6	45.25	56.27	59.15	45.1	24.98
Merged-chr8-60887147-2	chr8	60886665	60887665	+	750.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3228.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	5.15	5.07	18.5	11.47	10.26	19.29	4.22	10.17	8.74
Merged-chr5-81078193-2	chr5	81077694	81078694	+	750.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	ORR1F|LTR|ERVL-MaLR	56601.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.86	4.15	0.0	4.72	3.73	1.61	2.11	2.65	1.25
Merged-chr18-38418162-3	chr18	38417663	38418663	+	750.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022996)	promoter-TSS (NM_022996)	-744.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	34.32	29.49	22.2	26.31	25.66	15.27	42.25	32.72	28.73
Merged-chrX-12969346-2	chrX	12968858	12969858	+	750.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-8515.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	1.14	2.3	0.0	4.72	4.2	3.22	4.22	2.21	6.25
Merged-chr19-47242442-2	chr19	47241952	47242952	+	750.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163480, intron 3 of 5)	intron (NM_001163480, intron 3 of 5)	13609.0	NM_001163480	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	8.01	2.3	12.95	4.05	5.6	3.22	15.84	15.48	18.74
Merged-chrX-102505359-3	chrX	102504765	102505765	+	750.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027382)	promoter-TSS (NM_027382)	-107.0	NM_027382	70315.0	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	26.31	20.27	11.1	16.19	20.99	17.68	31.69	32.28	26.85
Merged-chr12-51811961-2	chr12	51811460	51812460	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144788, intron 2 of 42)	intron (NM_144788, intron 2 of 42)	17576.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	18.31	20.27	18.5	19.57	11.2	16.88	26.4	17.24	13.12
Merged-chr9-110680875-2	chr9	110680385	110681385	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	RMER4B|LTR|ERVK	24382.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	10.87	15.67	22.2	12.14	5.6	12.86	22.18	15.03	9.37
Merged-chr9-95565649-1	chr9	95565149	95566149	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5832.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	112.69	143.76	105.44	108.63	101.23	83.59	163.71	179.96	101.17
Merged-chr12-84515736-1	chr12	84515236	84516236	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173756, intron 5 of 5)	intron (NM_173756, intron 5 of 5)	-54092.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	8.58	7.83	9.25	12.82	6.06	9.65	12.67	7.07	6.25
Merged-chr4-117132132-1	chr4	117131632	117132632	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313916, intron 5 of 14)	intron (NM_001313916, intron 5 of 14)	1831.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	10.3	6.91	3.7	9.45	4.67	4.82	6.34	10.61	14.99
Merged-chr13-23772750-2	chr13	23772249	23773249	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9081.0	NM_030609	80838.0	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	5.72	9.22	7.4	10.12	7.93	3.22	8.45	9.29	11.24
Merged-chr2-173300932-1	chr2	173300432	173301432	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24399.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	1.72	0.92	3.7	1.35	1.87	4.82	1.06	0.0	1.25
Merged-chr11-114893909-1	chr11	114893409	114894409	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347654, intron 2 of 6)	intron (NM_001347654, intron 2 of 6)	3868.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	40.62	39.63	51.8	48.58	35.92	58.68	42.25	66.33	34.35
Merged-chr2-165977017-2	chr2	165976545	165977545	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15592.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	24.6	24.42	12.95	33.74	20.53	34.56	41.19	52.18	46.22
Merged-chrX-142408533-1	chrX	142408033	142409033	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17998.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	8.58	15.21	17.57	15.52	9.33	12.86	13.73	8.84	7.49
Merged-chr17-25015346-2	chr17	25014816	25015816	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020608)	promoter-TSS (NM_020608)	-86.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	287.17	249.75	169.27	244.25	243.05	159.95	194.34	178.19	111.79
Merged-chr11-72697519-2	chr11	72697011	72698011	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	ORR1E|LTR|ERVL-MaLR	7509.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	24.03	28.11	21.27	34.41	11.2	41.8	12.67	24.32	14.99
Merged-chr12-102713362-1	chr12	102712862	102713862	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8493.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	26.31	19.35	16.65	21.59	15.86	38.58	30.63	16.36	33.1
Merged-chr3-37340151-2	chr3	37339665	37340665	+	750.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8488.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	4.58	2.3	3.7	1.35	5.13	8.04	4.22	1.77	3.75
Merged-chr19-10240080-2	chr19	10239589	10240589	+	750.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	659.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	2.86	1.84	5.55	5.4	1.87	3.22	5.28	0.44	2.5
Merged-chr2-52784136-3	chr2	52783641	52784641	+	750.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41992.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	4.58	6.91	1.85	4.72	1.87	1.61	2.11	1.77	1.25
Merged-chr9-50945003-3	chr9	50944499	50945499	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	Lx7|LINE|L1	64074.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	33.75	31.33	29.6	33.74	31.26	37.78	27.46	29.63	36.85
Merged-chrX-36989557-2	chrX	36989059	36990059	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_019942, exon 1 of 10)	5' UTR (NM_019942, exon 1 of 10)	136.0	NM_001177324	56526.0	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	1.72	4.15	1.85	6.07	4.67	1.61	3.17	0.0	0.0
Merged-chr1-144244472-2	chr1	144243998	144244998	+	750.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015811)	TTS (NM_015811)	4606.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	34.9	38.71	14.8	57.35	34.06	28.13	21.12	17.24	16.86
Merged-chr2-27761313-4	chr2	27760674	27761674	+	750.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	50591.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	78.94	65.89	74.0	69.5	55.51	84.4	55.98	63.67	64.33
Merged-chr15-80097673-3	chr15	80097190	80098190	+	750.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207708, intron 1 of 3)	intron (NM_207708, intron 1 of 3)	6356.0	NM_207708	20972.0	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	14.3	4.15	1.85	8.1	6.53	9.65	8.45	8.4	7.49
Merged-chr8-106063233-3	chr8	106062720	106063720	+	750.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 1 of 9)	(TG)n|Simple_repeat|Simple_repeat	3617.0	NM_010901	18021.0	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	30.32	24.42	29.6	22.27	12.6	12.86	26.4	20.78	18.11
Merged-chr16-10461393-3	chr16	10460896	10461896	+	750.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14034.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	4.0	4.61	1.85	4.05	3.27	1.61	12.67	1.33	6.25
Merged-chr8-123653772-3	chr8	123653270	123654270	+	750.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133955)	promoter-TSS (NM_133955)	-159.0	NM_133955	69581.0	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	4.58	0.92	1.85	0.67	1.4	0.0	3.17	0.0	2.5
Merged-chr7-44051394-2	chr7	44050905	44051905	+	750.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020268)	promoter-TSS (NM_020268)	-885.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	6.29	4.61	2.77	4.72	11.2	12.06	2.11	1.77	0.0
Merged-chr9-31131926-2	chr9	31131396	31132396	+	750.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011176)	promoter-TSS (NM_011176)	-97.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	2.86	0.92	6.47	9.45	3.27	11.25	8.45	3.1	4.37
Merged-chr12-81927975-2	chr12	81927451	81928451	+	750.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 6 of 35)	intron (NM_018814, intron 6 of 35)	67921.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	8.01	4.61	10.17	5.4	3.27	11.25	6.34	3.98	3.75
Merged-chr9-105122548-1	chr9	105122048	105123048	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9257.0	NM_029385	75686.0	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	67.5	77.41	46.25	116.05	84.44	104.49	29.57	49.52	29.35
Merged-chr3-146560617-1	chr3	146560117	146561117	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36532.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	9.72	3.23	5.55	7.42	1.87	1.61	2.11	3.54	0.0
Merged-chr7-74668404-3	chr7	74667914	74668914	+	750.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113634.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.0	10.14	11.1	3.37	3.27	8.04	8.45	6.19	13.12
Merged-chr15-12213793-1	chr15	12213293	12214293	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	8765.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	10.87	10.6	3.7	29.01	10.26	10.45	11.62	14.59	9.99
Merged-chr2-173229722-3	chr2	173229258	173230258	+	750.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022995, intron 2 of 3)	intron (NM_022995, intron 2 of 3)	-10836.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	1.14	2.76	0.0	7.42	1.87	1.61	6.34	0.88	5.0
Merged-chr9-57238372-1	chr9	57237872	57238872	+	750.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014398, intron 1 of 12)	B1F|SINE|Alu	1816.0	NM_001014398	541610.0	Mm.378036	NM_001014398	ENSMUSG00000070298	Trcg1	-	taste receptor cell gene 1	protein-coding	6.86	8.29	3.7	5.4	3.27	4.82	6.34	3.54	2.5
Merged-chr2-90612381-3	chr2	90611863	90612863	+	750.283325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31716.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	12.01	7.37	12.02	8.77	11.2	4.82	6.34	2.65	3.12
Merged-chr15-28189893-2	chr15	28189410	28190410	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13856.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	8.58	4.15	3.7	3.37	0.47	3.22	4.22	0.44	1.25
Merged-chr14-55101927-2	chr14	55101437	55102437	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007455, intron 14 of 21)	intron (NM_007455, intron 14 of 21)	4656.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	6.29	11.06	5.55	4.05	2.33	2.41	4.22	0.0	2.5
Merged-chr2-6178624-1	chr2	6178124	6179124	+	750.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14627.0	NR_040333	320132.0	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	1.72	0.92	1.85	4.05	4.2	6.43	3.17	0.88	3.75
Merged-chr6-88136333-3	chr6	88135834	88136834	+	750.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32076.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	3.43	1.38	3.7	2.02	0.47	1.61	2.11	0.44	1.25
Merged-chr7-96849148-2	chr7	96848643	96849643	+	750.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 22 of 32)	L1MA5A|LINE|L1	-47594.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	16.02	23.04	23.12	26.99	27.06	14.47	3.17	9.29	5.0
Merged-chr6-16943685-3	chr6	16943158	16944158	+	750.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45217.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	15.45	9.22	11.1	14.84	8.86	1.61	7.39	2.65	5.0
Merged-chr19-16046075-3	chr19	16045567	16046567	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60992.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	13.73	13.36	14.8	9.45	7.0	6.43	35.91	15.92	18.11
Merged-chr9-104569618-3	chr9	104569118	104570118	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028719, exon 1 of 16)	5' UTR (NM_028719, exon 1 of 16)	135.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	3.43	2.3	3.7	6.07	1.87	0.0	0.0	3.1	0.0
Merged-chr3-88677530-3	chr3	88677034	88678034	+	750.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-8253.0	NM_028814	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	5.72	5.07	1.85	9.45	4.2	0.0	3.17	5.75	2.5
Merged-chr3-105981114-2	chr3	105980614	105981614	+	750.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007696, intron 8 of 10)	intron (NM_007696, intron 8 of 10)	7312.0	NM_007696	12659.0	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	35.47	35.02	47.17	33.06	12.13	30.54	3.17	3.98	3.75
Merged-chr1-91056589-3	chr1	91056076	91057076	+	750.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	3132.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	38.33	47.92	26.82	22.94	17.73	12.06	25.35	19.46	11.24
Merged-chr5-139373014-2	chr5	139372519	139373519	+	750.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	-3274.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	124.71	87.55	64.75	124.82	79.77	93.24	128.85	127.34	66.2
Merged-chr5-125107518-3	chr5	125107004	125108004	+	750.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 5 of 46)	intron (NM_011424, intron 5 of 46)	71710.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	8.58	3.23	15.72	8.1	4.2	3.22	4.22	0.0	2.5
Merged-chr15-101859893-3	chr15	101859372	101860372	+	750.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001003667)	TTS (NM_001003667)	-9086.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	49.2	74.65	17.57	5.4	2.33	3.22	16.9	13.27	18.74
Merged-chr10-80161908-3	chr10	80161415	80162415	+	750.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-5924.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	57.21	54.37	60.12	71.52	44.78	73.14	57.03	62.79	63.7
Merged-chr7-35150149-2	chr7	35149657	35150657	+	750.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30864.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	21.74	13.82	17.57	20.92	6.06	17.68	10.56	7.07	9.37
Merged-chr2-117121787-3	chr2	117121307	117122307	+	750.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	CpG	736.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	168.18	152.52	163.72	186.22	106.83	160.76	180.61	125.13	113.04
Merged-chr17-78936514-1	chr17	78936014	78937014	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	556.0	NM_001024806	12607.0	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	132.14	162.2	73.07	102.56	157.21	99.67	139.42	175.54	63.08
Merged-chr10-44669126-1	chr10	44668626	44669626	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-210378.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	18.31	21.2	17.57	11.47	16.33	33.76	14.79	14.59	19.36
Merged-chr19-15815398-2	chr19	15814900	15815900	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109222.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	8.58	5.99	11.1	10.8	2.8	4.02	6.34	2.21	6.25
Merged-chr10-26833604-1	chr10	26833104	26834104	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	61092.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.86	5.99	5.55	4.72	2.8	3.22	3.17	3.98	4.37
Merged-chr17-28511257-2	chr17	28510754	28511754	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19607.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	35.47	29.95	24.05	48.58	24.72	18.49	21.12	17.24	19.98
Merged-chr18-24654472-3	chr18	24653912	24654912	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026779, intron 1 of 14)	intron (NM_026779, intron 1 of 14)	721.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	40.62	40.55	30.52	46.56	68.58	61.89	31.69	40.68	14.36
Merged-chr11-98972326-1	chr11	98971826	98972826	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361954, intron 6 of 7)	intron (NM_001361954, intron 6 of 7)	7454.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	4.58	3.23	10.17	2.02	4.2	4.82	2.11	0.44	6.25
Merged-chr7-43944927-1	chr7	43944427	43945427	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033120)	promoter-TSS (NR_033120)	-85.0	NR_033120	16604.0	Mm.195787	NR_033120	ENSMUSG00000060161	Klk1b7-ps	1700127D06Rik|Klk-ps2|mGK-7	kallikrein 1-related peptidase b7, pseudogene	pseudo	2.29	3.69	1.85	0.0	0.93	0.0	5.28	4.86	5.0
Merged-chr7-27860083-1	chr7	27859583	27860583	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024726)	promoter-TSS (NM_001024726)	-502.0	NM_001024726	545938.0	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	39.47	54.83	50.87	35.76	47.58	70.73	68.65	46.87	49.96
Merged-chrX-140955736-2	chrX	140955251	140956251	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164177, intron 1 of 4)	intron (NM_001164177, intron 1 of 4)	960.0	NM_016883	53380.0	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	11.44	16.13	8.32	9.45	13.53	6.43	32.74	18.13	6.25
Merged-chr2-48950364-1	chr2	48949864	48950864	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355296)	promoter-TSS (NM_001355296)	-130.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	53.77	41.01	54.57	56.0	37.32	53.05	71.82	55.27	65.58
Merged-chr4-145025336-1	chr4	145024836	145025836	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	132199.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	16.02	15.67	28.67	24.96	18.19	33.76	7.39	5.75	8.74
Merged-chr15-80024830-1	chr15	80024330	80025330	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10022.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	24.03	11.98	18.5	28.34	12.13	16.08	3.17	2.65	0.0
Merged-chr8-72005997-2	chr8	72005492	72006492	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024444, intron 2 of 12)	intron (NM_024444, intron 2 of 12)	3634.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	9.72	12.9	18.5	6.75	3.27	8.84	10.56	10.17	11.87
Merged-chr15-66098423-1	chr15	66097923	66098923	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	L1M4|LINE|L1	-121619.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	4.0	5.07	0.0	13.49	4.2	3.22	3.17	1.77	2.5
Merged-chr19-55332816-2	chr19	55332320	55333320	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	16763.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	1.72	2.3	5.55	2.02	1.87	0.0	2.11	0.44	2.5
Merged-chr5-111141177-2	chr5	111140637	111141637	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	136993.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	117.84	123.95	118.39	106.61	134.82	57.07	100.34	114.52	43.09
Merged-chr3-35948411-1	chr3	35947911	35948911	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	-15445.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.15	5.07	0.0	3.37	5.6	4.82	3.17	6.63	2.5
Merged-chr5-43662645-1	chr5	43662145	43663145	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359906, intron 1 of 37)	intron (NM_001359906, intron 1 of 37)	266.0	NM_001359903	231214.0	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	11.44	1.84	13.87	13.49	20.53	20.9	2.11	4.42	3.75
Merged-chr15-4727828-1	chr15	4727328	4728328	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	618.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	44.62	96.76	38.85	116.05	128.29	118.16	163.71	181.73	73.07
Merged-chr5-134343176-1	chr5	134342676	134343676	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	16722.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	28.03	25.34	14.8	21.59	23.79	20.09	28.52	25.2	16.86
Merged-chr13-94387063-1	chr13	94386563	94387563	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 1 of 26)	L1MD2|LINE|L1	28103.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	4.58	3.23	9.25	12.14	6.06	5.63	9.51	10.61	12.49
Merged-chr5-143634841-2	chr5	143634337	143635337	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	12390.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	17.16	17.05	12.95	14.84	16.33	6.43	16.9	10.17	5.0
Merged-chr2-52673361-1	chr2	52672861	52673861	+	750.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	ORR1F|LTR|ERVL-MaLR	2498.0	NM_001285428	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	3.43	1.38	1.85	0.67	1.4	4.82	2.11	4.42	0.0
Merged-chr6-122756061-1	chr6	122755561	122756561	+	750.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13316.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	4.0	1.84	2.77	2.02	1.4	0.0	4.22	3.54	2.5
Merged-chr14-55094928-2	chr14	55094411	55095411	+	750.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153083, exon 1 of 2)	5' UTR (NM_153083, exon 1 of 2)	127.0	NM_153083	105663.0	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	74.94	75.57	39.77	77.59	82.11	81.99	73.93	75.17	74.94
Merged-chr15-64222800-3	chr15	64222293	64223293	+	749.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	PB1D11|SINE|Alu	89880.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	12.01	19.35	22.2	11.47	13.53	12.06	13.73	12.38	7.49
Merged-chr12-111427909-3	chr12	111427408	111428408	+	749.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	10463.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	16.59	8.75	19.42	11.47	4.67	9.65	23.24	9.73	13.12
Merged-chr7-75702741-4	chr7	75702360	75703360	+	749.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 16 of 36)	MIRb|SINE|MIR	-145478.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	102.4	127.64	93.42	90.41	68.11	70.73	98.23	107.45	63.7
Merged-chr8-40926174-2	chr8	40925683	40926683	+	749.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026840)	promoter-TSS (NM_026840)	-50.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	4.0	2.3	1.85	4.05	5.6	6.43	12.67	15.03	13.74
Merged-chr8-70654330-3	chr8	70653835	70654835	+	749.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 2 of 4)	intron (NM_023217, intron 2 of 4)	5403.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	28.6	30.41	11.1	22.27	14.93	24.11	22.18	18.13	8.12
Merged-chr11-77622168-3	chr11	77621673	77622673	+	749.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14358.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	4.58	3.23	3.7	5.4	6.06	4.82	4.22	2.21	1.25
Merged-chr11-61659197-2	chr11	61658691	61659691	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027817, intron 1 of 4)	intron (NM_027817, intron 1 of 4)	5870.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	8.58	6.45	14.8	5.4	7.0	12.86	10.56	8.4	12.49
Merged-chr15-102381770-2	chr15	102381264	102382264	+	749.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14796.0	NM_001348205	170574.0	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	6.86	2.3	1.85	4.72	2.33	3.22	3.17	0.44	1.25
Merged-chr2-28619091-2	chr2	28618593	28619593	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160406, intron 1 of 6)	intron (NM_001160406, intron 1 of 6)	2889.0	NM_008114	14582.0	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	1.72	1.84	1.85	5.4	4.67	1.61	1.06	3.1	1.25
Merged-chr18-61377877-2	chr18	61377380	61378380	+	749.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	20020.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	5.15	2.76	6.47	5.4	1.4	2.41	8.45	5.31	3.75
Merged-chr1-164681810-3	chr1	164681323	164682323	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114840.0	NM_019759	56429.0	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	9.72	3.69	4.62	4.72	9.8	0.0	4.22	7.52	8.74
Merged-chrX-166718292-3	chrX	166717798	166718798	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56273.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	2.86	4.61	0.0	3.37	1.87	0.0	11.62	3.54	3.75
Merged-chr11-101464469-3	chr11	101463958	101464958	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012037, intron 1 of 5)	intron (NM_012037, intron 1 of 5)	1741.0	NM_012037	26949.0	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	54.92	46.08	37.92	89.06	84.44	59.48	62.31	42.01	16.24
Merged-chr1-138131327-3	chr1	138130770	138131770	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	43856.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	22.88	21.66	35.15	27.66	27.99	24.92	35.91	30.51	16.24
Merged-chr14-30591591-3	chr14	30591045	30592045	+	749.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18765.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	18.88	6.45	5.55	18.89	2.33	5.63	29.57	24.76	19.98
Merged-chr19-14506912-1	chr19	14506412	14507412	+	749.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302951, intron 8 of 19)	intron (NM_001302951, intron 8 of 19)	-68406.0	NR_003027	19862.0		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	5.15	11.98	18.5	3.37	6.06	12.86	10.56	3.98	8.74
Merged-chr3-36771779-3	chr3	36771282	36772282	+	749.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-81615.0	NM_019510	22065.0	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	12.59	20.74	26.82	16.87	20.06	20.09	16.9	14.59	16.86
Merged-chr17-57098478-3	chr17	57097997	57098997	+	749.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	intron (NR_033508, intron 3 of 3)	-6888.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	1.72	5.99	3.7	12.82	4.2	6.43	9.51	7.52	5.0
Merged-chr7-24954559-3	chr7	24954048	24955048	+	749.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15527.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	1.72	0.46	3.7	0.0	0.47	0.0	6.34	0.88	5.62
Merged-chr6-124790270-1	chr6	124789770	124790770	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-10543.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	2.29	6.45	8.32	5.4	5.13	8.04	4.22	1.77	9.37
Merged-chr15-8589875-2	chr15	8589367	8590367	+	749.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	120940.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.29	2.76	1.85	4.05	4.2	4.82	0.0	0.88	3.75
Merged-chr9-65549302-2	chr9	65548798	65549798	+	749.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30789.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	87.52	65.89	87.87	62.07	39.65	58.68	32.74	31.39	29.98
Merged-chr1-23466356-2	chr1	23465861	23466861	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83186.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	22.88	24.88	17.57	19.57	26.59	14.47	25.35	21.22	21.23
Merged-chr3-117438966-2	chr3	117438471	117439471	+	749.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78095.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	5.72	2.3	0.0	4.72	2.8	1.61	0.0	2.65	3.12
Merged-chr12-110454357-3	chr12	110453868	110454868	+	749.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 2 of 13)	intron (NM_001135001, intron 2 of 13)	7189.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.0	3.23	5.55	6.07	1.87	11.25	1.06	2.65	6.25
Merged-chr11-116095722-3	chr11	116095241	116096241	+	749.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8746.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	91.53	67.74	55.5	74.89	41.99	53.05	43.3	90.2	56.83
Merged-chr17-27909807-3	chr17	27909317	27910317	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026836)	promoter-TSS (NM_026836)	511.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	363.83	407.79	360.73	345.46	264.51	241.94	299.96	292.27	194.85
Merged-chr3-13471686-3	chr3	13471183	13472183	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178631)	promoter-TSS (NM_178631)	28.0	NM_001357035	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.0	1.38	0.0	2.7	1.4	2.41	9.51	1.33	1.25
Merged-chr15-73147930-3	chr15	73147434	73148434	+	749.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	37013.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	84.09	58.52	47.17	78.27	50.38	25.72	61.26	44.22	36.85
Merged-chr1-64088915-1	chr1	64088415	64089415	+	749.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	32474.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	9.72	14.75	6.47	12.82	5.6	12.86	9.51	4.86	6.25
Merged-chr1-128597459-2	chr1	128596953	128597953	+	749.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5154.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	7.44	6.91	2.77	4.72	2.33	0.0	1.06	2.65	3.75
Merged-chr3-87527329-2	chr3	87526828	87527828	+	749.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359750, intron 2 of 4)	intron (NM_001359750, intron 2 of 4)	1750.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	35.47	17.05	16.65	39.81	12.6	8.04	8.45	5.31	6.25
Merged-chr1-52703299-2	chr1	52702796	52703796	+	749.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357464, intron 2 of 7)	intron (NM_001357464, intron 2 of 7)	24022.0	NM_178081	98682.0	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	1.72	1.84	0.92	5.4	5.13	0.8	4.22	1.77	2.5
Merged-chr15-99394239-3	chr15	99393739	99394739	+	749.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	1020.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	156.17	188.46	120.24	156.53	99.83	83.59	170.05	204.28	104.92
Merged-chr8-33271958-2	chr8	33271454	33272454	+	749.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011721, intron 23 of 33)	intron (NM_011721, intron 23 of 33)	113573.0	NM_001122822	22427.0	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome RecQ like helicase	protein-coding	4.0	5.53	6.47	4.72	7.46	4.02	4.22	2.65	10.62
Merged-chr9-85368544-3	chr9	85368042	85369042	+	749.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41392.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	24.6	32.72	24.05	22.94	20.53	24.92	13.73	16.8	11.24
Merged-chr17-26467723-1	chr17	26467223	26468223	+	749.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40749.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	4.58	11.06	1.85	24.96	15.39	15.27	10.56	7.52	14.36
Merged-chr13-94838286-2	chr13	94837793	94838793	+	749.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009321, intron 3 of 3)	intron (NM_009321, intron 3 of 3)	-37334.0	NM_011021	18420.0	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	6.29	7.37	1.85	12.14	7.0	6.43	6.34	11.94	7.49
Merged-chr5-121124454-3	chr5	121123976	121124976	+	749.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	66921.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	4.0	4.61	6.47	3.37	1.4	4.82	13.73	9.29	6.87
Merged-chr4-129036007-5	chr4	129035452	129036452	+	749.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-22319.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	96.11	80.64	116.54	84.34	46.18	98.87	72.88	87.99	64.95
Merged-chr14-87215290-3	chr14	87214797	87215797	+	749.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74073.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	1.72	2.76	4.62	1.35	1.87	4.82	2.11	1.77	0.0
Merged-chr19-34340535-2	chr19	34340040	34341040	+	749.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	49881.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	4.58	4.15	3.7	5.4	7.93	6.43	1.06	1.77	3.75
Merged-chr7-105750846-2	chr7	105750306	105751306	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009906, intron 3 of 12)	intron (NM_009906, intron 3 of 12)	1429.0	NM_009906	12751.0	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	20.02	19.81	18.5	28.34	27.06	5.63	24.29	12.38	14.99
Merged-chr4-144980282-1	chr4	144979782	144980782	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	87145.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	9.72	7.83	0.0	24.29	7.46	8.84	19.01	7.07	3.75
Merged-chr12-51844221-1	chr12	51843721	51844721	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14685.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	54.35	86.17	51.8	85.01	90.97	49.03	36.97	45.54	16.86
Merged-chr4-59534037-3	chr4	59533541	59534541	+	749.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	intron (NM_178164, intron 1 of 13)	15323.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	42.9	58.98	44.4	31.71	35.45	46.62	58.09	35.37	30.6
Merged-chr4-144894429-1	chr4	144893929	144894929	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	1292.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	43.48	49.3	37.92	64.1	76.51	60.28	81.33	63.23	41.84
Merged-chr7-101033530-1	chr7	101033030	101034030	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-21477.0	NM_001302346	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	12.01	4.61	3.7	14.17	9.8	15.27	9.51	1.33	0.0
Merged-chr3-51718151-1	chr3	51717651	51718651	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	56972.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	22.31	22.58	25.9	13.49	10.26	18.49	20.07	8.4	5.62
Merged-chr10-39427098-2	chr10	39426669	39427669	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	57370.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	12.01	10.6	17.57	17.54	9.8	22.51	17.96	13.27	13.12
Merged-chr13-75825118-1	chr13	75824618	75825618	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14767.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	13.73	12.44	14.8	16.87	15.86	20.09	17.96	7.52	13.12
Merged-chr18-61106787-2	chr18	61106325	61107325	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1253.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	117.27	176.48	167.42	117.4	132.02	157.54	218.63	232.14	155.51
Merged-chr12-80918024-2	chr12	80917533	80918533	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6414.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	5.15	2.76	0.0	8.77	1.87	4.82	3.17	1.33	4.37
Merged-chr2-27759957-1	chr2	27759457	27760457	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49374.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	30.89	37.78	32.37	35.09	30.79	28.94	27.46	23.88	41.22
Merged-chr15-82346846-2	chr15	82346341	82347341	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026914, intron 1 of 2)	intron (NM_026914, intron 1 of 2)	795.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	108.69	134.55	158.17	101.88	90.97	119.76	118.29	147.24	118.66
Merged-chr7-120868480-1	chr7	120867980	120868980	+	749.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	PB1D11|SINE|Alu	17291.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	24.6	23.96	34.22	5.4	6.06	10.45	1.06	5.75	1.25
Merged-chr2-11254122-1	chr2	11253622	11254622	+	749.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008859, intron 9 of 17)	intron (NM_008859, intron 9 of 17)	81740.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	8.01	2.76	2.77	6.07	5.6	0.0	3.17	3.1	2.5
Merged-chr4-139205986-3	chr4	139205486	139206486	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	B3A|SINE|B2	11875.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	61.78	43.31	29.6	37.11	25.19	29.74	92.94	71.63	46.22
Merged-chr4-135179293-3	chr4	135178766	135179766	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58621.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	17.73	10.14	7.4	8.1	6.53	3.22	3.17	1.77	2.5
Merged-chr19-55577585-3	chr19	55577070	55578070	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360432)	TTS (NM_001360432)	124634.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	16.59	13.36	12.02	31.04	14.0	19.29	17.96	15.03	18.11
Merged-chr5-66081184-3	chr5	66080663	66081663	+	749.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	17016.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	30.32	39.17	29.6	39.81	32.66	32.96	46.47	45.54	38.1
Merged-chr6-146676406-2	chr6	146675903	146676903	+	749.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19185.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	18.31	14.28	9.25	29.01	22.86	30.54	12.67	22.55	16.24
Merged-chr4-98189119-2	chr4	98188603	98189603	+	749.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	194162.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.57	4.61	0.0	4.05	5.13	0.0	1.06	4.86	1.25
Merged-chr11-62846048-3	chr11	62845558	62846558	+	749.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1065.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	11.44	12.44	9.25	4.72	4.67	3.22	4.22	7.07	7.49
Merged-chr7-92884566-3	chr7	92884065	92885065	+	749.399963	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	intron (NM_028243, intron 1 of 8)	9312.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	56.63	62.67	73.07	52.63	49.92	35.37	57.03	92.86	38.1
Merged-chr17-84203338-2	chr17	84202825	84203825	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-15378.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	12.59	14.28	22.2	24.29	14.93	12.06	7.39	10.61	3.12
Merged-chr11-60305777-2	chr11	60305272	60306272	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	47133.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	12.01	12.44	5.55	6.07	10.26	6.43	14.79	5.31	11.24
Merged-chr11-78277493-2	chr11	78276981	78277981	+	749.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-13360.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	22.31	37.32	51.8	26.99	34.52	40.19	30.63	41.56	24.36
Merged-chr4-134923024-3	chr4	134922519	134923519	+	749.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023665)	promoter-TSS (NM_023665)	-606.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	316.92	277.39	213.66	253.02	190.8	181.66	269.33	339.58	163.63
Merged-chr2-180227784-3	chr2	180227231	180228231	+	749.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1872.0	NM_001081171	16776.0	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	4.0	4.15	0.0	5.4	2.33	1.61	2.11	0.0	2.5
Merged-chr8-33601914-2	chr8	33601422	33602422	+	749.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	intron (NM_017374, intron 1 of 6)	2301.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	4.58	3.69	8.32	6.75	4.2	11.25	17.96	19.46	21.23
Merged-chr19-53800219-1	chr19	53799719	53800719	+	749.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-92012.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	4.58	2.3	0.0	1.35	0.93	7.23	9.51	4.42	1.25
Merged-chr5-74252846-1	chr5	74252346	74253346	+	749.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	57520.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	1.72	5.07	7.4	6.75	9.8	6.43	4.22	3.1	0.0
Merged-chr9-65364371-2	chr9	65363865	65364865	+	749.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111145, intron 1 of 6)	intron (NM_001111145, intron 1 of 6)	3305.0	NM_001111145	208080.0	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	11.44	8.75	7.4	26.99	20.53	16.88	2.11	4.86	5.0
Merged-chr2-38286651-2	chr2	38286132	38287132	+	749.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 1 of 21)	intron (NM_146122, intron 1 of 21)	752.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	145.87	170.03	148.92	266.51	311.16	245.96	232.36	234.79	111.79
Merged-chr6-116014333-2	chr6	116013841	116014841	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19336.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	29.17	35.02	48.1	48.58	34.06	40.19	48.58	29.63	34.97
Merged-chr13-89385822-2	chr13	89385311	89386311	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-154825.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	16.59	12.44	9.25	14.84	12.6	4.02	31.69	30.95	19.98
Merged-chr18-9494038-2	chr18	9493520	9494520	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43866.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	30.32	12.9	7.4	53.98	41.52	14.47	42.25	27.41	3.12
Merged-chr19-61198716-2	chr19	61198226	61199226	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-22417.0	NM_001177513	633057.0	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	2.86	2.76	0.0	2.02	4.2	8.84	1.06	0.44	0.62
Merged-chr9-32725303-2	chr9	32724809	32725809	+	749.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	29267.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.58	6.91	0.0	6.75	8.86	6.43	8.45	1.33	5.0
Merged-chr13-45600688-2	chr13	45600180	45601180	+	749.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	ORR1F|LTR|ERVL-MaLR	93236.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	6.86	5.07	13.87	14.17	5.13	9.65	11.62	5.31	12.49
Merged-chr16-89773991-3	chr16	89773493	89774493	+	749.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44359.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.15	4.61	1.85	2.02	4.67	3.22	4.22	3.54	4.37
Merged-chr14-109478431-2	chr14	109477922	109478922	+	749.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR80A|LTR|ERVL	-564183.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	2.86	3.23	5.55	4.05	5.6	4.02	2.11	3.54	6.87
Merged-chr14-40894777-3	chr14	40894299	40895299	+	749.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1834.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.57	3.23	5.55	0.67	2.33	6.43	2.11	2.65	2.5
Merged-chr3-127498869-3	chr3	127498393	127499393	+	749.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001327938, exon 1 of 48)	5' UTR (NM_001327938, exon 1 of 48)	222.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.86	0.92	3.7	6.07	4.67	4.82	116.18	108.77	41.22
Merged-chr2-104816239-4	chr2	104815532	104816532	+	749.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123327, intron 1 of 11)	intron (NM_001123327, intron 1 of 11)	664.0	NM_001123327	99003.0	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	48.05	38.71	49.02	56.0	30.79	40.99	31.69	24.32	27.48
Merged-chr13-95481605-2	chr13	95481125	95482125	+	749.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.43	0.46	1.85	2.02	0.0	0.0	1.06	3.1	6.87
Merged-chr2-30246033-2	chr2	30245536	30246536	+	749.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8267.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	50.91	40.55	33.3	61.4	53.18	40.19	124.63	87.11	21.23
Merged-chr18-3890085-3	chr18	3889583	3890583	+	749.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-275749.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.0	5.07	8.32	1.35	1.87	1.61	5.28	3.98	10.62
Merged-chr11-48855647-3	chr11	48855128	48856128	+	749.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	15792.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	44.05	66.35	59.2	41.83	41.99	38.58	40.14	44.66	22.48
Merged-chr14-63129838-2	chr14	63129366	63130366	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7404.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	404.44	450.65	265.46	430.47	494.97	331.16	420.36	563.76	248.56
Merged-chr7-38074025-2	chr7	38073532	38074532	+	749.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33458.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.29	1.84	5.55	2.02	0.93	1.61	1.06	0.0	4.37
Merged-chrX-13720577-2	chrX	13720088	13721088	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	intron (NR_037311, intron 1 of 4)	735.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	7.44	10.6	7.4	18.22	9.8	17.68	11.62	10.17	8.74
Merged-chr7-144932927-2	chr7	144932439	144933439	+	749.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 4 of 4)	intron (NM_007631, intron 4 of 4)	6986.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	42.9	43.31	40.7	33.74	35.92	51.44	25.35	24.76	26.23
Merged-chr17-42837319-2	chr17	42836824	42837824	+	749.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009847, intron 4 of 17)	intron (NM_009847, intron 4 of 17)	39100.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	20.02	23.96	24.05	15.52	17.26	14.47	34.85	24.76	21.23
Merged-chr7-90060093-3	chr7	90059593	90060593	+	749.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30934.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	12.59	19.81	17.57	26.31	25.66	20.9	40.14	24.32	22.48
Merged-chr2-92455887-3	chr2	92455357	92456357	+	749.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211358, intron 1 of 1)	intron (NM_211358, intron 1 of 1)	3937.0	NM_211358	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	12.59	11.52	12.95	17.54	8.86	20.09	10.56	10.17	10.62
Merged-chr17-46523258-3	chr17	46522733	46523733	+	749.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081335, intron 17 of 40)	intron (NM_001081335, intron 17 of 40)	23155.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	54.35	38.71	74.0	45.88	33.59	53.05	47.53	45.99	41.22
Merged-chr6-49258011-2	chr6	49257519	49258519	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	6033.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	18.31	17.51	12.02	7.42	2.33	8.04	29.57	26.09	24.98
Merged-chr8-119813648-1	chr8	119813148	119814148	+	749.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	RSINE1|SINE|B4	26931.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	100.68	77.41	70.3	98.51	70.91	89.22	111.96	101.26	58.08
Merged-chr4-95637271-1	chr4	95636771	95637771	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029347, intron 5 of 10)	intron (NM_029347, intron 5 of 10)	57850.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	1.14	0.46	3.7	4.05	1.4	12.06	2.11	2.21	3.12
Merged-chr2-90573607-1	chr2	90573107	90574107	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	7040.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	120.13	123.49	91.57	131.57	94.23	87.61	120.41	138.84	118.66
Merged-chr10-117807676-2	chr10	117807168	117808168	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-14963.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	13.16	8.29	3.7	13.49	8.4	16.88	7.39	9.29	9.37
Merged-chr2-33736984-1	chr2	33736484	33737484	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 9 of 9)	intron (NM_175184, intron 9 of 9)	-68832.0	NR_045729	320482.0	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	4.58	1.84	3.7	1.35	3.73	0.0	3.17	2.21	2.5
Merged-chr11-50275025-1	chr11	50274525	50275525	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 1 of 4)	intron (NM_175334, intron 1 of 4)	17311.0	NM_175334	103806.0	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like transcriptional coactivator 1	protein-coding	44.05	29.03	33.3	25.64	26.59	22.51	32.74	33.6	23.11
Merged-chr6-96116882-1	chr6	96116382	96117382	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	3728.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	8.58	3.23	5.55	26.99	34.06	31.35	19.01	14.59	5.0
Merged-chr6-113864963-1	chr6	113864463	113865463	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 3 of 21)	intron (NM_009723, intron 3 of 21)	26576.0	NM_001036684	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	5.15	2.3	3.7	4.05	3.73	0.0	4.22	3.54	0.0
Merged-chr1-9630269-1	chr1	9629769	9630769	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015470, intron 1 of 4)	intron (NR_015470, intron 1 of 4)	823.0	NR_015470	72481.0	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	16.59	12.9	20.35	16.87	13.06	24.11	16.9	19.46	12.49
Merged-chr13-119283616-1	chr13	119283116	119284116	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	125395.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	5.15	2.3	3.7	2.02	0.47	0.0	0.0	4.42	6.87
Merged-chr2-132575419-1	chr2	132574919	132575919	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355651, intron 1 of 19)	RSINE1|SINE|B4	2829.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	39.47	47.46	44.4	59.38	50.38	57.07	45.42	38.03	36.22
Merged-chr17-12031473-3	chr17	12031035	12032035	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-87749.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	8.01	2.3	1.85	2.7	0.93	8.84	1.06	1.77	6.25
Merged-chr8-10990984-1	chr8	10990484	10991484	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-16866.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	4.58	1.38	0.92	2.7	5.13	1.61	2.11	0.88	2.5
Merged-chr12-8347854-2	chr12	8347337	8348337	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34404.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	14.3	21.2	16.65	15.52	13.06	8.04	12.67	8.4	8.74
Merged-chr17-48039660-1	chr17	48039160	48040160	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NM_029689	76651.0	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	5.72	1.84	0.0	1.35	1.87	5.63	4.22	1.77	6.25
Merged-chr2-70662316-1	chr2	70661816	70662816	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	807.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	107.55	111.51	86.95	122.12	114.29	95.65	99.28	81.8	59.33
Merged-chr15-35305237-1	chr15	35304737	35305737	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9125.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.57	2.3	1.85	2.02	1.87	4.02	2.11	1.33	1.25
Merged-chr14-67932827-2	chr14	67932321	67933321	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	751.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	37.18	17.51	14.8	29.69	24.26	22.51	25.35	16.36	13.12
Merged-chr6-98985643-2	chr6	98985142	98986142	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	42656.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	10.3	6.91	11.1	4.72	5.6	8.84	5.28	4.86	5.0
Merged-chr8-67917302-2	chr8	67916785	67917785	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	-6339.0	NM_030263	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	4.0	5.07	1.85	2.7	3.27	3.22	3.17	4.42	0.0
Merged-chr9-20976419-1	chr9	20975919	20976919	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	CpG	374.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	133.29	147.91	149.84	122.12	126.89	117.35	161.6	164.49	58.71
Merged-chr2-146386408-1	chr2	146385908	146386908	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125596.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	6.86	6.45	0.0	7.42	7.46	6.43	2.11	3.1	3.12
Merged-chr8-33607631-1	chr8	33607131	33608131	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017374, intron 1 of 6)	ID_B1|SINE|B4	8010.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	21.17	20.27	30.52	16.19	14.46	28.13	103.51	111.87	51.84
Merged-chr4-89052052-1	chr4	89051552	89052552	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033533, intron 1 of 2)	intron (NR_033533, intron 1 of 2)	1745.0	NR_033533	100040617.0	Mm.171720	NR_033533	ENSMUSG00000085183	Wincr1	Gm12603	WNT induced non-coding RNA 1	ncRNA	2.29	6.91	0.0	1.35	3.73	1.61	2.11	3.98	1.25
Merged-chr13-94161888-1	chr13	94161388	94162388	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	104092.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	24.03	14.28	11.1	22.94	9.33	20.09	12.67	8.84	9.99
Merged-chr4-63429856-1	chr4	63429356	63430356	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001008791, intron 7 of 12)	intron (NM_001008791, intron 7 of 12)	-26411.0	NM_001045514	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	4.0	1.38	2.77	1.35	0.93	3.22	4.22	0.44	0.62
Merged-chr17-27825711-1	chr17	27825211	27826211	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-5169.0	NM_001271511	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	210.52	188.92	154.47	211.86	172.61	194.52	191.17	250.71	127.4
Merged-chr2-91457833-1	chr2	91457333	91458333	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172668, intron 1 of 37)	CpG	302.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	8.01	2.3	0.0	7.42	1.4	3.22	1.06	1.33	2.5
Merged-chr4-124657091-1	chr4	124656591	124657591	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011141)	promoter-TSS (NM_011141)	-555.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	1.72	2.3	7.4	4.72	2.33	5.63	7.39	0.88	0.0
Merged-chr12-112990863-1	chr12	112990363	112991363	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028193, intron 2 of 17)	PB1D10|SINE|Alu	9758.0	NM_028193	72308.0	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	3.43	10.6	3.7	13.49	5.13	6.43	2.11	1.33	12.49
Merged-chr12-8301957-2	chr12	8301403	8302403	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013527)	promoter-TSS (NM_013527)	51.0	NM_001312876	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	4.0	0.92	6.47	2.02	0.0	0.0	3.17	0.88	0.62
Merged-chrX-159510302-1	chrX	159509802	159510802	+	749.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-22366.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	49.2	51.61	35.15	42.51	27.52	26.53	20.07	34.93	15.61
Merged-chr2-3471584-1	chr2	3471084	3472084	+	749.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027509, intron 1 of 4)	PB1D11|SINE|Alu	3402.0	NM_022724	64707.0	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 2	protein-coding	9.72	5.53	3.7	9.45	5.6	1.61	5.28	4.86	3.75
Merged-chr2-49748786-3	chr2	49748285	49749285	+	748.994446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 21 of 25)	MIR|SINE|MIR	-38901.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	12.59	5.53	1.85	7.42	2.8	4.82	4.22	7.52	3.12
Merged-chr4-43558840-3	chr4	43558355	43559355	+	748.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011602, intron 1 of 56)	intron (NM_011602, intron 1 of 56)	3728.0	NM_011602	21894.0	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	26.89	33.18	21.27	34.41	29.39	48.23	39.08	33.16	13.74
Merged-chr6-17629947-3	chr6	17629451	17630451	+	748.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7059.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	98.39	118.88	113.77	69.5	62.05	113.33	154.2	143.26	111.17
Merged-chr7-3962195-3	chr7	3961690	3962690	+	748.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46689.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	4.58	12.44	5.55	4.05	2.33	8.04	6.34	6.63	13.12
Merged-chr14-103535854-3	chr14	103535337	103536337	+	748.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 4 of 30)	intron (NM_022886, intron 4 of 30)	22496.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.58	4.15	5.55	4.72	7.0	4.82	9.51	1.33	6.87
Merged-chr15-96328873-3	chr15	96328366	96329366	+	748.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175251, intron 3 of 20)	B2_Mm1a|SINE|B2	41344.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	12.01	2.3	0.0	16.19	10.73	6.43	10.56	3.98	5.0
Merged-chr14-62243440-2	chr14	62242942	62243942	+	748.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49537.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	45.19	54.37	51.8	40.48	29.39	73.14	24.29	27.86	41.22
Merged-chr10-80931930-3	chr10	80931427	80932427	+	748.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008655, exon 4 of 4)	3' UTR (NM_008655, exon 4 of 4)	1836.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	19.45	10.14	12.02	13.49	10.73	14.47	30.63	19.01	16.24
Merged-chr1-23187951-3	chr1	23187437	23188437	+	748.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84332.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	55.49	82.94	64.75	41.83	45.25	68.32	63.37	59.69	40.59
Merged-chr11-64610867-3	chr11	64610315	64611315	+	748.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-174141.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.29	10.14	7.4	14.17	12.13	28.94	13.73	3.1	3.75
Merged-chr17-65724450-2	chr17	65723951	65724951	+	748.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	48301.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	20.02	23.04	15.72	23.62	18.19	32.96	19.01	15.03	29.35
Merged-chr13-74018027-2	chr13	74017521	74018521	+	748.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	8602.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	16.59	20.27	32.37	8.77	9.33	20.09	7.39	11.94	21.23
Merged-chr7-126780748-2	chr7	126780216	126781216	+	748.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-767.0	NM_011538	21389.0	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	8.01	10.14	12.95	27.66	5.6	22.51	16.9	13.27	13.12
Merged-chr4-155653306-2	chr4	155652811	155653811	+	748.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001320235)	promoter-TSS (NM_001320235)	-21.0	NM_001320235	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	11.44	1.84	1.85	10.12	0.93	0.0	1.06	0.44	2.5
Merged-chr2-60369779-3	chr2	60369297	60370297	+	748.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013825, intron 2 of 34)	intron (NM_013825, intron 2 of 34)	13434.0	NM_013825	17076.0	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	3.43	2.76	7.4	3.37	7.0	0.0	5.28	2.21	1.87
Merged-chr4-53180693-3	chr4	53180184	53181184	+	748.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20789.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	5.15	6.91	1.85	6.75	7.0	4.82	4.22	5.31	1.25
Merged-chr8-106561288-2	chr8	106560775	106561775	+	748.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25868.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	5.15	1.84	3.7	4.72	2.8	4.82	5.28	3.54	5.0
Merged-chr2-127322744-3	chr2	127322254	127323254	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13405.0	NM_010090	13537.0	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	21.17	17.05	13.87	7.42	7.0	13.66	12.67	17.69	18.11
Merged-chr19-40626283-3	chr19	40625784	40626784	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304721, intron 1 of 9)	L1MA4|LINE|L1	13918.0	NM_001304721	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	45.19	47.92	34.22	77.59	41.05	45.01	19.01	31.84	14.36
Merged-chr1-184023271-3	chr1	184022776	184023776	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10722.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	32.61	46.08	62.9	37.11	39.19	62.7	48.58	59.69	51.84
Merged-chr10-11492154-3	chr10	11491651	11492651	+	748.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-117073.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	1.06	3.1	2.5
Merged-chr13-24613169-1	chr13	24612669	24613669	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-1437.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	12.59	8.29	9.25	12.14	7.46	7.23	3.17	4.42	4.37
Merged-chr9-122230890-2	chr9	122230378	122231378	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	43150.0	NR_106185	102465896.0		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	8.01	0.92	1.85	5.4	3.27	4.82	13.73	8.84	3.75
Merged-chr7-126117101-1	chr7	126116601	126117601	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028816, intron 14 of 23)	L1MC3|LINE|L1	-34690.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	16.59	24.88	24.05	19.57	17.73	17.68	22.18	18.13	17.49
Merged-chr4-142085203-2	chr4	142084698	142085698	+	748.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-894.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	53.77	36.4	49.95	42.51	30.79	49.83	71.82	57.04	40.59
Merged-chr13-69391734-2	chr13	69391232	69392232	+	748.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142132.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	7.44	4.15	5.55	14.84	11.2	8.04	33.8	39.8	24.36
Merged-chr17-86063692-2	chr17	86063186	86064186	+	748.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030133, intron 14 of 20)	intron (NM_030133, intron 14 of 20)	81489.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	5.15	2.76	3.7	0.67	0.93	3.22	4.22	4.86	2.5
Merged-chr15-13173732-2	chr15	13173235	13174235	+	748.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007666)	promoter-TSS (NM_007666)	-60.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	1.84	0.92	2.02	2.8	1.61	1.06	0.44	2.5
Merged-chr11-101964024-4	chr11	101963480	101964480	+	748.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024449, exon 2 of 2)	exon (NM_024449, exon 2 of 2)	3035.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	78.94	27.19	11.1	39.81	19.13	9.65	34.85	29.63	8.74
Merged-chr14-51844112-3	chr14	51843601	51844601	+	748.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9667.0	NM_053111	93719.0	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	7.44	8.29	9.25	5.4	5.6	7.23	6.34	4.42	8.74
Merged-chr7-92962019-2	chr7	92961531	92962531	+	748.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR16|LTR|ERVK	86778.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	3.43	5.99	5.55	4.72	2.8	1.61	8.45	0.88	1.25
Merged-chr11-61564804-2	chr11	61564304	61565304	+	748.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252189, intron 1 of 8)	intron (NM_001252189, intron 1 of 8)	14883.0	NM_010148	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	17.73	10.14	11.1	12.82	7.93	15.27	5.28	6.19	11.24
Merged-chr4-63594039-2	chr4	63593519	63594519	+	748.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6745.0	NM_001354647	670833.0	Mm.32213	NM_001354647	ENSMUSG00000084782	Gm11213	-	predicted gene 11213	protein-coding	10.87	15.21	13.87	18.89	15.86	24.11	19.01	10.17	15.61
Merged-chr2-130501829-2	chr2	130501331	130502331	+	748.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	51553.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	34.9	30.87	35.15	20.24	19.13	32.96	44.36	42.89	27.48
Merged-chr2-79131439-2	chr2	79130933	79131933	+	748.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-123993.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	132.14	127.18	69.37	122.12	120.83	134.23	85.55	104.79	86.81
Merged-chr17-68004105-3	chr17	68003591	68004591	+	748.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	17.0	NM_172964	268970.0	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	4.58	1.84	7.4	0.67	0.47	4.82	1.06	1.33	0.0
Merged-chr6-57570587-3	chr6	57570064	57571064	+	748.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	9.72	5.53	7.4	3.37	2.8	3.22	4.22	4.42	3.12
Merged-chr3-59210208-3	chr3	59209700	59210700	+	748.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028808, exon 2 of 2)	exon (NM_028808, exon 2 of 2)	682.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	94.39	143.3	102.67	118.08	79.77	73.14	136.25	122.92	78.69
Merged-chr8-120739663-2	chr8	120739127	120740127	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301811, intron 1 of 8)	intron (NM_001301811, intron 1 of 8)	988.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	37.18	33.64	39.77	42.51	39.65	72.34	83.44	67.21	38.72
Merged-chr15-64223634-1	chr15	64223134	64224134	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	89039.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	15.45	13.36	13.87	13.49	14.46	16.08	12.67	14.59	8.74
Merged-chr5-100635884-2	chr5	100635386	100636386	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38370.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	67.5	47.92	52.72	58.03	31.26	51.44	74.99	59.25	33.72
Merged-chr6-148478756-2	chr6	148478241	148479241	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34389.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.0	5.53	1.85	1.35	3.27	0.0	7.39	2.21	3.75
Merged-chr3-145670955-2	chr3	145670449	145671449	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-20964.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	6.86	8.29	5.55	12.14	5.6	24.92	12.67	10.17	21.86
Merged-chr19-44118016-2	chr19	44117521	44118521	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081077, intron 10 of 13)	intron (NM_001081077, intron 10 of 13)	-10544.0	NM_001162410	12675.0	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK alpha|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	9.15	3.69	19.42	12.82	6.53	12.06	7.39	15.48	16.24
Merged-chr10-80018886-2	chr10	80018377	80019377	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027521)	promoter-TSS (NM_027521)	-798.0	NM_027521	70719.0	Mm.243954	NM_027521	ENSMUSG00000035697	Arhgap45	6330406L22Rik|AW539505|Ha-1|Hmha1	Rho GTPase activating protein 45	protein-coding	5.15	5.99	12.95	8.77	9.8	11.25	12.67	5.31	1.25
Merged-chr8-121930202-3	chr8	121929703	121930703	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	RLTR20C2_MM|LTR|ERVK	14709.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	9.15	3.23	5.55	12.82	4.67	1.61	5.28	2.21	0.0
Merged-chr4-49626772-2	chr4	49626282	49627282	+	748.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5278.0	NM_001163263	109331.0	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	8.01	4.15	2.77	12.82	2.8	6.43	4.22	5.75	5.0
Merged-chr16-32803713-2	chr16	32803221	32804221	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6286.0	NM_001145874	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	9.15	4.61	3.7	2.7	3.73	7.23	7.39	2.21	7.49
Merged-chr1-161894250-2	chr1	161893741	161894741	+	748.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17559.0	NM_001357402	226551.0	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	41.76	60.36	23.12	24.96	21.93	22.51	32.74	38.91	32.48
Merged-chr2-51148612-3	chr2	51148108	51149108	+	748.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028810, intron 1 of 4)	intron (NM_028810, intron 1 of 4)	503.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	70.36	79.72	56.42	43.18	34.99	24.92	29.57	30.51	33.72
Merged-chr15-64047785-3	chr15	64047273	64048273	+	748.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	11991.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	41.19	51.61	73.07	34.41	28.92	40.19	55.98	31.84	33.1
Merged-chr5-137072352-2	chr5	137071850	137072850	+	748.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008871)	promoter-TSS (NM_008871)	-78.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	2.86	4.15	6.47	14.84	10.26	7.23	6.34	11.05	4.37
Merged-chr2-73566281-3	chr2	73565777	73566777	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007389, exon 9 of 9)	exon (NM_007389, exon 9 of 9)	14061.0	NM_007389	11435.0	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	6.29	2.3	1.85	3.37	2.33	1.61	4.22	2.21	1.25
Merged-chr9-64786065-3	chr9	64785559	64786559	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24952.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	22.88	14.28	7.4	24.96	10.26	16.08	7.39	12.38	7.49
Merged-chr1-93486726-3	chr1	93486234	93487234	+	748.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159719, intron 1 of 12)	B2_Mm1a|SINE|B2	7673.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	13.73	30.41	30.52	20.92	14.93	22.51	21.12	38.03	13.12
Merged-chr11-63047167-2	chr11	63046643	63047643	+	748.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14516.0	NM_027660	71062.0	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	323.21	330.84	183.14	291.48	268.71	210.59	298.9	348.87	138.02
Merged-chr8-33722242-2	chr8	33721767	33722767	+	748.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9647.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	5.15	1.84	3.7	4.05	1.87	1.61	4.22	4.86	3.12
Merged-chr17-57100581-2	chr17	57100065	57101065	+	748.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033508, intron 3 of 3)	ID_B1|SINE|B4	-4820.0	NM_009404	21950.0	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	6.29	2.3	0.0	8.77	3.73	3.22	6.34	3.98	6.25
Merged-chr8-25043631-2	chr8	25043118	25044118	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 11 of 11)	MIR|SINE|MIR	-4656.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	24.6	17.05	21.27	36.43	21.93	30.54	51.75	38.47	15.61
Merged-chr11-116109022-3	chr11	116108538	116109538	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205081, intron 1 of 5)	intron (NM_001205081, intron 1 of 5)	1197.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	92.1	65.43	50.87	59.38	32.66	53.05	31.69	22.11	26.85
Merged-chr1-155293630-3	chr1	155293148	155294148	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 11 of 14)	intron (NM_011273, intron 11 of 14)	123796.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.72	6.45	1.85	2.7	7.0	3.22	5.28	2.21	2.5
Merged-chr7-139296445-3	chr7	139295911	139296911	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47929.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	31.46	47.92	43.47	49.25	45.72	46.62	34.85	38.47	33.1
Merged-chr19-33043007-1	chr19	33042507	33043507	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-114105.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	5.72	0.92	7.4	6.75	4.67	3.22	13.73	4.86	9.99
Merged-chr6-71980684-1	chr6	71980184	71981184	+	748.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61844.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	33.75	9.68	6.47	41.16	28.92	32.15	45.42	25.65	13.12
Merged-chr7-132564991-3	chr7	132564484	132565484	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016978, intron 4 of 9)	intron (NM_016978, intron 4 of 9)	11414.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	5.15	5.53	1.85	7.42	6.53	6.43	6.34	4.42	3.75
Merged-chr11-79340215-3	chr11	79339705	79340705	+	748.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010897, intron 1 of 57)	CpG	313.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	165.9	106.44	93.42	136.29	83.51	82.79	137.3	69.42	56.83
Merged-chr6-33980910-6	chr6	33980404	33981404	+	748.325012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48544.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	40.04	34.56	37.0	31.04	35.45	44.21	69.71	66.77	46.84
Merged-chr14-55760310-3	chr14	55759827	55760827	+	748.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	-1101.0	NM_020490	57260.0	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	10.3	10.6	8.32	7.42	8.86	6.43	15.84	9.29	1.25
Merged-chr13-95887734-2	chr13	95887239	95888239	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	4183.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	72.65	39.63	31.45	98.51	56.91	63.5	61.26	43.33	50.59
Merged-chr1-165188980-2	chr1	165188471	165189471	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151711, intron 1 of 6)	intron (NR_151711, intron 1 of 6)	5462.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	3.43	3.23	13.87	8.77	7.93	4.82	12.67	13.27	16.86
Merged-chr2-31483123-3	chr2	31482617	31483617	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002687, intron 5 of 15)	intron (NR_002687, intron 5 of 15)	12809.0	NR_002687	432466.0	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	1.72	1.84	5.55	2.02	0.47	6.43	3.17	2.65	3.75
Merged-chr2-133499084-2	chr2	133498596	133499596	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53063.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	29.75	19.35	5.55	47.9	23.79	27.33	17.96	12.38	8.12
Merged-chr9-70832345-2	chr9	70831830	70832830	+	748.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	102478.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	52.63	55.29	37.0	41.16	36.39	74.75	51.75	50.41	34.35
Merged-chr7-35157706-2	chr7	35157203	35158203	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28682.0	NM_017394	53896.0	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	5.15	5.07	9.25	10.12	3.27	3.22	12.67	5.75	6.25
Merged-chr4-109431090-2	chr4	109430571	109431571	+	748.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145948, intron 9 of 17)	intron (NM_001145948, intron 9 of 17)	15424.0	NM_001145948	230603.0	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	2.86	1.38	1.85	2.7	2.8	2.41	3.17	0.88	0.0
Merged-chr2-52949470-3	chr2	52948949	52949949	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	91581.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	28.03	38.25	29.6	56.0	40.59	57.87	42.25	44.22	26.23
Merged-chr2-150915305-3	chr2	150914824	150915824	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027014, intron 2 of 6)	RSINE1|SINE|B4	5730.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	92.67	80.18	37.92	70.85	65.78	42.6	134.14	126.02	54.33
Merged-chr11-20401006-3	chr11	20400481	20401481	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68268.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.0	3.69	2.77	4.05	4.2	4.82	10.56	7.96	5.62
Merged-chr8-123332873-3	chr8	123332368	123333368	+	748.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172287, exon 1 of 15)	exon (NM_172287, exon 1 of 15)	155.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	3.43	0.92	0.0	2.02	0.47	2.41	2.11	0.0	0.0
Merged-chr2-30061849-3	chr2	30061358	30062358	+	748.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023871)	promoter-TSS (NM_023871)	-138.0	NM_023871	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	50.91	36.4	37.0	51.95	37.79	66.71	59.15	54.39	28.73
Merged-chr3-81123655-3	chr3	81123161	81124161	+	748.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	87245.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	36.61	28.57	22.2	28.34	21.93	16.08	29.57	35.37	18.74
Merged-chr4-43267138-3	chr4	43266640	43267640	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177195)	promoter-TSS (NM_177195)	-19.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	14.3	12.9	12.95	12.82	8.4	12.86	1.06	3.98	3.75
Merged-chr1-36960284-3	chr1	36959794	36960794	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20767.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	48.05	45.62	30.52	35.76	23.79	13.66	28.52	32.72	14.99
Merged-chr4-149779110-3	chr4	149778539	149779539	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-4772.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	29.17	25.8	28.67	20.24	23.33	29.74	25.35	26.97	23.11
Merged-chr7-101379149-3	chr7	101378662	101379662	+	748.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	1040.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	85.24	76.95	80.47	71.52	50.38	74.75	107.73	88.43	63.7
Merged-chr3-116614492-2	chr3	116613978	116614978	+	748.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_030016, exon 1 of 12)	5' UTR (NM_030016, exon 1 of 12)	109.0	NM_030016	229780.0	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	53.77	60.82	33.3	66.12	45.25	41.8	44.36	53.5	39.97
Merged-chr15-98387802-2	chr15	98387309	98388309	+	748.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-8701.0	NM_147036	259038.0	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	1.14	5.53	4.62	0.67	3.27	1.61	8.45	2.65	3.75
Merged-chrX-134910535-2	chrX	134910043	134911043	+	748.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53354.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	9.15	8.29	7.4	8.77	13.06	4.82	6.34	7.96	3.75
Merged-chr9-3035905-2	chr9	3035386	3036386	+	748.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	2857.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	45.19	169.57	17.57	80.97	236.99	13.66	106.67	89.32	18.74
Merged-chr19-32789747-3	chr19	32789254	32790254	+	748.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	32177.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	55.49	58.52	40.7	43.18	36.39	41.8	54.92	56.16	41.22
Merged-chr16-95932381-3	chr16	95931874	95932874	+	748.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3297.0	NR_040484	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	22.88	17.05	18.5	21.59	20.99	26.53	23.24	14.15	21.86
Merged-chr8-64949407-2	chr8	64948899	64949899	+	748.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163747, intron 1 of 4)	ID_B1|SINE|B4	2214.0	NM_028427	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	3.43	9.68	10.17	10.8	3.27	9.65	9.51	11.94	12.49
Merged-chr16-17205201-3	chr16	17204686	17205686	+	748.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2949.0	NM_001033338	239731.0	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	11.44	11.98	5.55	15.52	5.13	6.43	29.57	18.13	6.87
Merged-chr3-67557928-3	chr3	67557424	67558424	+	748.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-24844.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	147.02	103.22	74.0	72.87	37.79	33.76	138.36	150.34	64.33
Merged-chr2-90631050-3	chr2	90630530	90631530	+	748.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46185.0	NM_021512	59015.0	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	7.44	8.29	0.0	13.49	6.06	8.84	5.28	7.52	3.75
Merged-chr15-100681954-3	chr15	100681442	100682442	+	748.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033612, intron 5 of 7)	B1_Mur2|SINE|Alu	5978.0	NM_033612	109901.0	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	17.73	22.12	46.25	31.71	17.73	21.7	40.14	33.16	39.35
Merged-chr7-6173132-1	chr7	6172632	6173632	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028316, intron 1 of 3)	PB1D7|SINE|Alu	619.0	NM_001146024	72667.0	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	32.61	27.65	43.47	28.34	31.26	37.78	43.3	34.05	21.86
Merged-chr1-153996861-1	chr1	153996361	153997361	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	96932.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	7.44	6.91	5.55	5.4	3.27	6.43	12.67	6.63	4.37
Merged-chr8-115626567-2	chr8	115626081	115627081	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80313.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	6.29	5.53	1.85	14.17	8.86	6.43	9.51	2.65	5.0
Merged-chr4-32369157-1	chr4	32368657	32369657	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48278.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	16.02	9.22	12.95	14.84	7.93	12.86	0.0	2.65	3.75
Merged-chr18-80612111-2	chr18	80611632	80612632	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-67586.0	NR_028424	100039348.0	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	10.3	5.53	7.4	7.42	14.46	4.02	8.45	6.63	1.25
Merged-chr15-85010317-1	chr15	85009817	85010817	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6824.0	NM_023478	22270.0	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	8.01	11.52	15.72	16.87	2.8	16.88	21.12	16.36	4.37
Merged-chr16-4728202-2	chr16	4727694	4728694	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	1833.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	34.32	45.62	36.07	44.53	50.85	56.27	87.66	64.56	31.85
Merged-chr2-145743462-1	chr2	145742962	145743962	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	42267.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	4.0	1.84	1.85	2.02	4.2	0.0	3.17	6.63	2.5
Merged-chr2-133021446-2	chr2	133020957	133021957	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75421.0	NM_198029	241639.0	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	5.15	8.75	13.87	12.14	10.26	10.45	13.73	4.86	13.74
Merged-chr2-160362848-1	chr2	160362348	160363348	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010658)	TTS (NM_010658)	4217.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	36.04	35.48	38.85	47.23	37.32	35.37	55.98	43.77	47.46
Merged-chr5-100513642-2	chr5	100513144	100514144	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4665.0	NM_001359203	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	26.89	15.21	13.87	28.34	20.99	25.72	38.02	37.58	20.61
Merged-chr17-85393240-1	chr17	85392740	85393740	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028576, intron 4 of 10)	intron (NM_028576, intron 4 of 10)	225156.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	8.01	7.37	2.77	7.42	11.66	15.27	22.18	11.05	6.25
Merged-chr11-32339404-1	chr11	32338904	32339904	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8407.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	9.15	5.99	8.32	2.7	1.87	0.0	4.22	0.0	3.75
Merged-chr12-80242843-1	chr12	80242343	80243343	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 1 of 20)	ID_B1|SINE|B4	17528.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	13.73	14.28	14.8	14.84	10.26	14.47	8.45	7.07	7.49
Merged-chr11-19021150-1	chr11	19020650	19021650	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2181.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	10.3	6.45	5.55	14.17	5.6	11.25	12.67	7.07	7.49
Merged-chr17-74868426-2	chr17	74867953	74868953	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-137076.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	16.02	8.75	17.57	24.29	8.86	16.08	22.18	16.8	11.24
Merged-chr2-91959132-1	chr2	91958632	91959632	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138306, intron 1 of 30)	intron (NM_138306, intron 1 of 30)	4431.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	11.44	8.29	15.72	17.54	7.46	21.7	14.79	3.1	14.99
Merged-chr12-21286864-1	chr12	21286364	21287364	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008403)	promoter-TSS (NM_008403)	567.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	144.73	258.5	245.11	141.69	184.27	188.09	213.35	297.58	176.12
Merged-chr10-18998314-1	chr10	18997814	18998814	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	13649.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	9.15	3.23	9.25	3.37	0.93	4.82	1.06	3.54	0.0
Merged-chr3-56270589-1	chr3	56270089	56271089	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER31A|LTR|ERV1	-86888.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	4.58	8.75	0.0	20.24	12.6	5.63	16.9	19.46	8.74
Merged-chr7-45453589-2	chr7	45453186	45454186	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B3A|SINE|B2	6200.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	9.72	4.15	0.92	8.77	3.27	4.82	5.28	2.21	3.75
Merged-chr7-142356347-1	chr7	142355847	142356847	+	748.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15912.0	NM_177265	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	6.86	4.61	7.4	5.4	0.47	1.61	7.39	4.42	3.75
Merged-chr6-3184052-1	chr6	3183552	3184552	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104467.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	8.58	11.52	12.95	17.54	10.73	9.65	9.51	5.75	9.37
Merged-chr12-111737570-1	chr12	111737070	111738070	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	Lx8b|LINE|L1	-21279.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	18.31	12.9	7.4	4.72	0.93	7.23	5.28	2.21	2.5
Merged-chr5-77386456-1	chr5	77385956	77386956	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	21589.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	1.72	4.15	0.0	6.75	3.73	4.82	3.17	6.19	5.0
Merged-chr4-107277067-3	chr4	107276555	107277555	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355460, intron 4 of 5)	intron (NM_001355460, intron 4 of 5)	23152.0	NM_028394	72938.0	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25|PP25	heat shock protein family B (small), member 11	protein-coding	9.15	4.61	11.1	9.45	6.53	9.65	7.39	6.19	3.75
Merged-chr10-8753610-1	chr10	8753110	8754110	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 9 of 19)	intron (NM_175155, intron 9 of 19)	132460.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	29.17	20.74	13.87	20.92	13.06	20.9	25.35	13.71	16.86
Merged-chr15-8642486-1	chr15	8641986	8642986	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148938, intron 7 of 9)	intron (NM_148938, intron 7 of 9)	68321.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	6.86	7.83	5.55	12.82	7.0	2.41	12.67	7.07	7.49
Merged-chr8-36761977-1	chr8	36761477	36762477	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-28923.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.72	1.84	14.8	2.7	3.73	7.23	5.28	1.77	3.75
Merged-chr4-152140650-2	chr4	152140149	152141149	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207687, intron 2 of 15)	intron (NM_207687, intron 2 of 15)	-4324.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	3.43	3.23	7.4	2.7	3.73	2.41	6.34	4.86	2.5
Merged-chr4-105239758-1	chr4	105239258	105240258	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82411.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	13.73	8.29	3.7	7.42	7.0	4.82	22.18	22.55	9.99
Merged-chr17-47759788-1	chr17	47759288	47760288	+	748.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	21857.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	52.63	47.92	34.22	91.76	85.37	78.77	73.93	58.37	26.85
Merged-chr19-6995545-2	chr19	6995035	6996035	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027351)	promoter-TSS (NR_027351)	502.0	NM_026675	68323.0	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	13.73	17.05	13.87	10.12	15.86	15.27	20.07	14.59	5.62
Merged-chr11-54921797-1	chr11	54921297	54922297	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18943.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	61.21	53.91	43.47	60.72	59.25	62.7	36.97	51.73	30.6
Merged-chr9-89220985-3	chr9	89220519	89221519	+	748.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359993, intron 2 of 2)	intron (NM_001359993, intron 2 of 2)	9635.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	31.46	30.41	19.42	60.05	62.05	32.15	21.12	12.82	7.49
Merged-chr16-44757317-1	chr16	44756817	44757817	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8419.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	25.17	33.64	28.67	58.03	44.78	41.8	22.18	21.67	11.87
Merged-chr10-96751092-1	chr10	96750592	96751592	+	748.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134091.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	5.15	5.07	6.47	10.8	9.8	9.65	3.17	2.65	3.75
Merged-chr7-110250885-3	chr7	110250403	110251403	+	747.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 2 of 11)	L1MB8|LINE|L1	29200.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	38.33	32.25	24.05	36.43	24.72	49.03	30.63	17.24	30.6
Merged-chr12-14152113-2	chr12	14151604	14152604	+	747.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029007)	promoter-TSS (NM_029007)	-66.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.0	0.92	3.7	3.37	1.4	6.43	7.39	6.63	2.5
Merged-chr6-84737139-3	chr6	84736637	84737637	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-143229.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	13.73	4.15	8.32	9.45	9.33	4.82	7.39	6.63	12.49
Merged-chr2-163699629-3	chr2	163699131	163700131	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011106, intron 1 of 3)	intron (NM_011106, intron 1 of 3)	5594.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	17.73	12.44	13.87	18.89	14.0	13.66	14.79	15.92	9.99
Merged-chr5-122108284-3	chr5	122107777	122108777	+	747.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289809, intron 11 of 11)	intron (NM_001289809, intron 11 of 11)	7326.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	11.44	4.61	0.0	14.17	2.33	2.41	5.28	5.31	2.5
Merged-chr17-21845843-2	chr17	21845344	21846344	+	747.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029281)	promoter-TSS (NM_029281)	-85.0	NM_029281	75424.0	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	5.15	5.07	4.62	10.12	7.93	3.22	4.22	2.65	7.49
Merged-chr2-158379904-3	chr2	158379415	158380415	+	747.861145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175692, intron 3 of 4)	B2_Mm2|SINE|B2	4277.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	4.0	5.07	3.7	5.4	0.47	3.22	6.34	1.33	3.75
Merged-chr10-39261741-2	chr10	39261249	39262249	+	747.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97955.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	34.32	18.89	22.2	23.62	14.93	18.49	14.79	5.31	8.74
Merged-chr8-35658430-2	chr8	35657935	35658935	+	747.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	-69415.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	6.29	4.15	5.55	6.07	2.8	3.22	6.34	0.88	3.12
Merged-chr6-24530322-3	chr6	24529819	24530819	+	747.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	2175.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	5.15	2.76	0.0	6.07	2.8	1.61	11.62	0.88	3.12
Merged-chr3-60437887-3	chr3	60437408	60438408	+	747.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34922.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	7.44	12.44	12.95	14.17	17.73	14.47	33.8	47.31	31.85
Merged-chr6-85155323-3	chr6	85154816	85155816	+	747.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-17552.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	4.58	3.69	7.4	2.7	1.4	3.22	3.17	6.63	3.12
Merged-chr1-88265097-2	chr1	88264592	88265592	+	747.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	4316.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	18.88	9.68	22.2	12.82	9.33	29.74	19.01	9.29	11.24
Merged-chr2-18028729-3	chr2	18028219	18029219	+	747.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028378, exon 1 of 1)	non-coding (NR_028378, exon 1 of 1)	1470.0	NR_028378	100034739.0	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	1.72	2.3	7.4	3.37	2.33	3.22	1.06	4.42	5.0
Merged-chr14-22073596-2	chr14	22073097	22074097	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	53885.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	5.15	3.69	0.0	3.37	5.13	0.0	2.11	0.44	5.0
Merged-chr2-170132220-2	chr2	170131743	170132743	+	747.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159683, intron 1 of 6)	intron (NM_001159683, intron 1 of 6)	-1023.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	80.66	137.77	57.35	77.59	66.71	73.14	119.35	145.92	93.68
Merged-chr4-145209436-1	chr4	145208936	145209936	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14431.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	6.86	6.45	11.1	3.37	3.73	11.25	10.56	7.52	6.25
Merged-chr5-103644411-1	chr5	103643911	103644911	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	11313.0	NM_028824	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	5.15	1.84	0.92	4.72	7.46	4.82	0.0	1.77	2.5
Merged-chr9-41051698-2	chr9	41051190	41052190	+	747.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	27816.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	10.87	6.91	9.25	6.07	5.13	8.04	14.79	17.69	14.36
Merged-chr8-91343056-2	chr8	91342542	91343542	+	747.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	29517.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	32.04	17.05	13.87	8.1	7.93	8.04	22.18	28.3	17.49
Merged-chr11-51859687-1	chr11	51859187	51860187	+	747.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2057.0	NM_001357588	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	31.46	32.25	38.85	35.09	23.79	48.23	51.75	35.37	34.97
Merged-chr10-117874171-3	chr10	117873682	117874682	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-28208.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	27.46	21.66	22.2	31.71	18.66	21.7	36.97	30.07	15.61
Merged-chr18-70504309-3	chr18	70503807	70504807	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12479.0	NR_105775	102466152.0		NR_105775	ENSMUSG00000098721	Mir6357	Gm27333|mmu-mir-6357	microRNA 6357	ncRNA	2.86	1.38	5.55	2.7	2.8	0.0	4.22	2.21	5.62
Merged-chr7-12979731-3	chr7	12979201	12980201	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175558, intron 3 of 5)	(TGGGGG)n|Simple_repeat|Simple_repeat	1853.0	NM_001168561	269870.0	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	32.04	24.88	21.27	23.62	14.0	22.51	128.85	125.58	96.18
Merged-chr4-149144588-3	chr4	149144079	149145079	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6979.0	NM_027263	69928.0	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	5.72	5.53	0.0	7.42	3.73	6.43	5.28	3.54	2.5
Merged-chr18-43523495-3	chr18	43522990	43523990	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85204.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.86	1.38	8.32	4.72	3.27	1.61	4.22	1.77	3.75
Merged-chr9-123999944-1	chr9	123999444	124000444	+	747.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21536.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	11.44	14.75	6.47	28.34	19.13	41.8	29.57	25.2	14.36
Merged-chr10-93069500-1	chr10	93069000	93070000	+	747.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 2 of 67)	intron (NM_001347060, intron 2 of 67)	12096.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	10.3	5.99	5.55	8.77	7.46	11.25	26.4	36.7	37.47
Merged-chr11-115163988-3	chr11	115163477	115164477	+	747.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	CpG	636.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	221.38	176.02	146.14	190.95	153.01	136.64	202.79	204.28	96.18
Merged-chr18-74876713-2	chr18	74876213	74877213	+	747.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84550.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	1.72	2.76	0.92	6.75	3.73	0.0	3.17	0.88	3.12
Merged-chr18-68154304-2	chr18	68153801	68154801	+	747.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-73645.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	12.01	13.82	22.2	16.19	22.39	9.65	8.45	7.07	2.5
Merged-chr7-16403574-3	chr7	16403047	16404047	+	747.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	2351.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	35.47	54.37	23.12	34.41	49.92	52.25	51.75	53.06	26.85
Merged-chr7-133046759-3	chr7	133046248	133047248	+	747.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	-31501.0	NM_001170744	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	16.02	33.18	13.87	26.99	23.33	20.09	25.35	30.07	12.49
Merged-chr3-88740066-3	chr3	88739564	88740564	+	747.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	23210.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	6.29	3.23	2.77	6.07	4.2	1.61	5.28	5.31	6.25
Merged-chr18-61895079-2	chr18	61894577	61895577	+	747.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	16747.0	NM_198649	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	4.0	4.15	3.7	1.35	2.8	4.02	3.17	2.21	2.5
Merged-chr1-118559709-3	chr1	118559228	118560228	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-68217.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	40.04	32.25	37.0	45.88	32.66	46.62	74.99	62.35	28.1
Merged-chr11-59637185-3	chr11	59636701	59637701	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24235.0	NM_001011740	257886.0	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	6.29	0.92	5.55	4.05	4.67	2.41	6.34	1.77	0.0
Merged-chr4-139043786-3	chr4	139043288	139044288	+	747.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 14 of 16)	L1MEd|LINE|L1	31001.0	NM_021358	15565.0	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	8.58	5.53	3.7	13.49	12.6	12.86	4.22	1.77	5.0
Merged-chr8-68881257-1	chr8	68880757	68881757	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	CpG	702.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	35.47	39.17	46.25	48.58	35.45	53.85	70.76	89.32	44.97
Merged-chr2-128355603-2	chr2	128355106	128356106	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	73745.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	8.01	4.61	3.7	7.42	5.6	10.45	5.28	2.21	2.5
Merged-chr6-120572617-2	chr6	120572116	120573116	+	747.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045733, intron 3 of 3)	intron (NR_045733, intron 3 of 3)	17820.0	NR_045733	73505.0	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	4.58	1.84	12.95	7.42	0.0	0.0	7.39	1.77	1.25
Merged-chr15-102283054-2	chr15	102282543	102283543	+	747.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3587.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	23.45	30.41	48.1	32.39	21.93	44.21	39.08	29.18	30.6
Merged-chr2-122032190-1	chr2	122031690	122032690	+	747.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256055, intron 2 of 7)	intron (NM_001256055, intron 2 of 7)	3607.0	NM_001256055	100042807.0	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	0.57	0.46	0.0	2.02	1.4	1.61	7.39	10.17	11.87
Merged-chr9-40750393-1	chr9	40749893	40750893	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-50880.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.15	4.61	1.85	8.77	4.2	3.22	5.28	2.21	1.25
Merged-chr10-44511219-1	chr10	44510719	44511719	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52471.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	7.44	4.61	11.1	9.45	3.27	3.22	9.51	3.98	8.74
Merged-chr16-91081683-2	chr16	91081186	91082186	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12541.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	5.72	5.07	5.55	1.35	0.93	1.61	4.22	2.65	1.25
Merged-chr9-110871154-1	chr9	110870654	110871654	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146260, intron 3 of 5)	intron (NM_146260, intron 3 of 5)	8929.0	NM_146260	20776.0	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	2.86	1.38	3.7	4.72	1.87	0.0	1.06	0.44	0.0
Merged-chr12-110485359-2	chr12	110484866	110485866	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_012023)	promoter-TSS (NM_012023)	-373.0	NM_001081457	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	191.64	262.19	175.74	157.21	193.6	162.37	181.66	229.93	114.91
Merged-chr3-95818140-1	chr3	95817640	95818640	+	747.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	813.0	NM_001081293	75137.0	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	91.53	82.94	78.62	81.64	78.37	132.63	109.84	118.94	88.06
Merged-chr5-66299136-3	chr5	66298633	66299633	+	747.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001201413, exon 17 of 17)	3' UTR (NM_001201413, exon 17 of 17)	38292.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	18.88	20.27	14.8	22.27	13.53	11.25	34.85	35.82	17.49
Merged-chr2-102765075-3	chr2	102764577	102765577	+	747.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 8 of 10)	intron (NM_001077514, intron 8 of 10)	-18317.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	17.16	5.99	6.47	8.1	1.4	4.82	4.22	6.63	4.37
Merged-chr1-97688952-3	chr1	97688437	97689437	+	747.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26919.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	8.58	2.3	1.85	6.75	1.4	7.23	3.17	3.98	3.75
Merged-chr6-15728506-2	chr6	15728000	15729000	+	747.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	7839.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	93.82	111.97	65.67	136.97	104.5	79.58	130.97	137.07	64.95
Merged-chr15-95800299-3	chr15	95799796	95800796	+	747.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	Lx8|LINE|L1	9453.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	92.67	92.62	56.42	108.63	80.24	99.67	69.71	110.1	77.44
Merged-chr9-20978933-3	chr9	20978430	20979430	+	747.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2137.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	44.62	23.96	45.32	31.71	32.19	44.21	36.97	41.12	43.72
Merged-chr18-10869606-3	chr18	10869097	10870097	+	747.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-84045.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	8.58	13.82	0.0	8.1	12.6	8.84	11.62	14.59	7.49
Merged-chr4-140159793-3	chr4	140159295	140160295	+	747.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198610, intron 1 of 9)	ORR1E|LTR|ERVL-MaLR	16922.0	NR_153821	102636673.0	Mm.449180	NR_153821		Gm13029	Gm33676	predicted gene 13029	ncRNA	14.87	17.51	13.87	2.7	4.2	4.82	22.18	24.32	18.11
Merged-chr1-89577175-3	chr1	89576655	89577655	+	747.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	106737.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	16.02	15.21	16.65	21.59	12.6	6.43	9.51	14.15	6.25
Merged-chr11-80137033-2	chr11	80136537	80137537	+	747.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183275, exon 4 of 4)	exon (NM_183275, exon 4 of 4)	5116.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	8.01	17.51	12.95	23.62	14.46	15.27	19.01	18.57	6.25
Merged-chr7-98787100-1	chr7	98786600	98787600	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	-48012.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.86	0.46	4.62	8.77	0.0	1.61	3.17	2.65	2.5
Merged-chr4-28424566-3	chr4	28424070	28425070	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-388561.0	NM_001290434	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	3.43	3.69	1.85	6.75	8.86	12.86	2.11	0.88	5.62
Merged-chr2-167716146-3	chr2	167715623	167716623	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24946.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	37.18	31.79	46.25	58.03	38.25	47.42	39.08	38.47	24.36
Merged-chr5-113015027-3	chr5	113014575	113015575	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	463.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	115.55	70.5	95.27	94.46	59.25	69.93	105.62	42.45	49.34
Merged-chr17-26647333-3	chr17	26646844	26647844	+	747.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-29052.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	52.06	35.02	25.9	56.68	42.92	42.6	41.19	27.86	33.72
Merged-chr3-37693591-1	chr3	37693091	37694091	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30769.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	8.01	5.53	7.4	7.42	13.53	23.31	5.28	3.1	9.37
Merged-chr15-84829579-1	chr15	84829079	84830079	+	747.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	25520.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	6.29	2.3	9.25	2.7	0.0	4.82	1.06	0.0	2.5
Merged-chrY-90739005-1	chrY	90738505	90739505	+	747.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16045.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	1.14	1.38	1.85	3.37	1.87	0.0	12.67	4.86	52.46
Merged-chr9-96536434-3	chr9	96535941	96536941	+	747.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-57766.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	49.2	56.22	34.22	60.05	69.51	70.73	59.15	68.98	49.34
Merged-chr9-110652505-3	chr9	110652023	110653023	+	747.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1638.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	10.87	15.67	1.85	18.22	6.53	19.29	17.96	7.52	18.74
Merged-chr5-21129771-3	chr5	21129282	21130282	+	747.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46497.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	62.35	48.38	25.9	47.9	34.99	25.72	69.71	52.62	39.35
Merged-chr3-116191585-3	chr3	116191066	116192066	+	747.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61878.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	18.88	21.2	30.52	20.92	14.46	20.09	23.24	25.65	11.24
Merged-chr19-34445825-2	chr19	34445334	34446334	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29301.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	29.75	31.33	6.47	18.89	27.99	22.51	29.57	43.77	9.37
Merged-chr13-113591006-2	chr13	113590466	113591466	+	747.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27598.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	213.38	178.78	113.77	337.36	244.92	205.77	242.92	302.0	144.27
Merged-chr2-75792095-1	chr2	75791595	75792595	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-40082.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	78.37	81.1	79.55	97.16	74.64	65.91	140.47	137.96	63.7
Merged-chr7-114144162-1	chr7	114143662	114144662	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-26381.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	2.29	2.3	4.62	26.31	10.26	8.04	5.28	0.88	5.0
Merged-chr8-126483192-1	chr8	126482692	126483692	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8127.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.44	5.07	1.85	6.07	0.47	1.61	1.06	3.54	1.25
Merged-chr1-5020495-2	chr1	5019981	5020981	+	747.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-942.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	5.15	2.76	1.85	4.72	3.73	6.43	0.0	1.77	3.75
Merged-chr5-124049009-2	chr5	124048521	124049521	+	747.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16761.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	20.02	18.43	21.27	33.06	18.66	34.56	28.52	32.72	23.11
Merged-chr11-83556504-3	chr11	83556011	83557011	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22125.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	15.45	5.07	7.4	14.17	5.6	11.25	11.62	2.21	3.75
Merged-chr17-87550842-3	chr17	87550329	87551329	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85150.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	8.58	7.83	12.02	23.62	14.93	17.68	10.56	4.86	11.24
Merged-chr2-126713159-3	chr2	126712662	126713662	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5834.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	56.63	56.68	58.27	53.98	47.58	49.83	66.54	67.21	34.35
Merged-chr9-90013477-3	chr9	90012978	90013978	+	747.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357743, intron 23 of 26)	intron (NM_001357743, intron 23 of 26)	-40789.0	NM_007801	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	15.45	11.52	7.4	18.22	7.93	8.04	12.67	11.05	16.86
Merged-chr18-67542708-3	chr18	67542207	67543207	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194355, intron 2 of 14)	intron (NM_194355, intron 2 of 14)	6466.0	NM_176832	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	3.43	2.76	3.7	4.05	2.33	4.82	5.28	0.44	5.0
Merged-chr17-35214807-3	chr17	35214336	35215336	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9485.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	66.93	33.18	33.3	69.5	29.39	37.78	35.91	33.6	38.1
Merged-chr2-170347507-3	chr2	170346986	170347986	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001164369, exon 12 of 12)	3' UTR (NM_001164369, exon 12 of 12)	-8875.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	8.01	10.6	6.47	16.19	7.93	10.45	5.28	13.71	8.12
Merged-chr11-72221545-3	chr11	72221051	72222051	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5959.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	15.45	5.53	7.4	6.07	4.2	11.25	12.67	3.98	2.5
Merged-chr7-141381605-3	chr7	141380994	141381994	+	747.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10666.0	NM_011528	21351.0	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	16.59	11.06	34.22	17.54	8.4	17.68	21.12	9.73	10.62
Merged-chr7-89415926-2	chr7	89415440	89416440	+	747.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10366.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	2.86	7.37	9.25	3.37	6.06	4.82	1.06	0.88	7.49
Merged-chr8-82398294-2	chr8	82397791	82398791	+	747.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	intron (NM_001254747, intron 1 of 7)	4295.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	81.8	80.64	74.92	74.22	53.18	57.07	128.85	70.3	54.96
Merged-chr14-57718454-2	chr14	57717947	57718947	+	747.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 2 of 7)	ORR1B1|LTR|ERVL-MaLR	15971.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	5.72	3.69	5.55	3.37	3.73	7.23	8.45	6.63	7.49
Merged-chr13-46062944-3	chr13	46062446	46063446	+	747.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97955.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	1.14	5.99	9.25	7.42	5.13	3.22	4.22	4.42	8.74
Merged-chr10-8362310-3	chr10	8361805	8362805	+	747.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	156520.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	11.44	6.45	9.25	12.82	7.93	4.02	12.67	6.63	8.12
Merged-chr9-56101232-3	chr9	56100719	56101719	+	747.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	11243.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	11.44	24.42	7.4	22.94	21.46	18.49	21.12	13.27	11.24
Merged-chr7-55910578-2	chr7	55910084	55911084	+	747.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	intron (NM_011370, intron 22 of 30)	51909.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	153.88	223.02	132.27	188.25	111.03	186.48	197.51	277.24	156.13
Merged-chrX-8091097-3	chrX	8090592	8091592	+	747.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009515)	promoter-TSS (NM_009515)	-601.0	NM_009515	22376.0	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	76.66	109.67	71.22	76.24	68.58	92.44	102.45	111.87	63.08
Merged-chr4-127041429-3	chr4	127040914	127041914	+	747.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	19740.0	NM_026670	68310.0	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	30.89	56.68	37.92	34.41	25.66	24.92	55.98	69.42	42.47
Merged-chr4-143288606-2	chr4	143288094	143289094	+	747.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010329, intron 1 of 5)	intron (NM_010329, intron 1 of 5)	10970.0	NM_010329	14726.0	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	E11|Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	6.86	5.99	2.77	10.12	3.27	12.86	3.17	0.0	8.12
Merged-chr7-75794466-2	chr7	75793940	75794940	+	747.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-53898.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	15.45	11.98	22.2	6.75	13.53	11.25	25.35	16.8	18.74
Merged-chr17-5187687-3	chr17	5187174	5188174	+	747.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	192600.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	10.87	11.52	12.95	8.1	7.46	13.66	13.73	9.29	13.74
Merged-chr18-67569297-3	chr18	67568788	67569788	+	747.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16567.0	NM_194355	68166.0	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	12.01	14.28	3.7	10.12	7.93	11.25	13.73	7.96	8.74
Merged-chr12-103494677-1	chr12	103494177	103495177	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-37454.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	2.86	3.23	0.0	1.35	1.87	0.0	3.17	1.77	2.5
Merged-chr4-55327752-1	chr4	55327252	55328252	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22290.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	6.86	4.15	3.7	3.37	5.6	8.04	2.11	8.84	6.25
Merged-chr9-40812061-1	chr9	40811561	40812561	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	10788.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	8.58	6.45	6.47	15.52	4.67	6.43	13.73	3.98	5.0
Merged-chr1-80615612-2	chr1	80615093	80616093	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	49759.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	38.33	55.75	22.2	49.25	41.99	62.7	71.82	58.81	37.47
Merged-chr8-119807956-2	chr8	119807439	119808439	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29523.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	12.01	7.37	12.02	12.82	6.06	8.04	7.39	4.42	7.49
Merged-chr9-104576323-1	chr9	104575823	104576823	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	6840.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	9.15	17.97	12.95	13.49	16.79	12.06	4.22	2.21	2.5
Merged-chr16-30733920-1	chr16	30733420	30734420	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134197.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.0	2.3	2.77	1.35	0.47	0.0	2.11	1.33	2.5
Merged-chr8-70903263-2	chr8	70902780	70903780	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2694.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	12.59	11.52	12.95	11.47	5.6	32.96	15.84	11.94	14.36
Merged-chr6-90714918-1	chr6	90714418	90715418	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	1611.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	21.17	23.96	30.52	14.17	14.0	43.4	19.01	22.11	21.23
Merged-chr1-136394698-1	chr1	136394198	136395198	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20573.0	NM_026500	67997.0	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	4.58	1.84	3.7	5.4	1.4	1.61	1.06	1.77	1.25
Merged-chr8-11050020-1	chr8	11049520	11050520	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046017, intron 2 of 4)	intron (NR_046017, intron 2 of 4)	-41590.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.58	3.69	9.25	2.02	2.8	7.23	3.17	0.0	1.25
Merged-chr9-70879015-1	chr9	70878515	70879515	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	55793.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	8.01	5.07	3.7	4.72	4.67	0.0	4.22	4.42	1.25
Merged-chr12-80792127-6	chr12	80791564	80792564	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	RSINE1|SINE|B4	1532.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	213.95	209.66	148.92	139.67	111.96	94.04	212.29	221.08	111.79
Merged-chr16-84985586-1	chr16	84985086	84986086	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	ORR1E|LTR|ERVL-MaLR	13375.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	4.0	5.53	10.17	6.75	5.13	12.06	9.51	3.1	6.25
Merged-chr6-115602495-1	chr6	115601995	115602995	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023290, intron 1 of 7)	intron (NM_023290, intron 1 of 7)	557.0	NM_023290	67027.0	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	90.96	94.46	46.25	98.51	86.3	63.5	91.89	91.97	44.97
Merged-chr15-6425522-1	chr15	6425022	6426022	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19811.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	8.01	9.22	5.55	10.8	9.8	5.63	10.56	8.4	6.87
Merged-chr6-89257570-1	chr6	89257070	89258070	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie8|DNA|hAT-Charlie	28155.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	197.93	221.18	123.02	213.89	202.46	174.42	163.71	203.4	133.65
Merged-chr19-34195899-1	chr19	34195399	34196399	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	2965.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	42.33	57.14	35.15	41.16	39.19	35.37	59.15	57.48	39.35
Merged-chr2-142699108-1	chr2	142698608	142699608	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	202356.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	77.23	73.26	37.0	77.59	59.25	61.09	105.62	127.34	78.07
Merged-chr12-84163148-1	chr12	84162648	84163648	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 3 of 12)	intron (NM_001163501, intron 3 of 12)	-14659.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	2.86	6.91	0.0	5.4	2.8	1.61	4.22	6.63	5.0
Merged-chr14-64725402-1	chr14	64724902	64725902	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 8 of 39)	LTR67B|LTR|ERVL	72871.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	6.29	8.75	13.87	8.77	3.73	8.04	10.56	3.1	5.0
Merged-chr12-111302170-2	chr12	111301684	111302684	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183016, exon 28 of 37)	exon (NM_183016, exon 28 of 37)	31088.0	NM_033603	93835.0	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	4.0	3.23	3.7	3.37	2.8	4.82	2.11	2.21	2.5
Merged-chr5-76525888-2	chr5	76525417	76526417	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3390.0	NM_001359372	69940.0	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	18.88	41.01	58.27	19.57	28.92	41.8	33.8	31.84	39.35
Merged-chr6-108405400-1	chr6	108404900	108405900	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010585, exon 34 of 62)	exon (NM_010585, exon 34 of 62)	-84343.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	8.58	5.53	9.25	14.17	7.0	10.45	7.39	5.75	5.0
Merged-chr7-100931658-1	chr7	100931158	100932158	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081116, exon 1 of 21)	exon (NM_001081116, exon 1 of 21)	503.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	5.15	0.92	3.7	4.72	3.27	0.0	2.11	2.21	0.62
Merged-chr4-123565800-1	chr4	123565300	123566300	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-50620.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	38.33	63.59	34.22	43.86	41.52	44.21	53.87	65.0	44.97
Merged-chr13-85287947-1	chr13	85287447	85288447	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 1 of 24)	intron (NM_145452, intron 1 of 24)	1539.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	57.78	92.62	46.25	51.95	56.45	82.79	67.6	85.34	73.07
Merged-chr8-94397516-3	chr8	94397026	94398026	+	747.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-B4-int|LTR|ERVL	11097.0	NM_022331	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	5.72	5.99	3.7	2.7	3.73	6.43	1.06	3.54	8.74
Merged-chr7-101617081-2	chr7	101616638	101617638	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-35977.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	47.48	54.37	55.5	60.72	47.12	43.4	116.18	134.86	63.08
Merged-chr5-147913922-1	chr5	147913422	147914422	+	747.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19107.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	8.58	3.69	11.1	6.07	2.33	4.82	12.67	10.17	12.49
Merged-chr6-134771365-1	chr6	134770865	134771865	+	747.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	L1Md_F2|LINE|L1	-20995.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	6.29	6.91	5.55	6.07	2.33	1.61	4.22	4.86	1.25
Merged-chr3-19694162-3	chr3	19693669	19694669	+	746.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_205769, exon 2 of 2)	exon (NM_205769, exon 2 of 2)	1227.0	NM_205769	12918.0	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	6.29	2.3	5.55	2.7	4.67	0.0	1.06	0.0	0.0
Merged-chr18-36525679-3	chr18	36525188	36526188	+	746.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2464.0	NM_172830	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	5.15	3.23	4.62	5.4	0.47	6.43	7.39	3.1	8.12
Merged-chr9-66888137-2	chr9	66887643	66888643	+	746.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	31562.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	89.24	85.25	93.42	106.61	64.84	65.11	74.99	62.79	47.46
Merged-chr10-69351312-2	chr10	69350821	69351821	+	746.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007659, intron 1 of 7)	MTC|LTR|ERVL-MaLR	1591.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	21.74	22.12	14.8	16.19	12.13	24.11	27.46	26.09	16.24
Merged-chr16-78317040-2	chr16	78316542	78317542	+	746.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	B3A|SINE|B2	15371.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	4.58	0.0	1.85	2.7	1.4	1.61	2.11	0.44	3.75
Merged-chr12-8494917-3	chr12	8494478	8495478	+	746.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5031.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	5.72	6.91	3.7	6.75	3.73	8.04	6.34	2.21	5.0
Merged-chr17-28429011-3	chr17	28428511	28429511	+	746.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010220, intron 4 of 10)	intron (NM_010220, intron 4 of 10)	57138.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	31.46	33.64	15.72	41.16	26.12	42.6	44.36	42.89	26.85
Merged-chr10-98775514-3	chr10	98775015	98776015	+	746.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139127.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	174.48	153.44	82.32	152.49	87.24	114.14	103.51	105.24	108.04
Merged-chr18-26740459-2	chr18	26739954	26740954	+	746.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-986297.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	1.72	1.84	1.85	4.72	6.06	4.82	4.22	3.1	3.75
Merged-chr4-59043212-2	chr4	59042695	59043695	+	746.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8039.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	16.59	17.97	22.2	13.49	6.06	12.86	8.45	4.86	7.49
Merged-chr1-82927333-2	chr1	82926839	82927839	+	746.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	87879.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	5.15	1.38	3.7	7.42	4.2	4.82	8.45	10.61	9.37
Merged-chr8-13887994-2	chr8	13887501	13888501	+	746.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359059, intron 1 of 2)	intron (NM_001359059, intron 1 of 2)	2270.0	NM_001359059	66423.0	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	4.0	1.84	3.7	4.05	0.47	1.61	1.06	1.33	1.25
Merged-chr18-75469254-2	chr18	75468757	75469757	+	746.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	ORR1F|LTR|ERVL-MaLR	-45388.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	14.3	16.13	22.2	12.14	6.06	14.47	12.67	7.96	11.87
Merged-chr15-17604499-2	chr15	17603962	17604962	+	746.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	765165.0	NR_045711	70886.0	Mm.399021	NR_045711	ENSMUSG00000098150	4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	5.72	3.69	3.7	3.37	4.67	8.04	2.11	7.07	3.75
Merged-chr2-38658578-2	chr2	38658054	38659054	+	746.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14648.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	1.72	1.84	1.85	2.7	0.47	1.61	2.11	0.88	2.5
Merged-chr13-107855728-3	chr13	107855227	107856227	+	746.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	MTC|LTR|ERVL-MaLR	34337.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	56.63	53.45	41.62	55.33	30.79	36.97	61.26	80.47	43.09
Merged-chr13-58205188-3	chr13	58204678	58205678	+	746.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 1 of 10)	intron (NM_026842, intron 1 of 10)	10475.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	8.58	9.22	11.1	9.45	6.53	6.43	9.51	6.19	12.49
Merged-chr8-92772562-1	chr8	92772062	92773062	+	746.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1I|LTR|ERVL-MaLR	-54735.0	NM_008610	17390.0	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	16.02	7.37	5.55	12.82	6.06	6.43	3.17	3.1	3.75
Merged-chr2-118896371-2	chr2	118895849	118896849	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5266.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	6.86	2.3	0.92	5.4	1.87	8.84	0.0	0.0	3.75
Merged-chr10-96606137-1	chr10	96605637	96606637	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10864.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.44	7.37	4.62	12.14	3.27	1.61	10.56	3.98	3.75
Merged-chr17-86903783-2	chr17	86903288	86904288	+	746.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13560.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	4.0	4.15	7.4	4.72	5.6	1.61	6.34	2.65	2.5
Merged-chr18-5592715-3	chr18	5592192	5593192	+	746.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033552)	promoter-TSS (NR_033552)	45.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	13.16	4.61	3.7	8.77	3.73	4.02	5.28	1.77	2.5
Merged-chrX-7776898-1	chrX	7776398	7777398	+	746.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	12857.0	NM_001271491	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	11.44	10.6	3.7	24.29	7.0	21.7	13.73	6.63	3.75
Merged-chr11-88099143-3	chr11	88098636	88099636	+	746.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198013)	promoter-TSS (NM_198013)	-10.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	5.15	0.46	7.4	6.07	1.87	1.61	2.11	1.77	2.5
Merged-chr2-19276376-3	chr2	19275820	19276820	+	746.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081083, intron 10 of 19)	intron (NM_001081083, intron 10 of 19)	-67997.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	20.59	17.05	19.42	20.24	8.86	5.63	9.51	4.86	6.87
Merged-chr8-25256117-3	chr8	25255608	25256608	+	746.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50162.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	1.72	2.76	0.0	4.72	0.93	0.0	6.34	0.88	0.0
Merged-chr2-79050862-2	chr2	79050351	79051351	+	746.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181173.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	11.44	19.81	12.95	17.54	15.86	14.47	14.79	15.48	13.74
Merged-chr6-72051956-1	chr6	72051456	72052456	+	746.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9428.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	7.44	2.3	4.62	11.47	5.6	4.82	2.11	3.1	3.75
Merged-chr4-35061114-2	chr4	35060601	35061601	+	746.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	MT2B1|LTR|ERVL	-90954.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	9.72	5.53	3.7	1.35	4.67	1.61	1.06	1.77	4.37
Merged-chr2-153342786-2	chr2	153342295	153343295	+	746.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040318, exon 2 of 2)	non-coding (NR_040318, exon 2 of 2)	3015.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	4.0	8.75	8.32	14.17	10.26	8.84	6.34	9.29	5.62
Merged-chr18-34502676-2	chr18	34502164	34503164	+	746.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146084, intron 1 of 20)	intron (NM_146084, intron 1 of 20)	4159.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	20.02	31.79	34.22	24.29	27.06	32.15	34.85	30.07	23.73
Merged-chr12-102719795-3	chr12	102719291	102720291	+	746.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14922.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	9.15	9.22	11.1	7.42	4.67	1.61	4.22	4.86	1.25
Merged-chr7-80370225-3	chr7	80369723	80370723	+	746.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172903, intron 2 of 23)	intron (NM_172903, intron 2 of 23)	1152.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	42.33	49.3	48.1	73.54	67.64	73.95	129.91	97.28	32.48
Merged-chr11-79674457-2	chr11	79673967	79674967	+	746.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045898, exon 2 of 3)	non-coding (NR_045898, exon 2 of 3)	619.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	12.01	6.91	15.72	6.75	7.93	6.43	14.79	6.19	11.87
Merged-chr11-21096662-2	chr11	21096190	21097190	+	746.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	Lx8|LINE|L1	-2179.0	NR_151470	108167888.0		NR_151470		2610024D14Rik	-	ATP synthase subunit g, mitochondrial pseudogene	pseudo	14.87	14.28	34.22	29.01	20.53	20.09	15.84	14.59	18.74
Merged-chr8-125240770-3	chr8	125240311	125241311	+	746.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 11 of 12)	B3A|SINE|B2	186616.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	7.44	7.83	9.25	12.82	2.8	1.61	7.39	4.42	1.25
Merged-chr13-112186597-1	chr13	112186097	112187097	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-101854.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	1.72	0.0	7.4	5.4	0.93	0.0	3.17	2.21	2.5
Merged-chr3-121842417-1	chr3	121841917	121842917	+	746.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27115.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	35.47	33.64	11.1	35.76	21.46	17.68	51.75	38.47	32.48
Merged-chr6-125243819-2	chr6	125243330	125244330	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-6803.0	NM_001286753	21940.0	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	9.72	5.07	6.47	8.77	3.73	4.82	2.11	3.1	1.25
Merged-chr18-13787638-2	chr18	13787143	13788143	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185090.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	16.02	16.13	7.4	13.49	14.0	9.65	13.73	11.5	7.49
Merged-chr4-136469086-2	chr4	136468596	136469596	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024452)	promoter-TSS (NM_024452)	-665.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	36.61	22.58	49.95	31.04	30.79	32.15	11.62	11.5	17.49
Merged-chr4-133338770-1	chr4	133338270	133339270	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199306, intron 1 of 15)	intron (NM_199306, intron 1 of 15)	545.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	84.09	72.8	59.2	91.76	89.57	73.14	64.43	40.68	24.36
Merged-chr11-61104494-2	chr11	61104004	61105004	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	-36331.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	2.86	5.07	1.85	1.35	4.67	8.04	2.11	3.1	6.25
Merged-chr9-25261189-2	chr9	25260687	25261687	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	8295.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	8.01	9.22	3.7	12.14	8.4	10.45	21.12	11.94	15.61
Merged-chr18-66467397-2	chr18	66466914	66467914	+	746.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	8810.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	88.67	81.56	107.29	112.68	79.31	106.1	101.39	101.26	77.44
Merged-chr3-38885663-1	chr3	38885163	38886163	+	746.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1277.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	8.01	0.92	0.0	2.02	0.93	0.0	4.22	1.77	1.25
Merged-chr4-59253136-3	chr4	59252612	59253612	+	746.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6939.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	55.49	51.15	12.02	64.1	48.05	40.19	42.25	42.01	37.47
Merged-chr9-64222284-3	chr9	64221776	64222776	+	746.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008927, intron 1 of 10)	intron (NM_008927, intron 1 of 10)	-12925.0	NM_033607	93841.0	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	6.86	12.9	13.87	6.75	12.13	12.86	15.84	7.07	8.12
Merged-chr19-42520009-3	chr19	42519522	42520522	+	746.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	1217.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	30.32	24.88	16.65	11.47	12.6	12.06	20.07	26.53	14.36
Merged-chr1-165768504-3	chr1	165768066	165769066	+	746.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	intron (NR_149310, intron 2 of 4)	4808.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	70.93	44.24	43.47	77.59	51.32	84.4	64.43	46.43	46.84
Merged-chr1-55404664-2	chr1	55404162	55405162	+	746.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1284.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	12.01	10.14	3.7	4.72	13.06	19.29	6.34	8.4	3.75
Merged-chr11-113787399-3	chr11	113786930	113787930	+	746.388855	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172800, intron 44 of 44)	intron (NM_172800, intron 44 of 44)	-35615.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.72	2.76	0.0	13.49	4.67	4.02	31.69	30.51	24.98
Merged-chr1-54898839-3	chr1	54898345	54899345	+	746.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	27542.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	13.16	21.66	24.05	14.17	14.93	23.31	8.45	9.73	9.99
Merged-chr13-55754477-2	chr13	55753976	55754976	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028281, intron 2 of 3)	intron (NM_028281, intron 2 of 3)	27108.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	5.72	5.53	7.4	11.47	5.13	9.65	4.22	5.75	5.0
Merged-chr12-26425236-2	chr12	26424737	26425737	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-9975.0	NM_080563	108089.0	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	24.6	33.64	32.37	26.99	30.79	30.54	5.28	0.88	5.0
Merged-chr11-84522816-2	chr11	84522305	84523305	+	746.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008498, intron 1 of 4)	CpG	2729.0	NM_008498	16869.0	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	4.0	4.61	12.95	3.37	5.13	4.82	5.28	2.21	1.87
Merged-chr2-166750816-2	chr2	166750309	166751309	+	746.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36977.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	4.58	7.83	9.25	17.54	6.53	8.04	15.84	18.57	2.5
Merged-chr16-11288387-2	chr16	11287861	11288861	+	746.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25448.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	5.15	5.07	5.55	2.7	2.8	6.43	7.39	5.31	13.12
Merged-chr18-88981065-3	chr18	88980573	88981573	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175542, intron 7 of 48)	intron (NM_175542, intron 7 of 48)	9043.0	NR_105777	102466633.0		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	3.43	2.3	1.85	6.75	0.93	0.0	2.11	1.77	4.37
Merged-chr3-122169803-1	chr3	122169303	122170303	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 44 of 49)	intron (NM_007378, intron 44 of 49)	-75754.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.43	1.38	2.77	4.05	0.47	6.43	2.11	2.65	2.5
Merged-chr3-53041425-1	chr3	53040925	53041925	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-122.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	7.44	2.3	0.92	2.7	1.87	6.43	2.11	0.44	3.75
Merged-chr12-80760675-3	chr12	80760159	80761159	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008423)	promoter-TSS (NM_001008423)	56.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	6.29	5.99	1.85	3.37	1.87	3.22	3.17	3.54	1.87
Merged-chr6-122545467-1	chr6	122544967	122545967	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8342.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	7.44	2.3	1.85	2.7	1.87	0.0	3.17	0.44	2.5
Merged-chrUn_GL456387-15421-1	chrUn_GL456387	14921	15921	+	746.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr		Intergenic											0.0	0.0	0.0	0.0	0.0	0.0	6.34	2.65	0.0
Merged-chr2-73371276-1	chr2	73370776	73371776	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	15204.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	33.75	34.56	19.42	31.04	34.52	44.21	27.46	32.72	24.36
Merged-chr10-67297681-3	chr10	67297150	67298150	+	746.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12369.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	40.62	36.4	19.42	39.81	40.59	37.78	39.08	46.43	31.23
Merged-chr7-71873103-1	chr7	71872603	71873603	+	746.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36592.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	13.16	19.35	26.82	15.52	23.79	26.53	7.39	1.77	5.0
Merged-chr1-135375216-4	chr1	135374766	135375766	+	746.285706	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175259)	promoter-TSS (NM_175259)	-203.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	6.29	5.53	1.85	8.77	5.13	5.63	5.28	4.86	5.0
Merged-chr5-143731710-3	chr5	143731226	143732226	+	746.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029749, intron 1 of 17)	CpG	554.0	NM_029749	76800.0	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	141.87	91.7	139.67	120.1	52.72	79.58	135.19	90.64	58.71
Merged-chr4-109665308-3	chr4	109664780	109665780	+	746.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007671)	promoter-TSS (NM_007671)	92.0	NM_007671	12580.0	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin dependent kinase inhibitor 2C	protein-coding	38.9	66.35	20.35	35.09	37.32	41.8	64.43	72.52	43.09
Merged-chr3-87804184-1	chr3	87803684	87804684	+	746.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011832, exon 6 of 22)	exon (NM_011832, exon 6 of 22)	7233.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	3.43	1.84	0.0	2.7	2.33	3.22	5.28	6.63	5.62
Merged-chr5-75979326-1	chr5	75978826	75979826	+	746.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010612)	promoter-TSS (NM_010612)	-898.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	4.0	0.0	0.92	2.02	1.4	0.0	2.11	0.88	0.0
Merged-chr10-70199980-3	chr10	70199471	70200471	+	746.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-4693.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	26.89	40.55	36.07	26.99	34.06	25.72	44.36	36.7	27.48
Merged-chr11-20103896-3	chr11	20103404	20104404	+	746.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146243, intron 1 of 8)	L1MA5A|LINE|L1	9047.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	26.31	26.73	23.12	27.66	23.79	24.92	38.02	34.49	19.36
Merged-chr6-50601845-1	chr6	50601345	50602345	+	746.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5255.0	NM_027564	70821.0	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	2.86	5.07	1.85	2.7	2.8	0.8	3.17	1.77	1.25
Merged-chr19-6262407-3	chr19	6261910	6262910	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194348)	TTS (NM_194348)	-2233.0	NR_029830	723957.0		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	6.86	4.61	0.0	16.87	2.8	3.22	4.22	2.65	1.25
Merged-chr7-16932168-3	chr7	16931706	16932706	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8174.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	7.44	4.15	0.0	0.67	5.6	0.0	4.22	1.33	0.62
Merged-chr18-75740800-3	chr18	75740293	75741293	+	746.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43097.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.57	0.46	0.0	0.67	0.47	0.0	2.11	4.86	2.5
Merged-chr12-25282726-3	chr12	25282223	25283223	+	746.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153549.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	50.34	51.15	58.27	53.98	41.05	65.91	50.7	57.04	26.23
Merged-chr1-16225600-3	chr1	16225099	16226099	+	746.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119717.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	24.6	27.65	22.2	20.92	13.06	30.54	6.34	16.36	20.61
Merged-chr18-73839774-3	chr18	73839281	73840281	+	746.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19604.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	8.58	9.68	18.5	12.14	10.26	4.02	12.67	9.29	9.99
Merged-chr3-105674808-3	chr3	105674294	105675294	+	746.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039347)	TTS (NM_001039347)	12777.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	7.44	4.15	9.25	6.07	2.33	1.61	0.0	0.88	0.0
Merged-chr11-47199253-3	chr11	47198756	47199756	+	746.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011891, intron 2 of 7)	intron (NM_011891, intron 2 of 7)	180046.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	9.15	5.07	5.55	8.77	8.86	4.82	9.51	4.86	5.62
Merged-chr4-150586448-1	chr4	150585948	150586948	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	65726.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	57.78	47.92	42.55	54.65	48.05	39.39	92.94	89.76	36.22
Merged-chr14-101529415-1	chr14	101528915	101529915	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	79776.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	5.15	3.69	1.85	12.82	3.27	5.63	3.17	1.77	0.0
Merged-chr11-61764940-1	chr11	61764440	61765440	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-2852.0	NM_001164243	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	8.58	6.45	9.25	13.49	17.26	17.68	9.51	9.73	12.49
Merged-chr6-7857052-1	chr6	7856552	7857552	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	RMER20C_Mm|LTR|ERVK	11828.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	2.86	3.69	7.4	4.72	4.2	3.22	6.34	1.77	1.87
Merged-chr11-73131238-3	chr11	73130758	73131758	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361245, intron 22 of 30)	intron (NM_001361245, intron 22 of 30)	7036.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	22.88	21.66	16.65	23.62	11.2	19.29	17.96	15.03	8.74
Merged-chr11-116694666-2	chr11	116694140	116695140	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009180)	promoter-TSS (NM_009180)	20.0	NM_009180	20446.0	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	20.02	12.9	19.42	26.99	12.13	12.86	1.06	2.65	6.25
Merged-chr2-148498720-1	chr2	148498220	148499220	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55185.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	24.03	16.13	26.82	6.75	10.26	16.08	9.51	5.31	14.99
Merged-chr9-57835133-3	chr9	57834613	57835613	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019689)	promoter-TSS (NM_019689)	-879.0	NM_019689	56380.0	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	8.58	8.75	14.8	8.1	5.6	6.43	20.07	9.73	7.49
Merged-chr13-101680324-1	chr13	101679824	101680824	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001077495)	TTS (NM_001077495)	12306.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.86	6.91	3.7	6.07	5.6	3.22	6.34	3.98	6.87
Merged-chr1-153386920-1	chr1	153386420	153387420	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27313.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	2.86	2.3	1.85	3.37	0.0	0.0	4.22	1.33	0.0
Merged-chr6-136693521-2	chr6	136693028	136694028	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31635.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	12.01	9.22	5.55	10.8	4.67	8.84	6.34	4.42	5.0
Merged-chr11-78345110-2	chr11	78344511	78345511	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313988)	promoter-TSS (NM_001313988)	-573.0	NM_001313988	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	27.46	39.63	27.75	20.24	17.73	37.78	32.74	42.89	41.84
Merged-chr10-59235795-1	chr10	59235295	59236295	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13873.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	174.48	176.48	127.64	211.86	166.08	187.28	242.92	285.2	113.04
Merged-chr16-33776930-1	chr16	33776430	33777430	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17107.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	3.43	8.75	3.7	12.14	3.73	6.43	21.12	8.4	7.49
Merged-chr8-75030717-1	chr8	75030217	75031217	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001316753, exon 12 of 12)	3' UTR (NM_001316753, exon 12 of 12)	-2969.0	NM_001136259	21968.0	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	10.3	15.21	17.57	16.87	11.2	17.68	12.67	13.71	6.87
Merged-chr15-41613149-1	chr15	41612649	41613649	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	164046.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	84.66	64.97	26.82	74.89	39.19	33.76	45.42	39.8	24.98
Merged-chr5-43103219-1	chr5	43102719	43103719	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-130244.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	13.73	9.68	0.92	12.14	7.46	9.65	8.45	2.65	2.5
Merged-chr1-54835966-1	chr1	54835466	54836466	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	90421.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	10.87	8.75	8.32	14.84	9.8	20.9	11.62	3.98	7.49
Merged-chr7-116606880-2	chr7	116606374	116607374	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	102505.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	35.47	26.73	20.35	27.66	14.46	40.99	29.57	25.2	19.98
Merged-chr5-35563614-1	chr5	35563114	35564114	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030208, intron 9 of 10)	intron (NM_030208, intron 9 of 10)	11456.0	NM_030208	78890.0	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	4.0	4.15	7.4	2.7	0.93	3.22	5.28	0.88	3.75
Merged-chr3-132103624-1	chr3	132103124	132104124	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	18332.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	6.29	4.15	0.0	6.07	4.2	20.09	3.17	7.07	10.62
Merged-chr15-9710533-1	chr15	9710033	9711033	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305042, intron 9 of 36)	ORR1F|LTR|ERVL-MaLR	38335.0	NM_177123	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.58	5.07	1.85	3.37	4.2	1.61	4.22	0.88	0.62
Merged-chr5-5897935-1	chr5	5897435	5898435	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148618.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.57	0.92	0.0	2.02	3.27	3.22	2.11	2.65	6.25
Merged-chr16-13232767-1	chr16	13232267	13233267	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-23714.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	6.29	3.69	7.4	3.37	2.8	1.61	2.11	1.77	4.37
Merged-chr3-117979346-1	chr3	117978846	117979846	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-110410.0	NM_029655	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	4.58	5.07	1.85	1.35	6.53	0.0	3.17	3.54	3.75
Merged-chr13-49214566-1	chr13	49214066	49215066	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026738, intron 1 of 5)	intron (NM_026738, intron 1 of 5)	1460.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	21.17	17.51	9.25	14.17	11.66	17.68	22.18	8.4	6.25
Merged-chr1-157413183-1	chr1	157412683	157413683	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-588.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	14.3	24.42	22.2	31.04	20.99	28.13	31.69	22.55	23.11
Merged-chr3-28007838-1	chr3	28007338	28008338	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	23667.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	7.44	6.91	1.85	8.1	4.67	3.22	7.39	4.42	12.49
Merged-chr4-118296019-1	chr4	118295519	118296519	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4622.0	NM_011213	19268.0	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	1.14	0.46	0.92	3.37	0.47	4.02	1.06	1.33	2.5
Merged-chr15-58416850-1	chr15	58416350	58417350	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	1382.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	63.5	83.4	39.77	61.4	48.98	50.64	68.65	67.21	36.22
Merged-chr5-31001216-1	chr5	31000716	31001716	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32539.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	5.72	0.92	1.85	4.05	3.73	3.22	10.56	10.17	8.74
Merged-chr5-29735039-3	chr5	29734560	29735560	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011847)	promoter-TSS (NM_011847)	-838.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	152.17	204.59	104.52	177.45	173.54	123.78	165.82	178.64	89.93
Merged-chr14-27367704-1	chr14	27367204	27368204	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 3 of 10)	intron (NM_027871, intron 3 of 10)	6315.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	4.58	5.53	7.4	2.02	3.73	9.65	13.73	14.59	7.49
Merged-chr1-172335416-2	chr1	172334942	172335942	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5768.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	290.03	227.63	159.09	277.31	192.67	189.69	118.29	114.96	58.71
Merged-chr12-8947388-1	chr12	8946888	8947888	+	746.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010770)	promoter-TSS (NM_010770)	-541.0	NM_010770	17182.0	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	10.87	10.6	5.55	13.49	14.0	9.65	15.84	15.48	11.24
Merged-chr7-118279177-1	chr7	118278677	118279677	+	746.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35270.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	42.33	71.88	68.45	36.43	45.25	59.48	63.37	62.79	64.33
Merged-chr4-150066866-1	chr4	150066366	150067366	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1588.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	1.72	8.29	12.95	9.45	8.86	5.63	6.34	5.31	1.25
Merged-chr10-95265046-1	chr10	95264546	95265546	+	746.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	58663.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	61.78	73.26	40.7	95.14	75.57	71.54	83.44	68.09	49.34
Merged-chr11-83221597-3	chr11	83221090	83222090	+	745.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1986.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	16.02	27.65	9.25	20.24	14.0	20.09	12.67	21.67	9.37
Merged-chr15-76381071-3	chr15	76380615	76381615	+	745.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175457, intron 1 of 43)	intron (NM_175457, intron 1 of 43)	602.0	NM_175457	223658.0	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	100.11	100.91	51.8	145.74	208.06	86.81	113.01	91.53	39.97
Merged-chr2-167695796-3	chr2	167695352	167696352	+	745.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	4675.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	44.62	20.27	60.12	20.92	29.86	25.72	36.97	32.28	20.61
Merged-chr2-44980488-5	chr2	44980008	44981008	+	745.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42669.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	9.15	11.52	11.1	8.77	7.0	17.68	3.17	4.86	9.99
Merged-chr11-89069464-2	chr11	89068945	89069945	+	745.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4396.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	4.58	3.69	1.85	7.42	2.33	1.61	2.11	2.21	4.37
Merged-chr15-35681878-2	chr15	35681360	35682360	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177151, intron 33 of 61)	intron (NM_177151, intron 33 of 61)	-20813.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	12.01	5.07	5.55	10.12	1.87	16.88	8.45	12.38	9.37
Merged-chr8-106364446-2	chr8	106363944	106364944	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	-26456.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	3.43	2.3	0.0	2.7	2.33	1.61	5.28	3.98	4.37
Merged-chr6-17595874-2	chr6	17595374	17596374	+	745.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41136.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	21.74	15.21	9.25	8.77	13.06	8.04	10.56	9.29	22.48
Merged-chr1-46087258-2	chr1	46086761	46087761	+	745.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160386, intron 6 of 65)	intron (NM_001160386, intron 6 of 65)	20523.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.57	1.84	7.4	3.37	5.6	7.23	5.28	2.21	3.75
Merged-chr17-34317452-2	chr17	34316963	34317963	+	745.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010382)	TTS (NM_010382)	-8212.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	5.15	6.91	4.62	6.07	3.73	7.23	8.45	1.77	9.37
Merged-chr15-59076481-3	chr15	59075973	59076973	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	5553.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	7.44	5.99	9.25	16.19	5.13	16.88	5.28	7.96	2.5
Merged-chr12-99297945-2	chr12	99297454	99298454	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	MLT1A|LTR|ERVL-MaLR	-135146.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	8.01	13.36	4.62	7.42	8.4	5.63	8.45	3.1	3.75
Merged-chr7-43512215-3	chr7	43511692	43512692	+	745.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6254.0	NM_028737	74054.0	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	21.17	15.21	7.4	8.1	6.06	8.04	14.79	11.05	12.49
Merged-chr5-79812248-2	chr5	79811755	79812755	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MURVY-int|LTR|ERV1	-1208316.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.29	0.92	5.55	3.37	0.93	1.61	7.39	0.44	1.25
Merged-chrX-9520188-1	chrX	9519688	9520688	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50864.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	2.29	0.0	3.7	0.0	0.0	3.22	3.17	0.0	1.25
Merged-chr3-146498845-2	chr3	146498334	146499334	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316756, intron 1 of 14)	B3A|SINE|B2	919.0	NM_001316756	70951.0	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	78.37	100.91	71.22	89.06	86.77	77.16	96.11	113.19	63.7
Merged-chr3-25713366-1	chr3	25712866	25713866	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357095, intron 4 of 6)	RLTR26|LTR|ERVK	440620.0	NM_001163387	192167.0	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	1.14	4.15	5.55	2.7	5.6	3.22	3.17	3.54	2.5
Merged-chr5-32007026-2	chr5	32006517	32007517	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 9 of 11)	MIRb|SINE|MIR	-129455.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	9.15	9.68	4.62	10.12	10.26	6.43	7.39	5.31	7.49
Merged-chr11-51059316-2	chr11	51058817	51059817	+	745.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347495)	promoter-TSS (NM_001347495)	60.0	NM_001347495	21408.0	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	5.15	2.76	0.92	12.82	7.93	4.82	7.39	3.98	3.75
Merged-chr1-157013193-3	chr1	157012683	157013683	+	745.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73557.0	NM_001357391	78255.0	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	41.76	46.08	59.2	124.82	75.57	75.56	31.69	34.93	28.1
Merged-chr12-21266664-1	chr12	21266164	21267164	+	745.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 26 of 26)	intron (NM_001004364, intron 26 of 26)	19620.0	NM_008403	16413.0	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	10.87	3.69	7.4	3.37	1.87	10.45	3.17	1.33	5.0
Merged-chr16-23383104-1	chr16	23382604	23383604	+	745.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46029.0	NM_001004151	239766.0	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	9.15	5.53	7.4	7.42	6.53	4.82	6.34	4.86	7.49
Merged-chr8-109458227-2	chr8	109457745	109458745	+	745.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35782.0	NM_019938	56523.0	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	56.06	62.21	60.12	42.51	82.11	73.14	67.6	44.22	43.72
Merged-chr11-108378240-3	chr11	108377720	108378720	+	745.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17077.0	NM_013475	11818.0	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	8.01	6.91	3.7	10.12	5.6	0.0	3.17	5.31	1.25
Merged-chr9-120491682-2	chr9	120491190	120492190	+	745.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026892)	promoter-TSS (NM_026892)	-916.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	7.44	10.6	5.55	6.75	6.06	12.86	11.62	5.31	1.87
Merged-chrX-139616197-3	chrX	139615696	139616696	+	745.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023270, intron 1 of 6)	intron (NM_023270, intron 1 of 6)	5576.0	NM_023270	66889.0	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	6.86	7.37	3.7	12.82	10.73	8.04	22.18	25.2	16.24
Merged-chr5-81156895-3	chr5	81156382	81157382	+	745.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	intron (NM_198702, intron 2 of 27)	135289.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	6.29	2.76	5.55	2.7	5.13	0.8	0.0	4.86	3.75
Merged-chr1-118389932-3	chr1	118389425	118390425	+	745.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359330, intron 1 of 39)	intron (NM_001359330, intron 1 of 39)	867.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	30.89	42.39	40.7	31.71	41.05	40.19	42.25	46.43	38.72
Merged-chr7-3720384-2	chr7	3719882	3720882	+	745.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011095)	promoter-TSS (NM_011095)	0.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	19.45	25.34	24.97	0.0	0.0	0.0	31.69	32.28	18.11
Merged-chr6-33929900-3	chr6	33929349	33930349	+	745.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-99599.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	7.44	6.91	13.87	4.05	4.2	4.02	7.39	8.4	5.0
Merged-chr1-168431513-2	chr1	168431002	168432002	+	745.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291509, exon 1 of 7)	exon (NM_001291509, exon 1 of 7)	667.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	6.86	14.28	7.4	24.96	14.0	13.66	16.9	22.55	9.37
Merged-chr7-80375583-3	chr7	80375104	80376104	+	745.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4229.0	NM_172903	140481.0	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	10.87	8.75	11.1	9.45	6.53	17.68	10.56	8.84	9.37
Merged-chr16-90924866-3	chr16	90924364	90925364	+	745.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026502)	TTS (NM_026502)	9985.0	NM_026502	68001.0	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	10.3	8.29	7.4	12.82	9.33	16.88	7.39	4.86	7.49
Merged-chr4-122853295-2	chr4	122852795	122853795	+	745.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	17068.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	98.97	100.45	72.15	109.3	77.91	74.75	92.94	92.41	79.94
Merged-chr4-129585357-3	chr4	129584787	129585787	+	745.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6707.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	14.87	2.76	11.1	8.1	6.53	11.25	26.4	28.74	21.86
Merged-chr15-67172870-3	chr15	67172364	67173364	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	4018.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	52.63	54.83	55.5	51.28	35.92	53.05	44.36	41.12	29.98
Merged-chr3-108855018-2	chr3	108854517	108855517	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14515.0	NM_011504	20912.0	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	97.25	79.25	24.97	45.21	16.33	11.25	72.88	52.18	28.1
Merged-chr7-83643576-2	chr7	83643074	83644074	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001360089, exon 7 of 7)	3' UTR (NM_001360089, exon 7 of 7)	11557.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	29.17	27.65	23.12	22.94	19.59	32.15	21.12	11.05	24.36
Merged-chr19-60942029-1	chr19	60941529	60942529	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	52280.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	12.59	17.05	12.95	9.45	7.93	25.72	5.28	6.63	13.12
Merged-chr8-61907344-2	chr8	61906844	61907844	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4650.0	NM_001293772	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.15	9.22	9.25	6.07	7.46	1.61	6.34	11.94	4.37
Merged-chr9-32034219-1	chr9	32033719	32034719	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81917.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	5.15	5.53	1.85	10.8	3.27	4.82	6.34	3.1	2.5
Merged-chr5-111028544-1	chr5	111028044	111029044	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	24400.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	8.01	10.6	9.25	6.75	7.93	8.04	5.28	2.65	5.0
Merged-chr10-96239082-1	chr10	96238582	96239582	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110448, intron 1 of 2)	intron (NR_110448, intron 1 of 2)	12875.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	8.58	0.92	1.85	6.75	7.0	1.61	1.06	6.19	3.75
Merged-chr7-67431198-2	chr7	67430689	67431689	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58331.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	13.73	20.27	23.12	25.64	20.99	45.01	17.96	21.67	29.98
Merged-chr12-4133518-2	chr12	4133073	4134073	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138305)	promoter-TSS (NM_138305)	176.0	NM_001159536	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	21.74	15.67	24.05	24.96	28.46	34.56	12.67	1.77	8.74
Merged-chr9-24376799-2	chr9	24376301	24377301	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	126339.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	3.43	3.23	5.55	6.75	6.06	4.82	4.22	1.77	3.75
Merged-chr11-75458203-1	chr11	75457703	75458703	+	745.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3336.0	NR_030711	100042498.0	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	136.72	96.3	103.59	161.93	70.91	119.76	128.85	114.96	89.93
Merged-chr2-150784488-2	chr2	150783934	150784934	+	745.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2362.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	14.87	18.43	8.32	12.82	6.53	6.43	5.28	7.96	11.87
Merged-chr12-3737205-1	chr12	3736705	3737705	+	745.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-69775.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	44.62	35.94	12.95	57.35	44.78	29.74	47.53	61.46	12.49
Merged-chr15-93251754-3	chr15	93251241	93252241	+	745.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033275, intron 4 of 7)	intron (NM_001033275, intron 4 of 7)	23438.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	104.11	114.27	102.67	73.54	61.58	55.46	38.02	41.12	26.85
Merged-chr5-139288072-3	chr5	139287605	139288605	+	745.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	34608.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	109.26	78.79	164.64	72.19	49.45	133.43	124.63	84.45	73.69
Merged-chr4-32229497-1	chr4	32228997	32229997	+	745.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-187938.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	8.01	7.83	12.95	14.17	11.2	17.68	16.9	5.31	9.99
Merged-chr10-44565317-3	chr10	44564845	44565845	+	745.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-106597.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	9.15	10.14	11.1	14.17	7.93	9.65	10.56	5.31	11.24
Merged-chr1-185364244-2	chr1	185363761	185364761	+	745.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357474, intron 1 of 32)	intron (NM_001357474, intron 1 of 32)	1217.0	NM_001357474	107508.0	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	69.79	68.2	16.65	53.3	44.32	21.7	43.3	21.67	25.61
Merged-chr5-32104332-2	chr5	32103844	32104844	+	745.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32128.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.86	2.76	1.85	3.37	2.8	3.22	5.28	0.88	3.75
Merged-chr13-114376712-3	chr13	114376211	114377211	+	745.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010887, intron 1 of 4)	L1MD2|LINE|L1	11383.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	41.19	27.19	70.3	16.87	9.8	18.49	46.47	30.95	33.1
Merged-chr4-105747927-3	chr4	105747428	105748428	+	745.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-493285.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	18.31	31.79	18.5	37.78	23.79	34.56	21.12	14.59	14.99
Merged-chr5-122207930-2	chr5	122207436	122208436	+	745.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1793.0	NM_001042489	74096.0	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	4.58	3.23	1.85	5.4	5.13	6.43	4.22	0.88	1.87
Merged-chr16-55731108-1	chr16	55730608	55731608	+	745.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91030.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	34.32	40.55	34.22	41.16	46.18	31.35	23.24	32.28	14.36
Merged-chr15-84325328-3	chr15	84324828	84325828	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162500)	promoter-TSS (NM_001162500)	608.0	NM_022321	64099.0	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	89.24	73.73	78.62	122.12	132.49	65.11	191.17	163.6	49.34
Merged-chr11-59226440-3	chr11	59225964	59226964	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	1698.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	127.57	121.19	69.37	115.38	125.02	86.81	109.84	149.01	59.33
Merged-chr1-84533369-1	chr1	84532869	84533869	+	745.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 5 of 12)	intron (NM_152915, intron 5 of 12)	-162470.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	9.15	2.76	3.7	11.47	11.2	9.65	9.51	7.07	12.49
Merged-chr2-11599652-3	chr2	11599137	11600137	+	745.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 2 of 11)	intron (NM_152824, intron 2 of 11)	3562.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	61.21	75.57	57.35	52.63	52.25	57.87	94.0	89.76	48.71
Merged-chr9-45243115-3	chr9	45242600	45243600	+	745.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 3 of 4)	intron (NM_001198971, intron 3 of 4)	23607.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	50.34	62.21	64.75	56.68	26.12	76.36	51.75	42.01	29.98
Merged-chr11-100548279-3	chr11	100547788	100548788	+	745.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 1 of 11)	intron (NM_028918, intron 1 of 11)	2656.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	48.05	40.09	42.55	49.93	30.32	66.71	80.27	81.8	36.85
Merged-chr8-22814470-2	chr8	22813961	22814961	+	745.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8807.0	NM_001122820	64933.0	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	2.86	5.07	1.85	13.49	8.4	25.72	10.56	3.98	5.0
Merged-chr5-135951192-2	chr5	135950696	135951696	+	745.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16555.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	13.16	10.14	7.4	16.87	11.66	10.45	7.39	8.4	10.62
Merged-chr5-66259952-3	chr5	66259422	66260422	+	745.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027602)	promoter-TSS (NM_027602)	24.0	NM_001302834	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	8.01	1.84	1.85	4.05	2.8	4.02	8.45	5.31	0.0
Merged-chr14-14602123-3	chr14	14601615	14602615	+	745.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100910.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	17.73	11.06	16.65	17.54	7.46	9.65	11.62	9.29	7.49
Merged-chr11-95869682-3	chr11	95869148	95870148	+	745.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008081, intron 7 of 10)	intron (NM_008081, intron 7 of 10)	10831.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	24.03	12.9	15.72	19.57	11.66	11.25	30.63	19.46	7.49
Merged-chr8-85800378-3	chr8	85799890	85800890	+	745.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028007, intron 6 of 17)	intron (NM_028007, intron 6 of 17)	40559.0	NM_028007	71927.0	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	18.31	15.67	14.8	24.96	25.19	16.08	22.18	25.2	16.24
Merged-chr10-84615729-3	chr10	84615234	84616234	+	745.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6703.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	19.45	15.67	14.8	15.52	23.79	38.58	26.4	19.01	21.23
Merged-chr19-45030685-4	chr19	45030094	45031094	+	745.170837	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	MIRb|SINE|MIR	12459.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	17.73	9.68	8.32	21.59	7.93	7.23	11.62	5.75	8.12
Merged-chr19-8989571-3	chr19	8989094	8990094	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039959, intron 1 of 5)	CpG	310.0	NM_001286518	66395.0	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	10.87	6.45	0.0	8.77	10.73	4.82	12.67	3.54	2.5
Merged-chr4-12275411-3	chr4	12274895	12275895	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-103380.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	14.3	11.06	17.57	16.87	14.93	22.51	9.51	9.73	13.74
Merged-chr17-31558194-3	chr17	31557735	31558735	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-6538.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	37.76	52.99	65.67	57.35	53.65	77.97	64.43	65.0	44.97
Merged-chr12-8667669-3	chr12	8667189	8668189	+	745.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6445.0	NM_001160221	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	18.88	10.14	7.4	15.52	15.39	14.47	9.51	12.38	5.0
Merged-chr9-99009769-2	chr9	99009292	99010292	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080776, intron 6 of 7)	B4A|SINE|B4	23419.0	NM_001122851	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	42.33	63.13	12.95	56.68	65.31	16.88	47.53	81.8	8.12
Merged-chr9-118737341-2	chr9	118736829	118737829	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	25637.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	18.31	8.75	12.95	16.87	9.8	29.74	8.45	5.31	6.25
Merged-chr12-25089620-2	chr12	25089115	25090115	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6477.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	4.58	1.38	9.25	5.4	0.93	0.0	6.34	2.21	5.0
Merged-chr3-65523559-2	chr3	65523053	65524053	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4894.0	NM_178892	99929.0	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	6.29	7.83	3.7	4.72	1.87	1.61	7.39	7.96	6.87
Merged-chr8-35826527-2	chr8	35826028	35827028	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027998)	promoter-TSS (NM_027998)	31.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	8.01	7.83	6.47	4.05	0.47	1.61	5.28	0.0	5.62
Merged-chr9-13761166-2	chr9	13760668	13761668	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_024025, intron 1 of 15)	ID_B1|SINE|B4	11987.0	NM_023858	77116.0	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	10.3	12.9	4.62	14.84	7.0	12.06	17.96	6.19	9.99
Merged-chr4-105213427-2	chr4	105212919	105213919	+	745.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 4 of 5)	intron (NM_080555, intron 4 of 5)	56072.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.29	1.38	6.47	5.4	1.87	1.61	0.0	0.0	1.25
Merged-chr13-43806899-2	chr13	43806387	43807387	+	745.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21775.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	6.29	3.23	6.47	3.37	5.13	1.61	2.11	3.1	4.37
Merged-chr5-115556315-3	chr5	115555826	115556826	+	745.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133915)	TTS (NM_133915)	-3141.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	10.3	11.06	4.62	9.45	11.66	14.47	5.28	4.86	21.86
Merged-chr2-93333618-3	chr2	93333145	93334145	+	745.116638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183180, intron 1 of 9)	CpG	842.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	11.44	2.76	11.1	16.87	3.73	12.86	7.39	5.75	2.5
Merged-chr6-31033231-3	chr6	31032743	31033743	+	745.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B2|LTR|ERVL	29504.0	NR_029744	387222.0		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	1.72	0.46	0.0	4.05	2.33	1.61	3.17	1.77	1.87
Merged-chr12-17253229-3	chr12	17252729	17253729	+	745.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-13366.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	5.15	4.61	1.85	2.02	1.87	0.0	2.11	0.88	2.5
Merged-chr9-119064526-2	chr9	119064022	119065022	+	745.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011700, intron 11 of 18)	intron (NM_011700, intron 11 of 18)	11744.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	6.29	5.53	7.4	7.42	7.46	4.82	20.07	22.99	23.11
Merged-chr15-85710387-3	chr15	85709893	85710893	+	745.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3074.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	4.0	0.46	0.92	2.02	2.33	0.8	2.11	1.33	1.87
Merged-chr15-38693360-2	chr15	38692849	38693849	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025494)	TTS (NM_025494)	31445.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	7.44	3.69	7.4	4.72	5.6	8.04	6.34	7.52	5.0
Merged-chr5-3212937-1	chr5	3212437	3213437	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-130956.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	15.45	11.06	19.42	11.47	9.33	34.56	13.73	11.05	11.87
Merged-chr3-122394122-1	chr3	122393622	122394622	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25635.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.0	3.23	7.4	7.42	8.4	4.82	4.22	1.33	6.25
Merged-chr8-121909919-2	chr8	121909416	121910416	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033485, intron 1 of 1)	intron (NM_001033485, intron 1 of 1)	2083.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	3.43	1.38	0.0	2.7	1.87	3.22	4.22	2.65	0.62
Merged-chr5-22896012-1	chr5	22895512	22896512	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359998, intron 1 of 3)	intron (NM_001359998, intron 1 of 3)	-149128.0	NR_027362	330052.0	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	20.02	5.53	9.25	5.4	2.33	3.22	9.51	11.5	13.12
Merged-chr3-21983186-1	chr3	21982686	21983686	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-93466.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.15	4.61	1.85	6.75	6.06	3.22	4.22	7.96	3.75
Merged-chr1-54826074-1	chr1	54825574	54826574	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 2 of 27)	intron (NM_001081433, intron 2 of 27)	100313.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	8.01	4.61	3.7	8.1	10.73	14.47	5.28	0.88	5.0
Merged-chr2-145122315-1	chr2	145121815	145122815	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-45460.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	0.0	10.8	8.4	9.65	2.11	1.77	0.0
Merged-chr9-101037354-1	chr9	101036854	101037854	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2470.0	NM_025835	66904.0	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	30.89	37.78	19.42	31.04	33.59	56.27	28.52	22.55	18.74
Merged-chr1-133025923-1	chr1	133025423	133026423	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302803)	promoter-TSS (NM_001302803)	-507.0	NM_001302801	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	70.36	122.11	71.22	78.27	119.89	98.87	87.66	120.27	78.07
Merged-chr4-135763896-1	chr4	135763396	135764396	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085509, intron 3 of 36)	intron (NM_001085509, intron 3 of 36)	4181.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	16.59	6.45	4.62	13.49	13.06	4.82	13.73	11.5	7.49
Merged-chr4-88698976-3	chr4	88698498	88699498	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7730.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	38.33	58.52	20.35	35.09	30.79	36.17	34.85	25.2	25.61
Merged-chr6-116077888-1	chr6	116077388	116078388	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-82883.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	13.73	8.29	13.87	16.87	11.2	15.27	4.22	6.19	0.0
Merged-chr14-22801979-1	chr14	22801479	22802479	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	(T)n|Simple_repeat|Simple_repeat	-259181.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	44.05	36.4	16.65	32.39	43.85	29.74	29.57	32.72	15.61
Merged-chr12-81780742-1	chr12	81780242	81781242	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177395, exon 1 of 8)	exon (NM_177395, exon 1 of 8)	428.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	11.44	5.07	14.8	22.94	8.86	14.47	17.96	5.31	8.74
Merged-chrX-49281340-1	chrX	49280840	49281840	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	intron (NM_001271449, intron 2 of 15)	6902.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	13.16	23.04	24.97	20.24	19.13	17.68	33.8	31.39	28.73
Merged-chr12-79135083-1	chr12	79134583	79135583	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	4295.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	6.29	13.36	11.1	66.12	41.05	100.47	13.73	8.4	7.49
Merged-chr19-41051890-1	chr19	41051390	41052390	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001043228, intron 8 of 10)	intron (NM_001043228, intron 8 of 10)	22615.0	NM_009345	21673.0	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	5.72	2.76	3.7	6.75	2.33	6.43	4.22	6.63	1.25
Merged-chr1-173491282-1	chr1	173490782	173491782	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44675.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.57	0.46	0.0	5.4	2.8	0.8	45.42	54.39	16.86
Merged-chr9-20467212-2	chr9	20466690	20467690	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR55|LTR|ERVL?	-7030.0	NM_001357809	22688.0	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	4.0	5.07	1.85	4.05	4.2	3.22	4.22	1.33	1.25
Merged-chr6-4811450-1	chr6	4810950	4811950	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64144.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	9.15	2.76	3.7	1.35	0.93	3.22	3.17	3.1	5.0
Merged-chr9-47772902-2	chr9	47772355	47773355	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	45353.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	14.3	11.98	9.25	21.59	10.26	12.06	10.56	7.52	13.12
Merged-chr3-131862265-1	chr3	131861765	131862765	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-223027.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.86	5.07	3.7	9.45	7.93	2.41	24.29	17.69	26.85
Merged-chr14-117761287-1	chr14	117760787	117761787	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	X1_LINE|LINE|CR1	192560.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	4.0	3.23	2.77	3.37	4.67	3.22	5.28	1.77	0.0
Merged-chr11-4594320-2	chr11	4593823	4594823	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	CpG	492.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	187.06	181.09	158.17	182.17	161.88	141.47	268.27	180.4	133.65
Merged-chr18-46162042-1	chr18	46161542	46162542	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	36776.0	NM_001170855	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	5.72	3.23	7.4	4.05	2.8	0.0	5.28	6.19	13.74
Merged-chr1-151039393-2	chr1	151038888	151039888	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-45953.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	26.31	31.79	26.82	41.83	33.12	50.64	57.03	47.75	36.85
Merged-chrX-134582406-1	chrX	134581906	134582906	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	734.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	36.61	40.09	19.42	47.23	44.32	52.25	55.98	75.17	36.22
Merged-chr1-180901271-2	chr1	180900762	180901762	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3012.0	NM_133705	69051.0	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	12.01	5.07	3.7	4.05	2.8	0.0	3.17	2.65	7.49
Merged-chr14-61294793-1	chr14	61294293	61295293	+	745.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033788, exon 2 of 3)	non-coding (NR_033788, exon 2 of 3)	10541.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	3.43	2.3	1.85	6.07	1.4	8.04	7.39	3.54	1.25
Merged-chr13-12210479-3	chr13	12209962	12210962	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 22 of 32)	intron (NM_001081128, intron 22 of 32)	-23974.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	6.86	5.07	10.17	8.77	6.53	1.61	4.22	3.54	5.0
Merged-chr10-88503648-1	chr10	88503148	88504148	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001146690, exon 1 of 9)	exon (NM_001146690, exon 1 of 9)	322.0	NR_027477	212862.0	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	37.76	20.74	21.27	33.74	25.66	27.33	22.18	20.34	8.74
Merged-chr1-40266067-1	chr1	40265567	40266567	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001123382)	promoter-TSS (NM_001123382)	-519.0	NM_001123382	16177.0	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	2.29	1.84	1.85	4.72	2.33	3.22	1.06	1.33	1.25
Merged-chr8-126863928-1	chr8	126863428	126864428	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	14908.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	15.45	13.36	7.4	11.47	10.73	30.54	15.84	11.94	16.24
Merged-chr16-33996322-2	chr16	33995824	33996824	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 51 of 59)	intron (NM_177357, intron 51 of 59)	-29286.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.0	4.61	5.55	4.05	4.67	2.41	5.28	4.42	2.5
Merged-chr2-131083029-1	chr2	131082529	131083529	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011426, intron 5 of 20)	intron (NM_011426, intron 5 of 20)	3736.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	10.87	5.99	7.4	8.77	6.06	11.25	20.07	9.73	21.23
Merged-chr4-129067764-3	chr4	129067270	129068270	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	intron (NM_029219, intron 1 of 8)	9499.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	115.55	107.82	87.87	105.93	87.24	77.16	109.84	135.3	78.69
Merged-chr4-86657788-1	chr4	86657288	86658288	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 7 of 7)	intron (NM_007408, intron 7 of 7)	12271.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	9.15	13.82	18.5	24.29	20.99	36.97	32.74	35.37	18.11
Merged-chr3-56575586-2	chr3	56575097	56576097	+	745.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-391896.0	NM_030595	26422.0	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	1.14	2.3	0.0	0.67	1.87	4.02	3.17	1.33	1.25
Merged-chr12-102461298-1	chr12	102460798	102461798	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7836.0	NM_001199004	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	10.3	10.6	8.32	7.42	5.6	9.65	14.79	17.69	11.87
Merged-chr1-150405644-1	chr1	150405144	150406144	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133780, intron 7 of 51)	intron (NM_133780, intron 7 of 51)	-12564.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	7.44	8.75	7.4	8.77	8.86	9.65	10.56	8.84	3.75
Merged-chr9-13467266-1	chr9	13466766	13467766	+	745.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35905.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	57.78	73.26	67.52	43.18	45.72	48.23	39.08	51.29	27.48
Merged-chr6-108408347-3	chr6	108407875	108408875	+	744.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-81368.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.15	6.91	3.7	10.8	9.33	6.43	9.51	8.4	3.12
Merged-chr10-85502396-3	chr10	85501909	85502909	+	744.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-96002.0	NM_001017525	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	6.29	2.3	4.62	6.75	3.73	3.22	33.8	17.24	14.99
Merged-chr6-136979510-3	chr6	136979087	136980087	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	25064.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	8.58	5.07	1.85	7.42	8.86	4.82	11.62	12.38	1.25
Merged-chr5-125052362-3	chr5	125051847	125052847	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	48872.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	22.88	8.75	23.12	16.19	14.0	11.25	4.22	6.63	2.5
Merged-chr13-23685664-3	chr13	23685093	23686093	+	744.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001290380)	TTS (NM_001290380)	1394.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	109.83	102.75	69.37	93.11	103.56	81.99	120.41	164.49	100.55
Merged-chr13-99306382-3	chr13	99305880	99306880	+	744.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38298.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	12.01	4.61	3.7	5.4	2.8	3.22	7.39	4.86	8.74
Merged-chr13-49108624-3	chr13	49108115	49109115	+	744.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	39713.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	1.14	2.76	0.0	1.35	4.2	4.82	10.56	3.1	6.25
Merged-chr6-129211550-2	chr6	129211037	129212037	+	744.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26508.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	12.01	16.59	27.75	12.14	12.13	7.23	13.73	18.57	17.49
Merged-chr9-108843112-3	chr9	108842611	108843611	+	744.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001359573, exon 25 of 36)	exon (NM_001359573, exon 25 of 36)	-10932.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	5.15	1.84	6.47	4.72	3.27	1.61	6.34	4.42	2.5
Merged-chr7-44590793-3	chr7	44590350	44591350	+	744.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290682)	promoter-TSS (NM_001290682)	-36.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	2.86	0.0	1.85	1.35	2.33	1.61	1.06	0.44	2.5
Merged-chr13-113553793-3	chr13	113553292	113554292	+	744.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-50948.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.72	1.84	3.7	4.05	4.67	2.41	4.22	5.75	2.5
Merged-chr1-26688147-2	chr1	26687634	26688634	+	744.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-674.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	12.59	9.68	25.9	6.75	14.93	15.27	10.56	6.19	6.25
Merged-chr19-34800042-2	chr19	34799566	34800566	+	744.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20707.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	6.86	6.45	9.25	3.37	9.33	7.23	5.28	3.1	8.74
Merged-chr10-125274605-2	chr10	125274117	125275117	+	744.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 3 of 5)	intron (NM_001358496, intron 3 of 5)	34199.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	11.44	11.06	9.25	13.49	11.66	6.43	11.62	13.27	7.49
Merged-chr11-115058905-1	chr11	115058405	115059405	+	744.833313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172050, intron 1 of 3)	intron (NM_172050, intron 1 of 3)	3134.0	NM_172050	217306.0	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	129.28	117.04	91.57	12.14	7.46	12.06	17.96	9.29	14.36
Merged-chr15-60823842-2	chr15	60823332	60824332	+	744.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162926, exon 2 of 2)	exon (NM_001162926, exon 2 of 2)	867.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	35.47	36.4	16.65	62.07	57.38	22.51	31.69	30.51	3.75
Merged-chr18-80729512-3	chr18	80729003	80730003	+	744.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16432.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	2.29	1.84	0.0	2.7	2.33	0.0	3.17	0.0	5.0
Merged-chr4-141663129-3	chr4	141662652	141663652	+	744.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	PB1D10|SINE|Alu	963.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	163.61	196.29	143.37	132.24	166.08	120.57	195.39	214.89	128.03
Merged-chr8-126588022-3	chr8	126587482	126588482	+	744.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164598)	TTS (NM_001164598)	5454.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	78.94	76.49	79.55	85.01	67.18	37.78	87.66	75.61	38.1
Merged-chr4-25273415-2	chr4	25272929	25273929	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026194, intron 6 of 18)	L1MC4|LINE|L1	8392.0	NM_026194	67490.0	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	8.01	11.98	11.1	18.22	16.33	17.68	12.67	9.29	11.24
Merged-chr10-7598355-1	chr10	7597855	7598855	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172784, intron 2 of 6)	L3b|LINE|CR1	8555.0	NM_001359743	237253.0	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	5.15	0.92	1.85	7.42	3.73	9.65	3.17	4.86	5.0
Merged-chr3-30862083-2	chr3	30861581	30862581	+	744.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	intron (NM_001286994, intron 1 of 3)	6131.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	21.74	14.28	11.1	8.77	11.2	32.96	11.62	14.15	10.62
Merged-chr17-36431617-3	chr17	36431121	36432121	+	744.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30708.0	NM_177634	224753.0	Mm.246581	NM_177634	ENSMUSG00000048231	H2-M10.4	15H	histocompatibility 2, M region locus 10.4	protein-coding	5.72	1.38	3.7	3.37	2.8	3.22	7.39	2.21	2.5
Merged-chr16-30602879-2	chr16	30602372	30603372	+	744.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177632)	TTS (NM_177632)	3149.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	34.9	39.17	26.82	34.41	24.26	37.78	35.91	30.95	18.74
Merged-chr1-156454584-1	chr1	156454084	156455084	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	19744.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	40.62	58.52	57.35	41.16	51.78	66.71	21.12	23.43	23.11
Merged-chr13-105340993-3	chr13	105340481	105341481	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46496.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.0	3.23	11.1	7.42	7.0	4.82	0.0	6.63	3.75
Merged-chr15-78826775-3	chr15	78826291	78827291	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15856.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	2.86	3.23	1.85	2.7	2.33	3.22	2.11	2.65	2.5
Merged-chr13-68605855-1	chr13	68605355	68606355	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027035, intron 1 of 2)	GA-rich|Low_complexity|Low_complexity	8416.0	NM_027035	69315.0	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	4.58	1.38	5.55	2.7	0.47	1.61	1.06	1.33	5.0
Merged-chr17-24667539-1	chr17	24667039	24668039	+	744.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2148.0	NM_001348231	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	5.72	3.23	1.85	3.37	2.33	3.22	1.06	7.52	7.49
Merged-chr2-118545369-3	chr2	118544885	118545885	+	744.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_138603)	promoter-TSS (NR_138603)	-798.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	13.73	14.75	13.87	19.57	9.8	13.66	14.79	14.59	28.1
Merged-chr10-67597744-2	chr10	67597223	67598223	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25764.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	105.83	113.35	83.25	192.29	123.62	132.63	142.59	141.05	54.96
Merged-chr18-9841272-2	chr18	9840764	9841764	+	744.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 3 of 9)	intron (NM_130449, intron 3 of 9)	-116916.0	NM_153552	225160.0	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	4.58	3.23	6.47	14.84	5.13	3.22	0.0	3.54	2.5
Merged-chr14-76702249-2	chr14	76701739	76702739	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24671.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	4.58	4.61	5.55	4.72	2.33	1.61	1.06	2.65	5.62
Merged-chr4-150367039-2	chr4	150366521	150367521	+	744.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	85105.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	7.44	10.14	9.25	14.17	8.4	9.65	3.17	5.31	8.12
Merged-chr15-80671595-2	chr15	80671090	80672090	+	744.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145986)	promoter-TSS (NM_145986)	-257.0	NM_145986	213956.0	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	6.29	1.84	5.55	7.42	3.73	0.0	14.79	2.21	4.37
Merged-chr11-17727827-2	chr11	17727327	17728327	+	744.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	226048.0	NM_026576	68145.0	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	7.44	2.3	5.55	12.14	9.8	6.43	1.06	2.65	6.25
Merged-chr10-100948679-3	chr10	100948183	100949183	+	744.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-207048.0	NR_152765	102639396.0	Mm.404529	NR_152765		Gm35722	-	predicted gene, 35722	ncRNA	5.15	5.99	12.95	6.75	6.06	6.43	6.34	6.19	1.87
Merged-chr14-25483449-3	chr14	25482948	25483948	+	744.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	24263.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	90.96	82.02	83.25	112.0	96.1	94.04	87.66	68.09	21.23
Merged-chr11-117878438-2	chr11	117877947	117878947	+	744.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4921.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	108.12	62.21	57.35	122.12	75.57	69.13	98.23	72.96	22.48
Merged-chr3-84657481-2	chr3	84656980	84657980	+	744.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8712.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	1.14	0.92	3.7	4.72	1.4	10.45	6.34	3.98	2.5
Merged-chr15-80260839-2	chr15	80260340	80261340	+	744.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175109, exon 4 of 4)	3' UTR (NM_175109, exon 4 of 4)	3466.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	13.16	3.69	9.25	4.05	3.73	14.47	4.22	6.19	2.5
Merged-chr1-63130079-3	chr1	63129589	63130589	+	744.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	ERVB7_1-LTR_MM|LTR|ERVK	15349.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	6.86	11.06	12.95	11.47	7.93	8.04	15.84	17.69	4.37
Merged-chr11-69396782-3	chr11	69396277	69397277	+	744.571411	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030083)	TTS (NM_030083)	986.0	NM_030083	78304.0	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	57.78	43.31	64.75	53.3	44.32	72.34	77.1	78.71	47.46
Merged-chr13-24338028-3	chr13	24337539	24338539	+	744.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	10635.0	NM_001111110	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	23.45	23.04	28.67	23.62	18.19	14.47	42.25	52.18	34.97
Merged-chr4-138884424-3	chr4	138883897	138884897	+	744.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6455.0	NM_012044	26970.0	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	5.72	5.07	8.32	5.4	0.93	4.02	2.11	2.21	1.25
Merged-chr5-117356008-1	chr5	117355508	117356508	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_021539	59043.0	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	18.88	7.83	5.55	16.19	8.4	8.84	11.62	7.07	1.25
Merged-chr6-146796050-2	chr6	146795545	146796545	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9485.0	NM_001289680	272322.0	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	2.29	1.84	1.85	2.7	1.87	4.02	3.17	0.88	2.5
Merged-chr2-77343394-1	chr2	77342894	77343894	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62802.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.29	1.38	1.85	2.7	2.33	0.0	1.06	2.65	1.25
Merged-chr19-10860334-1	chr19	10859834	10860834	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133804, exon 9 of 11)	exon (NM_133804, exon 9 of 11)	9445.0	NM_133804	98170.0	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	9.72	11.52	18.5	6.75	8.4	12.06	2.11	7.52	11.87
Merged-chr12-91109565-1	chr12	91109065	91110065	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030473)	promoter-TSS (NR_030473)	-664.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	7.44	2.3	0.0	7.42	0.47	0.0	5.28	4.86	5.0
Merged-chr17-34001237-2	chr17	34000745	34001745	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347346)	promoter-TSS (NM_001347346)	-898.0	NM_001347346	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	55.49	41.01	19.42	31.04	12.13	8.04	92.94	65.0	36.85
Merged-chr1-183439249-2	chr1	183438738	183439738	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19990.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	2.29	2.76	0.0	8.1	4.2	0.0	2.11	1.77	1.25
Merged-chr16-33832102-2	chr16	33831603	33832603	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	2438.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	39.47	62.67	59.2	43.18	69.98	66.71	64.43	82.69	29.98
Merged-chr17-78197345-1	chr17	78196845	78197845	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2903.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	3.43	4.15	6.47	2.7	3.27	3.22	4.22	2.65	2.5
Merged-chr19-34199142-1	chr19	34198642	34199642	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	6208.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	134.43	134.55	86.02	149.11	112.9	111.73	226.02	218.87	103.05
Merged-chr8-95488182-1	chr8	95487682	95488682	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009974, intron 1 of 11)	intron (NM_009974, intron 1 of 11)	638.0	NM_009974	13000.0	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	16.02	8.29	8.32	21.59	6.53	15.27	9.51	5.31	5.62
Merged-chr11-106158265-1	chr11	106157765	106158765	+	744.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001356459, exon 5 of 5)	3' UTR (NM_001356459, exon 5 of 5)	1662.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	15.45	12.9	16.65	8.77	6.53	19.29	24.29	8.84	14.36
Merged-chrX-155174851-1	chrX	155174351	155175351	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	-27002.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	25.17	21.2	13.87	23.62	13.06	22.51	13.73	11.5	14.36
Merged-chr1-132135834-2	chr1	132135330	132136330	+	744.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	MIRb|SINE|MIR	3855.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	6.29	0.0	4.62	4.05	1.87	0.0	3.17	1.77	5.0
Merged-chr19-46467242-2	chr19	46466713	46467713	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-34435.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.29	3.23	12.95	10.12	9.33	11.25	9.51	7.96	7.49
Merged-chr1-85962253-1	chr1	85961753	85962753	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1198.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	2.29	2.76	0.0	6.07	5.6	6.43	3.17	11.05	3.75
Merged-chr5-125363495-1	chr5	125362995	125363995	+	744.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22401.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	36.04	45.16	57.35	41.83	36.39	53.85	26.4	30.51	25.61
Merged-chr6-70806125-3	chr6	70805657	70806657	+	744.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13982.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	8.01	2.3	1.85	7.42	4.67	11.25	6.34	7.96	0.62
Merged-chrX-152352961-3	chrX	152352451	152353451	+	744.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359450, intron 1 of 1)	intron (NM_001359450, intron 1 of 1)	-10467.0	NM_001358369	52808.0	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	2.86	0.92	0.0	0.67	0.0	0.0	3.17	0.44	5.0
Merged-chr15-103347408-3	chr15	103346907	103347907	+	744.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 28 of 30)	intron (NM_001314041, intron 28 of 30)	3118.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	3.43	1.84	3.7	4.05	3.73	0.0	2.11	0.0	10.62
Merged-chr1-180771501-2	chr1	180770996	180771996	+	744.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42109.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	24.6	16.59	22.2	22.94	17.26	37.78	42.25	32.28	33.1
Merged-chr10-24645324-3	chr10	24644831	24645831	+	744.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008813, exon 24 of 25)	exon (NM_008813, exon 24 of 25)	49889.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	61.21	62.21	24.05	96.48	96.1	99.67	50.7	60.13	12.49
Merged-chr13-110747631-2	chr13	110747121	110748121	+	744.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155878.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	8.01	3.69	0.0	15.52	10.26	4.02	5.28	6.19	1.25
Merged-chr6-65671607-2	chr6	65671104	65672104	+	744.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172399)	promoter-TSS (NM_172399)	-7.0	NM_172399	68169.0	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	2.29	0.92	1.85	6.75	1.87	3.22	0.0	2.65	1.25
Merged-chr5-123155632-2	chr5	123155133	123156133	+	744.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040398, intron 7 of 16)	B3|SINE|B2	13440.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	11.44	5.53	3.7	4.72	1.4	8.04	3.17	1.33	9.37
Merged-chr2-94266112-2	chr2	94265578	94266578	+	744.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4679.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	10.87	2.76	8.32	10.8	8.4	19.29	12.67	6.19	8.12
Merged-chr5-111049796-2	chr5	111049278	111050278	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	45634.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	42.9	51.61	59.2	43.86	51.78	36.17	25.35	13.71	14.99
Merged-chr16-94245579-2	chr16	94245088	94246088	+	744.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	44703.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	144.16	146.53	81.4	163.96	164.21	108.51	165.82	199.42	81.19
Merged-chr4-129555693-2	chr4	129555211	129556211	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162432, exon 9 of 13)	exon (NM_001162432, exon 9 of 13)	2100.0	NR_106199	102465997.0		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	9.72	4.15	3.7	10.12	5.13	9.65	7.39	2.21	5.0
Merged-chr6-134994390-2	chr6	134993930	134994930	+	744.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12429.0	NM_001109914	381823.0	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	6.86	6.91	3.7	16.19	13.53	12.86	5.28	8.4	3.75
Merged-chr17-87264364-3	chr17	87263868	87264868	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	1579.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	91.53	74.65	74.92	95.14	76.51	75.56	110.9	89.76	50.59
Merged-chr18-60881494-3	chr18	60880982	60881982	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30758.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	6.29	2.76	9.25	6.07	5.6	4.02	3.17	6.19	5.0
Merged-chr7-74974655-3	chr7	74974163	74975163	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55548.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	5.72	5.07	18.5	2.02	6.53	6.43	5.28	5.31	10.62
Merged-chr6-83685796-3	chr6	83685216	83686216	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7859.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	13.16	8.75	1.85	25.64	16.33	11.25	8.45	3.98	2.5
Merged-chr16-50534070-1	chr16	50533570	50534570	+	744.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040379, intron 1 of 5)	ORR1B2|LTR|ERVL-MaLR	5568.0	NR_040379	619312.0	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	6.86	6.91	7.4	4.05	7.46	3.22	2.11	5.75	4.37
Merged-chr9-119261954-3	chr9	119261445	119262445	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 9 of 18)	intron (NM_001359582, intron 9 of 18)	-30253.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	8.58	10.14	9.25	10.8	11.2	14.47	10.56	9.29	7.49
Merged-chr13-41583809-3	chr13	41583258	41584258	+	744.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEb|LINE|L1	-22458.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	84.09	100.91	40.7	70.85	74.17	81.18	109.84	102.58	64.33
Merged-chr9-55277759-1	chr9	55277259	55278259	+	744.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	5866.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	4.58	4.15	7.4	7.42	7.93	9.65	4.22	3.98	5.62
Merged-chr3-107867238-3	chr3	107866747	107867747	+	744.327759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9983.0	NM_133867	99662.0	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	4.58	1.84	3.7	4.05	2.33	3.22	0.0	2.21	2.5
Merged-chr11-68502608-2	chr11	68502102	68503102	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081566)	promoter-TSS (NM_001081566)	-417.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	21.17	22.12	21.27	25.64	12.6	28.13	24.29	11.05	24.36
Merged-chr10-119079452-2	chr10	119078950	119079950	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13455.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	4.0	2.76	0.0	6.07	4.2	0.0	3.17	3.98	0.0
Merged-chr12-32200888-2	chr12	32200367	32201367	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146201, exon 3 of 11)	exon (NM_001146201, exon 3 of 11)	7471.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	44.62	32.72	17.57	34.41	24.72	36.97	21.12	15.03	18.74
Merged-chr2-155284851-2	chr2	155284363	155285363	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004721, intron 11 of 11)	intron (NM_001004721, intron 11 of 11)	8499.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	30.32	23.5	32.37	6.75	3.73	9.65	29.57	34.05	17.49
Merged-chr16-90221885-2	chr16	90221356	90222356	+	744.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1114.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	157.89	179.25	77.7	131.57	142.29	92.44	117.24	127.34	91.81
Merged-chr4-149049731-2	chr4	149049228	149050228	+	744.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50084.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	18.31	10.6	0.92	21.59	7.46	11.25	4.22	0.88	1.25
Merged-chr8-56277358-3	chr8	56276850	56277850	+	744.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17202.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	8.01	1.84	4.62	1.35	6.06	8.04	5.28	3.98	5.0
Merged-chr3-127560724-3	chr3	127560253	127561253	+	744.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197997, intron 4 of 25)	intron (NM_197997, intron 4 of 25)	7264.0	NM_197997	71643.0	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	10.87	8.29	3.7	6.75	15.86	9.65	17.96	18.57	13.74
Merged-chrX-106140327-1	chrX	106139827	106140827	+	744.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	58.35	62.21	29.6	64.1	34.06	36.17	41.19	49.08	26.85
Merged-chr10-43702582-3	chr10	43702069	43703069	+	744.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43589.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	8.01	11.52	3.7	9.45	7.93	5.63	20.07	14.15	5.0
Merged-chr8-104099155-2	chr8	104098643	104099643	+	744.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131138, intron 1 of 2)	B3|SINE|B2	-2482.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	10.87	6.45	0.0	3.37	7.93	8.04	6.34	7.07	6.25
Merged-chr5-25223567-3	chr5	25223077	25224077	+	744.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144908, intron 1 of 11)	intron (NM_144908, intron 1 of 11)	705.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	124.14	181.55	93.42	160.58	231.39	127.0	181.66	179.08	90.56
Merged-chr1-152838202-3	chr1	152837709	152838709	+	744.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001359257, exon 24 of 24)	3' UTR (NM_001359257, exon 24 of 24)	38056.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	25.74	14.75	38.85	9.45	14.46	32.96	21.12	24.76	21.86
Merged-chr7-25766297-2	chr7	25765813	25766813	+	744.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	LTR33A|LTR|ERVL	-11554.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	25.74	19.35	24.97	22.94	20.06	47.42	19.01	20.78	26.23
Merged-chr10-75798524-2	chr10	75798011	75799011	+	744.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	73.0	NM_008185	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	3.43	1.84	0.0	3.37	1.4	2.41	5.28	1.33	1.25
Merged-chr9-47616614-2	chr9	47616107	47617107	+	744.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	86255.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	13.16	21.66	25.9	31.04	25.66	20.09	22.18	12.38	14.36
Merged-chr12-8320220-3	chr12	8319718	8320718	+	744.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 2 of 6)	intron (NM_021429, intron 2 of 6)	6785.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	5.15	1.38	3.7	0.0	2.33	6.43	4.22	1.33	2.5
Merged-chr8-83081881-3	chr8	83081378	83082378	+	744.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	MTE2a|LTR|ERVL-MaLR	-83474.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	31.46	49.76	35.15	44.53	60.18	76.36	50.7	36.7	53.71
Merged-chr5-130204769-2	chr5	130204268	130205268	+	744.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199059, intron 4 of 8)	intron (NM_001199059, intron 4 of 8)	-14976.0	NM_001081394	71667.0	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	11.44	10.14	13.87	17.54	15.39	7.23	14.79	20.34	11.87
Merged-chr15-25445961-2	chr15	25445455	25446455	+	744.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	31763.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	8.01	1.38	9.25	7.42	3.27	1.61	3.17	3.98	2.5
Merged-chr1-64615861-6	chr1	64615426	64616426	+	744.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 1 of 2)	intron (NM_025964, intron 1 of 2)	1242.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	158.46	223.48	111.92	144.39	139.49	75.56	172.16	244.52	121.16
Merged-chr5-118269178-3	chr5	118268663	118269663	+	744.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23936.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	2.29	0.92	1.85	0.0	1.4	1.61	0.0	0.88	1.25
Merged-chr12-79807885-3	chr12	79807366	79808366	+	744.061096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 10 of 10)	intron (NM_009014, intron 10 of 10)	116867.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	31.46	22.12	23.12	24.29	21.93	20.9	40.14	36.26	21.86
Merged-chr3-97824906-3	chr3	97824404	97825404	+	744.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	-56890.0	NR_110360	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	34.9	24.88	12.02	25.64	14.0	24.11	30.63	18.13	5.62
Merged-chr5-63906699-3	chr5	63906207	63907207	+	744.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62190.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	6.29	2.3	0.0	3.37	0.93	4.82	1.06	3.1	0.0
Merged-chr11-36947103-1	chr11	36946603	36947603	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger15a|DNA|TcMar-Tigger	-2862.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.43	6.45	9.25	14.84	7.0	20.09	24.29	9.29	7.49
Merged-chr13-24697101-1	chr13	24696601	24697601	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 13 of 14)	UCON28c|Unknown|Unknown	58453.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	10.87	11.52	11.1	7.42	11.66	12.86	4.22	7.07	5.0
Merged-chr11-95840246-2	chr11	95839736	95840736	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163464, intron 1 of 7)	intron (NM_001163464, intron 1 of 7)	-2059.0	NM_023121	14710.0	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	50.34	41.47	56.42	70.85	46.18	65.11	162.65	129.55	51.21
Merged-chr7-26263927-1	chr7	26263427	26264427	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2904.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	3.43	4.61	12.95	6.07	7.93	6.43	7.39	1.77	3.75
Merged-chr14-47352482-1	chr14	47351982	47352982	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21378.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	77.8	51.61	64.75	93.79	64.38	98.87	61.26	39.8	18.74
Merged-chr5-71593956-1	chr5	71593456	71594456	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359050, intron 2 of 2)	intron (NM_001359050, intron 2 of 2)	-45751.0	NM_030052	78174.0	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	14.87	10.14	9.25	15.52	7.0	12.86	12.67	12.38	14.99
Merged-chr8-4531896-2	chr8	4531396	4532396	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38491.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	9.72	0.0	9.25	7.42	0.0	1.61	7.39	0.0	1.25
Merged-chr6-99666157-3	chr6	99665683	99666683	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025829, intron 1 of 6)	L2a|LINE|L2	588.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	98.39	117.5	145.22	96.48	54.58	64.3	101.39	83.13	40.59
Merged-chr11-89106035-1	chr11	89105535	89106535	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR20B5_MM|LTR|ERVK	32194.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	7.44	4.61	3.7	4.05	0.93	0.0	2.11	1.33	5.62
Merged-chr13-9130022-2	chr13	9129524	9130524	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 3 of 17)	intron (NM_172585, intron 3 of 17)	36143.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	51.48	38.25	49.95	41.16	43.85	44.21	33.8	34.49	29.98
Merged-chr14-32931386-1	chr14	32930886	32931886	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178791, intron 7 of 7)	intron (NM_178791, intron 7 of 7)	-59996.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	18.31	14.75	18.5	20.24	13.06	9.65	11.62	10.17	8.74
Merged-chr11-98849294-1	chr11	98848794	98849794	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080925, exon 9 of 15)	exon (NM_001080925, exon 9 of 15)	12509.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	8.58	3.69	3.7	3.37	11.2	12.86	8.45	5.31	8.74
Merged-chr14-45325616-1	chr14	45325116	45326116	+	744.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-4208.0	NM_025959	67089.0	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	1.72	1.84	0.0	7.42	1.87	4.82	3.17	0.44	3.75
Merged-chr12-16920322-1	chr12	16919822	16920822	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	URR1A|DNA|hAT-Charlie	25344.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	20.59	17.51	9.25	28.34	10.73	20.09	15.84	12.38	13.74
Merged-chr7-62463257-1	chr7	62462757	62463757	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013788, exon 1 of 1)	3' UTR (NM_013788, exon 1 of 1)	1253.0	NM_013788	27412.0	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.0	0.46	1.85	5.4	2.33	0.8	0.0	0.44	3.75
Merged-chr5-8736591-1	chr5	8736091	8737091	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011076, intron 25 of 29)	intron (NM_011076, intron 25 of 29)	-61556.0	NM_011075	18669.0	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	1.72	0.92	3.7	3.37	1.4	4.82	2.11	3.1	1.87
Merged-chr1-184622055-2	chr1	184621563	184622563	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64372.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	51.48	42.39	18.5	68.15	54.58	73.14	60.2	40.68	23.11
Merged-chr2-167662517-1	chr2	167662017	167663017	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-973.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	61.78	35.02	50.87	89.06	83.04	66.71	72.88	66.77	23.11
Merged-chr17-84117921-1	chr17	84117421	84118421	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39261.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	123.56	85.25	73.07	144.39	93.77	110.92	68.65	57.92	40.59
Merged-chr18-53153357-2	chr18	53152853	53153853	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-22939.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	25.74	15.67	17.57	4.05	1.4	1.61	29.57	14.59	11.24
Merged-chr4-128756295-2	chr4	128755786	128756786	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2972.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	8.01	3.23	7.4	14.84	2.8	6.43	11.62	7.07	7.49
Merged-chr6-65043294-1	chr6	65042794	65043794	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253392)	promoter-TSS (NM_001253392)	88.0	NM_001253392	13990.0	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|etl-1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	190.49	178.32	84.17	147.09	153.48	112.53	152.09	100.37	89.31
Merged-chr14-57730525-2	chr14	57730027	57731027	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153382, intron 1 of 1)	intron (NM_153382, intron 1 of 1)	3891.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	36.04	29.03	41.62	30.36	28.92	50.64	27.46	22.55	45.59
Merged-chr17-85464160-1	chr17	85463660	85464660	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	154236.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	4.58	1.38	1.85	1.35	0.47	2.41	2.11	3.1	1.87
Merged-chr3-96402043-3	chr3	96401522	96402522	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	12811.0	NR_001579	21748.0		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	6.86	2.76	1.85	2.7	4.2	5.63	2.11	0.0	2.5
Merged-chr10-21037420-1	chr10	21036920	21037920	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358561, intron 17 of 22)	Lx8b|LINE|L1	-3400.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	2.86	7.83	9.25	12.14	4.67	4.02	5.28	7.07	5.0
Merged-chr9-49484318-1	chr9	49483818	49484818	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172770, intron 2 of 21)	intron (NM_172770, intron 2 of 21)	1907.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	21.17	11.52	14.8	32.39	31.72	36.17	3.17	2.65	5.0
Merged-chr18-80410515-2	chr18	80410001	80411001	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	-46247.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	15.45	10.6	18.5	13.49	7.46	4.02	7.39	3.54	5.62
Merged-chr1-60662717-3	chr1	60662175	60663175	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83713.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	19.45	13.82	15.72	59.38	45.72	76.36	21.12	15.48	14.36
Merged-chr10-77369316-1	chr10	77368816	77369816	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	48957.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	2.29	0.92	2.77	4.05	5.6	4.82	0.0	2.21	3.75
Merged-chr17-24206675-1	chr17	24206175	24207175	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010947, exon 6 of 6)	exon (NM_010947, exon 6 of 6)	-1113.0	NM_001163850	224617.0	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	6.86	4.15	1.85	8.1	4.2	5.63	5.28	3.54	2.5
Merged-chr11-61660998-3	chr11	61660467	61661467	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027817, intron 2 of 4)	intron (NM_027817, intron 2 of 4)	7646.0	NM_027817	71520.0	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	4.0	3.23	7.4	12.14	3.73	2.41	1.06	3.98	6.25
Merged-chr19-59208683-1	chr19	59208183	59209183	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10965.0	NM_207261	332396.0	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0.0	0.92	0.0	3.37	2.8	4.82	7.39	0.88	2.5
Merged-chr9-57558817-1	chr9	57558317	57559317	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2127.0	NM_022813	24044.0	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	33.18	43.77	49.02	22.27	28.46	33.76	36.97	43.33	33.72
Merged-chr14-103234378-1	chr14	103233878	103234878	+	744.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207215, intron 26 of 84)	L2a|LINE|L2	112422.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.15	11.52	6.47	5.4	9.33	9.65	6.34	9.73	8.74
Merged-chr2-163420546-2	chr2	163419997	163420997	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151490)	TTS (NR_151490)	726.0	NR_151490	108168734.0	Mm.440000	NR_151490		2900093K20Rik	-	RIKEN cDNA 2900093K20 gene	ncRNA	45.76	67.27	60.12	74.22	84.44	57.87	73.93	68.54	38.72
Merged-chr6-129626042-3	chr6	129625557	129626557	+	744.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2193.0	NM_001286018	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	21.74	27.65	33.3	22.94	21.46	22.51	40.14	21.67	26.23
Merged-chr4-134478153-3	chr4	134477615	134478615	+	743.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102c|DNA|hAT-Charlie	9795.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.58	2.76	2.77	7.42	2.33	0.0	3.17	0.88	0.0
Merged-chr11-86739099-2	chr11	86738610	86739610	+	743.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	18457.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	26.31	64.51	48.1	39.81	38.25	41.8	29.57	37.58	34.35
Merged-chr2-148444968-2	chr2	148444470	148445470	+	743.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	15.45	7.37	6.47	6.75	6.53	1.61	3.17	2.21	2.5
Merged-chr14-40947887-3	chr14	40947372	40948372	+	743.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	337.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	46.91	27.65	44.4	31.04	38.25	39.39	45.42	28.3	16.86
Merged-chr14-70815865-3	chr14	70815353	70816353	+	743.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37080.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	15.45	14.75	15.72	14.84	11.2	16.88	11.62	9.29	8.74
Merged-chr12-55870147-2	chr12	55869651	55870651	+	743.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037756)	TTS (NM_001037756)	33785.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.72	2.3	3.7	2.7	5.13	7.23	3.17	1.77	9.37
Merged-chr16-45005521-2	chr16	45005023	45006023	+	743.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61845.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	1.72	5.53	6.47	6.07	5.6	4.02	6.34	6.63	5.62
Merged-chr5-104938686-2	chr5	104938173	104939173	+	743.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 14 of 15)	intron (NM_030239, intron 14 of 15)	44044.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	30.32	37.78	38.85	20.92	18.66	40.99	3.17	1.77	11.24
Merged-chr10-118796100-2	chr10	118795580	118796580	+	743.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72823.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	286.03	273.25	167.42	305.65	251.45	213.81	287.28	362.58	148.64
Merged-chr6-43408998-3	chr6	43408488	43409488	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-33441.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	12.01	26.26	9.25	19.57	16.79	29.74	19.01	9.29	28.1
Merged-chr19-41656235-2	chr19	41655735	41656735	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015748, intron 4 of 36)	intron (NM_015748, intron 4 of 36)	67584.0	NR_106166	102465884.0		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	2.29	1.84	1.85	2.02	1.4	4.82	4.22	2.65	11.24
Merged-chr6-83444155-2	chr6	83443667	83444667	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028382, intron 2 of 2)	intron (NR_028382, intron 2 of 2)	2412.0	NR_028382	320775.0	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	25.17	17.51	11.1	27.66	10.73	23.31	16.9	13.71	18.74
Merged-chr14-65389894-3	chr14	65389386	65390386	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199029, intron 4 of 9)	intron (NM_199029, intron 4 of 9)	31210.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.0	8.29	3.7	7.42	4.67	3.22	17.96	7.07	5.0
Merged-chr4-141536957-3	chr4	141536446	141537446	+	743.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	1651.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	32.61	42.85	24.05	66.8	26.59	69.93	54.92	40.68	38.72
Merged-chr11-94149234-1	chr11	94148734	94149734	+	743.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-62220.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.0	2.76	1.85	9.45	3.73	0.8	5.28	5.31	1.25
Merged-chr2-131179363-5	chr2	131178813	131179813	+	743.8076169999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	754.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	56.63	86.17	109.14	68.15	76.51	97.26	64.43	71.19	74.94
Merged-chr18-66477553-3	chr18	66477081	66478081	+	743.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18977.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	212.8	217.49	171.12	219.28	196.4	237.12	291.51	337.82	170.5
Merged-chr16-17249284-3	chr16	17248797	17249797	+	743.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178922, intron 1 of 2)	intron (NM_178922, intron 1 of 2)	15710.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	12.01	6.91	3.7	4.05	10.26	4.82	1.06	7.52	3.75
Merged-chr12-32123717-3	chr12	32123221	32124221	+	743.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62442.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	10.87	9.22	3.7	8.77	8.4	8.04	9.51	8.84	10.62
Merged-chr14-75751236-2	chr14	75750726	75751726	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177381, intron 1 of 22)	intron (NM_177381, intron 1 of 22)	3267.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	8.01	7.37	7.4	8.77	8.4	11.25	6.34	6.63	11.87
Merged-chr13-90930060-2	chr13	90929579	90930579	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6957.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	5.72	5.53	7.4	12.82	5.6	3.22	4.22	3.1	4.37
Merged-chr19-5601913-3	chr19	5601434	5602434	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026616)	promoter-TSS (NM_026616)	61.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	50.34	41.01	43.47	35.76	33.12	32.96	55.98	33.6	58.71
Merged-chr8-127781211-2	chr8	127780718	127781718	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	481566.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	6.86	4.61	7.4	1.35	0.47	17.68	6.34	4.42	11.87
Merged-chr4-46917012-1	chr4	46916512	46917512	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081141, intron 1 of 18)	intron (NM_001081141, intron 1 of 18)	74702.0	NM_001081141	242425.0	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	4.0	2.3	6.47	4.05	2.33	4.82	1.06	1.33	0.0
Merged-chr8-60968729-3	chr8	60968242	60969242	+	743.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007711, intron 1 of 11)	Lx8|LINE|L1	-13943.0	NM_173876	12725.0	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	25.17	28.57	21.27	29.69	41.99	47.42	38.02	32.28	26.85
Merged-chr3-103790202-1	chr3	103789702	103790702	+	743.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	1073.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	102.4	111.97	70.3	70.17	57.85	61.89	70.76	56.6	49.34
Merged-chr13-94159070-5	chr13	94158544	94159544	+	743.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	101248.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	12.01	16.59	17.57	18.22	22.86	33.76	22.18	8.84	5.0
Merged-chr13-37969558-3	chr13	37969077	37970077	+	743.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24631.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.43	3.69	0.0	8.77	2.33	1.61	2.11	3.98	2.5
Merged-chr2-160209592-1	chr2	160209092	160210092	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117902.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	43.48	28.11	14.8	51.28	34.99	47.42	39.08	33.16	33.1
Merged-chr12-78923949-1	chr12	78923449	78924449	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17011.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	1.72	3.23	1.85	2.02	3.27	3.22	6.34	5.31	1.25
Merged-chr1-193888198-1	chr1	193887698	193888698	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	334561.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	5.15	1.38	0.0	2.02	5.13	3.22	3.17	1.77	2.5
Merged-chr4-40997782-3	chr4	40997286	40998286	+	743.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290448, intron 10 of 15)	intron (NM_001290448, intron 10 of 15)	4091.0	NR_037277	100526501.0		NR_037277	ENSMUSG00000092862	Mir3094	mir-3094|mmu-mir-3094	microRNA 3094	ncRNA	24.03	17.97	11.1	17.54	10.26	15.27	33.8	49.96	13.74
Merged-chr3-75280616-1	chr3	75280116	75281116	+	743.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10538.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	11.44	19.81	19.42	14.84	13.06	10.45	12.67	13.27	12.49
Merged-chr3-83899758-2	chr3	83899242	83900242	+	743.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172681, intron 33 of 34)	intron (NM_172681, intron 33 of 34)	-58134.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	4.0	3.69	1.85	2.7	3.27	6.43	4.22	0.88	1.25
Merged-chr5-121917770-2	chr5	121917239	121918239	+	743.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	68742.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	45.19	29.03	31.45	27.66	31.26	4.82	17.96	6.63	2.5
Merged-chr19-14587441-2	chr19	14586942	14587942	+	743.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302951, intron 4 of 19)	intron (NM_001302951, intron 4 of 19)	9771.0	NM_001302951	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	38.9	60.82	57.35	47.9	30.32	41.8	57.03	60.13	46.22
Merged-chr8-25196579-3	chr8	25196094	25197094	+	743.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	4948.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	42.33	43.77	43.47	47.23	48.98	54.66	47.53	47.75	33.1
Merged-chr5-96866559-2	chr5	96866078	96867078	+	743.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-54694.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	24.6	18.89	20.35	38.46	19.59	32.15	32.74	28.3	10.62
Merged-chr2-129675095-3	chr2	129674604	129675604	+	743.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23554.0	NM_001286502	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	3.43	1.38	3.7	2.02	0.0	1.61	8.45	1.77	4.37
Merged-chr13-105316206-2	chr13	105315707	105316707	+	743.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21722.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	12.01	5.53	0.0	4.72	8.4	6.43	3.17	3.1	5.62
Merged-chr8-41041874-1	chr8	41041374	41042374	+	743.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005865)	promoter-TSS (NM_001005865)	57.0	NM_001005865	102103.0	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	20.59	21.2	12.95	20.24	20.99	20.9	35.91	49.96	18.11
Merged-chr7-53551625-2	chr7	53551117	53552117	+	743.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	340272.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.0	2.3	6.47	3.37	2.8	2.41	2.11	3.1	9.99
Merged-chr5-104005211-3	chr5	104004730	104005730	+	743.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053262, intron 4 of 6)	intron (NM_053262, intron 4 of 6)	16566.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	10.3	13.36	17.57	13.49	9.33	12.06	20.07	15.92	9.99
Merged-chr3-95517654-3	chr3	95517153	95518153	+	743.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-9133.0	NM_021281	13040.0	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	28.6	15.67	24.05	21.59	8.86	20.9	26.4	13.71	20.61
Merged-chr2-168117349-3	chr2	168116873	168117873	+	743.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	36369.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	4.0	3.23	0.0	2.7	2.33	4.82	3.17	0.88	4.37
Merged-chr9-25175385-3	chr9	25174874	25175874	+	743.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23593.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	6.29	8.75	19.42	12.82	10.73	10.45	6.34	5.75	5.0
Merged-chr2-92563089-1	chr2	92562589	92563589	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29117.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	8.58	0.92	0.92	4.05	2.8	3.22	4.22	1.33	1.25
Merged-chr11-115579185-2	chr11	115578674	115579674	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002929, intron 11 of 18)	intron (NM_001002929, intron 11 of 18)	14730.0	NM_001002929	445007.0	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	22.31	29.49	25.9	8.1	5.6	30.54	29.57	20.34	20.61
Merged-chr1-38049809-1	chr1	38049309	38050309	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198303, intron 21 of 23)	intron (NM_198303, intron 21 of 23)	51799.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	4.0	2.3	1.85	3.37	4.67	6.43	6.34	3.1	4.37
Merged-chr15-73629584-2	chr15	73629044	73630044	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4800.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	20.02	20.27	34.22	22.94	14.0	21.7	17.96	9.73	17.49
Merged-chr19-29496975-2	chr19	29496519	29497519	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	24968.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	48.05	41.93	56.42	64.77	51.32	69.13	100.34	68.54	34.97
Merged-chr6-56608446-2	chr6	56607948	56608948	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96251.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.58	3.23	0.0	0.0	1.87	1.61	0.0	0.44	1.25
Merged-chrX-170677447-1	chrX	170676947	170677947	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 7 of 7)	CpG-16011	4803.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	6.86	3.23	7.4	8.77	0.0	4.82	6.34	3.1	3.75
Merged-chr17-46783099-3	chr17	46782570	46783570	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025433)	promoter-TSS (NM_025433)	-414.0	NM_025433	66229.0	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	46.34	37.32	71.22	41.16	37.32	54.66	45.42	44.66	36.85
Merged-chr5-65096238-2	chr5	65095740	65096740	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-11328.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	4.0	7.83	7.4	6.75	6.53	12.06	22.18	23.88	14.99
Merged-chr11-20743569-2	chr11	20743064	20744064	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2008.0	NM_181411	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	21.17	22.12	20.35	29.01	28.92	28.13	30.63	20.34	23.73
Merged-chr9-44087902-3	chr9	44087402	44088402	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	2982.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	28.6	25.8	17.57	44.53	41.05	43.4	32.74	22.55	16.24
Merged-chr8-83858116-2	chr8	83857634	83858634	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-41964.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	9.72	18.89	13.87	3.37	0.47	0.8	10.56	6.19	5.0
Merged-chr15-63924640-2	chr15	63924127	63925127	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 10 of 10)	intron (NR_029414, intron 10 of 10)	10166.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	3.43	4.61	9.25	6.07	2.33	4.82	1.06	2.21	5.62
Merged-chr13-51100059-1	chr13	51099559	51100559	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001283030)	promoter-TSS (NM_001283030)	668.0	NR_029463	77428.0	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	41.19	42.39	38.85	38.46	46.18	73.14	53.87	43.77	48.09
Merged-chr7-122470620-1	chr7	122470120	122471120	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	MER5A1|DNA|hAT-Charlie	181495.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.86	6.45	11.1	8.1	6.53	10.45	8.45	3.1	7.49
Merged-chr4-53151148-2	chr4	53150648	53151648	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	intron (NM_013454, intron 1 of 49)	8747.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	108.12	127.18	74.0	143.71	125.49	132.63	154.2	172.89	81.81
Merged-chr3-8957851-3	chr3	8957337	8958337	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	6309.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	10.3	12.44	11.1	10.8	8.86	7.23	11.62	8.84	7.49
Merged-chr2-145370487-1	chr2	145369987	145370987	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	ORR1C2|LTR|ERVL-MaLR	127876.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	16.59	16.13	14.8	16.87	20.06	11.25	22.18	18.57	14.36
Merged-chrX-101427946-2	chrX	101427464	101428464	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1687.0	NM_023144	53610.0	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	43.48	42.39	29.6	24.29	28.46	19.29	17.96	34.49	26.23
Merged-chr10-69352355-2	chr10	69351852	69352852	+	743.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007659, intron 1 of 7)	intron (NM_007659, intron 1 of 7)	560.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	17.73	19.35	11.1	18.22	14.0	12.86	27.46	19.9	14.99
Merged-chr16-49971969-2	chr16	49971476	49972476	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8484.0	NR_045001	628951.0	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	97.25	81.56	54.57	98.51	59.71	73.95	74.99	79.15	46.84
Merged-chr10-93356295-1	chr10	93355795	93356795	+	743.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20084.0	NR_038014	432488.0	Mm.32833	NR_038014		Gm17745	Gm3546	predicted gene, 17745	ncRNA	12.59	9.68	14.8	18.22	7.93	15.27	3.17	5.31	1.87
Merged-chr12-101075204-3	chr12	101074685	101075685	+	743.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160214, intron 1 of 14)	intron (NM_001160214, intron 1 of 14)	-7266.0	NR_038048	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	53.2	63.59	64.75	28.34	40.59	47.42	101.39	88.43	51.84
Merged-chr1-136629553-2	chr1	136629070	136630070	+	743.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177643, exon 2 of 2)	3' UTR (NM_177643, exon 2 of 2)	4669.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	14.3	27.19	12.95	22.94	25.66	22.51	51.75	41.56	18.74
Merged-chr3-144453827-3	chr3	144453330	144454330	+	743.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355234, intron 3 of 6)	intron (NM_001355234, intron 3 of 6)	116386.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	2.86	3.23	2.77	2.7	3.27	3.22	1.06	1.33	2.5
Merged-chr5-100616895-3	chr5	100616403	100617403	+	743.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44698.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	32.04	28.11	15.72	16.19	16.79	29.74	41.19	38.47	24.98
Merged-chr11-107131305-5	chr11	107130877	107131877	+	743.4400019999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176850, exon 1 of 28)	exon (NM_176850, exon 1 of 28)	545.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	122.42	124.87	116.54	116.05	124.56	123.78	170.05	121.6	90.56
Merged-chr10-7924412-3	chr10	7923909	7924909	+	743.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359534, intron 2 of 6)	intron (NM_001359534, intron 2 of 6)	28656.0	NM_001359534	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	14.3	17.97	14.8	16.87	11.66	11.25	17.96	16.36	26.23
Merged-chr12-112670871-3	chr12	112670367	112671367	+	743.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	3409.0	NM_001165894	11651.0	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	13.16	14.28	27.75	20.24	16.79	35.37	20.07	10.17	22.48
Merged-chr5-5301184-2	chr5	5300687	5301687	+	743.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-35119.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.0	3.69	3.7	1.35	3.27	0.0	10.56	4.86	5.62
Merged-chr11-109413263-2	chr11	109412756	109413756	+	743.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-12690.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	18.31	7.83	10.17	44.53	22.39	8.84	20.07	7.96	6.25
Merged-chr7-111226466-2	chr7	111225969	111226969	+	743.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-103794.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	10.3	13.82	13.87	14.84	15.39	22.51	7.39	12.82	12.49
Merged-chr16-33191033-2	chr16	33190464	33191464	+	743.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	5893.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	76.66	89.39	79.55	77.59	58.78	65.11	74.99	84.9	49.96
Merged-chr14-65902999-2	chr14	65902498	65903498	+	743.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50746.0	NM_172604	219151.0	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	4.58	5.07	0.92	3.37	2.8	1.61	9.51	3.98	8.12
Merged-chr7-30508252-3	chr7	30507737	30508737	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019546, intron 7 of 9)	intron (NM_019546, intron 7 of 9)	-6885.0	NR_036630	100504207.0	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	6.29	4.15	5.55	4.72	3.73	1.61	13.73	18.13	13.12
Merged-chr15-64181427-3	chr15	64180922	64181922	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-120974.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	18.88	7.83	14.8	19.57	8.86	8.04	11.62	6.63	18.74
Merged-chr9-13681812-1	chr9	13681312	13682312	+	743.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	19352.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	14.3	7.83	0.0	1.35	7.0	6.43	2.11	6.63	9.37
Merged-chr9-44086049-1	chr9	44085549	44086549	+	743.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198091, intron 1 of 11)	intron (NM_198091, intron 1 of 11)	1129.0	NM_198091	53376.0	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	54.92	36.4	42.55	47.23	39.19	38.58	23.24	10.17	19.98
Merged-chr14-47504725-1	chr14	47504225	47505225	+	743.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146085, intron 2 of 3)	intron (NM_001146085, intron 2 of 3)	32164.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	7.44	10.6	13.87	10.12	0.93	11.25	23.24	15.48	9.37
Merged-chr6-57513869-3	chr6	57513370	57514370	+	743.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175523, intron 6 of 6)	intron (NM_175523, intron 6 of 6)	21556.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	21.17	28.11	9.25	14.17	12.6	20.09	17.96	17.24	21.23
Merged-chr2-50631965-3	chr2	50631442	50632442	+	743.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3c|LINE|L1	276917.0	NR_154590	102634280.0		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	11.44	14.75	3.7	4.72	1.4	4.82	3.17	1.77	4.37
Merged-chr8-83653556-3	chr8	83653077	83654077	+	743.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	intron (NM_018771, intron 1 of 6)	899.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	28.6	18.43	14.8	28.34	16.79	28.94	40.14	38.91	16.86
Merged-chr16-91524252-2	chr16	91523758	91524758	+	743.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	3286.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	26.31	25.8	36.07	22.94	22.39	33.76	46.47	40.24	36.85
Merged-chr2-51387356-2	chr2	51386862	51387862	+	743.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50538.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	5.15	4.15	3.7	2.7	3.73	0.0	0.0	5.31	1.25
Merged-chr11-86894389-3	chr11	86893878	86894878	+	743.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86718.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	7.44	3.69	1.85	6.75	7.93	4.02	2.11	3.1	2.5
Merged-chr18-4280040-3	chr18	4279529	4280529	+	743.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	72924.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.01	9.22	10.17	8.77	6.06	4.82	11.62	10.17	11.87
Merged-chr13-18779804-3	chr13	18779318	18780318	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 4 of 28)	MTC|LTR|ERVL-MaLR	62526.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	18.88	20.27	18.5	18.22	10.73	10.45	15.84	15.92	14.99
Merged-chr11-20469455-3	chr11	20468973	20469973	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73780.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	40.04	32.25	54.57	38.46	22.39	47.42	76.05	42.45	44.34
Merged-chr1-134801988-3	chr1	134801505	134802505	+	743.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	1716.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	66.93	89.39	100.82	26.31	22.86	31.35	32.74	25.65	11.87
Merged-chr9-58954640-2	chr9	58954140	58955140	+	743.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 7 of 28)	LTR41|LTR|ERVL	81801.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	13.73	19.81	5.55	12.14	17.26	18.49	20.07	8.84	14.99
Merged-chr5-102778053-1	chr5	102777553	102778553	+	743.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286468, intron 1 of 7)	intron (NM_001286468, intron 1 of 7)	9243.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	3.43	3.23	1.85	8.1	10.73	1.61	3.17	7.07	2.5
Merged-chr8-106887964-3	chr8	106887467	106888467	+	743.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145412, intron 1 of 3)	intron (NM_145412, intron 1 of 3)	5626.0	NM_145412	214987.0	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	2.86	6.91	0.0	2.02	3.73	4.82	7.39	6.63	3.12
Merged-chr15-100187046-2	chr15	100186530	100187530	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172819, intron 18 of 32)	intron (NM_172819, intron 18 of 32)	1006.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	8.58	10.6	8.32	18.22	8.4	10.45	9.51	10.17	2.5
Merged-chr5-45474387-2	chr5	45473906	45474906	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18968.0	NM_024434	66988.0	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	2.29	4.15	1.85	0.67	0.93	2.41	5.28	2.21	1.25
Merged-chr9-50834262-2	chr9	50833719	50834719	+	743.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045601, intron 13 of 13)	intron (NR_045601, intron 13 of 13)	-22705.0	NM_001034085	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	17.73	6.91	5.55	7.42	5.6	8.04	6.34	2.21	6.25
Merged-chr3-127914344-2	chr3	127913879	127914879	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1792.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	4.58	5.99	1.85	8.77	8.86	12.06	9.51	2.65	14.99
Merged-chr11-63952268-2	chr11	63951790	63952790	+	743.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11936.0	NR_131111	78883.0	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	6.86	3.23	2.77	2.7	0.93	4.82	3.17	1.33	3.12
Merged-chr2-180578902-2	chr2	180578406	180579406	+	743.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2316.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	4.58	3.69	11.1	0.67	1.4	5.63	1.06	3.1	5.0
Merged-chr7-73594626-2	chr7	73594109	73595109	+	743.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36214.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	53.2	99.99	83.25	74.22	78.37	75.56	85.55	141.49	69.95
Merged-chr16-33683907-3	chr16	33683434	33684434	+	743.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175256)	promoter-TSS (NM_175256)	-532.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	68.07	81.56	69.37	67.47	38.25	61.09	78.16	74.73	48.09
Merged-chr2-31460372-3	chr2	31459793	31460793	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9977.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	8.01	2.3	1.85	5.4	0.93	0.0	9.51	3.1	2.5
Merged-chr5-104946816-3	chr5	104946299	104947299	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	Lx8b|LINE|L1	35918.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	20.59	14.75	11.1	6.75	6.06	6.43	7.39	10.61	8.74
Merged-chr17-78455323-3	chr17	78454813	78455813	+	743.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37161.0	NM_001285940	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	6.29	4.15	1.85	5.4	3.73	0.0	3.17	2.21	4.37
Merged-chr1-55613103-2	chr1	55612601	55613601	+	743.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	207155.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	14.87	10.6	0.0	9.45	16.33	9.65	9.51	5.75	5.62
Merged-chr3-7535331-2	chr3	7534812	7535812	+	743.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173181, intron 7 of 8)	intron (NM_173181, intron 7 of 8)	31886.0	NM_173181	67306.0	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	4.0	5.07	0.0	3.37	4.67	2.41	2.11	7.52	3.75
Merged-chr8-128602206-3	chr8	128601734	128602734	+	743.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83420.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	13.16	19.35	26.82	11.47	14.0	24.11	23.24	11.5	14.36
Merged-chr17-70970360-2	chr17	70969874	70970874	+	743.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	20142.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	35.47	24.42	30.52	19.57	4.67	10.45	32.74	24.32	16.24
Merged-chr8-25083325-3	chr8	25082825	25083825	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	18486.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	9.72	9.22	10.17	6.75	10.26	20.09	11.62	9.29	4.37
Merged-chr7-80191673-3	chr7	80191183	80192183	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013659, intron 1 of 14)	intron (NM_013659, intron 1 of 14)	4842.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	44.62	45.16	58.27	45.88	44.32	49.03	49.64	49.52	51.21
Merged-chr19-29430701-3	chr19	29430150	29431150	+	743.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021396, intron 2 of 5)	intron (NM_021396, intron 2 of 5)	19731.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	58.92	76.49	49.95	68.82	55.98	84.4	96.11	76.49	53.08
Merged-chr13-93095761-1	chr13	93095261	93096261	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_023821, exon 2 of 13)	exon (NM_023821, exon 2 of 13)	928.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	4.58	2.3	2.77	6.75	9.8	4.82	1.06	1.33	0.0
Merged-chr5-102640021-1	chr5	102639521	102640521	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	-128789.0	NM_001286468	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	2.29	5.07	0.92	3.37	3.27	3.22	0.0	3.1	6.25
Merged-chr15-58986633-1	chr15	58986133	58987133	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	52823.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	18.88	11.98	0.0	45.21	25.66	6.43	12.67	4.42	6.87
Merged-chr2-150872843-1	chr2	150872343	150873343	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	-30273.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	9.72	16.13	15.72	30.36	24.72	36.97	14.79	34.49	9.99
Merged-chr10-99171543-1	chr10	99171043	99172043	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	63408.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	118.42	152.98	117.47	134.94	121.29	114.14	127.8	139.72	79.94
Merged-chr14-77526536-1	chr14	77526036	77527036	+	743.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	Lx6|LINE|L1	-19668.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	4.0	3.69	3.7	2.02	2.33	1.61	4.22	4.86	5.62
Merged-chrX-85773281-1	chrX	85772781	85773781	+	743.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212444, intron 1 of 19)	intron (NM_212444, intron 1 of 19)	3538.0	NM_001294140	14933.0	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	4.58	3.69	0.0	3.37	1.87	3.22	6.34	5.31	1.25
Merged-chr11-20176249-1	chr11	20175749	20176749	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25163.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	8.58	6.45	3.7	10.12	5.6	8.04	6.34	3.54	12.49
Merged-chr4-70601516-1	chr4	70601016	70602016	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66588.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.0	3.23	3.7	1.35	3.27	6.43	5.28	4.42	0.0
Merged-chr18-64972361-2	chr18	64971854	64972854	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	L1MA5|LINE|L1	-51173.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.14	2.76	7.4	4.72	3.73	4.82	3.17	3.1	9.99
Merged-chr13-41804091-1	chr13	41803591	41804591	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	43397.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	5.15	5.07	1.85	10.12	3.73	4.02	7.39	4.42	3.75
Merged-chr4-95160262-1	chr4	95159762	95160762	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108040.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	13.73	11.06	6.47	10.8	3.27	15.27	5.28	12.38	9.99
Merged-chr11-108040999-2	chr11	108040510	108041510	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	44162.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.43	4.61	1.85	2.7	3.27	1.61	4.22	2.65	1.25
Merged-chr9-104724548-1	chr9	104724048	104725048	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	155065.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	4.0	1.38	0.0	4.72	5.13	11.25	3.17	0.0	0.0
Merged-chr5-142441785-1	chr5	142441285	142442285	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199068, intron 2 of 8)	Tigger7|DNA|TcMar-Tigger	-22146.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	15.45	10.6	11.1	19.57	16.33	31.35	7.39	13.71	6.25
Merged-chr12-35532946-1	chr12	35532446	35533446	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	2043.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	40.04	35.48	24.05	27.66	26.59	29.74	24.29	22.99	17.49
Merged-chr11-3931684-1	chr11	3931184	3932184	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130458, intron 1 of 9)	intron (NM_001130458, intron 1 of 9)	277.0	NM_001130459	21452.0	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	42.33	49.3	54.57	62.07	39.19	74.75	63.37	65.88	59.95
Merged-chr4-97564881-1	chr4	97564381	97565381	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17062.0	NM_001122952	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	1.72	2.3	1.85	2.7	4.67	1.61	5.28	0.44	3.75
Merged-chr15-36578092-1	chr15	36577592	36578592	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-22519.0	NM_025712	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	6.86	5.53	5.55	6.07	6.53	11.25	11.62	18.13	6.87
Merged-chr3-84868234-3	chr3	84867731	84868731	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177773, intron 3 of 13)	intron (NM_001177773, intron 3 of 13)	4086.0	NM_001177774	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	9.72	11.06	12.02	12.14	12.6	12.86	9.51	12.38	13.74
Merged-chr11-118211069-2	chr11	118210626	118211626	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1616.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	204.22	159.43	96.2	259.77	211.33	153.52	105.62	133.53	75.57
Merged-chrX-162827552-1	chrX	162827052	162828052	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	intron (NM_001290777, intron 1 of 5)	1902.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	10.87	8.75	5.55	5.4	7.93	12.86	9.51	8.4	6.87
Merged-chr11-79891322-1	chr11	79890822	79891822	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71065.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	12.01	7.83	14.8	41.16	27.52	38.58	20.07	15.48	19.98
Merged-chr7-130770951-1	chr7	130770451	130771451	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3118.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	4.58	0.46	7.4	6.75	1.4	5.63	5.28	1.33	0.0
Merged-chr18-4944640-2	chr18	4944141	4945141	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101948.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	11.44	8.75	5.55	8.77	8.86	8.04	15.84	7.52	6.25
Merged-chr6-116016526-1	chr6	116016026	116017026	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-21521.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	24.6	17.05	11.1	18.22	11.66	15.27	15.84	5.31	12.49
Merged-chr9-120817096-2	chr9	120816608	120817608	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98142.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	32.61	11.98	11.1	31.04	22.86	9.65	1.06	3.1	4.37
Merged-chr13-37749754-1	chr13	37749254	37750254	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76284.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	6.86	6.91	8.32	8.1	1.4	8.04	7.39	7.96	8.74
Merged-chr10-21192634-1	chr10	21192134	21193134	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	5690.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	1.72	3.23	0.0	4.72	5.13	3.22	3.17	0.88	3.75
Merged-chr4-153873674-1	chr4	153873174	153874174	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76802.0	NR_040670	407793.0	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	8.01	3.23	5.55	6.75	2.33	13.66	2.11	0.88	4.37
Merged-chr4-11387368-1	chr4	11386868	11387868	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290383)	promoter-TSS (NM_001290383)	-585.0	NM_194055	207920.0	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	2.86	0.0	4.62	2.02	0.47	1.61	1.06	0.0	0.0
Merged-chr14-70572571-2	chr14	70572054	70573054	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-5270.0	NM_153136	213484.0	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	3.43	2.76	3.7	5.4	5.6	14.47	2.11	2.65	0.0
Merged-chr10-79961412-1	chr10	79960912	79961912	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175450, intron 2 of 9)	intron (NM_175450, intron 2 of 9)	1260.0	NM_175450	216156.0	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	11.44	5.07	10.17	10.8	8.4	23.31	12.67	26.53	3.75
Merged-chr10-68446049-2	chr10	68445546	68446546	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	95829.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	26.89	21.66	3.7	31.04	39.65	29.74	22.18	42.45	19.98
Merged-chr10-59881081-1	chr10	59880581	59881581	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019965, intron 1 of 8)	intron (NM_019965, intron 1 of 8)	1490.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	38.9	27.65	16.65	26.99	9.33	36.97	24.29	21.67	16.86
Merged-chr7-86881134-1	chr7	86880634	86881634	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-34215.0	NM_001105189	637896.0	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	7.44	4.15	0.0	2.7	5.6	1.61	5.28	7.07	3.75
Merged-chr5-139060627-1	chr5	139060127	139061127	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 6 of 10)	intron (NM_001359099, intron 6 of 10)	-65674.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	3.43	2.3	3.7	3.37	4.2	4.02	2.11	3.98	5.0
Merged-chr4-126303580-1	chr4	126303080	126304080	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199473, intron 2 of 3)	B1_Mus1|SINE|Alu	16786.0	NM_199473	329941.0	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	5.72	4.61	6.47	2.7	3.27	1.61	4.22	1.33	1.25
Merged-chr13-83730809-1	chr13	83730309	83731309	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152244, intron 2 of 4)	CpG	-1684.0	NR_152246	320203.0	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik|ECONEXIN|EyeLinc1|Visc-1	RIKEN cDNA C130071C03 gene	ncRNA	1.14	1.38	5.55	4.72	2.33	1.61	3.17	0.88	1.25
Merged-chr7-114311330-1	chr7	114310830	114311830	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35214.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	7.44	4.15	1.85	8.1	9.33	9.65	6.34	2.21	0.0
Merged-chr18-3329073-1	chr18	3328573	3329573	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110851, intron 1 of 4)	B2_Mm1t|SINE|B2	-1482.0	NM_001110850	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	4.0	1.84	3.7	1.35	1.4	0.0	0.0	1.77	3.75
Merged-chrX-152233338-3	chrX	152232841	152233841	+	743.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013668, exon 1 of 26)	5' UTR (NM_013668, exon 1 of 26)	114.0	NM_013668	20591.0	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	128.14	178.78	78.62	101.88	106.83	90.02	116.18	135.75	73.07
Merged-chr18-5142001-1	chr18	5141501	5142501	+	743.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	23730.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	17.73	12.9	20.35	29.01	9.8	50.64	27.46	10.17	11.87
Merged-chr11-3330675-3	chr11	3330208	3331208	+	742.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178149)	promoter-TSS (NM_178149)	-23.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	8.58	1.38	3.7	12.82	4.2	1.61	3.17	6.63	8.12
Merged-chr17-73882364-2	chr17	73881855	73882855	+	742.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67841.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	7.44	3.69	3.7	5.4	3.27	2.41	2.11	1.33	4.37
Merged-chr16-4757671-3	chr16	4757164	4758164	+	742.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357050, intron 1 of 5)	intron (NM_001357050, intron 1 of 5)	718.0	NM_001357050	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	102.4	90.31	47.17	235.48	217.86	132.63	250.32	372.3	115.54
Merged-chr16-18617839-3	chr16	18617356	18618356	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4547.0	NM_001001999	14724.0	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	2.86	0.0	1.85	3.37	4.2	1.61	2.11	0.0	1.25
Merged-chr19-12575589-3	chr19	12575003	12576003	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026640, intron 1 of 3)	B1_Mm|SINE|Alu	1978.0	NM_026640	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	53.2	67.27	49.95	41.83	48.98	62.7	68.65	96.39	84.31
Merged-chr6-47911818-3	chr6	47911305	47912305	+	742.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR85c|LTR|Gypsy?	-8763.0	NM_145576	232784.0	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	9.15	8.29	6.47	8.77	2.8	14.47	13.73	8.4	6.25
Merged-chr19-53900194-3	chr19	53899685	53900685	+	742.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011050, intron 1 of 11)	intron (NM_011050, intron 1 of 11)	-3166.0	NM_001168492	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	13.16	18.89	15.72	18.22	19.59	14.47	21.12	12.82	9.99
Merged-chr17-87097986-2	chr17	87097427	87098427	+	742.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9752.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	22.31	21.66	29.6	15.52	14.0	25.72	7.39	0.44	5.62
Merged-chr6-134036974-2	chr6	134036480	134037480	+	742.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	1280.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	69.22	61.75	40.7	70.85	52.72	45.82	117.24	92.41	41.84
Merged-chr9-104281924-3	chr9	104281413	104282413	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18983.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	44.62	29.03	14.8	49.25	24.72	13.66	28.52	28.74	9.37
Merged-chr7-80584222-2	chr7	80583709	80584709	+	742.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49090.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	9.72	10.14	3.7	13.49	4.67	3.22	14.79	6.63	5.0
Merged-chr19-25036987-1	chr19	25036487	25037487	+	742.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	37458.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	4.0	7.83	14.8	9.45	5.13	10.45	31.69	34.05	18.74
Merged-chr3-32409132-1	chr3	32408632	32409632	+	742.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-27019.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	14.87	13.82	20.35	13.49	17.26	19.29	16.9	11.5	19.98
Merged-chr7-115001331-3	chr7	115000816	115001816	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50042.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.58	4.61	12.95	8.1	7.0	9.65	4.22	4.86	6.87
Merged-chr9-124013465-3	chr9	124012961	124013961	+	742.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8510.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	109.83	145.61	66.6	101.88	116.63	74.75	86.61	109.22	71.2
Merged-chr18-84646288-3	chr18	84645786	84646786	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177450, intron 1 of 11)	intron (NM_177450, intron 1 of 11)	3809.0	NM_177450	338403.0	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	2.86	2.3	3.7	2.02	5.13	1.61	5.28	1.33	0.0
Merged-chr4-88315211-3	chr4	88314774	88315774	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 21 of 43)	(TCCC)n|Simple_repeat|Simple_repeat	123652.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	7.44	11.06	1.85	14.84	9.33	4.02	6.34	4.42	13.12
Merged-chr5-33039619-3	chr5	33039097	33040097	+	742.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20781.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	1.72	9.68	3.7	6.07	2.33	0.0	9.51	3.54	2.5
Merged-chr1-165658794-2	chr1	165658298	165659298	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 3 of 5)	intron (NM_001038846, intron 3 of 5)	-24257.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	5.15	5.99	11.1	5.4	3.73	14.47	4.22	3.54	5.0
Merged-chr2-5393149-2	chr2	5392648	5393648	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	13758.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	63.5	70.5	66.6	72.19	46.18	30.54	110.9	105.68	60.58
Merged-chr3-88292176-2	chr3	88291679	88292679	+	742.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357024, intron 2 of 3)	B2_Mm2|SINE|B2	4659.0	NM_029801	76927.0	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	4.58	0.92	0.0	2.7	0.93	2.41	1.06	1.33	2.5
Merged-chr5-77172662-2	chr5	77172169	77173169	+	742.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38536.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	12.01	4.61	20.35	2.02	1.87	2.41	17.96	14.15	8.74
Merged-chr11-19972601-3	chr11	19972120	19973120	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	48178.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.0	5.53	7.4	6.75	3.73	16.08	10.56	1.33	2.5
Merged-chr13-20099708-3	chr13	20099190	20100190	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	9183.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	20.02	21.66	15.72	26.31	19.13	8.04	7.39	6.63	11.24
Merged-chr17-47194822-3	chr17	47194325	47195325	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-35405.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	9.72	12.9	8.32	14.17	11.2	13.66	15.84	8.4	10.62
Merged-chr13-21792173-3	chr13	21791709	21792709	+	742.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	4721.0	NM_001290466	319188.0	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	11.44	7.83	18.5	10.12	7.46	11.25	17.96	16.8	19.98
Merged-chr7-80186985-3	chr7	80186483	80187483	+	742.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013659, exon 1 of 15)	5' UTR (NM_013659, exon 1 of 15)	142.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	54.35	41.47	48.1	33.06	37.79	43.4	25.35	45.1	43.09
Merged-chr8-126779607-1	chr8	126779107	126780107	+	742.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69413.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	16.59	7.37	9.25	17.54	8.4	3.22	143.64	136.63	71.82
Merged-chr2-158207958-1	chr2	158207458	158208458	+	742.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001131021, intron 8 of 15)	intron (NM_001131021, intron 8 of 15)	15950.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	2.29	1.38	0.92	3.37	0.93	2.41	0.0	1.33	5.0
Merged-chr11-116017282-1	chr11	116016782	116017782	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4563.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	20.02	2.3	3.7	3.37	0.0	4.82	2.11	2.65	0.0
Merged-chr10-82083262-3	chr10	82082788	82083788	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35161.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	24.6	32.72	34.22	20.24	8.4	24.92	59.15	40.24	29.35
Merged-chr2-127337532-3	chr2	127336985	127337985	+	742.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010090, intron 3 of 3)	intron (NM_010090, intron 3 of 3)	-1154.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	10.87	11.98	11.1	12.82	4.2	8.04	12.67	5.75	8.12
Merged-chr16-22300161-2	chr16	22299675	22300675	+	742.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5187.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	3.43	3.23	0.0	10.12	4.67	3.22	4.22	3.1	3.75
Merged-chr4-115643257-2	chr4	115642836	115643836	+	742.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007823, intron 1 of 11)	intron (NM_007823, intron 1 of 11)	4369.0	NM_007823	13120.0	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	26.89	36.86	23.12	29.69	49.92	32.96	57.03	49.52	24.36
Merged-chr7-143284017-4	chr7	143283574	143284574	+	742.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001461, exon 1 of 1)	non-coding (NR_001461, exon 1 of 1)	12473.0	NR_001461	63830.0	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	9.15	12.9	7.4	11.47	8.86	11.25	24.29	14.15	17.49
Merged-chr4-19681735-2	chr4	19681195	19682195	+	742.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 2 of 24)	intron (NR_074090, intron 2 of 24)	27309.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	38.9	33.18	5.55	65.45	55.98	39.39	32.74	35.82	11.24
Merged-chr3-53436653-1	chr3	53436153	53437153	+	742.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	26605.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	1.72	0.92	1.85	6.75	6.06	6.43	0.0	0.44	1.25
Merged-chr7-101386053-3	chr7	101385619	101386619	+	742.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 5 of 33)	intron (NM_001040111, intron 5 of 33)	593.0	NM_027180	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	44.05	34.1	34.22	49.25	26.12	40.99	44.36	32.28	12.49
Merged-chr18-39265274-3	chr18	39264767	39265767	+	742.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	221978.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	20.59	17.05	20.35	22.94	12.13	19.29	11.62	10.61	13.74
Merged-chr14-75066088-3	chr14	75065587	75066587	+	742.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	50060.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	62.35	64.05	68.45	76.92	60.65	66.71	61.26	75.61	63.7
Merged-chr10-25381317-3	chr10	25380819	25381819	+	742.522217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358754, intron 1 of 16)	intron (NM_001358754, intron 1 of 16)	21521.0	NM_001358751	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	4.58	3.69	1.85	4.05	3.73	4.82	10.56	3.54	1.25
Merged-chr17-56273361-1	chr17	56272861	56273861	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	3406.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	15.45	16.13	12.95	14.17	17.73	16.08	26.4	17.24	7.49
Merged-chr6-82835804-1	chr6	82835304	82836304	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	46049.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	10.3	11.52	31.45	16.19	11.2	17.68	20.07	12.38	7.49
Merged-chr8-26239876-2	chr8	26239364	26240364	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81695.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	4.0	2.3	3.7	10.12	1.87	1.61	6.34	2.65	0.0
Merged-chr10-80173743-2	chr10	80173236	80174236	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152857)	TTS (NR_152857)	792.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	42.33	58.98	26.82	56.0	60.65	33.76	74.99	79.59	44.34
Merged-chr14-104849440-2	chr14	104848930	104849930	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	MLTR25C|LTR|ERVK	210283.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	3.43	3.23	5.55	1.35	4.2	0.0	2.11	1.77	5.0
Merged-chr13-3769598-1	chr13	3769098	3770098	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34720.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	10.87	5.07	7.4	4.72	7.93	9.65	5.28	2.65	3.75
Merged-chr4-95200678-2	chr4	95200179	95201179	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-148457.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	2.86	5.07	0.0	2.02	2.33	1.61	2.11	3.1	2.5
Merged-chr14-21984959-2	chr14	21984458	21985458	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4643.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.86	4.61	1.85	0.67	1.87	0.0	0.0	0.44	3.75
Merged-chr3-82876558-2	chr3	82876061	82877061	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277170)	promoter-TSS (NM_001277170)	-78.0	NM_001146328	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	0.57	2.3	1.85	4.05	2.8	0.0	3.17	0.44	2.5
Merged-chr15-82165467-2	chr15	82164981	82165981	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	B3|SINE|B2	18212.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	9.72	3.69	1.85	2.7	9.8	0.0	4.22	1.33	3.75
Merged-chr1-60015619-1	chr1	60015119	60016119	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357296, intron 4 of 10)	A-rich|Low_complexity|Low_complexity	27503.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	26.89	36.4	28.67	61.4	78.84	36.17	45.42	44.66	27.48
Merged-chr11-104469080-2	chr11	104468591	104469591	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359634)	promoter-TSS (NM_001359634)	-230.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	29.17	11.98	13.87	61.4	49.92	34.56	33.8	16.8	13.12
Merged-chr18-73863641-2	chr18	73863150	73864150	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360973)	promoter-TSS (NM_001360973)	55.0	NM_001360973	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	5.15	2.3	0.0	5.4	4.67	4.02	3.17	3.1	1.25
Merged-chr5-91283233-1	chr5	91282733	91283733	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040428)	promoter-TSS (NR_040428)	-157.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	1.72	0.46	3.7	4.05	2.33	4.02	2.11	2.21	3.12
Merged-chr10-56686098-1	chr10	56685598	56686598	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	254117.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	3.43	4.15	3.7	6.07	6.06	4.02	3.17	3.54	2.5
Merged-chr9-7605795-1	chr9	7605295	7606295	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22436.0	NM_013903	30800.0	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	6.29	2.76	3.7	5.4	6.06	2.41	2.11	4.42	2.5
Merged-chr11-117725115-2	chr11	117724614	117725614	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 5 of 21)	intron (NM_198022, intron 5 of 21)	54534.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	40.04	40.55	29.6	66.8	43.85	58.68	44.36	40.68	27.48
Merged-chr17-74394946-1	chr17	74394446	74395446	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144798)	promoter-TSS (NM_144798)	-662.0	NM_001252478	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	27.46	18.43	20.35	26.99	20.06	18.49	20.07	19.9	12.49
Merged-chr4-133449871-1	chr4	133449371	133450371	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30262.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	12.01	4.61	0.0	13.49	2.8	0.0	5.28	1.33	1.25
Merged-chr11-5735099-3	chr11	5734575	5735575	+	742.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	6101.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	44.62	26.73	24.05	24.29	16.33	24.92	95.06	88.88	29.98
Merged-chr19-16436175-1	chr19	16435675	16436675	+	742.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008137, exon 1 of 7)	5' UTR (NM_008137, exon 1 of 7)	508.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.0	2.76	3.7	11.47	2.8	3.22	9.51	2.21	3.75
Merged-chr2-102876351-2	chr2	102875853	102876853	+	742.466675	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	MIRc|SINE|MIR	25312.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.58	9.68	8.32	20.24	19.13	9.65	27.46	24.32	14.99
Merged-chr9-109021951-2	chr9	109021449	109022449	+	742.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16618.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	25.17	35.02	9.25	37.11	29.86	36.97	26.4	34.05	23.73
Merged-chr8-104219991-3	chr8	104219474	104220474	+	742.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001141922)	TTS (NM_001141922)	28584.0	NR_045642	57813.0	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	24.6	31.33	26.82	24.96	18.66	18.49	24.29	21.67	18.11
Merged-chr19-29364277-3	chr19	29363765	29364765	+	742.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2394.0	NM_026362	67759.0	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	14.3	11.52	7.4	8.1	6.06	9.65	11.62	11.94	9.99
Merged-chr2-27725160-3	chr2	27724667	27725667	+	742.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	14584.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	74.37	78.33	49.95	74.22	80.71	100.47	51.75	54.83	39.97
Merged-chr7-16426289-3	chr7	16425755	16426755	+	742.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198631, intron 10 of 13)	intron (NM_198631, intron 10 of 13)	25059.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	6.29	3.69	5.55	5.4	2.33	1.61	6.34	2.21	1.25
Merged-chr11-79522166-3	chr11	79521694	79522694	+	742.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077496, intron 1 of 1)	MT2B|LTR|ERVL	1568.0	NM_001077496	216984.0	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	102.97	112.43	69.37	62.75	63.91	51.44	117.24	128.23	64.33
Merged-chr12-55863220-1	chr12	55862720	55863720	+	742.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155205, intron 8 of 10)	intron (NR_155205, intron 8 of 10)	26854.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	4.58	7.37	0.0	17.54	17.26	11.25	32.74	25.2	11.24
Merged-chr7-45396400-3	chr7	45395891	45396891	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	-649.0	NR_126538	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	80.66	99.07	78.62	98.51	91.9	106.1	97.17	133.98	54.96
Merged-chr16-43109524-3	chr16	43109037	43110037	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285805, intron 2 of 10)	Lx3B|LINE|L1	-137747.0	NM_181058	56490.0	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	9.15	10.14	9.25	8.77	14.0	6.43	9.51	8.4	2.5
Merged-chr5-121545458-3	chr5	121544949	121545949	+	742.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010765, exon 1 of 14)	5' UTR (NM_010765, exon 1 of 14)	443.0	NM_010765	17165.0	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	243.69	142.38	168.34	211.86	137.62	159.15	201.73	122.04	101.8
Merged-chr3-121657091-1	chr3	121656591	121657591	+	742.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10638.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.43	2.76	5.55	2.7	2.8	6.43	5.28	0.88	2.5
Merged-chr2-13559512-3	chr2	13559002	13560002	+	742.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14809.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	54.92	54.37	20.35	41.16	31.26	30.54	33.8	24.32	33.72
Merged-chr3-60438867-3	chr3	60438347	60439347	+	742.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33983.0	NM_001253713	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	4.58	11.52	7.4	10.8	8.86	4.82	34.85	49.08	23.73
Merged-chr14-69862682-3	chr14	69862192	69863192	+	742.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	L2a|LINE|L2	22285.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	2.86	1.84	5.55	5.4	1.87	0.0	5.28	1.33	1.87
Merged-chr8-3661025-2	chr8	3660531	3661531	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-4731.0	NM_026985	69189.0	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	3.43	1.84	1.85	4.05	0.47	11.25	5.28	0.44	1.25
Merged-chr11-77216190-3	chr11	77215753	77216753	+	742.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177710)	promoter-TSS (NM_177710)	-172.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	39.47	18.89	17.57	45.21	29.39	27.33	38.02	35.82	29.98
Merged-chr8-77543548-1	chr8	77543048	77544048	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5849.0	NM_001081240	102182.0	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	2.86	6.45	3.7	6.75	3.73	1.61	6.34	4.42	6.25
Merged-chr10-78054836-2	chr10	78054340	78055340	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284199)	promoter-TSS (NM_001284199)	-495.0	NM_001284198	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	2.86	0.92	1.85	3.37	2.33	0.0	5.28	0.44	2.5
Merged-chr12-3771242-2	chr12	3770747	3771747	+	742.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-35733.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	16.02	11.06	9.25	28.34	9.8	23.31	28.52	24.32	12.49
Merged-chr3-105052262-3	chr3	105051772	105052772	+	742.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	681.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	148.16	152.06	146.14	110.65	86.3	115.75	182.72	246.73	102.42
Merged-chr4-139201976-2	chr4	139201434	139202434	+	742.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	7823.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	104.11	111.97	84.17	72.19	50.85	50.64	113.01	96.39	80.56
Merged-chr4-62697625-2	chr4	62697123	62698123	+	742.174988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 12 of 15)	intron (NM_134257, intron 12 of 15)	23649.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.44	2.3	3.7	6.07	1.4	0.0	5.28	0.0	1.25
Merged-chr6-52424653-3	chr6	52424158	52425158	+	742.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67793.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	14.3	22.58	13.87	23.62	14.46	20.09	10.56	13.71	8.74
Merged-chr9-121536290-3	chr9	121535783	121536783	+	742.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-40589.0	NM_031161	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	10.87	4.15	7.4	8.1	6.53	12.06	7.39	6.19	6.25
Merged-chr1-191421183-2	chr1	191420684	191421684	+	742.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24143.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.01	8.75	5.55	10.8	5.13	5.63	13.73	11.05	19.36
Merged-chr8-41600440-2	chr8	41599960	41600960	+	742.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-183342.0	NM_013522	14300.0	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	1.72	5.99	0.0	12.82	10.26	20.09	9.51	3.1	1.25
Merged-chr1-165587896-3	chr1	165587399	165588399	+	742.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46642.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	12.59	12.9	1.85	13.49	12.13	9.65	12.67	11.94	8.74
Merged-chr4-46611361-2	chr4	46610852	46611852	+	742.075012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198664, intron 9 of 12)	intron (NM_198664, intron 9 of 12)	-9423.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.15	2.3	0.92	4.72	0.93	0.8	3.17	0.88	3.75
Merged-chr7-90017347-3	chr7	90016824	90017824	+	742.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-11835.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	93.24	101.83	52.72	120.77	83.97	119.76	98.23	111.43	61.2
Merged-chr19-53906353-3	chr19	53905919	53906919	+	742.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168491, intron 1 of 11)	B3A|SINE|B2	3068.0	NM_001168491	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	32.04	16.13	19.42	17.54	11.2	24.11	30.63	19.01	20.61
Merged-chr18-6335455-1	chr18	6334955	6335955	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-93931.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	2.86	2.76	3.7	3.37	2.33	1.61	1.06	3.1	7.49
Merged-chr6-28410190-1	chr6	28409690	28410690	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	11534.0	NM_028900	74375.0	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	4.0	4.15	3.7	3.37	7.0	1.61	6.34	3.1	6.25
Merged-chr10-80623125-1	chr10	80622625	80623625	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134002, intron 1 of 10)	intron (NM_134002, intron 1 of 10)	345.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	331.79	205.97	147.07	316.44	143.22	141.47	298.9	253.8	136.15
Merged-chr10-85003713-1	chr10	85003213	85004213	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183172, intron 9 of 9)	intron (NM_183172, intron 9 of 9)	86100.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	8.01	5.99	7.4	12.14	7.0	8.04	3.17	4.42	1.25
Merged-chr11-62847006-1	chr11	62846506	62847506	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291441)	promoter-TSS (NM_001291441)	-117.0	NM_001033669	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	30.89	34.56	12.95	23.62	20.53	20.9	11.62	23.88	19.36
Merged-chr15-84120804-1	chr15	84120304	84121304	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029427, intron 2 of 9)	intron (NM_029427, intron 2 of 9)	2371.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	3.43	0.92	1.85	0.0	3.27	0.0	1.06	2.21	2.5
Merged-chr10-15300793-2	chr10	15300295	15301295	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-490982.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	19.45	23.96	17.57	14.84	13.53	24.92	24.29	15.48	6.87
Merged-chr13-20142082-1	chr13	20141582	20142582	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	51575.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	10.87	7.37	12.02	8.77	4.67	1.61	5.28	8.4	8.74
Merged-chr15-31465959-1	chr15	31465459	31466459	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 23 of 25)	intron (NM_172606, intron 23 of 25)	-12270.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	13.73	17.05	9.25	14.84	17.73	20.9	10.56	20.34	16.24
Merged-chr14-72600541-3	chr14	72600060	72601060	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	109443.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	69.22	84.78	70.3	97.83	86.3	85.2	103.51	131.32	53.08
Merged-chr10-127261915-2	chr10	127261403	127262403	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039000, intron 1 of 28)	MIRb|SINE|MIR	1460.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	13.73	8.29	1.85	13.49	14.93	12.86	13.73	14.59	5.62
Merged-chr1-166254166-1	chr1	166253666	166254666	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164528)	promoter-TSS (NM_001164528)	27.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	1.72	1.38	0.0	2.02	0.93	0.0	2.11	0.0	0.0
Merged-chr19-17326720-1	chr19	17326220	17327220	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001136484, exon 3 of 3)	3' UTR (NM_001136484, exon 3 of 3)	12785.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	5.15	9.22	9.25	5.4	7.0	13.66	17.96	16.8	11.24
Merged-chr1-161361844-2	chr1	161361354	161362354	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33584.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	8.01	1.84	3.7	13.49	5.6	0.8	4.22	1.33	1.25
Merged-chr16-31878767-2	chr16	31878273	31879273	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013900)	promoter-TSS (NM_013900)	-37.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	2.29	1.84	3.7	6.07	1.4	3.22	0.0	1.33	1.25
Merged-chr11-16752153-1	chr11	16751653	16752653	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007912)	promoter-TSS (NM_007912)	-50.0	NM_207655	13649.0	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	5.72	2.3	5.55	3.37	2.33	0.0	3.17	0.0	2.5
Merged-chr3-67576924-2	chr3	67576405	67577405	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5863.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	10.3	4.15	9.25	7.42	7.0	6.43	8.45	14.15	3.75
Merged-chr11-101983499-1	chr11	101982999	101983999	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028207, intron 1 of 2)	intron (NM_028207, intron 1 of 2)	1292.0	NM_028207	72349.0	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	327.21	300.89	187.77	175.43	144.15	147.09	224.97	288.74	153.01
Merged-chr15-34060887-1	chr15	34060387	34061387	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21832.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.29	0.92	1.85	1.35	8.86	0.0	1.06	2.65	3.75
Merged-chr8-82984678-1	chr8	82984178	82985178	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	121322.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.15	4.61	12.02	13.49	5.13	7.23	14.79	11.94	6.25
Merged-chr9-102852399-1	chr9	102851899	102852899	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	Lx9|LINE|L1	17479.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	14.87	11.06	4.62	11.47	5.6	20.9	3.17	2.21	1.25
Merged-chr18-21000443-1	chr18	20999943	21000943	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303005)	promoter-TSS (NM_001303005)	-857.0	NM_019706	56515.0	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	8.01	12.44	0.0	10.8	11.2	6.43	17.96	13.27	5.62
Merged-chr18-53915193-1	chr18	53914693	53915693	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	53080.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	12.01	6.45	7.4	23.62	16.33	12.06	5.28	2.65	3.12
Merged-chr6-31321697-1	chr6	31321197	31322197	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	77076.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	13.16	4.15	4.62	16.87	6.06	9.65	9.51	5.75	0.62
Merged-chr19-56547610-1	chr19	56547110	56548110	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025811)	promoter-TSS (NM_025811)	512.0	NM_001360437	55947.0	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	45.19	41.93	28.67	61.4	57.38	51.44	55.98	54.39	24.36
Merged-chr7-90213648-1	chr7	90213148	90214148	+	742.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51784.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	29.75	29.49	13.87	39.13	26.59	32.96	50.7	42.45	33.1
Merged-chr6-50000975-1	chr6	50000475	50001475	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109266.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	8.01	4.15	2.77	4.72	6.06	5.63	5.28	5.31	3.75
Merged-chr4-8380890-1	chr4	8380390	8381390	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-141849.0	NM_007592	12319.0	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	5.15	0.92	0.0	4.05	2.33	0.0	0.0	1.33	3.75
Merged-chr8-82376327-1	chr8	82375827	82376827	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	MLT2B3|LTR|ERVL	26259.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	25.17	53.45	64.75	30.36	21.93	29.74	28.52	32.28	26.23
Merged-chr2-148655145-2	chr2	148654654	148655654	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17461.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	2.29	4.15	5.55	2.02	1.4	7.23	0.0	3.1	1.25
Merged-chr16-48829266-1	chr16	48828766	48829766	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12410.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	11.44	15.21	3.7	12.14	7.46	16.88	9.51	1.77	12.49
Merged-chr5-140738402-1	chr5	140737902	140738902	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 2 of 7)	B4A|SINE|B4	14275.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	25.74	27.65	48.1	29.01	23.33	19.29	17.96	27.86	5.62
Merged-chr8-57479861-1	chr8	57479361	57480361	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7999.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	5.15	0.92	0.0	6.75	5.13	1.61	3.17	3.1	5.0
Merged-chr10-120227802-2	chr10	120227280	120228280	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025431, intron 1 of 2)	intron (NM_025431, intron 1 of 2)	720.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	56.06	49.76	26.82	52.63	76.97	61.09	84.49	69.42	39.35
Merged-chr10-42123012-2	chr10	42122519	42123519	+	742.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104637.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.58	4.61	3.7	2.7	2.8	1.61	6.34	0.88	1.87
Merged-chr18-36687906-1	chr18	36687406	36688406	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172831, intron 9 of 12)	URR1B|DNA|hAT-Charlie	8019.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	20.59	11.52	3.7	6.07	15.39	10.45	1.06	0.44	3.75
Merged-chr4-53232591-1	chr4	53232091	53233091	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13605.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	12.59	10.6	7.4	12.82	20.99	20.09	8.45	15.03	16.24
Merged-chr8-40410635-1	chr8	40410135	40411135	+	742.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	4.0	1.38	1.85	6.07	3.73	4.02	3.17	4.42	6.25
Merged-chr7-133122276-4	chr7	133121812	133122812	+	741.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 1 of 10)	CpG	1171.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	41.76	32.25	61.05	51.28	42.92	52.25	61.26	32.28	46.22
Merged-chr13-101797216-2	chr13	101796714	101797714	+	741.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28997.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	12.59	12.9	17.57	20.24	18.66	19.29	3.17	6.63	17.49
Merged-chr8-10794798-3	chr8	10794293	10795293	+	741.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87661.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	12.59	14.75	30.52	18.22	17.26	28.94	8.45	9.73	7.49
Merged-chr11-97900003-3	chr11	97899502	97900502	+	741.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15848.0	NM_001081435	72973.0	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	6.29	3.69	3.7	3.37	1.4	1.61	7.39	0.44	2.5
Merged-chr5-34526989-2	chr5	34526467	34527467	+	741.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1183.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	49.77	50.69	48.1	33.74	43.39	90.83	46.47	42.45	46.84
Merged-chr4-58304746-2	chr4	58304247	58305247	+	741.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037130, intron 5 of 12)	intron (NM_001037130, intron 5 of 12)	18785.0	NM_010944	18198.0	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	12.01	6.91	11.1	4.72	4.67	7.23	2.11	0.44	1.25
Merged-chr9-114794708-2	chr9	114794194	114795194	+	741.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-12701.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	57.21	61.75	45.32	52.63	50.85	28.13	151.03	129.55	43.72
Merged-chr7-75739258-2	chr7	75738757	75739757	+	741.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 29 of 36)	intron (NM_029332, intron 29 of 36)	-109081.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.43	3.23	7.4	2.7	5.6	12.86	6.34	3.1	5.0
Merged-chr11-31850530-3	chr11	31850009	31851009	+	741.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20431.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	9.72	8.29	12.02	12.82	12.6	23.31	8.45	3.98	6.87
Merged-chr8-64941639-3	chr8	64941120	64942120	+	741.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5565.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	5.72	1.84	0.0	2.7	3.73	7.23	0.0	2.65	1.25
Merged-chr2-127248563-2	chr2	127248086	127249086	+	741.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025296)	promoter-TSS (NM_025296)	611.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	113.84	81.1	70.3	96.48	76.97	79.58	120.41	84.45	47.46
Merged-chr1-180331530-2	chr1	180331068	180332068	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 1 of 7)	CpG	-1019.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	34.32	27.19	41.62	33.74	18.66	50.64	34.85	14.15	15.61
Merged-chr3-94366946-2	chr3	94366408	94367408	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4464.0	NM_001136117	271944.0	Mm.271006	NM_001136117	ENSMUSG00000091648	C2cd4d	Gm659	C2 calcium-dependent domain containing 4D	protein-coding	5.15	0.0	0.0	3.37	1.4	0.8	2.11	4.42	1.25
Merged-chr6-114854342-1	chr6	114853842	114854842	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	MTC|LTR|ERVL-MaLR	67479.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.0	5.53	14.8	8.1	3.27	13.66	5.28	3.54	9.99
Merged-chr15-76872530-1	chr15	76872030	76873030	+	741.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1095.0	NM_001007568	71591.0	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	9.72	6.91	3.7	7.42	8.4	4.82	9.51	5.75	9.99
Merged-chr6-34927340-3	chr6	34926842	34927842	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009292, intron 1 of 8)	intron (NM_009292, intron 1 of 8)	6394.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	9.15	0.46	1.85	4.72	1.87	0.0	4.22	1.33	2.5
Merged-chr16-4907629-3	chr16	4907130	4908130	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	21530.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	94.39	86.63	94.35	81.64	73.71	68.32	91.89	127.79	66.2
Merged-chr15-73675667-3	chr15	73675141	73676141	+	741.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31864.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	4.58	3.23	7.4	4.72	2.8	3.22	3.17	2.65	5.0
Merged-chr7-99139962-3	chr7	99139462	99140462	+	741.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1182.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	98.97	87.55	120.24	121.45	83.04	109.32	125.69	130.0	100.55
Merged-chr5-8807339-2	chr5	8806832	8807832	+	741.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 4 of 27)	intron (NM_011075, intron 4 of 27)	-8809.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	5.72	12.9	2.77	28.34	12.6	22.51	5.28	5.75	8.12
Merged-chr17-25117433-2	chr17	25116943	25117943	+	741.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1476.0	NM_001163661	71718.0	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	5.15	5.99	9.25	10.8	10.26	19.29	7.39	4.86	1.25
Merged-chr1-173580029-1	chr1	173579529	173580529	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	19245.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.0	0.0	0.0	26.31	33.12	25.72	44.36	45.99	19.98
Merged-chr10-17485614-1	chr10	17485114	17486114	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-237614.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.72	8.29	12.02	12.82	14.46	17.68	6.34	12.38	0.0
Merged-chr7-35595056-1	chr7	35594556	35595556	+	741.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152519, intron 2 of 28)	intron (NR_152519, intron 2 of 28)	8809.0	NR_152519	245886.0	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	7.44	12.44	9.25	10.8	7.0	12.86	2.11	0.0	3.75
Merged-chr12-4548830-3	chr12	4548325	4549325	+	741.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24712.0	NR_136891	102634330.0	Mm.402324	NR_136891	ENSMUSG00000112422	Gm31938	-	predicted gene, 31938	ncRNA	8.01	11.52	3.7	6.75	7.0	11.25	8.45	5.31	0.62
Merged-chr8-37898206-1	chr8	37897706	37898706	+	741.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	353996.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	1.14	2.3	0.0	5.4	2.33	1.61	9.51	14.15	13.74
Merged-chr3-84356803-2	chr3	84356302	84357302	+	741.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040752, intron 3 of 3)	RSINE1|SINE|B4	23119.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.43	1.84	5.55	5.4	2.8	1.61	5.28	1.77	2.5
Merged-chr8-26696919-2	chr8	26696414	26697414	+	741.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	127509.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	61.21	90.31	67.52	64.77	63.91	89.22	123.57	184.83	101.17
Merged-chr17-45608624-2	chr17	45608121	45609121	+	741.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-6519.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	2.29	4.15	0.0	7.42	1.87	6.43	4.22	1.33	3.12
Merged-chr10-75797835-3	chr10	75797348	75798348	+	741.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358778)	promoter-TSS (NM_001358778)	-117.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	8.58	0.92	5.55	9.45	2.33	4.82	5.28	2.65	2.5
Merged-chr7-101366513-3	chr7	101366024	101367024	+	741.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	intron (NM_001040111, intron 1 of 33)	-11598.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	42.9	23.04	44.4	27.66	22.86	49.03	43.3	15.03	17.49
Merged-chr13-59677015-3	chr13	59676509	59677509	+	741.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1225.0	NM_027307	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	3.43	4.61	0.0	3.37	3.73	5.63	6.34	3.54	14.99
Merged-chr1-144197879-3	chr1	144197381	144198381	+	741.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20509.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	6.29	6.45	1.85	4.72	5.13	4.82	10.56	10.61	5.0
Merged-chr13-89742394-2	chr13	89741900	89742900	+	741.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019389, exon 1 of 14)	5' UTR (NM_019389, exon 1 of 14)	112.0	NM_001081249	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.0	0.92	4.62	3.37	3.27	4.02	4.22	0.0	5.0
Merged-chr8-79587479-2	chr8	79586982	79587982	+	741.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52194.0	NM_001256033	73945.0	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	3.43	2.3	1.85	5.4	2.33	0.0	7.39	2.65	0.0
Merged-chr14-120323286-2	chr14	120322772	120323772	+	741.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 1 of 8)	intron (NM_001360376, intron 1 of 8)	16820.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	10.3	11.06	5.55	18.22	12.6	8.04	15.84	23.43	10.62
Merged-chr2-38378466-3	chr2	38377994	38378994	+	741.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27186.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	3.43	1.38	3.7	3.37	4.67	4.82	3.17	0.44	2.5
Merged-chr1-84437765-3	chr1	84437269	84438269	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-153124.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	21.17	11.52	11.1	12.82	11.66	20.09	8.45	12.82	11.87
Merged-chr15-58933305-3	chr15	58932828	58933828	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023172)	promoter-TSS (NM_023172)	402.0	NM_175151	69694.0	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	231.11	201.36	148.92	222.66	198.73	180.85	215.46	206.49	119.28
Merged-chr18-4790496-3	chr18	4790016	4791016	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-21970.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.29	7.83	3.7	4.72	6.06	12.86	11.62	2.65	5.0
Merged-chr16-36724372-3	chr16	36723866	36724866	+	741.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 7 of 7)	intron (NM_001285788, intron 7 of 7)	30388.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	3.43	11.52	1.85	8.1	7.0	7.23	8.45	12.82	5.62
Merged-chr11-79920062-2	chr11	79919568	79920568	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42319.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.0	3.69	0.0	6.75	0.93	1.61	0.0	1.33	5.0
Merged-chr7-107611013-1	chr7	107610513	107611513	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163557, intron 1 of 25)	RMER19B|LTR|ERVK	4169.0	NM_001163557	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	7.44	10.6	3.7	16.19	11.2	8.04	15.84	15.92	12.49
Merged-chr2-25166494-2	chr2	25165986	25166986	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14272.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.0	2.3	2.77	2.7	1.4	1.61	3.17	2.65	1.25
Merged-chr9-22309826-1	chr9	22309326	22310326	+	741.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-2188.0	NM_145612	235050.0	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	21.17	21.66	12.95	22.27	14.93	8.04	48.58	53.94	31.85
Merged-chr16-87695498-1	chr16	87694998	87695998	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3456.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	2.29	3.23	11.1	2.02	3.73	1.61	6.34	1.77	6.25
Merged-chr7-19910977-1	chr7	19910477	19911477	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	10166.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	4.58	1.84	3.7	5.4	1.4	0.0	2.11	3.1	4.37
Merged-chr2-160062708-3	chr2	160062229	160063229	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46076.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	12.01	15.67	5.55	21.59	7.46	16.88	11.62	17.24	8.74
Merged-chr2-72850028-2	chr2	72849560	72850560	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36343.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	8.01	9.68	8.32	25.64	11.2	7.23	29.57	17.24	13.74
Merged-chr7-143045524-2	chr7	143045042	143046042	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110355, intron 1 of 4)	intron (NR_110355, intron 1 of 4)	-7208.0	NM_133655	12520.0	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	56.63	36.86	36.07	43.18	30.32	31.35	36.97	37.58	36.22
Merged-chr2-27688847-1	chr2	27688347	27689347	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	11646.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	179.05	199.98	152.62	178.13	185.2	185.68	159.48	184.83	120.53
Merged-chr12-80150791-2	chr12	80150302	80151302	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17958.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.58	5.53	11.1	12.82	5.6	3.22	11.62	23.43	6.25
Merged-chr19-46186711-2	chr19	46186204	46187204	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178930, intron 3 of 39)	intron (NM_178930, intron 3 of 39)	34146.0	NM_178930	107338.0	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	9.15	7.37	5.55	10.12	7.46	5.63	11.62	3.98	6.87
Merged-chr9-63930178-2	chr9	63929676	63930676	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	91883.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	9.15	5.07	1.85	3.37	1.4	3.22	5.28	3.54	1.25
Merged-chr5-65986586-1	chr5	65986086	65987086	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	17699.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	16.02	22.12	24.05	24.96	22.86	15.27	16.9	22.11	7.49
Merged-chr3-84443070-1	chr3	84442570	84443570	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001205355, exon 12 of 12)	3' UTR (NM_001205355, exon 12 of 12)	36421.0	NM_001205355	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	2.29	1.38	0.0	2.7	2.33	5.63	1.06	1.33	1.25
Merged-chr1-153754861-2	chr1	153754356	153755356	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011882, exon 4 of 9)	exon (NM_011882, exon 4 of 9)	5430.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	41.19	25.34	20.35	26.99	16.79	6.43	28.52	10.17	4.37
Merged-chr6-22453308-2	chr6	22452793	22453793	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97212.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.29	11.06	5.55	8.1	6.53	8.04	9.51	11.5	7.49
Merged-chr1-151245387-1	chr1	151244887	151245887	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99099.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	1.14	2.76	4.62	9.45	2.8	8.04	7.39	1.77	3.75
Merged-chr18-84671971-2	chr18	84671466	84672466	+	741.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 7 of 11)	intron (NM_023149, intron 7 of 11)	10093.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	8.58	5.99	14.8	8.1	7.93	10.45	8.45	5.75	5.0
Merged-chr18-50052948-1	chr18	50052448	50053448	+	741.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134131)	promoter-TSS (NM_134131)	-334.0	NM_134131	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	67.5	58.52	60.12	70.85	34.52	52.25	54.92	30.51	32.48
Merged-chr7-123019858-1	chr7	123019358	123020358	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB4|LINE|L1	49294.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	0.57	1.84	5.55	2.7	2.33	0.0	2.11	0.88	7.49
Merged-chr3-108767054-1	chr3	108766554	108767554	+	741.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177859, intron 6 of 11)	intron (NM_177859, intron 6 of 11)	27396.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	5.72	4.15	3.7	6.75	6.06	1.61	4.22	3.54	5.0
Merged-chr2-109959306-3	chr2	109958843	109959843	+	741.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	41696.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	4.0	7.83	8.32	12.82	13.06	22.51	12.67	20.34	12.49
Merged-chrX-7673910-2	chrX	7673463	7674463	+	741.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037581, exon 6 of 6)	non-coding (NR_037581, exon 6 of 6)	-2573.0	NM_019755	18824.0	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	1.72	5.07	5.55	4.05	3.27	4.82	3.17	4.42	3.75
Merged-chr11-97744201-4	chr11	97743634	97744634	+	741.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106180)	promoter-TSS (NR_106180)	570.0	NM_054051	108083.0	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	54.35	46.54	79.55	64.77	62.51	81.18	66.54	85.78	48.09
Merged-chr11-3910766-3	chr11	3910256	3911256	+	741.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153142, intron 1 of 1)	intron (NM_153142, intron 1 of 1)	3908.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	5.15	2.3	10.17	1.35	3.73	4.82	0.0	0.44	8.12
Merged-chr12-55315435-3	chr12	55314906	55315906	+	741.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025373, intron 3 of 6)	B1F|SINE|Alu	-12406.0	NM_021529	59032.0	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	6.29	3.69	0.0	1.35	4.67	3.22	1.06	1.77	2.5
Merged-chr18-32378127-4	chr18	32377548	32378548	+	741.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045403, exon 1 of 3)	non-coding (NR_045403, exon 1 of 3)	236.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	59.49	69.12	55.5	66.8	58.78	49.03	76.05	62.79	39.97
Merged-chr7-3825781-2	chr7	3825292	3826292	+	741.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289428, intron 11 of 12)	intron (NM_001289428, intron 11 of 12)	19259.0	NM_011089	18725.0	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	14.87	16.13	3.7	12.14	10.26	10.45	22.18	9.73	12.49
Merged-chr2-30928502-3	chr2	30927992	30928992	+	741.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24509.0	NM_133673	30934.0	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	77.8	58.52	39.77	59.38	41.99	73.14	64.43	51.73	38.72
Merged-chr2-153338882-2	chr2	153338380	153339380	+	741.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6930.0	NR_040318	72326.0	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	28.03	22.58	22.2	24.96	34.52	32.15	21.12	9.73	9.37
Merged-chr4-152029198-2	chr4	152028693	152029693	+	741.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031867, intron 5 of 5)	B2_Mm2|SINE|B2	-1522.0	NM_133879	100090.0	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3|TZAP	zinc finger and BTB domain containing 48	protein-coding	2.86	3.23	1.85	5.4	2.8	0.0	7.39	8.84	3.75
Merged-chr2-70971251-2	chr2	70970752	70971752	+	741.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	intron (NM_145524, intron 7 of 9)	47122.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	40.62	31.33	44.4	68.82	54.58	68.32	77.1	81.8	59.33
Merged-chr4-99185537-3	chr4	99185037	99186037	+	741.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8397.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	39.47	72.8	71.22	45.88	51.32	36.97	70.76	87.55	63.08
Merged-chr11-116464055-2	chr11	116463576	116464576	+	741.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-9729.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	2.29	2.3	0.0	4.05	1.87	2.41	2.11	1.77	0.62
Merged-chr15-79396936-3	chr15	79396470	79397470	+	741.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172608, intron 1 of 8)	intron (NM_172608, intron 1 of 8)	5949.0	NM_001253817	223693.0	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	10.87	6.91	7.4	12.14	8.86	10.45	6.34	1.77	1.25
Merged-chr13-18795074-3	chr13	18794596	18795596	+	741.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172120, intron 7 of 28)	intron (NM_172120, intron 7 of 28)	77804.0	NM_172120	218035.0	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	31.46	47.92	31.45	36.43	30.32	21.7	29.57	42.01	11.24
Merged-chr8-117346065-2	chr8	117345571	117346571	+	741.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3099.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	14.3	9.22	10.17	20.92	11.2	10.45	5.28	3.54	1.25
Merged-chr13-64254321-2	chr13	64253822	64254822	+	741.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	B1_Mus2|SINE|Alu	5622.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	2.86	0.0	1.85	5.4	1.87	0.8	2.11	3.54	7.49
Merged-chr8-61607810-2	chr8	61607316	61608316	+	741.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-16647.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	74.94	77.41	69.37	48.58	65.31	63.5	44.36	59.69	56.83
Merged-chr6-122853745-2	chr6	122853249	122854249	+	741.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009779, intron 1 of 1)	intron (NM_009779, intron 1 of 1)	2408.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	207.08	300.43	121.17	185.55	246.78	128.61	180.61	267.51	166.75
Merged-chr4-135286972-3	chr4	135286469	135287469	+	741.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14209.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	40.62	31.33	24.97	18.89	16.79	20.9	13.73	9.73	23.11
Merged-chr3-22143409-3	chr3	22142911	22143911	+	741.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	66759.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	13.73	9.68	16.65	9.45	7.46	2.41	15.84	4.86	5.0
Merged-chr6-51756007-3	chr6	51755532	51756532	+	741.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210739.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	3.43	10.14	6.47	7.42	4.2	4.82	5.28	6.19	8.74
Merged-chr9-70237766-2	chr9	70237257	70238257	+	741.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	30407.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	13.73	22.12	21.27	25.64	24.26	22.51	8.45	5.75	5.0
Merged-chr10-26996176-2	chr10	26995669	26996669	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008481, intron 57 of 63)	intron (NM_008481, intron 57 of 63)	223657.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	6.86	2.3	1.85	1.35	6.06	0.8	5.28	0.44	3.75
Merged-chr11-98294669-2	chr11	98294161	98295161	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	32055.0	NR_039579	100628613.0		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	5.15	1.38	2.77	3.37	0.0	0.0	4.22	0.88	2.5
Merged-chr1-85841135-4	chr1	85840722	85841722	+	741.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	RLTR14|LTR|ERV1	47205.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	41.76	47.0	43.47	55.33	38.72	45.82	33.8	33.16	43.72
Merged-chr2-73484809-3	chr2	73484292	73485292	+	741.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	961.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	68.65	69.58	86.02	82.32	90.04	98.87	107.73	107.89	56.83
Merged-chr2-164083819-3	chr2	164083326	164084326	+	741.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021420, intron 3 of 10)	intron (NM_021420, intron 3 of 10)	9648.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	116.13	119.34	86.95	106.61	88.64	102.88	83.44	98.16	88.68
Merged-chr6-40689388-3	chr6	40688895	40689895	+	741.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171003, intron 31 of 47)	intron (NM_001171003, intron 31 of 47)	60564.0	NM_001171003	232714.0	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	1.72	4.15	5.55	6.07	0.47	3.22	2.11	3.1	6.25
Merged-chr7-35117155-2	chr7	35116637	35117637	+	741.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2156.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	30.89	25.34	17.57	56.0	40.12	20.09	11.62	11.05	29.98
Merged-chr2-44988786-3	chr2	44988330	44989330	+	741.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001355289, exon 11 of 11)	exon (NM_001355289, exon 11 of 11)	34347.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.58	5.99	3.7	4.05	1.87	9.65	3.17	2.21	6.87
Merged-chr16-76371009-5	chr16	76370566	76371566	+	741.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	1983.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	100.68	133.17	48.1	95.81	69.04	73.14	146.81	138.84	73.07
Merged-chr5-29388369-3	chr5	29387886	29388886	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9996.0	NM_020295	56873.0	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	7.44	6.45	1.85	6.07	3.27	8.04	6.34	2.21	1.25
Merged-chr2-117343718-3	chr2	117343182	117344182	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011246)	promoter-TSS (NM_011246)	-805.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	89.81	88.01	47.17	93.79	55.05	26.53	127.8	110.98	46.84
Merged-chr1-165763014-3	chr1	165762528	165763528	+	741.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011804)	promoter-TSS (NM_011804)	-730.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	75.51	62.21	98.97	99.86	105.43	106.1	86.61	124.25	53.08
Merged-chr11-98457897-3	chr11	98457372	98458372	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	11038.0	NM_010346	14786.0	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	8.01	1.84	9.25	4.05	5.13	0.0	3.17	1.33	2.5
Merged-chr1-193002495-1	chr1	193001995	193002995	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301370, intron 2 of 8)	intron (NM_001301370, intron 2 of 8)	33280.0	NM_001301370	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.29	3.69	5.55	2.02	1.87	0.0	4.22	7.52	6.25
Merged-chr18-78830185-1	chr18	78829685	78830685	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	Tigger7|DNA|TcMar-Tigger	-233235.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	5.72	2.3	0.0	2.7	4.2	1.61	3.17	2.21	6.25
Merged-chr17-36123560-1	chr17	36123060	36124060	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-2116.0	NR_046286	15024.0	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	1.72	6.45	1.85	0.0	0.0	0.0	49.64	38.91	13.74
Merged-chr2-27247382-2	chr2	27246886	27247886	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138665)	promoter-TSS (NM_138665)	-83.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	12.01	2.76	1.85	6.75	4.2	3.22	3.17	5.31	7.49
Merged-chr17-71161784-2	chr17	71161284	71162284	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21748.0	NM_001357791	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.58	10.14	12.95	17.54	4.67	7.23	12.67	5.31	9.99
Merged-chr18-46213306-1	chr18	46212806	46213806	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178872)	promoter-TSS (NM_178872)	-699.0	NM_178872	28105.0	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	4.0	4.15	0.0	2.02	2.33	3.22	3.17	7.07	6.25
Merged-chr6-97486984-1	chr6	97486484	97487484	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	836.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	206.51	245.6	123.02	230.08	213.66	168.8	275.66	353.73	176.12
Merged-chr17-80131647-1	chr17	80131147	80132147	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176963, intron 1 of 6)	intron (NM_176963, intron 1 of 6)	4176.0	NM_176963	319625.0	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	17.16	10.14	5.55	30.36	19.13	1.61	20.07	19.46	9.99
Merged-chr5-129008124-2	chr5	129007618	129008618	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152615, intron 1 of 11)	intron (NR_152615, intron 1 of 11)	454.0	NR_152615	13852.0	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	46.91	45.16	50.87	70.85	60.18	69.93	65.48	46.87	39.35
Merged-chr6-31077976-1	chr6	31077476	31078476	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14883.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	85.81	67.27	58.27	109.98	74.64	65.11	100.34	97.28	57.46
Merged-chr10-22002272-2	chr10	22001736	22002736	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7570.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	7.44	5.07	7.4	7.42	4.2	6.43	4.22	0.44	3.75
Merged-chr2-168206432-3	chr2	168205893	168206893	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310086, intron 1 of 4)	CpG	719.0	NM_009628	11538.0	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	151.02	170.95	185.92	146.41	92.84	119.76	147.87	111.87	99.92
Merged-chr8-123212041-2	chr8	123211552	123212552	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177279)	promoter-TSS (NM_177279)	736.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	86.95	80.18	49.02	88.39	68.11	66.71	128.85	124.69	36.22
Merged-chr4-108879046-1	chr4	108878546	108879546	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023537)	promoter-TSS (NM_023537)	-24.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	7.44	2.76	3.7	2.02	4.2	0.0	4.22	0.44	4.37
Merged-chr4-48585638-3	chr4	48585110	48586110	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001356272, exon 1 of 10)	exon (NM_001356272, exon 1 of 10)	436.0	NM_021436	230157.0	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|TR-1|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	6.86	4.61	12.02	12.14	3.27	10.45	6.34	6.19	8.74
Merged-chr10-96294928-2	chr10	96294421	96295421	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	68714.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	10.87	9.68	3.7	4.72	5.13	4.02	6.34	3.54	6.25
Merged-chr8-80483433-1	chr8	80482933	80483933	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10612.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	6.86	2.76	0.0	5.4	2.8	0.0	3.17	1.33	5.62
Merged-chr10-61370595-2	chr10	61370101	61371101	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	12922.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	27.46	35.02	28.67	28.34	34.06	36.97	40.14	49.96	33.72
Merged-chr17-44261959-1	chr17	44261459	44262459	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	73387.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	5.15	0.0	0.0	2.02	0.47	0.0	1.06	0.44	3.75
Merged-chr11-118477965-1	chr11	118477465	118478465	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153103, intron 1 of 13)	intron (NR_153103, intron 1 of 13)	1133.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	49.77	59.9	49.95	94.46	123.62	92.44	111.96	129.11	69.95
Merged-chr15-38472317-1	chr15	38471817	38472817	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18230.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	79.52	83.4	59.2	83.66	85.37	81.18	107.73	79.59	48.71
Merged-chr2-145906081-1	chr2	145905581	145906581	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026425, intron 1 of 5)	B2_Mm1t|SINE|B2	2840.0	NM_001141965	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	5.72	8.29	3.7	4.05	3.27	3.22	6.34	4.86	9.99
Merged-chr19-37608647-1	chr19	37608147	37609147	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175353, intron 17 of 21)	MTE2b|LTR|ERVL-MaLR	58229.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	16.02	8.75	20.35	12.14	7.0	15.27	5.28	4.86	5.0
Merged-chr7-125630520-1	chr7	125630020	125631020	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021887, intron 7 of 8)	intron (NM_021887, intron 7 of 8)	27091.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	2.29	4.15	5.55	8.77	4.2	6.43	5.28	0.88	4.37
Merged-chr4-141160434-1	chr4	141159934	141160934	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	12512.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	62.93	77.41	67.52	60.05	53.18	57.07	92.94	99.49	69.95
Merged-chr5-67297626-2	chr5	67297120	67298120	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9335.0	NM_178651	109108.0	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	51.48	100.45	74.92	58.03	55.51	51.44	59.15	84.01	46.84
Merged-chr11-61176494-1	chr11	61175994	61176994	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1435.0	NM_001004143	216825.0	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	4.58	2.3	1.85	7.42	9.33	8.04	7.39	4.86	3.75
Merged-chr6-108331385-1	chr6	108330885	108331885	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	118289.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	20.02	15.21	21.27	22.94	27.99	23.31	8.45	6.19	2.5
Merged-chr17-56630408-1	chr17	56629908	56630908	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2265.0	NM_175350	106757.0	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	cation channel sperm associated auxiliary subunit delta	protein-coding	15.45	15.67	12.95	35.76	23.79	27.33	9.51	9.73	5.0
Merged-chr1-120451673-1	chr1	120451173	120452173	+	741.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53351.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	9.15	9.68	24.97	4.72	6.53	9.65	14.79	5.75	16.24
Merged-chr4-6352020-1	chr4	6351520	6352520	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	FordPrefect|DNA|hAT-Tip100	-13660.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	5.15	4.61	1.85	3.37	3.73	1.61	7.39	4.86	2.5
Merged-chr10-41684742-1	chr10	41684242	41685242	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358562, intron 4 of 47)	intron (NM_001358562, intron 4 of 47)	31721.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	2.29	1.84	0.0	2.02	4.2	1.61	3.17	1.33	6.25
Merged-chr5-114937054-1	chr5	114936554	114937554	+	741.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_145209, exon 7 of 7)	exon (NM_145209, exon 7 of 7)	-5148.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	9.72	2.3	20.35	4.72	0.93	1.61	12.67	8.4	6.87
Merged-chr3-144628135-1	chr3	144627635	144628635	+	741.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57708.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	8.01	5.99	3.7	22.94	15.86	14.47	3.17	6.19	7.49
Merged-chr11-114851794-3	chr11	114851335	114852335	+	740.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147217)	promoter-TSS (NM_147217)	-195.0	NM_147217	70355.0	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	109.26	98.15	103.59	132.24	128.29	147.9	92.94	129.55	66.2
Merged-chr18-60381925-3	chr18	60381420	60382420	+	740.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021792, intron 2 of 2)	intron (NM_021792, intron 2 of 2)	5891.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	66.93	98.61	51.8	43.18	50.38	104.49	53.87	59.69	56.83
Merged-chr4-126553287-3	chr4	126552789	126553789	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3691.0	NM_175554	269582.0	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	13.16	7.83	9.25	16.87	7.93	4.82	7.39	3.54	7.49
Merged-chr1-156002035-3	chr1	156001527	156002527	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28772.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	33.75	40.55	20.35	29.69	16.33	19.29	100.34	108.33	36.85
Merged-chr9-102779693-3	chr9	102779191	102780191	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40043.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	1.14	1.84	0.0	0.67	2.8	3.22	1.06	3.54	3.75
Merged-chr6-85160393-3	chr6	85159906	85160906	+	740.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22642.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	2.29	1.38	0.0	1.35	1.87	1.61	1.06	1.33	1.25
Merged-chr19-5433152-3	chr19	5432640	5433640	+	740.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7996.0	NM_001256515	107242.0	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	36.04	17.05	40.7	27.66	23.79	36.17	34.85	29.18	48.09
Merged-chr10-13941642-3	chr10	13941124	13942124	+	740.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24451.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.86	5.99	5.55	4.72	2.33	4.82	5.28	1.77	5.0
Merged-chr17-84186588-4	chr17	84186055	84187055	+	740.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	1392.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	48.05	45.16	49.95	66.8	58.78	66.71	105.62	47.31	39.35
Merged-chr15-78942864-3	chr15	78942336	78943336	+	740.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133800)	TTS (NM_133800)	-4888.0	NM_001039156	110253.0	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	5.72	2.76	1.85	2.7	1.4	1.61	3.17	2.21	2.5
Merged-chr3-116184065-1	chr3	116183565	116184565	+	740.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54377.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	22.88	16.13	22.2	56.0	24.72	48.23	23.24	22.11	10.62
Merged-chr12-118198926-2	chr12	118198424	118199424	+	740.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010060, exon 1 of 82)	5' UTR (NM_010060, exon 1 of 82)	119.0	NM_010060	13411.0	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	6.86	3.69	1.85	0.67	5.13	8.04	1.06	1.33	7.49
Merged-chr9-113793350-3	chr9	113792868	113793868	+	740.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286603)	promoter-TSS (NM_001286603)	38.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	111.55	151.6	62.9	120.77	137.62	104.49	130.97	156.97	51.84
Merged-chr5-140663182-3	chr5	140662738	140663738	+	740.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028833)	TTS (NM_028833)	-14207.0	NM_175274	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	2.86	3.23	6.47	6.75	3.73	3.22	14.79	3.98	2.5
Merged-chr7-134689270-3	chr7	134688758	134689758	+	740.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18571.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	14.87	12.9	10.17	15.52	6.53	12.86	13.73	12.38	14.36
Merged-chr10-78095331-3	chr10	78094815	78095815	+	740.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25947.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	7.44	8.75	12.02	12.14	3.73	15.27	8.45	11.94	14.36
Merged-chr16-44725105-3	chr16	44724591	44725591	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145972, intron 1 of 8)	intron (NM_145972, intron 1 of 8)	790.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	133.29	147.91	124.87	133.59	134.35	127.0	183.78	155.2	98.68
Merged-chr1-64675665-1	chr1	64675165	64676165	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14994.0	NR_038009	69941.0	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	5.72	4.15	2.77	5.4	4.67	1.61	4.22	4.42	1.25
Merged-chr15-8442980-3	chr15	8442476	8443476	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	1487.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	78.37	126.25	74.92	74.22	78.37	77.97	102.45	106.56	99.92
Merged-chr14-122464668-3	chr14	122464205	122465205	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	953.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	4.58	2.76	1.85	6.07	1.87	1.61	5.28	1.33	3.75
Merged-chr1-138186914-1	chr1	138186414	138187414	+	740.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11609.0	NM_001268286	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	9.15	5.99	7.4	15.52	7.0	9.65	7.39	4.86	1.25
Merged-chr11-116446174-3	chr11	116445683	116446683	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033267, intron 7 of 13)	intron (NM_001033267, intron 7 of 13)	8164.0	NM_001033267	217341.0	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	2.29	4.61	1.85	9.45	1.87	0.8	25.35	13.27	11.87
Merged-chr11-80300964-3	chr11	80300437	80301437	+	740.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139228)	promoter-TSS (NM_139228)	25.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	8.01	6.91	1.85	7.42	2.8	9.65	9.51	4.86	6.87
Merged-chr8-94171677-2	chr8	94171165	94172165	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-953.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	15.45	11.06	1.85	36.43	17.26	3.22	20.07	9.29	0.62
Merged-chr2-132264201-2	chr2	132263709	132264709	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	1061.0	NM_138651	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	47.48	56.68	54.57	70.85	72.31	66.71	89.78	98.6	52.46
Merged-chr2-148527938-2	chr2	148527435	148528435	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84400.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	21.74	25.8	5.55	34.41	29.86	28.13	39.08	38.47	26.85
Merged-chr1-86402476-2	chr1	86401987	86402987	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13126.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	16.02	14.28	24.05	21.59	18.66	25.72	17.96	29.63	25.61
Merged-chr19-21736463-2	chr19	21735980	21736980	+	740.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41860.0	NM_001033759	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	10.3	7.83	5.55	7.42	9.8	9.65	16.9	7.07	7.49
Merged-chr18-4352402-3	chr18	4351922	4352922	+	740.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	531.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	177.34	279.24	143.37	213.89	218.33	203.36	261.93	329.86	144.89
Merged-chr9-94716890-2	chr9	94716374	94717374	+	740.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177909, intron 4 of 15)	Lx9|LINE|L1	-34955.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	8.01	9.68	2.77	9.45	7.93	8.04	4.22	4.86	11.24
Merged-chr5-52168655-3	chr5	52168154	52169154	+	740.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042620, intron 5 of 11)	intron (NM_001042620, intron 5 of 11)	21892.0	NR_104311	13204.0	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	5.15	14.28	3.7	4.72	6.06	8.04	6.34	6.63	11.87
Merged-chr4-117682234-2	chr4	117681739	117682739	+	740.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023178)	promoter-TSS (NM_023178)	-14.0	NM_023178	66233.0	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	24.03	21.2	33.3	21.59	24.72	22.51	24.29	26.97	27.48
Merged-chr16-20412153-2	chr16	20411655	20412655	+	740.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176839, intron 2 of 6)	intron (NM_176839, intron 2 of 6)	14239.0	NM_013790	27416.0	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	12.59	15.21	3.7	24.29	14.93	13.66	27.46	34.49	19.36
Merged-chr14-86679055-2	chr14	86678553	86679553	+	740.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 27 of 27)	B4|SINE|B4	433083.0	NR_040457	75155.0	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	10.87	9.22	5.55	8.77	6.06	12.06	3.17	1.77	3.12
Merged-chr18-23914712-2	chr18	23914212	23915212	+	740.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-39976.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	8.01	5.07	5.55	8.77	18.19	22.51	10.56	5.31	9.37
Merged-chr3-108382551-3	chr3	108382045	108383045	+	740.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040560, exon 2 of 3)	non-coding (NR_040560, exon 2 of 3)	1196.0	NR_040560	100038453.0	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	-	predicted gene 12522	ncRNA	90.38	71.42	87.87	83.66	44.78	60.28	88.72	77.82	41.84
Merged-chr7-110014464-3	chr7	110013967	110014967	+	740.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-3784.0	NM_181517	233726.0	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	26.89	7.83	17.57	18.89	4.67	23.31	14.79	12.82	23.73
Merged-chr7-30998249-2	chr7	30997755	30998755	+	740.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR22_Mus|LTR|ERVK	16334.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	6.29	8.29	5.55	11.47	3.73	1.61	14.79	4.86	11.24
Merged-chr16-44190285-3	chr16	44189761	44190761	+	740.538879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029889, intron 1 of 7)	MLT1B|LTR|ERVL-MaLR	16864.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	44.62	54.37	34.22	41.16	42.92	47.42	53.87	58.37	42.47
Merged-chr4-6513118-3	chr4	6512601	6513601	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58830.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	5.15	1.84	3.7	1.35	2.8	0.0	1.06	1.33	5.0
Merged-chr5-96161118-2	chr5	96160626	96161626	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144910, intron 1 of 11)	CpG	421.0	NM_001285511	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	195.07	164.04	169.27	193.64	194.53	184.87	177.44	133.09	86.81
Merged-chr6-119417561-2	chr6	119417055	119418055	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_197985)	promoter-TSS (NM_197985)	-27.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	5.15	2.3	2.77	10.12	5.6	2.41	1.06	2.21	1.25
Merged-chr19-44397921-1	chr19	44397421	44398421	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009127, exon 6 of 6)	exon (NM_009127, exon 6 of 6)	9788.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	19.45	33.18	26.82	49.93	24.72	39.39	48.58	31.84	16.24
Merged-chr15-51955214-2	chr15	51954716	51955716	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36544.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	8.58	17.51	19.42	17.54	27.52	7.23	40.14	27.41	14.99
Merged-chr2-166967108-2	chr2	166966608	166967608	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-2391.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	32.61	24.42	37.92	32.39	19.13	19.29	33.8	29.63	18.74
Merged-chr2-128126705-2	chr2	128126138	128127138	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001284410)	promoter-TSS (NM_001284410)	600.0	NM_009754	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	165.9	150.22	135.04	140.34	138.55	199.34	158.43	157.85	148.01
Merged-chr19-25000350-1	chr19	24999850	25000850	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	821.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	57.78	92.16	85.1	75.57	95.63	98.87	108.79	115.41	87.43
Merged-chr12-80109954-2	chr12	80109403	80110403	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007564, exon 2 of 2)	exon (NM_007564, exon 2 of 2)	3110.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	25.74	5.53	13.87	35.09	7.0	21.7	16.9	8.4	13.12
Merged-chr5-99243379-2	chr5	99242808	99243808	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	9619.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	86.95	78.33	71.22	80.29	74.17	90.83	83.44	99.05	76.19
Merged-chr11-63920709-2	chr11	63920233	63921233	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	CpG	1551.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	8.01	5.99	9.25	2.7	3.27	3.22	10.56	19.01	2.5
Merged-chr18-38410041-3	chr18	38409527	38410527	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	-8880.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	20.59	16.59	1.85	20.92	21.93	24.92	17.96	16.36	14.36
Merged-chr2-84541648-3	chr2	84541157	84542157	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34784.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	8.01	1.38	1.85	4.72	3.27	1.61	4.22	3.1	1.25
Merged-chr3-59260334-2	chr3	59259835	59260835	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 31 of 43)	intron (NM_177855, intron 31 of 43)	2650.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	37.76	40.55	24.97	22.27	19.13	13.66	31.69	30.07	38.1
Merged-chr8-125783607-1	chr8	125783107	125784107	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	49404.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	7.44	1.84	8.32	3.37	2.8	3.22	8.45	2.65	3.75
Merged-chr9-37517665-1	chr9	37517165	37518165	+	740.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146222, intron 2 of 3)	intron (NM_146222, intron 2 of 3)	-10424.0	NR_136939	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	6.29	5.07	12.02	9.45	7.46	2.41	7.39	1.77	1.25
Merged-chr12-85588777-2	chr12	85588283	85589283	+	740.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10322.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	18.88	13.36	5.55	15.52	9.8	18.49	14.79	7.96	11.87
Merged-chrX-23723726-3	chrX	23723219	23724219	+	740.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	Lx8b|LINE|L1	30668.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	8.01	9.22	6.47	12.82	7.0	2.41	5.28	3.54	2.5
Merged-chr5-88631721-3	chr5	88631214	88632214	+	740.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359208, intron 9 of 13)	intron (NM_001359208, intron 9 of 13)	43866.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	142.44	182.47	86.02	146.41	188.47	130.21	123.57	141.05	78.69
Merged-chr12-70911162-3	chr12	70910639	70911639	+	740.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-26718.0	NM_019785	56444.0	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	18.88	13.36	6.47	14.84	8.86	8.04	10.56	11.94	16.24
Merged-chr4-134616429-3	chr4	134615931	134616931	+	740.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-48580.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	6.29	5.53	0.0	6.75	2.8	3.22	7.39	1.77	6.25
Merged-chr4-129190680-3	chr4	129190188	129191188	+	740.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347203)	promoter-TSS (NM_001347203)	893.0	NM_134151	107271.0	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	60.64	55.75	49.02	70.17	65.78	35.37	52.81	82.69	32.48
Merged-chr5-139377663-3	chr5	139377151	139378151	+	740.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033147)	promoter-TSS (NR_033147)	-46.0	NM_001362206	80290.0	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|D830046C22Rik|PGR8	G protein-coupled receptor 146	protein-coding	87.52	58.98	60.12	109.98	72.78	89.22	96.11	83.57	41.84
Merged-chr1-93485489-3	chr1	93484995	93485995	+	740.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159719, intron 1 of 12)	intron (NM_001159719, intron 1 of 12)	6434.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	56.06	47.92	38.85	28.34	23.33	21.7	81.33	114.08	48.71
Merged-chr1-166730398-2	chr1	166729909	166730909	+	740.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4B|LINE|L1	-48564.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	4.58	3.23	3.7	5.4	0.0	2.41	5.28	5.31	5.62
Merged-chr2-51284869-3	chr2	51284395	51285395	+	740.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	43064.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	5.72	3.23	0.0	5.4	4.67	3.22	3.17	4.86	1.25
Merged-chr19-36083078-3	chr19	36082578	36083578	+	740.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019428)	promoter-TSS (NM_019428)	-638.0	NM_019428	54364.0	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	8.58	11.52	14.8	8.1	10.26	14.47	11.62	12.82	6.87
Merged-chr19-23116437-2	chr19	23115940	23116940	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24786.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	8.01	2.76	0.0	6.75	4.2	13.66	9.51	3.54	13.74
Merged-chr11-4660023-2	chr11	4659542	4660542	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029291, intron 8 of 19)	intron (NM_029291, intron 8 of 19)	22249.0	NM_029291	75452.0	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	13.73	18.43	7.4	10.12	15.86	15.27	15.84	19.01	11.24
Merged-chr4-45532478-2	chr4	45531996	45532996	+	740.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1668.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	9.15	9.68	10.17	14.17	7.0	16.88	5.28	7.96	11.24
Merged-chr19-59021008-3	chr19	59020479	59021479	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 9 of 16)	intron (NM_001114312, intron 9 of 16)	55090.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	16.59	22.12	14.8	13.49	7.46	25.72	11.62	9.29	14.36
Merged-chr8-94739982-1	chr8	94739482	94740482	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5702.0	NM_009137	20299.0	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	8.58	1.38	5.55	2.02	0.93	0.0	2.11	4.42	5.0
Merged-chr16-24569891-3	chr16	24569374	24570374	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	40560.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	20.02	17.51	16.65	27.66	22.86	9.65	13.73	8.4	6.87
Merged-chr7-127614706-3	chr7	127614171	127615171	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177226)	promoter-TSS (NM_177226)	196.0	NR_155452	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	28.03	20.74	36.07	48.58	21.93	45.01	42.25	12.82	20.61
Merged-chr9-119936687-1	chr9	119936187	119937187	+	740.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028735)	promoter-TSS (NM_028735)	871.0	NM_028976	74498.0	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	23.45	16.59	42.55	26.31	28.46	32.15	28.52	19.9	18.74
Merged-chr15-66825586-1	chr15	66825086	66826086	+	740.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	6243.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	20.59	11.52	25.9	23.62	14.0	32.96	22.18	32.72	19.98
Merged-chr7-105642547-3	chr7	105642048	105643048	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360053)	TTS (NM_001360053)	2103.0	NM_001360054	14356.0	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	13.16	15.67	25.9	11.47	12.13	28.13	8.45	14.15	13.74
Merged-chr8-94782857-3	chr8	94782362	94783362	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009142)	TTS (NM_009142)	10682.0	NM_009142	20312.0	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	5.15	6.45	5.55	7.42	2.8	3.22	23.24	12.82	11.87
Merged-chr9-45254581-3	chr9	45254090	45255090	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_136903, exon 6 of 6)	non-coding (NR_136903, exon 6 of 6)	12117.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	54.35	80.64	74.0	97.83	72.78	118.16	67.6	78.71	57.46
Merged-chr8-61894219-3	chr8	61893727	61894727	+	740.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 1 of 21)	intron (NM_001293772, intron 1 of 21)	8463.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	4.0	5.53	5.55	3.37	0.47	6.43	1.06	4.42	1.87
Merged-chr8-126936184-1	chr8	126935684	126936684	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024214, intron 4 of 4)	B2_Mm2|SINE|B2	9737.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	8.01	5.99	0.0	7.42	5.6	9.65	12.67	11.94	5.0
Merged-chr8-126887454-1	chr8	126886954	126887954	+	740.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	38434.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	2.29	2.3	0.0	5.4	3.73	1.61	8.45	6.63	5.0
Merged-chr10-22297454-2	chr10	22296963	22297963	+	740.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-9257.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	27.46	47.0	37.92	45.88	41.05	41.8	33.8	17.24	13.12
Merged-chr17-79355743-3	chr17	79355232	79356232	+	740.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026514)	promoter-TSS (NM_026514)	-641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.57	1.38	5.55	5.4	4.2	0.0	9.51	8.84	1.25
Merged-chr2-126500726-2	chr2	126500217	126501217	+	740.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359975)	promoter-TSS (NM_001359975)	-870.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	16.02	15.21	6.47	14.17	13.06	9.65	9.51	6.63	6.25
Merged-chr11-113100875-2	chr11	113100407	113101407	+	740.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	100931.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.72	0.92	5.55	16.19	15.39	12.06	38.02	48.64	24.36
Merged-chr4-66816715-3	chr4	66816185	66817185	+	740.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-10866.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	33.18	37.32	49.95	29.01	28.92	38.58	27.46	27.86	29.35
Merged-chr13-89904784-2	chr13	89904304	89905304	+	740.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	intron (NM_028012, intron 7 of 7)	-162292.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	10.87	7.83	4.62	3.37	5.13	4.82	3.17	3.1	5.0
Merged-chr7-16294472-1	chr7	16293972	16294972	+	740.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7677.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	9.72	10.14	6.47	19.57	10.26	4.02	15.84	11.05	5.62
Merged-chr10-40095545-3	chr10	40095052	40096052	+	740.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	46702.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	52.06	57.6	31.45	90.41	76.04	61.89	78.16	66.33	34.35
Merged-chr4-155197866-3	chr4	155197366	155198366	+	740.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	24669.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	24.6	5.99	11.1	26.99	18.19	16.88	19.01	7.07	9.99
Merged-chr12-3892027-3	chr12	3891550	3892550	+	740.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153743, intron 1 of 17)	intron (NM_153743, intron 1 of 17)	306.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	102.97	131.78	148.92	168.0	140.42	184.87	142.59	153.43	99.92
Merged-chr1-154041076-2	chr1	154040574	154041574	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	141145.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	22.31	18.89	21.27	14.17	10.26	24.11	15.84	11.94	13.74
Merged-chr1-34831338-2	chr1	34830840	34831840	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 2 of 6)	intron (NM_001160236, intron 2 of 6)	11710.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	15.45	17.97	17.57	35.09	20.53	39.39	41.19	22.99	31.85
Merged-chr17-56274678-2	chr17	56274089	56275089	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	2178.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	18.31	15.67	11.1	14.84	6.53	17.68	23.24	24.32	7.49
Merged-chr2-45034183-2	chr2	45033675	45034675	+	740.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-10998.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	18.88	18.43	13.87	35.76	17.26	22.51	36.97	29.18	23.11
Merged-chr11-82078233-3	chr11	82077720	82078720	+	740.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20388.0	NM_011330	20292.0	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	13.16	9.22	12.95	13.49	4.67	3.22	7.39	7.07	12.49
Merged-chr14-45155791-2	chr14	45155329	45156329	+	740.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 14 of 20)	MT2A|LTR|ERVL	63596.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	7.44	8.29	9.25	8.1	7.46	8.04	3.17	5.31	8.74
Merged-chr1-152288120-3	chr1	152287620	152288620	+	740.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	98562.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	5.15	6.91	7.4	8.1	0.93	3.22	2.11	4.86	6.25
Merged-chr2-117169262-2	chr2	117168760	117169760	+	740.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 4 of 4)	intron (NM_001277256, intron 4 of 4)	-15867.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	13.16	8.75	11.1	18.22	11.66	2.41	10.56	6.19	9.99
Merged-chr8-122682683-2	chr8	122682192	122683192	+	740.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	-4517.0	NM_177289	12398.0	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	8.58	5.07	5.55	0.67	2.33	1.61	7.39	1.33	5.62
Merged-chr18-78161547-2	chr18	78161042	78162042	+	740.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207651, intron 13 of 21)	intron (NM_207651, intron 13 of 21)	17630.0	NM_001110273	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	2.86	3.23	3.7	2.7	2.8	3.22	4.22	0.88	0.0
Merged-chr2-159992458-3	chr2	159991979	159992979	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24174.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	17.73	13.36	5.55	24.96	20.06	11.25	22.18	18.57	14.36
Merged-chr12-35833057-1	chr12	35832557	35833557	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-92564.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	84.09	117.04	51.8	95.14	95.17	86.01	25.35	32.28	20.61
Merged-chr5-64537399-1	chr5	64536899	64537899	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60391.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	5.72	3.69	9.25	14.17	9.33	12.86	9.51	8.4	8.12
Merged-chr7-143008754-1	chr7	143008254	143009254	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	3095.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	21.74	21.66	20.35	43.18	38.25	47.42	19.01	17.69	13.74
Merged-chr16-55152595-1	chr16	55152095	55153095	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	130642.0	NM_178720	239852.0	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	2.86	5.07	3.7	4.72	7.93	3.22	2.11	4.42	1.87
Merged-chr5-139687839-1	chr5	139687339	139688339	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48494.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	2.86	1.84	1.85	1.35	0.93	3.22	1.06	0.0	1.25
Merged-chr4-134607911-1	chr4	134607411	134608411	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	-40060.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	4.58	5.07	0.0	5.4	2.33	3.22	4.22	1.77	0.0
Merged-chr15-99421765-1	chr15	99421265	99422265	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001001884)	TTS (NM_001001884)	28546.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	16.59	7.83	12.95	22.94	13.06	18.49	24.29	19.46	12.49
Merged-chr1-36131854-1	chr1	36131354	36132354	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12459.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	21.74	17.05	11.1	138.32	152.55	141.47	149.98	148.57	92.43
Merged-chr19-11816915-1	chr19	11816415	11817415	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	2488.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	38.9	36.4	27.75	31.71	39.65	37.78	17.96	17.69	19.36
Merged-chr17-17549131-2	chr17	17548626	17549626	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172827, intron 11 of 17)	intron (NM_172827, intron 11 of 17)	75363.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	10.3	9.22	5.55	6.75	7.46	8.84	12.67	13.71	7.49
Merged-chr8-4201517-1	chr8	4201017	4202017	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346730, intron 11 of 19)	intron (NM_001346730, intron 11 of 19)	15795.0	NM_207203	73072.0	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	2.86	2.3	0.0	4.72	0.93	4.82	1.06	1.33	2.5
Merged-chrX-159080711-1	chrX	159080211	159081211	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-175071.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.0	1.84	0.0	1.35	4.2	0.0	4.22	2.21	4.37
Merged-chr3-117328932-1	chr3	117328432	117329432	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177664, intron 3 of 6)	intron (NM_177664, intron 3 of 6)	31944.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	11.44	7.83	5.55	6.75	5.13	3.22	4.22	2.21	1.87
Merged-chr4-63385511-1	chr4	63385011	63386011	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045514, intron 6 of 21)	intron (NM_001045514, intron 6 of 21)	12729.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	20.02	23.96	18.5	23.62	27.06	36.17	43.3	22.11	16.24
Merged-chr19-55561989-1	chr19	55561489	55562489	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	140215.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	17.73	14.75	18.5	15.52	17.26	9.65	2.11	7.07	7.49
Merged-chr15-51733735-1	chr15	51733235	51734235	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	131726.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	38.33	42.85	45.32	14.17	19.13	20.09	21.12	20.34	16.24
Merged-chr5-125059622-1	chr5	125059122	125060122	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 17 of 46)	intron (NM_011424, intron 17 of 46)	56147.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	9.72	6.91	16.65	12.82	5.6	8.84	8.45	2.65	5.0
Merged-chr7-16219654-1	chr7	16219154	16220154	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285931, intron 1 of 16)	intron (NM_001285931, intron 1 of 16)	2339.0	NM_001285931	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	5.72	8.29	3.7	7.42	7.93	9.65	3.17	5.31	4.37
Merged-chr11-69996399-2	chr11	69995893	69996893	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291126)	promoter-TSS (NM_001291126)	-548.0	NM_001291126	78246.0	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	162.46	145.61	199.79	104.58	60.65	131.82	196.45	172.89	168.62
Merged-chr13-10539396-1	chr13	10538896	10539896	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178593.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	2.86	2.76	0.0	2.02	4.67	4.82	3.17	2.21	6.25
Merged-chr6-146725387-1	chr6	146724887	146725887	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346666, intron 1 of 11)	CpG	457.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	26.31	13.36	7.4	59.38	13.53	25.72	62.31	21.22	24.36
Merged-chr9-40798417-1	chr9	40797917	40798917	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2856.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	17.73	26.73	26.82	16.19	15.39	17.68	25.35	26.09	30.6
Merged-chr19-41338036-2	chr19	41337586	41338586	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	46984.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	130.43	116.12	141.52	174.75	127.82	138.25	106.67	133.53	79.94
Merged-chr7-143057397-1	chr7	143056897	143057897	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133655, intron 1 of 7)	intron (NM_133655, intron 1 of 7)	-3711.0	NR_110354	97423.0	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	37.18	42.39	49.02	22.94	22.39	33.76	35.91	27.86	38.1
Merged-chr4-102579960-1	chr4	102579460	102580460	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-7598.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	26.89	36.4	29.6	12.14	27.52	16.88	30.63	17.69	20.61
Merged-chr13-119596928-3	chr13	119596409	119597409	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-26910.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	6.29	1.84	7.4	6.07	3.27	13.66	7.39	4.42	16.24
Merged-chr13-85241076-1	chr13	85240576	85241576	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145452, intron 8 of 24)	intron (NM_145452, intron 8 of 24)	48410.0	NM_145452	218397.0	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	5.72	8.75	11.1	2.7	5.6	5.63	5.28	3.1	1.25
Merged-chr1-93479616-1	chr1	93479116	93480116	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_133808)	promoter-TSS (NM_133808)	555.0	NM_001159719	18000.0	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	399.29	436.82	321.88	327.91	279.91	328.75	370.72	382.92	242.94
Merged-chr14-111674817-1	chr14	111674317	111675317	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198865)	promoter-TSS (NM_198865)	-298.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	2.86	0.46	1.85	4.72	4.2	3.22	1.06	0.44	2.5
Merged-chr11-97657384-1	chr11	97656884	97657884	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6028.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	28.6	17.51	22.2	14.17	3.27	12.06	25.35	24.32	21.86
Merged-chr12-54658953-3	chr12	54658456	54659456	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2384.0	NM_134054	104725.0	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	6.29	5.53	5.55	9.45	2.33	5.63	4.22	2.65	4.37
Merged-chr17-47646880-2	chr17	47646393	47647393	+	740.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 1 of 6)	B3|SINE|B2	16203.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	2.29	2.3	0.0	6.07	1.4	1.61	4.22	0.0	1.25
Merged-chr3-8767062-1	chr3	8766562	8767562	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-100024.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	11.44	8.75	1.85	24.96	20.99	12.06	12.67	5.31	2.5
Merged-chr11-119909666-1	chr11	119909166	119910166	+	740.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 2)	LTR41B|LTR|ERVL	-4144.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	8.01	1.38	1.85	6.07	2.33	3.22	4.22	0.0	2.5
Merged-chr3-19904869-1	chr3	19904369	19905369	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9998.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	2.86	1.38	3.7	4.72	0.93	0.0	2.11	1.77	0.0
Merged-chr6-113751910-1	chr6	113751410	113752410	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001036684, intron 19 of 19)	intron (NM_001036684, intron 19 of 19)	-11229.0	NM_024206	110379.0	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	87.52	87.55	95.27	116.73	74.17	118.16	126.74	119.83	78.07
Merged-chr8-24559385-1	chr8	24558885	24559885	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145949, intron 1 of 9)	intron (NM_145949, intron 1 of 9)	16948.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	1.72	2.76	1.85	1.35	4.67	1.61	3.17	5.75	2.5
Merged-chr5-30148591-2	chr5	30148080	30149080	+	740.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178878, intron 1 of 19)	ID4_|SINE|ID	6400.0	NM_178878	97212.0	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	10.3	18.43	21.27	16.19	13.06	31.35	24.29	26.97	19.36
Merged-chr6-30210988-3	chr6	30210500	30211500	+	739.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001169577)	TTS (NM_001169577)	32803.0	NM_001169577	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	7.44	1.38	1.85	2.02	3.73	3.22	3.17	3.98	6.25
Merged-chr1-43814434-4	chr1	43813917	43814917	+	739.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	13291.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	41.19	65.89	49.95	55.33	47.58	63.5	76.05	55.71	59.33
Merged-chr13-73718468-3	chr13	73717974	73718974	+	739.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17694.0	NM_028878	74338.0	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	4.0	3.23	0.0	5.4	2.8	0.0	2.11	2.21	5.0
Merged-chr18-53236306-2	chr18	53235802	53236802	+	739.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-9360.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.29	5.07	7.4	8.77	6.06	3.22	5.28	1.77	9.99
Merged-chr11-100721394-2	chr11	100720881	100721881	+	739.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7531.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	38.9	35.48	50.87	33.06	21.93	39.39	36.97	25.2	36.22
Merged-chr4-107876174-3	chr4	107875665	107876665	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033496, exon 21 of 21)	non-coding (NR_033496, exon 21 of 21)	-3590.0	NM_001282737	17149.0	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	4.58	6.45	0.0	8.77	3.27	3.22	5.28	3.54	3.75
Merged-chr5-32747834-3	chr5	32747330	32748330	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	LFSINE_Vert|SINE|tRNA	-1488.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	72.08	75.57	56.42	64.77	54.11	78.77	55.98	59.25	41.84
Merged-chr10-19594653-3	chr10	19594042	19595042	+	739.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	2593.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	70.93	68.2	52.72	37.78	45.25	47.42	63.37	61.46	48.71
Merged-chr14-121437282-2	chr14	121436785	121437785	+	739.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58055.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.86	4.61	5.55	4.05	0.47	3.22	2.11	2.21	3.75
Merged-chr10-111134781-2	chr10	111134291	111135291	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-30011.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	4.58	6.45	12.02	2.7	4.2	4.82	2.11	3.98	1.87
Merged-chr5-25662902-2	chr5	25662407	25663407	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	42890.0	NM_020570	57434.0	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	61.21	45.62	27.75	62.75	65.78	64.3	39.08	31.39	29.98
Merged-chr5-127624638-2	chr5	127624144	127625144	+	739.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7252.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	9.15	5.07	7.4	6.07	6.53	8.04	8.45	0.44	1.25
Merged-chr2-160047880-2	chr2	160047373	160048373	+	739.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	31220.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	57.78	36.4	23.12	56.0	23.79	54.66	33.8	30.95	31.85
Merged-chr7-126097685-3	chr7	126097170	126098170	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15259.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	14.3	6.91	5.55	26.99	8.4	8.04	8.45	3.98	6.87
Merged-chr9-70851991-3	chr9	70851467	70852467	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	82841.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	17.16	11.06	7.4	18.22	18.66	15.27	8.45	13.71	3.75
Merged-chr3-122419970-3	chr3	122419469	122420469	+	739.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013867, exon 1 of 12)	5' UTR (NM_013867, exon 1 of 12)	212.0	NM_013867	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	7.44	4.15	3.7	5.4	7.0	3.22	9.51	3.1	3.75
Merged-chr2-23015062-1	chr2	23014562	23015562	+	739.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077190, intron 1 of 10)	RMER17B|LTR|ERVK	25179.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	89.24	70.96	59.2	76.24	43.39	66.71	168.99	149.45	65.58
Merged-chr16-38348498-3	chr16	38347995	38348995	+	739.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017429, intron 1 of 2)	intron (NM_001017429, intron 1 of 2)	1496.0	NM_001017429	12856.0	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	9.72	14.28	3.7	10.12	7.46	16.08	15.84	16.36	8.74
Merged-chr16-3241047-3	chr16	3240365	3241365	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-351533.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	4.58	5.07	9.25	3.37	7.46	5.63	6.34	2.21	9.37
Merged-chr11-100555760-3	chr11	100555277	100556277	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028918, intron 7 of 11)	ORR1E|LTR|ERVL-MaLR	10145.0	NM_028918	74407.0	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	14.3	5.99	1.85	5.4	4.2	1.61	9.51	7.52	3.75
Merged-chrX-73691328-3	chrX	73690883	73691883	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313698, intron 4 of 7)	intron (NM_001313698, intron 4 of 7)	18250.0	NM_001142809	102857.0	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	5.15	7.83	3.7	2.7	5.13	1.61	3.17	1.77	1.25
Merged-chr7-143154057-3	chr7	143153566	143154566	+	739.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008434, intron 2 of 15)	intron (NM_008434, intron 2 of 15)	46812.0	NM_008434	16535.0	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	2.86	1.38	0.0	5.4	2.33	2.41	1.06	3.1	2.5
Merged-chr7-97174355-3	chr7	97173862	97174862	+	739.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	L1MA4A|LINE|L1	92611.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	13.16	8.29	4.62	15.52	7.46	6.43	10.56	7.52	14.99
Merged-chr16-16524526-1	chr16	16524026	16525026	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2885.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	72.65	87.55	49.02	90.41	61.11	62.7	59.15	61.02	47.46
Merged-chr2-35162076-2	chr2	35161574	35162574	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_012018, exon 30 of 44)	exon (NM_012018, exon 30 of 44)	29840.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	34.9	43.77	47.17	64.1	33.59	29.74	39.08	39.8	24.98
Merged-chr3-121184702-2	chr3	121184180	121185180	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12985.0	NM_025637	66568.0	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	4.58	5.53	1.85	4.72	3.73	4.02	3.17	6.19	5.0
Merged-chr3-38237828-1	chr3	38237328	38238328	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29709.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.29	0.92	0.0	2.02	1.87	4.82	5.28	3.1	5.62
Merged-chr13-73822388-3	chr13	73821892	73822892	+	739.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347535, intron 8 of 8)	intron (NM_001347535, intron 8 of 8)	25239.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	5.15	3.69	5.55	7.42	0.0	4.82	4.22	1.33	5.0
Merged-chr2-167926869-2	chr2	167926416	167927416	+	739.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5411.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	89.81	86.63	83.25	72.87	64.84	121.37	94.0	80.92	68.7
Merged-chr3-116837269-2	chr3	116836770	116837770	+	739.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-22297.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	12.59	3.69	5.55	4.72	6.06	6.43	11.62	3.98	14.99
Merged-chr9-35163396-3	chr9	35162890	35163890	+	739.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	12597.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	40.62	42.39	50.87	24.96	29.39	28.13	68.65	52.62	36.22
Merged-chr16-26035203-1	chr16	26034703	26035703	+	739.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	70581.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	27.46	31.79	27.75	20.92	34.99	34.56	23.24	34.49	23.11
Merged-chr11-8676836-1	chr11	8676336	8677336	+	739.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-12301.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.86	4.15	2.77	4.72	5.6	3.22	8.45	1.77	6.25
Merged-chr19-37146359-3	chr19	37145817	37146817	+	739.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 2 of 10)	B1F1|SINE|Alu	-27526.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	42.33	34.1	50.87	47.23	30.79	32.15	73.93	67.65	36.85
Merged-chr10-108155874-2	chr10	108155383	108156383	+	739.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6517.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	1.72	2.3	1.85	2.7	3.27	1.61	6.34	1.33	1.25
Merged-chr15-15102373-2	chr15	15101879	15102879	+	739.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1675722.0	NM_009869	12565.0	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	2.29	1.84	6.47	2.02	3.73	4.82	4.22	4.86	5.0
Merged-chr2-160288069-2	chr2	160287583	160288583	+	739.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39411.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	17.73	12.44	5.55	16.87	12.6	15.27	16.9	11.94	9.99
Merged-chr11-76780304-3	chr11	76779804	76780804	+	739.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-16726.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	120.13	96.3	58.27	118.08	101.7	80.38	140.47	175.98	73.69
Merged-chr6-127246020-3	chr6	127245504	127246504	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61963.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	19.45	10.6	12.95	10.8	3.73	6.43	35.91	16.36	5.0
Merged-chr4-19867792-3	chr4	19867294	19868294	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49067.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	17.73	18.43	12.95	16.19	16.33	4.82	13.73	15.92	14.99
Merged-chr17-12030964-3	chr17	12030467	12031467	+	739.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-88317.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	13.73	6.45	0.0	5.4	0.47	4.02	1.06	1.33	3.75
Merged-chr13-100436872-1	chr13	100436372	100437372	+	739.599976	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008670, intron 5 of 15)	intron (NM_008670, intron 5 of 15)	15992.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	6.29	9.22	14.8	6.07	3.73	8.04	16.9	14.59	18.74
Merged-chr9-32709948-2	chr9	32709459	32710459	+	739.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038642, intron 1 of 6)	intron (NM_001038642, intron 1 of 6)	13917.0	NM_001038642	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	6.29	6.91	3.7	16.87	5.6	8.04	3.17	3.98	13.74
Merged-chr11-69428945-2	chr11	69428446	69429446	+	739.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 77 of 85)	intron (NM_001081330, intron 77 of 85)	-15271.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	37.18	23.5	26.82	50.6	27.06	65.91	36.97	53.5	56.21
Merged-chr6-4601567-1	chr6	4601067	4602067	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145398, intron 1 of 17)	intron (NM_145398, intron 1 of 17)	501.0	NM_145398	213819.0	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	40.04	49.76	44.4	37.78	49.45	45.01	62.31	29.63	9.99
Merged-chr6-32507008-1	chr6	32506508	32507508	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 2 of 31)	intron (NM_175750, intron 2 of 31)	-4133.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	20.59	13.82	12.95	8.77	7.46	13.66	5.28	10.17	2.5
Merged-chr7-83742921-1	chr7	83742421	83743421	+	739.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7382.0	NM_010551	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	9.72	8.75	18.5	9.45	6.53	8.04	36.97	31.84	26.85
Merged-chr6-94583109-2	chr6	94582617	94583617	+	739.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	23298.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	7.44	2.76	1.85	8.77	9.33	1.61	6.34	0.0	1.87
Merged-chr1-131973176-1	chr1	131972676	131973676	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	2567.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	108.12	92.16	74.0	89.74	71.38	104.49	104.56	97.72	84.31
Merged-chr10-118095189-2	chr10	118094674	118095674	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46613.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	75.51	67.27	42.55	118.08	64.38	127.8	65.48	64.56	61.2
Merged-chr4-47278575-2	chr4	47278067	47279067	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	70555.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	8.01	3.69	1.85	0.67	2.33	0.0	3.17	2.21	1.87
Merged-chr6-92269196-2	chr6	92268712	92269712	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24562.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.29	0.92	0.92	1.35	2.8	1.61	2.11	1.33	1.25
Merged-chr17-34346676-2	chr17	34346164	34347164	+	739.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2019.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	263.72	215.65	294.14	49.93	40.12	13.66	19.01	11.94	3.75
Merged-chr10-94473596-1	chr10	94473096	94474096	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-41261.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	109.26	113.81	80.47	151.14	129.22	130.21	80.27	139.72	86.18
Merged-chr7-100178612-1	chr7	100178112	100179112	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190950)	promoter-TSS (NM_001190950)	-71.0	NM_001360467	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	1.14	2.76	3.7	4.72	5.6	1.61	6.34	1.77	3.12
Merged-chr6-94582238-1	chr6	94581738	94582738	+	739.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	24177.0	NR_106008	102466992.0		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	6.29	11.52	7.4	12.82	11.2	6.43	6.34	1.77	3.75
Merged-chrX-95166515-3	chrX	95165997	95166997	+	739.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290385)	promoter-TSS (NM_001290385)	42.0	NM_001290385	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	9.72	6.45	0.0	29.69	19.59	39.39	6.34	3.98	4.37
Merged-chr11-34220830-3	chr11	34220356	34221356	+	739.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-12767.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	89.81	110.13	75.85	48.58	60.18	47.42	89.78	54.39	46.22
Merged-chr1-171248948-3	chr1	171248393	171249393	+	739.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	20.59	8.29	14.8	16.87	5.13	20.09	10.56	9.29	12.49
Merged-chr5-135537951-2	chr5	135537466	135538466	+	739.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTEa|LTR|ERVL-MaLR	7156.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.0	4.15	3.7	22.27	10.26	22.51	11.62	6.19	2.5
Merged-chr4-43039096-2	chr4	43038615	43039615	+	739.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	intron (NR_045567, intron 1 of 7)	1186.0	NM_001253353	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	36.04	41.47	22.2	46.56	28.46	29.74	49.64	53.5	33.72
Merged-chr5-74951492-2	chr5	74950999	74951999	+	739.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 1 of 4)	intron (NR_045866, intron 1 of 4)	2305.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	14.87	13.82	13.87	15.52	8.4	16.08	7.39	7.07	12.49
Merged-chr16-35056968-3	chr16	35056405	35057405	+	739.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023587, intron 3 of 6)	intron (NM_023587, intron 3 of 6)	34484.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	8.01	7.37	0.0	10.8	13.53	4.82	10.56	6.63	11.24
Merged-chr7-145253268-3	chr7	145252767	145253767	+	739.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_132642)	TTS (NR_132642)	30744.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	6.29	2.3	5.55	3.37	2.33	3.22	5.28	1.77	1.25
Merged-chr2-160085469-2	chr2	160084955	160085955	+	739.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68802.0	NR_040499	71613.0	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	73.22	78.79	49.95	79.62	61.11	87.61	42.25	36.7	40.59
Merged-chr10-9897169-3	chr10	9896632	9897632	+	739.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	3908.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	16.59	19.81	24.05	23.62	14.46	25.72	19.01	24.32	17.49
Merged-chr14-20785474-2	chr14	20784987	20785987	+	739.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039139, intron 2 of 18)	intron (NM_001039139, intron 2 of 18)	8601.0	NM_001039138	12325.0	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	6.86	7.37	7.4	11.47	3.73	9.65	7.39	3.98	3.75
Merged-chr1-60977870-3	chr1	60977368	60978368	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017480)	promoter-TSS (NM_017480)	-46.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	40.04	41.93	29.6	36.43	23.33	24.11	47.53	42.01	32.48
Merged-chr19-4136129-3	chr19	4135633	4136633	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144532, exon 5 of 6)	exon (NM_144532, exon 5 of 6)	3476.0	NM_144532	73660.0	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	18.88	14.28	7.4	10.12	11.2	9.65	10.56	8.4	13.74
Merged-chr8-75096473-3	chr8	75095997	75096997	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 2 of 4)	PB1D10|SINE|Alu	2879.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	24.6	20.74	27.75	29.01	13.53	43.4	17.96	25.65	24.98
Merged-chr13-45093948-1	chr13	45093448	45094448	+	739.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91852.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	1.72	2.76	3.7	0.67	0.93	1.61	23.24	23.43	8.74
Merged-chr7-101364990-3	chr7	101364502	101365502	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 1 of 33)	MIRc|SINE|MIR	-13120.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	27.46	29.49	34.22	35.76	27.06	16.88	26.4	15.92	9.99
Merged-chr15-62385598-3	chr15	62385078	62386078	+	739.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-166127.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	18.31	9.68	23.12	14.17	8.86	11.25	8.45	6.63	13.12
Merged-chr16-33833976-3	chr16	33833514	33834514	+	739.3222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	4349.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	45.19	28.57	27.75	50.6	30.79	35.37	47.53	41.12	24.98
Merged-chr17-45610482-3	chr17	45609990	45610990	+	739.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-8388.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	12.59	5.53	9.25	6.75	3.27	3.22	3.17	4.42	2.5
Merged-chr2-117439289-3	chr2	117438781	117439781	+	739.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96404.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	2.29	2.3	0.92	9.45	3.27	0.0	2.11	0.88	0.0
Merged-chr13-33079661-3	chr13	33079177	33080177	+	739.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4426.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	12.59	9.68	11.1	8.1	4.67	4.82	24.29	13.71	5.0
Merged-chr2-167240604-2	chr2	167240076	167241076	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008968)	promoter-TSS (NM_008968)	-39.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	37.18	32.25	39.77	30.36	26.59	40.19	86.61	47.31	36.85
Merged-chr6-122845098-2	chr6	122844592	122845592	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021899, exon 11 of 11)	3' UTR (NM_021899, exon 11 of 11)	11065.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	10.87	10.6	7.4	10.8	7.46	16.88	5.28	7.52	13.74
Merged-chr10-18927548-2	chr10	18927056	18928056	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	82485.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	13.16	4.61	1.85	12.14	6.06	2.41	8.45	9.73	1.25
Merged-chr8-94696157-2	chr8	94695685	94696685	+	739.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026385)	promoter-TSS (NM_026385)	57.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	2.86	5.53	14.8	8.77	3.27	3.22	1.06	3.98	2.5
Merged-chr19-47918140-2	chr19	47917640	47918640	+	739.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	1159.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	40.62	35.48	26.82	70.85	31.26	32.15	24.29	20.34	23.73
Merged-chr4-95830539-3	chr4	95830025	95831025	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113412, intron 11 of 15)	intron (NM_001113412, intron 11 of 15)	136510.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	5.72	5.53	3.7	4.05	3.27	4.82	9.51	7.52	4.37
Merged-chr7-100191006-3	chr7	100190524	100191524	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12341.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	8.58	3.23	5.55	10.8	2.8	3.22	6.34	2.21	6.25
Merged-chr6-59022832-3	chr6	59022345	59023345	+	739.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	intron (NM_153574, intron 1 of 17)	1657.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	17.16	14.75	11.1	16.87	11.2	11.25	11.62	11.94	13.12
Merged-chr3-28053288-3	chr3	28052810	28053810	+	739.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 11 of 25)	L1MD2|LINE|L1	69139.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	7.44	8.75	9.25	5.4	1.87	4.82	7.39	6.63	3.12
Merged-chr16-33777418-3	chr16	33776966	33777966	+	739.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-16571.0	NM_010739	17063.0	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	5.72	6.45	3.7	10.8	4.67	1.61	11.62	8.4	4.37
Merged-chr2-30067203-3	chr2	30066767	30067767	+	739.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204875, intron 1 of 7)	CpG	793.0	NM_001204875	56086.0	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	32.04	15.67	53.65	22.94	18.66	36.97	32.74	13.27	33.72
Merged-chr9-40797221-2	chr9	40796721	40797721	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-4052.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	25.74	20.27	5.55	16.19	7.0	31.35	6.34	3.98	20.61
Merged-chr12-17507321-2	chr12	17506813	17507813	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37560.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.57	5.53	4.62	5.4	2.8	1.61	4.22	7.07	1.25
Merged-chr13-110683847-2	chr13	110683358	110684358	+	739.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-219641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	1.72	3.23	0.0	8.77	6.53	1.61	9.51	4.42	1.87
Merged-chr10-127195562-2	chr10	127195079	127196079	+	739.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045715, intron 1 of 3)	CpG	130.0	NM_030714	80904.0	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	36.04	22.58	23.12	67.47	51.78	28.13	9.51	8.84	5.62
Merged-chr1-143985202-2	chr1	143984662	143985662	+	739.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18987.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	52.63	51.61	46.25	56.0	42.92	68.32	71.82	49.08	51.84
Merged-chr16-20621470-4	chr16	20620896	20621896	+	739.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028420)	promoter-TSS (NM_028420)	-118.0	NM_028420	73047.0	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	8.01	5.53	2.77	25.64	14.93	10.45	27.46	17.24	8.74
Merged-chr5-105496793-2	chr5	105496277	105497277	+	739.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-22694.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	53.77	36.86	26.82	66.12	27.99	24.92	11.62	2.65	3.75
Merged-chr18-3008730-2	chr18	3008243	3009243	+	739.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114669.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	9.15	9.68	28.67	5.4	17.73	16.08	2.11	0.88	34.35
Merged-chrX-53006288-3	chrX	53005783	53006783	+	739.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013556, intron 3 of 8)	intron (NM_013556, intron 3 of 8)	18205.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	5.72	6.45	5.55	7.42	1.87	6.43	4.22	2.65	9.99
Merged-chr17-30197085-1	chr17	30196585	30197585	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192046.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	19.45	10.14	5.55	25.64	14.93	13.66	12.67	3.1	11.24
Merged-chrX-142383061-1	chrX	142382561	142383561	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	7474.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	16.02	28.11	27.75	18.22	18.19	17.68	21.12	26.53	23.11
Merged-chr7-53626230-1	chr7	53625730	53626730	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	265659.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	2.29	1.84	0.0	2.02	6.06	3.22	7.39	4.42	0.62
Merged-chr12-101976889-1	chr12	101976389	101977389	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016856, intron 1 of 14)	intron (NM_016856, intron 1 of 14)	915.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	93.24	85.25	69.37	84.34	88.64	90.83	74.99	83.57	54.33
Merged-chr2-163433965-1	chr2	163433465	163434465	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4502.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	5.72	3.69	5.55	4.72	2.8	14.47	4.22	3.1	4.37
Merged-chr13-104863645-1	chr13	104863145	104864145	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029984, exon 1 of 3)	exon (NM_029984, exon 1 of 3)	248.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	1.14	2.3	8.32	3.37	1.87	0.0	1.06	1.33	1.25
Merged-chr10-68127343-2	chr10	68126846	68127846	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 6 of 9)	intron (NM_023598, intron 6 of 9)	147776.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	26.31	26.26	7.4	45.88	36.85	22.51	60.2	41.56	29.98
Merged-chr1-137910452-1	chr1	137909952	137910952	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56003.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	6.29	3.23	8.32	13.49	11.66	13.66	7.39	7.52	18.74
Merged-chr11-102900952-1	chr11	102900452	102901452	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3752.0	NM_010277	14580.0	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	2.29	1.84	1.85	2.7	2.8	1.61	2.11	1.33	6.87
Merged-chr1-152688127-1	chr1	152687627	152688627	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	intron (NM_001346117, intron 1 of 18)	-62424.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	13.73	18.43	19.42	30.36	23.79	32.96	33.8	21.67	18.11
Merged-chr14-103048907-1	chr14	103048407	103049407	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1895.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	9.15	5.53	1.85	6.75	3.73	3.22	13.73	12.38	3.12
Merged-chr7-81859697-3	chr7	81859207	81860207	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111910, intron 1 of 7)	intron (NR_111910, intron 1 of 7)	706.0	NM_145375	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	205.37	244.22	207.19	205.79	190.34	186.48	148.92	154.32	133.65
Merged-chr11-96822817-2	chr11	96822306	96823306	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008686, intron 2 of 4)	intron (NM_008686, intron 2 of 4)	1125.0	NM_001361682	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	17.73	13.36	5.55	7.42	2.8	9.65	5.28	10.17	2.5
Merged-chr8-40608573-1	chr8	40608073	40609073	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040699, intron 2 of 13)	Lx8|LINE|L1	26219.0	NM_001040699	54384.0	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	5.15	2.76	0.0	1.35	3.73	1.61	15.84	7.07	11.24
Merged-chr10-31519637-1	chr10	31519137	31520137	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 2 of 5)	ORR1E|LTR|ERVL-MaLR	-73679.0	NM_001359366	21987.0	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	2.86	2.76	5.55	2.7	3.73	4.82	2.11	1.33	5.0
Merged-chr19-36410245-1	chr19	36409745	36410745	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	CpG	31178.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	69.22	30.41	31.45	65.45	30.79	48.23	52.81	32.72	22.48
Merged-chr3-45240817-1	chr3	45240317	45241317	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137443.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	5.15	4.15	6.47	1.35	1.87	1.61	1.06	3.1	1.25
Merged-chr13-23889796-1	chr13	23889296	23890296	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121611, intron 11 of 12)	intron (NR_121611, intron 11 of 12)	19523.0	NM_001170638	20504.0	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	4.0	4.15	1.85	4.72	6.53	4.82	3.17	3.54	1.25
Merged-chr13-19854235-1	chr13	19853735	19854735	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29978.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	19.45	11.52	4.62	24.96	16.79	7.23	6.34	4.42	2.5
Merged-chr15-62032301-1	chr15	62031801	62032801	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5685.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	14.3	1.84	1.85	4.72	9.8	0.0	5.28	5.31	3.75
Merged-chr17-67381749-1	chr17	67381249	67382249	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-27258.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	7.44	6.45	1.85	10.12	7.0	6.43	4.22	8.84	6.25
Merged-chr4-135495180-1	chr4	135494680	135495680	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028995)	promoter-TSS (NM_028995)	-211.0	NM_001361484	74552.0	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	124.14	121.65	111.92	99.86	75.11	67.52	98.23	135.3	74.32
Merged-chr12-69532742-1	chr12	69532242	69533242	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50286.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	2.86	1.38	3.7	2.02	2.8	3.22	10.56	2.65	7.49
Merged-chr10-8758107-1	chr10	8757607	8758607	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127963.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	76.66	73.73	48.1	68.15	56.91	70.73	72.88	72.07	52.46
Merged-chr9-95689169-1	chr9	95688669	95689669	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	51541.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	9.72	10.6	7.4	8.1	5.13	13.66	13.73	9.73	11.24
Merged-chr6-134366167-1	chr6	134365667	134366667	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-30162.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	13.16	14.75	9.25	18.89	8.4	6.43	3.17	2.65	3.75
Merged-chr8-25109440-1	chr8	25108940	25109940	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_155282, exon 2 of 2)	non-coding (NR_155282, exon 2 of 2)	7261.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	78.37	82.02	59.2	79.62	78.84	55.46	52.81	89.76	64.33
Merged-chr13-80953125-2	chr13	80952648	80953648	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10926.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.44	3.69	1.85	8.77	4.67	6.43	5.28	3.54	6.25
Merged-chrY-90803612-1	chrY	90803112	90804112	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	18170.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	4.58	2.76	0.92	0.67	1.4	0.0	6.34	4.86	28.1
Merged-chr5-102057229-1	chr5	102056729	102057729	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	12692.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	49.2	54.37	51.8	49.25	44.78	65.91	82.38	102.58	64.33
Merged-chr4-141156458-2	chr4	141155951	141156951	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172518, intron 1 of 9)	RSINE1|SINE|B4	8529.0	NM_172518	213499.0	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	46.91	41.01	26.82	35.09	51.32	53.85	38.02	50.85	25.61
Merged-chr4-155519494-2	chr4	155518986	155519986	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160016, intron 2 of 11)	intron (NM_001160016, intron 2 of 11)	28125.0	NM_001160016	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	9.15	22.12	15.72	11.47	11.66	16.88	23.24	26.09	14.99
Merged-chr6-73697270-1	chr6	73696770	73697770	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-226249.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	8.58	4.15	0.0	8.77	6.53	2.41	5.28	2.21	1.25
Merged-chr1-134106949-2	chr1	134106450	134107450	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4292.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	1.72	3.69	1.85	2.7	0.93	0.0	1.06	0.44	1.25
Merged-chr15-67092459-1	chr15	67091959	67092959	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84423.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	6.29	4.15	9.25	10.12	18.19	18.49	6.34	3.98	14.99
Merged-chr1-9991981-1	chr1	9991481	9992481	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145692, intron 5 of 8)	intron (NM_145692, intron 5 of 8)	17155.0	NR_110971	69312.0	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	5.72	0.92	5.55	6.07	5.13	6.43	2.11	0.88	0.0
Merged-chr12-99741813-1	chr12	99741313	99742313	+	739.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030172, intron 5 of 5)	Lx9|LINE|L1	-113839.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	9.15	1.38	13.87	4.72	2.8	8.04	9.51	4.86	6.25
Merged-chr3-87243844-2	chr3	87243338	87244338	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19686.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.29	3.69	0.0	2.02	3.27	1.61	2.11	0.0	2.5
Merged-chr6-148722426-1	chr6	148721926	148722926	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44426.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	2.29	2.3	5.55	1.35	3.27	12.86	3.17	1.77	9.37
Merged-chr10-77522662-2	chr10	77522137	77523137	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6824.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	94.39	81.56	98.97	72.19	63.45	127.0	113.01	117.62	54.96
Merged-chr6-108186277-1	chr6	108185777	108186777	+	739.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145937)	promoter-TSS (NM_145937)	-694.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	9.72	9.22	18.5	15.52	16.79	17.68	22.18	24.32	14.36
Merged-chr9-14174156-1	chr9	14173656	14174656	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102145.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	6.86	3.23	3.7	2.02	1.87	12.86	6.34	4.86	1.87
Merged-chr9-77746564-1	chr9	77746064	77747064	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7971.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.72	5.53	1.85	7.42	4.2	1.61	5.28	0.88	3.12
Merged-chr7-6729621-1	chr7	6729121	6730121	+	739.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290994)	promoter-TSS (NM_001290994)	798.0	NM_008817	18616.0	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	5.72	0.92	5.55	3.37	3.27	1.61	0.0	0.88	5.0
Merged-chr11-116096567-3	chr11	116096057	116097057	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-9562.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	78.37	84.78	44.4	36.43	43.39	64.3	42.25	51.73	62.45
Merged-chr1-105795868-3	chr1	105795370	105796370	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	15147.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	36.04	39.63	39.77	22.27	36.85	36.97	35.91	26.53	47.46
Merged-chr10-60389684-3	chr10	60389175	60390175	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 30 of 68)	intron (NM_001252635, intron 30 of 68)	-10051.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	8.01	10.14	7.4	23.62	14.93	8.84	14.79	10.61	5.62
Merged-chr1-155391691-3	chr1	155391199	155392199	+	738.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	MTEa|LTR|ERVL-MaLR	25745.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.01	5.53	12.95	12.14	6.53	4.02	7.39	6.63	2.5
Merged-chr3-144982858-3	chr3	144982352	144983352	+	738.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-7807.0	NM_207208	99663.0	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	6.86	5.99	3.7	3.37	2.8	14.47	12.67	7.07	15.61
Merged-chr5-53872078-2	chr5	53871553	53872553	+	738.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	62426.0	NM_144517	67249.0	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	7.44	1.84	8.32	4.05	2.8	3.22	6.34	3.1	1.25
Merged-chr4-138447628-3	chr4	138447121	138448121	+	738.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7527.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	4.0	0.92	0.0	8.1	2.33	0.0	3.17	0.0	5.0
Merged-chr9-111571885-2	chr9	111571380	111572380	+	738.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016853, intron 10 of 10)	ORR1E|LTR|ERVL-MaLR	118468.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	7.44	4.15	1.85	2.7	5.13	11.25	5.28	3.54	3.75
Merged-chr2-5710110-2	chr2	5709614	5710614	+	738.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	4648.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	15.45	13.36	12.95	23.62	14.93	24.92	23.24	19.46	16.86
Merged-chr18-38434204-2	chr18	38433707	38434707	+	738.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	RMER6A|LTR|ERVK	15300.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	14.87	17.05	12.95	20.24	9.8	20.9	19.01	22.99	19.36
Merged-chr14-100937619-2	chr14	100937107	100938107	+	738.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	262462.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	1.72	2.76	0.0	4.05	11.66	0.0	2.11	2.65	5.0
Merged-chr11-21241481-3	chr11	21240977	21241977	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	2445.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	48.62	59.44	21.27	30.36	16.79	24.11	87.66	72.07	34.97
Merged-chr8-94167457-3	chr8	94166971	94167971	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1|LTR|ERVL-MaLR	-5147.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	4.0	4.61	0.0	3.37	1.4	4.82	5.28	1.33	2.5
Merged-chr2-37702970-2	chr2	37702469	37703469	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-14685.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	6.86	3.23	5.55	8.77	4.2	6.43	8.45	2.65	5.0
Merged-chr18-24039596-3	chr18	24039096	24040096	+	738.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18783.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	5.15	0.46	0.0	2.02	4.2	1.61	5.28	1.33	3.75
Merged-chr5-92470904-1	chr5	92470404	92471404	+	738.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	B4A|SINE|B4	12347.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	13.16	11.52	40.7	11.47	6.53	35.37	28.52	9.73	28.1
Merged-chr10-62594126-2	chr10	62593597	62594597	+	738.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019553, exon 4 of 15)	exon (NM_019553, exon 4 of 15)	8201.0	NM_019553	56200.0	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	20.02	13.82	22.2	3.37	3.27	8.04	16.9	15.03	5.0
Merged-chr4-46535343-2	chr4	46534850	46535850	+	738.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151695)	promoter-TSS (NR_151695)	-551.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	44.62	57.6	99.89	68.15	50.38	85.2	91.89	91.97	43.72
Merged-chr13-3897074-3	chr13	3896571	3897571	+	738.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-3490.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	3.43	5.53	3.7	2.7	6.06	0.0	3.17	1.33	2.5
Merged-chr1-165780599-3	chr1	165780097	165781097	+	738.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8084.0	NM_001113393	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	10.87	5.99	1.85	6.07	4.67	0.8	13.73	8.84	3.75
Merged-chr12-73967832-2	chr12	73967335	73968335	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	3305.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	57.78	100.45	60.12	66.12	64.84	85.2	91.89	68.09	58.71
Merged-chr9-124023216-2	chr9	124022712	124023712	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	1241.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	149.88	198.14	95.27	200.39	190.8	123.78	21.12	15.48	12.49
Merged-chr1-35839612-2	chr1	35839108	35840108	+	738.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-228792.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	8.01	2.3	3.7	0.67	0.93	1.61	6.34	1.33	1.25
Merged-chr19-29563614-1	chr19	29563114	29564114	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081319, intron 4 of 25)	intron (NM_001081319, intron 4 of 25)	41332.0	NM_001081319	226089.0	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	6.29	4.61	7.4	4.05	4.67	6.43	0.0	3.54	6.25
Merged-chr12-41288771-2	chr12	41288264	41289264	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	197293.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	18.88	26.26	15.72	24.96	17.26	25.72	34.85	39.35	22.48
Merged-chr10-60368073-2	chr10	60367546	60368546	+	738.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159572, intron 5 of 6)	intron (NM_001159572, intron 5 of 6)	21195.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	26.31	25.8	28.67	39.13	18.19	30.54	26.4	32.28	30.6
Merged-chr6-127143344-3	chr6	127142828	127143828	+	738.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6061.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	14.3	3.69	9.25	7.42	1.4	3.22	2.11	1.77	1.25
Merged-chr5-52133003-3	chr5	52132494	52133494	+	738.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3023.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	5.15	4.15	5.55	4.05	2.33	0.0	5.28	2.21	1.25
Merged-chr6-142571435-2	chr6	142570913	142571913	+	738.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	201.0	NM_001330363	16523.0	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	6.86	0.92	0.0	2.7	2.33	1.61	1.06	1.33	2.5
Merged-chr18-46360115-1	chr18	46359615	46360615	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48187.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	10.3	4.61	3.7	6.75	7.0	9.65	7.39	7.52	8.12
Merged-chr10-75744218-3	chr10	75743708	75744708	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172549, intron 10 of 36)	intron (NM_172549, intron 10 of 36)	20149.0	NM_172549	104248.0	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	2.29	1.84	0.92	2.02	3.73	3.22	2.11	1.33	3.75
Merged-chr12-77781536-2	chr12	77781026	77782026	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	371385.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.57	2.3	0.0	1.35	3.27	1.61	6.34	1.77	5.62
Merged-chr10-94518351-1	chr10	94517851	94518851	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	RLTR11A2|LTR|ERVK	3494.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	24.03	11.98	14.8	26.31	17.26	6.43	11.62	13.27	6.25
Merged-chr3-98015993-3	chr3	98015487	98016487	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2449.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	20.59	17.51	9.25	23.62	21.46	40.19	23.24	20.78	16.86
Merged-chr10-118867352-1	chr10	118866852	118867852	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	1551.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	204.22	166.8	118.39	180.15	132.49	117.35	191.17	198.09	114.91
Merged-chr2-6209376-1	chr2	6208876	6209876	+	738.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024208, intron 1 of 4)	intron (NM_024208, intron 1 of 4)	3618.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	2.86	0.92	1.85	5.4	1.4	5.63	1.06	1.77	0.0
Merged-chr13-60054192-1	chr13	60053692	60054692	+	738.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_046142, intron 1 of 2)	intron (NR_046142, intron 1 of 2)	24481.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	44.05	50.69	18.5	2.7	0.0	4.02	5.28	0.44	3.75
Merged-chr11-107595049-2	chr11	107594550	107595550	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 5 of 31)	intron (NM_198298, intron 5 of 31)	-42672.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	13.73	18.43	12.95	9.45	9.33	6.43	32.74	24.76	8.74
Merged-chr7-104369239-2	chr7	104368745	104369745	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-10599.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	56.63	70.04	52.72	56.0	43.85	72.34	61.26	84.45	46.22
Merged-chr2-167696554-2	chr2	167696028	167697028	+	738.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_110334, exon 2 of 2)	non-coding (NR_110334, exon 2 of 2)	5351.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	42.9	21.66	72.15	28.34	20.53	47.42	39.08	52.62	36.85
Merged-chr13-28601927-2	chr13	28601429	28602429	+	738.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	108944.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	24.03	25.8	36.07	41.83	20.06	41.8	25.35	38.47	14.99
Merged-chr11-68966096-3	chr11	68965578	68966578	+	738.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2053.0	NM_028048	71998.0	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	5.15	4.15	0.0	4.72	9.33	8.84	2.11	5.31	1.87
Merged-chr9-48816986-2	chr9	48816491	48817491	+	738.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033324, intron 2 of 6)	MIR3|SINE|MIR	18954.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	28.03	14.75	9.25	36.43	20.99	13.66	35.91	22.55	8.74
Merged-chr16-11177560-3	chr16	11177053	11178053	+	738.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151506)	promoter-TSS (NR_151506)	-623.0	NR_151506	105246071.0	Mm.426799	NR_151506		4930509G22Rik	-	RIKEN cDNA 4930509G22 gene	ncRNA	80.66	60.36	59.2	60.72	41.52	55.46	109.84	94.62	49.96
Merged-chr2-160304187-3	chr2	160303675	160304675	+	738.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	23319.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	9.15	3.69	3.7	9.45	6.53	6.43	5.28	3.98	2.5
Merged-chr11-86956583-2	chr11	86956078	86957078	+	738.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005341, intron 2 of 4)	intron (NM_001005341, intron 2 of 4)	37184.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	44.05	42.39	27.75	65.45	44.32	22.51	49.64	67.65	23.73
Merged-chr1-178330732-2	chr1	178330190	178331190	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016805, exon 11 of 14)	exon (NM_016805, exon 11 of 14)	7125.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	20.59	30.87	24.05	17.54	22.86	36.17	28.52	36.7	28.1
Merged-chr6-120024805-2	chr6	120024301	120025301	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	intron (NM_198703, intron 1 of 27)	9510.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	37.76	66.35	60.12	49.25	36.39	40.19	48.58	63.23	31.23
Merged-chr12-73846812-1	chr12	73846312	73847312	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54512.0	NM_001313920	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	3.43	5.99	4.62	2.7	4.2	0.0	1.06	0.88	5.0
Merged-chr2-119167044-1	chr2	119166544	119167544	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177157)	promoter-TSS (NM_177157)	-744.0	NM_177157	320415.0	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	5.72	4.61	2.77	4.05	7.93	10.45	3.17	5.31	0.0
Merged-chr4-128806201-2	chr4	128805701	128806701	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081098)	promoter-TSS (NM_001081098)	-89.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	42.9	38.25	63.82	72.19	36.39	81.18	101.39	28.74	27.48
Merged-chr2-46149971-2	chr2	46149472	46150472	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	453367.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	14.3	6.45	9.25	8.77	4.67	12.86	7.39	5.75	7.49
Merged-chr10-14020443-1	chr10	14019943	14020943	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	54064.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.01	8.75	1.85	8.77	5.13	4.82	3.17	1.77	3.75
Merged-chr12-24697809-2	chr12	24697305	24698305	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-10449.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	1.72	1.38	3.7	2.02	0.47	0.0	1.06	2.21	7.49
Merged-chr14-21847788-3	chr14	21847239	21848239	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026965, exon 6 of 7)	exon (NM_026965, exon 6 of 7)	161.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	34.32	17.51	19.42	31.71	28.92	24.11	19.01	16.36	9.37
Merged-chr7-112103097-2	chr7	112102603	112103603	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133758, intron 22 of 27)	intron (NM_133758, intron 22 of 27)	55593.0	NM_001360260	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	4.58	4.61	8.32	6.07	6.53	13.66	15.84	11.94	6.87
Merged-chr8-22945035-2	chr8	22944571	22945571	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29765.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	14.3	11.98	4.62	14.17	13.53	4.02	15.84	7.96	5.0
Merged-chr6-90435349-2	chr6	90434844	90435844	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6864.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	5.15	1.84	2.77	2.02	0.47	8.84	1.06	2.21	8.74
Merged-chr1-36836612-2	chr1	36836103	36837103	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 8 of 40)	intron (NM_018872, intron 8 of 40)	57619.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	17.16	14.28	13.87	9.45	7.46	9.65	9.51	11.05	9.99
Merged-chr2-84454213-2	chr2	84453723	84454723	+	738.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355271, intron 3 of 8)	intron (NM_001355271, intron 3 of 8)	19951.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	6.29	5.07	0.0	2.7	0.47	0.0	4.22	6.63	1.25
Merged-chr10-42679859-2	chr10	42679385	42680385	+	738.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 1 of 5)	intron (NM_172416, intron 1 of 5)	969.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	102.4	99.07	87.87	86.36	107.76	68.32	133.08	105.68	48.09
Merged-chr10-121297542-3	chr10	121297062	121298062	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 6 of 12)	intron (NM_001361015, intron 6 of 12)	13834.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.15	3.23	1.85	12.14	2.8	12.86	2.11	3.54	6.25
Merged-chr7-64327162-3	chr7	64326670	64327670	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172742, intron 13 of 15)	intron (NM_172742, intron 13 of 15)	39500.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	8.58	3.23	9.25	4.05	3.27	2.41	4.22	6.19	7.49
Merged-chr1-171735118-3	chr1	171734606	171735606	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32026.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.0	3.69	1.85	10.12	6.53	1.61	11.62	11.5	8.74
Merged-chr17-66107057-3	chr17	66106568	66107568	+	738.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4478.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	1.14	6.91	5.55	2.7	2.33	0.0	10.56	3.98	6.25
Merged-chr18-57621478-3	chr18	57620985	57621985	+	738.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	intron (NM_001311063, intron 5 of 5)	17100.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	3.43	11.06	9.25	4.05	3.73	4.82	9.51	2.21	6.87
Merged-chr2-160618823-3	chr2	160618305	160619305	+	738.4111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-27092.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	70.93	86.17	48.1	60.05	77.91	69.13	72.88	80.92	29.98
Merged-chr18-56823132-1	chr18	56822632	56823632	+	738.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	102416.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	6.86	12.9	0.92	4.05	3.27	4.02	5.28	1.33	4.37
Merged-chr9-21436321-3	chr9	21435849	21436849	+	738.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	11441.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	32.04	24.42	24.97	18.89	32.19	29.74	32.74	23.88	19.98
Merged-chr3-8929974-3	chr3	8929459	8930459	+	738.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-6102.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	23.45	21.66	14.8	19.57	17.26	16.88	13.73	17.24	7.49
Merged-chr5-31940869-2	chr5	31940370	31941370	+	738.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-195602.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	25.74	24.88	18.5	28.34	14.93	16.08	17.96	13.71	11.24
Merged-chr1-36869816-2	chr1	36869310	36870310	+	738.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018872, intron 4 of 40)	intron (NM_018872, intron 4 of 40)	69717.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	23.45	13.36	8.32	13.49	7.0	11.25	8.45	5.75	8.74
Merged-chr13-107700431-3	chr13	107699918	107700918	+	738.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13021.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	2.29	6.45	0.0	13.49	2.8	5.63	3.17	3.98	7.49
Merged-chr4-129791152-2	chr4	129790665	129791665	+	738.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29314.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	23.45	40.09	60.12	26.31	24.72	28.13	22.18	20.78	18.11
Merged-chr6-134544318-2	chr6	134543810	134544810	+	738.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	22603.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	35.47	30.41	26.82	33.06	30.32	21.7	69.71	57.92	41.84
Merged-chr18-56459193-3	chr18	56458652	56459652	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	27020.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	29.17	28.57	21.27	35.09	25.19	32.15	26.4	29.63	14.99
Merged-chr1-176862363-1	chr1	176861863	176862863	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357390, intron 9 of 18)	intron (NM_001357390, intron 9 of 18)	-26230.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	5.72	5.07	0.0	7.42	1.4	0.0	2.11	2.21	3.75
Merged-chrX-36820403-3	chrX	36819914	36820914	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3214.0	NR_131979	69591.0	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	5.72	1.84	0.0	3.37	0.0	1.61	0.0	1.33	2.5
Merged-chr5-98185469-3	chr5	98184985	98185985	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029947, exon 4 of 4)	exon (NM_029947, exon 4 of 4)	499.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	1.72	2.3	0.92	5.4	0.47	0.0	0.0	0.44	1.25
Merged-chr2-165997767-3	chr2	165997268	165998268	+	738.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	intron (NM_008679, intron 1 of 22)	5131.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	31.46	31.33	22.2	33.74	23.33	40.19	24.29	42.89	41.22
Merged-chrX-157644496-1	chrX	157643996	157644996	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-45781.0	NM_172307	270669.0	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	1.72	3.23	1.85	4.05	2.33	1.61	2.11	1.33	9.99
Merged-chr12-3862393-1	chr12	3861893	3862893	+	738.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045884)	promoter-TSS (NR_045884)	-149.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	33.18	18.89	7.4	35.76	25.66	9.65	28.52	26.09	13.12
Merged-chr9-32493835-3	chr9	32493340	32494340	+	738.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	47612.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.15	11.98	9.25	20.92	8.4	12.86	7.39	8.4	9.99
Merged-chr7-112405203-2	chr7	112404691	112405691	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027587, intron 7 of 9)	ORR1E|LTR|ERVL-MaLR	-22515.0	NM_020606	57342.0	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	7.44	11.06	5.55	9.45	5.6	8.04	5.28	5.31	5.0
Merged-chr6-72093386-2	chr6	72092902	72093902	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4206.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	16.59	22.58	29.6	24.29	20.99	29.74	31.69	26.53	27.48
Merged-chr16-78215906-2	chr16	78215430	78216430	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39524.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	11.44	11.06	10.17	23.62	15.39	11.25	12.67	15.48	18.11
Merged-chr18-37806288-2	chr18	37805798	37806798	+	738.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033581)	promoter-TSS (NM_033581)	-112.0	NM_033581	93706.0	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	3.43	6.91	1.85	4.05	2.8	3.22	4.22	1.77	2.5
Merged-chr11-75324620-3	chr11	75324128	75325128	+	738.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026653, intron 5 of 16)	Lx8|LINE|L1	23755.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	49.77	40.09	23.12	31.04	17.26	17.68	40.14	38.91	38.72
Merged-chr13-67516199-1	chr13	67515699	67516699	+	738.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_133228, exon 4 of 4)	3' UTR (NM_133228, exon 4 of 4)	10032.0	NM_133228	170763.0	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	2.29	4.15	7.4	2.7	1.87	2.41	16.9	17.69	11.24
Merged-chr5-76973701-3	chr5	76973190	76974190	+	738.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1011.0	NM_025691	66661.0	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	6.29	11.98	5.55	11.47	8.86	12.86	14.79	6.63	8.74
Merged-chr8-4105801-1	chr8	4105301	4106301	+	738.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026956)	promoter-TSS (NM_026956)	-37.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	16.59	21.2	21.27	15.52	22.39	23.31	6.34	6.63	8.12
Merged-chr1-192087252-3	chr1	192086750	192087750	+	738.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	L2|LINE|L2	5349.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	27.46	23.5	15.72	12.82	10.73	13.66	10.56	14.15	11.24
Merged-chr13-111894872-1	chr13	111894372	111895372	+	738.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26936.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	19.45	15.21	20.35	22.27	23.33	24.11	15.84	12.38	7.49
Merged-chr13-70643870-2	chr13	70643333	70644333	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	2.86	1.84	1.85	1.35	2.33	3.22	0.0	0.88	5.0
Merged-chr18-23900255-2	chr18	23899740	23900740	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-54448.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.58	4.61	7.4	7.42	4.67	9.65	5.28	2.21	6.25
Merged-chr17-50666554-2	chr17	50666012	50667012	+	738.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 4 of 5)	MTC|LTR|ERVL-MaLR	-32169.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	9.72	6.91	9.25	6.07	4.67	4.82	5.28	0.88	0.0
Merged-chr6-145289210-2	chr6	145288708	145289708	+	738.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38656.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	9.15	4.61	5.55	12.14	6.06	1.61	11.62	9.29	3.75
Merged-chr14-73238618-3	chr14	73238091	73239091	+	738.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175116, exon 1 of 1)	5' UTR (NM_175116, exon 1 of 1)	700.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	228.25	282.92	187.77	209.84	213.66	193.71	220.74	313.05	148.01
Merged-chr7-127229037-2	chr7	127228523	127229523	+	738.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4038.0	NM_001360912	233887.0	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	10.3	6.45	3.7	5.4	5.13	11.25	8.45	6.19	5.0
Merged-chr12-104103587-2	chr12	104103098	104104098	+	738.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172953, intron 3 of 4)	intron (NM_172953, intron 3 of 4)	2485.0	NM_172953	268591.0	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	1.14	0.92	0.0	2.7	0.0	1.61	10.56	1.33	9.37
Merged-chr1-107528482-3	chr1	107527982	107528982	+	738.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198028)	promoter-TSS (NM_198028)	-521.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	4.0	6.45	3.7	5.4	3.73	1.61	5.28	3.54	3.75
Merged-chr4-151977944-3	chr4	151977433	151978433	+	738.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172704, intron 11 of 15)	intron (NM_172704, intron 11 of 15)	11053.0	NM_175152	69876.0	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	3.43	2.3	3.7	6.75	3.73	14.47	10.56	1.33	7.49
Merged-chr18-46335171-3	chr18	46334575	46335575	+	738.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23147.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	17.16	23.96	12.02	17.54	19.59	32.15	17.96	15.48	11.87
Merged-chr13-23728329-2	chr13	23727834	23728834	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10473.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	73.22	109.21	83.25	72.19	56.45	107.71	67.6	84.45	62.45
Merged-chr11-76578064-2	chr11	76577564	76578564	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198894)	promoter-TSS (NM_198894)	-325.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	2.29	2.76	8.32	6.75	4.67	9.65	2.11	1.77	9.99
Merged-chr13-109759953-3	chr13	109759447	109760447	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 5 of 16)	intron (NM_011056, intron 5 of 16)	-143862.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	7.44	6.45	3.7	9.45	7.0	6.43	4.22	5.31	5.0
Merged-chr7-4705282-1	chr7	4704782	4705782	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168572, exon 10 of 10)	3' UTR (NM_001168572, exon 10 of 10)	14354.0	NM_001168572	381979.0	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	6.86	0.46	6.47	6.07	2.8	0.0	2.11	0.0	2.5
Merged-chr10-85928581-2	chr10	85928066	85929066	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163614)	promoter-TSS (NM_001163614)	75.0	NM_001163614	67341.0	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	4.0	5.53	5.55	0.67	3.73	2.41	1.06	0.88	1.25
Merged-chr4-111350956-1	chr4	111350456	111351456	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 6 of 12)	intron (NM_001284190, intron 6 of 12)	-64050.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	6.29	6.45	4.62	7.42	2.8	4.82	2.11	1.77	3.75
Merged-chr13-40940256-1	chr13	40939756	40940756	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133219, intron 1 of 2)	intron (NM_133219, intron 1 of 2)	22622.0	NM_133219	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	1.72	3.23	0.0	10.8	7.46	6.43	6.34	2.65	0.62
Merged-chr6-136547239-1	chr6	136546739	136547739	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	28388.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	15.45	13.36	12.95	26.99	18.19	16.08	16.9	11.94	6.25
Merged-chr1-167284880-2	chr1	167284389	167285389	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_030724, exon 1 of 7)	5' UTR (NM_030724, exon 1 of 7)	238.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	6.86	0.46	0.92	7.42	3.73	0.0	7.39	0.44	3.75
Merged-chr16-50841875-2	chr16	50841384	50842384	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58475.0	NR_131005	78639.0	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	2.86	2.3	1.85	80.29	3.73	3.22	1.06	2.65	0.0
Merged-chr10-117078475-3	chr10	117077990	117078990	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 7 of 9)	ORR1C1|LTR|ERVL-MaLR	-14638.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	2.29	1.84	9.25	4.72	0.47	1.61	2.11	2.21	2.5
Merged-chr13-13549974-1	chr13	13549474	13550474	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26B_MM|LTR|ERVK	-40435.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	4.58	4.61	5.55	2.02	3.73	7.23	2.11	2.21	7.49
Merged-chr3-82995545-2	chr3	82995045	82996045	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12179.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	2.29	1.38	0.92	2.7	1.87	0.0	3.17	1.33	4.37
Merged-chr7-84665570-1	chr7	84665070	84666070	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360577, intron 1 of 7)	intron (NM_001360577, intron 1 of 7)	13826.0	NM_022985	65098.0	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	8.01	5.53	7.4	9.45	3.73	8.04	4.22	6.19	7.49
Merged-chr4-19741154-2	chr4	19740650	19741650	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-21264.0	NR_151541	102632246.0		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	9.15	12.9	15.72	8.1	14.0	18.49	15.84	16.8	9.37
Merged-chr13-9082771-1	chr13	9082271	9083271	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11110.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	56.63	54.83	33.3	72.87	42.45	57.07	62.31	53.06	31.85
Merged-chr1-77356202-1	chr1	77355702	77356702	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140566.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.86	3.69	9.25	7.42	3.73	6.43	8.45	6.19	6.25
Merged-chr5-142904902-1	chr5	142904402	142905402	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007393, intron 3 of 5)	intron (NM_007393, intron 3 of 5)	1852.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	28.03	28.57	37.92	31.71	14.0	18.49	33.8	27.41	27.48
Merged-chr3-31107891-1	chr3	31107391	31108391	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	12833.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	21.17	36.4	12.95	32.39	29.39	24.92	43.3	39.35	26.23
Merged-chr2-52941079-1	chr2	52940579	52941579	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	83211.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	88.67	111.51	61.05	95.14	117.09	92.44	87.66	139.28	76.19
Merged-chr16-57385410-1	chr16	57384910	57385910	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	32133.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	9.72	13.36	9.25	6.07	4.67	11.25	10.56	3.98	3.75
Merged-chr13-91093355-1	chr13	91092855	91093855	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130632.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	14.87	11.06	14.8	14.84	18.19	14.47	13.73	8.4	3.12
Merged-chr1-179232559-1	chr1	179232059	179233059	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285482.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	10.3	7.37	13.87	3.37	4.2	4.82	5.28	3.1	6.25
Merged-chr10-41978574-1	chr10	41978074	41979074	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034858, intron 6 of 17)	intron (NM_001034858, intron 6 of 17)	39808.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	6.29	7.37	9.25	16.19	23.33	12.86	16.9	11.5	11.87
Merged-chr7-4597178-1	chr7	4596678	4597678	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207270, intron 5 of 19)	intron (NM_207270, intron 5 of 19)	6863.0	NM_207270	545902.0	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	4.58	3.23	7.4	8.1	0.93	1.61	4.22	0.44	1.25
Merged-chr8-104395539-1	chr8	104395039	104396039	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153582, exon 1 of 4)	exon (NM_153582, exon 1 of 4)	268.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	42.9	26.26	37.92	39.81	23.79	36.97	31.69	9.29	16.86
Merged-chrX-7763378-1	chrX	7762878	7763878	+	738.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001271491)	promoter-TSS (NM_001271491)	-565.0	NM_001105197	209446.0	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	262.57	284.3	227.54	387.96	344.75	348.04	209.12	240.98	169.87
Merged-chr7-35099695-1	chr7	35099195	35100195	+	738.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19598.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	25.74	15.21	27.75	30.36	14.46	18.49	15.84	11.05	15.61
Merged-chr7-100879820-1	chr7	100879320	100880320	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 13 of 20)	intron (NM_001081116, intron 13 of 20)	2589.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	4.58	2.3	1.85	2.7	0.0	0.0	3.17	1.33	6.87
Merged-chr7-19272960-1	chr7	19272460	19273460	+	738.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-1106.0	NM_001282022	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	58.92	51.61	59.2	45.88	20.99	60.28	73.93	59.25	41.84
Merged-chr15-80012077-3	chr15	80011569	80012569	+	737.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	intron (NM_011057, intron 1 of 6)	2739.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	32.61	27.19	31.45	57.35	70.91	73.14	21.12	17.69	9.99
Merged-chr10-94944870-3	chr10	94944383	94945383	+	737.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018797)	promoter-TSS (NM_018797)	-305.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	8.01	2.76	0.0	8.1	4.67	3.22	4.22	2.65	0.0
Merged-chr1-64299114-3	chr1	64298582	64299582	+	737.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177693.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	33.18	32.72	40.7	35.09	19.59	55.46	39.08	48.64	38.1
Merged-chr10-44428118-3	chr10	44427683	44428683	+	737.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30565.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	29.17	26.26	29.6	10.8	11.2	13.66	17.96	26.09	8.74
Merged-chr12-69454661-3	chr12	69454170	69455170	+	737.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20880.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	14.87	9.22	8.32	24.96	11.66	16.08	11.62	10.17	6.25
Merged-chr2-68843528-3	chr2	68843028	68844028	+	737.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17913.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	7.44	5.07	9.25	5.4	2.33	12.86	8.45	7.07	9.99
Merged-chr2-167230747-2	chr2	167230234	167231234	+	737.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	9803.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	20.59	18.89	5.55	25.64	22.39	17.68	25.35	20.78	18.11
Merged-chr16-55819409-4	chr16	55818882	55819882	+	737.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 3 of 12)	intron (NM_001159395, intron 3 of 12)	2756.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	34.9	29.95	21.27	22.27	15.39	26.53	23.24	17.69	25.61
Merged-chr14-14068076-4	chr14	14067610	14068610	+	737.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139227, intron 4 of 11)	intron (NM_139227, intron 4 of 11)	52794.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	36.61	38.71	32.37	29.01	29.86	26.53	28.52	33.16	31.23
Merged-chr9-102633154-2	chr9	102632649	102633649	+	737.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181394, intron 2 of 2)	intron (NM_181394, intron 2 of 2)	6853.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	2.29	2.3	1.85	4.72	3.27	3.22	6.34	0.44	2.5
Merged-chr8-119841206-2	chr8	119840722	119841722	+	737.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028071)	promoter-TSS (NM_028071)	-643.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	31.46	18.89	40.7	28.34	15.86	32.15	29.57	19.9	19.36
Merged-chr2-137854744-2	chr2	137854253	137855253	+	737.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-401831.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.0	2.76	2.77	3.37	4.67	1.61	6.34	5.75	5.0
Merged-chr6-57514511-1	chr6	57514011	57515011	+	737.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175523, intron 5 of 6)	intron (NM_175523, intron 5 of 6)	20915.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	21.17	24.88	22.2	14.17	11.66	21.7	11.62	19.9	12.49
Merged-chr1-152618094-3	chr1	152617560	152618560	+	737.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	7157.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	63.5	71.42	36.07	72.87	72.78	112.53	89.78	84.45	39.35
Merged-chr9-45275363-2	chr9	45274955	45275955	+	737.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_B2|LTR|ERVK	-6306.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	72.65	80.18	63.82	105.93	74.17	71.54	79.21	65.0	38.1
Merged-chr2-71598576-3	chr2	71598073	71599073	+	737.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	MLT1N2|LTR|ERVL-MaLR	-51819.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	5.72	2.76	5.55	8.1	1.87	3.22	15.84	22.11	13.12
Merged-chr1-155810303-1	chr1	155809803	155810803	+	737.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024945, intron 1 of 11)	intron (NM_001024945, intron 1 of 11)	2596.0	NM_023268	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	14.87	7.37	9.25	12.82	6.53	12.86	3.17	2.21	1.87
Merged-chr2-122569642-2	chr2	122569146	122570146	+	737.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41631.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	25.17	25.34	20.35	33.74	34.06	17.68	58.09	47.75	26.85
Merged-chr4-152214221-2	chr4	152213724	152214724	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133348, intron 2 of 8)	intron (NM_133348, intron 2 of 8)	14380.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.43	0.46	1.85	3.37	1.87	3.22	3.17	0.0	1.25
Merged-chr13-5920539-2	chr13	5920048	5921048	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	59059.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	20.02	17.05	24.05	18.89	6.06	12.06	11.62	21.67	14.99
Merged-chr12-80642876-2	chr12	80642391	80643391	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347409, intron 1 of 4)	B3|SINE|B2	1220.0	NM_007951	13877.0	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	ERH mRNA splicing and mitosis factor	protein-coding	40.04	32.72	27.75	23.62	27.06	32.96	31.69	34.05	26.23
Merged-chr3-97158123-3	chr3	97157670	97158670	+	737.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019800)	promoter-TSS (NM_019800)	-607.0	NM_019800	66659.0	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	31.46	58.06	29.6	39.81	41.05	38.58	43.3	41.56	33.72
Merged-chr9-40806788-5	chr9	40806309	40807309	+	737.719971	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5536.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	77.23	78.33	48.1	80.97	69.98	49.83	105.62	134.42	36.22
Merged-chr17-34899631-9	chr17	34899065	34900065	+	737.685181	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286573, exon 2 of 26)	exon (NM_001286573, exon 2 of 26)	591.0	NM_145830	110147.0	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	124.14	118.42	156.32	114.03	131.09	196.93	137.3	175.54	146.14
Merged-chr7-128002279-3	chr7	128001795	128002795	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2083.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	12.59	11.52	14.8	10.8	6.53	8.04	7.39	13.71	2.5
Merged-chr1-91758863-1	chr1	91758363	91759363	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42598.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	8.01	8.29	3.7	11.47	14.46	9.65	20.07	16.8	9.37
Merged-chrX-151344694-3	chrX	151344187	151345187	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198105, exon 1 of 16)	exon (NM_198105, exon 1 of 16)	464.0	NM_198105	207375.0	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	8.01	6.91	29.6	19.57	12.6	29.74	19.01	10.61	16.86
Merged-chr17-87796523-3	chr17	87796019	87797019	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	1475.0	NM_199251	210741.0	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	1.14	1.38	1.85	2.7	2.33	1.61	4.22	2.21	2.5
Merged-chr2-109913633-1	chr2	109913133	109914133	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-314.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	6.29	8.29	7.4	13.49	18.66	16.08	7.39	17.24	11.24
Merged-chr12-11209816-1	chr12	11209316	11210316	+	737.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019544)	promoter-TSS (NM_019544)	-868.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	1.14	1.84	0.0	6.75	2.33	6.43	0.0	1.77	3.12
Merged-chr17-87734881-3	chr17	87734395	87735395	+	737.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	62338.0	NM_008628	17685.0	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	6.86	3.23	0.0	5.4	1.4	1.61	10.56	7.52	6.25
Merged-chr17-84112267-2	chr17	84111756	84112756	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33596.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	35.47	29.95	31.45	37.78	24.72	26.53	21.12	13.71	28.1
Merged-chr3-59342667-2	chr3	59342163	59343163	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162884, intron 1 of 6)	L1_Mm|LINE|L1	1593.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	14.3	15.21	12.02	23.62	13.53	34.56	6.34	8.4	7.49
Merged-chr5-64134113-2	chr5	64133627	64134627	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26133.0	NM_019636	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	12.01	4.15	1.85	4.05	3.73	1.61	1.06	1.33	8.12
Merged-chr14-55039118-2	chr14	55038622	55039622	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073535, intron 1 of 1)	intron (NR_073535, intron 1 of 1)	660.0	NR_073535	100151693.0	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.43	5.99	1.85	4.05	6.06	0.0	2.11	2.65	9.99
Merged-chr4-105265243-2	chr4	105264739	105265739	+	737.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	107892.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	16.59	18.43	10.17	18.22	13.53	18.49	16.9	15.92	12.49
Merged-chr15-4821980-3	chr15	4821460	4822460	+	737.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-76777.0	NM_001166066	223825.0	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	40.04	45.62	62.9	60.72	38.72	36.17	45.42	51.73	40.59
Merged-chr4-148742817-3	chr4	148742323	148743323	+	737.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-61569.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	4.0	0.46	6.47	3.37	1.4	7.23	3.17	0.88	3.12
Merged-chr6-134263105-3	chr6	134262600	134263600	+	737.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007961, exon 7 of 8)	exon (NM_007961, exon 7 of 8)	-133229.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	159.6	153.44	107.29	134.27	104.5	113.33	65.48	52.18	30.6
Merged-chr17-6781416-4	chr17	6780831	6781831	+	737.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009510, intron 1 of 12)	intron (NM_009510, intron 1 of 12)	1449.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	44.62	54.37	26.82	41.16	25.19	22.51	40.14	36.26	21.23
Merged-chr14-55577994-2	chr14	55577498	55578498	+	737.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011189)	promoter-TSS (NM_011189)	-496.0	NM_011189	19186.0	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	76.66	69.58	77.7	45.88	52.25	75.56	88.72	93.74	38.1
Merged-chr6-56756338-2	chr6	56755827	56756827	+	737.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030235, intron 15 of 15)	intron (NM_030235, intron 15 of 15)	40886.0	NM_001362211	210973.0	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	4.0	11.98	3.7	16.19	7.0	25.72	9.51	11.5	16.24
Merged-chr4-101217384-3	chr4	101216877	101217877	+	737.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	47905.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	36.61	44.7	21.27	49.93	26.59	65.91	46.47	28.3	29.35
Merged-chr5-145232727-3	chr5	145232222	145233222	+	737.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028298, intron 1 of 3)	intron (NM_028298, intron 1 of 3)	963.0	NM_028298	72611.0	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	86.38	105.98	75.85	82.32	95.63	49.83	94.0	92.41	41.84
Merged-chr2-52591102-3	chr2	52590602	52591602	+	737.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-32491.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	5.72	2.3	2.77	5.4	3.73	1.61	5.28	3.54	6.87
Merged-chr1-9815958-3	chr1	9815457	9816457	+	737.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177547, intron 1 of 16)	intron (NM_177547, intron 1 of 16)	17827.0	NM_177547	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	6.29	8.29	5.55	12.14	6.06	11.25	8.45	7.52	7.49
Merged-chr5-42984968-2	chr5	42984459	42985459	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248504.0	NM_175937	231207.0	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	7.44	6.45	0.0	5.4	7.0	6.43	1.06	0.88	4.37
Merged-chr16-3907901-1	chr16	3907401	3908401	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153801, intron 1 of 3)	intron (NR_153801, intron 1 of 3)	752.0	NR_153801	105246059.0		NR_153801		Gm41410	-	predicted gene, 41410	ncRNA	32.61	38.25	14.8	16.19	6.06	28.94	19.01	15.48	21.23
Merged-chr6-17385639-2	chr6	17385154	17386154	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	78014.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	2.86	4.15	0.0	0.67	4.67	3.22	3.17	1.77	1.25
Merged-chr9-78615847-1	chr9	78615347	78616347	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_153098, exon 1 of 33)	5' UTR (NM_153098, exon 1 of 33)	301.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	2.86	2.76	5.55	2.7	6.53	3.22	3.17	1.33	3.75
Merged-chr5-114647817-1	chr5	114647317	114648317	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10604.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	20.59	12.9	24.05	15.52	11.66	20.9	26.4	12.82	3.75
Merged-chrM-9824-1	chrM	9324	10324	+	737.5	./atac_peak_files/aj_kupffer_control_young.idr		Intergenic											0.57	0.0	0.0	0.67	0.47	0.0	19.01	3.98	1.25
Merged-chr18-4364319-1	chr18	4363819	4364819	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	10772.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	13.16	6.91	14.8	4.05	3.73	14.47	11.62	11.94	4.37
Merged-chrX-56346392-2	chrX	56345917	56346917	+	737.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359276)	promoter-TSS (NM_001359276)	20.0	NM_030139	78619.0	Mm.207345	NM_030139	ENSMUSG00000073176	Zfp449	9530049C15Rik	zinc finger protein 449	protein-coding	2.29	7.37	1.85	1.35	5.6	6.43	6.34	3.98	9.99
Merged-chr14-103857165-1	chr14	103856665	103857665	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12689.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	3.43	4.15	1.85	6.75	3.27	4.82	1.06	1.33	5.0
Merged-chr2-50943347-2	chr2	50942850	50943850	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33666.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.86	2.76	3.7	22.94	26.12	16.88	9.51	10.17	8.74
Merged-chr2-68825132-2	chr2	68824593	68825593	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-36348.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	22.31	20.27	19.42	29.01	11.66	24.92	29.57	20.34	21.23
Merged-chr7-101566873-2	chr7	101566368	101567368	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-6003.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	2.86	5.07	2.77	16.19	10.73	9.65	12.67	7.07	8.74
Merged-chr6-142525035-2	chr6	142524547	142525547	+	737.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17090.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	2.29	3.23	2.77	0.67	4.2	4.02	0.0	2.65	5.0
Merged-chr4-24851001-3	chr4	24850459	24851459	+	737.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033531, exon 1 of 10)	5' UTR (NM_001033531, exon 1 of 10)	165.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	9.72	8.29	1.85	19.57	21.46	10.45	6.34	6.63	6.25
Merged-chr2-30719112-3	chr2	30718577	30719577	+	737.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2133.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	142.44	86.17	29.6	181.5	144.62	83.59	44.36	32.28	16.86
Merged-chr4-148497883-2	chr4	148497381	148498381	+	737.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039554, intron 2 of 4)	intron (NM_001039554, intron 2 of 4)	2581.0	NM_001039554	654812.0	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	17.16	15.67	23.12	24.96	9.8	20.9	4.22	5.31	3.12
Merged-chr12-4599954-2	chr12	4599473	4600473	+	737.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198969, intron 1 of 16)	intron (NM_001198969, intron 1 of 16)	6965.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	11.44	21.66	4.62	12.82	17.26	3.22	21.12	8.84	6.25
Merged-chr9-95575818-2	chr9	95575312	95576312	+	737.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15995.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	96.11	85.71	85.1	117.4	99.83	85.2	162.65	88.43	83.06
Merged-chr7-44962870-2	chr7	44962361	44963361	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357670, intron 12 of 18)	intron (NM_001357670, intron 12 of 18)	11990.0	NM_001357670	78070.0	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik|CPT I-C|CPT IC|CPT1-B|CPTI-B	carnitine palmitoyltransferase 1c	protein-coding	8.01	5.07	3.7	7.42	2.33	5.63	6.34	3.54	11.87
Merged-chr2-30750221-2	chr2	30749716	30750716	+	737.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	29006.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	9.15	3.69	1.85	11.47	2.8	4.02	3.17	3.1	6.25
Merged-chr14-121421686-2	chr14	121421189	121422189	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42459.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	18.31	24.42	5.55	16.87	21.46	36.97	10.56	24.32	21.23
Merged-chr6-120480548-2	chr6	120480041	120481041	+	737.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008359, intron 12 of 12)	intron (NM_008359, intron 12 of 12)	13266.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	6.29	6.91	13.87	15.52	9.33	18.49	15.84	11.94	7.49
Merged-chr15-27724532-2	chr15	27724034	27725034	+	737.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42992.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	65.21	68.66	61.05	70.17	85.37	84.4	68.65	103.47	49.96
Merged-chr15-59906665-1	chr15	59906165	59907165	+	737.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109953.0	NM_027668	71088.0	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	2.86	2.3	5.55	1.35	4.2	0.0	3.17	0.44	1.25
Merged-chr9-110297264-3	chr9	110296774	110297774	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7918.0	NM_001081381	72341.0	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	2.86	1.38	0.0	3.37	1.4	5.63	3.17	1.33	2.5
Merged-chr1-135719660-1	chr1	135719160	135720160	+	737.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360782)	promoter-TSS (NM_001360782)	-403.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	6.29	3.69	5.55	7.42	3.73	2.41	4.22	6.63	0.0
Merged-chr7-142967670-1	chr7	142967170	142968170	+	737.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008554, intron 2 of 2)	CpG	1594.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	3.43	3.23	5.55	2.02	3.73	0.0	5.28	3.54	1.25
Merged-chr10-94687851-2	chr10	94687358	94688358	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029852)	promoter-TSS (NM_029852)	755.0	NR_015524	67723.0	Mm.116284	NR_015524		Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	116.7	193.53	149.84	157.88	192.67	152.72	170.05	200.3	120.53
Merged-chr4-134929211-3	chr4	134928698	134929698	+	737.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1782.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	37.18	21.66	56.42	12.82	9.8	42.6	24.29	30.51	36.85
Merged-chr10-10318952-3	chr10	10318447	10319447	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	153367.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	1.72	3.69	0.0	11.47	7.93	1.61	4.22	1.77	2.5
Merged-chr5-92603019-3	chr5	92602524	92603524	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175096)	promoter-TSS (NM_175096)	-27.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	6.29	1.84	4.62	6.07	4.67	0.0	2.11	2.21	6.87
Merged-chr13-110373028-3	chr13	110372518	110373518	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-15846.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	5.15	1.38	5.55	5.4	0.47	5.63	3.17	2.65	8.74
Merged-chr7-88357276-3	chr7	88356784	88357784	+	737.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72989.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	6.86	4.15	0.0	6.75	2.33	4.02	4.22	3.98	8.74
Merged-chr16-58501216-2	chr16	58500727	58501727	+	737.266663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	L1_Mus4|LINE|L1	22199.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	166.47	167.73	139.67	165.31	138.09	163.17	144.7	189.25	160.5
Merged-chr6-142785517-2	chr6	142785025	142786025	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001145390)	TTS (NM_001145390)	18941.0	NM_001145390	330440.0	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	1.72	3.69	0.0	2.7	1.87	0.0	3.17	0.44	3.75
Merged-chr12-117853533-2	chr12	117853038	117854038	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	9677.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.72	3.69	0.0	0.67	0.47	3.22	2.11	2.21	1.25
Merged-chr9-61056944-2	chr9	61056439	61057439	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39870.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	13.73	12.44	27.75	19.57	7.93	12.86	24.29	26.97	11.87
Merged-chr11-63897943-2	chr11	63897421	63898421	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018805, intron 1 of 1)	intron (NM_018805, intron 1 of 1)	24363.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	29.17	41.01	39.77	8.77	8.4	12.06	34.85	22.55	45.59
Merged-chr13-34257128-2	chr13	34256628	34257628	+	737.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	88054.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	48.62	51.61	26.82	41.83	43.85	23.31	41.19	45.99	31.23
Merged-chr2-72853413-3	chr2	72852865	72853865	+	737.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39648.0	NR_102349	76218.0	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	30.89	29.95	24.05	47.23	23.33	5.63	53.87	41.12	23.11
Merged-chr15-38074324-3	chr15	38073826	38074826	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4528.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	9.15	11.98	9.25	24.29	14.46	7.23	19.01	11.05	2.5
Merged-chr2-116977184-3	chr2	116976654	116977654	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77002.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	109.26	125.79	98.97	109.98	80.71	105.3	110.9	139.28	89.31
Merged-chr13-48873752-3	chr13	48873224	48874224	+	737.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2839.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	33.75	27.65	28.67	38.46	35.45	35.37	29.57	16.8	26.85
Merged-chr13-34864596-3	chr13	34864104	34865104	+	737.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10890.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	8.01	6.91	0.0	4.05	3.73	3.22	3.17	4.42	12.49
Merged-chr2-72369492-3	chr2	72368981	72369981	+	737.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 5 of 19)	intron (NM_023057, intron 5 of 19)	83780.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	21.17	18.43	21.27	15.52	12.6	14.47	38.02	31.39	23.11
Merged-chr4-53350767-2	chr4	53350274	53351274	+	737.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-80542.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	7.44	10.6	5.55	14.84	5.6	1.61	19.01	7.96	3.75
Merged-chr13-111924668-2	chr13	111924187	111925187	+	737.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56751.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	3.43	1.84	5.55	10.12	11.66	13.66	6.34	1.77	5.0
Merged-chr5-92136883-2	chr5	92136410	92137410	+	737.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	815.0	NM_001359197	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	17.16	14.28	1.85	15.52	10.26	6.43	16.9	12.82	5.0
Merged-chr10-80684394-2	chr10	80683912	80684912	+	737.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172457)	TTS (NM_172457)	-8119.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	9.72	5.99	11.1	8.77	1.4	6.43	2.11	0.44	8.74
Merged-chr1-86372191-2	chr1	86371696	86372696	+	737.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12622.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	4.58	0.92	3.7	3.37	2.33	0.0	0.0	2.21	0.0
Merged-chr2-32260809-3	chr2	32260298	32261298	+	737.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011675)	promoter-TSS (NM_011675)	-693.0	NM_011675	22245.0	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	68.65	56.22	23.12	53.3	27.06	38.58	52.81	95.07	42.47
Merged-chr15-80799313-1	chr15	80798813	80799813	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177124, intron 1 of 21)	(TC)n|Simple_repeat|Simple_repeat	703.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	76.08	86.63	41.62	70.17	57.85	58.68	123.57	151.22	64.33
Merged-chr2-168575044-2	chr2	168574547	168575547	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	15318.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	14.87	10.6	8.32	8.77	3.73	8.04	6.34	4.42	0.0
Merged-chr10-70250948-3	chr10	70250445	70251445	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025807, intron 1 of 5)	intron (NM_025807, intron 1 of 5)	5669.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	44.05	61.75	74.0	56.68	37.79	65.11	80.27	81.36	65.58
Merged-chr6-87451679-1	chr6	87451179	87452179	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22685.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	5.72	2.3	2.77	6.75	8.4	8.04	6.34	1.33	5.0
Merged-chr3-84345567-1	chr3	84345067	84346067	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34354.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	6.86	5.07	3.7	25.64	23.79	36.97	13.73	14.59	5.0
Merged-chr19-11970555-1	chr19	11970055	11971055	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033174, intron 1 of 13)	intron (NM_001033174, intron 1 of 13)	4711.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	16.59	11.98	9.25	16.87	13.53	17.68	26.4	20.34	16.24
Merged-chr16-22470205-1	chr16	22469705	22470705	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 23 of 23)	intron (NM_001346673, intron 23 of 23)	-30635.0	NM_023794	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.72	6.91	0.0	7.42	4.2	1.61	10.56	3.54	8.74
Merged-chr6-29208489-1	chr6	29207989	29208989	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302934, intron 3 of 14)	intron (NM_001302934, intron 3 of 14)	3808.0	NM_011829	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.15	2.76	1.85	7.42	4.67	4.82	20.07	8.84	11.24
Merged-chr2-26932692-1	chr2	26932192	26933192	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	819.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	260.28	304.12	168.34	232.1	244.45	188.09	174.27	196.32	132.4
Merged-chr9-37248471-1	chr9	37247971	37248971	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	7267.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	73.79	81.1	89.72	92.44	88.64	82.79	55.98	72.96	46.22
Merged-chr6-39562381-2	chr6	39561888	39562888	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4554.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	4.0	1.84	5.55	6.07	8.86	12.06	13.73	10.61	6.87
Merged-chr4-55364102-2	chr4	55363598	55364598	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	MIRc|SINE|MIR	14056.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	41.19	54.37	48.1	39.13	39.65	31.35	39.08	50.41	41.84
Merged-chr16-39193461-1	chr16	39192961	39193961	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4511.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	8.01	4.61	3.7	6.75	10.73	6.43	12.67	7.96	7.49
Merged-chr6-82985217-1	chr6	82984717	82985717	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	RLTR20A3_MM|LTR|ERVK	38295.0	NM_033079	110958.0	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	24.03	6.45	22.2	22.94	10.26	6.43	22.18	9.29	12.49
Merged-chr2-14944212-1	chr2	14943712	14944712	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	70556.0	NM_001309519	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	3.43	2.3	0.0	5.4	0.93	4.82	4.22	2.21	0.0
Merged-chr7-113143710-1	chr7	113143210	113144210	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1695.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	6.86	2.3	0.0	2.7	2.8	3.22	1.06	0.88	1.87
Merged-chr15-55502596-1	chr15	55502096	55503096	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 45 of 47)	intron (NM_181277, intron 45 of 47)	54716.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	4.0	2.76	5.55	9.45	6.06	1.61	4.22	2.21	0.0
Merged-chr13-23683783-1	chr13	23683283	23684283	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290380)	promoter-TSS (NM_001290380)	176.0	NM_178189	319164.0	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	148.73	181.09	98.97	148.44	125.49	156.74	133.08	145.47	98.68
Merged-chr11-4629860-1	chr11	4629360	4630360	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027797, intron 1 of 3)	MIR3|SINE|MIR	151.0	NR_027797	327860.0	Mm.186065	NM_177799	ENSMUSG00000056288	Gm11961	-	predicted gene 11961	ncRNA	6.29	5.07	9.25	12.82	7.0	2.41	9.51	9.73	2.5
Merged-chr1-86531083-1	chr1	86530583	86531583	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001360831)	TTS (NM_001360831)	4526.0	NM_001360830	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	10.3	9.68	7.4	4.05	2.33	6.43	8.45	0.88	8.12
Merged-chr1-13214650-1	chr1	13214150	13215150	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 4 of 22)	intron (NM_008678, intron 4 of 22)	-87487.0	NM_001081209	383491.0	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	4.58	5.53	7.4	5.4	4.2	9.65	3.17	3.54	2.5
Merged-chr4-129121106-2	chr4	129120602	129121602	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286083)	promoter-TSS (NM_001286083)	201.0	NM_010471	15444.0	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.57	0.46	3.7	3.37	0.47	1.61	2.11	0.88	3.75
Merged-chr13-105290817-1	chr13	105290317	105291317	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 1 of 7)	MMVL30-int|LTR|ERV1	2197.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	17.16	11.06	3.7	17.54	8.4	4.82	7.39	5.75	6.25
Merged-chr8-61581469-1	chr8	61580969	61581969	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	9700.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	34.9	35.94	76.77	4.72	3.73	11.25	33.8	26.53	17.49
Merged-chr5-115125340-1	chr5	115124840	115125840	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175352, exon 5 of 5)	3' UTR (NM_175352, exon 5 of 5)	-5994.0	NM_007383	11409.0	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	5.72	3.23	1.85	4.72	0.93	1.61	1.06	1.33	5.0
Merged-chr2-60046759-1	chr2	60046259	60047259	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	L1MD2|LINE|L1	78981.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	27.46	17.51	18.5	29.01	23.33	18.49	13.73	8.84	13.74
Merged-chr12-102495788-1	chr12	102495288	102496288	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013747, intron 12 of 12)	intron (NM_013747, intron 12 of 12)	25878.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	10.3	13.82	21.27	19.57	27.52	19.29	21.12	19.01	14.36
Merged-chr10-111096004-1	chr10	111095504	111096504	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68798.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.86	5.07	1.85	4.72	1.87	11.25	8.45	4.42	3.75
Merged-chr11-48837709-3	chr11	48837227	48838227	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347446, exon 1 of 7)	exon (NM_001347446, exon 1 of 7)	256.0	NM_001347446	94089.0	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	11.44	12.44	5.55	20.92	8.4	12.86	20.07	6.63	5.0
Merged-chr14-59201993-2	chr14	59201478	59202478	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027764, intron 1 of 11)	intron (NM_027764, intron 1 of 11)	750.0	NM_001360610	71330.0	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	49.77	40.55	24.97	53.3	68.58	22.51	51.75	35.82	28.1
Merged-chr10-95323630-1	chr10	95323130	95324130	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330138)	promoter-TSS (NM_001330138)	79.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	225.96	313.79	254.36	276.63	258.45	249.17	299.96	369.21	205.47
Merged-chr8-77419950-2	chr8	77419445	77420445	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 7 of 22)	intron (NM_030113, intron 7 of 22)	-97111.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	1.72	3.69	3.7	4.72	5.13	0.8	1.06	3.54	3.75
Merged-chr2-91182935-2	chr2	91182450	91183450	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145527)	promoter-TSS (NM_145527)	97.0	NM_001177719	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	33.75	38.71	75.85	68.82	42.45	57.87	40.14	31.39	32.48
Merged-chr17-78249120-2	chr17	78248617	78249617	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48869.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	56.06	44.7	13.87	42.51	32.19	17.68	43.3	41.12	24.36
Merged-chr12-75819332-1	chr12	75818832	75819832	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	1014.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	3.43	8.75	12.02	12.82	13.53	8.04	13.73	6.63	3.75
Merged-chr18-60757251-2	chr18	60756634	60757634	+	737.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8469.0	NM_008306	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	42.33	41.47	32.37	70.17	52.72	51.44	40.14	36.7	21.23
Merged-chr19-10749032-1	chr19	10748532	10749532	+	737.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027805, intron 1 of 3)	intron (NR_027805, intron 1 of 3)	8085.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	6.29	4.61	1.85	2.7	0.93	3.22	5.28	3.1	0.0
Merged-chr1-161963186-1	chr1	161962686	161963686	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204904, intron 3 of 6)	intron (NM_001204904, intron 3 of 6)	5962.0	NM_001204905	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	4.58	1.84	5.55	5.4	0.93	4.02	1.06	0.44	2.5
Merged-chr16-91935341-1	chr16	91934841	91935841	+	737.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3711.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	2.29	3.23	7.4	5.4	1.87	4.82	8.45	3.54	4.37
Merged-chr17-27557573-5	chr17	27557108	27558108	+	736.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039356, intron 2 of 5)	CpG-6152	955.0	NM_001166477	111241.0	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1b	Hmga1-rs1|Hmgi-rs1	high mobility group AT-hook 1B	protein-coding	129.86	60.82	81.4	95.81	54.58	64.3	92.94	37.58	46.22
Merged-chr12-72520755-2	chr12	72520228	72521228	+	736.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15629.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	3.43	4.15	1.85	6.75	5.6	2.41	2.11	0.88	0.62
Merged-chr13-111467494-3	chr13	111466980	111467980	+	736.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028487, intron 2 of 12)	intron (NM_028487, intron 2 of 12)	22647.0	NM_028487	73274.0	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	34.9	30.87	35.15	26.31	14.93	24.92	32.74	26.53	48.71
Merged-chr11-98018933-3	chr11	98018466	98019466	+	736.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159320)	promoter-TSS (NM_001159320)	-594.0	NM_001159320	12295.0	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	8.58	8.29	11.1	10.12	1.4	11.25	15.84	17.24	15.61
Merged-chr13-58306619-2	chr13	58306129	58307129	+	736.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175214, intron 12 of 16)	L1MB8|LINE|L1	6520.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	10.87	6.91	1.85	3.37	8.86	1.61	1.06	0.88	1.25
Merged-chr5-21488749-2	chr5	21488243	21489243	+	736.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 19 of 20)	HAL1|LINE|L1	-54784.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	10.87	10.6	5.55	7.42	7.93	11.25	16.9	15.03	10.62
Merged-chr16-3885563-2	chr16	3885047	3886047	+	736.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	928.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	37.18	47.46	78.62	32.39	49.92	69.13	91.89	75.61	40.59
Merged-chr5-62933810-2	chr5	62933316	62934316	+	736.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	119993.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	4.58	4.15	1.85	8.1	8.86	8.84	27.46	19.46	21.86
Merged-chr3-121847434-5	chr3	121846877	121847877	+	736.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32075.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	13.73	9.68	14.8	9.45	6.53	12.86	11.62	15.48	18.74
Merged-chr2-126602427-3	chr2	126601932	126602932	+	736.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008230, intron 7 of 11)	intron (NM_008230, intron 7 of 11)	16246.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	8.01	3.23	0.0	8.1	7.93	3.22	7.39	8.84	6.25
Merged-chr4-147938890-2	chr4	147938382	147939382	+	736.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2013.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	44.05	63.13	34.22	37.78	41.05	50.64	52.81	62.35	56.21
Merged-chr16-27389987-3	chr16	27389394	27390394	+	736.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025615, intron 1 of 9)	intron (NM_001025615, intron 1 of 9)	938.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	117.27	141.92	114.69	112.0	104.5	110.92	147.87	128.67	80.56
Merged-chr18-82470204-2	chr18	82469696	82470696	+	736.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4927.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	8.01	6.91	15.72	11.47	7.0	9.65	3.17	5.75	5.62
Merged-chr3-89715182-2	chr3	89714761	89715761	+	736.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	23.0	NM_001357958	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	26.89	11.52	18.5	16.87	22.39	6.43	32.74	13.27	6.87
Merged-chr16-93797567-3	chr16	93797033	93798033	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	intron (NM_027293, intron 27 of 36)	-2632.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	44.05	35.02	37.0	47.23	39.19	18.49	43.3	47.75	25.61
Merged-chr15-85383631-3	chr15	85383134	85384134	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016843, intron 6 of 11)	intron (NM_016843, intron 6 of 11)	47253.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	28.6	37.78	45.32	31.71	37.79	53.05	19.01	24.76	24.98
Merged-chrX-11629503-3	chrX	11628993	11629993	+	736.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	301671.0	NM_001114529	236663.0	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	2.29	3.69	5.55	2.7	2.8	0.0	4.22	4.86	0.62
Merged-chr17-29549267-3	chr17	29548769	29549769	+	736.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198647)	promoter-TSS (NM_198647)	324.0	NM_001162901	71138.0	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	28.6	24.42	29.6	34.41	12.6	1.61	9.51	7.07	1.87
Merged-chr1-153901354-4	chr1	153900827	153901827	+	736.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008131, intron 1 of 6)	intron (NM_008131, intron 1 of 6)	1398.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	48.05	47.92	87.87	72.87	35.92	46.62	60.2	58.81	43.72
Merged-chr15-80220468-2	chr15	80219960	80220960	+	736.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13620.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	36.61	16.13	14.8	49.93	30.79	36.97	68.65	49.52	45.59
Merged-chr10-80087683-3	chr10	80087158	80088158	+	736.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359637, intron 1 of 3)	ID_B1|SINE|B4	-12219.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	17.73	15.67	11.1	26.31	10.73	9.65	7.39	11.94	14.36
Merged-chr15-84944245-2	chr15	84943797	84944797	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7326.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	8.58	9.68	15.72	14.84	12.13	11.25	17.96	10.17	9.37
Merged-chr1-170863216-2	chr1	170862714	170863714	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 1 of 15)	L2|LINE|L2	4557.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	18.88	12.9	13.87	22.27	11.2	10.45	20.07	5.31	5.0
Merged-chr10-12836636-2	chr10	12836124	12837124	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	25111.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	6.29	4.15	6.47	13.49	7.93	14.47	6.34	5.75	11.24
Merged-chr18-62726791-1	chr18	62726291	62727291	+	736.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168423, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	14596.0	NM_001168423	100038417.0	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	5.15	10.6	15.72	8.1	2.33	3.22	11.62	9.73	13.74
Merged-chr4-133806016-3	chr4	133805482	133806482	+	736.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52371.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	195.64	145.61	123.02	162.61	152.55	113.33	191.17	171.12	69.95
Merged-chr14-21981653-3	chr14	21981170	21982170	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7931.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.57	0.92	0.0	4.05	1.87	0.0	3.17	0.44	1.25
Merged-chr10-77519358-3	chr10	77518852	77519852	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3539.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	11.44	11.52	12.95	7.42	5.6	24.92	14.79	6.19	15.61
Merged-chr15-100039612-3	chr15	100039090	100040090	+	736.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	926.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	383.28	352.04	232.16	313.07	303.7	203.36	314.74	391.32	199.22
Merged-chr1-153413580-3	chr1	153413060	153414060	+	736.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033736, intron 1 of 3)	B2_Mm2|SINE|B2	673.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	95.53	106.44	56.42	96.48	106.36	77.97	94.0	108.77	50.59
Merged-chrX-53320801-2	chrX	53320287	53321287	+	736.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153099, intron 9 of 9)	intron (NR_153099, intron 9 of 9)	47363.0	NR_153100	73866.0	Mm.84527	NM_028671	ENSMUSG00000036013	Fam122c	4930432H15Rik|4930527G05Rik	family with sequence similarity 122, member C	protein-coding	1.14	5.07	7.4	2.7	1.4	4.02	2.11	2.21	1.25
Merged-chr5-21358812-3	chr5	21358312	21359312	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-13861.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	33.18	32.25	22.2	35.09	32.66	24.92	42.25	67.21	14.99
Merged-chr11-8606005-3	chr11	8605548	8606548	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	58487.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	53.77	44.24	53.65	51.95	43.39	31.35	49.64	39.35	16.86
Merged-chr10-80618396-1	chr10	80617896	80618896	+	736.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4384.0	NM_134002	103236.0	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	12.59	5.07	11.1	13.49	8.4	12.06	13.73	11.5	11.87
Merged-chr16-28911244-3	chr16	28910749	28911749	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177718, intron 1 of 1)	intron (NM_177718, intron 1 of 1)	18449.0	NM_177718	239796.0	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	54.35	83.4	61.97	25.64	29.39	28.94	42.25	40.68	27.48
Merged-chr15-89359809-3	chr15	89359300	89360300	+	736.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115132, intron 1 of 19)	intron (NM_001115132, intron 1 of 19)	4081.0	NM_001271601	52683.0	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	6.29	7.37	5.55	3.37	7.0	6.43	13.73	7.52	5.0
Merged-chr3-144825366-2	chr3	144824865	144825865	+	736.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139148, exon 13 of 14)	exon (NM_139148, exon 13 of 14)	-5871.0	NM_030601	80797.0	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	3.43	4.61	0.0	1.35	2.33	1.61	1.06	0.44	2.5
Merged-chr4-135972108-2	chr4	135971615	135972615	+	736.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011942, intron 1 of 9)	intron (NM_011942, intron 1 of 9)	479.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	39.47	30.87	37.0	57.35	37.32	28.13	50.7	41.56	21.23
Merged-chr6-117881460-3	chr6	117880941	117881941	+	736.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	18560.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	131.0	119.8	104.52	100.53	76.51	103.69	126.74	171.12	79.94
Merged-chr10-121256627-2	chr10	121256115	121257115	+	736.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53966.0	NR_152796	74647.0	Mm.370609	NR_152796	ENSMUSG00000112846	4930432O09Rik	-	RIKEN cDNA 4930432O09 gene	ncRNA	1.14	1.84	1.85	3.37	1.4	4.82	2.11	0.0	2.5
Merged-chr4-141977523-3	chr4	141977037	141978037	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-5455.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	6.29	6.91	5.55	2.7	3.73	6.43	7.39	9.73	8.12
Merged-chr11-62821992-3	chr11	62821515	62822515	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053169, intron 1 of 5)	intron (NM_053169, intron 1 of 5)	1762.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	6.86	10.14	0.0	6.75	6.06	4.02	3.17	3.98	5.0
Merged-chr19-41495618-3	chr19	41495117	41496117	+	736.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29635.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	11.44	22.12	22.2	11.47	15.86	9.65	12.67	22.55	7.49
Merged-chr19-55254685-3	chr19	55254148	55255148	+	736.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	1279.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	70.36	77.87	106.37	77.59	75.57	85.2	121.46	116.73	60.58
Merged-chr8-83090267-3	chr8	83089763	83090763	+	736.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75089.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	45.19	60.36	53.65	75.57	48.05	46.62	53.87	41.56	18.11
Merged-chr10-128933762-1	chr10	128933262	128934262	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330160)	promoter-TSS (NM_001330160)	-51.0	NM_008398	16404.0	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	8.01	0.92	6.47	0.67	1.4	0.8	6.34	2.65	3.12
Merged-chr2-79646495-2	chr2	79645996	79646996	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080558, intron 8 of 17)	intron (NM_080558, intron 8 of 17)	11071.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	9.72	3.69	5.55	10.12	4.2	5.63	6.34	5.75	6.87
Merged-chrX-7322507-2	chrX	7322035	7323035	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3177.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	29.75	23.5	11.1	9.45	9.8	10.45	22.18	8.84	8.74
Merged-chr10-24150328-3	chr10	24149868	24150868	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 1 of 9)	intron (NM_016797, intron 1 of 9)	1051.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	83.52	101.37	64.75	57.35	57.38	74.75	94.0	80.92	55.58
Merged-chr10-91029188-2	chr10	91028676	91029676	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042558, intron 17 of 26)	L1MB4|LINE|L1	53567.0	NM_001042558	11783.0	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	6.86	7.83	9.25	5.4	7.46	9.65	0.0	2.65	1.25
Merged-chr11-104544752-2	chr11	104544253	104545253	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145436, intron 1 of 18)	intron (NM_145436, intron 1 of 18)	5867.0	NM_001285990	217232.0	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	74.94	117.5	56.42	128.87	124.56	80.38	111.96	156.97	55.58
Merged-chr2-30708377-1	chr2	30707877	30708877	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12833.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	86.95	73.26	54.57	86.36	71.84	99.67	50.7	38.47	66.82
Merged-chr19-55781866-2	chr19	55781385	55782385	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	40075.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	14.3	8.29	19.42	17.54	7.93	16.88	13.73	4.42	7.49
Merged-chr2-130473194-1	chr2	130472694	130473694	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	intron (NM_001355161, intron 1 of 21)	22916.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	23.45	22.58	14.8	53.3	44.32	37.78	24.29	23.43	13.74
Merged-chr11-32348310-1	chr11	32347810	32348810	+	736.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177364, intron 1 of 12)	intron (NM_177364, intron 1 of 12)	499.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	134.43	137.31	112.84	20.24	28.46	34.56	23.24	11.05	28.73
Merged-chr10-69217353-3	chr10	69216867	69217867	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	4173.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	33.18	41.47	57.35	44.53	40.12	55.46	68.65	76.05	51.84
Merged-chr3-59344307-2	chr3	59343777	59344777	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162884)	promoter-TSS (NM_001162884)	-21.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	9.72	11.98	11.1	14.84	9.8	8.04	7.39	4.42	7.49
Merged-chr13-49300846-2	chr13	49300347	49301347	+	736.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 1 of 17)	intron (NM_015759, intron 1 of 17)	8361.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	6.29	4.15	9.25	16.19	16.79	8.04	12.67	8.84	16.86
Merged-chr3-88000578-2	chr3	88000059	88001059	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001109758)	promoter-TSS (NM_001109758)	-203.0	NM_001109758	12032.0	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	3.43	1.38	3.7	7.42	1.87	0.0	3.17	2.21	1.25
Merged-chr4-141598995-1	chr4	141598495	141599495	+	736.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	929.0	NM_001163256	74202.0	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	6.29	4.61	0.0	5.4	3.73	3.22	4.22	0.88	2.5
Merged-chr7-30198831-2	chr7	30198311	30199311	+	736.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3658.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	3.43	4.61	5.55	1.35	0.0	3.22	1.06	0.88	1.25
Merged-chrX-167195525-3	chrX	167195027	167196027	+	736.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13691.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	49.2	71.88	43.47	44.53	34.99	75.56	46.47	60.58	35.6
Merged-chr5-96922840-3	chr5	96922293	96923293	+	736.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131152, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	1521.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	52.63	64.05	51.8	62.75	48.05	66.71	50.7	58.37	38.1
Merged-chr1-36069362-3	chr1	36068815	36069815	+	736.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	intron (NM_015818, intron 1 of 1)	915.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	132.14	150.68	119.32	134.94	152.55	154.33	171.1	157.85	103.05
Merged-chrX-12002284-1	chrX	12001784	12002784	+	736.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78269.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.57	0.92	3.7	2.02	0.93	1.61	3.17	0.88	0.0
Merged-chr12-35329936-2	chr12	35329445	35330445	+	736.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-135048.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	5.72	6.45	9.25	6.07	10.73	4.82	5.28	7.52	8.12
Merged-chr18-39249170-3	chr18	39248660	39249660	+	736.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	238085.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	18.88	18.43	19.42	13.49	9.8	9.65	13.73	19.01	11.24
Merged-chr19-14692355-2	chr19	14691853	14692853	+	736.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94170.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	9.72	7.83	0.0	6.07	6.06	8.04	3.17	5.31	3.75
Merged-chr19-10458290-2	chr19	10457799	10458799	+	736.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111140)	promoter-TSS (NM_001111140)	-852.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	4.0	4.15	1.85	0.67	3.27	3.22	3.17	3.1	0.0
Merged-chr6-84661809-1	chr6	84661309	84662309	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-67901.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	16.02	16.59	8.32	24.96	16.79	18.49	11.62	13.27	7.49
Merged-chr6-125274941-3	chr6	125274425	125275425	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	9400.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	4.58	3.69	3.7	2.7	4.2	5.63	3.17	4.86	3.75
Merged-chr2-164924655-3	chr2	164924146	164925146	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12896.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	3.43	5.07	12.95	7.42	2.33	0.0	3.17	0.44	0.0
Merged-chr10-17919205-1	chr10	17918705	17919705	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	28862.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	2.86	1.84	12.95	6.75	7.0	1.61	1.06	4.42	3.12
Merged-chr10-78160919-1	chr10	78160419	78161419	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8849.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	20.59	14.75	15.72	12.82	5.6	8.04	9.51	10.17	3.75
Merged-chr2-71594684-1	chr2	71594184	71595184	+	736.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-47930.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	4.58	4.15	0.0	2.7	4.67	0.0	8.45	3.1	13.74
Merged-chr11-103233118-3	chr11	103232608	103233608	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 6 of 15)	intron (NM_016896, intron 6 of 15)	-14676.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	10.3	3.69	12.95	10.12	7.0	8.04	11.62	4.42	6.25
Merged-chr4-129377860-1	chr4	129377360	129378360	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_028603, exon 1 of 5)	5' UTR (NM_028603, exon 1 of 5)	168.0	NM_028603	73680.0	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	28.6	22.58	26.82	33.74	28.46	27.33	31.69	24.76	26.23
Merged-chr9-109095556-1	chr9	109095056	109096056	+	736.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172775, exon 1 of 38)	5' UTR (NM_172775, exon 1 of 38)	120.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	9.15	3.69	7.4	6.07	0.93	6.43	2.11	0.0	1.25
Merged-chr2-117146831-3	chr2	117146325	117147325	+	736.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	25754.0	NM_033524	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	66.36	83.4	67.52	67.47	44.78	64.3	51.75	68.09	23.11
Merged-chr19-14239709-3	chr19	14239202	14240202	+	736.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196248.0	NR_152176	667433.0	Mm.128913	NR_152176		Gm8630	EG667433	predicted gene 8630	ncRNA	3.43	1.84	8.32	2.7	5.13	1.61	3.17	0.88	0.0
Merged-chr11-106673695-3	chr11	106673204	106674204	+	736.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	41577.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	121.28	159.89	109.14	121.45	87.24	127.8	71.82	92.86	79.32
Merged-chr2-145823807-2	chr2	145823310	145824310	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	intron (NM_028724, intron 4 of 12)	37694.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	131.0	188.0	104.52	193.64	144.62	146.29	168.99	228.6	118.04
Merged-chr7-144942319-4	chr7	144941819	144942819	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2394.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	64.07	82.48	61.97	66.12	55.51	77.16	74.99	118.06	46.22
Merged-chr6-129740465-2	chr6	129739951	129740951	+	736.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177155)	promoter-TSS (NM_177155)	33.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	6.29	2.3	0.92	4.05	2.33	0.0	2.11	3.54	4.37
Merged-chr7-132765059-1	chr7	132764559	132765559	+	736.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11857.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	18.88	20.74	29.6	58.7	26.59	19.29	29.57	11.94	18.74
Merged-chr9-107757603-2	chr9	107757102	107758102	+	736.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153191, intron 5 of 23)	intron (NR_153191, intron 5 of 23)	13400.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	23.45	21.66	14.8	15.52	13.06	14.47	4.22	2.65	5.0
Merged-chr8-34101178-2	chr8	34100692	34101692	+	736.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293759, intron 2 of 7)	intron (NM_001293759, intron 2 of 7)	6622.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	4.58	3.69	1.85	2.7	3.27	0.0	4.22	1.33	3.75
Merged-chr1-193138850-3	chr1	193138353	193139353	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8583.0	NR_151719	215193.0	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	4.0	5.99	5.55	2.7	4.2	3.22	5.28	4.42	1.25
Merged-chr11-4266631-1	chr11	4266131	4267131	+	736.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039537)	promoter-TSS (NM_001039537)	-165.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	8.58	6.45	4.62	6.07	0.93	4.02	4.22	2.65	2.5
Merged-chr13-106760433-4	chr13	106760009	106761009	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176449.0	NM_001360897	76582.0	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	6.86	4.61	9.25	5.4	6.53	8.84	3.17	2.21	8.74
Merged-chr2-128776674-3	chr2	128776189	128777189	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 10 of 18)	intron (NM_008587, intron 10 of 18)	-41614.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	15.45	16.59	17.57	15.52	5.13	27.33	22.18	14.59	16.86
Merged-chr6-86583772-3	chr6	86583282	86584282	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44392.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	45.76	60.36	61.05	55.33	35.45	45.82	39.08	55.27	62.45
Merged-chr15-82148744-1	chr15	82148244	82149244	+	736.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033218, intron 1 of 18)	intron (NM_033218, intron 1 of 18)	1475.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	16.59	10.6	7.4	18.22	10.26	6.43	17.96	11.5	9.37
Merged-chr10-20916606-3	chr10	20916103	20917103	+	736.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35944.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	6.86	6.91	9.25	10.8	5.13	12.86	6.34	8.84	11.24
Merged-chr2-173812046-2	chr2	173811540	173812540	+	736.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74469.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	4.58	2.76	1.85	1.35	0.93	2.41	3.17	2.21	2.5
Merged-chr3-27629651-2	chr3	27629140	27630140	+	736.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-44645.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	5.15	8.75	20.35	2.02	7.0	4.82	6.34	5.75	7.49
Merged-chr10-128212999-3	chr10	128212537	128213537	+	736.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1243.0	NM_025716	66701.0	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	9.72	4.15	0.0	8.77	7.0	3.22	4.22	6.63	6.25
Merged-chr1-135259231-3	chr1	135258735	135259735	+	736.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163131)	promoter-TSS (NM_001163131)	-763.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	11.44	2.76	3.7	2.02	0.93	4.82	3.17	6.63	4.37
Merged-chr1-171839778-3	chr1	171839299	171840299	+	736.122253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289470, intron 1 of 8)	intron (NM_001289470, intron 1 of 8)	102.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	89.81	89.39	41.62	80.97	61.11	54.66	69.71	88.43	46.84
Merged-chr8-120608097-3	chr8	120607582	120608582	+	736.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_197988)	TTS (NM_197988)	-19007.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	12.59	6.91	5.55	13.49	2.8	11.25	12.67	10.61	14.99
Merged-chr18-61454741-3	chr18	61454245	61455245	+	736.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	29862.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	26.31	16.13	8.32	19.57	6.53	11.25	20.07	18.57	5.62
Merged-chr11-119947036-1	chr11	119946536	119947536	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	3944.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	7.44	2.76	2.77	7.42	5.13	11.25	4.22	1.77	1.25
Merged-chr5-31228923-2	chr5	31228434	31229434	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8389.0	NM_008014	14208.0	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	4.58	3.23	7.4	0.67	2.8	14.47	3.17	0.44	8.74
Merged-chr13-102847780-1	chr13	102847280	102848280	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 5 of 28)	intron (NM_175171, intron 5 of 28)	87525.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	6.86	7.83	5.55	8.77	13.06	8.04	24.29	19.46	8.74
Merged-chr12-113017205-1	chr12	113016705	113017705	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	intron (NM_001081170, intron 1 of 23)	2697.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	44.62	31.33	50.87	15.52	7.93	24.11	12.67	6.19	23.73
Merged-chr12-108808201-2	chr12	108807696	108808696	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009537, intron 2 of 4)	intron (NM_009537, intron 2 of 4)	14885.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	12.59	11.06	9.25	14.17	13.53	30.54	14.79	9.29	12.49
Merged-chrX-133898372-3	chrX	133897875	133898875	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019656)	promoter-TSS (NM_019656)	54.0	NM_019656	56496.0	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	3.43	0.92	4.62	1.35	2.8	1.61	1.06	1.33	0.0
Merged-chr14-7880810-1	chr14	7880310	7881310	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 4 of 45)	intron (NM_001081427, intron 4 of 45)	62853.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	8.01	3.69	0.0	5.4	4.67	4.82	4.22	1.33	6.25
Merged-chr3-65905768-2	chr3	65905274	65906274	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52475.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.15	2.76	0.0	2.7	1.87	1.61	4.22	1.33	6.25
Merged-chr13-115178386-1	chr13	115177886	115178886	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76422.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.86	3.69	5.55	8.1	2.33	1.61	2.11	4.42	5.0
Merged-chr9-120020433-2	chr9	120019934	120020934	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011724, intron 1 of 2)	intron (NM_011724, intron 1 of 2)	3164.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	4.0	4.15	1.85	2.7	2.8	8.04	2.11	1.77	2.5
Merged-chr2-129340420-1	chr2	129339920	129340920	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29482.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	9.15	6.45	1.85	18.22	8.86	8.04	28.52	11.5	14.99
Merged-chr16-75831601-1	chr16	75831101	75832101	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64783.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	3.43	3.23	5.55	8.1	8.4	2.41	3.17	4.86	2.5
Merged-chr19-46518665-1	chr19	46518165	46519165	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17017.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	13.73	8.75	12.95	10.8	6.06	6.43	9.51	2.21	5.0
Merged-chr7-99530080-3	chr7	99529586	99530586	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-5400.0	NM_178220	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	21.74	18.43	24.05	21.59	9.8	21.7	15.84	11.5	24.98
Merged-chr4-132800129-1	chr4	132799629	132800629	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3765.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	13.73	21.2	29.6	17.54	18.19	29.74	19.01	29.63	18.74
Merged-chrX-163929737-1	chrX	163929237	163930237	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026887)	TTS (NM_026887)	20720.0	NM_001290379	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	8.58	15.67	12.02	2.7	7.93	6.43	9.51	15.92	8.12
Merged-chr5-103722159-1	chr5	103721659	103722659	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-32003.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	91.53	104.6	61.05	63.42	42.45	38.58	94.0	99.49	69.32
Merged-chr5-150097919-1	chr5	150097419	150098419	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79244.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.29	0.0	1.85	5.4	0.0	2.41	3.17	1.33	2.5
Merged-chr7-19399972-1	chr7	19399472	19400472	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001286038)	promoter-TSS (NM_001286038)	-51.0	NM_146182	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	2.29	1.38	0.0	0.0	1.4	1.61	3.17	0.0	2.5
Merged-chr8-25519342-1	chr8	25518842	25519842	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010206, exon 1 of 18)	5' UTR (NM_010206, exon 1 of 18)	583.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	12.59	7.37	7.4	11.47	8.86	6.43	19.01	15.03	11.87
Merged-chr19-16318749-1	chr19	16318249	16319249	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 3 of 6)	intron (NM_008139, intron 3 of 6)	-3745.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	5.72	5.99	12.95	6.75	6.06	6.43	9.51	7.52	6.25
Merged-chr12-102704840-1	chr12	102704340	102705340	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172584)	promoter-TSS (NM_172584)	29.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	110.41	85.25	89.72	91.76	77.44	77.16	121.46	67.65	64.95
Merged-chr10-57734130-1	chr10	57733630	57734630	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039050, intron 4 of 4)	MTEa|LTR|ERVL-MaLR	-50793.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	13.16	5.53	4.62	17.54	11.2	18.49	6.34	7.96	5.0
Merged-chr8-120783855-1	chr8	120783355	120784355	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45216.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	6.86	4.15	11.1	18.89	7.93	8.84	13.73	11.94	8.74
Merged-chr4-133545514-2	chr4	133544988	133545988	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010948, intron 1 of 7)	intron (NM_010948, intron 1 of 7)	539.0	NM_010948	18221.0	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	120.7	114.74	120.24	127.52	100.77	110.12	117.24	113.64	46.84
Merged-chr18-44605652-1	chr18	44605152	44606152	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56013.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	4.0	4.61	0.0	3.37	1.4	4.82	6.34	2.21	0.0
Merged-chr13-119406794-1	chr13	119406294	119407294	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2217.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	16.02	15.67	14.8	12.82	18.19	20.9	22.18	25.2	17.49
Merged-chr7-102245353-2	chr7	102244841	102245841	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019566, intron 1 of 1)	intron (NM_019566, intron 1 of 1)	4777.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	27.46	41.01	31.45	24.96	23.79	77.16	55.98	42.45	76.82
Merged-chr11-19026865-1	chr11	19026365	19027365	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7896.0	NM_010789	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	7.44	1.84	9.25	1.35	3.27	3.22	6.34	1.77	2.5
Merged-chr13-38613517-1	chr13	38613017	38614017	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139063, intron 3 of 4)	intron (NM_139063, intron 3 of 4)	21592.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	9.72	7.83	16.65	13.49	10.26	25.72	10.56	4.42	9.99
Merged-chr5-136929228-1	chr5	136928728	136929728	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	10082.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	8.58	4.15	5.55	4.05	2.33	6.43	2.11	0.44	2.5
Merged-chr16-97533964-2	chr16	97533462	97534462	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2119.0	NR_003508	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	22.31	15.21	13.87	24.96	14.93	19.29	5.28	3.98	1.25
Merged-chr4-16089058-1	chr4	16088558	16089558	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74585.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	81.23	115.2	46.25	104.58	82.57	114.14	123.57	149.01	61.83
Merged-chr12-21369702-1	chr12	21369202	21370202	+	736.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291871, intron 1 of 18)	intron (NM_001291871, intron 1 of 18)	3930.0	NR_102380	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	151.59	215.19	155.39	147.76	177.74	159.15	245.04	384.69	156.76
Merged-chr18-24652761-2	chr18	24652298	24653298	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026779)	promoter-TSS (NM_026779)	-893.0	NM_026779	68591.0	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	13.16	12.44	17.57	16.87	7.0	14.47	6.34	8.4	1.25
Merged-chr1-152509385-1	chr1	152508885	152509885	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_177756, exon 12 of 12)	3' UTR (NM_177756, exon 12 of 12)	109518.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	4.0	3.69	2.77	4.05	1.4	8.04	5.28	2.65	6.25
Merged-chr11-54092401-2	chr11	54091895	54092895	+	736.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8529.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	147.59	142.38	86.02	164.63	143.68	122.18	195.39	221.53	82.44
Merged-chr4-62439862-1	chr4	62439362	62440362	+	736.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5136.0	NM_153504	76072.0	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	3.43	3.23	0.0	10.12	3.27	4.82	2.11	2.21	3.75
Merged-chr13-101548068-3	chr13	101547571	101548571	+	735.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33B|LTR|ERVL	144559.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	4.58	7.37	0.0	6.07	4.2	3.22	2.11	5.31	2.5
Merged-chr5-8622440-3	chr5	8622034	8623034	+	735.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198620, exon 1 of 10)	exon (NM_198620, exon 1 of 10)	418.0	NM_001347311	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	2.29	1.38	0.0	12.14	2.8	2.41	5.28	1.33	5.0
Merged-chr3-84337758-2	chr3	84337253	84338253	+	735.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32978.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	5.15	0.92	0.0	7.42	7.46	3.22	2.11	2.65	6.87
Merged-chr7-142982054-3	chr7	142981583	142982583	+	735.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12819.0	NM_008554	17173.0	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	2.29	4.61	6.47	3.37	1.87	3.22	5.28	2.21	3.75
Merged-chr12-44222124-3	chr12	44221635	44222635	+	735.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045113, exon 1 of 1)	non-coding (NR_045113, exon 1 of 1)	779.0	NR_045113	100039062.0	Mm.490648	NR_045113		Gm2027	-	nuclear assembly factor 1 homolog pseudogene	pseudo	29.75	26.26	25.9	31.04	19.59	19.29	14.79	10.17	8.74
Merged-chr1-63668990-3	chr1	63668500	63669500	+	735.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081658, intron 6 of 14)	MTD|LTR|ERVL-MaLR	17927.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	8.01	2.3	5.55	2.02	0.93	1.61	0.0	1.33	3.75
Merged-chr10-40133244-2	chr10	40132745	40133745	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	9009.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	14.87	17.51	11.1	26.99	14.0	22.51	10.56	7.52	5.0
Merged-chr2-60076964-2	chr2	60076457	60077457	+	735.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	48783.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	12.59	14.28	9.25	23.62	15.86	8.84	13.73	7.52	2.5
Merged-chr13-41017183-2	chr13	41016641	41017641	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_025387, exon 2 of 6)	5' UTR (NM_025387, exon 2 of 6)	891.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	86.38	128.1	74.0	107.95	133.42	85.2	143.64	151.66	68.7
Merged-chr1-65536469-2	chr1	65535983	65536983	+	735.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	225226.0	NM_139270	213527.0	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	5.15	5.99	3.7	7.42	7.0	12.86	8.45	11.05	11.87
Merged-chr2-80579433-3	chr2	80578899	80579899	+	735.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290745, intron 1 of 31)	intron (NM_001290745, intron 1 of 31)	1783.0	NM_001290745	50884.0	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	8.01	4.61	1.85	5.4	7.46	0.0	1.06	3.54	2.5
Merged-chr1-36556138-3	chr1	36555637	36556637	+	735.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304329, intron 1 of 14)	intron (NM_001304329, intron 1 of 14)	1420.0	NM_001304330	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	98.97	88.01	111.92	62.75	74.17	99.67	103.51	95.95	94.93
Merged-chr4-99191796-3	chr4	99191288	99192288	+	735.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2146.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	50.34	105.06	80.47	62.07	76.04	85.2	134.14	125.13	56.21
Merged-chr3-131701157-3	chr3	131700657	131701657	+	735.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135125.0	NM_001289477	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	10.3	5.53	1.85	10.12	6.06	3.22	10.56	5.75	7.49
Merged-chr2-109278847-2	chr2	109278351	109279351	+	735.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029790)	promoter-TSS (NM_029790)	-561.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	6.86	34.56	8.32	22.27	18.19	16.88	26.4	20.78	18.11
Merged-chr10-86879382-2	chr10	86878890	86879890	+	735.724976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 44 of 68)	intron (NM_138673, intron 44 of 68)	100385.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	33.18	29.49	42.55	43.86	27.99	36.17	32.74	28.3	39.35
Merged-chr11-117870818-3	chr11	117870308	117871308	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027919, intron 3 of 6)	intron (NM_027919, intron 3 of 6)	2718.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	7.44	11.52	7.4	7.42	1.87	1.61	2.11	3.54	1.25
Merged-chr14-47371867-3	chr14	47371377	47372377	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1983.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	5.15	12.44	1.85	4.05	7.93	3.22	9.51	6.19	9.99
Merged-chr16-76410491-3	chr16	76410019	76411019	+	735.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36692.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	24.03	19.81	18.5	22.94	18.66	11.25	36.97	37.14	12.49
Merged-chr10-50740284-2	chr10	50739793	50740793	+	735.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198007, intron 30 of 41)	intron (NM_198007, intron 30 of 41)	147624.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.0	10.6	5.55	13.49	9.33	2.41	12.67	4.42	9.99
Merged-chr7-139979162-3	chr7	139978667	139979667	+	735.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-412.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	18.31	9.68	7.4	31.04	19.59	32.15	7.39	7.07	5.0
Merged-chr2-148579228-1	chr2	148578728	148579728	+	735.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-93387.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.0	0.92	0.0	1.35	0.0	0.0	5.28	3.1	3.12
Merged-chr9-106296917-3	chr9	106296418	106297418	+	735.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15857.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	13.16	20.27	24.05	12.82	8.86	20.09	76.05	65.44	55.58
Merged-chr3-92150842-2	chr3	92150315	92151315	+	735.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8061.0	NM_027042	69332.0	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	1.14	0.92	0.0	3.37	1.4	1.61	2.11	2.21	1.25
Merged-chr17-56183539-2	chr17	56183004	56184004	+	735.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080837, intron 1 of 5)	intron (NM_080837, intron 1 of 5)	416.0	NM_080837	28106.0	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	190.49	188.92	89.72	218.61	226.72	132.63	175.33	159.18	56.83
Merged-chr17-78402065-3	chr17	78401563	78402563	+	735.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 4 of 9)	intron (NM_001360407, intron 4 of 9)	16089.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	37.76	25.34	13.87	38.46	33.59	24.11	29.57	23.43	15.61
Merged-chr2-131505897-3	chr2	131505405	131506405	+	735.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	14043.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	15.45	13.36	28.67	15.52	7.46	8.04	10.56	8.4	7.49
Merged-chr15-73426151-3	chr15	73425640	73426640	+	735.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2949.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	7.44	4.61	14.8	6.07	2.8	6.43	4.22	0.44	0.62
Merged-chr1-180971940-2	chr1	180971444	180972444	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144794, intron 19 of 22)	intron (NM_144794, intron 19 of 22)	29426.0	NM_144794	208795.0	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	57.78	40.09	52.72	62.75	34.06	39.39	47.53	56.16	28.73
Merged-chr10-87860270-2	chr10	87859770	87860770	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111276)	promoter-TSS (NM_001111276)	-841.0	NM_001111274	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	89.81	114.27	98.97	115.38	147.88	116.55	172.16	237.89	102.42
Merged-chr17-78372848-2	chr17	78372350	78373350	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 16 of 16)	intron (NM_015800, intron 16 of 16)	45302.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	33.18	31.33	28.67	31.71	23.79	45.82	24.29	25.65	19.98
Merged-chr2-166728439-3	chr2	166727941	166728941	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-14609.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	25.17	20.27	16.65	33.06	14.0	11.25	67.6	45.54	16.24
Merged-chr15-38198885-1	chr15	38198385	38199385	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20318.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	3.43	2.3	0.92	6.75	3.27	3.22	1.06	0.0	3.12
Merged-chr3-52179948-1	chr3	52179448	52180448	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74942.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	3.43	2.3	3.7	3.37	1.4	0.0	1.06	1.77	8.74
Merged-chr14-106787538-2	chr14	106787031	106788031	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-301011.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	1.14	3.69	1.85	6.07	6.06	1.61	0.0	2.65	8.12
Merged-chr4-3713234-1	chr4	3712734	3713734	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-1730.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	79.52	120.26	68.45	83.66	76.04	78.77	87.66	100.37	78.07
Merged-chr17-25868340-3	chr17	25867846	25868846	+	735.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026633, intron 2 of 4)	CpG	392.0	NM_026633	68241.0	Mm.328870	NM_026633	ENSMUSG00000025732	Mcrip2	9530058B02Rik|Fam195a	MAPK regulated corepressor interacting protein 2	protein-coding	88.1	73.26	62.9	105.26	83.97	72.34	94.0	86.22	45.59
Merged-chr3-148958863-1	chr3	148958363	148959363	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4228.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	42.9	40.09	29.6	74.22	69.98	63.5	43.3	53.5	2.5
Merged-chr16-38321572-2	chr16	38321090	38322090	+	735.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081025, intron 8 of 16)	intron (NM_001081025, intron 8 of 16)	20270.0	NM_001081025	320214.0	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|CFAP91|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.57	4.61	1.85	3.37	0.47	4.82	1.06	1.33	0.0
Merged-chr1-134075764-3	chr1	134075261	134076261	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007570, exon 2 of 2)	3' UTR (NM_007570, exon 2 of 2)	3394.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	19.45	11.06	3.7	12.82	10.26	19.29	10.56	9.73	9.37
Merged-chr1-153434010-3	chr1	153433512	153434512	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033162, intron 3 of 9)	MTD|LTR|ERVL-MaLR	8803.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	25.17	15.67	24.97	8.77	17.26	24.92	14.79	15.03	16.24
Merged-chr12-102290824-3	chr12	102290326	102291326	+	735.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	7185.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	14.87	6.91	2.77	11.47	6.06	5.63	5.28	4.42	8.74
Merged-chr2-35338591-2	chr2	35338090	35339090	+	735.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1581.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	82.38	99.53	73.07	74.89	87.7	125.39	121.46	110.1	94.3
Merged-chr9-57522315-3	chr9	57521819	57522819	+	735.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007747, intron 1 of 4)	intron (NM_007747, intron 1 of 4)	1087.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	123.56	149.75	106.37	141.02	114.29	111.73	172.16	233.91	128.03
Merged-chr13-99191188-2	chr13	99190695	99191695	+	735.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	6372.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	84.66	87.55	106.37	103.91	113.36	91.63	116.18	94.18	53.08
Merged-chr7-109986948-2	chr7	109986467	109987467	+	735.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-737.0	NM_153525	233724.0	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	119.56	166.8	74.0	113.35	151.62	109.32	110.9	196.76	88.06
Merged-chr12-31984851-3	chr12	31984330	31985330	+	735.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011158, intron 4 of 10)	Lx8|LINE|L1	-34585.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	4.58	1.84	9.25	6.75	6.06	1.61	9.51	5.75	6.25
Merged-chr6-124996761-2	chr6	124996303	124997303	+	735.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175696)	promoter-TSS (NM_175696)	83.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	26.89	28.57	49.95	26.31	22.86	50.64	19.01	7.96	3.12
Merged-chr4-151859470-2	chr4	151858938	151859938	+	735.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	intron (NM_001081557, intron 1 of 23)	2330.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	15.45	25.8	21.27	18.22	19.13	32.15	20.07	11.5	9.99
Merged-chr12-44919829-2	chr12	44919328	44920328	+	735.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	154655.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.0	5.99	5.55	8.77	10.26	8.04	2.11	4.86	7.49
Merged-chr19-21286755-6	chr19	21286260	21287260	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009551)	TTS (NM_009551)	14482.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	7.44	5.53	0.0	13.49	6.53	6.43	10.56	4.42	7.49
Merged-chr2-38473002-2	chr2	38472495	38473495	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38702.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	8.01	3.23	3.7	10.8	5.6	3.22	4.22	9.73	1.25
Merged-chr8-111325391-3	chr8	111324859	111325859	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310613, intron 4 of 10)	L1M5|LINE|L1	12846.0	NM_001310613	74568.0	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	11.44	15.21	14.8	13.49	7.0	23.31	11.62	7.52	10.62
Merged-chr18-38381414-1	chr18	38380914	38381914	+	735.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37493.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.01	5.53	5.55	11.47	1.87	8.04	2.11	3.98	2.5
Merged-chr10-17576056-3	chr10	17575560	17576560	+	735.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147168.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	28.6	38.71	45.32	27.66	37.32	44.21	33.8	28.3	41.22
Merged-chr5-93092500-3	chr5	93091981	93092981	+	735.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347377)	promoter-TSS (NM_001347377)	-935.0	NM_001009818	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	10.3	6.45	9.25	11.47	10.73	11.25	8.45	10.61	3.75
Merged-chr4-99033210-3	chr4	99032738	99033738	+	735.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013913, intron 2 of 6)	intron (NM_013913, intron 2 of 6)	2284.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	46.91	63.13	37.0	67.47	54.11	62.7	57.03	61.9	38.72
Merged-chr11-53411907-3	chr11	53411405	53412405	+	735.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_033565, exon 20 of 21)	exon (NM_033565, exon 20 of 21)	2708.0	NR_105885	102465554.0		NR_105885	ENSMUSG00000105908	Mir6920	mmu-mir-6920	microRNA 6920	ncRNA	6.86	3.23	6.47	8.1	5.13	9.65	6.34	3.1	1.25
Merged-chr4-129745985-2	chr4	129745488	129746488	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3685.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	58.92	72.8	77.7	78.27	34.06	32.15	110.9	142.38	56.21
Merged-chr2-173019419-1	chr2	173018919	173019919	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2483.0	NM_019547	56190.0	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	9.15	13.82	11.1	12.14	10.26	9.65	19.01	13.71	9.37
Merged-chr1-177713812-2	chr1	177713325	177714325	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-15989.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	26.31	35.48	31.45	26.99	24.72	40.19	38.02	33.6	28.73
Merged-chr1-164336086-2	chr1	164335579	164336579	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178071, intron 5 of 9)	RLTR12B|LTR|ERVK	28407.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	2.29	0.92	1.85	1.35	1.87	8.04	5.28	7.07	6.25
Merged-chr13-45889217-2	chr13	45888774	45889774	+	735.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	75717.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	56.06	41.93	46.25	46.56	40.12	24.92	25.35	10.17	8.74
Merged-chr11-100770975-1	chr11	100770475	100771475	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031871)	promoter-TSS (NM_031871)	-18.0	NM_031871	80860.0	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	16.02	16.13	12.95	14.84	24.26	36.17	36.97	22.55	13.74
Merged-chr5-142936474-2	chr5	142935991	142936991	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23864.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	11.44	11.06	24.97	13.49	13.06	19.29	17.96	14.15	14.99
Merged-chr7-3957613-2	chr7	3957123	3958123	+	735.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42122.0	NR_028115	18726.0	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	7.44	4.61	18.5	10.12	4.67	3.22	2.11	7.07	13.74
Merged-chr17-86971122-2	chr17	86970631	86971631	+	735.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	8020.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	42.9	35.02	35.15	56.68	37.79	49.83	67.6	42.89	44.34
Merged-chr8-94950250-3	chr8	94949749	94950749	+	735.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26555.0	NM_001145972	382045.0	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	4.58	1.38	1.85	2.7	4.67	1.61	2.11	4.86	3.12
Merged-chr3-108654672-3	chr3	108654174	108655174	+	735.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177771, exon 2 of 13)	5' UTR (NM_001177771, exon 2 of 13)	734.0	NM_001177770	229725.0	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	61.78	70.96	45.32	46.56	50.38	45.01	86.61	95.07	38.1
Merged-chr1-36940535-2	chr1	36940026	36941026	+	735.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018872)	promoter-TSS (NM_018872)	-999.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	169.9	182.01	105.44	205.11	161.88	141.47	222.86	259.11	149.26
Merged-chr3-87907390-2	chr3	87906902	87907902	+	735.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	552.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	69.22	69.12	59.2	82.99	76.04	81.99	89.78	65.88	68.7
Merged-chr18-58134020-2	chr18	58133506	58134506	+	735.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010181, intron 7 of 64)	L1MB8|LINE|L1	75920.0	NM_010181	14119.0	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	7.44	9.68	1.85	6.07	4.67	3.22	6.34	9.73	7.49
Merged-chr1-152539979-3	chr1	152539424	152540424	+	735.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 10 of 17)	intron (NM_016846, intron 10 of 17)	85293.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	110.41	117.5	95.27	95.81	76.97	102.88	99.28	111.87	83.06
Merged-chrX-6418326-2	chrX	6417840	6418840	+	735.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313764, intron 1 of 8)	intron (NM_001313764, intron 1 of 8)	2598.0	NM_001313764	208431.0	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	9.15	10.14	11.1	16.19	13.06	18.49	10.56	18.57	17.49
Merged-chr14-44078019-3	chr14	44077497	44078497	+	735.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-24657.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	5.15	1.84	0.0	6.07	7.93	1.61	1.06	2.21	5.0
Merged-chr4-53079035-2	chr4	53078561	53079561	+	735.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 18 of 49)	intron (NM_013454, intron 18 of 49)	67181.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	16.59	14.28	17.57	22.27	13.06	18.49	21.12	36.26	13.74
Merged-chr5-122103264-3	chr5	122102741	122103741	+	735.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010861, intron 3 of 6)	intron (NM_010861, intron 3 of 6)	2290.0	NM_010861	17906.0	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	4.0	5.07	4.62	3.37	2.33	4.82	3.17	3.1	5.0
Merged-chr17-73037108-3	chr17	73036608	73037608	+	735.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70877.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	38.33	36.4	29.6	37.11	34.06	40.99	26.4	33.16	26.23
Merged-chr6-71144033-4	chr6	71143553	71144553	+	735.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178413, intron 1 of 9)	CpG	327.0	NM_001033929	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	36.61	29.95	29.6	29.69	26.12	33.76	33.8	22.99	14.36
Merged-chr5-148711635-1	chr5	148711135	148712135	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30205.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.57	5.53	3.7	2.02	2.33	5.63	3.17	4.86	2.5
Merged-chr19-5291747-1	chr19	5291247	5292247	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030109, intron 4 of 20)	intron (NM_030109, intron 4 of 20)	3708.0	NM_030109	319322.0	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	16.59	23.96	29.6	22.27	12.13	34.56	24.29	14.59	25.61
Merged-chr15-35376673-1	chr15	35376173	35377173	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 2 of 61)	URR1A|DNA|hAT-Charlie	5127.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	4.58	10.14	7.4	8.1	13.06	11.25	14.79	13.27	9.37
Merged-chr8-125198596-2	chr8	125198093	125199093	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	144398.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	21.74	15.67	20.35	68.15	87.7	102.08	10.56	0.44	3.12
Merged-chr11-116627790-1	chr11	116627290	116628290	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	-771.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	29.17	13.82	22.2	35.76	10.26	26.53	32.74	25.65	11.24
Merged-chr15-28412387-1	chr15	28411887	28412887	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	B4A|SINE|B4	208621.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	12.59	11.98	12.95	12.14	12.13	18.49	16.9	8.84	14.99
Merged-chr5-110598911-1	chr5	110598411	110599411	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198306, intron 5 of 10)	intron (NM_198306, intron 5 of 10)	-4594.0	NM_001122639	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	4.58	2.3	1.85	13.49	1.4	4.02	2.11	2.65	3.75
Merged-chr19-5792281-1	chr19	5791781	5792781	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	3700.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	12.01	2.3	3.7	2.7	6.06	9.65	3.17	1.77	2.5
Merged-chr7-121450873-1	chr7	121450373	121451373	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	58577.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	11.44	11.06	5.55	7.42	11.66	8.84	5.28	4.86	9.99
Merged-chr10-17528489-1	chr10	17527989	17528989	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194739.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	5.15	3.69	0.0	3.37	8.4	4.82	6.34	2.21	5.0
Merged-chr19-41274694-1	chr19	41274194	41275194	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 16 of 16)	ORR1A4|LTR|ERVL-MaLR	-10690.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	8.01	2.76	18.5	4.72	7.0	8.04	4.22	14.59	19.36
Merged-chr7-38004472-1	chr7	38003972	38004972	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	15080.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	8.58	8.75	18.5	10.12	5.6	6.43	2.11	2.65	8.74
Merged-chr2-45060647-2	chr2	45060158	45061158	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-37481.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	32.04	52.07	44.4	31.04	22.39	60.28	38.02	34.49	40.59
Merged-chr12-113042824-1	chr12	113042324	113043324	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	L1MC|LINE|L1	28316.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	8.01	3.23	5.55	9.45	9.33	14.47	7.39	3.1	9.99
Merged-chr8-83140234-1	chr8	83139734	83140734	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25118.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	44.05	75.11	94.35	68.82	81.64	78.77	72.88	58.37	68.07
Merged-chr4-86676134-1	chr4	86675634	86676634	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6075.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	7.44	3.69	1.85	5.4	2.33	5.63	12.67	5.75	9.99
Merged-chr10-111336482-1	chr10	111335982	111336982	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37803.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	4.58	5.99	5.55	5.4	3.27	1.61	1.06	3.54	2.5
Merged-chr13-94965258-3	chr13	94964733	94965733	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	7.44	14.28	5.55	11.47	9.8	9.65	7.39	16.8	2.5
Merged-chr10-13087403-1	chr10	13086903	13087903	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-3385.0	NM_009538	22634.0	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	2.86	4.15	1.85	4.05	1.4	1.61	3.17	3.1	2.5
Merged-chr9-118631773-3	chr9	118631254	118632254	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 3 of 27)	Lx5c|LINE|L1	25045.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	37.18	40.09	46.25	48.58	35.45	57.07	49.64	46.87	29.35
Merged-chr1-152042254-2	chr1	152041854	152042854	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	47966.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	19.45	11.98	13.87	19.57	8.86	12.86	11.62	10.17	5.0
Merged-chr2-174932890-1	chr2	174932390	174933390	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	134879.0	NM_001085546	664987.0		NM_001085546	ENSMUSG00000078905	Gm14393	-	predicted gene 14393	protein-coding	1.14	2.76	3.7	2.7	1.4	4.82	3.17	1.33	0.0
Merged-chr6-24663795-1	chr6	24663295	24664295	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	1200.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	153.88	139.62	93.42	141.69	112.43	111.73	102.45	103.47	74.94
Merged-chr19-18615996-1	chr19	18615496	18616496	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	B3A|SINE|B2	15817.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	17.16	15.21	18.5	18.22	34.06	20.9	27.46	33.6	24.98
Merged-chr5-28072920-1	chr5	28072420	28073420	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153526, intron 1 of 4)	intron (NM_153526, intron 1 of 4)	1508.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	22.31	12.9	5.55	12.82	12.6	8.84	12.67	6.19	16.24
Merged-chr9-37656520-1	chr9	37656020	37657020	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	792.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	24.03	46.08	16.65	34.41	42.92	38.58	26.4	24.76	17.49
Merged-chr2-173703015-1	chr2	173702515	173703515	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024436)	TTS (NM_024436)	-1867.0	NR_105758	102465173.0		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	4.0	11.52	5.55	13.49	20.99	11.25	9.51	1.33	2.5
Merged-chr4-123977163-1	chr4	123976663	123977663	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	59730.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.44	2.76	0.0	2.7	1.87	2.41	3.17	0.88	2.5
Merged-chr18-3888796-1	chr18	3888296	3889296	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_A|LINE|L1	-277036.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.0	5.53	3.7	4.72	4.2	0.0	4.22	3.98	3.12
Merged-chr11-47075208-1	chr11	47074708	47075708	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	264409.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	8.01	6.91	3.7	5.4	3.73	0.0	6.34	1.77	1.87
Merged-chr4-6924936-2	chr4	6924466	6925466	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	65757.0	NM_145711	252838.0	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	4.58	4.15	2.77	4.05	5.6	4.02	2.11	6.19	2.5
Merged-chr3-126669011-1	chr3	126668511	126669511	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	72060.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.0	0.92	1.85	3.37	4.2	0.0	11.62	3.54	1.25
Merged-chr13-56176063-1	chr13	56175563	56176563	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001168615, exon 3 of 3)	3' UTR (NM_001168615, exon 3 of 3)	2822.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	34.32	31.33	38.85	26.31	29.39	52.25	30.63	13.71	27.48
Merged-chr7-122317658-1	chr7	122317158	122318158	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	ORR1E|LTR|ERVL-MaLR	28533.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	6.86	10.14	3.7	6.07	7.0	3.22	4.22	10.17	11.24
Merged-chr12-35269200-1	chr12	35268700	35269700	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74303.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	13.16	14.28	5.55	25.64	15.86	18.49	20.07	13.27	12.49
Merged-chr6-34346796-3	chr6	34346282	34347282	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7364.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	2.86	4.15	3.7	2.7	0.93	1.61	3.17	0.88	0.0
Merged-chr11-75935944-2	chr11	75935444	75936444	+	735.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10053.0	NM_001291159	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	3.43	4.61	7.4	8.1	7.93	9.65	3.17	3.54	7.49
Merged-chr18-9744627-1	chr18	9744127	9745127	+	735.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	PB1D10|SINE|Alu	36979.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.58	6.91	5.55	20.24	18.66	10.45	5.28	2.65	2.5
Merged-chr11-87757782-1	chr11	87757282	87758282	+	735.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106176)	promoter-TSS (NR_106176)	-827.0	NR_106176	102466883.0		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	82.95	86.17	47.17	53.3	41.52	84.4	80.27	93.74	53.08
Merged-chr8-60867906-4	chr8	60867330	60868330	+	734.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22563.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	23.45	8.75	5.55	22.94	14.0	12.06	27.46	15.92	7.49
Merged-chr4-3511655-3	chr4	3511180	3512180	+	734.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25410.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	61.78	70.5	28.67	91.09	76.51	77.97	134.14	154.32	126.78
Merged-chr10-43021732-3	chr10	43021262	43022262	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175407, exon 6 of 7)	exon (NM_175407, exon 6 of 7)	-30600.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	2.86	2.76	0.92	5.4	2.33	5.63	7.39	1.33	0.0
Merged-chr2-33887293-3	chr2	33886752	33887752	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175184, intron 1 of 9)	CpG	694.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	12.59	5.53	9.25	35.09	30.79	44.21	54.92	21.22	17.49
Merged-chr10-117452349-3	chr10	117451852	117452852	+	734.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4917.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	21.74	23.5	19.42	29.01	11.2	10.45	41.19	23.88	18.74
Merged-chr6-137747720-3	chr6	137747222	137748222	+	734.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011499, intron 7 of 9)	intron (NM_011499, intron 7 of 9)	-6855.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	2.86	2.76	7.4	2.02	6.06	3.22	2.11	4.42	6.87
Merged-chr11-62749682-2	chr11	62749181	62750181	+	734.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20588.0	NM_133208	170740.0	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	4.0	6.45	5.55	8.1	3.73	1.61	6.34	2.21	3.75
Merged-chr10-94223867-2	chr10	94223367	94224367	+	734.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24858.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	9.15	3.69	0.0	8.1	4.67	8.04	1.06	1.77	4.37
Merged-chr4-134761935-3	chr4	134761430	134762430	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 1 of 8)	intron (NM_145554, intron 1 of 8)	6074.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	60.64	70.04	64.75	80.97	99.83	77.97	77.1	118.06	46.22
Merged-chr12-76534422-3	chr12	76533931	76534931	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153804, intron 1 of 18)	intron (NM_153804, intron 1 of 18)	871.0	NM_153804	263406.0	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	116.13	124.87	115.62	89.74	90.5	116.55	132.02	133.53	101.8
Merged-chr6-143142476-3	chr6	143141998	143142998	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	11433.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	9.15	6.45	5.55	17.54	19.13	9.65	17.96	11.05	6.25
Merged-chr6-128134715-3	chr6	128134225	128135225	+	734.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	8853.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	29.17	37.78	31.45	42.51	22.39	23.31	54.92	38.47	23.73
Merged-chr12-84589924-3	chr12	84589438	84590438	+	734.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301427, intron 3 of 4)	CpG	20110.0	NM_001301427	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	2.29	5.07	2.77	3.37	1.87	4.82	4.22	0.44	2.5
Merged-chr13-43772037-3	chr13	43771545	43772545	+	734.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13067.0	NM_009856	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	8.58	7.83	7.4	23.62	10.73	4.82	16.9	10.61	7.49
Merged-chr5-31200802-2	chr5	31200313	31201313	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175311, exon 3 of 4)	exon (NM_175311, exon 3 of 4)	1229.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	205.94	184.77	90.65	174.08	143.22	121.37	167.93	185.71	88.06
Merged-chr8-84210592-2	chr8	84210083	84211083	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172503)	TTS (NM_172503)	-1676.0	NR_037294	100526528.0		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	38.33	15.67	5.55	16.19	7.0	8.04	8.45	7.07	11.24
Merged-chr5-101999703-2	chr5	101999208	102000208	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	70213.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	64.07	82.48	65.67	124.82	77.44	71.54	84.49	89.32	38.72
Merged-chr6-148615624-2	chr6	148615107	148616107	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1298.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	2.86	4.15	0.0	6.07	5.13	3.22	3.17	2.21	3.12
Merged-chr1-106376486-2	chr1	106375981	106376981	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 13 of 16)	intron (NM_133821, intron 13 of 16)	170150.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	21.74	17.05	24.05	42.51	27.06	32.15	30.63	19.01	18.11
Merged-chr16-32866878-3	chr16	32866368	32867368	+	734.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	1498.0	NM_001200038	100502698.0	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	35.47	29.03	36.07	31.04	23.79	30.54	29.57	32.28	34.97
Merged-chr7-35067983-2	chr7	35067482	35068482	+	734.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11416.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	33.18	29.49	2.77	40.48	12.13	20.09	16.9	11.94	31.23
Merged-chr18-9444960-2	chr18	9444448	9445448	+	734.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026484, intron 1 of 9)	MTC|LTR|ERVL-MaLR	5206.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	1.72	4.61	5.55	5.4	3.27	1.61	4.22	7.52	1.25
Merged-chr4-108454892-3	chr4	108454408	108455408	+	734.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4518.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	68.07	69.58	26.82	60.72	48.98	40.99	71.82	91.09	41.22
Merged-chr7-128298012-3	chr7	128297523	128298523	+	734.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145590, exon 1 of 13)	exon (NM_145590, exon 1 of 13)	108.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	29.75	35.02	20.35	41.16	38.25	32.15	44.36	41.12	19.36
Merged-chr19-42046039-3	chr19	42045510	42046510	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020033)	TTS (NM_020033)	159.0	NM_026152	67432.0	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	24.6	17.97	24.05	20.24	22.39	16.88	14.79	12.38	11.24
Merged-chr1-77168978-1	chr1	77168478	77169478	+	734.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	327790.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	15.45	8.29	9.25	7.42	6.06	8.84	4.22	4.42	1.25
Merged-chr8-123361460-3	chr8	123360940	123361940	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 10 of 14)	intron (NM_172287, intron 10 of 14)	-12271.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	8.01	0.92	1.85	6.07	5.13	2.41	7.39	5.75	1.87
Merged-chr6-34290313-1	chr6	34289813	34290813	+	734.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27130.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	2.29	2.76	7.4	2.02	6.53	0.0	5.28	4.86	14.99
Merged-chr5-147751814-3	chr5	147751297	147752297	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-25809.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.29	1.38	1.85	2.7	0.93	4.82	0.0	3.1	2.5
Merged-chr4-12474375-1	chr4	12473875	12474875	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-302360.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	14.87	12.9	0.92	4.05	1.4	0.0	2.11	0.88	0.0
Merged-chr5-124021349-3	chr5	124020829	124021829	+	734.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	10931.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	60.64	48.38	59.2	78.94	67.64	70.73	110.9	86.22	27.48
Merged-chr11-45754036-2	chr11	45753531	45754531	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54052.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	15.45	5.53	0.0	15.52	4.67	4.02	11.62	8.4	1.25
Merged-chr1-39650330-2	chr1	39649829	39650829	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170597, intron 1 of 3)	intron (NM_170597, intron 1 of 3)	853.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	4.0	2.76	0.0	4.05	3.73	7.23	6.34	1.33	5.0
Merged-chr12-100169405-2	chr12	100168903	100169903	+	734.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9750.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	33.75	29.49	19.42	51.95	34.52	28.94	41.19	47.31	30.6
Merged-chr13-30986212-4	chr13	30985695	30986695	+	734.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12148.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	51.48	109.67	56.42	72.19	86.77	77.16	106.67	113.19	60.58
Merged-chr1-88695275-3	chr1	88694771	88695771	+	734.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6920.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	15.45	18.89	12.95	23.62	14.0	22.51	15.84	14.59	11.24
Merged-chr12-87299922-3	chr12	87299447	87300447	+	734.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-242.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	4.58	0.92	1.85	10.12	1.87	4.82	5.28	0.88	1.25
Merged-chr7-16229987-3	chr7	16229512	16230512	+	734.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7980.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	53.77	77.41	84.17	69.5	60.18	98.87	41.19	70.3	28.73
Merged-chr1-136633824-3	chr1	136633314	136634314	+	734.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8913.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	102.4	87.55	68.45	87.71	103.1	83.59	98.23	131.77	54.96
Merged-chr12-12270150-3	chr12	12269643	12270643	+	734.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	MTD|LTR|ERVL-MaLR	8004.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	231.11	302.74	140.59	213.21	242.12	199.34	178.5	214.45	101.17
Merged-chr6-134171068-2	chr6	134170578	134171578	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	C-rich|Low_complexity|Low_complexity	135378.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	35.47	26.73	47.17	30.36	16.79	35.37	47.53	30.51	14.99
Merged-chr10-121310967-2	chr10	121310458	121311458	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029057, exon 1 of 12)	5' UTR (NM_029057, exon 1 of 12)	438.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	6.29	0.46	0.92	2.7	2.33	1.61	1.06	3.1	0.0
Merged-chr10-60289441-2	chr10	60288964	60289964	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	5003.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	39.47	34.1	21.27	35.09	39.19	42.6	60.2	48.64	34.97
Merged-chr1-14823858-2	chr1	14823365	14824365	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67899.0	NM_010827	17681.0	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	17.73	28.57	9.25	29.01	20.53	28.94	19.01	30.95	16.24
Merged-chr5-108694737-2	chr5	108694245	108695245	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054071, intron 1 of 6)	CpG	516.0	NM_054071	116701.0	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	14.87	2.76	5.55	25.64	4.2	8.04	8.45	1.77	0.0
Merged-chr6-145075851-1	chr6	145075351	145076351	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	306.0	NM_007532	12035.0	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	3.43	2.3	7.4	5.4	0.93	0.0	2.11	2.21	1.25
Merged-chr2-58933533-1	chr2	58933033	58934033	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	178349.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	13.73	11.98	7.4	13.49	17.73	11.25	3.17	12.82	7.49
Merged-chr4-83271612-1	chr4	83271112	83272112	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	URR1A|DNA|hAT-Charlie	52577.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	12.01	15.67	12.02	18.89	10.73	10.45	10.56	7.07	9.99
Merged-chrX-20387181-1	chrX	20386681	20387681	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290643, intron 3 of 5)	L1MD3|LINE|L1	22700.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	12.01	25.34	29.6	13.49	13.06	14.47	21.12	18.13	8.74
Merged-chr17-29099176-1	chr17	29098676	29099676	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111099, intron 2 of 2)	B3A|SINE|B2	5407.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	1.72	1.38	1.85	1.35	0.93	9.65	2.11	0.0	6.25
Merged-chr5-121660123-1	chr5	121659623	121660623	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028227)	promoter-TSS (NM_028227)	387.0	NM_028037	71985.0	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	48.62	49.76	22.2	96.48	70.91	49.03	74.99	75.17	20.61
Merged-chr10-80175648-1	chr10	80175148	80176148	+	734.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027207)	TTS (NM_027207)	2704.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	5.15	6.91	1.85	4.05	3.27	0.0	4.22	7.07	1.25
Merged-chr6-134433472-3	chr6	134432983	134433983	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	19055.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	15.45	14.75	11.1	15.52	8.4	9.65	19.01	15.92	3.75
Merged-chr2-129369118-2	chr2	129368606	129369606	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015474)	promoter-TSS (NR_015474)	-796.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	18.31	23.5	20.35	31.71	22.39	37.78	29.57	30.07	35.6
Merged-chr8-124007717-3	chr8	124007227	124008227	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357315, intron 3 of 4)	RMER16|LTR|ERVK	13329.0	NM_001357315	102162.0	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	21.74	16.59	31.45	14.17	17.73	39.39	17.96	19.9	38.72
Merged-chr1-106957845-1	chr1	106957345	106958345	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001199213)	TTS (NM_001199213)	18888.0	NM_001199213	71869.0	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	2.29	4.15	0.0	2.7	1.4	3.22	4.22	5.75	7.49
Merged-chr2-142703115-2	chr2	142702619	142703619	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 22 of 26)	L1MA4A|LINE|L1	198345.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	8.01	8.29	9.25	5.4	7.0	4.82	10.56	10.17	5.0
Merged-chr7-112233564-2	chr7	112233098	112234098	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	7762.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	5.15	10.6	20.35	5.4	7.46	5.63	2.11	1.77	9.99
Merged-chr9-5334540-2	chr9	5334046	5335046	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-10930.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.0	2.3	5.55	3.37	5.6	4.02	0.0	2.65	3.12
Merged-chr2-109431042-1	chr2	109430542	109431542	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	150304.0	NM_139303	228421.0	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	1.72	2.3	1.85	1.35	0.93	0.8	2.11	2.21	4.37
Merged-chr9-104306953-2	chr9	104306454	104307454	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019807, exon 9 of 11)	exon (NM_019807, exon 9 of 11)	30768.0	NM_019807	56318.0	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	5.15	1.38	7.4	2.02	3.27	4.82	1.06	2.21	2.5
Merged-chr7-107519566-2	chr7	107519050	107520050	+	734.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021889, intron 6 of 6)	intron (NM_021889, intron 6 of 6)	-47883.0	NM_172907	244198.0	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	2.86	2.3	6.47	2.02	6.06	4.02	0.0	1.77	1.25
Merged-chr2-152724141-2	chr2	152723635	152724635	+	734.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12116.0	NM_010495	15901.0	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	2.29	2.76	0.0	1.35	1.87	3.22	3.17	3.1	0.0
Merged-chr7-80919097-3	chr7	80918594	80919594	+	734.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019951, intron 4 of 5)	intron (NM_019951, intron 4 of 5)	-14032.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	41.19	23.04	11.1	33.74	30.79	30.54	46.47	45.54	19.98
Merged-chr3-130761131-2	chr3	130760559	130761559	+	734.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30661.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	9.72	9.22	7.4	12.14	7.46	8.04	7.39	1.33	8.74
Merged-chrX-6854361-2	chrX	6853862	6854862	+	734.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19122.0	NM_177914	331374.0	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	1.14	1.38	3.7	3.37	6.06	4.82	1.06	1.77	5.0
Merged-chr12-71808224-2	chr12	71807721	71808721	+	734.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22847.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	24.6	27.19	11.1	40.48	54.11	34.56	48.58	36.26	27.48
Merged-chr17-48278548-2	chr17	48278032	48279032	+	734.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	14237.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	24.03	19.81	23.12	26.99	17.26	36.17	28.52	13.71	23.73
Merged-chr11-106789939-2	chr11	106789460	106790460	+	734.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355677)	promoter-TSS (NM_001355677)	708.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	60.64	51.61	26.82	79.62	52.72	37.78	62.31	64.11	33.1
Merged-chr18-38239398-2	chr18	38238898	38239898	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027904, intron 1 of 1)	CpG	10800.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	5.15	5.53	3.7	7.42	2.8	1.61	4.22	4.42	5.0
Merged-chr12-75694621-2	chr12	75694124	75695124	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-25087.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	24.6	16.59	5.55	74.89	34.99	32.96	54.92	27.41	26.23
Merged-chr7-67672853-2	chr7	67672334	67673334	+	734.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168477)	TTS (NM_001168477)	25424.0	NM_001360653	67009.0	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	3.43	3.23	1.85	3.37	0.93	3.22	3.17	0.44	4.37
Merged-chr16-4939556-1	chr16	4939056	4940056	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037666)	promoter-TSS (NR_037666)	29.0	NR_037666	100503704.0	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	61.78	50.69	67.52	84.34	88.17	74.75	83.44	86.66	54.96
Merged-chr16-4840454-3	chr16	4839969	4840969	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030192, intron 1 of 15)	intron (NM_030192, intron 1 of 15)	5053.0	NM_030192	78809.0	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	58.92	53.91	37.0	79.62	77.44	75.56	79.21	83.57	33.1
Merged-chr7-45481528-1	chr7	45481028	45482028	+	734.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027903, intron 4 of 6)	intron (NM_027903, intron 4 of 6)	-4734.0	NM_001290996	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	5.72	2.76	2.77	0.0	2.33	3.22	3.17	0.88	6.87
Merged-chr13-30981844-1	chr13	30981344	30982344	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7797.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	4.0	4.61	0.0	2.7	3.27	4.82	2.11	2.21	5.0
Merged-chr6-134997095-3	chr6	134996571	134997571	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14541.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	2.86	3.23	1.85	3.37	1.87	0.0	3.17	0.44	5.62
Merged-chr4-138041383-1	chr4	138040883	138041883	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	43558.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	103.54	86.63	65.67	91.09	67.64	86.81	87.66	106.56	54.33
Merged-chr6-84032786-3	chr6	84032297	84033297	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	RLTR19-int|LTR|ERVK	13411.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	24.03	27.19	42.55	29.01	20.53	22.51	33.8	34.93	24.98
Merged-chr1-45919181-1	chr1	45918681	45919681	+	734.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 3 of 7)	intron (NM_016917, intron 3 of 7)	6413.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	64.64	94.92	35.15	87.04	69.04	73.95	101.39	124.69	40.59
Merged-chr14-63413696-3	chr14	63413190	63414190	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	3497.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	31.46	31.33	11.1	25.64	23.79	17.68	28.52	16.8	15.61
Merged-chr12-35076161-3	chr12	35075662	35076662	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	28973.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	21.17	11.98	4.62	24.96	14.46	9.65	102.45	111.43	42.47
Merged-chr3-109196360-3	chr3	109195858	109196858	+	734.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73209.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	6.86	5.07	3.7	8.1	5.13	0.0	4.22	3.1	5.62
Merged-chr11-120597829-4	chr11	120597254	120598254	+	734.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025389)	promoter-TSS (NM_025389)	611.0	NM_011568	21681.0	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	Aly|Ref1|Ref1-I|Refbp1|Tho4|Thoc4	Aly/REF export factor	protein-coding	263.14	152.06	154.47	284.06	115.69	98.06	194.34	84.01	67.45
Merged-chr10-122562146-2	chr10	122561644	122562644	+	734.3000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7747.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	36.04	52.07	46.25	72.19	66.24	84.4	116.18	142.38	64.95
Merged-chr10-130129186-3	chr10	130128688	130129688	+	734.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2133.0	NM_146674	258669.0	Mm.377631	NM_146674	ENSMUSG00000095804	Olfr824	MOR210-3	olfactory receptor 824	protein-coding	2.29	8.29	1.85	6.75	7.46	8.04	7.39	8.4	2.5
Merged-chr12-80895344-3	chr12	80894821	80895821	+	734.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29126.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	4.58	2.76	1.85	2.7	2.8	2.41	3.17	3.1	2.5
Merged-chr9-106226381-3	chr9	106225875	106226875	+	734.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031178, exon 2 of 2)	exon (NM_031178, exon 2 of 2)	3777.0	NM_031178	81897.0	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	13.73	16.13	9.25	25.64	14.46	27.33	31.69	20.78	16.24
Merged-chr3-52103853-3	chr3	52103326	52104326	+	734.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001004176, exon 1 of 5)	exon (NM_001004176, exon 1 of 5)	1180.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	64.07	52.99	46.25	58.03	47.12	50.64	69.71	52.18	36.85
Merged-chr18-5123864-3	chr18	5123353	5124353	+	734.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41878.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	28.6	48.38	42.55	53.3	41.52	71.54	48.58	34.49	42.47
Merged-chr2-91091628-2	chr2	91091125	91092125	+	734.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5053.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	25.17	30.41	33.3	31.04	25.66	43.4	48.58	43.33	28.1
Merged-chrUn_JH584304-81261-1	chrUn_JH584304	80761	81761	+	734.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21572.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	3.17	2.65	0.0
Merged-chr10-20753079-2	chr10	20752583	20753583	+	734.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28005.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.58	5.07	1.85	6.07	5.13	3.22	7.39	1.33	3.12
Merged-chr13-111807275-2	chr13	111806807	111807807	+	734.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	1686.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	169.9	237.3	128.57	169.35	154.88	151.11	203.84	254.25	109.92
Merged-chr13-105306151-2	chr13	105305669	105306669	+	734.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11684.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	9.72	11.06	5.55	10.12	6.53	14.47	11.62	7.07	10.62
Merged-chr11-97700420-3	chr11	97699863	97700863	+	734.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163307)	promoter-TSS (NM_001163307)	134.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	18.31	13.36	12.95	22.27	14.0	23.31	27.46	11.94	16.86
Merged-chr7-79786409-3	chr7	79785842	79786842	+	734.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001037927)	TTS (NM_001037927)	7248.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	2.29	5.99	3.7	4.05	1.87	0.0	7.39	1.77	5.0
Merged-chr9-104243997-3	chr9	104243488	104244488	+	734.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359740, intron 2 of 56)	intron (NM_001359740, intron 2 of 56)	18942.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	22.31	17.05	12.95	10.12	12.13	25.72	28.52	14.15	16.24
Merged-chr2-163712845-2	chr2	163712388	163713388	+	734.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039390, intron 3 of 4)	intron (NM_001039390, intron 3 of 4)	18851.0	NM_011106	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	27.46	43.31	38.85	35.76	44.78	49.03	33.8	34.93	19.98
Merged-chr17-85023715-2	chr17	85023208	85024208	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159497, exon 6 of 6)	exon (NM_001159497, exon 6 of 6)	-4639.0	NM_009205	20532.0	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	8.58	1.38	3.7	3.37	0.93	0.0	3.17	3.1	3.12
Merged-chr14-60910953-2	chr14	60910456	60911456	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	126390.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	15.45	17.97	24.05	14.84	13.53	18.49	23.24	26.09	47.46
Merged-chr9-47644467-2	chr9	47643969	47644969	+	734.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	114117.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	33.75	46.08	43.47	45.21	27.99	51.44	57.03	29.18	34.35
Merged-chr1-157416783-3	chr1	157416294	157417294	+	734.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-4199.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	21.17	11.52	15.72	26.99	24.26	34.56	20.07	12.38	16.24
Merged-chr14-54476092-2	chr14	54475588	54476588	+	734.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080726)	promoter-TSS (NM_080726)	-12.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	6.86	5.99	1.85	16.87	9.8	3.22	7.39	3.54	5.0
Merged-chr2-128753618-2	chr2	128753096	128754096	+	734.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008587, intron 6 of 18)	ID_B1|SINE|B4	54681.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	36.04	35.02	24.05	41.16	23.79	34.56	55.98	55.71	31.85
Merged-chr13-100849317-3	chr13	100848825	100849825	+	734.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-15898.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	12.59	6.45	9.25	33.74	12.13	27.33	40.14	30.95	14.36
Merged-chr2-72464537-3	chr2	72464067	72465067	+	734.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-11652.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	12.01	10.14	9.25	18.22	6.53	8.84	26.4	14.59	13.74
Merged-chr10-88351875-2	chr10	88351373	88352373	+	734.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 1 of 6)	intron (NM_027878, intron 1 of 6)	5202.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	20.02	17.51	19.42	19.57	15.86	19.29	25.35	22.55	14.99
Merged-chr5-97320306-3	chr5	97319802	97320802	+	734.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	72028.0	NM_001033191	97243.0	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	7.44	9.22	13.87	7.42	7.46	9.65	3.17	4.42	12.49
Merged-chr10-30408879-3	chr10	30408381	30409381	+	734.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191819.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	8.01	5.99	3.7	7.42	4.67	12.06	7.39	1.77	1.25
Merged-chr16-38603592-1	chr16	38603092	38604092	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020260, exon 12 of 12)	exon (NM_020260, exon 12 of 12)	40778.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	1.14	4.61	4.62	1.35	4.67	1.61	3.17	0.88	1.25
Merged-chr16-19973073-1	chr16	19972573	19973573	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	intron (NM_183390, intron 1 of 6)	9976.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	23.45	19.81	27.75	13.49	17.73	27.33	24.29	30.51	31.23
Merged-chr15-79441144-1	chr15	79440644	79441644	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	674.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	72.65	49.3	29.6	89.74	54.11	34.56	70.76	35.82	25.61
Merged-chr2-168593172-1	chr2	168592672	168593672	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291169, intron 1 of 10)	intron (NM_001291169, intron 1 of 10)	-2807.0	NM_001136073	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	1.14	3.23	1.85	2.02	3.27	0.0	3.17	4.86	2.5
Merged-chr14-57701998-3	chr14	57701500	57702500	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015771, intron 3 of 7)	intron (NM_015771, intron 3 of 7)	32418.0	NM_153382	50523.0	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.0	3.23	1.85	4.72	4.2	5.63	9.51	3.98	5.62
Merged-chr16-95710294-2	chr16	95709798	95710798	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011809, intron 3 of 9)	intron (NM_011809, intron 3 of 9)	7891.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	14.3	7.83	7.4	10.8	6.53	8.04	7.39	3.54	8.12
Merged-chr10-81140803-2	chr10	81140299	81141299	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010731, intron 1 of 2)	intron (NM_010731, intron 1 of 2)	4528.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	19.45	20.27	27.75	20.92	17.73	38.58	28.52	19.9	36.85
Merged-chr10-42464401-1	chr10	42463901	42464901	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359297, intron 1 of 11)	L2c|LINE|L2	14164.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	2.29	5.07	2.77	5.4	4.67	1.61	5.28	1.77	6.87
Merged-chr12-12318343-1	chr12	12317843	12318843	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	56204.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	16.02	19.35	35.15	8.1	7.93	8.84	12.67	10.17	5.0
Merged-chr11-21237925-2	chr11	21237412	21238412	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1120.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	77.8	142.84	58.27	59.38	73.71	76.36	127.8	179.96	66.2
Merged-chr6-71437120-1	chr6	71436620	71437620	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 1 of 9)	intron (NM_001355745, intron 1 of 9)	3517.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	10.3	18.43	34.22	14.84	16.33	16.88	19.01	15.92	21.23
Merged-chrX-158234296-1	chrX	158233796	158234796	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-191099.0	NM_177751	245684.0	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	3.43	2.76	2.77	2.02	0.47	4.82	5.28	1.77	8.74
Merged-chr10-91185135-1	chr10	91184635	91185635	+	734.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-13516.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	6.29	5.53	1.85	7.42	1.4	5.63	6.34	6.19	2.5
Merged-chr6-100150978-1	chr6	100150478	100151478	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	136380.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	1.72	3.69	0.0	1.35	5.6	0.0	1.06	4.42	6.25
Merged-chr8-71591403-1	chr8	71590903	71591903	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025396)	promoter-TSS (NM_025396)	-781.0	NM_025396	66171.0	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	53.77	58.06	53.65	47.9	64.84	62.7	66.54	79.59	31.23
Merged-chr13-36116867-1	chr13	36116367	36117367	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024274)	promoter-TSS (NM_024274)	490.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	10.3	14.75	15.72	16.19	23.33	10.45	24.29	15.92	13.74
Merged-chrX-13306397-2	chrX	13305893	13306893	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD2|LINE|L1	25371.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	13.73	11.06	5.55	20.92	15.86	31.35	16.9	18.13	14.99
Merged-chr19-41278683-2	chr19	41278185	41279185	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 16 of 16)	intron (NM_031376, intron 16 of 16)	-14681.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	14.3	6.91	12.02	12.14	6.53	8.04	7.39	10.17	9.37
Merged-chr7-30992356-1	chr7	30991856	30992856	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	10435.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.58	5.07	1.85	5.4	6.06	6.43	3.17	3.54	3.75
Merged-chr11-95584203-1	chr11	95583703	95584703	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033217, intron 1 of 5)	intron (NM_033217, intron 1 of 5)	3495.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	4.58	1.38	1.85	2.7	0.93	2.41	3.17	0.44	0.0
Merged-chr6-53455657-1	chr6	53455157	53456157	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-117717.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	3.43	1.84	3.7	6.75	3.73	0.8	4.22	0.88	3.75
Merged-chr6-65141092-2	chr6	65140584	65141584	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	3646.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	80.66	107.36	48.1	95.14	83.51	56.27	77.1	84.45	45.59
Merged-chr3-52199532-1	chr3	52199032	52200032	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68805.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	17.16	8.75	18.5	14.17	11.66	16.08	12.67	13.71	11.87
Merged-chr8-90930342-1	chr8	90929842	90930842	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-1907.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.58	6.45	11.1	8.1	7.46	9.65	6.34	4.86	1.87
Merged-chrX-37126858-2	chrX	37126355	37127355	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025937)	promoter-TSS (NM_025937)	92.0	NM_025937	67050.0	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	55.49	57.14	40.7	37.11	69.04	81.18	49.64	61.02	37.47
Merged-chr19-29237241-1	chr19	29236741	29237741	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14562.0	NM_001048177	16452.0	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	4.0	2.3	11.1	2.7	2.8	2.41	4.22	5.31	0.0
Merged-chr4-43726794-1	chr4	43726294	43727294	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027511)	promoter-TSS (NM_027511)	-404.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.0	4.15	3.7	8.1	4.2	6.43	2.11	3.1	2.5
Merged-chr14-17933762-1	chr14	17933262	17934262	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-47882.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	2.86	0.92	5.55	17.54	7.0	14.47	2.11	1.77	1.87
Merged-chr8-125487156-1	chr8	125486656	125487656	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	5677.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.15	6.45	7.4	9.45	7.0	11.25	5.28	3.98	6.87
Merged-chr13-56712366-2	chr13	56711876	56712876	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	8708.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	49.2	31.79	16.65	58.7	34.99	16.08	54.92	79.59	24.36
Merged-chr15-68394940-1	chr15	68394440	68395440	+	734.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53651.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	4.58	3.23	0.0	4.72	2.8	1.61	6.34	2.21	2.5
Merged-chr5-89051812-1	chr5	89051312	89052312	+	734.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359212, intron 3 of 22)	intron (NM_001359212, intron 3 of 22)	23846.0	NM_001359213	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.0	5.53	1.85	2.7	2.33	6.43	6.34	0.88	2.5
Merged-chr14-16564046-1	chr14	16563546	16564546	+	734.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	MTD|LTR|ERVL-MaLR	11430.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	6.29	3.69	5.55	2.02	3.73	4.82	5.28	0.44	1.25
Merged-chr17-74811049-3	chr17	74810540	74811540	+	733.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 13 of 19)	intron (NM_152817, intron 13 of 19)	93290.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.72	2.3	1.85	2.7	3.73	0.0	5.28	2.21	0.0
Merged-chr2-71939123-2	chr2	71938598	71939598	+	733.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42117.0	NM_001204167	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	7.44	6.91	5.55	12.14	14.0	8.04	27.46	23.43	14.99
Merged-chr2-160356390-3	chr2	160355897	160356897	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	10668.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	7.44	5.53	3.7	9.45	5.13	11.25	2.11	1.33	6.25
Merged-chr2-127251856-3	chr2	127251347	127252347	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175145, intron 2 of 3)	intron (NM_175145, intron 2 of 3)	3872.0	NM_175145	69470.0	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	46.91	25.8	30.52	39.13	18.66	40.19	23.24	22.99	9.99
Merged-chr2-91986261-3	chr2	91985776	91986776	+	733.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011957, exon 10 of 12)	exon (NM_011957, exon 10 of 12)	-22713.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	13.16	6.45	1.85	13.49	3.27	3.22	13.73	13.71	5.0
Merged-chr4-58986897-3	chr4	58986410	58987410	+	733.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	168.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	5.72	13.36	3.7	10.12	13.53	21.7	5.28	5.75	1.25
Merged-chr4-133056714-3	chr4	133056176	133057176	+	733.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146155, intron 3 of 6)	intron (NM_146155, intron 3 of 6)	45170.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	9.15	5.99	11.1	13.49	3.73	12.06	9.51	7.96	15.61
Merged-chr7-98383045-2	chr7	98382542	98383542	+	733.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21714.0	NM_001168539	244152.0	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	10.87	3.23	2.77	10.8	2.8	0.0	8.45	4.86	2.5
Merged-chr7-120871537-2	chr7	120871034	120872034	+	733.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267710, intron 2 of 17)	MLT1A|LTR|ERVL-MaLR	20345.0	NM_001267711	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	65.79	44.7	40.7	31.04	19.59	19.29	12.67	21.22	9.99
Merged-chr12-57237223-3	chr12	57236720	57237720	+	733.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	Lx9|LINE|L1	6795.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	8.58	11.06	12.95	10.8	7.0	10.45	7.39	11.05	5.0
Merged-chr3-95957576-3	chr3	95957069	95958069	+	733.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27941.0	NR_045872	668224.0	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	25.17	17.05	24.97	16.19	18.19	25.72	27.46	27.86	16.86
Merged-chrX-103616295-2	chrX	103615806	103616806	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028380, intron 1 of 10)	IMPB_01|Satellite|Satellite	7448.0	NR_028381	78878.0	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	94.39	117.5	81.4	124.82	139.49	81.18	83.44	137.07	74.32
Merged-chr6-87742230-2	chr6	87741734	87742734	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	MTD|LTR|ERVL-MaLR	11365.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	14.3	10.6	12.95	31.71	10.26	4.02	24.29	14.15	10.62
Merged-chr11-50099068-2	chr11	50098578	50099578	+	733.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	29376.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	14.3	21.2	14.8	20.92	20.06	35.37	16.9	11.94	20.61
Merged-chr4-150546892-2	chr4	150546394	150547394	+	733.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	105280.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	17.16	22.58	24.97	20.24	25.19	11.25	19.01	14.59	8.12
Merged-chr6-32328269-1	chr6	32327769	32328769	+	733.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-182872.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.0	3.23	7.4	6.75	1.87	6.43	2.11	0.88	3.75
Merged-chr19-5407337-2	chr19	5406834	5407834	+	733.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027938, intron 1 of 3)	B3|SINE|B2	519.0	NR_027938	74931.0	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	78.94	49.3	58.27	58.03	43.39	59.48	494.29	673.42	284.78
Merged-chr4-46344439-3	chr4	46343944	46344944	+	733.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183298, exon 1 of 1)	exon (NM_183298, exon 1 of 1)	250.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	4.58	0.0	0.0	1.35	1.4	10.45	5.28	0.0	2.5
Merged-chr11-86908478-3	chr11	86907996	86908996	+	733.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur2|LINE|L1	85266.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	56.06	24.88	27.75	31.71	30.79	42.6	46.47	32.72	26.85
Merged-chr7-81763681-3	chr7	81763173	81764173	+	733.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025997, intron 1 of 2)	B3A|SINE|B2	720.0	NM_025997	67148.0	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	41.76	33.18	22.2	24.96	45.72	22.51	44.36	32.28	16.86
Merged-chr14-33158480-3	chr14	33157967	33158967	+	733.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146022, intron 2 of 58)	intron (NM_001146022, intron 2 of 58)	26599.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	17.73	11.52	20.35	14.17	7.0	8.04	23.24	11.94	11.24
Merged-chr9-35115576-2	chr9	35115094	35116094	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-1134.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	51.48	59.44	54.57	60.05	37.32	51.44	89.78	47.75	58.71
Merged-chr11-116142777-2	chr11	116142255	116143255	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172571, exon 31 of 31)	3' UTR (NM_172571, exon 31 of 31)	-3887.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	25.17	14.28	15.72	39.13	23.33	24.11	12.67	19.01	5.0
Merged-chr11-79398591-2	chr11	79398082	79399082	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010897, intron 5 of 57)	Lx8|LINE|L1	58690.0	NM_010897	18015.0	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	20.59	9.22	7.4	2.02	4.2	7.23	17.96	15.03	8.12
Merged-chrX-143321552-2	chrX	143321049	143322049	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358592, intron 6 of 11)	intron (NM_001358592, intron 6 of 11)	72713.0	NM_001358592	83453.0	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	2.86	3.23	0.0	4.72	2.8	4.82	7.39	2.21	5.0
Merged-chrX-99092870-3	chrX	99092364	99093364	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-43197.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	4.58	1.38	0.0	2.7	3.27	2.41	4.22	2.21	3.75
Merged-chr10-80596280-3	chr10	80595770	80596770	+	733.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5929.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	28.03	31.79	45.32	27.66	19.59	50.64	39.08	36.7	50.59
Merged-chr13-94164528-1	chr13	94164028	94165028	+	733.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	106732.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	20.59	7.37	9.25	12.82	11.2	11.25	14.79	5.31	0.0
Merged-chr10-127292206-3	chr10	127291694	127292694	+	733.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290183, intron 1 of 2)	intron (NM_001290183, intron 1 of 2)	1401.0	NM_001290183	13198.0	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	29.17	25.8	20.35	29.69	17.73	17.68	38.02	30.07	15.61
Merged-chr6-116108141-3	chr6	116107633	116108633	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	85241.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	42.33	43.31	36.07	45.21	33.12	24.92	43.3	31.84	31.23
Merged-chr9-118506942-3	chr9	118506421	118507421	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018748, intron 1 of 23)	CpG	603.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	49.77	46.54	27.75	55.33	55.05	32.15	64.43	40.68	31.85
Merged-chr16-17686819-1	chr16	17686319	17687319	+	733.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358404, intron 2 of 16)	intron (NM_001358404, intron 2 of 16)	36081.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	14.3	13.82	25.9	13.49	9.8	24.92	10.56	10.61	7.49
Merged-chr2-102757364-3	chr2	102756876	102757876	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-10616.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	36.61	44.24	60.12	38.46	34.06	28.94	40.14	43.33	36.22
Merged-chr6-72101053-3	chr6	72100470	72101470	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	3362.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	66.93	63.13	67.52	93.11	79.77	84.4	127.8	93.3	33.1
Merged-chr2-167537642-1	chr2	167537142	167538142	+	733.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011427)	promoter-TSS (NM_011427)	-553.0	NM_011427	20613.0	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	22.88	3.69	8.32	9.45	7.0	2.41	10.56	3.98	3.75
Merged-chr12-118847131-3	chr12	118846636	118847636	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177082, intron 1 of 2)	CpG	807.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.43	4.15	7.4	4.05	2.8	0.0	4.22	3.54	0.0
Merged-chr15-41657272-2	chr15	41656766	41657766	+	733.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-131729.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.43	1.38	2.77	3.37	5.13	0.0	3.17	3.54	1.25
Merged-chr15-68066854-2	chr15	68066352	68067352	+	733.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	192004.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	16.02	8.75	7.4	14.17	7.46	10.45	10.56	9.73	4.37
Merged-chr17-33902654-2	chr17	33902122	33903122	+	733.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2513.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	30.89	20.74	28.67	30.36	31.72	57.07	45.42	47.75	55.58
Merged-chr18-75392538-2	chr18	75392050	75393050	+	733.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	25185.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	3.43	5.99	5.55	6.75	2.33	4.82	6.34	3.98	8.12
Merged-chr6-52401638-3	chr6	52401144	52402144	+	733.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86812.0	NR_038163	70593.0	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	12.01	5.99	2.77	16.87	7.0	8.04	8.45	1.77	1.25
Merged-chr9-15685390-3	chr9	15684891	15685891	+	733.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24347.0	NM_001357566	234967.0	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	1.14	1.84	1.85	0.67	4.67	1.61	5.28	4.42	0.0
Merged-chr10-69218647-3	chr10	69218119	69219119	+	733.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252638, intron 2 of 11)	intron (NM_001252638, intron 2 of 11)	5425.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	46.34	57.14	63.82	66.12	36.39	52.25	90.83	69.42	44.34
Merged-chr8-109691847-3	chr8	109691350	109692350	+	733.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 1 of 10)	RSINE1|SINE|B4	1444.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	30.32	26.73	23.12	26.31	22.86	14.47	39.08	24.76	20.61
Merged-chr7-19088982-3	chr7	19088461	19089461	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001190491, exon 9 of 13)	exon (NM_001190491, exon 9 of 13)	2133.0	NR_037282	100526504.0		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	2.86	8.75	12.95	8.77	3.27	3.22	15.84	11.94	22.48
Merged-chr11-100712388-3	chr11	100711851	100712851	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020004, exon 1 of 18)	exon (NM_020004, exon 1 of 18)	116.0	NM_001038010	14534.0	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	13.73	11.52	11.1	21.59	12.6	39.39	28.52	14.15	3.75
Merged-chr2-145830162-3	chr2	145829641	145830641	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	ID4|SINE|ID	44025.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	55.49	71.42	62.9	68.15	58.31	53.85	74.99	85.78	49.34
Merged-chr3-83812167-3	chr3	83811663	83812663	+	733.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29445.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	23.45	30.41	20.35	37.78	34.06	29.74	39.08	30.95	17.49
Merged-chr10-8881097-2	chr10	8880590	8881590	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	4980.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	138.44	127.64	162.79	157.21	117.09	129.41	136.25	179.96	87.43
Merged-chr18-66073199-3	chr18	66072710	66073710	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178793, intron 6 of 10)	intron (NM_178793, intron 6 of 10)	-70575.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	10.87	17.51	18.5	10.12	6.06	15.27	16.9	21.22	11.24
Merged-chr6-145860554-1	chr6	145860054	145861054	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_024469, exon 5 of 5)	3' UTR (NM_024469, exon 5 of 5)	4866.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.43	4.61	0.0	10.8	10.73	3.22	2.11	4.42	5.0
Merged-chr6-148523093-1	chr6	148522593	148523593	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78741.0	NM_001347518	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	4.0	4.61	9.25	4.72	4.67	0.0	9.51	2.21	7.49
Merged-chr10-116893993-1	chr10	116893493	116894493	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033333, intron 1 of 24)	intron (NM_001033333, intron 1 of 24)	2886.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	7.44	2.76	1.85	4.05	4.2	1.61	5.28	4.42	0.62
Merged-chr15-63606086-2	chr15	63605580	63606580	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126472.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	17.73	18.43	21.27	18.89	13.53	25.72	24.29	15.92	5.0
Merged-chr9-41212857-2	chr9	41212343	41213343	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040392, intron 2 of 4)	intron (NR_040392, intron 2 of 4)	6688.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	0.57	3.23	1.85	6.75	1.87	3.22	23.24	10.61	19.36
Merged-chr4-149001700-1	chr4	149001200	149002200	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 3 of 8)	intron (NM_019781, intron 3 of 8)	-49378.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	6.29	6.91	8.32	4.72	4.67	7.23	3.17	0.88	7.49
Merged-chr17-35232897-1	chr17	35232397	35233397	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-2113.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	103.54	91.7	86.95	64.77	49.45	65.11	70.76	100.37	58.71
Merged-chr3-127923397-1	chr3	127922897	127923897	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040552, intron 1 of 4)	intron (NR_040552, intron 1 of 4)	7226.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	2.86	2.76	0.0	7.42	5.6	2.41	1.06	2.21	2.5
Merged-chrX-105884682-2	chrX	105884186	105885186	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 5 of 34)	intron (NM_009530, intron 5 of 34)	44686.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	30.89	31.33	19.42	32.39	26.12	24.11	32.74	42.01	19.36
Merged-chr14-20067512-3	chr14	20067026	20068026	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15646.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	4.0	5.53	0.0	2.7	2.8	4.82	2.11	2.65	3.75
Merged-chr1-172003656-1	chr1	172003156	172004156	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_033509, exon 8 of 8)	3' UTR (NM_033509, exon 8 of 8)	23639.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	21.74	5.53	12.02	12.14	4.67	1.61	5.28	4.86	3.75
Merged-chr1-92225449-2	chr1	92224951	92225951	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45110.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.86	2.76	4.62	2.7	1.87	1.61	4.22	2.21	1.25
Merged-chr16-94546032-2	chr16	94545514	94546514	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19385.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	32.61	23.04	15.72	50.6	40.12	20.09	60.2	77.38	33.1
Merged-chr5-143919468-2	chr5	143918966	143919966	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008886, intron 7 of 14)	intron (NM_008886, intron 7 of 14)	9465.0	NM_008886	18861.0	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	PMS1 homolog2, mismatch repair system component	protein-coding	18.31	21.2	17.57	35.09	23.79	41.8	32.74	34.05	26.85
Merged-chr4-109280940-3	chr4	109280428	109281428	+	733.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007943, intron 1 of 24)	CpG	653.0	NM_007943	13858.0	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	58.35	46.54	31.45	78.27	47.58	86.01	72.88	30.95	48.09
Merged-chr2-26644068-2	chr2	26643579	26644579	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NR_024068	72091.0	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	6.29	5.07	4.62	6.75	0.93	4.82	3.17	5.75	6.25
Merged-chr14-101561431-1	chr14	101560931	101561931	+	733.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	47760.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	33.75	29.03	30.52	23.62	28.46	26.53	25.35	22.99	8.12
Merged-chr5-31198640-3	chr5	31198074	31199074	+	733.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175311)	TTS (NM_175311)	3468.0	NM_001177901	101023.0	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	24.6	36.4	36.07	26.99	28.46	40.19	40.14	44.66	41.84
Merged-chr11-82088164-3	chr11	82087655	82088655	+	733.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13690.0	NM_011331	20293.0	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	18.31	9.68	11.1	17.54	7.93	8.04	16.9	27.86	14.99
Merged-chr10-86463929-3	chr10	86463405	86464405	+	733.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	34991.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	9.15	2.76	1.85	6.75	0.93	7.23	1.06	0.0	3.75
Merged-chr12-119207391-4	chr12	119206908	119207908	+	733.427063	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177290, intron 2 of 13)	intron (NM_177290, intron 2 of 13)	30868.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	8.01	9.22	9.25	12.82	7.0	4.82	13.73	9.29	5.0
Merged-chr1-54443800-2	chr1	54443302	54444302	+	733.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4776.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	4.58	6.45	6.47	2.7	5.6	8.04	6.34	2.65	1.25
Merged-chr11-40714084-2	chr11	40713576	40714576	+	733.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013552, exon 11 of 18)	exon (NM_013552, exon 11 of 18)	-18873.0	NM_001199274	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	8.01	13.82	9.25	14.84	14.93	18.49	10.56	7.07	6.25
Merged-chr5-120648999-5	chr5	120648539	120649539	+	733.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001281999)	promoter-TSS (NM_001281999)	-149.0	NM_001281999	19415.0	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	6.86	1.84	3.7	7.42	7.93	0.8	4.22	9.29	1.25
Merged-chr1-177282181-3	chr1	177281688	177282688	+	733.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33421.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	5.72	3.23	1.85	4.72	5.6	3.22	6.34	7.96	7.49
Merged-chr9-44170188-2	chr9	44169696	44170696	+	733.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 3 of 15)	intron (NM_007619, intron 3 of 15)	35538.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	33.18	35.02	41.62	56.68	49.45	48.23	44.36	37.14	29.98
Merged-chr8-108809037-2	chr8	108808533	108809533	+	733.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	94389.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	17.73	29.03	22.2	16.87	18.19	20.9	11.62	16.36	8.74
Merged-chr12-59216387-2	chr12	59215878	59216878	+	733.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033156, intron 1 of 3)	intron (NM_001033156, intron 1 of 3)	3105.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	105.83	146.99	71.22	116.05	129.69	144.68	135.19	137.96	106.17
Merged-chr10-68104753-1	chr10	68104253	68105253	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 8 of 9)	intron (NM_023598, intron 8 of 9)	125183.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	143.01	81.1	37.92	137.64	65.78	75.56	73.93	57.48	41.22
Merged-chr8-83077570-1	chr8	83077070	83078070	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	-87782.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	10.3	12.44	9.25	21.59	7.93	20.09	5.28	3.1	5.0
Merged-chr15-58861388-1	chr15	58860888	58861888	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-11261.0	NM_026642	68260.0	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	6.29	2.76	0.0	2.02	4.67	9.65	8.45	1.33	4.37
Merged-chr16-18130480-1	chr16	18129980	18130980	+	733.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022982, intron 1 of 1)	intron (NM_022982, intron 1 of 1)	2774.0	NM_022982	65079.0	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	2.86	0.46	6.47	2.7	0.93	1.61	3.17	5.75	2.5
Merged-chr5-73180199-1	chr5	73179699	73180699	+	733.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	76419.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	1.72	4.15	1.85	2.02	3.73	3.22	6.34	5.75	2.5
Merged-chr4-96591431-1	chr4	96590931	96591931	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028979)	promoter-TSS (NM_028979)	54.0	NM_028979	74519.0	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	1.72	6.45	5.55	11.47	12.13	14.47	0.0	1.33	0.62
Merged-chr6-17655284-1	chr6	17654784	17655784	+	733.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007604, intron 4 of 9)	intron (NM_007604, intron 4 of 9)	18274.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	18.88	21.2	13.87	33.06	21.93	32.96	19.01	24.76	6.25
Merged-chr2-167483293-3	chr2	167482807	167483807	+	733.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_170756, exon 3 of 3)	3' UTR (NM_170756, exon 3 of 3)	-9338.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	33.75	14.75	30.52	46.56	28.46	29.74	44.36	49.08	14.99
Merged-chr12-76519050-3	chr12	76518553	76519553	+	733.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14159.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	13.16	22.58	5.55	19.57	10.26	6.43	12.67	11.05	5.0
Merged-chr10-79554475-3	chr10	79554050	79555050	+	733.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316699, intron 1 of 13)	CpG	578.0	NM_001316699	70427.0	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	17.16	15.67	7.4	22.27	10.26	16.08	23.24	13.71	20.61
Merged-chr2-129414280-2	chr2	129413782	129414782	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43143.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	22.88	11.52	9.25	82.32	54.11	67.52	20.07	18.57	14.99
Merged-chr13-43094723-2	chr13	43094253	43095253	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001302636, exon 7 of 13)	exon (NM_001302636, exon 7 of 13)	-28086.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.86	11.06	5.55	9.45	5.6	7.23	7.39	7.96	2.5
Merged-chr1-182292253-2	chr1	182291762	182292762	+	733.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-8572.0	NR_015458	67330.0	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	7.44	5.07	9.25	14.17	12.13	8.04	8.45	7.07	5.62
Merged-chr1-39636357-1	chr1	39635857	39636857	+	733.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	14825.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	3.43	2.76	2.77	14.17	6.53	16.88	4.22	1.77	6.87
Merged-chr18-53934457-2	chr18	53933965	53934965	+	733.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	72352.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	27.46	27.65	26.82	21.59	29.86	28.94	11.62	11.5	9.37
Merged-chr8-71511843-3	chr8	71511368	71512368	+	733.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_032398)	promoter-TSS (NM_032398)	-99.0	NM_032398	84094.0	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	2.29	3.69	0.0	8.1	1.4	4.02	2.11	7.07	3.75
Merged-chr2-128416424-3	chr2	128415935	128416935	+	733.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	12916.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	8.01	8.75	12.02	5.4	4.67	3.22	16.9	20.78	9.99
Merged-chr4-134249843-3	chr4	134249324	134250324	+	733.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4233.0	NM_024215	68040.0	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	5.15	1.38	1.85	6.07	2.8	0.0	2.11	0.44	3.12
Merged-chr3-13473159-2	chr3	13472641	13473641	+	733.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001357036, exon 1 of 9)	5' UTR (NM_001357036, exon 1 of 9)	342.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.57	0.92	7.4	2.02	3.73	0.0	1.06	1.77	1.25
Merged-chr17-56350907-3	chr17	56350412	56351412	+	733.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24862.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	1.72	0.92	5.55	7.42	0.93	1.61	2.11	3.98	0.0
Merged-chr14-61549737-3	chr14	61549217	61550217	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310603, intron 2 of 3)	intron (NM_001310603, intron 2 of 3)	7169.0	NM_025697	66674.0	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	48.05	62.67	28.67	45.88	44.78	42.6	69.71	91.97	33.72
Merged-chr4-151051348-3	chr4	151050841	151051841	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009498, intron 2 of 4)	L1MB5|LINE|L1	6612.0	NM_009498	22319.0	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	18.31	17.97	36.07	22.27	12.13	17.68	17.96	19.46	18.11
Merged-chr3-31139212-3	chr3	31138715	31139715	+	733.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10705.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	14.87	18.43	12.95	14.84	15.86	12.86	20.07	26.97	18.74
Merged-chr10-7050054-2	chr10	7049557	7050557	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26872.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	21.17	18.89	16.65	37.11	15.86	28.94	7.39	4.42	3.12
Merged-chr13-60605253-2	chr13	60604756	60605756	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	3045.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	49.77	75.11	41.62	38.46	34.99	68.32	45.42	36.7	31.85
Merged-chr8-104655164-2	chr8	104654653	104655653	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13425.0	NM_026753	68523.0	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	2.29	1.84	0.0	3.37	5.13	1.61	3.17	1.77	9.37
Merged-chr2-130178806-2	chr2	130178321	130179321	+	733.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009225, intron 1 of 6)	CpG	543.0	NM_009225	20638.0	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	192.78	185.24	130.42	184.2	198.27	169.6	177.44	153.87	88.06
Merged-chr2-154752223-2	chr2	154751736	154752736	+	733.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-38874.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	5.72	6.45	5.55	10.12	7.0	3.22	5.28	3.54	3.75
Merged-chr11-121744159-3	chr11	121743672	121744672	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41745.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	254.56	293.98	157.24	256.39	223.92	254.8	221.8	298.46	160.5
Merged-chr3-87031075-3	chr3	87030571	87031571	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31731.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	4.0	5.07	3.7	4.72	1.4	0.0	1.06	3.54	6.25
Merged-chr3-152191959-3	chr3	152191458	152192458	+	733.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	intron (NM_001356364, intron 1 of 2)	1887.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	34.32	33.64	9.25	26.31	27.52	22.51	26.4	21.22	14.36
Merged-chr16-91561234-2	chr16	91560731	91561731	+	733.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 5 of 6)	intron (NM_008338, intron 5 of 6)	14137.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	33.18	41.47	28.67	45.88	23.79	42.6	69.71	71.19	49.96
Merged-chr12-16847421-2	chr12	16846933	16847933	+	733.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	36468.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	6.86	6.91	4.62	8.1	8.4	12.86	8.45	2.65	14.36
Merged-chr18-4350779-4	chr18	4350232	4351232	+	733.0625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	2221.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	105.83	150.22	101.74	126.85	137.62	103.69	168.99	164.04	88.68
Merged-chr4-11481265-3	chr4	11480768	11481768	+	733.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4690.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	18.88	29.95	33.3	20.92	13.53	19.29	40.14	38.91	24.98
Merged-chr1-138162895-3	chr1	138162378	138163378	+	733.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	12248.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	21.74	35.94	38.85	18.22	15.39	15.27	23.24	15.03	19.36
Merged-chr11-70845294-1	chr11	70844794	70845794	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291141, intron 1 of 16)	intron (NM_001291141, intron 1 of 16)	533.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	144.73	83.4	121.17	131.57	83.04	102.88	120.41	77.82	72.45
Merged-chr1-80371663-1	chr1	80371163	80372163	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-30973.0	NM_016716	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	3.43	1.84	5.55	2.7	1.4	3.22	3.17	3.54	3.75
Merged-chr19-56144408-1	chr19	56143908	56144908	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143504.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	1.72	4.61	8.32	12.14	8.86	4.82	3.17	3.54	9.99
Merged-chr15-83510401-1	chr15	83509901	83510901	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357953, intron 1 of 11)	intron (NM_001357953, intron 1 of 11)	506.0	NM_178869	319953.0	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	15.45	8.29	1.85	13.49	7.0	18.49	13.73	14.59	7.49
Merged-chr5-113875018-1	chr5	113874518	113875518	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011779, intron 2 of 10)	intron (NM_011779, intron 2 of 10)	33688.0	NM_011779	23790.0	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	2.86	2.76	7.4	11.47	7.46	6.43	8.45	2.21	3.75
Merged-chr11-50018966-2	chr11	50018469	50019469	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6362.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	10.3	4.15	7.4	10.12	7.93	0.0	7.39	7.07	2.5
Merged-chr11-110967295-1	chr11	110966795	110967795	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252207)	promoter-TSS (NM_001252207)	-738.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	44.05	41.93	20.35	99.18	78.37	71.54	66.54	61.9	42.47
Merged-chr16-97461431-2	chr16	97460953	97461953	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010846, intron 1 of 10)	intron (NM_010846, intron 1 of 10)	1452.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	12.59	11.98	28.67	14.84	5.6	22.51	16.9	17.69	10.62
Merged-chr9-48410410-1	chr9	48409910	48410910	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43934.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	1.14	0.92	0.0	0.0	0.0	0.8	55.98	67.21	48.09
Merged-chr2-167146057-1	chr2	167145557	167146557	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008420, intron 1 of 1)	B3|SINE|B2	42761.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	6.29	1.84	3.7	5.4	5.6	0.0	1.06	3.1	3.75
Merged-chr8-123254795-1	chr8	123254295	123255295	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310661)	promoter-TSS (NM_001310661)	-573.0	NM_028200	72325.0	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	36.04	37.32	51.8	60.72	41.52	62.7	48.58	48.2	43.72
Merged-chr7-82881564-1	chr7	82881064	82882064	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14231.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	1.14	1.84	1.85	6.07	3.73	1.61	4.22	9.73	7.49
Merged-chr10-88054445-1	chr10	88053945	88054945	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36627.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	5.15	1.84	6.47	14.17	10.73	8.84	4.22	7.07	7.49
Merged-chr2-5655307-1	chr2	5654807	5655807	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MTC|LTR|ERVL-MaLR	20739.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	12.59	7.83	8.32	22.27	14.46	15.27	5.28	7.96	11.24
Merged-chr5-123820735-2	chr5	123820238	123821238	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042421, intron 63 of 63)	intron (NM_001042421, intron 63 of 63)	44778.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.58	3.23	0.0	6.07	3.27	10.45	3.17	4.42	2.5
Merged-chr2-3800015-1	chr2	3799515	3800515	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86557.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.15	0.92	1.85	4.05	2.33	1.61	3.17	3.54	5.0
Merged-chrX-13616961-1	chrX	13616461	13617461	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 7 of 26)	intron (NM_001284503, intron 7 of 26)	-15808.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	8.01	8.75	11.1	11.47	7.46	6.43	2.11	3.1	3.75
Merged-chr11-106355843-2	chr11	106355340	106356340	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6450.0	NM_133199	110880.0	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	8.01	8.29	6.47	12.82	6.06	4.82	4.22	10.17	3.75
Merged-chr16-4469850-2	chr16	4469345	4470345	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49347.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	9.72	12.9	14.8	19.57	10.73	8.84	9.51	9.29	9.99
Merged-chr1-136695056-3	chr1	136694592	136695592	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1119.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	9.15	7.83	12.95	16.87	8.4	5.63	10.56	8.4	13.12
Merged-chr10-57714466-2	chr10	57713989	57714989	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	63508.0	NM_001190402	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	16.59	16.59	20.35	18.89	9.33	8.04	20.07	26.09	8.12
Merged-chr4-155736272-1	chr4	155735772	155736772	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101506, intron 2 of 3)	MIRb|SINE|MIR	1468.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	12.01	8.75	24.05	18.89	13.53	27.33	10.56	15.03	4.37
Merged-chr1-178683878-1	chr1	178683378	178684378	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161665, intron 3 of 14)	intron (NM_001161665, intron 3 of 14)	154753.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	9.72	3.23	7.4	3.37	1.4	2.41	7.39	0.0	0.0
Merged-chr1-45867184-1	chr1	45866684	45867684	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58410.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	117.27	142.84	69.37	112.0	94.7	127.8	123.57	129.11	95.55
Merged-chr8-67431594-1	chr8	67431094	67432094	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59164.0	NM_008673	17960.0	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	2.29	1.38	0.0	3.37	3.27	0.0	2.11	1.77	3.12
Merged-chr1-97567956-1	chr1	97567456	97568456	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93720.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	3.43	3.69	3.7	4.72	4.67	4.82	5.28	7.52	3.75
Merged-chrX-102070637-1	chrX	102070137	102071137	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278534, exon 1 of 2)	exon (NM_001278534, exon 1 of 2)	670.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	37.18	35.48	20.35	27.66	34.06	23.31	23.24	27.86	13.12
Merged-chr6-4004073-1	chr6	4003573	4004573	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025331)	promoter-TSS (NM_025331)	86.0	NM_025331	66066.0	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	2.29	3.23	0.0	2.7	2.8	1.61	5.28	3.1	5.62
Merged-chr8-106433145-1	chr8	106432645	106433645	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17806.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	1.72	2.3	0.0	2.02	1.4	1.61	3.17	2.65	1.25
Merged-chr4-150001474-1	chr4	150000974	150001974	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	1762.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	19.45	8.29	16.65	18.89	8.4	16.88	8.45	6.19	11.24
Merged-chr19-37307408-1	chr19	37306908	37307908	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031156, intron 10 of 23)	intron (NM_031156, intron 10 of 23)	23205.0	NM_031156	15925.0	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	35.47	29.49	14.8	35.76	39.65	35.37	58.09	52.18	40.59
Merged-chr1-91086384-1	chr1	91085884	91086884	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 7 of 22)	intron (NM_008515, intron 7 of 22)	32940.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	18.88	9.22	24.05	12.82	4.67	9.65	34.85	23.88	13.12
Merged-chr10-8196495-1	chr10	8195995	8196995	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-240372.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	6.29	1.38	5.55	4.05	4.2	4.82	10.56	8.84	1.87
Merged-chr13-115090657-2	chr13	115090169	115091169	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134058)	promoter-TSS (NM_134058)	-511.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	56.06	34.1	31.45	91.76	70.91	57.07	124.63	105.68	46.22
Merged-chr1-157560831-2	chr1	157560334	157561334	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027641, exon 20 of 27)	non-coding (NR_027641, exon 20 of 27)	34664.0	NM_001159986	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	4.0	2.3	4.62	1.35	3.27	0.0	1.06	0.0	3.75
Merged-chr1-171037081-1	chr1	171036581	171037581	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Asp-GAY|tRNA|tRNA	18155.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	9.15	11.98	16.65	14.84	6.06	6.43	11.62	2.65	5.0
Merged-chr10-22008496-1	chr10	22007996	22008996	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13830.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	9.15	2.3	1.85	8.77	2.33	1.61	13.73	11.94	5.0
Merged-chr16-33956358-2	chr16	33955853	33956853	+	733.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009471, exon 6 of 6)	3' UTR (NM_009471, exon 6 of 6)	10685.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	20.02	17.51	11.1	26.31	14.0	36.97	27.46	13.71	23.11
Merged-chr6-54971947-1	chr6	54971447	54972447	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001171007)	promoter-TSS (NM_001171007)	-286.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	56.63	78.33	83.25	70.85	64.84	62.7	62.31	84.01	55.58
Merged-chr6-90487360-1	chr6	90486860	90487860	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24784.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	12.01	5.99	7.4	8.1	7.46	6.43	3.17	3.54	5.0
Merged-chr17-23967881-1	chr17	23967381	23968381	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	7349.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	36.61	37.78	21.27	53.98	26.12	32.15	99.28	87.11	63.08
Merged-chr10-98517821-1	chr10	98517321	98518321	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-165954.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	12.01	17.97	16.65	6.75	7.46	7.23	7.39	5.75	11.24
Merged-chr14-27340890-1	chr14	27340390	27341390	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	PB1D10|SINE|Alu	4853.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	12.01	14.75	17.57	15.52	13.06	9.65	26.4	17.24	22.48
Merged-chr7-71876284-1	chr7	71875784	71876784	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33411.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	6.29	6.91	6.47	15.52	3.73	9.65	5.28	4.42	8.74
Merged-chr15-50972714-1	chr15	50972214	50973214	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82673.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.0	2.3	1.85	3.37	1.4	3.22	2.11	3.54	3.75
Merged-chr4-41713945-1	chr4	41713445	41714445	+	733.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-428.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	42.9	30.87	12.02	35.09	28.46	32.96	36.97	22.11	16.86
Merged-chr11-110380282-1	chr11	110379782	110380782	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18820.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	18.88	8.75	16.65	18.89	17.26	13.66	19.01	12.82	14.36
Merged-chr18-47441705-1	chr18	47441205	47442205	+	733.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10963.0	NR_033453	77668.0	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	0.0	2.76	2.77	4.05	8.4	8.04	1.06	3.54	1.25
Merged-chr10-98882681-3	chr10	98882178	98883178	+	732.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	60.07	52.53	20.35	91.76	48.52	60.28	61.26	64.11	40.59
Merged-chr6-108834492-3	chr6	108833982	108834982	+	732.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	intron (NM_138677, intron 1 of 11)	5841.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	13.16	12.44	9.25	13.49	9.8	20.9	15.84	9.73	14.36
Merged-chr3-51481258-3	chr3	51480741	51481741	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2725.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	9.15	5.99	1.85	6.75	3.27	2.41	0.0	0.88	0.0
Merged-chr3-90472388-3	chr3	90471904	90472904	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-3797.0	NM_026374	67781.0	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	14.3	8.29	7.4	5.4	5.13	9.65	10.56	9.29	13.74
Merged-chr3-84169105-3	chr3	84168611	84169611	+	732.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271728, intron 10 of 11)	intron (NM_001271728, intron 10 of 11)	-5527.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	2.86	3.69	9.25	4.72	2.33	1.61	7.39	4.42	5.0
Merged-chr8-22963261-3	chr8	22962760	22963760	+	732.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11576.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	10.3	8.29	7.4	10.8	15.39	6.43	9.51	26.53	10.62
Merged-chr4-131837134-2	chr4	131836643	131837643	+	732.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083119, intron 1 of 30)	CpG	1135.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	5.15	0.46	3.7	6.07	1.87	6.43	6.34	1.33	8.74
Merged-chr19-36736716-2	chr19	36736227	36737227	+	732.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016854)	promoter-TSS (NM_016854)	-123.0	NM_016854	53412.0	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.0	4.15	5.55	0.67	1.87	1.61	0.0	3.54	0.0
Merged-chr1-172047086-3	chr1	172046578	172047578	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10518.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	9.15	2.3	3.7	4.05	4.67	0.8	6.34	1.77	1.25
Merged-chr9-106687492-3	chr9	106686938	106687938	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030730)	TTS (NM_030730)	-1486.0	NM_001286498	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	3.43	3.69	5.55	5.4	5.6	10.45	5.28	1.77	6.25
Merged-chrX-157492682-3	chrX	157492184	157493184	+	732.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009214)	promoter-TSS (NM_009214)	-397.0	NM_009214	20603.0	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	19.45	31.33	20.35	39.13	24.26	38.58	40.14	43.77	26.85
Merged-chr6-122928861-3	chr6	122928369	122929369	+	732.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199311, intron 3 of 5)	intron (NM_199311, intron 3 of 5)	7021.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	18.88	22.58	17.57	18.89	18.66	20.9	44.36	22.99	18.11
Merged-chr16-32547776-2	chr16	32547271	32548271	+	732.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51490.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	1.72	3.69	0.0	8.1	0.93	0.0	6.34	0.88	2.5
Merged-chrX-74313494-2	chrX	74313002	74314002	+	732.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138607, intron 1 of 12)	intron (NM_138607, intron 1 of 12)	469.0	NM_138607	108160.0	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	141.3	140.54	77.7	140.34	146.02	98.87	124.63	104.79	71.2
Merged-chr5-41519115-2	chr5	41518612	41519612	+	732.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	188579.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.0	5.07	3.7	0.67	5.13	3.22	9.51	5.31	5.0
Merged-chr7-134669710-3	chr7	134669208	134670208	+	732.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033420)	promoter-TSS (NM_001033420)	-979.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	14.3	13.36	30.52	19.57	12.13	24.11	10.56	11.05	9.99
Merged-chr2-14269376-2	chr2	14268875	14269875	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 7 of 29)	intron (NM_008625, intron 7 of 29)	8372.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	5.15	13.82	9.25	12.14	11.2	11.25	5.28	6.63	8.74
Merged-chr7-16782058-2	chr7	16781581	16782581	+	732.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009201, exon 1 of 9)	exon (NM_009201, exon 1 of 9)	735.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	11.44	6.45	11.1	10.8	14.0	15.27	27.46	6.63	14.36
Merged-chr11-114680927-2	chr11	114680442	114681442	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	5474.0	NM_053273	117160.0	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	62.35	39.17	33.3	101.88	54.11	96.45	87.66	79.15	42.47
Merged-chr16-23991337-3	chr16	23990828	23991828	+	732.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2476.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	2.86	5.07	3.7	11.47	2.33	0.0	1.06	4.42	0.62
Merged-chr9-7784037-1	chr9	7783537	7784537	+	732.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_049191)	promoter-TSS (NR_049191)	-353.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	48.05	70.5	32.37	35.76	35.45	48.23	60.2	54.83	30.6
Merged-chr12-105972507-2	chr12	105971997	105972997	+	732.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-37766.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	13.73	12.9	9.25	2.02	0.93	0.0	6.34	4.86	7.49
Merged-chr5-137836257-3	chr5	137835749	137836749	+	732.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153510)	promoter-TSS (NM_153510)	29.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	18.31	20.27	30.52	14.84	13.53	20.09	17.96	21.22	16.86
Merged-chr3-95232556-3	chr3	95232071	95233071	+	732.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172395, exon 3 of 5)	exon (NM_172395, exon 3 of 5)	3628.0	NM_001038708	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	24.03	20.27	22.2	20.24	15.86	27.33	34.85	29.63	38.72
Merged-chr6-31110099-2	chr6	31109590	31110590	+	732.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46997.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	84.09	91.7	81.4	105.93	80.71	71.54	162.65	162.72	94.93
Merged-chr17-12656003-3	chr17	12655509	12656509	+	732.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009202, intron 8 of 10)	ORR1E|LTR|ERVL-MaLR	19829.0	NM_009202	20517.0	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	5.15	5.53	0.0	2.7	2.33	1.61	2.11	0.0	7.49
Merged-chr14-60916875-1	chr14	60916375	60917375	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	121112.0	NM_001164155	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	5.72	3.23	7.4	8.77	2.33	13.66	9.51	13.71	9.99
Merged-chr14-26491372-3	chr14	26490861	26491861	+	732.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	43263.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	8.58	5.99	0.0	3.37	2.33	2.41	9.51	1.77	6.25
Merged-chr13-59975451-1	chr13	59974951	59975951	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54260.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	6.86	3.23	1.85	8.1	23.79	16.08	5.28	2.21	7.49
Merged-chr3-37754353-1	chr3	37753853	37754853	+	732.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29993.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	1.14	5.07	1.85	11.47	4.2	4.02	7.39	2.21	1.87
Merged-chr12-67059369-2	chr12	67058884	67059884	+	732.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193266, intron 1 of 16)	GSAT_MM|Satellite|Satellite	163165.0	NM_001193266	320772.0	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	1.72	1.84	5.55	2.7	2.8	5.63	4.22	2.65	5.0
Merged-chr13-113607473-2	chr13	113607007	113608007	+	732.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11057.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	39.47	39.17	22.2	12.82	7.0	16.08	14.79	16.8	14.99
Merged-chr9-71189261-2	chr9	71188743	71189743	+	732.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	intron (NR_110517, intron 5 of 5)	20467.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	8.58	0.92	0.0	4.05	1.87	0.0	4.22	2.65	6.25
Merged-chr2-164972929-2	chr2	164972429	164973429	+	732.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020333, intron 1 of 25)	L2b|LINE|L2	4941.0	NM_020333	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	4.0	1.84	3.7	7.42	2.33	6.43	5.28	0.88	5.0
Merged-chr12-100501438-3	chr12	100500932	100501932	+	732.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19390.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	18.31	9.68	1.85	10.8	14.0	14.47	4.22	4.86	5.0
Merged-chr1-74713859-3	chr1	74713367	74714367	+	732.611084	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024264, exon 1 of 9)	exon (NM_024264, exon 1 of 9)	332.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	87.52	109.67	70.3	100.53	123.16	122.98	114.07	122.04	84.31
Merged-chr15-62096802-2	chr15	62096297	62097297	+	732.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	57540.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	16.02	12.9	17.57	18.89	10.26	8.84	8.45	8.4	11.24
Merged-chr9-49489101-3	chr9	49488626	49489626	+	732.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2901.0	NM_172770	235330.0	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	1.72	1.84	1.85	4.72	2.33	3.22	2.11	2.21	2.5
Merged-chr17-27501828-2	chr17	27501325	27502325	+	732.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013385, intron 1 of 8)	intron (NM_001013385, intron 1 of 8)	1708.0	NM_001013385	268934.0	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	3.43	0.92	7.4	6.75	1.87	2.41	4.22	0.44	2.5
Merged-chr9-118486551-2	chr9	118486052	118487052	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010136)	TTS (NM_010136)	8363.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	3.43	2.3	1.85	6.75	0.47	1.61	6.34	1.77	5.0
Merged-chr3-95637389-3	chr3	95636925	95637925	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	12445.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	54.35	76.03	46.25	76.92	65.31	74.75	69.71	78.26	56.21
Merged-chr5-38479176-2	chr5	38478700	38479700	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145559, intron 2 of 10)	intron (NM_145559, intron 2 of 10)	1106.0	NM_001102414	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	10.3	5.07	7.4	6.07	1.4	7.23	16.9	5.75	8.74
Merged-chr6-134558921-2	chr6	134558388	134559388	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	8025.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	12.01	15.67	7.4	9.45	9.33	9.65	43.3	48.2	44.97
Merged-chr3-136086641-3	chr3	136086138	136087138	+	732.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	239428.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	13.16	16.59	14.8	17.54	5.6	12.06	8.45	6.63	8.74
Merged-chr9-114778420-1	chr9	114777920	114778920	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	L1MB8|LINE|L1	3573.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	25.17	11.52	16.65	13.49	6.53	16.88	27.46	18.13	13.12
Merged-chr16-49278690-2	chr16	49278169	49279169	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	221183.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	2.29	2.76	5.55	3.37	3.73	0.0	6.34	3.98	0.62
Merged-chr7-45406690-1	chr7	45406190	45407190	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010596, exon 1 of 2)	exon (NM_010596, exon 1 of 2)	730.0	NM_010596	16495.0	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	5.15	1.84	3.7	3.37	2.33	3.22	10.56	3.98	4.37
Merged-chr15-58238054-1	chr15	58237554	58238554	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23162.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	16.59	14.28	7.4	21.59	12.6	7.23	17.96	7.07	12.49
Merged-chr2-6405422-2	chr2	6404923	6405923	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181399, intron 4 of 13)	intron (NM_181399, intron 4 of 13)	52687.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	2.86	2.76	0.92	1.35	0.93	0.0	2.11	1.77	0.0
Merged-chr14-79487514-1	chr14	79487014	79488014	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-6246.0	NM_018765	22380.0	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	16.59	14.75	9.25	12.14	9.8	11.25	16.9	11.05	6.25
Merged-chr15-30740907-2	chr15	30740393	30741393	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-298233.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	1.72	4.15	5.55	6.07	2.8	1.61	1.06	0.88	3.12
Merged-chr15-58775752-2	chr15	58775250	58776250	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47677.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	23.45	16.59	15.72	18.22	15.86	8.04	42.25	32.28	17.49
Merged-chr9-114957176-2	chr9	114956676	114957676	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23189.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	1.14	1.38	3.7	6.07	1.4	1.61	5.28	2.65	3.75
Merged-chr18-38922475-1	chr18	38921975	38922975	+	732.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	-3776.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	6.86	3.23	1.85	17.54	9.8	14.47	2.11	3.54	0.62
Merged-chr2-4616487-3	chr2	4615993	4616993	+	732.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	35642.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	26.31	27.19	40.7	29.01	36.39	29.74	46.47	31.39	19.98
Merged-chr13-41220407-3	chr13	41219953	41220953	+	732.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019423)	promoter-TSS (NM_019423)	-50.0	NM_019423	54326.0	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	4.58	1.84	1.85	6.75	0.93	3.22	4.22	1.77	1.25
Merged-chr15-78623616-2	chr15	78623113	78624113	+	732.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26566.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	5.72	5.07	4.62	8.1	5.6	5.63	4.22	1.77	5.0
Merged-chr17-86536033-2	chr17	86535522	86536522	+	732.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 10 of 14)	intron (NM_011104, intron 10 of 14)	-217842.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.57	7.37	1.85	3.37	5.6	0.0	5.28	3.98	5.0
Merged-chr8-22708063-3	chr8	22707577	22708577	+	732.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	16.02	22.58	3.7	10.12	17.26	22.51	13.73	12.38	11.24
Merged-chr15-91180074-2	chr15	91179564	91180564	+	732.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	intron (NM_011994, intron 3 of 9)	11943.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	52.06	78.33	46.25	81.64	97.5	71.54	102.45	101.7	61.83
Merged-chr2-59286469-3	chr2	59285929	59286929	+	732.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	100253.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	13.16	9.22	19.42	16.87	16.33	12.86	5.28	7.96	8.12
Merged-chr3-27338636-2	chr3	27338137	27339137	+	732.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009425, exon 5 of 5)	3' UTR (NM_009425, exon 5 of 5)	21560.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	3.43	4.15	7.4	8.1	0.47	4.82	5.28	3.98	0.0
Merged-chr5-137872768-2	chr5	137872235	137873235	+	732.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001024932)	promoter-TSS (NM_001024932)	-977.0	NM_001024932	545812.0	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	15.45	20.74	29.6	33.74	16.33	32.15	24.29	29.63	21.86
Merged-chr7-145309101-2	chr7	145308570	145309570	+	732.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145379, exon 3 of 3)	3' UTR (NM_145379, exon 3 of 3)	-5765.0	NM_203490	211578.0	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	8.01	5.07	12.95	16.87	22.86	21.7	14.79	9.73	8.12
Merged-chr9-100391850-3	chr9	100391321	100392321	+	732.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	94652.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	1.14	3.23	1.85	1.35	1.4	1.61	4.22	2.65	5.0
Merged-chr15-81022219-1	chr15	81021719	81022719	+	732.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 6 of 13)	intron (NM_001082536, intron 6 of 13)	44454.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	41.19	25.8	44.4	32.39	16.79	36.97	26.4	25.2	14.99
Merged-chr3-133550009-1	chr3	133549509	133550509	+	732.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5619.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	19.45	21.2	20.35	28.34	16.79	12.06	15.84	24.76	18.11
Merged-chr11-78263870-1	chr11	78263370	78264370	+	732.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 3 of 38)	intron (NM_001002004, intron 3 of 38)	2116.0	NM_001002004	72503.0	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	17.16	29.95	27.75	32.39	22.39	31.35	24.29	25.2	24.98
Merged-chr13-101763153-3	chr13	101762679	101763679	+	732.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 1 of 15)	intron (NM_001077495, intron 1 of 15)	5038.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	17.73	19.35	15.72	14.84	7.0	9.65	15.84	22.55	9.99
Merged-chr6-97496202-3	chr6	97495727	97496727	+	732.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-8407.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	9.72	9.22	12.02	8.1	5.13	12.86	2.11	1.77	5.62
Merged-chr6-116628867-3	chr6	116628285	116629285	+	732.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302440)	promoter-TSS (NM_001302440)	-84.0	NM_001302440	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	17.73	7.37	7.4	18.22	10.73	11.25	14.79	4.86	8.74
Merged-chr15-57692114-1	chr15	57691614	57692614	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2553.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.58	4.15	0.0	6.07	3.73	0.0	3.17	1.77	3.75
Merged-chr7-98543022-2	chr7	98542528	98543528	+	732.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	48806.0	NM_001113379	434215.0	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	8.01	3.69	2.77	3.37	6.06	0.0	6.34	2.21	5.0
Merged-chr7-68144986-2	chr7	68144501	68145501	+	732.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119232.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	6.29	6.91	5.55	10.8	3.73	4.02	3.17	3.1	5.0
Merged-chr1-87149515-2	chr1	87149007	87150007	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001277925, exon 14 of 18)	exon (NM_001277925, exon 14 of 18)	6629.0	NM_001277925	13599.0	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	2.86	2.3	1.85	4.72	2.8	8.04	7.39	1.33	9.99
Merged-chr8-18935706-2	chr8	18935210	18936210	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 6 of 6)	intron (NM_176951, intron 6 of 6)	15161.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	24.6	24.88	24.97	41.83	26.59	21.7	13.73	22.55	21.23
Merged-chr6-83415718-2	chr6	83415210	83416210	+	732.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-14608.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	9.72	17.51	22.2	16.19	8.86	13.66	20.07	15.03	6.87
Merged-chr4-155667172-1	chr4	155666672	155667672	+	732.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145124, intron 1 of 18)	intron (NM_145124, intron 1 of 18)	2082.0	NM_001256108	76580.0	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	8.58	9.68	13.87	10.12	6.53	13.66	34.85	49.52	38.72
Merged-chr1-138835556-3	chr1	138835043	138836043	+	732.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025565, intron 3 of 4)	intron (NM_001025565, intron 3 of 4)	6901.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	4.58	3.69	0.0	4.05	1.4	1.61	4.22	3.98	1.87
Merged-chr7-106215399-3	chr7	106214889	106215889	+	732.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029000).2	promoter-TSS (NM_029000).2	-49.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	5.15	4.61	0.0	3.37	1.87	0.0	3.17	4.42	0.0
Merged-chr2-91098127-5	chr2	91097567	91098567	+	732.186646	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	1389.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	192.78	240.99	174.82	180.15	168.88	167.19	223.91	247.61	123.03
Merged-chr17-27018077-2	chr17	27017585	27018585	+	732.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001251881)	promoter-TSS (NM_001251881)	50.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	42.9	30.41	34.22	37.78	53.18	59.48	51.75	61.02	24.98
Merged-chr7-30972809-2	chr7	30972323	30973323	+	732.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038860)	promoter-TSS (NR_038860)	646.0	NM_001164185	54135.0	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	5.15	5.53	5.55	2.7	1.87	3.22	2.11	1.33	3.75
Merged-chr5-8350983-2	chr5	8350465	8351465	+	732.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	17195.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	34.32	52.07	18.5	31.04	39.65	24.92	17.96	25.65	18.74
Merged-chr5-92381966-3	chr5	92381435	92382435	+	732.144409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-6199.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	6.29	5.99	1.85	9.45	3.27	0.0	3.17	3.54	1.87
Merged-chr6-131277241-2	chr6	131276740	131277740	+	732.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	16004.0	NM_001327860	66441.0	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	40.04	62.21	49.02	31.71	28.46	57.07	44.36	42.45	36.22
Merged-chr13-41520974-3	chr13	41520475	41521475	+	732.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33615.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	146.45	146.99	103.59	168.0	147.42	163.17	158.43	166.7	83.06
Merged-chr2-160887478-3	chr2	160886972	160887972	+	732.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199118)	promoter-TSS (NM_001199118)	-696.0	NM_001199118	64899.0	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	2.29	3.69	5.55	2.7	4.2	1.61	1.06	0.44	1.25
Merged-chr16-21836861-3	chr16	21836342	21837342	+	732.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42495.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	13.73	19.35	1.85	11.47	13.53	9.65	14.79	14.59	7.49
Merged-chr5-72552205-3	chr5	72551702	72552702	+	732.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 4 of 21)	intron (NR_153351, intron 4 of 21)	7443.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	58.92	64.51	65.67	33.74	27.52	49.03	47.53	61.02	56.21
Merged-chr8-53505649-3	chr8	53505155	53506155	+	732.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6047.0	NM_001205054	11593.0	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	6.86	8.29	15.72	9.45	9.33	15.27	8.45	11.5	6.25
Merged-chr9-25569903-1	chr9	25569403	25570403	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	MTEa|LTR|ERVL-MaLR	88306.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	40.62	33.64	24.05	48.58	46.65	32.96	52.81	31.39	20.61
Merged-chr7-140831631-1	chr7	140831131	140832131	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR21|LTR|ERVK	-3507.0	NM_001347605	76974.0	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik|HIUHase	urate (5-hydroxyiso-) hydrolase	protein-coding	2.86	2.76	1.85	4.05	2.8	1.61	4.22	0.88	0.0
Merged-chr18-68219172-3	chr18	68218660	68219660	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-8786.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	25.17	11.52	10.17	18.22	9.33	11.25	5.28	5.75	7.49
Merged-chr10-14045893-1	chr10	14045393	14046393	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	79514.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.29	3.23	0.0	4.72	4.67	9.65	9.51	22.11	18.11
Merged-chr12-84111002-1	chr12	84110502	84111502	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3326.0	NM_028821	105000.0	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	9.15	2.76	0.92	11.47	3.27	11.25	6.34	1.77	5.0
Merged-chrX-106056018-2	chrX	106055521	106056521	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	28797.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	22.88	23.04	24.97	16.19	16.33	19.29	19.01	25.65	14.36
Merged-chrX-49274631-1	chrX	49274131	49275131	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	MIRc|SINE|MIR	13611.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	10.3	13.82	13.87	10.8	7.46	9.65	24.29	17.69	8.74
Merged-chr9-108568611-1	chr9	108568111	108569111	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029947)	promoter-TSS (NR_029947)	-166.0	NR_029947	723864.0		NR_029947	ENSMUSG00000065579	Mir425	Mirn425|mmu-mir-425	microRNA 425	ncRNA	88.1	93.54	84.17	95.14	61.58	58.68	82.38	78.71	39.97
Merged-chrUn_JH584304-19909-1	chrUn_JH584304	19409	20409	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	39780.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	36.97	44.66	0.0
Merged-chr10-98402782-1	chr10	98402282	98403282	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50915.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	2.29	3.23	1.85	2.7	6.53	3.22	4.22	6.19	5.0
Merged-chr19-34753475-1	chr19	34752975	34753975	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6364.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	16.59	17.97	1.85	20.24	9.8	7.23	23.24	23.88	5.62
Merged-chr16-4740157-1	chr16	4739657	4740657	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	B1_Mus1|SINE|Alu	-1456.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	8.58	18.89	12.95	23.62	26.12	35.37	22.18	22.11	25.61
Merged-chr16-27413495-1	chr16	27412995	27413995	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025615, intron 4 of 9)	intron (NM_001025615, intron 4 of 9)	24539.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	17.16	14.28	10.17	10.12	10.73	16.08	6.34	10.17	8.12
Merged-chr15-6065265-1	chr15	6064765	6065765	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20561.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	6.29	11.52	1.85	4.05	3.27	3.22	7.39	9.73	2.5
Merged-chr4-108762189-1	chr4	108761689	108762689	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	18899.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	13.73	21.2	0.0	8.1	8.86	4.82	5.28	6.19	5.0
Merged-chr10-17925317-1	chr10	17924817	17925817	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	intron (NM_001033432, intron 1 of 3)	22750.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	11.44	14.28	7.4	6.07	4.2	3.22	12.67	4.86	6.87
Merged-chr2-118760025-1	chr2	118759525	118760525	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001982, intron 5 of 10)	intron (NM_001001982, intron 5 of 10)	2636.0	NM_001001982	214239.0	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Ccdc9b|Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.0	0.0	4.62	1.35	1.87	4.82	2.11	3.98	1.25
Merged-chr2-162958407-2	chr2	162957887	162958887	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081338, intron 8 of 22)	intron (NM_001081338, intron 8 of 22)	14922.0	NM_001081338	241764.0	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	L3MBTL1 histone methyl-lysine binding protein	protein-coding	3.43	0.92	3.7	2.7	2.33	8.04	2.11	0.88	1.87
Merged-chr5-45402786-1	chr5	45402286	45403286	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131933, intron 1 of 5)	intron (NR_131933, intron 1 of 5)	21614.0	NR_131933	52401.0	Mm.33854	NR_131933	ENSMUSG00000029092	D5Ertd615e	4930435H24Rik	DNA segment, Chr 5, ERATO Doi 615, expressed	ncRNA	2.29	0.92	3.7	4.05	1.4	4.82	1.06	3.1	8.74
Merged-chr10-20696768-1	chr10	20696268	20697268	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	28310.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	15.45	13.36	11.1	17.54	11.2	20.09	15.84	13.27	11.87
Merged-chr7-92876260-3	chr7	92875774	92876774	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	MIRc|SINE|MIR	1021.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	88.1	117.5	70.3	70.17	78.84	82.79	123.57	112.31	64.33
Merged-chr6-8546437-1	chr6	8545937	8546937	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286729, intron 2 of 7)	intron (NM_001286729, intron 2 of 7)	26379.0	NM_001286729	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	6.29	5.53	0.0	3.37	6.53	4.82	3.17	7.07	0.0
Merged-chr7-16845448-1	chr7	16844948	16845948	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178900, intron 1 of 17)	intron (NM_178900, intron 1 of 17)	2383.0	NM_178900	101540.0	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	14.3	16.59	6.47	15.52	14.46	14.47	25.35	21.67	9.37
Merged-chr19-5131424-1	chr19	5130924	5131924	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-13016.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	10.3	10.14	4.62	7.42	4.2	1.61	13.73	15.48	15.61
Merged-chr2-153742025-1	chr2	153741525	153742525	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007896, intron 1 of 6)	intron (NM_007896, intron 1 of 6)	738.0	NM_007896	13589.0	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	233.4	182.47	185.92	217.93	165.61	128.61	214.41	187.92	144.89
Merged-chr6-148252897-1	chr6	148252397	148253397	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 13 of 19)	intron (NM_198967, intron 13 of 19)	-40523.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	6.29	5.53	3.7	5.4	1.87	8.04	6.34	7.52	4.37
Merged-chr9-98973319-1	chr9	98972819	98973819	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-13054.0	NM_011810	23873.0	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	4.58	1.38	5.55	4.05	0.93	3.22	5.28	1.77	1.25
Merged-chr11-62553266-2	chr11	62552762	62553762	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_002875)	TTS (NR_002875)	1531.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	45.76	35.02	18.5	46.56	22.86	22.51	27.46	26.97	20.61
Merged-chr14-13912431-2	chr14	13911908	13912908	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48905.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	8.01	6.91	9.25	6.07	10.26	3.22	10.56	8.4	14.36
Merged-chr5-73540360-1	chr5	73539860	73540860	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153313, intron 7 of 9)	intron (NR_153313, intron 7 of 9)	49334.0	NM_178896	100737.0	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	2.86	6.91	3.7	2.02	3.27	1.61	1.06	0.0	3.75
Merged-chr13-17992086-1	chr13	17991586	17992586	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025904, intron 1 of 2)	intron (NM_025904, intron 1 of 2)	1265.0	NM_025904	67008.0	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	20.59	24.42	7.4	27.66	16.33	19.29	21.12	25.65	26.23
Merged-chr17-72833482-1	chr17	72832982	72833982	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3146.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	8.01	18.43	10.17	16.87	15.86	30.54	26.4	19.01	8.74
Merged-chr9-61627953-2	chr9	61627448	61628448	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	255582.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	9.72	0.92	5.55	14.17	9.33	6.43	6.34	1.77	2.5
Merged-chr7-101912094-1	chr7	101911594	101912594	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027053)	TTS (NM_027053)	-5735.0	NM_001081679	791260.0	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	12.01	10.14	11.1	12.82	7.46	10.45	7.39	7.96	9.99
Merged-chr3-76068117-1	chr3	76067617	76068617	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6444.0	NM_178673	213262.0	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	1.72	3.23	5.55	3.37	5.13	1.61	2.11	3.1	3.12
Merged-chr9-40723021-1	chr9	40722521	40723521	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	MLT1B|LTR|ERVL-MaLR	37057.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	12.59	7.37	3.7	13.49	3.27	4.82	1.06	0.0	1.25
Merged-chr8-94371579-2	chr8	94371079	94372079	+	732.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14850.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	72.65	53.45	40.7	45.88	26.12	55.46	38.02	41.12	36.22
Merged-chr5-35235600-1	chr5	35235100	35236100	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42966.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	8.58	9.68	0.0	2.7	3.27	0.0	13.73	13.27	13.12
Merged-chr10-19013854-1	chr10	19013354	19014354	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009397, intron 1 of 8)	intron (NM_009397, intron 1 of 8)	1556.0	NM_009397	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	108.12	136.85	74.0	83.66	43.85	30.54	90.83	94.18	63.7
Merged-chr10-75318408-2	chr10	75317903	75318903	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331095, intron 1 of 2)	intron (NM_001331095, intron 1 of 2)	803.0	NM_001331095	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	9.15	3.69	5.55	2.02	3.27	1.61	5.28	1.33	1.25
Merged-chr6-100287849-1	chr6	100287349	100288349	+	732.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019743)	promoter-TSS (NM_019743)	-491.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	54.35	18.89	33.3	62.75	23.79	28.13	59.15	22.99	11.24
Merged-chr16-22358644-1	chr16	22358144	22359144	+	732.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63656.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	167.61	210.58	142.44	155.86	198.73	168.8	227.08	291.83	120.53
Merged-chr13-101538285-3	chr13	101537770	101538770	+	731.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-140690.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	12.01	16.13	8.32	18.89	9.8	8.04	10.56	11.5	5.62
Merged-chr5-137760235-3	chr5	137759738	137760738	+	731.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023910)	TTS (NM_023910)	14269.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	7.44	3.23	3.7	4.05	2.33	0.0	4.22	4.86	5.0
Merged-chr7-44356559-3	chr7	44356107	44357107	+	731.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 24 of 24)	intron (NM_001034115, intron 24 of 24)	18423.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	3.43	2.76	0.0	5.4	2.33	1.61	3.17	1.77	1.87
Merged-chr17-46893269-3	chr17	46892775	46893775	+	731.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178385)	TTS (NM_178385)	2654.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	37.76	24.88	29.6	61.4	40.12	19.29	36.97	27.86	8.12
Merged-chr14-61683715-4	chr14	61683144	61684144	+	731.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1271.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	259.14	283.38	192.39	236.83	172.61	191.3	248.2	281.22	169.87
Merged-chr4-109136983-2	chr4	109136482	109137482	+	731.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355191, exon 1 of 21)	5' UTR (NM_001355191, exon 1 of 21)	931.0	NM_001355191	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	9.15	11.52	3.7	17.54	17.26	16.08	11.62	8.4	10.62
Merged-chr19-4149525-3	chr19	4149054	4150054	+	731.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011778, intron 2 of 10)	intron (NM_011778, intron 2 of 10)	891.0	NM_011778	23789.0	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	54.35	65.89	58.27	58.7	63.45	80.38	68.65	87.55	36.22
Merged-chr6-112930311-2	chr6	112929807	112930807	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	16959.0	NM_080448	259302.0	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	5.15	8.75	7.4	8.77	12.13	17.68	4.22	6.19	5.0
Merged-chr3-84325170-2	chr3	84324694	84325694	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-20419.0	NM_001271726	80890.0	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	2.29	3.23	1.85	6.75	9.33	12.86	6.34	2.21	0.0
Merged-chr7-75371109-2	chr7	75370611	75371611	+	731.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61849.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	9.15	4.61	7.4	6.07	5.6	8.04	5.28	0.88	6.25
Merged-chr17-44789138-2	chr17	44788641	44789641	+	731.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	11975.0	NM_178652	109115.0	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	34.32	24.42	30.52	15.52	16.33	20.9	10.56	6.63	6.25
Merged-chr4-47351683-2	chr4	47351207	47352207	+	731.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-1515.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	10.87	11.98	8.32	19.57	8.4	12.86	17.96	16.36	9.99
Merged-chr19-5631202-1	chr19	5630702	5631702	+	731.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6288.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	8.58	8.75	24.05	12.82	10.26	16.08	1.06	1.77	1.25
Merged-chr17-50512436-3	chr17	50511936	50512936	+	731.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	2889.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	98.97	100.91	69.37	75.57	92.84	57.87	121.46	105.24	43.09
Merged-chr7-129859880-2	chr7	129859380	129860380	+	731.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102285.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	8.01	7.83	7.4	6.75	17.26	12.86	4.22	2.65	0.0
Merged-chr17-65540847-4	chr17	65540325	65541325	+	731.795837	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	-43.0	NM_001289486	381107.0	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	5.72	3.69	6.47	4.05	1.4	1.61	11.62	8.4	1.25
Merged-chr2-132090009-3	chr2	132089525	132090525	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355431, intron 4 of 6)	intron (NM_001355431, intron 4 of 6)	55083.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	11.44	20.74	15.72	19.57	18.66	19.29	15.84	11.05	8.74
Merged-chrX-51017116-3	chrX	51016633	51017633	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172413, intron 1 of 2)	intron (NM_172413, intron 1 of 2)	885.0	NM_172413	72065.0	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	51.48	56.68	49.95	26.99	34.99	38.58	51.75	50.41	32.48
Merged-chr11-69655555-3	chr11	69655064	69656064	+	731.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009235, exon 1 of 2)	exon (NM_009235, exon 1 of 2)	527.0	NM_009235	20670.0	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	42.9	44.7	42.55	16.19	11.2	42.6	19.01	21.67	11.24
Merged-chr3-33801042-2	chr3	33800541	33801541	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025978, exon 2 of 10)	exon (NM_025978, exon 2 of 10)	858.0	NM_001290500	67120.0	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	36.04	43.77	23.12	42.51	50.85	59.48	42.25	45.54	30.6
Merged-chr9-58534951-2	chr9	58534452	58535452	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133983, intron 3 of 6)	intron (NM_133983, intron 3 of 6)	5988.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	2.29	3.23	1.85	0.0	1.4	1.61	2.11	0.0	0.0
Merged-chrX-74057462-1	chrX	74056962	74057962	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081979, intron 1 of 2)	intron (NM_001081979, intron 1 of 2)	28228.0	NM_010788	17257.0	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	21.74	24.88	21.27	24.29	16.79	27.33	21.12	19.01	17.49
Merged-chr7-128302375-2	chr7	128301863	128302863	+	731.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4232.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	7.44	2.3	11.1	14.84	7.0	9.65	9.51	6.19	9.37
Merged-chr18-68234729-3	chr18	68234191	68235191	+	731.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357444, intron 1 of 3)	intron (NM_001357444, intron 1 of 3)	6745.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	11.44	6.91	5.55	10.12	7.46	4.82	4.22	5.31	5.62
Merged-chr6-134792283-3	chr6	134791791	134792791	+	731.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_151454)	promoter-TSS (NR_151454)	-69.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	296.32	377.38	228.46	329.94	357.81	326.34	297.84	327.2	202.97
Merged-chr18-88772959-1	chr18	88772459	88773459	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121248.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	8.01	5.07	16.65	7.42	3.73	6.43	1.06	4.86	4.37
Merged-chr17-27989930-3	chr17	27989434	27990434	+	731.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 9 of 24)	intron (NM_181413, intron 9 of 24)	80628.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	6.86	3.23	5.55	2.7	2.8	3.22	0.0	1.33	8.12
Merged-chr15-36852605-1	chr15	36852105	36853105	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-55676.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	2.86	1.38	1.85	2.02	2.33	0.0	3.17	3.1	1.25
Merged-chr17-15774940-1	chr17	15774440	15775440	+	731.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51646.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	8.58	7.83	6.47	12.14	8.86	8.04	22.18	15.03	8.12
Merged-chr13-92320973-1	chr13	92320473	92321473	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	L1MA9|LINE|L1	-33810.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	4.0	2.3	0.0	5.4	1.4	3.22	4.22	6.19	0.62
Merged-chr2-84427502-1	chr2	84427002	84428002	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2236.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	41.19	38.71	26.82	31.04	23.33	20.9	21.12	40.68	23.11
Merged-chr8-117404085-1	chr8	117403585	117404585	+	731.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-48938.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	20.02	24.42	28.67	21.59	22.86	39.39	23.24	15.48	20.61
Merged-chr2-30408585-1	chr2	30408085	30409085	+	731.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007760, intron 4 of 13)	intron (NM_007760, intron 4 of 13)	7163.0	NM_007760	12908.0	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	30.89	26.26	34.22	17.54	8.86	31.35	23.24	21.22	13.74
Merged-chr2-45239884-2	chr2	45239409	45240409	+	731.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122467.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	248.84	270.94	136.89	159.23	120.83	127.0	110.9	146.36	120.53
Merged-chr10-86885119-2	chr10	86884630	86885630	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138673, intron 43 of 68)	intron (NM_138673, intron 43 of 68)	106125.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	196.21	277.85	164.64	232.1	250.98	263.64	304.18	449.24	172.99
Merged-chr2-169008868-2	chr2	169008371	169009371	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30602.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	10.3	11.98	14.8	15.52	18.19	12.86	16.9	18.13	7.49
Merged-chr14-122876378-2	chr14	122875889	122876889	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-36641.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	4.58	5.07	1.85	0.67	4.2	0.0	3.17	6.19	5.62
Merged-chr9-24395004-2	chr9	24394512	24395512	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108128.0	NM_001359948	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	17.73	13.36	10.17	8.1	9.8	21.7	8.45	12.82	14.36
Merged-chr8-88099656-2	chr8	88099140	88100140	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151771, intron 2 of 7)	intron (NR_151771, intron 2 of 7)	18967.0	NR_151771	100040328.0	Mm.56398	NR_151771		Gm2716	4933416k23	predicted gene 2716	ncRNA	15.45	19.35	23.12	6.07	7.0	16.08	21.12	22.99	13.12
Merged-chr1-172481303-2	chr1	172480797	172481797	+	731.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145800)	promoter-TSS (NM_001145800)	-916.0	NM_001145800	93842.0	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	10.3	5.53	5.55	8.1	6.06	10.45	21.12	7.07	14.99
Merged-chr6-129234610-2	chr6	129234106	129235106	+	731.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040268, intron 2 of 3)	intron (NR_040268, intron 2 of 3)	3439.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	89.24	76.95	155.39	93.11	47.58	86.81	115.12	86.66	97.43
Merged-chr12-100926427-3	chr12	100925917	100926917	+	731.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026681, intron 25 of 29)	intron (NM_026681, intron 25 of 29)	-18219.0	NM_001177673	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	29.75	17.05	20.35	26.31	22.39	20.09	29.57	22.55	14.99
Merged-chr7-31125543-2	chr7	31125065	31126065	+	731.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	1458.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	17.16	17.05	11.1	11.47	19.13	9.65	12.67	12.82	18.74
Merged-chr1-175620008-2	chr1	175619524	175620524	+	731.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010209, intron 1 of 9)	RMER19B|LTR|ERVK	5611.0	NM_010209	14194.0	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	2.29	2.3	3.7	11.47	7.0	6.43	3.17	4.42	6.25
Merged-chr3-146345386-3	chr3	146344888	146345888	+	731.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33556.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	3.43	2.76	0.0	4.05	2.8	1.61	2.11	2.65	4.37
Merged-chr1-155416323-2	chr1	155415816	155416816	+	731.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1128.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	54.92	73.73	53.65	59.38	56.45	34.56	94.0	93.74	40.59
Merged-chr16-94329510-2	chr16	94329063	94330063	+	731.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	1141.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	28.03	34.1	37.92	58.7	36.85	32.96	50.7	41.12	9.37
Merged-chr17-56242179-2	chr17	56241665	56242665	+	731.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029827)	promoter-TSS (NR_029827)	449.0	NR_155493	320593.0	Mm.125338	NR_155493		A230051N06Rik	-	RIKEN cDNA A230051N06 gene	ncRNA	1.72	3.23	1.85	2.7	2.8	3.22	3.17	0.88	2.5
Merged-chr6-127272817-3	chr6	127272284	127273284	+	731.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35183.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	7.44	1.38	0.0	0.0	0.47	0.0	6.34	1.33	1.25
Merged-chr17-46032629-3	chr17	46032099	46033099	+	731.555542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287058)	promoter-TSS (NM_001287058)	-222.0	NM_001287057	22339.0	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	7.44	4.61	2.77	3.37	1.87	3.22	3.17	0.88	1.25
Merged-chr12-52501130-2	chr12	52500633	52501633	+	731.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14944.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	8.58	13.36	6.47	7.42	5.13	3.22	22.18	24.32	20.61
Merged-chrX-157801882-2	chrX	157801389	157802389	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16546.0	NM_001081667	245683.0	Mm.295846	NM_001081667	ENSMUSG00000047485	Klhl34	Gm388	kelch-like 34	protein-coding	1.72	1.84	0.0	0.67	2.33	3.22	4.22	0.0	1.25
Merged-chr4-155895401-1	chr4	155894901	155895901	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207223, intron 1 of 24)	intron (NM_207223, intron 1 of 24)	3526.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	24.03	23.5	10.17	30.36	26.59	45.82	9.51	0.44	2.5
Merged-chr1-95366424-2	chr1	95365925	95366925	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	52797.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	25.17	35.48	20.35	35.09	31.72	20.09	33.8	34.05	33.1
Merged-chr10-87690979-3	chr10	87690433	87691433	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167332.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	14.87	6.91	4.62	11.47	3.73	1.61	10.56	5.75	6.25
Merged-chr14-31373014-2	chr14	31372509	31373509	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011894, exon 9 of 9)	3' UTR (NM_011894, exon 9 of 9)	36371.0	NM_009796	12339.0	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	21.74	28.57	10.17	22.94	19.13	28.94	21.12	17.69	12.49
Merged-chr13-64929241-2	chr13	64928746	64929746	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11840.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	7.44	1.84	0.0	4.05	2.8	4.82	0.0	1.33	3.75
Merged-chr17-56611538-2	chr17	56611037	56612037	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1766.0	NM_153152	224904.0	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	23.45	25.8	47.17	12.14	23.79	41.8	35.91	24.76	38.72
Merged-chr13-110866858-1	chr13	110866358	110867358	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36641.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	0.0	1.38	3.7	1.35	0.0	0.0	3.17	4.42	3.75
Merged-chr11-77460724-1	chr11	77460224	77461224	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291190)	TTS (NM_001291190)	-3189.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	8.01	6.91	1.85	6.07	4.2	12.86	6.34	2.65	7.49
Merged-chr4-41136549-3	chr4	41136027	41137027	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	506.0	NM_026275	67615.0	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	53.2	47.0	66.6	82.32	56.91	90.83	110.9	55.27	68.07
Merged-chr13-12409333-2	chr13	12408845	12409845	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144835, intron 14 of 44)	intron (NM_144835, intron 14 of 44)	13970.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	102.4	111.97	76.77	129.55	98.9	127.0	127.8	109.66	86.18
Merged-chr5-21384772-2	chr5	21384284	21385284	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	12111.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	22.31	15.67	12.95	15.52	11.66	21.7	29.57	24.32	16.86
Merged-chr1-127776262-1	chr1	127775762	127776762	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	intron (NM_028399, intron 2 of 8)	2098.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	46.34	71.42	46.25	38.46	39.19	39.39	85.55	67.65	62.45
Merged-chr5-110211489-2	chr5	110211005	110212005	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347389, intron 17 of 23)	MTB_Mm|LTR|ERVL-MaLR	-19499.0	NM_001253814	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	8.58	5.53	7.4	2.7	5.13	19.29	9.51	5.31	8.74
Merged-chr19-17356484-3	chr19	17356028	17357028	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	CpG	139.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	43.48	54.83	38.85	39.81	34.52	38.58	27.46	26.97	18.74
Merged-chr2-28418241-2	chr2	28417745	28418745	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29696.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	3.43	0.46	0.92	2.7	0.0	3.22	2.11	0.0	1.87
Merged-chr8-80753496-2	chr8	80753011	80754011	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14052.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	3.43	3.69	3.7	6.07	2.33	1.61	2.11	3.1	1.87
Merged-chr14-51941915-2	chr14	51941405	51942405	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19132.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	249.99	288.91	153.54	170.7	160.48	163.17	97.17	84.45	52.46
Merged-chr18-38385162-4	chr18	38384674	38385674	+	731.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33733.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	24.6	43.31	32.37	50.6	61.11	57.07	64.43	44.22	31.85
Merged-chr3-61412789-2	chr3	61412348	61413348	+	731.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48341.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	30.89	47.92	13.87	74.89	56.91	50.64	117.24	134.42	53.08
Merged-chr3-104995885-3	chr3	104995334	104996334	+	731.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34125.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	65.21	51.15	43.47	43.18	32.66	50.64	46.47	35.37	26.23
Merged-chr4-3629040-3	chr4	3628538	3629538	+	731.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27468.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	28.03	33.18	23.12	27.66	14.0	11.25	34.85	31.84	34.97
Merged-chr9-72991649-2	chr9	72991145	72992145	+	731.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359295, intron 1 of 9)	intron (NM_001359295, intron 1 of 9)	6141.0	NM_001286544	72278.0	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	6.86	12.9	10.17	8.77	3.27	8.04	7.39	5.75	9.37
Merged-chr10-10733311-2	chr10	10732807	10733807	+	731.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114333, intron 6 of 9)	intron (NM_001114333, intron 6 of 9)	-17739.0	NR_046010	78056.0	Mm.271285	NR_046010	ENSMUSG00000112730	4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	1.14	3.23	6.47	1.35	3.27	3.22	4.22	3.1	1.25
Merged-chr14-65598464-2	chr14	65597962	65598962	+	731.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5350.0	NM_028811	74195.0	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	4.58	4.15	0.0	2.7	3.73	4.02	5.28	2.65	1.25
Merged-chr11-98700202-2	chr11	98699720	98700720	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1093.0	NM_009971	12985.0	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	4.58	3.23	4.62	4.05	0.93	3.22	2.11	0.88	5.62
Merged-chr15-73505949-2	chr15	73505457	73506457	+	731.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6603.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	8.01	5.07	5.55	4.05	2.8	6.43	5.28	3.98	5.0
Merged-chr1-51498651-2	chr1	51498151	51499151	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-20252.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	24.03	25.8	24.05	19.57	23.33	42.6	34.85	32.28	21.86
Merged-chr11-95146261-2	chr11	95145744	95146744	+	731.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007867)	promoter-TSS (NM_007867)	-443.0	NM_007867	13394.0	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	5.72	2.76	7.4	6.07	0.47	3.22	0.0	0.44	5.0
Merged-chr8-128709439-2	chr8	128708944	128709944	+	731.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010578, intron 3 of 15)	B3|SINE|B2	23790.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	12.01	12.44	2.77	10.8	5.6	11.25	7.39	8.84	4.37
Merged-chr3-146685075-1	chr3	146684575	146685575	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-33758.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	6.86	7.83	0.92	18.22	8.4	17.68	12.67	5.31	3.12
Merged-chr2-93450867-3	chr2	93450362	93451362	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	1810.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	19.45	11.98	10.17	14.17	4.67	8.04	12.67	7.07	9.99
Merged-chr10-81411871-1	chr10	81411371	81412371	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152732)	TTS (NR_152732)	2296.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	47.48	42.85	25.9	49.93	28.46	46.62	42.25	34.93	34.97
Merged-chr7-126260981-1	chr7	126260481	126261481	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360811, intron 1 of 3)	intron (NM_001360811, intron 1 of 3)	-11515.0	NM_145587	104175.0	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	4.0	2.3	0.0	4.72	0.93	2.41	0.0	3.54	4.37
Merged-chr7-80857365-3	chr7	80856882	80857882	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_009553	22691.0	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	2.86	2.3	0.0	4.72	4.2	3.22	7.39	1.33	3.75
Merged-chr7-114817716-3	chr7	114817213	114818213	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	71947.0	NM_173767	233752.0	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	INSC spindle orientation adaptor protein	protein-coding	0.57	0.46	3.7	2.7	0.47	6.43	1.06	0.88	1.87
Merged-chr2-18677780-2	chr2	18677282	18678282	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007552, intron 1 of 9)	intron (NM_007552, intron 1 of 9)	764.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	29.75	21.66	10.17	21.59	17.26	10.45	35.91	17.69	11.24
Merged-chr17-79971475-3	chr17	79970976	79971976	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75353.0	NM_001286647	56298.0	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	3.43	1.38	1.85	2.7	5.13	2.41	5.28	5.31	2.5
Merged-chr13-20125199-3	chr13	20124677	20125677	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	34670.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	42.33	48.84	34.22	44.53	27.06	13.66	46.47	40.24	29.98
Merged-chr3-116341196-3	chr3	116340684	116341684	+	731.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	13060.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	1.72	2.3	1.85	1.35	1.4	3.22	3.17	2.65	1.25
Merged-chr12-100079913-1	chr12	100079413	100080413	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32418.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	14.3	7.37	18.5	8.1	7.93	8.04	9.51	6.19	9.99
Merged-chr5-24360938-1	chr5	24360438	24361438	+	731.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3881.0	NM_008713	18127.0	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	2.86	0.46	0.0	2.02	0.0	2.41	1.06	2.21	1.25
Merged-chr19-16149271-3	chr19	16148782	16149782	+	731.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-14816.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	21.17	35.02	31.45	26.99	23.79	31.35	33.8	29.63	28.73
Merged-chr2-30134656-3	chr2	30134145	30135145	+	731.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146252, intron 1 of 11)	intron (NM_146252, intron 1 of 11)	899.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	147.59	136.85	167.42	150.46	121.76	169.6	213.35	254.25	124.28
Merged-chr2-52762722-3	chr2	52762255	52763255	+	731.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20606.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	23.45	20.74	31.45	24.29	23.79	21.7	36.97	47.31	21.23
Merged-chr5-93129668-3	chr5	93129155	93130155	+	731.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	36239.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	7.44	3.23	1.85	6.07	5.6	8.84	8.45	7.07	12.49
Merged-chr1-45872375-2	chr1	45871871	45872871	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53223.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	53.2	51.61	39.77	51.95	54.58	73.95	66.54	65.88	47.46
Merged-chr14-93729084-2	chr14	93728577	93729577	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	161592.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	2.86	2.3	3.7	2.7	1.4	2.41	5.28	2.65	5.62
Merged-chr2-60948373-2	chr2	60947869	60948869	+	731.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	14835.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.58	5.53	3.7	4.72	3.27	4.02	5.28	4.42	3.12
Merged-chr12-70110829-2	chr12	70110318	70111318	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286079, intron 1 of 28)	intron (NM_001286079, intron 1 of 28)	811.0	NR_104398	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	29.75	30.41	40.7	33.06	28.92	33.76	22.18	24.32	7.49
Merged-chr17-78679620-2	chr17	78679127	78680127	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 6 of 17)	Lx10|LINE|L1	56933.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	16.59	11.52	8.32	16.19	14.93	13.66	6.34	3.1	1.87
Merged-chr10-120191373-1	chr10	120190873	120191873	+	731.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	10224.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	2.86	6.91	0.0	2.02	2.33	0.0	10.56	10.61	14.36
Merged-chr17-67055852-2	chr17	67055356	67056356	+	731.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 5 of 32)	intron (NM_001357625, intron 5 of 32)	-29621.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	5.72	0.92	1.85	4.05	5.13	1.61	4.22	5.75	6.25
Merged-chr6-29557302-3	chr6	29556785	29557785	+	731.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177296, intron 17 of 22)	A-rich|Low_complexity|Low_complexity	28003.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	33.18	41.93	36.07	17.54	11.2	20.09	35.91	43.77	22.48
Merged-chr2-125122391-3	chr2	125121876	125122876	+	731.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162418, intron 1 of 14)	intron (NM_001162418, intron 1 of 14)	1284.0	NM_001162417	17876.0	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	8.58	7.37	2.77	15.52	14.0	1.61	10.56	12.38	6.25
Merged-chr9-22326193-3	chr9	22325725	22326725	+	731.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4465.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	43.48	46.08	32.37	47.9	47.12	21.7	81.33	76.49	63.08
Merged-chr2-58532405-3	chr2	58531923	58532923	+	731.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110204, intron 2 of 12)	intron (NM_001110204, intron 2 of 12)	28987.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	5.72	7.83	8.32	8.1	8.4	10.45	11.62	9.29	5.0
Merged-chr12-36155303-2	chr12	36154810	36155810	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	1515.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	5.72	6.45	3.7	6.07	1.87	2.41	4.22	7.96	0.0
Merged-chrX-106130103-2	chrX	106129622	106130622	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-13153.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	26.89	31.33	35.15	31.71	21.46	42.6	14.79	24.32	18.11
Merged-chr18-54294876-3	chr18	54294385	54295385	+	731.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR53_Mm|LTR|ERVK	-127410.0	NR_040338	77433.0	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	8.58	5.53	1.85	9.45	6.53	6.43	2.11	1.33	6.87
Merged-chr15-53349105-2	chr15	53348605	53349605	+	731.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-2922.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.58	11.06	3.7	8.1	4.2	3.22	7.39	10.17	9.99
Merged-chr9-7554554-3	chr9	7554044	7555044	+	731.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-3885.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	3.43	5.99	0.0	4.05	3.27	2.41	4.22	1.77	3.75
Merged-chr5-99476815-3	chr5	99476330	99477330	+	731.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-223903.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	30.89	31.33	22.2	31.71	38.72	35.37	17.96	12.82	2.5
Merged-chr11-108244442-2	chr11	108243937	108244937	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	99451.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	13.73	10.14	10.17	8.77	5.13	0.8	6.34	14.59	1.25
Merged-chr14-14002968-2	chr14	14002479	14003479	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9512.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	8.01	3.23	1.85	8.1	5.13	11.25	6.34	6.19	2.5
Merged-chr8-45337124-2	chr8	45336626	45337626	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153535, exon 14 of 14)	3' UTR (NM_153535, exon 14 of 14)	-3930.0	NM_133969	102294.0	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	14.87	11.06	7.4	10.8	8.86	3.22	11.62	3.1	6.25
Merged-chr10-117885538-2	chr10	117885035	117886035	+	731.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39561.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	15.45	16.13	34.22	16.87	9.8	15.27	26.4	17.24	14.99
Merged-chr3-35931898-1	chr3	35931398	35932398	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	436.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	80.66	84.78	75.85	103.91	106.36	103.69	128.85	118.06	49.34
Merged-chr7-100505243-3	chr7	100504755	100505755	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 5 of 7)	intron (NM_153527, intron 5 of 7)	9560.0	NM_153527	69387.0	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	18.88	10.14	10.17	22.94	14.0	19.29	104.56	137.07	59.95
Merged-chr11-115640591-1	chr11	115640091	115641091	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12296.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	110.41	55.75	70.3	103.23	53.18	38.58	77.1	76.94	40.59
Merged-chr2-129306697-2	chr2	129306198	129307198	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	3274.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	140.15	116.12	94.35	123.47	46.18	53.05	110.9	141.94	77.44
Merged-chr9-85342121-1	chr9	85341621	85342621	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14971.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	11.44	13.82	16.65	6.75	14.0	21.7	11.62	10.17	23.11
Merged-chr2-27595443-2	chr2	27594959	27595959	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80312.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	6.86	1.84	12.95	6.07	2.8	3.22	2.11	0.44	1.25
Merged-chr10-117033954-1	chr10	117033454	117034454	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11387.0	NM_146242	237560.0	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	1.72	1.38	0.0	4.72	2.8	0.0	0.0	1.77	3.75
Merged-chr2-145998260-2	chr2	145997766	145998766	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63482.0	NM_175280	78774.0	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	6.86	13.36	3.7	14.17	11.2	0.0	13.73	13.71	16.86
Merged-chr13-45392718-1	chr13	45392218	45393218	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	RSINE1|SINE|B4	2976.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	108.69	84.32	49.95	125.5	67.64	93.24	99.28	95.07	53.71
Merged-chr18-47945543-1	chr18	47945043	47946043	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22702.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	2.86	0.92	0.92	9.45	5.13	4.02	9.51	7.96	1.25
Merged-chr16-78473559-1	chr16	78473059	78474059	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-86757.0	NR_040569	75818.0	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	2.86	2.3	4.62	0.0	0.47	2.41	0.0	3.1	1.25
Merged-chr15-76758561-1	chr15	76758061	76759061	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 2 of 10)	intron (NM_198420, intron 2 of 10)	-34716.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	34.32	15.21	3.7	23.62	10.73	11.25	11.62	7.96	7.49
Merged-chr5-65697344-1	chr5	65696844	65697844	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081321, intron 1 of 31)	CpG-11111	512.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	201.93	133.17	233.09	149.79	156.28	135.04	192.23	115.85	102.42
Merged-chr12-36035813-2	chr12	36035297	36036297	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	6681.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	58.35	49.3	54.57	53.98	50.85	49.03	13.73	10.61	8.12
Merged-chr13-10686525-1	chr13	10686025	10687025	+	731.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-325722.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	1.14	4.15	1.85	1.35	2.8	8.04	4.22	2.21	8.74
Merged-chr19-56763883-1	chr19	56763383	56764383	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41511.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.58	3.69	7.4	3.37	4.2	2.41	2.11	4.42	6.25
Merged-chr11-50244656-2	chr11	50244148	50245148	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6116.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	52.63	35.94	31.45	85.01	42.45	69.13	73.93	54.83	44.97
Merged-chr1-53890525-2	chr1	53890024	53891024	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	41100.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	8.58	11.52	3.7	8.1	7.93	8.04	8.45	5.75	3.75
Merged-chr15-93318977-2	chr15	93318479	93319479	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	17956.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	11.44	5.99	5.55	7.42	6.06	4.82	3.17	3.98	6.25
Merged-chr6-114920783-2	chr6	114920287	114921287	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	1034.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	54.92	74.19	74.0	70.85	66.24	70.73	85.55	93.74	37.47
Merged-chr4-40144733-1	chr4	40144233	40145233	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	1468.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	22.88	24.42	20.35	10.8	12.13	27.33	24.29	14.15	11.24
Merged-chr5-125392376-1	chr5	125391876	125392876	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2359.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	570.34	698.55	391.26	580.26	807.99	405.11	612.59	1019.64	336.0
Merged-chr9-108343458-3	chr9	108342949	108343949	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4369.0	NM_001329527	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	78.37	44.7	35.15	56.0	26.59	67.52	65.48	44.22	50.59
Merged-chr10-12592164-2	chr10	12591660	12592660	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	MTD|LTR|ERVL-MaLR	269575.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	14.3	9.68	12.02	12.82	7.46	11.25	14.79	7.07	5.62
Merged-chr1-88228589-1	chr1	88228089	88229089	+	731.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 3 of 41)	intron (NM_001281466, intron 3 of 41)	1569.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	12.59	17.51	22.2	11.47	6.06	23.31	22.18	18.57	23.11
Merged-chr14-93701250-1	chr14	93700750	93701750	+	731.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189419.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	4.58	5.07	0.0	4.05	7.93	12.06	46.47	29.18	41.22
Merged-chr16-36654719-1	chr16	36654219	36655219	+	731.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	11358.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	14.3	16.13	9.25	16.87	7.46	4.02	12.67	12.38	18.11
Merged-chr10-125325340-2	chr10	125324830	125325830	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	3633.0	NM_011391	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	70.36	42.39	37.92	82.99	51.78	54.66	55.98	53.06	38.1
Merged-chr5-104509615-2	chr5	104509105	104510105	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166581, intron 1 of 1)	URR1B|DNA|hAT-Charlie	1253.0	NM_001166581	100042165.0	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	10.87	10.14	6.47	8.1	11.66	3.22	16.9	10.61	18.11
Merged-chr10-119610592-2	chr10	119610057	119611057	+	730.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	151142.0	NR_045359	75321.0	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	10.3	2.3	3.7	11.47	7.0	0.0	9.51	5.31	7.49
Merged-chr14-45047546-3	chr14	45046971	45047971	+	730.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	59360.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	30.89	26.73	14.8	25.64	15.86	30.54	30.63	16.8	23.73
Merged-chr7-3595375-2	chr7	3594876	3595876	+	730.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20781.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	8.01	4.15	5.55	4.05	7.0	0.0	4.22	6.19	3.75
Merged-chr13-49321649-2	chr13	49321149	49322149	+	730.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12441.0	NM_015759	30938.0	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	3.43	3.69	0.0	6.07	3.73	2.41	10.56	1.33	3.75
Merged-chr4-59864906-2	chr4	59864385	59865385	+	730.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 2 of 8)	intron (NM_172468, intron 2 of 8)	50171.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	49.77	61.75	67.52	57.35	65.78	48.23	43.3	38.91	41.22
Merged-chr4-42954575-2	chr4	42954093	42955093	+	730.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355439, intron 3 of 4)	intron (NM_001355439, intron 3 of 4)	4197.0	NM_001355440	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	7.44	5.07	0.0	8.77	4.2	4.82	9.51	3.98	8.74
Merged-chr3-55122618-3	chr3	55122090	55123090	+	730.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001144988, intron 3 of 7)	ORR1F|LTR|ERVL-MaLR	10424.0	NM_001144987	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	13.73	11.98	8.32	14.17	14.93	12.06	11.62	11.5	8.74
Merged-chr13-47215609-3	chr13	47215122	47216122	+	730.811096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	21619.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	63.5	76.49	56.42	80.29	76.04	108.51	81.33	68.98	50.59
Merged-chr7-116371754-3	chr7	116371260	116372260	+	730.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011083, intron 13 of 32)	intron (NM_011083, intron 13 of 32)	-37570.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	9.72	11.06	9.25	6.75	12.13	11.25	12.67	9.29	12.49
Merged-chr10-29357736-2	chr10	29357230	29358230	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001284279)	promoter-TSS (NM_001284279)	-17.0	NM_001284279	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	9.72	12.9	11.1	10.12	8.4	10.45	5.28	3.98	14.36
Merged-chr10-31557365-2	chr10	31556875	31557875	+	730.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	intron (NM_001146349, intron 1 of 5)	52350.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	12.59	6.45	8.32	6.75	3.27	5.63	5.28	7.96	6.87
Merged-chr5-39831393-2	chr5	39830878	39831878	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-186747.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	4.0	1.38	1.85	1.35	3.27	7.23	3.17	1.77	1.87
Merged-chr12-33035945-1	chr12	33035445	33036445	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56930.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	2.29	1.38	4.62	7.42	3.73	4.82	8.45	1.77	0.62
Merged-chr5-113619313-2	chr5	113618806	113619806	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	24297.0	NM_001359060	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	8.01	4.15	5.55	10.12	3.73	16.08	8.45	7.52	6.87
Merged-chr4-3774222-2	chr4	3773786	3774786	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	BGLII_B|LTR|ERVK	59322.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	33.18	26.26	18.5	31.04	27.52	33.76	33.8	38.91	31.85
Merged-chr6-57823681-2	chr6	57823186	57824186	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146168, intron 1 of 4)	intron (NM_146168, intron 1 of 4)	1439.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	89.24	93.54	64.75	62.07	35.45	88.42	67.6	73.4	48.71
Merged-chr4-135899262-2	chr4	135898764	135899764	+	730.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009924, intron 1 of 1)	intron (NM_009924, intron 1 of 1)	4075.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	11.44	11.06	9.25	25.64	29.39	8.84	25.35	13.71	5.0
Merged-chr4-131921670-2	chr4	131921174	131922174	+	730.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001201367)	promoter-TSS (NM_001201367)	-97.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	21.74	13.82	24.05	38.46	12.13	31.35	11.62	5.75	3.12
Merged-chr1-193905892-2	chr1	193905388	193906388	+	730.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	316871.0	NR_040477	74942.0	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	10.87	9.68	5.55	13.49	9.8	16.08	13.73	8.84	6.25
Merged-chr19-56731698-3	chr19	56731203	56732203	+	730.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9331.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	20.59	9.68	22.2	24.96	12.13	16.08	29.57	34.93	14.99
Merged-chr3-58517424-1	chr3	58516924	58517924	+	730.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8397.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	33.75	23.04	11.1	33.06	29.39	17.68	38.02	26.09	14.99
Merged-chr3-89515676-3	chr3	89515176	89516176	+	730.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4488.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	5.15	7.37	3.7	9.45	6.53	17.68	5.28	3.54	0.0
Merged-chr10-96171774-1	chr10	96171274	96172274	+	730.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-54433.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.86	6.45	14.8	8.77	7.0	12.86	12.67	9.73	24.98
Merged-chr14-77141806-2	chr14	77141276	77142276	+	730.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14987.0	NM_001253759	239188.0	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	4.58	0.92	0.0	1.35	3.73	1.61	2.11	1.77	0.0
Merged-chr10-19012743-3	chr10	19012230	19013230	+	730.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166402)	promoter-TSS (NM_001166402)	-767.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	73.22	88.47	32.37	18.89	25.19	20.09	55.98	54.39	58.71
Merged-chr15-5738316-2	chr15	5737815	5738815	+	730.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL1|LINE|L1	241997.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	11.44	4.15	7.4	11.47	6.06	6.43	13.73	7.96	3.75
Merged-chr8-27177365-2	chr8	27176877	27177877	+	730.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2731.0	NM_001080813	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	9.72	5.99	12.95	13.49	3.73	8.04	10.56	6.19	6.25
Merged-chr4-34494582-2	chr4	34494089	34495089	+	730.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56026.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	15.45	23.04	19.42	17.54	17.26	30.54	15.84	18.57	11.87
Merged-chr10-41896583-3	chr10	41896083	41897083	+	730.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013370, intron 4 of 9)	L1MC2|LINE|L1	9144.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	8.01	4.15	7.4	14.84	11.2	8.84	10.56	12.38	8.74
Merged-chr4-155654543-2	chr4	155654039	155655039	+	730.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001256107)	TTS (NM_001256107)	-1155.0	NM_011985	26561.0	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	9.15	3.69	3.7	5.4	0.93	6.43	4.22	2.65	1.87
Merged-chr15-100457546-3	chr15	100457035	100458035	+	730.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11476.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	4.0	7.37	6.47	2.02	3.27	0.8	6.34	5.31	2.5
Merged-chr2-165927561-3	chr2	165927069	165928069	+	730.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42731.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	103.54	84.32	76.77	105.26	57.85	75.56	51.75	28.3	11.24
Merged-chr10-105957651-3	chr10	105957146	105958146	+	730.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	116167.0	NM_025602	52713.0	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	13.16	13.82	7.4	6.07	8.86	9.65	1.06	2.65	2.5
Merged-chr14-105328641-2	chr14	105328146	105329146	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69973.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	14.87	10.14	20.35	12.82	5.6	13.66	14.79	13.27	7.49
Merged-chr4-59360894-2	chr4	59360387	59361387	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	L1MC4|LINE|L1	77746.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	38.33	25.8	23.12	31.04	37.79	32.15	15.84	22.11	13.74
Merged-chr2-34600052-2	chr2	34599556	34600556	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290625, intron 10 of 11)	intron (NM_001290625, intron 10 of 11)	155176.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	10.3	7.83	9.25	7.42	4.67	8.04	7.39	4.86	2.5
Merged-chr9-90162840-1	chr9	90162340	90163340	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001326294)	promoter-TSS (NM_001326294)	-138.0	NM_001003911	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	2.29	0.0	4.62	5.4	1.4	4.82	1.06	0.88	0.0
Merged-chr10-117842162-1	chr10	117841662	117842662	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	3812.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	142.44	168.65	102.67	112.0	78.37	87.61	155.26	157.41	88.06
Merged-chr1-169444778-1	chr1	169444278	169445278	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1E3|LTR|ERVL-MaLR	86686.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	4.58	2.76	3.7	2.7	0.0	6.43	0.0	1.33	2.5
Merged-chr7-130009202-2	chr7	130008701	130009701	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47036.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.0	6.45	9.25	4.05	3.73	6.43	12.67	7.07	1.87
Merged-chr13-46670253-1	chr13	46669753	46670753	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033192, exon 1 of 5)	exon (NM_001033192, exon 1 of 5)	731.0	NM_001033192	97863.0	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	36.04	24.42	28.67	37.11	13.06	29.74	34.85	16.36	6.25
Merged-chr9-121572046-2	chr9	121571555	121572555	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14965.0	NR_040740	75384.0	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	15.45	17.97	18.5	14.84	20.06	32.15	19.01	14.15	33.72
Merged-chr12-76177210-1	chr12	76176710	76177710	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_104386)	promoter-TSS (NR_104386)	49.0	NM_010157	13983.0	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	4.0	1.84	0.0	5.4	2.33	6.43	0.0	2.65	2.5
Merged-chr10-23081388-2	chr10	23080896	23081896	+	730.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-261268.0	NM_011545	21412.0	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	2.29	4.15	1.85	1.35	3.73	1.61	3.17	1.33	0.0
Merged-chr11-103214435-2	chr11	103213938	103214938	+	730.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177801, intron 1 of 4)	Lx5b|LINE|L1	3994.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	6.86	5.99	7.4	6.75	1.87	6.43	6.34	7.52	1.25
Merged-chr7-139979610-3	chr7	139979115	139980115	+	730.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347613)	promoter-TSS (NM_001347613)	-860.0	NM_001347613	381933.0	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	22.88	4.15	9.25	29.01	16.79	36.97	4.22	5.31	1.87
Merged-chr11-35833461-3	chr11	35832974	35833974	+	730.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025936, intron 1 of 14)	intron (NM_025936, intron 1 of 14)	1054.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	34.9	46.08	38.85	41.83	39.65	20.9	67.6	50.41	34.97
Merged-chr15-83564369-3	chr15	83563859	83564859	+	730.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009775, intron 1 of 3)	intron (NM_009775, intron 1 of 3)	786.0	NM_009775	12257.0	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	29.17	19.81	40.7	30.36	27.99	16.88	30.63	19.01	9.37
Merged-chr16-24973167-2	chr16	24972666	24973666	+	730.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 11 of 12)	intron (NM_178665, intron 11 of 12)	-86473.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	9.15	14.75	9.25	28.34	27.52	24.92	38.02	29.18	18.74
Merged-chr5-114620443-3	chr5	114619940	114620940	+	730.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37981.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	4.58	2.3	0.0	2.7	2.33	0.0	3.17	1.33	3.12
Merged-chr6-29544101-2	chr6	29543609	29544609	+	730.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177296, intron 21 of 22)	intron (NM_177296, intron 21 of 22)	14827.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	20.59	17.05	24.05	31.04	26.59	17.68	34.85	25.2	18.74
Merged-chr18-62045178-2	chr18	62044664	62045664	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92089.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	62.35	62.67	57.35	77.59	57.38	57.87	77.1	110.1	79.94
Merged-chr14-31662183-2	chr14	31661691	31662691	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025295, exon 2 of 4)	exon (NM_025295, exon 2 of 4)	21134.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	17.16	11.98	11.1	24.96	17.73	32.15	23.24	17.69	12.49
Merged-chr5-64341857-2	chr5	64341356	64342356	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	L1ME4c|LINE|L1	111499.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	114.98	127.18	101.74	120.77	123.16	115.75	123.57	170.68	113.04
Merged-chr18-9493458-2	chr18	9492974	9493974	+	730.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43320.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	32.61	20.74	1.85	66.12	52.72	16.08	51.75	33.6	1.25
Merged-chr6-51743608-1	chr6	51743108	51744108	+	730.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198315.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	20.02	52.07	24.05	12.82	22.39	24.11	38.02	38.47	20.61
Merged-chr13-56626700-3	chr13	56626200	56627200	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155548, intron 6 of 16)	L3b|LINE|CR1	17114.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	9.72	5.99	5.55	8.77	5.13	8.84	7.39	7.96	3.75
Merged-chr5-34544293-3	chr5	34543791	34544791	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145858, intron 1 of 12)	intron (NM_001145858, intron 1 of 12)	926.0	NM_001145858	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	60.07	35.48	49.95	33.74	32.19	57.07	67.6	41.56	35.6
Merged-chr7-5064241-3	chr7	5063747	5064747	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205231, intron 1 of 11)	intron (NM_001205231, intron 1 of 11)	2104.0	NM_001205231	22185.0	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	47.48	64.97	48.1	45.21	35.45	47.42	38.02	40.24	28.1
Merged-chr2-27418276-3	chr2	27417785	27418785	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	9323.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	132.72	117.96	91.57	118.75	102.63	126.19	126.74	108.33	64.33
Merged-chr1-125428601-3	chr1	125428114	125429114	+	730.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	7113.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	41.19	27.19	22.2	43.86	23.79	43.4	41.19	31.39	24.36
Merged-chr10-127634665-3	chr10	127634181	127635181	+	730.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-8305.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	99.54	71.88	52.72	118.75	53.65	113.33	89.78	79.59	53.08
Merged-chr1-95468300-2	chr1	95467799	95468799	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	154671.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	8.58	7.83	14.8	11.47	5.6	23.31	12.67	7.07	5.0
Merged-chr5-137095388-2	chr5	137094880	137095880	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20827.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	6.86	3.69	5.55	8.77	5.13	4.82	9.51	2.21	3.75
Merged-chr3-129823504-2	chr3	129823000	129824000	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009102)	promoter-TSS (NM_009102)	-995.0	NM_009102	20132.0	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	5.15	3.23	1.85	2.7	2.33	3.22	2.11	1.33	5.0
Merged-chr9-99062712-2	chr9	99062216	99063216	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 14 of 23)	intron (NM_029094, intron 14 of 23)	-27026.0	NM_001080776	382097.0	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	4.58	3.23	4.62	7.42	1.87	3.22	3.17	2.21	2.5
Merged-chr11-6628742-2	chr11	6628222	6629222	+	730.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2655.0	NM_134011	21379.0	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	10.87	17.05	24.05	13.49	9.33	20.9	15.84	20.78	32.48
Merged-chr2-138311096-3	chr2	138310606	138311606	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32613.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.86	9.68	1.85	4.05	2.33	1.61	3.17	1.33	4.37
Merged-chr4-140684621-3	chr4	140684086	140685086	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16887.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.0	4.15	7.4	4.05	2.8	3.22	4.22	0.88	0.0
Merged-chr18-35740146-3	chr18	35739654	35740654	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028261, intron 1 of 7)	intron (NM_028261, intron 1 of 7)	400.0	NM_028261	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	51.48	50.69	57.35	46.56	44.32	36.17	49.64	39.8	33.72
Merged-chr13-56774477-3	chr13	56773985	56774985	+	730.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302372, intron 11 of 11)	intron (NM_001302372, intron 11 of 11)	70817.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	2.29	4.15	1.85	2.7	3.73	1.61	4.22	0.44	1.25
Merged-chr7-126135616-2	chr7	126135113	126136113	+	730.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 9 of 23)	intron (NM_028816, intron 9 of 23)	-53202.0	NM_001358885	269994.0	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	86.38	103.22	49.02	74.89	73.24	58.68	88.72	58.81	42.47
Merged-chr9-98298987-3	chr9	98298477	98299477	+	730.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	2407.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	6.29	4.61	1.85	8.1	6.06	15.27	2.11	4.42	6.25
Merged-chr9-124118683-3	chr9	124118198	124119198	+	730.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2845.0	NM_009917	12774.0	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	8.01	11.52	10.17	10.12	12.13	12.06	9.51	15.48	11.24
Merged-chr3-60511533-3	chr3	60510998	60511998	+	730.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	10319.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	30.89	49.3	35.15	14.84	7.0	23.31	34.85	38.03	26.85
Merged-chr14-63412260-2	chr14	63411775	63412775	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4912.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	70.36	64.97	46.25	51.95	81.64	61.09	82.38	60.13	29.35
Merged-chr15-84942824-3	chr15	84942314	84943314	+	730.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016714, exon 8 of 8)	3' UTR (NM_016714, exon 8 of 8)	8809.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	11.44	17.05	11.1	15.52	23.79	27.33	23.24	20.34	13.74
Merged-chr8-84813245-2	chr8	84812751	84813751	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9572.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	4.0	1.84	4.62	3.37	1.4	1.61	2.11	3.54	3.12
Merged-chr17-87181858-2	chr17	87181344	87182344	+	730.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13098.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	8.58	3.69	3.7	10.8	8.86	9.65	8.45	10.61	7.49
Merged-chr2-28699887-3	chr2	28699361	28700361	+	730.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027283)	promoter-TSS (NM_027283)	-210.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	28.03	29.03	28.67	28.34	26.12	24.11	26.4	20.78	14.36
Merged-chr13-83524318-2	chr13	83523808	83524808	+	730.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	-435.0	NM_001347567	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	9.15	3.69	0.0	22.27	7.0	9.65	2.11	1.77	2.5
Merged-chr11-77494350-3	chr11	77493819	77494819	+	730.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	907.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	18.31	18.43	22.2	22.27	16.33	15.27	10.56	19.46	18.11
Merged-chr19-34637082-3	chr19	34636605	34637605	+	730.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053217, intron 1 of 2)	Lx5|LINE|L1	3638.0	NM_053217	112419.0	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	8.01	2.3	0.0	4.72	1.4	1.61	2.11	1.77	2.5
Merged-chr11-120749610-3	chr11	120749117	120750117	+	730.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17596.0	NM_007621	12409.0	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	4.0	7.37	2.77	4.72	3.27	0.0	3.17	2.65	1.25
Merged-chr5-124438474-3	chr5	124437987	124438987	+	730.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1443.0	NM_030241	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	16.02	22.12	27.75	15.52	20.53	40.19	21.12	20.34	28.1
Merged-chr17-22431870-1	chr17	22431370	22432370	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198003, intron 2 of 6)	intron (NM_198003, intron 2 of 6)	7668.0	NM_001331198	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	4.0	4.15	3.7	6.07	4.2	6.43	3.17	3.1	2.5
Merged-chr2-90552693-2	chr2	90552227	90553227	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L4_A_Mam|LINE|RTE-X	27920.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	20.02	31.79	20.35	18.89	31.26	45.82	25.35	25.65	24.36
Merged-chr10-76513398-2	chr10	76512896	76513896	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019434, intron 28 of 28)	MTD-int|LTR|ERVL-MaLR	-18209.0	NM_146006	16987.0	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0.0	0.92	1.85	3.37	4.2	3.22	2.11	5.31	3.75
Merged-chr13-95961277-1	chr13	95960777	95961777	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029210, exon 13 of 13)	3' UTR (NM_029210, exon 13 of 13)	-69355.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	13.73	11.06	1.85	43.18	40.59	17.68	238.7	240.98	109.92
Merged-chr3-96598315-1	chr3	96597815	96598815	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1679.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	8.01	6.45	5.55	16.19	4.2	3.22	8.45	5.75	7.49
Merged-chr3-31110338-1	chr3	31109838	31110838	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	intron (NM_001039090, intron 2 of 6)	15280.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	10.3	11.06	9.25	8.77	5.13	8.04	11.62	5.75	10.62
Merged-chr9-45395231-1	chr9	45394731	45395731	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_022004, exon 8 of 8)	3' UTR (NM_022004, exon 8 of 8)	-4478.0	NR_028499	11936.0	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	17.73	11.52	1.85	15.52	4.67	8.84	7.39	3.1	3.75
Merged-chr1-92973762-1	chr1	92973262	92974262	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001104529, intron 1 of 1)	intron (NM_001104529, intron 1 of 1)	643.0	NM_001104529	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	101.83	87.55	110.07	114.7	104.5	148.7	134.14	159.18	116.16
Merged-chr16-19967201-2	chr16	19966704	19967704	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 1 of 6)	ORR1E|LTR|ERVL-MaLR	15845.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	9.15	11.06	16.65	10.8	12.6	24.92	13.73	9.73	5.0
Merged-chr8-8973573-1	chr8	8973073	8974073	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	158715.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	6.86	4.15	0.0	3.37	4.67	0.0	2.11	1.77	0.62
Merged-chr17-78604128-1	chr17	78603628	78604628	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197028, intron 8 of 12)	intron (NM_001197028, intron 8 of 12)	96065.0	NM_028813	74199.0	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	0.57	3.23	1.85	3.37	3.27	4.02	3.17	4.42	0.0
Merged-chr9-25522714-2	chr9	25522224	25523224	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	41127.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	12.01	12.9	4.62	14.84	8.4	4.02	16.9	9.29	8.74
Merged-chr13-21783878-3	chr13	21783415	21784415	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178207)	promoter-TSS (NM_178207)	-518.0	NM_178207	319153.0	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	62.35	114.27	69.37	55.33	87.24	71.54	133.08	198.09	78.07
Merged-chr17-71966426-1	chr17	71965926	71966926	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007439, intron 9 of 28)	intron (NM_007439, intron 9 of 28)	184479.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.29	0.92	3.7	3.37	1.87	5.63	0.0	3.1	4.37
Merged-chr19-17137021-1	chr19	17136521	17137521	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	180903.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	5.15	5.99	1.85	17.54	17.73	16.08	4.22	2.65	13.74
Merged-chr7-114460040-1	chr7	114459540	114460540	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	Lx5b|LINE|L1	44786.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	6.86	5.07	1.85	5.4	7.0	6.43	9.51	7.52	5.0
Merged-chr8-75196322-1	chr8	75195822	75196822	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17622.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	9.72	3.23	3.7	8.1	1.87	3.22	4.22	5.31	3.75
Merged-chr14-122049288-1	chr14	122048788	122049788	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14614.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	5.15	2.76	1.85	2.7	2.33	0.8	6.34	7.96	7.49
Merged-chr2-45103014-1	chr2	45102514	45103514	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	7263.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	53.2	36.4	38.85	56.0	35.92	41.8	48.58	40.68	56.83
Merged-chr8-24546444-2	chr8	24545929	24546929	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145949, intron 7 of 9)	intron (NM_145949, intron 7 of 9)	29904.0	NM_145949	209176.0	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	1.14	3.23	5.55	2.02	4.2	1.61	1.06	1.33	3.12
Merged-chr2-44963300-1	chr2	44962800	44963800	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	59877.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	20.02	9.68	14.8	13.49	8.86	20.09	11.62	6.19	5.62
Merged-chr5-114915973-1	chr5	114915473	114916473	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-7267.0	NM_001359946	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	2.86	2.76	5.55	4.72	5.13	1.61	3.17	3.54	5.0
Merged-chr4-135382532-1	chr4	135382032	135383032	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	3140.0	NM_001168498	230822.0	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	5.72	6.45	0.0	3.37	0.93	4.82	2.11	0.0	2.5
Merged-chr11-22807607-2	chr11	22807099	22808099	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	52136.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	9.15	9.68	4.62	8.1	9.33	12.86	8.45	4.42	13.12
Merged-chr2-77202156-1	chr2	77201656	77202656	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 10 of 17)	intron (NM_175465, intron 10 of 17)	-31521.0	NM_001025576	545428.0	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI	coiled-coil domain containing 141	protein-coding	5.15	4.15	0.0	10.8	7.0	4.02	5.28	4.42	6.25
Merged-chr11-79125992-1	chr11	79125492	79126492	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	RSINE1|SINE|B4	20481.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	10.87	5.53	1.85	9.45	6.06	7.23	4.22	1.77	2.5
Merged-chr3-101012301-1	chr3	101011801	101012801	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167906, intron 5 of 8)	intron (NM_001167906, intron 5 of 8)	17194.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	6.86	5.99	3.7	3.37	4.67	3.22	5.28	3.54	8.74
Merged-chr3-54111355-1	chr3	54110855	54111855	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44702.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	1.14	3.23	0.0	0.67	4.67	4.02	4.22	3.54	9.99
Merged-chr12-44548147-1	chr12	44547647	44548647	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146031, intron 10 of 27)	intron (NM_001146031, intron 10 of 27)	219262.0	NM_001146031	319504.0	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	7.44	0.46	3.7	1.35	0.93	4.82	5.28	0.0	5.0
Merged-chr10-28485831-1	chr10	28485331	28486331	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 11 of 30)	intron (NM_001359356, intron 11 of 30)	-182529.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	2.86	2.76	0.0	1.35	4.67	0.0	1.06	5.31	5.0
Merged-chr2-129599503-2	chr2	129598999	129599999	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4037.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	49.77	52.53	57.35	66.12	40.59	54.66	58.09	47.75	53.71
Merged-chr18-67290513-3	chr18	67290021	67291021	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	1298.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	7.44	7.83	7.4	12.14	4.67	8.04	14.79	10.17	6.87
Merged-chr19-46444455-1	chr19	46443955	46444955	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 3 of 11)	intron (NM_001025391, intron 3 of 11)	47559.0	NM_015752	24069.0	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	SUFU negative regulator of hedgehog signaling	protein-coding	0.57	2.76	2.77	2.7	2.33	3.22	2.11	2.65	1.25
Merged-chr12-80358023-1	chr12	80357523	80358523	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177267, intron 7 of 8)	intron (NM_177267, intron 7 of 8)	33654.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	6.29	10.14	16.65	8.77	13.53	20.9	17.96	7.96	14.36
Merged-chr14-61083869-1	chr14	61083369	61084369	+	730.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37014.0	NM_013869	29820.0	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	1.14	1.38	6.47	0.0	2.8	2.41	1.06	2.21	1.25
Merged-chr9-114368286-1	chr9	114367786	114368786	+	730.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040383)	promoter-TSS (NR_040383)	-38.0	NR_040383	75116.0	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	1.14	0.46	1.85	3.37	2.8	4.82	4.22	0.88	1.25
Merged-chr11-101658969-1	chr11	101658469	101659469	+	730.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6572.0	NM_025404	80981.0	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	56.63	85.25	44.4	70.17	38.25	43.4	33.8	75.61	71.2
Merged-chr9-120586752-2	chr9	120586264	120587264	+	729.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9433.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	5.15	4.15	1.85	6.07	1.87	0.0	4.22	1.77	5.0
Merged-chr9-66833431-3	chr9	66832875	66833875	+	729.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026674, intron 1 of 5)	intron (NM_026674, intron 1 of 5)	1331.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	167.61	191.69	130.42	195.67	189.87	128.61	194.34	190.57	97.43
Merged-chr10-17726978-3	chr10	17726478	17727478	+	729.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3750.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	26.89	16.13	32.37	15.52	15.39	18.49	23.24	19.9	22.48
Merged-chr13-21158997-3	chr13	21158486	21159486	+	729.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15931.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	9.15	7.37	1.85	11.47	4.67	1.61	5.28	4.42	8.12
Merged-chr8-72492248-2	chr8	72491747	72492747	+	729.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177766, exon 1 of 6)	exon (NM_177766, exon 1 of 6)	367.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	140.73	105.98	125.79	97.83	47.12	54.66	105.62	65.0	40.59
Merged-chr3-65891284-2	chr3	65890781	65891781	+	729.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	66968.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.86	5.53	7.4	6.07	3.73	3.22	9.51	13.27	6.25
Merged-chrX-13846069-2	chrX	13845538	13846538	+	729.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001284504, exon 1 of 24)	exon (NM_001284504, exon 1 of 24)	518.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	21.17	20.74	27.75	30.36	14.93	30.54	32.74	19.9	22.48
Merged-chr6-17612443-2	chr6	17611940	17612940	+	729.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-24570.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	75.51	84.32	66.6	55.33	65.78	66.71	63.37	85.34	60.58
Merged-chr8-120738915-3	chr8	120738410	120739410	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301811, exon 1 of 9)	5' UTR (NM_001301811, exon 1 of 9)	271.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	49.2	43.31	57.35	60.05	47.58	90.02	121.46	95.95	52.46
Merged-chr15-85090957-2	chr15	85090460	85091460	+	729.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_080470, exon 17 of 25)	exon (NM_080470, exon 17 of 25)	40997.0	NM_080470	140557.0	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	68.07	122.57	46.25	66.8	79.31	86.01	152.09	168.91	61.2
Merged-chr4-12140915-3	chr4	12140408	12141408	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028226, intron 1 of 2)	CpG	791.0	NM_028226	72397.0	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	17.16	22.58	5.55	17.54	20.53	12.86	33.8	25.2	1.25
Merged-chr4-19697150-3	chr4	19696624	19697624	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_074090, intron 1 of 24)	intron (NR_074090, intron 1 of 24)	11880.0	NM_177327	107568.0	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	32.04	41.01	16.65	33.74	36.85	43.4	39.08	47.75	33.72
Merged-chr10-88409989-3	chr10	88409497	88410497	+	729.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004164, intron 2 of 20)	MLTR25A|LTR|ERVK	30585.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	12.59	7.37	6.47	9.45	9.8	6.43	12.67	9.29	12.49
Merged-chr15-100637135-5	chr15	100636608	100637608	+	729.82666	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_174992)	promoter-TSS (NM_174992)	-168.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	49.2	64.05	133.19	80.97	59.25	106.9	82.38	87.99	78.69
Merged-chr15-82896499-3	chr15	82896006	82897006	+	729.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027799, exon 1 of 1)	non-coding (NR_027799, exon 1 of 1)	1955.0	NR_027799	21378.0	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	49.77	76.03	60.12	33.74	27.52	32.96	57.03	69.42	40.59
Merged-chr9-61704008-3	chr9	61703489	61704489	+	729.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	210521.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	26.89	21.2	15.72	38.46	16.79	8.84	29.57	18.57	14.36
Merged-chr13-20171256-2	chr13	20170748	20171748	+	729.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	80741.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	22.88	14.75	7.4	15.52	17.73	25.72	11.62	6.63	14.36
Merged-chr3-107754821-3	chr3	107754338	107755338	+	729.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007778, intron 3 of 8)	intron (NM_007778, intron 3 of 8)	5631.0	NM_001113530	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	5.15	1.84	0.0	1.35	2.8	0.0	2.11	0.44	3.75
Merged-chr18-62250287-3	chr18	62249782	62250782	+	729.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70182.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	10.87	13.36	7.4	6.75	4.67	7.23	12.67	12.82	9.99
Merged-chr6-136520445-1	chr6	136519945	136520945	+	729.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	1594.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	35.47	44.7	21.27	26.31	45.72	27.33	49.64	51.29	11.87
Merged-chr9-48559906-2	chr9	48559407	48560407	+	729.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45216.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	70.36	66.35	37.92	47.23	47.12	61.89	22.18	24.76	28.1
Merged-chr7-133079112-3	chr7	133078604	133079604	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	2756.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	9.15	3.23	2.77	8.1	3.27	9.65	7.39	1.33	2.5
Merged-chr6-54655912-1	chr6	54655412	54656412	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25712.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.86	4.15	0.0	8.77	5.6	4.82	2.11	3.98	1.25
Merged-chr4-150864132-2	chr4	150863635	150864635	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	9065.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	18.31	16.13	19.42	20.92	7.46	9.65	12.67	9.73	6.25
Merged-chr2-128122604-1	chr2	128122104	128123104	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028765, intron 17 of 17)	intron (NM_028765, intron 17 of 17)	-3434.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	15.45	2.3	12.95	7.42	6.53	9.65	4.22	5.75	9.37
Merged-chr1-131021671-3	chr1	131021184	131022184	+	729.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010548, intron 3 of 4)	intron (NM_010548, intron 3 of 4)	1839.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	26.89	15.67	13.87	13.49	12.13	11.25	32.74	21.22	10.62
Merged-chr1-131393845-1	chr1	131393345	131394345	+	729.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-114282.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	14.87	25.34	38.85	29.01	24.26	26.53	33.8	41.12	30.6
Merged-chr1-136551122-2	chr1	136550625	136551625	+	729.650024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73776.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	2.86	2.76	3.7	8.1	4.2	1.61	3.17	3.54	1.25
Merged-chr11-85715252-3	chr11	85714741	85715741	+	729.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045875, intron 1 of 5)	intron (NR_045875, intron 1 of 5)	4503.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	28.6	26.26	11.1	27.66	23.33	24.11	13.73	13.71	11.87
Merged-chr3-84390993-1	chr3	84390493	84391493	+	729.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-11072.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	2.29	2.3	0.0	2.7	1.87	4.82	5.28	1.33	3.75
Merged-chr12-110813292-2	chr12	110812794	110813794	+	729.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011973, intron 7 of 11)	intron (NM_011973, intron 7 of 11)	27645.0	NM_011973	26448.0	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	5.72	2.76	12.02	10.12	2.8	2.41	7.39	3.54	3.75
Merged-chr12-102391008-2	chr12	102390483	102391483	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161365)	TTS (NM_001161365)	48830.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.29	11.52	19.42	11.47	6.06	16.08	10.56	9.29	11.24
Merged-chr7-106558725-2	chr7	106558227	106559227	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	85918.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	12.01	12.9	13.87	10.8	11.66	13.66	11.62	0.88	5.0
Merged-chr9-110713210-1	chr9	110712710	110713710	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR22_Mur|LTR|ERVK	29400.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	13.73	18.43	24.05	14.17	12.6	23.31	42.25	33.16	18.11
Merged-chr14-46704363-1	chr14	46703863	46704863	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30588.0	NR_131909	328385.0	Mm.271545	NR_131909	ENSMUSG00000115015	D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	16.59	9.68	11.1	13.49	7.93	14.47	2.11	1.33	2.5
Merged-chr18-20717120-2	chr18	20716622	20717622	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019737, intron 3 of 8)	MER5A|DNA|hAT-Charlie	29282.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	25.74	15.21	35.15	16.19	11.66	13.66	9.51	16.36	11.24
Merged-chr10-42780926-1	chr10	42780426	42781426	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359285, intron 1 of 19)	MLT1D|LTR|ERVL-MaLR	19430.0	NM_153055	140740.0	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	6.86	6.45	13.87	9.45	5.6	8.04	7.39	4.42	5.0
Merged-chr12-118855313-2	chr12	118854847	118855847	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9018.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	1.72	0.92	0.0	0.67	2.8	4.82	2.11	0.88	1.25
Merged-chr2-68465596-2	chr2	68465084	68466084	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	(CAAAAA)n|Simple_repeat|Simple_repeat	6397.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	12.01	8.29	11.1	15.52	9.33	14.47	19.01	15.03	6.87
Merged-chr17-7870505-1	chr17	7870005	7871005	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55495.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	9.15	5.99	11.1	5.4	7.46	9.65	5.28	3.98	6.25
Merged-chr11-21223063-1	chr11	21222563	21223563	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15969.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	34.32	35.48	30.52	53.3	44.32	42.6	63.37	49.96	39.97
Merged-chr11-78856494-1	chr11	78855994	78856994	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29899.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	1.72	5.07	0.0	2.7	1.87	3.22	3.17	0.44	3.75
Merged-chr1-178407033-1	chr1	178406533	178407533	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026626, intron 1 of 6)	intron (NM_026626, intron 1 of 6)	1015.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	175.62	204.59	90.65	151.81	162.34	137.45	141.53	181.29	98.68
Merged-chr14-17873831-2	chr14	17873331	17874331	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-107813.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	21.17	21.2	20.35	9.45	12.13	24.92	27.46	14.15	9.37
Merged-chr15-63601707-2	chr15	63601202	63602202	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-122094.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	6.29	7.37	18.5	9.45	5.13	12.06	9.51	4.42	5.0
Merged-chr1-180366573-1	chr1	180366073	180367073	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-36024.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	12.59	12.9	32.37	21.59	8.86	8.84	6.34	4.86	7.49
Merged-chr12-112844045-2	chr12	112843522	112844522	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14501.0	NM_001359234	71963.0	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	2.86	1.38	0.0	3.37	1.87	3.22	8.45	2.21	3.75
Merged-chr7-44072335-2	chr7	44071836	44072836	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20046.0	NM_020268	16619.0	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	2.86	4.15	0.92	2.7	0.93	3.22	2.11	4.86	1.25
Merged-chr9-15046778-2	chr9	15046288	15047288	+	729.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1310.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	13.73	6.45	1.85	5.4	4.2	3.22	3.17	2.65	9.99
Merged-chr4-101654778-2	chr4	101654273	101655273	+	729.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 2 of 3)	intron (NM_175036, intron 2 of 3)	6990.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	54.35	85.71	78.62	72.19	64.38	103.69	65.48	78.71	66.2
Merged-chr5-90964916-3	chr5	90964408	90965408	+	729.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 5 of 7)	intron (NM_026788, intron 5 of 7)	33712.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	8.01	5.99	1.85	5.4	3.73	12.06	6.34	3.98	3.75
Merged-chr9-107548278-3	chr9	107547776	107548776	+	729.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053253, intron 2 of 11)	intron (NM_053253, intron 2 of 11)	966.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	8.01	6.45	7.4	5.4	5.13	11.25	12.67	9.73	14.99
Merged-chr2-4389524-3	chr2	4389020	4390020	+	729.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-11456.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	9.15	10.14	3.7	13.49	4.2	3.22	26.4	20.78	16.24
Merged-chr9-96167371-2	chr9	96166871	96167871	+	729.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177352, intron 11 of 16)	intron (NM_177352, intron 11 of 16)	-28904.0	NM_001184706	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	2.29	2.76	0.0	2.7	1.87	0.0	1.06	0.0	1.87
Merged-chr4-129406651-2	chr4	129406143	129407143	+	729.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23924.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	6.86	2.3	0.0	1.35	4.67	12.06	3.17	2.65	1.25
Merged-chr17-69475541-3	chr17	69475033	69476033	+	729.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	36207.0	NM_001145192	320722.0	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	1.14	0.0	1.85	0.0	0.93	1.61	1.06	2.21	2.5
Merged-chr12-32786210-3	chr12	32785702	32786702	+	729.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-34133.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	8.01	12.9	12.95	10.8	3.27	4.82	27.46	8.84	3.75
Merged-chr4-136163690-3	chr4	136163199	136164199	+	729.355591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8575.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	2.29	1.84	1.85	3.37	0.93	4.02	2.11	0.44	0.62
Merged-chr16-85114891-2	chr16	85114383	85115383	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	58824.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	80.66	77.87	46.25	78.27	75.11	57.87	79.21	93.74	41.22
Merged-chr11-20220548-2	chr11	20220057	20221057	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 3 of 5)	intron (NM_008996, intron 3 of 5)	19145.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	18.31	20.74	23.12	20.92	12.13	19.29	24.29	37.14	11.24
Merged-chr5-143061189-2	chr5	143060680	143061680	+	729.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	51840.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	29.75	47.0	38.85	31.04	19.59	35.37	24.29	16.8	27.48
Merged-chr8-79443627-2	chr8	79443136	79444136	+	729.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44168.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	10.3	9.68	7.4	10.12	5.6	4.02	4.22	2.21	3.75
Merged-chr2-27349132-1	chr2	27348632	27349632	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	78476.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	16.02	21.66	18.5	24.29	25.66	20.9	12.67	18.57	21.86
Merged-chr19-36816151-1	chr19	36815651	36816651	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18081.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	2.86	3.69	1.85	1.35	3.27	3.22	4.22	3.98	0.0
Merged-chr18-34080218-3	chr18	34079710	34080710	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73004.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	12.01	5.07	2.77	13.49	3.73	1.61	11.62	5.31	5.0
Merged-chr11-54770053-1	chr11	54769553	54770553	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 1 of 5)	Lx8|LINE|L1	17650.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	22.88	23.04	13.87	24.96	27.99	35.37	22.18	19.46	3.12
Merged-chr4-55534090-1	chr4	55533590	55534590	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1615.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	22.31	14.75	1.85	31.71	15.39	14.47	28.52	22.55	9.37
Merged-chr14-30596005-3	chr14	30595541	30596541	+	729.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 17 of 17)	intron (NM_011103, intron 17 of 17)	14269.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	49.2	47.92	52.72	25.64	21.93	52.25	66.54	73.4	51.84
Merged-chr2-27768599-3	chr2	27768129	27769129	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	58046.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	66.93	52.07	35.15	54.65	34.06	40.19	35.91	38.91	18.74
Merged-chr12-56405056-3	chr12	56404545	56405545	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59151.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.43	3.69	5.55	2.7	2.8	9.65	10.56	10.17	3.75
Merged-chr14-16250818-3	chr14	16250341	16251341	+	729.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362432, intron 1 of 11)	intron (NM_001362432, intron 1 of 11)	-1033.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	13.73	15.21	3.7	10.8	13.53	11.25	13.73	9.29	3.75
Merged-chr4-8926797-3	chr4	8926299	8927299	+	729.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175475.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.0	3.23	1.85	9.45	7.0	0.0	2.11	5.75	2.5
Merged-chr9-43107024-5	chr9	43106534	43107534	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_027144	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	88.67	89.85	57.35	87.71	109.63	85.2	82.38	80.47	57.46
Merged-chr5-31290049-3	chr5	31289569	31290569	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	C-rich|Low_complexity|Low_complexity	1045.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	61.78	58.98	27.75	62.07	63.91	39.39	48.58	62.35	39.97
Merged-chrX-140547871-3	chrX	140547359	140548359	+	729.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010286, intron 1 of 3)	intron (NM_010286, intron 1 of 3)	712.0	NM_010286	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	6.29	11.06	10.17	19.57	6.06	8.84	4.22	6.19	13.74
Merged-chrX-13731034-2	chrX	13730530	13731530	+	729.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 1 of 4)	Lx3C|LINE|L1	11177.0	NR_037311	100499528.0		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	3.43	2.76	0.0	7.42	1.87	4.82	3.17	2.65	1.87
Merged-chr14-72708861-2	chr14	72708356	72709356	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	1147.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	34.9	17.05	11.1	18.89	13.53	14.47	35.91	11.05	17.49
Merged-chr5-117313611-2	chr5	117313109	117314109	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5657.0	NM_001033311	231668.0	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	4.0	4.61	3.7	3.37	4.67	8.04	8.45	10.17	5.0
Merged-chr17-56884504-2	chr17	56883996	56884996	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030141, intron 10 of 13)	PB1D7|SINE|Alu	8863.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	35.47	15.21	11.1	26.31	14.0	15.27	45.42	34.93	10.62
Merged-chr10-110932009-2	chr10	110931498	110932498	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007792, exon 2 of 6)	exon (NM_007792, exon 2 of 6)	11822.0	NM_007792	13008.0	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	6.29	1.84	1.85	6.07	2.8	14.47	2.11	8.4	3.75
Merged-chr16-81330752-2	chr16	81330238	81331238	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113208, intron 1 of 17)	intron (NM_001113208, intron 1 of 17)	130041.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	2.86	1.84	3.7	6.75	0.93	3.22	4.22	1.33	7.49
Merged-chr9-95561100-2	chr9	95560597	95561597	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198414, exon 1 of 1)	3' UTR (NM_198414, exon 1 of 1)	1280.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	111.55	150.22	111.92	112.0	205.26	136.64	173.21	193.23	124.91
Merged-chr3-88624220-2	chr3	88623691	88624691	+	729.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198913, intron 1 of 21)	intron (NM_001198913, intron 1 of 21)	2797.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	54.35	66.35	62.9	93.79	62.98	113.33	57.03	70.75	48.71
Merged-chr12-57546911-1	chr12	57546411	57547411	+	729.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008259)	promoter-TSS (NM_008259)	-800.0	NM_008259	15375.0	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	5.72	0.0	3.7	4.05	3.73	0.0	2.11	1.77	0.0
Merged-chr14-32482290-3	chr14	32481791	32482791	+	729.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16382.0	NM_009891	12647.0	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik|CHOACTase	choline acetyltransferase	protein-coding	5.15	3.69	1.85	6.07	3.73	3.22	2.11	0.88	5.62
Merged-chr8-122830579-3	chr8	122830074	122831074	+	729.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17800.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	8.01	0.46	3.7	7.42	0.93	1.61	3.17	1.77	6.87
Merged-chr11-20248446-3	chr11	20247985	20248985	+	729.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	939.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	22.31	17.97	10.17	19.57	19.59	21.7	15.84	12.38	16.86
Merged-chr7-90023649-2	chr7	90023143	90024143	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5516.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	87.52	111.51	64.75	99.86	78.37	84.4	97.17	87.11	69.95
Merged-chr11-61749408-2	chr11	61748906	61749906	+	729.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144806, intron 5 of 11)	intron (NM_144806, intron 5 of 11)	12682.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	31.46	28.57	14.8	29.01	11.66	31.35	17.96	26.53	13.74
Merged-chr1-74239460-2	chr1	74238975	74239975	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	2958.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	60.64	73.26	97.12	56.0	55.51	61.09	79.21	83.57	64.33
Merged-chr10-43575167-2	chr10	43574685	43575685	+	729.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3984.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	2.86	3.23	0.0	2.02	1.4	0.0	3.17	0.0	2.5
Merged-chr2-4461040-3	chr2	4460551	4461551	+	729.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	RSINE1|SINE|B4	60075.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	31.46	18.43	20.35	11.47	6.53	8.04	44.36	74.73	28.73
Merged-chr13-64151744-3	chr13	64151240	64152240	+	729.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361047, intron 1 of 5)	intron (NM_001361047, intron 1 of 5)	633.0	NM_001361047	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	50.34	61.28	24.97	63.42	52.72	49.83	97.17	114.52	41.22
Merged-chr3-107155776-2	chr3	107155296	107156296	+	729.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-27347.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	4.0	3.23	3.7	5.4	1.87	3.22	5.28	1.33	0.0
Merged-chr11-23753352-2	chr11	23752842	23753842	+	729.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009044, intron 3 of 9)	intron (NM_009044, intron 3 of 9)	17628.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	32.61	37.32	12.02	31.71	18.66	12.86	39.08	20.34	21.86
Merged-chr4-45940236-3	chr4	45939731	45940731	+	729.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198660, intron 30 of 37)	ORR1A3|LTR|ERVL-MaLR	-25104.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	7.44	6.45	6.47	3.37	5.13	6.43	7.39	3.54	12.49
Merged-chr6-113469666-3	chr6	113469171	113470171	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001034029, exon 14 of 14)	exon (NM_001034029, exon 14 of 14)	-1784.0	NM_178942	171095.0	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	11.44	5.07	11.1	12.14	7.46	10.45	12.67	6.19	3.75
Merged-chr5-3497841-3	chr5	3497337	3498337	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-45996.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	13.73	15.67	5.55	18.89	13.53	20.9	7.39	4.42	6.25
Merged-chr7-28214329-3	chr7	28213842	28214842	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34026.0	NM_001271370	13549.0	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	6.29	1.38	1.85	4.72	0.93	6.43	2.11	2.65	6.25
Merged-chr4-126030913-3	chr4	126030420	126031420	+	729.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252651, intron 4 of 14)	intron (NM_001252651, intron 4 of 14)	6261.0	NM_001252651	12986.0	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	6.29	10.6	8.32	4.05	3.73	8.04	6.34	8.84	4.37
Merged-chr1-191169764-1	chr1	191169264	191170264	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007498)	TTS (NM_007498)	-4947.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	11.44	1.84	0.0	5.4	1.87	1.61	4.22	2.65	3.75
Merged-chr2-165876441-1	chr2	165875941	165876941	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001291158, exon 1 of 24)	5' UTR (NM_001291158, exon 1 of 24)	1996.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	17.73	27.65	46.25	28.34	16.33	17.68	52.81	63.67	64.95
Merged-chr2-164418703-1	chr2	164418203	164419203	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-13543.0	NM_001252563	17183.0	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.0	1.38	7.4	0.0	1.4	3.22	4.22	0.88	3.75
Merged-chr11-110563485-2	chr11	110562976	110563976	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84136.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.01	11.06	2.77	17.54	12.13	22.51	4.22	4.86	5.0
Merged-chr18-24559422-1	chr18	24558922	24559922	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29218.0	NM_001360807	225283.0	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	3.43	3.23	1.85	1.35	2.33	3.22	5.28	0.44	2.5
Merged-chr3-100974100-1	chr3	100973600	100974600	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4437.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	1.72	0.92	0.0	3.37	3.27	1.61	2.11	0.0	2.5
Merged-chr12-3695951-1	chr12	3695451	3696451	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-111029.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	46.91	51.15	20.35	40.48	38.25	42.6	97.17	110.54	35.6
Merged-chr3-149102349-1	chr3	149101849	149102849	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147714.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.14	1.84	3.7	3.37	5.6	14.47	1.06	7.96	6.25
Merged-chr8-107324319-1	chr8	107323819	107324819	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018823, intron 2 of 14)	intron (NM_018823, intron 2 of 14)	30849.0	NM_133957	54446.0	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	6.29	3.69	7.4	5.4	5.13	3.22	6.34	1.33	2.5
Merged-chr6-124947466-1	chr6	124946966	124947966	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	16078.0	NM_001170341	30853.0	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	2.29	6.45	1.85	9.45	4.2	1.61	6.34	1.77	2.5
Merged-chr17-32165041-2	chr17	32164522	32165522	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008716, intron 1 of 32)	(A)n|Simple_repeat|Simple_repeat	1830.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.58	4.61	0.0	0.0	0.47	3.22	5.28	3.98	5.0
Merged-chr11-71859780-1	chr11	71859280	71860280	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	80342.0	NR_045942	73816.0	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	19.45	29.03	22.2	4.72	3.73	3.22	4.22	1.33	4.37
Merged-chr4-139197152-1	chr4	139196652	139197652	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3041.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	80.66	113.81	115.62	103.23	74.17	73.14	99.28	109.66	80.56
Merged-chr17-28308927-2	chr17	28308416	28309416	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4614.0	NR_028297	72775.0	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	3.43	1.84	9.25	8.77	5.13	3.22	2.11	3.98	2.5
Merged-chr3-90585744-1	chr3	90585244	90586244	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355597, intron 1 of 2)	intron (NM_001355597, intron 1 of 2)	1085.0	NM_001355597	20197.0	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	2.29	2.3	0.0	2.7	0.93	4.82	0.0	2.21	6.25
Merged-chr11-54458362-1	chr11	54457862	54458862	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	20183.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	23.45	24.42	11.1	26.31	22.39	23.31	30.63	25.65	21.23
Merged-chr2-158284691-1	chr2	158284191	158285191	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177850)	TTS (NM_177850)	-21802.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	1.14	0.92	1.85	3.37	1.87	1.61	2.11	0.88	0.0
Merged-chr9-47471907-1	chr9	47471407	47472407	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58263.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	8.01	12.44	11.1	10.8	14.46	14.47	8.45	6.19	8.74
Merged-chr5-136428035-1	chr5	136427535	136428535	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291238, intron 2 of 22)	intron (NM_001291238, intron 2 of 22)	-52232.0	NR_030500	723975.0		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	15.45	16.59	17.57	22.94	18.66	17.68	17.96	10.17	17.49
Merged-chr4-118099841-1	chr4	118099341	118100341	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285520, intron 2 of 11)	ORR1B1|LTR|ERVL-MaLR	35105.0	NM_001285520	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	12.01	5.99	7.4	25.64	20.06	8.84	5.28	1.33	4.37
Merged-chr14-65102603-1	chr14	65102103	65103103	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4497.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	71.51	74.19	31.45	73.54	55.51	47.42	78.16	92.86	61.2
Merged-chr10-94597197-1	chr10	94596697	94597697	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10998.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	8.01	7.37	11.1	10.12	13.53	7.23	13.73	2.65	7.49
Merged-chr9-97068939-1	chr9	97068439	97069439	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42102.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	6.29	3.23	0.0	2.02	3.73	4.82	5.28	2.65	3.75
Merged-chr16-33927752-1	chr16	33927252	33928252	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	39286.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	19.45	29.95	12.95	16.87	10.26	21.7	15.84	12.38	11.87
Merged-chr16-30365693-2	chr16	30365201	30366201	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 3 of 33)	(TG)n|Simple_repeat|Simple_repeat	22829.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	32.61	21.2	38.85	15.52	16.79	15.27	14.79	11.5	9.37
Merged-chr3-59309880-1	chr3	59309380	59310380	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	MLT1C|LTR|ERVL-MaLR	34376.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	8.01	9.68	12.95	18.22	19.59	25.72	11.62	2.21	3.75
Merged-chr13-36529055-1	chr13	36528555	36529555	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039189, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	205422.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.86	2.3	5.55	5.4	1.4	4.82	9.51	5.31	1.25
Merged-chr7-19175831-2	chr7	19175340	19176340	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347582)	promoter-TSS (NM_001347582)	-581.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	1.72	2.76	4.62	2.02	0.93	0.0	2.11	0.88	2.5
Merged-chr2-173083829-1	chr2	173083329	173084329	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35696.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	1.14	0.92	0.0	3.37	3.73	1.61	2.11	1.77	6.25
Merged-chr11-5011671-1	chr11	5011171	5012171	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 2 of 22)	intron (NM_001243043, intron 2 of 22)	24847.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	29.75	28.11	30.52	33.74	32.66	42.6	21.12	22.11	28.73
Merged-chr5-115515556-2	chr5	115515050	115516050	+	729.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	8874.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	137.86	91.24	96.2	111.33	91.44	107.71	132.02	138.4	94.3
Merged-chr6-34864366-2	chr6	34863819	34864819	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	1173.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	74.94	95.84	42.55	80.29	101.23	71.54	118.29	160.51	56.21
Merged-chr4-53112469-1	chr4	53111969	53112969	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	47426.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	14.3	20.74	12.02	33.74	21.93	39.39	41.19	37.14	25.61
Merged-chr2-18899484-1	chr2	18898984	18899984	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 3 of 9)	intron (NM_008845, intron 3 of 9)	-97666.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	58.35	55.29	52.72	39.81	16.79	19.29	23.24	23.88	31.23
Merged-chr12-40248974-1	chr12	40248474	40249474	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25610.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	3.43	1.38	6.47	0.0	4.2	6.43	6.34	0.44	4.37
Merged-chr12-51844693-1	chr12	51844193	51845193	+	729.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15157.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	140.15	174.64	108.22	180.82	220.66	117.35	126.74	140.61	39.35
Merged-chr13-23467074-1	chr13	23466574	23467574	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1173.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	2.29	4.15	0.0	1.35	2.33	1.61	2.11	2.21	1.87
Merged-chr1-189867667-1	chr1	189867167	189868167	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	54624.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.86	2.3	1.85	11.47	14.0	15.27	4.22	3.1	6.25
Merged-chr19-11372479-1	chr19	11371979	11372979	+	729.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3009.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	17.73	12.9	14.8	32.39	13.06	29.74	9.51	7.07	14.99
Merged-chr8-115709589-3	chr8	115709077	115710077	+	728.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2683.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	36.04	32.72	29.6	32.39	23.79	22.51	46.47	32.28	27.48
Merged-chr18-11862940-3	chr18	11862458	11863458	+	728.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022021, intron 1 of 8)	intron (NM_022021, intron 1 of 8)	-22520.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	31.46	29.03	30.52	35.09	22.39	28.94	21.12	17.24	16.86
Merged-chr7-19589475-3	chr7	19588969	19589969	+	728.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125836, intron 6 of 17)	B3|SINE|B2	12182.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	8.01	5.07	12.02	6.07	2.8	6.43	5.28	5.31	3.12
Merged-chr4-134490188-2	chr4	134489701	134490701	+	728.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-6560.0	NM_001285845	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	16.59	11.52	16.65	20.24	14.46	12.86	2.11	6.19	0.0
Merged-chr6-124297500-3	chr6	124297006	124298006	+	728.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	BGLII_A|LTR|ERVK	-7145.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	8.58	5.53	2.77	6.07	8.4	11.25	7.39	2.21	6.25
Merged-chr13-34078906-2	chr13	34078399	34079399	+	728.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009450)	promoter-TSS (NM_009450)	-891.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	44.05	41.47	21.27	47.9	31.72	18.49	33.8	27.41	22.48
Merged-chr3-103140274-2	chr3	103139774	103140774	+	728.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356383)	promoter-TSS (NM_001356383)	-52.0	NM_001356383	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	20.02	19.81	7.4	49.93	34.99	40.19	25.35	5.75	15.61
Merged-chr15-82807591-2	chr15	82807092	82808092	+	728.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13347.0	NM_029562	76279.0	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	15.45	17.05	20.35	20.92	10.73	12.06	31.69	16.36	12.49
Merged-chr7-30613772-2	chr7	30613280	30614280	+	728.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1046.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	2.29	0.0	0.0	4.72	4.2	1.61	4.22	0.0	4.37
Merged-chr3-88335878-2	chr3	88335403	88336403	+	728.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178246)	promoter-TSS (NM_178246)	-357.0	NM_178246	229512.0	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	121.28	104.14	101.74	87.71	103.56	107.71	114.07	95.51	83.69
Merged-chr10-95415977-3	chr10	95415475	95416475	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168657)	promoter-TSS (NM_001168657)	237.0	NM_001168655	216233.0	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	13.16	2.3	0.0	10.12	4.67	2.41	11.62	1.33	5.62
Merged-chr5-110447422-3	chr5	110446947	110447947	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	1056.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	28.03	28.11	13.87	29.01	22.39	18.49	25.35	22.99	16.24
Merged-chr11-117199752-3	chr11	117199258	117200258	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113486)	promoter-TSS (NM_001113486)	97.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	131.0	106.9	91.57	152.49	134.35	112.53	212.29	184.83	56.83
Merged-chr10-120136297-3	chr10	120135824	120136824	+	728.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23359.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	6.86	8.29	9.25	3.37	5.13	0.8	13.73	2.65	9.99
Merged-chrX-60384284-3	chrX	60383798	60384798	+	728.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	10194.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	12.01	25.8	17.57	15.52	19.13	29.74	26.4	23.43	29.35
Merged-chr18-82479850-2	chr18	82479347	82480347	+	728.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025245, intron 1 of 3)	intron (NM_001025245, intron 1 of 3)	4724.0	NM_010777	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	2.86	4.61	3.7	4.72	5.6	6.43	5.28	2.21	4.37
Merged-chr7-19253851-3	chr7	19253313	19254313	+	728.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18041.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	22.88	27.19	54.57	14.17	17.73	45.01	27.46	24.76	21.23
Merged-chr12-102340561-3	chr12	102340053	102341053	+	728.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177620, intron 3 of 9)	intron (NM_177620, intron 3 of 9)	56912.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	16.02	19.81	16.65	17.54	15.86	31.35	15.84	7.52	9.99
Merged-chr6-39726328-2	chr6	39725824	39726824	+	728.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_139294)	promoter-TSS (NM_139294)	-861.0	NM_139294	109880.0	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	66.36	86.17	33.3	36.43	47.12	45.82	40.14	44.22	32.48
Merged-chr15-86250499-1	chr15	86249999	86250999	+	728.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	-27176.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	4.58	2.76	1.85	6.75	3.27	4.02	8.45	2.21	8.12
Merged-chr13-96433871-2	chr13	96433408	96434408	+	728.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042714, intron 8 of 13)	intron (NM_001042714, intron 8 of 13)	37252.0	NM_001042714	271144.0	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	9.72	6.91	8.32	13.49	6.06	11.25	5.28	4.86	7.49
Merged-chr16-19963210-2	chr16	19962698	19963698	+	728.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	19851.0	NM_183390	239743.0	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	10.3	9.22	11.1	8.1	5.6	12.86	12.67	6.19	12.49
Merged-chr19-57393584-3	chr19	57393078	57394078	+	728.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	32569.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	2.86	5.07	3.7	2.7	3.27	3.22	2.11	1.77	1.25
Merged-chr11-74501032-3	chr11	74500541	74501541	+	728.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	89117.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	31.46	29.03	18.5	35.09	23.79	51.44	39.08	45.54	22.48
Merged-chr6-29825478-3	chr6	29824968	29825968	+	728.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	ORR1F|LTR|ERVL-MaLR	-28273.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	13.73	10.6	11.1	17.54	12.6	4.82	16.9	18.57	11.87
Merged-chr4-56070225-3	chr4	56069730	56070730	+	728.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-537755.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	30.89	29.95	22.2	22.27	15.86	17.68	11.62	12.38	7.49
Merged-chr1-164248140-3	chr1	164247641	164248641	+	728.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054087)	promoter-TSS (NM_054087)	-905.0	NM_001276455	116914.0	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	41.76	51.15	37.0	56.0	78.37	49.03	58.09	66.77	31.85
Merged-chr2-68368048-1	chr2	68367548	68368548	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 7 of 17)	intron (NM_016866, intron 7 of 17)	103933.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.72	4.61	3.7	4.72	3.27	4.82	1.06	5.31	1.25
Merged-chr3-109123857-1	chr3	109123357	109124357	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172685, intron 1 of 9)	intron (NM_172685, intron 1 of 9)	708.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	27.46	20.74	33.3	29.69	21.46	38.58	34.85	29.18	9.37
Merged-chr4-47247049-1	chr4	47246549	47247549	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 3 of 39)	intron (NM_009928, intron 3 of 39)	39037.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.15	5.99	0.0	3.37	2.8	0.8	3.17	0.88	0.0
Merged-chr6-115268066-1	chr6	115267566	115268566	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-15861.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	4.0	3.23	1.85	1.35	1.4	4.82	1.06	0.44	0.62
Merged-chr7-121158577-1	chr7	121158077	121159077	+	728.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139310, intron 27 of 28)	intron (NM_139310, intron 27 of 28)	75139.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	4.0	3.23	1.85	4.05	2.8	4.82	4.22	0.44	2.5
Merged-chr15-10872604-3	chr15	10872076	10873076	+	728.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43525.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	50.34	49.76	27.75	40.48	21.93	22.51	53.87	40.24	19.36
Merged-chr3-149220905-2	chr3	149220399	149221399	+	728.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53838.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	31.46	42.85	23.12	35.09	32.66	33.76	13.73	6.19	10.62
Merged-chr3-153636653-2	chr3	153636155	153637155	+	728.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	88478.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	13.73	11.52	12.95	17.54	7.93	6.43	10.56	22.11	12.49
Merged-chrX-159963443-2	chrX	159962945	159963945	+	728.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 10 of 12)	intron (NM_001135728, intron 10 of 12)	20752.0	NM_001290664	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.57	0.0	0.0	6.07	2.33	3.22	2.11	1.33	1.25
Merged-chr5-92270686-3	chr5	92270200	92271200	+	728.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025972, intron 3 of 10)	intron (NM_025972, intron 3 of 10)	7481.0	NM_001163687	67111.0	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	5.72	4.61	9.25	8.77	4.67	14.47	11.62	3.1	3.75
Merged-chr1-191184997-2	chr1	191184461	191185461	+	728.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1628.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	28.03	15.67	20.35	25.64	9.33	8.84	20.07	10.61	0.0
Merged-chr6-134047598-3	chr6	134047104	134048104	+	728.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	11904.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	36.61	22.58	25.9	32.39	12.13	23.31	44.36	42.45	16.24
Merged-chr6-137756525-3	chr6	137756020	137757020	+	728.549988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172733, intron 1 of 8)	B3|SINE|B2	1943.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	8.58	3.23	12.95	4.72	5.13	8.04	4.22	1.33	4.37
Merged-chr14-70769736-2	chr14	70769238	70770238	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3110.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	3.43	6.45	2.77	8.1	1.87	8.84	6.34	2.65	9.37
Merged-chr11-97050811-3	chr11	97050305	97051305	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081434)	promoter-TSS (NM_001081434)	-15.0	NM_001310509	71240.0	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	21.74	24.42	18.5	40.48	21.93	31.35	28.52	23.88	23.11
Merged-chr12-54407690-1	chr12	54407190	54408190	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16372.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	5.15	8.75	12.02	11.47	8.86	16.08	15.84	4.86	3.75
Merged-chr1-106882923-2	chr1	106882438	106883438	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360853, exon 8 of 8)	3' UTR (NM_001360853, exon 8 of 8)	21763.0	NM_009257	20724.0	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	14.3	16.59	9.25	26.31	29.39	20.09	11.62	9.73	13.74
Merged-chr9-95858500-3	chr9	95857998	95858998	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_073361)	promoter-TSS (NR_073361)	-616.0	NM_001271569	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	106.4	109.21	87.87	99.86	89.57	76.36	110.9	130.0	52.46
Merged-chr6-57859823-3	chr6	57859315	57860315	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15358.0	NM_134183	171201.0	Mm.377179	NM_134183	ENSMUSG00000115343	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	5.15	1.84	0.0	4.05	6.06	3.22	3.17	2.65	1.25
Merged-chr14-102616158-2	chr14	102615657	102616657	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	366475.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	26.89	28.11	22.2	19.57	30.79	19.29	33.8	30.07	24.98
Merged-chr19-60805057-1	chr19	60804557	60805557	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6498.0	NM_001360619	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	5.15	1.84	9.25	4.72	5.6	1.61	11.62	3.54	6.25
Merged-chr1-64753861-2	chr1	64753344	64754344	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16094.0	NM_022721	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	25.17	12.9	12.95	39.81	54.58	37.78	54.92	60.13	28.73
Merged-chr1-152152613-2	chr1	152152101	152153101	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62281.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	6.86	5.53	5.55	10.8	7.46	9.65	13.73	5.75	9.99
Merged-chr13-73774195-1	chr13	73773695	73774695	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	10498.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	11.44	9.22	10.17	6.07	5.6	14.47	12.67	7.96	9.99
Merged-chr3-96263964-2	chr3	96263501	96264501	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033596)	promoter-TSS (NM_033596)	-684.0	NM_033596	97122.0	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	183.63	157.13	111.92	124.15	119.43	106.1	165.82	229.93	113.04
Merged-chr10-94943789-3	chr10	94943270	94944270	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_018797, exon 1 of 31)	exon (NM_018797, exon 1 of 31)	808.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.72	3.23	0.0	7.42	2.33	5.63	1.06	2.21	3.75
Merged-chr9-116173905-3	chr9	116173373	116174373	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	1490.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	153.31	180.17	110.07	163.28	194.07	123.78	90.83	91.09	58.08
Merged-chr3-104822626-2	chr3	104822126	104823126	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355044)	TTS (NM_001355044)	-4063.0	NM_001163440	17454.0	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	13.16	6.91	7.4	18.22	7.46	6.43	19.01	7.96	5.0
Merged-chr11-5629298-2	chr11	5628797	5629797	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023816, exon 16 of 27)	exon (NM_023816, exon 16 of 27)	59613.0	NM_023816	76389.0	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	3.43	1.84	0.0	4.05	2.33	0.0	2.11	2.65	5.62
Merged-chr1-163930639-2	chr1	163930159	163931159	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286003, intron 1 of 13)	intron (NM_001286003, intron 1 of 13)	894.0	NM_028776	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	102.97	118.88	58.27	107.28	105.43	42.6	90.83	76.94	41.84
Merged-chr1-192137184-2	chr1	192136714	192137714	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033536, intron 1 of 3)	CpG	316.0	NR_033536	100038712.0	Mm.474908	NR_033536	ENSMUSG00000097316	Gm10516	-	predicted gene 10516	ncRNA	26.31	23.96	44.4	49.93	37.32	58.68	34.85	33.16	31.85
Merged-chr9-32032942-2	chr9	32032485	32033485	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-83151.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	1.72	5.07	7.4	9.45	1.87	1.61	0.0	3.54	0.0
Merged-chr15-79893008-1	chr15	79892508	79893508	+	728.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_030675, exon 1 of 1)	non-coding (NR_030675, exon 1 of 1)	130.0	NR_030675	109361.0	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	29.17	34.1	44.4	37.78	27.99	35.37	121.46	123.81	89.31
Merged-chr13-46810260-1	chr13	46809760	46810760	+	728.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 14 of 37)	ORR1E|LTR|ERVL-MaLR	-82411.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	2.29	3.69	4.62	4.05	1.4	8.04	1.06	4.86	2.5
Merged-chr15-98417395-2	chr15	98416886	98417886	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	18941.0	NR_015496	73302.0	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	4.58	2.76	0.92	8.1	2.8	0.0	4.22	1.33	0.0
Merged-chr7-75655420-2	chr7	75654889	75655889	+	728.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-192949.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	157.89	238.69	108.22	135.62	154.88	133.43	128.85	130.0	77.44
Merged-chr6-88435839-2	chr6	88435341	88436341	+	728.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	10698.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	12.59	6.45	12.95	4.05	4.67	6.43	7.39	6.19	7.49
Merged-chr3-89227427-3	chr3	89226824	89227824	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030579)	promoter-TSS (NR_030579)	-126.0	NR_030579	100124470.0		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	9.15	5.53	9.25	5.4	1.87	4.82	4.22	3.1	3.12
Merged-chr11-43613308-3	chr11	43612811	43613811	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11749.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	8.58	1.84	8.32	6.07	1.4	3.22	4.22	4.86	5.0
Merged-chr10-115383783-3	chr10	115383258	115384258	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025780, intron 1 of 2)	intron (NM_025780, intron 1 of 2)	677.0	NM_025780	66816.0	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	46.91	52.07	37.92	87.71	103.1	66.71	61.26	68.09	24.36
Merged-chr16-36982579-3	chr16	36982080	36983080	+	728.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358217, intron 1 of 3)	intron (NM_001358217, intron 1 of 3)	-3444.0	NM_001037321	207215.0	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	6.29	7.37	9.25	8.77	8.4	8.04	17.96	7.52	7.49
Merged-chr2-103849038-2	chr2	103848536	103849536	+	728.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38414.0	NR_040514	78031.0	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	2.86	4.15	0.0	5.4	0.0	1.61	6.34	3.1	5.0
Merged-chr3-32698445-2	chr3	32697936	32698936	+	728.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10110.0	NM_019673	56456.0	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	4.0	4.61	3.7	6.07	5.6	0.8	3.17	3.98	3.75
Merged-chr1-151953763-3	chr1	151953249	151954249	+	728.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	136571.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	5.72	3.69	0.0	12.14	6.53	3.22	1.06	3.1	2.5
Merged-chr16-10984839-2	chr16	10984345	10985345	+	728.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	8276.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	24.6	37.32	33.3	35.76	28.92	32.15	16.9	36.7	25.61
Merged-chr2-25496616-2	chr2	25496109	25497109	+	728.366699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2698.0	NM_029958	77701.0	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	10.3	5.07	2.77	8.77	3.27	4.82	2.11	5.75	8.74
Merged-chr16-57344991-2	chr16	57344494	57345494	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	MERVL_2A-int|LTR|ERVL	-8283.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	6.86	9.22	16.65	4.05	6.06	1.61	12.67	16.36	11.87
Merged-chr1-144204924-2	chr1	144204429	144205429	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27557.0	NM_153171	246709.0	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	13.73	8.29	5.55	6.07	13.06	9.65	22.18	15.48	3.12
Merged-chr4-40217987-2	chr4	40217482	40218482	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 10 of 17)	B2_Mm1a|SINE|B2	21843.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	2.86	4.61	7.4	4.05	5.13	9.65	11.62	6.63	8.74
Merged-chr14-55392608-2	chr14	55392107	55393107	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86151.0	NM_001037938	28200.0	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	6.86	7.37	3.7	6.75	8.4	4.02	4.22	3.54	2.5
Merged-chr4-101670019-2	chr4	101669518	101670518	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22235.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	3.43	8.29	3.7	8.1	12.6	14.47	9.51	3.54	7.49
Merged-chr15-90669678-2	chr15	90669162	90670162	+	728.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033851, intron 1 of 3)	intron (NM_001033851, intron 1 of 3)	9726.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	13.16	14.75	12.02	34.41	22.86	24.92	16.9	9.73	9.37
Merged-chr12-25320038-2	chr12	25319543	25320543	+	728.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	190869.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	10.87	4.15	6.47	7.42	5.6	4.02	10.56	4.42	5.0
Merged-chr3-31270087-1	chr3	31269587	31270587	+	728.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172861, intron 1 of 7)	L2|LINE|L2	40232.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.15	3.23	0.0	6.75	2.33	4.02	4.22	3.54	1.25
Merged-chr10-77282981-3	chr10	77282493	77283493	+	728.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23693.0	NM_030262	80294.0	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	4.58	4.61	3.7	6.07	1.4	0.0	2.11	3.1	0.0
Merged-chr17-45736876-3	chr17	45736363	45737363	+	728.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	(CG)n|Simple_repeat|Simple_repeat	2357.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	10.3	5.99	3.7	12.82	4.2	1.61	13.73	3.1	3.75
Merged-chr14-69823641-2	chr14	69823130	69824130	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16777.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	12.01	13.36	14.8	20.92	12.13	21.7	20.07	11.94	6.25
Merged-chr2-48844308-2	chr2	48843785	48844785	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	30176.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	8.58	4.61	1.85	4.05	7.46	3.22	5.28	3.1	9.99
Merged-chr1-87857024-2	chr1	87856526	87857526	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177646, intron 1 of 29)	L1MB7|LINE|L1	-2727.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	17.16	14.75	10.17	22.27	21.93	24.11	14.79	11.05	2.5
Merged-chr14-30564628-2	chr14	30564145	30565145	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009388, intron 4 of 13)	intron (NM_009388, intron 4 of 13)	-7504.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	15.45	14.28	19.42	28.34	22.39	20.9	22.18	19.46	28.73
Merged-chr6-129255162-3	chr6	129254669	129255669	+	728.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16687.0	NR_040268	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	7.44	5.07	7.4	4.05	3.73	1.61	4.22	0.44	1.25
Merged-chr11-85686408-2	chr11	85685924	85686924	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	ORR1E|LTR|ERVL-MaLR	33320.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	20.02	15.67	4.62	18.89	32.66	28.13	27.46	17.69	8.12
Merged-chr11-110431695-2	chr11	110431184	110432184	+	728.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	MIRb|SINE|MIR	32582.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	25.74	39.17	19.42	34.41	31.72	12.86	42.25	39.8	36.85
Merged-chr10-42299684-1	chr10	42299184	42300184	+	728.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-22942.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	4.58	4.61	4.62	8.77	6.06	2.41	6.34	0.44	6.25
Merged-chr16-4960606-3	chr16	4960105	4961105	+	728.238892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028301, intron 1 of 16)	intron (NM_028301, intron 1 of 16)	3632.0	NM_028301	72615.0	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	20.59	23.04	37.92	18.89	19.13	24.11	14.79	24.76	18.11
Merged-chr9-37246364-3	chr9	37245873	37246873	+	728.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	intron (NM_001145960, intron 1 of 18)	9365.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	84.66	73.73	79.55	81.64	59.71	49.83	52.81	62.35	22.48
Merged-chr12-116049777-1	chr12	116049277	116050277	+	728.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	2053.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	6.29	7.37	5.55	3.37	4.2	1.61	6.34	1.33	3.75
Merged-chr13-113607021-1	chr13	113606521	113607521	+	728.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	11543.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	50.91	41.93	26.82	18.22	10.73	16.08	16.9	18.13	18.11
Merged-chr4-41697632-3	chr4	41697128	41698128	+	728.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016673)	promoter-TSS (NM_016673)	-537.0	NM_016673	12804.0	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	1.14	0.0	0.0	1.35	0.47	0.0	1.06	0.44	1.25
Merged-chr10-69306391-2	chr10	69305876	69306876	+	728.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46536.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	11.44	7.83	10.17	14.17	4.67	7.23	22.18	26.97	25.61
Merged-chr5-17843449-2	chr5	17842952	17843952	+	728.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6340.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	20.59	19.81	14.8	20.24	14.93	7.23	32.74	30.95	14.36
Merged-chr13-21168100-3	chr13	21167590	21168590	+	728.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-11841.0	NM_009054	19720.0	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	37.76	37.78	19.42	14.17	24.26	17.68	31.69	29.18	22.48
Merged-chr16-94011453-3	chr16	94010945	94011945	+	728.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2608.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	8.01	0.92	7.4	4.05	0.47	1.61	1.06	0.0	3.75
Merged-chr13-9883216-3	chr13	9882730	9883730	+	728.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033269, intron 4 of 4)	intron (NM_033269, intron 4 of 4)	-117909.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	10.3	2.3	1.85	12.14	8.4	2.41	11.62	13.27	6.25
Merged-chr6-83677846-3	chr6	83677337	83678337	+	728.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144943)	promoter-TSS (NM_144943)	20.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	17.16	7.37	20.35	18.89	19.59	29.74	13.73	22.55	29.98
Merged-chr12-54862124-3	chr12	54861641	54862641	+	728.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007688, intron 1 of 3)	intron (NM_007688, intron 1 of 3)	736.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	117.27	172.79	100.82	124.82	155.35	135.04	177.44	192.34	79.94
Merged-chr1-138559984-2	chr1	138559490	138560490	+	728.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 2 of 9)	intron (NM_021605, intron 2 of 9)	59767.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	12.01	7.37	12.95	13.49	7.46	4.82	20.07	12.82	11.24
Merged-chr1-152513130-1	chr1	152512630	152513630	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	112087.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	2.29	2.3	5.55	6.07	3.27	8.04	1.06	1.33	0.0
Merged-chr3-65530815-1	chr3	65530315	65531315	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178892, intron 1 of 5)	intron (NM_178892, intron 1 of 5)	-1401.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	20.02	16.13	15.72	12.14	15.39	7.23	22.18	26.53	23.73
Merged-chr3-69017371-1	chr3	69016871	69017871	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356976, intron 7 of 23)	B4A|SINE|B4	7469.0	NR_029735	723949.0		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	9.72	10.14	10.17	8.1	1.87	8.04	5.28	5.75	4.37
Merged-chr8-122263479-1	chr8	122262979	122263979	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18662.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	12.59	2.76	0.0	4.72	1.4	4.82	4.22	0.44	2.5
Merged-chr1-92749663-2	chr1	92749127	92750127	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82018.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	8.01	7.83	5.55	10.12	7.0	6.43	5.28	4.42	7.49
Merged-chr13-99093519-2	chr13	99093008	99094008	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5587.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	2.29	4.15	3.7	4.72	5.13	3.22	3.17	2.21	4.37
Merged-chr17-78410925-1	chr17	78410425	78411425	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	7227.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	39.47	47.92	26.82	39.81	41.05	32.96	42.25	56.6	31.23
Merged-chr6-88189743-1	chr6	88189243	88190243	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-4148.0	NM_001355253	14461.0	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.0	0.0	1.85	2.7	1.87	6.43	0.0	0.0	1.25
Merged-chr10-81319128-1	chr10	81318628	81319628	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008844, exon 18 of 18)	3' UTR (NM_008844, exon 18 of 18)	-1975.0	NM_027381	70312.0	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	13.73	11.06	15.72	26.99	13.53	17.68	16.9	11.5	9.37
Merged-chr8-70594971-1	chr8	70594471	70595471	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023627, exon 3 of 11)	exon (NM_023627, exon 3 of 11)	490.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	48.05	36.86	39.77	60.05	32.19	39.39	52.81	33.16	12.49
Merged-chr15-39217438-1	chr15	39216938	39217938	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	LTR41B|LTR|ERVL	19152.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	2.86	1.38	0.0	10.8	2.33	2.41	4.22	2.65	1.87
Merged-chr3-54807181-1	chr3	54806681	54807681	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133231, intron 1 of 2)	CpG	610.0	NM_133231	170767.0	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	116.13	97.23	98.05	100.53	88.64	91.63	72.88	66.77	51.84
Merged-chr1-135510453-2	chr1	135509946	135510946	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-55763.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	40.04	36.4	28.67	29.01	19.13	9.65	12.67	3.98	2.5
Merged-chr18-24438064-1	chr18	24437564	24438564	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8894.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	5.15	2.3	3.7	6.75	4.67	7.23	12.67	7.96	9.37
Merged-chr6-28807193-2	chr6	28806676	28807676	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	24571.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	3.43	8.29	2.77	12.14	8.4	4.82	7.39	4.86	2.5
Merged-chr2-156200018-2	chr2	156199513	156200513	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 1 of 17)	intron (NM_172674, intron 1 of 17)	3366.0	NM_172674	228829.0	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	32.04	45.16	24.97	19.57	13.06	28.94	23.24	54.83	35.6
Merged-chr6-140424093-1	chr6	140423593	140424593	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144920)	promoter-TSS (NM_144920)	-6.0	NM_144920	109135.0	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	1.72	0.0	0.0	8.1	3.27	8.04	3.17	0.0	0.0
Merged-chr17-84149035-1	chr17	84148535	84149535	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38912.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	4.0	7.37	3.7	4.05	3.73	3.22	4.22	1.33	1.25
Merged-chr4-88034554-1	chr4	88034054	88035054	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-1147.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	9.15	3.69	5.55	2.7	6.53	11.25	9.51	11.5	3.12
Merged-chr13-92580448-2	chr13	92579950	92580950	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	4.58	5.53	2.77	0.67	3.27	1.61	8.45	6.63	2.5
Merged-chr12-111920212-1	chr12	111919712	111920712	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12157.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	2.29	2.3	3.7	4.72	4.2	5.63	4.22	4.86	3.75
Merged-chr9-103234230-2	chr9	103233718	103234718	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3932.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	46.34	41.93	44.4	41.16	56.91	86.81	53.87	43.33	35.6
Merged-chr1-55529724-1	chr1	55529224	55530224	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	123778.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	12.01	9.68	7.4	35.09	26.59	34.56	10.56	8.4	5.0
Merged-chr17-46252776-2	chr17	46252278	46253278	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145353)	TTS (NM_145353)	-1387.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	13.16	7.83	7.4	7.42	8.4	19.29	14.79	15.92	6.25
Merged-chr2-116999005-1	chr2	116998505	116999505	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98853.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	6.86	6.91	0.0	7.42	8.4	6.43	3.17	8.4	6.25
Merged-chr11-86585150-1	chr11	86584650	86585650	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029738)	promoter-TSS (NR_029738)	-992.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	330.07	461.71	233.09	311.72	381.6	266.86	430.92	497.0	246.06
Merged-chr8-119798867-1	chr8	119798367	119799367	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20451.0	NM_028883	74347.0	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	22.88	21.2	12.02	20.24	18.66	33.76	21.12	14.15	18.11
Merged-chr8-25078017-1	chr8	25077517	25078517	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	intron (NM_031257, intron 2 of 11)	23794.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	13.16	24.88	18.5	14.17	21.93	32.96	22.18	7.96	8.74
Merged-chr18-12158782-1	chr18	12158282	12159282	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9948.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	7.44	0.92	3.7	3.37	1.87	3.22	5.28	1.33	3.12
Merged-chr1-138517177-1	chr1	138516677	138517677	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 5 of 9)	ID_B1|SINE|B4	102580.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	14.87	25.34	9.25	18.22	19.59	28.94	19.01	8.4	12.49
Merged-chr7-128058873-2	chr7	128058369	128059369	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	-3771.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	41.76	48.38	27.75	41.16	25.66	17.68	24.29	26.09	27.48
Merged-chr13-48965137-1	chr13	48964637	48965637	+	728.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033268, intron 1 of 17)	Tigger15a|DNA|TcMar-Tigger	2691.0	NM_001033268	218236.0	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	53.77	67.27	51.8	58.7	43.85	55.46	46.47	57.92	36.85
Merged-chr5-104955473-3	chr5	104954975	104955975	+	728.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030239, intron 10 of 15)	intron (NM_030239, intron 10 of 15)	27242.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	14.3	8.75	7.4	2.02	1.87	4.82	9.51	6.63	9.99
Merged-chr7-127763808-1	chr7	127763308	127764308	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172748, intron 9 of 10)	intron (NM_172748, intron 9 of 10)	-6007.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	4.0	3.23	7.4	4.72	5.13	4.82	4.22	5.75	18.74
Merged-chr16-4729218-1	chr16	4728718	4729718	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	RSINE1|SINE|B4	2857.0	NM_001136066	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	21.17	26.73	25.9	43.18	31.26	55.46	44.36	47.75	38.1
Merged-chr8-40497876-1	chr8	40497376	40498376	+	728.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	12603.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	11.44	20.74	12.95	8.77	11.66	26.53	1.06	5.75	5.0
Merged-chr6-145123915-3	chr6	145123397	145124397	+	727.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	intron (NM_008511, intron 1 of 18)	2158.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	15.45	9.68	13.87	17.54	9.8	20.09	15.84	14.59	18.74
Merged-chr8-3718784-3	chr8	3718281	3719281	+	727.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029465, exon 3 of 9)	exon (NM_029465, exon 3 of 9)	1870.0	NM_029465	75863.0	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	2.86	1.38	1.85	4.72	0.93	3.22	3.17	3.1	1.25
Merged-chr5-64933643-3	chr5	64933136	64934136	+	727.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-78.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	55.49	49.3	36.07	58.03	35.92	25.72	85.55	59.25	48.71
Merged-chr4-142019404-2	chr4	142018906	142019906	+	727.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	MLT1K|LTR|ERVL-MaLR	1508.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	65.21	79.25	52.72	87.04	102.17	98.06	158.43	99.05	45.59
Merged-chr7-98071772-2	chr7	98071249	98072249	+	727.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 30 of 48)	intron (NM_008663, intron 30 of 48)	37499.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	7.44	3.69	7.4	2.7	2.33	8.04	2.11	0.88	5.0
Merged-chr5-140370609-1	chr5	140370109	140371109	+	727.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172277, intron 1 of 10)	intron (NM_172277, intron 1 of 10)	18699.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	38.33	24.88	27.75	29.01	24.72	38.58	21.12	25.2	29.98
Merged-chr1-166171428-3	chr1	166170920	166171920	+	727.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41199.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	12.59	15.21	11.1	24.96	10.26	0.0	8.45	7.96	3.75
Merged-chr7-44891687-3	chr7	44891187	44892187	+	727.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331206, intron 3 of 16)	intron (NM_001331206, intron 3 of 16)	737.0	NM_001331208	75613.0	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	73.79	58.52	35.15	68.15	43.39	34.56	39.08	25.2	14.36
Merged-chr2-119277149-1	chr2	119276649	119277649	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5923.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	3.43	9.22	3.7	11.47	8.4	17.68	0.0	0.88	2.5
Merged-chr11-100730685-2	chr11	100730177	100731177	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	7538.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	33.18	36.86	49.02	39.13	22.39	20.09	35.91	34.05	21.86
Merged-chr13-107762951-3	chr13	107762460	107763460	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75563.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	36.04	33.64	31.45	33.74	20.53	31.35	41.19	32.72	14.99
Merged-chrX-48275771-3	chrX	48275250	48276250	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028276, intron 11 of 14)	intron (NM_028276, intron 11 of 14)	9676.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	10.3	20.74	12.02	19.57	11.2	19.29	21.12	30.95	4.37
Merged-chrX-142377525-2	chrX	142377028	142378028	+	727.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	13007.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	7.44	6.45	3.7	6.75	6.53	5.63	4.22	6.63	1.25
Merged-chr3-130065675-2	chr3	130065180	130066180	+	727.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4773.0	NM_207209	99683.0	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	2.29	1.38	6.47	2.02	2.8	4.82	1.06	2.21	1.87
Merged-chr19-45014873-3	chr19	45014424	45015424	+	727.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145503)	promoter-TSS (NM_145503)	-252.0	NM_145503	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	20.59	17.97	20.35	38.46	28.46	32.15	26.4	12.38	12.49
Merged-chr4-126108382-1	chr4	126107882	126108882	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	4425.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	18.88	12.44	11.1	18.22	5.6	5.63	7.39	8.4	5.0
Merged-chr1-37029965-3	chr1	37029451	37030451	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90424.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	18.88	17.51	5.55	19.57	8.86	12.86	30.63	27.41	13.12
Merged-chr8-86884259-3	chr8	86883755	86884755	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	1003.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	84.66	87.55	84.17	60.05	53.65	50.64	57.03	53.94	44.34
Merged-chr13-23689087-3	chr13	23688503	23689503	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	4804.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	3.43	2.76	0.0	6.07	5.6	8.84	5.28	3.1	0.0
Merged-chr3-65441795-1	chr3	65441295	65442295	+	727.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-49242.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	16.02	15.67	7.4	37.78	20.99	19.29	27.46	26.53	3.75
Merged-chr10-127041342-3	chr10	127040867	127041867	+	727.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205036)	promoter-TSS (NM_001205036)	27.0	NM_001205036	100504608.0	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	Fam119b|eef1akmt3	methyltransferase like 21B	protein-coding	21.74	15.67	9.25	29.01	26.12	18.49	20.07	15.48	9.37
Merged-chr18-65501558-1	chr18	65501058	65502058	+	727.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	70561.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	49.77	64.97	29.6	62.75	34.52	41.8	2.11	6.63	5.62
Merged-chr3-136235759-2	chr3	136235247	136236247	+	727.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 5 of 16)	intron (NM_001033350, intron 5 of 16)	90319.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.43	8.29	3.7	16.19	6.53	13.66	15.84	11.05	13.12
Merged-chr19-46484742-2	chr19	46484253	46485253	+	727.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025391, intron 11 of 11)	intron (NM_001025391, intron 11 of 11)	-16895.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	134.43	82.02	110.07	110.65	71.84	81.18	152.09	107.89	68.7
Merged-chr10-39450561-2	chr10	39450081	39451081	+	727.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	80782.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	89.24	127.64	130.42	133.59	150.22	118.96	118.29	149.89	81.81
Merged-chr14-45659130-3	chr14	45658621	45659621	+	727.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001039106)	promoter-TSS (NM_001039106)	-978.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	159.6	178.32	153.54	135.62	142.29	137.45	156.32	199.42	116.16
Merged-chr5-64718320-3	chr5	64717823	64718823	+	727.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-85200.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	28.6	32.72	42.55	23.62	29.39	40.19	33.8	22.11	18.74
Merged-chr7-99887508-2	chr7	99886987	99887987	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	28269.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	6.86	2.76	1.85	8.77	1.4	4.02	5.28	6.19	7.49
Merged-chr15-100666493-2	chr15	100666007	100667007	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270537, intron 1 of 10)	intron (NM_001270537, intron 1 of 10)	2993.0	NM_001270537	668218.0	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	38.9	44.24	41.62	34.41	36.39	40.99	44.36	34.05	22.48
Merged-chr16-70873684-2	chr16	70873190	70874190	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	polypyrimidine|Low_complexity|Low_complexity	257265.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	10.3	10.14	9.25	8.77	6.06	11.25	6.34	7.52	4.37
Merged-chr19-32895834-1	chr19	32895334	32896334	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	138257.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	1.72	7.83	1.85	8.77	7.93	6.43	7.39	3.98	8.74
Merged-chr2-49472885-1	chr2	49472385	49473385	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172663, intron 1 of 13)	ORR1D2|LTR|ERVL-MaLR	21399.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	23.45	16.13	14.8	12.14	14.0	14.47	10.56	11.94	5.0
Merged-chr11-118455779-1	chr11	118455279	118456279	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045902)	promoter-TSS (NR_045902)	-784.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	105.26	131.32	88.8	157.88	138.55	175.23	124.63	115.41	81.19
Merged-chr13-82947148-2	chr13	82946658	82947658	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-248825.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	5.72	5.53	5.55	1.35	4.67	9.65	5.28	4.86	1.25
Merged-chr19-3378251-2	chr19	3377759	3378759	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-10598.0	NM_001039658	17771.0	Mm.209941	NM_010841	ENSMUSG00000024905	Tesmin	Mtl5	testis expressed metallothionein like	protein-coding	100.11	152.52	124.87	92.44	79.77	163.17	168.99	163.16	113.04
Merged-chr5-91023339-2	chr5	91022849	91023849	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4168.0	NM_053087	71920.0	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	4.58	1.84	2.77	1.35	7.0	0.8	5.28	2.21	4.37
Merged-chr14-62893451-2	chr14	62892896	62893896	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	intron (NM_175546, intron 2 of 11)	27854.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	29.75	23.5	33.3	21.59	17.73	21.7	46.47	32.72	24.36
Merged-chr14-46976234-2	chr14	46975736	46976736	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-21308.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	19.45	19.81	16.65	18.89	17.73	17.68	17.96	9.73	16.24
Merged-chr1-55239424-1	chr1	55238924	55239924	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175439, exon 1 of 1)	3' UTR (NM_175439, exon 1 of 1)	2247.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.15	5.07	1.85	7.42	2.8	3.22	3.17	0.0	3.75
Merged-chr2-59802917-1	chr2	59802417	59803417	+	727.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 13 of 25)	intron (NM_001290659, intron 13 of 25)	79689.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	2.86	2.3	3.7	3.37	2.33	1.61	3.17	0.88	6.87
Merged-chr9-59548978-3	chr9	59548490	59549490	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	9450.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	33.18	52.07	33.3	37.11	34.99	75.56	50.7	39.35	22.48
Merged-chr15-101278810-2	chr15	101278279	101279279	+	727.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5522.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	1.72	3.23	1.85	0.0	1.87	1.61	2.11	1.77	3.75
Merged-chr5-64811754-3	chr5	64811281	64812281	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8258.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	111.55	141.46	136.89	109.98	103.1	127.0	113.01	140.17	84.94
Merged-chr1-131366069-3	chr1	131365572	131366572	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	ORR1E|LTR|ERVL-MaLR	-86509.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	22.31	17.97	12.95	17.54	17.73	17.68	13.73	19.46	13.12
Merged-chr6-42266142-3	chr6	42265631	42266631	+	727.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007610, intron 1 of 10)	intron (NM_007610, intron 1 of 10)	1146.0	NM_007610	12366.0	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	44.62	54.37	16.65	43.18	35.45	39.39	32.74	39.8	19.98
Merged-chr3-22008644-3	chr3	22008169	22009169	+	727.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67983.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.0	3.23	7.4	6.75	4.2	4.82	10.56	11.5	5.0
Merged-chr4-138007149-3	chr4	138006664	138007664	+	727.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	9339.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	49.2	23.5	14.8	39.81	21.46	31.35	22.18	26.09	19.98
Merged-chr5-137645336-2	chr5	137644804	137645804	+	727.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010571, exon 1 of 2)	exon (NM_010571, exon 1 of 2)	410.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	1.72	1.38	11.1	2.7	3.27	1.61	2.11	0.88	6.25
Merged-chr12-40565011-2	chr12	40564514	40565514	+	727.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	118961.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	32.04	36.4	23.12	31.71	33.12	35.37	16.9	14.59	38.1
Merged-chr13-94354398-1	chr13	94353898	94354898	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	4525.0	NR_045619	328309.0	Mm.174191	NM_183205	ENSMUSG00000042857	Gm9776	A530089L17	predicted gene 9776	ncRNA	6.86	6.45	5.55	2.7	1.87	3.22	5.28	1.33	1.25
Merged-chr8-27280179-3	chr8	27279681	27280681	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15864.0	NR_003107	732482.0	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	2.86	6.91	2.77	2.7	2.8	0.0	1.06	1.77	1.25
Merged-chr12-72847839-1	chr12	72847339	72848339	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69926.0	NM_029444	75801.0	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	4.0	3.23	1.85	3.37	4.2	6.43	6.34	5.75	3.75
Merged-chr2-18884496-3	chr2	18884003	18885003	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-82685.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	12.59	6.45	8.32	7.42	8.4	20.9	4.22	2.65	5.62
Merged-chr7-118483196-3	chr7	118482711	118483711	+	727.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8764.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	104.11	149.29	100.82	139.67	145.55	130.21	132.02	172.89	99.92
Merged-chr11-23597489-1	chr11	23596989	23597989	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027860, intron 12 of 21)	intron (NM_027860, intron 12 of 21)	36142.0	NM_001347242	71675.0	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	9.15	8.75	2.77	6.75	5.6	1.61	4.22	6.63	4.37
Merged-chr18-39543014-1	chr18	39542514	39543514	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-55769.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	7.44	11.06	3.7	8.1	3.73	6.43	5.28	6.19	6.87
Merged-chr7-121271232-1	chr7	121270732	121271732	+	727.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-121064.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	4.58	3.23	9.25	20.24	13.53	29.74	10.56	9.73	19.36
Merged-chr15-79441635-3	chr15	79441137	79442137	+	727.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001289899, exon 1 of 9)	5' UTR (NM_001289899, exon 1 of 9)	181.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	198.5	111.97	90.65	210.51	112.9	86.01	180.61	62.79	53.08
Merged-chr5-124900047-3	chr5	124899543	124900543	+	727.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37338.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	2.86	0.46	0.92	2.02	2.33	0.8	4.22	1.77	1.25
Merged-chr1-53775357-2	chr1	53774847	53775847	+	727.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 2 of 7)	L3|LINE|CR1	9868.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	77.8	106.44	75.85	72.87	71.84	103.69	74.99	93.74	77.44
Merged-chr4-55534626-2	chr4	55534136	55535136	+	727.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2161.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.44	8.75	0.92	13.49	7.93	6.43	10.56	5.31	5.0
Merged-chr3-152905993-2	chr3	152905480	152906480	+	727.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012028, intron 2 of 4)	intron (NM_012028, intron 2 of 4)	76227.0	NM_012028	26938.0	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	4.0	2.76	3.7	1.35	1.87	0.0	1.06	5.31	2.5
Merged-chr11-11529294-3	chr11	11528719	11529719	+	727.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39953.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	14.87	7.37	11.1	7.42	1.4	5.63	15.84	6.63	16.24
Merged-chr13-114837208-2	chr13	114836726	114837726	+	727.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008396, intron 28 of 29)	intron (NM_008396, intron 28 of 29)	18989.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	9.72	8.75	11.1	0.0	3.73	4.02	3.17	6.63	1.25
Merged-chr18-9619842-2	chr18	9619347	9620347	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007593)	promoter-TSS (NM_007593)	-378.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	6.29	2.3	3.7	9.45	6.06	1.61	6.34	5.31	2.5
Merged-chr2-151967177-2	chr2	151966709	151967709	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_035478)	TTS (NR_035478)	408.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	20.59	30.87	24.97	17.54	25.66	27.33	58.09	61.9	28.73
Merged-chr8-72261282-2	chr8	72260795	72261795	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21277.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.58	5.07	0.0	2.02	2.33	0.8	8.45	6.19	3.12
Merged-chr15-6369424-2	chr15	6368806	6369806	+	727.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-17442.0	NM_023118	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	30.89	32.25	14.8	49.93	48.52	18.49	26.4	34.49	17.49
Merged-chr15-28182100-3	chr15	28181587	28182587	+	727.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21679.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	3.43	5.07	1.85	1.35	2.8	1.61	1.06	1.77	11.24
Merged-chr9-102522519-2	chr9	102522025	102523025	+	727.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024291, intron 4 of 10)	intron (NM_024291, intron 4 of 10)	16387.0	NM_024291	16716.0	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	9.72	8.75	5.55	5.4	7.0	8.84	3.17	9.73	2.5
Merged-chr15-25633055-2	chr15	25632564	25633564	+	727.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	ID_B1|SINE|B4	10514.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	156.17	139.16	115.62	89.06	75.11	69.13	86.61	90.2	45.59
Merged-chr14-121445358-2	chr14	121444860	121445860	+	727.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59894.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.43	0.46	0.92	6.75	0.93	4.82	0.0	2.65	3.75
Merged-chr11-3102061-2	chr11	3101561	3102561	+	727.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-21960.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	1.14	6.45	12.02	10.12	15.39	14.47	6.34	6.63	18.11
Merged-chrX-13482752-2	chrX	13482253	13483253	+	727.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173415, intron 2 of 2)	L2b|LINE|L2	15081.0	NM_173415	236690.0	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	11.44	20.74	18.5	18.22	15.86	13.66	11.62	8.4	11.24
Merged-chr1-131287485-3	chr1	131286983	131287983	+	727.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081011, exon 23 of 23)	3' UTR (NM_001081011, exon 23 of 23)	-7920.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	27.46	20.27	35.15	29.01	13.06	32.15	29.57	19.46	28.1
Merged-chr7-102771173-2	chr7	102770648	102771648	+	727.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3378.0	NM_147092	259096.0	Mm.377839	NM_147092	ENSMUSG00000073966	Olfr561	MOR14-2	olfactory receptor 561	protein-coding	6.29	2.3	1.85	3.37	4.2	8.04	7.39	3.98	1.25
Merged-chr19-32386712-2	chr19	32386228	32387228	+	727.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	1321.0	NM_001362423	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	13.16	9.22	4.62	9.45	9.33	2.41	6.34	1.77	5.0
Merged-chr10-20841642-2	chr10	20841164	20842164	+	727.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-110883.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.0	5.53	5.55	3.37	9.33	3.22	6.34	5.31	8.74
Merged-chr5-137531855-3	chr5	137531353	137532353	+	727.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010312, intron 1 of 9)	CpG	1453.0	NM_010312	14693.0	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	66.93	94.46	79.55	30.36	28.92	100.47	51.75	58.37	59.33
Merged-chr11-89061597-3	chr11	89061107	89062107	+	727.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019505)	promoter-TSS (NM_019505)	856.0	NR_110336	414094.0	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	25.74	17.51	14.8	12.14	10.73	8.04	16.9	16.36	21.23
Merged-chr3-41303017-1	chr3	41302517	41303517	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	190182.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	2.29	4.15	1.85	1.35	3.27	0.8	2.11	5.31	5.0
Merged-chr18-23819342-1	chr18	23818842	23819842	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	15372.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	9.72	13.36	6.47	9.45	8.86	12.86	5.28	7.96	7.49
Merged-chr15-10714285-1	chr15	10713785	10714785	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030690)	promoter-TSS (NM_030690)	-187.0	NM_001356534	75646.0	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	6.29	1.84	3.7	9.45	1.87	6.43	6.34	3.1	1.25
Merged-chr9-15302218-1	chr9	15301718	15302718	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133732)	promoter-TSS (NM_133732)	-611.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	51.48	56.68	26.82	67.47	49.92	40.99	50.7	51.73	20.61
Merged-chr15-62153537-3	chr15	62153046	62154046	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 3 of 8)	intron (NR_003368, intron 3 of 8)	65905.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	88.1	94.0	74.92	84.34	96.57	90.02	199.62	191.46	88.06
Merged-chr6-134042088-1	chr6	134041588	134042588	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6388.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	15.45	15.67	26.82	8.77	12.6	11.25	9.51	11.05	3.75
Merged-chr3-62506691-1	chr3	62506191	62507191	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028136, intron 1 of 24)	CpG	297.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	100.68	76.95	46.25	126.85	61.58	46.62	102.45	54.83	36.22
Merged-chr15-63123293-1	chr15	63122793	63123793	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	356315.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	29.75	28.11	12.95	29.01	20.53	21.7	23.24	27.86	13.74
Merged-chr2-21065202-2	chr2	21064709	21065709	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96335.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	6.29	7.37	9.25	12.82	9.8	11.25	13.73	6.19	9.99
Merged-chr16-10438216-3	chr16	10437699	10438699	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013778, intron 1 of 6)	intron (NM_001013778, intron 1 of 6)	9163.0	NM_001359069	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	22.88	20.74	18.5	19.57	16.79	12.06	16.9	19.01	5.0
Merged-chr12-85510722-1	chr12	85510222	85511222	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16A2|LTR|ERVL	36832.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.15	2.76	0.0	8.1	5.13	3.22	9.51	7.52	5.0
Merged-chr8-26884027-1	chr8	26883527	26884527	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59604.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	29.17	16.13	21.27	49.93	34.52	28.13	48.58	22.99	12.49
Merged-chr9-119978401-3	chr9	119977964	119978964	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	4559.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	16.02	17.51	12.02	19.57	11.2	30.54	16.9	11.94	22.48
Merged-chr12-73737091-1	chr12	73736591	73737591	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 10 of 13)	intron (NM_008856, intron 10 of 13)	152295.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.86	3.23	7.4	4.05	7.93	12.86	6.34	3.98	3.75
Merged-chr9-40343960-1	chr9	40343460	40344460	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040728)	TTS (NR_040728)	2285.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.72	7.83	5.55	3.37	5.13	4.82	3.17	3.54	5.0
Merged-chr1-150759715-1	chr1	150759215	150760215	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024720, intron 15 of 106)	intron (NM_001024720, intron 15 of 106)	233720.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	4.58	2.76	16.65	6.75	7.93	6.43	1.06	6.19	3.75
Merged-chr14-45387682-2	chr14	45387180	45388180	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019425, intron 1 of 5)	intron (NM_019425, intron 1 of 5)	1116.0	NM_019425	54342.0	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	13.73	2.76	9.25	8.77	5.6	4.02	10.56	6.63	6.25
Merged-chr9-40563333-1	chr9	40562833	40563833	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31950.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	19.45	19.81	26.82	14.84	9.8	9.65	40.14	32.72	22.48
Merged-chr11-31872968-3	chr11	31872458	31873458	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290676, exon 1 of 9)	exon (NM_001290676, exon 1 of 9)	2018.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	24.03	30.87	37.92	37.11	27.99	21.7	48.58	35.82	31.85
Merged-chr16-70661363-1	chr16	70660863	70661863	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	44938.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	1.14	2.76	5.55	4.05	2.8	5.63	0.0	2.65	2.5
Merged-chr2-167350442-1	chr2	167349942	167350942	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1264.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	58.35	34.56	26.82	64.77	42.45	51.44	80.27	57.92	33.72
Merged-chr19-55299545-2	chr19	55299055	55300055	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360595, intron 9 of 9)	intron (NM_001360595, intron 9 of 9)	16481.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	9.72	13.82	7.4	8.1	11.2	12.06	14.79	17.69	16.24
Merged-chr3-107149856-1	chr3	107149356	107150356	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33287.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	12.59	7.37	15.72	3.37	2.33	3.22	4.22	2.21	3.75
Merged-chr6-86789841-1	chr6	86789341	86790341	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	3743.0	NM_013471	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	30.32	30.87	23.12	6.07	3.27	1.61	3.17	0.88	3.75
Merged-chr2-3499449-1	chr2	3498949	3499949	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015765, intron 6 of 13)	intron (NM_015765, intron 6 of 13)	13365.0	NR_103465	50497.0	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	9.72	9.68	5.55	8.1	10.73	16.88	14.79	5.75	7.49
Merged-chr1-156614361-1	chr1	156613861	156614861	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	55574.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	14.87	12.9	9.25	19.57	14.0	14.47	13.73	10.61	12.49
Merged-chr7-75653917-2	chr7	75653416	75654416	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	-194422.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	57.78	83.4	45.32	58.7	45.25	40.99	40.14	29.18	27.48
Merged-chr9-44391627-1	chr9	44391127	44392127	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021395, exon 26 of 26)	3' UTR (NM_021395, exon 26 of 26)	-5300.0	NM_001293631	14385.0	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	9.15	3.69	10.17	9.45	1.87	1.61	1.06	1.33	5.0
Merged-chr4-88035630-1	chr4	88035130	88036130	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2223.0	NM_027326	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	6.86	5.07	5.55	6.07	5.6	1.61	2.11	3.98	9.37
Merged-chr2-24359503-2	chr2	24359004	24360004	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	-8171.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	6.86	2.3	1.85	4.72	7.0	0.0	7.39	4.86	5.0
Merged-chr2-62641991-1	chr2	62641491	62642491	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	4264.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	17.73	28.11	11.1	11.47	17.26	12.86	26.4	22.55	17.49
Merged-chr1-36613209-2	chr1	36612714	36613714	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201365, intron 6 of 9)	intron (NM_201365, intron 6 of 9)	-19882.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	113.27	131.32	63.82	36.43	32.19	34.56	36.97	26.09	49.34
Merged-chr1-133661829-1	chr1	133661329	133662329	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	-430.0	NM_001276767	70579.0	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	80.66	114.27	54.57	122.12	114.76	86.01	136.25	136.19	50.59
Merged-chr11-32555569-1	chr11	32555069	32556069	+	727.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	22303.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	51.48	60.82	63.82	88.39	58.31	95.65	98.23	74.28	65.58
Merged-chr15-6403610-1	chr15	6403110	6404110	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	(TTTTG)n|Simple_repeat|Simple_repeat	16862.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	48.05	34.1	21.27	48.58	20.06	23.31	35.91	34.49	31.85
Merged-chr4-45523185-1	chr4	45522685	45523685	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	7643.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	15.45	21.66	22.2	12.82	20.06	27.33	9.51	7.96	14.99
Merged-chr6-91111321-1	chr6	91110821	91111821	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018815, intron 1 of 39)	intron (NM_018815, intron 1 of 39)	5505.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	5.15	4.15	5.55	2.7	1.87	8.04	4.22	1.33	6.25
Merged-chr6-83102243-1	chr6	83101743	83102743	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081266, exon 1 of 9)	exon (NM_001081266, exon 1 of 9)	727.0	NM_001081266	243510.0	Mm.436553	NM_001081266	ENSMUSG00000107499	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	59.49	58.52	41.62	56.68	64.84	81.18	70.76	49.52	29.35
Merged-chr8-107116203-3	chr8	107115704	107116704	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19659.0	NR_104410	21750.0	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	2.86	3.69	3.7	4.05	4.2	1.61	3.17	3.98	1.25
Merged-chr11-74484187-2	chr11	74483700	74484700	+	727.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	105958.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	14.3	13.36	18.5	18.89	8.86	12.06	9.51	7.52	8.74
Merged-chr9-51076001-1	chr9	51075501	51076501	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033534, intron 2 of 7)	intron (NM_001033534, intron 2 of 7)	1093.0	NM_001033534	244864.0	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	2.86	3.69	4.62	4.05	4.67	3.22	2.11	0.0	4.37
Merged-chr5-122647715-1	chr5	122647215	122648215	+	727.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 1 of 12)	(CA)n|Simple_repeat|Simple_repeat	-2709.0	NM_001284402	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	124.71	62.67	51.8	127.52	62.98	51.44	52.81	27.41	18.11
Merged-chr3-51156823-3	chr3	51156331	51157331	+	726.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67616.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.43	3.23	1.85	1.35	1.87	3.22	0.0	1.33	1.25
Merged-chr12-17774982-3	chr12	17774502	17775502	+	726.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	84193.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.86	12.9	40.7	15.52	10.26	19.29	38.02	19.9	27.48
Merged-chr11-54648758-3	chr11	54648273	54649273	+	726.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 16 of 28)	intron (NM_001252494, intron 16 of 28)	52627.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	86.38	96.76	51.8	122.8	112.43	80.38	137.3	130.44	46.84
Merged-chr1-156860023-2	chr1	156859502	156860502	+	726.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028333, intron 4 of 4)	intron (NM_028333, intron 4 of 4)	20979.0	NM_028333	72713.0	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	56.63	56.22	71.22	64.77	49.45	37.78	40.14	48.64	33.72
Merged-chr7-31019389-2	chr7	31018887	31019887	+	726.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	20930.0	NR_106017	102465635.0		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	3.43	5.99	3.7	6.75	6.06	4.82	5.28	2.21	11.24
Merged-chr9-44199773-2	chr9	44199267	44200267	+	726.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	34279.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	25.17	22.12	36.07	37.11	20.06	38.58	15.84	19.46	19.98
Merged-chr2-57331460-3	chr2	57330976	57331976	+	726.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	RSINE1|SINE|B4	93094.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	16.02	21.2	16.65	20.24	26.59	10.45	10.56	12.38	15.61
Merged-chr7-25179685-1	chr7	25179185	25180185	+	726.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	24616.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	4.0	2.3	3.7	1.35	2.33	0.0	2.11	0.44	1.87
Merged-chr6-108574078-2	chr6	108573576	108574576	+	726.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	49091.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	13.16	5.07	9.25	15.52	8.86	3.22	5.28	2.65	7.49
Merged-chr9-47738917-3	chr9	47738410	47739410	+	726.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	79298.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	46.91	50.23	20.35	58.03	46.65	48.23	57.03	61.9	38.1
Merged-chr2-130577817-2	chr2	130577263	130578263	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011025)	TTS (NM_011025)	1594.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	3.43	1.38	0.92	4.05	1.87	1.61	3.17	0.44	3.75
Merged-chr6-88034581-2	chr6	88034069	88035069	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	10448.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	45.76	19.81	34.22	41.83	22.39	46.62	44.36	19.46	33.72
Merged-chr13-93778349-1	chr13	93777849	93778849	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 1 of 7)	L1_Mus2|LINE|L1	6670.0	NM_009712	11881.0	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	3.43	7.83	4.62	15.52	10.73	16.08	3.17	4.42	2.5
Merged-chr15-87077987-2	chr15	87077472	87078472	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-466327.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	8.01	6.91	5.55	24.29	26.59	18.49	24.29	29.18	10.62
Merged-chr18-44724614-2	chr18	44724085	44725085	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001085373, exon 3 of 19)	exon (NM_001085373, exon 3 of 19)	-62319.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	4.58	4.15	5.55	3.37	6.06	3.22	6.34	3.1	1.25
Merged-chr5-109596839-2	chr5	109596335	109597335	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37842.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.15	3.23	1.85	4.05	5.13	1.61	7.39	3.98	2.5
Merged-chr9-123856945-3	chr9	123856392	123857392	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011798, intron 1 of 1)	Charlie10b|DNA|hAT-Charlie	-4993.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	37.18	38.71	42.55	31.71	22.86	50.64	51.75	49.08	38.72
Merged-chr9-31285023-2	chr9	31284506	31285506	+	726.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13605.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	9.72	11.06	20.35	12.82	7.93	9.65	7.39	9.29	11.24
Merged-chr12-76324870-2	chr12	76324397	76325397	+	726.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001101471)	promoter-TSS (NM_001101471)	6.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	4.58	2.3	1.85	6.07	5.13	3.22	5.28	5.75	2.5
Merged-chr15-4028035-3	chr15	4027519	4028519	+	726.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028266)	promoter-TSS (NR_028266)	-613.0	NR_028266	414066.0	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	62.35	58.52	26.82	44.53	57.85	60.28	53.87	59.25	29.98
Merged-chr15-100216300-3	chr15	100215797	100216797	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001159361, exon 38 of 38)	3' UTR (NM_001159361, exon 38 of 38)	-11562.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	13.73	9.22	4.62	8.77	7.0	10.45	12.67	15.03	13.12
Merged-chr7-45739536-3	chr7	45739016	45740016	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	2962.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	9.15	3.23	1.85	4.05	0.93	3.22	4.22	1.33	5.0
Merged-chr2-68886296-3	chr2	68885799	68886799	+	726.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 1 of 10)	RMER10B|LTR|ERVL	24858.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	13.73	13.36	20.35	12.82	9.8	16.88	11.62	17.69	11.24
Merged-chr5-30709953-2	chr5	30709452	30710452	+	726.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1612.0	NM_001356949	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	4.58	0.46	5.55	0.67	0.93	0.8	3.17	1.33	6.25
Merged-chr12-8313931-3	chr12	8313407	8314407	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021429, intron 1 of 6)	intron (NM_021429, intron 1 of 6)	474.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	108.69	141.46	61.05	132.24	150.22	112.53	132.02	97.28	44.34
Merged-chr11-108353077-1	chr11	108352577	108353577	+	726.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9189.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	5.15	9.68	5.55	5.4	0.47	8.04	2.11	2.65	3.75
Merged-chr17-34377512-3	chr17	34376981	34377981	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111094, intron 1 of 9)	intron (NM_001111094, intron 1 of 9)	349.0	NM_001111094	100038862.0	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	28.03	16.59	16.65	10.8	9.33	1.61	24.29	13.27	6.25
Merged-chr11-59965424-3	chr11	59964935	59965935	+	726.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009026)	promoter-TSS (NM_009026)	-491.0	NM_009026	19416.0	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	2.29	5.99	3.7	9.45	2.8	0.0	7.39	4.42	1.25
Merged-chr6-54667943-2	chr6	54667445	54668445	+	726.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	-13679.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	32.04	33.64	36.07	32.39	33.59	37.78	19.01	18.13	14.36
Merged-chr2-132217253-2	chr2	132216766	132217766	+	726.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30522.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	5.72	6.91	0.0	10.12	4.67	3.22	3.17	2.65	12.49
Merged-chr13-24614128-2	chr13	24613640	24614640	+	726.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001286101)	promoter-TSS (NM_001286101)	-466.0	NM_001286101	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	22.88	27.19	12.02	21.59	18.19	14.47	14.79	9.73	8.74
Merged-chr3-107630741-3	chr3	107630245	107631245	+	726.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153563, intron 1 of 20)	intron (NM_153563, intron 1 of 20)	965.0	NM_153563	229707.0	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	32.04	29.49	24.97	27.66	16.33	23.31	17.96	16.36	16.24
Merged-chr2-163583984-1	chr2	163583484	163584484	+	726.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18330.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	4.0	4.61	3.7	6.07	2.33	1.61	1.06	1.77	6.25
Merged-chr4-59753741-2	chr4	59753241	59754241	+	726.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001015681, exon 4 of 4)	3' UTR (NM_001015681, exon 4 of 4)	30114.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	4.58	9.22	9.25	5.4	1.4	0.8	3.17	5.75	4.37
Merged-chr5-36483956-2	chr5	36483444	36484444	+	726.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	341.0	NM_001170454	231151.0	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	24.6	16.13	34.22	22.94	26.12	20.09	12.67	18.13	20.61
Merged-chr7-88259859-2	chr7	88259364	88260364	+	726.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-18221.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	38.9	47.46	31.45	40.48	28.92	16.88	40.14	57.92	26.23
Merged-chr4-9111175-2	chr4	9110655	9111655	+	726.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158138.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	3.43	8.75	2.77	8.1	8.86	3.22	13.73	12.82	13.74
Merged-chr16-31755207-3	chr16	31754708	31755708	+	726.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	858.0	NM_001252436	13383.0	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs large MAGUK scaffold protein 1	protein-coding	30.89	64.51	34.22	51.28	47.12	32.15	39.08	38.03	28.1
Merged-chr17-83397729-4	chr17	83397197	83398197	+	726.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357886, intron 1 of 21)	intron (NM_001357886, intron 1 of 21)	46766.0	NM_001357886	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	57.21	65.43	63.82	50.6	61.58	69.13	53.87	56.6	33.72
Merged-chr1-185208520-2	chr1	185208019	185209019	+	726.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163754, intron 1 of 34)	intron (NM_001163754, intron 1 of 34)	4351.0	NM_001163754	98732.0	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	124.71	128.1	65.67	165.98	167.01	106.9	147.87	138.4	103.05
Merged-chr14-55879813-3	chr14	55879308	55880308	+	726.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_019820, exon 3 of 3)	3' UTR (NM_019820, exon 3 of 3)	4448.0	NM_019820	56410.0	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	8.01	5.53	2.77	8.1	2.8	3.22	4.22	2.21	6.25
Merged-chr1-155108571-3	chr1	155108004	155109004	+	726.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8868.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	24.6	8.29	6.47	10.12	10.73	4.82	19.01	12.82	5.0
Merged-chr10-99264542-4	chr10	99264041	99265041	+	726.520813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026268, intron 1 of 2)	intron (NM_026268, intron 1 of 2)	1310.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	237.4	292.6	146.14	161.93	200.6	109.32	210.18	263.53	135.52
Merged-chr8-85456736-1	chr8	85456236	85457236	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23895.0	NM_025722	66714.0	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	2.29	3.69	5.55	5.4	0.93	3.22	3.17	3.1	0.0
Merged-chr2-158180951-2	chr2	158180452	158181452	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11056.0	NR_036606	73399.0	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	6.86	4.61	2.77	10.8	6.06	4.82	1.06	3.1	3.75
Merged-chr5-113226643-2	chr5	113226149	113227149	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-260.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	9.15	3.69	1.85	7.42	5.13	0.0	1.06	1.33	1.25
Merged-chr8-122989186-1	chr8	122988686	122989686	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	53098.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	18.88	20.74	5.55	25.64	14.93	13.66	16.9	12.38	3.75
Merged-chr5-145167660-1	chr5	145167160	145168160	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133735)	promoter-TSS (NM_133735)	447.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	77.23	63.13	50.87	69.5	47.12	57.87	45.42	67.65	31.85
Merged-chr5-77357913-2	chr5	77357448	77358448	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47464.0	NM_153798	231329.0	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	3.43	6.91	1.85	17.54	14.46	0.8	6.34	2.21	6.25
Merged-chr17-10356208-2	chr17	10355694	10356694	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31592.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	15.45	5.53	3.7	16.19	7.0	4.02	4.22	5.31	2.5
Merged-chr5-111103583-2	chr5	111103091	111104091	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	99447.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	5.72	7.83	1.85	8.77	10.26	1.61	1.06	1.33	5.0
Merged-chr17-35394605-2	chr17	35394053	35395053	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_051981, exon 2 of 3)	non-coding (NR_051981, exon 2 of 3)	454.0	NR_051981	15016.0	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	40.62	24.88	20.35	22.94	8.86	6.43	72.88	58.37	18.74
Merged-chr1-84590363-3	chr1	84589861	84590861	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-105478.0	NR_039588	100628595.0		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	16.59	5.53	11.1	12.82	7.93	6.43	12.67	9.29	8.74
Merged-chr1-136675497-2	chr1	136675002	136676002	+	726.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7894.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	195.07	205.05	142.44	247.62	223.92	176.83	276.72	305.54	126.15
Merged-chr6-125083173-1	chr6	125082673	125083673	+	726.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001163269)	TTS (NM_001163269)	11896.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	12.01	6.91	11.1	10.8	6.53	12.86	6.34	9.73	8.74
Merged-chr1-74784586-3	chr1	74784096	74785096	+	726.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009526, exon 4 of 4)	exon (NM_009526, exon 4 of 4)	-7423.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	5.15	1.38	0.0	6.75	1.4	8.84	3.17	3.1	11.24
Merged-chr12-102436222-3	chr12	102435729	102436729	+	726.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	3584.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	316.92	312.87	154.47	260.44	282.7	212.2	295.73	387.78	167.37
Merged-chr12-54489856-2	chr12	54489377	54490377	+	726.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98559.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	4.0	0.92	1.85	3.37	3.27	0.0	4.22	3.1	0.0
Merged-chr7-139298639-2	chr7	139298138	139299138	+	726.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50156.0	NM_001098636	101631.0	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	8.01	4.61	1.85	7.42	4.67	8.04	5.28	1.77	7.49
Merged-chr14-104868312-3	chr14	104867813	104868813	+	726.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015593, intron 2 of 5)	intron (NR_015593, intron 2 of 5)	229166.0	NR_015593	320249.0	Mm.320725	NR_015593	ENSMUSG00000115432	D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	21.74	21.66	9.25	17.54	16.79	14.47	19.01	29.63	13.74
Merged-chr15-27863191-2	chr15	27862687	27863687	+	726.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 11 of 56)	intron (NM_001081302, intron 11 of 56)	162661.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	5.72	5.53	1.85	10.8	8.4	1.61	5.28	2.65	2.5
Merged-chr12-41407802-2	chr12	41407297	41408297	+	726.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	ORR1C1-int|LTR|ERVL-MaLR	78260.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	1.14	7.37	3.7	4.05	7.0	8.04	5.28	6.19	2.5
Merged-chr7-24474089-1	chr7	24473589	24474589	+	726.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011113, intron 5 of 6)	intron (NM_011113, intron 5 of 6)	-7934.0	NM_153112	260299.0	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	4.58	3.69	7.4	0.0	3.27	2.41	5.28	1.77	1.25
Merged-chr4-133675167-3	chr4	133674656	133675656	+	726.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1990.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	88.67	58.98	58.27	89.06	43.39	67.52	84.49	110.98	53.08
Merged-chr2-71209558-3	chr2	71209057	71210057	+	726.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2149.0	NM_001198875	13427.0	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	8.58	5.99	3.7	6.07	4.2	10.45	4.22	3.98	5.0
Merged-chr8-70743431-1	chr8	70742931	70743931	+	726.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	CpG	-11248.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	2.29	2.3	7.4	24.29	14.46	7.23	13.73	4.86	2.5
Merged-chr16-45371258-2	chr16	45370772	45371772	+	726.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37781.0	NM_001358443	17470.0	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	7.44	12.44	8.32	8.1	15.86	6.43	1.06	4.86	2.5
Merged-chr14-72685053-3	chr14	72684585	72685585	+	726.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	24918.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	9.72	12.44	1.85	11.47	10.26	9.65	19.01	16.8	12.49
Merged-chr13-97544455-3	chr13	97543946	97544946	+	726.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15554.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	20.59	18.43	40.7	40.48	27.99	34.56	29.57	4.86	19.98
Merged-chr1-171703275-2	chr1	171702777	171703777	+	726.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007649, intron 3 of 3)	(TGGGGG)n|Simple_repeat|Simple_repeat	21285.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	11.44	7.37	12.02	15.52	1.87	3.22	5.28	3.1	3.75
Merged-chr7-102015029-2	chr7	102014519	102015519	+	726.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133947)	TTS (NM_133947)	3136.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	35.47	35.48	48.1	37.78	25.19	59.48	44.36	42.01	26.23
Merged-chr4-43820382-3	chr4	43819897	43820897	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019474)	TTS (NM_019474)	1036.0	NM_019474	29846.0	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	9.15	9.68	7.4	10.12	7.0	9.65	10.56	7.96	10.62
Merged-chr2-3630985-3	chr2	3630479	3631479	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82479.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.15	8.75	12.95	6.07	4.67	6.43	5.28	3.98	2.5
Merged-chr1-92659564-3	chr1	92659063	92660063	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10722.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	19.45	24.88	14.8	34.41	14.0	24.11	19.01	14.15	20.61
Merged-chr11-117847658-3	chr11	117847162	117848162	+	726.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-1575.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	74.94	70.5	76.77	81.64	42.45	100.47	66.54	81.36	72.45
Merged-chr10-80748829-3	chr10	80748342	80749342	+	726.216675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6361.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	2.86	5.53	0.0	6.75	1.4	1.61	2.11	0.88	1.25
Merged-chr3-53448429-3	chr3	53447949	53448949	+	726.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14809.0	NM_172501	212114.0	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	4.58	5.07	6.47	9.45	5.6	5.63	10.56	1.77	1.25
Merged-chr9-56464022-3	chr9	56463504	56464504	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025812, intron 1 of 9)	intron (NM_025812, intron 1 of 9)	45385.0	NM_025812	66867.0	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	4.58	5.53	3.7	9.45	6.06	1.61	6.34	4.42	1.25
Merged-chr11-70306277-3	chr11	70305766	70306766	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR73|LTR|ERV1	16264.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	8.58	3.23	1.85	12.82	7.0	4.82	11.62	10.17	1.25
Merged-chr14-14552346-3	chr14	14551848	14552848	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-150677.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	14.3	20.27	31.45	27.66	21.93	28.94	7.39	7.96	6.25
Merged-chr13-42866753-3	chr13	42866232	42867232	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302636, intron 1 of 12)	intron (NM_001302636, intron 1 of 12)	485.0	NM_001302636	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	58.92	76.49	47.17	72.87	73.71	84.4	69.71	57.92	48.09
Merged-chr2-33429529-3	chr2	33429028	33430028	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085507, intron 1 of 2)	L2a|LINE|L2	1796.0	NM_001085507	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	17.73	45.16	45.32	34.41	52.25	65.11	61.26	45.54	49.96
Merged-chr1-84467931-3	chr1	84467430	84468430	+	726.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-183285.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	17.73	16.13	9.25	21.59	17.73	7.23	16.9	16.36	7.49
Merged-chr3-88140975-3	chr3	88140470	88141470	+	726.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1402.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	61.21	99.07	72.15	82.99	87.7	117.35	60.2	64.11	77.44
Merged-chr8-128456566-2	chr8	128456035	128457035	+	726.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	97294.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	10.3	25.34	24.05	29.69	19.13	30.54	21.12	13.27	11.24
Merged-chr14-73105580-2	chr14	73105067	73106067	+	726.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36943.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	4.0	3.23	5.55	2.7	0.47	2.41	5.28	0.88	3.75
Merged-chr15-30427567-3	chr15	30427066	30428066	+	726.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 2 of 21)	intron (NM_001355502, intron 2 of 21)	254973.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	1.72	1.84	0.0	1.35	4.67	0.0	3.17	4.42	1.25
Merged-chr6-57582567-3	chr6	57582076	57583076	+	726.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025992, intron 1 of 22)	MER57E1|LTR|ERV1	1584.0	NM_025992	67138.0	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	79.52	75.11	30.52	58.03	46.65	27.33	78.16	91.97	41.84
Merged-chr15-99121047-2	chr15	99120533	99121533	+	726.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	-5812.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	5.15	3.23	6.47	34.41	13.06	24.11	7.39	2.65	7.49
Merged-chrX-9473504-3	chrX	9473014	9474014	+	726.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4190.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	104.69	125.79	104.52	89.74	91.44	73.14	105.62	120.27	67.45
Merged-chr16-22264849-3	chr16	22264350	22265350	+	726.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1155.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	169.33	206.89	163.72	198.37	216.93	112.53	209.12	221.97	145.51
Merged-chr9-88406035-3	chr9	88405535	88406535	+	726.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359958, intron 8 of 28)	intron (NM_001359958, intron 8 of 28)	32916.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	12.01	9.22	22.2	9.45	7.46	24.11	14.79	11.94	16.86
Merged-chr11-23272244-3	chr11	23271753	23272753	+	726.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035226, intron 5 of 25)	B2_Mm1t|SINE|B2	16212.0	NM_134014	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	6.29	6.91	12.95	3.37	1.87	4.82	1.06	0.88	5.0
Merged-chr12-40657096-3	chr12	40656633	40657633	+	726.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	211080.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	69.22	64.97	69.37	66.8	43.39	81.99	82.38	86.66	51.21
Merged-chr7-66137773-1	chr7	66137273	66138273	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	28258.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	17.73	22.58	14.8	12.82	10.73	15.27	16.9	11.05	16.24
Merged-chr5-99278454-1	chr5	99277954	99278954	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25527.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	14.3	13.82	7.4	13.49	18.19	8.04	10.56	2.65	2.5
Merged-chr13-111640457-1	chr13	111639957	111640957	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45721.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	3.43	1.84	1.85	4.05	2.33	4.82	4.22	7.07	1.25
Merged-chr3-132085342-1	chr3	132084842	132085842	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020265)	promoter-TSS (NM_020265)	50.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	2.29	1.84	7.4	2.7	5.6	4.82	0.0	1.33	1.87
Merged-chr19-40671394-1	chr19	40670894	40671894	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	11624.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	29.75	29.49	61.97	29.01	20.99	32.15	31.69	21.22	32.48
Merged-chr8-68117659-3	chr8	68117144	68118144	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143070.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	13.73	8.75	20.35	4.05	3.73	9.65	14.79	5.75	7.49
Merged-chr3-8959097-1	chr3	8958597	8959597	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	5049.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	9.15	5.07	10.17	16.19	3.73	8.84	1.06	15.92	16.86
Merged-chr11-98052779-1	chr11	98052279	98053279	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146028, intron 1 of 10)	CpG	683.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	10.3	6.45	1.85	7.42	7.93	4.82	7.39	3.54	2.5
Merged-chr11-97415980-2	chr11	97415470	97416470	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-34190.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	56.06	32.25	40.7	63.42	40.59	44.21	41.19	20.34	21.23
Merged-chr12-32910249-2	chr12	32909741	32910741	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43548.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	6.86	4.61	1.85	4.72	3.73	8.04	7.39	5.75	2.5
Merged-chr1-55552694-3	chr1	55552177	55553177	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	146731.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	19.45	17.97	12.95	45.21	39.65	56.27	15.84	13.71	6.25
Merged-chr8-3278669-1	chr8	3278169	3279169	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 1 of 21)	intron (NM_001330056, intron 1 of 21)	948.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	40.62	41.01	29.6	25.64	37.79	40.19	39.08	34.49	24.36
Merged-chr2-38336714-2	chr2	38336205	38337205	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2576.0	NM_001290646	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	4.58	5.07	0.92	3.37	2.8	1.61	0.0	0.44	2.5
Merged-chr6-72217016-1	chr6	72216516	72217516	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153778, intron 2 of 2)	intron (NM_153778, intron 2 of 2)	18561.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	2.29	1.84	9.25	4.05	1.4	3.22	8.45	0.88	3.75
Merged-chr12-35824709-3	chr12	35824213	35825213	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-100908.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	13.16	3.23	1.85	8.77	6.53	4.02	6.34	3.98	3.75
Merged-chr18-61398140-1	chr18	61397640	61398640	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029879)	promoter-TSS (NR_029879)	-240.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	66.36	52.07	76.77	51.95	47.58	42.6	96.11	76.94	24.36
Merged-chr1-174222310-1	chr1	174221810	174222810	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011465, intron 36 of 51)	MTD|LTR|ERVL-MaLR	28666.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	2.29	2.3	5.55	12.14	3.27	8.04	17.96	7.07	5.62
Merged-chr3-79528154-2	chr3	79527669	79528669	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	39510.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	29.17	26.73	16.65	30.36	26.12	6.43	62.31	41.56	18.11
Merged-chr2-142606211-1	chr2	142605711	142606711	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	295253.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	2.86	3.23	0.92	4.05	3.73	1.61	3.17	3.54	3.75
Merged-chr16-12772735-1	chr16	12772235	12773235	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38655.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.58	4.61	0.92	6.07	10.26	10.45	23.24	16.36	16.86
Merged-chr4-133191068-1	chr4	133190568	133191568	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 6 of 8)	intron (NM_153423, intron 6 of 8)	-4587.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	14.87	5.53	12.95	16.87	7.0	15.27	8.45	0.44	6.87
Merged-chr6-97877588-1	chr6	97877088	97878088	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	-52229.0	NM_001178049	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	12.01	3.69	0.0	4.72	6.53	3.22	6.34	1.77	3.75
Merged-chr18-69471883-1	chr18	69471383	69472383	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	125723.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	1.14	3.23	3.7	7.42	6.53	4.82	0.0	3.1	3.75
Merged-chr16-14237507-1	chr16	14237007	14238007	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013607, intron 9 of 41)	MER20|DNA|hAT-Charlie	53901.0	NM_001161775	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	6.29	2.3	4.62	2.7	2.33	1.61	2.11	3.54	2.5
Merged-chr16-20085431-1	chr16	20084931	20085931	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12123.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	11.44	15.67	11.1	17.54	16.33	19.29	20.07	17.69	14.99
Merged-chr7-141294048-1	chr7	141293548	141294548	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007878, exon 3 of 4)	exon (NM_007878, exon 3 of 4)	2042.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	5.72	2.76	1.85	10.8	1.87	1.61	6.34	2.65	2.5
Merged-chr6-88009407-1	chr6	88008907	88009907	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009005, intron 3 of 5)	intron (NM_009005, intron 3 of 5)	10388.0	NM_001293655	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	12.01	25.34	18.5	20.24	11.66	17.68	10.56	10.17	15.61
Merged-chr10-63308785-1	chr10	63308285	63309285	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359484, intron 17 of 22)	intron (NM_001359484, intron 17 of 22)	30250.0	NM_019812	93759.0	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	2.29	5.07	7.4	7.42	1.87	5.63	10.56	4.42	3.75
Merged-chr19-15802160-1	chr19	15801660	15802660	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122462.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	10.87	1.84	2.77	4.05	0.47	1.61	4.22	5.75	0.62
Merged-chr10-92142821-1	chr10	92142321	92143321	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028262, intron 3 of 12)	intron (NR_028262, intron 3 of 12)	-5598.0	NR_037219	100526517.0		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	3.43	3.69	5.55	6.07	5.6	8.04	5.28	3.98	3.75
Merged-chr14-66250361-1	chr14	66249861	66250861	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	30691.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	8.01	5.53	7.4	8.77	5.6	4.82	11.62	6.19	6.25
Merged-chr2-167417813-1	chr2	167417313	167418313	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3897.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	8.58	7.83	0.0	7.42	1.87	0.0	5.28	2.21	2.5
Merged-chr10-83353967-3	chr10	83353446	83354446	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6275.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	6.29	3.23	5.55	6.07	2.33	4.82	12.67	6.19	6.25
Merged-chr10-7041179-2	chr10	7040694	7041694	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18009.0	NM_001033391	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	91.53	98.15	80.47	113.35	84.44	127.0	85.55	86.66	83.69
Merged-chr6-5637487-1	chr6	5636987	5637987	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-88152.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	8.01	3.69	5.55	4.05	4.2	10.45	1.06	3.54	3.75
Merged-chr9-61369041-1	chr9	61368541	61369541	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3325.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	15.45	13.36	15.72	14.17	7.93	14.47	20.07	11.05	3.75
Merged-chr15-38691459-2	chr15	38690999	38691999	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025494, intron 12 of 12)	intron (NM_025494, intron 12 of 12)	29595.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	8.01	10.14	14.8	12.14	15.86	8.84	9.51	9.73	9.99
Merged-chr10-99422491-1	chr10	99421991	99422991	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	159260.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.29	5.07	3.7	0.67	8.86	8.04	2.11	3.1	1.25
Merged-chr13-101694882-1	chr13	101694382	101695382	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-2252.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	16.59	18.43	13.87	17.54	8.86	6.43	21.12	16.36	6.25
Merged-chr6-52064575-1	chr6	52064075	52065075	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38374.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	7.44	3.69	0.0	6.07	4.67	7.23	6.34	6.19	5.0
Merged-chr17-34300982-1	chr17	34300482	34301482	+	726.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4885.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	68.07	72.34	31.45	13.49	14.93	8.04	7.39	11.94	5.0
Merged-chr8-22477814-2	chr8	22477320	22478320	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001012667)	promoter-TSS (NM_001012667)	-941.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	68.07	101.37	99.89	87.71	100.77	90.02	120.41	143.7	68.07
Merged-chr2-169781986-1	chr2	169781486	169782486	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	148340.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	1.14	0.46	1.85	0.67	1.4	1.61	29.57	17.24	13.12
Merged-chr7-113167341-1	chr7	113166841	113167841	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25326.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	6.29	5.99	3.7	2.02	3.27	1.61	2.11	4.42	3.75
Merged-chrX-167013119-2	chrX	167012624	167013624	+	726.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57246.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	16.59	29.03	12.02	23.62	18.19	13.66	47.53	35.82	24.98
Merged-chr19-55491504-1	chr19	55491004	55492004	+	726.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	175447.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	5.72	0.92	0.0	1.35	0.93	0.0	23.24	17.69	18.11
Merged-chr5-99965659-3	chr5	99965153	99966153	+	725.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077265, intron 4 of 8)	intron (NM_001077265, intron 4 of 8)	13285.0	NM_001077266	11991.0	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	4.58	4.61	13.87	12.14	4.67	15.27	12.67	3.98	2.5
Merged-chr14-19889796-3	chr14	19889300	19890300	+	725.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038637, intron 4 of 4)	intron (NM_001038637, intron 4 of 4)	50875.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	28.6	29.49	33.3	33.74	27.99	27.33	39.08	26.53	22.48
Merged-chr3-65360698-3	chr3	65360199	65361199	+	725.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 11 of 13)	intron (NM_001357358, intron 11 of 13)	-11270.0	NR_040390	319798.0	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	22.88	27.19	26.82	21.59	35.45	34.56	45.42	38.03	43.72
Merged-chr1-184169430-2	chr1	184168930	184169930	+	725.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	135049.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	8.58	5.07	8.32	8.77	4.2	4.02	2.11	3.98	6.25
Merged-chr7-135680485-2	chr7	135679983	135680983	+	725.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 16 of 17)	intron (NM_001316681, intron 16 of 17)	-28169.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.43	4.15	0.92	1.35	1.87	2.41	2.11	2.21	1.25
Merged-chr13-54371679-2	chr13	54371198	54372198	+	725.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009946, intron 1 of 3)	CpG	349.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	1.72	1.38	1.85	2.02	0.47	1.61	4.22	0.0	9.37
Merged-chr17-46641281-2	chr17	46640782	46641782	+	725.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357130, intron 3 of 15)	intron (NM_001357130, intron 3 of 15)	4798.0	NM_001357130	74764.0	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	10.3	19.35	17.57	9.45	8.4	14.47	17.96	10.17	16.24
Merged-chr1-89070945-3	chr1	89070399	89071399	+	725.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133816, intron 1 of 5)	CpG	484.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	17.73	21.2	37.0	25.64	18.66	13.66	38.02	19.46	15.61
Merged-chr10-25058893-2	chr10	25058379	25059379	+	725.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-131409.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	6.29	4.61	9.25	6.07	1.4	3.22	7.39	2.65	6.25
Merged-chr3-54361114-3	chr3	54360626	54361626	+	725.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	19.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	40.04	48.84	40.7	12.14	17.26	14.47	30.63	36.26	31.85
Merged-chr7-30325617-3	chr7	30325117	30326117	+	725.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3242.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	8.01	3.69	5.55	5.4	5.13	6.43	7.39	6.19	6.87
Merged-chr16-64884095-3	chr16	64883601	64884601	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	32100.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	12.01	12.44	10.17	6.75	9.8	7.23	9.51	3.54	9.99
Merged-chr15-76229559-3	chr15	76229058	76230058	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201385)	promoter-TSS (NM_201385)	-61.0	NM_201385	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	6.86	2.3	1.85	5.4	6.53	6.43	7.39	0.88	3.75
Merged-chr8-47947808-1	chr8	47947308	47948308	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	42743.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	15.45	24.42	16.65	14.84	10.26	31.35	16.9	17.24	19.98
Merged-chr17-27911913-3	chr17	27911429	27912429	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	2623.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	212.23	193.07	134.12	156.53	145.08	170.4	143.64	149.89	78.07
Merged-chr5-105559308-3	chr5	105558807	105559807	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133897, intron 2 of 3)	L1MA5|LINE|L1	39836.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	256.85	243.75	169.27	200.39	159.08	96.45	267.21	295.81	115.54
Merged-chr15-73487761-1	chr15	73487261	73488261	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24799.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	5.72	0.92	0.0	2.7	3.27	1.61	6.34	3.1	2.5
Merged-chr6-135237534-2	chr6	135237053	135238053	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010352, exon 7 of 7)	exon (NM_010352, exon 7 of 7)	10331.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	7.44	1.84	1.85	12.82	2.33	8.84	5.28	2.65	2.5
Merged-chr14-13579106-3	chr14	13578570	13579570	+	725.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163032, intron 3 of 4)	intron (NM_001163032, intron 3 of 4)	-91806.0	NM_177624	218739.0	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	2.86	3.69	6.47	14.84	22.86	38.58	6.34	11.5	21.23
Merged-chr8-110481190-1	chr8	110480690	110481690	+	725.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 24 of 86)	LTR16A1|LTR|ERVL	21166.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.57	0.0	3.7	0.67	2.33	9.65	3.17	1.77	2.5
Merged-chr10-51518072-3	chr10	51517586	51518586	+	725.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	27188.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	9.72	15.21	15.72	11.47	13.06	15.27	6.34	6.63	23.73
Merged-chr14-40937783-2	chr14	40937287	40938287	+	725.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	10422.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	63.5	46.54	33.3	41.83	32.66	29.74	35.91	24.76	38.72
Merged-chr7-145198457-3	chr7	145197944	145198944	+	725.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132643, intron 19 of 22)	intron (NR_132643, intron 19 of 22)	9675.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	2.86	2.76	5.55	6.75	5.6	13.66	6.34	3.1	3.75
Merged-chr5-136087022-2	chr5	136086487	136087487	+	725.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	PB1D7|SINE|Alu	3071.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	67.5	50.23	50.87	60.05	48.52	47.42	100.34	103.02	64.33
Merged-chr5-99828693-2	chr5	99828182	99829182	+	725.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-74709.0	NR_131054	330133.0	Mm.447264	NR_131054	ENSMUSG00000105218	Gm38413	A830083F22|Gm43248	predicted gene, 38413	ncRNA	3.43	8.29	7.4	6.75	4.2	4.02	3.17	3.54	7.49
Merged-chr8-116237744-2	chr8	116237243	116238243	+	725.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-267272.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	12.59	7.37	14.8	4.05	7.46	10.45	5.28	3.98	8.74
Merged-chr7-100868728-3	chr7	100868247	100869247	+	725.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081116)	TTS (NM_001081116)	-5334.0	NM_177073	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	19.45	23.5	21.27	26.99	17.26	46.62	29.57	32.28	18.74
Merged-chr9-58233933-1	chr9	58233433	58234433	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008884, intron 3 of 7)	intron (NM_008884, intron 3 of 7)	12783.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	45.19	53.45	65.67	37.11	22.39	40.19	38.02	30.07	59.95
Merged-chr18-32856871-1	chr18	32856371	32857371	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110015, intron 16 of 22)	intron (NM_001110015, intron 16 of 22)	-19584.0	NR_045381	75795.0	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	37.76	39.17	49.02	42.51	49.92	55.46	40.14	42.45	47.46
Merged-chr7-141010669-1	chr7	141010169	141011169	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025378)	promoter-TSS (NM_025378)	75.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	38.33	59.9	47.17	64.77	53.18	77.16	79.21	72.52	63.08
Merged-chr10-117300617-2	chr10	117300126	117301126	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7758.0	NM_013590	17110.0	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	13.73	22.12	12.95	18.22	14.0	18.49	27.46	12.82	7.49
Merged-chr1-87281798-1	chr1	87281298	87282298	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028889, intron 1 of 3)	intron (NM_028889, intron 1 of 3)	17445.0	NR_151447	98363.0	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.0	3.23	1.85	5.4	3.27	6.43	4.22	1.33	2.5
Merged-chr12-28676187-1	chr12	28675687	28676687	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134052, intron 1 of 3)	intron (NM_134052, intron 1 of 3)	980.0	NM_134052	104923.0	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	15.45	23.96	18.5	33.06	30.79	22.51	61.26	60.58	24.36
Merged-chr18-65742025-2	chr18	65741526	65742526	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177028, intron 10 of 14)	MIRc|SINE|MIR	43758.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	15.45	11.06	12.02	14.84	15.39	7.23	12.67	6.19	2.5
Merged-chr7-30594761-3	chr7	30594269	30595269	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1827.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	13.16	3.69	8.32	4.72	6.53	8.04	6.34	6.19	10.62
Merged-chr6-85325282-3	chr6	85324793	85325793	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178639, intron 1 of 13)	intron (NM_178639, intron 1 of 13)	8129.0	NM_178639	94282.0	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	12.01	13.82	22.2	12.14	8.4	8.04	12.67	14.15	12.49
Merged-chr17-69178842-3	chr17	69178349	69179349	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	intron (NM_001355736, intron 1 of 21)	19493.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	60.07	63.13	75.85	65.45	36.39	73.95	43.3	32.28	56.83
Merged-chr15-5141959-1	chr15	5141459	5142459	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1902.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	28.03	25.34	17.57	24.96	20.06	32.15	25.35	18.57	23.73
Merged-chr15-6509049-1	chr15	6508549	6509549	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	63716.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.86	5.07	5.55	4.05	4.2	7.23	4.22	1.33	2.5
Merged-chr1-192532400-2	chr1	192531906	192532906	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144881, intron 11 of 11)	intron (NM_144881, intron 11 of 11)	238813.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	9.15	2.3	5.55	8.1	2.33	7.23	7.39	0.88	1.25
Merged-chr14-7977684-3	chr14	7977168	7978168	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007870, intron 4 of 7)	intron (NM_007870, intron 4 of 7)	16514.0	NM_007870	13421.0	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	24.6	28.57	46.25	20.92	13.06	30.54	19.01	16.36	16.24
Merged-chr2-145588155-2	chr2	145587661	145588661	+	725.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33179.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	4.0	3.69	3.7	2.02	1.4	1.61	4.22	3.98	8.74
Merged-chr9-37544571-2	chr9	37544064	37545064	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020518)	TTS (NM_020518)	5309.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	6.29	3.23	7.4	4.05	4.2	9.65	6.34	7.52	1.25
Merged-chrX-56949139-2	chrX	56948638	56949638	+	725.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93936.0	NM_009766	12209.0	Mm.10687	NM_009766	ENSMUSG00000031130	Brs3	BRS-3	bombesin-like receptor 3	protein-coding	5.72	3.69	12.95	6.07	5.13	6.43	4.22	5.31	9.99
Merged-chr5-135134718-3	chr5	135134217	135135217	+	725.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152882, intron 15 of 16)	intron (NR_152882, intron 15 of 16)	-14994.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	12.59	8.29	1.85	11.47	13.53	20.9	17.96	19.9	5.0
Merged-chr2-156722357-3	chr2	156721857	156722857	+	725.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042487, intron 1 of 6)	intron (NM_001042487, intron 1 of 6)	1078.0	NM_001042487	228836.0	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	DLG associated protein 4	protein-coding	32.04	32.72	41.62	37.11	20.53	41.8	29.57	19.01	28.1
Merged-chr11-19830848-3	chr11	19830336	19831336	+	725.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93606.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.29	1.38	0.0	10.12	1.4	2.41	3.17	3.54	5.62
Merged-chr19-41384018-3	chr19	41383489	41384489	+	725.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	intron (NM_031376, intron 1 of 16)	1081.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	318.06	351.12	202.56	300.25	308.36	190.5	459.44	508.49	213.59
Merged-chrX-135569642-3	chrX	135569175	135570175	+	725.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	29102.0	NM_130888	170722.0	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	1.72	1.38	0.0	2.02	1.4	3.22	2.11	0.44	1.25
Merged-chr7-141579129-2	chr7	141578632	141579632	+	725.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	16952.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	21.17	25.8	11.1	21.59	21.46	12.06	24.29	19.01	11.24
Merged-chr7-35335291-2	chr7	35334748	35335748	+	725.383301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027897, intron 1 of 14)	intron (NM_027897, intron 1 of 14)	1011.0	NM_027897	52428.0	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	7.44	2.76	4.62	4.05	7.93	0.0	2.11	0.88	5.0
Merged-chr14-30125199-2	chr14	30124699	30125699	+	725.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 11 of 46)	intron (NM_001083616, intron 11 of 46)	102566.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	26.89	13.36	12.95	50.6	49.92	32.15	21.12	21.67	7.49
Merged-chr13-47224757-2	chr13	47224232	47225232	+	725.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 3 of 7)	intron (NM_146042, intron 3 of 7)	30729.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	97.82	106.9	79.55	101.21	118.96	166.38	82.38	68.98	76.19
Merged-chr19-4085186-2	chr19	4084689	4085689	+	725.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013878, intron 3 of 6)	intron (NM_013878, intron 3 of 6)	1670.0	NM_013878	29866.0	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	5.72	1.84	4.62	6.75	0.93	3.22	1.06	2.21	1.25
Merged-chr2-145123676-1	chr2	145123176	145124176	+	725.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-44099.0	NM_001356497	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	0.0	3.7	7.42	1.87	6.43	1.06	0.44	0.0
Merged-chr13-95881623-1	chr13	95881123	95882123	+	725.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	intron (NM_027711, intron 1 of 35)	10299.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.72	3.69	5.55	8.77	7.46	12.06	5.28	5.31	5.0
Merged-chr2-166185576-3	chr2	166185068	166186068	+	725.31665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29885.0	NM_028072	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.72	5.99	5.55	11.47	10.73	1.61	12.67	3.1	1.25
Merged-chr1-136137747-2	chr1	136137253	136138253	+	725.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	(TG)n|Simple_repeat|Simple_repeat	6363.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	209.94	154.36	166.49	210.51	138.55	194.52	259.82	256.46	156.76
Merged-chr12-103348745-2	chr12	103348224	103349224	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	7277.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	38.33	26.73	24.97	26.99	15.39	14.47	19.01	19.9	10.62
Merged-chr9-16307525-1	chr9	16307025	16308025	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	70706.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.58	5.07	7.4	6.07	10.73	12.06	9.51	2.65	0.0
Merged-chr11-85518606-2	chr11	85518094	85519094	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	165430.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	10.3	9.68	7.4	11.47	14.0	16.08	10.56	11.05	11.24
Merged-chr17-24650340-2	chr17	24649899	24650899	+	725.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357796)	promoter-TSS (NM_001357796)	-94.0	NM_023055	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	18.31	5.99	7.4	7.42	11.2	18.49	10.56	9.73	13.12
Merged-chr16-88372207-2	chr16	88371716	88372716	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81951.0	NM_001346964	14805.0	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	1.72	2.3	0.0	0.67	4.2	1.61	2.11	2.21	3.75
Merged-chr11-75155397-2	chr11	75154904	75155904	+	725.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	12748.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	38.9	34.56	31.45	26.99	24.72	33.76	43.3	39.35	24.36
Merged-chrX-23554710-2	chrX	23554222	23555222	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138329.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	5.72	3.69	3.7	9.45	5.13	1.61	1.06	8.84	1.25
Merged-chr18-3004667-1	chr18	3004167	3005167	+	725.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	118745.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	7.44	23.96	5.55	10.8	27.99	1.61	12.67	9.29	3.12
Merged-chr2-148698814-3	chr2	148698308	148699308	+	725.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019632, intron 9 of 10)	MTEb|LTR|ERVL-MaLR	17688.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	13.16	10.14	1.85	20.92	13.06	11.25	9.51	7.07	13.74
Merged-chr10-79892914-3	chr10	79892426	79893426	+	725.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001329541)	TTS (NM_001329541)	2073.0	NM_001291915	11537.0	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	4.0	1.84	4.62	6.75	1.4	4.82	3.17	3.54	4.37
Merged-chr1-131638907-2	chr1	131638401	131639401	+	725.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007799, intron 1 of 9)	Zaphod2|DNA|hAT-Tip100	587.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	7.44	4.15	10.17	12.14	5.6	3.22	5.28	3.98	3.75
Merged-chr8-69206620-3	chr8	69206123	69207123	+	725.18335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2423.0	NM_001013379	234358.0	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	3.43	3.23	5.55	5.4	1.87	0.0	0.0	0.88	5.0
Merged-chrX-23384504-3	chrX	23384018	23385018	+	725.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19436.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	2.29	0.46	0.0	2.7	0.93	3.22	2.11	3.54	0.62
Merged-chr5-81022201-5	chr5	81021770	81022770	+	725.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	intron (NM_198702, intron 1 of 27)	677.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	6.86	9.68	6.47	6.75	3.27	4.02	2.11	6.19	2.5
Merged-chr11-97022004-3	chr11	97021582	97022582	+	725.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_133649, exon 1 of 2)	non-coding (NR_133649, exon 1 of 2)	4336.0	NR_133649	100127433.0	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	Sp6os	predicted gene 11532	ncRNA	12.59	8.75	11.1	14.84	9.33	15.27	10.56	6.63	7.49
Merged-chr8-108718302-2	chr8	108717805	108718805	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	3661.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	17.16	17.05	18.5	20.92	17.26	21.7	16.9	11.94	16.24
Merged-chr18-46448974-2	chr18	46448479	46449479	+	725.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16837.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	16.02	13.36	4.62	19.57	11.2	8.04	24.29	15.92	6.87
Merged-chr6-29762753-2	chr6	29762252	29763252	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5691.0	NM_021414	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	4.0	5.99	1.85	4.72	0.47	1.61	2.11	0.88	2.5
Merged-chr12-57211814-2	chr12	57211271	57212271	+	725.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14299.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	6.29	4.61	0.0	10.12	5.6	12.86	8.45	3.54	5.0
Merged-chr2-129384157-3	chr2	129383687	129384687	+	725.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-13048.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	42.9	38.25	20.35	34.41	33.59	46.62	36.97	34.49	39.97
Merged-chr5-28321904-3	chr5	28321420	28322420	+	725.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028234, intron 1 of 18)	intron (NM_028234, intron 1 of 18)	4731.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	15.45	5.07	8.32	10.8	10.73	1.61	10.56	9.29	6.87
Merged-chr10-8251737-2	chr10	8251212	8252212	+	725.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 5 of 7)	intron (NM_177387, intron 5 of 7)	267113.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	15.45	10.6	18.5	23.62	6.06	12.06	13.73	15.92	14.99
Merged-chr4-101648763-3	chr4	101648205	101649205	+	725.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175036, intron 1 of 3)	intron (NM_175036, intron 1 of 3)	922.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	102.4	141.0	106.37	109.98	96.1	114.94	158.43	176.87	116.79
Merged-chr5-104033245-1	chr5	104032745	104033745	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11449.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	25.17	19.35	4.62	21.59	12.6	6.43	46.47	24.76	13.74
Merged-chr7-19803169-2	chr7	19802676	19803676	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6367.0	NM_023224	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	20.59	7.83	8.32	14.84	7.46	8.84	23.24	10.17	6.87
Merged-chr10-44068816-1	chr10	44068316	44069316	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63970.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	23.45	18.43	12.95	12.82	22.39	25.72	23.24	25.2	18.11
Merged-chr6-48448597-1	chr6	48448097	48449097	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173428, exon 2 of 103)	exon (NM_173428, exon 2 of 103)	368.0	NM_173428	243369.0	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	5.72	5.07	0.0	2.7	2.8	3.22	1.06	1.33	4.37
Merged-chr9-85842659-1	chr9	85842159	85843159	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164792)	promoter-TSS (NM_001164792)	-193.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	4.0	3.23	2.77	3.37	1.87	6.43	4.22	0.88	2.5
Merged-chr1-87205249-1	chr1	87204749	87205749	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009604)	promoter-TSS (NM_009604)	-562.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	2.86	3.23	5.55	8.1	8.4	0.0	5.28	1.77	0.0
Merged-chr1-142467401-2	chr1	142466851	142467851	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-1173346.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	6.29	10.14	11.1	10.8	18.66	15.27	14.79	7.96	8.74
Merged-chr13-120299473-2	chr13	120298972	120299972	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037925)	promoter-TSS (NM_001037925)	-920.0	NM_001037925	625360.0	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	29.75	22.58	31.45	19.57	13.53	24.11	17.96	17.69	26.23
Merged-chr12-35298911-1	chr12	35298411	35299411	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-104014.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	28.6	14.75	1.85	16.19	17.73	7.23	6.34	13.71	5.0
Merged-chr5-92145146-1	chr5	92144646	92145646	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	7208.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	10.3	3.69	0.0	14.84	2.8	4.82	7.39	3.98	1.25
Merged-chr14-105285424-1	chr14	105284924	105285924	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 1 of 7)	Lx8|LINE|L1	26751.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	16.02	14.75	3.7	11.47	10.73	9.65	20.07	8.84	11.87
Merged-chr4-154881500-1	chr4	154881000	154882000	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013783, intron 2 of 23)	intron (NM_013783, intron 2 of 23)	-9497.0	NR_154548	102634887.0	Mm.72944	NR_154548		Gm13112	-	predicted gene 13112	ncRNA	4.58	6.45	3.7	4.05	3.27	6.43	2.11	0.44	5.0
Merged-chr1-7053617-1	chr1	7053117	7054117	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35303.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.58	2.76	1.85	2.7	1.87	5.63	4.22	2.65	3.75
Merged-chr8-70620908-1	chr8	70620408	70621408	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_153074)	TTS (NM_153074)	4064.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	22.31	10.6	20.35	30.36	14.0	20.9	36.97	20.34	12.49
Merged-chr10-24727706-2	chr10	24727205	24728205	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15546.0	NM_008813	18605.0	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	5.72	1.84	7.4	2.02	2.33	3.22	4.22	1.77	2.5
Merged-chr17-4736901-1	chr17	4736401	4737401	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101921.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.57	2.76	0.0	2.7	5.6	6.43	5.28	2.21	5.0
Merged-chr15-67145540-1	chr15	67145040	67146040	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 2 of 8)	intron (NM_009177, intron 2 of 8)	31342.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	4.58	1.84	9.25	6.75	4.2	10.45	4.22	4.42	7.49
Merged-chr1-24698635-1	chr1	24698135	24699135	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 3 of 15)	intron (NM_026719, intron 3 of 15)	19717.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	35.47	30.87	25.9	89.06	60.18	110.12	54.92	29.63	31.23
Merged-chr8-4329174-1	chr8	4328674	4329674	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033527, intron 2 of 5)	intron (NR_033527, intron 2 of 5)	3964.0	NR_033527	20300.0	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	6.29	5.07	7.4	4.72	1.87	8.84	7.39	5.31	13.12
Merged-chr2-166708750-1	chr2	166708250	166709250	+	725.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	RMER15|LTR|ERVL	5082.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	24.03	17.05	13.87	26.31	12.6	12.86	26.4	16.36	11.87
Merged-chr7-143614801-1	chr7	143614301	143615301	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175649, intron 5 of 7)	MTC|LTR|ERVL-MaLR	13044.0	NM_175649	244237.0	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	16.59	23.96	20.35	20.24	25.19	37.78	9.51	7.52	17.49
Merged-chr8-125727503-1	chr8	125727003	125728003	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	49.2	49.76	75.85	39.81	42.92	70.73	67.6	74.28	76.82
Merged-chr5-64326443-3	chr5	64325902	64326902	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	96045.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	27.46	17.51	38.85	27.66	42.92	44.21	10.56	7.07	8.74
Merged-chr11-97604036-2	chr11	97603528	97604528	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045496, intron 1 of 3)	intron (NR_045496, intron 1 of 3)	5517.0	NR_045496	69729.0	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	8.01	4.15	4.62	4.72	6.53	1.61	3.17	1.33	3.75
Merged-chr12-74013925-1	chr12	74013425	74014425	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	16164.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	3.43	5.99	11.1	2.7	3.73	3.22	2.11	3.98	2.5
Merged-chr15-67785826-1	chr15	67785326	67786326	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	473030.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.58	7.37	12.95	11.47	14.93	6.43	6.34	3.54	1.25
Merged-chr8-13675678-1	chr8	13675178	13676178	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1909.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	187.06	177.86	156.32	212.54	201.53	195.32	185.89	286.52	134.9
Merged-chr8-66861893-1	chr8	66861393	66862393	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	1676.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	37.76	29.95	32.37	26.31	15.86	17.68	20.07	11.94	12.49
Merged-chr18-45410950-1	chr18	45410450	45411450	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312905, intron 2 of 10)	ORR1B1|LTR|ERVL-MaLR	142090.0	NM_001312905	140492.0	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	1.14	1.38	0.92	0.67	5.6	2.41	2.11	1.33	0.0
Merged-chr6-5633200-2	chr6	5632704	5633704	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92435.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.0	2.3	1.85	0.67	0.93	5.63	3.17	0.88	5.0
Merged-chr7-16160891-1	chr7	16160391	16161391	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_148946)	TTS (NM_148946)	-14504.0	NM_001277988	17537.0	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	5.15	1.84	3.7	1.35	0.0	4.82	0.0	0.0	3.75
Merged-chr6-72201027-1	chr6	72200527	72201527	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34550.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	6.86	1.84	11.1	3.37	3.73	4.82	4.22	3.1	6.87
Merged-chr19-25137752-1	chr19	25137252	25138252	+	725.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 23 of 47)	intron (NM_028785, intron 23 of 47)	-99223.0	NM_181404	107351.0	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	41.19	50.23	25.9	41.83	28.92	23.31	90.83	78.26	48.71
Merged-chr6-43462938-1	chr6	43462438	43463438	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	intron (NR_045988, intron 1 of 2)	20509.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	19.45	23.96	20.35	23.62	21.46	20.09	21.12	18.57	9.37
Merged-chrX-135620463-1	chrX	135619963	135620963	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029459, intron 5 of 9)	L1MC4a|LINE|L1	7242.0	NM_029459	75829.0	Mm.159593	NM_029459	ENSMUSG00000031411	Prame	4930534P07Rik	preferentially expressed antigen in melanoma	protein-coding	3.43	7.37	1.85	2.02	7.93	11.25	5.28	3.98	2.5
Merged-chr11-34001856-2	chr11	34001347	34002347	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-8654.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	10.87	13.82	17.57	12.82	7.93	20.09	24.29	14.15	13.74
Merged-chr19-22304553-1	chr19	22304053	22305053	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	-143655.0	NM_177341	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	6.29	1.38	7.4	1.35	1.87	0.0	2.11	3.1	2.5
Merged-chr14-79661315-1	chr14	79660815	79661815	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010701, intron 2 of 6)	CpG	868.0	NM_001310655	16840.0	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	1.14	2.76	3.7	1.35	3.27	1.61	3.17	0.88	1.25
Merged-chr13-54956175-1	chr13	54955675	54956675	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153131, intron 1 of 15)	CpG	6764.0	NM_001311128	107448.0	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	5.72	1.38	7.4	4.72	0.93	3.22	4.22	0.0	3.75
Merged-chr18-30267898-1	chr18	30267398	30268398	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-4967.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	72.65	95.84	74.0	0.0	0.0	0.0	7.39	4.86	0.0
Merged-chr12-34997922-2	chr12	34997422	34998422	+	725.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13161.0	NM_029294	75456.0	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	6.29	5.99	2.77	4.05	4.67	14.47	1.06	0.88	3.12
Merged-chr17-80062922-1	chr17	80062422	80063422	+	725.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144802)	promoter-TSS (NM_144802)	-654.0	NM_144802	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	19.45	8.29	11.1	29.69	29.86	26.53	15.84	15.48	12.49
Merged-chr7-18925361-3	chr7	18924890	18925890	+	724.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029877)	promoter-TSS (NM_001029877)	-498.0	NM_001029877	384569.0	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	4.0	1.84	0.0	2.02	1.4	0.0	7.39	0.0	1.25
Merged-chr18-54987741-6	chr18	54987152	54988152	+	724.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175751, exon 2 of 10)	exon (NM_175751, exon 2 of 10)	2528.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	199.65	270.94	122.09	188.92	191.27	139.06	142.59	156.09	118.66
Merged-chr6-83450853-3	chr6	83450374	83451374	+	724.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347313, intron 2 of 11)	intron (NM_001347313, intron 2 of 11)	5518.0	NM_001347313	194388.0	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	13.16	26.26	37.0	20.92	21.46	36.97	26.4	26.09	28.1
Merged-chr19-32470182-3	chr19	32469697	32470697	+	724.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15572.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.0	4.15	0.0	9.45	2.33	0.0	6.34	1.33	3.12
Merged-chr14-25466430-2	chr14	25465910	25466910	+	724.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	7225.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	26.89	11.52	17.57	18.89	17.26	13.66	7.39	9.73	5.62
Merged-chr7-135658373-3	chr7	135657812	135658812	+	724.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	intron (NM_001316681, intron 3 of 17)	-5998.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	9.72	14.28	9.25	12.14	6.06	9.65	6.34	15.48	6.25
Merged-chr7-133154129-3	chr7	133153646	133154646	+	724.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25895.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	4.0	8.75	3.7	8.1	3.27	4.82	7.39	3.54	6.25
Merged-chr5-28243243-3	chr5	28242745	28243745	+	724.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	2543.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	8.58	3.23	7.4	3.37	5.6	13.66	7.39	5.31	13.12
Merged-chr6-116133935-3	chr6	116133438	116134438	+	724.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177412, exon 3 of 6)	exon (NM_177412, exon 3 of 6)	59436.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	25.17	51.61	22.2	51.95	33.12	61.89	44.36	32.72	28.73
Merged-chr1-181921783-2	chr1	181921294	181922294	+	724.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010135, exon 7 of 15)	exon (NM_010135, exon 7 of 15)	-79393.0	NM_133815	98386.0	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	17.73	8.75	16.65	11.47	10.26	20.09	20.07	7.96	8.12
Merged-chr18-62023315-3	chr18	62022808	62023808	+	724.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70233.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	11.44	5.53	5.55	2.02	4.2	4.02	6.34	5.31	3.75
Merged-chr15-64001610-3	chr15	64001118	64002118	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	-3552.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	23.45	14.28	13.87	20.92	28.46	15.27	23.24	10.61	9.37
Merged-chr1-24681229-3	chr1	24680724	24681724	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310483, intron 1 of 15)	RSINE1|SINE|B4	2306.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	21.17	24.88	23.12	32.39	13.53	34.56	48.58	33.16	10.62
Merged-chr17-45620033-3	chr17	45619554	45620554	+	724.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-17952.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	103.54	101.37	75.85	68.15	91.44	86.01	115.12	105.68	79.32
Merged-chr3-88335178-1	chr3	88334678	88335678	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024246)	promoter-TSS (NM_024246)	-745.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	20.59	19.81	32.37	24.29	8.4	22.51	20.07	22.11	20.61
Merged-chr16-18629999-2	chr16	18629488	18630488	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213614)	promoter-TSS (NM_213614)	-50.0	NM_213614	18951.0	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	4.58	2.76	0.0	4.72	0.47	4.82	1.06	0.88	0.0
Merged-chr6-86659147-2	chr6	86658641	86659641	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010751, intron 3 of 5)	intron (NM_010751, intron 3 of 5)	10018.0	NM_010751	17119.0	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	12.59	14.75	1.85	25.64	19.59	16.88	20.07	22.55	12.49
Merged-chr6-5365962-2	chr6	5365475	5366475	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17411.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	5.15	8.29	12.95	10.12	3.27	5.63	3.17	6.19	7.49
Merged-chr1-95596993-2	chr1	95596501	95597501	+	724.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	Lx8b|LINE|L1	70593.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	12.01	10.6	11.1	12.14	8.86	12.86	11.62	7.52	1.25
Merged-chr13-41505849-2	chr13	41505348	41506348	+	724.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18488.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	27.46	24.88	19.42	20.92	23.33	40.99	21.12	15.03	31.23
Merged-chr4-44233145-5	chr4	44232650	44233650	+	724.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11883.0	NR_039565	100628618.0		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	28.03	32.72	73.07	35.09	27.99	100.47	32.74	28.74	38.1
Merged-chr5-33821175-3	chr5	33820667	33821667	+	724.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21945.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	39.47	38.25	61.97	37.78	30.32	37.78	45.42	28.74	28.73
Merged-chr5-147899195-1	chr5	147898695	147899695	+	724.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4380.0	NM_027872	71706.0	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	4.0	4.61	0.0	6.07	2.33	0.0	2.11	4.86	6.25
Merged-chr4-136124766-3	chr4	136124284	136125284	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19038.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	50.34	30.41	35.15	50.6	18.66	25.72	81.33	59.69	34.97
Merged-chr6-48703782-1	chr6	48703282	48704282	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153175, intron 2 of 2)	intron (NM_153175, intron 2 of 2)	4462.0	NM_153175	231931.0	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	18.88	15.21	18.5	1.35	2.33	6.43	5.28	1.33	3.75
Merged-chr5-23844649-1	chr5	23844149	23845149	+	724.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025394)	promoter-TSS (NM_025394)	-504.0	NM_025394	66169.0	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7	protein-coding	108.12	97.69	51.8	40.48	32.19	53.85	94.0	101.26	91.18
Merged-chr14-45142768-3	chr14	45142278	45143278	+	724.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310534, intron 18 of 20)	intron (NM_001310534, intron 18 of 20)	76647.0	NM_172597	70561.0	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	3.43	5.07	3.7	6.07	4.2	3.22	5.28	3.98	1.25
Merged-chr13-24445435-2	chr13	24444934	24445934	+	724.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111110, intron 11 of 16)	L1MEf|LINE|L1	30312.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	38.33	64.05	37.0	43.18	45.72	43.4	62.31	57.48	35.6
Merged-chr12-98278463-3	chr12	98277955	98278955	+	724.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9820.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	23.45	20.27	36.07	37.11	23.79	23.31	35.91	11.05	31.23
Merged-chr4-5692467-3	chr4	5691964	5692964	+	724.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173426, intron 1 of 2)	MMERVK9C_I-int|LTR|ERVK	-31848.0	NM_001355716	242297.0	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	4.58	8.75	0.0	10.8	7.46	0.0	6.34	2.65	7.49
Merged-chr13-114954698-3	chr13	114954177	114955177	+	724.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22577.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	3.43	4.61	0.0	4.72	2.33	8.04	4.22	1.33	4.37
Merged-chr8-94919640-4	chr8	94919134	94920134	+	724.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1536.0	NM_001033533	234582.0	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	14.3	15.21	25.9	10.8	8.4	4.82	13.73	15.92	12.49
Merged-chr10-75860938-3	chr10	75860456	75861456	+	724.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010798)	promoter-TSS (NM_010798)	-706.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	25.17	19.35	16.65	16.87	15.86	19.29	17.96	12.38	16.24
Merged-chr13-117222085-2	chr13	117221595	117222595	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010330, intron 1 of 8)	intron (NM_010330, intron 1 of 8)	1522.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	4.0	3.23	0.0	4.05	5.13	9.65	3.17	4.86	2.5
Merged-chr1-135095334-1	chr1	135094834	135095834	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	9942.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	5.72	0.92	8.32	10.8	7.46	4.82	10.56	3.54	5.0
Merged-chr2-164960852-2	chr2	164960357	164961357	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355480)	promoter-TSS (NM_001355480)	11.0	NM_001355480	57138.0	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	9.72	8.29	12.95	8.77	0.47	1.61	17.96	8.84	8.12
Merged-chr18-64991675-3	chr18	64991188	64992188	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	MLT1J2|LTR|ERVL-MaLR	-31839.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.14	5.99	9.25	8.1	3.73	5.63	11.62	4.42	3.75
Merged-chr12-99883941-3	chr12	99883439	99884439	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028354)	promoter-TSS (NM_028354)	-497.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	32.61	62.21	36.07	37.11	55.05	38.58	64.43	76.94	39.97
Merged-chr8-64847416-1	chr8	64846916	64847916	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178633, intron 1 of 14)	intron (NM_178633, intron 1 of 14)	2508.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.0	2.76	2.77	6.07	6.06	12.86	7.39	5.31	1.25
Merged-chr2-163787916-2	chr2	163787411	163788411	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32923.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	3.43	0.92	1.85	2.7	2.8	3.22	1.06	1.33	7.49
Merged-chr1-24633867-1	chr1	24633367	24634367	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44677.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	5.72	3.23	1.85	4.05	3.27	4.82	3.17	1.77	1.25
Merged-chr11-97799044-3	chr11	97798549	97799549	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010688)	promoter-TSS (NM_010688)	-516.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	60.64	42.39	41.62	56.68	33.12	32.96	27.46	30.07	19.98
Merged-chr7-19328013-2	chr7	19327511	19328511	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17060.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	18.31	15.21	10.17	22.94	12.6	17.68	16.9	14.15	2.5
Merged-chr17-26499247-2	chr17	26498751	26499751	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	9221.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	33.75	24.42	21.27	22.27	15.39	11.25	19.01	10.17	28.73
Merged-chr19-46505112-2	chr19	46504613	46505613	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	3465.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	122.99	92.62	116.54	116.73	107.76	157.54	159.48	144.15	78.69
Merged-chr17-48323322-2	chr17	48322834	48323834	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177083, intron 5 of 5)	PB1D11|SINE|Alu	7172.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	49.77	80.64	67.52	56.68	60.65	83.59	110.9	93.3	52.46
Merged-chr11-106658571-1	chr11	106658071	106659071	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-45641.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	73.79	55.29	49.02	78.27	38.25	47.42	51.75	45.99	44.34
Merged-chr10-84411389-2	chr10	84410810	84411810	+	724.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 1 of 6)	intron (NM_001004363, intron 1 of 6)	29161.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	17.16	17.05	24.05	20.92	14.0	24.11	13.73	19.01	19.98
Merged-chr7-127480025-1	chr7	127479525	127480525	+	724.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5196.0	NM_010183	14123.0	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	148.16	172.33	156.32	95.14	96.57	102.88	123.57	160.06	125.53
Merged-chr5-102027391-1	chr5	102026891	102027891	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 2 of 66)	intron (NM_172882, intron 2 of 66)	42530.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	24.6	29.03	31.45	30.36	22.86	40.19	47.53	26.97	25.61
Merged-chr4-3767086-2	chr4	3766571	3767571	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	52107.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	53.2	47.46	41.62	41.83	23.33	36.97	38.02	69.86	34.97
Merged-chr9-21166932-2	chr9	21166443	21167443	+	724.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1229.0	NM_183408	18577.0	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	72.65	106.44	105.44	65.45	54.11	49.83	91.89	126.02	97.43
Merged-chr15-81745189-3	chr15	81744690	81745690	+	724.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081016, exon 1 of 23)	5' UTR (NM_001081016, exon 1 of 23)	342.0	NM_001081016	20286.0	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	14.3	8.29	4.62	21.59	9.33	16.88	10.56	11.5	5.0
Merged-chr4-86683469-3	chr4	86682979	86683979	+	724.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13420.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	6.86	4.61	0.0	6.07	1.87	1.61	3.17	3.1	2.5
Merged-chrX-38335587-2	chrX	38335089	38336089	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290389, exon 8 of 8)	3' UTR (NM_001290389, exon 8 of 8)	19467.0	NM_133690	67821.0	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	15.45	20.27	15.72	35.76	16.33	16.08	46.47	46.43	7.49
Merged-chr3-68666579-2	chr3	68666080	68667080	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24064.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	4.0	1.38	4.62	11.47	4.67	6.43	4.22	6.19	9.99
Merged-chr6-37316985-2	chr6	37316471	37317471	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16995.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	6.29	4.61	9.25	10.12	5.6	6.43	4.22	4.86	2.5
Merged-chr5-124444757-2	chr5	124444259	124445259	+	724.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310723)	promoter-TSS (NM_001310723)	-740.0	NM_001310723	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	70.36	62.21	61.97	79.62	64.84	65.11	76.05	85.34	46.22
Merged-chr7-19364086-3	chr7	19363558	19364558	+	724.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001010836, intron 1 of 12)	intron (NM_001010836, intron 1 of 12)	2842.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	8.01	0.92	3.7	2.02	0.47	0.0	2.11	1.33	1.25
Merged-chr15-83432866-1	chr15	83432366	83433366	+	724.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-16.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	34.9	15.21	11.1	24.29	22.39	19.29	19.01	12.82	20.61
Merged-chr3-60582264-1	chr3	60581764	60582764	+	724.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	81085.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	16.59	22.58	22.2	16.87	20.99	14.47	29.57	22.99	23.73
Merged-chr5-64896777-3	chr5	64896271	64897271	+	724.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35928.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.43	0.92	1.85	2.7	3.73	1.61	1.06	1.33	4.37
Merged-chr2-156967323-6	chr2	156966824	156967824	+	724.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355394, intron 1 of 15)	intron (NM_001355394, intron 1 of 15)	24379.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	146.45	161.74	110.99	126.17	120.83	121.37	152.09	190.13	81.81
Merged-chr15-62039192-3	chr15	62038735	62039735	+	724.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	-22.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	161.32	176.48	93.42	170.7	159.08	135.84	233.42	237.89	93.68
Merged-chr11-103264735-2	chr11	103264238	103265238	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	2663.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	134.43	190.76	164.64	103.91	77.91	75.56	174.27	190.13	100.55
Merged-chr10-8925459-2	chr10	8924946	8925946	+	724.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39376.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.0	2.76	3.7	12.82	3.73	1.61	19.01	10.61	13.12
Merged-chr5-72861897-2	chr5	72861397	72862397	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	6551.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	9.72	2.76	11.1	10.12	13.06	7.23	3.17	1.77	5.62
Merged-chr3-8931161-2	chr3	8930665	8931665	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001025261, exon 8 of 8)	exon (NM_001025261, exon 8 of 8)	-7308.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	12.59	10.6	14.8	14.17	7.93	16.08	5.28	5.31	7.49
Merged-chr6-50075465-2	chr6	50074969	50075969	+	724.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34772.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	21.74	14.75	16.65	18.22	12.6	16.08	3.17	4.86	3.75
Merged-chr7-28268080-1	chr7	28267580	28268580	+	724.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198425, exon 1 of 1)	exon (NM_198425, exon 1 of 1)	199.0	NM_198425	386655.0	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	8.58	10.14	9.25	24.29	8.4	8.84	8.45	4.42	1.25
Merged-chr2-18689531-3	chr2	18689078	18690078	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-9444.0	NM_001001334	381350.0	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	3.43	2.3	5.55	6.07	3.73	4.82	9.51	1.77	2.5
Merged-chr2-170170394-3	chr2	170169891	170170891	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27716.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	18.88	29.03	24.05	12.82	24.26	44.21	30.63	25.65	20.61
Merged-chr2-24571076-3	chr2	24570572	24571572	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-95473.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	10.87	7.37	20.35	6.75	4.2	13.66	6.34	1.33	2.5
Merged-chr18-39460982-3	chr18	39460476	39461476	+	724.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	26269.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	29.17	50.69	32.37	26.31	34.52	12.86	57.03	49.52	23.73
Merged-chr10-93051107-2	chr10	93050615	93051615	+	724.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	30481.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	3.43	4.61	4.62	6.07	0.47	1.61	5.28	3.98	0.0
Merged-chr3-36551906-2	chr3	36551418	36552418	+	724.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019393)	promoter-TSS (NM_019393)	-688.0	NM_019393	50911.0	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	14.87	15.67	6.47	10.8	15.39	20.09	11.62	24.32	6.25
Merged-chr4-59553721-2	chr4	59553237	59554237	+	724.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4373.0	NM_144904	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	18.31	6.45	6.47	14.84	14.93	6.43	11.62	1.77	9.37
Merged-chr17-45592984-3	chr17	45592472	45593472	+	724.1555179999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022880)	promoter-TSS (NM_022880)	-579.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	41.76	43.77	61.05	30.36	30.32	34.56	48.58	53.06	69.32
Merged-chr17-83485476-3	chr17	83484964	83485964	+	724.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28869.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	6.86	5.53	21.27	2.02	2.8	6.43	5.28	7.52	4.37
Merged-chr10-37156480-3	chr10	37155976	37156976	+	724.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17550.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	33.75	34.1	12.02	23.62	23.79	16.08	22.18	17.69	12.49
Merged-chr8-105453411-3	chr8	105452910	105453910	+	724.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033371, intron 6 of 10)	intron (NM_001033371, intron 6 of 10)	18012.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	5.15	4.15	7.4	7.42	10.73	12.06	10.56	5.31	8.74
Merged-chr9-113800852-3	chr9	113800337	113801337	+	724.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	7507.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	51.48	64.05	28.67	63.42	46.18	61.09	51.75	49.52	34.97
Merged-chr19-21439598-1	chr19	21439098	21440098	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010266, intron 1 of 13)	intron (NM_010266, intron 1 of 13)	33063.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	5.72	4.15	3.7	3.37	4.67	4.82	5.28	3.98	5.0
Merged-chr1-184067109-3	chr1	184066620	184067620	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	32739.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	10.87	8.75	5.55	14.17	13.06	8.84	11.62	15.03	9.99
Merged-chr10-20531871-1	chr10	20531371	20532371	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	16457.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	24.6	19.35	15.72	29.69	18.66	16.88	31.69	18.13	25.61
Merged-chr2-78915126-2	chr2	78914622	78915622	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356395, intron 4 of 5)	intron (NM_001356395, intron 4 of 5)	45444.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	8.01	2.3	0.0	5.4	1.4	0.0	1.06	2.65	1.25
Merged-chr12-4189240-2	chr12	4188745	4189745	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159537, intron 3 of 21)	intron (NM_001159537, intron 3 of 21)	44720.0	NM_134046	52504.0	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	30.89	38.71	44.4	53.3	42.92	63.5	21.12	27.86	10.62
Merged-chr7-99450926-2	chr7	99450418	99451418	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201352, intron 10 of 17)	intron (NM_201352, intron 10 of 17)	-15086.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	7.44	1.84	0.92	4.05	3.27	4.02	2.11	0.44	1.87
Merged-chr2-84094983-1	chr2	84094483	84095483	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153757.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.86	4.61	0.92	4.05	5.6	2.41	2.11	2.65	1.25
Merged-chr11-105467400-1	chr11	105466900	105467900	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10665.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	71.51	54.83	31.45	79.62	44.78	45.01	70.76	41.56	34.35
Merged-chr5-136135613-1	chr5	136135113	136136113	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	461.0	NM_027891	71735.0	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	56.06	50.23	41.62	82.99	66.24	70.73	44.36	63.23	46.22
Merged-chr18-76151180-1	chr18	76150680	76151680	+	724.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19372.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.57	1.84	0.0	2.02	0.0	0.0	2.11	2.21	1.25
Merged-chr16-38404404-1	chr16	38403904	38404904	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134102, intron 8 of 10)	MIRc|SINE|MIR	28741.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	13.73	7.37	3.7	16.19	14.0	12.86	9.51	5.75	9.99
Merged-chr2-167380591-1	chr2	167380091	167381091	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID2|SINE|ID	-31413.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	18.31	24.88	12.95	22.27	18.19	20.09	21.12	17.69	14.36
Merged-chr10-71326999-1	chr10	71326499	71327499	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16254.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	4.0	0.46	0.0	2.7	0.47	1.61	4.22	0.0	3.75
Merged-chrX-94616765-2	chrX	94616260	94617260	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7512.0	NR_153318	102640328.0	Mm.250777	NR_153318		LOC102640328	-	uncharacterized LOC102640328	ncRNA	12.01	8.75	5.55	6.75	9.33	12.86	1.06	0.0	1.25
Merged-chr12-91816215-1	chr12	91815715	91816715	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039089, intron 15 of 20)	intron (NM_001039089, intron 15 of 20)	-29779.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	2.86	2.76	1.85	4.72	4.67	4.82	4.22	1.33	3.12
Merged-chr8-68233134-1	chr8	68232634	68233634	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43394.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.72	4.61	1.85	4.05	2.33	4.82	4.22	3.98	1.25
Merged-chr4-124663200-2	chr4	124662703	124663703	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5557.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	2.86	1.84	1.85	7.42	1.87	0.0	3.17	3.54	8.74
Merged-chr6-127542241-1	chr6	127541741	127542741	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35734.0	NM_001033464	381812.0	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	5.72	0.0	0.92	1.35	0.93	1.61	1.06	0.0	1.25
Merged-chr10-99986937-1	chr10	99986437	99987437	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28884.0	NM_001347156	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	28.03	36.4	21.27	26.99	27.52	25.72	21.12	42.01	11.24
Merged-chrX-106030254-2	chrX	106029765	106030765	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	intron (NM_009726, intron 1 of 22)	3041.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	100.68	88.01	35.15	82.32	94.23	78.77	100.34	118.5	57.46
Merged-chr3-22087934-1	chr3	22087434	22088434	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	11282.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	25.17	21.66	27.75	10.8	12.6	14.47	19.01	16.8	13.12
Merged-chr7-66287746-1	chr7	66287246	66288246	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 19 of 33)	intron (NM_146191, intron 19 of 33)	93978.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	1.72	2.76	9.25	5.4	3.27	3.22	2.11	4.42	12.49
Merged-chr5-136087562-2	chr5	136087080	136088080	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039103, intron 1 of 19)	intron (NM_001039103, intron 1 of 19)	3664.0	NM_001039103	54153.0	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	42.33	43.77	46.25	37.11	28.46	41.8	49.64	59.25	33.72
Merged-chr5-50058444-2	chr5	50057955	50058955	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133911, intron 1 of 18)	CpG	541.0	NM_133911	70693.0	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	19.45	3.69	3.7	10.8	7.93	6.43	8.45	0.44	2.5
Merged-chr4-103285160-2	chr4	103284658	103285658	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027612, intron 1 of 8)	intron (NM_027612, intron 1 of 8)	5705.0	NM_027612	70941.0	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	6.86	6.91	19.42	14.17	5.13	8.84	0.0	3.98	5.0
Merged-chr9-100711130-2	chr9	100710626	100711626	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009282, intron 2 of 33)	intron (NM_009282, intron 2 of 33)	67678.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	16.02	22.12	12.95	8.1	8.86	16.88	7.39	5.75	3.75
Merged-chr5-72177114-1	chr5	72176614	72177614	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8925.0	NM_001356614	27784.0	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	2.86	5.53	3.7	5.4	4.67	3.22	4.22	0.88	3.12
Merged-chr2-27702601-1	chr2	27702101	27703101	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-6691.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	33.75	42.39	48.1	41.16	37.79	68.32	28.52	38.91	45.59
Merged-chr5-146233047-1	chr5	146232547	146233547	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153599, intron 1 of 12)	intron (NM_153599, intron 1 of 12)	1797.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.86	14.28	12.02	2.7	13.53	10.45	14.79	3.98	10.62
Merged-chr4-131913412-1	chr4	131912912	131913912	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_102394, exon 3 of 3)	non-coding (NR_102394, exon 3 of 3)	6617.0	NR_102394	545681.0	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	-	predicted gene 12992	ncRNA	8.58	4.61	1.85	14.17	9.33	28.13	4.22	1.77	5.0
Merged-chr11-103849659-1	chr11	103849159	103850159	+	724.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008740, intron 15 of 20)	RMER15|LTR|ERVL	75484.0	NM_009521	22415.0	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	11.44	3.69	4.62	4.05	5.6	8.04	1.06	1.33	3.75
Merged-chr16-18343259-1	chr16	18342759	18343759	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359110, intron 1 of 9)	intron (NM_001359110, intron 1 of 9)	651.0	NM_001359109	27883.0	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	22.88	24.42	27.75	32.39	24.26	28.13	24.29	21.67	31.85
Merged-chr12-41852169-1	chr12	41851669	41852669	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-366112.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	9.15	10.14	3.7	10.8	14.93	16.08	14.79	16.8	7.49
Merged-chr11-76579110-1	chr11	76578610	76579610	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1371.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	20.59	20.27	18.5	22.94	19.13	28.13	5.28	3.54	11.87
Merged-chr4-133968667-1	chr4	133968167	133969167	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016957)	promoter-TSS (NM_016957)	-676.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	27.46	15.67	14.8	23.62	19.59	38.58	24.29	14.59	15.61
Merged-chr11-18871845-1	chr11	18871345	18872345	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	147124.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.29	0.92	1.85	2.02	0.93	4.82	3.17	0.0	5.0
Merged-chr17-29010092-1	chr17	29009592	29010592	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-2097.0	NM_001357173	106504.0	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	28.03	30.41	10.17	38.46	31.26	32.96	27.46	16.36	19.98
Merged-chr19-34334518-1	chr19	34334018	34335018	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43859.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.29	1.84	0.0	2.02	2.33	1.61	4.22	0.88	2.5
Merged-chr8-79391656-1	chr8	79391156	79392156	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	7812.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	18.31	19.81	3.7	14.84	19.59	16.08	10.56	13.71	6.87
Merged-chr15-27925523-1	chr15	27925023	27926023	+	724.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	100325.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	63.5	54.37	28.67	72.87	68.11	33.76	61.26	55.71	23.73
Merged-chr2-34963242-4	chr2	34962837	34963837	+	723.974976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001326601	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	30.89	28.57	15.72	78.27	68.11	31.35	29.57	36.26	10.62
Merged-chr4-59352172-3	chr4	59351657	59352657	+	723.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	intron (NM_001163288, intron 10 of 16)	86476.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	89.81	125.79	80.47	114.7	91.44	114.94	72.88	70.3	68.7
Merged-chr13-107844600-3	chr13	107844100	107845100	+	723.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	45464.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	49.2	41.01	23.12	47.23	23.79	24.11	73.93	45.54	18.11
Merged-chr14-25790820-2	chr14	25790323	25791323	+	723.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21967.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	14.3	14.28	12.02	19.57	8.86	13.66	7.39	11.05	8.74
Merged-chr18-50066206-3	chr18	50065700	50066700	+	723.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	-12538.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	22.88	9.68	12.95	5.4	5.6	8.84	20.07	14.15	3.12
Merged-chr9-118926256-4	chr9	118925732	118926732	+	723.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133710)	promoter-TSS (NM_133710)	-304.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	9.15	8.75	11.1	11.47	13.06	12.86	10.56	5.75	0.0
Merged-chr6-88057043-2	chr6	88056544	88057544	+	723.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11774.0	NM_009005	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.58	6.91	7.4	6.07	3.27	12.86	2.11	4.42	1.25
Merged-chr2-170121438-2	chr2	170120934	170121934	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159683, intron 2 of 6)	intron (NM_001159683, intron 2 of 6)	9786.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	22.31	19.35	21.27	21.59	11.2	41.8	28.52	12.38	9.99
Merged-chr12-57244340-2	chr12	57243843	57244843	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	13918.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	9.15	4.61	3.7	6.75	3.73	3.22	1.06	2.21	1.25
Merged-chr11-119042049-2	chr11	119041558	119042558	+	723.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG-2901	-1145.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	30.89	11.98	10.17	21.59	5.6	5.63	10.56	13.71	3.12
Merged-chr7-118646482-2	chr7	118645988	118646988	+	723.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 5 of 17)	ORR1G|LTR|ERVL-MaLR	12752.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	1.72	1.38	3.7	0.0	3.73	8.04	15.84	7.07	5.0
Merged-chr9-114770452-3	chr9	114769936	114770936	+	723.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252479, intron 1 of 3)	intron (NM_001252479, intron 1 of 3)	11557.0	NM_133978	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	11.44	5.99	14.8	8.1	7.93	9.65	13.73	8.4	11.24
Merged-chr10-127616996-4	chr10	127616376	127617376	+	723.8125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	4272.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	41.19	51.15	65.67	63.42	62.05	113.33	89.78	77.38	56.21
Merged-chr4-148997632-2	chr4	148997145	148998145	+	723.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 3 of 8)	L2a|LINE|L2	-45323.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	9.72	10.14	9.25	10.8	12.13	16.88	6.34	3.98	3.75
Merged-chr17-26616912-1	chr17	26616412	26617412	+	723.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 3 of 9)	intron (NM_026170, intron 3 of 9)	55400.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	5.15	4.61	1.85	4.72	5.6	8.04	3.17	3.1	2.5
Merged-chr10-10132771-3	chr10	10132276	10133276	+	723.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-231736.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	14.87	5.99	12.02	23.62	14.93	11.25	17.96	4.42	15.61
Merged-chr18-56759339-3	chr18	56758850	56759850	+	723.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51537.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	3.43	3.23	7.4	4.72	0.93	0.0	2.11	1.77	5.0
Merged-chr6-142698165-3	chr6	142697663	142698663	+	723.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001044720, intron 2 of 39)	intron (NM_001044720, intron 2 of 39)	4111.0	NM_021041	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	1.72	2.76	9.25	5.4	2.8	1.61	2.11	0.88	5.0
Merged-chr14-51483242-1	chr14	51482742	51483742	+	723.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_3-LTR_MM|LTR|ERVK	31280.0	NM_009486	22301.0	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	4.0	6.45	3.7	8.1	4.2	7.23	16.9	13.27	2.5
Merged-chr6-3620659-1	chr6	3620159	3621159	+	723.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100726.0	NR_030612	100124468.0		NR_030612	ENSMUSG00000076357	Mir653	Mirn653|mir-653|mmu-mir-653	microRNA 653	ncRNA	2.29	1.84	5.55	1.35	2.33	1.61	4.22	3.54	0.0
Merged-chr1-64633322-1	chr1	64632822	64633822	+	723.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16154.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	4.58	3.69	4.62	6.75	3.27	3.22	11.62	3.54	0.0
Merged-chr7-4145983-2	chr7	4145492	4146492	+	723.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172736, exon 15 of 15)	3' UTR (NM_172736, exon 15 of 15)	3880.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	13.73	15.67	9.25	7.42	3.73	9.65	9.51	7.96	19.98
Merged-chr10-98951628-2	chr10	98951150	98952150	+	723.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	36498.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	17.16	27.19	27.75	31.71	27.06	28.94	28.52	18.57	24.36
Merged-chr16-33832849-2	chr16	33832384	33833384	+	723.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 1 of 14)	intron (NM_001145884, intron 1 of 14)	3219.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	65.21	70.96	40.7	45.88	69.98	73.14	99.28	101.7	58.71
Merged-chr17-12999281-2	chr17	12998771	12999771	+	723.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6732.0	NM_175394	60532.0	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	12.01	9.68	24.97	2.7	6.06	14.47	20.07	14.15	11.24
Merged-chr5-43845231-2	chr5	43844710	43845710	+	723.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23599.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	30.89	41.93	33.3	56.0	38.72	37.78	46.47	25.65	46.84
Merged-chr15-76350197-1	chr15	76349697	76350697	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025340, exon 2 of 9)	exon (NM_025340, exon 2 of 9)	913.0	NM_025340	106025.0	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	148.16	162.2	143.37	99.86	110.1	122.18	156.32	143.26	93.68
Merged-chr4-136179616-1	chr4	136179116	136180116	+	723.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177733, intron 2 of 6)	intron (NM_177733, intron 2 of 6)	-1166.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	8.58	12.9	5.55	8.77	11.66	12.86	22.18	16.36	9.99
Merged-chrX-48523735-3	chrX	48523225	48524225	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011228, intron 1 of 1)	intron (NM_011228, intron 1 of 1)	4440.0	NM_011228	19337.0	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	4.0	1.84	0.0	6.07	3.73	0.0	1.06	5.31	0.0
Merged-chr1-194977563-2	chr1	194977089	194978089	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_033564)	promoter-TSS (NR_033564)	-630.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	22.88	31.33	14.8	35.76	37.32	37.78	31.69	17.69	16.24
Merged-chr18-54979325-1	chr18	54978825	54979825	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	10855.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	97.25	71.42	40.7	64.77	37.79	24.11	46.47	48.64	34.97
Merged-chr4-126741645-2	chr4	126741132	126742132	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5363.0	NM_198960	332937.0	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	6.29	3.69	0.0	4.72	1.4	4.02	2.11	1.33	0.0
Merged-chr7-116490713-2	chr7	116490222	116491222	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID|SINE|ID	-13647.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	13.16	8.29	5.55	12.14	5.13	12.86	5.28	5.31	7.49
Merged-chr11-114896700-1	chr11	114896200	114897200	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170758, intron 3 of 6)	intron (NM_170758, intron 3 of 6)	6659.0	NM_170758	217303.0	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	53.77	79.25	66.6	53.3	53.18	90.83	71.82	64.56	62.45
Merged-chr4-152158333-3	chr4	152157810	152158810	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008236)	promoter-TSS (NM_008236)	-557.0	NM_001301805	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	2.86	5.99	7.4	9.45	4.67	14.47	4.22	2.21	1.25
Merged-chr7-97172364-3	chr7	97171864	97172864	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	90613.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	86.38	101.83	43.47	126.17	72.78	63.5	97.17	130.0	65.58
Merged-chr7-97822070-2	chr7	97821567	97822567	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	intron (NM_001357364, intron 1 of 14)	-20872.0	NM_001357363	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	14.3	6.91	7.4	14.17	6.53	11.25	13.73	5.31	3.75
Merged-chr14-70555823-2	chr14	70555291	70556291	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021877, intron 2 of 19)	intron (NM_021877, intron 2 of 19)	1735.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	1.72	0.46	0.0	2.7	1.87	0.0	1.06	3.1	0.0
Merged-chr17-64666121-1	chr17	64665621	64666621	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 6 of 21)	intron (NM_008549, intron 6 of 21)	64472.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	10.3	5.53	25.9	16.19	17.26	12.86	11.62	7.07	13.74
Merged-chr4-33338185-1	chr4	33337685	33338685	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305273, intron 7 of 15)	intron (NM_001305273, intron 7 of 15)	27874.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	4.58	5.07	2.77	10.12	10.73	6.43	5.28	8.4	3.75
Merged-chr7-25435631-1	chr7	25435131	25436131	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-22745.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	22.88	24.42	20.35	12.14	19.13	48.23	25.35	23.88	24.98
Merged-chr2-38534061-2	chr2	38533549	38534549	+	723.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	22173.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	4.0	3.69	8.32	4.05	3.27	4.82	3.17	3.1	5.0
Merged-chr5-135780632-2	chr5	135780146	135781146	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008617, intron 1 of 8)	intron (NM_008617, intron 1 of 8)	1997.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	5.15	6.45	1.85	10.8	1.87	11.25	7.39	10.61	10.62
Merged-chr13-115150809-2	chr13	115150299	115151299	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48835.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	2.86	7.37	12.95	16.19	18.66	15.27	17.96	9.73	13.12
Merged-chr15-13027693-1	chr15	13027193	13028193	+	723.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	145982.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.14	3.23	3.7	3.37	2.33	4.82	3.17	3.1	6.87
Merged-chr11-46269122-2	chr11	46268597	46269597	+	723.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 11 of 30)	intron (NM_001252459, intron 11 of 30)	33540.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	2.86	5.53	0.0	4.72	4.2	2.41	5.28	0.44	5.0
Merged-chr17-12892292-3	chr17	12891805	12892805	+	723.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034866, intron 14 of 18)	intron (NM_001034866, intron 14 of 18)	16271.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	10.3	5.07	4.62	10.12	3.27	11.25	12.67	3.98	2.5
Merged-chr10-75883370-3	chr10	75882855	75883855	+	723.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10043.0	NR_152573	70377.0	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	6.29	0.92	1.85	3.37	1.4	1.61	5.28	3.54	1.25
Merged-chr9-64100662-3	chr9	64100153	64101153	+	723.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16494.0	NM_145835	235435.0	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	4.58	1.38	3.7	1.35	3.73	2.41	5.28	1.33	2.5
Merged-chr11-74523762-3	chr11	74523275	74524275	+	723.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	66383.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	14.87	7.83	10.17	35.09	12.13	14.47	27.46	12.82	13.12
Merged-chr12-102419077-2	chr12	102418515	102419515	+	723.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	RLTR25B|LTR|ERVK	20798.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	73.22	57.6	49.95	73.54	74.64	79.58	64.43	72.07	46.84
Merged-chr19-6400472-2	chr19	6399988	6400988	+	723.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011242)	promoter-TSS (NM_011242)	-95.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	18.31	24.42	39.77	38.46	18.19	47.42	45.42	37.14	23.11
Merged-chr17-28950957-2	chr17	28950452	28951452	+	723.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1484.0	NM_001356300	66989.0	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	21.17	12.9	12.02	17.54	9.8	10.45	23.24	10.17	6.87
Merged-chr13-45911366-2	chr13	45910864	45911864	+	723.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	53627.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	92.1	71.88	59.2	79.62	63.45	78.77	24.29	29.63	21.86
Merged-chr6-50681869-1	chr6	50681369	50682369	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27476.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	3.43	5.07	0.0	5.4	3.27	4.82	4.22	1.77	3.75
Merged-chr15-51730991-3	chr15	51730519	51731519	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	134442.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	12.01	16.13	13.87	6.07	3.73	5.63	7.39	3.98	13.74
Merged-chr15-93298319-3	chr15	93297836	93298836	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	intron (NM_024189, intron 2 of 3)	-23157.0	NM_001346785	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	17.73	16.13	11.1	16.87	9.33	9.65	10.56	12.38	3.75
Merged-chr4-130308680-1	chr4	130308180	130309180	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010174)	promoter-TSS (NM_010174)	-98.0	NM_010174	14077.0	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	1.14	1.84	0.0	6.07	3.27	4.82	2.11	3.54	1.25
Merged-chr6-97788743-3	chr6	97788242	97789242	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-18316.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	8.01	4.61	11.1	6.07	4.2	14.47	13.73	6.19	8.12
Merged-chr7-24385064-3	chr7	24384564	24385564	+	723.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008433, exon 9 of 9)	3' UTR (NM_008433, exon 9 of 9)	-14564.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	4.58	4.61	3.7	5.4	0.93	4.82	4.22	1.77	6.25
Merged-chr15-83452119-1	chr15	83451619	83452619	+	723.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-4239.0	NM_001358644	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	13.16	8.75	2.77	6.75	4.2	4.82	10.56	4.86	11.24
Merged-chr15-68392114-3	chr15	68391616	68392616	+	723.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50827.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	5.72	7.83	0.92	6.75	2.8	4.02	7.39	8.84	3.12
Merged-chr5-101966938-1	chr5	101966438	101967438	+	723.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 5 of 66)	intron (NM_172882, intron 5 of 66)	102983.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	32.04	32.25	32.37	40.48	31.26	51.44	29.57	23.88	18.74
Merged-chr14-21854720-2	chr14	21854218	21855218	+	723.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5808.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	7.44	5.99	5.55	4.72	3.73	3.22	7.39	9.29	8.74
Merged-chr5-69557708-4	chr5	69557218	69558218	+	723.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310631, intron 1 of 14)	intron (NM_001310631, intron 1 of 14)	794.0	NM_001310631	231279.0	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	70.93	72.34	22.2	70.17	49.92	48.23	84.49	93.74	28.1
Merged-chr9-14187979-2	chr9	14187467	14188467	+	723.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88334.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	5.72	10.14	3.7	5.4	7.93	13.66	9.51	8.4	7.49
Merged-chr9-21297347-3	chr9	21296844	21297844	+	723.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110300, intron 9 of 10)	MTB_Mm|LTR|ERVL-MaLR	-6135.0	NM_009878	12581.0	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin dependent kinase inhibitor 2D	protein-coding	12.59	11.52	16.65	10.12	2.8	12.86	20.07	24.76	16.86
Merged-chr4-58504813-3	chr4	58504324	58505324	+	723.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	-5421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	9.15	5.53	26.82	10.12	4.2	7.23	26.4	15.48	5.62
Merged-chr11-55148974-3	chr11	55148418	55149418	+	723.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172258, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	2788.0	NM_172258	215332.0	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	36.61	22.12	28.67	29.01	15.39	39.39	41.19	30.51	18.11
Merged-chr1-21101390-3	chr1	21100904	21101904	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22179.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	6.29	3.23	8.32	4.05	0.93	3.22	4.22	2.21	3.75
Merged-chr5-75157241-3	chr5	75156716	75157716	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083316, intron 1 of 22)	intron (NM_001083316, intron 1 of 22)	1050.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	5.15	1.38	0.0	8.77	5.6	0.8	1.06	0.44	1.25
Merged-chr1-170907965-3	chr1	170907463	170908463	+	723.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	4978.0	NM_001029984	435653.0	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	6.86	3.23	0.92	6.07	9.33	4.02	4.22	3.1	3.75
Merged-chr16-14367009-2	chr16	14366432	14367432	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008576, intron 1 of 30)	ID2|SINE|ID	5374.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	17.16	11.06	21.27	19.57	11.2	16.08	13.73	11.05	13.74
Merged-chr15-83148515-2	chr15	83148001	83149001	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 1 of 7)	PB1|SINE|Alu	877.0	NM_178627	73826.0	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	178.48	196.75	178.52	178.8	195.93	227.47	185.89	158.74	161.13
Merged-chr2-154593250-2	chr2	154592736	154593736	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021534, intron 2 of 3)	intron (NM_021534, intron 2 of 3)	10437.0	NM_021534	59038.0	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	2.86	2.76	0.0	8.77	10.26	7.23	13.73	17.24	20.61
Merged-chr8-79323341-2	chr8	79322826	79323826	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28248.0	NR_045823	234479.0	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	4.0	4.15	3.7	14.84	3.73	6.43	7.39	3.98	4.37
Merged-chr14-118925069-2	chr14	118924592	118925592	+	723.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360412)	promoter-TSS (NM_001360412)	378.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	5.15	0.46	0.0	4.72	2.8	1.61	4.22	0.44	2.5
Merged-chr4-133139128-2	chr4	133138632	133139632	+	723.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	MER20|DNA|hAT-Charlie	8499.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	52.06	50.23	49.95	51.95	32.19	53.05	69.71	62.35	48.71
Merged-chr13-54575168-3	chr13	54574635	54575635	+	723.122192	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019968, exon 1 of 4)	exon (NM_019968, exon 1 of 4)	122.0	NM_019968	56795.0	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	42.9	35.02	44.4	26.31	35.45	53.85	39.08	19.46	16.86
Merged-chr5-24780391-3	chr5	24779892	24780892	+	723.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22549.0	NM_153076	214301.0	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	6.86	8.75	1.85	7.42	4.2	5.63	10.56	7.96	6.87
Merged-chr2-21054677-2	chr2	21054153	21055153	+	723.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85779.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	13.73	10.14	7.4	20.92	27.06	24.11	58.09	51.73	26.23
Merged-chr11-106498142-3	chr11	106497659	106498659	+	723.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2832.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	30.32	38.71	23.12	14.84	24.26	16.08	29.57	45.99	21.86
Merged-chr12-39510137-2	chr12	39509632	39510632	+	723.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	527244.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	2.86	2.76	3.7	2.7	6.53	3.22	4.22	2.21	5.62
Merged-chr3-135607299-2	chr3	135606782	135607782	+	723.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 13 of 24)	intron (NM_008689, intron 13 of 24)	84265.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	22.88	24.88	15.72	21.59	18.66	31.35	36.97	31.39	29.98
Merged-chr15-7878257-3	chr15	7877739	7878739	+	723.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	62689.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	5.72	9.68	2.77	19.57	21.93	14.47	7.39	4.86	6.25
Merged-chr5-88519449-3	chr5	88518947	88519947	+	723.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_152839)	TTS (NM_152839)	8450.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	7.44	3.69	1.85	2.02	3.27	6.43	4.22	4.86	5.0
Merged-chr4-129082922-3	chr4	129082449	129083449	+	723.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 8 of 8)	intron (NM_029219, intron 8 of 8)	-22581.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	25.74	29.03	12.02	30.36	20.99	24.11	19.01	20.78	11.87
Merged-chr18-34080684-1	chr18	34080184	34081184	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-73478.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	10.3	7.37	5.55	13.49	5.6	1.61	14.79	9.73	6.25
Merged-chr3-96333904-1	chr3	96333404	96334404	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11383.0	NR_152105	100504145.0	Mm.100443	NR_152105	ENSMUSG00000097851	Platr30	Gm17580	pluripotency associated transcript 30	ncRNA	10.3	6.91	5.55	6.07	2.8	1.61	3.17	6.63	0.0
Merged-chr13-70659891-3	chr13	70659387	70660387	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22253.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	7.44	4.61	7.4	2.02	7.93	6.43	4.22	1.33	6.25
Merged-chr3-41377074-2	chr3	41376576	41377576	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	116123.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	6.86	2.76	3.7	5.4	2.8	1.61	1.06	3.98	7.49
Merged-chr2-113573385-1	chr2	113572885	113573885	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 6 of 16)	intron (NM_001285459, intron 6 of 16)	-111705.0	NM_001287818	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	4.58	5.99	5.55	4.05	2.8	1.61	2.11	2.21	6.25
Merged-chr18-62111106-1	chr18	62110606	62111606	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68875.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	45.76	78.33	61.05	33.74	43.39	22.51	80.27	59.69	34.97
Merged-chr13-111984152-1	chr13	111983652	111984652	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	116216.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	16.59	10.14	7.4	6.75	4.2	1.61	4.22	5.31	3.75
Merged-chr14-33190909-2	chr14	33190411	33191411	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5845.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	21.17	15.67	21.27	19.57	13.06	16.08	12.67	18.57	16.24
Merged-chr15-89178485-1	chr15	89177985	89178985	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2303.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	125.85	146.99	117.47	103.23	112.9	130.21	146.81	176.42	133.65
Merged-chr7-110432435-1	chr7	110431935	110432935	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 13 of 40)	intron (NM_177324, intron 13 of 40)	182485.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.0	4.61	0.0	8.1	6.53	4.82	1.06	1.77	1.87
Merged-chr19-4741723-1	chr19	4741223	4742223	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021287, intron 19 of 36)	LTR16C|LTR|ERVL	-14802.0	NM_025717	66704.0	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	6.86	5.07	5.55	11.47	11.2	13.66	8.45	4.86	8.12
Merged-chr6-148682117-1	chr6	148681617	148682617	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4117.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	4.0	4.61	0.0	9.45	1.4	0.0	1.06	1.77	5.62
Merged-chr6-83162480-1	chr6	83161980	83162980	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027948, exon 4 of 4)	exon (NM_027948, exon 4 of 4)	-3444.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	13.16	4.61	0.0	11.47	7.93	12.06	7.39	5.31	6.25
Merged-chrX-96148377-1	chrX	96147877	96148877	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 2 of 12)	intron (NM_010833, intron 2 of 12)	52332.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	44.62	77.87	27.75	37.11	44.78	43.4	38.02	28.74	44.34
Merged-chr19-16123297-1	chr19	16122797	16123797	+	723.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-9534.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	40.04	40.09	26.82	35.09	15.86	33.76	81.33	73.4	49.96
Merged-chr9-106343542-1	chr9	106343042	106344042	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027354, intron 10 of 10)	intron (NM_027354, intron 10 of 10)	-25090.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.72	5.53	7.4	10.12	7.46	7.23	6.34	0.88	3.75
Merged-chr3-153565726-1	chr3	153565226	153566226	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011372, intron 1 of 4)	intron (NM_011372, intron 1 of 4)	159407.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	30.89	47.46	50.87	22.94	34.06	19.29	53.87	63.23	39.97
Merged-chr6-146913217-1	chr6	146912717	146913717	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	24723.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	4.0	1.38	1.85	10.8	5.13	6.43	8.45	5.75	6.25
Merged-chr4-154837336-1	chr4	154836836	154837836	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18864.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	7.44	1.38	0.0	1.35	0.47	0.0	1.06	5.75	3.75
Merged-chr4-106827954-1	chr4	106827454	106828454	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22947.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	5.15	1.38	7.4	1.35	2.8	6.43	2.11	3.54	9.99
Merged-chr18-39855891-1	chr18	39855391	39856391	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82394.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.29	10.6	11.1	14.17	9.33	23.31	19.01	7.07	7.49
Merged-chr10-128913432-3	chr10	128912937	128913937	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001282966)	TTS (NM_001282966)	3571.0	NM_007653	12512.0	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	5.72	0.92	1.85	6.07	0.93	4.82	1.06	0.0	0.0
Merged-chr15-86184277-2	chr15	86183805	86184805	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-1423.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	90.38	97.69	106.37	120.1	102.63	128.61	160.54	137.07	70.57
Merged-chr4-105353190-1	chr4	105352690	105353690	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	195843.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.57	3.69	12.02	2.02	3.27	1.61	2.11	3.1	1.25
Merged-chr3-37802877-2	chr3	37802375	37803375	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78515.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	3.43	1.38	0.0	2.7	0.93	3.22	4.22	2.21	3.75
Merged-chr12-73586271-1	chr12	73585771	73586771	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	1475.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	14.87	13.36	5.55	18.22	19.59	8.04	17.96	7.52	5.0
Merged-chrX-107032037-1	chrX	107031537	107032537	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56455.0	NM_001357810	78826.0	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	5.72	4.61	3.7	3.37	1.4	4.82	5.28	6.19	2.5
Merged-chr4-41712672-1	chr4	41712172	41713172	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027278, exon 2 of 2)	exon (NM_027278, exon 2 of 2)	845.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	15.45	4.15	5.55	14.17	12.6	9.65	11.62	13.71	15.61
Merged-chr7-123293196-2	chr7	123292705	123293705	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	76710.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	26.31	15.21	12.95	24.96	5.13	11.25	28.52	23.43	13.74
Merged-chr13-28557401-1	chr13	28556901	28557901	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 7 of 8)	ORR1E|LTR|ERVL-MaLR	153472.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	1.14	2.76	1.85	3.37	2.8	0.0	0.0	0.44	1.25
Merged-chr10-118041644-1	chr10	118041144	118042144	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-100143.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	49.2	47.46	70.3	49.93	48.05	65.91	3.17	3.1	5.0
Merged-chr7-64223400-2	chr7	64222906	64223906	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039104, intron 13 of 26)	intron (NM_001039104, intron 13 of 26)	17600.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	2.86	5.99	1.85	7.42	2.33	8.04	4.22	1.33	8.12
Merged-chr15-64242114-1	chr15	64241614	64242614	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	70559.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	104.69	103.68	80.47	128.2	77.44	87.61	119.35	100.81	79.32
Merged-chr1-43465158-2	chr1	43464696	43465696	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	19445.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	14.3	15.67	9.25	35.76	26.59	21.7	31.69	39.8	19.98
Merged-chr7-141436686-1	chr7	141436186	141437186	+	723.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360724, intron 1 of 9)	intron (NM_001360724, intron 1 of 9)	1188.0	NM_026646	68267.0	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	24.6	23.96	32.37	32.39	20.53	40.99	48.58	38.91	23.11
Merged-chr10-60375700-1	chr10	60375200	60376200	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	intron (NM_001252635, intron 37 of 68)	-24026.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	3.43	3.69	12.02	9.45	1.87	23.31	9.51	2.21	2.5
Merged-chr7-132308024-2	chr7	132307536	132308536	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	MER34A1|LTR|ERV1	-7628.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	8.01	18.43	18.5	10.12	5.13	4.02	9.51	4.86	11.24
Merged-chr5-101830089-1	chr5	101829589	101830589	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64959.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	3.43	5.99	8.32	5.4	1.87	4.82	9.51	3.98	6.87
Merged-chr11-116220654-1	chr11	116220154	116221154	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025276)	TTS (NM_025276)	4652.0	NR_004853	69681.0	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	7.44	2.76	0.0	11.47	1.87	3.22	3.17	1.77	1.87
Merged-chr16-30039362-3	chr16	30038867	30039867	+	723.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045878, exon 1 of 4)	non-coding (NR_045878, exon 1 of 4)	112.0	NR_045878	71528.0	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	2.29	2.3	1.85	4.72	0.0	4.82	5.28	1.77	6.25
Merged-chrX-169263591-1	chrX	169263091	169264091	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 8 of 14)	L1MC4a|LINE|L1	56781.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	1.14	5.53	1.85	2.02	2.33	3.22	3.17	3.98	2.5
Merged-chr5-65038445-1	chr5	65037945	65038945	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026667, intron 12 of 13)	MIR|SINE|MIR	68127.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	1.14	2.76	1.85	4.72	4.2	4.82	5.28	2.65	2.5
Merged-chr6-38810635-1	chr6	38810135	38811135	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	26676.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	9.15	11.52	11.1	14.84	17.26	27.33	4.22	3.98	10.62
Merged-chr4-108768710-1	chr4	108768210	108769210	+	723.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	LTR16B1|LTR|ERVL	12378.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	10.87	15.67	12.95	10.8	11.66	7.23	7.39	6.19	8.74
Merged-chr11-72041950-3	chr11	72041439	72042439	+	722.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144526)	promoter-TSS (NM_144526)	-563.0	NM_144526	109212.0	Mm.33118	NM_144526	ENSMUSG00000020808	Pimreg	2610008F03Rik|6720460F02Rik|AI115087|CATS|Fam64a	PICALM interacting mitotic regulator	protein-coding	12.01	6.91	5.55	8.1	5.13	14.47	14.79	5.75	3.75
Merged-chr4-114982756-3	chr4	114982254	114983254	+	722.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025647, intron 1 of 5)	B3|SINE|B2	4474.0	NM_025647	66588.0	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	24.03	37.32	26.82	12.14	21.93	25.72	65.48	74.73	39.35
Merged-chr16-16829367-3	chr16	16828886	16829886	+	722.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015773)	promoter-TSS (NM_015773)	-23.0	NM_015773	50525.0	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	9.15	3.69	1.85	14.84	6.53	6.43	4.22	3.54	3.75
Merged-chr5-149006262-2	chr5	149005729	149006729	+	722.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040429)	promoter-TSS (NR_040429)	-733.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	15.45	8.75	3.7	28.34	18.66	20.9	9.51	7.96	6.25
Merged-chr13-95044317-2	chr13	95043820	95044820	+	722.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172263, intron 12 of 19)	intron (NM_172263, intron 12 of 19)	67976.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	1.72	0.0	1.85	8.77	8.4	4.82	3.17	3.1	4.37
Merged-chr17-69204783-3	chr17	69204299	69205299	+	722.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 1 of 21)	Lx8b|LINE|L1	45443.0	NM_001355735	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	23.45	22.12	16.65	27.66	24.72	34.56	24.29	27.86	11.24
Merged-chr13-113612570-4	chr13	113612017	113613017	+	722.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6047.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	26.89	17.05	2.77	22.94	10.73	17.68	19.01	11.94	17.49
Merged-chr9-121305638-2	chr9	121305135	121306135	+	722.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	8133.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	13.73	7.37	9.25	18.22	6.53	13.66	12.67	13.27	14.99
Merged-chr1-177141664-3	chr1	177141170	177142170	+	722.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	107097.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	23.45	29.49	24.97	18.89	19.13	16.88	23.24	15.48	16.24
Merged-chr4-105275347-3	chr4	105274854	105275854	+	722.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	118007.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	9.72	8.29	12.95	13.49	9.33	8.04	11.62	9.73	9.99
Merged-chr17-81424562-3	chr17	81424071	81425071	+	722.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 7 of 8)	intron (NR_104580, intron 7 of 8)	313816.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	7.44	5.53	3.7	6.75	2.8	8.04	0.0	0.88	2.5
Merged-chr10-81393611-2	chr10	81393127	81394127	+	722.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099917, intron 1 of 3)	intron (NM_001099917, intron 1 of 3)	563.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	51.48	31.79	30.52	43.86	26.12	56.27	81.33	59.25	53.08
Merged-chr16-32688983-1	chr16	32688483	32689483	+	722.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15829.0	NM_001289443	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	7.44	2.3	0.0	7.42	3.27	6.43	2.11	0.44	3.75
Merged-chr16-30009765-2	chr16	30009274	30010274	+	722.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033631, intron 1 of 2)	intron (NR_033631, intron 1 of 2)	1107.0	NR_033631	100043102.0	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	40.62	38.71	61.97	46.56	38.25	63.5	84.49	54.83	59.33
Merged-chr4-136160306-3	chr4	136159778	136160778	+	722.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11996.0	NM_177733	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.0	6.45	1.85	2.7	2.33	3.22	2.11	0.88	5.62
Merged-chr6-146141429-2	chr6	146140920	146141920	+	722.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019923, intron 55 of 56)	intron (NM_019923, intron 55 of 56)	207298.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.29	4.61	3.7	6.75	4.67	9.65	7.39	7.96	2.5
Merged-chr3-153835829-1	chr3	153835329	153836329	+	722.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-8418.0	NM_025758	66772.0	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	0.0	2.76	1.85	3.37	2.8	0.0	1.06	2.21	1.25
Merged-chr8-94227474-3	chr8	94226960	94227960	+	722.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172410, intron 2 of 22)	intron (NM_172410, intron 2 of 22)	12896.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	12.59	16.59	28.67	18.22	20.53	10.45	20.07	11.94	11.24
Merged-chr14-63409360-2	chr14	63408837	63409837	+	722.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7850.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	38.9	42.85	31.45	43.18	48.52	46.62	42.25	36.26	8.74
Merged-chr1-39761564-2	chr1	39761049	39762049	+	722.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40560.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	24.03	34.1	28.67	34.41	39.19	43.4	26.4	38.47	20.61
Merged-chr10-94829572-3	chr10	94829084	94830084	+	722.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	114994.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	25.74	19.35	18.5	19.57	14.0	12.86	17.96	19.9	7.49
Merged-chr18-20888169-2	chr18	20887666	20888666	+	722.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	MTEa-int|LTR|ERVL-MaLR	7912.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	34.32	35.94	38.85	26.99	20.99	34.56	25.35	24.76	26.23
Merged-chr6-7858662-2	chr6	7858183	7859183	+	722.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_052993, intron 1 of 3)	Tigger1|DNA|TcMar-Tigger	13459.0	NM_052993	94192.0	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	4.0	10.6	1.85	12.14	7.46	1.61	9.51	6.19	6.25
Merged-chr12-112130386-3	chr12	112129894	112130894	+	722.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029590)	promoter-TSS (NR_029590)	-486.0	NR_029590	387199.0		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	29.17	12.9	0.0	17.54	11.66	6.43	3.17	6.63	1.25
Merged-chr19-41455209-3	chr19	41454696	41455696	+	722.600037	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-70056.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	28.6	15.21	17.57	62.75	25.19	29.74	15.84	22.99	1.87
Merged-chr2-33467696-3	chr2	33467200	33468200	+	722.594421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355611, intron 1 of 2)	intron (NM_001355611, intron 1 of 2)	832.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	64.07	50.23	34.22	61.4	52.72	32.15	62.31	40.24	16.86
Merged-chr9-56891614-3	chr9	56891103	56892103	+	722.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139001, intron 5 of 9)	intron (NM_139001, intron 5 of 9)	26499.0	NM_139001	121021.0	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	5.72	2.76	1.85	2.02	1.87	1.61	3.17	0.44	3.75
Merged-chr2-15056017-3	chr2	15055511	15056511	+	722.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029466, intron 1 of 5)	intron (NM_029466, intron 1 of 5)	649.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	71.51	63.13	20.35	60.05	63.45	30.54	69.71	73.4	24.98
Merged-chr4-48225875-2	chr4	48225380	48226380	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12665.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	8.01	13.36	9.25	8.77	9.33	16.08	12.67	8.84	3.75
Merged-chr10-94572115-1	chr10	94571615	94572615	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-3142.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	22.31	18.43	22.2	16.87	13.53	21.7	14.79	18.13	8.74
Merged-chr1-131246663-2	chr1	131246159	131247159	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1481.0	NM_018750	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	10.87	11.06	12.95	9.45	3.73	0.0	11.62	11.5	11.87
Merged-chr7-30806135-2	chr7	30805649	30806649	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14828.0	NM_001168512	233079.0	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	2.86	1.84	1.85	2.02	0.93	0.0	3.17	1.77	3.75
Merged-chr12-104228411-1	chr12	104227911	104228911	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009251, intron 3 of 6)	intron (NM_009251, intron 3 of 6)	-7736.0	NM_001353612	20715.0	Mm.312628	NM_009251		Serpina3g	2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3G	protein-coding	16.02	17.05	24.05	14.17	13.06	20.09	14.79	15.92	13.74
Merged-chr8-111061819-2	chr8	111061321	111062321	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5482.0	NM_028274	72544.0	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	9.15	3.69	9.25	6.07	4.67	6.43	8.45	8.84	7.49
Merged-chr1-55044859-2	chr1	55044356	55045356	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7914.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	9.15	5.07	3.7	6.07	4.67	9.65	5.28	4.42	7.49
Merged-chr14-104299280-2	chr14	104298766	104299766	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	168733.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.29	2.76	1.85	2.7	2.33	1.61	3.17	6.63	1.25
Merged-chr17-78797332-2	chr17	78796831	78797831	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081179, intron 21 of 35)	intron (NM_001081179, intron 21 of 35)	38050.0	NM_001081179	320473.0	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	13.73	10.6	0.0	8.77	12.6	8.04	5.28	7.96	5.0
Merged-chr13-12520265-2	chr13	12519787	12520787	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_133643, exon 1 of 6)	5' UTR (NM_133643, exon 1 of 6)	163.0	NM_133643	171211.0	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	2.29	3.69	1.85	5.4	5.13	8.84	1.06	3.1	2.5
Merged-chr4-119950316-1	chr4	119949816	119950816	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135638.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.72	3.23	5.55	6.75	3.27	7.23	3.17	2.21	6.25
Merged-chr12-55486425-2	chr12	55485925	55486925	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	6222.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	45.19	26.26	16.65	45.21	23.33	32.96	39.08	26.09	24.36
Merged-chr16-62786178-2	chr16	62785693	62786693	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178925, intron 1 of 5)	Lx8|LINE|L1	523.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	128.14	136.39	95.27	108.63	106.83	86.81	158.43	152.55	64.95
Merged-chr16-97431472-3	chr16	97430973	97431973	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019517, intron 8 of 8)	ID_B1|SINE|B4	31432.0	NM_010846	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	4.0	9.68	3.7	2.7	4.2	4.82	9.51	3.1	8.74
Merged-chr15-58791715-3	chr15	58791212	58792212	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 3 of 6)	tRNA-Ala-GCY_|tRNA|tRNA	31715.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	26.31	34.1	22.2	36.43	36.85	27.33	38.02	31.39	17.49
Merged-chr2-5577866-1	chr2	5577366	5578366	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	98180.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	7.44	2.76	9.25	18.89	10.26	6.43	4.22	3.1	8.12
Merged-chr19-45747651-3	chr19	45747150	45748150	+	722.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008723)	TTS (NM_008723)	1913.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	4.0	1.38	6.47	2.7	1.4	3.22	2.11	2.21	6.25
Merged-chr7-145124459-1	chr7	145123959	145124959	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83660.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	5.72	9.22	7.4	6.07	3.73	9.65	4.22	3.54	6.25
Merged-chr4-53307369-2	chr4	53306868	53307868	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37136.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	8.01	6.91	9.25	22.27	16.79	17.68	15.84	9.73	9.99
Merged-chr14-49154019-1	chr14	49153519	49154519	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18227.0	NM_027492	70646.0	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	1.72	5.07	0.0	3.37	1.4	5.63	2.11	1.33	3.75
Merged-chr8-72723816-1	chr8	72723316	72724316	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113248, intron 1 of 6)	CpG	546.0	NM_009188	20467.0	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	86.38	65.89	56.42	66.8	97.03	61.89	98.23	74.28	31.85
Merged-chrX-136742928-2	chrX	136742433	136743433	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168227)	promoter-TSS (NM_001168227)	-15.0	NM_001168227	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	48.05	67.74	32.37	38.46	56.91	54.66	64.43	72.96	41.84
Merged-chr1-87758529-1	chr1	87758029	87759029	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029846, intron 1 of 17)	intron (NM_029846, intron 1 of 17)	2518.0	NM_001205392	77040.0	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	8.01	12.44	23.12	6.07	3.27	14.47	1.06	7.52	10.62
Merged-chr8-109002110-1	chr8	109001610	109002610	+	722.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65250.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	5.15	9.22	12.95	10.8	3.27	1.61	6.34	3.98	3.75
Merged-chr5-24603146-3	chr5	24602661	24603661	+	722.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1159.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	1.72	5.07	0.0	9.45	15.39	16.88	3.17	3.1	8.12
Merged-chr11-101969002-3	chr11	101968474	101969474	+	722.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1959.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	7.44	6.45	0.0	4.05	7.46	3.22	5.28	5.75	1.87
Merged-chr5-124442650-2	chr5	124442072	124443072	+	722.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310725, intron 1 of 6)	intron (NM_001310725, intron 1 of 6)	2642.0	NM_001310725	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	13.16	14.28	16.65	16.87	14.93	12.86	24.29	15.92	20.61
Merged-chr11-97512530-4	chr11	97511942	97512942	+	722.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_018873, exon 20 of 20)	3' UTR (NM_018873, exon 20 of 20)	-12102.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	30.89	32.25	30.52	21.59	21.46	66.71	47.53	48.64	16.24
Merged-chr15-36683057-3	chr15	36682542	36683542	+	722.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74069.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	16.02	17.97	24.05	20.92	15.86	30.54	14.79	15.03	20.61
Merged-chr9-106369095-2	chr9	106368651	106369651	+	722.424988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153459, exon 1 of 3)	exon (NM_153459, exon 1 of 3)	519.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	45.76	50.69	57.35	45.88	63.45	70.73	62.31	54.83	44.34
Merged-chr12-40486647-2	chr12	40486171	40487171	+	722.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	40618.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	24.6	16.59	20.35	15.52	12.6	23.31	16.9	12.82	17.49
Merged-chr5-43236199-2	chr5	43235692	43236692	+	722.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028417)	promoter-TSS (NR_028417)	-838.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	12.01	9.68	5.55	25.64	27.06	8.04	28.52	25.2	23.11
Merged-chr1-191021334-2	chr1	191020821	191021821	+	722.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081259, intron 1 of 9)	intron (NM_001081259, intron 1 of 9)	-4030.0	NR_027298	100125339.0	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	-	RIKEN cDNA A230020J21 gene	ncRNA	9.15	11.52	5.55	14.84	14.46	11.25	15.84	17.69	5.62
Merged-chr5-100664238-6	chr5	100663727	100664727	+	722.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027978, intron 2 of 6)	intron (NM_027978, intron 2 of 6)	10029.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	25.74	20.27	41.62	24.29	21.46	20.9	36.97	30.07	27.48
Merged-chr4-132951220-2	chr4	132950716	132951716	+	722.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22879.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	36.61	28.57	34.22	22.94	38.72	55.46	36.97	43.77	62.45
Merged-chr6-22459619-2	chr6	22459127	22460127	+	722.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR48B|LTR|ERV1	-103546.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	13.16	14.75	1.85	15.52	17.26	9.65	11.62	9.73	17.49
Merged-chr4-149665601-2	chr4	149665082	149666082	+	722.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029837, intron 2 of 23)	intron (NM_001029837, intron 2 of 23)	-2266.0	NM_001164052	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	78.94	64.51	74.92	87.04	45.25	47.42	62.31	53.06	43.09
Merged-chr9-111037569-2	chr9	111037079	111038079	+	722.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008522, intron 14 of 16)	intron (NM_008522, intron 14 of 16)	18287.0	NM_008522	17002.0	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	12.59	11.98	1.85	12.82	10.73	12.06	23.24	10.61	14.99
Merged-chr18-5141541-1	chr18	5141041	5142041	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24190.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.86	9.22	10.17	18.22	4.2	24.92	8.45	6.63	6.25
Merged-chr12-72104719-1	chr12	72104219	72105219	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028687, intron 19 of 20)	intron (NM_028687, intron 19 of 20)	18880.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.57	1.84	7.4	3.37	0.93	2.41	0.0	4.86	0.62
Merged-chr6-21985926-3	chr6	21985413	21986413	+	722.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081351)	promoter-TSS (NM_001081351)	3.0	NM_001081351	214642.0	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	5.15	4.61	7.4	5.4	1.4	6.43	3.17	7.52	4.37
Merged-chr2-93456336-1	chr2	93455836	93456836	+	722.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040533, exon 3 of 3)	non-coding (NR_040533, exon 3 of 3)	3517.0	NR_040533	100038525.0	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	-	predicted gene 10804	ncRNA	5.72	7.83	0.0	13.49	7.93	3.22	5.28	2.65	5.0
Merged-chr7-100952873-3	chr7	100952382	100953382	+	722.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	11484.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	73.22	86.17	103.59	74.89	74.17	88.42	85.55	57.92	93.68
Merged-chr10-52232649-2	chr10	52232160	52233160	+	722.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347444)	promoter-TSS (NM_001347444)	-959.0	NM_001347444	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	5.15	8.75	0.0	12.14	6.53	4.82	9.51	5.75	1.87
Merged-chr11-47020161-2	chr11	47019664	47020664	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	209365.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	6.29	14.75	17.57	10.12	13.53	12.86	13.73	9.29	7.49
Merged-chr1-55665318-2	chr1	55664799	55665799	+	722.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	259353.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	11.44	13.36	9.25	7.42	8.86	5.63	22.18	7.07	18.11
Merged-chr4-136896016-2	chr4	136895499	136896499	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007572)	TTS (NM_007572)	2845.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	50.91	47.46	67.52	58.7	50.38	78.77	54.92	47.31	48.09
Merged-chr10-87107736-2	chr10	87107229	87108229	+	722.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029685, intron 2 of 5)	intron (NM_029685, intron 2 of 5)	49683.0	NM_029685	76640.0	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	7.44	8.29	0.0	4.05	9.8	4.82	1.06	3.54	3.75
Merged-chr2-114622739-3	chr2	114622229	114623229	+	722.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	32235.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	16.59	8.29	0.0	1.35	8.86	6.43	8.45	11.05	6.87
Merged-chr17-24644123-3	chr17	24643616	24644616	+	722.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023055, intron 2 of 6)	intron (NM_023055, intron 2 of 6)	841.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	12.01	13.36	12.95	16.19	14.0	16.88	9.51	13.71	14.36
Merged-chr1-54910055-3	chr1	54909549	54910549	+	722.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	16338.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	29.75	28.57	34.22	35.76	9.8	13.66	22.18	17.69	19.98
Merged-chr1-135112867-2	chr1	135112356	135113356	+	722.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153383, intron 25 of 36)	intron (NR_153383, intron 25 of 36)	-7580.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	1.72	2.3	3.7	4.05	1.87	4.02	2.11	0.0	1.25
Merged-chr17-12741510-3	chr17	12741020	12742020	+	722.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027773, intron 1 of 2)	CpG	209.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	8.01	4.15	1.85	5.4	2.8	0.0	12.67	6.63	1.25
Merged-chr13-3545113-2	chr13	3544600	3545600	+	722.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	intron (NM_008112, intron 1 of 10)	7025.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	18.88	40.09	30.52	17.54	28.46	40.99	46.47	34.49	29.35
Merged-chr18-60894371-3	chr18	60893885	60894885	+	722.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-17855.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	3.43	3.23	0.0	2.7	2.8	6.43	2.11	3.54	0.0
Merged-chr6-71166957-3	chr6	71166453	71167453	+	722.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22573.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	6.86	2.3	0.0	4.05	4.2	0.0	3.17	0.44	5.0
Merged-chr2-137114481-3	chr2	137113994	137114994	+	722.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013822, intron 2 of 25)	intron (NM_013822, intron 2 of 25)	2026.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.58	0.46	2.77	4.72	1.87	4.82	0.0	3.98	4.37
Merged-chr16-21778685-1	chr16	21778185	21779185	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023737, intron 1 of 6)	MLT1J|LTR|ERVL-MaLR	9149.0	NM_023737	74147.0	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	12.59	18.43	12.95	24.29	18.66	31.35	13.73	21.22	12.49
Merged-chr16-91387053-1	chr16	91386553	91387553	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	14270.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	40.04	50.23	49.95	66.12	35.45	55.46	46.47	44.22	34.97
Merged-chr10-122895244-2	chr10	122894747	122895747	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 6 of 9)	intron (NM_001110218, intron 6 of 9)	90477.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	13.73	9.68	3.7	19.57	4.2	8.84	9.51	4.42	5.62
Merged-chr6-39557581-1	chr6	39557081	39558081	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172477, exon 1 of 19)	5' UTR (NM_172477, exon 1 of 19)	253.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	1.14	2.76	7.4	6.07	1.87	4.82	4.22	0.44	2.5
Merged-chr12-57252811-2	chr12	57252314	57253314	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	L1_Mur3|LINE|L1	22389.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	5.15	3.69	4.62	4.72	5.13	2.41	3.17	2.21	1.25
Merged-chr9-32925994-1	chr9	32925494	32926494	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131058, intron 1 of 3)	intron (NR_131058, intron 1 of 3)	2972.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	5.72	3.69	3.7	6.07	2.8	4.02	4.22	3.98	1.25
Merged-chr3-41408030-2	chr3	41407526	41408526	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85173.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	20.02	16.13	7.4	22.27	12.6	4.82	12.67	11.05	3.75
Merged-chr13-69545200-2	chr13	69544722	69545722	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11358.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.01	3.69	8.32	2.02	3.27	3.22	2.11	0.88	4.37
Merged-chr16-27385351-1	chr16	27384851	27385851	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	-3605.0	NM_001025615	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	16.02	14.28	11.1	15.52	15.86	14.47	20.07	8.4	8.12
Merged-chr3-53027551-1	chr3	53027051	53028051	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10328.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	4.58	1.84	1.85	0.67	4.2	1.61	3.17	3.1	6.87
Merged-chr4-53303696-1	chr4	53303196	53304196	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33464.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	7.44	3.69	1.85	7.42	5.13	6.43	6.34	3.1	3.75
Merged-chr11-20926102-1	chr11	20925602	20926602	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94994.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	8.01	10.6	4.62	15.52	4.67	16.08	6.34	10.17	9.99
Merged-chr16-84991454-1	chr16	84990954	84991954	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 12 of 15)	PB1D10|SINE|Alu	19243.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	14.3	15.67	26.82	18.89	20.99	14.47	15.84	9.73	11.24
Merged-chr3-96716024-1	chr3	96715524	96716524	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028925, intron 9 of 14)	intron (NM_028925, intron 9 of 14)	-7464.0	NM_030094	78373.0	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	6.86	4.61	12.95	6.75	10.26	27.33	6.34	4.86	16.24
Merged-chr11-45008277-1	chr11	45007777	45008777	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007897)	TTS (NM_007897)	108651.0	NR_045100	100504255.0	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	-	predicted gene 12159	ncRNA	3.43	3.69	5.55	4.72	0.93	4.02	0.0	1.33	3.75
Merged-chr14-54227770-3	chr14	54227296	54228296	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26133.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	35.47	17.05	7.4	16.87	18.66	13.66	33.8	18.57	14.99
Merged-chr7-105745005-3	chr7	105744508	105745508	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020024)	promoter-TSS (NM_020024)	-670.0	NM_020024	24075.0	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	125.28	92.16	118.39	75.57	81.17	76.36	133.08	129.11	100.55
Merged-chr7-31126377-1	chr7	31125877	31126877	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011322, intron 1 of 5)	intron (NM_011322, intron 1 of 5)	646.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	74.37	49.3	66.6	60.72	49.92	44.21	91.89	42.45	47.46
Merged-chr6-3749792-1	chr6	3749292	3750292	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001042725, intron 3 of 14)	intron (NM_001042725, intron 3 of 14)	13831.0	NM_001042725	12311.0	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr|Ct-r	calcitonin receptor	protein-coding	4.58	4.61	0.0	4.72	1.87	3.22	1.06	4.42	2.5
Merged-chr16-77014888-1	chr16	77014388	77015388	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	819.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	119.56	128.56	98.97	87.04	66.71	57.07	142.59	144.15	73.07
Merged-chr14-76909713-1	chr14	76909213	76910213	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	126904.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	0.57	2.76	3.7	0.0	1.87	1.61	1.06	1.77	6.25
Merged-chr1-131934760-3	chr1	131934256	131935256	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175294, exon 7 of 7)	3' UTR (NM_175294, exon 7 of 7)	24298.0	NM_175294	98415.0	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	56.63	49.76	30.52	43.86	30.79	11.25	53.87	65.88	28.73
Merged-chr7-74555580-1	chr7	74555080	74556080	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023908)	promoter-TSS (NM_023908)	-800.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	4.58	3.23	0.0	6.75	1.87	0.0	6.34	5.75	1.25
Merged-chr13-5844888-2	chr13	5844388	5845388	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13204.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	80.66	94.92	24.05	87.04	91.44	85.2	67.6	77.38	28.73
Merged-chrX-100480510-3	chrX	100480019	100481019	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13772.0	NM_008784	18518.0	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	1.14	3.23	0.0	1.35	1.87	1.61	2.11	2.65	0.0
Merged-chr1-172513587-2	chr1	172513087	172514087	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7543.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	199.65	159.43	44.4	121.45	66.71	44.21	238.7	308.19	150.51
Merged-chr3-35930073-2	chr3	35929584	35930584	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033623)	promoter-TSS (NM_033623)	-10.0	NM_033623	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	8.58	12.44	12.95	8.77	8.4	11.25	12.67	9.73	6.25
Merged-chr2-79107881-2	chr2	79107381	79108381	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147545.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	14.87	9.22	5.55	12.82	14.93	9.65	11.62	12.82	3.75
Merged-chr19-38352905-1	chr19	38352405	38353405	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43075.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	6.86	1.84	1.85	1.35	0.93	1.61	2.11	0.44	2.5
Merged-chr4-132269033-1	chr4	132268533	132269533	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	1153.0	NR_002865	353373.0	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	28.6	30.87	32.37	18.89	26.59	20.9	31.69	34.05	24.98
Merged-chr11-120233718-1	chr11	120233218	120234218	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198423, intron 1 of 27)	intron (NM_198423, intron 1 of 27)	771.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	5.72	4.15	12.95	4.72	4.67	4.82	36.97	19.9	15.61
Merged-chr5-113814553-1	chr5	113814053	113815053	+	722.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-14201.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	8.01	5.53	3.7	2.02	1.87	4.82	3.17	1.33	7.49
Merged-chr4-133160419-1	chr4	133159919	133160919	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	RSINE1|SINE|B4	29786.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	166.47	132.25	107.29	150.46	113.36	123.78	175.33	162.72	73.69
Merged-chr1-54762804-1	chr1	54762304	54763304	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 7 of 27)	intron (NM_001081433, intron 7 of 27)	163583.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	16.02	17.97	34.22	16.87	14.0	16.88	21.12	23.43	11.87
Merged-chr13-64309245-1	chr13	64308745	64309745	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025370, intron 2 of 5)	intron (NM_025370, intron 2 of 5)	3465.0	NM_025370	66129.0	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	21.74	29.95	19.42	19.57	21.46	29.74	15.84	7.52	9.37
Merged-chr8-13678439-1	chr8	13677939	13678939	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009025)	promoter-TSS (NM_009025)	-852.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	16.02	12.9	10.17	21.59	11.2	8.04	13.73	18.57	8.74
Merged-chr11-75193878-1	chr11	75193378	75194378	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177708)	promoter-TSS (NM_177708)	-115.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	1.72	3.23	3.7	4.05	1.87	4.82	0.0	1.77	0.62
Merged-chr2-35199758-1	chr2	35199258	35200258	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	intron (NM_026697, intron 1 of 7)	1362.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	59.49	59.9	59.2	46.56	49.45	45.01	86.61	77.82	55.58
Merged-chr10-37342498-2	chr10	37342003	37343003	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-203577.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	23.45	15.67	14.8	16.87	13.53	15.27	24.29	6.63	15.61
Merged-chr13-47214291-1	chr13	47213791	47214791	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	20288.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	48.05	51.15	46.25	41.16	68.11	83.59	39.08	35.37	33.72
Merged-chr5-5373382-1	chr5	5372882	5373882	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	6869.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	10.3	11.06	9.25	6.75	7.93	4.82	7.39	7.52	5.62
Merged-chr18-4343363-2	chr18	4342884	4343884	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	9569.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	37.76	33.64	39.77	41.16	42.45	50.64	68.65	43.77	28.1
Merged-chr10-121603714-1	chr10	121603214	121604214	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359618, intron 17 of 24)	intron (NM_001359618, intron 17 of 24)	-16920.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	3.43	3.23	0.0	10.12	2.8	4.02	5.28	3.98	9.99
Merged-chr6-140767048-1	chr6	140766548	140767548	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140163.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	111.55	185.7	73.07	130.9	152.08	118.16	190.11	265.74	100.55
Merged-chr3-116072740-1	chr3	116072240	116073240	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56948.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.29	5.53	4.62	4.72	9.8	3.22	8.45	5.75	5.62
Merged-chr9-47655069-1	chr9	47654569	47655569	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	124717.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	28.6	38.71	22.2	47.9	43.39	26.53	14.79	16.36	6.25
Merged-chr5-123831954-2	chr5	123831456	123832456	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33560.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	10.87	10.14	0.92	23.62	7.0	6.43	50.7	42.45	14.36
Merged-chr17-81663143-1	chr17	81662643	81663643	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	75244.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	16.02	13.82	11.1	20.92	11.2	18.49	21.12	13.71	15.61
Merged-chr5-143059043-3	chr5	143058531	143059531	+	722.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53989.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	61.21	91.24	84.17	61.4	34.99	75.56	66.54	61.46	46.22
Merged-chr19-44578243-1	chr19	44577743	44578743	+	722.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	15389.0	NM_176958	319594.0	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	1.14	4.61	16.65	3.37	1.4	9.65	5.28	2.21	1.87
Merged-chr1-131867872-2	chr1	131867375	131868375	+	721.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144875, intron 2 of 5)	intron (NM_144875, intron 2 of 5)	598.0	NM_144875	226422.0	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	122.99	115.2	50.87	138.99	111.5	67.52	103.51	97.72	70.57
Merged-chr11-57802031-2	chr11	57801534	57802534	+	721.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131042)	promoter-TSS (NR_131042)	397.0	NM_001081168	50724.0	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	10.87	16.13	18.5	18.22	13.53	25.72	25.35	7.96	9.99
Merged-chrX-166329059-2	chrX	166328555	166329555	+	721.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	-15498.0	NM_001177958	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	3.43	4.15	0.0	2.02	3.73	4.82	9.51	3.98	3.75
Merged-chr8-11187748-3	chr8	11187255	11188255	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125050.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	8.01	2.3	0.0	2.7	4.67	1.61	0.0	0.88	7.49
Merged-chr1-173441279-1	chr1	173440779	173441779	+	721.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	20675.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	17.16	20.74	6.47	6.07	12.13	15.27	10.56	9.29	1.87
Merged-chr11-11667710-3	chr11	11667156	11668156	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18269.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	49.2	33.64	42.55	39.81	24.72	45.01	38.02	41.56	23.73
Merged-chr8-73350531-3	chr8	73350032	73351032	+	721.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 1 of 15)	intron (NM_001317391, intron 1 of 15)	3008.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.58	4.15	1.85	1.35	6.53	5.63	1.06	2.21	2.5
Merged-chr3-41528756-2	chr3	41528273	41529273	+	721.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130791)	promoter-TSS (NR_130791)	-299.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	9.72	6.91	12.95	4.05	11.66	14.47	8.45	4.42	6.87
Merged-chr5-30848782-2	chr5	30848284	30849284	+	721.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-13023.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	50.34	74.19	57.35	75.57	66.24	63.5	74.99	90.2	48.71
Merged-chr18-76949014-3	chr18	76948514	76949514	+	721.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361227, intron 1 of 6)	intron (NM_001361227, intron 1 of 6)	4630.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	15.45	17.05	15.72	18.22	14.46	24.11	21.12	23.43	11.87
Merged-chr6-146640784-3	chr6	146640291	146641291	+	721.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1788.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	9.15	13.82	18.5	10.8	6.53	25.72	7.39	7.52	13.74
Merged-chr16-76977173-3	chr16	76976632	76977632	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33749.0	NR_040573	76601.0	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	10.3	10.14	17.57	10.8	5.6	9.65	10.56	20.78	23.11
Merged-chr15-103358045-2	chr15	103357529	103358529	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314041, intron 3 of 30)	intron (NM_001314041, intron 3 of 30)	-7504.0	NR_105928	102466775.0		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	18.88	12.9	12.95	12.14	8.86	8.04	9.51	2.65	7.49
Merged-chr2-66132094-2	chr2	66131596	66132596	+	721.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7303.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	5.72	2.3	0.0	1.35	3.27	1.61	9.51	4.86	8.12
Merged-chr11-8545969-3	chr11	8545472	8546472	+	721.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 7 of 30)	intron (NM_001083587, intron 7 of 30)	118563.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.43	6.91	1.85	3.37	2.33	1.61	5.28	5.75	11.24
Merged-chr8-80969691-3	chr8	80969189	80970189	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	45217.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	13.16	18.43	14.8	13.49	15.86	32.15	21.12	11.5	10.62
Merged-chr11-100735638-3	chr11	100735119	100736119	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2596.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	72.65	68.66	64.75	56.68	52.25	81.18	78.16	93.74	51.21
Merged-chr5-147071237-1	chr5	147070737	147071737	+	721.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	5335.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	20.59	18.43	16.65	38.46	9.8	16.88	4.22	2.65	11.24
Merged-chrX-36129987-3	chrX	36129483	36130483	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 2 of 10)	intron (NM_133990, intron 2 of 10)	17875.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	77.23	88.47	35.15	49.25	34.52	51.44	49.64	49.96	51.21
Merged-chr8-68092845-3	chr8	68092358	68093358	+	721.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118284.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	5.72	3.23	0.92	6.07	5.13	3.22	6.34	9.73	4.37
Merged-chr10-26751045-2	chr10	26750536	26751536	+	721.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21476.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	4.0	4.15	1.85	7.42	1.4	4.82	5.28	5.75	0.0
Merged-chr9-106903967-2	chr9	106903475	106904475	+	721.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153413, intron 49 of 52)	intron (NM_153413, intron 49 of 52)	-12037.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	3.43	3.23	3.7	2.7	3.73	0.0	6.34	8.84	7.49
Merged-chr4-3090165-2	chr4	3089687	3090687	+	721.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-81896.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	4.0	4.61	0.92	2.02	5.6	1.61	2.11	1.77	5.0
Merged-chr5-103778446-2	chr5	103777947	103778947	+	721.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080798, intron 1 of 19)	intron (NM_001080798, intron 1 of 19)	23874.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	14.3	6.91	12.02	10.12	7.46	6.43	8.45	4.42	8.12
Merged-chr8-77341888-2	chr8	77341398	77342398	+	721.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 18 of 22)	AT_rich|Low_complexity|Low_complexity	-175158.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	8.58	7.83	5.55	9.45	9.33	10.45	7.39	4.86	7.49
Merged-chr1-170632570-3	chr1	170632067	170633067	+	721.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11965.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	2.86	3.69	1.85	7.42	1.4	0.0	0.0	3.1	0.62
Merged-chr14-27351213-2	chr14	27350711	27351711	+	721.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-10178.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	99.54	152.06	114.69	103.23	117.09	138.25	104.56	99.05	79.94
Merged-chr2-5592599-3	chr2	5592091	5593091	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	83455.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	18.88	14.28	4.62	43.18	26.59	26.53	8.45	11.94	9.99
Merged-chr11-80175544-3	chr11	80175062	80176062	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-8310.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	164.75	167.26	115.62	164.63	102.17	177.64	183.78	214.89	109.92
Merged-chr10-78164114-3	chr10	78163627	78164627	+	721.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138601, intron 5 of 6)	intron (NM_138601, intron 5 of 6)	5641.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	6.86	1.38	0.0	4.05	0.93	3.22	0.0	1.33	2.5
Merged-chr4-101314759-2	chr4	101314252	101315252	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32275.0	NR_029537	387143.0		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	8.01	3.69	3.7	4.72	0.47	3.22	6.34	1.33	1.25
Merged-chr1-157407724-1	chr1	157407224	157408224	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-4628.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	18.31	15.21	16.65	27.66	19.59	25.72	10.56	13.27	11.24
Merged-chr5-25082791-1	chr5	25082291	25083291	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	17851.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	5.72	1.84	3.7	8.77	7.93	4.82	3.17	2.21	5.0
Merged-chr13-3805875-1	chr13	3805375	3806375	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1557.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	5.72	4.15	3.7	3.37	8.4	6.43	8.45	2.65	11.24
Merged-chr13-109821872-1	chr13	109821372	109822372	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-81937.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	12.01	3.23	3.7	12.82	11.66	8.04	6.34	2.65	1.87
Merged-chr10-22701138-1	chr10	22700638	22701638	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	28294.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	11.44	9.22	14.8	18.22	14.46	19.29	4.22	4.42	8.12
Merged-chr18-66291840-2	chr18	66291326	66292326	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178793)	promoter-TSS (NM_178793)	12.0	NM_178793	320924.0	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	2.29	0.92	8.32	1.35	0.47	4.82	1.06	0.44	2.5
Merged-chr18-53090525-1	chr18	53090025	53091025	+	721.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-85767.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	9.72	6.45	10.17	4.05	2.33	1.61	22.18	19.9	14.99
Merged-chr4-59349919-1	chr4	59349419	59350419	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163288, exon 12 of 17)	exon (NM_001163288, exon 12 of 17)	88714.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	51.48	65.89	61.05	56.68	44.32	45.82	15.84	8.84	11.87
Merged-chr9-120434026-1	chr9	120433526	120434526	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144557, intron 10 of 16)	intron (NM_144557, intron 10 of 16)	-58580.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	2.29	3.69	0.92	4.72	0.0	4.02	0.0	1.33	3.75
Merged-chr2-72410120-1	chr2	72409620	72410620	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 11 of 19)	intron (NM_023057, intron 11 of 19)	-66099.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	8.01	3.69	3.7	4.72	0.93	1.61	4.22	0.88	3.75
Merged-chr16-42165117-2	chr16	42164613	42165613	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361282, intron 9 of 10)	intron (NM_001361282, intron 9 of 10)	138356.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	3.43	2.76	1.85	2.7	4.67	0.0	2.11	2.21	2.5
Merged-chr8-27172251-2	chr8	27171747	27172747	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029423, intron 1 of 4)	intron (NM_029423, intron 1 of 4)	2399.0	NM_029423	75767.0	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	6.29	3.69	10.17	5.4	2.8	3.22	4.22	3.54	0.0
Merged-chr15-101275851-2	chr15	101275350	101276350	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8451.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	6.29	6.45	19.42	2.7	3.27	12.86	8.45	13.27	13.12
Merged-chr10-44005865-2	chr10	44005385	44006385	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	14.87	10.14	12.95	10.8	8.4	8.04	11.62	7.96	5.0
Merged-chr12-70235368-2	chr12	70234857	70235857	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7516.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.57	3.23	1.85	4.05	3.73	1.61	6.34	6.63	9.99
Merged-chr11-107229181-2	chr11	107228683	107229683	+	721.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 7 of 9)	B4A|SINE|B4	-39802.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	10.3	6.45	7.4	4.72	7.93	8.04	4.22	2.21	6.25
Merged-chrX-152144341-1	chrX	152143841	152144841	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114664)	promoter-TSS (NM_001114664)	73.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	3.43	1.38	5.55	5.4	1.87	5.63	5.28	0.44	3.12
Merged-chr11-93861478-2	chr11	93860968	93861968	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013375, intron 12 of 13)	intron (NM_001013375, intron 12 of 13)	24298.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	8.58	9.68	19.42	19.57	25.66	24.11	11.62	10.61	6.87
Merged-chr11-85492474-2	chr11	85491969	85492969	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 14 of 25)	intron (NM_138681, intron 14 of 25)	139305.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	4.58	5.07	10.17	22.27	22.86	27.33	10.56	11.5	2.5
Merged-chr5-23115615-1	chr5	23115115	23116115	+	721.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029990, intron 2 of 2)	RLTR11A|LTR|ERVK	318738.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	5.72	4.15	0.0	8.77	9.33	16.88	6.34	6.63	2.5
Merged-chr8-36267462-2	chr8	36266975	36267975	+	721.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-17959.0	NM_001081150	244421.0	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	3.43	2.3	3.7	4.05	1.87	6.43	3.17	0.0	5.62
Merged-chr5-86069608-3	chr5	86069118	86070118	+	721.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2128.0	NM_019992	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	24.6	23.96	16.65	12.82	7.93	11.25	13.73	16.36	8.74
Merged-chr9-120766497-1	chr9	120765997	120766997	+	721.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	148753.0	NR_040742	76402.0	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.58	1.84	0.92	8.77	3.73	4.82	2.11	1.33	5.0
Merged-chr2-104740451-3	chr2	104740011	104741011	+	721.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144804, intron 1 of 8)	B3|SINE|B2	2290.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	24.6	11.06	10.17	16.87	18.19	20.9	11.62	10.17	6.25
Merged-chr9-64793093-3	chr9	64792571	64793571	+	721.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17940.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	21.74	24.42	7.4	27.66	27.06	14.47	11.62	14.59	7.49
Merged-chr3-65922650-2	chr3	65922128	65923128	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35621.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	9.15	2.3	1.85	1.35	2.8	1.61	3.17	8.4	2.5
Merged-chr11-75415242-2	chr11	75414694	75415694	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011340, intron 4 of 7)	intron (NM_011340, intron 4 of 7)	7429.0	NM_011340	20317.0	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.0	1.38	3.7	5.4	2.8	5.63	2.11	1.77	0.62
Merged-chr13-60744302-2	chr13	60743777	60744777	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	42087.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.15	8.29	1.85	7.42	4.67	3.22	6.34	3.1	2.5
Merged-chr4-3737125-2	chr4	3736631	3737631	+	721.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	22167.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	61.21	45.62	54.57	56.0	33.12	44.21	39.08	40.68	37.47
Merged-chr9-75437768-2	chr9	75437266	75438266	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-3758.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	13.73	10.14	8.32	15.52	9.8	10.45	34.85	22.55	12.49
Merged-chr5-146921425-2	chr5	146920933	146921933	+	721.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27224.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.58	3.23	2.77	2.7	2.8	1.61	2.11	1.77	0.0
Merged-chr13-42061059-3	chr13	42060560	42061560	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	9039.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	11.44	6.45	6.47	6.07	7.93	6.43	15.84	4.86	5.62
Merged-chr12-70119778-3	chr12	70119286	70120286	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7751.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.0	1.84	7.4	6.75	3.73	1.61	6.34	5.75	3.12
Merged-chr16-78452505-3	chr16	78452006	78453006	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75325.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	4.0	4.15	3.7	2.7	6.53	2.41	4.22	2.21	1.25
Merged-chr8-105121154-3	chr8	105120647	105121647	+	721.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10653.0	NM_146213	234677.0	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.57	0.92	10.17	3.37	3.27	1.61	2.11	4.42	2.5
Merged-chr6-8274615-2	chr6	8274106	8275106	+	721.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	ORR1D2|LTR|ERVL-MaLR	15318.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	7.44	2.3	0.0	2.7	7.93	1.61	3.17	3.98	5.0
Merged-chr9-16312196-3	chr9	16311754	16312754	+	721.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	65977.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	24.03	36.4	47.17	41.83	45.72	53.05	29.57	36.7	20.61
Merged-chr4-63151358-3	chr4	63150867	63151867	+	721.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007443, intron 3 of 9)	intron (NM_007443, intron 3 of 9)	2805.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	6.29	5.07	1.85	5.4	1.87	8.84	3.17	1.33	5.0
Merged-chr12-98320183-3	chr12	98319664	98320664	+	721.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51529.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	20.59	26.73	37.0	22.27	22.86	50.64	22.18	24.76	31.85
Merged-chr10-9675383-3	chr10	9674965	9675965	+	721.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177271)	promoter-TSS (NM_177271)	-257.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	4.0	2.76	1.85	0.67	1.4	6.43	6.34	0.88	5.0
Merged-chr5-135870718-3	chr5	135870208	135871208	+	721.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021403, intron 14 of 14)	URR1A|DNA|hAT-Charlie	-17211.0	NM_013560	15507.0	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	4.58	4.61	0.0	3.37	3.73	0.0	1.06	3.1	2.5
Merged-chr10-87858429-5	chr10	87858048	87859048	+	721.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010512)	promoter-TSS (NM_010512)	283.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	111.55	89.39	54.57	92.44	73.24	70.73	140.47	152.99	56.21
Merged-chr10-5600332-2	chr10	5599811	5600811	+	721.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026793, intron 1 of 1)	intron (NM_026793, intron 1 of 1)	6583.0	NM_026793	68632.0	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	2.86	1.84	0.92	3.37	0.47	0.0	1.06	0.44	1.25
Merged-chr9-120691763-2	chr9	120691263	120692263	+	721.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114432.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	4.58	0.0	9.25	2.02	1.4	8.04	4.22	0.0	2.5
Merged-chr10-122544445-3	chr10	122543943	122544943	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25448.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	6.86	5.53	1.85	2.02	1.4	0.0	8.45	9.73	3.75
Merged-chr8-70166855-3	chr8	70166350	70167350	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310055, exon 8 of 9)	exon (NM_001310055, exon 8 of 9)	-5558.0	NM_145597	234371.0	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	2.86	1.38	0.0	1.35	1.4	1.61	5.28	4.86	3.75
Merged-chr15-77874464-3	chr15	77873974	77874974	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32299.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	16.59	5.07	9.25	14.17	11.2	6.43	17.96	13.71	5.62
Merged-chr4-108578032-3	chr4	108577553	108578553	+	721.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172697, intron 1 of 9)	intron (NM_172697, intron 1 of 9)	1283.0	NM_172697	230596.0	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	58.35	50.23	53.65	56.0	23.33	18.49	50.7	54.39	26.85
Merged-chr3-81120891-2	chr3	81120380	81121380	+	721.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	84464.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	11.44	6.45	12.02	18.22	11.66	24.11	10.56	11.05	10.62
Merged-chr3-93362097-2	chr3	93361599	93362599	+	721.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31600.0	NM_009100	20129.0	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.57	3.23	3.7	2.7	1.4	4.82	5.28	1.33	0.0
Merged-chr16-49967257-2	chr16	49966767	49967767	+	721.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	11437.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	58.92	33.18	20.35	41.83	27.52	41.8	22.18	31.84	20.61
Merged-chr18-24227832-3	chr18	24227341	24228341	+	721.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361200, intron 1 of 12)	ORR1B1-int|LTR|ERVL-MaLR	21847.0	NM_001160404	14423.0	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.72	7.83	3.7	10.8	4.2	8.04	11.62	4.42	7.49
Merged-chr13-112466225-2	chr13	112465717	112466717	+	721.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010560, intron 1 of 16)	intron (NM_010560, intron 1 of 16)	2147.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	24.6	21.2	5.55	24.96	14.93	4.82	16.9	20.34	8.12
Merged-chr16-85134392-2	chr16	85133892	85134892	+	721.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	39315.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	83.52	82.94	78.62	62.75	78.84	114.14	80.27	95.07	79.32
Merged-chr1-40322754-3	chr1	40322256	40323256	+	721.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1833.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	18.88	26.26	16.65	29.69	27.06	14.47	16.9	15.03	21.86
Merged-chr4-133675892-3	chr4	133675380	133676380	+	721.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2714.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	53.77	47.46	49.02	52.63	37.32	61.89	36.97	57.04	65.58
Merged-chr6-83653670-3	chr6	83653187	83654187	+	721.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016751, intron 3 of 6)	MTEa|LTR|ERVL-MaLR	2429.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	91.53	110.59	104.52	119.43	128.29	120.57	159.48	119.83	62.45
Merged-chr1-152597606-1	chr1	152597106	152598106	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	27611.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	53.77	77.41	47.17	60.72	50.38	53.05	44.36	44.66	24.98
Merged-chr1-155476458-1	chr1	155475958	155476958	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50653.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	6.86	3.23	0.0	6.07	4.2	4.82	8.45	7.52	1.25
Merged-chr9-50540346-1	chr9	50539846	50540846	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359610, intron 6 of 10)	intron (NM_001359610, intron 6 of 10)	-11705.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	26.89	29.95	14.8	32.39	34.06	34.56	32.74	23.43	28.1
Merged-chr1-39504393-1	chr1	39503893	39504893	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-25638.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.58	10.6	11.1	13.49	11.66	12.06	5.28	3.98	5.62
Merged-chr15-25398056-1	chr15	25397556	25398556	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027395, intron 1 of 1)	intron (NM_027395, intron 1 of 1)	15708.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	12.01	4.61	1.85	5.4	7.93	0.0	6.34	6.19	8.74
Merged-chr5-96851687-1	chr5	96851187	96852187	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	58302.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	6.29	5.99	10.17	8.1	3.27	3.22	4.22	2.21	7.49
Merged-chr16-91852407-1	chr16	91851907	91852907	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 21 of 28)	intron (NM_001110275, intron 21 of 28)	79223.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	171.62	125.33	120.24	209.84	153.95	172.81	147.87	138.84	97.43
Merged-chrX-167164952-2	chrX	167164461	167165461	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44257.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	17.73	22.12	4.62	8.77	13.53	27.33	13.73	5.31	13.74
Merged-chr9-99390650-1	chr9	99390150	99391150	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008624, intron 4 of 5)	intron (NM_008624, intron 4 of 5)	-32120.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	6.29	10.14	16.65	9.45	12.13	10.45	11.62	5.75	7.49
Merged-chr7-115132589-1	chr7	115132089	115133089	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181315.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	2.86	1.38	1.85	8.1	5.6	9.65	1.06	4.42	3.75
Merged-chr10-127744785-1	chr10	127744285	127745285	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5247.0	NM_198035	320080.0	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	11.44	12.9	14.8	9.45	10.73	6.43	14.79	14.15	13.74
Merged-chr5-64093536-2	chr5	64093037	64094037	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025700, intron 1 of 13)	intron (NM_025700, intron 1 of 13)	598.0	NM_001356964	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	40.62	27.19	27.75	47.9	46.18	27.33	52.81	28.3	36.22
Merged-chr17-15467853-2	chr17	15467354	15468354	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30422.0	NM_011185	19170.0	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	2.86	4.15	0.0	2.02	1.87	11.25	0.0	3.54	5.62
Merged-chr14-69238400-2	chr14	69237876	69238876	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46727.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	3.43	0.92	2.77	1.35	3.27	1.61	0.0	0.88	1.25
Merged-chr19-11803617-1	chr19	11803117	11804117	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	15786.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	59.49	63.13	71.22	53.98	60.65	49.03	77.1	68.09	49.34
Merged-chr10-16995154-1	chr10	16994654	16995654	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	100628.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	16.59	17.97	12.95	8.1	11.2	16.88	16.9	14.59	11.24
Merged-chr18-66002150-1	chr18	66001650	66002650	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027400, intron 1 of 13)	intron (NM_027400, intron 1 of 13)	485.0	NM_027400	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	20.59	18.89	10.17	25.64	13.53	38.58	29.57	12.82	9.37
Merged-chr16-49500922-1	chr16	49500422	49501422	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198372.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	1.14	2.76	0.92	4.72	1.87	0.0	4.22	6.63	5.62
Merged-chr4-126310081-2	chr4	126309584	126310584	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199473, intron 3 of 3)	intron (NM_199473, intron 3 of 3)	11619.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	9.15	0.92	9.25	2.7	3.73	1.61	4.22	0.44	6.25
Merged-chr1-180604785-1	chr1	180604285	180605285	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17584.0	NR_105869	102466761.0		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	3.43	3.69	5.55	6.07	6.06	3.22	7.39	8.4	5.62
Merged-chr3-79910939-2	chr3	79910429	79911429	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133187, intron 2 of 3)	MIR|SINE|MIR	24999.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.43	2.76	3.7	3.37	2.33	14.47	4.22	3.1	5.0
Merged-chr1-170565083-1	chr1	170564583	170565583	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 1 of 9)	G-rich|Low_complexity|Low_complexity	-7973.0	NR_154593	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.14	3.23	5.55	4.72	8.4	6.43	3.17	3.54	3.75
Merged-chr8-105290242-1	chr8	105289742	105290742	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166394)	promoter-TSS (NM_001166394)	-714.0	NM_028888	74356.0	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	20.59	9.22	23.12	10.12	10.26	17.68	15.84	15.03	17.49
Merged-chr1-58723372-1	chr1	58722872	58723872	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355056, intron 1 of 8)	ID_B1|SINE|B4	-7180.0	NM_001293805	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	266.0	284.76	208.11	335.33	258.45	199.34	242.92	324.11	141.77
Merged-chr19-55265456-1	chr19	55264956	55265956	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	12087.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	2.86	8.29	4.62	2.02	2.33	3.22	4.22	2.65	5.62
Merged-chr1-58586659-1	chr1	58586159	58587159	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172513)	promoter-TSS (NM_172513)	262.0	NM_025597	66495.0	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	57.21	58.98	66.6	70.17	64.38	61.89	103.51	90.64	46.84
Merged-chr12-26451377-1	chr12	26450877	26451877	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021384, intron 2 of 5)	intron (NM_021384, intron 2 of 5)	5075.0	NM_021384	58185.0	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	11.44	12.44	10.17	13.49	11.2	23.31	19.01	20.78	7.49
Merged-chr16-87507871-1	chr16	87507371	87508371	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11798.0	NR_040375	414095.0	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0.57	2.76	0.0	2.7	4.2	1.61	4.22	1.33	1.25
Merged-chr5-117115176-1	chr5	117114676	117115676	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122666, intron 1 of 12)	intron (NM_001122666, intron 1 of 12)	817.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	69.22	80.18	109.14	70.85	61.58	107.71	100.34	77.82	70.57
Merged-chr11-70018445-1	chr11	70017945	70018945	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001109752)	promoter-TSS (NM_001109752)	-160.0	NM_001109752	13385.0	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs large MAGUK scaffold protein 4	protein-coding	27.46	19.35	12.02	23.62	23.79	33.76	39.08	18.57	28.1
Merged-chr12-5223619-2	chr12	5223146	5224146	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	152036.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.58	2.3	7.4	2.02	6.53	10.45	9.51	7.52	5.0
Merged-chr19-42744378-1	chr19	42743878	42744878	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029011, intron 4 of 15)	intron (NM_029011, intron 4 of 15)	8397.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	5.15	2.3	2.77	2.02	1.87	8.04	5.28	4.86	3.75
Merged-chrX-139986843-1	chrX	139986343	139987343	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153586, intron 4 of 6)	L1M4|LINE|L1	11752.0	NM_153586	237073.0	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding	15.45	21.2	25.9	12.14	13.06	9.65	19.01	13.27	5.62
Merged-chr3-154305592-3	chr3	154305108	154306108	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010713)	TTS (NM_010713)	24952.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	4.0	4.61	4.62	9.45	8.4	8.04	17.96	6.63	1.25
Merged-chr5-135191848-3	chr5	135191351	135192351	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011714, intron 1 of 18)	B3|SINE|B2	4528.0	NM_011714	22385.0	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	9.15	12.44	9.25	11.47	11.66	18.49	15.84	5.31	3.75
Merged-chr11-3178439-2	chr11	3177943	3178943	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030207, intron 5 of 32)	B2_Mm2|SINE|B2	15020.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	30.32	51.61	65.67	40.48	74.17	96.45	0.0	0.88	93.68
Merged-chrX-56836055-1	chrX	56835555	56836555	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13730.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	25.17	7.83	14.8	14.84	11.66	9.65	8.45	14.15	16.24
Merged-chr1-88611023-1	chr1	88610523	88611523	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	59506.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	69.22	82.48	48.1	2.7	3.27	3.22	1.06	0.44	4.37
Merged-chr17-81679835-1	chr17	81679335	81680335	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	ORR1D2|LTR|ERVL-MaLR	58552.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.43	5.53	5.55	9.45	4.67	6.43	11.62	5.75	9.99
Merged-chr13-107955932-1	chr13	107955432	107956432	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65868.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	14.3	5.07	5.55	13.49	3.73	8.04	12.67	8.84	16.24
Merged-chr5-16293407-1	chr5	16292907	16293907	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 10 of 38)	intron (NM_001110843, intron 10 of 38)	-260088.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.43	4.15	0.0	4.05	1.87	0.0	3.17	0.44	1.25
Merged-chr3-9709085-1	chr3	9708585	9709585	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-99000.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	3.43	1.84	0.0	6.07	0.93	2.41	4.22	3.54	2.5
Merged-chr13-33005868-2	chr13	33005351	33006351	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009256, intron 1 of 6)	intron (NM_009256, intron 1 of 6)	1310.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	14.87	12.44	25.9	7.42	7.93	6.43	22.18	13.71	9.99
Merged-chr17-32403630-1	chr17	32403130	32404130	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347343)	promoter-TSS (NM_001347343)	-48.0	NR_153797	320484.0	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	10.87	8.29	17.57	8.1	11.2	6.43	13.73	8.4	6.87
Merged-chr1-192101552-2	chr1	192101042	192102042	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290279, exon 10 of 10)	3' UTR (NM_001290279, exon 10 of 10)	-8943.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	17.73	11.98	5.55	12.14	7.93	4.82	3.17	9.29	6.87
Merged-chr10-11350376-1	chr10	11349876	11350876	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010146, intron 1 of 3)	intron (NM_010146, intron 1 of 3)	6931.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	1.14	1.38	7.4	6.75	3.73	8.04	1.06	0.44	1.25
Merged-chr5-114699903-1	chr5	114699403	114700403	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	IAPLTR2a2_Mm|LTR|ERVK	-7876.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	222.53	140.08	124.87	199.04	139.49	135.84	278.83	262.65	163.0
Merged-chr5-122763653-1	chr5	122763153	122764153	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199676, intron 2 of 16)	intron (NM_001199676, intron 2 of 16)	15757.0	NM_001199676	207565.0	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	12.59	9.68	5.55	26.31	11.2	12.06	5.28	0.44	1.25
Merged-chr15-59146262-2	chr15	59145758	59146758	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64232.0	NM_144800	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	24.6	15.21	9.25	46.56	34.06	43.4	33.8	26.53	14.36
Merged-chr14-51052468-1	chr14	51051968	51052968	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2305.0	NM_001011877	497113.0	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	37.18	34.1	38.85	32.39	29.39	46.62	15.84	17.69	8.74
Merged-chr17-24470849-1	chr17	24470349	24471349	+	721.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025954, exon 1 of 2)	exon (NM_025954, exon 1 of 2)	376.0	NM_025954	67078.0	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	103.54	58.06	75.85	94.46	80.24	70.73	88.72	43.77	51.84
Merged-chr10-121463646-2	chr10	121463119	121464119	+	721.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RMER19B|LTR|ERVK	12631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	30.32	28.11	19.42	27.66	11.66	34.56	45.42	41.56	32.48
Merged-chr12-8520851-2	chr12	8520340	8521340	+	721.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18726.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	218.52	286.61	226.61	229.4	277.11	269.27	304.18	389.99	179.86
Merged-chr18-74962287-3	chr18	74961717	74962717	+	720.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010720)	promoter-TSS (NM_010720)	-954.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	5.72	5.53	5.55	4.05	5.6	4.82	7.39	2.65	0.0
Merged-chr4-11550309-3	chr4	11549814	11550814	+	720.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347055, exon 24 of 24)	3' UTR (NM_001347055, exon 24 of 24)	-8606.0	NM_001039556	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	1.72	4.61	1.85	2.02	3.27	3.22	4.22	3.1	5.62
Merged-chr4-149954293-2	chr4	149953785	149954785	+	720.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029035, intron 1 of 2)	CpG	721.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	18.88	5.99	9.25	22.94	12.13	10.45	25.35	15.03	6.87
Merged-chr6-49269404-3	chr6	49268901	49269901	+	720.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5349.0	NM_001362188	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	2.29	0.92	5.55	3.37	2.33	1.61	2.11	2.65	0.0
Merged-chr1-78536943-3	chr1	78536451	78537451	+	720.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026713, intron 6 of 6)	intron (NM_026713, intron 6 of 6)	25891.0	NM_026713	68393.0	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	24.03	27.65	3.7	38.46	53.18	20.09	22.18	14.15	11.87
Merged-chr19-5038297-3	chr19	5037768	5038768	+	720.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175383)	promoter-TSS (NM_175383)	-558.0	NM_175383	108902.0	Mm.29628	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	22.31	13.82	11.1	21.59	10.26	8.04	20.07	12.38	4.37
Merged-chr1-36566574-2	chr1	36566019	36567019	+	720.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-8138.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	4.0	3.23	8.32	8.1	2.8	16.08	13.73	2.21	6.25
Merged-chr4-101159616-2	chr4	101159115	101160115	+	720.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146145, intron 17 of 24)	intron (NM_146145, intron 17 of 24)	90577.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	17.73	21.66	27.75	22.94	19.59	20.09	22.18	3.98	6.25
Merged-chr4-133730393-2	chr4	133729880	133730880	+	720.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	-13272.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	55.49	37.32	34.22	33.74	27.06	19.29	25.35	16.8	13.74
Merged-chr3-146093496-2	chr3	146093002	146094002	+	720.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 6 of 22)	intron (NM_172864, intron 6 of 22)	14534.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	5.15	4.15	9.25	6.07	3.27	4.82	1.06	2.65	3.75
Merged-chr4-42933851-2	chr4	42933348	42934348	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001346526, exon 3 of 9)	exon (NM_001346526, exon 3 of 9)	-16019.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	2.86	3.69	5.55	4.05	2.8	1.61	3.17	0.44	8.74
Merged-chr18-46962858-2	chr18	46962373	46963373	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178377, intron 2 of 6)	intron (NM_178377, intron 2 of 6)	3997.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	24.6	30.87	34.22	49.25	55.98	58.68	36.97	31.39	41.84
Merged-chr7-24610725-2	chr7	24610253	24611253	+	720.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001102613)	promoter-TSS (NM_001102613)	-575.0	NM_001102613	232970.0	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	12.01	14.75	13.87	10.12	5.6	25.72	21.12	11.94	10.62
Merged-chr9-45102338-2	chr9	45101844	45102844	+	720.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 8 of 10)	intron (NM_001005421, intron 8 of 10)	-15532.0	NM_001014761	72821.0	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	36.61	23.96	12.02	31.71	26.59	33.76	6.34	1.77	0.0
Merged-chr15-99497265-3	chr15	99496765	99497765	+	720.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028224, exon 12 of 12)	3' UTR (NM_028224, exon 12 of 12)	-22535.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	21.17	9.68	8.32	13.49	6.53	22.51	13.73	10.61	9.37
Merged-chr17-84106587-2	chr17	84106054	84107054	+	720.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2D|LTR|ERVL	27894.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	82.95	95.84	31.45	118.08	96.57	73.95	70.76	86.22	55.58
Merged-chr13-81147991-3	chr13	81147497	81148497	+	720.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	183923.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	12.59	7.37	5.55	5.4	6.53	6.43	6.34	6.63	5.62
Merged-chr17-68223412-3	chr17	68222949	68223949	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50348.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	16.59	9.22	11.1	10.12	5.6	20.9	17.96	8.4	16.24
Merged-chr10-88327631-2	chr10	88327140	88328140	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027878, intron 5 of 6)	intron (NM_027878, intron 5 of 6)	29435.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	4.0	1.84	3.7	6.07	1.87	1.61	2.11	7.52	1.25
Merged-chr19-34474894-2	chr19	34474471	34475471	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009890, exon 1 of 1)	exon (NM_009890, exon 1 of 1)	164.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	8.58	3.69	1.85	12.82	7.46	4.82	7.39	3.54	5.62
Merged-chr7-75880888-2	chr7	75880388	75881388	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32550.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.86	3.23	0.0	4.72	3.27	4.82	3.17	0.0	5.0
Merged-chr3-54601776-2	chr3	54601280	54602280	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91035.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	37.18	30.87	16.65	0.67	1.4	0.0	22.18	15.03	10.62
Merged-chr4-9671354-2	chr4	9670811	9671811	+	720.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1967.0	NM_001290367	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	18.31	25.8	16.65	16.19	11.2	21.7	43.3	21.67	26.85
Merged-chr5-143466118-2	chr5	143465589	143466589	+	720.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 1 of 14)	intron (NM_144915, intron 1 of 14)	1596.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	74.37	70.96	34.22	99.18	59.25	48.23	76.05	76.49	33.1
Merged-chr1-91168160-1	chr1	91167660	91168660	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033408, intron 13 of 15)	intron (NM_001033408, intron 13 of 15)	-11662.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	3.43	3.23	5.55	8.1	7.93	0.0	4.22	1.77	0.62
Merged-chr16-5255208-1	chr16	5254708	5255708	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027446, intron 1 of 7)	intron (NM_027446, intron 1 of 7)	748.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	83.52	123.95	100.82	129.55	140.42	98.06	122.52	148.57	62.45
Merged-chr9-84466941-1	chr9	84466441	84467441	+	720.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-307457.0	NR_040739	75253.0	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	4.0	1.38	0.0	2.02	1.4	3.22	1.06	1.77	0.0
Merged-chr8-40852107-1	chr8	40851607	40852607	+	720.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-10260.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.86	1.38	0.0	2.7	2.33	5.63	21.12	15.03	4.37
Merged-chr13-110626551-1	chr13	110626051	110627051	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231507.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	1.72	3.69	6.47	8.1	4.67	4.02	1.06	0.44	3.75
Merged-chr7-46957983-1	chr7	46957483	46958483	+	720.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040695, intron 1 of 11)	intron (NM_001040695, intron 1 of 11)	535.0	NM_001040695	54122.0	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	36.04	22.12	29.6	36.43	41.52	39.39	49.64	46.87	16.86
Merged-chr17-27051744-3	chr17	27051222	27052222	+	720.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5582.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	52.63	40.09	54.57	42.51	52.25	45.82	24.29	16.8	12.49
Merged-chr13-97203828-3	chr13	97203335	97204335	+	720.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5478.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	40.04	44.7	45.32	11.47	14.46	29.74	17.96	23.43	18.74
Merged-chr4-114997226-2	chr4	114996720	114997720	+	720.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2898.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	4.0	6.91	6.47	8.1	7.46	0.8	8.45	3.54	5.62
Merged-chr5-66079948-3	chr5	66079440	66080440	+	720.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	18239.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	42.33	41.93	30.52	56.0	38.25	23.31	48.58	45.99	25.61
Merged-chr1-152291042-1	chr1	152290542	152291542	+	720.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95640.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	5.72	3.23	1.85	0.67	5.6	8.04	4.22	0.44	5.62
Merged-chr14-106687579-1	chr14	106687079	106688079	+	720.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-201059.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	8.58	4.61	1.85	4.05	6.53	4.02	6.34	1.33	8.12
Merged-chr16-31883795-2	chr16	31883288	31884288	+	720.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013900, exon 4 of 16)	exon (NM_013900, exon 4 of 16)	4978.0	NM_013900	30060.0	Mm.30988	NM_013900	ENSMUSG00000022780	Meltf	CD228|MTf|Mfi2	melanotransferrin	protein-coding	6.86	1.38	1.85	4.72	0.47	0.0	3.17	2.65	1.25
Merged-chr18-4948174-3	chr18	4947662	4948662	+	720.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-98427.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	10.87	11.98	23.12	13.49	11.66	24.92	21.12	12.82	12.49
Merged-chr18-49990449-2	chr18	49989962	49990962	+	720.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177759, intron 1 of 1)	intron (NM_001177759, intron 1 of 1)	11035.0	NM_001177759	106869.0	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	14.3	8.29	4.62	8.1	2.8	6.43	5.28	3.1	6.25
Merged-chr17-25941862-3	chr17	25941344	25942344	+	720.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001039038)	TTS (NM_001039038)	145.0	NM_001357592	14755.0	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	29.75	29.95	25.9	48.58	43.39	45.01	52.81	40.68	35.6
Merged-chr4-154961535-3	chr4	154961011	154962011	+	720.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010419, exon 3 of 3)	exon (NM_010419, exon 3 of 3)	588.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	2.86	1.38	0.0	3.37	3.27	2.41	7.39	1.77	8.12
Merged-chr8-23109412-2	chr8	23108912	23109912	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102385, intron 21 of 45)	intron (NR_102385, intron 21 of 45)	-29618.0	NM_001310436	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	4.58	4.15	0.0	3.37	1.4	1.61	1.06	3.1	3.12
Merged-chr13-24638704-1	chr13	24638204	24639204	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029679)	promoter-TSS (NM_029679)	56.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	6.86	2.3	3.7	6.75	2.8	3.22	3.17	1.77	2.5
Merged-chr15-99469237-3	chr15	99468742	99469742	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029236)	TTS (NM_029236)	5488.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	6.29	3.23	7.4	10.8	6.06	3.22	9.51	1.77	6.25
Merged-chr2-121294233-1	chr2	121293733	121294733	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032393, intron 2 of 6)	intron (NM_032393, intron 2 of 6)	-1221.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	4.0	2.76	0.0	1.35	1.87	6.43	2.11	2.65	0.0
Merged-chr7-82867761-3	chr7	82867291	82868291	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175366, exon 1 of 2)	exon (NM_175366, exon 1 of 2)	458.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	12.01	5.07	22.2	9.45	5.6	8.04	38.02	23.88	25.61
Merged-chr12-100166397-3	chr12	100165910	100166910	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-6757.0	NM_183155	217827.0	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	5.72	6.45	1.85	3.37	6.06	16.88	6.34	4.86	12.49
Merged-chr10-87854583-2	chr10	87854061	87855061	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3704.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	36.04	15.21	24.05	46.56	22.39	40.99	26.4	20.34	13.74
Merged-chr9-50670884-1	chr9	50670384	50671384	+	720.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178118, intron 17 of 19)	B3|SINE|B2	-11104.0	NM_145614	235339.0	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	2.29	3.69	0.0	1.35	1.4	0.0	5.28	1.77	2.5
Merged-chr9-116058638-3	chr9	116058141	116059141	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	116722.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	35.47	55.29	54.57	62.07	66.24	63.5	70.76	66.33	45.59
Merged-chr5-33033416-3	chr5	33032950	33033950	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14634.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	6.29	3.23	3.7	4.72	2.33	8.04	2.11	0.88	6.25
Merged-chr5-136186920-2	chr5	136186420	136187420	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025774, intron 5 of 5)	intron (NM_025774, intron 5 of 5)	12034.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.72	5.53	3.7	9.45	2.8	11.25	4.22	2.65	0.62
Merged-chr10-43001309-1	chr10	43000809	43001809	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10147.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	6.29	3.23	3.7	6.75	0.93	1.61	5.28	1.77	0.0
Merged-chr18-80932737-3	chr18	80932233	80933233	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 1 of 28)	MIR|SINE|MIR	1325.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	17.73	12.9	4.62	12.82	6.06	11.25	14.79	5.31	7.49
Merged-chr1-53873869-2	chr1	53873369	53874369	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	24445.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	17.73	17.51	23.12	14.17	9.8	35.37	13.73	9.29	9.37
Merged-chr4-137072787-2	chr4	137072295	137073295	+	720.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24100.0	NM_198248	230848.0	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	5.15	1.84	0.0	4.72	0.0	0.0	3.17	1.33	4.37
Merged-chr8-43367882-2	chr8	43367366	43368366	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60857.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.57	0.92	0.0	5.4	1.87	1.61	12.67	7.07	8.74
Merged-chr8-31237439-1	chr8	31236939	31237939	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001286424, exon 4 of 4)	3' UTR (NM_001286424, exon 4 of 4)	50108.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	4.58	4.15	1.85	4.72	2.33	1.61	3.17	0.0	1.25
Merged-chrX-36113290-2	chrX	36112782	36113782	+	720.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	L2b|LINE|L2	1174.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	47.48	72.8	50.87	37.11	32.19	44.21	70.76	63.67	47.46
Merged-chr17-83631993-3	chr17	83631489	83632489	+	720.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153512)	promoter-TSS (NM_153512)	-94.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	10.87	2.3	1.85	10.12	3.73	1.61	9.51	1.33	7.49
Merged-chr7-125472112-3	chr7	125471631	125472631	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026330, exon 3 of 8)	exon (NM_026330, exon 3 of 8)	19411.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	17.16	25.34	28.67	18.89	26.59	33.76	40.14	26.53	30.6
Merged-chr13-20311768-3	chr13	20311235	20312235	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-161255.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	13.73	11.52	5.55	4.05	3.73	4.82	11.62	10.17	1.87
Merged-chr1-172143767-3	chr1	172143274	172144274	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4241.0	NR_151641	98193.0	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	2.29	3.23	0.0	3.37	4.67	3.22	2.11	3.54	1.25
Merged-chr9-121348218-3	chr9	121347713	121348713	+	720.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-18745.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	36.04	35.02	21.27	39.13	26.12	40.19	25.35	18.13	9.99
Merged-chr13-45416838-2	chr13	45416343	45417343	+	720.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27101.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	16.02	15.21	12.95	16.19	12.6	13.66	12.67	10.17	8.74
Merged-chr4-102577648-4	chr4	102577198	102578198	+	720.395813	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	7638.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	31.46	44.24	33.3	30.36	20.06	29.74	38.02	29.63	41.84
Merged-chr2-140783141-3	chr2	140782641	140783641	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	MLT1H|LTR|ERVL-MaLR	-111665.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	8.58	6.91	16.65	8.1	7.46	9.65	8.45	2.65	6.25
Merged-chr11-121704452-3	chr11	121703921	121704921	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1994.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	156.74	155.75	69.37	176.78	126.89	110.12	154.2	160.51	93.05
Merged-chr13-100490670-3	chr13	100490185	100491185	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360706, intron 1 of 16)	intron (NM_001360706, intron 1 of 16)	1709.0	NR_153794	23894.0	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	10.3	10.14	14.8	4.72	4.67	0.0	6.34	10.17	9.37
Merged-chr4-135067312-3	chr4	135066809	135067809	+	720.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53336.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	7.44	1.38	9.25	4.72	1.87	8.04	6.34	5.31	3.12
Merged-chr8-76900539-4	chr8	76900016	76901016	+	720.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028579, exon 1 of 2)	non-coding (NR_028579, exon 1 of 2)	105.0	NR_028579	102640923.0	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	-	predicted gene 10649	ncRNA	22.31	33.18	5.55	37.78	43.85	19.29	43.3	21.67	13.12
Merged-chr7-29523816-2	chr7	29523302	29524302	+	720.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18342.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	1.72	2.3	1.85	5.4	4.67	4.82	3.17	1.77	5.0
Merged-chr11-49101686-3	chr11	49101194	49102194	+	720.366638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12063.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	9.15	11.06	24.97	15.52	14.93	15.27	12.67	12.38	6.25
Merged-chr11-63130711-2	chr11	63130195	63131195	+	720.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008885)	promoter-TSS (NM_008885)	-762.0	NM_008885	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	18.31	17.05	20.35	40.48	28.46	76.36	68.65	65.44	53.08
Merged-chr13-88765872-2	chr13	88765373	88766373	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-55599.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	6.29	6.45	9.25	1.35	1.4	0.8	7.39	6.63	6.87
Merged-chr7-100487528-2	chr7	100487038	100488038	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5820.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	12.59	7.83	19.42	19.57	9.8	17.68	10.56	8.4	18.74
Merged-chr5-29786350-2	chr5	29785852	29786852	+	720.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001037940, exon 10 of 10)	3' UTR (NM_001037940, exon 10 of 10)	-50416.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	29.17	18.89	11.1	36.43	25.19	20.09	14.79	13.27	11.24
Merged-chr17-36824234-2	chr17	36823719	36824719	+	720.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	12044.0	NM_201611	399549.0	Mm.329034	NM_201611	ENSMUSG00000037130	H2-M10.6	-	histocompatibility 2, M region locus 10.6	protein-coding	10.87	2.3	0.0	3.37	3.73	1.61	3.17	3.1	8.74
Merged-chr14-65332121-3	chr14	65331630	65332630	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26546.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	13.73	9.22	9.25	20.24	10.26	14.47	19.01	6.63	10.62
Merged-chr13-4934822-3	chr13	4934327	4935327	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-325663.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	11.44	4.15	1.85	7.42	7.46	8.04	6.34	8.84	2.5
Merged-chr6-124311713-1	chr6	124311213	124312213	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 5 of 16)	intron (NM_001170395, intron 5 of 16)	7062.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	22.31	17.05	24.97	19.57	16.33	29.74	21.12	11.05	16.24
Merged-chr7-24856696-1	chr7	24856196	24857196	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12995.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	3.43	3.69	9.25	2.7	5.6	14.47	1.06	6.19	2.5
Merged-chr1-144775480-1	chr1	144774980	144775980	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022881)	promoter-TSS (NM_022881)	-53.0	NM_022881	64214.0	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	1.72	1.84	1.85	4.05	5.6	3.22	3.17	5.31	2.5
Merged-chr8-80961422-3	chr8	80960912	80961912	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	53494.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	16.59	14.28	11.1	22.27	15.86	32.15	14.79	5.75	13.12
Merged-chr2-118905904-1	chr2	118905404	118906404	+	720.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	intron (NM_001045523, intron 1 of 6)	4289.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	5.15	2.3	5.55	2.7	6.06	8.84	7.39	6.63	8.74
Merged-chr5-36560729-1	chr5	36560229	36561229	+	720.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	21668.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.86	7.83	8.32	9.45	7.93	6.43	87.66	64.11	46.84
Merged-chr4-3650560-1	chr4	3650060	3651060	+	720.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5946.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	27.46	35.94	24.05	33.74	30.32	35.37	28.52	24.32	18.11
Merged-chr15-84190084-3	chr15	84189592	84190592	+	720.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_054088)	TTS (NM_054088)	-2141.0	NM_178614	68653.0	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	9.15	9.68	30.52	18.22	9.8	23.31	26.4	11.5	24.36
Merged-chr17-6008012-5	chr17	6007529	6008529	+	720.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001113351, exon 7 of 25)	exon (NM_001113351, exon 7 of 25)	449.0	NM_001290698	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	28.03	28.11	14.8	47.9	26.12	20.09	29.57	15.92	10.62
Merged-chr2-33986587-3	chr2	33986089	33987089	+	720.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-98643.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	2.86	2.3	1.85	2.02	0.47	0.0	3.17	1.33	3.75
Merged-chr7-133050845-2	chr7	133050323	133051323	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009980, intron 2 of 10)	intron (NM_009980, intron 2 of 10)	31037.0	NM_001347623	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	18.31	27.65	18.5	18.22	21.46	35.37	24.29	21.67	16.24
Merged-chr8-108731057-3	chr8	108730598	108731598	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	16454.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	26.89	24.42	35.15	25.64	10.73	32.96	12.67	8.4	13.74
Merged-chr15-8665445-3	chr15	8664942	8665942	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	T-rich|Low_complexity|Low_complexity	45365.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	10.87	13.82	11.1	9.45	3.73	4.02	16.9	16.8	3.75
Merged-chr15-81594413-2	chr15	81593921	81594921	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177821, intron 1 of 30)	intron (NM_177821, intron 1 of 30)	8207.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	28.6	26.26	29.6	20.24	17.73	36.97	28.52	23.43	15.61
Merged-chr9-123932560-2	chr9	123932070	123933070	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	36122.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	116.13	95.38	118.39	101.21	65.78	105.3	78.16	72.07	69.32
Merged-chr4-125090002-1	chr4	125089502	125090502	+	720.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151472, intron 3 of 7)	intron (NR_151472, intron 3 of 7)	4868.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	7.44	16.13	3.7	16.19	11.66	14.47	7.39	7.96	11.24
Merged-chr9-86592203-2	chr9	86591734	86592734	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008615, intron 12 of 13)	intron (NM_008615, intron 12 of 13)	20181.0	NM_027100	69519.0	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	14.3	20.27	5.55	26.99	19.13	18.49	6.34	5.75	8.74
Merged-chr2-160176300-3	chr2	160175871	160176871	+	720.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151123.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	18.31	10.6	14.8	22.27	15.86	36.17	19.01	15.92	31.23
Merged-chr4-59546908-3	chr4	59546414	59547414	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	2450.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	43.48	71.42	30.52	52.63	59.25	63.5	74.99	80.03	56.21
Merged-chr9-3018778-3	chr9	3018327	3019327	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	19916.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	6.29	32.72	16.65	11.47	47.58	6.43	20.07	21.67	13.12
Merged-chr15-27974774-3	chr15	27974262	27975262	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	51086.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	16.59	14.75	14.8	16.87	6.06	1.61	19.01	14.59	3.12
Merged-chr4-40774522-3	chr4	40774010	40775010	+	720.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16625.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	19.45	13.82	7.4	16.19	8.86	20.9	26.4	15.03	9.99
Merged-chr11-107011848-2	chr11	107011350	107012350	+	720.208374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-12325.0	NM_010655	16647.0	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	234.54	206.43	135.04	215.23	162.34	187.28	153.15	214.45	111.79
Merged-chr19-41071699-3	chr19	41071208	41072208	+	720.1777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153520, intron 2 of 5)	intron (NM_153520, intron 2 of 5)	5405.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	3.43	0.0	0.92	2.02	1.4	0.0	1.06	0.0	2.5
Merged-chr6-99670985-3	chr6	99670500	99671500	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4229.0	NM_025829	66892.0	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.29	5.99	3.7	5.4	5.13	9.65	3.17	0.44	7.49
Merged-chr9-92207549-3	chr9	92207039	92208039	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195693, intron 5 of 6)	intron (NM_001195693, intron 5 of 6)	14603.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	5.72	11.52	3.7	4.72	7.93	0.0	5.28	5.31	1.25
Merged-chr15-62011928-3	chr15	62011434	62012434	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-26052.0	NR_132747	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.44	7.83	9.25	6.75	5.6	9.65	2.11	10.61	3.12
Merged-chr5-134933022-3	chr5	134932389	134933389	+	720.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359536, intron 2 of 5)	intron (NM_001359536, intron 2 of 5)	365.0	NM_001359537	79565.0	Mm.34235	NM_024479	ENSMUSG00000040557	Mettl27	AW492986|BC002286|Wbscr27	methyltransferase like 27	protein-coding	26.31	18.89	25.9	43.86	27.52	28.13	32.74	15.92	19.98
Merged-chr9-9682532-2	chr9	9682062	9683062	+	720.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 17 of 20)	B4A|SINE|B4	-211869.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	4.0	1.84	1.85	2.7	3.73	1.61	2.11	2.65	3.75
Merged-chr14-122191168-2	chr14	122190680	122191680	+	720.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	9486.0	NM_029556	69634.0	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	4.0	2.76	5.55	2.7	2.33	2.41	2.11	0.44	3.12
Merged-chr10-81241080-2	chr10	81240549	81241549	+	720.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034895, intron 4 of 17)	intron (NM_001034895, intron 4 of 17)	7886.0	NM_001034895	103406.0	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	2.29	1.38	0.0	6.07	0.0	3.22	1.06	0.44	2.5
Merged-chr11-68555482-2	chr11	68554986	68555986	+	720.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146004)	promoter-TSS (NM_146004)	-700.0	NM_146004	215723.0	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	5.72	3.23	1.85	2.02	4.2	4.82	6.34	2.21	2.5
Merged-chr5-142899382-2	chr5	142899002	142900002	+	720.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-4264.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	18.31	10.6	27.75	14.84	10.26	21.7	8.45	9.29	21.86
Merged-chr5-23887288-2	chr5	23886786	23887786	+	720.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19|LTR|ERVK	35053.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	9.72	11.06	2.77	14.17	22.86	28.13	20.07	10.17	2.5
Merged-chr2-5436168-3	chr2	5435657	5436657	+	720.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	56767.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	7.44	5.99	0.92	8.77	9.33	14.47	3.17	3.54	6.87
Merged-chr17-25984766-3	chr17	25984270	25985270	+	720.105591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347334, intron 1 of 11)	intron (NM_001347334, intron 1 of 11)	1026.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	72.65	73.73	52.72	55.33	58.78	87.61	99.28	103.47	44.34
Merged-chr11-18876189-3	chr11	18875800	18876800	+	720.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	142669.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.86	4.61	5.55	0.0	0.93	4.82	3.17	1.33	3.75
Merged-chr11-106491609-3	chr11	106491112	106492112	+	720.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3816.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	10.3	6.45	5.55	6.75	3.27	0.8	6.34	4.86	3.12
Merged-chr13-96543563-1	chr13	96543063	96544063	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012048)	promoter-TSS (NM_012048)	828.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	81.23	66.35	45.32	97.83	74.64	71.54	90.83	68.98	48.09
Merged-chr8-124704600-1	chr8	124704100	124705100	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357357, intron 4 of 19)	intron (NM_001357357, intron 4 of 19)	17394.0	NM_001357357	234875.0	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	10.87	1.38	0.0	5.4	2.8	1.61	43.3	53.5	18.11
Merged-chr6-38861033-1	chr6	38860533	38861533	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	(GGA)n|Simple_repeat|Simple_repeat	15157.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	6.29	11.52	18.5	15.52	6.06	9.65	16.9	4.42	7.49
Merged-chr7-88285150-1	chr7	88284650	88285650	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009982, intron 2 of 6)	intron (NM_009982, intron 2 of 6)	7065.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	54.92	47.0	27.75	61.4	34.52	38.58	68.65	81.8	42.47
Merged-chr7-80995892-3	chr7	80995366	80996366	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178707, intron 1 of 9)	L2c|LINE|L2	2182.0	NM_178707	233410.0	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	A730014M16Rik|Znf592	zinc finger protein 592	protein-coding	35.47	41.93	38.85	33.74	34.99	44.21	64.43	51.73	31.23
Merged-chr5-21139684-1	chr5	21139184	21140184	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36595.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.43	3.69	2.77	5.4	7.46	8.84	7.39	3.54	6.87
Merged-chr10-62865579-1	chr10	62865079	62866079	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21745.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	3.43	0.0	1.85	5.4	3.73	2.41	2.11	2.21	1.25
Merged-chr3-32427836-1	chr3	32427336	32428336	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-8315.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	8.01	6.91	4.62	10.12	9.8	12.86	5.28	7.07	8.12
Merged-chr6-114660116-1	chr6	114659616	114660616	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	17019.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	10.87	7.37	14.8	14.17	6.53	20.9	11.62	6.19	5.62
Merged-chr19-10881008-2	chr19	10880415	10881415	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134142, intron 1 of 3)	intron (NM_134142, intron 1 of 3)	828.0	NM_134142	68539.0	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	46.34	32.72	42.55	41.16	27.52	33.76	34.85	30.51	18.74
Merged-chr18-39854045-1	chr18	39853545	39854545	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80548.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.58	6.45	7.4	6.75	2.33	13.66	9.51	5.31	11.24
Merged-chr15-26016520-2	chr15	26016021	26017021	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32155.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	5.72	2.76	5.55	6.07	5.6	1.61	2.11	4.86	3.75
Merged-chr2-79193996-1	chr2	79193496	79194496	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61430.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	6.86	4.61	5.55	5.4	4.67	4.82	6.34	3.1	7.49
Merged-chr16-70355086-1	chr16	70354586	70355586	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	Lx8|LINE|L1	41137.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	6.86	7.83	7.4	8.77	4.2	3.22	3.17	0.44	1.25
Merged-chr5-117182648-1	chr5	117182148	117183148	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	L1MB7|LINE|L1	49060.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	62.35	62.67	63.82	53.3	78.84	88.42	48.58	53.06	31.85
Merged-chr8-103580363-1	chr8	103579863	103580863	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-23436.0	NR_045730	71058.0	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	1.14	0.46	1.85	2.7	2.8	0.0	3.17	0.44	5.62
Merged-chr10-121475345-2	chr10	121474840	121475840	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	910.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	183.06	228.55	172.97	199.72	212.26	214.61	192.23	241.87	131.78
Merged-chr2-91453424-2	chr2	91452916	91453916	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4115.0	NM_172668	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	12.01	9.22	3.7	6.07	6.53	8.04	2.11	5.31	5.0
Merged-chr4-133701227-2	chr4	133700718	133701718	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	15890.0	NR_106086	102465707.0		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	20.59	12.44	18.5	29.01	16.79	9.65	16.9	22.11	8.74
Merged-chr17-3157884-1	chr17	3157384	3158384	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	intron (NM_134123, intron 3 of 19)	42912.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	13.73	9.22	10.17	10.12	7.0	30.54	6.34	5.75	13.12
Merged-chr2-132509438-1	chr2	132508938	132509938	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028286, intron 1 of 3)	intron (NR_028286, intron 1 of 3)	18710.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	8.01	1.38	7.4	4.05	5.6	0.0	4.22	1.77	2.5
Merged-chr8-125777986-1	chr8	125777486	125778486	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43783.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	8.58	4.61	11.1	23.62	18.66	22.51	17.96	5.75	6.87
Merged-chr15-58623663-1	chr15	58623163	58624163	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199764.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	22.31	19.35	5.55	35.09	13.06	21.7	11.62	21.67	17.49
Merged-chr1-170973181-1	chr1	170972681	170973681	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077189, intron 1 of 7)	intron (NM_001077189, intron 1 of 7)	2890.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	9.72	2.76	0.0	5.4	6.53	1.61	3.17	2.65	1.87
Merged-chr19-24992345-1	chr19	24991845	24992845	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7184.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	12.59	12.44	12.95	13.49	10.26	11.25	7.39	11.94	13.12
Merged-chr2-157597392-3	chr2	157596892	157597892	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-31031.0	NM_016916	53619.0	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	5.72	5.53	0.0	6.75	3.27	4.02	10.56	5.75	2.5
Merged-chr1-89455672-2	chr1	89455172	89456172	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	CpG	861.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	3.43	3.69	3.7	12.14	2.8	2.41	9.51	1.77	3.75
Merged-chrX-51461640-1	chrX	51461140	51462140	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077202, intron 3 of 4)	intron (NM_001077202, intron 3 of 4)	218837.0	NM_001290468	50786.0	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	1.14	2.3	3.7	0.67	4.2	0.0	0.0	2.65	6.25
Merged-chr9-45911052-1	chr9	45910552	45911552	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104055, intron 4 of 17)	intron (NR_104055, intron 4 of 17)	-4141.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	20.59	32.25	24.97	24.29	16.79	35.37	13.73	19.9	25.61
Merged-chr13-92609979-2	chr13	92609447	92610447	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1191.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	18.31	16.13	12.02	26.99	23.79	28.13	31.69	29.18	13.74
Merged-chr17-15068311-1	chr17	15067811	15068811	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15252.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	6.29	1.38	3.7	5.4	8.4	1.61	5.28	0.88	7.49
Merged-chr10-112835649-1	chr10	112835149	112836149	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-2103.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	6.86	1.84	1.85	2.7	5.13	3.22	2.11	2.21	0.0
Merged-chr12-24786619-1	chr12	24786119	24787119	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-44980.0	NM_026037	67216.0	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	18.31	19.35	17.57	20.24	31.26	19.29	1.06	6.19	1.25
Merged-chr14-20811345-1	chr14	20810845	20811845	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17106.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	1.72	1.38	1.85	8.77	2.8	0.0	3.17	1.33	0.0
Merged-chr15-55280451-1	chr15	55279951	55280951	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27299.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	4.0	3.69	6.47	4.72	4.67	3.22	1.06	5.75	0.0
Merged-chr19-45117032-2	chr19	45116530	45117530	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33685.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	4.0	0.46	0.92	0.67	0.93	1.61	1.06	0.88	6.87
Merged-chr5-99210200-1	chr5	99209700	99210700	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	42727.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.72	5.07	1.85	2.7	1.87	4.82	3.17	1.77	8.74
Merged-chr15-98481627-3	chr15	98481129	98482129	+	720.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010679, intron 2 of 3)	intron (NM_010679, intron 2 of 3)	1054.0	NM_010679	16770.0	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	46.34	35.94	27.75	41.16	29.39	42.6	36.97	28.74	41.22
Merged-chr17-30990418-1	chr17	30989918	30990918	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177465, intron 13 of 21)	intron (NM_177465, intron 13 of 21)	35735.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.57	0.46	0.0	1.35	0.47	1.61	3.17	1.33	2.5
Merged-chr19-9135005-1	chr19	9134505	9135505	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025610, intron 1 of 6)	intron (NM_025610, intron 1 of 6)	561.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	45.19	44.24	26.82	31.04	34.52	34.56	15.84	14.15	9.37
Merged-chr2-84637675-1	chr2	84637175	84638175	+	720.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	11805.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	42.9	38.25	43.47	41.16	23.79	41.8	59.15	45.99	34.97
Merged-chr13-41302856-1	chr13	41302356	41303356	+	720.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53012.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	4.0	0.92	1.85	2.7	0.93	3.22	1.06	2.65	5.0
Merged-chr5-5214733-3	chr5	5214249	5215249	+	719.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	51319.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	9.72	6.91	1.85	4.72	3.73	4.82	7.39	8.4	3.75
Merged-chr4-150626555-3	chr4	150626085	150627085	+	719.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25589.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	4.0	7.83	5.55	7.42	0.47	1.61	3.17	1.77	2.5
Merged-chr16-37994833-3	chr16	37994324	37995324	+	719.8444820000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-22499.0	NR_040565	75175.0	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	7.44	4.15	5.55	4.05	1.87	1.61	2.11	0.0	0.0
Merged-chr10-87890071-2	chr10	87889555	87890555	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	28944.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	12.59	8.75	6.47	6.07	5.6	11.25	7.39	13.71	11.24
Merged-chr1-82771386-2	chr1	82770920	82771920	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2964.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	9.15	2.76	5.55	13.49	3.73	6.43	5.28	2.21	3.12
Merged-chr2-101762690-2	chr2	101762188	101763188	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 3 of 8)	intron (NM_001355625, intron 3 of 8)	35019.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	69.79	66.35	48.1	71.52	64.38	76.36	52.81	51.73	44.97
Merged-chr3-61413381-2	chr3	61412878	61413878	+	719.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48871.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	36.04	54.37	18.5	96.48	67.18	74.75	125.69	150.78	59.33
Merged-chr5-32748206-2	chr5	32747711	32748711	+	719.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-1869.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	49.2	57.6	25.9	53.3	41.52	69.93	34.85	31.84	23.73
Merged-chr3-8928964-2	chr3	8928469	8929469	+	719.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001025261, exon 8 of 8)	3' UTR (NM_001025261, exon 8 of 8)	-5112.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	14.87	20.27	21.27	29.69	20.53	18.49	16.9	11.05	9.99
Merged-chr18-60982164-3	chr18	60981707	60982707	+	719.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177407, intron 16 of 17)	intron (NM_177407, intron 16 of 17)	18653.0	NM_001286809	12322.0	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	5.72	4.15	15.72	3.37	2.33	5.63	14.79	10.61	2.5
Merged-chr9-35559489-3	chr9	35559006	35560006	+	719.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_023292, exon 2 of 5)	5' UTR (NM_023292, exon 2 of 5)	946.0	NM_023292	67049.0	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	10.3	10.14	3.7	8.77	9.8	17.68	10.56	2.65	12.49
Merged-chr12-21426726-2	chr12	21426205	21427205	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9269.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	8.58	6.45	3.7	6.07	3.73	3.22	11.62	8.4	12.49
Merged-chr1-80335260-2	chr1	80334748	80335748	+	719.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	intron (NM_016716, intron 1 of 15)	5442.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	10.3	13.82	7.4	2.7	6.53	11.25	15.84	2.21	9.37
Merged-chrUn_JH584304-63872-1	chrUn_JH584304	63372	64372	+	719.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4183.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	62.31	53.06	0.0
Merged-chr11-119126635-2	chr11	119126141	119127141	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27496.0	NR_105899	102465563.0		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	6.86	2.76	1.85	16.87	13.06	3.22	8.45	1.33	1.25
Merged-chr12-11338389-3	chr12	11337897	11338897	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012038, intron 2 of 3)	intron (NM_012038, intron 2 of 3)	38510.0	NR_106136	102465775.0		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	3.43	5.07	7.4	4.05	1.4	9.65	5.28	0.88	2.5
Merged-chr10-118716548-3	chr10	118716052	118717052	+	719.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR33|LTR|ERVL	152351.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	4.0	2.76	5.55	9.45	1.87	3.22	3.17	0.88	2.5
Merged-chr19-16064300-3	chr19	16063819	16064819	+	719.68335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68512.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	14.87	18.43	5.55	24.96	7.93	12.86	30.63	22.55	14.99
Merged-chr4-45285541-1	chr4	45285041	45286041	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081172, exon 16 of 16)	exon (NM_001081172, exon 16 of 16)	-11627.0	NM_027266	69934.0	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	1.72	1.38	0.0	2.02	3.27	4.82	0.0	0.88	1.25
Merged-chr6-4948158-1	chr6	4947658	4948658	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	44838.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	16.02	19.81	5.55	21.59	26.12	19.29	5.28	3.98	3.75
Merged-chr7-118480486-1	chr7	118479986	118480986	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11489.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	33.18	39.63	33.3	41.83	29.86	44.21	49.64	57.92	25.61
Merged-chr15-101772886-1	chr15	101772386	101773386	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9382.0	NR_033444	406222.0	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	4.0	3.23	0.0	4.05	1.4	4.82	2.11	1.77	0.0
Merged-chr8-33656223-1	chr8	33655723	33656723	+	719.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	B3|SINE|B2	2985.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	6.86	7.83	3.7	6.07	3.27	9.65	46.47	36.7	24.36
Merged-chr6-39274444-1	chr6	39273944	39274944	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-67671.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	16.02	10.6	23.12	15.52	22.86	36.17	11.62	7.96	8.74
Merged-chr6-120540085-1	chr6	120539585	120540585	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8786.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	2.86	3.23	2.77	9.45	4.2	3.22	1.06	2.21	5.62
Merged-chr2-112448675-1	chr2	112448175	112449175	+	719.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6350.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	28.03	26.26	11.1	38.46	36.39	49.03	25.35	19.9	27.48
Merged-chr10-88564280-1	chr10	88563780	88564780	+	719.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175418, intron 8 of 28)	intron (NM_175418, intron 8 of 28)	40872.0	NM_001252372	109272.0	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	8.01	9.22	11.1	4.05	9.33	8.84	10.56	7.52	7.49
Merged-chr4-40777278-2	chr4	40776749	40777749	+	719.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19364.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	17.73	14.28	33.3	27.66	14.0	20.09	40.14	22.99	17.49
Merged-chr4-86697074-2	chr4	86696557	86697557	+	719.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26998.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	1.72	3.23	0.0	5.4	2.33	4.82	2.11	3.1	1.25
Merged-chr16-10384435-2	chr16	10383905	10384905	+	719.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099275, intron 3 of 5)	intron (NM_001099275, intron 3 of 5)	11043.0	NM_001099275	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	8.58	10.14	13.87	13.49	11.66	12.86	14.79	16.36	4.37
Merged-chr13-23446785-3	chr13	23446272	23447272	+	719.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15755.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	38.9	48.84	25.9	26.99	21.46	34.56	35.91	42.89	19.98
Merged-chr4-3646196-3	chr4	3645688	3646688	+	719.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10318.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	26.89	28.57	25.9	30.36	15.86	28.13	42.25	33.16	29.35
Merged-chr14-21995679-1	chr14	21995179	21996179	+	719.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6078.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	1.14	3.23	0.92	4.05	2.33	4.02	4.22	0.44	4.37
Merged-chr17-78903390-2	chr17	78902906	78903906	+	719.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163625, intron 2 of 6)	intron (NM_001163625, intron 2 of 6)	3586.0	NM_001163625	73671.0	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	10.3	14.75	12.95	4.72	11.2	20.9	9.51	4.86	2.5
Merged-chr13-5824402-3	chr13	5823901	5824901	+	719.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33691.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	14.87	12.44	14.8	14.84	11.66	15.27	10.56	3.98	2.5
Merged-chr14-36952388-2	chr14	36951912	36952912	+	719.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027045, intron 1 of 10)	intron (NM_027045, intron 1 of 10)	-11148.0	NM_001347502	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	4.58	5.07	1.85	4.05	4.2	4.02	2.11	2.65	3.75
Merged-chr7-60004350-3	chr7	60003792	60004792	+	719.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082962, intron 2 of 10)	intron (NM_001082962, intron 2 of 10)	907.0	NM_001349694	20646.0	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|SMN|sm-D|snRNP-N	small nuclear ribonucleoprotein N	protein-coding	2.86	6.45	5.55	12.82	11.66	7.23	10.56	10.17	14.99
Merged-chr5-139365443-2	chr5	139364898	139365898	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	4347.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	118.42	129.02	125.79	172.05	125.96	152.72	152.09	173.33	91.81
Merged-chr5-76275160-2	chr5	76274667	76275667	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007715, intron 2 of 22)	intron (NM_007715, intron 2 of 22)	28335.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	9.72	4.61	0.0	4.72	9.8	5.63	4.22	6.19	3.75
Merged-chr17-33092579-2	chr17	33092079	33093079	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024950, intron 1 of 3)	intron (NM_001024950, intron 1 of 3)	3212.0	NM_001024950	240068.0	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	28.6	23.04	22.2	34.41	39.19	27.33	26.4	19.01	24.36
Merged-chr2-129092370-2	chr2	129091869	129092869	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027192, intron 6 of 6)	intron (NM_027192, intron 6 of 6)	-8627.0	NM_009086	20017.0	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	12.59	7.83	7.4	16.19	10.73	11.25	3.17	3.98	7.49
Merged-chr4-48242611-1	chr4	48242111	48243111	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355184, intron 2 of 10)	MER5A|DNA|hAT-Charlie	-29396.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	7.44	7.83	6.47	2.7	2.33	2.41	13.73	1.33	11.24
Merged-chr17-79347444-2	chr17	79346950	79347950	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026514, intron 1 of 1)	intron (NM_026514, intron 1 of 1)	7641.0	NM_026514	260409.0	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	2.29	2.76	5.55	4.72	3.73	4.02	2.11	3.98	2.5
Merged-chr10-94038724-1	chr10	94038224	94039224	+	719.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	RSINE1|SINE|B4	2723.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	4.58	5.99	5.55	12.14	5.13	1.61	72.88	59.69	23.73
Merged-chr6-71931207-2	chr6	71930728	71931728	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22175.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	77.8	101.37	94.35	75.57	65.78	106.1	89.78	84.9	55.58
Merged-chr1-151757290-1	chr1	151756790	151757790	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311165, intron 1 of 20)	intron (NM_001311165, intron 1 of 20)	1916.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	22.31	17.05	11.1	20.24	9.8	9.65	26.4	28.74	5.62
Merged-chr4-98465639-2	chr4	98465133	98466133	+	719.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005784, intron 16 of 19)	intron (NM_001005784, intron 16 of 19)	54606.0	NM_001355177	12695.0	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.57	1.38	3.7	3.37	3.73	3.22	1.06	0.88	2.5
Merged-chr19-32495607-3	chr19	32495103	32496103	+	719.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9834.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	16.02	16.59	11.1	21.59	15.39	11.25	26.4	29.18	21.86
Merged-chr19-29369027-2	chr19	29368545	29369545	+	719.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	1607.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	109.26	112.43	97.12	75.57	75.11	77.16	137.3	152.55	93.68
Merged-chr9-108640011-2	chr9	108639511	108640511	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	9397.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	16.02	20.74	12.02	19.57	13.53	19.29	20.07	18.13	9.99
Merged-chr18-83938369-2	chr18	83937855	83938855	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	148207.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	3.43	2.76	0.92	2.02	4.67	4.82	10.56	4.86	2.5
Merged-chr4-15986676-2	chr4	15986184	15987184	+	719.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 13 of 15)	intron (NM_013752, intron 13 of 15)	27154.0	NM_001355615	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	27.46	26.26	25.9	13.49	19.13	3.22	22.18	20.78	8.12
Merged-chr10-86781201-3	chr10	86780724	86781724	+	719.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175331, intron 1 of 13)	intron (NM_175331, intron 1 of 13)	2219.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	24.03	20.74	5.55	16.19	14.0	27.33	15.84	12.38	10.62
Merged-chr11-94993014-2	chr11	94992518	94993518	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	1806.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	85.24	59.44	92.5	42.51	41.99	108.51	41.19	57.92	63.08
Merged-chr5-24047944-2	chr5	24047440	24048440	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17250.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	37.76	35.02	36.07	56.68	47.12	59.48	28.52	30.95	28.73
Merged-chr2-156311038-2	chr2	156310531	156311531	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_020255)	TTS (NM_020255)	-1442.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	94.39	104.14	105.44	39.13	23.33	34.56	155.26	137.07	74.94
Merged-chr16-10784644-2	chr16	10784175	10785175	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	861.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	21.17	9.22	10.17	27.66	13.06	12.06	23.24	15.03	9.99
Merged-chr5-143532248-2	chr5	143531748	143532748	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-4217.0	NM_001347530	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	10.87	9.68	12.95	12.14	7.0	14.47	8.45	5.75	14.36
Merged-chr7-24965373-2	chr7	24964858	24965858	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4717.0	NR_106013	102465633.0		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	4.58	2.3	1.85	3.37	2.33	4.82	1.06	2.21	6.25
Merged-chr9-55309742-2	chr9	55309262	55310262	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17151.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	34.9	58.98	45.32	118.08	123.16	136.64	62.31	42.45	47.46
Merged-chr4-10919247-2	chr4	10918790	10919790	+	719.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	44792.0	NM_026005	67157.0	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	5.72	8.29	3.7	10.12	5.13	6.43	7.39	11.05	16.24
Merged-chr16-93816011-2	chr16	93815537	93816537	+	719.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-16084.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	177.91	172.79	118.39	194.32	147.88	122.98	216.52	272.82	119.91
Merged-chr18-50095856-3	chr18	50095376	50096376	+	719.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-32325.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	119.56	194.91	136.89	130.9	191.73	147.9	178.5	268.4	139.27
Merged-chr5-122732212-1	chr5	122731712	122732712	+	719.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	24668.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	62.93	40.09	20.35	132.92	59.71	39.39	42.25	36.7	15.61
Merged-chr3-133086082-3	chr3	133085584	133086584	+	719.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356309, intron 1 of 11)	intron (NM_001356309, intron 1 of 11)	5741.0	NM_026231	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	3.43	7.83	0.0	4.72	4.67	1.61	5.28	1.33	7.49
Merged-chr5-21354877-1	chr5	21354377	21355377	+	719.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17796.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	20.02	22.58	37.0	18.89	15.39	22.51	20.07	28.3	19.98
Merged-chrX-167260607-3	chrX	167260098	167261098	+	719.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	intron (NM_001313760, intron 1 of 1)	3731.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	20.02	26.73	17.57	39.13	32.19	45.01	32.74	22.99	36.22
Merged-chr13-91505657-2	chr13	91505150	91506150	+	719.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	44553.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	26.89	22.58	21.27	22.94	20.06	29.74	8.45	4.86	8.74
Merged-chr6-88830276-3	chr6	88829781	88830781	+	719.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11654.0	NM_001362152	80283.0	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	30.32	32.25	28.67	24.96	12.13	13.66	33.8	28.3	16.24
Merged-chr15-39659643-2	chr15	39659105	39660105	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001256384)	promoter-TSS (NM_001256384)	94.0	NM_001256384	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.72	1.84	12.95	4.72	3.27	1.61	1.06	1.33	5.0
Merged-chr1-170932369-2	chr1	170931865	170932865	+	719.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	-4782.0	NM_001160215	98752.0	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	14.87	10.14	6.47	17.54	9.8	20.09	13.73	6.19	11.24
Merged-chr4-65590006-2	chr4	65589516	65590516	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207109, intron 16 of 22)	intron (NM_207109, intron 16 of 22)	-14970.0	NM_053084	69807.0	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	2.86	0.46	3.7	0.0	2.8	2.41	1.06	1.33	3.75
Merged-chr1-52141641-2	chr1	52141137	52142137	+	719.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 11 of 24)	RLTR28|LTR|ERVL	22015.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	8.01	8.75	15.72	7.42	0.93	5.63	9.51	6.19	8.12
Merged-chr8-11549872-3	chr8	11549382	11550382	+	719.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359137, intron 2 of 14)	intron (NM_001359137, intron 2 of 14)	889.0	NM_024248	71941.0	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	55.49	41.47	27.75	35.76	41.99	23.31	38.02	42.45	22.48
Merged-chr2-58286960-3	chr2	58286457	58287457	+	719.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040365)	TTS (NR_040365)	10178.0	NR_040365	100502932.0	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	-	predicted gene 13544	ncRNA	5.72	2.76	0.0	0.67	4.67	0.0	4.22	7.07	1.25
Merged-chr9-54566978-3	chr9	54566488	54567488	+	719.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6909.0	NM_019686	56506.0	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	15.45	18.43	25.9	16.19	19.13	20.09	14.79	9.73	16.24
Merged-chr13-13950839-3	chr13	13950404	13951404	+	719.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3770.0	NM_001362404	97884.0	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	8.58	5.07	0.0	4.05	9.33	9.65	3.17	2.21	1.87
Merged-chr1-57836851-2	chr1	57836357	57837357	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8714.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	20.59	25.8	9.25	53.3	70.91	49.03	45.42	19.9	28.1
Merged-chr11-53893205-2	chr11	53892718	53893718	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1515.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	43.48	46.54	44.4	42.51	54.11	59.48	51.75	64.11	51.84
Merged-chr6-70768982-2	chr6	70768491	70769491	+	719.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009075, intron 8 of 8)	intron (NM_009075, intron 8 of 8)	23184.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	4.0	2.3	1.85	3.37	1.87	1.61	1.06	0.88	0.0
Merged-chr10-10459779-3	chr10	10459275	10460275	+	719.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	MamRep38|DNA|hAT	12539.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	92.1	112.89	91.57	76.92	87.7	89.22	141.53	184.38	108.04
Merged-chr11-96982587-3	chr11	96982085	96983085	+	719.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4897.0	NM_001080964	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.57	1.84	6.47	2.02	1.87	0.0	1.06	1.33	0.0
Merged-chr1-86444225-2	chr1	86443725	86444725	+	719.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17896.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	2.86	5.53	12.95	17.54	10.73	19.29	14.79	12.82	11.24
Merged-chr10-22701683-2	chr10	22701172	22702172	+	719.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	27760.0	NR_106123	102465768.0		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	10.87	14.28	8.32	18.22	13.53	23.31	14.79	3.54	11.24
Merged-chr9-92265957-3	chr9	92265440	92266440	+	719.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011636, intron 5 of 8)	intron (NM_011636, intron 5 of 8)	1421.0	NR_105808	102465203.0		NR_105808	ENSMUSG00000098766	Mir6386	Gm27842|mmu-mir-6386	microRNA 6386	ncRNA	17.16	15.21	11.1	15.52	11.2	4.82	15.84	9.73	2.5
Merged-chr3-154269965-3	chr3	154269465	154270465	+	719.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081263, intron 21 of 21)	intron (NM_001081263, intron 21 of 21)	60595.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	8.58	0.46	3.7	4.05	0.0	0.0	2.11	1.77	0.0
Merged-chr15-103365613-4	chr15	103365121	103366121	+	719.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001314041, intron 1 of 30)	intron (NM_001314041, intron 1 of 30)	1170.0	NM_010577	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	41.19	28.11	19.42	36.43	18.19	57.87	39.08	27.86	33.72
Merged-chr13-12635200-3	chr13	12634712	12635712	+	719.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 1 of 6)	L1MB8|LINE|L1	15183.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	12.01	5.53	0.0	12.14	9.33	0.0	5.28	7.96	0.0
Merged-chr19-43879867-1	chr19	43879367	43880367	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-99.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.72	5.53	6.47	10.12	5.13	4.82	5.28	0.44	4.37
Merged-chr9-121215749-1	chr9	121215249	121216249	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177589, intron 17 of 36)	intron (NM_177589, intron 17 of 36)	61423.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.43	1.38	1.85	6.07	2.8	1.61	3.17	0.44	3.12
Merged-chr7-83882548-1	chr7	83882048	83883048	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030705, exon 1 of 1)	exon (NM_030705, exon 1 of 1)	1793.0	NM_030705	80889.0	Mm.272998	NM_030705	ENSMUSG00000070462	Tlnrd1	AW061151|Mesdc1	talin rod domain containing 1	protein-coding	9.72	7.83	12.95	10.12	6.06	15.27	24.29	20.78	14.99
Merged-chr8-46882133-1	chr8	46881633	46882633	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104754.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	56.63	54.83	66.6	51.95	48.52	41.8	58.09	68.09	45.59
Merged-chr8-124926889-2	chr8	124926393	124927393	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 1 of 4)	intron (NM_053207, intron 1 of 4)	22361.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	7.44	11.06	5.55	8.1	7.46	12.86	4.22	0.44	5.0
Merged-chr14-21985573-1	chr14	21985073	21986073	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145459, exon 3 of 3)	exon (NM_145459, exon 3 of 3)	4028.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.58	3.69	1.85	0.67	1.87	3.22	3.17	0.0	3.75
Merged-chr9-60478130-1	chr9	60477630	60478630	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32905.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	5.72	0.92	5.55	14.84	17.26	19.29	8.45	8.84	9.99
Merged-chr13-93922732-2	chr13	93922235	93923235	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	131958.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	7.44	8.29	15.72	4.05	7.46	4.02	2.11	2.21	1.25
Merged-chr10-83198133-3	chr10	83197648	83198648	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139669.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	2.86	7.37	7.4	6.07	9.33	6.43	4.22	2.21	3.12
Merged-chr6-47648520-1	chr6	47648020	47649020	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	6574.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	19.45	7.37	11.1	10.12	10.73	16.88	0.0	0.88	5.0
Merged-chrX-53269074-2	chrX	53268567	53269567	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001166365, exon 1 of 9)	5' UTR (NM_001166365, exon 1 of 9)	738.0	NM_030167	78755.0	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	2.86	4.61	6.47	8.1	5.13	7.23	2.11	8.84	3.75
Merged-chr4-149158847-1	chr4	149158347	149159347	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081274, intron 6 of 12)	intron (NM_001081274, intron 6 of 12)	7235.0	NM_001356332	110208.0	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	13.16	14.75	7.4	8.1	6.06	27.33	10.56	11.05	13.74
Merged-chr7-141176376-3	chr7	141175884	141176884	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3533.0	NM_001172100	107702.0	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	1.72	4.15	1.85	0.67	5.6	1.61	1.06	7.52	2.5
Merged-chr6-24684715-1	chr6	24684215	24685215	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19720.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	6.29	7.37	4.62	8.77	8.4	1.61	1.06	1.77	7.49
Merged-chr17-10153105-1	chr17	10152605	10153605	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166256.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	1.72	1.38	3.7	1.35	0.47	0.0	5.28	2.65	1.25
Merged-chr14-73450349-1	chr14	73449849	73450849	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59700.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	49.2	31.33	24.05	17.54	43.85	25.72	20.07	11.05	16.24
Merged-chr13-98820704-2	chr13	98820217	98821217	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5268.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	15.45	14.75	21.27	25.64	14.0	37.78	13.73	15.48	18.11
Merged-chr2-91097218-1	chr2	91096718	91097718	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011355, intron 1 of 4)	intron (NM_011355, intron 1 of 4)	540.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	386.14	464.01	236.79	285.41	356.88	301.42	385.51	382.92	214.21
Merged-chr14-103532052-1	chr14	103531552	103532552	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022886, intron 3 of 30)	intron (NM_022886, intron 3 of 30)	18711.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	2.86	5.53	3.7	5.4	2.8	6.43	1.06	3.98	1.25
Merged-chr15-96735904-3	chr15	96735432	96736432	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36204.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	13.16	4.61	0.0	3.37	6.53	4.82	6.34	8.4	9.99
Merged-chr7-88203049-1	chr7	88202549	88203549	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-75036.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	8.01	11.06	12.02	12.14	5.13	16.08	14.79	8.4	18.74
Merged-chr9-104061461-1	chr9	104060961	104061961	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025692, intron 1 of 11)	intron (NM_025692, intron 1 of 11)	1660.0	NM_025692	66663.0	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	12.59	11.98	18.5	10.12	11.66	9.65	9.51	5.31	6.25
Merged-chrX-99677465-1	chrX	99676965	99677965	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-143604.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	10.3	8.29	7.4	17.54	11.66	8.04	20.07	11.94	7.49
Merged-chr6-140815906-3	chr6	140815410	140816410	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	189025.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	16.59	9.68	3.7	10.12	3.73	4.02	9.51	3.98	6.87
Merged-chr4-109124804-1	chr4	109124304	109125304	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355190, intron 2 of 21)	MTE2a|LTR|ERVL-MaLR	-6768.0	NM_001134791	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	18.88	20.27	16.65	12.14	14.46	11.25	16.9	11.05	8.74
Merged-chr17-10745319-1	chr17	10744819	10745819	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	94872.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	8.58	2.76	3.7	2.02	5.6	8.04	4.22	3.1	3.75
Merged-chr4-133370228-2	chr4	133369702	133370702	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039582)	TTS (NR_039582)	426.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	59.49	52.53	74.0	49.93	62.51	75.56	76.05	68.54	33.72
Merged-chr4-150488924-1	chr4	150488424	150489424	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	163250.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	210.52	267.72	164.64	252.34	277.11	196.93	154.2	232.58	104.92
Merged-chr3-22137956-1	chr3	22137456	22138456	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	61304.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	10.87	3.69	3.7	6.75	3.27	4.82	3.17	11.05	7.49
Merged-chr7-102507022-2	chr7	102506523	102507523	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12250.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	2.86	2.76	2.77	4.05	3.73	3.22	1.06	1.33	1.25
Merged-chr5-32077367-2	chr5	32076877	32077877	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-59095.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.29	7.37	11.1	3.37	3.73	4.82	1.06	0.88	2.5
Merged-chr11-68778152-1	chr11	68777652	68778652	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	74979.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	2.29	1.38	0.0	6.07	4.2	1.61	6.34	4.86	7.49
Merged-chr8-121931535-1	chr8	121931035	121932035	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	13377.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	3.43	3.23	4.62	2.7	12.13	10.45	6.34	1.33	2.5
Merged-chr4-19968127-1	chr4	19967627	19968627	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37612.0	NR_040768	74988.0	Mm.445292	NR_040768		4930480G23Rik	-	RIKEN cDNA 4930480G23 gene	ncRNA	5.15	2.76	9.25	6.07	2.8	4.02	4.22	2.21	8.74
Merged-chr6-52920886-2	chr6	52920395	52921395	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-11275.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	53.77	53.91	48.1	64.77	51.32	61.09	51.75	70.75	43.72
Merged-chr19-6360066-1	chr19	6359566	6360566	+	719.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR25A|LTR|ERVK	-3624.0	NM_011750	22668.0	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	31.46	39.63	64.75	29.01	15.86	22.51	65.48	80.47	14.36
Merged-chr3-130691555-3	chr3	130691077	130692077	+	719.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1G3|LTR|ERVL-MaLR	17867.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	5.15	7.83	5.55	17.54	14.46	15.27	13.73	18.57	5.62
Merged-chr4-46591047-1	chr4	46590547	46591547	+	719.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	10882.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	4.58	3.69	8.32	6.75	5.13	6.43	5.28	2.65	1.25
Merged-chr1-43506878-3	chr1	43506371	43507371	+	718.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	61120.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	54.92	71.42	41.62	78.94	40.59	45.82	97.17	105.68	66.2
Merged-chr16-50069268-3	chr16	50068762	50069762	+	718.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	3590.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	2.86	2.76	12.02	3.37	3.73	4.02	4.22	4.42	1.25
Merged-chr11-67550011-3	chr11	67549517	67550517	+	718.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	MIRb|SINE|MIR	17019.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	11.44	3.69	5.55	5.4	3.27	4.82	17.96	8.4	2.5
Merged-chr8-120702222-3	chr8	120701716	120702716	+	718.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33896.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	11.44	7.37	11.1	12.82	5.6	12.86	7.39	11.94	11.24
Merged-chr15-6080950-3	chr15	6080455	6081455	+	718.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36251.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	51.48	92.62	63.82	79.62	82.11	43.4	74.99	95.07	54.33
Merged-chr14-47294418-2	chr14	47293889	47294889	+	718.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3885.0	NM_178684	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	43.48	43.77	31.45	28.34	34.99	33.76	49.64	30.51	32.48
Merged-chr1-192138644-2	chr1	192138125	192139125	+	718.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144814)	promoter-TSS (NM_144814)	-585.0	NM_001290282	214742.0	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	41.19	30.87	35.15	49.93	51.78	49.83	42.25	35.37	28.73
Merged-chr2-79499499-3	chr2	79498998	79499998	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42862.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	3.43	3.23	0.92	0.67	5.13	1.61	3.17	3.54	1.25
Merged-chr17-84270302-3	chr17	84269788	84270788	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-82341.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	25.74	39.17	39.77	21.59	32.66	36.97	33.8	50.41	22.48
Merged-chr1-13052262-2	chr1	13051817	13052817	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61182.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.57	1.38	5.55	2.02	2.33	0.0	2.11	0.88	1.25
Merged-chr4-155121400-3	chr4	155120892	155121892	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356327, intron 10 of 12)	intron (NM_001356327, intron 10 of 12)	34788.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	28.6	14.28	3.7	48.58	28.92	21.7	19.01	11.94	9.37
Merged-chr9-121299402-3	chr9	121298906	121299906	+	718.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	1904.0	NR_152160	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	56.06	29.95	30.52	29.69	23.79	16.88	69.71	71.63	19.98
Merged-chr7-45873377-4	chr7	45872879	45873879	+	718.791687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133950, intron 1 of 4)	intron (NM_133950, intron 1 of 4)	539.0	NM_133950	68137.0	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	83.52	115.66	83.25	84.34	75.57	125.39	114.07	86.66	84.31
Merged-chr17-23748278-3	chr17	23747765	23748765	+	718.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_015472)	promoter-TSS (NR_015472)	-971.0	NR_015472	638247.0	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	28.03	15.67	12.95	8.77	10.73	12.06	20.07	7.07	7.49
Merged-chr15-25035299-2	chr15	25034801	25035801	+	718.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	378463.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	1.14	2.3	0.0	4.05	3.73	1.61	4.22	4.42	0.62
Merged-chr9-119403217-2	chr9	119402774	119403774	+	718.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007397, intron 1 of 9)	CpG	1096.0	NM_001313757	11481.0	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	6.86	11.06	15.72	9.45	9.8	9.65	22.18	8.84	11.24
Merged-chr11-30024616-3	chr11	30024172	30025172	+	718.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_146016, exon 2 of 42)	5' UTR (NM_146016, exon 2 of 42)	1361.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	15.45	7.83	5.55	8.77	4.2	0.0	14.79	13.27	8.74
Merged-chr16-34573696-3	chr16	34573266	34574266	+	718.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-59739.0	NM_177357	545156.0	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	4.58	0.46	3.7	1.35	2.33	0.0	4.22	0.0	7.49
Merged-chr13-5779030-3	chr13	5778528	5779528	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79064.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	280.31	360.33	105.44	273.94	310.69	125.39	197.51	284.31	111.79
Merged-chr13-30764505-3	chr13	30763992	30764992	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	15259.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	14.87	17.97	18.5	17.54	10.73	17.68	11.62	5.75	16.24
Merged-chr15-98804262-3	chr15	98803774	98804774	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001013741, exon 2 of 2)	3' UTR (NM_001013741, exon 2 of 2)	3651.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	5.72	1.38	0.0	6.75	0.47	0.0	2.11	3.54	2.5
Merged-chr10-78159412-1	chr10	78158912	78159912	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10356.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	25.74	24.88	14.8	16.87	16.33	26.53	26.4	34.49	14.99
Merged-chr3-103781685-3	chr3	103781187	103782187	+	718.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301304, intron 1 of 15)	intron (NM_001301304, intron 1 of 15)	9588.0	NM_001301306	15257.0	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	24.03	23.96	36.07	16.87	17.26	13.66	16.9	27.41	14.36
Merged-chr1-32252477-1	chr1	32251977	32252977	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133235, intron 2 of 8)	(CAAAA)n|Simple_repeat|Simple_repeat	79755.0	NM_133235	170771.0	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	2.86	7.83	0.0	4.05	7.0	2.41	9.51	5.75	5.62
Merged-chr2-29650259-1	chr2	29649759	29650759	+	718.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	L2a|LINE|L2	30539.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	34.32	26.73	22.2	36.43	37.79	22.51	27.46	32.28	29.98
Merged-chr19-42778055-1	chr19	42777555	42778555	+	718.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362410, intron 2 of 16)	intron (NM_001362410, intron 2 of 16)	591.0	NM_001362410	192236.0	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	HPS1, biogenesis of lysosomal organelles complex 3 subunit 1	protein-coding	9.15	3.69	2.77	6.07	2.33	4.82	2.11	0.88	3.75
Merged-chr1-178329226-2	chr1	178328710	178329710	+	718.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016805, exon 14 of 14)	3' UTR (NM_016805, exon 14 of 14)	8605.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	20.59	30.87	24.05	31.04	21.93	33.76	20.07	29.63	29.98
Merged-chr7-43532584-2	chr7	43532103	43533103	+	718.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021293, exon 2 of 6)	exon (NM_021293, exon 2 of 6)	568.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	127.57	169.57	98.97	151.81	188.94	145.49	158.43	191.46	109.92
Merged-chr17-28208231-2	chr17	28207739	28208739	+	718.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027185, intron 1 of 10)	intron (NM_027185, intron 1 of 10)	461.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	36.04	21.66	12.02	50.6	61.58	30.54	13.73	9.73	8.74
Merged-chr11-20143899-2	chr11	20143399	20144399	+	718.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-30948.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	7.44	2.76	7.4	7.42	8.4	7.23	6.34	1.77	1.25
Merged-chr19-16435670-3	chr19	16435154	16436154	+	718.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008137)	promoter-TSS (NM_008137)	-13.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.0	2.76	6.47	10.8	4.67	12.06	11.62	2.21	5.0
Merged-chr13-100854409-2	chr13	100853899	100854899	+	718.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20972.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	2.29	4.61	5.55	13.49	6.53	3.22	4.22	3.98	8.74
Merged-chr7-75774759-3	chr7	75774268	75775268	+	718.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-73570.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	29.75	19.35	10.17	15.52	12.13	25.72	26.4	15.03	11.24
Merged-chr14-32783251-3	chr14	32782758	32783758	+	718.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2705.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	21.17	25.34	15.72	17.54	22.39	24.11	34.85	29.18	9.99
Merged-chr4-47280329-2	chr4	47279832	47280832	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 17 of 39)	intron (NM_009928, intron 17 of 39)	72320.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.72	2.76	1.85	4.72	1.87	0.8	6.34	4.42	1.25
Merged-chr13-76393289-2	chr13	76392795	76393795	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 1 of 20)	intron (NM_030174, intron 1 of 20)	8334.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	2.86	4.61	5.55	4.05	5.13	3.22	3.17	4.86	2.5
Merged-chr5-142879521-3	chr5	142878988	142879988	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033312, intron 3 of 4)	intron (NM_001033312, intron 3 of 4)	15750.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	3.43	2.3	2.77	2.02	0.93	1.61	6.34	1.77	3.75
Merged-chr10-57776823-3	chr10	57776332	57777332	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8091.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	64.07	71.88	26.82	56.0	60.18	81.99	44.36	45.99	33.1
Merged-chr3-90438711-1	chr3	90438211	90439211	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-5075.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	36.61	33.64	22.2	22.27	23.33	45.82	42.25	52.18	25.61
Merged-chr13-45963160-2	chr13	45962646	45963646	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 1 of 6)	intron (NM_001199304, intron 1 of 6)	1845.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	88.1	87.55	91.57	85.69	75.57	68.32	108.79	79.59	54.96
Merged-chr17-5733622-2	chr17	5733079	5734079	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-65078.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.43	6.45	0.0	4.05	2.33	3.22	3.17	1.77	1.87
Merged-chr7-4134326-2	chr7	4133834	4134834	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001305822, exon 14 of 14)	3' UTR (NM_001305822, exon 14 of 14)	2592.0	NR_033548	100037396.0	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924	RIKEN cDNA D030047H15 gene	ncRNA	16.59	17.05	25.9	20.92	22.86	29.74	32.74	14.59	14.99
Merged-chr11-4843637-2	chr11	4843152	4844152	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010898, intron 1 of 15)	B3|SINE|B2	5892.0	NM_001252250	18016.0	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	6.86	4.61	1.85	6.75	1.87	3.22	6.34	0.88	6.25
Merged-chr7-63875613-1	chr7	63875113	63876113	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41244.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.57	1.38	3.7	2.02	2.33	4.82	0.0	0.44	4.37
Merged-chr4-135947949-1	chr4	135947449	135948449	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357529, exon 1 of 9)	5' UTR (NM_001357529, exon 1 of 9)	543.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	57.21	52.99	37.0	85.69	76.04	73.14	61.26	61.9	40.59
Merged-chr7-125546515-1	chr7	125546015	125547015	+	718.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5767.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	12.59	11.52	3.7	5.4	4.67	1.61	31.69	32.28	23.11
Merged-chr12-3820814-2	chr12	3820307	3821307	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	13647.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	16.02	17.05	11.1	14.17	10.73	10.45	30.63	29.63	13.74
Merged-chr15-93485515-1	chr15	93485015	93486015	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358750, intron 6 of 6)	intron (NM_001358750, intron 6 of 6)	87051.0	NM_001285863	223828.0	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	10.3	14.28	11.1	9.45	11.2	31.35	17.96	10.17	6.25
Merged-chr5-125404236-2	chr5	125403717	125404717	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14200.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	33.18	47.92	25.9	35.09	49.45	25.72	48.58	67.21	16.24
Merged-chr5-100590687-2	chr5	100590229	100591229	+	718.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18524.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	70.93	70.96	35.15	47.23	32.66	38.58	83.44	65.44	39.35
Merged-chr3-15277215-3	chr3	15276718	15277718	+	718.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	55084.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	9.15	12.9	7.4	16.19	16.79	17.68	16.9	17.69	23.73
Merged-chr5-125178639-2	chr5	125178190	125179190	+	718.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	CpG	524.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	94.39	79.72	105.44	80.29	89.57	127.8	100.34	80.92	58.71
Merged-chr6-116654347-2	chr6	116653855	116654855	+	718.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 3 of 10)	intron (NM_178045, intron 3 of 10)	3671.0	NM_001166580	213393.0	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Depp1|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	6.29	9.68	2.77	4.05	2.33	7.23	1.06	8.4	4.37
Merged-chr14-25773882-2	chr14	25773378	25774378	+	718.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5022.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	6.29	4.61	5.55	3.37	3.73	1.61	4.22	1.77	2.5
Merged-chr9-106314870-2	chr9	106314385	106315385	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	33824.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	24.6	22.12	27.75	21.59	13.06	28.94	8.45	9.29	6.25
Merged-chr5-101840578-2	chr5	101840089	101841089	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 66 of 66)	L1M2|LINE|L1	75459.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.72	7.83	3.7	2.7	2.8	4.82	13.73	11.94	4.37
Merged-chr5-142475897-2	chr5	142475336	142476336	+	718.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172725, intron 14 of 16)	intron (NM_172725, intron 14 of 16)	11905.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	8.58	4.61	5.55	5.4	3.27	9.65	6.34	0.88	11.24
Merged-chr3-138012566-2	chr3	138012054	138013054	+	718.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	-31005.0	NM_011932	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	6.86	3.69	3.7	10.12	10.26	17.68	10.56	7.52	3.75
Merged-chr2-25072385-3	chr2	25071881	25072881	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7942.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	5.15	2.76	0.0	2.7	2.8	2.41	6.34	2.21	0.0
Merged-chr16-64853180-3	chr16	64852713	64853713	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357416, intron 2 of 2)	intron (NM_001357416, intron 2 of 2)	1212.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	34.9	63.59	38.85	31.04	46.65	38.58	44.36	74.28	25.61
Merged-chr7-3300412-3	chr7	3299910	3300910	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3122.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	4.58	8.75	9.25	0.0	2.8	4.82	6.34	7.07	3.75
Merged-chr1-118391095-1	chr1	118390595	118391595	+	718.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359330, intron 1 of 39)	MTD|LTR|ERVL-MaLR	2037.0	NM_001359334	76707.0	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	8.01	7.83	10.17	7.42	5.6	0.8	3.17	3.54	2.5
Merged-chr9-120602093-3	chr9	120601592	120602592	+	718.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24761.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	14.3	15.67	11.1	28.34	30.32	33.76	5.28	9.29	13.12
Merged-chr5-24542850-3	chr5	24542343	24543343	+	718.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177676)	TTS (NM_177676)	-1865.0	NM_001310476	117590.0	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	3.43	4.61	9.25	4.05	6.06	6.43	3.17	1.77	2.5
Merged-chr5-99361962-3	chr5	99361486	99362486	+	718.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-109059.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	128.71	128.56	128.57	132.92	100.3	133.43	162.65	160.06	99.3
Merged-chr2-180925349-2	chr2	180924858	180925858	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NM_001163247	329581.0	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	6.86	3.69	0.0	4.05	1.4	0.0	2.11	0.0	2.5
Merged-chr13-49162875-1	chr13	49162375	49163375	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14547.0	NM_001290311	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	1.14	1.84	0.0	4.72	1.87	0.0	3.17	0.88	2.5
Merged-chr9-104140543-2	chr9	104140026	104141026	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13883.0	NM_145700	252837.0	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	13.16	12.44	13.87	29.01	24.72	52.25	33.8	34.93	21.23
Merged-chr15-79804543-2	chr15	79804031	79805031	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030689, exon 1 of 5)	exon (NM_030689, exon 1 of 5)	178.0	NM_030689	73340.0	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	14.87	2.3	1.85	4.72	2.33	1.61	6.34	0.0	0.0
Merged-chr10-62582882-1	chr10	62582382	62583382	+	718.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019553, intron 14 of 14)	intron (NM_019553, intron 14 of 14)	-4425.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	57.78	77.41	64.75	75.57	62.98	69.93	90.83	84.01	33.1
Merged-chr1-120197393-3	chr1	120196875	120197875	+	718.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67905.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	1.72	0.46	0.0	5.4	0.47	1.61	2.11	0.44	2.5
Merged-chr10-60739810-3	chr10	60739338	60740338	+	718.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	12944.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	43.48	27.19	37.92	26.31	12.6	35.37	34.85	28.74	28.73
Merged-chr10-80074414-3	chr10	80073903	80074903	+	718.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359635, intron 4 of 31)	PB1D9|SINE|Alu	1036.0	NM_001359636	216161.0	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch 2	protein-coding	116.7	99.07	71.22	134.94	92.84	76.36	164.76	121.6	56.21
Merged-chr9-63611169-3	chr9	63610640	63611640	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	8494.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	77.8	69.58	76.77	89.06	50.38	72.34	91.89	84.45	51.84
Merged-chr2-14165805-3	chr2	14165309	14166309	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-8715.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	43.48	28.11	27.75	24.29	19.13	24.11	27.46	14.59	18.74
Merged-chr10-22335620-3	chr10	22335124	22336124	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-26270.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	14.87	8.75	12.95	9.45	15.39	4.82	2.11	3.1	3.12
Merged-chr14-8171857-3	chr14	8171367	8172367	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024221, intron 2 of 9)	intron (NM_024221, intron 2 of 9)	1125.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	21.74	23.04	16.65	35.09	13.06	10.45	29.57	18.13	3.75
Merged-chr6-148940554-3	chr6	148940037	148941037	+	718.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361398, intron 1 of 4)	B2_Mm2|SINE|B2	4289.0	NM_001355645	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	1.14	1.84	1.85	3.37	3.27	0.8	3.17	2.21	2.5
Merged-chr18-24336011-2	chr18	24335527	24336527	+	718.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3339.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	2.86	6.45	2.77	6.75	5.13	1.61	2.11	1.77	2.5
Merged-chr14-21231895-2	chr14	21231384	21232384	+	718.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134079, intron 4 of 10)	L1M3|LINE|L1	155732.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	1.72	2.3	0.0	2.02	5.6	4.82	6.34	3.54	0.0
Merged-chr12-86801422-2	chr12	86800894	86801894	+	718.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	67025.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	81.8	59.44	38.85	97.16	75.57	70.73	78.16	69.86	40.59
Merged-chr8-95024558-2	chr8	95024050	95025050	+	718.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173036, intron 2 of 11)	intron (NM_173036, intron 2 of 11)	6858.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	2.86	2.76	3.7	6.75	7.0	3.22	5.28	6.63	2.5
Merged-chr16-16035620-2	chr16	16035127	16036127	+	718.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	L1_Rod|LINE|L1	111224.0	NM_001355731	224008.0	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	8.58	11.06	7.4	6.07	8.4	8.04	10.56	9.29	21.86
Merged-chr2-131494658-2	chr2	131494173	131495173	+	718.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	2811.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	25.17	21.2	24.05	20.24	12.13	9.65	25.35	11.5	14.36
Merged-chr5-64505436-2	chr5	64504948	64505948	+	718.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28440.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	44.05	71.42	63.82	39.13	39.65	45.82	89.78	80.47	53.08
Merged-chr11-70897862-3	chr11	70897369	70898369	+	718.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019400, intron 5 of 17)	intron (NM_019400, intron 5 of 17)	53108.0	NM_001291142	54189.0	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	38.33	22.12	21.27	22.27	11.66	20.9	19.01	22.55	16.86
Merged-chr4-139249476-3	chr4	139248975	139249975	+	718.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037761, intron 2 of 9)	intron (NM_001037761, intron 2 of 9)	55364.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	75.51	50.23	64.75	83.66	55.51	78.77	96.11	67.65	33.72
Merged-chr15-101105606-3	chr15	101105123	101106123	+	718.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10132.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	21.74	14.75	13.87	14.17	4.67	3.22	41.19	17.69	26.23
Merged-chr1-23382116-2	chr1	23381597	23382597	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	1078.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	54.35	80.64	46.25	44.53	35.45	27.33	23.24	43.77	38.72
Merged-chr4-41636732-2	chr4	41636209	41637209	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175138, intron 19 of 19)	intron (NM_175138, intron 19 of 19)	3593.0	NM_027147	69638.0	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	7.44	2.3	7.4	7.42	4.2	0.0	3.17	1.77	10.62
Merged-chr8-73208350-2	chr8	73207870	73208870	+	718.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	145170.0	NM_001317391	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	9.15	2.76	10.17	3.37	0.47	1.61	3.17	9.73	5.0
Merged-chr13-59002381-2	chr13	59001867	59002867	+	718.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	194670.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	15.45	29.49	22.2	29.01	28.46	29.74	69.71	76.05	33.1
Merged-chr3-87274545-3	chr3	87274034	87275034	+	718.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11010.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.86	2.3	7.4	4.72	3.27	0.0	2.11	4.42	5.62
Merged-chr15-7264021-1	chr15	7263521	7264521	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289496, intron 6 of 22)	intron (NM_001289496, intron 6 of 22)	123479.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.0	2.76	3.7	1.35	0.93	0.0	0.0	0.44	1.25
Merged-chr19-41481730-1	chr19	41481230	41482230	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43522.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	35.47	42.39	37.92	37.11	38.25	40.99	41.19	39.8	20.61
Merged-chr1-165661379-1	chr1	165660879	165661879	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26838.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	93.82	65.89	74.0	97.16	69.98	95.65	82.38	103.02	59.95
Merged-chr16-46148750-2	chr16	46148173	46149173	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6404.0	NM_001304528	11615.0	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615	predicted gene 4737	protein-coding	9.72	21.66	10.17	20.92	23.33	18.49	9.51	10.61	12.49
Merged-chr3-107099728-2	chr3	107099228	107100228	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1839.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	23.45	15.21	25.9	70.85	55.51	45.01	203.84	180.85	48.09
Merged-chr11-79112885-1	chr11	79112385	79113385	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	33588.0	NM_013571	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	26.89	11.98	13.87	21.59	16.79	8.84	12.67	10.61	7.49
Merged-chr3-105900459-1	chr3	105899959	105900959	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	intron (NM_027025, intron 1 of 6)	-3962.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	69.22	58.06	34.22	69.5	45.25	20.9	46.47	47.75	27.48
Merged-chr2-128863915-1	chr2	128863415	128864415	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024237)	promoter-TSS (NM_024237)	-17.0	NM_024237	70370.0	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	6.29	2.3	0.0	7.42	3.73	4.82	4.22	2.21	4.37
Merged-chr12-12268250-1	chr12	12267750	12268750	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	6111.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	56.63	50.69	36.07	56.0	41.52	62.7	42.25	36.7	29.98
Merged-chr11-101003256-1	chr11	101002756	101003756	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6196.0	NM_016920	11975.0	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	3.43	5.07	3.7	8.1	5.13	2.41	5.28	1.33	3.75
Merged-chr1-35759894-1	chr1	35759394	35760394	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-308506.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.29	4.15	5.55	7.42	0.93	2.41	5.28	0.0	1.25
Merged-chr8-47940727-1	chr8	47940227	47941227	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	49824.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	17.73	18.43	19.42	16.19	14.93	26.53	22.18	15.48	14.99
Merged-chr5-107961650-1	chr5	107961150	107962150	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	25427.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	35.47	68.66	36.07	53.98	48.98	81.99	48.58	62.79	54.33
Merged-chr16-25059774-1	chr16	25059274	25060274	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_040374, exon 1 of 3)	non-coding (NR_040374, exon 1 of 3)	135.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	99.54	97.69	61.05	120.1	121.76	146.29	108.79	122.92	78.69
Merged-chr1-86191027-1	chr1	86190527	86191527	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001310702, exon 12 of 25)	exon (NM_001310702, exon 12 of 25)	36247.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	5.72	0.92	1.85	2.02	2.33	0.0	0.0	2.65	3.12
Merged-chr8-77425028-1	chr8	77424528	77425528	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	B3A|SINE|B2	-92028.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	12.59	9.22	0.92	7.42	7.0	7.23	9.51	4.42	6.25
Merged-chr11-69031152-1	chr11	69030652	69031652	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013256, exon 14 of 23)	exon (NM_001013256, exon 14 of 23)	-14485.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	39.47	40.55	34.22	53.3	35.92	48.23	45.42	43.33	38.1
Merged-chr11-113811350-1	chr11	113810850	113811850	+	718.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172800, intron 36 of 44)	intron (NM_172800, intron 36 of 44)	-59535.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	1.14	2.76	3.7	4.72	1.87	4.02	3.17	2.21	4.37
Merged-chr17-5494946-1	chr17	5494446	5495446	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	2346.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	56.06	84.32	51.8	89.74	75.11	71.54	81.33	68.09	39.97
Merged-chr3-15284130-3	chr3	15283643	15284643	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48159.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	142.44	171.41	92.5	169.35	191.27	105.3	105.62	131.77	71.2
Merged-chr1-64970907-1	chr1	64970407	64971407	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14083.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.72	3.69	0.0	2.7	5.13	2.41	3.17	3.1	4.37
Merged-chr6-128889783-1	chr6	128889283	128890283	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289706, intron 2 of 6)	intron (NM_001289706, intron 2 of 6)	1341.0	NM_001254946	232406.0	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	127.0	171.87	144.29	96.48	96.57	82.79	139.42	136.19	77.44
Merged-chr7-34984588-1	chr7	34984088	34985088	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	71978.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	5.15	8.75	1.85	4.72	5.6	8.84	8.45	2.65	3.75
Merged-chr1-181545576-1	chr1	181545076	181546076	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34125.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	2.29	2.76	3.7	1.35	2.8	1.61	7.39	1.33	2.5
Merged-chr1-171330161-1	chr1	171329661	171330661	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	592.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	145.3	74.19	110.99	93.79	44.78	110.92	101.39	67.21	48.71
Merged-chr15-58050204-1	chr15	58049704	58050704	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009572, intron 3 of 3)	intron (NM_009572, intron 3 of 3)	-15910.0	NM_029418	75758.0	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	6.29	5.53	5.55	6.07	6.53	9.65	10.56	12.82	3.75
Merged-chr15-53688873-1	chr15	53688373	53689373	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-74594.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	9.15	5.53	3.7	6.75	3.73	0.0	1.06	5.75	3.75
Merged-chr8-90877915-1	chr8	90877415	90878415	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	49080.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	132.72	135.47	135.97	139.67	126.89	121.37	134.14	121.6	58.71
Merged-chr3-95154133-1	chr3	95153633	95154633	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6287.0	NR_073550	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	2.86	2.76	1.85	2.7	1.4	1.61	3.17	0.88	5.0
Merged-chr5-110174540-3	chr5	110174046	110175046	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040430, intron 1 of 2)	RLTR31D_MM|LTR|ERVK	1958.0	NR_040431	100504007.0	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	-	predicted gene 15787	ncRNA	61.21	58.98	77.7	53.98	49.92	48.23	54.92	49.08	57.46
Merged-chr3-87322824-1	chr3	87322324	87323324	+	718.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-35057.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	4.0	1.38	0.0	4.05	0.0	3.22	12.67	3.54	5.0
Merged-chr13-37784424-1	chr13	37783924	37784924	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41614.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.44	11.98	3.7	12.14	9.33	12.86	7.39	3.54	7.49
Merged-chrX-48175787-1	chrX	48175287	48176287	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172465, intron 9 of 9)	L1MB8|LINE|L1	29351.0	NM_028773	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	8.01	2.76	3.7	8.1	4.67	18.49	2.11	1.33	7.49
Merged-chr6-134079757-2	chr6	134079251	134080251	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	44051.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	15.45	11.06	14.8	15.52	13.53	24.92	17.96	13.27	23.11
Merged-chrX-6922375-2	chrX	6921872	6922872	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177914, intron 12 of 26)	intron (NM_177914, intron 12 of 26)	48888.0	NM_177914	331374.0	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	2.29	3.23	0.0	3.37	2.8	4.82	0.0	3.1	3.75
Merged-chr18-69421461-1	chr18	69420961	69421961	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	75301.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	7.44	8.29	1.85	9.45	4.2	11.25	5.28	2.21	12.49
Merged-chr4-89363503-1	chr4	89363003	89364003	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-52471.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	5.15	5.99	5.55	12.82	14.0	8.84	7.39	6.63	9.37
Merged-chr16-14131003-1	chr16	14130503	14131503	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 16 of 26)	intron (NM_001081154, intron 16 of 26)	28271.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	26.89	27.65	42.55	20.92	20.99	15.27	19.01	35.37	12.49
Merged-chr10-94577728-1	chr10	94577228	94578228	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177026, intron 1 of 3)	URR1A|DNA|hAT-Charlie	1465.0	NM_177026	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	38.9	28.57	5.55	58.7	41.52	45.82	26.4	16.8	22.48
Merged-chr2-6705005-1	chr2	6704505	6705505	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	16657.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	145.3	146.99	92.5	113.35	98.43	69.93	114.07	142.38	70.57
Merged-chr11-59534545-3	chr11	59534052	59535052	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-7017.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	19.45	27.65	37.0	21.59	19.59	37.78	23.24	23.88	35.6
Merged-chr5-34335869-1	chr5	34335369	34336369	+	718.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011278)	promoter-TSS (NM_011278)	-381.0	NM_011278	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	139.01	129.94	110.99	122.8	108.23	103.69	139.42	154.76	88.68
Merged-chr12-51706988-1	chr12	51706488	51707488	+	718.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-15074.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	6.86	4.61	1.85	6.07	14.0	10.45	4.22	3.98	3.75
Merged-chr14-27397769-3	chr14	27397271	27398271	+	717.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027871, intron 9 of 10)	intron (NM_027871, intron 9 of 10)	-31063.0	NM_028945	218850.0	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	20.59	16.59	9.25	16.19	13.06	23.31	15.84	10.17	14.36
Merged-chr5-124536938-3	chr5	124536392	124537392	+	717.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3899.0	NM_019770	56334.0	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	13.16	11.52	24.05	10.8	14.0	8.84	13.73	9.73	10.62
Merged-chr3-51636849-3	chr3	51636353	51637353	+	717.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24326.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	30.89	22.58	12.95	35.09	14.93	13.66	28.52	16.36	22.48
Merged-chr17-46546358-3	chr17	46545855	46546855	+	717.877747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081335)	promoter-TSS (NM_001081335)	33.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	32.04	18.89	20.35	42.51	29.39	13.66	32.74	26.53	15.61
Merged-chr15-85709417-3	chr15	85708853	85709853	+	717.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2034.0	NR_029727	387245.0		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	3.43	2.3	4.62	9.45	0.93	1.61	2.11	2.65	2.5
Merged-chr1-43321150-2	chr1	43320643	43321643	+	717.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124382.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	48.05	52.99	12.02	44.53	31.72	15.27	42.25	50.41	34.97
Merged-chr2-170154362-2	chr2	170153846	170154846	+	717.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11671.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	74.94	96.76	95.27	73.54	70.91	107.71	118.29	143.7	94.93
Merged-chr5-45677864-3	chr5	45677361	45678361	+	717.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019438, intron 7 of 20)	MTD|LTR|ERVL-MaLR	7936.0	NM_019438	54392.0	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	8.01	11.98	5.55	4.72	7.0	8.04	3.17	8.4	3.75
Merged-chr12-87275085-3	chr12	87274585	87275585	+	717.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8357.0	NM_146036	217737.0	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	18.31	11.98	24.05	10.8	9.33	22.51	14.79	5.31	18.74
Merged-chr12-80111429-5	chr12	80110907	80111907	+	717.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	1606.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	46.91	57.6	22.2	48.58	43.39	32.96	52.81	38.47	24.98
Merged-chr3-136799102-2	chr3	136798597	136799597	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 2 of 13)	intron (NM_008913, intron 2 of 13)	129031.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	10.3	3.69	12.95	11.47	3.73	5.63	4.22	2.21	3.12
Merged-chr13-41068298-2	chr13	41067798	41068798	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145802, intron 2 of 11)	MLT1B|LTR|ERVL-MaLR	2167.0	NM_008547	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	5.15	3.69	4.62	5.4	1.87	6.43	12.67	3.54	4.37
Merged-chr5-64634979-2	chr5	64634485	64635485	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-24286.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.43	14.75	12.95	12.82	9.8	11.25	9.51	10.17	12.49
Merged-chr17-86168003-2	chr17	86167547	86168547	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011104, exon 1 of 15)	5' UTR (NM_011104, exon 1 of 15)	262.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	47.48	27.19	44.4	35.09	22.39	20.09	29.57	14.59	19.36
Merged-chr16-38560098-3	chr16	38559609	38560609	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205286, intron 1 of 8)	ID_B1|SINE|B4	1411.0	NM_001205286	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	8.58	7.37	1.85	8.1	2.33	1.61	4.22	2.21	8.12
Merged-chr18-12939360-2	chr18	12938849	12939849	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	2492.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	9.15	9.22	7.4	15.52	12.6	4.82	7.39	15.03	13.12
Merged-chr19-14641912-2	chr19	14641391	14642391	+	717.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43708.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.0	7.83	7.4	5.4	3.27	10.45	1.06	9.29	3.12
Merged-chr1-173511816-2	chr1	173511314	173512314	+	717.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	24143.0	NM_001024721	545384.0	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	9.15	5.99	12.02	12.14	10.26	16.08	10.56	7.07	12.49
Merged-chr12-8522925-4	chr12	8522423	8523423	+	717.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	16643.0	NM_001038660	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	24.6	27.65	18.5	29.69	17.73	24.92	27.46	19.9	36.22
Merged-chr12-82189989-2	chr12	82189475	82190475	+	717.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	19959.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	22.88	24.88	9.25	26.99	25.19	22.51	20.07	13.71	9.99
Merged-chr1-133134461-2	chr1	133133963	133134963	+	717.674988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3297.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	58.35	104.6	44.4	88.39	70.91	53.85	59.15	77.82	38.72
Merged-chr6-82808189-3	chr6	82807676	82808676	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33722.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	17.16	10.6	14.8	21.59	13.53	29.74	36.97	21.22	13.12
Merged-chr6-31213748-1	chr6	31213248	31214248	+	717.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	4726.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	8.01	11.52	12.02	11.47	9.33	14.47	6.34	15.48	7.49
Merged-chr14-26526390-3	chr14	26525892	26526892	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	8232.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	13.73	15.67	12.95	14.17	14.46	13.66	11.62	11.05	11.24
Merged-chr13-45512671-3	chr13	45512151	45513151	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025508, intron 1 of 8)	intron (NM_025508, intron 1 of 8)	5207.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.43	5.99	0.0	6.75	1.4	1.61	3.17	5.31	4.37
Merged-chr6-55416132-2	chr6	55415633	55416633	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	19246.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	5.72	6.45	0.92	6.07	5.13	8.04	1.06	3.1	2.5
Merged-chr16-94647334-3	chr16	94646832	94647832	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	ORR1G|LTR|ERVL-MaLR	35913.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	12.01	8.75	14.8	7.42	17.26	17.68	10.56	7.96	13.74
Merged-chr16-26105620-3	chr16	26105091	26106091	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_173379, exon 1 of 15)	exon (NM_173379, exon 1 of 15)	193.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.58	1.84	5.55	6.07	2.8	1.61	2.11	0.44	1.25
Merged-chr17-29501525-1	chr17	29501025	29502025	+	717.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	10480.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.15	3.69	2.77	2.7	2.8	4.82	1.06	0.88	1.25
Merged-chr4-144896499-2	chr4	144895961	144896961	+	717.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	3324.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	25.74	16.59	34.22	26.99	27.52	32.15	36.97	23.43	18.74
Merged-chr8-70647033-3	chr8	70646534	70647534	+	717.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12704.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	199.07	143.3	54.57	43.18	20.53	12.06	104.56	118.5	31.23
Merged-chr13-97486094-2	chr13	97485589	97486589	+	717.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110430, intron 2 of 2)	intron (NR_110430, intron 2 of 2)	3388.0	NR_110431	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.0	3.69	1.85	6.07	5.13	2.41	2.11	3.1	1.25
Merged-chr10-53448757-2	chr10	53448268	53449268	+	717.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38886.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	3.43	7.37	0.92	8.1	7.0	8.04	14.79	6.63	14.99
Merged-chr7-25805709-3	chr7	25805184	25806184	+	717.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028775, intron 7 of 8)	intron (NM_028775, intron 7 of 8)	10846.0	NM_028775	74134.0	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	6.29	2.3	12.02	2.7	1.87	3.22	5.28	0.88	3.75
Merged-chr15-85646286-3	chr15	85645828	85646828	+	717.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57445.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	41.19	45.62	49.95	47.9	53.65	28.94	63.37	45.99	41.84
Merged-chr11-78343519-3	chr11	78343001	78344001	+	717.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011676)	promoter-TSS (NM_011676)	6.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	33.75	29.49	35.15	32.39	26.12	35.37	45.42	20.78	29.98
Merged-chr8-70613974-3	chr8	70613492	70614492	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2852.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	84.66	110.59	82.32	73.54	60.18	101.28	108.79	115.85	89.31
Merged-chr7-96213284-3	chr7	96212759	96213759	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1588.0	NM_001310760	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	5.72	0.0	0.0	2.7	4.2	4.82	1.06	1.77	1.87
Merged-chr8-83743065-3	chr8	83742574	83743574	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-1763.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	217.95	183.39	105.44	164.63	120.36	87.61	174.27	197.21	134.27
Merged-chr10-19103212-3	chr10	19102711	19103711	+	717.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38538.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	14.87	14.75	10.17	12.82	11.2	6.43	13.73	13.27	13.12
Merged-chr11-106659400-1	chr11	106658900	106659900	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001032378, intron 13 of 13)	intron (NM_001032378, intron 13 of 13)	-46470.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	80.66	77.87	76.77	72.19	49.92	68.32	59.15	62.79	65.58
Merged-chr1-144316688-1	chr1	144316188	144317188	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67584.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	58.35	40.55	19.42	58.03	47.58	66.71	38.02	38.03	32.48
Merged-chr19-40687827-1	chr19	40687327	40688327	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	28057.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	30.89	23.5	15.72	37.78	23.33	23.31	62.31	45.99	18.11
Merged-chr10-121460617-2	chr10	121460116	121461116	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	RLTR25B|LTR|ERVK	15634.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	81.8	131.78	85.1	82.32	70.91	65.91	86.61	80.03	44.34
Merged-chr11-97394298-1	chr11	97393798	97394798	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_138657, exon 10 of 10)	3' UTR (NM_138657, exon 10 of 10)	31747.0	NM_138657	192157.0	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	5.15	4.15	6.47	4.05	3.27	8.04	2.11	2.21	2.5
Merged-chr7-120984060-1	chr7	120983560	120984560	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028955, intron 1 of 7)	intron (NM_028955, intron 1 of 7)	1551.0	NM_028955	74466.0	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	14.3	12.9	15.72	42.51	32.66	36.97	30.63	22.55	13.12
Merged-chr16-95842939-2	chr16	95842451	95843451	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040484, intron 2 of 3)	intron (NR_040484, intron 2 of 3)	55762.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.29	10.14	5.55	10.8	6.06	9.65	13.73	7.96	6.87
Merged-chr17-35264645-2	chr17	35264096	35265096	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	1473.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	52.63	44.7	16.65	42.51	20.99	13.66	47.53	44.22	43.72
Merged-chr18-80420281-2	chr18	80419772	80420772	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026295, intron 12 of 12)	intron (NM_026295, intron 12 of 12)	49395.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	20.59	8.29	6.47	4.72	8.86	9.65	11.62	10.17	11.87
Merged-chr7-92711794-1	chr7	92711294	92712294	+	717.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	29665.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	1.14	4.15	3.7	1.35	4.2	5.63	6.34	3.54	5.0
Merged-chrX-7842994-2	chrX	7842506	7843506	+	717.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 2 of 9)	intron (NM_001290537, intron 2 of 9)	924.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	28.03	36.86	46.25	30.36	14.0	30.54	24.29	30.95	29.35
Merged-chr5-21654487-1	chr5	21653987	21654987	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026034, intron 4 of 5)	intron (NM_026034, intron 4 of 5)	8503.0	NM_026034	67211.0	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.57	0.0	0.0	5.4	4.67	3.22	6.34	0.0	1.25
Merged-chr7-7282346-1	chr7	7281846	7282846	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001302386)	TTS (NM_001302386)	-4057.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	32.61	55.29	45.32	37.78	53.65	46.62	66.54	73.84	34.35
Merged-chr17-84085934-2	chr17	84085440	84086440	+	717.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045458, exon 4 of 6)	non-coding (NR_045458, exon 4 of 6)	7280.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	37.76	29.03	39.77	45.21	31.72	62.7	42.25	46.43	28.1
Merged-chr5-16466488-3	chr5	16465987	16466987	+	717.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87008.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	36.04	42.39	20.35	49.25	45.72	38.58	40.14	42.45	27.48
Merged-chr1-78485477-3	chr1	78484994	78485994	+	717.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	MLT1F2-int|LTR|ERVL-MaLR	3403.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	7.44	11.06	12.02	10.8	5.6	7.23	15.84	5.75	11.24
Merged-chr11-59941637-2	chr11	59941129	59942129	+	717.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6518.0	NR_045273	100504121.0	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	6.29	0.92	2.77	6.75	7.46	9.65	2.11	3.54	0.62
Merged-chr7-126752023-2	chr7	126751525	126752525	+	717.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-7601.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	9.72	15.21	18.5	10.12	6.06	21.7	7.39	7.52	16.24
Merged-chr3-90632170-1	chr3	90631670	90632670	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19276.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	4.58	4.15	3.7	5.4	0.93	4.82	13.73	5.31	7.49
Merged-chr9-120052415-1	chr9	120051915	120052915	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009987, intron 1 of 1)	intron (NM_009987, intron 1 of 1)	15881.0	NM_009987	13051.0	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	22.88	14.75	14.8	52.63	41.52	31.35	10.56	8.84	6.25
Merged-chr5-125341872-3	chr5	125341304	125342304	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205082)	promoter-TSS (NM_001205082)	-710.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	40.04	46.54	55.5	32.39	35.45	46.62	33.8	49.52	31.23
Merged-chr12-71342488-1	chr12	71341988	71342988	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32604.0	NM_001190466	59036.0	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	26.31	23.04	12.95	18.22	31.26	10.45	2.11	0.88	2.5
Merged-chr1-59593605-3	chr1	59593114	59594114	+	717.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	69320.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	17.73	18.89	14.8	13.49	20.06	14.47	21.12	18.57	15.61
Merged-chr5-62750596-1	chr5	62750096	62751096	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	MTA_Mm|LTR|ERVL-MaLR	15581.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	14.87	13.36	9.25	17.54	6.06	4.82	14.79	6.63	16.24
Merged-chr15-76766918-1	chr15	76766418	76767418	+	717.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-43073.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	32.61	28.57	30.52	32.39	37.32	30.54	11.62	18.13	11.24
Merged-chr14-15201176-1	chr14	15200676	15201676	+	717.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236447.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	3.43	3.69	11.1	1.35	5.6	0.0	7.39	3.54	9.99
Merged-chr6-47176212-3	chr6	47175710	47176710	+	717.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 20 of 23)	intron (NM_001004357, intron 20 of 23)	-68186.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	11.44	6.91	5.55	16.87	11.2	16.08	7.39	6.19	7.49
Merged-chr5-115060268-3	chr5	115059768	115060768	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	Lx5c|LINE|L1	47694.0	NM_001271591	100502825.0	Mm.361657	NM_001271590		Rpl37rt	EyeLinc4|Gm13826	ribosomal protein L37, retrotransposed	protein-coding	13.16	12.9	1.85	15.52	5.6	4.82	6.34	11.05	8.74
Merged-chr6-42296349-3	chr6	42295844	42296844	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9659.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	12.59	5.99	5.55	5.4	6.06	9.65	4.22	4.42	1.87
Merged-chr16-91512564-3	chr16	91512084	91513084	+	717.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14960.0	NR_105786	102465190.0		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	6.86	4.61	8.32	4.05	6.53	6.43	10.56	3.98	1.25
Merged-chr13-93248898-2	chr13	93248387	93249387	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54870.0	NM_147176	26556.0	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.29	3.69	3.7	10.12	3.73	4.02	6.34	3.1	5.62
Merged-chr7-98289745-2	chr7	98289248	98290248	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	B2_Mm2|SINE|B2	19794.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	16.59	10.14	5.55	18.22	5.13	8.84	12.67	2.65	6.25
Merged-chr16-92403202-1	chr16	92402702	92403702	+	717.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-3124.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	38.33	19.35	28.67	45.88	33.59	53.05	31.69	23.43	23.73
Merged-chr10-62502155-2	chr10	62501648	62502648	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B4|SINE|B4	5609.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	33.18	36.86	24.05	18.89	9.33	24.92	39.08	40.68	31.85
Merged-chr10-12867571-2	chr10	12867049	12868049	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5814.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	84.66	54.83	42.55	83.66	46.18	42.6	64.43	96.83	40.59
Merged-chr4-45494190-2	chr4	45493694	45494694	+	717.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	36634.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.29	6.45	3.7	12.82	3.27	15.27	8.45	6.63	2.5
Merged-chr15-73187069-2	chr15	73186561	73187561	+	717.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2114.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	4.58	5.53	1.85	6.75	2.8	4.02	4.22	1.33	0.62
Merged-chr11-102319510-3	chr11	102319029	102320029	+	717.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302954)	promoter-TSS (NM_001302954)	-433.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	45.19	41.01	68.45	36.43	33.59	48.23	61.26	43.77	44.34
Merged-chr11-119363776-2	chr11	119363263	119364263	+	717.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178743, intron 6 of 16)	intron (NM_178743, intron 6 of 16)	8206.0	NM_178743	268512.0	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	3.43	3.23	3.7	4.05	2.33	3.22	0.0	2.65	1.87
Merged-chr13-20209057-3	chr13	20208551	20209551	+	717.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 3 of 21)	intron (NM_080288, intron 3 of 21)	118544.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	35.47	45.62	23.12	41.83	44.78	38.58	46.47	48.2	21.23
Merged-chr2-43722875-3	chr2	43722374	43723374	+	717.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25950.0	NM_001301832	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	3.43	2.76	4.62	6.07	2.33	0.0	2.11	1.77	10.62
Merged-chr4-59236573-3	chr4	59236039	59237039	+	717.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23512.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	5.72	9.68	12.02	10.12	7.46	7.23	9.51	2.65	14.36
Merged-chr1-151564600-3	chr1	151564106	151565106	+	717.016663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6767.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	10.3	2.76	0.0	5.4	2.33	1.61	2.11	5.31	3.75
Merged-chr15-73755331-2	chr15	73754830	73755830	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001166389, exon 4 of 6)	exon (NM_001166389, exon 4 of 6)	7304.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	4.0	3.23	1.85	6.75	0.47	3.22	2.11	0.44	1.25
Merged-chr1-93727128-1	chr1	93726628	93727628	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025920, intron 2 of 5)	intron (NM_025920, intron 2 of 5)	4798.0	NM_001310761	67026.0	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	5.72	1.38	4.62	2.02	0.93	8.04	4.22	1.77	3.75
Merged-chr3-103605851-1	chr3	103605351	103606351	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276676, intron 3 of 6)	intron (NM_001276676, intron 3 of 6)	29725.0	NM_001276681	54524.0	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	6.29	4.61	3.7	4.05	4.67	1.61	5.28	5.31	8.74
Merged-chr9-109894949-1	chr9	109894449	109895449	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5306.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	10.87	1.38	5.55	3.37	1.87	12.06	2.11	3.1	6.25
Merged-chr7-29306857-1	chr7	29306357	29307357	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013874, intron 1 of 11)	intron (NM_013874, intron 1 of 11)	2852.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.57	1.38	0.92	0.67	0.93	0.0	3.17	2.21	11.24
Merged-chr8-105637941-1	chr8	105637441	105638441	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_151743)	promoter-TSS (NR_151743)	-467.0	NR_151742	546100.0	Mm.471801	NR_151742	ENSMUSG00000098120	Gm5914	-	predicted gene 5914	ncRNA	52.06	53.91	49.02	57.35	26.59	66.71	63.37	70.3	64.95
Merged-chr3-115687051-1	chr3	115686551	115687551	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28004.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.86	4.61	1.85	10.12	3.73	14.47	3.17	3.54	2.5
Merged-chr14-16559578-1	chr14	16559078	16560078	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	intron (NM_001289761, intron 2 of 8)	15898.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	4.0	4.15	5.55	2.02	0.93	3.22	1.06	3.98	1.87
Merged-chr13-49273010-1	chr13	49272510	49273510	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 14 of 17)	intron (NM_015759, intron 14 of 17)	-24304.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	24.6	24.42	35.15	39.13	28.46	38.58	35.91	23.43	28.73
Merged-chr6-106785467-1	chr6	106784967	106785967	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021449, intron 5 of 10)	intron (NM_021449, intron 5 of 10)	14620.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	9.15	12.9	5.55	6.75	6.53	12.06	16.9	12.82	6.25
Merged-chr13-114460776-1	chr13	114460276	114461276	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-1825.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	1.72	2.76	1.85	4.05	1.87	1.61	1.06	1.77	0.0
Merged-chr6-119499483-1	chr6	119498983	119499983	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	19815.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	2.29	2.3	10.17	2.02	3.73	4.02	4.22	1.77	1.87
Merged-chr11-97315259-1	chr11	97314759	97315759	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025927)	promoter-TSS (NM_025927)	-457.0	NM_025927	67036.0	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	44.05	70.96	31.45	86.36	152.55	89.22	79.21	91.97	32.48
Merged-chr9-9647881-1	chr9	9647381	9648381	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246550.0	NR_105745	102466147.0		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	2.86	5.07	1.85	4.05	4.67	11.25	6.34	3.98	9.37
Merged-chr7-116323775-1	chr7	116323275	116324275	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10415.0	NM_026533	68052.0	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	4.58	0.92	1.85	1.35	0.93	1.61	4.22	2.65	3.75
Merged-chr17-43050768-1	chr17	43050268	43051268	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	34213.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	16.02	11.98	7.4	13.49	11.66	27.33	6.34	1.33	1.25
Merged-chr18-62173412-1	chr18	62172912	62173912	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6569.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	54.35	37.32	33.3	31.71	23.33	41.8	27.46	28.74	25.61
Merged-chr7-114527969-2	chr7	114527470	114528470	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 12 of 15)	intron (NM_011055, intron 12 of 15)	35002.0	NR_110407	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	24.6	24.42	32.37	23.62	15.86	12.06	25.35	11.05	21.23
Merged-chr8-124347300-1	chr8	124346800	124347800	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	86636.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	3.43	0.0	3.7	2.02	0.47	3.22	3.17	1.77	5.0
Merged-chr3-96269132-3	chr3	96268642	96269642	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175666)	promoter-TSS (NM_175666)	488.0	NM_178215	319154.0	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	162.46	194.45	147.99	142.37	135.29	153.52	193.28	217.99	115.54
Merged-chr2-114199277-1	chr2	114198777	114199777	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175466, intron 1 of 1)	intron (NM_175466, intron 1 of 1)	2155.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	49.77	50.69	24.97	47.9	43.85	30.54	25.35	44.22	28.1
Merged-chr7-19342189-3	chr7	19341680	19342680	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2891.0	NM_001127324	13870.0	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	12.01	5.99	3.7	6.75	4.2	0.0	8.45	8.84	1.25
Merged-chr14-66232423-1	chr14	66231923	66232923	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-18599.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	97.25	81.1	61.05	85.01	47.12	58.68	94.0	71.63	68.07
Merged-chr1-21830066-1	chr1	21829566	21830566	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	131876.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	6.29	5.53	5.55	8.77	10.26	9.65	5.28	5.31	0.62
Merged-chr15-5236735-3	chr15	5236222	5237222	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	7465.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	10.87	20.27	5.55	9.45	15.86	8.04	22.18	18.57	9.99
Merged-chr8-77436379-2	chr8	77435841	77436841	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-80715.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	17.73	8.75	0.0	14.17	12.6	5.63	10.56	10.61	8.74
Merged-chr1-64697448-1	chr1	64696948	64697948	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097644, intron 1 of 9)	intron (NM_001097644, intron 1 of 9)	6103.0	NM_001097644	227210.0	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	5.15	3.69	8.32	7.42	7.46	1.61	4.22	7.07	7.49
Merged-chr15-31586657-2	chr15	31586161	31587161	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181588, intron 4 of 5)	intron (NM_181588, intron 4 of 5)	14878.0	NM_001348035	12465.0	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	3.43	5.53	0.0	2.7	2.8	6.43	2.11	0.88	5.0
Merged-chr5-36748181-1	chr5	36747681	36748681	+	717.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_133724, exon 1 of 1)	exon (NM_133724, exon 1 of 1)	498.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	131.0	103.22	136.89	98.51	101.7	123.78	117.24	87.11	73.69
Merged-chr1-162612756-1	chr1	162612256	162613256	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26394.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	4.58	4.15	0.0	5.4	4.2	1.61	2.11	1.33	10.62
Merged-chr10-14134124-1	chr10	14133624	14134624	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358782, intron 6 of 9)	intron (NM_001358782, intron 6 of 9)	167745.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	8.01	8.75	12.02	10.12	6.06	3.22	3.17	5.31	3.75
Merged-chr3-53029326-1	chr3	53028826	53029826	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12103.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	3.43	5.07	0.0	2.02	6.06	0.0	3.17	0.88	6.25
Merged-chr16-49016844-1	chr16	49016344	49017344	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172616, intron 19 of 20)	intron (NM_172616, intron 19 of 20)	22656.0	NM_172616	224171.0	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	3.43	0.92	3.7	3.37	2.8	2.41	3.17	3.98	2.5
Merged-chr6-46142295-1	chr6	46141795	46142795	+	717.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	ID_B1|SINE|B4	1082234.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.72	9.68	7.4	5.4	2.8	0.0	3.17	4.86	5.0
Merged-chr5-59853124-1	chr5	59852624	59853624	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13C2|LTR|ERVK	132878.0	NR_040683	71057.0	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	2.86	5.07	4.62	4.72	3.27	5.63	5.28	6.63	4.37
Merged-chr11-115003435-1	chr11	115002935	115003935	+	717.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1555.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	33.75	42.85	52.72	84.34	90.97	116.55	111.96	162.72	75.57
Merged-chr14-63144341-3	chr14	63143894	63144894	+	716.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010191)	TTS (NM_010191)	21932.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	28.6	31.33	23.12	35.09	24.72	25.72	24.29	17.24	18.74
Merged-chr10-18188709-2	chr10	18188198	18189198	+	716.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 3 of 20)	L1MC5|LINE|L1	22192.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	16.59	9.68	9.25	14.84	14.0	6.43	12.67	18.57	20.61
Merged-chr7-45105660-2	chr7	45105156	45106156	+	716.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1834.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	33.75	25.34	10.17	19.57	25.66	18.49	16.9	12.38	11.24
Merged-chr19-8018824-2	chr19	8018330	8019330	+	716.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-52803.0	NM_001361980	171405.0	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	OAT6-L|OAT6-S|Oat9	solute carrier family 22, member 27	protein-coding	1.72	2.76	9.25	11.47	9.33	14.47	12.67	11.05	6.25
Merged-chr8-33618036-2	chr8	33617546	33618546	+	716.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017374, intron 6 of 6)	B3|SINE|B2	18425.0	NM_017374	19053.0	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	5.15	11.98	6.47	16.87	6.53	6.43	31.69	24.76	9.37
Merged-chr10-82863381-3	chr10	82862828	82863828	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042513, intron 2 of 14)	intron (NM_001042513, intron 2 of 14)	2987.0	NM_001042514	50493.0	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	17.16	6.45	9.25	12.82	5.13	3.22	15.84	12.82	7.49
Merged-chr17-35814828-3	chr17	35814325	35815325	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6888.0	NM_133662	15937.0	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	32.04	23.04	25.9	28.34	20.99	46.62	28.52	44.22	28.73
Merged-chr9-64784979-3	chr9	64784445	64785445	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26066.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.86	6.91	0.0	15.52	5.6	4.82	9.51	5.31	6.25
Merged-chr3-65549929-3	chr3	65549408	65550408	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178892, intron 4 of 5)	intron (NM_178892, intron 4 of 5)	-20494.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	18.31	23.5	21.27	18.89	30.32	30.54	38.02	31.84	26.23
Merged-chr17-86301344-3	chr17	86300823	86301823	+	716.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-14145.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	22.31	16.13	5.55	38.46	33.12	32.15	22.18	18.57	10.62
Merged-chrX-133947566-3	chrX	133947047	133948047	+	716.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001290719, exon 13 of 13)	3' UTR (NM_001290719, exon 13 of 13)	34265.0	NM_001290718	27359.0	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	3.43	3.23	2.77	3.37	1.4	3.22	0.0	1.33	0.0
Merged-chr18-74882571-2	chr18	74882069	74883069	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78694.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	4.58	3.23	1.85	4.05	2.8	1.61	4.22	1.77	5.0
Merged-chr14-121937835-2	chr14	121937354	121938354	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-22080.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	84.09	94.0	43.47	87.04	51.32	39.39	64.43	49.52	58.08
Merged-chr18-4369317-2	chr18	4368830	4369830	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040328)	TTS (NR_040328)	-6262.0	NM_001361008	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	12.01	18.43	12.02	14.84	14.0	11.25	16.9	12.38	11.24
Merged-chr1-172306378-2	chr1	172305883	172306883	+	716.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5984.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	22.88	9.68	3.7	18.22	11.66	9.65	13.73	2.65	2.5
Merged-chr19-17131310-2	chr19	17130810	17131810	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	175192.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	13.16	11.52	24.05	12.82	12.6	20.9	15.84	7.52	14.99
Merged-chr10-125213239-2	chr10	125212743	125213743	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95573.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	13.73	11.52	13.87	12.82	9.33	9.65	16.9	6.19	16.24
Merged-chr4-145026793-2	chr4	145026287	145027287	+	716.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 65 of 69)	intron (NM_001276465, intron 65 of 69)	133650.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	52.06	64.51	49.95	48.58	60.18	42.6	30.63	26.97	23.73
Merged-chr2-26130195-3	chr2	26129714	26130714	+	716.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	AmnSINE1|SINE|Deu	-7403.0	NM_026495	67991.0	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	33.18	22.58	28.67	13.49	6.53	20.09	25.35	18.13	7.49
Merged-chr3-138742255-2	chr3	138741744	138742744	+	716.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019571)	promoter-TSS (NM_019571)	36.0	NM_019571	56224.0	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	1.72	1.38	3.7	5.4	0.0	1.61	4.22	0.0	0.0
Merged-chr11-68472644-3	chr11	68472141	68473141	+	716.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	-30378.0	NM_001004435	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	18.31	14.75	13.87	20.92	10.73	11.25	13.73	8.4	11.87
Merged-chr4-135242565-3	chr4	135242060	135243060	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	ORR1F|LTR|ERVL-MaLR	30200.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	49.2	32.25	36.07	40.48	27.06	52.25	28.52	30.51	16.24
Merged-chr8-106697188-1	chr8	106696688	106697688	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 5 of 17)	MTD|LTR|ERVL-MaLR	14120.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	4.58	5.53	5.55	8.77	5.6	3.22	4.22	5.75	8.74
Merged-chr9-22368440-1	chr9	22367940	22368940	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028390, exon 8 of 24)	exon (NM_028390, exon 8 of 24)	20766.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	30.89	59.44	40.7	39.13	39.19	45.01	59.15	54.39	43.72
Merged-chr1-184025394-1	chr1	184024894	184025894	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8604.0	NM_028516	73363.0	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	17.16	17.97	7.4	16.19	9.33	5.63	12.67	10.17	20.61
Merged-chr2-78059924-1	chr2	78059424	78060424	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_108098, intron 1 of 6)	intron (NR_108098, intron 1 of 6)	8747.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.58	9.22	3.7	9.45	9.8	10.45	6.34	8.84	5.62
Merged-chr17-34887700-3	chr17	34887226	34888226	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	-5626.0	NM_013484	12263.0	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	13.16	9.22	0.92	6.07	6.06	8.04	15.84	12.38	14.36
Merged-chr9-86016666-1	chr9	86016166	86017166	+	716.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173814.0	NM_001164792	21983.0	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	1.72	2.76	0.0	4.72	7.93	1.61	0.0	2.21	1.25
Merged-chr3-95296258-3	chr3	95295758	95296758	+	716.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_199475)	TTS (NM_199475)	10546.0	NM_001085383	71790.0	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	14.3	10.6	11.1	10.12	9.33	10.45	10.56	9.73	7.49
Merged-chrX-60000011-2	chrX	59999593	60000593	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305797, intron 1 of 6)	intron (NM_001305797, intron 1 of 6)	629.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	21.74	35.02	14.8	32.39	34.06	29.74	54.92	55.71	23.73
Merged-chr2-11279012-2	chr2	11278545	11279545	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 13 of 17)	intron (NM_008859, intron 13 of 17)	-60444.0	NR_040369	100503147.0	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	-	predicted gene 13293	ncRNA	33.75	33.64	20.35	43.18	46.65	30.54	62.31	55.27	19.98
Merged-chr5-21091410-2	chr5	21090910	21091910	+	716.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35499.0	NM_011203	19248.0	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	4.58	2.3	3.7	2.7	3.73	4.82	3.17	2.21	1.25
Merged-chr14-76193402-3	chr14	76192930	76193930	+	716.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58032.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	14.3	11.52	13.87	14.84	3.73	8.04	6.34	6.63	2.5
Merged-chr13-59728578-3	chr13	59728077	59729077	+	716.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177711, exon 4 of 4)	exon (NM_177711, exon 4 of 4)	3175.0	NM_177711	238663.0	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	2.86	0.92	0.0	4.72	1.87	1.61	1.06	0.44	1.25
Merged-chr2-148520925-3	chr2	148520421	148521421	+	716.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77386.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	15.45	17.51	5.55	21.59	18.19	12.86	21.12	9.73	14.36
Merged-chr3-55103714-2	chr3	55103215	55104215	+	716.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-8393.0	NM_001144988	229285.0	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|Spart|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	5.15	1.38	0.92	2.02	3.73	1.61	3.17	1.77	1.25
Merged-chr4-46487512-2	chr4	46486997	46487997	+	716.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NM_053179	94181.0	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	12.59	14.75	12.95	16.87	11.66	20.9	9.51	9.29	13.74
Merged-chr3-96636739-3	chr3	96636237	96637237	+	716.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162387, exon 2 of 5)	exon (NM_001162387, exon 2 of 5)	890.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	25.17	23.04	31.45	25.64	19.59	23.31	44.36	46.43	21.23
Merged-chr11-121340521-3	chr11	121340020	121341020	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13927.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	31.46	32.25	36.07	30.36	26.12	40.19	30.63	25.2	29.98
Merged-chr4-148165107-3	chr4	148164588	148165588	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176848, exon 4 of 6)	exon (NM_176848, exon 4 of 6)	4420.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	5.72	3.23	0.0	0.0	1.4	3.22	5.28	0.44	2.5
Merged-chr6-24515047-3	chr6	24514514	24515514	+	716.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172535)	promoter-TSS (NM_172535)	53.0	NM_172535	214704.0	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	5.72	4.61	5.55	5.4	2.33	1.61	3.17	4.86	2.5
Merged-chr9-32650992-1	chr9	32650492	32651492	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45050.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	5.72	3.23	3.7	6.75	6.06	3.22	8.45	1.33	6.87
Merged-chrX-20117913-2	chrX	20117400	20118400	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177353, intron 15 of 16)	intron (NM_177353, intron 15 of 16)	58330.0	NM_021715	60322.0	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	2.29	3.69	1.85	4.05	2.8	1.61	5.28	2.21	0.62
Merged-chr9-100377859-2	chr9	100377354	100378354	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108619.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.58	3.69	10.17	8.77	1.4	12.06	0.0	0.44	1.25
Merged-chr8-104321927-1	chr8	104321427	104322427	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028524)	promoter-TSS (NM_028524)	-300.0	NM_028524	75502.0	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	4.0	2.3	9.25	6.75	4.2	0.8	3.17	0.88	5.0
Merged-chr11-60802266-2	chr11	60801762	60802762	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	PB1D10|SINE|Alu	9003.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	29.17	25.34	30.52	22.27	7.46	24.11	13.73	20.34	12.49
Merged-chr9-53356966-1	chr9	53356466	53357466	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176846, intron 4 of 5)	intron (NM_176846, intron 4 of 5)	-27057.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	18.31	6.45	5.55	12.14	7.93	4.02	21.12	12.82	2.5
Merged-chr11-115172972-2	chr11	115172476	115173476	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012030, intron 1 of 5)	intron (NM_012030, intron 1 of 5)	9635.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	18.31	17.05	5.55	33.74	21.93	8.04	29.57	19.46	3.75
Merged-chr9-104079581-2	chr9	104079082	104080082	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175324, intron 5 of 19)	B3|SINE|B2	15879.0	NM_175324	102632.0	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	5.72	2.76	1.85	2.7	1.87	0.0	4.22	0.0	0.0
Merged-chr2-119271200-2	chr2	119270677	119271677	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145530)	promoter-TSS (NM_145530)	49.0	NM_145530	228543.0	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	4.0	2.76	5.55	0.67	0.47	3.22	3.17	0.44	0.62
Merged-chr13-41461752-2	chr13	41461250	41462250	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	25610.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	30.89	59.44	50.87	41.16	45.72	76.36	32.74	36.26	41.22
Merged-chr2-164910804-2	chr2	164910323	164911323	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_199027, exon 2 of 28)	5' UTR (NM_199027, exon 2 of 28)	927.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	120.7	111.05	63.82	95.81	80.24	61.09	113.01	122.92	55.58
Merged-chr8-117537087-3	chr8	117536600	117537600	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	B4A|SINE|B4	38825.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.72	5.99	12.95	6.07	6.06	10.45	5.28	0.88	8.74
Merged-chr1-132011935-3	chr1	132011453	132012453	+	716.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007923, intron 1 of 4)	L1MB8|LINE|L1	4348.0	NM_007923	13714.0	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	41.19	55.29	22.2	31.04	29.39	20.9	49.64	54.83	24.98
Merged-chr15-101264593-1	chr15	101264093	101265093	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2253.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	5.15	16.13	18.5	9.45	7.46	18.49	19.01	13.71	32.48
Merged-chr3-123332538-1	chr3	123332038	123333038	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027135, intron 10 of 22)	intron (NM_027135, intron 10 of 22)	53452.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	22.31	17.97	21.27	13.49	34.99	37.78	53.87	84.45	37.47
Merged-chr14-17433127-2	chr14	17432614	17433614	+	716.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-227846.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	15.45	18.43	17.57	12.82	10.73	24.11	16.9	8.84	19.98
Merged-chr1-171064629-3	chr1	171064142	171065142	+	716.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106103)	promoter-TSS (NR_106103)	10.0	NR_106103	102466998.0		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	7.44	7.83	7.4	8.1	4.2	5.63	15.84	13.27	2.5
Merged-chr11-44617202-3	chr11	44616674	44617674	+	716.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007897)	promoter-TSS (NM_007897)	-926.0	NM_001290711	13591.0	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	3.43	0.0	0.0	4.72	2.8	0.0	2.11	0.0	5.0
Merged-chr16-32666429-2	chr16	32665933	32666933	+	716.43335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033493, exon 2 of 3)	non-coding (NR_033493, exon 2 of 3)	1764.0	NR_033493	675921.0	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	5.15	3.23	4.62	5.4	1.4	8.84	10.56	11.05	7.49
Merged-chr1-180794339-3	chr1	180793894	180794894	+	716.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	19211.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	6.86	6.45	5.55	16.87	6.53	4.82	6.34	9.29	11.24
Merged-chr10-75298758-3	chr10	75298241	75299241	+	716.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-18136.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	13.16	11.52	16.65	22.94	14.46	14.47	23.24	17.24	13.12
Merged-chr14-78725190-2	chr14	78724743	78725743	+	716.366699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 1 of 29)	CpG-4677	7486.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	9.72	3.69	1.85	7.42	5.13	8.04	2.11	2.21	7.49
Merged-chr18-84089278-6	chr18	84088724	84089724	+	716.347229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146090, intron 1 of 1)	intron (NM_146090, intron 1 of 1)	1066.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	21.74	21.2	31.45	33.74	16.79	44.21	44.36	40.24	24.98
Merged-chrX-98969820-2	chrX	98969332	98970332	+	716.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32051.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	8.58	7.37	9.25	5.4	4.67	1.61	4.22	3.54	9.99
Merged-chr7-92965295-2	chr7	92964797	92965797	+	716.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90044.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	4.58	5.99	0.0	0.67	3.27	6.43	1.06	1.77	7.49
Merged-chr2-137116116-1	chr2	137115616	137116616	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013822, intron 1 of 25)	CpG-8595	404.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	4.0	1.84	7.4	6.75	2.8	4.82	2.11	2.65	6.25
Merged-chr16-14123407-1	chr16	14122907	14123907	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 21 of 26)	intron (NM_001081154, intron 21 of 26)	35867.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	18.88	34.1	44.4	32.39	17.73	39.39	23.24	21.67	29.98
Merged-chr9-20961681-3	chr9	20961190	20962190	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1802.0	NM_001199432	13433.0	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	8.58	15.67	12.02	24.96	24.72	24.92	13.73	8.84	9.37
Merged-chr3-41522950-3	chr3	41522447	41523447	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_130791, exon 2 of 6)	non-coding (NR_130791, exon 2 of 6)	5527.0	NR_130791	78648.0	Mm.366093	NR_130791		2400006E01Rik	Gm43733|lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	5.15	6.45	5.55	24.29	12.13	11.25	11.62	4.86	6.25
Merged-chr3-104758631-2	chr3	104758125	104759125	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	18922.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.57	0.92	0.92	4.72	0.47	8.04	0.0	2.65	0.0
Merged-chr2-181411276-3	chr2	181410775	181411775	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13113.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	9.72	6.91	11.1	14.17	14.46	21.7	17.96	14.59	13.12
Merged-chr1-46066828-3	chr1	46066319	46067319	+	716.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001160386)	promoter-TSS (NM_001160386)	81.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	7.44	2.3	1.85	7.42	4.2	4.82	2.11	2.65	1.87
Merged-chr9-78553133-1	chr9	78552633	78553633	+	716.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172773, intron 8 of 10)	intron (NM_172773, intron 8 of 10)	34912.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	9.72	3.69	5.55	3.37	3.73	2.41	3.17	1.33	3.12
Merged-chr7-45682904-3	chr7	45682414	45683414	+	716.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271578, intron 3 of 3)	intron (NM_001271578, intron 3 of 3)	-1108.0	NM_001358870	243967.0	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	9.72	7.37	3.7	4.72	5.13	12.86	12.67	6.63	9.99
Merged-chr8-3387485-3	chr8	3386990	3387990	+	716.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033378, intron 7 of 10)	intron (NM_001033378, intron 7 of 10)	-5518.0	NM_133962	102098.0	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	5.72	0.0	1.85	2.02	2.8	1.61	1.06	0.0	0.0
Merged-chr7-30761982-2	chr7	30761485	30762485	+	716.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1771.0	NM_001166173	73712.0	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	5.72	5.99	1.85	4.72	1.87	6.43	4.22	3.1	3.75
Merged-chr11-9347898-2	chr11	9347428	9348428	+	716.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 28 of 61)	MIRb|SINE|MIR	155986.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.15	3.23	4.62	4.72	3.27	1.61	8.45	2.65	6.25
Merged-chr2-172397669-2	chr2	172397182	172398182	+	716.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	L1_Mus2|LINE|L1	3888.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	25.17	18.89	9.25	31.04	20.53	19.29	36.97	30.95	18.74
Merged-chr3-79814004-3	chr3	79813533	79814533	+	716.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027495, exon 12 of 12)	3' UTR (NM_027495, exon 12 of 12)	28629.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	2.29	0.92	1.85	2.02	1.87	4.82	1.06	2.21	0.0
Merged-chr16-91864344-3	chr16	91863824	91864824	+	716.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	67306.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	46.91	61.75	63.82	76.24	50.85	80.38	90.83	83.13	58.71
Merged-chr13-37557905-3	chr13	37557406	37558406	+	716.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	212561.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	5.07	0.0	4.05	2.33	11.25	5.28	2.65	1.25
Merged-chr6-113061379-2	chr6	113060887	113061887	+	716.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	15085.0	NM_008188	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	55.49	64.05	25.9	49.25	49.45	43.4	65.48	64.11	55.58
Merged-chr2-144237513-3	chr2	144237065	144238065	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mm|SINE|Alu	28637.0	NR_030762	100313519.0	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	9.15	9.68	10.17	4.72	2.8	10.45	7.39	5.31	5.0
Merged-chr7-100853531-3	chr7	100853019	100854019	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	9894.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	23.45	16.13	16.65	21.59	18.66	8.04	13.73	16.8	5.0
Merged-chr5-33003759-3	chr5	33003266	33004266	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15050.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	9.72	11.06	7.4	8.1	10.73	4.02	7.39	4.42	2.5
Merged-chr7-67973666-3	chr7	67973175	67974175	+	716.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 1 of 20)	intron (NM_010513, intron 1 of 20)	21418.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	42.9	38.71	14.8	47.23	39.65	46.62	13.73	14.15	9.99
Merged-chr4-35065700-2	chr4	35065180	35066180	+	716.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-86375.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	13.16	12.44	18.5	6.75	6.06	8.04	0.0	7.07	9.37
Merged-chr13-52258607-2	chr13	52258100	52259100	+	716.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	161859.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.43	9.22	20.35	2.7	6.53	8.84	8.45	5.31	11.24
Merged-chr1-16093209-2	chr1	16092697	16093697	+	716.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001243238, exon 1 of 5)	5' UTR (NM_001243238, exon 1 of 5)	128.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	1.14	1.38	0.0	1.35	2.33	0.0	3.17	1.77	1.25
Merged-chr16-16912085-3	chr16	16911594	16912594	+	716.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176833, intron 3 of 7)	intron (NM_176833, intron 3 of 7)	15625.0	NM_176833	68606.0	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	4.58	5.07	1.85	3.37	6.06	3.22	8.45	2.65	4.37
Merged-chr5-8660408-4	chr5	8659931	8660931	+	716.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011076, intron 3 of 29)	CpG	-37479.0	NM_198620	242819.0	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	9.72	1.84	1.85	8.77	4.67	13.66	6.34	6.19	11.24
Merged-chr16-4909335-3	chr16	4908809	4909809	+	716.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357062, intron 2 of 17)	intron (NM_001357062, intron 2 of 17)	23209.0	NM_001357061	17237.0	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	25.74	42.39	54.57	32.39	36.39	47.42	55.98	53.5	42.47
Merged-chr17-84187203-3	chr17	84186703	84187703	+	716.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001806, intron 1 of 1)	CpG	744.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	52.06	68.2	55.5	74.22	84.44	106.1	79.21	87.99	74.94
Merged-chr3-84129406-3	chr3	84128931	84129931	+	716.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029797, intron 4 of 7)	intron (NM_029797, intron 4 of 7)	26355.0	NM_029797	76915.0	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	4.0	5.07	3.7	7.42	9.8	14.47	8.45	5.75	9.99
Merged-chr16-87755091-3	chr16	87754568	87755568	+	716.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56114.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	8.58	1.84	2.77	4.72	0.47	2.41	5.28	2.65	1.25
Merged-chr16-23337491-3	chr16	23337000	23338000	+	716.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	intron (NM_001252505, intron 5 of 7)	47030.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	18.31	17.51	16.65	18.89	9.33	16.08	17.96	18.13	9.37
Merged-chrX-163261458-3	chrX	163260945	163261945	+	716.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 5)	intron (NR_038088, intron 1 of 5)	91119.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	2.86	5.99	1.85	2.02	4.2	0.8	2.11	8.4	3.75
Merged-chr10-42962902-1	chr10	42962402	42963402	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	28260.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	10.3	8.29	9.25	8.77	10.26	8.84	10.56	7.96	8.74
Merged-chr6-134261585-1	chr6	134261085	134262085	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-134744.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	92.1	86.17	82.32	91.09	60.65	89.22	59.15	51.29	51.21
Merged-chr17-34129140-1	chr17	34128640	34129640	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 1 of 5)	intron (NM_001360530, intron 1 of 5)	3622.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	7.44	5.07	3.7	5.4	2.33	6.43	9.51	2.21	3.12
Merged-chr19-18548709-1	chr19	18548209	18549209	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83104.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	3.43	2.3	0.0	4.05	0.0	1.61	1.06	1.33	2.5
Merged-chr12-72407074-1	chr12	72406574	72407574	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	1980.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	4.0	3.23	7.4	3.37	1.87	3.22	15.84	19.01	13.12
Merged-chr8-88619378-1	chr8	88618878	88619878	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16750.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	6.86	2.76	1.85	0.67	2.8	6.43	4.22	2.21	2.5
Merged-chr4-28949299-1	chr4	28948799	28949799	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010141, intron 11 of 16)	intron (NM_010141, intron 11 of 16)	-118780.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	2.86	5.53	1.85	7.42	2.8	0.8	9.51	10.17	5.62
Merged-chr17-57332480-2	chr17	57331972	57332972	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26214.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	4.58	8.29	5.55	4.72	0.47	1.61	5.28	7.07	3.12
Merged-chr9-13430469-1	chr9	13429969	13430969	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028271)	promoter-TSS (NR_028271)	-892.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	8.01	3.69	1.85	5.4	4.2	3.22	5.28	0.88	3.75
Merged-chr16-34114856-3	chr16	34114364	34115364	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-147826.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.43	2.76	0.0	5.4	2.8	3.22	2.11	3.98	2.5
Merged-chr9-108309028-1	chr9	108308528	108309528	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313961, intron 1 of 5)	intron (NM_001313961, intron 1 of 5)	2231.0	NM_001313962	11848.0	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	29.75	38.71	19.42	35.76	22.86	34.56	45.42	44.22	46.84
Merged-chr18-65674714-1	chr18	65674214	65675214	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361052, intron 6 of 8)	intron (NM_001361052, intron 6 of 8)	-23554.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	16.02	14.75	12.95	10.12	4.2	11.25	5.28	4.86	7.49
Merged-chr18-3282457-1	chr18	3281957	3282957	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110855)	promoter-TSS (NM_001110855)	-710.0	NM_001110855	12916.0	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	36.61	39.17	24.05	35.09	27.52	59.48	52.81	40.68	32.48
Merged-chr14-26641382-1	chr14	26640882	26641882	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B2_Mm2|SINE|B2	3248.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	34.32	29.03	10.17	21.59	23.79	24.11	29.57	18.57	13.74
Merged-chr15-66730228-1	chr15	66729728	66730728	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009375, intron 27 of 47)	MLT1H|LTR|ERVL-MaLR	59458.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	16.59	23.04	21.27	14.84	20.06	34.56	19.01	11.94	16.24
Merged-chr1-9549400-1	chr1	9548900	9549900	+	716.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357377, intron 2 of 14)	intron (NM_001357377, intron 2 of 14)	1452.0	NM_001357376	76187.0	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8|HOT	alcohol dehydrogenase, iron containing, 1	protein-coding	24.03	17.51	11.1	8.1	20.06	16.88	10.56	13.71	2.5
Merged-chr9-58554583-1	chr9	58554083	58555083	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13643.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.58	3.23	1.85	16.19	16.79	8.04	4.22	9.29	3.75
Merged-chr6-146405570-1	chr6	146405070	146406070	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 10 of 56)	intron (NM_019923, intron 10 of 56)	96653.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.58	3.23	2.77	6.07	1.4	1.61	0.0	0.88	5.0
Merged-chr4-19853912-1	chr4	19853412	19854412	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35185.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	10.3	9.68	5.55	24.96	17.26	24.92	11.62	12.38	7.49
Merged-chr11-4988263-1	chr11	4987763	4988763	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	1439.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	30.32	46.08	29.6	28.34	30.79	32.15	29.57	25.65	24.36
Merged-chr7-67225087-2	chr7	67224574	67225574	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357962)	TTS (NM_001357962)	2458.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	10.3	12.9	12.95	15.52	8.86	16.08	9.51	11.5	6.25
Merged-chrX-166661032-2	chrX	166660549	166661549	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-976.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	58.35	75.11	47.17	76.92	58.78	64.3	60.2	90.2	46.84
Merged-chr12-17267690-1	chr12	17267190	17268190	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027959, intron 1 of 12)	intron (NM_027959, intron 1 of 12)	1095.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	13.16	22.58	11.1	15.52	10.26	22.51	12.67	16.36	10.62
Merged-chr2-3425097-1	chr2	3424597	3425597	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302684, intron 1 of 14)	intron (NM_001302684, intron 1 of 14)	966.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	145.3	97.23	69.37	116.05	77.91	73.95	130.97	120.27	60.58
Merged-chr14-30616964-2	chr14	30616465	30617465	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-6655.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	8.58	14.75	12.02	14.84	11.66	24.11	25.35	20.34	34.35
Merged-chr12-16145809-1	chr12	16145309	16146309	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-329024.0	NM_144551	217410.0	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	3.43	0.92	5.55	2.7	0.47	3.22	2.11	0.88	2.5
Merged-chr1-54666160-1	chr1	54665660	54666660	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 18 of 27)	intron (NM_001081433, intron 18 of 27)	-108476.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	2.29	3.23	7.4	4.05	3.27	3.22	2.11	0.0	3.75
Merged-chr17-64945844-3	chr17	64945329	64946329	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109758.0	NM_030031	78057.0	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	1.72	3.23	3.7	5.4	3.27	12.06	2.11	3.98	1.25
Merged-chr3-22111571-1	chr3	22111071	22112071	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	34919.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.44	6.91	4.62	6.75	0.93	0.0	2.11	2.65	1.25
Merged-chr2-129145139-2	chr2	129144644	129145644	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15444.0	NM_025395	66170.0	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	5.15	2.3	6.47	1.35	4.67	6.43	2.11	2.65	3.75
Merged-chr6-73587150-1	chr6	73586650	73587650	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-116129.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	4.0	1.38	5.55	4.05	2.8	0.8	2.11	5.31	5.0
Merged-chr7-132805046-1	chr7	132804546	132805546	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	8150.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	48.05	28.11	46.25	50.6	38.25	51.44	33.8	28.3	23.11
Merged-chrX-37167277-2	chrX	37166777	37167777	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033785, intron 1 of 5)	intron (NM_001033785, intron 1 of 5)	1565.0	NM_001033785	434756.0	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	2.86	1.38	0.0	2.02	1.4	0.0	2.11	2.21	2.5
Merged-chr4-134372527-3	chr4	134371966	134372966	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019578)	promoter-TSS (NM_019578)	81.0	NM_001355493	56219.0	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	4.0	1.38	3.7	4.05	0.0	1.61	3.17	3.1	1.25
Merged-chr5-20840037-1	chr5	20839537	20840537	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 2 of 17)	intron (NM_172992, intron 2 of 17)	42087.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	10.87	14.28	0.92	11.47	11.2	6.43	5.28	8.4	12.49
Merged-chr10-22300972-1	chr10	22300472	22301472	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	MTC-int|LTR|ERVL-MaLR	-5748.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	50.34	50.23	26.82	40.48	41.99	39.39	26.4	19.01	21.86
Merged-chr17-8905114-1	chr17	8904614	8905614	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 2 of 21)	intron (NM_001347321, intron 2 of 21)	55129.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	9.15	9.22	16.65	14.17	12.13	8.04	5.28	2.65	7.49
Merged-chr4-3729845-1	chr4	3729345	3730345	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	14881.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	27.46	41.47	39.77	39.81	28.92	36.97	49.64	64.56	53.71
Merged-chr1-106620317-2	chr1	106619818	106620818	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-73687.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	1.14	4.15	5.55	4.05	2.8	1.61	4.22	0.88	3.75
Merged-chr11-110584435-1	chr11	110583935	110584935	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	105095.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.57	1.84	4.62	4.05	2.33	1.61	2.11	0.0	2.5
Merged-chr10-120587397-1	chr10	120586897	120587897	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-110928.0	NM_010441	15364.0	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	4.58	3.69	0.92	2.7	1.4	3.22	3.17	2.65	3.12
Merged-chr8-85077197-3	chr8	85076695	85077695	+	716.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026399, intron 5 of 8)	intron (NM_026399, intron 5 of 8)	3551.0	NM_026399	67836.0	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	8.58	5.99	1.85	4.72	2.8	6.43	12.67	6.19	9.99
Merged-chr13-33072256-1	chr13	33071756	33072756	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11847.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	6.86	3.23	1.85	2.7	3.27	1.61	6.34	3.1	4.37
Merged-chr6-3590563-1	chr6	3590063	3591063	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167751, intron 22 of 26)	ORR1C2|LTR|ERVL-MaLR	92170.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	2.86	3.23	0.0	7.42	7.46	2.41	3.17	5.75	6.25
Merged-chr14-25628676-1	chr14	25628176	25629176	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	25163.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	18.88	5.07	11.1	7.42	2.33	22.51	7.39	4.86	3.75
Merged-chr2-36009544-1	chr2	36009044	36010044	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29920.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	3.43	1.84	8.32	2.02	1.4	3.22	3.17	0.88	0.0
Merged-chr1-165689996-1	chr1	165689496	165690496	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	18098.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	11.44	5.99	3.7	14.84	8.4	21.7	16.9	8.4	11.24
Merged-chr11-79622805-1	chr11	79622305	79623305	+	716.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175543, intron 3 of 14)	intron (NM_175543, intron 3 of 14)	358.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	266.58	197.22	75.85	330.61	263.58	122.98	254.54	274.59	86.18
Merged-chr5-64341184-2	chr5	64340694	64341694	+	715.974976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289514, intron 17 of 18)	MLT2B3|LTR|ERVL	110837.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	38.9	39.63	31.45	35.09	26.59	55.46	53.87	72.96	66.82
Merged-chr12-73594654-3	chr12	73594153	73595153	+	715.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313977, intron 2 of 14)	intron (NM_001313977, intron 2 of 14)	9857.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	13.16	10.14	1.85	10.12	7.0	1.61	7.39	3.1	9.99
Merged-chr13-58074995-3	chr13	58074510	58075510	+	715.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 5 of 16)	L1M2|LINE|L1	27418.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	6.29	12.9	3.7	21.59	19.13	10.45	9.51	3.98	9.99
Merged-chr12-3426123-2	chr12	3425594	3426594	+	715.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172421)	promoter-TSS (NM_172421)	653.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	85.81	131.32	120.24	105.93	143.68	103.69	136.25	168.02	71.82
Merged-chr8-111090310-2	chr8	111089828	111090828	+	715.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4417.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	3.43	4.15	3.7	6.75	4.67	2.41	2.11	1.33	1.25
Merged-chr2-129622107-3	chr2	129621609	129622609	+	715.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355158, intron 7 of 8)	intron (NM_001355158, intron 7 of 8)	26647.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	34.32	23.96	34.22	19.57	9.8	25.72	29.57	23.43	17.49
Merged-chr2-14187086-3	chr2	14186565	14187565	+	715.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	MLT1C-int|LTR|ERVL-MaLR	12541.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	10.87	17.05	5.55	20.24	13.06	12.06	16.9	6.19	9.99
Merged-chr19-6924687-3	chr19	6924199	6925199	+	715.866699	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008431)	TTS (NM_008431)	681.0	NM_001039494	67077.0	Mm.251306	NM_001039494	ENSMUSG00000050623	Catsperz	1700019N12Rik|A430107B04Rik|MLZ-622|Tex40	cation channel sperm associated auxiliary subunit zeta	protein-coding	6.29	2.76	3.7	10.8	4.67	3.22	2.11	7.07	1.87
Merged-chr6-136468552-2	chr6	136468051	136469051	+	715.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50300.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.58	2.3	7.4	14.17	9.33	11.25	9.51	12.82	3.12
Merged-chr8-122315685-2	chr8	122315193	122316193	+	715.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	33552.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	8.58	8.75	13.87	11.47	8.86	11.25	19.01	7.52	9.99
Merged-chr5-105395363-3	chr5	105394854	105395854	+	715.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20421.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	5.72	2.3	0.0	4.05	2.33	0.0	2.11	3.98	5.0
Merged-chr2-173000967-3	chr2	173000458	173001458	+	715.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175112, intron 1 of 11)	intron (NM_175112, intron 1 of 11)	841.0	NM_175112	66679.0	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	61.78	58.98	48.1	70.85	66.24	33.76	63.37	62.35	32.48
Merged-chr17-73416533-3	chr17	73416037	73417037	+	715.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-17241.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	7.44	5.53	1.85	10.12	3.73	3.22	4.22	0.0	3.75
Merged-chr18-67308451-2	chr18	67307964	67308964	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 3 of 7)	intron (NM_053261, intron 3 of 7)	19241.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	5.15	4.61	0.92	7.42	4.2	1.61	7.39	5.31	5.62
Merged-chr18-7625275-2	chr18	7624778	7625778	+	715.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	1585.0	NM_001081287	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	1.72	3.69	0.0	1.35	0.47	0.0	8.45	9.73	8.74
Merged-chr16-22349975-2	chr16	22349474	22350474	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54986.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	25.17	47.92	20.35	39.13	43.85	64.3	48.58	54.83	48.09
Merged-chr6-54960025-2	chr6	54959495	54960495	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	11666.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	24.03	31.33	25.9	22.27	20.53	28.94	27.46	20.34	26.85
Merged-chr5-124467985-1	chr5	124467485	124468485	+	715.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030259, intron 3 of 3)	Tigger7|DNA|TcMar-Tigger	10250.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	5.72	4.61	4.62	5.4	6.53	12.06	2.11	1.33	7.49
Merged-chr15-74924969-3	chr15	74924423	74925423	+	715.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30128.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	84.09	85.25	100.82	52.63	46.18	42.6	97.17	107.45	44.97
Merged-chr3-35751031-3	chr3	35750549	35751549	+	715.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3014.0	NR_151626	76295.0	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.0	2.3	11.1	6.75	3.73	4.82	6.34	3.98	6.25
Merged-chr6-5379262-2	chr6	5378769	5379769	+	715.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4117.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	15.45	12.9	3.7	9.45	2.8	9.65	22.18	18.57	18.74
Merged-chr2-166304750-1	chr2	166304250	166305250	+	715.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30842.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	15.45	12.44	7.4	41.16	24.72	31.35	35.91	17.24	21.23
Merged-chr11-115182470-3	chr11	115181984	115182984	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025400)	TTS (NM_025400)	4832.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	11.44	11.52	5.55	16.19	5.13	11.25	3.17	9.73	9.37
Merged-chr4-136884717-3	chr4	136884244	136885244	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	1433.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	64.64	74.19	112.84	53.98	51.32	76.36	102.45	96.83	56.21
Merged-chr3-127626264-1	chr3	127625764	127626764	+	715.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.43	4.61	1.85	2.7	3.27	1.61	5.28	0.44	1.25
Merged-chr6-134102606-3	chr6	134102094	134103094	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	66894.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	21.74	16.13	17.57	10.8	17.26	17.68	23.24	10.61	16.24
Merged-chr8-34806453-3	chr8	34805974	34806974	+	715.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1136.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	30.32	15.67	13.87	33.06	23.33	4.02	33.8	19.9	5.62
Merged-chr1-51667882-2	chr1	51667387	51668387	+	715.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71169.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	7.44	11.98	20.35	0.0	1.4	0.0	8.45	10.17	14.99
Merged-chr15-53822061-3	chr15	53821558	53822558	+	715.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	80378.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	1.72	5.99	1.85	3.37	9.33	4.82	0.0	3.54	1.25
Merged-chr16-92457846-3	chr16	92457343	92458343	+	715.638855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	MLT1A|LTR|ERVL-MaLR	8326.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	1.14	1.38	1.85	3.37	1.4	1.61	0.0	1.33	1.25
Merged-chr15-11964257-3	chr15	11963758	11964758	+	715.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2804.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	1.14	2.3	7.4	2.7	1.4	0.8	4.22	3.1	6.25
Merged-chr3-97961214-1	chr3	97960714	97961714	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	31041.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	6.29	3.69	0.0	7.42	3.73	4.02	5.28	1.77	3.75
Merged-chr16-20099371-2	chr16	20098860	20099860	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029436, intron 1 of 7)	intron (NM_029436, intron 1 of 7)	1806.0	NM_029436	75785.0	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	18.31	31.79	23.12	28.34	23.33	27.33	31.69	24.76	24.36
Merged-chr14-101520215-1	chr14	101519715	101520715	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	88976.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	2.29	5.07	1.85	2.7	2.33	0.8	2.11	0.88	2.5
Merged-chr5-137338409-2	chr5	137337914	137338914	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	15.45	6.45	9.25	12.82	14.46	15.27	9.51	3.98	12.49
Merged-chr7-99675004-2	chr7	99674489	99675489	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	20820.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	13.73	9.22	7.4	29.01	19.13	15.27	13.73	13.71	7.49
Merged-chr10-39499291-1	chr10	39498791	39499791	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	-113643.0	NM_134000	103213.0	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	6.86	4.15	9.25	3.37	0.47	3.22	0.0	0.44	2.5
Merged-chr15-6426057-1	chr15	6425557	6426557	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 9 of 13)	intron (NM_001008702, intron 9 of 13)	-19276.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	5.72	7.83	7.4	12.82	7.0	11.25	7.39	6.19	5.0
Merged-chr4-59879608-1	chr4	59879108	59880108	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 4 of 8)	intron (NM_172468, intron 4 of 8)	35448.0	NM_021053	30936.0	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	18.88	20.27	18.5	14.84	11.66	22.51	9.51	9.29	8.74
Merged-chr9-68859051-2	chr9	68858551	68859551	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	93705.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	20.02	9.22	1.85	7.42	6.06	19.29	10.56	4.42	9.99
Merged-chr7-141048028-1	chr7	141047528	141048528	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13246.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	21.74	17.97	11.1	19.57	15.86	27.33	16.9	9.29	19.36
Merged-chr2-34108990-1	chr2	34108490	34109490	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1255.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	15.45	8.29	8.32	20.92	14.93	19.29	27.46	28.74	19.36
Merged-chr10-93262301-2	chr10	93261793	93262793	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282967, intron 2 of 3)	intron (NM_001282967, intron 2 of 3)	48866.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	33.75	30.87	41.62	46.56	29.86	64.3	52.81	48.64	29.98
Merged-chr16-37685394-1	chr16	37684894	37685894	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31026.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	20.02	16.13	5.55	8.77	10.73	12.06	6.34	5.75	9.37
Merged-chr1-171160828-1	chr1	171160328	171161328	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008623, exon 8 of 8)	3' UTR (NM_008623, exon 8 of 8)	5310.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	8.58	5.07	5.55	6.75	6.53	0.0	1.06	1.33	2.5
Merged-chr18-61065698-1	chr18	61065198	61066198	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008809, intron 6 of 22)	intron (NM_008809, intron 6 of 22)	20548.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	3.43	3.69	0.0	3.37	1.87	3.22	0.0	0.0	1.25
Merged-chr19-29487608-1	chr19	29487108	29488108	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34379.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	196.79	170.95	160.94	289.45	163.74	198.54	247.15	258.23	99.3
Merged-chr17-46453539-1	chr17	46453039	46454039	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-15062.0	NM_144856	108114.0	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	2.86	3.69	3.7	8.1	2.33	0.0	11.62	1.33	1.25
Merged-chr15-99585100-1	chr15	99584600	99585600	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009699)	TTS (NM_009699)	-5928.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	6.86	4.61	7.4	10.12	2.33	0.0	6.34	3.54	1.25
Merged-chr8-107095918-1	chr8	107095418	107096418	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106043)	TTS (NR_106043)	188.0	NR_106043	102465652.0		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	244.27	205.97	209.96	193.64	181.01	208.98	220.74	185.27	144.27
Merged-chr8-120276591-2	chr8	120276104	120277104	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48374.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	2.29	0.92	4.62	4.05	0.93	4.82	4.22	1.33	6.25
Merged-chr17-65950787-2	chr17	65950287	65951287	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023053, intron 1 of 4)	CpG	400.0	NM_023053	65960.0	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	34.32	14.75	11.1	31.71	15.39	11.25	30.63	14.15	3.75
Merged-chr5-103819852-3	chr5	103819355	103820355	+	715.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133919, intron 7 of 19)	intron (NM_133919, intron 7 of 19)	65282.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	12.59	8.75	7.4	11.47	5.13	12.86	14.79	14.15	14.99
Merged-chr1-180736764-2	chr1	180736252	180737252	+	715.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133225, exon 4 of 8)	exon (NM_133225, exon 4 of 8)	10709.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	19.45	16.59	37.92	24.29	10.73	27.33	14.79	18.13	18.11
Merged-chr5-65873182-2	chr5	65872685	65873685	+	715.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	9616.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	42.33	43.77	38.85	39.13	21.93	31.35	35.91	36.7	24.98
Merged-chr10-80145582-3	chr10	80145048	80146048	+	715.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025313, exon 4 of 4)	3' UTR (NM_025313, exon 4 of 4)	-2724.0	NM_001305798	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	12.59	5.99	5.55	6.75	6.06	8.04	2.11	13.71	8.74
Merged-chr16-31355113-2	chr16	31354608	31355608	+	715.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29818.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	1.72	0.92	0.0	4.05	4.2	1.61	1.06	3.54	0.0
Merged-chr11-60844855-2	chr11	60844362	60845362	+	715.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172112, intron 2 of 6)	intron (NM_001172112, intron 2 of 6)	14231.0	NM_145428	216820.0	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.0	0.92	1.85	8.77	3.73	0.0	6.34	4.42	3.75
Merged-chr4-59626662-1	chr4	59626162	59627162	+	715.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015681, intron 1 of 3)	CpG	451.0	NM_153158	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	18.31	5.07	3.7	10.8	7.0	12.86	10.56	7.96	1.87
Merged-chr6-82844014-3	chr6	82843550	82844550	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37803.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	9.15	7.37	7.4	10.12	3.73	4.82	6.34	4.86	5.62
Merged-chr9-65772348-3	chr9	65771848	65772848	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 2 of 9)	B1F|SINE|Alu	55216.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	6.29	7.83	5.55	11.47	3.73	12.86	9.51	2.65	14.36
Merged-chr9-21030410-3	chr9	21029910	21030910	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_023892, exon 3 of 3)	exon (NM_023892, exon 3 of 3)	1037.0	NM_023892	78369.0	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	42.33	37.32	54.57	37.11	25.66	38.58	48.58	49.52	46.22
Merged-chr6-125482528-1	chr6	125482028	125483028	+	715.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	12232.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	33.18	18.43	24.05	24.96	9.33	16.08	69.71	54.39	36.85
Merged-chr2-119662813-1	chr2	119662313	119663313	+	715.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356467)	promoter-TSS (NM_001356467)	21.0	NM_001356467	69702.0	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	49.77	52.99	47.17	52.63	49.45	59.48	41.19	36.26	28.1
Merged-chr8-11393736-1	chr8	11393236	11394236	+	715.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 4 of 47)	ID2|SINE|ID	-80910.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	1.72	1.84	0.92	3.37	2.33	3.22	1.06	3.1	5.62
Merged-chr18-36197401-3	chr18	36196866	36197866	+	715.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001167891)	promoter-TSS (NM_001167891)	-206.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	6.29	0.92	9.25	7.42	0.93	0.0	4.22	2.21	1.25
Merged-chr11-74634706-3	chr11	74634202	74635202	+	715.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013784, intron 2 of 3)	intron (NM_001013784, intron 2 of 3)	-14793.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	7.44	4.15	0.0	8.77	0.0	7.23	3.17	8.84	0.0
Merged-chr14-50352611-2	chr14	50352116	50353116	+	715.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41|LTR|ERV1	-5298.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	3.43	0.92	3.7	3.37	0.47	1.61	4.22	2.65	1.87
Merged-chr18-61459529-2	chr18	61459011	61460011	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25096.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	5.72	2.3	1.85	2.7	0.93	4.02	9.51	0.88	1.25
Merged-chr9-67847326-2	chr9	67846858	67847858	+	715.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177184, intron 1 of 84)	intron (NM_177184, intron 1 of 84)	6962.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	33.18	50.23	21.27	28.34	34.52	38.58	29.57	11.94	8.74
Merged-chr18-4438218-2	chr18	4437723	4438723	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62631.0	NM_001361009	67440.0	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	6.29	5.07	4.62	4.72	4.67	0.0	8.45	7.07	1.25
Merged-chr13-112510587-1	chr13	112510087	112511087	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46517.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	2.86	2.3	2.77	5.4	2.33	4.82	2.11	5.75	5.0
Merged-chr2-73454898-2	chr2	73454394	73455394	+	715.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	(CGGGG)n|Simple_repeat|Simple_repeat	-1005.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	69.79	82.02	110.07	97.16	49.45	68.32	98.23	153.87	100.55
Merged-chr15-30646919-3	chr15	30646390	30647390	+	715.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008729, exon 7 of 23)	exon (NM_008729, exon 7 of 23)	-392236.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	6.29	1.38	0.0	4.72	3.27	4.02	4.22	2.21	3.75
Merged-chr7-121073760-3	chr7	121073256	121074256	+	715.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030691, intron 1 of 5)	intron (NM_030691, intron 1 of 5)	774.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	136.15	181.09	130.42	151.14	194.53	147.09	195.39	198.53	162.38
Merged-chr16-33895905-3	chr16	33895356	33896356	+	715.222229	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145884, intron 5 of 14)	intron (NM_001145884, intron 5 of 14)	66191.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	22.88	18.89	33.3	41.16	30.79	32.15	45.42	31.39	27.48
Merged-chr7-80179997-3	chr7	80179495	80180495	+	715.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6846.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	24.03	31.79	37.0	19.57	11.2	9.65	135.19	174.66	76.82
Merged-chr12-40221131-2	chr12	40220641	40221641	+	715.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	1670.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	49.77	77.87	47.17	58.7	65.31	40.99	60.2	58.37	29.35
Merged-chr8-33778755-2	chr8	33778242	33779242	+	715.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30972.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	1.72	1.84	3.7	5.4	2.33	1.61	6.34	2.21	6.87
Merged-chr7-133186500-2	chr7	133185997	133186997	+	715.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	58246.0	NR_046279	74970.0	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.0	2.76	1.85	4.72	3.73	9.65	2.11	0.88	3.75
Merged-chr10-54118607-2	chr10	54118117	54119117	+	715.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42695.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	272.3	242.83	107.29	206.46	177.27	121.37	137.3	152.99	133.65
Merged-chr16-23245347-2	chr16	23244844	23245844	+	715.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	19323.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	14.3	6.45	10.17	17.54	9.33	4.82	10.56	13.27	7.49
Merged-chr5-142815450-3	chr5	142814872	142815872	+	715.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001122730, exon 2 of 28)	5' UTR (NM_001122730, exon 2 of 28)	2015.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	48.05	41.47	70.3	38.46	21.93	54.66	57.03	41.12	97.43
Merged-chr1-151948234-1	chr1	151947734	151948734	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 3 of 5)	intron (NM_197990, intron 3 of 5)	142086.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	33.75	47.0	31.45	35.76	32.66	40.99	21.12	32.28	11.87
Merged-chr16-64801839-1	chr16	64801339	64802339	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347245, intron 3 of 8)	ORR1A2|LTR|ERVL-MaLR	-15518.0	NM_028059	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	5.72	7.37	6.47	10.8	9.33	11.25	5.28	2.21	7.49
Merged-chr4-126829116-2	chr4	126828613	126829613	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035525, intron 7 of 23)	intron (NM_001035525, intron 7 of 23)	75343.0	NM_001035526	100317.0	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	1.72	4.15	7.4	1.35	2.8	3.22	6.34	1.33	5.0
Merged-chr16-49818136-1	chr16	49817636	49818636	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-37518.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	45.76	47.92	43.47	37.78	34.06	57.87	36.97	47.31	43.09
Merged-chr1-54492560-1	chr1	54492060	54493060	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163314, intron 22 of 26)	intron (NM_001163314, intron 22 of 26)	-53534.0	NM_001033194	98488.0	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	3.43	5.07	5.55	5.4	6.06	11.25	5.28	4.42	1.25
Merged-chr7-34266238-2	chr7	34265729	34266729	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172741, intron 1 of 12)	intron (NM_172741, intron 1 of 12)	19380.0	NM_172741	233103.0	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	5.15	11.06	14.8	6.07	6.53	6.43	19.01	10.61	8.74
Merged-chr1-170703168-1	chr1	170702668	170703668	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58636.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	5.72	3.69	7.4	13.49	10.26	13.66	5.28	2.65	3.75
Merged-chr1-184561584-1	chr1	184561084	184562084	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3893.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	18.31	6.45	5.55	11.47	6.53	11.25	6.34	3.1	5.0
Merged-chr2-142819213-1	chr2	142818713	142819713	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	Lx2|LINE|L1	82251.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	4.0	2.76	9.25	2.02	4.67	1.61	2.11	3.1	0.0
Merged-chr15-36499995-3	chr15	36499491	36500491	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3200.0	NM_175134	68839.0	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	5.72	6.91	11.1	12.14	3.73	12.86	4.22	5.75	8.12
Merged-chr13-22040505-1	chr13	22040005	22041005	+	715.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175656)	TTS (NM_175656)	857.0	NM_175656	319158.0	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	50.91	71.42	37.0	42.51	46.65	75.56	91.89	88.88	59.33
Merged-chr11-44586235-1	chr11	44585735	44586735	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_126460)	promoter-TSS (NR_126460)	-82.0	NR_126460	75389.0	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	6.86	2.76	0.0	0.67	1.4	1.61	2.11	2.65	1.87
Merged-chr4-72438757-1	chr4	72438257	72439257	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	237513.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	7.44	6.91	6.47	5.4	6.53	5.63	4.22	7.96	6.25
Merged-chr11-21092888-1	chr11	21092388	21093388	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023324, intron 1 of 6)	intron (NM_023324, intron 1 of 6)	1564.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	60.07	105.98	42.55	56.68	53.18	43.4	95.06	91.09	36.85
Merged-chr8-39643751-1	chr8	39643251	39644251	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-1073.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	38.33	77.41	70.3	78.94	71.84	77.16	50.7	65.0	36.22
Merged-chr18-84085859-2	chr18	84085359	84086359	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081300, exon 1 of 2)	5' UTR (NM_001081300, exon 1 of 2)	703.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	13.16	16.13	25.9	20.92	20.06	28.13	32.74	26.97	20.61
Merged-chr5-142902354-1	chr5	142901854	142902854	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007393)	TTS (NM_007393)	4400.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	11.44	12.44	13.87	16.19	11.2	14.47	22.18	13.71	13.12
Merged-chr15-78331698-1	chr15	78331198	78332198	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	5708.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	15.45	23.04	14.8	9.45	17.26	9.65	20.07	19.01	11.24
Merged-chr1-183297699-1	chr1	183297199	183298199	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-406.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	56.06	57.14	81.4	65.45	48.52	69.93	76.05	56.16	50.59
Merged-chr12-44919077-3	chr12	44918575	44919575	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	MLT2B2|LTR|ERVL	155408.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	4.0	6.45	14.8	6.75	2.8	12.06	3.17	5.75	8.74
Merged-chr6-49321476-1	chr6	49320976	49321976	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311112, intron 1 of 3)	intron (NM_001311112, intron 1 of 3)	2202.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	6.29	10.6	3.7	7.42	11.66	7.23	10.56	1.33	9.99
Merged-chr1-39522733-1	chr1	39522233	39523233	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12968.0	NM_028043	52846.0	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	3.43	5.53	7.4	4.72	2.8	0.0	2.11	2.21	0.0
Merged-chr12-103434828-1	chr12	103434328	103435328	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194069, intron 1 of 3)	RMER10B|LTR|ERVL	639.0	NM_194069	52668.0	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	105.26	111.97	83.25	101.88	120.83	115.75	140.47	184.83	66.82
Merged-chr19-15925837-1	chr19	15925337	15926337	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177420)	promoter-TSS (NM_177420)	-778.0	NM_177420	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	9.15	6.45	3.7	7.42	8.86	3.22	4.22	4.42	3.75
Merged-chr8-33797528-1	chr8	33797028	33798028	+	715.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286168, intron 5 of 7)	intron (NM_001286168, intron 5 of 7)	-49758.0	NM_001206849	72632.0	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	1.72	0.92	3.7	0.67	0.93	1.61	4.22	0.88	2.5
Merged-chr14-61686912-1	chr14	61686412	61687412	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-4539.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	33.18	29.03	35.15	20.92	20.06	34.56	35.91	24.32	19.36
Merged-chr11-58021298-1	chr11	58020798	58021798	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	12234.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	21.74	19.35	21.27	14.17	13.06	28.13	24.29	11.05	5.0
Merged-chrX-155543984-1	chrX	155543484	155544484	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	79343.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	1.72	2.3	0.0	4.05	2.8	2.41	3.17	0.44	0.0
Merged-chr5-65703396-1	chr5	65702896	65703896	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-5540.0	NM_001081321	71521.0	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	6.86	4.15	12.95	4.72	5.13	1.61	5.28	6.63	6.25
Merged-chr4-139576434-1	chr4	139575934	139576934	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	intron (NM_001205173, intron 1 of 8)	1714.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	8.01	4.15	5.55	4.05	0.93	1.61	6.34	3.54	6.25
Merged-chr9-110999468-1	chr9	110998968	110999968	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152179, intron 2 of 6)	intron (NR_152179, intron 2 of 6)	-9755.0	NM_153100	235636.0	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	1.72	6.45	15.72	4.05	4.2	8.04	5.28	3.1	7.49
Merged-chr4-133688476-1	chr4	133687976	133688976	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 12 of 19)	intron (NM_001080819, intron 12 of 19)	-15310.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	21.17	10.6	5.55	14.84	11.2	8.84	12.67	8.84	3.75
Merged-chr6-116818919-1	chr6	116818419	116819419	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102161.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	1.14	3.69	0.0	2.7	0.47	1.61	3.17	1.33	1.25
Merged-chr8-33386197-2	chr8	33385695	33386695	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001098233)	promoter-TSS (NM_001098233)	-130.0	NM_152821	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	35.47	28.11	49.95	31.04	25.19	30.54	69.71	36.26	38.72
Merged-chr3-9000501-2	chr3	9000004	9001004	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	RMER6A|LTR|ERVK	3700.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	21.74	29.03	16.65	20.92	13.53	24.11	15.84	11.94	21.23
Merged-chr8-111537302-1	chr8	111536802	111537802	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001168621, exon 1 of 5)	exon (NM_001168621, exon 1 of 5)	662.0	NM_001168621	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	14.87	15.67	5.55	16.19	17.73	23.31	26.4	15.48	16.86
Merged-chr15-28416815-1	chr15	28416315	28417315	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 65 of 78)	intron (NM_133365, intron 65 of 78)	213049.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	8.01	10.14	3.7	6.75	7.46	3.22	7.39	4.86	9.99
Merged-chr8-35378966-1	chr8	35378466	35379466	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177741, intron 1 of 1)	intron (NM_177741, intron 1 of 1)	3225.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	26.89	29.49	20.35	26.99	18.19	20.9	26.4	22.99	11.24
Merged-chr10-93431089-1	chr10	93430589	93431589	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2018.0	NR_106161	102465791.0		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	8.58	1.84	2.77	2.7	3.73	3.22	5.28	1.33	4.37
Merged-chr19-55751689-1	chr19	55751189	55752189	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	9879.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	9.15	16.13	31.45	6.75	7.46	20.09	11.62	13.27	15.61
Merged-chr1-181345708-2	chr1	181345215	181346215	+	715.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6913.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	3.43	3.23	4.62	4.72	4.2	4.82	2.11	5.75	5.62
Merged-chr12-84011639-1	chr12	84011139	84012139	+	715.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012006, intron 1 of 2)	intron (NM_012006, intron 1 of 2)	2137.0	NM_012006	26897.0	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	13.16	11.52	16.65	11.47	11.2	11.25	4.22	3.1	1.25
Merged-chr3-116251764-3	chr3	116251275	116252275	+	714.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022427, exon 2 of 2)	exon (NM_022427, exon 2 of 2)	1709.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	10.87	5.07	1.85	14.17	0.0	5.63	4.22	1.77	2.5
Merged-chr7-80109563-2	chr7	80109069	80110069	+	714.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	5781.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	8.58	3.23	1.85	8.1	1.87	6.43	4.22	2.21	1.25
Merged-chr8-79398119-3	chr8	79397610	79398610	+	714.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	1358.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	67.5	57.14	39.77	54.65	49.92	69.93	72.88	49.08	31.85
Merged-chr10-41678929-3	chr10	41678403	41679403	+	714.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 7 of 47)	intron (NM_001358562, intron 7 of 47)	37560.0	NM_001358562	75973.0	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	2.86	3.69	0.0	1.35	4.67	6.43	7.39	0.44	5.0
Merged-chr2-117780533-3	chr2	117780028	117781028	+	714.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32274.0	NR_126427	100504728.0	Mm.413174	NR_126427		Gm13985	-	predicted gene 13985	ncRNA	4.58	3.69	1.85	4.72	2.8	3.22	10.56	7.96	2.5
Merged-chr7-105626890-3	chr7	105626387	105627387	+	714.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018880, intron 1 of 11)	intron (NM_018880, intron 1 of 11)	6684.0	NM_018880	55992.0	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	9.72	8.29	11.1	8.77	4.2	9.65	4.22	7.07	8.74
Merged-chr7-123431406-2	chr7	123430913	123431913	+	714.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23596.0	NM_001355050	30949.0	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	6.29	5.53	16.65	10.8	10.73	11.25	10.56	11.5	3.75
Merged-chr8-25225090-3	chr8	25224706	25225706	+	714.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23664.0	NM_177089	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	12.59	7.37	9.25	6.75	5.13	3.22	12.67	4.42	3.75
Merged-chr12-52504675-6	chr12	52504251	52505251	+	714.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11326.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	118.99	98.15	86.02	91.76	112.43	122.18	138.36	106.56	85.56
Merged-chr13-51850555-4	chr13	51850011	51851011	+	714.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3836.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	6.86	12.9	9.25	12.14	5.13	8.04	4.22	5.75	6.25
Merged-chr16-93026422-2	chr16	93025917	93026917	+	714.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-200343.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	24.03	23.96	9.25	29.69	15.39	10.45	16.9	18.57	16.24
Merged-chr19-11497419-3	chr19	11496924	11497924	+	714.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164202, intron 1 of 4)	intron (NM_001164202, intron 1 of 4)	5386.0	NM_001164202	666926.0	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	17.16	15.21	18.5	16.19	14.0	14.47	12.67	19.01	9.99
Merged-chr4-152448014-1	chr4	152447514	152448514	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010598, intron 1 of 15)	intron (NM_010598, intron 1 of 15)	841.0	NM_001252655	16498.0	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	18.88	27.19	26.82	37.78	41.05	41.8	26.4	12.82	9.99
Merged-chr2-119799510-2	chr2	119799012	119800012	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019392)	promoter-TSS (NM_019392)	-2.0	NM_019392	22174.0	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.57	4.61	3.7	2.02	1.4	0.0	2.11	0.44	3.75
Merged-chr3-85574676-2	chr3	85574148	85575148	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 1 of 12)	intron (NM_144896, intron 1 of 12)	519.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	144.73	205.51	162.79	167.33	243.05	191.3	217.57	220.64	138.65
Merged-chr3-106782156-2	chr3	106781661	106782661	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	Lx6|LINE|L1	7988.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	21.74	20.74	27.75	20.24	12.6	9.65	17.96	10.17	17.49
Merged-chr7-44312085-2	chr7	44311575	44312575	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034115, intron 1 of 24)	intron (NM_001034115, intron 1 of 24)	1811.0	NM_001034115	243961.0	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3 and multiple ankyrin repeat domains 1	protein-coding	1.72	1.84	0.0	2.7	1.87	0.0	3.17	0.44	6.25
Merged-chr17-43030366-1	chr17	43029866	43030866	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	13811.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	44.62	51.15	51.8	31.71	29.86	30.54	17.96	19.01	24.98
Merged-chr11-118423444-2	chr11	118422926	118423926	+	714.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4308.0	NM_001267592	76025.0	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	15.45	15.21	9.25	16.19	13.06	14.47	19.01	12.82	12.49
Merged-chr10-81190299-3	chr10	81189803	81190803	+	714.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190473, intron 3 of 8)	CpG	-4388.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	8.58	6.45	9.25	16.87	2.8	12.86	5.28	5.75	8.12
Merged-chr19-7495513-3	chr19	7495012	7496012	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	(A)n|Simple_repeat|Simple_repeat	1074.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	113.84	148.37	108.22	105.26	112.43	90.02	103.51	145.47	91.18
Merged-chr2-102819706-1	chr2	102819206	102820206	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	-72946.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	10.3	0.46	5.55	4.72	2.8	15.27	9.51	4.42	21.86
Merged-chr7-45023898-1	chr7	45023398	45024398	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	4301.0	NM_001360133	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	5.72	0.46	0.92	1.35	0.47	6.43	3.17	0.88	5.0
Merged-chr13-58113405-3	chr13	58112897	58113897	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001362415, exon 1 of 15)	5' UTR (NM_001362415, exon 1 of 15)	250.0	NM_001362415	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	5.72	1.84	1.85	8.1	5.6	8.04	3.17	4.86	6.87
Merged-chr9-96322824-1	chr9	96322324	96323324	+	714.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001184710, exon 10 of 10)	3' UTR (NM_001184710, exon 10 of 10)	40891.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	24.6	26.73	73.07	10.8	14.46	9.65	58.09	58.81	39.35
Merged-chr19-6331859-3	chr19	6331358	6332358	+	714.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3121.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	14.87	12.44	7.4	10.12	6.06	4.82	6.34	13.27	6.25
Merged-chr18-36558153-2	chr18	36557653	36558653	+	714.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2450.0	NM_175375	108857.0	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	42.33	50.69	43.47	22.94	20.06	13.66	69.71	68.98	16.86
Merged-chr10-30723168-2	chr10	30722662	30723662	+	714.633301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	ID4|SINE|ID	-67295.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	19.45	12.9	5.55	11.47	11.66	8.04	14.79	13.71	18.74
Merged-chr7-4556952-3	chr7	4556453	4557453	+	714.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207270, intron 12 of 19)	intron (NM_207270, intron 12 of 19)	-9412.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	6.29	3.69	3.7	2.02	5.13	4.02	1.06	0.88	0.0
Merged-chr11-43363166-3	chr11	43362677	43363677	+	714.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	11284.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	11.44	21.2	12.02	13.49	5.6	12.86	9.51	13.71	6.87
Merged-chr17-86232402-2	chr17	86231891	86232891	+	714.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	MIR|SINE|MIR	54787.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.43	4.15	0.0	3.37	5.13	0.0	4.22	2.65	0.0
Merged-chr13-117289866-2	chr13	117289364	117290364	+	714.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69291.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	2.29	0.92	0.0	2.02	0.93	1.61	1.06	2.65	1.87
Merged-chr2-59316710-2	chr2	59316208	59317208	+	714.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 9 of 20)	intron (NM_175464, intron 9 of 20)	69974.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	5.72	8.29	9.25	11.47	9.8	9.65	6.34	4.86	5.0
Merged-chr12-111743523-2	chr12	111743021	111744021	+	714.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	L1MB3|LINE|L1	-15328.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	42.9	44.7	23.12	49.93	51.32	58.68	42.25	49.52	31.23
Merged-chr11-4710283-3	chr11	4709737	4710737	+	714.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026015, intron 1 of 5)	B1_Mur3|SINE|Alu	5581.0	NM_001356390	67178.0	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	1.14	2.76	0.0	4.05	2.8	3.22	5.28	3.98	10.62
Merged-chr15-60779845-3	chr15	60779348	60780348	+	714.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43117.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	9.15	3.69	0.0	5.4	8.86	11.25	4.22	2.65	2.5
Merged-chr14-50363768-1	chr14	50363268	50364268	+	714.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_205819)	TTS (NM_205819)	5854.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	8.01	14.28	12.02	4.05	7.93	6.43	11.62	11.94	11.87
Merged-chr1-87184970-3	chr1	87184490	87185490	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027084, intron 4 of 12)	intron (NM_027084, intron 4 of 12)	1676.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	5.72	2.3	3.7	2.7	1.4	2.41	0.0	0.0	0.0
Merged-chr2-146834948-2	chr2	146834452	146835452	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20937.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.0	3.23	7.4	2.02	1.87	3.22	3.17	0.0	3.75
Merged-chr14-87464389-1	chr14	87463889	87464889	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253755, intron 3 of 11)	intron (NM_001253755, intron 3 of 11)	47806.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	6.86	0.0	0.0	2.02	2.33	8.04	7.39	2.65	3.12
Merged-chr6-24666518-1	chr6	24666018	24667018	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1523.0	NM_028459	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	5.15	7.37	5.55	14.84	10.26	11.25	7.39	4.86	13.74
Merged-chr4-148625895-2	chr4	148625388	148626388	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003898, intron 1 of 6)	intron (NM_001003898, intron 1 of 6)	1108.0	NR_027864	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	93.82	88.47	64.75	94.46	113.83	65.91	81.33	79.15	41.22
Merged-chr7-117481629-2	chr7	117481125	117482125	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100646.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	10.87	5.53	7.4	4.05	9.33	10.45	3.17	3.98	4.37
Merged-chr13-59004718-2	chr13	59004212	59005212	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025074, intron 13 of 17)	intron (NM_001025074, intron 13 of 17)	197015.0	NM_001025074	18212.0	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	86.95	115.66	108.22	114.03	112.43	127.8	129.91	145.92	66.2
Merged-chr6-99206217-2	chr6	99205623	99206623	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	60392.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	52.63	55.75	22.2	52.63	37.79	40.99	70.76	49.08	34.97
Merged-chrX-10903071-1	chrX	10902571	10903571	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	185706.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	1.14	5.07	9.25	2.7	5.13	6.43	6.34	3.98	2.5
Merged-chr8-34124091-2	chr8	34123595	34124595	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001126314, exon 3 of 3)	exon (NM_001126314, exon 3 of 3)	9065.0	NM_001126314	234155.0	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	5.15	2.3	6.47	6.07	5.6	1.61	2.11	4.42	5.0
Merged-chr2-21146772-2	chr2	21146276	21147276	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58589.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	12.59	8.29	7.4	10.12	13.53	7.23	9.51	6.63	13.74
Merged-chr17-29459769-1	chr17	29459269	29460269	+	714.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31276.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.86	0.92	1.85	2.7	4.2	6.43	9.51	3.1	5.0
Merged-chr1-57378202-2	chr1	57377706	57378706	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_037999)	promoter-TSS (NR_037999)	586.0	NM_028546	73467.0	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	70.36	60.82	57.35	62.75	85.37	72.34	87.66	79.15	37.47
Merged-chrX-48515332-2	chrX	48514816	48515816	+	714.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1753.0	NM_012019	26926.0	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	18.31	12.44	5.55	17.54	9.8	16.88	8.45	10.61	1.25
Merged-chr7-100700027-2	chr7	100699519	100700519	+	714.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6616.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	22.31	11.98	8.32	11.47	13.06	21.7	12.67	11.5	13.74
Merged-chr8-72136845-3	chr8	72136348	72137348	+	714.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1556.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	13.16	16.59	14.8	20.92	21.46	18.49	25.35	10.61	13.74
Merged-chr8-61575333-3	chr8	61574847	61575847	+	714.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	15822.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	11.44	11.52	28.67	22.27	17.73	22.51	17.96	16.8	9.99
Merged-chr2-180580506-1	chr2	180580006	180581006	+	714.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028479)	promoter-TSS (NM_028479)	-716.0	NM_028479	73247.0	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	4.58	3.23	16.65	0.67	2.8	8.04	4.22	1.77	1.25
Merged-chr11-101759757-2	chr11	101759262	101760262	+	714.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144831, intron 18 of 22)	intron (NM_144831, intron 18 of 22)	25548.0	NM_008815	18612.0	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	17.16	14.28	13.87	12.82	16.33	15.27	15.84	19.9	18.74
Merged-chr9-106295464-2	chr9	106294961	106295961	+	714.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	14400.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	13.73	11.06	14.8	6.07	12.13	8.04	26.4	15.48	13.74
Merged-chr16-85143721-1	chr16	85143221	85144221	+	714.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	29986.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.58	8.29	3.7	6.75	5.13	6.43	2.11	0.88	8.74
Merged-chr4-33497169-3	chr4	33496666	33497666	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	59085.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	33.18	38.71	35.15	33.06	36.39	23.31	41.19	38.03	16.86
Merged-chr2-167693760-3	chr2	167693259	167694259	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015500, intron 1 of 1)	MIRc|SINE|MIR	2582.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	38.9	39.63	34.22	41.83	35.45	69.93	34.85	36.7	43.09
Merged-chr10-89436106-1	chr10	89435606	89436606	+	714.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079876, intron 2 of 10)	intron (NM_001079876, intron 2 of 10)	7861.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	12.01	9.68	5.55	9.45	6.53	4.82	4.22	3.98	1.25
Merged-chr3-153975896-3	chr3	153975379	153976379	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081263, intron 1 of 21)	intron (NM_001081263, intron 1 of 21)	2443.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	16.59	5.99	5.55	2.7	4.2	5.63	5.28	5.75	6.87
Merged-chr11-76771424-3	chr11	76770923	76771923	+	714.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7845.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	21.74	16.13	23.12	17.54	13.06	15.27	22.18	21.67	22.48
Merged-chr3-65372858-3	chr3	65372347	65373347	+	714.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 13 of 13)	intron (NM_001357358, intron 13 of 13)	19706.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	9.15	17.97	20.35	6.07	6.53	9.65	10.56	11.05	14.36
Merged-chr15-59665601-3	chr15	59665103	59666103	+	714.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16949.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.29	6.45	1.85	2.7	4.67	8.04	0.0	1.77	5.0
Merged-chr2-116978009-3	chr2	116977503	116978503	+	714.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	77851.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	89.81	99.07	82.32	92.44	56.45	69.13	85.55	104.35	52.46
Merged-chr5-113956701-2	chr5	113956192	113957192	+	714.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 9 of 14)	B3|SINE|B2	37065.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	2.29	3.23	0.0	5.4	4.2	3.22	3.17	0.0	3.75
Merged-chr15-82417711-3	chr15	82417233	82418233	+	714.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10539.0	NM_010005	13101.0	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	6.29	0.92	1.85	6.07	0.47	4.02	4.22	6.19	4.37
Merged-chr9-119323727-3	chr9	119323195	119324195	+	714.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1268.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	190.49	223.48	135.97	149.11	183.34	159.95	226.02	255.13	172.99
Merged-chr2-72376138-3	chr2	72375629	72376629	+	714.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	90428.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	27.46	14.28	18.5	12.82	10.26	15.27	43.3	34.49	13.74
Merged-chr2-38469381-3	chr2	38468892	38469892	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42305.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	10.3	5.53	7.4	10.8	4.67	8.04	6.34	3.54	7.49
Merged-chr10-80806102-2	chr10	80805648	80806648	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007445, exon 2 of 5)	exon (NM_007445, exon 2 of 5)	900.0	NM_007445	11705.0	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	8.01	0.46	3.7	8.1	2.8	1.61	3.17	1.77	3.75
Merged-chr5-16506857-3	chr5	16506366	16507366	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46629.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	10.87	22.58	21.27	25.64	27.06	32.96	14.79	21.67	6.87
Merged-chr11-51617914-3	chr11	51617414	51618414	+	714.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1859.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	4.58	7.37	7.4	10.12	4.67	4.82	2.11	6.19	3.75
Merged-chr1-164007650-2	chr1	164007152	164008152	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	12763.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	2.29	2.76	11.1	9.45	7.46	5.63	8.45	7.52	3.75
Merged-chr2-32981588-2	chr2	32981102	32982102	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151460, intron 2 of 8)	CpG-8008	481.0	NR_151461	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	47.48	40.55	33.3	47.9	41.99	40.19	45.42	43.33	20.61
Merged-chrX-159676295-2	chrX	159675777	159676777	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	-32324.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	1.14	5.99	1.85	4.72	4.67	1.61	8.45	1.33	7.49
Merged-chr8-45358607-2	chr8	45358118	45359118	+	714.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153535, intron 1 of 13)	CpG	23673.0	NM_153535	212326.0	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	8.01	4.61	15.72	8.1	3.73	0.8	5.28	7.96	7.49
Merged-chr11-17280138-3	chr11	17279679	17280679	+	714.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	22491.0	NM_001330649	57316.0	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	7.44	1.84	1.85	3.37	2.33	0.0	0.0	0.88	0.0
Merged-chr11-11694316-3	chr11	11693823	11694823	+	714.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301863, intron 1 of 7)	intron (NM_001301863, intron 1 of 7)	4146.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	11.44	26.26	7.4	21.59	13.53	12.86	29.57	12.82	13.74
Merged-chr10-44527314-3	chr10	44526830	44527830	+	714.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68582.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	69.79	68.66	57.35	90.41	89.1	56.27	85.55	101.26	63.7
Merged-chr2-151994495-2	chr2	151993997	151994997	+	714.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-2014.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	6.86	2.3	1.85	6.75	3.73	6.43	4.22	0.88	1.25
Merged-chr19-5592057-3	chr19	5591555	5592555	+	714.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9818.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	16.02	6.91	12.95	10.8	5.6	8.04	8.45	2.65	5.62
Merged-chr19-12783001-3	chr19	12782511	12783511	+	714.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053009, intron 2 of 10)	Lx6|LINE|L1	13112.0	NR_024093	664779.0	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	22.31	27.19	16.65	31.04	30.79	32.15	26.4	39.35	33.1
Merged-chr6-129058195-2	chr6	129057687	129058687	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153094)	TTS (NM_153094)	12286.0	NM_153094	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	1.72	5.07	1.85	5.4	0.93	1.61	1.06	4.42	3.75
Merged-chr12-51705759-2	chr12	51705245	51706245	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-13831.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	4.0	4.61	13.87	9.45	3.73	8.84	2.11	2.65	6.25
Merged-chr13-114984847-1	chr13	114984347	114985347	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033228, intron 18 of 28)	intron (NM_001033228, intron 18 of 28)	-52747.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	2.29	0.46	3.7	4.72	2.33	1.61	3.17	1.33	3.12
Merged-chr15-9094175-1	chr15	9093675	9094675	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040395, intron 6 of 12)	MLT1F1|LTR|ERVL-MaLR	22915.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	5.15	6.45	0.92	2.02	1.4	8.04	6.34	0.44	8.12
Merged-chr3-79532872-3	chr3	79532379	79533379	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162999, intron 1 of 16)	intron (NM_001162999, intron 1 of 16)	34800.0	NM_001162999	329679.0	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	82.95	86.17	61.97	73.54	92.37	68.32	132.02	159.62	55.58
Merged-chr18-80651566-1	chr18	80651066	80652066	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 7 of 9)	intron (NM_198429, intron 7 of 9)	56607.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	5.15	2.76	14.8	6.75	2.8	6.43	6.34	0.44	2.5
Merged-chr18-38427230-2	chr18	38426745	38427745	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	8338.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	15.45	13.82	16.65	8.77	10.73	6.43	13.73	13.27	5.62
Merged-chr8-70005360-1	chr8	70004860	70005860	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8976.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.58	13.82	10.17	6.75	12.13	16.88	12.67	5.75	12.49
Merged-chr6-5255751-1	chr6	5255251	5256251	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	482.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	14.3	22.12	24.97	24.29	22.86	18.49	29.57	14.59	24.98
Merged-chr12-76473868-1	chr12	76473368	76474368	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29371.0	NR_028520	100041694.0	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	4.0	0.92	8.32	7.42	0.47	8.84	3.17	2.65	5.62
Merged-chr8-39656589-1	chr8	39656089	39657089	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	5.15	7.83	0.0	9.45	9.33	4.02	6.34	2.21	8.12
Merged-chr4-129808552-1	chr4	129808052	129809052	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11927.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	14.87	9.68	21.27	14.84	8.86	22.51	70.76	64.11	61.2
Merged-chr2-167357081-2	chr2	167356568	167357568	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7890.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	6.86	2.76	1.85	5.4	0.93	6.43	3.17	6.19	3.75
Merged-chr3-15126914-1	chr3	15126414	15127414	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155713.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	9.15	15.67	5.55	18.89	12.13	26.53	4.22	3.1	7.49
Merged-chr16-76130175-1	chr16	76129675	76130675	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040575, intron 1 of 2)	intron (NR_040575, intron 1 of 2)	7562.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	9.72	2.3	1.85	1.35	2.33	1.61	2.11	2.21	3.75
Merged-chr16-78303211-1	chr16	78302711	78303711	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	1540.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	3.43	6.91	1.85	0.67	3.73	0.0	5.28	3.1	3.75
Merged-chr3-82029380-1	chr3	82028880	82029880	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32458.0	NM_021370	58170.0	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	5.72	5.07	5.55	2.7	5.6	0.0	5.28	1.33	1.87
Merged-chr15-76332907-1	chr15	76332407	76333407	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010331, exon 6 of 12)	exon (NM_010331, exon 6 of 12)	1613.0	NM_010331	14731.0	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.57	1.84	5.55	6.75	0.0	7.23	4.22	2.21	2.5
Merged-chr4-132539639-2	chr4	132539158	132540158	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172400, intron 2 of 8)	PB1D10|SINE|Alu	4099.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	19.45	20.74	14.8	38.46	19.59	33.76	32.74	34.49	14.99
Merged-chr11-107340918-1	chr11	107340418	107341418	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	Lx8|LINE|L1	129802.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	101.83	106.9	65.67	101.21	88.17	60.28	140.47	125.13	69.95
Merged-chr8-85081032-1	chr8	85080532	85081532	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026399)	promoter-TSS (NM_026399)	69.0	NM_001001493	414077.0	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	193.93	170.95	189.62	149.79	111.5	187.28	158.43	164.49	109.92
Merged-chr17-56927022-2	chr17	56926525	56927525	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_022328, exon 2 of 12)	exon (NM_022328, exon 2 of 12)	8363.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	4.58	3.23	5.55	12.82	3.73	8.04	6.34	3.98	5.0
Merged-chr7-45522629-1	chr7	45522129	45523129	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008807)	TTS (NM_008807)	3639.0	NM_008654	17872.0	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	62.35	41.47	44.4	46.56	30.79	40.99	39.08	32.72	35.6
Merged-chr17-28720928-2	chr17	28720420	28721420	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	28352.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	19.45	16.13	16.65	35.09	10.73	14.47	20.07	10.61	15.61
Merged-chr18-56620874-1	chr18	56620374	56621374	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32526.0	NM_026099	67343.0	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	6.29	3.23	5.55	5.4	2.8	1.61	0.0	0.88	0.0
Merged-chr12-4840937-1	chr12	4840437	4841437	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016863, intron 1 of 3)	intron (NM_016863, intron 1 of 3)	658.0	NM_016863	14226.0	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	27.46	22.12	28.67	21.59	24.72	28.94	40.14	35.82	23.11
Merged-chr13-76057406-2	chr13	76056919	76057919	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175495)	promoter-TSS (NM_175495)	-423.0	NM_175495	238725.0	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	1.72	2.76	3.7	2.02	2.33	10.45	3.17	1.33	1.87
Merged-chr5-38500115-1	chr5	38499615	38500615	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145559, intron 1 of 10)	RMER19C|LTR|ERVK	2037.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	4.0	1.38	1.85	3.37	6.06	0.0	8.45	11.5	6.25
Merged-chr1-156469445-1	chr1	156468945	156469945	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009230, intron 1 of 15)	intron (NM_009230, intron 1 of 15)	4883.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	118.42	145.61	68.45	265.84	236.52	147.9	232.36	235.68	98.05
Merged-chr3-106556670-2	chr3	106556169	106557169	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	intron (NM_001025582, intron 3 of 6)	-8867.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	70.93	69.12	73.07	56.68	56.45	79.58	63.37	65.0	66.2
Merged-chr15-51848609-2	chr15	51848112	51849112	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080635, intron 1 of 7)	G-rich|Low_complexity|Low_complexity	16849.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	9.15	7.37	15.72	7.42	4.2	14.47	8.45	5.75	14.36
Merged-chr16-77369973-1	chr16	77369473	77370473	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	40645.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	4.0	3.23	3.7	3.37	6.53	2.41	4.22	2.65	2.5
Merged-chr18-7610327-1	chr18	7609827	7610827	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	-2173.0	NM_001360860	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.57	6.45	2.77	4.72	0.93	5.63	7.39	8.84	9.37
Merged-chr1-191168322-1	chr1	191167822	191168822	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3505.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	6.86	0.92	3.7	6.07	0.0	3.22	3.17	2.65	5.0
Merged-chr7-89395568-1	chr7	89395068	89396068	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	L1MA9|LINE|L1	8654.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.58	2.76	8.32	5.4	1.87	4.82	1.06	2.65	6.25
Merged-chr9-105033866-1	chr9	105033366	105034366	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001357439, exon 16 of 16)	3' UTR (NM_001357439, exon 16 of 16)	-19402.0	NM_053159	94062.0	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	30.89	66.35	23.12	41.83	44.32	70.73	17.96	20.78	22.48
Merged-chr12-77100621-1	chr12	77100121	77101121	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137483.0	NM_001252614	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	5.72	5.99	3.7	6.75	4.67	12.06	5.28	2.65	1.25
Merged-chr8-72321386-1	chr8	72320886	72321886	+	714.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008452, exon 3 of 3)	3' UTR (NM_008452, exon 3 of 3)	2324.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	153.88	142.84	117.47	153.84	80.71	54.66	134.14	129.55	133.02
Merged-chr12-32909905-1	chr12	32909405	32910405	+	714.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43884.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	5.72	4.61	2.77	6.75	2.33	4.82	9.51	4.42	1.25
Merged-chr10-58452437-3	chr10	58451926	58452926	+	714.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011240, intron 2 of 28)	intron (NM_011240, intron 2 of 28)	5574.0	NM_011240	19386.0	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	24.6	32.25	12.95	18.22	14.46	24.11	21.12	30.95	23.73
Merged-chrX-78538803-3	chrX	78538281	78539281	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027322, intron 1 of 3)	Lx5c|LINE|L1	45024.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	11.44	5.99	11.1	4.72	5.13	6.43	4.22	5.75	11.87
Merged-chr5-143679814-3	chr5	143679320	143680320	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	28579.0	NM_001163548	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	13.16	8.29	14.8	16.87	7.0	8.04	3.17	7.07	11.24
Merged-chr17-87331285-3	chr17	87330776	87331776	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 10 of 19)	intron (NM_028639, intron 10 of 19)	48390.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.86	4.61	0.0	7.42	3.27	12.86	2.11	1.77	6.87
Merged-chr17-84169539-3	chr17	84169056	84170056	+	713.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	18391.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	6.29	5.53	0.0	5.4	1.87	7.23	0.0	3.1	1.87
Merged-chr14-14347449-6	chr14	14346869	14347869	+	713.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 2 of 11)	intron (NM_008369, intron 2 of 11)	874.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	80.66	65.43	52.72	48.58	24.26	37.78	53.87	54.39	39.35
Merged-chr18-24305449-2	chr18	24304935	24305935	+	713.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33931.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	2.86	0.46	9.25	2.02	1.4	2.41	3.17	0.0	5.62
Merged-chr1-51334110-2	chr1	51333622	51334622	+	713.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-343.0	NR_045151	442821.0	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	3.43	1.38	0.0	1.35	1.87	3.22	7.39	2.21	2.5
Merged-chr6-97291556-2	chr6	97291059	97292059	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 23 of 23)	intron (NM_145148, intron 23 of 23)	-38779.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	14.3	12.44	7.4	10.12	7.46	4.82	11.62	9.29	5.0
Merged-chr18-65300844-2	chr18	65300355	65301355	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 5 of 12)	intron (NM_001037294, intron 5 of 12)	51994.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	2.86	1.38	3.7	2.7	1.4	2.41	3.17	0.44	2.5
Merged-chr12-71008028-2	chr12	71007540	71008540	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	7783.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	25.17	31.33	36.07	29.69	16.33	18.49	31.69	22.11	19.98
Merged-chr17-17862442-2	chr17	17861950	17862950	+	713.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7262.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	24.6	28.11	24.05	13.49	20.99	8.84	8.45	4.86	5.62
Merged-chr13-99955790-1	chr13	99955290	99956290	+	713.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-55107.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	1.72	3.23	1.85	1.35	1.4	0.0	2.11	3.54	8.12
Merged-chr7-3903904-1	chr7	3903404	3904404	+	713.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011087, intron 1 of 9)	intron (NM_011087, intron 1 of 9)	-5754.0	NM_001289428	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	4.58	0.92	0.0	15.52	3.73	6.43	2.11	2.65	1.25
Merged-chr2-23088658-3	chr2	23088214	23089214	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355638, intron 7 of 13)	intron (NM_001355638, intron 7 of 13)	19642.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	21.17	14.75	26.82	18.22	12.13	32.15	20.07	20.34	22.48
Merged-chr6-47841016-3	chr6	47840503	47841503	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027477, intron 2 of 5)	intron (NM_027477, intron 2 of 5)	5342.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	30.32	52.07	51.8	25.64	23.79	32.96	28.52	31.84	29.98
Merged-chr12-86859493-3	chr12	86858984	86859984	+	713.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25330.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.58	5.53	0.0	8.1	4.2	1.61	2.11	2.21	3.75
Merged-chr7-73628291-3	chr7	73627789	73628789	+	713.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58274.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	8.58	2.3	3.7	2.7	3.27	0.0	2.11	2.21	3.75
Merged-chr1-181228581-3	chr1	181228069	181229069	+	713.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16591.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	8.58	8.75	14.8	18.89	12.6	25.72	7.39	6.63	5.0
Merged-chrX-162828707-3	chrX	162828175	162829175	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	CpG	779.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	30.32	41.93	44.4	25.64	32.19	39.39	38.02	42.01	34.35
Merged-chr1-45826370-3	chr1	45825842	45826842	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31176.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	49.77	86.17	47.17	70.85	80.24	95.65	74.99	103.91	40.59
Merged-chr6-121336774-3	chr6	121336278	121337278	+	713.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144512, intron 13 of 14)	intron (NM_144512, intron 13 of 14)	-6298.0	NM_001347433	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	5.15	2.76	6.47	3.37	1.4	11.25	5.28	5.75	11.87
Merged-chr8-117371420-2	chr8	117370916	117371916	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	22246.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	10.87	7.83	9.25	8.1	7.46	23.31	8.45	5.31	1.87
Merged-chr4-95232666-2	chr4	95232181	95233181	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180459.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.58	5.99	1.85	8.77	7.0	5.63	3.17	0.88	3.12
Merged-chr7-68087698-2	chr7	68087208	68088208	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	135451.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.72	4.61	7.4	2.7	5.6	4.02	6.34	2.65	5.0
Merged-chr19-21714649-2	chr19	21714162	21715162	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61353.0	NM_146096	226016.0	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	26.31	33.64	18.5	39.81	37.32	66.71	71.82	49.52	46.22
Merged-chr1-60621983-2	chr1	60621479	60622479	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55214.0	NM_001045513	77300.0	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	22.31	8.75	1.85	20.24	17.73	7.23	2.11	9.29	8.74
Merged-chr5-54005679-2	chr5	54005195	54006195	+	713.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	7172.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	22.88	28.11	27.75	14.17	7.93	11.25	26.4	24.32	19.98
Merged-chr11-29707614-2	chr11	29707104	29708104	+	713.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10959.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	48.05	70.96	45.32	71.52	79.77	52.25	85.55	102.58	69.32
Merged-chr6-25798395-2	chr6	25797896	25798896	+	713.724976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133931, intron 3 of 17)	intron (NM_133931, intron 3 of 17)	10830.0	NM_133931	101185.0	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	19.45	21.2	9.25	37.11	36.85	32.15	27.46	28.3	17.49
Merged-chr4-6442027-3	chr4	6441560	6442560	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	12211.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	11.44	12.44	7.4	8.1	5.6	3.22	2.11	6.19	4.37
Merged-chr16-91366745-3	chr16	91366237	91367237	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6046.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	58.35	49.76	33.3	86.36	78.84	54.66	36.97	35.37	15.61
Merged-chr8-108767248-3	chr8	108766757	108767757	+	713.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	52613.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	9.72	16.59	21.27	10.8	13.06	21.7	7.39	8.4	7.49
Merged-chr7-120098121-2	chr7	120097598	120098598	+	713.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	4.0	2.76	3.7	6.75	1.87	0.0	1.06	3.1	1.25
Merged-chr7-97315867-3	chr7	97315355	97316355	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177412, intron 5 of 9)	MTC|LTR|ERVL-MaLR	10109.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	10.3	5.07	3.7	8.77	3.27	8.04	2.11	3.98	3.75
Merged-chr4-133820966-3	chr4	133820399	133821399	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53832.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	18.88	19.81	27.75	19.57	14.0	20.9	17.96	22.99	18.74
Merged-chr14-65071041-3	chr14	65070533	65071533	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360385, intron 2 of 5)	intron (NM_001360385, intron 2 of 5)	27073.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	17.16	6.45	16.65	12.82	8.4	9.65	15.84	11.05	16.24
Merged-chr4-106688915-1	chr4	106688415	106689415	+	713.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001126487, intron 21 of 23)	intron (NM_001126487, intron 21 of 23)	-9971.0	NM_028209	72354.0	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	11.44	6.91	1.85	1.35	1.4	4.82	7.39	3.54	3.12
Merged-chr19-44245963-2	chr19	44245454	44246454	+	713.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42666.0	NM_024450	30049.0	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	6.86	5.99	3.7	6.07	1.4	0.0	7.39	0.88	0.0
Merged-chr4-12006848-2	chr4	12006368	12007368	+	713.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40294.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	5.72	7.37	0.0	4.72	6.06	4.82	4.22	4.86	6.87
Merged-chr8-85028875-2	chr8	85028374	85029374	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026760, intron 1 of 2)	intron (NM_026760, intron 1 of 2)	2041.0	NM_026760	68544.0	Mm.196005	NM_026760	ENSMUSG00000041203	Trir	1110002H14Rik|2310036O22Rik|AI854688	telomerase RNA component interacting RNase	protein-coding	34.32	25.8	20.35	23.62	22.86	24.92	25.35	23.43	34.35
Merged-chr2-166665653-2	chr2	166665132	166666132	+	713.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	48200.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	29.75	10.6	20.35	16.87	4.67	8.04	23.24	14.15	12.49
Merged-chr17-80450665-2	chr17	80450154	80451154	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009231, intron 5 of 21)	B3|SINE|B2	29799.0	NM_009231	20662.0	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	12.01	5.07	1.85	5.4	10.73	7.23	19.01	26.53	18.74
Merged-chr6-108625103-2	chr6	108624595	108625595	+	713.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-1928.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	7.44	6.45	0.0	10.8	2.8	4.02	5.28	2.21	5.0
Merged-chr10-126492394-2	chr10	126491892	126492892	+	713.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	217999.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	8.01	5.53	3.7	6.07	2.33	5.63	1.06	1.33	2.5
Merged-chr15-96621886-3	chr15	96621397	96622397	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166456, intron 2 of 15)	intron (NM_001166456, intron 2 of 15)	20065.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	57.78	71.88	31.45	53.3	60.65	59.48	35.91	30.95	33.1
Merged-chr4-120667267-3	chr4	120666778	120667778	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019563, exon 1 of 1)	exon (NM_019563, exon 1 of 1)	715.0	NM_019563	56222.0	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	9.15	3.23	7.4	7.42	2.33	4.82	8.45	2.21	2.5
Merged-chr16-22061862-3	chr16	22061353	22062353	+	713.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183029, intron 15 of 15)	intron (NM_183029, intron 15 of 15)	52369.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	4.0	2.76	9.25	9.45	7.0	4.82	3.17	1.77	2.5
Merged-chr13-110392409-2	chr13	110391905	110392905	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2639.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.86	3.69	1.85	1.35	2.33	0.0	6.34	3.98	1.25
Merged-chr12-100471315-2	chr12	100470794	100471794	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 3 of 19)	PB1D10|SINE|Alu	49528.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	31.46	30.41	24.05	21.59	21.93	33.76	6.34	12.38	5.0
Merged-chr6-143175471-1	chr6	143174971	143175971	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029250, intron 1 of 7)	intron (NM_029250, intron 1 of 7)	8241.0	NM_029250	75320.0	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	7.44	1.38	3.7	9.45	2.33	3.22	5.28	2.21	6.25
Merged-chr11-49075838-1	chr11	49075338	49076338	+	713.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271677)	promoter-TSS (NM_001271677)	-749.0	NM_001271677	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	121.28	88.47	72.15	109.3	56.45	87.61	113.01	110.1	94.93
Merged-chr6-128133909-2	chr6	128133396	128134396	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175414, intron 1 of 8)	intron (NM_175414, intron 1 of 8)	9682.0	NM_175414	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	31.46	33.18	22.2	43.86	21.93	36.17	42.25	23.43	26.23
Merged-chr6-4747265-2	chr6	4746763	4747763	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001130191)	promoter-TSS (NM_001130191)	-43.0	NM_001040611	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	7.44	4.61	7.4	6.75	3.27	3.22	6.34	0.0	1.25
Merged-chr9-106386357-1	chr9	106385857	106386857	+	713.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17725.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	3.43	0.46	3.7	0.67	0.93	4.02	10.56	3.54	2.5
Merged-chr7-63940422-2	chr7	63939962	63940962	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1547.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	19.45	18.43	22.2	19.57	8.4	5.63	35.91	25.65	27.48
Merged-chrX-57362768-1	chrX	57362268	57363268	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24039.0	NM_152801	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	1.14	1.38	3.7	1.35	0.47	3.22	1.06	1.77	1.25
Merged-chr11-22813163-2	chr11	22812669	22813669	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46566.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	38.9	42.85	23.12	33.06	31.72	28.94	42.25	47.31	27.48
Merged-chr10-111368389-1	chr10	111367889	111368889	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR48|LTR|ERV1	69710.0	NM_027914	71769.0	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	4.0	5.99	5.55	4.72	7.0	7.23	7.39	1.77	3.75
Merged-chr15-75920372-1	chr15	75919872	75920872	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025412, intron 1 of 5)	intron (NM_025412, intron 1 of 5)	1188.0	NM_025412	66194.0	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik|Pycr3	pyrroline-5-carboxylate reductase-like	protein-coding	61.21	57.14	30.52	38.46	39.19	49.83	48.58	35.37	26.85
Merged-chr11-30291281-1	chr11	30290781	30291781	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71509.0	NM_175836	20742.0	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.58	4.15	6.47	4.72	1.87	4.82	5.28	2.21	5.62
Merged-chr6-52586809-3	chr6	52586301	52587301	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145567, intron 4 of 7)	intron (NM_145567, intron 4 of 7)	53499.0	NM_145567	58875.0	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	6.86	7.37	18.5	3.37	2.8	4.82	10.56	7.96	1.25
Merged-chr1-87180470-1	chr1	87179970	87180970	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2844.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	8.58	6.45	3.7	6.07	7.0	4.02	6.34	3.98	6.25
Merged-chr5-67463842-2	chr5	67463345	67464345	+	713.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015582)	promoter-TSS (NR_015582)	-53.0	NR_110363	320479.0	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	5.15	5.53	3.7	14.84	15.86	6.43	2.11	1.33	0.0
Merged-chr3-38115063-1	chr3	38114563	38115563	+	713.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93056.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	21.74	37.32	24.97	25.64	19.59	9.65	29.57	21.67	24.36
Merged-chr11-8621846-3	chr11	8621350	8622350	+	713.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	42685.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	68.65	67.74	61.05	61.4	54.58	36.17	43.3	50.41	45.59
Merged-chr8-83757095-2	chr8	83756592	83757592	+	713.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15781.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	2.86	3.23	1.85	3.37	0.93	1.61	3.17	1.33	3.75
Merged-chr7-83724793-3	chr7	83724297	83725297	+	713.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 1 of 18)	intron (NM_001360088, intron 1 of 18)	7601.0	NM_001360087	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	6.86	7.37	3.7	11.47	4.2	11.25	11.62	9.29	13.74
Merged-chr10-61281262-2	chr10	61280769	61281769	+	713.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7831.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	9.72	5.99	5.55	7.42	1.87	3.22	14.79	8.4	4.37
Merged-chr19-55545737-3	chr19	55545252	55546252	+	713.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	156452.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	8.01	5.99	8.32	7.42	5.6	1.61	5.28	5.75	0.0
Merged-chr1-36784873-2	chr1	36784383	36785383	+	713.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5899.0	NM_001289612	22637.0	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	4.58	4.15	2.77	4.72	3.27	6.43	5.28	2.21	1.25
Merged-chr16-52149602-2	chr16	52149104	52150104	+	713.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 9 of 17)	intron (NM_001033238, intron 9 of 17)	118055.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.3	11.98	9.25	12.14	8.86	8.04	16.9	7.96	6.25
Merged-chr14-76780776-1	chr14	76780276	76781276	+	713.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20645.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	4.0	1.84	1.85	0.67	1.87	1.61	6.34	0.88	3.75
Merged-chr6-117168700-1	chr6	117168200	117169200	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021704, exon 1 of 3)	exon (NM_021704, exon 1 of 3)	165.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	8.01	4.15	9.25	4.72	2.33	3.22	4.22	0.88	9.99
Merged-chr11-118228903-1	chr11	118228403	118229403	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	-16161.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	40.04	57.14	49.02	87.71	66.71	92.44	62.31	65.44	26.23
Merged-chr8-120529417-1	chr8	120528917	120529917	+	713.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	L1MB5|LINE|L1	-6440.0	NM_001145897	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	3.43	0.46	2.77	4.72	3.27	4.82	1.06	2.65	1.87
Merged-chr16-13863620-3	chr16	13863103	13864103	+	713.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039533, intron 8 of 22)	intron (NM_001039533, intron 8 of 22)	39542.0	NM_001039533	94184.0	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	40.62	40.55	39.77	35.76	31.26	49.83	57.03	71.63	49.96
Merged-chr12-85570049-3	chr12	85569560	85570560	+	713.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29045.0	NM_001205052	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	14.3	11.06	3.7	7.42	7.0	1.61	8.45	4.86	6.25
Merged-chr13-105327098-2	chr13	105326595	105327595	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-32610.0	NM_001360891	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	6.86	5.07	9.25	7.42	3.73	16.08	8.45	5.75	9.99
Merged-chr7-127873217-2	chr7	127872713	127873713	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362192, intron 2 of 4)	intron (NM_001362192, intron 2 of 4)	2429.0	NM_001362192	244219.0	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	14.3	17.97	3.7	15.52	16.79	19.29	20.07	17.24	17.49
Merged-chr2-73467242-2	chr2	73466724	73467724	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-13335.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	18.88	15.67	15.72	26.99	12.6	13.66	13.73	13.27	21.86
Merged-chr13-74029203-3	chr13	74028719	74029719	+	713.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	19800.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	14.87	12.9	21.27	11.47	8.4	16.88	9.51	2.21	2.5
Merged-chr11-57524812-2	chr11	57524305	57525305	+	713.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145426, intron 1 of 2)	intron (NM_145426, intron 1 of 2)	6140.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	10.3	9.68	10.17	11.47	9.33	11.25	6.34	5.31	6.25
Merged-chr9-21909627-2	chr9	21909137	21910137	+	713.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001324531, exon 5 of 5)	3' UTR (NM_001324531, exon 5 of 5)	8546.0	NM_031874	19340.0	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	7.44	4.61	1.85	6.07	3.27	12.86	4.22	3.1	5.0
Merged-chr6-120915408-3	chr6	120914893	120915893	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1431.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	4.0	6.91	1.85	12.14	6.06	2.41	7.39	7.07	3.75
Merged-chr7-44358530-3	chr7	44358046	44359046	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034115)	TTS (NM_001034115)	16484.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	11.44	12.44	10.17	14.84	7.0	20.09	20.07	11.94	7.49
Merged-chr8-125113494-3	chr8	125112955	125113955	+	713.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 3 of 12)	intron (NM_174854, intron 3 of 12)	59260.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	9.15	5.99	3.7	14.17	11.66	14.47	16.9	7.52	8.74
Merged-chr13-113337435-3	chr13	113337058	113338058	+	713.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	127899.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	10.87	10.6	7.4	10.12	7.0	1.61	8.45	4.86	1.25
Merged-chr12-17556969-2	chr12	17556472	17557472	+	713.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	12099.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.58	3.23	3.7	5.4	4.67	4.82	2.11	1.77	5.0
Merged-chr5-9071544-2	chr5	9071032	9072032	+	713.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	-29205.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	2.29	8.75	12.95	3.37	2.8	3.22	3.17	5.31	3.75
Merged-chrX-38452348-2	chrX	38451853	38452853	+	713.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	4107.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	10.3	12.9	0.0	14.17	4.2	11.25	14.79	7.96	7.49
Merged-chr2-145863306-3	chr2	145862762	145863762	+	713.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-39979.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	14.87	22.12	24.97	24.29	21.46	20.09	15.84	11.05	14.99
Merged-chr16-58509255-2	chr16	58508726	58509726	+	713.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 1 of 10)	intron (NM_001357433, intron 1 of 10)	14200.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	96.68	88.47	44.4	100.53	63.91	77.16	106.67	97.72	48.71
Merged-chr4-135875343-2	chr4	135874840	135875840	+	713.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1494.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	106.4	99.99	82.32	205.79	159.08	161.56	235.53	236.12	138.02
Merged-chr10-63236037-3	chr10	63235532	63236532	+	713.0722049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-7765.0	NM_030114	67345.0	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	8.01	7.83	20.35	9.45	3.27	13.66	21.12	7.52	13.74
Merged-chr11-102137790-3	chr11	102137288	102138288	+	713.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-7725.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	4.0	6.91	6.47	8.1	3.27	8.04	9.51	5.31	2.5
Merged-chr19-53259533-1	chr19	53259033	53260033	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4328.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	3.43	3.69	1.85	6.75	0.93	4.02	5.28	1.33	0.0
Merged-chr12-81549944-1	chr12	81549444	81550444	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17033.0	NM_001309848	105940408.0		NM_001309847	ENSMUSG00000021139	Gm20498	ARIP2a|Synj2bp-cox16	predicted gene 20498	protein-coding	4.0	8.29	8.32	2.02	2.33	1.61	3.17	0.88	2.5
Merged-chr1-53777906-1	chr1	53777406	53778406	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	ORR1F|LTR|ERVL-MaLR	7309.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	31.46	52.07	78.62	36.43	40.12	50.64	49.64	61.46	42.47
Merged-chr16-85112355-1	chr16	85111855	85112855	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 2 of 15)	intron (NM_001198825, intron 2 of 15)	61352.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	11.44	14.75	23.12	10.8	17.73	26.53	17.96	16.36	17.49
Merged-chr4-156200273-1	chr4	156199773	156200773	+	713.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015783, intron 1 of 1)	URR1A|DNA|hAT-Charlie	545.0	NM_015783	100038882.0	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	103.54	97.69	53.65	60.05	65.78	43.4	86.61	103.91	46.22
Merged-chr10-60261705-1	chr10	60261205	60262205	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15923.0	NM_001146123	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	191.64	144.69	108.22	185.55	137.15	145.49	227.08	151.22	88.06
Merged-chr11-106202287-1	chr11	106201787	106202787	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026009, intron 11 of 12)	intron (NM_026009, intron 11 of 12)	-8684.0	NM_001252449	72149.0	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	61.21	62.67	72.15	50.6	42.92	61.09	59.15	55.71	47.46
Merged-chr18-73693612-1	chr18	73693112	73694112	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008540, intron 1 of 11)	intron (NM_008540, intron 1 of 11)	10129.0	NM_008540	17128.0	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	8.58	1.84	1.85	3.37	3.73	4.82	1.06	3.54	4.37
Merged-chr2-36217791-2	chr2	36217287	36218287	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12639.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	93.82	96.3	138.74	88.39	54.11	106.9	144.7	114.08	74.94
Merged-chr14-21683031-2	chr14	21682531	21683531	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013826, intron 3 of 3)	intron (NM_001013826, intron 3 of 3)	31545.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.0	2.76	3.7	2.02	1.4	0.0	2.11	2.21	1.25
Merged-chr1-77044049-1	chr1	77043549	77044549	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	452719.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.29	3.69	0.0	5.4	4.67	6.43	4.22	5.31	10.62
Merged-chr4-63668504-2	chr4	63668009	63669009	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34088.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	3.43	3.23	1.85	3.37	3.27	6.43	3.17	2.21	6.25
Merged-chr9-85573935-2	chr9	85573443	85574443	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	175391.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	11.44	19.35	20.35	17.54	20.99	17.68	10.56	14.15	12.49
Merged-chr10-34036726-2	chr10	34036225	34037225	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162937)	promoter-TSS (NM_001162937)	-872.0	NM_001162937	692132.0	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l	trafficking protein particle complex 3 like	protein-coding	6.86	3.23	3.7	5.4	4.2	4.82	4.22	0.88	1.25
Merged-chr3-100765576-2	chr3	100765079	100766079	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-59880.0	NM_178594	242122.0	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	6.29	3.23	4.62	4.05	6.06	1.61	2.11	0.88	0.0
Merged-chr15-6436003-1	chr15	6435503	6436503	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 11 of 13)	intron (NM_001008702, intron 11 of 13)	-9330.0	NM_013485	12279.0	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	12.01	3.69	10.17	6.07	6.06	10.45	2.11	4.86	5.62
Merged-chrX-100511348-1	chrX	100510848	100511848	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008784, intron 5 of 5)	HAL1M8|LINE|L1	-13490.0	NM_001114084	668257.0	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	20.59	9.22	13.87	3.37	9.8	6.43	19.01	12.38	17.49
Merged-chr1-13531683-2	chr1	13531181	13532181	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58229.0	NM_028173	72265.0	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	2.29	6.45	0.0	4.72	2.33	0.0	1.06	0.44	2.5
Merged-chr19-5604066-3	chr19	5603565	5604565	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362372, intron 10 of 12)	intron (NM_001362372, intron 10 of 12)	2192.0	NM_026616	68209.0	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	20.02	11.06	10.17	10.8	4.67	16.08	28.52	26.97	39.35
Merged-chr2-120002263-1	chr2	120001763	120002763	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355293, intron 2 of 30)	intron (NM_001355293, intron 2 of 30)	-15254.0	NR_106125	102466842.0		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	12.01	8.75	12.02	12.14	8.86	14.47	10.56	8.84	8.74
Merged-chr2-11798404-1	chr2	11797904	11798904	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	20651.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	2.86	1.84	3.7	0.67	5.6	3.22	2.11	1.33	1.25
Merged-chr8-13641414-1	chr8	13640914	13641914	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	36173.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.0	4.61	5.55	8.77	12.6	25.72	6.34	3.1	7.49
Merged-chr2-101856345-2	chr2	101855835	101856835	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	RMER15|LTR|ERVL	-17355.0	NM_001110849	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.43	3.23	5.55	1.35	4.67	0.0	7.39	3.98	2.5
Merged-chr1-43910890-1	chr1	43910390	43911390	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MusHAL1|LINE|L1	-23104.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	40.62	51.61	36.07	39.81	34.52	32.96	35.91	48.64	29.35
Merged-chr15-34027290-3	chr15	34026727	34027727	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-55492.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	7.44	1.84	3.7	4.72	6.53	4.82	1.06	6.19	9.37
Merged-chr2-120574757-1	chr2	120574257	120575257	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009222, intron 1 of 7)	intron (NM_009222, intron 1 of 7)	7086.0	NM_009222	20619.0	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	69.22	95.38	82.32	64.1	42.92	47.42	98.23	101.26	59.95
Merged-chr9-14067673-1	chr9	14067173	14068173	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-208628.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	21.17	21.2	8.32	18.89	15.86	22.51	17.96	16.36	5.62
Merged-chr15-64163385-3	chr15	64162892	64163892	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 9 of 28)	L1MB5|LINE|L1	-102944.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	5.72	4.15	3.7	7.42	8.86	8.04	8.45	10.17	7.49
Merged-chr14-54715063-2	chr14	54714527	54715527	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2853.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	22.88	20.27	20.35	35.09	20.53	16.88	12.67	11.94	4.37
Merged-chr15-62360834-2	chr15	62360341	62361341	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141390.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	3.43	4.61	0.0	6.07	4.67	6.43	11.62	7.96	6.87
Merged-chr7-19179295-1	chr7	19178795	19179795	+	713.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347582, exon 2 of 22)	exon (NM_001347582, exon 2 of 22)	-1875.0	NM_001162996	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	5.15	2.76	0.0	0.67	1.87	6.43	9.51	3.54	1.25
Merged-chr17-87474408-1	chr17	87473908	87474908	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27473.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	0.57	3.23	3.7	8.77	5.13	0.0	5.28	1.77	4.37
Merged-chr6-100341965-1	chr6	100341465	100342465	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54607.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.58	2.76	0.0	3.37	0.93	6.43	3.17	2.65	5.0
Merged-chr6-31191177-3	chr6	31190686	31191686	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110470, intron 1 of 2)	LTR33C|LTR|ERVL	27288.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	65.79	79.72	55.5	78.94	58.78	56.27	88.72	81.36	43.09
Merged-chr4-13281573-2	chr4	13281088	13282088	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	374751.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	2.86	5.53	1.85	8.1	2.8	4.82	2.11	2.65	1.25
Merged-chr17-13055352-1	chr17	13054852	13055852	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3072.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	5.15	3.23	7.4	13.49	6.06	5.63	15.84	5.31	1.25
Merged-chr9-78429874-1	chr9	78429374	78430374	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173386)	TTS (NM_173386)	13363.0	NR_125721	214763.0	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	31.46	49.3	63.82	29.01	44.78	42.6	54.92	56.6	49.34
Merged-chr16-65423010-1	chr16	65422510	65423510	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97619.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	5.72	5.07	0.0	6.07	7.93	3.22	5.28	4.42	9.37
Merged-chr13-28457721-1	chr13	28457221	28458221	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	253152.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	2.86	2.76	1.85	6.07	3.27	4.82	4.22	0.88	3.75
Merged-chr6-113692920-1	chr6	113692420	113693420	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 11 of 11)	RMER17C-int|LTR|ERVK	-4130.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	10.87	7.83	1.85	6.75	5.6	12.06	10.56	3.98	15.61
Merged-chr4-53123657-1	chr4	53123157	53124157	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	36238.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	35.47	32.25	18.5	33.74	31.26	36.17	45.42	33.6	16.24
Merged-chr1-173452564-1	chr1	173452064	173453064	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	L2a|LINE|L2	31960.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	25.17	18.43	32.37	22.27	19.59	28.94	25.35	24.32	13.74
Merged-chr10-111130952-1	chr10	111130452	111131452	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33850.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	11.44	18.43	15.72	16.19	8.86	8.04	7.39	12.38	4.37
Merged-chr1-88211858-1	chr1	88211358	88212358	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201645)	promoter-TSS (NM_201645)	-101.0	NM_201645	394436.0	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	10.3	10.14	24.05	4.05	7.46	16.88	5.28	8.84	26.23
Merged-chr8-83081277-2	chr8	83080790	83081790	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-84062.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	31.46	66.35	43.47	51.95	73.71	77.16	55.98	56.16	59.95
Merged-chr1-172305401-1	chr1	172304901	172305901	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6966.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	10.3	3.69	3.7	11.47	5.6	4.82	3.17	3.54	4.37
Merged-chr2-164403031-2	chr2	164402545	164403545	+	713.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009036)	promoter-TSS (NM_009036)	-149.0	NM_009036	19668.0	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	3.43	0.46	0.0	3.37	2.33	1.61	3.17	1.33	1.25
Merged-chr5-35722953-1	chr5	35722453	35723453	+	713.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 2 of 17)	intron (NM_001359895, intron 2 of 17)	6323.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	5.15	3.23	3.7	10.12	3.73	12.06	12.67	0.88	11.24
Merged-chr8-18568737-3	chr8	18568255	18569255	+	712.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26376.0	NM_173189	244329.0	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge	microcephaly, primary autosomal recessive 1	protein-coding	6.86	2.76	1.85	6.07	1.4	8.04	2.11	3.98	2.5
Merged-chr15-36931639-3	chr15	36931135	36932135	+	712.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	75767.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	10.3	5.07	3.7	4.72	1.87	12.06	5.28	5.75	4.37
Merged-chr10-67984765-2	chr10	67984263	67985263	+	712.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359319, intron 1 of 11)	intron (NM_001359319, intron 1 of 11)	5193.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.72	1.84	1.85	4.05	1.87	0.0	2.11	1.77	5.0
Merged-chr8-110266098-2	chr8	110265589	110266589	+	712.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172916)	promoter-TSS (NM_172916)	-888.0	NM_172916	244653.0	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|672398|A830061H17|AC069308.21gm4|Gm9558|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	1.72	1.84	0.0	6.07	0.93	0.0	7.39	5.31	3.75
Merged-chr1-131238636-2	chr1	131238131	131239131	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018750, intron 1 of 5)	intron (NM_018750, intron 1 of 5)	6547.0	NM_001313731	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	4.0	4.15	2.77	2.7	2.8	3.22	5.28	4.42	5.0
Merged-chr15-53345583-2	chr15	53345086	53346086	+	712.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010162, exon 1 of 11)	5' UTR (NM_010162, exon 1 of 11)	597.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	106.97	122.57	102.67	84.34	104.96	112.53	78.16	69.42	80.56
Merged-chr6-3427288-2	chr6	3426796	3427796	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27725.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	7.44	16.13	3.7	10.12	6.53	20.9	19.01	9.73	18.74
Merged-chr8-90861730-2	chr8	90861224	90862224	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	32889.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	10.87	8.29	11.1	14.17	5.13	12.06	12.67	7.96	9.99
Merged-chr11-45734977-2	chr11	45734469	45735469	+	712.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73114.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	11.44	9.68	2.77	4.05	8.86	9.65	7.39	3.54	3.75
Merged-chr8-119446647-2	chr8	119446134	119447134	+	712.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_054095)	promoter-TSS (NM_054095)	-85.0	NM_054095	117148.0	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	4.0	0.92	0.0	0.67	2.33	4.82	1.06	1.33	3.75
Merged-chr19-5798961-4	chr19	5798525	5799525	+	712.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-3044.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	133.29	97.69	40.7	103.91	55.51	52.25	89.78	100.37	44.34
Merged-chr16-5474151-2	chr16	5473642	5474642	+	712.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-218186.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	9.15	10.6	0.92	6.07	4.67	4.02	3.17	1.77	6.87
Merged-chr2-84635833-3	chr2	84635333	84636333	+	712.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	13647.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	29.75	29.49	35.15	51.28	30.79	31.35	36.97	29.18	21.86
Merged-chr5-72554549-3	chr5	72554063	72555063	+	712.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153351, intron 3 of 21)	intron (NR_153351, intron 3 of 21)	5082.0	NM_001359837	100978.0	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	35.47	52.53	36.07	23.62	27.99	40.99	35.91	53.5	32.48
Merged-chr9-123951354-3	chr9	123950829	123951829	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17363.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	37.76	29.03	23.12	49.25	20.99	31.35	32.74	23.88	21.23
Merged-chr6-54939940-3	chr6	54939471	54940471	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 4 of 11)	intron (NM_001171007, intron 4 of 11)	31690.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	18.88	25.8	33.3	24.96	12.6	22.51	23.24	19.01	18.74
Merged-chr6-82772135-3	chr6	82771643	82772643	+	712.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	2311.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	37.76	42.39	29.6	38.46	43.85	38.58	107.73	93.74	57.46
Merged-chr9-124068318-2	chr9	124067838	124068838	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33845.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	33.18	59.9	57.35	51.95	55.98	82.79	81.33	45.99	60.58
Merged-chr5-147418927-2	chr5	147418433	147419433	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033625, intron 1 of 2)	intron (NR_033625, intron 1 of 2)	313.0	NR_033625	100039805.0	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	17.73	22.12	16.65	33.74	25.19	27.33	26.4	9.29	12.49
Merged-chr7-139434252-2	chr7	139433755	139434755	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	33761.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	9.72	15.21	12.95	18.89	13.06	18.49	11.62	18.13	13.12
Merged-chr8-120131328-3	chr8	120130826	120131826	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172286, intron 1 of 12)	intron (NM_172286, intron 1 of 12)	-13603.0	NM_001163760	234797.0	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	10.87	10.14	24.97	8.1	15.39	21.7	7.39	6.63	12.49
Merged-chrX-134143559-2	chrX	134143064	134144064	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	18364.0	NM_183319	331524.0	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	6.29	1.38	1.85	1.35	0.47	3.22	1.06	0.0	1.25
Merged-chr12-40082656-1	chr12	40082156	40083156	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009132, intron 5 of 13)	intron (NM_009132, intron 5 of 13)	-44669.0	NM_001039515	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	4.58	5.07	1.85	6.75	1.4	0.8	3.17	0.0	3.75
Merged-chr13-107826660-2	chr13	107826165	107827165	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	63399.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	52.63	40.55	19.42	44.53	34.99	40.19	49.64	59.69	29.35
Merged-chr12-51355473-2	chr12	51354974	51355974	+	712.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015099, intron 4 of 14)	MTD|LTR|ERVL-MaLR	7244.0	NM_001015099	217558.0	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	12.59	10.14	19.42	4.72	7.93	11.25	6.34	19.9	4.37
Merged-chr6-38875803-2	chr6	38875286	38876286	+	712.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	CpG	404.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	171.04	158.51	193.32	160.58	147.88	184.07	212.29	149.89	104.92
Merged-chr13-78043436-3	chr13	78042954	78043954	+	712.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163420, intron 8 of 8)	intron (NM_001163420, intron 8 of 8)	18552.0	NM_029315	75507.0	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	10.87	4.15	0.0	8.1	6.53	4.82	15.84	6.63	12.49
Merged-chr14-56777737-4	chr14	56777259	56778259	+	712.68335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025682, intron 1 of 8)	CpG	559.0	NM_001360420	66645.0	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	143.59	151.14	115.62	120.1	118.96	108.51	102.45	113.19	96.18
Merged-chr5-20470657-3	chr5	20470138	20471138	+	712.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 10 of 22)	RMER13A|LTR|ERVK	411486.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	1.72	6.45	5.55	2.02	1.4	0.0	2.11	0.44	1.25
Merged-chr1-153443871-1	chr1	153443371	153444371	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033162, intron 6 of 9)	B4A|SINE|B4	18662.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	6.29	8.75	7.4	6.75	6.53	16.08	8.45	7.96	5.0
Merged-chr3-86758776-1	chr3	86758276	86759276	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077688, intron 53 of 54)	intron (NM_001077688, intron 53 of 54)	162108.0	NM_001195499	70762.0	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	48.05	61.75	18.5	56.0	68.58	33.76	46.47	51.73	16.24
Merged-chr9-124440340-3	chr9	124439921	124440921	+	712.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16634.0	NR_015516	75135.0	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	14.87	10.14	34.22	20.24	6.53	8.04	17.96	16.8	19.36
Merged-chr6-24703729-1	chr6	24703229	24704229	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29516.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	17.73	10.6	4.62	23.62	32.66	22.51	8.45	6.63	6.25
Merged-chr15-43383210-1	chr15	43382710	43383710	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93826.0	NR_046064	100038728.0	Mm.244168	NR_046064	ENSMUSG00000072592	Gm10373	-	predicted gene 10373	ncRNA	18.88	10.6	4.62	14.84	4.67	12.86	10.56	4.86	3.75
Merged-chr10-43827456-1	chr10	43826956	43827956	+	712.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	1549.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	3.43	4.15	0.0	2.02	2.33	4.82	5.28	3.1	3.75
Merged-chr15-27647951-2	chr15	27647452	27648452	+	712.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-17259.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	14.3	11.52	9.25	8.77	6.06	8.04	11.62	10.61	11.87
Merged-chr14-31494152-3	chr14	31493659	31494659	+	712.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028932)	promoter-TSS (NM_028932)	599.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	154.45	120.26	68.45	187.57	154.41	89.22	146.81	172.89	49.96
Merged-chr1-86041042-3	chr1	86040548	86041548	+	712.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb-int|LTR|ERVL-MaLR	-4815.0	NM_001144993	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	7.44	2.3	9.25	7.42	7.0	11.25	12.67	13.71	9.37
Merged-chr15-53255964-3	chr15	53255450	53256450	+	712.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	90233.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.58	13.36	4.62	10.12	4.67	0.0	5.28	0.44	5.0
Merged-chr5-65401782-3	chr5	65401259	65402259	+	712.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024471, intron 7 of 10)	intron (NM_024471, intron 7 of 10)	10262.0	NM_001310612	79464.0	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	6.29	5.53	13.87	16.87	6.53	6.43	6.34	4.42	3.75
Merged-chr6-145710069-4	chr6	145709601	145710601	+	712.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94138.0	NM_009449	22147.0	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	16.59	11.52	7.4	35.76	41.52	26.53	8.45	10.17	5.62
Merged-chr8-69792849-3	chr8	69792364	69793364	+	712.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133224, intron 1 of 25)	intron (NM_133224, intron 1 of 25)	1701.0	NM_133224	170759.0	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	29.75	29.95	39.77	14.17	7.93	24.92	43.3	29.63	29.98
Merged-chr2-59976569-2	chr2	59976037	59977037	+	712.533325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 6 of 35)	intron (NM_001001182, intron 6 of 35)	-93931.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	124.14	121.19	37.92	105.26	118.49	69.13	117.24	149.89	35.6
Merged-chr17-50419077-1	chr17	50418577	50419577	+	712.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS4-int|LTR|ERV1	-90470.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	8.01	10.6	17.57	2.02	3.27	6.43	13.73	7.07	3.75
Merged-chr13-64344306-1	chr13	64343806	64344806	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26214.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	12.59	10.6	10.17	14.17	14.46	13.66	26.4	24.76	16.24
Merged-chr9-110635407-3	chr9	110634925	110635925	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106186)	TTS (NR_106186)	690.0	NR_106186	102466885.0		NR_106186	ENSMUSG00000099275	Mir8107	Gm27455|mmu-mir-8107	microRNA 8107	ncRNA	5.15	2.3	3.7	3.37	1.87	7.23	4.22	0.88	2.5
Merged-chr8-92998819-2	chr8	92998338	92999338	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009209, exon 14 of 14)	3' UTR (NM_009209, exon 14 of 14)	37791.0	NM_009209	20538.0	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	1.14	1.38	0.0	0.67	0.47	0.0	4.22	0.0	2.5
Merged-chr6-127264239-1	chr6	127263739	127264739	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43728.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	5.72	2.3	2.77	8.77	2.8	6.43	3.17	1.33	3.75
Merged-chr4-134082255-2	chr4	134081766	134082766	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162970, intron 12 of 19)	intron (NM_001162970, intron 12 of 19)	12807.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	2.29	1.38	0.0	4.05	1.4	1.61	0.0	1.77	6.25
Merged-chr6-92241365-2	chr6	92240875	92241875	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009426)	TTS (NM_009426)	3275.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	1.14	2.76	0.0	0.0	1.87	0.0	1.06	2.65	6.25
Merged-chr12-5226912-1	chr12	5226412	5227412	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	148770.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.43	2.3	5.55	4.05	4.67	4.82	4.22	5.31	1.25
Merged-chr14-31432964-1	chr14	31432464	31433464	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	3136.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	34.9	47.92	22.2	63.42	54.58	52.25	102.45	71.19	43.09
Merged-chr9-110623223-2	chr9	110622707	110623707	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026012, exon 2 of 5)	5' UTR (NM_026012, exon 2 of 5)	1186.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	22.88	17.05	33.3	17.54	11.2	15.27	17.96	25.65	18.11
Merged-chr2-147009990-2	chr2	147009476	147010476	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3023.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	23.45	13.82	14.8	16.19	13.06	16.08	22.18	19.46	18.11
Merged-chr15-78870007-3	chr15	78869507	78870507	+	712.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7183.0	NM_145929	106039.0	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	13.73	5.99	7.4	7.42	1.4	8.04	5.28	3.54	6.25
Merged-chr10-67189196-1	chr10	67188696	67189696	+	712.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242396, intron 1 of 24)	intron (NM_001242396, intron 1 of 24)	3446.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	28.03	27.19	13.87	24.96	27.99	9.65	16.9	33.16	7.49
Merged-chrX-159757353-3	chrX	159756884	159757884	+	712.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 1 of 16)	intron (NM_021389, intron 1 of 16)	48783.0	NR_110970	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	9.15	9.22	9.25	4.72	14.46	24.92	10.56	7.96	9.99
Merged-chr17-74880253-3	chr17	74879754	74880754	+	712.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-125275.0	NM_019919	268977.0	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	20.02	10.14	11.1	15.52	7.93	8.84	29.57	26.97	18.11
Merged-chr1-136676464-2	chr1	136675994	136676994	+	712.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6902.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	73.79	54.83	35.15	93.11	84.9	53.85	86.61	118.5	56.21
Merged-chr9-120601648-2	chr9	120601138	120602138	+	712.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24307.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.86	11.98	1.85	15.52	17.73	14.47	2.11	5.75	6.25
Merged-chr11-34080045-2	chr11	34079538	34080538	+	712.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 13 of 20)	intron (NM_010696, intron 13 of 20)	18516.0	NR_155520	76874.0	Mm.437529	NR_155520		4930469K13Rik	-	RIKEN cDNA 4930469K13 gene	ncRNA	12.01	17.51	23.12	10.12	5.13	10.45	14.79	12.82	11.87
Merged-chr10-81502833-3	chr10	81502330	81503330	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010304, exon 7 of 7)	3' UTR (NM_010304, exon 7 of 7)	-2693.0	NM_010102	13611.0	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	4.58	3.23	0.0	2.7	0.93	8.84	5.28	1.77	4.37
Merged-chr15-76534147-3	chr15	76533656	76534656	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4590.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	4.0	0.92	0.0	6.75	0.47	3.22	3.17	0.44	2.5
Merged-chr19-32495250-3	chr19	32494762	32495762	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010799, intron 3 of 4)	intron (NM_010799, intron 3 of 4)	9493.0	NM_010799	17330.0	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	33.18	25.34	14.8	19.57	23.79	15.27	46.47	57.04	28.73
Merged-chr2-120469489-1	chr2	120468989	120469989	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040608)	promoter-TSS (NR_040608)	-122.0	NR_040608	70933.0	Mm.444742	NR_040608		4931402G19Rik	-	RIKEN cDNA 4931402G19 gene	ncRNA	28.6	33.18	9.25	11.47	16.33	19.29	12.67	10.61	9.37
Merged-chr19-10184405-1	chr19	10183905	10184905	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146094, intron 1 of 11)	intron (NM_146094, intron 1 of 11)	1517.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	9.15	20.27	25.9	12.14	20.99	23.31	3.17	0.0	2.5
Merged-chr15-74933658-3	chr15	74933132	74934132	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21419.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	12.59	15.21	23.12	10.12	11.2	29.74	172.16	266.63	128.03
Merged-chr14-67860570-1	chr14	67860070	67861070	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105857)	promoter-TSS (NR_105857)	-825.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	13.16	11.98	21.27	12.82	10.73	24.11	7.39	2.21	11.24
Merged-chr4-63548694-3	chr4	63548194	63549194	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024173, intron 2 of 2)	intron (NM_024173, intron 2 of 2)	3929.0	NM_024173	66290.0	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	17.73	17.05	12.02	9.45	7.0	20.09	17.96	17.24	20.61
Merged-chr2-167980560-1	chr2	167980060	167981060	+	712.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001080708)	TTS (NM_001080708)	30033.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	8.58	2.76	1.85	2.7	3.27	9.65	8.45	0.0	7.49
Merged-chr10-13268311-3	chr10	13267747	13268747	+	712.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359294, intron 2 of 11)	GA-rich|Low_complexity|Low_complexity	56042.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	31.46	16.13	23.12	11.47	10.26	24.92	17.96	8.84	24.98
Merged-chr11-29801932-3	chr11	29801445	29802445	+	712.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 21 of 41)	MLT1E1A|LTR|ERVL-MaLR	23723.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	24.6	23.96	9.25	16.19	34.06	26.53	26.4	20.34	11.87
Merged-chr19-46041800-2	chr19	46041324	46042324	+	712.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	-2203.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	18.31	15.21	37.0	20.24	14.93	18.49	25.35	10.17	14.99
Merged-chr3-121500370-2	chr3	121499880	121500880	+	712.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145394, intron 9 of 14)	intron (NM_145394, intron 9 of 14)	31964.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.58	2.3	9.25	2.7	4.2	6.43	3.17	1.77	5.62
Merged-chr14-56375931-2	chr14	56375423	56376423	+	712.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138652, intron 10 of 22)	intron (NM_138652, intron 10 of 22)	10855.0	NM_138652	192113.0	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	4.58	3.69	1.85	2.02	1.87	0.0	3.17	1.33	3.12
Merged-chr10-127678145-3	chr10	127677663	127678663	+	712.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173732, intron 1 of 6)	intron (NM_173732, intron 1 of 6)	1098.0	NM_001113211	210035.0	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	17.73	14.75	27.75	19.57	12.6	8.84	12.67	18.57	13.12
Merged-chr11-5485927-3	chr11	5485438	5486438	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34703.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	64.64	56.68	48.1	41.16	49.92	52.25	82.38	76.94	39.97
Merged-chr2-14055227-3	chr2	14054706	14055706	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012396, intron 1 of 5)	CpG	829.0	NM_001012396	30963.0	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	10.87	3.23	2.77	12.14	6.06	16.08	10.56	4.42	3.75
Merged-chr19-29180559-3	chr19	29180058	29181058	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45279.0	NR_029778	724062.0		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	5.72	4.15	5.55	1.35	4.2	1.61	4.22	7.52	6.25
Merged-chr13-107449898-1	chr13	107449398	107450398	+	712.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19924.0	NR_045083	105120.0	Mm.417700	NR_045083	ENSMUSG00000114780	AI197445	-	expressed sequence AI197445	ncRNA	0.57	4.15	0.0	1.35	6.53	6.43	3.17	2.65	5.0
Merged-chr17-87149945-3	chr17	87149445	87150445	+	712.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42266.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	12.59	8.29	5.55	16.19	17.26	24.11	14.79	8.84	12.49
Merged-chr18-54908479-3	chr18	54907980	54908980	+	712.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	81700.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.86	18.89	22.2	8.77	8.86	13.66	10.56	4.42	13.74
Merged-chr1-135154614-3	chr1	135154102	135155102	+	712.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026823, intron 5 of 6)	intron (NM_026823, intron 5 of 6)	7768.0	NM_026823	68724.0	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	8.58	1.84	1.85	8.1	4.67	3.22	6.34	0.0	2.5
Merged-chr13-52980328-3	chr13	52979848	52980848	+	712.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017373, intron 1 of 1)	CpG	691.0	NM_017373	18030.0	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	17.73	10.14	4.62	20.92	6.53	12.06	33.8	11.05	11.24
Merged-chr19-11263174-2	chr19	11262692	11263692	+	712.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007641, intron 1 of 6)	(T)n|Simple_repeat|Simple_repeat	2959.0	NM_007641	12482.0	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	21.74	32.72	25.9	25.64	19.59	20.9	41.19	30.95	46.22
Merged-chr3-31104222-2	chr3	31103708	31104708	+	712.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039090, intron 2 of 6)	MTD|LTR|ERVL-MaLR	9150.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	34.9	40.09	49.95	37.11	28.92	44.21	60.2	72.07	44.97
Merged-chr13-119406265-2	chr13	119405767	119406767	+	712.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308506, intron 1 of 16)	intron (NM_001308506, intron 1 of 16)	2744.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	16.59	12.44	7.4	14.17	12.6	14.47	20.07	16.36	12.49
Merged-chr10-75872903-2	chr10	75872343	75873343	+	712.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12G|LTR|ERVK	-12593.0	NM_010798	17319.0	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	8.58	5.99	3.7	14.17	4.67	12.86	14.79	5.31	10.62
Merged-chr5-90907766-3	chr5	90907208	90908208	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3809.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	9.72	13.36	14.8	16.19	10.26	12.86	7.39	7.96	3.75
Merged-chr18-36286277-3	chr18	36285817	36286817	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	5155.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	112.69	99.99	78.62	72.87	68.11	53.05	101.39	81.8	51.84
Merged-chr3-8767635-3	chr3	8767124	8768124	+	712.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-100586.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	24.03	26.26	1.85	68.15	49.45	36.17	26.4	14.59	6.25
Merged-chr7-30181547-3	chr7	30181078	30182078	+	712.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2593.0	NM_009944	12865.0	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	5.15	6.91	0.0	2.7	5.6	6.43	2.11	3.98	2.5
Merged-chr6-85239234-1	chr6	85238734	85239734	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	51303.0	NM_010131	13796.0	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	1.14	0.46	1.85	3.37	2.33	3.22	1.06	0.88	3.75
Merged-chr7-31195493-1	chr7	31194993	31195993	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	33135.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	5.72	3.69	11.1	9.45	9.33	6.43	8.45	0.88	13.74
Merged-chr3-144604412-1	chr3	144603912	144604912	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2C2|LTR|ERVL	33985.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.43	4.61	3.7	5.4	5.6	11.25	6.34	8.4	8.74
Merged-chr8-125533935-1	chr8	125533435	125534435	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	35928.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	6.29	5.99	9.25	8.1	5.13	11.25	14.79	8.84	1.25
Merged-chr10-111992761-1	chr10	111992261	111993261	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028608, intron 2 of 5)	intron (NM_028608, intron 2 of 5)	4503.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	7.44	10.6	15.72	11.47	11.66	22.51	5.28	13.71	10.62
Merged-chr10-17565440-2	chr10	17564935	17565935	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157793.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	13.16	11.06	1.85	12.14	9.33	9.65	9.51	7.07	7.49
Merged-chr6-89282272-1	chr6	89281772	89282772	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	L1M4|LINE|L1	3453.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	40.04	42.39	62.9	52.63	58.31	90.02	55.98	51.29	63.08
Merged-chr9-56259979-2	chr9	56259502	56260502	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172924, exon 4 of 7)	exon (NM_172924, exon 4 of 7)	-98932.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	31.46	42.39	21.27	48.58	43.85	36.97	104.56	126.02	57.46
Merged-chr3-104683143-1	chr3	104682643	104683643	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44479.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	2.86	4.15	1.85	3.37	0.93	0.0	0.0	0.0	3.12
Merged-chr2-59396876-1	chr2	59396376	59397376	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10194.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	10.3	15.67	16.65	20.92	13.53	36.17	15.84	12.38	10.62
Merged-chr11-105927183-1	chr11	105926683	105927683	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_181071, exon 26 of 26)	3' UTR (NM_181071, exon 26 of 26)	17304.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	8.01	1.84	1.85	8.1	2.33	3.22	2.11	1.77	0.0
Merged-chrX-144231624-1	chrX	144231124	144232124	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66166.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	3.43	6.91	1.85	4.72	9.8	0.8	5.28	2.65	1.25
Merged-chr17-40875754-2	chr17	40875252	40876252	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027834, exon 2 of 2)	3' UTR (NM_027834, exon 2 of 2)	4806.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	14.3	14.28	19.42	3.37	3.73	1.61	17.96	4.86	6.25
Merged-chr10-89776317-1	chr10	89775817	89776817	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029166, intron 4 of 20)	intron (NM_029166, intron 4 of 20)	31326.0	NM_029166	75089.0	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	6.29	3.23	0.0	3.37	9.33	2.41	3.17	11.5	6.25
Merged-chr16-29944731-1	chr16	29944231	29945231	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34393.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	79.52	82.02	64.75	72.19	58.31	64.3	88.72	69.42	56.21
Merged-chr9-105494097-1	chr9	105493597	105494597	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359822, intron 2 of 28)	intron (NM_001359822, intron 2 of 28)	1036.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	8.01	35.02	53.65	18.89	32.19	32.96	38.02	49.52	27.48
Merged-chr18-65707408-1	chr18	65706908	65707908	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177028, exon 2 of 15)	exon (NM_177028, exon 2 of 15)	9140.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	12.59	13.82	9.25	12.14	7.46	9.65	5.28	6.19	3.75
Merged-chr4-15149124-1	chr4	15148624	15149624	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178617)	promoter-TSS (NM_178617)	7.0	NM_178617	69352.0	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	7.44	0.46	0.0	1.35	1.4	0.8	0.0	3.1	3.75
Merged-chr15-86272598-1	chr15	86272098	86273098	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 4 of 12)	MTD|LTR|ERVL-MaLR	-5077.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	131.0	152.52	113.77	168.0	185.67	99.67	111.96	118.06	70.57
Merged-chr10-84146316-2	chr10	84145818	84146818	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-45621.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	15.45	12.9	17.57	9.45	7.0	8.84	6.34	10.17	6.87
Merged-chr10-87812835-1	chr10	87812335	87813335	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45430.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	17.16	9.22	5.55	16.19	7.93	19.29	9.51	9.73	3.75
Merged-chr5-35758482-1	chr5	35757982	35758982	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177678, intron 1 of 19)	CpG	602.0	NM_001177698	231148.0	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	5.15	6.91	10.17	18.22	7.0	5.63	10.56	6.19	9.99
Merged-chr10-84409452-1	chr10	84408952	84409952	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	31019.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	91.53	96.3	52.72	58.03	66.24	51.44	74.99	53.06	49.96
Merged-chr5-125349875-1	chr5	125349375	125350375	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D7|SINE|Alu	-8781.0	NM_001205083	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	8.58	6.45	14.8	8.77	3.73	9.65	14.79	8.4	6.25
Merged-chr1-165606279-1	chr1	165605779	165606779	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 2 of 5)	intron (NM_001083897, intron 2 of 5)	28262.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	12.01	4.61	0.0	6.75	5.6	12.86	13.73	10.17	3.75
Merged-chr17-69076477-3	chr17	69076010	69077010	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	CpG	833.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	8.01	5.53	3.7	6.07	1.4	1.61	6.34	3.54	2.5
Merged-chr11-87212494-3	chr11	87211988	87212988	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197987, intron 22 of 23)	intron (NM_197987, intron 22 of 23)	85413.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	12.01	18.43	12.95	16.19	22.39	18.49	17.96	12.82	24.98
Merged-chr8-86825740-1	chr8	86825240	86826240	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59518.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.29	2.76	5.55	11.47	4.2	4.82	6.34	1.77	2.5
Merged-chr7-121070734-1	chr7	121070234	121071234	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030691, exon 2 of 6)	exon (NM_030691, exon 2 of 6)	3796.0	NM_030691	80719.0	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	12.01	11.98	21.27	12.82	8.4	16.08	13.73	9.29	16.86
Merged-chr4-123748775-1	chr4	123748275	123749275	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023423, intron 1 of 4)	B1F|SINE|Alu	1524.0	NM_023423	68050.0	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	52.63	70.5	50.87	54.65	45.25	69.93	66.54	93.74	31.85
Merged-chr11-6680030-4	chr11	6679577	6680577	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19841.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	21.17	15.21	17.57	30.36	8.86	34.56	5.28	6.19	9.99
Merged-chr9-119976645-1	chr9	119976145	119977145	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357562, intron 2 of 4)	intron (NM_001357562, intron 2 of 4)	6378.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	24.6	15.67	22.2	16.19	11.66	8.04	28.52	15.92	10.62
Merged-chr14-103762456-2	chr14	103761960	103762960	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63028.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	4.0	3.23	12.02	13.49	11.66	9.65	6.34	4.42	5.0
Merged-chr6-99187611-1	chr6	99187111	99188111	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	78904.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	10.87	8.29	3.7	8.1	8.86	12.86	12.67	7.07	3.12
Merged-chr3-146121790-1	chr3	146121290	146122290	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134160)	promoter-TSS (NM_134160)	-1.0	NM_134160	171166.0	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	4.0	2.3	4.62	2.7	3.27	1.61	4.22	1.77	3.12
Merged-chr18-17723840-1	chr18	17723340	17724340	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-142850.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	5.15	3.69	11.1	12.82	5.6	16.08	1.06	3.98	5.0
Merged-chr14-76914010-1	chr14	76913510	76914510	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122607.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	4.0	5.53	3.7	7.42	3.73	4.82	1.06	0.44	1.25
Merged-chr4-8823343-1	chr4	8822843	8823843	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 7 of 36)	intron (NM_001355382, intron 7 of 36)	72019.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	5.72	3.69	8.32	7.42	17.26	21.7	6.34	7.07	3.75
Merged-chr2-92017196-1	chr2	92016696	92017696	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	6974.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	12.01	7.37	4.62	4.72	5.13	4.82	1.06	3.54	2.5
Merged-chr16-74411674-1	chr16	74411174	74412174	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175549, exon 1 of 28)	5' UTR (NM_175549, exon 1 of 28)	151.0	NM_001358494	268902.0	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	2.29	0.46	3.7	2.7	1.4	4.02	0.0	0.44	1.25
Merged-chr3-96148133-3	chr3	96147637	96148637	+	712.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025613, intron 7 of 12)	intron (NM_001025613, intron 7 of 12)	-13833.0	NM_181409	194126.0	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	5.72	6.45	1.85	6.07	9.33	8.04	5.28	4.42	5.62
Merged-chr14-21811506-2	chr14	21810992	21811992	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20069.0	NM_011695	22334.0	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	4.58	3.69	1.85	2.7	3.27	4.02	3.17	1.77	14.36
Merged-chr3-9696752-2	chr3	9696235	9697235	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053182, intron 6 of 7)	intron (NM_053182, intron 6 of 7)	-86650.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.86	3.69	0.92	10.8	5.13	12.86	4.22	5.31	3.75
Merged-chr1-46022440-1	chr1	46021940	46022940	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037691, intron 3 of 3)	intron (NR_037691, intron 3 of 3)	7997.0	NR_037690	212225.0	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	6.29	2.3	9.25	2.7	4.67	3.22	3.17	2.21	1.87
Merged-chr13-74597204-1	chr13	74596704	74597704	+	712.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42649.0	NM_030711	80898.0	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	2.86	3.69	7.4	2.7	2.33	1.61	2.11	3.1	3.12
Merged-chr16-43405281-2	chr16	43404783	43405783	+	712.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	MIR|SINE|MIR	14913.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	6.29	5.99	0.0	5.4	7.0	2.41	4.22	5.31	3.75
Merged-chr11-80154878-4	chr11	80154342	80155342	+	711.9375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 1 of 10)	intron (NM_172133, intron 1 of 10)	680.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	163.04	143.3	177.59	149.11	160.48	185.68	211.24	186.59	126.15
Merged-chr17-87263965-2	chr17	87263469	87264469	+	711.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139295, intron 1 of 3)	7SK|RNA|RNA	1978.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	81.23	58.52	77.7	74.89	70.44	63.5	108.79	80.92	42.47
Merged-chr5-31049472-2	chr5	31048943	31049943	+	711.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177621)	promoter-TSS (NM_001177621)	-519.0	NM_001177622	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	54.35	86.17	84.17	61.4	72.78	77.16	76.05	80.47	43.09
Merged-chr2-151968009-3	chr2	151967497	151968497	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_035478)	promoter-TSS (NR_035478)	-380.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	30.32	46.54	37.0	20.92	28.92	43.4	73.93	85.78	31.85
Merged-chr8-68175277-3	chr8	68174799	68175799	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	-101229.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.72	10.6	5.55	23.62	5.6	15.27	13.73	5.31	11.24
Merged-chr6-143079294-2	chr6	143078774	143079774	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362118, intron 6 of 25)	intron (NM_001362118, intron 6 of 25)	20878.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	98.39	134.09	49.95	84.34	86.77	55.46	101.39	123.36	71.82
Merged-chr9-120133617-3	chr9	120133099	120134099	+	711.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3165.0	NR_002902	104433.0	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	12.59	14.75	11.1	11.47	6.53	6.43	8.45	5.75	8.74
Merged-chr3-146564518-3	chr3	146564043	146565043	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32606.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	6.86	4.15	1.85	9.45	2.33	1.61	2.11	3.98	2.5
Merged-chr5-142910382-3	chr5	142909893	142910893	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3639.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	95.53	127.64	141.52	84.34	69.98	147.9	116.18	156.97	101.8
Merged-chr6-91677558-3	chr6	91677071	91678071	+	711.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6496.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	9.15	7.37	7.4	6.07	7.0	5.63	5.28	4.42	0.0
Merged-chr10-37280057-2	chr10	37279556	37280556	+	711.775024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-141130.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	2.29	4.15	11.1	11.47	9.33	4.82	6.34	8.4	3.12
Merged-chr3-84686985-2	chr3	84686491	84687491	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177260, intron 3 of 6)	intron (NM_177260, intron 3 of 6)	20799.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	9.15	6.91	5.55	7.42	0.93	1.61	7.39	3.98	0.0
Merged-chr10-14197396-2	chr10	14196879	14197879	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	231000.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.58	4.15	1.85	8.77	5.6	6.43	8.45	5.31	3.75
Merged-chr7-68282797-2	chr7	68282280	68283280	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013811, intron 1 of 8)	intron (NM_001013811, intron 1 of 8)	-6186.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	6.86	14.28	3.7	12.14	7.93	1.61	11.62	2.65	3.75
Merged-chr10-26322902-2	chr10	26322392	26323392	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359255, intron 12 of 21)	intron (NM_001359255, intron 12 of 21)	51180.0	NM_001359255	237339.0	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	L3MBTL3 histone methyl-lysine binding protein	protein-coding	22.88	31.33	22.2	34.41	34.52	25.72	26.4	41.12	21.23
Merged-chr3-58372582-2	chr3	58372069	58373069	+	711.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42151.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	9.15	4.61	3.7	16.87	8.86	6.43	5.28	1.77	3.12
Merged-chr17-15376487-2	chr17	15375982	15376982	+	711.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-659.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	4.0	0.92	9.25	0.67	1.87	0.8	4.22	0.88	2.5
Merged-chr17-57363025-3	chr17	57362504	57363504	+	711.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 2 of 22)	RLTR22_Mur|LTR|ERVK	4318.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	20.59	10.14	22.2	11.47	11.66	19.29	15.84	11.5	10.62
Merged-chr2-148082488-1	chr2	148081988	148082988	+	711.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35519.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.29	0.92	0.0	2.7	2.8	0.0	5.28	1.33	0.0
Merged-chr4-126257297-3	chr4	126256811	126257811	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144941)	promoter-TSS (NM_144941)	-992.0	NM_001145970	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	66.93	63.13	49.02	53.98	34.99	61.09	84.49	83.13	96.8
Merged-chr8-11419871-3	chr8	11419385	11420385	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009932, intron 20 of 47)	intron (NM_009932, intron 20 of 47)	-58044.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	2.86	5.07	0.0	4.72	0.93	0.8	2.11	0.0	6.25
Merged-chr13-45904796-3	chr13	45904289	45905289	+	711.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	60202.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	33.75	43.31	61.05	42.51	33.12	53.05	22.18	36.26	26.23
Merged-chr13-95843056-1	chr13	95842556	95843556	+	711.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	MIRc|SINE|MIR	48866.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	5.15	6.91	11.1	3.37	4.2	6.43	21.12	20.34	11.24
Merged-chr1-91523924-1	chr1	91523424	91524424	+	711.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028718, intron 13 of 14)	intron (NM_028718, intron 13 of 14)	-16641.0	NM_001039126	65247.0	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	5.15	2.76	1.85	2.02	2.8	4.82	5.28	2.65	2.5
Merged-chr11-69037406-2	chr11	69036910	69037910	+	711.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8227.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	32.61	53.45	33.3	22.94	23.79	33.76	45.42	51.73	20.61
Merged-chr7-98838051-2	chr7	98837560	98838560	+	711.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285795)	promoter-TSS (NM_001285795)	-785.0	NM_009519	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.15	0.92	0.0	5.4	2.8	1.61	1.06	4.86	2.5
Merged-chr6-13837105-3	chr6	13836566	13837566	+	711.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 4 of 4)	5' UTR (NM_001330666, exon 4 of 4)	2876.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	10.87	5.07	12.02	10.12	5.6	8.04	10.56	3.98	12.49
Merged-chr10-5807735-2	chr10	5807236	5808236	+	711.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	27.46	27.19	27.75	29.01	24.72	15.27	24.29	19.46	19.98
Merged-chr18-23495909-1	chr18	23495409	23496409	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361217, intron 2 of 20)	intron (NM_001361217, intron 2 of 20)	-1573.0	NM_001361215	13527.0	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	1.72	4.15	1.85	0.67	1.87	8.04	2.11	1.33	1.25
Merged-chr1-134066314-1	chr1	134065814	134066814	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	12841.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	95.53	88.01	62.9	85.01	76.97	79.58	68.65	66.33	62.45
Merged-chr1-61351034-3	chr1	61350536	61351536	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27396.0	NR_040483	77341.0	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	4.0	5.07	7.4	19.57	4.2	10.45	5.28	4.86	8.12
Merged-chr18-36711192-1	chr18	36710692	36711692	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20B3|LTR|ERVK	-15267.0	NM_172831	240216.0	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	8.01	8.75	11.1	11.47	2.8	7.23	4.22	3.54	0.0
Merged-chr5-34238675-2	chr5	34238187	34239187	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 2 of 12)	L1M4|LINE|L1	49637.0	NM_001015039	231125.0	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	4.58	5.07	7.4	22.27	14.0	7.23	3.17	9.73	3.75
Merged-chr2-6048120-1	chr2	6047620	6048620	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081132, intron 19 of 21)	intron (NM_001081132, intron 19 of 21)	82065.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	22.88	26.26	12.95	19.57	18.66	30.54	36.97	31.39	17.49
Merged-chr15-55308772-2	chr15	55308357	55309357	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	1107.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.43	1.38	2.77	2.7	0.47	4.82	3.17	1.77	1.25
Merged-chr15-25986421-2	chr15	25985875	25986875	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144523, intron 1 of 5)	MLT1A1|LTR|ERVL-MaLR	2009.0	NM_144523	52521.0	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	37.18	23.96	15.72	27.66	13.06	20.09	24.29	18.57	18.74
Merged-chr10-77621692-2	chr10	77621202	77622202	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019803)	promoter-TSS (NM_019803)	-619.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	236.26	262.19	219.21	250.99	218.33	217.83	210.18	263.97	146.76
Merged-chr4-133250833-2	chr4	133250336	133251336	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016693, intron 22 of 28)	CpG	10018.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	8.58	1.84	9.25	0.67	2.8	0.0	3.17	2.21	9.37
Merged-chr11-113778053-2	chr11	113777563	113778563	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GGCTG)n|Simple_repeat|Simple_repeat	-26248.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	5.15	2.3	3.7	8.1	2.8	5.63	12.67	7.07	8.74
Merged-chr2-167961244-2	chr2	167960758	167961758	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	28931.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	106.97	113.35	72.15	116.73	118.03	100.47	61.26	97.28	48.71
Merged-chr1-131085350-2	chr1	131084777	131085777	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	PB1D7|SINE|Alu	12566.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	117.27	123.49	108.22	130.22	118.96	124.59	139.42	149.01	95.55
Merged-chr15-3340078-2	chr15	3339581	3340581	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001048178, intron 6 of 8)	intron (NM_001048178, intron 6 of 8)	-36555.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	5.72	5.53	6.47	5.4	5.13	7.23	1.06	0.88	5.62
Merged-chr11-32666608-2	chr11	32666098	32667098	+	711.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271349, intron 1 of 11)	intron (NM_001271349, intron 1 of 11)	24043.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	8.58	7.37	5.55	4.72	2.33	2.41	2.11	6.19	12.49
Merged-chr2-94264684-2	chr2	94264201	94265201	+	711.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3302.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	5.72	1.38	7.4	6.07	3.73	4.02	13.73	8.84	6.25
Merged-chr9-124090658-2	chr9	124090165	124091165	+	711.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11518.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	34.32	40.55	46.25	27.66	25.19	34.56	29.57	40.24	41.84
Merged-chr7-132932196-3	chr7	132931695	132932695	+	711.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207302, intron 1 of 9)	intron (NM_207302, intron 1 of 9)	1053.0	NM_001362198	360216.0	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	148.73	193.99	140.59	138.32	150.68	107.71	141.53	167.14	116.79
Merged-chr2-150859891-3	chr2	150859411	150860411	+	711.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	L1ME1|LINE|L1	-17341.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	36.61	45.62	25.9	38.46	33.59	44.21	23.24	47.75	28.73
Merged-chr15-83086100-3	chr15	83085612	83086612	+	711.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14093.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	1.14	2.3	0.0	1.35	2.33	0.0	1.06	0.0	1.25
Merged-chr6-108468097-2	chr6	108467595	108468595	+	711.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-21648.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	14.3	10.6	9.25	16.87	17.26	17.68	29.57	19.01	6.25
Merged-chr4-63283466-1	chr4	63282966	63283966	+	711.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025685, intron 22 of 60)	Charlie1b|DNA|hAT-Charlie	26615.0	NR_030477	735262.0		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	3.43	2.76	1.85	3.37	2.8	3.22	5.28	6.63	5.0
Merged-chr1-51789532-2	chr1	51789042	51790042	+	711.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 13 of 29)	intron (NM_010863, intron 13 of 29)	126436.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.86	0.92	0.0	3.37	3.73	6.43	6.34	1.77	1.25
Merged-chr5-38309091-2	chr5	38308603	38309603	+	711.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10406.0	NM_013503	13492.0	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	2.86	1.84	0.0	1.35	0.93	8.04	6.34	1.77	4.37
Merged-chr14-77896181-1	chr14	77895681	77896681	+	711.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8058.0	NM_178825	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	10.87	6.45	1.85	12.82	5.6	4.02	17.96	9.73	13.12
Merged-chr16-50201789-1	chr16	50201289	50202289	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 15 of 16)	intron (NM_027444, intron 15 of 16)	-128937.0	NR_045935	224180.0	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	5.15	1.84	1.85	5.4	1.87	1.61	1.06	1.33	0.0
Merged-chr15-101283377-3	chr15	101282867	101283867	+	711.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-934.0	NM_026566	68118.0	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	26.89	52.53	13.87	50.6	39.65	19.29	70.76	71.63	21.23
Merged-chr13-96586502-1	chr13	96586002	96587002	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023420, intron 3 of 17)	ORR1D1|LTR|ERVL-MaLR	43767.0	NM_023420	68018.0	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	14.87	7.37	5.55	8.77	7.93	8.04	6.34	7.52	5.0
Merged-chr9-85343189-1	chr9	85342689	85343689	+	711.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16039.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	19.45	28.11	22.2	21.59	21.46	40.99	29.57	30.95	33.72
Merged-chr7-107047779-3	chr7	107047269	107048269	+	711.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11633.0	NM_147034	259036.0	Mm.377801	NM_147034	ENSMUSG00000073898	Olfr713	MOR263-1|P3	olfactory receptor 713	protein-coding	12.01	13.36	1.85	8.1	8.86	9.65	6.34	4.42	5.0
Merged-chr3-87909658-2	chr3	87909169	87910169	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331051, intron 1 of 6)	intron (NM_001331051, intron 1 of 6)	2819.0	NM_001331052	15191.0	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	33.18	27.65	12.95	37.78	27.52	41.8	45.42	43.33	31.85
Merged-chr13-8744726-2	chr13	8744241	8745241	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110345, intron 8 of 10)	intron (NR_110345, intron 8 of 10)	126303.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	4.58	2.76	3.7	2.02	2.33	0.0	2.11	1.33	2.5
Merged-chr18-75943725-2	chr18	75943218	75944218	+	711.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	MLT1A0|LTR|ERVL-MaLR	-115608.0	NM_001357506	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.14	1.38	0.0	2.02	2.33	4.82	1.06	6.63	3.75
Merged-chr2-122150613-4	chr2	122150135	122151135	+	711.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2948.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	64.07	50.23	44.4	32.39	25.66	24.92	61.26	58.81	29.35
Merged-chr11-62555303-4	chr11	62554756	62555756	+	711.1875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3525.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	23.45	20.27	19.42	22.27	11.66	24.11	17.96	10.17	12.49
Merged-chr17-28894536-3	chr17	28894032	28895032	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK10C-int|LTR|ERVK	-10733.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	5.72	16.13	5.55	8.77	5.13	8.04	4.22	3.98	13.74
Merged-chr2-164760606-3	chr2	164760119	164761119	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133763, intron 8 of 12)	MTD|LTR|ERVL-MaLR	-9310.0	NM_026785	68612.0	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	15.45	10.6	12.02	13.49	7.93	25.72	16.9	16.8	17.49
Merged-chr7-74665069-3	chr7	74664571	74665571	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110291.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	6.86	2.3	5.55	2.02	4.2	4.82	4.22	3.54	3.75
Merged-chr10-81523155-3	chr10	81522674	81523674	+	711.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	ID_B1|SINE|B4	1051.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	32.04	25.8	27.75	56.0	43.39	45.01	94.0	74.28	18.11
Merged-chr18-5124864-2	chr18	5124364	5125364	+	711.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40867.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	34.9	38.71	57.35	41.16	31.26	57.87	44.36	22.99	38.72
Merged-chr3-98019512-2	chr3	98019013	98020013	+	711.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	5975.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	5.72	5.07	9.25	3.37	6.53	7.23	8.45	7.07	9.99
Merged-chr19-6015345-5	chr19	6014963	6015963	+	711.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007600)	promoter-TSS (NM_007600)	-216.0	NM_007600	12333.0	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	35.47	36.86	50.87	43.18	41.05	47.42	42.25	28.3	11.87
Merged-chr7-16931055-3	chr7	16930522	16931522	+	711.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6990.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	1.72	4.15	0.92	2.7	2.8	2.41	4.22	0.88	0.0
Merged-chr11-79703648-3	chr11	79703131	79704131	+	711.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8338.0	NR_029579	387188.0		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	73.22	78.33	46.25	69.5	52.25	51.44	64.43	68.09	37.47
Merged-chr16-10488020-2	chr16	10487522	10488522	+	711.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007575)	promoter-TSS (NM_007575)	-156.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	31.46	29.03	32.37	17.54	14.0	12.06	32.74	33.6	26.85
Merged-chr4-24617061-3	chr4	24616556	24617556	+	711.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033531, exon 10 of 10)	3' UTR (NM_001033531, exon 10 of 10)	120605.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	11.44	21.2	13.87	18.89	19.13	16.08	10.56	9.29	7.49
Merged-chr2-166516481-2	chr2	166515993	166516993	+	711.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-48029.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	8.58	4.15	5.55	3.37	6.06	6.43	22.18	21.22	6.25
Merged-chr11-120355769-1	chr11	120355269	120356269	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5765.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	21.74	12.9	15.72	16.87	14.46	25.72	19.01	9.29	11.24
Merged-chr8-4237915-1	chr8	4237415	4238415	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-825.0	NM_011944	26400.0	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	70.36	77.41	80.47	50.6	56.45	90.02	68.65	68.98	59.95
Merged-chr8-115701943-1	chr8	115701443	115702443	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4951.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	28.6	53.45	30.52	41.83	52.72	56.27	52.81	54.83	46.84
Merged-chr6-121053974-1	chr6	121053474	121054474	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	-10490.0	NR_138098	100043793.0	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	4.0	1.38	5.55	2.02	1.87	1.61	8.45	0.44	3.75
Merged-chr14-76279665-1	chr14	76279165	76280165	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	28203.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	9.72	3.23	5.55	9.45	9.8	6.43	12.67	8.4	5.62
Merged-chr2-119210402-1	chr2	119209902	119210902	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028054, intron 1 of 10)	intron (NM_028054, intron 1 of 10)	-1607.0	NM_139139	69408.0	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	13.73	12.9	18.5	9.45	1.87	10.45	9.51	5.31	3.12
Merged-chr2-93445432-1	chr2	93444932	93445932	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001136055, intron 1 of 9)	intron (NM_001136055, intron 1 of 9)	7240.0	NM_001271462	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	4.58	4.15	10.17	5.4	2.8	4.82	2.11	7.96	3.75
Merged-chr17-30010618-1	chr17	30010118	30011118	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151443, intron 1 of 4)	intron (NR_151443, intron 1 of 4)	5579.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	32.61	27.19	19.42	39.81	20.06	27.33	45.42	22.99	23.73
Merged-chr2-25115455-1	chr2	25114955	25115955	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-20250.0	NM_172204	241275.0	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	3.43	0.46	7.4	4.05	1.4	6.43	2.11	1.77	5.0
Merged-chr11-120369819-2	chr11	120369349	120370349	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027980, exon 10 of 10)	3' UTR (NM_027980, exon 10 of 10)	8315.0	NM_172802	238021.0	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	10.3	1.84	5.55	0.0	1.4	4.82	1.06	1.77	0.62
Merged-chr12-69419794-1	chr12	69419294	69420294	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47644.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	2.86	4.15	1.85	10.8	7.93	4.02	8.45	3.98	2.5
Merged-chrX-168913700-1	chrX	168913200	168914200	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	intron (NM_009707, intron 1 of 12)	118601.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.57	0.92	3.7	0.0	2.8	1.61	3.17	1.33	4.37
Merged-chr15-88523641-2	chr15	88523135	88524135	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76667.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	12.59	12.44	17.57	11.47	4.2	4.02	19.01	8.84	10.62
Merged-chr11-116647936-1	chr11	116647436	116648436	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030206, intron 3 of 3)	intron (NM_030206, intron 3 of 3)	6377.0	NM_030206	114886.0	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	29.75	28.11	29.6	34.41	27.06	39.39	19.01	11.05	6.87
Merged-chr1-155912077-2	chr1	155911594	155912594	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039184, intron 17 of 37)	intron (NM_001039184, intron 17 of 37)	61161.0	NM_001039184	74081.0	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	6.86	6.45	3.7	5.4	11.2	0.8	1.06	6.19	8.74
Merged-chr6-112721694-1	chr6	112721194	112722194	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_080448, exon 22 of 22)	3' UTR (NM_080448, exon 22 of 22)	-25024.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	6.29	5.99	14.8	10.12	7.0	11.25	6.34	1.77	14.99
Merged-chr10-120064662-1	chr10	120064162	120065162	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358809, intron 22 of 23)	intron (NM_001358809, intron 22 of 23)	48303.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	1.72	2.3	0.0	2.02	3.27	3.22	2.11	1.77	0.0
Merged-chr7-45362891-1	chr7	45362391	45363391	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029741, intron 1 of 29)	intron (NM_029741, intron 1 of 29)	-3270.0	NR_015480	50994.0	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.57	2.3	0.0	0.67	1.87	3.22	2.11	0.44	0.0
Merged-chr1-127214400-1	chr1	127213900	127214900	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	B4A|SINE|B4	9414.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	11.44	8.75	3.7	6.75	7.46	6.43	19.01	19.9	7.49
Merged-chr2-84961544-2	chr2	84961048	84962048	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18913.0	NM_008920	19074.0	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	9.15	9.68	7.4	10.12	4.67	4.82	11.62	7.52	7.49
Merged-chr6-119500112-1	chr6	119499612	119500612	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	20444.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	5.15	5.07	9.25	6.07	1.87	9.65	3.17	2.21	2.5
Merged-chr9-65001385-3	chr9	65000948	65001948	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021345, intron 5 of 10)	intron (NM_021345, intron 5 of 10)	20269.0	NM_021345	57874.0	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	66.36	67.27	85.1	59.38	61.58	58.68	51.75	73.4	47.46
Merged-chr12-99974605-2	chr12	99974097	99975097	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10098.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	34.9	43.77	37.0	70.85	41.99	40.99	45.42	57.92	46.84
Merged-chr17-25006654-1	chr17	25006154	25007154	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020608, intron 2 of 20)	intron (NM_020608, intron 2 of 20)	8576.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	33.18	21.2	26.82	20.24	4.2	11.25	2.11	3.98	10.62
Merged-chr8-122428432-1	chr8	122427932	122428932	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301284, intron 1 of 4)	intron (NM_001301284, intron 1 of 4)	4508.0	NM_001301284	13057.0	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	33.75	17.05	16.65	24.29	15.39	24.11	41.19	28.74	23.73
Merged-chr5-64321763-1	chr5	64321263	64322263	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 13 of 18)	intron (NM_001289514, intron 13 of 18)	91406.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	23.45	18.43	15.72	22.27	22.86	27.33	8.45	7.52	8.74
Merged-chr19-46327092-1	chr19	46326592	46327592	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347454)	promoter-TSS (NM_001347454)	64.0	NM_028627	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	7.44	1.38	1.85	5.4	2.33	1.61	4.22	3.54	5.0
Merged-chr1-88103178-1	chr1	88102678	88103678	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_201410)	promoter-TSS (NM_201410)	-79.0	NM_201410	394435.0	Mm.300095	NM_201410	ENSMUSG00000090145	Ugt1a6b	A9'|Ugt1a9	UDP glucuronosyltransferase 1 family, polypeptide A6B	protein-coding	8.58	3.69	7.4	4.05	0.47	1.61	1.06	4.86	1.25
Merged-chr6-145823987-2	chr6	145823481	145824481	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15598.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	5.15	1.84	0.0	2.02	0.93	3.22	1.06	1.77	0.0
Merged-chr14-78678080-1	chr14	78677580	78678580	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 2 of 29)	HAL1|LINE|L1	-33629.0	NR_104044	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.43	5.53	5.55	6.07	8.4	4.82	3.17	1.77	3.12
Merged-chr9-106769965-1	chr9	106769465	106770465	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030730, intron 1 of 21)	intron (NM_030730, intron 1 of 21)	19248.0	NM_030730	81000.0	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	8.01	6.91	3.7	3.37	0.93	1.61	9.51	7.52	2.5
Merged-chr17-27857811-2	chr17	27857287	27858287	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080769, intron 1 of 20)	intron (NM_001080769, intron 1 of 20)	1280.0	NM_001080769	224648.0	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	86.38	69.58	53.65	107.95	68.58	57.87	170.05	186.15	56.21
Merged-chr13-112447304-1	chr13	112446804	112447804	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16766.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	10.3	0.92	3.7	4.05	1.87	0.8	3.17	4.42	3.75
Merged-chr6-98997903-3	chr6	98997406	98998406	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 8 of 17)	intron (NM_001197321, intron 8 of 17)	30392.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	25.17	17.51	5.55	20.24	13.06	10.45	16.9	9.29	8.74
Merged-chr3-69908237-1	chr3	69907737	69908737	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48343.0	NM_001286959	66183.0	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	2.86	2.76	0.0	2.7	1.87	2.41	1.06	1.33	1.25
Merged-chr5-105155756-1	chr5	105155256	105156256	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16170.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	14.87	11.98	6.47	8.77	10.73	8.04	14.79	7.96	8.74
Merged-chr12-59195371-1	chr12	59194871	59195871	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24112.0	NM_001033156	70611.0	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	32.61	33.64	18.5	16.19	11.66	14.47	34.85	34.49	26.85
Merged-chr2-154773198-1	chr2	154772698	154773698	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR40c|LTR|ERVL	-17912.0	NM_001139512	19383.0	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	3.43	6.45	6.47	2.7	1.4	0.0	8.45	1.33	5.0
Merged-chr5-66125110-1	chr5	66124610	66125610	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	ID4|SINE|ID	25868.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	13.73	9.68	13.87	23.62	9.33	17.68	16.9	12.82	5.0
Merged-chr6-129514413-1	chr6	129513913	129514913	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081186, intron 2 of 4)	intron (NM_001081186, intron 2 of 4)	1856.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	6.86	4.61	3.7	8.1	3.73	11.25	2.11	7.07	5.0
Merged-chr19-12591127-2	chr19	12590622	12591622	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015503, intron 1 of 1)	intron (NR_015503, intron 1 of 1)	5444.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	10.87	11.98	10.17	7.42	6.53	5.63	23.24	19.46	17.49
Merged-chr12-71821398-2	chr12	71820870	71821870	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	-9698.0	NM_026102	208846.0	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	9.15	11.06	5.55	13.49	5.6	12.06	11.62	3.98	13.74
Merged-chr16-91548849-1	chr16	91548349	91549349	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	B3|SINE|B2	1755.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	139.01	103.22	43.47	119.43	95.63	90.02	242.92	284.76	121.16
Merged-chr15-42463498-2	chr15	42462992	42463992	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286062, intron 6 of 8)	intron (NM_001286062, intron 6 of 8)	213485.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	1.14	0.46	6.47	0.67	2.8	8.04	2.11	4.42	2.5
Merged-chr18-84439042-1	chr18	84438542	84439542	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	150462.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	4.0	5.53	9.25	2.7	3.73	4.82	1.06	2.65	7.49
Merged-chrX-36311629-2	chrX	36311140	36312140	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-16769.0	NM_028894	74365.0	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	6.86	4.61	2.77	3.37	1.87	4.82	4.22	0.44	4.37
Merged-chr2-73492137-1	chr2	73491637	73492637	+	711.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	Lx7|LINE|L1	-6384.0	NM_001289723	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	62.93	40.09	26.82	44.53	18.19	30.54	30.63	32.72	11.87
Merged-chr7-137414962-1	chr7	137414462	137415462	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-4206.0	NM_029886	77252.0	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	17.16	19.81	47.17	31.71	14.93	33.76	10.56	8.84	5.62
Merged-chr16-90830600-3	chr16	90830116	90831116	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_133572)	promoter-TSS (NR_133572)	-243.0	NR_133572	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	12.01	20.27	9.25	29.69	18.19	8.04	16.9	17.24	7.49
Merged-chr7-25251483-3	chr7	25250992	25251992	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010155)	promoter-TSS (NM_010155)	-734.0	NM_010155	13875.0	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	46.91	35.94	21.27	31.71	25.66	29.74	41.19	43.77	34.97
Merged-chr8-122575326-1	chr8	122574826	122575826	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009698, intron 3 of 4)	intron (NM_009698, intron 3 of 4)	1581.0	NM_009698	11821.0	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	12.59	15.67	5.55	6.75	10.26	20.9	9.51	11.5	10.62
Merged-chr11-117655114-1	chr11	117654614	117655614	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	CpG	825.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	137.29	54.37	95.27	115.38	39.19	90.02	163.71	34.49	44.97
Merged-chr4-123305997-2	chr4	123305499	123306499	+	711.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17680.0	NM_022033	64059.0	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	8.58	3.23	3.7	6.07	3.27	4.82	2.11	4.42	1.87
Merged-chr3-116120554-1	chr3	116120054	116121054	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011693, intron 5 of 8)	intron (NM_011693, intron 5 of 8)	9134.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	14.3	11.06	19.42	8.77	10.26	10.45	11.62	6.63	16.24
Merged-chr13-59556943-1	chr13	59556443	59557443	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001284219)	promoter-TSS (NM_001284219)	-21.0	NM_001284219	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	33.18	23.5	35.15	49.25	23.33	36.97	50.7	19.01	26.23
Merged-chr12-33057447-2	chr12	33056946	33057946	+	711.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024478, intron 8 of 19)	intron (NM_001024478, intron 8 of 19)	35429.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	5.15	1.84	11.1	4.05	1.87	2.41	5.28	2.21	2.5
Merged-chr11-72466466-3	chr11	72465974	72466974	+	710.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153060, intron 2 of 12)	intron (NM_153060, intron 2 of 12)	8553.0	NM_001276383	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	47.48	33.18	28.67	36.43	21.46	26.53	45.42	42.45	34.97
Merged-chr3-108070480-3	chr3	108069990	108070990	+	710.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14912.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	6.29	4.61	1.85	4.72	6.06	9.65	4.22	4.86	5.62
Merged-chr7-92977597-3	chr7	92977080	92978080	+	710.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102299.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	13.16	11.52	14.8	12.82	14.46	20.09	5.28	11.05	5.62
Merged-chr7-35137710-3	chr7	35137203	35138203	+	710.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	18410.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	21.17	17.05	18.5	10.8	11.66	20.09	13.73	22.11	28.1
Merged-chr2-165956504-3	chr2	165955990	165956990	+	710.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36147.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	118.42	119.34	88.8	133.59	118.03	111.73	196.45	280.33	119.91
Merged-chr4-132838280-3	chr4	132837751	132838751	+	710.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355198, intron 2 of 6)	intron (NM_001355198, intron 2 of 6)	4883.0	NM_001355198	100336.0	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	21.17	20.27	18.5	15.52	12.13	6.43	13.73	12.82	9.99
Merged-chr11-94486195-2	chr11	94485701	94486701	+	710.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144827)	promoter-TSS (NM_144827)	-891.0	NM_144827	217116.0	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	4.0	0.46	0.0	4.05	1.87	3.22	5.28	1.77	1.25
Merged-chr12-80815627-3	chr12	80815104	80816104	+	710.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	25072.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	78.94	63.59	31.45	87.04	27.52	43.4	73.93	53.5	46.22
Merged-chr2-129308577-2	chr2	129308077	129309077	+	710.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040371)	TTS (NR_040371)	1395.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	348.95	399.96	243.26	325.21	304.16	237.12	427.76	549.17	251.06
Merged-chr3-96293471-2	chr3	96292962	96293962	+	710.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	507.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	76.66	90.31	90.65	86.36	99.37	116.55	164.76	170.23	86.18
Merged-chr2-118537437-3	chr2	118536928	118537928	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331221, intron 3 of 3)	intron (NM_001331221, intron 3 of 3)	7159.0	NR_138603	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	12.01	7.83	12.95	15.52	7.0	16.08	32.74	24.32	26.23
Merged-chr7-4513419-3	chr7	4512890	4513890	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360154, intron 4 of 12)	intron (NM_001360154, intron 4 of 12)	2585.0	NM_001277903	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	2.86	1.38	1.85	5.4	2.33	4.82	3.17	2.21	3.12
Merged-chr1-131613526-3	chr1	131613021	131614021	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14407.0	NM_011924	26361.0	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	4.0	0.92	0.0	1.35	1.4	1.61	3.17	0.0	0.0
Merged-chr13-107873323-1	chr13	107872823	107873823	+	710.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	16741.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	10.3	7.83	14.8	14.17	8.86	18.49	12.67	10.17	7.49
Merged-chr1-132343820-3	chr1	132343332	132344332	+	710.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24116.0	NM_001311108	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	24.03	15.67	18.5	24.29	14.93	23.31	35.91	12.82	5.62
Merged-chr11-116586970-3	chr11	116586471	116587471	+	710.81665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5524.0	NM_173755	217342.0	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	2.86	4.15	0.0	9.45	4.2	0.0	3.17	1.33	2.5
Merged-chr7-132776629-1	chr7	132776129	132777129	+	710.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 2 of 4)	intron (NM_212473, intron 2 of 4)	287.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.29	0.92	5.55	8.1	9.8	9.65	3.17	0.0	1.87
Merged-chr19-41264802-3	chr19	41264251	41265251	+	710.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133352)	promoter-TSS (NM_133352)	-747.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	210.52	231.77	139.67	165.98	166.54	161.56	176.38	198.98	119.91
Merged-chr6-46961498-3	chr6	46960974	46961974	+	710.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-282922.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.14	0.0	6.47	4.05	1.4	4.02	1.06	1.77	0.0
Merged-chr10-99166182-3	chr10	99165655	99166655	+	710.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58020.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	29.17	23.5	1.85	29.69	20.53	31.35	21.12	19.46	24.98
Merged-chr17-32349128-2	chr17	32348626	32349626	+	710.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017476, intron 1 of 13)	MER20|DNA|hAT-Charlie	1451.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	13.73	13.36	6.47	12.14	4.67	16.08	10.56	8.84	7.49
Merged-chr6-47354271-2	chr6	47353757	47354757	+	710.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99475.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	4.58	3.23	7.4	6.07	7.0	8.04	4.22	3.54	3.75
Merged-chr6-73010204-2	chr6	73009706	73010706	+	710.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51458.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	7.44	2.76	3.7	3.37	3.73	0.0	6.34	0.44	2.5
Merged-chr4-141625545-3	chr4	141625060	141626060	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033150)	TTS (NM_001033150)	-1726.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	17.73	7.37	11.1	5.4	6.53	9.65	5.28	4.42	4.37
Merged-chr18-65272321-1	chr18	65271821	65272821	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037294, intron 12 of 12)	intron (NM_001037294, intron 12 of 12)	23460.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	3.43	0.92	5.55	1.35	0.0	0.0	1.06	0.44	3.75
Merged-chr11-3428983-1	chr11	3428483	3429483	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110959, intron 1 of 5)	intron (NR_110959, intron 1 of 5)	-19745.0	NM_010718	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	13.73	10.6	11.1	6.75	7.0	11.25	7.39	7.52	8.12
Merged-chr7-75370691-1	chr7	75370191	75371191	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61429.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	8.01	4.61	6.47	5.4	4.2	9.65	4.22	1.77	6.87
Merged-chr15-12214603-3	chr15	12214148	12215148	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	9620.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	16.59	11.52	5.55	35.76	21.93	17.68	19.01	13.27	7.49
Merged-chrX-18239788-3	chrX	18239292	18240292	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310444, intron 9 of 28)	ORR1D2|LTR|ERVL-MaLR	77217.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	2.86	3.23	3.7	6.07	7.0	3.22	1.06	4.42	5.0
Merged-chr6-125516126-3	chr6	125515611	125516611	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21351.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	20.02	8.29	8.32	31.04	12.6	8.84	10.56	9.29	3.75
Merged-chr3-108018583-1	chr3	108018083	108019083	+	710.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010358)	promoter-TSS (NM_010358)	-610.0	NM_010358	14862.0	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	72.08	52.07	31.45	110.65	93.3	89.22	39.08	71.63	46.84
Merged-chr7-48973023-1	chr7	48972523	48973523	+	710.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	13950.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.58	2.3	3.7	3.37	2.8	4.82	0.0	3.1	4.37
Merged-chr2-122126354-2	chr2	122125855	122126855	+	710.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 7 of 17)	intron (NM_026251, intron 7 of 17)	-7969.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	12.01	11.06	15.72	14.17	10.73	12.06	9.51	8.4	11.24
Merged-chr17-37618269-3	chr17	37617763	37618763	+	710.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	6370.0	NM_146632	258625.0	Mm.377599	NM_146632	ENSMUSG00000061336	Olfr116	MOR218-2	olfactory receptor 116	protein-coding	4.0	7.37	7.4	4.05	5.13	1.61	2.11	2.65	0.0
Merged-chr10-96132339-3	chr10	96131827	96132827	+	710.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93880.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.0	3.69	0.0	12.14	4.2	3.22	4.22	11.05	5.62
Merged-chr11-44401975-3	chr11	44401463	44402463	+	710.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303244, intron 1 of 7)	intron (NM_001303244, intron 1 of 7)	1900.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.29	7.83	1.85	8.1	2.33	1.61	4.22	4.42	1.25
Merged-chr8-84012554-3	chr8	84012005	84013005	+	710.5888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291292)	promoter-TSS (NM_001291292)	-785.0	NM_001291292	70134.0	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	1.14	3.23	0.0	4.05	1.4	1.61	4.22	2.21	2.5
Merged-chr5-140332275-3	chr5	140331769	140332769	+	710.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026510)	promoter-TSS (NM_026510)	313.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	25.74	25.34	24.97	13.49	14.46	16.88	15.84	22.55	26.23
Merged-chr2-53668813-3	chr2	53668313	53669313	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	416739.0	NM_023396	67874.0	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	9.72	2.3	9.25	5.4	1.4	1.61	2.11	4.42	0.62
Merged-chr14-75149484-1	chr14	75148984	75149984	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	13059.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	30.89	19.35	24.97	20.92	25.66	13.66	19.01	25.2	22.48
Merged-chr9-22230751-2	chr9	22230246	22231246	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028420, intron 1 of 4)	B2_Mm2|SINE|B2	5034.0	NM_001164624	235047.0	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	5.72	7.83	7.4	5.4	4.2	9.65	8.45	3.98	6.87
Merged-chr8-46078867-2	chr8	46078338	46079338	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	intron (NM_207213, intron 5 of 17)	45308.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	20.59	21.66	23.12	16.19	16.79	16.08	20.07	11.94	17.49
Merged-chr7-125603527-1	chr7	125603027	125604027	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_021887)	promoter-TSS (NM_021887)	98.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	85.81	81.56	62.9	8.1	4.2	8.04	41.19	42.89	19.98
Merged-chrX-103557306-1	chrX	103556806	103557806	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11806.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	18.31	27.19	17.57	15.52	18.19	24.11	9.51	10.17	19.36
Merged-chr1-78895475-2	chr1	78894982	78895982	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	intron (NR_151519, intron 3 of 3)	78571.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	26.89	32.25	23.12	32.39	18.19	29.74	24.29	29.63	21.23
Merged-chr6-101555869-2	chr6	101555381	101556381	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-177984.0	NM_018884	55983.0	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	37.18	34.1	24.05	81.64	58.31	47.42	36.97	36.26	11.87
Merged-chr4-12498601-2	chr4	12498112	12499112	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-326597.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	33.75	25.34	33.3	23.62	27.52	24.11	29.57	15.92	11.24
Merged-chr2-30442707-1	chr2	30442207	30443207	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138748, intron 8 of 9)	intron (NM_138748, intron 8 of 9)	26657.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	141.3	172.79	107.29	149.11	139.49	187.28	111.96	180.4	108.67
Merged-chrX-71228414-1	chrX	71227914	71228914	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 1 of 15)	RMER15|LTR|ERVL	13340.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	17.16	13.36	9.25	22.94	12.13	8.84	24.29	19.9	11.87
Merged-chr3-89910163-2	chr3	89909640	89910640	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010559, intron 1 of 9)	intron (NM_010559, intron 1 of 9)	3056.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	50.34	52.53	43.47	39.13	38.72	53.85	38.02	48.2	43.72
Merged-chr11-83663180-2	chr11	83662677	83663677	+	710.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013652, intron 1 of 2)	B2_Mm2|SINE|B2	593.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	334.08	299.05	182.22	404.16	368.54	243.55	262.99	307.31	159.88
Merged-chr4-46126660-2	chr4	46126162	46127162	+	710.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355375, intron 4 of 9)	intron (NM_001355375, intron 4 of 9)	11813.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	3.43	2.3	0.0	5.4	3.27	3.22	6.34	0.44	6.25
Merged-chr17-63198856-3	chr17	63198354	63199354	+	710.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	114119.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	7.44	9.68	5.55	6.75	5.13	17.68	10.56	5.31	3.75
Merged-chr13-119309421-2	chr13	119308937	119309937	+	710.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	99574.0	NM_008710	18115.0	Mm.132584	NM_008710	ENSMUSG00000116207	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	22.88	31.79	28.67	24.96	34.99	28.94	28.52	34.49	37.47
Merged-chr12-32146658-2	chr12	32146155	32147155	+	710.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61683.0	NM_001146201	30955.0	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma	protein-coding	9.15	3.69	3.7	10.12	4.67	22.51	13.73	7.96	5.0
Merged-chr4-34430850-2	chr4	34430341	34431341	+	710.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119774.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	13.73	17.51	5.55	8.77	7.93	15.27	0.0	1.33	7.49
Merged-chr10-128519044-3	chr10	128518534	128519534	+	710.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011843, intron 14 of 30)	intron (NM_011843, intron 14 of 30)	6825.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	4.0	1.38	0.92	3.37	1.87	0.0	3.17	0.88	5.0
Merged-chr10-14209583-2	chr10	14209093	14210093	+	710.349976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	243214.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.86	8.29	5.55	6.75	2.33	4.02	11.62	5.31	9.37
Merged-chr2-101982213-2	chr2	101981690	101982690	+	710.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	95928.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	1.72	3.23	1.85	2.02	0.93	1.61	3.17	3.98	5.0
Merged-chr8-109780704-3	chr8	109780200	109781200	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301211, intron 1 of 22)	intron (NM_001301211, intron 1 of 22)	2117.0	NM_001301211	11765.0	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	68.07	88.47	29.6	64.77	60.65	57.87	69.71	72.07	55.58
Merged-chr7-48923822-1	chr7	48923322	48924322	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35251.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	4.0	3.69	2.77	2.7	4.67	2.41	3.17	1.33	1.25
Merged-chr8-13640457-1	chr8	13639957	13640957	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	37130.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	17.73	6.91	3.7	18.22	14.46	40.19	8.45	10.17	8.74
Merged-chr12-99645240-1	chr12	99644740	99645740	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-17266.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	1.72	1.38	1.85	1.35	1.4	3.22	1.06	0.88	5.62
Merged-chr7-16228297-1	chr7	16227797	16228797	+	710.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	-6265.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	19.45	31.79	21.27	35.76	21.46	41.8	19.01	16.8	27.48
Merged-chr2-142858959-3	chr2	142858448	142859448	+	710.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42516.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	18.88	18.89	11.1	22.94	21.93	11.25	23.24	22.11	11.87
Merged-chr4-120381216-3	chr4	120380711	120381711	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24070.0	NM_001159630	29871.0	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	6.29	3.23	1.85	8.1	6.53	0.0	7.39	5.31	8.74
Merged-chr6-5508030-3	chr6	5507483	5508483	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-11705.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	62.35	55.75	33.3	62.07	70.91	77.97	29.57	20.34	33.1
Merged-chr3-58502109-3	chr3	58501625	58502625	+	710.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23696.0	NM_001005509	229317.0	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	12.59	11.06	12.95	13.49	11.66	12.86	9.51	7.07	3.75
Merged-chr2-155044705-2	chr2	155044217	155045217	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	MTD|LTR|ERVL-MaLR	29780.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	6.86	2.76	5.55	6.07	3.73	9.65	8.45	4.42	5.0
Merged-chr1-151615842-3	chr1	151615336	151616336	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	44463.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	44.05	49.76	25.9	66.12	41.05	36.17	39.08	57.92	30.6
Merged-chr1-152623937-1	chr1	152623437	152624437	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	LTR78B|LTR|ERV1	1280.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	157.31	169.57	114.69	157.88	153.01	141.47	204.9	210.03	106.79
Merged-chr6-42398405-2	chr6	42397893	42398893	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1845.0	NM_001001452	387514.0	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	13.73	8.29	3.7	23.62	15.39	5.63	9.51	7.52	10.62
Merged-chr17-70833672-3	chr17	70833192	70834192	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13085.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	369.55	456.64	327.43	348.83	365.28	294.99	364.38	444.82	207.34
Merged-chr9-69441126-2	chr9	69440636	69441636	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12547.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	8.58	8.29	22.2	15.52	10.73	13.66	11.62	13.27	6.87
Merged-chr16-33191869-1	chr16	33191369	33192369	+	710.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176840, intron 1 of 12)	intron (NM_176840, intron 1 of 12)	6798.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	55.49	55.29	60.12	66.8	64.84	77.16	62.31	54.39	36.85
Merged-chr15-81857234-3	chr15	81856742	81857742	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020507, intron 1 of 1)	intron (NM_020507, intron 1 of 1)	1084.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	88.67	83.4	91.57	70.17	60.18	81.18	120.41	108.33	79.32
Merged-chr8-95420650-2	chr8	95420190	95421190	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008187, intron 5 of 5)	intron (NM_008187, intron 5 of 5)	14179.0	NM_008187	14894.0	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	28.6	18.89	16.65	9.45	7.93	11.25	20.07	11.94	16.24
Merged-chr8-72324604-6	chr8	72324175	72325175	+	710.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5613.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	16.59	29.49	15.72	31.71	10.73	30.54	22.18	13.71	26.85
Merged-chr1-151706228-3	chr1	151705734	151706734	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	48493.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	7.44	3.23	1.85	8.1	3.27	14.47	1.06	2.65	3.75
Merged-chr2-10049418-3	chr2	10048906	10049906	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027748)	promoter-TSS (NM_027748)	-797.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	13.73	21.2	15.72	29.69	26.59	20.09	45.42	38.91	15.61
Merged-chr14-79503876-3	chr14	79503396	79504396	+	710.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	MTE2a|LTR|ERVL-MaLR	-11778.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	44.62	44.24	64.75	51.95	66.71	46.62	57.03	63.67	41.84
Merged-chr12-12313651-3	chr12	12313165	12314165	+	710.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 2 of 11)	intron (NM_001146119, intron 2 of 11)	51526.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	13.16	6.45	36.07	12.14	6.06	14.47	15.84	10.17	8.74
Merged-chr6-108835940-3	chr6	108835432	108836432	+	710.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138677, intron 1 of 11)	RSINE1|SINE|B4	7291.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	30.32	29.03	44.4	28.34	14.93	27.33	27.46	23.43	19.36
Merged-chr10-130322818-2	chr10	130322316	130323316	+	710.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183264)	promoter-TSS (NM_183264)	-36.0	NM_183264	67596.0	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	4.58	3.69	0.0	4.05	4.67	6.43	1.06	3.1	3.75
Merged-chr1-183657267-2	chr1	183656778	183657778	+	710.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91699.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	6.86	2.76	1.85	8.1	3.73	4.82	15.84	16.8	9.99
Merged-chr13-100676391-5	chr13	100675881	100676881	+	710.1400150000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	6900.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	48.05	55.29	37.0	62.07	74.64	69.13	134.14	143.7	74.94
Merged-chr4-80331292-3	chr4	80330785	80331785	+	710.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-502928.0	NM_031202	22178.0	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	8.01	1.84	3.7	5.4	5.6	5.63	6.34	3.54	1.25
Merged-chr16-24505257-3	chr16	24504688	24505688	+	710.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 3 of 12)	intron (NM_178665, intron 3 of 12)	-24126.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	5.72	9.68	5.55	8.77	6.53	7.23	6.34	6.63	2.5
Merged-chr6-17307561-2	chr6	17307073	17308073	+	710.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243064)	promoter-TSS (NM_001243064)	-67.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	2.86	1.84	1.85	2.7	1.87	0.0	1.06	1.33	3.75
Merged-chr1-64736652-3	chr1	64736130	64737130	+	710.041687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_022721, exon 2 of 2)	5' UTR (NM_022721, exon 2 of 2)	1120.0	NM_001042659	14367.0	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	16.59	11.52	12.95	19.57	4.67	11.25	17.96	7.07	9.99
Merged-chr1-171686703-2	chr1	171686204	171687204	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007649, intron 1 of 3)	intron (NM_007649, intron 1 of 3)	4712.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	54.92	50.69	31.45	47.9	38.72	28.94	64.43	68.98	44.97
Merged-chr3-108258045-1	chr3	108257545	108258545	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011967, intron 1 of 8)	intron (NM_011967, intron 1 of 8)	1119.0	NM_011967	26442.0	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	145.3	207.35	95.27	89.06	106.83	81.18	139.42	248.5	90.56
Merged-chr10-84920003-1	chr10	84919503	84920503	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013441, intron 1 of 8)	intron (NM_001013441, intron 1 of 8)	2390.0	NM_183172	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	10.87	11.06	12.95	12.82	8.86	17.68	6.34	3.98	7.49
Merged-chr6-3475144-1	chr6	3474644	3475644	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178899, intron 4 of 9)	intron (NM_178899, intron 4 of 9)	19354.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	2.86	2.76	5.55	7.42	4.2	0.0	2.11	1.77	6.25
Merged-chr3-129472114-1	chr3	129471614	129472614	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38441.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	11.44	7.83	3.7	8.1	9.8	6.43	12.67	11.94	9.99
Merged-chr6-29902494-1	chr6	29901994	29902994	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347084, intron 13 of 17)	intron (NM_001347084, intron 13 of 17)	-14519.0	NM_177204	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	2.86	5.53	9.25	6.07	4.67	6.43	4.22	7.96	15.61
Merged-chr3-105914208-2	chr3	105913698	105914698	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027025, exon 2 of 7)	5' UTR (NM_027025, exon 2 of 7)	9777.0	NM_009631	11542.0	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	18.31	12.9	17.57	10.8	7.93	7.23	8.45	6.19	6.87
Merged-chr14-40963062-1	chr14	40962562	40963562	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	3834.0	NM_145928	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	3.43	5.07	3.7	3.37	6.53	9.65	4.22	4.86	8.12
Merged-chr16-42876761-1	chr16	42876261	42877261	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040522)	promoter-TSS (NR_040522)	-999.0	NR_040522	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	72.08	87.55	80.47	91.76	88.17	54.66	123.57	110.54	65.58
Merged-chr18-75501793-1	chr18	75501293	75502293	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201354, intron 9 of 11)	intron (NM_201354, intron 9 of 11)	-12852.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	21.17	30.41	36.07	22.27	20.53	36.97	22.18	12.82	31.85
Merged-chr4-75259536-1	chr4	75259036	75260036	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18756.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	9.15	4.61	1.85	6.75	7.93	10.45	5.28	2.21	6.25
Merged-chr15-10920420-1	chr15	10919920	10920920	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31912.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	2.29	4.61	5.55	6.75	3.73	8.84	3.17	8.84	11.24
Merged-chr14-59397165-1	chr14	59396665	59397665	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001320725, intron 14 of 23)	intron (NM_001320725, intron 14 of 23)	-3653.0	NM_001164289	628705.0	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	4.58	2.3	1.85	2.02	2.8	9.65	1.06	3.1	1.25
Merged-chr19-12814025-1	chr19	12813525	12814525	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 3 of 8)	intron (NM_134152, intron 3 of 8)	15446.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	17.73	23.5	21.27	17.54	17.73	36.97	24.29	14.15	17.49
Merged-chr16-57548160-1	chr16	57547660	57548660	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-1082.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	78.37	99.53	84.17	87.04	75.11	89.22	92.94	76.94	64.33
Merged-chr8-79028768-1	chr8	79028268	79029268	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294279, intron 1 of 14)	intron (NM_001294279, intron 1 of 14)	331.0	NM_178267	622675.0	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	10.87	8.75	18.5	29.01	32.19	21.7	8.45	3.54	1.25
Merged-chr8-86880374-2	chr8	86879883	86880883	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	4875.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	22.88	21.66	18.5	21.59	12.13	15.27	27.46	11.5	23.11
Merged-chr10-70183387-2	chr10	70182870	70183870	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 7 of 8)	intron (NM_001111121, intron 7 of 8)	-21294.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	9.72	4.15	11.1	10.12	3.27	9.65	11.62	3.54	6.87
Merged-chr13-90062080-1	chr13	90061580	90062580	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_028012, exon 3 of 8)	exon (NM_028012, exon 3 of 8)	27528.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	6.29	5.07	17.57	11.47	6.06	10.45	13.73	5.75	3.12
Merged-chr19-10848344-1	chr19	10847844	10848844	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	5800.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	13.16	6.91	3.7	10.12	4.67	4.02	5.28	3.98	2.5
Merged-chr6-65588980-1	chr6	65588480	65589480	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1418.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	5.72	5.53	3.7	4.72	4.67	1.61	2.11	1.77	13.74
Merged-chr6-49973706-1	chr6	49973206	49974206	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136535.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	7.44	5.07	5.55	5.4	4.2	8.04	5.28	6.19	0.0
Merged-chr18-84313720-1	chr18	84313220	84314220	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	225562.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	3.43	7.37	0.0	6.75	0.47	0.0	8.45	3.1	1.25
Merged-chr3-133094926-1	chr3	133094426	133095426	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027927, intron 1 of 6)	intron (NM_027927, intron 1 of 6)	-2887.0	NM_001356309	67553.0	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	10.87	9.22	1.85	8.77	11.66	1.61	4.22	11.05	8.12
Merged-chr14-18237175-2	chr14	18236626	18237626	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011584, intron 1 of 7)	intron (NM_011584, intron 1 of 7)	1980.0	NM_011584	353187.0	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	33.18	31.33	26.82	25.64	24.72	37.78	47.53	53.94	38.1
Merged-chr8-120821082-1	chr8	120820582	120821582	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82443.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.43	2.3	11.1	4.72	4.67	3.22	2.11	1.77	5.0
Merged-chr6-116669764-1	chr6	116669264	116670264	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	4072.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	172.19	125.33	150.77	141.02	72.31	139.86	167.93	202.07	112.42
Merged-chr10-88732501-1	chr10	88732001	88733001	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025859, intron 1 of 5)	intron (NM_025859, intron 1 of 5)	1087.0	NM_025859	104303.0	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	25.17	13.82	10.17	26.31	14.93	28.13	14.79	14.59	4.37
Merged-chr3-101552803-1	chr3	101552303	101553303	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	51904.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	9.15	7.83	11.1	12.14	9.33	9.65	15.84	10.61	23.73
Merged-chr6-47812681-1	chr6	47812181	47813181	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009787, intron 1 of 9)	intron (NM_009787, intron 1 of 9)	831.0	NM_009787	12304.0	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	58.35	58.06	37.92	44.53	47.12	54.66	40.14	42.89	14.36
Merged-chr10-68147054-1	chr10	68146554	68147554	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	131672.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.86	1.84	5.55	10.12	5.6	1.61	6.34	3.1	2.5
Merged-chr1-135486529-1	chr1	135486029	135487029	+	710.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173437, intron 3 of 28)	intron (NM_173437, intron 3 of 28)	-31846.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	14.3	10.6	24.05	2.02	2.33	3.22	0.0	1.33	10.62
Merged-chr10-127617501-1	chr10	127617001	127618001	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	3647.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	42.33	56.22	76.77	81.64	64.38	155.93	108.79	88.43	66.82
Merged-chr5-32195458-1	chr5	32194958	32195958	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-37250.0	NM_030072	665270.0	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	30.32	18.89	31.45	31.04	19.59	51.44	44.36	42.45	39.35
Merged-chr10-42436971-1	chr10	42436471	42437471	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359297, intron 2 of 11)	intron (NM_001359297, intron 2 of 11)	41594.0	NM_001359297	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	2.29	4.15	3.7	3.37	6.53	1.61	2.11	0.0	0.0
Merged-chr13-95325781-1	chr13	95325281	95326281	+	710.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001302539)	promoter-TSS (NM_001302539)	956.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	52.06	39.63	14.8	118.75	91.9	48.23	84.49	42.45	33.72
Merged-chr4-107252850-1	chr4	107252350	107253350	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355460)	promoter-TSS (NM_001355460)	683.0	NM_029985	77809.0	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	21.74	9.68	38.85	22.94	18.66	22.51	25.35	17.24	6.87
Merged-chr5-99227787-2	chr5	99227323	99228323	+	710.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	25104.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	21.74	17.97	14.8	18.89	12.6	13.66	19.01	18.57	11.24
Merged-chr1-161512339-3	chr1	161511830	161512830	+	709.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	17673.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	19.45	8.75	7.4	20.24	14.93	12.86	21.12	20.78	11.87
Merged-chr13-6471840-3	chr13	6471343	6472343	+	709.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76314.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	6.29	2.3	3.7	2.02	3.27	0.0	5.28	3.1	0.0
Merged-chr9-95511300-3	chr9	95510813	95511813	+	709.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357977, intron 1 of 25)	CpG	683.0	NM_001357975	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	248.27	329.0	308.01	244.92	290.63	274.9	326.36	338.7	202.35
Merged-chr13-34193544-2	chr13	34193039	34194039	+	709.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 7 of 10)	intron (NM_001033167, intron 7 of 10)	30575.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	15.45	11.98	7.4	14.84	14.93	6.43	28.52	15.48	16.24
Merged-chr7-134669024-2	chr7	134668468	134669468	+	709.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1719.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	9.72	7.37	15.72	11.47	6.06	4.82	16.9	3.1	12.49
Merged-chr18-82567849-3	chr18	82567350	82568350	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025251, intron 2 of 6)	intron (NM_001025251, intron 2 of 6)	13342.0	NM_001025254	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	5.15	7.83	3.7	6.07	1.87	7.23	3.17	4.86	1.25
Merged-chr5-24452488-3	chr5	24451975	24452975	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_139153, exon 1 of 18)	exon (NM_139153, exon 1 of 18)	298.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	138.44	76.49	131.34	102.56	82.57	132.63	123.57	59.25	55.58
Merged-chr11-105347984-3	chr11	105347465	105348465	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008626, exon 26 of 30)	exon (NM_008626, exon 26 of 30)	55319.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	1.14	1.38	3.7	3.37	0.47	1.61	1.06	0.0	5.0
Merged-chr4-88412560-3	chr4	88412067	88413067	+	709.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025760)	TTS (NM_025760)	26359.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	12.01	13.36	26.82	20.24	15.86	12.06	11.62	17.69	5.62
Merged-chr5-139449287-3	chr5	139448777	139449777	+	709.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	11257.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	2.86	2.76	2.77	9.45	8.86	14.47	19.01	11.94	3.75
Merged-chr10-62488476-2	chr10	62487972	62488972	+	709.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1667.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	14.87	18.43	26.82	17.54	5.6	20.09	19.01	15.92	14.36
Merged-chr2-160647692-2	chr2	160647198	160648198	+	709.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	1801.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	62.35	106.9	61.97	50.6	72.31	70.73	65.48	88.43	72.45
Merged-chr8-119831634-5	chr8	119831115	119832115	+	709.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	8964.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	29.75	16.59	19.42	29.69	14.0	37.78	25.35	18.13	14.36
Merged-chr2-122450483-2	chr2	122449994	122450994	+	709.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 6 of 17)	MTC|LTR|ERVL-MaLR	9674.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	3.43	10.14	18.5	10.12	9.8	18.49	9.51	6.63	11.24
Merged-chr7-4811742-3	chr7	4811269	4812269	+	709.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133777, intron 1 of 3)	CpG	571.0	NM_133777	77891.0	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	185.92	188.92	180.37	171.38	169.34	153.52	144.7	197.21	178.61
Merged-chr14-51132596-1	chr14	51132096	51133096	+	709.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001360117)	TTS (NM_001360117)	3532.0	NR_153407	78416.0	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	3.43	2.76	0.0	1.35	0.93	1.61	8.45	13.71	7.49
Merged-chr14-25607462-1	chr14	25606962	25607962	+	709.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	CpG	3949.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	37.18	32.25	33.3	37.11	26.59	29.74	42.25	21.67	11.24
Merged-chr11-108235514-2	chr11	108235014	108236014	+	709.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	108374.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	12.01	9.68	16.65	8.1	7.46	16.08	9.51	6.63	8.74
Merged-chr7-113308920-1	chr7	113308420	113309420	+	709.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357070, intron 18 of 19)	(TG)n|Simple_repeat|Simple_repeat	60419.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	3.43	2.76	1.85	4.72	0.93	7.23	2.11	1.33	3.75
Merged-chr15-59064134-2	chr15	59063630	59064630	+	709.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	17896.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	18.31	5.07	5.55	7.42	12.6	11.25	14.79	7.52	11.87
Merged-chr8-56896148-1	chr8	56895648	56896648	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	345014.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	1.14	5.99	3.7	7.42	6.06	4.82	2.11	3.98	1.87
Merged-chr4-125102886-3	chr4	125102437	125103437	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290701, exon 5 of 7)	exon (NM_001290701, exon 5 of 7)	17803.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	24.6	12.44	15.72	20.24	18.66	20.9	13.73	21.67	21.23
Merged-chr16-3239511-1	chr16	3239011	3240011	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-352887.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	6.29	5.07	8.32	3.37	10.73	0.0	3.17	0.88	8.12
Merged-chr8-31135777-1	chr8	31135277	31136277	+	709.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14539.0	NM_144927	234138.0	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	2.29	4.15	0.0	3.37	8.86	0.0	3.17	0.44	7.49
Merged-chr10-126928871-1	chr10	126928371	126929371	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27500.0	NM_001358970	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	14.87	15.21	7.4	14.84	28.92	33.76	4.22	3.54	5.62
Merged-chr1-152592632-1	chr1	152592132	152593132	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	LTR48|LTR|ERV1	32585.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	44.62	45.16	33.3	37.78	18.66	42.6	33.8	30.07	17.49
Merged-chr11-49157576-1	chr11	49157076	49158076	+	709.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2440.0	NM_146276	258273.0	Mm.377407	NM_146276	ENSMUSG00000048378	Olfr1394	MOR280-1	olfactory receptor 1394	protein-coding	9.72	5.53	4.62	6.07	7.46	4.82	1.06	4.86	5.0
Merged-chr2-91495454-3	chr2	91494946	91495946	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 28 of 37)	intron (NM_172668, intron 28 of 37)	-31316.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	31.46	21.2	14.8	20.92	14.0	25.72	34.85	35.37	15.61
Merged-chr8-123406981-3	chr8	123406494	123407494	+	709.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008559)	promoter-TSS (NM_008559)	-88.0	NM_008559	17199.0	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	12.01	2.76	1.85	2.02	1.87	2.41	3.17	0.44	3.75
Merged-chr3-31089199-2	chr3	31088671	31089671	+	709.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5887.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	10.87	8.75	5.55	9.45	3.73	7.23	22.18	12.38	10.62
Merged-chr17-81750267-2	chr17	81749757	81750757	+	709.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11870.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.72	3.69	1.85	8.1	6.53	7.23	6.34	7.07	3.12
Merged-chr14-54391117-2	chr14	54390644	54391644	+	709.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L1_Mur3|LINE|L1	18328.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	39.47	32.25	26.82	63.42	49.92	53.85	8.45	2.65	5.0
Merged-chr3-87015745-2	chr3	87015255	87016255	+	709.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-16415.0	NM_007639	12479.0	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	24.6	15.21	25.9	12.82	13.06	5.63	15.84	10.61	5.62
Merged-chr18-68119936-2	chr18	68119410	68120410	+	709.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	RMER19B|LTR|ERVK	-108036.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.72	6.45	1.85	13.49	9.8	5.63	4.22	4.86	5.0
Merged-chr11-95821654-2	chr11	95821136	95822136	+	709.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-2864.0	NM_153104	237928.0	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	2.29	6.91	1.85	4.72	4.67	8.04	6.34	4.42	2.5
Merged-chr6-47317395-3	chr6	47316875	47317875	+	709.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	72979.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	14.87	10.14	15.72	20.92	14.93	14.47	12.67	11.5	10.62
Merged-chr17-83253271-3	chr17	83252765	83253765	+	709.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37982.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	6.29	1.84	0.0	4.72	0.0	0.0	0.0	0.0	3.12
Merged-chr9-95853103-3	chr9	95852601	95853601	+	709.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4416.0	NR_073361	73410.0	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	10.3	6.45	5.55	4.72	4.2	1.61	6.34	2.65	1.25
Merged-chr8-119836117-1	chr8	119835617	119836617	+	709.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	4462.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	16.02	8.29	11.1	13.49	2.33	9.65	10.56	9.29	3.75
Merged-chr5-143471755-2	chr5	143471264	143472264	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	7271.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	144.16	71.42	56.42	153.16	69.51	53.85	102.45	90.2	61.2
Merged-chr11-44410679-2	chr11	44410178	44411178	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303244, intron 5 of 7)	intron (NM_001303244, intron 5 of 7)	10615.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.15	11.52	10.17	12.14	4.67	16.08	14.79	10.61	15.61
Merged-chr14-54786107-2	chr14	54785605	54786605	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4219.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	5.72	2.76	0.92	3.37	1.4	2.41	3.17	2.65	3.75
Merged-chr6-116461144-1	chr6	116460644	116461644	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009662)	promoter-TSS (NM_009662)	34.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	1.72	5.53	12.95	6.07	9.33	0.0	3.17	1.33	5.0
Merged-chr14-73408455-1	chr14	73407955	73408955	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-23166.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	10.87	8.29	12.02	10.12	9.33	3.22	8.45	6.19	2.5
Merged-chr13-8867552-2	chr13	8867061	8868061	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039388, intron 1 of 13)	URR1B|DNA|hAT-Charlie	3483.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	32.04	42.85	26.82	35.09	25.19	21.7	47.53	76.49	36.22
Merged-chr12-8682202-2	chr12	8681703	8682703	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030723, intron 1 of 20)	MTC|LTR|ERVL-MaLR	7522.0	NM_030723	80913.0	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	3.43	10.14	16.65	12.82	6.53	8.04	8.45	5.75	11.87
Merged-chr1-173739704-2	chr1	173739248	173740248	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	2061.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	137.29	210.12	47.17	157.88	187.07	91.63	133.08	190.57	81.81
Merged-chr7-43798056-2	chr7	43797562	43798562	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008940, exon 1 of 5)	5' UTR (NM_008940, exon 1 of 5)	485.0	NM_008940	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	4.58	1.84	7.4	5.4	4.67	2.41	3.17	0.88	3.12
Merged-chr15-73742078-2	chr15	73741588	73742588	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166388, intron 1 of 5)	intron (NM_001166388, intron 1 of 5)	-5938.0	NM_008975	19245.0	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	6.29	2.76	7.4	8.1	0.93	4.02	3.17	2.21	2.5
Merged-chr7-97076748-1	chr7	97076248	97077248	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5003.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	38.9	42.39	49.02	53.3	43.39	66.71	103.51	89.76	59.33
Merged-chr7-34198072-2	chr7	34197564	34198564	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1394.0	NM_001360710	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	20.59	14.75	12.95	7.42	11.2	9.65	13.73	12.38	17.49
Merged-chr16-65725930-1	chr16	65725430	65726430	+	709.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-89703.0	NM_028572	73569.0	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	1.72	7.83	0.0	2.7	1.4	3.22	5.28	1.77	7.49
Merged-chr12-12267236-2	chr12	12266746	12267746	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	5107.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	38.33	59.44	49.02	52.63	24.26	33.76	54.92	41.12	29.35
Merged-chr9-107963870-2	chr9	107963386	107964386	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011634, intron 10 of 14)	B1_Mur4|SINE|Alu	-11681.0	NM_023738	74153.0	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	6.86	8.29	12.95	6.07	2.33	1.61	3.17	0.88	3.75
Merged-chr6-113663088-2	chr6	113662587	113663587	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	24620.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	192.78	120.73	123.02	177.45	115.69	145.49	154.2	151.66	100.55
Merged-chr7-80230489-3	chr7	80229997	80230997	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291275, intron 2 of 6)	intron (NM_001291275, intron 2 of 6)	2308.0	NM_001291276	23991.0	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	37.18	22.58	23.12	38.46	14.0	30.54	38.02	29.18	19.36
Merged-chr9-22649779-1	chr9	22649279	22650279	+	709.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 15 of 22)	intron (NM_001360259, intron 15 of 22)	174064.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	7.44	4.61	2.77	3.37	7.0	3.22	8.45	0.88	5.0
Merged-chr4-133585061-2	chr4	133584555	133585555	+	709.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172876)	TTS (NM_172876)	682.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	42.9	48.38	24.97	45.88	42.45	25.72	30.63	24.32	17.49
Merged-chr19-55585412-3	chr19	55584916	55585916	+	709.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116788.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	157.89	149.29	119.32	148.44	148.35	118.96	144.7	156.97	102.42
Merged-chr8-83089793-3	chr8	83089248	83090248	+	709.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177378, exon 7 of 7)	3' UTR (NM_177378, exon 7 of 7)	-75604.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	49.77	50.69	45.32	58.7	40.59	51.44	49.64	36.26	28.73
Merged-chr12-17680444-3	chr12	17679927	17680927	+	709.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10382.0	NM_001361645	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	94.96	87.09	78.62	73.54	56.45	69.93	100.34	123.36	63.7
Merged-chr3-127754501-2	chr3	127753998	127754998	+	709.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	26029.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	6.29	5.99	5.55	7.42	5.13	0.0	0.0	2.65	7.49
Merged-chr10-59324545-3	chr10	59324054	59325054	+	709.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	1258.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	41.76	69.12	54.57	27.66	44.32	54.66	64.43	65.44	61.83
Merged-chr14-55823551-3	chr14	55823025	55824025	+	709.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1270.0	NM_001168346	73181.0	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	13.73	4.61	4.62	16.87	7.46	11.25	22.18	3.1	5.0
Merged-chr15-81067282-2	chr15	81066784	81067784	+	709.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	37763.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	10.3	8.29	12.95	18.22	5.13	4.82	4.22	4.42	3.75
Merged-chr2-129630727-2	chr2	129630234	129631234	+	709.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291021, exon 6 of 6)	3' UTR (NM_001291021, exon 6 of 6)	35272.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	17.73	29.95	19.42	23.62	23.33	25.72	21.12	21.67	17.49
Merged-chr10-110805204-2	chr10	110804705	110805705	+	709.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	59766.0	NM_178609	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.0	1.84	7.4	2.7	7.46	3.22	3.17	2.65	0.0
Merged-chr1-23975313-2	chr1	23974810	23975810	+	709.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	30330.0	NM_026503	68002.0	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	2.29	4.61	3.7	4.05	2.33	3.22	4.22	4.86	2.5
Merged-chr1-195013869-1	chr1	195013369	195014369	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3530.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	11.44	22.12	17.57	13.49	16.79	13.66	5.28	5.75	10.62
Merged-chr16-92411607-1	chr16	92411107	92412107	+	709.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-11529.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	29.17	33.18	42.55	39.13	36.39	44.21	26.4	19.9	27.48
Merged-chr3-121629496-3	chr3	121628998	121629998	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13987.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	10.87	5.07	1.85	4.72	1.87	3.22	7.39	6.63	6.87
Merged-chr18-15265692-1	chr18	15265192	15266192	+	709.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114246.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	3.43	0.92	3.7	0.67	2.8	6.43	1.06	1.77	1.25
Merged-chr1-37867938-3	chr1	37867467	37868467	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2669.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	40.62	35.48	24.05	26.99	16.33	11.25	33.8	28.74	21.23
Merged-chr7-63855479-3	chr7	63854997	63855997	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61360.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	2.86	3.69	3.7	10.8	3.27	4.82	0.0	1.33	5.0
Merged-chr1-182868047-3	chr1	182867595	182868595	+	709.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356462, intron 5 of 8)	intron (NM_001356462, intron 5 of 8)	-86693.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	8.01	2.3	2.77	10.8	2.8	1.61	8.45	3.1	0.0
Merged-chr14-52198348-2	chr14	52197848	52198848	+	709.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_201637, exon 37 of 37)	3' UTR (NM_201637, exon 37 of 37)	-1109.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	33.75	32.25	29.6	17.54	30.79	36.97	66.54	53.06	37.47
Merged-chr19-37546424-2	chr19	37545873	37546873	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-4045.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	50.34	44.24	47.17	42.51	32.19	61.89	45.42	37.14	34.35
Merged-chr4-46531015-2	chr4	46530516	46531516	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029077, intron 2 of 5)	intron (NM_029077, intron 2 of 5)	-4885.0	NR_151695	105247126.0	Mm.477962	NR_151695		Gm16731	-	predicted gene, 16731	ncRNA	8.58	14.28	7.4	5.4	10.26	21.7	12.67	8.84	5.0
Merged-chr13-97939040-2	chr13	97938558	97939558	+	709.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012026, intron 31 of 35)	intron (NM_012026, intron 31 of 35)	187946.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	5.15	1.84	0.0	7.42	1.4	2.41	1.06	2.65	1.25
Merged-chr4-148151269-2	chr4	148150822	148151822	+	709.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_015797, exon 1 of 6)	5' UTR (NM_015797, exon 1 of 6)	603.0	NM_001163705	50762.0	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	315.2	321.63	316.33	308.35	311.16	265.25	325.31	309.96	156.13
Merged-chr7-25205949-3	chr7	25205456	25206456	+	709.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207677, intron 4 of 4)	MIRb|SINE|MIR	11769.0	NR_106015	102466794.0		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	10.3	7.37	3.7	15.52	14.93	5.63	9.51	7.07	4.37
Merged-chr10-81560399-3	chr10	81559892	81560892	+	709.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276288, intron 1 of 6)	intron (NM_001276288, intron 1 of 6)	948.0	NM_001276288	14797.0	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	29.75	9.22	17.57	31.04	17.73	27.33	25.35	12.82	13.12
Merged-chr3-136688165-2	chr3	136687671	136688671	+	709.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	18105.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	21.74	18.43	15.72	27.66	22.86	10.45	15.84	13.71	1.25
Merged-chr16-32599445-2	chr16	32598949	32599949	+	709.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9447.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	22.31	42.85	28.67	24.29	21.46	35.37	32.74	22.55	23.73
Merged-chr1-136656747-2	chr1	136656258	136657258	+	709.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26638.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	22.88	28.57	21.27	24.96	34.99	53.85	34.85	25.65	20.61
Merged-chr1-161552214-3	chr1	161551716	161552716	+	709.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57559.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	7.44	10.6	7.4	5.4	7.0	1.61	11.62	3.98	6.25
Merged-chr1-177191808-3	chr1	177191305	177192305	+	709.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	56962.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	14.87	18.43	16.65	16.87	20.53	14.47	24.29	15.48	17.49
Merged-chr18-63653564-2	chr18	63653064	63654064	+	709.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38795.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	8.01	2.76	2.77	2.7	5.6	4.82	2.11	0.0	0.62
Merged-chr12-111878416-3	chr12	111877888	111878888	+	709.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	intron (NM_011625, intron 1 of 16)	29667.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	4.58	4.61	0.0	6.75	0.47	3.22	4.22	2.21	0.0
Merged-chr2-93046252-3	chr2	93045755	93046755	+	709.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177536)	promoter-TSS (NM_001177536)	-111.0	NM_001177536	100042784.0	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	105.83	97.23	86.02	116.05	85.37	81.99	130.97	55.71	53.71
Merged-chr6-72748658-3	chr6	72748136	72749136	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079822, intron 3 of 12)	intron (NM_001079822, intron 3 of 12)	40409.0	NM_001079822	21415.0	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	10.87	11.98	11.1	5.4	4.2	9.65	14.79	11.05	14.99
Merged-chr10-75289622-1	chr10	75289122	75290122	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153406, intron 13 of 15)	intron (NM_153406, intron 13 of 15)	-27255.0	NM_009630	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	4.58	7.83	11.1	9.45	3.73	11.25	6.34	7.96	8.12
Merged-chr6-128931003-1	chr6	128930503	128931503	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106107)	TTS (NR_106107)	842.0	NR_106107	102465757.0		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	11.44	15.67	12.02	13.49	18.19	23.31	8.45	9.29	11.24
Merged-chr9-48493909-1	chr9	48493409	48494409	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144948, intron 2 of 4)	ID_B1|SINE|B4	1421.0	NM_001326355	67010.0	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	124.14	185.24	136.89	112.0	132.02	112.53	109.84	111.43	63.7
Merged-chr1-36088004-1	chr1	36087504	36088504	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	(TG)n|Simple_repeat|Simple_repeat	19604.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	26.31	19.35	29.6	72.87	47.12	69.13	53.87	38.03	22.48
Merged-chr3-116859161-2	chr3	116858667	116859667	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113478)	promoter-TSS (NM_001113478)	-400.0	NM_001113478	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	18.31	16.13	13.87	17.54	9.8	20.09	38.02	26.53	27.48
Merged-chr3-32333204-2	chr3	32332709	32333709	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32280.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	1.72	3.69	0.0	2.02	0.93	0.0	3.17	2.21	2.5
Merged-chr4-46550164-1	chr4	46549664	46550664	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 3 of 11)	intron (NM_001164804, intron 3 of 11)	-14023.0	NM_029077	74735.0	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	12.01	4.15	4.62	10.8	0.93	8.04	5.28	4.42	7.49
Merged-chrX-70954895-1	chrX	70954395	70955395	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-95361.0	NM_001256048	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	1.14	3.69	1.85	8.1	5.6	1.61	5.28	2.65	1.25
Merged-chr14-67716865-1	chr14	67716365	67717365	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	767.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	23.45	19.81	16.65	34.41	25.66	40.19	39.08	30.95	17.49
Merged-chr2-45118228-1	chr2	45117728	45118728	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355288)	promoter-TSS (NM_001355288)	-786.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	167.61	270.48	79.55	153.16	221.13	142.27	204.9	245.84	106.17
Merged-chr17-87285062-1	chr17	87284562	87285562	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028639, intron 1 of 19)	intron (NM_028639, intron 1 of 19)	2176.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	6.29	4.61	10.17	13.49	3.73	10.45	4.22	0.88	3.75
Merged-chr10-68136214-1	chr10	68135714	68136714	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142512.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	96.11	101.37	90.65	157.88	122.23	131.82	166.88	152.55	79.94
Merged-chr3-149426545-3	chr3	149426038	149427038	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151801.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	5.72	5.53	0.0	6.75	7.46	4.02	6.34	7.07	1.25
Merged-chr4-48075687-1	chr4	48075187	48076187	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 7 of 7)	intron (NM_015743, intron 7 of 7)	24441.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	6.86	4.61	6.47	4.05	5.13	4.02	11.62	3.1	6.25
Merged-chr6-113062449-1	chr6	113061949	113062949	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008188, intron 5 of 9)	intron (NM_008188, intron 5 of 9)	14795.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	36.61	56.22	60.12	46.56	45.25	43.4	79.21	76.49	34.97
Merged-chr1-34112167-1	chr1	34111667	34112667	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 5 of 102)	intron (NM_001276764, intron 5 of 102)	-5192.0	NR_105861	102466987.0		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	6.29	10.14	9.25	7.42	8.4	7.23	5.28	6.63	7.49
Merged-chr9-123016175-1	chr9	123015675	123016675	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010620, intron 32 of 34)	B1_Mur4|SINE|Alu	-5151.0	NM_025339	66079.0	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	16.02	17.05	12.95	13.49	13.06	14.47	22.18	13.27	18.11
Merged-chr5-53948765-1	chr5	53948265	53949265	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49758.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	4.0	2.76	9.25	4.72	3.27	2.41	5.28	4.86	5.0
Merged-chr3-37342454-1	chr3	37341954	37342954	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6199.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	3.43	5.07	0.0	10.12	13.06	12.86	3.17	7.52	9.37
Merged-chr11-20215467-1	chr11	20214967	20215967	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	14055.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	21.74	22.12	25.9	25.64	15.39	16.88	14.79	12.82	19.98
Merged-chr17-34282012-1	chr17	34281512	34282512	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010378)	TTS (NM_010378)	5759.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	14.3	9.68	13.87	2.7	1.4	0.8	10.56	10.17	2.5
Merged-chrX-140492472-1	chrX	140491972	140492972	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	35869.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	11.44	12.9	12.95	21.59	16.79	24.92	11.62	17.69	30.6
Merged-chr2-181529269-1	chr2	181528769	181529769	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	intron (NM_001271584, intron 2 of 5)	8784.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	12.59	22.12	11.1	16.87	9.33	35.37	14.79	14.15	18.11
Merged-chr3-22090100-1	chr3	22089600	22090600	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	13448.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	58.35	69.58	45.32	46.56	60.18	40.99	57.03	67.65	33.1
Merged-chr4-13271991-1	chr4	13271491	13272491	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	365154.0	NM_001171801	208820.0	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	1.72	3.69	1.85	3.37	2.33	4.82	3.17	0.0	1.25
Merged-chr2-128804327-1	chr2	128803827	128804827	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13976.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	41.76	49.3	57.35	56.68	46.18	42.6	58.09	49.52	29.35
Merged-chr14-33246597-1	chr14	33246097	33247097	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	Zaphod2|DNA|hAT-Tip100	29774.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	32.61	58.06	30.52	60.05	69.04	63.5	19.01	15.03	16.86
Merged-chr8-80808337-2	chr8	80807841	80808841	+	709.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	-68882.0	NM_053124	93762.0	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	8.01	1.84	1.85	3.37	7.0	8.04	3.17	3.98	2.5
Merged-chr1-44101626-1	chr1	44101126	44102126	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029368, intron 2 of 7)	intron (NM_029368, intron 2 of 7)	815.0	NM_029368	75623.0	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	24.6	31.79	34.22	51.95	41.52	58.68	59.15	44.66	44.34
Merged-chr18-68820091-1	chr18	68819591	68820591	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80691.0	NR_105774	102465183.0		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	2.86	6.45	3.7	5.4	8.86	8.84	4.22	3.98	3.75
Merged-chr13-49267845-1	chr13	49267345	49268345	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015759, intron 15 of 17)	ORR1E|LTR|ERVL-MaLR	-19139.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	2.86	5.53	3.7	8.1	6.53	9.65	3.17	3.54	5.62
Merged-chr18-65490021-1	chr18	65489521	65490521	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	59024.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	20.02	11.98	8.32	22.27	6.53	11.25	9.51	2.21	1.25
Merged-chr10-43689299-1	chr10	43688799	43689799	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56859.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	6.29	3.69	4.62	8.1	3.27	0.0	3.17	3.54	3.75
Merged-chr9-21366626-1	chr9	21366126	21367126	+	709.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1245.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	21.17	20.27	9.25	22.27	16.33	20.9	26.4	26.53	6.87
Merged-chr4-48149434-2	chr4	48148935	48149935	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026343, intron 3 of 7)	intron (NM_026343, intron 3 of 7)	24516.0	NM_026343	67727.0	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	3.43	5.53	7.4	9.45	8.4	4.82	7.39	2.65	5.0
Merged-chr13-100671095-1	chr13	100670595	100671595	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168386, intron 1 of 9)	intron (NM_001168386, intron 1 of 9)	1614.0	NM_001168386	76041.0	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	11.44	15.67	14.8	26.31	20.53	24.11	34.85	39.8	33.72
Merged-chr18-80195532-4	chr18	80195031	80196031	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199197, intron 3 of 5)	intron (NM_199197, intron 3 of 5)	5088.0	NM_199197	68731.0	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	81.23	87.55	64.75	88.39	76.04	116.55	91.89	90.64	82.44
Merged-chr13-54591988-1	chr13	54591488	54592488	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001347512)	TTS (NM_001347512)	1757.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	43.48	29.95	42.55	33.06	20.06	41.8	24.29	15.03	19.98
Merged-chr10-13048850-1	chr10	13048350	13049350	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	40400.0	NM_175102	66125.0	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	10.3	4.15	5.55	1.35	6.06	0.0	3.17	2.21	7.49
Merged-chr11-19930361-1	chr11	19929861	19930861	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	B1_Mur3|SINE|Alu	5919.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	22.88	17.51	1.85	22.27	5.6	6.43	8.45	1.33	5.0
Merged-chr11-118246819-1	chr11	118246319	118247319	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	1773.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	68.07	60.36	55.5	89.74	90.04	64.3	106.67	133.09	59.33
Merged-chr14-61860846-2	chr14	61860346	61861346	+	709.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-178473.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	53.2	50.69	32.37	55.33	44.78	44.21	39.08	41.12	23.73
Merged-chr7-120679206-2	chr7	120678679	120679679	+	708.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164580, intron 1 of 2)	intron (NM_001164580, intron 1 of 2)	1559.0	NM_001164580	233812.0	Mm.276479	NM_001164580	ENSMUSG00000046096	Mosmo	Atthog	modulator of smoothened	protein-coding	18.88	12.9	12.95	8.77	4.67	3.22	8.45	6.19	3.75
Merged-chr15-59719575-2	chr15	59719073	59720073	+	708.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70919.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	7.44	10.6	8.32	10.8	12.6	15.27	8.45	3.54	10.62
Merged-chr2-112240479-3	chr2	112240017	112241017	+	708.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207206, intron 1 of 13)	intron (NM_207206, intron 1 of 13)	676.0	NM_207206	99010.0	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	10.3	3.23	3.7	10.12	4.2	9.65	4.22	4.42	1.25
Merged-chr16-18090288-2	chr16	18089764	18090764	+	708.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1074.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	6.86	6.45	5.55	12.14	5.13	6.43	8.45	0.44	8.74
Merged-chr10-55098499-2	chr10	55097989	55098989	+	708.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-1008428.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	2.29	1.84	3.7	6.75	1.87	8.04	4.22	3.1	6.25
Merged-chr1-153921821-3	chr1	153921318	153922318	+	708.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21889.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	8.01	8.75	6.47	6.07	5.6	4.02	4.22	10.61	2.5
Merged-chrX-12007105-5	chrX	12006581	12007581	+	708.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	73472.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	17.73	15.21	18.5	14.84	15.39	40.19	40.14	34.93	29.35
Merged-chr7-19306509-3	chr7	19306023	19307023	+	708.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347586, intron 3 of 4)	intron (NM_001347586, intron 3 of 4)	3522.0	NM_008036	14282.0	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	16.02	6.45	10.17	11.47	0.93	3.22	7.39	7.07	2.5
Merged-chr10-128340473-3	chr10	128339962	128340962	+	708.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	B1_Mur4|SINE|Alu	2735.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	9.15	18.89	15.72	4.72	11.2	11.25	15.84	7.07	13.12
Merged-chr11-98963882-1	chr11	98963382	98964382	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001361954)	promoter-TSS (NM_001361954)	-990.0	NM_001361954	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	9.15	9.22	14.8	11.47	3.27	8.04	5.28	6.63	15.61
Merged-chr6-72550063-2	chr6	72549514	72550514	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	intron (NM_001271395, intron 1 of 9)	367.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	41.19	55.29	17.57	51.95	68.11	163.17	52.81	66.33	57.46
Merged-chr6-37867065-2	chr6	37866551	37867551	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3760.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	3.43	10.6	9.25	9.45	7.0	14.47	7.39	10.17	11.24
Merged-chr8-22843804-2	chr8	22843327	22844327	+	708.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-15712.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	18.31	4.61	9.25	15.52	7.93	6.43	17.96	3.54	9.99
Merged-chr2-117093127-2	chr2	117092621	117093621	+	708.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27950.0	NM_001277256	114715.0	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	42.9	27.19	36.07	26.31	30.79	20.09	28.52	39.35	29.35
Merged-chr15-91254335-3	chr15	91253839	91254839	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62332.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	17.16	10.6	18.5	16.87	18.19	21.7	11.62	16.36	10.62
Merged-chr9-48163222-1	chr9	48162722	48163722	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177676.0	NM_030069	78252.0	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	9.15	11.06	1.85	4.05	7.93	8.04	4.22	0.88	3.75
Merged-chr14-101560815-3	chr14	101560329	101561329	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	48362.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	42.33	62.67	33.3	41.83	46.65	43.4	57.03	55.71	20.61
Merged-chr6-31128052-3	chr6	31127495	31128495	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-64902.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	37.18	35.02	49.02	37.78	31.72	47.42	29.57	26.97	27.48
Merged-chr19-60820558-1	chr19	60820058	60821058	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026437, intron 3 of 8)	intron (NM_026437, intron 3 of 8)	9003.0	NM_001347464	67894.0	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	34.32	48.38	47.17	39.13	67.18	56.27	52.81	62.35	36.22
Merged-chr10-53461548-1	chr10	53461048	53462048	+	708.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51666.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	2.29	3.69	3.7	6.75	2.8	5.63	3.17	6.19	5.0
Merged-chr2-25074510-2	chr2	25074004	25075004	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5819.0	NM_028093	72090.0	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	5.72	3.23	11.1	4.05	1.4	3.22	5.28	3.1	3.75
Merged-chr7-15912358-3	chr7	15911852	15912852	+	708.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10019.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	4.58	2.76	1.85	2.02	4.2	0.0	0.0	1.33	1.25
Merged-chr7-141568533-2	chr7	141568054	141569054	+	708.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	6374.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	29.17	36.4	38.85	51.95	53.65	44.21	54.92	55.27	27.48
Merged-chr2-30265844-2	chr2	30265364	30266364	+	708.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252568)	promoter-TSS (NM_001252568)	-339.0	NM_001252568	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	78.94	74.19	50.87	100.53	82.11	89.22	84.49	77.82	41.22
Merged-chr19-9916067-3	chr19	9915512	9916512	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16479.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	50.91	44.24	26.82	45.21	31.72	25.72	52.81	39.35	30.6
Merged-chr19-34847161-3	chr19	34846635	34847635	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	-26362.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	69.79	55.75	39.77	74.22	40.59	36.17	80.27	94.18	29.35
Merged-chr2-50652255-3	chr2	50651794	50652794	+	708.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-257390.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	8.58	3.69	3.7	7.42	7.46	4.02	5.28	4.86	5.0
Merged-chr1-154076198-1	chr1	154075698	154076698	+	708.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-124989.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	20.02	25.8	33.3	26.31	23.33	44.21	17.96	19.01	39.35
Merged-chr11-48994208-3	chr11	48993700	48994700	+	708.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1954.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	28.03	20.74	24.05	18.89	10.26	12.06	44.36	33.16	13.74
Merged-chr7-98836811-3	chr7	98836326	98837326	+	708.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285792, intron 2 of 6)	intron (NM_001285792, intron 2 of 6)	1714.0	NM_001285792	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.15	1.84	0.0	3.37	1.4	0.0	3.17	3.1	2.5
Merged-chr15-76700785-3	chr15	76700282	76701282	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027122)	promoter-TSS (NM_027122)	-760.0	NM_027122	69572.0	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	52.06	78.33	74.92	72.19	90.04	67.52	77.1	100.81	46.84
Merged-chr5-5860088-1	chr5	5859588	5860588	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-110771.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	4.0	5.07	3.7	4.05	5.6	3.22	4.22	6.19	1.87
Merged-chr18-36319115-1	chr18	36318615	36319615	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19014.0	NM_001267796	109169.0	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	2.86	0.92	0.0	4.05	0.47	0.0	2.11	3.54	3.75
Merged-chr3-15231811-2	chr3	15231310	15232310	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100492.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.15	5.99	6.47	6.75	7.0	4.82	3.17	7.52	3.75
Merged-chr8-8992857-1	chr8	8992357	8993357	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139431.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	3.43	3.23	5.55	3.37	1.87	4.02	4.22	1.77	0.0
Merged-chr1-82832001-1	chr1	82831501	82832501	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	6.86	5.99	7.4	12.82	9.33	4.82	10.56	4.42	4.37
Merged-chr7-45742647-1	chr7	45742147	45743147	+	708.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360784)	promoter-TSS (NM_001360784)	-169.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	1.72	0.0	3.7	1.35	4.67	1.61	17.96	17.69	7.49
Merged-chrX-94435143-1	chrX	94434643	94435643	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-7589.0	NR_045323	100503393.0	Mm.402891	NR_045323	ENSMUSG00000084904	Gm14827	-	predicted gene 14827	ncRNA	2.29	2.76	1.85	0.67	0.0	4.82	1.06	1.77	2.5
Merged-chr17-80776049-2	chr17	80775562	80776562	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48037.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	22.88	15.21	20.35	23.62	20.53	17.68	31.69	33.6	20.61
Merged-chr4-58985307-1	chr4	58984807	58985807	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025968, intron 1 of 9)	intron (NM_025968, intron 1 of 9)	1771.0	NM_025968	67103.0	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	2.86	4.15	0.0	2.7	5.13	7.23	1.06	3.1	1.25
Merged-chr18-31914638-1	chr18	31914138	31915138	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2735.0	NM_026006	67158.0	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	3.43	4.61	5.55	2.7	0.47	1.61	4.22	3.54	1.87
Merged-chr4-102272523-2	chr4	102272016	102273016	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	17577.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	12.59	24.42	13.87	6.75	9.33	8.84	4.22	3.1	6.25
Merged-chr12-113014864-2	chr12	113014376	113015376	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081170, intron 1 of 23)	CpG	368.0	NM_001291444	217893.0	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	48.05	61.28	78.62	37.11	31.26	68.32	44.36	30.51	44.97
Merged-chr8-46868899-2	chr8	46868403	46869403	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117984.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	126.42	93.54	132.27	97.83	87.24	110.12	90.83	92.41	64.95
Merged-chrX-94142587-1	chrX	94142087	94143087	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-18820.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	9.72	13.82	3.7	12.82	12.6	8.84	4.22	3.1	2.5
Merged-chr11-94129835-2	chr11	94129326	94130326	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81628.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.0	2.3	3.7	5.4	3.73	0.0	2.11	0.0	8.12
Merged-chr8-10883508-2	chr8	10883020	10884020	+	708.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1066.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	9.72	3.69	3.7	6.75	7.0	1.61	13.73	6.63	5.0
Merged-chr12-3833847-1	chr12	3833347	3834347	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	26687.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	70.36	58.98	39.77	62.75	57.85	72.34	94.0	71.19	35.6
Merged-chr10-18049069-1	chr10	18048569	18049569	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6871.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	16.02	14.75	17.57	12.14	11.66	23.31	4.22	4.86	9.99
Merged-chr17-28736104-1	chr17	28735604	28736604	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168508, intron 8 of 11)	PB1D10|SINE|Alu	-33213.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	14.3	31.33	32.37	23.62	22.86	35.37	23.24	17.24	14.99
Merged-chr12-78792633-2	chr12	78792120	78793120	+	708.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019579, intron 1 of 14)	MTD|LTR|ERVL-MaLR	43673.0	NM_019579	56217.0	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	10.3	11.98	3.7	8.1	18.66	17.68	15.84	12.82	6.87
Merged-chr12-81658223-3	chr12	81657745	81658745	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033149, intron 1 of 2)	intron (NM_001033149, intron 1 of 2)	26996.0	NM_001033149	69480.0	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	20.59	14.75	20.35	8.1	5.6	11.25	12.67	10.61	8.12
Merged-chr11-53933502-3	chr11	53932995	53933995	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-41792.0	NM_011396	20520.0	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	17.16	11.06	12.02	13.49	2.8	14.47	9.51	6.63	18.74
Merged-chr5-97113682-3	chr5	97113155	97114155	+	708.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-2059.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	10.3	6.45	20.35	3.37	5.13	6.43	2.11	7.96	9.37
Merged-chr16-92695620-3	chr16	92695142	92696142	+	708.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001111021, exon 3 of 8)	exon (NM_001111021, exon 3 of 8)	1687.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	41.19	40.09	31.45	26.99	17.26	13.66	26.4	16.8	8.74
Merged-chr1-87607847-2	chr1	87607316	87608316	+	708.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12496.0	NM_001110193	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	13.73	9.22	7.4	12.14	16.33	10.45	8.45	4.42	3.75
Merged-chr3-95758645-2	chr3	95758142	95759142	+	708.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3665.0	NR_151588	71807.0	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1|thrRS	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	8.01	2.3	3.7	9.45	1.87	1.61	4.22	3.1	1.25
Merged-chr5-114651569-2	chr5	114651046	114652046	+	708.357178	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	6875.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	35.47	47.46	46.25	35.76	36.39	34.56	11.62	7.52	5.0
Merged-chr17-34356110-3	chr17	34355621	34356621	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_079835, intron 1 of 8)	MTD|LTR|ERVL-MaLR	1299.0	NM_079835	547431.0	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	34.9	32.25	37.0	21.59	17.26	20.9	32.74	32.28	19.36
Merged-chr13-24608144-1	chr13	24607644	24608644	+	708.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286100, intron 1 of 22)	intron (NM_001286100, intron 1 of 22)	-3377.0	NR_024599	76024.0	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	1.72	6.45	5.55	8.77	3.27	8.84	1.06	2.21	2.5
Merged-chr4-99111922-3	chr4	99111425	99112425	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	MLT1K|LTR|ERVL-MaLR	8990.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	9.72	4.15	8.32	6.75	6.53	15.27	4.22	2.65	12.49
Merged-chr17-24676350-3	chr17	24675855	24676855	+	708.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348231, intron 1 of 11)	intron (NM_001348231, intron 1 of 11)	6668.0	NM_183149	213753.0	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	3.43	3.23	1.85	4.05	2.33	1.61	3.17	1.33	0.62
Merged-chr19-47137864-1	chr19	47137364	47138364	+	708.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133746, intron 1 of 2)	intron (NM_133746, intron 1 of 2)	430.0	NM_133746	72691.0	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	132.72	108.28	117.47	145.06	139.02	144.68	174.27	195.88	125.53
Merged-chr17-34980775-3	chr17	34980293	34981293	+	708.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1061.0	NM_001110101	27756.0	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	52.06	57.14	24.97	68.15	48.98	32.96	62.31	77.38	23.73
Merged-chr4-130811893-3	chr4	130811396	130812396	+	708.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	19359.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	35.47	27.19	45.32	33.06	31.72	65.11	71.82	60.58	45.59
Merged-chr11-80489983-2	chr11	80489524	80490524	+	708.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177390, intron 21 of 21)	intron (NM_177390, intron 21 of 21)	13001.0	NM_009871	12569.0	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	8.01	0.92	4.62	4.72	2.33	5.63	0.0	0.88	1.25
Merged-chr17-29514593-3	chr17	29514085	29515085	+	708.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23540.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	14.87	14.28	20.35	15.52	4.67	1.61	10.56	11.94	7.49
Merged-chr3-105688921-3	chr3	105688406	105689406	+	708.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_017397	53975.0	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	29.75	30.41	35.15	41.16	31.26	36.97	28.52	19.9	24.36
Merged-chr14-31017813-1	chr14	31017313	31018313	+	708.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_153547, exon 2 of 15)	exon (NM_153547, exon 2 of 15)	1318.0	NM_153547	30877.0	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	28.03	23.96	17.57	41.83	20.06	21.7	28.52	28.3	15.61
Merged-chr1-136670642-2	chr1	136670112	136671112	+	708.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12784.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	12.59	10.14	25.9	33.74	32.66	36.17	32.74	32.28	26.85
Merged-chr9-78477388-2	chr9	78476916	78477916	+	708.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4308.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	18.88	17.05	15.72	16.19	9.8	34.56	19.01	13.27	11.87
Merged-chr11-97801728-3	chr11	97801254	97802254	+	708.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010688, intron 1 of 6)	intron (NM_010688, intron 1 of 6)	2189.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	24.6	15.21	12.95	20.92	15.39	20.09	26.4	19.46	11.24
Merged-chr4-138038591-3	chr4	138038109	138039109	+	708.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	40784.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	30.32	17.05	43.47	29.69	27.99	26.53	14.79	10.61	9.37
Merged-chrX-166351994-3	chrX	166351494	166352494	+	708.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177958, intron 1 of 6)	intron (NM_001177958, intron 1 of 6)	7441.0	NM_001177960	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	1.14	3.69	1.85	0.67	1.4	1.61	1.06	0.44	1.25
Merged-chr18-52956631-2	chr18	52956139	52957139	+	708.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	188495.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	2.86	1.84	4.62	1.35	1.4	0.0	1.06	2.21	0.62
Merged-chr5-147825802-2	chr5	147825299	147826299	+	708.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34829.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.43	1.84	1.85	2.02	2.8	1.61	4.22	1.77	5.0
Merged-chr6-134469419-3	chr6	134468913	134469913	+	708.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008514, intron 13 of 22)	intron (NM_008514, intron 13 of 22)	54985.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.72	4.15	7.4	4.72	4.2	3.22	6.34	7.52	4.37
Merged-chr8-37063967-3	chr8	37063475	37064475	+	708.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39737.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.43	5.53	3.7	0.0	2.8	0.0	4.22	2.21	3.75
Merged-chr19-26749265-2	chr19	26748761	26749761	+	708.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026003, intron 1 of 8)	intron (NM_026003, intron 1 of 8)	858.0	NM_026003	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	27.46	37.32	32.37	37.11	47.12	41.8	79.21	56.16	59.95
Merged-chr3-106568701-1	chr3	106568201	106569201	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025582, intron 5 of 6)	Lx7|LINE|L1	-20899.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	9.15	9.22	14.8	8.1	13.53	10.45	13.73	10.17	12.49
Merged-chr4-3513027-1	chr4	3512527	3513527	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24063.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	30.89	25.8	38.85	29.01	19.59	11.25	46.47	27.86	20.61
Merged-chr17-81787557-2	chr17	81787056	81788056	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49169.0	NM_011406	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	4.0	1.84	5.55	2.7	3.27	0.0	4.22	2.21	1.25
Merged-chr15-88537367-2	chr15	88536882	88537882	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62920.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	5.15	3.69	1.85	4.72	4.67	1.61	1.06	1.77	1.25
Merged-chr13-73508968-1	chr13	73508468	73509468	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-27779.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.58	3.23	12.95	5.4	3.73	9.65	6.34	2.21	3.12
Merged-chr3-103874509-2	chr3	103874003	103875003	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104070, intron 6 of 22)	intron (NR_104070, intron 6 of 22)	14226.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	20.02	20.74	27.75	21.59	20.06	33.76	29.57	33.6	14.99
Merged-chr1-152266558-1	chr1	152266058	152267058	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	120124.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	1.14	5.07	3.7	1.35	1.87	0.0	3.17	2.65	7.49
Merged-chr1-125459329-2	chr1	125458829	125459829	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-23602.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	47.48	71.88	43.47	81.64	59.25	57.87	86.61	99.05	43.72
Merged-chr2-72367403-1	chr2	72366903	72367903	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 4 of 19)	intron (NM_023057, intron 4 of 19)	81702.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	12.59	21.2	25.9	7.42	9.8	8.84	38.02	34.05	16.24
Merged-chr15-96474854-2	chr15	96474360	96475360	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14017.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	9.72	11.52	17.57	30.36	33.59	19.29	9.51	18.57	12.49
Merged-chr3-146752960-1	chr3	146752460	146753460	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164200, intron 3 of 9)	intron (NM_001164200, intron 3 of 9)	17278.0	NM_001164198	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.29	8.75	22.2	18.22	13.53	11.25	16.9	10.61	6.25
Merged-chr5-67257626-1	chr5	67257126	67258126	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2939.0	NM_001285452	67878.0	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.43	0.0	1.85	3.37	0.0	4.82	9.51	4.86	6.25
Merged-chr1-74077527-1	chr1	74077027	74078027	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289895, intron 2 of 32)	intron (NM_001289895, intron 2 of 32)	46920.0	NM_027884	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	3.43	0.0	1.85	3.37	1.87	4.82	1.06	0.88	3.75
Merged-chr8-80949448-1	chr8	80948948	80949948	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65458.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	94.39	109.67	101.74	130.9	102.63	146.29	183.78	153.87	110.54
Merged-chr7-4034462-2	chr7	4033958	4034958	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302675, intron 2 of 6)	Lx5b|LINE|L1	28746.0	NM_001302677	52855.0	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	6.29	11.52	12.95	8.1	8.86	11.25	17.96	16.36	7.49
Merged-chr3-54493789-2	chr3	54493293	54494293	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132686.0	NM_015784	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	9.72	11.98	3.7	4.72	3.73	3.22	7.39	3.98	5.0
Merged-chr9-25578369-1	chr9	25577869	25578869	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	96772.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	4.58	1.84	11.1	2.7	2.33	2.41	3.17	2.21	8.12
Merged-chrX-53610784-1	chrX	53610284	53611284	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	2862.0	NM_028375	72865.0	Mm.158897	NM_028375	ENSMUSG00000051851	Rtl8c	2900027G03Rik|Cxx1c|Mar8.1|Mart8a	retrotransposon Gag like 8C	protein-coding	1.72	1.38	0.0	0.0	0.93	1.61	4.22	0.0	2.5
Merged-chr3-65801169-2	chr3	65800679	65801679	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 9 of 12)	MTC|LTR|ERVL-MaLR	134951.0	NM_001166659	624866.0	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	6.86	6.45	3.7	8.77	7.93	3.22	4.22	3.1	8.74
Merged-chr12-10589871-2	chr12	10589355	10590355	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143467.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	2.86	1.38	1.85	2.7	3.73	1.61	1.06	2.65	2.5
Merged-chr14-100026205-1	chr14	100025705	100026705	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	123591.0	NM_010636	16597.0	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	4.0	3.69	1.85	2.02	7.0	2.41	2.11	13.71	1.87
Merged-chr11-83472447-1	chr11	83471947	83472947	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027427)	promoter-TSS (NM_027427)	-661.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	53.77	42.39	47.17	69.5	48.98	59.48	57.03	69.42	24.36
Merged-chr2-132284996-2	chr2	132284415	132285415	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291040, intron 1 of 3)	intron (NM_001291040, intron 1 of 3)	-1024.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	13.16	23.96	27.75	24.29	14.46	28.13	17.96	13.71	26.85
Merged-chr10-8011240-1	chr10	8010740	8011740	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55117.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	19.45	26.26	9.25	34.41	19.59	25.72	13.73	8.4	11.24
Merged-chr2-160369587-1	chr2	160369087	160370087	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2522.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.01	13.82	13.87	14.17	9.8	21.7	20.07	14.15	14.36
Merged-chr1-149948575-1	chr1	149948075	149949075	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	intron (NM_008869, intron 1 of 17)	12715.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	30.32	53.91	35.15	26.31	28.46	35.37	45.42	40.24	34.35
Merged-chr13-99192798-1	chr13	99192298	99193298	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	7975.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	21.17	30.41	31.45	39.81	23.33	21.7	33.8	19.9	7.49
Merged-chr16-11434451-1	chr16	11433951	11434951	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 11 of 20)	intron (NM_028964, intron 11 of 20)	28803.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	43.48	26.73	30.52	40.48	41.99	49.83	23.24	32.72	28.73
Merged-chr3-122466254-1	chr3	122465754	122466754	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-17315.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	4.0	2.76	3.7	2.02	3.27	3.22	3.17	0.0	3.12
Merged-chr6-124282907-1	chr6	124282407	124283407	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21744.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	18.31	20.74	8.32	13.49	8.86	8.84	14.79	8.84	23.11
Merged-chr13-113514208-1	chr13	113513708	113514708	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11364.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	30.32	11.98	12.95	4.72	6.06	4.02	7.39	3.54	3.12
Merged-chr13-73505863-1	chr13	73505363	73506363	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145376, intron 9 of 13)	intron (NM_145376, intron 9 of 13)	-30884.0	NM_010020	13162.0	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	4.58	4.61	6.47	5.4	1.4	3.22	2.11	1.77	7.49
Merged-chr2-19300888-2	chr2	19300382	19301382	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271565, intron 17 of 17)	intron (NM_001271565, intron 17 of 17)	-43435.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	32.04	40.09	18.5	23.62	20.99	19.29	26.4	29.18	8.12
Merged-chr18-9758489-1	chr18	9757989	9758989	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	intron (NM_130449, intron 2 of 9)	50841.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	4.0	10.14	12.95	24.29	17.26	16.08	5.28	1.77	8.74
Merged-chr1-106822138-1	chr1	106821638	106822638	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25413.0	NM_009190	20479.0	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	2.86	3.23	0.0	0.67	5.6	1.61	7.39	2.21	5.62
Merged-chr9-57759510-2	chr9	57759014	57760014	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007713, intron 3 of 12)	intron (NM_007713, intron 3 of 12)	6346.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	2.29	5.99	7.4	9.45	3.73	0.0	5.28	2.21	6.87
Merged-chr10-62491027-1	chr10	62490527	62491527	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-4222.0	NM_001358543	30930.0	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	43.48	34.1	11.1	45.21	44.78	45.82	38.02	43.33	31.23
Merged-chr7-72240224-1	chr7	72239724	72240724	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 4 of 22)	intron (NM_001024703, intron 4 of 22)	66371.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	8.58	5.07	0.0	2.02	0.0	0.0	0.0	1.33	1.25
Merged-chr16-14439301-1	chr16	14438801	14439801	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008576, intron 14 of 30)	intron (NM_008576, intron 14 of 30)	77743.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	8.01	5.99	16.65	4.05	5.6	11.25	6.34	2.65	11.24
Merged-chr9-114887830-1	chr9	114887330	114888330	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-43678.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	8.58	1.84	1.85	2.7	5.13	3.22	3.17	2.21	5.62
Merged-chr13-113470359-2	chr13	113469907	113470907	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	(TC)n|Simple_repeat|Simple_repeat	32437.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	0.57	4.15	0.0	14.84	7.0	3.22	12.67	9.29	10.62
Merged-chr17-36892493-2	chr17	36891992	36892992	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2367.0	NM_001172168	195359.0	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	4.0	1.84	3.7	2.7	1.87	1.61	3.17	5.75	3.75
Merged-chr15-25557290-1	chr15	25556790	25557790	+	708.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-65260.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	16.59	8.29	10.17	4.05	4.2	3.22	7.39	3.54	8.12
Merged-chr7-118114728-1	chr7	118114228	118115228	+	708.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	1419.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	30.32	35.48	28.67	35.09	17.26	27.33	46.47	36.7	9.99
Merged-chr1-91455563-1	chr1	91455063	91456063	+	708.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	3765.0	NM_011066	18627.0	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	72.08	55.75	24.05	85.01	58.78	52.25	130.97	74.28	56.21
Merged-chr17-35873924-3	chr17	35873422	35874422	+	707.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175242, exon 2 of 3)	exon (NM_175242, exon 2 of 3)	-5856.0	NM_026987	69192.0	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	10.87	13.36	14.8	14.17	5.13	24.92	9.51	5.31	6.25
Merged-chr13-58273917-5	chr13	58273389	58274389	+	707.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019832, intron 1 of 11)	CpG	299.0	NM_019832	56278.0	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	29.17	10.14	7.4	18.22	8.4	12.06	21.12	4.86	8.74
Merged-chr10-127049590-3	chr10	127049084	127050084	+	707.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010009, intron 2 of 8)	intron (NM_010009, intron 2 of 8)	1338.0	NM_010009	13115.0	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	4.0	1.84	1.85	1.35	0.47	1.61	3.17	2.21	2.5
Merged-chr3-133757976-2	chr3	133757486	133758486	+	707.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-213596.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	14.87	11.06	12.95	5.4	10.73	9.65	6.34	13.27	3.12
Merged-chr17-40763848-3	chr17	40763343	40764343	+	707.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009420)	TTS (NM_009420)	30303.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	9.72	14.28	13.87	6.07	3.73	8.04	11.62	9.73	9.99
Merged-chr2-128467709-3	chr2	128467207	128468207	+	707.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38356.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	11.44	7.83	1.85	0.0	1.87	3.22	3.17	6.19	13.74
Merged-chr1-177702487-4	chr1	177701979	177702979	+	707.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27335.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	13.16	12.44	1.85	28.34	13.06	14.47	41.19	22.99	16.24
Merged-chr4-24899369-2	chr4	24898870	24899870	+	707.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026742, intron 2 of 2)	L2a|LINE|L2	1287.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	9.15	16.13	2.77	8.77	5.6	15.27	16.9	7.96	9.99
Merged-chr19-41514252-2	chr19	41513761	41514761	+	707.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-10991.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	8.58	8.75	1.85	14.84	9.8	17.68	7.39	6.63	6.25
Merged-chr2-145827344-3	chr2	145826837	145827837	+	707.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	B1F|SINE|Alu	41221.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	46.91	70.04	73.07	67.47	49.45	85.2	54.92	83.57	79.94
Merged-chr8-85560149-2	chr8	85559639	85560639	+	707.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-4868.0	NM_019794	56445.0	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	16.02	18.89	25.9	16.19	12.6	20.9	42.25	44.22	28.73
Merged-chr1-171826250-4	chr1	171825772	171826772	+	707.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg2|LINE|L1	-13425.0	NM_001252472	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	52.06	50.69	49.95	82.32	80.71	79.58	49.64	59.25	41.22
Merged-chr1-153953954-3	chr1	153953461	153954461	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54032.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.15	5.07	7.4	6.07	6.06	1.61	2.11	2.21	3.12
Merged-chr5-34210438-3	chr5	34209927	34210927	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 8 of 12)	intron (NM_001015039, intron 8 of 12)	-22717.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	2.29	3.69	0.0	4.72	1.87	3.22	1.06	1.33	5.0
Merged-chr13-9098399-3	chr13	9097911	9098911	+	707.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	4530.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	45.76	50.69	38.85	39.13	18.66	37.78	61.26	52.62	34.97
Merged-chr15-86140555-1	chr15	86140055	86141055	+	707.75	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145475, exon 13 of 13)	3' UTR (NM_145475, exon 13 of 13)	-45173.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	2.86	2.76	2.77	7.42	5.13	8.04	7.39	0.88	1.25
Merged-chr7-109028460-2	chr7	109027958	109028958	+	707.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021885, intron 9 of 11)	intron (NM_021885, intron 9 of 11)	17578.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	4.0	3.69	4.62	2.7	2.33	4.82	4.22	5.75	3.75
Merged-chr13-49192632-4	chr13	49192092	49193092	+	707.6875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5045.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	68.65	72.34	63.82	115.38	87.7	86.01	121.46	101.26	69.95
Merged-chr3-117868287-1	chr3	117867787	117868787	+	707.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190156, intron 1 of 7)	intron (NM_001190156, intron 1 of 7)	649.0	NM_001190156	76561.0	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	14.87	9.68	21.27	16.19	16.33	12.86	11.62	12.82	14.36
Merged-chr7-126378031-3	chr7	126377533	126378533	+	707.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023712)	promoter-TSS (NM_023712)	-99.0	NR_045537	73658.0	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	29.75	42.85	23.12	41.16	28.46	65.91	51.75	52.18	31.85
Merged-chr15-59375115-2	chr15	59374593	59375593	+	707.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153548)	promoter-TSS (NM_153548)	895.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	71.51	69.12	32.37	81.64	75.57	47.42	73.93	66.77	18.11
Merged-chr1-170867032-2	chr1	170866529	170867529	+	707.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 1 of 15)	intron (NM_001081304, intron 1 of 15)	742.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	65.79	94.0	48.1	73.54	43.39	27.33	61.26	60.13	25.61
Merged-chr4-99192852-2	chr4	99192410	99193410	+	707.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-1024.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	84.66	154.36	82.32	105.93	96.1	71.54	127.8	133.09	61.83
Merged-chr13-109229368-2	chr13	109228884	109229884	+	707.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-95360.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	6.86	4.61	3.7	3.37	2.8	0.0	6.34	2.65	6.25
Merged-chr1-74437572-2	chr1	74437068	74438068	+	707.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28184.0	NM_009509	22349.0	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	121.85	92.62	46.25	134.94	95.17	46.62	87.66	57.48	35.6
Merged-chr12-73358810-2	chr12	73358280	73359280	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50783.0	NR_046013	380765.0	Mm.490476	NR_046013	ENSMUSG00000056359	D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	4.58	8.29	6.47	9.45	2.33	3.22	21.12	14.59	12.49
Merged-chr11-88234171-2	chr11	88233672	88234672	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29784.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	12.59	9.68	13.87	6.07	6.53	8.04	12.67	22.55	16.24
Merged-chr5-5494478-2	chr5	5493979	5494979	+	707.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15336.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	2.86	2.76	10.17	3.37	1.87	7.23	4.22	3.1	3.75
Merged-chr2-132316131-3	chr2	132315624	132316624	+	707.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30185.0	NM_001291039	110911.0	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	5.72	1.84	3.7	2.02	5.13	4.82	6.34	0.44	1.87
Merged-chr7-110669594-3	chr7	110669094	110670094	+	707.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41937.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	15.45	12.9	5.55	25.64	20.06	12.06	16.9	22.55	16.24
Merged-chr5-147363221-2	chr5	147362734	147363734	+	707.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010229, intron 9 of 23)	intron (NM_010229, intron 9 of 23)	37255.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	5.72	2.3	1.85	1.35	1.4	3.22	5.28	0.88	6.25
Merged-chr9-77725727-2	chr9	77725220	77726220	+	707.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-28815.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	22.31	22.58	9.25	23.62	18.19	15.27	46.47	26.97	24.98
Merged-chr8-70585436-3	chr8	70584942	70585942	+	707.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 7 of 11)	intron (NM_007924, intron 7 of 11)	-9039.0	NM_023627	71780.0	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	5.72	2.3	7.4	4.72	0.93	5.63	5.28	2.65	7.49
Merged-chr1-57868828-1	chr1	57868328	57869328	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164566, intron 2 of 11)	intron (NM_001164566, intron 2 of 11)	23257.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	3.43	2.3	1.85	4.05	2.8	4.02	1.06	2.65	2.5
Merged-chr3-61306714-2	chr3	61306204	61307204	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57803.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.43	0.0	0.92	4.05	4.67	9.65	6.34	3.98	6.87
Merged-chr7-118637602-1	chr7	118637102	118638102	+	707.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028930, intron 1 of 17)	ORR1D2|LTR|ERVL-MaLR	3866.0	NM_028930	74424.0	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	4.0	2.3	3.7	6.75	3.27	5.63	8.45	4.86	3.75
Merged-chr6-136967670-2	chr6	136967152	136968152	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13129.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	1.72	2.3	5.55	23.62	14.0	16.08	20.07	9.29	6.25
Merged-chr15-80081358-1	chr15	80080858	80081858	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013762, intron 3 of 9)	intron (NM_013762, intron 3 of 9)	1548.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	10.87	12.44	19.42	22.94	15.86	35.37	20.07	15.48	34.97
Merged-chr15-35870511-2	chr15	35870013	35871013	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 44 of 61)	intron (NM_177151, intron 44 of 61)	67733.0	NM_053071	12864.0	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	10.87	24.88	29.6	20.24	11.66	38.58	13.73	16.8	18.74
Merged-chr10-21383114-1	chr10	21382614	21383614	+	707.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178713, intron 3 of 6)	intron (NM_178713, intron 3 of 6)	5814.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	1.72	2.76	1.85	4.72	6.06	3.22	1.06	2.21	1.87
Merged-chr9-106236296-2	chr9	106235803	106236803	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020559, intron 9 of 10)	intron (NM_020559, intron 9 of 10)	11427.0	NM_001291835	11655.0	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	9.72	6.91	12.95	10.8	8.86	17.68	17.96	5.75	3.75
Merged-chr15-59249020-1	chr15	59248520	59249520	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57928.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.0	3.23	3.7	9.45	7.46	3.22	2.11	2.65	6.87
Merged-chr17-36257509-1	chr17	36257009	36258009	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026308, exon 3 of 5)	exon (NM_026308, exon 3 of 5)	337.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	28.03	24.88	17.57	18.89	20.53	29.74	32.74	28.74	19.98
Merged-chrX-164066408-2	chrX	164065891	164066891	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9744.0	NM_001308386	20438.0	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	siah E3 ubiquitin protein ligase 1B	protein-coding	0.0	4.15	1.85	0.0	1.87	0.0	1.06	0.0	3.75
Merged-chr13-45458242-1	chr13	45457742	45458742	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-49202.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	10.87	8.29	5.55	12.14	11.66	12.86	7.39	3.54	8.74
Merged-chr5-121733993-3	chr5	121733500	121734500	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	-4532.0	NM_001359153	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	17.73	11.52	32.37	18.89	14.93	38.58	20.07	19.01	8.74
Merged-chr14-47445101-1	chr14	47444601	47445601	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-26694.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	14.3	10.14	27.75	31.71	16.33	17.68	20.07	23.88	8.74
Merged-chr15-61157695-2	chr15	61157182	61158182	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-236412.0	NM_001081067	117586.0	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	2.86	3.69	5.55	2.7	1.4	1.61	3.17	1.77	2.5
Merged-chr2-33909196-1	chr2	33908696	33909696	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-21250.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	1.72	0.92	4.62	16.87	10.26	7.23	15.84	6.19	10.62
Merged-chr9-35479696-2	chr9	35479219	35480219	+	707.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021339, intron 13 of 18)	intron (NM_021339, intron 13 of 18)	27643.0	NM_021339	57810.0	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	2.29	5.99	5.55	6.75	6.06	6.43	5.28	3.54	0.0
Merged-chr1-36598524-2	chr1	36598010	36599010	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-5178.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	8.01	9.68	7.4	6.07	2.8	10.45	4.22	6.19	7.49
Merged-chr8-114438458-2	chr8	114437959	114438959	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1193.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	7.44	11.06	5.55	5.4	6.06	11.25	3.17	3.1	5.0
Merged-chr12-42187319-1	chr12	42186819	42187819	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2B|LINE|L1	-701262.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.29	2.76	0.0	12.82	8.86	16.88	5.28	7.96	11.24
Merged-chr2-93943227-1	chr2	93942727	93943727	+	707.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13873.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	1.72	2.76	3.7	5.4	5.6	8.04	6.34	3.98	3.75
Merged-chr10-91180140-3	chr10	91179685	91180685	+	707.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8566.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	33.75	38.25	40.7	20.92	25.66	38.58	42.25	47.75	45.59
Merged-chr1-91380662-2	chr1	91380171	91381171	+	707.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023343, intron 9 of 11)	intron (NM_023343, intron 9 of 11)	14241.0	NM_173395	227358.0	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	5.15	4.15	3.7	3.37	1.87	4.82	5.28	4.86	1.25
Merged-chr7-118490782-3	chr7	118490275	118491275	+	707.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033380, exon 1 of 1)	exon (NM_001033380, exon 1 of 1)	1200.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	90.96	95.84	131.34	90.41	96.1	98.87	110.9	118.06	77.44
Merged-chr2-132631022-2	chr2	132630531	132631531	+	707.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033468, intron 4 of 5)	intron (NR_033468, intron 4 of 5)	32835.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	28.6	30.41	42.55	33.06	33.12	36.97	19.01	30.51	39.35
Merged-chr14-62888046-2	chr14	62887541	62888541	+	707.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175546, intron 2 of 11)	Lx6|LINE|L1	22499.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	42.33	35.48	38.85	40.48	21.46	29.74	98.23	109.22	46.22
Merged-chr2-152951680-1	chr2	152951180	152952180	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145744)	promoter-TSS (NM_145744)	-98.0	NM_001159376	252864.0	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	5.72	2.76	0.0	8.77	2.33	4.02	5.28	3.1	4.37
Merged-chr16-30236525-3	chr16	30236048	30237048	+	707.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30984.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	2.86	0.92	1.85	4.72	4.2	1.61	4.22	0.88	8.12
Merged-chr1-131638350-1	chr1	131637850	131638850	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007799)	promoter-TSS (NM_007799)	36.0	NM_007799	13034.0	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	5.72	4.61	7.4	5.4	8.4	5.63	4.22	4.86	1.87
Merged-chr2-43806552-1	chr2	43806052	43807052	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	57728.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	49.2	35.94	37.0	28.34	32.66	39.39	48.58	42.89	36.22
Merged-chrX-134599583-1	chrX	134599083	134600083	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013463, intron 1 of 6)	intron (NM_013463, intron 1 of 6)	1422.0	NM_013463	11605.0	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	37.76	40.09	18.5	83.66	118.49	44.21	63.37	62.79	19.36
Merged-chr16-32607717-1	chr16	32607217	32608217	+	707.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1179.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	20.02	28.11	19.42	20.92	11.66	32.96	15.84	6.63	13.74
Merged-chr5-99220546-3	chr5	99220036	99221036	+	707.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	intron (NM_181318, intron 13 of 13)	32391.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	37.18	53.91	15.72	39.13	24.26	40.19	24.29	29.63	17.49
Merged-chr12-4159391-1	chr12	4158891	4159891	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	25238.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	18.88	15.67	15.72	20.24	24.72	40.19	6.34	7.96	16.86
Merged-chr19-12567180-2	chr19	12566676	12567676	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6334.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	21.17	15.21	18.5	10.12	8.4	23.31	27.46	26.09	34.97
Merged-chr13-90527176-2	chr13	90526665	90527665	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME1|LINE|L1	378190.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	2.86	6.45	4.62	4.72	4.2	3.22	5.28	4.86	1.87
Merged-chr3-37956792-3	chr3	37956280	37957280	+	707.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040559, intron 2 of 3)	intron (NR_040559, intron 2 of 3)	57967.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	5.15	2.76	5.55	4.72	5.13	6.43	1.06	5.31	0.0
Merged-chr5-74957856-2	chr5	74957360	74958360	+	707.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	8666.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	30.32	20.74	33.3	28.34	50.85	49.83	21.12	28.3	19.36
Merged-chr3-22061358-2	chr3	22060861	22061861	+	707.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15291.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.58	5.07	5.55	8.1	3.73	3.22	3.17	3.1	5.0
Merged-chr16-16584829-3	chr16	16584333	16585333	+	707.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	15145.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	8.01	5.99	1.85	6.75	4.2	2.41	3.17	3.54	4.37
Merged-chr3-10087726-1	chr3	10087226	10088226	+	707.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045710)	promoter-TSS (NR_045710)	-551.0	NR_045710	100041480.0	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	-	myelin basic protein expression factor 2, repressor pseudogene	pseudo	0.0	0.46	0.0	0.0	0.0	0.0	5.28	1.77	1.25
Merged-chr7-44247244-2	chr7	44246736	44247736	+	707.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025880, intron 1 of 5)	intron (NM_025880, intron 1 of 5)	514.0	NM_025880	668661.0	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	92.1	98.61	89.72	114.03	123.16	121.37	107.73	91.09	78.69
Merged-chr16-33625725-2	chr16	33625204	33626204	+	707.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 8 of 11)	intron (NM_001083902, intron 8 of 11)	-58762.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	43.48	35.94	32.37	23.62	17.73	23.31	43.3	29.63	21.23
Merged-chr6-26297566-2	chr6	26297056	26298056	+	707.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	366130.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	12.01	8.29	3.7	5.4	3.73	11.25	6.34	6.19	21.23
Merged-chr10-118592824-2	chr10	118592325	118593325	+	707.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36300.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	7.44	5.53	1.85	5.4	1.87	6.43	3.17	5.75	7.49
Merged-chr4-132947813-2	chr4	132947311	132948311	+	707.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25260.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	76.08	58.06	55.5	74.22	62.51	92.44	73.93	70.75	63.7
Merged-chr8-94228102-3	chr8	94227588	94228588	+	707.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172410, intron 3 of 22)	intron (NM_172410, intron 3 of 22)	13524.0	NM_172410	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	17.16	14.28	24.05	16.19	10.26	12.86	12.67	11.05	14.99
Merged-chr3-144705346-2	chr3	144704851	144705851	+	707.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	14984.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	18.88	37.78	25.9	25.64	22.86	30.54	43.3	27.41	41.84
Merged-chr19-42518320-3	chr19	42517844	42518844	+	707.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-461.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	84.09	61.75	38.85	49.93	58.31	72.34	61.26	67.21	44.34
Merged-chr7-66110043-3	chr7	66109530	66110530	+	707.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081163, exon 1 of 3)	exon (NM_001081163, exon 1 of 3)	515.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	27.46	20.27	10.17	32.39	17.73	14.47	25.35	8.4	13.12
Merged-chr9-40345313-3	chr9	40344815	40345815	+	707.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	930.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	14.87	11.52	5.55	11.47	11.66	4.82	16.9	5.31	3.75
Merged-chr11-3676612-2	chr11	3676130	3677130	+	707.041626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198162, intron 8 of 25)	intron (NM_198162, intron 8 of 25)	17930.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	15.45	10.14	5.55	14.84	9.33	22.51	3.17	7.96	11.87
Merged-chr14-9426901-1	chr14	9426401	9427401	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-457194.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.86	1.84	0.0	6.07	7.0	0.0	0.0	1.33	2.5
Merged-chr2-113819600-1	chr2	113819100	113820100	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	9491.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	17.16	16.59	2.77	22.27	24.26	17.68	21.12	18.57	6.25
Merged-chr17-22165949-1	chr17	22165449	22166449	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177596)	promoter-TSS (NM_177596)	28.0	NM_177596	210853.0	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	24.03	41.47	8.32	33.74	37.32	23.31	6.34	2.21	5.0
Merged-chr8-120678618-2	chr8	120678114	120679114	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10294.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	2.29	0.92	3.7	6.75	0.47	3.22	4.22	1.77	1.87
Merged-chr4-150031395-1	chr4	150030895	150031895	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22372.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	11.44	8.29	17.57	18.89	14.46	4.02	30.63	18.57	13.12
Merged-chr19-12435901-1	chr19	12435401	12436401	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	7996.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	389.57	360.79	209.04	407.53	313.96	248.37	363.33	369.65	179.24
Merged-chr6-8288974-1	chr6	8288474	8289474	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	29686.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	9.72	15.67	8.32	13.49	15.39	16.08	13.73	11.94	7.49
Merged-chr17-86788505-1	chr17	86788005	86789005	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	34641.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	10.3	4.15	4.62	4.72	2.8	8.84	1.06	1.33	8.74
Merged-chr9-83807773-1	chr9	83807273	83808273	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1468.0	NM_148941	83603.0	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	2.86	5.07	7.4	2.7	3.27	0.0	5.28	4.86	2.5
Merged-chr9-90239315-1	chr9	90238815	90239815	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 3 of 12)	intron (NM_194334, intron 3 of 12)	31454.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	72.65	64.51	99.89	68.82	49.45	81.18	91.89	71.19	78.07
Merged-chr2-18687947-2	chr2	18687459	18688459	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10941.0	NM_007552	12151.0	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	13.16	6.45	0.92	2.7	3.27	4.02	6.34	5.31	6.25
Merged-chr6-135195069-1	chr6	135194569	135195569	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040296)	TTS (NR_040296)	-2918.0	NM_001362110	74525.0	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|mKIAA1467	family with sequence similarity 234, member B	protein-coding	1.14	0.46	1.85	1.35	3.73	0.0	26.4	8.84	13.74
Merged-chr19-11092295-2	chr19	11091821	11092821	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-11218.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	31.46	37.32	22.2	39.13	15.86	30.54	31.69	12.82	21.86
Merged-chr6-115996515-2	chr6	115996002	115997002	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1497.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	41.19	32.25	39.77	32.39	20.06	24.11	20.07	27.86	16.24
Merged-chr9-37101837-2	chr9	37101329	37102329	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	intron (NM_001029838, intron 1 of 12)	45493.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.0	0.92	0.0	2.7	4.2	1.61	4.22	3.54	1.25
Merged-chr14-25301824-1	chr14	25301324	25302324	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-157361.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	4.0	0.92	0.0	7.42	7.46	9.65	1.06	4.86	6.25
Merged-chr16-17718034-2	chr16	17717527	17718527	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285886, intron 1 of 16)	intron (NM_001285886, intron 1 of 16)	4873.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	14.3	13.36	14.8	8.1	9.8	20.9	28.52	9.73	18.74
Merged-chr13-43118965-1	chr13	43118465	43119465	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005740, intron 8 of 12)	intron (NM_001005740, intron 8 of 12)	-3874.0	NM_001005748	218194.0	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	6.86	4.15	4.62	4.72	0.93	3.22	1.06	2.21	1.25
Merged-chr1-87007939-1	chr1	87007439	87008439	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	81989.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	14.87	17.97	6.47	13.49	13.06	22.51	19.01	21.67	8.12
Merged-chr12-24697251-2	chr12	24696746	24697746	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11008.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	1.14	1.38	1.85	0.67	1.87	0.0	0.0	1.33	2.5
Merged-chr11-76456388-2	chr11	76455898	76456898	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346670, intron 10 of 21)	intron (NM_001346670, intron 10 of 21)	12067.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	9.72	6.91	6.47	7.42	2.33	4.82	7.39	3.54	9.99
Merged-chr4-62729344-1	chr4	62728844	62729844	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	55370.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.43	3.23	1.85	3.37	4.2	8.04	9.51	3.1	3.12
Merged-chr6-97972029-1	chr6	97971529	97972529	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001178049, intron 2 of 9)	B4A|SINE|B4	-19754.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	19.45	17.97	15.72	13.49	16.79	5.63	15.84	16.8	13.12
Merged-chr9-13664745-1	chr9	13664245	13665245	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	2285.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	4.58	7.37	5.55	11.47	4.67	5.63	8.45	3.98	7.49
Merged-chr11-78360239-1	chr11	78359739	78360739	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13529.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	13.73	5.99	14.8	24.29	19.59	21.7	20.07	17.24	13.74
Merged-chr2-150919512-1	chr2	150919012	150920012	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027014, intron 4 of 6)	L1Md_F2|LINE|L1	9918.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	9.72	13.82	13.87	9.45	7.0	13.66	10.56	14.59	11.24
Merged-chr7-15930102-2	chr7	15929588	15930588	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7717.0	NM_009156	20364.0	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.0	7.83	1.85	5.4	1.87	0.0	5.28	0.88	2.5
Merged-chrX-101640922-1	chrX	101640422	101641422	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 1 of 21)	intron (NM_001290535, intron 1 of 21)	704.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	46.34	88.47	51.8	66.8	72.78	57.87	97.17	126.02	49.96
Merged-chr12-84148409-1	chr12	84147909	84148909	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027438)	promoter-TSS (NM_027438)	80.0	NM_027438	70481.0	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	6.86	0.46	0.0	5.4	4.67	1.61	5.28	1.77	1.25
Merged-chr10-127540518-1	chr10	127540018	127541018	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 83 of 88)	intron (NM_008512, intron 83 of 88)	-5959.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	1.72	0.92	7.4	4.72	0.93	4.02	4.22	0.88	0.0
Merged-chr6-56653275-3	chr6	56652782	56653782	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51417.0	NM_025520	66373.0	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.86	8.29	12.02	9.45	9.8	2.41	7.39	7.07	6.25
Merged-chr7-24901320-1	chr7	24900820	24901820	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007655, intron 4 of 4)	intron (NM_007655, intron 4 of 4)	-1666.0	NM_001130150	16801.0	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	8.01	11.52	11.1	10.8	6.53	25.72	11.62	7.07	17.49
Merged-chr10-20763438-1	chr10	20762938	20763938	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38360.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.86	3.23	5.55	8.77	5.6	3.22	3.17	6.63	2.5
Merged-chr1-39368874-1	chr1	39368374	39369374	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252219, intron 2 of 4)	intron (NM_001252219, intron 2 of 4)	1023.0	NM_001252218	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	66.36	94.0	106.37	93.11	70.91	69.13	102.45	81.8	52.46
Merged-chr5-67958645-1	chr5	67958145	67959145	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256184, intron 2 of 3)	(CAAAA)n|Simple_repeat|Simple_repeat	-15564.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	1.14	4.15	7.4	20.92	24.72	29.74	1.06	4.42	5.0
Merged-chr10-42962359-1	chr10	42961859	42962859	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28803.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	9.72	8.75	11.1	10.12	18.66	10.45	13.73	11.05	9.99
Merged-chr13-20182411-2	chr13	20181915	20182915	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	91908.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	17.73	12.44	17.57	31.04	11.66	20.09	16.9	25.2	23.73
Merged-chr9-88959104-1	chr9	88958604	88959604	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009742, intron 1 of 1)	intron (NM_009742, intron 1 of 1)	2184.0	NM_009742	12044.0	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	25.74	39.17	25.9	9.45	9.33	8.04	16.9	11.94	11.24
Merged-chr4-102955734-2	chr4	102955255	102956255	+	707.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285859, intron 17 of 23)	intron (NM_001285859, intron 17 of 23)	-30624.0	NM_001163767	67344.0	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	5.72	1.84	0.0	9.45	7.46	4.82	5.28	2.65	3.75
Merged-chr8-119123075-1	chr8	119122575	119123575	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	GA-rich|Low_complexity|Low_complexity	-221463.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	4.0	0.92	4.62	6.07	5.13	12.06	7.39	3.54	11.24
Merged-chr3-96489711-1	chr3	96489211	96490211	+	707.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPEz-int|LTR|ERVK	-35474.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.0	0.0	0.0	0.67	0.0	0.0	116.18	151.22	78.07
Merged-chr8-56324375-1	chr8	56323875	56324875	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29823.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	10.3	20.74	15.72	18.22	18.66	21.7	12.67	13.71	9.37
Merged-chr16-38713299-1	chr16	38712799	38713799	+	707.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020260)	promoter-TSS (NM_020260)	-264.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	25.17	16.13	25.9	36.43	13.53	28.94	134.14	120.71	96.18
Merged-chr15-8625581-2	chr15	8625081	8626081	+	706.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85226.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.43	2.76	13.87	0.0	4.67	1.61	2.11	4.86	3.12
Merged-chr16-93055750-3	chr16	93055248	93056248	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-229674.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.58	3.69	0.0	6.07	1.87	0.8	5.28	6.63	5.0
Merged-chr8-66862561-3	chr8	66862079	66863079	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163564, intron 1 of 7)	intron (NM_001163564, intron 1 of 7)	2362.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	10.87	19.35	19.42	17.54	14.0	12.86	10.56	5.31	7.49
Merged-chr17-32506403-3	chr17	32505852	32506852	+	706.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001101445)	promoter-TSS (NM_001101445)	-110.0	NM_001101445	208285.0	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	16.59	14.28	14.8	24.96	23.79	19.29	17.96	20.78	5.0
Merged-chr10-81082344-3	chr10	81081834	81082834	+	706.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_022653)	TTS (NM_022653)	12251.0	NM_022653	50492.0	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	4.0	4.15	1.85	4.05	3.73	4.02	3.17	5.75	8.74
Merged-chr6-129097625-2	chr6	129097135	129098135	+	706.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	3268.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	50.91	60.82	24.05	33.74	51.32	41.8	36.97	45.1	13.74
Merged-chr4-130838109-2	chr4	130837617	130838617	+	706.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45580.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	16.02	9.68	11.1	12.82	11.66	21.7	7.39	3.54	4.37
Merged-chr6-134607492-2	chr6	134606978	134607978	+	706.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25010.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	5.15	1.38	3.7	7.42	5.6	4.02	4.22	0.88	6.25
Merged-chr17-45581568-4	chr17	45580996	45581996	+	706.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8235.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	22.31	15.67	12.95	24.29	13.53	12.06	17.96	5.31	1.25
Merged-chr12-111759897-2	chr12	111759395	111760395	+	706.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361610, intron 1 of 14)	intron (NM_001361610, intron 1 of 14)	1027.0	NM_001025361	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	38.9	21.2	18.5	35.09	34.52	40.19	36.97	31.39	19.36
Merged-chr7-122199464-2	chr7	122198954	122199954	+	706.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13223.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	9.15	5.07	1.85	7.42	6.53	4.82	6.34	4.86	2.5
Merged-chr3-105948533-2	chr3	105948019	105949019	+	706.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304719, intron 8 of 9)	L2|LINE|L2	-10979.0	NM_027432	70465.0	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	17.73	21.66	24.05	25.64	12.13	23.31	31.69	30.51	9.99
Merged-chr3-61389644-1	chr3	61389144	61390144	+	706.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25137.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	3.43	0.92	0.0	8.77	11.2	6.43	5.28	7.07	9.37
Merged-chr18-75369217-3	chr18	75368729	75369729	+	706.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001042660, exon 1 of 4)	exon (NM_001042660, exon 1 of 4)	1864.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	44.05	32.72	49.02	43.18	31.72	33.76	80.27	43.77	51.21
Merged-chr1-33982212-1	chr1	33981712	33982712	+	706.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-29613.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	25.74	24.42	22.2	20.92	10.26	28.13	7.39	12.82	4.37
Merged-chr17-27754277-2	chr17	27753780	27754780	+	706.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-23277.0	NM_001357728	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	8.01	6.91	14.8	10.12	6.53	16.88	6.34	2.21	5.0
Merged-chr1-92774978-2	chr1	92774487	92775487	+	706.791626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56658.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	13.16	14.75	5.55	20.92	22.39	22.51	12.67	7.96	3.12
Merged-chr7-110613825-3	chr7	110613315	110614315	+	706.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177324, intron 1 of 40)	intron (NM_177324, intron 1 of 40)	1105.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	109.83	99.53	80.47	118.08	90.97	113.33	106.67	133.53	72.45
Merged-chr6-140715179-3	chr6	140714666	140715666	+	706.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88281.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	9.15	2.3	3.7	0.67	1.87	4.02	4.22	2.21	7.49
Merged-chr17-25732278-3	chr17	25731776	25732776	+	706.772217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357176)	TTS (NM_001357176)	-3764.0	NM_177822	328783.0	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	2.29	2.76	3.7	7.42	2.8	1.61	4.22	1.33	1.25
Merged-chr6-120915050-2	chr6	120914553	120915553	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	1771.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.86	6.45	3.7	11.47	5.13	4.02	5.28	5.75	7.49
Merged-chr11-97793348-2	chr11	97792854	97793854	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6211.0	NM_010688	16796.0	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	8.01	0.0	3.7	8.1	2.33	3.22	4.22	3.54	0.0
Merged-chr11-120989833-2	chr11	120989295	120990295	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027874, intron 1 of 9)	intron (NM_027874, intron 1 of 9)	1538.0	NM_139059	104318.0	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	62.35	56.68	48.1	47.9	33.59	30.54	71.82	60.13	31.85
Merged-chr11-117385026-2	chr11	117384520	117385520	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29369.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	5.15	3.23	5.55	7.42	1.4	3.22	1.06	3.54	1.25
Merged-chr11-118740137-2	chr11	118739633	118740633	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	20908.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	4.58	9.68	1.85	5.4	9.8	3.22	5.28	3.54	9.99
Merged-chr19-60947732-2	chr19	60947237	60948237	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	ORR1B2|LTR|ERVL-MaLR	57988.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	50.91	64.05	53.65	49.25	35.45	71.54	32.74	44.66	64.95
Merged-chr11-114987513-1	chr11	114987013	114988013	+	706.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145437, exon 2 of 4)	exon (NM_145437, exon 2 of 4)	2373.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	8.58	1.84	3.7	71.52	42.92	74.75	65.48	71.19	44.34
Merged-chr9-109932818-2	chr9	109932333	109933333	+	706.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205332, intron 1 of 17)	intron (NM_001205332, intron 1 of 17)	1059.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	20.02	15.67	13.87	15.52	11.66	11.25	17.96	9.29	16.86
Merged-chr9-104410445-2	chr9	104409986	104410986	+	706.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15627.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.15	8.75	11.1	4.72	1.4	0.8	5.28	2.65	0.62
Merged-chr11-84290934-2	chr11	84290426	84291426	+	706.6875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133360, intron 28 of 53)	intron (NM_133360, intron 28 of 53)	95488.0	NM_133360	107476.0	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	62.35	74.19	56.42	97.83	106.83	71.54	128.85	145.03	84.31
Merged-chr2-84784034-1	chr2	84783534	84784534	+	706.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2C1|LTR|ERVL	-8605.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	10.3	8.29	7.4	4.72	6.06	0.0	7.39	9.29	1.25
Merged-chr11-72866713-3	chr11	72866235	72867235	+	706.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045536, exon 24 of 55)	exon (NM_001045536, exon 24 of 55)	70509.0	NM_001045536	195018.0	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	11.44	5.99	18.5	12.14	14.93	9.65	15.84	7.07	5.0
Merged-chr3-55787618-1	chr3	55787118	55788118	+	706.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 40 of 57)	CpG	5108.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	2.86	0.46	1.85	2.7	3.27	4.82	2.11	4.42	7.49
Merged-chr4-126181342-2	chr4	126180837	126181837	+	706.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 3 of 11)	intron (NM_001356455, intron 3 of 11)	-17996.0	NM_001162533	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	22.88	13.82	14.8	16.87	5.13	8.04	6.34	16.36	9.99
Merged-chr17-86237571-2	chr17	86237079	86238079	+	706.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	49599.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	7.44	5.07	1.85	6.07	3.73	0.0	6.34	2.65	2.5
Merged-chr11-48790423-3	chr11	48789884	48790884	+	706.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9976.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	15.45	11.06	31.45	20.24	14.46	12.06	16.9	11.94	13.74
Merged-chr2-104460218-3	chr2	104459728	104460728	+	706.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 2 of 15)	MIRb|SINE|MIR	-31288.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	4.58	5.99	11.1	6.75	7.46	4.82	8.45	5.75	8.12
Merged-chr7-111024400-3	chr7	111023888	111024888	+	706.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4563.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	2.86	8.29	3.7	6.07	10.73	12.86	11.62	5.75	2.5
Merged-chr2-57103235-1	chr2	57102735	57103735	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11803.0	NM_013613	18227.0	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	1.14	1.84	0.0	4.05	2.33	0.0	3.17	1.77	1.25
Merged-chr17-5295945-2	chr17	5295449	5296449	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 8 of 19)	intron (NM_001085355, intron 8 of 19)	122818.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	6.29	11.06	9.25	15.52	14.46	1.61	11.62	7.07	2.5
Merged-chr5-125313478-1	chr5	125312978	125313978	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	MTEb|LTR|ERVL-MaLR	27616.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	25.17	23.96	45.32	28.34	22.39	36.97	25.35	23.88	28.1
Merged-chr4-149586888-2	chr4	149586451	149587451	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023051, intron 1 of 18)	CpG	483.0	NM_023051	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	13.16	3.23	0.92	12.82	2.8	6.43	7.39	2.21	3.12
Merged-chrX-11997472-3	chrX	11996954	11997954	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	83099.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	2.86	2.76	4.62	0.0	1.87	0.0	3.17	2.65	3.75
Merged-chr1-74134083-2	chr1	74133590	74134590	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034060, intron 8 of 11)	intron (NM_001034060, intron 8 of 11)	8549.0	NM_001034060	435626.0	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	4.0	0.46	0.0	4.05	1.87	5.63	2.11	3.98	5.0
Merged-chr13-107692406-1	chr13	107691906	107692906	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_045900)	TTS (NR_045900)	5009.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	6.29	8.75	9.25	4.05	2.8	2.41	2.11	3.54	5.0
Merged-chr17-35420607-3	chr17	35420100	35421100	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4247.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	13.73	7.83	3.7	13.49	9.33	8.84	0.0	1.77	6.25
Merged-chr3-16004524-1	chr3	16004024	16005024	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	RLTR23|LTR|ERV1	1808.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	38.33	48.38	25.9	34.41	42.45	41.8	30.63	38.47	14.99
Merged-chr10-67051053-1	chr10	67050553	67051553	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	45935.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	14.87	13.36	10.17	12.14	5.13	16.08	12.67	9.73	8.74
Merged-chr16-4674253-1	chr16	4673753	4674753	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 3 of 27)	intron (NM_030205, intron 3 of 27)	5467.0	NM_030205	78885.0	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	4.0	3.69	7.4	5.4	7.46	5.63	7.39	5.75	9.37
Merged-chr10-81287896-1	chr10	81287396	81288396	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	-2115.0	NM_001282096	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	2.86	1.38	5.55	4.72	0.93	0.0	4.22	1.33	3.75
Merged-chr15-96776872-2	chr15	96776366	96777366	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77138.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.58	5.99	0.92	6.07	5.13	8.04	6.34	9.29	1.25
Merged-chr13-91464754-2	chr13	91464266	91465266	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	3669.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	9.72	13.36	7.4	11.47	4.2	12.06	2.11	8.4	1.25
Merged-chr5-96791983-2	chr5	96791445	96792445	+	706.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TGG)n|Simple_repeat|Simple_repeat	-1440.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	14.3	11.52	22.2	10.12	8.86	16.08	17.96	14.59	17.49
Merged-chr4-59340881-2	chr4	59340381	59341381	+	706.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 12 of 16)	intron (NM_001163288, intron 12 of 16)	80830.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	25.74	13.36	13.87	21.59	18.19	7.23	4.22	4.86	2.5
Merged-chr14-105483311-4	chr14	105482805	105483805	+	706.487488	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15483.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	10.87	11.52	9.25	4.72	5.6	6.43	11.62	11.5	11.24
Merged-chr19-31972203-3	chr19	31971699	31972699	+	706.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103438.0	NM_001081074	69865.0	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	1.14	4.15	1.85	4.05	6.06	4.82	3.17	2.21	3.75
Merged-chr2-73554597-3	chr2	73554098	73555098	+	706.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-25111.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	48.05	47.46	40.7	60.05	40.59	57.87	50.7	52.62	53.08
Merged-chr19-37548171-2	chr19	37547674	37548674	+	706.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2244.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	57.21	64.97	59.2	46.56	37.79	46.62	64.43	45.1	42.47
Merged-chr17-45663467-3	chr17	45662943	45663943	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198167, intron 19 of 23)	intron (NM_198167, intron 19 of 23)	-4134.0	NM_001013767	268958.0	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	1.72	1.84	1.85	4.05	0.93	8.04	3.17	0.0	9.37
Merged-chr7-102258296-3	chr7	102257849	102258849	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8231.0	NM_019566	56212.0	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	3.43	3.69	0.0	4.72	3.73	1.61	6.34	1.77	1.25
Merged-chr5-112973802-3	chr5	112973304	112974304	+	706.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 2 of 20)	intron (NM_001285806, intron 2 of 20)	41734.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	19.45	15.67	22.2	29.69	14.93	23.31	22.18	10.61	4.37
Merged-chr9-89198503-3	chr9	89198004	89199004	+	706.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007534)	promoter-TSS (NM_007534)	-769.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	82.38	98.61	42.55	89.06	62.51	37.78	96.11	101.26	19.36
Merged-chr2-68983724-2	chr2	68983218	68984218	+	706.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	ID_B1|SINE|B4	122277.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	8.58	16.59	20.35	12.14	20.53	13.66	10.56	10.17	7.49
Merged-chr8-24431474-2	chr8	24430984	24431984	+	706.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7462.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	12.59	4.61	3.7	14.84	8.86	5.63	8.45	6.63	13.74
Merged-chr17-13052372-2	chr17	13051861	13052861	+	706.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013832)	promoter-TSS (NM_001013832)	-81.0	NM_001013832	436440.0	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	8.58	4.15	7.4	2.7	7.93	9.65	0.0	0.0	5.0
Merged-chr10-88228803-2	chr10	88228304	88229304	+	706.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026070, intron 5 of 6)	intron (NM_026070, intron 5 of 6)	27707.0	NM_027487	67282.0	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	8.01	17.97	9.25	17.54	10.73	18.49	15.84	6.19	16.86
Merged-chr7-28014151-2	chr7	28013627	28014627	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001254951)	promoter-TSS (NM_001254951)	-12.0	NM_001254951	100043772.0	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	22.31	19.35	22.2	14.84	17.73	13.66	22.18	20.78	9.99
Merged-chr1-51918019-1	chr1	51917519	51918519	+	706.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2041.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.14	0.92	1.85	4.72	6.53	3.22	2.11	0.0	3.75
Merged-chr3-27227619-1	chr3	27227119	27228119	+	706.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 3 of 4)	B4A|SINE|B4	44615.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	16.02	14.28	15.72	73.54	48.52	61.89	69.71	89.76	38.72
Merged-chr17-59013298-3	chr17	59012793	59013793	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026497)	promoter-TSS (NM_026497)	29.0	NM_026497	67993.0	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	11.44	9.68	3.7	11.47	14.93	12.06	13.73	14.59	12.49
Merged-chr2-52377936-1	chr2	52377436	52378436	+	706.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAAA)n|Simple_repeat|Simple_repeat	-39138.0	NM_010889	17996.0	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	28.6	22.58	15.72	31.04	27.06	20.9	63.37	53.94	15.61
Merged-chr13-20184876-3	chr13	20184400	20185400	+	706.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	94393.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	66.36	96.3	63.82	76.24	73.24	96.45	71.82	84.45	70.57
Merged-chr1-150167351-3	chr1	150166874	150167874	+	706.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-2426.0	NR_110420	102639566.0	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	2.86	2.3	1.85	6.75	5.6	6.43	5.28	2.65	0.0
Merged-chr10-127103872-3	chr10	127103364	127104364	+	706.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	17296.0	NM_177614	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	12.01	8.75	9.25	10.8	7.93	12.86	5.28	9.29	7.49
Merged-chr5-139789678-2	chr5	139789188	139790188	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1848.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	5.72	4.61	3.7	6.07	3.73	8.04	6.34	1.33	5.0
Merged-chr8-71366857-2	chr8	71366345	71367345	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145780)	promoter-TSS (NM_001145780)	-3.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	233.4	228.09	167.42	194.99	182.4	191.3	204.9	255.57	119.91
Merged-chr5-28065694-2	chr5	28065189	28066189	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5723.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	5.72	4.61	1.85	12.82	5.13	8.84	9.51	1.77	3.12
Merged-chr19-11740345-2	chr19	11739854	11740854	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7205.0	NM_008118	14603.0	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	16.02	14.28	8.32	10.12	10.73	14.47	11.62	9.73	11.24
Merged-chr18-80204733-2	chr18	80204242	80205242	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-2056.0	NM_001038608	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	8.01	5.99	2.77	4.05	4.2	10.45	14.79	8.4	15.61
Merged-chr11-97771616-2	chr11	97771116	97772116	+	706.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028156, exon 3 of 3)	exon (NM_028156, exon 3 of 3)	4302.0	NM_028156	72215.0	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	12.59	7.83	5.55	4.72	6.53	4.82	10.56	5.31	8.74
Merged-chr2-75639766-1	chr2	75639266	75640266	+	706.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	-19493.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.57	0.92	0.0	0.0	0.47	0.0	49.64	53.5	32.48
Merged-chr10-14216745-2	chr10	14216249	14217249	+	706.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	250370.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	2.29	5.07	5.55	4.72	4.2	3.22	3.17	1.33	9.99
Merged-chr8-82351497-3	chr8	82351002	82352002	+	706.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	B3A|SINE|B2	51084.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	24.03	33.18	23.12	16.19	12.13	14.47	11.62	12.38	13.12
Merged-chr16-17409230-3	chr16	17408712	17409712	+	706.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023348, intron 1 of 4)	intron (NM_023348, intron 1 of 4)	-2898.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	73.79	105.06	70.3	89.74	75.11	92.44	66.54	57.92	43.72
Merged-chr17-6986276-1	chr17	6985776	6986776	+	706.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026611, intron 4 of 8).2	intron (NM_026611, intron 4 of 8).2	7416.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	1.14	0.46	0.0	4.05	3.73	0.0	2.11	0.0	1.25
Merged-chr6-51510239-3	chr6	51509735	51510735	+	706.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13668.0	NM_001361582	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	13.73	10.14	1.85	3.37	2.33	9.65	15.84	12.38	5.0
Merged-chr10-77626937-3	chr10	77626417	77627417	+	706.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019803, intron 1 of 5)	intron (NM_019803, intron 1 of 5)	4596.0	NM_019803	22213.0	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	21.17	19.81	31.45	25.64	12.13	21.7	38.02	28.74	26.23
Merged-chr7-106557201-2	chr7	106556702	106557702	+	706.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	87443.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	7.44	5.53	7.4	4.05	14.46	10.45	4.22	2.65	1.87
Merged-chr2-58797089-3	chr2	58796593	58797593	+	706.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41909.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	8.01	8.75	6.47	16.19	3.73	4.82	11.62	6.63	9.37
Merged-chr2-35433637-3	chr2	35433142	35434142	+	706.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	27807.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	35.47	37.32	44.4	28.34	32.66	42.6	25.35	13.27	16.24
Merged-chr13-92526121-2	chr13	92525618	92526618	+	706.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173392, intron 1 of 17)	intron (NM_173392, intron 1 of 17)	4692.0	NM_173392	218441.0	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	14.87	12.9	10.17	29.69	33.59	24.11	44.36	48.2	28.1
Merged-chr15-60824293-2	chr15	60823796	60824796	+	706.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030696, exon 1 of 3)	non-coding (NR_030696, exon 1 of 3)	784.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	46.91	57.6	34.22	70.17	67.18	47.42	33.8	42.89	18.11
Merged-chrX-48427830-3	chrX	48427326	48428326	+	706.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	35306.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	28.6	44.7	43.47	26.99	19.59	33.76	28.52	46.43	28.73
Merged-chr15-36323889-3	chr15	36323377	36324377	+	706.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40730.0	NM_001357631	30945.0	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	3.43	1.84	9.25	10.8	1.87	7.23	6.34	3.1	7.49
Merged-chr1-191173954-1	chr1	191173454	191174454	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	-9137.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	10.87	2.76	1.85	6.75	3.27	3.22	2.11	0.44	3.12
Merged-chr7-67217362-2	chr7	67216871	67217871	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131044, intron 2 of 2)	intron (NR_131044, intron 2 of 2)	5087.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	2.86	0.92	1.85	5.4	2.33	1.61	1.06	3.54	1.25
Merged-chr6-34035504-1	chr6	34035004	34036004	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028886, intron 1 of 19)	intron (NM_028886, intron 1 of 19)	6056.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.58	1.84	1.85	2.02	1.87	9.65	3.17	3.1	8.12
Merged-chr2-72373068-1	chr2	72372568	72373568	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023057, intron 7 of 19)	intron (NM_023057, intron 7 of 19)	87367.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	21.74	19.81	27.75	8.77	0.93	1.61	33.8	27.41	12.49
Merged-chr8-86884723-2	chr8	86884229	86885229	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	CpG	529.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	166.47	156.67	166.49	157.88	91.9	119.76	123.57	73.84	89.93
Merged-chr9-57517307-2	chr9	57516810	57517810	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3922.0	NM_007747	12858.0	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	3.43	5.53	8.32	11.47	1.4	1.61	7.39	3.1	2.5
Merged-chr14-63124909-1	chr14	63124409	63125409	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	2447.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	159.03	271.86	121.17	254.37	272.91	190.5	318.97	310.4	139.27
Merged-chr7-100944055-1	chr7	100943555	100944555	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183168, intron 1 of 2)	intron (NM_183168, intron 1 of 2)	-11894.0	NM_001081116	207212.0	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	130.43	110.13	82.32	102.56	88.64	77.16	80.27	106.12	49.96
Merged-chr4-155220025-1	chr4	155219525	155220525	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	2510.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	21.17	16.13	9.25	34.41	27.06	27.33	29.57	26.09	13.74
Merged-chr6-4808823-3	chr6	4808343	4809343	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER89-int|LTR|ERV1	61537.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	9.72	6.45	2.77	10.8	7.46	3.22	4.22	3.1	3.75
Merged-chr9-100439566-1	chr9	100439066	100440066	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46907.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	20.02	24.42	35.15	22.27	21.93	31.35	25.35	10.61	7.49
Merged-chr7-100460900-2	chr7	100460390	100461390	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017985, intron 32 of 32)	ORR1E|LTR|ERVL-MaLR	-12101.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	108.12	85.25	139.67	137.64	119.43	114.94	76.05	73.84	69.32
Merged-chr7-56013674-1	chr7	56013174	56014174	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153578, intron 1 of 4)	L1MB3|LINE|L1	5899.0	NM_153578	233280.0	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	10.87	12.44	11.1	12.14	10.26	17.68	0.0	0.44	1.87
Merged-chr6-119388224-1	chr6	119387724	119388724	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	CpG	510.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	163.61	118.42	94.35	137.64	91.9	57.07	113.01	91.97	64.33
Merged-chr4-102104700-1	chr4	102104200	102105200	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117860.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	5.72	1.38	3.7	2.7	3.73	4.82	17.96	14.59	4.37
Merged-chr10-127542586-1	chr10	127542086	127543086	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008512, exon 78 of 89)	exon (NM_008512, exon 78 of 89)	-8027.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	7.44	0.92	9.25	2.02	2.33	4.82	4.22	2.65	3.75
Merged-chr2-150826295-1	chr2	150825795	150826795	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153781, intron 15 of 19)	intron (NM_153781, intron 15 of 19)	16275.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	6.86	8.75	24.05	15.52	7.46	28.13	9.51	3.98	5.62
Merged-chr14-70889177-2	chr14	70888675	70889675	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008115)	promoter-TSS (NM_008115)	-932.0	NM_001302095	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	21.74	13.36	25.9	19.57	24.26	30.54	14.79	6.19	9.99
Merged-chr2-166009707-1	chr2	166009207	166010207	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	ID_B1|SINE|B4	17070.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	18.31	27.19	33.3	26.31	28.92	39.39	31.69	17.24	19.98
Merged-chr10-111544844-1	chr10	111544344	111545344	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	38558.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	6.29	9.22	9.25	12.82	6.06	4.82	12.67	9.29	5.0
Merged-chr5-74960531-1	chr5	74960031	74961031	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	11337.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.57	6.45	7.4	5.4	0.47	2.41	4.22	3.1	5.0
Merged-chr13-89539706-1	chr13	89539206	89540206	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013500)	promoter-TSS (NM_013500)	-930.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	5.15	2.76	5.55	0.67	2.33	1.61	1.06	4.42	6.25
Merged-chr6-54954481-1	chr6	54953981	54954981	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	intron (NM_172729, intron 1 of 11)	17180.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	20.59	15.21	15.72	12.14	9.8	18.49	92.94	113.19	112.42
Merged-chr4-95046614-1	chr4	95046114	95047114	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5608.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	9.72	2.76	0.0	2.7	2.8	3.22	3.17	0.88	5.62
Merged-chr16-29734482-1	chr16	29733982	29734982	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155148.0	NM_001199177	74143.0	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	4.0	3.69	0.92	2.7	3.27	0.0	2.11	0.88	4.37
Merged-chr17-73034199-1	chr17	73033699	73034699	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73786.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	69.79	52.07	38.85	85.69	51.32	52.25	50.7	35.37	39.35
Merged-chr11-6411885-3	chr11	6411385	6412385	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3985.0	NM_008907	268373.0	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	2.29	5.53	11.1	6.75	0.93	3.22	2.11	3.1	2.5
Merged-chr12-59052629-1	chr12	59052129	59053129	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	8843.0	NM_001306218	78232.0	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	8.01	5.99	13.87	7.42	5.13	18.49	11.62	10.61	6.87
Merged-chr10-26576381-1	chr10	26575881	26576881	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98270.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.14	2.76	3.7	2.7	4.67	0.8	5.28	3.1	5.62
Merged-chr17-35434916-1	chr17	35434416	35435416	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4239.0	NM_010394	15018.0	Mm.431282	NM_010394	ENSMUSG00000060550	H2-Q7	H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7	histocompatibility 2, Q region locus 7	protein-coding	5.15	3.69	0.0	1.35	2.8	0.0	5.28	0.88	3.75
Merged-chr10-111994734-1	chr10	111994234	111995234	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028608, intron 1 of 5)	URR1B|DNA|hAT-Charlie	2530.0	NM_028608	73690.0	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	54.92	44.7	28.67	87.71	68.11	58.68	35.91	46.43	35.6
Merged-chr8-108956693-1	chr8	108956193	108957193	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007496, exon 10 of 10)	exon (NM_007496, exon 10 of 10)	19833.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	3.43	1.38	0.0	1.35	1.87	0.8	2.11	3.54	3.75
Merged-chr14-20828383-1	chr14	20827883	20828883	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-8279.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	120.7	125.33	122.09	93.11	71.84	76.36	148.92	146.36	118.04
Merged-chr13-63038045-1	chr13	63037545	63038545	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 3 of 15)	intron (NM_001289926, intron 3 of 15)	73152.0	NM_001289924	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.58	6.45	4.62	7.42	7.46	8.04	2.11	7.07	4.37
Merged-chrX-73228671-2	chrX	73228169	73229169	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007978, exon 1 of 1)	exon (NM_007978, exon 1 of 1)	363.0	NM_007978	14070.0	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding	54.35	82.02	49.02	66.8	62.05	76.36	68.65	56.6	40.59
Merged-chr18-32485163-1	chr18	32484663	32485663	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74871.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	1.72	1.84	1.85	6.07	0.93	0.0	1.06	2.21	0.0
Merged-chr12-79797243-3	chr12	79796748	79797748	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 9 of 10)	intron (NM_009014, intron 9 of 10)	127485.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	9.72	5.53	5.55	8.1	4.67	12.06	6.34	5.31	7.49
Merged-chr9-56168140-1	chr9	56167640	56168640	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-7070.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	2.86	2.3	1.85	9.45	2.33	3.22	1.06	1.33	7.49
Merged-chr11-114954275-1	chr11	114953775	114954775	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERVK9E_I-int|LTR|ERVK	6142.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	6.29	12.44	13.87	7.42	3.27	11.25	16.9	13.27	18.74
Merged-chr11-100695119-1	chr11	100694619	100695619	+	706.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030150, exon 13 of 13)	3' UTR (NM_030150, exon 13 of 13)	9152.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	6.86	5.07	0.0	8.77	2.33	4.02	2.11	2.21	5.0
Merged-chr5-3928818-1	chr5	3928318	3929318	+	706.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194462, intron 1 of 47)	intron (NM_194462, intron 1 of 47)	632.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	69.79	36.86	40.7	70.17	35.45	24.92	57.03	41.56	18.74
Merged-chr5-17982972-1	chr5	17982472	17983472	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081143, intron 1 of 7)	intron (NM_001081143, intron 1 of 7)	20402.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	2.86	6.45	1.85	14.17	5.13	0.0	5.28	8.4	2.5
Merged-chr10-19938522-1	chr10	19938022	19939022	+	706.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	3996.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	47.48	53.91	47.17	45.88	35.92	46.62	17.96	18.57	31.85
Merged-chr9-108452739-3	chr9	108452203	108453203	+	705.988892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001359428)	promoter-TSS (NM_001359428)	98.0	NM_001359428	78267.0	Mm.283194	NM_030075	ENSMUSG00000032609	Klhdc8b	4931406O17Rik	kelch domain containing 8B	protein-coding	8.01	8.75	5.55	7.42	1.4	3.22	6.34	4.86	1.25
Merged-chr16-16526305-3	chr16	16525828	16526828	+	705.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	1083.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	295.75	352.04	171.12	315.09	300.43	225.86	261.93	275.03	148.01
Merged-chr8-26066640-3	chr8	26066147	26067147	+	705.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207659, intron 13 of 21)	intron (NM_207659, intron 13 of 21)	-15962.0	NR_110583	76604.0	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	10.3	9.22	5.55	6.07	6.53	8.84	25.35	15.48	18.74
Merged-chr7-127991982-3	chr7	127991494	127992494	+	705.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023258, exon 3 of 3)	3' UTR (NM_023258, exon 3 of 3)	1873.0	NM_023258	66824.0	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	12.59	19.35	27.75	8.77	6.06	22.51	13.73	9.73	14.36
Merged-chr11-25862972-2	chr11	25862478	25863478	+	705.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-339262.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	1.72	1.84	0.0	2.02	2.8	1.61	4.22	3.54	2.5
Merged-chr2-16359545-2	chr2	16359044	16360044	+	705.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	3240.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	5.72	7.37	0.0	4.05	9.33	6.43	3.17	4.42	5.0
Merged-chr17-31994808-2	chr17	31994310	31995310	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39698.0	NM_028902	74377.0	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	33.75	24.88	20.35	29.69	14.46	21.7	23.24	15.48	23.73
Merged-chrX-166661444-2	chrX	166660961	166661961	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046015)	promoter-TSS (NR_046015)	-564.0	NR_046015	382255.0	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	82.38	108.75	62.9	98.51	85.37	83.59	74.99	117.17	58.71
Merged-chrX-11718980-2	chrX	11718494	11719494	+	705.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	361559.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.01	3.23	1.85	2.7	1.87	5.63	3.17	0.44	2.5
Merged-chr15-34469888-2	chr15	34469368	34470368	+	705.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173421, intron 1 of 2)	intron (NM_173421, intron 1 of 2)	16556.0	NM_173421	239368.0	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.57	1.38	0.0	6.07	0.93	0.8	4.22	1.77	1.25
Merged-chr15-77832230-3	chr15	77831734	77832734	+	705.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 1 of 40)	intron (NM_022410, intron 1 of 40)	9941.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	23.45	19.81	24.05	19.57	20.53	26.53	16.9	14.15	12.49
Merged-chr9-99195270-2	chr9	99194743	99195743	+	705.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	41996.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	24.6	23.5	18.5	20.24	19.13	24.92	19.01	14.15	31.23
Merged-chr18-21122108-3	chr18	21121619	21122619	+	705.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49775.0	NM_008586	17288.0	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	5.15	2.3	0.0	5.4	2.33	1.61	2.11	3.98	1.25
Merged-chr3-75297651-2	chr3	75297165	75298165	+	705.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27587.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	64.07	91.24	56.42	82.32	64.84	42.6	69.71	97.72	50.59
Merged-chr1-36918138-2	chr1	36917635	36918635	+	705.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	21392.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	32.61	26.26	18.5	32.39	17.73	15.27	12.67	11.05	9.99
Merged-chr4-62667790-3	chr4	62667289	62668289	+	705.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	L2|LINE|L2	-6185.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	16.02	16.13	12.02	11.47	6.06	19.29	17.96	7.96	15.61
Merged-chr6-38761464-3	chr6	38760954	38761954	+	705.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	75857.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	18.88	10.6	18.5	13.49	16.79	20.9	17.96	4.42	16.24
Merged-chr4-46356952-3	chr4	46356435	46357435	+	705.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12741.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	7.44	2.76	1.85	2.7	4.67	2.41	4.22	0.44	2.5
Merged-chr13-14068231-3	chr13	14067747	14068747	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194262, intron 2 of 23)	T-rich|Low_complexity|Low_complexity	4463.0	NM_198122	94246.0	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	17.16	15.67	24.05	12.14	16.79	14.47	13.73	18.13	16.24
Merged-chr11-43653938-1	chr11	43653438	43654438	+	705.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-28060.0	NM_027557	70802.0	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	4.0	4.15	1.85	0.67	0.93	3.22	6.34	1.33	2.5
Merged-chr17-25014261-3	chr17	25013779	25014779	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020608, intron 1 of 20)	CpG	951.0	NM_020608	57354.0	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	cramped chromatin regulator homolog 1	protein-coding	50.91	50.69	30.52	48.58	40.12	49.83	48.58	35.82	24.98
Merged-chr2-137080673-1	chr2	137080173	137081173	+	705.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013822)	TTS (NM_013822)	35847.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.29	3.23	9.25	2.02	2.33	7.23	0.0	0.88	1.25
Merged-chr10-34118627-3	chr10	34118124	34119124	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9348.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	25.74	21.2	22.2	24.29	18.19	14.47	23.24	16.36	19.36
Merged-chr2-167660138-3	chr2	167659633	167660633	+	705.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145538, intron 1 of 5)	intron (NM_145538, intron 1 of 5)	1411.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	79.52	41.47	40.7	44.53	46.18	49.03	63.37	53.06	41.84
Merged-chr13-105216631-2	chr13	105216152	105217152	+	705.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	76362.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	8.01	5.53	10.17	14.84	7.93	6.43	12.67	3.1	8.74
Merged-chr11-88087116-2	chr11	88086614	88087614	+	705.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10944.0	NR_045499	70393.0	Mm.386799	NR_045499	ENSMUSG00000018378	2210416O15Rik	-	RIKEN cDNA 2210416O15 gene	ncRNA	5.15	3.23	1.85	4.05	1.4	4.02	2.11	3.54	1.87
Merged-chr1-134782896-2	chr1	134782414	134783414	+	705.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081307, intron 18 of 23)	intron (NM_001081307, intron 18 of 23)	20807.0	NR_015606	329251.0	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	20.59	13.82	25.9	4.72	1.87	1.61	5.28	4.42	12.49
Merged-chr11-4521108-2	chr11	4520601	4521601	+	705.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 4 of 17)	intron (NM_028860, intron 4 of 17)	73714.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	21.17	27.65	20.35	29.01	13.53	22.51	11.62	15.92	13.74
Merged-chr1-171221049-3	chr1	171220545	171221545	+	705.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305585)	promoter-TSS (NM_001305585)	-519.0	NM_001305585	11807.0	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	4.0	6.45	8.32	8.1	0.93	8.04	6.34	3.1	6.87
Merged-chr9-121248194-2	chr9	121247712	121248712	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177589, intron 16 of 36)	intron (NM_177589, intron 16 of 36)	28960.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	6.29	3.23	0.0	4.05	2.33	1.61	3.17	1.33	0.62
Merged-chr17-50994311-2	chr17	50993828	50994828	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	RLTR14-int|LTR|ERV1	165050.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	141.3	197.22	102.67	113.35	140.42	129.41	160.54	187.92	92.43
Merged-chr5-121900721-2	chr5	121900225	121901225	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 4 of 22)	intron (NM_007804, intron 4 of 22)	51728.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	6.29	4.61	1.85	10.12	6.53	9.65	2.11	3.1	2.5
Merged-chr3-104431857-1	chr3	104431357	104432357	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80061.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	5.15	8.75	9.25	12.14	12.6	12.86	7.39	1.33	5.0
Merged-chr18-64515277-1	chr18	64514777	64515777	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142950, intron 2 of 14)	intron (NM_001142950, intron 2 of 14)	1280.0	NM_027350	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	43.48	64.97	28.67	49.25	51.78	28.13	27.46	45.1	21.23
Merged-chr10-99133490-3	chr10	99133024	99134024	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153333, intron 4 of 12)	intron (NR_153333, intron 4 of 12)	25389.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	10.3	9.68	11.1	25.64	24.72	12.06	17.96	18.13	12.49
Merged-chr17-10444748-1	chr17	10444248	10445248	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	(TG)n|Simple_repeat|Simple_repeat	-11468.0	NR_077239	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	5.15	0.46	3.7	6.75	2.8	3.22	4.22	3.1	1.25
Merged-chr10-94054474-2	chr10	94053973	94054973	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	18472.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	5.15	11.52	1.85	10.12	11.2	7.23	23.24	10.61	5.0
Merged-chr4-136971182-2	chr4	136970688	136971688	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14372.0	NM_007939	13842.0	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	5.15	1.84	0.0	2.02	2.8	4.82	1.06	0.88	0.0
Merged-chr13-41263487-2	chr13	41262988	41263988	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135577, intron 1 of 1)	intron (NM_001135577, intron 1 of 1)	13644.0	NM_001135577	108934.0	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	44.62	41.47	48.1	45.21	36.39	67.52	50.7	35.82	43.09
Merged-chr16-91596498-2	chr16	91595985	91596985	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1195.0	NM_030018	77975.0	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	11.44	17.05	12.02	20.24	9.33	8.04	23.24	22.99	14.36
Merged-chr4-136907239-2	chr4	136906749	136907749	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8405.0	NM_007572	12259.0	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	1.14	2.76	4.62	4.72	0.93	6.43	1.06	0.44	1.25
Merged-chr17-36162551-2	chr17	36162037	36163037	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_033517)	TTS (NR_033517)	6000.0	NM_001081032	667977.0	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	1.14	0.0	0.0	7.42	2.33	0.0	4.22	1.77	3.12
Merged-chr12-79359027-1	chr12	79358527	79359527	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	61676.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	2.86	1.38	3.7	4.05	2.33	2.41	7.39	0.88	3.75
Merged-chr10-77976601-2	chr10	77976101	77977101	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2049.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	10.3	10.14	8.32	5.4	5.6	9.65	9.51	10.17	7.49
Merged-chr1-97630252-2	chr1	97629761	97630761	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	6.86	17.05	5.55	36.43	26.12	4.02	30.63	24.32	7.49
Merged-chr12-21318346-2	chr12	21317847	21318847	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026347, intron 3 of 5)	intron (NM_026347, intron 3 of 5)	1955.0	NM_026347	67732.0	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	7.44	5.53	3.7	1.35	2.8	6.43	2.11	0.88	9.99
Merged-chr15-41751598-3	chr15	41751054	41752054	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-37441.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	14.87	13.82	22.2	18.22	19.59	28.94	6.34	6.19	18.11
Merged-chr11-95337491-2	chr11	95336959	95337959	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	CpG	441.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	16.02	11.52	23.12	33.74	31.72	44.21	29.57	22.99	27.48
Merged-chr12-117479961-3	chr12	117479480	117480480	+	705.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36499.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	63.5	64.51	24.05	60.05	49.45	57.87	87.66	65.88	52.46
Merged-chr12-77000277-1	chr12	76999777	77000777	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38029.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	1.72	1.38	0.92	2.02	2.8	1.61	4.22	6.19	0.0
Merged-chr13-30744682-1	chr13	30744182	30745182	+	705.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4551.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	3.43	6.45	7.4	10.12	5.6	3.22	8.45	3.1	8.74
Merged-chr15-73350514-3	chr15	73350027	73351027	+	705.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	72664.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	10.3	10.6	3.7	3.37	7.46	8.04	11.62	8.84	5.62
Merged-chr17-29024575-3	chr17	29024097	29025097	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8063.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	11.44	3.69	1.85	4.72	5.13	13.66	7.39	2.21	7.49
Merged-chr16-13197486-3	chr16	13197012	13198012	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58969.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	4.0	2.76	14.8	4.72	1.87	4.82	2.11	0.88	1.25
Merged-chr9-20975856-3	chr9	20975350	20976350	+	705.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010333, intron 1 of 1)	intron (NM_010333, intron 1 of 1)	943.0	NM_010333	14739.0	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	50.34	39.17	35.15	35.76	35.45	45.01	65.48	63.23	18.74
Merged-chr9-7789206-3	chr9	7788710	7789710	+	705.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152989, intron 3 of 5)	intron (NR_152989, intron 3 of 5)	4820.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	45.19	52.07	46.25	46.56	41.99	61.89	29.57	30.95	35.6
Merged-chr16-65371122-2	chr16	65370626	65371626	+	705.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-149503.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.0	1.84	0.0	2.7	3.27	0.8	2.11	3.54	3.75
Merged-chr2-23097221-3	chr2	23096699	23097699	+	705.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355638, intron 10 of 13)	MTEb|LTR|ERVL-MaLR	28127.0	NM_001355638	74159.0	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	10.87	13.36	8.32	6.07	8.86	5.63	11.62	4.42	12.49
Merged-chr6-72552266-2	chr6	72551759	72552759	+	705.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	MER31A|LTR|ERV1	2612.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	51.48	61.28	50.87	62.07	50.38	98.87	72.88	58.81	52.46
Merged-chr19-41914171-2	chr19	41913607	41914607	+	705.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023418, intron 1 of 3)	intron (NM_023418, intron 1 of 3)	2236.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	20.02	17.51	24.05	37.11	22.39	20.9	21.12	14.59	10.62
Merged-chr12-75684246-2	chr12	75683730	75684730	+	705.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-14693.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	22.31	21.66	22.2	20.24	25.19	40.19	22.18	19.46	31.23
Merged-chr9-40756600-3	chr9	40756090	40757090	+	705.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-44683.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	10.3	10.6	9.25	11.47	7.93	6.43	14.79	7.52	6.25
Merged-chr7-138919230-3	chr7	138918727	138919727	+	705.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9721.0	NM_009760	12176.0	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	17.73	16.13	5.55	24.29	20.53	27.33	12.67	9.29	7.49
Merged-chr7-16950361-3	chr7	16949870	16950870	+	705.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5688.0	NM_001099636	434128.0	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	10.87	3.69	4.62	4.05	0.93	8.84	0.0	0.88	4.37
Merged-chr11-4194844-2	chr11	4194380	4195380	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	8047.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	155.6	141.46	58.27	145.06	115.69	56.27	89.78	90.64	24.36
Merged-chr15-58415933-2	chr15	58415484	58416484	+	705.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145959, intron 1 of 23)	intron (NM_145959, intron 1 of 23)	516.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	324.35	261.73	235.86	286.08	211.79	170.4	289.39	249.82	149.89
Merged-chr1-89463311-1	chr1	89462811	89463811	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	8500.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.15	1.38	1.85	4.72	4.2	0.0	8.45	3.54	3.75
Merged-chr6-129213742-2	chr6	129213261	129214261	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24284.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	24.6	30.87	12.02	21.59	14.93	20.09	23.24	11.94	28.1
Merged-chr2-118587836-2	chr2	118587335	118588335	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-10376.0	NM_009773	12236.0	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	2.29	0.92	3.7	3.37	2.8	3.22	3.17	1.77	5.0
Merged-chr12-16874370-2	chr12	16873917	16874917	+	705.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20561.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	61.78	66.35	55.5	51.28	67.18	61.89	15.84	17.69	28.73
Merged-chr12-75738665-2	chr12	75738162	75739162	+	705.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2933.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	45.76	53.45	49.02	51.28	46.65	32.96	62.31	49.96	29.35
Merged-chr17-86770002-3	chr17	86769472	86770472	+	705.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	intron (NM_010137, intron 1 of 15)	16108.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	12.01	10.6	5.55	26.99	26.59	19.29	0.0	9.29	5.0
Merged-chr17-49422254-3	chr17	49421767	49422767	+	705.188904	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-6097.0	NM_028464	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	20.59	18.43	24.97	15.52	16.79	57.07	15.84	11.05	22.48
Merged-chr3-104961714-3	chr3	104961229	104962229	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009520)	promoter-TSS (NM_009520)	-20.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	8.58	4.61	3.7	0.0	0.0	1.61	7.39	2.65	1.87
Merged-chr9-107769703-3	chr9	107769179	107770179	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153191, intron 1 of 23)	intron (NR_153191, intron 1 of 23)	1323.0	NM_148930	83486.0	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	42.9	48.84	24.05	45.88	30.79	39.39	57.03	70.75	33.72
Merged-chr11-82779055-3	chr11	82778546	82779546	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_126067)	TTS (NR_126067)	1996.0	NR_126068	100503272.0	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	24.6	23.5	22.2	19.57	8.4	35.37	34.85	35.37	24.98
Merged-chr11-118404671-3	chr11	118404176	118405176	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2717.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	22.88	11.52	12.95	17.54	12.13	11.25	23.24	11.94	14.36
Merged-chr8-70540588-3	chr8	70540048	70541048	+	705.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	873.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	113.84	105.06	54.57	164.63	136.22	89.22	120.41	102.58	59.33
Merged-chr17-69421782-2	chr17	69421284	69422284	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5337.0	NR_026848	77533.0	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	6.29	3.69	2.77	2.02	3.73	0.0	3.17	7.52	0.0
Merged-chr9-75404926-2	chr9	75404445	75405445	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015806, intron 1 of 5)	MTD|LTR|ERVL-MaLR	4414.0	NM_027418	50772.0	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	6.86	12.9	11.1	10.8	7.46	15.27	26.4	11.94	21.86
Merged-chr6-39508268-2	chr6	39507776	39508776	+	705.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172477, exon 3 of 19)	exon (NM_172477, exon 3 of 19)	49558.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	12.01	16.13	15.72	26.99	14.46	28.94	11.62	7.52	8.74
Merged-chr6-5382731-2	chr6	5382221	5383221	+	705.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023048)	promoter-TSS (NM_023048)	-665.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	6.29	1.84	7.4	1.35	1.4	0.0	6.34	7.96	3.75
Merged-chr10-40384019-3	chr10	40383533	40384533	+	705.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	34725.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	5.15	8.29	8.32	8.77	5.6	9.65	5.28	4.86	2.5
Merged-chr8-25068322-2	chr8	25067770	25068770	+	705.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 3 of 11)	intron (NM_031257, intron 3 of 11)	-29308.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	17.73	22.58	20.35	31.71	30.32	48.23	24.29	11.5	19.98
Merged-chr2-102882360-2	chr2	102881874	102882874	+	705.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	19291.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	30.32	29.49	36.07	37.11	25.66	45.82	38.02	39.8	29.35
Merged-chr7-118487200-2	chr7	118486687	118487687	+	705.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033380, exon 1 of 1)	3' UTR (NM_001033380, exon 1 of 1)	4788.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	55.49	78.33	23.12	49.93	62.05	70.73	77.1	94.62	50.59
Merged-chr1-43472148-3	chr1	43471646	43472646	+	705.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	26395.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	9.72	8.29	7.4	8.77	7.93	3.22	17.96	7.07	12.49
Merged-chr2-103906763-2	chr2	103906276	103907276	+	705.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131913, intron 3 of 6)	intron (NR_131913, intron 3 of 6)	5825.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	12.59	18.43	11.1	14.84	13.06	20.09	7.39	7.96	13.74
Merged-chr11-51582929-3	chr11	51582423	51583423	+	705.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_153393, exon 29 of 29)	3' UTR (NM_153393, exon 29 of 29)	-1834.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	12.01	7.37	9.25	8.77	7.0	8.04	3.17	1.77	11.87
Merged-chr3-83823973-3	chr3	83823487	83824487	+	705.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	17621.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	23.45	20.27	28.67	35.09	20.06	32.15	21.12	22.11	19.98
Merged-chr19-59344476-3	chr19	59344002	59345002	+	705.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	1278.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	28.03	24.42	30.52	16.87	10.73	16.88	27.46	17.69	17.49
Merged-chr6-51612633-3	chr6	51612132	51613132	+	705.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	67339.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	24.03	20.74	18.5	26.99	21.93	30.54	30.63	18.57	29.98
Merged-chr5-63859052-2	chr5	63858548	63859548	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 1 of 3)	intron (NM_029554, intron 1 of 3)	46553.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	4.0	7.83	14.8	5.4	7.46	3.22	9.51	11.05	7.49
Merged-chr2-131095047-1	chr2	131094547	131095547	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8282.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	18.88	8.29	11.1	14.17	7.46	14.47	8.45	5.31	8.12
Merged-chr6-97281921-1	chr6	97281421	97282421	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29141.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	10.87	8.75	10.17	10.12	7.46	10.45	17.96	7.96	8.74
Merged-chr16-22043985-1	chr16	22043485	22044485	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 15 of 16)	intron (NR_027488, intron 15 of 16)	34501.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	10.3	13.36	30.52	17.54	13.53	39.39	10.56	7.07	13.12
Merged-chr4-99175344-1	chr4	99174844	99175844	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18590.0	NM_175029	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	14.3	18.89	13.87	10.12	8.86	19.29	8.45	14.59	18.11
Merged-chr2-75650592-1	chr2	75650092	75651092	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8667.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.15	3.69	1.85	2.7	4.2	6.43	9.51	9.73	5.0
Merged-chr10-122105607-1	chr10	122105107	122106107	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_153059	216395.0	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	4.0	1.38	0.92	5.4	3.27	0.0	4.22	3.1	1.25
Merged-chr7-118702267-1	chr7	118701767	118702767	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019580, intron 1 of 5)	B1_Mur1|SINE|Alu	3471.0	NM_019580	56209.0	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	15.45	9.22	5.55	14.84	17.26	12.86	27.46	24.76	17.49
Merged-chr3-109273239-2	chr3	109272754	109273754	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67429.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.86	5.53	1.85	10.12	8.4	4.02	2.11	4.42	1.25
Merged-chr12-85703661-3	chr12	85703163	85704163	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	16943.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	30.32	24.88	25.9	28.34	14.46	25.72	28.52	17.69	9.99
Merged-chr7-4966708-1	chr7	4966208	4967208	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2360.0	NM_001146329	381836.0	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	2.86	5.53	4.62	4.72	3.27	4.82	3.17	0.0	0.0
Merged-chrX-12240564-1	chrX	12240064	12241064	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80209.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	1.14	2.3	0.0	1.35	0.0	0.0	0.0	1.33	0.0
Merged-chr16-76053321-1	chr16	76052821	76053821	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	52537.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	20.59	29.03	18.5	23.62	26.12	19.29	29.57	22.55	16.86
Merged-chr10-81133888-1	chr10	81133388	81134388	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-2383.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	114.41	95.84	76.77	131.57	80.24	81.99	136.25	136.19	76.82
Merged-chr10-25196512-2	chr10	25196005	25197005	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	3665.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	1.72	7.83	1.85	3.37	3.27	6.43	2.11	1.77	5.0
Merged-chr17-72604732-1	chr17	72604232	72605232	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007439)	promoter-TSS (NM_007439)	-425.0	NM_007439	11682.0	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	3.43	0.0	3.7	2.02	0.93	0.0	1.06	0.44	2.5
Merged-chr1-6499047-2	chr1	6498557	6499557	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	L1MA9|LINE|L1	11826.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	14.87	12.9	11.1	2.7	6.06	8.04	12.67	5.75	7.49
Merged-chr3-152212037-1	chr3	152211537	152212537	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355374, intron 1 of 19)	intron (NM_001355374, intron 1 of 19)	1615.0	NM_001355374	51886.0	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	28.03	25.34	20.35	39.81	27.52	14.47	36.97	36.7	18.11
Merged-chr12-17531016-1	chr12	17530516	17531516	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13857.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	4.0	0.92	0.0	5.4	1.4	3.22	5.28	2.21	0.0
Merged-chr15-25826624-1	chr15	25826124	25827124	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B1|LTR|ERVL	-16674.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	8.58	5.53	3.7	6.07	3.27	8.04	17.96	11.5	3.75
Merged-chr10-68673681-2	chr10	68673177	68674177	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1E2|LTR|ERVL-MaLR	-50069.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.57	5.53	8.32	5.4	6.06	1.61	4.22	4.42	1.25
Merged-chrX-105849447-1	chrX	105848947	105849947	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009530, intron 15 of 34)	intron (NM_009530, intron 15 of 34)	79925.0	NM_009530	22589.0	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	ATRX, chromatin remodeler	protein-coding	5.72	0.92	7.4	2.7	3.27	2.41	6.34	8.84	6.25
Merged-chr4-110665180-1	chr4	110664680	110665680	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	L1_Mus2|LINE|L1	267482.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	2.29	5.99	5.55	2.02	3.27	14.47	11.62	5.75	5.0
Merged-chr13-104823369-1	chr13	104822869	104823869	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026075, intron 1 of 4)	intron (NM_026075, intron 1 of 4)	6199.0	NR_135272	67288.0	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	13.16	15.67	9.25	10.12	6.53	9.65	10.56	5.31	25.61
Merged-chr17-80291389-3	chr17	80290909	80291909	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163759)	promoter-TSS (NM_001163759)	-933.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	6.29	2.76	5.55	2.02	2.33	4.82	3.17	2.65	3.75
Merged-chr16-10846691-2	chr16	10846189	10847189	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11630.0	NM_001162932	223970.0	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.0	0.46	3.7	6.07	0.93	0.8	0.0	0.88	2.5
Merged-chr19-5054028-2	chr19	5053527	5054527	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145495, intron 9 of 9)	intron (NM_145495, intron 9 of 9)	3219.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	1.14	3.23	0.92	0.0	0.93	0.0	2.11	0.88	1.25
Merged-chr5-122044751-1	chr5	122044251	122045251	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312908, intron 1 of 22)	(CA)n|Simple_repeat|Simple_repeat	3074.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.0	0.0	0.92	2.7	1.4	1.61	5.28	0.0	0.0
Merged-chr2-37716433-1	chr2	37715933	37716933	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28149.0	NR_039590	100628597.0		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	2.29	3.23	3.7	2.7	4.67	0.8	4.22	1.77	1.25
Merged-chr10-25312074-1	chr10	25311574	25312574	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12911.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.58	1.84	6.47	3.37	5.6	1.61	7.39	5.31	9.37
Merged-chr10-78455573-1	chr10	78455073	78456073	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	9375.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	13.16	8.75	12.02	15.52	9.8	12.86	11.62	3.98	5.0
Merged-chr4-133847354-1	chr4	133846854	133847854	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001285506)	TTS (NM_001285506)	27377.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	1.14	2.76	1.85	6.07	0.47	4.82	87.66	81.8	44.97
Merged-chr5-105154014-1	chr5	105153514	105154514	+	705.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-14428.0	NM_001359080	17472.0	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	13.16	7.83	16.65	5.4	5.6	4.82	15.84	12.38	7.49
Merged-chr3-75910440-1	chr3	75909940	75910940	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291069, intron 2 of 15)	intron (NM_001291069, intron 2 of 15)	46509.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	6.86	4.61	3.7	1.35	2.8	1.61	7.39	2.65	2.5
Merged-chr1-189654595-2	chr1	189654080	189655080	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081363, exon 13 of 18)	exon (NM_001081363, exon 13 of 18)	33506.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	10.3	6.91	7.4	15.52	8.4	12.86	10.56	2.65	15.61
Merged-chr1-33892979-2	chr1	33892480	33893480	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	intron (NM_177235, intron 1 of 6)	14641.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	7.44	4.61	3.7	6.07	4.2	2.41	1.06	7.07	2.5
Merged-chr9-105656406-2	chr9	105655900	105656900	+	705.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081309, intron 6 of 19)	MTD|LTR|ERVL-MaLR	13405.0	NM_001081309	75669.0	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	14.3	17.05	20.35	12.14	13.53	21.7	12.67	13.27	11.24
Merged-chr7-49252633-1	chr7	49252133	49253133	+	705.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	6444.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	12.01	10.14	14.8	22.27	38.25	32.96	12.67	12.38	10.62
Merged-chr6-90422681-3	chr6	90422161	90423161	+	704.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173775, intron 2 of 16)	intron (NM_173775, intron 2 of 16)	5819.0	NM_173775	243538.0	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	5.15	5.07	1.85	3.37	0.47	3.22	4.22	3.98	1.25
Merged-chr6-140763753-2	chr6	140763261	140764261	+	704.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136876.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	16.02	16.59	11.1	15.52	16.33	23.31	26.4	28.74	8.74
Merged-chr9-109046437-3	chr9	109045963	109046963	+	704.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357932, intron 2 of 5)	B1_Mur2|SINE|Alu	-4633.0	NM_001357935	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	11.44	11.52	7.4	7.42	5.13	7.23	6.34	3.98	8.74
Merged-chr17-29259685-3	chr17	29259185	29260185	+	704.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026845, intron 2 of 3)	intron (NM_026845, intron 2 of 3)	4286.0	NM_026845	68816.0	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	4.58	1.84	7.4	1.35	0.47	3.22	5.28	1.33	1.25
Merged-chr2-118490342-3	chr2	118489840	118490840	+	704.844421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10644.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	12.59	12.9	17.57	18.89	23.79	8.04	42.25	44.66	29.98
Merged-chr9-37082412-2	chr9	37081911	37082911	+	704.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	64911.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	6.29	5.53	1.85	8.1	3.27	4.82	0.0	1.77	3.12
Merged-chr19-34879741-2	chr19	34879257	34880257	+	704.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114339)	promoter-TSS (NM_001114339)	-302.0	NM_001114339	75735.0	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	24.6	18.89	7.4	33.06	9.8	16.88	14.79	12.38	17.49
Merged-chr2-153543173-2	chr2	153542685	153543685	+	704.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-13214.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.0	6.91	7.4	16.19	9.33	14.47	2.11	6.63	6.87
Merged-chr7-134689653-3	chr7	134689167	134690167	+	704.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	18980.0	NM_001033420	330662.0	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	38.33	23.5	16.65	43.86	12.13	22.51	33.8	34.49	24.98
Merged-chr3-8989034-2	chr3	8988537	8989537	+	704.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	15167.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	25.17	18.89	15.72	16.87	20.99	23.31	20.07	35.82	19.36
Merged-chr7-127104733-3	chr7	127104242	127105242	+	704.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13306.0	NM_178901	101602.0	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	3.43	2.76	0.0	5.4	5.6	1.61	9.51	7.96	8.74
Merged-chr4-117288161-3	chr4	117287654	117288654	+	704.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310730, intron 2 of 10)	MIRb|SINE|MIR	1301.0	NM_001310730	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	43.48	50.23	30.52	48.58	29.86	54.66	33.8	38.91	40.59
Merged-chr16-44002255-2	chr16	44001758	44002758	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359085, intron 8 of 16)	intron (NM_001359085, intron 8 of 16)	-11594.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	6.86	3.23	3.7	6.07	0.0	3.22	2.11	2.21	5.0
Merged-chr15-67434487-2	chr15	67434003	67435003	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	207734.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.43	4.61	1.85	2.7	0.47	1.61	0.0	1.77	2.5
Merged-chr12-105025495-2	chr12	105024986	105025986	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5655.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	2.86	0.92	1.85	0.0	2.33	0.0	1.06	3.54	5.0
Merged-chr11-116615350-1	chr11	116614850	116615850	+	704.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	8902.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	148.16	102.29	73.07	141.02	81.64	118.16	97.17	116.73	58.08
Merged-chr4-81745274-3	chr4	81744776	81745776	+	704.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-258263.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	16.02	26.26	20.35	18.89	17.73	30.54	25.35	15.03	13.12
Merged-chr4-124805212-3	chr4	124804705	124805705	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	2656.0	NM_008636	17764.0	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	21.74	17.97	7.4	8.1	4.67	16.08	8.45	13.71	6.87
Merged-chr2-61137026-1	chr2	61136526	61137526	+	704.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-161875.0	NR_045335	100038493.0	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	8.01	5.07	0.0	5.4	2.33	3.22	7.39	2.65	1.25
Merged-chr12-12148055-3	chr12	12147544	12148544	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114095.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.57	4.61	0.0	2.02	2.33	1.61	2.11	1.77	3.75
Merged-chr6-116733743-3	chr6	116733259	116734259	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17001.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	2.29	1.38	0.0	1.35	2.8	0.0	5.28	4.42	1.87
Merged-chr12-79092765-3	chr12	79092252	79093252	+	704.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110486, intron 2 of 2)	L1MDa|LINE|L1	-3082.0	NM_029988	110417.0	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	6.29	8.75	3.7	10.12	3.73	4.82	6.34	2.65	5.0
Merged-chr5-65260262-1	chr5	65259762	65260762	+	704.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359879)	TTS (NM_001359879)	60566.0	NM_153391	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	4.0	8.29	5.55	22.27	10.73	4.82	10.56	10.61	5.0
Merged-chr9-106386627-2	chr9	106386136	106387136	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18004.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.58	0.92	2.77	1.35	2.33	4.02	11.62	3.54	2.5
Merged-chr15-103316628-2	chr15	103316116	103317116	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356627, intron 4 of 7)	intron (NM_001356627, intron 4 of 7)	-6178.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	6.86	3.69	15.72	6.07	6.53	20.09	6.34	2.21	14.36
Merged-chr10-13090848-2	chr10	13090390	13091390	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_131912)	promoter-TSS (NR_131912)	45.0	NR_131912	338438.0		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	1.14	4.61	0.0	11.47	1.87	6.43	7.39	3.54	5.0
Merged-chr10-83344015-2	chr10	83343521	83344521	+	704.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6204.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	10.87	8.29	4.62	8.77	6.53	4.02	6.34	7.07	6.87
Merged-chr4-150495707-3	chr4	150495214	150496214	+	704.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 7 of 22)	intron (NM_001085492, intron 7 of 22)	156460.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	14.3	20.27	7.4	16.19	6.53	8.04	4.22	2.21	5.0
Merged-chr18-9494507-3	chr18	9494017	9495017	+	704.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44363.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	18.88	9.68	1.85	39.13	31.26	8.04	33.8	22.11	11.87
Merged-chr5-115359031-3	chr5	115358537	115359537	+	704.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10082.0	NM_007748	12861.0	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	2.29	3.23	0.92	4.72	0.47	4.82	0.0	3.54	5.0
Merged-chr2-102914349-2	chr2	102913833	102914833	+	704.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-12668.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.87	2.76	0.0	3.37	3.27	1.61	9.51	6.19	12.49
Merged-chr1-131091054-3	chr1	131090572	131091572	+	704.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	6771.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	57.78	57.14	53.65	107.95	69.51	53.85	83.44	60.13	36.85
Merged-chr12-104418633-3	chr12	104418109	104419109	+	704.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	11901.0	NM_009252	20716.0	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	3.43	1.38	1.85	3.37	0.93	6.43	3.17	2.65	3.12
Merged-chr2-143917799-3	chr2	143917294	143918294	+	704.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019771, intron 1 of 3)	intron (NM_019771, intron 1 of 3)	2463.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	6.86	8.29	16.65	19.57	6.53	12.06	10.56	0.88	5.0
Merged-chr7-109781487-3	chr7	109780961	109781961	+	704.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020610)	promoter-TSS (NM_020610)	84.0	NM_020610	78593.0	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	3.43	3.23	1.85	4.72	3.27	3.22	2.11	4.86	1.25
Merged-chr11-55078012-2	chr11	55077503	55078503	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177471, intron 1 of 6)	intron (NM_177471, intron 1 of 6)	128.0	NM_177471	52570.0	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	38.33	28.57	49.95	47.9	43.85	54.66	42.25	30.07	40.59
Merged-chr11-94149854-2	chr11	94149356	94150356	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	-61598.0	NM_009427	22057.0	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	8.01	4.15	0.0	8.1	4.67	2.41	5.28	11.05	0.0
Merged-chr6-127035007-1	chr6	127034507	127035507	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19465.0	NM_010204	14177.0	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	1.72	2.76	1.85	2.02	0.47	6.43	2.11	0.44	2.5
Merged-chr7-97210176-2	chr7	97209674	97210674	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	115790.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	85.24	95.38	30.52	94.46	76.51	71.54	125.69	107.45	80.56
Merged-chr9-96504281-2	chr9	96503798	96504798	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25623.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	9.15	4.15	7.4	3.37	7.0	16.08	8.45	10.17	12.49
Merged-chr10-34234245-2	chr10	34233740	34234740	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-26689.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	40.04	17.51	15.72	35.09	14.0	16.08	39.08	23.88	16.86
Merged-chr18-24145274-2	chr18	24144764	24145764	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23445.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	7.44	2.3	0.0	10.8	3.73	3.22	2.11	3.54	8.74
Merged-chr5-75143379-3	chr5	75142868	75143868	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045792, intron 3 of 3)	intron (NR_045792, intron 3 of 3)	-8883.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	2.29	1.38	5.55	4.05	2.33	0.8	5.28	3.1	1.25
Merged-chr7-123203829-2	chr7	123203329	123204329	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR31|LTR|ERV1	-11037.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	10.87	10.6	3.7	2.7	3.27	7.23	5.28	3.54	2.5
Merged-chr7-72299896-2	chr7	72299396	72300396	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	intron (NM_001024703, intron 1 of 22)	6699.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	10.87	14.75	5.55	12.82	13.53	8.04	0.0	0.44	7.49
Merged-chr7-101649613-2	chr7	101649123	101650123	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14145.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	139.01	143.3	74.0	136.97	95.63	106.9	77.1	94.18	29.98
Merged-chr4-105556968-2	chr4	105556473	105557473	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	399626.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	8.01	18.43	13.87	25.64	31.26	27.33	22.18	18.57	21.86
Merged-chr5-124521757-1	chr5	124521257	124522257	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	9634.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	5.15	4.61	3.7	8.77	7.46	6.43	4.22	6.63	9.99
Merged-chr7-45556007-1	chr7	45555507	45556507	+	704.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025330, intron 1 of 8)	intron (NM_025330, intron 1 of 8)	1079.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	9.72	4.61	5.55	5.4	1.87	1.61	5.28	2.21	2.5
Merged-chr10-127076271-2	chr10	127075770	127076770	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2637.0	NM_001301014	216439.0	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.57	0.92	0.0	3.37	3.27	0.0	8.45	5.31	4.37
Merged-chr4-58952126-1	chr4	58951626	58952626	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355408, intron 5 of 6)	intron (NM_001355408, intron 5 of 6)	8498.0	NM_001355408	100041581.0	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	0.0	3.69	1.85	1.35	2.8	3.22	3.17	0.44	6.25
Merged-chr19-53318692-1	chr19	53318192	53319192	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360348, intron 1 of 5)	intron (NM_001360348, intron 1 of 5)	7247.0	NM_001360348	17859.0	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	1.72	2.3	1.85	6.07	5.13	11.25	3.17	6.19	3.75
Merged-chr3-38519591-1	chr3	38519091	38520091	+	704.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-34775.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	4.58	3.23	3.7	1.35	5.13	7.23	2.11	0.88	3.12
Merged-chr7-130117328-2	chr7	130116842	130117842	+	704.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	149466.0	NM_010207	14183.0	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	4.0	3.69	7.4	6.07	3.73	0.0	2.11	3.1	3.75
Merged-chr1-191124024-4	chr1	191123616	191124616	+	704.458313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25702.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	37.76	34.56	31.45	28.34	12.13	24.92	20.07	10.17	17.49
Merged-chr5-3647110-3	chr5	3646540	3647540	+	704.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026033, intron 1 of 4)	intron (NM_026033, intron 1 of 4)	896.0	NM_026033	67210.0	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|Odag	GATA zinc finger domain containing 1	protein-coding	32.04	24.88	39.77	24.96	19.13	35.37	52.81	26.53	36.22
Merged-chr3-105841713-3	chr3	105841216	105842216	+	704.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	26149.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	40.62	29.95	24.05	30.36	31.26	36.97	46.47	33.6	31.85
Merged-chr12-25164929-2	chr12	25164421	25165421	+	704.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35747.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	8.01	8.29	3.7	4.72	1.87	4.82	15.84	7.52	0.62
Merged-chr14-46129704-2	chr14	46129200	46130200	+	704.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	45673.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	14.87	18.43	9.25	17.54	13.53	11.25	7.39	3.98	4.37
Merged-chr7-135605236-2	chr7	135604743	135605743	+	704.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316679)	promoter-TSS (NM_001316679)	-585.0	NM_001316679	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	18.31	23.04	18.5	19.57	16.33	35.37	15.84	14.15	18.74
Merged-chr19-56655817-2	chr19	56655341	56656341	+	704.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66531.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	24.6	25.8	12.95	35.09	27.06	28.13	82.38	65.0	42.47
Merged-chr11-83535986-2	chr11	83535481	83536481	+	704.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5463.0	NM_013653	20304.0	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	101.83	30.87	28.67	49.25	23.79	24.11	45.42	31.84	16.24
Merged-chr11-79083728-1	chr11	79083228	79084228	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	-23892.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	29.17	15.21	16.65	31.04	19.13	28.13	26.4	17.24	19.36
Merged-chr10-99428581-3	chr10	99428039	99429039	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165308.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	22.31	18.43	18.5	11.47	19.13	16.08	19.01	22.55	13.74
Merged-chr4-114925432-3	chr4	114924913	114925913	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_015758, exon 1 of 1)	exon (NM_015758, exon 1 of 1)	600.0	NM_015758	30923.0	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	3.43	1.84	1.85	6.07	2.8	1.61	4.22	0.88	2.5
Merged-chr1-56980209-3	chr1	56979696	56980696	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358580)	promoter-TSS (NM_001358580)	52.0	NM_001358580	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	1.72	0.92	6.47	2.7	4.67	4.02	3.17	0.88	0.0
Merged-chr14-105505218-1	chr14	105504718	105505718	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045921, intron 1 of 2)	intron (NR_045921, intron 1 of 2)	6430.0	NR_045921	74864.0	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	10.87	15.21	9.25	4.72	5.6	8.04	10.56	9.29	17.49
Merged-chr1-181616298-3	chr1	181615803	181616803	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-104852.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	2.86	4.15	0.92	4.72	2.33	0.0	3.17	1.33	6.25
Merged-chr1-51517657-1	chr1	51517157	51518157	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-39258.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	21.74	23.96	24.05	28.34	27.99	29.74	27.46	15.03	21.86
Merged-chr17-8468973-1	chr17	8468473	8469473	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34550.0	NM_009309	20997.0	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tbxt|Tl2|Tl3|cou|me75	brachyury, T-box transcription factor T	protein-coding	1.14	0.46	0.0	4.72	0.93	1.61	3.17	0.44	0.0
Merged-chr17-56005887-3	chr17	56005389	56006389	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102313)	promoter-TSS (NR_102313)	-283.0	NR_102313	106766.0	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	9.72	4.15	0.0	10.12	3.73	8.04	3.17	1.77	6.25
Merged-chr5-123714825-1	chr5	123714325	123715325	+	704.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027494, intron 3 of 13)	intron (NM_027494, intron 3 of 13)	6219.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	24.6	31.33	47.17	41.83	41.52	35.37	98.23	93.3	39.97
Merged-chr2-127080760-3	chr2	127080207	127081207	+	704.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026678, intron 2 of 7)	intron (NM_026678, intron 2 of 7)	10050.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	140.73	170.49	155.39	159.91	137.15	155.13	193.28	190.57	117.41
Merged-chr10-120151786-2	chr10	120151297	120152297	+	704.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 8 of 11)	intron (NM_001359184, intron 8 of 11)	-38832.0	NM_080446	117599.0	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	6.86	1.84	3.7	4.05	5.6	3.22	12.67	6.19	3.75
Merged-chr11-50827758-3	chr11	50827231	50828231	+	704.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013922)	promoter-TSS (NM_013922)	0.0	NM_013922	30944.0	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	10.3	11.06	9.25	14.84	14.93	15.27	14.79	13.71	9.99
Merged-chr13-92038221-2	chr13	92037745	92038745	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50203.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	2.86	5.07	1.85	14.84	13.53	19.29	11.62	15.48	16.24
Merged-chr7-141461772-2	chr7	141461252	141462252	+	704.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_152220, exon 2 of 2)	non-coding (NR_152220, exon 2 of 2)	658.0	NM_001025103	213573.0	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	59.49	38.25	35.15	46.56	39.65	49.03	59.15	61.02	52.46
Merged-chr7-121706714-2	chr7	121706174	121707174	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033173, exon 1 of 16)	exon (NM_001033173, exon 1 of 16)	579.0	NM_001033173	76179.0	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	4.58	5.53	4.62	12.14	5.6	8.04	11.62	0.88	11.24
Merged-chr2-30078171-2	chr2	30077669	30078669	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153805)	promoter-TSS (NM_153805)	-529.0	NM_153805	263803.0	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	24.6	16.59	15.72	16.87	11.66	31.35	23.24	20.78	8.12
Merged-chr11-104440698-2	chr11	104440200	104441200	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1591.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	172.76	224.4	98.05	215.91	198.27	151.11	246.09	291.83	122.41
Merged-chr1-95604017-2	chr1	95603538	95604538	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	L1_Mus2|LINE|L1	63556.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	16.02	10.14	11.1	10.8	10.26	17.68	6.34	10.61	9.99
Merged-chr14-77841701-1	chr14	77841201	77842201	+	704.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 4 of 5)	intron (NM_025384, intron 4 of 5)	33216.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	2.86	3.23	3.7	2.7	2.33	4.02	24.29	18.13	21.23
Merged-chr19-4930762-2	chr19	4930233	4931233	+	704.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001347422, exon 6 of 6)	3' UTR (NM_001347422, exon 6 of 6)	-2446.0	NM_133803	75221.0	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324|DPP III	dipeptidylpeptidase 3	protein-coding	4.0	9.68	10.17	8.77	9.8	12.86	6.34	6.19	6.25
Merged-chr16-58685769-3	chr16	58685273	58686273	+	704.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15565.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	24.03	16.59	9.25	14.84	21.93	26.53	17.96	15.03	10.62
Merged-chr11-104387538-3	chr11	104387026	104388026	+	704.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 3 of 14)	intron (NM_001359634, intron 3 of 14)	54765.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	16.02	18.43	7.4	17.54	17.73	28.94	19.01	21.22	15.61
Merged-chr6-129491474-3	chr6	129490985	129491985	+	704.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301096, intron 1 of 3)	intron (NM_001301096, intron 1 of 3)	15680.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	11.44	3.69	1.85	4.72	9.8	4.82	4.22	4.42	8.74
Merged-chr14-66225692-2	chr14	66225201	66226201	+	704.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-11877.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	103.54	90.31	90.65	76.24	63.45	69.13	60.2	74.73	69.32
Merged-chr11-115099693-2	chr11	115099203	115100203	+	704.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	8272.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	5.72	2.76	6.47	7.42	4.67	0.0	11.62	5.31	3.75
Merged-chr4-133238085-2	chr4	133237593	133238593	+	704.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2725.0	NM_016693	53608.0	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.57	0.92	0.92	5.4	0.93	3.22	2.11	2.21	1.25
Merged-chr2-118263981-3	chr2	118263487	118264487	+	704.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7021.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	69.22	103.68	26.82	58.7	31.26	20.09	42.25	47.75	35.6
Merged-chr6-113669867-4	chr6	113669332	113670332	+	704.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27218.0	NM_001347356	381801.0	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	113.84	100.45	84.17	122.12	78.37	72.34	81.33	114.08	57.46
Merged-chr9-66067767-3	chr9	66067279	66068279	+	704.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025612, intron 5 of 6)	intron (NM_001025612, intron 5 of 6)	1952.0	NM_001025612	382083.0	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	7.44	4.15	5.55	7.42	5.13	0.0	3.17	0.88	1.25
Merged-chr13-81135703-2	chr13	81135210	81136210	+	704.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	171636.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	129.28	122.11	112.84	116.05	103.56	142.27	115.12	150.34	98.05
Merged-chr2-147010328-2	chr2	147009835	147010835	+	704.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-2664.0	NM_001356403	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	22.88	16.59	14.8	20.24	13.53	24.11	25.35	21.67	22.48
Merged-chr15-85076501-2	chr15	85076001	85077001	+	704.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080470, intron 19 of 24)	RLTR42-int|LTR|ERVK	33759.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	13.16	10.6	12.02	12.82	5.6	16.88	12.67	9.73	10.62
Merged-chr3-87498323-3	chr3	87497823	87498823	+	704.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113238, intron 11 of 11)	Lx8|LINE|L1	-27255.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	49.77	65.43	48.1	49.93	39.65	46.62	35.91	48.64	24.36
Merged-chr4-48048137-3	chr4	48047633	48048633	+	704.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	2828.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.58	1.84	0.0	3.37	3.73	6.43	7.39	6.19	3.75
Merged-chr8-60865793-1	chr8	60865293	60866293	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24600.0	NM_028299	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	2.86	4.15	0.0	1.35	0.93	4.82	1.06	1.77	5.0
Merged-chr15-44625014-1	chr15	44624514	44625514	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357690, intron 2 of 6)	B3|SINE|B2	5373.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	1.72	3.23	0.0	4.05	7.0	8.84	4.22	3.1	3.75
Merged-chr4-133459116-1	chr4	133458616	133459616	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21017.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	10.87	15.21	19.42	16.19	9.33	16.08	2.11	0.0	3.75
Merged-chr2-109913070-1	chr2	109912570	109913570	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033473, intron 1 of 4)	RSINE1|SINE|B4	249.0	NR_033473	100038454.0	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	9.15	5.07	3.7	10.8	12.6	18.49	6.34	10.61	14.36
Merged-chr5-62893217-2	chr5	62892700	62893700	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79377.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.43	3.23	5.55	4.72	5.6	14.47	11.62	2.21	5.0
Merged-chr15-90634030-1	chr15	90633530	90634530	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357979, intron 3 of 18)	intron (NM_001357979, intron 3 of 18)	45358.0	NM_025815	66871.0	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	2.29	1.38	5.55	6.75	4.2	16.88	1.06	2.65	1.25
Merged-chr2-70842403-1	chr2	70841903	70842903	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16923.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	4.58	2.76	3.7	2.7	2.8	4.02	4.22	0.44	5.0
Merged-chr3-9711261-1	chr3	9710761	9711761	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-101176.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.72	4.61	6.47	2.7	0.93	6.43	4.22	1.33	2.5
Merged-chr11-21011014-1	chr11	21010514	21011514	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80310.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	22.88	25.8	19.42	24.29	18.66	41.8	29.57	18.13	25.61
Merged-chr16-44772726-2	chr16	44772217	44773217	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	6981.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	15.45	21.2	25.9	20.24	16.33	14.47	13.73	12.38	5.62
Merged-chr3-68744515-1	chr3	68744015	68745015	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16980.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	2.29	0.0	0.0	2.02	0.47	1.61	2.11	0.44	0.0
Merged-chr2-118743433-1	chr2	118742933	118743933	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2325.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	5.15	4.15	4.62	10.12	3.73	12.06	7.39	4.86	10.62
Merged-chr7-43659365-1	chr7	43658865	43659865	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031181, exon 2 of 7)	exon (NM_031181, exon 2 of 7)	796.0	NM_031181	83382.0	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	58.92	73.26	79.55	44.53	50.85	96.45	100.34	102.58	92.43
Merged-chr2-128763906-1	chr2	128763406	128764406	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54397.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	16.02	12.9	30.52	22.94	20.53	13.66	27.46	16.8	12.49
Merged-chr4-141363353-2	chr4	141362850	141363850	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4842.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	5.15	4.15	0.0	6.75	2.33	1.61	6.34	2.65	1.25
Merged-chr13-37960075-1	chr13	37959575	37960575	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34133.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	52.06	53.91	48.1	64.1	64.38	67.52	43.3	44.66	52.46
Merged-chr15-58734829-1	chr15	58734329	58735329	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	88598.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	42.9	42.85	36.07	49.93	42.45	45.01	41.19	28.74	21.86
Merged-chr12-54710708-1	chr12	54710208	54711208	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14814.0	NM_025456	66266.0	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	4.58	3.69	2.77	2.7	2.33	3.22	0.0	0.44	0.0
Merged-chr6-126792244-2	chr6	126791747	126792747	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51573.0	NM_013568	16494.0	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	6.29	1.38	1.85	2.7	1.87	0.0	1.06	0.88	5.0
Merged-chr2-165286976-1	chr2	165286476	165287476	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252575, intron 1 of 9)	intron (NM_001252575, intron 1 of 9)	811.0	NM_001252574	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	98.97	81.56	92.5	95.14	81.17	81.18	83.44	99.93	60.58
Merged-chr19-17359368-1	chr19	17358868	17359868	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	-2701.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	44.05	67.74	37.92	37.78	44.32	40.19	17.96	14.59	21.86
Merged-chr3-84175453-1	chr3	84174953	84175953	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_036654)	TTS (NR_036654)	815.0	NR_036654	624713.0	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	4.58	1.84	0.0	1.35	1.4	1.61	3.17	0.88	1.25
Merged-chr12-31938708-1	chr12	31938208	31939208	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177993, intron 3 of 8)	intron (NM_177993, intron 3 of 8)	11537.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	13.73	6.91	16.65	17.54	9.33	15.27	17.96	9.73	4.37
Merged-chr6-108384705-2	chr6	108384181	108385181	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 20 of 61)	intron (NM_010585, intron 20 of 61)	-105062.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	23.45	17.51	29.6	15.52	21.93	20.09	15.84	20.34	14.99
Merged-chr6-145142556-2	chr6	145142061	145143061	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008511, intron 3 of 18)	intron (NM_008511, intron 3 of 18)	-2914.0	NM_001361633	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	5.15	3.69	2.77	3.37	4.2	2.41	3.17	4.86	1.87
Merged-chr15-66559290-1	chr15	66558790	66559790	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172514, exon 2 of 10)	exon (NM_172514, exon 2 of 10)	1756.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	40.62	52.07	20.35	20.92	24.26	25.72	32.74	49.08	19.36
Merged-chr8-3328027-1	chr8	3327527	3328527	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25388.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	4.58	3.23	0.92	3.37	4.2	3.22	1.06	1.77	3.75
Merged-chr16-42608486-1	chr16	42607986	42608986	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	267101.0	NR_040521	75722.0	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	5.72	13.82	11.1	9.45	8.86	6.43	7.39	3.1	8.12
Merged-chr11-121053746-1	chr11	121053246	121054246	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_026907, exon 5 of 5)	3' UTR (NM_026907, exon 5 of 5)	9823.0	NM_026907	58210.0	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	3.43	2.76	1.85	2.7	1.87	0.0	4.22	1.33	0.0
Merged-chr8-108697823-1	chr8	108697323	108698323	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16821.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.44	4.61	8.32	9.45	3.27	4.82	6.34	6.63	0.62
Merged-chr3-94425934-1	chr3	94425434	94426434	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357713, exon 6 of 6)	exon (NM_001357713, exon 6 of 6)	10717.0	NM_016901	53814.0	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	5.72	1.84	8.32	8.77	4.67	1.61	1.06	5.31	3.12
Merged-chr2-33452343-1	chr2	33451843	33452843	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027947, exon 4 of 4)	3' UTR (NM_027947, exon 4 of 4)	16189.0	NM_027947	71834.0	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	3.43	6.91	0.92	4.05	2.33	8.04	8.45	6.19	6.25
Merged-chr10-42089308-3	chr10	42088814	42089814	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70932.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	9.15	0.92	1.85	6.07	1.87	3.22	2.11	1.33	6.25
Merged-chr6-93962506-1	chr6	93962006	93963006	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-48816.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	7.44	7.37	3.7	10.8	17.26	21.7	14.79	14.59	3.75
Merged-chr4-62654093-1	chr4	62653593	62654593	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-19881.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.0	1.84	0.0	1.35	1.87	4.82	3.17	0.44	3.75
Merged-chr13-24785941-1	chr13	24785441	24786441	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15716.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	10.87	7.83	0.0	14.84	5.13	1.61	15.84	9.73	8.74
Merged-chr6-97363397-1	chr6	97362897	97363897	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	L4_A_Mam|LINE|RTE-X	95889.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	9.72	9.22	16.65	9.45	4.67	12.86	14.79	9.73	13.12
Merged-chr15-97878915-1	chr15	97878415	97879415	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 3 of 9)	intron (NM_009504, intron 3 of 9)	29381.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	5.15	4.61	5.55	6.75	2.8	3.22	10.56	4.42	2.5
Merged-chr8-88274298-1	chr8	88273798	88274798	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007406, intron 1 of 27)	intron (NM_007406, intron 1 of 27)	1895.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.29	0.92	0.0	15.52	10.73	20.09	17.96	18.57	10.62
Merged-chr2-181458884-1	chr2	181458384	181459384	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028125, intron 1 of 2)	CpG	542.0	NM_028125	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	17.16	4.61	8.32	28.34	6.53	8.04	21.12	8.84	2.5
Merged-chr3-126673259-1	chr3	126672759	126673759	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	MTA_Mm|LTR|ERVL-MaLR	76308.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	13.16	10.14	3.7	8.77	6.06	1.61	17.96	20.34	20.61
Merged-chr1-4967195-1	chr1	4966695	4967695	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177795, intron 2 of 5)	intron (NM_001177795, intron 2 of 5)	51539.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	6.29	6.45	14.8	4.72	4.2	8.84	13.73	6.19	13.74
Merged-chr13-5443748-1	chr13	5443248	5444248	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	414344.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.58	11.06	0.0	14.17	9.33	6.43	1.06	0.88	10.62
Merged-chr4-156196777-1	chr4	156196277	156197277	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021604, intron 1 of 35)	CpG	711.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	10.3	4.15	5.55	5.4	4.67	12.86	9.51	3.98	5.62
Merged-chr3-107233654-3	chr3	107233182	107234182	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001256174, exon 3 of 3)	exon (NM_001256174, exon 3 of 3)	3068.0	NM_001256174	319929.0	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	7.44	4.61	1.85	2.7	1.4	1.61	5.28	3.98	0.62
Merged-chr1-85752431-1	chr1	85751931	85752931	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106172)	TTS (NR_106172)	483.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	23.45	18.89	16.65	48.58	29.86	40.99	28.52	26.09	17.49
Merged-chr8-40296620-1	chr8	40296120	40297120	+	704.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9667.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.86	3.23	1.85	3.37	4.2	0.0	0.0	0.44	3.12
Merged-chr3-105045569-1	chr3	105045069	105046069	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	PB1D7|SINE|Alu	7384.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	57.78	75.57	74.92	76.24	59.25	86.01	71.82	92.86	59.95
Merged-chr3-38173886-1	chr3	38173386	38174386	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	34233.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	3.43	2.3	8.32	2.02	1.87	0.8	3.17	5.31	0.0
Merged-chr4-119707989-1	chr4	119707489	119708489	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49044.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	5.72	2.76	5.55	2.7	2.33	1.61	1.06	1.77	9.37
Merged-chr3-131246837-1	chr3	131246337	131247337	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008212, intron 3 of 7)	intron (NM_008212, intron 3 of 7)	25264.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	10.3	3.23	0.0	4.72	5.6	3.22	2.11	3.1	3.75
Merged-chr3-89280141-1	chr3	89279641	89280641	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010107)	promoter-TSS (NM_010107)	-496.0	NM_010107	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	35.47	29.03	19.42	31.71	24.26	24.11	29.57	16.36	13.74
Merged-chr1-78488063-3	chr1	78487551	78488551	+	704.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001278075, intron 1 of 17)	intron (NM_001278075, intron 1 of 17)	846.0	NR_102758	23874.0	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	43.48	44.7	12.95	51.28	35.92	31.35	72.88	54.83	34.97
Merged-chr15-91169196-1	chr15	91168696	91169696	+	704.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 6 of 9)	intron (NM_011994, intron 6 of 9)	22811.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	25.74	31.79	17.57	58.7	39.19	25.72	95.06	92.41	41.84
Merged-chr9-99491227-2	chr9	99490732	99491732	+	703.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	20811.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	41.76	37.78	27.75	34.41	23.33	23.31	49.64	59.25	27.48
Merged-chr10-61399551-3	chr10	61399059	61400059	+	703.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16036.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	4.58	2.76	5.55	2.7	1.4	1.61	0.0	0.88	1.87
Merged-chr2-44922696-2	chr2	44922203	44923203	+	703.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61081.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	52.63	92.62	38.85	64.77	75.57	74.75	62.31	92.41	41.84
Merged-chr6-29621226-2	chr6	29620738	29621738	+	703.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11389.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	19.45	39.17	21.27	56.0	52.25	60.28	41.19	50.85	23.73
Merged-chr4-126114188-2	chr4	126113685	126114685	+	703.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	10228.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	5.15	3.69	3.7	6.07	2.8	1.61	4.22	2.65	3.75
Merged-chr2-131502726-3	chr2	131502233	131503233	+	703.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	10871.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	24.6	14.75	31.45	23.62	18.19	18.49	15.84	7.96	5.0
Merged-chr8-84708544-3	chr8	84707953	84708953	+	703.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081981, exon 11 of 11)	3' UTR (NM_001081981, exon 11 of 11)	6996.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	39.47	33.18	50.87	26.31	27.99	69.93	63.37	29.63	38.1
Merged-chr4-135709339-3	chr4	135708789	135709789	+	703.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-18870.0	NM_178257	230828.0	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	4.58	5.07	2.77	9.45	8.4	4.82	8.45	17.24	13.74
Merged-chr17-83786186-1	chr17	83785686	83786686	+	703.799988	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_054082, intron 11 of 16)	intron (NM_054082, intron 11 of 16)	60604.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	20.02	14.28	3.7	8.1	10.26	3.22	15.84	7.52	3.12
Merged-chr12-116077668-3	chr12	116077183	116078183	+	703.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009511)	promoter-TSS (NM_009511)	-43.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	7.44	5.53	1.85	3.37	1.87	2.41	1.06	0.88	0.0
Merged-chr9-22143340-3	chr9	22142842	22143842	+	703.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7596.0	NM_001102405	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	22.31	36.86	27.75	24.29	37.79	30.54	36.97	35.82	23.11
Merged-chr12-76265162-2	chr12	76264658	76265658	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138745, intron 1 of 27)	RLTR11B|LTR|ERVK	9926.0	NM_138745	108156.0	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	8.01	8.75	4.62	8.1	7.93	11.25	15.84	13.71	6.87
Merged-chr16-57593938-2	chr16	57593423	57594423	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	12944.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	6.86	3.23	1.85	3.37	2.8	3.22	3.17	1.33	1.25
Merged-chr16-32673057-2	chr16	32672536	32673536	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347185)	promoter-TSS (NM_001347185)	-118.0	NM_001347185	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	25.17	31.79	35.15	36.43	27.06	19.29	81.33	64.56	36.85
Merged-chr9-124103418-2	chr9	124102910	124103910	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009915, intron 1 of 2)	intron (NM_009915, intron 1 of 2)	1227.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	25.74	6.45	14.8	22.27	14.93	22.51	46.47	30.95	15.61
Merged-chr10-44384416-2	chr10	44383930	44384930	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24754.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	70.36	68.66	49.95	59.38	41.52	68.32	82.38	70.3	52.46
Merged-chr12-29698236-2	chr12	29697725	29698725	+	703.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	intron (NM_001361657, intron 3 of 24)	-11780.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	9.72	5.53	1.85	8.77	4.2	8.04	11.62	12.82	19.36
Merged-chr1-16227799-2	chr1	16227308	16228308	+	703.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121926.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	110.98	142.38	84.17	100.53	94.23	129.41	106.67	111.43	109.92
Merged-chr6-35597309-3	chr6	35596822	35597822	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57434.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	2.86	8.75	1.85	4.05	8.86	5.63	8.45	4.86	10.62
Merged-chr3-28236874-3	chr3	28236393	28237393	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26321.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	6.29	4.15	0.92	6.75	2.8	6.43	3.17	4.86	9.37
Merged-chr6-100438823-3	chr6	100438347	100439347	+	703.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-88553.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	7.44	1.38	6.47	5.4	3.27	1.61	4.22	5.75	3.75
Merged-chr13-44679421-1	chr13	44678921	44679921	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-51353.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.58	1.84	7.4	4.05	4.2	11.25	2.11	3.54	4.37
Merged-chr3-81933583-1	chr3	81933083	81934083	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177662, intron 1 of 7)	intron (NM_177662, intron 1 of 7)	982.0	NM_177662	229445.0	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	9.72	15.67	13.87	13.49	15.86	11.25	9.51	16.36	7.49
Merged-chr3-105865296-1	chr3	105864796	105865796	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER58A|DNA|hAT-Charlie	-5562.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	17.16	8.29	11.1	12.82	8.4	4.82	10.56	8.4	8.74
Merged-chr4-34238121-1	chr4	34237621	34238621	+	703.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188054.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	2.86	2.3	5.55	6.07	4.67	3.22	2.11	0.44	1.25
Merged-chr1-54774374-3	chr1	54773862	54774862	+	703.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081433, intron 4 of 27)	intron (NM_001081433, intron 4 of 27)	152025.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	10.3	9.68	5.55	12.14	11.2	8.04	7.39	6.63	1.87
Merged-chr6-123122697-2	chr6	123122199	123123199	+	703.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011999)	promoter-TSS (NM_011999)	9.0	NM_001170332	26888.0	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	43.48	42.39	53.65	45.21	37.32	74.75	36.97	30.07	35.6
Merged-chr3-55667307-2	chr3	55666817	55667817	+	703.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-115193.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	6.29	6.45	7.4	4.72	6.53	0.0	3.17	6.19	6.25
Merged-chr12-113098688-3	chr12	113098186	113099186	+	703.650024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346696, intron 1 of 19)	GC_rich|Low_complexity|Low_complexity	408.0	NM_054081	116870.0	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	20.59	17.51	16.65	24.29	12.6	20.9	21.12	11.5	11.24
Merged-chr5-142911715-3	chr5	142911237	142912237	+	703.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4983.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	36.04	48.38	49.95	26.31	20.53	45.01	35.91	46.87	38.72
Merged-chr16-32275211-3	chr16	32274720	32275720	+	703.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183283)	TTS (NM_183283)	-2241.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	14.3	12.44	14.8	8.77	7.46	15.27	16.9	9.29	7.49
Merged-chr3-21962487-3	chr3	21961971	21962971	+	703.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114181.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	24.03	26.26	19.42	20.92	16.79	11.25	27.46	20.34	26.23
Merged-chr11-50355662-2	chr11	50355145	50356145	+	703.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	2234.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	21.74	19.81	23.12	18.22	12.6	27.33	29.57	17.24	31.85
Merged-chr6-70849756-2	chr6	70849261	70850261	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313918, intron 1 of 2)	intron (NM_001313918, intron 1 of 2)	5246.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	8.01	22.58	5.55	18.22	14.93	17.68	17.96	15.92	9.99
Merged-chr10-110727989-2	chr10	110727507	110728507	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17432.0	NM_001358560	52679.0	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	4.0	2.3	3.7	5.4	2.33	0.0	1.06	1.77	0.0
Merged-chr16-12469776-1	chr16	12469276	12470276	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-341614.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	2.86	8.29	3.7	16.87	4.2	8.04	10.56	5.75	5.0
Merged-chr17-67246026-2	chr17	67245538	67246538	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MER2|DNA|TcMar-Tigger	108421.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	28.03	22.58	28.67	22.27	25.19	20.09	84.49	88.88	67.45
Merged-chr3-61393749-1	chr3	61393249	61394249	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29242.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	21.17	24.42	27.75	28.34	16.33	21.7	19.01	7.07	8.74
Merged-chr6-5384342-1	chr6	5383842	5384842	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023048, intron 1 of 5)	intron (NM_023048, intron 1 of 5)	956.0	NM_023048	65255.0	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	2.29	7.83	3.7	1.35	4.67	3.22	4.22	3.1	3.75
Merged-chr13-117311686-3	chr13	117311182	117312182	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	91109.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	1.14	1.84	0.0	0.67	0.93	2.41	2.11	0.88	1.25
Merged-chr3-18055588-2	chr3	18055096	18056096	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021560, exon 1 of 1)	exon (NM_021560, exon 1 of 1)	1271.0	NM_021560	59058.0	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	1.14	0.0	1.85	0.0	1.87	7.23	3.17	2.21	3.75
Merged-chr1-193060359-2	chr1	193059879	193060879	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-24604.0	NM_181546	329324.0	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	10.87	9.68	3.7	7.42	2.33	4.82	7.39	6.63	5.62
Merged-chr7-135654652-2	chr7	135654176	135655176	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316681, intron 3 of 17)	B3|SINE|B2	-2362.0	NR_015548	67765.0	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	72.65	87.09	68.45	78.27	71.38	72.34	70.76	84.01	68.07
Merged-chr10-42876366-2	chr10	42875847	42876847	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	15835.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	5.72	2.76	14.8	4.05	0.47	0.0	6.34	2.65	3.75
Merged-chr11-80178455-1	chr11	80177955	80178955	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172133, exon 11 of 11)	3' UTR (NM_172133, exon 11 of 11)	-5417.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	106.97	113.81	76.77	114.7	64.84	111.73	86.61	118.94	71.82
Merged-chr16-14129195-2	chr16	14128696	14129696	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081154, intron 17 of 26)	intron (NM_001081154, intron 17 of 26)	30078.0	NM_001081154	223989.0	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis regulator and mRNA stability 1	protein-coding	12.59	20.74	22.2	26.99	15.86	17.68	16.9	14.59	9.99
Merged-chr10-7816657-1	chr10	7816157	7817157	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026141, intron 12 of 12)	intron (NM_026141, intron 12 of 12)	-15813.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	11.44	16.13	31.45	13.49	7.0	7.23	27.46	9.73	9.37
Merged-chr4-38478757-1	chr4	38478257	38479257	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	376726.0	NR_151606	102636968.0	Mm.136083	NR_151606	ENSMUSG00000085632	Gm12381	-	predicted gene 12381	ncRNA	0.57	2.3	7.4	3.37	4.67	4.82	1.06	1.33	0.0
Merged-chr7-68579917-1	chr7	68579417	68580417	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38539.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	1.72	5.99	1.85	5.4	4.2	1.61	5.28	1.77	0.0
Merged-chr7-111014384-1	chr7	111013884	111014884	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14567.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	8.01	4.61	0.92	6.07	1.87	6.43	5.28	3.54	5.0
Merged-chr1-64573378-1	chr1	64572878	64573878	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037726, intron 4 of 6)	intron (NM_001037726, intron 4 of 6)	40574.0	NM_001037726	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	28.03	35.02	30.52	21.59	26.12	43.4	34.85	53.94	26.85
Merged-chr1-106567661-2	chr1	106567163	106568163	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-21032.0	NR_106164	102466254.0		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	5.72	4.15	0.0	0.67	5.13	3.22	5.28	4.86	5.0
Merged-chr2-22806478-1	chr2	22805978	22806978	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	32151.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	69.79	68.66	52.72	68.15	60.65	94.04	81.33	87.11	51.84
Merged-chr8-125184086-1	chr8	125183586	125184586	+	703.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129891.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.58	4.61	2.77	2.7	6.53	11.25	5.28	3.98	2.5
Merged-chr18-60815353-2	chr18	60814835	60815835	+	703.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011552, intron 22 of 24)	B1_Mur1|SINE|Alu	3259.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	16.59	19.81	24.97	8.1	7.0	9.65	3.17	5.31	8.12
Merged-chr1-173740817-3	chr1	173740319	173741319	+	703.416687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204910, intron 1 of 7)	intron (NM_001204910, intron 1 of 7)	990.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	217.95	281.08	96.2	211.19	200.6	94.04	265.1	277.68	119.91
Merged-chr1-86600011-2	chr1	86599527	86600527	+	703.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360887, intron 5 of 6)	intron (NM_001360887, intron 5 of 6)	17106.0	NM_001360887	26895.0	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	22.31	21.2	27.75	26.99	28.46	19.29	24.29	29.63	17.49
Merged-chr11-97575861-3	chr11	97575363	97576363	+	703.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018873)	promoter-TSS (NM_018873)	-737.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.86	2.3	0.0	1.35	1.4	1.61	4.22	0.88	6.25
Merged-chr7-30842252-2	chr7	30841778	30842778	+	703.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13900.0	NM_001033316	233080.0	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	2.86	3.23	3.7	5.4	0.47	1.61	8.45	3.1	3.75
Merged-chr6-31340143-2	chr6	31339640	31340640	+	703.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58633.0	NR_040300	100503869.0	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	2.29	2.3	3.7	6.07	3.27	3.22	5.28	3.1	3.75
Merged-chr14-74646335-2	chr14	74645835	74646835	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 2 of 2)	intron (NM_172812, intron 2 of 2)	5461.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	1.72	3.23	0.0	8.77	2.8	0.0	4.22	1.77	3.75
Merged-chr17-29499414-2	chr17	29498889	29499889	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8344.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	16.02	5.07	3.7	0.67	1.87	0.0	11.62	2.65	5.0
Merged-chr19-47314515-2	chr19	47314035	47315035	+	703.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 7 of 14)	intron (NM_008018, intron 7 of 14)	-40946.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	24.03	5.99	0.0	11.47	6.53	4.82	1.06	1.33	1.25
Merged-chr9-55307756-1	chr9	55307256	55308256	+	703.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19157.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	32.04	40.55	29.6	51.28	76.97	86.81	39.08	34.93	23.73
Merged-chr1-86046352-1	chr1	86045852	86046852	+	703.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001144992, exon 1 of 3)	exon (NM_001144992, exon 1 of 3)	489.0	NM_001144992	72792.0	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	6.86	1.38	0.0	2.7	0.93	4.82	1.06	2.65	2.5
Merged-chr1-191638930-3	chr1	191638437	191639437	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	63301.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	36.04	29.95	27.75	23.62	23.33	30.54	17.96	14.59	21.86
Merged-chr11-117989578-3	chr11	117989057	117990057	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151726, intron 1 of 9)	PB1D10|SINE|Alu	2700.0	NR_151726	74451.0	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	45.76	41.93	46.25	53.98	31.72	32.96	52.81	38.91	29.98
Merged-chr14-74918723-3	chr14	74918241	74919241	+	703.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	29136.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	102.97	87.09	86.02	82.99	69.04	61.09	121.46	104.35	53.08
Merged-chr6-135175677-2	chr6	135175162	135176162	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7447.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	18.88	17.05	22.2	22.94	28.92	12.86	3.17	2.21	3.75
Merged-chr11-11716824-2	chr11	11716326	11717326	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	26649.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	10.3	6.45	15.72	7.42	7.46	14.47	9.51	8.84	8.12
Merged-chr2-68502412-2	chr2	68501924	68502924	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30443.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.0	1.84	7.4	4.72	7.93	3.22	8.45	4.42	4.37
Merged-chr8-82399190-2	chr8	82398690	82399690	+	703.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254747, intron 1 of 7)	RSINE1|SINE|B4	3396.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	107.55	111.51	110.07	92.44	76.04	90.02	192.23	231.25	125.53
Merged-chr1-61160744-1	chr1	61160244	61161244	+	703.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	182830.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	2.29	4.15	0.0	2.02	4.2	0.0	3.17	1.77	1.87
Merged-chr19-11788026-2	chr19	11787525	11788525	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	17610.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	29.17	34.56	33.3	42.51	22.86	28.13	14.79	13.27	26.23
Merged-chr4-82619742-2	chr4	82619255	82620255	+	703.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111766.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	1.72	2.76	1.85	1.35	1.87	1.61	2.11	2.65	1.25
Merged-chr1-151661142-3	chr1	151660641	151661641	+	703.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	intron (NM_022018, intron 5 of 13)	89768.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	44.05	25.34	16.65	47.23	28.92	19.29	28.52	26.97	22.48
Merged-chr4-133837196-3	chr4	133836700	133837700	+	703.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	37531.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	9.15	4.61	8.32	6.07	1.87	9.65	4.22	2.21	2.5
Merged-chr4-122885184-3	chr4	122884701	122885701	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007598, intron 1 of 12)	intron (NM_007598, intron 1 of 12)	875.0	NM_001358035	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	179.62	252.97	209.96	179.47	180.54	172.81	233.42	237.89	158.01
Merged-chr11-120853723-3	chr11	120853230	120854230	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-29183.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	14.3	11.06	5.55	23.62	9.33	8.04	16.9	7.96	14.36
Merged-chr10-21908173-3	chr10	21907688	21908688	+	703.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 1 of 13)	intron (NM_001161845, intron 1 of 13)	26004.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	34.9	33.18	37.0	39.13	36.85	80.38	69.71	55.71	33.1
Merged-chr13-24416568-3	chr13	24416071	24417071	+	703.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007717, intron 1 of 15)	intron (NM_007717, intron 1 of 15)	1449.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.72	2.3	3.7	2.7	2.33	1.61	3.17	2.65	2.5
Merged-chr10-115323466-2	chr10	115322973	115323973	+	703.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7882.0	NM_024454	216344.0	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	5.72	3.69	8.32	5.4	3.27	1.61	5.28	0.44	11.24
Merged-chr11-54627165-3	chr11	54626658	54627658	+	703.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 11 of 28)	intron (NM_001252494, intron 11 of 28)	31012.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	116.13	186.16	95.27	122.8	101.23	95.65	119.35	183.06	73.69
Merged-chr15-6326163-3	chr15	6325745	6326745	+	703.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	26456.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	2.86	9.22	1.85	12.14	3.27	14.47	11.62	8.4	7.49
Merged-chr11-106082565-2	chr11	106082016	106083016	+	703.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2386.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	14.3	20.27	23.12	31.71	20.53	27.33	22.18	33.16	29.35
Merged-chr6-115380995-2	chr6	115380498	115381498	+	703.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	intron (NM_001308354, intron 1 of 7)	18649.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	62.93	70.5	41.62	64.77	76.04	60.28	96.11	120.27	64.95
Merged-chr2-164456230-1	chr2	164455730	164456730	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-4741.0	NM_025575	66460.0	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	21.74	22.58	14.8	21.59	6.06	22.51	28.52	12.38	11.87
Merged-chr5-28242191-1	chr5	28241691	28242691	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310512, intron 1 of 3)	intron (NM_001310512, intron 1 of 3)	3597.0	NM_001310512	269637.0	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	2.86	5.07	3.7	6.07	2.33	8.84	14.79	16.8	8.12
Merged-chr4-133844386-2	chr4	133843895	133844895	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30336.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	6.86	8.75	7.4	8.1	4.2	3.22	4.22	1.33	2.5
Merged-chrX-53729235-1	chrX	53728735	53729735	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029142, intron 2 of 4)	intron (NM_029142, intron 2 of 4)	4404.0	NM_029142	75013.0	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	4.0	0.46	0.0	1.35	2.33	3.22	1.06	3.54	3.75
Merged-chr8-67986700-1	chr8	67986200	67987200	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12126.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	3.43	2.76	7.4	4.72	0.47	0.0	7.39	0.88	2.5
Merged-chr1-90593038-1	chr1	90592538	90593538	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10387.0	NM_133805	108679.0	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	4.58	2.76	3.7	10.12	3.73	4.82	7.39	1.77	2.5
Merged-chr4-141858333-1	chr4	141857833	141858833	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025994, exon 4 of 4)	3' UTR (NM_025994, exon 4 of 4)	-11974.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	121.28	139.62	91.57	129.55	85.37	79.58	140.47	140.17	71.2
Merged-chr9-33169252-1	chr9	33168752	33169752	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-240286.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	2.29	2.76	0.92	5.4	4.67	7.23	2.11	2.21	1.25
Merged-chr7-88242269-1	chr7	88241769	88242769	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35816.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	50.91	58.52	60.12	54.65	40.12	68.32	61.26	52.18	44.34
Merged-chr8-36019559-1	chr8	36019059	36020059	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75269.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	5.72	2.3	7.4	4.05	9.33	3.22	3.17	0.44	3.75
Merged-chr6-54737902-1	chr6	54737402	54738402	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56278.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	6.29	6.45	18.5	6.75	4.67	12.86	4.22	7.52	5.62
Merged-chr2-52906682-2	chr2	52906209	52907209	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	48841.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	37.76	23.04	19.42	31.04	21.93	20.9	34.85	39.8	9.99
Merged-chr3-129878019-1	chr3	129877519	129878519	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023196)	promoter-TSS (NM_023196)	-587.0	NR_104611	66350.0	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	8.58	14.75	1.85	11.47	18.66	7.23	15.84	4.86	4.37
Merged-chr15-58410541-1	chr15	58410041	58411041	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4927.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	7.44	2.76	0.0	5.4	2.8	0.0	0.0	4.86	0.0
Merged-chr17-51041069-1	chr17	51040569	51041569	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	118309.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.29	5.53	15.72	7.42	7.93	1.61	10.56	6.63	6.25
Merged-chr10-80666640-1	chr10	80666140	80667140	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_021462, exon 14 of 14)	3' UTR (NM_021462, exon 14 of 14)	-9569.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	1.72	1.84	11.1	3.37	2.8	10.45	6.34	3.1	8.12
Merged-chr10-21200546-1	chr10	21200046	21201046	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13602.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	12.01	6.45	3.7	10.12	6.06	5.63	8.45	7.07	6.25
Merged-chr15-44598738-1	chr15	44598238	44599238	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20489.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	1.14	2.76	1.85	0.67	2.33	4.82	1.06	3.54	3.75
Merged-chr12-35051172-2	chr12	35050674	35051674	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	3985.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	69.22	98.15	58.27	85.69	65.31	63.5	113.01	126.46	54.33
Merged-chr2-73004013-1	chr2	73003513	73004513	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23567.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	24.03	17.51	6.47	37.11	33.12	30.54	39.08	47.31	30.6
Merged-chr10-4621206-1	chr10	4620706	4621706	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	9217.0	NM_007956	13982.0	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	5.72	9.68	18.5	8.77	6.53	11.25	6.34	5.75	3.75
Merged-chr8-11476336-1	chr8	11475836	11476836	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	B1_Mus2|SINE|Alu	-1593.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	335.8	306.42	177.59	304.97	278.04	197.73	302.07	303.33	131.15
Merged-chr13-114076123-1	chr13	114075623	114076623	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	MER119|DNA|hAT-Charlie	75469.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	2.86	4.61	3.7	1.35	1.4	0.0	4.22	4.42	3.75
Merged-chr14-25768017-1	chr14	25767517	25768517	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 1 of 3)	intron (NM_001101433, intron 1 of 3)	839.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	27.46	33.64	38.85	42.51	31.72	36.17	31.69	21.67	28.1
Merged-chr12-113155458-1	chr12	113154958	113155958	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134041)	promoter-TSS (NM_134041)	-963.0	NM_134041	104732.0	Mm.87616	NM_134041	ENSMUSG00000037466	Tedc1	4930427A07Rik|AA536649|mFLJ00116	tubulin epsilon and delta complex 1	protein-coding	83.52	77.41	57.35	109.3	80.24	117.35	111.96	98.6	63.7
Merged-chr5-36550427-2	chr5	36549937	36550937	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-19814.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	78.37	114.74	86.02	81.64	82.11	61.89	40.14	42.89	39.97
Merged-chr9-75541792-1	chr9	75541292	75542292	+	703.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357828, intron 1 of 10)	intron (NM_001357828, intron 1 of 10)	17865.0	NM_016963	50875.0	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	8.58	9.22	1.85	15.52	9.8	8.84	21.12	16.8	8.12
Merged-chr17-15810698-1	chr17	15810198	15811198	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	15888.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	4.58	8.29	14.8	5.4	7.93	16.08	23.24	17.24	16.24
Merged-chr9-53634984-1	chr9	53634484	53635484	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_027807, exon 8 of 19)	exon (NM_027807, exon 8 of 19)	-24634.0	NM_144784	110446.0	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	77.23	102.75	89.72	56.68	77.91	69.13	67.6	110.54	56.83
Merged-chr12-98779272-1	chr12	98778772	98779772	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029334, intron 11 of 16)	intron (NM_029334, intron 11 of 16)	8250.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	9.72	8.75	1.85	16.19	3.27	3.22	6.34	7.96	3.75
Merged-chr13-14036401-1	chr13	14035901	14036901	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178337, intron 1 of 16)	L1VL4|LINE|L1	3237.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	12.59	14.28	17.57	10.12	15.86	23.31	9.51	13.27	19.98
Merged-chr15-89180249-1	chr15	89179749	89180749	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	539.0	NM_001284506	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	135.0	133.17	82.32	99.86	73.24	58.68	80.27	76.05	82.44
Merged-chr19-11858148-1	chr19	11857648	11858648	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2197.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	18.88	13.82	14.8	23.62	18.19	28.94	12.67	4.86	3.75
Merged-chr8-10909946-1	chr8	10909446	10910446	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10024.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	21.74	28.11	7.4	18.22	22.86	17.68	9.51	9.29	8.74
Merged-chr11-51636499-1	chr11	51635999	51636999	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025346)	promoter-TSS (NM_025346)	-603.0	NM_025346	66089.0	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	102.97	101.37	65.67	109.98	109.63	51.44	117.24	116.29	41.22
Merged-chr2-113469704-2	chr2	113469219	113470219	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	28655.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.86	0.46	5.55	3.37	4.2	1.61	6.34	3.1	6.25
Merged-chr4-132731773-1	chr4	132731273	132732273	+	703.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_201368, intron 1 of 2)	intron (NM_201368, intron 1 of 2)	773.0	NM_201368	381560.0	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	14.3	8.75	20.35	22.27	16.33	16.08	16.9	22.11	11.87
Merged-chr13-101722854-1	chr13	101722354	101723354	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	intron (NM_001077495, intron 2 of 15)	-30224.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	12.01	18.89	9.25	16.19	10.26	9.65	8.45	8.4	16.24
Merged-chr7-113188038-1	chr7	113187538	113188538	+	703.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-19427.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	13.73	6.91	1.85	9.45	7.46	14.47	5.28	6.63	5.62
Merged-chr4-40236789-3	chr4	40236279	40237279	+	702.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	3046.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	7.44	5.99	13.87	5.4	5.13	9.65	4.22	3.1	9.99
Merged-chr10-81289474-3	chr10	81288926	81289926	+	702.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	1841.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	8.01	5.99	3.7	6.75	0.47	8.84	9.51	0.0	3.75
Merged-chr13-58319411-3	chr13	58318908	58319908	+	702.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175214, intron 10 of 16)	intron (NM_175214, intron 10 of 16)	-6259.0	NR_105788	102465191.0		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	3.43	4.61	3.7	3.37	7.46	4.82	5.28	3.54	3.75
Merged-chr3-97737363-2	chr3	97736846	97737846	+	702.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 24 of 46)	intron (NM_001039376, intron 24 of 46)	30668.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	21.74	24.88	10.17	35.09	26.59	23.31	19.01	19.01	7.49
Merged-chr5-99452129-2	chr5	99451620	99452620	+	702.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-199193.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	5.72	3.69	0.0	2.7	8.4	2.41	1.06	1.77	0.0
Merged-chr6-128837731-3	chr6	128837183	128838183	+	702.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11368.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	26.89	20.27	12.95	18.22	13.06	20.09	15.84	17.69	13.74
Merged-chr5-125368639-5	chr5	125368115	125369115	+	702.883301	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	21402.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	14.87	14.28	20.35	9.45	7.0	14.47	12.67	11.05	8.74
Merged-chr11-95009834-2	chr11	95009338	95010338	+	702.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146025)	promoter-TSS (NM_146025)	-41.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	5.72	1.84	1.85	1.35	2.8	6.43	10.56	3.54	6.25
Merged-chr5-123023357-2	chr5	123022850	123023850	+	702.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	8276.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	30.89	25.8	24.97	27.66	18.66	12.86	20.07	15.92	13.74
Merged-chr8-108393077-2	chr8	108392583	108393583	+	702.849976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	191594.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.86	2.76	3.7	4.05	3.73	8.84	9.51	4.86	6.25
Merged-chr17-33678987-2	chr17	33678494	33679494	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109913, intron 1 of 16)	intron (NM_001109913, intron 1 of 16)	6464.0	NM_001109913	76936.0	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	33.75	22.58	27.75	31.71	14.0	24.92	26.4	38.91	12.49
Merged-chr1-51805294-2	chr1	51804809	51805809	+	702.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010863, intron 7 of 29)	intron (NM_010863, intron 7 of 29)	110669.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	1.72	3.23	1.85	3.37	3.27	0.0	3.17	0.88	5.0
Merged-chr19-41206914-2	chr19	41206391	41207391	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011904)	promoter-TSS (NM_011904)	-117.0	NM_011904	24087.0	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	3.43	2.3	4.62	0.67	4.2	0.0	3.17	0.88	0.0
Merged-chr5-17839357-2	chr5	17838863	17839863	+	702.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	Lx5b|LINE|L1	-3467.0	NM_007643	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	74.94	63.13	35.15	63.42	68.58	35.37	62.31	72.96	40.59
Merged-chr7-92879725-2	chr7	92879223	92880223	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	B1F2|SINE|Alu	4470.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	91.53	109.67	67.52	71.52	79.77	101.28	94.0	81.36	79.32
Merged-chr15-25562305-2	chr15	25561774	25562774	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60276.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	41.19	36.4	37.0	4.72	6.53	4.82	3.17	4.42	6.25
Merged-chr11-101627167-2	chr11	101626672	101627672	+	702.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025654)	promoter-TSS (NM_025654)	-777.0	NM_025654	66599.0	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	46.91	42.85	62.9	59.38	47.12	68.32	79.21	70.75	42.47
Merged-chr18-35467764-3	chr18	35467284	35468284	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	intron (NM_030749, intron 1 of 9)	2168.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	10.87	11.98	5.55	12.14	7.0	15.27	8.45	3.54	8.74
Merged-chrX-163848991-3	chrX	163848503	163849503	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60014.0	NM_001290378	108012.0	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	9.72	9.22	11.1	9.45	7.46	6.43	15.84	13.27	11.24
Merged-chr17-10317375-3	chr17	10316885	10317885	+	702.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	1976.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	46.34	85.71	65.67	68.15	56.45	49.03	72.88	86.66	38.1
Merged-chrX-57326393-6	chrX	57325876	57326876	+	702.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001358573, exon 1 of 21)	5' UTR (NM_001358573, exon 1 of 21)	225.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	55.49	49.76	28.67	41.83	38.72	40.99	40.14	45.1	23.73
Merged-chrX-74353629-3	chrX	74353118	74354118	+	702.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025410)	promoter-TSS (NM_025410)	0.0	NM_025410	66192.0	Mm.21705	NM_025410	ENSMUSG00000015289	Lage3	1110049G11Rik|Eso3|Itba2	L antigen family, member 3	protein-coding	6.29	5.99	21.27	11.47	6.06	11.25	9.51	6.19	3.75
Merged-chr8-116264634-2	chr8	116264145	116265145	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-240370.0	NM_029297	75465.0	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	4.0	9.22	12.95	8.1	9.33	20.9	25.35	9.29	14.99
Merged-chr2-38481952-2	chr2	38481460	38482460	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Arthur1C|DNA|hAT-Tip100	-29737.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	61.21	70.5	46.25	76.92	37.32	70.73	61.26	61.9	50.59
Merged-chr3-52242690-2	chr3	52242173	52243173	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	-25664.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.29	0.92	0.0	3.37	0.93	0.8	2.11	1.77	4.37
Merged-chr5-114747679-2	chr5	114747186	114748186	+	702.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077359, intron 13 of 18)	intron (NM_001077359, intron 13 of 18)	25805.0	NM_019834	26431.0	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	5.72	5.99	9.25	4.72	4.2	11.25	11.62	3.1	1.25
Merged-chr18-67825459-3	chr18	67824944	67825944	+	702.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027556, intron 14 of 45)	MIRb|SINE|MIR	25337.0	NM_027556	70799.0	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	16.02	18.43	9.25	9.45	11.2	15.27	22.18	33.16	25.61
Merged-chr6-116725467-3	chr6	116724964	116725964	+	702.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8706.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	28.6	25.8	17.57	31.04	20.99	28.13	27.46	23.88	23.11
Merged-chr8-104344199-4	chr8	104343676	104344676	+	702.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024217, intron 2 of 4)	intron (NM_024217, intron 2 of 4)	3582.0	NM_024217	68119.0	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	26.89	23.04	30.52	16.87	10.26	35.37	17.96	7.96	12.49
Merged-chr17-28515949-1	chr17	28515449	28516449	+	702.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14912.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	10.87	11.98	11.1	19.57	9.33	24.11	8.45	4.86	19.36
Merged-chr7-66080334-3	chr7	66079846	66080846	+	702.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024439, exon 2 of 6)	exon (NM_024439, exon 2 of 6)	697.0	NM_024439	109815.0	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	121.85	136.39	83.25	112.68	146.48	92.44	143.64	140.61	79.94
Merged-chr9-106156604-1	chr9	106156104	106157104	+	702.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039586, intron 3 of 4)	intron (NM_001039586, intron 3 of 4)	1534.0	NM_001039586	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	4.0	2.3	0.0	2.7	0.0	2.41	0.0	3.54	5.0
Merged-chr3-104994034-2	chr3	104993531	104994531	+	702.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32322.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	44.62	23.5	38.85	39.81	28.46	32.96	31.69	22.55	15.61
Merged-chr17-47598184-2	chr17	47597677	47598677	+	702.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 6 of 6)	AT_rich|Low_complexity|Low_complexity	4710.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	9.15	7.37	15.72	8.77	4.67	15.27	9.51	9.73	3.12
Merged-chr6-82715835-2	chr6	82715339	82716339	+	702.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58615.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.15	5.53	0.92	4.05	4.67	6.43	9.51	3.1	8.12
Merged-chr7-31000806-2	chr7	31000293	31001293	+	702.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18872.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	4.58	2.3	3.7	4.05	5.13	8.04	11.62	2.65	2.5
Merged-chr3-35933566-3	chr3	35933078	35934078	+	702.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205361)	promoter-TSS (NM_001205361)	-612.0	NM_001205361	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	36.04	36.4	51.8	44.53	47.58	46.62	36.97	38.47	17.49
Merged-chr2-13415652-2	chr2	13415153	13416153	+	702.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	intron (NM_001081084, intron 27 of 66)	76223.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	8.01	7.83	7.4	9.45	7.93	7.23	5.28	7.07	12.49
Merged-chr8-95833793-3	chr8	95833282	95834282	+	702.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19709.0	NM_172758	234595.0	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	3.43	7.83	3.7	5.4	1.87	7.23	2.11	3.1	5.0
Merged-chr1-175936620-3	chr1	175936109	175937109	+	702.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16280.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	3.43	2.3	3.7	2.02	0.47	1.61	1.06	0.44	8.12
Merged-chr6-129615977-3	chr6	129615482	129616482	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083322, intron 5 of 7)	intron (NM_001083322, intron 5 of 7)	6701.0	NM_033078	27007.0	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	32.04	38.25	20.35	37.78	24.26	28.13	28.52	30.07	29.98
Merged-chr1-74702457-2	chr1	74701960	74702960	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-11075.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	18.31	9.68	22.2	12.14	15.86	13.66	26.4	17.24	8.12
Merged-chr15-96288614-1	chr15	96288114	96289114	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175251, intron 2 of 20)	intron (NM_175251, intron 2 of 20)	1092.0	NM_175251	77044.0	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	40.04	48.84	69.37	39.81	47.12	39.39	54.92	44.66	38.72
Merged-chr4-105245839-3	chr4	105245374	105246374	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88527.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	6.86	10.14	1.85	17.54	22.39	1.61	22.18	18.13	7.49
Merged-chr19-12464855-2	chr19	12464362	12465362	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010821, exon 2 of 2)	3' UTR (NM_010821, exon 2 of 2)	4083.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	256.28	370.01	142.44	261.79	304.16	242.74	251.37	290.06	127.4
Merged-chr11-62538810-2	chr11	62538312	62539312	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028448, intron 1 of 4)	CpG	449.0	NM_028448	73139.0	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	97.25	54.37	50.87	92.44	51.78	51.44	85.55	41.12	31.23
Merged-chr2-157399860-1	chr2	157399360	157400360	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-24433.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	16.02	15.67	19.42	10.12	12.13	14.47	16.9	5.31	9.99
Merged-chr2-27760448-1	chr2	27759948	27760948	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011305, exon 10 of 10)	3' UTR (NM_011305, exon 10 of 10)	49865.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	45.76	52.53	59.2	53.3	34.99	48.23	36.97	37.14	51.21
Merged-chr8-123021961-1	chr8	123021461	123022461	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	20323.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	16.02	17.51	14.8	22.94	11.66	24.92	23.24	14.15	11.87
Merged-chr1-37638774-3	chr1	37638263	37639263	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028096, intron 2 of 9)	intron (NM_028096, intron 2 of 9)	81048.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	20.59	25.8	24.05	67.47	70.91	46.62	33.8	30.51	18.11
Merged-chr2-125282528-2	chr2	125282023	125283023	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35008.0	NM_023595	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	5.72	5.07	9.25	12.14	14.0	11.25	5.28	4.86	5.0
Merged-chr15-83465251-2	chr15	83464735	83465735	+	702.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159509)	promoter-TSS (NM_001159509)	-629.0	NM_001358643	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	18.88	17.05	14.8	22.27	11.66	20.9	13.73	15.48	19.98
Merged-chr6-91510417-2	chr6	91509922	91510922	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009531, intron 2 of 15)	intron (NM_009531, intron 2 of 15)	5466.0	NM_009531	22591.0	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	2.86	9.68	12.02	8.1	4.67	3.22	11.62	12.38	10.62
Merged-chr17-84698909-1	chr17	84698409	84699409	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_104382, exon 13 of 14)	non-coding (NR_104382, exon 13 of 14)	15788.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	1.72	2.76	3.7	2.02	2.8	2.41	1.06	2.21	3.12
Merged-chr12-28589568-1	chr12	28589068	28590068	+	702.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7085.0	NM_053156	94041.0	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	4.58	0.46	0.0	2.7	1.87	3.22	2.11	1.77	0.0
Merged-chr6-49236508-2	chr6	49236008	49237008	+	702.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-21554.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	34.32	32.72	9.25	19.57	12.6	3.22	8.45	7.96	2.5
Merged-chr1-59584898-2	chr1	59584410	59585410	+	702.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	60616.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	1.14	1.38	4.62	8.1	1.87	8.04	5.28	3.1	5.0
Merged-chr19-47168342-3	chr19	47167847	47168847	+	702.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10473.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	9.72	3.69	0.0	6.07	2.33	9.65	14.79	13.27	3.75
Merged-chr7-12903837-2	chr7	12903314	12904314	+	702.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001447, exon 2 of 3)	exon (NM_001001447, exon 2 of 3)	6005.0	NM_001290441	232878.0	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	10.87	11.52	5.55	11.47	7.93	12.86	4.22	4.86	11.24
Merged-chr11-117792577-5	chr11	117792056	117793056	+	702.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001195088, exon 16 of 16)	exon (NM_001195088, exon 16 of 16)	-5104.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	33.75	24.42	24.05	26.31	17.73	25.72	28.52	21.22	18.74
Merged-chr1-21086413-2	chr1	21085894	21086894	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7169.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	2.29	5.07	3.7	2.02	2.8	2.41	1.06	2.21	1.25
Merged-chr7-81162566-2	chr7	81162072	81163072	+	702.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 12 of 17)	intron (NM_001004184, intron 12 of 17)	47773.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	2.86	1.84	1.85	6.07	0.47	4.02	7.39	2.21	1.25
Merged-chr1-167268709-2	chr1	167268214	167269214	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	16413.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	14.87	10.14	7.4	4.72	7.93	3.22	6.34	7.52	3.75
Merged-chr7-64210795-2	chr7	64210289	64211289	+	702.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 9 of 26)	intron (NM_001039104, intron 9 of 26)	4983.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	5.15	3.23	4.62	4.72	3.27	6.43	2.11	3.1	1.25
Merged-chr3-123515787-3	chr3	123515283	123516283	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7447.0	NR_028574	69895.0	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	4.58	2.3	2.77	1.35	2.8	0.8	11.62	2.65	3.12
Merged-chr2-24950210-3	chr2	24949717	24950717	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_147179)	promoter-TSS (NM_147179)	59.0	NM_147179	67187.0	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	49.2	23.5	22.2	58.03	31.26	20.9	42.25	24.32	16.86
Merged-chr8-70543263-1	chr8	70542763	70543763	+	702.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	3588.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	88.1	117.96	81.4	102.56	84.9	132.63	70.76	60.58	57.46
Merged-chr2-73459924-3	chr2	73459453	73460453	+	702.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	-6064.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	25.74	35.94	69.37	35.76	11.2	30.54	44.36	32.28	22.48
Merged-chr15-97338033-1	chr15	97337533	97338533	+	702.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	RMER17C|LTR|ERVK	-90746.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	4.0	2.3	12.02	5.4	0.47	1.61	1.06	2.65	4.37
Merged-chr6-54934494-1	chr6	54933994	54934994	+	702.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	37167.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	28.03	32.72	15.72	32.39	28.92	58.68	33.8	44.22	43.09
Merged-chr1-151625903-3	chr1	151625401	151626401	+	702.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	L1MD|LINE|L1	54528.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	44.05	48.84	33.3	58.03	46.65	44.21	42.25	46.87	37.47
Merged-chr1-94681007-2	chr1	94680502	94681502	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-116440.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.58	3.69	3.7	2.7	3.27	5.63	2.11	4.86	3.75
Merged-chr9-61277781-2	chr9	61277264	61278264	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045334, intron 3 of 4)	intron (NR_045334, intron 3 of 4)	16045.0	NR_045334	622037.0	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	6.29	3.69	0.0	8.1	2.33	0.0	1.06	3.1	1.25
Merged-chr3-149072811-1	chr3	149072311	149073311	+	702.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-118176.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.58	5.53	1.85	5.4	4.2	3.22	5.28	3.1	5.0
Merged-chr8-36936550-3	chr8	36936067	36937067	+	702.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	15875.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	20.59	30.87	14.8	20.24	13.53	21.7	21.12	25.65	19.36
Merged-chr4-134919840-3	chr4	134919338	134920338	+	702.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3787.0	NM_023665	27981.0	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	83.52	94.92	60.12	86.36	58.78	90.83	100.34	143.26	96.18
Merged-chr15-55356194-2	chr15	55355706	55356706	+	702.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181277, intron 5 of 47)	intron (NM_181277, intron 5 of 47)	48456.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	2.29	1.38	8.32	4.72	4.67	1.61	5.28	1.77	2.5
Merged-chr14-69088678-1	chr14	69088178	69089178	+	702.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59389.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	66.93	87.09	52.72	45.88	52.72	58.68	36.97	53.5	32.48
Merged-chr2-167950379-3	chr2	167949879	167950879	+	702.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	18052.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	111.55	126.25	85.1	137.64	165.61	147.09	77.1	107.45	50.59
Merged-chr9-109055577-2	chr9	109055047	109056047	+	702.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	681.0	NM_026381	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	157.31	161.74	170.19	133.59	102.17	133.43	183.78	237.0	129.9
Merged-chr13-23521925-2	chr13	23521430	23522430	+	702.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Ser-AGY|tRNA|tRNA	-9114.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	5.72	3.23	3.7	4.05	4.2	8.04	6.34	4.86	2.5
Merged-chr11-53748196-2	chr11	53747698	53748698	+	702.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15456.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	21.17	11.06	23.12	24.96	14.46	16.08	29.57	30.95	8.74
Merged-chr2-25580763-2	chr2	25580237	25581237	+	702.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001005424)	promoter-TSS (NM_001005424)	-638.0	NM_001005424	381353.0	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	Ajm1	predicted gene 996	protein-coding	3.43	2.76	3.7	8.77	4.2	12.06	8.45	2.21	1.87
Merged-chr13-109262628-3	chr13	109262114	109263114	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	UCON26|Unknown|Unknown	-62130.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	32.04	17.51	11.1	29.69	15.39	22.51	21.12	28.3	5.0
Merged-chr14-122019388-3	chr14	122018898	122019898	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 8 of 8)	intron (NM_026861, intron 8 of 8)	-15276.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.29	8.75	2.77	2.7	2.8	3.22	3.17	3.98	6.25
Merged-chr4-42877071-3	chr4	42876567	42877567	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2833.0	NM_177785	277773.0	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	3.43	1.38	1.85	2.02	1.4	1.61	2.11	0.44	5.0
Merged-chr2-62654728-3	chr2	62654226	62655226	+	702.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8471.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	11.44	4.15	9.25	5.4	6.53	4.82	7.39	2.21	2.5
Merged-chr5-92245682-2	chr5	92245189	92246189	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011148, intron 7 of 16)	intron (NM_011148, intron 7 of 16)	10589.0	NM_011148	19023.0	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	5.15	1.84	0.0	7.42	6.06	5.63	6.34	1.77	3.75
Merged-chr3-146343834-1	chr3	146343334	146344334	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35110.0	NR_033542	100038607.0	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	-	predicted gene 10636	ncRNA	1.14	1.84	3.7	1.35	2.8	3.22	2.11	2.65	3.12
Merged-chr5-21355164-2	chr5	21354664	21355664	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	-17509.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	29.75	27.65	51.8	17.54	17.73	25.72	26.4	33.6	23.11
Merged-chr8-91357699-2	chr8	91357194	91358194	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	44169.0	NM_011936	26383.0	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	1.14	4.61	5.55	8.1	5.13	0.8	5.28	3.1	3.75
Merged-chr14-30869456-1	chr14	30868956	30869956	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-9801.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	14.3	11.98	20.35	18.22	7.46	12.86	8.45	3.98	4.37
Merged-chr13-28419069-1	chr13	28418569	28419569	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	276585.0	NM_023746	28078.0	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	4.0	5.07	2.77	13.49	4.2	3.22	3.17	5.31	0.62
Merged-chr12-10438222-1	chr12	10437722	10438722	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8166.0	NR_110487	328061.0	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	3.43	1.84	0.0	2.02	2.33	3.22	1.06	0.88	0.0
Merged-chr3-108883735-2	chr3	108883230	108884230	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	6278.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	14.3	17.51	30.52	14.17	9.33	25.72	16.9	13.27	11.87
Merged-chr12-69411044-1	chr12	69410544	69411544	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38894.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	5.72	1.84	5.55	6.07	4.67	3.22	6.34	0.0	1.87
Merged-chr8-108596195-1	chr8	108595695	108596695	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11518.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.29	5.99	1.85	10.8	22.39	4.02	6.34	6.63	5.62
Merged-chr19-10456914-2	chr19	10456442	10457442	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001111140, exon 1 of 1)	exon (NM_001111140, exon 1 of 1)	505.0	NM_001111140	278795.0	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	5.15	0.0	3.7	10.12	0.93	3.22	4.22	0.0	3.75
Merged-chr13-45966346-1	chr13	45965846	45966846	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1355.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	75.51	53.91	30.52	76.92	53.65	33.76	74.99	38.91	26.85
Merged-chr1-166342770-1	chr1	166342270	166343270	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36397.0	NM_030245	27878.0	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	2.86	5.07	4.62	2.02	3.27	8.84	4.22	3.1	6.25
Merged-chr15-71917871-1	chr15	71917371	71918371	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027174, intron 23 of 63)	intron (NM_027174, intron 23 of 63)	116356.0	NM_027174	69700.0	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	3.43	2.76	5.55	2.02	0.47	1.61	3.17	3.1	2.5
Merged-chr4-101253059-1	chr4	101252559	101253559	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146145, intron 1 of 24)	intron (NM_146145, intron 1 of 24)	12223.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	32.04	33.18	40.7	38.46	26.12	28.13	32.74	23.43	31.23
Merged-chr10-117805330-1	chr10	117804830	117805830	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12625.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	9.15	5.99	12.95	3.37	3.27	11.25	5.28	0.44	6.87
Merged-chr12-116141435-1	chr12	116140935	116141935	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009511, intron 10 of 12)	MTC|LTR|ERVL-MaLR	63709.0	NM_009511	22355.0	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.0	1.84	3.7	3.37	2.8	3.22	3.17	3.1	2.5
Merged-chr13-75709325-2	chr13	75708825	75709825	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	1841.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	3.43	6.45	9.25	7.42	6.06	4.82	10.56	5.31	4.37
Merged-chr4-24720985-2	chr4	24720484	24721484	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163020, intron 4 of 10)	intron (NM_001163020, intron 4 of 10)	130140.0	NM_001163020	212390.0	Mm.409581	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	1.72	3.23	0.0	2.7	1.87	3.22	4.22	3.1	2.5
Merged-chr1-191131912-2	chr1	191131413	191132413	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32904.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	29.17	18.89	30.52	19.57	11.66	29.74	14.79	9.73	9.37
Merged-chr12-80855489-1	chr12	80854989	80855989	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 3 of 6)	intron (NM_001242419, intron 3 of 6)	64957.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	24.6	40.09	22.2	39.13	24.72	29.74	41.19	24.76	29.98
Merged-chr5-139725201-1	chr5	139724701	139725701	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	11132.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	26.89	20.27	26.82	33.06	17.26	22.51	49.64	37.58	20.61
Merged-chr10-99417190-1	chr10	99416690	99417690	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153959.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	8.58	15.67	3.7	11.47	6.53	5.63	8.45	6.19	8.12
Merged-chr1-155095339-1	chr1	155094839	155095839	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4297.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	20.59	7.83	0.0	12.82	3.73	8.04	12.67	6.63	5.0
Merged-chr6-129153982-1	chr6	129153482	129154482	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-26633.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	2.29	0.46	0.0	0.0	1.87	1.61	1.06	2.21	3.75
Merged-chr12-77791473-1	chr12	77790973	77791973	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	381332.0	NM_001252616	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	11.44	17.51	9.25	10.8	14.46	15.27	13.73	22.55	10.62
Merged-chr4-82918837-2	chr4	82918346	82919346	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154662, intron 28 of 35)	intron (NR_154662, intron 28 of 35)	-33695.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	10.3	2.76	9.25	6.07	3.27	14.47	5.28	3.98	0.0
Merged-chr10-121291850-1	chr10	121291350	121292350	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 8 of 12)	intron (NM_001361015, intron 8 of 12)	19546.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	3.43	0.92	3.7	2.7	0.93	3.22	2.11	0.44	5.0
Merged-chr10-20818715-1	chr10	20818215	20819215	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93637.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	2.86	3.23	5.55	6.07	2.33	6.43	5.28	0.44	3.75
Merged-chr5-92502975-1	chr5	92502475	92503475	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	Arthur1A|DNA|hAT-Tip100	2682.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	68.07	61.28	47.17	56.68	52.72	74.75	55.98	58.81	53.08
Merged-chrX-94625332-1	chrX	94624832	94625832	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10737.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.57	0.92	0.0	0.0	2.8	1.61	2.11	0.44	1.25
Merged-chr19-41322419-1	chr19	41321919	41322919	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 7 of 16)	intron (NM_031376, intron 7 of 16)	-58415.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	78.94	88.47	89.72	74.89	59.71	114.14	90.83	100.37	89.93
Merged-chr3-153973576-1	chr3	153973076	153974076	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081263, exon 1 of 22)	5' UTR (NM_001081263, exon 1 of 22)	140.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.58	0.46	4.62	2.7	0.93	1.61	1.06	2.65	2.5
Merged-chr15-86186776-1	chr15	86186276	86187276	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145475)	promoter-TSS (NM_145475)	-635.0	NM_145475	223753.0	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	74.37	60.36	72.15	53.3	64.84	78.77	31.69	30.95	41.22
Merged-chr6-131316607-1	chr6	131316107	131317107	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2780.0	NM_172891	243659.0	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	2.29	1.84	9.25	4.05	1.87	4.82	2.11	1.33	9.99
Merged-chr12-39200124-1	chr12	39199624	39200624	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	416413.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.57	5.53	1.85	0.0	2.33	3.22	1.06	1.33	0.0
Merged-chr13-44418846-2	chr13	44418338	44419338	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20889.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	44.05	45.16	27.75	42.51	29.39	35.37	57.03	53.5	28.73
Merged-chr4-156034942-1	chr4	156034442	156035442	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029264, exon 15 of 15)	exon (NM_029264, exon 15 of 15)	8620.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	4.0	2.3	0.0	4.72	1.87	4.82	3.17	1.33	2.5
Merged-chr6-17726249-1	chr6	17725749	17726749	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-17343.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.58	7.83	14.8	3.37	9.8	8.84	5.28	7.96	7.49
Merged-chr18-61419837-2	chr18	61419317	61420317	+	702.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-19386.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	12.01	11.06	29.6	13.49	14.93	16.08	17.96	16.36	12.49
Merged-chr2-166483856-1	chr2	166483356	166484356	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	36405.0	NR_015558	319684.0	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	8.01	6.91	0.92	8.1	6.06	6.43	6.34	9.73	2.5
Merged-chr1-37492548-1	chr1	37492048	37493048	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-3943.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	279.73	214.73	125.79	230.75	167.01	147.9	186.94	186.15	124.91
Merged-chr8-75092843-2	chr8	75092350	75093350	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010442)	promoter-TSS (NM_010442)	-768.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	98.97	132.25	74.0	112.68	132.95	85.2	103.51	134.42	73.69
Merged-chr5-101970156-1	chr5	101969656	101970656	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 4 of 66)	intron (NM_172882, intron 4 of 66)	99765.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	34.32	30.87	59.2	26.99	25.19	33.76	40.14	39.8	37.47
Merged-chr13-5867301-1	chr13	5866801	5867801	+	702.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011803, exon 4 of 4)	3' UTR (NM_011803, exon 4 of 4)	5812.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	24.6	35.48	35.15	18.22	11.66	40.19	22.18	18.13	17.49
Merged-chr10-23815300-1	chr10	23814800	23815800	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	18314.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	4.58	2.3	3.7	3.37	1.87	3.22	1.06	1.33	3.75
Merged-chr6-72116905-1	chr6	72116405	72117405	+	702.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	C-rich|Low_complexity|Low_complexity	6035.0	NR_045163	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	27.46	35.48	30.52	27.66	26.59	28.13	44.36	59.25	47.46
Merged-chr4-62275017-3	chr4	62274495	62275495	+	701.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11434.0	NM_025286	20530.0	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	14.3	18.89	25.9	14.84	14.93	27.33	53.87	38.03	18.74
Merged-chr7-99965367-3	chr7	99964960	99965960	+	701.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	14998.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	103.54	105.06	98.05	103.91	83.97	100.47	57.03	49.52	57.46
Merged-chr13-54072684-2	chr13	54072192	54073192	+	701.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027324, intron 1 of 10)	intron (NM_027324, intron 1 of 10)	847.0	NM_027324	14057.0	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	48.62	37.32	22.2	41.16	35.45	14.47	96.11	87.55	24.98
Merged-chr8-85007901-3	chr8	85007429	85008429	+	701.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_052011, exon 10 of 10)	non-coding (NR_052011, exon 10 of 10)	6479.0	NM_001130194	212989.0	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	2.29	1.84	3.7	3.37	0.93	0.8	2.11	0.88	3.75
Merged-chr2-156421676-2	chr2	156421186	156422186	+	701.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013510, intron 1 of 21)	intron (NM_013510, intron 1 of 21)	777.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	21.17	10.14	1.85	17.54	11.2	28.13	25.35	18.13	4.37
Merged-chr17-73096698-2	chr17	73096191	73097191	+	701.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11294.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	8.58	1.84	5.55	6.07	3.73	3.22	8.45	8.4	3.75
Merged-chr2-5966199-2	chr2	5965702	5966702	+	701.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081132, intron 3 of 21)	intron (NM_001081132, intron 3 of 21)	14733.0	NM_001081132	326622.0	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	6.29	6.91	12.95	6.75	5.6	4.82	10.56	10.61	2.5
Merged-chr12-54448401-2	chr12	54447901	54448901	+	701.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57083.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	7.44	4.15	7.4	6.07	3.27	4.82	7.39	2.65	3.75
Merged-chr7-75786221-3	chr7	75785759	75786759	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62079.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	32.04	41.47	31.45	32.39	27.99	49.83	28.52	35.37	29.98
Merged-chr11-107468314-3	chr11	107467792	107468792	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	2428.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	114.41	109.21	101.74	146.41	118.49	127.8	198.56	185.71	86.18
Merged-chr19-60895566-3	chr19	60895051	60896051	+	701.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	5802.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	42.33	75.11	79.55	46.56	46.18	69.13	48.58	64.56	67.45
Merged-chr9-106370029-1	chr9	106369529	106370529	+	701.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 1 of 2)	intron (NM_153459, intron 1 of 2)	1397.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	30.89	47.0	28.67	30.36	36.85	35.37	59.15	56.16	32.48
Merged-chr14-61328130-1	chr14	61327630	61328630	+	701.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18377.0	NM_177337	219144.0	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	4.58	1.38	9.25	8.77	3.73	3.22	3.17	3.54	5.0
Merged-chr11-68707204-3	chr11	68706692	68707692	+	701.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175260, intron 2 of 40)	Charlie1a|DNA|hAT-Charlie	15277.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	74.94	122.11	46.25	145.06	198.73	173.62	144.7	168.02	54.96
Merged-chr13-113381931-3	chr13	113381424	113382424	+	701.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120920.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	13.16	3.23	10.17	10.12	11.2	8.04	15.84	7.52	8.74
Merged-chrX-155249435-2	chrX	155248931	155249931	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13012.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	62.35	55.29	55.5	57.35	55.51	53.85	60.2	81.8	44.97
Merged-chr5-118614752-1	chr5	118614252	118615252	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	54033.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	4.0	4.61	2.77	6.75	2.33	13.66	2.11	2.21	3.75
Merged-chr13-111824374-2	chr13	111823870	111824870	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-15377.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.58	1.84	0.0	2.7	12.13	8.84	4.22	4.86	5.62
Merged-chr10-80880496-2	chr10	80879955	80880955	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081688, intron 1 of 17)	intron (NM_001081688, intron 1 of 17)	639.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	3.43	3.23	1.85	4.72	0.47	3.22	0.0	1.33	1.87
Merged-chr5-123125797-1	chr5	123125297	123126297	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	6832.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	8.01	3.69	0.0	12.82	3.27	1.61	5.28	1.77	3.75
Merged-chr5-21326685-1	chr5	21326185	21327185	+	701.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-45988.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	9.72	7.37	9.25	5.4	2.33	4.82	4.22	3.98	0.62
Merged-chr15-67101520-3	chr15	67101017	67102017	+	701.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75365.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.86	3.23	4.62	7.42	0.93	4.82	1.06	1.33	3.75
Merged-chr3-30515157-1	chr3	30514657	30515657	+	701.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5482.0	NM_021442	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	1.14	1.38	3.7	1.35	0.47	1.61	3.17	1.77	3.75
Merged-chr11-44544217-2	chr11	44543716	44544716	+	701.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	RSINE1|SINE|B4	24839.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	26.89	23.5	39.77	31.71	20.99	28.13	34.85	33.16	28.1
Merged-chr11-48859243-2	chr11	48858750	48859750	+	701.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12170.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	9.15	6.45	15.72	10.8	4.2	8.84	4.22	4.42	5.62
Merged-chr4-136511813-2	chr4	136511304	136512304	+	701.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	intron (NM_024452, intron 1 of 4)	42043.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	24.6	15.67	12.95	22.94	26.12	29.74	23.24	20.34	28.1
Merged-chr14-62466507-3	chr14	62466000	62467000	+	701.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10211.0	NM_172810	239134.0	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	6.29	3.69	0.0	5.4	5.13	0.0	1.06	1.33	2.5
Merged-chr8-69938494-2	chr8	69937984	69938984	+	701.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 2 of 12)	intron (NM_001286450, intron 2 of 12)	35899.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	24.6	20.74	21.27	18.22	22.86	16.08	24.29	7.07	6.87
Merged-chr8-70617766-3	chr8	70617303	70618303	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153074, exon 2 of 3)	exon (NM_153074, exon 2 of 3)	959.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	294.04	403.65	258.06	213.89	278.97	177.64	347.48	392.2	197.98
Merged-chr2-158161833-3	chr2	158161324	158162324	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15432.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	21.74	23.96	56.42	20.24	21.46	40.99	43.3	30.51	30.6
Merged-chr10-81494844-3	chr10	81494337	81495337	+	701.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	1526.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	3.43	4.15	7.4	6.07	3.73	4.82	6.34	3.98	1.25
Merged-chr11-31900688-3	chr11	31900150	31901150	+	701.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	29710.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	14.87	25.34	28.67	11.47	18.19	12.86	33.8	23.43	19.98
Merged-chr17-79661609-3	chr17	79661148	79662148	+	701.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	46748.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	15.45	15.21	15.72	26.31	17.26	10.45	17.96	21.67	9.37
Merged-chr14-51266302-3	chr14	51265804	51266804	+	701.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10192.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	2.86	1.84	2.77	2.02	3.27	3.22	2.11	2.65	1.25
Merged-chr2-122454185-3	chr2	122453698	122454698	+	701.516663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356532, intron 10 of 17)	intron (NM_001356532, intron 10 of 17)	13378.0	NM_001356532	269346.0	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2|SPNT	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	15.45	16.13	9.25	12.14	16.33	15.27	25.35	21.22	23.11
Merged-chr7-81116539-1	chr7	81116039	81117039	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001004184, exon 3 of 18)	exon (NM_001004184, exon 3 of 18)	1740.0	NM_001004184	434203.0	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	20.59	1.84	52.72	1.35	1.4	0.0	1.06	0.0	0.0
Merged-chr15-99415946-2	chr15	99415457	99416457	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	22738.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	8.01	5.07	3.7	8.77	1.87	8.84	11.62	9.73	3.12
Merged-chr2-125660176-1	chr2	125659676	125660676	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 6 of 11)	intron (NM_199022, intron 6 of 11)	-12924.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	5.72	3.69	0.0	2.02	2.8	4.82	0.0	1.77	1.25
Merged-chr1-84183015-1	chr1	84182515	84183515	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	35946.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	3.43	4.61	8.32	11.47	7.93	14.47	0.0	1.77	1.87
Merged-chr2-4557238-3	chr2	4556752	4557752	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 11 of 23)	intron (NM_001177843, intron 11 of 23)	-2502.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	24.6	31.33	41.62	24.96	18.66	33.76	51.75	26.09	35.6
Merged-chr11-83686466-2	chr11	83685967	83686967	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17589.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	0.0	0.46	0.0	19.57	10.26	32.15	34.85	34.05	38.1
Merged-chr15-64279412-2	chr15	64278919	64279919	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	33254.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	26.89	61.75	40.7	37.78	37.32	22.51	40.14	42.45	33.1
Merged-chr7-49001705-1	chr7	49001205	49002205	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	42632.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	20.02	12.44	18.5	31.04	24.72	15.27	30.63	20.78	21.23
Merged-chr7-142399042-3	chr7	142398546	142399546	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-11176.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	262.0	259.88	288.59	192.29	157.68	212.2	276.72	344.45	156.76
Merged-chr14-29980670-2	chr14	29980165	29981165	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027493, intron 1 of 12)	intron (NM_027493, intron 1 of 12)	2328.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	4.0	3.69	1.85	8.77	3.27	2.41	3.17	5.31	4.37
Merged-chr5-5266676-2	chr5	5266178	5267178	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310448)	promoter-TSS (NM_001310448)	-610.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	4.0	4.15	3.7	1.35	1.4	5.63	1.06	3.1	5.0
Merged-chr9-71806655-2	chr9	71806198	71807198	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-35096.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	8.58	2.3	0.0	4.72	1.87	3.22	8.45	3.98	6.25
Merged-chr15-74687408-3	chr15	74686923	74687923	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14853.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	9.15	4.61	8.32	5.4	6.06	3.22	2.11	1.77	5.0
Merged-chr14-25636349-1	chr14	25635849	25636849	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183208, intron 7 of 23)	intron (NM_183208, intron 7 of 23)	32836.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	9.72	5.99	5.55	2.7	3.27	8.04	5.28	3.98	3.12
Merged-chr11-121475823-2	chr11	121475310	121476310	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029878, intron 7 of 38)	intron (NM_029878, intron 7 of 38)	23861.0	NM_029878	108903.0	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	3.43	5.99	5.55	10.8	1.87	0.8	6.34	3.54	1.87
Merged-chr11-78600235-2	chr11	78599731	78600731	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49496.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	32.04	23.96	31.45	34.41	31.72	36.97	30.63	34.49	23.73
Merged-chr9-7343309-1	chr9	7342809	7343809	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_001320077	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	11.44	7.37	9.25	8.77	7.93	10.45	6.34	8.84	12.49
Merged-chr8-122898179-1	chr8	122897679	122898679	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 7 of 12)	intron (NM_001081379, intron 7 of 12)	49805.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	26.89	29.03	14.8	28.34	27.52	37.78	33.8	19.46	33.72
Merged-chr9-123498061-2	chr9	123497560	123498560	+	701.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013860, intron 1 of 7)	intron (NM_013860, intron 1 of 7)	19359.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	5.15	4.15	0.0	3.37	0.47	7.23	1.06	0.88	1.25
Merged-chr9-102784645-2	chr9	102784136	102785136	+	701.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44988.0	NR_033301	434510.0	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	6.86	4.61	1.85	2.02	0.0	8.84	1.06	0.44	1.25
Merged-chr17-26095445-3	chr17	26094946	26095946	+	701.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019731)	promoter-TSS (NM_019731)	24.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	17.73	5.99	17.57	17.54	12.13	11.25	10.56	11.5	5.62
Merged-chr11-26213873-3	chr11	26213377	26214377	+	701.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-3301.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	6.86	3.69	3.7	2.7	3.73	14.47	1.06	2.65	5.0
Merged-chr5-20860773-2	chr5	20860282	20861282	+	701.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	21342.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	21.17	9.68	10.17	14.84	10.73	13.66	16.9	9.29	6.25
Merged-chr6-120198087-2	chr6	120197592	120198592	+	701.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016718, exon 2 of 4)	exon (NM_016718, exon 2 of 4)	4269.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.15	1.84	1.85	11.47	1.4	6.43	4.22	0.0	3.75
Merged-chr19-32792817-1	chr19	32792317	32793317	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 3 of 8)	intron (NM_008960, intron 3 of 8)	35240.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	13.16	33.18	9.25	22.94	23.79	21.7	20.07	22.11	14.99
Merged-chr13-60177685-1	chr13	60177185	60178185	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008086)	promoter-TSS (NM_008086)	-150.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	5.15	1.84	1.85	2.02	2.8	0.0	5.28	0.44	2.5
Merged-chr6-90463129-3	chr6	90462660	90463660	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355668, intron 1 of 2)	CpG	584.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	141.87	85.71	45.32	91.09	67.64	24.92	82.38	49.52	13.74
Merged-chr15-65744645-1	chr15	65744145	65745145	+	701.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42375.0	NM_133766	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	6.29	11.06	0.0	16.19	30.79	24.92	10.56	7.52	5.62
Merged-chr4-9743262-3	chr4	9742731	9743731	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27354.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	9.72	6.45	3.7	11.47	6.06	4.02	9.51	8.84	5.62
Merged-chr14-30827615-3	chr14	30827108	30828108	+	701.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028839, intron 1 of 7)	intron (NM_028839, intron 1 of 7)	2014.0	NM_028839	69179.0	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	37.18	43.77	35.15	24.29	15.86	28.94	25.35	34.05	36.85
Merged-chr18-46575710-5	chr18	46575081	46576081	+	701.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	66.93	87.09	60.12	58.03	65.31	71.54	61.26	87.55	46.22
Merged-chr7-35580077-2	chr7	35579567	35580567	+	701.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145840, exon 1 of 1)	3' UTR (NM_145840, exon 1 of 1)	5515.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	2.86	1.38	1.85	2.7	0.93	0.8	0.0	1.33	6.25
Merged-chr2-125723785-1	chr2	125723285	125724285	+	701.25	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_199022, exon 1 of 12)	5' UTR (NM_199022, exon 1 of 12)	363.0	NM_199022	271849.0	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	3.43	1.84	0.92	5.4	1.87	3.22	4.22	3.1	3.75
Merged-chr11-60776334-3	chr11	60775826	60776826	+	701.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009410, intron 1 of 18)	intron (NM_009410, intron 1 of 18)	1039.0	NM_009410	21975.0	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	104.69	153.9	128.57	156.53	143.68	177.64	161.6	235.23	159.25
Merged-chr4-12171716-3	chr4	12171157	12172157	+	701.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310743, intron 1 of 7)	CpG	358.0	NM_001310743	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	6.86	4.61	7.4	6.75	1.87	3.22	3.17	1.33	5.0
Merged-chr16-35755923-3	chr16	35755427	35756427	+	701.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	13429.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	48.62	66.35	45.32	29.01	39.19	50.64	77.1	90.2	53.71
Merged-chr4-129678105-2	chr4	129677608	129678608	+	701.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356378, intron 9 of 9)	intron (NM_001356378, intron 9 of 9)	-5341.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	28.6	26.26	14.8	39.81	21.46	44.21	3.17	1.77	0.62
Merged-chr10-59326814-2	chr10	59326325	59327325	+	701.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	3529.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	22.88	45.16	30.52	35.76	26.12	24.11	43.3	40.68	43.72
Merged-chr9-110530806-2	chr9	110530306	110531306	+	701.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1791.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	26.31	35.02	49.95	24.29	14.0	22.51	51.75	50.41	23.11
Merged-chr1-23419143-2	chr1	23418645	23419645	+	701.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35970.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	14.3	11.98	8.32	5.4	4.2	9.65	4.22	3.54	6.87
Merged-chr16-29946120-3	chr16	29945619	29946619	+	701.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	33005.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	171.04	235.0	172.04	183.52	217.39	185.68	234.47	251.59	145.51
Merged-chr6-38531430-3	chr6	38530933	38531933	+	701.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3428.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	17.16	18.43	33.3	8.77	7.0	19.29	12.67	8.84	17.49
Merged-chr11-98002822-2	chr11	98002312	98003312	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001282977, exon 14 of 14)	3' UTR (NM_001282977, exon 14 of 14)	-6639.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	2.29	2.3	0.0	1.35	1.87	3.22	6.34	0.0	0.0
Merged-chr18-36493694-1	chr18	36493194	36494194	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22111.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.29	2.76	1.85	4.72	7.0	4.82	4.22	2.65	9.99
Merged-chr1-120251387-1	chr1	120250887	120251887	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	intron (NM_001085409, intron 2 of 5)	13893.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.15	4.61	15.72	5.4	6.06	10.45	4.22	3.54	9.37
Merged-chr10-83337440-2	chr10	83336934	83337934	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177388, intron 1 of 10)	CpG	383.0	NM_177388	338365.0	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	5.72	1.84	3.7	4.05	5.6	4.82	2.11	1.33	7.49
Merged-chrX-107336813-1	chrX	107336313	107337313	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	52467.0	NM_001177782	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.0	0.46	0.0	2.02	1.87	6.43	2.11	2.21	1.87
Merged-chr4-107777236-1	chr4	107776736	107777736	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25023.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	5.15	3.69	5.55	4.72	7.0	12.06	10.56	0.88	5.0
Merged-chr5-121451868-2	chr5	121451404	121452404	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029912)	promoter-TSS (NM_029912)	570.0	NM_026129	67397.0	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	366.69	446.04	305.23	336.01	363.41	274.09	223.91	349.75	231.7
Merged-chr3-89714536-1	chr3	89714036	89715036	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357958)	promoter-TSS (NM_001357958)	-486.0	NM_001038587	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	10.87	7.83	10.17	10.12	12.13	3.22	16.9	9.29	3.75
Merged-chr18-32370411-1	chr18	32369911	32370911	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045403, intron 2 of 2)	Lx9|LINE|L1	-6806.0	NM_001083334	30948.0	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	11.44	7.37	1.85	9.45	5.13	6.43	5.28	1.33	3.12
Merged-chr16-35919178-1	chr16	35918678	35919678	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19292.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	129.28	169.57	87.87	141.02	118.03	113.33	214.41	210.47	114.91
Merged-chr5-122400275-1	chr5	122399775	122400775	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019824, intron 2 of 6)	intron (NM_019824, intron 2 of 6)	8397.0	NM_019824	56378.0	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	52.06	60.82	76.77	72.19	67.18	105.3	90.83	88.43	46.84
Merged-chr10-39771888-1	chr10	39771388	39772388	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	intron (NM_011264, intron 1 of 31)	39728.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	36.61	54.83	37.92	43.86	45.25	28.13	130.97	96.39	35.6
Merged-chr17-45731439-1	chr17	45730939	45731939	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2405.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.57	0.0	5.55	2.7	1.4	0.0	5.28	0.0	1.87
Merged-chr2-4402137-1	chr2	4401637	4402637	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	1161.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	4.0	1.38	0.92	7.42	3.27	3.22	4.22	2.65	4.37
Merged-chr17-35919492-1	chr17	35918992	35919992	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357740, exon 1 of 19)	5' UTR (NM_001357740, exon 1 of 19)	220.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	114.98	88.01	49.02	107.95	63.91	37.78	70.76	76.94	50.59
Merged-chr18-40459120-1	chr18	40458620	40459620	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026135, intron 1 of 1)	intron (NM_026135, intron 1 of 1)	200759.0	NM_026135	383348.0	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	1.72	5.53	5.55	2.7	3.73	0.8	6.34	3.54	7.49
Merged-chrX-48034762-1	chrX	48034262	48035262	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013912)	promoter-TSS (NM_013912)	91.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.0	1.38	0.0	4.05	0.47	0.0	2.11	0.0	0.0
Merged-chr7-101368494-1	chr7	101367994	101368994	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040111, intron 2 of 33)	L1ME4b|LINE|L1	-9628.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	30.32	31.33	35.15	26.31	29.86	61.89	21.12	21.67	22.48
Merged-chr1-135793890-1	chr1	135793390	135794390	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5531.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	9.15	0.92	1.85	7.42	5.6	4.82	3.17	4.86	4.37
Merged-chr14-52015820-2	chr14	52015274	52016274	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253694, intron 1 of 5)	intron (NM_001253694, intron 1 of 5)	-1091.0	NM_001033805	619301.0	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	40.04	57.14	39.77	39.81	40.59	53.85	45.42	55.27	37.47
Merged-chr5-140806518-2	chr5	140806009	140807009	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	23922.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	43.48	30.41	34.22	43.86	41.52	32.96	14.79	18.57	17.49
Merged-chr2-164526072-1	chr2	164525572	164526572	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44-int|LTR|ERVK	-24458.0	NR_152178	670507.0	Mm.404686	NR_152178		Gm14317	-	predicted gene 14317	ncRNA	9.15	8.29	8.32	16.87	2.8	12.06	2.11	0.88	2.5
Merged-chr19-10971858-1	chr19	10971358	10972358	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023529, intron 1 of 8)	ORR1C2-int|LTR|ERVL-MaLR	2812.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	24.03	20.27	16.65	3.37	1.4	1.61	1.06	3.1	4.37
Merged-chr6-55415584-1	chr6	55415084	55416084	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	18697.0	NR_046179	330324.0	Mm.113703	NR_046179	ENSMUSG00000108228	6430584L05Rik	6430584L05	RIKEN cDNA 6430584L05 gene	ncRNA	8.58	6.91	5.55	2.7	1.4	8.04	3.17	0.88	3.75
Merged-chr4-129830416-2	chr4	129829914	129830914	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	9706.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	147.59	188.92	98.97	141.69	116.63	118.96	245.04	218.43	88.68
Merged-chr5-110979533-5	chr5	110978969	110979969	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	CpG	-24675.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	49.77	40.09	63.82	49.93	30.79	48.23	42.25	16.8	23.73
Merged-chr3-57697300-1	chr3	57696800	57697800	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-4763.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	22.31	12.9	7.4	17.54	13.53	13.66	8.45	9.29	14.36
Merged-chr15-59517034-2	chr15	59516536	59517536	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-131618.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	14.87	19.81	17.57	10.8	7.0	20.9	8.45	10.17	3.75
Merged-chr9-63990082-1	chr9	63989582	63990582	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	31977.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	31.46	17.51	24.05	41.16	28.46	36.97	55.98	38.91	26.85
Merged-chr14-47348847-1	chr14	47348347	47349347	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25013.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	38.9	35.02	17.57	37.11	24.72	50.64	32.74	30.51	18.74
Merged-chr11-29720857-1	chr11	29720357	29721357	+	701.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024226, intron 1 of 6)	intron (NM_024226, intron 1 of 6)	2294.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	21.74	25.8	17.57	16.19	27.99	22.51	43.3	34.49	19.36
Merged-chr13-47152544-2	chr13	47152049	47153049	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	-3879.0	NR_126083	319467.0	Mm.447279	NR_126083	ENSMUSG00000114961	A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	0.57	2.76	0.0	4.05	2.33	0.0	2.11	0.88	1.25
Merged-chr9-111220761-3	chr9	111220281	111221281	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027742, intron 11 of 13)	intron (NM_027742, intron 11 of 13)	50827.0	NM_026810	17350.0	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	8.58	12.9	4.62	7.42	10.26	6.43	5.28	8.4	8.12
Merged-chr15-28188152-1	chr15	28187652	28188652	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15614.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	6.29	4.15	0.0	3.37	1.87	0.0	2.11	3.54	5.0
Merged-chr8-66914315-1	chr8	66913815	66914815	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	54098.0	NM_001163564	234344.0	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.57	1.38	2.77	2.7	1.87	4.02	1.06	0.88	1.25
Merged-chr17-72858387-2	chr17	72857894	72858894	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20346.0	NM_001357371	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	4.0	1.84	0.0	2.02	2.33	4.82	3.17	1.33	3.75
Merged-chr4-134927934-1	chr4	134927434	134928434	+	701.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_023665)	TTS (NM_023665)	-3046.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	40.04	35.94	38.85	19.57	21.93	45.01	21.12	30.51	23.73
Merged-chr4-41738494-2	chr4	41738001	41739001	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	2858.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	10.3	8.75	6.47	7.42	10.26	14.47	22.18	5.75	9.99
Merged-chr18-52909371-2	chr18	52908871	52909871	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199151, intron 11 of 11)	intron (NM_001199151, intron 11 of 11)	141227.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	1.72	1.84	1.85	2.7	1.4	0.0	3.17	0.44	6.25
Merged-chr4-81745676-1	chr4	81745176	81746176	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-258663.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	13.16	15.21	10.17	10.12	14.46	24.92	17.96	5.75	18.74
Merged-chr3-51334196-1	chr3	51333696	51334696	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	6448.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	151.02	205.97	113.77	176.78	245.38	163.17	189.06	264.42	104.92
Merged-chr6-120451666-2	chr6	120451171	120452171	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11526.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	6.86	3.69	3.7	6.75	2.8	12.86	8.45	4.86	7.49
Merged-chr6-142779536-2	chr6	142779042	142780042	+	701.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	22856.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	1.14	2.76	2.77	4.72	3.27	8.84	1.06	2.21	1.25
Merged-chr15-5185598-3	chr15	5185117	5186117	+	700.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026213)	promoter-TSS (NM_026213)	57.0	NM_001355621	67515.0	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	42.33	38.25	51.8	64.1	53.65	63.5	79.21	77.38	50.59
Merged-chr2-153410394-2	chr2	153409922	153410922	+	700.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001134300, exon 11 of 11)	3' UTR (NM_001134300, exon 11 of 11)	34057.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.72	6.45	10.17	5.4	8.86	19.29	6.34	2.21	9.37
Merged-chr9-107566224-3	chr9	107565715	107566715	+	700.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019742)	TTS (NM_019742)	-2948.0	NM_010489	15587.0	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	14.3	13.82	16.65	18.22	8.4	18.49	16.9	7.96	17.49
Merged-chr5-138848269-2	chr5	138847752	138848752	+	700.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28172.0	NM_001195128	384244.0	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	5.15	2.3	7.4	0.67	1.87	0.0	4.22	0.0	1.25
Merged-chr15-36903513-2	chr15	36903024	36904024	+	700.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103878.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	25.17	26.26	7.4	12.82	19.59	17.68	19.01	19.9	11.24
Merged-chr13-37249783-2	chr13	37249277	37250277	+	700.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95568.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.58	7.83	18.5	11.47	9.8	8.04	7.39	10.61	3.75
Merged-chr1-164061424-3	chr1	164060870	164061870	+	700.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011346)	promoter-TSS (NM_011346)	-706.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.29	3.69	5.55	5.4	3.73	7.23	5.28	6.19	6.87
Merged-chr5-137630246-3	chr5	137629711	137630711	+	700.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033148, intron 1 of 21)	intron (NR_033148, intron 1 of 21)	1088.0	NR_033148	100316903.0	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	157.31	169.11	139.67	118.08	95.63	177.64	178.5	230.37	149.26
Merged-chr4-133209551-3	chr4	133209057	133210057	+	700.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008154, exon 2 of 2)	3' UTR (NM_008154, exon 2 of 2)	2979.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	8.01	2.3	1.85	11.47	4.67	1.61	2.11	1.77	2.5
Merged-chr11-88989624-1	chr11	88989124	88990124	+	700.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016706, intron 6 of 6)	intron (NM_016706, intron 6 of 6)	-9779.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	1.72	4.15	0.0	3.37	1.87	1.61	8.45	4.86	3.75
Merged-chr18-56378088-2	chr18	56377579	56378579	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22261.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.58	2.76	2.77	2.7	2.8	1.61	2.11	2.65	0.0
Merged-chr2-78048547-1	chr2	78048047	78049047	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2630.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	4.0	6.45	0.0	4.72	3.27	3.22	5.28	2.21	3.12
Merged-chr7-67369820-2	chr7	67369320	67370320	+	700.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	intron (NM_001357324, intron 1 of 11)	3038.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	32.04	45.62	27.75	29.01	25.19	32.15	45.42	41.56	34.35
Merged-chrX-99216942-3	chrX	99216437	99217437	+	700.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	80876.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	4.0	2.3	0.0	5.4	2.33	2.41	6.34	1.77	4.37
Merged-chr13-33965241-2	chr13	33964716	33965716	+	700.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163239, intron 1 of 5)	intron (NM_001163239, intron 1 of 5)	557.0	NM_001163241	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	38.9	43.77	40.7	43.86	37.32	56.27	72.88	68.54	43.72
Merged-chr9-85577958-3	chr9	85577437	85578437	+	700.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	171397.0	NM_001081282	108837.0	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	20.59	30.87	19.42	28.34	22.86	28.94	24.29	15.48	24.98
Merged-chr17-8233957-2	chr17	8233457	8234457	+	700.708374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2086.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	7.44	5.53	2.77	2.02	6.06	1.61	4.22	3.54	2.5
Merged-chr5-100675111-2	chr5	100674599	100675599	+	700.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027978)	promoter-TSS (NM_027978)	-843.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	10.87	19.35	5.55	12.14	10.73	12.06	10.56	11.05	13.74
Merged-chr19-6908318-3	chr19	6907814	6908814	+	700.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012021, intron 1 of 5)	intron (NM_012021, intron 1 of 5)	-1384.0	NM_001166370	67674.0	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	85.81	105.52	101.74	51.28	57.85	95.65	114.07	122.92	113.04
Merged-chr10-17485100-1	chr10	17484600	17485600	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-238128.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	10.3	13.36	8.32	12.14	11.66	19.29	3.17	9.29	3.75
Merged-chr9-91362223-3	chr9	91361682	91362682	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009573, intron 2 of 2)	intron (NM_009573, intron 2 of 2)	3617.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	2.86	1.38	0.0	2.02	1.4	9.65	0.0	0.44	3.75
Merged-chr5-44223685-1	chr5	44223185	44224185	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	2921.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	8.01	4.15	3.7	4.72	6.53	3.22	5.28	2.21	3.75
Merged-chr10-44453995-1	chr10	44453495	44454495	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007548, intron 2 of 6)	intron (NM_007548, intron 2 of 6)	4753.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.3	11.98	7.4	5.4	7.0	11.25	11.62	12.82	9.99
Merged-chr4-40134926-3	chr4	40134419	40135419	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8346.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.15	2.76	3.7	3.37	4.2	0.8	0.0	1.33	3.75
Merged-chr11-116678312-1	chr11	116677812	116678812	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009180, intron 8 of 8)	intron (NM_009180, intron 8 of 8)	3715.0	NR_028570	100216538.0		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	16.59	14.75	15.72	18.22	11.2	12.86	10.56	9.73	11.24
Merged-chr11-117842252-1	chr11	117841752	117842752	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-6985.0	NM_001012273	11799.0	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	10.87	5.53	12.95	8.1	3.27	12.86	13.73	10.17	3.75
Merged-chr14-76503258-1	chr14	76502758	76503758	+	700.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310647)	promoter-TSS (NM_001310647)	-968.0	NM_001310647	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	8.58	5.53	1.85	4.72	3.27	0.0	5.28	2.21	1.25
Merged-chr12-81746640-3	chr12	81746156	81747156	+	700.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	L1MB8|LINE|L1	34514.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.29	7.37	14.8	10.12	4.2	3.22	5.28	3.1	6.25
Merged-chr12-80154160-2	chr12	80153641	80154641	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21297.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.58	4.15	2.77	4.72	4.67	4.02	3.17	3.98	0.0
Merged-chr4-11031910-2	chr4	11031406	11032406	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24287.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	7.44	10.14	6.47	17.54	10.26	1.61	8.45	2.65	6.25
Merged-chr4-145194231-2	chr4	145193725	145194725	+	700.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276465, intron 1 of 69)	intron (NM_001276465, intron 1 of 69)	780.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	48.05	42.85	36.07	41.83	55.05	49.03	66.54	61.9	21.23
Merged-chr4-133156620-2	chr4	133156068	133157068	+	700.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	L2|LINE|L2	25935.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	80.09	92.62	85.1	80.29	60.65	99.67	134.14	157.41	77.44
Merged-chr3-9829259-3	chr3	9828776	9829776	+	700.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	MIRb|SINE|MIR	4403.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	56.63	49.3	40.7	53.98	47.12	52.25	60.2	93.3	46.84
Merged-chr1-174048449-3	chr1	174047936	174048936	+	700.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1939.0	NM_146716	258711.0	Mm.377648	NM_146716	ENSMUSG00000047048	Olfr432	MOR123-2	olfactory receptor 432	protein-coding	4.0	5.53	0.0	6.75	3.27	4.02	8.45	8.84	6.25
Merged-chr10-81343350-3	chr10	81342826	81343826	+	700.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148951)	promoter-TSS (NM_148951)	-60.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	7.44	4.61	1.85	6.07	3.27	0.0	6.34	2.21	7.49
Merged-chr4-133498588-3	chr4	133498082	133499082	+	700.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081156)	promoter-TSS (NM_001081156)	-32.0	NM_001081156	69539.0	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	2.29	1.84	6.47	5.4	3.27	1.61	0.0	0.0	0.0
Merged-chr6-37722042-1	chr6	37721542	37722542	+	700.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-148769.0	NM_001272064	21848.0	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	6.86	6.91	1.85	4.72	5.13	1.61	22.18	30.51	28.73
Merged-chrX-75622088-1	chrX	75621588	75622588	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-43857.0	NM_175122	67790.0	Mm.45148	NM_175122	ENSMUSG00000031202	Rab39b	6330580M05Rik	RAB39B, member RAS oncogene family	protein-coding	1.72	2.3	0.0	0.67	0.47	4.82	0.0	0.0	3.75
Merged-chr6-122577068-1	chr6	122576568	122577568	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_031159)	TTS (NM_031159)	23259.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	26.31	33.64	23.12	29.01	15.39	29.74	20.07	8.84	18.11
Merged-chrX-19162608-2	chrX	19162111	19163111	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15640.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	49.77	50.69	40.7	43.18	31.26	35.37	31.69	36.26	24.98
Merged-chr7-19283086-1	chr7	19282586	19283586	+	700.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013648, intron 1 of 9)	CpG	462.0	NM_013648	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	8.01	1.84	11.1	6.75	5.13	3.22	8.45	3.54	8.74
Merged-chr12-41186193-1	chr12	41185693	41186693	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	162103.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.57	2.76	7.4	6.75	1.87	3.22	2.11	2.65	8.74
Merged-chr7-31084314-1	chr7	31083814	31084814	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7617.0	NM_008557	17178.0	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	16.02	7.37	0.0	37.11	29.86	17.68	3.17	5.31	6.87
Merged-chr3-87215343-2	chr3	87214824	87215824	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-40577.0	NM_130867	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	32.04	25.8	29.6	39.13	29.39	27.33	69.71	80.92	36.22
Merged-chr6-87534354-1	chr6	87533854	87534854	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1095.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	191.64	197.22	161.87	214.56	165.61	197.73	164.76	241.87	133.02
Merged-chr3-38130297-1	chr3	38129797	38130797	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77822.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	28.03	24.42	11.1	24.29	13.53	21.7	21.12	15.48	26.85
Merged-chr16-95861518-1	chr16	95861018	95862018	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	37195.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	6.86	5.53	1.85	4.05	5.13	4.82	7.39	3.1	1.25
Merged-chr1-131270438-1	chr1	131269938	131270938	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019777, intron 10 of 21)	intron (NM_019777, intron 10 of 21)	9125.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	8.01	5.07	0.92	2.02	0.0	0.0	4.22	2.65	1.25
Merged-chr11-111064859-2	chr11	111064369	111065369	+	700.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1295.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	11.44	7.83	2.77	18.89	13.06	25.72	16.9	12.82	11.87
Merged-chr1-30872159-1	chr1	30871659	30872659	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8903.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	12.01	14.75	10.17	33.74	27.06	20.9	31.69	30.95	13.74
Merged-chr2-165883909-1	chr2	165883409	165884409	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252587, intron 1 of 11)	intron (NM_001252587, intron 1 of 11)	929.0	NM_001252584	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	125.28	137.77	142.44	144.39	118.03	153.52	215.46	232.58	108.67
Merged-chrX-71270886-2	chrX	71270385	71271385	+	700.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	intron (NM_001358113, intron 6 of 15)	55811.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.58	10.14	3.7	5.4	3.27	17.68	6.34	9.29	11.87
Merged-chr17-56159912-3	chr17	56159445	56160445	+	700.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2546.0	NM_025566	66443.0	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	2.29	4.15	1.85	2.7	0.47	4.82	4.22	0.0	1.25
Merged-chr17-48301004-3	chr17	48300539	48301539	+	700.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360121, intron 1 of 4)	intron (NM_001360121, intron 1 of 4)	1001.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	9.15	15.21	13.87	12.82	10.73	17.68	45.42	26.09	18.74
Merged-chr4-56865278-3	chr4	56864783	56865783	+	700.422241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018761)	promoter-TSS (NM_018761)	-72.0	NM_018761	54366.0	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	3.43	2.3	3.7	2.7	2.8	5.63	2.11	0.44	6.25
Merged-chrX-109012791-5	chrX	109012228	109013228	+	700.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016710, intron 1 of 5)	intron (NM_016710, intron 1 of 5)	652.0	NM_016710	50887.0	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	44.62	48.38	46.25	56.68	35.92	41.8	58.09	50.85	24.98
Merged-chr13-30767909-3	chr13	30767415	30768415	+	700.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013674)	TTS (NM_013674)	18682.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	41.19	64.05	45.32	29.69	45.72	51.44	35.91	53.94	48.71
Merged-chr14-19807594-2	chr14	19807066	19808066	+	700.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008695, intron 17 of 20)	MLT1F2|LTR|ERVL-MaLR	16257.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	5.15	10.6	15.72	6.07	8.4	18.49	12.67	7.07	14.36
Merged-chr4-99298885-2	chr4	99298403	99299403	+	700.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	104756.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	1.14	3.69	0.0	4.72	4.67	3.22	2.11	0.88	1.25
Merged-chr5-74794332-1	chr5	74793832	74794832	+	700.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-91429.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	2.29	2.3	0.0	14.17	10.73	13.66	3.17	2.21	5.62
Merged-chr11-86599510-1	chr11	86599010	86600010	+	700.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	(A)n|Simple_repeat|Simple_repeat	-15352.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	10.3	14.28	18.5	5.4	6.53	9.65	23.24	27.41	11.87
Merged-chr15-89171843-3	chr15	89171346	89172346	+	700.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138749, intron 1 of 37)	intron (NM_138749, intron 1 of 37)	2105.0	NM_001159521	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	24.6	34.1	49.02	37.78	25.19	40.99	59.15	26.09	25.61
Merged-chr4-16080440-2	chr4	16079943	16080943	+	700.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-66555.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	17.73	15.67	10.17	10.8	10.26	8.04	6.34	11.5	19.98
Merged-chr10-42903238-2	chr10	42902721	42903721	+	700.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	42709.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	5.72	5.53	6.47	6.75	3.73	0.8	4.22	0.88	2.5
Merged-chrX-150956796-2	chrX	150956298	150957298	+	700.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60495.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	5.15	1.84	0.0	3.37	2.33	1.61	2.11	0.0	0.0
Merged-chr2-117374013-3	chr2	117373512	117374512	+	700.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31135.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	44.05	33.18	23.12	32.39	20.53	22.51	59.15	34.05	8.74
Merged-chr2-167001117-3	chr2	167000612	167001612	+	700.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	-4813.0	NM_001109905	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	7.44	4.15	1.85	10.8	2.33	3.22	16.9	5.75	5.0
Merged-chr7-101584484-2	chr7	101583998	101584998	+	700.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3337.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	12.59	13.82	26.82	12.14	7.93	6.43	79.21	65.44	54.33
Merged-chr11-53788492-2	chr11	53787980	53788980	+	700.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	18007.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	5.15	7.83	7.4	4.05	0.93	6.43	30.63	15.48	11.24
Merged-chr10-120189439-2	chr10	120188939	120189939	+	700.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	12158.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	7.44	20.74	10.17	12.82	14.0	11.25	31.69	19.01	18.74
Merged-chr6-47396122-2	chr6	47395630	47396630	+	700.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57602.0	NM_001355551	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	2.86	8.75	0.0	5.4	2.8	1.61	0.0	4.86	1.25
Merged-chr7-126703785-2	chr7	126703271	126704271	+	700.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009898, intron 1 of 10)	intron (NM_009898, intron 1 of 10)	449.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	24.03	33.18	49.02	18.89	20.99	37.78	32.74	30.51	27.48
Merged-chr4-88119096-3	chr4	88118538	88119538	+	700.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-3002.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	1.72	2.76	3.7	11.47	2.8	6.43	3.17	2.65	3.75
Merged-chr1-176832206-3	chr1	176831724	176832724	+	700.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 5 of 18)	intron (NM_001357390, intron 5 of 18)	3909.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	64.07	40.55	59.2	68.15	39.65	54.66	67.6	61.9	63.7
Merged-chr7-17066547-3	chr7	17066041	17067041	+	700.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4114.0	NM_001162950	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	1.72	0.92	1.85	3.37	1.87	1.61	1.06	1.77	0.0
Merged-chr1-136175370-2	chr1	136174862	136175862	+	700.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153829, exon 36 of 36)	non-coding (NR_153829, exon 36 of 36)	37466.0	NM_001329610	76422.0	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	5.72	2.76	5.55	10.12	1.4	3.22	1.06	0.88	5.0
Merged-chr11-95411707-2	chr11	95411229	95412229	+	700.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2354.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	30.32	29.03	33.3	19.57	9.33	21.7	46.47	48.2	29.98
Merged-chr7-79887139-1	chr7	79886639	79887639	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009682, intron 4 of 5)	L1M7|LINE|L1	33501.0	NM_009682	11778.0	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	7.44	5.99	7.4	4.05	3.27	6.43	7.39	4.42	2.5
Merged-chr3-86343629-1	chr3	86343129	86344129	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077687, intron 22 of 50)	Lx7|LINE|L1	118939.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	6.86	3.69	1.85	3.37	3.27	1.61	7.39	3.54	6.25
Merged-chr3-95666088-2	chr3	95665586	95666586	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7365.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	46.91	54.37	57.35	40.48	30.32	54.66	46.47	48.2	50.59
Merged-chr18-67194407-1	chr18	67193907	67194907	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	B3A|SINE|B2	-10952.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	5.15	7.37	12.95	12.14	7.0	10.45	1.06	2.21	6.25
Merged-chr6-89638218-1	chr6	89637718	89638718	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-5770.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	6.29	3.69	1.85	2.02	1.4	6.43	5.28	7.07	1.25
Merged-chr8-110384927-1	chr8	110384427	110385427	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 11 of 86)	B1_Mus1|SINE|Alu	117429.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	2.29	2.76	5.55	2.02	3.27	0.0	17.96	21.67	17.49
Merged-chr15-8712672-1	chr15	8712172	8713172	+	700.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1865.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	18.88	16.13	33.3	5.4	5.13	0.0	12.67	18.57	22.48
Merged-chr18-53529003-1	chr18	53528503	53529503	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033281, intron 2 of 6)	intron (NM_001033281, intron 2 of 6)	64457.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	4.58	1.84	4.62	4.72	4.2	4.82	1.06	0.88	6.87
Merged-chr5-101932161-1	chr5	101931661	101932661	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 15 of 66)	B3A|SINE|B2	137760.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	6.86	5.07	1.85	3.37	4.2	9.65	6.34	3.98	6.25
Merged-chr6-72050826-1	chr6	72050326	72051326	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8298.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	14.87	3.23	0.0	6.75	3.27	0.8	3.17	3.54	12.49
Merged-chr16-31188234-3	chr16	31187734	31188734	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	MER45A|DNA|hAT-Tip100	13004.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	16.59	15.67	21.27	19.57	14.46	5.63	25.35	19.9	5.62
Merged-chr1-177478755-1	chr1	177478255	177479255	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	32934.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	3.43	2.3	3.7	2.7	1.4	4.82	4.22	13.71	8.74
Merged-chr10-128174197-2	chr10	128173692	128174692	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039080, intron 2 of 13)	intron (NM_001039080, intron 2 of 13)	2376.0	NM_019711	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	13.73	12.44	5.55	4.05	7.0	11.25	13.73	6.19	14.99
Merged-chr14-70160250-1	chr14	70159750	70160750	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004155)	promoter-TSS (NM_001004155)	-748.0	NM_001004155	268759.0	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	9.72	10.6	10.17	23.62	12.13	19.29	28.52	30.95	13.12
Merged-chr11-120150013-2	chr11	120149517	120150517	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361699, intron 1 of 16)	intron (NM_001361699, intron 1 of 16)	1334.0	NM_001361698	72055.0	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	54.92	30.41	12.95	53.3	18.19	12.86	55.98	34.05	20.61
Merged-chr8-110622047-1	chr8	110621547	110622547	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151675, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	3480.0	NR_151675	234729.0	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	13.16	10.6	12.95	12.82	7.93	4.82	15.84	13.27	16.24
Merged-chr4-127027495-3	chr4	127027026	127028026	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045010, intron 9 of 11)	intron (NR_045010, intron 9 of 11)	6225.0	NM_023603	71514.0	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	17.16	16.59	16.65	4.72	14.0	18.49	17.96	11.05	14.36
Merged-chr9-40333789-1	chr9	40333289	40334289	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	317.0	NR_040728	73558.0	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	4.0	2.3	1.85	2.7	2.33	0.0	2.11	0.88	3.75
Merged-chr18-36507889-2	chr18	36507387	36508387	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7918.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.72	0.92	0.0	2.02	3.27	1.61	6.34	0.88	5.0
Merged-chr14-120277915-1	chr14	120277415	120278415	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	2246.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	336.37	319.32	167.42	344.78	303.7	174.42	295.73	353.29	172.37
Merged-chr10-23194387-1	chr10	23193887	23194887	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010167, intron 3 of 18)	intron (NM_010167, intron 3 of 18)	155503.0	NM_001347372	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	2.29	1.84	1.85	3.37	2.33	4.82	1.06	3.54	7.49
Merged-chr11-93886664-1	chr11	93886164	93887164	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001013375)	promoter-TSS (NM_001013375)	445.0	NM_134012	103537.0	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	304.9	229.01	256.21	257.07	164.21	140.66	347.48	319.69	123.03
Merged-chr11-59549572-1	chr11	59549072	59550072	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145827, exon 4 of 10)	exon (NM_145827, exon 4 of 10)	6886.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	11.44	10.6	20.35	21.59	20.53	19.29	26.4	17.24	17.49
Merged-chr7-88310947-1	chr7	88310447	88311447	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009982, exon 7 of 7)	3' UTR (NM_009982, exon 7 of 7)	32862.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	13.73	21.66	21.27	10.8	14.93	23.31	14.79	9.29	13.12
Merged-chr4-117544863-2	chr4	117544387	117545387	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5437.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	32.04	31.79	41.62	37.78	34.52	50.64	47.53	62.79	24.98
Merged-chr3-104524658-1	chr3	104524158	104525158	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-12740.0	NM_001310698	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	20.02	13.82	14.8	29.01	15.39	16.08	12.67	10.17	5.62
Merged-chr2-129431512-1	chr2	129431012	129432012	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60373.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	9.72	7.83	7.4	13.49	11.66	13.66	5.28	8.4	6.87
Merged-chrX-152159511-1	chrX	152159011	152160011	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	15243.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	2.86	3.23	3.7	2.7	3.27	3.22	5.28	0.0	5.0
Merged-chr10-117841096-1	chr10	117840596	117841596	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	4878.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	146.45	157.13	79.55	137.64	79.77	91.63	145.75	147.24	65.58
Merged-chr10-61275917-3	chr10	61275412	61276412	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2474.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	5.72	0.46	2.77	3.37	1.4	1.61	3.17	3.1	0.62
Merged-chr5-21221108-2	chr5	21220607	21221607	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34840.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	12.59	15.21	11.1	10.8	9.8	8.04	16.9	7.07	11.24
Merged-chr5-44215796-3	chr5	44215288	44216288	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	10818.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	8.58	5.07	9.25	9.45	5.13	3.22	12.67	11.5	10.62
Merged-chr4-54669243-2	chr4	54668733	54669733	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-278712.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	10.87	17.05	2.77	5.4	11.66	19.29	2.11	0.88	8.74
Merged-chr5-134101766-2	chr5	134101272	134102272	+	700.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030719, intron 1 of 8)	intron (NM_030719, intron 1 of 8)	2024.0	NM_030719	80909.0	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Castor2|Gats|Gatsl1	GATS protein-like 2	protein-coding	40.04	41.01	53.65	52.63	39.19	52.25	72.88	50.41	58.71
Merged-chr3-37348595-2	chr3	37348106	37349106	+	700.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008006)	promoter-TSS (NM_008006)	-47.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	1.14	1.38	3.7	4.05	2.33	8.04	3.17	4.42	5.0
Merged-chrX-13243012-4	chrX	13242687	13243687	+	699.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045429, intron 1 of 2)	intron (NR_045429, intron 1 of 2)	4546.0	NR_045429	72122.0	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	61.78	51.61	66.6	52.63	50.85	73.14	54.92	67.65	39.35
Merged-chr2-3723977-3	chr2	3723516	3724516	+	699.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	10558.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	28.6	24.88	7.4	24.29	20.53	23.31	15.84	12.38	6.25
Merged-chr15-76661274-3	chr15	76660751	76661751	+	699.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001358912, exon 3 of 18)	exon (NM_001358912, exon 3 of 18)	670.0	NM_001358911	16581.0	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	4.0	1.38	3.7	5.4	2.33	7.23	5.28	5.75	3.12
Merged-chr17-47600130-2	chr17	47599614	47600614	+	699.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001081636)	TTS (NM_001081636)	6647.0	NM_007632	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	21.17	15.67	36.07	18.89	17.26	25.72	26.4	22.55	20.61
Merged-chr8-106528217-3	chr8	106527702	106528702	+	699.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007665, intron 2 of 15)	B4|SINE|B4	17350.0	NM_001037809	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	4.58	0.92	0.0	12.14	4.67	4.82	6.34	3.54	7.49
Merged-chr17-43536731-3	chr17	43536231	43537231	+	699.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254953, intron 2 of 2)	intron (NM_001254953, intron 2 of 2)	6908.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	10.3	16.13	16.65	26.99	9.33	40.19	13.73	7.07	36.85
Merged-chr14-70914563-2	chr14	70914079	70915079	+	699.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 2 of 7)	intron (NM_001302094, intron 2 of 7)	24472.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	17.16	23.04	30.52	16.19	19.13	9.65	11.62	15.03	8.12
Merged-chr3-83867177-2	chr3	83866676	83867676	+	699.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A|LTR|ERVK	-25568.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.15	11.98	3.7	10.12	3.27	0.0	2.11	5.75	1.87
Merged-chr1-23792947-2	chr1	23792456	23793456	+	699.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	31030.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	3.43	2.76	0.0	2.7	1.4	1.61	2.11	2.21	3.75
Merged-chr6-35028491-2	chr6	35027978	35028978	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164413, intron 10 of 11)	intron (NM_001164413, intron 10 of 11)	-50479.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	9.15	1.84	1.85	10.12	0.93	1.61	6.34	2.21	2.5
Merged-chr3-93444722-2	chr3	93444218	93445218	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163098, exon 2 of 2)	exon (NM_001163098, exon 2 of 2)	2388.0	NM_001163098	99681.0	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	1.14	5.07	0.0	4.05	2.8	4.82	4.22	0.44	8.74
Merged-chr16-90386943-2	chr16	90386436	90387436	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015755, intron 1 of 10)	CpG	539.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	21.74	14.28	11.1	18.22	12.6	1.61	6.34	6.63	2.5
Merged-chr17-28192908-2	chr17	28192403	28193403	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357995, intron 2 of 13)	intron (NM_001357995, intron 2 of 13)	-14875.0	NM_027185	23853.0	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	4.0	4.15	5.55	6.75	1.87	6.43	13.73	7.52	2.5
Merged-chr1-191194734-2	chr1	191194283	191195283	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11450.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	52.06	32.72	13.87	58.7	35.45	33.76	57.03	35.37	34.35
Merged-chr13-73971265-2	chr13	73970773	73971773	+	699.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153830, intron 2 of 9)	intron (NR_153830, intron 2 of 9)	7422.0	NM_027704	71164.0	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	6.86	4.61	1.85	7.42	5.13	7.23	4.22	3.54	5.62
Merged-chr13-115077540-2	chr13	115077046	115078046	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033228, intron 1 of 28)	intron (NM_001033228, intron 1 of 28)	12612.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	1.72	5.53	3.7	5.4	4.67	6.43	9.51	3.54	5.0
Merged-chr4-3746288-2	chr4	3745802	3746802	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 6 of 12)	intron (NM_001111096, intron 6 of 12)	31338.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	72.65	56.68	31.45	70.17	31.72	22.51	55.98	66.77	42.47
Merged-chr7-97075186-2	chr7	97074705	97075705	+	699.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6546.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	3.43	4.15	1.85	2.7	4.2	18.49	5.28	3.1	4.37
Merged-chr18-80260569-3	chr18	80260082	80261082	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 2 of 5)	intron (NM_025861, intron 2 of 5)	4276.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	10.87	12.9	24.97	15.52	16.33	8.04	7.39	12.38	16.24
Merged-chr10-128535365-2	chr10	128534872	128535872	+	699.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-9513.0	NM_011843	23943.0	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	52.63	42.39	33.3	41.83	30.79	50.64	35.91	29.63	21.86
Merged-chr8-45416108-3	chr8	45415591	45416591	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30D2_MM|LTR|ERV1	-5472.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	15.45	24.42	21.27	18.89	11.2	26.53	16.9	20.34	18.11
Merged-chr16-78301883-4	chr16	78301339	78302339	+	699.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276263, exon 1 of 3)	exon (NM_001276263, exon 1 of 3)	168.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	7.44	1.84	1.85	8.1	2.8	8.04	4.22	0.88	5.0
Merged-chr3-123103427-3	chr3	123102952	123103952	+	699.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080451, intron 4 of 4)	intron (NM_080451, intron 4 of 4)	-68465.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	5.72	0.92	5.55	2.7	2.8	1.61	2.11	1.33	0.0
Merged-chr6-143219569-2	chr6	143219062	143220062	+	699.791626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26326.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	7.44	4.61	5.55	14.17	7.93	8.84	6.34	7.96	6.25
Merged-chr3-137945686-3	chr3	137945205	137946205	+	699.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	27150.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	34.9	38.25	28.67	52.63	34.52	36.17	26.4	32.28	28.1
Merged-chr2-148878921-2	chr2	148878417	148879417	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3405.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	4.58	6.45	3.7	8.1	2.33	11.25	15.84	5.75	3.75
Merged-chr14-14619596-1	chr14	14619096	14620096	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-83429.0	NM_001360505	218756.0	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	10.3	6.45	5.55	5.4	2.33	0.0	2.11	1.77	3.12
Merged-chr17-44419134-1	chr17	44418634	44419634	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	230562.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	5.15	4.61	1.85	10.8	3.73	6.43	7.39	1.33	4.37
Merged-chr17-44456211-2	chr17	44455706	44456706	+	699.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	267634.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	2.86	4.15	0.0	3.37	2.8	0.8	6.34	2.21	4.37
Merged-chr4-154334863-1	chr4	154334363	154335363	+	699.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291026, intron 11 of 16)	intron (NM_001291026, intron 11 of 16)	-34968.0	NM_001112744	230972.0	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.57	2.3	8.32	4.05	0.93	3.22	11.62	8.4	12.49
Merged-chr1-152043671-1	chr1	152043171	152044171	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	46649.0	NM_197990	69399.0	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	8.01	7.37	2.77	12.14	3.73	13.66	5.28	2.21	2.5
Merged-chrX-140539058-3	chrX	140538545	140539545	+	699.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_122039)	TTS (NR_122039)	3623.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	44.05	53.45	20.35	49.93	29.39	28.94	30.63	30.95	35.6
Merged-chr13-51908348-3	chr13	51907867	51908867	+	699.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61692.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	14.3	14.75	14.8	18.89	27.06	8.84	23.24	13.27	2.5
Merged-chr12-69297253-1	chr12	69296753	69297753	+	699.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027117, intron 1 of 12)	CpG	572.0	NM_027117	69554.0	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	57.21	28.57	24.05	67.47	45.25	45.82	71.82	39.8	34.35
Merged-chr10-112927137-1	chr10	112926637	112927637	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033474, exon 1 of 1)	3' UTR (NM_001033474, exon 1 of 1)	1889.0	NM_001033474	382423.0	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132	ataxin 7-like 3B	protein-coding	6.29	8.75	1.85	4.05	7.0	4.82	8.45	3.1	5.62
Merged-chr7-118114002-1	chr7	118113502	118114502	+	699.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170669, intron 3 of 4)	intron (NM_170669, intron 3 of 4)	2145.0	NM_170669	267019.0	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	22.88	25.8	27.75	22.94	17.26	22.51	25.35	19.9	11.24
Merged-chr10-68013336-2	chr10	68012815	68013815	+	699.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359319, intron 6 of 11)	intron (NM_001359319, intron 6 of 11)	33745.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	1.14	0.0	1.85	1.35	1.4	0.0	1.06	1.33	1.25
Merged-chr6-67168506-2	chr6	67168043	67169043	+	699.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42|LTR|ERVK	-98436.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	16.59	6.45	9.25	7.42	6.53	14.47	7.39	5.75	11.24
Merged-chr19-37851697-2	chr19	37851195	37852195	+	699.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153887.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	4.0	4.61	0.0	1.35	3.27	3.22	2.11	0.44	3.75
Merged-chr3-32401322-3	chr3	32400795	32401795	+	699.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34856.0	NM_008839	18706.0	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	36.61	40.55	22.2	39.81	27.52	40.19	48.58	39.35	37.47
Merged-chr6-83838394-2	chr6	83837891	83838891	+	699.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-6650.0	NM_146169	232164.0	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	8.58	7.37	15.72	12.82	12.6	9.65	10.56	9.73	8.12
Merged-chr7-122940514-3	chr7	122940015	122941015	+	699.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29944.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	95.53	94.92	61.05	65.45	55.05	44.21	63.37	76.05	44.34
Merged-chr9-44232732-3	chr9	44232237	44233237	+	699.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 1 of 15)	intron (NM_007619, intron 1 of 15)	1309.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	78.94	83.4	71.22	74.89	59.71	77.97	141.53	144.59	75.57
Merged-chr3-108574156-3	chr3	108573633	108574633	+	699.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025444, intron 2 of 3)	ID_B1|SINE|B4	2434.0	NM_025444	99730.0	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	12.59	10.6	9.25	10.12	8.4	8.84	11.62	8.4	7.49
Merged-chr17-73055355-2	chr17	73054849	73055849	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52636.0	NM_001177968	225010.0	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	22.88	12.9	15.72	6.07	4.2	12.86	15.84	14.15	12.49
Merged-chr11-61843678-1	chr11	61843178	61844178	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013881, intron 3 of 26)	intron (NM_013881, intron 3 of 26)	11414.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	18.88	17.97	25.9	28.34	10.73	25.72	25.35	16.36	27.48
Merged-chr17-43332548-1	chr17	43332048	43333048	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27883.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	6.29	4.15	11.1	9.45	4.67	1.61	10.56	7.96	5.62
Merged-chr6-28869343-2	chr6	28868832	28869832	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	-37585.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	13.73	13.36	24.97	8.77	6.06	24.11	22.18	9.29	12.49
Merged-chr18-62464704-1	chr18	62464204	62465204	+	699.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008313, exon 7 of 7)	3' UTR (NM_008313, exon 7 of 7)	79148.0	NM_001361091	107035.0	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0.57	0.92	1.85	7.42	6.53	1.61	5.28	1.77	5.0
Merged-chr6-83159633-3	chr6	83159112	83160112	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027948, intron 1 of 3)	B2_Mm2|SINE|B2	3208.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	2.86	3.23	0.0	10.12	2.33	7.23	4.22	4.86	3.75
Merged-chr7-102496825-1	chr7	102496325	102497325	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-2052.0	NM_146840	258837.0	Mm.377714	NM_146840	ENSMUSG00000044824	Olfr545	MOR42-1|S50	olfactory receptor 545	protein-coding	6.86	11.52	3.7	14.84	4.2	9.65	13.73	10.61	8.74
Merged-chr12-86836125-1	chr12	86835625	86836625	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48689.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	30.32	33.64	13.87	44.53	50.38	38.58	66.54	63.67	28.1
Merged-chr5-5415587-2	chr5	5415080	5416080	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35329.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.44	5.53	1.85	8.77	3.73	11.25	7.39	7.07	8.12
Merged-chr10-19978983-3	chr10	19978489	19979489	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	RLTR11B|LTR|ERVK	44463.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.72	11.06	14.8	12.82	10.26	12.06	8.45	8.4	11.24
Merged-chr3-66978906-1	chr3	66978406	66979406	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302358)	promoter-TSS (NM_001302358)	-95.0	NM_001302358	20429.0	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.0	1.38	2.77	5.4	1.87	1.61	2.11	1.77	1.25
Merged-chr6-54021377-2	chr6	54020890	54021890	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18542.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	8.58	5.53	10.17	15.52	6.53	4.02	30.63	34.05	14.99
Merged-chr10-19121747-1	chr10	19121247	19122247	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20002.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	50.34	45.16	30.52	50.6	36.39	55.46	3.17	0.44	6.87
Merged-chr13-101119738-1	chr13	101119238	101120238	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112389.0	NR_046158	328324.0	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	1.72	1.84	1.85	6.07	7.0	6.43	5.28	3.54	1.25
Merged-chr19-47169208-3	chr19	47168669	47169669	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9651.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	13.16	6.91	0.0	7.42	4.2	9.65	14.79	15.92	3.75
Merged-chr14-75175231-5	chr14	75174732	75175732	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 1 of 16)	intron (NM_008879, intron 1 of 16)	38807.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	48.05	84.32	49.95	61.4	55.51	37.78	53.87	54.83	50.59
Merged-chr1-154103134-2	chr1	154102621	154103621	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98066.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	50.91	47.92	39.77	60.72	31.72	36.17	25.35	34.05	17.49
Merged-chr10-61336375-2	chr10	61335877	61336877	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 18 of 19)	intron (NM_013753, intron 18 of 19)	38541.0	NM_011073	18646.0	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	9.15	5.99	9.25	8.1	0.93	0.0	3.17	3.98	5.0
Merged-chr3-153902995-3	chr3	153902497	153903497	+	699.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031870, intron 1 of 19)	RMER16_Mm|LTR|ERVK	1894.0	NM_001282054	55993.0	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	5.72	7.37	12.02	15.52	8.86	20.09	9.51	7.96	14.99
Merged-chr10-79669863-2	chr10	79669362	79670362	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148934, intron 1 of 1)	CpG	452.0	NM_148934	110012.0	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	22.31	37.78	43.47	37.78	24.72	36.17	58.09	49.96	45.59
Merged-chr8-107436678-1	chr8	107436178	107437178	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	280.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	147.59	177.86	142.44	171.38	231.85	143.88	219.69	240.98	123.66
Merged-chr18-61477669-2	chr18	61477180	61478180	+	699.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045419, intron 1 of 3)	intron (NR_045419, intron 1 of 3)	6927.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	12.01	1.84	13.87	8.77	4.67	0.0	12.67	2.65	8.12
Merged-chr17-35222417-3	chr17	35221944	35222944	+	699.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010909, intron 2 of 3)	intron (NM_010909, intron 2 of 3)	-12566.0	NM_001347351	66237.0	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	18.88	9.22	13.87	9.45	11.2	12.06	25.35	16.36	15.61
Merged-chr13-30003329-3	chr13	30002840	30003840	+	699.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17277.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	5.72	4.61	3.7	6.07	3.73	4.82	6.34	4.42	7.49
Merged-chr15-31366113-3	chr15	31365680	31366680	+	699.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	1579.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	4.0	3.69	0.0	12.82	5.6	3.22	10.56	9.29	1.87
Merged-chr8-26960340-2	chr8	26959818	26960818	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17018.0	NM_001101502	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	17.73	16.59	27.75	22.94	19.59	24.11	8.45	9.29	6.25
Merged-chr13-55464431-2	chr13	55463902	55464902	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001030296, exon 1 of 3)	5' UTR (NM_001030296, exon 1 of 3)	135.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	8.01	1.38	0.0	4.05	4.67	6.43	4.22	0.44	2.5
Merged-chr4-150862892-2	chr4	150862388	150863388	+	699.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133753, intron 1 of 3)	intron (NM_133753, intron 1 of 3)	7818.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	32.04	28.11	30.52	30.36	21.46	24.11	31.69	17.69	14.36
Merged-chr2-91929583-3	chr2	91929078	91930078	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291483)	TTS (NM_001291483)	2124.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	4.0	4.61	1.85	0.67	3.27	12.86	7.39	6.63	3.75
Merged-chr13-95799569-3	chr13	95799085	95800085	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	92337.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	8.01	11.52	7.4	20.24	12.6	6.43	20.07	9.29	9.99
Merged-chrX-12160502-3	chrX	12160012	12161012	+	699.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168321)	promoter-TSS (NM_001168321)	-157.0	NM_001168321	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	80.09	62.21	46.25	81.64	75.57	58.68	88.72	63.67	55.58
Merged-chr8-71370842-1	chr8	71370342	71371342	+	699.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029865)	promoter-TSS (NM_029865)	-456.0	NM_029865	77090.0	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	57.78	72.34	42.55	43.86	35.45	40.19	67.6	94.18	58.08
Merged-chr13-41615629-1	chr13	41615129	41616129	+	699.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	9413.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	36.61	31.79	37.0	29.69	25.66	28.13	33.8	34.49	22.48
Merged-chr2-155135706-1	chr2	155135206	155136206	+	699.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	2225.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	123.56	88.47	74.92	85.69	45.72	84.4	163.71	150.34	62.45
Merged-chr13-94709892-2	chr13	94709386	94710386	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79057.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	6.86	7.37	3.7	7.42	6.06	8.04	8.45	12.38	11.24
Merged-chr6-17647503-3	chr6	17647005	17648005	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	L1MD1|LINE|L1	10495.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	30.89	40.55	24.05	39.81	22.86	43.4	30.63	32.28	26.23
Merged-chr1-177623620-2	chr1	177623117	177624117	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19326.0	NR_037994	75589.0	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	4.58	2.76	0.0	7.42	1.4	2.41	1.06	1.77	11.24
Merged-chr5-124532724-2	chr5	124532207	124533207	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1316.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	30.32	49.3	45.32	35.09	28.46	31.35	40.14	40.24	44.34
Merged-chr19-12735198-2	chr19	12734693	12735693	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30439.0	NM_170786	12803.0	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	6.86	7.83	6.47	9.45	5.6	4.82	15.84	12.82	15.61
Merged-chr1-143738929-2	chr1	143738427	143739427	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023505)	promoter-TSS (NM_023505)	-422.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	21.74	38.25	29.6	39.13	32.66	24.92	39.08	30.95	10.62
Merged-chr17-71207381-2	chr17	71206851	71207851	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	PB1D10|SINE|Alu	2697.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	36.61	25.8	16.65	20.92	13.53	16.08	50.7	58.81	28.1
Merged-chr10-66928797-2	chr10	66928294	66929294	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8410.0	NR_138561	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	44.62	18.43	12.95	51.95	24.26	30.54	42.25	35.82	18.74
Merged-chr11-21179252-2	chr11	21178748	21179748	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	-59784.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	4.0	1.84	0.0	4.05	6.06	5.63	4.22	1.33	6.25
Merged-chr17-45579054-2	chr17	45578542	45579542	+	699.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5781.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	14.87	13.82	15.72	16.87	10.26	20.09	3.17	0.88	5.62
Merged-chr17-15380792-2	chr17	15380325	15381325	+	699.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5002.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	1.14	0.46	2.77	2.02	3.27	1.61	1.06	2.65	3.75
Merged-chr15-64047181-2	chr15	64046695	64047695	+	699.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	12569.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	92.1	93.54	86.95	62.75	63.45	67.52	88.72	68.09	64.95
Merged-chr15-64256748-2	chr15	64256243	64257243	+	699.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	55930.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	23.45	39.63	29.6	29.01	23.79	19.29	55.98	37.14	39.97
Merged-chr10-93166081-3	chr10	93165708	93166708	+	699.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	3423.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	33.18	40.09	49.95	28.34	34.52	50.64	88.72	83.13	61.83
Merged-chr2-131423155-4	chr2	131422641	131423641	+	699.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-68721.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	61.21	32.72	42.55	62.75	44.78	57.87	80.27	63.23	26.23
Merged-chr10-82913925-3	chr10	82913428	82914428	+	699.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	47302.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	7.44	2.3	1.85	6.75	5.13	3.22	6.34	2.21	1.25
Merged-chr7-128724937-3	chr7	128724421	128725421	+	699.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 2 of 15)	intron (NM_145955, intron 2 of 15)	15508.0	NM_145955	210711.0	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	6.86	3.23	7.4	2.7	5.6	5.63	1.06	3.98	3.75
Merged-chr6-34955685-3	chr6	34955179	34956179	+	699.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025573, intron 5 of 7)	intron (NM_001025573, intron 5 of 7)	22320.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	6.86	3.23	8.32	8.77	6.53	0.0	8.45	11.5	6.87
Merged-chr11-62789425-1	chr11	62788925	62789925	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138949)	promoter-TSS (NM_138949)	-8.0	NM_138949	192651.0	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	3.43	6.45	9.25	8.1	7.93	9.65	5.28	7.96	2.5
Merged-chr11-35708629-1	chr11	35708129	35709129	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011412)	TTS (NM_011412)	-60866.0	NM_145962	211347.0	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	3.43	4.61	3.7	6.07	1.4	9.65	25.35	19.01	9.99
Merged-chr3-105796893-1	chr3	105796393	105797393	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	4488.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	33.75	44.7	27.75	33.06	39.65	36.17	53.87	53.94	29.98
Merged-chr10-70261160-1	chr10	70260660	70261660	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025807, intron 2 of 5)	intron (NM_025807, intron 2 of 5)	15884.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	5.72	7.83	1.85	16.19	11.2	4.02	8.45	5.75	7.49
Merged-chr6-146855219-1	chr6	146854719	146855719	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027059, intron 2 of 9)	MTE2b|LTR|ERVL-MaLR	5109.0	NM_027059	69371.0	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	2.29	2.76	3.7	0.67	5.6	1.61	1.06	0.0	0.0
Merged-chr17-87954831-1	chr17	87954331	87955331	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-20219.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	7.44	4.61	24.97	6.07	4.2	16.08	13.73	2.21	11.24
Merged-chr2-148046257-2	chr2	148045722	148046722	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291067)	promoter-TSS (NM_001291067)	-274.0	NM_001291065	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.43	0.92	4.62	3.37	2.33	4.82	5.28	0.44	0.0
Merged-chr1-43934749-1	chr1	43934249	43935249	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	755.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	266.58	483.82	345.01	292.83	473.04	329.55	317.91	430.67	264.8
Merged-chr11-22873550-2	chr11	22872998	22873998	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13162.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	25.17	27.19	22.2	16.87	20.53	29.74	24.29	20.34	21.86
Merged-chr2-75732139-1	chr2	75731639	75732639	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27476.0	NM_010902	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	157.89	125.79	77.7	148.44	106.36	102.08	142.59	159.18	99.3
Merged-chr1-16162715-1	chr1	16162215	16163215	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	56833.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	9.15	4.61	11.1	8.1	3.73	8.84	17.96	7.52	12.49
Merged-chr5-132430200-1	chr5	132429700	132430700	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	112143.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	3.43	0.0	12.95	8.1	4.2	4.82	1.06	0.44	3.75
Merged-chr12-40485463-1	chr12	40484963	40485963	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	39410.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	26.89	26.26	23.12	29.01	29.39	22.51	17.96	19.9	18.11
Merged-chr16-34920269-1	chr16	34919769	34920769	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139300, intron 14 of 31)	intron (NM_139300, intron 14 of 31)	19060.0	NR_040536	76649.0	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	1.72	0.46	1.85	2.02	0.47	3.22	1.06	0.44	1.25
Merged-chr11-106627926-3	chr11	106627435	106628435	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15005.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	4.0	3.69	1.85	5.4	2.33	8.84	5.28	3.1	5.62
Merged-chr4-16044894-1	chr4	16044394	16045394	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	-31006.0	NM_145950	209212.0	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	2.29	5.07	5.55	4.05	1.4	4.82	4.22	8.4	6.87
Merged-chr12-4164985-1	chr12	4164485	4165485	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	intron (NM_001159537, intron 2 of 21)	30832.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	16.59	8.75	15.72	18.89	18.66	18.49	8.45	3.1	5.0
Merged-chr9-35558450-1	chr9	35557950	35558950	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013932)	promoter-TSS (NM_013932)	20.0	NM_013932	30959.0	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	1.72	1.38	0.92	2.02	2.33	1.61	3.17	1.33	2.5
Merged-chr9-61703274-2	chr9	61702774	61703774	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	211236.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	76.08	72.8	49.95	101.88	66.71	41.8	78.16	67.21	50.59
Merged-chr18-82767245-2	chr18	82766750	82767750	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8211.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	2.29	2.3	1.85	2.7	2.33	0.0	4.22	3.1	3.75
Merged-chrX-170673457-1	chrX	170672957	170673957	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 1 of 7)	intron (NM_001308488, intron 1 of 7)	813.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	1.14	0.0	0.0	10.8	0.93	4.82	9.51	6.19	3.12
Merged-chr18-60710117-1	chr18	60709617	60710617	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348100, intron 2 of 14)	intron (NM_001348100, intron 2 of 14)	17449.0	NM_001348103	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	7.44	5.07	12.95	9.45	6.06	9.65	5.28	2.21	2.5
Merged-chr5-64396374-1	chr5	64395874	64396874	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	71568.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	4.58	7.37	1.85	4.72	1.4	4.82	4.22	5.31	5.0
Merged-chr13-109294601-1	chr13	109294101	109295101	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-30143.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	8.01	5.99	2.77	2.7	5.6	9.65	12.67	7.07	7.49
Merged-chr13-69528651-1	chr13	69528151	69529151	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198600, intron 1 of 12)	intron (NM_198600, intron 1 of 12)	5213.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	8.01	9.22	9.25	5.4	6.53	10.45	8.45	7.07	7.49
Merged-chr15-25843716-1	chr15	25843216	25844216	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034851, intron 1 of 8)	intron (NM_001034851, intron 1 of 8)	418.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	14.3	7.37	3.7	31.71	14.0	18.49	17.96	9.29	5.62
Merged-chr8-103919516-1	chr8	103919016	103920016	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182109.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	1.72	6.45	1.85	10.8	5.13	8.84	6.34	5.31	2.5
Merged-chr18-62033194-2	chr18	62032692	62033692	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31D_MM|LTR|ERVK	80117.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	24.6	23.96	12.95	33.74	18.66	18.49	7.39	4.86	2.5
Merged-chr1-5020021-1	chr1	5019521	5020521	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021374)	promoter-TSS (NM_021374)	-482.0	NM_021374	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	6.86	2.3	1.85	7.42	6.06	5.63	0.0	2.65	3.75
Merged-chr18-20699459-2	chr18	20698974	20699974	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-34214.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	73.22	91.7	64.75	75.57	50.85	53.85	92.94	75.61	48.09
Merged-chr6-72162747-1	chr6	72162247	72163247	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39550.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	164.75	182.01	130.42	185.55	144.15	151.11	175.33	200.74	92.43
Merged-chr4-132768690-1	chr4	132768190	132769190	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011284, exon 2 of 9)	exon (NM_011284, exon 2 of 9)	330.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	87.52	57.14	57.35	78.94	53.18	41.8	61.26	62.79	39.35
Merged-chr4-66768937-1	chr4	66768437	66769437	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58614.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	4.58	3.69	0.0	2.02	7.93	1.61	7.39	1.77	2.5
Merged-chr9-66916637-2	chr9	66916127	66917127	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	3078.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	60.64	54.37	55.5	43.86	20.53	54.66	53.87	49.52	58.71
Merged-chr7-144938244-3	chr7	144937736	144938736	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	1689.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	66.93	80.18	68.45	76.92	80.71	81.99	86.61	113.64	43.09
Merged-chr2-150875579-1	chr2	150875079	150876079	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	RLTR25B|LTR|ERVK	29152.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	42.9	36.86	37.92	39.81	34.06	41.8	52.81	38.03	23.73
Merged-chr8-47917230-1	chr8	47916730	47917730	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	73321.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	5.72	5.53	5.55	6.75	2.33	6.43	3.17	4.86	2.5
Merged-chr13-45378893-1	chr13	45378393	45379393	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10849.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.72	6.45	3.7	3.37	1.87	1.61	4.22	3.1	0.0
Merged-chr16-24655338-1	chr16	24654838	24655838	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-66517.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	15.45	12.9	25.9	13.49	15.86	16.88	13.73	9.29	12.49
Merged-chr6-82777083-3	chr6	82776568	82777568	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2614.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	9.15	6.91	1.85	10.12	2.8	2.41	12.67	9.73	8.12
Merged-chr11-46775399-1	chr11	46774899	46775899	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166631, intron 6 of 7)	intron (NM_001166631, intron 6 of 7)	24231.0	NM_134248	171283.0	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	8.01	5.99	2.77	16.87	15.39	17.68	15.84	7.07	9.99
Merged-chr2-142700940-1	chr2	142700440	142701440	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	200524.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	8.01	8.75	4.62	3.37	8.86	12.86	5.28	11.05	5.62
Merged-chr2-150897236-3	chr2	150896742	150897742	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	B1_Mur4|SINE|Alu	7489.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	84.66	97.69	51.8	83.66	79.31	81.99	90.83	70.3	56.21
Merged-chr2-73037441-1	chr2	73036941	73037941	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56995.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	8.58	6.91	3.7	27.66	23.79	28.13	25.35	28.74	12.49
Merged-chr9-25484014-1	chr9	25483514	25484514	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	2417.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	24.03	28.57	7.4	18.22	18.66	8.04	33.8	26.53	11.24
Merged-chr19-34473259-1	chr19	34472759	34473759	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009890)	TTS (NM_009890)	1876.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	10.3	2.3	0.0	3.37	3.27	0.0	2.11	8.4	4.37
Merged-chr16-35462373-1	chr16	35461873	35462873	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028295, intron 3 of 16)	intron (NM_028295, intron 3 of 16)	28500.0	NM_028295	72599.0	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	2.86	1.38	4.62	1.35	1.87	3.22	5.28	3.1	1.25
Merged-chr6-89281690-3	chr6	89281155	89282155	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131021, intron 1 of 3)	intron (NR_131021, intron 1 of 3)	4070.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	65.79	78.33	91.57	87.04	75.11	101.28	73.93	72.52	81.81
Merged-chr5-35362028-1	chr5	35361528	35362528	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046060, exon 1 of 4)	non-coding (NR_046060, exon 1 of 4)	475.0	NR_046060	74429.0	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	0.57	0.92	1.85	0.67	1.4	8.04	3.17	0.0	1.25
Merged-chr4-129854148-1	chr4	129853648	129854648	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	33440.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	38.9	29.03	35.15	35.76	28.46	28.13	39.08	34.49	34.35
Merged-chr13-105198193-1	chr13	105197693	105198693	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	Lx2|LINE|L1	94821.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	1.72	2.3	1.85	2.7	5.6	3.22	2.11	8.4	1.25
Merged-chr14-48130983-1	chr14	48130483	48131483	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	10114.0	NM_033602	93834.0	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	13.16	18.89	7.4	26.31	30.32	39.39	3.17	2.65	9.37
Merged-chr5-31699610-1	chr5	31699110	31700110	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181280, intron 1 of 12)	intron (NM_181280, intron 1 of 12)	1560.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	44.62	34.56	23.12	26.99	35.92	21.7	58.09	38.47	32.48
Merged-chr3-146583678-1	chr3	146583178	146584178	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019957, intron 6 of 6)	intron (NM_019957, intron 6 of 6)	-13471.0	NM_009474	22262.0	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	30.89	29.03	8.32	47.23	48.98	31.35	17.96	13.71	15.61
Merged-chr4-126321133-1	chr4	126320633	126321633	+	699.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011902)	TTS (NM_011902)	570.0	NM_133883	100206.0	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	135.0	105.98	66.6	119.43	108.7	106.1	107.73	93.74	59.33
Merged-chr2-93334027-1	chr2	93333527	93334527	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183180, intron 1 of 9)	CpG	460.0	NM_183180	241556.0	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	16.59	4.61	12.95	24.29	7.93	13.66	17.96	7.07	2.5
Merged-chr1-55237904-2	chr1	55237488	55238488	+	699.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175439, exon 1 of 1)	exon (NM_175439, exon 1 of 1)	811.0	NM_175439	212679.0	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	17.16	10.14	5.55	25.64	17.26	16.88	14.79	16.8	13.74
Merged-chr5-8051526-1	chr5	8051026	8052026	+	699.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025618, intron 1 of 7)	T-rich|Low_complexity|Low_complexity	-5016.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	4.58	2.3	3.7	4.05	1.87	2.41	2.11	3.54	0.0
Merged-chr1-165187531-3	chr1	165187024	165188024	+	698.916687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151712, intron 3 of 8)	intron (NR_151712, intron 3 of 8)	6909.0	NM_145512	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	14.3	6.45	12.95	18.22	10.26	9.65	28.52	38.03	20.61
Merged-chr1-53791769-3	chr1	53791268	53792268	+	698.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6553.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	12.01	11.52	14.8	20.92	13.53	18.49	14.79	6.19	14.36
Merged-chr13-116712448-2	chr13	116711960	116712960	+	698.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	125718.0	NR_153406	74680.0	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	1.72	0.92	0.0	4.72	2.33	1.61	2.11	1.33	1.25
Merged-chr13-107928038-2	chr13	107927531	107928531	+	698.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37967.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	4.58	4.15	0.0	2.02	4.67	5.63	3.17	5.75	3.75
Merged-chr11-69129897-2	chr11	69129410	69130410	+	698.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011786, intron 4 of 14)	intron (NM_011786, intron 4 of 14)	3533.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	18.88	10.14	25.9	2.7	5.13	5.63	17.96	9.29	11.24
Merged-chr6-8663115-2	chr6	8662605	8663605	+	698.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252266, intron 7 of 11)	intron (NM_001252266, intron 7 of 11)	95353.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	5.15	8.75	0.0	2.7	4.2	4.82	4.22	1.33	5.0
Merged-chr8-105715223-3	chr8	105714724	105715724	+	698.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_027469)	TTS (NM_027469)	6935.0	NM_027655	71046.0	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	6.86	8.75	15.72	16.19	7.0	14.47	2.11	6.63	13.12
Merged-chr10-116513467-3	chr10	116512999	116513999	+	698.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	14450.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	15.45	12.44	7.4	22.94	15.39	14.47	15.84	11.5	11.24
Merged-chr5-105526756-2	chr5	105526252	105527252	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 1 of 3)	intron (NM_133897, intron 1 of 3)	7281.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	23.45	14.75	18.5	37.78	13.53	24.92	4.22	3.54	3.75
Merged-chr13-113693596-2	chr13	113693113	113694113	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29937.0	NM_019960	56534.0	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	3.43	4.61	0.0	6.07	2.8	1.61	3.17	1.33	2.5
Merged-chr7-101061294-2	chr7	101060827	101061827	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47448.0	NM_001146010	207278.0	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	27.46	19.81	23.12	41.16	33.12	21.7	28.52	23.43	12.49
Merged-chr4-74311328-2	chr4	74310836	74311836	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	59457.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	36.04	55.75	24.05	29.01	46.18	32.15	45.42	34.05	24.98
Merged-chr3-41390041-2	chr3	41389522	41390522	+	698.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103177.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.0	3.69	7.4	3.37	1.87	6.43	4.22	0.88	3.75
Merged-chr1-165198180-3	chr1	165197611	165198611	+	698.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3673.0	NR_151712	108735.0	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	8.01	6.91	3.7	3.37	3.73	6.43	4.22	7.07	5.0
Merged-chrX-159650238-3	chrX	159649730	159650730	+	698.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	22958.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	46.91	41.93	40.7	73.54	65.78	90.02	70.76	48.64	34.97
Merged-chr19-21174214-2	chr19	21173704	21174704	+	698.708374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	69494.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	2.86	8.29	11.1	6.07	3.73	12.86	6.34	3.98	2.5
Merged-chrX-12077497-3	chrX	12076946	12077946	+	698.674622	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	3107.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	14.3	6.45	1.85	19.57	13.53	14.47	10.56	5.31	2.5
Merged-chr13-60178626-3	chr13	60178145	60179145	+	698.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110.0	NM_008086	14451.0	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	1.72	0.46	3.7	6.75	3.73	3.22	8.45	0.44	1.87
Merged-chr6-128854233-3	chr6	128853742	128854742	+	698.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	intron (NM_001254946, intron 2 of 2)	-27927.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.86	8.75	2.77	6.75	3.73	7.23	4.22	6.19	2.5
Merged-chr11-40857674-2	chr11	40857150	40858150	+	698.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-102364.0	NM_009831	12450.0	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	14.87	8.29	8.32	10.8	9.8	3.22	4.22	0.44	6.25
Merged-chr6-115989252-2	chr6	115988737	115989737	+	698.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	5768.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	8.01	7.37	1.85	6.75	1.87	0.0	6.34	1.33	1.25
Merged-chr2-153081373-2	chr2	153080865	153081865	+	698.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145536, exon 9 of 9)	3' UTR (NM_145536, exon 9 of 9)	15410.0	NM_145536	228788.0	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	17.16	8.29	7.4	6.75	1.4	8.04	11.62	7.96	14.99
Merged-chr3-105000846-3	chr3	105000342	105001342	+	698.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39133.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	25.74	12.9	12.95	17.54	9.33	14.47	16.9	11.94	13.74
Merged-chr18-65687234-3	chr18	65686680	65687680	+	698.565063	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207255, exon 6 of 6)	exon (NM_207255, exon 6 of 6)	-11088.0	NM_177028	319888.0	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	45.19	58.52	71.22	46.56	40.12	24.11	48.58	61.9	49.96
Merged-chr16-55519846-3	chr16	55519336	55520336	+	698.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25105.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	8.58	2.76	1.85	4.72	2.8	0.8	5.28	3.1	1.87
Merged-chr3-52262638-3	chr3	52262134	52263134	+	698.544434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5703.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.15	0.92	3.7	8.77	0.0	4.82	3.17	3.98	1.25
Merged-chr7-46993270-3	chr7	46992742	46993742	+	698.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175318, exon 6 of 6)	3' UTR (NM_175318, exon 6 of 6)	15172.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	10.3	18.89	20.35	23.62	16.79	9.65	26.4	20.34	32.48
Merged-chr19-26607947-1	chr19	26607447	26608447	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011416, intron 1 of 32)	intron (NM_011416, intron 1 of 32)	2787.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	36.04	18.89	14.8	41.83	19.59	22.51	20.07	15.03	4.37
Merged-chr10-80831340-2	chr10	80830825	80831825	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	2528.0	NR_035503	100316778.0		NR_035503	ENSMUSG00000087993	Mir1982	mir-1982|mmu-mir-1982	microRNA 1982	ncRNA	2.29	2.76	1.85	7.42	0.93	8.04	3.17	2.21	9.99
Merged-chr2-158305920-1	chr2	158305420	158306420	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008489)	promoter-TSS (NM_008489)	-573.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	109.26	81.1	61.97	75.57	62.51	36.97	142.59	111.43	38.72
Merged-chr2-65342262-2	chr2	65341769	65342769	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177074, intron 7 of 11)	intron (NM_177074, intron 7 of 11)	21757.0	NM_177074	320106.0	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	4.0	2.76	1.85	1.35	1.4	1.61	5.28	1.33	2.5
Merged-chr17-67348689-3	chr17	67348176	67349176	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MER5A|DNA|hAT-Charlie	5783.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	105.83	119.34	106.37	124.15	115.23	121.37	111.96	121.6	108.67
Merged-chr9-55392491-2	chr9	55391995	55392995	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 3 of 10)	intron (NM_172923, intron 3 of 10)	65582.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	2.29	3.69	0.0	5.4	1.87	3.22	1.06	0.0	2.5
Merged-chr15-103455118-1	chr15	103454618	103455618	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 2 of 30)	intron (NM_153505, intron 2 of 30)	1293.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	20.59	33.18	10.17	25.64	21.93	32.96	31.69	34.93	24.98
Merged-chr3-31091335-1	chr3	31090835	31091835	+	698.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3723.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	16.02	5.53	3.7	4.05	7.46	12.86	11.62	12.82	12.49
Merged-chr12-28713384-1	chr12	28712884	28713884	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 5 of 11)	intron (NM_001161410, intron 5 of 11)	34059.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	16.02	8.75	12.02	10.8	7.0	22.51	1.06	0.88	5.62
Merged-chr17-63871150-2	chr17	63870641	63871641	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	B4A|SINE|B4	-6925.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	26.89	29.49	36.07	33.06	30.79	32.15	46.47	45.99	26.85
Merged-chrX-56404779-3	chrX	56404287	56405287	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30270.0	NM_183030	320237.0	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	protein-coding	0.0	0.0	2.77	2.7	1.87	0.0	1.06	0.44	0.0
Merged-chr10-98893778-3	chr10	98893284	98894284	+	698.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20858.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	36.61	42.85	36.07	65.45	47.12	39.39	43.3	48.64	16.24
Merged-chr3-107120104-1	chr3	107119604	107120604	+	698.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18537.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	15.45	5.07	6.47	26.31	26.12	10.45	35.91	27.86	22.48
Merged-chr7-122308096-1	chr7	122307596	122308596	+	698.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	18971.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	9.15	5.07	6.47	2.7	3.27	11.25	9.51	7.96	8.74
Merged-chr11-78349853-3	chr11	78349415	78350415	+	698.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011676)	TTS (NM_011676)	3205.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	17.73	6.45	17.57	10.8	6.06	7.23	9.51	13.27	8.74
Merged-chr8-47553863-2	chr8	47553368	47554368	+	698.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	20223.0	NM_203507	192174.0	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	7.44	2.3	7.4	1.35	4.67	1.61	5.28	0.0	3.75
Merged-chrX-23565745-2	chrX	23565253	23566253	+	698.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127298.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	2.29	2.76	0.0	1.35	1.4	3.22	1.06	0.0	0.62
Merged-chr10-41576046-3	chr10	41575543	41576543	+	698.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_045341, exon 3 of 4)	non-coding (NR_045341, exon 3 of 4)	8027.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	16.02	10.14	8.32	10.12	0.93	1.61	19.01	7.52	7.49
Merged-chr2-13432187-2	chr2	13431694	13432694	+	698.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081084, intron 22 of 66)	intron (NM_001081084, intron 22 of 66)	59682.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	2.86	2.3	0.0	3.37	3.73	1.61	1.06	4.42	3.75
Merged-chr10-67625589-2	chr10	67625131	67626131	+	698.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-53672.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	25.74	19.35	9.25	22.27	21.46	24.11	14.79	11.94	26.85
Merged-chr5-52116044-1	chr5	52115544	52116544	+	698.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	19973.0	NR_105845	102466648.0		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	4.0	5.53	2.77	5.4	2.33	3.22	1.06	1.77	0.0
Merged-chr6-51546305-3	chr6	51545824	51546824	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	intron (NM_001361577, intron 1 of 6)	1031.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	35.47	18.43	46.25	26.31	11.2	15.27	60.2	45.1	18.11
Merged-chr12-51695188-3	chr12	51694708	51695708	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-3294.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	48.05	71.88	33.3	45.88	51.78	64.3	49.64	56.16	54.96
Merged-chr10-78028299-3	chr10	78027790	78028790	+	698.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13997.0	NM_001081695	54427.0	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	2.86	1.84	3.7	3.37	0.47	3.22	1.06	1.77	2.5
Merged-chr16-81462864-1	chr16	81462364	81463364	+	698.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113208, intron 7 of 17)	L1Md_F2|LINE|L1	262167.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.0	3.23	1.85	4.05	1.87	1.61	2.11	0.88	6.25
Merged-chr12-76822420-2	chr12	76821915	76822915	+	698.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_134050, exon 1 of 7)	5' UTR (NM_134050, exon 1 of 7)	109.0	NM_134050	104886.0	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.0	1.38	0.0	2.7	1.87	4.82	2.11	0.44	3.75
Merged-chr13-41550734-3	chr13	41550250	41551250	+	698.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	-55466.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	58.35	64.51	60.12	49.93	41.52	67.52	85.55	53.06	61.83
Merged-chr13-29959210-2	chr13	29958711	29959711	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	MTC|LTR|ERVL-MaLR	25180.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	9.15	10.6	8.32	3.37	4.67	8.84	6.34	8.4	9.37
Merged-chr6-134052068-3	chr6	134051560	134052560	+	698.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	16360.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	18.88	17.05	25.9	24.29	12.13	15.27	17.96	11.05	14.99
Merged-chr15-80254376-2	chr15	80253880	80254880	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001287180)	promoter-TSS (NM_001287180)	-804.0	NM_001287180	11911.0	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	151.59	149.75	163.72	165.98	132.02	143.88	160.54	216.22	98.05
Merged-chr2-26493580-2	chr2	26493045	26494045	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	10277.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	144.16	116.58	134.12	134.94	80.24	83.59	122.52	114.08	100.55
Merged-chr2-155757443-2	chr2	155756932	155757932	+	698.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6215.0	NM_011171	19124.0	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	25.17	21.66	27.75	2.02	2.33	0.0	59.15	52.62	33.1
Merged-chr2-151536069-2	chr2	151535586	151536586	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6397.0	NR_126058	14225.0	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	14.3	11.52	6.47	15.52	11.2	26.53	11.62	10.17	21.86
Merged-chrX-36050469-2	chrX	36049969	36050969	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001009947, intron 44 of 52)	intron (NM_001009947, intron 44 of 52)	-61639.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	6.86	7.37	7.4	5.4	4.2	6.43	4.22	5.31	11.24
Merged-chr9-100525395-2	chr9	100524893	100525893	+	698.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	L1M4c|LINE|L1	-18537.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	9.15	10.6	12.95	7.42	10.26	6.43	7.39	7.96	6.25
Merged-chr9-44454330-2	chr9	44453829	44454829	+	698.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009476, intron 1 of 4)	intron (NM_009476, intron 1 of 4)	438.0	NM_009476	22269.0	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	10.3	2.76	0.0	4.05	2.8	1.61	3.17	3.1	2.5
Merged-chr6-24627832-3	chr6	24627347	24628347	+	698.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 5 of 10)	intron (NM_028459, intron 5 of 10)	30076.0	NM_053098	93677.0	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	6.29	2.3	7.4	5.4	2.33	1.61	4.22	6.63	3.12
Merged-chr4-134124241-5	chr4	134123769	134124769	+	698.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045571, intron 10 of 13)	intron (NR_045571, intron 10 of 13)	4484.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	3.43	3.69	6.47	4.72	0.0	2.41	8.45	5.31	3.75
Merged-chr19-55098743-3	chr19	55098209	55099209	+	698.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356285, intron 3 of 22)	intron (NM_001356285, intron 3 of 22)	768.0	NM_008149	14732.0	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	29.17	35.02	21.27	51.95	40.12	41.8	69.71	51.73	26.23
Merged-chr18-75716329-3	chr18	75715829	75716829	+	698.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18633.0	NM_201354	269037.0	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.86	1.84	0.0	0.67	2.33	3.22	0.0	2.65	1.25
Merged-chr11-59787660-2	chr11	59787176	59788176	+	698.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_110894)	promoter-TSS (NR_110894)	-19.0	NM_001290283	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	7.44	1.84	0.0	2.02	1.87	4.82	3.17	0.88	0.0
Merged-chr11-9531059-3	chr11	9530555	9531555	+	698.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 45 of 61)	intron (NM_178259, intron 45 of 61)	339113.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	27.46	19.35	33.3	26.99	14.46	22.51	39.08	40.68	45.59
Merged-chr11-18877670-2	chr11	18877173	18878173	+	698.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141296.0	NM_001193271	17268.0	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	2.86	2.3	0.0	0.67	0.93	1.61	0.0	1.33	5.0
Merged-chr1-80191856-2	chr1	80191354	80192354	+	698.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	22090.0	NM_173425	241128.0	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	8.58	7.37	5.55	10.12	5.13	0.0	4.22	1.77	4.37
Merged-chr2-167067745-3	chr2	167067246	167068246	+	698.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2453.0	NR_028540	100217443.0		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	9.15	9.68	6.47	12.14	6.06	11.25	6.34	7.52	9.37
Merged-chr6-116439710-2	chr6	116439216	116440216	+	698.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 3 of 13)	intron (NM_009662, intron 3 of 13)	21462.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	24.03	18.89	4.62	23.62	26.12	28.13	15.84	14.15	13.12
Merged-chr6-38254280-3	chr6	38253748	38254748	+	698.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_194061)	promoter-TSS (NM_194061)	-239.0	NM_194061	330286.0	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	2.86	1.84	1.85	4.05	0.47	3.22	2.11	1.77	3.75
Merged-chr3-144401450-1	chr3	144400950	144401950	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	168766.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	7.44	1.84	5.55	7.42	3.27	11.25	12.67	6.19	6.25
Merged-chr16-44121068-1	chr16	44120568	44121568	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	18191.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	137.86	101.83	87.87	136.29	95.63	90.02	130.97	111.43	47.46
Merged-chr16-45967675-1	chr16	45967175	45968175	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152226, intron 2 of 2)	intron (NR_152226, intron 2 of 2)	22069.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	1.14	4.61	6.47	8.1	2.33	0.0	2.11	3.98	6.25
Merged-chr16-75906908-1	chr16	75906408	75907408	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	2358.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	14.3	6.45	7.4	11.47	6.06	4.82	13.73	11.5	3.75
Merged-chr11-120887367-1	chr11	120886867	120887867	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	45505.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	8.01	4.15	1.85	7.42	5.13	4.02	6.34	3.98	2.5
Merged-chr1-56977310-2	chr1	56976826	56977826	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358580, intron 1 of 11)	CpG	1324.0	NM_001358581	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	1.72	0.92	0.0	2.7	1.4	1.61	6.34	2.21	3.75
Merged-chr2-72197233-1	chr2	72196733	72197733	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 8 of 26)	intron (NM_001355478, intron 8 of 26)	-88404.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.86	7.37	1.85	2.7	2.8	1.61	20.07	15.03	8.74
Merged-chr16-49856868-1	chr16	49856368	49857368	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1214.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	236.26	266.79	153.54	251.67	209.0	185.68	331.64	414.31	120.53
Merged-chr2-135488499-1	chr2	135487999	135488999	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	94721.0	NR_015544	320684.0	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	5.72	3.69	7.4	2.02	1.4	5.63	1.06	1.33	0.0
Merged-chr8-107587786-1	chr8	107587286	107588286	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010817, intron 1 of 6)	intron (NM_010817, intron 1 of 6)	696.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	101.83	136.39	90.65	87.71	147.88	71.54	97.17	107.89	72.45
Merged-chr7-118821460-2	chr7	118820931	118821931	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 26 of 30)	intron (NM_027815, intron 26 of 30)	34182.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	14.87	17.05	25.9	18.22	12.13	25.72	19.01	9.29	10.62
Merged-chr5-149242646-1	chr5	149242146	149243146	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22358.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	45.19	44.7	28.67	29.69	25.19	48.23	39.08	29.63	44.34
Merged-chr14-52190871-1	chr14	52190371	52191371	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	6368.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	5.72	3.69	3.7	7.42	3.73	5.63	9.51	3.54	13.12
Merged-chr9-40344927-1	chr9	40344427	40345427	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	1318.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	13.73	9.22	6.47	9.45	12.6	8.84	12.67	3.1	3.12
Merged-chr5-102537915-1	chr5	102537415	102538415	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	56524.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	6.29	1.38	11.1	3.37	2.33	2.41	2.11	0.88	4.37
Merged-chr2-118126111-1	chr2	118125611	118126611	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011580, exon 22 of 22)	3' UTR (NM_011580, exon 22 of 22)	14235.0	NM_001313914	21825.0	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	26.31	21.66	20.35	16.87	10.73	18.49	14.79	13.71	16.24
Merged-chr12-84752830-1	chr12	84752330	84753330	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20282.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	167.61	164.04	167.42	149.79	145.08	121.37	153.15	144.59	73.69
Merged-chr17-84120154-1	chr17	84119654	84120654	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41494.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	24.6	21.66	20.35	22.27	22.39	23.31	17.96	16.36	15.61
Merged-chr16-73650569-2	chr16	73650063	73651063	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	691504.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	5.15	5.53	0.0	15.52	7.0	13.66	9.51	5.31	5.0
Merged-chr1-53870911-1	chr1	53870411	53871411	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	MTB_Mm|LTR|ERVL-MaLR	21487.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	14.87	16.13	24.05	16.87	14.46	20.9	10.56	11.05	20.61
Merged-chr11-77355526-1	chr11	77355026	77356026	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	7246.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	48.05	61.75	22.2	72.19	41.99	47.42	41.19	69.42	44.97
Merged-chrX-167207943-3	chrX	167207425	167208425	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021278, intron 2 of 2)	intron (NM_021278, intron 2 of 2)	1293.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	57.21	77.41	75.85	57.35	44.32	61.09	57.03	73.84	43.09
Merged-chr2-120967631-1	chr2	120967131	120968131	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009461, intron 1 of 46)	L2|LINE|L2	3084.0	NM_009461	22222.0	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	24.6	25.34	24.05	33.74	19.59	17.68	5.28	4.42	11.24
Merged-chr7-67546477-1	chr7	67545977	67546977	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	L1MC4a|LINE|L1	98759.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	2.86	5.99	7.4	2.02	0.93	6.43	4.22	1.77	5.0
Merged-chr15-35664200-1	chr15	35663700	35664700	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 30 of 61)	intron (NM_177151, intron 30 of 61)	-3153.0	NR_030606	100124469.0		NR_030606	ENSMUSG00000077890	Mir875	Mirn875|mir-875|mmu-mir-875	microRNA 875	ncRNA	6.29	6.45	0.0	2.7	4.2	6.43	3.17	6.63	5.0
Merged-chr12-111157810-2	chr12	111157312	111158312	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8558.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	9.72	5.07	3.7	7.42	4.67	0.0	2.11	6.19	6.25
Merged-chr4-46565242-3	chr4	46564694	46565694	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178893, intron 1 of 12)	intron (NM_178893, intron 1 of 12)	1246.0	NM_178893	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	122.99	114.74	120.24	138.32	90.97	132.63	78.16	77.38	41.22
Merged-chr14-50784574-2	chr14	50784057	50785057	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360545, intron 1 of 8)	intron (NM_001360545, intron 1 of 8)	963.0	NM_177625	219022.0	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	22.88	30.87	20.35	20.24	25.66	17.68	31.69	23.88	14.36
Merged-chr5-123720506-1	chr5	123720006	123721006	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027494, intron 1 of 13)	CpG	538.0	NM_027494	70650.0	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	60.07	66.81	63.82	68.82	58.78	80.38	124.63	102.14	49.34
Merged-chr4-95206889-1	chr4	95206389	95207389	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154667.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.0	3.69	9.25	6.75	4.2	11.25	1.06	3.1	5.0
Merged-chr13-94476409-1	chr13	94475909	94476909	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009680, intron 17 of 26)	intron (NM_009680, intron 17 of 26)	117449.0	NM_009680	11774.0	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	9.15	3.69	8.32	11.47	5.13	8.04	6.34	3.98	2.5
Merged-chr2-130851671-1	chr2	130851171	130852171	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11526.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	6.29	2.76	1.85	7.42	9.33	3.22	5.28	1.33	3.75
Merged-chr13-49193223-1	chr13	49192723	49193723	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013610, intron 1 of 3)	intron (NM_013610, intron 1 of 3)	5676.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	52.63	56.22	54.57	52.63	46.65	70.73	66.54	58.37	46.84
Merged-chr2-164523610-1	chr2	164523110	164524110	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	26085.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	27.46	24.42	5.55	36.43	21.93	23.31	8.45	12.38	5.0
Merged-chr2-28681830-1	chr2	28681330	28682330	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289575, intron 19 of 22)	intron (NM_001289575, intron 19 of 22)	17821.0	NM_027283	69987.0	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	2.86	4.61	9.25	3.37	2.33	4.02	3.17	4.86	4.37
Merged-chr2-164670464-1	chr2	164669964	164670964	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161806, intron 1 of 4)	intron (NM_001161806, intron 1 of 4)	3623.0	NM_001161806	629761.0	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	7.44	6.91	7.4	20.92	7.0	11.25	21.12	18.13	14.36
Merged-chr15-37696446-1	chr15	37695946	37696946	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	-15872.0	NM_001359839	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.57	0.92	11.1	2.02	2.8	3.22	2.11	3.98	0.0
Merged-chr6-72022075-1	chr6	72021575	72022575	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046180, intron 1 of 2)	Lx3_Mus|LINE|L1	20453.0	NR_046180	330350.0	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.43	5.07	1.85	5.4	1.87	3.22	8.45	3.98	4.37
Merged-chr19-12026811-1	chr19	12026311	12027311	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9929.0	NM_146680	258675.0	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	5.72	5.53	15.72	9.45	8.4	1.61	4.22	7.07	5.0
Merged-chr1-171501711-2	chr1	171501188	171502188	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1790.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	12.59	11.98	16.65	4.72	5.13	5.63	5.28	7.52	9.37
Merged-chr16-33372787-1	chr16	33372287	33373287	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	7949.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	20.02	17.51	15.72	23.62	15.86	20.9	19.01	15.03	21.86
Merged-chr13-9430155-1	chr13	9429655	9430655	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	153630.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	82.38	92.62	69.37	70.17	64.38	41.8	80.27	104.35	29.35
Merged-chr2-127376285-1	chr2	127375785	127376785	+	698.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12999.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	7.44	5.99	11.1	10.8	2.33	11.25	24.29	19.01	29.35
Merged-chr7-33876100-1	chr7	33875600	33876600	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20A|LTR|ERVK	68885.0	NM_178308	110187.0	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	3.43	4.15	0.0	2.7	1.4	2.41	4.22	0.88	3.75
Merged-chr4-136808754-1	chr4	136808254	136809254	+	698.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010142, intron 1 of 15)	intron (NM_010142, intron 1 of 15)	27258.0	NM_001290753	13844.0	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	4.0	3.23	0.0	4.72	2.33	0.0	1.06	2.21	6.25
Merged-chr13-90051882-1	chr13	90051382	90052382	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028012, intron 3 of 7)	RLTR18-int|LTR|ERVK	37726.0	NM_028012	108138.0	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	2.86	2.76	0.92	4.05	7.0	0.0	1.06	2.65	2.5
Merged-chr14-27315583-1	chr14	27315083	27316083	+	698.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-20454.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.86	4.61	4.62	8.77	2.8	8.04	5.28	3.98	4.37
Merged-chr19-8818676-3	chr19	8818138	8819138	+	697.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081196)	promoter-TSS (NM_001081196)	656.0	NM_027412	70387.0	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	173.9	135.47	78.62	124.15	128.76	111.73	119.35	168.02	99.92
Merged-chr18-62183844-3	chr18	62183342	62184342	+	697.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013754, intron 1 of 1)	intron (NM_001013754, intron 1 of 1)	3742.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	29.75	27.65	24.05	25.64	12.13	16.88	16.9	20.78	21.86
Merged-chr6-51580481-3	chr6	51579975	51580975	+	697.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 5 of 6)	intron (NM_001361577, intron 5 of 6)	35182.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	1.14	0.92	3.7	5.4	0.93	3.22	2.11	1.33	2.5
Merged-chr19-29370267-3	chr19	29369742	29370742	+	697.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	2804.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	46.34	61.28	35.15	30.36	16.33	40.99	71.82	62.35	38.72
Merged-chr2-131088627-2	chr2	131088126	131089126	+	697.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1861.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	40.62	76.49	72.15	51.95	51.32	102.88	79.21	82.24	76.19
Merged-chr7-47053486-3	chr7	47052993	47053993	+	697.888916	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026436, exon 3 of 3)	exon (NM_026436, exon 3 of 3)	2853.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	42.33	58.98	67.52	59.38	64.84	121.37	118.29	87.55	72.45
Merged-chr9-57629450-3	chr9	57628952	57629952	+	697.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304761, intron 7 of 14)	intron (NM_001304761, intron 7 of 14)	-8678.0	NM_199222	235416.0	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	12.59	3.69	1.85	4.72	2.33	10.45	7.39	3.98	8.74
Merged-chr1-88745440-3	chr1	88744937	88745937	+	697.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9453.0	NR_040493	78650.0	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	6.86	5.53	5.55	2.02	4.2	1.61	4.22	2.65	2.5
Merged-chr11-80174231-3	chr11	80173691	80174691	+	697.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 8 of 10)	intron (NM_172133, intron 8 of 10)	-9681.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	63.5	67.27	65.67	52.63	36.85	60.28	72.88	75.17	56.83
Merged-chr2-33887700-2	chr2	33887185	33888185	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_175184, exon 1 of 10)	5' UTR (NM_175184, exon 1 of 10)	261.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	10.87	5.53	12.95	38.46	32.19	49.03	49.64	19.46	14.99
Merged-chr1-133046090-2	chr1	133045585	133046585	+	697.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001099276)	promoter-TSS (NM_001099276)	73.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	9.72	2.3	3.7	6.75	3.27	5.63	6.34	2.21	2.5
Merged-chr12-72310314-2	chr12	72309819	72310819	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	-73592.0	NM_001007596	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	4.0	1.38	3.7	2.02	3.73	3.22	11.62	4.42	8.12
Merged-chr7-101503992-2	chr7	101503473	101504473	+	697.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001143849, exon 15 of 30)	exon (NM_001143849, exon 15 of 30)	28597.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	9.15	11.98	3.7	8.1	2.8	12.06	12.67	7.52	5.62
Merged-chr3-14874611-3	chr3	14874126	14875126	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11088.0	NM_007606	12350.0	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	3.43	4.61	4.62	0.67	1.4	1.61	2.11	1.33	1.87
Merged-chr18-13787071-3	chr18	13786518	13787518	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360804, intron 5 of 7)	intron (NM_001360804, intron 5 of 7)	185715.0	NM_001360804	225207.0	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	18.31	16.59	16.65	24.96	14.46	3.22	13.73	12.38	5.62
Merged-chr8-46311344-3	chr8	46310817	46311817	+	697.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-16646.0	NM_173789	234219.0	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	4.58	1.38	3.7	1.35	4.2	1.61	3.17	3.1	3.75
Merged-chr3-104403859-3	chr3	104403371	104404371	+	697.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108047.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.43	3.69	5.55	8.1	3.27	5.63	3.17	3.98	2.5
Merged-chr11-5945301-2	chr11	5944807	5945807	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010292, intron 1 of 9)	intron (NM_010292, intron 1 of 9)	4774.0	NM_010292	103988.0	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	4.58	5.53	1.85	8.1	3.73	8.04	3.17	3.98	4.37
Merged-chr7-30279391-2	chr7	30278847	30279847	+	697.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_144498)	promoter-TSS (NR_144498)	-747.0	NR_144498	108167416.0	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	26.89	27.65	27.75	31.71	38.25	47.42	30.63	26.53	23.11
Merged-chr1-151614730-2	chr1	151614220	151615220	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	43347.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	88.1	89.85	49.95	75.57	75.57	86.01	81.33	87.99	59.95
Merged-chr3-88721139-2	chr3	88720631	88721631	+	697.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028056, intron 3 of 5)	RSINE1|SINE|B4	4277.0	NR_028056	19769.0	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	65.21	70.96	57.35	67.47	48.05	32.15	101.39	104.35	40.59
Merged-chr14-60443968-2	chr14	60443474	60444474	+	697.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	65688.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	20.59	44.24	49.95	24.96	41.05	43.4	63.37	49.96	31.85
Merged-chr5-137823398-3	chr5	137822917	137823917	+	697.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001005426)	TTS (NM_001005426)	12861.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	29.75	30.87	29.6	28.34	20.06	36.97	25.35	16.36	27.48
Merged-chr2-43902804-3	chr2	43902297	43903297	+	697.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 6 of 14)	intron (NM_001301831, intron 6 of 14)	153973.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	1.14	2.76	3.7	5.4	4.2	1.61	3.17	6.63	1.87
Merged-chr5-135912633-3	chr5	135912149	135913149	+	697.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018871, intron 1 of 1)	intron (NM_018871, intron 1 of 1)	21992.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	104.69	65.43	57.35	135.62	84.9	110.12	106.67	80.47	52.46
Merged-chr7-98671691-2	chr7	98671172	98672172	+	697.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15103.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	50.91	49.76	31.45	74.89	57.38	90.83	43.3	33.16	56.83
Merged-chr2-120563161-2	chr2	120562639	120563639	+	697.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	720.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	169.33	161.74	141.52	174.75	128.29	124.59	227.08	283.43	149.26
Merged-chr19-10846248-3	chr19	10845777	10846777	+	697.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023044, intron 1 of 7)	intron (NM_023044, intron 1 of 7)	3733.0	NM_023044	65221.0	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	38.33	27.19	34.22	31.71	18.19	20.9	47.53	37.14	29.35
Merged-chr11-79286526-3	chr11	79286024	79287024	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31829.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	66.93	67.27	71.22	81.64	49.45	81.99	91.89	104.35	74.94
Merged-chr4-130841188-3	chr4	130840705	130841705	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48668.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	20.59	11.98	23.12	12.14	21.93	33.76	12.67	11.5	14.36
Merged-chr6-41191151-3	chr6	41190652	41191652	+	697.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111120.0	NM_011646	22074.0	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	2.86	6.91	1.85	4.05	5.6	0.0	5.28	5.31	5.0
Merged-chr19-4310046-3	chr19	4309554	4310554	+	697.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3832.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	10.3	6.45	12.02	10.12	2.33	6.43	8.45	3.98	3.75
Merged-chr4-45941895-3	chr4	45941393	45942393	+	697.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198660, exon 32 of 38)	exon (NM_198660, exon 32 of 38)	-23442.0	NM_001290475	100121.0	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	6.86	3.69	5.55	7.42	3.27	1.61	6.34	3.1	2.5
Merged-chr2-84476801-1	chr2	84476301	84477301	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177320)	promoter-TSS (NM_001177320)	-26.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	13.16	11.06	10.17	16.87	12.13	13.66	24.29	12.38	15.61
Merged-chr6-134141475-2	chr6	134140964	134141964	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	105764.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.59	17.51	11.1	12.14	9.33	12.06	6.34	5.31	9.37
Merged-chr1-98591221-2	chr1	98590722	98591722	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAP1-MM_I-int|LTR|ERVK	170098.0	NM_027584	70866.0	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	1.72	0.92	3.7	4.72	2.33	4.02	0.0	0.0	1.87
Merged-chr17-35267709-2	chr17	35267208	35268208	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010380)	TTS (NM_010380)	4585.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	16.59	6.45	20.35	12.14	3.73	6.43	7.39	3.98	8.74
Merged-chr1-173437728-1	chr1	173437228	173438228	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013779, intron 2 of 8)	MIRb|SINE|MIR	17124.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	9.72	17.05	15.72	7.42	10.26	6.43	11.62	7.96	11.87
Merged-chr12-59078659-2	chr12	59078152	59079152	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	11733.0	NM_008891	18949.0	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	18.88	9.68	15.72	16.19	15.39	15.27	25.35	29.63	15.61
Merged-chr15-79467115-2	chr15	79466614	79467614	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24971.0	NM_001359863	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	7.44	1.84	0.0	5.4	2.33	3.22	3.17	4.86	3.12
Merged-chr19-40682794-1	chr19	40682294	40683294	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	23024.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	79.52	105.98	82.32	73.54	54.58	114.14	120.41	109.66	87.43
Merged-chr5-134907340-1	chr5	134906840	134907840	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029681)	promoter-TSS (NM_029681)	-607.0	NM_194065	76629.0	Mm.159750	NM_029681	ENSMUSG00000040576	Tmem270	1700111I05Rik|Wbscr28	transmembrane protein 270	protein-coding	2.86	1.38	7.4	3.37	0.47	0.0	4.22	0.88	1.25
Merged-chr9-14273123-1	chr9	14272623	14273623	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3178.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	13.73	8.75	4.62	10.8	9.8	6.43	13.73	15.48	10.62
Merged-chr2-80038661-2	chr2	80038163	80039163	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001355142, exon 1 of 15)	5' UTR (NM_001355142, exon 1 of 15)	239.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	9.72	0.92	1.85	2.7	7.0	14.47	3.17	6.63	5.0
Merged-chr11-97432163-3	chr11	97431643	97432643	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18017.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.43	4.15	6.47	9.45	7.0	3.22	1.06	0.88	1.25
Merged-chr5-32053707-2	chr5	32053205	32054205	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	RMER17D2|LTR|ERVK	-82767.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.0	5.53	11.1	4.72	5.13	6.43	9.51	6.63	7.49
Merged-chr5-77463780-1	chr5	77463280	77464280	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1708.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	3.43	3.69	1.85	4.05	5.13	9.65	3.17	2.21	3.75
Merged-chr7-98584744-3	chr7	98584258	98585258	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71811.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	6.29	10.6	8.32	6.07	3.27	6.43	3.17	0.88	2.5
Merged-chr19-9988389-2	chr19	9987867	9988867	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011913, intron 9 of 11)	intron (NM_011913, intron 9 of 11)	5721.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	10.3	4.61	18.5	10.8	2.8	6.43	10.56	5.75	8.74
Merged-chrX-49209581-2	chrX	49209069	49210069	+	697.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271449, intron 2 of 15)	RLTR13B1|LTR|ERVK	78673.0	NM_001271449	209224.0	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	4.58	11.52	7.4	10.12	2.8	7.23	15.84	9.29	14.36
Merged-chr12-91587569-2	chr12	91587077	91588077	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2072.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	86.38	82.94	50.87	72.87	41.05	65.11	91.89	67.65	51.21
Merged-chr13-74809288-1	chr13	74808788	74809788	+	697.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301153)	promoter-TSS (NM_001301153)	-528.0	NM_001301153	12380.0	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	8.58	12.44	9.25	15.52	13.06	12.06	16.9	13.71	8.74
Merged-chr10-84515653-3	chr10	84515159	84516159	+	697.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18229.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	3.43	4.61	1.85	3.37	0.0	2.41	3.17	1.77	1.87
Merged-chr10-118977884-3	chr10	118977386	118978386	+	697.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50743.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	13.16	7.83	2.77	9.45	3.73	5.63	15.84	9.73	7.49
Merged-chr17-34627550-3	chr17	34627061	34628061	+	697.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019441)	promoter-TSS (NM_019441)	-126.0	NM_001302396	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	49.77	60.82	47.17	82.99	39.65	88.42	41.19	30.51	36.85
Merged-chr7-75709461-3	chr7	75708956	75709956	+	697.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 17 of 36)	intron (NM_029332, intron 17 of 36)	-138882.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	13.16	30.87	21.27	31.04	26.12	21.7	24.29	19.01	21.23
Merged-chr4-128839324-2	chr4	128838795	128839795	+	697.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-33183.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	100.68	81.56	42.55	93.11	86.3	87.61	67.6	56.6	70.57
Merged-chr9-108345392-2	chr9	108344902	108345902	+	697.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2429.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	21.17	11.52	2.77	4.72	3.73	11.25	10.56	9.29	17.49
Merged-chr8-128039598-2	chr8	128039080	128040080	+	697.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	238645.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	11.44	4.61	5.55	6.07	3.27	3.22	7.39	3.1	7.49
Merged-chr17-86967878-2	chr17	86967365	86968365	+	697.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145491, intron 2 of 4)	intron (NM_145491, intron 2 of 4)	4754.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	16.02	12.9	12.95	20.92	8.86	12.06	21.12	11.05	11.24
Merged-chr3-130708666-3	chr3	130708140	130709140	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025509, intron 1 of 3)	intron (NM_025509, intron 1 of 3)	804.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	89.81	81.56	35.15	78.94	76.51	49.03	90.83	89.32	44.34
Merged-chr2-144219490-3	chr2	144218987	144219987	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30197.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	13.16	4.61	11.1	9.45	2.8	7.23	16.9	7.07	11.87
Merged-chr5-92444363-3	chr5	92443849	92444849	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 11 of 11)	intron (NM_007644, intron 11 of 11)	-9150.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	16.59	20.27	21.27	17.54	11.66	36.97	27.46	20.78	19.36
Merged-chr2-164070509-1	chr2	164070009	164071009	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_025996, exon 1 of 7)	exon (NM_025996, exon 1 of 7)	593.0	NM_025996	67145.0	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	108.12	103.22	124.87	91.09	107.3	132.63	88.72	80.03	85.56
Merged-chr1-106697749-3	chr1	106697246	106698246	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	16544.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	10.3	17.51	25.9	13.49	8.86	9.65	19.01	18.13	7.49
Merged-chr4-43030951-1	chr4	43030451	43031451	+	697.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023231, intron 2 of 9)	CpG	433.0	NM_023231	66592.0	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	82.38	73.73	59.2	118.08	101.7	52.25	92.94	77.82	50.59
Merged-chr15-88514458-4	chr15	88514020	88515020	+	697.3125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85782.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	136.72	196.29	104.52	141.02	143.68	124.59	199.62	218.43	111.17
Merged-chr2-31256761-2	chr2	31256259	31257259	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019681, intron 1 of 7)	intron (NM_019681, intron 1 of 7)	10836.0	NM_019681	14299.0	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.0	0.0	2.77	2.7	2.33	5.63	3.17	1.33	1.25
Merged-chr10-20788978-2	chr10	20788477	20789477	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-63899.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	13.73	11.06	33.3	16.87	7.93	18.49	13.73	9.29	6.25
Merged-chr6-43637426-2	chr6	43636891	43637891	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013861, intron 2 of 8)	intron (NM_013861, intron 2 of 8)	28887.0	NM_013861	29807.0	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	49.77	46.54	13.87	33.74	36.85	29.74	35.91	28.74	16.86
Merged-chr13-23572718-4	chr13	23572332	23573332	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178196)	TTS (NM_178196)	1358.0	NM_178195	319180.0		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	139.01	141.46	55.5	95.81	84.44	53.05	130.97	180.85	83.69
Merged-chr7-100429319-2	chr7	100428829	100429829	+	697.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017985, intron 20 of 32)	MER90|LTR|ERV1	-43662.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	47.48	52.99	16.65	70.85	39.19	71.54	61.26	65.44	34.97
Merged-chr11-99164661-2	chr11	99164167	99165167	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9590.0	NM_007719	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	117.27	96.3	67.52	120.77	56.45	74.75	137.3	130.88	73.69
Merged-chr16-3893011-2	chr16	3892524	3893524	+	697.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290689, intron 1 of 5)	intron (NM_001290689, intron 1 of 5)	8405.0	NM_001290689	74763.0	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|HAT4|Nat15|NatF	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	27.46	29.95	37.0	26.99	27.06	40.19	24.29	27.86	43.09
Merged-chr2-174672703-3	chr2	174672229	174673229	+	697.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	29195.0	NM_001099328	100043757.0	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	-	zinc finger protein 831	protein-coding	13.16	11.06	2.77	12.14	13.53	12.86	15.84	11.05	3.75
Merged-chr4-6452595-3	chr4	6452093	6453093	+	697.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010945, intron 1 of 30)	intron (NM_010945, intron 1 of 30)	1678.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	149.31	208.27	126.72	138.99	170.74	134.23	164.76	236.12	109.29
Merged-chr10-118049484-1	chr10	118048984	118049984	+	697.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92303.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	18.31	12.44	12.95	28.34	12.6	12.86	24.29	30.95	11.24
Merged-chr8-122566844-3	chr8	122566332	122567332	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1183.0	NM_026014	67177.0	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	212.23	256.66	177.59	209.84	235.59	254.0	203.84	293.6	179.24
Merged-chr19-11060561-3	chr19	11060063	11061063	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9997.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	34.9	52.99	55.5	42.51	39.19	57.87	50.7	43.33	33.1
Merged-chr6-65146547-3	chr6	65146036	65147036	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1806.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	17.73	25.34	16.65	22.94	17.26	26.53	11.62	11.5	6.87
Merged-chr5-124470705-3	chr5	124470284	124471284	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	7451.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	10.3	9.22	2.77	18.22	13.53	11.25	6.34	7.52	11.87
Merged-chr5-32754096-3	chr5	32753604	32754604	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-7762.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	16.59	20.27	18.5	14.84	18.66	14.47	12.67	18.13	20.61
Merged-chr8-120599732-3	chr8	120599237	120600237	+	697.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10662.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	8.01	8.29	1.85	5.4	2.8	7.23	8.45	14.59	12.49
Merged-chr2-142883033-2	chr2	142882517	142883517	+	697.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	18447.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	21.74	24.88	24.05	46.56	28.46	17.68	19.01	21.22	11.87
Merged-chr9-77835950-2	chr9	77835444	77836444	+	697.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	81409.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.15	6.91	5.55	9.45	6.06	11.25	8.45	3.1	3.12
Merged-chr8-117133974-2	chr8	117133468	117134468	+	697.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001163028)	TTS (NM_001163028)	-24167.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	8.01	5.99	3.7	5.4	4.2	7.23	9.51	7.07	6.25
Merged-chr5-148503581-2	chr5	148503055	148504055	+	697.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48118.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	11.44	13.36	3.7	29.01	15.39	25.72	6.34	8.4	6.87
Merged-chr11-70213130-2	chr11	70212630	70213630	+	697.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153081)	promoter-TSS (NM_153081)	-780.0	NM_153081	216867.0	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	1.14	4.15	1.85	9.45	2.33	3.22	3.17	1.77	0.0
Merged-chr1-177726272-3	chr1	177725755	177726755	+	697.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR34D_MM|LTR|ERVK	-3559.0	NM_027077	69428.0	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	13.73	10.6	12.02	4.72	1.87	6.43	6.34	9.73	8.74
Merged-chr9-45236006-3	chr9	45235471	45236471	+	697.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	30736.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	56.63	40.09	55.5	33.74	27.52	49.03	63.37	47.31	42.47
Merged-chr2-49771265-2	chr2	49770782	49771782	+	697.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008449, exon 26 of 26)	3' UTR (NM_008449, exon 26 of 26)	-16404.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	3.43	8.75	6.47	5.4	5.6	2.41	2.11	9.29	3.75
Merged-chr2-139381879-2	chr2	139381371	139382371	+	697.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112042.0	NM_001356507	228677.0	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	1.72	0.92	0.0	4.72	1.4	0.8	1.06	1.33	5.0
Merged-chr16-17914731-3	chr16	17914235	17915235	+	697.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029469, intron 1 of 2)	CpG-5570	324.0	NM_029469	195333.0	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	2.86	2.76	0.0	6.75	1.4	3.22	2.11	0.88	5.0
Merged-chr1-52170259-3	chr1	52169756	52170756	+	697.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081081, intron 14 of 17)	B3A|SINE|B2	50634.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.29	5.07	5.55	8.1	4.2	8.04	3.17	6.19	2.5
Merged-chr10-117910114-2	chr10	117909580	117910580	+	697.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15379.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	308.34	184.77	101.74	238.18	154.41	98.06	191.17	217.1	75.57
Merged-chr7-116603945-3	chr7	116603422	116604422	+	697.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	99553.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	25.74	27.19	11.1	43.18	42.45	40.19	23.24	21.67	18.11
Merged-chr2-171719418-1	chr2	171718918	171719918	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	243381.0	NR_040509	75655.0	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	2.29	1.84	2.77	0.0	6.53	8.04	1.06	2.65	5.0
Merged-chr5-135487090-1	chr5	135486590	135487590	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	58032.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	29.75	26.73	35.15	19.57	17.73	32.15	31.69	25.65	21.23
Merged-chr9-65666196-1	chr9	65665696	65666696	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10352.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.72	2.76	1.85	6.75	5.13	3.22	3.17	1.33	1.25
Merged-chr12-41378131-1	chr12	41377631	41378631	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	107926.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	1.14	3.23	0.92	0.67	2.8	0.0	2.11	2.65	1.25
Merged-chrX-99043437-1	chrX	99042937	99043937	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	856.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	66.36	74.19	70.3	70.85	79.31	59.48	49.64	74.73	46.22
Merged-chr15-102458484-1	chr15	102457984	102458984	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001170911)	promoter-TSS (NM_001170911)	-686.0	NM_001170911	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	52.06	51.61	33.3	36.43	49.45	59.48	43.3	46.87	39.97
Merged-chr5-8953922-1	chr5	8953422	8954422	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008830, intron 25 of 27)	intron (NM_008830, intron 25 of 27)	43224.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	5.72	3.69	9.25	0.67	6.53	3.22	3.17	8.4	3.75
Merged-chr15-102460186-1	chr15	102459686	102460686	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 3 of 4)	intron (NM_025385, intron 3 of 4)	1016.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	36.04	45.62	42.55	46.56	40.12	58.68	60.2	51.29	53.08
Merged-chr16-93691482-1	chr16	93690982	93691982	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173047)	TTS (NM_173047)	8263.0	NM_173047	109857.0	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	1.72	1.84	0.92	3.37	2.33	8.04	3.17	5.31	7.49
Merged-chr11-77680274-1	chr11	77679774	77680774	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-5865.0	NM_001024205	68564.0	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	12.01	9.22	12.95	7.42	5.6	8.04	13.73	8.84	12.49
Merged-chr16-50431124-1	chr16	50430624	50431624	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027444, intron 1 of 16)	intron (NM_027444, intron 1 of 16)	1265.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	136.15	140.54	73.07	151.81	91.9	90.02	145.75	135.75	71.82
Merged-chr1-172203768-2	chr1	172203272	172204272	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	3032.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	17.16	18.43	26.82	14.17	14.0	34.56	13.73	10.17	21.23
Merged-chr9-99358504-1	chr9	99358004	99359004	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177775)	promoter-TSS (NM_177775)	26.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	3.43	3.69	1.85	4.05	1.4	0.0	3.17	2.65	3.75
Merged-chr17-6972923-1	chr17	6972423	6973423	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5937.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	8.01	6.91	12.95	10.12	1.4	0.0	5.28	5.75	1.87
Merged-chr16-10451451-1	chr16	10450951	10451951	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-4089.0	NM_001013778	383103.0	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	29.17	24.42	38.85	8.1	9.8	4.02	27.46	17.24	8.74
Merged-chr6-65569934-1	chr6	65569434	65570434	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20464.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	1.72	2.3	1.85	4.72	1.4	3.22	0.0	0.88	5.0
Merged-chr15-52510353-1	chr15	52509853	52510853	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202092.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	3.43	3.69	0.92	1.35	3.27	0.0	1.06	2.65	7.49
Merged-chr7-47150850-1	chr7	47150350	47151350	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17166.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	1.72	1.84	3.7	5.4	2.33	4.82	3.17	2.21	1.25
Merged-chr3-27278361-1	chr3	27277861	27278861	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38716.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	11.44	10.14	7.4	16.19	12.6	16.08	17.96	6.19	6.87
Merged-chr5-72291830-1	chr5	72291330	72292330	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 21 of 22)	intron (NR_003966, intron 21 of 22)	88487.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	17.73	8.29	22.2	17.54	14.93	12.06	11.62	16.8	7.49
Merged-chr15-23587991-1	chr15	23587491	23588491	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	551528.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	1.72	1.84	11.1	1.35	3.73	4.82	0.0	5.75	1.87
Merged-chr3-27200895-1	chr3	27200395	27201395	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	17891.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	44.62	26.73	37.0	25.64	25.19	24.92	22.18	22.55	18.11
Merged-chr13-74192791-1	chr13	74192291	74193291	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177333, exon 4 of 13)	exon (NM_177333, exon 4 of 13)	15909.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	3.43	4.61	0.0	3.37	4.2	3.22	2.11	7.96	7.49
Merged-chr10-22158971-1	chr10	22158471	22159471	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	362.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	6.86	4.61	10.17	6.07	12.6	3.22	4.22	0.88	3.75
Merged-chr7-75366636-1	chr7	75366136	75367136	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57374.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.0	1.84	1.85	2.02	3.27	0.0	2.11	0.44	0.0
Merged-chr17-83862379-3	chr17	83861869	83862869	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7951.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	33.18	28.11	17.57	37.78	29.39	28.13	27.46	22.55	16.86
Merged-chr18-77713352-2	chr18	77712836	77713836	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027978)	promoter-TSS (NR_027978)	674.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	101.25	78.79	83.25	105.26	82.11	83.59	110.9	49.52	48.71
Merged-chr2-32167157-1	chr2	32166657	32167657	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172661, intron 1 of 29)	intron (NM_172661, intron 1 of 29)	16009.0	NM_001159634	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	7.44	5.99	3.7	9.45	5.6	8.04	8.45	8.4	7.49
Merged-chr16-36703942-1	chr16	36703442	36704442	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	intron (NM_001285788, intron 1 of 7)	9964.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	5.72	4.15	3.7	9.45	5.6	6.43	5.28	1.77	1.25
Merged-chrX-93286394-1	chrX	93285894	93286894	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001305940)	promoter-TSS (NM_001305940)	-113.0	NM_007492	11878.0	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	Arx1	aristaless related homeobox	protein-coding	1.14	0.46	0.0	1.35	0.93	3.22	0.0	0.44	1.25
Merged-chr8-36820779-1	chr8	36820279	36821279	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-87725.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	4.0	6.91	3.7	12.82	14.0	11.25	4.22	1.33	2.5
Merged-chr13-45388309-2	chr13	45387805	45388805	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1437.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	11.44	15.67	11.1	10.8	12.6	12.86	6.34	3.1	7.49
Merged-chr2-80357174-2	chr2	80356683	80357683	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34181.0	NR_040370	100503167.0	Mm.265892	NR_040370		Gm13752	-	predicted gene 13752	ncRNA	1.14	5.07	3.7	13.49	7.93	0.0	2.11	9.73	1.87
Merged-chr8-109614711-2	chr8	109614202	109615202	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001286454, exon 1 of 33)	exon (NM_001286454, exon 1 of 33)	185.0	NM_181544	244646.0	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	1.14	4.61	9.25	4.72	10.26	3.22	8.45	4.86	3.75
Merged-chr11-117883062-1	chr11	117882562	117883562	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9536.0	NM_027919	71776.0	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	37.18	28.57	14.8	27.66	27.52	29.74	28.52	19.01	21.23
Merged-chr13-118403694-1	chr13	118403194	118404194	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16442.0	NM_021556	59054.0	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	3.43	3.69	1.85	4.05	5.6	3.22	3.17	4.42	0.0
Merged-chr3-116861280-1	chr3	116860780	116861780	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009146)	promoter-TSS (NM_009146)	-400.0	NM_009146	20321.0	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	94.39	120.73	60.12	95.14	131.56	77.97	157.37	221.08	111.17
Merged-chr5-123626839-1	chr5	123626339	123627339	+	697.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359223, intron 10 of 19)	intron (NM_001359223, intron 10 of 19)	-53824.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.15	4.15	1.85	2.02	0.47	6.43	3.17	1.33	3.75
Merged-chr11-3203206-5	chr11	3202706	3203706	+	697.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001166549, exon 1 of 18)	5' UTR (NM_001166549, exon 1 of 18)	187.0	NM_001166549	74203.0	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	54.35	75.57	64.75	61.4	60.65	54.66	95.06	82.69	48.09
Merged-chr15-62137953-1	chr15	62137453	62138453	+	697.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81498.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	7.44	9.68	12.95	4.72	4.67	1.61	7.39	3.54	5.0
Merged-chr19-12564406-3	chr19	12563925	12564925	+	696.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-9085.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	5.15	13.36	8.32	12.82	8.86	7.23	17.96	10.17	5.0
Merged-chr10-67315330-3	chr10	67314832	67315832	+	696.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30051.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	2.29	3.69	5.55	8.1	3.27	0.0	8.45	0.88	5.0
Merged-chr13-112751896-3	chr13	112751363	112752363	+	696.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48914.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	41.76	41.01	40.7	43.86	39.19	42.6	73.93	68.09	39.97
Merged-chr14-25749353-2	chr14	25748862	25749862	+	696.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101433, intron 2 of 3)	intron (NM_001101433, intron 2 of 3)	19494.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	15.45	14.28	32.37	10.8	9.33	28.13	10.56	6.63	13.74
Merged-chr11-118490917-3	chr11	118490405	118491405	+	696.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001285436, exon 14 of 14)	3' UTR (NM_001285436, exon 14 of 14)	14073.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	13.73	11.06	7.4	32.39	25.66	23.31	9.51	5.31	9.99
Merged-chr16-44172438-3	chr16	44171913	44172913	+	696.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029889)	promoter-TSS (NM_001029889)	-984.0	NM_001029889	207806.0	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	43.48	77.41	67.52	63.42	69.98	58.68	60.2	79.15	44.34
Merged-chr18-26864982-2	chr18	26864462	26865462	+	696.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1110805.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	12.59	7.37	27.75	10.8	9.33	10.45	25.35	10.61	9.99
Merged-chr16-11460416-3	chr16	11459933	11460933	+	696.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 13 of 20)	intron (NM_028964, intron 13 of 20)	54785.0	NM_001290148	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	33.75	52.99	29.6	63.42	50.38	73.95	44.36	55.27	44.34
Merged-chr1-46078086-1	chr1	46077586	46078586	+	696.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160386, intron 2 of 65)	MTD|LTR|ERVL-MaLR	11348.0	NM_001160386	227058.0	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	4.0	9.22	5.55	2.7	5.13	4.82	2.11	3.98	3.75
Merged-chr18-78805222-3	chr18	78804714	78805714	+	696.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053099, intron 4 of 5)	T-rich|Low_complexity|Low_complexity	-208264.0	NM_207651	27411.0	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	2.86	7.37	7.4	4.72	4.2	12.86	8.45	6.19	11.24
Merged-chr15-13391132-1	chr15	13390632	13391632	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-217457.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	28.6	34.56	22.2	26.99	34.06	32.15	31.69	22.11	21.23
Merged-chr13-24281139-2	chr13	24280666	24281666	+	696.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311122)	promoter-TSS (NM_001311122)	-376.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.57	0.92	1.85	3.37	0.93	0.8	4.22	0.44	0.62
Merged-chr1-155084644-2	chr1	155084136	155085136	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1372.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	16.59	16.59	11.1	18.89	15.86	10.45	23.24	12.38	15.61
Merged-chr19-33366794-2	chr19	33366296	33367296	+	696.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	25499.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	2.29	0.0	0.0	2.02	0.47	0.8	1.06	3.98	2.5
Merged-chr11-20446058-2	chr11	20445574	20446574	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97179.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	7.44	2.76	0.92	2.02	0.93	0.0	3.17	3.1	2.5
Merged-chrX-101132409-2	chrX	101131875	101132875	+	696.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	L1M8|LINE|L1	-46970.0	NM_007515	11989.0	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	16.59	18.89	8.32	20.24	25.19	9.65	13.73	13.27	6.25
Merged-chr4-9610192-3	chr4	9609678	9610678	+	696.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 4 of 22)	intron (NM_001290367, intron 4 of 22)	33539.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.15	5.07	0.0	6.07	3.73	0.0	6.34	7.07	2.5
Merged-chr13-55600828-3	chr13	55600328	55601328	+	696.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146045, intron 1 of 5)	intron (NM_146045, intron 1 of 5)	932.0	NM_001311137	218271.0	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	34.9	28.11	9.25	33.06	34.52	46.62	54.92	57.92	20.61
Merged-chr4-138065648-1	chr4	138065148	138066148	+	696.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	intron (NM_001256195, intron 4 of 34)	67823.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	68.07	78.79	61.05	41.83	31.72	54.66	62.31	85.34	58.71
Merged-chr4-149980125-3	chr4	149979619	149980619	+	696.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	23117.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.57	0.46	1.85	4.05	0.93	5.63	7.39	0.44	6.25
Merged-chr11-51681752-3	chr11	51681213	51682213	+	696.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6921.0	NM_025319	66050.0	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	14.3	5.53	5.55	6.07	10.26	8.84	11.62	7.07	6.25
Merged-chr5-92374276-2	chr5	92373784	92374784	+	696.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-10988.0	NR_038116	56066.0	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	116.7	84.32	61.97	97.83	48.52	70.73	103.51	78.71	67.45
Merged-chr3-88632375-2	chr3	88631893	88632893	+	696.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198912, intron 4 of 21)	intron (NM_001198912, intron 4 of 21)	10999.0	NM_001198912	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	18.88	8.29	24.97	16.19	5.6	20.9	5.28	6.19	8.74
Merged-chr1-132333780-2	chr1	132333287	132334287	+	696.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028778)	TTS (NM_028778)	17662.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	32.61	47.0	44.4	37.78	27.99	73.95	53.87	39.35	47.46
Merged-chr12-112665633-2	chr12	112665119	112666119	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331107, intron 2 of 13)	intron (NM_001331107, intron 2 of 13)	-6268.0	NR_105904	102465566.0		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	10.87	17.51	19.42	18.22	21.46	24.11	24.29	22.55	14.99
Merged-chr10-118609317-2	chr10	118608823	118609823	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52798.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	14.3	10.6	1.85	15.52	11.2	11.25	8.45	2.21	3.75
Merged-chr19-46132380-2	chr19	46131897	46132897	+	696.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007703, intron 1 of 3)	intron (NM_007703, intron 1 of 3)	498.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	4.0	4.15	0.92	3.37	2.33	2.41	7.39	3.1	2.5
Merged-chr11-53520739-3	chr11	53520221	53521221	+	696.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	533.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	78.37	67.27	27.75	95.14	76.04	84.4	64.43	61.46	22.48
Merged-chr2-66101175-3	chr2	66100678	66101678	+	696.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015736, intron 3 of 10)	intron (NM_015736, intron 3 of 10)	23615.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	10.3	3.23	3.7	6.75	7.0	4.82	8.45	5.31	2.5
Merged-chr5-30839996-3	chr5	30839495	30840495	+	696.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-21812.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	13.16	17.51	5.55	32.39	19.59	16.88	24.29	18.57	5.62
Merged-chr3-131237972-3	chr3	131237475	131238475	+	696.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	34126.0	NM_008212	15107.0	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.57	0.92	1.85	2.7	2.8	4.82	3.17	2.21	2.5
Merged-chr10-34111440-1	chr10	34110940	34111940	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14921.0	NM_178908	103511.0	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404|Calhm5	family with sequence similarity 26, member E	protein-coding	8.58	9.22	8.32	14.17	9.33	3.22	7.39	2.21	3.75
Merged-chr7-63997260-1	chr7	63996760	63997760	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58345.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	7.44	6.45	5.55	4.72	3.73	3.22	5.28	4.42	8.12
Merged-chr16-3743122-2	chr16	3742610	3743610	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-989.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	35.47	50.69	51.8	90.41	97.5	110.12	134.14	147.68	71.82
Merged-chr3-88552148-1	chr3	88551648	88552648	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362368)	TTS (NM_001362368)	803.0	NR_155543	83409.0	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	55.49	49.3	47.17	48.58	37.79	53.05	43.3	48.2	56.83
Merged-chr7-144923146-1	chr7	144922646	144923646	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357868, intron 4 of 4)	intron (NM_001357868, intron 4 of 4)	8046.0	NM_001347537	72284.0	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	7.44	7.37	7.4	3.37	6.06	13.66	9.51	12.82	12.49
Merged-chr7-99537187-2	chr7	99536691	99537691	+	696.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	MIRb|SINE|MIR	1705.0	NM_177231	109689.0	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	40.04	28.57	30.52	37.11	28.92	28.13	11.62	20.34	12.49
Merged-chr4-66788398-1	chr4	66787898	66788898	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39153.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	37.18	31.33	11.1	39.13	17.73	13.66	62.31	40.24	6.25
Merged-chr1-139007704-2	chr1	139007217	139008217	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	30060.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	19.45	14.75	18.5	33.06	17.26	22.51	24.29	14.15	21.86
Merged-chr2-59670498-1	chr2	59669998	59670998	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	23729.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	9.72	5.53	6.47	6.07	9.8	8.84	12.67	5.31	4.37
Merged-chr4-28813861-1	chr4	28813361	28814361	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010141, intron 1 of 16)	CpG	716.0	NM_001122889	13841.0	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	2.86	0.46	0.0	4.72	1.87	0.0	2.11	1.77	5.0
Merged-chr10-93292023-1	chr10	93291523	93292523	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	19136.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	7.44	1.84	5.55	5.4	1.4	0.0	3.17	1.77	6.25
Merged-chr10-18139101-1	chr10	18138601	18139601	+	696.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195036, intron 17 of 20)	intron (NM_001195036, intron 17 of 20)	71789.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0.57	1.38	3.7	0.0	0.47	0.0	22.18	5.75	14.99
Merged-chr4-25715180-1	chr4	25714680	25715680	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010243, intron 1 of 2)	MTD|LTR|ERVL-MaLR	84823.0	NM_010243	14348.0	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.0	3.23	1.85	2.7	10.26	9.65	1.06	2.21	2.5
Merged-chr18-56439956-1	chr18	56439456	56440456	+	696.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026240, intron 1 of 13)	intron (NM_026240, intron 1 of 13)	7824.0	NM_026240	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	3.43	4.15	2.77	2.02	3.27	0.0	5.28	1.77	6.25
Merged-chr14-73389272-3	chr14	73388777	73389777	+	696.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3988.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	152.74	230.39	101.74	168.0	146.95	125.39	124.63	170.68	88.68
Merged-chr3-100920847-3	chr3	100920346	100921346	+	696.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1647.0	NM_001165952	229644.0	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	15.45	17.97	1.85	19.57	15.86	10.45	15.84	11.5	8.12
Merged-chr3-27938617-3	chr3	27938115	27939115	+	696.455566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164056)	promoter-TSS (NM_001164056)	-65.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	13.73	7.37	4.62	15.52	12.13	20.9	16.9	7.52	8.74
Merged-chr7-128690330-3	chr7	128689829	128690829	+	696.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346517, intron 1 of 5)	intron (NM_001346517, intron 1 of 5)	1459.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	9.15	1.84	0.0	10.12	1.87	2.41	1.06	0.0	4.37
Merged-chr18-38946574-2	chr18	38946060	38947060	+	696.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	L1M4|LINE|L1	-27861.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.86	9.22	5.55	12.14	15.39	3.22	4.22	4.86	3.12
Merged-chr5-97959828-2	chr5	97959328	97960328	+	696.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133738, intron 12 of 16)	MLT1E2|LTR|ERVL-MaLR	71134.0	NM_133738	71914.0	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	13.73	5.53	7.4	8.1	3.73	3.22	1.06	0.0	1.25
Merged-chr13-62620916-1	chr13	62620416	62621416	+	696.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173381, intron 1 of 2)	intron (NM_173381, intron 1 of 2)	3266.0	NM_001324406	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	7.44	11.06	10.17	6.07	2.33	4.82	31.69	18.57	19.36
Merged-chr17-23969460-3	chr17	23968964	23969964	+	696.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	5766.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	15.45	10.6	7.4	9.45	8.4	7.23	21.12	12.82	11.24
Merged-chr2-145870386-2	chr2	145869893	145870893	+	696.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 9 of 12)	intron (NM_028724, intron 9 of 12)	-32848.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	16.02	13.82	16.65	10.8	9.33	20.9	10.56	6.63	5.62
Merged-chr9-108345851-2	chr9	108345360	108346360	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1971.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	26.89	23.04	14.8	10.12	7.93	17.68	21.12	22.55	34.97
Merged-chr7-65486419-2	chr7	65485937	65486937	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95594.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	2.29	3.69	7.4	4.05	6.53	4.82	2.11	2.65	6.25
Merged-chr11-77355201-2	chr11	77354701	77355701	+	696.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	6921.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	59.49	66.81	19.42	75.57	46.65	61.09	49.64	68.54	38.72
Merged-chr15-53724351-3	chr15	53723856	53724856	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-110077.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	19.45	31.79	12.95	16.19	16.79	20.9	17.96	22.99	12.49
Merged-chr13-92930333-1	chr13	92929833	92930833	+	696.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	85546.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	4.58	5.99	5.55	2.7	2.33	1.61	8.45	6.19	11.24
Merged-chr18-62971388-3	chr18	62970876	62971876	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6540.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	1.72	3.23	3.7	0.67	3.27	1.61	6.34	0.88	2.5
Merged-chr15-27213110-1	chr15	27212610	27213610	+	696.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-253567.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	2.86	1.38	1.85	3.37	4.67	22.51	5.28	1.77	0.0
Merged-chr15-67175426-3	chr15	67174962	67175962	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009177, intron 1 of 8)	intron (NM_009177, intron 1 of 8)	1420.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	72.65	81.56	47.17	45.88	41.05	65.91	63.37	55.71	59.95
Merged-chr3-65991189-1	chr3	65990689	65991689	+	696.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32940.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	13.73	9.68	13.87	10.8	6.06	11.25	10.56	10.61	8.74
Merged-chr11-78347469-1	chr11	78346969	78347969	+	696.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313985, intron 2 of 4)	intron (NM_001313985, intron 2 of 4)	759.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	41.19	37.32	41.62	34.41	21.93	53.05	47.53	48.64	51.21
Merged-chr17-15065792-3	chr17	15065314	15066314	+	696.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12755.0	NM_001034891	381062.0	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	5.15	5.53	7.4	7.42	5.13	1.61	10.56	4.42	11.87
Merged-chr14-17435605-2	chr14	17435105	17436105	+	696.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-225355.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	8.58	8.29	0.0	5.4	6.06	2.41	5.28	3.1	1.25
Merged-chr3-107785440-3	chr3	107784938	107785938	+	696.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24969.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	11.44	6.91	0.0	14.84	2.8	9.65	9.51	1.77	6.25
Merged-chr2-127832709-3	chr2	127832202	127833202	+	696.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113179)	promoter-TSS (NM_001113179)	-843.0	NM_009772	12235.0	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	21.17	18.43	17.57	20.24	14.0	23.31	33.8	15.48	4.37
Merged-chr15-95763133-3	chr15	95762646	95763646	+	696.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11555.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	3.43	1.38	0.0	2.7	2.33	3.22	3.17	1.33	9.37
Merged-chr17-88528076-2	chr17	88527635	88528635	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1989.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	23.45	30.41	37.92	36.43	22.39	28.94	25.35	23.43	16.86
Merged-chrX-153037624-1	chrX	153037124	153038124	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023788)	promoter-TSS (NM_023788)	-5.0	NR_040272	319781.0	Mm.92891	NR_040272	ENSMUSG00000085982	9530051G07Rik	-	RIKEN cDNA 9530051G07 gene	ncRNA	2.29	0.0	0.0	1.35	0.0	0.0	2.11	1.77	1.25
Merged-chr3-69976362-1	chr3	69975862	69976862	+	696.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-31251.0	NM_001018031	229389.0	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	3.43	3.23	7.4	4.05	4.67	3.22	3.17	3.98	7.49
Merged-chr14-122853042-2	chr14	122852526	122853526	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 22 of 24)	intron (NR_153443, intron 22 of 24)	-60004.0	NR_155287	105245866.0	Mm.390754	NM_001039531	ENSMUSG00000075463	Gm15735	4930594M22Rik|F930011C10Rik	predicted gene 15735	ncRNA	15.45	6.91	21.27	9.45	13.53	11.25	6.34	7.96	6.25
Merged-chr9-109021609-2	chr9	109021104	109022104	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153430, intron 9 of 13)	intron (NR_153430, intron 9 of 13)	-16963.0	NM_001284332	66940.0	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	30.32	24.88	3.7	29.69	20.53	22.51	26.4	25.2	21.86
Merged-chr2-124712977-2	chr2	124712485	124713485	+	696.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	59404.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	19.45	24.42	12.95	22.27	15.39	21.7	28.52	13.71	34.35
Merged-chr6-119502163-2	chr6	119501683	119502683	+	696.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	22515.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	5.72	1.38	0.0	4.05	8.4	1.61	6.34	3.54	2.5
Merged-chr14-32801676-3	chr14	32801194	32802194	+	696.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163616, intron 1 of 4)	intron (NM_001163616, intron 1 of 4)	15731.0	NM_001163616	69069.0	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	9.72	7.83	12.95	7.42	7.46	20.09	6.34	4.42	7.49
Merged-chr19-34772974-3	chr19	34772473	34773473	+	696.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25862.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	2.86	3.69	5.55	4.72	5.13	1.61	9.51	2.65	3.75
Merged-chr11-32682514-2	chr11	32682001	32683001	+	696.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271347, intron 2 of 12)	intron (NM_001271347, intron 2 of 12)	39946.0	NM_001271347	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	19.45	16.13	22.2	11.47	27.06	16.08	28.52	10.61	10.62
Merged-chr4-53794469-2	chr4	53794003	53795003	+	696.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14798.0	NM_009317	21350.0	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	9.72	7.37	5.55	10.12	10.26	9.65	1.06	8.4	5.0
Merged-chr12-99560803-2	chr12	99560297	99561297	+	696.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3044.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	64.64	93.54	44.4	48.58	29.39	52.25	61.26	106.12	46.84
Merged-chr9-7775209-2	chr9	7774733	7775733	+	696.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	-9157.0	NR_049191	100885830.0		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	18.31	23.04	10.17	31.71	11.66	22.51	17.96	17.24	24.36
Merged-chr14-60451812-2	chr14	60451322	60452322	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	73536.0	NM_001164705	72125.0	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	2.86	3.69	0.92	2.02	6.06	2.41	4.22	2.65	6.25
Merged-chr9-14203973-1	chr9	14203473	14204473	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72328.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	3.43	4.61	4.62	5.4	1.4	8.04	2.11	3.1	4.37
Merged-chr1-16203294-1	chr1	16202794	16203794	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97412.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.57	3.69	8.32	1.35	0.93	2.41	2.11	4.42	0.0
Merged-chr4-135306711-1	chr4	135306211	135307211	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-33951.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	41.19	23.96	24.05	26.99	17.26	29.74	25.35	16.36	33.72
Merged-chr14-105896285-3	chr14	105895771	105896771	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011897, intron 1 of 1)	CpG	548.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	15.45	9.68	16.65	14.17	5.13	16.88	4.22	2.65	2.5
Merged-chr12-105807705-1	chr12	105807205	105808205	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 6 of 21)	intron (NM_011112, intron 6 of 21)	23008.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	10.87	10.14	8.32	6.75	12.6	6.43	4.22	4.42	11.24
Merged-chr13-111687502-2	chr13	111686971	111687971	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172593, intron 1 of 12)	CpG	1293.0	NM_172593	218613.0	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	5.72	6.45	3.7	8.1	5.13	8.84	11.62	2.21	6.25
Merged-chr19-43786443-1	chr19	43785943	43786943	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013806, intron 2 of 31)	intron (NM_013806, intron 2 of 31)	4135.0	NM_013806	12780.0	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	2.86	3.23	0.0	4.72	1.4	0.8	7.39	0.88	1.25
Merged-chr10-96622476-1	chr10	96621976	96622976	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007569, exon 2 of 2)	3' UTR (NM_007569, exon 2 of 2)	5475.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	13.16	10.14	18.5	10.12	7.93	14.47	9.51	9.73	7.49
Merged-chr3-79627724-1	chr3	79627224	79628224	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025794, intron 1 of 12)	intron (NM_025794, intron 1 of 12)	1043.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	34.9	25.8	10.17	24.29	23.33	12.86	27.46	17.69	10.62
Merged-chr3-142499241-2	chr3	142498753	142499753	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153564, intron 1 of 10)	intron (NM_153564, intron 1 of 10)	2319.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	8.58	8.29	6.47	6.07	2.33	3.22	9.51	2.65	12.49
Merged-chr5-33997289-1	chr5	33996789	33997789	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001985, intron 1 of 2)	CpG	1305.0	NM_001001985	269642.0	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.0	0.46	1.85	9.45	3.73	14.47	1.06	1.33	0.0
Merged-chr10-122799788-2	chr10	122799290	122800290	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 2 of 9)	MTB|LTR|ERVL-MaLR	120475.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	21.74	16.59	17.57	33.74	48.05	28.94	45.42	37.58	16.86
Merged-chr2-32646556-1	chr2	32646056	32647056	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007932)	promoter-TSS (NM_007932)	-39.0	NM_007932	13805.0	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	13.16	13.36	16.65	10.12	15.86	19.29	7.39	6.19	9.99
Merged-chr4-44113899-1	chr4	44113399	44114399	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7994.0	NR_040414	623796.0	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	-	prothymosin alpha pseudogene	pseudo	2.86	2.3	1.85	4.05	4.67	3.22	5.28	3.54	3.75
Merged-chr12-70129293-1	chr12	70128793	70129793	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-17258.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	4.58	5.53	3.7	7.42	5.13	1.61	4.22	3.1	3.75
Merged-chr10-67210112-2	chr10	67209611	67210611	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	MTC|LTR|ERVL-MaLR	24361.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	38.9	42.39	38.85	56.68	27.99	42.6	34.85	30.51	38.72
Merged-chr2-158361213-1	chr2	158360713	158361713	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015463, intron 1 of 5)	intron (NR_015463, intron 1 of 5)	296.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	18.88	12.9	20.35	26.99	26.59	36.17	9.51	16.8	15.61
Merged-chr4-86575022-1	chr4	86574522	86575522	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-651.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	33.75	34.56	21.27	42.51	37.79	16.88	49.64	49.08	29.98
Merged-chr2-160603530-2	chr2	160603013	160604013	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42384.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	20.59	15.67	24.05	18.89	6.53	20.09	16.9	14.59	11.87
Merged-chr1-172078158-1	chr1	172077658	172078658	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021607, intron 2 of 16)	intron (NM_021607, intron 2 of 16)	-4371.0	NM_009938	12847.0	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	12.01	10.14	12.95	4.05	6.53	13.66	9.51	9.73	7.49
Merged-chr5-142376263-3	chr5	142375766	142376766	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25231.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	8.58	6.91	10.17	2.7	7.0	22.51	9.51	3.98	6.25
Merged-chr9-52229847-1	chr9	52229347	52230347	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61736.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	5.15	2.3	0.0	2.7	7.46	3.22	2.11	1.77	6.25
Merged-chr3-81961515-1	chr3	81961015	81962015	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019911, intron 9 of 11)	intron (NM_019911, intron 9 of 11)	14213.0	NM_019911	56720.0	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	2.29	2.76	3.7	4.05	1.4	2.41	5.28	3.1	1.25
Merged-chr7-72669291-1	chr7	72668791	72669791	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-362696.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.57	2.76	0.0	10.8	6.53	1.61	2.11	0.44	1.25
Merged-chr8-39006771-1	chr8	39006271	39007271	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357305, intron 1 of 8)	intron (NM_001357305, intron 1 of 8)	926.0	NM_001357306	80286.0	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	26.89	26.26	37.0	26.31	13.53	23.31	27.46	23.88	9.99
Merged-chr11-31787593-1	chr11	31787093	31788093	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36954.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	3.43	3.23	3.7	11.47	0.93	0.0	1.06	0.88	8.74
Merged-chr6-128411255-2	chr6	128410759	128411759	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133927, intron 10 of 11)	B3|SINE|B2	11493.0	NM_001162858	60345.0	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	1.14	5.53	2.77	0.67	4.67	0.0	3.17	2.21	6.25
Merged-chr11-77381782-1	chr11	77381282	77382282	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	33502.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	27.46	23.04	12.95	16.19	15.86	24.11	24.29	21.67	13.12
Merged-chr11-71996127-3	chr11	71995606	71996606	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41403.0	NM_053245	114230.0	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	5.15	6.91	7.4	4.05	1.87	4.82	0.0	3.1	1.87
Merged-chr2-5605987-1	chr2	5605487	5606487	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	70059.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	21.17	7.83	11.1	33.74	9.8	4.82	6.34	6.63	5.0
Merged-chr16-91778150-3	chr16	91777657	91778657	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	48786.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	20.02	16.13	12.95	16.87	7.46	20.09	27.46	12.38	16.24
Merged-chr1-93636386-1	chr1	93635886	93636886	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021537)	promoter-TSS (NM_021537)	-659.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	29.17	42.39	33.3	35.09	39.65	44.21	53.87	49.96	41.84
Merged-chr13-81134608-2	chr13	81134105	81135105	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	RMER10A|LTR|ERVL	170531.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	57.78	80.18	53.65	82.32	66.71	81.99	85.55	91.97	64.95
Merged-chr18-38602977-1	chr18	38602477	38603477	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1709.0	NM_011898	24066.0	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty RTK signaling antagonist 4	protein-coding	6.29	3.23	0.0	0.67	2.33	3.22	1.06	4.86	6.25
Merged-chr11-69060335-2	chr11	69059823	69060823	+	696.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028005, exon 1 of 1)	exon (NM_028005, exon 1 of 1)	548.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	180.77	181.09	156.32	149.79	147.42	168.8	175.33	200.3	168.0
Merged-chr11-113777333-1	chr11	113776833	113777833	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25518.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	7.44	2.76	5.55	8.77	4.2	9.65	14.79	11.5	13.74
Merged-chr2-30801737-1	chr2	30801237	30802237	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198000)	promoter-TSS (NM_198000)	0.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	5.15	1.84	1.85	4.05	1.87	3.22	7.39	2.21	1.25
Merged-chr5-150593222-1	chr5	150592722	150593722	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133898, intron 1 of 4)	intron (NM_133898, intron 1 of 4)	1303.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	215.66	217.03	178.52	155.86	141.35	185.68	202.79	244.08	159.25
Merged-chr14-44086775-1	chr14	44086275	44087275	+	696.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15879.0	NM_007895	13587.0	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	6.86	11.98	10.17	6.07	5.6	1.61	5.28	1.77	5.0
Merged-chr2-122301704-1	chr2	122301204	122302204	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025777, exon 5 of 6)	exon (NM_025777, exon 5 of 6)	2804.0	NM_025777	66811.0	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	4.0	3.69	1.85	2.7	0.93	2.41	3.17	1.33	3.75
Merged-chr6-138153216-1	chr6	138152716	138153716	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154598, intron 2 of 2)	intron (NR_154598, intron 2 of 2)	11629.0	NM_001361309	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	4.58	5.99	6.47	6.07	2.33	4.82	3.17	2.21	0.0
Merged-chrX-36114943-1	chrX	36114443	36115443	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133990, intron 1 of 10)	intron (NM_133990, intron 1 of 10)	2835.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	45.19	63.59	34.22	39.81	38.25	18.49	89.78	62.35	33.72
Merged-chr11-106702756-2	chr11	106702250	106703250	+	696.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305158, intron 2 of 14)	intron (NM_001305158, intron 2 of 14)	12531.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	17.73	17.97	32.37	20.24	19.13	12.86	14.79	10.17	10.62
Merged-chr6-17628442-3	chr6	17627936	17628936	+	695.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-8574.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	90.38	120.73	122.09	82.32	77.44	79.58	71.82	96.39	88.68
Merged-chr11-78037912-2	chr11	78037418	78038418	+	695.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040403)	promoter-TSS (NM_001040403)	-23.0	NM_001040403	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	28.6	6.45	12.95	18.89	11.66	8.04	15.84	10.17	11.24
Merged-chr4-134005132-3	chr4	134004631	134005631	+	695.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145833, exon 4 of 4)	3' UTR (NM_145833, exon 4 of 4)	-4267.0	NM_026144	67422.0	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	9.15	8.29	9.25	10.8	2.8	4.82	11.62	11.5	8.12
Merged-chr14-70078757-3	chr14	70078279	70079279	+	695.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	984.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	9.15	2.76	7.4	4.72	4.2	3.22	7.39	1.77	5.62
Merged-chr5-31054156-3	chr5	31053682	31054682	+	695.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023525)	promoter-TSS (NM_023525)	-598.0	NM_023525	69719.0	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	34.9	19.81	25.9	29.01	33.59	32.96	32.74	49.08	30.6
Merged-chr12-38904669-2	chr12	38904165	38905165	+	695.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120954.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	2.29	3.69	12.02	2.7	7.0	4.82	5.28	1.77	1.25
Merged-chr5-21213095-3	chr5	21212622	21213622	+	695.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153365, intron 5 of 26)	MTD|LTR|ERVL-MaLR	26855.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	30.89	18.89	24.97	33.06	17.26	28.13	12.67	21.22	19.36
Merged-chr10-77033896-3	chr10	77033400	77034400	+	695.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031196, intron 1 of 5)	intron (NM_031196, intron 1 of 5)	688.0	NM_031196	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	9.15	7.37	8.32	10.8	15.39	12.86	6.34	10.17	3.12
Merged-chr12-16830054-1	chr12	16829554	16830554	+	695.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19089.0	NM_033270	50496.0	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	2.29	3.69	3.7	5.4	4.2	4.82	6.34	0.44	5.0
Merged-chr11-118208383-2	chr11	118207867	118208867	+	695.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4375.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	40.04	45.16	49.95	48.58	28.92	47.42	34.85	27.41	24.36
Merged-chr17-86142483-1	chr17	86141983	86142983	+	695.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030133, intron 1 of 20)	intron (NM_030133, intron 1 of 20)	2692.0	NM_030133	78586.0	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	10.3	11.52	5.55	19.57	9.8	9.65	3.17	3.1	5.0
Merged-chr1-89466494-1	chr1	89465994	89466994	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 1 of 16)	MTEa|LTR|ERVL-MaLR	11683.0	NM_001037136	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.72	2.76	1.85	11.47	4.2	7.23	7.39	5.31	2.5
Merged-chr6-125444090-1	chr6	125443590	125444590	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	50670.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	5.15	1.84	6.47	6.75	4.2	2.41	7.39	2.65	1.25
Merged-chr19-21275874-3	chr19	21275324	21276324	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009551, intron 1 of 5)	(CATA)n|Simple_repeat|Simple_repeat	3546.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	15.45	12.44	12.95	29.01	25.19	15.27	22.18	11.05	3.75
Merged-chr5-135144414-2	chr5	135143898	135144898	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5313.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	9.15	10.14	14.8	10.12	7.0	19.29	13.73	12.38	13.74
Merged-chr3-15345779-3	chr3	15345259	15346259	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13457.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	5.72	6.45	2.77	6.75	8.86	4.02	15.84	9.29	8.74
Merged-chr15-8098075-3	chr15	8097554	8098554	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358788, intron 2 of 3)	B3|SINE|B2	1155.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	8.01	16.13	4.62	9.45	4.67	5.63	2.11	9.73	8.12
Merged-chr11-98829592-3	chr11	98829098	98830098	+	695.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 11 of 13)	intron (NM_138660, intron 11 of 13)	-7187.0	NM_001080925	268480.0	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	38.9	36.4	42.55	33.06	28.46	23.31	43.3	27.41	8.74
Merged-chr5-121260212-1	chr5	121259712	121260712	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 4 of 75)	intron (NM_181421, intron 4 of 75)	39993.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	13.16	10.6	9.25	6.75	6.53	4.82	4.22	5.75	2.5
Merged-chr13-37432955-1	chr13	37432455	37433455	+	695.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87610.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	13.73	15.67	16.65	24.96	11.2	16.08	19.01	19.01	6.87
Merged-chr3-135670744-2	chr3	135670224	135671224	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	20823.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	5.72	15.21	2.77	10.12	6.06	3.22	14.79	7.07	14.99
Merged-chr13-112673383-2	chr13	112672883	112673883	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 2 of 14)	intron (NM_178746, intron 2 of 14)	12617.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	22.88	24.42	16.65	14.84	7.46	4.82	46.47	46.43	30.6
Merged-chr10-99380273-2	chr10	99379788	99380788	+	695.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117057.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	4.58	6.91	2.77	10.12	10.73	8.04	6.34	7.52	9.37
Merged-chr14-70055364-2	chr14	70054879	70055879	+	695.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 6 of 6)	intron (NM_028560, intron 6 of 6)	-22066.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	22.31	14.75	4.62	24.96	4.67	13.66	33.8	21.67	8.12
Merged-chr4-143155255-2	chr4	143154759	143155759	+	695.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256380, intron 6 of 7)	intron (NM_001256380, intron 6 of 7)	-19097.0	NR_105988	102465618.0		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	26.89	29.49	29.6	26.99	24.26	45.01	35.91	28.3	28.1
Merged-chr10-97712828-2	chr10	97712318	97713318	+	695.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033537, intron 4 of 4)	intron (NR_033537, intron 4 of 4)	-1954.0	NR_130993	78127.0	Mm.376175	NR_130992	ENSMUSG00000112497	4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	5.72	1.84	0.0	2.7	2.8	1.61	1.06	4.86	6.25
Merged-chr11-78600697-3	chr11	78600179	78601179	+	695.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008702, intron 3 of 10)	intron (NM_008702, intron 3 of 10)	-49944.0	NM_133706	69071.0	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	29.17	16.59	20.35	26.99	23.79	32.96	19.01	27.41	19.36
Merged-chr7-145281741-1	chr7	145281241	145282241	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	2270.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	10.87	11.98	25.9	15.52	7.0	16.88	10.56	7.52	8.12
Merged-chr7-101571077-3	chr7	101570579	101571579	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	10082.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	8.01	9.22	3.7	9.45	4.2	14.47	26.4	12.82	17.49
Merged-chr7-139412630-2	chr7	139412118	139413118	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	12124.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	6.29	3.69	5.55	5.4	1.87	7.23	2.11	1.77	1.25
Merged-chr9-82980534-2	chr9	82980039	82981039	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5050.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	6.86	5.53	1.85	6.07	5.6	2.41	6.34	1.33	5.0
Merged-chr13-37855200-1	chr13	37854700	37855700	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	27807.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	70.36	99.07	36.07	69.5	69.98	81.18	101.39	120.27	33.1
Merged-chr9-99385221-1	chr9	99384721	99385721	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008624)	TTS (NM_008624)	-26691.0	NM_177775	272636.0	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	15.45	14.28	12.02	17.54	8.86	6.43	7.39	4.42	2.5
Merged-chr2-114624867-2	chr2	114624361	114625361	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	30103.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	19.45	16.59	18.5	12.14	18.19	16.08	9.51	5.75	14.36
Merged-chr8-33698328-1	chr8	33697828	33698828	+	695.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010344)	TTS (NM_010344)	-33586.0	NM_001167921	68153.0	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	2.86	0.46	0.0	2.02	1.87	1.61	0.0	0.44	2.5
Merged-chr14-54365430-2	chr14	54364917	54365917	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026936, intron 3 of 9)	intron (NM_026936, intron 3 of 9)	4576.0	NM_026936	69089.0	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	15.45	17.05	12.02	10.8	10.73	13.66	22.18	10.61	29.35
Merged-chr8-83896060-2	chr8	83895550	83896550	+	695.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4048.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	6.29	3.23	0.92	6.07	2.33	3.22	1.06	0.88	2.5
Merged-chr17-88403511-1	chr17	88403011	88404011	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37193.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	2.29	3.69	1.85	4.05	4.2	4.82	1.06	3.98	7.49
Merged-chr17-40824774-1	chr17	40824274	40825274	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011269, intron 1 of 9)	Lx8|LINE|L1	13625.0	NM_011269	19743.0	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	10.87	4.61	3.7	5.4	0.93	2.41	2.11	0.88	1.25
Merged-chr19-4989194-2	chr19	4988674	4989674	+	695.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153553, intron 1 of 7)	intron (NM_153553, intron 1 of 7)	797.0	NM_153553	225872.0	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	10.3	1.38	0.0	0.0	1.87	1.61	1.06	2.21	2.5
Merged-chr7-3692118-3	chr7	3691655	3692655	+	695.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029934, intron 1 of 7)	intron (NM_029934, intron 1 of 7)	1370.0	NM_029934	77582.0	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	22.31	17.51	4.62	14.17	16.33	36.97	23.24	18.13	16.24
Merged-chr8-68999501-2	chr8	68998999	68999999	+	695.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-89237.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	39.47	37.32	42.55	47.9	19.59	36.17	71.82	62.35	36.22
Merged-chr7-79793015-4	chr7	79792579	79793579	+	695.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008588, exon 1 of 2)	exon (NM_008588, exon 1 of 2)	511.0	NM_008588	17292.0	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	2.29	0.46	7.4	9.45	0.93	0.0	5.28	1.77	1.25
Merged-chr2-170401621-2	chr2	170401134	170402134	+	695.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029815, intron 4 of 12)	intron (NM_029815, intron 4 of 12)	26211.0	NM_001164369	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	2.86	1.38	0.0	5.4	0.47	0.8	2.11	1.77	1.25
Merged-chr13-48572365-3	chr13	48571861	48572861	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34089.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	3.43	3.69	0.0	4.05	1.87	0.0	2.11	3.98	3.75
Merged-chr15-98167766-3	chr15	98167266	98168266	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177716)	promoter-TSS (NM_177716)	-40.0	NM_177716	239650.0	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	4.0	1.84	6.47	2.02	0.93	1.61	1.06	0.88	2.5
Merged-chr4-135292913-2	chr4	135292398	135293398	+	695.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20138.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	11.44	0.0	5.55	8.1	2.33	3.22	4.22	6.19	2.5
Merged-chr17-15813937-3	chr17	15813422	15814422	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 2 of 2)	intron (NM_178615, intron 2 of 2)	12664.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	35.47	23.5	29.6	18.22	18.19	32.15	27.46	36.26	36.22
Merged-chrX-10250695-3	chrX	10250189	10251189	+	695.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1616.0	NM_008769	18416.0	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	2.29	4.15	0.0	6.07	4.2	4.82	0.0	0.44	1.25
Merged-chr13-37880268-1	chr13	37879768	37880768	+	695.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-8166.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	47.48	38.71	19.42	58.7	54.11	26.53	40.14	25.65	12.49
Merged-chr17-17893506-3	chr17	17893033	17894033	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008039, exon 2 of 2)	exon (NM_008039, exon 2 of 2)	5709.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	49.77	62.21	52.72	39.81	41.99	36.17	40.14	43.77	36.85
Merged-chr9-20869386-2	chr9	20868882	20869882	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175687, exon 2 of 8)	exon (NM_175687, exon 2 of 8)	740.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	28.03	29.03	30.52	35.76	35.92	53.85	42.25	26.53	19.98
Merged-chr9-71757092-2	chr9	71756587	71757587	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	14515.0	NM_026599	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	2.29	4.15	0.0	1.35	3.73	1.61	0.0	3.98	5.0
Merged-chr13-44939483-2	chr13	44938987	44939987	+	695.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62609.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.72	8.29	10.17	7.42	6.06	14.47	5.28	1.33	11.24
Merged-chr9-99109344-3	chr9	99108847	99109847	+	695.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	30864.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	177.91	170.49	164.64	223.33	198.73	164.78	211.24	237.0	114.91
Merged-chr5-33822648-3	chr5	33822147	33823147	+	695.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20465.0	NM_175231	107823.0	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	8.58	8.29	1.85	8.1	6.53	9.65	16.9	5.31	11.24
Merged-chr11-77497716-3	chr11	77497227	77498227	+	695.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	intron (NM_001004144, intron 1 of 19)	4315.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	13.16	8.29	0.0	9.45	7.93	14.47	4.22	1.33	6.87
Merged-chr17-34117960-2	chr17	34117449	34118449	+	695.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204973, intron 2 of 12)	intron (NM_001204973, intron 2 of 12)	1951.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	76.08	46.08	38.85	38.46	26.59	54.66	58.09	56.6	34.97
Merged-chr4-156228874-2	chr4	156228378	156229378	+	695.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001008233)	promoter-TSS (NM_001008233)	-336.0	NM_001008233	231002.0	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	11.44	7.37	10.17	11.47	5.13	6.43	15.84	21.22	13.12
Merged-chr2-84532466-2	chr2	84531938	84532938	+	695.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-25565.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	25.74	8.75	22.2	12.82	5.13	9.65	6.34	5.75	2.5
Merged-chr7-145026937-3	chr7	145026443	145027443	+	695.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87018.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	4.58	5.53	8.32	8.1	6.53	4.02	6.34	2.65	5.0
Merged-chr5-3461059-2	chr5	3460575	3461575	+	695.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-82758.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	55.49	70.96	40.7	80.97	72.31	44.21	34.85	42.01	28.73
Merged-chr15-6581071-3	chr15	6580555	6581555	+	695.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	1208.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	28.03	49.3	48.1	45.88	45.72	65.11	66.54	68.98	43.72
Merged-chr6-127267025-3	chr6	127266538	127267538	+	695.044434	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	40929.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	25.74	13.82	16.65	21.59	10.73	12.06	19.01	9.73	1.25
Merged-chr5-3509657-2	chr5	3509149	3510149	+	695.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	MIRb|SINE|MIR	-34184.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	9.72	8.29	6.47	10.12	7.0	2.41	13.73	7.07	3.75
Merged-chr15-79650751-2	chr15	79650270	79651270	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029407, intron 1 of 17)	B1F1|SINE|Alu	8186.0	NM_029407	75729.0	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	5.72	1.84	3.7	3.37	3.27	1.61	1.06	0.44	6.25
Merged-chr6-66897371-1	chr6	66896871	66897871	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	480.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	18.31	25.34	13.87	20.92	18.66	23.31	23.24	11.5	19.98
Merged-chr17-28015171-1	chr17	28014671	28015671	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 12 of 24)	intron (NM_181413, intron 12 of 24)	65413.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	23.45	21.2	28.67	51.95	30.32	16.08	11.62	19.01	15.61
Merged-chr15-97343058-1	chr15	97342558	97343558	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 3 of 5)	MTD|LTR|ERVL-MaLR	-95771.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	5.72	3.23	3.7	8.1	5.6	6.43	4.22	2.21	7.49
Merged-chr7-25178372-2	chr7	25177855	25178855	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23286.0	NR_045848	434147.0	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	2.86	0.92	0.0	2.02	0.47	1.61	1.06	0.0	3.75
Merged-chr4-150210538-2	chr4	150210037	150211037	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9402.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	5.15	8.75	12.95	9.45	6.53	1.61	2.11	6.63	6.25
Merged-chr14-70977393-1	chr14	70976893	70977893	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 7 of 7)	intron (NM_001302094, intron 7 of 7)	87286.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.15	7.37	10.17	6.75	4.67	6.43	2.11	0.88	0.0
Merged-chr16-14535898-1	chr16	14535398	14536398	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-26419.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	3.43	3.69	1.85	4.05	3.73	4.02	2.11	4.42	0.0
Merged-chr11-97279340-1	chr11	97278840	97279840	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 1 of 22)	intron (NM_008942, intron 1 of 22)	1236.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	46.34	49.3	57.35	72.87	66.24	73.14	66.54	44.66	53.71
Merged-chr12-111429163-1	chr12	111428663	111429663	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289487, intron 12 of 13)	intron (NM_001289487, intron 12 of 13)	11718.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	114.98	117.96	130.42	103.23	81.64	88.42	162.65	170.23	121.16
Merged-chr11-54068960-1	chr11	54068460	54069460	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	57.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	156.17	148.83	122.09	131.57	78.84	147.09	153.15	151.22	91.18
Merged-chr6-39384277-1	chr6	39383777	39384777	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011226, intron 2 of 3)	intron (NM_011226, intron 2 of 3)	2924.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	7.44	1.84	0.0	2.7	1.87	6.43	7.39	6.19	12.49
Merged-chr9-35280900-1	chr9	35280400	35281400	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040715)	promoter-TSS (NR_040715)	-205.0	NR_040715	71133.0	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	21.17	9.22	0.0	8.1	2.33	2.41	4.22	2.65	6.87
Merged-chr5-140815224-1	chr5	140814724	140815724	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	15207.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	30.89	32.72	24.97	30.36	24.26	39.39	30.63	20.78	26.85
Merged-chr3-37648656-1	chr3	37648156	37649156	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8709.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	2.86	2.76	4.62	6.75	2.8	6.43	4.22	1.77	0.0
Merged-chr14-73160812-1	chr14	73160312	73161312	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033185, intron 5 of 15)	MTB_Mm|LTR|ERVL-MaLR	18027.0	NR_033185	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	9.72	9.22	12.95	12.82	7.0	11.25	15.84	12.82	14.99
Merged-chr13-101524460-1	chr13	101523960	101524960	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126880.0	NR_046187	78136.0	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	14.3	18.43	5.55	13.49	11.2	8.84	19.01	17.24	9.99
Merged-chr9-100434473-1	chr9	100433973	100434973	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	52000.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	36.04	32.72	50.87	17.54	21.93	43.4	20.07	11.94	16.24
Merged-chr7-55920880-2	chr7	55920345	55921345	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 24 of 30)	MTC|LTR|ERVL-MaLR	41648.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	14.87	14.75	19.42	26.31	14.46	32.15	17.96	35.37	20.61
Merged-chr4-106708478-1	chr4	106707978	106708978	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001126487, exon 8 of 24)	exon (NM_001126487, exon 8 of 24)	19452.0	NM_001126487	381538.0	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	4.58	1.84	0.0	3.37	0.47	3.22	3.17	0.88	0.0
Merged-chr17-63857285-1	chr17	63856785	63857785	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-6696.0	NM_001037997	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	2.86	5.07	3.7	7.42	3.73	14.47	6.34	2.21	2.5
Merged-chr7-103762403-1	chr7	103761903	103762903	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5053.0	NM_147098	259102.0	Mm.377844	NM_147098	ENSMUSG00000050281	Olfr630	MOR17-1	olfactory receptor 630	protein-coding	0.0	0.0	0.0	0.67	0.47	0.0	20.07	9.29	9.99
Merged-chr4-101998731-2	chr4	101998224	101999224	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11884.0	NM_001085520	381536.0	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	-	predicted gene 12789	protein-coding	4.0	0.92	0.0	1.35	0.93	3.22	1.06	0.88	0.0
Merged-chr7-30559224-2	chr7	30558691	30559691	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290569, intron 1 of 8)	intron (NM_001290569, intron 1 of 8)	455.0	NM_029377	75660.0	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	39.47	33.64	23.12	23.62	19.59	40.99	40.14	36.26	29.98
Merged-chr1-55383379-1	chr1	55382879	55383879	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19910.0	NM_029267	75388.0	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	boule homolog, RNA binding protein	protein-coding	4.58	2.76	3.7	6.07	3.73	0.0	2.11	1.77	1.25
Merged-chr5-34233079-2	chr5	34232600	34233600	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001015039, intron 5 of 12)	intron (NM_001015039, intron 5 of 12)	-45390.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	17.73	9.22	12.95	22.27	11.2	12.86	9.51	5.75	3.75
Merged-chr11-114995091-1	chr11	114994591	114995591	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-5205.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	8.58	5.99	16.65	50.6	23.79	76.36	31.69	26.53	26.23
Merged-chr12-86769214-3	chr12	86768708	86769708	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34839.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	4.0	2.76	3.7	3.37	2.33	1.61	2.11	2.21	1.25
Merged-chr10-40529875-1	chr10	40529375	40530375	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-40487.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	6.86	1.84	0.0	4.72	2.33	1.61	4.22	5.75	1.25
Merged-chr7-44824572-1	chr7	44824072	44825072	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171024, intron 1 of 8)	intron (NM_001171024, intron 1 of 8)	-7914.0	NR_033136	107503.0	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	32.04	28.11	32.37	9.45	18.19	29.74	22.18	15.03	12.49
Merged-chr2-91930307-1	chr2	91929807	91930807	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007699)	TTS (NM_007699)	1395.0	NM_001291481	17242.0	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	8.58	3.23	1.85	6.07	4.67	12.06	7.39	7.96	3.75
Merged-chr2-6452131-1	chr2	6451631	6452631	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	99395.0	NM_181399	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.0	4.61	6.47	8.77	6.06	6.43	10.56	0.88	3.12
Merged-chr5-140847404-1	chr5	140846904	140847904	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16973.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.15	0.92	1.85	4.72	2.8	3.22	4.22	0.44	3.75
Merged-chr3-69505297-1	chr3	69504797	69505797	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178726, intron 2 of 3)	intron (NM_178726, intron 2 of 3)	93663.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	4.0	2.3	1.85	7.42	7.93	7.23	9.51	3.1	3.75
Merged-chr7-28350162-1	chr7	28349662	28350662	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013647)	promoter-TSS (NM_013647)	-527.0	NM_013647	20055.0	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	54.92	61.75	70.3	51.28	37.79	40.99	69.71	77.38	52.46
Merged-chr15-102987610-2	chr15	102987104	102988104	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2935.0	NM_010466	15426.0	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	2.86	0.92	0.0	1.35	2.33	0.0	1.06	2.21	3.75
Merged-chr4-108620707-1	chr4	108620207	108621207	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177045, intron 1 of 24)	intron (NM_177045, intron 1 of 24)	751.0	NM_177045	319965.0	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	59.49	38.71	55.5	61.4	66.71	35.37	43.3	50.85	22.48
Merged-chr14-120476299-1	chr14	120475799	120476799	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2162.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	5.72	5.53	1.85	8.1	3.73	6.43	12.67	2.21	0.0
Merged-chr6-4955373-3	chr6	4954878	4955878	+	695.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	52058.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	13.73	21.66	21.27	10.12	13.53	24.11	12.67	8.4	8.12
Merged-chr15-95820735-1	chr15	95820235	95821235	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	9337.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	49.77	54.83	55.5	45.21	45.72	49.03	49.64	43.33	36.85
Merged-chr8-22881212-1	chr8	22880712	22881712	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	21673.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	5.72	13.82	14.8	8.77	7.93	11.25	8.45	5.75	13.12
Merged-chr8-104129970-1	chr8	104129470	104130470	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009868, intron 6 of 11)	MTE2a|LTR|ERVL-MaLR	-24097.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	3.43	7.37	5.55	15.52	10.73	18.49	5.28	9.29	9.37
Merged-chr6-40423966-1	chr6	40423466	40424466	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	12169.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	4.58	3.69	1.85	1.35	1.87	4.82	4.22	1.33	1.87
Merged-chr17-28080632-2	chr17	28080146	28081146	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013687)	promoter-TSS (NM_013687)	-7.0	NM_001085555	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	4.0	2.76	5.55	5.4	3.27	1.61	4.22	2.21	1.25
Merged-chr2-37389781-1	chr2	37389281	37390281	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290642, exon 11 of 22)	exon (NM_001290642, exon 11 of 22)	10347.0	NR_028535	100217435.0		NR_028535		Snord90	MBII-295	small nucleolar RNA, C/D box 90	snoRNA	6.86	10.6	1.85	10.8	14.46	11.25	8.45	3.54	5.62
Merged-chr1-118569657-1	chr1	118569157	118570157	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 33 of 39)	ORR1D2|LTR|ERVL-MaLR	-58288.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	2.29	3.23	9.25	1.35	4.67	0.0	5.28	4.86	1.25
Merged-chr8-4165325-1	chr8	4164825	4165825	+	695.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1242.0	NM_001039578	213027.0	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	8.01	4.61	8.32	5.4	1.87	4.82	6.34	5.75	3.75
Merged-chr1-105865869-1	chr1	105865369	105866369	+	695.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85146.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	22.88	28.57	14.8	30.36	19.59	29.74	25.35	30.07	13.12
Merged-chr16-4268177-3	chr16	4267650	4268650	+	694.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	38921.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	2.86	3.69	0.0	4.72	2.33	3.22	0.0	3.54	5.0
Merged-chr3-65318122-3	chr3	65317634	65318634	+	694.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357358, intron 7 of 13)	intron (NM_001357358, intron 7 of 13)	-15449.0	NR_126080	102637797.0	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	2.29	7.37	9.25	4.72	6.53	5.63	6.34	6.19	1.25
Merged-chr2-142694648-3	chr2	142694135	142695135	+	694.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 23 of 26)	intron (NM_001355123, intron 23 of 26)	206829.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	10.3	9.68	11.1	19.57	7.46	32.15	26.4	15.03	6.87
Merged-chr13-34130501-3	chr13	34129993	34130993	+	694.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023716)	promoter-TSS (NM_023716)	-139.0	NM_023716	73710.0	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	12.59	8.29	5.55	16.19	3.73	2.41	6.34	3.1	1.25
Merged-chr19-5613176-2	chr19	5612682	5613682	+	694.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3088.0	NM_178637	81601.0	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	21.74	17.05	27.75	20.24	13.53	32.96	15.84	13.71	9.37
Merged-chr2-26498801-2	chr2	26498327	26499327	+	694.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	4995.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	93.82	76.95	61.05	109.3	122.23	97.26	123.57	149.01	96.18
Merged-chr1-136116356-2	chr1	136115860	136116860	+	694.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081023, intron 40 of 43)	intron (NM_001081023, intron 40 of 43)	14823.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	6.86	5.99	7.4	7.42	3.27	4.02	8.45	8.84	7.49
Merged-chr11-54093235-3	chr11	54092745	54093745	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7679.0	NM_001136076	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	41.19	38.25	18.5	52.63	33.12	37.78	41.19	49.96	28.1
Merged-chr2-28204372-3	chr2	28203862	28204862	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	-1327.0	NM_001038612	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	1.72	2.3	0.0	0.67	1.87	0.0	1.06	4.42	5.0
Merged-chr8-10007348-3	chr8	10006823	10007823	+	694.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001347309, exon 2 of 6)	exon (NM_001347309, exon 2 of 6)	690.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	8.01	13.36	3.7	12.14	2.33	7.23	12.67	10.61	0.62
Merged-chr6-83028745-3	chr6	83028236	83029236	+	694.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 9 of 9)	intron (NM_033079, intron 9 of 9)	4735.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	69.79	60.36	61.05	45.88	23.33	24.92	29.57	23.88	13.12
Merged-chr11-58108036-2	chr11	58107526	58108526	+	694.821411	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356477, intron 1 of 6)	intron (NM_001356477, intron 1 of 6)	3797.0	NM_001356477	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	36.04	33.64	29.6	37.78	27.52	23.31	6.34	1.33	6.87
Merged-chr4-144973466-3	chr4	144972974	144973974	+	694.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	80337.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	6.29	4.61	8.32	4.05	3.73	0.8	8.45	0.88	3.75
Merged-chr12-117385907-3	chr12	117385424	117386424	+	694.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48912.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	38.33	84.78	37.0	19.57	28.92	20.9	7.39	10.61	11.24
Merged-chrX-99045490-3	chrX	99044970	99045970	+	694.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199018, intron 1 of 13)	intron (NM_199018, intron 1 of 13)	2889.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	24.6	40.09	38.85	45.21	24.72	40.99	36.97	46.87	32.48
Merged-chrX-13132152-2	chrX	13131638	13132638	+	694.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009481, exon 23 of 45)	exon (NM_009481, exon 23 of 45)	60640.0	NM_009481	22284.0	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	15.45	14.28	18.5	7.42	9.33	4.82	9.51	19.01	7.49
Merged-chr11-72946143-2	chr11	72945643	72946643	+	694.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15026.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	13.73	10.6	9.25	14.84	7.93	9.65	17.96	10.17	6.25
Merged-chr1-33739436-2	chr1	33738919	33739919	+	694.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008999, exon 8 of 8)	3' UTR (NM_008999, exon 8 of 8)	18331.0	NM_145392	213539.0	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	8.58	2.76	6.47	2.7	0.47	3.22	5.28	3.1	1.25
Merged-chr7-16453392-3	chr7	16452955	16453955	+	694.711121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026938, intron 1 of 2)	intron (NM_026938, intron 1 of 2)	676.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	22.88	30.41	28.67	34.41	25.19	47.42	27.46	21.67	24.36
Merged-chr5-99245525-4	chr5	99245047	99246047	+	694.708313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	7380.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	92.1	86.63	77.7	107.28	77.91	103.69	104.56	114.08	69.32
Merged-chr13-29650841-3	chr13	29650378	29651378	+	694.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131896, intron 8 of 16)	L1MEc|LINE|L1	204795.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	24.6	17.05	11.1	37.78	31.72	28.94	13.73	13.27	18.11
Merged-chr14-52098556-3	chr14	52098065	52099065	+	694.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	5456.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	21.74	23.04	5.55	22.94	12.13	18.49	17.96	15.48	16.86
Merged-chr18-53845615-1	chr18	53845115	53846115	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16498.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	5.72	2.3	9.25	4.72	4.67	8.04	3.17	4.86	3.75
Merged-chr12-80197656-3	chr12	80197171	80198171	+	694.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	62700.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	8.01	3.69	4.62	6.75	0.47	8.04	5.28	6.63	8.12
Merged-chr1-37475513-2	chr1	37475011	37476011	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	intron (NM_173870, intron 5 of 15)	13094.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	67.5	67.27	41.62	78.27	58.78	69.93	88.72	96.83	68.07
Merged-chr19-12513201-1	chr19	12512701	12513701	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-11205.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	6.29	3.69	1.85	6.75	4.67	1.61	3.17	2.65	3.12
Merged-chr4-34764905-1	chr4	34764405	34765405	+	694.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-8646.0	NM_001033255	214568.0	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	5.72	3.23	1.85	10.8	1.4	0.8	4.22	3.98	9.37
Merged-chr2-173546496-2	chr2	173546010	173547010	+	694.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23918.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.57	3.23	0.0	2.7	2.8	3.22	2.11	1.33	0.62
Merged-chr6-87543433-3	chr6	87542914	87543914	+	694.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-10155.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	56.63	63.59	48.1	59.38	32.19	60.28	84.49	65.88	57.46
Merged-chr19-37419741-2	chr19	37419236	37420236	+	694.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010615, intron 21 of 21)	intron (NM_010615, intron 21 of 21)	-15105.0	NM_008245	15242.0	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	4.0	6.45	3.7	8.1	5.13	1.61	4.22	3.98	0.0
Merged-chr13-11904820-3	chr13	11904345	11905345	+	694.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	202100.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	8.58	12.44	14.8	4.05	3.73	6.43	10.56	13.27	1.25
Merged-chr14-30216854-2	chr14	30216355	30217355	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136631.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	13.16	10.14	16.65	19.57	13.53	7.23	10.56	9.29	14.36
Merged-chr11-55433217-1	chr11	55432717	55433717	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13137.0	NM_001290817	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	9.72	11.52	7.4	7.42	7.0	14.47	12.67	8.84	9.99
Merged-chr2-104422429-2	chr2	104421911	104422911	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6529.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	8.58	5.07	3.7	4.05	3.27	8.04	5.28	3.1	3.12
Merged-chr1-171492060-1	chr1	171491560	171492560	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-11418.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	7.44	1.84	8.32	3.37	2.8	4.82	2.11	2.21	8.12
Merged-chr16-23235517-2	chr16	23235006	23236006	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 1 of 7)	intron (NM_001252505, intron 1 of 7)	9485.0	NM_001252505	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	11.44	7.83	3.7	16.87	7.0	11.25	16.9	8.84	6.25
Merged-chr11-19823684-2	chr11	19823163	19824163	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100779.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	6.29	4.15	0.0	2.7	3.27	0.8	6.34	0.44	1.87
Merged-chr2-68364646-1	chr2	68364146	68365146	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 8 of 17)	intron (NM_016866, intron 8 of 17)	107335.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.29	3.23	1.85	3.37	2.8	8.04	4.22	2.65	1.25
Merged-chr8-106737049-2	chr8	106736551	106737551	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 12 of 17)	L2b|LINE|L2	53983.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	6.86	2.3	5.55	8.77	3.73	0.8	5.28	3.1	1.25
Merged-chr2-90535281-1	chr2	90534781	90535781	+	694.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	ID4|SINE|ID	45366.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	10.87	23.96	40.7	18.89	20.06	28.13	45.42	28.74	30.6
Merged-chr18-43493882-2	chr18	43493387	43494387	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55601.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.0	6.45	0.0	7.42	1.4	0.0	5.28	4.42	4.37
Merged-chr7-113289386-3	chr7	113288883	113289883	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357070, intron 9 of 19)	L3|LINE|CR1	79956.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	1.72	1.84	3.7	1.35	0.93	4.02	0.0	2.21	3.75
Merged-chr17-50889668-1	chr17	50889168	50890168	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 13 of 21)	intron (NM_028162, intron 13 of 21)	190987.0	NM_001297747	12228.0	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	2.86	2.3	7.4	4.72	4.2	6.43	2.11	6.63	1.25
Merged-chr8-69093040-3	chr8	69092493	69093493	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-3771.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	61.21	47.0	26.82	53.3	48.98	39.39	78.16	59.25	33.72
Merged-chr18-67133579-2	chr18	67133062	67134062	+	694.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010307)	promoter-TSS (NM_010307)	2.0	NM_010307	14680.0	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	4.58	3.23	3.7	2.02	2.8	6.43	3.17	0.0	4.37
Merged-chr8-117471402-2	chr8	117470931	117471931	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12166.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	6.86	2.3	1.85	6.75	0.93	3.22	2.11	3.1	3.75
Merged-chr7-45491487-1	chr7	45490987	45491987	+	694.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290999, intron 1 of 9)	intron (NM_001290999, intron 1 of 9)	-2682.0	NM_027903	71755.0	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|B830008H07Rik|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	17.16	15.21	12.02	12.82	9.8	17.68	28.52	34.93	23.11
Merged-chr7-88242759-3	chr7	88242263	88243263	+	694.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35322.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	106.97	110.59	85.1	105.93	97.97	106.9	127.8	148.13	81.81
Merged-chr4-133513191-2	chr4	133512694	133513694	+	694.474976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5769.0	NM_001083916	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	2.86	5.53	3.7	8.77	2.33	1.61	3.17	1.77	3.75
Merged-chr11-46431372-3	chr11	46430881	46431881	+	694.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5566.0	NM_001104557	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	4.0	2.3	3.7	3.37	0.0	2.41	3.17	0.88	0.62
Merged-chr10-126869803-3	chr10	126869306	126870306	+	694.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026858, intron 5 of 5)	intron (NM_026858, intron 5 of 5)	31565.0	NM_026858	68876.0	Mm.276769	NM_026858	ENSMUSG00000025436	Atp23	1110068E08Rik|2410012H02Rik|Xrcc6bp1	ATP23 metallopeptidase and ATP synthase assembly factor homolog	protein-coding	4.58	1.84	1.85	11.47	3.73	9.65	4.22	0.44	7.49
Merged-chr3-9605960-2	chr3	9605500	9606500	+	694.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	4085.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.86	0.46	0.92	4.72	2.33	4.02	0.0	1.33	3.12
Merged-chrX-93793366-2	chrX	93792869	93793869	+	694.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145630, intron 5 of 11)	B3|SINE|B2	38726.0	NM_145630	236900.0	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	1.72	0.46	0.0	3.37	1.87	0.0	4.22	1.77	7.49
Merged-chr5-108082553-1	chr5	108082053	108083053	+	694.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253879, intron 3 of 14)	B2_Mm2|SINE|B2	4388.0	NM_001253878	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	5.15	5.53	1.85	7.42	1.87	3.22	7.39	3.54	2.5
Merged-chr4-115738744-2	chr4	115738166	115739166	+	694.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172698, exon 1 of 12)	exon (NM_172698, exon 1 of 12)	593.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	37.18	51.61	22.2	41.83	39.19	45.82	44.36	47.75	22.48
Merged-chr1-88252928-4	chr1	88252303	88253303	+	694.354187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281466, intron 31 of 41)	intron (NM_001281466, intron 31 of 41)	16605.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	13.73	4.61	8.32	8.77	5.6	23.31	11.62	6.19	20.61
Merged-chr12-54794031-2	chr12	54793553	54794553	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026998, intron 2 of 13)	B3A|SINE|B2	1609.0	NM_026998	72183.0	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	28.6	48.38	49.95	38.46	31.26	35.37	50.7	35.37	30.6
Merged-chr4-59259949-2	chr4	59259450	59260450	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105031)	promoter-TSS (NR_105031)	-101.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	18.31	16.59	18.5	16.87	8.86	17.68	16.9	11.5	17.49
Merged-chr6-83583122-2	chr6	83582614	83583614	+	694.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_078345, intron 6 of 7)	Lx8|LINE|L1	-10610.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	12.01	6.91	0.92	5.4	2.8	9.65	8.45	3.98	6.25
Merged-chr12-82334159-1	chr12	82333659	82334659	+	694.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167983, intron 4 of 23)	intron (NM_001167983, intron 4 of 23)	22810.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.72	3.23	0.0	2.7	3.73	2.41	1.06	3.54	2.5
Merged-chr2-6162841-1	chr2	6162341	6163341	+	694.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29958.0	NR_033471	100038358.0	Mm.353975	NR_033470	ENSMUSG00000102887	Gm10857	AU015850	predicted gene 10857	ncRNA	4.58	0.46	1.85	4.72	1.87	3.22	1.06	1.77	1.25
Merged-chr12-4161496-1	chr12	4160996	4161996	+	694.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159537, intron 2 of 21)	URR1B|DNA|hAT-Charlie	27343.0	NM_138305	104111.0	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	43.48	65.43	34.22	87.04	76.51	90.02	57.03	54.83	21.23
Merged-chr14-27230905-2	chr14	27230403	27231403	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-7107.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	35.47	36.86	22.2	62.75	40.59	28.94	29.57	36.7	10.62
Merged-chr4-149875538-2	chr4	149875076	149876076	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	79430.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	6.86	8.29	7.4	18.22	13.06	15.27	26.4	17.24	20.61
Merged-chr6-108556046-2	chr6	108555549	108556549	+	694.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66306.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	28.6	32.25	26.82	26.31	23.79	38.58	58.09	39.8	19.98
Merged-chr5-67820999-2	chr5	67820471	67821471	+	694.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	26460.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	69.22	82.48	61.05	80.29	52.72	40.99	74.99	89.32	28.73
Merged-chr8-94492193-1	chr8	94491693	94492693	+	694.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033207, intron 18 of 48)	intron (NM_001033207, intron 18 of 48)	-12853.0	NR_106040	102466800.0		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	4.58	2.3	1.85	4.72	4.67	1.61	4.22	1.33	2.5
Merged-chr14-33313842-3	chr14	33313341	33314341	+	694.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	97018.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	1.14	4.61	0.0	6.07	1.87	6.43	3.17	0.44	1.25
Merged-chr12-86924002-3	chr12	86923520	86924520	+	694.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23021.0	NM_001289431	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	2.29	1.38	3.7	2.02	3.27	1.61	3.17	2.65	0.0
Merged-chr18-35745843-2	chr18	35745323	35746323	+	694.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5269.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	43.48	49.3	35.15	44.53	34.99	54.66	57.03	54.39	39.97
Merged-chr8-35104926-1	chr8	35104426	35105426	+	694.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-139236.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	2.29	3.69	0.0	0.0	1.87	6.43	3.17	2.21	5.62
Merged-chr19-6279089-4	chr19	6278718	6279718	+	694.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	2322.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	34.32	30.41	13.87	26.99	11.66	21.7	20.07	11.05	23.73
Merged-chr8-14605674-1	chr8	14605174	14606174	+	694.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-282862.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	2.29	3.69	0.0	5.4	5.6	4.02	2.11	1.33	1.25
Merged-chr12-84337483-2	chr12	84336978	84337978	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144833, intron 8 of 11)	intron (NM_144833, intron 8 of 11)	20619.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	7.44	7.37	8.32	8.1	3.27	13.66	7.39	3.1	4.37
Merged-chr2-102967112-2	chr2	102966617	102967617	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-65452.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	85.24	82.48	61.97	125.5	81.64	124.59	102.45	80.03	91.18
Merged-chr7-45081319-2	chr7	45080809	45081809	+	694.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	10904.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	8.58	15.67	11.1	14.84	27.06	35.37	12.67	20.78	29.35
Merged-chr2-24316978-2	chr2	24316471	24317471	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-19889.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	5.15	6.91	1.85	8.1	3.27	11.25	8.45	3.1	8.74
Merged-chr11-69945390-2	chr11	69944870	69945870	+	694.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009204, exon 7 of 11)	exon (NM_009204, exon 7 of 11)	2820.0	NM_009204	20528.0	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	GT2|Glut-4|Glut4|twgy	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	2.86	1.38	5.55	2.02	0.93	8.04	1.06	0.44	1.25
Merged-chr16-33397283-2	chr16	33396764	33397764	+	694.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358570, intron 1 of 8)	intron (NM_001358570, intron 1 of 8)	-3181.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	20.02	7.83	17.57	12.14	8.4	11.25	10.56	10.61	8.74
Merged-chrX-129750260-3	chrX	129749792	129750792	+	694.155579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	CpG	550.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	57.78	56.22	46.25	54.65	47.58	69.13	63.37	70.3	70.57
Merged-chr16-87717447-3	chr16	87716941	87717941	+	694.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007520, intron 2 of 4)	L1MD2|LINE|L1	18487.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	32.04	28.11	38.85	36.43	25.66	26.53	41.19	53.5	28.1
Merged-chr19-41337018-3	chr19	41336505	41337505	+	694.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	48065.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	76.66	61.75	58.27	80.97	48.52	62.7	95.06	80.03	58.71
Merged-chr2-84620644-1	chr2	84620144	84621144	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355064, intron 4 of 18)	intron (NM_001355064, intron 4 of 18)	28836.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	18.31	26.73	47.17	34.41	13.06	52.25	27.46	29.18	36.85
Merged-chr17-34186937-3	chr17	34186416	34187416	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013683)	promoter-TSS (NM_013683)	414.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	221.96	255.27	172.97	137.64	144.62	130.21	198.56	268.4	139.27
Merged-chr9-94361321-1	chr9	94360821	94361821	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176760.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	22.31	15.21	12.95	7.42	9.8	21.7	13.73	3.98	8.74
Merged-chr16-49853839-1	chr16	49853339	49854339	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1815.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	184.2	108.28	71.22	182.17	92.37	109.32	178.5	165.37	99.3
Merged-chr10-67265036-1	chr10	67264536	67265536	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20245.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	10.3	1.38	9.25	9.45	5.6	12.06	7.39	2.21	1.25
Merged-chr10-121489295-1	chr10	121488795	121489795	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-13045.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	101.83	99.99	94.35	95.14	82.57	105.3	62.31	75.61	60.58
Merged-chr17-50996470-3	chr17	50995975	50996975	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	162903.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	27.46	40.09	23.12	14.84	19.13	23.31	24.29	34.93	21.86
Merged-chr12-73045449-1	chr12	73044949	73045949	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009189, intron 1 of 1)	CpG	1263.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	1.72	5.07	5.55	2.02	4.2	3.22	3.17	0.44	1.25
Merged-chr17-25809019-1	chr17	25808519	25809519	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164225)	promoter-TSS (NM_001164225)	-66.0	NM_001164225	214931.0	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	4.58	1.84	0.0	6.75	0.93	1.61	3.17	0.0	3.75
Merged-chr4-123665181-1	chr4	123664681	123665681	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_136925)	promoter-TSS (NR_136925)	-700.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	61.21	43.31	76.77	57.35	48.52	69.13	92.94	38.91	49.34
Merged-chr3-130946306-1	chr3	130945806	130946806	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-163991.0	NM_010703	16842.0	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	2.29	4.15	5.55	8.77	8.86	9.65	6.34	1.33	4.37
Merged-chr15-64512887-1	chr15	64512387	64513387	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129968.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.57	1.84	4.62	2.02	1.87	3.22	4.22	0.0	1.25
Merged-chr1-44034500-2	chr1	44033989	44034989	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-14483.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	10.87	0.92	0.0	4.72	3.73	0.0	5.28	1.77	6.25
Merged-chr15-73351236-1	chr15	73350736	73351736	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358046, intron 2 of 34)	intron (NM_001358046, intron 2 of 34)	71955.0	NM_007982	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.29	4.15	14.8	2.7	6.53	9.65	10.56	7.96	8.74
Merged-chr8-92858694-1	chr8	92858194	92859194	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357375, intron 1 of 12)	intron (NM_001357375, intron 1 of 12)	3361.0	NM_001357374	270084.0	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	2.29	8.29	9.25	8.1	5.13	8.04	5.28	8.84	6.25
Merged-chr5-139558562-1	chr5	139558062	139559062	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14664.0	NM_013702	22255.0	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	6.29	4.15	0.92	5.4	6.06	7.23	2.11	0.88	0.62
Merged-chr6-31413107-1	chr6	31412607	31413607	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 1 of 17)	intron (NM_013791, intron 1 of 17)	14279.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	21.17	15.67	16.65	41.16	15.39	17.68	33.8	12.82	18.74
Merged-chr5-29435200-1	chr5	29434700	29435700	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033457, exon 1 of 11)	exon (NM_001033457, exon 1 of 11)	533.0	NM_001033457	433864.0	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	136.15	139.62	119.32	133.59	160.48	143.07	136.25	107.89	91.18
Merged-chr10-57721668-1	chr10	57721168	57722168	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63255.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	70.36	72.34	42.55	74.22	62.05	69.13	84.49	87.99	59.95
Merged-chr17-34265162-2	chr17	34264707	34265707	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207105, intron 2 of 5)	intron (NM_207105, intron 2 of 5)	1980.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	33.18	28.11	65.67	26.99	12.13	10.45	34.85	15.03	23.73
Merged-chr6-116712265-2	chr6	116711757	116712757	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178768, intron 1 of 4)	intron (NM_178768, intron 1 of 4)	4501.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.57	4.61	0.0	3.37	5.13	1.61	7.39	10.61	2.5
Merged-chr13-5866438-2	chr13	5865943	5866943	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 2 of 3)	intron (NM_011803, intron 2 of 3)	4954.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	36.61	44.7	25.9	36.43	24.72	32.96	32.74	15.03	23.11
Merged-chr11-69414199-1	chr11	69413699	69414699	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001017426)	promoter-TSS (NM_001017426)	-524.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	47.48	33.64	30.52	53.3	27.99	24.11	40.14	49.52	21.23
Merged-chr6-65608902-1	chr6	65608402	65609402	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001495, intron 6 of 7)	intron (NM_001001495, intron 6 of 7)	18504.0	NM_001001495	414084.0	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	2.29	2.3	1.85	2.7	2.8	0.0	2.11	4.42	5.0
Merged-chr6-52213266-1	chr6	52212766	52213766	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010452)	promoter-TSS (NM_010452)	-199.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	1.72	0.92	3.7	7.42	4.2	4.02	4.22	3.1	3.75
Merged-chr6-54282527-1	chr6	54282027	54283027	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 7 of 12)	Lx8|LINE|L1	9705.0	NM_023543	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	11.44	7.83	13.87	10.8	8.86	6.43	8.45	7.07	2.5
Merged-chr8-108981648-2	chr8	108981145	108982145	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F2-int|LTR|ERVL-MaLR	44785.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	18.31	13.36	23.12	18.89	9.8	8.84	43.3	25.2	34.35
Merged-chr6-52060768-1	chr6	52060268	52061268	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42181.0	NR_110440	102635415.0	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	1.14	4.61	0.0	4.72	2.8	1.61	4.22	0.44	6.87
Merged-chr6-142989715-1	chr6	142989215	142990215	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25263.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.0	1.84	0.0	6.07	3.73	1.61	3.17	2.21	0.62
Merged-chr1-54944836-1	chr1	54944336	54945336	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER121|DNA|TcMar?	-18449.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.29	2.76	3.7	5.4	3.73	1.61	3.17	3.1	1.25
Merged-chr2-125795322-1	chr2	125794822	125795822	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-12452.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	1.14	1.84	0.0	8.1	1.4	0.0	15.84	4.86	9.37
Merged-chr4-72380310-1	chr4	72379810	72380810	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	179066.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	123.56	144.23	92.5	126.17	111.5	137.45	121.46	149.89	98.68
Merged-chr11-43544215-1	chr11	43543715	43544715	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045530, intron 2 of 5)	intron (NM_001045530, intron 2 of 5)	15466.0	NM_001045530	380694.0	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	4.0	0.92	3.7	4.05	1.4	3.22	2.11	0.88	2.5
Merged-chr16-10488586-1	chr16	10488086	10489086	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007575, intron 1 of 18)	intron (NM_007575, intron 1 of 18)	408.0	NM_007575	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	37.18	36.4	46.25	18.22	13.53	26.53	38.02	52.62	34.97
Merged-chr14-47352969-1	chr14	47352469	47353469	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20891.0	NM_010705	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	45.19	35.48	47.17	62.75	45.72	65.91	72.88	53.5	29.35
Merged-chr4-7392649-1	chr4	7392149	7393149	+	694.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-168039.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	9.15	8.29	9.25	8.77	4.67	7.23	6.34	12.38	8.12
Merged-chr1-161033957-1	chr1	161033457	161034457	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153814)	promoter-TSS (NR_153814)	892.0	NM_001356489	240869.0	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	41.19	48.38	44.4	40.48	52.72	72.34	19.01	13.27	16.24
Merged-chr4-102649190-1	chr4	102648690	102649690	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	59347.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	18.88	19.81	9.25	19.57	9.8	11.25	7.39	4.42	3.75
Merged-chr6-29769155-2	chr6	29768638	29769638	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	CpG	695.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	84.66	64.97	43.47	91.09	63.45	65.91	118.29	91.53	71.2
Merged-chr8-71308787-2	chr8	71308305	71309305	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	intron (NM_001142322, intron 2 of 39)	36091.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	57.21	51.61	63.82	73.54	61.58	96.45	68.65	52.18	53.71
Merged-chr7-143628709-2	chr7	143628197	143629197	+	694.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175649)	promoter-TSS (NM_175649)	627.0	NR_153817	414103.0	Mm.446579	NR_153817		E230032D23Rik	-	RIKEN cDNA E230032D23 gene	ncRNA	78.94	124.41	80.47	62.07	84.44	85.2	117.24	124.25	69.95
Merged-chr3-142744212-1	chr3	142743712	142744712	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001293560, exon 14 of 14)	3' UTR (NM_001293560, exon 14 of 14)	-21035.0	NM_145546	229906.0	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	2.86	0.92	0.0	1.35	5.13	1.61	2.11	0.0	0.0
Merged-chr10-95803380-1	chr10	95802880	95803880	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-137283.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	9.72	6.45	16.65	12.14	7.0	35.37	20.07	20.78	16.86
Merged-chr17-88450714-1	chr17	88450214	88451214	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355742, intron 1 of 5)	MTA_Mm|LTR|ERVL-MaLR	10010.0	NM_001355742	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	3.43	3.23	11.1	2.7	4.67	3.22	4.22	2.65	3.12
Merged-chr2-178058445-1	chr2	178057945	178058945	+	694.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19980.0	NM_001162922	353208.0	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	2.86	1.84	6.47	1.35	4.2	4.82	1.06	2.21	2.5
Merged-chr1-181125344-3	chr1	181124827	181125827	+	693.966675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026171, intron 10 of 22)	ORR1D1|LTR|ERVL-MaLR	18877.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	3.43	5.99	0.0	6.07	7.93	1.61	9.51	10.17	16.24
Merged-chr16-30764356-2	chr16	30763853	30764853	+	693.950012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	164630.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	7.44	6.45	11.1	10.8	11.66	30.54	15.84	13.71	9.99
Merged-chr2-91924228-3	chr2	91923717	91924717	+	693.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	2028.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.43	1.38	0.0	8.77	0.93	0.8	7.39	3.98	0.62
Merged-chr12-100422759-2	chr12	100422268	100423268	+	693.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 5 of 19)	intron (NM_001033213, intron 5 of 19)	98054.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	13.73	17.51	9.25	26.31	20.06	16.08	17.96	6.19	11.24
Merged-chr11-9317468-2	chr11	9316958	9317958	+	693.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178259, intron 23 of 61)	intron (NM_178259, intron 23 of 61)	125516.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	3.43	2.76	0.0	2.02	5.13	1.61	6.34	0.44	0.62
Merged-chr19-6271455-3	chr19	6270943	6271943	+	693.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5453.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	13.73	8.29	7.4	6.75	11.66	3.22	15.84	4.42	9.99
Merged-chr8-19161031-2	chr8	19160529	19161529	+	693.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3142.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	3.43	6.91	6.47	2.02	6.53	11.25	3.17	5.31	7.49
Merged-chr11-58225874-2	chr11	58225396	58226396	+	693.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10919.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	14.87	15.67	9.25	9.45	7.93	16.88	13.73	8.84	18.74
Merged-chr13-91809628-3	chr13	91809114	91810114	+	693.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1918.0	NM_145453	69085.0	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	8.58	2.76	7.4	7.42	5.13	6.43	12.67	3.98	9.99
Merged-chr17-28079906-3	chr17	28079429	28080429	+	693.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013687, exon 2 of 10)	exon (NM_013687, exon 2 of 10)	655.0	NM_001357681	21463.0	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	7.44	2.76	5.55	5.4	3.73	2.41	2.11	0.88	1.25
Merged-chr4-41468829-3	chr4	41468333	41469333	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025539, intron 1 of 2)	intron (NM_025539, intron 1 of 2)	3685.0	NM_025539	66401.0	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	16.59	15.21	12.95	18.22	9.33	15.27	7.39	6.19	9.99
Merged-chr1-92106873-3	chr1	92106361	92107361	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	73480.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	7.44	7.83	7.4	11.47	5.6	8.04	2.11	1.77	9.37
Merged-chr7-125495997-3	chr7	125495471	125496471	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4429.0	NM_026330	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	31.46	43.77	43.47	26.99	26.59	27.33	61.26	42.89	39.35
Merged-chr2-44983040-3	chr2	44982597	44983597	+	693.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355289)	TTS (NM_001355289)	40080.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	17.73	15.21	12.02	8.1	7.46	12.06	11.62	8.4	12.49
Merged-chr11-5759168-2	chr11	5758672	5759672	+	693.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	Lx8b|LINE|L1	-2978.0	NR_015577	76508.0	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	40.62	44.7	39.77	30.36	47.58	48.23	28.52	18.13	8.74
Merged-chr15-50751257-2	chr15	50750739	50751739	+	693.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	137810.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.01	5.07	1.85	12.14	9.33	1.61	8.45	10.17	7.49
Merged-chr7-24564862-2	chr7	24564363	24565363	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360168, intron 4 of 17)	intron (NM_001360168, intron 4 of 17)	13376.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	1.72	1.84	0.0	2.02	3.27	1.61	1.06	2.21	1.25
Merged-chr6-124672374-2	chr6	124671875	124672875	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	9271.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	13.16	8.29	0.0	8.1	9.8	10.45	8.45	9.29	11.24
Merged-chr3-94949961-1	chr3	94949461	94950461	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA8|LINE|L1	-4147.0	NM_017395	53970.0	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	10.3	10.14	4.62	12.82	7.0	3.22	8.45	18.13	9.99
Merged-chr5-124354805-2	chr5	124354318	124355318	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013812)	promoter-TSS (NM_013812)	-190.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	17.73	11.52	10.17	23.62	14.0	28.94	19.01	8.4	16.86
Merged-chr9-45306943-2	chr9	45306454	45307454	+	693.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12146.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	1.14	2.76	0.0	5.4	1.87	9.65	2.11	4.86	3.75
Merged-chr8-106106416-3	chr8	106105900	106106900	+	693.744446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010901, intron 8 of 9)	intron (NM_010901, intron 8 of 9)	-29000.0	NR_040345	69771.0	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	22.31	15.67	3.7	12.82	8.4	8.84	22.18	20.78	8.74
Merged-chr10-80566478-3	chr10	80565958	80566958	+	693.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_078477)	TTS (NM_078477)	-4898.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	5.72	4.15	5.55	6.75	1.4	3.22	0.0	0.88	1.25
Merged-chr12-17710283-1	chr12	17709783	17710783	+	693.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	19474.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	10.87	15.67	31.45	6.07	6.06	31.35	71.82	35.82	31.23
Merged-chr4-154163485-1	chr4	154162985	154163985	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2801.0	NM_026388	67808.0	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	3.43	1.84	3.7	2.02	0.93	1.61	3.17	0.44	2.5
Merged-chr17-35178725-3	chr17	35178236	35179236	+	693.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2684.0	NM_001361501	11629.0	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	9.15	3.69	9.25	7.42	5.6	4.82	3.17	5.31	1.25
Merged-chr3-97930607-1	chr3	97930107	97931107	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	434.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	10.3	13.36	25.9	14.84	12.13	11.25	10.56	10.61	9.99
Merged-chr4-43509477-3	chr4	43508997	43509997	+	693.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013377)	promoter-TSS (NM_001013377)	-750.0	NM_001013377	230098.0	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	61.21	53.91	28.67	66.8	62.05	57.07	38.02	60.58	39.35
Merged-chr1-54933737-1	chr1	54933237	54934237	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7350.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	9.15	2.3	3.7	10.12	1.87	7.23	5.28	3.1	2.5
Merged-chr6-52240561-1	chr6	52240061	52241061	+	693.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001122950, exon 1 of 2)	5' UTR (NM_001122950, exon 1 of 2)	293.0	NM_001122950	15395.0	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	2.86	0.92	1.85	0.67	2.8	1.61	1.06	1.33	1.25
Merged-chr11-50042796-2	chr11	50042307	50043307	+	693.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	17476.0	NM_001290750	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	76.08	59.44	73.07	51.95	42.92	52.25	52.81	61.9	75.57
Merged-chr14-54712176-2	chr14	54711680	54712680	+	693.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207131)	promoter-TSS (NM_207131)	-6.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	4.58	3.69	6.47	2.7	2.8	2.41	8.45	2.65	5.0
Merged-chr14-43830599-3	chr14	43830104	43831104	+	693.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-10965.0	NM_007894	13586.0	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	5.15	5.53	0.0	4.72	1.4	4.82	1.06	2.21	1.25
Merged-chr7-109210017-3	chr7	109209487	109210487	+	693.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34780.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	24.03	21.2	19.42	29.01	22.86	32.15	29.57	16.8	21.23
Merged-chr13-98867446-3	chr13	98866979	98867979	+	693.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178716, intron 7 of 23)	intron (NM_178716, intron 7 of 23)	23563.0	NM_001048267	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	33.75	13.82	11.1	20.24	9.8	15.27	12.67	10.17	9.37
Merged-chr1-137922895-3	chr1	137922336	137923336	+	693.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43619.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	8.58	14.28	6.47	21.59	19.13	31.35	32.74	27.41	8.74
Merged-chr1-171101400-2	chr1	171100906	171101906	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20255.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	9.72	5.07	5.55	9.45	5.13	1.61	1.06	3.1	5.0
Merged-chr5-33921136-1	chr5	33920636	33921636	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011914, intron 2 of 10)	intron (NM_011914, intron 2 of 10)	15122.0	NM_011914	24116.0	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	6.29	4.15	6.47	8.1	6.53	8.04	6.34	3.98	7.49
Merged-chr18-56716429-1	chr18	56715929	56716929	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	8616.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	9.72	5.99	7.4	11.47	8.86	5.63	10.56	8.84	11.24
Merged-chr2-166732388-2	chr2	166731906	166732906	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18574.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	18.31	11.06	3.7	24.29	9.8	8.84	21.12	18.13	14.99
Merged-chr1-171112071-2	chr1	171111546	171112546	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9615.0	NM_001081275	75472.0	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	32.04	47.0	37.92	51.95	42.92	67.52	55.98	54.83	47.46
Merged-chr3-28015962-2	chr3	28015459	28016459	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 1 of 25)	intron (NM_008875, intron 1 of 25)	31788.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	15.45	14.28	13.87	20.24	7.93	23.31	32.74	25.2	13.74
Merged-chr12-80113913-2	chr12	80113396	80114396	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007564)	promoter-TSS (NM_007564)	-883.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	223.1	231.31	160.02	196.34	118.49	177.64	226.02	204.72	173.62
Merged-chr11-103247746-2	chr11	103247246	103248246	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	19655.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	53.2	45.16	27.75	58.7	42.92	57.07	31.69	56.6	41.22
Merged-chr6-87724463-1	chr6	87723963	87724963	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6406.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	24.6	15.67	24.97	35.09	20.99	18.49	16.9	13.27	19.98
Merged-chr3-96558410-1	chr3	96557910	96558910	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023719, exon 1 of 8)	exon (NM_023719, exon 1 of 8)	453.0	NM_001009935	56338.0	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	137.29	139.62	108.22	92.44	70.91	111.73	178.5	198.53	128.65
Merged-chr11-98075550-2	chr11	98075063	98076063	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22101.0	NM_146028	217154.0	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	2.29	2.76	1.85	3.37	6.53	0.0	4.22	0.0	4.37
Merged-chr6-108417700-2	chr6	108417192	108418192	+	693.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 38 of 61)	intron (NM_010585, intron 38 of 61)	-72051.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.0	3.23	2.77	9.45	3.73	0.0	3.17	4.86	5.0
Merged-chr18-35598097-1	chr18	35597597	35598597	+	693.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357472)	promoter-TSS (NM_001357472)	-520.0	NM_001357470	67869.0	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	34.32	35.48	38.85	38.46	17.26	18.49	21.12	23.43	24.36
Merged-chr11-4080418-3	chr11	4079916	4080916	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	15015.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	2.86	1.38	3.7	7.42	2.8	4.02	3.17	1.33	4.37
Merged-chr2-58865366-3	chr2	58864856	58865856	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 11 of 13)	RMER1B|Other|Other	110172.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	9.72	11.06	8.32	18.89	10.73	16.08	12.67	9.73	8.74
Merged-chr14-61650490-3	chr14	61650036	61651036	+	693.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	-18426.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	72.08	89.39	47.17	68.15	41.05	73.95	90.83	103.91	68.07
Merged-chr15-80798008-3	chr15	80797516	80798516	+	693.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177124)	promoter-TSS (NM_177124)	-594.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	63.5	76.03	51.8	66.12	73.71	58.68	102.45	121.6	26.23
Merged-chr11-49245385-3	chr11	49244888	49245888	+	693.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010794, exon 2 of 3)	5' UTR (NM_010794, exon 2 of 3)	1197.0	NM_001110148	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	49.2	58.06	32.37	52.63	48.05	44.21	53.87	53.5	35.6
Merged-chr5-96244715-3	chr5	96244226	96245226	+	693.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053158, intron 7 of 8)	L1ME1|LINE|L1	34611.0	NM_053158	94061.0	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	12.59	5.07	0.92	10.8	9.33	12.86	8.45	9.29	8.74
Merged-chr3-59263828-2	chr3	59263310	59264310	+	693.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357008)	promoter-TSS (NM_001357008)	-825.0	NM_001357010	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	101.25	196.75	113.77	87.71	89.1	95.65	155.26	152.55	100.55
Merged-chr2-3427771-2	chr2	3427193	3428193	+	693.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302674, intron 2 of 13)	intron (NM_001302674, intron 2 of 13)	3562.0	NM_001302684	227525.0	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	26.31	31.33	32.37	26.99	18.19	28.13	24.29	19.46	21.86
Merged-chr14-36316823-2	chr14	36316270	36317270	+	693.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	221805.0	NM_175008	218921.0	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	6.29	1.84	0.92	4.05	0.47	4.02	4.22	3.54	5.62
Merged-chr14-33808703-2	chr14	33808217	33809217	+	693.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131113, intron 3 of 3)	MER121|DNA|TcMar?	2566.0	NR_131114	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	2.29	3.69	0.0	2.7	2.33	3.22	6.34	1.33	8.74
Merged-chr1-159233743-2	chr1	159233199	159234199	+	693.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 1 of 19)	intron (NM_011931, intron 1 of 19)	1499.0	NM_011931	26374.0	Mm.328135	NM_011931	ENSMUSG00000040782	Cop1	AI316802|C80879|Rfwd2	COP1, E3 ubiquitin ligase	protein-coding	44.62	91.7	39.77	52.63	50.38	70.73	58.09	72.52	54.33
Merged-chr1-157386697-1	chr1	157386197	157387197	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	intron (NM_177644, intron 1 of 17)	-25655.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	6.29	5.99	3.7	14.84	8.4	13.66	7.39	6.19	9.99
Merged-chr4-89146510-1	chr4	89146010	89147010	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024433, intron 1 of 7)	intron (NM_024433, intron 1 of 7)	9140.0	NM_024433	66902.0	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	4.58	4.15	3.7	2.7	3.73	3.22	0.0	1.77	4.37
Merged-chr3-89963431-3	chr3	89962872	89963872	+	693.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081182)	promoter-TSS (NM_001081182)	-40.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	14.87	10.14	11.1	14.17	7.0	3.22	12.67	4.86	8.74
Merged-chr13-119602066-1	chr13	119601566	119602566	+	693.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-21753.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	8.01	4.15	1.85	28.34	10.26	25.72	12.67	4.86	18.74
Merged-chr10-111503269-2	chr10	111502763	111503763	+	693.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2475.0	NR_033603	382421.0	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	8.58	1.38	1.85	1.35	4.2	4.82	3.17	0.88	1.25
Merged-chr10-94828079-3	chr10	94827584	94828584	+	693.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 20 of 30)	intron (NM_018797, intron 20 of 30)	116494.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	17.16	9.68	2.77	16.19	6.53	0.0	5.28	3.98	9.99
Merged-chr19-46563152-2	chr19	46562653	46563653	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355233, intron 1 of 6)	intron (NM_001355233, intron 1 of 6)	10029.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	15.45	20.27	20.35	27.66	15.86	22.51	39.08	28.3	14.36
Merged-chr3-87361350-2	chr3	87360843	87361843	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	3462.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	61.21	52.99	60.12	62.75	41.05	70.73	166.88	156.97	48.71
Merged-chr4-86548499-2	chr4	86547989	86548989	+	693.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	9814.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	1.14	3.23	0.0	2.7	0.47	1.61	2.11	0.88	2.5
Merged-chr6-116632281-2	chr6	116631796	116632796	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178045)	TTS (NM_178045)	-3297.0	NM_026057	67255.0	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	6.29	5.53	15.72	6.07	2.8	9.65	11.62	7.07	11.24
Merged-chr6-49035953-2	chr6	49035464	49036464	+	693.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053110)	promoter-TSS (NM_053110)	-554.0	NM_053110	93695.0	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	7.44	3.69	1.85	3.37	5.13	5.63	10.56	6.19	5.0
Merged-chr3-28543768-3	chr3	28543272	28544272	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026910, intron 7 of 32)	intron (NM_026910, intron 7 of 32)	123829.0	NR_130342	100628591.0		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	9.72	17.05	12.95	21.59	7.46	14.47	7.39	6.19	5.0
Merged-chr6-51550164-3	chr6	51549670	51550670	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	L1MB8|LINE|L1	4877.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	21.74	24.42	21.27	15.52	11.66	32.15	22.18	19.9	16.24
Merged-chr13-23524846-3	chr13	23524338	23525338	+	693.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6206.0	NM_153173	69386.0	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	6.29	5.53	3.7	3.37	1.87	1.61	7.39	2.65	7.49
Merged-chr8-123036219-3	chr8	123035735	123036735	+	693.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	6049.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	23.45	18.43	9.25	22.94	19.59	13.66	26.4	28.74	7.49
Merged-chr11-4536131-3	chr11	4535627	4536627	+	693.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028860, intron 1 of 17)	L1MB8|LINE|L1	58688.0	NM_028860	74302.0	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	86.38	101.37	40.7	73.54	84.44	46.62	51.75	59.69	49.96
Merged-chr1-105998539-2	chr1	105997960	105998960	+	693.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	8054.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	79.52	101.37	55.5	87.71	72.78	112.53	96.11	73.4	51.21
Merged-chr12-55230706-2	chr12	55230205	55231205	+	693.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001100109, intron 1 of 15).2	CpG	227.0	NM_001100110	100101806.0	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	36.61	24.42	37.0	28.34	40.12	61.09	41.19	30.95	27.48
Merged-chr18-67988831-2	chr18	67988318	67989318	+	693.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 1 of 5)	intron (NM_172631, intron 1 of 5)	55645.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.01	5.07	21.27	23.62	11.2	16.88	6.34	3.54	9.99
Merged-chr3-108416050-3	chr3	108415539	108416539	+	693.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-545.0	NM_001004177	53883.0	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	1.72	0.92	0.0	7.42	1.4	1.61	1.06	1.33	6.25
Merged-chr5-64759238-3	chr5	64758759	64759759	+	693.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44264.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	27.46	17.05	20.35	24.29	18.66	26.53	31.69	27.86	15.61
Merged-chr6-16978227-3	chr6	16977658	16978658	+	693.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79717.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	8.01	5.53	2.77	6.07	6.53	1.61	8.45	7.52	5.0
Merged-chr4-141503284-1	chr4	141502784	141503784	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	35313.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	6.86	6.91	5.55	18.22	12.6	9.65	14.79	11.94	12.49
Merged-chr10-77417250-1	chr10	77416750	77417750	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	1023.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	2.29	0.0	2.77	2.7	3.73	1.61	2.11	0.0	1.25
Merged-chrX-159677458-1	chrX	159676958	159677958	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	MLTR14|LTR|ERV1	-31143.0	NM_021389	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.15	5.99	3.7	10.12	8.4	4.82	2.11	5.75	3.75
Merged-chr17-65656954-1	chr17	65656454	65657454	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133685, intron 6 of 6)	intron (NM_133685, intron 6 of 6)	-14750.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	15.45	18.43	28.67	18.22	23.33	23.31	22.18	16.36	18.11
Merged-chr16-76762629-1	chr16	76762129	76763129	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_155453, intron 1 of 3)	intron (NR_155453, intron 1 of 3)	16463.0	NR_155453	102632814.0		NR_155453	ENSMUSG00000109333	Gm30790	Gm45028	predicted gene, 30790	ncRNA	117.27	106.9	54.57	128.2	96.57	65.11	257.71	244.52	75.57
Merged-chr6-22343375-2	chr6	22342882	22343882	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 1 of 9)	intron (NM_138587, intron 1 of 9)	12699.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	10.3	9.68	5.55	7.42	9.33	6.43	16.9	13.27	9.99
Merged-chr15-31649842-1	chr15	31649342	31650342	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	47726.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	6.29	5.07	4.62	5.4	9.8	8.84	6.34	6.63	0.0
Merged-chr18-47369955-1	chr18	47369455	47370455	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1085.0	NM_001311097	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	4.58	2.76	0.0	2.02	4.67	3.22	4.22	1.77	2.5
Merged-chr15-97519360-1	chr15	97518860	97519860	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186462.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	8.01	4.61	2.77	22.94	14.93	28.94	8.45	4.86	1.25
Merged-chr7-67243027-1	chr7	67242527	67243527	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	intron (NM_001291195, intron 8 of 10)	20411.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	115.55	203.21	135.97	158.56	137.15	139.86	120.41	180.4	78.69
Merged-chr3-151748714-2	chr3	151748240	151749240	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 2 of 7)	intron (NM_133871, intron 2 of 7)	1219.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	23.45	24.42	26.82	30.36	23.79	19.29	15.84	21.22	9.99
Merged-chr4-63508430-1	chr4	63507930	63508930	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12439.0	NM_001008791	73750.0	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	4.0	5.53	4.62	4.72	4.2	1.61	4.22	3.1	3.75
Merged-chr16-93027660-1	chr16	93027160	93028160	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-201586.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	31.46	25.8	16.65	33.74	16.79	4.02	20.07	18.57	14.99
Merged-chr15-76782890-1	chr15	76782390	76783390	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	35280.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	38.9	28.57	49.95	28.34	35.45	35.37	21.12	12.38	13.12
Merged-chr2-112392917-1	chr2	112392417	112393417	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	intron (NM_024254, intron 1 of 9)	13706.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	8.01	5.53	3.7	6.75	4.67	10.45	5.28	4.86	9.37
Merged-chr9-123504487-1	chr9	123503987	123504987	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013860, intron 2 of 7)	intron (NM_013860, intron 2 of 7)	-25266.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	1.72	3.69	0.0	0.67	2.33	3.22	1.06	2.65	4.37
Merged-chr7-35585202-1	chr7	35584702	35585702	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145840, exon 1 of 1)	exon (NM_145840, exon 1 of 1)	380.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	9.15	2.76	1.85	6.75	8.4	5.63	5.28	0.44	1.25
Merged-chr11-23048309-1	chr11	23047809	23048809	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34922.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	5.15	9.22	13.87	6.75	11.2	11.25	5.28	6.63	6.25
Merged-chr17-45570123-1	chr17	45569623	45570623	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008302, intron 6 of 10)	intron (NM_008302, intron 6 of 10)	3138.0	NM_008302	15516.0	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	13.16	11.98	14.8	15.52	6.53	11.25	14.79	14.59	16.86
Merged-chr2-5711717-1	chr2	5711217	5712217	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	B4A|SINE|B4	3045.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	17.73	32.72	17.57	30.36	27.52	31.35	31.69	26.97	13.74
Merged-chr17-56819757-1	chr17	56819257	56820257	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009056, intron 1 of 16)	intron (NM_009056, intron 1 of 16)	11251.0	NM_009056	19725.0	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	25.17	17.97	17.57	7.42	6.06	4.82	25.35	8.84	2.5
Merged-chr5-100644063-3	chr5	100643567	100644567	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30189.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	13.73	5.53	1.85	8.77	2.8	0.0	38.02	24.32	15.61
Merged-chr17-36015901-1	chr17	36015401	36016401	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4659.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	2.86	4.61	8.32	22.27	23.79	16.88	8.45	6.19	6.25
Merged-chr13-3775152-1	chr13	3774652	3775652	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	29166.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.0	6.45	10.17	3.37	4.67	3.22	0.0	3.54	2.5
Merged-chr15-96684400-1	chr15	96683900	96684900	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15328.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	18.31	9.22	11.1	12.82	9.33	8.84	17.96	9.29	8.12
Merged-chr15-91301548-2	chr15	91301033	91302033	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033633, intron 7 of 9)	B3|SINE|B2	-109526.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	3.43	2.76	1.85	4.05	2.33	3.22	4.22	5.31	2.5
Merged-chr19-42171273-1	chr19	42170773	42171773	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177319, intron 1 of 12)	intron (NM_177319, intron 1 of 12)	706.0	NM_001164531	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	86.95	83.86	60.12	71.52	88.17	51.44	58.09	67.21	28.1
Merged-chr12-110447515-1	chr12	110447015	110448015	+	693.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135001, intron 1 of 13)	CpG	336.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	50.91	35.94	36.07	33.74	24.26	43.4	57.03	32.72	30.6
Merged-chr16-32244331-1	chr16	32243831	32244831	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173439, intron 1 of 2)	intron (NM_173439, intron 1 of 2)	2694.0	NM_173439	268882.0	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	18.88	12.9	23.12	6.75	12.6	11.25	17.96	12.82	16.24
Merged-chrX-106171341-1	chrX	106170841	106171841	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15759.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	7.44	1.38	1.85	2.7	2.8	5.63	5.28	2.65	0.0
Merged-chr8-83723545-1	chr8	83723045	83724045	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_197982)	TTS (NM_197982)	439.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	12.59	5.53	14.8	5.4	5.6	3.22	5.28	7.07	8.12
Merged-chr15-84127073-2	chr15	84126570	84127570	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3895.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	5.15	6.45	7.4	7.42	6.06	19.29	9.51	9.29	20.61
Merged-chr15-6591623-1	chr15	6591123	6592123	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	11776.0	NM_011815	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	16.02	21.66	13.87	20.24	13.53	12.06	34.85	19.01	24.36
Merged-chr4-40978074-2	chr4	40977583	40978583	+	693.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290448, intron 2 of 15)	intron (NM_001290448, intron 2 of 15)	7140.0	NM_023739	74164.0	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	10.87	11.06	9.25	9.45	10.73	8.84	9.51	8.4	5.0
Merged-chr1-86216673-1	chr1	86216173	86217173	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027456, intron 19 of 20)	intron (NM_027456, intron 19 of 20)	61893.0	NM_001310702	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	7.44	10.14	3.7	14.84	13.06	6.43	8.45	2.65	0.0
Merged-chr4-136885537-1	chr4	136885037	136886037	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009777, intron 1 of 2)	intron (NM_009777, intron 1 of 2)	640.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	204.8	214.26	227.54	167.33	179.14	245.96	317.91	337.37	196.1
Merged-chr13-60666135-1	chr13	60665635	60666635	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	63924.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	12.01	26.73	12.95	13.49	16.33	45.82	15.84	4.86	19.36
Merged-chr11-29147312-1	chr11	29146812	29147812	+	693.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027869, exon 16 of 28)	exon (NM_027869, exon 16 of 28)	16561.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	2.86	4.61	3.7	50.6	30.79	41.8	110.9	76.94	67.45
Merged-chr15-6067590-1	chr15	6067090	6068090	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22886.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	2.29	4.15	1.85	6.75	7.93	1.61	5.28	8.84	1.25
Merged-chr10-21556575-1	chr10	21556075	21557075	+	693.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36570.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	4.58	3.69	12.02	4.72	4.2	6.43	11.62	8.84	9.99
Merged-chr12-99468199-3	chr12	99467710	99468710	+	692.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18136.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	17.16	4.61	3.7	11.47	8.4	0.8	5.28	6.63	6.25
Merged-chr7-55970541-4	chr7	55969966	55970966	+	692.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	B1_Mus1|SINE|Alu	7935.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	91.53	93.08	98.97	89.06	61.58	90.83	77.1	85.78	56.21
Merged-chr12-76490983-2	chr12	76490485	76491485	+	692.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	42227.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	6.29	2.76	22.2	10.8	2.8	6.43	6.34	6.19	6.25
Merged-chr18-62185796-3	chr18	62185334	62186334	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	5734.0	NM_001013754	225609.0	Mm.296917	NM_001013754	ENSMUSG00000054589	Gm9949	EG225609	predicted gene 9949	protein-coding	68.07	76.95	50.87	73.54	59.25	57.87	64.43	40.68	40.59
Merged-chr2-157129296-3	chr2	157128798	157129798	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001139520, intron 2 of 16)	intron (NM_001139520, intron 2 of 16)	5924.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	69.79	73.73	40.7	86.36	71.38	45.82	80.27	100.37	34.97
Merged-chr14-121928573-3	chr14	121928067	121929067	+	692.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-12793.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	99.54	119.8	80.47	74.89	71.38	68.32	47.53	53.5	31.85
Merged-chrX-76598619-2	chrX	76598129	76599129	+	692.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001201395, intron 1 of 1)	SYNREP_MM|Satellite|Satellite	4295.0	NM_001201395	74987.0	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	14.87	43.77	21.27	15.52	51.32	26.53	30.63	35.82	23.73
Merged-chr4-82622652-2	chr4	82622157	82623157	+	692.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	114668.0	NR_137202	102635783.0	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	2.29	6.91	4.62	6.07	4.67	3.22	17.96	10.17	9.99
Merged-chrX-61653256-2	chrX	61652774	61653774	+	692.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-56342.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	1.72	2.76	1.85	6.07	2.33	0.0	5.28	4.86	9.99
Merged-chr17-83633026-2	chr17	83632517	83633517	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1122.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	9.72	9.68	3.7	8.77	2.8	3.22	4.22	9.73	3.12
Merged-chr1-186549408-2	chr1	186548903	186549903	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131124, intron 1 of 2)	L1MB3|LINE|L1	9278.0	NR_131124	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	5.15	5.53	4.62	4.05	4.67	0.0	5.28	1.77	13.74
Merged-chr1-192745203-2	chr1	192744686	192745686	+	692.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	26033.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	49.2	39.17	11.1	16.19	11.2	3.22	33.8	27.41	9.99
Merged-chr18-60747177-4	chr18	60746691	60747691	+	692.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348101)	promoter-TSS (NM_001348101)	-445.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	77.23	89.39	68.45	91.76	72.78	101.28	111.96	115.41	41.84
Merged-chr14-70203544-1	chr14	70203044	70204044	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011366, intron 1 of 20)	intron (NM_011366, intron 1 of 20)	1079.0	NM_001271408	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.57	3.23	0.92	4.72	4.67	1.61	5.28	2.65	0.0
Merged-chr6-138140152-3	chr6	138139659	138140659	+	692.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019946)	promoter-TSS (NM_019946)	-368.0	NM_001361308	56615.0	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	26.31	52.07	23.12	29.69	51.78	31.35	21.12	13.27	10.62
Merged-chr2-70967853-1	chr2	70967353	70968353	+	692.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145524, intron 7 of 9)	B4A|SINE|B4	50521.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	77.8	93.54	77.7	125.5	83.04	98.87	105.62	126.02	86.18
Merged-chr17-48192688-1	chr17	48192188	48193188	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25431.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	7.44	1.84	11.1	6.75	3.27	8.04	12.67	5.75	2.5
Merged-chr13-103974171-1	chr13	103973671	103974671	+	692.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53585.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	4.58	5.53	1.85	2.7	4.2	4.82	4.22	1.77	1.25
Merged-chr10-4414647-1	chr10	4414147	4415147	+	692.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 7 of 13)	intron (NM_001358796, intron 7 of 13)	14519.0	NR_002891	433224.0	Mm.153111	NR_002891	ENSMUSG00000112693	Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.0	6.45	7.4	5.4	10.73	1.61	10.56	14.59	5.0
Merged-chr7-100503627-4	chr7	100503027	100504027	+	692.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153527, intron 7 of 7)	intron (NM_153527, intron 7 of 7)	10169.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	24.6	38.71	41.62	38.46	30.32	45.01	46.47	64.11	57.46
Merged-chr2-154712388-2	chr2	154711899	154712899	+	692.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55373.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	2.86	1.38	3.7	6.07	6.53	1.61	3.17	0.88	5.0
Merged-chr12-117469555-2	chr12	117468983	117469983	+	692.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-46996.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	8.01	2.76	3.7	5.4	4.67	4.82	6.34	6.63	6.25
Merged-chr8-4516321-3	chr8	4515823	4516823	+	692.655579	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026058, intron 2 of 10)	intron (NM_026058, intron 2 of 10)	22918.0	NM_026058	67260.0	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	6.29	4.61	1.85	2.7	1.87	0.0	2.11	3.54	1.87
Merged-chr10-94858873-3	chr10	94858371	94859371	+	692.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018797, intron 9 of 30)	intron (NM_018797, intron 9 of 30)	85707.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	6.29	4.15	3.7	2.02	4.2	7.23	6.34	1.77	3.75
Merged-chr12-52783187-1	chr12	52782687	52783687	+	692.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	83804.0	NM_198111	238161.0	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	1.72	2.76	1.85	2.02	5.6	3.22	2.11	3.1	2.5
Merged-chr15-6519634-1	chr15	6519134	6520134	+	692.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60213.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	26.31	14.75	18.5	22.94	16.79	24.92	12.67	11.05	16.24
Merged-chr8-13758524-2	chr8	13758008	13759008	+	692.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	852.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	38.33	26.26	29.6	24.29	38.72	28.13	30.63	33.6	21.86
Merged-chr12-8348248-3	chr12	8347766	8348766	+	692.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34833.0	NM_021429	58240.0	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	21.74	19.35	18.5	14.84	16.79	8.04	15.84	7.96	7.49
Merged-chr11-119079310-3	chr11	119078815	119079815	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007625, exon 5 of 5)	3' UTR (NM_007625, exon 5 of 5)	6922.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	25.17	13.82	28.67	27.66	20.99	32.96	27.46	17.24	9.37
Merged-chr17-65783393-2	chr17	65782892	65783892	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_104465)	promoter-TSS (NR_104465)	37.0	NR_104465	70351.0	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	153.88	105.98	133.19	172.05	79.31	109.32	179.55	76.05	91.81
Merged-chr11-60932927-2	chr11	60932416	60933416	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	859.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	105.83	166.34	139.67	77.59	81.64	107.71	76.05	87.99	43.72
Merged-chr4-3720545-1	chr4	3720045	3721045	+	692.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	5581.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	54.35	56.22	39.77	51.28	33.59	53.05	68.65	54.39	41.84
Merged-chr11-106032099-2	chr11	106031595	106032595	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037712, intron 12 of 12)	IAPEz-int|LTR|ERVK	-4777.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.57	0.0	0.0	3.37	0.47	0.0	13.73	19.01	9.99
Merged-chrX-42033306-1	chrX	42032806	42033806	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34530.0	NM_009688	11798.0	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	5.72	5.53	13.87	7.42	6.53	3.22	3.17	1.77	6.25
Merged-chr5-52760434-1	chr5	52759934	52760934	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028744, intron 7 of 9)	intron (NM_028744, intron 7 of 9)	-14975.0	NM_001309445	78796.0	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	11.44	16.59	14.8	15.52	22.86	16.08	17.96	3.98	3.75
Merged-chr14-121035517-1	chr14	121035017	121036017	+	692.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134082)	promoter-TSS (NM_134082)	-57.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	8.58	0.0	1.85	4.72	1.4	1.61	9.51	1.77	5.0
Merged-chr10-127194566-2	chr10	127194060	127195060	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045715)	promoter-TSS (NR_045715)	-689.0	NR_045715	100038591.0	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	-	RIKEN cDNA F420014N23 gene	ncRNA	14.87	13.36	11.1	14.17	12.6	14.47	6.34	3.98	1.25
Merged-chr11-119436653-1	chr11	119436153	119437153	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46181.0	NR_035453	100316690.0		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	4.58	4.61	6.47	4.05	4.2	3.22	9.51	2.21	8.74
Merged-chr9-48707654-2	chr9	48707165	48708165	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033324, intron 4 of 6)	intron (NM_001033324, intron 4 of 6)	-102542.0	NM_001311062	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	4.0	1.84	0.0	2.02	3.73	4.82	0.0	1.33	1.25
Merged-chr4-62405018-1	chr4	62404518	62405518	+	692.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 1 of 3)	RMER1B|Other|Other	3605.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	23.45	22.58	25.9	23.62	28.46	35.37	1.06	1.33	2.5
Merged-chr19-53467530-2	chr19	53467031	53468031	+	692.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2735.0	NR_028427	381232.0	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|Gm10758	myocardial infarction associated transcript 1	ncRNA	5.72	2.76	5.55	4.72	3.27	5.63	1.06	4.42	0.0
Merged-chr9-59541676-5	chr9	59541146	59542146	+	692.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	2106.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	121.28	148.37	106.37	124.82	118.03	90.83	181.66	162.72	102.42
Merged-chr1-105996246-2	chr1	105995742	105996742	+	692.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	5836.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	29.17	33.64	47.17	24.96	26.59	31.35	40.14	36.26	23.73
Merged-chr1-23920921-2	chr1	23920412	23921412	+	692.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	intron (NM_001357395, intron 1 of 10)	1469.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	9.15	12.44	0.0	6.07	9.33	6.43	24.29	16.36	14.36
Merged-chr15-79511694-3	chr15	79511190	79512190	+	692.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4718.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	9.72	2.76	12.95	4.72	1.87	2.41	4.22	3.1	5.62
Merged-chr11-20691180-2	chr11	20690681	20691681	+	692.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252503, intron 7 of 7)	intron (NM_001252503, intron 7 of 7)	50375.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	6.86	1.84	1.85	4.05	3.27	0.0	2.11	2.65	1.25
Merged-chr13-95324390-1	chr13	95323890	95324890	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028106)	promoter-TSS (NM_028106)	-435.0	NM_028106	72114.0	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	8.01	7.37	7.4	16.19	20.99	12.86	15.84	16.36	4.37
Merged-chr4-124703544-1	chr4	124703044	124704044	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010213, intron 1 of 5)	intron (NM_010213, intron 1 of 5)	2845.0	NM_010213	14201.0	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	13.16	16.59	20.35	41.83	29.39	37.78	14.79	7.96	14.99
Merged-chr17-24583835-1	chr17	24583335	24584335	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013630, intron 26 of 45)	Lx5c|LINE|L1	33885.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	9.15	13.82	15.72	21.59	8.4	13.66	17.96	15.03	17.49
Merged-chr7-132387750-3	chr7	132387262	132388262	+	692.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-70534.0	NM_029935	77590.0	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAc4S-6ST|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	5.72	3.23	3.7	10.8	4.67	4.82	12.67	0.88	3.75
Merged-chr3-85887626-1	chr3	85887126	85888126	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177130)	promoter-TSS (NM_177130)	-108.0	NM_177130	320302.0	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	8.01	2.3	4.62	6.07	4.67	1.61	1.06	0.0	6.87
Merged-chr18-9731098-1	chr18	9730598	9731598	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 2 of 9)	MIRc|SINE|MIR	23450.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	39.47	46.08	19.42	98.51	100.3	87.61	17.96	25.65	17.49
Merged-chr18-84858338-1	chr18	84857838	84858838	+	692.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	intron (NM_001348159, intron 1 of 5)	7000.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	9.72	11.06	3.7	15.52	8.4	11.25	7.39	4.86	9.37
Merged-chr13-48981252-3	chr13	48980721	48981721	+	692.288879	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13109.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	24.03	18.43	20.35	25.64	19.13	33.76	25.35	28.3	22.48
Merged-chr3-89321867-2	chr3	89321362	89322362	+	692.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	CpG	1017.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	3.43	0.46	1.85	2.02	0.93	0.0	0.0	1.77	6.87
Merged-chr1-86066930-2	chr1	86066408	86067408	+	692.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027357, intron 1 of 24)	intron (NM_027357, intron 1 of 24)	2289.0	NM_027357	70247.0	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	22.31	24.42	11.1	19.57	13.06	13.66	32.74	19.46	11.24
Merged-chr6-71804287-3	chr6	71803822	71804822	+	692.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178608, intron 6 of 6)	intron (NM_178608, intron 6 of 6)	19462.0	NM_025430	66223.0	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	2.86	1.38	0.0	2.7	2.8	0.0	2.11	2.21	0.0
Merged-chr5-139838657-2	chr5	139838164	139839164	+	692.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11770.0	NM_025604	66506.0	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	4.0	3.69	1.85	1.35	0.93	1.61	1.06	1.77	0.0
Merged-chr10-60081253-2	chr10	60080773	60081773	+	692.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026937, intron 9 of 10)	intron (NM_026937, intron 9 of 10)	-24984.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	7.44	11.98	5.55	18.22	13.53	17.68	6.34	5.75	8.74
Merged-chr11-80301598-2	chr11	80301093	80302093	+	692.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139228, intron 1 of 8)	CpG	681.0	NM_139228	246104.0	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid like 3	protein-coding	13.73	4.15	7.4	7.42	4.2	3.22	12.67	9.29	7.49
Merged-chr9-20493594-3	chr9	20493106	20494106	+	692.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001110309)	promoter-TSS (NM_001110309)	-860.0	NM_001110309	235028.0	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	69.22	104.14	63.82	48.58	61.11	77.97	102.45	113.19	56.21
Merged-chr9-110352501-3	chr9	110351993	110352993	+	692.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	19137.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	16.59	9.68	12.02	10.12	7.46	15.27	6.34	7.96	7.49
Merged-chr11-104331619-1	chr11	104331119	104332119	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010838, exon 10 of 10)	3' UTR (NM_010838, exon 10 of 10)	100183.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	3.43	1.84	12.02	2.02	0.93	8.04	4.22	0.88	3.75
Merged-chr11-17052854-1	chr11	17052354	17053354	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029861, intron 1 of 2)	intron (NM_029861, intron 1 of 2)	920.0	NM_029861	380686.0	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	3.43	4.61	5.55	6.07	5.6	6.43	2.11	3.1	1.87
Merged-chr2-84528935-3	chr2	84528424	84529424	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22051.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	92.67	89.85	72.15	90.41	47.58	65.11	83.44	71.19	42.47
Merged-chr19-61230708-2	chr19	61230206	61231206	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-2288.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	6.29	13.36	1.85	8.1	10.26	17.68	12.67	10.17	13.74
Merged-chr2-7653722-1	chr2	7653222	7654222	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-257524.0	NM_001110231	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.29	2.3	1.85	4.05	7.0	3.22	5.28	2.65	1.25
Merged-chr7-30090917-1	chr7	30090417	30091417	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_152814)	promoter-TSS (NM_152814)	-407.0	NM_152814	72556.0	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	23.45	31.33	23.12	39.13	25.19	50.64	39.08	64.56	34.97
Merged-chr10-60379788-3	chr10	60379294	60380294	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 33 of 68)	intron (NM_001252635, intron 33 of 68)	-19932.0	NM_001164374	100302688.0	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	13.16	5.53	1.85	14.17	8.86	12.06	5.28	0.88	7.49
Merged-chr13-34076076-2	chr13	34075568	34076568	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009450, intron 3 of 3)	intron (NM_009450, intron 3 of 3)	1940.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	19.45	7.37	9.25	6.07	3.73	5.63	2.11	7.96	8.12
Merged-chr13-107646406-1	chr13	107645906	107646906	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40991.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	8.58	4.15	1.85	5.4	4.67	1.61	4.22	3.98	0.0
Merged-chr14-17812637-1	chr14	17812137	17813137	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	L1M5|LINE|L1	151677.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	3.43	1.84	9.25	3.37	7.93	1.61	5.28	4.42	2.5
Merged-chr15-97831040-2	chr15	97830540	97831540	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204276, intron 1 of 25)	CpG	727.0	NM_019572	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	38.33	16.59	15.72	23.62	13.06	30.54	13.73	3.1	1.25
Merged-chr15-7089022-1	chr15	7088522	7089522	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40550.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	8.01	4.61	1.85	2.7	3.73	1.61	8.45	1.77	5.62
Merged-chr10-123187345-1	chr10	123186845	123187845	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301628, intron 1 of 20)	intron (NM_001301628, intron 1 of 20)	9674.0	NM_027604	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	9.72	6.91	11.1	6.75	5.6	6.43	8.45	4.42	23.73
Merged-chr16-95605499-1	chr16	95604999	95605999	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18906.0	NM_001302152	13876.0	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	ETS transcription factor	protein-coding	2.86	0.92	0.0	4.05	3.27	0.0	1.06	3.54	5.0
Merged-chr9-110710821-1	chr9	110710321	110711321	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 5 of 6)	intron (NM_028312, intron 5 of 6)	31789.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	58.92	82.02	62.9	60.72	53.65	65.91	120.41	122.04	73.07
Merged-chr8-13337417-1	chr8	13336917	13337917	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1334.0	NM_001291765	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	3.43	2.3	6.47	6.75	2.33	3.22	2.11	1.77	2.5
Merged-chr11-44395835-1	chr11	44395335	44396335	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4228.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.15	8.75	1.85	8.77	8.4	12.06	9.51	5.31	8.74
Merged-chr5-122689083-1	chr5	122688583	122689583	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038845, intron 12 of 12)	intron (NM_001038845, intron 12 of 12)	6486.0	NR_106195	102465902.0		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	28.6	29.49	12.95	43.18	32.66	26.53	36.97	37.14	16.24
Merged-chr17-46555498-1	chr17	46554998	46555998	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020493, exon 1 of 7)	exon (NM_020493, exon 1 of 7)	664.0	NM_020493	20807.0	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	116.7	127.18	102.67	101.21	55.51	77.16	92.94	68.09	85.56
Merged-chr11-108032786-1	chr11	108032286	108033286	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	35938.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	1.72	2.3	2.77	3.37	6.06	5.63	8.45	2.65	3.75
Merged-chr3-79568811-1	chr3	79568311	79569311	+	692.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152118, exon 1 of 2)	non-coding (NR_152118, exon 1 of 2)	619.0	NR_152118	75879.0	Mm.410800	NR_152118		4930589L23Rik	-	RIKEN cDNA 4930589L23 gene	ncRNA	75.51	77.41	61.05	80.29	79.77	65.91	107.73	114.52	63.7
Merged-chr11-73109293-1	chr11	73108793	73109793	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	18698.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	9.15	3.23	0.92	14.84	4.67	15.27	4.22	1.77	9.99
Merged-chr7-16005168-2	chr7	16004659	16005659	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5664.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	10.87	9.22	25.9	12.14	11.2	14.47	16.9	9.73	9.99
Merged-chr11-86613175-1	chr11	86612675	86613675	+	692.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 7 of 11)	B3|SINE|B2	-29017.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	57.21	53.91	49.95	58.7	70.44	57.07	79.21	81.36	51.21
Merged-chr1-135269349-3	chr1	135268838	135269838	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159624, intron 4 of 9)	PB1D10|SINE|Alu	-10866.0	NM_007921	13710.0	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	13.73	15.67	8.32	16.87	11.2	12.86	22.18	26.09	19.36
Merged-chr4-12035097-1	chr4	12034597	12035597	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52860.0	NM_177861	329795.0	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	5.15	3.69	4.62	4.72	2.8	0.0	2.11	2.21	3.75
Merged-chr8-68881575-1	chr8	68881075	68882075	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008509, intron 1 of 9)	intron (NM_008509, intron 1 of 9)	1020.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	31.46	35.02	49.02	41.83	27.99	44.21	65.48	76.94	38.72
Merged-chr10-120846991-1	chr10	120846491	120847491	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	LTR41|LTR|ERVL	-10638.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	7.44	5.53	1.85	8.1	5.13	8.04	4.22	2.65	7.49
Merged-chr2-167467557-1	chr2	167467057	167468057	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304542, intron 10 of 15)	intron (NM_001304542, intron 10 of 15)	-25088.0	NM_030743	81018.0	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	18.31	9.68	13.87	31.04	12.13	19.29	13.73	11.5	5.62
Merged-chr2-132903708-1	chr2	132903208	132904208	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198029)	TTS (NM_198029)	-22846.0	NM_177303	320974.0	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	1.72	2.76	0.0	3.37	1.4	0.0	2.11	3.1	1.25
Merged-chr8-35725879-2	chr8	35725382	35726382	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100677.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.58	2.76	8.32	6.07	4.2	4.82	6.34	3.98	1.87
Merged-chr9-94614136-3	chr9	94613745	94614745	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-55647.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	9.15	4.15	4.62	8.77	4.2	8.04	8.45	2.21	2.5
Merged-chr16-57338257-1	chr16	57337757	57338757	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025599, intron 1 of 9)	intron (NM_025599, intron 1 of 9)	-15020.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	48.62	67.27	52.72	39.13	29.39	32.96	38.02	42.45	36.85
Merged-chr1-54684568-1	chr1	54684068	54685068	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-126884.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	7.44	5.53	2.77	8.1	6.53	0.0	6.34	3.98	11.24
Merged-chrX-167201553-1	chrX	167201053	167202053	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7665.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	24.03	15.21	18.5	18.89	13.53	31.35	27.46	27.41	25.61
Merged-chrX-104200049-1	chrX	104199549	104200549	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077354, intron 1 of 4)	CpG	1068.0	NM_001077354	245555.0	Mm.381907	NM_001077354	ENSMUSG00000046449	Nexmif	A230051P11|C77370|C77386|KIDLIA|Xpn|mKIAA2022	neurite extension and migration factor	protein-coding	1.72	0.0	0.0	1.35	0.0	0.0	1.06	0.0	0.0
Merged-chr14-63446106-1	chr14	63445606	63446606	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177628, intron 2 of 3)	intron (NM_177628, intron 2 of 3)	9712.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	13.73	24.42	19.42	19.57	19.59	20.9	20.07	24.76	15.61
Merged-chr1-95315735-1	chr1	95315235	95316235	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026321, intron 1 of 2)	MER113|DNA|hAT-Charlie	2107.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	38.33	85.25	49.02	51.28	48.05	29.74	43.3	45.1	29.35
Merged-chr6-54019513-1	chr6	54019013	54020013	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20419.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	9.72	5.53	9.25	9.45	6.53	3.22	23.24	19.46	16.24
Merged-chr7-67234930-2	chr7	67234442	67235442	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291191, exon 11 of 11)	exon (NM_001291191, exon 11 of 11)	12326.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	8.01	5.07	9.25	10.12	4.67	10.45	11.62	7.96	11.24
Merged-chr4-99122582-1	chr4	99122082	99123082	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1667.0	NM_026082	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	8.01	6.45	1.85	6.07	3.73	13.66	8.45	5.75	13.74
Merged-chr2-128948366-3	chr2	128947880	128948880	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4360.0	NM_020594	57432.0	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	4.58	2.76	10.17	1.35	2.8	3.22	3.17	3.98	3.75
Merged-chr9-59282616-2	chr9	59282116	59283116	+	692.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8956.0	NM_001359282	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	4.0	0.46	2.77	5.4	2.33	0.0	5.28	1.77	2.5
Merged-chr11-102438455-2	chr11	102437949	102438949	+	692.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199200, exon 8 of 8)	exon (NM_199200, exon 8 of 8)	8127.0	NM_008175	14824.0	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	6.86	2.76	0.0	9.45	7.46	4.82	7.39	5.75	5.0
Merged-chr11-54975782-2	chr11	54975315	54976315	+	691.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12875.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	11.44	10.6	11.1	8.1	7.0	16.88	4.22	1.77	3.75
Merged-chr13-31347311-3	chr13	31346808	31347808	+	691.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-106222.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	6.86	4.61	1.85	2.02	4.67	1.61	3.17	4.42	0.0
Merged-chr15-27613005-3	chr15	27612511	27613511	+	691.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 4 of 6)	intron (NM_001013792, intron 4 of 6)	17682.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	9.72	3.69	3.7	10.8	5.13	5.63	3.17	1.77	6.87
Merged-chr17-74508821-2	chr17	74508312	74509312	+	691.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	19319.0	NM_026417	67864.0	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	2.29	3.23	2.77	9.45	2.8	4.82	4.22	2.65	5.0
Merged-chr5-104032629-2	chr5	104032131	104033131	+	691.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10835.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	22.31	16.13	2.77	16.87	11.66	1.61	31.69	15.92	10.62
Merged-chr4-95156955-2	chr4	95156459	95157459	+	691.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104737.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.58	5.53	0.0	8.77	8.4	4.82	7.39	6.19	3.75
Merged-chr9-45278286-2	chr9	45277833	45278833	+	691.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9184.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	33.75	46.54	31.45	51.95	28.46	33.76	49.64	51.29	26.85
Merged-chr3-65952125-3	chr3	65951646	65952646	+	691.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019937, intron 3 of 10)	intron (NM_019937, intron 3 of 10)	6103.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	36.61	51.61	46.25	37.11	21.46	55.46	46.47	46.87	49.34
Merged-chr6-8510262-2	chr6	8509777	8510777	+	691.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133236, exon 1 of 8)	exon (NM_133236, exon 1 of 8)	677.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	77.23	27.19	35.15	80.29	28.92	49.83	52.81	29.18	31.23
Merged-chr3-87562571-3	chr3	87562073	87563073	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36995.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	7.44	5.99	11.1	16.87	12.13	5.63	8.45	9.29	7.49
Merged-chr13-34204472-3	chr13	34203967	34204967	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 4 of 10)	MIR|SINE|MIR	41503.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	10.87	6.45	5.55	6.75	6.06	10.45	10.56	7.96	5.62
Merged-chr7-101541302-3	chr7	101540781	101541781	+	691.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14521.0	NM_007490	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	122.99	97.23	56.42	139.67	114.76	69.93	27.46	38.03	20.61
Merged-chr7-98338474-2	chr7	98337996	98338996	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17288.0	NM_001360615	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	109.26	76.95	74.92	84.34	55.51	69.13	54.92	85.34	52.46
Merged-chr7-140141517-3	chr7	140141026	140142026	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199301, intron 3 of 10)	intron (NM_199301, intron 3 of 10)	3962.0	NM_199301	212508.0	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	2.29	4.61	0.92	2.7	3.73	1.61	4.22	1.77	2.5
Merged-chr16-85286543-2	chr16	85286104	85287104	+	691.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112897.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	8.01	15.67	11.1	1.35	0.0	1.61	9.51	14.15	16.86
Merged-chr12-31944043-2	chr12	31943535	31944535	+	691.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	intron (NM_177993, intron 1 of 8)	6210.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	12.59	13.82	10.17	15.52	7.0	12.86	17.96	18.13	19.36
Merged-chr12-111843663-3	chr12	111843159	111844159	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011625, exon 7 of 17)	exon (NM_011625, exon 7 of 17)	29489.0	NM_026752	68520.0	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	28.03	56.22	35.15	48.58	41.99	71.54	64.43	75.17	56.83
Merged-chr16-49859674-3	chr16	49859188	49860188	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	4034.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	77.8	88.93	66.6	82.32	69.04	114.94	90.83	92.86	35.6
Merged-chrX-42540861-3	chrX	42540375	42541375	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011855, intron 29 of 32)	intron (NM_011855, intron 29 of 32)	35553.0	NM_001313691	20400.0	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	5.15	11.06	0.0	1.35	9.33	0.0	6.34	5.31	0.0
Merged-chr11-99041239-3	chr11	99040697	99041697	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010517)	promoter-TSS (NM_010517)	-47.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	32.61	28.11	20.35	20.92	11.2	10.45	9.51	7.96	12.49
Merged-chr11-58917099-1	chr11	58916599	58917599	+	691.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138678)	promoter-TSS (NM_138678)	-958.0	NM_138678	192194.0	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	5.15	1.38	0.92	2.7	1.87	4.82	8.45	0.0	0.0
Merged-chr6-129399313-1	chr6	129398813	129399813	+	691.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001204253, intron 1 of 3)	RLTR21|LTR|ERVK	2016.0	NM_001204239	56760.0	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	272.3	317.02	148.92	275.96	229.06	186.48	339.04	415.64	155.51
Merged-chr12-111365062-1	chr12	111364562	111365562	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	L1MB8|LINE|L1	12656.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	34.9	48.38	73.07	21.59	24.26	20.9	49.64	41.12	20.61
Merged-chr3-20028472-1	chr3	20027972	20028972	+	691.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 4 of 16)	ID_B1|SINE|B4	6838.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	78.37	103.22	76.77	51.95	62.98	87.61	70.76	82.24	76.19
Merged-chr10-5806630-3	chr10	5806151	5807151	+	691.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1186.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	50.91	71.42	49.02	73.54	60.18	86.01	68.65	72.07	45.59
Merged-chr13-44536658-2	chr13	44536167	44537167	+	691.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96940.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	12.01	4.15	3.7	10.12	2.8	7.23	7.39	1.33	1.25
Merged-chr17-83078599-2	chr17	83078123	83079123	+	691.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045094)	promoter-TSS (NR_045094)	-398.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	7.44	2.76	1.85	16.87	6.53	6.43	11.62	2.21	2.5
Merged-chr7-73539317-1	chr7	73538817	73539817	+	691.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_037569)	TTS (NR_037569)	2429.0	NM_001081345	244059.0	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	221.96	331.3	101.74	185.55	172.14	67.52	184.83	214.89	81.81
Merged-chrX-103443963-2	chrX	103443454	103444454	+	691.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002844, intron 1 of 3)	intron (NR_002844, intron 1 of 3)	12437.0	NR_002844	22097.0	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	5.72	2.76	1.85	6.75	4.2	12.86	1.06	0.88	3.75
Merged-chr18-61126381-3	chr18	61125857	61126857	+	691.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037859, intron 15 of 21)	intron (NM_001037859, intron 15 of 21)	8889.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	21.17	19.81	20.35	31.71	16.79	34.56	30.63	22.11	33.1
Merged-chr18-6470778-1	chr18	6470278	6471278	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007935, intron 1 of 13)	intron (NM_007935, intron 1 of 13)	19868.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	17.16	35.48	24.05	45.21	20.53	34.56	33.8	21.67	32.48
Merged-chr15-95885203-1	chr15	95884703	95885703	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 2 of 19)	intron (NM_175344, intron 2 of 19)	-55131.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	13.73	12.44	16.65	12.82	9.33	21.7	25.35	18.13	4.37
Merged-chr9-121995968-2	chr9	121995461	121996461	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153540)	promoter-TSS (NM_153540)	65.0	NM_001289559	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	7.44	6.45	0.0	7.42	2.33	0.0	3.17	1.77	1.25
Merged-chr3-130690957-2	chr3	130690442	130691442	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	18502.0	NM_025509	66357.0	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	6.86	5.53	5.55	12.82	8.4	8.84	12.67	16.8	8.12
Merged-chr2-84714294-2	chr2	84713778	84714778	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144887, intron 1 of 11)	intron (NM_144887, intron 1 of 11)	886.0	NM_144887	228136.0	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	70.36	89.85	70.3	68.82	49.92	110.92	80.27	79.15	56.83
Merged-chr4-156237187-1	chr4	156236687	156237687	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021303, intron 2 of 18)	CpG-10794	1177.0	NM_021303	57741.0	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	7.44	5.99	6.47	9.45	4.2	6.43	9.51	4.86	1.87
Merged-chr3-58556850-1	chr3	58556350	58557350	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001005509, intron 13 of 13)	intron (NM_001005509, intron 13 of 13)	-19786.0	NM_001040396	69227.0	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	38.9	52.99	47.17	3.37	0.47	4.82	45.42	57.92	36.22
Merged-chr6-53288044-1	chr6	53287544	53288544	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 1 of 10)	CpG	741.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	22.88	17.51	3.7	30.36	18.66	4.82	11.62	7.52	0.0
Merged-chr2-160336606-3	chr2	160336183	160337183	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9189.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	53.77	50.23	74.0	47.9	27.99	61.09	73.93	71.19	29.98
Merged-chr10-36892497-2	chr10	36891983	36892983	+	691.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-82061.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	4.0	7.37	9.25	4.05	12.6	14.47	2.11	5.75	8.74
Merged-chr1-89939664-1	chr1	89939164	89940164	+	691.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8488.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	5.15	3.23	7.4	4.05	7.46	4.82	2.11	2.65	3.12
Merged-chr9-37146755-3	chr9	37146266	37147266	+	691.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 1 of 12)	CpG	556.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	9.15	2.76	5.55	4.05	1.87	3.22	3.17	2.21	0.0
Merged-chr4-86555236-3	chr4	86554732	86555732	+	691.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	3071.0	NM_001081096	75811.0	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.58	2.3	3.7	1.35	0.47	5.63	1.06	0.88	5.0
Merged-chr7-15976106-3	chr7	15975614	15976614	+	691.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081418, intron 10 of 13)	intron (NM_001081418, intron 10 of 13)	-8579.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	5.15	2.3	5.55	4.05	1.4	8.04	7.39	1.33	5.62
Merged-chr13-9011801-2	chr13	9011301	9012301	+	691.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15789.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.43	4.15	0.92	1.35	0.93	7.23	5.28	0.0	2.5
Merged-chr6-87998081-3	chr6	87997580	87998580	+	691.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16397.0	NR_026990	434064.0	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	9.15	7.83	0.0	6.75	1.4	3.22	7.39	0.88	6.87
Merged-chr11-120660778-1	chr11	120660278	120661278	+	691.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175263)	promoter-TSS (NM_175263)	59.0	NM_175263	77583.0	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum palmitoleoyl-protein carboxylesterase	protein-coding	11.44	0.92	7.4	8.77	2.8	5.63	6.34	0.44	0.0
Merged-chr17-83808215-3	chr17	83807727	83808727	+	691.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054082, intron 16 of 16)	intron (NM_054082, intron 16 of 16)	38563.0	NM_025325	107766.0	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	5.15	3.69	3.7	4.05	4.2	3.22	1.06	3.1	5.0
Merged-chr4-9246554-2	chr4	9246055	9247055	+	691.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12A|LTR|ERVK	-22738.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	13.73	11.98	18.5	10.12	9.8	20.9	14.79	6.63	27.48
Merged-chr1-55023857-2	chr1	55023356	55024356	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031179, intron 1 of 24)	(GGAA)n|Simple_repeat|Simple_repeat	3622.0	NM_031179	81898.0	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	16.02	23.5	20.35	22.94	17.26	27.33	13.73	20.78	21.86
Merged-chr11-53184905-2	chr11	53184411	53185411	+	691.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177059, intron 15 of 15)	intron (NM_177059, intron 15 of 15)	-64855.0	NR_046047	790909.0	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	-	predicted gene 11186	ncRNA	0.57	2.3	1.85	3.37	2.8	1.61	3.17	0.88	3.75
Merged-chr2-152763613-2	chr2	152763144	152764144	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053091, intron 4 of 4)	B1_Mm|SINE|Alu	9471.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	0.57	0.92	1.85	4.05	3.73	2.41	4.22	2.65	2.5
Merged-chr4-71307663-2	chr4	71307160	71308160	+	691.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-772732.0	NM_172694	230316.0	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	4.58	3.23	0.0	2.7	4.67	5.63	8.45	3.98	6.87
Merged-chr14-122109100-3	chr14	122108600	122109600	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	2018.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	42.33	45.16	45.32	26.99	40.12	31.35	41.19	44.22	42.47
Merged-chr14-75006097-3	chr14	75005575	75006575	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 3 of 3)	intron (NR_030568, intron 3 of 3)	-9952.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	8.01	4.61	4.62	13.49	14.0	8.04	8.45	7.52	3.75
Merged-chr5-107725552-1	chr5	107725052	107726052	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267621, intron 1 of 6)	CpG	253.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	5.72	3.69	3.7	4.72	4.2	3.22	11.62	4.42	2.5
Merged-chr12-52390470-3	chr12	52389957	52390957	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	90152.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	7.44	6.91	5.55	7.42	11.2	4.82	10.56	3.98	12.49
Merged-chr18-43374761-1	chr18	43374261	43375261	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291455, intron 1 of 13)	LTR33|LTR|ERVL	-1489.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	1.14	2.3	1.85	5.4	2.8	2.41	2.11	2.21	4.37
Merged-chr1-43264631-3	chr1	43264120	43265120	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67859.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	4.0	4.15	3.7	6.07	1.87	1.61	4.22	1.77	0.0
Merged-chr5-134540155-3	chr5	134539668	134540668	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	12266.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	12.59	13.36	15.72	15.52	6.06	6.43	10.56	2.21	5.0
Merged-chr2-128717562-1	chr2	128717062	128718062	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	18647.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	39.47	59.44	49.95	40.48	46.65	98.06	73.93	45.1	42.47
Merged-chr4-43420536-1	chr4	43420036	43421036	+	691.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037709, intron 2 of 11)	intron (NM_001037709, intron 2 of 11)	8598.0	NM_177377	329831.0	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	122.42	120.73	91.57	122.12	77.44	63.5	61.26	67.21	42.47
Merged-chr8-24923614-1	chr8	24923114	24924114	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153397, intron 3 of 21)	intron (NM_153397, intron 3 of 21)	25190.0	NM_001293693	353188.0	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	4.58	4.61	1.85	5.4	2.8	4.82	4.22	1.77	5.0
Merged-chr6-108733716-1	chr6	108733216	108734216	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49343.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.29	3.69	9.25	6.07	2.8	4.82	5.28	4.42	1.25
Merged-chr5-43384830-1	chr5	43384330	43385330	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130739.0	NM_001135172	109323.0	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	4.0	0.92	3.7	2.7	2.8	4.82	3.17	2.21	5.0
Merged-chr3-95140712-3	chr3	95140224	95141224	+	691.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027206, intron 1 of 1)	intron (NM_027206, intron 1 of 1)	-1538.0	NR_106175	102465890.0		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	36.61	50.69	40.7	45.21	59.25	69.13	105.62	108.77	78.69
Merged-chr4-156255690-1	chr4	156255190	156256190	+	691.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110516)	promoter-TSS (NM_001110516)	-348.0	NM_001110516	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	9.15	4.15	0.0	14.84	7.46	0.8	6.34	3.54	0.0
Merged-chr10-10471305-2	chr10	10470810	10471810	+	691.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	intron (NM_001127353, intron 1 of 36)	1004.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	74.94	110.59	67.52	69.5	65.31	66.71	118.29	148.13	94.3
Merged-chrX-36051975-2	chrX	36051474	36052474	+	691.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 44 of 52)	intron (NM_001009947, intron 44 of 52)	-60134.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	9.72	10.6	3.7	12.82	10.26	8.04	4.22	6.19	3.75
Merged-chr2-29827770-2	chr2	29827274	29828274	+	691.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026615, intron 1 of 4)	CpG	385.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	126.42	110.59	85.1	74.89	52.25	124.59	116.18	91.09	69.95
Merged-chr13-21831569-2	chr13	21831104	21832104	+	691.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175657).2	TTS (NM_175657).2	554.0	NM_175657	319161.0	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	17.73	5.53	7.4	16.19	3.27	14.47	19.01	12.82	16.24
Merged-chr12-99084373-3	chr12	99083887	99084887	+	691.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78421.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	2.86	0.0	1.85	5.4	2.33	1.61	3.17	0.0	5.0
Merged-chr5-146770367-3	chr5	146769872	146770872	+	691.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	24584.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	26.89	28.11	20.35	19.57	20.53	39.39	52.81	42.01	30.6
Merged-chr5-32734105-2	chr5	32733616	32734616	+	691.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C2_MM|LTR|ERVK	12226.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	8.58	10.14	9.25	11.47	11.2	12.86	0.0	1.77	3.75
Merged-chr2-5597068-2	chr2	5596573	5597573	+	691.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	78973.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	8.58	1.84	5.55	29.69	12.6	25.72	7.39	5.75	1.25
Merged-chr4-130663815-3	chr4	130663379	130664379	+	691.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356566, intron 1 of 17)	CpG	522.0	NM_001356564	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	105.83	103.68	89.72	98.51	93.77	82.79	146.81	76.49	68.7
Merged-chr4-8979156-2	chr4	8978664	8979664	+	691.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	227840.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	4.58	3.69	7.4	5.4	5.6	4.02	6.34	3.54	1.25
Merged-chr6-128805331-3	chr6	128804852	128805852	+	691.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-16711.0	NM_008527	17059.0	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Klrb1b|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1b|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	5.15	3.69	1.85	10.8	7.0	4.82	3.17	2.65	1.87
Merged-chr15-38452841-1	chr15	38452341	38453341	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37706.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.72	2.3	7.4	12.14	7.0	7.23	5.28	6.63	6.25
Merged-chr14-63130213-1	chr14	63129713	63130713	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	intron (NM_007798, intron 1 of 9)	7751.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	416.46	491.2	294.14	448.69	550.48	359.29	420.36	554.48	259.18
Merged-chr11-79686935-1	chr11	79686435	79687435	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175543, intron 10 of 14)	intron (NM_175543, intron 10 of 14)	-11849.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	8.01	0.92	3.7	0.67	1.4	2.41	2.11	0.0	3.75
Merged-chr11-53628116-1	chr11	53627616	53628616	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6586.0	NM_008355	16163.0	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	12.01	1.84	5.55	9.45	0.93	7.23	3.17	0.88	1.25
Merged-chr12-98317607-1	chr12	98317107	98318107	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48972.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	9.15	7.37	7.4	11.47	5.6	12.86	4.22	3.54	2.5
Merged-chr17-66110867-1	chr17	66110367	66111367	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037757)	promoter-TSS (NM_001037757)	-679.0	NM_026833	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	16.02	16.59	16.65	22.27	25.19	20.9	29.57	13.71	13.74
Merged-chr1-80408729-3	chr1	80408224	80409224	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37208.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	1.72	1.84	1.85	2.7	3.73	3.22	4.22	4.86	5.0
Merged-chr4-137676300-1	chr4	137675800	137676800	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138591, intron 1 of 23)	intron (NR_138591, intron 1 of 23)	-5327.0	NM_001081155	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	4.58	1.84	0.0	4.05	0.47	0.0	1.06	3.54	2.5
Merged-chr13-101694519-1	chr13	101694019	101695019	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	CpG	-1889.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	17.73	11.06	14.8	17.54	9.8	10.45	16.9	13.71	5.62
Merged-chr3-89887800-1	chr3	89887300	89888300	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010559, intron 3 of 9)	intron (NM_010559, intron 3 of 9)	25396.0	NM_001310676	16194.0	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	8.58	8.75	6.47	12.82	9.33	8.84	6.34	6.19	6.25
Merged-chr1-166731038-1	chr1	166730538	166731538	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49193.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	4.0	1.84	1.85	7.42	1.87	5.63	4.22	6.63	10.62
Merged-chr9-3000980-1	chr9	3000480	3001480	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	37763.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	62.35	279.7	458.78	60.72	326.09	492.72	153.15	154.76	542.09
Merged-chr2-32776298-1	chr2	32775798	32776798	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290567)	promoter-TSS (NM_001290567)	477.0	NM_178595	329384.0	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	29.75	17.97	4.62	26.31	9.33	10.45	12.67	7.52	8.74
Merged-chr7-84548683-1	chr7	84548183	84549183	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	19729.0	NR_045098	100039239.0	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	2.86	4.61	9.25	4.72	2.33	3.22	4.22	0.0	6.25
Merged-chr11-77361211-2	chr11	77360729	77361729	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	CT-rich|Low_complexity|Low_complexity	12949.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	22.31	31.33	26.82	37.11	31.72	41.8	40.14	32.72	22.48
Merged-chr11-16525094-2	chr11	16524595	16525595	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16611.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	6.29	5.07	1.85	2.02	8.4	3.22	2.11	0.44	1.25
Merged-chr17-24849330-1	chr17	24848830	24849830	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_023480, exon 1 of 1)	3' UTR (NM_023480, exon 1 of 1)	972.0	NM_023480	68636.0	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	126.42	95.84	110.07	116.73	124.09	118.16	88.72	121.15	60.58
Merged-chr19-45149958-1	chr19	45149458	45150458	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021901)	promoter-TSS (NM_021901)	-757.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	5.15	4.15	3.7	2.02	4.67	3.22	8.45	8.4	6.87
Merged-chr15-53196012-1	chr15	53195512	53196512	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	150171.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	28.03	25.8	9.25	24.96	12.6	13.66	5.28	4.42	10.62
Merged-chr2-128762727-1	chr2	128762227	128763227	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	MTD|LTR|ERVL-MaLR	-55576.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	20.02	23.96	23.12	14.17	18.66	15.27	11.62	15.92	28.1
Merged-chr1-152692782-1	chr1	152692282	152693282	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346117, intron 1 of 18)	MTD|LTR|ERVL-MaLR	-57769.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	14.3	16.13	7.4	21.59	14.93	11.25	21.12	13.27	13.74
Merged-chr3-94838927-1	chr3	94838427	94839427	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	1360.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	74.37	136.85	110.99	72.19	104.03	122.18	107.73	162.28	94.93
Merged-chr10-80152378-1	chr10	80151878	80152878	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347117, intron 4 of 7)	intron (NM_001347117, intron 4 of 7)	2696.0	NM_001305799	59090.0	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	74.94	50.69	41.62	55.33	45.72	62.7	82.38	63.23	44.34
Merged-chr1-134556396-2	chr1	134555894	134556894	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3784.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	14.87	8.75	6.47	12.14	8.4	5.63	11.62	11.94	13.74
Merged-chr10-36978570-1	chr10	36978070	36979070	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008229, intron 1 of 13)	RLTR31B2|LTR|ERVK	4026.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	10.87	11.52	0.0	2.02	2.33	3.22	7.39	5.75	5.62
Merged-chr17-36129563-1	chr17	36129063	36130063	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177467)	promoter-TSS (NM_001177467)	-138.0	NM_001177467	630294.0	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	1.14	0.0	0.0	14.84	1.87	7.23	1.06	1.33	7.49
Merged-chr6-99028047-2	chr6	99027528	99028528	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	270.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	36.04	14.28	24.05	12.14	9.33	8.04	20.07	3.98	13.12
Merged-chr1-88495458-1	chr1	88494958	88495958	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	14608.0	NM_008132	14659.0	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	2.29	3.23	4.62	3.37	5.6	4.82	11.62	8.84	5.0
Merged-chr11-50074092-1	chr11	50073592	50074592	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290750, intron 3 of 7)	L1MDa|LINE|L1	4390.0	NR_029769	723845.0		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	9.15	8.75	18.5	15.52	7.93	6.43	5.28	6.19	9.99
Merged-chr17-5758626-1	chr17	5758126	5759126	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40031.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	5.15	3.23	4.62	6.07	6.53	0.0	10.56	5.31	7.49
Merged-chrX-167230040-1	chrX	167229540	167230540	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-20822.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	85.81	84.78	57.35	64.77	48.52	68.32	73.93	106.56	55.58
Merged-chr2-58035785-1	chr2	58035285	58036285	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172855, intron 9 of 9)	intron (NM_172855, intron 9 of 9)	16967.0	NM_029972	77767.0	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	9.72	5.53	3.7	8.1	5.13	3.22	7.39	3.54	2.5
Merged-chr13-9061491-1	chr13	9060991	9061991	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32390.0	NM_001311117	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	1.72	2.76	3.7	3.37	1.87	0.0	3.17	0.88	3.75
Merged-chr5-31288342-1	chr5	31287842	31288842	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	2772.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	5.15	5.53	1.85	10.12	7.0	11.25	6.34	2.21	3.75
Merged-chr17-53579003-2	chr17	53578494	53579494	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	intron (NR_151733, intron 1 of 16)	-5132.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	8.58	2.76	6.47	12.14	1.4	3.22	8.45	9.29	1.87
Merged-chr11-60244634-1	chr11	60244134	60245134	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359810, intron 10 of 12)	MTE2a|LTR|ERVL-MaLR	-22053.0	NM_001358315	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	14.87	6.45	5.55	3.37	1.87	4.82	2.11	3.54	2.5
Merged-chr13-34303605-3	chr13	34303103	34304103	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41579.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	24.03	23.04	14.8	27.66	17.26	26.53	28.52	12.38	9.37
Merged-chr3-65971817-1	chr3	65971317	65972317	+	691.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR19A|LTR|ERVK	-13568.0	NM_001355432	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.86	4.61	5.55	2.7	8.86	1.61	0.0	6.19	3.75
Merged-chr11-59450515-1	chr11	59450015	59451015	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356452)	promoter-TSS (NM_001356452)	470.0	NM_001205068	194952.0	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	26.31	16.13	12.95	20.92	16.79	16.88	8.45	12.38	14.36
Merged-chr2-164949671-1	chr2	164949171	164950171	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013599, intron 3 of 12)	CpG-8834	1452.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	1.14	1.84	3.7	4.05	0.93	1.61	7.39	3.54	2.5
Merged-chr2-45196170-1	chr2	45195670	45196670	+	691.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-78728.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	174.48	231.77	172.04	157.88	158.15	178.44	211.24	207.82	141.14
Merged-chr17-63393011-1	chr17	63392511	63393511	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-80038.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	5.15	4.15	1.85	8.77	2.33	4.82	4.22	2.65	5.0
Merged-chr2-145785224-1	chr2	145784724	145785724	+	691.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	-892.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.86	0.92	3.7	2.02	4.67	4.82	3.17	3.54	1.25
Merged-chr5-109551318-3	chr5	109550936	109551936	+	690.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7557.0	NM_016715	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	11.44	9.22	6.47	4.05	2.8	3.22	7.39	4.42	5.62
Merged-chr10-98677004-1	chr10	98676504	98677504	+	690.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-237638.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	15.45	5.53	3.7	3.37	10.73	9.65	5.28	8.84	11.24
Merged-chr18-30365816-3	chr18	30365304	30366304	+	690.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	92939.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.29	1.84	3.7	2.02	4.67	0.0	1.06	6.19	3.12
Merged-chr14-74989505-3	chr14	74989002	74990002	+	690.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14416.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	9.15	5.07	5.55	5.4	4.67	7.23	5.28	3.1	3.75
Merged-chr14-17954224-2	chr14	17953720	17954720	+	690.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 3 of 9)	intron (NM_001113417, intron 3 of 9)	-27424.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	16.59	24.42	34.22	27.66	20.99	33.76	17.96	13.71	23.11
Merged-chr14-19707483-2	chr14	19706995	19707995	+	690.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43762.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	8.58	20.74	9.25	20.92	13.53	15.27	7.39	6.19	9.37
Merged-chr17-74017345-2	chr17	74016835	74017835	+	690.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053188)	TTS (NM_053188)	30581.0	NM_053188	94224.0	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	37.76	35.48	13.87	41.16	70.91	51.44	53.87	38.91	17.49
Merged-chr11-60930928-3	chr11	60930424	60931424	+	690.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	943.0	NR_027800	24082.0	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	10.87	4.61	5.55	9.45	8.86	7.23	19.01	7.07	3.75
Merged-chr13-6002668-3	chr13	6002176	6003176	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X3_LINE|LINE|RTE-BovB	141187.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.0	2.76	1.85	2.7	1.4	4.02	3.17	0.44	7.49
Merged-chr10-123209681-1	chr10	123209181	123210181	+	690.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12662.0	NM_001301628	14479.0	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	1.72	4.61	2.77	4.72	3.27	7.23	2.11	0.0	3.75
Merged-chr11-34025234-3	chr11	34024748	34025748	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-21680.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	22.31	18.43	22.2	22.94	22.86	23.31	21.12	33.16	21.86
Merged-chr1-132338173-3	chr1	132337670	132338670	+	690.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22045.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	8.58	6.91	7.4	8.77	5.13	8.04	9.51	8.84	8.74
Merged-chr9-10668796-2	chr9	10668288	10669288	+	690.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033359, intron 1 of 20)	intron (NM_001033359, intron 1 of 20)	235938.0	NM_001033359	244682.0	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	2.86	2.3	0.0	2.02	7.46	4.82	4.22	6.63	3.12
Merged-chr15-8411377-2	chr15	8410878	8411878	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201232, intron 1 of 45)	intron (NM_201232, intron 1 of 45)	33085.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	9.72	8.75	5.55	1.35	6.53	4.02	5.28	4.86	9.99
Merged-chr9-41129437-2	chr9	41128938	41129938	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	RSINE1|SINE|B4	28624.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	11.44	6.45	9.25	11.47	6.53	3.22	6.34	8.84	5.62
Merged-chr11-97540328-2	chr11	97539836	97540836	+	690.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 4 of 19)	intron (NM_018873, intron 4 of 19)	34790.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	3.43	0.92	1.85	0.67	2.33	0.0	7.39	0.88	5.0
Merged-chr17-45734168-3	chr17	45733647	45734647	+	690.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028164)	promoter-TSS (NM_028164)	-303.0	NM_028164	72240.0	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	10.87	2.3	1.85	9.45	4.2	7.23	5.28	5.75	1.25
Merged-chrX-99002085-3	chrX	99001572	99002572	+	690.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40509.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	14.3	9.22	7.4	13.49	7.46	18.49	10.56	14.15	2.5
Merged-chr1-134053441-2	chr1	134052976	134053976	+	690.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	16222.0	NM_021355	14264.0	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	2.86	2.3	7.4	9.45	1.4	0.8	3.17	0.88	1.25
Merged-chr14-60771225-3	chr14	60770723	60771723	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183175, intron 1 of 3)	L1MB2|LINE|L1	3089.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	8.01	5.07	3.7	4.05	1.4	1.61	5.28	4.42	2.5
Merged-chr13-46927019-3	chr13	46926498	46927498	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010617, intron 2 of 37)	intron (NM_010617, intron 2 of 37)	2720.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	26.89	25.8	24.05	16.19	16.33	25.72	35.91	34.49	21.86
Merged-chr4-117918937-3	chr4	117918432	117919432	+	690.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3933.0	NM_146152	230673.0	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	6.86	5.99	13.87	6.07	5.6	9.65	8.45	5.31	6.87
Merged-chr11-62847976-3	chr11	62847476	62848476	+	690.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033669, intron 1 of 12)	intron (NM_001033669, intron 1 of 12)	853.0	NM_001291441	213980.0	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	35.47	45.16	37.92	29.69	18.19	29.74	11.62	28.74	17.49
Merged-chr9-114852031-2	chr9	114851521	114852521	+	690.525024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7869.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	10.3	15.21	17.57	12.14	15.39	17.68	6.34	3.1	5.0
Merged-chr4-145219855-1	chr4	145219355	145220355	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011610, exon 9 of 10)	exon (NM_011610, exon 9 of 10)	-24850.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	24.03	22.12	24.05	16.87	13.06	17.68	29.57	14.15	24.36
Merged-chr13-45571901-1	chr13	45571401	45572401	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	64457.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.43	2.3	1.85	2.7	5.13	4.82	3.17	0.44	1.25
Merged-chrX-56447126-2	chrX	56446617	56447617	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7722.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	5.15	2.3	5.55	4.72	3.73	3.22	7.39	2.21	1.25
Merged-chr7-99891885-1	chr7	99891385	99892385	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164258, intron 8 of 18)	intron (NM_001164258, intron 8 of 18)	32667.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	6.29	5.99	1.85	5.4	2.33	8.04	6.34	1.77	1.87
Merged-chr12-37251190-1	chr12	37250690	37251690	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178767, intron 2 of 12)	intron (NM_178767, intron 2 of 12)	9551.0	NM_178767	319660.0	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	2.86	2.76	5.55	5.4	8.4	4.82	1.06	7.07	8.74
Merged-chr1-16637712-1	chr1	16637212	16638212	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-18374.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	1.72	5.07	6.47	4.72	7.46	9.65	8.45	2.65	9.99
Merged-chr6-70874587-2	chr6	70874083	70875083	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010121, intron 2 of 16)	intron (NM_010121, intron 2 of 16)	30068.0	NM_001313918	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	38.9	57.14	27.75	46.56	36.39	49.83	63.37	82.24	35.6
Merged-chr8-85488112-1	chr8	85487612	85488612	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-4505.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	5.72	1.84	3.7	26.99	37.79	32.15	21.12	19.46	11.24
Merged-chr9-55244270-2	chr9	55243784	55244784	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	35349.0	NM_028049	71999.0	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	4.0	2.76	6.47	3.37	2.8	8.04	4.22	2.65	3.75
Merged-chr4-133130016-2	chr4	133129499	133130499	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153423)	promoter-TSS (NM_153423)	-634.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	77.23	82.48	75.85	76.24	58.31	69.93	95.06	83.13	70.57
Merged-chr10-127527608-2	chr10	127527139	127528139	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	-5195.0	NM_028230	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	3.43	0.46	0.0	1.35	0.47	3.22	4.22	0.88	3.75
Merged-chr2-166630968-2	chr2	166630477	166631477	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 5 of 39)	intron (NM_177782, intron 5 of 39)	66455.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	17.73	19.35	16.65	22.27	13.53	19.29	17.96	14.15	8.74
Merged-chr17-83137936-2	chr17	83137428	83138428	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59703.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	7.44	2.3	3.7	2.02	0.93	8.84	5.28	0.44	11.24
Merged-chr4-59354626-1	chr4	59354126	59355126	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 10 of 16)	MLT1D|LTR|ERVL-MaLR	84007.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	60.07	52.07	45.32	33.74	33.12	40.19	20.07	15.03	19.98
Merged-chr11-22695323-3	chr11	22694770	22695770	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	164465.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	8.01	8.29	1.85	9.45	4.67	3.22	13.73	6.19	7.49
Merged-chr3-103858362-2	chr3	103857869	103858869	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1426.0	NR_104070	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	161.32	175.56	132.27	37.78	29.39	45.01	205.96	239.21	138.02
Merged-chr9-3025151-1	chr9	3024651	3025651	+	690.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	13592.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	167.04	581.97	71.22	207.81	613.93	69.13	379.17	257.78	61.2
Merged-chr16-35870225-2	chr16	35869715	35870715	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	1167.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	191.64	243.29	164.64	170.03	165.14	134.23	261.93	324.11	116.16
Merged-chr9-15035045-1	chr9	15034545	15035545	+	690.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	10433.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	37.76	29.49	34.22	36.43	30.32	36.17	39.08	20.78	20.61
Merged-chrX-95658487-3	chrX	95657999	95658999	+	690.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001289697)	promoter-TSS (NM_001289697)	10.0	NM_001289696	245522.0	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	17.73	14.28	14.8	12.14	14.93	20.09	12.67	29.18	18.11
Merged-chr19-37070069-3	chr19	37069580	37070580	+	690.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 7 of 10)	L1MA5|LINE|L1	-103763.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	13.73	19.35	5.55	10.8	13.53	12.86	54.92	27.41	27.48
Merged-chr9-49120168-3	chr9	49119651	49120651	+	690.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17372.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	6.29	13.36	5.55	8.1	5.6	20.09	6.34	4.42	3.75
Merged-chr3-21825085-3	chr3	21824588	21825588	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-251564.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	1.72	4.15	3.7	8.1	7.93	5.63	3.17	5.75	7.49
Merged-chr10-25200174-3	chr10	25199683	25200683	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001347460)	promoter-TSS (NM_001347460)	-13.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	4.0	3.23	7.4	3.37	3.73	11.25	5.28	0.88	3.75
Merged-chr11-6523841-3	chr11	6523357	6524357	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-2899.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	21.74	17.97	22.2	25.64	19.59	29.74	41.19	20.78	16.86
Merged-chr5-123830015-3	chr5	123829525	123830525	+	690.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35491.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	4.58	2.76	12.95	4.05	5.6	0.0	12.67	9.29	1.25
Merged-chr18-39442518-3	chr18	39442052	39443052	+	690.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	44693.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	26.31	24.42	22.2	17.54	13.06	20.9	16.9	19.9	10.62
Merged-chr5-8058261-2	chr5	8057756	8058756	+	690.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080974, intron 2 of 7)	intron (NM_001080974, intron 2 of 7)	1714.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	7.44	6.45	1.85	4.05	4.2	11.25	5.28	3.1	3.75
Merged-chr10-122806098-3	chr10	122805656	122806656	+	690.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	126841.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	12.01	15.21	26.82	14.17	12.13	12.86	15.84	14.59	12.49
Merged-chr5-112994459-2	chr5	112993956	112994956	+	690.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	21082.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	33.18	23.96	23.12	25.64	21.93	27.33	35.91	21.22	18.74
Merged-chr8-40408141-1	chr8	40407641	40408641	+	690.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15674.0	NM_178395	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	2.86	10.6	2.77	8.77	6.06	12.06	2.11	6.19	5.0
Merged-chr2-5041022-3	chr2	5040520	5041520	+	690.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356487, intron 5 of 13)	intron (NM_001356487, intron 5 of 13)	23097.0	NM_181848	71648.0	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	9.72	3.69	7.4	4.72	5.6	4.82	7.39	7.52	3.12
Merged-chr19-41242191-3	chr19	41241703	41242703	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133352, intron 5 of 14)	intron (NM_133352, intron 5 of 14)	21801.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	13.73	9.68	23.12	14.84	5.6	16.08	9.51	5.31	9.37
Merged-chr9-100731980-3	chr9	100731434	100732434	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009282, intron 3 of 33)	MTC|LTR|ERVL-MaLR	88486.0	NM_001357265	20842.0	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	24.03	25.34	17.57	26.99	7.93	6.43	11.62	7.07	5.0
Merged-chr12-108170650-3	chr12	108170130	108171130	+	690.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028262, intron 1 of 12)	intron (NM_028262, intron 1 of 12)	8654.0	NM_028262	52690.0	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	17.16	12.9	22.2	8.1	4.67	8.04	4.22	9.73	8.74
Merged-chr6-136742972-2	chr6	136742475	136743475	+	690.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145067, intron 10 of 25)	intron (NM_145067, intron 10 of 25)	38767.0	NM_145067	14917.0	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	9.72	13.36	11.1	11.47	8.86	1.61	6.34	1.77	2.5
Merged-chr4-63214382-2	chr4	63213906	63214906	+	690.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1006.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	1.72	0.92	1.85	2.7	0.93	2.41	2.11	0.0	1.25
Merged-chr8-117345378-2	chr8	117344886	117345886	+	690.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	-3784.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	26.89	22.58	14.8	45.21	28.46	30.54	15.84	8.4	7.49
Merged-chr13-35087841-2	chr13	35087342	35088342	+	690.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79962.0	NR_153831	75197.0	Mm.234091	NR_153831	ENSMUSG00000113906	4930529N20Rik	-	RIKEN cDNA 4930529N20 gene	ncRNA	4.0	7.37	4.62	6.75	4.67	15.27	1.06	2.21	11.24
Merged-chr4-133176216-3	chr4	133175725	133176725	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-19430.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	87.52	118.42	104.52	123.47	132.49	99.67	116.18	117.17	89.31
Merged-chr1-84933707-3	chr1	84933268	84934268	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	1315.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	2.86	4.61	0.0	4.72	4.67	3.22	3.17	2.65	1.25
Merged-chr1-105356581-3	chr1	105356080	105357080	+	690.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151538, exon 1 of 2)	non-coding (NR_151538, exon 1 of 2)	130.0	NM_178779	320311.0	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	4.0	3.23	0.92	4.72	3.27	8.04	4.22	3.54	6.25
Merged-chr9-40872222-3	chr9	40871712	40872712	+	690.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1915.0	NM_178245	244813.0	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	6.29	6.91	1.85	3.37	3.73	1.61	10.56	7.52	5.0
Merged-chr15-5517594-2	chr15	5517007	5518007	+	690.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045274, intron 1 of 4)	intron (NR_045274, intron 1 of 4)	21189.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	29.17	49.76	27.75	56.68	61.11	48.23	54.92	56.6	45.59
Merged-chr10-118970817-3	chr10	118970326	118971326	+	690.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43683.0	NR_110482	216377.0	Mm.208936	NR_110482	ENSMUSG00000112854	Gm38403	C230029M16	predicted gene, 38403	ncRNA	4.58	3.69	3.7	7.42	5.6	3.22	4.22	5.75	3.12
Merged-chr14-55689741-2	chr14	55689267	55690267	+	690.133301	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-7950.0	NM_145705	28113.0	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	13.73	7.83	14.8	28.34	12.6	15.27	14.79	12.38	14.99
Merged-chr15-41973475-2	chr15	41972978	41973978	+	690.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103758.0	NM_175456	223513.0	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	1.14	4.15	0.0	3.37	0.93	4.02	0.0	3.1	5.0
Merged-chr2-148535781-2	chr2	148535291	148536291	+	690.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92256.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.72	3.69	8.32	3.37	3.27	0.8	6.34	2.21	5.62
Merged-chr9-102867100-1	chr9	102866600	102867600	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042607, intron 2 of 14)	intron (NM_001042607, intron 2 of 14)	32180.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	2.86	2.76	3.7	2.7	0.47	3.22	0.0	1.33	1.25
Merged-chr2-6716696-2	chr2	6716200	6717200	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	4962.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	69.22	71.88	43.47	49.25	40.59	57.07	74.99	64.11	41.22
Merged-chrX-36902918-3	chrX	36902405	36903405	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029891)	promoter-TSS (NM_029891)	-6.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	34.32	24.88	19.42	32.39	20.53	20.09	16.9	26.09	21.86
Merged-chr15-30616491-1	chr15	30615991	30616991	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-422635.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	9.72	12.9	9.25	16.19	15.39	3.22	9.51	8.4	7.49
Merged-chr4-59332496-2	chr4	59332037	59333037	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163288, intron 13 of 16)	intron (NM_001163288, intron 13 of 16)	72486.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	97.82	104.14	86.95	118.08	130.16	110.92	39.08	36.26	18.74
Merged-chr12-12247998-1	chr12	12247498	12248498	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14141.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	32.04	52.53	40.7	22.27	18.66	16.88	43.3	57.92	31.85
Merged-chr6-99095761-2	chr6	99095276	99096276	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-67478.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	19.45	27.19	22.2	24.96	30.32	20.9	19.01	14.15	6.25
Merged-chr5-92091848-1	chr5	92091348	92092348	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-8104.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	17.73	17.05	13.87	4.72	10.26	17.68	12.67	8.84	15.61
Merged-chr15-25237865-1	chr15	25237365	25238365	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	175899.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.43	5.53	5.55	2.7	3.73	4.82	3.17	2.65	5.0
Merged-chr1-91299236-3	chr1	91298768	91299768	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016717, intron 1 of 11)	intron (NM_016717, intron 1 of 11)	930.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	93.82	129.48	71.22	122.8	144.15	104.49	97.17	137.96	69.32
Merged-chr10-59899747-2	chr10	59899244	59900244	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20153.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.58	2.3	5.55	2.7	2.8	4.82	4.22	5.31	7.49
Merged-chr10-44777401-2	chr10	44776905	44777905	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-289809.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.29	3.23	7.4	6.07	5.6	3.22	3.17	3.1	1.25
Merged-chr15-6339960-1	chr15	6339460	6340460	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	40171.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	26.89	30.87	20.35	40.48	36.85	41.8	23.24	16.36	17.49
Merged-chr11-49201277-2	chr11	49200784	49201784	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2216.0	NM_001024846	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	28.6	23.5	12.95	18.89	13.06	29.74	17.96	9.29	15.61
Merged-chr17-67451199-1	chr17	67450699	67451699	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96708.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	43.48	41.01	32.37	30.36	24.26	31.35	55.98	47.31	31.85
Merged-chr14-122475406-2	chr14	122474821	122475821	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	-63.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	3.43	0.92	1.85	4.05	0.47	0.0	2.11	1.33	3.75
Merged-chr15-83128863-1	chr15	83128363	83129363	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347082, intron 7 of 7)	intron (NM_001347082, intron 7 of 7)	-6062.0	NM_029101	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	76.66	67.74	37.92	98.51	60.65	51.44	95.06	107.45	49.34
Merged-chr2-84494277-1	chr2	84493777	84494777	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	12596.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	2.29	4.15	4.62	3.37	5.13	1.61	2.11	1.77	7.49
Merged-chr14-20378470-1	chr14	20377970	20378970	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001360365, exon 8 of 11)	exon (NM_001360365, exon 8 of 11)	10440.0	NM_134081	108671.0	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	4.0	4.15	11.1	5.4	0.93	3.22	6.34	2.65	5.62
Merged-chr8-126567100-2	chr8	126566604	126567604	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26332.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	33.75	23.04	35.15	35.09	20.53	20.09	14.79	6.19	8.74
Merged-chr6-97396331-1	chr6	97395831	97396831	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	intron (NM_145148, intron 5 of 23)	62955.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	86.95	113.35	96.2	78.27	67.64	88.42	91.89	97.28	86.18
Merged-chr1-60860681-1	chr1	60860181	60861181	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48344.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	6.29	1.84	0.0	4.72	1.87	0.0	7.39	1.33	5.0
Merged-chr5-139324181-1	chr5	139323681	139324681	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172723, intron 1 of 10)	intron (NM_172723, intron 1 of 10)	1283.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	34.32	24.88	21.27	19.57	33.12	40.19	34.85	16.8	32.48
Merged-chr10-41261850-1	chr10	41261350	41262350	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133999, intron 10 of 22)	intron (NM_133999, intron 10 of 22)	41391.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	20.02	22.58	20.35	16.19	9.33	2.41	22.18	15.92	17.49
Merged-chr17-34091084-1	chr17	34090584	34091584	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_046183, intron 3 of 4)	B3A|SINE|B2	-1295.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	6.29	1.38	2.77	4.05	2.33	0.0	2.11	2.21	1.25
Merged-chr3-48308627-1	chr3	48308127	48309127	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2A1|LINE|L1	-281868.0	NR_040408	666202.0	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	1.14	4.15	1.85	2.7	0.47	6.43	0.0	1.33	3.75
Merged-chr10-13429926-2	chr10	13429427	13430427	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	-40957.0	NM_001195066	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	3.43	1.84	0.0	4.05	1.4	1.61	0.0	3.1	2.5
Merged-chr1-191244422-1	chr1	191243922	191244922	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19968.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	3.43	6.45	9.25	5.4	5.13	8.84	4.22	3.98	1.25
Merged-chr5-53087555-1	chr5	53087055	53088055	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38202.0	NM_011402	20531.0	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	1.72	1.84	1.85	4.72	2.8	3.22	4.22	0.0	6.25
Merged-chr6-67124281-1	chr6	67123781	67124781	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86874.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	5.15	2.76	1.85	2.7	2.33	3.22	4.22	0.0	2.5
Merged-chr4-107922133-2	chr4	107921649	107922649	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	1440.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	81.8	49.76	37.92	69.5	32.66	20.09	68.65	53.94	25.61
Merged-chr10-122987953-3	chr10	122987446	122988446	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NR_029527	387251.0		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	9.15	10.14	9.25	10.8	8.86	8.84	10.56	10.17	5.62
Merged-chr1-57430918-1	chr1	57430418	57431418	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24244.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	5.72	4.61	0.0	12.82	11.2	4.82	3.17	2.21	6.25
Merged-chr16-70333287-1	chr16	70332787	70333787	+	690.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 1 of 15)	AT_rich|Low_complexity|Low_complexity	19338.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	3.43	0.92	0.92	1.35	4.67	0.0	10.56	7.96	8.74
Merged-chr3-30508474-1	chr3	30507974	30508974	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361034, intron 1 of 16)	CpG	1201.0	NM_001361034	14013.0	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	2.29	0.92	1.85	2.02	0.93	3.22	0.0	0.0	2.5
Merged-chr9-5333604-2	chr9	5333093	5334093	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007609, intron 7 of 8)	ORR1A4-int|LTR|ERVL-MaLR	-11883.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	4.58	4.61	11.1	2.02	6.06	14.47	8.45	6.19	11.87
Merged-chr2-5529036-1	chr2	5528536	5529536	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	147010.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	8.58	9.68	6.47	12.82	2.33	8.04	4.22	4.86	5.62
Merged-chr14-120362749-3	chr14	120362215	120363215	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	56263.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	42.33	35.94	30.52	91.09	59.71	92.44	82.38	90.2	37.47
Merged-chr16-43506436-1	chr16	43505936	43506936	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-86240.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	11.44	2.76	1.85	6.75	5.6	5.63	8.45	3.54	1.87
Merged-chr5-30711803-2	chr5	30711304	30712304	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001356949, exon 1 of 3)	5' UTR (NM_001356949, exon 1 of 3)	240.0	NM_023047	65254.0	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	1.72	1.84	5.55	4.05	4.2	1.61	2.11	0.0	1.25
Merged-chr15-31364183-1	chr15	31363683	31364683	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	3576.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	1.14	1.38	3.7	0.67	1.4	0.0	2.11	0.88	3.75
Merged-chr11-67559168-1	chr11	67558668	67559668	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	26170.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	8.01	0.92	1.85	8.1	2.33	8.04	25.35	8.84	3.12
Merged-chr9-102981005-1	chr9	102980505	102981505	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27484.0	NM_033314	24059.0	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.58	4.61	3.7	4.72	2.8	1.61	4.22	3.54	0.0
Merged-chr5-4934707-1	chr5	4934207	4935207	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 11 of 14)	intron (NM_011074, intron 11 of 14)	-176491.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	27.46	20.27	27.75	20.24	14.0	8.04	14.79	16.36	6.87
Merged-chr3-144587289-1	chr3	144586789	144587789	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	L1MB3|LINE|L1	16862.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	46.91	64.05	24.05	42.51	41.99	40.19	36.97	22.55	23.73
Merged-chr10-19992045-1	chr10	19991545	19992545	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	57519.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	5.15	1.84	0.92	4.72	8.4	2.41	8.45	0.88	1.25
Merged-chr10-83101615-1	chr10	83101115	83102115	+	690.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	116118.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	2.86	3.69	6.47	8.77	7.93	4.02	9.51	3.1	0.0
Merged-chr15-98776489-2	chr15	98776015	98777015	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011718, intron 3 of 4)	CpG	1635.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	3.43	0.0	3.7	2.7	2.8	0.0	5.28	0.88	3.75
Merged-chr6-145857648-2	chr6	145857142	145858142	+	690.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024469)	TTS (NM_024469)	7778.0	NM_024469	79362.0	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	3.43	7.37	3.7	6.07	7.93	3.22	5.28	3.98	5.62
Merged-chr5-139288594-3	chr5	139288102	139289102	+	689.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	35105.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	66.93	49.3	56.42	56.68	39.19	89.22	71.82	44.66	38.1
Merged-chr11-64615348-3	chr11	64614862	64615862	+	689.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-178688.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	2.86	11.06	0.0	4.05	5.13	9.65	6.34	4.42	7.49
Merged-chr16-24964518-3	chr16	24964017	24965017	+	689.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-95122.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	2.86	11.06	5.55	10.8	7.0	0.0	10.56	4.86	6.25
Merged-chr19-33122788-2	chr19	33122274	33123274	+	689.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34338.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	2.29	2.76	2.77	6.07	5.13	0.0	3.17	2.21	2.5
Merged-chrX-35897858-2	chrX	35897363	35898363	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	9031.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	29.17	31.79	32.37	20.92	23.33	22.51	28.52	25.65	21.23
Merged-chr3-57695905-2	chr3	57695407	57696407	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-3370.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	26.31	16.13	20.35	12.14	11.2	9.65	3.17	4.86	1.87
Merged-chr13-55028586-2	chr13	55028100	55029100	+	689.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011307, exon 15 of 15)	exon (NM_011307, exon 15 of 15)	-7215.0	NM_001033245	212032.0	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	39.47	33.64	28.67	15.52	20.99	26.53	28.52	34.93	23.11
Merged-chr8-120664729-3	chr8	120664197	120665197	+	689.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010926, intron 1 of 4)	intron (NM_010926, intron 1 of 4)	3415.0	NM_010926	18117.0	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	29.17	16.59	35.15	28.34	22.39	26.53	19.01	15.03	26.85
Merged-chr11-107025795-3	chr11	107025250	107026250	+	689.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2473.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	14.87	5.07	3.7	4.72	3.73	5.63	2.11	6.63	5.0
Merged-chr19-24556240-3	chr19	24555741	24556741	+	689.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008846)	promoter-TSS (NM_008846)	-369.0	NM_008846	18719.0	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	1.14	0.46	1.85	4.05	3.73	0.0	4.22	3.1	5.0
Merged-chr6-5174549-3	chr6	5174006	5175006	+	689.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011134, intron 7 of 8)	intron (NM_011134, intron 7 of 8)	19440.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	10.3	2.3	6.47	2.7	5.13	16.88	4.22	4.42	2.5
Merged-chr7-34229535-3	chr7	34229045	34230045	+	689.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008155, intron 1 of 17)	intron (NM_008155, intron 1 of 17)	791.0	NM_008155	14751.0	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	28.6	19.35	30.52	24.96	28.92	40.19	38.02	25.2	21.86
Merged-chr7-19029463-2	chr7	19028961	19029961	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360713, intron 3 of 22)	intron (NM_001360713, intron 3 of 22)	5084.0	NM_026605	68188.0	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	4.0	0.92	2.77	6.07	1.87	2.41	5.28	0.88	4.37
Merged-chr5-122154762-1	chr5	122154262	122155262	+	689.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3517.0	NM_013636	19047.0	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	3.43	3.23	5.55	3.37	3.27	4.82	16.9	10.17	6.25
Merged-chr15-89339877-3	chr15	89339361	89340361	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5388.0	NM_019977	56727.0	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	9.72	4.15	1.85	6.75	4.67	8.84	10.56	4.42	1.25
Merged-chr19-10041592-2	chr19	10041167	10042167	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021890, exon 1 of 12)	5' UTR (NM_021890, exon 1 of 12)	119.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	1.72	4.61	9.25	3.37	2.8	6.43	7.39	0.88	3.75
Merged-chr10-56107347-2	chr10	56106878	56107878	+	689.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163833, intron 1 of 1)	intron (NM_001163833, intron 1 of 1)	461.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	96.11	111.51	24.05	92.44	147.88	66.71	98.23	156.97	46.22
Merged-chr6-116459341-2	chr6	116458858	116459858	+	689.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009662, intron 1 of 13)	intron (NM_009662, intron 1 of 13)	1820.0	NM_009662	11689.0	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	16.59	30.41	5.55	21.59	17.73	22.51	12.67	11.5	18.74
Merged-chr6-17284085-2	chr6	17283579	17284579	+	689.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	2894.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	9.15	4.15	3.7	8.77	5.6	8.04	4.22	7.07	1.25
Merged-chr10-111226685-1	chr10	111226185	111227185	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175489, intron 3 of 23)	intron (NM_175489, intron 3 of 23)	61883.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	9.15	1.84	1.85	2.02	2.33	1.61	4.22	2.65	4.37
Merged-chr2-164487260-3	chr2	164486707	164487707	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001048229)	promoter-TSS (NM_001048229)	330.0	NM_001048228	52840.0	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	93.82	66.35	60.12	89.74	67.18	65.11	36.97	25.65	22.48
Merged-chr3-100420077-1	chr3	100419577	100420577	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6328.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	2.86	2.3	0.0	2.7	7.0	0.0	3.17	4.42	3.75
Merged-chr5-27206394-1	chr5	27205894	27206894	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207282, intron 1 of 25)	intron (NM_207282, intron 1 of 25)	-55541.0	NM_001136060	13483.0	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.57	5.99	5.55	6.75	5.6	3.22	2.11	3.1	4.37
Merged-chr1-131116132-3	chr1	131115625	131116625	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18282.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	2.86	4.61	1.85	5.4	2.33	1.61	4.22	3.1	0.62
Merged-chr18-77949704-3	chr18	77949194	77950194	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195633, intron 2 of 43)	intron (NM_001195633, intron 2 of 43)	11227.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	17.73	13.82	16.65	10.8	6.53	4.82	16.9	20.78	8.12
Merged-chr4-129884236-1	chr4	129883736	129884736	+	689.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21990.0	NR_045190	319894.0	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	46.91	58.06	56.42	47.9	40.12	63.5	49.64	35.37	66.82
Merged-chr17-86906328-3	chr17	86905805	86906805	+	689.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11043.0	NM_001277980	78469.0	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.43	3.69	0.0	3.37	0.93	0.0	3.17	1.33	1.25
Merged-chr17-86300864-2	chr17	86300368	86301368	+	689.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	-13690.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	18.31	14.75	7.4	43.86	33.12	33.76	20.07	18.13	11.24
Merged-chr18-11658316-2	chr18	11657833	11658833	+	689.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 1 of 18)	B1_Mur1|SINE|Alu	984.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	113.84	94.46	84.17	68.82	63.91	51.44	161.6	149.89	68.7
Merged-chr10-75499513-3	chr10	75499036	75500036	+	689.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17845.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	18.88	16.59	18.5	13.49	17.26	24.92	16.9	11.5	14.99
Merged-chr1-64597710-3	chr1	64597188	64598188	+	689.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	19480.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	89.81	122.11	52.72	87.04	55.51	39.39	77.1	81.8	70.57
Merged-chr19-42147377-2	chr19	42146874	42147874	+	689.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183195)	promoter-TSS (NM_183195)	-15.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	62.35	53.91	49.95	72.87	49.92	65.11	29.57	14.59	20.61
Merged-chr6-83013714-2	chr6	83013215	83014215	+	689.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 7 of 9)	intron (NM_033079, intron 7 of 9)	19756.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	33.18	40.09	13.87	24.96	14.93	34.56	4.22	4.86	4.37
Merged-chr14-71218834-2	chr14	71218335	71219335	+	689.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	-32438.0	NR_046075	100043132.0	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	19.45	15.67	0.0	10.8	11.66	1.61	1.06	2.21	3.75
Merged-chr1-55822812-2	chr1	55822320	55823320	+	689.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108421.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.0	10.6	5.55	17.54	27.06	28.94	10.56	14.59	12.49
Merged-chr9-65547914-3	chr9	65547418	65548418	+	689.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32169.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	76.66	95.84	74.0	61.4	40.59	53.05	67.6	60.13	52.46
Merged-chr5-67943388-2	chr5	67942908	67943908	+	689.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038182)	promoter-TSS (NR_038182)	-327.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	13.16	6.91	7.4	9.45	7.46	5.63	4.22	3.54	3.75
Merged-chr2-48930486-2	chr2	48929990	48930990	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149356, intron 6 of 13)	intron (NR_149356, intron 6 of 13)	18777.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	7.44	11.98	4.62	12.82	13.53	10.45	14.79	9.73	16.24
Merged-chrX-52913364-2	chrX	52912858	52913858	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290546, intron 1 of 8)	intron (NM_001290546, intron 1 of 8)	1144.0	NM_001290546	70998.0	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	48.05	54.83	53.65	32.39	37.79	27.33	62.31	87.11	31.85
Merged-chr5-135551125-2	chr5	135550633	135551633	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6011.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	20.59	11.98	17.57	30.36	12.13	19.29	13.73	9.29	7.49
Merged-chr11-69052966-1	chr11	69052466	69053466	+	689.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-6809.0	NM_028005	71923.0	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	10.3	5.99	12.02	6.07	9.33	12.86	10.56	4.42	3.75
Merged-chr8-121116612-1	chr8	121116112	121117112	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013519, exon 1 of 1)	5' UTR (NM_013519, exon 1 of 1)	441.0	NM_013519	14234.0	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	3.43	2.76	0.0	2.7	0.93	0.0	5.28	1.33	1.25
Merged-chr16-9132970-2	chr16	9132470	9133470	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	302870.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.0	2.76	3.7	10.12	8.86	18.49	6.34	6.19	9.99
Merged-chr16-38721621-1	chr16	38721121	38722121	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8586.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	0.46	3.7	1.35	0.47	3.22	1.06	0.0	0.0
Merged-chr6-38954853-2	chr6	38954373	38955373	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 3 of 12)	(CACCAT)n|Simple_repeat|Simple_repeat	35887.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	12.01	5.99	2.77	4.05	3.73	3.22	9.51	6.19	3.12
Merged-chr17-51288923-2	chr17	51288424	51289424	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	RLTR53_Mm|LTR|ERVK	10936.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	6.86	2.3	0.0	4.05	6.53	0.0	2.11	2.65	5.0
Merged-chr6-22325830-2	chr6	22325307	22326307	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138587, intron 5 of 9)	intron (NM_138587, intron 5 of 9)	30274.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	4.0	2.76	3.7	6.07	0.93	4.02	1.06	0.88	5.0
Merged-chr15-101188221-3	chr15	101187735	101188735	+	689.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007395, intron 1 of 8)	intron (NM_007395, intron 1 of 8)	-5634.0	NR_105927	102466774.0		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	22.31	12.9	7.4	7.42	3.73	5.63	7.39	8.84	10.62
Merged-chr3-97231449-2	chr3	97230950	97231950	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4086.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	44.05	76.49	43.47	25.64	29.86	32.15	65.48	63.23	41.22
Merged-chr8-128454909-1	chr8	128454409	128455409	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	95668.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	24.6	27.65	32.37	26.99	35.92	33.76	11.62	21.22	10.62
Merged-chr12-102182083-1	chr12	102181583	102182583	+	689.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	53356.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	10.3	2.3	5.55	4.72	3.27	0.0	1.06	0.0	2.5
Merged-chr4-35105492-3	chr4	35104994	35105994	+	689.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-46561.0	NM_199157	387510.0	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	6.86	8.29	0.0	7.42	6.06	1.61	5.28	0.88	5.0
Merged-chr9-61337316-3	chr9	61336839	61337839	+	689.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35027.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	7.44	2.76	1.85	2.7	1.87	0.0	3.17	1.77	3.75
Merged-chr14-121000686-1	chr14	121000186	121001186	+	689.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-34888.0	NM_134082	223254.0	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	4.0	2.76	0.0	1.35	1.4	8.04	5.28	7.07	5.0
Merged-chr11-94086955-2	chr11	94086451	94087451	+	689.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025428, intron 10 of 26)	(TTTTG)n|Simple_repeat|Simple_repeat	42746.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.0	4.61	3.7	37.11	25.66	23.31	29.57	22.11	18.74
Merged-chr17-28702185-3	chr17	28701691	28702691	+	689.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	9623.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	79.52	82.94	51.8	97.83	76.04	65.91	67.6	68.09	66.82
Merged-chr2-167188969-3	chr2	167188429	167189429	+	689.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008420)	promoter-TSS (NM_008420)	-111.0	NM_008420	16500.0	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	5.72	1.84	0.0	3.37	0.0	1.61	3.17	3.54	0.0
Merged-chr2-26561856-3	chr2	26561367	26562367	+	689.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19189.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	3.43	3.23	7.4	6.75	1.87	9.65	3.17	3.98	3.75
Merged-chr3-52990260-2	chr3	52989773	52990773	+	689.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026225, intron 15 of 18)	intron (NM_026225, intron 15 of 18)	26950.0	NM_026225	67542.0	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	5.15	3.23	3.7	3.37	7.93	1.61	4.22	0.88	5.0
Merged-chr14-52083294-3	chr14	52082792	52083792	+	689.344421	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016884, intron 3 of 8)	intron (NM_016884, intron 3 of 8)	13977.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	6.29	12.44	7.4	11.47	8.4	8.84	9.51	5.75	7.49
Merged-chr2-27503838-2	chr2	27503336	27504336	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-11311.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	10.87	6.91	5.55	9.45	14.93	20.09	17.96	19.46	5.0
Merged-chr2-31596694-2	chr2	31596175	31597175	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290548, intron 6 of 18)	intron (NM_001290548, intron 6 of 18)	-15746.0	NR_105964	102466214.0		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	5.72	8.75	9.25	5.4	7.46	16.88	10.56	4.86	6.25
Merged-chr2-163756004-2	chr2	163755496	163756496	+	689.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5757.0	NM_001272052	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	8.58	10.14	11.1	28.34	12.13	4.82	1.06	3.98	1.25
Merged-chr19-42166347-2	chr19	42165849	42166849	+	689.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4218.0	NM_177319	319740.0	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	14.87	7.83	7.4	8.77	6.53	4.82	8.45	8.84	5.0
Merged-chr18-61098374-2	chr18	61097889	61098889	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME3B|LINE|L1	-7183.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	149.31	128.56	80.47	112.0	80.71	86.81	133.08	137.96	76.19
Merged-chr7-45010174-2	chr7	45009693	45010693	+	689.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008422, intron 6 of 10)	intron (NM_001008422, intron 6 of 10)	2294.0	NR_106021	102466218.0		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	26.89	24.42	22.2	63.42	39.19	36.17	73.93	59.69	36.22
Merged-chr18-67390007-1	chr18	67389507	67390507	+	689.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026473)	promoter-TSS (NM_026473)	-724.0	NM_026473	67951.0	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	62.35	48.38	24.05	72.19	40.59	32.96	47.53	41.56	31.23
Merged-chr11-118457894-1	chr11	118457394	118458394	+	689.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2899.0	NR_045902	100126224.0	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	-	predicted gene 11747	ncRNA	197.93	186.16	124.87	287.43	252.85	213.81	236.59	266.18	144.89
Merged-chr2-12418877-3	chr2	12418379	12419379	+	689.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355537, intron 1 of 13)	CpG	581.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	48.05	39.17	36.07	45.21	40.59	46.62	83.44	47.75	37.47
Merged-chr17-27588516-1	chr17	27588016	27589016	+	689.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-22789.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	44.05	34.56	25.9	11.47	3.27	17.68	28.52	23.88	9.99
Merged-chr10-127655463-3	chr10	127654964	127655964	+	689.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009284, exon 13 of 22)	exon (NM_009284, exon 13 of 22)	11239.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	9.15	11.98	29.6	10.8	13.06	13.66	22.18	16.8	16.86
Merged-chr17-47766205-2	chr17	47765711	47766711	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-19533.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	61.21	87.55	72.15	76.24	106.36	105.3	124.63	119.39	89.93
Merged-chr14-26640109-3	chr14	26639600	26640600	+	689.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B1_Mur4|SINE|Alu	1966.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	76.66	77.41	37.0	59.38	41.52	16.08	79.21	61.9	48.71
Merged-chr4-21775648-2	chr4	21775136	21776136	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290425)	promoter-TSS (NM_001290425)	-634.0	NM_001290425	77593.0	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	8.58	10.6	5.55	10.12	15.86	12.06	31.69	25.65	6.87
Merged-chr6-50685234-2	chr6	50684757	50685757	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30864.0	NM_021892	60531.0	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	5.15	3.23	0.0	6.07	7.0	8.04	7.39	5.75	7.49
Merged-chr18-13006535-2	chr18	13006058	13007058	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153087)	promoter-TSS (NM_153087)	-432.0	NM_153087	225192.0	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	6.29	8.29	3.7	9.45	6.53	6.43	7.39	11.05	0.62
Merged-chr1-131678222-2	chr1	131677720	131678720	+	689.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10475.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	6.29	3.69	0.0	5.4	5.13	5.63	13.73	9.73	6.25
Merged-chr5-24077509-3	chr5	24077006	24078006	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23084.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	7.44	4.15	1.85	7.42	7.93	2.41	7.39	4.86	2.5
Merged-chr12-8635772-3	chr12	8635306	8636306	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36740.0	NM_177802	328059.0	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	4.58	5.99	16.65	4.72	3.27	0.8	3.17	14.59	11.24
Merged-chr14-66282789-3	chr14	66282273	66283273	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1721.0	NM_001162365	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	4.0	2.3	1.85	2.7	1.87	6.43	3.17	3.98	1.25
Merged-chr7-4796188-3	chr7	4795693	4796693	+	689.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	3228.0	NM_009081	19943.0	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	11.44	4.61	0.92	5.4	2.8	4.82	1.06	1.77	2.5
Merged-chr16-11317558-3	chr16	11317061	11318061	+	689.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011608, intron 2 of 2)	L1MA9|LINE|L1	3752.0	NM_011608	21935.0	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	9.72	15.67	7.4	16.19	14.93	21.7	17.96	7.52	9.99
Merged-chr7-122925290-3	chr7	122924807	122925807	+	689.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	45152.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	52.06	51.15	33.3	40.48	23.79	38.58	29.57	38.03	26.23
Merged-chr17-74414814-2	chr17	74414335	74415335	+	689.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252478, intron 10 of 13)	intron (NM_001252478, intron 10 of 13)	19227.0	NM_144798	210148.0	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	15.45	14.28	17.57	12.82	3.27	20.9	14.79	3.54	10.62
Merged-chr14-50897609-3	chr14	50897132	50898132	+	689.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4377.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	23.45	25.8	32.37	20.92	9.33	13.66	13.73	20.78	21.86
Merged-chr2-30554039-3	chr2	30553547	30554547	+	689.0888669999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	-40997.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.58	0.92	8.32	4.05	2.8	0.0	4.22	2.21	3.12
Merged-chr4-143389416-2	chr4	143388913	143389913	+	689.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5028.0	NM_031377	83491.0	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	6.86	8.75	12.95	7.42	6.53	5.63	3.17	6.63	5.62
Merged-chr5-81137306-3	chr5	81136783	81137783	+	689.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198702, intron 2 of 27)	MTD|LTR|ERVL-MaLR	115690.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	12.01	7.37	7.4	1.35	1.87	1.61	8.45	4.86	2.5
Merged-chr4-150589562-1	chr4	150589062	150590062	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	62612.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	89.24	94.92	58.27	66.12	37.79	46.62	85.55	68.09	28.1
Merged-chr7-127410726-1	chr7	127410226	127411226	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3904.0	NM_001167832	233893.0	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	3.43	1.84	0.0	6.07	3.27	6.43	3.17	8.4	2.5
Merged-chr2-103059459-1	chr2	103058959	103059959	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	14054.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	14.87	20.27	10.17	23.62	15.86	8.04	6.34	14.59	6.25
Merged-chr8-35607912-1	chr8	35607412	35608412	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-18892.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.29	6.91	5.55	2.7	5.6	5.63	5.28	6.19	3.75
Merged-chr14-7851924-2	chr14	7851429	7852429	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	33972.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	6.86	2.76	3.7	8.77	3.27	3.22	1.06	3.54	8.74
Merged-chr4-137863095-1	chr4	137862595	137863595	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199307, intron 1 of 19)	intron (NM_199307, intron 1 of 19)	858.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	29.17	17.51	19.42	29.69	25.66	39.39	17.96	7.07	7.49
Merged-chr6-28949462-1	chr6	28948962	28949962	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73157.0	NR_029567	387237.0		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.57	2.3	1.85	0.0	1.87	2.41	2.11	0.44	0.0
Merged-chr2-48814773-1	chr2	48814273	48815273	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007396, exon 1 of 11)	exon (NM_007396, exon 1 of 11)	664.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	67.5	64.97	87.87	69.5	63.91	73.95	96.11	80.92	69.32
Merged-chr16-43966937-1	chr16	43966437	43967437	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12113.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	36.61	28.11	19.42	19.57	27.06	31.35	20.07	8.84	20.61
Merged-chr4-56133483-1	chr4	56132983	56133983	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-601008.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	6.86	4.15	9.25	4.05	4.67	4.82	0.0	2.65	6.25
Merged-chr13-9826415-1	chr13	9825915	9826915	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-61094.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	8.01	3.23	2.77	5.4	2.33	3.22	5.28	2.65	6.25
Merged-chr5-135743609-1	chr5	135743109	135744109	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172541, intron 1 of 11)	intron (NM_172541, intron 1 of 11)	563.0	NM_172541	215210.0	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	20.02	30.87	21.27	37.78	23.79	22.51	28.52	25.2	14.99
Merged-chr11-86687542-1	chr11	86687042	86688042	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001098810, intron 1 of 1)	intron (NM_001098810, intron 1 of 1)	3461.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	12.01	11.52	2.77	10.12	7.0	8.04	7.39	5.75	16.86
Merged-chr11-29707954-1	chr11	29707454	29708454	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_194051, exon 3 of 9)	exon (NM_194051, exon 3 of 9)	-10609.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	25.74	47.46	37.92	30.36	55.51	33.76	67.6	61.02	48.71
Merged-chr16-31285367-1	chr16	31284867	31285867	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10090.0	NM_025800	66849.0	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|I-2|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	5.15	2.3	4.62	3.37	4.67	0.0	2.11	2.21	7.49
Merged-chr4-155469077-1	chr4	155468577	155469577	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253856)	promoter-TSS (NM_001253856)	-37.0	NM_001253856	69671.0	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	2.86	2.76	1.85	6.75	5.13	7.23	3.17	3.1	0.0
Merged-chr5-139331878-1	chr5	139331378	139332378	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6414.0	NM_172723	231821.0	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	6.86	1.38	7.4	8.1	0.47	1.61	4.22	5.75	1.87
Merged-chr5-102067125-1	chr5	102066625	102067625	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	2796.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	73.22	84.78	82.32	114.7	75.11	83.59	160.54	183.94	94.93
Merged-chr11-55209859-2	chr11	55209345	55210345	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	5505.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	23.45	15.21	13.87	20.92	17.26	15.27	19.01	9.73	28.73
Merged-chr12-111551244-1	chr12	111550744	111551744	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10298.0	NR_033168	100316932.0	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	16.02	5.53	6.47	3.37	5.13	3.22	4.22	4.86	0.62
Merged-chr6-98329591-1	chr6	98329091	98330091	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128092, intron 2 of 3)	intron (NM_001128092, intron 2 of 3)	13163.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	2.86	1.38	9.25	6.75	4.67	0.8	4.22	5.31	1.25
Merged-chr10-39402764-2	chr10	39402252	39403252	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	MTC|LTR|ERVL-MaLR	32953.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	6.86	9.22	6.47	12.82	7.46	26.53	9.51	2.65	5.62
Merged-chr3-27735353-1	chr3	27734853	27735853	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24901.0	NM_173182	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.29	2.76	0.0	4.05	0.93	1.61	2.11	1.77	4.37
Merged-chr17-80252922-1	chr17	80252422	80253422	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198942, intron 15 of 22)	intron (NM_198942, intron 15 of 22)	28471.0	NM_001355458	67242.0	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem nuclear organelle associated protein 6	protein-coding	2.86	5.07	5.55	15.52	16.33	17.68	6.34	5.31	11.24
Merged-chr10-111412207-1	chr10	111411707	111412707	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61020.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	13.16	16.13	20.35	18.89	8.86	22.51	22.18	19.01	16.24
Merged-chr12-85393697-1	chr12	85393197	85394197	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18980.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	108.12	125.79	92.5	146.41	123.16	139.06	101.39	112.75	86.18
Merged-chr1-64308174-1	chr1	64307674	64308674	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-186785.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	81.23	105.98	73.07	110.65	103.1	89.22	73.93	87.11	57.46
Merged-chr15-34239679-1	chr15	34239179	34240179	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033521, intron 1 of 6)	intron (NM_033521, intron 1 of 6)	1653.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	4.0	3.23	1.85	8.1	4.2	4.82	6.34	2.21	2.5
Merged-chr14-64667178-1	chr14	64666678	64667678	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	14647.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	15.45	12.9	7.4	9.45	17.73	12.06	9.51	4.42	11.24
Merged-chr13-97474676-1	chr13	97474176	97475176	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-8025.0	NR_110430	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.58	3.23	0.92	0.0	2.33	8.84	2.11	0.88	7.49
Merged-chr4-136470744-1	chr4	136470244	136471244	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024452, intron 1 of 4)	CpG	983.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	46.91	61.28	80.47	58.03	48.98	66.71	54.92	37.14	46.84
Merged-chr2-102181649-1	chr2	102181149	102182149	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	4811.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	2.86	2.3	1.85	2.02	5.13	0.0	2.11	4.42	13.12
Merged-chr6-125494604-1	chr6	125494104	125495104	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007657, exon 1 of 8)	exon (NM_007657, exon 1 of 8)	156.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	9.15	2.3	9.25	8.1	4.67	6.43	7.39	9.29	3.75
Merged-chr7-101455193-1	chr7	101454693	101455693	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152194)	promoter-TSS (NR_152194)	-869.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.0	6.45	11.1	22.27	6.06	12.06	0.0	1.33	6.25
Merged-chr5-76486318-1	chr5	76485818	76486818	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033501, intron 1 of 2)	intron (NR_033501, intron 1 of 2)	2241.0	NR_033501	639545.0	Mm.478255	NR_033501	ENSMUSG00000091204	Gm7271	EG639545	predicted gene 7271	pseudo	2.86	3.69	0.0	4.72	2.33	0.0	1.06	2.65	3.75
Merged-chr11-87436505-1	chr11	87436005	87437005	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 2 of 30)	intron (NM_001199293, intron 2 of 30)	8914.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	30.89	32.25	35.15	19.57	27.52	22.51	71.82	66.77	24.36
Merged-chr10-121488336-1	chr10	121487836	121488836	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-12086.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	67.5	57.6	65.67	74.22	61.11	69.93	29.57	36.7	32.48
Merged-chr5-100707498-1	chr5	100706998	100707998	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_152803, intron 3 of 11)	Lx8b|LINE|L1	12218.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	10.3	15.67	13.87	4.72	4.2	2.41	4.22	4.42	0.0
Merged-chr2-59612577-2	chr2	59612096	59613096	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198294, intron 1 of 26)	CpG	554.0	NM_198294	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	34.32	33.64	20.35	59.38	45.25	36.17	63.37	41.12	15.61
Merged-chr5-115528359-1	chr5	115527859	115528859	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011223, intron 1 of 10)	intron (NM_011223, intron 1 of 10)	21683.0	NM_133915	19303.0	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	8.58	8.75	16.65	12.14	10.73	26.53	11.62	12.38	21.23
Merged-chr1-77515942-1	chr1	77515442	77516442	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007936)	promoter-TSS (NM_007936)	-854.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.29	3.69	0.0	3.37	1.87	3.22	8.45	3.1	3.75
Merged-chr2-118923023-2	chr2	118922531	118923531	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001045523, exon 7 of 7)	3' UTR (NM_001045523, exon 7 of 7)	-3466.0	NM_028117	72136.0	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	12.59	8.29	14.8	7.42	4.67	21.7	5.28	5.75	11.24
Merged-chr5-110479352-1	chr5	110478852	110479852	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30849.0	NM_001142642	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	2.86	2.76	1.85	4.72	1.87	3.22	1.06	2.21	5.0
Merged-chr7-123364559-1	chr7	123364059	123365059	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	5356.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	13.16	7.83	5.55	12.82	9.8	22.51	15.84	12.82	14.99
Merged-chr13-100453887-1	chr13	100453387	100454387	+	689.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1023.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	17.16	14.75	13.87	13.49	4.67	20.09	20.07	29.63	33.1
Merged-chr18-24152122-2	chr18	24151620	24152620	+	689.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30301.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	12.59	8.29	5.55	14.84	8.4	12.86	8.45	6.19	8.74
Merged-chr17-34969571-1	chr17	34969071	34970071	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010479, exon 1 of 1)	3' UTR (NM_010479, exon 1 of 1)	2585.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	8.01	4.15	2.77	11.47	4.67	0.0	2.11	2.65	1.25
Merged-chr1-181316800-1	chr1	181316300	181317300	+	689.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35828.0	NM_001160212	72978.0	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	4.0	1.84	3.7	0.67	1.87	0.8	3.17	0.44	2.5
Merged-chr12-102690035-2	chr12	102689540	102690540	+	688.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	-5020.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	32.04	21.2	28.67	24.29	14.93	24.11	33.8	17.24	24.98
Merged-chr17-12880340-2	chr17	12879856	12880856	+	688.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4322.0	NM_030726	80978.0	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	6.29	1.38	3.7	3.37	6.53	1.61	3.17	0.88	3.75
Merged-chr1-37555763-3	chr1	37555273	37556273	+	688.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14757.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	21.17	19.81	28.67	13.49	10.73	24.11	28.52	20.78	21.23
Merged-chr5-67404572-3	chr5	67404077	67405077	+	688.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164806, intron 3 of 4)	intron (NM_001164806, intron 3 of 4)	23222.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.43	4.15	3.7	0.67	3.73	2.41	1.06	1.33	8.74
Merged-chr2-58198710-2	chr2	58198208	58199208	+	688.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34734.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	17.73	17.97	20.35	14.17	19.13	29.74	27.46	16.8	31.23
Merged-chr10-84646777-3	chr10	84646288	84647288	+	688.857117	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027423, intron 9 of 27)	intron (NM_027423, intron 9 of 27)	24351.0	NM_027423	70428.0	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	43.48	32.25	40.7	26.99	33.12	52.25	33.8	44.22	27.48
Merged-chr5-150178398-2	chr5	150177894	150178894	+	688.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81536.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	4.0	2.76	1.85	5.4	3.27	1.61	6.34	2.21	13.12
Merged-chr16-76321696-2	chr16	76321210	76322210	+	688.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	51339.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	15.45	33.18	14.8	4.72	17.26	15.27	20.07	30.07	8.12
Merged-chr14-76674117-3	chr14	76673595	76674595	+	688.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3473.0	NR_015485	73272.0	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	1.14	2.3	0.0	3.37	5.6	0.0	1.06	2.21	1.25
Merged-chrX-103521437-3	chrX	103520944	103521944	+	688.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NR_033398	668415.0	Mm.483779	NR_033398		Gm9159	EG668415	predicted gene 9159	pseudo	18.31	30.41	19.42	11.47	23.79	20.09	26.4	17.69	14.99
Merged-chr12-38781115-3	chr12	38780634	38781634	+	688.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347379, intron 2 of 11)	intron (NM_001347379, intron 2 of 11)	1052.0	NM_007960	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	87.52	96.76	81.4	72.87	78.37	68.32	64.43	82.69	63.08
Merged-chr19-3688681-2	chr19	3688185	3689185	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2121.0	NM_008513	16973.0	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	21.17	24.42	60.12	26.99	21.93	61.09	35.91	49.08	28.73
Merged-chr17-71311875-1	chr17	71311375	71312375	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357336)	promoter-TSS (NM_001357336)	-319.0	NM_001357336	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	31.46	20.27	9.25	33.74	20.99	32.96	23.24	19.9	7.49
Merged-chr18-12796138-2	chr18	12795636	12796636	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 3 of 13)	Lx7|LINE|L1	23771.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	8.58	7.83	3.7	4.05	6.06	6.43	2.11	5.75	3.75
Merged-chr6-34690981-2	chr6	34690468	34691468	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347100, intron 3 of 13)	URR1A|DNA|hAT-Charlie	-18476.0	NM_145575	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.58	7.83	0.0	12.82	9.33	8.84	36.97	45.99	36.85
Merged-chrX-101260678-2	chrX	101260191	101261191	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033362)	TTS (NM_001033362)	3301.0	NM_001033362	245536.0	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	19.45	22.12	38.85	12.82	21.93	32.15	28.52	28.74	11.87
Merged-chr13-60698190-2	chr13	60697688	60698688	+	688.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	L1M5|LINE|L1	88176.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.44	11.98	13.87	6.07	4.2	24.11	11.62	7.07	9.37
Merged-chr4-101716827-2	chr4	101716327	101717327	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122899)	promoter-TSS (NM_001122899)	-580.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.57	4.15	0.0	4.72	9.8	10.45	0.0	0.44	5.0
Merged-chr8-83158614-2	chr8	83158124	83159124	+	688.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6728.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	18.31	20.27	28.67	35.09	17.73	12.86	27.46	20.34	23.11
Merged-chrX-133610659-3	chrX	133610165	133611165	+	688.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001105245, intron 5 of 5)	intron (NM_001105245, intron 5 of 5)	-77115.0	NR_153117	102632590.0	Mm.403836	NR_153117	ENSMUSG00000096978	Gm26851	-	predicted gene, 26851	ncRNA	1.72	5.07	5.55	2.7	6.53	6.43	3.17	3.1	4.37
Merged-chr3-95954391-3	chr3	95953883	95954883	+	688.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25126.0	NM_023210	66471.0	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	37.76	32.72	15.72	43.18	34.06	31.35	43.3	29.63	18.11
Merged-chr3-100419352-3	chr3	100418864	100419864	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7041.0	NR_040543	73806.0	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	4.58	2.3	5.55	3.37	4.67	1.61	5.28	4.86	4.37
Merged-chrX-96117573-1	chrX	96117073	96118073	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	21528.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	9.72	8.29	17.57	14.84	8.86	17.68	19.01	15.03	12.49
Merged-chr7-88185304-1	chr7	88184804	88185804	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92781.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	14.3	17.51	18.5	23.62	16.33	19.29	27.46	9.29	12.49
Merged-chr17-31297835-3	chr17	31297303	31298303	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242427, intron 1 of 19)	intron (NM_001242427, intron 1 of 19)	1579.0	NM_001242427	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	11.44	16.13	11.1	20.92	16.79	4.02	25.35	19.46	9.99
Merged-chr15-95768954-3	chr15	95768471	95769471	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17380.0	NR_131148	629300.0	Mm.247258	NR_131148	ENSMUSG00000115699	Gm6961	EG629300	predicted gene 6961	ncRNA	5.72	3.69	3.7	8.1	3.73	1.61	1.06	1.77	1.25
Merged-chr16-94371605-3	chr16	94371091	94372091	+	688.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019543)	promoter-TSS (NM_019543)	-576.0	NM_001159617	56176.0	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	54.35	36.86	24.97	42.51	32.66	30.54	49.64	37.58	14.99
Merged-chr15-80034520-1	chr15	80034020	80035020	+	688.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19712.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	80.66	83.4	85.1	70.17	65.31	89.22	122.52	119.83	86.81
Merged-chr15-25834647-1	chr15	25834147	25835147	+	688.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8651.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	9.15	6.91	0.92	12.82	9.33	12.06	13.73	7.52	9.37
Merged-chr1-134202259-2	chr1	134201776	134202776	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001291930, exon 2 of 2)	3' UTR (NM_001291930, exon 2 of 2)	8828.0	NM_016749	53311.0	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	2.86	2.76	0.0	0.0	1.87	3.22	2.11	0.44	2.5
Merged-chr13-31801391-2	chr13	31800900	31801900	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5246.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	1.72	0.46	3.7	3.37	4.2	1.61	2.11	0.88	3.75
Merged-chr1-127781072-2	chr1	127780562	127781562	+	688.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028399, intron 2 of 8)	MIRb|SINE|MIR	6898.0	NM_028399	72949.0	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	12.01	15.21	7.4	15.52	14.0	8.84	17.96	20.34	18.74
Merged-chr6-54078396-2	chr6	54077889	54078889	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	38457.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	10.3	9.22	3.7	8.77	7.0	6.43	11.62	10.61	9.37
Merged-chr6-34754676-2	chr6	34754184	34755184	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145575, intron 4 of 11)	intron (NM_145575, intron 4 of 11)	-25748.0	NM_001289658	76223.0	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	6.86	2.3	4.62	2.7	3.27	3.22	3.17	0.88	1.25
Merged-chr15-82138736-2	chr15	82138248	82139248	+	688.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137170, intron 5 of 5)	intron (NR_137170, intron 5 of 5)	-8521.0	NM_033218	20788.0	Mm.38016	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	5.15	4.61	3.7	4.05	2.8	3.22	7.39	3.1	7.49
Merged-chr6-134259764-2	chr6	134259275	134260275	+	688.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-136554.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	10.87	10.14	14.8	12.82	5.13	17.68	7.39	9.73	11.87
Merged-chr13-12589192-2	chr13	12588705	12589705	+	688.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026184, intron 6 of 15)	B3|SINE|B2	23322.0	NM_026184	67475.0	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	2.29	2.76	0.0	2.02	2.8	1.61	3.17	2.65	3.75
Merged-chr16-84735975-3	chr16	84735474	84736474	+	688.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017404)	promoter-TSS (NM_017404)	-672.0	NM_017404	27393.0	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	25.17	17.97	23.12	17.54	11.66	15.27	29.57	30.07	24.36
Merged-chr15-76247381-3	chr15	76246899	76247899	+	688.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	592.0	NM_023168	66168.0	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	99.54	78.33	82.32	115.38	76.51	109.32	134.14	97.72	53.08
Merged-chr13-95893065-3	chr13	95892569	95893569	+	688.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	19.45	23.5	8.32	28.34	16.79	18.49	41.19	26.53	13.74
Merged-chr13-112769966-1	chr13	112769466	112770466	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-30811.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	1.14	1.84	3.7	3.37	3.27	1.61	1.06	1.33	0.0
Merged-chr6-58990609-1	chr6	58990109	58991109	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153574, intron 2 of 17)	intron (NM_153574, intron 2 of 17)	33893.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	14.3	4.61	5.55	12.14	11.2	8.04	8.45	14.15	11.87
Merged-chr1-166149569-1	chr1	166149069	166150069	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021610, intron 2 of 6)	intron (NM_021610, intron 2 of 6)	19348.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	5.72	2.3	1.85	4.72	3.27	4.02	5.28	2.65	0.0
Merged-chr2-154902309-1	chr2	154901809	154902809	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9403.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	1.72	2.3	1.85	9.45	10.26	9.65	3.17	8.84	4.37
Merged-chr2-148682303-3	chr2	148681803	148682803	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355689, intron 1 of 5)	intron (NM_001355689, intron 1 of 5)	1183.0	NM_028986	74533.0	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	44.62	45.16	29.6	35.09	28.46	31.35	39.08	41.56	36.85
Merged-chr12-55506140-2	chr12	55505648	55506648	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13501.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	4.0	1.84	5.55	0.0	0.47	4.02	2.11	2.21	0.0
Merged-chr6-51557448-1	chr6	51556948	51557948	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361577, intron 1 of 6)	ORR1A3|LTR|ERVL-MaLR	12155.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	39.47	46.54	66.6	31.04	27.06	29.74	40.14	30.95	43.72
Merged-chr3-19411357-1	chr3	19410857	19411857	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97238.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	14.3	20.74	24.05	11.47	19.13	13.66	11.62	7.07	6.25
Merged-chr15-91180819-1	chr15	91180319	91181319	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 3 of 9)	MTD|LTR|ERVL-MaLR	11188.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	17.73	37.78	31.45	48.58	35.92	54.66	64.43	46.87	30.6
Merged-chr2-161177902-1	chr2	161177402	161178402	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68816.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	4.58	3.23	5.55	10.12	13.53	5.63	6.34	2.65	5.62
Merged-chr14-63196053-2	chr14	63195560	63196560	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2535.0	NM_201610	382913.0	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	12.01	6.45	5.55	4.05	1.87	9.65	3.17	2.21	1.25
Merged-chr1-130918749-1	chr1	130918249	130919249	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7453.0	NM_021380	58181.0	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	5.72	5.07	11.1	5.4	7.0	3.22	6.34	4.42	3.12
Merged-chrX-48256186-1	chrX	48255686	48256686	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028276)	promoter-TSS (NM_028276)	-748.0	NM_028276	72554.0	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	53.77	57.6	45.32	51.95	70.91	40.19	81.33	83.13	50.59
Merged-chr18-69588611-3	chr18	69588106	69589106	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	242446.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	13.16	9.22	11.1	4.72	4.2	11.25	10.56	5.75	3.75
Merged-chr8-75106621-2	chr8	75106183	75107183	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-2826.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	11.44	5.99	0.0	1.35	2.8	5.63	1.06	3.54	11.87
Merged-chr10-18917207-2	chr10	18916713	18917713	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72142.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	7.44	8.75	0.92	12.14	3.27	2.41	14.79	5.75	8.74
Merged-chr7-48913066-1	chr7	48912566	48913566	+	688.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-31470.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.15	2.3	7.4	6.07	2.33	6.43	0.0	3.54	0.0
Merged-chr1-143998814-4	chr1	143998357	143999357	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009061)	TTS (NM_009061)	5292.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	21.74	15.67	24.97	15.52	9.33	6.43	10.56	11.05	11.24
Merged-chr15-100129381-2	chr15	100128888	100129888	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-25008.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	44.62	43.31	24.05	60.72	41.52	15.27	50.7	51.29	27.48
Merged-chr16-24712383-2	chr16	24711891	24712891	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	intron (NM_178665, intron 7 of 12)	-9464.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.72	8.29	12.95	9.45	10.73	7.23	8.45	8.84	14.99
Merged-chr12-85395876-2	chr12	85395380	85396380	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21163.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	116.7	89.85	110.99	128.2	93.3	106.9	102.45	87.55	76.19
Merged-chr7-127111664-3	chr7	127111159	127112159	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	10370.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	6.86	4.15	3.7	5.4	0.93	3.22	6.34	0.88	1.87
Merged-chr15-34054918-1	chr15	34054418	34055418	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27801.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	3.43	6.45	11.1	7.42	9.33	13.66	10.56	7.07	11.24
Merged-chr14-76073331-2	chr14	76072831	76073831	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	37484.0	NM_026177	67467.0	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	13.16	14.75	7.4	17.54	12.6	22.51	38.02	46.43	29.35
Merged-chr1-45905303-2	chr1	45904814	45905814	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20280.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	41.76	54.83	77.7	31.04	24.26	58.68	34.85	30.51	25.61
Merged-chr18-61068595-1	chr18	61068095	61069095	+	688.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008809, intron 9 of 22)	intron (NM_008809, intron 9 of 22)	23445.0	NM_008809	18596.0	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	5.15	0.92	12.95	6.07	2.8	2.41	2.11	5.31	2.5
Merged-chr4-129419196-1	chr4	129418696	129419696	+	688.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	21622.0	NM_153541	215627.0	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	5.72	9.22	0.92	4.05	5.6	0.0	4.22	8.84	5.0
Merged-chr17-35025176-3	chr17	35024607	35025607	+	688.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023893)	TTS (NM_023893)	2909.0	NR_028258	78376.0	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	12.59	3.23	1.85	3.37	7.0	8.04	10.56	3.54	6.25
Merged-chr1-86363902-2	chr1	86363403	86364403	+	688.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015507, intron 1 of 1)	B2_Mm2|SINE|B2	4329.0	NR_015507	319336.0	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	-	RIKEN cDNA C130036L24 gene	ncRNA	0.0	1.84	0.0	9.45	4.2	0.8	4.22	1.33	1.87
Merged-chr17-36064776-1	chr17	36064276	36065276	+	688.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6405.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	0.0	1.38	0.0	6.75	6.06	4.82	2.11	1.33	2.5
Merged-chr4-149543333-3	chr4	149542831	149543831	+	688.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-1786.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	4.58	1.38	0.0	4.05	2.33	4.82	3.17	1.33	2.5
Merged-chr8-94186827-2	chr8	94186321	94187321	+	688.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7732.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	15.45	7.83	3.7	16.19	11.2	12.06	11.62	9.29	4.37
Merged-chr8-108574295-2	chr8	108573797	108574797	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	10380.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.86	6.45	0.0	2.7	3.27	1.61	1.06	1.77	1.25
Merged-chr13-58542982-2	chr13	58542478	58543478	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67899.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	18.31	9.22	14.8	29.69	13.06	16.08	27.46	31.84	6.87
Merged-chr11-117139290-2	chr11	117138798	117139798	+	688.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 2 of 16)	intron (NM_001166507, intron 2 of 16)	24126.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	45.19	16.59	12.95	43.86	27.52	14.47	21.12	16.36	7.49
Merged-chr10-94966923-3	chr10	94966438	94967438	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22360.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	10.3	5.99	11.1	20.92	8.86	7.23	13.73	5.31	9.99
Merged-chr10-98878849-1	chr10	98878349	98879349	+	688.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35793.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	206.51	211.04	108.22	195.67	135.29	135.04	132.02	179.52	106.79
Merged-chr7-100855417-3	chr7	100854899	100855899	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	8014.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	68.07	60.36	62.9	53.98	39.65	65.11	41.19	47.31	47.46
Merged-chr5-114781073-3	chr5	114780572	114781572	+	688.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026718, intron 1 of 14)	intron (NM_026718, intron 1 of 14)	5932.0	NM_026718	68420.0	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	11.44	5.99	7.4	12.82	10.26	9.65	12.67	2.65	9.37
Merged-chr17-64375526-3	chr17	64374999	64375999	+	688.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43616.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	1.72	1.38	7.4	1.35	2.8	1.61	5.28	0.88	1.87
Merged-chr10-41826704-3	chr10	41826209	41827209	+	688.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	16135.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	8.58	3.69	5.55	6.07	3.73	4.82	4.22	5.75	3.12
Merged-chr10-96464787-3	chr10	96464256	96465256	+	688.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-152245.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	24.03	14.28	18.5	14.17	9.8	11.25	24.29	13.27	18.74
Merged-chr14-70096507-2	chr14	70095968	70096968	+	688.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3625.0	NM_021328	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	10.3	3.23	1.85	6.07	3.73	2.41	2.11	0.88	1.25
Merged-chr9-119246695-2	chr9	119246201	119247201	+	688.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359582, intron 14 of 18)	intron (NM_001359582, intron 14 of 18)	-15009.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	11.44	20.74	16.65	33.74	20.06	36.17	17.96	14.59	17.49
Merged-chr10-44149054-1	chr10	44148554	44149554	+	688.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21393.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	6.86	0.46	0.0	4.05	1.4	3.22	3.17	0.44	1.25
Merged-chr14-9555776-6	chr14	9555286	9556286	+	688.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 9 of 9)	intron (NM_001360141, intron 9 of 9)	-328309.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	9.15	8.29	5.55	11.47	7.46	8.04	7.39	9.73	3.75
Merged-chr2-117197234-2	chr2	117196747	117197747	+	688.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12120.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	9.15	12.9	14.8	12.14	4.67	4.82	6.34	2.65	3.75
Merged-chr3-109008375-3	chr3	109007873	109008873	+	688.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163567, intron 1 of 10)	intron (NM_001163567, intron 1 of 10)	19234.0	NM_001163567	329739.0	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	6.29	6.91	0.0	7.42	7.93	8.04	6.34	3.98	2.5
Merged-chr5-3787728-2	chr5	3787223	3788223	+	688.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003909, intron 1 of 19)	MER68-int|LTR|ERVL	-14936.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	7.44	5.07	9.25	13.49	5.13	8.04	4.22	2.65	8.12
Merged-chr6-124911770-2	chr6	124911283	124912283	+	688.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008479)	promoter-TSS (NM_008479)	-78.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	13.16	5.53	3.7	7.42	7.0	2.41	3.17	4.86	3.12
Merged-chr1-165624781-2	chr1	165624300	165625300	+	688.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	B3|SINE|B2	9741.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	18.31	11.52	16.65	19.57	11.2	3.22	13.73	6.63	10.62
Merged-chr8-34180086-2	chr8	34179588	34180588	+	688.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13376.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	4.58	1.84	0.0	4.72	2.33	4.82	5.28	3.98	2.5
Merged-chr7-116031986-3	chr7	116031516	116032516	+	688.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152104)	promoter-TSS (NR_152104)	37.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	6.29	2.76	1.85	2.02	2.33	3.22	3.17	0.0	2.5
Merged-chr11-117790458-3	chr11	117789948	117790948	+	688.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195090, intron 10 of 15)	intron (NM_001195090, intron 10 of 15)	-7212.0	NM_029964	77727.0	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	Il-40	RIKEN cDNA 6030468B19 gene	protein-coding	11.44	2.3	0.92	4.05	5.13	8.04	7.39	1.33	6.87
Merged-chr10-117144267-1	chr10	117143767	117144767	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	RSINE1|SINE|B4	4207.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	18.88	21.66	18.5	26.31	22.39	14.47	14.79	17.24	14.99
Merged-chr9-5311494-1	chr9	5310994	5311994	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007609, intron 1 of 8)	RLTR17|LTR|ERVK	2645.0	NM_007609	12363.0	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	20.59	25.34	11.1	23.62	22.39	22.51	20.07	18.57	7.49
Merged-chr17-27119370-1	chr17	27118870	27119870	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_080553, exon 55 of 58)	exon (NM_080553, exon 55 of 58)	14521.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	5.15	5.07	1.85	2.7	0.93	4.82	3.17	1.33	3.12
Merged-chr1-77832004-1	chr1	77831504	77832504	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-316916.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	34.32	31.79	14.8	37.78	30.32	32.15	39.08	35.82	28.1
Merged-chr7-109562420-1	chr7	109561920	109562920	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001326, intron 2 of 19)	intron (NM_001001326, intron 2 of 19)	42288.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	12.59	22.58	14.8	26.99	22.39	17.68	29.57	15.03	22.48
Merged-chr2-57407775-1	chr2	57407275	57408275	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169393.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	4.0	2.76	0.0	2.7	3.73	1.61	3.17	8.4	0.0
Merged-chr7-110718731-1	chr7	110718231	110719231	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49475.0	NM_001276301	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.0	0.46	0.0	6.75	3.73	1.61	5.28	1.77	1.25
Merged-chr2-74578339-1	chr2	74577839	74578839	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110209, intron 1 of 13)	intron (NM_001110209, intron 1 of 13)	609.0	NM_001110209	69605.0	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	11.44	11.52	8.32	14.17	13.53	14.47	21.12	15.92	14.36
Merged-chr7-109865730-1	chr7	109865230	109866230	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020052)	promoter-TSS (NM_020052)	-51.0	NM_020052	56788.0	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	4.58	0.0	4.62	3.37	0.47	1.61	2.11	0.0	0.0
Merged-chr1-55792999-1	chr1	55792499	55793499	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138242.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	4.0	3.69	3.7	4.05	3.27	8.04	7.39	7.96	6.25
Merged-chr3-126598152-1	chr3	126597652	126598652	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 1 of 18)	intron (NM_001025438, intron 1 of 18)	1201.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	81.23	94.46	55.5	77.59	82.57	74.75	115.12	119.83	67.45
Merged-chr2-132114204-2	chr2	132113711	132114711	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355430, intron 1 of 15)	(CAAAAA)n|Simple_repeat|Simple_repeat	30897.0	NM_001355431	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	109.26	140.54	68.45	101.21	94.7	69.13	123.57	182.17	84.94
Merged-chr6-73711724-1	chr6	73711224	73712224	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-240703.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	5.72	3.23	7.4	9.45	8.4	12.06	11.62	7.07	5.62
Merged-chr6-52442254-2	chr6	52441752	52442752	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50199.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.72	3.69	1.85	6.75	7.0	6.43	6.34	0.88	8.12
Merged-chr12-111426642-1	chr12	111426142	111427142	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289487, intron 9 of 13)	intron (NM_001289487, intron 9 of 13)	9197.0	NM_001289488	74190.0	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	15.45	10.6	5.55	18.89	4.67	5.63	12.67	8.4	6.87
Merged-chr15-3259742-1	chr15	3259242	3260242	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11025.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	9.72	6.91	9.25	12.82	9.8	23.31	6.34	7.07	9.99
Merged-chr12-36041217-1	chr12	36040717	36041717	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	intron (NM_025359, intron 1 of 5)	1261.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	48.05	61.28	36.07	73.54	73.71	53.85	5.28	8.4	1.25
Merged-chr5-91308118-2	chr5	91307622	91308622	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25046.0	NR_040428	100503265.0	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	6.29	3.23	3.7	3.37	2.33	5.63	2.11	2.65	1.25
Merged-chr3-136761802-3	chr3	136761303	136762303	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	91737.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	6.29	7.83	9.25	7.42	6.06	4.02	9.51	5.31	7.49
Merged-chr5-64312184-1	chr5	64311684	64312684	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 12 of 18)	intron (NM_001289514, intron 12 of 18)	81827.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.44	3.23	9.25	6.75	7.46	17.68	10.56	5.31	11.87
Merged-chr2-11475188-1	chr2	11474688	11475688	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177752, intron 13 of 13)	intron (NM_001177752, intron 13 of 13)	26902.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.15	4.15	12.95	6.07	6.53	16.08	7.39	3.54	5.0
Merged-chr9-60848939-1	chr9	60848439	60849439	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 4 of 19)	intron (NM_001357408, intron 4 of 19)	54497.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	2.29	1.38	4.62	10.8	7.0	4.82	7.39	0.44	3.75
Merged-chr14-33371385-1	chr14	33370885	33371885	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39639.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.0	1.84	3.7	3.37	1.4	3.22	0.0	0.0	2.5
Merged-chr9-3004771-2	chr9	3004236	3005236	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	34007.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	16.02	63.13	3.7	20.92	78.37	4.82	36.97	25.65	10.62
Merged-chr14-34363313-1	chr14	34362813	34363813	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7920.0	NM_183278	69134.0	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	9.15	1.84	0.92	6.75	2.8	5.63	7.39	1.33	3.75
Merged-chr6-113664493-1	chr6	113663993	113664993	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 2 of 11)	intron (NM_001113553, intron 2 of 11)	26026.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	51.48	29.49	32.37	56.0	30.79	55.46	38.02	29.63	38.72
Merged-chr8-56076020-1	chr8	56075520	56076520	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	135195.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	11.44	13.82	12.95	6.07	6.06	11.25	13.73	9.73	13.74
Merged-chr17-30575359-1	chr17	30574859	30575859	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172618, intron 1 of 11)	intron (NM_172618, intron 1 of 11)	928.0	NM_172618	224671.0	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	157.31	243.29	217.36	45.88	61.11	79.58	183.78	233.02	144.89
Merged-chr16-55777005-1	chr16	55776505	55777505	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	45133.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	14.3	8.29	1.85	15.52	4.67	0.0	10.56	5.75	9.99
Merged-chr10-68126223-3	chr10	68125759	68126759	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 7 of 9)	intron (NM_023598, intron 7 of 9)	146689.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	44.05	34.1	26.82	53.98	47.58	31.35	61.26	44.66	41.22
Merged-chr1-135766396-2	chr1	135765869	135766869	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013750, exon 1 of 2)	5' UTR (NM_013750, exon 1 of 2)	284.0	NM_013750	27280.0	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	8.01	3.69	7.4	2.7	4.67	3.22	5.28	0.0	7.49
Merged-chr4-11454546-1	chr4	11454046	11455046	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31412.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	49.2	72.34	34.22	41.16	50.38	34.56	88.72	102.58	34.35
Merged-chr10-82866094-1	chr10	82865594	82866594	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025499)	promoter-TSS (NM_025499)	-532.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	6.86	8.29	5.55	14.17	8.86	14.47	32.74	30.95	9.99
Merged-chr10-96627557-1	chr10	96627057	96628057	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10556.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	9.15	1.84	2.77	2.02	5.6	1.61	1.06	0.0	3.75
Merged-chr7-114439943-2	chr7	114439449	114440449	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011055, intron 1 of 15)	intron (NM_011055, intron 1 of 15)	24695.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	14.87	14.28	11.1	16.87	20.99	19.29	20.07	12.82	14.99
Merged-chr10-98916392-3	chr10	98915845	98916845	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	1193.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	121.85	169.11	83.25	112.68	109.63	90.83	133.08	129.55	73.69
Merged-chr7-89441300-2	chr7	89440799	89441799	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14993.0	NR_102276	101521.0	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	4.58	4.15	5.55	4.05	3.73	7.23	2.11	3.98	7.49
Merged-chr7-126630126-2	chr7	126629613	126630613	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4643.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	7.44	5.07	5.55	7.42	7.93	15.27	11.62	9.73	5.0
Merged-chr11-62458064-1	chr11	62457564	62458564	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177229)	promoter-TSS (NM_177229)	-396.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	374.7	444.2	290.44	344.11	402.6	300.62	382.34	438.63	202.35
Merged-chr7-102142189-1	chr7	102141689	102142689	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287164, intron 20 of 32)	intron (NM_001287164, intron 20 of 32)	-25476.0	NM_001081424	504186.0	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	11.44	11.06	19.42	15.52	7.0	16.88	7.39	11.05	7.49
Merged-chr11-115766197-1	chr11	115765697	115766697	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028014, intron 1 of 31)	intron (NM_028014, intron 1 of 31)	764.0	NM_028014	71947.0	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	41.19	34.56	42.55	39.13	35.92	73.95	22.18	34.05	20.61
Merged-chr3-59175001-1	chr3	59174501	59175501	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	20103.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	21.74	30.87	41.62	9.45	7.46	12.86	4.22	6.63	6.25
Merged-chr10-84055913-1	chr10	84055413	84056413	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152790, intron 2 of 4)	intron (NR_152790, intron 2 of 4)	44784.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	4.0	7.37	1.85	2.7	1.4	5.63	12.67	2.65	1.25
Merged-chr1-180331044-1	chr1	180330544	180331544	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_003623)	promoter-TSS (NR_003623)	-495.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	83.52	104.6	98.97	76.24	64.84	126.19	102.45	91.53	74.94
Merged-chr11-95704251-1	chr11	95703751	95704751	+	688.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045780, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	8503.0	NR_045780	432396.0	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	13.16	4.15	0.0	7.42	0.93	1.61	2.11	1.33	1.87
Merged-chr17-42387865-1	chr17	42387365	42388365	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	URR1A|DNA|hAT-Charlie	71265.0	NM_001355270	627626.0	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.0	5.07	0.0	0.0	2.8	4.82	3.17	4.42	3.75
Merged-chr5-148548777-1	chr5	148548277	148549277	+	688.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	2896.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	83.52	72.8	48.1	64.77	43.85	64.3	108.79	128.23	66.82
Merged-chr12-111166808-1	chr12	111166308	111167308	+	688.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001286122, intron 1 of 9)	CpG	438.0	NM_011632	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	168.76	136.85	75.85	172.73	122.23	86.01	154.2	118.06	59.33
Merged-chr6-29828998-3	chr6	29828515	29829515	+	687.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	-24726.0	NM_001347084	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	16.02	8.29	3.7	19.57	11.66	8.04	9.51	17.69	5.62
Merged-chr17-8051387-3	chr17	8050891	8051891	+	687.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033442, intron 2 of 3).2	intron (NM_001033442, intron 2 of 3).2	49837.0	NM_001033442	381059.0	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	Gm1604	predicted gene 1604b	protein-coding	1.14	0.92	1.85	0.0	0.0	3.22	0.0	0.0	0.0
Merged-chr15-99715056-3	chr15	99714552	99715552	+	687.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_155353)	TTS (NR_155353)	-2541.0	NM_010271	14555.0	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	2.29	2.3	9.25	2.7	6.06	4.82	3.17	3.54	1.87
Merged-chr19-44750898-2	chr19	44750395	44751395	+	687.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6499.0	NM_011037	18504.0	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	5.15	1.84	0.0	3.37	0.93	2.41	1.06	3.1	3.75
Merged-chr17-51177718-2	chr17	51177184	51178184	+	687.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 1 of 21)	intron (NM_028162, intron 1 of 21)	1668.0	NM_028162	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	72.65	102.29	74.0	88.39	66.71	74.75	106.67	92.41	68.7
Merged-chr1-172357644-2	chr1	172357119	172358119	+	687.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	16409.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	9.15	6.45	13.87	14.84	5.6	11.25	6.34	6.19	6.25
Merged-chr19-32646174-3	chr19	32645663	32646663	+	687.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360403, intron 7 of 11)	intron (NM_001360403, intron 7 of 11)	26158.0	NM_011864	23972.0	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	18.31	11.06	4.62	16.87	17.73	12.86	27.46	22.55	14.36
Merged-chr1-177261508-2	chr1	177261018	177262018	+	687.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-12751.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	43.48	61.28	53.65	68.82	57.38	65.11	44.36	53.94	43.72
Merged-chr10-95867748-1	chr10	95867248	95868248	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie18a|DNA|hAT-Charlie	-72915.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	4.0	9.68	6.47	5.4	7.0	13.66	8.45	7.07	5.0
Merged-chr2-158768596-2	chr2	158768096	158769096	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027975, intron 1 of 3)	CpG	497.0	NM_027975	71878.0	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	14.87	8.29	11.1	13.49	9.8	1.61	14.79	13.71	8.74
Merged-chr16-27296734-2	chr16	27296238	27297238	+	687.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10903.0	NM_198112	239790.0	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	10.87	11.52	18.5	9.45	9.33	9.65	10.56	6.19	6.25
Merged-chrX-169159699-2	chrX	169159177	169160177	+	687.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	L2a|LINE|L2	27532.0	NM_001290371	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	2.86	5.07	1.85	4.05	8.86	12.86	3.17	0.0	5.0
Merged-chr8-22895811-3	chr8	22895318	22896318	+	687.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081149, intron 3 of 17)	intron (NM_001081149, intron 3 of 17)	36279.0	NM_001081149	244349.0	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	17.73	13.36	18.5	21.59	12.6	21.7	27.46	23.88	18.74
Merged-chr10-93680872-1	chr10	93680372	93681372	+	687.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038017, intron 1 of 5)	intron (NR_038017, intron 1 of 5)	2450.0	NR_038017	100504069.0	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	-	predicted gene 15915	ncRNA	1.14	0.46	1.85	10.12	4.67	1.61	1.06	2.21	3.75
Merged-chr11-60219842-2	chr11	60219349	60220349	+	687.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	778.0	NM_011480	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	78.94	86.17	42.55	126.17	119.43	77.97	140.47	135.3	59.95
Merged-chr14-65347178-2	chr14	65346667	65347667	+	687.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-11509.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	14.3	11.52	10.17	25.64	9.33	17.68	6.34	9.73	8.74
Merged-chr18-55398485-2	chr18	55397992	55398992	+	687.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34|LTR|ERV1	-405901.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	7.44	8.75	1.85	22.27	11.66	11.25	12.67	3.54	7.49
Merged-chr14-115041522-3	chr14	115041019	115042019	+	687.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2152.0	NR_029785	723905.0		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	42.33	14.75	41.62	41.16	9.8	32.96	49.64	12.38	19.98
Merged-chr17-49935987-2	chr17	49935475	49936475	+	687.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	254522.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.0	1.84	3.7	2.02	1.4	0.0	1.06	0.44	3.75
Merged-chr1-133660852-2	chr1	133660338	133661338	+	687.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166552)	promoter-TSS (NM_001166552)	47.0	NM_001166552	667118.0	Mm.245357	NM_001166552	ENSMUSG00000102049	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	167.61	173.72	147.99	153.84	153.48	122.18	167.93	137.96	66.2
Merged-chr15-64260260-3	chr15	64259765	64260765	+	687.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	RMER1B|Other|Other	52408.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	9.72	5.99	14.8	6.75	5.6	6.43	9.51	5.75	2.5
Merged-chr15-64447430-3	chr15	64446936	64447936	+	687.511108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-64517.0	NM_010026	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	10.3	6.45	5.55	11.47	4.67	4.82	7.39	6.19	3.75
Merged-chr7-113208262-3	chr7	113207752	113208752	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357070, intron 1 of 19)	CpG	787.0	NM_007489	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	40.62	30.41	16.65	19.57	24.26	32.15	22.18	24.76	23.73
Merged-chr5-36485421-2	chr5	36484928	36485928	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025725, exon 1 of 1)	exon (NM_025725, exon 1 of 1)	840.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	10.87	6.45	5.55	12.14	12.13	11.25	9.51	6.63	7.49
Merged-chr5-90324331-2	chr5	90323859	90324859	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	B1_Mur1|SINE|Alu	41826.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	9.15	17.97	29.6	12.14	8.86	7.23	27.46	18.57	24.98
Merged-chr1-87201640-1	chr1	87201140	87202140	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4171.0	NM_009604	11449.0	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	4.58	2.76	1.85	5.4	6.06	3.22	4.22	0.0	2.5
Merged-chrX-160751012-1	chrX	160750512	160751512	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17001.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	5.72	0.92	0.0	2.02	2.33	0.0	4.22	8.84	1.25
Merged-chr9-63609018-1	chr9	63608518	63609518	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	6372.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	28.6	29.49	42.55	35.76	37.79	18.49	47.53	36.7	21.86
Merged-chr1-36737491-2	chr1	36736992	36737992	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040290, intron 5 of 8)	intron (NR_040290, intron 5 of 8)	22954.0	NR_040290	71166.0	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	4.0	4.15	9.25	5.4	5.13	6.43	4.22	1.33	5.0
Merged-chr14-122465696-1	chr14	122465196	122466196	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022987)	promoter-TSS (NM_022987)	-38.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	5.15	3.69	7.4	4.72	0.47	2.41	2.11	2.21	1.25
Merged-chr16-7455802-1	chr16	7455302	7456302	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	385967.0	NM_183188	268859.0	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	4.58	2.3	9.25	9.45	4.67	5.63	0.0	2.65	2.5
Merged-chr12-40205577-2	chr12	40205092	40206092	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013562, intron 9 of 11)	B4|SINE|B4	-6277.0	NM_001033437	380755.0	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	7.44	7.83	9.25	6.75	3.73	11.25	7.39	4.42	10.62
Merged-chr7-101845337-1	chr7	101844837	101845837	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303231)	promoter-TSS (NM_001303231)	-6.0	NM_008035	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	21.17	25.34	22.2	29.69	20.06	26.53	36.97	30.95	26.85
Merged-chr17-34685879-3	chr17	34685391	34686391	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031176, intron 8 of 32)	intron (NM_031176, intron 8 of 32)	15356.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	5.72	1.38	5.55	3.37	1.4	2.41	6.34	1.33	3.75
Merged-chr7-68144463-1	chr7	68143963	68144963	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	119770.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	5.72	4.61	5.55	12.14	6.53	5.63	6.34	3.98	3.75
Merged-chr15-76787456-1	chr15	76786956	76787956	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	30714.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	21.17	22.58	16.65	18.89	16.33	22.51	3.17	1.33	1.87
Merged-chr2-93646091-2	chr2	93645596	93646596	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007442, intron 1 of 3)	CpG	3662.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.29	1.38	0.0	2.7	0.47	3.22	1.06	3.54	1.25
Merged-chr16-49817050-2	chr16	49816551	49817551	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-38603.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	18.31	14.75	22.2	20.92	11.66	32.15	22.18	17.24	19.98
Merged-chrX-134913386-2	chrX	134912897	134913897	+	687.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50500.0	NM_001289736	83454.0	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	8.58	6.45	7.4	14.84	5.13	4.82	4.22	8.4	2.5
Merged-chr14-63424932-1	chr14	63424432	63425432	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7745.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	5.15	2.3	1.85	6.07	4.2	6.43	6.34	4.42	1.25
Merged-chr1-139263336-1	chr1	139262836	139263836	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133239, intron 5 of 11)	intron (NM_133239, intron 5 of 11)	113740.0	NM_133239	170788.0	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	5.15	10.6	12.95	11.47	3.27	8.84	17.96	9.73	8.74
Merged-chr17-87539738-1	chr17	87539238	87540238	+	687.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR25B|LTR|ERVK	-92803.0	NM_007589	12314.0	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017|Cam2|CamC	calmodulin 2	protein-coding	17.73	13.82	25.9	34.41	34.99	15.27	5.28	5.31	6.25
Merged-chr7-100198837-1	chr7	100198337	100199337	+	687.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	20154.0	NM_001190871	57442.0	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	26.31	16.13	10.17	16.87	10.26	19.29	3.17	9.73	5.0
Merged-chr10-22645341-2	chr10	22644857	22645857	+	687.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178934, intron 1 of 4)	CpG	346.0	NM_178934	353169.0	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	10.3	0.92	1.85	10.8	3.27	3.22	2.11	0.0	1.25
Merged-chr6-116670361-2	chr6	116669878	116670878	+	687.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178045, intron 1 of 10)	intron (NM_178045, intron 1 of 10)	3458.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	104.69	106.44	86.02	77.59	40.59	80.38	141.53	116.73	78.69
Merged-chr5-5514384-2	chr5	5513848	5514848	+	687.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001193660, exon 2 of 5)	5' UTR (NM_001193660, exon 2 of 5)	441.0	NM_001193660	64945.0	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	12.59	3.69	1.85	2.7	4.67	4.82	11.62	0.0	5.0
Merged-chr2-126495997-1	chr2	126495497	126496497	+	687.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 1 of 27)	intron (NM_001359975, intron 1 of 27)	3850.0	NM_001359975	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	37.18	33.64	47.17	31.71	32.19	57.87	12.67	15.48	16.24
Merged-chr11-72216658-3	chr11	72216164	72217164	+	687.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163728, exon 1 of 1)	3' UTR (NM_001163728, exon 1 of 1)	-1072.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	81.8	94.46	68.45	67.47	57.85	44.21	59.15	42.45	18.74
Merged-chr18-11717919-1	chr18	11717419	11718419	+	687.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081223, intron 8 of 18)	L2|LINE|L2	60570.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	33.75	45.16	37.0	22.94	33.12	42.6	64.43	63.67	49.34
Merged-chr3-88144800-2	chr3	88144308	88145308	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	2436.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	22.31	21.66	10.17	26.99	24.72	25.72	28.52	16.36	15.61
Merged-chr12-103036875-1	chr12	103036375	103037375	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081017, intron 7 of 48)	L1MEc|LINE|L1	88016.0	NM_001081017	217843.0	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	8.01	7.37	3.7	8.1	8.4	7.23	2.11	5.31	5.62
Merged-chr13-3807132-2	chr13	3806617	3807617	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2799.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	1.72	4.15	1.85	3.37	4.67	9.65	7.39	4.42	3.75
Merged-chr2-60874111-2	chr2	60873616	60874616	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	MTD|LTR|ERVL-MaLR	7322.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	9.72	12.44	22.2	12.14	16.33	19.29	10.56	12.38	8.74
Merged-chr5-103387616-2	chr5	103387133	103388133	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37559.0	NM_011204	19249.0	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	5.15	4.61	3.7	6.07	3.73	3.22	5.28	3.98	10.62
Merged-chr8-75099971-2	chr8	75099490	75100490	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010442, exon 5 of 5)	exon (NM_010442, exon 5 of 5)	6372.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	4.0	15.67	29.6	13.49	11.2	20.9	12.67	7.96	18.74
Merged-chr14-111675959-2	chr14	111675477	111676477	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198865, intron 1 of 1)	CpG	862.0	NM_198865	75409.0	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	5.15	0.46	1.85	0.67	1.4	2.41	6.34	0.0	0.0
Merged-chr17-55976443-2	chr17	55975944	55976944	+	687.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001159523, exon 7 of 7)	3' UTR (NM_001159523, exon 7 of 7)	5962.0	NM_009168	20420.0	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	8.58	1.84	9.25	4.05	1.87	3.22	6.34	1.77	1.25
Merged-chr2-33435971-2	chr2	33435457	33436457	+	687.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4633.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	7.44	9.22	6.47	14.84	9.33	6.43	15.84	8.4	5.0
Merged-chr4-144893693-1	chr4	144893193	144894193	+	687.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001172424, exon 2 of 7)	exon (NM_001172424, exon 2 of 7)	556.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	49.2	72.34	52.72	82.99	129.69	94.04	90.83	94.18	52.46
Merged-chr9-121671527-3	chr9	121671009	121672009	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011703, exon 13 of 13)	3' UTR (NM_011703, exon 13 of 13)	28793.0	NM_011703	22354.0	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	1.72	4.15	5.55	3.37	1.4	0.0	3.17	1.33	1.25
Merged-chr11-6524630-3	chr11	6524117	6525117	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045893)	TTS (NR_045893)	-3659.0	NM_178440	246177.0	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	31.46	36.4	31.45	24.96	17.26	36.17	34.85	32.72	18.74
Merged-chr1-181126964-3	chr1	181126470	181127470	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026171, exon 10 of 23)	exon (NM_026171, exon 10 of 23)	17234.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	49.2	58.52	45.32	43.18	32.19	41.8	61.26	53.94	32.48
Merged-chr4-24897043-3	chr4	24896523	24897523	+	687.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1060.0	NM_026742	68493.0	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	4.0	4.61	1.85	1.35	2.8	1.61	4.22	1.77	1.25
Merged-chr1-64531658-2	chr1	64531129	64532129	+	687.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1175.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	34.32	29.95	21.27	37.11	18.66	21.7	36.97	38.91	14.99
Merged-chr13-63563901-2	chr13	63563392	63564392	+	687.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001328514, intron 1 of 23)	CpG-3956	1843.0	NM_008957	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	9.15	1.38	1.85	16.87	10.73	4.82	11.62	10.17	8.12
Merged-chr1-138239775-2	chr1	138239275	138240275	+	687.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33963.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	14.87	18.43	13.87	15.52	14.46	13.66	16.9	12.82	14.36
Merged-chr5-66076851-3	chr5	66076353	66077353	+	687.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	21326.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	44.62	52.99	38.85	47.23	30.79	39.39	47.53	66.33	31.85
Merged-chr16-91386142-1	chr16	91385642	91386642	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 4 of 7)	intron (NM_001347258, intron 4 of 7)	13359.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	121.85	99.53	82.32	124.15	75.11	120.57	109.84	92.41	103.05
Merged-chr7-139994897-1	chr7	139994397	139995397	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2335.0	NM_001291066	11501.0	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	5.72	2.76	0.0	2.02	0.93	0.0	6.34	1.33	0.62
Merged-chr2-72318641-1	chr2	72318141	72319141	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 2 of 19)	ERVL-int|LTR|ERVL	32940.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.86	2.76	6.47	4.05	1.4	4.82	7.39	5.31	3.12
Merged-chr19-47329362-1	chr19	47328862	47329862	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	RMER1C|Other|Other	-55773.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	11.44	6.45	0.0	6.07	1.87	1.61	7.39	4.86	3.12
Merged-chr11-4976584-1	chr11	4976084	4977084	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243043, intron 1 of 22)	MLT2F|LTR|ERVL	-10240.0	NM_001355659	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	1.72	2.3	1.85	3.37	2.33	0.0	1.06	1.33	3.75
Merged-chr6-120620452-1	chr6	120619952	120620952	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-45969.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	2.86	3.69	0.0	2.02	4.67	5.63	2.11	1.33	8.12
Merged-chr19-34284584-2	chr19	34284088	34285088	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6071.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.57	5.99	4.62	2.7	1.4	1.61	39.08	26.97	6.25
Merged-chr6-31813977-1	chr6	31813477	31814477	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147846.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	2.29	2.3	9.25	0.67	7.0	20.09	6.34	2.65	1.25
Merged-chr4-32343880-1	chr4	32343380	32344380	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73555.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	46.34	30.87	32.37	74.89	46.18	50.64	5.28	5.75	6.87
Merged-chr4-141635581-1	chr4	141635081	141636081	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 6 of 18)	(T)n|Simple_repeat|Simple_repeat	-11747.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	15.45	11.98	14.8	17.54	5.13	12.86	8.45	11.05	11.87
Merged-chr9-59752074-1	chr9	59751574	59752574	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	900.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	108.69	117.5	93.42	125.5	89.1	101.28	201.73	216.66	69.95
Merged-chr19-47313946-1	chr19	47313446	47314446	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 8 of 14)	intron (NM_008018, intron 8 of 14)	-40357.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	14.87	3.23	3.7	14.17	5.13	3.22	1.06	0.88	4.37
Merged-chr1-153543214-1	chr1	153542714	153543714	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 2 of 11)	intron (NM_028749, intron 2 of 11)	6500.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	18.88	21.2	36.07	28.34	20.06	30.54	19.01	7.07	2.5
Merged-chr10-9071753-2	chr10	9071251	9072251	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185681.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.86	3.23	0.0	7.42	7.0	4.82	5.28	2.65	2.5
Merged-chr1-162631275-1	chr1	162630775	162631775	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7875.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	1.14	3.69	0.0	4.05	2.8	5.63	3.17	2.65	1.25
Merged-chr5-31179431-1	chr5	31178931	31179931	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027901, intron 1 of 18)	intron (NM_027901, intron 1 of 18)	713.0	NM_027901	71752.0	Mm.271923	NM_027901	ENSMUSG00000106864	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	106.97	118.42	98.05	92.44	90.04	121.37	94.0	98.6	92.43
Merged-chr11-67080375-2	chr11	67079872	67080872	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099635, intron 3 of 40)	intron (NM_001099635, intron 3 of 40)	2072.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	1.14	0.46	0.0	0.0	0.0	4.82	2.11	1.33	3.75
Merged-chr6-29241909-3	chr6	29241390	29242390	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER119|DNA|hAT-Charlie	-25526.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	5.15	4.15	1.85	10.12	3.27	4.82	4.22	2.65	8.74
Merged-chr2-28755693-1	chr2	28755193	28756193	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033874, intron 10 of 12)	intron (NM_001033874, intron 10 of 12)	22415.0	NR_037271	100526498.0		NR_037271	ENSMUSG00000092832	Mir3088	mir-3088|mmu-mir-3088	microRNA 3088	ncRNA	4.0	2.76	5.55	2.7	2.33	0.0	2.11	0.44	0.0
Merged-chr16-91064809-1	chr16	91064309	91065309	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028905, intron 1 of 2)	intron (NM_028905, intron 1 of 2)	4336.0	NM_001163695	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	5.15	3.23	3.7	4.05	3.27	6.43	4.22	6.19	3.75
Merged-chr6-99026924-2	chr6	99026464	99027464	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1334.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	24.03	30.87	15.72	24.96	10.73	12.86	30.63	20.34	11.24
Merged-chr11-118356400-1	chr11	118355900	118356900	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011594)	promoter-TSS (NM_011594)	-989.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	5.15	7.37	7.4	6.75	7.0	12.86	9.51	5.75	8.12
Merged-chr10-128895637-3	chr10	128895139	128896139	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3921.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	4.58	1.84	0.0	3.37	2.8	3.22	3.17	4.42	1.87
Merged-chr15-10888083-1	chr15	10887583	10888583	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER97a|DNA|hAT-Tip100	59032.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	25.74	27.19	4.62	22.27	15.86	16.08	27.46	22.99	12.49
Merged-chr8-106574507-1	chr8	106574007	106575007	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12636.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	5.15	6.45	3.7	9.45	5.13	1.61	8.45	3.54	5.0
Merged-chr4-139197675-2	chr4	139197174	139198174	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	3563.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	122.42	158.51	144.29	136.97	120.83	109.32	125.69	162.72	93.05
Merged-chr13-49055904-1	chr13	49055404	49056404	+	687.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 23 of 29)	intron (NM_001290313, intron 23 of 29)	87792.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	4.58	7.37	0.92	8.77	0.0	0.8	3.17	0.0	7.49
Merged-chr2-16253568-1	chr2	16253068	16254068	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 38 of 38)	L1_Mus2|LINE|L1	-102736.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	3.43	3.23	7.4	0.67	3.27	4.82	3.17	1.33	3.12
Merged-chr7-132765825-1	chr7	132765325	132766325	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 2 of 3)	intron (NM_001347630, intron 2 of 3)	11091.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	20.59	19.81	21.27	30.36	21.46	17.68	14.79	12.82	10.62
Merged-chr1-165609704-1	chr1	165609204	165610204	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	intron (NM_001083897, intron 1 of 5)	24837.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	7.44	7.37	11.1	21.59	8.86	13.66	9.51	4.86	1.25
Merged-chrX-102252171-2	chrX	102251674	102252674	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007709)	promoter-TSS (NM_007709)	7.0	NM_001276466	12705.0	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.57	0.92	2.77	4.05	0.93	3.22	0.0	0.0	2.5
Merged-chr2-34644828-2	chr2	34644323	34645323	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110409.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	1.72	0.46	3.7	5.4	1.4	1.61	4.22	2.21	1.25
Merged-chr2-42188228-1	chr2	42187728	42188728	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	259340.0	NR_105754	102465171.0		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	10.3	12.44	12.95	9.45	12.13	8.04	13.73	12.38	16.24
Merged-chr9-15300227-1	chr9	15299727	15300727	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199485, intron 2 of 8)	B3|SINE|B2	1380.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	13.73	7.83	1.85	6.07	7.0	1.61	8.45	8.84	5.0
Merged-chr10-52234073-2	chr10	52233584	52234584	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347444, intron 1 of 9)	CpG	465.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	42.9	47.92	27.75	92.44	67.18	67.52	60.2	21.67	19.98
Merged-chr11-31851257-1	chr11	31850757	31851757	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19683.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	6.29	9.22	21.27	16.19	14.46	28.94	7.39	3.54	2.5
Merged-chr10-24059108-1	chr10	24058608	24059608	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER45C|DNA|hAT-Tip100	9598.0	NM_001010839	435207.0	Mm.377966	NM_001010839	ENSMUSG00000100950	Taar7f	taR-7f	trace amine-associated receptor 7F	protein-coding	4.58	2.76	0.0	0.67	2.33	1.61	3.17	5.31	5.0
Merged-chr1-87849101-1	chr1	87848601	87849601	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-4186.0	NM_177646	227333.0	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	38.33	35.48	15.72	87.04	65.78	33.76	30.63	38.47	21.86
Merged-chr8-24420537-2	chr8	24420030	24421030	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18416.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	20.59	7.83	1.85	52.63	21.93	42.6	44.36	28.74	16.86
Merged-chr15-66807382-2	chr15	66806876	66807876	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	Tigger16a|DNA|TcMar-Tigger	24453.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	10.3	11.06	12.02	16.19	14.93	22.51	10.56	8.84	9.37
Merged-chr3-149441439-1	chr3	149440939	149441939	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166702.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	4.58	2.3	0.0	2.7	1.4	4.82	2.11	5.31	1.25
Merged-chr12-82276370-1	chr12	82275870	82276870	+	687.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 3 of 23)	intron (NM_001167983, intron 3 of 23)	-34979.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	17.16	18.43	12.95	28.34	22.86	44.21	23.24	13.27	13.12
Merged-chr19-53265873-2	chr19	53265424	53266424	+	687.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	-10719.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	5.72	3.69	3.7	10.8	7.46	0.8	5.28	0.88	5.0
Merged-chr6-17590404-1	chr6	17589904	17590904	+	687.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46606.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.29	7.83	0.0	8.1	1.87	4.82	42.25	36.26	20.61
Merged-chr17-78407793-3	chr17	78407281	78408281	+	686.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360407, intron 2 of 9)	intron (NM_001360407, intron 2 of 9)	10371.0	NM_001285949	225020.0	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	17.16	19.35	9.25	20.92	28.46	9.65	20.07	12.38	9.99
Merged-chr11-70675253-2	chr11	70674750	70675750	+	686.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190379, intron 12 of 20)	intron (NM_001190379, intron 12 of 20)	-5834.0	NM_001167669	216873.0	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	9.15	8.29	15.72	9.45	10.26	22.51	11.62	4.86	12.49
Merged-chr13-117602374-3	chr13	117601872	117602872	+	686.855591	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010408)	promoter-TSS (NM_010408)	52.0	NM_010408	15165.0	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	2.29	0.0	1.85	0.67	1.87	1.61	0.0	0.0	2.5
Merged-chr8-79375770-3	chr8	79375293	79376293	+	686.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	23675.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	65.79	76.95	60.12	71.52	57.85	62.7	72.88	78.71	44.97
Merged-chr13-112100845-2	chr13	112100347	112101347	+	686.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-187604.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	6.29	7.83	5.55	10.12	3.73	1.61	3.17	1.77	3.75
Merged-chr8-116944152-2	chr8	116943610	116944610	+	686.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	717.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	166.47	162.66	117.47	116.05	140.89	112.53	113.01	103.91	61.2
Merged-chr5-121501686-2	chr5	121501180	121502180	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172125, exon 1 of 1)	exon (NM_172125, exon 1 of 1)	1300.0	NM_172125	280667.0	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	20.59	20.27	20.35	23.62	29.86	26.53	17.96	9.73	8.12
Merged-chr9-121372188-1	chr9	121371688	121372688	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357973, intron 1 of 5)	intron (NM_001357973, intron 1 of 5)	5230.0	NM_175114	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	10.87	5.07	1.85	11.47	12.13	15.27	16.9	12.82	23.11
Merged-chr7-80439523-2	chr7	80439010	80440010	+	686.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34074.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	21.17	18.43	22.2	24.96	16.79	22.51	30.63	28.3	19.98
Merged-chr3-95136544-3	chr3	95136041	95137041	+	686.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153121, intron 1 of 2)	intron (NM_153121, intron 1 of 2)	2453.0	NM_153121	217779.0	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	29.17	51.61	25.9	41.16	43.39	58.68	68.65	108.33	36.22
Merged-chr1-36128661-2	chr1	36128181	36129181	+	686.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15632.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	49.2	47.46	35.15	116.05	99.83	86.01	133.08	123.81	56.83
Merged-chr8-127861108-1	chr8	127860608	127861608	+	686.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	417117.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	1.72	4.61	0.0	10.8	2.8	4.82	4.22	0.44	1.87
Merged-chr15-7941887-1	chr15	7941387	7942387	+	686.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 10 of 17)	intron (NM_001081402, intron 10 of 17)	126337.0	NM_001301357	14573.0	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	22.31	10.14	18.5	12.14	10.26	13.66	24.29	16.8	14.36
Merged-chr9-98297770-1	chr9	98297270	98298270	+	686.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357445, intron 1 of 3)	intron (NM_001357445, intron 1 of 3)	1200.0	NM_001357451	74080.0	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	75.51	70.5	49.02	118.75	188.47	120.57	95.06	90.64	50.59
Merged-chr19-21820404-3	chr19	21819946	21820946	+	686.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033759, intron 12 of 23)	intron (NM_001033759, intron 12 of 23)	42106.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	10.87	5.99	11.1	6.75	4.2	6.43	12.67	4.86	5.0
Merged-chr16-21908674-2	chr16	21908207	21909207	+	686.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172821, exon 7 of 13)	exon (NM_172821, exon 7 of 13)	16738.0	NM_172821	71751.0	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	25.74	17.97	11.1	47.9	46.65	16.88	32.74	40.68	19.36
Merged-chr7-100818697-2	chr7	100818209	100819209	+	686.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	44704.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	24.6	25.8	26.82	26.31	15.86	25.72	21.12	29.18	20.61
Merged-chr6-97804615-2	chr6	97804137	97805137	+	686.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2421.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	71.51	88.01	62.9	56.68	34.06	45.01	99.28	80.03	55.58
Merged-chrX-74023266-3	chrX	74022775	74023775	+	686.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039594)	TTS (NR_039594)	323.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	160.75	146.99	98.97	149.11	159.55	122.18	125.69	122.04	67.45
Merged-chr5-148332756-2	chr5	148332242	148333242	+	686.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007513, intron 12 of 12)	intron (NM_007513, intron 12 of 12)	60073.0	NM_001301424	11987.0	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	9.72	0.92	0.92	3.37	0.93	0.8	2.11	1.33	0.0
Merged-chr5-124873296-2	chr5	124872799	124873799	+	686.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081750, intron 2 of 3)	intron (NM_001081750, intron 2 of 3)	10594.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	25.17	15.67	26.82	14.84	11.2	5.63	7.39	4.86	2.5
Merged-chr17-80719473-2	chr17	80718967	80719967	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	Charlie1|DNA|hAT-Charlie	8558.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	9.72	6.45	15.72	12.14	10.26	12.86	14.79	6.19	12.49
Merged-chr7-4725402-2	chr7	4724917	4725917	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177887)	promoter-TSS (NM_177887)	-166.0	NM_177887	330460.0	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	29.17	45.16	43.47	31.04	24.72	36.97	25.35	30.95	39.97
Merged-chr1-36914042-1	chr1	36913542	36914542	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	intron (NM_018872, intron 1 of 40)	25485.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	53.2	47.46	40.7	26.99	21.46	32.15	22.18	12.82	29.98
Merged-chr15-53415545-2	chr15	53415045	53416045	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69362.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	172.76	160.35	90.65	166.66	86.77	151.92	129.91	140.17	129.28
Merged-chr6-66944600-2	chr6	66944084	66945084	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	47693.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	9.15	0.46	2.77	5.4	5.13	4.82	7.39	7.07	8.74
Merged-chr2-24587945-2	chr2	24587433	24588433	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112334.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	5.72	2.76	5.55	1.35	2.8	1.61	6.34	3.1	2.5
Merged-chr2-60031208-1	chr2	60030708	60031708	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	94532.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	7.44	6.45	3.7	8.1	6.53	5.63	6.34	2.21	2.5
Merged-chr2-155136074-1	chr2	155135574	155136574	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	2593.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	91.53	80.18	56.42	64.77	44.78	80.38	121.46	103.47	63.7
Merged-chrX-144232550-2	chrX	144232051	144233051	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65239.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	9.72	5.07	0.0	12.82	8.86	11.25	4.22	2.21	1.25
Merged-chr11-67545311-2	chr11	67544809	67545809	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	intron (NM_008088, intron 1 of 13)	12311.0	NM_008088	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	6.29	5.99	3.7	7.42	6.06	6.43	23.24	9.73	3.75
Merged-chr17-22410959-2	chr17	22410452	22411452	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-13250.0	NM_001331197	74149.0	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	2.86	0.92	3.7	6.07	1.87	0.0	1.06	0.0	2.5
Merged-chr14-19714987-2	chr14	19714561	19715561	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36196.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	24.6	47.0	38.85	24.96	33.12	47.42	32.74	26.97	23.73
Merged-chr5-101763647-1	chr5	101763147	101764147	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1483.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	5.15	2.76	0.92	4.72	5.13	0.0	4.22	3.54	1.87
Merged-chr3-37693114-1	chr3	37692614	37693614	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	31246.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	2.86	4.61	3.7	6.07	3.73	8.84	4.22	5.75	6.87
Merged-chr11-57820243-1	chr11	57819743	57820743	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11904.0	NM_008213	15110.0	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed 1	protein-coding	5.72	1.38	5.55	4.72	0.93	1.61	3.17	1.33	5.0
Merged-chr4-86671108-1	chr4	86670608	86671608	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	110.41	97.23	79.55	114.7	126.89	128.61	96.11	97.72	73.07
Merged-chr5-110377015-3	chr5	110376543	110377543	+	686.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142642, intron 11 of 18)	intron (NM_001142642, intron 11 of 18)	10084.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	4.0	2.3	1.85	3.37	1.87	3.22	2.11	1.77	2.5
Merged-chr4-53429985-1	chr4	53429485	53430485	+	686.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10428.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	6.86	7.37	9.25	5.4	13.06	6.43	0.0	3.1	7.49
Merged-chr7-116308511-3	chr7	116307978	116308978	+	686.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001305185)	promoter-TSS (NM_001305185)	-102.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	15.45	4.61	11.1	12.14	5.6	7.23	8.45	3.98	0.0
Merged-chr6-129518199-2	chr6	129517695	129518695	+	686.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081186, exon 5 of 5)	3' UTR (NM_001081186, exon 5 of 5)	5638.0	NM_001081186	330428.0	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	4.0	2.3	3.7	3.37	0.93	0.8	1.06	1.77	1.25
Merged-chr17-67585473-2	chr17	67584975	67585975	+	686.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	43857.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	2.86	1.84	0.0	6.07	0.47	0.0	3.17	3.1	0.0
Merged-chr19-4338402-2	chr19	4337895	4338895	+	686.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001984, intron 12 of 20)	B3A|SINE|B2	-32173.0	NM_001290818	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	14.87	5.07	12.95	9.45	2.33	4.82	1.06	3.98	2.5
Merged-chr1-36572954-2	chr1	36572439	36573439	+	686.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 12 of 14)	intron (NM_001126046, intron 12 of 14)	-14558.0	NM_001126047	20353.0	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	97.25	129.02	148.92	103.23	76.04	163.97	157.37	173.33	111.79
Merged-chr5-137785416-2	chr5	137784911	137785911	+	686.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	1290.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	67.5	30.41	40.7	63.42	38.25	45.82	60.2	46.87	25.61
Merged-chr16-57182164-1	chr16	57181664	57182664	+	686.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358433, intron 14 of 18)	intron (NM_001358433, intron 14 of 18)	-14832.0	NM_023175	52633.0	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	37.18	43.31	38.85	35.76	28.46	42.6	38.02	45.99	42.47
Merged-chr9-57510904-3	chr9	57510418	57511418	+	686.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	6816.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	3.43	2.76	9.25	2.7	2.8	3.22	9.51	4.42	1.25
Merged-chr5-44226133-1	chr5	44225633	44226633	+	686.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	CpG	473.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	110.41	50.23	55.5	91.09	35.92	60.28	96.11	34.05	28.1
Merged-chr11-79019489-2	chr11	79018987	79019987	+	686.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348207, intron 16 of 17)	intron (NM_001348207, intron 16 of 17)	-4110.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	18.31	4.61	3.7	6.07	4.67	4.82	2.11	3.1	6.87
Merged-chr13-45115149-2	chr13	45114646	45115646	+	686.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113050.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	12.01	6.45	1.85	6.07	5.6	6.43	4.22	0.44	5.0
Merged-chr15-31627486-3	chr15	31627008	31628008	+	686.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25392.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	24.03	27.65	33.3	37.11	31.72	39.39	55.98	39.35	28.73
Merged-chr10-118892714-2	chr10	118892216	118893216	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23813.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	12.59	15.21	6.47	14.17	8.86	4.02	9.51	7.07	8.12
Merged-chr8-80058015-2	chr8	80057525	80058525	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020259)	promoter-TSS (NM_020259)	-17.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	5.15	1.38	1.85	2.7	1.87	3.22	3.17	1.33	0.0
Merged-chr9-65629824-3	chr9	65629277	65630277	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028030)	promoter-TSS (NM_028030)	-805.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	8.58	6.45	1.85	14.17	4.2	4.02	11.62	1.77	4.37
Merged-chr9-111289260-2	chr9	111288760	111289760	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17415.0	NM_175266	77781.0	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	57.21	57.6	34.22	52.63	48.52	57.87	76.05	101.7	42.47
Merged-chr13-43919953-2	chr13	43919443	43920443	+	686.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	134831.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.29	3.69	1.85	3.37	4.2	3.22	4.22	1.77	2.5
Merged-chr4-57957544-3	chr4	57956999	57957999	+	686.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1088.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	213.38	327.16	188.69	227.38	291.1	228.28	232.36	309.96	179.86
Merged-chr7-125560709-3	chr7	125560209	125561209	+	686.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008700, intron 1 of 10)	PB1D9|SINE|Alu	8427.0	NM_001008700	16190.0	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	29.17	26.73	33.3	31.04	25.19	32.96	39.08	32.72	21.86
Merged-chr11-116434798-3	chr11	116434271	116435271	+	686.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176902, intron 2 of 2)	CpG-2855	558.0	NR_003376	664849.0	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	141.3	94.0	83.25	155.86	81.17	92.44	155.26	113.19	79.94
Merged-chr1-87581040-2	chr1	87580517	87581517	+	686.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160163, intron 2 of 3)	intron (NM_001160163, intron 2 of 3)	-3005.0	NM_001160165	23956.0	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	4.58	6.45	2.77	2.02	4.67	4.82	5.28	0.88	3.12
Merged-chr3-127762070-2	chr3	127761580	127762580	+	686.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027808, intron 1 of 13)	intron (NM_027808, intron 1 of 13)	18447.0	NM_027808	71481.0	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	40.04	30.41	9.25	41.16	33.12	30.54	20.07	12.82	8.12
Merged-chr9-37529781-2	chr9	37529284	37530284	+	686.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	1695.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	7.44	3.23	4.62	4.72	3.27	1.61	2.11	5.75	2.5
Merged-chr4-24574462-3	chr4	24573941	24574941	+	686.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_199467, exon 14 of 24)	exon (NM_199467, exon 14 of 24)	77990.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	5.72	3.69	5.55	2.7	2.33	1.61	1.06	0.88	2.5
Merged-chr8-95099182-1	chr8	95098682	95099682	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001145831)	TTS (NM_001145831)	14160.0	NM_001145832	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	2.29	2.76	0.0	4.05	4.2	6.43	2.11	0.0	5.0
Merged-chr18-82815873-2	chr18	82815375	82816375	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40022.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	8.01	2.76	7.4	10.8	5.6	12.06	21.12	4.42	6.25
Merged-chr5-140611804-1	chr5	140611304	140612304	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	4463.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	23.45	23.04	22.2	30.36	26.12	49.83	40.14	24.76	18.11
Merged-chr1-39906226-1	chr1	39905726	39906726	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	5313.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	3.43	0.0	2.77	4.72	2.8	0.0	1.06	3.54	2.5
Merged-chr12-100492805-1	chr12	100492305	100493305	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033213, intron 3 of 19)	intron (NM_001033213, intron 3 of 19)	28017.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	2.86	0.0	3.7	2.02	3.73	1.61	2.11	0.44	1.25
Merged-chr11-48779629-1	chr11	48779129	48780129	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20731.0	NM_008143	14694.0	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	5.15	3.23	0.0	6.07	3.73	3.22	2.11	1.33	5.0
Merged-chr11-121795093-2	chr11	121794568	121795568	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35150.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	13.73	32.25	15.72	37.11	25.66	77.97	33.8	32.28	39.97
Merged-chr5-5481885-1	chr5	5481385	5482385	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2742.0	NM_001200025	381716.0	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	2.86	4.15	0.92	1.35	2.33	3.22	0.0	0.44	9.37
Merged-chr6-114297796-2	chr6	114297299	114298299	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178703, intron 1 of 15)	intron (NM_178703, intron 1 of 15)	15164.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	4.58	1.84	9.25	4.72	2.33	0.0	5.28	2.21	2.5
Merged-chr7-19498479-1	chr7	19497979	19498979	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9852.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	25.74	41.01	52.72	26.99	31.26	39.39	55.98	49.96	31.23
Merged-chr2-118200061-1	chr2	118199561	118200561	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56905.0	NM_027759	71313.0	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	10.3	2.3	0.0	4.72	2.33	4.82	3.17	1.33	0.0
Merged-chr7-102396507-1	chr7	102396007	102397007	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	RSINE1|SINE|B4	-45188.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	18.88	23.96	37.0	20.92	22.86	12.06	16.9	19.01	18.74
Merged-chr17-71599550-1	chr17	71599050	71600050	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015549)	promoter-TSS (NR_015549)	-789.0	NR_027952	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	42.9	39.17	12.02	71.52	50.38	38.58	64.43	47.75	23.73
Merged-chr1-133135043-1	chr1	133134543	133135543	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133819, intron 1 of 1)	intron (NM_133819, intron 1 of 1)	3877.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	25.74	31.79	22.2	42.51	25.19	14.47	24.29	22.55	14.36
Merged-chr2-117195669-3	chr2	117195122	117196122	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10495.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	25.74	17.97	32.37	23.62	18.66	41.8	16.9	13.71	9.99
Merged-chr1-180807163-1	chr1	180806663	180807663	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008210, intron 3 of 3)	B3A|SINE|B2	6442.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	8.01	5.53	7.4	3.37	5.13	3.22	6.34	4.42	6.87
Merged-chr16-91463640-1	chr16	91463140	91464140	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-1464.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	141.87	127.64	77.7	175.43	92.84	122.98	201.73	187.48	91.18
Merged-chr11-86653624-1	chr11	86653124	86654124	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356531, intron 5 of 11)	intron (NM_001356531, intron 5 of 11)	17651.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	45.76	52.53	32.37	27.66	42.92	45.82	57.03	64.56	33.1
Merged-chr2-43794126-1	chr2	43793626	43794626	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	45302.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	17.73	25.8	4.62	14.17	16.79	20.09	19.01	19.01	8.12
Merged-chr5-16326853-1	chr5	16326353	16327353	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110843, intron 20 of 38)	intron (NM_001110843, intron 20 of 38)	-226642.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	1.14	4.61	5.55	7.42	3.73	1.61	2.11	3.98	0.0
Merged-chr10-36888335-2	chr10	36887822	36888822	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86222.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	2.86	7.37	12.95	4.72	4.2	9.65	3.17	3.98	3.75
Merged-chr12-85462966-1	chr12	85462466	85463466	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	14.87	9.68	6.47	14.84	8.4	15.27	6.34	5.75	6.87
Merged-chr10-44776414-1	chr10	44775914	44776914	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-290800.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	8.01	5.07	0.0	3.37	5.13	2.41	3.17	4.42	5.0
Merged-chr1-194999675-1	chr1	194999175	195000175	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17724.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	9.72	16.13	29.6	18.22	10.73	12.86	16.9	14.59	10.62
Merged-chr4-152011052-1	chr4	152010552	152011552	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033352, intron 1 of 3)	intron (NM_001033352, intron 1 of 3)	2161.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	58.92	35.02	16.65	75.57	69.04	32.96	26.4	21.22	26.85
Merged-chr6-89200923-1	chr6	89200423	89201423	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15256.0	NR_033190	330379.0	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	0.0	0.0	0.0	4.05	2.33	0.0	1.06	0.0	0.0
Merged-chr11-69614215-3	chr11	69613720	69614720	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011367)	TTS (NM_011367)	3685.0	NM_011367	20415.0	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	5.15	2.3	1.85	6.07	2.33	6.43	1.06	7.07	5.0
Merged-chr18-47998129-1	chr18	47997629	47998629	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	-47206.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	2.29	3.23	3.7	5.4	7.0	9.65	8.45	7.52	8.74
Merged-chr8-41199089-1	chr8	41198589	41199589	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145594, intron 5 of 7)	intron (NM_145594, intron 5 of 7)	16067.0	NM_145594	234199.0	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	3.43	0.46	0.0	4.72	1.4	1.61	3.17	3.98	2.5
Merged-chr16-16473567-1	chr16	16473067	16474067	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 7 of 16)	RLTR10D2|LTR|ERVK	53844.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	14.87	6.45	9.25	22.27	8.86	16.88	9.51	5.75	8.74
Merged-chr15-99265847-2	chr15	99265338	99266338	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13877.0	NM_016766	51812.0	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	1.72	7.37	8.32	4.72	1.87	4.02	2.11	3.98	6.25
Merged-chr13-35452632-2	chr13	35452149	35453149	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-207213.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	5.72	6.91	3.7	4.72	6.06	3.22	4.22	0.88	5.0
Merged-chr11-58024843-1	chr11	58024343	58025343	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	15779.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	9.72	7.37	18.5	10.12	3.73	6.43	7.39	7.07	3.75
Merged-chr10-79988555-1	chr10	79988055	79989055	+	686.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007725)	promoter-TSS (NM_007725)	-45.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	24.6	14.75	11.1	26.99	16.79	16.08	8.45	11.94	11.24
Merged-chrX-20365747-1	chrX	20365247	20366247	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290644, intron 2 of 5)	intron (NM_001290644, intron 2 of 5)	1266.0	NR_110967	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	20.02	54.83	14.8	23.62	21.93	28.94	36.97	31.39	20.61
Merged-chr8-128941399-1	chr8	128940899	128941899	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	124093.0	NM_029061	74703.0	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	5.15	0.46	1.85	0.0	3.73	0.0	2.11	0.88	1.25
Merged-chr5-99229719-1	chr5	99229219	99230219	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 8 of 13)	MER58B|DNA|hAT-Charlie	23208.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	30.89	28.57	50.87	22.27	20.53	28.94	20.07	17.69	22.48
Merged-chr17-71012140-1	chr17	71011640	71012640	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-7417.0	NM_010867	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	8.58	5.99	0.92	8.77	2.8	6.43	10.56	7.52	11.24
Merged-chr15-24596471-2	chr15	24595970	24596970	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	817294.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.86	3.23	0.0	6.75	4.67	0.0	4.22	3.98	2.5
Merged-chr5-105507509-1	chr5	105507009	105508009	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-11962.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	56.63	53.91	49.02	74.22	62.05	58.68	5.28	2.21	8.12
Merged-chr17-56479562-2	chr17	56479057	56480057	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3077.0	NM_011218	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	4.0	1.38	0.0	4.72	1.87	0.0	3.17	0.88	5.62
Merged-chr19-29370701-1	chr19	29370201	29371201	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	B2_Mm2|SINE|B2	3263.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	37.76	73.26	24.97	28.34	26.12	37.78	61.26	69.42	44.97
Merged-chr18-46604495-2	chr18	46603990	46604990	+	686.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	intron (NM_010120, intron 2 of 2)	6786.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	10.87	11.06	7.4	13.49	13.06	6.43	13.73	5.75	2.5
Merged-chr14-45652238-1	chr14	45651738	45652738	+	686.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	B3|SINE|B2	5815.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	12.01	11.52	17.57	9.45	7.46	18.49	74.99	55.71	36.85
Merged-chr2-59889443-3	chr2	59888946	59889946	+	685.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-6840.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	12.59	11.52	8.32	18.89	24.26	36.17	14.79	22.11	14.99
Merged-chr7-19076732-2	chr7	19076227	19077227	+	685.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	527.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	16.02	17.97	27.75	14.17	4.2	11.25	149.98	87.99	70.57
Merged-chr1-165660961-2	chr1	165660460	165661460	+	685.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 2 of 5)	intron (NM_001038846, intron 2 of 5)	-26419.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	49.77	34.56	29.6	50.6	37.79	41.8	42.25	60.13	35.6
Merged-chr8-109862730-2	chr8	109862210	109863210	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009677, exon 24 of 24)	3' UTR (NM_009677, exon 24 of 24)	-5893.0	NM_001122594	244650.0	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	28.6	41.93	52.72	45.21	33.59	50.64	45.42	50.41	39.97
Merged-chr13-43269158-2	chr13	43268657	43269657	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033399, intron 1 of 1)	MER21B|LTR|ERVL	35015.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	6.86	4.15	3.7	2.7	5.13	1.61	3.17	5.31	3.75
Merged-chr6-49074697-2	chr6	49074196	49075196	+	685.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029353, intron 1 of 3)	intron (NM_029353, intron 1 of 3)	901.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	81.8	90.77	65.67	48.58	36.39	42.6	69.71	74.28	41.84
Merged-chr11-70280668-3	chr11	70280179	70281179	+	685.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25309.0	NM_007440	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	13.73	5.07	2.77	4.05	4.2	5.63	10.56	1.77	6.25
Merged-chr15-77542042-1	chr15	77541542	77542542	+	685.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8727.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	9.72	5.53	12.95	4.05	4.2	4.02	13.73	11.94	16.24
Merged-chr4-99116065-3	chr4	99115578	99116578	+	685.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 1 of 47)	intron (NM_026082, intron 1 of 47)	4837.0	NM_001290636	67299.0	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	20.02	21.2	30.52	18.89	10.73	13.66	16.9	15.03	20.61
Merged-chr14-45659762-2	chr14	45659270	45660270	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1627.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	42.9	52.53	69.37	34.41	41.52	46.62	46.47	41.56	38.1
Merged-chr10-84387432-1	chr10	84386932	84387932	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	intron (NM_001004363, intron 4 of 6)	53039.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	17.16	20.27	12.95	23.62	22.39	24.92	13.73	9.29	12.49
Merged-chr17-27708130-2	chr17	27707651	27708651	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286743, intron 9 of 9)	intron (NM_001286743, intron 9 of 9)	20800.0	NM_013891	30051.0	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	1.14	2.76	5.55	4.05	0.93	0.0	4.22	0.88	3.12
Merged-chr15-67415938-2	chr15	67415461	67416461	+	685.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERV3-16A3_I-int|LTR|ERVL	189192.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	8.01	3.69	1.85	6.75	9.33	3.22	11.62	6.19	5.62
Merged-chr14-41033560-2	chr14	41033048	41034048	+	685.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19715.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	3.43	0.92	1.85	5.4	0.47	0.0	1.06	2.21	6.25
Merged-chr2-103872138-3	chr2	103871638	103872638	+	685.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28813.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	2.29	0.46	5.55	2.02	1.4	0.8	0.0	0.88	1.25
Merged-chr6-121210749-3	chr6	121210304	121211304	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017379)	promoter-TSS (NM_017379)	70.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	4.58	1.84	1.85	7.42	3.73	0.0	3.17	1.33	1.25
Merged-chr14-105296335-1	chr14	105295835	105296835	+	685.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029561, intron 4 of 7)	intron (NM_029561, intron 4 of 7)	37662.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	5.15	5.99	8.32	0.0	0.93	3.22	1.06	0.88	6.25
Merged-chr4-11602651-3	chr4	11602157	11603157	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039556, intron 8 of 14)	intron (NM_001039556, intron 8 of 14)	22995.0	NM_001256142	100503583.0	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	2.29	5.07	1.85	4.72	3.27	4.82	11.62	2.21	3.75
Merged-chr8-8689426-3	chr8	8688901	8689901	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106114)	TTS (NR_106114)	761.0	NR_106114	102465762.0		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	89.81	66.35	58.27	86.36	71.38	74.75	99.28	72.52	58.08
Merged-chr12-25098029-3	chr12	25097544	25098544	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1952.0	NM_010496	15902.0	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	332.94	346.97	241.41	360.97	350.35	241.94	419.31	359.04	229.83
Merged-chr13-37947006-3	chr13	37946492	37947492	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033615, exon 9 of 10)	non-coding (NR_033615, exon 9 of 10)	47216.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	12.59	11.06	17.57	14.17	4.67	15.27	11.62	4.42	3.75
Merged-chr19-10959736-3	chr19	10959233	10960233	+	685.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10467.0	NM_023731	108673.0	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	5.72	3.23	2.77	5.4	1.87	1.61	6.34	3.98	9.99
Merged-chr1-79786714-2	chr1	79786219	79787219	+	685.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10701.0	NM_001081210	69163.0	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	2.86	2.3	3.7	4.05	2.33	0.0	2.11	2.21	9.99
Merged-chr10-40057769-3	chr10	40057223	40058223	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-32455.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	13.73	8.75	21.27	12.82	5.6	4.02	10.56	8.4	5.62
Merged-chr11-58179760-3	chr11	58179263	58180263	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175001)	TTS (NM_175001)	-4080.0	NM_001135115	631323.0	Mm.394103	NM_001135115		Gm12250	Irgb10	predicted gene 12250	protein-coding	5.72	9.22	12.95	3.37	3.73	1.61	8.45	7.52	5.62
Merged-chr19-56069111-3	chr19	56068616	56069616	+	685.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	173795.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	1.72	5.07	5.55	2.7	3.73	4.82	3.17	1.33	0.62
Merged-chr9-95563432-3	chr9	95562930	95563930	+	685.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3613.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	90.96	114.74	89.72	112.0	93.3	121.37	139.42	153.87	77.44
Merged-chr6-37448099-3	chr6	37447581	37448581	+	685.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5933.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	4.58	5.99	1.85	9.45	1.4	1.61	3.17	3.98	2.5
Merged-chr16-32707558-1	chr16	32707058	32708058	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28328.0	NM_080457	140474.0	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	9.72	5.53	1.85	8.77	5.6	8.04	10.56	11.5	5.0
Merged-chr19-34921711-1	chr19	34921211	34922211	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-647.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	46.34	67.74	61.05	68.82	77.44	81.99	89.78	100.37	51.84
Merged-chr12-75734063-4	chr12	75733543	75734543	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030750, intron 1 of 2)	intron (NM_030750, intron 1 of 2)	1686.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	145.3	168.19	75.85	147.09	133.89	121.37	125.69	182.62	83.69
Merged-chr1-186706082-1	chr1	186705582	186706582	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329107)	promoter-TSS (NM_001329107)	-93.0	NM_001329107	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	7.44	2.76	3.7	6.75	1.4	4.02	6.34	5.31	3.75
Merged-chr6-29396578-2	chr6	29396057	29397057	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347072)	promoter-TSS (NM_001347072)	-18.0	NM_001347071	232664.0	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	2.86	0.46	0.0	5.4	0.93	0.0	3.17	1.33	0.0
Merged-chr15-97817141-1	chr15	97816641	97817641	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204280, intron 1 of 21)	intron (NM_001204280, intron 1 of 21)	-2278.0	NM_001204281	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	6.86	3.69	5.55	24.96	26.59	4.82	12.67	5.75	5.0
Merged-chr9-53673785-1	chr9	53673285	53674285	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6278.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	6.29	4.15	3.7	2.7	0.47	1.61	4.22	3.1	5.0
Merged-chr7-114416003-3	chr7	114415528	114416528	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029437)	promoter-TSS (NR_029437)	774.0	NM_011055	18576.0	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	8.01	5.07	3.7	30.36	15.86	16.88	4.22	2.65	7.49
Merged-chrX-6400006-3	chrX	6399514	6400514	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040459)	promoter-TSS (NM_001040459)	-18.0	NM_001040459	208431.0	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	8.58	1.38	5.55	9.45	7.0	1.61	7.39	4.42	7.49
Merged-chr7-66661773-2	chr7	66661286	66662286	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080443, intron 4 of 5)	B3A|SINE|B2	27775.0	NM_080443	117589.0	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	2.86	3.69	0.0	1.35	0.47	4.82	2.11	2.21	0.0
Merged-chr3-89281233-2	chr3	89280739	89281739	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162425)	promoter-TSS (NM_001162425)	-288.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	22.88	8.75	9.25	20.92	11.66	18.49	20.07	19.46	5.62
Merged-chr18-53857838-2	chr18	53857343	53858343	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	2.86	4.61	0.0	5.4	3.27	4.82	2.11	0.88	3.75
Merged-chr3-137938703-1	chr3	137938203	137939203	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 6 of 8)	intron (NM_011932, intron 6 of 8)	20148.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	5.72	5.99	3.7	5.4	4.2	7.23	2.11	1.33	7.49
Merged-chr5-123344439-3	chr5	123343951	123344951	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029850)	promoter-TSS (NM_029850)	3.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	19.45	5.53	7.4	18.89	12.6	8.04	11.62	3.1	7.49
Merged-chr2-84381359-1	chr2	84380859	84381859	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	43907.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	11.44	10.14	3.7	14.17	16.79	2.41	6.34	6.19	3.12
Merged-chr2-142813194-2	chr2	142812694	142813694	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 12 of 26)	intron (NM_001355123, intron 12 of 26)	88270.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.43	3.23	1.85	3.37	2.33	6.43	1.06	3.98	2.5
Merged-chr10-128612816-2	chr10	128612317	128613317	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13689.0	NM_013765	27370.0	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	2.86	5.07	1.85	3.37	1.87	0.0	1.06	2.21	0.0
Merged-chr3-19562610-2	chr3	19562111	19563111	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163536, intron 2 of 4)	intron (NM_001163536, intron 2 of 4)	31364.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.58	3.23	0.0	4.05	0.93	4.02	1.06	1.33	5.0
Merged-chr1-189927840-1	chr1	189927340	189928340	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5549.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.86	1.38	3.7	1.35	2.8	6.43	1.06	3.98	1.25
Merged-chr3-8981021-2	chr3	8980509	8981509	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MTD|LTR|ERVL-MaLR	-16863.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	101.25	82.94	56.42	97.83	68.11	62.7	65.48	57.92	16.86
Merged-chr10-17579006-2	chr10	17578525	17579525	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-144203.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	13.73	14.75	27.75	12.82	16.33	16.88	15.84	15.03	23.11
Merged-chr15-38404092-2	chr15	38403571	38404571	+	685.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR19-int|LTR|ERVK	86476.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.72	8.75	0.0	8.77	6.53	20.09	9.51	3.98	3.75
Merged-chr4-32950922-1	chr4	32950422	32951422	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001012451)	promoter-TSS (NM_001012451)	-96.0	NM_001012451	140577.0	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	1.72	0.46	1.85	0.67	1.87	2.41	0.0	1.33	2.5
Merged-chr12-85758999-1	chr12	85758499	85759499	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145447, intron 1 of 9)	LTR31|LTR|ERV1	12460.0	NM_145447	217721.0	Mm.301076	NM_145447	ENSMUSG00000034258	Flvcr2	CCT|Mfsd7c	feline leukemia virus subgroup C cellular receptor 2	protein-coding	6.29	1.84	1.85	4.05	4.2	2.41	1.06	3.1	6.25
Merged-chr13-58232835-2	chr13	58232327	58233327	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_019832)	TTS (NM_019832)	-17174.0	NM_026842	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	6.29	1.84	3.7	2.7	4.2	4.82	5.28	2.21	3.75
Merged-chrX-155168086-1	chrX	155167586	155168586	+	685.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-20237.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	7.44	15.67	1.85	16.87	20.53	13.66	5.28	3.54	5.0
Merged-chr18-56799868-2	chr18	56799393	56800393	+	685.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 3 of 4)	L1MC1|LINE|L1	92080.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.58	7.83	5.55	5.4	7.0	7.23	5.28	1.33	3.75
Merged-chr12-100022256-3	chr12	100021761	100022761	+	685.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	57762.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	44.62	33.64	36.07	70.85	52.72	54.66	38.02	34.05	31.85
Merged-chr5-117413995-4	chr5	117413429	117414429	+	685.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001312914)	promoter-TSS (NM_001312914)	-73.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	24.03	17.97	20.35	27.66	19.59	26.53	9.51	15.03	6.87
Merged-chr2-51090775-2	chr2	51090297	51091297	+	685.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58314.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	18.88	17.05	12.95	26.31	21.46	13.66	21.12	13.71	5.62
Merged-chr2-71336484-2	chr2	71335974	71336974	+	685.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172436, intron 3 of 17)	intron (NM_172436, intron 3 of 17)	31080.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	2.29	5.07	0.0	4.72	8.86	5.63	12.67	12.38	9.99
Merged-chr7-103861155-1	chr7	103860655	103861655	+	685.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7948.0	NM_008221	15135.0	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	2.86	2.3	1.85	4.72	3.27	0.0	2.11	0.88	3.75
Merged-chr9-69518447-1	chr9	69517947	69518947	+	685.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61503.0	NR_037296	100526560.0		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	8.58	1.38	3.7	5.4	5.13	6.43	4.22	3.1	0.0
Merged-chr5-113221382-1	chr5	113220882	113221882	+	685.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-5527.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	4.0	1.38	0.0	5.4	0.47	4.82	1.06	2.65	1.25
Merged-chr7-128247675-3	chr7	128247175	128248175	+	685.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289553, intron 1 of 9)	intron (NM_001289553, intron 1 of 9)	863.0	NM_001289552	21804.0	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	5.15	2.76	4.62	4.05	0.93	1.61	2.11	1.33	1.25
Merged-chr9-107678291-1	chr9	107677791	107678791	+	685.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008140, intron 1 of 8)	intron (NM_008140, intron 1 of 8)	1301.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.0	2.76	3.7	2.02	4.2	0.8	7.39	0.44	6.25
Merged-chr2-57239206-3	chr2	57238689	57239689	+	685.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 1 of 16)	intron (NM_010274, intron 1 of 16)	807.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	70.36	57.14	32.37	70.85	42.45	39.39	45.42	55.27	27.48
Merged-chr2-79512078-3	chr2	79511579	79512579	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55443.0	NM_010894	18012.0	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	5.15	4.15	1.85	7.42	3.73	5.63	7.39	0.0	5.0
Merged-chr13-107825873-2	chr13	107825379	107826379	+	685.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	64185.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	36.61	27.19	4.62	22.27	20.99	15.27	44.36	50.85	14.99
Merged-chr5-113667565-2	chr5	113667069	113668069	+	685.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17179.0	NM_008153	14747.0	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.58	6.45	14.8	5.4	5.13	11.25	9.51	4.42	8.74
Merged-chr4-133092734-3	chr4	133092221	133093221	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37912.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	17.16	12.9	29.6	12.14	12.13	39.39	27.46	26.53	23.11
Merged-chr9-40482675-2	chr9	40482171	40483171	+	685.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	B1_Mus1|SINE|Alu	-26907.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	26.31	30.87	20.35	31.71	31.72	32.15	8.45	17.69	6.25
Merged-chr3-115704440-2	chr3	115703942	115704942	+	685.233337	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10613.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	2.86	5.53	3.7	6.07	6.06	8.04	8.45	2.65	1.25
Merged-chr11-106463237-3	chr11	106462743	106463743	+	685.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	RSINE1|SINE|B4	24553.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	60.64	58.06	67.52	43.86	26.59	32.96	86.61	80.47	44.97
Merged-chr8-25034767-3	chr8	25034263	25035263	+	685.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081187, intron 3 of 8)	B2_Mm2|SINE|B2	4199.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	1.72	2.3	0.0	4.72	2.33	11.25	1.06	6.19	6.25
Merged-chr11-85506503-3	chr11	85505998	85506998	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138681, intron 15 of 25)	B1_Mur4|SINE|Alu	153334.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	10.3	12.9	1.85	10.8	12.6	27.33	9.51	6.63	14.99
Merged-chr15-97361846-3	chr15	97361351	97362351	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172293, intron 4 of 5)	intron (NM_172293, intron 4 of 5)	-114564.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	90.96	144.23	121.17	176.1	184.27	169.6	158.43	183.5	94.3
Merged-chr18-67457746-3	chr18	67457226	67458226	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7123.0	NM_144867	225655.0	Mm.221420	NM_144867	ENSMUSG00000024530	Prelid3a	A230074A19Rik|BC019561|Slmo1	PRELI domain containing 3A	protein-coding	5.72	5.07	1.85	4.05	1.4	0.0	1.06	2.21	1.25
Merged-chr17-86964211-1	chr17	86963711	86964711	+	685.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145491, intron 1 of 4)	intron (NM_145491, intron 1 of 4)	1100.0	NM_145491	104215.0	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	49.77	42.85	19.42	80.29	45.25	53.85	122.52	76.94	44.97
Merged-chr8-69094322-3	chr8	69093814	69094814	+	685.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	B3A|SINE|B2	-5092.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	22.88	27.19	25.9	29.01	40.12	26.53	46.47	37.58	24.98
Merged-chr11-22002041-2	chr11	22001544	22002544	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011023)	promoter-TSS (NM_011023)	-393.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	6.86	0.92	1.85	0.67	0.47	1.61	2.11	3.1	1.25
Merged-chr19-21942512-2	chr19	21942011	21943011	+	685.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	164171.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	12.59	22.12	9.25	11.47	20.99	16.88	29.57	25.2	22.48
Merged-chr16-91373546-2	chr16	91373039	91374039	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	756.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	295.18	240.99	209.96	293.5	198.73	294.99	304.18	266.63	169.87
Merged-chr4-86904184-2	chr4	86903696	86904696	+	685.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290543, intron 4 of 5)	intron (NM_001290543, intron 4 of 5)	29782.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	5.72	7.83	15.72	11.47	4.2	4.82	4.22	3.54	6.87
Merged-chr1-74124568-3	chr1	74124075	74125075	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027884)	promoter-TSS (NM_027884)	-126.0	NM_001289895	21961.0	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	3.43	2.76	9.25	6.07	2.33	0.0	5.28	1.77	0.0
Merged-chr10-44735936-3	chr10	44735427	44736427	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-277179.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.29	6.45	1.85	10.12	3.27	9.65	5.28	2.65	5.62
Merged-chr10-23812310-3	chr10	23811852	23812852	+	685.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183116, intron 6 of 13)	intron (NM_183116, intron 6 of 13)	15366.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	5.72	3.23	3.7	4.72	2.33	3.22	4.22	1.77	2.5
Merged-chr5-136933397-2	chr5	136932917	136933917	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015555, intron 3 of 3)	(ACGTG)n|Simple_repeat|Simple_repeat	14271.0	NR_015555	66752.0	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	22.31	17.51	10.17	9.45	3.73	19.29	24.29	29.63	9.37
Merged-chr6-47779544-1	chr6	47779044	47780044	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	24108.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	5.15	5.07	5.55	6.07	3.73	9.65	28.52	28.3	21.86
Merged-chr2-112501316-1	chr2	112500816	112501816	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028844, intron 1 of 5)	intron (NM_028844, intron 1 of 5)	8352.0	NM_028844	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	1.14	1.38	5.55	3.37	4.2	4.82	4.22	2.21	1.25
Merged-chr2-155383303-2	chr2	155382787	155383787	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178111, intron 1 of 3)	intron (NM_178111, intron 1 of 3)	1431.0	NM_178111	68728.0	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	34.32	20.74	23.12	23.62	16.79	12.06	42.25	27.86	17.49
Merged-chr19-57197495-1	chr19	57196995	57197995	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290816, exon 1 of 21)	5' UTR (NM_001290816, exon 1 of 21)	136.0	NM_001103177	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	1.72	0.0	5.55	3.37	4.67	3.22	4.22	2.65	9.37
Merged-chr15-96698165-1	chr15	96697665	96698665	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175121, intron 3 of 15)	intron (NM_175121, intron 3 of 15)	1563.0	NM_001355633	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	80.66	111.05	49.02	78.27	106.83	89.22	96.11	115.85	68.7
Merged-chr14-16373979-1	chr14	16373479	16374479	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	8773.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	14.87	11.52	11.1	13.49	13.53	7.23	15.84	11.94	21.23
Merged-chr7-43797282-1	chr7	43796782	43797782	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008940)	promoter-TSS (NM_008940)	-295.0	NM_001324398	259277.0	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	2.86	3.69	7.4	3.37	5.6	0.8	4.22	4.42	1.87
Merged-chr1-53883394-1	chr1	53882894	53883894	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	33970.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	76.08	53.45	28.67	122.12	118.96	89.22	51.75	31.39	46.84
Merged-chr14-87213278-1	chr14	87212778	87213778	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72054.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	3.43	4.15	7.4	8.1	3.73	8.04	1.06	2.21	1.25
Merged-chr6-40446014-1	chr6	40445514	40446514	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201370, intron 2 of 11)	L2c|LINE|L2	3151.0	NM_201370	381759.0	Mm.20593	NM_201370	ENSMUSG00000037159	Wee2	Gm1065|Wee1B	WEE1 homolog 2 (S. pombe)	protein-coding	5.72	3.23	5.55	2.02	1.87	0.0	6.34	0.44	3.12
Merged-chr13-20114551-2	chr13	20114055	20115055	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	24048.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	9.72	5.99	3.7	8.77	5.6	8.04	5.28	3.54	7.49
Merged-chr6-124278394-1	chr6	124277894	124278894	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26257.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	62.35	70.96	84.17	72.87	61.58	106.9	63.37	70.3	40.59
Merged-chr2-73442236-1	chr2	73441736	73442736	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289722, intron 3 of 7)	ORR1G|LTR|ERVL-MaLR	11653.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	1.72	4.15	1.85	7.42	3.73	1.61	7.39	3.54	3.75
Merged-chr7-59984132-1	chr7	59983632	59984632	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_146211, intron 13 of 171)	Lx7|LINE|L1	-5276.0	NR_028529	100217429.0		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	11.44	7.83	11.1	11.47	6.06	16.88	13.73	16.8	15.61
Merged-chr3-109360959-1	chr3	109360459	109361459	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	20276.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	12.59	17.05	24.05	12.82	22.86	35.37	13.73	10.61	9.37
Merged-chr5-20767385-1	chr5	20766885	20767885	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172992, intron 14 of 17)	intron (NM_172992, intron 14 of 17)	114739.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	8.58	5.53	5.55	9.45	3.73	1.61	4.22	5.31	5.0
Merged-chr2-153048311-1	chr2	153047811	153048811	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001011732, intron 1 of 2)	L2b|LINE|L2	16459.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	2.86	1.84	0.0	0.67	2.8	1.61	4.22	0.88	3.75
Merged-chr5-111036383-2	chr5	111035884	111036884	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	32240.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	21.17	12.44	17.57	13.49	7.46	9.65	6.34	4.86	2.5
Merged-chr6-122562699-1	chr6	122562199	122563199	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009645, exon 5 of 5)	3' UTR (NM_009645, exon 5 of 5)	8890.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	6.29	3.69	1.85	6.07	4.2	4.82	2.11	3.1	0.0
Merged-chr9-25253464-1	chr9	25252964	25253964	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359738, intron 1 of 12)	intron (NM_001359738, intron 1 of 12)	572.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	127.0	161.74	158.17	119.43	120.83	122.18	137.3	126.9	114.29
Merged-chr9-50907146-1	chr9	50906646	50907646	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	50222.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	3.43	7.83	9.25	19.57	9.33	12.86	6.34	6.19	13.12
Merged-chr16-20674182-1	chr16	20673682	20674682	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145941, intron 2 of 32)	intron (NM_145941, intron 2 of 32)	1455.0	NM_001304432	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	35.47	22.58	29.6	26.31	14.0	14.47	28.52	13.27	16.24
Merged-chr4-101069715-1	chr4	101069215	101070215	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 1 of 11)	CpG	677.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	15.45	24.42	12.95	18.89	11.2	22.51	11.62	8.84	10.62
Merged-chr12-13498898-1	chr12	13498398	13499398	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 44 of 51)	intron (NM_027706, intron 44 of 51)	128748.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	6.86	4.15	9.25	4.05	4.2	4.82	4.22	2.21	7.49
Merged-chr12-117403771-1	chr12	117403271	117404271	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66759.0	NR_044987	432713.0	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	4.58	5.53	5.55	2.7	4.67	3.22	2.11	1.77	4.37
Merged-chr11-70647987-1	chr11	70647487	70648487	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_024211)	promoter-TSS (NM_024211)	700.0	NM_027445	70510.0	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	49.77	47.92	57.35	41.16	25.19	52.25	61.26	73.84	43.72
Merged-chr9-58903089-1	chr9	58902589	58903589	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001042752, exon 20 of 28)	exon (NM_001042752, exon 20 of 28)	79577.0	NM_001081192	330953.0	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	12.01	12.44	3.7	4.05	3.73	4.82	5.28	5.31	7.49
Merged-chr15-100419720-1	chr15	100419220	100420220	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008732, intron 1 of 16)	B1_Mur4|SINE|Alu	3335.0	NM_001146161	18174.0	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	20.59	17.51	7.4	14.17	2.8	4.02	12.67	11.05	12.49
Merged-chr18-84199397-1	chr18	84198897	84199897	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111239.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	2.86	2.3	5.55	2.7	3.27	2.41	2.11	2.21	2.5
Merged-chr3-123386940-1	chr3	123386440	123387440	+	685.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201638)	promoter-TSS (NM_201638)	-950.0	NM_201638	210529.0	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	7.44	9.22	4.62	14.17	3.73	2.41	34.85	46.43	24.36
Merged-chr10-12548599-1	chr10	12548099	12549099	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	313136.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	2.29	5.53	7.4	9.45	11.2	13.66	4.22	0.44	2.5
Merged-chr6-73748571-1	chr6	73748071	73749071	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-277550.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	1.14	0.92	0.0	6.75	4.67	0.8	2.11	1.33	3.75
Merged-chr5-121721550-2	chr5	121721047	121722047	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009125, intron 1 of 24)	intron (NM_009125, intron 1 of 24)	9938.0	NM_009125	20239.0	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	197.93	176.48	184.99	176.78	132.49	147.9	218.63	275.03	111.17
Merged-chr12-69132146-1	chr12	69131646	69132646	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	27040.0	NM_009093	20090.0	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	1.14	1.38	0.0	1.35	1.87	1.61	4.22	4.42	3.75
Merged-chr16-33261764-1	chr16	33261264	33262264	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080557, intron 1 of 13)	RMER4A|LTR|ERVK	10308.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	4.58	8.75	14.8	15.52	12.6	12.06	17.96	7.52	10.62
Merged-chr1-133679681-1	chr1	133679181	133680181	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172842, exon 6 of 6)	3' UTR (NM_172842, exon 6 of 6)	10335.0	NM_172842	240754.0	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	10.3	5.53	9.25	12.14	7.0	11.25	4.22	3.54	4.37
Merged-chr13-40866600-1	chr13	40866100	40867100	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023887, intron 1 of 2)	RMER16_Mm|LTR|ERVK	6832.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	4.58	5.99	3.7	6.75	8.86	12.86	5.28	3.1	1.25
Merged-chr2-5708287-2	chr2	5707780	5708780	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	6482.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	18.31	15.21	18.5	33.06	9.33	26.53	23.24	20.78	10.62
Merged-chr2-160213273-1	chr2	160212773	160213773	+	685.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114221.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	56.06	60.82	42.55	61.4	50.85	49.03	66.54	63.67	45.59
Merged-chr13-113352748-2	chr13	113352247	113353247	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	143088.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	8.58	6.45	5.55	10.12	7.46	6.43	6.34	6.19	3.75
Merged-chr7-92893706-3	chr7	92893202	92894202	+	685.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028243, intron 1 of 8)	B2_Mm2|SINE|B2	18449.0	NM_028243	72461.0	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	8.58	7.37	3.7	6.75	3.73	0.0	9.51	11.5	1.25
Merged-chr2-91138768-3	chr2	91138281	91139281	+	684.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177719, intron 33 of 34)	intron (NM_001177719, intron 33 of 34)	20637.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	24.03	27.65	17.57	16.87	17.73	18.49	19.01	13.27	9.99
Merged-chr4-125125800-3	chr4	125125269	125126269	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153159, intron 2 of 5)	intron (NM_153159, intron 2 of 5)	2112.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	139.58	162.66	106.37	126.85	83.51	126.19	173.21	174.66	88.06
Merged-chr1-167000765-3	chr1	167000277	167001277	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175461)	promoter-TSS (NM_175461)	-640.0	NM_175461	226610.0	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	6.29	1.84	1.85	2.7	1.87	1.61	5.28	1.77	0.0
Merged-chrX-36899158-3	chrX	36898659	36899659	+	684.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029891, intron 1 of 2)	B2_Mm2|SINE|B2	3740.0	NM_029891	77286.0	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	2.86	1.38	0.0	4.72	0.93	0.0	1.06	0.44	2.5
Merged-chr12-112543103-3	chr12	112542590	112543590	+	684.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31930.0	NM_178915	104885.0	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	1.14	2.3	1.85	10.12	1.87	3.22	4.22	1.33	0.0
Merged-chr1-128549678-3	chr1	128549174	128550174	+	684.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	42625.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.72	2.3	3.7	5.4	4.67	0.0	6.34	5.75	11.24
Merged-chr16-85064979-2	chr16	85064474	85065474	+	684.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 5 of 15)	intron (NM_001198825, intron 5 of 15)	92763.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.29	7.37	1.85	7.42	4.2	6.43	5.28	4.42	4.37
Merged-chr2-174069817-3	chr2	174069302	174070302	+	684.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7249.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	18.88	13.36	15.72	25.64	8.86	11.25	14.79	11.5	15.61
Merged-chr11-118494694-2	chr11	118494201	118495201	+	684.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024931, intron 13 of 14)	intron (NM_001024931, intron 13 of 14)	17869.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	55.49	39.63	33.3	64.77	43.85	73.95	47.53	45.99	28.1
Merged-chr3-88939951-3	chr3	88939463	88940463	+	684.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164533, intron 2 of 11)	B3|SINE|B2	10319.0	NM_022994	65111.0	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	10.3	1.38	1.85	8.1	4.2	12.06	8.45	6.19	6.25
Merged-chr14-25412325-3	chr14	25411846	25412846	+	684.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46839.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	6.29	16.13	14.8	12.82	8.4	10.45	10.56	6.63	3.75
Merged-chr3-103735216-3	chr3	103734624	103735624	+	684.817444	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133859)	TTS (NM_133859)	2877.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	5.15	3.69	1.85	8.1	9.8	16.08	28.52	23.88	14.99
Merged-chr10-60341376-2	chr10	60340895	60341895	+	684.8000490000001	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252635, intron 37 of 68)	MTEb|LTR|ERVL-MaLR	-5456.0	NM_001159572	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	20.02	5.53	3.7	20.92	9.33	12.06	9.51	4.42	5.62
Merged-chr11-3127221-1	chr11	3126721	3127721	+	684.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003517, intron 2 of 6)	intron (NR_003517, intron 2 of 6)	3200.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	50.34	50.23	50.87	51.28	61.11	100.47	27.46	7.52	66.82
Merged-chr11-101260608-2	chr11	101260169	101261169	+	684.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175638, exon 1 of 19)	5' UTR (NM_175638, exon 1 of 19)	102.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	3.43	5.53	9.25	2.7	0.93	6.43	3.17	1.33	0.0
Merged-chr10-60280537-2	chr10	60280046	60281046	+	684.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011179, intron 1 of 14)	intron (NM_011179, intron 1 of 14)	2918.0	NM_001146121	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	106.97	107.82	108.22	126.17	105.9	130.21	198.56	255.57	88.68
Merged-chr10-81395396-2	chr10	81394898	81395898	+	684.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008688)	TTS (NM_008688)	2334.0	NM_001099917	72273.0	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	4.0	5.99	8.32	3.37	2.8	4.82	5.28	4.42	8.12
Merged-chr17-83872949-3	chr17	83872471	83873471	+	684.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18553.0	NR_155491	320021.0	Mm.379475	NR_155490		C430042M11Rik	-	RIKEN cDNA C430042M11 gene	ncRNA	0.57	3.69	5.55	2.02	2.8	0.0	0.0	3.1	2.5
Merged-chr16-4608018-3	chr16	4607527	4608527	+	684.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	13314.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	13.73	3.69	3.7	5.4	0.93	1.61	2.11	1.33	0.62
Merged-chr1-179832969-3	chr1	179832496	179833496	+	684.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-28981.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	10.3	3.23	1.85	9.45	1.4	4.82	8.45	6.19	1.25
Merged-chr2-31130934-2	chr2	31130440	31131440	+	684.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	intron (NM_001355105, intron 1 of 15)	11068.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	24.6	34.56	21.27	20.24	9.8	26.53	12.67	11.05	31.23
Merged-chr3-105824406-2	chr3	105823923	105824923	+	684.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8856.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	65.79	56.68	45.32	64.77	26.59	45.82	89.78	87.99	29.35
Merged-chr8-39338096-2	chr8	39337591	39338591	+	684.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_044988, intron 2 of 3)	L1_Mus3|LINE|L1	40111.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	5.15	5.99	5.55	1.35	2.8	5.63	1.06	3.54	2.5
Merged-chr9-103233206-2	chr9	103232710	103233710	+	684.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2924.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	14.87	8.75	24.97	17.54	13.06	21.7	13.73	13.71	24.36
Merged-chr4-48681129-3	chr4	48680644	48681644	+	684.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17630.0	NM_026509	68016.0	Mm.133444	NM_026509	ENSMUSG00000028348	Cavin4	2310039E09Rik|Murc	caveolae associated 4	protein-coding	2.29	6.45	0.0	1.35	1.4	0.0	0.0	1.33	2.5
Merged-chr17-81016024-2	chr17	81015546	81016546	+	684.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49039.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	6.29	4.15	1.85	4.05	2.33	9.65	4.22	1.77	6.25
Merged-chr8-105614079-3	chr8	105613578	105614578	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	CpG	-1388.0	NR_035492	100316712.0		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	13.73	6.45	7.4	9.45	3.73	4.82	7.39	5.31	8.74
Merged-chr9-69454115-3	chr9	69453618	69454618	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007585, intron 1 of 12)	CpG	435.0	NM_007585	12306.0	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	30.89	31.33	16.65	42.51	36.85	36.97	19.01	12.82	16.86
Merged-chr16-30969436-3	chr16	30968959	30969959	+	684.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	111973.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	17.16	14.28	3.7	19.57	24.72	24.92	15.84	8.84	19.36
Merged-chrX-151062119-1	chrX	151061619	151062619	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008001, intron 1 of 17)	intron (NM_008001, intron 1 of 17)	14949.0	NM_008001	14163.0	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	2.86	1.84	0.0	1.35	0.93	0.0	2.11	0.88	1.25
Merged-chr4-139287647-1	chr4	139287147	139288147	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 7 of 9)	intron (NM_001037761, intron 7 of 9)	23061.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	7.44	4.61	2.77	9.45	4.67	12.06	6.34	1.77	11.24
Merged-chr5-67394129-1	chr5	67393629	67394629	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164806, exon 5 of 5)	3' UTR (NM_001164806, exon 5 of 5)	33670.0	NM_001164806	666938.0	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	3.43	0.92	0.0	2.02	8.4	6.43	2.11	1.77	3.75
Merged-chr1-86339625-1	chr1	86339125	86340125	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11660.0	NR_028478	100303740.0	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	5.72	5.07	0.0	0.67	0.47	2.41	0.0	1.77	2.5
Merged-chr17-24529274-1	chr17	24528774	24529774	+	684.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045289)	TTS (NR_045289)	1023.0	NR_045289	75614.0	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	14.3	9.22	11.1	14.84	4.2	11.25	19.01	11.94	11.87
Merged-chr6-125587277-1	chr6	125586777	125587777	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 6 of 51)	intron (NM_011708, intron 6 of 51)	34329.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	5.72	3.23	9.25	8.1	0.93	3.22	7.39	5.75	6.87
Merged-chr5-123068048-1	chr5	123067548	123068548	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8227.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	7.44	3.23	1.85	8.1	6.53	6.43	2.11	2.21	3.12
Merged-chrX-161537486-1	chrX	161536986	161537986	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-179550.0	NM_001103367	24004.0	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	7.44	10.14	3.7	5.4	9.33	3.22	8.45	9.29	14.36
Merged-chr3-146914996-1	chr3	146914496	146915496	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302957, intron 9 of 21)	intron (NM_001302957, intron 9 of 21)	62629.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.0	3.69	0.0	5.4	3.27	0.0	1.06	2.21	1.25
Merged-chr7-99947601-1	chr7	99947101	99948101	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 2 of 5)	intron (NM_175388, intron 2 of 5)	32857.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	13.73	11.06	15.72	10.12	7.93	9.65	9.51	5.31	9.99
Merged-chr13-110953468-2	chr13	110952962	110953962	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-49616.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	8.01	4.15	1.85	2.02	2.8	4.82	7.39	6.63	1.25
Merged-chr19-34386677-2	chr19	34386183	34387183	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88452.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	7.44	8.75	11.1	6.75	2.8	8.84	2.11	7.07	9.99
Merged-chr10-94190346-1	chr10	94189846	94190846	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011629, intron 11 of 13)	(TTTTTG)n|Simple_repeat|Simple_repeat	-8663.0	NM_025551	66414.0	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	4.58	3.69	5.55	10.12	8.86	8.04	4.22	2.65	6.25
Merged-chr12-54874950-2	chr12	54874444	54875444	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12067.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	7.44	2.76	3.7	5.4	4.67	0.0	4.22	2.21	3.75
Merged-chr2-148575660-2	chr2	148575162	148576162	+	684.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96953.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	7.44	11.52	0.0	4.05	4.2	9.65	6.34	5.75	5.62
Merged-chr17-34960100-1	chr17	34959600	34960600	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_010478)	promoter-TSS (NM_010478)	-862.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	117.27	125.79	110.07	120.1	112.43	116.55	123.57	155.2	76.19
Merged-chr13-107885179-2	chr13	107884683	107885683	+	684.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	4881.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	17.73	5.99	8.32	13.49	8.4	6.43	17.96	10.61	6.87
Merged-chr10-94020774-1	chr10	94020274	94021274	+	684.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304720, intron 1 of 11)	intron (NM_001304720, intron 1 of 11)	14968.0	NM_001304720	215008.0	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	9.15	20.74	6.47	20.24	21.46	12.86	32.74	53.94	25.61
Merged-chr14-27045236-3	chr14	27044727	27045727	+	684.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134437, intron 1 of 12)	intron (NM_134437, intron 1 of 12)	6226.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	6.29	2.3	0.0	4.72	0.0	2.41	4.22	2.21	0.0
Merged-chr2-75781246-3	chr2	75780722	75781722	+	684.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-50955.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	4.0	5.99	1.85	2.7	1.87	1.61	10.56	14.59	1.25
Merged-chr15-78859904-3	chr15	78859390	78860390	+	684.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4361.0	NM_025622	107753.0	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	28.03	19.35	17.57	23.62	16.33	20.9	33.8	22.99	24.98
Merged-chr11-22952877-2	chr11	22952383	22953383	+	684.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-19122.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	5.15	7.37	10.17	8.1	7.93	14.47	10.56	5.31	14.99
Merged-chr6-65143617-2	chr6	65143125	65144125	+	684.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1105.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	129.86	163.12	66.6	170.03	171.68	55.46	116.18	136.63	27.48
Merged-chr13-45883109-2	chr13	45882594	45883594	+	684.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	81897.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	12.59	3.69	7.4	6.07	7.93	7.23	1.06	3.54	5.0
Merged-chr1-52815848-2	chr1	52815352	52816352	+	684.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008384, intron 1 of 5)	intron (NM_008384, intron 1 of 5)	1836.0	NM_008384	16329.0	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	3.43	4.15	1.85	2.7	4.67	1.61	5.28	3.54	3.75
Merged-chr11-3998150-2	chr11	3997634	3998634	+	684.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001177703, exon 3 of 3)	exon (NM_001177703, exon 3 of 3)	8201.0	NM_001177691	53897.0	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	2.86	1.84	1.85	2.02	2.8	0.8	4.22	2.65	5.0
Merged-chr10-96624660-3	chr10	96624150	96625150	+	684.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7649.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	13.16	5.53	0.0	3.37	6.06	3.22	4.22	4.86	3.12
Merged-chr1-134083115-2	chr1	134082617	134083617	+	684.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3962.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	36.61	28.57	49.95	37.11	35.45	50.64	46.47	24.76	35.6
Merged-chr9-103184039-2	chr9	103183538	103184538	+	684.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173781, exon 8 of 8)	3' UTR (NM_173781, exon 8 of 8)	18027.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	5.72	1.84	1.85	2.7	5.6	6.43	12.67	2.21	5.0
Merged-chr13-28606861-3	chr13	28606345	28607345	+	684.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	L1MB7|LINE|L1	104028.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	17.16	17.05	9.25	24.96	17.26	12.86	21.12	16.36	17.49
Merged-chr2-52471690-2	chr2	52471183	52472183	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 4 of 13)	intron (NM_001037099, intron 4 of 13)	-46809.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	4.0	7.37	1.85	4.05	6.53	3.22	4.22	3.98	7.49
Merged-chr10-61211904-2	chr10	61211403	61212403	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081127, intron 14 of 21)	intron (NM_001081127, intron 14 of 21)	36641.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	5.72	2.3	1.85	0.67	2.8	1.61	3.17	3.98	6.87
Merged-chr7-19940013-2	chr7	19939503	19940503	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027308, intron 3 of 4)	RLTR26B_MM|LTR|ERVK	10740.0	NM_027308	70080.0	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	4.58	3.23	3.7	13.49	2.33	5.63	2.11	0.88	2.5
Merged-chr10-8323388-2	chr10	8322890	8323890	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 3 of 7)	intron (NM_177387, intron 3 of 7)	195435.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.86	2.76	3.7	6.75	1.4	4.82	9.51	4.42	1.25
Merged-chr7-109479248-2	chr7	109478746	109479746	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170913, intron 7 of 19)	intron (NM_001170913, intron 7 of 19)	14492.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	12.59	7.37	19.42	5.4	6.53	4.82	11.62	2.21	13.74
Merged-chr19-32087844-2	chr19	32087327	32088327	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018830, intron 2 of 23)	L1_Mur3|LINE|L1	15313.0	NM_018830	54447.0	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	4.0	9.22	7.4	3.37	7.0	4.82	2.11	1.77	1.25
Merged-chr11-64517045-2	chr11	64516574	64517574	+	684.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-80400.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	37.18	38.71	12.95	9.45	11.66	3.22	25.35	29.63	28.73
Merged-chr19-28835086-1	chr19	28834586	28835586	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009199)	promoter-TSS (NM_009199)	-80.0	NM_009199	20510.0	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	2.29	2.76	0.0	6.75	1.87	3.22	6.34	2.21	2.5
Merged-chr9-37177302-2	chr9	37176799	37177799	+	684.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29977.0	NM_001029838	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	5.72	2.3	8.32	2.7	1.4	0.0	4.22	0.88	1.25
Merged-chr3-95673340-3	chr3	95672828	95673828	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14589.0	NM_144899	229595.0	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	102.97	111.51	110.07	118.75	86.3	122.18	137.3	172.89	93.05
Merged-chr9-22129723-3	chr9	22129233	22130233	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001102404, intron 2 of 4)	intron (NM_001102404, intron 2 of 4)	865.0	NM_007388	11433.0	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	45.76	43.77	42.55	26.31	31.26	40.99	45.42	40.24	26.23
Merged-chr6-89628199-3	chr6	89627647	89628647	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15841.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	4.0	5.07	1.85	4.05	7.0	4.82	6.34	0.44	8.74
Merged-chr6-92067364-3	chr6	92066813	92067813	+	684.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172731, intron 14 of 20)	intron (NM_172731, intron 14 of 20)	-24105.0	NM_011630	22026.0	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	4.0	2.3	0.0	4.05	2.33	1.61	3.17	0.88	2.5
Merged-chr10-18056133-2	chr10	18055653	18056653	+	684.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009048, intron 1 of 19)	CpG	213.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	48.05	39.63	44.4	64.77	39.19	54.66	72.88	26.53	30.6
Merged-chr16-23283196-2	chr16	23282687	23283687	+	684.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252505, intron 2 of 7)	MTB_Mm|LTR|ERVL-MaLR	-7283.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	17.73	16.13	0.0	24.29	20.99	29.74	13.73	18.57	14.36
Merged-chr4-40147707-2	chr4	40147207	40148207	+	684.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	ORR1C1|LTR|ERVL-MaLR	4442.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	40.62	45.62	64.75	37.78	34.06	72.34	88.72	45.99	40.59
Merged-chr16-33346677-3	chr16	33346104	33347104	+	684.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	34132.0	NR_045709	100502742.0	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	115.55	112.43	74.0	64.1	55.05	54.66	129.91	132.65	58.08
Merged-chr8-116636114-3	chr8	116635615	116636615	+	684.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029441, intron 1 of 6)	L1MC3|LINE|L1	96876.0	NM_029441	75796.0	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	18.31	14.28	12.95	8.1	2.8	8.84	17.96	15.92	5.0
Merged-chr18-73762526-2	chr18	73762029	73763029	+	684.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8050.0	NM_053255	114615.0	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	6.29	0.46	5.55	2.7	1.87	0.8	2.11	2.21	5.0
Merged-chr12-100732035-3	chr12	100731554	100732554	+	684.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6934.0	NM_153587	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	9.15	14.28	27.75	8.77	8.86	11.25	11.62	10.61	13.74
Merged-chr5-98348825-1	chr5	98348325	98349325	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 2 of 5)	intron (NM_001024614, intron 2 of 5)	19521.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	4.58	2.3	5.55	2.7	7.0	3.22	3.17	3.1	0.0
Merged-chr4-132621859-1	chr4	132621359	132622359	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-17187.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	2.29	7.37	8.32	5.4	7.93	12.06	8.45	1.33	9.99
Merged-chr2-103557458-2	chr2	103556957	103557957	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8853.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	8.01	1.84	2.77	2.7	3.73	1.61	4.22	0.44	5.0
Merged-chr1-13363827-1	chr1	13363327	13364327	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	8602.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.72	1.84	9.25	8.77	6.53	6.43	5.28	4.42	3.75
Merged-chr11-8561057-1	chr11	8560557	8561557	+	684.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	103478.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.29	2.76	1.85	5.4	3.73	11.25	5.28	2.65	5.0
Merged-chr4-56059535-1	chr4	56059035	56060035	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-527060.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	43.48	35.94	23.12	16.87	22.86	25.72	67.6	65.44	34.97
Merged-chr12-12274533-1	chr12	12274033	12275033	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	12394.0	NM_001146119	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	21.74	20.74	19.42	21.59	12.13	18.49	19.01	16.36	19.98
Merged-chr16-35754124-2	chr16	35753607	35754607	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	intron (NM_153550, intron 1 of 8)	15249.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	9.15	11.98	20.35	19.57	14.0	24.11	20.07	12.38	30.6
Merged-chr19-6097995-2	chr19	6097482	6098482	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001362427, exon 6 of 6)	exon (NM_001362427, exon 6 of 6)	3563.0	NM_001362427	225852.0	Mm.301487	NM_001362427		Gm550	-	predicted gene 550	protein-coding	39.47	26.26	24.05	10.8	3.27	8.84	13.73	10.61	5.62
Merged-chr5-44075648-2	chr5	44075164	44076164	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163578, intron 1 of 22)	intron (NM_001163578, intron 1 of 22)	19104.0	NM_001163581	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.72	3.69	3.7	2.7	2.8	1.61	4.22	1.33	5.0
Merged-chr14-70432527-1	chr14	70432027	70433027	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3433.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	10.3	11.98	11.1	4.72	6.06	13.66	10.56	5.31	12.49
Merged-chr7-132589752-1	chr7	132589252	132590252	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9885.0	NM_009123	20231.0	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 homeobox 2	protein-coding	4.0	0.92	1.85	4.05	1.87	3.22	3.17	1.77	1.25
Merged-chr1-153969357-1	chr1	153968857	153969857	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	69428.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	5.72	5.07	4.62	6.75	1.4	5.63	7.39	3.98	6.25
Merged-chr17-44239532-1	chr17	44239032	44240032	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 2 of 5)	intron (NM_172621, intron 2 of 5)	50960.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	10.87	16.13	12.02	13.49	7.0	12.06	1.06	2.65	3.75
Merged-chr17-56754791-3	chr17	56754288	56755288	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008738, intron 1 of 2)	intron (NM_008738, intron 1 of 2)	2760.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	3.43	2.76	1.85	4.72	0.93	0.0	9.51	0.88	2.5
Merged-chr18-54832034-2	chr18	54831536	54832536	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	158144.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	24.03	17.51	20.35	7.42	13.06	15.27	26.4	28.3	14.99
Merged-chr8-104115065-1	chr8	104114565	104115565	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009868, intron 2 of 11)	MTE-int|LTR|ERVL-MaLR	-9192.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	29.75	36.86	42.55	16.19	25.66	40.99	65.48	47.75	33.1
Merged-chr4-99019700-1	chr4	99019200	99020200	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026082, intron 16 of 47)	intron (NM_026082, intron 16 of 47)	-11254.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	10.3	6.45	12.02	2.7	5.13	4.82	5.28	9.73	0.0
Merged-chr14-104029796-1	chr14	104029296	104030296	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2654.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	6.29	2.76	4.62	5.4	7.46	5.63	3.17	1.33	0.0
Merged-chr5-8807756-1	chr5	8807256	8808256	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 4 of 27)	RLTR20B2|LTR|ERVK	-9233.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	4.58	9.22	1.85	23.62	13.53	16.08	7.39	4.86	4.37
Merged-chr10-62243072-1	chr10	62242572	62243572	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9366.0	NM_009314	21337.0	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	1.72	2.3	0.0	2.7	0.0	0.0	1.06	1.33	2.5
Merged-chr5-122280322-1	chr5	122279822	122280822	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4076.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	33.18	38.25	30.52	39.13	34.06	32.15	29.57	40.68	26.23
Merged-chr5-30864045-1	chr5	30863545	30864545	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2238.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	5.72	4.15	6.47	6.75	11.2	8.04	4.22	6.19	3.12
Merged-chr3-144701951-1	chr3	144701451	144702451	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282037, intron 5 of 10)	intron (NM_001282037, intron 5 of 10)	18384.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	20.02	40.55	34.22	26.99	34.52	54.66	62.31	44.66	47.46
Merged-chr5-99217521-1	chr5	99217021	99218021	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145839, exon 14 of 14)	3' UTR (NM_145839, exon 14 of 14)	35406.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	29.17	19.81	31.45	18.22	9.8	16.88	13.73	12.82	18.74
Merged-chr2-13278277-1	chr2	13277777	13278777	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 66 of 66)	intron (NM_001081084, intron 66 of 66)	-6862.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.0	6.91	1.85	10.12	2.8	2.41	1.06	3.54	7.49
Merged-chr2-128414946-3	chr2	128414429	128415429	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	14422.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	26.89	30.41	20.35	31.04	25.66	23.31	43.3	28.3	28.1
Merged-chr17-30197779-1	chr17	30197279	30198279	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 5 of 5)	intron (NM_001356265, intron 5 of 5)	192740.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	13.73	11.52	15.72	23.62	16.79	8.04	15.84	3.54	3.75
Merged-chr2-73372184-1	chr2	73371684	73372684	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 4 of 15)	intron (NM_001276444, intron 4 of 15)	14296.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	38.9	47.92	29.6	61.4	75.11	65.11	58.09	80.92	38.72
Merged-chr9-66305414-3	chr9	66304928	66305928	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45022.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	47.48	69.58	35.15	44.53	56.45	40.19	43.3	54.39	34.97
Merged-chr10-128186131-3	chr10	128185619	128186619	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5822.0	NM_001039080	56516.0	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	8.01	1.38	1.85	8.77	2.33	0.0	3.17	0.44	1.25
Merged-chr9-50452158-1	chr9	50451658	50452658	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42367.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	10.87	10.14	14.8	16.87	3.73	5.63	29.57	18.57	6.25
Merged-chr3-28103773-1	chr3	28103273	28104273	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 20 of 25)	intron (NM_008875, intron 20 of 25)	119602.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	2.86	9.68	11.1	8.1	7.0	2.41	6.34	14.15	13.12
Merged-chr1-45912929-1	chr1	45912429	45913429	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016917, intron 5 of 7)	URR1A|DNA|hAT-Charlie	12665.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	48.05	60.36	24.97	54.65	34.52	54.66	62.31	57.48	46.22
Merged-chr11-120631677-1	chr11	120631177	120632177	+	684.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010756, intron 1 of 2)	intron (NM_010756, intron 1 of 2)	1870.0	NM_010756	17134.0	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	82.38	74.65	87.87	76.92	55.51	62.7	99.28	85.34	67.45
Merged-chr16-55830927-1	chr16	55830427	55831427	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030612, intron 2 of 13)	MLT1B|LTR|ERVL-MaLR	7714.0	NM_030612	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	1.72	3.69	1.85	1.35	5.6	4.82	2.11	3.98	3.75
Merged-chr6-30176293-1	chr6	30175793	30176793	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038124)	promoter-TSS (NR_038124)	-330.0	NR_038124	100463519.0	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	5.72	0.92	3.7	4.05	0.93	1.61	2.11	1.77	2.5
Merged-chr11-106146499-2	chr11	106145994	106146994	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 8 of 15)	(T)n|Simple_repeat|Simple_repeat	13433.0	NM_001356459	67803.0	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	13.73	14.28	4.62	6.07	6.06	15.27	7.39	11.05	18.74
Merged-chr11-60937889-1	chr11	60937389	60938389	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008928, intron 1 of 11)	intron (NM_008928, intron 1 of 11)	5832.0	NM_008928	26397.0	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	6.29	11.52	12.95	6.75	6.53	6.43	7.39	6.19	8.74
Merged-chr12-17259585-1	chr12	17259085	17260085	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7010.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.57	3.23	12.02	4.05	2.8	3.22	1.06	3.54	3.75
Merged-chr4-150048594-1	chr4	150048094	150049094	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19860.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	6.29	2.76	5.55	6.07	8.4	3.22	12.67	11.94	5.0
Merged-chr1-177338882-2	chr1	177338411	177339411	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90144.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	19.45	9.22	10.17	12.14	11.2	16.88	13.73	8.84	11.24
Merged-chr2-132602801-2	chr2	132602305	132603305	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	MTD|LTR|ERVL-MaLR	4609.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	50.34	66.81	39.77	70.85	31.26	56.27	42.25	34.49	43.72
Merged-chrX-20425984-1	chrX	20425484	20426484	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199317, intron 1 of 12)	CpG	296.0	NM_001289684	382207.0	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	28.6	21.2	27.75	30.36	22.86	32.15	29.57	11.5	22.48
Merged-chr6-38943239-1	chr6	38942739	38943739	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	ORR1D2|LTR|ERVL-MaLR	24253.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	16.59	17.51	12.02	13.49	8.4	8.84	25.35	23.43	17.49
Merged-chr1-181077555-1	chr1	181077055	181078055	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26318.0	NM_001033819	619326.0	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.0	4.15	0.0	3.37	5.6	1.61	2.11	1.77	1.25
Merged-chr1-80636429-2	chr1	80635948	80636948	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	28904.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	72.08	89.85	39.77	99.86	57.38	80.38	80.27	81.36	53.71
Merged-chr1-180881942-1	chr1	180881442	180882442	+	684.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11166.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	8.01	8.29	11.1	8.1	1.87	6.43	7.39	5.31	6.87
Merged-chrX-139685513-1	chrX	139685013	139686013	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081499, intron 1 of 20)	intron (NM_001081499, intron 1 of 20)	517.0	NM_001081499	245638.0	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	14.87	17.05	3.7	14.17	8.4	19.29	16.9	16.36	7.49
Merged-chr15-61986519-1	chr15	61986019	61987019	+	684.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177353, intron 1 of 2)	CpG	1178.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	127.0	130.4	110.99	141.69	129.69	149.5	148.92	151.66	93.68
Merged-chr11-29807574-3	chr11	29807088	29808088	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 17 of 41)	intron (NM_146016, intron 17 of 41)	18080.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	24.03	26.73	21.27	37.11	32.19	22.51	39.08	35.37	31.23
Merged-chr18-5986598-3	chr18	5986106	5987106	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	149492.0	NM_029277	75415.0	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	12.59	13.82	1.85	24.96	15.86	24.92	16.9	7.52	5.62
Merged-chr16-44989257-3	chr16	44988759	44989759	+	683.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45581.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	9.72	9.22	14.8	31.71	16.79	14.47	9.51	4.42	14.99
Merged-chr1-191643127-3	chr1	191642628	191643628	+	683.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67492.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	4.0	5.07	0.0	2.02	3.73	3.22	4.22	3.98	3.75
Merged-chr19-9924734-2	chr19	9924220	9925220	+	683.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25187.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	10.87	7.37	7.4	23.62	16.79	9.65	41.19	34.49	18.74
Merged-chr8-95137908-2	chr8	95137408	95138408	+	683.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145831, intron 1 of 21)	intron (NM_001145831, intron 1 of 21)	4632.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	22.88	18.89	24.97	11.47	7.0	24.11	11.62	11.5	13.12
Merged-chr2-50670547-2	chr2	50670054	50671054	+	683.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-239130.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	14.3	13.82	18.5	15.52	8.86	16.08	10.56	3.1	6.25
Merged-chr9-100520748-2	chr9	100520231	100521231	+	683.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	intron (NM_010878, intron 1 of 3)	-13875.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	10.87	13.82	8.32	12.14	7.93	21.7	13.73	6.19	13.74
Merged-chr9-65534724-2	chr9	65534198	65535198	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45389.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	373.55	328.08	224.76	352.2	227.66	199.34	246.09	296.25	116.16
Merged-chr8-34765884-2	chr8	34765385	34766385	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER34A1|LTR|ERV1	-41725.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.58	1.84	14.8	3.37	2.8	0.0	11.62	3.98	3.12
Merged-chr9-45547220-2	chr9	45546720	45547720	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-115988.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	9.15	10.14	1.85	6.07	4.2	4.82	19.01	21.22	12.49
Merged-chr11-64491240-2	chr11	64490742	64491742	+	683.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-54568.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	9.15	9.22	1.85	7.42	9.33	7.23	7.39	7.96	1.25
Merged-chrX-47992847-1	chrX	47992347	47993347	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42006.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	3.43	2.76	5.55	5.4	0.0	0.0	2.11	1.77	0.0
Merged-chr2-116065763-2	chr2	116065266	116066266	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159568)	promoter-TSS (NM_001159568)	-708.0	NM_010825	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	2.29	0.0	5.55	4.72	0.0	0.0	4.22	0.44	0.0
Merged-chr1-172000834-2	chr1	172000331	172001331	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033509)	TTS (NM_033509)	26464.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	12.59	2.3	7.4	3.37	2.33	1.61	1.06	4.86	2.5
Merged-chr8-117853641-2	chr8	117853149	117854149	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-51675.0	NM_001357232	68533.0	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	3.43	0.46	3.7	7.42	1.4	1.61	5.28	1.33	1.25
Merged-chr7-100731226-2	chr7	100730740	100731740	+	683.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	24605.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	9.72	11.06	7.4	12.82	6.06	4.82	9.51	5.75	2.5
Merged-chr5-72793857-2	chr5	72793357	72794357	+	683.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 3 of 17)	intron (NM_013689, intron 3 of 17)	-41080.0	NM_001122754	22165.0	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	14.3	11.06	24.05	26.31	17.26	23.31	11.62	3.1	9.99
Merged-chr8-35429186-2	chr8	35428675	35429675	+	683.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53434.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	10.87	4.61	3.7	7.42	5.6	0.8	10.56	4.42	3.75
Merged-chr4-6514971-3	chr4	6514480	6515480	+	683.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60709.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	6.29	2.3	1.85	0.67	2.8	1.61	5.28	1.77	0.62
Merged-chr5-124351318-1	chr5	124350818	124351818	+	683.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	3310.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	1.72	3.23	8.32	4.05	0.93	9.65	2.11	0.88	10.62
Merged-chr2-173186520-2	chr2	173185994	173186994	+	683.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32428.0	NM_021394	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	2.29	0.46	1.85	1.35	0.93	3.22	2.11	1.33	3.75
Merged-chr17-66221417-3	chr17	66220904	66221904	+	683.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	97884.0	NM_001348292	320209.0	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	8.01	12.44	21.27	6.75	9.8	13.66	16.9	9.29	6.87
Merged-chr8-84871614-3	chr8	84871110	84872110	+	683.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027954)	promoter-TSS (NM_027954)	-501.0	NR_031759	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	85.81	93.08	57.35	84.34	96.1	79.58	95.06	86.66	42.47
Merged-chr14-61698898-2	chr14	61698413	61699413	+	683.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16540.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	30.89	25.34	5.55	14.17	11.2	11.25	27.46	17.69	24.98
Merged-chr17-69223319-3	chr17	69222828	69223828	+	683.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	53878.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	116.13	127.64	75.85	116.73	105.43	106.1	137.3	143.7	72.45
Merged-chr4-47050402-2	chr4	47049888	47050888	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024136, intron 1 of 14)	intron (NM_001024136, intron 1 of 14)	6918.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0.57	1.38	1.85	2.7	0.47	2.41	3.17	0.0	0.0
Merged-chr15-13173180-2	chr15	13172663	13173663	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	CpG	512.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.29	3.23	6.47	4.05	2.8	0.0	3.17	1.33	2.5
Merged-chr12-35039249-1	chr12	35038749	35039749	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7940.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	178.48	281.08	162.79	147.76	178.67	146.29	137.3	204.72	99.92
Merged-chr15-68377930-2	chr15	68377429	68378429	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36640.0	NR_029718	387228.0		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	7.44	6.45	3.7	2.02	4.67	3.22	3.17	2.65	0.62
Merged-chr18-49756396-2	chr18	49755905	49756905	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170960)	promoter-TSS (NM_001170960)	-804.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	79.52	102.29	84.17	78.27	104.5	91.63	99.28	157.85	88.06
Merged-chr2-4560711-2	chr2	4560191	4561191	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 1 of 11)	intron (NM_001177844, intron 1 of 11)	937.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	42.33	52.53	59.2	68.15	48.98	61.89	114.07	115.85	61.83
Merged-chr19-17124579-2	chr19	17124095	17125095	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 8 of 19)	intron (NM_181348, intron 8 of 19)	168477.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	21.74	17.97	24.97	20.24	12.6	20.09	23.24	15.48	5.0
Merged-chr4-125059253-2	chr4	125058768	125059768	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175223, intron 4 of 5)	intron (NM_175223, intron 4 of 5)	6389.0	NM_175223	75563.0	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	6.29	3.69	5.55	2.7	1.87	3.22	2.11	2.65	0.62
Merged-chr2-172399449-1	chr2	172398949	172399949	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080820, intron 1 of 6)	intron (NM_001080820, intron 1 of 6)	5655.0	NM_001276423	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	22.31	10.6	0.0	19.57	8.4	4.82	12.67	12.38	12.49
Merged-chr15-8722643-3	chr15	8722134	8723134	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11827.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	26.89	14.28	16.65	8.77	5.6	8.84	28.52	24.76	16.24
Merged-chr19-10692520-2	chr19	10692023	10693023	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	3788.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	88.1	107.36	60.12	50.6	34.99	57.07	45.42	47.31	55.58
Merged-chr4-97754496-2	chr4	97754006	97755006	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-23120.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	29.75	50.69	58.27	24.29	20.06	26.53	63.37	61.46	27.48
Merged-chr2-119360025-2	chr2	119359536	119360536	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8794.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	28.03	47.46	50.87	20.24	27.52	36.17	5.28	3.1	8.74
Merged-chr2-127889613-2	chr2	127889096	127890096	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028765, intron 8 of 17)	intron (NM_028765, intron 8 of 17)	34968.0	NM_028765	74121.0	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	3.43	3.69	0.0	0.0	0.0	1.61	2.11	2.65	6.25
Merged-chr13-41597681-1	chr13	41597181	41598181	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-8535.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	29.17	42.39	35.15	16.19	25.19	37.78	20.07	25.2	28.1
Merged-chr4-41356953-2	chr4	41356451	41357451	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	B4|SINE|B4	4988.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	24.03	36.4	20.35	12.82	20.53	15.27	12.67	12.38	7.49
Merged-chr7-43351361-2	chr7	43350860	43351860	+	683.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271019)	promoter-TSS (NM_001271019)	19.0	NM_145581	233186.0	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	17.16	15.67	24.05	16.87	20.53	24.11	21.12	17.24	17.49
Merged-chr7-122368089-1	chr7	122367589	122368589	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	MLT1O|LTR|ERVL-MaLR	78964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	5.15	5.07	12.95	6.07	2.8	4.02	6.34	2.65	1.25
Merged-chr2-58907339-2	chr2	58906868	58907868	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	152184.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	10.3	12.9	20.35	30.36	20.06	23.31	17.96	15.92	7.49
Merged-chr3-50444329-1	chr3	50443829	50444829	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011990)	promoter-TSS (NM_011990)	-716.0	NM_011990	26570.0	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	5.72	7.37	5.55	12.14	6.53	3.22	4.22	7.96	6.25
Merged-chr2-77287027-1	chr2	77286527	77287527	+	683.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6435.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	3.43	9.22	7.4	3.37	5.6	8.04	3.17	5.75	3.75
Merged-chr8-119836885-4	chr8	119836386	119837386	+	683.479187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	3693.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	22.88	7.83	8.32	18.22	11.2	15.27	15.84	11.94	9.37
Merged-chr10-80538330-1	chr10	80537830	80538830	+	683.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026094, intron 1 of 27)	intron (NM_026094, intron 1 of 27)	794.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	5.72	3.23	1.85	2.7	1.4	0.0	6.34	6.19	2.5
Merged-chr3-59225552-2	chr3	59225061	59226061	+	683.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14679.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	20.59	23.04	33.3	23.62	16.33	25.72	17.96	15.48	27.48
Merged-chr7-80084605-2	chr7	80084046	80085046	+	683.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 2 of 4)	intron (NM_175433, intron 2 of 4)	-9289.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	13.73	8.75	15.72	19.57	10.26	11.25	5.28	5.75	19.36
Merged-chr5-8164948-2	chr5	8164444	8165444	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001007220, intron 5 of 28)	intron (NM_001007220, intron 5 of 28)	108402.0	NM_001080974	109552.0	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.0	3.69	3.7	4.72	3.73	1.61	1.06	1.77	0.0
Merged-chr10-61536576-2	chr10	61536075	61537075	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153542, intron 3 of 4)	intron (NM_153542, intron 3 of 4)	-58909.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	2.29	1.84	6.47	5.4	2.33	3.22	5.28	3.1	2.5
Merged-chr7-114305629-2	chr7	114305126	114306126	+	683.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	4.58	6.45	14.8	8.1	5.6	10.45	1.06	6.63	6.87
Merged-chr14-47335037-1	chr14	47334537	47335537	+	683.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36763.0	NM_001360542	218975.0	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	12.01	5.07	1.85	2.7	5.13	2.41	6.34	5.31	1.87
Merged-chr12-102438700-3	chr12	102438210	102439210	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 1 of 13)	intron (NM_011175, intron 1 of 13)	1103.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	314.63	340.52	252.51	298.9	298.1	241.14	365.44	426.25	192.98
Merged-chr3-8987232-1	chr3	8986732	8987732	+	683.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	MER57-int|LTR|ERV1	16972.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	35.47	47.0	60.12	43.18	33.59	59.48	84.49	67.21	52.46
Merged-chr14-27497852-3	chr14	27497360	27498360	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177111, intron 6 of 17)	MIR|SINE|MIR	10600.0	NM_177111	320234.0	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	3.43	4.61	4.62	8.1	7.93	4.02	11.62	12.82	11.24
Merged-chr9-119067808-1	chr9	119067308	119068308	+	683.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011700, intron 15 of 18)	intron (NM_011700, intron 15 of 18)	15030.0	NM_001164567	22351.0	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	1.14	1.38	5.55	0.0	0.93	0.8	1.06	0.88	6.25
Merged-chr15-78246831-3	chr15	78246327	78247327	+	683.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	2016.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	66.36	82.94	98.05	74.22	64.84	98.06	73.93	53.06	54.96
Merged-chr8-46628872-3	chr8	46628378	46629378	+	683.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	11587.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	13.16	16.13	7.4	19.57	7.46	7.23	9.51	14.59	26.23
Merged-chr11-22930272-2	chr11	22929760	22930760	+	683.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361661, intron 2 of 2)	ORR1B1|LTR|ERVL-MaLR	-41745.0	NM_011663	22183.0	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	9.15	11.06	16.65	13.49	5.13	9.65	4.22	3.1	2.5
Merged-chrX-103634084-3	chrX	103633572	103634572	+	683.255554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	3486.0	NM_029158	75064.0	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	7.44	3.69	0.92	6.07	5.13	15.27	5.28	3.54	15.61
Merged-chr13-13517019-2	chr13	13516514	13517514	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73395.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	6.29	3.69	5.55	3.37	2.33	3.22	3.17	3.98	6.87
Merged-chr13-78201738-2	chr13	78201237	78202237	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-2864.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	2.29	0.92	1.85	2.02	3.73	0.0	2.11	0.44	2.5
Merged-chr18-12644344-2	chr18	12643838	12644838	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	CpG	805.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	21.74	9.68	8.32	13.49	7.0	4.82	28.52	19.9	6.25
Merged-chr15-78447829-2	chr15	78447317	78448317	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19253.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	32.61	62.67	38.85	36.43	42.92	46.62	34.85	41.56	32.48
Merged-chr2-153529356-5	chr2	153528851	153529851	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	620.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	10.87	5.07	13.87	14.84	6.06	4.02	32.74	7.52	9.99
Merged-chr15-86278701-2	chr15	86278193	86279193	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	1018.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	3.43	1.84	1.85	22.27	19.59	18.49	6.34	3.1	1.87
Merged-chr17-31018460-3	chr17	31017961	31018961	+	683.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39233.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	7.44	5.53	4.62	4.05	1.4	4.02	7.39	5.75	4.37
Merged-chr6-39778093-1	chr6	39777593	39778593	+	683.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32843.0	NM_010270	14548.0	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	37.18	40.55	49.95	35.76	33.59	65.11	29.57	26.53	34.35
Merged-chr10-127310089-3	chr10	127309580	127310580	+	683.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001171582, exon 4 of 22)	exon (NM_001171582, exon 4 of 22)	1706.0	NM_001003913	216443.0	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	18.31	14.75	5.55	12.82	11.66	9.65	11.62	7.96	6.25
Merged-chr6-134614918-3	chr6	134614414	134615414	+	683.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	17574.0	NM_026345	67729.0	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	37.18	25.34	13.87	27.66	35.45	22.51	35.91	22.99	8.12
Merged-chr1-155210634-3	chr1	155210147	155211147	+	683.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51944.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	5.72	2.3	1.85	3.37	2.33	3.22	2.11	2.21	7.49
Merged-chr19-7064765-3	chr19	7064249	7065249	+	683.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134147, intron 1 of 10)	intron (NM_134147, intron 1 of 10)	7981.0	NM_134147	107227.0	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	4.0	0.92	1.85	5.4	2.33	3.22	5.28	1.77	2.5
Merged-chr1-174434338-2	chr1	174433831	174434831	+	683.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR22_Mur|LTR|ERVK	3901.0	NM_146761	258756.0	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	8.01	3.69	9.25	3.37	5.6	4.82	2.11	3.1	8.12
Merged-chr8-56064320-2	chr8	56063808	56064808	+	683.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 5 of 9)	intron (NM_080438, intron 5 of 9)	123483.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	9.72	20.27	12.95	23.62	11.2	10.45	25.35	28.74	32.48
Merged-chr18-20651237-2	chr18	20650733	20651733	+	683.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-14017.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	8.58	15.67	24.05	12.82	13.53	25.72	21.12	17.69	14.36
Merged-chr18-53144960-2	chr18	53144444	53145444	+	683.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-31348.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	13.73	14.28	17.57	4.05	0.93	3.22	7.39	14.15	7.49
Merged-chr5-23493423-3	chr5	23492926	23493926	+	683.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026984, exon 16 of 26)	exon (NM_026984, exon 16 of 26)	58997.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	13.73	17.51	20.35	14.84	10.73	8.04	14.79	15.03	21.86
Merged-chr11-93987245-2	chr11	93986718	93987718	+	683.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8873.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	175.05	177.86	134.12	67.47	59.25	50.64	95.06	117.62	42.47
Merged-chr19-38799459-3	chr19	38798977	38799977	+	683.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021315, intron 11 of 20)	RLTR17B_Mm|LTR|ERVK	19760.0	NM_021315	57753.0	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	15.45	13.82	12.02	23.62	11.2	14.47	8.45	6.63	9.37
Merged-chr2-32428684-3	chr2	32428190	32429190	+	683.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	2461.0	NM_001164358	227731.0	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	7.44	8.75	12.95	7.42	7.93	11.25	8.45	3.1	6.25
Merged-chr5-150259384-2	chr5	150258893	150259893	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172887)	promoter-TSS (NM_172887)	-537.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	2.29	1.84	0.0	12.14	5.6	4.82	4.22	3.98	3.12
Merged-chr4-150901857-1	chr4	150901357	150902357	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020569, intron 5 of 6)	intron (NM_020569, intron 5 of 6)	8064.0	NM_020569	57320.0	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	5.72	5.99	1.85	4.72	1.4	4.82	5.28	1.77	5.0
Merged-chr13-62757117-2	chr13	62756578	62757578	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NR_030493	751548.0		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	22.31	9.68	9.25	4.72	5.13	5.63	13.73	8.84	18.74
Merged-chr18-25505261-1	chr18	25504761	25505761	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362304, intron 3 of 12)	intron (NM_001362304, intron 3 of 12)	174487.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.92	1.85	2.02	0.93	0.0	1.06	1.77	3.75
Merged-chr8-109853642-2	chr8	109853145	109854145	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009677, exon 18 of 24)	exon (NM_009677, exon 18 of 24)	14333.0	NR_028532	100217432.0		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	6.29	3.23	3.7	3.37	7.0	4.82	10.56	4.42	0.0
Merged-chr18-31802863-1	chr18	31802363	31803363	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1194.0	NM_028866	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	11.44	6.45	5.55	4.05	2.33	5.63	4.22	3.1	5.0
Merged-chr10-58341874-1	chr10	58341374	58342374	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026148, intron 1 of 9)	intron (NM_026148, intron 1 of 9)	-10089.0	NM_001359116	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	19.45	14.75	14.8	10.12	13.53	25.72	10.56	14.59	18.74
Merged-chr8-111157776-1	chr8	111157276	111158276	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009149, exon 26 of 26)	3' UTR (NM_009149, exon 26 of 26)	-12278.0	NR_040364	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	1.72	2.3	1.85	1.35	3.27	4.82	3.17	1.77	2.5
Merged-chr5-122343112-1	chr5	122342612	122343612	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144912, intron 5 of 10)	intron (NM_144912, intron 5 of 10)	11083.0	NM_144912	231724.0	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	9.15	20.27	18.5	20.92	14.93	4.82	12.67	14.59	6.25
Merged-chr2-169874124-1	chr2	169873624	169874624	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	89063.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	2.29	4.15	0.0	10.12	7.46	2.41	1.06	4.42	8.74
Merged-chr6-120472874-1	chr6	120472374	120473374	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008359, intron 2 of 12)	intron (NM_008359, intron 2 of 12)	9677.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	44.05	61.28	75.85	69.5	54.58	115.75	59.15	78.26	66.2
Merged-chr11-116623303-2	chr11	116622800	116623800	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	952.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	161.32	121.19	99.89	165.98	104.5	97.26	189.06	184.38	95.55
Merged-chr6-38434516-1	chr6	38434016	38435016	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177185, exon 1 of 17)	exon (NM_177185, exon 1 of 17)	591.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	239.12	200.9	199.79	190.95	185.2	151.11	196.45	172.0	128.65
Merged-chr1-191445630-1	chr1	191445130	191446130	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151615, intron 2 of 5)	ORR1D2|LTR|ERVL-MaLR	19418.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	14.3	6.45	5.55	8.1	2.33	1.61	3.17	1.77	0.62
Merged-chr13-47287883-1	chr13	47287383	47288383	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93880.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	1.14	4.61	6.47	4.72	6.06	8.04	1.06	0.88	1.25
Merged-chr16-58453935-1	chr16	58453435	58454435	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	ID_B1|SINE|B4	45400.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	15.45	11.06	12.02	24.29	18.66	19.29	5.28	3.98	4.37
Merged-chr14-13901853-3	chr14	13901360	13902360	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59453.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	2.86	2.76	1.85	6.75	3.27	3.22	6.34	3.54	2.5
Merged-chr17-86168805-1	chr17	86168305	86169305	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011104, exon 1 of 15)	exon (NM_011104, exon 1 of 15)	1020.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	13.73	8.29	5.55	6.75	7.46	2.41	2.11	6.63	1.25
Merged-chr13-77045505-1	chr13	77045005	77046005	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	89963.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	8.58	7.37	3.7	7.42	2.8	9.65	0.0	2.65	0.0
Merged-chr13-91543137-1	chr13	91542637	91543637	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 3 of 15)	intron (NM_001360776, intron 3 of 15)	82040.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	9.15	6.45	6.47	13.49	9.33	12.86	2.11	1.33	2.5
Merged-chr18-11695619-1	chr18	11695119	11696119	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081223, intron 5 of 18)	Lx7|LINE|L1	38270.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	21.17	33.64	22.2	15.52	13.53	11.25	23.24	23.43	37.47
Merged-chr3-101800478-1	chr3	101799978	101800978	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35745.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	38.9	23.5	6.47	35.09	33.59	31.35	7.39	12.82	6.87
Merged-chr11-97433313-1	chr11	97432813	97433813	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16847.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	19.45	17.97	24.05	38.46	13.06	20.9	10.56	10.61	14.99
Merged-chr7-87938526-1	chr7	87938026	87939026	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	-339559.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.29	4.15	0.0	4.72	4.67	4.82	2.11	3.54	5.0
Merged-chr6-66890903-1	chr6	66890403	66891403	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5494.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	4.0	2.76	2.77	6.75	2.33	3.22	5.28	5.75	0.0
Merged-chr16-62782399-2	chr16	62781884	62782884	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178925, intron 2 of 5)	intron (NM_178925, intron 2 of 5)	4332.0	NM_178925	106338.0	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	12.01	7.37	5.55	2.02	5.6	6.43	5.28	7.52	7.49
Merged-chr4-58466766-2	chr4	58466200	58467200	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-25602.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	21.17	18.89	24.97	8.1	9.8	8.04	45.42	38.47	19.36
Merged-chr2-164372840-1	chr2	164372340	164373340	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16333.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	2.29	0.92	6.47	4.72	6.06	5.63	2.11	5.31	2.5
Merged-chr7-88047535-1	chr7	88047035	88048035	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 8 of 9)	intron (NM_001081414, intron 8 of 9)	-230550.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.43	6.45	5.55	2.7	6.06	8.84	7.39	3.98	5.0
Merged-chr7-7280121-1	chr7	7279621	7280621	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1832.0	NR_003555	76229.0	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	2.86	6.91	1.85	5.4	4.2	7.23	10.56	8.84	9.99
Merged-chr11-22987436-1	chr11	22986936	22987936	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3157.0	NM_009837	12464.0	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	4.58	2.76	0.0	9.45	3.73	4.82	3.17	1.33	2.5
Merged-chr2-117303558-2	chr2	117303045	117304045	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011246, intron 3 of 16)	intron (NM_011246, intron 3 of 16)	39332.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	66.36	52.07	66.6	52.63	24.72	36.17	69.71	65.0	86.18
Merged-chr6-143073549-1	chr6	143073049	143074049	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362115, intron 7 of 26)	intron (NM_001362115, intron 7 of 26)	26603.0	NM_001362118	74741.0	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	32.61	41.93	24.05	43.86	32.66	13.66	47.53	45.54	19.98
Merged-chr2-124623036-1	chr2	124622536	124623536	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	12740.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	37.76	52.07	54.57	45.21	60.65	53.85	60.2	56.6	37.47
Merged-chr18-23898405-1	chr18	23897905	23898905	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56283.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	23.45	32.72	30.52	30.36	33.59	29.74	36.97	32.72	26.85
Merged-chr5-21130536-1	chr5	21130036	21131036	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	-45743.0	NR_153366	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	92.67	95.38	37.92	79.62	46.65	50.64	78.16	85.78	58.08
Merged-chr17-83764733-1	chr17	83764233	83765233	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054082, intron 7 of 16)	intron (NM_054082, intron 7 of 16)	58570.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	10.3	5.99	3.7	1.35	1.4	6.43	7.39	3.1	2.5
Merged-chr1-24688366-1	chr1	24687866	24688866	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026719, intron 2 of 15)	ORR1A2-int|LTR|ERVL-MaLR	9448.0	NM_001310483	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	20.59	21.2	19.42	29.69	25.19	16.08	19.01	26.97	32.48
Merged-chr6-97508735-1	chr6	97508235	97509235	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-20915.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	33.75	58.52	65.67	14.84	11.2	17.68	88.72	113.19	53.08
Merged-chr17-31344404-1	chr17	31343904	31344904	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242427, intron 17 of 19)	intron (NM_001242427, intron 17 of 19)	-41830.0	NM_008804	18585.0	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	2.86	3.23	1.85	2.7	0.0	1.61	6.34	0.44	5.0
Merged-chr6-37355590-1	chr6	37355090	37356090	+	683.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 6 of 11)	intron (NM_178661, intron 6 of 11)	-55614.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	5.15	4.15	0.0	4.72	2.8	6.43	2.11	3.1	1.25
Merged-chr11-82007908-3	chr11	82007372	82008372	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17D|LTR|ERVK	-27705.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	60.07	51.61	42.55	51.95	33.59	40.19	53.87	37.14	36.85
Merged-chr3-122312255-1	chr3	122311755	122312755	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18552.0	NR_030439	791077.0		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	3.43	3.23	2.77	3.37	4.67	0.0	3.17	4.42	0.0
Merged-chr18-5054304-1	chr18	5053804	5054804	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153153, intron 4 of 34)	intron (NM_153153, intron 4 of 34)	7715.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.86	2.3	5.55	4.72	3.73	3.22	2.11	2.65	0.0
Merged-chr3-89997866-1	chr3	89997366	89998366	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045749)	promoter-TSS (NR_045749)	237.0	NM_001310681	23897.0	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	60.64	45.62	17.57	70.17	47.12	24.92	64.43	55.71	14.99
Merged-chr5-143817202-2	chr5	143816696	143817696	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-54666.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	14.3	9.68	14.8	10.12	10.73	19.29	15.84	18.57	8.74
Merged-chr9-13622485-1	chr9	13621985	13622985	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	2496.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	8.01	5.99	5.55	7.42	8.86	7.23	8.45	0.88	7.49
Merged-chr3-59059338-1	chr3	59058838	59059838	+	683.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177855, intron 4 of 43)	intron (NM_177855, intron 4 of 43)	42483.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	6.29	1.38	0.0	1.35	1.87	1.61	2.11	1.77	1.25
Merged-chr4-54526291-1	chr4	54525791	54526791	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-421654.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.29	3.23	5.55	3.37	4.2	14.47	2.11	1.77	2.5
Merged-chr1-38989316-1	chr1	38988816	38989816	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026850, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1502.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	10.87	15.21	9.25	6.75	4.2	9.65	9.51	3.98	7.49
Merged-chr1-58696235-2	chr1	58695733	58696733	+	683.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175370)	promoter-TSS (NM_175370)	-244.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	8.58	5.07	9.25	2.02	6.06	1.61	3.17	5.75	1.25
Merged-chr11-8497283-3	chr11	8496794	8497794	+	682.955566	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 16 of 30)	intron (NM_001083587, intron 16 of 30)	167241.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	13.16	4.61	12.95	10.8	7.46	28.13	5.28	2.65	6.87
Merged-chr8-43416051-2	chr8	43415528	43416528	+	682.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-109019.0	NM_009556	22702.0	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	5.72	4.15	1.85	19.57	28.92	1.61	42.25	42.89	9.99
Merged-chr10-57721233-2	chr10	57720753	57721753	+	682.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	intron (NM_008863, intron 4 of 5)	-63670.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	38.9	39.17	24.97	47.9	46.65	45.82	43.3	47.75	41.84
Merged-chr12-33146094-2	chr12	33145597	33146597	+	682.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015602, intron 1 of 5)	intron (NR_015602, intron 1 of 5)	1489.0	NR_015602	320046.0	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	8.58	5.53	8.32	3.37	5.13	8.04	6.34	3.98	7.49
Merged-chr8-110231961-2	chr8	110231459	110232459	+	682.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13999.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	6.29	8.75	1.85	4.05	6.53	5.63	26.4	16.8	6.25
Merged-chr10-118737268-2	chr10	118736758	118737758	+	682.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131645.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	3.43	5.53	18.5	5.4	6.06	8.84	11.62	8.84	8.12
Merged-chr15-102100367-2	chr15	102099876	102100876	+	682.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2558.0	NM_001355636	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	6.29	2.76	1.85	8.1	1.87	1.61	6.34	1.77	1.25
Merged-chr14-51855474-2	chr14	51854976	51855976	+	682.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_053111)	TTS (NM_053111)	1478.0	NM_017385	53873.0	Mm.221324	NM_017385		Ear7	mR7	eosinophil-associated, ribonuclease A family, member 7	protein-coding	13.16	10.6	11.1	4.05	7.0	3.22	4.22	2.21	6.87
Merged-chr14-65336987-2	chr14	65336495	65337495	+	682.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21681.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	6.86	8.75	12.02	15.52	7.93	13.66	7.39	9.73	8.74
Merged-chr10-94569115-3	chr10	94568595	94569595	+	682.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	-6162.0	NM_001168684	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	9.15	7.83	9.25	15.52	9.8	11.25	4.22	4.86	8.12
Merged-chr3-157764010-3	chr3	157763514	157764514	+	682.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	161049.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	16.59	17.97	11.1	14.17	5.6	4.82	11.62	4.86	8.74
Merged-chr17-84837973-3	chr17	84837450	84838450	+	682.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47164.0	NM_028233	72416.0	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	3.43	3.69	0.0	2.7	2.8	1.61	3.17	2.65	3.12
Merged-chr17-70979797-2	chr17	70979263	70980263	+	682.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	B4A|SINE|B4	10753.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	13.73	6.45	13.87	16.87	10.26	19.29	19.01	10.61	8.12
Merged-chr8-125061127-1	chr8	125060627	125061627	+	682.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	RLTR40|LTR|ERVK	6932.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.57	1.38	3.7	2.7	1.4	4.02	17.96	9.29	11.24
Merged-chr10-10466697-1	chr10	10466197	10467197	+	682.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 1 of 36)	LTR101_Mam|LTR|ERVL	5617.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	11.44	17.05	9.25	4.05	7.93	12.06	77.1	76.94	65.58
Merged-chr7-4524433-3	chr7	4523933	4524933	+	682.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033548, intron 9 of 11)	B3A|SINE|B2	-1905.0	NM_009406	21954.0	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	1.72	4.15	3.7	1.35	1.87	4.82	4.22	3.1	2.5
Merged-chr4-58506152-3	chr4	58505644	58506644	+	682.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	PB1D11|SINE|Alu	-6741.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	29.75	28.57	51.8	24.29	20.99	30.54	45.42	48.2	16.24
Merged-chr7-102230202-2	chr7	102229719	102230719	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_111937, intron 2 of 5)	intron (NR_111937, intron 2 of 5)	7191.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	47.48	35.48	49.02	43.18	25.66	23.31	39.08	45.1	56.21
Merged-chr13-99175372-2	chr13	99174848	99175848	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9475.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	11.44	12.9	9.25	16.19	19.59	6.43	26.4	11.05	8.12
Merged-chr8-10831438-2	chr8	10830951	10831951	+	682.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	51003.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	66.36	50.69	34.22	51.28	42.45	18.49	48.58	31.39	15.61
Merged-chr19-11093528-2	chr19	11093010	11094010	+	682.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12407.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	19.45	31.79	9.25	22.27	20.99	24.92	13.73	12.82	8.12
Merged-chr16-3236076-2	chr16	3235566	3236566	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-356332.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.43	3.23	9.25	8.1	4.67	4.02	4.22	4.86	6.25
Merged-chr4-137609875-2	chr4	137609372	137610372	+	682.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355588, intron 6 of 26)	(TG)n|Simple_repeat|Simple_repeat	15700.0	NM_130879	170707.0	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	64.07	59.44	61.05	64.77	51.32	97.26	74.99	72.96	53.08
Merged-chr5-112993462-2	chr5	112992962	112993962	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	22076.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	14.87	19.81	29.6	11.47	16.33	14.47	16.9	5.75	5.0
Merged-chr13-73417945-2	chr13	73417441	73418441	+	682.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49442.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	5.15	8.29	5.55	5.4	1.87	3.22	4.22	0.44	3.75
Merged-chr11-82038956-6	chr11	82038350	82039350	+	682.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3273.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	31.46	23.96	13.87	11.47	11.2	11.25	31.69	18.57	30.6
Merged-chr2-52605558-1	chr2	52605058	52606058	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	-46947.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	8.01	4.61	5.55	10.12	3.27	1.61	2.11	4.86	3.12
Merged-chr17-18968549-2	chr17	18968062	18969062	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR3-int|LTR|ERVK	54240.0	NM_001104549	627367.0	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	1.72	0.92	5.55	2.7	2.33	3.22	3.17	1.77	2.5
Merged-chr9-113782375-2	chr9	113781882	113782882	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 6 of 39)	Lx9|LINE|L1	-10948.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	76.08	87.55	66.6	66.12	52.25	28.94	36.97	44.66	29.98
Merged-chr6-119483112-2	chr6	119482611	119483611	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	3443.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	22.88	18.43	24.05	12.14	15.39	20.09	22.18	16.8	9.99
Merged-chr5-34533200-3	chr5	34532710	34533710	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	7426.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	29.75	48.38	66.6	39.81	34.99	98.87	50.7	59.69	37.47
Merged-chr11-103172299-2	chr11	103171806	103172806	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	1168.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	18.88	11.52	10.17	19.57	9.33	18.49	5.28	3.98	6.25
Merged-chr1-170844662-1	chr1	170844162	170845162	+	682.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 4 of 15)	L1MC4|LINE|L1	23109.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	25.17	35.48	40.7	14.17	13.53	16.88	17.96	20.78	10.62
Merged-chr10-80587626-2	chr10	80587138	80588138	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145421, intron 1 of 4)	intron (NM_145421, intron 1 of 4)	2703.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	10.3	11.52	14.8	6.75	5.13	13.66	16.9	7.07	16.24
Merged-chr6-129499984-2	chr6	129499480	129500480	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138648, exon 3 of 8)	exon (NM_138648, exon 3 of 8)	7185.0	NM_138648	108078.0	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	12.01	11.52	7.4	12.14	9.8	21.7	6.34	3.54	5.0
Merged-chr8-91019980-2	chr8	91019477	91020477	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 25 of 39)	intron (NM_177224, intron 25 of 39)	-50080.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.15	4.61	2.77	4.05	3.73	4.82	5.28	3.98	1.87
Merged-chr13-107788773-1	chr13	107788273	107789273	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	101291.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	12.59	11.06	12.95	20.24	19.13	3.22	10.56	13.71	12.49
Merged-chr10-20882819-2	chr10	20882319	20883319	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69728.0	NM_026203	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.58	8.29	5.55	11.47	12.13	4.82	15.84	4.86	7.49
Merged-chr1-182376362-1	chr1	182375862	182376862	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32805.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	4.58	2.3	3.7	0.67	3.73	3.22	2.11	3.98	3.12
Merged-chr11-54733675-1	chr11	54733175	54734175	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ORR1F|LTR|ERVL-MaLR	54028.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	13.16	8.75	11.1	9.45	6.53	9.65	8.45	7.07	7.49
Merged-chr6-98499927-3	chr6	98499424	98500424	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157170.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	12.01	10.6	7.4	6.75	10.73	17.68	24.29	19.01	11.24
Merged-chr5-43849458-1	chr5	43848958	43849958	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-19351.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	11.44	18.43	16.65	26.99	15.39	31.35	15.84	7.07	13.12
Merged-chr5-73133968-2	chr5	73133451	73134451	+	682.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028194, intron 5 of 62)	intron (NM_028194, intron 5 of 62)	122667.0	NM_028194	72313.0	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	3.43	1.84	1.85	2.7	0.0	4.82	2.11	3.98	5.0
Merged-chr13-91132971-1	chr13	91132471	91133471	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	91016.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	6.29	8.29	5.55	12.82	12.6	10.45	12.67	10.17	3.75
Merged-chr8-126643753-1	chr8	126643253	126644253	+	682.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-50317.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.29	2.76	10.17	4.72	10.26	6.43	15.84	8.4	11.24
Merged-chr17-64771547-1	chr17	64771047	64772047	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4436.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	3.43	4.15	12.95	6.07	1.4	6.43	0.0	0.88	2.5
Merged-chr17-21272314-1	chr17	21271814	21272814	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11887.0	NM_134199	171233.0	Mm.222636	NM_134199	ENSMUSG00000050102	Vmn1r235	V1rf2	vomeronasal 1 receptor 235	protein-coding	4.58	4.61	0.0	8.1	2.8	3.22	0.0	7.52	1.25
Merged-chr3-89322979-2	chr3	89322480	89323480	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010108)	promoter-TSS (NM_010108)	-101.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	3.43	1.38	1.85	5.4	0.0	0.8	3.17	0.88	0.0
Merged-chr1-92775545-1	chr1	92775045	92776045	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56100.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	8.01	12.44	2.77	10.12	13.06	9.65	7.39	2.65	2.5
Merged-chr11-26127660-1	chr11	26127160	26128160	+	682.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	L2a|LINE|L2	-74580.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	3.43	4.15	4.62	8.1	7.0	12.86	2.11	3.1	8.12
Merged-chr8-111626077-3	chr8	111625575	111626575	+	682.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001168623)	TTS (NM_001168623)	4247.0	NM_027570	52815.0	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	4.0	3.69	0.0	3.37	4.67	1.61	2.11	0.88	2.5
Merged-chr10-39436290-3	chr10	39435796	39436796	+	682.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	66497.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	21.74	32.72	23.12	22.94	11.2	16.88	46.47	19.01	18.11
Merged-chr12-102398693-2	chr12	102398188	102399188	+	682.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011175, intron 10 of 13)	intron (NM_011175, intron 10 of 13)	41125.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	11.44	14.28	35.15	10.12	13.06	27.33	9.51	14.59	20.61
Merged-chr3-105798938-2	chr3	105798522	105799522	+	682.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	2359.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	65.21	63.59	78.62	38.46	34.52	56.27	100.34	65.88	58.71
Merged-chr9-22117662-2	chr9	22117175	22118175	+	682.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357309)	promoter-TSS (NM_001357309)	-480.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	92.67	99.07	60.12	85.01	86.3	73.14	104.56	122.92	64.33
Merged-chr18-80853519-3	chr18	80853021	80854021	+	682.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015805, intron 8 of 28)	RMER6A|LTR|ERVK	80537.0	NM_001201569	50771.0	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	13.73	7.83	13.87	12.82	11.66	8.04	31.69	17.24	6.87
Merged-chr3-84429514-1	chr3	84429014	84430014	+	682.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49593.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	4.0	2.3	1.85	4.05	1.4	9.65	2.11	0.44	0.0
Merged-chr3-94483503-1	chr3	94483003	94484003	+	682.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357787)	promoter-TSS (NM_001357787)	781.0	NR_110353	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	7.44	1.84	1.85	8.1	4.2	22.51	3.17	6.19	1.25
Merged-chr2-44504456-3	chr2	44503962	44504962	+	682.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	357160.0	NM_172662	227835.0	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	1.72	4.15	12.95	9.45	4.2	3.22	7.39	9.73	9.37
Merged-chr5-117495079-3	chr5	117494590	117495590	+	682.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	81088.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	47.48	52.99	33.3	63.42	54.58	85.2	65.48	77.82	42.47
Merged-chr7-6241068-1	chr7	6240568	6241568	+	682.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11642.0	NM_001177416	627821.0	Mm.99441	NM_001177416	ENSMUSG00000053367	Epp13	EG627821|Eddm13|Gm6792	epididymal protein 13	protein-coding	2.29	2.3	1.85	0.0	1.4	3.22	4.22	2.65	0.0
Merged-chr12-4476487-3	chr12	4475959	4476959	+	682.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	723.0	NM_010881	17977.0	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	39.47	15.21	34.22	31.04	25.19	32.15	34.85	15.92	21.86
Merged-chr19-15923671-3	chr19	15923159	15924159	+	682.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177420, intron 1 of 8)	MTC|LTR|ERVL-MaLR	963.0	NM_001205339	107272.0	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	6.86	3.23	3.7	13.49	2.33	8.84	6.34	2.21	0.0
Merged-chr2-127338408-4	chr2	127337954	127338954	+	682.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172539)	promoter-TSS (NM_172539)	-185.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	12.59	5.07	4.62	7.42	3.27	3.22	4.22	5.31	5.62
Merged-chr6-129476928-3	chr6	129476411	129477411	+	682.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4132.0	NR_132130	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	8.01	5.99	5.55	8.77	5.13	9.65	9.51	9.29	2.5
Merged-chr18-60745573-3	chr18	60745086	60746086	+	682.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	1160.0	NM_001348101	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	89.24	99.53	75.85	118.08	76.04	111.73	115.12	103.47	40.59
Merged-chr3-68952241-2	chr3	68951755	68952755	+	682.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026641, intron 8 of 19)	RLTR45|LTR|ERVK	52315.0	NM_026641	68259.0	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	7.44	7.83	3.7	10.12	6.06	17.68	12.67	13.71	21.23
Merged-chr1-24468595-2	chr1	24468090	24469090	+	682.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007733, intron 11 of 50)	intron (NM_007733, intron 11 of 50)	118847.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	21.74	22.12	1.85	15.52	14.0	20.9	30.63	19.01	24.36
Merged-chr15-37100407-2	chr15	37099892	37100892	+	682.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-92990.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	6.29	0.92	0.92	2.7	1.87	3.22	3.17	2.21	0.62
Merged-chr2-118726972-3	chr2	118726476	118727476	+	682.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177568, intron 1 of 31)	intron (NM_177568, intron 1 of 31)	1462.0	NM_177568	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	10.87	13.36	6.47	12.82	15.39	13.66	24.29	16.36	3.12
Merged-chr11-106734014-3	chr11	106733493	106734493	+	682.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger12|DNA|TcMar-Tigger	-17233.0	NM_001271375	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	57.21	86.17	20.35	72.87	46.65	71.54	83.44	68.54	33.1
Merged-chr11-33115049-2	chr11	33114573	33115573	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	32327.0	NM_008005	14172.0	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	5.15	3.23	3.7	3.37	2.8	1.61	4.22	3.98	4.37
Merged-chr5-3279237-1	chr5	3278737	3279737	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-64656.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	6.29	4.15	1.85	8.77	8.86	18.49	3.17	2.65	8.74
Merged-chr15-58660719-1	chr15	58660219	58661219	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	162708.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.72	4.61	0.0	8.77	9.8	4.82	4.22	3.54	3.75
Merged-chr1-172346441-1	chr1	172345941	172346941	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	5231.0	NM_001039484	16513.0	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	73.22	67.74	49.02	61.4	59.25	67.52	76.05	87.11	41.84
Merged-chr7-43678698-1	chr7	43678198	43679198	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_145582)	TTS (NM_145582)	6667.0	NM_145582	233189.0	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	4.58	5.53	11.1	5.4	4.2	13.66	10.56	1.77	9.37
Merged-chr11-69558863-3	chr11	69558357	69559357	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007911, intron 1 of 4)	intron (NM_007911, intron 1 of 4)	1380.0	NM_007911	13643.0	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	12.59	11.98	14.8	19.57	11.66	21.7	13.73	10.61	14.99
Merged-chr14-9828835-1	chr14	9828335	9829335	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 7 of 9)	intron (NM_001360141, intron 7 of 9)	-55260.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.0	4.61	3.7	3.37	3.73	4.82	1.06	2.65	1.25
Merged-chr11-11564456-1	chr11	11563956	11564956	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63382.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	5.72	5.99	3.7	5.4	6.06	4.82	9.51	4.42	4.37
Merged-chr8-109039984-1	chr8	109039484	109040484	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35238.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	3.43	2.76	7.4	9.45	7.93	4.82	7.39	2.21	8.74
Merged-chr3-36318469-1	chr3	36317969	36318969	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-96194.0	NM_198192	229214.0	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	12.01	9.22	3.7	4.05	4.67	3.22	8.45	6.19	2.5
Merged-chr13-101812135-1	chr13	101811635	101812635	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43918.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	10.3	10.6	11.1	17.54	7.46	14.47	8.45	9.29	9.99
Merged-chr7-30608108-1	chr7	30607608	30608608	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026815, intron 3 of 7)	intron (NM_026815, intron 3 of 7)	4626.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	3.43	3.69	1.85	5.4	4.2	4.82	1.06	1.77	3.75
Merged-chr4-53352893-1	chr4	53352393	53353393	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-82661.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	50.91	67.27	25.9	62.75	63.45	43.4	36.97	44.66	19.36
Merged-chr10-120812206-1	chr10	120811706	120812706	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	-45423.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	2.29	5.53	1.85	5.4	2.33	0.0	4.22	1.33	2.5
Merged-chr1-88228207-1	chr1	88227707	88228707	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 2 of 41)	intron (NM_001281466, intron 2 of 41)	1187.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	17.73	21.66	29.6	26.31	16.33	28.94	32.74	18.57	24.98
Merged-chr7-16491930-1	chr7	16491430	16492430	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15150.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	4.58	2.3	9.25	2.02	1.87	3.22	2.11	3.98	3.75
Merged-chr3-103421213-1	chr3	103420713	103421713	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	141920.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	5.72	8.29	5.55	6.75	3.73	1.61	4.22	7.96	6.25
Merged-chr10-62426725-1	chr10	62426225	62427225	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4268.0	NM_145419	216019.0	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	5.72	5.53	8.32	7.42	4.2	1.61	8.45	7.07	2.5
Merged-chr11-20216580-1	chr11	20216080	20217080	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008996, intron 2 of 5)	B2_Mm2|SINE|B2	15168.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	9.15	7.83	12.02	8.77	7.46	18.49	10.56	16.8	16.86
Merged-chr10-75943337-1	chr10	75942837	75943837	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	-2665.0	NM_001277132	333670.0	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	1.72	2.3	1.85	2.7	0.93	3.22	2.11	6.19	1.25
Merged-chr2-103721934-1	chr2	103721434	103722434	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153126, intron 28 of 28)	intron (NM_153126, intron 28 of 28)	39336.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	14.3	4.15	16.65	2.7	1.87	8.04	11.62	4.86	3.75
Merged-chr1-191609758-1	chr1	191609258	191610258	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178632, intron 11 of 19)	MTC|LTR|ERVL-MaLR	34122.0	NM_001306204	77065.0	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	19.45	18.43	32.37	12.14	5.13	15.27	10.56	13.27	6.25
Merged-chr4-8709736-3	chr4	8709248	8710248	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	19342.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	9.72	13.82	7.4	8.77	7.0	8.04	15.84	10.17	9.99
Merged-chr14-55105709-3	chr14	55105169	55106169	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007455, intron 2 of 21)	intron (NM_007455, intron 2 of 21)	924.0	NM_001303502	11766.0	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	17.16	22.12	31.45	41.16	22.86	34.56	41.19	38.91	29.35
Merged-chr5-137785776-1	chr5	137785276	137786276	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_144913, exon 1 of 4)	exon (NM_144913, exon 1 of 4)	925.0	NM_144913	231803.0	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	180.77	117.96	133.19	191.62	148.35	141.47	155.26	167.58	84.94
Merged-chr4-58585545-2	chr4	58585047	58586047	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32056.0	NM_010336	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	43.48	28.57	21.27	27.66	25.19	10.45	20.07	17.69	14.36
Merged-chr10-26564643-1	chr10	26564143	26565143	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110008.0	NR_033633	667572.0	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.72	3.23	5.55	4.72	2.33	3.22	3.17	4.42	5.62
Merged-chrX-36761083-2	chrX	36760568	36761568	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 2 of 3)	intron (NR_075097, intron 2 of 3)	17436.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	4.0	7.83	7.4	2.02	1.87	1.61	3.17	3.98	1.25
Merged-chr2-170173981-1	chr2	170173481	170174481	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31306.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	34.32	33.18	23.12	43.18	21.93	30.54	34.85	35.37	32.48
Merged-chr13-99028731-1	chr13	99028231	99029231	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-44166.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	10.3	8.75	3.7	16.19	10.73	22.51	12.67	15.48	8.74
Merged-chr1-153526833-1	chr1	153526333	153527333	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028749, intron 5 of 11)	intron (NM_028749, intron 5 of 11)	22881.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	10.3	6.45	19.42	12.82	1.87	9.65	5.28	7.07	2.5
Merged-chr18-61133923-1	chr18	61133423	61134423	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178277, exon 19 of 20)	exon (NM_178277, exon 19 of 20)	16455.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	11.44	9.68	14.8	2.7	13.53	15.27	12.67	8.84	13.74
Merged-chr3-9793852-1	chr3	9793352	9794352	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195031, intron 1 of 8)	ORR1E|LTR|ERVL-MaLR	39827.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.43	1.38	3.7	4.72	4.2	3.22	5.28	0.44	8.74
Merged-chrX-151017810-1	chrX	151017310	151018310	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168600)	promoter-TSS (NM_001168600)	-488.0	NM_198110	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	25.74	12.9	9.25	24.96	14.46	16.88	26.4	14.59	8.12
Merged-chr4-89270709-1	chr4	89270209	89271209	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	11483.0	NM_001040654	12578.0	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin dependent kinase inhibitor 2A	protein-coding	6.29	4.61	5.55	4.05	4.2	3.22	2.11	7.07	3.75
Merged-chr10-71306372-1	chr10	71305872	71306872	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-4373.0	NR_152791	102637684.0	Mm.338906	NR_152791	ENSMUSG00000093732	Gm20609	-	predicted gene 20609	ncRNA	4.0	4.15	12.95	4.05	2.8	5.63	4.22	0.88	3.12
Merged-chr6-15790260-1	chr6	15789760	15790760	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 4 of 4)	intron (NM_175088, intron 4 of 4)	69599.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.0	4.15	3.7	2.02	1.4	1.61	4.22	2.21	2.5
Merged-chr4-149838971-1	chr4	149838471	149839471	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64704.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.58	2.3	5.55	2.7	2.33	8.04	1.06	0.0	0.0
Merged-chr13-97534069-1	chr13	97533569	97534569	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25931.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	6.86	2.76	12.02	4.05	7.46	0.0	4.22	2.65	0.0
Merged-chr16-24312881-1	chr16	24312381	24313381	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80469.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.29	4.15	2.77	2.02	4.67	0.8	5.28	2.65	0.0
Merged-chr5-109563038-1	chr5	109562538	109563538	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	-4045.0	NM_001310694	57914.0	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	5.15	1.84	3.7	4.72	2.8	8.04	5.28	3.54	4.37
Merged-chr8-13758101-1	chr8	13757601	13758601	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357247, intron 1 of 16)	intron (NM_001357247, intron 1 of 16)	445.0	NM_001357247	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	95.53	78.33	64.75	108.63	117.56	118.16	106.67	81.8	62.45
Merged-chr8-35588395-2	chr8	35587883	35588883	+	682.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081279, exon 1 of 3)	exon (NM_001081279, exon 1 of 3)	585.0	NM_001081279	52065.0	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	20.59	15.67	23.12	26.99	24.26	35.37	50.7	21.22	24.36
Merged-chr4-47294042-1	chr4	47293542	47294542	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009928, intron 28 of 39)	intron (NM_009928, intron 28 of 39)	-59180.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.15	4.61	1.85	6.75	13.53	8.04	5.28	5.31	10.62
Merged-chr15-79756533-1	chr15	79756033	79757033	+	682.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045069, exon 4 of 4)	non-coding (NR_045069, exon 4 of 4)	13835.0	NR_045069	100504191.0	Mm.421420	NR_045069	ENSMUSG00000087543	Gm16576	-	predicted gene 16576	ncRNA	13.16	10.6	17.57	14.84	10.73	33.76	17.96	17.69	19.98
Merged-chr7-31007934-1	chr7	31007434	31008434	+	682.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26013.0	NM_001242647	76415.0	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	16.02	7.83	8.32	16.19	9.33	26.53	12.67	8.4	11.24
Merged-chr12-35576318-3	chr12	35575839	35576839	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41350.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	2.29	6.91	5.55	4.05	5.13	4.82	4.22	3.54	1.25
Merged-chr7-110287035-3	chr7	110286510	110287510	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	65307.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	10.3	6.45	0.0	7.42	5.13	3.22	4.22	0.44	1.25
Merged-chr16-24643184-3	chr16	24642680	24643680	+	681.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-78675.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	10.3	8.75	9.25	18.22	13.06	3.22	16.9	10.17	3.75
Merged-chr6-84031459-3	chr6	84030946	84031946	+	681.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	MTD|LTR|ERVL-MaLR	12060.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	16.59	22.12	40.7	15.52	24.26	12.06	14.79	13.71	27.48
Merged-chr3-99253949-2	chr3	99253416	99254416	+	681.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009323, exon 1 of 8)	exon (NM_009323, exon 1 of 8)	156.0	NM_009323	21384.0	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	2.86	2.3	0.0	1.35	0.93	0.8	5.28	1.77	7.49
Merged-chr10-117216990-3	chr10	117216487	117217487	+	681.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026570, intron 6 of 6)	intron (NM_026570, intron 6 of 6)	7520.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	114.98	134.09	75.85	95.81	123.62	102.88	92.94	164.93	68.7
Merged-chr5-36698292-2	chr5	36697788	36698788	+	681.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2267.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	16.02	19.81	13.87	14.84	10.73	11.25	20.07	7.07	9.99
Merged-chr7-58731008-2	chr7	58730504	58731504	+	681.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	72802.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.43	4.15	6.47	2.7	3.27	0.0	1.06	5.31	5.0
Merged-chr1-87656292-3	chr1	87655786	87656786	+	681.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	L1MC4|LINE|L1	35974.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	25.17	24.88	30.52	28.34	13.53	24.92	33.8	25.65	27.48
Merged-chr9-100455255-1	chr9	100454755	100455755	+	681.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31218.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	42.33	37.78	44.4	41.16	23.33	61.89	24.29	13.71	17.49
Merged-chr14-55644459-3	chr14	55643872	55644872	+	681.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028780)	promoter-TSS (NM_028780)	-566.0	NM_028780	74140.0	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	93.24	157.13	114.69	106.61	122.23	127.8	88.72	95.07	86.18
Merged-chr16-92693371-3	chr16	92692886	92693886	+	681.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111022, intron 3 of 6)	intron (NM_001111022, intron 3 of 6)	3943.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	33.18	40.55	34.22	36.43	29.39	29.74	22.18	26.97	12.49
Merged-chr1-74712208-3	chr1	74711717	74712717	+	681.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1318.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	40.04	61.75	39.77	45.88	37.79	59.48	45.42	49.08	49.96
Merged-chr9-83447988-2	chr9	83447495	83448495	+	681.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_102437, intron 2 of 2)	intron (NR_102437, intron 2 of 2)	-6868.0	NM_029434	75782.0	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	2.86	3.69	0.0	1.35	8.4	4.02	1.06	3.54	1.87
Merged-chr19-32758989-2	chr19	32758499	32759499	+	681.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	1422.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	89.24	162.2	70.3	100.53	97.97	60.28	157.37	176.87	69.32
Merged-chr12-76372104-3	chr12	76371565	76372565	+	681.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178744, intron 1 of 1)	intron (NM_178744, intron 1 of 1)	1799.0	NM_178744	268564.0	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	45.76	35.94	45.32	39.81	29.86	49.83	49.64	45.1	37.47
Merged-chr4-133879438-1	chr4	133878938	133879938	+	681.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	intron (NM_009097, intron 2 of 21)	-4707.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	13.16	12.9	16.65	15.52	7.46	16.88	21.12	13.27	17.49
Merged-chr13-54758548-3	chr13	54758055	54759055	+	681.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033610)	TTS (NM_033610)	8040.0	NM_001362407	104069.0	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	3.43	2.76	1.85	2.02	3.27	3.22	5.28	3.54	5.0
Merged-chr13-39011939-2	chr13	39011443	39012443	+	681.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-51068.0	NM_001170431	108652.0	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	4.58	3.69	1.85	3.37	2.8	0.0	3.17	2.21	3.75
Merged-chr5-24602171-1	chr5	24601671	24602671	+	681.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025891)	promoter-TSS (NM_025891)	-169.0	NM_025891	66993.0	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	6.29	5.53	0.0	6.07	5.13	9.65	5.28	0.88	4.37
Merged-chr6-47562640-2	chr6	47562143	47563143	+	681.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	32387.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	18.88	24.88	14.8	10.8	12.13	12.06	16.9	11.5	14.99
Merged-chr8-72646560-2	chr8	72646049	72647049	+	681.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176940)	promoter-TSS (NM_176940)	-162.0	NM_176940	319555.0	Mm.390076	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	6.29	5.99	7.4	8.77	1.87	1.61	1.06	2.65	7.49
Merged-chr11-98740689-2	chr11	98740187	98741187	+	681.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1098.0	NM_178060	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	13.16	4.61	5.55	16.19	7.0	4.82	8.45	8.4	1.87
Merged-chr13-37671306-2	chr13	37670809	37671809	+	681.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-154729.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.43	4.15	5.55	2.7	0.93	1.61	5.28	3.1	3.75
Merged-chr6-38432727-3	chr6	38432281	38433281	+	681.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1144.0	NM_177185	320538.0	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	25.74	31.79	19.42	26.99	28.46	40.99	29.57	29.63	30.6
Merged-chr11-103269606-3	chr11	103269125	103270125	+	681.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2224.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	15.45	6.45	5.55	15.52	5.6	5.63	17.96	3.54	7.49
Merged-chr15-24621638-2	chr15	24621153	24622153	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	792111.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.43	5.99	3.7	3.37	4.2	0.0	2.11	5.75	5.62
Merged-chr17-55702543-1	chr17	55702043	55703043	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151542, intron 3 of 16)	intron (NR_151542, intron 3 of 16)	10093.0	NM_028370	72836.0	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	13.16	8.75	0.0	8.77	7.0	7.23	6.34	1.77	1.25
Merged-chr4-45612337-2	chr4	45611834	45612834	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27602.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	4.58	1.38	5.55	1.35	4.2	0.0	1.06	1.77	5.62
Merged-chr7-65373498-1	chr7	65372998	65373998	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2254.0	NM_009386	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	4.0	2.3	1.85	1.35	1.4	1.61	0.0	4.42	0.62
Merged-chr14-103547876-2	chr14	103547427	103548427	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022886, intron 8 of 30)	B1_Mm|SINE|Alu	34586.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	6.29	17.05	24.05	12.14	15.39	13.66	38.02	51.73	14.99
Merged-chr18-67250023-2	chr18	67249521	67250521	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-4191.0	NM_001357518	225651.0	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	Pgap5	metallophosphoesterase 1	protein-coding	57.21	47.92	27.75	38.46	27.06	28.94	55.98	99.49	42.47
Merged-chr6-108688519-3	chr6	108688004	108689004	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27570.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	6.29	5.99	1.85	6.07	0.47	1.61	8.45	2.21	1.87
Merged-chr19-45018441-2	chr19	45017957	45018957	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130526, intron 1 of 4)	intron (NM_001130526, intron 1 of 4)	322.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	79.52	39.63	26.82	68.15	33.12	24.11	58.09	19.9	18.74
Merged-chr11-99194780-2	chr11	99194285	99195285	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	36232.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	5.15	10.14	3.7	5.4	6.53	10.45	13.73	7.07	5.0
Merged-chr17-35002022-1	chr17	35001522	35002522	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011690, intron 2 of 29)	intron (NM_011690, intron 2 of 29)	1115.0	NM_011690	22321.0	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	46.91	49.3	38.85	43.86	38.72	47.42	53.87	56.16	45.59
Merged-chr11-97151563-2	chr11	97151041	97152041	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1829.0	NM_198100	73174.0	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	29.17	9.22	37.0	39.81	19.59	30.54	32.74	13.71	15.61
Merged-chr19-46521507-3	chr19	46521002	46522002	+	681.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19854.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	86.95	61.28	48.1	99.86	48.05	77.16	91.89	102.58	28.73
Merged-chr4-106970941-2	chr4	106970448	106971448	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	47763.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	1.14	0.92	5.55	4.05	2.33	7.23	2.11	1.33	0.0
Merged-chr16-88478232-2	chr16	88477719	88478719	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28759.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	2.86	7.83	3.7	7.42	4.67	3.22	7.39	6.19	6.87
Merged-chr3-98128991-1	chr3	98128491	98129491	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010928, intron 22 of 33)	intron (NM_010928, intron 22 of 33)	-31643.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	13.16	14.28	27.75	29.01	21.46	16.08	20.07	12.82	13.12
Merged-chr16-95732437-2	chr16	95731909	95732909	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30002.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.72	7.37	3.7	5.4	0.93	5.63	3.17	0.44	1.25
Merged-chr11-82010797-1	chr11	82010297	82011297	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24780.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	9.15	4.61	7.4	7.42	2.8	1.61	8.45	2.65	3.75
Merged-chr3-142474619-2	chr3	142474120	142475120	+	681.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22314.0	NM_153564	229898.0	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	3.43	3.69	1.85	3.37	2.33	4.82	5.28	4.42	2.5
Merged-chr18-35745437-3	chr18	35744952	35745952	+	681.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-4898.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	41.19	37.32	35.15	40.48	32.66	45.82	55.98	53.94	27.48
Merged-chr3-93556164-3	chr3	93555660	93556660	+	681.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009112, intron 1 of 2)	intron (NM_009112, intron 1 of 2)	1043.0	NM_009112	20194.0	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	5.15	3.69	7.4	4.72	6.53	4.82	1.06	0.88	1.25
Merged-chr5-129020974-2	chr5	129020470	129021470	+	681.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009391, exon 4 of 7)	exon (NM_009391, exon 4 of 7)	814.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	52.63	53.91	68.45	70.85	79.77	83.59	77.1	55.71	46.84
Merged-chr15-31602627-2	chr15	31602151	31603151	+	681.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007637)	promoter-TSS (NM_007637)	535.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	64.64	81.1	46.25	78.27	76.51	96.45	96.11	69.86	51.21
Merged-chr7-4528157-3	chr7	4527665	4528665	+	681.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033548, intron 4 of 11)	intron (NM_001033548, intron 4 of 11)	4277.0	NM_001033548	436022.0	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	30.32	16.13	27.75	39.13	10.26	24.11	39.08	23.43	23.11
Merged-chr9-96035553-2	chr9	96035058	96036058	+	681.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311130, intron 33 of 41)	intron (NM_001311130, intron 33 of 41)	80798.0	NM_011916	24127.0	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	2.29	8.75	5.55	11.47	6.53	12.86	9.51	10.61	6.25
Merged-chr2-148375800-2	chr2	148375347	148376347	+	681.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19530.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	1.72	1.84	1.85	4.72	5.6	1.61	3.17	4.86	5.0
Merged-chr13-93094295-2	chr13	93093793	93094793	+	681.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046182)	promoter-TSS (NR_046182)	-540.0	NR_046182	408254.0	Mm.474857	NR_046182	ENSMUSG00000114968	A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	5.15	3.69	5.55	2.02	5.6	4.82	11.62	4.86	5.0
Merged-chr8-125574400-3	chr8	125573866	125574866	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4503.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	3.43	4.61	1.85	6.75	2.8	0.8	6.34	3.1	6.25
Merged-chr12-55820395-1	chr12	55819895	55820895	+	681.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003719, intron 1 of 39)	intron (NM_001003719, intron 1 of 39)	1121.0	NM_019994	56784.0	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	26.31	27.19	35.15	30.36	30.79	41.8	28.52	15.03	19.36
Merged-chr17-56337422-3	chr17	56336920	56337920	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	11370.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	6.86	4.61	10.17	5.4	4.67	4.82	6.34	9.73	3.12
Merged-chr6-149120089-1	chr6	149119589	149120589	+	681.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-18409.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	1.14	3.69	2.77	2.7	2.33	0.0	1.06	3.1	1.25
Merged-chr11-21048174-3	chr11	21047667	21048667	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43157.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	85.81	82.94	69.37	74.89	76.04	81.99	68.65	68.98	58.71
Merged-chrX-134539962-3	chrX	134539463	134540463	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013898, intron 1 of 1)	B2_Mm1a|SINE|B2	1707.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	5.15	4.61	3.7	2.02	3.27	2.41	5.28	1.33	1.25
Merged-chr7-110260117-3	chr7	110259610	110260610	+	681.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 3 of 11)	intron (NM_009302, intron 3 of 11)	38407.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	56.06	69.12	45.32	69.5	46.65	41.8	57.03	41.56	56.21
Merged-chr1-176819470-1	chr1	176818970	176819970	+	681.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 1 of 18)	intron (NM_001357390, intron 1 of 18)	4810.0	NM_029756	76816.0	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	131.0	112.89	48.1	112.0	101.7	59.48	110.9	119.39	72.45
Merged-chrX-159911790-3	chrX	159911268	159912268	+	681.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-30925.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	28.6	29.49	28.67	49.25	41.52	40.19	35.91	39.8	17.49
Merged-chr14-31272414-2	chr14	31271918	31272918	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033668, exon 54 of 78)	exon (NM_001033668, exon 54 of 78)	20929.0	NM_027088	104416.0	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	2.86	2.76	0.0	3.37	1.87	0.0	2.11	3.54	0.0
Merged-chr17-15652798-2	chr17	15652303	15653303	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12H|LTR|ERVK	21015.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	8.58	5.99	1.85	10.8	2.33	4.82	10.56	0.44	0.0
Merged-chr15-79693909-2	chr15	79693423	79694423	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013818, intron 1 of 11)	intron (NM_013818, intron 1 of 11)	3027.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	31.46	47.92	57.35	21.59	25.19	36.97	52.81	51.73	59.95
Merged-chr4-132806382-2	chr4	132805885	132806885	+	681.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-10021.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	239.69	212.42	110.07	188.25	124.09	81.18	257.71	359.04	108.67
Merged-chr13-6836938-2	chr13	6836461	6837461	+	681.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-188190.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	1.72	4.15	0.0	1.35	5.6	0.0	3.17	2.65	0.0
Merged-chr1-97647772-2	chr1	97647263	97648263	+	681.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	13913.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	24.6	32.72	15.72	21.59	27.52	26.53	25.35	22.99	26.85
Merged-chr4-26345977-3	chr4	26345465	26346465	+	681.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172865, intron 1 of 4)	intron (NM_172865, intron 1 of 4)	687.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	40.62	56.68	39.77	26.99	63.91	58.68	41.19	66.33	41.22
Merged-chr1-64919483-3	chr1	64918986	64919986	+	681.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	37338.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	16.59	27.19	12.95	24.96	24.26	32.96	26.4	22.99	11.24
Merged-chr13-9504535-3	chr13	9504037	9505037	+	681.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081426, intron 2 of 36)	intron (NM_001081426, intron 2 of 36)	228012.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	15.45	10.6	12.95	11.47	12.13	12.86	2.11	6.19	8.74
Merged-chr11-117081862-2	chr11	117081362	117082362	+	681.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4514.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	11.44	20.27	24.97	12.14	17.26	28.13	21.12	11.5	8.74
Merged-chrX-75034333-3	chrX	75033856	75034856	+	681.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181584, intron 1 of 9)	L1_Mus2|LINE|L1	50549.0	NM_181584	210710.0	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	5.15	11.52	11.1	7.42	9.33	7.23	3.17	1.33	7.49
Merged-chrX-38466460-3	chrX	38465899	38466899	+	681.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9939.0	NM_001290485	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	41.19	53.45	48.1	46.56	30.32	43.4	66.54	69.86	34.97
Merged-chr7-114081739-1	chr7	114081239	114082239	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025846, intron 1 of 5)	intron (NM_025846, intron 1 of 5)	36042.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	13.16	18.43	5.55	11.47	7.0	8.84	21.12	23.88	19.36
Merged-chr2-166746695-1	chr2	166746195	166747195	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-32863.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	33.18	21.2	33.3	24.29	21.46	29.74	51.75	47.31	29.35
Merged-chr19-21128661-1	chr19	21128161	21129161	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23951.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	9.15	17.97	14.8	17.54	20.99	31.35	20.07	20.34	21.86
Merged-chr4-107179352-1	chr4	107178852	107179852	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025617)	promoter-TSS (NM_025617)	722.0	NM_029565	56374.0	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	70.93	76.49	92.5	69.5	68.58	73.14	91.89	85.34	62.45
Merged-chr9-7839194-3	chr9	7838693	7839693	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2136.0	NM_007465	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	9.15	7.37	6.47	7.42	7.46	2.41	13.73	10.61	11.87
Merged-chr5-108269486-1	chr5	108268986	108269986	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_026106, exon 1 of 3)	5' UTR (NM_026106, exon 1 of 3)	589.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	111.55	128.1	138.74	85.69	101.23	116.55	102.45	115.85	122.41
Merged-chr7-128460681-3	chr7	128460138	128461138	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347641, intron 1 of 12)	intron (NM_001347641, intron 1 of 12)	875.0	NM_009383	21843.0	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	65.21	68.2	81.4	66.8	73.71	77.97	77.1	62.35	73.07
Merged-chr3-96171206-1	chr3	96170706	96171706	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181409, exon 17 of 17)	exon (NM_181409, exon 17 of 17)	-1300.0	NM_153053	107701.0	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	56.06	72.8	39.77	50.6	52.72	81.99	36.97	65.44	42.47
Merged-chr16-38562430-1	chr16	38561930	38562930	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-384.0	NM_001205287	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	105.83	108.75	48.1	78.94	89.1	70.73	82.38	84.9	37.47
Merged-chr2-58199605-2	chr2	58199083	58200083	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35609.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	10.3	7.37	3.7	12.82	7.93	12.86	14.79	11.05	17.49
Merged-chr3-154318009-1	chr3	154317509	154318509	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010713, intron 6 of 8)	intron (NM_010713, intron 6 of 8)	12551.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	2.29	1.38	1.85	7.42	2.33	1.61	3.17	1.77	7.49
Merged-chr11-50224061-2	chr11	50223564	50224564	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1271.0	NM_145926	103534.0	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	113.84	86.63	69.37	109.98	74.64	88.42	83.44	99.49	47.46
Merged-chr6-108599482-1	chr6	108598982	108599982	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104577, intron 3 of 6)	MLTR14|LTR|ERV1	23685.0	NR_040757	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	30.89	22.58	24.05	14.84	21.93	16.08	20.07	11.05	9.99
Merged-chr16-10399361-1	chr16	10398861	10399861	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3896.0	NM_001291001	70426.0	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	3.43	3.23	5.55	3.37	0.47	0.0	0.0	0.44	1.25
Merged-chr5-140742069-2	chr5	140741575	140742575	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173405, intron 3 of 7)	intron (NM_173405, intron 3 of 7)	17948.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	13.16	7.37	1.85	4.05	6.06	16.08	5.28	5.31	3.75
Merged-chr10-20475029-1	chr10	20474529	20475529	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347366, intron 2 of 11)	intron (NM_001347366, intron 2 of 11)	73299.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	10.3	4.15	8.32	4.72	7.46	3.22	3.17	2.21	6.25
Merged-chr7-79475002-1	chr7	79474502	79475502	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8729.0	NM_017462	18975.0	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.57	3.23	9.25	4.05	1.4	4.82	2.11	1.33	2.5
Merged-chr11-22853557-1	chr11	22853057	22854057	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	6178.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	7.44	8.75	16.65	20.92	11.66	11.25	11.62	11.5	7.49
Merged-chr1-51911407-1	chr1	51910907	51911907	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010863, intron 1 of 29)	intron (NM_010863, intron 1 of 29)	4571.0	NM_001161817	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	5.15	4.15	0.0	4.05	2.33	8.84	0.0	3.54	3.12
Merged-chr17-87154621-1	chr17	87154121	87155121	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	40321.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	72.08	91.24	74.0	107.95	114.29	79.58	3.17	2.65	3.75
Merged-chr5-90881129-1	chr5	90880629	90881629	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10116.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	73.79	39.63	32.37	113.35	61.11	65.91	51.75	16.36	14.36
Merged-chr11-28202310-1	chr11	28201810	28202810	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	382014.0	NM_001166661	216613.0	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	1.14	1.38	5.55	5.4	2.8	4.02	4.22	6.63	9.99
Merged-chr6-84058816-1	chr6	84058316	84059316	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	39430.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	10.3	4.61	7.4	13.49	13.53	12.06	7.39	12.82	3.75
Merged-chr4-138327382-1	chr4	138326882	138327882	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-1086.0	NM_026880	68943.0	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0.0	0.92	2.77	1.35	2.33	2.41	24.29	29.18	46.22
Merged-chr14-70241651-1	chr14	70241151	70242151	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360229, intron 6 of 12)	RLTR12B|LTR|ERVK	-33980.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	1.72	3.23	0.0	2.7	5.6	3.22	6.34	8.84	3.75
Merged-chr18-7703651-1	chr18	7703151	7704151	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76788.0	NM_001161620	75739.0	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	1.72	0.92	1.85	3.37	0.47	0.8	6.34	2.65	5.0
Merged-chr4-33249365-1	chr4	33248865	33249865	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	-578.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	139.01	161.74	109.14	132.24	102.63	115.75	176.38	188.81	96.18
Merged-chr2-3788518-1	chr2	3788018	3789018	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75060.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	17.73	8.29	12.95	10.8	10.73	13.66	5.28	3.54	2.5
Merged-chr4-32486031-1	chr4	32485531	32486531	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	68596.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.86	5.99	9.25	2.7	4.67	7.23	5.28	1.77	2.5
Merged-chr11-50430436-2	chr11	50429939	50430939	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172557, intron 1 of 17)	intron (NM_172557, intron 1 of 17)	672.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	226.53	164.5	110.99	226.71	168.41	121.37	192.23	130.88	64.33
Merged-chr9-123270191-1	chr9	123269691	123270691	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9402.0	NM_001002267	72309.0	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	8.58	2.3	6.47	3.37	2.33	1.61	1.06	2.65	3.75
Merged-chr17-17386354-1	chr17	17385854	17386854	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025934, intron 7 of 9)	MTD|LTR|ERVL-MaLR	12022.0	NM_025934	67045.0	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	5.15	7.37	1.85	6.07	3.73	7.23	3.17	1.77	3.12
Merged-chr1-39608679-1	chr1	39608179	39609179	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31332.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	7.44	3.69	5.55	2.02	7.0	4.82	9.51	0.88	9.37
Merged-chr19-37704124-1	chr19	37703624	37704624	+	681.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6316.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	4.0	2.76	7.4	3.37	0.93	0.0	1.06	0.44	8.74
Merged-chr14-75833094-1	chr14	75832594	75833594	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11870.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	51.48	53.91	35.15	54.65	22.86	61.89	52.81	48.64	38.1
Merged-chr13-37761147-1	chr13	37760647	37761647	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64891.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	10.87	6.45	5.55	16.87	10.26	10.45	10.56	3.98	8.12
Merged-chr13-37880734-1	chr13	37880234	37881234	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	-7700.0	NR_033218	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	44.62	38.25	38.85	64.1	53.18	21.7	36.97	35.82	10.62
Merged-chr5-3512723-1	chr5	3512223	3513223	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-31110.0	NM_001042501	68152.0	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.72	5.07	1.85	12.82	8.86	8.04	8.45	2.65	6.25
Merged-chr2-143834273-1	chr2	143833773	143834773	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	28900.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	5.72	5.07	12.02	8.77	3.73	4.82	5.28	2.65	6.25
Merged-chr3-52066461-1	chr3	52065961	52066961	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	38545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.58	2.3	0.0	2.02	2.33	0.0	2.11	1.77	3.12
Merged-chr1-91258016-1	chr1	91257516	91258516	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 3 of 10)	intron (NM_001355764, intron 3 of 10)	7450.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	12.01	14.75	27.75	11.47	13.53	17.68	13.73	11.5	6.25
Merged-chr16-38773022-1	chr16	38772522	38773522	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178924)	TTS (NM_178924)	27181.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	8.01	5.53	8.32	5.4	5.6	8.84	7.39	4.42	2.5
Merged-chr4-138178110-1	chr4	138177610	138178610	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 22 of 32)	intron (NM_001355699, intron 22 of 32)	14901.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	6.29	11.52	9.25	11.47	13.53	8.84	0.0	2.65	2.5
Merged-chr11-58103530-1	chr11	58103030	58104030	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	-440.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	90.38	90.31	66.6	62.07	61.58	65.91	40.14	22.11	22.48
Merged-chr15-76805230-1	chr15	76804730	76805730	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	B3|SINE|B2	12940.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	22.88	15.67	10.17	22.27	14.93	20.09	12.67	10.61	9.37
Merged-chr10-56374752-1	chr10	56374252	56375252	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	1.72	1.38	1.85	2.7	4.2	0.8	1.06	2.65	2.5
Merged-chr1-191098793-1	chr1	191098293	191099293	+	681.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030060, intron 1 of 2)	intron (NM_030060, intron 1 of 2)	379.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	72.65	39.63	67.52	78.94	34.52	53.85	69.71	34.49	25.61
Merged-chr14-10229337-1	chr14	10228837	10229837	+	681.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	intron (NM_001360141, intron 5 of 9)	224121.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	5.15	7.83	3.7	2.02	3.73	3.22	7.39	5.31	11.24
Merged-chr1-86416485-3	chr1	86415993	86416993	+	680.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9836.0	NM_027966	71863.0	Mm.179627	NM_027966	ENSMUSG00000036574	Tex44	1700019O17Rik	testis expressed 44	protein-coding	140.73	147.91	59.2	89.06	71.38	114.14	108.79	129.11	61.83
Merged-chr17-88524193-2	chr17	88523695	88524695	+	680.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5929.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	13.16	7.37	9.25	3.37	3.27	11.25	2.11	6.63	2.5
Merged-chr10-13295279-2	chr10	13294767	13295767	+	680.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	29022.0	NM_001195096	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	13.16	13.82	20.35	28.34	14.46	12.06	12.67	7.96	11.87
Merged-chr3-131552783-2	chr3	131552255	131553255	+	680.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12013.0	NM_001289479	23971.0	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	3.43	5.07	1.85	6.07	5.6	4.82	3.17	6.63	2.5
Merged-chr1-151422373-3	chr1	151421889	151422889	+	680.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025819, intron 2 of 19)	intron (NM_025819, intron 2 of 19)	6046.0	NM_025819	66875.0	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	10.87	12.9	9.25	21.59	8.86	11.25	10.56	5.31	16.24
Merged-chr2-38346587-3	chr2	38346097	38347097	+	680.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	-4711.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	7.44	3.23	11.1	4.72	5.6	0.0	1.06	0.88	3.75
Merged-chr19-12000887-2	chr19	12000403	12001403	+	680.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35059.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	7.44	2.76	3.7	5.4	3.27	2.41	7.39	5.31	5.0
Merged-chr14-25857319-2	chr14	25856807	25857807	+	680.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013469, intron 1 of 14)	MIR3|SINE|MIR	15152.0	NM_013469	11744.0	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	28.03	29.95	17.57	16.19	34.06	20.9	21.12	19.01	16.24
Merged-chr8-67515977-2	chr8	67515452	67516452	+	680.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11B|LTR|ERVK	-7902.0	NM_008674	17962.0	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	4.0	7.37	7.4	4.72	2.33	0.0	8.45	3.1	8.12
Merged-chr5-143509912-2	chr5	143509419	143510419	+	680.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	18074.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	29.75	35.94	30.52	36.43	36.39	33.76	40.14	19.46	13.12
Merged-chr10-94476958-3	chr10	94476466	94477466	+	680.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	RLTR20D|LTR|ERVK	-37891.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	41.19	33.64	31.45	80.29	25.66	58.68	50.7	67.65	36.22
Merged-chr17-47795588-3	chr17	47795103	47796103	+	680.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9859.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	4.0	5.53	3.7	4.72	0.93	7.23	3.17	3.54	0.62
Merged-chr12-105026315-2	chr12	105025823	105026823	+	680.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4818.0	NR_037229	100526471.0		NR_037229	ENSMUSG00000106366	Mir3069	mir-3069|mmu-mir-3069	microRNA 3069	ncRNA	4.0	5.53	3.7	6.07	5.6	6.43	1.06	3.54	14.36
Merged-chr7-139950554-4	chr7	139950063	139951063	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6707.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	9.15	17.05	11.1	26.99	17.26	28.13	46.47	32.72	28.1
Merged-chr10-127580016-2	chr10	127579470	127580470	+	680.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 20 of 88)	intron (NM_008512, intron 20 of 88)	41178.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	10.3	3.23	11.1	15.52	5.6	25.72	10.56	4.42	16.24
Merged-chr19-34666303-2	chr19	34665864	34666864	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25475.0	NM_008331	15957.0	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	5.15	1.84	0.0	0.67	3.27	2.41	2.11	3.1	1.25
Merged-chr5-5206236-2	chr5	5205724	5206724	+	680.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 4 of 14)	intron (NM_011074, intron 4 of 14)	59844.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.29	6.91	11.1	9.45	5.13	8.04	5.28	6.19	5.62
Merged-chr11-75472857-3	chr11	75472345	75473345	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4795.0	NM_027249	380712.0	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	5.72	3.69	3.7	5.4	2.33	3.22	7.39	3.54	6.87
Merged-chr1-152796005-1	chr1	152795505	152796505	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4148.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	60.64	53.45	81.4	37.78	20.99	32.15	54.92	46.43	38.72
Merged-chr8-90869859-1	chr8	90869359	90870359	+	680.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	MIR|SINE|MIR	41024.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	59.49	44.7	69.37	118.08	90.04	94.85	92.94	72.52	43.72
Merged-chr11-6389761-3	chr11	6389226	6390226	+	680.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-5399.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	69.22	46.54	47.17	47.23	34.99	65.91	59.15	35.37	30.6
Merged-chr4-136181540-1	chr4	136181040	136182040	+	680.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177733, intron 4 of 6)	intron (NM_177733, intron 4 of 6)	758.0	NM_001305399	242705.0	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	4.58	2.3	7.4	8.1	3.73	8.84	2.11	0.44	1.87
Merged-chr11-60333348-2	chr11	60332850	60333850	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359810, intron 1 of 12)	intron (NM_001359810, intron 1 of 12)	19555.0	NM_153080	216810.0	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	7.44	6.91	8.32	5.4	2.33	13.66	1.06	4.42	5.0
Merged-chr18-4924217-2	chr18	4923700	4924700	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111714.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	9.15	15.21	12.02	7.42	5.6	22.51	5.28	2.65	4.37
Merged-chr15-101231216-2	chr15	101230708	101231708	+	680.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019518, intron 7 of 7)	intron (NM_019518, intron 7 of 7)	-6022.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	2.29	1.84	1.85	2.02	1.87	11.25	7.39	0.44	2.5
Merged-chrX-20798356-2	chrX	20797861	20798861	+	680.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50182.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	9.15	3.23	3.7	13.49	7.0	6.43	10.56	1.77	1.25
Merged-chr8-11473920-1	chr8	11473420	11474420	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-4009.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	29.17	40.09	31.45	31.04	26.59	24.92	45.42	28.74	29.35
Merged-chr17-46342497-2	chr17	46341989	46342989	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14466.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	41.76	43.31	29.6	35.76	25.19	41.8	32.74	57.04	44.97
Merged-chr13-114970379-1	chr13	114969879	114970879	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033228, intron 24 of 28)	intron (NM_001033228, intron 24 of 28)	-38279.0	NM_008396	16398.0	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5|GPIa	integrin alpha 2	protein-coding	2.29	5.99	0.0	2.02	1.87	6.43	3.17	0.44	12.49
Merged-chr16-38392323-1	chr16	38391823	38392823	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30133.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	12.59	11.52	8.32	20.24	17.26	12.06	15.84	10.61	5.0
Merged-chr18-42781695-1	chr18	42781195	42782195	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	117811.0	NR_073583	72930.0	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.57	1.38	1.85	2.02	0.93	3.22	1.06	3.98	0.0
Merged-chr4-155549024-1	chr4	155548524	155549524	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-13357.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	14.87	24.88	3.7	7.42	7.93	11.25	16.9	8.84	16.86
Merged-chr11-96278954-2	chr11	96278457	96279457	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_010461	15416.0	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.57	0.92	5.55	0.67	1.4	1.61	1.06	0.0	1.25
Merged-chr7-89335509-3	chr7	89335067	89336067	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	3220.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	13.16	7.37	2.77	10.8	8.86	4.82	7.39	11.94	1.25
Merged-chr3-55293188-2	chr3	55292702	55293702	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	50838.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	3.43	6.91	3.7	5.4	7.93	11.25	5.28	3.98	3.12
Merged-chr12-3825170-1	chr12	3824670	3825670	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	UCON10|Unknown|Unknown	18010.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	22.88	17.51	22.2	17.54	14.46	11.25	46.47	26.09	19.98
Merged-chr11-49713593-1	chr11	49713093	49714093	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_212484)	promoter-TSS (NM_212484)	-871.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	4.58	5.99	5.55	4.05	7.93	10.45	7.39	7.52	2.5
Merged-chr14-105815442-1	chr14	105814942	105815942	+	680.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81377.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	2.86	0.0	5.55	2.7	2.8	0.0	1.06	0.0	1.25
Merged-chr15-28316046-2	chr15	28315549	28316549	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133365, intron 35 of 78)	intron (NM_133365, intron 35 of 78)	112283.0	NM_133365	110082.0	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	4.58	1.84	3.7	2.7	0.47	4.02	1.06	0.88	1.25
Merged-chr6-124779772-2	chr6	124779263	124780263	+	680.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302555)	promoter-TSS (NM_001302555)	-36.0	NM_001302555	16977.0	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	5.72	3.69	0.0	9.45	2.8	1.61	0.0	0.44	5.0
Merged-chr1-43446991-3	chr1	43446491	43447491	+	680.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	1240.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	30.89	27.65	19.42	17.54	25.19	24.92	57.03	61.9	25.61
Merged-chr4-148115712-3	chr4	148115178	148116178	+	680.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027426, exon 2 of 7)	exon (NM_027426, exon 2 of 7)	15020.0	NM_027426	70433.0	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	1.14	0.92	1.85	4.72	1.87	1.61	5.28	0.88	2.5
Merged-chr4-43469612-2	chr4	43469106	43470106	+	680.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	14103.0	NM_019436	54390.0	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	52.06	57.6	73.07	72.87	62.51	77.97	61.26	72.07	45.59
Merged-chr13-23598126-1	chr13	23597626	23598626	+	680.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	-12156.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	7.44	6.45	4.62	6.07	1.87	0.8	1.06	8.4	2.5
Merged-chr6-117905476-3	chr6	117904968	117905968	+	680.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166432, intron 1 of 3)	intron (NM_001166432, intron 1 of 3)	-1314.0	NM_001166430	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	77.8	88.47	61.05	49.25	47.58	61.09	77.1	72.96	58.71
Merged-chr1-36591589-3	chr1	36591094	36592094	+	680.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	1738.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	9.15	2.76	4.62	0.67	3.27	7.23	9.51	3.54	3.75
Merged-chr16-43805837-1	chr16	43805337	43806337	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	43616.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	3.43	0.0	1.85	5.4	4.2	3.22	3.17	1.77	2.5
Merged-chr7-142284096-1	chr7	142283596	142284596	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_1-I_MM-int|LTR|ERVK	-9733.0	NM_001199309	100043627.0	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	17.16	19.35	24.05	13.49	15.86	24.11	6.34	8.84	14.36
Merged-chr14-51057542-1	chr14	51057042	51058042	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001011875)	promoter-TSS (NM_001011875)	-300.0	NM_001011875	497106.0	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	20.59	11.52	9.25	10.12	15.86	20.09	9.51	10.17	8.74
Merged-chr5-37971892-1	chr5	37971392	37972392	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-67338.0	NM_001289536	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	5.15	5.07	0.0	2.7	3.73	4.82	2.11	3.98	2.5
Merged-chr15-36540951-1	chr15	36540451	36541451	+	680.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025712, intron 4 of 13)	intron (NM_025712, intron 4 of 13)	14622.0	NM_001347022	66696.0	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	4.58	3.69	5.55	6.07	6.53	0.8	3.17	2.21	0.0
Merged-chr6-112752711-3	chr6	112752227	112753227	+	680.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080448, intron 12 of 21)	intron (NM_080448, intron 12 of 21)	-56057.0	NM_001167730	58186.0	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	35.47	18.43	33.3	21.59	13.53	28.13	9.51	14.59	15.61
Merged-chr11-120547650-3	chr11	120547134	120548134	+	680.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033231, intron 1 of 4)	RLTR42|LTR|ERVK	2093.0	NM_001033231	192173.0	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	17.73	8.29	9.25	14.17	11.2	7.23	16.9	20.34	6.87
Merged-chr1-152521060-3	chr1	152520625	152521625	+	680.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016846, intron 17 of 17)	intron (NM_016846, intron 17 of 17)	104092.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.44	6.91	0.0	8.1	7.0	10.45	7.39	2.65	4.37
Merged-chrX-16894629-2	chrX	16894124	16895124	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010883, exon 2 of 3)	5' UTR (NM_010883, exon 2 of 3)	17150.0	NM_010883	17986.0	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	1.14	0.46	3.7	0.67	0.93	3.22	1.06	0.0	0.0
Merged-chr18-36510398-2	chr18	36509836	36510836	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	5469.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	10.3	6.45	1.85	10.12	6.06	4.02	7.39	6.63	8.74
Merged-chr1-43457136-2	chr1	43456641	43457641	+	680.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	11390.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.86	8.75	5.55	10.12	4.67	4.82	10.56	8.84	12.49
Merged-chr3-89319714-2	chr3	89319207	89320207	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010108, intron 1 of 4)	CpG	3172.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	4.58	1.84	1.85	1.35	3.73	0.8	4.22	2.65	2.5
Merged-chr14-75791224-2	chr14	75790732	75791732	+	680.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4195.0	NM_026232	67554.0	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	52.63	42.85	43.47	42.51	37.32	34.56	62.31	41.56	43.72
Merged-chr7-102636857-3	chr7	102636364	102637364	+	680.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3384.0	NM_146325	258322.0	Mm.377435	NM_146325	ENSMUSG00000073971	Olfr554	MOR25-1	olfactory receptor 554	protein-coding	5.15	7.37	5.55	2.02	6.53	0.0	6.34	1.33	2.5
Merged-chr12-72408636-1	chr12	72408136	72409136	+	680.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_153457, exon 1 of 9)	5' UTR (NM_153457, exon 1 of 9)	418.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	1.14	1.38	5.55	1.35	1.4	1.61	6.34	3.54	6.87
Merged-chr15-50920114-3	chr15	50919615	50920615	+	680.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-30074.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	8.58	1.38	0.0	10.12	4.2	3.22	4.22	4.42	1.25
Merged-chr8-88755356-3	chr8	88754843	88755843	+	680.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58315.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	1.72	2.3	3.7	2.7	0.47	7.23	3.17	3.54	0.0
Merged-chr5-72199075-2	chr5	72198557	72199557	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-4272.0	NR_003966	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.0	2.3	2.77	8.1	3.27	4.02	2.11	0.88	6.25
Merged-chr4-142071758-2	chr4	142071259	142072259	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-12539.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	45.76	55.29	45.32	57.35	65.31	45.01	81.33	68.09	49.34
Merged-chr10-122804064-2	chr10	122803578	122804578	+	680.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 3 of 9)	intron (NM_001110218, intron 3 of 9)	124763.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	8.01	3.69	7.4	2.7	4.2	7.23	2.11	2.65	12.49
Merged-chr3-136329221-2	chr3	136328723	136329723	+	680.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3157.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	31.46	30.87	27.75	19.57	17.26	51.44	20.07	29.63	22.48
Merged-chr1-91414205-4	chr1	91413766	91414766	+	680.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360900)	promoter-TSS (NM_001360900)	-228.0	NM_001360900	55927.0	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	13.73	3.69	11.1	14.84	7.46	9.65	15.84	8.84	5.0
Merged-chr17-34206065-3	chr17	34205534	34206534	+	680.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011530, intron 3 of 11)	intron (NM_011530, intron 3 of 11)	1555.0	NM_011530	21355.0	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	18.31	18.43	18.5	10.12	6.53	16.08	26.4	30.07	11.24
Merged-chr9-90262727-3	chr9	90262225	90263225	+	680.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	L1MA4|LINE|L1	8044.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	41.19	34.1	31.45	31.71	15.39	38.58	52.81	49.96	21.86
Merged-chr9-64829888-1	chr9	64829388	64830388	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162917, intron 2 of 34)	URR1B|DNA|hAT-Charlie	18877.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	100.68	115.66	70.3	116.73	96.1	46.62	106.67	124.25	52.46
Merged-chr6-90496447-2	chr6	90495948	90496948	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33872.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	6.29	2.3	0.0	6.07	5.6	9.65	5.28	0.44	3.75
Merged-chr1-85758178-1	chr1	85757678	85758678	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6230.0	NR_106172	102466882.0		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	2.86	0.46	0.0	1.35	0.47	0.0	2.11	0.0	3.75
Merged-chr3-75699303-1	chr3	75698803	75699803	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43572.0	NR_040539	69193.0	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	4.0	1.38	1.85	3.37	2.33	1.61	2.11	5.31	7.49
Merged-chr18-57717295-2	chr18	57716782	57717782	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 6 of 6)	MLTR14|LTR|ERV1	62713.0	NR_152224	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	1.72	3.69	9.25	4.72	0.93	1.61	11.62	7.52	9.99
Merged-chr2-83689596-2	chr2	83689096	83690096	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-34801.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.0	4.15	1.85	3.37	5.13	4.82	4.22	0.44	6.25
Merged-chr9-20727073-2	chr9	20726597	20727597	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357635)	promoter-TSS (NM_001357635)	-94.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	2.86	2.3	0.92	0.67	0.93	1.61	4.22	0.88	0.0
Merged-chr4-102609832-1	chr4	102609332	102610332	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	19989.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	30.89	15.21	9.25	17.54	10.26	10.45	8.45	4.86	11.24
Merged-chr8-25974368-1	chr8	25973868	25974868	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	RSINE1|SINE|B4	2376.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	13.73	16.13	18.5	29.69	16.79	24.11	132.02	114.08	76.82
Merged-chr1-184048104-1	chr1	184047604	184048604	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	13723.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	20.02	26.26	33.3	18.22	10.26	15.27	31.69	30.95	22.48
Merged-chr4-11145240-1	chr4	11144740	11145740	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11143.0	NR_030455	735261.0		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	12.59	6.45	9.25	8.1	6.06	6.43	8.45	6.19	9.99
Merged-chr6-29433693-1	chr6	29433193	29434193	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311074, exon 1 of 47)	exon (NM_001311074, exon 1 of 47)	437.0	NM_001311074	68794.0	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	3.43	0.46	7.4	3.37	2.33	0.0	6.34	1.77	6.25
Merged-chr2-73419494-2	chr2	73418983	73419983	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	-33003.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	4.0	1.84	1.85	3.37	2.33	0.0	4.22	4.42	0.0
Merged-chr2-24365582-1	chr2	24365082	24366082	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2093.0	NM_001355231	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	12.59	17.51	10.17	8.1	4.2	5.63	19.01	9.29	8.12
Merged-chr4-83327661-2	chr4	83327160	83328160	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	25.17	23.5	23.12	10.8	13.53	28.13	40.14	41.12	28.1
Merged-chr1-131050239-1	chr1	131049739	131050739	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30394.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	9.72	4.15	3.7	1.35	4.2	3.22	8.45	7.96	2.5
Merged-chr11-11553789-1	chr11	11553289	11554289	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	64523.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	13.16	9.68	11.1	8.77	14.0	7.23	22.18	15.92	21.86
Merged-chr1-6410164-1	chr1	6409664	6410664	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50833.0	NM_001195732	620393.0	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	6.86	6.91	7.4	8.1	7.0	4.02	8.45	1.33	2.5
Merged-chr6-24155086-1	chr6	24154586	24155586	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 1 of 14)	B4A|SINE|B4	13006.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	2.29	2.76	0.92	3.37	2.8	0.8	0.0	1.77	0.0
Merged-chr7-110616467-1	chr7	110615967	110616967	+	680.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-1547.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	79.52	50.23	48.1	60.05	29.39	38.58	40.14	48.64	41.84
Merged-chr12-34808344-3	chr12	34807842	34808842	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	108753.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.43	3.23	0.92	4.05	4.2	3.22	0.0	3.54	5.0
Merged-chr1-159334424-3	chr1	159333926	159334926	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 18 of 19)	RMER1B|Other|Other	-5881.0	NR_028518	100217414.0	Mm.450690	NR_028518	ENSMUSG00000089536	Scarna3a	MBI-114	small Cajal body-specific RNA 3A	ncRNA	7.44	3.69	0.0	7.42	6.06	6.43	5.28	0.44	3.75
Merged-chr9-13663418-1	chr9	13662918	13663918	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	958.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	20.59	28.11	26.82	44.53	22.39	19.29	30.63	33.6	30.6
Merged-chr4-134401597-2	chr4	134401090	134402090	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285872, intron 1 of 10)	(GGGTG)n|Simple_repeat|Simple_repeat	-1322.0	NM_001285874	100163.0	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.0	2.76	0.0	5.4	0.93	1.61	3.17	0.88	1.25
Merged-chr10-125350548-1	chr10	125350048	125351048	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-21585.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	4.58	4.61	14.8	10.12	7.93	4.82	6.34	6.63	4.37
Merged-chr13-34223258-1	chr13	34222758	34223758	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	60294.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.43	9.68	7.4	8.77	5.13	6.43	1.06	6.63	1.25
Merged-chr13-94106086-1	chr13	94105586	94106586	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	48290.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	12.01	4.61	1.85	4.72	3.27	4.02	5.28	6.19	4.37
Merged-chr8-33629802-1	chr8	33629302	33630302	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178648, intron 4 of 7)	intron (NM_178648, intron 4 of 7)	12174.0	NM_178648	108159.0	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	1.14	3.69	5.55	6.07	5.13	4.82	4.22	3.1	1.25
Merged-chr6-108127882-3	chr6	108127358	108128358	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145937, intron 7 of 8)	intron (NM_145937, intron 7 of 8)	57725.0	NM_145937	58911.0	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	8.01	4.61	9.25	11.47	9.8	4.82	5.28	7.07	8.12
Merged-chr8-108692443-2	chr8	108691941	108692941	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-22203.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	102.4	74.19	44.4	112.68	56.45	92.44	76.05	86.22	50.59
Merged-chr14-62277950-2	chr14	62277450	62278450	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173419, intron 1 of 1)	intron (NM_173419, intron 1 of 1)	15029.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	14.3	17.05	33.3	31.04	18.66	35.37	29.57	32.28	24.36
Merged-chr8-11163644-1	chr8	11163144	11164144	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149161.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.86	0.46	0.0	1.35	0.93	3.22	0.0	0.44	7.49
Merged-chr6-88903449-1	chr6	88902949	88903949	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011906, intron 1 of 11)	intron (NM_011906, intron 1 of 11)	1198.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	205.37	234.54	196.09	225.36	243.98	176.03	259.82	323.22	131.15
Merged-chr1-105622858-1	chr1	105622358	105623358	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013784, intron 14 of 30)	L1MA4A|LINE|L1	40818.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	6.29	4.15	1.85	10.12	7.0	8.84	2.11	8.84	2.5
Merged-chrX-159995951-1	chrX	159995451	159996451	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163085, intron 1 of 28)	intron (NM_001163085, intron 1 of 28)	7518.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	7.44	4.61	3.7	4.72	6.06	0.0	4.22	1.33	8.74
Merged-chr14-19778118-2	chr14	19777614	19778614	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008695, exon 5 of 21)	exon (NM_008695, exon 5 of 21)	26857.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	34.32	36.4	18.5	29.69	20.99	37.78	20.07	12.82	6.87
Merged-chr1-131136141-3	chr1	131135625	131136625	+	680.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145508, intron 2 of 2)	intron (NM_145508, intron 2 of 2)	2109.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	10.87	5.99	5.55	8.1	5.13	1.61	2.11	2.21	4.37
Merged-chr13-94941380-1	chr13	94940880	94941880	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34964.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	4.0	6.45	1.85	0.67	2.33	4.82	4.22	7.52	2.5
Merged-chr6-137412173-2	chr6	137411630	137412630	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011216, intron 13 of 26)	intron (NM_011216, intron 13 of 26)	1409.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	25.17	18.43	16.65	65.45	39.65	65.11	46.47	39.8	47.46
Merged-chr6-112490942-1	chr6	112490442	112491442	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1117.0	NM_001081147	18430.0	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	4.0	0.46	2.77	1.35	4.67	0.0	1.06	0.88	1.25
Merged-chr3-88139505-1	chr3	88139005	88140005	+	680.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2867.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	188.78	224.86	168.34	242.22	278.51	208.98	240.81	289.62	135.52
Merged-chr1-84251017-3	chr1	84250519	84251519	+	679.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-32058.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	32.04	36.4	26.82	33.06	28.46	51.44	36.97	16.36	23.11
Merged-chr1-144265832-2	chr1	144265325	144266325	+	679.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16721.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	6.29	7.37	1.85	17.54	12.6	10.45	10.56	4.86	14.99
Merged-chr3-127323041-2	chr3	127322547	127323547	+	679.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	86011.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.57	1.38	2.77	4.05	5.6	0.0	4.22	0.44	0.0
Merged-chr17-24649741-2	chr17	24649283	24650283	+	679.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023055, intron 1 of 6)	intron (NM_023055, intron 1 of 6)	522.0	NM_001357796	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	13.73	7.83	7.4	5.4	8.86	11.25	7.39	8.4	14.99
Merged-chr4-155163454-2	chr4	155162925	155163925	+	679.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	59110.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	38.9	33.18	25.9	49.25	26.12	32.96	36.97	16.8	16.24
Merged-chr12-109525774-2	chr12	109525272	109526272	+	679.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15224.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	2.29	7.37	3.7	4.05	4.2	3.22	5.28	2.65	3.12
Merged-chr16-56771566-2	chr16	56771067	56772067	+	679.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172825, intron 4 of 15)	intron (NM_172825, intron 4 of 15)	24291.0	NM_172825	239853.0	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	2.86	2.76	7.4	3.37	1.4	6.43	3.17	2.65	1.25
Merged-chr4-11110388-3	chr4	11109914	11110914	+	679.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13544.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	6.86	5.07	7.4	2.02	4.2	3.22	3.17	3.54	1.25
Merged-chr4-154946514-3	chr4	154946002	154947002	+	679.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14421.0	NM_010419	15208.0	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hes family bHLH transcription factor 5	protein-coding	4.0	5.07	1.85	2.7	3.73	3.22	7.39	4.42	2.5
Merged-chr3-154572559-3	chr3	154572063	154573063	+	679.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24148.0	NM_009968	12972.0	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	2.29	1.84	0.0	7.42	1.4	1.61	3.17	2.65	2.5
Merged-chr9-83546062-2	chr9	83545552	83546552	+	679.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16C|LTR|ERVK	-2286.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	75.51	55.29	34.22	131.57	65.31	69.93	87.66	62.79	33.72
Merged-chr7-74976897-2	chr7	74976401	74977401	+	679.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53310.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	4.58	7.83	3.7	4.05	5.13	0.0	7.39	2.21	6.25
Merged-chr10-127165887-2	chr10	127165356	127166356	+	679.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001244618)	promoter-TSS (NM_001244618)	25.0	NM_001358578	14421.0	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	5.72	6.45	3.7	5.4	4.2	11.25	14.79	6.63	3.75
Merged-chr4-155489404-3	chr4	155488905	155489905	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1956.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	78.94	78.79	119.32	49.93	72.31	102.08	71.82	88.88	68.7
Merged-chr15-80979592-1	chr15	80979092	80980092	+	679.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357669, intron 1 of 20)	intron (NM_001357669, intron 1 of 20)	1827.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	22.88	41.93	45.32	33.06	28.92	44.21	31.69	28.3	33.72
Merged-chr18-33719378-1	chr18	33718878	33719878	+	679.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-75514.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	12.01	9.68	7.4	0.67	1.4	0.0	12.67	4.42	8.74
Merged-chr6-38874198-3	chr6	38873688	38874688	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	2002.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	86.38	73.73	48.1	84.34	52.72	53.85	82.38	79.59	53.71
Merged-chr2-166773798-1	chr2	166773298	166774298	+	679.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19969.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	8.58	8.75	9.25	6.75	4.67	3.22	10.56	6.19	2.5
Merged-chr4-155892760-1	chr4	155892260	155893260	+	679.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033490)	promoter-TSS (NM_001033490)	885.0	NM_207223	140500.0	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	34.32	33.64	48.1	38.46	55.51	51.44	24.29	16.36	14.99
Merged-chr8-46627572-2	chr8	46627075	46628075	+	679.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10284.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	14.87	15.67	7.4	19.57	10.26	19.29	14.79	15.92	20.61
Merged-chr13-89885347-2	chr13	89884848	89885848	+	679.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028012, intron 7 of 7)	B3|SINE|B2	-142836.0	NM_001134475	13003.0	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	3.43	5.07	9.25	1.35	7.46	8.04	3.17	5.31	1.25
Merged-chr14-103102583-2	chr14	103102105	103103105	+	679.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3039.0	NM_001360342	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	6.86	4.61	6.47	3.37	4.2	8.84	7.39	3.98	5.0
Merged-chr12-54637208-2	chr12	54636695	54637695	+	679.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8817.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	6.86	5.53	0.0	4.05	1.4	5.63	17.96	1.77	23.73
Merged-chr3-109480782-3	chr3	109480295	109481295	+	679.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-93212.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	19.45	32.25	12.02	31.71	19.13	28.13	17.96	8.4	16.24
Merged-chr4-43498843-3	chr4	43498330	43499330	+	679.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013377, intron 6 of 11)	intron (NM_001013377, intron 6 of 11)	5465.0	NM_001037913	622404.0	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	34.9	34.56	30.52	29.01	13.53	40.99	38.02	37.58	24.36
Merged-chr2-103968469-2	chr2	103967980	103968980	+	679.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142337, intron 1 of 3)	ID_B1|SINE|B4	-1077.0	NM_001142336	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	103.54	104.14	75.85	82.99	81.64	71.54	127.8	92.41	64.95
Merged-chr2-127506244-2	chr2	127505741	127506741	+	679.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	15151.0	NM_001291005	56461.0	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	4.0	3.69	1.85	2.7	3.27	2.41	4.22	7.96	1.87
Merged-chr2-84458765-3	chr2	84458266	84459266	+	679.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355271, intron 2 of 8)	Lx3B|LINE|L1	15408.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	21.17	14.28	14.8	3.37	6.53	24.92	11.62	14.59	7.49
Merged-chr17-6098079-3	chr17	6097579	6098579	+	679.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8751.0	NM_001103181	68842.0	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	2.86	3.69	0.92	4.72	4.67	3.22	1.06	3.98	5.0
Merged-chr11-87690378-3	chr11	87689876	87690876	+	679.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172448, intron 2 of 9)	intron (NM_172448, intron 2 of 9)	-9148.0	NR_045139	68690.0	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	6.86	7.83	3.7	6.75	12.6	11.25	16.9	4.42	5.0
Merged-chr13-55728088-2	chr13	55727593	55728593	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028281, intron 1 of 3)	intron (NM_028281, intron 1 of 3)	725.0	NM_028281	72562.0	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	68.07	93.54	71.22	62.75	70.91	97.26	67.6	82.69	69.95
Merged-chr2-5698833-2	chr2	5698338	5699338	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MTEb|LTR|ERVL-MaLR	15924.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	25.17	25.34	54.57	35.76	23.33	40.19	25.35	26.53	38.1
Merged-chr8-122273304-2	chr8	122272802	122273802	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8839.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	9.15	2.3	0.0	4.72	1.4	1.61	0.0	1.33	4.37
Merged-chr1-127261299-1	chr1	127260799	127261799	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 2 of 17)	RLTR28|LTR|ERVL	56313.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.29	9.22	5.55	16.87	4.67	18.49	11.62	4.86	12.49
Merged-chr15-96666911-3	chr15	96666406	96667406	+	679.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	-23993.0	NM_001166458	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.15	2.76	0.0	8.77	5.13	3.22	9.51	4.42	6.25
Merged-chr10-8913040-2	chr10	8912520	8913520	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26950.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	68.65	87.09	48.1	64.1	40.12	77.16	63.37	68.98	62.45
Merged-chr1-180863812-1	chr1	180863312	180864312	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145943, intron 6 of 6)	intron (NM_145943, intron 6 of 6)	12661.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	2.29	1.38	0.92	2.02	1.4	1.61	3.17	4.42	3.75
Merged-chr15-58822526-1	chr15	58822026	58823026	+	679.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	901.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	110.41	180.17	103.59	122.12	131.09	81.99	130.97	138.84	76.19
Merged-chr11-63138914-3	chr11	63138427	63139427	+	679.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302255, intron 3 of 4)	intron (NM_001302255, intron 3 of 4)	6124.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	4.58	4.15	9.25	10.8	6.53	12.86	8.45	6.63	4.37
Merged-chr12-100849549-2	chr12	100849050	100850050	+	679.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145448, intron 7 of 12)	intron (NM_145448, intron 7 of 12)	49974.0	NM_001177674	238377.0	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	2.29	2.76	3.7	2.02	2.33	2.41	3.17	2.65	0.0
Merged-chr1-34602556-2	chr1	34602063	34603063	+	679.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22870.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	1.14	2.3	2.77	5.4	2.8	1.61	6.34	2.65	0.0
Merged-chr1-125431008-2	chr1	125430505	125431505	+	679.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	RMER1A|Other|Other	4722.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	45.19	62.67	32.37	43.86	28.92	40.19	61.26	87.11	65.58
Merged-chr8-46835792-2	chr8	46835309	46836309	+	679.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008391, intron 6 of 8)	intron (NM_008391, intron 6 of 8)	96064.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	32.04	28.11	25.9	18.22	15.86	41.8	21.12	22.55	27.48
Merged-chr14-64753059-2	chr14	64752543	64753543	+	679.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 21 of 39)	intron (NM_001081177, intron 21 of 39)	100512.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	16.59	10.14	13.87	15.52	15.39	13.66	11.62	11.5	18.74
Merged-chr13-55067379-3	chr13	55066887	55067887	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_121592, intron 6 of 13)	L1M2|LINE|L1	27019.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	9.15	17.97	19.42	17.54	10.73	5.63	24.29	15.92	17.49
Merged-chr14-61690355-1	chr14	61689855	61690855	+	679.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7982.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	8.01	2.3	5.55	6.07	5.13	5.63	3.17	3.1	9.99
Merged-chr8-46850743-1	chr8	46850243	46851243	+	679.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110998.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	58.35	106.44	107.29	52.63	58.78	86.81	83.44	113.19	66.82
Merged-chr3-105802676-3	chr3	105802187	105803187	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1306.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	164.75	112.89	74.92	114.03	64.84	86.01	125.69	114.08	95.55
Merged-chr7-81921827-3	chr7	81921347	81922347	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013886, intron 1 of 5)	intron (NM_013886, intron 1 of 5)	12612.0	NM_013886	29877.0	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfl3	2700022B06Rik|HRP-3|Hdgfrp3	HDGF like 3	protein-coding	8.01	5.99	4.62	9.45	5.6	3.22	10.56	6.19	7.49
Merged-chr3-127457960-1	chr3	127457460	127458460	+	679.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	B2_Mm2|SINE|B2	41155.0	NM_001327938	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.29	0.92	0.0	0.67	1.87	0.0	16.9	20.78	8.12
Merged-chr9-13301323-3	chr9	13300827	13301827	+	679.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54371.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	14.87	18.89	12.95	13.49	7.0	5.63	10.56	15.03	7.49
Merged-chr16-32194961-3	chr16	32194448	32195448	+	679.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15148.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	33.75	33.18	29.6	27.66	15.39	16.88	16.9	14.15	16.86
Merged-chr14-25467834-3	chr14	25467318	25468318	+	679.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	8633.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	26.89	18.89	14.8	38.46	19.13	16.08	16.9	11.94	6.87
Merged-chr8-70383523-2	chr8	70383012	70384012	+	679.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001004062, exon 14 of 14)	3' UTR (NM_001004062, exon 14 of 14)	9964.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	6.86	0.46	7.4	3.37	3.73	1.61	5.28	1.77	0.0
Merged-chr5-138659127-2	chr5	138658624	138659624	+	679.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36265.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	8.58	1.84	4.62	4.05	3.27	8.84	2.11	5.75	1.87
Merged-chr1-138297957-2	chr1	138297438	138298438	+	679.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24200.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.29	3.69	14.8	7.42	2.8	4.82	14.79	3.1	9.37
Merged-chrX-77413292-2	chrX	77412793	77413793	+	679.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97934.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	7.44	5.99	1.85	5.4	6.06	9.65	6.34	2.65	1.25
Merged-chr17-36947258-3	chr17	36946719	36947719	+	679.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001099632, exon 4 of 4)	exon (NM_001099632, exon 4 of 4)	4168.0	NM_001099632	386454.0	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	10.3	2.3	1.85	6.75	7.93	1.61	4.22	3.54	0.0
Merged-chr19-21037226-1	chr19	21036726	21037726	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67484.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	78.37	57.14	33.3	85.69	54.11	82.79	92.94	63.23	46.22
Merged-chr19-34228618-1	chr19	34228118	34229118	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360719, intron 3 of 10)	intron (NM_001360719, intron 3 of 10)	-4007.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	14.87	14.28	2.77	10.12	7.0	11.25	5.28	0.88	9.99
Merged-chr6-87670353-1	chr6	87669853	87670853	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024251, intron 1 of 9)	intron (NM_024251, intron 1 of 9)	1815.0	NM_024251	72103.0	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	3.43	3.69	0.0	5.4	3.73	0.0	4.22	3.54	5.0
Merged-chr2-35231223-1	chr2	35230723	35231723	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25136.0	NM_001206367	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	5.72	2.3	4.62	5.4	6.06	17.68	9.51	9.29	6.25
Merged-chr9-110841086-1	chr9	110840586	110841586	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153172, exon 6 of 6)	3' UTR (NM_153172, exon 6 of 6)	-3420.0	NM_183103	74306.0	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	17.16	12.44	7.4	12.14	7.93	16.08	10.56	8.4	19.36
Merged-chr15-67187500-2	chr15	67187007	67188007	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10625.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	8.58	11.06	13.87	9.45	4.67	18.49	15.84	11.5	1.25
Merged-chr4-33243410-1	chr4	33242910	33243910	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	5377.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	20.02	21.2	50.87	16.19	9.33	21.7	21.12	10.61	16.86
Merged-chr15-84614385-1	chr15	84613885	84614885	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-48821.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	9.15	0.92	1.85	4.05	1.4	0.0	1.06	0.0	5.0
Merged-chr6-119449182-2	chr6	119448681	119449681	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	intron (NM_009525, intron 1 of 4)	205.0	NM_001271757	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	4.58	3.23	1.85	4.05	3.27	3.22	5.28	2.21	2.5
Merged-chr12-56301845-1	chr12	56301345	56302345	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44049.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	3.43	1.38	3.7	2.02	0.0	4.82	5.28	1.33	2.5
Merged-chr19-55928992-1	chr19	55928492	55929492	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 15 of 15)	intron (NR_138565, intron 15 of 15)	33671.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.0	2.3	0.92	4.05	2.33	1.61	5.28	3.54	3.75
Merged-chr6-134253837-1	chr6	134253337	134254337	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 6 of 8)	intron (NM_001303102, intron 6 of 8)	-142492.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	8.58	5.99	5.55	4.05	3.73	8.04	6.34	1.33	2.5
Merged-chr2-73427089-1	chr2	73426589	73427589	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26800.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	8.01	6.45	2.77	4.72	1.87	6.43	5.28	5.31	3.75
Merged-chr14-76479975-1	chr14	76479475	76480475	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-8461.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	1.72	5.07	0.0	6.07	3.73	5.63	1.06	1.33	1.25
Merged-chr2-11552489-1	chr2	11551989	11552989	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	1440.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	44.05	38.25	31.45	53.3	44.78	56.27	44.36	26.53	11.87
Merged-chr9-35043199-1	chr9	35042699	35043699	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER47B|DNA|TcMar-Tigger	-73529.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.58	1.38	2.77	7.42	5.13	6.43	7.39	5.31	5.0
Merged-chr11-82036048-1	chr11	82035548	82036548	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011333, intron 1 of 2)	intron (NM_011333, intron 1 of 2)	471.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	32.04	36.4	19.42	33.74	20.53	21.7	43.3	33.6	26.23
Merged-chr2-129700392-1	chr2	129699892	129700892	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018863)	promoter-TSS (NM_018863)	-454.0	NM_018863	18610.0	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	4.0	1.84	0.0	9.45	0.93	10.45	2.11	1.77	3.12
Merged-chr18-38212336-1	chr18	38211836	38212836	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2574.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	12.01	5.53	0.0	6.75	3.27	4.82	13.73	3.1	1.87
Merged-chr15-10921098-2	chr15	10920616	10921616	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31216.0	NM_030888	81799.0	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	8.01	9.22	2.77	6.75	5.6	4.02	9.51	5.31	8.12
Merged-chr11-43634220-1	chr11	43633720	43634720	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32658.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	9.72	6.45	8.32	8.1	8.4	5.63	6.34	6.63	13.12
Merged-chrX-134540938-1	chrX	134540438	134541438	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013898, intron 1 of 1)	intron (NM_013898, intron 1 of 1)	732.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	26.31	27.65	20.35	38.46	27.99	15.27	33.8	34.05	11.24
Merged-chr12-57197206-2	chr12	57196726	57197726	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172577, exon 1 of 10)	5' UTR (NM_172577, exon 1 of 10)	246.0	NM_172577	217593.0	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	6.86	1.84	0.0	4.72	4.67	4.02	3.17	2.21	2.5
Merged-chr2-139591454-1	chr2	139590954	139591954	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356507, intron 8 of 11)	intron (NM_001356507, intron 8 of 11)	-86724.0	NM_001276489	319909.0	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	2.86	1.38	1.85	2.02	4.2	1.61	4.22	3.1	2.5
Merged-chr4-149049051-1	chr4	149048551	149049551	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	50761.0	NM_019781	56273.0	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	13.73	7.83	1.85	16.19	5.13	6.43	3.17	0.44	7.49
Merged-chr3-84356108-1	chr3	84355608	84356608	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040752, intron 3 of 3)	MER20|DNA|hAT-Charlie	23813.0	NR_040752	75309.0	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	3.43	1.38	9.25	2.7	5.13	1.61	4.22	3.54	1.25
Merged-chrX-152322968-1	chrX	152322468	152323468	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040270, intron 2 of 2)	RMER12C|LTR|ERVK	4525.0	NR_040269	72997.0	Mm.254833	NR_040269	ENSMUSG00000087403	Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	5.72	6.91	5.55	6.75	1.87	1.61	1.06	3.1	3.12
Merged-chr3-30599818-2	chr3	30599312	30600312	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	58.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	16.02	15.21	14.8	10.8	14.0	3.22	15.84	11.05	3.75
Merged-chr8-84417979-1	chr8	84417479	84418479	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	2615.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	8.58	12.9	13.87	9.45	6.06	12.86	0.0	0.88	0.0
Merged-chr10-22402646-1	chr10	22402146	22403146	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028580)	promoter-TSS (NR_028580)	-167.0	NR_028580	100038752.0	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	-	predicted gene 10825	ncRNA	0.57	0.92	3.7	0.0	0.93	0.0	2.11	0.44	2.5
Merged-chr1-170962486-1	chr1	170961986	170962986	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010187, intron 5 of 6)	intron (NM_010187, intron 5 of 6)	13585.0	NM_010187	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	3.43	6.91	6.47	10.12	5.6	11.25	6.34	2.65	5.0
Merged-chr4-102588514-1	chr4	102588014	102589014	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177982, intron 1 of 9)	intron (NM_001177982, intron 1 of 9)	956.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	34.9	25.8	27.75	18.89	6.53	11.25	21.12	22.11	6.25
Merged-chr11-52346454-1	chr11	52345954	52346954	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14408.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	8.01	4.61	5.55	3.37	1.4	0.0	9.51	7.52	8.74
Merged-chr15-53730234-1	chr15	53729734	53730734	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	-115955.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	2.86	3.69	2.77	3.37	2.33	5.63	3.17	0.44	7.49
Merged-chr4-123548314-1	chr4	123547814	123548814	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-68106.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	13.73	12.44	3.7	6.75	8.86	4.82	4.22	9.73	11.24
Merged-chr6-54933525-1	chr6	54933025	54934025	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 9 of 11)	intron (NM_001171007, intron 9 of 11)	38136.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	28.03	21.2	25.9	29.69	19.59	28.13	26.4	25.65	18.74
Merged-chr15-33340797-1	chr15	33340297	33341297	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 4 of 7)	MLT1B|LTR|ERVL-MaLR	65142.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	2.29	3.23	5.55	2.02	8.4	3.22	0.0	6.63	6.25
Merged-chr16-35870740-1	chr16	35870240	35871240	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039530, intron 1 of 16)	intron (NM_001039530, intron 1 of 16)	642.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	223.67	292.6	236.79	194.32	181.47	194.52	324.25	340.03	154.26
Merged-chr8-41283846-2	chr8	41283348	41284348	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 16 of 37)	intron (NM_023662, intron 16 of 37)	44089.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	17.73	11.52	17.57	14.17	11.66	33.76	78.16	79.59	43.72
Merged-chr6-116570071-1	chr6	116569571	116570571	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NM_146446	258438.0	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	2.29	0.92	0.0	2.7	1.4	4.82	1.06	3.1	1.25
Merged-chr15-59651457-1	chr15	59650957	59651957	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 1 of 2)	intron (NM_144549, intron 1 of 2)	2803.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	54.35	67.74	37.92	72.19	51.32	49.83	70.76	47.75	32.48
Merged-chr4-123566441-1	chr4	123565941	123566941	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-49979.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	36.61	41.47	31.45	29.69	28.46	28.13	40.14	32.72	18.74
Merged-chr10-122748579-1	chr10	122748079	122749079	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	69264.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	23.45	16.59	19.42	16.87	12.13	12.06	43.3	39.8	19.98
Merged-chr13-6922456-1	chr13	6921956	6922956	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-273685.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	5.72	2.76	1.85	1.35	2.33	0.0	1.06	4.42	5.0
Merged-chr15-96770585-1	chr15	96770085	96771085	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-70857.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.58	1.38	3.7	4.72	1.87	0.0	2.11	1.77	5.0
Merged-chr9-121354928-1	chr9	121354428	121355428	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152160, intron 1 of 17)	intron (NR_152160, intron 1 of 17)	-12030.0	NM_001357973	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	5.72	5.53	7.4	2.7	4.67	0.8	3.17	2.65	2.5
Merged-chr11-88145934-1	chr11	88145434	88146434	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	-23631.0	NM_001172099	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.57	3.23	3.7	2.7	0.0	0.0	6.34	4.42	1.87
Merged-chr1-195015138-1	chr1	195014638	195015638	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2261.0	NR_015566	320977.0	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	12.59	25.8	22.2	26.31	19.13	32.15	11.62	11.5	8.74
Merged-chr3-51719619-3	chr3	51719120	51720120	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	58441.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	35.47	36.86	31.45	25.64	11.66	17.68	31.69	10.17	13.12
Merged-chr5-142960361-1	chr5	142959861	142960861	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007984)	promoter-TSS (NM_007984)	6.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	5.72	5.53	3.7	3.37	2.8	3.22	8.45	2.21	1.87
Merged-chr7-24885108-1	chr7	24884608	24885608	+	679.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360115, intron 1 of 5)	intron (NM_001360115, intron 1 of 5)	195.0	NM_001360115	20085.0	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	127.0	130.86	124.87	87.71	92.84	139.86	136.25	103.02	97.43
Merged-chr9-51765225-1	chr9	51764725	51765725	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175535)	promoter-TSS (NM_175535)	-127.0	NM_175535	244867.0	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.57	1.38	1.85	4.05	0.93	0.0	3.17	0.88	1.25
Merged-chr14-98870073-1	chr14	98869573	98870573	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176063.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	1.72	2.3	3.7	2.7	0.93	4.82	2.11	0.88	3.75
Merged-chr10-62865341-1	chr10	62864841	62865841	+	679.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21983.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	3.43	0.0	1.85	5.4	3.27	1.61	3.17	1.77	1.25
Merged-chr19-5925544-1	chr19	5925044	5926044	+	679.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026772)	promoter-TSS (NM_026772)	-728.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	85.24	72.8	52.72	51.28	28.46	47.42	64.43	42.89	33.1
Merged-chr11-45699496-2	chr11	45699003	45700003	+	678.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-108580.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	41.76	36.86	43.47	27.66	34.52	53.05	22.18	26.97	23.11
Merged-chr7-145243245-3	chr7	145242787	145243787	+	678.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132644, intron 24 of 24)	intron (NR_132644, intron 24 of 24)	-35168.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	4.58	2.3	3.7	4.72	0.47	2.41	5.28	3.54	2.5
Merged-chr8-69985320-3	chr8	69984811	69985811	+	678.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	intron (NM_001286450, intron 1 of 12)	-10928.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	8.01	13.82	17.57	12.14	6.06	16.88	15.84	8.4	9.37
Merged-chr2-35499157-2	chr2	35498674	35499674	+	678.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37725.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	8.01	6.45	2.77	12.14	3.73	5.63	6.34	3.1	3.75
Merged-chr4-150239043-3	chr4	150238544	150239544	+	678.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	1720.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	21.74	46.54	32.37	39.13	35.92	77.97	63.37	46.87	38.1
Merged-chr13-60603495-3	chr13	60603001	60604001	+	678.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	1290.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	41.19	92.16	49.02	78.94	77.44	131.82	53.87	39.8	34.35
Merged-chr4-55342003-2	chr4	55341512	55342512	+	678.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-8030.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	7.44	7.83	10.17	11.47	8.86	6.43	7.39	5.31	10.62
Merged-chr2-167953137-3	chr2	167952639	167953639	+	678.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	20812.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	20.59	21.2	24.97	24.96	14.46	32.15	35.91	14.15	22.48
Merged-chr11-72206639-3	chr11	72206135	72207135	+	678.8222049999999	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026559)	promoter-TSS (NM_026559)	847.0	NR_155065	74477.0	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	56.63	48.84	43.47	51.28	57.85	46.62	86.61	64.11	41.22
Merged-chr5-121813015-3	chr5	121812562	121813562	+	678.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359153, intron 22 of 23)	intron (NM_001359153, intron 22 of 23)	6211.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	36.61	15.67	20.35	29.69	20.06	17.68	10.56	11.5	13.12
Merged-chr6-13609488-3	chr6	13608978	13609978	+	678.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_028990	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	4.0	4.15	14.8	6.75	1.87	5.63	10.56	1.33	6.25
Merged-chr2-61594982-2	chr2	61594492	61595492	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149323, intron 2 of 9)	MTD|LTR|ERVL-MaLR	1895.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	76.66	54.37	37.0	54.65	40.59	38.58	62.31	54.83	26.85
Merged-chr11-111327097-2	chr11	111326604	111327604	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	260940.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.86	5.53	4.62	7.42	7.0	7.23	1.06	4.42	7.49
Merged-chrX-169299779-2	chrX	169299283	169300283	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109847, intron 12 of 14)	intron (NR_109847, intron 12 of 14)	20589.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	5.72	1.38	0.0	0.67	0.47	0.0	0.0	1.77	1.87
Merged-chr11-57517179-2	chr11	57516665	57517665	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026342, intron 1 of 13)	MTE2a|LTR|ERVL-MaLR	1479.0	NM_001168667	67726.0	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	6.29	5.53	0.0	3.37	7.46	5.63	5.28	3.98	0.62
Merged-chr18-67612431-2	chr18	67611947	67612947	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28908.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	2.86	3.69	3.7	8.1	7.0	0.8	6.34	2.21	5.0
Merged-chr9-119430530-2	chr9	119430019	119431019	+	678.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007397, intron 6 of 9)	intron (NM_007397, intron 6 of 9)	-14441.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.0	0.46	11.1	1.35	0.93	9.65	2.11	0.44	1.25
Merged-chr4-133854871-2	chr4	133854379	133855379	+	678.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 17 of 21)	intron (NM_009097, intron 17 of 21)	19852.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	29.75	24.88	5.55	39.81	27.52	50.64	11.62	11.94	1.25
Merged-chr5-31908180-2	chr5	31907677	31908677	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	210127.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	8.01	6.45	9.25	7.42	3.27	11.25	12.67	11.5	6.25
Merged-chr14-57378309-1	chr14	57377809	57378809	+	678.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030004, intron 2 of 7)	intron (NM_030004, intron 2 of 7)	20174.0	NM_030004	68631.0	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	26.31	16.59	14.8	16.19	19.59	20.09	13.73	10.61	12.49
Merged-chr10-42637429-3	chr10	42636921	42637921	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41495.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	2.29	3.69	0.0	4.05	1.4	1.61	3.17	1.33	0.0
Merged-chr14-61648355-3	chr14	61647844	61648844	+	678.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028264, intron 1 of 6)	CpG	-16234.0	NR_029733	387174.0		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	64.64	54.37	58.27	95.81	41.05	65.91	87.66	67.21	38.72
Merged-chr9-31082488-1	chr9	31081988	31082988	+	678.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49311.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	1.72	1.84	3.7	2.7	3.27	0.0	0.0	0.88	0.62
Merged-chr19-17364984-1	chr19	17364484	17365484	+	678.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	7860.0	NM_010265	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.73	4.61	7.4	9.45	5.13	3.22	9.51	3.98	2.5
Merged-chr4-132639553-2	chr4	132639041	132640041	+	678.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010166, intron 1 of 17)	intron (NM_010166, intron 1 of 17)	495.0	NM_010166	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	56.06	37.78	33.3	62.07	55.05	82.79	77.1	60.13	38.72
Merged-chr10-119152723-2	chr10	119152218	119153218	+	678.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59813.0	NR_045348	73400.0	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	12.59	8.29	3.7	12.14	8.4	1.61	8.45	2.65	5.62
Merged-chr3-90514947-3	chr3	90514545	90515545	+	678.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011309)	promoter-TSS (NM_011309)	610.0	NM_009113	20196.0	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	26.31	27.19	38.85	22.94	21.93	20.9	28.52	13.27	22.48
Merged-chr4-62667408-2	chr4	62666923	62667923	+	678.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6551.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	17.73	18.89	14.8	11.47	7.93	20.09	20.07	11.5	19.98
Merged-chr8-125733640-3	chr8	125733175	125734175	+	678.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310688)	promoter-TSS (NM_001310688)	-528.0	NM_025636	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	72.08	101.83	116.54	116.73	79.31	112.53	96.11	112.75	67.45
Merged-chr9-99200542-1	chr9	99200042	99201042	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	36697.0	NM_001244762	623459.0	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	6.29	2.76	7.4	4.72	2.33	1.61	14.79	5.31	10.62
Merged-chr2-159555076-1	chr2	159554576	159555576	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-392265.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	1.72	3.69	1.85	2.02	2.33	1.61	2.11	0.44	3.75
Merged-chr17-88102771-2	chr17	88102256	88103256	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22756.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	13.16	8.75	11.1	13.49	10.26	19.29	12.67	7.52	14.99
Merged-chr1-89942223-1	chr1	89941723	89942723	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11047.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	2.86	3.23	0.92	1.35	0.0	3.22	3.17	0.0	6.25
Merged-chr4-43735654-1	chr4	43735154	43736154	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	5620.0	NM_001348108	71406.0	Mm.33063	NM_027789	ENSMUSG00000028475	Spaar	5430416O09Rik|AI481365|Spar	small regulatory polypeptide of amino acid response	protein-coding	3.43	3.23	3.7	6.07	5.6	4.82	2.11	1.77	4.37
Merged-chrX-96158068-1	chrX	96157568	96158568	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 7 of 12)	intron (NM_010833, intron 7 of 12)	62023.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	3.43	6.91	1.85	4.72	1.87	6.43	11.62	7.52	8.12
Merged-chr19-29372273-1	chr19	29371773	29372773	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021893, intron 1 of 6)	intron (NM_021893, intron 1 of 6)	4835.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	102.97	98.61	55.5	111.33	108.7	80.38	111.96	98.16	52.46
Merged-chr3-145026924-1	chr3	145026424	145027424	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017474, intron 3 of 13)	intron (NM_017474, intron 3 of 13)	5852.0	NM_017474	23844.0	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	3.43	2.3	1.85	2.02	0.93	0.0	4.22	0.44	3.75
Merged-chr2-84557198-2	chr2	84556733	84557733	+	678.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50360.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	17.73	14.28	11.1	13.49	15.39	8.04	7.39	3.98	5.0
Merged-chr10-111389105-2	chr10	111388620	111389620	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84107.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	2.29	3.69	0.0	4.72	5.6	4.82	4.22	1.77	1.25
Merged-chrX-152003090-2	chrX	152002583	152003583	+	678.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016763, intron 2 of 5)	intron (NM_016763, intron 2 of 5)	1187.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	5.15	4.15	4.62	10.12	8.4	2.41	9.51	6.19	0.62
Merged-chr1-105982898-2	chr1	105982428	105983428	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	7354.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	52.06	57.6	29.6	55.33	30.79	61.09	72.88	64.56	29.98
Merged-chr7-43397592-2	chr7	43397081	43398081	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10699.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	10.3	11.52	24.97	5.4	14.46	11.25	6.34	10.17	18.11
Merged-chr15-103368012-1	chr15	103367512	103368512	+	678.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1221.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	3.43	8.75	11.1	4.72	0.47	3.22	7.39	2.65	8.74
Merged-chr7-122217719-1	chr7	122217219	122218219	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1777.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	21.17	24.42	14.8	19.57	20.99	27.33	22.18	21.67	15.61
Merged-chr10-91142924-1	chr10	91142424	91143424	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18961.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	1.14	5.53	3.7	4.72	0.0	6.43	5.28	2.21	0.0
Merged-chr2-60037251-2	chr2	60036806	60037806	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88434.0	NM_001001182	407823.0	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	32.61	48.38	7.4	44.53	44.78	14.47	35.91	34.93	6.87
Merged-chrX-71131626-2	chrX	71131134	71132134	+	678.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 4 of 6)	intron (NM_001081354, intron 4 of 6)	-79133.0	NM_001164190	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.0	3.23	0.0	5.4	2.8	6.43	1.06	1.77	2.5
Merged-chr12-76329180-3	chr12	76328640	76329640	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101471, exon 2 of 2)	exon (NM_001101471, exon 2 of 2)	4249.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	28.03	13.82	16.65	16.19	7.0	24.11	22.18	14.15	26.23
Merged-chr9-63556560-3	chr9	63556059	63557059	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 5 of 21)	intron (NM_030068, intron 5 of 21)	45934.0	NM_030068	78250.0	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	105.26	47.46	27.75	68.15	9.8	17.68	126.74	62.79	7.49
Merged-chr6-118137300-3	chr6	118136815	118137815	+	678.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030165, intron 1 of 7)	intron (NM_030165, intron 1 of 7)	1515.0	NM_001362149	78752.0	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	8.58	7.37	3.7	7.42	4.2	7.23	10.56	4.86	1.25
Merged-chr13-98809247-2	chr13	98808755	98809755	+	678.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	B2_Mm2|SINE|B2	6194.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	43.48	41.01	29.6	37.11	27.99	25.72	63.37	53.5	24.36
Merged-chr1-79858484-2	chr1	79858031	79859031	+	678.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009255, exon 1 of 9)	5' UTR (NM_009255, exon 1 of 9)	134.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	4.58	2.76	4.62	4.72	1.87	1.61	4.22	2.65	2.5
Merged-chr10-23979520-2	chr10	23979026	23980026	+	678.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6120.0	NM_001010828	215855.0	Mm.377237	NM_001010828	ENSMUSG00000045111	Taar6	Gm228|taR-6	trace amine-associated receptor 6	protein-coding	6.29	2.3	0.0	1.35	2.8	1.61	4.22	0.44	2.5
Merged-chr10-80305097-2	chr10	80304599	80305599	+	678.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011789, intron 5 of 13)	intron (NM_011789, intron 5 of 13)	3279.0	NM_011789	23805.0	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	1.14	0.46	0.0	4.05	1.4	4.82	1.06	0.88	1.25
Merged-chr19-55789343-2	chr19	55788834	55789834	+	678.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	47524.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.73	16.59	14.8	10.12	12.13	25.72	16.9	18.57	9.37
Merged-chr7-140078899-2	chr7	140078400	140079400	+	678.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026769, intron 1 of 5)	B3|SINE|B2	3401.0	NM_001190386	68566.0	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	8.01	4.15	1.85	2.7	1.87	1.61	4.22	0.44	1.25
Merged-chr4-142020162-2	chr4	142019641	142020641	+	678.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131014, intron 1 of 1)	B4A|SINE|B4	2243.0	NR_131014	78917.0	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	70.93	77.87	78.62	99.18	90.97	90.83	134.14	137.07	43.72
Merged-chr1-134967813-1	chr1	134967313	134968313	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278115, exon 2 of 7)	exon (NM_001278115, exon 2 of 7)	5248.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	6.86	3.69	7.4	6.07	13.06	9.65	8.45	9.29	6.25
Merged-chr2-103927631-1	chr2	103927131	103928131	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26680.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	6.86	2.76	9.25	4.72	5.13	1.61	1.06	6.63	2.5
Merged-chr9-50905479-1	chr9	50904979	50905979	+	678.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178710, intron 9 of 15)	intron (NM_178710, intron 9 of 15)	48555.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	15.45	11.06	11.1	15.52	7.93	1.61	14.79	8.84	17.49
Merged-chr2-126167369-1	chr2	126166869	126167869	+	678.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15228.0	NM_026981	69185.0	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	4.58	9.22	0.0	6.07	2.33	0.0	5.28	2.65	3.75
Merged-chr2-166711061-3	chr2	166710505	166711505	+	678.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	2827.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	184.77	151.6	124.87	158.56	88.64	106.9	200.68	189.25	102.42
Merged-chr17-73948945-3	chr17	73948516	73949516	+	678.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011723, intron 1 of 35)	intron (NM_011723, intron 1 of 35)	1180.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	171.04	163.12	142.44	160.58	168.41	154.33	234.47	279.89	131.15
Merged-chr8-95132130-3	chr8	95131645	95132645	+	678.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	10395.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	13.16	9.68	17.57	21.59	21.46	26.53	5.28	7.52	8.12
Merged-chr4-135981086-1	chr4	135980586	135981586	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025411, intron 3 of 5)	L1MA5|LINE|L1	6158.0	NM_025411	66193.0	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	58.92	62.67	29.6	74.22	62.05	57.87	78.16	60.58	43.09
Merged-chr17-28419831-2	chr17	28419358	28420358	+	678.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010220, intron 5 of 10)	intron (NM_010220, intron 5 of 10)	-54642.0	NM_021478	22157.0	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	38.33	42.39	48.1	61.4	49.92	42.6	58.09	53.94	27.48
Merged-chr18-83819176-2	chr18	83818655	83819655	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	267407.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	5.72	8.29	10.17	6.75	2.8	4.82	3.17	2.21	2.5
Merged-chr6-125149417-2	chr6	125148926	125149926	+	678.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039669, intron 1 of 9)	intron (NM_001039669, intron 1 of 9)	4202.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	114.98	61.75	39.77	113.35	77.91	43.4	41.19	39.35	30.6
Merged-chr11-54730094-2	chr11	54729593	54730593	+	678.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	ID|SINE|ID	57610.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	60.07	55.29	40.7	68.15	37.79	95.65	30.63	35.82	42.47
Merged-chr10-66881912-3	chr10	66881394	66882394	+	678.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38490.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	5.72	3.23	0.0	8.1	1.87	5.63	3.17	1.33	0.0
Merged-chr11-4297092-2	chr11	4296567	4297567	+	678.208374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30271.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	2.86	1.84	3.7	5.4	4.2	6.43	2.11	0.0	0.62
Merged-chr6-39228806-3	chr6	39228278	39229278	+	678.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22005.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	41.19	51.15	8.32	49.93	43.85	50.64	30.63	34.05	18.11
Merged-chr8-123024465-2	chr8	123023947	123024947	+	678.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	17837.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	22.31	32.25	20.35	35.76	21.93	38.58	24.29	30.07	24.98
Merged-chr13-99791020-2	chr13	99790524	99791524	+	678.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109659.0	NM_013732	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.57	4.61	1.85	0.0	2.33	1.61	0.0	0.88	1.25
Merged-chr12-100352264-3	chr12	100351772	100352772	+	678.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 16 of 19)	intron (NM_001033213, intron 16 of 19)	75663.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	8.58	6.45	7.4	9.45	5.13	7.23	8.45	4.86	6.25
Merged-chr17-27046872-3	chr17	27046379	27047379	+	678.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10425.0	NM_080553	16440.0	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	18.88	14.75	16.65	18.89	24.72	14.47	19.01	4.42	6.25
Merged-chr7-75639660-3	chr7	75639128	75640128	+	678.077759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	184094.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	68.07	101.37	34.22	74.89	58.78	32.96	9.51	7.07	3.75
Merged-chr8-34929759-3	chr8	34929263	34930263	+	678.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 2 of 26)	MTD|LTR|ERVL-MaLR	35927.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.15	11.06	3.7	4.72	5.13	1.61	12.67	3.98	6.25
Merged-chr12-112942565-1	chr12	112942065	112943065	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025399)	promoter-TSS (NM_025399)	-423.0	NM_001316724	66174.0	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	49.2	46.08	51.8	45.88	46.18	48.23	49.64	36.7	30.6
Merged-chrX-71988250-1	chrX	71987750	71988750	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003243, intron 4 of 4)	intron (NR_003243, intron 4 of 4)	-3599.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	0.57	0.0	1.85	1.35	0.47	1.61	2.11	0.44	0.0
Merged-chr8-122983355-1	chr8	122982855	122983855	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	58929.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	37.76	34.56	11.1	99.86	96.57	45.82	10.56	7.52	10.62
Merged-chr13-30136479-1	chr13	30135979	30136979	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153546)	promoter-TSS (NM_153546)	-11.0	NM_153546	218121.0	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	6.29	2.3	0.0	0.0	1.4	3.22	2.11	2.65	0.0
Merged-chr17-28259328-1	chr17	28258828	28259828	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	MTD|LTR|ERVL-MaLR	-12380.0	NR_045427	69050.0	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	108.12	94.92	77.7	155.19	121.29	90.83	185.89	145.03	86.81
Merged-chr7-28826062-1	chr7	28825562	28826562	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016772, exon 2 of 10)	exon (NM_016772, exon 2 of 10)	724.0	NM_016772	51798.0	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	78.94	60.36	37.0	78.27	98.43	69.93	38.02	51.29	23.11
Merged-chr8-25151135-2	chr8	25150567	25151567	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8166.0	NR_106187	102467006.0		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	4.0	3.23	5.55	6.75	1.87	4.02	1.06	4.42	5.0
Merged-chr15-59027922-1	chr15	59027422	59028422	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	54104.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.29	4.15	1.85	9.45	4.2	5.63	5.28	2.65	1.25
Merged-chr18-69585408-1	chr18	69584908	69585908	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	239248.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	45.19	93.54	56.42	76.24	64.84	47.42	50.7	45.99	51.21
Merged-chr10-88385884-1	chr10	88385384	88386384	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004164, intron 1 of 20)	intron (NM_001004164, intron 1 of 20)	6472.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	6.86	5.07	1.85	2.7	3.27	3.22	5.28	2.65	1.25
Merged-chr1-86303278-1	chr1	86302778	86303778	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145222)	promoter-TSS (NM_145222)	57.0	NM_145222	227327.0	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	3.43	3.23	4.62	2.7	1.87	1.61	1.06	1.77	0.0
Merged-chr2-13272553-2	chr2	13272016	13273016	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1101.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	11.44	21.2	23.12	8.77	21.46	9.65	29.57	20.34	18.11
Merged-chr17-26781034-2	chr17	26780542	26781542	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172149)	promoter-TSS (NM_172149)	-37.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	22.31	17.05	29.6	28.34	25.66	23.31	32.74	28.74	14.36
Merged-chr10-118126910-1	chr10	118126410	118127410	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-14877.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	6.29	3.69	1.85	8.1	6.53	5.63	3.17	4.42	1.25
Merged-chr8-117406706-1	chr8	117406206	117407206	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-46317.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	11.44	7.83	9.25	12.14	10.26	16.88	3.17	7.96	8.74
Merged-chr1-184573560-1	chr1	184573060	184574060	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15869.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	18.31	12.9	1.85	9.45	7.46	9.65	9.51	10.17	6.25
Merged-chr19-45221309-1	chr19	45220809	45221809	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13927.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	1.72	2.3	0.0	2.7	2.8	0.0	6.34	0.88	6.25
Merged-chr4-150113074-1	chr4	150112574	150113574	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6270.0	NM_019741	56485.0	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	1.14	3.23	5.55	0.67	2.8	3.22	1.06	3.54	1.25
Merged-chr3-90451071-1	chr3	90450571	90451571	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008727, exon 22 of 22)	3' UTR (NM_008727, exon 22 of 22)	14795.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	14.87	7.83	0.0	19.57	20.99	24.11	8.45	8.84	6.25
Merged-chr10-25291385-1	chr10	25290885	25291885	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018747, intron 1 of 7)	intron (NM_018747, intron 1 of 7)	7778.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	5.72	13.82	16.65	21.59	12.6	24.11	3.17	5.31	3.75
Merged-chr10-7825452-1	chr10	7824952	7825952	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7018.0	NM_172785	237256.0	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	14.87	18.43	12.95	24.96	5.6	23.31	13.73	17.24	13.74
Merged-chr10-83857980-2	chr10	83857484	83858484	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep4096|DNA|hAT?	135119.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	6.86	4.61	3.7	2.02	2.8	3.22	4.22	5.31	3.75
Merged-chr6-115519461-1	chr6	115518961	115519961	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25243.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	1.14	0.46	5.55	0.67	2.8	6.43	2.11	1.33	0.0
Merged-chr18-82774544-1	chr18	82774044	82775044	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15505.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.57	1.38	1.85	3.37	3.27	8.84	2.11	0.88	1.25
Merged-chr3-146682564-1	chr3	146682064	146683064	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31247.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	5.72	7.37	0.0	7.42	9.8	3.22	1.06	2.65	7.49
Merged-chr9-40506636-1	chr9	40506136	40507136	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	MTEa|LTR|ERVL-MaLR	24747.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	9.72	5.53	11.1	6.75	5.6	7.23	1.06	3.1	3.75
Merged-chr13-107811911-1	chr13	107811411	107812411	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	78153.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	52.06	29.49	35.15	34.41	29.86	28.13	32.74	29.63	21.86
Merged-chr17-80207861-1	chr17	80207361	80208361	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_036615)	promoter-TSS (NR_036615)	-556.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	56.06	37.32	24.97	42.51	28.92	32.15	38.02	39.35	18.11
Merged-chr16-85056399-1	chr16	85055899	85056899	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001198824, exon 6 of 17)	exon (NM_001198824, exon 6 of 17)	84188.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	6.29	6.45	5.55	8.1	7.0	3.22	7.39	0.88	8.74
Merged-chr8-119046281-1	chr8	119045781	119046781	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019707, intron 6 of 13)	IAPEz-int|LTR|ERVK	-298257.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	2.86	1.84	0.0	0.0	0.0	0.0	0.0	0.88	0.0
Merged-chr1-95598837-1	chr1	95598337	95599337	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	68757.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	22.88	28.11	18.5	24.96	17.73	25.72	19.01	25.2	14.99
Merged-chr16-28518850-1	chr16	28518350	28519350	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	L1MC4a|LINE|L1	45645.0	NM_001357064	14167.0	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	4.58	5.07	1.85	9.45	6.53	1.61	1.06	3.98	6.25
Merged-chr17-36843912-1	chr17	36843412	36844412	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025599, intron 2 of 9)	intron (NM_001025599, intron 2 of 9)	6766.0	NM_001286726	22670.0	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	21.74	24.42	32.37	31.04	31.72	17.68	61.26	63.23	28.1
Merged-chr1-191151280-1	chr1	191150780	191151780	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13537.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	28.03	24.88	20.35	29.69	20.53	39.39	22.18	14.15	24.36
Merged-chr6-39006924-1	chr6	39006424	39007424	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	ORR1F|LTR|ERVL-MaLR	60662.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	73.79	56.22	39.77	72.87	39.65	53.85	54.92	75.17	50.59
Merged-chr3-108112363-1	chr3	108111863	108112863	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010306, intron 6 of 8)	intron (NM_010306, intron 6 of 8)	19297.0	NM_008141	14686.0	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	4.58	8.75	13.87	8.1	11.2	19.29	9.51	9.29	1.25
Merged-chr17-48274303-1	chr17	48273803	48274803	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 5 of 5)	intron (NM_001033922, intron 5 of 5)	10008.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	12.01	21.2	26.82	18.22	10.26	29.74	24.29	16.36	23.73
Merged-chr1-128723010-1	chr1	128722510	128723510	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-130711.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	140.73	139.62	64.75	116.05	90.5	84.4	74.99	83.57	64.95
Merged-chr11-60803809-2	chr11	60803294	60804294	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009171, intron 3 of 11)	intron (NM_009171, intron 3 of 11)	7471.0	NM_009171	20425.0	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	25.17	31.79	32.37	16.19	10.26	11.25	32.74	17.24	22.48
Merged-chr11-80352024-1	chr11	80351524	80352524	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139228, intron 8 of 8)	intron (NM_139228, intron 8 of 8)	25991.0	NM_027472	70591.0	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	0.0	1.38	0.0	3.37	2.8	1.61	0.0	0.0	3.75
Merged-chr1-162738660-1	chr1	162738160	162739160	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081290, intron 1 of 34)	intron (NM_001081290, intron 1 of 34)	1896.0	NM_001081290	226562.0	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	21.17	16.59	11.1	19.57	15.39	4.82	20.07	22.99	13.74
Merged-chr1-191170235-1	chr1	191169735	191170735	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007498)	TTS (NM_007498)	-5418.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	12.01	2.76	1.85	6.07	4.2	1.61	0.0	2.65	1.25
Merged-chr11-97548140-1	chr11	97547640	97548640	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	26986.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	9.72	3.23	5.55	6.75	0.47	1.61	5.28	1.77	6.25
Merged-chr2-119993386-2	chr2	119992880	119993880	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355293, intron 1 of 30)	MTD|LTR|ERVL-MaLR	20681.0	NM_011941	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	24.03	41.93	25.9	26.31	33.12	33.76	16.9	18.57	8.74
Merged-chr18-46423064-1	chr18	46422564	46423564	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	42752.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	14.3	4.61	19.42	9.45	7.93	7.23	15.84	18.57	23.11
Merged-chr13-37581561-1	chr13	37581061	37582061	+	678.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	236216.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	111.55	88.01	41.62	66.12	58.31	49.83	163.71	164.49	84.94
Merged-chr13-80898663-1	chr13	80898163	80899163	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12568.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	5.72	11.98	9.25	8.77	7.0	26.53	10.56	8.4	10.62
Merged-chr12-26401922-1	chr12	26401422	26402422	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 1 of 8)	intron (NM_080563, intron 1 of 8)	13088.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	7.44	5.99	1.85	4.05	5.6	1.61	5.28	5.31	3.75
Merged-chr16-17368197-1	chr16	17367697	17368697	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 7 of 54)	intron (NM_001001983, intron 7 of 54)	36826.0	NM_001331047	15160.0	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	1.72	3.23	1.85	6.07	4.2	11.25	4.22	3.54	8.12
Merged-chr4-134930267-1	chr4	134929767	134930767	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026780)	promoter-TSS (NM_026780)	-713.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	180.77	156.67	123.94	128.87	121.76	152.72	127.8	162.28	146.14
Merged-chr12-25251563-1	chr12	25251063	25252063	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	122389.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.86	4.61	3.7	6.07	5.6	3.22	6.34	8.84	2.5
Merged-chr6-122925785-1	chr6	122925285	122926285	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199311, intron 2 of 5)	intron (NM_199311, intron 2 of 5)	3937.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	15.45	22.12	30.52	11.47	13.53	17.68	27.46	16.8	15.61
Merged-chr1-77848533-1	chr1	77848033	77849033	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-333445.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.86	2.3	2.77	3.37	1.87	3.22	2.11	6.19	1.87
Merged-chr10-75551311-1	chr10	75550811	75551811	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198860, exon 4 of 4)	3' UTR (NM_198860, exon 4 of 4)	9019.0	NM_198860	192734.0	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	1.72	0.46	3.7	0.67	0.93	0.0	2.11	0.88	0.62
Merged-chr6-31080459-1	chr6	31079959	31080959	+	678.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17366.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	172.76	129.48	145.22	244.25	168.88	193.71	186.94	175.54	88.06
Merged-chr11-76525130-1	chr11	76524630	76525630	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	-15711.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	8.01	5.53	1.85	8.1	1.87	8.04	8.45	3.1	3.12
Merged-chr4-156077059-1	chr4	156076559	156077559	+	678.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17257.0	NR_132444	100415901.0	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	-	predicted gene 13648	ncRNA	13.73	9.22	10.17	8.77	7.93	12.86	9.51	5.75	7.49
Merged-chr2-18047953-2	chr2	18047456	18048456	+	677.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028317, exon 1 of 1)	exon (NM_028317, exon 1 of 1)	493.0	NM_028317	72668.0	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113|DLN-1	SKI/DACH domain containing 1	protein-coding	7.44	2.76	4.62	8.1	2.33	1.61	3.17	1.33	3.75
Merged-chr4-41388705-2	chr4	41388206	41389206	+	677.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001290454, exon 6 of 6)	exon (NM_001290454, exon 6 of 6)	36743.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	8.01	8.75	20.35	7.42	3.73	3.22	6.34	3.54	3.12
Merged-chr12-34672897-3	chr12	34672393	34673393	+	677.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-144004.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	46.91	53.45	30.52	51.28	59.71	60.28	55.98	75.61	49.34
Merged-chr1-182140537-2	chr1	182140032	182141032	+	677.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15795.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	5.72	0.92	1.85	1.35	0.0	1.61	2.11	0.88	2.5
Merged-chr17-50237528-2	chr17	50237033	50238033	+	677.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1675.0	NR_131975	446210.0	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	2.29	2.3	0.0	3.37	0.47	1.61	0.0	0.0	0.0
Merged-chr14-72595495-2	chr14	72594994	72595994	+	677.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 4 of 25)	intron (NM_207636, intron 4 of 25)	114509.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	38.9	42.85	44.4	31.71	24.26	35.37	52.81	45.99	28.73
Merged-chr1-179561270-2	chr1	179560769	179561769	+	677.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	14740.0	NM_146105	226744.0	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	4.58	5.53	12.95	4.05	5.13	3.22	7.39	2.65	7.49
Merged-chr2-22816450-2	chr2	22815954	22816954	+	677.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	42127.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	29.75	35.02	5.55	31.71	23.33	41.8	24.29	21.67	21.86
Merged-chr13-100892313-1	chr13	100891813	100892813	+	677.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58886.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	5.15	1.38	4.62	9.45	3.27	1.61	1.06	3.1	3.75
Merged-chr7-89236841-3	chr7	89236342	89237342	+	677.783325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	101945.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	32.61	43.77	36.07	58.7	54.58	37.78	48.58	41.12	29.35
Merged-chr18-25621508-2	chr18	25621020	25622020	+	677.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	58228.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.58	4.61	5.55	2.02	3.27	4.02	0.0	0.0	5.0
Merged-chr17-56930250-2	chr17	56929749	56930749	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022328, intron 1 of 11)	intron (NM_022328, intron 1 of 11)	5139.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	14.87	5.53	13.87	12.82	8.86	4.02	8.45	7.96	14.36
Merged-chr18-61466196-1	chr18	61465696	61466696	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18411.0	NR_045419	442846.0	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	9.15	8.75	12.02	8.1	4.67	17.68	11.62	3.54	13.12
Merged-chr9-21017802-2	chr9	21017302	21018302	+	677.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	B1F2|SINE|Alu	1862.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	41.19	47.0	49.02	31.04	20.99	27.33	39.08	30.51	41.84
Merged-chr14-103048511-2	chr14	103048002	103049002	+	677.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008392, intron 1 of 4)	intron (NM_008392, intron 1 of 4)	1490.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	10.87	6.91	5.55	8.1	4.2	1.61	14.79	13.27	6.25
Merged-chr4-102568745-1	chr4	102568245	102569245	+	677.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 5 of 14)	intron (NM_019840, intron 5 of 14)	-1315.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	28.03	47.46	40.7	18.89	18.19	27.33	16.9	21.22	23.11
Merged-chr6-91669481-1	chr6	91668981	91669981	+	677.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-14586.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	1.72	5.53	7.4	3.37	4.67	4.82	0.0	3.98	2.5
Merged-chr5-24652259-3	chr5	24651751	24652751	+	677.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6798.0	NR_003953	72252.0	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	2.29	1.84	0.0	4.05	0.93	0.0	2.11	0.88	0.62
Merged-chr14-73059879-2	chr14	73059412	73060412	+	677.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10798.0	NM_001162412	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	2.86	4.61	14.8	9.45	4.67	9.65	3.17	2.21	7.49
Merged-chr13-54822097-2	chr13	54821588	54822588	+	677.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32683.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	10.3	11.98	14.8	8.77	3.27	9.65	8.45	8.84	9.99
Merged-chr13-111966774-1	chr13	111966274	111967274	+	677.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98838.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	7.44	7.83	8.32	45.88	48.05	34.56	13.73	17.69	9.99
Merged-chr16-57607203-2	chr16	57606718	57607718	+	677.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025599)	promoter-TSS (NM_025599)	-351.0	NM_025599	66497.0	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	47.48	76.03	43.47	57.35	68.58	61.09	80.27	85.34	38.1
Merged-chr2-29664267-3	chr2	29663765	29664765	+	677.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	44545.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	17.73	15.67	9.25	16.19	8.86	20.9	14.79	18.13	6.25
Merged-chr2-166564668-2	chr2	166564185	166565185	+	677.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152154, exon 1 of 2)	non-coding (NR_152154, exon 1 of 2)	163.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	10.3	5.07	6.47	8.1	8.86	7.23	10.56	8.4	5.0
Merged-chr18-67289906-2	chr18	67289420	67290420	+	677.56665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053261, intron 1 of 7)	intron (NM_053261, intron 1 of 7)	697.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	13.73	14.75	13.87	18.22	6.06	14.47	26.4	23.88	8.74
Merged-chr14-70021591-2	chr14	70021068	70022068	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-55877.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	2.29	1.38	1.85	2.7	0.47	1.61	2.11	0.44	1.25
Merged-chr1-66232191-1	chr1	66231691	66232691	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001039934, intron 2 of 14)	ORR1B2|LTR|ERVL-MaLR	56862.0	NM_001039934	17756.0	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	8.01	5.99	7.4	2.7	4.2	3.22	3.17	0.88	0.62
Merged-chr7-143784222-1	chr7	143783722	143784722	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175534, exon 1 of 2)	5' UTR (NM_175534, exon 1 of 2)	278.0	NM_175534	244238.0	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	5.15	2.3	6.47	6.07	5.6	8.04	1.06	3.54	6.25
Merged-chr10-120840153-1	chr10	120839653	120840653	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177092, intron 4 of 6)	L1_Rod|LINE|L1	-17476.0	NR_038023	100504616.0	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	-	predicted gene 15910	ncRNA	6.86	5.99	14.8	2.7	5.13	4.82	4.22	1.77	3.12
Merged-chr10-42274629-2	chr10	42274189	42275189	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	2053.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	22.31	13.36	13.87	14.17	14.93	21.7	41.19	23.43	33.72
Merged-chr13-73489458-2	chr13	73488956	73489956	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145376, intron 3 of 13)	intron (NM_145376, intron 3 of 13)	22073.0	NM_145376	210992.0	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	37.18	27.65	33.3	44.53	45.72	23.31	63.37	33.6	20.61
Merged-chr10-34129159-1	chr10	34128659	34129659	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1187.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	176.76	219.33	140.59	201.07	132.49	133.43	153.15	195.0	99.3
Merged-chr14-122064725-2	chr14	122064224	122065224	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30050.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	1.72	1.84	3.7	3.37	0.47	0.8	0.0	4.42	0.0
Merged-chr6-37097590-1	chr6	37097090	37098090	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081206, exon 4 of 34)	exon (NM_001081206, exon 4 of 34)	202386.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	2.86	5.99	0.0	2.7	1.87	4.02	3.17	1.77	6.87
Merged-chr8-13213468-2	chr8	13212977	13213977	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12853.0	NM_025768	66790.0	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.0	5.53	16.65	14.84	10.73	8.04	8.45	6.63	3.75
Merged-chr5-98330493-1	chr5	98329993	98330993	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 1 of 5)	intron (NM_001024614, intron 1 of 5)	1189.0	NM_001024614	75784.0	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	2.86	1.84	0.0	2.7	3.27	1.61	3.17	1.77	3.75
Merged-chr9-103366779-2	chr9	103366266	103367266	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001134426)	promoter-TSS (NM_001134426)	-986.0	NM_175565	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	33.75	37.32	41.62	43.86	41.99	60.28	50.7	80.92	40.59
Merged-chr2-60209306-3	chr2	60208825	60209825	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020575)	promoter-TSS (NM_020575)	-611.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	85.24	113.81	57.35	97.16	92.37	81.18	59.15	93.3	60.58
Merged-chr2-35200289-2	chr2	35199780	35200780	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026697, intron 1 of 7)	CpG	840.0	NM_026697	68365.0	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	150.45	134.09	172.97	169.35	118.49	147.09	166.88	139.28	113.04
Merged-chr8-115635500-1	chr8	115635000	115636000	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71394.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	20.02	17.97	15.72	22.27	12.6	24.11	12.67	7.96	9.37
Merged-chr2-34371290-1	chr2	34370790	34371790	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290576, intron 1 of 7)	CpG	755.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.72	8.75	14.8	14.17	11.66	12.06	19.01	12.82	4.37
Merged-chr13-81129003-1	chr13	81128503	81129503	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	L1MA6|LINE|L1	164929.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.3	8.29	11.1	8.77	16.33	14.47	13.73	5.75	8.74
Merged-chr4-134160241-1	chr4	134159741	134160741	+	677.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144527, intron 3 of 13)	RLTR4_MM-int|LTR|ERV1	26844.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.0	0.92	0.0	0.67	2.8	0.0	44.36	50.85	11.24
Merged-chr17-81518855-2	chr17	81518370	81519370	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	219517.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	26.89	28.11	19.42	26.99	24.26	31.35	21.12	26.53	18.11
Merged-chr13-12459933-2	chr13	12459427	12460427	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291055)	promoter-TSS (NM_001291055)	-611.0	NM_001291055	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	33.75	37.32	22.2	56.68	33.12	32.15	47.53	41.56	27.48
Merged-chr12-80758456-1	chr12	80757956	80758956	+	677.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001008423, exon 2 of 2)	exon (NM_001008423, exon 2 of 2)	2259.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	1.72	1.38	0.0	4.05	2.8	0.0	1.06	0.44	0.0
Merged-chr17-87106039-2	chr17	87105556	87106556	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1623.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	60.64	70.04	69.37	40.48	52.25	65.11	57.03	54.83	34.97
Merged-chr11-67965577-3	chr11	67965037	67966037	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361351)	promoter-TSS (NM_001361351)	105.0	NM_027963	71860.0	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	6.86	15.21	12.02	6.07	8.86	1.61	15.84	11.94	11.24
Merged-chr16-59491825-2	chr16	59491323	59492323	+	677.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025910, exon 10 of 10)	exon (NM_025910, exon 10 of 10)	20048.0	NM_025910	67014.0	Mm.289150	NM_025910	ENSMUSG00000022724	Riox2	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204|Mina	ribosomal oxygenase 2	protein-coding	3.43	2.3	1.85	2.7	7.0	4.82	0.0	3.98	1.25
Merged-chr1-186123894-2	chr1	186123406	186124406	+	677.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-6596.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.57	3.23	0.0	6.75	0.0	1.61	5.28	2.21	2.5
Merged-chr5-137718169-3	chr5	137717660	137718660	+	677.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21642.0	NM_175521	243300.0	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	6.29	3.23	3.7	5.4	0.47	4.82	5.28	1.77	1.87
Merged-chr9-96350214-3	chr9	96349745	96350745	+	677.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357213, intron 1 of 7)	intron (NM_001357213, intron 1 of 7)	13470.0	NM_001357213	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	10.3	8.75	5.55	12.14	6.53	9.65	8.45	7.07	9.99
Merged-chr7-110221273-2	chr7	110220773	110221773	+	677.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009302)	promoter-TSS (NM_009302)	-430.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	45.76	55.75	48.1	60.05	50.38	79.58	60.2	76.49	51.84
Merged-chr13-94976986-3	chr13	94976497	94977497	+	677.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	653.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	208.23	182.93	156.32	211.19	174.94	129.41	245.04	213.12	67.45
Merged-chr1-155140270-2	chr1	155139785	155140785	+	677.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008209, intron 1 of 5)	intron (NM_008209, intron 1 of 5)	6529.0	NM_001355063	15064.0	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	8.01	8.29	1.85	6.75	4.2	4.82	7.39	5.75	0.0
Merged-chr4-129016411-2	chr4	129015903	129016903	+	677.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23179.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	1.72	3.23	1.85	4.05	4.67	7.23	2.11	3.1	1.25
Merged-chr6-83156440-3	chr6	83155941	83156941	+	677.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023790)	promoter-TSS (NM_023790)	37.0	NM_027948	71837.0	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	3.43	6.45	1.85	10.12	7.0	1.61	6.34	2.65	5.0
Merged-chr18-9451115-1	chr18	9450615	9451615	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-961.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	6.86	15.21	17.57	20.92	34.52	14.47	19.01	24.32	9.99
Merged-chr8-86873657-1	chr8	86873157	86874157	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 1 of 6)	intron (NM_030563, intron 1 of 6)	11601.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	58.35	54.37	43.47	49.93	38.25	66.71	35.91	46.43	26.23
Merged-chr17-57077871-1	chr17	57077371	57078371	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153551, intron 1 of 23)	intron (NM_153551, intron 1 of 23)	639.0	NM_153551	70785.0	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	150.45	123.03	82.32	111.33	110.1	89.22	118.29	135.75	88.68
Merged-chr7-48962109-1	chr7	48961609	48962609	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 1 of 38)	intron (NM_001111016, intron 1 of 38)	3036.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	2.86	5.53	5.55	0.0	5.13	0.0	4.22	0.88	5.62
Merged-chr19-32881742-1	chr19	32881242	32882242	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	124165.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	17.73	6.45	1.85	14.84	10.26	16.08	16.9	6.19	12.49
Merged-chr3-144603753-1	chr3	144603253	144604253	+	677.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33326.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	7.44	6.91	7.4	6.07	4.67	9.65	6.34	5.75	4.37
Merged-chr13-102094350-3	chr13	102093870	102094870	+	677.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-326153.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	3.43	6.45	7.4	4.05	5.13	4.82	5.28	2.21	1.25
Merged-chr14-66279478-4	chr14	66278980	66279980	+	677.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	1572.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	53.2	31.79	50.87	33.06	20.06	23.31	41.19	38.03	26.85
Merged-chr17-34165272-2	chr17	34164767	34165767	+	677.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	12076.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	18.88	21.66	38.85	12.14	8.86	13.66	28.52	19.46	17.49
Merged-chr5-38580972-2	chr5	38580450	38581450	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19355.0	NM_011715	22388.0	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.0	1.84	4.62	2.02	0.47	0.0	2.11	1.33	0.0
Merged-chr12-8928904-2	chr12	8928400	8929400	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7593.0	NM_008640	17775.0	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	38.9	46.54	37.0	54.65	32.19	45.82	62.31	57.48	51.21
Merged-chr13-59818507-2	chr13	59818021	59819021	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	4626.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	17.16	23.04	14.8	22.94	8.4	22.51	10.56	11.5	16.24
Merged-chr9-46106414-2	chr9	46105855	46106855	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	93535.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	20.02	18.89	11.1	14.17	13.53	4.82	31.69	19.9	19.98
Merged-chr5-108031993-2	chr5	108031493	108032493	+	677.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-33681.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	9.15	6.91	5.55	16.19	15.39	18.49	33.8	25.2	4.37
Merged-chr13-58068709-2	chr13	58068187	58069187	+	677.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 6 of 16)	intron (NM_001195075, intron 6 of 16)	33741.0	NM_001195075	100503085.0	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	13.16	8.29	5.55	22.27	17.26	20.9	14.79	9.29	11.87
Merged-chrX-56822432-2	chrX	56821945	56822945	+	677.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177293)	promoter-TSS (NM_177293)	-120.0	NM_177293	320923.0	Mm.186745	NM_177293	ENSMUSG00000067878	Map7d3	4933424A10Rik|Mtap7d3	MAP7 domain containing 3	protein-coding	5.15	2.3	9.25	2.7	2.33	4.02	1.06	3.54	5.62
Merged-chr8-37049541-2	chr8	37049034	37050034	+	677.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	-25296.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	5.15	3.69	1.85	2.7	3.27	3.22	2.11	0.44	5.0
Merged-chr17-84935797-2	chr17	84935300	84936300	+	677.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20941.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	1.72	3.23	0.0	2.7	5.6	11.25	4.22	4.86	9.99
Merged-chr10-80446411-3	chr10	80445896	80446896	+	677.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12743.0	NM_001164148	21423.0	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	4.58	0.0	3.7	8.1	5.13	4.82	6.34	0.0	0.0
Merged-chr7-96914253-3	chr7	96913753	96914753	+	677.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37274.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	1.72	3.69	1.85	2.02	1.4	0.0	7.39	2.65	1.25
Merged-chr7-102042418-2	chr7	102041901	102042901	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029211, intron 2 of 8)	MIR|SINE|MIR	22764.0	NM_029211	75212.0	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	14.87	8.29	5.55	8.77	7.0	6.43	17.96	11.94	0.62
Merged-chr11-26389773-2	chr11	26389271	26390271	+	677.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277273, intron 1 of 13)	intron (NM_001277273, intron 1 of 13)	2687.0	NR_102382	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	8.58	5.07	3.7	6.75	8.4	0.0	2.11	0.88	3.75
Merged-chr10-54058546-2	chr10	54058036	54059036	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	17260.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	9.15	6.91	1.85	8.1	3.73	8.04	7.39	4.86	8.74
Merged-chr1-144406793-2	chr1	144406303	144407303	+	677.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-157699.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	1.14	3.23	0.0	7.42	1.87	0.0	2.11	1.33	0.62
Merged-chr12-8306689-2	chr12	8306180	8307180	+	677.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_013527	238057.0	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	5.72	3.23	1.85	3.37	1.4	1.61	0.0	0.88	7.49
Merged-chr3-136080181-3	chr3	136079674	136080674	+	677.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033350, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	-239905.0	NR_040540	71038.0	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	16.02	23.5	16.65	8.1	20.06	20.9	14.79	7.96	16.24
Merged-chr10-95680590-2	chr10	95680088	95681088	+	677.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-116442.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	33.75	19.35	7.4	40.48	20.99	10.45	13.73	18.13	7.49
Merged-chr17-33897291-3	chr17	33896811	33897811	+	677.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6678.0	NM_001195298	100502766.0	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	8.01	1.38	0.92	7.42	2.8	4.02	8.45	16.8	3.75
Merged-chr4-110668158-2	chr4	110667645	110668645	+	677.033325	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	intron (NM_001284190, intron 3 of 12)	270447.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	6.29	9.22	4.62	4.72	8.86	12.86	9.51	8.4	0.0
Merged-chr8-70543769-1	chr8	70543269	70544269	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	4094.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	214.52	245.14	140.59	224.01	169.34	167.19	157.37	164.04	108.04
Merged-chr9-47621903-1	chr9	47621403	47622403	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	91551.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	80.09	117.5	80.47	93.11	80.24	71.54	128.85	141.05	77.44
Merged-chr15-42520909-1	chr15	42520409	42521409	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286062, intron 2 of 8)	intron (NM_001286062, intron 2 of 8)	156068.0	NM_001286062	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	1.72	2.76	6.47	0.0	3.27	8.04	6.34	4.42	2.5
Merged-chr14-46825129-1	chr14	46824629	46825629	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2887.0	NM_022023	63985.0	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	1.72	3.23	12.02	2.02	7.93	8.84	0.0	6.19	2.5
Merged-chr9-102636733-1	chr9	102636233	102637233	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10437.0	NM_181394	69010.0	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	1.72	0.92	0.0	2.02	1.87	3.22	2.11	2.21	0.0
Merged-chr11-70605361-2	chr11	70604886	70605886	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 12 of 30)	intron (NM_016713, intron 12 of 30)	-10508.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	5.72	1.38	1.85	5.4	0.93	2.41	3.17	1.33	6.25
Merged-chr2-26928257-1	chr2	26927757	26928757	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	5254.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	11.44	5.53	10.17	7.42	8.86	11.25	11.62	5.31	6.87
Merged-chr18-38484515-1	chr18	38484015	38485015	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65608.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.43	2.3	3.7	10.12	2.33	1.61	2.11	3.1	4.37
Merged-chr4-116246132-1	chr4	116245632	116246632	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355586, intron 1 of 9)	B2_Mm1t|SINE|B2	23385.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.57	0.46	0.0	2.02	5.6	1.61	2.11	2.65	2.5
Merged-chr16-76332318-1	chr16	76331818	76332818	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358238, intron 2 of 3)	intron (NM_001358238, intron 2 of 3)	40731.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	11.44	9.22	11.1	11.47	8.4	8.04	39.08	16.36	10.62
Merged-chr3-96663783-2	chr3	96663283	96664283	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001302471, exon 30 of 30)	3' UTR (NM_001302471, exon 30 of 30)	-6348.0	NM_001356539	213121.0	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	2.86	2.76	0.0	6.75	0.47	4.82	6.34	3.1	1.87
Merged-chr18-4044702-2	chr18	4044205	4045205	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121127.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	7.44	5.07	5.55	6.07	3.27	5.63	13.73	11.5	8.74
Merged-chr17-80684074-1	chr17	80683574	80684574	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360278, intron 1 of 33)	intron (NM_001360278, intron 1 of 33)	43951.0	NM_001360278	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	9.72	4.15	3.7	4.05	8.4	4.82	2.11	3.1	2.5
Merged-chr8-24595699-1	chr8	24595199	24596199	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001293690)	promoter-TSS (NM_001293690)	-33.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.57	5.07	5.55	4.05	1.87	0.0	8.45	5.31	4.37
Merged-chr5-138755870-2	chr5	138755384	138756384	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030565, exon 1 of 10)	exon (NM_030565, exon 1 of 10)	803.0	NM_001359593	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	5.72	3.69	0.0	9.45	4.2	9.65	3.17	2.21	3.75
Merged-chr12-99975282-1	chr12	99974782	99975782	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	L1M4|LINE|L1	10783.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	34.9	43.77	35.15	66.8	41.05	39.39	44.36	61.46	33.72
Merged-chr14-78765240-1	chr14	78764740	78765740	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32511.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.29	3.69	0.0	4.05	5.6	4.82	2.11	3.1	3.75
Merged-chr11-77453837-1	chr11	77453337	77454337	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001291190, exon 14 of 14)	exon (NM_001291190, exon 14 of 14)	-10076.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.57	0.46	18.5	2.02	2.8	0.0	1.06	0.0	9.37
Merged-chr6-31214617-1	chr6	31214117	31215117	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	URR1B|DNA|hAT-Charlie	3857.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	12.59	10.6	19.42	22.27	8.4	12.06	13.73	10.17	2.5
Merged-chr5-8356568-1	chr5	8356068	8357068	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 2 of 28)	intron (NM_001007220, intron 2 of 28)	11592.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	110.41	118.42	42.55	76.24	68.58	31.35	33.8	59.25	36.85
Merged-chr8-80323382-1	chr8	80322882	80323882	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-170663.0	NM_010369	14934.0	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	9.72	8.75	5.55	4.05	7.0	3.22	7.39	6.63	12.49
Merged-chr1-136459169-2	chr1	136458691	136459691	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8657.0	NM_001287179	381293.0	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	1.14	1.38	0.0	3.37	2.33	3.22	2.11	1.33	4.37
Merged-chr5-17882081-2	chr5	17881581	17882581	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	6878.0	NM_001159558	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	2.86	7.37	1.85	2.7	6.53	8.84	2.11	8.4	1.25
Merged-chr2-72290112-1	chr2	72289612	72290612	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023057, intron 1 of 19)	intron (NM_023057, intron 1 of 19)	4411.0	NM_178084	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	10.3	4.61	7.4	6.75	1.4	3.22	6.34	1.33	12.49
Merged-chr17-7928038-2	chr17	7927539	7928539	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145968, intron 4 of 9)	intron (NM_145968, intron 4 of 9)	2039.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	9.72	10.6	4.62	5.4	6.53	6.43	9.51	16.36	14.36
Merged-chr10-59227427-1	chr10	59226927	59227927	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172939)	TTS (NM_172939)	5505.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.86	8.75	9.25	6.75	7.0	10.45	10.56	7.07	8.74
Merged-chr15-96642168-2	chr15	96641708	96642708	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_134086)	promoter-TSS (NM_134086)	135.0	NM_001166456	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	279.73	287.99	197.02	284.06	316.76	251.59	304.18	328.53	131.78
Merged-chr6-100439296-1	chr6	100438796	100439796	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-88104.0	NR_040525	73395.0	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	7.44	1.38	3.7	2.7	2.33	1.61	4.22	2.65	2.5
Merged-chr17-51294766-1	chr17	51294266	51295266	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037268, intron 3 of 4)	intron (NR_037268, intron 3 of 4)	16778.0	NR_037253	100526485.0		NR_037253	ENSMUSG00000105330	Mir669a-6	mmu-mir-669a-6	microRNA 669a-6	ncRNA	4.58	5.99	3.7	8.77	5.13	3.22	4.22	4.42	2.5
Merged-chr1-35993143-1	chr1	35992643	35993643	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75257.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	2.29	7.37	9.25	10.12	2.8	11.25	6.34	4.42	7.49
Merged-chr12-12222747-2	chr12	12222243	12223243	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39396.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	51.48	56.68	33.3	68.15	43.85	36.97	46.47	51.29	41.84
Merged-chr16-36770354-1	chr16	36769854	36770854	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021301, intron 7 of 21)	intron (NM_021301, intron 7 of 21)	14608.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	6.29	4.15	3.7	2.7	3.73	1.61	15.84	9.29	46.22
Merged-chr3-31459623-1	chr3	31459123	31460123	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-149304.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.86	1.38	1.85	6.07	2.33	3.22	1.06	2.21	1.25
Merged-chr17-32363996-1	chr17	32363496	32364496	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13419.0	NM_017476	54194.0	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	18.31	17.97	14.8	26.31	8.86	16.88	38.02	9.29	6.87
Merged-chr12-83485996-1	chr12	83485496	83486496	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_058212, intron 1 of 8)	CpG	1740.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	4.0	2.76	0.0	2.02	2.33	3.22	3.17	2.65	2.5
Merged-chr1-156491386-1	chr1	156490886	156491886	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17058.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	5.72	2.3	3.7	5.4	1.87	2.41	3.17	2.21	5.0
Merged-chr16-90223728-1	chr16	90223228	90224228	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011434, intron 2 of 4)	intron (NM_011434, intron 2 of 4)	2986.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	20.59	15.67	24.05	16.19	10.73	18.49	7.39	8.4	17.49
Merged-chr10-18997885-1	chr10	18997385	18998385	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14078.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	8.01	5.53	4.62	8.1	1.87	3.22	5.28	3.1	3.75
Merged-chr16-38714158-1	chr16	38713658	38714658	+	677.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER102b|DNA|hAT-Charlie	-1123.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.58	0.92	0.0	7.42	0.47	2.41	140.47	145.47	71.82
Merged-chr7-35093828-1	chr7	35093328	35094328	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B4|LTR|ERVL	-25465.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	4.0	4.15	7.4	8.1	6.06	7.23	1.06	4.42	2.5
Merged-chr18-82855354-1	chr18	82854854	82855854	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_125720)	promoter-TSS (NR_125720)	-543.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	179.05	218.41	130.42	143.04	149.75	114.94	141.53	212.24	107.42
Merged-chr7-80025875-1	chr7	80025375	80026375	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175433)	promoter-TSS (NM_175433)	-353.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	110.98	124.87	134.12	95.81	86.3	118.96	134.14	145.03	104.92
Merged-chr3-95053158-1	chr3	95052658	95053658	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10544.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	5.15	3.69	1.85	5.4	0.47	2.41	4.22	1.33	1.25
Merged-chr3-108086296-1	chr3	108085796	108086796	+	677.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001346665)	promoter-TSS (NM_001346665)	320.0	NM_001358018	791415.0	Mm.374791	NM_001358018	ENSMUSG00000056411	Gm12500	-	predicted gene 12500	protein-coding	80.66	80.64	79.55	138.32	103.1	143.07	153.15	156.09	79.32
Merged-chr17-84035104-1	chr17	84034604	84035604	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	36552.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	18.88	11.06	36.07	14.84	14.46	43.4	14.79	7.07	25.61
Merged-chr11-17183421-1	chr11	17182921	17183921	+	677.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024459, intron 2 of 5)	ORR1C1|LTR|ERVL-MaLR	24123.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	25.74	17.05	39.77	22.27	17.73	16.08	12.67	4.86	13.12
Merged-chr6-17589858-3	chr6	17589322	17590322	+	676.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47188.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	9.72	11.06	0.0	8.77	8.86	2.41	29.57	23.88	17.49
Merged-chr9-90380256-2	chr9	90379751	90380751	+	676.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-109482.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	4.58	7.83	1.85	8.77	3.73	0.0	6.34	8.84	5.0
Merged-chr13-111870578-2	chr13	111870063	111871063	+	676.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130345, intron 2 of 2)	intron (NR_130345, intron 2 of 2)	2627.0	NR_130345	102636620.0	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	-	predicted gene 15326	ncRNA	5.15	3.23	2.77	4.05	6.06	3.22	6.34	2.65	5.0
Merged-chr11-120624488-2	chr11	120623986	120624986	+	676.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_105901)	TTS (NR_105901)	390.0	NR_105901	102465565.0		NR_105901	ENSMUSG00000098282	Mir6936	Gm27574|mmu-mir-6936	microRNA 6936	ncRNA	32.04	18.43	56.42	34.41	19.59	52.25	28.52	26.09	46.84
Merged-chr7-45922441-2	chr7	45921911	45922911	+	676.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010129)	promoter-TSS (NM_010129)	-985.0	NM_010129	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	58.35	72.34	89.72	49.93	40.12	94.04	72.88	61.9	50.59
Merged-chr10-43994770-3	chr10	43994276	43995276	+	676.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172393, intron 2 of 19)	intron (NM_172393, intron 2 of 19)	10070.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	21.17	21.66	17.57	18.22	13.53	12.86	27.46	18.57	18.74
Merged-chr1-157517602-1	chr1	157517102	157518102	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033354, intron 2 of 27)	B3A|SINE|B2	-5879.0	NR_151610	102632813.0	Mm.420137	NR_151610		Gm15486	-	predicted gene 15486	ncRNA	9.15	13.36	11.1	4.72	5.13	8.84	6.34	4.86	3.75
Merged-chr11-120346676-3	chr11	120346205	120347205	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105900)	TTS (NR_105900)	708.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	29.75	23.5	25.9	14.17	16.79	22.51	26.4	26.97	17.49
Merged-chr11-29375915-1	chr11	29375415	29376415	+	676.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176841, intron 2 of 31)	MTD|LTR|ERVL-MaLR	1743.0	NM_176841	108686.0	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	9.15	16.13	14.8	10.12	9.8	5.63	13.73	3.1	5.0
Merged-chr2-154570685-3	chr2	154570189	154571189	+	676.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007891)	promoter-TSS (NM_007891)	-797.0	NM_007891	13555.0	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|Tg(Wnt1-cre)2Sor|mKIAA4009	E2F transcription factor 1	protein-coding	29.75	17.51	15.72	16.19	11.2	14.47	17.96	9.73	11.24
Merged-chr14-75191299-2	chr14	75190861	75191861	+	676.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	intron (NM_008879, intron 2 of 16)	-50926.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	32.61	44.24	41.62	39.81	25.66	49.03	30.63	36.7	30.6
Merged-chr5-121815286-2	chr5	121814791	121815791	+	676.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008507)	TTS (NM_008507)	3982.0	NR_105998	102465624.0		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	14.87	11.06	11.1	6.75	11.66	20.9	6.34	4.42	11.24
Merged-chr5-99460202-3	chr5	99459710	99460710	+	676.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-207283.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	18.88	21.66	12.02	20.24	23.79	19.29	12.67	20.78	19.36
Merged-chr2-152692073-3	chr2	152691577	152692577	+	676.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	4929.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	20.02	6.91	20.35	14.84	9.8	16.88	17.96	10.17	14.99
Merged-chr8-105218152-1	chr8	105217652	105218652	+	676.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001161457)	TTS (NM_001161457)	-7036.0	NM_145604	234678.0	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	5.72	5.07	7.4	6.75	6.53	3.22	5.28	3.1	3.75
Merged-chr5-129501861-3	chr5	129501356	129502356	+	676.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359952, intron 1 of 17)	CpG	625.0	NM_172276	231769.0	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor SWAP	protein-coding	81.23	102.75	96.2	53.98	84.9	74.75	110.9	66.77	61.83
Merged-chr2-154943284-1	chr2	154942784	154943784	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50378.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	5.15	4.15	0.0	8.77	6.06	18.49	5.28	1.77	3.75
Merged-chr14-47250037-1	chr14	47249537	47250537	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360532, intron 17 of 24)	intron (NM_001360532, intron 17 of 24)	26820.0	NM_001360532	218973.0	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	2.29	2.76	12.02	6.75	3.73	0.0	4.22	1.77	0.0
Merged-chr11-52374515-1	chr11	52374015	52375015	+	676.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011694, intron 2 of 8)	intron (NM_011694, intron 2 of 8)	13653.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	2.86	1.84	11.1	2.7	2.33	4.82	4.22	0.44	0.0
Merged-chr1-157443808-1	chr1	157443308	157444308	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14760.0	NM_001356418	226527.0	Mm.215960	NM_001033284	ENSMUSG00000033488	Cryzl2	-	crystallin zeta like 2	protein-coding	13.16	17.97	18.5	60.05	51.32	46.62	15.84	18.13	8.74
Merged-chr3-81110915-2	chr3	81110415	81111415	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	74499.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	28.03	30.87	24.05	23.62	22.86	17.68	30.63	27.86	16.24
Merged-chr17-47212335-2	chr17	47211837	47212837	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-17893.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	73.79	77.41	72.15	41.16	33.59	32.15	13.73	9.29	8.74
Merged-chr14-101481345-2	chr14	101480840	101481840	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081278, intron 8 of 18)	HAL1|LINE|L1	127851.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	1.72	3.23	1.85	1.35	4.2	1.61	4.22	0.88	5.0
Merged-chr9-106373135-2	chr9	106372642	106373642	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153459, intron 2 of 2)	intron (NM_153459, intron 2 of 2)	4510.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	9.72	6.45	12.02	4.72	8.86	16.08	8.45	21.22	14.36
Merged-chr9-35063243-2	chr9	35062739	35063739	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	MYSERV6-int|LTR|ERVK	-53489.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	23.45	34.56	15.72	20.24	23.79	24.11	25.35	11.94	25.61
Merged-chr10-81294630-2	chr10	81294132	81295132	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	intron (NM_001293647, intron 1 of 17)	1669.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	19.45	15.21	10.17	18.22	9.8	12.86	11.62	11.05	8.74
Merged-chr17-32275565-1	chr17	32275065	32276065	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286630, intron 1 of 19)	intron (NM_001286630, intron 1 of 19)	8558.0	NM_198094	57261.0	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	12.01	8.75	7.4	8.1	13.06	11.25	19.01	10.61	5.62
Merged-chr6-58770935-1	chr6	58770435	58771435	+	676.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60530.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	3.43	3.69	0.0	5.4	3.27	1.61	3.17	1.33	2.5
Merged-chr6-89336430-2	chr6	89335933	89336933	+	676.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008881, intron 10 of 31)	intron (NM_008881, intron 10 of 31)	26180.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	8.58	5.53	10.17	4.72	4.67	8.84	5.28	2.21	6.25
Merged-chr4-137722892-1	chr4	137722392	137723392	+	676.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081155, intron 18 of 24)	intron (NM_001081155, intron 18 of 24)	-1569.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	4.0	0.92	0.0	5.4	3.27	4.82	3.17	3.54	1.25
Merged-chr4-88726803-3	chr4	88726310	88727310	+	676.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-4302.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	30.32	42.39	49.95	24.96	18.19	28.13	36.97	22.55	35.6
Merged-chr4-148102358-3	chr4	148101945	148102945	+	676.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027426, exon 7 of 7)	3' UTR (NM_027426, exon 7 of 7)	-14381.0	NM_001301281	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	4.58	5.99	9.25	7.42	6.06	6.43	13.73	1.77	9.99
Merged-chr1-92697062-3	chr1	92696552	92697552	+	676.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48211.0	NM_153114	260301.0	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	1.72	4.15	11.1	4.72	0.93	3.22	2.11	0.88	0.0
Merged-chr10-122782302-2	chr10	122781796	122782796	+	676.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176919, exon 2 of 9)	exon (NM_176919, exon 2 of 9)	102981.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	17.16	11.52	27.75	11.47	11.66	17.68	40.14	34.93	16.86
Merged-chr18-36242273-2	chr18	36241773	36242773	+	676.400024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38889.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	9.15	9.22	9.25	17.54	12.13	10.45	19.01	14.59	12.49
Merged-chr16-51888599-2	chr16	51888097	51889097	+	676.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98690.0	NR_153657	629091.0	Mm.364775	NR_153657		Gm29686	-	predicted gene, 29686	ncRNA	7.44	4.61	7.4	6.07	2.8	3.22	3.17	4.42	5.62
Merged-chr14-118941227-3	chr14	118940676	118941676	+	676.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	3244.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	14.3	16.59	16.65	20.92	18.66	20.09	25.35	23.43	9.99
Merged-chr13-28573553-3	chr13	28573048	28574048	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	137325.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	7.44	5.99	2.77	4.72	7.0	12.86	5.28	4.86	0.0
Merged-chrX-77512367-3	chrX	77511877	77512877	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	1150.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	38.9	35.48	16.65	33.74	18.19	32.15	41.19	30.07	11.87
Merged-chr11-121078121-3	chr11	121077746	121078746	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145373, intron 1 of 5)	RLTR15|LTR|ERVK	2893.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	45.19	52.53	42.55	48.58	28.46	53.85	39.08	40.68	52.46
Merged-chr8-25103137-3	chr8	25102627	25103627	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155282, intron 1 of 1)	CpG	948.0	NR_155282	74744.0	Mm.117802	NR_155282		5830408C22Rik	2700026D01Rik	RIKEN cDNA 5830408C22 gene	ncRNA	37.18	50.23	51.8	39.81	41.05	34.56	71.82	49.08	29.35
Merged-chr5-140411565-1	chr5	140411065	140412065	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7740.0	NM_133916	27979.0	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	8.01	2.3	1.85	4.05	1.4	0.0	0.0	2.21	6.25
Merged-chr5-134491922-1	chr5	134491422	134492422	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009990, exon 16 of 17)	exon (NM_009990, exon 16 of 17)	-35206.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	2.86	1.84	1.85	3.37	1.87	8.04	5.28	3.54	7.49
Merged-chr16-84605557-1	chr16	84605057	84606057	+	676.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2B2|LTR|ERVL	-74232.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	7.44	5.53	0.0	4.05	2.8	2.41	6.34	4.42	1.25
Merged-chr2-12228501-3	chr2	12228020	12229020	+	676.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001309, intron 13 of 29)	intron (NM_001001309, intron 13 of 29)	-72726.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	4.0	7.83	5.55	6.07	5.13	6.43	6.34	4.42	8.74
Merged-chr7-16880892-1	chr7	16880392	16881392	+	676.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081655, intron 1 of 3)	intron (NM_001081655, intron 1 of 3)	5575.0	NM_001081655	629378.0	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	8.01	6.91	3.7	8.1	3.27	7.23	8.45	4.42	7.49
Merged-chr14-64809938-3	chr14	64809430	64810430	+	676.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	139927.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	1.14	8.75	17.57	6.75	4.2	8.04	6.34	2.65	3.75
Merged-chr17-50571216-3	chr17	50570719	50571719	+	676.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	MTD|LTR|ERVL-MaLR	61672.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	25.17	39.63	36.07	29.01	24.72	24.92	46.47	49.08	26.23
Merged-chr16-91365951-2	chr16	91365447	91366447	+	676.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6836.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	30.89	17.51	17.57	42.51	26.59	27.33	14.79	15.92	2.5
Merged-chr14-74917892-3	chr14	74917338	74918338	+	676.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	30039.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	47.48	53.45	46.25	24.96	27.52	28.13	58.09	52.18	43.72
Merged-chr7-121981016-2	chr7	121980525	121981525	+	676.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033318, intron 1 of 16)	intron (NM_001033318, intron 1 of 16)	668.0	NM_001033318	233824.0	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	29.17	24.42	17.57	32.39	27.99	21.7	28.52	15.48	9.99
Merged-chr12-105967208-2	chr12	105966719	105967719	+	676.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43044.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	4.0	3.69	1.85	1.35	2.8	1.61	3.17	0.88	1.25
Merged-chr14-8108361-2	chr14	8107862	8108862	+	676.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	intron (NM_001360314, intron 1 of 19)	10151.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	11.44	14.75	27.75	16.19	15.86	28.13	26.4	13.71	11.87
Merged-chr8-75094942-3	chr8	75094512	75095512	+	676.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 1 of 4)	ID4_|SINE|ID	1394.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	40.04	39.17	40.7	43.86	42.92	44.21	43.3	47.31	24.98
Merged-chr6-143361517-3	chr6	143361002	143362002	+	676.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115614.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	1.14	7.37	1.85	6.07	7.0	5.63	7.39	3.54	5.62
Merged-chr8-44938156-2	chr8	44937662	44938662	+	676.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-12046.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	4.58	0.92	2.77	1.35	0.93	0.0	4.22	1.33	3.75
Merged-chr2-29406140-3	chr2	29405639	29406639	+	676.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290490, intron 3 of 5)	RMER4A|LTR|ERVK	27625.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	9.15	7.37	11.1	14.17	10.73	1.61	4.22	4.86	8.12
Merged-chr15-91290707-1	chr15	91290207	91291207	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033633, intron 7 of 9)	intron (NM_001033633, intron 7 of 9)	-98700.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.86	1.38	5.55	5.4	0.93	4.82	2.11	2.65	1.87
Merged-chr18-20745098-1	chr18	20744598	20745598	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	1306.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	84.09	72.34	70.3	89.06	109.16	87.61	152.09	134.86	84.31
Merged-chr12-35266874-1	chr12	35266374	35267374	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71977.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	34.9	23.96	11.1	36.43	35.45	61.09	5.28	3.1	3.75
Merged-chr1-144294158-1	chr1	144293658	144294658	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45054.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	8.01	5.07	5.55	4.05	2.8	11.25	4.22	6.63	5.62
Merged-chr4-59467307-1	chr4	59466807	59467807	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28674.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	18.88	30.41	33.3	19.57	17.26	20.9	23.24	19.9	13.74
Merged-chr8-108580646-1	chr8	108580146	108581146	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	intron (NR_077224, intron 1 of 1)	4031.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	8.58	6.91	14.8	7.42	2.8	7.23	7.39	3.54	9.37
Merged-chr11-46252249-1	chr11	46251749	46252749	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252459, intron 19 of 30)	intron (NM_001252459, intron 19 of 30)	16692.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	6.86	2.3	1.85	4.72	3.27	1.61	4.22	0.44	2.5
Merged-chr3-104901641-2	chr3	104901143	104902143	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253702, intron 11 of 13)	intron (NM_001253702, intron 11 of 13)	37137.0	NM_001253702	229681.0	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	8.01	11.98	7.4	12.82	15.39	20.9	11.62	9.73	11.87
Merged-chr12-79545240-1	chr12	79544740	79545740	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	247889.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	5.15	2.3	0.0	14.17	7.0	1.61	1.06	2.65	3.75
Merged-chr13-17795335-1	chr13	17794835	17795835	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	intron (NM_027118, intron 1 of 13)	9762.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	11.44	6.45	7.4	8.1	5.13	4.82	7.39	11.5	7.49
Merged-chr18-89149316-2	chr18	89148815	89149815	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48112.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	14.3	7.37	11.1	10.8	3.27	12.06	10.56	7.52	8.74
Merged-chr10-80873052-1	chr10	80872552	80873552	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6764.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	1.72	0.92	0.92	4.05	0.0	4.82	2.11	1.33	2.5
Merged-chr15-100449969-1	chr15	100449469	100450469	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19042.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	42.9	35.94	53.65	36.43	34.06	46.62	59.15	68.09	36.85
Merged-chr6-83142649-1	chr6	83142149	83143149	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355525, intron 1 of 11)	intron (NM_001355525, intron 1 of 11)	543.0	NM_001355525	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	5.72	4.15	3.7	4.05	2.8	6.43	3.17	0.0	2.5
Merged-chr7-16264658-2	chr7	16264154	16265154	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ZP3AR|Satellite|Satellite	-5114.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	5.15	7.37	3.7	11.47	6.06	12.86	10.56	11.94	7.49
Merged-chr2-61656588-1	chr2	61656088	61657088	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-55106.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	6.29	1.84	5.55	7.42	0.93	0.0	1.06	0.88	4.37
Merged-chr2-168954712-2	chr2	168954204	168955204	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009564, intron 1 of 5)	intron (NM_009564, intron 1 of 5)	883.0	NM_009564	22722.0	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	40.04	39.17	27.75	48.58	54.11	53.85	55.98	40.24	26.23
Merged-chr14-52338835-1	chr14	52338335	52339335	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10165.0	NM_015772	50524.0	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	spalt like transcription factor 2	protein-coding	3.43	3.69	2.77	5.4	5.13	0.0	4.22	3.98	1.25
Merged-chr5-43924091-1	chr5	43923591	43924591	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55282.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.72	0.46	5.55	4.72	1.87	4.02	0.0	3.54	5.0
Merged-chr1-43338068-1	chr1	43337568	43338568	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107683.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	25.17	21.66	20.35	29.69	25.66	19.29	32.74	29.63	18.74
Merged-chr16-89909621-1	chr16	89909121	89910121	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 2 of 27)	intron (NM_009384, intron 2 of 27)	51206.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	2.86	4.61	0.0	1.35	2.8	1.61	2.11	1.77	1.25
Merged-chr12-8519136-1	chr12	8518636	8519636	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19127.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	152.17	187.08	143.37	172.05	217.39	197.73	182.72	225.51	99.92
Merged-chr11-78807582-1	chr11	78807082	78808082	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-19013.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	6.86	2.76	0.0	9.45	3.73	3.22	6.34	1.77	0.0
Merged-chr15-81123739-1	chr15	81123239	81124239	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	-18692.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	33.75	36.86	33.3	41.83	27.06	52.25	32.74	25.65	27.48
Merged-chr2-21016788-2	chr2	21016304	21017304	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47930.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	6.29	2.3	2.77	18.22	9.33	5.63	5.28	9.73	8.74
Merged-chr10-92841209-1	chr10	92840709	92841709	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347060, intron 61 of 67)	intron (NM_001347060, intron 61 of 67)	-118791.0	NM_008682	17997.0	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	1.14	0.46	0.0	4.72	2.8	0.0	1.06	1.77	1.25
Merged-chr5-99246136-1	chr5	99245636	99246636	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	6791.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	98.39	96.3	94.35	102.56	88.17	95.65	105.62	102.58	61.83
Merged-chr8-26981309-1	chr8	26980809	26981809	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3973.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	60.64	68.66	50.87	74.89	62.98	61.89	76.05	68.54	74.32
Merged-chr6-143135102-1	chr6	143134602	143135602	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153819, intron 5 of 8)	intron (NR_153819, intron 5 of 8)	18829.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	1.72	3.69	1.85	3.37	2.33	1.61	1.06	4.42	3.12
Merged-chr4-102573302-1	chr4	102572802	102573802	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	3242.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	132.14	170.95	132.27	101.21	90.97	97.26	126.74	165.81	106.17
Merged-chr4-154934142-1	chr4	154933642	154934642	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6065.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	59.49	68.66	50.87	49.93	32.19	42.6	99.28	87.55	76.82
Merged-chr9-63794293-1	chr9	63793793	63794793	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36299.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.0	2.3	1.85	14.84	4.2	10.45	5.28	7.07	0.0
Merged-chr10-45051304-3	chr10	45050800	45051800	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15914.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.29	3.23	0.0	6.75	4.2	3.22	6.34	0.44	2.5
Merged-chr14-44990683-2	chr14	44990180	44991180	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	2569.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	18.88	33.64	7.4	12.82	7.93	19.29	21.12	22.11	13.12
Merged-chr1-65176489-1	chr1	65175989	65176989	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111320, intron 1 of 8)	RMER15|LTR|ERVL	2653.0	NM_010497	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	28.03	46.54	14.8	80.29	104.96	65.91	82.38	60.13	48.09
Merged-chr19-55935438-1	chr19	55934938	55935938	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40117.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	12.01	1.38	10.17	2.02	1.4	1.61	5.28	0.0	2.5
Merged-chr8-70760374-1	chr8	70759874	70760874	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183170, exon 2 of 5)	exon (NM_183170, exon 2 of 5)	547.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	62.93	38.25	55.5	72.87	60.65	61.89	82.38	62.35	26.23
Merged-chr1-152620066-1	chr1	152619566	152620566	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	5151.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	42.33	34.56	25.9	45.21	43.85	38.58	41.19	23.43	27.48
Merged-chr10-44005403-1	chr10	44004903	44005903	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172393)	promoter-TSS (NM_172393)	-557.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	8.58	9.22	5.55	12.14	9.8	4.82	5.28	2.65	2.5
Merged-chr6-54794590-1	chr6	54794090	54795090	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-22326.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.15	6.91	5.55	2.7	1.87	1.61	1.06	3.54	3.12
Merged-chr12-33389017-2	chr12	33388522	33389522	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131031, intron 1 of 3)	intron (NR_131031, intron 1 of 3)	5738.0	NR_131031	75836.0	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	5.72	2.76	0.0	8.1	2.8	0.0	2.11	3.1	1.25
Merged-chr1-39911615-1	chr1	39911115	39912115	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	intron (NM_001252202, intron 2 of 29)	10702.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.0	3.69	1.85	2.7	4.67	1.61	2.11	3.98	0.62
Merged-chr5-129670114-2	chr5	129669629	129670629	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-41.0	NM_172462	22648.0	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	8.01	5.53	5.55	14.17	9.8	16.08	8.45	3.98	8.74
Merged-chr1-134244349-1	chr1	134243849	134244849	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8892.0	NM_001008533	11539.0	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	3.43	1.84	1.85	1.35	1.87	4.82	3.17	1.77	0.0
Merged-chr3-142589089-1	chr3	142588589	142589589	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5758.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	22.88	21.66	37.92	7.42	10.73	13.66	34.85	24.76	21.86
Merged-chr8-71709961-1	chr8	71709461	71710461	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028267, intron 24 of 26)	intron (NR_028267, intron 24 of 26)	-8161.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	1.72	1.84	0.0	2.02	0.93	3.22	4.22	2.21	3.75
Merged-chr2-70945091-1	chr2	70944591	70945591	+	676.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	73283.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	2.86	3.69	5.55	11.47	10.73	4.82	22.18	25.65	19.98
Merged-chr16-88478616-1	chr16	88478116	88479116	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28362.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	4.58	7.83	3.7	8.1	5.6	1.61	9.51	6.19	6.25
Merged-chr13-52577329-1	chr13	52576829	52577829	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4104.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	142.44	152.06	129.49	132.92	104.03	127.8	125.69	94.18	67.45
Merged-chr6-124508539-3	chr6	124508018	124509018	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_181344, exon 6 of 6)	exon (NM_181344, exon 6 of 6)	-4103.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	11.44	17.51	19.42	12.14	15.86	15.27	11.62	11.5	17.49
Merged-chr16-33883251-2	chr16	33882755	33883755	+	676.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 4 of 14)	intron (NM_001145884, intron 4 of 14)	53590.0	NM_001145884	16419.0	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	25.17	6.45	4.62	12.82	6.06	14.47	23.24	10.61	12.49
Merged-chr6-5097253-1	chr6	5096753	5097753	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	96693.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	10.3	4.15	7.4	1.35	4.2	11.25	2.11	5.75	2.5
Merged-chr6-31087108-1	chr6	31086608	31087608	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24015.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	24.03	9.68	13.87	26.99	15.86	8.84	15.84	19.46	19.36
Merged-chr1-83746231-1	chr1	83745731	83746731	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-338031.0	NM_001356547	77629.0	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	4.58	4.15	6.47	4.05	4.2	3.22	2.11	7.96	3.75
Merged-chr17-35209574-2	chr17	35209085	35210085	+	676.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4234.0	NM_010735	16992.0	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	233.97	167.73	142.44	168.68	110.1	120.57	167.93	238.33	98.05
Merged-chrX-136708199-5	chrX	136707716	136708716	+	675.983337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356367, intron 1 of 1)	intron (NM_001356367, intron 1 of 1)	234.0	NM_146236	237052.0	Mm.40713	NM_146236	ENSMUSG00000049536	Tceal1	0610011M09Rik|BC011290|P21|SIIR|pp21	transcription elongation factor A (SII)-like 1	protein-coding	40.04	41.47	9.25	64.1	55.98	15.27	28.52	24.32	9.99
Merged-chr1-149943853-3	chr1	149943354	149944354	+	675.977783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 1 of 17)	Lx8|LINE|L1	17436.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	37.18	48.38	46.25	18.22	43.39	41.8	45.42	39.8	33.72
Merged-chr9-50532153-3	chr9	50531647	50532647	+	675.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133217)	TTS (NM_133217)	-3506.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	9.72	6.45	9.25	13.49	9.33	6.43	14.79	7.07	18.11
Merged-chr7-48876731-3	chr7	48876212	48877212	+	675.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013368, intron 4 of 12)	intron (NM_001013368, intron 4 of 12)	4329.0	NM_001013368	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	11.44	12.9	12.02	27.66	13.53	17.68	17.96	7.96	5.62
Merged-chr11-77604506-3	chr11	77603981	77604981	+	675.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	3334.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	29.17	15.67	14.8	22.27	19.59	16.08	30.63	23.43	17.49
Merged-chr16-58481967-2	chr16	58481456	58482456	+	675.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	41470.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	97.25	87.09	70.3	103.91	80.24	163.17	113.01	90.64	116.79
Merged-chr17-8842062-2	chr17	8841571	8842571	+	675.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011866, intron 1 of 21)	intron (NM_011866, intron 1 of 21)	-7914.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	12.59	11.52	6.47	9.45	6.53	6.43	7.39	0.88	2.5
Merged-chr15-36967300-2	chr15	36966775	36967775	+	675.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40127.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	1.72	3.23	3.7	2.7	4.2	4.02	4.22	3.1	0.0
Merged-chr16-5471221-2	chr16	5470709	5471709	+	675.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-215253.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	4.58	5.53	7.4	7.42	1.4	6.43	5.28	3.54	0.62
Merged-chr15-12323002-3	chr15	12322496	12323496	+	675.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025673, intron 1 of 3)	intron (NM_025673, intron 1 of 3)	1500.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	41.76	47.0	19.42	52.63	40.59	34.56	41.19	48.64	17.49
Merged-chr10-30789705-2	chr10	30789192	30790192	+	675.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	13634.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	12.01	9.22	1.85	14.84	14.46	14.47	14.79	5.75	16.24
Merged-chr4-102808440-3	chr4	102807942	102808942	+	675.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	MTD|LTR|ERVL-MaLR	48307.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	8.58	7.83	11.1	8.77	7.0	9.65	6.34	5.75	5.0
Merged-chr11-32217072-2	chr11	32216564	32217564	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010117, intron 1 of 17)	intron (NM_010117, intron 1 of 17)	5229.0	NM_010117	13650.0	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	4.0	1.38	3.7	4.05	3.73	0.0	6.34	0.88	0.0
Merged-chr9-35166322-2	chr9	35165824	35166824	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027030, intron 2 of 5)	intron (NM_027030, intron 2 of 5)	9663.0	NM_027030	69305.0	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	1.72	4.15	14.8	6.75	3.73	11.25	2.11	2.21	0.62
Merged-chr17-70992029-2	chr17	70991504	70992504	+	675.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1488.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	76.66	84.78	58.27	66.12	49.92	72.34	45.42	30.07	39.35
Merged-chr9-40991102-2	chr9	40990611	40991611	+	675.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019465, intron 3 of 9)	intron (NM_019465, intron 3 of 9)	13517.0	NM_019465	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	5.15	5.53	5.55	4.72	7.93	11.25	7.39	7.52	7.49
Merged-chr7-83665274-3	chr7	83664774	83665774	+	675.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 10 of 18)	intron (NM_001360088, intron 10 of 18)	-9779.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	11.44	7.37	12.95	5.4	6.06	12.06	9.51	3.1	7.49
Merged-chr15-61989345-3	chr15	61988838	61989838	+	675.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177352, intron 2 of 2)	intron (NM_001177352, intron 2 of 2)	3997.0	NM_001177352	17869.0	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	14.3	12.44	12.02	12.82	16.33	19.29	13.73	14.15	16.86
Merged-chr8-46735711-2	chr8	46735201	46736201	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045750, intron 2 of 2)	intron (NR_045750, intron 2 of 2)	3814.0	NR_045750	100503498.0	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	15.45	10.6	12.02	10.12	10.26	16.08	28.52	14.15	19.36
Merged-chr3-85601987-2	chr3	85601483	85602483	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 3 of 12)	intron (NM_144896, intron 3 of 12)	27854.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	12.01	22.58	12.95	14.84	7.46	12.06	22.18	15.48	12.49
Merged-chr17-12756050-2	chr17	12755541	12756541	+	675.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	13665.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	22.88	25.8	17.57	20.92	19.59	16.88	34.85	33.16	19.36
Merged-chr11-80508653-2	chr11	80508135	80509135	+	675.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_126552, exon 1 of 3)	non-coding (NR_126552, exon 1 of 3)	471.0	NR_126552	77417.0	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	16.02	11.98	7.4	13.49	10.73	15.27	16.9	11.94	5.0
Merged-chr4-102585678-2	chr4	102585183	102586183	+	675.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-1875.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	52.63	45.16	29.6	28.34	15.86	24.11	41.19	26.09	14.99
Merged-chr4-154907953-3	chr4	154907474	154908474	+	675.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8931.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	14.87	3.69	9.25	8.1	5.13	5.63	7.39	7.96	11.87
Merged-chr9-46028175-3	chr9	46027675	46028675	+	675.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	15355.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.15	7.83	13.87	14.17	13.53	13.66	6.34	9.29	8.74
Merged-chr3-52243842-1	chr3	52243342	52244342	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24495.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	4.58	2.76	0.0	4.05	0.93	3.22	1.06	1.33	7.49
Merged-chr15-101983748-1	chr15	101983248	101984248	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20594.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	89.24	116.58	90.65	70.17	71.38	90.02	73.93	104.79	69.95
Merged-chr5-90896201-2	chr5	90895697	90896697	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	4952.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	17.16	6.91	12.95	11.47	7.93	11.25	5.28	5.75	6.25
Merged-chr15-78996799-2	chr15	78996294	78997294	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045746, intron 2 of 2)	intron (NR_045746, intron 2 of 2)	-5429.0	NR_105921	102465577.0		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	7.44	5.53	5.55	8.77	4.2	16.88	5.28	1.33	9.37
Merged-chr12-79182072-1	chr12	79181572	79182572	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021557, intron 6 of 6)	intron (NM_021557, intron 6 of 6)	8889.0	NM_001362269	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	2.29	5.07	3.7	3.37	3.73	4.82	1.06	3.1	4.37
Merged-chr18-3009973-1	chr18	3009473	3010473	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113439.0	NM_001167539	100312476.0	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	6.29	13.82	8.32	8.77	12.6	13.66	2.11	2.65	29.98
Merged-chr15-9955192-2	chr15	9954714	9955714	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-206346.0	NM_001305044	320277.0	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	4.58	1.84	14.8	4.72	2.8	8.04	3.17	3.1	2.5
Merged-chr19-34080592-1	chr19	34080092	34081092	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027340, intron 7 of 9)	intron (NM_027340, intron 7 of 9)	13234.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	3.43	3.23	1.85	10.8	1.4	4.82	0.0	1.77	5.0
Merged-chr13-91681683-2	chr13	91681180	91682180	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-59841.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	37.18	34.56	8.32	24.29	20.06	14.47	19.01	23.88	9.99
Merged-chr8-104253203-1	chr8	104252703	104253703	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037841, intron 1 of 2)	B3A|SINE|B2	2342.0	NM_001286383	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	9.72	5.99	0.92	3.37	2.8	4.02	2.11	3.98	5.0
Merged-chr8-95333001-1	chr8	95332501	95333501	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133954, intron 1 of 6)	intron (NM_133954, intron 1 of 6)	717.0	NM_133954	101985.0	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	73.79	99.07	69.37	76.92	91.44	92.44	114.07	123.36	59.33
Merged-chr11-59515067-1	chr11	59514567	59515567	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8427.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	6.29	10.6	12.02	9.45	8.86	15.27	7.39	3.54	7.49
Merged-chr13-92576868-2	chr13	92576356	92577356	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030237)	promoter-TSS (NM_030237)	-624.0	NM_030237	79401.0	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	7.44	4.15	1.85	0.67	7.46	3.22	5.28	4.42	5.62
Merged-chr15-57905985-2	chr15	57905494	57906494	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6205.0	NM_001081396	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	90.96	74.19	65.67	89.06	65.31	79.58	77.1	91.53	53.71
Merged-chr6-54886397-1	chr6	54885897	54886897	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199143, intron 4 of 4)	intron (NM_199143, intron 4 of 4)	69481.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	8.58	5.99	7.4	6.75	9.8	11.25	8.45	12.38	4.37
Merged-chr3-97609383-2	chr3	97608868	97609868	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026539, intron 1 of 22)	B1_Mm|SINE|Alu	822.0	NM_026539	68058.0	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	21.17	42.39	36.07	44.53	40.59	31.35	44.36	46.87	16.86
Merged-chr12-38860327-1	chr12	38859827	38860827	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 10 of 11)	intron (NM_001347379, intron 10 of 11)	76616.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.58	5.07	7.4	5.4	1.87	8.84	2.11	4.42	5.62
Merged-chr8-90824445-2	chr8	90823939	90824939	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4396.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	12.01	11.98	1.85	7.42	2.33	4.82	6.34	15.03	11.87
Merged-chr18-4345500-1	chr18	4345000	4346000	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	7453.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	38.9	31.79	37.92	27.66	32.66	42.6	47.53	55.71	33.72
Merged-chr19-43993574-2	chr19	43993060	43994060	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_030703	93721.0	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	10.3	3.23	7.4	7.42	7.0	10.45	13.73	6.19	9.99
Merged-chr1-131462785-2	chr1	131462296	131463296	+	675.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	64565.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	24.6	21.2	22.2	18.89	15.39	12.06	17.96	7.52	22.48
Merged-chr7-97753532-1	chr7	97753032	97754032	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-15285.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	9.72	8.29	10.17	6.75	5.6	8.84	6.34	2.65	3.75
Merged-chr10-77967219-2	chr10	77966724	77967724	+	675.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138301, intron 2 of 33)	intron (NM_138301, intron 2 of 33)	2648.0	NM_138301	28240.0	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	44.05	50.23	39.77	32.39	36.85	32.96	97.17	66.33	40.59
Merged-chr18-77861981-3	chr18	77861504	77862504	+	675.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-65614.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	5.72	8.29	10.17	15.52	3.73	24.11	7.39	6.63	13.12
Merged-chr2-124617605-3	chr2	124617085	124618085	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	7289.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	56.63	57.6	54.57	57.35	37.32	56.27	49.64	56.16	43.72
Merged-chr1-91095553-3	chr1	91095031	91096031	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	42087.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	28.6	23.04	16.65	17.54	19.13	22.51	26.4	15.48	13.12
Merged-chr18-60915942-3	chr18	60915428	60916428	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038499, intron 1 of 1)	MIR|SINE|MIR	3688.0	NM_001038499	545260.0	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	2.86	2.3	7.4	0.67	0.47	2.41	1.06	0.88	0.0
Merged-chr11-33170679-3	chr11	33170174	33171174	+	675.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7468.0	NM_008722	18148.0	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	2.29	4.61	7.4	1.35	1.87	0.0	0.0	2.65	2.5
Merged-chr8-86807793-2	chr8	86807275	86808275	+	675.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61769.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	10.3	9.68	3.7	10.8	12.6	20.9	6.34	1.77	8.74
Merged-chr2-33643269-2	chr2	33642766	33643766	+	675.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_046275, exon 3 of 3)	non-coding (NR_046275, exon 3 of 3)	2073.0	NR_046275	100504399.0	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	2.29	0.46	0.0	1.35	0.0	9.65	2.11	3.1	6.87
Merged-chr1-85122045-1	chr1	85121545	85122545	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-12192.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	2.86	4.15	3.7	8.77	5.6	2.41	5.28	3.1	1.87
Merged-chr17-5522215-1	chr17	5521715	5522715	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	GA-rich|Low_complexity|Low_complexity	29615.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	20.02	13.82	24.05	17.54	15.39	20.09	21.12	8.84	15.61
Merged-chr11-20533403-2	chr11	20532901	20533901	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9852.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	107.55	130.4	80.47	101.88	97.97	81.99	118.29	157.41	94.93
Merged-chr9-119156450-3	chr9	119155955	119156955	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146230, intron 2 of 11)	intron (NM_146230, intron 2 of 11)	638.0	NM_146230	235674.0	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	9.72	4.61	2.77	4.72	1.87	1.61	2.11	1.33	1.87
Merged-chr18-10776507-1	chr18	10776007	10777007	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 11 of 20)	intron (NM_144860, intron 11 of 20)	6469.0	NR_029547	387151.0		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	2.29	8.29	7.4	2.02	4.2	7.23	1.06	3.54	2.5
Merged-chr7-133115055-1	chr7	133114555	133115555	+	675.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	8428.0	NM_009980	13017.0	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	17.73	12.44	20.35	12.82	21.46	14.47	16.9	19.9	14.36
Merged-chr11-87595648-2	chr11	87595152	87596152	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133215, intron 2 of 18)	CpG	3486.0	NM_133215	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	5.72	4.61	12.02	10.12	5.13	8.04	4.22	1.77	2.5
Merged-chr3-95666527-1	chr3	95666027	95667027	+	675.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	7806.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	69.22	77.41	54.57	62.75	49.92	55.46	67.6	83.57	65.58
Merged-chr11-58094493-2	chr11	58093986	58094986	+	675.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9484.0	NM_026949	69125.0	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	45.19	45.16	40.7	43.86	21.93	29.74	9.51	11.94	8.12
Merged-chr10-18996579-2	chr10	18996065	18997065	+	675.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15398.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	12.01	12.44	7.4	13.49	9.33	7.23	10.56	10.17	4.37
Merged-chr3-51360352-2	chr3	51359840	51360840	+	675.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-19696.0	NM_023502	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	8.58	6.91	1.85	7.42	1.4	3.22	6.34	3.1	6.87
Merged-chr7-44384646-3	chr7	44384159	44385159	+	675.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016663, intron 1 of 10)	intron (NM_016663, intron 1 of 10)	533.0	NM_016663	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	7.44	12.44	7.4	10.12	7.93	18.49	11.62	1.33	11.87
Merged-chr9-32138833-3	chr9	32138351	32139351	+	675.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	L2a|LINE|L2	22715.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	8.58	6.91	3.7	6.75	3.27	3.22	6.34	3.54	2.5
Merged-chr2-157373926-3	chr2	157373467	157374467	+	675.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026968, intron 1 of 2)	intron (NM_026968, intron 1 of 2)	6373.0	NM_026968	69161.0	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	21.17	15.67	25.9	24.29	19.59	16.08	16.9	15.03	9.37
Merged-chr13-113914448-3	chr13	113913978	113914978	+	675.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	119970.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	61.78	41.47	16.65	98.51	150.22	67.52	133.08	161.39	96.18
Merged-chr15-81989888-2	chr15	81989409	81990409	+	675.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9369.0	NM_025503	66346.0	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	4.0	4.15	5.55	2.7	0.47	1.61	6.34	0.44	6.25
Merged-chr9-71959711-2	chr9	71959213	71960213	+	675.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011544, intron 5 of 20)	intron (NM_011544, intron 5 of 20)	-63617.0	NM_001253863	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	20.02	7.83	3.7	12.14	9.8	4.82	8.45	3.54	0.0
Merged-chr5-115333882-3	chr5	115333372	115334372	+	675.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025573)	TTS (NM_025573)	6695.0	NR_036616	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	22.88	15.21	29.6	30.36	16.79	20.09	30.63	26.97	24.36
Merged-chr19-26635721-3	chr19	26635223	26636223	+	675.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011416, intron 4 of 32)	intron (NM_011416, intron 4 of 32)	30563.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	6.29	7.83	4.62	4.72	4.2	4.02	0.0	1.77	3.75
Merged-chr8-90841332-1	chr8	90840832	90841832	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 1 of 39)	intron (NM_177224, intron 1 of 39)	12497.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	47.48	39.17	43.47	33.06	30.32	45.01	35.91	42.01	43.09
Merged-chr3-105039073-1	chr3	105038573	105039573	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	13880.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	35.47	24.42	24.97	23.62	23.33	12.86	35.91	35.37	26.85
Merged-chr15-35293137-3	chr15	35292668	35293668	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2944.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	1.14	2.76	1.85	4.72	1.4	0.0	3.17	0.44	2.5
Merged-chr5-76244594-1	chr5	76244094	76245094	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007715, intron 11 of 22)	intron (NM_007715, intron 11 of 22)	58908.0	NM_001305222	12753.0	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	13.73	12.44	21.27	7.42	6.53	14.47	9.51	17.24	6.25
Merged-chr17-79569836-2	chr17	79569324	79570324	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45076.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	8.01	7.83	9.25	8.1	5.13	17.68	10.56	7.96	12.49
Merged-chr9-55250589-2	chr9	55250094	55251094	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	intron (NM_032002, intron 3 of 7)	33031.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	18.31	8.75	11.1	14.17	9.33	16.88	8.45	6.63	8.12
Merged-chr8-84783019-1	chr8	84782519	84783519	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	intron (NM_001081982, intron 1 of 9)	-8650.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	12.59	18.43	11.1	12.14	14.0	26.53	1.06	0.44	7.49
Merged-chr3-95660288-1	chr3	95659788	95660788	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008562, intron 2 of 2)	intron (NM_008562, intron 2 of 2)	1567.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	268.87	371.85	175.74	236.15	198.73	140.66	277.78	348.43	164.25
Merged-chr9-64086749-3	chr9	64086275	64087275	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040743, intron 2 of 2)	intron (NR_040743, intron 2 of 2)	6014.0	NR_040743	76814.0	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	12.01	5.99	12.02	10.12	4.2	1.61	12.67	5.31	8.12
Merged-chr15-6415594-1	chr15	6415094	6416094	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	28846.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	12.59	14.75	21.27	13.49	14.46	12.06	10.56	13.71	9.99
Merged-chr9-34488770-2	chr9	34488315	34489315	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026324)	promoter-TSS (NM_026324)	84.0	NM_001190914	67703.0	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kirre like nephrin family adhesion molecule 3	protein-coding	4.0	3.23	1.85	2.7	3.27	0.0	2.11	3.54	6.87
Merged-chr8-35725388-1	chr8	35724888	35725888	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101171.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	2.86	3.23	5.55	3.37	1.4	1.61	7.39	2.65	1.25
Merged-chr17-26547953-1	chr17	26547453	26548453	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13559.0	NM_026170	67458.0	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	10.3	19.81	8.32	25.64	15.86	20.9	20.07	11.05	8.12
Merged-chr11-103248888-2	chr11	103248373	103249373	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	18528.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	113.27	122.11	88.8	93.11	87.24	108.51	125.69	145.47	74.94
Merged-chr5-3195622-2	chr5	3195110	3196110	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-148283.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	9.15	11.06	5.55	11.47	9.33	11.25	4.22	6.63	6.25
Merged-chr1-155108077-1	chr1	155107577	155108577	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8441.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	25.74	6.45	9.25	8.1	8.86	0.0	20.07	14.15	5.0
Merged-chr6-39257768-1	chr6	39257268	39258268	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50995.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	38.9	36.4	41.62	37.11	40.59	49.03	31.69	42.01	31.85
Merged-chr17-87249175-3	chr17	87248666	87249666	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16781.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	9.15	8.29	3.7	18.22	9.33	9.65	6.34	5.31	0.62
Merged-chr2-91968178-1	chr2	91967678	91968678	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4615.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	2.86	1.84	5.55	13.49	8.4	8.04	10.56	8.84	6.87
Merged-chr15-79139834-1	chr15	79139334	79140334	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138581, intron 2 of 6)	B2_Mm2|SINE|B2	1417.0	NM_001310581	27660.0	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	2.29	4.15	9.25	2.7	1.4	0.0	1.06	4.42	1.87
Merged-chr8-33390338-1	chr8	33389838	33390838	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098233, intron 1 of 1)	intron (NM_001098233, intron 1 of 1)	4013.0	NM_001098233	75029.0	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	3.43	5.07	1.85	5.4	3.27	0.0	11.62	7.52	6.25
Merged-chr9-56324753-2	chr9	56324247	56325247	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	93303.0	NM_172924	244895.0	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	4.58	6.91	8.32	11.47	5.13	4.02	9.51	6.63	0.0
Merged-chr2-13417321-1	chr2	13416821	13417821	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 27 of 66)	L3|LINE|CR1	74555.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	1.14	3.23	1.85	4.05	2.33	6.43	4.22	4.86	2.5
Merged-chr15-100714706-1	chr15	100714206	100715206	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161768, intron 3 of 11)	intron (NM_001161768, intron 3 of 11)	5771.0	NM_001161768	207839.0	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	13.73	4.15	14.8	14.84	1.87	1.61	1.06	1.77	3.12
Merged-chr19-55744220-1	chr19	55743720	55744720	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	2410.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	65.79	99.53	149.84	91.09	108.23	147.09	119.35	112.75	128.65
Merged-chr19-37515083-1	chr19	37514583	37515583	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35335.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	11.44	11.52	7.4	6.07	8.86	4.82	13.73	10.17	6.87
Merged-chr2-71660860-2	chr2	71660356	71661356	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	Arthur1|DNA|hAT-Tip100	-58561.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	9.72	7.83	3.7	10.8	3.27	8.04	22.18	15.92	5.62
Merged-chr8-70615189-1	chr8	70614689	70615689	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1655.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	193.93	154.36	151.69	153.84	143.22	233.9	212.29	253.8	120.53
Merged-chr11-60698982-1	chr11	60698482	60699482	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159405)	promoter-TSS (NM_001159405)	-708.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	9.15	20.27	16.65	15.52	18.66	41.8	19.01	16.36	14.99
Merged-chr1-150375529-1	chr1	150375029	150376029	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145511, exon 10 of 14)	exon (NM_145511, exon 10 of 14)	-17309.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	2.29	7.37	2.77	3.37	3.73	2.41	3.17	4.42	2.5
Merged-chr16-44058896-2	chr16	44058383	44059383	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16875.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	5.15	2.76	3.7	3.37	2.8	0.0	3.17	2.21	2.5
Merged-chr4-89488035-1	chr4	89487535	89488535	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-177003.0	NM_007670	12579.0	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin dependent kinase inhibitor 2B	protein-coding	9.15	5.07	9.25	2.7	2.33	1.61	1.06	0.44	2.5
Merged-chr14-73041714-1	chr14	73041214	73042214	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162412, intron 2 of 4)	intron (NM_001162412, intron 2 of 4)	7400.0	NM_133720	70086.0	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	6.29	11.06	3.7	4.72	2.8	11.25	11.62	2.65	5.0
Merged-chr3-142530744-1	chr3	142530244	142531244	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	408.0	NM_145545	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	69.79	87.55	60.12	85.69	61.58	78.77	86.61	87.55	53.71
Merged-chr10-44427605-2	chr10	44427103	44428103	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31145.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	33.75	43.77	35.15	15.52	15.86	11.25	22.18	35.37	8.74
Merged-chr7-49198012-1	chr7	49197512	49198512	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	-35854.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	4.0	0.92	6.47	2.02	3.27	3.22	5.28	0.44	2.5
Merged-chr11-76894281-1	chr11	76893781	76894781	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10264.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	7.44	5.07	3.7	4.05	3.73	4.82	9.51	2.65	7.49
Merged-chr3-145157053-1	chr3	145156553	145157553	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38453.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	10.3	13.36	7.4	14.84	18.66	24.11	13.73	7.52	9.99
Merged-chr11-50149744-3	chr11	50149152	50150152	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029745, intron 6 of 20)	intron (NM_029745, intron 6 of 20)	18292.0	NM_029745	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	18.31	11.06	16.65	34.41	20.99	30.54	13.73	12.82	5.0
Merged-chr19-16156117-1	chr19	16155617	16156617	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	-7981.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	18.31	16.13	11.1	23.62	12.6	17.68	7.39	5.75	15.61
Merged-chr9-77689385-1	chr9	77688885	77689885	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52653.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	20.02	15.21	17.57	32.39	19.13	11.25	11.62	11.94	7.49
Merged-chr8-110075633-1	chr8	110075133	110076133	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4101.0	NM_175480	234725.0	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	1.72	7.37	3.7	2.7	2.8	2.41	2.11	3.1	1.87
Merged-chr18-4763957-1	chr18	4763457	4764457	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-48529.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	12.59	12.44	7.4	9.45	8.86	2.41	7.39	4.42	11.87
Merged-chr4-34922251-1	chr4	34921751	34922751	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10770.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	5.72	2.3	0.0	4.72	1.4	6.43	2.11	0.88	5.0
Merged-chr12-24675525-1	chr12	24675025	24676025	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004455, intron 1 of 4)	intron (NM_001004455, intron 1 of 4)	6270.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	4.58	3.23	5.55	3.37	0.47	1.61	1.06	0.44	2.5
Merged-chr2-6220334-2	chr2	6219843	6220843	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040333, intron 1 of 6)	intron (NR_040333, intron 1 of 6)	-7349.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	5.15	3.69	8.32	4.72	5.13	4.02	4.22	1.77	1.25
Merged-chr7-143007538-1	chr7	143007038	143008038	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020286, intron 2 of 7)	intron (NM_020286, intron 2 of 7)	1879.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	25.17	22.58	19.42	4.05	7.93	12.86	34.85	28.74	32.48
Merged-chr15-59822315-1	chr15	59821815	59822815	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27356.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	11.44	9.22	11.1	29.01	12.6	35.37	22.18	4.86	11.24
Merged-chr7-106814006-1	chr7	106813506	106814506	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360747)	promoter-TSS (NM_001360747)	-123.0	NM_028910	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	2.86	3.69	5.55	4.05	3.27	4.82	5.28	7.96	1.25
Merged-chr16-44717053-1	chr16	44716553	44717553	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7248.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	7.44	9.68	3.7	1.35	5.13	3.22	3.17	5.31	5.0
Merged-chr16-30602183-1	chr16	30601683	30602683	+	675.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_177632, exon 1 of 1)	3' UTR (NM_177632, exon 1 of 1)	2460.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	84.09	74.65	44.4	80.97	55.51	65.11	78.16	77.38	38.1
Merged-chr11-20142729-1	chr11	20142229	20143229	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29778.0	NM_146243	66713.0	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	2.29	3.23	0.92	6.07	2.33	0.0	4.22	4.86	5.62
Merged-chr6-115712393-1	chr6	115711893	115712893	+	675.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-35758.0	NM_029780	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	8.58	4.61	3.7	4.05	3.73	3.22	5.28	6.63	3.75
Merged-chr1-30779771-1	chr1	30779271	30780271	+	675.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	83485.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	4.58	3.23	5.55	1.35	5.13	7.23	4.22	1.77	8.12
Merged-chr10-85968268-3	chr10	85967795	85968795	+	674.972229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177772, intron 12 of 15)	intron (NM_177772, intron 12 of 15)	-10502.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	6.86	4.15	0.0	5.4	2.8	1.61	4.22	1.33	5.62
Merged-chr1-156571669-3	chr1	156571164	156572164	+	674.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	intron (NM_001136104, intron 1 of 12)	12877.0	NM_001136104	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	6.86	5.07	3.7	5.4	3.27	0.8	13.73	29.18	11.87
Merged-chr18-39612151-3	chr18	39611638	39612638	+	674.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124893.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	24.03	31.79	30.52	35.76	41.52	29.74	57.03	49.96	23.73
Merged-chr14-25452903-2	chr14	25452413	25453413	+	674.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6272.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	3.43	3.69	1.85	4.05	1.4	6.43	6.34	0.88	1.25
Merged-chr12-34674418-2	chr12	34673914	34674914	+	674.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	B4|SINE|B4	-145525.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	13.16	16.59	13.87	10.8	12.13	19.29	25.35	21.67	20.61
Merged-chr12-30266040-2	chr12	30265542	30266542	+	674.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324520, intron 8 of 16)	intron (NM_001324520, intron 8 of 16)	107333.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	12.01	9.68	7.4	12.14	6.06	14.47	2.11	2.21	1.25
Merged-chr15-99596373-3	chr15	99595879	99596879	+	674.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4821.0	NM_175087	11831.0	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	6.29	1.84	0.0	1.35	1.4	0.0	3.17	0.0	2.5
Merged-chr8-61643415-3	chr8	61642929	61643929	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-52260.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	10.3	9.68	14.8	12.14	10.73	10.45	9.51	4.42	5.0
Merged-chr9-45829333-3	chr9	45828844	45829844	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081373)	promoter-TSS (NM_001081373)	-706.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	13.73	14.75	4.62	10.8	3.73	19.29	17.96	10.61	13.74
Merged-chr10-79812437-3	chr10	79811920	79812920	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023128, intron 6 of 8)	intron (NM_023128, intron 6 of 8)	-8601.0	NM_030218	78906.0	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	7.44	1.38	1.85	3.37	2.8	3.22	4.22	1.33	2.5
Merged-chr17-84329655-3	chr17	84329153	84330153	+	674.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 28 of 37)	intron (NM_183021, intron 28 of 37)	136555.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	22.31	17.97	9.25	24.96	22.39	24.11	28.52	15.48	17.49
Merged-chr15-73613987-3	chr15	73613481	73614481	+	674.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	B1F1|SINE|Alu	3343.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	43.48	42.85	29.6	45.21	36.85	37.78	44.36	53.5	38.1
Merged-chr16-24027577-2	chr16	24027073	24028073	+	674.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38721.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	13.73	11.98	18.5	12.82	7.93	12.86	13.73	4.86	14.36
Merged-chr15-81057899-2	chr15	81057388	81058388	+	674.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 2 of 13)	G-rich|Low_complexity|Low_complexity	47159.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	8.01	4.61	16.65	10.8	2.8	15.27	11.62	3.1	3.75
Merged-chr5-135460979-2	chr5	135460497	135461497	+	674.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	RSINE1|SINE|B4	-66451.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	73.79	72.34	91.57	82.32	65.78	110.12	103.51	111.43	70.57
Merged-chr2-13396207-2	chr2	13395717	13396717	+	674.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081084, intron 28 of 66)	intron (NM_001081084, intron 28 of 66)	95659.0	NM_001081084	65969.0	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	7.44	2.3	9.25	2.7	7.46	3.22	3.17	1.33	1.87
Merged-chr1-57429950-3	chr1	57429459	57430459	+	674.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23285.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	11.44	9.22	0.0	9.45	14.46	3.22	7.39	3.98	5.0
Merged-chr7-101503568-3	chr7	101503072	101504072	+	674.6777950000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008548, intron 14 of 30)	intron (NM_001008548, intron 14 of 30)	28196.0	NR_029791	387157.0		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	5.15	8.75	7.4	3.37	3.27	8.84	7.39	5.31	5.0
Merged-chr9-22814981-1	chr9	22814481	22815481	+	674.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 21 of 22)	intron (NM_001360259, intron 21 of 22)	339266.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	5.72	13.36	13.87	26.31	15.39	24.92	7.39	6.19	6.25
Merged-chr13-111818450-1	chr13	111817950	111818950	+	674.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9457.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.29	1.38	0.0	7.42	2.33	3.22	0.0	0.0	2.5
Merged-chr9-61907147-2	chr9	61906649	61907649	+	674.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7361.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.0	5.53	12.95	7.42	7.46	8.04	5.28	5.75	10.62
Merged-chr2-59244562-2	chr2	59244070	59245070	+	674.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175464, intron 2 of 20)	intron (NM_175464, intron 2 of 20)	83720.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	50.34	56.22	45.32	60.05	55.05	44.21	61.26	49.08	14.36
Merged-chr9-62876302-3	chr9	62875781	62876781	+	674.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001102468)	TTS (NM_001102468)	-14257.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	15.45	17.97	21.27	19.57	13.06	21.7	22.18	8.4	17.49
Merged-chr11-46215512-3	chr11	46215054	46216054	+	674.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252459, intron 26 of 30)	MER20|DNA|hAT-Charlie	-20003.0	NM_177075	320116.0	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	1.72	3.23	3.7	0.0	3.27	0.0	4.22	1.77	1.25
Merged-chr11-78382855-2	chr11	78382350	78383350	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008238, intron 1 of 8)	intron (NM_008238, intron 1 of 8)	3758.0	NM_008238	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	3.43	2.76	7.4	5.4	3.27	9.65	6.34	1.77	5.0
Merged-chr11-50359742-1	chr11	50359242	50360242	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	16.59	10.6	11.1	16.19	14.93	9.65	11.62	11.94	8.74
Merged-chr13-113605393-2	chr13	113604959	113605959	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	13105.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	29.75	22.58	33.3	22.27	7.0	20.09	26.4	13.27	23.11
Merged-chr10-84714016-1	chr10	84713516	84714516	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027423, intron 24 of 27)	MIR|SINE|MIR	-42032.0	NM_001024918	71137.0	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	1.14	0.92	5.55	2.7	1.87	1.61	2.11	0.44	8.12
Merged-chr15-7073465-2	chr15	7072974	7073974	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56098.0	NM_001113386	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.29	5.53	0.0	4.72	1.4	4.82	2.11	0.0	3.75
Merged-chr5-64866849-1	chr5	64866349	64867349	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63326.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	5.15	5.07	11.1	7.42	3.73	3.22	3.17	3.1	2.5
Merged-chr11-117094303-2	chr11	117093788	117094788	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16940.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	16.59	6.45	5.55	16.19	10.73	14.47	7.39	7.52	5.62
Merged-chr15-76537827-1	chr15	76537327	76538327	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013909, intron 2 of 8)	intron (NM_013909, intron 2 of 8)	919.0	NM_013909	30840.0	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	20.02	19.35	13.87	12.82	14.0	36.17	14.79	22.99	24.98
Merged-chr3-55673414-1	chr3	55672914	55673914	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 48 of 57)	intron (NM_030595, intron 48 of 57)	-109096.0	NM_010750	17116.0	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	3.43	2.76	3.7	2.7	2.33	6.43	2.11	1.77	5.62
Merged-chr11-20420071-1	chr11	20419571	20420571	+	674.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB5_1-I_MM-int|LTR|ERVK	-87358.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	3.43	1.84	5.55	2.7	1.87	3.22	43.3	38.91	11.87
Merged-chr10-98754474-2	chr10	98753979	98754979	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160163.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	17.73	11.06	14.8	10.12	11.2	10.45	15.84	5.31	14.36
Merged-chr13-109907785-1	chr13	109907285	109908285	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	3976.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	2.86	2.3	0.0	2.7	5.6	1.61	2.11	3.54	1.25
Merged-chr8-46547448-2	chr8	46546952	46547952	+	674.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4617.0	NM_027973	71876.0	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	6.29	4.61	7.4	6.75	1.87	1.61	5.28	0.88	5.62
Merged-chr6-59219953-1	chr6	59219453	59220453	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11083.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	12.01	2.76	6.47	3.37	3.27	4.02	2.11	2.65	5.62
Merged-chr14-117786069-1	chr14	117785569	117786569	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	167778.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.57	0.92	0.0	4.05	2.33	5.63	2.11	1.33	1.25
Merged-chr1-72214706-1	chr1	72214206	72215206	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2392.0	NM_001357488	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	4.0	2.3	1.85	6.75	3.73	0.8	2.11	3.98	5.62
Merged-chr7-79499884-1	chr7	79499384	79500384	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040311)	promoter-TSS (NR_040311)	-142.0	NR_040311	101694.0	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	6.86	0.46	0.0	1.35	0.0	1.61	0.0	2.21	0.0
Merged-chr6-13840006-1	chr6	13839506	13840506	+	674.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001330666)	promoter-TSS (NM_001330666)	-64.0	NM_145066	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	11.44	4.61	0.0	13.49	7.0	8.84	5.28	7.96	7.49
Merged-chr4-149706177-3	chr4	149705718	149706718	+	674.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4589.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	33.18	40.55	32.37	35.76	20.99	40.19	88.72	87.55	58.71
Merged-chr17-48118803-3	chr17	48118322	48119322	+	674.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27485.0	NM_001177897	328829.0	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	3.43	2.76	5.55	9.45	4.2	3.22	3.17	3.54	3.12
Merged-chr16-94239794-3	chr16	94239276	94240276	+	674.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	ORR1D2|LTR|ERVL-MaLR	50515.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	78.37	57.6	45.32	93.11	46.18	64.3	76.05	97.72	39.35
Merged-chr4-47311648-3	chr4	47311156	47312156	+	674.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 39 of 39)	intron (NM_009928, intron 39 of 39)	-41566.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	9.72	7.37	5.55	14.17	12.6	8.04	7.39	9.73	12.49
Merged-chr7-45452971-2	chr7	45452470	45453470	+	674.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B1_Mus1|SINE|Alu	6916.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	5.15	4.15	9.25	8.77	5.6	8.04	9.51	1.77	5.0
Merged-chr4-132532725-2	chr4	132532192	132533192	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007512, intron 3 of 3)	intron (NM_007512, intron 3 of 3)	2722.0	NM_007512	11983.0	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	25.17	25.8	16.65	33.74	33.12	48.23	43.3	66.77	34.35
Merged-chr1-4769997-2	chr1	4769481	4770481	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15745.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	4.58	4.61	1.85	6.07	2.8	3.22	1.06	2.65	5.0
Merged-chr15-13171341-2	chr15	13170849	13171849	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	2326.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.57	2.3	5.55	6.75	3.27	4.02	1.06	2.21	5.62
Merged-chr6-136967264-2	chr6	136966767	136967767	+	674.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12744.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	3.43	2.76	11.1	23.62	15.86	20.9	21.12	15.92	6.25
Merged-chr10-23840695-1	chr10	23840195	23841195	+	674.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10767.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	1.72	5.99	5.55	5.4	6.06	8.04	2.11	5.31	2.5
Merged-chrX-12673203-2	chrX	12672723	12673723	+	674.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175141, intron 1 of 6)	intron (NM_175141, intron 1 of 6)	416.0	NM_175141	69155.0	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	51.48	60.36	50.87	44.53	55.51	45.01	47.53	57.04	46.22
Merged-chr11-86996549-2	chr11	86996041	86997041	+	674.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2779.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	39.47	45.62	47.17	35.76	27.99	40.99	33.8	42.89	46.84
Merged-chr7-68113373-3	chr7	68112875	68113875	+	674.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	150858.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	12.59	10.6	1.85	2.7	2.8	0.0	11.62	1.77	3.12
Merged-chr1-36059007-3	chr1	36058498	36059498	+	674.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-9402.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	5.15	6.91	10.17	6.07	3.73	14.47	5.28	6.19	0.0
Merged-chr7-81454469-2	chr7	81453969	81454969	+	674.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252526, intron 1 of 11)	CpG	289.0	NM_001252525	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	12.59	1.38	3.7	3.37	1.87	1.61	2.11	3.1	3.12
Merged-chr8-47906303-2	chr8	47905812	47906812	+	674.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	81830.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	4.58	4.61	2.77	3.37	3.73	4.82	4.22	2.21	5.0
Merged-chr1-179232234-3	chr1	179231744	179232744	+	674.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	285797.0	NM_027188	69726.0	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	13.73	9.68	13.87	2.7	5.6	4.02	4.22	3.1	5.0
Merged-chr9-113745576-3	chr9	113745050	113746050	+	674.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114347, intron 1 of 39)	intron (NM_001114347, intron 1 of 39)	4077.0	NM_001114347	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	22.31	38.25	27.75	37.11	24.26	23.31	29.57	25.2	21.23
Merged-chr13-92274011-3	chr13	92273507	92274507	+	674.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010829, exon 15 of 24)	exon (NM_010829, exon 15 of 24)	-80776.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	21.17	14.75	5.55	29.69	40.12	15.27	20.07	20.78	11.24
Merged-chr17-31119602-3	chr17	31119124	31120124	+	674.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	9987.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.58	0.92	13.87	8.77	1.87	3.22	3.17	0.44	1.87
Merged-chr17-13739035-3	chr17	13738486	13739486	+	674.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-21555.0	NR_151731	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	8.58	3.23	2.77	4.72	2.33	2.41	5.28	6.63	0.0
Merged-chr11-110373251-3	chr11	110372738	110373738	+	674.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1b|LINE|L1	-25864.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	9.72	14.75	1.85	22.27	25.19	20.9	36.97	25.2	20.61
Merged-chr12-78859015-3	chr12	78858500	78859500	+	674.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023721, intron 1 of 8)	(A)n|Simple_repeat|Simple_repeat	2638.0	NM_023721	73834.0	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	29.75	31.79	28.67	25.64	48.05	33.76	41.19	46.87	26.85
Merged-chr10-94553288-1	chr10	94552788	94553788	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359760, intron 1 of 3)	intron (NM_001359760, intron 1 of 3)	2368.0	NM_001359760	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	19.45	12.9	12.02	15.52	9.8	8.84	13.73	15.03	7.49
Merged-chr1-36065487-1	chr1	36064987	36065987	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2913.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	48.05	44.24	18.5	56.68	33.59	36.97	47.53	56.16	24.98
Merged-chr18-37518356-1	chr18	37517856	37518856	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053147)	promoter-TSS (NM_053147)	3.0	NM_053147	93893.0	Mm.348054	NM_053147	ENSMUSG00000073591	Pcdhb22	Pcdhb15|PcdhbV	protocadherin beta 22	protein-coding	0.57	2.76	3.7	3.37	2.33	6.43	2.11	0.0	7.49
Merged-chr2-31024841-3	chr2	31024337	31025337	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42558.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	8.58	10.6	12.95	5.4	6.06	13.66	14.79	1.77	6.25
Merged-chr4-94900907-2	chr4	94900412	94901412	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27931.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	8.01	3.69	4.62	2.7	5.6	3.22	4.22	3.98	3.12
Merged-chr13-117220803-2	chr13	117220356	117221356	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010330, exon 1 of 9)	exon (NM_010330, exon 1 of 9)	283.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	6.86	1.84	7.4	4.05	2.33	1.61	2.11	3.1	1.25
Merged-chr13-48842013-1	chr13	48841513	48842513	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011078, intron 1 of 21)	intron (NM_011078, intron 1 of 21)	28872.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	15.45	12.44	3.7	12.14	11.66	3.22	7.39	7.52	5.0
Merged-chr13-103869081-1	chr13	103868581	103869581	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 4 of 26)	intron (NM_001005868, intron 4 of 26)	51505.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.15	8.29	2.77	7.42	7.0	2.41	5.28	3.1	1.25
Merged-chr14-65968492-2	chr14	65967987	65968987	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013492)	promoter-TSS (NM_013492)	4.0	NM_013492	12759.0	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	3.43	2.3	0.0	0.67	0.47	0.0	3.17	1.33	2.5
Merged-chr9-84343863-2	chr9	84343363	84344363	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395082.0	NM_199195	12040.0	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	1.72	3.23	4.62	0.67	2.33	0.0	1.06	1.77	1.25
Merged-chr9-66896254-2	chr9	66895746	66896746	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23459.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	100.68	138.7	70.3	95.14	91.44	61.09	94.0	114.96	65.58
Merged-chr1-170854422-1	chr1	170853922	170854922	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081304, intron 2 of 15)	RMER17A|LTR|ERVK	13349.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	103.54	105.06	48.1	119.43	78.84	134.23	87.66	103.02	83.69
Merged-chr5-146706154-1	chr5	146705654	146706654	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88802.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	8.01	1.84	0.0	4.72	2.33	0.0	4.22	3.98	5.0
Merged-chr16-97778828-1	chr16	97778328	97779328	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15073.0	NM_023663	72388.0	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	4.0	4.15	7.4	0.0	1.87	3.22	0.0	1.77	2.5
Merged-chr10-82083593-1	chr10	82083093	82084093	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	35466.0	NM_001024626	408062.0	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	27.46	29.03	35.15	20.24	9.33	25.72	62.31	44.22	28.73
Merged-chr5-40953113-1	chr5	40952613	40953613	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	754578.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.72	4.61	5.55	0.0	2.8	4.02	3.17	0.88	0.0
Merged-chr7-30244625-1	chr7	30244125	30245125	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152437, intron 22 of 32)	intron (NR_152437, intron 22 of 32)	-7860.0	NM_001289817	381867.0	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	5.72	3.23	12.95	4.72	2.8	8.84	1.06	3.98	6.87
Merged-chr1-173941757-1	chr1	173941257	173942257	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	735.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	22.31	23.5	1.85	30.36	12.6	0.0	110.9	148.13	73.69
Merged-chrY-90800413-1	chrY	90799913	90800913	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	14971.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.0	0.92	0.0	4.05	0.93	6.43	12.67	6.19	15.61
Merged-chr18-32970400-1	chr18	32969900	32970900	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009793, intron 1 of 10)	intron (NM_009793, intron 1 of 10)	31359.0	NM_009793	12326.0	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	5.72	9.22	3.7	2.02	1.87	0.0	5.28	1.33	5.0
Merged-chr7-126645862-1	chr7	126645362	126646362	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3447.0	NM_029339	75565.0	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	16.59	9.68	3.7	15.52	12.6	8.04	23.24	13.27	19.98
Merged-chr5-105584172-1	chr5	105583672	105584672	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133897, intron 3 of 3)	intron (NM_133897, intron 3 of 3)	64701.0	NM_133897	100604.0	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	19.45	17.51	16.65	13.49	15.86	26.53	15.84	6.63	9.99
Merged-chr6-71273908-1	chr6	71273408	71274408	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145568, intron 1 of 3)	intron (NM_145568, intron 1 of 3)	1889.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	9.15	10.14	7.4	10.12	11.2	4.82	13.73	6.63	7.49
Merged-chr17-80756230-1	chr17	80755730	80756730	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-28205.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	5.15	3.23	3.7	1.35	5.6	0.0	4.22	4.42	0.0
Merged-chr10-127064229-1	chr10	127063729	127064729	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009870, exon 2 of 8)	5' UTR (NM_009870, exon 2 of 8)	694.0	NM_001355005	12567.0	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	92.1	68.2	43.47	101.21	108.23	65.11	87.66	62.35	36.85
Merged-chr14-9401045-1	chr14	9400545	9401545	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-483050.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	2.86	4.15	3.7	4.05	3.27	1.61	4.22	4.86	1.25
Merged-chr1-153910031-1	chr1	153909531	153910531	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008131)	TTS (NM_008131)	10102.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	35.47	35.94	47.17	31.71	21.93	40.99	30.63	31.39	28.73
Merged-chr12-101082479-1	chr12	101081979	101082979	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038047)	promoter-TSS (NR_038047)	28.0	NR_038049	319760.0	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	130.43	135.01	100.82	82.99	115.23	123.78	119.35	114.96	78.69
Merged-chr2-32150957-3	chr2	32150466	32151466	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159634)	promoter-TSS (NM_001159634)	-182.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	18.88	14.75	22.2	29.69	10.73	16.88	26.4	10.61	6.87
Merged-chr3-9217997-1	chr3	9217497	9218497	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32570.0	NM_177660	229055.0	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	5.15	4.15	1.85	1.35	2.33	8.04	3.17	1.77	3.75
Merged-chr11-11746387-1	chr11	11745887	11746887	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	intron (NM_001301865, intron 3 of 6)	56210.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	16.02	11.98	12.02	11.47	9.33	13.66	6.34	5.31	8.74
Merged-chr9-118887311-1	chr9	118886811	118887811	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 12 of 13)	ORR1B2|LTR|ERVL-MaLR	-39225.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.29	1.38	16.65	9.45	3.27	2.41	3.17	5.75	7.49
Merged-chr8-19707282-1	chr8	19706782	19707782	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-22294.0	NM_001270553	100861668.0	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	6.29	13.36	11.1	16.19	11.66	11.25	4.22	9.73	3.75
Merged-chr19-61021720-1	chr19	61021220	61022220	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	119120.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	5.15	6.45	1.85	8.77	4.67	8.84	1.06	0.44	3.75
Merged-chr6-33965831-1	chr6	33965331	33966331	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-63617.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	5.72	6.45	7.4	3.37	10.26	12.06	5.28	5.31	11.87
Merged-chr13-58126361-3	chr13	58125849	58126849	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029872, exon 1 of 1)	3' UTR (NM_029872, exon 1 of 1)	2207.0	NM_029872	77134.0	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	18.31	29.03	21.27	26.31	18.19	19.29	15.84	14.59	8.74
Merged-chr17-29603438-1	chr17	29602938	29603938	+	674.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198647, intron 12 of 12)	intron (NM_198647, intron 12 of 12)	-7133.0	NR_045447	74092.0	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	2.29	0.92	5.55	4.05	1.87	4.02	3.17	0.0	1.25
Merged-chr4-133217753-1	chr4	133217253	133218253	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3056.0	NM_027152	69655.0	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	2.86	3.23	7.4	4.72	1.87	3.22	5.28	0.44	5.0
Merged-chr2-156705656-1	chr2	156705156	156706156	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146128, intron 4 of 12)	intron (NM_146128, intron 4 of 12)	15253.0	NR_040505	74846.0	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	1.14	4.15	1.85	2.02	0.0	1.61	5.28	0.88	0.0
Merged-chr6-42583669-1	chr6	42583169	42584169	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13703.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	4.58	2.3	0.0	0.0	6.06	1.61	4.22	0.44	2.5
Merged-chr6-129922874-1	chr6	129922374	129923374	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-9650.0	NM_008463	16636.0	Mm.14111	NM_008463	ENSMUSG00000030173	Klra5	Ly49e	killer cell lectin-like receptor, subfamily A, member 5	protein-coding	0.0	2.3	0.0	1.35	1.4	0.8	1.06	0.88	2.5
Merged-chr2-32607429-2	chr2	32606927	32607927	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025310, intron 1 of 5)	intron (NM_001025310, intron 1 of 5)	442.0	NR_110347	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	145.3	104.6	94.35	145.74	82.57	97.26	198.56	126.9	103.67
Merged-chrX-169213947-1	chrX	169213447	169214447	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	-26738.0	NM_009666	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	10.87	19.35	8.32	8.77	5.13	6.43	7.39	6.63	4.37
Merged-chr2-84758910-2	chr2	84758422	84759422	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16507.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	1.72	3.69	3.7	2.02	0.93	1.61	5.28	1.77	3.12
Merged-chr7-115616148-2	chr7	115615656	115616656	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025559, intron 7 of 15)	intron (NM_001025559, intron 7 of 15)	185453.0	NM_001277328	20679.0	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	35.47	47.92	20.35	33.74	47.12	33.76	29.57	34.49	19.98
Merged-chr17-46712100-1	chr17	46711600	46712600	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145488, exon 1 of 17)	exon (NM_145488, exon 1 of 17)	637.0	NM_145488	224824.0	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	40.62	25.34	52.72	37.11	24.26	62.7	36.97	11.05	27.48
Merged-chr19-18687726-1	chr19	18687226	18688226	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026120, intron 3 of 7)	RSINE1|SINE|B4	16946.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	4.0	4.15	0.0	2.02	3.27	4.82	2.11	2.65	0.0
Merged-chr10-18545944-2	chr10	18545446	18546446	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_019487, exon 1 of 4)	5' UTR (NM_019487, exon 1 of 4)	130.0	NM_019487	56016.0	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	1.14	3.23	10.17	4.72	0.93	2.41	2.11	0.44	9.37
Merged-chr2-27381449-1	chr2	27380949	27381949	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	46159.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	16.59	20.27	11.1	18.89	14.93	14.47	28.52	10.17	9.99
Merged-chr12-85516046-1	chr12	85515546	85516546	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42156.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.72	1.84	0.0	6.75	3.27	6.43	6.34	3.1	6.25
Merged-chr18-55203470-1	chr18	55202970	55203970	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-210879.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	16.02	12.44	3.7	10.12	15.39	19.29	0.0	1.77	8.12
Merged-chr6-8510633-1	chr6	8510133	8511133	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133236, intron 1 of 7)	intron (NM_133236, intron 1 of 7)	1033.0	NM_133236	170772.0	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	31.46	13.36	14.8	35.09	22.86	20.9	30.63	11.05	11.24
Merged-chr19-8747562-1	chr19	8747062	8748062	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019829, intron 4 of 9)	B2_Mm2|SINE|B2	4591.0	NR_105958	102465599.0		NR_105958	ENSMUSG00000098844	Mir6992	Gm27906|mmu-mir-6992	microRNA 6992	ncRNA	8.58	5.07	9.25	2.7	3.27	0.8	7.39	3.1	5.0
Merged-chr7-90018250-1	chr7	90017750	90018750	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10909.0	NR_110365	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	49.77	73.73	56.42	56.0	55.51	65.91	61.26	72.96	56.83
Merged-chr3-63964020-1	chr3	63963520	63964520	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_015728, exon 1 of 6)	exon (NM_015728, exon 1 of 6)	713.0	NM_001272035	11416.0	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	145.3	155.28	121.17	150.46	141.82	165.58	166.88	132.21	101.8
Merged-chr8-74999671-1	chr8	74999171	75000171	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178017, exon 3 of 11)	exon (NM_178017, exon 3 of 11)	6021.0	NM_178017	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	6.86	1.84	4.62	1.35	2.8	4.82	3.17	1.77	6.25
Merged-chr1-161295677-2	chr1	161295169	161296169	+	674.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44459.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	4.58	2.3	9.25	6.07	4.67	1.61	3.17	5.31	6.25
Merged-chr11-76777830-1	chr11	76777330	76778330	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007754, exon 21 of 21)	3' UTR (NM_007754, exon 21 of 21)	-14252.0	NM_001356321	53334.0	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	14.87	9.68	14.8	27.66	19.13	21.7	19.01	28.3	16.24
Merged-chr5-143058459-1	chr5	143057959	143058959	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	54561.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	46.34	71.42	58.27	45.88	36.85	90.83	67.6	55.71	47.46
Merged-chr6-83708314-2	chr6	83707814	83708814	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075094, intron 1 of 2)	intron (NR_075094, intron 1 of 2)	2511.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	6.29	0.92	7.4	6.07	0.93	6.43	1.06	5.75	1.25
Merged-chr12-70831349-1	chr12	70830849	70831849	+	674.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	5835.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	1.72	3.69	3.7	1.35	2.33	3.22	0.0	3.1	6.25
Merged-chr9-41461936-2	chr9	41461454	41462454	+	673.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-12939.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	1.72	1.84	0.0	5.4	3.27	3.22	3.17	0.44	1.25
Merged-chr11-89022552-2	chr11	89022051	89023051	+	673.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23148.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	64.07	72.8	65.67	89.74	63.91	94.04	83.44	86.66	86.18
Merged-chr6-142814807-2	chr6	142814295	142815295	+	673.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045707, intron 2 of 6)	intron (NR_045707, intron 2 of 6)	564.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	3.43	2.3	3.7	4.05	3.27	0.0	1.06	0.88	2.5
Merged-chr18-50130627-2	chr18	50130128	50131128	+	673.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008292, intron 2 of 23)	intron (NM_008292, intron 2 of 23)	2427.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	17.16	21.66	18.5	33.06	15.39	19.29	40.14	50.85	36.22
Merged-chr9-89204404-3	chr9	89203896	89204896	+	673.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	intron (NM_007534, intron 1 of 1)	5123.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	12.01	8.75	3.7	9.45	3.27	6.43	10.56	9.73	6.25
Merged-chr1-91054264-3	chr1	91053771	91054771	+	673.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	intron (NM_008515, intron 1 of 22)	827.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	129.28	133.63	132.27	80.97	64.84	94.85	122.52	124.25	89.31
Merged-chr6-114782194-3	chr6	114781690	114782690	+	673.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	139093.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	22.31	8.75	17.57	17.54	17.73	20.09	10.56	8.4	5.0
Merged-chr17-84340705-3	chr17	84340221	84341221	+	673.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	125487.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	7.44	5.07	0.92	5.4	2.8	3.22	6.34	5.31	3.75
Merged-chr2-86020628-2	chr2	86020107	86021107	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_146578)	promoter-TSS (NM_146578)	-33.0	NM_146578	258571.0	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	4.58	3.23	0.0	2.7	5.6	0.0	3.17	4.42	5.0
Merged-chr10-21826071-2	chr10	21825578	21826578	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56106.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	14.87	15.21	22.2	13.49	14.46	24.92	22.18	21.67	19.98
Merged-chr11-31949570-2	chr11	31949097	31950097	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16036.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	12.59	7.37	3.7	6.07	4.2	3.22	7.39	4.86	2.5
Merged-chr2-167962517-2	chr2	167962020	167963020	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	30193.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	11.44	8.75	16.65	15.52	9.33	22.51	11.62	9.29	9.99
Merged-chr7-123084954-2	chr7	123084455	123085455	+	673.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38930.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	9.72	6.45	9.25	13.49	6.53	10.45	7.39	5.75	1.87
Merged-chr19-46599678-2	chr19	46599157	46600157	+	673.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	551.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	62.93	70.5	117.47	77.59	75.57	84.4	73.93	92.86	68.07
Merged-chr15-101988336-2	chr15	101987877	101988877	+	673.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	15965.0	NM_031170	16691.0	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	6.29	1.38	5.55	1.35	1.87	7.23	2.11	4.42	1.25
Merged-chr1-88260501-4	chr1	88260008	88261008	+	673.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_198652, exon 8 of 8)	3' UTR (NM_198652, exon 8 of 8)	8900.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	11.44	14.28	32.37	17.54	13.53	21.7	11.62	3.98	24.98
Merged-chr1-172619439-3	chr1	172618935	172619935	+	673.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13539.0	NM_026725	68440.0	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	6.29	2.3	3.7	1.35	2.33	0.0	1.06	1.33	5.0
Merged-chr9-21859738-1	chr9	21859238	21860238	+	673.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7103.0	NM_177030	319899.0	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	5.15	7.37	7.4	8.1	5.13	11.25	14.79	10.17	8.12
Merged-chr11-79673894-2	chr11	79673395	79674395	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045898, intron 2 of 2)	intron (NR_045898, intron 2 of 2)	1191.0	NR_045898	72218.0	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	16.59	10.14	23.12	15.52	10.73	8.84	9.51	8.84	13.74
Merged-chr4-149791732-2	chr4	149791246	149792246	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17479.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	375.84	333.15	279.34	337.36	331.22	301.42	329.53	457.2	201.1
Merged-chr2-153118372-2	chr2	153117861	153118861	+	673.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172117, intron 1 of 12)	L1MA4|LINE|L1	9893.0	NM_010407	15162.0	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	68.07	77.87	65.67	91.09	56.45	83.59	95.06	100.81	89.93
Merged-chr6-4797008-2	chr6	4796526	4797526	+	673.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49720.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	18.31	20.27	12.95	21.59	8.86	12.86	7.39	13.71	8.74
Merged-chr4-83567891-3	chr4	83567371	83568371	+	673.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355549, intron 6 of 24)	intron (NM_001355549, intron 6 of 24)	42326.0	NM_001355378	320226.0	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	4.58	1.38	1.85	2.7	4.2	0.0	5.28	2.65	3.75
Merged-chr2-6130208-1	chr2	6129708	6130708	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159657)	promoter-TSS (NM_001159657)	-23.0	NM_001159657	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	6.29	1.38	5.55	3.37	2.8	1.61	2.11	1.77	5.0
Merged-chr1-39782084-2	chr1	39781586	39782586	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	23246.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	10.3	5.07	0.0	3.37	5.13	6.43	6.34	5.31	1.25
Merged-chr8-80992129-2	chr8	80991641	80992641	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 6 of 9)	intron (NM_027554, intron 6 of 9)	22765.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	5.72	3.23	6.47	7.42	5.13	9.65	6.34	4.86	3.75
Merged-chr15-55307992-1	chr15	55307492	55308492	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 1 of 47)	intron (NM_181277, intron 1 of 47)	242.0	NM_181277	12818.0	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	3.43	0.92	3.7	3.37	3.73	0.0	4.22	2.65	3.75
Merged-chr18-33790240-2	chr18	33789728	33790728	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4664.0	NR_038152	69749.0	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	6.86	4.61	6.47	6.07	1.4	1.61	1.06	0.88	2.5
Merged-chr12-84190235-2	chr12	84189730	84190730	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163501, intron 1 of 12)	intron (NM_001163501, intron 1 of 12)	3785.0	NM_001163502	238317.0	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	12.01	14.75	18.5	4.72	4.2	8.04	19.01	5.75	3.75
Merged-chr2-38509168-2	chr2	38508703	38509703	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2494.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	7.44	4.15	9.25	6.07	7.93	4.02	5.28	3.1	3.75
Merged-chr6-34865530-1	chr6	34865030	34866030	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	intron (NM_197986, intron 1 of 1)	2384.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	56.63	61.75	46.25	72.87	66.24	65.91	67.6	89.32	36.22
Merged-chr4-123343392-1	chr4	123342892	123343892	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001256019)	promoter-TSS (NM_001256019)	-140.0	NM_007558	12163.0	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	3.43	3.69	1.85	7.42	3.27	11.25	6.34	1.77	5.0
Merged-chr18-36483382-2	chr18	36482893	36483893	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-28898.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	18.31	9.68	12.02	24.29	7.46	13.66	11.62	3.98	6.25
Merged-chr11-119040243-1	chr11	119039743	119040743	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013926, intron 2 of 4)	intron (NM_013926, intron 2 of 4)	670.0	NM_013926	30951.0	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	27.46	23.96	17.57	20.92	17.73	24.11	23.24	17.69	17.49
Merged-chr3-90295783-2	chr3	90295291	90296291	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25642.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	21.74	23.04	20.35	18.22	13.53	22.51	33.8	26.97	28.73
Merged-chr19-21781733-2	chr19	21781224	21782224	+	673.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031997, intron 2 of 24)	intron (NM_031997, intron 2 of 24)	3384.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	10.3	9.68	7.4	6.75	5.13	5.63	13.73	4.86	9.37
Merged-chr16-84814719-2	chr16	84814222	84815222	+	673.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023844, intron 5 of 9)	intron (NM_023844, intron 5 of 9)	20254.0	NM_001358500	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	6.29	4.15	7.4	7.42	6.06	7.23	2.11	5.31	4.37
Merged-chr3-108346024-2	chr3	108345499	108346499	+	673.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 13 of 19)	intron (NM_019972, intron 13 of 19)	-18912.0	NM_026831	68753.0	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	10.3	9.22	17.57	6.75	4.2	0.0	2.11	5.75	0.0
Merged-chr13-34279176-2	chr13	34278689	34279689	+	673.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	65993.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	59.49	41.93	29.6	49.93	46.65	57.87	44.36	38.91	25.61
Merged-chr7-3719329-2	chr7	3718805	3719805	+	673.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011095, exon 4 of 15)	exon (NM_011095, exon 4 of 15)	1077.0	NM_001357394	18733.0	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	26.89	27.65	44.4	11.47	8.86	18.49	49.64	32.28	61.83
Merged-chr8-36953144-3	chr8	36952737	36953737	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001194940)	promoter-TSS (NM_001194940)	-795.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	22.31	41.01	18.5	37.11	36.85	26.53	44.36	32.72	34.97
Merged-chrX-134551133-1	chrX	134550633	134551633	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 13 of 18)	intron (NM_013482, intron 13 of 18)	-9463.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	7.44	6.91	9.25	7.42	4.67	8.04	0.0	5.31	9.99
Merged-chr17-35937906-3	chr17	35937408	35938408	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9246.0	NR_028278	667766.0	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	4.58	2.76	0.0	4.05	1.4	0.0	4.22	2.65	1.25
Merged-chr7-98601931-3	chr7	98601427	98602427	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172280, intron 15 of 19)	intron (NM_172280, intron 15 of 19)	54642.0	NM_172280	233545.0	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	10.3	5.53	8.32	7.42	9.8	3.22	6.34	5.75	2.5
Merged-chr3-132755989-1	chr3	132755489	132756489	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163455, intron 22 of 25)	intron (NM_001163455, intron 22 of 25)	71845.0	NM_001163455	271981.0	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	35.47	39.63	20.35	45.21	45.25	32.15	32.74	38.47	14.99
Merged-chr9-62121957-3	chr9	62121469	62122469	+	673.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_039595)	TTS (NR_039595)	625.0	NR_039595	100628602.0		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	25.74	10.6	36.07	30.36	13.53	21.7	21.12	11.5	7.49
Merged-chr11-54888238-1	chr11	54887738	54888738	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-14616.0	NM_001329860	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	4.0	6.91	8.32	13.49	7.0	11.25	3.17	3.98	9.99
Merged-chr17-12768997-3	chr17	12768553	12769553	+	673.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010515, intron 1 of 47)	intron (NM_010515, intron 1 of 47)	653.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	29.17	14.28	13.87	38.46	25.66	20.09	67.6	45.1	21.23
Merged-chr6-108742263-3	chr6	108741751	108742751	+	673.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-40808.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	5.72	4.61	0.0	4.05	1.4	4.82	2.11	1.77	2.5
Merged-chr17-24209016-3	chr17	24208531	24209531	+	673.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010947, exon 1 of 6)	5' UTR (NM_010947, exon 1 of 6)	356.0	NM_010947	18209.0	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	6.29	2.3	0.0	2.02	2.33	0.0	1.06	0.44	1.25
Merged-chr10-67004962-2	chr10	67004463	67005463	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_110511)	promoter-TSS (NR_110511)	-112.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	179.62	153.44	58.27	166.66	167.94	86.01	143.64	153.87	59.95
Merged-chr13-47044480-2	chr13	47043976	47044976	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172262, intron 1 of 20)	intron (NM_172262, intron 1 of 20)	977.0	NM_172262	218214.0	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	9.15	11.06	5.55	14.17	6.53	8.84	7.39	10.61	6.25
Merged-chr6-70805486-2	chr6	70804993	70805993	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13318.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	6.86	6.45	12.95	1.35	9.8	8.04	8.45	14.15	6.25
Merged-chr1-155425958-2	chr1	155425478	155426478	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8534.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	2.29	0.46	1.85	6.07	1.4	1.61	0.0	6.19	1.25
Merged-chr9-57723394-2	chr9	57722898	57723898	+	673.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153799, intron 3 of 6)	intron (NM_153799, intron 3 of 6)	14829.0	NM_153799	353190.0	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	12.59	17.97	19.42	10.12	7.0	14.47	10.56	4.42	15.61
Merged-chr14-25614109-3	chr14	25613586	25614586	+	673.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183208, intron 6 of 23)	intron (NM_183208, intron 6 of 23)	10573.0	NM_001309430	100188919.0	Mm.473810	NM_001309430		Gm45915	Israa	predicted gene, 45915	protein-coding	27.46	20.74	5.55	33.74	13.53	12.86	13.73	9.29	13.12
Merged-chr15-94688288-2	chr15	94687801	94688801	+	673.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178789, intron 2 of 7)	intron (NM_178789, intron 2 of 7)	59116.0	NM_178789	320709.0	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	8.01	6.91	0.92	45.88	23.79	22.51	92.94	69.42	52.46
Merged-chr8-107572753-2	chr8	107572230	107573230	+	673.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	15752.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	4.58	1.84	1.85	3.37	0.93	0.0	3.17	1.33	1.25
Merged-chr7-121641410-2	chr7	121640914	121641914	+	673.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033173)	TTS (NM_001033173)	51511.0	NR_131051	69407.0		NR_131051	ENSMUSG00000108409	1700025J12Rik	-	RIKEN cDNA 1700025J12 gene	ncRNA	0.57	1.38	3.7	10.12	3.73	3.22	4.22	7.07	5.0
Merged-chr14-45085375-3	chr14	45084877	45085877	+	673.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97266.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	8.01	11.52	10.17	15.52	5.6	13.66	5.28	5.75	14.99
Merged-chr10-69307237-3	chr10	69306726	69307726	+	673.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45686.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	9.72	17.51	15.72	18.89	10.73	8.84	42.25	35.37	31.85
Merged-chr6-38506701-3	chr6	38506193	38507193	+	673.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106130)	promoter-TSS (NR_106130)	-632.0	NR_106130	102466843.0		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	49.2	56.22	69.37	49.93	54.58	46.62	55.98	73.4	36.22
Merged-chr8-120745005-1	chr8	120744505	120745505	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 3 of 8)	intron (NM_001301811, intron 3 of 8)	6366.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	103.54	84.32	70.3	123.47	81.64	121.37	119.35	97.72	54.33
Merged-chrX-96316700-2	chrX	96316187	96317187	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172931, intron 8 of 10)	L1_Mus2|LINE|L1	-23249.0	NM_177789	278180.0	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	14.3	19.81	15.72	17.54	7.46	28.13	23.24	14.15	23.11
Merged-chr5-20792353-1	chr5	20791853	20792853	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 8 of 17)	RLTR17|LTR|ERVK	89771.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.58	7.37	12.95	15.52	11.66	18.49	8.45	3.98	1.25
Merged-chr10-80659314-1	chr10	80658814	80659814	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2243.0	NM_145361	208198.0	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	8.01	11.98	16.65	2.7	5.6	4.02	9.51	6.63	6.25
Merged-chr12-103493011-3	chr12	103492517	103493517	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35794.0	NM_145449	217845.0	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	1.72	2.76	1.85	5.4	3.27	4.82	2.11	1.77	1.25
Merged-chr19-7382576-2	chr19	7382061	7383061	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045703)	promoter-TSS (NR_045703)	-442.0	NR_045703	654802.0	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	63.5	60.82	47.17	101.21	79.31	77.16	49.64	49.08	43.09
Merged-chr2-73386011-1	chr2	73385511	73386511	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276444, intron 1 of 15)	intron (NM_001276444, intron 1 of 15)	469.0	NM_001276443	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	14.3	13.82	9.25	16.87	21.93	21.7	24.29	41.12	31.23
Merged-chr17-44831397-1	chr17	44830897	44831897	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178652, intron 2 of 11)	RMER17C|LTR|ERVK	-16600.0	NR_073392	12393.0	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	2.29	1.38	0.0	4.72	4.67	6.43	2.11	2.65	4.37
Merged-chr13-92940806-2	chr13	92940302	92941302	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	96015.0	NM_001162945	382793.0	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	5.72	2.3	0.92	1.35	3.73	0.0	4.22	2.65	2.5
Merged-chr4-75262544-1	chr4	75262044	75263044	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15748.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	8.01	12.44	11.1	6.75	7.93	12.86	9.51	7.07	3.75
Merged-chr10-94992340-3	chr10	94991831	94992831	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47753.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	10.3	2.76	3.7	2.7	7.0	8.04	4.22	3.1	1.25
Merged-chr3-103026399-1	chr3	103025899	103026899	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310693, intron 1 of 17)	B2_Mm2|SINE|B2	5853.0	NM_144901	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	9.15	14.28	21.27	11.47	11.2	16.08	22.18	15.03	6.25
Merged-chr19-45229606-1	chr19	45229106	45230106	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5630.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	8.58	1.84	1.85	4.72	3.27	0.0	3.17	2.21	9.99
Merged-chr1-154058057-2	chr1	154057562	154058562	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143125.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	9.15	4.15	5.55	12.82	3.27	11.25	14.79	3.98	1.25
Merged-chr8-86827390-1	chr8	86826890	86827890	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	57868.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	6.86	5.99	4.62	32.39	22.86	19.29	0.0	2.21	2.5
Merged-chr17-31079397-1	chr17	31078897	31079897	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 2 of 14)	intron (NM_009593, intron 2 of 14)	21703.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	33.75	30.41	34.22	34.41	32.19	34.56	71.82	46.87	21.86
Merged-chr9-44194110-1	chr9	44193610	44194610	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	39936.0	NM_007619	12402.0	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	34.9	63.59	71.22	43.18	39.65	49.03	39.08	30.95	24.36
Merged-chr18-39544388-1	chr18	39543888	39544888	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57143.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.72	6.45	5.55	16.87	4.67	8.04	4.22	3.98	5.0
Merged-chr10-67743086-1	chr10	67742586	67743586	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	169576.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	5.72	5.53	3.7	6.07	2.33	0.8	7.39	2.65	1.25
Merged-chrX-96094772-2	chrX	96094275	96095275	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1270.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	3.43	1.84	2.77	6.07	3.73	1.61	4.22	4.42	3.75
Merged-chr16-38118952-1	chr16	38118452	38119452	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	B3A|SINE|B2	-29692.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	11.44	22.58	5.55	12.82	11.66	9.65	19.01	8.84	9.37
Merged-chr15-100638487-1	chr15	100637987	100638987	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1547.0	NM_001033872	207818.0	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	28.03	37.32	19.42	31.71	29.86	46.62	55.98	38.03	36.22
Merged-chr6-37143212-1	chr6	37142712	37143712	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 2 of 32)	intron (NM_001347104, intron 2 of 32)	156764.0	NM_001081206	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	32.04	45.62	34.22	33.06	26.12	31.35	51.75	73.4	37.47
Merged-chr4-139289071-1	chr4	139288571	139289571	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037761, intron 9 of 9)	intron (NM_001037761, intron 9 of 9)	21637.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	6.29	1.84	5.55	10.8	2.33	8.04	2.11	3.98	2.5
Merged-chr18-3495660-1	chr18	3495160	3496160	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12297.0	NM_026505	68010.0	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	5.72	2.76	0.0	3.37	1.4	5.63	0.0	0.0	3.75
Merged-chr16-39053165-1	chr16	39052665	39053665	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	135785.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.29	3.69	3.7	7.42	5.6	6.43	0.0	0.88	6.25
Merged-chr6-120364714-1	chr6	120364214	120365214	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045558)	promoter-TSS (NR_045558)	-345.0	NR_045558	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	205.37	222.1	124.87	155.19	181.01	108.51	208.07	214.89	93.68
Merged-chr16-12589102-2	chr16	12588595	12589595	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-222295.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	4.58	0.92	0.0	4.05	1.87	1.61	2.11	0.88	1.25
Merged-chr2-79243476-1	chr2	79242976	79243976	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER5A1|DNA|hAT-Charlie	-11950.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	5.72	3.23	7.4	4.05	12.13	7.23	5.28	4.42	4.37
Merged-chr7-139944112-2	chr7	139943568	139944568	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009482, exon 1 of 2)	exon (NM_009482, exon 1 of 2)	212.0	NM_009482	22286.0	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	2.86	0.92	10.17	2.02	1.87	1.61	1.06	2.21	4.37
Merged-chr4-63389452-2	chr4	63388948	63389948	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 4 of 21)	intron (NM_001045514, intron 4 of 21)	8792.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	77.23	62.21	62.9	72.19	43.85	54.66	85.55	71.19	46.84
Merged-chr4-95711514-2	chr4	95711020	95712020	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029347, intron 6 of 10)	intron (NM_029347, intron 6 of 10)	132099.0	NM_029347	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	12.01	12.44	5.55	6.07	6.53	6.43	9.51	6.63	7.49
Merged-chr7-92551112-1	chr7	92550612	92551612	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10037.0	NM_025515	66365.0	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	3.43	2.76	1.85	1.35	6.06	0.0	1.06	7.07	1.25
Merged-chr11-8609379-1	chr11	8608879	8609879	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	intron (NM_001083587, intron 2 of 30)	55156.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	284.88	216.57	138.74	255.72	241.65	166.38	172.16	174.21	89.93
Merged-chr9-110985790-1	chr9	110985290	110986290	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153100, exon 3 of 3)	3' UTR (NM_153100, exon 3 of 3)	-3709.0	NR_152179	791282.0	Mm.406769	NR_152179	ENSMUSG00000057802	Gm10030	-	predicted gene 10030	ncRNA	29.17	27.19	48.1	42.51	10.73	34.56	22.18	15.03	20.61
Merged-chr3-98157757-1	chr3	98157257	98158257	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-2877.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	2.86	2.76	0.92	5.4	2.8	4.02	8.45	3.1	3.75
Merged-chr8-104632128-3	chr8	104631650	104632650	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019662)	promoter-TSS (NM_019662)	-829.0	NM_019662	56437.0	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	28.03	27.19	25.9	25.64	26.59	48.23	30.63	33.6	27.48
Merged-chrX-153635475-1	chrX	153634975	153635975	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60805.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	3.43	3.23	11.1	0.0	4.2	8.84	3.17	2.65	3.75
Merged-chrX-12795034-1	chrX	12794534	12795534	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045852, intron 2 of 4)	MLT1E2|LTR|ERVL-MaLR	32756.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	0.57	0.46	0.0	2.02	4.67	1.61	1.06	1.33	1.25
Merged-chr7-112213113-1	chr7	112212613	112213613	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-12723.0	NM_177282	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	8.01	3.69	8.32	8.1	9.8	13.66	3.17	1.33	8.12
Merged-chr2-174477372-1	chr2	174476872	174477872	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-4431.0	NM_025531	66390.0	Mm.182294	NM_025531	ENSMUSG00000016257	Prelid3b	2310042G06Rik|AA407013|Slmo2	PRELI domain containing 3B	protein-coding	9.15	8.75	13.87	6.07	6.53	9.65	5.28	5.75	8.12
Merged-chr18-79323822-1	chr18	79323322	79324322	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-214431.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	1.14	0.92	1.85	2.7	0.93	4.82	3.17	0.44	3.75
Merged-chr3-51797032-3	chr3	51796541	51797541	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	135862.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	28.03	29.03	25.9	30.36	17.26	21.7	25.35	18.13	21.86
Merged-chr19-53870086-1	chr19	53869586	53870586	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22145.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	2.86	5.99	7.4	9.45	4.67	1.61	4.22	1.33	3.75
Merged-chrX-93586267-1	chrX	93585767	93586767	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008892, intron 16 of 36)	intron (NM_008892, intron 16 of 36)	45888.0	NM_008892	18968.0	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	5.15	8.29	1.85	10.12	5.13	4.82	7.39	5.75	3.12
Merged-chr13-90360154-1	chr13	90359654	90360654	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270487.0	NM_025335	66074.0	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	2.29	4.15	0.0	1.35	5.13	4.02	8.45	7.96	6.25
Merged-chr18-39319429-1	chr18	39318929	39319929	+	673.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 20 of 21)	intron (NM_001361073, intron 20 of 21)	167816.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.15	5.99	1.85	6.75	3.73	4.02	11.62	11.05	13.12
Merged-chr18-69365385-3	chr18	69364974	69365974	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	19314.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.72	3.23	4.62	10.12	7.46	8.84	9.51	3.54	6.25
Merged-chr12-31501434-1	chr12	31500934	31501934	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1818.0	NM_001253848	104836.0	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	8.01	6.45	3.7	2.02	4.2	9.65	6.34	0.44	9.99
Merged-chr10-75486671-1	chr10	75486171	75487171	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30710.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.86	1.84	0.92	3.37	3.73	5.63	0.0	1.33	0.0
Merged-chr1-138517564-1	chr1	138517064	138518064	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 5 of 9)	intron (NM_021605, intron 5 of 9)	102193.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	19.45	31.79	13.87	24.29	20.53	29.74	24.29	19.46	12.49
Merged-chr15-57977041-1	chr15	57976541	57977541	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8862.0	NM_173862	239463.0	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	82.38	94.46	57.35	80.97	82.57	110.92	104.56	124.25	71.82
Merged-chr1-191575055-1	chr1	191574555	191575555	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306203)	promoter-TSS (NM_001306203)	489.0	NM_029766	76843.0	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	97.82	136.39	100.82	76.92	92.84	94.04	84.49	91.09	79.94
Merged-chr8-81341737-2	chr8	81341241	81342241	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001297591)	promoter-TSS (NM_001297591)	-821.0	NM_001024617	234515.0	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	41.19	29.03	45.32	29.69	19.13	12.86	9.51	4.42	5.0
Merged-chr10-96632940-1	chr10	96632440	96633440	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	15939.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	17.73	23.5	35.15	24.29	14.0	19.29	39.08	47.31	23.11
Merged-chr5-67972762-1	chr5	67972262	67973262	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256184, intron 2 of 3)	intron (NM_001256184, intron 2 of 3)	-29681.0	NR_038182	73865.0	Mm.66946	NR_038182	ENSMUSG00000106880	4930425K10Rik	-	RIKEN cDNA 4930425K10 gene	ncRNA	9.72	10.14	2.77	9.45	8.4	15.27	7.39	3.1	2.5
Merged-chr16-24629913-1	chr16	24629413	24630413	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-91942.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	260.86	194.45	101.74	240.2	205.73	154.33	217.57	225.51	103.05
Merged-chr19-55806470-1	chr19	55805970	55806970	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	64660.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	30.89	19.81	28.67	22.94	21.93	16.88	17.96	11.5	13.74
Merged-chr9-37236848-1	chr9	37236348	37237348	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 10 of 18)	intron (NM_001145960, intron 10 of 18)	18890.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	24.6	19.35	39.77	31.71	25.19	45.82	10.56	3.1	11.87
Merged-chr18-65524251-1	chr18	65523751	65524751	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105742, intron 2 of 6)	intron (NR_105742, intron 2 of 6)	-55979.0	NM_207255	328977.0	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	14.3	10.14	5.55	16.19	12.6	15.27	31.69	11.05	8.74
Merged-chr4-126104473-1	chr4	126103973	126104973	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028800, intron 1 of 10)	intron (NM_028800, intron 1 of 10)	516.0	NM_001145827	74178.0	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	278.02	228.09	240.49	219.28	169.81	169.6	189.06	144.59	102.42
Merged-chr8-115070458-2	chr8	115069962	115070962	+	673.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	630810.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	6.29	5.07	3.7	2.7	2.33	4.82	4.22	2.65	5.0
Merged-chr2-51933700-1	chr2	51933200	51934200	+	673.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355607)	promoter-TSS (NM_001355607)	-365.0	NM_001355607	71684.0	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	6.86	11.98	13.87	7.42	11.2	12.86	9.51	16.36	14.36
Merged-chr14-103421458-3	chr14	103420954	103421954	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74654.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	30.32	38.71	29.6	37.78	27.99	16.08	29.57	28.74	19.98
Merged-chr1-192088116-3	chr1	192087569	192088569	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011633, intron 1 of 9)	intron (NM_011633, intron 1 of 9)	4530.0	NM_011633	22033.0	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	36.61	34.1	33.3	22.94	17.26	27.33	22.18	23.43	9.37
Merged-chr11-110473627-3	chr11	110473122	110474122	+	672.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-4893.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	8.01	2.76	0.0	4.72	5.6	8.04	10.56	8.84	2.5
Merged-chr10-78464015-2	chr10	78463510	78464510	+	672.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	938.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	66.93	74.19	30.52	80.97	101.7	48.23	66.54	63.67	22.48
Merged-chr4-46643526-2	chr4	46643010	46644010	+	672.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	6689.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.57	1.84	3.7	0.67	4.67	1.61	7.39	0.88	2.5
Merged-chr1-121136969-2	chr1	121136480	121137480	+	672.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	49575.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	9.72	4.61	9.25	4.05	2.8	4.82	4.22	3.1	0.0
Merged-chr3-19301419-3	chr3	19300911	19301911	+	672.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	B3|SINE|B2	9911.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	12.01	8.75	24.05	10.12	5.6	11.25	11.62	7.96	14.99
Merged-chr9-64806424-3	chr9	64805911	64806911	+	672.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4600.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	10.87	15.21	9.25	16.19	15.86	16.08	12.67	7.07	11.87
Merged-chr2-180117316-2	chr2	180116814	180117814	+	672.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2052.0	NM_144500	228983.0	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	9.15	9.22	1.85	9.45	4.67	11.25	6.34	3.1	3.12
Merged-chr9-3037998-2	chr9	3037497	3038497	+	672.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_039546)	TTS (NR_039546)	746.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	8.58	46.54	5.55	8.77	51.32	3.22	23.24	29.63	8.12
Merged-chr6-108536668-3	chr6	108536181	108537181	+	672.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	46938.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	51.48	26.73	24.97	93.79	28.92	40.99	58.09	29.63	11.24
Merged-chr14-118925452-1	chr14	118924952	118925952	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025943)	promoter-TSS (NM_025943)	18.0	NM_025943	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	6.86	0.46	0.0	4.05	0.93	1.61	3.17	0.0	1.25
Merged-chr16-11323596-3	chr16	11323024	11324024	+	672.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	620.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	70.93	69.58	76.77	77.59	78.37	97.26	83.44	60.13	45.59
Merged-chr7-110816276-1	chr7	110815776	110816776	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025999)	TTS (NM_025999)	28105.0	NM_025999	67150.0	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	5.72	5.53	3.7	5.4	2.33	4.82	5.28	1.77	1.25
Merged-chr17-15724098-1	chr17	15723598	15724598	+	672.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	19131.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	4.58	8.29	0.0	4.05	2.33	3.22	1.06	2.65	6.87
Merged-chr11-4219663-1	chr11	4219163	4220163	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028022, intron 2 of 8)	intron (NM_028022, intron 2 of 8)	1412.0	NM_028022	71962.0	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik|Castor1	GATS protein-like 3	protein-coding	5.15	8.29	7.4	6.07	1.4	1.61	3.17	1.77	0.0
Merged-chr3-38235554-1	chr3	38235054	38236054	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27435.0	NR_040541	71342.0	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.86	1.38	1.85	3.37	3.27	4.02	6.34	1.33	4.37
Merged-chr8-124750292-2	chr8	124749791	124750791	+	672.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	1518.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	17.73	8.29	10.17	8.77	0.93	4.02	0.0	1.33	1.25
Merged-chr6-72155332-2	chr6	72154821	72155821	+	672.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011375)	TTS (NM_011375)	-32124.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	28.03	22.58	27.75	26.99	19.13	20.9	23.24	9.73	23.73
Merged-chr4-3728851-2	chr4	3728376	3729376	+	672.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	13912.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	33.75	22.58	28.67	21.59	20.99	28.13	59.15	39.35	55.58
Merged-chr6-88044485-2	chr6	88043963	88044963	+	672.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	MIR|SINE|MIR	554.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	299.18	318.86	237.71	319.14	310.69	184.87	242.92	283.43	161.13
Merged-chr17-26946747-2	chr17	26946296	26947296	+	672.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281491, intron 3 of 18)	CpG	1323.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	6.86	3.69	5.55	9.45	5.13	11.25	5.28	4.86	6.25
Merged-chr4-152136723-2	chr4	152136215	152137215	+	672.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_207691)	promoter-TSS (NM_207691)	-390.0	NM_207690	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	1.72	0.92	0.92	4.05	0.47	0.0	6.34	4.42	5.0
Merged-chr4-119083007-3	chr4	119082505	119083505	+	672.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13894.0	NR_131914	433751.0	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	-	predicted gene 12866	ncRNA	5.15	4.15	4.62	6.75	9.33	1.61	6.34	5.31	8.74
Merged-chr2-153348588-2	chr2	153348095	153349095	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2456.0	NM_001039939	228790.0	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	36.61	51.61	25.9	46.56	43.39	42.6	57.03	44.66	29.98
Merged-chr6-98234259-1	chr6	98233759	98234759	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	108495.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	6.29	3.69	0.0	4.05	4.67	8.04	2.11	2.21	7.49
Merged-chr8-46861335-2	chr8	46860831	46861831	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	121586.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	12.01	5.53	7.4	4.72	5.6	8.04	4.22	6.19	2.5
Merged-chr11-86591612-2	chr11	86591102	86592102	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 10 of 11)	intron (NM_001356531, intron 10 of 11)	-7444.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	8.01	14.28	15.72	10.8	2.33	8.04	20.07	6.19	13.12
Merged-chr1-97705517-1	chr1	97705017	97706017	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_173760)	TTS (NM_173760)	-43499.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	17.73	12.9	9.25	15.52	11.2	9.65	9.51	8.84	6.25
Merged-chr5-140835733-1	chr5	140835233	140836233	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20C1_MM|LTR|ERVK	-5302.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	3.43	2.3	12.02	9.45	4.2	20.09	7.39	2.21	9.99
Merged-chr13-77049646-1	chr13	77049146	77050146	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 17 of 20)	intron (NM_134071, intron 17 of 20)	85822.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	14.3	19.81	17.57	12.14	18.19	16.88	22.18	16.36	15.61
Merged-chr7-80177620-1	chr7	80177120	80178120	+	672.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-9221.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	6.29	3.69	1.85	2.7	5.6	10.45	5.28	7.07	7.49
Merged-chr2-180709466-1	chr2	180708966	180709966	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289651)	promoter-TSS (NM_001289651)	533.0	NM_177852	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	59.49	62.21	32.37	82.99	52.72	85.2	91.89	72.96	63.08
Merged-chr4-3795286-1	chr4	3794786	3795786	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	40369.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	10.87	4.61	18.5	6.07	1.4	12.86	3.17	6.63	15.61
Merged-chr19-42461209-2	chr19	42460705	42461705	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29417.0	NM_001356589	72832.0	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	21.74	19.81	9.25	29.01	40.59	27.33	22.18	17.24	11.24
Merged-chr7-141476815-2	chr7	141476341	141477341	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252588, intron 1 of 7)	intron (NM_001252588, intron 1 of 7)	461.0	NM_001252588	64540.0	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	167.04	98.61	92.5	176.78	79.31	200.14	193.28	133.53	107.42
Merged-chr14-87486087-1	chr14	87485587	87486587	+	672.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 8 of 11)	intron (NM_001253755, intron 8 of 11)	69504.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.15	4.15	1.85	4.72	9.8	6.43	7.39	7.96	11.24
Merged-chr4-47438155-2	chr4	47437639	47438639	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36228.0	NM_001355496	56737.0	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	11.44	3.23	0.0	5.4	1.4	12.06	2.11	2.21	0.0
Merged-chr5-113120178-1	chr5	113119678	113120678	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172884, intron 1 of 7)	intron (NM_172884, intron 1 of 7)	18407.0	NM_001347397	243219.0	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	3.43	3.69	5.55	2.02	0.47	5.63	2.11	1.33	1.25
Merged-chr5-77217450-2	chr5	77216929	77217929	+	672.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5958.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	4.58	1.84	7.4	2.02	5.6	3.22	3.17	3.98	2.5
Merged-chr8-120725440-1	chr8	120724940	120725940	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10918.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	4.0	3.69	5.55	7.42	9.33	6.43	11.62	3.1	5.0
Merged-chr2-181890172-1	chr2	181889672	181890672	+	672.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	25812.0	NM_025901	67005.0	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	18.31	14.75	5.55	20.92	15.39	21.7	6.34	6.19	6.25
Merged-chr10-20149303-3	chr10	20148755	20149755	+	672.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198635, intron 1 of 17)	CpG	335.0	NM_001198635	17761.0	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	18.31	6.45	5.55	10.8	5.13	1.61	9.51	0.88	3.75
Merged-chr2-153156240-4	chr2	153155660	153156660	+	672.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-5141.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	22.31	17.51	16.65	11.47	3.73	3.22	25.35	12.38	14.99
Merged-chr11-115100644-3	chr11	115100078	115101078	+	672.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	9147.0	NM_001163753	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	19.45	12.9	21.27	8.77	11.2	22.51	12.67	11.94	3.75
Merged-chr9-105393636-2	chr9	105393140	105394140	+	672.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 1 of 15)	intron (NM_172461, intron 1 of 15)	1647.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	5.15	4.15	0.0	4.05	6.53	5.63	6.34	1.77	6.87
Merged-chr4-3786919-2	chr4	3786396	3787396	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 12 of 12)	intron (NM_001111096, intron 12 of 12)	48759.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	10.87	9.22	16.65	10.12	8.86	10.45	9.51	3.54	4.37
Merged-chr9-116086577-2	chr9	116086056	116087056	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88807.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	15.45	22.12	11.1	18.22	10.73	25.72	4.22	5.31	7.49
Merged-chr1-134494120-2	chr1	134493596	134494596	+	672.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145510)	promoter-TSS (NM_145510)	-564.0	NM_145510	98710.0	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	105.26	101.83	46.25	156.53	164.68	124.59	118.29	210.03	94.93
Merged-chr2-155071311-2	chr2	155070791	155071791	+	672.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016661, intron 1 of 9)	L2|LINE|L2	3206.0	NM_016661	269378.0	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	9.15	6.91	3.7	15.52	10.73	22.51	8.45	10.17	6.87
Merged-chr3-51727935-1	chr3	51727435	51728435	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	L3b|LINE|CR1	66756.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	20.59	9.68	14.8	13.49	9.8	11.25	5.28	6.63	2.5
Merged-chr19-15201364-3	chr19	15200873	15201873	+	672.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-603190.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.86	5.53	22.2	8.77	6.53	7.23	7.39	2.65	11.24
Merged-chr5-130163902-1	chr5	130163402	130164402	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-7917.0	NM_001199059	56715.0	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	8.58	3.69	0.0	5.4	5.6	0.0	2.11	0.88	4.37
Merged-chr14-55746651-1	chr14	55746151	55747151	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026819)	promoter-TSS (NM_026819)	958.0	NM_026403	67842.0	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	41.76	43.31	70.3	39.13	31.26	50.64	33.8	45.1	35.6
Merged-chr10-84886533-1	chr10	84886033	84887033	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024918, intron 15 of 17)	intron (NM_001024918, intron 15 of 17)	-31080.0	NM_001013441	237422.0	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	6.29	2.76	0.0	4.05	4.2	3.22	1.06	1.33	6.87
Merged-chr13-100873541-3	chr13	100873071	100874071	+	672.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40144.0	NM_022885	69048.0	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	6.86	5.99	1.85	26.31	20.53	16.88	30.63	28.74	8.74
Merged-chr4-99928771-3	chr4	99928273	99929273	+	672.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028132)	promoter-TSS (NM_028132)	-678.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	39.47	37.32	28.67	47.9	48.52	68.32	28.52	32.72	24.36
Merged-chr14-79519085-1	chr14	79518585	79519585	+	672.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286411, intron 1 of 8)	intron (NM_001286411, intron 1 of 8)	3411.0	NM_001286411	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	156.17	236.38	135.04	161.93	165.14	156.74	204.9	248.06	121.16
Merged-chr3-27631710-2	chr3	27631210	27632210	+	672.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356953, intron 3 of 26)	intron (NM_001356953, intron 3 of 26)	-46715.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	13.73	6.91	9.25	11.47	11.66	15.27	35.91	9.73	13.74
Merged-chr16-32164136-3	chr16	32163629	32164629	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146069, intron 1 of 3)	intron (NM_146069, intron 1 of 3)	1465.0	NM_146069	224109.0	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	127.57	168.19	122.09	112.0	141.82	130.21	158.43	175.54	158.01
Merged-chr5-99324845-3	chr5	99324369	99325369	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-71942.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	200.22	182.01	128.57	172.73	103.1	106.9	102.45	81.8	53.71
Merged-chr15-38633718-3	chr15	38633208	38634208	+	672.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28196.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	2.29	3.23	4.62	2.02	1.87	3.22	11.62	6.63	1.25
Merged-chr13-49248210-2	chr13	49247713	49248713	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360772)	promoter-TSS (NM_001360772)	81.0	NM_001360772	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	6.29	5.99	11.1	8.1	4.2	0.0	5.28	2.21	3.75
Merged-chr17-3149664-2	chr17	3149180	3150180	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134123, intron 3 of 19)	MTC|LTR|ERVL-MaLR	34708.0	NM_134123	106583.0	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	21.74	15.21	24.05	12.82	10.73	11.25	21.12	19.46	16.24
Merged-chr1-151001583-2	chr1	151001089	151002089	+	672.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8154.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	26.31	11.98	12.95	12.14	10.26	14.47	15.84	16.8	7.49
Merged-chr2-30624097-2	chr2	30623602	30624602	+	672.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29058.0	NM_030137	78617.0	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	20.02	23.5	6.47	33.74	29.39	32.15	16.9	21.22	9.99
Merged-chr3-65938359-3	chr3	65937795	65938795	+	672.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19954.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	6.86	5.99	7.4	4.72	3.27	1.61	3.17	3.98	5.0
Merged-chr5-123013769-3	chr5	123013277	123014277	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1297.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	18.31	4.61	12.95	7.42	5.6	4.02	8.45	8.4	14.99
Merged-chr15-78903375-3	chr15	78902874	78903874	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316685, intron 6 of 17)	intron (NM_001316685, intron 6 of 17)	3606.0	NM_009164	20401.0	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	10.87	8.29	20.35	14.17	4.2	8.84	11.62	1.77	6.87
Merged-chr19-11060125-3	chr19	11059607	11060607	+	672.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9541.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	21.74	39.63	45.32	37.11	28.92	40.99	47.53	42.45	23.73
Merged-chr4-45819249-1	chr4	45818749	45819749	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	7578.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	4.0	5.07	5.55	2.02	2.8	6.43	3.17	1.33	2.5
Merged-chr19-27429334-1	chr19	27428834	27429834	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	574.0	NM_177474	52874.0	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	56.06	60.82	50.87	55.33	56.45	74.75	71.82	53.5	39.97
Merged-chr7-118741837-1	chr7	118741337	118742337	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 1 of 30)	intron (NM_027815, intron 1 of 30)	1566.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	20.59	27.19	23.12	38.46	29.39	40.19	64.43	64.56	44.97
Merged-chr6-13870454-1	chr6	13869954	13870954	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001352887, exon 3 of 3)	3' UTR (NM_001352887, exon 3 of 3)	1064.0	NM_001352887	66520.0	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	protein-coding	36.04	52.53	23.12	43.86	31.26	24.11	40.14	44.22	23.73
Merged-chr6-124260755-2	chr6	124260259	124261259	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28975.0	NM_001104642	232367.0	Mm.469872	NM_001104642	ENSMUSG00000072778	Vmn2r27	EG232367	vomeronasal 2, receptor27	protein-coding	5.72	2.76	1.85	0.67	3.73	3.22	2.11	0.0	6.87
Merged-chr15-100228761-1	chr15	100228261	100229261	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007497, intron 1 of 6)	B2_Mm2|SINE|B2	902.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	160.75	132.25	125.79	151.81	163.74	108.51	154.2	143.26	101.8
Merged-chr7-101628606-1	chr7	101628106	101629106	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35162.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	2.29	8.29	1.85	8.77	7.46	6.43	4.22	7.52	5.0
Merged-chr1-77740620-2	chr1	77740083	77741083	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-225495.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	4.58	5.07	3.7	5.4	4.2	4.02	12.67	4.42	6.25
Merged-chr19-55286259-2	chr19	55285746	55286746	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027976, intron 12 of 21)	intron (NM_027976, intron 12 of 21)	29790.0	NM_001360595	66980.0	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369|DHHC-6	zinc finger, DHHC domain containing 6	protein-coding	3.43	2.3	5.55	5.4	3.27	9.65	10.56	7.07	9.99
Merged-chr6-61138606-1	chr6	61138106	61139106	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41719.0	NM_001164316	232035.0	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	9.72	1.84	3.7	2.02	6.06	1.61	4.22	1.77	1.87
Merged-chr2-16155467-1	chr2	16154967	16155967	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 35 of 38)	L1_Mus4|LINE|L1	-200837.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	12.01	6.91	7.4	6.07	8.86	3.22	6.34	2.65	3.75
Merged-chr17-33931650-2	chr17	33931139	33932139	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009059, intron 2 of 17)	intron (NM_009059, intron 2 of 17)	1745.0	NM_009059	19732.0	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	45.76	23.96	18.5	33.06	26.12	52.25	59.15	46.43	41.84
Merged-chr7-24850402-1	chr7	24849902	24850902	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19289.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	10.87	9.22	10.17	12.14	15.39	8.04	13.73	11.5	4.37
Merged-chr19-23140270-3	chr19	23139756	23140756	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010638)	promoter-TSS (NM_010638)	-970.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	73.22	88.47	77.7	66.12	94.7	92.44	120.41	133.53	75.57
Merged-chr17-34170968-1	chr17	34170468	34171468	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16362.0	NM_013585	16912.0	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	17.16	13.36	8.32	10.8	9.33	2.41	17.96	16.36	13.74
Merged-chr4-148449126-2	chr4	148448612	148449612	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020009, intron 1 of 57)	intron (NM_020009, intron 1 of 57)	530.0	NM_020009	56717.0	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin kinase	protein-coding	73.79	77.41	85.1	82.99	69.51	69.93	109.84	103.91	41.84
Merged-chr9-100497283-1	chr9	100496783	100497783	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001324530, exon 2 of 3)	exon (NM_001324530, exon 2 of 3)	9573.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	4.58	12.9	14.8	13.49	8.4	11.25	12.67	8.4	11.24
Merged-chr2-50112599-1	chr2	50112099	50113099	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177139, intron 1 of 4)	intron (NM_177139, intron 1 of 4)	46170.0	NM_177139	320343.0	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	1.14	1.84	1.85	0.67	3.27	3.22	2.11	0.44	7.49
Merged-chr3-8098469-1	chr3	8097969	8098969	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143582.0	NR_040587	75476.0	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	13.73	15.21	22.2	11.47	13.53	16.08	8.45	12.82	3.75
Merged-chr18-60802066-2	chr18	60801572	60802572	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR30|LTR|ERV1	-1777.0	NM_001042605	16149.0	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	19.45	18.89	7.4	4.72	3.27	0.0	7.39	8.84	3.75
Merged-chr4-133753350-2	chr4	133752849	133753849	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080819, exon 1 of 20)	exon (NM_001080819, exon 1 of 20)	262.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	225.96	170.95	209.04	184.2	112.43	181.66	159.48	87.55	138.65
Merged-chr15-11987587-1	chr15	11987087	11988087	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011294, intron 3 of 4)	ORR1B1|LTR|ERVL-MaLR	8420.0	NM_011294	20024.0	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	46.91	43.31	37.0	1.35	1.87	14.47	4.22	5.75	0.0
Merged-chrX-85873963-2	chrX	85873463	85874463	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	3690.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	56.63	74.19	29.6	41.16	31.26	25.72	65.48	76.49	30.6
Merged-chr14-120367112-1	chr14	120366612	120367612	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	60660.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	1.72	5.07	1.85	6.75	5.6	1.61	3.17	4.86	2.5
Merged-chr10-80824371-1	chr10	80823871	80824871	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	151.02	177.4	142.44	104.58	118.03	150.31	179.55	217.1	112.42
Merged-chr18-66041355-2	chr18	66040837	66041837	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38702.0	NM_001172062	70361.0	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	5.72	2.3	3.7	3.37	0.93	0.0	3.17	1.77	5.0
Merged-chr6-29243293-1	chr6	29242793	29243793	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26929.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	6.29	7.37	7.4	10.12	5.13	3.22	5.28	1.77	6.87
Merged-chr11-103016318-1	chr11	103015818	103016818	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026551, intron 1 of 4)	intron (NM_026551, intron 1 of 4)	829.0	NM_026551	68087.0	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	25.74	30.87	16.65	26.99	41.05	30.54	46.47	50.85	10.62
Merged-chr6-47471900-1	chr6	47471400	47472400	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355550, intron 1 of 21)	MTEa-int|LTR|ERVL-MaLR	17143.0	NM_001355550	26965.0	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	5.15	7.83	12.95	6.07	10.26	9.65	9.51	5.75	6.25
Merged-chr9-57440811-2	chr9	57440313	57441313	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357914)	promoter-TSS (NM_001357914)	-699.0	NM_001357916	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	29.17	22.12	24.97	19.57	20.99	29.74	19.01	30.95	29.98
Merged-chr4-134589191-1	chr4	134588691	134589691	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-21340.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	2.29	1.84	0.0	12.82	3.73	4.82	6.34	3.98	12.49
Merged-chr8-83875401-1	chr8	83874901	83875901	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24697.0	NM_181039	330814.0	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	10.3	1.84	0.0	1.35	1.4	6.43	2.11	2.21	5.0
Merged-chr16-85151052-1	chr16	85150552	85151552	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198825, intron 1 of 15)	intron (NM_001198825, intron 1 of 15)	22655.0	NM_001198825	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	46.91	50.69	37.0	38.46	35.45	17.68	13.73	6.19	13.74
Merged-chr18-32172232-1	chr18	32171732	32172732	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	9143.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	22.88	24.42	26.82	27.66	21.46	28.94	28.52	24.32	23.73
Merged-chr12-55480769-1	chr12	55480269	55481269	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11878.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	2.86	3.69	0.0	7.42	1.4	2.41	2.11	0.88	1.25
Merged-chrY-90803111-1	chrY	90802611	90803611	+	672.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	17669.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	4.58	1.84	5.55	0.0	1.4	3.22	3.17	8.84	31.85
Merged-chr3-54357801-2	chr3	54357316	54358316	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-3291.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	17.73	28.57	20.35	16.87	11.66	12.06	21.12	13.27	19.36
Merged-chr15-75747221-1	chr15	75746721	75747721	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_194350, exon 1 of 1)	exon (NM_194350, exon 1 of 1)	701.0	NM_194350	378435.0	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	4.0	0.46	3.7	0.0	0.0	0.0	0.0	0.0	0.0
Merged-chr12-14056326-1	chr12	14055826	14056826	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95712.0	NM_029007	105005.0	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	2.29	1.38	5.55	3.37	4.2	4.82	4.22	6.19	3.75
Merged-chr18-62922333-1	chr18	62921833	62922833	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133237)	promoter-TSS (NM_133237)	6.0	NM_133237	494504.0	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.57	0.46	0.0	2.7	0.93	3.22	1.06	0.44	0.0
Merged-chr2-152816449-1	chr2	152815949	152816949	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	12040.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	6.29	10.14	12.95	10.8	9.33	4.02	7.39	1.33	1.87
Merged-chr13-43173412-3	chr13	43172905	43173905	+	672.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1904.0	NM_001252640	67046.0	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	3.43	1.84	7.4	5.4	3.27	4.82	4.22	1.33	5.0
Merged-chr3-33308466-1	chr3	33307966	33308966	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165275.0	NM_001163516	58869.0	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	2.86	3.23	5.55	1.35	3.27	0.0	3.17	5.31	1.25
Merged-chr3-116333433-1	chr3	116332933	116333933	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001173553, intron 5 of 13)	intron (NM_001173553, intron 5 of 13)	20811.0	NM_001355646	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	1.14	3.23	0.0	4.05	2.8	2.41	4.22	5.31	6.25
Merged-chr6-99007708-1	chr6	99007208	99008208	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 7 of 17)	intron (NM_001197321, intron 7 of 17)	20590.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.43	0.92	4.62	4.72	0.47	0.0	2.11	1.33	3.75
Merged-chr1-46908722-1	chr1	46908222	46909222	+	672.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	intron (NM_001356417, intron 1 of 10)	17054.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	21.17	13.82	35.15	13.49	9.8	16.08	9.51	8.84	11.24
Merged-chr1-93174568-3	chr1	93174054	93175054	+	671.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310428, intron 1 of 31)	intron (NM_001310428, intron 1 of 31)	6131.0	NM_001310428	381284.0	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	7.44	1.38	0.0	2.7	3.27	0.0	3.17	2.65	1.87
Merged-chr16-8739755-2	chr16	8739267	8740267	+	671.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1425.0	NM_001003918	252870.0	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	11.44	11.52	13.87	10.12	11.2	28.94	16.9	10.17	2.5
Merged-chr4-107921447-2	chr4	107920922	107921922	+	671.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009949, intron 1 of 4)	intron (NM_009949, intron 1 of 4)	2167.0	NM_009949	12896.0	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	30.89	20.27	9.25	34.41	27.99	7.23	21.12	19.46	10.62
Merged-chr11-107326384-2	chr11	107325896	107326896	+	671.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-137015.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	86.38	72.8	40.7	130.22	73.71	36.97	60.2	55.27	18.11
Merged-chr5-120578881-2	chr5	120578380	120579380	+	671.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 2 of 27)	intron (NM_145853, intron 2 of 27)	9733.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	14.3	7.83	5.55	12.82	9.33	8.04	11.62	1.77	5.62
Merged-chr6-124717559-3	chr6	124717052	124718052	+	671.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029554)	TTS (NR_029554)	433.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	26.89	27.19	26.82	31.04	15.39	30.54	24.29	18.13	28.1
Merged-chr4-49688777-2	chr4	49688288	49689288	+	671.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-6805.0	NM_001004025	19059.0	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	1.14	0.46	3.7	5.4	2.33	3.22	4.22	1.33	2.5
Merged-chr10-8864046-2	chr10	8863546	8864546	+	671.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	22024.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	12.59	9.22	12.95	12.82	9.8	12.06	14.79	7.96	16.24
Merged-chr7-135520397-2	chr7	135519906	135520906	+	671.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	8248.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	4.0	1.38	1.85	8.1	4.2	12.86	3.17	0.44	3.75
Merged-chr11-77216836-1	chr11	77216336	77217336	+	671.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	intron (NM_177710, intron 1 of 14)	411.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	23.45	8.29	14.8	22.94	16.33	13.66	22.18	20.34	13.74
Merged-chr4-122922978-3	chr4	122922449	122923449	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36873.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	10.87	15.67	26.82	14.17	13.06	20.09	12.67	7.96	8.12
Merged-chr14-73507838-3	chr14	73507364	73508364	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2185.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	16.02	9.22	11.1	18.22	15.39	12.06	15.84	15.03	14.99
Merged-chr18-9507276-3	chr18	9506762	9507762	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57108.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	14.3	9.22	0.92	13.49	13.06	6.43	32.74	19.01	2.5
Merged-chr5-103719348-3	chr5	103718845	103719845	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34817.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	14.87	18.89	12.95	12.14	14.0	4.82	27.46	22.11	13.12
Merged-chr10-43846369-3	chr10	43845866	43846866	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20459.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	5.15	1.84	9.25	2.7	1.4	4.82	2.11	1.77	7.49
Merged-chr7-83482818-3	chr7	83482314	83483314	+	671.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102117.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	11.44	11.52	1.85	4.05	5.13	12.06	6.34	6.63	6.25
Merged-chr2-156841925-2	chr2	156841435	156842435	+	671.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291124, intron 1 of 3)	intron (NM_001291124, intron 1 of 3)	1928.0	NM_173396	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	15.45	3.23	11.1	8.77	3.73	6.43	16.9	4.42	1.25
Merged-chr4-136454939-2	chr4	136454433	136455433	+	671.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14828.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	17.73	31.33	10.17	33.06	28.46	25.72	9.51	11.94	7.49
Merged-chr4-86689679-4	chr4	86689181	86690181	+	671.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19622.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	216.81	177.4	109.14	259.09	268.24	166.38	88.72	77.82	81.81
Merged-chr11-115010434-3	chr11	115009885	115010885	+	671.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8505.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.86	4.15	6.47	4.05	3.73	0.8	7.39	2.65	2.5
Merged-chr2-132048340-1	chr2	132047840	132048840	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-18352.0	NM_175445	215653.0	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	4.0	3.23	1.85	11.47	4.67	1.61	3.17	9.29	5.0
Merged-chr6-89300019-2	chr6	89299484	89300484	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14259.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	9.72	8.29	7.4	7.42	6.06	9.65	3.17	2.21	3.75
Merged-chr14-61301500-2	chr14	61301003	61302003	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033788, intron 1 of 2)	RMER4B|LTR|ERVK	3831.0	NR_033788	67355.0	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	2.29	4.61	1.85	6.75	3.27	0.0	10.56	0.44	0.0
Merged-chr13-23427071-1	chr13	23426571	23427571	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_015492)	TTS (NR_015492)	-3205.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	4.58	5.07	4.62	4.72	4.2	4.82	4.22	1.33	0.0
Merged-chr5-92690788-1	chr5	92690288	92691288	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	7353.0	NM_015756	27428.0	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	2.29	2.76	0.0	2.7	2.8	2.41	4.22	2.65	3.75
Merged-chr17-65906602-1	chr17	65906102	65907102	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20847.0	NM_009067	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	12.01	7.83	8.32	9.45	15.86	16.88	12.67	8.84	9.99
Merged-chr13-60684278-1	chr13	60683778	60684778	+	671.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	82067.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	72.65	50.69	86.02	76.24	34.52	110.12	116.18	119.39	61.2
Merged-chr6-128334580-1	chr6	128334080	128335080	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011657, exon 3 of 11)	exon (NM_011657, exon 3 of 11)	21271.0	NM_011657	22158.0	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	4.58	1.38	0.0	4.72	3.27	3.22	4.22	1.77	0.0
Merged-chr5-33005620-2	chr5	33005136	33006136	+	671.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13180.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	26.89	22.12	37.0	26.99	19.13	32.15	8.45	10.61	19.98
Merged-chr10-127343266-2	chr10	127342751	127343751	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1672.0	NM_010296	14632.0	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	1.72	5.07	3.7	7.42	5.13	4.82	4.22	1.77	1.25
Merged-chr17-48320438-1	chr17	48319938	48320938	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4276.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	29.17	47.0	58.27	27.66	24.26	57.87	43.3	45.1	45.59
Merged-chr6-65142876-1	chr6	65142376	65143376	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	intron (NM_019455, intron 1 of 5)	1854.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	63.5	95.84	42.55	70.85	76.51	40.99	46.47	73.84	28.73
Merged-chr12-25326104-1	chr12	25325604	25326604	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	196930.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.43	5.99	7.4	5.4	3.27	1.61	9.51	6.19	7.49
Merged-chr16-94599497-2	chr16	94599011	94600011	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113389, intron 1 of 11)	intron (NM_001113389, intron 1 of 11)	-11908.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	61.78	60.36	37.0	62.75	34.06	62.7	54.92	54.39	16.24
Merged-chr8-126597754-2	chr8	126597255	126598255	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4319.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	17.16	10.6	18.5	25.64	4.2	11.25	22.18	17.69	13.74
Merged-chr1-191272884-1	chr1	191272384	191273384	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	45234.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	9.72	5.53	1.85	8.1	4.67	3.22	3.17	4.42	5.0
Merged-chr7-75365690-1	chr7	75365190	75366190	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56428.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.0	1.84	1.85	1.35	2.8	4.82	1.06	1.33	1.25
Merged-chr5-28311069-1	chr5	28310569	28311569	+	671.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-6120.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.0	2.3	0.0	4.72	1.4	4.82	22.18	19.46	16.24
Merged-chr1-133034376-1	chr1	133033876	133034876	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-3789.0	NM_001302802	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	18.88	32.25	6.47	31.71	28.46	36.17	13.73	12.38	8.74
Merged-chr9-60813670-1	chr9	60813170	60814170	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	19228.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	5.15	1.38	3.7	8.77	6.06	0.0	2.11	2.65	3.12
Merged-chr10-77371939-1	chr10	77371439	77372439	+	671.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024838, intron 1 of 11)	intron (NM_001024838, intron 1 of 11)	46334.0	NM_130895	110532.0	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	6.86	3.69	1.85	2.7	4.67	0.8	1.06	0.88	2.5
Merged-chr7-74662154-2	chr7	74661662	74662662	+	671.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107382.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	1.14	2.76	9.25	4.05	2.33	6.43	1.06	5.31	5.0
Merged-chr5-66190564-3	chr5	66190062	66191062	+	671.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040695, intron 1 of 2)	intron (NR_040695, intron 1 of 2)	773.0	NR_040695	73639.0	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	1.72	3.23	1.85	4.72	1.87	3.22	2.11	3.1	6.87
Merged-chr2-76677065-1	chr2	76676565	76677565	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031256, intron 1 of 7)	intron (NM_031256, intron 1 of 7)	1750.0	NM_031256	83435.0	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	6.86	10.6	15.72	11.47	10.26	11.25	12.67	9.73	14.99
Merged-chr15-97248487-1	chr15	97247987	97248987	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172293, intron 1 of 5)	intron (NM_172293, intron 1 of 5)	-1200.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	54.92	48.38	40.7	55.33	54.11	49.03	65.48	58.37	24.98
Merged-chr7-45562379-1	chr7	45561879	45562879	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025330, intron 5 of 8)	intron (NM_025330, intron 5 of 8)	7451.0	NM_025330	66065.0	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	9.15	6.45	12.95	5.4	3.73	20.9	4.22	1.77	2.5
Merged-chr1-170305194-1	chr1	170304694	170305694	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198955, intron 1 of 2)	intron (NM_001198955, intron 1 of 2)	1138.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	6.86	6.45	5.55	11.47	9.33	8.04	0.0	2.65	9.99
Merged-chr18-16252150-1	chr18	16251650	16252650	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534104.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	9.72	9.22	9.25	4.72	9.33	12.86	10.56	9.73	11.87
Merged-chr4-83289421-1	chr4	83288921	83289921	+	671.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	intron (NM_027238, intron 2 of 19)	34768.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	4.0	4.15	5.55	1.35	3.73	4.82	4.22	1.77	3.12
Merged-chr18-80712489-3	chr18	80712000	80713000	+	671.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	CpG	571.0	NM_001164109	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	16.59	12.9	9.25	14.17	7.0	9.65	12.67	7.07	8.74
Merged-chr9-43034481-2	chr9	43033992	43034992	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359232, intron 4 of 40)	intron (NM_001359232, intron 4 of 40)	71226.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.0	5.07	6.47	6.07	7.0	15.27	6.34	3.1	5.62
Merged-chr5-99224804-2	chr5	99224393	99225393	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	28034.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	20.02	12.9	11.1	14.84	8.86	19.29	10.56	12.38	12.49
Merged-chr3-152404988-2	chr3	152404486	152405486	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287139, intron 1 of 13)	intron (NM_001287139, intron 1 of 13)	8302.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	22.31	26.73	13.87	29.69	16.33	20.9	16.9	11.05	11.24
Merged-chr6-148246727-2	chr6	148246259	148247259	+	671.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001347518, exon 15 of 19)	exon (NM_001347518, exon 15 of 19)	-34385.0	NM_001286560	67456.0	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	3.43	3.23	6.47	5.4	1.87	4.82	3.17	1.33	1.25
Merged-chr2-38451184-2	chr2	38450681	38451681	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60516.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.72	5.53	1.85	4.72	3.27	10.45	1.06	1.77	3.75
Merged-chr2-128123456-2	chr2	128122951	128123951	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2587.0	NM_207681	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	9.15	0.92	6.47	14.17	4.67	14.47	4.22	3.54	6.25
Merged-chr17-71448763-2	chr17	71448266	71449266	+	671.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028887, exon 6 of 48)	exon (NM_028887, exon 6 of 48)	26577.0	NM_028887	74355.0	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	30.89	53.45	55.5	30.36	42.92	45.01	64.43	92.41	33.72
Merged-chr3-51788970-3	chr3	51788490	51789490	+	671.246033	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	127811.0	NM_001310482	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	20.59	26.73	32.37	35.09	35.92	56.27	15.84	30.51	16.24
Merged-chr16-33668468-3	chr16	33667978	33668978	+	671.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15988.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	16.02	18.43	20.35	17.54	20.06	23.31	21.12	24.76	29.35
Merged-chr8-105504809-1	chr8	105504309	105505309	+	671.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7907.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	5.72	10.14	5.55	8.77	10.73	25.72	12.67	5.31	12.49
Merged-chr15-6238398-2	chr15	6237883	6238883	+	671.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61406.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.72	1.84	1.85	5.4	2.8	0.8	1.06	0.44	0.0
Merged-chr5-123142273-2	chr5	123141779	123142779	+	671.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040398)	promoter-TSS (NM_001040398)	86.0	NM_001040398	208043.0	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	67.5	36.4	105.44	45.21	26.59	75.56	68.65	65.44	80.56
Merged-chr18-46577661-3	chr18	46577170	46578170	+	671.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4a2|LINE|L1	-3137.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	18.31	14.28	5.55	16.87	9.33	11.25	8.45	5.75	15.61
Merged-chr10-21937505-2	chr10	21937018	21938018	+	671.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161845, intron 2 of 13)	intron (NM_001161845, intron 2 of 13)	-41154.0	NM_001161847	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	8.01	7.37	1.85	23.62	13.53	9.65	47.53	47.75	12.49
Merged-chr7-44384114-3	chr7	44383617	44384617	+	671.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001114116)	promoter-TSS (NM_001114116)	-9.0	NM_001114116	20981.0	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	6.86	12.9	12.02	11.47	7.46	26.53	9.51	2.21	13.74
Merged-chr4-53395073-1	chr4	53394573	53395573	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45340.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.15	4.15	2.77	1.35	4.2	0.0	5.28	2.21	2.5
Merged-chr10-95229627-1	chr10	95229127	95230127	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	-83802.0	NR_131146	628062.0		NR_131146	ENSMUSG00000112481	Gm29684	-	predicted gene, 29684	ncRNA	17.73	11.98	20.35	12.14	16.79	23.31	11.62	15.92	12.49
Merged-chr14-93651201-1	chr14	93650701	93651701	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	239468.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.72	5.07	7.4	3.37	4.67	6.43	12.67	10.17	1.25
Merged-chr10-59252133-1	chr10	59251633	59252633	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30211.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	12.01	11.52	9.25	15.52	13.06	16.08	8.45	5.31	8.74
Merged-chr4-154906318-1	chr4	154905818	154906818	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-7275.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	1.72	9.22	6.47	5.4	7.93	6.43	13.73	6.19	13.74
Merged-chr11-121041434-2	chr11	121040948	121041948	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1970.0	NM_009854	12516.0	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	1.14	3.23	0.0	2.7	2.8	0.0	6.34	1.33	2.5
Merged-chrX-159237457-1	chrX	159236957	159237957	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18325.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	11.44	5.99	0.0	6.75	5.13	2.41	3.17	0.0	5.0
Merged-chr15-77801366-2	chr15	77800872	77801872	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	40803.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	85.81	114.27	116.54	87.04	113.36	81.18	116.18	100.37	114.91
Merged-chr18-10029153-1	chr18	10028653	10029653	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038589, intron 1 of 14)	intron (NM_001038589, intron 1 of 14)	660.0	NM_001360884	59025.0	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	85.24	117.04	70.3	98.51	111.96	81.99	100.34	138.84	50.59
Merged-chr10-62557939-1	chr10	62557439	62558439	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028197)	TTS (NM_028197)	20518.0	NM_028197	72320.0	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	12.59	12.44	6.47	14.17	5.13	8.04	7.39	7.07	16.86
Merged-chr8-40861819-1	chr8	40861319	40862319	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001044740)	promoter-TSS (NM_001044740)	-548.0	NM_007514	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	5.15	0.46	1.85	2.02	0.93	0.0	28.52	29.18	14.99
Merged-chr4-41558702-1	chr4	41558202	41559202	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	L3|LINE|CR1	10825.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.72	4.15	7.4	2.02	0.93	0.0	11.62	5.75	3.75
Merged-chr9-61511548-1	chr9	61511048	61512048	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139182.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.0	3.69	0.0	7.42	1.87	4.82	7.39	1.77	3.75
Merged-chr5-21452034-1	chr5	21451534	21452534	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177869, intron 5 of 7)	intron (NM_177869, intron 5 of 7)	27131.0	NM_177869	330050.0	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	5.15	8.29	0.0	3.37	1.87	3.22	7.39	3.54	1.87
Merged-chr11-46815498-1	chr11	46814998	46815998	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178759, exon 2 of 9)	exon (NM_178759, exon 2 of 9)	4699.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	29.75	34.56	29.6	27.66	21.93	59.48	85.55	47.31	40.59
Merged-chr12-3698989-1	chr12	3698489	3699489	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	ORR1D1|LTR|ERVL-MaLR	-107991.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	18.31	30.41	26.82	19.57	21.93	36.17	51.75	40.24	24.36
Merged-chr10-117375330-2	chr10	117374834	117375834	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	B1_Mur4|SINE|Alu	1639.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	102.4	138.7	82.32	91.76	80.24	62.7	119.35	171.12	83.69
Merged-chr19-17350624-2	chr19	17350115	17351115	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	intron (NM_010265, intron 1 of 2)	6052.0	NM_173442	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	21.17	20.27	14.8	20.24	5.6	18.49	7.39	2.21	11.87
Merged-chr6-47650280-1	chr6	47649780	47650780	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4814.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	32.04	11.06	15.72	35.09	7.0	14.47	6.34	4.86	1.25
Merged-chr14-55758667-3	chr14	55758142	55759142	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009894)	promoter-TSS (NM_009894)	-218.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	17.73	10.14	12.95	17.54	5.13	4.82	13.73	14.59	7.49
Merged-chr4-86712775-1	chr4	86712275	86713275	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35780.0	NM_184088	329877.0	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	6.29	2.3	0.0	4.05	3.73	12.06	1.06	2.21	1.25
Merged-chr2-4620314-1	chr2	4619814	4620814	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31821.0	NM_026045	67229.0	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	1.72	3.69	1.85	6.75	0.93	6.43	7.39	4.86	6.25
Merged-chr1-92799776-1	chr1	92799276	92800276	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31869.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	5.15	1.84	5.55	7.42	7.93	5.63	1.06	3.98	3.75
Merged-chr7-114015538-1	chr7	114015038	114016038	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145584, intron 6 of 15)	intron (NM_145584, intron 6 of 15)	102243.0	NM_025846	66922.0	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	3.43	5.07	1.85	4.72	0.93	4.82	4.22	8.84	2.5
Merged-chr3-104793533-1	chr3	104793033	104794033	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007484, intron 4 of 4)	URR1A|DNA|hAT-Charlie	4499.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	24.03	13.82	37.0	24.96	14.93	35.37	22.18	11.05	20.61
Merged-chr4-6366924-2	chr4	6366413	6367413	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	1233.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	315.77	446.96	199.79	300.25	394.67	242.74	359.1	521.76	221.71
Merged-chr13-92334703-1	chr13	92334203	92335203	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311120, intron 8 of 23)	intron (NM_001311120, intron 8 of 23)	-20080.0	NM_010049	13361.0	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	1.72	3.23	3.7	4.05	8.4	12.06	3.17	2.65	1.25
Merged-chr16-57216618-1	chr16	57216118	57217118	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	14848.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	133.86	108.28	69.37	93.79	64.84	86.81	118.29	154.32	78.07
Merged-chr11-120342779-1	chr11	120342279	120343279	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	4634.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	5.72	5.53	5.55	5.4	1.4	1.61	6.34	3.54	11.24
Merged-chr10-77032704-1	chr10	77032204	77033204	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001199271)	promoter-TSS (NM_001199271)	-35.0	NM_001199271	20509.0	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	13.16	10.6	4.62	18.22	11.2	16.08	19.01	12.82	6.25
Merged-chr13-67609229-1	chr13	67608729	67609729	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163246, intron 1 of 3)	intron (NM_001163246, intron 1 of 3)	478.0	NM_001163246	100416706.0	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	9.15	11.06	3.7	6.75	14.93	3.22	140.47	127.34	47.46
Merged-chr13-60668154-1	chr13	60667654	60668654	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	MLT1J|LTR|ERVL-MaLR	65943.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	29.75	46.54	39.77	31.71	38.72	36.97	25.35	27.41	28.73
Merged-chr1-153802677-2	chr1	153802197	153803197	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 13 of 20)	intron (NM_001243223, intron 13 of 20)	41444.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	82.38	79.25	46.25	66.12	49.45	38.58	27.46	20.34	6.87
Merged-chr16-64748435-1	chr16	64747935	64748935	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22504.0	NM_026273	67609.0	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	4.0	3.23	5.55	4.72	2.8	0.0	5.28	1.33	2.5
Merged-chr4-55335176-1	chr4	55334676	55335676	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-14866.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	7.44	5.07	5.55	0.67	3.73	1.61	2.11	1.77	5.0
Merged-chr1-91347044-1	chr1	91346544	91347544	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033292, exon 9 of 9)	3' UTR (NM_001033292, exon 9 of 9)	-4029.0	NM_027551	70788.0	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	2.86	3.69	0.0	0.67	2.33	0.0	0.0	0.88	3.75
Merged-chr5-66138225-1	chr5	66137725	66138725	+	671.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	12753.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	40.04	41.93	29.6	69.5	48.05	36.97	104.56	104.79	54.33
Merged-chr13-63278293-1	chr13	63277793	63278793	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	18854.0	NR_045794	100504114.0	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	34.32	55.75	32.37	60.72	79.31	39.39	36.97	40.24	16.24
Merged-chr16-50415478-1	chr16	50414978	50415978	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	16911.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	5.72	7.83	1.85	12.82	8.86	4.82	2.11	7.07	1.25
Merged-chr3-152464419-1	chr3	152463919	152464919	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081277, intron 13 of 13)	L1MC2|LINE|L1	67735.0	NM_001287139	108946.0	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	3.43	1.38	5.55	5.4	3.73	3.22	1.06	1.33	3.12
Merged-chr3-159528641-1	chr3	159528141	159529141	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029523, intron 11 of 11)	intron (NM_029523, intron 11 of 11)	33208.0	NM_001172092	76131.0	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	5.72	10.14	0.0	11.47	10.26	3.22	8.45	26.53	14.36
Merged-chr13-5872926-1	chr13	5872426	5873426	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11437.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	8.58	5.53	1.85	7.42	7.46	8.84	3.17	0.88	2.5
Merged-chr2-165873947-2	chr2	165873444	165874444	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252587, intron 2 of 11)	intron (NM_001252587, intron 2 of 11)	4493.0	NM_001291158	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	23.45	22.12	27.75	29.69	10.26	22.51	21.12	19.9	24.36
Merged-chr6-87513575-3	chr6	87513063	87514063	+	671.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-17236.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	18.31	13.36	18.5	8.1	7.46	9.65	23.24	19.46	17.49
Merged-chr8-25362872-1	chr8	25362372	25363372	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56602.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	3.43	3.69	0.0	3.37	1.4	4.82	0.0	1.77	9.37
Merged-chr1-60096725-1	chr1	60096225	60097225	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021312, intron 1 of 12)	MTD|LTR|ERVL-MaLR	1182.0	NM_021312	57750.0	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	8.58	7.83	8.32	11.47	7.46	16.88	17.96	14.15	12.49
Merged-chrX-137019479-1	chrX	137018979	137019979	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 4 of 6)	intron (NM_001082412, intron 4 of 6)	18823.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	6.86	5.99	1.85	4.72	0.93	0.0	1.06	3.1	1.25
Merged-chr18-27022087-2	chr18	27021596	27022596	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267939.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.15	8.75	9.25	12.14	7.0	11.25	13.73	11.5	8.12
Merged-chr19-47901970-1	chr19	47901470	47902470	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001738, intron 1 of 1)	intron (NM_001001738, intron 1 of 1)	17329.0	NM_001001738	414801.0	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	2.86	4.15	1.85	4.72	0.93	9.65	5.28	1.77	2.5
Merged-chr18-82861910-1	chr18	82861410	82862410	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	6013.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	28.03	18.43	9.25	21.59	14.0	19.29	16.9	15.92	14.99
Merged-chr9-119266192-1	chr9	119265692	119266692	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34500.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	29.75	36.86	46.25	36.43	27.99	49.83	33.8	26.97	35.6
Merged-chrX-129777494-1	chrX	129776994	129777994	+	671.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	HAL1|LINE|L1	27752.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	6.29	4.15	5.55	6.75	5.6	1.61	6.34	2.65	6.25
Merged-chr18-65416464-3	chr18	65415953	65416953	+	670.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_105742, intron 3 of 6)	X7A_LINE|LINE|CR1	-14544.0	NM_172833	240354.0	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	4.0	3.23	3.7	5.4	4.2	1.61	1.06	4.42	3.75
Merged-chr2-93642760-3	chr2	93642254	93643254	+	670.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007442, exon 1 of 4)	exon (NM_007442, exon 1 of 4)	320.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.29	0.0	0.0	4.05	1.4	1.61	0.0	0.44	0.0
Merged-chr8-40449396-2	chr8	40448901	40449901	+	670.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357249, intron 3 of 12)	intron (NM_001357249, intron 3 of 12)	25586.0	NM_001357249	70546.0	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik|DHHC-2	zinc finger, DHHC domain containing 2	protein-coding	6.29	1.38	7.4	6.07	5.6	3.22	5.28	3.1	2.5
Merged-chr15-97789180-3	chr15	97788666	97789666	+	670.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 1 of 2)	intron (NM_026353, intron 1 of 2)	4801.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	31.46	35.48	43.47	35.76	27.99	41.8	29.57	26.09	25.61
Merged-chr6-124481736-2	chr6	124481232	124482232	+	670.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11381.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	1.14	1.38	1.85	0.67	0.93	1.61	3.17	3.98	2.5
Merged-chr4-105226439-3	chr4	105225947	105226947	+	670.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080555, intron 5 of 5)	intron (NM_080555, intron 5 of 5)	69100.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	65.79	67.74	37.0	50.6	55.05	46.62	80.27	100.81	41.84
Merged-chr4-108780060-2	chr4	108779553	108780553	+	670.849976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347163, intron 1 of 18)	CpG	1035.0	NM_001347163	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	41.19	27.65	32.37	57.35	47.58	41.8	23.24	12.38	15.61
Merged-chr5-110232519-2	chr5	110232005	110233005	+	670.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027922, intron 1 of 12)	intron (NM_027922, intron 1 of 12)	1501.0	NM_027922	71782.0	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	18.88	29.49	30.52	35.09	19.13	48.23	35.91	24.32	28.73
Merged-chr13-9846954-3	chr13	9846470	9847470	+	670.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81649.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	4.58	0.92	0.0	5.4	1.87	3.22	3.17	3.98	2.5
Merged-chr6-124480459-3	chr6	124479980	124480980	+	670.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-12633.0	NM_181344	232371.0	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	5.72	5.07	0.0	4.72	3.73	4.82	5.28	3.54	0.0
Merged-chr11-102496368-3	chr11	102495876	102496876	+	670.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159492, intron 6 of 7)	intron (NM_001159492, intron 6 of 7)	-26493.0	NM_010575	16399.0	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	32.61	26.73	43.47	49.25	23.79	30.54	48.58	42.01	25.61
Merged-chr16-15984986-2	chr16	15984497	15985497	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97711.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	13.73	32.25	27.75	17.54	11.66	22.51	8.45	19.46	25.61
Merged-chrX-13282826-2	chrX	13282333	13283333	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010028, intron 1 of 16)	intron (NM_010028, intron 1 of 16)	1811.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	73.79	106.44	50.87	65.45	65.31	34.56	46.47	84.01	39.97
Merged-chr1-156540353-2	chr1	156539859	156540859	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18428.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	13.16	5.07	13.87	8.1	2.33	0.8	2.11	2.65	1.25
Merged-chr2-77288271-2	chr2	77287761	77288761	+	670.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7669.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	8.01	5.07	1.85	3.37	1.4	3.22	4.22	3.54	3.12
Merged-chr11-8708330-1	chr11	8707830	8708830	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43795.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	22.31	40.55	12.95	41.83	29.39	33.76	60.2	35.37	33.72
Merged-chr11-118469987-2	chr11	118469496	118470496	+	670.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER57-int|LTR|ERV1	-6836.0	NM_172573	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	106.97	101.83	113.77	136.97	85.84	138.25	57.03	46.87	58.08
Merged-chr9-119979062-1	chr9	119978562	119979562	+	670.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	L2|LINE|L2	3961.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	10.3	8.29	11.1	6.07	4.67	12.86	9.51	6.19	17.49
Merged-chrX-102075118-3	chrX	102074643	102075643	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163610, intron 4 of 7)	intron (NM_001163610, intron 4 of 7)	-3836.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	10.87	15.21	18.5	14.84	7.46	13.66	12.67	11.5	11.24
Merged-chr8-121580207-3	chr8	121579710	121580710	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1404.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	18.31	21.2	24.05	22.94	20.53	14.47	16.9	16.36	18.11
Merged-chr2-124707044-3	chr2	124706546	124707546	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53465.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	82.38	90.31	86.02	87.04	70.91	87.61	77.1	100.81	79.32
Merged-chr11-26203647-3	chr11	26203156	26204156	+	670.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	1416.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	7.44	5.53	0.0	5.4	5.6	9.65	4.22	3.54	1.25
Merged-chr1-170365845-2	chr1	170365346	170366346	+	670.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109985, intron 4 of 9)	MTD|LTR|ERVL-MaLR	56985.0	NM_001039593	76925.0	Mm.33631	NM_001039593	ENSMUSG00000042800	Spata46	1700015E13Rik	spermatogenesis associated 46	protein-coding	8.01	6.45	1.85	39.81	48.98	58.68	63.37	58.81	29.98
Merged-chr4-149990516-2	chr4	149990005	149991005	+	670.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12731.0	NM_001291004	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	7.44	5.53	7.4	10.12	5.13	10.45	5.28	3.1	4.37
Merged-chrX-20946214-2	chrX	20945727	20946727	+	670.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007922, intron 1 of 5)	intron (NM_007922, intron 1 of 5)	4381.0	NM_007922	13712.0	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	9.15	8.75	6.47	7.42	4.2	3.22	13.73	2.65	7.49
Merged-chr6-83107797-2	chr6	83107289	83108289	+	670.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081266, exon 8 of 9)	exon (NM_001081266, exon 8 of 9)	-1319.0	NM_026744	68499.0	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	10.87	4.61	0.0	8.77	3.73	4.82	10.56	2.65	4.37
Merged-chr2-18872964-3	chr2	18872470	18873470	+	670.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355147, intron 3 of 8)	intron (NM_001355147, intron 3 of 8)	-71152.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	5.15	6.45	12.95	6.07	4.67	3.22	2.11	1.77	5.0
Merged-chr12-98274055-3	chr12	98273558	98274558	+	670.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008152, intron 1 of 1)	intron (NM_008152, intron 1 of 1)	5423.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	19.45	29.03	37.0	18.89	20.53	17.68	25.35	22.99	31.85
Merged-chr13-74010585-6	chr13	74010081	74011081	+	670.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182839, intron 1 of 3)	intron (NM_182839, intron 1 of 3)	1162.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	28.6	20.27	24.05	35.76	14.0	9.65	13.73	16.8	6.87
Merged-chr18-84584434-2	chr18	84583929	84584929	+	670.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 1 of 8)	intron (NM_001033341, intron 1 of 8)	5075.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	5.15	10.6	12.95	8.1	6.53	9.65	16.9	8.4	8.74
Merged-chr15-85671153-3	chr15	85670661	85671661	+	670.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-32612.0	NR_110483	102800312.0	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	8.01	8.75	47.17	17.54	3.73	10.45	31.69	15.92	8.74
Merged-chr9-21040693-2	chr9	21040191	21041191	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A3|LTR|ERVL-MaLR	-8363.0	NR_035438	100316681.0		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	21.74	17.97	37.0	11.47	12.6	30.54	9.51	11.5	19.36
Merged-chr14-120342122-1	chr14	120341622	120342622	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	35670.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.58	2.76	3.7	5.4	4.67	1.61	3.17	4.86	1.25
Merged-chr8-35496196-1	chr8	35495696	35496696	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026067)	promoter-TSS (NM_026067)	-663.0	NM_026067	67276.0	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	13.16	11.52	27.75	18.22	20.53	35.37	17.96	21.67	30.6
Merged-chr10-8846447-1	chr10	8845947	8846947	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	intron (NM_175155, intron 2 of 19)	39623.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	24.6	17.51	28.67	26.99	15.39	45.01	31.69	19.9	11.24
Merged-chr5-108270752-2	chr5	108270251	108271251	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026106, intron 1 of 2)	intron (NM_026106, intron 1 of 2)	1854.0	NM_026106	13486.0	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	36.04	43.77	30.52	22.27	18.19	24.92	49.64	30.51	20.61
Merged-chrX-152147561-2	chrX	152147068	152148068	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	3300.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	2.29	4.61	1.85	4.72	1.4	0.8	1.06	0.0	2.5
Merged-chr8-74980887-1	chr8	74980387	74981387	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12763.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	4.0	5.99	1.85	2.02	0.47	3.22	2.11	5.31	6.25
Merged-chr11-52223110-1	chr11	52222610	52223610	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8885.0	NM_011543	21402.0	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	2.29	3.69	4.62	2.02	2.8	3.22	4.22	3.54	1.25
Merged-chr2-170355112-2	chr2	170354617	170355617	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029815, intron 11 of 12)	MLT1B|LTR|ERVL-MaLR	-1244.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	6.29	5.07	1.85	7.42	1.87	0.0	2.11	3.54	1.87
Merged-chr19-26604190-1	chr19	26603690	26604690	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011416)	promoter-TSS (NM_011416)	-970.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	32.04	20.74	34.22	45.21	14.93	36.17	33.8	26.09	18.11
Merged-chr6-125145724-2	chr6	125145235	125146235	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_138747)	TTS (NM_138747)	511.0	NM_001302779	320678.0	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	149.88	133.17	84.17	101.88	83.04	80.38	68.65	86.22	66.82
Merged-chr11-45539637-2	chr11	45539143	45540143	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268440.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	4.58	8.75	3.7	5.4	2.8	0.8	5.28	5.31	4.37
Merged-chr16-59570976-1	chr16	59570476	59571476	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15224.0	NM_174848	224273.0	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	3.43	0.0	11.1	0.0	4.67	1.61	8.45	14.59	8.74
Merged-chr3-79811777-2	chr3	79811301	79812301	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30861.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	3.43	1.38	0.0	5.4	4.2	3.22	2.11	0.0	1.87
Merged-chr5-25420797-2	chr5	25420294	25421294	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081383, intron 2 of 58)	intron (NM_001081383, intron 2 of 58)	77989.0	NM_001081383	231051.0	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	4.58	6.45	0.0	4.05	3.73	0.0	4.22	2.65	5.0
Merged-chr13-59848231-2	chr13	59847731	59848731	+	670.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-25084.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	11.44	10.6	3.7	4.72	2.8	2.41	5.28	5.31	2.5
Merged-chr17-26233083-1	chr17	26232583	26233583	+	670.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B3|SINE|B2	11159.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	13.73	24.42	30.52	16.87	6.53	24.92	28.52	15.92	29.35
Merged-chr14-118986874-2	chr14	118986358	118987358	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081252, exon 39 of 39)	3' UTR (NM_001081252, exon 39 of 39)	48926.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	4.0	4.61	1.85	6.75	2.33	0.8	2.11	2.65	1.25
Merged-chr8-25264417-1	chr8	25263917	25264917	+	670.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	41853.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	2.29	1.38	6.47	4.72	1.4	0.8	2.11	2.65	0.0
Merged-chr3-51652929-3	chr3	51652397	51653397	+	670.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8282.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	12.01	13.36	9.25	18.89	13.53	14.47	13.73	8.84	12.49
Merged-chr3-97965589-3	chr3	97965088	97966088	+	670.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	35415.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	45.19	47.0	27.75	68.82	57.38	40.19	31.69	36.7	9.37
Merged-chr6-137455830-2	chr6	137455336	137456336	+	670.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 25 of 26)	intron (NM_011216, intron 25 of 26)	45115.0	NM_001164403	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	4.58	2.3	3.7	2.02	2.8	3.22	5.28	1.77	5.0
Merged-chr2-90575886-2	chr2	90575358	90576358	+	670.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	4789.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	253.99	320.71	238.64	241.55	266.38	237.12	291.51	350.64	176.12
Merged-chr1-170613424-2	chr1	170612930	170613930	+	670.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23581.0	NM_001109985	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	3.43	2.3	1.85	1.35	0.93	0.0	2.11	0.44	3.75
Merged-chr8-106964860-1	chr8	106964360	106965360	+	670.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009229, intron 1 of 6)	intron (NM_009229, intron 1 of 6)	29110.0	NM_009229	20650.0	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	18.31	12.9	10.17	7.42	7.93	16.88	5.28	9.73	1.25
Merged-chr13-37452275-1	chr13	37451775	37452775	+	670.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	106930.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	46.91	25.8	40.7	60.05	35.92	54.66	50.7	32.72	19.98
Merged-chr19-34571176-3	chr19	34570689	34571689	+	670.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008332, intron 2 of 2)	RMER17C|LTR|ERVK	-12340.0	NM_010501	15959.0	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	56.06	25.34	19.42	41.16	23.33	28.94	74.99	66.33	31.23
Merged-chr1-184174615-2	chr1	184174132	184175132	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	140251.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	32.04	17.05	12.02	25.64	11.2	9.65	8.45	10.17	16.86
Merged-chr14-75229967-2	chr14	75229465	75230465	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001247984, exon 16 of 16)	3' UTR (NM_001247984, exon 16 of 16)	-12322.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	5.72	7.37	7.4	10.8	3.73	6.43	3.17	3.54	3.75
Merged-chr14-50060687-1	chr14	50060187	50061187	+	670.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	23992.0	NM_146316	258313.0	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.57	2.3	3.7	2.7	4.67	8.04	4.22	6.63	10.62
Merged-chr3-119772966-2	chr3	119772477	119773477	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	10411.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	12.01	6.91	9.25	10.12	6.53	2.41	11.62	8.4	5.62
Merged-chr15-82236742-1	chr15	82236242	82237242	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178269, intron 4 of 4)	RSINE1|SINE|B4	7594.0	NM_001080158	66570.0	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	6.29	3.69	3.7	1.35	0.93	4.82	1.06	2.21	1.25
Merged-chr1-87098756-2	chr1	87098239	87099239	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081082, exon 11 of 11)	exon (NM_001081082, exon 11 of 11)	2867.0	NM_001081082	76768.0	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	2.29	1.38	1.85	1.35	3.27	3.22	1.06	3.1	0.0
Merged-chr1-39313845-2	chr1	39313317	39314317	+	670.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008719, intron 7 of 20)	intron (NM_008719, intron 7 of 20)	-54034.0	NM_053257	114641.0	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	13.16	0.46	3.7	2.7	2.33	1.61	1.06	3.1	8.74
Merged-chr19-34562687-3	chr19	34562172	34563172	+	670.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	11584.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	13.16	10.6	14.8	10.8	9.8	12.86	13.73	9.29	23.73
Merged-chr13-37346714-3	chr13	37346223	37347223	+	670.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010745, intron 1 of 4)	intron (NM_010745, intron 1 of 4)	1378.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	209.37	225.32	168.34	186.9	175.41	136.64	252.43	287.41	111.17
Merged-chr17-35578386-3	chr17	35577858	35578858	+	670.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10873.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	6.29	2.3	0.92	1.35	1.87	0.0	5.28	1.77	8.12
Merged-chr7-45741874-1	chr7	45741374	45742374	+	670.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360784, intron 1 of 5)	intron (NM_001360784, intron 1 of 5)	604.0	NM_001360784	54200.0	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	2.86	2.3	1.85	2.02	2.8	9.65	68.65	86.66	49.34
Merged-chr10-95514059-3	chr10	95513568	95514568	+	670.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-1094.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	68.07	68.2	46.25	80.29	50.38	40.99	71.82	72.07	41.22
Merged-chr1-95397365-2	chr1	95396859	95397859	+	670.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	83731.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.58	1.84	1.85	2.7	6.53	1.61	2.11	4.86	3.75
Merged-chr10-19171241-2	chr10	19170753	19171753	+	670.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	4015.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	49.2	33.64	13.87	45.88	38.72	55.46	48.58	37.58	36.22
Merged-chr4-120869036-2	chr4	120868555	120869555	+	670.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	L2b|LINE|L2	14256.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	15.45	14.75	12.95	17.54	13.53	8.04	11.62	2.65	9.37
Merged-chr11-98814105-3	chr11	98813597	98814597	+	670.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138660, intron 3 of 13)	intron (NM_138660, intron 3 of 13)	-4008.0	NR_033551	100037262.0	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	-	predicted gene 12359	ncRNA	111.55	112.43	84.17	114.03	82.11	46.62	108.79	154.76	59.33
Merged-chr8-18946048-3	chr8	18945545	18946545	+	670.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176951, intron 2 of 6)	intron (NM_176951, intron 2 of 6)	4826.0	NM_001286469	319581.0	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	12.59	6.45	3.7	19.57	13.06	11.25	14.79	10.17	3.75
Merged-chr10-66909377-3	chr10	66908884	66909884	+	670.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11000.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	11.44	4.61	0.0	8.77	3.27	4.82	4.22	9.29	6.25
Merged-chr12-69475558-3	chr12	69475032	69476032	+	670.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038060)	promoter-TSS (NR_038060)	18.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	4.0	1.84	3.7	9.45	7.0	4.82	7.39	6.19	2.5
Merged-chr7-5052884-1	chr7	5052384	5053384	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_026900, exon 2 of 2)	exon (NM_026900, exon 2 of 2)	1352.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	2.86	1.38	0.92	6.75	5.13	6.43	2.11	1.77	2.5
Merged-chr11-99200881-1	chr11	99200381	99201381	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30136.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	10.87	8.75	7.4	6.75	4.67	5.63	7.39	4.86	5.0
Merged-chr3-107775904-2	chr3	107775395	107776395	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15426.0	NM_001113529	12977.0	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.43	5.07	8.32	5.4	0.0	8.04	7.39	0.88	6.25
Merged-chr2-181277010-2	chr2	181276502	181277502	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198169, intron 2 of 9)	intron (NM_198169, intron 2 of 9)	10964.0	NM_198169	229004.0	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	8.01	7.83	1.85	18.89	17.73	31.35	49.64	30.95	20.61
Merged-chr10-55980272-1	chr10	55979772	55980772	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-126645.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	5.72	3.69	0.0	2.02	3.27	3.22	2.11	2.21	2.5
Merged-chr3-89438839-1	chr3	89438339	89439339	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146131, intron 1 of 10)	intron (NM_146131, intron 1 of 10)	2135.0	NM_146131	229534.0	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	5.72	3.23	1.85	0.67	2.33	4.02	6.34	2.65	3.75
Merged-chr3-142314252-1	chr3	142313752	142314752	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019809, intron 4 of 7)	intron (NM_019809, intron 4 of 7)	77598.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.0	5.07	3.7	4.72	4.2	6.43	6.34	6.63	6.25
Merged-chr2-163438404-1	chr2	163437904	163438904	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144891)	promoter-TSS (NM_144891)	-63.0	NM_144891	228858.0	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	6.29	1.38	12.95	2.02	1.4	4.02	3.17	0.0	0.0
Merged-chr8-26350797-1	chr8	26350297	26351297	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	192628.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	5.72	0.92	0.0	3.37	1.4	5.63	6.34	0.88	9.99
Merged-chr1-143994057-1	chr1	143993557	143994557	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MYSERV-int|LTR|ERVK	10092.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	15.45	14.75	10.17	9.45	10.73	15.27	11.62	7.07	9.37
Merged-chr10-127055573-1	chr10	127055073	127056073	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033262)	TTS (NM_001033262)	4611.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	1.72	2.3	6.47	1.35	1.4	1.61	2.11	0.88	0.0
Merged-chr14-9637869-1	chr14	9637369	9638369	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	L2|LINE|L2	-246226.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	8.01	5.07	1.85	4.72	2.33	5.63	5.28	3.98	2.5
Merged-chr11-45627297-1	chr11	45626797	45627797	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-180786.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	7.44	11.06	16.65	14.17	12.6	20.9	3.17	1.77	12.49
Merged-chr16-8869881-1	chr16	8869381	8870381	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	39781.0	NM_001081400	69053.0	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	1.72	3.23	1.85	2.7	0.93	4.82	0.0	0.88	3.12
Merged-chr1-119087848-1	chr1	119087348	119088348	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34229.0	NM_001081125	14633.0	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.57	0.46	1.85	0.0	0.93	3.22	4.22	0.88	3.75
Merged-chr2-180702921-2	chr2	180702408	180703408	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-806.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	59.49	48.38	73.07	49.25	34.99	39.39	43.3	41.12	34.35
Merged-chr13-49355647-1	chr13	49355147	49356147	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	14098.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	3.43	0.92	1.85	4.72	5.13	8.84	5.28	2.21	1.25
Merged-chr18-32894426-2	chr18	32893918	32894918	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13745.0	NR_105779	102465186.0		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	5.72	2.76	1.85	4.05	2.8	1.61	4.22	0.88	1.25
Merged-chr19-47864881-1	chr19	47864381	47865381	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026619)	promoter-TSS (NM_026619)	-664.0	NM_030051	68214.0	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	21.74	16.59	11.1	15.52	23.33	17.68	29.57	33.16	21.86
Merged-chr1-135691699-1	chr1	135691199	135692199	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28364.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	30.32	34.1	12.95	42.51	24.26	39.39	9.51	1.77	6.25
Merged-chr17-36060994-1	chr17	36060494	36061494	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2623.0	NM_001199967	100529082.0	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	-	predicted gene 11127	protein-coding	2.29	2.76	1.85	0.67	5.13	3.22	7.39	3.1	2.5
Merged-chr8-27677338-1	chr8	27676838	27677838	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	229668.0	NM_027618	70952.0	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.57	1.84	1.85	0.67	1.87	0.0	1.06	2.21	5.62
Merged-chr19-26711441-1	chr19	26710941	26711941	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011416, intron 25 of 32)	intron (NM_011416, intron 25 of 32)	-36724.0	NM_001347439	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.0	0.92	0.0	2.02	0.47	3.22	0.0	0.88	1.87
Merged-chr10-77591048-1	chr10	77590548	77591548	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145925, intron 3 of 5)	intron (NM_145925, intron 3 of 5)	9393.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	5.72	2.3	0.0	5.4	0.93	7.23	1.06	1.33	2.5
Merged-chr13-15853243-2	chr13	15852726	15853726	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155430, intron 3 of 3)	intron (NR_155430, intron 3 of 3)	45983.0	NR_046131	328190.0	Mm.446957	NR_046131	ENSMUSG00000113338	A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.0	2.3	3.7	1.35	4.2	3.22	5.28	5.75	0.0
Merged-chr8-117338387-2	chr8	117337875	117338875	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	ID_B1|SINE|B4	-10795.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	64.64	64.97	68.45	79.62	38.25	69.93	99.28	77.82	40.59
Merged-chr5-61846533-1	chr5	61846033	61847033	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37690.0	NM_019468	14380.0	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	2.29	4.15	5.55	2.02	5.6	7.23	2.11	3.1	2.5
Merged-chr5-36574328-1	chr5	36573828	36574828	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	MIRb|SINE|MIR	8069.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	129.28	149.75	120.24	116.73	88.64	90.83	136.25	167.14	66.2
Merged-chr10-30844590-1	chr10	30844090	30845090	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1807.0	NM_013904	15214.0	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	2.86	2.76	3.7	2.7	2.33	4.82	2.11	6.63	5.0
Merged-chr19-4044361-1	chr19	4043861	4044861	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-2140.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	7.44	8.29	17.57	6.07	2.8	24.11	13.73	7.52	8.12
Merged-chr13-107953940-1	chr13	107953440	107954440	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63876.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	25.74	37.32	43.47	40.48	32.19	57.07	55.98	39.8	31.85
Merged-chr13-49220799-1	chr13	49220299	49221299	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-4773.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	6.29	6.45	24.05	6.07	5.6	3.22	21.12	11.5	8.74
Merged-chr7-122258134-1	chr7	122257634	122258634	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30991.0	NM_001316672	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	26.31	29.03	20.35	37.78	17.73	34.56	46.47	36.7	34.97
Merged-chr1-186116471-1	chr1	186115971	186116971	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146106, intron 1 of 4)	intron (NM_146106, intron 1 of 4)	839.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	37.18	48.84	19.42	38.46	27.06	5.63	43.3	35.82	10.62
Merged-chr6-124732041-1	chr6	124731541	124732541	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077705, intron 3 of 15)	intron (NM_001077705, intron 3 of 15)	1113.0	NM_013545	15170.0	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	36.04	42.85	62.9	50.6	30.32	46.62	42.25	49.08	51.21
Merged-chr3-51289343-2	chr3	51288866	51289866	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023502, intron 4 of 9)	intron (NM_023502, intron 4 of 9)	-11852.0	NM_001291062	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	14.87	7.83	12.95	10.8	3.73	12.06	14.79	1.33	7.49
Merged-chr1-191391525-3	chr1	191391034	191392034	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	5507.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	11.44	3.23	10.17	6.07	6.06	6.43	14.79	12.82	11.87
Merged-chr16-32598284-1	chr16	32597784	32598784	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10612.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	22.31	21.66	22.2	36.43	14.46	35.37	22.18	3.54	17.49
Merged-chr13-97959329-1	chr13	97958829	97959829	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012026, intron 22 of 35)	L1MD1|LINE|L1	208217.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	5.15	2.76	0.92	2.7	1.87	3.22	3.17	1.77	3.75
Merged-chr15-25825903-1	chr15	25825403	25826403	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17395.0	NM_001034851	66270.0	Mm.25311	NM_025459	ENSMUSG00000022270	Retreg1	1810015C04Rik|AU015349|Fam134b|Retreg1d	reticulophagy regulator 1	protein-coding	24.6	9.22	5.55	15.52	7.93	8.04	26.4	24.76	5.0
Merged-chr17-27586837-1	chr17	27586337	27587337	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291046, intron 2 of 4)	intron (NM_001291046, intron 2 of 4)	-21110.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	57.21	48.38	40.7	10.8	7.46	6.43	33.8	13.27	8.12
Merged-chr5-115051009-1	chr5	115050509	115051509	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029012, intron 1 of 10)	RLTR17|LTR|ERVK	39485.0	NM_029012	74585.0	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	2.29	6.91	7.4	4.05	4.2	3.22	2.11	2.21	5.62
Merged-chr7-110552492-1	chr7	110551992	110552992	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 2 of 40)	intron (NM_177324, intron 2 of 40)	62428.0	NM_177324	319934.0	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	12.59	12.44	16.65	14.17	9.33	10.45	11.62	7.96	9.99
Merged-chr9-66894235-1	chr9	66893735	66894735	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	25470.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	42.33	51.61	47.17	77.59	66.71	68.32	46.47	57.92	46.22
Merged-chr12-119026441-2	chr12	119025956	119026956	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-60035.0	NM_029961	77706.0	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	5.72	1.38	1.85	2.02	1.87	0.8	0.0	1.33	5.0
Merged-chr12-26315085-1	chr12	26314585	26315585	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 7 of 8)	intron (NM_080563, intron 7 of 8)	-31625.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	1.14	4.15	0.0	6.07	0.93	3.22	1.06	0.44	6.87
Merged-chr13-73793285-2	chr13	73792774	73793774	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360694, intron 7 of 24)	ORR1D2|LTR|ERVL-MaLR	29577.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	2.86	3.69	9.25	3.37	3.73	6.43	6.34	3.1	12.49
Merged-chr7-116477661-1	chr7	116477161	116478161	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-26708.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.72	4.15	1.85	4.72	6.06	0.0	4.22	6.19	1.87
Merged-chr14-60733097-1	chr14	60732597	60733597	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001310594, exon 1 of 10)	5' UTR (NM_001310594, exon 1 of 10)	193.0	NM_001310594	219140.0	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	5.72	2.3	1.85	14.84	5.13	4.82	4.22	3.1	3.75
Merged-chr4-132599929-1	chr4	132599429	132600429	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER34A|LTR|ERV1	35862.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	44.05	19.81	22.2	41.16	30.79	24.92	59.15	39.35	21.86
Merged-chrX-48284389-1	chrX	48283889	48284889	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045916, intron 1 of 3)	intron (NR_045916, intron 1 of 3)	1037.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	11.44	17.51	17.57	22.27	16.33	19.29	22.18	29.18	17.49
Merged-chr15-64039011-2	chr15	64038507	64039507	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	20757.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	17.16	20.27	47.17	13.49	9.33	20.9	9.51	12.82	17.49
Merged-chr5-105056635-1	chr5	105056135	105057135	+	670.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3074.0	NM_029509	76074.0	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	28.6	30.41	15.72	13.49	13.06	7.23	25.35	22.55	20.61
Merged-chr19-5714223-2	chr19	5713724	5714724	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9753.0	NM_010609	16530.0	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	44.05	33.64	45.32	56.68	20.99	61.89	60.2	49.08	49.96
Merged-chr3-65882215-1	chr3	65881715	65882715	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	76034.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	4.58	5.99	10.17	6.07	4.67	4.02	7.39	3.1	8.12
Merged-chr17-33993121-1	chr17	33992621	33993621	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	7212.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	12.59	1.84	0.0	2.7	3.73	0.8	4.22	3.1	1.25
Merged-chr10-80163093-1	chr10	80162593	80163593	+	670.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-4746.0	NM_007705	12696.0	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	22.88	15.67	4.62	12.82	11.2	29.74	15.84	14.59	22.48
Merged-chr18-80312440-1	chr18	80311940	80312940	+	670.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190373, intron 3 of 3)	intron (NM_001190373, intron 3 of 3)	51814.0	NM_001190373	240444.0	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	49.77	56.22	78.62	30.36	36.39	48.23	52.81	76.94	66.82
Merged-chr6-108444619-2	chr6	108444143	108445143	+	669.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-45100.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	50.34	36.86	20.35	84.34	70.91	49.83	62.31	38.47	29.35
Merged-chr18-38494887-3	chr18	38494392	38495392	+	669.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75985.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	7.44	1.84	1.85	6.75	1.4	4.02	5.28	1.77	5.62
Merged-chr1-9967358-4	chr1	9966825	9967825	+	669.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285425, exon 1 of 2)	exon (NM_001285425, exon 1 of 2)	160.0	NM_001285425	100039596.0	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	Gm10567|Gm2330	transcription factor 24	protein-coding	4.0	0.92	5.55	4.05	0.93	0.0	4.22	0.88	4.37
Merged-chr14-118090113-2	chr14	118089611	118090611	+	669.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37865.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	25.17	25.8	20.35	33.74	33.12	39.39	23.24	39.8	8.74
Merged-chr9-90270330-2	chr9	90269841	90270841	+	669.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	CpG	428.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	106.97	170.49	184.99	107.95	153.01	178.44	235.53	230.81	173.62
Merged-chr9-109892858-3	chr9	109892353	109893353	+	669.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007658, exon 15 of 15)	3' UTR (NM_007658, exon 15 of 15)	3210.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	5.72	2.76	1.85	0.0	2.33	0.0	3.17	1.77	3.12
Merged-chrX-99197780-2	chrX	99197281	99198281	+	669.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	61720.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	5.72	4.15	5.55	4.05	3.73	8.04	8.45	4.86	4.37
Merged-chr13-46929480-2	chr13	46928964	46929964	+	669.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010617, intron 1 of 37)	CpG	254.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	33.18	27.65	61.97	18.22	23.79	40.19	47.53	23.88	36.85
Merged-chr17-12810615-2	chr17	12810111	12811111	+	669.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027784, intron 2 of 2)	intron (NR_027784, intron 2 of 2)	-40905.0	NM_010515	16004.0	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	4.0	1.84	0.0	4.05	1.4	1.61	4.22	2.65	4.37
Merged-chr11-106329345-2	chr11	106328846	106329846	+	669.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-14784.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	2.86	3.23	2.77	15.52	5.6	0.0	14.79	8.84	3.75
Merged-chr13-58572895-3	chr13	58572382	58573382	+	669.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022317, intron 8 of 17)	intron (NM_022317, intron 8 of 17)	37995.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	10.3	4.15	3.7	12.14	7.0	3.22	6.34	4.86	1.25
Merged-chr9-63737597-2	chr9	63737083	63738083	+	669.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	20411.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	41.76	27.65	19.42	51.28	27.06	22.51	35.91	28.74	8.74
Merged-chr7-142393940-1	chr7	142393440	142394440	+	669.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6070.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	218.52	197.68	176.67	180.15	116.16	147.09	194.34	240.54	143.02
Merged-chr17-36182542-2	chr17	36182033	36183033	+	669.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3756.0	NR_033619	625785.0	Mm.390996	NR_033619		Gm6623	EG625785	akirin 1 pseudogene	pseudo	3.43	2.76	1.85	2.7	2.33	4.82	2.11	3.98	2.5
Merged-chr17-26705656-2	chr17	26705147	26706147	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10003.0	NM_029870	77128.0	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	13.73	9.68	13.87	22.94	17.26	32.96	21.12	14.15	7.49
Merged-chr4-139116429-2	chr4	139115943	139116943	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163006, intron 1 of 3)	intron (NM_001163006, intron 1 of 3)	14594.0	NR_033745	433771.0	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	8.58	8.29	10.17	16.87	10.26	12.86	8.45	10.17	5.0
Merged-chr17-45629314-2	chr17	45628833	45629833	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001013767)	TTS (NM_001013767)	-27231.0	NM_001177469	653016.0	Mm.45676	NM_001177468	ENSMUSG00000079471	Mymx	EG653016|Esgp|Gm7325|minion|myomerger	myomixer, myoblast fusion factor	protein-coding	12.59	8.29	11.1	12.82	6.53	16.08	10.56	3.98	11.87
Merged-chr6-114250488-2	chr6	114249983	114250983	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172890)	TTS (NM_172890)	-32152.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	5.15	2.3	3.7	4.05	4.67	0.0	5.28	3.1	0.62
Merged-chr8-117470519-2	chr8	117470017	117471017	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11252.0	NR_106046	102465653.0		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	1.72	1.38	0.0	0.0	0.93	1.61	5.28	0.88	3.75
Merged-chr1-138582447-2	chr1	138581951	138582951	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 1 of 9)	LTR16A|LTR|ERVL	37306.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	9.15	5.99	12.02	9.45	7.0	5.63	6.34	3.1	13.74
Merged-chr13-17914792-2	chr13	17914302	17915302	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019491, intron 1 of 4)	intron (NM_019491, intron 1 of 4)	29415.0	NM_019491	56044.0	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	12.01	15.67	9.25	6.75	14.46	9.65	20.07	19.9	8.74
Merged-chr13-107784141-1	chr13	107783641	107784641	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	96744.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	5.72	13.36	11.1	14.17	14.46	10.45	7.39	9.73	7.49
Merged-chr3-126628137-1	chr3	126627637	126628637	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	31186.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	117.27	138.24	50.87	153.84	162.81	93.24	105.62	113.64	57.46
Merged-chr17-14988040-2	chr17	14987538	14988538	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001123370, intron 9 of 11)	intron (NM_001123370, intron 9 of 11)	9174.0	NM_001123370	100041574.0	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	14.87	22.58	1.85	7.42	9.8	3.22	3.17	4.42	0.0
Merged-chr19-46303879-3	chr19	46303370	46304370	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177369)	promoter-TSS (NM_001177369)	-867.0	NM_001177369	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	102.97	61.75	36.07	93.79	52.25	71.54	60.2	65.0	30.6
Merged-chr1-80660662-3	chr1	80660151	80661151	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	4701.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	48.62	94.46	37.92	56.0	77.44	75.56	83.44	89.32	57.46
Merged-chr7-122196916-1	chr7	122196416	122197416	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10685.0	NM_001316689	26918.0	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	9.72	11.06	5.55	4.05	4.67	11.25	8.45	7.07	8.12
Merged-chr9-118922112-2	chr9	118921608	118922608	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4428.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	7.44	4.15	2.77	4.05	2.8	3.22	4.22	1.33	3.75
Merged-chr14-63467776-1	chr14	63467276	63468276	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31382.0	NM_177628	219148.0	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	5.72	5.53	3.7	6.75	2.33	15.27	6.34	3.98	4.37
Merged-chr14-40934380-1	chr14	40933880	40934880	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	13829.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	38.9	38.71	20.35	45.21	44.78	32.15	27.46	29.18	10.62
Merged-chr12-115328555-1	chr12	115328055	115329055	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	367239.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	5.72	6.45	5.55	0.0	0.0	0.0	0.0	0.88	2.5
Merged-chr19-17321930-1	chr19	17321430	17322430	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	17575.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	15.45	5.99	21.27	8.1	8.86	8.84	9.51	4.86	2.5
Merged-chr8-104403735-1	chr8	104403235	104404235	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7928.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	5.15	2.76	1.85	1.35	2.8	3.22	5.28	0.88	1.25
Merged-chr7-123211071-2	chr7	123210572	123211572	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3794.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.86	5.99	7.4	7.42	7.93	15.27	4.22	7.52	5.0
Merged-chr14-33118537-1	chr14	33118037	33119037	+	669.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 13 of 58)	intron (NM_001146022, intron 13 of 58)	66529.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	14.3	12.44	3.7	12.82	7.93	20.9	10.56	7.07	2.5
Merged-chr14-103475111-1	chr14	103474611	103475611	+	669.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38230.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	10.87	14.75	9.25	18.89	7.0	4.82	17.96	24.32	12.49
Merged-chr15-27629968-3	chr15	27629457	27630457	+	669.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013792, intron 1 of 6)	intron (NM_001013792, intron 1 of 6)	736.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	80.66	94.46	53.65	80.29	73.24	65.11	105.62	96.83	66.2
Merged-chr19-15990333-2	chr19	15989830	15990830	+	669.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	L1M4b|LINE|L1	5255.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	12.01	14.75	12.95	9.45	12.6	16.88	20.07	15.03	19.36
Merged-chr19-10970798-1	chr19	10970298	10971298	+	669.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023529, intron 1 of 8)	intron (NM_023529, intron 1 of 8)	3872.0	NM_023529	69826.0	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	21.74	23.5	22.2	9.45	2.8	5.63	6.34	1.77	11.87
Merged-chr3-144572395-2	chr3	144571895	144572895	+	669.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 1 of 4)	intron (NM_053102, intron 1 of 4)	1968.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	12.59	17.51	11.1	18.89	6.06	11.25	7.39	19.01	3.75
Merged-chr8-15043038-2	chr8	15042546	15043546	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_037972, exon 2 of 2)	non-coding (NR_037972, exon 2 of 2)	3032.0	NR_037972	434285.0	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	3.43	3.69	3.7	2.02	0.93	3.22	0.0	0.88	2.5
Merged-chrX-155147136-2	chrX	155146628	155147628	+	669.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081671, intron 1 of 2)	intron (NM_001081671, intron 1 of 2)	721.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	11.44	13.82	18.5	22.94	17.26	17.68	13.73	22.99	12.49
Merged-chr14-106692385-2	chr14	106691898	106692898	+	669.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205878.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	1.14	2.3	0.0	2.02	4.67	3.22	5.28	1.77	1.25
Merged-chr15-103552293-2	chr15	103551785	103552785	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12796.0	NM_001289587	14663.0	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	6.29	5.07	7.4	6.75	2.33	0.8	3.17	0.88	1.25
Merged-chr16-43930284-2	chr16	43929770	43930770	+	669.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027801, intron 6 of 15)	intron (NM_027801, intron 6 of 15)	40368.0	NM_027801	212153.0	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	16.59	18.43	29.6	28.34	20.06	22.51	10.56	14.59	16.24
Merged-chr8-123357884-1	chr8	123357384	123358384	+	669.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172287, intron 6 of 14)	intron (NM_172287, intron 6 of 14)	-15827.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	2.86	1.84	7.4	2.02	1.4	0.0	8.45	5.75	3.75
Merged-chr12-51666825-1	chr12	51666325	51667325	+	669.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	intron (NM_001172098, intron 1 of 15)	-24141.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	7.44	11.98	12.95	10.12	12.6	11.25	10.56	5.31	8.12
Merged-chr6-28899105-1	chr6	28898605	28899605	+	669.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67358.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	1.14	1.38	1.85	5.4	0.47	6.43	2.11	1.33	1.25
Merged-chr8-12757485-3	chr8	12757006	12758006	+	669.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015804, intron 1 of 28)	CpG	490.0	NM_001293667	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	16.02	11.98	18.5	24.29	18.66	16.88	31.69	12.38	2.5
Merged-chr11-107321730-3	chr11	107321272	107322272	+	669.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	-132391.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	64.07	58.52	71.22	92.44	35.92	74.75	78.16	75.17	53.08
Merged-chr5-123395511-3	chr5	123395050	123396050	+	669.277771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	752.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	167.04	186.62	159.09	157.88	118.96	137.45	209.12	187.04	110.54
Merged-chrX-21089372-2	chrX	21088860	21089860	+	669.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183185)	promoter-TSS (NM_183185)	-131.0	NM_183185	245368.0	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	4.0	9.22	8.32	10.12	18.66	18.49	11.62	9.73	7.49
Merged-chr5-99269273-2	chr5	99268760	99269760	+	669.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16333.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	68.65	67.74	76.77	52.63	53.65	49.03	28.52	37.58	25.61
Merged-chr15-63985873-3	chr15	63985380	63986380	+	669.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	intron (NM_144846, intron 1 of 11)	12186.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	26.31	14.75	11.1	20.24	16.79	12.86	24.29	12.82	16.24
Merged-chr18-83011840-3	chr18	83011337	83012337	+	669.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-91277.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	6.29	3.23	0.0	1.35	4.67	2.41	1.06	2.21	4.37
Merged-chr4-135801684-2	chr4	135801185	135802185	+	669.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085509, intron 27 of 36)	intron (NM_001085509, intron 27 of 36)	41970.0	NM_001085509	242702.0	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	4.0	3.23	1.85	5.4	1.87	1.61	3.17	2.65	0.0
Merged-chr11-100612329-2	chr11	100611850	100612850	+	669.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019795, intron 1 of 13)	MLTR14|LTR|ERV1	7818.0	NM_019795	56354.0	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	54.35	56.22	54.57	49.25	30.32	49.83	43.3	62.35	41.84
Merged-chr17-34951028-2	chr17	34950608	34951608	+	669.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028527)	promoter-TSS (NR_028527)	-100.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	10.87	11.06	12.02	12.14	8.86	3.22	12.67	8.84	9.99
Merged-chr3-89393099-3	chr3	89392556	89393556	+	669.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355211)	promoter-TSS (NM_001355211)	322.0	NM_009565	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	84.09	92.62	71.22	43.18	52.25	65.91	96.11	101.7	69.32
Merged-chr18-32187451-3	chr18	32186944	32187944	+	669.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	intron (NM_011946, intron 1 of 16)	24355.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	10.87	10.6	3.7	9.45	10.73	8.84	6.34	3.98	12.49
Merged-chr5-118473717-1	chr5	118473217	118474217	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87002.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.15	3.23	0.0	4.05	1.87	3.22	6.34	2.65	3.75
Merged-chr3-51494721-1	chr3	51494221	51495221	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_016858, exon 2 of 2)	3' UTR (NM_016858, exon 2 of 2)	10755.0	NM_016858	19338.0	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	9.72	8.29	9.25	16.87	5.6	24.11	29.57	11.94	3.12
Merged-chr13-45311681-1	chr13	45311181	45312181	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78061.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.43	5.07	1.85	6.75	8.4	1.61	10.56	10.17	6.25
Merged-chr2-104105479-2	chr2	104104976	104105976	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007652, intron 2 of 3)	intron (NM_007652, intron 2 of 3)	9675.0	NM_001111060	12509.0	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	2.29	3.23	5.55	3.37	4.67	12.86	6.34	7.07	5.62
Merged-chr2-127135464-1	chr2	127134964	127135964	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-1510.0	NM_144818	215387.0	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|CAP-H|HCAP-H|mCAP-H	non-SMC condensin I complex, subunit H	protein-coding	5.15	7.37	9.25	2.7	2.8	3.22	5.28	5.31	14.99
Merged-chr13-104940078-1	chr13	104939578	104940578	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76185.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	0.57	2.76	0.0	2.02	2.8	1.61	2.11	2.21	2.5
Merged-chr8-105706005-1	chr8	105705505	105706505	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198299, intron 4 of 7)	B1_Mm|SINE|Alu	2163.0	NM_198299	102124.0	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	5.72	4.15	20.35	2.02	3.27	4.82	11.62	4.86	2.5
Merged-chr2-140718446-2	chr2	140717940	140718940	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	-46964.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.86	4.61	3.7	6.75	2.33	4.82	5.28	4.42	12.49
Merged-chr13-44923057-1	chr13	44922557	44923557	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025772, intron 9 of 9)	intron (NM_025772, intron 9 of 9)	79039.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	12.01	5.99	13.87	6.07	6.06	6.43	4.22	2.65	2.5
Merged-chr4-145354062-1	chr4	145353562	145354562	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38915.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	3.43	5.99	1.85	4.05	10.73	8.04	10.56	7.52	5.62
Merged-chr12-100131909-1	chr12	100131409	100132409	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290303, intron 10 of 13)	intron (NM_001290303, intron 10 of 13)	19578.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	3.43	2.3	0.0	3.37	1.4	4.02	2.11	3.1	5.62
Merged-chr5-72867599-2	chr5	72867089	72868089	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	859.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.58	10.14	1.85	6.07	11.66	4.02	8.45	5.75	6.25
Merged-chr6-47780604-1	chr6	47780104	47781104	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	23048.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	36.04	53.91	24.05	37.78	39.19	25.72	51.75	93.74	42.47
Merged-chr12-103368667-1	chr12	103368167	103369167	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-8227.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	12.01	4.61	4.62	2.7	2.33	8.84	4.22	4.42	5.0
Merged-chr15-6568680-2	chr15	6568203	6569203	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11144.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	254.56	325.31	149.84	226.71	220.19	208.98	243.98	310.84	184.86
Merged-chr3-10418343-1	chr3	10417843	10418843	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029068, exon 8 of 8)	3' UTR (NM_029068, exon 8 of 8)	21787.0	NM_029068	74718.0	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	4.58	3.23	8.32	13.49	13.06	14.47	5.28	3.1	5.0
Merged-chr1-120528241-1	chr1	120527741	120528741	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23217.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	21.74	27.65	31.45	18.89	9.8	8.84	52.81	30.95	19.98
Merged-chr4-134120358-2	chr4	134119850	134120850	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	MIR|SINE|MIR	8403.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	6.86	6.91	7.4	6.07	3.27	1.61	22.18	16.36	13.74
Merged-chrX-72023733-1	chrX	72023233	72024233	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31884.0	NM_007724	12789.0	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	5.72	2.3	3.7	0.67	4.2	0.8	0.0	2.21	1.25
Merged-chr2-11492606-1	chr2	11492106	11493106	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177752, exon 3 of 14)	exon (NM_001177752, exon 3 of 14)	9484.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	13.73	9.22	16.65	12.82	11.66	16.08	12.67	9.73	14.36
Merged-chr16-10417492-1	chr16	10416992	10417992	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011955, intron 3 of 10)	intron (NM_011955, intron 3 of 10)	5554.0	NM_011955	26425.0	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	34.9	49.3	40.7	36.43	30.32	60.28	43.3	46.43	58.08
Merged-chr6-92940337-1	chr6	92939837	92940837	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015530)	promoter-TSS (NR_015530)	-245.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	1.14	4.15	0.0	14.84	19.13	9.65	3.17	0.44	5.62
Merged-chr2-45003752-1	chr2	45003252	45004252	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 4 of 9)	intron (NM_001355291, intron 4 of 9)	19425.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	11.44	12.9	16.65	10.8	8.4	16.08	13.73	14.15	9.37
Merged-chr14-76964716-1	chr14	76964216	76965216	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71901.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	25.17	22.12	3.7	33.06	36.85	15.27	4.22	2.65	4.37
Merged-chr17-63400912-1	chr17	63400412	63401412	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	Lx7|LINE|L1	-87939.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	7.44	3.23	3.7	4.05	3.27	3.22	3.17	2.65	6.25
Merged-chr9-46173154-1	chr9	46172654	46173654	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 4 of 24)	intron (NM_027498, intron 4 of 24)	-55476.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	5.72	3.23	5.55	1.35	0.93	1.61	2.11	2.21	5.0
Merged-chr2-160175260-1	chr2	160174760	160175760	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	152234.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	13.16	11.98	7.4	12.82	17.26	16.88	11.62	16.36	9.99
Merged-chr4-3796093-1	chr4	3795593	3796593	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39562.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	13.16	4.15	12.95	10.12	2.33	14.47	1.06	7.52	8.74
Merged-chrX-12761354-1	chrX	12760854	12761854	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045852)	promoter-TSS (NR_045852)	619.0	NM_012005	26896.0	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	126.42	117.04	105.44	98.51	81.17	78.77	109.84	95.95	91.18
Merged-chr19-10580942-2	chr19	10580451	10581451	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362431, intron 3 of 7)	intron (NM_001362431, intron 3 of 7)	3503.0	NM_001282067	225912.0	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	6.29	8.75	1.85	14.17	7.46	4.82	4.22	2.21	1.87
Merged-chrX-167263690-1	chrX	167263190	167264190	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	URR1B|DNA|hAT-Charlie	639.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	52.06	109.21	57.35	94.46	103.56	80.38	107.73	127.34	51.21
Merged-chr2-119970758-1	chr2	119970258	119971258	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1941.0	NM_001355293	26390.0	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	8.01	5.53	0.0	4.72	2.8	6.43	2.11	7.52	6.87
Merged-chr2-9990369-1	chr2	9989869	9990869	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	58240.0	NM_027748	209361.0	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	18.88	17.97	3.7	23.62	19.13	19.29	28.52	27.86	13.12
Merged-chr1-87028929-1	chr1	87028429	87029429	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	60999.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	14.87	12.44	7.4	6.07	3.27	6.43	4.22	2.65	5.62
Merged-chr2-148050583-1	chr2	148050083	148051083	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3614.0	NM_010446	15376.0	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.43	3.23	6.47	1.35	1.87	1.61	10.56	6.63	14.99
Merged-chr1-84251429-3	chr1	84250914	84251914	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	Lx8|LINE|L1	-32453.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	27.46	31.79	28.67	27.66	27.99	40.99	32.74	15.48	21.23
Merged-chr10-8879382-1	chr10	8878882	8879882	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	6688.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	68.65	49.76	34.22	64.77	43.85	63.5	68.65	36.26	51.21
Merged-chr8-11323358-1	chr8	11322858	11323858	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-10532.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.57	4.15	9.25	5.4	3.27	4.82	4.22	1.33	1.25
Merged-chr10-84381690-2	chr10	84381189	84382189	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 4 of 6)	MER44B|DNA|TcMar-Tigger	58782.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	1.72	5.53	1.85	4.05	6.53	0.0	5.28	1.33	9.37
Merged-chr4-123686977-1	chr4	123686477	123687477	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2617.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	8.58	0.46	5.55	4.72	1.87	0.0	4.22	1.33	1.25
Merged-chr12-52474615-2	chr12	52474120	52475120	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5989.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	16.59	13.82	14.8	15.52	9.33	12.86	16.9	12.82	14.99
Merged-chr17-45559960-1	chr17	45559460	45560460	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008690, intron 3 of 5)	intron (NM_008690, intron 3 of 5)	-3976.0	NM_001357105	73836.0	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	5.15	3.69	1.85	2.7	0.93	3.22	2.11	1.33	11.24
Merged-chr11-80144345-1	chr11	80143845	80144845	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2192.0	NM_183275	68550.0	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	37.76	27.65	29.6	30.36	23.33	25.72	30.63	31.39	29.98
Merged-chr5-123866654-2	chr5	123866156	123867156	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	32.04	29.49	29.6	16.19	10.73	17.68	34.85	32.72	17.49
Merged-chr19-40744363-1	chr19	40743863	40744863	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	84593.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.15	4.15	5.55	4.72	4.2	4.82	1.06	0.44	0.62
Merged-chr9-3016066-2	chr9	3015549	3016549	+	669.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	22694.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	7.44	50.23	6.47	10.8	55.98	2.41	10.56	14.15	5.62
Merged-chr18-47917740-1	chr18	47917240	47918240	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5101.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.0	4.15	4.62	4.05	5.13	1.61	2.11	3.54	1.87
Merged-chr19-46740793-1	chr19	46740293	46741293	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_020577, exon 11 of 11)	3' UTR (NM_020577, exon 11 of 11)	-20816.0	NM_033569	94219.0	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.0	1.38	5.55	4.05	2.8	2.41	5.28	3.54	3.75
Merged-chr7-80696581-1	chr7	80696081	80697081	+	669.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7704.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	1.14	2.76	0.0	4.72	3.27	4.02	4.22	1.33	3.12
Merged-chr3-96938920-2	chr3	96938424	96939424	+	669.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12873.0	NM_008123	14616.0	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	6.29	0.92	3.7	2.7	0.47	1.61	2.11	0.88	1.25
Merged-chr10-84337882-3	chr10	84337384	84338384	+	668.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17A|LTR|ERVK	102587.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	55.49	52.99	52.72	62.75	48.05	65.11	57.03	49.96	57.46
Merged-chr1-163910495-3	chr1	163909998	163910998	+	668.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-18602.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	2.86	1.38	3.7	2.7	2.33	2.41	2.11	1.77	4.37
Merged-chr11-78465709-2	chr11	78465219	78466219	+	668.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026740)	promoter-TSS (NM_026740)	18.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	35.47	29.03	40.7	33.74	36.39	58.68	34.85	30.51	31.85
Merged-chr9-114727491-2	chr9	114727014	114728014	+	668.866699	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3689.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	3.43	4.15	3.7	1.35	0.93	3.22	3.17	2.21	5.0
Merged-chr4-45513572-2	chr4	45513070	45514070	+	668.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	17258.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	69.79	51.15	31.45	73.54	40.12	47.42	59.15	49.52	11.24
Merged-chr1-180640960-2	chr1	180640485	180641485	+	668.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_120498)	promoter-TSS (NR_120498)	-165.0	NM_001103182	72568.0	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	51.48	33.18	23.12	41.83	31.72	40.19	46.47	27.86	22.48
Merged-chr10-40189826-3	chr10	40189348	40190348	+	668.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR6-int|LTR|ERV1	-47594.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.43	1.84	0.0	2.7	3.27	1.61	7.39	0.44	1.25
Merged-chr11-120721572-3	chr11	120721039	120722039	+	668.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133223)	promoter-TSS (NM_133223)	71.0	NM_133223	170758.0	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	Rac family small GTPase 3	protein-coding	20.59	5.53	19.42	18.22	10.73	16.88	26.4	12.82	1.25
Merged-chr10-60285162-2	chr10	60284634	60285634	+	668.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146124, intron 1 of 13)	intron (NM_001146124, intron 1 of 13)	673.0	NM_001146124	19156.0	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	160.18	141.46	141.52	126.85	138.09	159.95	238.7	241.42	100.55
Merged-chr1-80326175-2	chr1	80325683	80326683	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016716, intron 1 of 15)	MIR|SINE|MIR	14507.0	NM_001313728	26554.0	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	14.87	12.44	4.62	11.47	8.4	8.04	10.56	14.15	11.87
Merged-chr17-56276241-1	chr17	56275741	56276741	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174989, intron 1 of 1)	intron (NM_174989, intron 1 of 1)	526.0	NM_174989	106759.0	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	199.07	141.0	123.94	210.51	137.15	113.33	210.18	167.58	85.56
Merged-chr15-66034093-1	chr15	66033593	66034593	+	668.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-57289.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	4.0	2.3	0.92	2.02	0.47	1.61	1.06	6.63	0.0
Merged-chr4-46585220-2	chr4	46584735	46585735	+	668.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164804, intron 1 of 11)	intron (NM_001164804, intron 1 of 11)	16694.0	NM_001164804	107684.0	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	28.6	28.57	31.45	22.27	16.79	26.53	4.22	0.44	3.75
Merged-chr10-25410945-3	chr10	25410452	25411452	+	668.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	2584.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	41.19	48.84	49.95	35.09	33.59	33.76	30.63	28.3	31.85
Merged-chr19-47405747-3	chr19	47405250	47406250	+	668.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	G-rich|Low_complexity|Low_complexity	58661.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	36.61	35.02	26.82	44.53	30.32	25.72	30.63	37.58	29.35
Merged-chr17-45708403-3	chr17	45707891	45708891	+	668.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22042.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	10.87	10.6	12.95	5.4	2.8	3.22	10.56	11.94	10.62
Merged-chr11-75625495-1	chr11	75624995	75625995	+	668.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008850, exon 11 of 12)	exon (NM_008850, exon 11 of 12)	-5525.0	NM_008916	19062.0	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	13.16	11.98	12.02	22.27	17.26	38.58	14.79	12.82	14.36
Merged-chr7-24851066-1	chr7	24850566	24851566	+	668.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18625.0	NM_182785	232973.0	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	10.3	6.45	12.95	14.84	21.46	9.65	20.07	12.38	6.25
Merged-chr6-121247181-2	chr6	121246676	121247676	+	668.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011909, intron 1 of 10)	intron (NM_011909, intron 1 of 10)	1270.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	16.02	11.52	0.0	12.14	13.53	11.25	26.4	15.92	21.23
Merged-chr7-3706713-2	chr7	3706221	3707221	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029767, exon 5 of 5)	exon (NM_029767, exon 5 of 5)	2680.0	NM_029767	76846.0	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	52.06	76.49	59.2	54.65	37.79	67.52	34.85	50.85	55.58
Merged-chr15-25144410-2	chr15	25143905	25144905	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269359.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	6.29	1.38	1.85	5.4	1.87	3.22	1.06	1.77	0.0
Merged-chr11-49847518-2	chr11	49847000	49848000	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 1 of 11)	intron (NM_016961, intron 1 of 11)	749.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	133.86	120.26	153.54	83.66	79.31	79.58	170.05	143.26	119.28
Merged-chr6-30303376-2	chr6	30302861	30303861	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009459, intron 1 of 6)	intron (NM_009459, intron 1 of 6)	1178.0	NM_009459	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	148.73	129.02	95.27	143.71	83.04	89.22	149.98	137.96	86.18
Merged-chr4-10973858-2	chr4	10973362	10974362	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	33757.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	2.29	2.76	1.85	3.37	6.06	5.63	16.9	10.17	5.62
Merged-chr17-10822724-2	chr17	10822233	10823233	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 1 of 4)	intron (NM_027032, intron 1 of 4)	17458.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	10.87	11.52	31.45	10.8	8.4	4.82	8.45	4.86	0.0
Merged-chr19-46509356-2	chr19	46508845	46509845	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	7697.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	42.33	57.14	69.37	39.81	46.18	86.01	62.31	48.2	58.08
Merged-chr6-73709812-3	chr6	73709322	73710322	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-238801.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	6.29	2.76	6.47	2.02	9.8	9.65	2.11	4.42	13.74
Merged-chr11-116869419-1	chr11	116868919	116869919	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178620, intron 10 of 12)	intron (NM_178620, intron 10 of 12)	15419.0	NM_001361586	69900.0	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	80.09	96.76	37.92	122.8	105.43	94.04	109.84	112.31	41.22
Merged-chr4-120851158-2	chr4	120850650	120851650	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3649.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	7.44	4.61	1.85	2.7	2.33	2.41	2.11	4.86	3.75
Merged-chrX-85293686-1	chrX	85293186	85294186	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44009.0	NM_028046	71996.0	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	2.86	2.3	8.32	6.75	5.6	6.43	3.17	3.54	0.0
Merged-chr6-17066116-2	chr6	17065599	17066599	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207176, intron 1 of 6)	intron (NM_207176, intron 1 of 6)	950.0	NM_207176	21753.0	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	9.15	5.53	3.7	8.1	9.33	1.61	3.17	4.86	2.5
Merged-chr12-17724706-1	chr12	17724206	17725206	+	668.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	33897.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	10.87	13.82	17.57	5.4	9.8	25.72	41.19	42.01	34.35
Merged-chr18-24407478-1	chr18	24406978	24407978	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21692.0	NR_029573	387182.0		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	5.72	5.07	9.25	12.14	5.13	6.43	19.01	8.4	4.37
Merged-chr4-111045686-2	chr4	111045190	111046190	+	668.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	intron (NM_001284190, intron 4 of 12)	-369316.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	5.15	5.53	3.7	2.7	5.13	1.61	0.0	3.98	0.62
Merged-chr7-100894772-1	chr7	100894272	100895272	+	668.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081116, intron 1 of 20)	CpG	-12363.0	NR_037289	100526508.0		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	4.58	1.84	0.0	4.05	2.8	1.61	7.39	0.0	1.87
Merged-chr11-80932546-1	chr11	80932046	80933046	+	668.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034013, intron 3 of 9)	intron (NM_001034013, intron 3 of 9)	74157.0	NM_029367	75622.0	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	18.31	22.12	12.02	12.82	9.33	12.06	24.29	19.46	13.12
Merged-chr11-70792638-3	chr11	70792130	70793130	+	668.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045526, intron 4 of 4)	intron (NM_001045526, intron 4 of 4)	19931.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	72.65	57.14	52.72	72.19	32.66	50.64	53.87	70.3	51.84
Merged-chr9-58204256-3	chr9	58203732	58204732	+	668.450012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161541)	promoter-TSS (NM_001161541)	87.0	NM_001161541	320563.0	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	10.87	7.37	0.0	9.45	2.8	0.0	6.34	0.88	2.5
Merged-chr2-73395680-2	chr2	73395174	73396174	+	668.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	-9194.0	NM_001276444	68526.0	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	8.01	3.23	11.1	12.14	4.2	10.45	7.39	8.4	5.62
Merged-chr8-34216111-2	chr8	34215594	34216594	+	668.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49382.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	4.58	6.91	7.4	8.77	13.53	3.22	20.07	20.78	14.36
Merged-chr2-118573501-1	chr2	118573001	118574001	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-23815.0	NM_138313	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.29	2.76	3.7	3.37	4.67	8.04	6.34	1.77	1.25
Merged-chr9-54501202-1	chr9	54500702	54501702	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172771, intron 1 of 43)	CpG	424.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	100.11	75.11	50.87	139.67	132.95	81.99	90.83	62.35	43.72
Merged-chr5-21395362-1	chr5	21394862	21395862	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	22689.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	18.88	11.98	7.4	7.42	7.93	3.22	19.01	13.71	11.24
Merged-chr5-31956548-1	chr5	31956048	31957048	+	668.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	L2a|LINE|L2	-179924.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	1.72	4.61	0.0	4.72	1.4	3.22	0.0	5.75	5.0
Merged-chr5-90977455-3	chr5	90976969	90977969	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026788, intron 6 of 7)	intron (NM_026788, intron 6 of 7)	46273.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	7.44	5.99	7.4	9.45	5.13	3.22	1.06	0.88	6.25
Merged-chr9-59565772-3	chr9	59565289	59566289	+	668.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010421)	TTS (NM_010421)	-12548.0	NM_175235	76183.0	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	12.01	6.91	18.5	13.49	5.13	16.88	8.45	4.42	7.49
Merged-chr11-115643532-2	chr11	115643042	115644042	+	668.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008163)	TTS (NM_008163)	-15247.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	28.6	17.05	17.57	30.36	9.33	22.51	40.14	24.76	27.48
Merged-chr8-13339112-2	chr8	13338637	13339637	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358991, intron 1 of 12)	CpG	333.0	NM_009361	21781.0	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	55.49	45.16	35.15	74.22	54.58	46.62	129.91	34.93	39.97
Merged-chr8-122501050-2	chr8	122500543	122501543	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037298, intron 10 of 50)	intron (NM_001037298, intron 10 of 50)	24900.0	NR_152823	66965.0	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	2.86	5.53	3.7	8.77	2.8	3.22	3.17	1.33	1.25
Merged-chr4-122859271-2	chr4	122858762	122859762	+	668.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008917)	TTS (NM_008917)	23035.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	16.02	21.2	33.3	26.99	17.73	37.78	24.29	33.6	9.99
Merged-chr17-6314210-1	chr17	6313710	6314710	+	668.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166629, intron 2 of 4)	B2_Mm1t|SINE|B2	3264.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	4.58	4.15	1.85	2.02	2.33	0.8	3.17	4.86	0.0
Merged-chr11-117116955-3	chr11	117116427	117117427	+	668.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166507, intron 1 of 16)	intron (NM_001166507, intron 1 of 16)	1755.0	NM_001166506	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	93.82	113.81	63.82	105.26	100.77	86.01	148.92	211.36	61.83
Merged-chr1-171619860-3	chr1	171619369	171620369	+	668.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12459.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	49.2	63.59	37.92	79.62	59.25	75.56	71.82	95.07	53.71
Merged-chr6-87400116-2	chr6	87399617	87400617	+	668.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11182.0	NM_026860	68888.0	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	6.29	4.61	12.95	16.19	15.39	3.22	8.45	6.63	3.12
Merged-chr3-19300333-2	chr3	19299857	19300857	+	668.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	(TG)n|Simple_repeat|Simple_repeat	10965.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	6.29	6.45	0.0	4.72	7.93	1.61	5.28	2.21	2.5
Merged-chr19-5956851-3	chr19	5956355	5957355	+	668.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164057, intron 4 of 17)	intron (NM_001164057, intron 4 of 17)	7351.0	NM_001164057	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	4.0	2.76	5.55	6.75	1.87	1.61	4.22	1.77	3.75
Merged-chr9-44479079-3	chr9	44478492	44479492	+	668.083313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	76.66	65.43	56.42	41.83	42.92	81.99	60.2	62.79	72.45
Merged-chr10-19107697-1	chr10	19107197	19108197	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-34052.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	22.88	18.43	4.62	23.62	10.73	7.23	42.25	21.22	11.87
Merged-chr3-134339292-1	chr3	134338792	134339792	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84343.0	NR_040600	75208.0	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	7.44	4.15	8.32	8.77	2.33	10.45	6.34	6.19	6.25
Merged-chr1-156461181-1	chr1	156460681	156461681	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	13147.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	43.48	51.15	29.6	56.68	49.45	42.6	15.84	12.82	16.24
Merged-chr11-37046867-1	chr11	37046367	37047367	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-102626.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	3.43	3.69	0.0	2.02	5.13	0.0	4.22	3.54	0.0
Merged-chr15-5456799-1	chr15	5456299	5457299	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-39519.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	2.86	4.15	7.4	4.72	3.73	2.41	12.67	7.07	10.62
Merged-chr9-40466820-1	chr9	40466320	40467320	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 1 of 20)	T-rich|Low_complexity|Low_complexity	-11056.0	NM_172768	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	2.29	4.15	4.62	4.05	1.87	1.61	0.0	0.0	3.75
Merged-chr2-147177799-1	chr2	147177299	147178299	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001077632, exon 3 of 3)	exon (NM_001077632, exon 3 of 3)	-6284.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	6.29	0.92	0.0	3.37	2.33	1.61	0.0	2.65	3.75
Merged-chr4-150869943-1	chr4	150869443	150870443	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	14873.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	22.31	8.75	34.22	10.8	19.59	8.04	6.34	6.63	2.5
Merged-chr10-67535536-3	chr10	67535015	67536015	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2354.0	NM_010118	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	6.86	5.53	0.0	5.4	0.93	1.61	1.06	4.86	1.25
Merged-chr15-91253194-2	chr15	91252692	91253692	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-61185.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	2.86	11.98	1.85	2.02	8.4	3.22	11.62	11.5	9.99
Merged-chrX-77834625-1	chrX	77834125	77835125	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx2A|LINE|L1	18875.0	NM_017471	54192.0	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	3.43	6.45	3.7	3.37	0.47	1.61	1.06	3.54	0.0
Merged-chr8-84436112-1	chr8	84435612	84436612	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	20748.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	8.01	8.29	18.5	14.17	11.2	12.06	0.0	0.0	2.5
Merged-chr10-128284222-1	chr10	128283722	128284722	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019963, intron 19 of 23)	intron (NM_019963, intron 19 of 23)	13724.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	5.15	2.76	8.32	4.05	3.73	1.61	4.22	2.65	5.0
Merged-chr13-99344032-2	chr13	99343511	99344511	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	667.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	37.18	28.57	27.75	54.65	60.18	44.21	51.75	61.02	34.97
Merged-chr14-70403197-1	chr14	70402697	70403697	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021308, intron 10 of 22)	intron (NM_021308, intron 10 of 22)	25897.0	NM_021308	57746.0	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	34.32	29.49	14.8	46.56	21.93	16.88	30.63	27.41	13.74
Merged-chr3-67062858-1	chr3	67062358	67063358	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356280, intron 3 of 7)	intron (NM_001356280, intron 3 of 7)	76891.0	NM_001356273	66880.0	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	4.58	4.15	3.7	3.37	1.4	1.61	9.51	3.98	5.0
Merged-chr14-118662836-1	chr14	118662336	118663336	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033336, intron 3 of 30)	MTE2b|LTR|ERVL-MaLR	14095.0	NM_001163675	239273.0	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	21.74	24.42	20.35	20.24	12.6	8.84	35.91	18.57	18.74
Merged-chr16-97998238-1	chr16	97997738	97998738	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362093, intron 1 of 3)	intron (NM_001362093, intron 1 of 3)	891.0	NR_130962	245305.0	Mm.148033	NM_001362093		B230307C23Rik	8030444G23Rik|EG245305	RIKEN cDNA B230307C23 gene	protein-coding	41.19	60.36	43.47	33.74	24.26	24.92	54.92	45.54	27.48
Merged-chr7-26248236-1	chr7	26247736	26248736	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18595.0	NM_001167540	100312477.0	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	22.88	10.6	18.5	10.12	16.33	29.74	23.24	17.69	8.12
Merged-chrX-102066293-1	chrX	102065793	102066793	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001278534)	TTS (NM_001278534)	5014.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	2.86	3.23	3.7	1.35	0.0	0.0	2.11	1.77	2.5
Merged-chr13-62854865-1	chr13	62854365	62855365	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007994, intron 2 of 6)	intron (NM_007994, intron 2 of 6)	3505.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	6.86	3.69	0.0	4.05	1.4	2.41	2.11	0.44	3.75
Merged-chr16-30689809-1	chr16	30689309	30690309	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	90086.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	15.45	10.6	15.72	10.8	7.93	8.04	81.33	88.88	48.71
Merged-chr6-5290998-2	chr6	5290496	5291496	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183308, intron 1 of 8)	intron (NM_183308, intron 1 of 8)	7377.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	13.73	5.99	12.95	14.84	8.86	14.47	10.56	5.75	6.25
Merged-chr9-90260317-1	chr9	90259817	90260817	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	10452.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	47.48	49.76	59.2	41.83	31.72	40.99	57.03	42.01	44.34
Merged-chr4-151995465-1	chr4	151994965	151995965	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172705, intron 1 of 3)	CpG	714.0	NM_172705	230936.0	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	40.04	29.95	72.15	39.81	27.52	67.52	51.75	25.65	21.86
Merged-chr10-115372363-1	chr10	115371863	115372863	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025780, exon 3 of 3)	3' UTR (NM_025780, exon 3 of 3)	-9862.0	NM_001359472	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	10.3	11.52	9.25	3.37	8.86	0.0	8.45	8.4	7.49
Merged-chr3-97879454-2	chr3	97878981	97879981	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	9226.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.43	2.3	3.7	2.7	2.33	4.82	2.11	0.44	3.75
Merged-chr5-147866312-3	chr5	147865811	147866811	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025624, intron 2 of 5)	ORR1A2-int|LTR|ERVL-MaLR	5683.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	12.01	13.36	9.25	10.12	10.73	6.43	10.56	6.19	13.12
Merged-chr1-21856555-1	chr1	21856055	21857055	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023872, intron 1 of 13)	intron (NM_023872, intron 1 of 13)	105387.0	NM_001160139	226922.0	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	8.01	5.07	10.17	7.42	4.67	0.0	1.06	1.33	5.0
Merged-chr2-153562487-1	chr2	153561987	153562987	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-32516.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.72	5.07	5.55	10.8	2.33	6.43	13.73	4.86	6.25
Merged-chr4-126252808-1	chr4	126252308	126253308	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145970, intron 1 of 16)	intron (NM_001145970, intron 1 of 16)	3511.0	NM_144941	245877.0	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	63.5	68.66	77.7	55.33	44.32	85.2	79.21	76.49	50.59
Merged-chr6-51567827-2	chr6	51567329	51568329	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361577, intron 2 of 6)	intron (NM_001361577, intron 2 of 6)	22536.0	NM_001361577	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	28.03	14.28	9.25	14.17	11.66	4.82	8.45	4.42	7.49
Merged-chr18-65305021-2	chr18	65304568	65305568	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037294, exon 5 of 13)	exon (NM_001037294, exon 5 of 13)	56207.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	7.44	4.15	0.0	7.42	7.46	4.82	0.0	0.44	7.49
Merged-chr2-102161424-1	chr2	102160924	102161924	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	25036.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.57	1.84	0.0	6.07	14.93	12.86	3.17	3.1	7.49
Merged-chr4-72478073-1	chr4	72477573	72478573	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	276829.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	1.72	1.84	0.0	1.35	5.6	0.0	2.11	0.88	1.25
Merged-chr14-33246098-1	chr14	33245598	33246598	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	RLTR16|LTR|ERVK	29275.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	20.02	30.87	12.95	43.18	31.72	33.76	9.51	3.54	5.62
Merged-chr10-121472619-1	chr10	121472119	121473119	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	ID_B1|SINE|B4	3631.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	37.76	59.44	46.25	49.25	54.11	56.27	31.69	32.28	19.98
Merged-chr18-46493322-3	chr18	46492817	46493817	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27501.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	16.59	8.29	4.62	12.82	4.67	8.84	13.73	12.82	12.49
Merged-chr3-89387812-1	chr3	89387312	89388312	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001355206)	promoter-TSS (NM_001355206)	-141.0	NM_001355206	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	6.86	9.68	27.75	11.47	7.0	25.72	13.73	3.1	23.11
Merged-chr9-108561055-1	chr9	108560555	108561555	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001114119)	TTS (NM_001114119)	554.0	NM_011830	23918.0	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine monophosphate dehydrogenase 2	protein-coding	85.24	93.08	84.17	61.4	56.45	54.66	61.26	87.55	58.08
Merged-chr19-55825667-2	chr19	55825184	55826184	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-69637.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	16.02	7.37	6.47	14.84	5.13	12.86	4.22	3.98	10.62
Merged-chr11-53470085-2	chr11	53469595	53470595	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10100.0	NM_183173	237761.0	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	4.0	7.37	5.55	2.02	4.67	6.43	4.22	0.44	2.5
Merged-chr6-5044584-1	chr6	5044084	5045084	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	141264.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.58	11.52	16.65	3.37	11.2	6.43	5.28	8.84	10.62
Merged-chr5-99239623-1	chr5	99239123	99240123	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13304.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	40.62	37.78	42.55	29.69	18.19	42.6	33.8	30.95	24.98
Merged-chr2-143838837-1	chr2	143838337	143839337	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 5 of 7)	intron (NM_001291061, intron 5 of 7)	24336.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	6.29	1.38	1.85	3.37	6.53	6.43	5.28	1.33	9.37
Merged-chr5-5381257-1	chr5	5380757	5381757	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1006.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	17.73	14.28	26.82	14.84	9.33	6.43	28.52	8.4	8.74
Merged-chr3-109169336-3	chr3	109168837	109169837	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172685)	TTS (NM_172685)	46188.0	NM_172685	229731.0	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	4.58	5.53	7.4	8.77	6.06	8.04	5.28	1.77	6.87
Merged-chr15-59865319-1	chr15	59864819	59865819	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70360.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	38.33	40.09	22.2	46.56	35.92	57.87	31.69	42.45	16.86
Merged-chr3-27186323-1	chr3	27185823	27186823	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	3319.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	7.44	12.44	12.95	10.12	18.66	11.25	16.9	15.03	11.24
Merged-chr14-75899674-1	chr14	75899174	75900174	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026816, intron 7 of 7)	intron (NM_026816, intron 7 of 7)	51751.0	NR_028481	100303751.0	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	5.72	1.38	1.85	6.75	0.93	0.0	6.34	2.65	5.0
Merged-chr12-116425601-1	chr12	116425101	116426101	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133762, intron 11 of 28)	RSINE1|SINE|B4	20199.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	5.15	3.69	3.7	0.67	2.33	3.22	1.06	5.31	0.62
Merged-chr11-101170506-1	chr11	101170006	101171006	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146030, intron 1 of 12)	CpG	796.0	NM_146030	217198.0	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	12.01	8.29	11.1	16.87	9.33	16.08	13.73	10.17	9.37
Merged-chr1-189806735-1	chr1	189806235	189807235	+	668.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	ORR1E|LTR|ERVL-MaLR	78467.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	1.72	1.84	1.85	0.0	0.93	0.0	17.96	7.07	3.12
Merged-chr2-63504102-1	chr2	63503602	63504602	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71186.0	NR_152174	667257.0	Mm.417007	NR_152174		Gm8541	EG667257	predicted gene 8541	ncRNA	4.0	3.23	1.85	1.35	4.67	1.61	2.11	5.31	0.0
Merged-chr18-38944650-1	chr18	38944150	38945150	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 4 of 4)	intron (NM_001033789, intron 4 of 4)	-25951.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	8.58	7.83	7.4	11.47	7.0	13.66	6.34	3.54	4.37
Merged-chr1-36275806-1	chr1	36275306	36276306	+	668.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2381.0	NM_153408	214854.0	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	9.15	11.06	1.85	3.37	3.27	11.25	6.34	1.77	4.37
Merged-chr6-83635365-1	chr6	83634865	83635865	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	20751.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	92.67	103.22	89.72	89.74	109.16	172.81	114.07	116.29	71.2
Merged-chr16-19733124-1	chr16	19732624	19733624	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26759.0	NM_177356	239739.0	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	4.58	6.91	5.55	1.35	6.53	1.61	5.28	0.88	6.25
Merged-chr2-26657475-1	chr2	26656975	26657975	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13807.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	8.01	5.99	3.7	6.07	7.0	1.61	7.39	5.31	1.87
Merged-chr4-130827527-1	chr4	130827027	130828027	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34990.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	15.45	8.75	12.02	13.49	5.6	20.9	14.79	8.84	14.36
Merged-chr16-87675868-1	chr16	87675368	87676368	+	668.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23086.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.86	5.99	0.0	12.14	7.93	14.47	8.45	3.98	5.0
Merged-chr6-115362161-2	chr6	115361637	115362637	+	667.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001308354)	promoter-TSS (NM_001308354)	-212.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	53.2	35.48	25.9	39.81	53.65	26.53	40.14	26.09	6.25
Merged-chr6-72599346-3	chr6	72598849	72599849	+	667.9111330000001	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144917)	promoter-TSS (NM_144917)	721.0	NM_026159	67442.0	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	43.48	69.12	63.82	60.72	57.85	68.32	60.2	50.85	49.34
Merged-chr3-144381164-3	chr3	144380660	144381660	+	667.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-175905.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.58	0.92	3.7	4.05	1.87	3.22	4.22	2.21	3.75
Merged-chr17-78245711-3	chr17	78245224	78246224	+	667.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	45476.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	33.75	43.77	35.15	33.74	18.19	20.09	28.52	30.95	23.73
Merged-chr16-3231784-2	chr16	3231298	3232298	+	667.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-360600.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	3.43	5.53	20.35	4.72	3.27	4.02	0.0	2.65	7.49
Merged-chr4-33310989-2	chr4	33310460	33311460	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 1 of 15)	intron (NM_001305273, intron 1 of 15)	649.0	NM_001305273	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	77.8	97.69	70.3	83.66	96.57	62.7	132.02	99.05	52.46
Merged-chr19-46392284-2	chr19	46391781	46392781	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	B3|SINE|B2	3454.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	8.58	6.91	7.4	4.72	3.27	4.82	7.39	2.65	7.49
Merged-chr11-114523477-2	chr11	114522997	114523997	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74637.0	NR_027643	319819.0	Mm.50754	NM_177008	ENSMUSG00000062391	4932435O22Rik	-	RIKEN cDNA 4932435O22 gene	ncRNA	1.72	0.46	0.0	1.35	2.33	4.82	23.24	18.57	14.99
Merged-chr1-186676228-2	chr1	186675681	186676681	+	667.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	29808.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	4.0	3.69	1.85	5.4	7.46	3.22	2.11	0.0	8.74
Merged-chr8-35596670-3	chr8	35596198	35597198	+	667.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-7678.0	NR_040376	100504714.0	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	18.31	20.74	38.85	26.31	27.06	24.11	33.8	30.51	20.61
Merged-chr6-117166970-3	chr6	117166478	117167478	+	667.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1557.0	NM_001012477	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	2.29	1.38	0.0	1.35	0.47	4.82	3.17	0.0	2.5
Merged-chr8-70376503-3	chr8	70375942	70376942	+	667.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016685, exon 8 of 19)	exon (NM_016685, exon 8 of 19)	2894.0	NM_016685	12845.0	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.57	4.61	5.55	16.19	7.0	4.82	16.9	11.94	0.62
Merged-chr10-80948785-3	chr10	80948283	80949283	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010319, exon 4 of 4)	3' UTR (NM_010319, exon 4 of 4)	18692.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	2.29	2.3	3.7	4.72	2.8	1.61	6.34	0.88	3.75
Merged-chr3-86976698-3	chr3	86976180	86977180	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9906.0	NM_001289449	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	3.43	5.07	0.0	3.37	2.33	2.41	1.06	2.65	1.25
Merged-chr7-25789529-3	chr7	25789017	25790017	+	667.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190974)	promoter-TSS (NM_001190974)	-784.0	NM_001190975	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	30.89	22.58	44.4	32.39	19.59	55.46	53.87	26.53	38.1
Merged-chr10-81525162-1	chr10	81524662	81525662	+	667.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010304)	promoter-TSS (NM_010304)	-937.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	18.31	17.51	33.3	26.31	27.06	58.68	46.47	54.39	34.35
Merged-chr16-8459375-1	chr16	8458875	8459875	+	667.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11438.0	NM_146247	239706.0	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	2.29	2.76	0.0	2.02	2.33	3.22	0.0	0.0	0.0
Merged-chr1-60042927-2	chr1	60042412	60043412	+	667.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_027407, exon 1 of 11)	5' UTR (NM_027407, exon 1 of 11)	210.0	NM_001357296	70375.0	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15|b2b3465Clo	islet cell autoantigen 1-like	protein-coding	7.44	3.23	4.62	3.37	2.33	7.23	6.34	3.1	0.0
Merged-chr7-110679979-2	chr7	110679476	110680476	+	667.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	52319.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	8.58	10.14	11.1	12.82	9.33	11.25	12.67	12.38	11.24
Merged-chr2-169929942-2	chr2	169929389	169930389	+	667.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33298.0	NR_131974	446211.0	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	51.48	52.07	39.77	26.31	23.33	38.58	73.93	93.74	58.08
Merged-chr17-70751373-2	chr17	70750927	70751927	+	667.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	95350.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	54.92	47.92	42.55	42.51	40.59	41.8	61.26	60.13	52.46
Merged-chr8-84069986-3	chr8	84069487	84070487	+	667.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	3151.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	84.66	84.78	74.0	78.94	73.24	94.85	46.47	58.37	42.47
Merged-chr2-120037981-2	chr2	120037485	120038485	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145378, intron 11 of 19)	intron (NM_145378, intron 11 of 19)	4552.0	NM_145378	211429.0	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	13.16	5.07	6.47	9.45	6.53	9.65	4.22	2.21	7.49
Merged-chr17-34310005-2	chr17	34309522	34310522	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	B3A|SINE|B2	4155.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	14.87	7.83	23.12	6.07	0.47	8.04	16.9	15.03	10.62
Merged-chr3-65586085-2	chr3	65585574	65586574	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56660.0	NR_027955	71004.0	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	5.72	6.45	0.0	9.45	6.06	3.22	13.73	8.4	4.37
Merged-chr1-66838607-1	chr1	66838107	66839107	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007381, intron 8 of 10)	intron (NM_007381, intron 8 of 10)	-21012.0	NM_001122738	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	58.92	72.8	27.75	14.17	27.52	21.7	35.91	32.72	11.24
Merged-chr4-16160634-1	chr4	16160134	16161134	+	667.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	3009.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	81.8	73.73	74.0	74.22	48.98	57.87	58.09	61.46	52.46
Merged-chr15-99099288-2	chr15	99098800	99099800	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176835)	promoter-TSS (NM_176835)	-184.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	8.01	3.69	1.85	4.05	1.87	1.61	2.11	3.54	1.87
Merged-chr1-177521314-2	chr1	177520807	177521807	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75486.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	2.86	10.6	3.7	6.07	8.86	8.04	9.51	8.4	3.75
Merged-chr15-54953704-1	chr15	54953204	54954204	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	756.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	8.58	3.23	0.0	1.35	1.87	2.41	2.11	2.65	0.0
Merged-chr2-180920083-3	chr2	180919563	180920563	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173761, intron 2 of 4)	intron (NM_173761, intron 2 of 4)	873.0	NM_173761	228994.0	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	106.97	136.85	82.32	102.56	138.09	86.81	105.62	119.83	76.19
Merged-chr18-17623146-1	chr18	17622646	17623646	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42156.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	4.58	2.76	3.7	0.0	1.87	3.22	0.0	2.65	5.0
Merged-chr11-54439607-1	chr11	54439107	54440107	+	667.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1428.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	208.23	243.75	110.07	230.75	230.46	111.73	221.8	276.8	79.32
Merged-chr5-99328526-1	chr5	99328026	99329026	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	-75599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	48.05	45.16	30.52	38.46	37.79	49.83	20.07	26.09	23.73
Merged-chr9-37029967-2	chr9	37029473	37030473	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029838, intron 2 of 12)	intron (NM_001029838, intron 2 of 12)	117349.0	NM_148950	208076.0	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	2.86	5.99	1.85	2.7	6.06	8.04	2.11	0.44	1.25
Merged-chrX-101642344-1	chrX	101641844	101642844	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290535, intron 1 of 21)	intron (NM_001290535, intron 1 of 21)	2126.0	NM_001290535	108155.0	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	28.03	47.92	33.3	39.81	51.32	53.85	61.26	54.39	16.24
Merged-chr6-99094746-1	chr6	99094246	99095246	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053202, intron 4 of 18)	intron (NM_053202, intron 4 of 18)	-66448.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	25.74	7.83	0.0	16.19	12.13	6.43	13.73	2.65	3.75
Merged-chr14-63164914-2	chr14	63164419	63165419	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360211, intron 1 of 7)	intron (NM_001360211, intron 1 of 7)	12968.0	NM_001360211	14137.0	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	6.86	1.84	0.0	8.1	2.8	8.84	7.39	2.21	1.25
Merged-chr4-139178618-2	chr4	139178123	139179123	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_033543, exon 2 of 3)	non-coding (NR_033543, exon 2 of 3)	2032.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	10.87	8.75	16.65	4.72	8.4	15.27	15.84	19.46	13.74
Merged-chr2-154402157-2	chr2	154401652	154402652	+	667.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009228, intron 2 of 7)	B3|SINE|B2	5932.0	NM_009228	20648.0	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	2.29	4.61	3.7	6.07	7.0	6.43	6.34	5.31	5.0
Merged-chr6-115762129-2	chr6	115761647	115762647	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168256, intron 1 of 11)	CT-rich|Low_complexity|Low_complexity	319.0	NM_001168257	94346.0	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	26.89	25.8	22.2	24.96	10.73	29.74	28.52	29.63	31.85
Merged-chr11-58030099-1	chr11	58029599	58030599	+	667.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	21035.0	NM_028451	73158.0	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	18.31	14.75	5.55	11.47	9.33	12.06	11.62	2.65	10.62
Merged-chr7-31172464-3	chr7	31171949	31172949	+	667.477783	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	10091.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	3.43	2.3	7.4	2.02	2.8	6.43	5.28	0.88	0.0
Merged-chr6-141075432-3	chr6	141074928	141075928	+	667.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-173841.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	7.44	2.3	3.7	4.05	1.87	4.82	5.28	4.86	1.25
Merged-chr13-62859419-3	chr13	62858929	62859929	+	667.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-1059.0	NM_007994	14120.0	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	11.44	8.29	25.9	11.47	7.0	19.29	21.12	19.9	18.74
Merged-chr10-18431053-2	chr10	18430543	18431543	+	667.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	23368.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	4.58	7.37	7.4	12.14	8.4	3.22	4.22	5.75	0.0
Merged-chr2-9889637-2	chr2	9889089	9890089	+	667.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040511)	promoter-TSS (NR_040511)	-49.0	NR_040511	77682.0	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	5.15	2.3	3.7	4.72	4.67	0.0	2.11	3.54	8.12
Merged-chr14-73117128-2	chr14	73116638	73117638	+	667.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25372.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	13.73	11.06	15.72	20.92	9.8	11.25	15.84	13.27	6.87
Merged-chr8-8198606-1	chr8	8198106	8199106	+	667.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	462167.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.72	4.15	8.32	3.37	5.6	1.61	5.28	4.86	3.75
Merged-chr10-116949895-3	chr10	116949384	116950384	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038025)	promoter-TSS (NR_038025)	569.0	NM_001359645	216363.0	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	12.59	4.61	11.1	16.87	4.2	19.29	14.79	4.42	11.24
Merged-chr2-59688897-1	chr2	59688397	59689397	+	667.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290659, intron 1 of 25)	intron (NM_001290659, intron 1 of 25)	42128.0	NM_001290659	66860.0	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	5.15	8.75	5.55	8.1	5.6	0.0	4.22	3.1	5.0
Merged-chr12-99393684-1	chr12	99393184	99394184	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	56390.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	122.99	98.15	77.7	120.77	81.17	56.27	78.16	74.28	54.96
Merged-chr11-51821016-3	chr11	51820518	51821518	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 11 of 12)	intron (NM_001357588, intron 11 of 12)	36463.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	4.58	6.45	18.5	12.14	7.46	8.04	8.45	4.42	8.12
Merged-chr17-47792671-3	chr17	47792181	47793181	+	667.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001161723)	TTS (NM_001161723)	6937.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	72.08	63.59	17.57	64.1	60.65	31.35	67.6	82.24	32.48
Merged-chr14-64882836-3	chr14	64882342	64883342	+	667.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	67015.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	30.32	51.15	30.52	29.69	20.99	44.21	29.57	22.55	39.97
Merged-chr19-60757937-2	chr19	60757442	60758442	+	667.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178421, exon 1 of 1)	3' UTR (NM_178421, exon 1 of 1)	1955.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	8.01	2.3	1.85	9.45	6.53	6.43	3.17	1.77	1.25
Merged-chr13-112661291-2	chr13	112660749	112661749	+	667.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178746, intron 1 of 14)	intron (NM_178746, intron 1 of 14)	483.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	48.62	24.88	16.65	41.83	36.39	37.78	68.65	76.94	31.23
Merged-chr4-136224952-2	chr4	136224459	136225459	+	667.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008232, intron 1 of 24)	intron (NM_001008232, intron 1 of 24)	18594.0	NM_001355698	230837.0	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	5.72	6.45	6.47	11.47	11.66	12.06	5.28	2.21	2.5
Merged-chr4-117139404-3	chr4	117138923	117139923	+	667.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5460.0	NM_001313916	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	11.44	10.6	7.4	14.17	11.66	24.11	11.62	9.73	12.49
Merged-chr10-61151625-2	chr10	61151128	61152128	+	667.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3944.0	NM_001316674	20397.0	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	8.58	6.91	6.47	9.45	7.93	10.45	9.51	2.21	3.75
Merged-chr7-16149434-2	chr7	16148939	16149939	+	667.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347561, intron 4 of 8)	intron (NM_001347561, intron 4 of 8)	19613.0	NM_148946	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	7.44	4.15	7.4	7.42	3.73	3.22	3.17	0.88	3.75
Merged-chr16-12089844-3	chr16	12089352	12090352	+	667.150024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	intron (NM_028277, intron 2 of 4)	105739.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	12.01	10.6	7.4	12.14	8.4	8.04	10.56	7.07	6.25
Merged-chr5-145185349-2	chr5	145184864	145185864	+	667.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020582, intron 2 of 3)	RLTR11B|LTR|ERVK	6228.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	10.87	12.9	32.37	6.75	9.8	23.31	14.79	14.15	15.61
Merged-chr11-3371470-3	chr11	3371026	3372026	+	667.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361623)	promoter-TSS (NM_001361623)	-122.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	2.86	4.61	1.85	6.75	5.6	7.23	3.17	0.44	5.62
Merged-chr11-49087072-3	chr11	49086614	49087614	+	667.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271676)	promoter-TSS (NM_001271676)	97.0	NM_008330	15953.0	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	217.95	203.67	116.54	171.38	180.07	146.29	226.02	227.72	144.27
Merged-chr17-23645055-1	chr17	23644555	23645555	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001320258, exon 1 of 10)	5' UTR (NM_001320258, exon 1 of 10)	214.0	NM_001033339	240047.0	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	7.44	2.76	5.55	4.72	3.73	3.22	1.06	1.77	1.25
Merged-chr11-62554164-1	chr11	62553664	62554664	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_002875)	TTS (NR_002875)	2433.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	34.32	31.79	25.9	24.29	27.99	27.33	27.46	23.43	24.36
Merged-chr10-78441038-2	chr10	78440519	78441519	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172134, intron 10 of 10)	intron (NM_172134, intron 10 of 10)	4138.0	NR_105873	102466762.0		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	12.01	17.05	16.65	12.14	16.33	24.92	9.51	11.5	10.62
Merged-chr10-128891331-2	chr10	128890878	128891878	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010272, exon 1 of 3)	exon (NM_010272, exon 1 of 3)	340.0	NM_010272	14561.0	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	3.43	0.46	0.0	5.4	0.47	2.41	4.22	1.33	1.87
Merged-chr6-5163849-1	chr6	5163349	5164349	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181595, exon 16 of 16)	3' UTR (NM_181595, exon 16 of 16)	30097.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	10.3	3.23	24.05	6.75	3.73	17.68	5.28	6.19	8.74
Merged-chr11-43223763-1	chr11	43223263	43224263	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176999, intron 14 of 22)	intron (NM_176999, intron 14 of 22)	73886.0	NM_176999	319767.0	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	10.3	13.82	8.32	12.82	10.26	6.43	20.07	15.92	13.74
Merged-chr14-57665913-1	chr14	57665413	57666413	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020506)	promoter-TSS (NM_020506)	-957.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	24.6	36.4	34.22	24.29	34.99	53.85	26.4	25.65	20.61
Merged-chr3-116804680-1	chr3	116804180	116805180	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362367, intron 2 of 27)	intron (NM_001362367, intron 2 of 27)	3486.0	NM_001362367	77559.0	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	2.29	3.69	1.85	2.02	2.8	3.22	4.22	3.1	2.5
Merged-chr17-43458822-1	chr17	43458322	43459322	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081178, exon 21 of 21)	3' UTR (NM_001081178, exon 21 of 21)	43951.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	3.43	2.3	0.0	4.05	0.93	5.63	2.11	1.77	2.5
Merged-chr12-3661419-3	chr12	3660857	3661857	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	88373.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	8.58	9.68	9.25	13.49	11.2	8.84	11.62	7.07	2.5
Merged-chr17-84156942-2	chr17	84156443	84157443	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	31004.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	8.58	6.91	9.25	8.1	7.46	8.04	3.17	4.86	6.25
Merged-chr2-90965888-1	chr2	90965388	90966388	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244891, intron 2 of 14)	intron (NM_001244891, intron 2 of 14)	25491.0	NM_017368	13046.0	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	18.88	16.59	10.17	26.99	22.86	20.09	10.56	7.96	10.62
Merged-chr10-41910904-1	chr10	41910404	41911404	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	23465.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	24.03	23.04	13.87	21.59	22.39	4.82	22.18	24.76	17.49
Merged-chr6-117863121-1	chr6	117862621	117863621	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360938, exon 2 of 5)	5' UTR (NM_001360938, exon 2 of 5)	240.0	NM_001001792	22685.0	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	10.87	5.53	6.47	6.75	22.39	12.06	12.67	7.52	5.62
Merged-chr6-134266373-1	chr6	134265873	134266873	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007961, exon 8 of 8)	exon (NM_007961, exon 8 of 8)	-129956.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	10.3	11.98	11.1	13.49	6.06	8.84	3.17	1.77	11.24
Merged-chr4-43286994-1	chr4	43286494	43287494	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 2 of 28)	B1_Mus1|SINE|Alu	19835.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	71.51	82.48	66.6	51.95	42.45	45.01	45.42	38.47	37.47
Merged-chr13-12369303-1	chr13	12368803	12369803	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26072.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	21.74	20.27	3.7	52.63	54.58	23.31	33.8	41.56	14.99
Merged-chr12-3861568-2	chr12	3861069	3862069	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045884, exon 3 of 4)	non-coding (NR_045884, exon 3 of 4)	675.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	27.46	22.12	27.75	33.74	26.12	37.78	44.36	29.18	17.49
Merged-chr2-156542923-3	chr2	156542432	156543432	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013510, exon 22 of 22)	3' UTR (NM_013510, exon 22 of 22)	-4644.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	20.59	18.43	19.42	11.47	9.8	9.65	14.79	17.24	10.62
Merged-chr4-156031839-1	chr4	156031339	156032339	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5517.0	NM_021985	21936.0	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	16.02	10.6	26.82	24.96	14.0	18.49	51.75	59.25	31.85
Merged-chr1-93507136-2	chr1	93506648	93507648	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159719, intron 12 of 12)	intron (NM_001159719, intron 12 of 12)	-4956.0	NM_145519	227377.0	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	11.44	9.22	9.25	5.4	3.27	1.61	5.28	6.19	5.62
Merged-chr11-115250430-1	chr11	115249930	115250930	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	16813.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	2.29	1.38	1.85	4.05	3.73	0.0	3.17	2.65	1.25
Merged-chr13-70847165-1	chr13	70846665	70847665	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5354.0	NR_137640	271127.0	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	1.72	1.38	1.85	1.35	3.73	2.41	4.22	3.98	0.0
Merged-chr8-120598932-1	chr8	120598432	120599432	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9857.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	8.58	5.53	1.85	2.7	6.53	7.23	13.73	17.24	11.87
Merged-chr8-125850016-1	chr8	125849516	125850516	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175561, intron 15 of 33)	intron (NM_175561, intron 15 of 33)	-47898.0	NR_155422	102632990.0	Mm.429446	NR_155422		A730098A19Rik	-	RIKEN cDNA A730098A19 gene	ncRNA	2.29	3.69	1.85	2.02	4.2	9.65	6.34	3.54	5.62
Merged-chr15-11003206-1	chr15	11002706	11003706	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053077, intron 2 of 6)	intron (NM_053077, intron 2 of 6)	2485.0	NM_053077	22293.0	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	2.29	2.3	5.55	4.05	1.4	5.63	0.0	2.65	0.0
Merged-chr13-107856816-1	chr13	107856316	107857316	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	33248.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	118.99	134.09	87.87	117.4	74.64	51.44	177.44	208.7	74.32
Merged-chr17-57279739-2	chr17	57279264	57280264	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 1 of 25)	CT-rich|Low_complexity|Low_complexity	664.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	204.22	170.95	180.37	192.29	116.63	189.69	265.1	238.33	116.16
Merged-chr9-15493791-1	chr9	15493291	15494291	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 1 of 2)	CpG	359.0	NM_001359604	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	3.43	1.84	3.7	8.1	2.33	8.04	1.06	0.88	1.25
Merged-chr6-32780874-1	chr6	32780374	32781374	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-192682.0	NM_175750	243743.0	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	1.72	0.92	6.47	3.37	0.47	1.61	3.17	2.65	2.5
Merged-chr7-82649237-1	chr7	82648737	82649737	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177894)	promoter-TSS (NM_177894)	623.0	NM_175317	101592.0	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	36.61	34.56	31.45	33.06	25.19	29.74	51.75	32.72	22.48
Merged-chr13-113613117-2	chr13	113612598	113613598	+	667.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	5466.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	33.75	23.5	8.32	26.31	14.93	32.15	20.07	20.34	21.23
Merged-chr12-101957629-1	chr12	101957129	101958129	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029705, intron 1 of 10)	intron (NM_029705, intron 1 of 10)	614.0	NM_029705	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	139.01	118.42	108.22	118.75	115.23	158.35	135.19	152.55	108.04
Merged-chr5-90759493-1	chr5	90758993	90759993	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009141, exon 1 of 4)	exon (NM_009141, exon 1 of 4)	195.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	5.15	4.15	5.55	3.37	0.93	7.23	1.06	1.77	0.0
Merged-chr3-144232601-1	chr3	144232101	144233101	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27346.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.86	9.68	0.0	6.75	4.2	4.02	5.28	3.1	3.75
Merged-chr7-43883777-1	chr7	43883277	43884277	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019928, intron 3 of 5)	intron (NM_019928, intron 3 of 5)	2605.0	NM_019928	56640.0	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	5.15	0.46	1.85	2.7	0.0	0.0	4.22	0.88	1.87
Merged-chr17-71254910-2	chr17	71254441	71255441	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357337, intron 7 of 7)	AT_rich|Low_complexity|Low_complexity	50287.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	10.3	8.75	14.8	18.22	6.06	14.47	6.34	4.42	1.25
Merged-chr10-127123633-2	chr10	127123131	127124131	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2471.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	5.72	1.84	0.0	3.37	3.73	7.23	4.22	1.77	1.25
Merged-chr9-119249388-1	chr9	119248888	119249888	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 13 of 18)	intron (NM_001359582, intron 13 of 18)	-17696.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	22.31	18.89	11.1	16.19	16.79	23.31	11.62	8.84	14.36
Merged-chr4-155216834-2	chr4	155216326	155217326	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	5709.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	13.16	16.59	6.47	24.96	20.53	16.88	35.91	22.11	8.74
Merged-chr1-39615597-1	chr1	39615097	39616097	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	35585.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	14.3	10.6	0.0	17.54	13.53	23.31	11.62	5.75	13.74
Merged-chr1-118477143-1	chr1	118476643	118477643	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 8 of 39)	B3|SINE|B2	-17878.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	8.01	1.84	1.85	5.4	1.87	4.82	6.34	4.42	2.5
Merged-chr1-155532942-1	chr1	155532442	155533442	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5831.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	9.15	9.68	3.7	6.75	4.67	8.04	10.56	8.4	2.5
Merged-chr7-80353990-1	chr7	80353490	80354490	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172903, intron 21 of 23)	intron (NM_172903, intron 21 of 23)	10853.0	NM_026812	68695.0	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	10.87	7.83	24.05	10.8	12.6	25.72	2.11	5.31	5.0
Merged-chr17-67176052-1	chr17	67175552	67176552	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	intron (NM_001357625, intron 2 of 32)	-149817.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	4.58	6.45	10.17	4.72	4.67	1.61	9.51	4.86	5.62
Merged-chr9-13311264-1	chr9	13310764	13311764	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64308.0	NM_025534	66396.0	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	16.02	18.43	11.1	17.54	16.79	11.25	5.28	6.19	4.37
Merged-chr2-35257142-1	chr2	35256642	35257642	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206368, intron 1 of 16)	intron (NM_001206368, intron 1 of 16)	783.0	NM_001206368	227753.0	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	12.59	9.68	8.32	5.4	7.0	6.43	4.22	3.1	5.0
Merged-chr15-68319110-1	chr15	68318610	68319610	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18400.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	6.29	5.53	5.55	6.07	5.6	11.25	27.46	25.2	20.61
Merged-chr3-89282162-1	chr3	89281662	89282662	+	667.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1211.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	13.73	5.53	2.77	8.77	1.87	6.43	5.28	2.65	6.25
Merged-chr2-27704159-1	chr2	27703659	27704659	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	-5133.0	NM_001290481	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	56.06	43.77	56.42	39.81	39.19	65.11	45.42	34.49	38.72
Merged-chr15-81948769-2	chr15	81948284	81949284	+	667.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145473, intron 3 of 3)	intron (NM_145473, intron 3 of 3)	12025.0	NM_145473	105859.0	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	4.0	1.38	3.7	1.35	1.4	3.22	7.39	2.65	9.99
Merged-chr11-98859292-3	chr11	98858786	98859786	+	666.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4312.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	8.01	1.38	0.0	10.8	1.87	1.61	6.34	0.88	0.0
Merged-chr9-98958005-3	chr9	98957504	98958504	+	666.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012020, exon 1 of 1)	3' UTR (NM_012020, exon 1 of 1)	2397.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	5.72	2.3	0.0	3.37	0.93	0.0	4.22	0.44	0.0
Merged-chr2-35336373-2	chr2	35335913	35336913	+	666.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013515, intron 1 of 6)	intron (NM_013515, intron 1 of 6)	596.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	81.23	104.14	85.1	108.63	92.37	120.57	114.07	124.69	84.94
Merged-chr3-142598104-2	chr3	142597592	142598592	+	666.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010259, intron 1 of 10)	intron (NM_010259, intron 1 of 10)	3245.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	16.59	16.59	25.9	16.19	7.0	14.47	27.46	30.95	24.98
Merged-chr4-88514627-3	chr4	88514132	88515132	+	666.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8162.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	6.29	3.69	7.4	8.1	7.0	1.61	6.34	3.54	1.25
Merged-chr11-120101217-3	chr11	120100718	120101718	+	666.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001110242)	TTS (NM_001110242)	2284.0	NM_001110242	208501.0	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	7.44	5.99	1.85	8.1	2.8	7.23	6.34	4.86	3.75
Merged-chr15-99457236-3	chr15	99456698	99457698	+	666.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001884, intron 1 of 12)	CpG	550.0	NM_001001884	380969.0	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	36.04	39.17	52.72	47.9	38.72	73.95	40.14	39.8	56.83
Merged-chr11-100938831-1	chr11	100938331	100939331	+	666.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	709.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	475.38	460.78	321.88	431.14	422.19	225.06	416.14	539.89	276.67
Merged-chr1-173411175-2	chr1	173410678	173411678	+	666.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9426.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	48.05	61.28	33.3	64.1	34.06	28.13	20.07	24.76	22.48
Merged-chr2-6726315-2	chr2	6725803	6726803	+	666.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-4641.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	9.72	13.36	3.7	18.89	11.66	7.23	11.62	4.86	5.62
Merged-chr16-55616762-2	chr16	55616260	55617260	+	666.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	122029.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	8.58	5.53	5.55	6.75	5.13	8.04	10.56	3.98	14.99
Merged-chr7-102193949-1	chr7	102193449	102194449	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287167, intron 4 of 19)	intron (NM_001287167, intron 4 of 19)	15918.0	NM_001287167	269966.0	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	5.15	12.9	5.55	10.8	10.73	12.86	9.51	3.54	8.74
Merged-chr5-32726357-1	chr5	32725857	32726857	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19985.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.14	7.83	12.95	6.75	6.06	17.68	0.0	0.44	10.62
Merged-chr18-62054195-1	chr18	62053695	62054695	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101120.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	11.44	11.52	9.25	16.87	10.73	8.04	2.11	0.88	1.25
Merged-chr6-125490102-1	chr6	125489602	125490602	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	4658.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	15.45	4.15	1.85	6.75	3.27	4.82	15.84	9.73	9.99
Merged-chr2-103865823-1	chr2	103865323	103866323	+	666.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35128.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	8.58	4.61	4.62	2.7	4.67	1.61	5.28	3.1	1.25
Merged-chr1-180066388-1	chr1	180065888	180066888	+	666.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_153194, intron 7 of 35)	intron (NR_153194, intron 7 of 35)	105299.0	NM_001033285	226751.0	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	14.3	7.37	5.55	3.37	3.27	6.43	3.17	3.54	6.25
Merged-chr10-44371985-2	chr10	44371490	44372490	+	666.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	12314.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	12.59	10.14	1.85	4.05	7.0	6.43	10.56	3.54	9.99
Merged-chr17-5730046-1	chr17	5729546	5730546	+	666.599976	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 7 of 8)	MTD|LTR|ERVL-MaLR	-68611.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	21.74	14.75	14.8	33.06	22.39	24.92	26.4	11.94	6.87
Merged-chr2-22758691-2	chr2	22758156	22759156	+	666.583313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15671.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	16.02	11.52	3.7	10.8	7.93	6.43	5.28	8.4	6.25
Merged-chr10-67002779-3	chr10	67002257	67003257	+	666.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2318.0	NR_110511	102634101.0	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	25.74	14.28	2.77	35.09	22.39	24.92	22.18	11.94	6.25
Merged-chr11-120823331-1	chr11	120822831	120823831	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007988, intron 1 of 42)	intron (NM_007988, intron 1 of 42)	1216.0	NM_007988	14104.0	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	29.17	11.52	16.65	35.09	15.86	23.31	23.24	20.78	3.12
Merged-chrX-73574157-2	chrX	73573647	73574647	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_177236)	TTS (NM_177236)	-65294.0	NM_029352	75590.0	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	10.3	13.82	18.5	12.82	9.8	19.29	7.39	8.4	7.49
Merged-chr7-132305971-1	chr7	132305471	132306471	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-9693.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	9.15	12.44	9.25	2.7	6.53	1.61	4.22	7.52	3.75
Merged-chr2-118389780-2	chr2	118389278	118390278	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	666.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	96.68	114.27	65.67	65.45	83.04	62.7	204.9	216.66	71.2
Merged-chrX-77531234-2	chrX	77530736	77531736	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	intron (NM_020601, intron 1 of 15)	20009.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	2.29	3.23	5.55	3.37	1.87	0.8	5.28	0.0	1.25
Merged-chr19-46588038-2	chr19	46587550	46588550	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053196, intron 5 of 11)	intron (NM_053196, intron 5 of 11)	-11056.0	NM_001177812	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	5.15	1.84	0.92	7.42	3.73	1.61	3.17	6.63	1.87
Merged-chr2-152693425-2	chr2	152692928	152693928	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010376, intron 8 of 11)	intron (NM_010376, intron 8 of 11)	6280.0	NM_025543	66405.0	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	13.73	5.53	4.62	8.1	10.73	6.43	16.9	10.61	7.49
Merged-chr4-3776337-2	chr4	3775924	3776924	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	59231.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	13.73	14.28	24.05	18.89	11.2	35.37	9.51	9.29	17.49
Merged-chr16-49902953-2	chr16	49902467	49903467	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010581, intron 8 of 9)	Lx9|LINE|L1	47313.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	26.31	24.88	32.37	19.57	24.26	38.58	40.14	23.88	28.73
Merged-chr3-121243123-3	chr3	121242621	121243621	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178936, intron 1 of 7)	MTEb|LTR|ERVL-MaLR	20038.0	NM_001355678	99887.0	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	1.72	4.15	0.0	2.7	2.8	3.22	1.06	0.0	2.5
Merged-chr3-89422726-3	chr3	89422215	89423215	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011368, intron 2 of 12)	intron (NM_011368, intron 2 of 12)	1094.0	NM_001113331	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	15.45	4.15	7.4	20.92	5.6	19.29	4.22	7.07	5.62
Merged-chr8-84823850-2	chr8	84823358	84824358	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033145, intron 1 of 1)	intron (NR_033145, intron 1 of 1)	-1035.0	NM_201227	23863.0	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	0.0	1.38	1.85	4.05	0.47	3.22	5.28	0.88	3.75
Merged-chr15-25764887-1	chr15	25764387	25765387	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	-9126.0	NM_001353141	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	8.58	2.76	4.62	4.72	1.4	5.63	4.22	3.54	3.75
Merged-chr18-60775272-2	chr18	60774774	60775774	+	666.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020600, intron 1 of 4)	intron (NM_020600, intron 1 of 4)	678.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	150.45	174.64	103.59	163.28	168.41	103.69	163.71	127.79	81.81
Merged-chr2-103146297-1	chr2	103145797	103146797	+	666.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	72622.0	NM_019735	56369.0	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	15.45	10.14	6.47	6.75	9.8	4.02	4.22	11.5	2.5
Merged-chr9-32623999-2	chr9	32623491	32624491	+	666.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72051.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	2.29	4.61	0.0	6.07	6.53	1.61	3.17	3.98	0.62
Merged-chr2-94436211-2	chr2	94435711	94436711	+	666.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007466, intron 1 of 13)	intron (NM_007466, intron 1 of 13)	1975.0	NM_007466	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	21.74	16.13	11.1	26.99	9.33	29.74	22.18	20.78	7.49
Merged-chr18-81916291-3	chr18	81915758	81916758	+	666.361145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	75822.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	4.0	2.3	3.7	2.7	4.67	1.61	1.06	0.44	5.0
Merged-chr9-120591652-2	chr9	120591153	120592153	+	666.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14322.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	13.16	2.3	3.7	8.77	2.33	1.61	0.0	0.44	6.87
Merged-chr16-3122988-1	chr16	3122488	3123488	+	666.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-469410.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	1.72	6.45	3.7	2.02	3.27	1.61	6.34	1.77	0.0
Merged-chr4-116821091-3	chr4	116820613	116821613	+	666.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146256, exon 1 of 1)	exon (NM_146256, exon 1 of 1)	395.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	17.16	8.29	7.4	8.77	5.13	4.82	6.34	3.1	3.75
Merged-chr17-78249765-1	chr17	78249265	78250265	+	666.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	49517.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	16.59	16.13	2.77	25.64	12.6	12.06	8.45	8.4	9.99
Merged-chr2-121309271-3	chr2	121308769	121309769	+	666.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_032393, exon 7 of 7)	3' UTR (NM_032393, exon 7 of 7)	13815.0	NM_001173506	17754.0	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	13.16	7.83	12.95	11.47	10.73	5.63	9.51	5.31	4.37
Merged-chr9-23597491-2	chr9	23596988	23597988	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	374412.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	26.31	11.52	24.05	12.14	5.6	24.92	19.01	13.71	11.87
Merged-chr3-98042488-2	chr3	98041990	98042990	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010928, intron 1 of 33)	B1F|SINE|Alu	28952.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	50.34	39.17	42.55	58.03	46.65	53.85	59.15	55.27	27.48
Merged-chr16-55476997-2	chr16	55476516	55477516	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17715.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	4.0	1.38	6.47	0.67	0.47	0.8	5.28	3.98	3.75
Merged-chr8-117500462-2	chr8	117499973	117500973	+	666.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	2198.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	10.3	7.83	1.85	6.75	6.53	6.43	3.17	4.42	4.37
Merged-chr2-130411959-2	chr2	130411457	130412457	+	666.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5435.0	NM_025753	66766.0	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	1.72	1.38	1.85	3.37	1.87	1.61	2.11	2.21	0.0
Merged-chr2-84988124-3	chr2	84987648	84988648	+	666.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016914)	promoter-TSS (NM_016914)	-67.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	6.29	3.23	3.7	4.05	1.4	0.0	7.39	1.77	6.25
Merged-chr11-34002414-3	chr11	34001912	34002912	+	666.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	intron (NR_155520, intron 4 of 4)	-9219.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	10.87	14.28	9.25	17.54	8.4	21.7	15.84	11.5	14.99
Merged-chr8-73677750-3	chr8	73677265	73678265	+	666.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	-324225.0	NM_010687	16795.0	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.01	5.07	8.32	9.45	5.6	6.43	5.28	4.42	3.75
Merged-chr11-94340395-2	chr11	94339880	94340880	+	666.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146024)	TTS (NM_146024)	12379.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	4.58	5.53	5.55	10.8	3.73	6.43	7.39	3.98	7.49
Merged-chr2-13572764-2	chr2	13572271	13573271	+	666.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1540.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	54.92	88.93	37.92	65.45	46.65	76.36	45.42	42.45	40.59
Merged-chr14-44989946-3	chr14	44989435	44990435	+	666.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008964, intron 1 of 1)	intron (NM_008964, intron 1 of 1)	1824.0	NM_008964	19217.0	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	94.39	106.44	62.9	51.28	50.38	52.25	84.49	72.07	52.46
Merged-chr6-38065633-3	chr6	38065096	38066096	+	666.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080467, intron 14 of 20)	L1MA4A|LINE|L1	-18600.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	11.44	9.22	7.4	15.52	13.53	17.68	13.73	11.05	9.99
Merged-chr15-27662916-2	chr15	27662414	27663414	+	666.049988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242424, intron 4 of 8)	intron (NM_001242424, intron 4 of 8)	18628.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	22.31	17.97	14.8	20.24	14.0	32.96	12.67	16.8	19.36
Merged-chr4-125115812-2	chr4	125115348	125116348	+	666.025024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12033.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	93.24	114.27	133.19	76.24	76.97	137.45	117.24	89.76	89.93
Merged-chr3-94814545-2	chr3	94814050	94815050	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23017.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	21.17	25.8	8.32	22.27	20.06	30.54	10.56	9.73	13.12
Merged-chr16-13239802-1	chr16	13239302	13240302	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-16679.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	16.02	5.99	6.47	16.87	6.53	6.43	8.45	10.61	9.37
Merged-chr5-105975877-1	chr5	105975377	105976377	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99309.0	NM_018759	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	2.86	1.38	0.92	6.07	1.87	3.22	2.11	1.33	2.5
Merged-chr16-22031817-1	chr16	22031317	22032317	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 9 of 16)	intron (NR_027488, intron 9 of 16)	22333.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	24.6	48.84	57.35	43.18	48.98	67.52	45.42	59.69	42.47
Merged-chr11-49728034-2	chr11	49727544	49728544	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15322.0	NM_212484	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	4.58	5.07	0.92	5.4	3.73	5.63	2.11	1.33	3.12
Merged-chr17-84291465-1	chr17	84290965	84291965	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 29 of 37)	L1M4|LINE|L1	-103518.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	29.17	22.58	32.37	15.52	18.66	23.31	9.51	13.27	21.23
Merged-chr3-32333602-1	chr3	32333102	32334102	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31887.0	NR_027966	67576.0	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	2.29	2.76	0.0	0.67	1.87	1.61	4.22	0.44	2.5
Merged-chr8-14072678-1	chr8	14072178	14073178	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034862, intron 2 of 5)	intron (NM_001034862, intron 2 of 5)	17649.0	NM_001034862	234086.0	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.57	1.84	0.0	3.37	4.67	0.0	1.06	0.44	5.62
Merged-chr18-80047248-1	chr18	80046748	80047748	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_053117, intron 1 of 2)	CpG	353.0	NM_053117	93737.0	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	2.86	4.61	0.0	10.8	5.6	4.82	8.45	1.33	2.5
Merged-chr13-22049941-1	chr13	22049441	22050441	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6711.0	NM_178198	319183.0	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	7.44	13.36	5.55	11.47	10.73	7.23	10.56	8.84	6.87
Merged-chr16-25964077-1	chr16	25963577	25964577	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 14 of 14)	intron (NM_173379, intron 14 of 14)	141707.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.0	5.99	1.85	4.72	2.8	0.0	2.11	3.98	7.49
Merged-chr7-127630099-1	chr7	127629599	127630599	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14827.0	NR_155451	320683.0	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	17.73	23.04	14.8	22.27	13.06	10.45	14.79	6.63	5.0
Merged-chr7-80755673-1	chr7	80755173	80756173	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 11 of 37)	intron (NM_016721, intron 11 of 37)	47658.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	16.02	19.81	30.52	16.19	20.53	33.76	6.34	6.63	9.37
Merged-chr2-71546593-1	chr2	71546093	71547093	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_010054, exon 1 of 3)	5' UTR (NM_010054, exon 1 of 3)	161.0	NM_010054	13392.0	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	4.0	1.84	1.85	2.02	0.93	0.0	0.0	1.33	4.37
Merged-chrX-160137515-1	chrX	160137015	160138015	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008810, intron 1 of 10)	intron (NM_008810, intron 1 of 10)	915.0	NM_008810	18597.0	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	56.06	73.26	47.17	70.85	50.85	48.23	71.82	75.61	33.72
Merged-chr11-93972421-1	chr11	93971921	93972921	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3900.0	NM_008704	18102.0	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	24.6	13.82	19.42	12.82	11.66	22.51	19.01	14.59	6.25
Merged-chr8-121635761-1	chr8	121635261	121636261	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080855, intron 1 of 12)	intron (NM_080855, intron 1 of 12)	16172.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.57	5.07	5.55	4.72	7.46	5.63	1.06	1.33	3.75
Merged-chr11-29307869-1	chr11	29307369	29308369	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-60597.0	NM_025740	216618.0	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	8.01	15.67	25.9	6.07	2.33	5.63	3.17	3.1	5.0
Merged-chr8-126683690-1	chr8	126683190	126684190	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-90254.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	10.87	10.14	3.7	16.19	10.26	6.43	10.56	9.73	9.99
Merged-chr1-37457782-1	chr1	37457282	37458282	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 8 of 15)	intron (NM_173870, intron 8 of 15)	27643.0	NM_001356528	67387.0	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	1.72	4.15	1.85	4.72	3.27	1.61	6.34	1.77	2.5
Merged-chr2-44275506-1	chr2	44275006	44276006	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 12 of 14)	intron (NM_001301831, intron 12 of 14)	-210182.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	54.35	74.19	28.67	91.09	80.24	50.64	85.55	82.24	34.35
Merged-chr5-69522286-1	chr5	69521786	69522786	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023784, intron 3 of 5)	intron (NM_023784, intron 3 of 5)	20361.0	NM_023784	75581.0	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	3.43	5.53	7.4	10.12	9.8	9.65	8.45	9.73	18.74
Merged-chr18-57597761-1	chr18	57597261	57598261	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311063, intron 5 of 5)	MTC|LTR|ERVL-MaLR	40824.0	NR_045360	70157.0	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	26.31	35.02	31.45	20.92	17.73	43.4	14.79	20.34	18.74
Merged-chr3-89731189-2	chr3	89730691	89731691	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001146296, intron 1 of 14)	intron (NM_001146296, intron 1 of 14)	473.0	NM_019655	56417.0	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|DRADA|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	172.19	158.05	144.29	164.63	166.08	149.5	193.28	249.82	114.91
Merged-chr1-74712724-1	chr1	74712224	74713224	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024264)	promoter-TSS (NM_024264)	-811.0	NM_024264	104086.0	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	74.94	107.36	80.47	81.64	75.57	98.87	90.83	107.89	71.2
Merged-chr3-88754495-2	chr3	88753987	88754987	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018804, intron 2 of 3)	B3A|SINE|B2	18112.0	NM_018804	229521.0	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	4.58	4.15	7.4	3.37	2.8	0.0	3.17	6.63	0.0
Merged-chr2-25534347-1	chr2	25533847	25534847	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009422, intron 4 of 10)	intron (NM_009422, intron 4 of 10)	12593.0	NM_001290413	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	10.3	5.07	10.17	8.1	10.73	1.61	5.28	15.48	6.25
Merged-chr15-102274171-2	chr15	102273681	102274681	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5275.0	NM_134100	106073.0	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	7.44	9.22	9.25	8.1	1.87	12.86	6.34	6.19	8.12
Merged-chr3-107113400-1	chr3	107112900	107113900	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008417, exon 3 of 3)	3' UTR (NM_008417, exon 3 of 3)	11833.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.58	5.99	9.25	12.82	12.6	19.29	19.01	21.22	12.49
Merged-chr4-143210953-1	chr4	143210453	143211453	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256380, intron 1 of 7)	intron (NM_001256380, intron 1 of 7)	1756.0	NM_001081355	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	24.03	26.73	18.5	24.96	16.79	32.15	28.52	19.01	24.36
Merged-chr9-44655886-1	chr9	44655386	44656386	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-17347.0	NM_001277851	58866.0	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	9.72	6.45	1.85	12.14	15.39	4.82	15.84	13.71	2.5
Merged-chr8-84592182-2	chr8	84591701	84592701	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 30 of 47)	LTR16C|LTR|ERVL	70651.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	4.0	1.38	1.85	2.7	1.4	0.0	0.0	0.44	5.62
Merged-chr15-7130035-1	chr15	7129535	7130535	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358593, intron 1 of 19)	intron (NM_001358593, intron 1 of 19)	463.0	NM_001358593	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	7.44	13.82	24.97	11.47	7.0	8.04	13.73	11.94	12.49
Merged-chr13-74247225-1	chr13	74246725	74247725	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317351, intron 3 of 9)	intron (NM_001317351, intron 3 of 9)	-38525.0	NM_177333	211446.0	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	24.03	38.25	17.57	16.19	20.53	23.31	12.67	14.59	19.36
Merged-chr9-83528445-1	chr9	83527945	83528945	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19893.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	9.72	2.3	5.55	3.37	2.8	7.23	7.39	9.73	0.62
Merged-chr1-135705712-1	chr1	135705212	135706212	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14351.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	5.15	4.61	1.85	2.02	1.87	0.0	6.34	3.54	0.0
Merged-chr3-144586867-3	chr3	144586370	144587370	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053102, intron 2 of 4)	intron (NM_053102, intron 2 of 4)	16443.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	57.21	80.64	27.75	49.25	46.65	34.56	44.36	42.45	35.6
Merged-chr6-31399744-1	chr6	31399244	31400244	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040300)	promoter-TSS (NR_040300)	916.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	125.85	96.3	56.42	148.44	76.97	116.55	120.41	103.02	40.59
Merged-chr8-111551971-1	chr8	111551471	111552471	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	13628.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	9.72	8.29	15.72	17.54	19.59	13.66	13.73	7.52	13.74
Merged-chr6-146669067-1	chr6	146668567	146669567	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11849.0	NR_046277	74925.0	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	4.0	5.07	5.55	20.92	13.06	9.65	8.45	3.54	3.12
Merged-chrX-7842474-1	chrX	7841974	7842974	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138604, exon 1 of 9)	exon (NM_138604, exon 1 of 9)	392.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	125.28	91.24	108.22	106.61	49.45	90.02	98.23	83.13	88.68
Merged-chr16-49819721-1	chr16	49819221	49820221	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-35933.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	9.15	16.13	7.4	16.19	10.73	9.65	11.62	7.96	11.24
Merged-chr2-129299328-1	chr2	129298828	129299828	+	666.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010554)	TTS (NM_010554)	1958.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	14.87	20.27	17.57	13.49	7.0	12.86	15.84	14.15	9.37
Merged-chr14-67012716-1	chr14	67012216	67013216	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3839.0	NM_009761	12177.0	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	5.15	5.07	6.47	6.75	12.13	13.66	7.39	6.19	1.25
Merged-chr9-71188803-2	chr9	71188281	71189281	+	666.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110517, intron 5 of 5)	MLT1D|LTR|ERVL-MaLR	20005.0	NR_110517	102635087.0	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	4.58	2.76	2.77	6.07	2.8	0.0	9.51	3.98	8.12
Merged-chr4-45528714-1	chr4	45528214	45529214	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	2114.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	24.03	28.11	28.67	25.64	19.13	32.96	33.8	27.41	16.24
Merged-chr10-93919687-1	chr10	93919187	93920187	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28485.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	8.01	5.99	3.7	8.77	3.27	3.22	10.56	3.1	6.25
Merged-chr13-3896166-1	chr13	3895666	3896666	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	-2585.0	NM_001047159	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	8.01	6.91	8.32	15.52	9.8	6.43	9.51	2.21	6.25
Merged-chr12-83921336-1	chr12	83920836	83921836	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073564, intron 1 of 12)	CpG	598.0	NR_073563	18222.0	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	NUMB endocytic adaptor protein	protein-coding	53.77	46.08	54.57	52.63	38.72	53.85	76.05	45.1	37.47
Merged-chr16-70414881-2	chr16	70414379	70415379	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	intron (NM_028803, intron 3 of 15)	100930.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	9.15	7.83	11.1	4.72	3.27	6.43	10.56	11.05	13.74
Merged-chr4-129832598-1	chr4	129832098	129833098	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164745, intron 1 of 5)	intron (NM_001164745, intron 1 of 5)	11890.0	NM_001164745	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	45.76	52.99	21.27	37.11	33.59	32.15	50.7	47.31	26.23
Merged-chr12-100398034-2	chr12	100397546	100398546	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	intron (NM_001033213, intron 9 of 19)	121437.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	20.02	11.98	13.87	10.12	11.2	24.11	5.28	17.24	10.62
Merged-chr8-128436317-1	chr8	128435817	128436817	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 6 of 16)	intron (NM_001358959, intron 6 of 16)	77076.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	14.87	13.82	13.87	17.54	14.0	16.88	10.56	15.48	19.36
Merged-chr3-144679759-1	chr3	144679259	144680259	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40576.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	76.08	65.43	61.05	87.71	67.18	52.25	16.9	15.92	13.74
Merged-chr14-105676609-1	chr14	105676109	105677109	+	666.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52839.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	2.86	1.38	1.85	3.37	0.93	3.22	3.17	3.54	3.75
Merged-chr11-97663752-3	chr11	97663303	97664303	+	665.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139311, intron 1 of 19)	intron (NM_139311, intron 1 of 19)	391.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	86.95	50.69	42.55	66.12	25.66	39.39	72.88	26.53	47.46
Merged-chr15-80080800-3	chr15	80080318	80081318	+	665.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013762, intron 4 of 9)	intron (NM_013762, intron 4 of 9)	2088.0	NR_028281	100302600.0		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	10.3	11.06	15.72	13.49	7.46	26.53	12.67	15.03	23.73
Merged-chr16-3776506-2	chr16	3775989	3776989	+	665.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32390.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	13.16	8.75	5.55	6.07	1.87	4.82	3.17	4.86	2.5
Merged-chr2-150894746-2	chr2	150894226	150895226	+	665.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	intron (NR_151505, intron 1 of 12)	10005.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	81.8	87.09	64.75	70.85	73.24	70.73	60.2	55.27	51.21
Merged-chr14-22102574-3	chr14	22102083	22103083	+	665.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	82871.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	8.01	12.9	14.8	10.8	8.4	12.86	26.4	17.24	29.98
Merged-chr6-34041025-3	chr6	34040515	34041515	+	665.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028886, intron 3 of 19)	MER5A|DNA|hAT-Charlie	11567.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	4.0	2.76	0.92	4.05	5.13	3.22	7.39	5.31	3.75
Merged-chr5-64202491-2	chr5	64201999	64202999	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-27858.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.58	9.68	11.1	26.31	19.59	31.35	31.69	15.48	9.37
Merged-chr3-89360528-2	chr3	89360091	89361091	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029974, intron 3 of 15)	L2|LINE|L2	4662.0	NM_029974	77772.0	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	6.86	3.23	3.7	4.72	0.93	3.22	4.22	2.65	3.75
Merged-chr12-44292474-2	chr12	44291967	44292967	+	665.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 5 of 9)	intron (NM_026164, intron 5 of 9)	23313.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	2.29	4.15	5.55	2.7	3.27	3.22	2.11	2.21	5.62
Merged-chr8-86852424-2	chr8	86851925	86852925	+	665.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030563, intron 3 of 6)	intron (NM_030563, intron 3 of 6)	32833.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	14.87	8.29	7.4	14.17	7.93	14.47	8.45	5.75	12.49
Merged-chr15-97782865-3	chr15	97782314	97783314	+	665.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1551.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	4.58	5.07	3.7	6.07	1.4	4.82	2.11	1.77	8.74
Merged-chr5-65198540-1	chr5	65198040	65199040	+	665.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-1156.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.86	16.13	12.95	18.89	17.73	7.23	13.73	9.29	17.49
Merged-chr14-66241919-3	chr14	66241419	66242419	+	665.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-28095.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	33.18	43.77	32.37	34.41	26.12	42.6	57.03	53.06	33.1
Merged-chr13-37509545-1	chr13	37509045	37510045	+	665.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164200.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	2.86	4.61	0.0	2.02	2.8	8.04	1.06	2.65	1.87
Merged-chr12-87261649-3	chr12	87261169	87262169	+	665.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001142581, intron 2 of 18)	MTC|LTR|ERVL-MaLR	2575.0	NM_134044	104799.0	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	35.47	29.49	16.65	25.64	18.19	24.92	27.46	31.84	22.48
Merged-chr9-110742424-2	chr9	110741942	110742942	+	665.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001083936, exon 1 of 14)	5' UTR (NM_001083936, exon 1 of 14)	168.0	NM_001083936	19228.0	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	5.72	1.38	1.85	3.37	2.33	0.0	2.11	1.77	3.12
Merged-chr8-64417150-2	chr8	64416663	64417663	+	665.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97278.0	NR_030491	735270.0		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	2.29	2.76	0.0	2.02	2.8	6.43	3.17	3.98	9.99
Merged-chr5-30344054-2	chr5	30343546	30344546	+	665.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033460, intron 2 of 15)	intron (NM_001033460, intron 2 of 15)	2383.0	NM_001033460	381738.0	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	4.58	0.92	0.0	5.4	1.87	0.0	5.28	2.21	3.75
Merged-chr1-89043155-2	chr1	89042662	89043662	+	665.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	27049.0	NR_040471	73475.0	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	8.58	4.15	8.32	6.75	4.67	6.43	3.17	6.63	2.5
Merged-chr10-93310351-3	chr10	93309839	93310839	+	665.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	CpG	820.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	80.09	91.7	100.82	93.79	70.91	110.92	33.8	26.09	21.86
Merged-chr7-99962107-2	chr7	99961582	99962582	+	665.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	18376.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	109.83	108.28	76.77	97.16	71.38	93.24	80.27	74.73	48.71
Merged-chr6-4904237-2	chr6	4903713	4904713	+	665.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 1 of 15)	intron (NM_181595, intron 1 of 15)	893.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	25.74	40.55	30.52	36.43	66.24	28.13	42.25	45.54	21.86
Merged-chr18-32391546-2	chr18	32391045	32392045	+	665.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-13261.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	9.72	9.22	11.1	8.1	7.46	7.23	7.39	3.1	6.25
Merged-chr7-27285909-2	chr7	27285405	27286405	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	27144.0	NM_010950	18223.0	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	3.43	1.84	0.0	3.37	0.0	1.61	2.11	0.0	0.0
Merged-chr11-106289629-1	chr11	106289129	106290129	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12267.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	1.72	4.61	2.77	5.4	5.6	2.41	2.11	0.44	2.5
Merged-chr2-25279345-1	chr2	25278845	25279845	+	665.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175300, intron 8 of 12)	intron (NM_175300, intron 8 of 12)	6879.0	NM_175300	99152.0	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	6.86	2.3	5.55	4.72	2.8	4.82	1.06	1.33	6.25
Merged-chr10-80063684-1	chr10	80063184	80064184	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183426, exon 17 of 32)	exon (NM_183426, exon 17 of 32)	9665.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	8.01	8.29	14.8	4.05	1.4	17.68	5.28	6.63	6.25
Merged-chr5-99387065-1	chr5	99386565	99387565	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-134138.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	12.59	23.96	11.1	22.27	15.39	27.33	12.67	20.78	9.99
Merged-chr17-46161854-2	chr17	46161343	46162343	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357745)	promoter-TSS (NM_001357745)	-221.0	NM_001357745	56055.0	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	85.81	94.0	93.42	51.28	55.51	65.11	65.48	99.49	66.82
Merged-chrX-41837841-1	chrX	41837341	41838341	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033422, intron 18 of 38)	5S|rRNA|rRNA	74060.0	NM_001033422	331401.0	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	11.44	12.9	7.4	9.45	8.4	11.25	14.79	7.07	11.24
Merged-chr17-36904923-1	chr17	36904423	36905423	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146077, intron 3 of 7)	intron (NM_146077, intron 3 of 7)	6793.0	NM_146077	224762.0	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	5.72	2.3	5.55	3.37	3.27	3.22	1.06	2.65	1.25
Merged-chr4-132803770-2	chr4	132803286	132804286	+	665.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-7422.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	87.52	95.38	74.92	60.05	46.65	68.32	105.62	113.19	61.2
Merged-chrX-99975467-1	chrX	99974967	99975967	+	665.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177941)	promoter-TSS (NM_001177941)	-139.0	NM_001177944	13607.0	Mm.328086	NM_010099	ENSMUSG00000059327	Eda	EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|Tnlg7c|XLHED|tabby	ectodysplasin-A	protein-coding	1.14	3.23	1.85	3.37	0.93	1.61	1.06	0.0	0.0
Merged-chr19-21943614-2	chr19	21943127	21944127	+	665.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	165287.0	NM_031997	83921.0	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	5.15	4.15	2.77	6.75	7.93	0.0	5.28	2.65	5.0
Merged-chrX-13636530-2	chrX	13636032	13637032	+	665.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011823, intron 2 of 2)	CT-rich|Low_complexity|Low_complexity	3763.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	12.59	6.91	9.25	5.4	12.6	10.45	3.17	6.63	0.62
Merged-chr12-76583066-2	chr12	76582584	76583584	+	665.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-35159.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.29	3.23	5.55	8.1	3.27	6.43	3.17	1.33	11.24
Merged-chr8-56615264-3	chr8	56614743	56615743	+	665.42218	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64109.0	NM_015791	50753.0	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	4.58	5.53	9.25	3.37	7.46	1.61	5.28	4.42	2.5
Merged-chr1-194993733-2	chr1	194993226	194994226	+	665.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16767.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	44.05	48.38	59.2	47.9	56.45	58.68	73.93	81.36	52.46
Merged-chr4-3810403-2	chr4	3809904	3810904	+	665.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25251.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	7.44	8.75	3.7	8.1	2.8	6.43	9.51	5.75	9.37
Merged-chr6-53216849-2	chr6	53216358	53217358	+	665.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4306.0	NR_073371	231989.0	Mm.372520	NR_073371	ENSMUSG00000107935	Gm4872	D430007I03	predicted gene 4872	ncRNA	1.72	0.92	1.85	6.07	1.87	1.61	3.17	2.21	11.24
Merged-chr5-142903010-3	chr5	142902563	142903563	+	665.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007393)	TTS (NM_007393)	3691.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	13.73	19.35	15.72	10.12	12.13	10.45	21.12	17.69	15.61
Merged-chr11-78353260-2	chr11	78352761	78353761	+	665.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6551.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.15	4.61	1.85	8.1	4.67	5.63	6.34	4.86	4.37
Merged-chr8-3284249-1	chr8	3283749	3284749	+	665.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4632.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	1.14	0.92	4.62	2.7	0.47	8.04	5.28	6.19	2.5
Merged-chr4-88741650-1	chr4	88741150	88742150	+	665.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-13218.0	NM_001085528	435791.0	Mm.473673	NM_001085528	ENSMUSG00000094618	Gm13271	Ifnz	predicted gene 13271	protein-coding	7.44	2.76	2.77	2.02	2.8	1.61	4.22	1.77	7.49
Merged-chr3-90432610-1	chr3	90432110	90433110	+	665.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178876, intron 1 of 30)	intron (NM_178876, intron 1 of 30)	1026.0	NM_145540	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	30.32	42.39	57.35	51.28	44.78	77.97	46.47	40.68	34.97
Merged-chr7-83610120-1	chr7	83609620	83610620	+	665.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 14 of 22)	RMER15|LTR|ERVL	-21897.0	NM_023377	170460.0	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	3.43	3.23	1.85	4.05	2.33	1.61	10.56	7.96	7.49
Merged-chr10-59950821-1	chr10	59950321	59951321	+	665.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029083, exon 3 of 3)	exon (NM_029083, exon 3 of 3)	949.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	24.6	20.27	22.2	15.52	14.0	38.58	12.67	12.38	18.11
Merged-chr5-73651081-1	chr5	73650581	73651581	+	665.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178387)	promoter-TSS (NM_178387)	-299.0	NM_178387	73472.0	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	8.58	3.23	3.7	2.7	3.27	1.61	3.17	2.65	9.99
Merged-chr6-131433665-2	chr6	131433177	131434177	+	665.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-45227.0	NM_011733	56449.0	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	5.15	4.61	0.0	4.05	5.13	3.22	2.11	3.1	8.74
Merged-chr16-64865555-3	chr16	64865063	64866063	+	665.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	13562.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	2.29	2.76	11.1	11.47	4.67	6.43	4.22	3.54	5.0
Merged-chr6-15626314-2	chr6	15625811	15626811	+	665.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-94350.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	20.02	10.6	11.1	11.47	17.26	6.43	16.9	14.59	10.62
Merged-chr10-45486253-2	chr10	45485798	45486798	+	665.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-16097.0	NM_001031772	380669.0	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	4.0	0.92	0.0	6.07	0.93	1.61	2.11	0.0	0.0
Merged-chr11-57674099-3	chr11	57673611	57674611	+	665.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-24617.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	17.16	13.82	22.2	8.1	8.4	12.06	26.4	13.71	48.09
Merged-chr6-117882328-3	chr6	117881800	117882800	+	665.011108	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18040.0	NM_001166432	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	41.19	39.17	37.92	48.58	45.25	65.11	62.31	64.11	59.33
Merged-chr17-71187968-2	chr17	71187471	71188471	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	3993.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	16.02	14.28	5.55	11.47	3.73	6.43	13.73	14.59	8.74
Merged-chr7-48894335-1	chr7	48893835	48894835	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12739.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	1.72	5.99	1.85	2.7	2.8	1.61	4.22	0.88	1.25
Merged-chr13-37452643-1	chr13	37452143	37453143	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	107298.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	49.2	26.73	33.3	47.23	39.19	43.4	48.58	31.84	15.61
Merged-chr4-141976292-1	chr4	141975792	141976792	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-6700.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	3.43	2.76	1.85	2.7	1.87	4.82	4.22	0.88	4.37
Merged-chr17-83123125-1	chr17	83122625	83123625	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44900.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	5.15	4.61	7.4	6.07	2.8	4.82	3.17	0.44	9.99
Merged-chr12-55489870-1	chr12	55489370	55490370	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_010907, exon 6 of 6)	3' UTR (NM_010907, exon 6 of 6)	2777.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	227.68	276.01	189.62	214.56	165.14	178.44	267.21	279.01	131.78
Merged-chr12-87374343-2	chr12	87373842	87374842	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 1 of 11)	intron (NM_011479, intron 1 of 11)	14013.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	10.3	11.98	12.95	9.45	10.26	13.66	11.62	9.73	6.87
Merged-chr9-21286661-2	chr9	21286111	21287111	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_145416, exon 3 of 19)	exon (NM_145416, exon 3 of 19)	1358.0	NM_145416	215194.0	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	11.44	4.61	2.77	8.1	5.13	10.45	7.39	5.31	9.99
Merged-chr13-114458519-1	chr13	114458019	114459019	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001301373, exon 1 of 6)	exon (NM_001301373, exon 1 of 6)	432.0	NM_001301373	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	1.72	1.38	0.0	2.7	1.4	0.0	1.06	0.0	1.25
Merged-chr19-4207150-3	chr19	4206668	4207668	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5565.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	10.3	2.76	1.85	6.07	0.47	1.61	4.22	1.77	0.62
Merged-chr15-53673689-1	chr15	53673189	53674189	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 3 of 4)	intron (NM_177225, intron 3 of 4)	-59410.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	7.44	5.53	3.7	6.07	1.87	4.82	3.17	1.33	8.74
Merged-chr13-102025673-1	chr13	102025173	102026173	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-257456.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	24.03	19.81	20.35	12.14	16.33	12.86	20.07	15.48	10.62
Merged-chr9-21357521-1	chr9	21357021	21358021	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10350.0	NM_001042708	16201.0	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	5.15	2.76	1.85	6.75	5.13	3.22	1.06	3.54	6.25
Merged-chr5-41187478-1	chr5	41186978	41187978	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	520213.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	4.0	2.76	11.1	2.02	4.2	6.43	11.62	7.52	11.24
Merged-chr4-117473656-1	chr4	117473156	117474156	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025739, intron 2 of 14)	intron (NM_025739, intron 2 of 14)	23396.0	NM_025739	66743.0	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	2.29	1.84	1.85	7.42	1.4	3.22	3.17	3.1	1.25
Merged-chr15-100028313-1	chr15	100027813	100028813	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10351.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	4.58	3.23	0.0	2.02	2.33	3.22	3.17	2.21	0.0
Merged-chr16-45733359-1	chr16	45732859	45733859	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073572, intron 3 of 4)	MTD|LTR|ERVL-MaLR	-8828.0	NM_019754	56370.0	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	13.16	13.82	12.02	12.14	10.73	17.68	3.17	0.44	2.5
Merged-chr7-142374191-1	chr7	142373691	142374691	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347541)	promoter-TSS (NM_001347541)	-445.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	40.04	37.32	36.07	13.49	5.6	6.43	64.43	57.92	23.11
Merged-chr5-137062028-1	chr5	137061528	137062528	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_008871, exon 9 of 9)	3' UTR (NM_008871, exon 9 of 9)	10244.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	1.72	3.23	5.55	6.75	3.27	0.8	5.28	1.33	1.25
Merged-chr6-141132587-1	chr6	141132087	141133087	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-116682.0	NM_018779	54611.0	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.57	1.84	7.4	1.35	1.87	0.0	3.17	6.63	2.5
Merged-chr19-25044982-1	chr19	25044482	25045482	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	RLTR20A4|LTR|ERVK	45453.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	5.72	5.99	11.1	15.52	12.6	4.82	14.79	18.13	13.12
Merged-chr2-131159628-1	chr2	131159128	131160128	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154887, intron 1 of 6)	intron (NR_154887, intron 1 of 6)	453.0	NR_154887	67326.0	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	45.76	28.57	31.45	82.99	64.84	51.44	45.42	55.27	13.74
Merged-chr6-17652940-1	chr6	17652440	17653440	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007604, intron 3 of 9)	intron (NM_007604, intron 3 of 9)	15930.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	28.6	30.87	20.35	20.92	25.19	36.97	22.18	23.43	13.74
Merged-chr6-31211292-1	chr6	31210792	31211792	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	7182.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	34.9	25.34	15.72	35.76	20.06	42.6	25.35	25.65	18.74
Merged-chr9-70891558-2	chr9	70891059	70892059	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	43249.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	9.15	4.15	7.4	11.47	8.86	16.08	16.9	3.1	4.37
Merged-chr5-90332166-1	chr5	90331666	90332666	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198010, intron 1 of 32)	B3|SINE|B2	34019.0	NM_030886	81702.0	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	14.3	5.99	9.25	12.82	17.26	23.31	26.4	14.59	6.25
Merged-chr11-46437785-1	chr11	46437285	46438285	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001104556, intron 1 of 1)	intron (NM_001104556, intron 1 of 1)	824.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	47.48	52.53	41.62	75.57	69.51	49.83	71.82	45.99	18.11
Merged-chr19-34445004-1	chr19	34444504	34445504	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	30131.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	18.88	26.73	25.9	14.17	19.59	25.72	25.35	20.34	14.99
Merged-chr13-107763342-1	chr13	107762842	107763842	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 5 of 14)	intron (NM_145456, intron 5 of 14)	75945.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	48.05	40.09	37.92	43.86	22.39	28.13	67.6	54.39	18.74
Merged-chr13-93816279-2	chr13	93815766	93816766	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	intron (NM_009712, intron 4 of 7)	25489.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	2.86	5.07	14.8	6.75	4.67	8.84	7.39	8.4	8.12
Merged-chr15-64263199-1	chr15	64262699	64263699	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	49474.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	17.16	26.26	37.0	16.19	17.26	24.11	38.02	23.88	14.99
Merged-chr7-24448950-1	chr7	24448450	24449450	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3268.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	2.86	2.3	5.55	3.37	2.33	8.84	4.22	1.33	1.25
Merged-chr8-24525289-2	chr8	24524792	24525792	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40306.0	NR_035483									2.29	0.46	2.77	2.02	1.87	3.22	4.22	3.98	1.25
Merged-chr10-44481593-1	chr10	44481093	44482093	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22845.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	6.86	5.53	1.85	5.4	5.6	4.82	5.28	3.54	0.0
Merged-chr6-24712655-1	chr6	24712155	24713155	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20590.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	5.15	1.84	8.32	10.8	7.46	7.23	1.06	5.31	6.87
Merged-chr13-32934757-1	chr13	32934257	32935257	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR25C|LTR|ERVK	-30756.0	NM_011454	20708.0	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	28.03	32.25	12.95	33.06	35.92	15.27	35.91	37.14	13.74
Merged-chr8-111678289-2	chr8	111677772	111678772	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11402.0	NR_106044	102466993.0		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	2.29	2.76	0.0	5.4	2.8	1.61	3.17	0.88	1.25
Merged-chr11-60175835-1	chr11	60175335	60176335	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037764, intron 1 of 4)	CpG	24782.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	5.72	2.3	3.7	4.05	2.8	0.0	6.34	2.65	2.5
Merged-chr3-79885952-2	chr3	79885465	79886465	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133187)	promoter-TSS (NM_133187)	35.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	2.29	3.23	3.7	5.4	5.6	6.43	4.22	5.75	1.25
Merged-chr2-48827575-1	chr2	48827075	48828075	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007396, intron 1 of 10)	intron (NM_007396, intron 1 of 10)	13466.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	10.3	8.75	7.4	9.45	4.67	4.82	10.56	8.4	9.99
Merged-chr15-77624875-2	chr15	77624377	77625377	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18409.0	NM_001143686	328563.0	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	3.43	2.76	9.25	7.42	3.27	2.41	11.62	0.44	0.62
Merged-chr7-24653870-1	chr7	24653370	24654370	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7424.0	NR_030681	100043706.0	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	4.58	1.38	3.7	4.72	7.46	0.0	2.11	0.0	5.0
Merged-chr6-129231709-1	chr6	129231209	129232209	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040265)	TTS (NR_040265)	6336.0	NR_040265	76432.0	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	85.24	94.46	110.99	61.4	39.19	94.04	98.23	82.69	73.69
Merged-chr10-75830383-1	chr10	75829883	75830883	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	4498.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	5.72	5.07	0.0	6.07	3.73	4.02	1.06	3.98	3.75
Merged-chr15-41778868-1	chr15	41778368	41779368	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-10127.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.29	2.76	0.0	11.47	2.33	3.22	9.51	8.84	6.87
Merged-chr2-93988688-1	chr2	93988188	93989188	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026944, intron 8 of 9)	intron (NM_026944, intron 8 of 9)	8654.0	NR_045827	70852.0	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.0	2.76	5.55	4.72	0.93	1.61	9.51	3.1	4.37
Merged-chr5-149245634-1	chr5	149245134	149246134	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19370.0	NM_001308462	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	119.56	99.07	75.85	75.57	94.23	72.34	99.28	103.02	64.33
Merged-chr4-130900061-1	chr4	130899561	130900561	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13273.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	28.03	20.74	12.02	24.96	24.72	16.08	44.36	38.03	21.23
Merged-chr4-141248014-2	chr4	141247526	141248526	+	665.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172520, exon 7 of 17)	exon (NM_172520, exon 7 of 17)	5142.0	NM_172520	213649.0	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	6.86	0.92	0.0	2.02	1.87	0.0	1.06	0.88	0.0
Merged-chr5-125053313-1	chr5	125052813	125053813	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 18 of 46)	intron (NM_011424, intron 18 of 46)	49838.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	24.6	18.43	28.67	26.99	20.99	29.74	23.24	15.03	14.36
Merged-chr8-34876845-1	chr8	34876345	34877345	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 5 of 26)	MTE2a|LTR|ERVL-MaLR	69235.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	12.01	11.06	18.5	17.54	13.06	13.66	11.62	3.54	1.25
Merged-chr9-114527263-1	chr9	114526763	114527763	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042503, intron 1 of 3)	intron (NM_001042503, intron 1 of 3)	-30719.0	NM_009916	12773.0	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	4.58	2.3	9.25	0.67	7.93	2.41	3.17	0.44	3.12
Merged-chr2-60962423-1	chr2	60961923	60962923	+	665.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	CpG	781.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	4.58	0.0	0.0	5.4	5.13	0.0	8.45	0.0	1.25
Merged-chr15-103383092-1	chr15	103382592	103383592	+	665.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16301.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	2.86	5.07	8.32	4.05	7.0	6.43	10.56	6.63	6.25
Merged-chr6-28136082-3	chr6	28135563	28136563	+	664.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361125)	promoter-TSS (NM_001361125)	-917.0	NM_001361125	14823.0	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|GluR8|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	4.0	2.3	0.0	2.7	0.47	2.41	4.22	2.21	2.5
Merged-chr18-84784856-3	chr18	84784350	84785350	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40783.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	35.47	36.86	12.95	41.16	31.26	29.74	24.29	23.43	22.48
Merged-chr11-3456478-3	chr11	3455960	3456960	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028317, intron 1 of 3)	intron (NR_028317, intron 1 of 3)	-3504.0	NM_001290473	193670.0	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	5.15	3.69	1.85	0.0	1.4	3.22	1.06	3.54	3.75
Merged-chr7-66387722-3	chr7	66387204	66388204	+	664.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	CpG	637.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	96.68	116.58	147.99	74.89	89.1	99.67	127.8	103.47	98.05
Merged-chr5-124013988-2	chr5	124013466	124014466	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	17114.0	NR_105999	102465625.0		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	94.96	42.39	61.97	75.57	62.05	69.13	89.78	90.2	41.22
Merged-chr11-51968297-1	chr11	51967797	51968797	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029976, intron 1 of 2)	intron (NM_029976, intron 1 of 2)	666.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	34.9	22.58	20.35	37.78	34.06	30.54	31.69	30.95	26.85
Merged-chr16-39192507-2	chr16	39192011	39193011	+	664.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3561.0	NR_153800	102640746.0		NR_153800		Gm36742	-	predicted gene, 36742	ncRNA	2.86	1.84	7.4	11.47	5.6	9.65	9.51	8.84	11.24
Merged-chr3-68717498-1	chr3	68716998	68717998	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26074.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.0	1.84	3.7	1.35	4.2	0.0	1.06	1.77	2.5
Merged-chr2-49727389-3	chr2	49726872	49727872	+	664.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-60314.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	2.86	1.84	6.47	5.4	2.33	4.82	2.11	1.33	1.25
Merged-chr13-45372391-1	chr13	45371891	45372891	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-17351.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	46.91	65.89	37.0	89.74	86.77	55.46	51.75	40.24	12.49
Merged-chr2-150783000-1	chr2	150782500	150783500	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3796.0	NM_153781	110078.0	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	77.8	67.27	55.5	76.24	47.58	65.11	62.31	78.71	36.85
Merged-chr4-82321304-1	chr4	82320804	82321804	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286127, intron 9 of 10)	intron (NM_001286127, intron 9 of 10)	184475.0	NM_001286127	18028.0	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	6.86	14.28	7.4	13.49	23.33	3.22	4.22	6.19	3.12
Merged-chr11-64628306-1	chr11	64627806	64628806	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-191632.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.29	12.44	12.95	8.77	12.13	4.82	1.06	6.19	7.49
Merged-chr11-116429099-1	chr11	116428599	116429599	+	664.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4995.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	38.9	40.09	51.8	29.01	27.06	32.15	49.64	63.23	44.97
Merged-chr4-140700445-3	chr4	140699951	140700951	+	664.633362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	-1022.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	52.63	41.01	37.92	76.24	63.91	40.19	71.82	73.4	33.1
Merged-chr6-124717052-2	chr6	124716548	124717548	+	664.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029554)	TTS (NR_029554)	937.0	NR_029554	387159.0		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	23.45	24.88	23.12	24.96	15.86	28.13	20.07	8.4	28.73
Merged-chr7-66121221-2	chr7	66120726	66121726	+	664.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	11711.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	14.87	38.25	22.2	22.27	26.12	26.53	29.57	24.76	20.61
Merged-chr12-3409185-3	chr12	3408687	3409687	+	664.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030694, intron 1 of 2)	intron (NR_030694, intron 1 of 2)	17560.0	NR_030694	100043040.0	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	3.43	8.29	3.7	4.05	6.06	4.02	3.17	3.98	5.0
Merged-chr5-135145778-3	chr5	135145306	135146306	+	664.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3905.0	NM_013763	27368.0	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	8.58	7.83	8.32	10.12	7.0	5.63	8.45	10.17	14.36
Merged-chr12-80877907-3	chr12	80877432	80878432	+	664.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_178682, exon 6 of 6)	3' UTR (NM_178682, exon 6 of 6)	46515.0	NR_033786	67340.0	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	10.87	14.75	6.47	8.1	4.67	9.65	7.39	5.31	9.99
Merged-chr8-108722886-1	chr8	108722386	108723386	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8242.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	56.06	55.75	51.8	80.97	58.31	61.09	51.75	42.89	37.47
Merged-chr7-100988255-1	chr7	100987755	100988755	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23743.0	NM_001302347	18442.0	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	1.72	2.76	7.4	5.4	4.67	1.61	3.17	0.0	2.5
Merged-chr4-109987827-1	chr4	109987327	109988327	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H1|LTR|ERVL-MaLR	9802.0	NM_172296	242620.0	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	2.86	2.76	1.85	3.37	3.27	0.0	2.11	4.42	1.25
Merged-chr16-87445262-1	chr16	87444762	87445762	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-4670.0	NM_016924	53858.0	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	12.01	16.13	24.97	4.72	0.93	1.61	14.79	7.52	6.87
Merged-chr2-166575140-2	chr2	166574643	166575643	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 32 of 39)	intron (NM_177782, intron 32 of 39)	10621.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	4.0	2.76	7.4	1.35	2.8	4.02	0.0	7.96	5.0
Merged-chr8-88361403-2	chr8	88360921	88361921	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012047, intron 2 of 16)	intron (NM_012047, intron 2 of 16)	770.0	NM_012047	26992.0	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	131.57	125.33	112.84	135.62	129.22	112.53	199.62	147.24	59.95
Merged-chr10-41891518-2	chr10	41891016	41892016	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013370, intron 1 of 9)	intron (NM_001013370, intron 1 of 9)	4077.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	25.74	36.86	18.5	31.04	25.66	43.4	34.85	18.57	23.73
Merged-chr14-84444413-1	chr14	84443913	84444913	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001013753, exon 1 of 4)	5' UTR (NM_001013753, exon 1 of 4)	850.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.57	0.46	0.0	2.7	2.33	2.41	2.11	0.88	1.25
Merged-chr17-73393562-3	chr17	73393075	73394075	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033444, intron 1 of 22)	intron (NM_001033444, intron 1 of 22)	5721.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	13.73	11.06	11.1	9.45	7.0	6.43	21.12	7.07	6.25
Merged-chr6-139874626-1	chr6	139874126	139875126	+	664.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207683, intron 23 of 31)	intron (NM_207683, intron 23 of 31)	33181.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.57	4.61	2.77	0.0	3.27	1.61	4.22	3.54	3.75
Merged-chr12-105705973-1	chr12	105705473	105706473	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030187)	promoter-TSS (NM_030187)	-9.0	NM_030187	78801.0	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	3.43	1.38	5.55	5.4	2.33	4.02	3.17	2.65	3.75
Merged-chr14-120326620-2	chr14	120326144	120327144	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	B4|SINE|B4	20192.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	104.69	81.56	64.75	159.23	74.17	63.5	180.61	158.74	91.18
Merged-chr4-148688744-2	chr4	148688250	148689250	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45433.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	28.6	26.26	22.2	14.17	11.2	13.66	1.06	0.88	1.25
Merged-chr2-22777620-1	chr2	22777120	22778120	+	664.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	3293.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	20.59	20.27	15.72	21.59	17.73	24.92	26.4	25.2	14.36
Merged-chr3-104672209-2	chr3	104671709	104672709	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33545.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	7.44	6.91	7.4	6.75	4.67	9.65	1.06	2.65	1.25
Merged-chr5-130256092-1	chr5	130255592	130256592	+	664.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023248)	promoter-TSS (NM_023248)	473.0	NM_178897	100929.0	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	43.48	88.47	62.9	46.56	46.65	30.54	83.44	101.7	38.1
Merged-chr11-76440068-2	chr11	76439577	76440577	+	664.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 15 of 21)	intron (NM_001346670, intron 15 of 21)	28388.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	9.15	3.23	11.1	8.77	4.67	4.82	1.06	5.31	3.12
Merged-chr14-122406750-1	chr14	122406250	122407250	+	664.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033326, intron 1 of 3)	CpG	44365.0	NR_033325	328479.0	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	1.14	1.38	6.47	1.35	2.33	4.02	4.22	0.88	5.0
Merged-chr2-91971129-3	chr2	91970710	91971710	+	664.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7647.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	106.4	116.12	94.35	143.04	99.37	124.59	119.35	137.07	92.43
Merged-chr8-104028867-2	chr8	104028343	104029343	+	664.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72782.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.0	3.69	0.0	2.7	4.2	0.0	0.0	0.88	1.25
Merged-chr2-116913728-2	chr2	116913246	116914246	+	664.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040335)	TTS (NR_040335)	13594.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	50.34	27.19	40.7	70.17	45.25	48.23	34.85	25.65	23.73
Merged-chr6-72161190-2	chr6	72160664	72161664	+	664.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37967.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	52.06	56.68	57.35	73.54	61.11	74.75	58.09	55.27	63.7
Merged-chr1-161354446-1	chr1	161353946	161354946	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40992.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	9.15	6.45	5.55	3.37	4.2	6.43	7.39	2.65	3.75
Merged-chr10-98494541-3	chr10	98494049	98495049	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-142682.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	13.16	10.6	7.4	6.07	7.46	3.22	6.34	4.86	3.75
Merged-chr17-6793689-3	chr17	6793229	6794229	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10949.0	NM_009510	22350.0	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	27.46	28.11	16.65	31.04	16.79	17.68	35.91	23.43	22.48
Merged-chr6-54088344-3	chr6	54087852	54088852	+	664.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	48420.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	18.31	31.33	10.17	16.19	19.13	12.86	20.07	26.09	13.74
Merged-chr13-86020474-1	chr13	86019974	86020974	+	664.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	26321.0	NM_007749	12867.0	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	2.86	4.15	3.7	16.19	8.86	11.25	2.11	3.1	5.0
Merged-chr17-36193759-2	chr17	36193262	36194262	+	664.291626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3611.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.0	0.46	5.55	4.05	3.27	1.61	1.06	2.21	5.0
Merged-chr8-64831842-3	chr8	64831340	64832340	+	664.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178633, intron 2 of 14)	intron (NM_178633, intron 2 of 14)	18084.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	2.86	3.69	3.7	4.05	7.0	1.61	7.39	8.4	5.0
Merged-chr3-90466680-3	chr3	90466184	90467184	+	664.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008727)	promoter-TSS (NM_008727)	-818.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	5.15	0.46	3.7	5.4	3.27	2.41	3.17	0.88	5.0
Merged-chr5-138258835-3	chr5	138258321	138259321	+	664.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153161)	TTS (NM_153161)	3339.0	NM_001081108	66096.0	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	14.87	14.75	16.65	14.84	12.13	17.68	9.51	9.29	10.62
Merged-chr19-10318003-2	chr19	10317510	10318510	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13133.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	7.44	4.15	2.77	2.7	4.2	9.65	7.39	2.65	3.75
Merged-chr17-88255860-3	chr17	88255352	88256352	+	664.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	130340.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	11.44	13.36	0.0	17.54	15.86	18.49	21.12	9.29	6.25
Merged-chr10-51497288-2	chr10	51496799	51497799	+	664.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013532)	TTS (NM_013532)	6401.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	15.45	20.27	21.27	7.42	8.4	29.74	8.45	14.59	18.11
Merged-chr11-20794802-2	chr11	20794316	20795316	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36292.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	1.14	2.76	1.85	2.7	1.87	4.82	7.39	2.21	1.25
Merged-chr18-20640128-2	chr18	20639621	20640621	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155534, intron 1 of 2)	intron (NR_155534, intron 1 of 2)	-25129.0	NM_013697	22139.0	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	8.01	6.91	1.85	10.12	2.33	1.61	7.39	2.21	2.5
Merged-chr7-49751363-2	chr7	49750866	49751866	+	664.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7740.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	2.29	3.23	5.55	4.72	0.47	1.61	2.11	1.77	0.0
Merged-chr2-152187295-3	chr2	152186801	152187801	+	664.244446	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-39539.0	NM_007788	12995.0	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	CK2|Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	4.58	2.76	0.0	1.35	1.87	1.61	2.11	0.88	1.25
Merged-chr11-99039971-3	chr11	99039472	99040472	+	664.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1272.0	NM_010517	16010.0	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IBP-4|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	14.3	5.99	4.62	14.84	3.73	9.65	8.45	3.54	4.37
Merged-chr7-126704217-3	chr7	126703710	126704710	+	664.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301374)	promoter-TSS (NM_001301374)	10.0	NM_001301374	12721.0	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	48.05	40.55	61.97	29.01	27.52	58.68	46.47	44.22	32.48
Merged-chr10-77509853-3	chr10	77509356	77510356	+	664.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133998, intron 2 of 5)	intron (NM_133998, intron 2 of 5)	5957.0	NM_133998	108707.0	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	6.29	3.69	5.55	4.05	2.33	7.23	4.22	0.44	4.37
Merged-chr4-141015465-2	chr4	141014976	141015976	+	664.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161799, intron 8 of 8)	intron (NM_001161799, intron 8 of 8)	4839.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	4.0	9.22	13.87	24.29	21.46	16.88	21.12	19.46	7.49
Merged-chr9-62998784-3	chr9	62998290	62999290	+	664.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-17911.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	9.72	24.42	32.37	22.27	27.52	38.58	20.07	19.9	33.1
Merged-chr8-94874482-2	chr8	94873956	94874956	+	664.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053246, intron 1 of 8)	intron (NM_053246, intron 1 of 8)	1856.0	NM_053246	114255.0	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	2.86	3.23	3.7	4.72	0.47	3.22	3.17	3.1	2.5
Merged-chr11-107511049-2	chr11	107510548	107511548	+	664.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31520.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	4.58	4.15	7.4	18.22	14.46	15.27	12.67	13.71	11.24
Merged-chr11-57519510-3	chr11	57519012	57520012	+	664.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168668)	promoter-TSS (NM_001168668)	847.0	NM_145426	216760.0	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	34.32	46.08	46.25	37.78	32.66	46.62	65.48	41.56	41.22
Merged-chrX-106165261-3	chrX	106164761	106165761	+	664.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-21839.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	8.01	10.14	1.85	8.77	4.2	1.61	10.56	14.59	0.0
Merged-chr7-112514697-1	chr7	112514197	112515197	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020606, intron 1 of 12)	intron (NM_020606, intron 1 of 12)	20986.0	NR_154466	102636183.0	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	13.73	14.28	12.95	14.84	10.26	19.29	26.4	14.59	19.98
Merged-chrX-48277485-1	chrX	48276985	48277985	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028276, exon 12 of 15)	exon (NM_028276, exon 12 of 15)	7941.0	NR_045916	100500713.0	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	9.72	9.22	24.05	4.05	8.86	8.04	11.62	7.07	9.99
Merged-chr11-79610346-1	chr11	79609846	79610846	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003283, intron 2 of 2)	intron (NR_003283, intron 2 of 2)	12817.0	NR_003283	790912.0	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	44.05	25.8	17.57	43.86	21.93	29.74	17.96	11.94	14.36
Merged-chr3-107105132-1	chr3	107104632	107105632	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008417, exon 3 of 3)	exon (NM_008417, exon 3 of 3)	3565.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	14.3	15.21	19.42	22.94	22.86	29.74	55.98	39.35	23.73
Merged-chr10-60373086-1	chr10	60372586	60373586	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159572)	TTS (NM_001159572)	26235.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	10.87	8.75	13.87	18.89	9.8	22.51	9.51	14.15	10.62
Merged-chr10-78305249-1	chr10	78304749	78305749	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	34958.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	7.44	16.59	9.25	12.14	11.66	14.47	9.51	7.07	7.49
Merged-chr13-37797767-1	chr13	37797267	37798267	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28271.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	9.15	3.69	9.25	10.12	5.6	12.86	13.73	10.61	17.49
Merged-chr11-11776039-1	chr11	11775539	11776539	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32923.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	10.3	14.28	25.9	14.17	14.93	33.76	14.79	10.61	21.23
Merged-chr5-149052583-1	chr5	149052083	149053083	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001313894)	promoter-TSS (NM_001313894)	474.0	NM_010439	15289.0	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	220.24	149.29	209.04	166.66	114.29	149.5	174.27	89.32	143.64
Merged-chr3-28814598-1	chr3	28814098	28815098	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9090.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	1.72	3.23	3.7	2.7	1.87	0.0	3.17	2.65	0.0
Merged-chr13-112416605-2	chr13	112416105	112417105	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47465.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	29.17	30.87	31.45	53.98	32.19	28.94	62.31	60.58	51.21
Merged-chr10-78457177-1	chr10	78456677	78457677	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172134, intron 1 of 10)	intron (NM_172134, intron 1 of 10)	7771.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	52.63	58.52	64.75	48.58	46.18	35.37	45.42	60.13	27.48
Merged-chr13-104931970-1	chr13	104931470	104932470	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68077.0	NM_029984	77803.0	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik|Shisal2b	family with sequence similarity 159, member B	protein-coding	8.58	4.15	1.85	4.72	4.67	3.22	8.45	6.19	3.75
Merged-chr13-92733523-1	chr13	92733023	92734023	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61295.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	1.72	3.23	5.55	6.75	2.8	4.82	4.22	0.88	8.74
Merged-chr11-80170420-1	chr11	80169920	80170920	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-13452.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	204.22	122.11	185.92	233.45	99.83	188.09	180.61	162.72	149.26
Merged-chr2-148597139-1	chr2	148596639	148597639	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-75476.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	1.72	1.38	3.7	3.37	7.46	8.04	0.0	7.52	5.0
Merged-chr1-91252587-1	chr1	91252087	91253087	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 1 of 10)	intron (NM_001355764, intron 1 of 10)	2021.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	97.82	106.44	74.92	82.32	58.31	73.95	82.38	58.81	34.35
Merged-chr1-54910967-1	chr1	54910467	54911467	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	15420.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	46.34	65.43	35.15	50.6	39.19	32.96	33.8	45.99	35.6
Merged-chr18-60202325-1	chr18	60201825	60202825	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9752.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	4.58	2.3	0.0	3.37	4.67	4.02	3.17	0.44	1.25
Merged-chr18-60810175-1	chr18	60809675	60810675	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042605, intron 5 of 8)	intron (NM_001042605, intron 5 of 8)	-1901.0	NR_039567	100628611.0		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	18.88	17.05	44.4	5.4	1.87	11.25	15.84	12.38	20.61
Merged-chr5-99235745-1	chr5	99235245	99236245	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	17182.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	53.2	37.78	45.32	42.51	23.33	57.87	57.03	42.01	36.22
Merged-chr11-115160180-2	chr11	115159659	115160659	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021411, intron 6 of 8)	intron (NM_021411, intron 6 of 8)	-3182.0	NM_012030	26941.0	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	4.0	5.07	1.85	8.1	2.8	3.22	5.28	1.77	0.0
Merged-chr15-57859488-1	chr15	57858988	57859988	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32930.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	3.43	3.23	0.0	7.42	2.33	3.22	3.17	6.63	1.87
Merged-chr2-4509408-1	chr2	4508908	4509908	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	intron (NM_001177843, intron 5 of 23)	-50346.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	91.53	131.78	61.97	89.06	87.7	86.01	132.02	134.86	82.44
Merged-chr3-68662586-1	chr3	68662086	68663086	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28058.0	NM_001159424	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	2.86	1.38	3.7	8.77	5.13	3.22	3.17	3.1	1.25
Merged-chr3-51373156-1	chr3	51372656	51373656	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	23391.0	NR_028121	67749.0	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	35.47	50.23	45.32	35.09	41.05	53.05	72.88	53.5	31.23
Merged-chr18-12062638-1	chr18	12062138	12063138	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178801, intron 10 of 14)	intron (NM_178801, intron 10 of 14)	58899.0	NR_110356	338363.0	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	5.72	1.84	1.85	4.05	0.47	0.0	5.28	1.33	2.5
Merged-chr11-121703876-1	chr11	121703376	121704376	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1449.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	288.32	283.84	147.07	294.85	257.51	202.55	260.88	271.49	141.77
Merged-chr12-112876526-1	chr12	112876026	112877026	+	664.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15610.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	5.72	2.76	3.7	4.05	3.27	2.41	2.11	0.0	3.75
Merged-chr11-22848752-1	chr11	22848252	22849252	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	10983.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	19.45	13.82	19.42	18.22	11.66	11.25	20.07	16.8	20.61
Merged-chr7-73556814-1	chr7	73556314	73557314	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037569, intron 1 of 4)	intron (NR_037569, intron 1 of 4)	1581.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	149.88	329.0	96.2	149.79	195.93	117.35	223.91	284.76	134.27
Merged-chr2-45063639-1	chr2	45063139	45064139	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	-40462.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	32.61	38.71	49.02	26.31	28.46	32.15	25.35	22.55	21.23
Merged-chr14-47087462-1	chr14	47086962	47087962	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 9 of 12)	MIRb|SINE|MIR	18485.0	NM_001310544	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.57	1.84	1.85	8.77	4.2	5.63	1.06	1.33	1.87
Merged-chr2-150678573-2	chr2	150678092	150679092	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10352.0	NM_080575	68738.0	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	4.58	2.3	5.55	3.37	5.6	0.0	4.22	1.33	2.5
Merged-chr11-5737337-2	chr11	5736847	5737847	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	MER44B|DNA|TcMar-Tigger	3829.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	16.59	8.75	10.17	6.75	10.73	9.65	26.4	21.67	8.74
Merged-chr10-34199792-1	chr10	34199292	34200292	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	7759.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	53.2	65.43	57.35	41.83	30.79	47.42	69.71	53.06	58.71
Merged-chr18-80777664-1	chr18	80777164	80778164	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015805, intron 14 of 28)	intron (NM_015805, intron 14 of 28)	-64593.0	NM_001164110	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	6.86	5.99	8.32	6.07	5.13	3.22	3.17	2.21	3.12
Merged-chr4-103346273-1	chr4	103345773	103346773	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	32427.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	2.29	4.61	1.85	8.77	2.33	1.61	2.11	3.98	1.87
Merged-chr2-120730959-1	chr2	120730459	120731459	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026891, exon 2 of 28)	exon (NM_026891, exon 2 of 28)	558.0	NM_026891	68968.0	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	44.05	34.56	29.6	57.35	40.12	63.5	58.09	30.51	32.48
Merged-chr10-76835924-1	chr10	76835424	76836424	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347216, intron 2 of 15)	intron (NM_001347216, intron 2 of 15)	-13112.0	NR_152849	59093.0	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	2.86	1.38	5.55	2.7	0.47	3.22	1.06	0.0	7.49
Merged-chr4-45820234-1	chr4	45819734	45820734	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018741, intron 1 of 4)	intron (NM_018741, intron 1 of 4)	6593.0	NM_018741	75426.0	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	8.58	2.3	1.85	3.37	3.27	9.65	6.34	2.21	5.62
Merged-chr11-107241924-1	chr11	107241424	107242424	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 6 of 9)	MTE2b|LTR|ERVL-MaLR	-52543.0	NM_001161329	68979.0	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	10.87	6.91	7.4	8.77	4.2	6.43	8.45	6.63	4.37
Merged-chr14-47541471-1	chr14	47540971	47541971	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172599, exon 10 of 10)	3' UTR (NM_172599, exon 10 of 10)	26963.0	NM_172599	100504663.0	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	12.01	13.36	22.2	22.94	19.13	14.47	41.19	43.33	21.23
Merged-chr8-95014313-1	chr8	95013813	95014813	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001198894)	TTS (NM_001198894)	-3379.0	NM_173036	54672.0	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	4.0	3.23	12.02	3.37	7.46	6.43	9.51	10.61	2.5
Merged-chr4-21712403-1	chr4	21711903	21712903	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	-15298.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	1.72	0.92	3.7	1.35	0.93	1.61	1.06	0.44	5.62
Merged-chr10-120954516-1	chr10	120954016	120955016	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081193, intron 1 of 12)	intron (NM_001081193, intron 1 of 12)	24814.0	NM_001081193	380664.0	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	5.72	1.38	0.0	2.7	3.27	3.22	6.34	2.21	1.87
Merged-chr6-140712996-1	chr6	140712496	140713496	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86111.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	1.14	3.23	1.85	3.37	0.93	0.0	3.17	1.33	1.25
Merged-chr11-20794374-1	chr11	20793874	20794874	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36734.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	1.14	2.3	1.85	5.4	0.93	4.82	4.22	1.77	1.25
Merged-chr14-70833974-1	chr14	70833474	70834474	+	664.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18959.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	2.29	4.15	1.85	4.72	2.33	2.41	16.9	8.84	15.61
Merged-chr11-46449049-1	chr11	46448549	46449549	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5882.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	5.72	7.37	8.32	15.52	8.86	11.25	7.39	6.63	14.99
Merged-chr9-111608931-2	chr9	111608435	111609435	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001324546, intron 1 of 9)	intron (NM_001324546, intron 1 of 9)	81413.0	NM_016853	20840.0	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	9.15	3.23	1.85	1.35	0.0	3.22	1.06	5.31	3.75
Merged-chr9-106171621-1	chr9	106171121	106172121	+	664.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	692.0	NM_029896	77305.0	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	106.4	64.51	82.32	87.04	58.31	106.9	70.76	52.62	43.72
Merged-chr10-17951024-3	chr10	17950512	17951512	+	663.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2945.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	8.01	2.76	5.55	8.77	6.53	10.45	1.06	4.42	2.5
Merged-chr15-83435482-2	chr15	83434982	83435982	+	663.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358643, intron 1 of 9)	intron (NM_001358643, intron 1 of 9)	-2632.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	19.45	15.67	12.95	19.57	14.46	18.49	17.96	15.92	13.74
Merged-chrX-106151409-2	chrX	106150912	106151912	+	663.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	intron (NM_205820, intron 2 of 2)	8137.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	26.31	22.12	21.27	42.51	33.12	42.6	16.9	19.9	21.23
Merged-chr10-61176018-2	chr10	61175530	61176530	+	663.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017407, intron 2 of 3)	intron (NM_001017407, intron 2 of 3)	768.0	NM_023064	65971.0	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.57	1.38	0.0	7.42	0.47	0.8	1.06	0.0	3.75
Merged-chr1-107516071-2	chr1	107515578	107516578	+	663.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011111, intron 2 of 7)	intron (NM_011111, intron 2 of 7)	4568.0	NM_011111	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	8.58	6.91	7.4	6.75	6.06	1.61	10.56	3.1	8.74
Merged-chr4-154968115-2	chr4	154967587	154968587	+	663.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172990, intron 1 of 18)	L1MA4|LINE|L1	3964.0	NR_131230	269614.0	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	12.01	9.68	6.47	8.77	1.87	7.23	26.4	6.63	20.61
Merged-chr6-125600340-3	chr6	125599854	125600854	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 12 of 51)	intron (NM_011708, intron 12 of 51)	47406.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	5.15	3.23	1.85	2.02	1.87	1.61	1.06	3.1	3.75
Merged-chr3-106546212-3	chr3	106545713	106546713	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293694, intron 1 of 8)	intron (NM_001293694, intron 1 of 8)	1412.0	NM_001357818	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	129.86	163.12	64.75	107.28	104.96	99.67	191.17	185.27	95.55
Merged-chr7-114190932-3	chr7	114190451	114191451	+	663.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63729.0	NM_033370	70349.0	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	24.6	25.34	17.57	29.01	24.26	22.51	44.36	38.47	31.23
Merged-chr13-118538924-1	chr13	118538424	118539424	+	663.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17244.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0.0	3.69	2.77	3.37	2.33	0.8	4.22	3.1	1.25
Merged-chr1-161329416-2	chr1	161328920	161329920	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66018.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	2.29	3.69	4.62	2.7	4.67	0.0	2.11	2.65	9.99
Merged-chr2-70742769-2	chr2	70742262	70743262	+	663.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172664, intron 10 of 19)	L2b|LINE|L2	81253.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	5.15	5.07	1.85	3.37	5.13	6.43	6.34	4.42	2.5
Merged-chr11-46808486-2	chr11	46807990	46808990	+	663.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2309.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	9.72	17.51	12.02	18.22	12.6	20.09	15.84	14.59	11.87
Merged-chr19-11824578-2	chr19	11824078	11825078	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4446.0	NM_146936	258938.0	Mm.451671	NM_146936	ENSMUSG00000048292	Olfr1417	MOR266-2	olfactory receptor 1417	protein-coding	14.3	7.37	5.55	18.22	7.46	14.47	12.67	12.38	8.74
Merged-chr2-84645666-2	chr2	84645199	84646199	+	663.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	3781.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	38.9	37.32	18.5	26.99	27.99	32.96	70.76	42.01	55.58
Merged-chr8-105991040-3	chr8	105990548	105991548	+	663.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176913, intron 1 of 11)	intron (NM_176913, intron 1 of 11)	725.0	NM_001301204	319446.0	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	8.58	6.91	3.7	15.52	9.8	8.04	10.56	11.5	6.25
Merged-chr5-52461860-3	chr5	52461380	52462380	+	663.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 1 of 11)	URR1B|DNA|hAT-Charlie	9663.0	NM_001256059	100503884.0	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	6.86	5.53	11.1	8.1	6.53	3.22	7.39	2.65	1.25
Merged-chr17-25476114-1	chr17	25475614	25476614	+	663.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027951, intron 5 of 5)	intron (NM_027951, intron 5 of 5)	4524.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	5.72	2.76	3.7	4.72	0.93	2.41	3.17	0.44	1.87
Merged-chr1-45824622-3	chr1	45824145	45825145	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	29479.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	40.62	54.83	39.77	52.63	52.72	46.62	65.48	63.67	39.35
Merged-chr15-86167232-1	chr15	86166732	86167732	+	663.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145475, intron 1 of 12)	intron (NM_145475, intron 1 of 12)	-18496.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	100.68	80.18	78.62	145.74	147.42	143.07	196.45	233.46	76.19
Merged-chr1-153559429-3	chr1	153558933	153559933	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9719.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	5.72	0.92	0.0	0.67	1.87	0.8	3.17	0.44	5.0
Merged-chr2-5682184-3	chr2	5681694	5682694	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	MER21C|LTR|ERVL	-6148.0	NM_001290376	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.58	4.15	7.4	16.87	10.26	6.43	9.51	4.86	3.75
Merged-chr4-133592812-1	chr4	133592312	133593312	+	663.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8439.0	NM_133884	100210.0	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	3.43	2.76	7.4	2.7	2.8	0.0	7.39	1.77	3.75
Merged-chr5-137837320-2	chr5	137836846	137837846	+	663.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1068.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	17.16	10.14	3.7	20.24	8.4	13.66	22.18	10.61	13.12
Merged-chr9-108726284-3	chr9	108725772	108726772	+	663.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008924, intron 4 of 10)	L1MA5|LINE|L1	34129.0	NM_008924	19087.0	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	10.3	7.83	1.85	14.17	4.67	8.04	8.45	6.19	3.75
Merged-chr19-18619844-1	chr19	18619344	18620344	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	11969.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	26.89	29.49	21.27	37.11	38.72	26.53	42.25	35.82	29.35
Merged-chr1-128548891-2	chr1	128548388	128549388	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	43411.0	NM_009911	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.72	5.99	5.55	8.77	5.13	1.61	28.52	11.05	8.12
Merged-chr9-66895852-2	chr9	66895363	66896363	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	23842.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	120.7	164.96	78.62	120.77	90.5	72.34	104.56	136.63	66.82
Merged-chr14-34570506-1	chr14	34570006	34571006	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039073, intron 6 of 14)	intron (NM_001039073, intron 6 of 14)	18101.0	NM_001039074	24131.0	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	1.72	0.0	1.85	8.1	0.93	3.22	0.0	2.21	0.0
Merged-chr4-152173233-2	chr4	152172735	152173735	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4865.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	3.43	1.38	0.0	0.67	0.47	3.22	2.11	2.21	2.5
Merged-chr11-116198337-1	chr11	116197837	116198837	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027107)	promoter-TSS (NM_027107)	-518.0	NM_027107	69535.0	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	239.12	203.21	131.34	227.38	207.6	171.21	186.94	186.59	101.17
Merged-chr2-4889695-2	chr2	4889197	4890197	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175400, intron 3 of 8)	intron (NM_175400, intron 3 of 8)	8133.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	18.88	17.97	11.1	24.29	31.26	15.27	19.01	19.01	19.36
Merged-chr2-31162270-1	chr2	31161770	31162770	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178760, intron 1 of 17)	intron (NM_178760, intron 1 of 17)	9954.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	8.01	5.53	3.7	12.82	9.8	3.22	8.45	2.21	6.25
Merged-chr11-77368933-1	chr11	77368433	77369433	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	20653.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	52.63	46.08	25.9	39.13	19.13	39.39	49.64	37.14	34.35
Merged-chr3-148279216-1	chr3	148278716	148279716	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	675419.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	6.86	4.15	0.92	6.07	4.2	1.61	7.39	0.88	1.25
Merged-chr13-49421661-2	chr13	49421134	49422134	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	20.0	NM_001276399	75678.0	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	41.19	33.64	35.15	41.16	26.59	43.4	26.4	18.57	11.87
Merged-chr10-8844130-1	chr10	8843630	8844630	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 2 of 19)	RMER20B|LTR|ERVK	41940.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	23.45	26.26	20.35	25.64	24.26	34.56	17.96	15.48	15.61
Merged-chr4-122849513-2	chr4	122848997	122849997	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008917, intron 5 of 8)	intron (NM_008917, intron 5 of 8)	13270.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	18.88	14.75	18.5	20.24	11.2	28.94	22.18	20.78	17.49
Merged-chr8-72244827-1	chr8	72244327	72245327	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007456, intron 1 of 11)	intron (NM_007456, intron 1 of 11)	4809.0	NM_007456	11767.0	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	4.58	3.23	11.1	12.14	7.0	6.43	8.45	1.77	6.87
Merged-chr4-40757251-2	chr4	40756761	40757761	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021535, intron 1 of 11)	intron (NM_021535, intron 1 of 11)	624.0	NM_021535	74255.0	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	164.75	182.93	150.77	151.14	173.54	135.84	158.43	158.74	116.16
Merged-chr6-117496600-2	chr6	117496098	117497098	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152214, intron 2 of 2)	intron (NR_152214, intron 2 of 2)	1363.0	NR_152214	100126203.0	Mm.217172	NR_152214		6820426E19Rik	Gm43983	RIKEN cDNA 6820426E19 gene	ncRNA	11.44	8.75	7.4	18.89	12.6	6.43	24.29	16.36	3.75
Merged-chr17-62458997-1	chr17	62458497	62459497	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	422320.0	NM_207654	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	1.72	5.53	0.0	1.35	4.2	1.61	0.0	0.88	3.75
Merged-chr15-76806014-3	chr15	76805525	76806525	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	L1M4|LINE|L1	12145.0	NM_001168288	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	39.47	34.1	18.5	35.76	27.99	32.96	19.01	34.49	23.73
Merged-chr10-42487076-2	chr10	42486580	42487580	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8515.0	NM_145743	215951.0	Mm.89646	NM_145743	ENSMUSG00000038302	Afg1l	CG8520|Lace1	AFG1 like ATPase	protein-coding	16.59	13.82	7.4	10.12	14.93	8.84	17.96	12.82	8.74
Merged-chr4-33303223-1	chr4	33302723	33303723	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-7088.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	2.86	2.3	2.77	2.02	1.87	0.0	2.11	0.88	1.25
Merged-chr8-84391034-1	chr8	84390534	84391534	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-24330.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.86	4.15	10.17	8.77	7.0	11.25	0.0	2.21	5.0
Merged-chr17-43166334-1	chr17	43165834	43166834	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-8043.0	NR_045153	545207.0	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	3.43	3.23	0.92	2.02	6.06	3.22	0.0	4.86	0.0
Merged-chr17-72945428-1	chr17	72944928	72945928	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	27123.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	6.86	11.98	12.95	6.75	6.06	6.43	8.45	8.84	11.87
Merged-chr11-75563956-1	chr11	75563456	75564456	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 9 of 13)	intron (NM_001199284, intron 9 of 13)	12527.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	111.55	82.02	86.95	121.45	73.71	110.12	62.31	64.11	63.08
Merged-chr1-75477422-2	chr1	75476975	75477975	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001001566, exon 2 of 4)	exon (NM_001001566, exon 2 of 4)	1996.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.57	2.76	0.0	0.0	0.47	3.22	0.0	0.0	2.5
Merged-chr18-50081434-2	chr18	50080912	50081912	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134131, intron 1 of 1)	Lx7|LINE|L1	-27750.0	NR_155293	102635912.0	Mm.440627	NR_155293		C030005K06Rik	-	RIKEN cDNA C030005K06 gene	ncRNA	27.46	31.79	45.32	18.22	17.73	28.94	35.91	29.18	29.98
Merged-chr2-12059676-2	chr2	12059161	12060161	+	663.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-241585.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	14.87	17.51	26.82	13.49	18.66	9.65	15.84	11.5	17.49
Merged-chrX-134308698-2	chrX	134308199	134309199	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145924, intron 2 of 22)	intron (NM_145924, intron 2 of 22)	615.0	NM_001305631	102920.0	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	27.46	22.12	5.55	22.27	14.0	25.72	34.85	30.07	14.36
Merged-chr6-71149693-1	chr6	71149193	71150193	+	663.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5313.0	NM_178413	232078.0	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	7.44	5.07	3.7	6.07	1.87	4.82	2.11	3.1	7.49
Merged-chr3-57740061-2	chr3	57739554	57740554	+	663.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_130743, intron 1 of 9)	intron (NR_130743, intron 1 of 9)	3997.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	13.16	14.75	9.25	9.45	14.46	27.33	13.73	9.29	11.24
Merged-chr4-130896593-2	chr4	130896103	130897103	+	663.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16731.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	8.58	1.38	0.0	5.4	1.87	0.0	3.17	0.88	2.5
Merged-chr10-94526017-3	chr10	94525512	94526512	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172051, intron 1 of 3)	Tigger5|DNA|TcMar-Tigger	11155.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	40.62	36.86	12.95	32.39	25.66	20.09	35.91	45.1	14.36
Merged-chr2-170195720-1	chr2	170195220	170196220	+	663.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53045.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	5.15	2.3	4.62	8.77	4.67	4.82	17.96	4.86	6.87
Merged-chr12-3856910-1	chr12	3856410	3857410	+	663.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	5334.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	88.1	68.2	75.85	89.06	79.31	110.92	103.51	107.89	43.09
Merged-chr15-83097824-3	chr15	83097331	83098331	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2374.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	3.43	2.3	5.55	2.02	0.93	1.61	2.11	2.21	3.75
Merged-chr5-44218710-1	chr5	44218210	44219210	+	663.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173764, intron 1 of 13)	intron (NM_173764, intron 1 of 13)	7896.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	2.29	2.3	1.85	4.72	1.87	0.0	6.34	1.77	0.62
Merged-chr12-111038494-3	chr12	111037997	111038997	+	663.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1301.0	NM_198023	217864.0	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	293.46	352.04	259.91	240.2	285.97	189.69	346.43	402.37	206.09
Merged-chr9-47652727-3	chr9	47652225	47653225	+	663.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	122373.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	51.48	81.1	121.17	86.36	87.7	97.26	80.27	86.22	57.46
Merged-chr2-27426042-2	chr2	27425542	27426542	+	663.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	CpG	1566.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	44.62	53.91	98.05	51.28	69.98	75.56	68.65	50.85	45.59
Merged-chr2-69822990-1	chr2	69822490	69823490	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360394, intron 1 of 3)	CpG	149.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	4.0	4.15	3.7	7.42	1.87	7.23	4.22	0.88	3.75
Merged-chr4-148607981-2	chr4	148607466	148608466	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001003893, exon 7 of 11)	exon (NM_001003893, exon 7 of 11)	5422.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	2.29	1.84	8.32	5.4	2.33	1.61	2.11	1.77	7.49
Merged-chr1-43804345-3	chr1	43803842	43804842	+	663.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026430, intron 4 of 14)	Lx8|LINE|L1	23366.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	13.16	6.91	12.02	16.19	14.93	6.43	11.62	7.07	24.36
Merged-chr4-133905377-2	chr4	133904876	133905876	+	663.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-17579.0	NM_009097	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	8.01	11.06	14.8	22.94	11.66	19.29	12.67	6.63	2.5
Merged-chr19-40343197-1	chr19	40342697	40343697	+	663.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034963, intron 12 of 22)	Tigger16a|DNA|TcMar-Tigger	59113.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.0	5.07	6.47	3.37	3.27	1.61	1.06	3.1	5.0
Merged-chr13-28688008-3	chr13	28687486	28688486	+	663.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045054, intron 3 of 7)	intron (NR_045054, intron 3 of 7)	22887.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	6.86	4.61	3.7	8.77	4.67	6.43	3.17	1.77	3.12
Merged-chr5-117089386-2	chr5	117088906	117089906	+	663.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26587.0	NM_001122666	71954.0	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	6.29	6.91	3.7	6.07	9.33	10.45	7.39	4.42	5.62
Merged-chr8-109014934-2	chr8	109014420	109015420	+	663.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-60302.0	NR_126329	628686.0	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	1.72	2.76	5.55	3.37	2.8	0.0	7.39	3.1	5.0
Merged-chr2-48988205-2	chr2	48987726	48988726	+	663.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029924, intron 1 of 16)	intron (NM_029924, intron 1 of 16)	-37992.0	NM_001355296	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	5.72	4.61	7.4	4.72	5.13	2.41	6.34	9.29	9.37
Merged-chr12-110418993-3	chr12	110418551	110419551	+	663.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-28128.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	4.0	3.23	0.0	4.72	1.87	0.0	1.06	0.88	6.25
Merged-chr7-30324301-1	chr7	30323801	30324801	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-1926.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	9.15	5.53	1.85	11.47	4.67	12.86	9.51	8.84	5.0
Merged-chr19-53421927-1	chr19	53421427	53422427	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31293.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	6.86	2.3	1.85	16.87	14.46	8.84	5.28	2.65	1.25
Merged-chr11-111954947-1	chr11	111954447	111955447	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	756409.0	NR_024085	217294.0	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	2.29	1.84	5.55	0.0	5.6	5.63	2.11	2.21	6.25
Merged-chr18-34781261-2	chr18	34780758	34781758	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081256, intron 1 of 23)	intron (NM_001081256, intron 1 of 23)	4250.0	NM_001081256	277250.0	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	15.45	15.21	29.6	19.57	13.06	15.27	24.29	21.22	15.61
Merged-chr4-86823361-1	chr4	86822861	86823861	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_184088, intron 21 of 31)	B3|SINE|B2	34006.0	NM_009096	20104.0	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	3.43	1.38	1.85	0.67	1.87	0.0	4.22	0.88	2.5
Merged-chr12-32730946-1	chr12	32730446	32731446	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89389.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	8.58	7.37	1.85	10.8	5.13	3.22	6.34	5.31	6.25
Merged-chr12-32431190-1	chr12	32430690	32431690	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	52401.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.57	1.38	0.0	0.0	3.73	0.0	6.34	4.86	7.49
Merged-chr8-11456133-1	chr8	11455633	11456633	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	MTE2b|LTR|ERVL-MaLR	-21796.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	23.45	25.8	31.45	31.04	14.0	30.54	33.8	24.76	19.98
Merged-chr11-5974306-1	chr11	5973806	5974806	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001174054, intron 17 of 20)	intron (NM_001174054, intron 17 of 20)	18548.0	NM_019661	56418.0	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	13.73	4.15	9.25	2.7	0.93	3.22	6.34	7.07	8.74
Merged-chr11-88864113-1	chr11	88863613	88864613	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126433, intron 3 of 4)	CpG	473.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	17.73	10.6	12.02	12.14	11.2	4.02	6.34	3.54	5.0
Merged-chr6-124445724-1	chr6	124445224	124446224	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	17020.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	6.86	9.68	7.4	6.07	6.06	10.45	8.45	4.86	7.49
Merged-chr10-34190688-1	chr10	34190188	34191188	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	16863.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	37.18	57.14	41.62	29.01	21.46	36.17	65.48	51.29	43.09
Merged-chr1-152403084-1	chr1	152402584	152403584	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	3217.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	3.43	0.92	8.32	5.4	3.27	3.22	3.17	4.42	3.75
Merged-chr5-105844529-1	chr5	105844029	105845029	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32039.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	12.59	5.07	2.77	10.12	7.0	8.04	5.28	8.4	1.25
Merged-chr17-56139981-1	chr17	56139481	56140481	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130456, intron 1 of 16)	CpG	362.0	NM_001130456	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	2.86	0.92	0.0	3.37	1.4	1.61	2.11	0.0	3.12
Merged-chr3-101779094-1	chr3	101778594	101779594	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	57129.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	3.43	4.15	7.4	5.4	0.47	6.43	4.22	1.33	5.0
Merged-chr15-63978196-1	chr15	63977696	63978696	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MTC|LTR|ERVL-MaLR	19870.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.58	7.37	7.4	6.75	4.2	8.84	10.56	7.52	11.87
Merged-chr8-122369774-1	chr8	122369274	122370274	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6835.0	NM_001310650	76014.0	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	5.72	1.84	1.85	3.37	1.87	1.61	1.06	0.0	0.0
Merged-chr8-68391428-1	chr8	68390928	68391928	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 5 of 9)	intron (NM_172753, intron 5 of 9)	22969.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	5.72	5.99	7.4	9.45	9.33	14.47	5.28	3.1	0.0
Merged-chr5-65491914-3	chr5	65491386	65492386	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133697, intron 1 of 4)	intron (NM_133697, intron 1 of 4)	949.0	NM_133697	68552.0	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	250.56	258.5	138.74	217.26	224.39	200.14	230.25	271.49	155.51
Merged-chr7-38124270-2	chr7	38123771	38124771	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-16781.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	9.15	11.06	5.55	8.1	8.4	8.84	4.22	2.65	5.0
Merged-chr10-59748989-1	chr10	59748489	59749489	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359267, intron 4 of 11)	L1MEf|LINE|L1	46426.0	NM_001291443	216001.0	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	4.58	4.61	7.4	14.17	6.53	11.25	11.62	2.65	3.75
Merged-chr4-143216465-1	chr4	143215965	143216965	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-3756.0	NM_001256380	110593.0	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	2.29	0.92	5.55	2.7	2.8	4.82	1.06	3.98	2.5
Merged-chr2-5793063-1	chr2	5792563	5793563	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51971.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	8.58	4.15	7.4	23.62	10.26	18.49	11.62	17.24	9.99
Merged-chr2-78419094-1	chr2	78418594	78419594	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181547.0	NM_177843	329436.0	Mm.235448	NM_177843		Gm14461	A830093M07	predicted gene 14461	protein-coding	1.72	2.76	1.85	2.7	6.53	1.61	5.28	3.98	9.37
Merged-chr8-56430311-1	chr8	56429811	56430811	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	54657.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	6.86	6.91	9.25	4.72	8.86	5.63	9.51	11.05	9.99
Merged-chr11-67564862-1	chr11	67564362	67565362	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008088, intron 1 of 13)	MLT1D|LTR|ERVL-MaLR	-21638.0	NM_001109657	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	6.86	4.61	1.85	3.37	1.4	1.61	22.18	12.38	1.87
Merged-chr11-48856208-2	chr11	48855663	48856663	+	663.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15257.0	NM_001355757	15944.0	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm	immunity-related GTPase family M member 1	protein-coding	56.63	85.25	59.2	60.72	55.51	54.66	58.09	76.94	38.72
Merged-chr18-38890415-1	chr18	38889915	38890915	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010197, intron 1 of 3)	intron (NM_010197, intron 1 of 3)	-2041.0	NM_001033789	545253.0	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	2.29	4.61	1.85	5.4	0.93	4.82	2.11	2.65	1.25
Merged-chr2-158410444-1	chr2	158409944	158410944	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291137, intron 1 of 30)	CpG	591.0	NM_001291138	228850.0	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	136.15	90.77	55.5	108.63	83.04	89.22	99.28	74.73	48.71
Merged-chr3-116483899-1	chr3	116483399	116484399	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	24276.0	NM_025517	66368.0	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	16.59	17.51	37.92	13.49	17.26	17.68	26.4	21.67	26.23
Merged-chr2-167345219-2	chr2	167344730	167345730	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019835, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	3948.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	29.75	17.05	14.8	16.87	13.06	28.94	27.46	11.05	14.36
Merged-chr16-9515913-2	chr16	9515425	9516425	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	476608.0	NM_008170	14811.0	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|GluRepsilon1|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	1.72	6.45	3.7	3.37	1.87	1.61	5.28	3.1	5.0
Merged-chr10-83359082-1	chr10	83358582	83359582	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1139.0	NM_026579	28109.0	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	6.86	10.6	11.1	11.47	3.73	1.61	8.45	11.94	7.49
Merged-chr19-4214122-1	chr19	4213622	4214622	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310038)	promoter-TSS (NM_001310038)	-116.0	NR_132308	105948585.0	Mm.32518	NR_132308		Gm45928	Clcf1-pold4	predicted gene, 45928	ncRNA	146.45	100.91	126.72	126.85	130.62	117.35	115.12	72.07	54.33
Merged-chr6-17558132-1	chr6	17557632	17558632	+	663.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 17 of 21)	intron (NM_008591, intron 17 of 21)	-78878.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	5.15	1.84	0.0	5.4	3.27	7.23	2.11	3.54	7.49
Merged-chr10-78143963-1	chr10	78143463	78144463	+	663.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25805.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	33.18	26.26	26.82	27.66	16.79	16.88	47.53	25.65	5.62
Merged-chr13-52275882-2	chr13	52275379	52276379	+	662.93335	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	179138.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.72	0.92	0.0	3.37	0.93	1.61	3.17	0.0	1.87
Merged-chr11-40693697-3	chr11	40693212	40694212	+	662.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199274, intron 1 of 6)	intron (NM_001199274, intron 1 of 6)	-1030.0	NM_134017	108645.0	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	57.78	83.86	80.47	73.54	83.97	69.93	106.67	110.1	71.82
Merged-chr7-100533869-3	chr7	100533372	100534372	+	662.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-3228.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	70.36	101.37	76.77	78.27	68.58	74.75	79.21	109.66	76.82
Merged-chr11-61142459-3	chr11	61141962	61142962	+	662.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021349, intron 2 of 3)	intron (NM_021349, intron 2 of 3)	1627.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	22.88	17.05	18.5	26.31	16.33	36.17	9.51	11.05	6.25
Merged-chr12-80014524-3	chr12	80014037	80015037	+	662.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78273.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	8.58	5.07	5.55	12.14	21.46	17.68	9.51	9.73	5.0
Merged-chr7-102223830-2	chr7	102223290	102224290	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111938, intron 2 of 4)	PB1D10|SINE|Alu	762.0	NR_111937	233575.0	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	32.61	47.0	61.05	31.04	27.99	38.58	67.6	60.13	59.33
Merged-chr17-34671657-2	chr17	34671156	34672156	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031176, exon 2 of 33)	exon (NM_031176, exon 2 of 33)	1121.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	9.72	4.61	1.85	6.07	6.53	1.61	2.11	2.65	1.25
Merged-chr14-31196145-1	chr14	31195645	31196645	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347583, intron 3 of 13)	B2_Mm2|SINE|B2	10681.0	NM_022656	64652.0	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	35.47	32.72	28.67	43.18	33.59	62.7	30.63	23.88	36.22
Merged-chr11-51265321-2	chr11	51264856	51265856	+	662.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304744, intron 1 of 10)	intron (NM_001304744, intron 1 of 10)	-1694.0	NM_001358281	193286.0	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	63.5	64.97	78.62	62.07	60.65	85.2	90.83	72.07	73.69
Merged-chr15-97064258-1	chr15	97063758	97064758	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8302.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	1.14	7.37	10.17	11.47	3.73	4.82	7.39	5.75	2.5
Merged-chr16-92674964-1	chr16	92674464	92675464	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	MIR|SINE|MIR	22365.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	108.69	124.87	86.95	110.65	93.3	91.63	49.64	61.9	31.85
Merged-chrUn_JH584304-106828-1	chrUn_JH584304	106328	107328	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-47139.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	73.93	67.65	0.0
Merged-chr14-21854028-1	chr14	21853528	21854528	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176925, exon 3 of 3)	3' UTR (NM_176925, exon 3 of 3)	-5118.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	7.44	11.52	14.8	6.75	7.46	6.43	12.67	10.61	12.49
Merged-chr6-148621751-1	chr6	148621251	148622251	+	662.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7442.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	6.86	5.99	12.95	6.07	7.0	9.65	11.62	3.1	6.25
Merged-chr5-105405189-1	chr5	105404689	105405689	+	662.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10586.0	NM_001033550	433926.0	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	2210408K08Rik|R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	8.01	4.61	5.55	4.05	2.8	0.0	3.17	1.33	0.62
Merged-chr15-25635214-1	chr15	25634714	25635714	+	662.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	MTC|LTR|ERVL-MaLR	12664.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	38.33	15.21	13.87	12.14	6.06	3.22	15.84	9.29	6.87
Merged-chr11-103965720-2	chr11	103965220	103966220	+	662.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_001304574	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	184.2	221.18	120.24	164.63	84.44	109.32	129.91	168.47	127.4
Merged-chr11-44528664-2	chr11	44528180	44529180	+	662.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 2 of 5)	MTD|LTR|ERVL-MaLR	9303.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	37.76	47.46	31.45	57.35	36.85	47.42	110.9	93.3	50.59
Merged-chr12-3763309-2	chr12	3762812	3763812	+	662.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-43668.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	6.86	9.22	14.8	2.7	7.46	8.04	9.51	7.96	6.25
Merged-chr11-79528810-3	chr11	79528276	79529276	+	662.56665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	1833.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	237.97	279.24	175.74	203.76	160.95	159.95	205.96	298.46	124.91
Merged-chr11-95507453-1	chr11	95506953	95507953	+	662.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7112.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	10.87	9.22	3.7	5.4	1.87	1.61	5.28	1.77	2.5
Merged-chr14-46145852-1	chr14	46145352	46146352	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61825.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	6.29	5.53	5.55	9.45	4.2	4.02	2.11	3.98	0.0
Merged-chr11-116282445-2	chr11	116281957	116282957	+	662.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010254, intron 1 of 1)	intron (NM_010254, intron 1 of 1)	1518.0	NM_010254	14428.0	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	1.72	1.84	3.7	4.72	2.33	4.02	2.11	2.65	1.25
Merged-chr1-55804118-2	chr1	55803609	55804609	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127132.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	10.87	4.61	14.8	10.8	5.13	6.43	11.62	6.19	8.12
Merged-chr7-24175088-2	chr7	24174599	24175599	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	77.0	NM_001029933	232966.0	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	1.72	2.3	3.7	0.67	3.27	6.43	3.17	2.65	6.87
Merged-chr15-81301354-2	chr15	81300856	81301856	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-49494.0	NR_077230	78102.0	Mm.296832	NR_077229	ENSMUSG00000115970	8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	4.58	0.46	0.0	5.4	4.67	1.61	4.22	2.65	1.25
Merged-chr8-86920527-1	chr8	86920027	86921027	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35269.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	9.15	5.07	1.85	4.05	4.67	9.65	2.11	0.88	8.12
Merged-chr4-137469071-2	chr4	137468571	137469571	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008305, intron 1 of 96)	CpG	268.0	NM_008305	15530.0	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	3.43	4.61	0.92	12.14	5.13	3.22	10.56	5.75	3.12
Merged-chr17-34915499-2	chr17	34914998	34915998	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023557, intron 1 of 20)	intron (NM_023557, intron 1 of 20)	1032.0	NM_023557	70129.0	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22|mTPPT1	solute carrier family 44, member 4	protein-coding	2.86	7.37	1.85	6.07	2.33	12.86	5.28	2.21	0.62
Merged-chr3-60617974-1	chr3	60617474	60618474	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253711, intron 6 of 7)	MIRb|SINE|MIR	116795.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	9.15	6.91	5.55	8.1	2.8	12.06	9.51	4.86	9.37
Merged-chr4-128796607-2	chr4	128796107	128797107	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081098, intron 1 of 8)	intron (NM_001081098, intron 1 of 8)	9505.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	18.88	9.68	12.95	26.31	10.73	11.25	8.45	8.84	8.12
Merged-chr16-14352266-2	chr16	14351760	14352760	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-9298.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	121.85	112.43	97.12	102.56	90.5	101.28	125.69	186.59	87.43
Merged-chr3-15160086-1	chr3	15159586	15160586	+	662.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172216.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	4.0	3.69	3.7	5.4	6.06	6.43	4.22	2.21	1.87
Merged-chrX-73798645-2	chrX	73798148	73799148	+	662.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290540, intron 1 of 5)	intron (NM_001290540, intron 1 of 5)	11625.0	NM_009279	20832.0	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|SSR-delta|TRAP-delta|Trap	signal sequence receptor, delta	protein-coding	2.29	0.0	3.7	2.02	0.47	1.61	3.17	2.65	3.75
Merged-chr16-57499588-2	chr16	57499073	57500073	+	662.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-49669.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	18.88	27.19	12.02	20.24	11.66	7.23	29.57	21.67	3.75
Merged-chr15-41831611-2	chr15	41831099	41832099	+	662.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130164, intron 1 of 5)	intron (NM_001130164, intron 1 of 5)	641.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	54.35	125.79	98.97	59.38	73.71	61.89	73.93	127.34	46.22
Merged-chr3-95657359-2	chr3	95656849	95657849	+	662.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1372.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	76.08	88.01	69.37	47.9	33.59	53.85	90.83	86.66	69.32
Merged-chr10-80822227-1	chr10	80821727	80822727	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4429.0	NM_001301034	18245.0	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	22.88	13.36	10.17	27.66	17.26	27.33	12.67	17.69	16.86
Merged-chr16-3236818-1	chr16	3236318	3237318	+	662.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-355580.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	8.01	3.23	12.95	9.45	4.2	10.45	1.06	1.77	9.37
Merged-chr3-87364830-3	chr3	87364317	87365317	+	662.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6936.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	34.32	46.08	28.67	27.66	26.12	20.9	55.98	68.54	44.34
Merged-chr15-80076462-1	chr15	80075962	80076962	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2117.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	50.34	54.37	78.62	64.1	46.65	105.3	43.3	44.66	38.1
Merged-chr1-62328966-1	chr1	62328466	62329466	+	662.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 16 of 22)	intron (NM_001081050, intron 16 of 22)	-192857.0	NR_151537	105243940.0		NR_151537		Pard3bos2	Gm12747	par-3 family cell polarity regulator beta, opposite strand 2	ncRNA	2.29	4.15	3.7	2.02	4.67	5.63	2.11	3.98	2.5
Merged-chr9-61389582-3	chr9	61389033	61390033	+	662.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 4 of 19)	intron (NM_001083928, intron 4 of 19)	17167.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	11.44	7.37	9.25	7.42	3.73	4.82	5.28	4.86	2.5
Merged-chr13-21771641-1	chr13	21771141	21772141	+	662.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	8984.0	NM_020034	56702.0	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	2.29	3.23	7.4	3.37	0.93	5.63	3.17	1.77	6.87
Merged-chr1-136606014-2	chr1	136605516	136606516	+	662.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18885.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	8.58	11.52	0.0	13.49	13.53	5.63	12.67	15.03	3.75
Merged-chr13-43788564-2	chr13	43788056	43789056	+	662.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009856, intron 2 of 4)	intron (NM_009856, intron 2 of 4)	3444.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	257.42	216.11	143.37	211.86	161.41	140.66	153.15	198.98	117.41
Merged-chr4-139337250-2	chr4	139336767	139337767	+	662.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15309.0	NM_001290810	69902.0	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	2.29	3.69	14.8	0.67	0.47	1.61	1.06	3.98	3.75
Merged-chr15-62389519-2	chr15	62389021	62390021	+	662.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-170070.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.29	10.14	0.0	4.72	3.27	4.82	5.28	4.42	3.75
Merged-chr4-124752583-1	chr4	124752083	124753083	+	662.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008385, intron 7 of 23)	intron (NM_008385, intron 7 of 23)	-1229.0	NR_151694	102634646.0	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	12.59	10.14	9.25	12.14	11.66	14.47	9.51	9.73	6.25
Merged-chr11-89989160-2	chr11	89988680	89989680	+	662.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316372, intron 2 of 4)	intron (NM_001316372, intron 2 of 4)	13714.0	NM_008796	18559.0	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	2.29	5.07	0.0	4.72	5.6	2.41	6.34	7.96	3.75
Merged-chr6-73367809-3	chr6	73367306	73368306	+	662.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101861.0	NM_025737	66740.0	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	4.0	1.84	0.0	0.67	1.87	4.82	3.17	2.65	1.25
Merged-chr1-132298834-2	chr1	132298283	132299283	+	662.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_144810, exon 1 of 5)	5' UTR (NM_144810, exon 1 of 5)	157.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	8.58	2.76	5.55	8.77	2.8	0.0	2.11	0.88	3.75
Merged-chr9-22151115-3	chr9	22150616	22151616	+	662.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-5730.0	NM_001082532	66268.0	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	10.3	8.75	0.0	16.87	10.26	8.04	11.62	10.61	11.24
Merged-chr4-8429205-1	chr4	8428705	8429705	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-106439.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.0	3.69	0.0	4.05	0.93	5.63	3.17	1.77	2.5
Merged-chr3-135681469-1	chr3	135680969	135681969	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	10078.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	6.29	7.83	4.62	10.12	8.4	10.45	12.67	5.31	6.25
Merged-chr9-118512838-1	chr9	118512338	118513338	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018748, intron 1 of 23)	intron (NM_018748, intron 1 of 23)	6520.0	NM_018748	54214.0	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	5.72	10.6	1.85	10.12	8.86	4.82	8.45	4.42	3.75
Merged-chr17-5174671-2	chr17	5174232	5175232	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	179658.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	8.01	3.69	12.95	15.52	2.8	4.82	10.56	7.07	8.74
Merged-chr5-144770809-2	chr5	144770311	144771311	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	2019.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	41.19	44.7	50.87	43.18	34.52	53.05	73.93	73.4	53.08
Merged-chr13-76304879-1	chr13	76304379	76305379	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-80082.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	6.86	1.38	0.0	0.67	3.73	3.22	2.11	2.21	1.25
Merged-chr10-4338999-1	chr10	4338499	4339499	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031185, intron 2 of 3)	intron (NM_031185, intron 2 of 3)	48476.0	NM_001359811	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	1.14	2.76	3.7	2.7	3.73	0.0	1.06	1.33	0.62
Merged-chr2-60963061-1	chr2	60962561	60963561	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_020296, exon 1 of 14)	5' UTR (NM_020296, exon 1 of 14)	143.0	NM_020296	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	5.15	1.84	0.0	4.05	4.2	1.61	11.62	1.33	2.5
Merged-chr11-118178428-1	chr11	118177928	118178928	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	34314.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.29	2.76	9.25	11.47	4.67	12.06	9.51	3.54	14.36
Merged-chr10-42860706-1	chr10	42860206	42861206	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001359264, exon 1 of 8)	exon (NM_001359264, exon 1 of 8)	194.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	18.88	11.98	5.55	14.84	12.13	1.61	23.24	15.48	3.75
Merged-chr13-117203022-1	chr13	117202522	117203522	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-17551.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.57	0.92	2.77	2.02	3.73	1.61	4.22	2.21	5.0
Merged-chr2-114140894-1	chr2	114140394	114141394	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009702, exon 16 of 35)	exon (NM_009702, exon 16 of 35)	9676.0	NR_105968	102465982.0		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	16.59	11.52	15.72	18.22	21.46	14.47	2.11	3.54	8.12
Merged-chr7-24642655-1	chr7	24642155	24643155	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	6085.0	NM_133743	72434.0	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	2.29	1.84	0.0	4.72	3.73	3.22	2.11	1.77	3.75
Merged-chr17-33993623-1	chr17	33993123	33994123	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	6710.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	15.45	3.23	1.85	2.7	8.4	1.61	7.39	4.86	3.75
Merged-chr13-58336643-1	chr13	58336143	58337143	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175214, intron 4 of 16)	B1_Mur2|SINE|Alu	18304.0	NM_001360894	75050.0	Mm.385742	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	17.73	11.98	16.65	14.84	9.33	20.09	16.9	5.31	9.37
Merged-chr6-38534271-1	chr6	38533771	38534771	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025363)	promoter-TSS (NM_025363)	-590.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	170.47	217.03	144.29	146.41	145.08	173.62	191.17	237.89	110.54
Merged-chr3-145131508-1	chr3	145131008	145132008	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162538, intron 7 of 16)	intron (NM_001162538, intron 7 of 16)	12908.0	NM_025714	52184.0	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	3.43	5.07	5.55	2.7	0.93	3.22	3.17	1.77	3.75
Merged-chr4-66821976-1	chr4	66821476	66822476	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5575.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	10.3	14.28	13.87	10.12	8.4	11.25	5.28	9.29	5.0
Merged-chr13-54693296-1	chr13	54692796	54693796	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	664.0	NR_027395	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	181.91	199.98	177.59	153.16	132.95	141.47	203.84	197.65	139.27
Merged-chr2-36271905-1	chr2	36271405	36272405	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41479.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	56.63	48.84	27.75	56.0	36.85	26.53	34.85	31.84	24.36
Merged-chr19-8723846-1	chr19	8723346	8724346	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001161413)	promoter-TSS (NM_001161413)	359.0	NR_002896	83673.0	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	151.02	146.53	47.17	116.05	125.02	61.89	106.67	141.94	89.31
Merged-chr1-191880342-2	chr1	191879870	191880870	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26411.0	NM_009579	22782.0	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	14.3	6.91	18.5	11.47	11.66	12.86	13.73	7.96	1.25
Merged-chr4-129580272-1	chr4	129579772	129580772	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1692.0	NM_182783	230766.0	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	10.3	8.29	5.55	15.52	16.79	28.94	8.45	1.33	6.25
Merged-chr11-97850732-1	chr11	97850232	97851232	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9952.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.0	3.23	1.85	4.72	1.4	4.02	2.11	2.21	5.0
Merged-chr5-143623828-1	chr5	143623328	143624328	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	intron (NM_011182, intron 1 of 12)	1381.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	32.61	42.39	40.7	45.21	34.52	32.96	32.74	42.01	36.85
Merged-chr17-35423687-2	chr17	35423184	35424184	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER44A|DNA|TcMar-Tigger	-1163.0	NM_023124	15019.0	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	11.44	3.23	1.85	8.1	2.8	0.0	10.56	3.98	3.75
Merged-chr8-4252323-1	chr8	4251823	4252823	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133968)	promoter-TSS (NM_133968)	-779.0	NM_133968	102209.0	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	18.31	21.2	19.42	16.19	15.86	24.11	32.74	37.14	19.98
Merged-chr3-9984132-2	chr3	9983628	9984628	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28457.0	NM_001272097	16592.0	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	4.0	2.76	0.0	3.37	2.33	8.04	5.28	6.19	2.5
Merged-chr6-71555784-1	chr6	71555284	71556284	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361405, intron 2 of 6)	RMER19B|LTR|ERVK	9661.0	NM_001355674	66700.0	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	2.29	2.3	5.55	2.02	4.67	4.82	3.17	3.1	5.0
Merged-chr3-52047781-1	chr3	52047281	52048281	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	57225.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	58.35	38.25	33.3	44.53	33.12	49.83	47.53	41.12	18.74
Merged-chr14-47013044-1	chr14	47012544	47013544	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	11704.0	NM_001163433	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	8.01	7.37	3.7	14.84	4.67	5.63	6.34	6.19	2.5
Merged-chr12-30605431-1	chr12	30604931	30605931	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20988.0	NM_172049	211986.0	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	1.72	5.53	7.4	2.7	3.27	1.61	3.17	5.75	3.12
Merged-chr6-92943075-1	chr6	92942575	92943575	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015530, intron 1 of 2)	CpG	2493.0	NR_015530	330385.0	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.43	1.38	11.1	20.24	22.39	32.96	0.0	0.0	0.62
Merged-chr7-18957710-1	chr7	18957210	18958210	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001029877, exon 4 of 4)	exon (NM_001029877, exon 4 of 4)	-29814.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	12.01	11.52	15.72	18.22	8.4	9.65	11.62	6.19	11.87
Merged-chr4-47322602-3	chr4	47322113	47323113	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-30609.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	7.44	8.29	12.02	11.47	8.86	9.65	10.56	6.63	4.37
Merged-chr1-183116739-1	chr1	183116239	183117239	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278218, intron 3 of 8)	intron (NM_001278218, intron 3 of 8)	30818.0	NM_001278220	68897.0	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	5.72	5.53	19.42	6.07	4.67	17.68	11.62	4.42	5.0
Merged-chr1-173762686-1	chr1	173762186	173763186	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 1 of 8)	intron (NM_008329, intron 1 of 8)	4233.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	4.58	3.69	3.7	0.0	1.87	0.0	10.56	21.22	7.49
Merged-chr14-70231973-1	chr14	70231473	70232473	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304991, intron 10 of 14)	intron (NM_001304991, intron 10 of 14)	-24302.0	NM_011366	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.15	4.61	1.85	4.05	3.73	3.22	12.67	3.98	5.0
Merged-chr2-181930349-1	chr2	181929849	181930849	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR33|LTR|ERVK	-60877.0	NM_001205282	672125.0	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	-	predicted gene 14496	protein-coding	4.0	6.91	1.85	8.77	7.93	2.41	6.34	5.31	4.37
Merged-chr6-16885936-1	chr6	16885436	16886436	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	12505.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	29.75	27.65	45.32	33.74	9.8	28.13	41.19	40.24	30.6
Merged-chr4-6341252-1	chr4	6340752	6341752	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-24428.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	8.01	3.69	9.25	12.14	3.27	4.02	3.17	4.42	8.74
Merged-chr11-3247486-1	chr11	3246986	3247986	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037301, intron 1 of 1)	intron (NR_037301, intron 1 of 1)	18977.0	NM_007879	13494.0	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|DRG-1|NEDD-3|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	6.86	5.99	3.7	4.72	3.73	16.88	9.51	16.8	6.25
Merged-chr4-40142415-2	chr4	40141915	40142915	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007386)	promoter-TSS (NM_007386)	-850.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	135.58	208.74	148.92	170.7	269.64	155.13	203.84	215.78	111.79
Merged-chr9-96438761-1	chr9	96438261	96439261	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39914.0	NM_011279	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	27.46	21.66	12.02	40.48	23.33	30.54	22.18	30.07	9.99
Merged-chr7-29489010-2	chr7	29488509	29489509	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081028, intron 2 of 22)	Charlie2a|DNA|hAT-Charlie	16451.0	NM_001081028	74206.0	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	9.15	1.84	0.0	6.75	1.4	2.41	4.22	0.44	5.0
Merged-chr16-4199393-1	chr16	4198893	4199893	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	14011.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	53.77	50.23	37.0	58.7	51.32	28.13	65.48	91.53	27.48
Merged-chr14-106500858-1	chr14	106500358	106501358	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14338.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	1.72	2.76	3.7	0.67	3.27	0.0	2.11	3.1	7.49
Merged-chr18-65013681-1	chr18	65013181	65014181	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-9846.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.86	2.3	1.85	2.7	3.73	3.22	2.11	1.77	2.5
Merged-chr19-10303360-1	chr19	10302860	10303860	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	1517.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	17.73	9.68	7.4	12.82	8.4	14.47	4.22	2.21	2.5
Merged-chr8-128458233-1	chr8	128457733	128458733	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358959, intron 7 of 16)	intron (NM_001358959, intron 7 of 16)	98992.0	NR_035436	100316680.0		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	16.59	22.58	34.22	24.96	25.66	24.92	22.18	11.05	18.11
Merged-chr19-55812408-1	chr19	55811908	55812908	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	70598.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	7.44	13.82	18.5	14.17	7.46	7.23	21.12	8.4	14.99
Merged-chr9-94236854-1	chr9	94236354	94237354	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	301227.0	NM_001033145	68861.0	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	7.44	4.15	1.85	4.72	3.73	8.04	3.17	3.98	0.0
Merged-chr13-54622523-1	chr13	54622023	54623023	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178397, intron 1 of 10)	intron (NM_178397, intron 1 of 10)	739.0	NM_178397	76577.0	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	147.02	158.97	99.89	111.33	129.22	89.22	152.09	138.4	71.2
Merged-chr4-46411705-2	chr4	46411203	46412203	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7520.0	NM_053149	93966.0	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	7.44	5.07	1.85	3.37	4.67	4.82	3.17	3.98	5.0
Merged-chr2-31141085-1	chr2	31140585	31141585	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	CpG	923.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	56.63	50.23	23.12	71.52	42.92	28.13	70.76	47.31	34.35
Merged-chr11-107466594-1	chr11	107466094	107467094	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	4126.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	49.2	48.38	57.35	62.07	38.25	49.83	85.55	61.02	43.72
Merged-chr2-14231149-1	chr2	14230649	14231649	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	1735.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	145.87	190.76	86.95	165.98	178.21	123.78	212.29	243.63	78.07
Merged-chr8-14883683-1	chr8	14883183	14884183	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4853.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.57	0.46	0.0	3.37	2.33	1.61	17.96	11.5	8.12
Merged-chr10-93909190-2	chr10	93908702	93909702	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18000.0	NM_019648	56307.0	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	1.14	1.38	0.0	0.0	1.87	0.0	4.22	1.77	1.25
Merged-chr3-133549599-1	chr3	133549099	133550099	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5209.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	30.89	31.33	28.67	37.11	24.26	28.94	33.8	41.12	24.98
Merged-chr9-85401983-1	chr9	85401483	85402483	+	662.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74833.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	9.72	7.83	7.4	9.45	3.27	7.23	31.69	21.67	5.62
Merged-chr17-27000286-2	chr17	26999790	27000790	+	662.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17745.0	NM_001251881	70772.0	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	24.03	19.35	30.52	22.94	29.86	19.29	20.07	24.76	21.23
Merged-chr4-116077332-1	chr4	116076832	116077832	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153521, intron 1 of 9)	intron (NM_153521, intron 1 of 9)	2063.0	NM_153521	230654.0	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	54.92	51.15	42.55	49.25	39.65	56.27	59.15	45.1	39.35
Merged-chr10-116996373-1	chr10	116995873	116996873	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007583, intron 4 of 9)	intron (NM_001007583, intron 4 of 9)	10059.0	NM_001007583	382427.0	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	1.14	1.84	0.0	2.02	3.27	3.22	2.11	4.42	2.5
Merged-chrX-169034569-1	chrX	169034069	169035069	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	intron (NM_009707, intron 1 of 12)	-2042.0	NM_178754	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	4.58	3.23	1.85	4.05	4.2	4.82	1.06	3.1	2.5
Merged-chr18-53914383-1	chr18	53913883	53914883	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 4 of 12)	intron (NM_152809, intron 4 of 12)	52270.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	9.15	5.07	5.55	7.42	12.6	19.29	7.39	5.31	0.62
Merged-chr16-43802230-1	chr16	43801730	43802730	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007877, intron 2 of 6)	intron (NM_007877, intron 2 of 6)	40009.0	NM_007877	13490.0	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	5.15	0.46	3.7	5.4	2.33	0.0	1.06	1.77	2.5
Merged-chr3-98157209-1	chr3	98156709	98157709	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_027665	71078.0	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	4.0	3.23	1.85	3.37	1.87	6.43	6.34	7.07	2.5
Merged-chr14-106439488-1	chr14	106438988	106439988	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045938, intron 2 of 3)	intron (NR_045938, intron 2 of 3)	47032.0	NR_045938	73631.0	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	5.72	1.84	0.0	4.72	2.33	1.61	1.06	0.44	1.87
Merged-chr13-56421400-1	chr13	56420900	56421900	+	662.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-16955.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	4.58	3.69	5.55	4.72	1.87	1.61	2.11	3.98	0.0
Merged-chr7-116444454-3	chr7	116444003	116445003	+	661.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1045.0	NM_011083	18704.0	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	65.21	59.44	43.47	66.8	58.78	90.83	53.87	63.23	56.21
Merged-chr1-165683529-2	chr1	165683028	165684028	+	661.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	B3A|SINE|B2	24566.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	36.61	36.4	33.3	43.86	35.45	32.15	34.85	35.82	26.23
Merged-chr12-110508116-3	chr12	110507623	110508623	+	661.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	MIRb|SINE|MIR	22384.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	15.45	16.59	14.8	21.59	20.99	13.66	14.79	12.82	12.49
Merged-chr16-35767787-2	chr16	35767285	35768285	+	661.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	MLT1A0|LTR|ERVL-MaLR	1571.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	56.63	51.61	17.57	66.8	44.32	40.19	51.75	42.01	18.11
Merged-chr6-49262685-2	chr6	49262188	49263188	+	661.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362188, intron 1 of 8)	intron (NM_001362188, intron 1 of 8)	1364.0	NM_001347209	101214.0	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha	protein-coding	127.0	164.04	75.85	103.91	118.03	75.56	107.73	137.07	70.57
Merged-chr11-69092925-2	chr11	69092416	69093416	+	661.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009497)	TTS (NM_009497)	4388.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	28.03	22.12	21.27	19.57	14.0	18.49	28.52	28.3	18.11
Merged-chr2-157798500-3	chr2	157797982	157798982	+	661.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025680, intron 4 of 15)	intron (NM_025680, intron 4 of 15)	61081.0	NM_025680	66642.0	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	12.01	12.9	5.55	6.75	7.93	8.04	5.28	13.27	6.25
Merged-chr7-132858369-2	chr7	132857873	132858873	+	661.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198017)	promoter-TSS (NM_198017)	-852.0	NM_198017	109359.0	Mm.274824	NM_198017	ENSMUSG00000030965	Abraxas2	AA589499|AI853413|Abro1|C430003P19Rik|Fam175b	BRISC complex subunit	protein-coding	17.73	21.66	17.57	20.24	15.86	32.96	20.07	18.57	21.23
Merged-chr16-59421060-2	chr16	59420557	59421557	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081190, intron 2 of 8)	intron (NM_001081190, intron 2 of 8)	13675.0	NM_001081190	328699.0	Mm.451970	NM_001081190	ENSMUSG00000074991	Gabrr3	-	gamma-aminobutyric acid (GABA) receptor, rho 3	protein-coding	0.0	3.69	0.92	5.4	0.0	5.63	6.34	2.21	1.25
Merged-chr14-72691559-2	chr14	72691059	72692059	+	661.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 1 of 25)	MLT1A|LTR|ERVL-MaLR	18444.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.15	4.61	0.0	4.05	7.93	4.82	6.34	3.98	2.5
Merged-chr13-40977799-2	chr13	40977280	40978280	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23230.0	NM_026550	68083.0	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	9.72	5.99	1.85	6.07	2.33	0.0	2.11	5.31	1.25
Merged-chr8-70625263-2	chr8	70624770	70625770	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVK26-int|LTR|ERVK	6825.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	28.6	17.05	31.45	29.01	17.73	27.33	9.51	20.34	14.36
Merged-chr6-17615975-2	chr6	17615491	17616491	+	661.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21019.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	12.59	20.74	29.6	10.8	20.53	11.25	17.96	13.27	21.23
Merged-chr1-184908797-1	chr1	184908297	184909297	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145515, intron 13 of 17)	intron (NM_145515, intron 13 of 17)	-25761.0	NM_178692	226777.0	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	7.44	7.83	16.65	10.12	7.46	9.65	7.39	7.96	10.62
Merged-chr7-38002279-1	chr7	38001779	38002779	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011274, intron 1 of 10)	intron (NM_011274, intron 1 of 10)	17273.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	18.88	25.8	27.75	16.19	20.53	18.49	14.79	7.07	12.49
Merged-chr2-167227642-1	chr2	167227142	167228142	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008968, intron 1 of 9)	intron (NM_008968, intron 1 of 9)	12895.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	12.01	9.22	16.65	7.42	7.93	12.86	12.67	7.96	9.99
Merged-chr16-49164519-1	chr16	49164019	49165019	+	661.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166210, intron 32 of 40)	intron (NM_001166210, intron 32 of 40)	107033.0	NM_001166210	667772.0	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	4.0	2.76	1.85	4.72	2.8	2.41	3.17	3.98	1.87
Merged-chr19-30032412-2	chr19	30031907	30032907	+	661.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144873, intron 1 of 15)	intron (NM_144873, intron 1 of 15)	1894.0	NM_144873	109113.0	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	46.34	77.41	55.5	59.38	51.78	43.4	79.21	76.49	41.84
Merged-chr6-145245419-2	chr6	145244923	145245923	+	661.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021284, intron 2 of 4)	intron (NM_021284, intron 2 of 4)	4808.0	NM_021284	16653.0	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	58.92	87.09	47.17	56.68	33.12	45.01	77.1	90.64	44.97
Merged-chr5-124476625-3	chr5	124476146	124477146	+	661.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030259, intron 1 of 3)	intron (NM_030259, intron 1 of 3)	1589.0	NM_030259	80291.0	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	178.48	105.06	119.32	134.27	51.32	63.5	156.32	122.48	86.18
Merged-chr10-98917218-3	chr10	98916816	98917816	+	661.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	2164.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	42.9	59.9	20.35	49.25	45.25	24.11	46.47	53.06	31.23
Merged-chr7-92742106-1	chr7	92741606	92742606	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015510)	promoter-TSS (NR_015510)	392.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	24.03	14.28	5.55	19.57	11.66	9.65	22.18	17.69	11.24
Merged-chr5-67764973-1	chr5	67764473	67765473	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009727, exon 12 of 36)	exon (NM_009727, exon 12 of 36)	82458.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	6.86	7.37	9.25	4.72	0.93	4.02	5.28	3.1	5.0
Merged-chr16-92944057-2	chr16	92943561	92944561	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117987.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	9.15	2.3	9.25	2.7	7.93	3.22	12.67	9.73	5.0
Merged-chr15-8206431-2	chr15	8205920	8206920	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162906, intron 21 of 52)	L1_Mus2|LINE|L1	37314.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	14.3	14.28	39.77	16.87	16.33	16.08	16.9	19.9	11.24
Merged-chr11-106305580-2	chr11	106305083	106306083	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3687.0	NM_008117	14599.0	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	30.32	18.89	33.3	37.78	21.93	27.33	46.47	22.55	21.23
Merged-chr6-71196274-2	chr6	71195775	71196775	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3604.0	NM_017399	14080.0	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	6.86	7.83	7.4	8.1	3.27	8.04	10.56	1.33	5.0
Merged-chr5-33721825-2	chr5	33721395	33722395	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163217)	promoter-TSS (NM_001163217)	171.0	NM_001163215	14184.0	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	5.15	1.84	3.7	5.4	0.93	5.63	5.28	0.88	1.25
Merged-chr12-111524998-1	chr12	111524498	111525498	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13103.0	NM_178041	217869.0	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	2.29	2.3	7.4	6.07	3.27	0.0	3.17	1.77	3.75
Merged-chr2-164706222-2	chr2	164705728	164706728	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7727.0	NM_030058	78239.0	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	12.01	10.6	7.4	12.82	12.13	12.86	22.18	15.48	14.99
Merged-chr16-92435073-1	chr16	92434573	92435573	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	31096.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	12.59	12.44	1.85	18.89	14.0	28.94	11.62	18.13	24.36
Merged-chr11-59778693-2	chr11	59778198	59779198	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_012027, exon 24 of 24)	3' UTR (NM_012027, exon 24 of 24)	8524.0	NR_110894	194908.0	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	1.14	2.76	1.85	2.02	0.93	2.41	2.11	0.44	0.0
Merged-chr4-8712435-3	chr4	8711961	8712961	+	661.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	(TG)n|Simple_repeat|Simple_repeat	22055.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.86	3.69	7.4	4.72	4.2	12.86	16.9	7.52	8.74
Merged-chr15-97140224-2	chr15	97139734	97140734	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	27010.0	NR_155278	102635594.0	Mm.392594	NR_155278	ENSMUSG00000116295	Gm32885	-	predicted gene, 32885	ncRNA	2.86	3.69	9.25	7.42	1.87	0.8	5.28	5.31	2.5
Merged-chr16-15914426-1	chr16	15913926	15914926	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 11 of 18)	intron (NM_001355731, intron 11 of 18)	27140.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	5.72	13.36	18.5	8.77	3.27	8.04	10.56	7.07	16.24
Merged-chr9-44182477-2	chr9	44181971	44182971	+	661.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007619, intron 2 of 15)	B3|SINE|B2	47813.0	NM_001359530	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	21.17	15.21	25.9	14.17	8.86	24.92	16.9	12.82	11.24
Merged-chr7-34195827-3	chr7	34195304	34196304	+	661.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026549, intron 3 of 6)	B2_Mm2|SINE|B2	866.0	NM_026549	68079.0	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	53.2	53.91	57.35	48.58	47.12	56.27	51.75	44.22	31.85
Merged-chr13-42074613-3	chr13	42074148	42075148	+	661.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007772, intron 2 of 8)	intron (NM_007772, intron 2 of 8)	22627.0	NM_007772	110521.0	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	21.74	15.67	22.2	18.89	12.6	18.49	20.07	22.11	7.49
Merged-chr12-41487232-2	chr12	41486733	41487733	+	661.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-1176.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	5.15	5.53	1.85	2.7	5.6	3.22	1.06	6.19	0.62
Merged-chr18-82843746-3	chr18	82843261	82844261	+	661.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-12136.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	9.15	3.69	5.55	5.4	3.73	8.04	6.34	5.31	7.49
Merged-chr4-48380784-2	chr4	48380293	48381293	+	661.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281978, intron 4 of 18)	intron (NM_001281978, intron 4 of 18)	92670.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	5.72	4.15	7.4	6.07	8.4	1.61	2.11	7.52	11.24
Merged-chr4-45418498-2	chr4	45418005	45419005	+	661.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9739.0	NM_001009949	230125.0	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	4.0	0.0	3.7	2.7	1.87	0.0	3.17	3.1	1.25
Merged-chr8-127837029-1	chr8	127836529	127837529	+	661.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	441196.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.29	4.15	3.7	10.12	4.67	0.0	10.56	6.63	3.75
Merged-chr3-89449694-3	chr3	89449156	89450156	+	661.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-4885.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.29	1.38	9.25	5.4	1.87	4.82	0.0	0.0	3.12
Merged-chr18-5163235-3	chr18	5162837	5163837	+	661.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2394.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	9.72	5.07	3.7	21.59	24.72	18.49	10.56	4.86	3.75
Merged-chr5-88559332-1	chr5	88558832	88559832	+	661.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4870.0	NM_023054	65961.0	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl-1|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	20.59	27.65	37.0	12.82	16.79	18.49	19.01	18.13	23.73
Merged-chr4-11005188-2	chr4	11004681	11005681	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	2438.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	14.87	16.13	12.95	17.54	5.6	14.47	15.84	17.24	14.99
Merged-chr5-115274036-1	chr5	115273536	115274536	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_001302449	50849.0	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	12.01	14.75	14.8	16.87	11.66	20.09	11.62	22.55	11.87
Merged-chr16-77443533-2	chr16	77443033	77444033	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015543, intron 2 of 4)	intron (NR_015543, intron 2 of 4)	114205.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	5.72	4.15	9.25	1.35	6.06	0.0	3.17	9.73	8.12
Merged-chr6-125069567-2	chr6	125069070	125070070	+	661.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163269, intron 1 of 1)	intron (NM_001163269, intron 1 of 1)	1650.0	NM_001163269	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	9.72	5.07	8.32	5.4	6.53	12.86	4.22	6.19	2.5
Merged-chr14-30877040-2	chr14	30876518	30877518	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_028839, exon 8 of 8)	3' UTR (NM_028839, exon 8 of 8)	-2239.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	40.04	37.78	40.7	47.23	45.25	43.4	21.12	30.51	11.87
Merged-chr1-191333585-2	chr1	191333070	191334070	+	661.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025864, intron 2 of 7)	intron (NM_025864, intron 2 of 7)	7605.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	60.07	41.01	24.05	48.58	27.06	26.53	27.46	44.66	31.23
Merged-chr9-78006837-3	chr9	78006361	78007361	+	661.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45097.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	2.29	3.23	0.0	4.05	1.87	4.82	4.22	4.42	2.5
Merged-chr8-108868076-3	chr8	108867607	108868607	+	661.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-68753.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	13.16	6.45	11.1	3.37	6.06	12.06	9.51	8.84	9.99
Merged-chr10-75436852-3	chr10	75436394	75437394	+	661.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133995, exon 8 of 10)	exon (NM_133995, exon 8 of 10)	-12616.0	NR_045841	71125.0	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	4.58	1.84	0.92	4.05	0.93	1.61	2.11	2.21	2.5
Merged-chr7-27725894-2	chr7	27725421	27726421	+	661.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1F|LTR|ERVL-MaLR	-5488.0	NM_029531	22718.0	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	5.15	6.91	7.4	11.47	3.73	14.47	17.96	4.42	2.5
Merged-chr2-122149551-2	chr2	122149073	122150073	+	661.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	RSINE1|SINE|B4	1886.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	102.97	85.25	60.12	70.17	66.71	45.82	137.3	140.61	69.32
Merged-chr1-125371010-1	chr1	125370510	125371510	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64717.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	3.43	0.92	3.7	4.05	7.46	6.43	3.17	0.44	0.0
Merged-chr13-112473867-2	chr13	112473380	112474380	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010560, intron 2 of 16)	intron (NM_010560, intron 2 of 16)	9810.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	13.73	13.82	13.87	12.14	7.93	21.7	10.56	12.82	5.0
Merged-chr8-11004924-1	chr8	11004424	11005424	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2926.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	6.29	2.3	3.7	2.7	0.93	4.82	2.11	2.65	3.75
Merged-chr2-155249757-1	chr2	155249257	155250257	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_111890, intron 3 of 3)	intron (NR_111890, intron 3 of 3)	13149.0	NM_001291108	67068.0	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	5.15	4.61	5.55	6.75	6.53	5.63	5.28	1.77	0.0
Merged-chr6-53496374-1	chr6	53495874	53496874	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 5 of 10)	intron (NM_001327821, intron 5 of 10)	-77000.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	6.29	1.38	7.4	4.05	2.33	13.66	4.22	0.44	6.87
Merged-chr11-93820925-2	chr11	93820431	93821431	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64835.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.86	1.84	1.85	21.59	20.06	29.74	14.79	11.94	11.24
Merged-chr9-13492997-1	chr9	13492497	13493497	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61636.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	5.72	5.53	10.17	8.1	2.8	5.63	0.0	2.21	4.37
Merged-chr17-29497593-1	chr17	29497093	29498093	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	6548.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	24.03	18.89	12.95	11.47	9.33	18.49	13.73	13.27	20.61
Merged-chr10-40192702-1	chr10	40192202	40193202	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50448.0	NM_001114332	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	2.86	1.38	1.85	4.72	2.33	1.61	3.17	3.1	3.75
Merged-chr8-46756050-3	chr8	46755542	46756542	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	A-rich|Low_complexity|Low_complexity	16297.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	23.45	18.89	38.85	12.82	20.99	20.09	28.52	24.32	17.49
Merged-chr8-110971521-1	chr8	110971021	110972021	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009179, exon 7 of 7)	3' UTR (NM_009179, exon 7 of 7)	26302.0	NM_007916	13680.0	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	2.29	7.37	9.25	14.84	10.26	17.68	6.34	5.31	4.37
Merged-chr19-11928336-1	chr19	11927836	11928836	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172635, intron 9 of 18)	B2_Mm2|SINE|B2	4608.0	NR_105960	102465601.0		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	2.29	5.53	1.85	4.05	5.13	9.65	11.62	7.07	8.12
Merged-chr2-160369174-1	chr2	160368674	160369674	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2109.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	19.45	19.35	20.35	26.31	22.39	20.9	31.69	29.63	24.36
Merged-chr2-78868016-1	chr2	78867516	78868516	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1031.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	22.31	17.97	5.55	29.01	20.53	14.47	19.01	11.94	11.24
Merged-chr11-22851535-1	chr11	22851035	22852035	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001169114, intron 1 of 1)	intron (NM_001169114, intron 1 of 1)	8200.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	18.31	13.82	21.27	6.75	14.46	21.7	27.46	22.55	10.62
Merged-chr4-114665866-1	chr4	114665366	114666366	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-155854.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	4.58	4.61	0.92	1.35	2.8	1.61	1.06	2.21	7.49
Merged-chr4-9144349-1	chr4	9143849	9144849	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124944.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.86	1.84	0.0	3.37	3.73	1.61	3.17	1.33	6.25
Merged-chr10-43829158-1	chr10	43828658	43829658	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	3251.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	1.14	3.23	0.0	26.31	25.66	34.56	0.0	1.33	1.87
Merged-chr3-132086043-1	chr3	132085543	132086543	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020265, exon 1 of 4)	exon (NM_020265, exon 1 of 4)	751.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	1.72	3.23	0.0	1.35	1.4	3.22	0.0	3.98	2.5
Merged-chr8-110193269-1	chr8	110192769	110193769	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-24691.0	NM_146215	234728.0	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.57	0.92	1.85	0.67	0.93	0.0	5.28	0.88	1.25
Merged-chr11-102138552-2	chr11	102138048	102139048	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6965.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	5.15	3.69	3.7	7.42	1.4	7.23	9.51	8.84	0.0
Merged-chr2-155033620-1	chr2	155033120	155034120	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015770, intron 1 of 3)	intron (NM_015770, intron 1 of 3)	20050.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	3.43	1.38	1.85	7.42	10.26	6.43	3.17	1.77	2.5
Merged-chr15-39199177-1	chr15	39198677	39199677	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256383, intron 1 of 25)	intron (NM_001256383, intron 1 of 25)	891.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	4.0	0.46	3.7	3.37	2.33	3.22	1.06	0.44	1.25
Merged-chr2-69586207-1	chr2	69585707	69586707	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081088)	promoter-TSS (NM_001081088)	-140.0	NM_001081088	14725.0	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	1.14	1.84	12.95	1.35	2.33	5.63	0.0	0.0	0.0
Merged-chr10-121533472-1	chr10	121532972	121533972	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53322.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	6.86	1.84	0.92	2.7	2.33	2.41	2.11	3.54	0.0
Merged-chr11-82834671-1	chr11	82834171	82835171	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164570, intron 1 of 7)	B2_Mm1t|SINE|B2	-5628.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	11.44	14.28	14.8	17.54	7.93	7.23	23.24	12.38	17.49
Merged-chr15-99473788-1	chr15	99473288	99474288	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	942.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	18.88	29.95	7.4	17.54	11.66	13.66	31.69	20.78	11.87
Merged-chr13-69559958-1	chr13	69559458	69560458	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26094.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	16.59	9.68	7.4	16.19	13.06	6.43	4.22	0.88	1.25
Merged-chr17-10314628-1	chr17	10314128	10315128	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4733.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	17.73	41.47	18.5	43.86	45.72	36.97	40.14	31.84	28.73
Merged-chr1-39736457-1	chr1	39735957	39736957	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15468.0	NM_001145660	619289.0	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	25.74	23.04	23.12	28.34	26.12	18.49	17.96	10.61	21.86
Merged-chr7-96999107-3	chr7	96998608	96999608	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	L1Md_F2|LINE|L1	47581.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	10.3	7.83	13.87	9.45	6.53	9.65	5.28	3.1	8.74
Merged-chr19-12430633-1	chr19	12430133	12431133	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019540, exon 2 of 2)	3' UTR (NM_019540, exon 2 of 2)	2728.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	5.72	3.23	0.0	3.37	3.73	3.22	2.11	7.07	6.87
Merged-chr6-116004180-1	chr6	116003680	116004680	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9175.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	131.0	119.34	104.52	103.23	67.18	110.92	108.79	127.79	56.83
Merged-chr1-161053324-1	chr1	161052824	161053824	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172644, intron 10 of 16)	intron (NM_172644, intron 10 of 16)	15232.0	NR_028543	100217446.0		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	5.15	10.6	13.87	14.17	14.46	20.9	5.28	9.73	8.74
Merged-chr7-83586269-2	chr7	83585770	83586770	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177695, intron 1 of 22)	intron (NM_177695, intron 1 of 22)	1339.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	4.58	5.99	1.85	4.72	0.93	1.61	11.62	5.31	5.62
Merged-chr6-42295902-1	chr6	42295402	42296402	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013491, intron 7 of 22)	intron (NM_013491, intron 7 of 22)	9217.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	8.58	5.53	7.4	6.75	8.4	4.82	5.28	3.54	2.5
Merged-chr11-119084621-2	chr11	119084135	119085135	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007625, intron 2 of 4)	intron (NM_007625, intron 2 of 4)	1602.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	109.26	71.42	51.8	89.06	57.85	64.3	76.05	76.05	33.72
Merged-chr18-61911859-1	chr18	61911359	61912359	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360868)	promoter-TSS (NM_001360868)	-7.0	NM_001164491	319713.0	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	1.72	1.38	0.0	4.72	0.93	0.0	3.17	2.65	2.5
Merged-chr14-40914936-1	chr14	40914436	40915436	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 5 of 8)	intron (NM_145928, intron 5 of 8)	-21971.0	NM_177816	328381.0	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	6.86	3.23	5.55	4.72	1.4	8.04	3.17	3.1	6.87
Merged-chr10-87740716-1	chr10	87740216	87741216	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117549.0	NM_001314010	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.29	4.15	0.92	8.77	6.53	9.65	9.51	3.1	1.87
Merged-chr13-45006661-1	chr13	45006161	45007161	+	661.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4565.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	31.46	35.48	16.65	51.95	55.05	35.37	23.24	26.53	14.36
Merged-chr2-166108527-1	chr2	166108027	166109027	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	46758.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	1.72	0.92	11.1	2.02	0.93	4.82	3.17	2.65	1.87
Merged-chr7-45731245-1	chr7	45730745	45731745	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_017465, exon 6 of 7)	exon (NM_017465, exon 6 of 7)	-5429.0	NM_027055	69363.0	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	4.58	3.23	6.47	2.02	2.8	0.8	3.17	1.33	3.75
Merged-chr14-78731417-1	chr14	78730917	78731917	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081336, intron 1 of 29)	intron (NM_001081336, intron 1 of 29)	1312.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	5.15	6.45	5.55	9.45	4.67	6.43	3.17	0.0	7.49
Merged-chr5-33434353-1	chr5	33433853	33434853	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011320)	promoter-TSS (NM_011320)	-263.0	NM_011320	672284.0		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 homeobox 1	protein-coding	1.72	0.0	1.85	3.37	0.0	0.8	2.11	0.44	5.0
Merged-chr2-160617394-1	chr2	160616894	160617894	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28503.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	30.89	29.03	23.12	22.94	27.06	35.37	25.35	24.32	19.36
Merged-chr9-116140628-1	chr9	116140128	116141128	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	34735.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	64.64	79.25	75.85	78.27	95.63	74.75	36.97	40.68	21.23
Merged-chr16-38632227-1	chr16	38631727	38632727	+	661.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 3 of 11)	B3|SINE|B2	69413.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	3.43	3.23	0.0	4.72	3.73	1.61	7.39	2.21	3.12
Merged-chr10-75037141-1	chr10	75036641	75037641	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359271)	promoter-TSS (NM_001359271)	83.0	NM_001359271	76877.0	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	2.29	3.69	3.7	4.05	3.73	0.0	2.11	1.77	0.62
Merged-chr4-153514202-1	chr4	153513702	153514702	+	661.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31372.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	1.14	2.76	5.55	1.35	5.13	3.22	3.17	0.0	5.62
Merged-chr4-20008309-4	chr4	20007797	20008797	+	660.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001317723)	promoter-TSS (NM_001317723)	-32.0	NM_015767	50500.0	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	6.86	7.37	3.7	8.1	2.8	8.04	2.11	2.21	2.5
Merged-chr4-33239968-2	chr4	33239424	33240424	+	660.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8863.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	30.32	16.59	54.57	22.27	11.2	9.65	38.02	13.71	26.85
Merged-chr1-55473949-2	chr1	55473457	55474457	+	660.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	ORR1E|LTR|ERVL-MaLR	68011.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	6.86	5.07	1.85	11.47	6.06	8.04	4.22	4.86	11.24
Merged-chr9-104272340-3	chr9	104271831	104272831	+	660.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9401.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	39.47	43.77	52.72	57.35	48.52	80.38	54.92	49.08	48.09
Merged-chr9-37531002-3	chr9	37530503	37531503	+	660.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136939, intron 1 of 6)	intron (NR_136939, intron 1 of 6)	2914.0	NM_027102	69524.0	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	4.58	2.3	6.47	5.4	1.4	1.61	1.06	1.77	1.25
Merged-chr17-86170495-3	chr17	86169938	86170938	+	660.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	2653.0	NM_011104	18754.0	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	10.87	5.07	9.25	5.4	3.27	1.61	4.22	2.21	3.75
Merged-chr4-123940028-1	chr4	123939528	123940528	+	660.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22595.0	NM_017475	54170.0	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	7.44	4.61	7.4	4.72	4.2	5.63	8.45	1.77	8.74
Merged-chr15-32766455-2	chr15	32765945	32766945	+	660.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155440, intron 1 of 1)	intron (NR_155440, intron 1 of 1)	6707.0	NR_155440	105245909.0	Mm.229263	NR_155440	ENSMUSG00000115749	Gm41289	-	predicted gene, 41289	ncRNA	1.72	3.23	1.85	4.72	0.93	0.0	1.06	1.77	0.0
Merged-chr8-46951886-4	chr8	46951462	46952462	+	660.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34925.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	56.06	51.15	35.15	50.6	37.79	46.62	67.6	61.9	30.6
Merged-chr8-81010534-1	chr8	81010034	81011034	+	660.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027554, intron 2 of 9)	Tigger5|DNA|TcMar-Tigger	4372.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	4.58	5.07	0.0	5.4	7.0	0.0	12.67	11.5	9.37
Merged-chr11-79529814-3	chr11	79529352	79530352	+	660.733337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033711, intron 1 of 1)	intron (NM_001033711, intron 1 of 1)	757.0	NM_146023	101488212.0	Mm.439665	NM_146023	ENSMUSG00000070354	Evi2	Evi2a-evi2b|Gm21975	ecotropic viral integration site 2	protein-coding	255.14	352.5	156.32	219.28	224.39	154.33	230.25	349.75	168.0
Merged-chr11-86692106-3	chr11	86691621	86692621	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175004, exon 3 of 3)	3' UTR (NM_175004, exon 3 of 3)	8040.0	NM_001098810	217057.0	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	22.31	17.05	6.47	16.19	12.13	24.92	13.73	13.27	8.12
Merged-chr15-75886157-2	chr15	75885660	75886660	+	660.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282443, intron 7 of 13)	intron (NM_001282443, intron 7 of 13)	2563.0	NM_001282443	223645.0		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	9.15	8.75	19.42	12.82	7.46	3.22	8.45	4.42	4.37
Merged-chrX-12260918-3	chrX	12260421	12261421	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER3|DNA|hAT-Charlie	94075.0	NR_045321	100043946.0	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	-	predicted gene 14635	ncRNA	11.44	8.29	2.77	10.12	6.06	9.65	14.79	3.1	3.75
Merged-chr1-183298200-3	chr1	183297700	183298700	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027861)	promoter-TSS (NM_027861)	-907.0	NR_151660	71678.0	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	20.59	21.66	40.7	29.01	17.26	23.31	22.18	21.22	16.86
Merged-chr17-29493735-1	chr17	29493235	29494235	+	660.666687	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008842, exon 5 of 6)	exon (NM_008842, exon 5 of 6)	2690.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	50.91	35.48	37.92	16.87	9.8	10.45	26.4	15.03	13.12
Merged-chr16-36061391-1	chr16	36060891	36061891	+	660.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	10124.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	4.58	7.83	9.25	11.47	5.13	4.82	7.39	4.42	5.0
Merged-chr16-13447871-2	chr16	13447345	13448345	+	660.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1678.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	8.01	0.0	1.85	2.7	2.8	1.61	5.28	1.77	8.12
Merged-chr10-95500854-3	chr10	95500361	95501361	+	660.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359476, intron 1 of 5)	intron (NM_001359476, intron 1 of 5)	1088.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	88.1	107.36	92.5	93.11	89.1	65.91	127.8	142.38	67.45
Merged-chr9-59723275-3	chr9	59722758	59723758	+	660.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15494.0	NM_001033498	546134.0	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	22.88	13.82	8.32	12.82	4.67	9.65	9.51	12.38	9.99
Merged-chrX-103980227-3	chrX	103979742	103980742	+	660.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358205, intron 1 of 4)	intron (NM_001358205, intron 1 of 4)	1043.0	NM_001358205	19820.0	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	96.68	133.63	85.1	101.88	103.1	68.32	87.66	115.41	73.07
Merged-chr6-134828614-2	chr6	134828160	134829160	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1539.0	NM_177687	232430.0	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	14.87	11.06	9.25	12.82	11.2	7.23	19.01	13.27	18.11
Merged-chr12-40471631-3	chr12	40471107	40472107	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	25554.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	23.45	22.12	33.3	32.39	15.39	5.63	16.9	22.55	6.87
Merged-chr5-140828774-1	chr5	140828274	140829274	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	1657.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	48.05	56.68	19.42	44.53	59.71	49.83	29.57	30.51	23.11
Merged-chr19-46600580-2	chr19	46600076	46601076	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146099, intron 1 of 3)	L1MB5|LINE|L1	1470.0	NM_146099	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	20.59	16.59	29.6	13.49	13.06	24.92	29.57	18.57	10.62
Merged-chr5-88727939-2	chr5	88727459	88728459	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026735, intron 1 of 5)	L1MC4|LINE|L1	7088.0	NM_026735	68473.0	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	17.73	20.27	26.82	8.77	10.26	6.43	43.3	24.32	13.12
Merged-chr15-79346561-1	chr15	79346061	79347061	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001304830)	promoter-TSS (NM_001304830)	-60.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	21.74	14.28	17.57	30.36	12.6	4.82	10.56	10.17	14.36
Merged-chr5-65577025-1	chr5	65576525	65577525	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016786, intron 3 of 6)	intron (NM_016786, intron 3 of 6)	39780.0	NM_001310619	53323.0	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	10.3	19.35	9.25	11.47	3.73	9.65	19.01	15.48	3.75
Merged-chr10-17676612-2	chr10	17676108	17677108	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46620.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	16.59	18.43	31.45	14.84	14.46	8.84	15.84	17.69	11.87
Merged-chr16-44692062-1	chr16	44691562	44692562	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32239.0	NM_145972	212547.0	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	6.29	1.84	0.92	0.67	0.93	3.22	3.17	0.88	2.5
Merged-chr3-51234628-3	chr3	51234113	51235113	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009834, intron 1 of 2)	intron (NM_009834, intron 1 of 2)	10166.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.72	2.3	3.7	0.67	2.33	1.61	0.0	2.21	5.0
Merged-chr2-83625418-2	chr2	83624912	83625912	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19166.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	8.01	3.69	0.92	2.02	4.67	3.22	2.11	3.54	2.5
Merged-chr12-116283150-2	chr12	116282648	116283648	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028731, intron 1 of 21)	intron (NM_028731, intron 1 of 21)	1926.0	NM_028731	52635.0	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	4.0	3.69	5.55	4.05	7.93	10.45	7.39	7.07	3.75
Merged-chr11-54995379-1	chr11	54994879	54995879	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138556, intron 14 of 24)	MIR3|SINE|MIR	-32439.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	13.73	6.45	18.5	11.47	13.06	14.47	21.12	15.92	10.62
Merged-chr13-59843024-3	chr13	59842508	59843508	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19861.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	8.58	6.91	0.92	4.05	7.93	4.02	8.45	9.73	5.0
Merged-chr12-35533440-2	chr12	35532932	35533932	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001314027, intron 1 of 9)	intron (NM_001314027, intron 1 of 9)	1557.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	20.59	28.11	8.32	23.62	31.72	20.9	29.57	20.34	18.74
Merged-chr14-72601797-3	chr14	72601424	72602424	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	108079.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	200.22	267.72	110.07	211.19	165.14	131.82	270.38	348.87	93.05
Merged-chr12-52605492-2	chr12	52604953	52605953	+	660.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3131.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	135.0	133.63	58.27	107.28	149.28	94.04	110.9	154.32	75.57
Merged-chr11-21240978-2	chr11	21240476	21241476	+	660.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290628, intron 1 of 22)	intron (NM_001290628, intron 1 of 22)	1944.0	NM_001290628	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	62.93	64.05	38.85	34.41	27.06	23.31	115.12	101.7	39.97
Merged-chr15-66969092-5	chr15	66968531	66969531	+	660.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008681, intron 1 of 15)	CpG	610.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	13.16	6.91	5.55	10.12	6.53	2.41	12.67	2.21	5.0
Merged-chr1-189807140-1	chr1	189806640	189807640	+	660.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008976, intron 3 of 18)	intron (NM_008976, intron 3 of 18)	78872.0	NM_008976	19250.0	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	2.29	2.3	1.85	1.35	0.93	0.0	14.79	6.63	6.25
Merged-chr8-122454630-3	chr8	122454128	122455128	+	660.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013914, exon 3 of 3)	3' UTR (NM_013914, exon 3 of 3)	-3306.0	NR_015497	319574.0	Mm.271989	NR_015497	ENSMUSG00000110656	Gm20735	-	predicted gene, 20735	ncRNA	5.72	1.84	1.85	5.4	0.93	3.22	1.06	0.44	1.25
Merged-chr5-144231557-2	chr5	144231073	144232073	+	660.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-7958.0	NM_001356993	70381.0	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	1.72	0.92	3.7	4.72	0.93	4.82	3.17	0.44	7.49
Merged-chr13-9188782-2	chr13	9188289	9189289	+	660.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87736.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	5.72	2.3	5.55	12.14	2.33	1.61	8.45	1.33	7.49
Merged-chr6-31088507-4	chr6	31087950	31088950	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25357.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	12.01	20.27	31.45	24.29	25.66	32.15	22.18	37.58	28.1
Merged-chr2-4401475-1	chr2	4400975	4401975	+	660.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001177843, exon 1 of 24)	5' UTR (NM_001177843, exon 1 of 24)	499.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	7.44	1.38	0.0	11.47	4.67	7.23	13.73	9.73	3.75
Merged-chr17-27650351-3	chr17	27649845	27650845	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5246.0	NM_011861	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	4.58	1.84	9.25	7.42	2.33	3.22	5.28	2.65	3.75
Merged-chr11-59224616-3	chr11	59224115	59225115	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	3547.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	29.75	38.71	35.15	33.74	24.72	40.99	49.64	45.1	26.23
Merged-chr2-91729662-1	chr2	91729162	91730162	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172669)	promoter-TSS (NM_172669)	-476.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	40.04	48.84	62.9	24.29	19.59	22.51	55.98	39.35	18.11
Merged-chr4-136887868-3	chr4	136887376	136888376	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	78.37	85.71	110.99	52.63	54.11	114.94	142.59	137.51	97.43
Merged-chr16-43335710-1	chr16	43335210	43336210	+	660.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	84486.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	23.45	21.2	12.02	35.76	21.93	28.13	16.9	19.46	14.36
Merged-chr2-30435947-3	chr2	30435399	30436399	+	660.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138748, intron 5 of 9)	(TG)n|Simple_repeat|Simple_repeat	19849.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	8.58	5.99	13.87	18.89	11.2	17.68	9.51	8.84	10.62
Merged-chr3-89349335-2	chr3	89348789	89349789	+	660.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029974)	TTS (NM_029974)	739.0	NM_001037722	11490.0	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	12.59	4.61	6.47	12.14	8.4	8.84	5.28	5.75	7.49
Merged-chr5-135674498-2	chr5	135673994	135674994	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14651.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	5.72	1.38	1.85	16.87	2.8	3.22	3.17	0.44	6.25
Merged-chr8-46923589-2	chr8	46923081	46924081	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-63306.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	20.02	8.29	18.5	7.42	2.33	16.08	10.56	15.03	11.24
Merged-chr8-24395015-2	chr8	24394509	24395509	+	660.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43937.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	3.43	3.23	4.62	2.7	3.27	1.61	5.28	1.77	1.87
Merged-chr2-25551343-3	chr2	25550833	25551833	+	660.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4393.0	NM_009422	22030.0	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	9.72	5.07	9.25	2.02	3.27	3.22	6.34	3.54	1.25
Merged-chr9-107634175-3	chr9	107633670	107634670	+	660.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	1172.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	77.23	74.65	72.15	57.35	54.58	86.01	98.23	60.13	87.43
Merged-chrX-10716454-3	chrX	10715952	10716952	+	660.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166635)	promoter-TSS (NM_001166635)	-913.0	NM_026524	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	46.34	51.15	45.32	64.77	43.85	52.25	100.34	114.52	69.32
Merged-chr17-5929175-3	chr17	5928629	5929629	+	660.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025664, intron 17 of 17)	B3|SINE|B2	-12151.0	NM_001113353	20975.0	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	12.01	12.44	27.75	14.84	14.0	14.47	12.67	11.05	16.86
Merged-chr5-24453028-3	chr5	24452510	24453510	+	660.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	833.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	56.63	64.05	61.05	58.03	60.65	97.26	57.03	59.69	31.23
Merged-chr7-30795133-2	chr7	30794625	30795625	+	660.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7220.0	NM_001033131	64661.0	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	1.72	0.46	0.0	2.7	0.0	1.61	2.11	2.21	4.37
Merged-chr10-99267757-2	chr10	99267249	99268249	+	660.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026268)	TTS (NM_026268)	4518.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	71.51	88.47	61.97	76.24	53.18	55.46	52.81	69.42	53.08
Merged-chr10-8869096-3	chr10	8868619	8869619	+	660.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	intron (NM_175155, intron 1 of 19)	16951.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	57.21	52.07	35.15	64.1	34.06	45.01	35.91	43.33	29.35
Merged-chr9-3030174-2	chr9	3029674	3030674	+	660.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	8569.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	12.01	64.05	10.17	13.49	58.78	12.06	28.52	21.67	2.5
Merged-chr11-17166852-2	chr11	17166349	17167349	+	660.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024459, intron 1 of 5)	intron (NM_024459, intron 1 of 5)	7551.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	18.88	18.43	17.57	20.24	15.86	9.65	12.67	13.27	8.74
Merged-chr7-45447743-3	chr7	45447232	45448232	+	660.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030678, intron 10 of 15)	intron (NM_030678, intron 10 of 15)	12154.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	10.3	11.98	7.4	7.42	11.2	3.22	10.56	10.61	8.74
Merged-chr8-123374914-1	chr8	123374414	123375414	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359076, intron 1 of 16)	intron (NM_001359076, intron 1 of 16)	1203.0	NM_001286363	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	84.09	71.88	56.42	58.03	27.52	47.42	70.76	53.94	59.95
Merged-chr2-103801268-1	chr2	103800768	103801768	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3628.0	NM_016739	53872.0	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	42.33	23.04	37.92	15.52	8.86	16.88	32.74	34.05	22.48
Merged-chr2-4591158-1	chr2	4590658	4591658	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177844, intron 5 of 11)	intron (NM_001177844, intron 5 of 11)	31404.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	18.31	16.13	18.5	10.12	9.33	23.31	22.18	23.88	24.36
Merged-chr2-155098830-1	chr2	155098330	155099330	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040634, exon 3 of 3)	non-coding (NR_040634, exon 3 of 3)	1249.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	9.15	4.15	9.25	4.05	4.2	12.06	9.51	9.73	12.49
Merged-chr2-44985147-1	chr2	44984647	44985647	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001355289, exon 11 of 11)	3' UTR (NM_001355289, exon 11 of 11)	38030.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	8.01	5.99	4.62	9.45	8.4	17.68	6.34	2.65	5.0
Merged-chr3-41741777-1	chr3	41741277	41742277	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291048)	promoter-TSS (NM_001291048)	737.0	NR_155540	67161.0	Mm.331001	NM_001081411	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik|CAGGS-SB10|Tg(ACTB-sb10)1Dla|Tg(CAG-sb10)1Dla	sodium channel and clathrin linker 1	protein-coding	77.23	76.95	49.95	75.57	51.78	57.87	82.38	63.23	38.1
Merged-chr2-52423330-2	chr2	52422824	52423824	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	1550.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	44.62	55.29	43.47	58.03	56.91	44.21	69.71	68.98	56.21
Merged-chr3-86141664-1	chr3	86141164	86142164	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_004418)	promoter-TSS (NR_004418)	-977.0	NR_004418	19871.0		NR_004418	ENSMUSG00000064390	Rnu73b	U73b	U73B small nuclear RNA	snRNA	88.67	99.07	37.92	72.87	71.38	61.09	138.36	84.9	32.48
Merged-chrX-10721519-1	chrX	10721019	10722019	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4154.0	NM_001166635	68041.0	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	4.58	7.83	7.4	2.7	3.73	4.82	11.62	7.07	10.62
Merged-chr5-135794681-2	chr5	135794201	135795201	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16052.0	NM_008617	17448.0	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	8.01	15.21	3.7	4.05	6.06	22.51	9.51	3.1	3.75
Merged-chr13-92702767-1	chr13	92702267	92703267	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172588, intron 9 of 11)	intron (NM_172588, intron 9 of 11)	91629.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	5.15	1.84	11.1	4.05	3.27	4.82	2.11	3.98	3.75
Merged-chr16-93835341-1	chr16	93834841	93835841	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	3220.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	17.16	10.6	21.27	16.19	6.06	14.47	47.53	19.46	21.86
Merged-chr19-10759740-2	chr19	10759229	10760229	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027805, intron 1 of 3)	L2a|LINE|L2	18782.0	NR_027805	403202.0	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	1.14	2.3	1.85	5.4	2.8	3.22	4.22	4.42	0.0
Merged-chr13-109212975-1	chr13	109212475	109213475	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-111769.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	2.29	1.84	4.62	2.02	0.93	3.22	0.0	0.88	1.25
Merged-chr19-29501703-1	chr19	29501203	29502203	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20284.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	58.35	58.06	45.32	72.87	94.23	75.56	84.49	103.02	60.58
Merged-chr12-111958225-1	chr12	111957725	111958725	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8784.0	NM_027360	70257.0	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	5.15	2.3	5.55	7.42	1.4	5.63	2.11	2.21	5.62
Merged-chr1-154062020-1	chr1	154061520	154062520	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-139167.0	NM_001204908	100503355.0	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	12.01	13.36	5.55	18.22	15.86	12.06	12.67	14.59	11.24
Merged-chr14-33231637-1	chr14	33231137	33232137	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	14814.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	14.3	14.75	2.77	22.94	23.79	34.56	3.17	3.54	8.74
Merged-chr3-132168669-1	chr3	132168169	132169169	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020265, intron 1 of 3)	intron (NM_020265, intron 1 of 3)	83377.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	15.45	7.37	10.17	8.77	9.33	17.68	3.17	5.31	7.49
Merged-chr2-73428589-1	chr2	73428089	73429089	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25300.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	7.44	4.15	10.17	3.37	2.8	9.65	3.17	3.1	1.25
Merged-chr6-125120207-1	chr6	125119707	125120707	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145979, exon 26 of 39)	exon (NM_145979, exon 26 of 39)	-11676.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	10.3	8.75	18.5	10.12	7.93	6.43	7.39	4.42	6.25
Merged-chr11-62557225-1	chr11	62556725	62557725	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	5494.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	13.16	16.59	15.72	11.47	7.0	24.11	10.56	3.98	12.49
Merged-chr6-42302556-1	chr6	42302056	42303056	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013491, intron 12 of 22)	intron (NM_013491, intron 12 of 22)	15871.0	NM_013491	12723.0	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	2.29	2.76	1.85	6.75	6.06	4.82	3.17	1.33	6.25
Merged-chr2-21056390-1	chr2	21055890	21056890	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	87516.0	NR_033225	433408.0	Mm.386941	NR_033225		Gm13375	-	predicted gene 13375	ncRNA	10.87	9.22	7.4	25.64	15.86	12.06	28.52	19.9	18.11
Merged-chr11-87754709-1	chr11	87754209	87755209	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2155.0	NR_029555	387160.0		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	60.07	61.75	59.2	42.51	38.25	57.87	67.6	73.4	54.33
Merged-chr11-118400226-1	chr11	118399726	118400726	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	1733.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	25.17	28.57	11.1	29.01	13.06	36.17	22.18	11.94	14.99
Merged-chr1-187586780-1	chr1	187586280	187587280	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22226.0	NM_001243792	26381.0	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.57	0.46	0.0	0.67	1.4	0.0	2.11	2.21	3.12
Merged-chr5-77245650-2	chr5	77245132	77246132	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19862.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	38.9	33.18	11.1	38.46	23.79	17.68	60.2	57.92	15.61
Merged-chr3-89511061-1	chr3	89510561	89511561	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9103.0	NM_080466	140493.0	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	2.86	2.76	7.4	3.37	0.93	0.0	1.06	0.44	6.25
Merged-chr19-36926886-1	chr19	36926386	36927386	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080706, intron 1 of 37)	intron (NM_001080706, intron 1 of 37)	807.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	266.0	330.38	217.36	215.23	282.7	191.3	562.95	612.84	255.43
Merged-chr2-124720442-1	chr2	124719942	124720942	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66861.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.58	3.23	8.32	3.37	4.67	4.82	5.28	3.98	5.62
Merged-chr13-73996681-1	chr13	73996181	73997181	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-12738.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	5.15	3.23	0.0	2.02	1.87	0.0	3.17	2.65	7.49
Merged-chr17-71618161-1	chr17	71617661	71618661	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175639, intron 1 of 17)	intron (NM_175639, intron 1 of 17)	1946.0	NM_175639	72515.0	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	23.45	15.21	13.87	14.84	12.6	11.25	20.07	21.22	21.86
Merged-chr11-94991984-3	chr11	94991455	94992455	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172261, exon 1 of 10)	exon (NM_172261, exon 1 of 10)	743.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	57.21	74.19	66.6	49.93	57.85	96.45	42.25	38.91	51.84
Merged-chr18-70482115-1	chr18	70481615	70482615	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289650, intron 5 of 8)	intron (NM_001289650, intron 5 of 8)	9449.0	NM_001289650	170461.0	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	4.0	1.84	1.85	5.4	2.33	3.22	2.11	1.33	2.5
Merged-chr9-59292364-1	chr9	59291864	59292864	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	792.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	164.75	217.95	191.47	177.45	210.86	177.64	216.52	269.28	127.4
Merged-chr19-37698906-2	chr19	37698399	37699399	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007811, exon 3 of 7)	exon (NM_007811, exon 3 of 7)	1091.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	5.15	0.46	1.85	5.4	0.47	3.22	1.06	0.44	1.25
Merged-chr8-71707969-2	chr8	71707460	71708460	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028715)	TTS (NM_028715)	-6160.0	NM_028189	72297.0	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	8.58	4.15	3.7	6.07	1.87	3.22	21.12	15.48	7.49
Merged-chr11-76622299-1	chr11	76621799	76622799	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-44560.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	46.91	45.16	60.12	56.68	76.04	74.75	73.93	84.01	33.72
Merged-chr9-65038866-1	chr9	65038366	65039366	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028906, intron 3 of 20)	Lx5|LINE|L1	6408.0	NM_028906	74388.0	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	8.58	6.45	9.25	11.47	11.2	19.29	11.62	8.4	4.37
Merged-chr7-122466396-1	chr7	122465896	122466896	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316672, intron 5 of 16)	B1F|SINE|Alu	177271.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	4.0	4.61	3.7	10.12	7.46	7.23	12.67	6.19	13.12
Merged-chr10-112801746-1	chr10	112801246	112802246	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36006.0	NR_152199	100042639.0	Mm.403280	NR_152199		Gm3942	-	predicted gene 3942	ncRNA	0.57	3.23	1.85	0.67	1.4	3.22	3.17	2.65	3.75
Merged-chr8-75098518-2	chr8	75098010	75099010	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010442, intron 3 of 4)	intron (NM_010442, intron 3 of 4)	4892.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	14.87	21.66	14.8	23.62	13.06	20.9	20.07	18.57	24.98
Merged-chr16-90868345-1	chr16	90867845	90868845	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199210, intron 2 of 7)	intron (NM_001199210, intron 2 of 7)	37486.0	NM_001316761	70967.0	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	1.72	0.92	0.0	2.02	2.33	3.22	2.11	2.65	3.12
Merged-chr11-54737054-1	chr11	54736554	54737554	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178626, intron 3 of 5)	RSINE1|SINE|B4	50649.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	14.3	11.98	16.65	7.42	10.26	15.27	9.51	12.82	6.25
Merged-chr17-84037969-1	chr17	84037469	84038469	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39417.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	6.86	6.45	3.7	8.77	7.0	23.31	4.22	0.88	8.74
Merged-chr3-145107063-1	chr3	145106563	145107563	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-7957.0	NM_178697	229933.0	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	6.86	4.61	5.55	17.54	4.67	8.84	3.17	5.31	9.37
Merged-chr15-77799634-3	chr15	77799155	77800155	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	42520.0	NM_022410	17886.0	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	39.47	50.23	37.0	31.71	28.46	50.64	49.64	42.45	42.47
Merged-chr8-82992285-1	chr8	82991785	82992785	+	660.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 2 of 6)	intron (NM_177378, intron 2 of 6)	128929.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	7.44	5.07	9.25	5.4	6.53	3.22	20.07	19.01	18.74
Merged-chr3-149118788-2	chr3	149118283	149119283	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155954.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	2.29	2.3	5.55	3.37	1.87	3.22	1.06	1.77	7.49
Merged-chr8-14678092-1	chr8	14677592	14678592	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-210444.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	14.3	4.61	7.4	9.45	8.86	21.7	10.56	15.92	5.0
Merged-chr12-56429552-1	chr12	56429052	56430052	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83658.0	NM_145442	217588.0	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	4.58	3.23	3.7	3.37	3.73	9.65	15.84	9.29	5.0
Merged-chr17-84194471-1	chr17	84193971	84194971	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	intron (NM_183021, intron 36 of 37)	-6524.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	3.43	6.91	2.77	7.42	3.27	4.02	3.17	1.77	2.5
Merged-chr13-24318859-1	chr13	24318359	24319359	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8545.0	NM_001284519	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.15	4.15	1.85	9.45	2.8	6.43	2.11	5.75	1.25
Merged-chr11-102393400-1	chr11	102392900	102393900	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016759)	promoter-TSS (NM_016759)	-3.0	NM_016759	51799.0	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	1.14	2.76	1.85	0.0	4.2	1.61	3.17	2.21	1.25
Merged-chr5-88628723-1	chr5	88628223	88629223	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359208, intron 8 of 13)	B1_Mur1|SINE|Alu	45210.0	NM_001359209	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	28.6	45.16	31.45	23.62	24.72	35.37	41.19	23.43	31.23
Merged-chr1-58296471-1	chr1	58295971	58296971	+	660.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008419, intron 10 of 35)	intron (NM_001008419, intron 10 of 35)	18145.0	NM_001008419	213043.0	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	0.57	3.69	1.85	3.37	1.4	3.22	1.06	0.44	0.0
Merged-chr2-79302613-2	chr2	79302106	79303106	+	660.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010576, intron 16 of 27)	intron (NM_010576, intron 16 of 27)	47180.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	13.73	7.83	14.8	8.1	6.53	13.66	7.39	6.63	5.0
Merged-chr1-152424907-3	chr1	152424415	152425415	+	659.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177756, intron 1 of 11)	intron (NM_177756, intron 1 of 11)	25048.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	12.59	5.99	3.7	7.42	7.93	1.61	7.39	15.03	11.87
Merged-chr9-59680171-3	chr9	59679696	59680696	+	659.922241	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011099)	TTS (NM_011099)	23828.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	6.29	1.84	5.55	4.05	1.87	5.63	3.17	1.77	1.87
Merged-chr1-16079231-3	chr1	16078729	16079729	+	659.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305227, intron 3 of 5)	intron (NM_001305227, intron 3 of 5)	14096.0	NM_001243238	75799.0	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	4.0	3.69	3.7	4.05	3.27	6.43	3.17	4.86	1.25
Merged-chr18-60625400-4	chr18	60624873	60625873	+	659.854187	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1068.0	NM_177340	104027.0	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	5.72	4.15	3.7	5.4	4.67	3.22	3.17	3.98	3.75
Merged-chr2-32574977-2	chr2	32574490	32575490	+	659.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198191)	promoter-TSS (NM_198191)	-728.0	NM_198191	227733.0	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	6.29	4.15	1.85	8.1	1.87	1.61	5.28	1.77	3.75
Merged-chr2-156344970-2	chr2	156344467	156345467	+	659.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-32263.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	14.3	11.06	7.4	8.1	5.6	3.22	8.45	6.63	9.99
Merged-chr15-68077600-2	chr15	68077081	68078081	+	659.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181275.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.58	5.07	0.0	0.67	4.67	3.22	3.17	1.77	2.5
Merged-chr14-45687356-3	chr14	45686852	45687852	+	659.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29209.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	12.01	19.35	28.67	14.84	10.26	21.7	16.9	17.69	14.99
Merged-chr6-83600067-3	chr6	83599590	83600590	+	659.777771	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27586.0	NM_001362080	70527.0	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	90.38	58.98	42.55	109.3	52.72	63.5	119.35	129.11	50.59
Merged-chr15-58818235-3	chr15	58817756	58818756	+	659.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	MLT1D|LTR|ERVL-MaLR	5171.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	108.12	117.96	69.37	132.92	118.03	72.34	68.65	83.57	33.1
Merged-chr15-33687836-2	chr15	33687305	33688305	+	659.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085421)	promoter-TSS (NM_001085421)	78.0	NM_001085421	239364.0	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	2.86	3.23	1.85	3.37	3.27	6.43	1.06	4.42	3.75
Merged-chr16-62858166-2	chr16	62857672	62858672	+	659.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	MTE-int|LTR|ERVL-MaLR	3865.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	22.31	21.66	17.57	14.17	16.79	18.49	21.12	15.48	34.35
Merged-chr10-111163951-2	chr10	111163450	111164450	+	659.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175489)	promoter-TSS (NM_175489)	-852.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	132.72	164.96	121.17	160.58	162.34	134.23	167.93	178.64	74.32
Merged-chr17-34420172-1	chr17	34419672	34420672	+	659.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001177, intron 5 of 19)	intron (NM_001001177, intron 5 of 19)	21352.0	NM_001163855	407788.0	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	2.86	5.07	5.55	4.05	0.0	1.61	4.22	4.86	4.37
Merged-chr2-44982597-3	chr2	44982046	44983046	+	659.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001355289)	TTS (NM_001355289)	40631.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	14.3	11.98	19.42	12.14	9.8	12.86	5.28	9.29	10.62
Merged-chr5-66293740-1	chr5	66293240	66294240	+	659.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302833, intron 10 of 12)	intron (NM_001302833, intron 10 of 12)	32899.0	NM_027602	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	8.58	8.75	8.32	8.1	4.2	6.43	15.84	18.13	16.24
Merged-chr13-103915871-1	chr13	103915371	103916371	+	659.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	4715.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	13.16	12.9	16.65	18.89	20.53	19.29	20.07	24.76	11.24
Merged-chr16-20718569-1	chr16	20718069	20719069	+	659.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001356423, exon 1 of 5)	5' UTR (NM_001356423, exon 1 of 5)	392.0	NM_001356423	245841.0	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	26.89	39.17	53.65	37.11	38.72	34.56	27.46	55.27	29.35
Merged-chr15-77538140-3	chr15	77537619	77538619	+	659.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14-int|LTR|ERV1	-4804.0	NM_175391	108956.0	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	14.3	6.45	5.55	10.8	12.6	24.92	22.18	13.71	20.61
Merged-chr3-90460518-3	chr3	90460024	90461024	+	659.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008727, intron 7 of 21)	intron (NM_008727, intron 7 of 21)	5342.0	NM_008727	18160.0	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	2.86	2.3	12.02	5.4	2.33	4.82	3.17	1.77	3.75
Merged-chr11-98036181-2	chr11	98035691	98036691	+	659.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146028)	TTS (NM_146028)	9267.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	14.3	2.76	6.47	5.4	3.73	5.63	9.51	7.52	1.87
Merged-chr16-90186346-3	chr16	90185845	90186845	+	659.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34397.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	8.58	5.07	2.77	6.07	0.93	0.0	3.17	1.33	0.0
Merged-chr1-165706324-3	chr1	165705842	165706842	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	1752.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	30.32	46.08	35.15	42.51	30.32	50.64	59.15	54.83	49.34
Merged-chr9-61373008-1	chr9	61372508	61373508	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001083927, exon 1 of 20)	5' UTR (NM_001083927, exon 1 of 20)	642.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	58.92	69.58	61.05	51.28	47.12	49.83	72.88	56.16	31.85
Merged-chr3-142890630-2	chr3	142890131	142891131	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152127, intron 1 of 1)	MTC|LTR|ERVL-MaLR	8136.0	NR_152127	320229.0	Mm.187582	NR_152127		9530052C20Rik	-	RIKEN cDNA 9530052C20 gene	ncRNA	3.43	1.84	5.55	4.05	2.33	5.63	6.34	9.29	3.75
Merged-chr10-83652556-2	chr10	83652049	83653049	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-3885.0	NM_145220	216190.0	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	17.16	27.19	13.87	29.69	19.13	14.47	17.96	11.94	8.74
Merged-chr12-3284688-1	chr12	3284188	3285188	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	B3A|SINE|B2	25281.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	53.2	77.87	60.12	35.76	48.52	48.23	68.65	71.19	46.22
Merged-chr19-47374650-2	chr19	47374145	47375145	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 3 of 14)	MLT1K|LTR|ERVL-MaLR	89766.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	2.29	4.15	9.25	2.02	2.8	3.22	7.39	2.21	1.25
Merged-chr6-82902777-2	chr6	82902267	82903267	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-20914.0	NR_040520	69652.0	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	4.58	4.61	0.0	3.37	2.33	1.61	2.11	3.54	2.5
Merged-chr2-127087469-1	chr2	127086969	127087969	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026678, intron 5 of 7)	RMER6B|LTR|ERVK	16812.0	NM_026678	109778.0	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	38.33	29.03	32.37	35.76	28.46	33.76	49.64	53.06	31.23
Merged-chr19-61152349-1	chr19	61151849	61152849	+	659.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR50A|LTR|ERVK	-11509.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	2.29	0.46	6.47	4.05	2.33	1.61	1.06	4.42	3.75
Merged-chr7-68093998-2	chr7	68093484	68094484	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	141727.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	5.15	2.3	9.25	3.37	7.46	1.61	6.34	0.44	5.62
Merged-chrX-130106808-1	chrX	130106308	130107308	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 21 of 26)	intron (NM_172493, intron 21 of 26)	357066.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	1.14	4.61	0.0	2.02	4.2	1.61	4.22	3.1	0.0
Merged-chr16-33966389-1	chr16	33965889	33966889	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009471, intron 1 of 5)	intron (NM_009471, intron 1 of 5)	649.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	76.66	56.68	49.95	75.57	59.25	60.28	63.37	66.77	29.98
Merged-chr8-84937410-2	chr8	84936914	84937914	+	659.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019945)	promoter-TSS (NM_019945)	-61.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	1.72	1.84	3.7	3.37	0.47	0.0	5.28	1.33	3.12
Merged-chr7-79831795-1	chr7	79831295	79832295	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008486, intron 15 of 20)	HAL1|LINE|L1	16415.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	7.44	6.45	2.77	17.54	10.26	16.08	10.56	7.07	6.25
Merged-chr2-122161732-1	chr2	122161232	122162232	+	659.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080510, intron 1 of 6)	intron (NM_080510, intron 1 of 6)	1032.0	NM_080510	70928.0	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	5.72	1.84	7.4	4.72	2.33	4.02	15.84	12.82	7.49
Merged-chr7-140990768-1	chr7	140990268	140991268	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19976.0	NM_025378	66141.0	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	2.29	3.23	9.25	4.72	4.2	0.8	6.34	1.33	5.0
Merged-chr1-43478072-1	chr1	43477572	43478572	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	32321.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	13.73	5.53	1.85	12.82	16.33	8.84	17.96	10.17	11.24
Merged-chr16-89833759-1	chr16	89833259	89834259	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 14 of 27)	intron (NM_009384, intron 14 of 27)	-15407.0	NM_001145887	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	3.43	1.38	0.0	2.7	4.2	3.22	2.11	2.21	0.0
Merged-chr6-97368292-1	chr6	97367792	97368792	+	659.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	90994.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	9.72	10.14	12.95	12.14	11.2	12.86	11.62	10.61	5.0
Merged-chr13-62470124-2	chr13	62469627	62470627	+	659.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3315.0	NM_001136496	71508.0	Mm.442497	NM_178875	ENSMUSG00000113450	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	3.43	4.15	0.0	5.4	2.8	1.61	2.11	3.54	0.0
Merged-chr15-77752735-2	chr15	77752215	77753215	+	659.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357895, intron 3 of 3)	intron (NM_001357895, intron 3 of 3)	2558.0	NM_001357896	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.57	3.23	0.92	2.02	5.13	1.61	3.17	3.1	6.25
Merged-chr19-34241423-2	chr19	34240926	34241926	+	659.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007392, exon 9 of 9)	3' UTR (NM_007392, exon 9 of 9)	8801.0	NM_001360720	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	8.58	8.29	4.62	5.4	3.73	1.61	12.67	13.71	6.87
Merged-chr6-125081998-2	chr6	125081485	125082485	+	659.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001163269, exon 2 of 2)	exon (NM_001163269, exon 2 of 2)	10708.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	2.29	4.15	3.7	5.4	1.87	3.22	5.28	1.77	1.25
Merged-chr12-117820297-2	chr12	117819805	117820805	+	659.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23556.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	4.0	3.23	0.0	2.02	3.73	0.0	2.11	2.21	3.75
Merged-chr16-30598756-2	chr16	30598256	30599256	+	659.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177632)	promoter-TSS (NM_177632)	-967.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	88.67	77.41	48.1	62.75	34.06	64.3	98.23	81.36	44.34
Merged-chr17-23741032-1	chr17	23740532	23741532	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023824)	promoter-TSS (NM_023824)	-702.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	16.02	10.14	22.2	10.8	6.53	10.45	8.45	10.61	15.61
Merged-chr7-59163096-1	chr7	59162596	59163596	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-65654.0	NM_001033962	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	15.45	23.96	31.45	15.52	25.19	23.31	24.29	23.43	18.74
Merged-chr1-58953921-3	chr1	58953429	58954429	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172406, intron 1 of 15)	intron (NM_172406, intron 1 of 15)	19553.0	NM_172406	70827.0	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	4.58	6.45	0.0	6.07	12.13	6.43	3.17	1.33	5.62
Merged-chr14-30617446-1	chr14	30616946	30617946	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011103, intron 1 of 17)	intron (NM_011103, intron 1 of 17)	-7136.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	9.72	12.44	22.2	16.19	14.46	29.74	26.4	26.97	33.72
Merged-chr10-16751716-3	chr10	16751223	16752223	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	344059.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	7.44	10.6	14.8	9.45	11.66	8.04	8.45	15.92	9.37
Merged-chr3-118562152-1	chr3	118561652	118562652	+	659.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_170778)	promoter-TSS (NM_170778)	-28.0	NM_170778	99586.0	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DHPDHase|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	4.0	0.46	1.85	5.4	3.27	6.43	3.17	1.77	5.62
Merged-chr16-46022752-3	chr16	46022252	46023252	+	659.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12339.0	NM_001134480	433022.0	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	4.0	4.61	0.0	2.02	2.33	4.82	5.28	0.88	0.0
Merged-chr17-43606931-2	chr17	43606436	43607436	+	659.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013737, intron 9 of 11)	B3A|SINE|B2	-15427.0	NR_045444	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	8.01	1.84	1.85	12.14	6.53	3.22	8.45	3.98	3.12
Merged-chr4-140971827-2	chr4	140971325	140972325	+	659.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355515, intron 3 of 7)	intron (NM_001355515, intron 3 of 7)	10554.0	NM_023374	67680.0	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	18.31	8.29	26.82	26.31	7.46	12.86	15.84	12.38	8.12
Merged-chr3-87528916-2	chr3	87528415	87529415	+	659.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359750, intron 3 of 4)	intron (NM_001359750, intron 3 of 4)	3337.0	NM_001359750	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	28.6	20.27	30.52	20.24	11.66	19.29	7.39	3.98	6.25
Merged-chr16-62856501-3	chr16	62855999	62856999	+	659.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011173, intron 1 of 14)	intron (NM_011173, intron 1 of 14)	2192.0	NM_011173	19128.0	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	17.16	19.35	20.35	14.17	12.6	23.31	20.07	19.01	12.49
Merged-chrX-106219639-2	chrX	106219115	106220115	+	659.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001167988, exon 2 of 8)	exon (NM_001167988, exon 2 of 8)	227.0	NM_001001176	407786.0	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	8.01	4.61	7.4	6.75	6.53	1.61	14.79	6.19	11.24
Merged-chr5-32013576-2	chr5	32013077	32014077	+	659.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 10 of 11)	intron (NM_144541, intron 10 of 11)	-122895.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	77.23	75.11	45.32	50.6	18.19	18.49	62.31	34.49	17.49
Merged-chr8-34817841-3	chr8	34817359	34818359	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176933, intron 3 of 3)	intron (NM_176933, intron 3 of 3)	10249.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	1.14	2.76	0.0	2.02	0.47	1.61	3.17	5.75	2.5
Merged-chr3-137823513-3	chr3	137823013	137824013	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39898.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	4.0	5.07	3.7	7.42	5.6	1.61	4.22	2.65	5.62
Merged-chr17-53468672-3	chr17	53468139	53469139	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-5318.0	NM_172497	211482.0	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	16.02	21.66	21.27	22.94	6.53	40.99	28.52	19.01	12.49
Merged-chr7-47054791-3	chr7	47054297	47055297	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026436)	TTS (NM_026436)	4157.0	NM_026436	67893.0	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	43.48	53.91	45.32	53.98	39.19	79.58	80.27	56.6	40.59
Merged-chr11-73186231-3	chr11	73185739	73186739	+	659.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357891, intron 10 of 11)	intron (NM_001357891, intron 10 of 11)	9156.0	NM_029564	76281.0	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	17.73	11.98	14.8	10.12	6.53	15.27	9.51	3.54	13.74
Merged-chr4-133206027-2	chr4	133205554	133206554	+	659.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6482.0	NM_008154	14748.0	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	12.59	7.37	13.87	13.49	9.8	16.08	7.39	4.42	5.0
Merged-chr15-93335952-2	chr15	93335450	93336450	+	659.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028315, intron 2 of 4)	intron (NR_028315, intron 2 of 4)	985.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	33.75	35.48	30.52	33.74	26.12	20.09	52.81	22.55	15.61
Merged-chr12-100397247-1	chr12	100396747	100397747	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033213, intron 9 of 19)	L1MB7|LINE|L1	120638.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	34.32	33.64	16.65	30.36	19.13	24.11	35.91	22.55	20.61
Merged-chr3-89093375-1	chr3	89092875	89093875	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001083807)	promoter-TSS (NM_001083807)	-12.0	NM_028188	72296.0	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	4.0	0.92	0.0	4.05	1.4	0.0	1.06	1.77	2.5
Merged-chr6-6307789-1	chr6	6307289	6308289	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	59130.0	NR_136905	101056138.0	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	1.14	2.3	3.7	4.05	6.53	8.84	3.17	0.88	8.12
Merged-chr5-34230814-1	chr5	34230314	34231314	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015039, intron 6 of 12)	intron (NM_001015039, intron 6 of 12)	-43104.0	NM_010753	17122.0	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	4.58	5.07	12.02	8.1	9.8	12.86	5.28	7.07	8.12
Merged-chr9-109932471-1	chr9	109931971	109932971	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205332, intron 1 of 17)	CpG	697.0	NM_008633	17758.0	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	59.49	43.31	38.85	50.6	41.05	70.73	65.48	33.6	39.97
Merged-chr13-120259080-1	chr13	120258580	120259580	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-4015.0	NM_001310627	236546.0	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	6.86	5.99	3.7	5.4	2.8	0.8	4.22	2.21	1.25
Merged-chr10-57842002-1	chr10	57841502	57842502	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47458.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	4.0	1.38	8.32	5.4	1.87	6.43	5.28	5.31	8.12
Merged-chr6-142831467-1	chr6	142830967	142831967	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045707, intron 6 of 6)	intron (NR_045707, intron 6 of 6)	17236.0	NR_045707	665037.0	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037	predicted gene 7457	ncRNA	2.86	3.69	5.55	6.07	0.93	3.22	5.28	0.44	6.25
Merged-chr10-10320535-1	chr10	10320035	10321035	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	151779.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.86	8.29	2.77	14.84	19.13	4.02	7.39	0.88	1.25
Merged-chr6-115375072-2	chr6	115374579	115375579	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001308354, intron 1 of 7)	L3|LINE|CR1	12730.0	NM_001308354	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	80.66	71.88	56.42	82.32	75.11	58.68	77.1	84.45	41.84
Merged-chr2-165075074-1	chr2	165074574	165075574	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15676.0	NR_033448	72211.0	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	4.58	0.46	0.0	1.35	0.93	1.61	3.17	0.88	6.25
Merged-chr2-102002536-1	chr2	102002036	102003036	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	116274.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	3.43	0.46	0.0	4.72	2.33	4.82	13.73	3.98	8.74
Merged-chr4-132063216-1	chr4	132062716	132063716	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	L2a|LINE|L2	8881.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	8.58	5.07	6.47	10.12	2.33	6.43	2.11	2.21	2.5
Merged-chr2-36237279-1	chr2	36236779	36237779	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008969, exon 3 of 11)	exon (NM_008969, exon 3 of 11)	6853.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	44.05	42.39	60.12	49.25	42.92	94.04	106.67	76.94	50.59
Merged-chr5-21372071-1	chr5	21371571	21372571	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008013)	promoter-TSS (NM_008013)	-602.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	52.63	43.77	18.5	58.7	54.11	22.51	69.71	65.0	29.35
Merged-chr13-43492842-2	chr13	43492361	43493361	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-11888.0	NM_019930	56705.0	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	7.44	8.75	0.0	6.07	5.13	4.82	9.51	8.4	7.49
Merged-chr16-90710525-1	chr16	90710025	90711025	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16846.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	4.0	2.76	3.7	6.75	8.86	1.61	3.17	4.86	1.25
Merged-chr4-53409756-1	chr4	53409256	53410256	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30657.0	NM_001159633	100434.0	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	5.72	6.91	5.55	10.8	5.6	11.25	3.17	9.73	9.99
Merged-chr8-105345788-1	chr8	105345288	105346288	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	2182.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	93.24	72.8	80.47	78.27	55.98	110.92	111.96	95.95	69.32
Merged-chr10-62896081-2	chr10	62895596	62896596	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8772.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	8.01	9.68	5.55	4.05	8.86	4.82	5.28	5.31	4.37
Merged-chr5-138193909-1	chr5	138193409	138194409	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177878)	promoter-TSS (NM_177878)	-405.0	NM_177878	330216.0	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	78.94	63.13	59.2	58.03	76.97	61.89	60.2	95.95	42.47
Merged-chr2-59163005-1	chr2	59162505	59163505	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	2155.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	41.19	53.45	37.0	35.09	27.99	24.92	54.92	53.5	14.99
Merged-chr14-21877581-1	chr14	21877081	21878081	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-28671.0	NM_026965	69156.0	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	1.72	2.76	1.85	4.72	3.27	3.22	4.22	0.44	3.75
Merged-chr17-13146496-1	chr17	13145996	13146996	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-14705.0	NM_199252	381058.0	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	4.58	4.61	3.7	15.52	6.06	5.63	9.51	8.84	11.24
Merged-chr13-8780654-2	chr13	8780167	8781167	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	90377.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	1.72	3.69	9.25	4.05	0.93	1.61	2.11	1.33	2.5
Merged-chr5-24053452-1	chr5	24052952	24053952	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22762.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	16.59	12.44	8.32	18.89	4.67	5.63	14.79	11.5	6.25
Merged-chr10-39240054-1	chr10	39239554	39240554	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76260.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	1.72	0.92	7.4	2.7	2.33	3.22	3.17	0.88	1.25
Merged-chr5-142797832-1	chr5	142797332	142798332	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178242, intron 2 of 15)	intron (NM_178242, intron 2 of 15)	19555.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	32.04	20.27	32.37	33.74	24.72	17.68	25.35	18.13	24.36
Merged-chr7-4845218-1	chr7	4844718	4845718	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172737)	promoter-TSS (NM_172737)	-522.0	NM_172737	232813.0	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	4.0	0.92	1.85	0.0	0.93	0.0	3.17	0.88	1.25
Merged-chr2-11532358-1	chr2	11531858	11532858	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	21571.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	9.15	9.22	7.4	4.72	14.46	14.47	13.73	9.73	6.25
Merged-chr3-144676505-1	chr3	144676005	144677005	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43830.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	5.15	4.15	5.55	1.35	2.33	13.66	5.28	9.73	11.87
Merged-chr18-49772581-1	chr18	49772081	49773081	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16980.0	NM_026854	68857.0	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	5.15	13.36	1.85	11.47	6.53	16.08	12.67	8.4	11.24
Merged-chr4-3089724-1	chr4	3089224	3090224	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-82359.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	3.43	2.3	0.0	2.02	2.8	4.82	4.22	3.54	6.25
Merged-chr11-110961919-1	chr11	110961419	110962419	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6114.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.0	4.61	3.7	10.12	8.86	3.22	4.22	2.21	1.25
Merged-chr8-106343042-1	chr8	106342542	106343542	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_021491	58994.0	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	1.72	5.53	0.92	4.72	4.67	6.43	0.0	2.21	0.62
Merged-chr18-38425145-1	chr18	38424645	38425645	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	B4A|SINE|B4	6238.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	10.87	8.75	14.8	23.62	11.66	14.47	11.62	8.84	13.12
Merged-chr6-17516213-1	chr6	17515713	17516713	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008591, intron 4 of 21)	intron (NM_008591, intron 4 of 21)	52256.0	NM_008591	17295.0	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	8.01	8.75	0.0	10.12	2.8	3.22	4.22	0.88	6.25
Merged-chr4-141721324-1	chr4	141720824	141721824	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001017966, intron 1 of 9)	intron (NM_001017966, intron 1 of 9)	2095.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	55.49	47.0	56.42	45.88	34.52	45.82	136.25	110.1	53.08
Merged-chr1-84943812-1	chr1	84943312	84944312	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-8729.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	3.43	1.38	1.85	4.05	4.67	6.43	0.0	3.1	1.25
Merged-chr4-150248253-2	chr4	150247754	150248754	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 11 of 11)	intron (NM_023119, intron 11 of 11)	10930.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	2.29	0.0	0.0	2.02	2.33	4.82	3.17	3.54	3.75
Merged-chr4-148662308-1	chr4	148661808	148662808	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085505, intron 5 of 10)	intron (NM_001085505, intron 5 of 10)	18991.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.72	2.76	5.55	3.37	1.87	0.8	6.34	3.98	2.5
Merged-chr16-24935475-1	chr16	24934975	24935975	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	B3A|SINE|B2	-124164.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	48.05	69.12	60.12	62.07	54.58	64.3	49.64	50.85	48.09
Merged-chr10-56369366-3	chr10	56368824	56369824	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7976.0	NM_010288	14609.0	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	5.15	0.46	6.47	4.05	0.93	1.61	5.28	1.77	1.25
Merged-chr16-87635057-2	chr16	87634551	87635551	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-63903.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	88.1	80.18	60.12	109.98	64.38	77.16	70.76	40.24	28.73
Merged-chr3-54764660-1	chr3	54764160	54765160	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019483, intron 1 of 5)	intron (NM_019483, intron 1 of 5)	9078.0	NM_019483	55994.0	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	1.72	1.84	5.55	2.7	3.73	4.02	2.11	1.77	8.74
Merged-chr18-32204942-2	chr18	32204443	32205443	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011946, intron 7 of 16)	intron (NM_011946, intron 7 of 16)	-35388.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	13.73	11.06	14.8	9.45	8.4	20.9	12.67	3.98	6.87
Merged-chr11-54485182-1	chr11	54484682	54485682	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-37663.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	8.01	4.61	9.25	10.12	7.46	8.84	10.56	7.52	4.37
Merged-chr14-48459553-2	chr14	48459041	48460041	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	13189.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	52.06	58.06	45.32	31.71	40.59	65.11	31.69	32.72	24.98
Merged-chr19-21139202-1	chr19	21138702	21139702	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34492.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	4.0	4.61	5.55	7.42	1.87	2.41	2.11	0.88	3.75
Merged-chr7-113518329-1	chr7	113517829	113518829	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360668, intron 1 of 12)	intron (NM_001360668, intron 1 of 12)	4495.0	NM_001360669	67420.0	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	34.9	52.07	36.07	41.83	34.52	45.82	43.3	31.84	38.1
Merged-chr19-32172524-1	chr19	32172024	32173024	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144792, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	38489.0	NM_001168526	208449.0	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	1.14	4.15	0.0	8.1	3.73	9.65	10.56	3.1	5.0
Merged-chr6-108753699-1	chr6	108753199	108754199	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29360.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	12.59	6.91	1.85	18.22	12.13	9.65	5.28	5.75	3.12
Merged-chr8-83106183-2	chr8	83105693	83106693	+	659.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-59159.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	14.3	23.5	46.25	13.49	6.53	21.7	13.73	12.82	8.12
Merged-chr11-115670726-1	chr11	115670226	115671226	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	28808.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	29.75	29.49	28.67	36.43	36.85	24.11	42.25	36.7	31.23
Merged-chr9-20757220-1	chr9	20756720	20757720	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10924.0	NM_001357639	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	4.0	0.0	8.32	3.37	3.27	3.22	0.0	3.1	1.25
Merged-chr19-9985809-2	chr19	9985298	9986298	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010239)	TTS (NM_010239)	3152.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	62.93	36.86	38.85	61.4	53.65	38.58	46.47	48.2	19.98
Merged-chr18-44400601-1	chr18	44400101	44401101	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027490, intron 4 of 10)	B3|SINE|B2	20101.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	1.14	5.99	0.0	0.67	2.33	1.61	3.17	2.21	3.75
Merged-chr12-35539208-1	chr12	35538708	35539708	+	659.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4219.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	1.72	4.15	7.4	5.4	4.2	1.61	6.34	3.1	2.5
Merged-chr9-106289050-1	chr9	106288550	106289550	+	659.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 6 of 10)	intron (NM_027354, intron 6 of 10)	7989.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	4.0	3.69	0.0	1.35	1.87	9.65	0.0	1.33	5.0
Merged-chr11-118360757-2	chr11	118360256	118361256	+	658.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5345.0	NM_011594	21858.0	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	7.44	17.97	17.57	18.22	14.93	34.56	8.45	5.31	16.24
Merged-chr11-100362692-3	chr11	100362193	100363193	+	658.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6552.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	5.15	4.15	0.0	5.4	1.4	0.0	3.17	3.54	0.0
Merged-chr10-79986580-3	chr10	79986056	79987056	+	658.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2044.0	NM_007725	12798.0	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	90.38	121.19	91.57	87.71	64.84	98.87	132.02	154.76	83.69
Merged-chr15-78254989-1	chr15	78254489	78255489	+	658.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 5 of 9)	intron (NM_008677, intron 5 of 9)	10178.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	8.58	11.98	14.8	8.1	5.6	8.04	5.28	3.54	6.87
Merged-chr9-121759812-2	chr9	121759269	121760269	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	174.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	1.14	0.46	6.47	3.37	3.27	0.0	1.06	0.44	1.25
Merged-chr15-91260680-2	chr15	91260174	91261174	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68667.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.86	11.98	10.17	12.14	7.0	9.65	4.22	3.54	6.25
Merged-chr2-28478826-2	chr2	28478312	28479312	+	658.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10746.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	11.44	10.14	7.4	10.12	17.73	12.06	6.34	8.84	6.25
Merged-chr7-142094741-2	chr7	142094141	142095141	+	658.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008748, intron 1 of 6)	CpG	643.0	NM_008748	18218.0	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	68.07	29.95	16.65	97.83	31.72	17.68	50.7	11.94	5.62
Merged-chr10-127593655-1	chr10	127593155	127594155	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 9 of 88)	intron (NM_008512, intron 9 of 88)	27493.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	60.07	70.5	57.35	101.88	71.84	99.67	118.29	106.12	68.7
Merged-chr10-62511664-1	chr10	62511164	62512164	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 1 of 3)	intron (NM_001358965, intron 1 of 3)	-3907.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	7.44	6.45	5.55	12.82	2.8	4.82	2.11	3.1	2.5
Merged-chr15-80043472-1	chr15	80042972	80043972	+	658.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28664.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	54.92	46.54	58.27	55.33	41.99	73.95	57.03	30.07	33.72
Merged-chr16-88483548-2	chr16	88483066	88484066	+	658.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx3_Mus|LINE|L1	23412.0	NM_181490	239931.0	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	3.43	5.99	1.85	5.4	0.93	4.02	7.39	3.1	0.62
Merged-chr9-65522972-2	chr9	65522478	65523478	+	658.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57109.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	8.01	4.15	7.4	6.07	5.13	2.41	9.51	7.52	8.74
Merged-chr8-124793387-2	chr8	124792882	124793882	+	658.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_198632, exon 1 of 10)	5' UTR (NM_198632, exon 1 of 10)	363.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	3.43	0.46	0.0	5.4	1.4	0.0	0.0	0.44	0.0
Merged-chr15-39362255-2	chr15	39361736	39362736	+	658.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053271, intron 5 of 26)	intron (NM_053271, intron 5 of 26)	163950.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	3.43	3.69	0.0	1.35	5.6	1.61	1.06	2.65	0.0
Merged-chr19-11786965-3	chr19	11786473	11787473	+	658.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 5 of 10)	intron (NM_011502, intron 5 of 10)	16558.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	30.32	26.26	21.27	41.83	26.59	32.15	8.45	14.15	9.37
Merged-chr13-37749257-2	chr13	37748753	37749753	+	658.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76785.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.72	2.76	10.17	8.77	4.2	3.22	11.62	5.75	9.99
Merged-chr3-30855138-1	chr3	30854638	30855638	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001134386)	promoter-TSS (NM_001134386)	-812.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	11.44	4.15	9.25	9.45	2.33	7.23	2.11	7.52	3.12
Merged-chr7-68059962-2	chr7	68059463	68060463	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	107706.0	NM_010513	16001.0	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	6.29	4.15	1.85	4.72	1.4	4.82	6.34	4.86	0.0
Merged-chr10-37335285-2	chr10	37334783	37335783	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-196357.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	12.01	10.6	0.92	5.4	5.13	10.45	7.39	3.1	12.49
Merged-chr2-72201832-1	chr2	72201332	72202332	+	658.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355478, intron 11 of 26)	intron (NM_001355478, intron 11 of 26)	-83805.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	6.86	2.3	0.0	1.35	1.87	3.22	66.54	46.43	27.48
Merged-chr10-84514317-2	chr10	84513822	84514822	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19566.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.57	2.76	1.85	2.02	0.47	0.8	2.11	0.88	4.37
Merged-chr8-84928835-2	chr8	84928345	84929345	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019945, intron 6 of 25)	intron (NM_019945, intron 6 of 25)	8508.0	NM_019945	56527.0	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	6.29	0.46	2.77	1.35	1.87	2.41	1.06	2.65	3.12
Merged-chr12-85364626-1	chr12	85364126	85365126	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026775, intron 1 of 4)	MTD|LTR|ERVL-MaLR	10091.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	26.89	15.21	20.35	20.92	18.19	32.15	16.9	15.92	16.86
Merged-chr5-149641866-1	chr5	149641366	149642366	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5530.0	NM_001347534	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	5.72	4.15	0.0	3.37	9.8	4.82	3.17	7.07	5.0
Merged-chr12-16896266-2	chr12	16895778	16896778	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	1300.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	66.93	117.04	52.72	67.47	60.65	52.25	68.65	56.16	30.6
Merged-chr10-61344221-2	chr10	61343715	61344715	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013753, intron 10 of 19)	intron (NM_013753, intron 10 of 19)	39308.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	6.29	2.76	5.55	4.72	1.87	1.61	4.22	0.44	2.5
Merged-chr17-71529218-1	chr17	71528718	71529718	+	658.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2361.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	6.86	3.23	8.32	4.72	4.2	18.49	19.01	32.28	24.36
Merged-chr19-46553765-1	chr19	46553265	46554265	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355233, intron 2 of 6)	intron (NM_001355233, intron 2 of 6)	19417.0	NM_001355233	56350.0	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	4.0	7.37	14.8	8.1	4.67	3.22	11.62	9.29	8.74
Merged-chr18-53179086-2	chr18	53178610	53179610	+	658.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357463, intron 1 of 15)	intron (NM_001357463, intron 1 of 15)	2818.0	NM_026386	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	33.18	11.98	25.9	10.12	10.26	22.51	54.92	21.67	29.98
Merged-chr2-79339245-2	chr2	79338758	79339758	+	658.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048176, intron 10 of 12)	intron (NM_001048176, intron 10 of 12)	83832.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	21.17	27.19	16.65	23.62	16.79	12.86	36.97	33.16	10.62
Merged-chr18-84683755-3	chr18	84683265	84684265	+	658.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	B2_Mm2|SINE|B2	-1706.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	29.17	33.18	6.47	25.64	19.59	19.29	22.18	23.88	23.73
Merged-chr17-35591065-2	chr17	35590572	35591572	+	658.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23587.0	NM_175148	69542.0	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	5.15	7.37	3.7	17.54	3.27	3.22	4.22	2.21	2.5
Merged-chr1-6492980-1	chr1	6492480	6493480	+	658.400024	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	5749.0	NM_001244692	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	5.15	11.06	4.62	4.72	6.53	2.41	7.39	5.31	6.87
Merged-chr13-55465975-3	chr13	55465427	55466427	+	658.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	1660.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	16.02	3.69	2.77	8.1	0.93	9.65	4.22	3.98	1.25
Merged-chr12-3808377-3	chr12	3808013	3809013	+	658.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271753, intron 1 of 22)	intron (NM_001271753, intron 1 of 22)	1353.0	NM_001271753	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	34.9	49.76	56.42	44.53	61.58	81.18	81.33	91.53	47.46
Merged-chr2-38351017-2	chr2	38350534	38351534	+	658.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010710)	promoter-TSS (NM_010710)	-274.0	NM_010710	16870.0	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.0	4.61	0.0	0.67	0.93	1.61	1.06	0.88	1.25
Merged-chr2-28440998-2	chr2	28440500	28441500	+	658.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-6941.0	NM_001005420	241289.0	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	6.86	5.53	1.85	6.07	5.6	1.61	7.39	10.17	7.49
Merged-chr5-150156221-2	chr5	150155713	150156713	+	658.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-103717.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.72	6.91	1.85	4.72	4.67	10.45	9.51	2.65	2.5
Merged-chr1-125432616-3	chr1	125432110	125433110	+	658.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	intron (NM_001205386, intron 2 of 12)	3117.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	98.97	115.2	73.07	92.44	72.78	53.85	148.92	189.25	87.43
Merged-chr12-57243824-1	chr12	57243324	57244324	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	ORR1B1|LTR|ERVL-MaLR	13399.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	8.58	7.83	1.85	7.42	5.13	3.22	2.11	3.1	2.5
Merged-chr5-123245751-1	chr5	123245251	123246251	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026000, intron 4 of 5)	intron (NM_026000, intron 4 of 5)	17561.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	4.0	0.92	1.85	5.4	0.93	0.0	2.11	2.65	1.87
Merged-chr9-95571119-1	chr9	95570619	95571619	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	11302.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	103.54	94.0	51.8	101.21	101.7	118.16	87.66	125.58	65.58
Merged-chr1-132067995-1	chr1	132067495	132068495	+	658.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172510)	promoter-TSS (NM_172510)	67.0	NM_172510	213006.0	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	4.58	0.92	0.0	2.02	5.6	4.82	4.22	0.44	1.25
Merged-chr15-83112971-1	chr15	83112471	83113471	+	658.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023475, intron 9 of 11)	intron (NM_023475, intron 9 of 11)	9830.0	NM_001358061	74778.0	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	8.58	8.29	16.65	4.05	2.8	8.04	24.29	19.01	5.0
Merged-chr4-9665866-3	chr4	9665366	9666366	+	658.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290367, intron 1 of 22)	intron (NM_001290367, intron 1 of 22)	3296.0	NM_023066	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	12.59	6.91	3.7	10.12	5.13	4.82	9.51	5.31	2.5
Merged-chr4-101367468-3	chr4	101366969	101367969	+	658.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040640, intron 2 of 3)	intron (NR_040640, intron 2 of 3)	-11221.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	8.58	7.37	5.55	7.42	3.27	0.8	4.22	1.77	2.5
Merged-chr5-30806292-2	chr5	30805807	30806807	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8334.0	NM_133350	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	4.58	7.37	1.85	4.05	0.47	0.0	6.34	0.44	0.0
Merged-chr13-23454099-2	chr13	23453565	23454565	+	658.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11836.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	33.18	40.55	30.52	26.99	22.86	51.44	48.58	48.2	34.97
Merged-chr14-54731594-2	chr14	54731093	54732093	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016972, intron 7 of 10)	intron (NM_016972, intron 7 of 10)	-19419.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	5.72	6.91	5.55	5.4	7.93	6.43	7.39	10.17	5.0
Merged-chr1-138506860-2	chr1	138506380	138507380	+	658.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	112877.0	NM_021605	59125.0	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	10.87	10.6	12.02	11.47	11.66	8.84	20.07	13.71	16.24
Merged-chr3-65818797-2	chr3	65818284	65819284	+	658.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166659, intron 11 of 12)	intron (NM_001166659, intron 11 of 12)	139465.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	12.01	20.74	18.5	8.1	3.73	10.45	13.73	12.38	10.62
Merged-chr6-87504154-3	chr6	87503640	87504640	+	658.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	-7813.0	NM_175476	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	68.65	57.6	98.05	64.1	42.45	60.28	57.03	53.06	70.57
Merged-chr3-105044025-3	chr3	105043525	105044525	+	658.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	8928.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	47.48	51.61	43.47	41.83	33.12	27.33	64.43	55.71	29.98
Merged-chr1-190944466-3	chr1	190943950	190944950	+	658.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357133, intron 8 of 8)	intron (NM_001357133, intron 8 of 8)	15628.0	NM_001357133	52477.0	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	1.72	1.38	7.4	0.67	3.73	4.82	4.22	4.42	3.75
Merged-chr9-32500293-3	chr9	32499782	32500782	+	658.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	41170.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	50.34	38.25	49.02	57.35	38.25	46.62	39.08	26.97	44.34
Merged-chr14-56694053-2	chr14	56693556	56694556	+	658.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360072, intron 11 of 13)	LSU-rRNA_Hsa|rRNA|rRNA	6944.0	NR_046209	100503823.0	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	1.72	5.99	1.85	2.7	0.93	6.43	2.11	3.98	2.5
Merged-chr9-56995604-2	chr9	56995089	56996089	+	658.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019651, exon 1 of 13)	5' UTR (NM_019651, exon 1 of 13)	621.0	NM_019651	56294.0	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	118.99	119.8	127.64	143.04	130.16	139.06	154.2	99.05	83.69
Merged-chr1-131181820-2	chr1	131181324	131182324	+	658.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018750, intron 3 of 5)	intron (NM_018750, intron 3 of 5)	18361.0	NM_001311094	54354.0	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	7.44	3.69	14.8	2.02	3.27	3.22	6.34	5.75	2.5
Merged-chr5-66090234-3	chr5	66089745	66090745	+	658.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	7934.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	32.61	34.1	48.1	56.68	29.39	53.05	72.88	78.71	31.85
Merged-chr5-142816853-4	chr5	142816317	142817317	+	658.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178242, intron 1 of 15)	CpG-11746	570.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	60.64	124.41	143.37	71.52	58.78	118.16	101.39	126.46	127.4
Merged-chr8-104108082-3	chr8	104107589	104108589	+	658.111145	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	(GA)n|Simple_repeat|Simple_repeat	-2216.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	18.31	14.28	10.17	22.27	16.79	18.49	13.73	13.27	8.12
Merged-chr11-121342902-2	chr11	121342409	121343409	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025793, intron 2 of 9)	intron (NM_025793, intron 2 of 9)	11538.0	NM_025793	66840.0	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	17.16	11.98	20.35	17.54	17.26	27.33	19.01	8.4	16.86
Merged-chr19-37702552-1	chr19	37702052	37703052	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4744.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	6.29	1.84	0.0	2.02	5.6	4.82	2.11	2.21	0.0
Merged-chr9-40815284-1	chr9	40814784	40815784	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	14011.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.0	4.15	3.7	4.72	4.2	1.61	64.43	69.86	48.71
Merged-chr5-125158330-1	chr5	125157830	125158830	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	20884.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	12.01	6.91	3.7	11.47	3.27	12.86	4.22	0.44	7.49
Merged-chr3-153297944-1	chr3	153297444	153298444	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126464, intron 1 of 1)	intron (NR_126464, intron 1 of 1)	705.0	NR_126464	75489.0	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	6.86	6.91	0.0	0.67	2.33	6.43	3.17	5.31	1.25
Merged-chr18-35573549-1	chr18	35573049	35574049	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010771, intron 2 of 14)	intron (NM_010771, intron 2 of 14)	11391.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	20.59	14.75	18.5	15.52	14.0	21.7	19.01	19.46	22.48
Merged-chr8-13493540-1	chr8	13493040	13494040	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	995.0	NM_019521	14456.0	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	10.87	4.15	5.55	9.45	3.27	12.86	3.17	2.65	1.25
Merged-chr17-10315074-1	chr17	10314574	10315574	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	4287.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	16.59	26.73	22.2	47.9	38.25	36.97	44.36	25.2	26.23
Merged-chr6-87248622-1	chr6	87248122	87249122	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	87153.0	NM_054041	69538.0	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	5.15	4.61	0.0	3.37	1.87	1.61	10.56	0.88	1.25
Merged-chr15-99772004-1	chr15	99771504	99772504	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028015, intron 1 of 9)	CpG	511.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	23.45	9.22	21.27	35.09	28.92	50.64	35.91	13.27	20.61
Merged-chr12-99544482-2	chr12	99543976	99544976	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19365.0	NR_136760	102639404.0	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	12.01	7.83	4.62	8.1	5.6	8.84	16.9	11.05	8.74
Merged-chr17-46891359-1	chr17	46890859	46891859	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178385, exon 1 of 1)	exon (NM_178385, exon 1 of 1)	738.0	NM_178385	72726.0	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	95.53	80.18	56.42	102.56	87.24	77.97	86.61	59.25	30.6
Merged-chr8-117453346-2	chr8	117452848	117453848	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106045)	TTS (NR_106045)	325.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	43.48	37.78	29.6	49.25	42.92	40.99	47.53	53.94	26.23
Merged-chrX-99682717-2	chrX	99682197	99683197	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-138372.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	6.29	5.99	5.55	7.42	7.93	9.65	10.56	2.65	5.0
Merged-chr9-103175001-1	chr9	103174501	103175501	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	27064.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	2.86	2.76	1.85	3.37	0.93	3.22	5.28	1.33	1.25
Merged-chr2-153163138-1	chr2	153162638	153163638	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133847, intron 1 of 17)	intron (NM_133847, intron 1 of 17)	1837.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	49.77	69.58	30.52	30.36	31.72	36.97	62.31	30.51	23.11
Merged-chr4-82876891-1	chr4	82876391	82877391	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8260.0	NM_009887	12622.0	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	2.29	3.23	3.7	0.0	2.8	4.82	4.22	0.44	0.0
Merged-chr16-11824257-1	chr16	11823757	11824757	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146067, intron 3 of 3)	intron (NM_146067, intron 3 of 3)	44555.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	3.43	4.15	3.7	1.35	4.2	8.84	6.34	4.42	2.5
Merged-chr11-50200879-1	chr11	50200379	50201379	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026543)	TTS (NM_026543)	9941.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	11.44	2.76	9.25	2.7	5.13	7.23	1.06	4.86	8.74
Merged-chr5-65776791-1	chr5	65776291	65777291	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024917, intron 3 of 19)	RMER4B|LTR|ERVK	13270.0	NM_001024917	333789.0	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	15.45	14.75	17.57	10.12	6.53	11.25	24.29	8.4	11.24
Merged-chr2-9881316-1	chr2	9880816	9881816	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024257)	promoter-TSS (NR_024257)	70.0	NR_024257	381347.0	Mm.441450	NR_024257		4930412O13Rik	Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	1.14	2.3	3.7	0.0	2.33	3.22	4.22	2.21	1.25
Merged-chr1-130372249-1	chr1	130371749	130372749	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50575.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	2.29	4.61	0.0	2.7	4.2	0.0	0.0	3.1	0.62
Merged-chr1-34386689-2	chr1	34386181	34387181	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR20C|LTR|ERVK	46518.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	6.29	3.69	6.47	2.02	3.27	3.22	8.45	3.1	0.62
Merged-chr5-53213641-1	chr5	53213141	53214141	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172710)	promoter-TSS (NM_172710)	-189.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	1.72	0.46	1.85	4.72	1.87	0.0	2.11	1.77	2.5
Merged-chr16-18425845-1	chr16	18425345	18426345	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013711)	promoter-TSS (NM_013711)	-572.0	NM_001353143	26462.0	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	61.21	70.96	49.02	93.79	82.11	66.71	103.51	92.41	54.33
Merged-chr2-124709491-2	chr2	124708931	124709931	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55850.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	69.22	124.41	122.09	95.14	82.57	118.16	162.65	129.11	83.69
Merged-chr9-90112550-2	chr9	90112060	90113060	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039147, intron 1 of 12)	(CCA)n|Simple_repeat|Simple_repeat	2260.0	NM_001039147	21761.0	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	68.65	92.16	53.65	49.93	48.52	71.54	99.28	105.24	69.32
Merged-chr15-58595663-1	chr15	58595163	58596163	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	180195.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	36.04	42.39	27.75	29.01	34.52	33.76	31.69	40.24	12.49
Merged-chr11-83657574-1	chr11	83657074	83658074	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5010.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	44.62	38.25	36.07	33.06	28.46	35.37	26.4	23.43	34.97
Merged-chr7-25030272-2	chr7	25029767	25030767	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360067, intron 12 of 19)	LTR50|LTR|ERVL	-24330.0	NM_001290469	232975.0	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.57	1.84	3.7	4.05	1.4	2.41	6.34	2.65	2.5
Merged-chr1-91045013-1	chr1	91044513	91045513	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	-8431.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	45.76	54.37	28.67	43.18	16.33	16.08	27.46	25.2	22.48
Merged-chr1-74273828-1	chr1	74273328	74274328	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4772.0	NM_174985	227289.0	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	8.01	5.53	4.62	6.75	1.87	6.43	8.45	5.75	3.75
Merged-chr9-50501431-2	chr9	50500938	50501938	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029639, intron 3 of 3)	intron (NM_029639, intron 3 of 3)	3367.0	NR_040714	69631.0	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	1.72	4.15	3.7	6.07	5.13	4.82	3.17	0.44	5.0
Merged-chrX-20923100-1	chrX	20922600	20923600	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2182.0	NM_013680	20964.0	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	27.46	23.5	18.5	27.66	11.2	16.08	25.35	25.2	27.48
Merged-chr14-16598355-1	chr14	16597855	16598855	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289761, intron 2 of 8)	intron (NM_001289761, intron 2 of 8)	-22879.0	NM_001289762	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	4.58	1.84	3.7	4.05	3.73	2.41	1.06	1.33	0.0
Merged-chr15-5009787-1	chr15	5009287	5010287	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243837, intron 12 of 17)	intron (NM_001243837, intron 12 of 17)	53986.0	NM_001243837	109828.0	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.0	3.69	8.32	2.02	3.27	3.22	0.0	4.42	3.75
Merged-chr18-44659080-1	chr18	44658580	44659580	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-2585.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	4.58	4.61	11.1	0.67	1.87	3.22	1.06	1.33	1.25
Merged-chr3-121618788-2	chr3	121618290	121619290	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	24695.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.57	3.23	4.62	0.0	5.6	1.61	6.34	3.54	3.75
Merged-chr3-141477005-1	chr3	141476505	141477505	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	11441.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	7.44	6.91	4.62	6.75	5.13	6.43	7.39	3.54	5.0
Merged-chr8-94433624-1	chr8	94433124	94434124	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015514, exon 3 of 3)	non-coding (NR_015514, exon 3 of 3)	1479.0	NR_015514	320377.0	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	17.73	32.25	26.82	20.24	22.86	8.04	31.69	35.37	11.87
Merged-chr10-89442186-1	chr10	89441686	89442686	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079876, intron 1 of 10)	intron (NM_001079876, intron 1 of 10)	1781.0	NM_001284344	237436.0	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	15.45	20.27	0.0	18.89	25.19	20.9	9.51	10.61	5.62
Merged-chr19-46047648-1	chr19	46047148	46048148	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2337.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	5.15	3.69	10.17	10.8	3.27	11.25	1.06	2.21	7.49
Merged-chr10-95256319-3	chr10	95255812	95256812	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	67397.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	17.16	14.75	19.42	17.54	13.53	9.65	20.07	16.36	8.12
Merged-chr9-66349904-1	chr9	66349404	66350404	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145617)	promoter-TSS (NM_145617)	-546.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	57.21	63.59	64.75	71.52	64.38	62.7	85.55	112.31	46.22
Merged-chr17-85494967-1	chr17	85494467	85495467	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123429.0	NR_038084	100043902.0	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.29	1.38	0.0	2.7	4.67	4.02	4.22	5.31	0.0
Merged-chr4-130798126-1	chr4	130797626	130798626	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	5589.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	217.38	166.34	208.11	240.2	181.47	223.45	284.11	264.42	138.02
Merged-chr11-23020443-2	chr11	23019979	23020979	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028672, exon 3 of 4)	exon (NM_028672, exon 3 of 4)	7092.0	NM_028672	73873.0	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	18.31	17.05	21.27	24.29	16.79	16.08	15.84	24.76	18.11
Merged-chr5-148535083-1	chr5	148534583	148535583	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	16590.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	8.58	13.36	15.72	12.14	7.46	5.63	17.96	15.48	17.49
Merged-chr19-12466959-1	chr19	12466459	12467459	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_172442, exon 9 of 9)	3' UTR (NM_172442, exon 9 of 9)	6180.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	95.53	86.63	86.95	109.98	62.51	95.65	57.03	56.6	34.35
Merged-chr12-118849036-2	chr12	118848619	118849619	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177082, exon 3 of 3)	exon (NM_177082, exon 3 of 3)	2790.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	3.43	3.23	1.85	1.35	0.0	4.82	0.0	1.33	0.0
Merged-chr5-148594877-2	chr5	148594363	148595363	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42075.0	NM_001359199	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	14.87	6.91	14.8	15.52	10.73	12.86	22.18	16.8	15.61
Merged-chr7-109463005-2	chr7	109462502	109463502	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170913, intron 10 of 19)	intron (NM_001170913, intron 10 of 19)	-23949.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	1.72	0.92	5.55	4.05	1.87	0.0	3.17	0.44	6.25
Merged-chr4-44166854-1	chr4	44166354	44167354	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038993, intron 1 of 11)	intron (NM_001038993, intron 1 of 11)	684.0	NM_175201	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	19.45	28.11	14.8	28.34	25.66	30.54	31.69	29.63	23.73
Merged-chr14-21843453-1	chr14	21842953	21843953	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011695, intron 8 of 9)	intron (NM_011695, intron 8 of 9)	-4125.0	NM_176925	319486.0	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	8.01	5.53	23.12	8.1	11.2	24.11	9.51	6.19	6.25
Merged-chr6-91718708-1	chr6	91718208	91719208	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009320, intron 2 of 14)	intron (NM_009320, intron 2 of 14)	34641.0	NM_009320	21366.0	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	7.44	6.91	7.4	10.8	11.66	9.65	9.51	7.96	8.74
Merged-chr15-81836183-2	chr15	81835682	81836682	+	658.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22144.0	NM_020507	57259.0	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	177.91	146.53	124.87	187.57	147.88	135.84	240.81	211.8	102.42
Merged-chr7-80749197-1	chr7	80748697	80749697	+	658.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 14 of 37)	B2_Mm1a|SINE|B2	54134.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	3.43	2.3	1.85	4.05	2.33	7.23	6.34	3.1	7.49
Merged-chr5-143066662-2	chr5	143066173	143067173	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	46347.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	18.88	18.89	14.8	13.49	12.13	22.51	11.62	18.13	20.61
Merged-chr3-60219183-1	chr3	60218683	60219683	+	658.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137314.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	13.16	4.61	7.4	4.05	7.93	0.0	6.34	5.75	3.75
Merged-chr12-24534312-3	chr12	24533807	24534807	+	657.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020614, intron 8 of 14)	(TTG)n|Simple_repeat|Simple_repeat	35726.0	NR_028341	21340.0	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	20.02	34.1	17.57	24.29	21.46	42.6	38.02	53.5	52.46
Merged-chr19-45311106-3	chr19	45310589	45311589	+	657.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52645.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.0	1.84	0.0	2.7	2.33	4.82	2.11	3.1	5.62
Merged-chr16-38789175-3	chr16	38788700	38789700	+	657.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178924, intron 1 of 7)	intron (NM_178924, intron 1 of 7)	11003.0	NM_178924	22268.0	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	8.58	10.6	6.47	4.05	2.33	4.02	4.22	4.86	2.5
Merged-chr3-104792196-2	chr3	104791683	104792683	+	657.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007484, intron 2 of 4)	intron (NM_007484, intron 2 of 4)	3149.0	NM_001291859	11853.0	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	15.45	13.36	27.75	15.52	8.4	20.09	6.34	8.4	9.99
Merged-chr2-35984074-3	chr2	35983576	35984576	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4452.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	2.29	1.84	0.0	3.37	2.8	4.82	3.17	1.33	2.5
Merged-chr10-94312606-3	chr10	94312097	94313097	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	648.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	12.01	6.45	5.55	9.45	9.8	11.25	16.9	9.73	2.5
Merged-chr18-38025099-3	chr18	38024619	38025619	+	657.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26150.0	NM_001205336	106952.0	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	2.86	0.92	5.55	3.37	0.0	1.61	4.22	2.65	0.0
Merged-chr19-55741011-2	chr19	55740518	55741518	+	657.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001331147)	promoter-TSS (NM_001331147)	-792.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	122.99	102.29	132.27	123.47	82.11	121.37	122.52	146.8	107.42
Merged-chr2-38296108-2	chr2	38295617	38296617	+	657.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-8733.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	11.44	11.98	8.32	22.94	14.93	6.43	3.17	12.82	13.74
Merged-chr2-90539136-1	chr2	90538636	90539636	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	L2a|LINE|L2	41511.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	29.17	38.25	24.97	43.18	29.39	28.13	22.18	24.32	31.23
Merged-chr2-35437962-1	chr2	35437462	35438462	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	MIRb|SINE|MIR	23487.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	13.73	8.29	19.42	10.12	5.13	8.04	6.34	1.33	11.24
Merged-chr15-59643980-3	chr15	59643493	59644493	+	657.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4661.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	10.3	5.53	7.4	13.49	4.67	6.43	5.28	5.75	5.62
Merged-chr8-70762012-1	chr8	70761512	70762512	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023065)	TTS (NM_023065)	-1091.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	47.48	67.74	49.02	51.95	32.19	49.83	61.26	63.67	34.35
Merged-chr16-57538243-1	chr16	57537743	57538743	+	657.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-10999.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	33.75	32.72	16.65	24.29	22.39	19.29	14.79	9.73	11.24
Merged-chr8-125782615-2	chr8	125782124	125783124	+	657.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175561, intron 25 of 33)	intron (NM_175561, intron 25 of 33)	48421.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	5.15	3.69	7.4	2.7	2.33	1.61	8.45	4.86	3.75
Merged-chr11-30781067-2	chr11	30780563	30781563	+	657.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 1 of 46)	ID_B1|SINE|B4	9288.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	5.72	5.07	4.62	6.07	4.2	1.61	11.62	9.29	3.12
Merged-chr3-145758773-3	chr3	145758319	145759319	+	657.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026993, exon 1 of 6)	5' UTR (NM_026993, exon 1 of 6)	127.0	NM_026993	69219.0	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	5.15	2.3	6.47	3.37	6.06	4.82	6.34	2.65	2.5
Merged-chr5-68048965-3	chr5	68048473	68049473	+	657.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001018019, intron 1 of 3)	intron (NM_001018019, intron 1 of 3)	17138.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	5.72	3.69	1.85	5.4	2.33	1.61	5.28	4.42	5.0
Merged-chr11-32341320-3	chr11	32340881	32341881	+	657.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6430.0	NM_177364	268396.0	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	4.58	3.69	5.55	4.05	1.87	0.0	4.22	2.21	5.0
Merged-chr7-82868933-2	chr7	82868427	82869427	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175366, exon 2 of 2)	exon (NM_175366, exon 2 of 2)	1594.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.86	2.76	1.85	4.72	2.33	2.41	5.28	2.21	3.75
Merged-chrX-133927065-2	chrX	133926560	133927560	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083895, intron 6 of 10)	intron (NM_001083895, intron 6 of 10)	18635.0	NM_001083895	68792.0	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	5.72	3.23	0.0	0.67	4.67	2.41	0.0	2.65	2.5
Merged-chr4-132786231-1	chr4	132785731	132786731	+	657.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033308, exon 4 of 6)	exon (NM_001033308, exon 4 of 6)	10133.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	27.46	13.82	45.32	22.27	21.46	19.29	31.69	30.07	22.48
Merged-chr7-130816399-1	chr7	130815899	130816899	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081038, intron 11 of 15)	intron (NM_001081038, intron 11 of 15)	42330.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	8.01	11.52	22.2	12.82	11.2	11.25	14.79	4.86	8.74
Merged-chr3-105880460-1	chr3	105879960	105880960	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027025, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	9602.0	NM_001174169	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	44.62	54.83	65.67	49.25	32.66	59.48	68.65	50.85	50.59
Merged-chr7-66311423-1	chr7	66310923	66311923	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 6 of 33)	intron (NM_146191, intron 6 of 33)	70301.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	36.61	53.45	68.45	24.29	21.93	54.66	55.98	44.22	61.2
Merged-chr19-56776245-1	chr19	56775745	56776745	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37438.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	17.73	19.35	18.5	33.06	33.59	48.23	24.29	24.76	35.6
Merged-chr7-80787476-1	chr7	80786976	80787976	+	657.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	15855.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	48.05	39.17	39.77	57.35	48.05	49.83	69.71	60.58	43.72
Merged-chr4-74222540-2	chr4	74222028	74223028	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19969.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	2.86	3.69	3.7	2.7	1.4	0.0	2.11	3.1	3.12
Merged-chr15-99500391-2	chr15	99499889	99500889	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038658, intron 11 of 11)	intron (NM_001038658, intron 11 of 11)	-25659.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	8.58	3.23	9.25	5.4	1.87	2.41	9.51	2.65	5.62
Merged-chr16-26371859-1	chr16	26371359	26372359	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016674)	promoter-TSS (NM_016674)	-20.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	3.43	3.69	0.0	1.35	1.4	0.0	0.0	2.21	0.0
Merged-chr2-138274760-1	chr2	138274260	138275260	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	URR1B|DNA|hAT-Charlie	-3733.0	NM_145534	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	4.0	5.53	0.92	3.37	5.13	0.0	3.17	3.54	1.25
Merged-chr2-131178213-2	chr2	131177702	131178702	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_007682, exon 1 of 1)	exon (NM_007682, exon 1 of 1)	1865.0	NM_007682	12616.0	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	30.89	25.8	32.37	33.74	18.19	36.97	27.46	27.86	34.97
Merged-chr11-102295589-2	chr11	102295127	102296127	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001098836, intron 1 of 12)	intron (NM_001098836, intron 1 of 12)	1002.0	NM_001098836	217218.0	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	72.08	60.82	94.35	64.1	69.98	81.18	90.83	70.3	72.45
Merged-chr10-8070267-2	chr10	8069778	8070778	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-114155.0	NM_138667	68652.0	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	10.87	4.61	3.7	13.49	6.06	14.47	24.29	12.38	13.74
Merged-chr2-24927175-2	chr2	24926696	24927696	+	657.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178408, intron 2 of 7)	intron (NM_178408, intron 2 of 7)	-7587.0	NM_001109686	77683.0	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	5.72	7.37	12.95	10.8	13.53	24.11	9.51	3.1	12.49
Merged-chr12-102499761-1	chr12	102499261	102500261	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29851.0	NM_013747	27277.0	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	10.3	5.99	11.1	9.45	9.33	16.08	2.11	3.54	5.0
Merged-chr2-102451664-1	chr2	102451164	102452164	+	657.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010218, exon 1 of 1)	5' UTR (NM_010218, exon 1 of 1)	128.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	11.44	3.23	3.7	8.1	0.93	1.61	10.56	2.21	1.87
Merged-chr12-108636735-3	chr12	108636222	108637222	+	657.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	969.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	137.29	179.25	104.52	157.21	123.16	119.76	189.06	146.36	143.64
Merged-chr8-39655641-3	chr8	39655152	39656152	+	657.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-12974.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	4.0	2.76	0.0	4.72	1.4	5.63	9.51	3.1	14.99
Merged-chr1-107525795-2	chr1	107525296	107526296	+	657.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001174170)	TTS (NM_001174170)	-3207.0	NM_001160307	241197.0	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	6.29	8.29	0.0	6.07	3.73	2.41	4.22	1.33	7.49
Merged-chr4-6248029-2	chr4	6247589	6248589	+	657.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27542.0	NM_007824	13122.0	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	1.72	1.38	3.7	2.02	4.2	3.22	2.11	3.54	3.75
Merged-chr16-16599941-3	chr16	16599385	16600385	+	657.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301817)	promoter-TSS (NM_001301817)	93.0	NM_001301817	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	10.87	3.69	0.0	9.45	6.06	4.02	5.28	2.21	6.25
Merged-chr4-107313824-1	chr4	107313324	107314324	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145550)	promoter-TSS (NM_145550)	-539.0	NM_145550	230584.0	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	37.76	29.49	11.1	36.43	48.52	47.42	21.12	34.05	11.87
Merged-chr8-47867275-1	chr8	47866775	47867775	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	42793.0	NM_029383	75677.0	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	3.43	2.76	2.77	1.35	2.8	3.22	3.17	0.0	2.5
Merged-chr19-10101844-3	chr19	10101353	10102353	+	657.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019699)	promoter-TSS (NM_019699)	-350.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	5.72	0.92	0.0	1.35	0.47	4.02	4.22	0.44	4.37
Merged-chr3-144043347-3	chr3	144042856	144043856	+	657.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	158976.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.29	15.67	19.42	6.07	2.33	8.84	3.17	5.31	6.25
Merged-chr4-32170921-1	chr4	32170421	32171421	+	657.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	206814.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	2.29	7.83	9.25	6.75	10.26	8.04	15.84	15.48	14.99
Merged-chr4-48045959-3	chr4	48045472	48046472	+	657.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	667.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	25.74	20.27	11.1	29.01	15.39	14.47	34.85	15.92	21.23
Merged-chr10-20568486-2	chr10	20567983	20568983	+	657.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 2 of 12)	intron (NM_013875, intron 2 of 12)	-20155.0	NM_001347366	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	8.01	4.61	7.4	15.52	7.0	3.22	5.28	2.65	3.75
Merged-chr9-95693830-2	chr9	95693332	95694332	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029620, intron 7 of 8)	intron (NM_029620, intron 7 of 8)	56204.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	21.17	23.04	15.72	24.29	25.66	41.8	36.97	40.68	33.1
Merged-chr2-49420660-2	chr2	49420191	49421191	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30795.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	11.44	17.97	11.1	4.72	14.0	16.08	2.11	4.42	19.98
Merged-chr2-101905923-2	chr2	101905432	101906432	+	657.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19670.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.57	1.38	0.92	3.37	0.47	0.0	2.11	0.88	5.0
Merged-chr7-99090710-3	chr7	99090212	99091212	+	657.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	50432.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	81.23	64.97	35.15	67.47	42.92	50.64	65.48	67.21	26.85
Merged-chr4-132260545-2	chr4	132260066	132261066	+	657.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	983.0	NM_020273	56809.0	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	121.85	103.22	141.52	102.56	82.11	131.02	179.55	158.3	128.65
Merged-chrX-36751769-2	chrX	36751256	36752256	+	657.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_075097, intron 1 of 3)	ORR1B1|LTR|ERVL-MaLR	8124.0	NR_075096	194744.0	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	1.72	3.23	3.7	4.05	1.87	7.23	3.17	2.65	6.25
Merged-chr10-78351990-2	chr10	78351478	78352478	+	657.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_053014)	promoter-TSS (NM_053014)	-278.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	86.38	63.59	38.85	76.92	58.78	71.54	78.16	44.66	43.72
Merged-chr15-34428909-2	chr15	34428373	34429373	+	657.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358780, intron 14 of 18)	intron (NM_001358780, intron 14 of 18)	14352.0	NM_009083	19946.0	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	2.86	4.61	0.0	2.7	2.8	0.0	2.11	1.77	3.75
Merged-chr5-107944974-3	chr5	107944487	107945487	+	657.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	L1MD1|LINE|L1	42090.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	10.3	9.22	3.7	5.4	1.4	6.43	12.67	7.07	7.49
Merged-chr19-47408870-3	chr19	47408336	47409336	+	657.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 2 of 14)	intron (NM_008018, intron 2 of 14)	55575.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	13.16	8.29	7.4	18.22	11.66	6.43	11.62	4.86	3.75
Merged-chr6-38782885-3	chr6	38782398	38783398	+	657.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	54413.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	19.45	30.41	29.6	26.31	17.73	32.96	31.69	21.22	29.35
Merged-chr3-108880670-2	chr3	108880175	108881175	+	657.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177091, intron 4 of 12)	intron (NM_177091, intron 4 of 12)	9333.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	120.13	88.01	46.25	105.93	66.71	66.71	74.99	76.49	66.82
Merged-chr15-66568021-2	chr15	66567521	66568521	+	657.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6975.0	NM_172514	213068.0	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	6.29	1.38	3.7	6.07	7.93	6.43	6.34	0.88	0.0
Merged-chr17-71337767-3	chr17	71337268	71338268	+	657.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028023, intron 2 of 2)	MTC|LTR|ERVL-MaLR	4036.0	NR_028023	100043644.0	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	1.72	4.15	4.62	4.72	2.33	4.82	0.0	3.1	0.0
Merged-chr2-91975865-2	chr2	91975320	91976320	+	657.041626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-12257.0	NM_138306	104418.0	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	6.86	8.75	5.55	12.82	4.2	0.0	9.51	1.77	3.75
Merged-chr1-131482455-1	chr1	131481955	131482955	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	44906.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	13.16	14.75	16.65	16.87	14.0	22.51	15.84	18.57	16.24
Merged-chr17-67446961-1	chr17	67446461	67447461	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER104|DNA|TcMar-Tc2	-92470.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	6.29	2.3	5.55	6.75	6.06	7.23	5.28	3.98	5.0
Merged-chr7-102619792-1	chr7	102619292	102620292	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34B_MM|LTR|ERVK	-4805.0	NM_207621	233578.0	Mm.377251	NM_207621	ENSMUSG00000073972	Olfr553	MOR25-2	olfactory receptor 553	protein-coding	2.29	2.76	5.55	5.4	3.27	0.0	4.22	3.54	2.5
Merged-chr9-82973395-1	chr9	82972895	82973895	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081216, intron 4 of 39)	intron (NM_001081216, intron 4 of 39)	2094.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	24.03	27.65	21.27	20.92	19.59	17.68	42.25	38.03	14.36
Merged-chr8-125183673-1	chr8	125183173	125184173	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	129478.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.86	4.61	4.62	4.05	7.0	14.47	4.22	0.88	2.5
Merged-chr16-25053678-1	chr16	25053178	25054178	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-5961.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	65.21	47.92	52.72	68.15	48.05	68.32	64.43	39.8	48.09
Merged-chr2-104750768-1	chr2	104750268	104751268	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7967.0	NM_144804	211896.0	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	2.86	2.3	3.7	0.0	3.27	3.22	4.22	3.54	1.25
Merged-chr8-69973779-2	chr8	69973296	69974296	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286450, intron 1 of 12)	CpG	587.0	NM_001113346	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	49.77	30.87	27.75	37.11	41.99	50.64	22.18	23.43	16.24
Merged-chr10-127658322-1	chr10	127657822	127658822	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009284, intron 17 of 21)	intron (NM_009284, intron 17 of 21)	8381.0	NM_001122895	17937.0	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	7.44	0.46	7.4	4.05	1.4	12.86	3.17	4.42	5.62
Merged-chr2-32965703-1	chr2	32965203	32966203	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	2402.0	NR_002898	104367.0	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	29.75	52.53	23.12	54.65	39.65	48.23	57.03	51.29	11.24
Merged-chr9-114581566-1	chr9	114581066	114582066	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-17197.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	3.43	0.92	0.92	2.02	2.8	8.04	2.11	3.1	1.25
Merged-chr11-84918651-1	chr11	84918151	84919151	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2285.0	NM_001005223	448850.0	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|TRIP-3|Trip3	zinc finger, HIT type 3	protein-coding	2.29	4.15	11.1	4.05	4.67	6.43	9.51	1.77	1.87
Merged-chr17-57449713-1	chr17	57449213	57450213	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 16 of 22)	intron (NM_001355722, intron 16 of 22)	91027.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	9.15	7.37	5.55	6.75	8.86	7.23	9.51	4.86	7.49
Merged-chr16-70412464-1	chr16	70411964	70412964	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028803, intron 3 of 15)	Lx8|LINE|L1	98515.0	NM_028803	74185.0	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	5.72	2.76	3.7	6.07	2.33	2.41	2.11	4.86	2.5
Merged-chr5-77407767-1	chr5	77407267	77408267	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008048, exon 1 of 5)	exon (NM_008048, exon 1 of 5)	278.0	NM_001159518	29817.0	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	1.72	2.3	0.0	3.37	1.87	3.22	0.0	0.44	6.87
Merged-chr9-118862294-1	chr9	118861794	118862794	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-64242.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	10.3	2.76	11.1	7.42	0.47	7.23	4.22	2.21	16.24
Merged-chr2-102990051-1	chr2	102989551	102990551	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83462.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	33.18	25.8	17.57	49.25	43.39	65.91	38.02	46.87	39.35
Merged-chr8-120828436-1	chr8	120827936	120828936	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89797.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	5.72	1.38	3.7	3.37	3.73	0.8	4.22	3.1	1.25
Merged-chr17-5004593-1	chr17	5004093	5005093	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	9519.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	16.02	6.45	11.1	13.49	7.0	7.23	10.56	9.73	5.0
Merged-chr2-18773237-1	chr2	18772737	18773737	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12375.0	NR_126079	100041479.0	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	19.45	15.21	8.32	23.62	8.4	8.04	3.17	2.21	1.25
Merged-chr7-24467079-1	chr7	24466579	24467579	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011113, intron 3 of 6)	PB1D7|SINE|Alu	4596.0	NM_011113	18793.0	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	2.86	2.3	3.7	4.05	4.2	6.43	2.11	0.88	2.5
Merged-chr1-86389440-3	chr1	86388929	86389929	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001319227)	promoter-TSS (NM_001319227)	-68.0	NM_001319227	14767.0	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	3.43	1.84	0.0	6.07	2.8	3.22	8.45	1.33	2.5
Merged-chr2-51099444-2	chr2	51098945	51099945	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49666.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	6.29	4.15	0.92	2.02	2.8	1.61	2.11	2.21	5.0
Merged-chr14-121369345-1	chr14	121368845	121369845	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	MTEa|LTR|ERVL-MaLR	9885.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	2.86	3.23	9.25	6.75	4.2	3.22	9.51	3.1	5.0
Merged-chr2-35447657-1	chr2	35447157	35448157	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	13792.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	14.3	22.12	16.65	8.1	11.66	6.43	11.62	6.63	5.62
Merged-chr10-94476290-1	chr10	94475790	94476790	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-38567.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	25.17	21.2	22.2	38.46	18.66	25.72	27.46	23.88	32.48
Merged-chr4-135150624-3	chr4	135150123	135151123	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019732, intron 1 of 5)	intron (NM_019732, intron 1 of 5)	29978.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	3.43	3.23	0.92	2.7	2.8	6.43	1.06	2.21	0.0
Merged-chr2-126468025-1	chr2	126467525	126468525	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359975, intron 3 of 27)	intron (NM_001359975, intron 3 of 27)	23528.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	6.29	4.61	1.85	6.75	14.0	11.25	5.28	0.88	4.37
Merged-chr15-75715112-2	chr15	75714631	75715631	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008164)	TTS (NM_008164)	10843.0	NM_008164	14787.0	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	4.0	1.38	1.85	1.35	1.4	0.0	1.06	0.44	3.75
Merged-chr10-17406660-1	chr10	17406160	17407160	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-310878.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.58	15.21	22.2	9.45	12.6	20.09	10.56	14.15	19.36
Merged-chr17-5596702-2	chr17	5596210	5597210	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	104110.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	35.47	44.7	43.47	47.23	48.05	45.01	20.07	24.76	29.98
Merged-chr4-102688785-1	chr4	102688285	102689285	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71350.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	4.58	4.15	3.7	9.45	9.8	3.22	2.11	2.65	3.75
Merged-chr15-74596160-1	chr15	74595660	74596660	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40158.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	1.72	1.84	6.47	2.7	4.67	6.43	1.06	1.33	0.0
Merged-chr4-141016206-1	chr4	141015706	141016706	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008546)	TTS (NM_008546)	5569.0	NM_008546	17150.0	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	32.61	20.74	26.82	57.35	48.52	50.64	52.81	65.0	17.49
Merged-chr10-121266426-1	chr10	121265926	121266926	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44970.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	4.0	5.07	3.7	8.1	7.93	1.61	4.22	0.88	3.75
Merged-chr2-35164288-1	chr2	35163788	35164788	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 31 of 43)	intron (NM_012018, intron 31 of 43)	32054.0	NM_001290635	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	18.31	11.52	19.42	17.54	11.2	4.82	11.62	5.31	8.74
Merged-chr6-134566060-1	chr6	134565560	134566560	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	853.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	65.21	54.37	29.6	58.03	33.12	41.8	136.25	78.71	43.72
Merged-chr7-142381233-1	chr7	142380733	142381733	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009983, intron 4 of 8)	intron (NM_009983, intron 4 of 8)	6637.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	18.88	8.29	34.22	7.42	6.06	7.23	25.35	14.15	11.24
Merged-chr18-77792254-1	chr18	77791754	77792754	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2296.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	9.15	8.75	3.7	14.17	2.8	5.63	9.51	6.19	6.25
Merged-chr17-34316999-1	chr17	34316499	34317499	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_010382)	TTS (NM_010382)	-8676.0	NM_001033978	381091.0	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	10.87	5.53	11.1	4.72	1.87	6.43	6.34	6.19	14.99
Merged-chr8-122415756-1	chr8	122415256	122416256	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029993, intron 17 of 18)	B3|SINE|B2	-6264.0	NM_145834	234836.0	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	8.01	9.22	13.87	10.8	6.53	20.9	14.79	8.84	4.37
Merged-chrX-159968776-1	chrX	159968276	159969276	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 11 of 12)	intron (NM_001135728, intron 11 of 12)	-19657.0	NM_001163085	270672.0	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	2.29	2.3	5.55	5.4	0.93	2.41	3.17	0.44	5.0
Merged-chr7-80827862-1	chr7	80827362	80828362	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24531.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	14.3	17.51	0.0	20.24	12.13	6.43	16.9	9.29	9.37
Merged-chr11-78344195-2	chr11	78343664	78344664	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313985, intron 1 of 4)	intron (NM_001313985, intron 1 of 4)	669.0	NM_011676	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	24.03	34.56	27.75	26.31	25.19	28.13	36.97	33.16	27.48
Merged-chr9-40638607-1	chr9	40638107	40639107	+	657.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47357.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	18.31	26.26	22.2	22.94	41.52	16.88	89.78	79.59	20.61
Merged-chr8-68994569-1	chr8	68994069	68995069	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-94167.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	32.61	23.96	25.9	29.01	15.39	14.47	11.62	13.27	11.24
Merged-chr2-38602952-2	chr2	38602445	38603445	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011187, intron 6 of 7)	intron (NM_011187, intron 6 of 7)	40961.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	18.88	17.97	29.6	10.12	10.73	19.29	13.73	15.03	11.24
Merged-chr10-39170359-1	chr10	39169859	39170859	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6565.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	1.72	5.07	6.47	2.02	0.0	0.0	3.17	3.1	0.0
Merged-chr13-9171312-1	chr13	9170812	9171812	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001311117, exon 17 of 17)	3' UTR (NM_001311117, exon 17 of 17)	77431.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	7.44	5.53	7.4	6.75	2.8	1.61	4.22	2.21	9.99
Merged-chr10-96628588-1	chr10	96628088	96629088	+	657.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11587.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	1.14	4.15	5.55	2.7	2.33	5.63	3.17	2.21	1.25
Merged-chr13-70611217-1	chr13	70610717	70611717	+	657.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144837, intron 10 of 18)	intron (NM_144837, intron 10 of 18)	26417.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	3.43	1.84	3.7	6.07	1.4	12.86	4.22	2.21	2.5
Merged-chr3-41348897-2	chr3	41348406	41349406	+	656.958374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144293.0	NR_040385	78706.0	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	9.72	1.38	5.55	1.35	2.33	0.0	3.17	1.77	1.25
Merged-chr19-45016939-2	chr19	45016446	45017446	+	656.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145503, intron 1 of 4)	intron (NM_145503, intron 1 of 4)	-1189.0	NM_001130526	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	25.74	14.75	1.85	47.23	26.12	28.94	20.07	10.61	5.62
Merged-chr2-60269539-3	chr2	60269032	60270032	+	656.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025422, intron 2 of 4)	L2|LINE|L2	14952.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	14.3	5.07	7.4	8.77	8.86	15.27	5.28	4.86	14.36
Merged-chr9-14807446-2	chr9	14806931	14807931	+	656.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310728, intron 9 of 18)	MTC|LTR|ERVL-MaLR	22777.0	NM_018736	17535.0	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	1.14	5.53	6.47	2.7	1.87	10.45	7.39	9.29	12.49
Merged-chr13-95374146-2	chr13	95373629	95374629	+	656.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025630, intron 1 of 13)	intron (NM_025630, intron 1 of 13)	1228.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	10.87	6.91	10.17	12.82	9.33	4.82	23.24	21.22	1.25
Merged-chr11-116379763-3	chr11	116379263	116380263	+	656.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	33269.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	13.16	17.05	1.85	9.45	11.2	16.08	35.91	17.24	14.36
Merged-chr5-146785570-3	chr5	146785061	146786061	+	656.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	(GGA)n|Simple_repeat|Simple_repeat	9395.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	42.9	56.68	30.52	51.28	41.52	70.73	63.37	77.82	47.46
Merged-chr1-153847063-3	chr1	153846574	153847574	+	656.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2933.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	6.29	2.76	1.85	4.05	0.93	3.22	3.17	3.54	2.5
Merged-chr6-83634812-1	chr6	83634312	83635312	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21304.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	96.11	106.44	97.12	108.63	126.89	136.64	113.01	111.43	65.58
Merged-chr11-116808377-2	chr11	116807881	116808881	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347633, intron 4 of 4)	intron (NM_001347633, intron 4 of 4)	19665.0	NM_026280	67622.0	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	14.87	22.12	12.95	14.17	15.39	20.9	6.34	1.77	1.87
Merged-chr4-122808317-1	chr4	122807817	122808817	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-27910.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	11.44	1.84	1.85	6.75	5.13	6.43	7.39	3.54	0.0
Merged-chr6-82772944-2	chr6	82772453	82773453	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1501.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	96.68	140.54	101.74	129.55	164.21	135.04	217.57	187.04	121.16
Merged-chr8-85119716-1	chr8	85119216	85120216	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357366)	promoter-TSS (NM_001357366)	-25.0	NM_001357366	244556.0	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	7.44	4.61	3.7	23.62	19.59	16.08	13.73	9.29	16.24
Merged-chr3-59224933-2	chr3	59224442	59225442	+	656.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-14060.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	30.89	34.56	31.45	23.62	15.39	29.74	26.4	29.63	41.22
Merged-chr9-72030699-2	chr9	72030190	72031190	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	80511.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	1.72	15.67	3.7	9.45	8.86	8.84	9.51	9.29	3.75
Merged-chr10-19575481-1	chr10	19574981	19575981	+	656.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-16468.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	14.87	16.13	13.87	18.22	13.06	21.7	16.9	20.78	28.73
Merged-chr15-37786904-1	chr15	37786404	37787404	+	656.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359844, intron 1 of 7)	L1MB3|LINE|L1	5096.0	NM_001170866	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	4.0	5.99	3.7	1.35	2.8	6.43	1.06	3.54	7.49
Merged-chr6-49213942-3	chr6	49213442	49214442	+	656.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023670, intron 1 of 14)	CpG	1012.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	1.14	0.92	6.47	2.7	0.47	0.8	8.45	2.65	8.74
Merged-chr5-110100396-1	chr5	110099896	110100896	+	656.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001281812)	promoter-TSS (NM_001281812)	-163.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	5.15	2.76	6.47	2.02	0.93	1.61	7.39	1.33	0.62
Merged-chr8-115778635-2	chr8	115778138	115779138	+	656.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-71744.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.72	1.84	1.85	1.35	3.73	1.61	3.17	2.65	3.75
Merged-chr16-73098962-2	chr16	73098486	73099486	+	656.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	435837.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.57	3.23	0.0	2.02	1.4	0.0	2.11	3.1	1.25
Merged-chr12-59012722-4	chr12	59012273	59013273	+	656.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-618.0	NM_025656	66603.0	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem nuclear organelle associated protein 2	protein-coding	112.12	195.83	116.54	106.61	134.35	126.19	155.26	223.29	130.53
Merged-chr7-72303710-1	chr7	72303210	72304210	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024703, intron 1 of 22)	Arthur1C|DNA|hAT-Tip100	2885.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	8.58	7.37	5.55	6.75	7.93	4.82	2.11	0.44	0.62
Merged-chr7-19619679-1	chr7	19619179	19620179	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009046, exon 3 of 11)	exon (NM_009046, exon 3 of 11)	9759.0	NM_001290457	19698.0	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	9.15	3.23	7.4	12.82	3.73	16.08	5.28	3.98	4.37
Merged-chr16-31025140-1	chr16	31024640	31025640	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56292.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	14.87	11.98	5.55	14.84	10.73	16.88	9.51	6.19	8.12
Merged-chr2-101815734-1	chr2	101815234	101816234	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-18027.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.14	0.46	1.85	0.67	2.33	0.8	3.17	1.33	2.5
Merged-chr11-53809077-2	chr11	53808602	53809602	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	38629.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	25.74	25.8	28.67	17.54	11.2	22.51	40.14	28.3	24.36
Merged-chr1-173733322-1	chr1	173732822	173733822	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204910, intron 3 of 7)	RLTR44C|LTR|ERVK	8487.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	17.16	5.53	18.5	20.92	7.46	17.68	7.39	4.42	21.86
Merged-chr15-75910580-1	chr15	75910080	75911080	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178646, exon 1 of 1)	exon (NM_178646, exon 1 of 1)	845.0	NM_178646	105734.0	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	19.45	7.37	11.1	18.22	7.0	10.45	8.45	10.61	4.37
Merged-chr7-107665428-1	chr7	107664928	107665928	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357436)	promoter-TSS (NM_001357436)	-50.0	NM_001357437	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	14.87	3.23	7.4	11.47	5.6	13.66	8.45	3.54	3.75
Merged-chr6-135026391-1	chr6	135025891	135026891	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14779.0	NM_026360	67755.0	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	5.15	1.38	1.85	4.72	1.87	4.82	1.06	3.1	6.87
Merged-chr13-20798693-2	chr13	20798198	20799198	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_012054, intron 1 of 20)	intron (NM_012054, intron 1 of 20)	4585.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	29.75	37.32	24.05	26.31	25.19	20.09	67.6	76.94	41.22
Merged-chr9-116087305-1	chr9	116086805	116087805	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009371)	TTS (NM_009371)	88058.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.73	25.8	11.1	24.96	7.93	11.25	17.96	15.03	9.37
Merged-chrX-74121135-2	chrX	74120629	74121629	+	656.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-6337.0	NM_008106	14539.0	Mm.284825	NM_008106	ENSMUSG00000031394	Opn1mw	Gcp	opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	protein-coding	10.3	9.68	12.95	14.17	5.6	4.82	10.56	13.27	6.25
Merged-chr1-132130873-1	chr1	132130373	132131373	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008795, intron 1 of 15)	intron (NM_008795, intron 1 of 15)	8812.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	3.43	2.3	0.0	2.7	0.47	1.61	2.11	0.0	2.5
Merged-chr4-129346751-2	chr4	129346263	129347263	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025970, intron 6 of 6)	intron (NM_025970, intron 6 of 6)	10737.0	NM_025970	67106.0	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	15.45	22.12	33.3	35.09	23.79	20.09	28.52	36.26	21.86
Merged-chr18-62046065-1	chr18	62045565	62046565	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	92990.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	131.57	126.72	106.37	140.34	89.57	97.26	132.02	168.47	128.65
Merged-chr17-49436739-1	chr17	49436239	49437239	+	656.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020042, intron 3 of 10)	intron (NM_020042, intron 3 of 10)	8375.0	NM_020042	56738.0	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	2.29	7.83	10.17	9.45	4.2	6.43	3.17	4.42	3.75
Merged-chr15-85042707-3	chr15	85042221	85043221	+	656.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356616)	promoter-TSS (NM_001356616)	-21.0	NM_001356616	73225.0	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	9.72	13.82	14.8	16.19	10.73	17.68	10.56	15.03	9.99
Merged-chr2-30246718-3	chr2	30246211	30247211	+	656.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177725, intron 2 of 3)	intron (NM_177725, intron 2 of 3)	8942.0	NM_177725	241296.0	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	49.77	41.47	24.97	56.0	41.05	28.13	107.73	94.18	26.23
Merged-chr19-21564270-3	chr19	21563758	21564758	+	656.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	88533.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	6.86	4.61	3.7	7.42	2.33	0.0	1.06	0.44	2.5
Merged-chr6-120898329-2	chr6	120897823	120898823	+	656.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007544, intron 3 of 5)	intron (NM_007544, intron 3 of 5)	18501.0	NM_007544	12122.0	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	2.29	0.46	1.85	6.07	1.4	2.41	5.28	2.65	0.0
Merged-chr7-25711049-3	chr7	25710524	25711524	+	656.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028771)	TTS (NM_028771)	8029.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	50.91	44.7	37.92	46.56	49.92	71.54	50.7	29.63	43.72
Merged-chr6-30499222-1	chr6	30498722	30499722	+	656.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347087, intron 5 of 13)	intron (NM_001347087, intron 5 of 13)	10551.0	NM_001347087	72649.0	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	3.43	2.76	9.25	3.37	5.6	3.22	5.28	1.33	9.37
Merged-chr12-55474829-1	chr12	55474329	55475329	+	656.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17818.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	137.29	136.39	118.39	201.74	193.13	188.89	133.08	187.48	119.91
Merged-chr8-46210623-1	chr8	46210123	46211123	+	656.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007450, intron 1 of 3)	intron (NM_007450, intron 1 of 3)	439.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	57.78	29.49	36.07	68.82	37.32	22.51	38.02	22.99	15.61
Merged-chr5-134569413-3	chr5	134568915	134569915	+	656.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2661.0	NR_106087	102465708.0		NR_106087	ENSMUSG00000106323	Mir7228	mmu-mir-7228	microRNA 7228	ncRNA	13.73	17.05	63.82	12.82	15.86	14.47	12.67	11.5	20.61
Merged-chr13-22006524-2	chr13	22006028	22007028	+	656.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019429, intron 7 of 11)	intron (NM_019429, intron 7 of 11)	3213.0	NM_019429	54373.0	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	4.58	4.61	5.55	4.05	4.2	1.61	4.22	4.42	8.74
Merged-chr7-25720109-3	chr7	25719624	25720624	+	656.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1071.0	NM_028771	52132.0	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	48.62	33.18	37.0	43.18	39.19	47.42	54.92	66.77	45.59
Merged-chr8-56301966-2	chr8	56301465	56302465	+	656.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	intron (NM_008278, intron 3 of 6)	7413.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	81.23	92.62	50.87	68.15	51.78	63.5	59.15	74.28	60.58
Merged-chr11-69390606-3	chr11	69390086	69391086	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4760.0	NM_001045525	327951.0	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	8.01	5.53	0.0	4.05	1.4	1.61	1.06	1.77	1.25
Merged-chr16-20539824-3	chr16	20539334	20540334	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302970, intron 3 of 10)	intron (NM_001302970, intron 3 of 10)	4354.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	17.73	20.74	28.67	24.29	20.06	36.17	29.57	19.01	21.86
Merged-chr16-93906448-3	chr16	93905956	93906956	+	656.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_028083)	TTS (NM_028083)	22555.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	4.58	2.3	4.62	1.35	0.47	3.22	7.39	0.44	2.5
Merged-chr4-115000682-2	chr4	115000182	115001182	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001304551, intron 1 of 15)	intron (NM_001304551, intron 1 of 15)	564.0	NM_001304555	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	37.76	38.25	3.7	24.96	23.33	17.68	52.81	43.77	21.86
Merged-chr2-90746158-1	chr2	90745658	90746658	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_018828, intron 1 of 16)	intron (NM_018828, intron 1 of 16)	788.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	320.35	322.55	206.26	294.18	373.21	268.47	249.26	283.87	187.98
Merged-chr9-21425594-1	chr9	21425094	21426094	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	intron (NM_001357721, intron 1 of 19)	686.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	106.97	148.83	176.67	97.83	104.03	116.55	111.96	127.79	122.41
Merged-chr3-65387067-1	chr3	65386567	65387567	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026155, intron 3 of 4)	Lx9|LINE|L1	5486.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	10.87	6.45	12.95	8.1	7.93	20.09	7.39	7.07	7.49
Merged-chr13-64360439-1	chr13	64359939	64360939	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	10081.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	9.72	4.61	2.77	1.35	4.2	4.82	3.17	0.88	3.75
Merged-chr10-44527730-1	chr10	44527230	44528230	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68982.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	69.22	71.88	54.57	82.99	87.7	52.25	86.61	99.49	63.7
Merged-chr16-95648083-2	chr16	95647576	95648576	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54331.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.72	1.38	0.92	2.02	1.87	1.61	4.22	0.88	5.62
Merged-chr10-93271295-1	chr10	93270795	93271795	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	39864.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	8.01	10.6	5.55	7.42	12.6	21.7	2.11	3.1	3.75
Merged-chr12-8771238-1	chr12	8770738	8771738	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011519)	promoter-TSS (NM_011519)	-158.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	3.43	2.76	1.85	9.45	0.47	3.22	1.06	0.44	4.37
Merged-chr9-89264604-1	chr9	89264104	89265104	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	53220.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	32.04	32.25	18.5	27.66	18.19	28.13	15.84	24.76	16.24
Merged-chr8-88653517-2	chr8	88653008	88654008	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 2 of 12)	intron (NM_145857, intron 2 of 12)	6161.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	14.3	18.43	24.97	8.77	6.06	13.66	8.45	11.5	8.74
Merged-chr14-21662662-2	chr14	21662209	21663209	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 15 of 16)	intron (NM_017479, intron 15 of 16)	51867.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	5.15	9.22	8.32	7.42	5.13	9.65	7.39	7.52	5.62
Merged-chr2-163749242-1	chr2	163748742	163749742	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001272052, intron 1 of 11)	intron (NM_001272052, intron 1 of 11)	997.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	11.44	8.75	13.87	7.42	11.2	9.65	4.22	5.31	5.0
Merged-chrX-99199693-1	chrX	99199193	99200193	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63632.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	6.86	4.15	3.7	13.49	5.6	12.06	11.62	4.42	1.87
Merged-chr11-68897321-1	chr11	68896821	68897821	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4245.0	NM_009080	19941.0	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	4.0	2.76	5.55	3.37	3.73	1.61	2.11	0.44	1.25
Merged-chr13-97254963-2	chr13	97254508	97255508	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13903.0	NM_007930	13803.0	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	8.01	4.61	8.32	4.72	1.4	6.43	2.11	3.54	1.87
Merged-chr2-155101849-1	chr2	155101349	155102349	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1770.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	25.17	21.2	20.35	12.82	3.73	23.31	30.63	31.84	34.35
Merged-chr15-102978845-1	chr15	102978345	102979345	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008272, intron 1 of 2)	intron (NM_008272, intron 1 of 2)	1813.0	NM_008272	15427.0	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	5.72	0.46	1.85	2.02	1.4	4.02	2.11	0.0	2.5
Merged-chr7-19299847-1	chr7	19299347	19300347	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8778.0	NM_001025364	20167.0	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	5.72	2.3	2.77	3.37	0.47	3.22	1.06	1.33	2.5
Merged-chr7-130012267-1	chr7	130011767	130012767	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50102.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	4.0	1.38	0.0	2.7	1.87	3.22	4.22	2.65	3.75
Merged-chr2-125684075-1	chr2	125683575	125684575	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199022, intron 2 of 11)	intron (NM_199022, intron 2 of 11)	10975.0	NM_025613	58521.0	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	1.14	2.3	8.32	3.37	1.87	3.22	2.11	2.21	1.25
Merged-chr18-46468786-1	chr18	46468286	46469286	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	8.01	6.45	5.55	6.07	7.93	10.45	9.51	9.29	3.12
Merged-chr3-27667645-1	chr3	27667145	27668145	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	42807.0	NM_001356953	72007.0	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	10.87	10.6	7.4	11.47	7.0	19.29	14.79	9.73	15.61
Merged-chr3-84693036-1	chr3	84692536	84693536	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177260, intron 6 of 6)	intron (NM_177260, intron 6 of 6)	26844.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	6.86	0.46	0.0	4.05	5.6	0.0	6.34	1.33	1.25
Merged-chr1-132157529-2	chr1	132157043	132158043	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17858.0	NM_008795	18557.0	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	4.0	1.38	1.85	3.37	0.93	8.04	4.22	0.88	1.25
Merged-chr3-142398360-1	chr3	142397860	142398860	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-2664.0	NM_019808	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	4.58	3.69	8.32	2.7	3.27	0.0	6.34	3.98	1.25
Merged-chr7-132707921-1	chr7	132707421	132708421	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68995.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	16.02	11.98	25.9	12.82	16.33	26.53	5.28	7.07	8.12
Merged-chr9-66295132-1	chr9	66294632	66295632	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55318.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	9.15	3.23	3.7	4.72	5.13	9.65	8.45	3.54	8.74
Merged-chr7-30869342-1	chr7	30868842	30869842	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001043317, intron 11 of 15)	intron (NM_001043317, intron 11 of 15)	-7872.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	1.14	3.69	6.47	2.7	2.33	6.43	2.11	1.33	5.0
Merged-chr8-57746882-1	chr8	57746382	57747382	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-93827.0	NM_144731	108150.0	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	2.29	4.61	0.0	2.7	4.2	3.22	1.06	4.42	1.25
Merged-chr6-139882231-1	chr6	139881731	139882731	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207683, intron 25 of 31)	intron (NM_207683, intron 25 of 31)	40786.0	NM_011084	18705.0	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	2.29	1.38	0.92	4.05	1.4	0.0	5.28	3.1	7.49
Merged-chr4-81744670-1	chr4	81744170	81745170	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-257657.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	24.03	35.02	15.72	21.59	16.79	23.31	25.35	18.13	22.48
Merged-chr7-24237541-1	chr7	24237041	24238041	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020262)	promoter-TSS (NM_020262)	57.0	NM_020262	56869.0	Mm.103751	NM_020262	ENSMUSG00000074283	Zfp109	-	zinc finger protein 109	protein-coding	6.86	7.83	9.25	9.45	7.93	11.25	3.17	4.86	3.75
Merged-chr13-12647932-2	chr13	12647419	12648419	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003568, intron 1 of 6)	intron (NR_003568, intron 1 of 6)	2476.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	22.31	14.75	0.0	34.41	37.79	8.84	16.9	10.61	1.25
Merged-chr13-58589643-2	chr13	58589137	58590137	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022317, intron 1 of 17)	intron (NM_022317, intron 1 of 17)	21240.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	6.29	1.84	3.7	4.05	3.73	4.82	4.22	5.31	1.25
Merged-chr2-160358553-1	chr2	160358053	160359053	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8512.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.58	4.61	8.32	4.72	4.2	14.47	2.11	3.1	8.74
Merged-chr14-64654018-1	chr14	64653518	64654518	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 1 of 39)	intron (NM_001081177, intron 1 of 39)	1487.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	23.45	33.64	30.52	32.39	44.78	45.01	38.02	26.53	30.6
Merged-chr3-85592883-2	chr3	85592393	85593393	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	18764.0	NM_144896	229487.0	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	4.58	5.53	7.4	7.42	7.0	7.23	8.45	4.86	5.0
Merged-chr16-57914788-1	chr16	57914288	57915288	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-160051.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	2.86	1.38	3.7	3.37	0.93	1.61	5.28	0.88	3.75
Merged-chr2-14230035-1	chr2	14229535	14230535	+	656.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	621.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	118.42	180.17	86.02	126.85	137.15	98.06	177.44	214.01	87.43
Merged-chr5-129063558-1	chr5	129063058	129064058	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33192.0	NM_001081342	243277.0	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	1.72	0.92	3.7	2.02	1.4	1.61	1.06	0.44	0.0
Merged-chr18-53881179-1	chr18	53880679	53881679	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 1 of 12)	Tigger20a|DNA|TcMar-Tigger	19066.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.44	8.29	13.87	9.45	13.53	19.29	5.28	7.52	3.75
Merged-chr12-36051741-1	chr12	36051241	36052241	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9263.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	2.29	4.15	3.7	7.42	2.8	0.0	2.11	0.44	5.0
Merged-chr11-62560700-1	chr11	62560200	62561200	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	8969.0	NM_001313984	22187.0	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	2.86	3.69	7.4	14.17	13.53	6.43	7.39	4.42	3.75
Merged-chr6-16221381-1	chr6	16220881	16221881	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	500720.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.15	1.38	3.7	1.35	1.4	3.22	1.06	3.98	6.25
Merged-chr1-184771200-1	chr1	184770700	184771700	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38707.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	4.58	5.07	8.32	4.05	0.47	1.61	3.17	0.88	0.0
Merged-chr4-8838247-1	chr4	8837747	8838747	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355382, intron 14 of 36)	(TTTTG)n|Simple_repeat|Simple_repeat	86923.0	NM_001355382	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	88.1	111.97	89.72	71.52	60.18	80.38	152.09	182.17	101.17
Merged-chr1-71723173-1	chr1	71722673	71723673	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69838.0	NR_040308	100042814.0	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	Gm15456	apolipoprotein L 7d	ncRNA	2.29	1.38	0.0	8.1	0.93	3.22	3.17	2.21	3.75
Merged-chr4-141790022-1	chr4	141789522	141790522	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172338, intron 1 of 14)	intron (NM_172338, intron 1 of 14)	622.0	NM_172338	214063.0	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	116.7	74.19	105.44	106.61	103.1	105.3	101.39	124.25	61.2
Merged-chr2-29820665-1	chr2	29820165	29821165	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6724.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	14.3	15.21	18.5	16.19	13.53	16.88	22.18	30.07	22.48
Merged-chr11-3163476-1	chr11	3162976	3163976	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030207, intron 9 of 32)	B1_Mus1|SINE|Alu	29987.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	69.22	82.02	118.39	94.46	103.1	155.13	4.22	5.75	118.66
Merged-chr10-87020931-2	chr10	87020418	87021418	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12976.0	NM_138673	192188.0	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	4.58	5.53	1.85	4.05	1.87	3.22	3.17	3.54	3.75
Merged-chr4-130660127-2	chr4	130659636	130660636	+	656.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3185.0	NM_030722	80912.0	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	8.01	7.83	8.32	10.12	3.73	8.04	1.06	4.42	8.74
Merged-chr2-174344856-1	chr2	174344356	174345356	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077507, intron 5 of 10)	intron (NM_001077507, intron 5 of 10)	14767.0	NM_001077510	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	48.62	56.22	34.22	73.54	52.25	61.09	43.3	57.04	46.84
Merged-chr5-65389869-1	chr5	65389369	65390369	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011292, intron 4 of 7)	intron (NM_011292, intron 4 of 7)	1562.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	24.03	29.95	29.6	37.11	20.06	22.51	24.29	22.55	17.49
Merged-chr5-32464856-1	chr5	32464356	32465356	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172707, intron 1 of 7)	intron (NM_172707, intron 1 of 7)	5886.0	NM_172707	19046.0	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	14.3	9.68	14.8	9.45	8.86	12.06	7.39	11.94	8.74
Merged-chr18-11195228-1	chr18	11194728	11195728	+	656.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-142661.0	NR_105022	68434.0	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	4.58	2.76	3.7	3.37	2.8	2.41	0.0	0.44	2.5
Merged-chr5-122061070-2	chr5	122060570	122061570	+	655.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11219.0	NM_001312908	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	4.58	6.45	7.4	6.75	1.87	10.45	8.45	3.98	6.87
Merged-chr4-45015806-2	chr4	45015323	45016323	+	655.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2786.0	NM_022811	64424.0	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	10.87	6.45	1.85	2.02	3.73	0.0	4.22	4.86	1.25
Merged-chr8-14931568-1	chr8	14931068	14932068	+	655.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 4 of 27)	intron (NM_001037736, intron 4 of 27)	19905.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.57	2.3	3.7	4.72	2.8	4.02	1.06	0.44	1.25
Merged-chr11-20332168-2	chr11	20331637	20332637	+	655.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018861, exon 1 of 8)	exon (NM_018861, exon 1 of 8)	576.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	14.3	8.75	0.0	12.82	11.66	9.65	21.12	12.82	5.0
Merged-chr8-70775803-4	chr8	70775381	70776381	+	655.716675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029440)	promoter-TSS (NR_029440)	831.0	NM_008841	18709.0	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphoinositide-3-kinase regulatory subunit 2	protein-coding	46.34	37.78	29.6	41.16	20.53	27.33	42.25	30.07	27.48
Merged-chr8-36097104-1	chr8	36096604	36097604	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	2276.0	NM_172911	244418.0	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.0	3.23	9.25	3.37	1.4	0.8	3.17	2.65	6.25
Merged-chr9-116338562-1	chr9	116338062	116339062	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	149382.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	2.29	2.76	1.85	7.42	3.27	0.0	4.22	4.42	5.0
Merged-chr17-47499156-3	chr17	47498645	47499645	+	655.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356290, intron 2 of 7)	RMER6A|LTR|ERVK	3146.0	NM_001356290	63856.0	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	9.15	8.75	11.1	12.82	7.93	21.7	8.45	7.52	11.24
Merged-chr19-23057486-1	chr19	23056986	23057986	+	655.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83740.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	21.17	22.58	16.65	51.28	59.25	69.93	72.88	69.42	53.71
Merged-chr11-95047160-2	chr11	95046662	95047662	+	655.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001306071, intron 22 of 24)	intron (NM_001306071, intron 22 of 24)	-5791.0	NM_133667	18604.0	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	5.15	2.3	1.85	0.0	1.87	0.0	2.11	1.77	3.75
Merged-chr6-134862988-3	chr6	134862478	134863478	+	655.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	24807.0	NR_074084	14760.0	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	11.44	9.22	12.02	8.77	5.6	6.43	4.22	7.52	7.49
Merged-chr6-39381313-2	chr6	39380804	39381804	+	655.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011226)	promoter-TSS (NM_011226)	-49.0	NM_011226	19331.0	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	63.5	70.04	43.47	35.76	41.99	29.74	45.42	61.02	39.35
Merged-chr7-15974876-2	chr7	15974384	15975384	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081418, intron 13 of 13)	intron (NM_001081418, intron 13 of 13)	-7349.0	NM_153068	259300.0	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	1.72	1.84	5.55	7.42	2.8	4.02	1.06	1.33	0.0
Merged-chr9-119436036-1	chr9	119435536	119436536	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001313757, exon 11 of 11)	3' UTR (NM_001313757, exon 11 of 11)	-8924.0	NR_153320	208194.0	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	6.29	7.37	1.85	4.72	3.73	5.63	8.45	3.1	1.25
Merged-chr8-10602595-2	chr8	10602106	10603106	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319151, intron 33 of 34)	ORR1E|LTR|ERVL-MaLR	279848.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	4.0	2.76	3.7	6.07	0.93	0.0	2.11	1.77	5.62
Merged-chr11-58954055-2	chr11	58953548	58954548	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178218)	promoter-TSS (NM_178218)	464.0	NR_134309	382522.0	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	17.73	29.49	12.02	22.27	23.79	16.88	109.84	158.74	50.59
Merged-chr3-104715208-2	chr3	104714701	104715701	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	62346.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	2.29	1.38	1.85	6.07	4.67	3.22	0.0	0.88	4.37
Merged-chr5-99340632-1	chr5	99340132	99341132	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-87705.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	206.51	278.31	211.81	226.71	234.19	251.59	288.34	383.8	163.63
Merged-chr17-7863942-1	chr17	7863442	7864442	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58968.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	6.29	2.76	7.4	4.72	0.93	0.0	5.28	0.44	2.5
Merged-chr4-58535976-1	chr4	58535476	58536476	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	17317.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	5.15	5.53	0.0	2.02	2.8	11.25	5.28	7.52	11.87
Merged-chr16-28593333-1	chr16	28592833	28593833	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	6710.0	NR_030463	751543.0		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.0	2.3	0.92	2.02	2.33	6.43	3.17	1.33	2.5
Merged-chr17-29986762-3	chr17	29986263	29987263	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18276.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	12.01	7.37	20.35	9.45	7.0	20.9	21.12	6.63	7.49
Merged-chr19-12483803-1	chr19	12483303	12484303	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172442, intron 4 of 8)	intron (NM_172442, intron 4 of 8)	18193.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	10.3	9.68	5.55	19.57	8.4	22.51	9.51	9.73	7.49
Merged-chr17-51099885-1	chr17	51099385	51100385	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	59493.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	6.29	8.75	9.25	8.77	11.66	14.47	15.84	20.78	6.25
Merged-chr7-101454775-1	chr7	101454275	101455275	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	-1287.0	NR_152194	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	9.72	5.99	12.95	23.62	7.0	9.65	0.0	2.21	5.0
Merged-chr16-52062110-2	chr16	52061621	52062621	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	30572.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	96.68	93.08	61.05	86.36	78.37	49.83	52.81	85.34	43.72
Merged-chr17-29432814-1	chr17	29432314	29433314	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-58231.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	269.44	250.67	143.37	112.68	67.64	45.82	203.84	197.65	102.42
Merged-chr5-148790600-2	chr5	148790105	148791105	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	12642.0	NR_131106	78015.0	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	2.29	2.3	2.77	1.35	2.8	1.61	3.17	2.65	7.49
Merged-chr4-46202387-2	chr4	46201918	46202918	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6107.0	NM_011728	22590.0	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	4.0	3.23	0.0	0.67	3.73	4.02	3.17	1.77	5.0
Merged-chr14-120280318-3	chr14	120279840	120280840	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	4671.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	25.17	18.89	6.47	25.64	9.8	17.68	12.67	10.61	8.74
Merged-chr11-74497496-2	chr11	74496998	74497998	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	92660.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	18.31	24.88	33.3	39.81	23.33	36.97	55.98	33.16	26.85
Merged-chr5-121389907-1	chr5	121389407	121390407	+	655.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4292.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	79.52	70.04	61.97	58.7	54.11	86.81	105.62	127.34	84.31
Merged-chr12-32964027-2	chr12	32963551	32964551	+	655.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198710, intron 1 of 4)	intron (NM_198710, intron 1 of 4)	9865.0	NM_198710	19027.0	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	11.44	13.82	12.02	21.59	11.66	10.45	5.28	8.84	7.49
Merged-chr10-68396986-1	chr10	68396486	68397486	+	655.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75844.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	2.86	3.69	4.62	6.07	6.06	1.61	7.39	7.07	1.25
Merged-chr16-31506897-2	chr16	31506380	31507380	+	655.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77104.0	NR_152205	100047123.0	Mm.466711	NR_152205		Gm15743	-	predicted gene 15743	ncRNA	10.87	7.37	36.07	12.14	17.73	14.47	8.45	5.75	10.62
Merged-chr2-181072320-3	chr2	181071815	181072815	+	655.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33138.0	NM_015730	11438.0	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	2.86	3.23	3.7	0.67	0.0	6.43	3.17	4.42	1.25
Merged-chr7-129649128-2	chr7	129648632	129649632	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57269.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.43	3.69	5.55	2.7	1.87	1.61	1.06	1.33	5.62
Merged-chr2-102829338-2	chr2	102828821	102829821	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039151, intron 5 of 8)	MERVL-int|LTR|ERVL	72344.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	9.72	14.28	10.17	8.1	7.0	10.45	7.39	4.86	8.12
Merged-chr12-108338759-2	chr12	108338267	108339267	+	655.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010010, intron 1 of 14)	intron (NM_010010, intron 1 of 14)	4451.0	NM_010010	13116.0	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	CH24H|Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.57	0.46	0.0	2.02	0.47	1.61	4.22	1.77	4.37
Merged-chr4-136016046-1	chr4	136015546	136016546	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013736, intron 1 of 10)	intron (NM_013736, intron 1 of 10)	5603.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	16.59	14.28	13.87	16.19	10.73	22.51	30.63	21.22	11.24
Merged-chr2-159911884-1	chr2	159911384	159912384	+	655.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-35457.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	19.45	20.74	33.3	18.22	19.59	22.51	19.01	15.48	14.99
Merged-chr15-6708890-1	chr15	6708390	6709390	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030168, intron 2 of 37)	CpG-4767	509.0	NM_030168	78757.0	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	62.35	54.37	65.67	76.92	62.98	46.62	72.88	37.58	28.1
Merged-chr6-38532548-1	chr6	38532048	38533048	+	655.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-2313.0	NM_025363	66117.0	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	90.96	146.99	109.14	96.48	91.9	82.79	117.24	146.8	77.44
Merged-chr13-30788612-2	chr13	30788120	30789120	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	39387.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	1.72	4.15	8.32	7.42	3.73	2.41	5.28	2.21	2.5
Merged-chr2-25396281-2	chr2	25395780	25396780	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009849, intron 1 of 8)	CpG	406.0	NM_009849	12496.0	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	6.29	1.84	7.4	4.72	2.8	0.0	2.11	1.77	6.25
Merged-chr16-38619241-2	chr16	38618740	38619740	+	655.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 7 of 11)	intron (NM_020260, intron 7 of 11)	56426.0	NM_026407	67846.0	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	2.29	0.92	1.85	2.02	3.73	0.0	4.22	3.54	0.0
Merged-chr18-33214819-2	chr18	33214304	33215304	+	655.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133774)	promoter-TSS (NM_133774)	-942.0	NM_001347624	170459.0	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	24.6	43.31	36.07	43.18	53.18	23.31	27.46	19.9	8.74
Merged-chr6-119401736-3	chr6	119401240	119402240	+	655.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197985, intron 1 of 7)	MTD|LTR|ERVL-MaLR	-13006.0	NM_001355692	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.0	3.23	5.55	3.37	3.73	4.82	5.28	1.77	2.5
Merged-chr1-36580866-2	chr1	36580375	36581375	+	655.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001126046, intron 11 of 14)	intron (NM_001126046, intron 11 of 14)	12457.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	30.32	23.5	41.62	39.81	27.52	51.44	57.03	48.2	39.97
Merged-chr9-44318568-2	chr9	44318098	44319098	+	655.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359259, intron 1 of 13)	intron (NM_001359259, intron 1 of 13)	1684.0	NM_001359259	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	31.46	23.96	47.17	28.34	36.39	38.58	34.85	38.03	41.22
Merged-chr4-133085432-3	chr4	133084909	133085909	+	655.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45224.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	8.01	1.84	3.7	7.42	1.87	10.45	1.06	1.77	2.5
Merged-chr10-100016614-2	chr10	100016121	100017121	+	655.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	CpG	800.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	16.02	24.88	22.2	29.01	18.66	15.27	15.84	19.01	16.86
Merged-chr2-102659039-1	chr2	102658539	102659539	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001361018, exon 1 of 10)	5' UTR (NM_001361018, exon 1 of 10)	350.0	NM_001361018	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	1.72	0.0	4.62	2.7	1.87	1.61	2.11	0.0	3.75
Merged-chrX-140493834-1	chrX	140493334	140494334	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	37231.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	3.43	6.91	11.1	8.77	9.8	11.25	8.45	4.86	7.49
Merged-chrX-103566606-1	chrX	103566106	103567106	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028381, intron 9 of 10)	L1M3e|LINE|L1	6390.0	NR_030558	100124494.0		NR_030558	ENSMUSG00000065509	Mir421	Mirn421|mmu-mir-421	microRNA 421	ncRNA	8.58	7.83	1.85	9.45	13.06	13.66	9.51	7.07	8.74
Merged-chr17-43578738-1	chr17	43578238	43579238	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013737, intron 1 of 11)	intron (NM_013737, intron 1 of 11)	10287.0	NM_013737	27226.0	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	28.6	17.51	22.2	26.31	14.0	42.6	22.18	6.63	14.99
Merged-chr1-195232797-1	chr1	195232297	195233297	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56082.0	NM_007758	12902.0	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	4.58	4.15	2.77	6.75	5.13	0.8	5.28	1.77	1.25
Merged-chr16-55802649-1	chr16	55802149	55803149	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19489.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	34.9	54.37	48.1	58.03	44.32	54.66	39.08	48.64	29.98
Merged-chr11-86756709-1	chr11	86756209	86757209	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	858.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	315.2	333.61	248.81	351.53	295.3	213.81	415.08	445.26	207.34
Merged-chr11-116427655-1	chr11	116427155	116428155	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-6439.0	NM_176902	319370.0	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	34.32	29.03	36.07	29.69	15.39	28.13	39.08	22.99	28.1
Merged-chr1-36086795-1	chr1	36086295	36087295	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015818, intron 1 of 1)	ORR1B1|LTR|ERVL-MaLR	18395.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	20.59	11.98	6.47	41.83	45.72	38.58	29.57	34.93	28.1
Merged-chrX-109098484-1	chrX	109097984	109098984	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	3077.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	15.45	27.19	24.05	28.34	14.0	20.9	24.29	26.97	14.99
Merged-chr6-143221296-1	chr6	143220796	143221796	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24592.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	25.74	28.57	14.8	35.09	25.19	27.33	28.52	26.97	6.25
Merged-chr2-38207971-1	chr2	38207471	38208471	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	B1F|SINE|Alu	79413.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.58	9.68	5.55	2.02	9.8	4.82	6.34	6.19	12.49
Merged-chr16-11133675-1	chr16	11133175	11134175	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029582, intron 1 of 11)	L2a|LINE|L2	857.0	NM_029582	106200.0	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	89.81	103.22	58.27	92.44	69.98	68.32	81.33	80.03	58.71
Merged-chr4-3664659-1	chr4	3664159	3665159	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8153.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	4.58	5.99	1.85	6.75	3.73	3.22	3.17	6.63	4.37
Merged-chr5-140752820-1	chr5	140752320	140753320	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173405, exon 8 of 8)	3' UTR (NM_173405, exon 8 of 8)	28693.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	2.86	2.3	10.17	8.77	6.53	1.61	0.0	0.0	5.0
Merged-chr19-32762065-1	chr19	32761565	32762565	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	4488.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	124.71	180.17	49.95	107.95	136.69	57.07	166.88	218.43	92.43
Merged-chr13-45915174-1	chr13	45914674	45915674	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	49817.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	4.0	4.15	5.55	10.12	2.8	4.82	3.17	3.54	5.0
Merged-chr7-12943686-1	chr7	12943186	12944186	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16270.0	NM_029809	381845.0	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	2.29	2.3	3.7	4.05	4.67	9.65	1.06	2.65	2.5
Merged-chr7-34378754-1	chr7	34378254	34379254	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	10951.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	14.3	16.13	21.27	13.49	10.26	25.72	20.07	14.59	7.49
Merged-chr16-59627132-1	chr16	59626632	59627632	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019665, intron 2 of 7)	intron (NM_019665, intron 2 of 7)	-9813.0	NR_040564	75145.0	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	8.01	7.83	1.85	11.47	7.93	4.82	5.28	5.75	1.87
Merged-chr5-145200588-1	chr5	145200088	145201088	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023322, intron 1 of 2)	B3A|SINE|B2	1294.0	NM_023322	67235.0	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	47.48	47.46	18.5	47.23	34.99	29.74	51.75	53.94	25.61
Merged-chr13-48655829-2	chr13	48655318	48656318	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7218.0	NM_007526	12022.0	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	1.14	2.76	1.85	2.02	1.4	3.22	3.17	1.33	1.87
Merged-chr13-67109064-1	chr13	67108564	67109564	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001256052, intron 2 of 6)	intron (NM_001256052, intron 2 of 6)	4964.0	NM_001256052	432770.0	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	70.36	67.27	41.62	51.28	68.58	82.79	59.15	40.24	24.98
Merged-chr17-46754362-1	chr17	46753862	46754862	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-2148.0	NM_001305988	72029.0	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	6.86	3.23	3.7	6.07	6.06	8.04	2.11	3.1	6.25
Merged-chr9-32487614-1	chr9	32487114	32488114	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	53838.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	20.02	13.82	23.12	10.12	8.86	19.29	25.35	7.07	7.49
Merged-chr11-98942950-1	chr11	98942450	98943450	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	3239.0	NM_001177303	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	149.88	119.34	86.95	136.29	74.64	79.58	114.07	74.73	59.33
Merged-chr8-14095669-1	chr8	14095169	14096169	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145965)	promoter-TSS (NM_001145965)	-206.0	NM_001145965	244310.0	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	DLG associated protein 2	protein-coding	1.14	2.3	4.62	0.0	0.0	0.0	1.06	2.65	0.0
Merged-chr3-31062699-2	chr3	31062145	31063145	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23679.0	NR_105975	102465610.0		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	31.46	18.89	14.8	16.19	15.86	13.66	22.18	26.53	13.74
Merged-chr8-126915225-1	chr8	126914725	126915725	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30696.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	5.72	4.61	3.7	8.77	1.87	4.02	4.22	2.65	7.49
Merged-chr16-91884347-2	chr16	91883861	91884861	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	47269.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	4.0	3.69	0.92	9.45	1.87	8.04	3.17	0.0	1.25
Merged-chr1-106351241-1	chr1	106350741	106351741	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 10 of 16)	MTE2a|LTR|ERVL-MaLR	179372.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	7.44	3.23	5.55	6.07	3.27	8.04	5.28	4.42	2.5
Merged-chr7-43926181-1	chr7	43925681	43926681	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7590.0	NM_174865	317652.0	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	5.72	3.23	0.0	3.37	0.47	3.22	4.22	2.21	1.87
Merged-chr14-55768020-1	chr14	55767520	55768520	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008519, exon 2 of 2)	exon (NM_008519, exon 2 of 2)	2058.0	NM_008519	16995.0	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	7.44	0.0	3.7	9.45	1.87	11.25	3.17	1.77	6.87
Merged-chr6-67266303-1	chr6	67265803	67266803	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025814)	promoter-TSS (NM_025814)	-676.0	NM_001113566	66870.0	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	16.59	22.58	9.25	24.96	22.86	24.92	27.46	15.48	25.61
Merged-chr1-170286179-1	chr1	170285679	170286679	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153837, exon 3 of 3)	non-coding (NR_153837, exon 3 of 3)	8861.0	NR_153837	26904.0	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	3.43	5.07	0.0	3.37	0.93	1.61	5.28	6.63	6.87
Merged-chr17-7176660-1	chr17	7176160	7177160	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	6545.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	1.14	4.15	1.85	2.02	2.8	4.02	3.17	0.44	3.75
Merged-chr1-64875894-1	chr1	64875394	64876394	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	L2a|LINE|L2	80930.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	60.64	76.03	57.35	56.0	87.24	73.14	53.87	62.35	33.72
Merged-chr8-85517111-1	chr8	85516611	85517611	+	655.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24494.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	6.29	2.76	7.4	4.72	5.13	1.61	28.52	25.65	14.99
Merged-chr15-12085100-1	chr15	12084600	12085600	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32751.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	5.15	0.92	1.85	6.07	2.8	1.61	0.0	1.33	5.0
Merged-chr4-103358404-1	chr4	103357904	103358904	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025909, intron 8 of 8)	intron (NM_025909, intron 8 of 8)	-24096.0	NR_040673	622167.0	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	-	predicted gene 12718	ncRNA	20.02	27.19	31.45	13.49	24.26	8.84	17.96	9.73	17.49
Merged-chr16-94332029-1	chr16	94331529	94332529	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133229, intron 2 of 3)	intron (NM_133229, intron 2 of 3)	3607.0	NM_133229	170765.0	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	4.0	2.76	0.0	2.02	4.67	8.04	1.06	1.77	3.75
Merged-chr3-51427954-2	chr3	51427457	51428457	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053089, intron 1 of 19)	intron (NM_053089, intron 1 of 19)	11941.0	NM_053089	74838.0	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	46.34	49.76	61.05	41.83	42.92	40.99	54.92	44.22	42.47
Merged-chr5-54038818-2	chr5	54038304	54039304	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	40281.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	5.15	5.53	1.85	5.4	3.27	8.04	5.28	4.42	1.25
Merged-chr4-99386939-1	chr4	99386439	99387439	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	192792.0	NM_001145967	242557.0	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	1.72	2.76	0.92	2.02	3.27	0.0	2.11	3.1	15.61
Merged-chr1-174487927-1	chr1	174487427	174488427	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-13898.0	NM_019445	54418.0	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	4.58	1.84	0.0	5.4	6.53	4.82	2.11	2.21	0.0
Merged-chr2-127003394-1	chr2	127002894	127003894	+	655.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5317.0	NM_175550	108011.0	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	17.16	10.6	13.87	17.54	9.33	24.92	6.34	3.98	5.62
Merged-chr10-57755418-1	chr10	57754918	57755918	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29505.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	13.16	16.13	6.47	16.87	12.13	12.06	14.79	12.38	5.62
Merged-chr2-122739309-1	chr2	122738809	122739809	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019788, intron 1 of 4)	intron (NM_019788, intron 1 of 4)	804.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	141.3	170.49	98.97	126.17	125.49	114.14	94.0	126.9	69.95
Merged-chr18-4355981-1	chr18	4355481	4356481	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	ORR1B1|LTR|ERVL-MaLR	2434.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	50.34	73.73	57.35	66.12	69.51	98.87	79.21	83.57	63.7
Merged-chr19-45944507-1	chr19	45944007	45945007	+	655.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198296, intron 15 of 25)	Lx8|LINE|L1	-53630.0	NR_152221	100174921.0	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	9.15	7.83	14.8	15.52	7.93	21.7	9.51	13.27	11.24
Merged-chr5-115326543-3	chr5	115326084	115327084	+	654.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025573)	promoter-TSS (NM_025573)	-593.0	NM_025573	108014.0	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	36.61	36.86	37.92	33.06	25.19	42.6	26.4	26.97	17.49
Merged-chr16-91880095-3	chr16	91879620	91880620	+	654.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	51510.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	129.86	105.52	38.85	141.69	91.9	111.73	126.74	121.6	73.69
Merged-chr2-129408655-2	chr2	129408143	129409143	+	654.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37504.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	12.01	7.83	5.55	12.82	10.73	12.86	10.56	6.63	6.25
Merged-chr4-129960348-3	chr4	129959793	129960793	+	654.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040647)	promoter-TSS (NR_040647)	-81.0	NR_040647	72225.0	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	5.72	3.69	0.0	4.05	1.4	5.63	2.11	2.65	2.5
Merged-chr7-27493214-3	chr7	27492719	27493719	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6105.0	NM_198048	19153.0	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	7.44	6.91	12.95	5.4	5.13	6.43	7.39	5.31	9.37
Merged-chr16-14361009-3	chr16	14360520	14361520	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	-538.0	NM_008576	17250.0	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	94.96	106.44	91.57	78.27	97.03	62.7	115.12	118.94	51.21
Merged-chr13-20220576-3	chr13	20220085	20221085	+	654.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	130078.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	6.29	4.15	7.4	9.45	3.73	3.22	19.01	10.17	17.49
Merged-chr11-72694145-2	chr11	72693662	72694662	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009671, intron 1 of 24)	ORR1C2|LTR|ERVL-MaLR	4160.0	NM_009671	11736.0	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	22.31	23.5	34.22	14.84	18.66	24.11	21.12	20.78	23.11
Merged-chr17-46384429-2	chr17	46383935	46384935	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021346, intron 1 of 7)	CpG	669.0	NM_021346	57908.0	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	72.65	33.18	26.82	78.94	33.12	40.99	104.56	48.2	44.97
Merged-chr7-19590076-3	chr7	19589562	19590562	+	654.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_125836, intron 6 of 17)	intron (NR_125836, intron 6 of 17)	12775.0	NM_022409	63872.0	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	10.3	8.29	11.1	7.42	3.73	4.02	6.34	6.19	3.75
Merged-chr4-53027305-2	chr4	53026781	53027781	+	654.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	15401.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	3.43	5.99	7.4	2.02	3.73	5.63	2.11	0.44	0.62
Merged-chr18-12808912-3	chr18	12808402	12809402	+	654.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252490, intron 3 of 13)	intron (NM_001252490, intron 3 of 13)	11005.0	NR_045524	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	4.58	17.51	1.85	16.19	14.0	18.49	10.56	5.31	8.74
Merged-chr8-79679194-3	chr8	79678694	79679694	+	654.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32546.0	NM_015751	24015.0	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	6.86	7.83	3.7	9.45	5.6	9.65	10.56	7.52	13.12
Merged-chr3-97297342-2	chr3	97296833	97297833	+	654.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69969.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	45.19	40.55	24.97	27.66	20.99	45.01	38.02	32.28	14.36
Merged-chrX-71283659-1	chrX	71283159	71284159	+	654.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 6 of 15)	L2|LINE|L2	68585.0	NM_001358113	17772.0	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	29.75	36.86	22.2	28.34	20.53	31.35	26.4	26.09	24.36
Merged-chr14-102806060-1	chr14	102805560	102806560	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	176572.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	102.4	98.15	63.82	80.97	68.11	72.34	111.96	85.78	86.18
Merged-chr13-21786834-1	chr13	21786334	21787334	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178202)	promoter-TSS (NM_178202)	384.0	NM_178184	319170.0		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	80.66	101.83	84.17	82.99	94.23	94.04	103.51	138.84	65.58
Merged-chr6-116007900-1	chr6	116007400	116008400	+	654.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-12895.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	2.29	4.61	4.62	6.75	5.13	1.61	3.17	7.52	5.0
Merged-chr6-99300486-3	chr6	99299993	99300993	+	654.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053202, intron 2 of 18)	intron (NM_053202, intron 2 of 18)	-33978.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.0	3.23	1.85	6.07	7.0	2.41	3.17	3.1	5.0
Merged-chr11-100927559-1	chr11	100927059	100928059	+	654.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_213660, intron 1 of 23)	intron (NM_213660, intron 1 of 23)	11981.0	NM_213660	20848.0	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	17.73	24.42	12.02	20.24	13.06	27.33	24.29	22.55	18.11
Merged-chr19-38429326-2	chr19	38428827	38429827	+	654.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33347.0	NM_175507	240660.0	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	4.0	4.15	8.32	2.7	5.13	3.22	2.11	1.77	6.25
Merged-chr2-6096529-2	chr2	6096009	6097009	+	654.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33676.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	6.29	0.92	0.0	1.35	3.27	0.0	2.11	0.0	2.5
Merged-chr9-118041812-3	chr9	118041274	118042274	+	654.622253	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286507, intron 1 of 6)	intron (NM_001286507, intron 1 of 6)	1252.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	81.23	119.34	80.47	57.35	94.7	92.44	110.9	149.89	82.44
Merged-chr9-73103595-2	chr9	73103129	73104129	+	654.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001311106, exon 3 of 4)	exon (NM_001311106, exon 3 of 4)	1231.0	NM_001311106	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	8.01	1.38	4.62	5.4	3.27	4.82	2.11	3.54	5.0
Merged-chr19-45046812-3	chr19	45046335	45047335	+	654.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001178013)	promoter-TSS (NM_001178013)	-741.0	NM_001362380	94280.0	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	12.01	10.6	10.17	25.64	9.8	17.68	12.67	7.96	15.61
Merged-chr1-36941361-3	chr1	36940849	36941849	+	654.527771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1822.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	30.32	23.96	32.37	24.96	15.86	28.94	27.46	34.05	33.1
Merged-chr4-134828040-1	chr4	134827540	134828540	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001355501, exon 4 of 9)	exon (NM_001355501, exon 4 of 9)	25305.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	18.31	21.66	14.8	17.54	13.06	20.09	17.96	8.4	11.87
Merged-chr5-24918655-1	chr5	24918155	24919155	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 4 of 15)	CT-rich|Low_complexity|Low_complexity	-10146.0	NM_001170555	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	4.0	1.84	9.25	12.14	3.73	6.43	4.22	0.0	1.25
Merged-chr1-33904364-2	chr1	33903871	33904871	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177235, intron 1 of 6)	B4|SINE|B4	3250.0	NM_177235	320705.0	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	167.61	139.62	95.27	93.11	51.32	106.9	65.48	75.61	86.81
Merged-chr13-19830735-1	chr13	19830235	19831235	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6478.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	8.01	6.91	7.4	4.05	6.06	5.63	4.22	3.54	5.62
Merged-chr17-8857162-2	chr17	8856672	8857672	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	7187.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	6.29	8.75	20.35	19.57	18.66	11.25	22.18	5.75	7.49
Merged-chr1-92933724-3	chr1	92933223	92934223	+	654.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011796)	promoter-TSS (NM_011796)	-685.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	97.25	119.8	103.59	78.27	88.17	121.37	125.69	143.26	84.94
Merged-chrX-109185250-2	chrX	109184725	109185725	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11531.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	6.29	1.38	3.7	5.4	5.6	2.41	5.28	3.54	3.75
Merged-chr5-86174170-1	chr5	86173670	86174670	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-1427.0	NM_172712	231380.0	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	10.87	11.98	12.02	6.07	5.13	6.43	5.28	3.98	9.37
Merged-chr1-97657354-2	chr1	97656855	97657855	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133825, intron 1 of 2)	MTC|LTR|ERVL-MaLR	4321.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	10.3	8.29	9.25	9.45	11.2	6.43	9.51	3.54	11.87
Merged-chr7-35737030-1	chr7	35736530	35737530	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	17424.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	16.59	13.82	22.2	9.45	9.8	11.25	2.11	2.65	5.62
Merged-chr4-154141340-1	chr4	154140840	154141840	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1032.0	NM_021499	59002.0	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	3.43	2.3	12.02	4.05	2.8	4.82	3.17	0.44	1.87
Merged-chr4-141646808-1	chr4	141646308	141647308	+	654.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	17307.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	131.57	127.64	93.42	72.19	34.99	43.4	148.92	171.56	93.05
Merged-chr7-112042871-1	chr7	112042371	112043371	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133758, intron 1 of 27)	L1MDa|LINE|L1	19365.0	NM_177249	74996.0	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	5.72	7.83	9.25	0.67	8.86	4.82	6.34	4.42	5.0
Merged-chr3-144605985-2	chr3	144605487	144606487	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	35560.0	NM_053102	93684.0	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	3.43	5.07	1.85	4.72	6.06	9.65	5.28	2.65	8.12
Merged-chr2-90547990-1	chr2	90547490	90548490	+	654.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	32657.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	24.03	41.47	31.45	33.06	24.26	16.88	44.36	41.12	41.22
Merged-chr8-61224542-1	chr8	61224042	61225042	+	654.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021506, intron 1 of 11)	CpG	371.0	NM_021506	59009.0	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	1.14	5.07	7.4	12.82	7.46	16.08	3.17	2.65	17.49
Merged-chr10-19934741-3	chr10	19934234	19935234	+	654.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008580, exon 1 of 30)	exon (NM_008580, exon 1 of 30)	208.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	72.65	65.43	61.97	102.56	74.64	74.75	57.03	33.6	49.96
Merged-chr1-39835014-3	chr1	39834537	39835537	+	654.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12293.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	5.72	1.84	7.4	4.72	1.87	0.0	3.17	1.33	4.37
Merged-chr2-68349739-2	chr2	68349226	68350226	+	654.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016866, intron 10 of 17)	intron (NM_016866, intron 10 of 17)	122255.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	8.58	0.46	0.0	5.4	1.4	4.82	4.22	3.98	1.25
Merged-chr11-59519046-2	chr11	59518538	59519538	+	654.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12398.0	NM_172941	268417.0	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.57	1.84	1.85	21.59	21.46	21.7	38.02	44.22	19.98
Merged-chr11-76493955-2	chr11	76493459	76494459	+	654.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	536.0	NM_001346670	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	54.92	44.7	34.22	76.24	58.31	54.66	24.29	20.34	16.24
Merged-chrX-20291756-1	chrX	20291256	20292256	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177353)	promoter-TSS (NM_177353)	8.0	NM_177353	236727.0	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	3.43	1.84	1.85	6.07	2.33	2.41	7.39	0.88	0.62
Merged-chr13-113983898-1	chr13	113983398	113984398	+	654.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	167694.0	NR_045836	319803.0	Mm.386896	NM_177004	ENSMUSG00000114213	A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	8.01	2.3	3.7	2.02	1.4	1.61	5.28	2.65	1.25
Merged-chr11-46488380-1	chr11	46487880	46488880	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33449.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	1.14	2.76	2.77	2.02	4.2	0.8	0.0	4.86	2.5
Merged-chr7-110237758-1	chr7	110237258	110238258	+	654.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	16055.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	23.45	9.68	15.72	16.19	16.33	16.88	20.07	11.05	17.49
Merged-chr15-59412895-2	chr15	59412395	59413395	+	654.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	38697.0	NM_001164604	68501.0	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	41.19	17.97	18.5	55.33	28.46	32.15	25.35	33.6	26.85
Merged-chr7-67242662-2	chr7	67242104	67243104	+	654.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291195, intron 8 of 10)	L1_Mus1|LINE|L1	19988.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	112.12	148.83	99.89	130.9	96.57	128.61	111.96	155.2	82.44
Merged-chr14-121919944-2	chr14	121919444	121920444	+	654.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026861, intron 4 of 8)	intron (NM_026861, intron 4 of 8)	-4170.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	6.86	4.61	3.7	0.67	3.73	1.61	3.17	3.54	6.25
Merged-chr15-51955792-2	chr15	51955304	51956304	+	654.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35956.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	8.58	15.67	20.35	13.49	19.13	9.65	28.52	22.99	11.24
Merged-chr12-98316063-2	chr12	98315565	98316565	+	654.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47430.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	10.3	7.37	11.1	12.82	7.93	21.7	7.39	11.05	5.0
Merged-chr11-23974245-3	chr11	23973754	23974754	+	654.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-78984.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	10.3	4.15	4.62	7.42	2.8	17.68	1.06	3.54	9.99
Merged-chr11-6526842-2	chr11	6526330	6527330	+	654.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045893, intron 2 of 3)	B2_Mm2|SINE|B2	1930.0	NR_045893	100041286.0	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974	small nucleolar RNA host gene 15	ncRNA	28.03	35.02	32.37	16.87	18.19	20.09	36.97	29.18	20.61
Merged-chr12-16864660-2	chr12	16864155	16865155	+	654.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30323.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	21.17	25.34	21.27	25.64	14.93	30.54	9.51	11.05	31.23
Merged-chr1-106138873-2	chr1	106138365	106139365	+	654.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	32659.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	7.44	6.45	14.8	6.07	6.06	9.65	7.39	1.77	3.75
Merged-chr4-141860654-2	chr4	141860128	141861128	+	654.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_025994, exon 3 of 4)	exon (NM_025994, exon 3 of 4)	-14269.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	12.01	15.67	21.27	18.89	7.93	28.94	17.96	12.82	11.24
Merged-chr7-123368354-3	chr7	123367852	123368852	+	654.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	1563.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	80.66	105.98	57.35	95.81	77.91	80.38	86.61	97.72	70.57
Merged-chrX-143058997-3	chrX	143058493	143059493	+	654.022217	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-40601.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	1.72	0.46	3.7	2.7	1.87	1.61	0.0	0.88	1.25
Merged-chr2-93871041-1	chr2	93870541	93871541	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1884.0	NM_001033452	381411.0	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	1.14	4.15	3.7	3.37	2.8	1.61	4.22	1.77	2.5
Merged-chr15-99113864-1	chr15	99113364	99114364	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12981.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	5.15	4.15	1.85	6.75	3.27	1.61	3.17	0.88	3.75
Merged-chr11-102209927-2	chr11	102209422	102210422	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077696, intron 3 of 26)	intron (NM_001077696, intron 3 of 26)	20223.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	6.29	3.69	11.1	9.45	1.87	3.22	4.22	2.21	11.24
Merged-chr15-73643332-1	chr15	73642832	73643832	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18588.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	38.9	21.66	24.97	20.24	20.06	17.68	36.97	33.6	18.11
Merged-chr12-85481396-1	chr12	85480896	85481896	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	7506.0	NM_010234	14281.0	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	8.01	1.84	0.0	4.05	2.8	0.0	4.22	6.63	10.62
Merged-chr1-66814364-1	chr1	66813864	66814864	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	3231.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	49.77	94.92	51.8	76.24	80.24	70.73	82.38	109.22	71.2
Merged-chr13-119453799-1	chr13	119453299	119454299	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 9 of 10)	intron (NM_145457, intron 9 of 10)	-8960.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	12.59	10.14	13.87	13.49	16.79	37.78	12.67	3.98	12.49
Merged-chr2-59493695-1	chr2	59493195	59494195	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029723, intron 1 of 3)	intron (NM_029723, intron 1 of 3)	9042.0	NM_029723	76747.0	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	2.86	3.69	3.7	6.07	5.13	6.43	5.28	2.65	9.37
Merged-chr5-100643464-1	chr5	100642964	100643964	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30792.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	6.29	5.53	5.55	10.8	4.2	0.0	26.4	23.88	19.98
Merged-chr12-108763713-1	chr12	108763213	108764213	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-29598.0	NM_009537	22632.0	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	5.72	17.51	7.4	13.49	6.53	22.51	5.28	8.84	13.12
Merged-chr12-104290045-3	chr12	104289547	104290547	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ETnERV2-int|LTR|ERVK	-24523.0	NM_001101472	238395.0	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	5.15	3.69	10.17	4.05	3.73	6.43	13.73	9.29	10.62
Merged-chr13-30729471-1	chr13	30728971	30729971	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19762.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	10.3	15.67	14.8	16.87	18.66	14.47	8.45	11.5	12.49
Merged-chr16-37440699-1	chr16	37440199	37441199	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55741.0	NM_172440	207227.0	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	3.43	2.76	5.55	4.05	5.6	4.02	6.34	1.77	1.25
Merged-chr4-32388036-1	chr4	32387536	32388536	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-29399.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.0	3.69	0.0	5.4	3.73	7.23	3.17	0.44	2.5
Merged-chr12-20232622-1	chr12	20232122	20233122	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	583157.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	2.86	5.07	15.72	4.72	8.86	12.86	6.34	7.96	8.74
Merged-chr9-114583983-1	chr9	114583483	114584483	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19614.0	NM_001042503	636931.0	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	4.58	1.84	5.55	1.35	0.47	3.22	4.22	0.88	3.75
Merged-chr8-14952522-1	chr8	14952022	14953022	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037736, intron 10 of 27)	intron (NM_001037736, intron 10 of 27)	40859.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.0	3.23	0.0	2.02	0.0	0.0	0.0	0.88	6.87
Merged-chr1-175660097-1	chr1	175659597	175660597	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133809, exon 15 of 15)	3' UTR (NM_133809, exon 15 of 15)	27904.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	6.86	3.23	3.7	3.37	3.27	16.08	3.17	2.21	3.12
Merged-chrX-143052795-1	chrX	143052295	143053295	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46799.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	7.44	1.84	1.85	1.35	0.47	1.61	1.06	0.88	0.62
Merged-chr6-54936715-1	chr6	54936215	54937215	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171007, intron 7 of 11)	intron (NM_001171007, intron 7 of 11)	34946.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	13.73	31.79	18.5	6.75	7.0	8.04	24.29	19.01	17.49
Merged-chr6-117915634-1	chr6	117915134	117916134	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166428, intron 1 of 3)	intron (NM_001166428, intron 1 of 3)	-1660.0	NM_001166427	98758.0	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	37.76	56.22	45.32	36.43	35.92	32.15	39.08	52.62	49.34
Merged-chr9-87098248-1	chr9	87097748	87098748	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46058.0	NM_001177731	244958.0	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	4.58	2.3	2.77	5.4	0.93	8.04	0.0	2.21	1.25
Merged-chr11-68451566-1	chr11	68451066	68452066	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177320, intron 1 of 18)	intron (NM_177320, intron 1 of 18)	19441.0	NM_177320	320207.0	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik|Foap2|p101	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	6.86	2.3	5.55	9.45	8.86	4.82	2.11	2.65	7.49
Merged-chr11-116985759-2	chr11	116985244	116986244	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_172948, exon 17 of 17)	3' UTR (NM_172948, exon 17 of 17)	66881.0	NM_172948	268510.0	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	5.15	2.76	12.02	6.75	5.6	6.43	7.39	7.96	5.0
Merged-chr15-98937469-3	chr15	98936949	98937949	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3059.0	NM_011654	22143.0	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	110.41	63.13	79.55	60.05	31.26	71.54	87.66	69.86	53.71
Merged-chr19-46619068-1	chr19	46618568	46619568	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177812, intron 2 of 4)	intron (NM_001177812, intron 2 of 4)	-4333.0	NM_001177813	226178.0	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	18.31	17.51	5.55	29.69	20.53	36.17	28.52	24.76	22.48
Merged-chr2-132601207-1	chr2	132600707	132601707	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033469, intron 1 of 3)	intron (NR_033469, intron 1 of 3)	3011.0	NR_033469	767814.0	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	72.65	70.96	44.4	87.71	62.51	77.97	38.02	42.45	36.22
Merged-chr1-166125097-1	chr1	166124597	166125597	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033344, intron 2 of 5)	intron (NM_001033344, intron 2 of 5)	2801.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	7.44	3.69	0.92	10.12	0.93	5.63	3.17	2.21	4.37
Merged-chr17-79663970-1	chr17	79663470	79664470	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201361, intron 5 of 10)	intron (NM_201361, intron 5 of 10)	49070.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	2.29	6.45	7.4	6.75	2.33	2.41	6.34	4.86	2.5
Merged-chr10-117930066-1	chr10	117929566	117930566	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045342, intron 2 of 3)	MLT1L|LTR|ERVL-MaLR	4607.0	NR_045342	71067.0	Mm.410793	NR_045342	ENSMUSG00000112500	4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	7.44	3.23	1.85	6.75	0.47	8.04	6.34	3.98	3.75
Merged-chr10-5197510-1	chr10	5197010	5198010	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347711, intron 90 of 145)	intron (NM_001347711, intron 90 of 145)	-2803.0	NM_001079686	64009.0	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	4.0	4.61	0.0	3.37	4.2	3.22	1.06	1.33	5.0
Merged-chr15-100312617-1	chr15	100312117	100313117	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027334, intron 1 of 1)	intron (NM_027334, intron 1 of 1)	7800.0	NM_027334	70152.0	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	21.74	19.81	11.1	14.84	12.6	12.86	20.07	22.11	16.86
Merged-chr8-115269826-1	chr8	115269326	115270326	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	437068.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	3.43	2.76	7.4	3.37	1.4	1.61	6.34	0.88	12.49
Merged-chr17-67260608-1	chr17	67260108	67261108	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	93851.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	37.76	57.6	26.82	40.48	29.39	30.54	117.24	151.22	66.82
Merged-chr5-30172193-2	chr5	30171689	30172689	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145558, intron 6 of 15)	intron (NM_145558, intron 6 of 15)	1450.0	NR_035486	100316709.0		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	24.03	9.68	9.25	29.69	13.06	3.22	12.67	8.4	3.75
Merged-chr7-38064689-1	chr7	38064189	38065189	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	42801.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	2.86	4.15	5.55	2.7	5.13	3.22	6.34	0.44	1.25
Merged-chr1-118759716-1	chr1	118759216	118760216	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131771.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	4.0	0.92	0.0	3.37	2.33	6.43	4.22	1.33	2.5
Merged-chr1-182375336-1	chr1	182374836	182375836	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33730.0	NM_175127	67948.0	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	1.72	2.3	0.0	10.12	1.87	8.04	9.51	6.19	10.62
Merged-chr7-46839588-1	chr7	46839088	46840088	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6216.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	34.32	36.4	30.52	40.48	23.79	52.25	31.69	30.51	10.62
Merged-chr2-49734111-1	chr2	49733611	49734611	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 15 of 25)	intron (NM_008449, intron 15 of 25)	-53575.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	12.59	23.5	22.2	14.17	15.39	20.9	21.12	25.65	14.36
Merged-chr3-31370254-1	chr3	31369754	31370754	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59935.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.43	3.23	12.95	3.37	1.87	4.02	2.11	1.33	4.37
Merged-chr3-101556723-1	chr3	101556223	101557223	+	654.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	47984.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	2.86	2.76	5.55	2.7	4.2	8.84	9.51	3.98	8.74
Merged-chr17-66854620-1	chr17	66854120	66855120	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 15 of 32)	intron (NM_001357625, intron 15 of 32)	140164.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	5.72	4.61	3.7	7.42	0.93	3.22	4.22	0.44	5.62
Merged-chr15-100131882-1	chr15	100131382	100132382	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159361, intron 2 of 37)	intron (NM_001159361, intron 2 of 37)	-22514.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	29.17	16.59	15.72	30.36	13.53	16.08	16.9	16.8	18.74
Merged-chr11-82764987-1	chr11	82764487	82765487	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001291242)	promoter-TSS (NM_001291242)	642.0	NM_025884	66983.0	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	125.28	119.8	82.32	90.41	90.5	111.73	125.69	95.95	73.07
Merged-chr7-81303923-2	chr7	81303424	81304424	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 8 of 21)	intron (NM_008803, intron 8 of 21)	41310.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	45.76	29.03	24.05	31.04	22.86	23.31	33.8	29.18	18.74
Merged-chr9-46230013-1	chr9	46229513	46230513	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009692, exon 4 of 4)	exon (NM_009692, exon 4 of 4)	1383.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	6.86	0.46	0.0	6.75	1.4	0.0	5.28	1.77	6.25
Merged-chr8-56370812-1	chr8	56370312	56371312	+	654.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76260.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	5.72	6.91	9.25	4.72	2.33	12.86	6.34	2.21	4.37
Merged-chr16-4303833-1	chr16	4303333	4304333	+	654.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009624, intron 7 of 10)	intron (NM_009624, intron 7 of 10)	74604.0	NR_003628	436332.0	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	6.29	5.07	5.55	1.35	2.33	0.0	1.06	1.77	8.74
Merged-chr11-29823398-3	chr11	29822914	29823914	+	653.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_176829, exon 1 of 1)	3' UTR (NM_176829, exon 1 of 1)	2254.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	10.3	8.75	11.1	2.02	6.06	7.23	3.17	3.1	9.37
Merged-chr4-116176589-3	chr4	116176091	116177091	+	653.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3219.0	NM_001099295	67323.0	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	53.77	62.67	49.95	87.04	77.44	115.75	96.11	115.85	55.58
Merged-chr3-89419166-2	chr3	89418693	89419693	+	653.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_016904)	promoter-TSS (NM_016904)	642.0	NM_011368	20416.0	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	116.13	77.87	93.42	86.36	62.51	107.71	119.35	99.49	47.46
Merged-chr10-9893691-2	chr10	9893190	9894190	+	653.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081344, intron 2 of 25)	intron (NM_001081344, intron 2 of 25)	7350.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	1.14	3.23	7.4	6.75	2.8	6.43	4.22	5.31	13.74
Merged-chr19-6934023-3	chr19	6933527	6934527	+	653.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008431, intron 1 of 6)	CpG	488.0	NM_008431	16528.0	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	Catsperz|MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	4.58	3.69	0.0	9.45	0.93	1.61	4.22	1.77	7.49
Merged-chr5-99602938-3	chr5	99602446	99603446	+	653.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	126114.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	6.86	3.23	1.85	2.7	3.27	4.82	6.34	1.77	4.37
Merged-chr2-160374423-2	chr2	160373917	160374917	+	653.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7352.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	34.9	20.27	28.67	25.64	8.86	16.08	32.74	14.59	21.23
Merged-chr6-148896989-1	chr6	148896489	148897489	+	653.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301351)	promoter-TSS (NM_001301351)	-752.0	NM_181541	232560.0	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	9.72	6.45	11.1	7.42	7.93	5.63	2.11	10.17	3.75
Merged-chr19-6046110-2	chr19	6045625	6046625	+	653.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028769)	promoter-TSS (NM_028769)	-451.0	NM_028769	74126.0	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	403.3	336.83	172.04	288.78	258.91	183.26	282.0	387.78	113.04
Merged-chr1-75400061-2	chr1	75399556	75400556	+	653.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001173477)	promoter-TSS (NM_001173477)	-29.0	NM_001173477	11790.0	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	10.3	15.21	10.17	26.31	29.86	25.72	26.4	26.97	16.24
Merged-chr15-81155413-1	chr15	81154913	81155913	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	35344.0	NM_001082536	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	13.16	16.59	18.5	18.89	21.46	31.35	15.84	12.38	14.36
Merged-chr17-84094531-1	chr17	84094031	84095031	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15871.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	57.78	41.47	52.72	59.38	40.12	65.91	44.36	45.1	28.1
Merged-chr11-75584885-1	chr11	75584385	75585385	+	653.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3194.0	NM_008850	18738.0	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	26.31	15.21	20.35	22.27	21.93	16.08	21.12	23.43	17.49
Merged-chr2-162977459-1	chr2	162976959	162977959	+	653.666687	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001081338)	TTS (NM_001081338)	-10022.0	NM_001291154	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	5.15	4.15	12.95	6.07	7.0	4.82	14.79	7.52	6.25
Merged-chr3-127300062-1	chr3	127299562	127300562	+	653.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001327938, intron 1 of 47)	intron (NM_001327938, intron 1 of 47)	108996.0	NM_001327939	109676.0	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	12.01	7.83	6.47	8.77	4.2	16.88	12.67	19.46	7.49
Merged-chr4-128635763-1	chr4	128635263	128636263	+	653.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17144.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	28.6	22.12	13.87	14.17	8.4	6.43	17.96	10.17	7.49
Merged-chr9-7570581-1	chr9	7570081	7571081	+	653.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310717)	promoter-TSS (NM_001310717)	-815.0	NM_001310717	234911.0	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	51.48	44.7	63.82	41.16	54.58	84.4	73.93	92.86	54.33
Merged-chr4-155144473-2	chr4	155143950	155144950	+	653.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081100, intron 13 of 13)	intron (NM_001081100, intron 13 of 13)	57846.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	7.44	5.99	0.0	6.07	2.8	1.61	1.06	0.88	0.0
Merged-chr12-84772167-2	chr12	84771573	84772573	+	653.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 1 of 3)	intron (NM_023409, intron 1 of 3)	1039.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	171.04	145.61	85.1	126.17	132.49	119.76	174.27	237.44	101.17
Merged-chr3-27281210-2	chr3	27280720	27281720	+	653.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35857.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	13.16	16.59	12.95	36.43	22.86	24.92	25.35	29.18	26.85
Merged-chr7-38028849-3	chr7	38028372	38029372	+	653.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9320.0	NM_011274	19777.0	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	55.49	39.17	30.52	37.78	33.12	27.33	14.79	18.57	13.12
Merged-chr2-144300268-2	chr2	144299749	144300749	+	653.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29345.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	33.75	32.25	49.95	53.3	37.32	72.34	44.36	56.6	39.97
Merged-chr9-111095921-1	chr9	111095421	111096421	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-22190.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	6.86	1.84	5.55	15.52	3.27	4.02	5.28	4.42	2.5
Merged-chr10-44495598-2	chr10	44495096	44496096	+	653.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36848.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	10.87	9.22	3.7	6.07	4.2	2.41	8.45	5.31	6.25
Merged-chr1-166153560-2	chr1	166153044	166154044	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021610, intron 3 of 6)	intron (NM_021610, intron 3 of 6)	23323.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	3.43	2.3	1.85	6.07	3.73	1.61	8.45	2.65	0.0
Merged-chr6-83006261-1	chr6	83005761	83006761	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033079, intron 6 of 9)	intron (NM_033079, intron 6 of 9)	27210.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	37.76	30.87	21.27	45.88	37.32	49.03	15.84	14.59	15.61
Merged-chr11-88994437-1	chr11	88993937	88994937	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4966.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	14.87	12.9	20.35	13.49	9.33	16.88	4.22	8.4	8.74
Merged-chr3-40739185-1	chr3	40738685	40739685	+	653.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6428.0	NM_011020	18415.0	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	2.86	2.3	1.85	9.45	7.93	4.82	7.39	5.31	8.74
Merged-chr4-142010698-1	chr4	142010198	142011198	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	953.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	8.01	5.07	1.85	4.05	4.67	3.22	11.62	5.75	1.25
Merged-chr17-24645274-2	chr17	24644818	24645818	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023449)	promoter-TSS (NM_023449)	-361.0	NM_023449	65962.0	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	6.29	7.83	4.62	15.52	14.46	12.06	16.9	7.96	12.49
Merged-chr9-15033785-2	chr9	15033273	15034273	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	11705.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	20.59	17.97	6.47	37.78	48.05	29.74	32.74	19.01	2.5
Merged-chr5-21220737-1	chr5	21220237	21221237	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 6 of 26)	intron (NR_153365, intron 6 of 26)	34470.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	10.87	17.05	7.4	13.49	7.93	4.82	22.18	5.75	15.61
Merged-chr4-150316721-1	chr4	150316221	150317221	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	34805.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.58	4.15	1.85	6.75	6.06	6.43	2.11	7.96	4.37
Merged-chr12-55302063-1	chr12	55301563	55302563	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025373)	promoter-TSS (NM_025373)	-574.0	NM_025373	66132.0	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	213.38	231.77	147.99	152.49	163.74	155.13	182.72	235.23	102.42
Merged-chr5-21586963-1	chr5	21586463	21587463	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199632, intron 7 of 20)	B3A|SINE|B2	43436.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	1.14	4.15	3.7	8.77	2.33	0.0	3.17	1.33	1.25
Merged-chr16-24575910-1	chr16	24575410	24576410	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 4 of 12)	intron (NM_178665, intron 4 of 12)	46596.0	NR_038091	624582.0	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	13.16	6.91	5.55	5.4	1.4	3.22	12.67	5.31	0.62
Merged-chr15-73604754-1	chr15	73604254	73605254	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357747, intron 2 of 7)	intron (NM_001357747, intron 2 of 7)	-8228.0	NM_001168255	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.29	5.07	1.85	6.75	5.13	13.66	3.17	6.63	6.25
Merged-chr7-30553192-1	chr7	30552692	30553692	+	653.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_183321)	promoter-TSS (NM_183321)	-110.0	NM_001012401	243912.0	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	29.17	28.57	19.42	21.59	24.26	24.11	38.02	48.64	32.48
Merged-chr1-37720024-1	chr1	37719524	37720524	+	653.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028096)	promoter-TSS (NM_028096)	-213.0	NM_028096	72097.0	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	1.14	3.23	0.0	0.67	0.93	4.82	7.39	1.77	3.75
Merged-chr8-70522234-3	chr8	70521730	70522730	+	653.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029366, intron 1 of 4)	B2_Mm2|SINE|B2	950.0	NM_029366	75620.0	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	48.05	44.7	33.3	64.1	45.72	44.21	65.48	51.73	29.98
Merged-chr16-11054612-2	chr16	11054096	11055096	+	653.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11702.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	14.87	9.22	9.25	19.57	4.67	11.25	25.35	8.84	17.49
Merged-chr6-28621169-2	chr6	28620677	28621677	+	653.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	140829.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	21.17	33.64	41.62	32.39	23.33	13.66	38.02	41.12	18.74
Merged-chr16-4587841-1	chr16	4587341	4588341	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_031184	83396.0	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	74.37	93.54	56.42	74.22	79.31	91.63	65.48	65.88	45.59
Merged-chr8-122523450-1	chr8	122522950	122523950	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037298, intron 1 of 50)	intron (NM_001037298, intron 1 of 50)	27879.0	NM_001037298	234839.0	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	8.58	8.29	7.4	6.07	13.06	27.33	3.17	5.75	11.24
Merged-chr2-148580697-1	chr2	148580197	148581197	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-91918.0	NM_019761	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	6.86	2.3	2.77	6.75	2.8	1.61	2.11	3.1	1.25
Merged-chr9-32962934-1	chr9	32962434	32963434	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER126|DNA|DNA	-33968.0	NR_131058	330917.0	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	1.14	5.99	0.0	5.4	4.2	8.04	4.22	1.77	2.5
Merged-chr10-91168423-1	chr10	91167923	91168923	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080129, intron 1 of 8)	B1_Mus1|SINE|Alu	2127.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	16.02	26.26	44.4	16.87	10.26	13.66	16.9	18.57	28.1
Merged-chr8-46497111-1	chr8	46496611	46497611	+	653.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302163, intron 2 of 20)	intron (NM_001302163, intron 2 of 20)	6145.0	NM_001302163	14081.0	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	23.45	11.98	5.55	33.06	22.86	12.86	32.74	24.32	9.99
Merged-chr10-111925677-3	chr10	111925173	111926173	+	653.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47022.0	NM_178610	52705.0	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	4.0	1.38	1.85	1.35	2.8	0.0	3.17	3.54	1.25
Merged-chr13-62880438-1	chr13	62879938	62880938	+	653.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019395, intron 1 of 6)	intron (NM_019395, intron 1 of 6)	7844.0	NM_019395	14121.0	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	5.72	3.23	3.7	2.7	8.86	5.63	10.56	5.31	11.24
Merged-chr11-100295524-2	chr11	100295038	100296038	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24411.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	7.44	4.61	2.77	4.72	2.33	0.0	3.17	2.65	5.0
Merged-chr10-20719370-2	chr10	20718871	20719871	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	G-rich|Low_complexity|Low_complexity	5707.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	10.87	11.98	1.85	10.8	13.06	7.23	16.9	11.94	14.99
Merged-chr4-63400117-2	chr4	63399639	63400639	+	653.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045514, intron 1 of 21)	intron (NM_001045514, intron 1 of 21)	-1899.0	NM_001305432	100182.0	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	189.35	145.61	144.29	172.05	140.42	180.85	205.96	213.12	97.43
Merged-chr7-97424993-2	chr7	97424493	97425493	+	653.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7443.0	NM_009381	21835.0	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	4.58	2.3	1.85	2.7	3.27	0.8	2.11	8.4	0.62
Merged-chr7-18892447-2	chr7	18891947	18892947	+	653.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033314, exon 10 of 14)	exon (NM_001033314, exon 10 of 14)	7757.0	NM_009402	21946.0	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	2.86	0.92	7.4	6.07	0.0	6.43	5.28	1.77	6.87
Merged-chr17-67449573-2	chr17	67449061	67450061	+	653.150024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-95070.0	NM_001357625	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	43.48	34.1	38.85	28.34	18.19	5.63	44.36	42.89	22.48
Merged-chr7-87926593-5	chr7	87926121	87927121	+	653.142883	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081414, intron 4 of 9)	intron (NM_001081414, intron 4 of 9)	342453.0	NM_001143834	108071.0	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	33.75	24.42	9.25	61.4	50.85	27.33	44.36	41.56	21.86
Merged-chr2-156840001-3	chr2	156839489	156840489	+	653.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_173396)	promoter-TSS (NM_173396)	-18.0	NM_001291124	228839.0	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	47.48	13.36	10.17	49.25	8.4	8.84	27.46	10.61	2.5
Merged-chr8-25038556-2	chr8	25038025	25039025	+	653.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_031257)	TTS (NM_031257)	437.0	NM_001081187	330723.0	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	7.44	4.15	9.25	10.12	2.33	14.47	10.56	4.86	4.37
Merged-chr5-21363487-2	chr5	21362995	21363995	+	653.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	L1MA5|LINE|L1	-9178.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	13.73	9.22	3.7	10.8	6.53	12.86	15.84	14.15	6.87
Merged-chr15-39320979-1	chr15	39320479	39321479	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053271, intron 4 of 26)	intron (NM_053271, intron 4 of 26)	122693.0	NM_053271	116838.0	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.14	0.92	1.85	0.67	3.73	2.41	4.22	4.42	6.25
Merged-chr13-56592122-1	chr13	56591622	56592622	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-17464.0	NM_009369	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	15.45	11.52	14.8	16.19	8.86	19.29	15.84	6.19	25.61
Merged-chr9-37406699-1	chr9	37406199	37407199	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001309390, intron 10 of 17)	intron (NM_001309390, intron 10 of 17)	4802.0	NM_001309390	74144.0	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	4.0	2.76	1.85	3.37	5.6	3.22	2.11	0.88	0.0
Merged-chr11-88205064-2	chr11	88204505	88205505	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291271, intron 1 of 4)	intron (NM_001291271, intron 1 of 4)	617.0	NM_001291271	64656.0	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	124.71	101.83	104.52	118.75	135.29	125.39	140.47	121.6	72.45
Merged-chr1-184631501-1	chr1	184631001	184632001	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73810.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	5.72	1.38	6.47	5.4	1.4	0.0	3.17	4.42	5.0
Merged-chr2-163055188-1	chr2	163054688	163055688	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008652, intron 1 of 13)	CpG	553.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	5.72	5.07	3.7	6.75	7.0	5.63	7.39	3.1	1.25
Merged-chr9-55307281-1	chr9	55306781	55307781	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19632.0	NM_172923	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	19.45	17.97	14.8	26.31	30.79	40.19	19.01	12.82	11.24
Merged-chr7-90135639-1	chr7	90135139	90136139	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	5426.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	84.09	127.64	66.6	93.79	121.76	66.71	62.31	61.46	43.72
Merged-chr17-34947864-1	chr17	34947364	34948364	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	3144.0	NR_028527	100217427.0		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	2.86	6.45	1.85	4.05	2.8	1.61	5.28	4.42	1.25
Merged-chr4-135883457-1	chr4	135882957	135883957	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9611.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	3.43	2.76	0.0	3.37	2.33	3.22	9.51	7.07	7.49
Merged-chr11-50255040-1	chr11	50254540	50255540	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175334)	TTS (NM_175334)	-16508.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	12.01	11.06	13.87	10.8	6.06	16.08	30.63	17.24	21.86
Merged-chr7-97080491-1	chr7	97079991	97080991	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	34.32	45.16	37.92	26.99	20.06	30.54	47.53	43.33	32.48
Merged-chr6-31215777-1	chr6	31215277	31216277	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	2697.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	139.58	72.34	47.17	155.86	118.03	81.99	76.05	61.9	29.35
Merged-chr4-3683876-1	chr4	3683376	3684376	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	PB1|SINE|Alu	5755.0	NM_010747	17096.0	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	142.44	144.69	110.99	144.39	95.17	118.96	176.38	192.78	169.87
Merged-chr10-70225974-1	chr10	70225474	70226474	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19302.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	14.3	14.28	14.8	14.17	16.33	18.49	17.96	19.01	21.86
Merged-chr2-77327932-1	chr2	77327432	77328432	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-47340.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.86	3.23	0.0	3.37	0.93	3.22	3.17	3.1	3.75
Merged-chr19-46478419-1	chr19	46477919	46478919	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 10 of 11)	intron (NM_001025391, intron 10 of 11)	-23229.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	25.17	22.58	25.9	45.88	35.45	54.66	26.4	13.27	11.87
Merged-chr6-126851514-1	chr6	126851014	126852014	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1584.0	NM_009650	11642.0	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	15.45	11.06	18.5	13.49	12.6	17.68	8.45	4.42	2.5
Merged-chr11-89091048-1	chr11	89090548	89091548	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	CT-rich|Low_complexity|Low_complexity	17207.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	6.29	4.15	3.7	1.35	0.0	1.61	43.3	42.45	61.2
Merged-chr13-60746376-1	chr13	60745876	60746876	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 19 of 26)	intron (NM_134062, intron 19 of 26)	39988.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.58	7.83	0.0	10.8	3.27	3.22	1.06	1.77	3.75
Merged-chr18-75047426-1	chr18	75046926	75047926	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 2 of 16)	intron (NM_027727, intron 2 of 16)	28654.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	5.15	1.38	9.25	6.07	7.0	3.22	5.28	4.42	0.62
Merged-chr8-46143596-2	chr8	46143099	46144099	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19453.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	48.05	88.01	77.7	59.38	44.32	61.09	58.09	67.65	37.47
Merged-chr9-77732275-1	chr9	77731775	77732775	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22260.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	13.73	7.83	3.7	14.84	6.06	3.22	7.39	5.31	5.0
Merged-chr13-99184900-1	chr13	99184400	99185400	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	77.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	52.63	68.66	55.5	72.19	66.71	58.68	108.79	146.36	51.21
Merged-chr14-60290193-2	chr14	60289697	60290697	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144843, intron 6 of 13)	intron (NM_144843, intron 6 of 13)	24992.0	NM_144843	219135.0	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	42.33	83.4	44.4	45.21	44.32	32.15	44.36	50.85	42.47
Merged-chr2-148488125-1	chr2	148487625	148488625	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44590.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	66.36	81.1	59.2	37.11	41.99	28.13	46.47	24.32	28.73
Merged-chr9-25484664-1	chr9	25484164	25485164	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 2 of 7)	intron (NM_026189, intron 2 of 7)	3067.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	24.03	28.57	6.47	25.64	13.53	5.63	25.35	22.99	6.87
Merged-chrX-152180102-1	chrX	152179602	152180602	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005475, intron 1 of 13)	intron (NM_001005475, intron 1 of 13)	1093.0	NM_001005475	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	18.31	20.27	20.35	14.17	8.86	9.65	13.73	12.38	13.74
Merged-chr11-76846334-1	chr11	76845834	76846834	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007754, exon 1 of 21)	exon (NM_007754, exon 1 of 21)	674.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	56.06	35.48	22.2	59.38	36.85	32.96	42.25	30.95	23.73
Merged-chr1-167231279-1	chr1	167230779	167231779	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 4 of 6)	MIRc|SINE|MIR	53848.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	2.29	2.3	2.77	2.02	1.4	1.61	4.22	1.77	0.0
Merged-chr8-120685342-1	chr8	120684842	120685842	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17022.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	42.33	46.08	67.52	89.06	79.77	121.37	74.99	62.35	53.71
Merged-chr17-7175402-1	chr17	7174902	7175902	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011299, intron 1 of 20)	intron (NM_011299, intron 1 of 20)	5287.0	NM_011299	20112.0	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	6.86	2.3	1.85	7.42	0.93	1.61	2.11	4.42	5.62
Merged-chr10-40316651-1	chr10	40316151	40317151	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-14463.0	NM_009665	11702.0	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	18.31	19.35	16.65	20.24	10.73	14.47	24.29	15.48	18.11
Merged-chr1-135815520-2	chr1	135815012	135816012	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3086.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	4.0	0.46	2.77	4.72	3.73	1.61	3.17	3.54	1.25
Merged-chr6-128829922-1	chr6	128829422	128830422	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3607.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	4.0	5.07	1.85	5.4	8.4	8.04	4.22	4.42	3.75
Merged-chr7-143073225-2	chr7	143072717	143073717	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_020277, exon 23 of 25)	exon (NM_020277, exon 23 of 25)	3849.0	NM_001115085	56844.0	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	8.58	3.69	5.55	6.75	4.67	4.02	3.17	0.88	1.25
Merged-chr7-81234369-1	chr7	81233869	81234869	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	20565.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	10.87	5.07	6.47	14.17	3.27	7.23	17.96	3.54	7.49
Merged-chr18-23866109-1	chr18	23865609	23866609	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 5 of 7)	intron (NM_001162941, intron 5 of 7)	62139.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	12.59	15.21	16.65	10.8	10.26	8.04	21.12	15.48	7.49
Merged-chr6-108212216-1	chr6	108211716	108212716	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010585)	promoter-TSS (NM_010585)	-880.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	17.73	15.21	22.2	16.19	12.13	16.88	12.67	19.01	7.49
Merged-chr11-78044837-1	chr11	78044337	78045337	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284228, intron 1 of 11)	intron (NM_001284228, intron 1 of 11)	4530.0	NM_001284228	14252.0	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	11.44	7.37	3.7	8.77	6.06	12.86	6.34	5.31	8.74
Merged-chr9-14885320-1	chr9	14884820	14885820	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_176807)	TTS (NM_176807)	18631.0	NM_176807	64931.0	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	14.3	13.36	2.77	15.52	18.19	14.47	17.96	13.27	9.99
Merged-chr12-3712760-1	chr12	3712260	3713260	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 9 of 17)	intron (NM_001162465, intron 9 of 17)	-94220.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	8.01	5.53	16.65	4.05	8.4	1.61	10.56	7.96	6.25
Merged-chr3-19369203-1	chr3	19368703	19369703	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-57881.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	1.72	0.92	1.85	4.05	5.13	0.0	1.06	1.77	5.0
Merged-chr9-45313593-1	chr9	45313093	45314093	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5507.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	5.72	5.07	1.85	6.75	2.8	8.84	9.51	9.29	2.5
Merged-chr3-57550647-1	chr3	57550147	57551147	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133784, intron 2 of 6)	intron (NM_133784, intron 2 of 6)	25229.0	NM_133784	97064.0	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	3.43	0.92	1.85	2.02	3.27	1.61	1.06	1.33	2.5
Merged-chr5-134558296-1	chr5	134557796	134558796	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013751, exon 1 of 1)	exon (NM_001013751, exon 1 of 1)	1875.0	NM_001013751	214292.0	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	6.29	0.46	3.7	2.7	4.2	4.82	1.06	0.44	1.25
Merged-chr12-79628245-3	chr12	79627845	79628845	+	653.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	296388.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	64.64	92.62	96.2	87.04	48.98	67.52	70.76	103.02	41.84
Merged-chr8-11462085-1	chr8	11461585	11462585	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-15844.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	148.16	115.2	121.17	134.94	122.23	165.58	177.44	149.45	78.07
Merged-chr3-149084347-1	chr3	149083847	149084847	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129712.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	43.48	44.7	19.42	39.13	43.85	54.66	6.34	8.84	3.75
Merged-chr14-30192886-1	chr14	30192386	30193386	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 4 of 46)	intron (NM_001083616, intron 4 of 46)	160600.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	7.44	9.68	14.8	14.17	7.0	10.45	6.34	8.84	11.87
Merged-chr4-122858096-2	chr4	122857601	122858601	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001358036)	TTS (NM_001358036)	21874.0	NM_008917	19063.0	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	11.44	11.52	13.87	8.1	9.33	30.54	8.45	11.05	5.0
Merged-chr18-60373259-1	chr18	60372759	60373759	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021792)	promoter-TSS (NM_021792)	-357.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	18.31	25.8	27.75	7.42	14.0	6.43	16.9	12.82	21.23
Merged-chr9-41434829-1	chr9	41434329	41435329	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131928, intron 3 of 4)	intron (NR_131928, intron 3 of 4)	-40064.0	NR_131931	73144.0	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	2.29	7.37	13.87	10.8	8.4	16.08	15.84	4.86	8.12
Merged-chr2-154659585-2	chr2	154659038	154660038	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	2512.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	26.89	27.19	57.35	40.48	29.39	32.15	42.25	36.26	26.85
Merged-chr9-116138706-1	chr9	116138206	116139206	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	36657.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	73.79	48.84	48.1	80.29	71.38	65.11	54.92	45.54	34.35
Merged-chr4-142153726-1	chr4	142153226	142154226	+	653.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109684, intron 3 of 6)	intron (NM_001109684, intron 3 of 6)	56482.0	NM_144531	71529.0	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	2.29	2.76	0.92	5.4	2.8	1.61	1.06	0.44	3.12
Merged-chr2-167629851-1	chr2	167629351	167630351	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311131, intron 1 of 4)	intron (NM_001311131, intron 1 of 4)	2154.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	9.72	11.06	8.32	6.75	4.2	3.22	8.45	4.42	1.87
Merged-chr1-118448445-1	chr1	118447945	118448945	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 2 of 39)	CT-rich|Low_complexity|Low_complexity	10820.0	NR_027901	68204.0	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	6.86	10.14	0.0	10.8	5.13	5.63	10.56	2.65	3.75
Merged-chr18-46867008-1	chr18	46866508	46867508	+	653.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029008, intron 3 of 19)	intron (NM_029008, intron 3 of 19)	16969.0	NM_029008	74574.0	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	1.72	3.23	1.85	2.02	2.8	3.22	2.11	1.77	1.25
Merged-chr9-119100520-2	chr9	119100035	119101035	+	652.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1943.0	NM_177117	320256.0	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	5.72	1.84	3.7	2.02	0.93	1.61	6.34	6.19	4.37
Merged-chr7-16129687-2	chr7	16129154	16130154	+	652.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148946)	promoter-TSS (NM_148946)	-172.0	NM_001347561	110891.0	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	1.14	0.0	3.7	7.42	0.0	3.22	2.11	0.88	0.62
Merged-chr15-58343381-2	chr15	58342883	58343883	+	652.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027211, intron 8 of 8)	intron (NM_027211, intron 8 of 8)	-19214.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	78.94	59.44	60.12	45.88	38.72	38.58	76.05	93.3	40.59
Merged-chrX-97431634-2	chrX	97431109	97432109	+	652.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54400.0	NM_001161433	245527.0	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	9.15	8.75	1.85	7.42	5.13	1.61	3.17	4.86	2.5
Merged-chr8-124349926-2	chr8	124349430	124350430	+	652.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84006.0	NM_171824	209966.0	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	5.15	3.23	3.7	4.72	0.93	5.63	2.11	0.88	2.5
Merged-chr6-83711203-2	chr6	83710709	83711709	+	652.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011912)	promoter-TSS (NM_011912)	-55.0	NM_011912	24113.0	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	7.44	1.38	6.47	6.75	1.87	3.22	1.06	0.88	0.0
Merged-chr13-98929139-3	chr13	98928644	98929644	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2760.0	NM_178716	238799.0	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	6.29	8.29	7.4	7.42	7.93	0.0	12.67	11.05	8.74
Merged-chr16-38712132-3	chr16	38711660	38712660	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	875.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	26.89	23.5	24.97	25.64	12.13	23.31	55.98	78.71	66.2
Merged-chr17-48300448-3	chr17	48299991	48300991	+	652.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033405, exon 1 of 5)	5' UTR (NM_001033405, exon 1 of 5)	453.0	NM_001360121	328833.0	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	8.01	12.9	18.5	12.14	14.93	15.27	42.25	26.09	16.24
Merged-chr11-3129891-2	chr11	3129375	3130375	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003517, exon 6 of 7)	non-coding (NR_003517, exon 6 of 7)	5854.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	21.74	17.97	42.55	20.24	19.59	31.35	2.11	3.1	43.09
Merged-chr5-64934469-2	chr5	64933968	64934968	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276445)	promoter-TSS (NM_001276445)	-910.0	NM_001276445	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	13.73	15.67	14.8	16.19	11.66	19.29	25.35	22.11	13.12
Merged-chr1-143996223-2	chr1	143995738	143996738	+	652.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	7911.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	13.73	9.22	7.4	5.4	3.73	3.22	5.28	7.07	9.99
Merged-chr12-76496421-1	chr12	76495921	76496921	+	652.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36791.0	NR_039597	100628604.0		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	3.43	3.23	1.85	6.07	3.73	4.82	2.11	3.54	6.25
Merged-chr5-23453729-2	chr5	23453212	23454212	+	652.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026984, intron 2 of 25)	B2_Mm2|SINE|B2	19283.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	6.86	9.22	11.1	2.7	2.33	2.41	10.56	3.1	6.25
Merged-chr8-37224788-1	chr8	37224288	37225288	+	652.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-200550.0	NR_126063	414128.0	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.86	4.61	1.85	2.02	4.67	0.0	3.17	3.98	3.75
Merged-chr14-67811373-1	chr14	67810873	67811873	+	652.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 21 of 51)	intron (NM_177780, intron 21 of 51)	48372.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	4.0	1.38	5.55	2.02	1.4	1.61	2.11	1.33	1.87
Merged-chr18-67205951-2	chr18	67205382	67206382	+	652.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024190, exon 1 of 1)	exon (NM_024190, exon 1 of 1)	523.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	175.62	229.93	123.94	159.23	183.8	146.29	149.98	147.68	55.58
Merged-chr16-17559102-2	chr16	17558576	17559576	+	652.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145435, intron 3 of 7)	intron (NM_001145435, intron 3 of 7)	2171.0	NM_029053	74685.0	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	9.15	5.53	3.7	14.17	8.4	4.82	6.34	0.88	3.75
Merged-chr2-144280223-2	chr2	144279678	144280678	+	652.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001289630, exon 5 of 5)	3' UTR (NM_001289630, exon 5 of 5)	9274.0	NM_001355688	74528.0	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintenance exonuclease 1	protein-coding	22.88	17.05	29.6	14.17	13.06	18.49	15.84	12.82	16.24
Merged-chr11-67021138-3	chr11	67020634	67021634	+	652.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4020.0	NM_001291042	338369.0	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	3.43	0.92	1.85	3.37	0.93	0.0	5.28	0.88	1.25
Merged-chr2-35539676-1	chr2	35539176	35540176	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18782.0	NM_001114125	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	3.43	3.23	1.85	4.72	5.6	0.8	0.0	1.77	3.12
Merged-chr1-34465625-2	chr1	34465110	34466110	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011206, intron 5 of 14)	L1MB5|LINE|L1	5864.0	NM_011206	19253.0	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	78.94	68.66	81.4	79.62	30.32	69.93	84.49	63.67	73.69
Merged-chr2-38209334-1	chr2	38208834	38209834	+	652.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146122, intron 2 of 21)	ORR1F|LTR|ERVL-MaLR	78050.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	7.44	14.28	10.17	8.77	7.0	11.25	12.67	7.07	9.37
Merged-chr7-125582920-2	chr7	125582418	125583418	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20511.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	12.01	12.44	23.12	14.84	11.2	14.47	19.01	5.31	17.49
Merged-chr16-20540585-1	chr16	20540085	20541085	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009679, intron 4 of 10)	intron (NM_009679, intron 4 of 10)	5105.0	NM_009679	11773.0	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	14.87	19.81	13.87	16.19	29.39	30.54	21.12	17.24	21.86
Merged-chr9-66980650-2	chr9	66980162	66981162	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5178.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	4.0	3.23	1.85	4.05	1.4	0.8	3.17	3.98	2.5
Merged-chr18-25554883-1	chr18	25554383	25555383	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	124865.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.0	0.46	0.0	0.67	1.87	1.61	1.06	1.77	2.5
Merged-chr1-86021760-2	chr1	86021235	86022235	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001122732)	promoter-TSS (NM_001122732)	-207.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	11.44	9.68	5.55	8.77	4.67	6.43	6.34	3.54	8.74
Merged-chr15-95794439-2	chr15	95793936	95794936	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	3593.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	150.45	159.89	122.09	155.19	125.02	143.88	151.03	170.68	91.81
Merged-chr4-41129600-2	chr4	41129084	41130084	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_139236	230082.0	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	1.72	5.07	9.25	3.37	1.4	3.22	6.34	3.54	3.75
Merged-chr11-117721962-3	chr11	117721455	117722455	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198022, exon 5 of 22)	exon (NM_198022, exon 5 of 22)	57693.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	19.45	17.51	26.82	21.59	16.79	24.92	17.96	16.8	8.12
Merged-chr8-83609312-2	chr8	83608820	83609820	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	772.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	41.19	35.48	24.05	31.04	27.52	20.9	22.18	22.99	12.49
Merged-chr8-119098418-1	chr8	119097918	119098918	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-246120.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	8.01	5.99	14.8	12.14	10.26	6.43	3.17	4.86	5.0
Merged-chr7-84197545-1	chr7	84197045	84198045	+	652.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45652.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	5.72	1.38	7.4	1.35	2.8	5.63	11.62	6.19	5.0
Merged-chr6-40430358-1	chr6	40429858	40430858	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356375, intron 1 of 8)	intron (NM_001356375, intron 1 of 8)	5777.0	NM_001356375	243780.0	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.57	0.92	3.7	4.72	1.4	5.63	6.34	3.98	2.5
Merged-chr4-116169241-2	chr4	116168780	116169780	+	652.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1682.0	NM_133681	66805.0	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	5.15	2.76	0.0	4.05	2.8	0.8	1.06	1.33	5.0
Merged-chrX-161514584-2	chrX	161514086	161515086	+	652.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-202450.0	NM_001103367	24004.0	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	11.44	6.91	3.7	11.47	4.2	8.04	7.39	9.29	9.37
Merged-chr5-139042556-1	chr5	139042056	139043056	+	652.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 7 of 10)	intron (NM_001359099, intron 7 of 10)	-47603.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.86	2.76	1.85	0.67	5.13	11.25	2.11	4.42	5.0
Merged-chr2-93497428-3	chr2	93496942	93497942	+	652.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34492.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	6.29	1.38	1.85	1.35	0.47	1.61	1.06	2.65	5.0
Merged-chr5-111269868-2	chr5	111269373	111270373	+	652.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 13 of 22)	intron (NM_001267622, intron 13 of 22)	-60824.0	NM_001301644	56305.0	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	5.15	2.3	3.7	0.67	0.93	1.61	0.0	0.88	1.25
Merged-chr10-82909468-3	chr10	82908953	82909953	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42827.0	NM_025499	66341.0	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	7.44	5.07	0.0	4.05	3.27	3.22	5.28	3.1	3.12
Merged-chr11-89005968-1	chr11	89005468	89006468	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	6565.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	23.45	28.11	21.27	27.66	20.06	48.23	17.96	20.78	15.61
Merged-chr7-80099924-3	chr7	80099431	80100431	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173011, intron 3 of 10)	ID4_|SINE|ID	15419.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	6.86	8.29	8.32	6.07	6.06	11.25	8.45	5.31	1.25
Merged-chr12-24952418-3	chr12	24951899	24952899	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026037, intron 9 of 12)	B3|SINE|B2	-22533.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	1.72	2.76	7.4	2.02	1.87	1.61	1.06	0.88	2.5
Merged-chr7-80406380-1	chr7	80405880	80406880	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081454)	promoter-TSS (NM_001081454)	-944.0	NM_001081454	18550.0	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	3.43	5.53	7.4	2.7	1.87	0.0	8.45	3.98	7.49
Merged-chr5-20865422-1	chr5	20864922	20865922	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172992, intron 1 of 17)	intron (NM_172992, intron 1 of 17)	16702.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	34.32	49.76	37.92	49.93	63.91	45.01	83.44	84.9	47.46
Merged-chr5-124532129-1	chr5	124531629	124532629	+	652.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021430)	promoter-TSS (NM_021430)	-738.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	89.81	120.73	108.22	85.69	81.64	94.85	115.12	160.06	96.18
Merged-chr11-62643090-3	chr11	62642575	62643575	+	652.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198861, intron 1 of 3)	intron (NM_198861, intron 1 of 3)	4974.0	NM_001357955	192976.0	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	9.72	4.61	3.7	8.77	3.27	3.22	6.34	1.33	1.87
Merged-chr9-57940124-3	chr9	57939654	57940654	+	652.266663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011352)	promoter-TSS (NM_011352)	19.0	NM_011352	20361.0	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	5.15	1.84	2.77	3.37	0.47	3.22	3.17	3.54	0.0
Merged-chr8-82755172-2	chr8	82754638	82755638	+	652.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MMERVK10D3_LTR|LTR|ERVK	18988.0	NM_145600	30932.0	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	36.04	57.6	23.12	19.57	27.52	3.22	26.4	35.37	15.61
Merged-chr19-18716565-2	chr19	18716075	18717075	+	652.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177640, intron 1 of 1)	B3|SINE|B2	3339.0	NM_177640	225995.0	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	5.15	4.61	0.0	2.7	2.33	8.84	1.06	4.86	2.5
Merged-chr7-45471163-2	chr7	45470698	45471698	+	652.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4300.0	NM_007527	12028.0	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	8.01	6.45	3.7	3.37	7.93	6.43	10.56	7.96	2.5
Merged-chr8-22059910-2	chr8	22059437	22060437	+	652.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243161)	promoter-TSS (NM_001243161)	137.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	8.01	8.75	5.55	11.47	10.26	12.06	8.45	6.19	6.25
Merged-chr11-83570374-3	chr11	83569866	83570866	+	652.194458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8270.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	44.05	42.39	40.7	35.76	29.39	38.58	26.4	29.63	23.73
Merged-chr10-58378024-3	chr10	58377508	58378508	+	652.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201242, intron 1 of 9)	B2_Mm2|SINE|B2	6554.0	NM_201242	110829.0	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	7.44	5.99	5.55	8.1	2.8	3.22	7.39	2.21	0.0
Merged-chr8-115705940-2	chr8	115705451	115706451	+	652.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001025577, exon 1 of 1)	exon (NM_001025577, exon 1 of 1)	943.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	20.59	27.65	36.07	34.41	22.39	47.42	51.75	28.3	39.35
Merged-chr15-77757104-3	chr15	77756592	77757592	+	652.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357895)	promoter-TSS (NM_001357895)	-82.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.0	2.3	1.85	2.02	0.0	0.0	2.11	3.1	2.5
Merged-chr12-110706401-2	chr12	110705900	110706900	+	652.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10005.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	64.07	48.38	19.42	141.02	137.15	90.02	151.03	119.39	74.32
Merged-chr7-126749051-2	chr7	126748533	126749533	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-10593.0	NM_011952	26417.0	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	47.48	47.92	34.22	33.06	43.85	36.17	54.92	37.14	53.08
Merged-chr2-24297022-1	chr2	24296522	24297522	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5826.0	NM_153077	215274.0	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	1.72	3.69	0.0	5.4	1.87	4.82	3.17	4.42	1.25
Merged-chr9-53376931-2	chr9	53376420	53377420	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176846, exon 6 of 6)	exon (NM_176846, exon 6 of 6)	-7103.0	NM_212445	68304.0	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	6.86	4.61	4.62	7.42	4.2	1.61	6.34	4.42	6.25
Merged-chr2-148877192-1	chr2	148876692	148877692	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1680.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	20.59	39.63	34.22	25.64	19.13	44.21	25.35	22.11	34.97
Merged-chr9-48467068-3	chr9	48466577	48467577	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	12733.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	3.43	6.91	14.8	9.45	1.87	3.22	2.11	3.54	9.99
Merged-chr10-60082594-1	chr10	60082094	60083094	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026937, intron 9 of 10)	ORR1F|LTR|ERVL-MaLR	-23663.0	NM_052994	94214.0	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	4.58	6.45	4.62	3.37	1.4	1.61	5.28	3.98	2.5
Merged-chr4-40233430-1	chr4	40232930	40233930	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172689, intron 2 of 17)	BGLII|LTR|ERVK	6395.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	14.3	11.06	11.1	12.82	8.86	16.88	7.39	7.96	7.49
Merged-chr5-81044648-1	chr5	81044148	81045148	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198702, intron 1 of 27)	L1MA5|LINE|L1	23055.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	12.01	23.96	18.5	18.22	18.66	12.86	6.34	13.71	5.62
Merged-chr1-138174839-1	chr1	138174339	138175339	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	287.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	415.88	606.85	246.04	355.58	490.77	237.92	380.23	538.12	222.96
Merged-chr9-44269302-1	chr9	44268802	44269802	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163742)	promoter-TSS (NM_001163742)	-703.0	NM_001163742	270151.0	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	14.87	10.6	11.1	14.17	11.2	19.29	16.9	10.17	11.87
Merged-chr1-152555578-1	chr1	152555078	152556078	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 5 of 17)	intron (NM_016846, intron 5 of 17)	69639.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	101.83	85.25	77.7	74.22	74.17	93.24	73.93	67.21	68.7
Merged-chr11-54711123-1	chr11	54710623	54711623	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76580.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.43	5.53	9.25	8.77	4.2	3.22	5.28	3.1	6.25
Merged-chr1-125426538-1	chr1	125426038	125427038	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	URR1A|DNA|hAT-Charlie	9189.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	29.17	36.4	19.42	39.81	37.32	32.96	52.81	38.03	22.48
Merged-chr4-24575743-1	chr4	24575243	24576243	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149739, intron 14 of 24)	L2|LINE|L2	79292.0	NM_199467	212377.0	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	2.29	3.69	1.85	3.37	0.93	1.61	2.11	1.33	7.49
Merged-chr2-145898684-1	chr2	145898184	145899184	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4557.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	16.02	6.91	15.72	8.1	11.66	9.65	3.17	2.21	3.75
Merged-chr17-26231620-1	chr17	26231120	26232120	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	B4A|SINE|B4	12622.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	128.71	121.19	113.77	162.61	117.56	137.45	166.88	223.29	93.68
Merged-chr13-102722531-2	chr13	102722025	102723025	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	28967.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	2.86	5.07	0.0	1.35	2.8	3.22	4.22	2.65	1.25
Merged-chr15-101237072-1	chr15	101236572	101237572	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11886.0	NR_045328	380977.0	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	2.29	1.84	5.55	3.37	0.93	0.0	2.11	0.88	6.25
Merged-chr10-24621786-3	chr10	24621282	24622282	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamGypLTR3a|LTR|Gypsy	26340.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.86	1.84	0.0	4.72	4.2	2.41	3.17	5.31	12.49
Merged-chr5-88791737-1	chr5	88791237	88792237	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	26724.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	7.44	3.69	5.55	2.7	1.4	0.0	0.0	2.21	4.37
Merged-chr7-128139720-1	chr7	128139220	128140220	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021334, intron 14 of 29)	MTD|LTR|ERVL-MaLR	10152.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	6.86	2.3	3.7	8.77	2.8	5.63	5.28	2.21	2.5
Merged-chr10-87863447-1	chr10	87862947	87863947	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	2336.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	32.04	30.41	17.57	39.13	38.25	52.25	46.47	59.25	35.6
Merged-chr15-78383595-1	chr15	78383095	78384095	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163613, intron 3 of 4)	ORR1F|LTR|ERVL-MaLR	5174.0	NM_001163613	73376.0	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	1.72	0.92	0.0	2.7	1.4	4.82	2.11	0.44	3.75
Merged-chr11-100714703-1	chr11	100714203	100715203	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029307)	TTS (NM_029307)	853.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	21.17	23.96	27.75	16.19	15.86	21.7	28.52	26.53	14.99
Merged-chr10-13443738-1	chr10	13443238	13444238	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	30658.0	NM_001195065	215789.0	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	4.0	5.99	11.1	4.72	6.06	4.02	8.45	0.88	1.25
Merged-chr14-63846053-1	chr14	63845553	63846553	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14259.0	NM_028228	72400.0	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	1.72	6.91	3.7	2.7	4.2	3.22	2.11	0.44	3.75
Merged-chr1-165845173-1	chr1	165844673	165845673	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113391, intron 1 of 7)	CpG	56492.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	4.0	0.92	0.92	4.72	4.67	0.0	7.39	3.98	2.5
Merged-chr7-100685828-2	chr7	100685321	100686321	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20814.0	NM_001362169	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	4.58	2.3	3.7	4.72	2.33	4.02	2.11	2.21	5.0
Merged-chr2-84642268-1	chr2	84641768	84642768	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	PB1D10|SINE|Alu	7212.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	20.59	39.63	21.27	17.54	27.52	23.31	46.47	34.49	42.47
Merged-chr18-38422563-1	chr18	38422063	38423063	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	3656.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	26.89	21.66	18.5	25.64	18.19	16.88	27.46	23.43	18.11
Merged-chr10-85387927-1	chr10	85387427	85388427	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028709, exon 1 of 17)	exon (NM_028709, exon 1 of 17)	1113.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.14	0.46	5.55	0.67	0.93	4.02	48.58	28.3	12.49
Merged-chr9-122957571-2	chr9	122957073	122958073	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010620, intron 1 of 34)	MLTR14|LTR|ERV1	6492.0	NM_010620	209737.0	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	29.75	30.87	43.47	28.34	22.86	18.49	53.87	53.06	30.6
Merged-chr10-17478878-1	chr10	17478378	17479378	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-244350.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	11.44	5.53	7.4	6.75	3.73	4.82	3.17	3.54	6.25
Merged-chr2-128179963-1	chr2	128179463	128180463	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	52388.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.58	4.61	5.55	4.05	3.27	1.61	5.28	0.88	1.87
Merged-chr16-89986176-1	chr16	89985676	89986676	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11477.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	1.72	0.46	9.25	1.35	7.46	1.61	5.28	2.21	3.75
Merged-chr10-96365430-1	chr10	96364930	96365930	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	139223.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.86	6.91	11.1	10.12	2.33	8.84	8.45	4.42	6.25
Merged-chr14-77536923-1	chr14	77536423	77537423	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253759, intron 7 of 19)	intron (NM_001253759, intron 7 of 19)	-30055.0	NR_033141	629678.0	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	9.72	8.75	10.17	8.77	7.0	8.04	3.17	1.77	1.25
Merged-chr19-37499520-1	chr19	37499020	37500020	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	34266.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	5.15	2.3	3.7	3.37	1.87	4.02	25.35	22.99	7.49
Merged-chr6-8410249-1	chr6	8409749	8410749	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	98912.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.58	0.46	3.7	6.75	3.73	12.06	7.39	3.1	3.75
Merged-chr16-93913570-1	chr16	93913070	93914070	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15997.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	8.58	4.15	5.55	13.49	6.53	12.86	143.64	158.3	101.8
Merged-chr5-99325394-1	chr5	99324894	99325894	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	(TG)n|Simple_repeat|Simple_repeat	-72467.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	249.42	275.55	145.22	254.37	195.93	168.8	195.39	188.36	97.43
Merged-chr14-64867113-2	chr14	64866635	64867635	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 4 of 9)	intron (NM_177338, intron 4 of 9)	82722.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	58.92	61.75	46.25	38.46	38.25	24.92	46.47	57.04	46.22
Merged-chr8-83737556-1	chr8	83737056	83738056	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011925, intron 1 of 19)	B3|SINE|B2	3755.0	NM_001163029	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	160.18	150.68	123.94	94.46	74.17	114.94	149.98	183.06	119.28
Merged-chr11-118490172-1	chr11	118489672	118490672	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359368)	TTS (NM_001359368)	13340.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.72	12.44	7.4	19.57	20.99	30.54	7.39	8.4	6.87
Merged-chr19-53553036-1	chr19	53552536	53553536	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23718.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.57	2.3	1.85	2.7	4.2	3.22	2.11	2.65	3.12
Merged-chr1-171263021-1	chr1	171262521	171263521	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172845)	TTS (NM_172845)	-7307.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	14.3	6.91	0.0	12.14	5.13	0.0	3.17	0.88	9.99
Merged-chr8-75101923-1	chr8	75101423	75102423	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7586.0	NM_001302540	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	8.58	11.98	14.8	10.8	10.26	24.11	6.34	7.96	23.11
Merged-chr16-50613143-1	chr16	50612643	50613643	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040566, intron 3 of 4)	intron (NR_040566, intron 3 of 4)	-21989.0	NM_027046	69339.0	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	9.15	5.07	1.85	5.4	5.6	3.22	7.39	9.29	11.24
Merged-chr5-97126182-1	chr5	97125682	97126682	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14586.0	NM_001359913	231474.0	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	1.14	1.38	1.85	0.0	3.73	4.82	2.11	3.1	5.62
Merged-chr14-69795536-1	chr14	69795036	69796036	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153514, intron 6 of 9)	intron (NM_153514, intron 6 of 9)	10009.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	2.29	1.84	2.77	2.02	0.0	0.0	2.11	2.21	0.0
Merged-chr16-35935925-1	chr16	35935425	35936425	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013371, intron 2 of 4)	RMER20C_Mm|LTR|ERVK	-2545.0	NM_030253	80285.0	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.43	11.52	12.95	9.45	9.8	13.66	15.84	14.59	13.12
Merged-chr19-21077982-1	chr19	21077482	21078482	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26728.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	1.14	2.76	0.0	4.05	1.4	6.43	1.06	0.88	1.87
Merged-chr1-130987581-1	chr1	130987081	130988081	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-32264.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	3.43	0.92	5.55	0.67	1.87	3.22	3.17	1.33	2.5
Merged-chr9-118645057-1	chr9	118644557	118645557	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	38348.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	57.78	52.53	74.92	74.22	62.51	96.45	42.25	46.87	43.72
Merged-chr10-94728341-1	chr10	94727841	94728841	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029852, intron 4 of 15)	B1_Mm|SINE|Alu	39551.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	12.59	20.74	14.8	12.14	22.39	38.58	14.79	24.32	13.74
Merged-chr13-69536014-1	chr13	69535514	69536514	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-2150.0	NM_001169131	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	50.34	49.3	24.97	70.17	69.98	70.73	20.07	22.99	3.75
Merged-chr1-131378132-1	chr1	131377632	131378632	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 4 of 22)	intron (NM_001081011, intron 4 of 22)	-98569.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	11.44	11.06	23.12	15.52	12.13	10.45	12.67	9.73	9.99
Merged-chr7-144980002-1	chr7	144979502	144980502	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40077.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.29	2.76	2.77	5.4	4.2	3.22	5.28	0.0	4.37
Merged-chr6-136513791-1	chr6	136513291	136514291	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-5060.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	18.31	16.13	20.35	1.35	1.4	3.22	27.46	10.61	21.86
Merged-chr18-5139148-1	chr18	5138648	5139648	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26583.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	2.29	3.23	4.62	2.7	2.33	3.22	1.06	5.31	6.25
Merged-chr2-157075862-1	chr2	157075362	157076362	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 1 of 14)	intron (NM_001164663, intron 1 of 14)	3403.0	NM_001164663	320706.0	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	15.45	13.82	13.87	10.8	11.66	17.68	9.51	7.96	9.37
Merged-chr18-81588054-2	chr18	81587552	81588552	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	404028.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	5.15	4.61	3.7	3.37	2.33	3.22	13.73	7.52	8.74
Merged-chr16-65351221-1	chr16	65350721	65351721	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-169408.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	3.43	2.76	5.55	1.35	5.6	9.65	6.34	6.63	2.5
Merged-chr17-28553273-2	chr17	28552760	28553760	+	652.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001034871)	TTS (NM_001034871)	3773.0	NM_001034871	328788.0	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	2.86	2.3	0.92	0.67	1.4	1.61	2.11	0.88	0.0
Merged-chr5-140396733-1	chr5	140396233	140397233	+	652.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-7425.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	8.58	4.15	0.0	4.05	3.73	2.41	5.28	2.65	2.5
Merged-chr8-68735193-2	chr8	68734631	68735631	+	652.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252623)	promoter-TSS (NM_001252623)	15.0	NM_001252623	234356.0	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	6.29	1.84	7.4	4.72	0.47	1.61	6.34	1.77	1.25
Merged-chr9-77596564-2	chr9	77596064	77597064	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40168.0	NM_172925	244923.0	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	2.29	1.84	5.55	5.4	0.93	0.0	4.22	1.33	0.0
Merged-chr4-109245802-2	chr4	109245301	109246301	+	651.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033226, intron 5 of 7)	intron (NM_001033226, intron 5 of 7)	10169.0	NM_001033226	108802.0	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	11.44	4.61	8.32	11.47	5.13	18.49	4.22	1.77	6.25
Merged-chr7-101381723-2	chr7	101381212	101382212	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040112, intron 1 of 30)	intron (NM_001040112, intron 1 of 30)	3590.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	251.7	241.91	147.99	215.91	163.28	176.03	219.69	221.97	176.74
Merged-chr8-105303585-2	chr8	105303084	105304084	+	651.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-2017.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	24.03	19.35	14.8	19.57	11.66	14.47	41.19	31.84	34.35
Merged-chr3-31340782-1	chr3	31340282	31341282	+	651.833313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-30463.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	5.72	5.07	0.92	2.02	0.0	1.61	0.0	0.44	0.62
Merged-chr9-7814086-2	chr9	7813573	7814573	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	22733.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	2.86	10.6	2.77	15.52	3.27	4.82	4.22	2.65	11.24
Merged-chr7-67307332-2	chr7	67306833	67307833	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	intron (NM_001357324, intron 3 of 11)	65525.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	9.72	18.43	8.32	13.49	16.33	16.88	13.73	22.11	9.99
Merged-chr6-67069934-3	chr6	67069468	67070468	+	651.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040278, intron 4 of 6)	intron (NR_040278, intron 4 of 6)	-32561.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	11.44	13.36	3.7	12.82	7.93	8.04	13.73	3.98	6.87
Merged-chr2-180276964-2	chr2	180276441	180277441	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_173031)	TTS (NM_173031)	-3476.0	NM_145851	252966.0	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	2.86	0.46	0.0	5.4	1.87	7.23	5.28	2.65	0.62
Merged-chr8-109707061-2	chr8	109706558	109707558	+	651.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286393, intron 2 of 7)	intron (NM_001286393, intron 2 of 7)	1039.0	NM_029468	75871.0	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	5.72	3.23	7.4	5.4	3.73	4.82	3.17	3.54	5.0
Merged-chr7-143506062-3	chr7	143505538	143506538	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3514.0	NM_009434	22113.0	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	5.15	3.69	4.62	2.02	1.87	1.61	1.06	0.44	1.25
Merged-chr11-30676317-3	chr11	30675846	30676846	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MamRep1527|LTR|LTR	-26950.0	NM_029344	75572.0	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	4.58	3.69	3.7	2.02	4.67	4.02	1.06	4.86	2.5
Merged-chr11-3921787-3	chr11	3921362	3922362	+	651.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130458, intron 8 of 9)	intron (NM_001130458, intron 8 of 9)	-7198.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	2.29	4.15	12.95	6.07	2.33	14.47	5.28	5.31	21.86
Merged-chr8-120103735-1	chr8	120103235	120104235	+	651.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2263.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	153.31	180.63	116.54	221.98	192.2	229.08	212.29	279.45	140.52
Merged-chr13-41084657-2	chr13	41084150	41085150	+	651.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4944.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	2.86	2.76	0.0	3.37	1.4	8.84	9.51	1.33	5.0
Merged-chr14-121589562-2	chr14	121589063	121590063	+	651.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081039, intron 38 of 53)	intron (NM_001081039, intron 38 of 53)	-84309.0	NM_053079	56643.0	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	4.0	4.15	0.92	2.7	2.8	5.63	3.17	0.44	2.5
Merged-chr4-116789149-3	chr4	116788660	116789660	+	651.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146151, intron 4 of 10)	intron (NM_146151, intron 4 of 10)	18399.0	NM_026654	68276.0	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	12.01	21.2	41.62	25.64	17.73	23.31	21.12	16.8	7.49
Merged-chr12-13215083-3	chr12	13214556	13215556	+	651.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34118.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	2.86	2.76	0.0	6.75	1.4	1.61	2.11	1.33	5.0
Merged-chr14-17916716-2	chr14	17916216	17917216	+	651.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-64928.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.15	10.14	5.55	8.77	8.86	3.22	7.39	7.52	2.5
Merged-chr17-34591649-3	chr17	34591154	34592154	+	651.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_017463)	promoter-TSS (NM_017463)	-817.0	NM_017463	18515.0	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	40.04	42.85	49.02	39.81	27.99	67.52	52.81	40.68	52.46
Merged-chr3-137611362-3	chr3	137610867	137611867	+	651.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12305.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	21.74	17.05	7.4	14.84	16.79	8.04	10.56	10.61	6.87
Merged-chr12-70113605-3	chr12	70113166	70114166	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1631.0	NR_104397	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	21.74	18.43	11.1	17.54	15.39	18.49	30.63	27.86	15.61
Merged-chr10-127626682-3	chr10	127626217	127627217	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-5569.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	10.3	4.61	3.7	7.42	3.73	0.0	5.28	3.98	3.12
Merged-chr11-69465903-3	chr11	69465395	69466395	+	651.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 39 of 85)	intron (NM_001081330, intron 39 of 85)	-52220.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	4.58	2.3	3.7	5.4	2.33	3.22	7.39	2.65	2.5
Merged-chr6-125481249-2	chr6	125480765	125481765	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	13495.0	NM_007657	12527.0	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	16.02	12.9	15.72	12.82	9.8	8.84	26.4	20.34	14.99
Merged-chr19-11851125-1	chr19	11850625	11851625	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4826.0	NM_001011524	258227.0	Mm.377385	NM_001011524	ENSMUSG00000060556	Olfr1418	MOR266-5	olfactory receptor 1418	protein-coding	8.01	9.22	11.1	7.42	5.6	11.25	2.11	3.98	1.25
Merged-chr15-25525598-2	chr15	25525097	25526097	+	651.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96953.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.0	10.14	1.85	2.7	4.67	3.22	6.34	9.29	3.75
Merged-chr7-98968194-1	chr7	98967694	98968694	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	intron (NM_178635, intron 12 of 14)	129349.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	6.86	1.84	1.85	10.8	4.67	9.65	4.22	3.98	1.25
Merged-chr11-4095278-2	chr11	4094795	4095795	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_026443, exon 1 of 4)	5' UTR (NM_026443, exon 1 of 4)	136.0	NM_026443	67900.0	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	33.75	36.4	24.97	33.74	46.18	36.97	43.3	39.35	15.61
Merged-chr11-101971625-1	chr11	101971125	101972125	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028207, exon 3 of 3)	3' UTR (NM_028207, exon 3 of 3)	-4610.0	NM_024449	74499.0	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	48.62	63.59	40.7	83.66	56.91	53.05	61.26	57.48	44.34
Merged-chr6-99026314-2	chr6	99025811	99026811	+	651.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	1987.0	NM_001197322	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	12.59	17.51	7.4	12.14	4.67	0.0	8.45	10.61	8.12
Merged-chr10-88304506-1	chr10	88304006	88305006	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52569.0	NM_027878	71712.0	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	3.43	0.46	3.7	3.37	0.93	4.82	4.22	1.33	5.0
Merged-chr10-68714559-2	chr10	68714060	68715060	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-9186.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.29	5.53	1.85	3.37	3.73	3.22	12.67	6.19	13.12
Merged-chr9-118640098-1	chr9	118639598	118640598	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 4 of 27)	intron (NM_133721, intron 4 of 27)	33389.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	10.87	15.67	22.2	22.94	6.53	24.11	27.46	21.22	26.85
Merged-chr2-62639955-1	chr2	62639455	62640455	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164477, intron 1 of 14)	intron (NM_001164477, intron 1 of 14)	6300.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	12.59	16.13	5.55	22.94	11.2	19.29	26.4	16.36	16.86
Merged-chr3-105849539-1	chr3	105849039	105850039	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21319.0	NM_027025	69296.0	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik|Tg(H2-K-CALR*)del52Shmd	transmembrane and immunoglobulin domain containing 3	protein-coding	12.59	6.45	7.4	9.45	7.0	8.04	8.45	9.29	4.37
Merged-chr11-75291086-2	chr11	75290586	75291586	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57297.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	5.72	0.46	3.7	8.1	2.8	0.0	4.22	2.65	0.62
Merged-chr13-119755742-2	chr13	119755183	119756183	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175538, intron 1 of 3)	CpG	199.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	6.86	0.46	1.85	2.7	4.2	1.61	8.45	1.33	7.49
Merged-chr18-69439529-1	chr18	69439029	69440029	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	93369.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.57	1.84	0.0	4.72	2.33	3.22	1.06	5.31	3.75
Merged-chr10-67113107-2	chr10	67112605	67113605	+	651.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus1|LINE|L1	-14153.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	44.05	26.26	13.87	51.28	16.79	32.15	32.74	15.03	13.74
Merged-chr10-66873594-2	chr10	66873096	66874096	+	651.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46788.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	8.58	11.52	12.95	10.8	9.33	2.41	4.22	3.98	8.74
Merged-chr5-100821659-1	chr5	100821159	100822159	+	651.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172405)	promoter-TSS (NM_172405)	-724.0	NM_172405	70681.0	Mm.486560	NM_172405	ENSMUSG00000035234	Abraxas1	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98|Fam175a	BRCA1 A complex subunit	protein-coding	5.72	7.83	2.77	4.05	6.53	7.23	4.22	7.96	7.49
Merged-chr3-95624342-1	chr3	95623842	95624842	+	651.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019561)	promoter-TSS (NM_019561)	-638.0	NM_019561	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	124.71	111.51	78.62	94.46	86.77	90.83	119.35	108.33	61.2
Merged-chr9-54963782-1	chr9	54963282	54964282	+	651.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-12828.0	NM_145229	246735.0	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0.57	2.3	3.7	3.37	2.8	1.61	3.17	3.98	6.25
Merged-chr7-97125524-3	chr7	97124985	97125985	+	651.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	43734.0	NM_010248	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	68.65	93.08	78.62	79.62	62.98	63.5	97.17	136.19	56.21
Merged-chr3-109747779-3	chr3	109747292	109748292	+	651.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	173785.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	8.58	5.07	0.0	3.37	2.33	0.0	2.11	2.21	1.25
Merged-chr8-108315313-3	chr8	108314777	108315777	+	651.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	269400.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	12.59	11.98	4.62	14.84	6.06	10.45	10.56	4.86	14.36
Merged-chr9-106365527-2	chr9	106365027	106366027	+	651.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3105.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	5.72	6.91	7.4	6.07	6.53	20.9	10.56	5.31	14.36
Merged-chr9-7766792-2	chr9	7766281	7767281	+	651.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152989, intron 1 of 5)	intron (NR_152989, intron 1 of 5)	2616.0	NR_152989	71929.0	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	6.29	5.53	7.4	5.4	3.73	3.22	7.39	2.21	3.75
Merged-chrX-52575749-2	chrX	52575233	52576233	+	651.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045367)	promoter-TSS (NR_045367)	-110.0	NR_045367	100504594.0	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	4.0	6.91	12.95	5.4	4.67	4.02	7.39	3.1	6.25
Merged-chr18-52598448-2	chr18	52597933	52598933	+	651.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17482.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	9.72	6.45	1.85	3.37	1.4	3.22	10.56	5.31	1.25
Merged-chr3-88148488-3	chr3	88147973	88148973	+	651.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	6101.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	40.04	44.7	29.6	25.64	33.59	45.01	46.47	33.6	41.22
Merged-chr4-58439820-2	chr4	58439334	58440334	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	ORR1D-int|LTR|ERVL-MaLR	1264.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	6.86	6.45	7.4	1.35	0.93	0.8	7.39	7.07	7.49
Merged-chr8-64896958-2	chr8	64896464	64897464	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-47040.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.0	1.84	0.0	3.37	2.8	0.8	3.17	0.0	1.25
Merged-chr7-48775654-2	chr7	48775162	48776162	+	651.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13341.0	NM_028031	243983.0	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	5.15	4.61	4.62	7.42	2.33	3.22	5.28	6.63	1.25
Merged-chr8-123189006-2	chr8	123188510	123189510	+	651.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007876, intron 1 of 10)	intron (NM_007876, intron 1 of 10)	2775.0	NM_007876	13479.0	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	5.72	5.53	9.25	11.47	2.33	4.02	9.51	6.19	9.37
Merged-chr7-97079313-2	chr7	97078811	97079811	+	651.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2440.0	NM_001162477	14389.0	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	26.89	25.8	7.4	14.17	14.0	9.65	25.35	22.99	21.86
Merged-chr6-97211303-3	chr6	97210797	97211797	+	651.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	505.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	127.57	121.19	105.44	112.0	107.3	127.8	99.28	80.92	44.34
Merged-chr2-90613183-3	chr2	90612691	90613691	+	651.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32544.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	13.16	7.37	5.55	2.7	4.2	8.84	7.39	3.54	5.0
Merged-chr16-31907158-1	chr16	31906658	31907658	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26693.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	5.72	1.38	4.62	4.05	0.47	3.22	4.22	2.65	3.75
Merged-chr2-58574242-1	chr2	58573742	58574742	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	6908.0	NM_001289660	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	1.72	0.46	5.55	2.7	3.27	4.82	1.06	2.65	3.75
Merged-chr1-155025961-1	chr1	155025461	155026461	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	57303.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	4.0	2.3	3.7	4.72	3.73	1.61	3.17	0.44	3.12
Merged-chr11-105182270-1	chr11	105181770	105182770	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027956)	promoter-TSS (NR_027956)	743.0	NM_001294329	24086.0	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	237.4	254.81	317.26	223.33	215.06	315.09	294.68	203.84	184.86
Merged-chr15-34022148-2	chr15	34021661	34022661	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60558.0	NM_001357926	67154.0	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	1.72	3.23	5.55	2.7	0.0	8.04	3.17	1.33	2.5
Merged-chr3-104227701-1	chr3	104227201	104228201	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21B|LTR|ERVL	-7295.0	NM_001159354	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	4.58	3.69	2.77	4.05	3.73	3.22	3.17	0.44	3.75
Merged-chr1-191175716-1	chr1	191175216	191176216	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	7617.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	12.01	4.15	1.85	5.4	3.73	4.02	6.34	2.21	4.37
Merged-chr6-17727672-1	chr6	17727172	17728172	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	-15920.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	12.59	5.99	11.1	6.07	7.0	8.04	10.56	3.54	12.49
Merged-chr7-132786185-1	chr7	132785685	132786685	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212473, intron 1 of 4)	intron (NM_212473, intron 1 of 4)	750.0	NM_175268	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	8.58	9.68	7.4	16.87	11.2	6.43	0.0	0.44	1.25
Merged-chr17-31871087-1	chr17	31870587	31871587	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15283.0	NM_010831	17691.0	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	5.15	0.92	0.0	3.37	2.33	0.0	2.11	0.88	0.0
Merged-chr15-73069066-1	chr15	73068566	73069566	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7862.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	31.46	33.18	20.35	15.52	13.53	19.29	34.85	32.72	13.12
Merged-chr10-94055148-1	chr10	94054648	94055648	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	19147.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	1.72	7.83	1.85	10.8	6.53	6.43	19.01	19.01	12.49
Merged-chr3-86129959-1	chr3	86129459	86130459	+	651.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001082414, exon 15 of 15)	3' UTR (NM_001082414, exon 15 of 15)	8899.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	1.14	1.84	5.55	3.37	4.67	5.63	3.17	3.54	1.25
Merged-chr3-137753092-1	chr3	137752592	137753592	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30523.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	3.43	1.84	0.0	4.72	6.06	4.82	0.0	1.33	6.25
Merged-chr6-81372401-1	chr6	81371901	81372901	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	523262.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	2.29	5.53	0.0	1.35	3.73	4.02	3.17	3.54	5.0
Merged-chr11-98962432-1	chr11	98961932	98962932	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001176528, intron 1 of 7)	intron (NM_001176528, intron 1 of 7)	1961.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	15.45	12.9	11.1	16.19	5.6	15.27	19.01	7.07	5.62
Merged-chr11-118401225-1	chr11	118400725	118401725	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011150, intron 1 of 5)	intron (NM_011150, intron 1 of 5)	734.0	NM_011150	19039.0	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	96.11	85.25	74.0	86.36	106.36	75.56	78.16	85.78	47.46
Merged-chr5-30864527-1	chr5	30864027	30865027	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133350, intron 4 of 6)	intron (NM_133350, intron 4 of 6)	2720.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	5.72	4.15	3.7	9.45	13.06	5.63	5.28	6.19	2.5
Merged-chr15-74896477-2	chr15	74895993	74896993	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14789.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	3.43	4.15	1.85	1.35	2.8	1.61	2.11	3.1	11.24
Merged-chr17-67317067-1	chr17	67316567	67317567	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	MLT1E1A|LTR|ERVL-MaLR	37392.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	3.43	7.37	11.1	8.77	16.79	13.66	12.67	8.84	3.75
Merged-chr5-45580580-2	chr5	45580080	45581080	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021416, exon 5 of 16)	exon (NM_021416, exon 5 of 16)	-58695.0	NR_102378	319251.0	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	8.01	8.29	25.9	6.75	3.73	7.23	5.28	3.54	6.25
Merged-chr12-110711051-1	chr12	110710551	110711551	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14656.0	NM_010480	15519.0	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	7.44	3.69	8.32	5.4	3.27	0.8	5.28	4.86	5.0
Merged-chr2-167641585-2	chr2	167641103	167642103	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	-9598.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	11.44	4.61	3.7	5.4	4.67	5.63	7.39	2.65	8.74
Merged-chr9-77719175-1	chr9	77718675	77719675	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER58B|DNA|hAT-Charlie	-35360.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	12.59	7.83	1.85	3.37	1.4	4.82	2.11	1.33	0.0
Merged-chr19-56475038-2	chr19	56474550	56475550	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172641, intron 7 of 12)	intron (NM_172641, intron 7 of 12)	13413.0	NM_172641	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	4.0	2.76	3.7	4.05	4.2	1.61	4.22	3.1	5.0
Merged-chr1-39685987-1	chr1	39685487	39686487	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145660, intron 7 of 14)	intron (NM_001145660, intron 7 of 14)	-34805.0	NM_170597	263764.0	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	4.58	1.38	1.85	2.02	5.6	5.63	3.17	1.33	7.49
Merged-chr12-110373573-1	chr12	110373073	110374073	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-73606.0	NM_001135001	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	3.43	2.76	1.85	1.35	1.4	4.02	2.11	1.77	1.25
Merged-chr4-117199202-1	chr4	117198702	117199702	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPLTR1_Mm|LTR|ERVK	-16578.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.57	1.38	1.85	124.15	123.62	49.83	0.0	4.86	5.0
Merged-chr19-3586775-1	chr19	3586275	3587275	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008513, intron 21 of 22)	intron (NM_008513, intron 21 of 22)	-11026.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	6.29	5.99	8.32	8.77	8.86	8.04	5.28	0.88	5.0
Merged-chr15-5288685-1	chr15	5288185	5289185	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44498.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.58	4.15	5.55	2.7	1.87	4.82	1.06	2.65	1.25
Merged-chr7-128345107-2	chr7	128344605	128345605	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-46974.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	4.0	5.99	3.7	7.42	4.67	9.65	3.17	0.88	1.25
Merged-chr11-116102602-1	chr11	116102102	116103102	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7633.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	69.22	101.83	85.1	57.35	51.78	60.28	65.48	73.84	63.7
Merged-chrX-20307472-2	chrX	20306961	20307961	+	651.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15697.0	NM_177353	236727.0	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	6.29	4.61	0.92	8.1	11.66	1.61	8.45	3.1	0.62
Merged-chr6-46231320-1	chr6	46230820	46231820	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 9 of 23)	MLT1F-int|LTR|ERVL-MaLR	-1013076.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.86	2.3	1.85	2.02	1.87	1.61	1.06	4.42	2.5
Merged-chr3-104856276-1	chr3	104855776	104856776	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009797, intron 1 of 9)	ORR1B2|LTR|ERVL-MaLR	8229.0	NM_009797	12340.0	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1|capZ alpha-1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	17.16	18.89	24.05	21.59	12.13	8.04	23.24	23.88	12.49
Merged-chr7-90822332-1	chr7	90821832	90822832	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-268454.0	NM_011807	23859.0	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.0	1.84	1.85	1.35	3.27	1.61	0.0	2.21	5.0
Merged-chr16-38695417-1	chr16	38694917	38695917	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	MLT1D|LTR|ERVL-MaLR	17618.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.43	2.3	1.85	3.37	3.27	1.61	1.06	2.21	9.99
Merged-chr17-25919259-1	chr17	25918759	25919759	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	CpG	455.0	NM_139154	224624.0	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	91.53	62.21	40.7	102.56	66.71	55.46	88.72	72.52	49.96
Merged-chr12-76944882-1	chr12	76944382	76945382	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361663, intron 3 of 4)	intron (NM_001361663, intron 3 of 4)	17366.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	26.89	37.78	35.15	18.22	35.92	31.35	41.19	45.1	19.98
Merged-chr3-20023232-1	chr3	20022732	20023732	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	12078.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	6.86	2.76	0.92	4.72	3.73	3.22	10.56	6.63	11.24
Merged-chr10-122553270-1	chr10	122552770	122553770	+	651.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16621.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	4.58	4.15	1.85	7.42	6.06	1.61	2.11	2.65	0.0
Merged-chr2-131353600-3	chr2	131353108	131354108	+	650.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178607)	promoter-TSS (NM_178607)	-716.0	NM_178607	51902.0	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	26.31	17.51	12.02	29.01	18.66	16.88	21.12	19.9	4.37
Merged-chr7-138840907-3	chr7	138840411	138841411	+	650.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045483, intron 1 of 1)	intron (NM_001045483, intron 1 of 1)	5356.0	NM_001045483	69546.0	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.57	2.76	0.0	5.4	1.87	0.0	3.17	3.1	2.5
Merged-chr3-96503255-2	chr3	96502754	96503754	+	650.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21931.0	NM_027126	69585.0	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	17.16	15.67	11.1	17.54	13.53	17.68	20.07	26.53	16.86
Merged-chr17-15825625-2	chr17	15825167	15826167	+	650.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178615, intron 1 of 2)	CpG	919.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	57.21	32.72	54.57	42.51	33.12	36.97	47.53	49.08	42.47
Merged-chr4-43530801-2	chr4	43530300	43531300	+	650.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011602)	TTS (NM_011602)	-7246.0	NM_001277875	22004.0	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	5.72	8.29	11.1	10.8	4.67	15.27	11.62	9.29	17.49
Merged-chr13-43739793-1	chr13	43739293	43740293	+	650.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23002.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	5.72	3.23	1.85	4.72	5.13	1.61	0.0	0.88	5.0
Merged-chr9-41121211-3	chr9	41120697	41121697	+	650.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	36865.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	23.45	7.83	0.0	16.87	10.73	21.7	23.24	11.94	19.36
Merged-chr2-77282320-3	chr2	77281828	77282828	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1736.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	29.75	22.58	10.17	14.17	12.13	11.25	16.9	12.38	19.36
Merged-chr8-13154344-2	chr8	13153843	13154843	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-4818.0	NM_001317353	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	45.19	65.89	38.85	38.46	38.25	71.54	41.19	44.22	44.34
Merged-chr19-43624143-2	chr19	43623638	43624638	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11813.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	5.72	0.92	5.55	4.72	0.93	1.61	4.22	5.31	4.37
Merged-chr5-114379333-2	chr5	114378811	114379811	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159941, intron 1 of 6)	intron (NM_001159941, intron 1 of 6)	1194.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	10.87	13.36	6.47	22.27	12.6	21.7	12.67	6.19	12.49
Merged-chr17-71286894-1	chr17	71286394	71287394	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357337, intron 2 of 7)	intron (NM_001357337, intron 2 of 7)	24117.0	NM_001357337	246707.0	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	131.57	135.01	76.77	165.31	162.34	162.37	82.38	72.07	37.47
Merged-chr4-132039062-2	chr4	132038564	132039564	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	LTR104_Mam|LTR|Gypsy	10014.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	63.5	82.94	75.85	85.01	78.37	75.56	81.33	78.26	62.45
Merged-chr9-31252537-1	chr9	31252037	31253037	+	650.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18864.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	5.15	5.53	2.77	7.42	6.06	10.45	5.28	4.42	3.75
Merged-chr13-44292629-4	chr13	44292113	44293113	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76126.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	42.33	33.64	9.25	62.07	52.25	32.96	65.48	43.33	19.98
Merged-chr9-44126289-3	chr9	44125791	44126791	+	650.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152189, intron 1 of 1)	intron (NR_152189, intron 1 of 1)	8194.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	9.72	5.07	6.47	10.8	3.27	3.22	8.45	2.65	3.75
Merged-chr1-66814868-2	chr1	66814379	66815379	+	650.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357156, intron 1 of 14)	intron (NM_001357156, intron 1 of 14)	2716.0	NM_177645	68691.0	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	100.68	156.67	96.2	112.0	112.43	93.24	141.53	163.16	98.68
Merged-chr7-104353980-1	chr7	104353480	104354480	+	650.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175677)	promoter-TSS (NM_175677)	-622.0	NM_001146007	319236.0	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	66.93	69.58	49.02	70.85	85.84	46.62	50.7	63.23	19.98
Merged-chr10-95476148-1	chr10	95475648	95476648	+	650.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25801.0	NM_001359476	67270.0	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	1.72	3.23	0.0	3.37	2.8	4.02	5.28	2.21	3.75
Merged-chr13-64110522-1	chr13	64110022	64111022	+	650.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	18808.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	1.14	1.38	3.7	3.37	1.87	6.43	11.62	5.75	3.75
Merged-chr14-70206007-2	chr14	70205512	70206512	+	650.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271407)	promoter-TSS (NM_001271407)	10.0	NM_001271407	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	25.17	27.65	5.55	85.01	104.5	71.54	8.45	9.73	8.74
Merged-chr11-54617863-2	chr11	54617365	54618365	+	650.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 7 of 28)	MLT1A0|LTR|ERVL-MaLR	21719.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	18.88	15.67	14.8	14.84	7.0	17.68	10.56	24.32	14.36
Merged-chr7-49753294-2	chr7	49752807	49753807	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5799.0	NM_001146053	53415.0	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	10.87	3.69	5.55	3.37	4.2	6.43	8.45	3.1	8.12
Merged-chr18-30046176-1	chr18	30045676	30046676	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-226689.0	NM_181414	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	2.86	2.3	3.7	2.02	2.33	0.0	2.11	2.65	1.25
Merged-chr8-60897421-1	chr8	60896921	60897921	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028299, intron 4 of 7)	LTR67B|LTR|ERVL	7028.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	5.15	6.91	0.0	2.02	4.67	6.43	5.28	2.21	6.87
Merged-chr6-142735531-2	chr6	142735029	142736029	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21157.0	NM_009908	12764.0	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	6.86	5.07	3.7	2.02	4.2	0.0	5.28	0.0	1.25
Merged-chr3-122274962-2	chr3	122274461	122275461	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153806, intron 1 of 6)	intron (NM_153806, intron 1 of 6)	547.0	NM_153806	99480.0	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	138.44	145.15	114.69	110.65	139.02	127.8	129.91	122.48	67.45
Merged-chr7-16010053-2	chr7	16009545	16010545	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10550.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	17.73	16.13	17.57	8.77	5.13	11.25	22.18	32.28	13.74
Merged-chr19-7438500-2	chr19	7438021	7439021	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	15948.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	20.02	26.73	9.25	16.87	14.93	20.9	19.01	29.18	16.24
Merged-chr1-151820743-1	chr1	151820243	151821243	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001311166, exon 20 of 20)	3' UTR (NM_001311166, exon 20 of 20)	65369.0	NM_001311166	66967.0	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	22.88	15.67	14.8	20.24	5.13	10.45	19.01	14.59	12.49
Merged-chr7-16243379-1	chr7	16242879	16243879	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176912, intron 1 of 1)	intron (NM_176912, intron 1 of 1)	775.0	NM_176912	319430.0	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	72.65	71.42	94.35	65.45	56.91	74.75	76.05	82.69	61.2
Merged-chr18-4312099-1	chr18	4311599	4312599	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40854.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	10.3	9.68	8.32	14.84	5.13	8.04	7.39	4.42	6.25
Merged-chr6-149207277-2	chr6	149206776	149207776	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18564.0	NM_001113424	232566.0	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	6.86	6.91	12.95	8.77	12.6	14.47	14.79	8.84	13.74
Merged-chr7-24407097-2	chr7	24406539	24407539	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028047, intron 5 of 13)	intron (NM_028047, intron 5 of 13)	7411.0	NM_028047	71997.0	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.86	5.53	3.7	2.7	1.4	11.25	1.06	5.31	2.5
Merged-chr7-65371139-2	chr7	65370658	65371658	+	650.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163574)	promoter-TSS (NM_001163574)	86.0	NM_001163574	21872.0	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	4.0	1.38	0.0	4.05	0.47	4.02	6.34	0.0	1.87
Merged-chr10-11369977-1	chr10	11369477	11370477	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010146, intron 1 of 3)	ORR1G|LTR|ERVL-MaLR	26532.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	2.86	4.15	0.0	10.12	8.86	3.22	3.17	2.21	1.25
Merged-chr8-35709212-1	chr8	35708712	35709712	+	650.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117347.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.58	2.76	0.0	5.4	0.93	1.61	9.51	3.54	6.25
Merged-chr9-44249686-2	chr9	44249191	44250191	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_133226, exon 6 of 11)	exon (NM_133226, exon 6 of 11)	1773.0	NM_133226	170761.0	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	5.72	2.3	7.4	4.05	1.87	3.22	4.22	0.44	0.0
Merged-chr4-128824401-1	chr4	128823901	128824901	+	650.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18289.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	5.15	1.38	5.55	3.37	3.27	12.86	5.28	6.63	6.87
Merged-chr14-76763044-2	chr14	76762534	76763534	+	650.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_153763)	TTS (NR_153763)	2903.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	10.3	5.53	9.25	5.4	2.33	0.0	2.11	1.77	3.75
Merged-chr8-105826582-3	chr8	105826092	105827092	+	650.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145824, intron 1 of 13)	intron (NM_145824, intron 1 of 13)	758.0	NM_145824	74334.0	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	104.11	119.8	78.62	72.87	115.69	76.36	133.08	140.61	64.33
Merged-chr11-103272207-2	chr11	103271708	103272708	+	650.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4807.0	NM_016896	53859.0	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.58	1.38	1.85	8.1	2.33	3.22	5.28	4.42	2.5
Merged-chr6-97214177-2	chr6	97213681	97214681	+	650.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022992, intron 1 of 2)	intron (NM_022992, intron 1 of 2)	3389.0	NM_022992	65106.0	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	18.88	20.27	35.15	20.24	12.6	28.94	17.96	15.03	13.74
Merged-chr9-22368077-2	chr9	22367561	22368561	+	650.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028390, intron 8 of 23)	G-rich|Low_complexity|Low_complexity	21145.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	49.77	66.81	40.7	47.23	51.32	51.44	68.65	64.11	53.71
Merged-chr2-27676503-1	chr2	27676003	27677003	+	650.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011305)	promoter-TSS (NM_011305)	-698.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	38.33	47.92	50.87	52.63	54.58	42.6	38.02	36.7	17.49
Merged-chr8-84659352-1	chr8	84658852	84659852	+	650.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	3500.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	13.73	5.53	9.25	8.1	5.6	9.65	4.22	6.63	8.74
Merged-chr16-55803774-1	chr16	55803274	55804274	+	650.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18364.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	36.61	37.32	25.9	68.82	49.92	65.11	38.02	50.41	24.98
Merged-chr2-45039726-1	chr2	45039226	45040226	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	-16549.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	31.46	37.32	24.97	37.78	37.79	39.39	46.47	34.93	38.72
Merged-chr8-115392573-2	chr8	115392054	115393054	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	314340.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	2.29	4.15	7.4	7.42	3.27	0.0	5.28	5.31	2.5
Merged-chr5-130026000-2	chr5	130025506	130026506	+	650.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1625.0	NM_133768	109900.0	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik|ASAL	argininosuccinate lyase	protein-coding	10.87	12.9	24.05	11.47	12.6	7.23	10.56	18.57	23.73
Merged-chr5-115339127-2	chr5	115338622	115339622	+	650.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029645, intron 1 of 2)	B3A|SINE|B2	2039.0	NM_029645	384281.0	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	21.74	14.28	15.72	14.17	15.39	17.68	29.57	15.92	26.23
Merged-chr4-59009890-2	chr4	59009392	59010392	+	650.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033165, intron 1 of 3)	PB1D7|SINE|Alu	6699.0	NM_001033165	72429.0	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	10.87	17.51	26.82	16.87	7.93	8.04	12.67	6.63	12.49
Merged-chr15-100590635-2	chr15	100590166	100591166	+	650.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304965, intron 3 of 10)	RMER6B|LTR|ERVK	-4301.0	NM_010127	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	9.15	14.28	16.65	14.84	11.2	22.51	17.96	19.01	15.61
Merged-chr19-59037696-2	chr19	59037189	59038189	+	650.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114312, intron 5 of 16)	intron (NM_001114312, intron 5 of 16)	38380.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	38.33	32.25	19.42	24.96	13.06	12.86	11.62	12.82	6.87
Merged-chr7-79728389-3	chr7	79727902	79728902	+	650.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	4374.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	4.0	0.46	3.7	4.72	2.8	0.0	5.28	0.44	0.0
Merged-chr4-47255818-2	chr4	47255322	47256322	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 6 of 39)	intron (NM_009928, intron 6 of 39)	47810.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	2.29	2.76	0.0	7.42	2.8	4.82	0.0	2.65	2.5
Merged-chr4-133153814-2	chr4	133153320	133154320	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	23187.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	48.62	68.2	82.32	46.56	40.12	51.44	92.94	80.03	56.21
Merged-chr2-43868588-1	chr2	43868088	43869088	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301831, intron 5 of 14)	Lx8b|LINE|L1	119764.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	2.29	5.07	1.85	12.14	11.2	1.61	2.11	4.42	5.0
Merged-chr7-80123879-1	chr7	80123379	80124379	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8529.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	3.43	6.45	1.85	6.75	7.46	3.22	9.51	4.86	7.49
Merged-chr11-94381516-1	chr11	94381016	94382016	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	11460.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	9.15	8.75	16.65	59.38	37.79	69.93	48.58	57.48	34.97
Merged-chr6-38145827-1	chr6	38145327	38146327	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194061, intron 15 of 19)	intron (NM_194061, intron 15 of 19)	-21241.0	NM_080467	140494.0	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	2.86	3.23	0.0	8.77	2.8	3.22	4.22	0.88	1.87
Merged-chr2-25181135-1	chr2	25180635	25181635	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025980, exon 1 of 1)	exon (NM_025980, exon 1 of 1)	377.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	22.31	8.75	12.02	16.19	8.86	12.06	20.07	14.59	9.37
Merged-chr15-99484418-1	chr15	99483918	99484918	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9688.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	4.0	0.92	3.7	8.77	3.27	3.22	4.22	2.21	4.37
Merged-chr11-96294717-1	chr11	96294217	96295217	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131758, intron 1 of 2)	intron (NR_131758, intron 1 of 2)	-4357.0	NM_008269	15414.0	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	2.29	3.69	1.85	2.02	1.87	0.0	1.06	3.98	1.25
Merged-chr4-132546090-1	chr4	132545590	132546590	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172400, intron 5 of 8)	intron (NM_172400, intron 5 of 8)	10531.0	NM_172400	68598.0	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	5.15	3.69	5.55	4.05	0.47	11.25	2.11	1.77	0.0
Merged-chr2-137898647-1	chr2	137898147	137899147	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-357937.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	1.72	5.53	9.25	0.67	4.67	8.04	2.11	3.1	3.75
Merged-chr19-47841372-2	chr19	47840870	47841870	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-4009.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	8.58	7.37	12.95	6.75	4.2	8.84	15.84	4.86	6.25
Merged-chr1-85882228-1	chr1	85881728	85882728	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY3-int|LTR|ERVK	-12282.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	2.29	2.3	3.7	2.7	3.27	2.41	2.11	0.44	5.0
Merged-chr18-20750398-1	chr18	20749898	20750898	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR10_RN|LTR|ERVK	-3994.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	21.17	11.52	10.17	38.46	23.79	19.29	41.19	23.43	8.12
Merged-chr2-25167273-1	chr2	25166773	25167773	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13485.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.58	2.76	3.7	0.67	0.93	1.61	4.22	5.31	0.0
Merged-chr11-34213089-1	chr11	34212589	34213589	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5000.0	NM_023907	14233.0	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	2.86	3.69	3.7	6.75	2.33	1.61	2.11	1.33	3.75
Merged-chr2-168979946-3	chr2	168979450	168980450	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	1681.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	34.32	52.99	15.72	37.11	53.18	32.96	64.43	99.05	18.74
Merged-chr10-26806325-1	chr10	26805825	26806825	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	33813.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	1.14	6.91	7.4	1.35	4.67	6.43	3.17	2.21	8.12
Merged-chrX-162735158-1	chrX	162734658	162735658	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_153331)	TTS (NR_153331)	1455.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	20.59	21.2	12.02	11.47	21.93	20.9	24.29	28.74	9.37
Merged-chr5-111133316-1	chr5	111132816	111133816	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	129172.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.58	5.07	3.7	3.37	5.6	9.65	5.28	5.31	5.62
Merged-chr2-30985459-2	chr2	30984961	30985961	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	3182.0	NM_028846	74270.0	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	9.15	3.23	2.77	6.07	7.93	2.41	5.28	3.1	7.49
Merged-chr1-92832383-1	chr1	92831883	92832883	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016696, intron 1 of 8)	CpG	738.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	6.29	1.84	1.85	2.7	1.87	3.22	2.11	0.88	1.25
Merged-chr14-103479630-1	chr14	103479130	103480130	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33711.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	21.17	26.26	12.95	18.89	11.2	11.25	19.01	14.59	14.99
Merged-chr3-146157613-1	chr3	146157113	146158113	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005846, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	7439.0	NM_001005846	68279.0	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	105.83	123.49	61.05	89.74	68.58	94.85	101.39	133.98	46.84
Merged-chr11-103418255-1	chr11	103417755	103418755	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-5591.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	65.21	40.55	35.15	45.88	20.06	39.39	103.51	73.4	26.85
Merged-chr10-7793291-1	chr10	7792791	7793791	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026141, intron 1 of 12)	intron (NM_026141, intron 1 of 12)	397.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	300.9	239.15	175.74	206.46	181.47	111.73	228.14	206.93	101.17
Merged-chr16-21403652-2	chr16	21403123	21404123	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19495.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	29.75	12.44	26.82	14.84	9.8	7.23	15.84	5.75	14.99
Merged-chr11-78885124-1	chr11	78884624	78885624	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-35663.0	NM_010927	18126.0	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	15.45	10.14	24.05	7.42	4.67	22.51	12.67	15.92	16.24
Merged-chr5-102043937-1	chr5	102043437	102044437	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	25984.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	14.3	14.75	33.3	12.14	8.86	16.88	23.24	11.94	16.24
Merged-chr19-46876004-3	chr19	46875502	46876502	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033569, intron 6 of 7)	intron (NM_033569, intron 6 of 7)	86349.0	NM_029810	76952.0	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	3.43	2.76	1.85	3.37	0.93	1.61	4.22	0.44	3.75
Merged-chr14-118234948-1	chr14	118234448	118235448	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_177753, exon 1 of 1)	exon (NM_177753, exon 1 of 1)	-1284.0	NR_131969	105245869.0	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	2.86	1.84	0.0	2.02	0.0	3.22	2.11	0.44	2.5
Merged-chr5-64722340-2	chr5	64721836	64722836	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1H|LTR|ERVL-MaLR	-81187.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.86	6.45	5.55	7.42	6.06	5.63	5.28	11.05	5.0
Merged-chr2-166046439-1	chr2	166045939	166046939	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	53802.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	39.47	20.27	24.97	48.58	24.26	28.13	24.29	25.65	16.24
Merged-chr7-98771362-1	chr7	98770862	98771862	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-63750.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	13.73	7.37	7.4	12.82	11.2	0.0	32.74	36.7	24.36
Merged-chr4-94979591-1	chr4	94979091	94980091	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177239)	promoter-TSS (NM_177239)	-491.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	130.43	94.0	98.97	140.34	90.97	106.1	128.85	120.27	61.83
Merged-chr7-44836486-1	chr7	44835986	44836986	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010215, intron 1 of 7)	intron (NM_010215, intron 1 of 7)	198.0	NM_010215	14204.0	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	55.49	37.78	49.02	53.3	29.39	50.64	62.31	50.85	50.59
Merged-chr5-121477866-1	chr5	121477366	121478366	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161626, intron 4 of 9)	intron (NM_001161626, intron 4 of 9)	14685.0	NM_001161627	77462.0	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	5.72	3.23	1.85	5.4	5.13	1.61	7.39	2.21	0.62
Merged-chr6-72103509-1	chr6	72103009	72104009	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	5901.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	29.75	45.16	45.32	35.09	30.32	51.44	53.87	54.83	44.34
Merged-chrX-107817394-1	chrX	107816894	107817894	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163104, intron 1 of 5)	intron (NM_001163104, intron 1 of 5)	917.0	NM_001163104	213449.0	Mm.444635	NM_001163104	ENSMUSG00000073007	Fam46d	Gm377	family with sequence similarity 46, member D	protein-coding	1.72	3.23	1.85	1.35	0.0	1.61	2.11	3.1	2.5
Merged-chr17-36273928-1	chr17	36273428	36274428	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1924.0	NM_024468	79263.0	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	5.72	10.6	9.25	2.7	5.6	9.65	4.22	4.86	9.99
Merged-chr3-84064673-2	chr3	84064194	84065194	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24533.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	1.72	4.15	7.4	11.47	4.67	1.61	3.17	4.42	5.0
Merged-chr5-23872924-1	chr5	23872424	23873424	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	20691.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	2.86	10.14	3.7	13.49	5.13	3.22	2.11	5.75	1.25
Merged-chr11-118244012-1	chr11	118243512	118244512	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	4580.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	36.61	47.0	24.05	35.76	22.86	27.33	42.25	42.01	23.73
Merged-chr5-77229188-3	chr5	77228685	77229685	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17714.0	NM_001289768	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	1.14	4.61	0.0	2.7	3.27	1.61	2.11	0.0	3.75
Merged-chr15-99471205-1	chr15	99470705	99471705	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	3525.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	10.87	9.68	1.85	18.22	10.26	2.41	7.39	7.96	3.75
Merged-chr3-107160199-1	chr3	107159699	107160699	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22944.0	NM_001081140	242151.0	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	4.0	3.23	1.85	2.7	3.27	3.22	2.11	4.86	2.5
Merged-chr12-111567773-1	chr12	111567273	111568273	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6629.0	NR_045295	100504687.0	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	5.15	3.23	4.62	5.4	8.4	1.61	3.17	19.46	10.62
Merged-chr2-27757734-1	chr2	27757234	27758234	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	47151.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	42.9	30.41	40.7	48.58	20.06	54.66	34.85	27.86	26.23
Merged-chr4-59058150-1	chr4	59057650	59058650	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22994.0	NM_025277	14700.0	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	12.59	7.37	11.1	5.4	9.8	16.08	7.39	3.54	2.5
Merged-chr9-97116165-1	chr9	97115665	97116665	+	650.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5124.0	NM_138756	192287.0	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	5.15	3.23	1.85	4.72	7.93	5.63	11.62	5.75	3.75
Merged-chr7-143605509-2	chr7	143605006	143606006	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5416.0	NM_013742	27267.0	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	12.01	18.89	8.32	16.19	11.66	27.33	20.07	12.82	8.74
Merged-chr2-117936761-2	chr2	117936240	117937240	+	650.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	114812.0	NR_040631	73938.0	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	19.45	16.59	5.55	10.8	11.2	8.84	8.45	3.1	9.99
Merged-chr11-74995100-2	chr11	74994601	74995601	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 10 of 18)	intron (NM_001002764, intron 10 of 18)	69229.0	NM_001002764	103677.0	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	127.57	148.83	78.62	104.58	106.83	99.67	100.34	164.93	72.45
Merged-chr9-51103477-1	chr9	51102977	51103977	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029654)	promoter-TSS (NR_029654)	168.0	NR_029655	723849.0		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	2.86	2.76	0.92	4.05	1.87	0.0	2.11	2.65	2.5
Merged-chr14-32509757-1	chr14	32509257	32510257	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3764.0	NM_001081221	319955.0	Mm.318310	NM_001081221	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	2.86	3.69	2.77	6.75	3.27	4.82	2.11	2.65	3.75
Merged-chr6-45026470-1	chr6	45025970	45026970	+	650.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33591.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	2.29	4.61	0.0	4.72	1.4	0.8	0.0	3.1	2.5
Merged-chr9-3024407-4	chr9	3023859	3024859	+	649.958313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	14384.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	9.15	61.75	617.87	28.34	68.58	651.07	29.57	20.78	739.44
Merged-chr15-57705182-4	chr15	57704672	57705672	+	649.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	10505.0	NM_199449	387609.0	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	42.9	48.38	43.47	51.28	43.85	56.27	100.34	58.81	22.48
Merged-chr17-35059051-3	chr17	35058545	35059545	+	649.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190449)	promoter-TSS (NM_001190449)	10.0	NM_016765	51793.0	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	9.15	6.45	13.87	8.1	9.33	8.04	12.67	6.63	20.61
Merged-chr11-3335983-2	chr11	3335486	3336486	+	649.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178149, intron 5 of 5)	intron (NM_178149, intron 5 of 5)	5255.0	NM_178149	216505.0	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	1.72	3.23	3.7	7.42	7.0	1.61	0.0	3.98	3.75
Merged-chr4-133519292-3	chr4	133518794	133519794	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083916, intron 1 of 3)	CpG	331.0	NM_133707	69073.0	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	18.88	10.14	3.7	22.94	2.8	1.61	11.62	7.96	2.5
Merged-chr10-127263165-3	chr10	127262687	127263687	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_008447, exon 1 of 28)	5' UTR (NM_008447, exon 1 of 28)	176.0	NM_008447	16572.0	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	12.01	7.37	12.95	10.12	8.4	11.25	11.62	4.42	1.25
Merged-chr8-94199678-3	chr8	94199170	94200170	+	649.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14894.0	NM_001357266	71805.0	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	5.15	1.84	0.0	4.05	1.4	3.22	5.28	3.1	2.5
Merged-chr6-124683869-3	chr6	124683427	124684427	+	649.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 1 of 11)	intron (NR_149320, intron 1 of 11)	20823.0	NM_145130	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	18.31	20.27	12.95	20.24	9.8	11.25	19.01	15.03	9.37
Merged-chr8-121927523-3	chr8	121927025	121928025	+	649.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	17387.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	5.72	3.23	12.95	8.1	1.4	0.8	2.11	2.21	0.0
Merged-chr18-61124823-2	chr18	61124345	61125345	+	649.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001037859, exon 14 of 22)	exon (NM_001037859, exon 14 of 22)	7377.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	12.01	14.28	22.2	17.54	15.39	40.99	45.42	17.24	25.61
Merged-chr1-55874341-3	chr1	55873860	55874860	+	649.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56881.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.29	4.15	1.85	5.4	2.8	3.22	1.06	1.77	0.62
Merged-chrX-99595669-3	chrX	99595166	99596166	+	649.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124931.0	NM_008853	18744.0	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	11.44	6.45	5.55	6.75	5.6	4.82	8.45	4.86	1.87
Merged-chr16-16555929-1	chr16	16555429	16556429	+	649.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	B1F|SINE|Alu	4290.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	12.59	24.88	24.05	24.29	27.06	40.19	20.07	30.07	24.98
Merged-chr19-24953813-2	chr19	24953305	24954305	+	649.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146097, intron 3 of 14)	intron (NM_146097, intron 3 of 14)	7811.0	NR_033744	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	17.73	16.13	11.1	2.7	2.8	3.22	10.56	27.86	14.99
Merged-chr14-70604689-3	chr14	70604185	70605185	+	649.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001252663, exon 14 of 14)	3' UTR (NM_001252663, exon 14 of 14)	-4850.0	NM_194345	239170.0	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	2.29	3.69	11.1	11.47	5.6	8.04	9.51	4.42	3.75
Merged-chr4-141834716-3	chr4	141834265	141835265	+	649.533325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8760.0	NM_007919	13706.0	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	12.59	5.99	5.55	4.05	2.8	3.22	5.28	5.75	3.75
Merged-chr4-122897124-1	chr4	122896624	122897624	+	649.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-11048.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	4.0	5.07	6.47	9.45	8.4	5.63	22.18	18.57	22.48
Merged-chrX-142426771-1	chrX	142426271	142427271	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36236.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	20.02	15.67	3.7	7.42	20.53	9.65	13.73	6.63	2.5
Merged-chr6-52486842-2	chr6	52486341	52487341	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-5610.0	NR_046049	74304.0	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	37.76	40.09	40.7	49.93	52.25	40.19	54.92	38.03	42.47
Merged-chr5-124085019-2	chr5	124084527	124085527	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 2 of 11)	intron (NM_019875, intron 2 of 11)	10771.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	8.01	1.38	0.0	15.52	2.33	3.22	5.28	0.88	5.0
Merged-chr13-23412558-1	chr13	23412058	23413058	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11308.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	8.01	8.29	7.4	6.07	6.53	11.25	2.11	2.21	2.5
Merged-chr13-112308870-2	chr13	112308409	112309409	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168404, intron 2 of 7)	intron (NM_001168404, intron 2 of 7)	20391.0	NM_001168404	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	2.29	2.76	3.7	3.37	3.73	3.22	5.28	2.65	3.75
Merged-chr15-89182458-1	chr15	89181958	89182958	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027081, exon 20 of 20)	3' UTR (NM_027081, exon 20 of 20)	-1670.0	NM_138749	140570.0	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	11.44	12.44	11.1	21.59	12.13	24.11	19.01	9.29	15.61
Merged-chr2-167680756-2	chr2	167680221	167681221	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8194.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	6.29	2.3	0.0	10.8	6.53	8.04	6.34	4.86	1.25
Merged-chr16-17891178-2	chr16	17890678	17891678	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109750, intron 1 of 9)	CpG	550.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	92.67	110.59	88.8	95.14	106.36	99.67	108.79	82.69	46.84
Merged-chrX-73918216-2	chrX	73917725	73918725	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019870, intron 6 of 7)	intron (NM_019870, intron 6 of 7)	3719.0	NM_001310538	56292.0	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	40.62	24.42	24.97	26.99	11.66	36.17	21.12	25.65	29.98
Merged-chr2-52606169-3	chr2	52605660	52606660	+	649.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	L2a|LINE|L2	-47549.0	NM_001285427	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	4.0	5.07	7.4	14.17	4.2	4.82	5.28	3.98	6.25
Merged-chr9-114748537-2	chr9	114748012	114749012	+	649.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_026036, exon 4 of 4)	3' UTR (NM_026036, exon 4 of 4)	17309.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	19.45	32.72	24.97	31.04	10.73	20.9	91.89	57.92	44.34
Merged-chr11-49983034-3	chr11	49982527	49983527	+	649.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4b|LINE|L1	-42304.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	9.15	9.22	7.4	13.49	5.6	11.25	28.52	11.05	11.87
Merged-chr9-32502623-2	chr9	32502112	32503112	+	649.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	38840.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	57.78	62.67	61.05	64.1	56.91	73.95	64.43	36.7	41.84
Merged-chr8-123849542-2	chr8	123849036	123850036	+	649.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028536, intron 2 of 3)	RLTR17|LTR|ERVK	10673.0	NM_028536	73420.0	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	16.02	12.44	4.62	7.42	15.39	16.08	1.06	0.0	3.12
Merged-chr11-101067194-3	chr11	101066624	101067624	+	649.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2970.0	NM_013792	27419.0	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	7.44	3.69	9.25	6.07	2.33	4.82	10.56	3.54	6.25
Merged-chr5-122536124-2	chr5	122535626	122536626	+	649.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33901.0	NR_027838	11938.0	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	16.02	13.36	14.8	22.27	11.2	22.51	7.39	4.86	5.0
Merged-chr11-20247180-2	chr11	20246711	20247711	+	649.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172260, intron 1 of 6)	intron (NM_172260, intron 1 of 6)	2213.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	27.46	12.44	14.8	9.45	7.0	13.66	3.17	1.33	3.75
Merged-chr16-35022921-2	chr16	35022423	35023423	+	649.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023587, intron 1 of 6)	CpG	502.0	NM_023587	70757.0	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	30.89	22.12	35.15	45.88	21.46	28.94	33.8	19.01	18.11
Merged-chr17-83278406-3	chr17	83277890	83278890	+	649.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63107.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	85.24	89.39	88.8	61.4	58.78	44.21	118.29	102.58	74.94
Merged-chr2-30679778-3	chr2	30679298	30680298	+	649.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-1787.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	40.62	44.24	23.12	37.11	35.92	57.07	24.29	22.99	30.6
Merged-chr17-70873481-1	chr17	70872981	70873981	+	649.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12881.0	NR_035427	100316676.0		NR_035427	ENSMUSG00000080468	Mir1195	Mirn1195|mmu-mir-1195	microRNA 1195	ncRNA	0.57	1.84	4.62	4.05	0.93	1.61	12.67	25.2	5.62
Merged-chr10-58498742-2	chr10	58498242	58499242	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162956, intron 1 of 15)	intron (NM_001162956, intron 1 of 15)	805.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	50.34	35.48	23.12	22.94	37.79	20.9	31.69	30.95	14.99
Merged-chr19-42139985-1	chr19	42139485	42140485	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-7404.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	17.73	5.53	9.25	10.8	12.6	7.23	4.22	4.42	4.37
Merged-chr19-45032017-1	chr19	45031517	45032517	+	649.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195265, intron 10 of 15)	intron (NM_001195265, intron 10 of 15)	13755.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	8.01	5.53	2.77	10.12	5.13	2.41	1.06	0.0	5.0
Merged-chr5-141094389-3	chr5	141093871	141094871	+	649.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-93775.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.72	8.29	11.1	6.75	2.33	1.61	4.22	3.1	5.0
Merged-chr4-129455530-3	chr4	129455052	129456052	+	649.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6127.0	NM_133889	100383.0	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	2.29	2.3	1.85	0.67	0.93	4.02	3.17	0.88	5.0
Merged-chr7-79997308-3	chr7	79996802	79997802	+	649.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27512.0	NM_001145999	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	4.58	6.91	1.85	4.05	3.73	4.82	2.11	2.21	6.87
Merged-chr9-63500118-2	chr9	63499613	63500613	+	649.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030068, intron 14 of 21)	intron (NM_030068, intron 14 of 21)	-100869.0	NM_027090	69478.0	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	8.01	2.76	0.0	3.37	1.4	0.8	3.17	4.86	2.5
Merged-chr11-97083087-2	chr11	97082598	97083598	+	649.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19330.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	4.0	1.38	5.55	6.07	4.2	0.0	6.34	3.98	1.25
Merged-chr4-41359556-3	chr4	41359050	41360050	+	649.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355508, intron 1 of 6)	B1F2|SINE|Alu	7587.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	56.63	78.79	42.55	64.1	59.25	71.54	39.08	69.86	40.59
Merged-chr2-24572153-3	chr2	24571644	24572644	+	649.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96545.0	NM_011040	18510.0	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	5.15	9.22	7.4	8.1	6.53	8.84	6.34	2.65	7.49
Merged-chr7-45709405-1	chr7	45708905	45709905	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_203280)	TTS (NM_203280)	4158.0	NM_016974	13170.0	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	19.45	17.51	16.65	15.52	9.33	12.86	15.84	12.38	16.86
Merged-chr18-39085851-1	chr18	39085351	39086351	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	92706.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	1.72	2.76	3.7	3.37	4.2	5.63	5.28	1.77	8.74
Merged-chr13-109922410-2	chr13	109921910	109922910	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	18601.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.57	5.07	1.85	3.37	3.27	1.61	1.06	2.21	1.25
Merged-chr11-69100483-1	chr11	69099983	69100983	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159367, intron 1 of 22)	intron (NM_001159367, intron 1 of 22)	331.0	NM_001159367	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	85.24	35.94	34.22	68.82	36.39	19.29	54.92	75.17	18.74
Merged-chr9-108005350-1	chr9	108004850	108005850	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013785, intron 1 of 5)	intron (NM_013785, intron 1 of 5)	2702.0	NM_013785	27399.0	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	34.32	20.27	13.87	21.59	10.26	11.25	11.62	8.84	16.86
Merged-chr2-116976481-1	chr2	116975981	116976981	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	76329.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	208.23	188.92	149.84	172.73	121.29	151.11	195.39	213.12	120.53
Merged-chr8-68362048-1	chr8	68361548	68362548	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 9 of 9)	intron (NM_172753, intron 9 of 9)	-6411.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	3.43	5.07	1.85	3.37	0.93	4.02	4.22	0.0	0.0
Merged-chr5-121330535-1	chr5	121330035	121331035	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181421, intron 49 of 75)	IAPLTR2a|LTR|ERVK	54874.0	NM_001359947	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	2.29	4.61	9.25	0.0	0.0	0.8	49.64	28.74	31.85
Merged-chr11-107446820-1	chr11	107446320	107447320	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	23900.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	13.73	8.75	12.95	19.57	24.26	16.08	31.69	21.67	34.35
Merged-chr4-155821215-2	chr4	155820704	155821704	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207678, intron 8 of 10)	B2_Mm1a|SINE|B2	8715.0	NM_207678	56036.0	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	5.15	0.92	5.55	2.7	5.13	6.43	9.51	3.98	3.75
Merged-chr4-97758113-3	chr4	97757633	97758633	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19493.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	63.5	57.14	35.15	62.75	61.58	46.62	60.2	84.01	39.97
Merged-chrX-99136849-1	chrX	99136349	99137349	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010110, exon 1 of 5)	5' UTR (NM_010110, exon 1 of 5)	788.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	16.59	23.96	24.97	22.27	23.33	22.51	12.67	25.2	13.74
Merged-chr5-146823988-1	chr5	146823488	146824488	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8902.0	NM_019647	19933.0	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	31.46	23.96	25.9	16.19	19.59	22.51	39.08	27.41	37.47
Merged-chr13-41574006-1	chr13	41573506	41574506	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32210.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	6.86	10.6	1.85	8.1	6.06	3.22	13.73	13.71	13.12
Merged-chr9-102616415-1	chr9	102615915	102616915	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081122, intron 5 of 16)	intron (NM_001081122, intron 5 of 16)	9709.0	NM_001301689	28135.0	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	6.29	6.45	7.4	4.72	7.93	5.63	12.67	15.48	14.99
Merged-chr3-129430663-1	chr3	129430163	129431163	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3010.0	NR_033594	435755.0	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	4.0	2.76	3.7	6.07	3.27	4.82	4.22	1.33	1.25
Merged-chr13-9424079-1	chr13	9423579	9424579	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	147554.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	21.17	32.25	31.45	24.29	8.86	14.47	27.46	23.88	27.48
Merged-chr11-70456856-1	chr11	70456356	70457356	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151497, intron 3 of 5)	intron (NR_151497, intron 3 of 5)	-2577.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	30.32	18.43	18.5	25.64	9.8	20.9	29.57	34.49	26.23
Merged-chr6-108527656-1	chr6	108527156	108528156	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 60 of 61)	intron (NM_010585, intron 60 of 61)	37913.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	21.74	10.14	10.17	25.64	16.79	18.49	6.34	8.84	11.24
Merged-chr7-38106944-1	chr7	38106444	38107444	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007633, intron 1 of 11)	intron (NM_007633, intron 1 of 11)	546.0	NM_007633	12447.0	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	10.87	8.29	11.1	12.14	6.06	9.65	16.9	8.4	8.12
Merged-chr17-15709839-1	chr17	15709339	15710339	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007690, intron 2 of 35)	Lx7|LINE|L1	4872.0	NM_007690	12648.0	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	20.59	14.28	17.57	8.77	12.6	20.09	19.01	14.15	19.36
Merged-chr1-66861959-1	chr1	66861459	66862459	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1350.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	13.73	11.06	9.25	45.88	37.32	20.09	60.2	43.33	14.99
Merged-chr4-131825977-1	chr4	131825477	131826477	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12301.0	NM_011214	19273.0	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.86	3.23	1.85	2.02	1.4	0.8	1.06	0.88	1.87
Merged-chr18-5133238-1	chr18	5132738	5133738	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32493.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	15.45	24.42	17.57	33.06	34.52	49.03	24.29	17.69	16.86
Merged-chr10-25433746-2	chr10	25433239	25434239	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	25371.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	25.17	11.06	11.1	9.45	14.93	8.04	7.39	3.98	13.74
Merged-chr15-64342639-1	chr15	64342139	64343139	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 2 of 28)	intron (NM_001276461, intron 2 of 28)	-29966.0	NM_001276463	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	1.14	0.46	1.85	3.37	5.13	4.82	5.28	0.88	3.12
Merged-chr12-35800784-1	chr12	35800284	35801284	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-105666.0	NR_045050	71581.0	Mm.100110	NR_045050	ENSMUSG00000113985	9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.57	6.45	3.7	1.35	3.27	3.22	5.28	1.33	3.12
Merged-chr10-117111735-1	chr10	117111235	117112235	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177798, intron 1 of 9)	MLT1N2|LTR|ERVL-MaLR	36739.0	NM_177798	327826.0	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	2.86	3.23	5.55	5.4	4.2	0.0	4.22	2.21	7.49
Merged-chr5-38092073-1	chr5	38091573	38092573	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	52843.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	1.72	6.45	11.1	5.4	7.46	9.65	2.11	1.77	5.0
Merged-chr5-16947691-1	chr5	16947191	16948191	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	393790.0	NM_001289461	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	3.43	4.15	1.85	5.4	1.4	0.0	3.17	0.0	5.0
Merged-chr2-91136753-1	chr2	91136253	91137253	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177720)	TTS (NM_001177720)	18609.0	NM_008653	17868.0	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	5.72	4.61	5.55	5.4	3.27	12.06	12.67	5.75	8.74
Merged-chr17-43033190-1	chr17	43032690	43033690	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	intron (NM_178589, intron 1 of 5)	16635.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	151.02	151.6	106.37	145.74	93.3	121.37	107.73	102.14	79.32
Merged-chr12-100528478-1	chr12	100527978	100528978	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7656.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	19.45	13.36	1.85	21.59	20.99	12.86	23.24	17.24	7.49
Merged-chr15-81011460-2	chr15	81010978	81011978	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153049)	TTS (NM_153049)	33713.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	1.72	1.38	9.25	3.37	4.2	4.82	3.17	2.21	5.0
Merged-chr9-90259524-1	chr9	90259024	90260024	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	11245.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	41.19	49.76	43.47	35.76	37.79	65.91	68.65	61.02	44.34
Merged-chr9-110653160-1	chr9	110652660	110653660	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183276, intron 1 of 53)	intron (NM_183276, intron 1 of 53)	1001.0	NM_183276	235627.0	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	49.77	40.55	24.97	31.71	17.26	18.49	40.14	26.53	21.23
Merged-chr7-104408518-2	chr7	104408024	104409024	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009099)	TTS (NM_009099)	37601.0	NM_001357467	20128.0	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	10.87	9.22	11.1	4.05	5.13	11.25	14.79	11.5	9.99
Merged-chr4-102493500-1	chr4	102493000	102494000	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 2 of 5)	intron (NM_001177983, intron 2 of 5)	-76560.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	11.44	5.99	2.77	8.1	1.4	0.8	8.45	3.1	5.0
Merged-chr15-90420880-1	chr15	90420380	90421380	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	67170.0	NR_155426	102640415.0	Mm.394352	NR_155426	ENSMUSG00000116204	Gm36480	-	predicted gene, 36480	ncRNA	1.14	1.84	6.47	2.7	2.8	2.41	3.17	3.54	2.5
Merged-chr13-37997631-1	chr13	37997131	37998131	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3423.0	NM_001360842	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	25.74	29.03	25.9	24.96	19.59	40.99	9.51	15.92	15.61
Merged-chr3-147064560-1	chr3	147064060	147065060	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212193.0	NM_001302957	70892.0	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.57	0.92	2.77	4.05	3.27	4.02	0.0	2.65	5.0
Merged-chr3-21959073-2	chr3	21958571	21959571	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117581.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	7.44	8.29	5.55	11.47	6.53	1.61	5.28	5.75	5.0
Merged-chr12-55446823-1	chr12	55446323	55447323	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45824.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	24.03	14.75	12.95	26.99	18.66	16.08	35.91	19.01	11.24
Merged-chr5-122950994-2	chr5	122950396	122951396	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	38203.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.86	3.23	9.25	10.12	2.33	1.61	8.45	5.31	3.75
Merged-chr6-110080957-2	chr6	110080447	110081447	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-564565.0	NM_001346640	108073.0	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	2.29	6.45	9.25	4.72	3.73	8.04	11.62	10.17	3.12
Merged-chr2-33962902-1	chr2	33962402	33963402	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74956.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.0	1.38	1.85	3.37	3.73	8.04	31.69	22.11	15.61
Merged-chr12-99874850-2	chr12	99874351	99875351	+	649.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030172, intron 3 of 5)	intron (NM_030172, intron 3 of 5)	8591.0	NM_030172	78767.0	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	5.15	7.37	15.72	10.12	3.73	6.43	19.01	10.17	6.25
Merged-chr9-96720752-1	chr9	96720252	96721252	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359959)	promoter-TSS (NM_001359959)	-902.0	NM_001359959	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	50.91	58.98	38.85	56.0	28.46	31.35	44.36	29.18	23.11
Merged-chr17-56751639-1	chr17	56751139	56752139	+	649.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008738, exon 3 of 3)	exon (NM_008738, exon 3 of 3)	5909.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.0	0.0	0.0	2.7	1.4	8.04	9.51	0.44	3.75
Merged-chr13-58188645-2	chr13	58188149	58189149	+	649.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026842, intron 6 of 10)	MTE-int|LTR|ERVL-MaLR	27004.0	NM_152234	56085.0	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	5.72	4.61	0.92	3.37	3.73	6.43	7.39	2.65	0.62
Merged-chr7-123242474-2	chr7	123241976	123242976	+	648.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146198, intron 6 of 16)	intron (NM_146198, intron 6 of 16)	27610.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	10.87	8.75	3.7	8.77	12.13	16.08	24.29	25.2	11.87
Merged-chr15-76625611-2	chr15	76625080	76626080	+	648.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_183091)	TTS (NM_183091)	504.0	NM_025842	66914.0	Mm.30028	NM_025842	ENSMUSG00000115987	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	50.34	53.91	31.45	51.95	42.92	65.91	69.71	61.02	43.09
Merged-chr7-80035287-2	chr7	80034785	80035785	+	648.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175433, intron 1 of 4)	intron (NM_175433, intron 1 of 4)	9057.0	NM_175433	209225.0	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	60.07	55.29	57.35	47.23	38.25	64.3	50.7	53.94	36.85
Merged-chrX-135753009-2	chrX	135752500	135753500	+	648.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005385, intron 5 of 9)	RLTR14|LTR|ERV1	6284.0	NR_106104	102465755.0		NR_106104	ENSMUSG00000106264	Mir7646	mmu-mir-7646	microRNA 7646	ncRNA	4.58	6.45	7.4	2.02	0.0	4.82	0.0	7.52	3.75
Merged-chr4-133744802-2	chr4	133744302	133745302	+	648.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080819, intron 1 of 19)	intron (NM_001080819, intron 1 of 19)	8809.0	NM_001080819	93760.0	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	108.12	104.14	108.22	72.19	56.91	71.54	28.52	9.29	9.99
Merged-chr11-62603753-1	chr11	62603253	62604253	+	648.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028541)	promoter-TSS (NR_028541)	293.0	NR_028550	100217455.0		NR_028550	ENSMUSG00000065734	Snord49a	MBII-243	small nucleolar RNA, C/D box 49A	snoRNA	278.02	303.2	135.97	273.26	295.3	166.38	302.07	351.97	140.52
Merged-chr18-57563097-3	chr18	57562660	57563660	+	648.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 2 of 6)	intron (NM_029290, intron 2 of 6)	-10763.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	6.86	4.61	3.7	8.1	4.67	7.23	4.22	3.98	3.75
Merged-chr10-44219256-3	chr10	44218761	44219761	+	648.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_001582, exon 7 of 7)	non-coding (NR_001582, exon 7 of 7)	3836.0	NR_027506	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	1.14	1.84	0.0	7.42	4.2	9.65	5.28	4.86	3.75
Merged-chr8-19561428-1	chr8	19560928	19561928	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66331.0	NM_139220	246080.0	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	4.58	0.92	3.7	5.4	0.93	1.61	8.45	5.31	1.87
Merged-chr19-55887973-2	chr19	55887468	55888468	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-7353.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.44	8.75	9.25	8.1	5.6	8.84	10.56	8.4	9.99
Merged-chr19-11659337-1	chr19	11658837	11659837	+	648.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037634, intron 1 of 3)	intron (NM_001037634, intron 1 of 3)	1222.0	NM_001037634	225922.0	Mm.26881	NM_001037634	ENSMUSG00000055895	Oosp2	Gm99|Plac1l|Tmem122	oocyte secreted protein 2	protein-coding	3.43	4.15	12.95	6.07	1.87	0.0	9.51	3.54	5.0
Merged-chr6-48746131-1	chr6	48745631	48746631	+	648.75	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175035)	promoter-TSS (NM_175035)	-66.0	NM_175035	317757.0	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	9.15	3.23	5.55	4.05	0.93	3.22	4.22	1.77	8.74
Merged-chr16-84879282-1	chr16	84878782	84879782	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43657.0	NM_001302213	11957.0	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	1.14	2.3	3.7	0.0	2.8	3.22	0.0	4.86	2.5
Merged-chr6-135377974-1	chr6	135377474	135378474	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001288627, intron 2 of 4)	intron (NM_001288627, intron 2 of 4)	10481.0	NM_001288627	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	3.43	3.23	0.0	2.7	2.8	3.22	1.06	1.33	3.75
Merged-chr16-32795378-3	chr16	32794871	32795871	+	648.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145874, intron 1 of 3)	intron (NM_001145874, intron 1 of 3)	2064.0	NM_146071	224116.0	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	1.72	2.76	0.0	6.07	2.8	0.0	1.06	0.88	2.5
Merged-chr7-135631958-3	chr7	135631476	135632476	+	648.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-19923.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	7.44	2.76	4.62	4.72	1.87	4.82	2.11	3.1	5.62
Merged-chr5-3224039-1	chr5	3223539	3224539	+	648.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119854.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	2.86	6.91	1.85	4.05	3.73	3.22	2.11	0.44	1.25
Merged-chr14-118922926-2	chr14	118922431	118923431	+	648.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360413)	promoter-TSS (NM_001360413)	-140.0	NM_001360413	66573.0	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	3.43	0.92	1.85	3.37	0.47	0.0	5.28	2.21	5.0
Merged-chr4-62600719-2	chr4	62600220	62601220	+	648.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	-18952.0	NM_001081650	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	6.29	1.84	2.77	9.45	2.33	1.61	4.22	0.44	5.0
Merged-chr7-96977888-2	chr7	96977402	96978402	+	648.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153591, intron 5 of 13)	intron (NM_153591, intron 5 of 13)	26375.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	25.74	25.8	20.35	49.93	42.92	26.53	30.63	24.32	21.23
Merged-chr6-124768707-2	chr6	124768210	124769210	+	648.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013509, intron 1 of 11)	intron (NM_013509, intron 1 of 11)	963.0	NM_001302642	13807.0	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	4.58	0.92	7.4	4.05	0.93	1.61	4.22	5.31	2.5
Merged-chr6-113099803-1	chr6	113099303	113100303	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028385, intron 1 of 21)	intron (NM_028385, intron 1 of 21)	-5132.0	NM_173005	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	17.73	44.24	18.5	26.99	22.86	35.37	44.36	17.24	18.74
Merged-chr1-64198517-2	chr1	64198015	64199015	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77126.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	105.26	131.32	89.72	103.23	84.9	102.88	120.41	158.3	98.68
Merged-chr14-69854101-2	chr14	69853606	69854606	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	13699.0	NM_028526	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.43	1.38	0.0	1.35	1.87	0.0	1.06	1.33	5.0
Merged-chr1-131046791-1	chr1	131046291	131047291	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26946.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.0	2.76	0.92	1.35	4.67	1.61	3.17	0.88	7.49
Merged-chr7-80830099-1	chr7	80829599	80830599	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26768.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	156.17	88.01	27.75	151.81	97.97	66.71	97.17	117.17	60.58
Merged-chr14-52195838-1	chr14	52195338	52196338	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033618, intron 1 of 25)	B3|SINE|B2	1401.0	NM_033618	114741.0	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	5.15	13.82	3.7	6.07	5.13	11.25	15.84	16.36	3.75
Merged-chr10-8771028-1	chr10	8770528	8771528	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	115042.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	22.31	11.06	18.5	24.96	11.2	28.13	11.62	9.29	6.25
Merged-chr2-170330783-1	chr2	170330283	170331283	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25578.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	23.45	14.28	18.5	35.09	19.13	24.11	14.79	15.48	29.35
Merged-chr3-95629986-1	chr3	95629486	95630486	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001026212, exon 3 of 3)	3' UTR (NM_001026212, exon 3 of 3)	5006.0	NM_001026212	56205.0	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	17.73	20.74	54.57	19.57	12.13	28.13	19.01	28.74	28.73
Merged-chr17-56951035-1	chr17	56950535	56951535	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15647.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	4.58	3.23	3.7	4.72	1.4	3.22	1.06	2.65	6.25
Merged-chr8-117281953-2	chr8	117281454	117282454	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	24935.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	73.22	60.82	49.02	65.45	34.06	45.82	42.25	58.37	31.23
Merged-chr17-6982540-2	chr17	6982022	6983022	+	648.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026611, intron 2 of 8).2	intron (NM_026611, intron 2 of 8).2	3662.0	NM_026611	68195.0	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	14.3	15.67	5.55	13.49	7.46	1.61	58.09	38.03	27.48
Merged-chr3-52199170-1	chr3	52198670	52199670	+	648.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69167.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	50.34	45.16	33.3	50.6	39.19	51.44	32.74	52.18	28.73
Merged-chrX-166241029-2	chrX	166240526	166241526	+	648.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177961, intron 1 of 6)	intron (NM_001177961, intron 1 of 6)	2083.0	NM_001177962	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	12.59	8.29	14.8	12.82	7.0	14.47	19.01	12.38	16.24
Merged-chr9-44094286-2	chr9	44093776	44094776	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_016808, exon 13 of 13)	3' UTR (NM_016808, exon 13 of 13)	-7494.0	NM_001190314	259172.0	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	5.72	6.45	5.55	4.05	7.0	16.88	5.28	1.77	3.12
Merged-chr2-34639439-2	chr2	34638930	34639930	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	115802.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.29	1.84	0.0	2.02	1.4	1.61	3.17	0.0	0.0
Merged-chr13-55249418-2	chr13	55248918	55249918	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008739, intron 5 of 22)	intron (NM_008739, intron 5 of 22)	39636.0	NM_008739	18193.0	Mm.168965	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	18.88	21.2	16.65	16.87	14.93	13.66	11.62	16.36	11.24
Merged-chr14-75121845-1	chr14	75121345	75122345	+	648.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027581, intron 5 of 9)	intron (NM_027581, intron 5 of 9)	9038.0	NM_027581	70859.0	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	9.72	10.14	1.85	10.12	7.93	0.8	5.28	11.05	6.87
Merged-chr18-35747099-3	chr18	35746565	35747565	+	648.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6511.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	36.04	35.48	35.15	26.31	19.59	51.44	39.08	51.73	45.59
Merged-chr1-62707126-2	chr1	62706664	62707664	+	648.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	3847.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	18.88	9.68	9.25	8.1	3.73	10.45	6.34	1.77	5.0
Merged-chr18-56821304-2	chr18	56820798	56821798	+	648.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	104250.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	20.02	12.44	5.55	2.7	3.27	4.82	4.22	2.65	5.0
Merged-chr5-134551476-3	chr5	134550910	134551910	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	1024.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	23.45	17.05	18.5	17.54	7.0	11.25	19.01	20.34	10.62
Merged-chr10-40087861-3	chr10	40087378	40088378	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114332, intron 1 of 5)	L1MC3|LINE|L1	54376.0	NM_028247	72472.0	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	17.73	16.59	7.4	11.47	10.73	19.29	22.18	11.05	19.36
Merged-chr8-94486187-1	chr8	94485687	94486687	+	648.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033207, intron 11 of 48)	intron (NM_001033207, intron 11 of 48)	13424.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	17.73	5.53	3.7	10.12	10.73	13.66	15.84	9.29	14.36
Merged-chr3-97298032-3	chr3	97297497	97298497	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70633.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	44.05	41.93	33.3	24.29	24.26	31.35	54.92	27.86	20.61
Merged-chr19-55841854-1	chr19	55841354	55842354	+	648.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-53467.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	26.31	11.98	26.82	9.45	18.66	17.68	15.84	10.61	14.99
Merged-chr1-88285031-3	chr1	88284538	88285538	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	5.72	8.29	12.02	10.12	11.66	12.06	8.45	7.52	8.74
Merged-chr16-32572703-2	chr16	32572203	32573203	+	648.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36193.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	6.86	5.07	3.7	8.1	6.53	2.41	5.28	2.21	3.75
Merged-chr7-45389172-2	chr7	45388646	45389646	+	648.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126539, intron 4 of 9)	intron (NR_126539, intron 4 of 9)	6596.0	NM_009224	20637.0	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	22.31	18.89	28.67	8.77	11.2	16.08	6.34	10.17	14.99
Merged-chrX-12155823-2	chrX	12155296	12156296	+	648.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	4550.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	9.72	10.6	12.02	14.84	11.2	1.61	5.28	5.75	8.74
Merged-chr7-16783472-1	chr7	16782972	16783972	+	648.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009201, intron 1 of 8)	intron (NM_009201, intron 1 of 8)	2126.0	NM_009201	20514.0	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	1.72	3.23	1.85	5.4	7.0	3.22	1.06	0.88	2.5
Merged-chr17-71869563-1	chr17	71869063	71870063	+	648.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87616.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	8.58	4.61	8.32	4.05	6.53	1.61	2.11	2.65	2.5
Merged-chr11-85849296-3	chr11	85848798	85849798	+	648.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16683.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	2.29	3.69	7.4	10.8	4.2	0.0	2.11	0.0	0.0
Merged-chr13-73847625-3	chr13	73847124	73848124	+	648.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028186)	promoter-TSS (NM_028186)	7.0	NM_028186	72293.0	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2	protein-coding	0.0	2.3	2.77	2.02	0.93	4.82	1.06	0.0	0.0
Merged-chr9-40531360-1	chr9	40530860	40531860	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357617)	promoter-TSS (NM_001357617)	23.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	5.15	0.0	6.47	6.07	0.93	3.22	5.28	0.88	1.25
Merged-chr1-91091715-1	chr1	91091215	91092215	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 9 of 22)	intron (NM_008515, intron 9 of 22)	38271.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	16.59	13.36	12.02	10.12	9.8	11.25	13.73	7.96	6.25
Merged-chr2-32530630-2	chr2	32530123	32531123	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-4736.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	7.44	5.07	12.02	5.4	8.4	4.82	4.22	1.77	3.75
Merged-chr9-95573419-1	chr9	95572919	95573919	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13602.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	191.64	156.21	221.99	228.73	150.22	173.62	241.87	260.44	121.78
Merged-chr3-107100928-3	chr3	107100489	107101489	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008417)	promoter-TSS (NM_008417)	-578.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	32.04	44.7	51.8	66.12	102.63	72.34	152.09	146.8	89.31
Merged-chr10-23853979-1	chr10	23853479	23854479	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011979, intron 2 of 6)	intron (NM_011979, intron 2 of 6)	2517.0	NM_011979	26464.0	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	1.14	2.3	1.85	5.4	0.0	3.22	9.51	3.54	5.62
Merged-chr5-112951564-1	chr5	112951064	112952064	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 9 of 20)	intron (NM_001285806, intron 9 of 20)	-55202.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	39.47	43.77	45.32	42.51	40.59	44.21	35.91	19.46	24.98
Merged-chr10-23787712-1	chr10	23787212	23788212	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011295)	promoter-TSS (NM_011295)	-503.0	NM_011295	20042.0	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	57.78	66.35	37.0	58.03	59.71	57.87	49.64	76.05	47.46
Merged-chr1-171196348-1	chr1	171195848	171196848	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025557)	promoter-TSS (NM_025557)	-80.0	NM_025557	66425.0	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	1.14	2.3	4.62	5.4	3.27	0.0	4.22	5.31	2.5
Merged-chr8-68193587-2	chr8	68193088	68194088	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82940.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	44.05	62.67	54.57	37.78	33.59	51.44	46.47	47.31	31.85
Merged-chr10-98542772-2	chr10	98542262	98543262	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-190895.0	NR_045179	667438.0	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	16.59	10.14	12.95	20.92	7.93	5.63	24.29	27.41	9.99
Merged-chr9-44130180-1	chr9	44129680	44130680	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152189, intron 1 of 1)	CpG	4305.0	NR_152189	100038560.0	Mm.429758	NR_152189		Gm10687	-	predicted gene 10687	ncRNA	10.3	2.3	7.4	7.42	5.6	4.82	9.51	3.1	7.49
Merged-chr15-95798742-1	chr15	95798242	95799242	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	7899.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	78.94	87.09	78.62	72.87	54.58	93.24	80.27	85.34	54.33
Merged-chr1-85572399-1	chr1	85571899	85572899	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E-int|LTR|ERVL-MaLR	26411.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	1.14	4.15	0.0	2.02	5.6	4.82	4.22	1.33	1.25
Merged-chr7-109541757-1	chr7	109541257	109542257	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001326, intron 6 of 19)	intron (NM_001001326, intron 6 of 19)	21625.0	NR_028079	100302499.0	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	2.86	4.61	9.25	9.45	7.93	1.61	7.39	4.42	6.25
Merged-chr3-97866845-1	chr3	97866345	97867345	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	21862.0	NM_001289702	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	9.72	8.29	1.85	15.52	4.2	4.82	6.34	4.42	5.0
Merged-chr5-66150150-1	chr5	66149650	66150650	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	828.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	104.11	125.33	84.17	113.35	115.69	94.85	115.12	121.6	81.81
Merged-chr16-56726824-1	chr16	56726324	56727324	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172825, intron 15 of 15)	L1MEf|LINE|L1	-9374.0	NM_001357126	21787.0	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	5.15	5.53	1.85	8.1	8.4	6.43	5.28	3.54	7.49
Merged-chr12-40656614-1	chr12	40656114	40657114	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 8 of 52)	intron (NM_172803, intron 8 of 52)	210561.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	78.37	119.8	88.8	72.87	70.44	88.42	126.74	131.77	70.57
Merged-chr4-55963574-1	chr4	55963074	55964074	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-431099.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	10.3	6.45	0.92	10.12	14.93	28.13	10.56	10.17	11.87
Merged-chr11-50155041-1	chr11	50154541	50155541	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029745, intron 10 of 20)	intron (NM_029745, intron 10 of 20)	-19810.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	30.32	32.25	9.25	63.42	49.45	22.51	15.84	19.01	3.75
Merged-chr6-113226919-1	chr6	113226419	113227419	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-10924.0	NM_001362183	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	5.72	4.61	13.87	8.1	3.27	5.63	10.56	11.5	8.12
Merged-chr1-138124201-2	chr1	138123705	138124705	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111316, intron 2 of 31)	intron (NM_001111316, intron 2 of 31)	50921.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	21.74	45.62	16.65	19.57	19.13	19.29	20.07	17.69	23.11
Merged-chr7-123294019-1	chr7	123293519	123294519	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122641, intron 16 of 18)	intron (NM_001122641, intron 16 of 18)	75896.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	18.88	11.06	35.15	7.42	4.2	16.08	10.56	11.94	18.11
Merged-chr6-73726644-1	chr6	73726144	73727144	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-255623.0	NR_108032	73408.0	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	2.86	0.46	4.62	6.07	3.27	3.22	2.11	2.65	7.49
Merged-chr2-165959944-2	chr2	165959475	165960475	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32662.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	22.31	18.43	7.4	22.94	18.66	24.11	17.96	23.43	20.61
Merged-chr11-70755867-2	chr11	70755350	70756350	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8597.0	NM_177565	193043.0	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	4.58	3.69	1.85	4.05	6.53	3.22	6.34	4.86	3.75
Merged-chr15-76473768-1	chr15	76473268	76474268	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	3501.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	4.58	4.61	4.62	2.02	0.93	4.82	9.51	9.73	16.24
Merged-chr11-100851298-1	chr11	100850798	100851798	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001113563)	promoter-TSS (NM_001113563)	-713.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	88.1	62.21	42.55	84.34	42.45	42.6	80.27	64.56	26.85
Merged-chr2-116999841-2	chr2	116999346	117000346	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	99694.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	9.15	3.69	7.4	8.77	4.2	4.82	9.51	8.4	7.49
Merged-chr3-90446997-1	chr3	90446497	90447497	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13361.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	28.6	26.26	29.6	42.51	36.39	59.48	40.14	26.09	51.21
Merged-chr19-29641642-2	chr19	29641151	29642151	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362131, intron 2 of 14)	intron (NM_001362131, intron 2 of 14)	6764.0	NM_001081213	226090.0	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	64.07	69.58	31.45	62.75	66.71	57.87	76.05	92.86	56.83
Merged-chr7-122919648-1	chr7	122919148	122920148	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50811.0	NR_045614	73951.0	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	58.35	75.57	70.3	77.59	44.78	102.08	98.23	105.68	78.07
Merged-chrX-129765447-1	chrX	129764947	129765947	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	intron (NM_172493, intron 1 of 26)	15705.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	4.58	1.38	11.1	6.07	1.87	3.22	7.39	2.65	2.5
Merged-chr16-94720638-1	chr16	94720138	94721138	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	109219.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.0	1.38	0.0	2.02	3.73	0.0	1.06	0.44	3.75
Merged-chr17-57305831-2	chr17	57305336	57306336	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163816, intron 19 of 25)	ZP3AR|Satellite|Satellite	26736.0	NM_001163815	22324.0	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	4.0	5.53	7.4	2.02	1.4	4.02	4.22	3.1	8.74
Merged-chr11-118237476-1	chr11	118236976	118237976	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11116.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	122.42	123.95	119.32	133.59	108.23	145.49	147.87	166.25	99.3
Merged-chr5-104025593-1	chr5	104025093	104026093	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3797.0	NM_053262	114664.0	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	16.59	21.2	12.95	16.19	17.26	16.08	23.24	15.03	22.48
Merged-chr9-16226352-1	chr9	16225852	16226852	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	151879.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	7.44	14.28	1.85	12.82	9.8	11.25	11.62	7.96	3.12
Merged-chr11-67975149-1	chr11	67974649	67975649	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001361352)	TTS (NM_001361352)	8691.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	10.3	4.15	12.02	9.45	4.67	4.82	11.62	11.5	3.75
Merged-chr5-141064963-1	chr5	141064463	141065463	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-64367.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.29	2.76	3.7	2.02	3.27	6.43	3.17	1.33	7.49
Merged-chr6-33540240-1	chr6	33539740	33540740	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	291112.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	23.45	24.88	22.2	18.89	24.72	33.76	41.19	38.47	13.12
Merged-chr11-30755055-1	chr11	30754555	30755555	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-16720.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	3.43	0.92	1.85	2.02	1.87	0.0	6.34	2.21	1.87
Merged-chr11-96969290-2	chr11	96968774	96969774	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030220, intron 1 of 6)	intron (NM_030220, intron 1 of 6)	8414.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	40.04	27.65	39.77	31.04	20.06	37.78	17.96	29.18	18.11
Merged-chr2-6557172-1	chr2	6556672	6557672	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110231, intron 13 of 15)	intron (NM_001110231, intron 13 of 15)	164490.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	7.44	6.91	7.4	8.77	2.8	9.65	8.45	1.77	2.5
Merged-chr8-91051861-2	chr8	91051362	91052362	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310530, exon 38 of 38)	exon (NM_001310530, exon 38 of 38)	-18195.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	15.45	24.88	25.9	23.62	18.66	37.78	17.96	12.38	26.85
Merged-chr2-129472107-1	chr2	129471607	129472607	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 3 of 6)	intron (NM_177653, intron 3 of 6)	64495.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.86	1.38	3.7	8.1	5.6	1.61	3.17	2.65	0.0
Merged-chr3-90445619-1	chr3	90445119	90446119	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-11983.0	NM_178876	229543.0	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	9.72	14.28	5.55	16.87	22.39	20.9	11.62	15.48	12.49
Merged-chr2-102945282-1	chr2	102944782	102945782	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43617.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	117.84	88.01	82.32	151.81	108.7	131.02	98.23	85.78	129.28
Merged-chr10-61068632-1	chr10	61068132	61069132	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20699.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	1.14	0.46	0.0	4.05	0.93	2.41	2.11	0.0	5.0
Merged-chr2-120563449-1	chr2	120562949	120563949	+	648.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011743, intron 1 of 21)	intron (NM_011743, intron 1 of 21)	410.0	NM_011743	20402.0	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|EyeLinc12|H3a|Sh3bp3|Znf106|sirm|zfp-106	zinc finger protein 106	protein-coding	264.86	223.48	219.21	273.94	176.34	182.46	315.8	348.43	203.6
Merged-chr16-64876945-2	chr16	64876453	64877453	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	24952.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	1.72	5.07	3.7	4.72	2.33	4.82	12.67	8.4	6.87
Merged-chr18-46947550-2	chr18	46947051	46948051	+	648.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11325.0	NM_178377	69456.0	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre	COMM domain containing 10	protein-coding	1.14	3.69	2.77	1.35	1.4	4.82	3.17	0.44	1.87
Merged-chr5-102571612-2	chr5	102571124	102572124	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029270, intron 2 of 9)	intron (NM_029270, intron 2 of 9)	90233.0	NM_029270	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	1.72	2.3	4.62	2.7	10.26	8.04	9.51	4.42	8.74
Merged-chr10-100030936-1	chr10	100030436	100031436	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347156, intron 1 of 8)	intron (NM_001347156, intron 1 of 8)	15115.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	13.73	16.59	12.95	17.54	9.33	8.84	11.62	4.86	5.0
Merged-chr2-155514860-2	chr2	155514357	155515357	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144786)	promoter-TSS (NM_144786)	-11.0	NM_144786	207182.0	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	2.86	0.92	3.7	1.35	2.8	0.0	7.39	0.0	1.25
Merged-chr6-100288700-1	chr6	100288200	100289200	+	648.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1342.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.29	4.61	3.7	4.05	1.4	3.22	5.28	1.33	2.5
Merged-chr10-53344919-3	chr10	53344435	53345435	+	647.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001141927, exon 3 of 3)	3' UTR (NM_001141927, exon 3 of 3)	7249.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	90.38	96.76	40.7	75.57	83.97	63.5	111.96	153.87	56.83
Merged-chr11-94692668-2	chr11	94692145	94693145	+	647.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	11854.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	8.58	4.61	8.32	10.8	1.4	12.86	2.11	9.29	2.5
Merged-chr3-121637961-3	chr3	121637463	121638463	+	647.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036458, intron 2 of 2)	intron (NR_036458, intron 2 of 2)	5522.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	6.29	0.92	0.0	4.72	1.4	1.61	2.11	2.65	7.49
Merged-chr16-91456822-2	chr16	91456341	91457341	+	647.766663	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-8263.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	68.07	75.57	74.92	63.42	46.18	68.32	103.51	105.68	71.2
Merged-chr2-102760590-2	chr2	102760041	102761041	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077514, intron 7 of 10)	intron (NM_001077514, intron 7 of 10)	-13781.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	35.47	35.94	35.15	35.09	29.86	22.51	33.8	26.97	14.99
Merged-chr9-58580964-2	chr9	58580444	58581444	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1296.0	NM_001293673	20320.0	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	15.45	23.5	10.17	37.11	36.39	36.17	36.97	41.12	39.35
Merged-chr2-6642515-2	chr2	6642034	6643034	+	647.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 5 of 15)	intron (NM_001110232, intron 5 of 15)	79128.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	9.15	14.75	20.35	7.42	6.53	12.06	6.34	10.61	4.37
Merged-chr5-85937069-2	chr5	85936563	85937563	+	647.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	128520.0	NM_001345902	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	2.29	1.84	1.85	3.37	3.73	1.61	2.11	0.88	6.25
Merged-chr6-51384174-3	chr6	51383736	51384736	+	647.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110455, intron 1 of 2)	intron (NR_110455, intron 1 of 2)	4526.0	NR_110455	625167.0	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	4.0	3.23	0.0	2.02	1.87	6.43	3.17	3.1	3.12
Merged-chr1-55051583-1	chr1	55051083	55052083	+	647.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-1187.0	NM_026424	67876.0	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	28.03	23.5	13.87	23.62	15.39	8.04	30.63	14.59	14.99
Merged-chrX-102102023-1	chrX	102101523	102102523	+	647.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17442.0	NM_027181	69713.0	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	2.29	5.99	0.0	6.07	8.4	11.25	9.51	8.84	6.87
Merged-chr9-3006849-3	chr9	3006352	3007352	+	647.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	31891.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	4.58	31.79	197.94	5.4	43.39	157.54	4.22	5.75	194.23
Merged-chr17-28621898-2	chr17	28621394	28622394	+	647.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016795, intron 2 of 15)	CpG	627.0	NM_016795	20815.0	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	34.9	23.04	26.82	41.16	22.86	42.6	43.3	21.67	25.61
Merged-chr17-34693230-2	chr17	34692743	34693743	+	647.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031176, intron 12 of 32)	intron (NM_031176, intron 12 of 32)	22708.0	NM_031176	81877.0	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	13.73	6.45	12.95	4.72	5.6	11.25	10.56	1.33	2.5
Merged-chr11-109368355-3	chr11	109367842	109368842	+	647.644409	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-4688.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	116.13	103.22	99.89	138.99	110.56	50.64	190.11	149.89	68.07
Merged-chr2-164909783-3	chr2	164909316	164910316	+	647.57782	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199027, intron 2 of 27)	intron (NM_199027, intron 2 of 27)	1934.0	NM_199027	329559.0	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	17.73	5.53	1.85	8.77	3.27	1.61	12.67	7.07	3.12
Merged-chr3-16043480-2	chr3	16042988	16043988	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37156.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	3.43	3.69	1.85	5.4	3.27	1.61	5.28	4.86	1.87
Merged-chr16-23927923-1	chr16	23927423	23928423	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008230, intron 1 of 1)	intron (NM_001008230, intron 1 of 1)	2871.0	NM_001008230	224055.0	Mm.39248	NM_001008230	ENSMUSG00000047531	Rtp2	Gm605	receptor transporter protein 2	protein-coding	1.72	0.92	0.0	5.4	1.4	9.65	5.28	0.0	5.62
Merged-chr17-47006228-2	chr17	47005734	47006734	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146078, intron 1 of 46)	L1MB5|LINE|L1	4298.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	12.59	11.06	16.65	19.57	7.46	16.08	19.01	11.05	9.99
Merged-chr2-12024122-1	chr2	12023622	12024622	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	246369.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	5.15	6.45	5.55	11.47	7.46	6.43	4.22	3.54	6.25
Merged-chr9-121759256-2	chr9	121758711	121759711	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001166644)	promoter-TSS (NM_001166644)	732.0	NR_033503	320301.0	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	3.43	1.38	5.55	3.37	1.87	2.41	2.11	0.44	2.5
Merged-chr6-135175190-1	chr6	135174690	135175690	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-6975.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	16.59	14.28	14.8	20.92	25.19	9.65	4.22	2.21	4.37
Merged-chr7-16097163-2	chr7	16096642	16097642	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001347559)	TTS (NM_001347559)	-1438.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	13.73	11.52	8.32	11.47	7.46	9.65	9.51	9.29	15.61
Merged-chr6-84061501-2	chr6	84061018	84062018	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077694, intron 4 of 54)	intron (NM_001077694, intron 4 of 54)	42132.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	2.86	2.76	5.55	2.02	7.0	3.22	7.39	1.77	5.0
Merged-chr3-149086732-2	chr3	149086235	149087235	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132100.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	34.32	29.49	8.32	36.43	14.93	22.51	13.73	13.71	8.74
Merged-chr14-104465771-1	chr14	104465271	104466271	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011143, exon 2 of 3)	exon (NM_011143, exon 2 of 3)	2228.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	3.43	0.0	7.4	0.67	1.87	0.0	2.11	0.44	1.25
Merged-chr1-97716640-1	chr1	97716140	97717140	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173760, intron 25 of 27)	intron (NM_173760, intron 25 of 27)	53452.0	NM_173760	227399.0	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	13.73	10.14	4.62	8.1	6.53	9.65	10.56	6.63	10.62
Merged-chr15-100755002-2	chr15	100754502	100755502	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6745.0	NM_021530	59033.0	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	28.6	10.14	9.25	3.37	3.27	12.86	20.07	12.82	13.74
Merged-chr3-75279846-1	chr3	75279346	75280346	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-9768.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	6.86	22.58	23.12	8.1	6.06	13.66	8.45	5.75	8.74
Merged-chr19-53140575-1	chr19	53140075	53141075	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164099, exon 1 of 15)	5' UTR (NM_001164099, exon 1 of 15)	132.0	NM_001164101	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.0	5.99	7.4	8.77	9.33	5.63	3.17	3.98	11.87
Merged-chr11-61714790-2	chr11	61714306	61715306	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033227, intron 6 of 15)	intron (NM_001033227, intron 6 of 15)	5993.0	NM_001033227	109342.0	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	8.01	4.15	2.77	1.35	1.87	0.0	7.39	1.33	0.62
Merged-chr19-11810610-2	chr19	11810107	11811107	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011502, intron 1 of 10)	intron (NM_011502, intron 1 of 10)	8796.0	NM_001286543	20908.0	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	37.76	41.01	46.25	27.66	23.79	63.5	27.46	28.3	28.73
Merged-chr4-132074229-1	chr4	132073729	132074729	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128607, intron 1 of 17)	intron (NM_001128607, intron 1 of 17)	1084.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	43.48	38.25	33.3	70.85	60.18	29.74	32.74	35.37	31.23
Merged-chr7-97944690-2	chr7	97944193	97945193	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177696, intron 1 of 17)	L1_Mur3|LINE|L1	24735.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	22.88	23.04	18.5	20.24	11.66	11.25	17.96	15.03	8.74
Merged-chr6-135160199-2	chr6	135159710	135160710	+	647.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	ID_B1|SINE|B4	8005.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	23.45	18.89	23.12	24.29	10.73	20.09	11.62	7.07	5.0
Merged-chr8-105304136-2	chr8	105303637	105304637	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148952, intron 7 of 9)	intron (NM_148952, intron 7 of 9)	-1464.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	21.74	20.74	29.6	20.24	7.0	24.11	53.87	26.97	33.1
Merged-chr18-38440012-2	chr18	38439515	38440515	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	21108.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	18.88	26.26	16.65	18.22	19.59	21.7	35.91	22.55	24.98
Merged-chr4-147867738-1	chr4	147867238	147868238	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025365, intron 1 of 9)	intron (NM_001025365, intron 1 of 9)	981.0	NM_001025365	28010.0	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	29.17	31.33	21.27	22.27	29.86	50.64	65.48	39.8	31.85
Merged-chr12-80725040-1	chr12	80724540	80725540	+	647.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177503)	TTS (NM_001177503)	32439.0	NM_001177503	217682.0	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	1.72	1.84	0.0	3.37	6.53	1.61	3.17	0.0	3.12
Merged-chr13-51424873-3	chr13	51424361	51425361	+	647.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16243.0	NM_010101	13610.0	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	5.72	4.15	1.85	2.02	1.87	1.61	4.22	4.42	3.75
Merged-chr2-76088663-2	chr2	76088182	76089182	+	647.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 10 of 19)	intron (NM_001081033, intron 10 of 19)	-106715.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.43	3.23	3.7	5.4	1.4	1.61	3.17	5.75	0.0
Merged-chr6-103367246-2	chr6	103366762	103367762	+	647.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-143614.0	NM_007697	12661.0	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	2.29	1.84	9.25	4.05	5.6	3.22	1.06	2.21	3.75
Merged-chr12-98884719-2	chr12	98884211	98885211	+	647.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081191, intron 2 of 43)	intron (NM_001081191, intron 2 of 43)	16773.0	NM_001081191	319670.0	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	13.16	9.68	9.25	3.37	4.2	2.41	14.79	5.31	1.87
Merged-chr1-119997270-2	chr1	119996778	119997778	+	647.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2068.0	NM_001115074	226356.0	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	4.58	2.76	3.7	1.35	0.93	0.0	2.11	0.88	6.25
Merged-chr6-124863760-1	chr6	124863260	124864260	+	647.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013488)	TTS (NM_013488)	223.0	NM_013533	14788.0	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	9.72	5.53	3.7	10.12	5.6	1.61	4.22	3.54	0.0
Merged-chr19-38030898-3	chr19	38030412	38031412	+	647.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12665.0	NM_001099634	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	7.44	14.28	12.02	12.14	10.73	16.88	27.46	29.63	25.61
Merged-chr13-61241741-2	chr13	61241249	61242249	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13599.0	NM_019541	56094.0	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	2.86	2.3	5.55	0.67	0.93	1.61	2.11	2.21	1.25
Merged-chr19-4441343-1	chr19	4440843	4441843	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045989, intron 1 of 4)	intron (NR_045989, intron 1 of 4)	1784.0	NR_045989	319314.0	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	9.15	3.69	0.0	16.19	4.2	6.43	6.34	1.77	2.5
Merged-chr4-137338647-2	chr4	137338147	137339147	+	647.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009861, intron 1 of 5)	intron (NM_009861, intron 1 of 5)	19112.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	6.86	17.05	19.42	4.05	8.4	21.7	14.79	10.17	17.49
Merged-chr7-3630560-2	chr7	3630031	3631031	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001290381)	promoter-TSS (NM_001290381)	546.0	NM_027328	68988.0	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	36.61	49.76	51.8	50.6	37.79	56.27	60.2	61.46	29.35
Merged-chr19-34826404-2	chr19	34825919	34826919	+	647.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114339, intron 3 of 6)	intron (NM_001114339, intron 3 of 6)	-5646.0	NR_029783	723826.0		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	11.44	2.76	0.0	6.75	3.27	3.22	7.39	3.54	5.0
Merged-chr11-9117997-2	chr11	9117490	9118490	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001159402)	promoter-TSS (NM_001159402)	-18.0	NM_001159401	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	6.86	3.69	1.85	2.7	2.33	8.84	5.28	2.65	0.62
Merged-chr12-76710134-2	chr12	76709604	76710604	+	647.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_013675, exon 1 of 36)	5' UTR (NM_013675, exon 1 of 36)	443.0	NM_013675	20741.0	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	1.72	0.92	1.85	6.75	4.67	4.82	1.06	1.33	2.5
Merged-chr14-51984908-2	chr14	51984422	51985422	+	647.233337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198249)	promoter-TSS (NM_198249)	89.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	10.87	5.53	3.7	2.7	0.47	5.63	4.22	0.44	5.62
Merged-chr4-150073296-2	chr4	150072795	150073795	+	647.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4841.0	NR_029751	723848.0		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	5.15	0.46	1.85	4.72	3.27	3.22	6.34	1.33	1.25
Merged-chr6-117190640-1	chr6	117190140	117191140	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22105.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	1.72	5.07	1.85	0.0	1.4	1.61	2.11	0.44	5.0
Merged-chr9-53696080-1	chr9	53695580	53696580	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	PB1D7|SINE|Alu	10152.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	7.44	13.82	16.65	17.54	8.4	17.68	8.45	7.96	6.25
Merged-chr7-81344616-1	chr7	81344116	81345116	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009092, intron 2 of 4)	CpG	618.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	96.68	82.02	60.12	93.11	78.37	94.85	95.06	74.28	53.08
Merged-chr3-69009533-1	chr3	69009033	69010033	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_029529)	promoter-TSS (NR_029529)	-239.0	NR_029529	387175.0		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	20.59	17.05	16.65	15.52	14.0	4.82	23.24	15.92	20.61
Merged-chr13-112438124-1	chr13	112437624	112438624	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-25946.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	22.31	11.98	5.55	4.72	3.73	0.8	11.62	0.44	9.99
Merged-chrX-137015575-1	chrX	137015075	137016075	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 5 of 6)	intron (NM_001082412, intron 5 of 6)	22398.0	NM_001358440	66995.0	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	1.72	0.46	1.85	2.02	1.4	1.61	0.0	1.33	0.62
Merged-chr19-55806987-2	chr19	55806486	55807486	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	65176.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	38.33	22.12	42.55	29.69	25.19	22.51	15.84	15.48	18.74
Merged-chr9-44498608-2	chr9	44498100	44499100	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030256)	promoter-TSS (NM_030256)	-536.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	9.72	2.3	1.85	2.02	6.06	3.22	6.34	0.0	3.12
Merged-chr1-23495626-1	chr1	23495126	23496126	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M8|LINE|L1	-78961.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	5.72	2.3	1.85	0.67	4.67	6.43	2.11	2.65	3.75
Merged-chr14-65781756-1	chr14	65781256	65782256	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-24155.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	1.14	2.76	9.25	0.67	2.33	8.04	2.11	1.33	3.75
Merged-chr13-119790073-2	chr13	119789557	119790557	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302550, intron 2 of 6)	intron (NM_001302550, intron 2 of 6)	401.0	NM_001302547	72465.0	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	82.38	53.91	45.32	60.05	46.65	41.8	74.99	48.64	38.72
Merged-chr6-32346139-1	chr6	32345639	32346639	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-165002.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	6.29	3.23	5.55	2.02	3.73	3.22	4.22	0.88	6.87
Merged-chr13-113611792-1	chr13	113611292	113612292	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	6772.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	34.32	20.74	12.02	20.92	15.86	12.06	22.18	18.57	13.12
Merged-chr9-40346537-1	chr9	40346037	40347037	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357619)	promoter-TSS (NM_001357619)	-292.0	NM_001357619	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	4.58	1.38	0.92	4.05	2.33	4.82	6.34	0.88	2.5
Merged-chr16-89959138-2	chr16	89958614	89959614	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145886, intron 1 of 27)	intron (NM_001145886, intron 1 of 27)	1713.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	1.72	2.76	7.4	4.05	0.93	0.0	1.06	0.88	3.75
Merged-chr4-136125210-1	chr4	136124710	136125710	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18612.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	73.79	62.21	38.85	81.64	58.78	71.54	144.7	146.8	58.71
Merged-chr9-57580113-1	chr9	57579613	57580613	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022813, intron 4 of 8)	intron (NM_022813, intron 4 of 8)	-9339.0	NM_027895	71742.0	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	2.86	4.61	20.35	6.07	1.4	9.65	11.62	4.86	7.49
Merged-chr4-122961159-1	chr4	122960659	122961659	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029662)	promoter-TSS (NM_029662)	29.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	13.16	12.9	0.0	11.47	7.93	8.04	17.96	12.38	1.25
Merged-chr2-105676264-1	chr2	105675764	105676764	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_013627, exon 1 of 13)	5' UTR (NM_013627, exon 1 of 13)	135.0	NM_001244202	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	2.29	2.3	1.85	2.02	1.87	0.8	4.22	0.88	3.75
Merged-chr7-16099636-3	chr7	16099157	16100157	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025898, intron 1 of 10)	intron (NM_025898, intron 1 of 10)	1077.0	NM_025898	108124.0	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAP-alpha|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	166.47	146.07	115.62	112.68	118.49	81.99	152.09	122.04	76.19
Merged-chr4-135874662-1	chr4	135874162	135875162	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026383)	promoter-TSS (NM_026383)	-816.0	NM_026383	52830.0	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	98.39	126.25	97.12	198.37	165.61	150.31	198.56	225.95	119.28
Merged-chrX-109198179-1	chrX	109197679	109198679	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037917, exon 2 of 2)	exon (NM_001037917, exon 2 of 2)	1423.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	50.91	60.82	14.8	36.43	36.85	19.29	42.25	33.16	33.1
Merged-chr13-59508766-1	chr13	59508266	59509266	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001048008, intron 11 of 17)	intron (NM_001048008, intron 11 of 17)	35685.0	NM_001284221	67269.0	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	8.01	7.37	0.0	2.7	5.6	8.04	4.22	8.4	9.99
Merged-chr16-65567374-1	chr16	65566874	65567874	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4677.0	NM_026879	68942.0	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	6.29	5.53	1.85	6.07	5.13	4.02	3.17	4.42	6.25
Merged-chr2-165885234-1	chr2	165884734	165885734	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001252584)	promoter-TSS (NM_001252584)	-396.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	191.07	197.22	148.92	193.64	167.48	223.45	262.99	259.99	181.11
Merged-chr11-69098135-1	chr11	69097635	69098635	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011065)	promoter-TSS (NM_011065)	-814.0	NM_011065	18626.0	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	462.79	343.28	212.74	432.49	300.9	325.53	288.34	316.15	212.34
Merged-chr13-113032155-1	chr13	113031655	113032655	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3224.0	NM_001281487	238896.0		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	4.0	3.23	0.0	2.02	1.4	0.8	3.17	0.44	3.12
Merged-chr18-25472135-1	chr18	25471635	25472635	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207613.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	6.29	4.15	3.7	6.07	4.2	4.82	5.28	2.21	5.0
Merged-chr8-25784441-1	chr8	25783941	25784941	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026121, intron 1 of 4)	intron (NM_026121, intron 1 of 4)	768.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	21.17	25.34	17.57	18.89	26.59	20.9	12.67	13.27	12.49
Merged-chr3-107037729-1	chr3	107037229	107038229	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	1567.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	3.43	3.69	3.7	8.1	2.33	6.43	5.28	2.21	9.37
Merged-chr5-35727681-1	chr5	35727181	35728181	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 1 of 17)	intron (NM_001359895, intron 1 of 17)	1595.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	81.23	58.52	29.6	98.51	108.23	81.18	96.11	91.97	28.1
Merged-chr4-149783282-2	chr4	149782783	149783783	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9016.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	157.31	82.94	122.09	155.19	68.58	114.94	155.26	141.49	83.06
Merged-chr14-20930151-1	chr14	20929651	20930651	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	753.0	NM_009502	22330.0	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	13.73	7.83	7.4	10.12	11.66	13.66	13.73	8.84	10.62
Merged-chrX-155212786-1	chrX	155212286	155213286	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291865)	TTS (NM_001291865)	3663.0	NM_009121	20229.0	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	45.76	53.91	26.82	51.28	78.37	35.37	60.2	78.71	27.48
Merged-chr18-17490898-1	chr18	17490398	17491398	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90092.0	NR_045374	75162.0	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	1.72	9.68	0.0	4.72	9.33	1.61	4.22	6.63	0.0
Merged-chr4-57017394-1	chr4	57016894	57017894	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 21 of 24)	intron (NM_001355492, intron 21 of 24)	-27003.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	2.86	0.92	1.85	2.02	0.47	1.61	2.11	0.88	2.5
Merged-chr10-25313291-1	chr10	25312791	25313791	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14128.0	NM_018747	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	9.15	9.68	1.85	14.17	11.2	4.82	10.56	3.1	0.62
Merged-chr9-20857322-1	chr9	20856822	20857822	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11320.0	NM_175687	319278.0	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.57	0.92	1.85	2.02	1.4	0.0	2.11	1.77	3.12
Merged-chrY-90810941-1	chrY	90810441	90811441	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_137282, intron 2 of 2)	intron (NR_137282, intron 2 of 2)	25499.0	NM_133362	170942.0	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	1.72	1.38	5.55	2.02	3.27	4.82	13.73	9.29	37.47
Merged-chrX-21089746-1	chrX	21089246	21090246	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183185)	promoter-TSS (NM_183185)	-517.0	NM_183185	245368.0	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	3.43	8.75	8.32	12.14	11.2	11.25	8.45	7.07	5.0
Merged-chr2-32845952-1	chr2	32845452	32846452	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	1280.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	76.66	62.67	74.92	59.38	74.17	96.45	80.27	95.95	62.45
Merged-chr7-55910217-1	chr7	55909717	55910717	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 22 of 30)	L1MC4a|LINE|L1	52276.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	135.0	201.36	96.2	140.34	96.57	159.95	172.16	214.89	101.17
Merged-chr4-109147760-1	chr4	109147260	109148260	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346502, intron 3 of 23)	intron (NM_001346502, intron 3 of 23)	-9847.0	NM_001355190	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	5.15	5.53	7.4	13.49	4.67	1.61	3.17	2.65	5.0
Merged-chr7-16614266-2	chr7	16613775	16614775	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136929, intron 1 of 2)	GC_rich|Low_complexity|Low_complexity	235.0	NR_136929	102634559.0	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	57.21	51.61	38.85	66.8	35.92	40.19	49.64	26.09	23.73
Merged-chr5-66169298-1	chr5	66168798	66169798	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040695, intron 2 of 2)	RSINE1|SINE|B4	-17344.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.0	1.84	2.77	3.37	1.4	1.61	4.22	1.77	2.5
Merged-chr11-4336041-1	chr11	4335541	4336541	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69245.0	NM_001039537	16878.0	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	4.58	4.61	10.17	6.75	2.33	4.82	4.22	1.77	0.0
Merged-chr1-184589507-1	chr1	184589007	184590007	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31816.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.0	5.07	1.85	8.77	0.47	6.43	5.28	2.21	1.25
Merged-chr7-120102893-1	chr7	120102393	120103393	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145586, intron 1 of 4)	intron (NM_145586, intron 1 of 4)	467.0	NM_145586	233806.0	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	14.3	6.91	0.0	12.14	5.13	6.43	15.84	9.29	8.74
Merged-chr15-10890442-1	chr15	10889942	10890942	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61391.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	5.72	3.23	5.55	3.37	5.6	3.22	4.22	0.88	1.25
Merged-chr13-28607831-1	chr13	28607331	28608331	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 6 of 7)	intron (NR_045054, intron 6 of 7)	103042.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	11.44	10.14	13.87	20.24	26.12	14.47	28.52	16.8	18.11
Merged-chr12-119313606-1	chr12	119313106	119314106	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-75330.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	20.59	28.57	24.05	18.89	30.79	18.49	32.74	34.05	23.73
Merged-chr2-166074331-1	chr2	166073831	166074831	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_028072, exon 21 of 21)	3' UTR (NM_028072, exon 21 of 21)	80954.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	4.58	3.69	8.32	6.07	4.2	4.82	2.11	0.44	5.0
Merged-chr11-78114888-2	chr11	78114376	78115376	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	20203.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	16.59	9.22	10.17	11.47	4.67	12.06	14.79	7.96	5.62
Merged-chr1-171033786-1	chr1	171033286	171034286	+	647.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14860.0	NM_144559	246256.0	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	16.02	11.06	3.7	10.8	12.13	0.0	14.79	10.17	8.74
Merged-chr13-51845218-1	chr13	51844718	51845718	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1457.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	43.48	41.93	26.82	58.7	28.92	36.17	81.33	63.23	32.48
Merged-chr2-105835103-1	chr2	105834603	105835603	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023876, intron 4 of 9)	intron (NM_023876, intron 4 of 9)	69461.0	NM_023876	77766.0	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	7.44	6.45	1.85	4.05	4.2	4.82	6.34	3.1	9.99
Merged-chr18-11837054-2	chr18	11836552	11837552	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045421, intron 1 of 3)	intron (NR_045421, intron 1 of 3)	-2222.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	6.29	9.68	8.32	2.7	5.6	11.25	0.0	4.86	2.5
Merged-chr14-122029231-1	chr14	122028731	122029731	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5443.0	NM_001037744	223262.0	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	2.86	2.3	5.55	6.75	4.67	4.82	1.06	2.65	5.0
Merged-chr1-80638061-1	chr1	80637561	80638561	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 2 of 55)	intron (NM_175291, intron 2 of 55)	27291.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	37.76	57.6	41.62	48.58	34.06	64.3	54.92	58.81	56.21
Merged-chr1-95380700-1	chr1	95380200	95381200	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	67072.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	18.88	21.2	23.12	17.54	11.2	33.76	29.57	21.67	28.73
Merged-chr7-128208281-1	chr7	128207781	128208781	+	647.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1915.0	NM_009943	12862.0	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	1.14	2.3	7.4	8.1	0.47	4.02	9.51	3.1	3.12
Merged-chr1-88276371-1	chr1	88275871	88276871	+	647.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172505, intron 2 of 4)	intron (NM_172505, intron 2 of 4)	1186.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	32.61	49.3	37.0	37.78	30.79	24.11	55.98	49.08	48.09
Merged-chr14-31401529-3	chr14	31401016	31402016	+	646.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	16161.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	116.7	101.37	66.6	160.58	111.03	142.27	133.08	102.14	74.32
Merged-chr2-119336677-2	chr2	119336186	119337186	+	646.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10489.0	NR_030683	100043609.0	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4	predicted gene 14207	ncRNA	36.04	27.65	33.3	22.27	13.53	27.33	28.52	13.71	21.86
Merged-chr2-85007935-2	chr2	85007446	85008446	+	646.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145526, intron 8 of 11)	B2_Mm2|SINE|B2	19731.0	NM_016914	53856.0	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	4.0	3.23	0.0	2.7	2.33	4.82	3.17	3.54	2.5
Merged-chr11-77493795-3	chr11	77493297	77494297	+	646.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004144, intron 1 of 19)	CpG	385.0	NM_001004144	216963.0	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	23.45	21.66	31.45	29.01	20.99	20.09	25.35	19.9	23.73
Merged-chr2-129403114-1	chr2	129402614	129403614	+	646.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31975.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.29	1.84	3.7	11.47	12.13	21.7	5.28	3.54	5.0
Merged-chr7-123149091-2	chr7	123148604	123149604	+	646.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144925, intron 3 of 23)	intron (NM_144925, intron 3 of 23)	25219.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	8.01	14.28	9.25	9.45	7.0	8.04	14.79	8.4	21.86
Merged-chr4-138319689-2	chr4	138319199	138320199	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026880, intron 3 of 7)	intron (NM_026880, intron 3 of 7)	-3499.0	NR_105986	102466788.0		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	4.0	3.69	1.85	2.7	4.2	6.43	2.11	2.65	0.0
Merged-chr3-16005563-2	chr3	16005044	16006044	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	Lx2|LINE|L1	788.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	65.79	76.49	63.82	52.63	54.11	83.59	81.33	58.37	50.59
Merged-chr13-41825746-2	chr13	41825237	41826237	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 2 of 6)	intron (NM_001145875, intron 2 of 6)	21751.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	9.72	11.98	5.55	13.49	13.06	9.65	9.51	8.84	12.49
Merged-chr14-65805921-2	chr14	65805465	65806465	+	646.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023209)	promoter-TSS (NM_023209)	54.0	NM_023209	52033.0	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	8.58	6.91	11.1	4.72	7.93	6.43	9.51	3.1	7.49
Merged-chr18-42589649-2	chr18	42589160	42590160	+	646.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10008.0	NM_181543	240239.0	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	2.29	1.38	0.0	1.35	2.8	4.82	2.11	2.21	0.0
Merged-chr4-19567071-1	chr4	19566571	19567571	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027769, intron 1 of 15)	PB1D9|SINE|Alu	3037.0	NM_027769	70568.0	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	17.16	4.15	7.4	8.1	7.0	8.84	8.45	3.54	2.5
Merged-chr1-172315170-1	chr1	172314670	172315670	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080419, intron 1 of 6)	intron (NM_080419, intron 1 of 6)	2803.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	52.63	39.17	24.97	55.33	41.05	54.66	26.4	12.82	9.99
Merged-chr5-96172031-1	chr5	96171531	96172531	+	646.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10041.0	NM_144910	231464.0	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	8.01	2.3	1.85	4.72	7.46	4.82	7.39	3.54	3.12
Merged-chr11-57698488-1	chr11	57697988	57698988	+	646.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134189, intron 1 of 11)	intron (NM_134189, intron 1 of 11)	-48994.0	NR_153850	78762.0	Mm.362149	NR_153850		4933424L21Rik	-	RIKEN cDNA 4933424L21 gene	ncRNA	4.58	2.3	0.0	2.7	5.13	4.82	2.11	2.65	0.0
Merged-chr12-4641026-1	chr12	4640526	4641526	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001198969, exon 17 of 17)	3' UTR (NM_001198969, exon 17 of 17)	48018.0	NM_001198968	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	12.59	22.12	19.42	14.84	7.0	16.08	15.84	10.61	18.74
Merged-chr17-55958413-2	chr17	55957862	55958862	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028381)	promoter-TSS (NM_028381)	-825.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	54.92	48.84	63.82	53.3	57.85	86.81	57.03	72.52	59.95
Merged-chr4-41098284-2	chr4	41097802	41098802	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016689)	promoter-TSS (NM_016689)	-119.0	NM_016689	11828.0	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	4.58	2.3	1.85	5.4	1.87	8.84	2.11	1.33	1.25
Merged-chr2-31094774-1	chr2	31094274	31095274	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	1726.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	8.58	8.75	15.72	12.14	4.67	4.82	6.34	7.07	6.25
Merged-chr3-14893210-1	chr3	14892710	14893710	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357334, intron 3 of 7)	intron (NM_001357334, intron 3 of 7)	6922.0	NM_009801	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	8.58	5.07	1.85	6.75	4.2	1.61	4.22	0.88	1.25
Merged-chr4-55838646-2	chr4	55838150	55839150	+	646.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-306175.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	4.0	2.76	0.92	2.7	2.8	1.61	3.17	1.33	2.5
Merged-chr5-136566420-2	chr5	136565948	136566948	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291233)	promoter-TSS (NM_001291233)	-467.0	NM_001291233	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	36.04	24.42	17.57	33.06	31.72	33.76	34.85	33.16	18.74
Merged-chr2-126712740-2	chr2	126712236	126713236	+	646.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019729, intron 1 of 18)	intron (NM_019729, intron 1 of 18)	5408.0	NM_019729	84092.0	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	78.94	76.95	63.82	70.17	72.78	69.13	100.34	99.93	57.46
Merged-chr5-64377889-3	chr5	64377402	64378402	+	646.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	90040.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	173.33	145.15	81.4	127.52	84.44	102.08	154.2	157.41	105.55
Merged-chr6-72535348-3	chr6	72534859	72535859	+	646.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9032.0	NM_007599	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	10.87	5.99	1.85	4.05	7.93	9.65	8.45	5.75	13.12
Merged-chr18-35540211-3	chr18	35539716	35540716	+	646.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13194.0	NR_038073	100503380.0	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	2.29	1.84	1.85	3.37	1.4	0.8	1.06	3.1	1.87
Merged-chr3-90005148-2	chr3	90004642	90005642	+	646.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001165988)	TTS (NM_001165988)	6068.0	NR_106129	102465771.0		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	30.89	29.49	14.8	31.04	21.93	24.92	13.73	27.41	15.61
Merged-chr2-126658581-2	chr2	126658097	126659097	+	646.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355108, intron 1 of 7)	intron (NM_001355108, intron 1 of 7)	16755.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	5.15	4.61	0.0	9.45	5.6	3.22	2.11	0.0	1.87
Merged-chrX-139480158-2	chrX	139479667	139480667	+	646.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346522)	promoter-TSS (NM_001346522)	-200.0	NM_175326	102871.0	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325|Radx	RIKEN cDNA D330045A20 gene	protein-coding	0.57	0.92	2.77	1.35	1.87	0.0	3.17	0.44	0.62
Merged-chr9-71616203-1	chr9	71615703	71616703	+	646.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23843.0	NM_001033208	102371.0	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	1.72	5.07	5.55	3.37	1.87	0.0	6.34	1.77	2.5
Merged-chr12-72768433-3	chr12	72767935	72768935	+	646.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008910, intron 1 of 5)	intron (NM_008910, intron 1 of 5)	7224.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	8.58	9.68	12.02	6.75	5.6	8.04	6.34	6.63	11.24
Merged-chr1-63113007-3	chr1	63112518	63113518	+	646.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114609, intron 1 of 11)	intron (NM_001114609, intron 1 of 11)	1249.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	90.96	82.48	68.45	83.66	100.77	83.59	101.39	92.86	58.08
Merged-chr7-19744791-3	chr7	19744288	19745288	+	646.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	intron (NM_008990, intron 1 of 8)	4785.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	13.16	5.07	12.95	4.72	5.6	6.43	7.39	3.1	8.12
Merged-chr1-153895170-3	chr1	153894682	153895682	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3536.0	NM_178244	240819.0	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	12.01	11.06	11.1	10.12	2.8	9.65	7.39	4.42	8.74
Merged-chr5-74253883-3	chr5	74253399	74254399	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	58573.0	NM_026878	68939.0	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	10.87	8.75	13.87	12.82	10.73	18.49	10.56	8.4	8.12
Merged-chr2-90572253-3	chr2	90571764	90572764	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	8383.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	62.35	55.29	48.1	55.33	27.99	51.44	54.92	59.69	38.1
Merged-chr4-11192325-3	chr4	11191817	11192817	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001282943, intron 1 of 11)	intron (NM_001282943, intron 1 of 11)	608.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	5.15	2.76	8.32	2.7	5.6	4.82	12.67	4.86	11.24
Merged-chr18-24045863-3	chr18	24045341	24046341	+	646.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-25028.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	4.0	0.92	0.0	4.72	3.73	1.61	1.06	5.31	1.25
Merged-chr9-50528031-2	chr9	50527524	50528524	+	646.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011220, intron 1 of 5)	intron (NM_011220, intron 1 of 5)	617.0	NM_011220	19286.0	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	63.5	58.52	33.3	56.0	49.45	36.17	68.65	67.65	32.48
Merged-chr16-34096001-2	chr16	34095517	34096517	+	646.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-128979.0	NM_009471	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	4.58	4.15	6.47	3.37	5.13	3.22	1.06	0.44	1.25
Merged-chr9-25559401-2	chr9	25558911	25559911	+	646.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	Lx4B|LINE|L1	77814.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	13.73	8.75	7.4	5.4	3.27	8.04	6.34	18.13	5.0
Merged-chr16-73964328-2	chr16	73963825	73964825	+	646.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358493, intron 14 of 28)	intron (NM_001358493, intron 14 of 28)	377742.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.57	6.45	1.85	4.72	3.73	8.04	4.22	1.33	3.75
Merged-chr10-39770802-2	chr10	39770278	39771278	+	646.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011264, intron 1 of 31)	B2_Mm1a|SINE|B2	38618.0	NM_011264	19714.0	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	19.45	25.34	19.42	15.52	7.93	5.63	27.46	26.09	13.74
Merged-chr13-37482793-3	chr13	37482291	37483291	+	646.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137446.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	60.07	23.5	39.77	33.06	29.39	58.68	22.18	19.46	13.74
Merged-chr2-60282103-1	chr2	60281603	60282603	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025422, intron 1 of 4)	B4A|SINE|B4	2381.0	NM_025422	66205.0	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	43.48	72.8	46.25	60.05	55.98	61.89	73.93	52.18	37.47
Merged-chr7-100979317-1	chr7	100978817	100979817	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14951.0	NM_183168	233571.0	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	6.29	1.84	12.95	9.45	2.8	4.82	8.45	0.88	1.25
Merged-chr13-113634970-1	chr13	113634470	113635470	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A_|LTR|ERVL	-16406.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	10.3	11.06	3.7	9.45	4.2	4.82	6.34	9.29	3.12
Merged-chr8-26345257-1	chr8	26344757	26345757	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	187088.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.57	5.53	1.85	2.7	2.8	3.22	2.11	0.44	4.37
Merged-chr1-43091921-2	chr1	43091432	43092432	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013025, intron 2 of 12)	intron (NM_001013025, intron 2 of 12)	554.0	NM_001357299	73122.0	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	94.96	103.22	107.29	94.46	84.44	100.47	91.89	87.11	51.21
Merged-chr17-30215863-1	chr17	30215363	30216363	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	180317.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	10.3	5.53	14.8	10.12	11.2	0.0	7.39	6.63	8.74
Merged-chr15-58383619-1	chr15	58383119	58384119	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027211, intron 1 of 8)	intron (NM_027211, intron 1 of 8)	5655.0	NM_027211	69787.0	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	8.01	7.83	1.85	2.7	1.87	2.41	6.34	1.77	2.5
Merged-chr4-95008385-1	chr4	95007885	95008885	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29285.0	NM_177239	320713.0	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	3.43	1.38	0.92	12.14	2.8	0.0	4.22	2.21	2.5
Merged-chr11-50208230-2	chr11	50207725	50208725	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290769, intron 1 of 7)	intron (NM_001290769, intron 1 of 7)	2595.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	17.73	15.21	7.4	16.19	12.6	19.29	8.45	8.4	5.0
Merged-chr1-138983164-1	chr1	138982664	138983664	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	5507.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	41.76	45.62	49.02	61.4	42.92	45.01	73.93	62.35	38.72
Merged-chr18-20749608-1	chr18	20749108	20750108	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3204.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	41.19	24.42	14.8	54.65	45.25	42.6	64.43	60.13	13.74
Merged-chr2-170206492-1	chr2	170205992	170206992	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63817.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	10.3	14.75	16.65	24.29	3.27	12.86	13.73	16.36	13.74
Merged-chr13-41358121-1	chr13	41357621	41358621	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	880.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	29.75	20.27	16.65	19.57	14.93	9.65	9.51	19.46	3.12
Merged-chr8-94485488-1	chr8	94484988	94485988	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033207, intron 11 of 48)	B3A|SINE|B2	12725.0	NM_001033207	434341.0	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	15.45	9.22	4.62	6.75	9.8	12.86	20.07	16.8	15.61
Merged-chr18-47366454-1	chr18	47365954	47366954	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311097, intron 1 of 17)	CpG	2414.0	NM_018744	20358.0	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	2.86	1.38	3.7	4.05	1.4	3.22	2.11	1.77	2.5
Merged-chr10-69205376-1	chr10	69204876	69205876	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3176.0	NM_001252636	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	5.72	6.45	3.7	5.4	4.67	8.04	13.73	6.63	8.74
Merged-chr4-145361302-2	chr4	145360805	145361805	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-46158.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	5.72	1.38	1.85	6.75	0.93	6.43	5.28	2.21	2.5
Merged-chr16-10970793-3	chr16	10970291	10971291	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	22330.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	58.92	52.07	60.12	56.68	47.12	66.71	52.81	45.1	44.97
Merged-chr9-37656155-1	chr9	37655655	37656655	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025289, intron 1 of 8)	intron (NM_025289, intron 1 of 8)	1157.0	NM_025289	21376.0	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	10.87	18.89	10.17	12.82	16.33	16.88	15.84	12.38	11.24
Merged-chr9-94615491-2	chr9	94615001	94616001	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54391.0	NM_177909	331004.0	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	6.29	18.89	7.4	18.89	18.66	17.68	22.18	20.78	8.74
Merged-chr18-35652927-1	chr18	35652427	35653427	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001270646, exon 1 of 1)	exon (NM_001270646, exon 1 of 1)	2272.0	NM_001270646	381148.0	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	2.29	2.76	0.0	7.42	2.33	1.61	7.39	3.1	3.75
Merged-chr8-105534119-1	chr8	105533619	105534619	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	15373.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	14.3	12.44	13.87	10.8	12.13	8.04	11.62	5.75	7.49
Merged-chr9-89200047-1	chr9	89199547	89200547	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007534, intron 1 of 1)	B2_Mm2|SINE|B2	774.0	NM_007534	12045.0	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	122.42	142.38	43.47	106.61	83.97	60.28	113.01	111.87	54.33
Merged-chr3-109063241-1	chr3	109062741	109063741	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17258.0	NM_029054	74686.0	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	6.29	6.91	3.7	11.47	5.13	1.61	4.22	6.63	2.5
Merged-chrX-61664211-1	chrX	61663711	61664711	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-45405.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	19.45	19.35	12.02	18.22	19.13	8.04	49.64	43.77	16.24
Merged-chr7-90142359-1	chr7	90141859	90142859	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	12146.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	32.61	43.77	27.75	26.99	31.26	36.17	43.3	39.35	21.86
Merged-chr17-31664949-3	chr17	31664459	31665459	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6195.0	NM_001357907	108121.0	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	3.43	1.84	1.85	0.67	1.4	3.22	1.06	0.0	0.0
Merged-chr15-68317125-1	chr15	68316625	68317625	+	646.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20385.0	NR_029534	387226.0		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	14.3	13.82	20.35	13.49	18.19	14.47	21.12	26.09	12.49
Merged-chr3-89378986-1	chr3	89378486	89379486	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001355206, exon 4 of 4)	3' UTR (NM_001355206, exon 4 of 4)	8685.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	20.59	10.6	12.95	11.47	10.26	25.72	10.56	18.13	13.74
Merged-chr1-157313649-1	chr1	157313149	157314149	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	A-rich|Low_complexity|Low_complexity	-98703.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	1.14	4.61	3.7	8.1	4.2	16.88	1.06	7.07	0.62
Merged-chr11-114821451-1	chr11	114820951	114821951	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22527.0	NM_181749	217302.0	Mm.269127	NM_181749	ENSMUSG00000034677	Gpr142	PGR2	G protein-coupled receptor 142	protein-coding	19.45	6.91	1.85	11.47	7.0	12.86	10.56	6.63	6.25
Merged-chr11-23565949-1	chr11	23565449	23566449	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-7107.0	NR_004857	100134990.0	Mm.247328	NR_004857	ENSMUSG00000085415	Selenok-ps1	Gm12060	selenoprotein K, pseudogene 1	pseudo	2.29	2.76	1.85	2.02	2.33	0.0	4.22	0.0	1.25
Merged-chr6-97357194-1	chr6	97356694	97357694	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	102092.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	6.86	10.14	10.17	2.7	6.53	11.25	5.28	3.54	1.87
Merged-chr10-86452519-1	chr10	86452019	86453019	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013722, intron 2 of 13)	intron (NM_013722, intron 2 of 13)	46377.0	NM_001164495	27204.0	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.0	0.0	0.92	0.0	0.93	0.0	1.06	0.44	1.25
Merged-chr12-11230517-1	chr12	11230017	11231017	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21569.0	NM_019544	56184.0	Mm.117113	NM_019544	ENSMUSG00000047002	Msgn1	Msgn|pMsgn1	mesogenin 1	protein-coding	5.15	7.83	10.17	9.45	7.46	22.51	2.11	3.54	1.25
Merged-chr9-90227418-1	chr9	90226918	90227918	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_194334, exon 5 of 13)	exon (NM_194334, exon 5 of 13)	43351.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	59.49	64.05	57.35	63.42	56.91	53.85	50.7	65.88	42.47
Merged-chr2-10372628-1	chr2	10372128	10373128	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177386, intron 1 of 22)	CpG	192.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.57	0.46	1.85	0.67	0.47	1.61	1.06	0.44	3.12
Merged-chr10-68916323-1	chr10	68915823	68916823	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	192577.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.0	2.3	0.0	2.02	3.27	1.61	4.22	0.88	1.25
Merged-chr1-123905940-1	chr1	123905440	123906440	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199021, intron 1 of 25)	intron (NM_199021, intron 1 of 25)	139619.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	7.44	6.45	14.8	10.8	4.67	8.84	8.45	7.52	11.87
Merged-chr3-88244324-1	chr3	88243824	88244824	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021375, intron 8 of 9)	intron (NM_021375, intron 8 of 9)	10360.0	NM_021375	58176.0	Mm.103777	NM_021375	ENSMUSG00000104445	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.58	2.3	3.7	2.7	1.4	4.82	3.17	3.54	1.25
Merged-chr13-107782846-1	chr13	107782346	107783346	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 3 of 14)	intron (NM_145456, intron 3 of 14)	95449.0	NR_045900	72257.0	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	20.02	13.36	16.65	12.82	20.06	16.08	8.45	9.73	7.49
Merged-chr15-35150477-2	chr15	35149960	35150960	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	Lx7|LINE|L1	5346.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	5.15	5.07	1.85	5.4	5.13	10.45	8.45	3.98	3.75
Merged-chr15-67095552-1	chr15	67095052	67096052	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81330.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	2.29	9.22	7.4	6.75	5.13	4.82	3.17	5.75	5.0
Merged-chr15-95799342-1	chr15	95798842	95799842	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175344, intron 1 of 19)	intron (NM_175344, intron 1 of 19)	8499.0	NM_001253813	105722.0	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	98.39	107.36	98.97	91.76	92.37	98.06	102.45	121.6	76.82
Merged-chr15-80060062-1	chr15	80059562	80060562	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	18517.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	9.15	8.29	9.25	10.8	7.46	18.49	22.18	17.69	9.99
Merged-chr13-4759834-1	chr13	4759334	4760334	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	-150670.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	14.87	7.37	12.95	4.72	8.4	20.09	5.28	4.86	7.49
Merged-chr17-37002804-1	chr17	37002304	37003304	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033137)	promoter-TSS (NR_033137)	279.0	NM_001013745	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	8.58	6.45	1.85	2.7	4.2	3.22	2.11	1.77	3.75
Merged-chr2-169008515-1	chr2	169008015	169009015	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30246.0	NR_040326	75508.0	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	10.3	12.9	19.42	14.17	17.73	12.86	21.12	17.24	8.74
Merged-chr19-45631142-1	chr19	45630642	45631642	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013907, intron 4 of 8)	intron (NM_013907, intron 4 of 8)	29051.0	NM_013907	30838.0	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	12.59	14.28	11.1	18.22	7.0	6.43	15.84	9.29	13.12
Merged-chr14-8081419-1	chr14	8080919	8081919	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025938, intron 1 of 5)	RMER10A|LTR|ERVL	1106.0	NM_025938	67053.0	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	35.47	21.66	20.35	27.66	41.52	28.94	41.19	20.78	16.24
Merged-chr18-52457900-1	chr18	52457400	52458400	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7793.0	NM_026040	67222.0	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	2.86	4.15	3.7	4.05	2.8	4.02	3.17	5.31	1.25
Merged-chr4-107553892-1	chr4	107553392	107554392	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	119173.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	9.72	8.29	9.25	2.02	2.8	0.0	3.17	0.44	1.25
Merged-chr2-142889910-1	chr2	142889410	142890410	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	11554.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.57	3.23	0.0	4.72	5.6	3.22	6.34	7.96	4.37
Merged-chr1-85111774-1	chr1	85111274	85112274	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1921.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	10.87	7.83	13.87	31.71	20.99	16.88	22.18	8.4	9.99
Merged-chr14-44052717-1	chr14	44052217	44053217	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46299.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	25.17	18.43	31.45	18.89	27.52	25.72	10.56	13.27	6.25
Merged-chr4-148169847-1	chr4	148169347	148170347	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9179.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	5.15	4.15	1.85	3.37	3.73	4.02	3.17	3.1	5.0
Merged-chr19-22108695-1	chr19	22108195	22109195	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30422.0	NM_001035239	226025.0	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.57	4.15	1.85	6.75	1.4	6.43	2.11	6.19	9.99
Merged-chr18-63863952-1	chr18	63863452	63864452	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014981, intron 20 of 27)	intron (NM_001014981, intron 20 of 27)	155257.0	NM_001014981	104082.0	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	8.58	4.15	7.4	8.77	2.8	1.61	7.39	4.42	9.37
Merged-chr1-134961788-2	chr1	134961287	134962287	+	646.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001278115)	promoter-TSS (NM_001278115)	-778.0	NM_026024	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	16.02	11.06	5.55	10.8	8.4	11.25	7.39	6.63	3.75
Merged-chr8-84416254-1	chr8	84415754	84416754	+	646.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 1 of 47)	intron (NM_001252060, intron 1 of 47)	890.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	77.23	51.15	61.97	87.71	37.32	45.82	0.0	0.44	3.75
Merged-chr12-36217139-3	chr12	36216630	36217630	+	645.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361098, intron 5 of 8)	intron (NM_001361098, intron 5 of 8)	1088.0	NM_027699	71156.0	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	8.58	7.83	3.7	5.4	14.46	8.84	11.62	8.4	8.74
Merged-chr11-62820404-2	chr11	62819950	62820950	+	645.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_053169, exon 1 of 6)	5' UTR (NM_053169, exon 1 of 6)	197.0	NM_053169	94092.0	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	6.29	2.76	5.55	7.42	2.8	6.43	12.67	4.42	2.5
Merged-chr7-141559788-2	chr7	141559296	141560296	+	645.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	polypyrimidine|Low_complexity|Low_complexity	-2384.0	NM_001357068	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	50.91	71.88	74.92	55.33	46.65	84.4	71.82	50.85	49.96
Merged-chr4-106981624-3	chr4	106981125	106982125	+	645.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	58440.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	6.29	6.45	2.77	4.05	7.93	11.25	6.34	5.31	6.87
Merged-chr12-111575329-3	chr12	111574839	111575839	+	645.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045295)	promoter-TSS (NR_045295)	829.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	151.59	110.59	139.67	58.7	39.65	47.42	78.16	69.42	37.47
Merged-chr14-70784252-2	chr14	70783743	70784743	+	645.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9862.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	12.59	11.52	16.65	6.75	4.2	20.9	8.45	7.52	11.87
Merged-chr5-135251220-2	chr5	135250717	135251717	+	645.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010246)	promoter-TSS (NM_010246)	-170.0	NM_010246	14371.0	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	3.43	0.0	1.85	0.67	0.0	3.22	3.17	0.88	3.75
Merged-chr2-129898337-2	chr2	129897839	129898839	+	645.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-96880.0	NR_029452	654409.0	Mm.305555	NR_029452		Stk35os1	4932416H05Rik	serine/threonine kinase 35, opposite strand 1	ncRNA	14.3	19.81	5.55	9.45	18.19	38.58	16.9	10.61	21.23
Merged-chr17-42480332-1	chr17	42479832	42480832	+	645.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355270, intron 2 of 2)	RCHARR1|DNA|hAT-Charlie	130981.0	NM_181753	353344.0	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	0.57	1.38	1.85	4.05	2.33	3.22	10.56	10.61	7.49
Merged-chrX-71376292-2	chrX	71375793	71376793	+	645.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016985, intron 2 of 14)	intron (NM_016985, intron 2 of 14)	11533.0	NM_001313706	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	10.3	5.53	7.4	4.05	4.2	4.02	4.22	2.65	8.74
Merged-chr9-22962521-3	chr9	22962026	22963026	+	645.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-260550.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	2.86	2.76	7.4	2.02	9.33	3.22	3.17	1.77	5.0
Merged-chr9-115740204-1	chr9	115739704	115740704	+	645.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-169251.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.0	1.38	3.7	2.02	1.87	1.61	3.17	3.1	9.99
Merged-chr8-70759235-3	chr8	70758751	70759751	+	645.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009001)	TTS (NM_009001)	1670.0	NM_183170	234384.0	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	4.58	5.07	4.62	13.49	7.93	16.88	13.73	2.21	8.12
Merged-chr5-95925667-1	chr5	95925167	95926167	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31272.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	14.87	16.13	10.17	9.45	5.6	8.84	13.73	4.86	8.74
Merged-chr17-63875638-1	chr17	63875138	63876138	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037997, intron 1 of 18)	MLTR31FA_MM|LTR|ERVK	-2428.0	NM_001286415	14158.0	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	5.15	4.61	3.7	7.42	8.4	4.82	2.11	7.52	3.75
Merged-chr16-14477765-3	chr16	14477242	14478242	+	645.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84575.0	NR_033556	545280.0	Mm.123679	NR_033556		A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	22.88	16.13	12.02	12.14	7.46	1.61	10.56	12.38	14.99
Merged-chr7-102016307-3	chr7	102015811	102016811	+	645.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010531, exon 5 of 7)	exon (NM_010531, exon 5 of 7)	1844.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	76.66	80.64	97.12	98.51	60.18	109.32	110.9	103.91	66.2
Merged-chr7-100474855-2	chr7	100474321	100475321	+	645.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009464, intron 1 of 6)	intron (NM_009464, intron 1 of 6)	1830.0	NM_009464	22229.0	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	17.16	17.05	25.9	34.41	28.92	13.66	8.45	9.29	9.37
Merged-chr4-97777278-2	chr4	97776778	97777778	+	645.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001122953)	promoter-TSS (NM_001122953)	-348.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	22.31	27.65	24.97	31.04	20.53	41.8	48.58	30.95	28.73
Merged-chr14-122476030-2	chr14	122475522	122476522	+	645.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045046)	promoter-TSS (NR_045046)	638.0	NM_009574	22772.0	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	4.0	0.46	3.7	3.37	0.47	0.0	1.06	0.44	4.37
Merged-chr19-55235744-2	chr19	55235193	55236193	+	645.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081076, intron 2 of 20)	intron (NM_001081076, intron 2 of 20)	5543.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	10.3	13.36	10.17	31.04	20.99	18.49	32.74	35.37	15.61
Merged-chr13-52283611-2	chr13	52283086	52284086	+	645.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	186845.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	1.72	4.15	1.85	4.05	1.87	0.0	1.06	1.77	0.0
Merged-chr1-43939494-3	chr1	43938992	43939992	+	645.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	5498.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	27.46	16.59	12.95	19.57	18.19	16.88	23.24	16.8	19.98
Merged-chr15-53585337-3	chr15	53584827	53585827	+	645.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	28952.0	NR_039538	100628567.0		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	14.3	8.75	11.1	8.77	9.33	4.82	13.73	7.52	6.87
Merged-chr13-30696521-1	chr13	30696021	30697021	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134068, intron 4 of 7)	intron (NM_134068, intron 4 of 7)	36462.0	NM_134068	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	84.09	134.55	48.1	80.29	72.31	67.52	64.43	61.9	45.59
Merged-chr13-19691031-1	chr13	19690531	19691531	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167909, intron 5 of 14)	intron (NM_001167909, intron 5 of 14)	6729.0	NM_001167909	73412.0	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	36.04	51.15	20.35	14.17	20.99	22.51	20.07	31.84	19.36
Merged-chr1-136605504-1	chr1	136605004	136606004	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19397.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.58	9.68	3.7	10.12	11.66	3.22	7.39	9.29	3.12
Merged-chr3-75298020-1	chr3	75297520	75298520	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27942.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	55.49	66.81	65.67	75.57	47.12	29.74	62.31	78.71	32.48
Merged-chr11-115709351-2	chr11	115708821	115709821	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008163)	promoter-TSS (NM_008163)	-724.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	46.34	37.32	33.3	50.6	53.65	41.8	77.1	78.26	43.09
Merged-chr9-61020169-1	chr9	61019669	61020669	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040767)	TTS (NR_040767)	3100.0	NR_040767	330956.0	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	5.15	2.76	9.25	2.7	1.4	3.22	3.17	4.86	1.25
Merged-chr3-89183134-2	chr3	89182625	89183625	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001014995)	promoter-TSS (NM_001014995)	-18.0	NM_001355760	68521.0	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	2.29	5.07	3.7	1.35	3.73	2.41	2.11	2.65	1.87
Merged-chr9-111052733-2	chr9	111052230	111053230	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4514.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	6.86	5.07	3.7	5.4	2.8	6.43	5.28	3.54	6.25
Merged-chr17-43407668-1	chr17	43407168	43408168	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357332, intron 2 of 20)	intron (NM_001357332, intron 2 of 20)	18202.0	NM_001081178	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	2.86	2.76	5.55	2.7	3.27	3.22	3.17	1.33	1.25
Merged-chr2-150914298-1	chr2	150913798	150914798	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027014, intron 2 of 6)	L2b|LINE|L2	4704.0	NM_001163476	69270.0	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	27.46	26.73	12.02	25.64	24.72	29.74	52.81	49.52	25.61
Merged-chr11-46675924-1	chr11	46675424	46676424	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161355, intron 8 of 8)	intron (NM_001161355, intron 8 of 8)	14433.0	NM_001161356	171284.0	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.0	0.92	1.85	3.37	6.53	3.22	2.11	2.21	3.75
Merged-chr6-124661340-2	chr6	124660852	124661852	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-1752.0	NR_149320	14792.0	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	13.73	8.75	17.57	14.17	7.0	7.23	13.73	7.07	16.86
Merged-chr15-25567374-1	chr15	25566874	25567874	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55176.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	30.89	11.06	8.32	4.72	5.13	0.0	5.28	6.19	3.75
Merged-chr7-92666847-2	chr7	92666400	92667400	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029078, intron 1 of 15)	intron (NM_029078, intron 1 of 15)	3012.0	NM_029078	74737.0	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	13.73	14.75	12.02	11.47	12.13	13.66	13.73	11.5	18.74
Merged-chr18-11700985-3	chr18	11700492	11701492	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081223, intron 6 of 18)	intron (NM_001081223, intron 6 of 18)	43643.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	13.16	12.44	21.27	12.14	3.73	14.47	27.46	9.29	11.24
Merged-chr11-59545238-3	chr11	59544706	59545706	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153314, intron 2 of 9)	B3|SINE|B2	2520.0	NR_153314	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	83.52	91.24	54.57	40.48	15.86	19.29	39.08	29.63	39.97
Merged-chr9-90056629-2	chr9	90056120	90057120	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	intron (NM_001312649, intron 1 of 10)	2353.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	27.46	35.02	24.97	22.27	16.79	11.25	84.49	75.61	39.97
Merged-chr12-84803249-2	chr12	84802759	84803759	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013589, intron 16 of 34)	MTC|LTR|ERVL-MaLR	29989.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	66.36	39.17	49.95	55.33	27.06	28.94	43.3	32.72	17.49
Merged-chr3-96098342-2	chr3	96097853	96098853	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6174.0	NM_001025613	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	22.31	10.14	11.1	19.57	6.53	11.25	19.01	15.03	14.99
Merged-chr9-40686325-1	chr9	40685825	40686825	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_133733, exon 1 of 7)	5' UTR (NM_133733, exon 1 of 7)	361.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	12.01	2.3	0.0	0.67	3.73	0.0	0.0	1.33	5.0
Merged-chr13-119754875-1	chr13	119754375	119755375	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 1 of 3)	intron (NM_175538, intron 1 of 3)	1007.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	2.86	0.92	1.85	5.4	4.67	9.65	8.45	2.65	1.87
Merged-chr17-78248585-3	chr17	78248070	78249070	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015800, intron 2 of 16)	intron (NM_015800, intron 2 of 16)	48322.0	NM_015800	50766.0	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	67.5	55.75	20.35	49.93	32.66	27.33	62.31	56.16	30.6
Merged-chr5-23415982-3	chr5	23415509	23416509	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18344.0	NR_040469	269630.0	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	12.59	5.53	11.1	12.14	3.73	3.22	12.67	8.84	0.0
Merged-chr13-34871659-1	chr13	34871159	34872159	+	645.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3835.0	NM_013830	19134.0	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	8.01	11.52	5.55	12.14	6.53	9.65	16.9	11.5	2.5
Merged-chr9-65588044-2	chr9	65587526	65588526	+	645.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357526, exon 2 of 13)	exon (NM_001357526, exon 2 of 13)	866.0	NM_001357527	208084.0	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	1.72	5.07	16.65	4.72	2.8	1.61	7.39	2.65	0.0
Merged-chr17-36257796-3	chr17	36257321	36258321	+	645.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026308)	promoter-TSS (NM_026308)	25.0	NM_026308	67676.0	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	28.6	25.8	17.57	20.24	20.99	25.72	30.63	27.41	21.23
Merged-chr5-139505273-3	chr5	139504773	139505773	+	645.43335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18478.0	NR_040701	74973.0	Mm.141282	NR_040701	ENSMUSG00000106056	4930500L23Rik	-	RIKEN cDNA 4930500L23 gene	ncRNA	0.57	7.37	0.0	0.67	1.4	0.0	4.22	2.21	2.5
Merged-chr2-156475524-3	chr2	156475052	156476052	+	645.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001006664)	promoter-TSS (NM_001006664)	18.0	NM_001006664	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	14.3	4.61	5.55	4.72	4.2	5.63	5.28	4.86	5.0
Merged-chr9-13559018-2	chr9	13558531	13559531	+	645.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60958.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	12.01	23.96	5.55	16.19	13.53	9.65	7.39	14.15	5.0
Merged-chr9-88547384-2	chr9	88546882	88547882	+	645.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142943)	promoter-TSS (NM_001142943)	-638.0	NM_001163061	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	10.3	17.51	19.42	11.47	14.0	28.94	12.67	19.46	20.61
Merged-chr16-36711005-2	chr16	36710502	36711502	+	645.349976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285788, intron 3 of 7)	B3A|SINE|B2	17024.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	155.03	130.4	65.67	180.15	156.28	77.16	151.03	138.4	59.95
Merged-chr19-34254610-2	chr19	34254117	34255117	+	645.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007392, intron 1 of 8)	intron (NM_007392, intron 1 of 8)	756.0	NM_007392	11475.0	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMAalpha|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	6.86	0.92	5.55	8.77	4.2	6.43	8.45	3.1	5.0
Merged-chr11-67657874-2	chr11	67657379	67658379	+	645.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109657, intron 5 of 13)	intron (NM_001109657, intron 5 of 13)	-37447.0	NM_009038	19674.0	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	2.29	2.76	6.47	3.37	3.73	3.22	5.28	1.33	2.5
Merged-chr15-76009418-1	chr15	76008918	76009918	+	645.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	80.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	14.3	9.68	9.25	20.92	3.27	19.29	12.67	7.52	18.74
Merged-chr10-75593329-1	chr10	75592829	75593829	+	645.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	AT_rich|Low_complexity|Low_complexity	3948.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	8.01	11.06	3.7	7.42	9.33	0.0	3.17	7.96	6.25
Merged-chr5-34372724-3	chr5	34372224	34373224	+	645.311096	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243123, intron 1 of 20)	intron (NM_001243123, intron 1 of 20)	2791.0	NM_001243123	231128.0	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	14.3	10.14	5.55	10.12	7.0	4.82	13.73	15.92	14.99
Merged-chr10-127059985-3	chr10	127059508	127060508	+	645.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001033262, exon 1 of 4)	5' UTR (NM_001033262, exon 1 of 4)	176.0	NM_001033262	216438.0	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	16.59	5.07	1.85	8.77	4.67	11.25	9.51	1.77	0.0
Merged-chr10-85351237-1	chr10	85350737	85351737	+	645.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-35577.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.14	1.38	1.85	0.67	3.73	1.61	22.18	12.38	18.74
Merged-chr1-130716903-4	chr1	130716327	130717327	+	645.208313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178691)	promoter-TSS (NM_178691)	-500.0	NM_178691	226418.0	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	149.31	208.27	98.05	144.39	153.01	164.78	170.05	195.0	93.68
Merged-chr18-62122083-2	chr18	62121591	62122591	+	645.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3A|LINE|L1	57890.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	9.72	5.53	0.0	4.72	1.87	12.86	5.28	7.52	5.0
Merged-chr17-45430566-3	chr17	45430062	45431062	+	645.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152810, intron 1 of 15)	L1_Mus1|LINE|L1	3145.0	NM_152810	71702.0	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	8.01	5.99	12.95	6.75	7.93	18.49	4.22	7.07	1.87
Merged-chr14-73403557-1	chr14	73403057	73404057	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18268.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	16.02	17.51	14.8	14.17	20.99	28.13	16.9	15.48	16.24
Merged-chr17-65681129-1	chr17	65680629	65681629	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133685, intron 5 of 6)	(GGA)n|Simple_repeat|Simple_repeat	-38925.0	NM_001146002	213272.0	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	6.29	5.53	5.55	6.75	4.67	11.25	14.79	8.84	7.49
Merged-chr1-136608567-1	chr1	136608067	136609067	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16334.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	28.03	24.42	30.52	31.71	15.86	30.54	43.3	30.51	26.85
Merged-chr17-87152759-1	chr17	87152259	87153259	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42183.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	30.32	29.03	32.37	39.13	20.06	30.54	2.11	3.54	5.0
Merged-chr19-41329020-1	chr19	41328520	41329520	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 4 of 16)	intron (NM_031376, intron 4 of 16)	56050.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	20.02	18.43	10.17	7.42	17.26	17.68	15.84	21.22	23.11
Merged-chr1-106632139-1	chr1	106631639	106632639	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	82151.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	1.72	2.76	0.0	2.02	7.0	3.22	6.34	5.31	2.5
Merged-chr16-94565565-1	chr16	94565065	94566065	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4641.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	18.88	8.29	11.1	13.49	9.8	15.27	8.45	6.19	7.49
Merged-chr11-75541836-1	chr11	75541336	75542336	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	-9593.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	66.36	33.64	43.47	76.24	35.92	45.82	52.81	56.16	31.23
Merged-chr7-4148769-1	chr7	4148269	4149269	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172736)	TTS (NM_172736)	1103.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	180.77	223.94	220.14	169.35	167.01	172.01	161.6	198.53	168.0
Merged-chr7-81261761-1	chr7	81261261	81262261	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	47957.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	6.29	8.29	2.77	5.4	7.46	5.63	6.34	2.21	1.25
Merged-chr17-15535999-2	chr17	15535562	15536562	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8761.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	4.58	2.3	2.77	6.75	4.67	3.22	4.22	4.42	5.0
Merged-chr8-86585811-1	chr8	86585311	86586311	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19221.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	4.0	2.3	3.7	4.72	4.2	0.0	2.11	1.77	1.25
Merged-chr1-180885884-1	chr1	180885384	180886384	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7224.0	NM_177099	320202.0	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	5.15	5.99	11.1	4.05	4.2	8.84	7.39	4.86	15.61
Merged-chr4-3771526-1	chr4	3771026	3772026	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	(TGGA)n|Simple_repeat|Simple_repeat	56562.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	22.88	19.35	38.85	16.19	13.06	27.33	20.07	19.9	16.24
Merged-chr15-63652694-1	chr15	63652194	63653194	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	156045.0	NM_031378	83492.0	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	6.86	5.99	1.85	7.42	3.73	4.02	6.34	3.98	5.0
Merged-chr12-84763813-1	chr12	84763313	84764313	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023409, intron 2 of 3)	RSINE1|SINE|B4	9299.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	61.21	63.59	103.59	43.86	45.25	53.85	76.05	68.54	44.34
Merged-chr3-81264854-1	chr3	81264354	81265354	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	228438.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	6.29	1.84	5.55	8.77	1.87	2.41	3.17	3.1	0.0
Merged-chr14-65359104-1	chr14	65358604	65359604	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	CpG	428.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	33.75	18.89	16.65	22.27	15.39	16.08	30.63	16.36	33.1
Merged-chr5-18038452-1	chr5	18037952	18038952	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75882.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	5.72	4.15	1.85	4.72	6.06	2.41	1.06	2.21	3.75
Merged-chr2-121572000-1	chr2	121571500	121572500	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360084, intron 6 of 13)	intron (NM_001360084, intron 6 of 13)	65277.0	NM_001290986	241627.0	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	2.29	0.46	0.0	3.37	0.93	3.22	2.11	4.42	1.87
Merged-chr5-136253099-2	chr5	136252561	136253561	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 18 of 22)	intron (NM_001291238, intron 18 of 22)	-8121.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	3.43	2.3	0.92	3.37	1.4	3.22	3.17	1.33	1.25
Merged-chr10-111576163-1	chr10	111575663	111576663	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18110.0	NR_045344	71321.0	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	3.43	3.69	7.4	1.35	0.93	0.0	4.22	7.52	5.0
Merged-chr8-83067085-2	chr8	83066586	83067586	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177378, intron 6 of 6)	intron (NM_177378, intron 6 of 6)	-98266.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	22.31	25.8	22.2	22.27	23.33	26.53	34.85	17.24	18.74
Merged-chr6-99188655-1	chr6	99188155	99189155	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	77860.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	16.59	11.98	5.55	19.57	10.26	9.65	11.62	3.98	1.25
Merged-chr3-89214883-1	chr3	89214383	89215383	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013691)	promoter-TSS (NM_013691)	-297.0	NM_013691	21827.0	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	85.81	49.76	14.8	65.45	33.59	28.13	27.46	24.32	11.24
Merged-chr2-13237805-1	chr2	13237305	13238305	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009105, intron 3 of 8)	intron (NM_009105, intron 3 of 8)	33610.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	1.72	2.3	0.0	2.02	0.93	1.61	5.28	1.77	3.12
Merged-chr14-46153097-1	chr14	46152597	46153597	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	69070.0	NR_002875	218963.0	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.0	5.53	0.0	7.42	5.6	8.04	3.17	3.1	2.5
Merged-chr12-76580846-1	chr12	76580346	76581346	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013675, exon 36 of 36)	3' UTR (NM_013675, exon 36 of 36)	-32921.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	2.29	7.37	3.7	3.37	6.06	6.43	6.34	2.65	6.87
Merged-chr19-41347545-1	chr19	41347045	41348045	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 2 of 16)	intron (NM_031376, intron 2 of 16)	37525.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	101.83	73.73	101.74	49.93	48.98	68.32	122.52	90.2	75.57
Merged-chr3-95065761-1	chr3	95065261	95066261	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293707, intron 10 of 14)	intron (NM_001293707, intron 10 of 14)	-23147.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	4.58	4.15	11.1	4.05	5.6	3.22	7.39	1.77	2.5
Merged-chr6-115511791-1	chr6	115511291	115512291	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32913.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	5.72	3.23	5.55	6.07	4.67	1.61	5.28	6.63	3.75
Merged-chr16-57535822-1	chr16	57535322	57536322	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-13420.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	96.11	129.94	102.67	104.58	69.51	115.75	110.9	90.64	120.53
Merged-chr11-57791323-2	chr11	57790829	57791829	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10138.0	NR_131042	76516.0	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	6.86	4.61	2.77	2.02	0.93	3.22	2.11	0.0	1.87
Merged-chr17-29045177-2	chr17	29044672	29045672	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12512.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	24.6	22.58	21.27	23.62	19.59	16.88	14.79	12.38	28.1
Merged-chr9-96712906-1	chr9	96712406	96713406	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359959, intron 2 of 2)	ID_B1|SINE|B4	6539.0	NM_001359960	245007.0	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	23.45	41.93	20.35	40.48	61.58	39.39	25.35	41.56	19.36
Merged-chr4-141267984-2	chr4	141267472	141268472	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10467.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	9.15	6.91	11.1	11.47	6.53	6.43	9.51	7.07	8.74
Merged-chr1-88266461-1	chr1	88265961	88266961	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198652, exon 8 of 8)	exon (NM_198652, exon 8 of 8)	2947.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	13.16	14.75	12.02	4.72	12.13	16.08	17.96	11.94	17.49
Merged-chr11-3195385-1	chr11	3194885	3195885	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1922.0	NM_030207	78887.0	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	45.76	79.25	100.82	66.8	63.91	95.65	82.38	65.88	135.52
Merged-chr5-140391013-1	chr5	140390513	140391513	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-1705.0	NM_172277	231834.0	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	44.62	40.09	64.75	31.71	25.19	52.25	25.35	30.51	42.47
Merged-chr14-47375208-2	chr14	47374736	47375736	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145953, intron 1 of 5)	ORR1A2|LTR|ERVL-MaLR	1376.0	NM_001145953	16854.0	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	211.09	233.62	135.04	290.13	210.4	226.67	313.69	396.62	163.0
Merged-chr3-152333955-1	chr3	152333455	152334455	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162375, intron 3 of 13)	intron (NM_001162375, intron 3 of 13)	6452.0	NM_174868	215708.0	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	4.0	1.84	2.77	7.42	1.87	5.63	4.22	1.33	3.75
Merged-chr15-64098633-1	chr15	64098133	64099133	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 26 of 28)	intron (NM_001276461, intron 26 of 28)	-38185.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	27.46	32.25	43.47	19.57	9.8	13.66	55.98	49.08	46.22
Merged-chr6-28832462-1	chr6	28831962	28832962	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-715.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	4.58	4.61	1.85	6.75	4.67	2.41	11.62	2.21	2.5
Merged-chr9-74988241-1	chr9	74987741	74988741	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	intron (NM_153584, intron 1 of 11)	12130.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	4.58	13.82	11.1	8.1	11.66	7.23	25.35	16.8	11.24
Merged-chr7-45572111-1	chr7	45571611	45572611	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243052, intron 1 of 10)	intron (NM_001243052, intron 1 of 10)	832.0	NM_001243052	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	4.0	10.14	11.1	6.07	4.2	8.04	14.79	2.21	9.37
Merged-chr3-95053892-2	chr3	95053409	95054409	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-11295.0	NM_008951	19185.0	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	2.29	3.69	1.85	2.7	1.4	1.61	2.11	2.21	1.25
Merged-chr11-102190249-1	chr11	102189749	102190749	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	550.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	51.48	41.93	72.15	56.68	60.65	62.7	92.94	71.63	26.23
Merged-chr9-57504475-1	chr9	57503975	57504975	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133982, exon 1 of 1)	exon (NM_133982, exon 1 of 1)	373.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	11.44	3.69	4.62	4.05	1.87	4.82	4.22	3.1	3.12
Merged-chr18-12940501-2	chr18	12940001	12941001	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207530, intron 1 of 27)	intron (NM_207530, intron 1 of 27)	1340.0	NM_207530	64291.0	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	18.88	16.59	13.87	18.22	16.79	10.45	27.46	15.48	9.37
Merged-chr5-143626378-2	chr5	143625849	143626849	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011182, intron 1 of 12)	LTR33A_|LTR|ERVL	3902.0	NM_011182	19159.0	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	62.35	58.98	59.2	61.4	52.25	52.25	66.54	44.22	44.97
Merged-chr11-118237144-1	chr11	118236644	118237644	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11448.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	150.45	137.31	126.72	156.53	110.56	141.47	159.48	174.66	112.42
Merged-chr11-50108261-1	chr11	50107761	50108761	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290750, intron 7 of 7)	intron (NM_001290750, intron 7 of 7)	-23099.0	NM_001290759	76795.0	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	91.53	111.97	82.32	95.81	98.9	115.75	136.25	178.19	67.45
Merged-chr17-83665003-1	chr17	83664503	83665503	+	645.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33108.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	39.47	35.02	41.62	6.75	0.47	1.61	4.22	2.21	3.75
Merged-chr5-66141700-1	chr5	66141200	66142200	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	RMER15|LTR|ERVL	9278.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	17.73	19.35	19.42	13.49	20.99	16.88	11.62	15.92	10.62
Merged-chr13-104286508-1	chr13	104286008	104287008	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1327.0	NR_136938	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	172.76	110.13	60.12	191.62	125.49	87.61	184.83	221.08	97.43
Merged-chr2-21117354-1	chr2	21116854	21117854	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88011.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	8.01	7.83	11.1	10.8	7.46	12.86	6.34	6.63	9.99
Merged-chr5-92467620-1	chr5	92467120	92468120	+	645.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007644, intron 2 of 11)	intron (NM_007644, intron 2 of 11)	9063.0	NR_105843	102466159.0		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	78.94	74.65	62.9	70.17	63.91	118.16	96.11	107.45	70.57
Merged-chr1-194984281-1	chr1	194983781	194984781	+	645.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7322.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	9.15	10.6	9.25	16.87	14.93	23.31	9.51	9.73	29.98
Merged-chr6-53064308-3	chr6	53063797	53064797	+	644.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	ORR1E|LTR|ERVL-MaLR	4327.0	NM_173406	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	4.58	8.75	7.4	3.37	5.6	9.65	8.45	6.63	7.49
Merged-chr7-126399696-3	chr7	126399199	126400199	+	644.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2962.0	NM_010900	18020.0	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	2.86	4.15	5.55	2.7	2.33	1.61	2.11	0.44	5.0
Merged-chr17-68172957-2	chr17	68172473	68173473	+	644.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-100824.0	NM_177278	320858.0	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	1.72	1.38	7.4	4.05	4.2	4.82	2.11	0.44	1.25
Merged-chr9-61369582-2	chr9	61369091	61370091	+	644.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2775.0	NM_001083928	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	10.87	9.22	5.55	8.1	6.53	7.23	13.73	3.1	3.12
Merged-chr8-70505092-3	chr8	70504592	70505592	+	644.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151646, intron 2 of 3)	intron (NR_151646, intron 2 of 3)	1334.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	4.0	3.69	2.77	4.05	1.4	3.22	5.28	1.33	3.12
Merged-chr9-44493075-3	chr9	44492560	44493560	+	644.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	-6076.0	NM_030256	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.15	2.3	1.85	8.1	4.2	4.82	4.22	6.19	7.49
Merged-chr2-62638817-2	chr2	62638315	62639315	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027835, intron 2 of 15)	Lx9|LINE|L1	7440.0	NM_027835	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	4.0	4.15	7.4	6.07	8.4	5.63	12.67	11.94	7.49
Merged-chr13-74292366-2	chr13	74291869	74292869	+	644.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009644)	promoter-TSS (NM_009644)	-38.0	NM_001317351	11624.0	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	5.15	1.38	0.92	5.4	3.27	1.61	1.06	2.21	7.49
Merged-chr11-90247991-2	chr11	90247478	90248478	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1498.0	NM_026178	67468.0	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	30.32	23.96	21.27	22.94	11.66	20.09	21.12	13.27	29.35
Merged-chr7-135889502-1	chr7	135889002	135890002	+	644.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173123.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.58	1.84	3.7	4.05	0.93	8.04	1.06	2.65	6.25
Merged-chr17-87314739-3	chr17	87314237	87315237	+	644.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	31851.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	21.17	14.28	7.4	43.86	15.39	9.65	13.73	10.61	9.37
Merged-chr16-30262896-2	chr16	30262413	30263413	+	644.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027904, intron 1 of 1)	intron (NM_027904, intron 1 of 1)	4619.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	3.43	5.07	2.77	4.05	2.33	0.0	10.56	7.07	3.12
Merged-chr2-102946222-1	chr2	102945722	102946722	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44557.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	28.6	25.34	20.35	44.53	30.79	42.6	29.57	22.99	18.74
Merged-chr13-32902746-2	chr13	32902241	32903241	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT-int|LTR|ERVL-MaLR	-4601.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	8.01	2.76	1.85	5.4	3.27	6.43	3.17	2.65	2.5
Merged-chr6-57749374-1	chr6	57748874	57749874	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	46919.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	6.86	10.6	9.25	4.72	6.06	11.25	8.45	3.54	5.0
Merged-chr16-92416655-2	chr16	92416138	92417138	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-16560.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	233.4	210.12	249.74	307.67	248.18	323.12	177.44	216.22	161.13
Merged-chr16-64850928-2	chr16	64850430	64851430	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347245, intron 1 of 8)	intron (NM_001347245, intron 1 of 8)	793.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	40.62	41.01	24.05	58.7	31.26	24.11	50.7	45.1	33.1
Merged-chr3-103927669-1	chr3	103927169	103928169	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356557, intron 1 of 6)	intron (NM_001356557, intron 1 of 6)	13549.0	NM_172684	229675.0	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	30.89	32.72	29.6	28.34	30.32	37.78	41.19	30.95	19.36
Merged-chr16-13755114-1	chr16	13754614	13755614	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001357954, exon 1 of 1)	exon (NM_001357954, exon 1 of 1)	550.0	NM_001357954	432999.0	Mm.60430	NM_001357954		A930007A09Rik	-	RIKEN cDNA A930007A09 gene	protein-coding	28.6	33.18	38.85	22.94	25.19	31.35	17.96	23.43	12.49
Merged-chr9-66877226-1	chr9	66876726	66877726	+	644.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	42479.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	52.63	53.45	32.37	100.53	62.05	52.25	40.14	35.37	21.86
Merged-chr9-122285458-2	chr9	122284953	122285953	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271873, intron 1 of 12)	(G)n|Simple_repeat|Simple_repeat	8970.0	NM_001271873	102566.0	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	10.87	11.52	1.85	12.14	7.46	10.45	10.56	4.86	11.87
Merged-chr11-74532569-2	chr11	74532074	74533074	+	644.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	57584.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	5.72	3.23	4.62	5.4	8.4	12.06	10.56	10.17	7.49
Merged-chr10-8762195-2	chr10	8761660	8762660	+	644.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	123910.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	179.05	223.02	108.22	243.57	190.8	147.9	275.66	299.79	124.91
Merged-chr10-70195935-2	chr10	70195443	70196443	+	644.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-8721.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	63.5	59.44	33.3	48.58	48.05	77.16	77.1	75.61	42.47
Merged-chr6-136989985-2	chr6	136989482	136990482	+	644.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35459.0	NM_023898	78600.0	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	2.29	0.92	5.55	6.07	3.73	5.63	4.22	6.63	3.75
Merged-chr9-44799459-2	chr9	44798984	44799984	+	644.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-237.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	10.87	4.61	5.55	4.05	2.8	2.41	2.11	13.71	3.75
Merged-chr2-92529494-1	chr2	92528994	92529994	+	644.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-62712.0	NR_106080	102466819.0		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	9.72	2.76	1.85	4.72	7.93	12.86	15.84	2.65	3.75
Merged-chr2-128363409-1	chr2	128362909	128363909	+	644.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	65942.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	20.59	16.59	14.8	31.71	30.79	40.19	27.46	18.13	15.61
Merged-chrX-169987461-1	chrX	169986961	169987961	+	644.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 8 of 9)	CpG	-8544.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	5.72	5.53	0.0	5.4	3.27	0.0	32.74	47.75	33.1
Merged-chr10-78043579-3	chr10	78043070	78044070	+	644.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001271549)	promoter-TSS (NM_001271549)	40.0	NM_001271552	11634.0	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	1.14	3.69	0.0	3.37	0.47	4.82	2.11	1.77	1.25
Merged-chr7-45590007-2	chr7	45589484	45590484	+	644.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009737)	TTS (NM_009737)	-14808.0	NR_038165	71661.0	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	60.64	38.25	40.7	53.3	28.46	40.19	47.53	46.87	63.08
Merged-chr9-122950420-2	chr9	122949907	122950907	+	644.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010620)	promoter-TSS (NM_010620)	593.0	NM_025419	66202.0	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	124.71	208.27	125.79	102.56	165.61	125.39	182.72	215.78	103.05
Merged-chr16-23611176-1	chr16	23610676	23611676	+	644.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	intron (NM_023386, intron 1 of 1)	1257.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	121.85	131.78	110.99	138.99	126.89	151.92	207.01	241.42	87.43
Merged-chr6-97971584-3	chr6	97971077	97972077	+	644.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001178049, intron 2 of 9)	intron (NM_001178049, intron 2 of 9)	-20206.0	NM_008601	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	23.45	24.88	34.22	20.92	22.86	20.09	34.85	28.3	19.98
Merged-chr12-110844706-3	chr12	110844261	110845261	+	644.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_152102)	TTS (NR_152102)	3732.0	NR_152102	66709.0	Mm.390504	NR_152102		4921507G05Rik	-	RIKEN cDNA 4921507G05 gene	ncRNA	137.29	216.11	124.87	143.04	184.27	151.92	191.17	258.23	151.76
Merged-chr10-70281210-1	chr10	70280710	70281710	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025807, intron 4 of 5)	MIRb|SINE|MIR	35934.0	NM_025807	66859.0	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	7.44	10.14	5.55	12.82	6.06	13.66	9.51	4.86	4.37
Merged-chr17-36992929-1	chr17	36992429	36993429	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3425.0	NM_001115075	240095.0	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	22.31	33.64	31.45	10.8	9.33	9.65	20.07	10.61	12.49
Merged-chr16-22263011-1	chr16	22262511	22263511	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	2994.0	NM_001330554	20462.0	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	26.89	30.87	34.22	17.54	29.39	15.27	31.69	13.71	26.23
Merged-chr4-132617414-1	chr4	132616914	132617914	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21632.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	59.49	29.03	26.82	76.92	43.39	49.83	60.2	51.29	39.35
Merged-chr15-50841913-1	chr15	50841413	50842413	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 2 of 5)	intron (NM_001310481, intron 2 of 5)	47136.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	16.02	11.52	12.95	14.17	13.06	3.22	15.84	10.61	3.75
Merged-chr2-91508210-2	chr2	91507677	91508677	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172668, intron 36 of 37)	MLT1F2|LTR|ERVL-MaLR	-18585.0	NM_001165989	75786.0	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	21.74	22.58	13.87	17.54	13.53	35.37	42.25	49.52	57.46
Merged-chr1-107228041-1	chr1	107227541	107228541	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1VL4|LINE|L1	50330.0	NM_201363	381286.0	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	6.29	9.22	7.4	2.7	2.33	3.22	2.11	5.31	1.87
Merged-chr2-76255111-1	chr2	76254611	76255611	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 2 of 19)	intron (NM_001081033, intron 2 of 19)	83542.0	NM_001081033	241489.0	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	2.29	5.99	1.85	6.07	1.87	2.41	3.17	1.33	5.62
Merged-chr3-88654859-1	chr3	88654359	88655359	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1717.0	NM_181817	242093.0	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	6.29	2.76	5.55	4.72	6.06	8.04	3.17	0.88	0.62
Merged-chr2-114249332-1	chr2	114248832	114249832	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47900.0	NM_175466	228491.0	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	5.15	0.92	3.7	4.05	12.6	1.61	1.06	3.98	1.25
Merged-chr18-43393573-1	chr18	43393073	43394073	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009468)	promoter-TSS (NM_009468)	-196.0	NM_009468	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	4.0	3.69	3.7	0.67	0.47	1.61	2.11	0.88	0.0
Merged-chr15-97790235-3	chr15	97789710	97790710	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026353, intron 2 of 2)	intron (NM_026353, intron 2 of 2)	5845.0	NM_026353	67739.0	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	5.72	4.15	7.4	11.47	7.93	16.88	7.39	4.86	10.62
Merged-chr9-88548394-1	chr9	88547894	88548894	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001142943, exon 1 of 6)	5' UTR (NM_001142943, exon 1 of 6)	374.0	NM_001142943	71640.0	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik|Nczf	zinc finger protein 949	protein-coding	17.73	19.81	6.47	27.66	22.86	19.29	31.69	22.99	18.11
Merged-chr16-13117425-1	chr16	13116925	13117925	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015769, intron 2 of 10)	intron (NM_015769, intron 2 of 10)	7689.0	NM_015769	50505.0	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	3.43	5.99	2.77	2.02	2.33	4.02	1.06	1.33	2.5
Merged-chrX-102050748-1	chrX	102050248	102051248	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	20559.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	2.86	3.23	0.0	2.02	0.93	3.22	5.28	4.86	0.0
Merged-chr4-42946125-1	chr4	42945625	42946625	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3742.0	NM_001355438	56323.0	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	5.15	2.76	1.85	6.07	0.93	3.22	2.11	1.33	1.25
Merged-chr1-137927081-2	chr1	137926576	137927576	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39379.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.14	6.45	3.7	29.69	15.39	16.08	28.52	19.46	12.49
Merged-chr6-124304686-1	chr6	124304186	124305186	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053094)	promoter-TSS (NM_053094)	35.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	18.88	24.42	31.45	32.39	26.12	17.68	17.96	25.2	23.73
Merged-chr9-114723544-2	chr9	114723034	114724034	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146229, exon 13 of 13)	3' UTR (NM_146229, exon 13 of 13)	-7669.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	13.73	6.45	16.65	8.77	9.8	25.72	12.67	5.31	11.24
Merged-chr15-103484314-1	chr15	103483814	103484814	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 22 of 30)	intron (NM_153505, intron 22 of 30)	-18720.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	5.15	9.22	14.8	10.12	6.06	10.45	8.45	8.4	2.5
Merged-chr8-36745023-1	chr8	36744523	36745523	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 5 of 17)	intron (NM_001194940, intron 5 of 17)	-11969.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	6.86	6.45	0.0	10.12	4.67	3.22	6.34	1.77	9.37
Merged-chr10-80701615-1	chr10	80701115	80702115	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	205.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	65.21	57.14	62.9	64.77	44.32	44.21	60.2	50.41	54.96
Merged-chr19-16371892-1	chr19	16371392	16372392	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 5 of 6)	MLTR11A|LTR|ERVK	-56888.0	NR_105832	102465218.0		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	7.44	5.99	16.65	7.42	7.46	1.61	8.45	5.31	2.5
Merged-chr9-74425807-1	chr9	74425307	74426307	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	315473.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	1.72	3.23	0.0	4.72	3.27	4.02	2.11	0.0	8.12
Merged-chr7-67051310-1	chr7	67050810	67051810	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033877, intron 14 of 22)	intron (NM_001033877, intron 14 of 22)	171148.0	NR_131044	76628.0	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	2.29	2.76	0.0	2.02	4.2	3.22	4.22	1.33	2.5
Merged-chr8-11312675-1	chr8	11312175	11313175	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009932)	promoter-TSS (NM_009932)	-130.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.86	1.84	0.92	1.35	2.8	2.41	1.06	2.65	1.25
Merged-chr17-34285621-1	chr17	34285121	34286121	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010378, intron 1 of 4)	intron (NM_010378, intron 1 of 4)	2150.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	42.33	27.65	82.32	6.07	6.06	4.82	17.96	26.97	5.62
Merged-chr5-150375391-1	chr5	150374891	150375891	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172887, intron 14 of 60)	intron (NM_172887, intron 14 of 60)	115461.0	NM_172887	320365.0	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.0	3.23	4.62	5.4	3.27	5.63	4.22	2.65	3.75
Merged-chr16-17703883-2	chr16	17703386	17704386	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	19014.0	NM_001285886	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	49.2	59.44	28.67	72.87	79.77	49.83	74.99	63.23	25.61
Merged-chr1-184502731-1	chr1	184502231	184503231	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54960.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	8.01	3.69	5.55	3.37	2.33	4.82	3.17	3.1	6.25
Merged-chr10-122600987-1	chr10	122600487	122601487	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31096.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	8.01	3.23	1.85	3.37	0.93	5.63	5.28	8.84	3.12
Merged-chr17-35094932-1	chr17	35094432	35095432	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178592, intron 5 of 19)	MIR|SINE|MIR	5641.0	NM_178592	193742.0	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	13.16	6.45	17.57	4.72	12.6	9.65	6.34	7.52	8.12
Merged-chr18-30447757-1	chr18	30447257	30448257	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174892.0	NR_151699	225326.0	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	8.58	3.69	2.77	14.84	14.0	4.82	10.56	11.05	11.24
Merged-chr9-87022630-2	chr9	87022112	87023112	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359962, intron 1 of 14)	intron (NM_001359962, intron 1 of 14)	583.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	70.93	73.73	47.17	79.62	61.11	66.71	139.42	155.64	59.95
Merged-chr13-112926983-1	chr13	112926483	112927483	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_172594)	promoter-TSS (NM_172594)	397.0	NM_028151	72198.0	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|Mtrex|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	101.25	127.18	59.2	80.29	79.31	75.56	104.56	141.49	54.96
Merged-chr2-72474290-2	chr2	72473813	72474813	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1906.0	NM_025866	66953.0	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	2.86	5.99	9.25	6.75	6.06	3.22	7.39	3.98	7.49
Merged-chr18-80296141-1	chr18	80295641	80296641	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001190373, exon 4 of 4)	exon (NM_001190373, exon 4 of 4)	39835.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	2.86	2.76	1.85	6.07	2.8	3.22	4.22	1.77	2.5
Merged-chr2-118011052-2	chr2	118010566	118011566	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	100136.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	8.01	7.37	8.32	9.45	14.46	4.82	12.67	12.38	13.74
Merged-chr4-8648420-2	chr4	8647916	8648916	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41990.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	24.03	22.12	9.25	32.39	18.66	18.49	31.69	18.57	23.73
Merged-chrY-1253116-1	chrY	1252616	1253616	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-7357.0	NM_009484	22290.0	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	4.0	4.61	1.85	5.4	3.73	10.45	1.06	3.98	5.0
Merged-chr10-40259112-1	chr10	40258612	40259612	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001359492	67371.0	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	62.35	66.81	58.27	52.63	49.45	36.17	53.87	80.47	48.09
Merged-chr6-50109526-1	chr6	50109026	50110026	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164734)	promoter-TSS (NM_001164734)	-715.0	NM_019939	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	14.3	11.52	9.25	14.17	12.13	6.43	7.39	15.03	0.62
Merged-chr2-11547827-1	chr2	11547327	11548327	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	6102.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	24.03	19.81	9.25	14.84	11.2	13.66	15.84	11.5	8.12
Merged-chr4-19952198-1	chr4	19951698	19952698	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29632.0	NM_175406	242341.0	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.43	5.99	3.7	4.05	13.06	2.41	2.11	4.42	8.74
Merged-chr10-80142919-1	chr10	80142419	80143419	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347092, intron 1 of 2)	intron (NM_001347092, intron 1 of 2)	604.0	NM_025313	66043.0	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|Atp5f1d|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	75.51	46.54	64.75	76.92	49.92	50.64	54.92	53.06	55.58
Merged-chr11-101449126-1	chr11	101448626	101449626	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027320, intron 1 of 6)	RLTR12E|LTR|ERVK	714.0	NM_027320	70110.0	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	72.65	67.74	59.2	73.54	74.17	71.54	87.66	102.14	69.95
Merged-chr8-36867734-2	chr8	36867216	36868216	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	84726.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	19.45	24.88	20.35	22.27	20.99	16.08	46.47	56.16	35.6
Merged-chr19-16701969-1	chr19	16701469	16702469	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173028, intron 31 of 71)	intron (NM_173028, intron 31 of 71)	78964.0	NM_173028	271564.0	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	6.29	10.6	8.32	10.8	5.13	4.82	10.56	5.75	13.12
Merged-chr13-4279417-1	chr13	4278917	4279917	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013777)	promoter-TSS (NM_013777)	-18.0	NM_013777	622402.0	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	4.58	3.23	3.7	6.07	2.33	4.02	5.28	5.75	3.12
Merged-chr2-45205901-1	chr2	45205401	45206401	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88459.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	18.31	15.21	3.7	26.31	34.52	8.84	4.22	7.07	5.0
Merged-chr17-72927170-3	chr17	72926671	72927671	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029999, intron 2 of 2)	intron (NM_029999, intron 2 of 2)	8866.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	24.6	34.1	55.5	30.36	29.39	29.74	14.79	15.48	18.74
Merged-chr7-121035499-1	chr7	121034999	121035999	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	intron (NM_021554, intron 1 of 4)	1054.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	70.36	65.89	85.1	76.92	42.45	81.99	92.94	68.98	49.96
Merged-chr4-3510554-1	chr4	3510054	3511054	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-26536.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	82.38	96.3	85.1	93.11	74.64	64.3	109.84	122.92	66.82
Merged-chr8-83185572-1	chr8	83185072	83186072	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	20220.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	4.58	2.76	3.7	3.37	3.73	3.22	8.45	1.33	5.0
Merged-chr12-99447961-1	chr12	99447461	99448461	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 1 of 5)	intron (NM_183186, intron 1 of 5)	2113.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	4.58	1.84	13.87	4.05	0.47	4.02	4.22	3.54	2.5
Merged-chr1-156424045-1	chr1	156423545	156424545	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3130.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	7.44	4.15	12.95	6.75	2.8	11.25	1.06	1.77	4.37
Merged-chr9-107626931-1	chr9	107626431	107627431	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8411.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	17.73	12.9	19.42	8.1	4.2	32.96	19.01	15.48	13.12
Merged-chr4-123019085-1	chr4	123018585	123019585	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151450, intron 1 of 9)	Lx8|LINE|L1	2492.0	NR_151450	66966.0	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	25.17	19.81	25.9	10.8	6.53	16.08	11.62	14.15	11.24
Merged-chr6-71272505-2	chr6	71271980	71272980	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106192)	TTS (NR_106192)	461.0	NM_145568	57896.0	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	217.38	246.52	225.69	189.6	275.24	201.75	241.87	285.64	145.51
Merged-chr19-46459453-1	chr19	46458953	46459953	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 8 of 11)	intron (NM_001025391, intron 8 of 11)	-42195.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	6.86	2.76	0.0	5.4	3.73	4.82	3.17	0.88	3.75
Merged-chr12-54640600-1	chr12	54640100	54641100	+	644.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5412.0	NR_035439	100316682.0		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	5.72	3.69	0.0	4.72	4.2	11.25	11.62	5.75	6.25
Merged-chr15-58273140-3	chr15	58272642	58273642	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51027.0	NM_177755	268807.0	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	9.72	6.45	9.25	12.14	7.0	17.68	21.12	8.84	23.11
Merged-chr2-127341768-1	chr2	127341268	127342268	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291003, intron 1 of 8)	intron (NM_001291003, intron 1 of 8)	132.0	NM_001291003	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	12.59	2.76	0.0	4.05	1.87	1.61	1.06	0.88	3.75
Merged-chr2-27547522-1	chr2	27547022	27548022	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	32375.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	18.88	13.36	12.95	4.05	2.33	9.65	12.67	15.03	9.99
Merged-chr5-113006365-1	chr5	113005865	113006865	+	644.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	9173.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	12.59	16.13	10.17	18.89	10.73	10.45	7.39	3.98	4.37
Merged-chr9-55377860-1	chr9	55377360	55378360	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 2 of 10)	intron (NM_172923, intron 2 of 10)	50947.0	NM_001357568	244886.0	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	6.86	3.23	0.0	9.45	2.33	2.41	2.11	3.98	3.75
Merged-chr10-44752326-1	chr10	44751826	44752826	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-293578.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	3.43	3.69	5.55	2.02	7.0	4.82	3.17	1.77	1.25
Merged-chr18-39453013-1	chr18	39452513	39453513	+	644.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	34232.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	15.45	11.06	24.05	10.12	7.46	1.61	12.67	6.63	6.25
Merged-chr1-80759852-2	chr1	80759356	80760356	+	643.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1303.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	1.72	4.61	8.32	5.4	0.93	3.22	7.39	2.21	8.74
Merged-chr2-124605539-2	chr2	124605023	124606023	+	643.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4773.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	8.01	4.61	5.55	8.1	10.73	6.43	7.39	3.54	8.74
Merged-chr4-133671328-3	chr4	133670819	133671819	+	643.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356466, intron 1 of 3)	intron (NM_001356466, intron 1 of 3)	1328.0	NM_001145955	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	15.45	17.51	15.72	16.19	12.13	32.15	12.67	23.88	33.72
Merged-chr9-73116931-2	chr9	73116436	73117436	+	643.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198609, intron 3 of 5)	(T)n|Simple_repeat|Simple_repeat	3467.0	NM_198609	225215.0	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	7.44	8.29	5.55	4.72	6.53	4.82	9.51	8.4	3.12
Merged-chr4-128680645-3	chr4	128680095	128681095	+	643.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-8143.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	24.6	11.52	11.1	18.22	12.6	19.29	6.34	11.05	6.87
Merged-chr1-37867275-2	chr1	37866759	37867759	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1961.0	NM_001290720	211484.0	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	5.72	10.14	0.92	17.54	7.46	2.41	8.45	8.84	2.5
Merged-chr15-85867841-2	chr15	85867350	85868350	+	643.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013882, intron 5 of 10)	intron (NM_013882, intron 5 of 10)	7904.0	NM_013882	29870.0	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	3.43	4.61	1.85	3.37	1.87	1.61	2.11	0.88	0.0
Merged-chr15-84133712-2	chr15	84133193	84134193	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10518.0	NM_029427	75772.0	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	5.15	1.84	0.0	2.7	2.33	11.25	3.17	3.1	8.12
Merged-chr6-125433888-2	chr6	125433385	125434385	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53381.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.57	0.92	1.85	2.7	3.27	4.82	19.01	6.63	4.37
Merged-chr7-30860035-1	chr7	30859535	30860535	+	643.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_194057)	TTS (NM_194057)	1435.0	NM_194057	233081.0	Mm.425422	NM_194057	ENSMUSG00000044453	Ffar1	Gpr40	free fatty acid receptor 1	protein-coding	2.29	0.92	6.47	4.05	0.93	0.0	1.06	0.0	3.75
Merged-chr15-102459622-1	chr15	102459122	102460122	+	643.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 2 of 4)	intron (NM_025385, intron 2 of 4)	452.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	94.96	135.93	54.57	89.74	81.64	104.49	102.45	127.79	83.06
Merged-chr10-71362628-1	chr10	71362128	71363128	+	643.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	14865.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	20.59	31.33	16.65	53.3	72.31	79.58	46.47	39.8	21.86
Merged-chr7-145090252-2	chr7	145089752	145090752	+	643.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117867.0	NR_033626	100040049.0	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	8.58	5.53	3.7	13.49	11.2	11.25	25.35	16.36	11.87
Merged-chr4-124843636-1	chr4	124843136	124844136	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008636, intron 10 of 10)	intron (NM_008636, intron 10 of 10)	6928.0	NM_001347196	68920.0	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	4.0	1.84	0.0	4.05	2.8	8.84	1.06	2.21	5.0
Merged-chr15-89404675-2	chr15	89404181	89405181	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162880, intron 1 of 2)	(CAAAA)n|Simple_repeat|Simple_repeat	5582.0	NM_001162882	75459.0	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	12.59	20.27	18.5	16.19	11.66	14.47	14.79	7.52	14.99
Merged-chr7-99680909-2	chr7	99680399	99681399	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 7 of 13)	intron (NM_175316, intron 7 of 13)	14910.0	NM_001252531	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	12.59	3.23	12.95	26.99	12.6	6.43	4.22	3.54	0.0
Merged-chr19-32911484-2	chr19	32910985	32911985	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	153908.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	9.72	8.29	11.1	8.77	3.27	17.68	32.74	27.41	33.1
Merged-chr18-75218980-1	chr18	75218480	75219480	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 14 of 16)	L1MC5a|LINE|L1	78337.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	4.58	4.15	5.55	6.07	5.6	17.68	3.17	0.44	3.75
Merged-chr2-130631359-2	chr2	130630873	130631873	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_001255994	140629.0	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	9.72	9.22	11.1	14.84	7.46	7.23	4.22	3.98	3.75
Merged-chr6-146272491-1	chr6	146271991	146272991	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 37 of 56)	intron (NM_019923, intron 37 of 56)	229732.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.0	5.07	0.0	2.02	4.2	1.61	1.06	3.54	1.25
Merged-chr5-67778219-2	chr5	67777731	67778731	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284345, intron 7 of 36)	intron (NM_001284345, intron 7 of 36)	69200.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.57	7.37	1.85	4.72	2.8	12.86	3.17	5.31	8.12
Merged-chr15-83205342-2	chr15	83204855	83205855	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33147.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	1.72	1.38	5.55	5.4	0.93	5.63	4.22	0.44	3.75
Merged-chr13-114831583-1	chr13	114831083	114832083	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13346.0	NM_001113374	17434.0	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	4.58	1.84	2.77	2.7	1.4	3.22	1.06	6.19	7.49
Merged-chr9-22457555-1	chr9	22457055	22458055	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018739, intron 2 of 5)	intron (NM_018739, intron 2 of 5)	10801.0	NM_018739	55934.0	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	29.75	24.88	44.4	20.24	18.66	30.54	52.81	33.16	25.61
Merged-chr12-25294654-1	chr12	25294154	25295154	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165480.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	9.15	2.3	7.4	9.45	7.46	6.43	3.17	3.54	4.37
Merged-chr7-100780473-2	chr7	100779971	100780971	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 2 of 8)	intron (NM_178764, intron 2 of 8)	73836.0	NM_001362170	319604.0	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	11.44	6.45	9.25	10.12	6.53	7.23	3.17	1.33	3.12
Merged-chrX-75096614-1	chrX	75096114	75097114	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001359413, exon 2 of 16)	5' UTR (NM_001359413, exon 2 of 16)	760.0	NM_001359413	245474.0	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	56.06	46.08	40.7	62.75	55.05	36.97	52.81	73.4	32.48
Merged-chr5-46347564-2	chr5	46347072	46348072	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-415163.0	NR_110478	78106.0	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	3.43	2.3	3.7	2.02	0.47	1.61	2.11	4.86	3.75
Merged-chr19-38043912-2	chr19	38043399	38044399	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001099634)	promoter-TSS (NM_001099634)	-322.0	NM_001302140	226101.0	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	32.04	30.41	29.6	23.62	31.72	45.01	25.35	36.7	26.85
Merged-chr7-128705877-3	chr7	128705347	128706347	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145955, intron 11 of 15)	intron (NM_145955, intron 11 of 15)	16977.0	NM_001346517	101490.0	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	4.58	4.61	7.4	6.75	4.67	4.82	4.22	1.77	3.75
Merged-chr2-153445003-2	chr2	153444519	153445519	+	643.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001986)	promoter-TSS (NM_001001986)	-540.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	8.58	5.53	9.25	8.1	3.73	8.84	15.84	7.07	3.75
Merged-chr8-11602231-2	chr8	11601737	11602737	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32799.0	NR_030781	102334.0	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	1.72	1.84	3.7	2.7	0.47	3.22	4.22	0.88	3.75
Merged-chr7-100608438-2	chr7	100607941	100608941	+	643.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153424)	promoter-TSS (NR_153424)	-140.0	NR_003559	52443.0	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	137.86	94.46	87.87	113.35	94.23	104.49	87.66	87.11	78.69
Merged-chr12-118772975-3	chr12	118772483	118773483	+	643.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6BA|LTR|ERVK	-73346.0	NM_177082	320145.0	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.29	4.15	5.55	4.05	7.0	3.22	1.06	3.1	2.5
Merged-chr1-149833143-3	chr1	149832649	149833649	+	643.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 17 of 17)	intron (NM_008869, intron 17 of 17)	89290.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	12.01	8.29	9.25	12.14	7.46	6.43	9.51	8.84	4.37
Merged-chr4-145295812-2	chr4	145295304	145296304	+	643.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009401, intron 4 of 12)	intron (NM_009401, intron 4 of 12)	19343.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	4.58	5.53	0.0	6.75	1.4	0.0	5.28	0.44	2.5
Merged-chr1-172412455-2	chr1	172411947	172412947	+	643.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35916.0	NM_026234	67556.0	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	6.29	1.84	3.7	3.37	1.87	0.0	2.11	3.1	1.25
Merged-chr14-13354347-2	chr14	13353848	13354848	+	643.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028052, intron 2 of 5)	intron (NM_028052, intron 2 of 5)	69568.0	NM_028052	72003.0	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	3.43	3.69	0.0	4.72	3.73	4.02	1.06	2.21	1.25
Merged-chr11-70289480-2	chr11	70288975	70289975	+	643.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33055.0	NM_145684	11685.0	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	12-LOX|8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	8.01	3.69	9.25	10.8	2.8	9.65	13.73	4.42	2.5
Merged-chr16-10522976-1	chr16	10522476	10523476	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007575, intron 15 of 18)	B3|SINE|B2	20078.0	NM_021428	58239.0	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	6.29	0.92	12.95	4.05	0.47	1.61	3.17	0.88	4.37
Merged-chr6-6005001-1	chr6	6004501	6005501	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010063, intron 14 of 16)	intron (NM_010063, intron 14 of 16)	-27608.0	NR_040255	72249.0	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	6.29	11.52	14.8	22.94	16.33	11.25	9.51	6.63	11.24
Merged-chr17-74853860-1	chr17	74853360	74854360	+	643.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152817, intron 16 of 19)	intron (NM_152817, intron 16 of 19)	136110.0	NM_152817	74196.0	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	6.29	5.07	2.77	8.1	7.0	2.41	7.39	8.4	3.12
Merged-chr1-65195700-1	chr1	65195200	65196200	+	643.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011086, exon 5 of 42)	exon (NM_011086, exon 5 of 42)	9015.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	10.87	12.9	8.32	12.14	7.93	8.84	17.96	14.15	13.12
Merged-chr18-34866133-1	chr18	34865633	34866633	+	643.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4926.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	5.15	0.46	1.85	6.75	0.0	1.61	1.06	0.44	3.75
Merged-chr6-84026372-3	chr6	84025858	84026858	+	643.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310152, intron 1 of 53)	MTEb|LTR|ERVL-MaLR	6972.0	NM_021469	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	35.47	30.87	32.37	34.41	33.12	32.96	34.85	27.86	14.99
Merged-chr19-61224008-2	chr19	61223511	61224511	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009970)	TTS (NM_009970)	4407.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	5.72	5.07	7.4	1.35	1.4	1.61	4.22	5.31	3.75
Merged-chr11-89008999-2	chr11	89008414	89009414	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009546, intron 2 of 8)	intron (NM_009546, intron 2 of 8)	9511.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	11.44	7.37	3.7	4.72	4.67	22.51	13.73	8.4	19.98
Merged-chr2-181241106-2	chr2	181240614	181241614	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183162, intron 1 of 18)	intron (NM_183162, intron 1 of 18)	913.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	55.49	32.72	32.37	69.5	39.19	61.09	178.5	164.93	131.78
Merged-chr3-79286246-2	chr3	79285746	79286746	+	643.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59130.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	57.78	56.22	62.9	39.81	48.52	19.29	46.47	38.03	26.23
Merged-chr19-53648913-3	chr19	53648408	53649408	+	643.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28398.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	4.58	0.46	7.4	2.7	0.47	1.61	2.11	2.65	2.5
Merged-chr1-53909294-3	chr1	53908767	53909767	+	643.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001883, intron 13 of 28)	intron (NM_001001883, intron 13 of 28)	59843.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.0	4.61	1.85	2.7	0.93	4.82	4.22	4.86	0.0
Merged-chr13-70038483-1	chr13	70037983	70038983	+	643.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-10135.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.0	1.38	0.0	1.35	0.47	0.0	17.96	12.82	9.99
Merged-chr10-41839092-2	chr10	41838609	41839609	+	643.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	28535.0	NM_001162908	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	13.73	7.83	9.25	14.84	10.26	6.43	11.62	4.42	3.75
Merged-chr11-76622790-2	chr11	76622285	76623285	+	643.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-45046.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	102.4	82.94	100.82	111.33	143.22	88.42	119.35	123.81	81.81
Merged-chr6-39068832-3	chr6	39068341	39069341	+	643.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	-1255.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	16.02	17.05	25.9	13.49	8.86	6.43	8.45	10.17	9.99
Merged-chr5-140755684-1	chr5	140755184	140756184	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	31557.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.72	4.61	5.55	5.4	4.67	7.23	2.11	2.21	5.0
Merged-chr7-135641962-1	chr7	135641462	135642462	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316679, intron 1 of 19)	intron (NM_001316679, intron 1 of 19)	-9937.0	NM_001316681	19267.0	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	5.15	2.3	8.32	2.02	1.87	0.0	0.0	1.33	2.5
Merged-chr13-113608467-1	chr13	113607967	113608967	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10097.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	27.46	23.04	8.32	16.19	7.46	12.86	12.67	8.4	16.24
Merged-chr18-39461778-1	chr18	39461278	39462278	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	25467.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	32.04	48.84	12.95	47.23	34.06	16.88	58.09	55.27	32.48
Merged-chr6-89340858-1	chr6	89340358	89341358	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008881, intron 8 of 31)	intron (NM_008881, intron 8 of 31)	21755.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	16.59	7.83	9.25	6.75	8.4	6.43	16.9	9.73	9.37
Merged-chr2-170329310-1	chr2	170328810	170329810	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-27051.0	NR_040610	73303.0	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	151.02	88.93	112.84	132.92	59.71	90.02	134.14	91.97	91.81
Merged-chr7-99500407-1	chr7	99499907	99500907	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16698.0	NM_012052	27050.0	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	9.72	1.84	0.0	2.02	2.33	4.82	1.06	0.88	6.25
Merged-chr9-66909429-1	chr9	66908929	66909929	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	10276.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	42.9	47.0	25.9	48.58	40.59	34.56	33.8	26.97	26.23
Merged-chr3-22190694-1	chr3	22190194	22191194	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 5 of 15)	intron (NM_030732, intron 5 of 15)	-60676.0	NR_004439	19784.0		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	3.43	1.84	2.77	1.35	1.4	1.61	2.11	2.21	1.87
Merged-chr11-32268134-1	chr11	32267634	32268634	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_104306)	promoter-TSS (NR_104306)	-427.0	NM_001284359	17168.0	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	45.19	35.94	35.15	47.9	27.52	33.76	40.14	32.72	28.1
Merged-chr9-110624616-1	chr9	110624116	110625116	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-223.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	8.01	4.61	1.85	8.77	5.6	11.25	5.28	2.65	8.74
Merged-chr4-150515699-1	chr4	150515199	150516199	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 10 of 22)	intron (NM_001085492, intron 10 of 22)	136475.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	6.29	2.3	3.7	7.42	7.93	1.61	10.56	14.15	5.62
Merged-chr2-49745175-1	chr2	49744675	49745675	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008449, intron 21 of 25)	intron (NM_008449, intron 21 of 25)	-42511.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	63.5	72.34	57.35	49.93	52.72	40.99	68.65	80.47	34.35
Merged-chr3-116133521-1	chr3	116133021	116134021	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3833.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	4.58	7.37	0.92	4.05	3.73	4.02	10.56	3.54	3.75
Merged-chr8-111545580-1	chr8	111545080	111546080	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168623, intron 1 of 4)	intron (NM_001168623, intron 1 of 4)	7237.0	NM_001168623	170737.0	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	8.58	6.91	1.85	27.66	13.53	17.68	13.73	3.1	8.12
Merged-chr9-108564423-1	chr9	108563923	108564923	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011830, intron 9 of 13)	intron (NM_011830, intron 9 of 13)	2919.0	NM_023247	66706.0	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	4.58	1.84	9.25	6.07	0.93	4.02	3.17	3.1	2.5
Merged-chr17-87110296-1	chr17	87109796	87110796	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019654, intron 1 of 2)	intron (NM_019654, intron 1 of 2)	2617.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	18.31	40.55	23.12	15.52	23.33	22.51	20.07	11.5	13.12
Merged-chr2-128241094-1	chr2	128240594	128241594	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	113519.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	3.43	2.3	9.25	12.82	11.66	11.25	2.11	4.86	6.25
Merged-chr2-167842568-3	chr2	167842057	167843057	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-89770.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	10.3	7.37	3.7	16.19	4.2	7.23	12.67	6.63	14.99
Merged-chr17-10312183-1	chr17	10311683	10312683	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	7178.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	13.73	13.82	6.47	12.14	15.86	25.72	29.57	16.36	10.62
Merged-chr6-128145999-1	chr6	128145499	128146499	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2421.0	NM_001356301	109246.0	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597|Tspan-9	tetraspanin 9	protein-coding	2.29	1.84	5.55	6.07	1.87	1.61	3.17	0.44	1.25
Merged-chr14-55900249-2	chr14	55899745	55900745	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001082975)	promoter-TSS (NM_001082975)	-13.0	NM_001082975	654795.0	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	1.14	2.3	9.25	7.42	1.87	0.8	2.11	5.31	0.0
Merged-chr17-34313005-1	chr17	34312505	34313505	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 2 of 5)	MTC|LTR|ERVL-MaLR	7138.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	88.1	62.67	42.55	26.31	10.26	16.08	67.6	50.85	29.98
Merged-chr12-76586128-1	chr12	76585628	76586628	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013675, intron 33 of 35)	intron (NM_013675, intron 33 of 35)	-38203.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	3.43	2.3	9.25	0.67	2.8	3.22	1.06	3.1	3.75
Merged-chr19-28337662-1	chr19	28337162	28338162	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 6 of 10)	intron (NM_175459, intron 6 of 10)	-326496.0	NM_001166414	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	1.14	2.76	5.55	4.72	3.27	7.23	4.22	4.86	1.25
Merged-chr2-61454577-1	chr2	61454077	61455077	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-124009.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	5.72	1.84	1.85	0.67	3.27	1.61	3.17	2.21	1.25
Merged-chr6-98232943-1	chr6	98232443	98233443	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	109811.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	6.29	3.69	0.0	2.7	1.4	1.61	1.06	3.1	1.87
Merged-chr10-51492793-1	chr10	51492293	51493293	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291894, intron 4 of 8)	intron (NM_001291894, intron 4 of 8)	1895.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	52.63	75.57	37.92	60.05	84.44	60.28	67.6	93.74	30.6
Merged-chr1-191186589-1	chr1	191186089	191187089	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3256.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	38.9	24.88	18.5	29.69	22.39	14.47	28.52	16.36	17.49
Merged-chr15-96736849-1	chr15	96736349	96737349	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37121.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	10.87	6.91	1.85	7.42	5.13	1.61	4.22	13.27	9.37
Merged-chrX-133936780-1	chrX	133936280	133937280	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001290718, exon 14 of 14)	3' UTR (NM_001290718, exon 14 of 14)	28355.0	NM_001083895	68792.0	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	4.0	2.76	0.92	1.35	0.0	1.61	2.11	0.44	1.25
Merged-chr7-101615731-1	chr7	101615231	101616231	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34570.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	38.33	41.93	24.05	37.11	30.79	61.89	86.61	101.7	38.1
Merged-chr6-137724059-2	chr6	137723567	137724567	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11015.0	NM_011499	20901.0	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	1.14	5.07	2.77	3.37	1.87	1.61	2.11	0.44	3.75
Merged-chr6-24961504-1	chr6	24961004	24962004	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-5379.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	13.73	10.14	12.02	11.47	4.2	4.82	8.45	4.42	3.75
Merged-chr2-32581628-1	chr2	32581128	32582128	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198191, intron 9 of 9)	intron (NM_198191, intron 9 of 9)	-5450.0	NM_001276425	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	1.14	2.76	1.85	8.1	4.2	6.43	3.17	3.54	9.99
Merged-chr1-45819599-1	chr1	45819099	45820099	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028599, exon 17 of 21)	exon (NM_028599, exon 17 of 21)	24433.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	38.33	76.03	23.12	47.9	41.52	31.35	40.14	17.69	12.49
Merged-chr17-36915218-1	chr17	36914718	36915718	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8574.0	NR_045439	73286.0	Mm.426884	NR_045439	ENSMUSG00000092239	1700031A10Rik	-	RIKEN cDNA 1700031A10 gene	ncRNA	4.58	3.23	2.77	2.02	0.93	1.61	1.06	0.0	2.5
Merged-chr8-128552144-1	chr8	128551644	128552644	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133510.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	28.6	24.42	27.75	18.89	18.19	11.25	3.17	2.65	3.75
Merged-chr13-37721635-1	chr13	37721135	37722135	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104403.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.15	6.91	7.4	9.45	3.27	11.25	11.62	13.27	0.0
Merged-chr1-144343462-1	chr1	144342962	144343962	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94358.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.72	7.37	2.77	8.1	7.0	7.23	1.06	5.31	7.49
Merged-chr11-20331615-2	chr11	20331102	20332102	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018861, intron 1 of 7)	intron (NM_018861, intron 1 of 7)	1111.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	6.29	6.91	5.55	8.1	5.13	6.43	9.51	5.31	8.74
Merged-chr13-58568843-1	chr13	58568343	58569343	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022317, intron 11 of 17)	intron (NM_022317, intron 11 of 17)	42034.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	2.86	2.76	2.77	3.37	1.87	1.61	2.11	2.21	1.25
Merged-chr7-46882180-2	chr7	46881677	46882677	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20914.0	NM_013580	16833.0	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	2.86	6.45	5.55	5.4	7.0	11.25	10.56	3.54	9.99
Merged-chr2-165062662-1	chr2	165062162	165063162	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_170704, exon 3 of 9)	exon (NM_170704, exon 3 of 9)	7026.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	9.72	14.75	3.7	10.8	4.2	5.63	35.91	19.46	7.49
Merged-chr1-4768518-3	chr1	4768019	4769019	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17207.0	NM_001177658	27395.0	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	2.86	3.69	1.85	1.35	3.27	6.43	4.22	2.65	2.5
Merged-chr12-83582239-1	chr12	83581739	83582739	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359167, intron 3 of 12)	intron (NM_001359167, intron 3 of 12)	14983.0	NM_001359167	217695.0	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	15.45	8.29	1.85	14.17	3.27	8.04	8.45	7.07	5.0
Merged-chr15-101113945-2	chr15	101113420	101114420	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1835.0	NM_144790	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	53.2	48.38	59.2	62.07	40.59	53.85	85.55	74.73	30.6
Merged-chr8-71469695-2	chr8	71469195	71470195	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001294259, intron 1 of 3)	CpG	501.0	NR_122114	66498.0	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	180.2	112.43	133.19	153.16	86.77	82.79	122.52	106.56	63.08
Merged-chr13-110062920-1	chr13	110062420	110063420	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360099, intron 4 of 4)	intron (NM_001360099, intron 4 of 4)	159111.0	NR_035442	100316683.0		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	2.86	2.76	1.85	0.67	2.33	1.61	1.06	5.75	1.25
Merged-chr2-163858698-1	chr2	163858198	163859198	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001030292, exon 2 of 2)	exon (NM_001030292, exon 2 of 2)	4948.0	NM_001030292	241769.0	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	3.43	3.23	2.77	4.72	1.4	0.0	0.0	0.44	1.87
Merged-chr1-180919867-1	chr1	180919367	180920367	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15155.0	NM_010094	13590.0	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.57	2.76	1.85	0.0	0.93	2.41	1.06	0.88	2.5
Merged-chr15-99688997-1	chr15	99688497	99689497	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009597, intron 3 of 11)	intron (NM_009597, intron 3 of 11)	-3227.0	NM_001289791	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	10.3	1.84	6.47	0.0	1.4	1.61	0.0	0.44	2.5
Merged-chr11-95426699-1	chr11	95426199	95427199	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359107, intron 1 of 9)	B4A|SINE|B4	12616.0	NM_001359107	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	6.86	7.37	2.77	12.82	10.26	25.72	23.24	13.71	18.11
Merged-chr7-64140567-2	chr7	64140076	64141076	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-13259.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	18.31	25.34	7.4	13.49	22.39	18.49	13.73	26.53	20.61
Merged-chr5-9187925-1	chr5	9187425	9188425	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-26149.0	NR_152861	23857.0	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	6.86	4.15	18.5	7.42	3.27	6.43	11.62	9.73	2.5
Merged-chr2-130476889-1	chr2	130476389	130477389	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355161, intron 1 of 21)	RMER10A|LTR|ERVL	26611.0	NM_001355161	19262.0	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	5.15	5.99	7.4	22.94	24.72	20.09	10.56	5.75	4.37
Merged-chr2-145825854-1	chr2	145825354	145826354	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 4 of 12)	ID_B1|SINE|B4	39738.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	139.01	157.13	104.52	180.82	115.23	158.35	145.75	196.76	108.04
Merged-chr13-107023013-1	chr13	107022513	107023513	+	643.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145779)	promoter-TSS (NM_001145779)	443.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	30.32	38.71	27.75	41.83	48.05	48.23	40.14	40.24	36.85
Merged-chr13-43266540-2	chr13	43266028	43267028	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033399, intron 1 of 1)	L1_Mur3|LINE|L1	37644.0	NM_001033399	328232.0	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	4.58	3.23	1.85	3.37	3.27	8.84	0.0	1.77	8.74
Merged-chr7-25765892-1	chr7	25765392	25766392	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 14 of 19)	intron (NM_009465, intron 14 of 19)	-11133.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	29.17	29.49	36.07	26.31	24.72	46.62	25.35	29.18	28.1
Merged-chr9-21412393-1	chr9	21411893	21412893	+	643.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_045742)	promoter-TSS (NR_045742)	556.0	NM_021888	60507.0	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase catalytic subunit 1	protein-coding	16.02	18.43	12.02	24.96	27.06	38.58	28.52	21.67	12.49
Merged-chr1-16220465-1	chr1	16219965	16220965	+	643.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1G1|LTR|ERVL-MaLR	114583.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.0	3.23	1.85	10.12	6.53	3.22	1.06	3.1	13.74
Merged-chr9-13575124-3	chr9	13574595	13575595	+	642.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-44894.0	NM_001013813	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	25.17	28.11	37.92	26.31	19.59	29.74	27.46	10.61	30.6
Merged-chr6-13665875-2	chr6	13665388	13666388	+	642.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	12078.0	NM_175312	101148.0	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	9.72	15.67	14.8	19.57	12.13	12.86	10.56	12.82	19.98
Merged-chr19-32770091-2	chr19	32769593	32770593	+	642.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	intron (NM_008960, intron 1 of 8)	12516.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	16.02	29.49	16.65	24.96	27.06	27.33	35.91	28.74	14.99
Merged-chr11-44355076-2	chr11	44354592	44355592	+	642.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44971.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	10.87	11.06	17.57	8.77	8.4	6.43	10.56	16.8	8.74
Merged-chr12-111693400-2	chr12	111692907	111693907	+	642.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15302.0	NM_177374	328162.0	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	4.0	0.92	3.7	42.51	46.18	53.05	53.87	72.52	20.61
Merged-chr11-116078339-2	chr11	116077816	116078816	+	642.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001009573)	promoter-TSS (NM_001009573)	-355.0	NM_001009573	70450.0	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	77.8	66.81	74.0	69.5	70.44	82.79	66.54	76.05	31.23
Merged-chr4-116656237-2	chr4	116655723	116656723	+	642.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-4549.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	183.06	191.23	128.57	152.49	145.08	127.0	182.72	218.87	112.42
Merged-chr12-40257425-3	chr12	40256937	40257937	+	642.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	34073.0	NR_045157	629820.0	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	2.29	2.76	6.47	8.77	9.33	1.61	0.0	1.77	6.25
Merged-chr6-122742661-1	chr6	122742161	122743161	+	642.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011401)	promoter-TSS (NM_011401)	84.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	1.72	4.15	0.0	8.77	9.33	4.02	8.45	3.54	1.25
Merged-chr8-67950946-2	chr8	67950456	67951456	+	642.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	23618.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	13.16	25.34	30.52	21.59	27.52	35.37	25.35	17.69	13.74
Merged-chr7-122135263-2	chr7	122134766	122135766	+	642.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021608, intron 3 of 5)	intron (NM_021608, intron 3 of 5)	2225.0	NM_021608	59288.0	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	10.87	12.9	1.85	6.75	8.86	20.09	12.67	6.19	9.99
Merged-chr9-65303784-1	chr9	65303284	65304284	+	642.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001044389, intron 3 of 12)	MTEb|LTR|ERVL-MaLR	9524.0	NM_001044389	270166.0	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	20.02	14.75	20.35	15.52	13.06	11.25	9.51	7.96	8.12
Merged-chr9-118858747-1	chr9	118858247	118859247	+	642.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-67789.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	14.3	12.44	16.65	22.94	14.46	22.51	15.84	10.17	13.74
Merged-chr15-100612073-3	chr15	100611554	100612554	+	642.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3056.0	NR_045701	78445.0	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	13.16	12.44	14.8	40.48	21.46	4.02	11.62	10.17	12.49
Merged-chr9-120012971-2	chr9	120012479	120013479	+	642.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011724)	TTS (NM_011724)	10619.0	NM_011724	22437.0	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	2.86	1.84	5.55	3.37	0.47	4.82	7.39	3.54	8.74
Merged-chr10-20003241-3	chr10	20002731	20003731	+	642.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008580, intron 2 of 29)	intron (NM_008580, intron 2 of 29)	68705.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	35.47	32.72	27.75	31.71	21.93	32.15	45.42	33.16	25.61
Merged-chr3-67564885-2	chr3	67564373	67565373	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17895.0	NM_025813	66868.0	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	2.86	2.76	3.7	2.7	3.27	0.0	3.17	3.1	2.5
Merged-chr11-74664501-1	chr11	74664001	74665001	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 13 of 25)	intron (NM_001081158, intron 13 of 25)	15006.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	7.44	7.83	14.8	12.14	4.67	3.22	13.73	2.21	5.0
Merged-chr8-125640331-3	chr8	125639843	125640843	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-29475.0	NM_028908	74393.0	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	17.16	11.06	18.5	11.47	7.0	24.11	20.07	11.94	6.25
Merged-chr7-19770549-1	chr7	19770049	19771049	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_020486)	promoter-TSS (NM_020486)	-17.0	NM_020486	57278.0	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	12.01	1.84	0.0	3.37	0.47	3.22	1.06	0.44	3.75
Merged-chr6-54866931-2	chr6	54866433	54867433	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199143, intron 2 of 4)	intron (NM_199143, intron 2 of 4)	50017.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	14.3	16.13	16.65	22.27	26.12	12.86	22.18	5.75	7.49
Merged-chr4-135294064-2	chr4	135293563	135294563	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21303.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	6.86	5.99	3.7	5.4	3.73	2.41	5.28	2.21	1.25
Merged-chr13-99263462-2	chr13	99262961	99263961	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	78638.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.86	5.99	6.47	6.07	3.27	1.61	6.34	6.63	5.0
Merged-chr9-23601723-1	chr9	23601223	23602223	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	378647.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	8.01	10.6	7.4	14.17	9.33	8.84	7.39	13.71	11.24
Merged-chr6-106793747-3	chr6	106793269	106794269	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021449, intron 4 of 10)	intron (NM_021449, intron 4 of 10)	6318.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	120.13	141.92	73.07	100.53	119.89	77.16	157.37	182.17	73.07
Merged-chr4-132947002-1	chr4	132946502	132947502	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24451.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	216.24	165.88	139.67	151.14	122.69	150.31	155.26	156.09	109.29
Merged-chr1-84238143-1	chr1	84237643	84238643	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001003948, intron 1 of 2)	(CAGAGA)n|Simple_repeat|Simple_repeat	-19182.0	NR_105771	102465181.0		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	13.16	10.6	24.05	16.19	8.4	6.43	13.73	14.59	9.99
Merged-chr1-138993702-1	chr1	138993202	138994202	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	16045.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	13.16	16.13	15.72	20.92	16.33	20.9	17.96	19.46	5.62
Merged-chr18-66461179-2	chr18	66460649	66461649	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021451, intron 2 of 2)	intron (NM_021451, intron 2 of 2)	2545.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.86	9.22	9.25	6.75	6.53	10.45	10.56	7.07	3.75
Merged-chr7-28151929-2	chr7	28151428	28152428	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164655, intron 10 of 19)	intron (NM_001164655, intron 10 of 19)	-17820.0	NM_007991	14113.0	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	4.58	1.38	5.55	3.37	1.87	1.61	1.06	0.0	0.0
Merged-chr2-84653548-2	chr2	84653043	84654043	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355064, intron 1 of 18)	B2_Mm2|SINE|B2	-2803.0	NM_001355066	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	4.58	5.99	14.8	5.4	2.33	11.25	11.62	12.38	8.74
Merged-chr9-21431195-2	chr9	21430692	21431692	+	642.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357721, intron 1 of 19)	(TC)n|Simple_repeat|Simple_repeat	6284.0	NM_001357719	13430.0	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	16.02	5.99	11.1	6.07	5.6	8.04	9.51	5.75	16.86
Merged-chr14-43984065-2	chr14	43983563	43984563	+	642.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22355.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	7.44	2.3	0.0	2.02	4.2	0.0	0.0	3.54	1.25
Merged-chr1-153532401-3	chr1	153531900	153532900	+	642.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028749, intron 4 of 11)	intron (NM_028749, intron 4 of 11)	17314.0	NM_028749	74091.0	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	26.89	20.74	22.2	25.64	16.33	36.17	27.46	11.94	16.24
Merged-chr5-117136006-2	chr5	117135506	117136506	+	642.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	2418.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	22.88	16.59	16.65	17.54	18.66	22.51	21.12	9.29	12.49
Merged-chr6-33539707-2	chr6	33539221	33540221	+	642.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	290593.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	21.17	27.19	25.9	23.62	23.79	32.96	39.08	38.47	16.86
Merged-chr7-142057009-3	chr7	142056514	142057514	+	642.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	3839.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	9.15	8.29	11.1	8.1	8.4	15.27	8.45	9.29	3.75
Merged-chr1-60668482-1	chr1	60667982	60668982	+	642.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77906.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	19.45	15.21	22.2	37.11	36.85	40.99	19.01	23.43	18.74
Merged-chr6-87876378-1	chr6	87875878	87876878	+	642.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11562.0	NM_017477	54161.0	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	13.73	11.98	9.25	17.54	10.73	17.68	8.45	3.54	8.74
Merged-chr7-66250255-3	chr7	66249756	66250756	+	642.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	131468.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	4.0	1.38	3.7	2.02	1.4	0.0	2.11	5.75	1.25
Merged-chr10-96279260-1	chr10	96278760	96279760	+	642.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53053.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	9.72	9.22	4.62	5.4	4.67	0.8	3.17	4.42	4.37
Merged-chr3-96575699-3	chr3	96575208	96576208	+	642.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8907.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	59.49	46.54	24.05	79.62	39.19	45.82	44.36	34.49	21.86
Merged-chr7-109486487-2	chr7	109485972	109486972	+	642.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181853, intron 1 of 19)	intron (NM_181853, intron 1 of 19)	7266.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	10.3	10.6	14.8	4.05	4.67	6.43	6.34	8.4	12.49
Merged-chr11-3914736-3	chr11	3914237	3915237	+	642.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153142)	promoter-TSS (NM_153142)	-73.0	NM_153142	103710.0	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	13.16	14.28	12.02	12.14	14.93	44.21	11.62	10.61	9.99
Merged-chr2-156439873-1	chr2	156439373	156440373	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291120, intron 2 of 22)	intron (NM_001291120, intron 2 of 22)	18964.0	NM_001291123	13821.0	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	6.86	3.69	7.4	10.8	1.87	5.63	13.73	6.19	5.0
Merged-chr14-120288650-1	chr14	120288150	120289150	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360380, intron 1 of 7)	intron (NM_001360380, intron 1 of 7)	12981.0	NM_001360380	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	4.0	4.61	5.55	7.42	5.13	3.22	7.39	2.65	1.87
Merged-chr7-3506100-2	chr7	3505581	3506581	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3457.0	NM_177363	245126.0	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	2.29	2.76	0.0	2.02	4.2	4.82	6.34	4.42	6.87
Merged-chr5-122731523-1	chr5	122731023	122732023	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145358, exon 16 of 16)	3' UTR (NM_145358, exon 16 of 16)	23979.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	24.6	12.44	10.17	43.86	32.19	16.88	23.24	11.94	13.12
Merged-chr5-134541096-1	chr5	134540596	134541596	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039162, intron 1 of 15)	intron (NM_001039162, intron 1 of 15)	11338.0	NM_001039162	269713.0	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	19.45	10.6	5.55	8.77	1.87	1.61	14.79	5.75	8.74
Merged-chr3-65956039-1	chr3	65955539	65956539	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355433, intron 3 of 11)	intron (NM_001355433, intron 3 of 11)	2210.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	40.62	69.58	55.5	41.83	39.65	32.96	55.98	69.86	39.35
Merged-chr11-114792065-1	chr11	114791565	114792565	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028055, exon 3 of 3)	exon (NM_028055, exon 3 of 3)	3827.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	11.44	4.15	7.4	6.07	3.73	3.22	4.22	3.54	1.25
Merged-chr12-73517374-1	chr12	73516874	73517874	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29021.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	1.72	1.84	0.0	3.37	0.93	1.61	4.22	0.44	1.25
Merged-chr2-112449774-1	chr2	112449274	112450274	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5251.0	NM_133749	73024.0	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	6.29	5.99	9.25	7.42	4.67	8.04	3.17	3.1	3.75
Merged-chr7-106954029-1	chr7	106953529	106954529	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2905.0	NM_206897	233670.0	Mm.296765	NM_206897	ENSMUSG00000036647	Olfr6	M50|MOR103-16	olfactory receptor 6	protein-coding	1.72	2.76	0.0	3.37	1.87	3.22	1.06	2.65	3.75
Merged-chr10-50609680-1	chr10	50609180	50610180	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 3 of 41)	intron (NM_198007, intron 3 of 41)	17011.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.0	8.29	3.7	4.05	8.4	11.25	8.45	12.82	8.74
Merged-chr11-6174961-1	chr11	6174461	6175461	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	-1630.0	NR_029471	100042173.0	Mm.441799	NR_029471		Rps15a-ps6	Gm11968	ribosomal protein S15A, pseudogene 6	pseudo	11.44	5.07	7.4	10.12	3.73	1.61	1.06	5.75	7.49
Merged-chr14-48465146-1	chr14	48464646	48465646	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310584, intron 4 of 16)	intron (NM_001310584, intron 4 of 16)	18794.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	16.02	11.52	37.92	16.87	7.93	20.9	7.39	3.98	14.99
Merged-chr6-87037956-1	chr6	87037456	87038456	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4890.0	NM_013528	14583.0	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	20.59	14.75	19.42	21.59	6.53	11.25	30.63	28.3	16.24
Merged-chrX-169982153-1	chrX	169981653	169982653	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010797, intron 5 of 9)	intron (NM_010797, intron 5 of 9)	-3236.0	NR_029457	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	0.0	0.0	0.0	17.96	27.41	13.12
Merged-chr12-95745665-1	chr12	95745165	95746165	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	53439.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	49.2	53.45	36.07	47.9	55.98	40.19	60.2	52.18	38.72
Merged-chr15-87108390-2	chr15	87107883	87108883	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-435916.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	4.0	4.15	0.0	5.4	5.13	8.84	4.22	7.52	8.74
Merged-chr10-115351157-1	chr10	115350657	115351657	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359472, intron 3 of 6)	intron (NM_001359472, intron 3 of 6)	11092.0	NM_001359470	67226.0	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	5.72	4.15	1.85	0.67	3.27	5.63	6.34	8.84	5.0
Merged-chr7-120834554-1	chr7	120834054	120835054	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8277.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	25.74	28.57	34.22	22.27	26.59	20.09	46.47	44.66	26.85
Merged-chr9-109003392-1	chr9	109002892	109003892	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153430, intron 3 of 13)	B3|SINE|B2	11490.0	NR_153430	270198.0	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	5.15	3.69	1.85	4.05	0.93	0.0	10.56	0.88	1.87
Merged-chr14-63147272-1	chr14	63146772	63147772	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360211, intron 7 of 7)	intron (NM_001360211, intron 7 of 7)	24810.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	4.0	6.45	7.4	5.4	9.8	15.27	7.39	2.21	13.12
Merged-chr3-57663948-1	chr3	57663448	57664448	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12264.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	3.43	4.15	4.62	2.02	2.33	4.82	4.22	1.77	3.75
Merged-chr14-20508597-1	chr14	20508097	20509097	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008914, intron 12 of 13)	intron (NM_008914, intron 12 of 13)	-11696.0	NM_029104	74843.0	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	5.15	5.99	0.92	6.75	10.73	4.82	6.34	3.54	0.0
Merged-chr1-16122346-1	chr1	16121846	16122846	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 2 of 5)	intron (NM_133832, intron 2 of 5)	16464.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	4.0	5.99	5.55	10.12	1.87	8.04	6.34	5.75	5.0
Merged-chr10-105572945-2	chr10	105572450	105573450	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	1529.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.0	0.46	0.92	2.7	1.4	4.82	2.11	3.1	3.75
Merged-chr4-53104651-1	chr4	53104151	53105151	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 7 of 49)	intron (NM_013454, intron 7 of 49)	55244.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	7.44	4.61	17.57	21.59	11.66	8.84	7.39	10.17	7.49
Merged-chr18-12218688-1	chr18	12218188	12219188	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008720, intron 4 of 24)	B3|SINE|B2	17698.0	NM_008720	18145.0	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	NPC intracellular cholesterol transporter 1	protein-coding	5.15	2.76	0.0	5.4	2.33	6.43	3.17	1.33	3.75
Merged-chr5-88500668-1	chr5	88500168	88501168	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017468, intron 9 of 9)	intron (NM_017468, intron 9 of 9)	12693.0	NM_017468	13801.0	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	9.15	7.83	5.55	6.75	5.13	3.22	6.34	7.96	8.12
Merged-chr1-88424811-1	chr1	88424311	88425311	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029269, intron 7 of 7)	intron (NM_029269, intron 7 of 7)	17801.0	NM_029269	75396.0	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	2.86	3.69	7.4	0.67	3.73	0.0	4.22	4.42	7.49
Merged-chr4-130899047-1	chr4	130898547	130899547	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14287.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	21.17	14.28	6.47	12.14	13.06	8.04	12.67	13.27	21.23
Merged-chr9-78596993-1	chr9	78596493	78597493	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8948.0	NM_001276452	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	5.15	5.07	1.85	3.37	4.2	4.82	2.11	2.65	0.0
Merged-chr7-96870655-1	chr7	96870155	96871155	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 26 of 32)	MIRc|SINE|MIR	-69106.0	NR_045874	791381.0	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	3.43	4.15	5.55	8.77	7.0	2.41	2.11	1.33	2.5
Merged-chr2-84530750-1	chr2	84530250	84531250	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-23877.0	NR_046046	672763.0	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	78.37	76.49	88.8	70.17	48.98	49.03	60.2	87.11	34.35
Merged-chr4-108691669-1	chr4	108691169	108692169	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183300, exon 4 of 16)	exon (NM_183300, exon 4 of 16)	32243.0	NM_183300	230597.0	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	6.29	5.53	5.55	6.07	4.2	6.43	5.28	0.88	1.25
Merged-chr2-35093784-1	chr2	35093284	35094284	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178885, intron 3 of 9)	intron (NM_178885, intron 3 of 9)	6901.0	NM_001243102	98870.0	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.57	3.23	0.0	8.77	2.33	1.61	3.17	2.65	5.0
Merged-chr13-44404411-1	chr13	44403911	44404911	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35316.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	22.31	28.11	24.05	16.19	29.39	24.11	50.7	45.1	38.72
Merged-chr19-10689975-1	chr19	10689475	10690475	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	intron (NM_001361958, intron 1 of 4)	1240.0	NM_001361959	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	310.63	315.64	190.54	134.94	124.09	129.41	129.91	128.67	70.57
Merged-chr6-90483551-1	chr6	90483051	90484051	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20975.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	2.86	2.76	5.55	6.75	5.6	3.22	5.28	2.21	7.49
Merged-chr18-64578301-1	chr18	64577801	64578801	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001488, intron 4 of 27)	intron (NM_001001488, intron 4 of 27)	-61744.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	2.86	3.23	4.62	2.7	1.87	1.61	4.22	1.77	2.5
Merged-chr8-123924897-1	chr8	123924397	123925397	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172288, intron 12 of 25)	intron (NM_172288, intron 12 of 25)	24368.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	5.15	0.92	1.85	2.02	0.0	3.22	1.06	3.98	3.75
Merged-chr3-156563270-1	chr3	156562770	156563770	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039094, intron 1 of 6)	intron (NM_001039094, intron 1 of 6)	1476.0	NM_001039094	320840.0	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	2.86	0.92	3.7	2.7	4.2	1.61	1.06	4.86	1.25
Merged-chr3-51046152-1	chr3	51045652	51046652	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178295.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	5.72	2.76	5.55	4.05	5.6	4.82	7.39	0.88	1.87
Merged-chr1-140269089-1	chr1	140268589	140269589	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 1 of 27)	intron (NM_001081027, intron 1 of 27)	22832.0	NM_001081027	240776.0	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	13.73	16.13	14.8	22.27	13.53	8.04	11.62	15.92	5.0
Merged-chr3-9154374-1	chr3	9153874	9154874	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92410.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	2.86	2.3	3.7	4.72	3.27	5.63	4.22	1.77	2.5
Merged-chr17-64538541-1	chr17	64538041	64539041	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045899, intron 1 of 3)	intron (NR_045899, intron 1 of 3)	17049.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	5.15	2.76	1.85	2.02	5.13	0.0	3.17	2.65	2.5
Merged-chr1-43299672-1	chr1	43299172	43300172	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-102911.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	1.14	3.23	0.0	4.72	1.87	1.61	4.22	4.86	1.25
Merged-chr16-93191511-1	chr16	93191011	93192011	+	642.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	161678.0	NR_040486	69857.0	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	5.72	7.83	3.7	0.67	6.53	5.63	2.11	0.44	6.25
Merged-chr4-141385336-1	chr4	141384836	141385836	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001146307, exon 18 of 19)	exon (NM_001146307, exon 18 of 19)	12763.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	5.72	0.46	5.55	2.7	1.4	1.61	1.06	0.0	0.62
Merged-chr4-148604965-1	chr4	148604465	148605465	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010767)	TTS (NM_010767)	2421.0	NM_001003893	17175.0	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	7.44	1.38	4.62	1.35	2.33	0.0	2.11	0.0	2.5
Merged-chr12-105010566-1	chr12	105010066	105011066	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172500)	promoter-TSS (NM_172500)	-757.0	NM_172500	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	4.0	4.61	0.0	5.4	2.33	11.25	5.28	0.44	5.0
Merged-chr2-4505002-1	chr2	4504502	4505502	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 5 of 23)	ID_B1|SINE|B4	-54752.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	12.59	9.22	12.95	8.77	2.8	6.43	21.12	15.03	6.87
Merged-chr2-128573356-1	chr2	128572856	128573856	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18985.0	NM_001310641	241634.0	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	8.58	2.76	0.92	3.37	2.33	8.04	2.11	2.21	1.25
Merged-chr17-30972205-1	chr17	30971705	30972705	+	642.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177465, intron 5 of 21)	intron (NM_177465, intron 5 of 21)	17522.0	NM_177465	52020.0	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.57	3.69	9.25	3.37	2.33	4.82	3.17	4.42	0.0
Merged-chr15-13319429-1	chr15	13318929	13319929	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145754.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	1.14	1.84	0.0	1.35	4.2	3.22	4.22	3.54	2.5
Merged-chr12-26071710-1	chr12	26071210	26072210	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	138795.0	NR_131149	629481.0	Mm.390460	NR_131149	ENSMUSG00000113550	Gm29687	-	predicted gene, 29687	ncRNA	5.15	3.23	2.77	2.02	2.33	2.41	0.0	0.0	2.5
Merged-chr14-104901328-1	chr14	104900828	104901828	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015593, intron 3 of 5)	MTD|LTR|ERVL-MaLR	213348.0	NR_040628	100502987.0	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	5.15	5.07	0.0	3.37	2.33	4.02	2.11	3.1	2.5
Merged-chr2-32591289-1	chr2	32590789	32591789	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011373, intron 2 of 4)	intron (NM_011373, intron 2 of 4)	4211.0	NM_011373	20448.0	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	10.3	10.14	24.97	15.52	8.4	22.51	15.84	10.17	9.99
Merged-chr14-29970736-1	chr14	29970236	29971236	+	642.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019979, intron 2 of 4)	MTC|LTR|ERVL-MaLR	2356.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	15.45	9.22	18.5	9.45	4.67	8.04	5.28	2.65	8.12
Merged-chr10-128731175-3	chr10	128730684	128731684	+	641.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016811, exon 11 of 24)	exon (NM_016811, exon 11 of 24)	12892.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	2.29	3.69	0.0	5.4	3.73	1.61	3.17	0.88	3.75
Merged-chr5-30649515-3	chr5	30649040	30650040	+	641.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	1601.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	73.22	104.6	107.29	112.0	146.48	112.53	167.93	133.09	76.82
Merged-chr19-16130902-3	chr19	16130395	16131395	+	641.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1936.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	21.74	21.2	13.87	18.89	16.79	18.49	28.52	21.22	11.87
Merged-chr7-27542356-2	chr7	27541857	27542857	+	641.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317355, intron 3 of 13)	intron (NM_001317355, intron 3 of 13)	10861.0	NM_011116	18807.0	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	44.05	27.19	24.05	72.87	57.85	55.46	84.49	65.0	28.73
Merged-chr6-41605404-2	chr6	41604884	41605884	+	641.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146351)	promoter-TSS (NM_001146351)	-98.0	NM_001146351	13848.0	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	4.0	0.46	3.7	7.42	0.93	1.61	5.28	3.54	1.25
Merged-chr4-88725572-3	chr4	88725059	88726059	+	641.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3051.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	23.45	39.17	22.2	12.82	14.46	29.74	29.57	23.43	21.23
Merged-chr8-53627113-2	chr8	53626607	53627607	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146208, intron 1 of 9)	RLTR25B|LTR|ERVK	11958.0	NM_146208	234258.0	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	23.45	14.75	14.8	20.24	14.0	12.86	19.01	28.3	24.98
Merged-chr19-4100994-2	chr19	4100504	4101504	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008851, exon 1 of 23)	5' UTR (NM_008851, exon 1 of 23)	382.0	NM_008851	18739.0	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	8.58	5.99	13.87	14.84	4.67	1.61	11.62	8.4	10.62
Merged-chr10-39909055-2	chr10	39908559	39909559	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9821.0	NR_033628	213332.0	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	4.58	1.38	1.85	4.72	10.26	9.65	4.22	0.88	3.12
Merged-chr19-18622108-1	chr19	18621608	18622608	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	Lx3A|LINE|L1	9705.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	9.72	20.27	29.6	20.92	17.26	32.96	25.35	21.67	20.61
Merged-chr2-170116896-2	chr2	170116398	170117398	+	641.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033299, intron 2 of 5)	intron (NM_001033299, intron 2 of 5)	14322.0	NM_001033299	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	17.16	8.75	11.1	12.82	9.33	11.25	14.79	7.07	22.48
Merged-chr12-26342363-1	chr12	26341863	26342863	+	641.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 2 of 8)	intron (NM_080563, intron 2 of 8)	-4347.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	4.58	3.69	11.1	4.72	5.13	4.82	4.22	0.44	2.5
Merged-chr9-78191947-3	chr9	78191431	78192431	+	641.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010357)	promoter-TSS (NM_010357)	-35.0	NM_010357	14860.0	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	4.0	5.07	10.17	8.1	7.0	11.25	12.67	8.84	3.12
Merged-chr15-78405964-1	chr15	78405464	78406464	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001162493)	promoter-TSS (NM_001162493)	-105.0	NM_009437	22117.0	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	35.47	29.03	21.27	20.92	28.46	45.01	36.97	23.43	25.61
Merged-chr7-126565827-1	chr7	126565327	126566327	+	641.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146200, intron 2 of 20)	intron (NM_146200, intron 2 of 20)	539.0	NM_146200	56347.0	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	35.47	31.33	20.35	56.68	45.72	53.05	57.03	45.99	35.6
Merged-chr3-9067275-3	chr3	9066777	9067777	+	641.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040597, intron 2 of 2)	intron (NR_040597, intron 2 of 2)	5313.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	5.72	1.38	0.0	5.4	3.27	1.61	2.11	3.1	6.25
Merged-chr9-85375279-1	chr9	85374779	85375779	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48129.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	10.3	4.15	7.4	4.05	5.13	4.82	11.62	9.29	6.87
Merged-chr6-88627487-1	chr6	88626987	88627987	+	641.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001278671)	promoter-TSS (NM_001278671)	-39.0	NM_001278671	74589.0	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	12.01	12.9	16.65	33.06	24.26	16.08	6.34	8.4	5.0
Merged-chr3-127526836-1	chr3	127526336	127527336	+	641.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18253.0	NR_146435	110008574.0		NR_146435		LOC110008574	-	miR-302 host gene	ncRNA	2.29	0.92	3.7	2.02	3.27	5.63	36.97	41.56	21.23
Merged-chr10-42697202-3	chr10	42696696	42697696	+	641.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172416, intron 4 of 5)	intron (NM_172416, intron 4 of 5)	18280.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	6.29	3.23	1.85	4.72	2.33	0.8	3.17	7.52	5.62
Merged-chr13-102866237-2	chr13	102865734	102866734	+	641.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	105979.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	9.72	8.75	8.32	10.8	7.46	6.43	4.22	5.75	11.24
Merged-chr12-35182887-2	chr12	35182386	35183386	+	641.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12011.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	4.0	4.61	3.7	1.35	3.27	1.61	3.17	0.0	0.0
Merged-chrX-60403368-2	chrX	60402888	60403888	+	641.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	617.0	NM_001359002	320940.0	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	49.77	26.26	19.42	43.18	41.05	28.13	52.81	30.95	18.11
Merged-chr2-17740477-2	chr2	17739950	17740950	+	641.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9382.0	NM_028757	74103.0	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	2.86	3.23	3.7	5.4	0.47	0.0	0.0	2.21	7.49
Merged-chr15-59568020-3	chr15	59567511	59568511	+	641.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-80643.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.29	10.14	1.85	11.47	9.8	8.04	7.39	7.52	1.25
Merged-chr17-35168960-2	chr17	35168462	35169462	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4085.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	31.46	39.17	18.5	27.66	17.26	32.96	33.8	34.49	32.48
Merged-chr10-13870766-1	chr10	13870266	13871266	+	641.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152745)	promoter-TSS (NR_152745)	-514.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	41.19	52.99	17.57	56.0	73.71	57.87	43.3	54.39	13.74
Merged-chr8-83145652-2	chr8	83145152	83146152	+	641.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-19700.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	24.03	33.64	12.95	34.41	22.39	34.56	24.29	15.03	26.85
Merged-chr16-75933499-1	chr16	75932999	75933999	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24233.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	1.14	6.91	1.85	4.72	5.13	8.04	2.11	3.54	3.75
Merged-chr12-116416732-2	chr12	116416232	116417232	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133762, intron 7 of 28)	MTD|LTR|ERVL-MaLR	11330.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	24.6	26.73	16.65	16.87	16.33	10.45	17.96	14.59	11.87
Merged-chr7-141020609-1	chr7	141020109	141021109	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	-3717.0	NM_001033632	213002.0	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	9.15	8.29	8.32	11.47	7.0	18.49	31.69	22.11	19.36
Merged-chr4-142077176-1	chr4	142076676	142077676	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	ID_B1|SINE|B4	-7122.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	64.07	61.28	66.6	67.47	47.58	58.68	146.81	119.39	48.09
Merged-chr3-84769563-1	chr3	84769063	84770063	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46014.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.58	4.15	1.85	24.29	32.19	40.19	11.62	2.65	3.75
Merged-chr7-30348056-2	chr7	30347558	30348558	+	641.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	14714.0	NM_175478	233067.0	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	1.72	0.0	0.0	2.02	0.0	0.0	2.11	1.77	2.5
Merged-chr19-7340904-2	chr19	7340431	7341431	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	929.0	NM_001080389	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	88.67	76.95	72.15	74.22	73.24	110.12	86.61	84.45	72.45
Merged-chr3-53464341-1	chr3	53463841	53464841	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173382, intron 1 of 12)	intron (NM_173382, intron 1 of 12)	524.0	NM_173382	212127.0	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	77.8	136.39	71.22	104.58	97.5	98.06	122.52	104.79	51.84
Merged-chr18-88774295-1	chr18	88773795	88774795	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	119912.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	3.43	4.61	0.0	2.7	7.46	8.04	3.17	1.33	0.0
Merged-chr1-37999349-2	chr1	37998845	37999845	+	641.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	intron (NM_198303, intron 1 of 23)	1335.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	41.76	66.81	57.35	37.11	38.72	61.09	69.71	77.82	62.45
Merged-chr4-98367620-3	chr4	98367131	98368131	+	641.472229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053157, intron 4 of 6)	Lx|LINE|L1	15634.0	NM_053157	94043.0	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	4.0	1.84	1.85	5.4	7.0	2.41	4.22	2.21	5.62
Merged-chr15-96569318-2	chr15	96568788	96569788	+	641.458374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72674.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	22.31	20.74	23.12	22.27	18.66	15.27	22.18	20.34	23.11
Merged-chr19-15999453-2	chr19	15998890	15999890	+	641.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	14315.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	13.16	11.98	7.4	2.7	12.13	3.22	16.9	15.48	10.62
Merged-chr15-84845004-2	chr15	84844494	84845494	+	641.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	10105.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	9.72	5.07	1.85	8.1	0.93	1.61	14.79	13.27	5.0
Merged-chr18-24050081-1	chr18	24049581	24050581	+	641.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-29268.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	3.43	1.84	5.55	4.72	0.93	1.61	3.17	3.98	1.25
Merged-chr5-66069219-3	chr5	66068732	66069732	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139065, intron 2 of 6)	intron (NM_139065, intron 2 of 6)	28947.0	NM_139065	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	52.06	70.96	47.17	51.28	62.51	70.73	76.05	94.18	41.22
Merged-chr7-29001271-1	chr7	29000771	29001771	+	641.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355054, intron 28 of 31)	intron (NM_001355054, intron 28 of 31)	18417.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.57	2.76	6.47	6.07	0.47	4.82	2.11	1.33	3.12
Merged-chr7-66108137-3	chr7	66107711	66108711	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1304.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	6.86	11.98	1.85	5.4	5.13	14.47	9.51	8.4	5.62
Merged-chr15-102392608-3	chr15	102392101	102393101	+	641.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-13715.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	69.79	95.84	49.02	67.47	62.98	40.19	33.8	48.64	39.97
Merged-chrX-102619930-3	chrX	102619435	102620435	+	641.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173021, intron 6 of 31)	L1MC4|LINE|L1	24311.0	NM_008832	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	4.0	4.61	5.55	9.45	4.2	3.22	3.17	7.07	1.25
Merged-chr2-129186272-2	chr2	129185817	129186817	+	641.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5644.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	15.45	9.68	14.8	15.52	3.27	8.84	22.18	8.84	11.87
Merged-chr14-63413094-2	chr14	63412600	63413600	+	641.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	4087.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	42.9	37.78	16.65	36.43	38.25	36.17	45.42	17.69	11.24
Merged-chr4-115709990-3	chr4	115709503	115710503	+	641.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28070.0	NM_172698	230648.0	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	2.86	1.84	1.85	4.72	2.8	4.82	3.17	2.65	1.25
Merged-chr2-27281171-2	chr2	27280715	27281715	+	641.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-33912.0	NM_138665	192166.0	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.72	5.99	12.95	6.75	1.4	7.23	6.34	1.77	0.0
Merged-chr15-99705769-3	chr15	99705269	99706269	+	641.133362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031842, intron 6 of 12)	intron (NM_031842, intron 6 of 12)	3482.0	NM_031842	83797.0	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	5.15	4.15	9.25	3.37	1.4	3.22	6.34	2.21	5.0
Merged-chr15-51899297-2	chr15	51898801	51899801	+	641.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21860.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	3.43	6.91	3.7	4.72	2.33	1.61	2.11	2.65	3.75
Merged-chr3-79794394-2	chr3	79793900	79794900	+	641.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	48262.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	9.72	9.68	11.1	10.8	8.4	9.65	23.24	16.8	18.11
Merged-chr10-81517425-3	chr10	81516957	81517957	+	641.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	intron (NM_010304, intron 1 of 6)	6768.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	14.3	6.45	5.55	4.72	3.27	6.43	10.56	1.77	9.37
Merged-chr8-11005372-1	chr8	11004872	11005872	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081212, exon 1 of 2)	exon (NM_001081212, exon 1 of 2)	-2478.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	4.58	2.3	0.0	3.37	0.47	4.82	0.0	0.44	3.75
Merged-chr8-56293949-1	chr8	56293449	56294449	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008278)	promoter-TSS (NM_008278)	-603.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	81.8	117.5	69.37	103.23	79.31	69.93	109.84	147.24	65.58
Merged-chr3-142563622-2	chr3	142563070	142564070	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355403, intron 3 of 11)	intron (NM_001355403, intron 3 of 11)	3214.0	NM_001289493	55932.0	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	18.31	11.06	9.25	5.4	6.53	11.25	19.01	20.78	11.24
Merged-chr3-90220776-1	chr3	90220276	90221276	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-8.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	32.61	38.25	54.57	31.04	41.52	40.99	32.74	25.2	34.97
Merged-chr17-15621205-1	chr17	15620705	15621705	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10583.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	5.15	4.15	2.77	5.4	3.73	4.82	4.22	3.98	1.25
Merged-chr19-29420668-1	chr19	29420168	29421168	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 1 of 5)	intron (NM_021396, intron 1 of 5)	9749.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	46.91	35.94	25.9	42.51	29.86	30.54	36.97	39.8	25.61
Merged-chr9-57998468-1	chr9	57997968	57998968	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346787, intron 1 of 9)	intron (NM_001346787, intron 1 of 9)	444.0	NM_001346787	13070.0	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	1.14	0.92	5.55	0.0	2.8	0.0	1.06	3.1	0.0
Merged-chr16-4210445-1	chr16	4209945	4210945	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025432, intron 1 of 30)	intron (NM_001025432, intron 1 of 30)	2959.0	NM_001025432	12914.0	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	10.3	7.37	18.5	4.05	4.2	11.25	9.51	7.07	3.75
Merged-chr9-55166892-1	chr9	55166392	55167392	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346657, intron 2 of 11)	intron (NM_001346657, intron 2 of 11)	16809.0	NM_001346658	109161.0	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	44.62	23.96	35.15	23.62	25.19	22.51	29.57	21.67	16.86
Merged-chr4-94477207-2	chr4	94476708	94477708	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	79588.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	6.86	7.37	6.47	9.45	8.4	8.04	34.85	36.26	16.86
Merged-chr8-84970395-1	chr8	84969895	84970895	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001317385, intron 2 of 5)	intron (NM_001317385, intron 2 of 5)	773.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	11.44	14.75	18.5	26.31	8.4	16.08	30.63	17.24	21.23
Merged-chr2-132145480-1	chr2	132144980	132145980	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355430)	promoter-TSS (NM_001355430)	-160.0	NM_001355430	54338.0	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	16.59	9.22	9.25	12.82	9.33	9.65	17.96	13.27	5.62
Merged-chr4-141565390-1	chr4	141564890	141565890	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19228.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	8.58	8.75	3.7	12.14	10.73	8.04	7.39	6.63	8.12
Merged-chr19-24616597-1	chr19	24616097	24617097	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57411.0	NM_183160	226040.0	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	1.72	0.92	0.0	2.7	1.4	3.22	0.0	3.54	1.25
Merged-chr18-5536989-2	chr18	5536500	5537500	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033552, intron 4 of 6)	intron (NR_033552, intron 4 of 6)	-54860.0	NM_011546	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	8.58	8.75	11.1	12.14	9.33	4.82	7.39	4.86	5.0
Merged-chr10-93049660-1	chr10	93049160	93050160	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 5 of 67)	intron (NM_001347060, intron 5 of 67)	31936.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.57	2.76	5.55	2.7	1.4	0.0	7.39	6.63	7.49
Merged-chr11-83645232-1	chr11	83644732	83645732	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4146.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	14.3	5.53	14.8	10.12	11.66	12.06	8.45	3.98	5.0
Merged-chr7-99711384-1	chr7	99710884	99711884	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175316)	promoter-TSS (NM_175316)	-44.0	NM_175316	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	4.0	2.3	3.7	2.02	4.67	3.22	2.11	0.0	5.0
Merged-chr19-61225974-2	chr19	61225513	61226513	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009970, exon 7 of 12)	exon (NM_009970, exon 7 of 12)	2405.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	28.6	22.58	25.9	38.46	14.46	25.72	39.08	35.82	24.36
Merged-chr15-5134334-1	chr15	5133834	5134834	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-9527.0	NM_001013367	105787.0	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	1.14	2.3	2.77	4.72	2.33	0.0	3.17	1.33	2.5
Merged-chr12-33429994-1	chr12	33429494	33430494	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172253, intron 1 of 3)	CpG	370.0	NM_172253	28071.0	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	246.56	276.01	188.69	201.74	280.37	193.71	243.98	235.68	124.91
Merged-chr9-45296723-1	chr9	45296223	45297223	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22377.0	NM_001013373	214531.0	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	36.04	34.1	45.32	49.93	34.99	50.64	48.58	35.82	19.36
Merged-chr5-92332138-1	chr5	92331638	92332638	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 1 of 10)	intron (NM_001310664, intron 1 of 10)	311.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	41.76	37.78	41.62	26.99	34.99	43.4	31.69	39.35	36.22
Merged-chr2-23048234-1	chr2	23047734	23048734	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7993.0	NM_145994	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	5.72	3.23	1.85	8.1	4.2	6.43	7.39	7.52	7.49
Merged-chr1-162626090-1	chr1	162625590	162626590	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13060.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	25.17	23.5	7.4	46.56	27.06	58.68	26.4	19.9	17.49
Merged-chr10-81300310-1	chr10	81299810	81300810	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293647, intron 1 of 17)	PB1D7|SINE|Alu	7347.0	NM_001146687	18717.0	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	40.04	42.39	49.95	41.83	23.33	43.4	23.24	23.43	22.48
Merged-chr8-67957080-1	chr8	67956580	67957580	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17494.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	11.44	12.44	7.4	20.92	25.66	17.68	9.51	18.13	11.24
Merged-chr2-76644288-2	chr2	76643784	76644784	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011871, intron 2 of 7)	intron (NM_011871, intron 2 of 7)	3710.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	8.58	6.45	16.65	2.7	7.0	8.04	5.28	7.07	5.0
Merged-chr3-107671704-1	chr3	107671204	107672204	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145542, intron 6 of 16)	intron (NM_145542, intron 6 of 16)	24352.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	21.74	10.14	9.25	12.82	11.66	11.25	19.01	11.05	3.75
Merged-chr10-37233067-1	chr10	37232567	37233567	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-94141.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	117.27	133.17	79.55	104.58	79.31	96.45	87.66	134.86	83.06
Merged-chr1-34840458-1	chr1	34839958	34840958	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	2592.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	45.19	47.46	53.65	64.77	64.38	31.35	86.61	70.3	34.97
Merged-chr1-36053805-1	chr1	36053305	36054305	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-14595.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	20.02	18.89	12.95	32.39	19.59	29.74	23.24	14.15	13.12
Merged-chr17-67223942-1	chr17	67223442	67224442	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	L1MB5|LINE|L1	130517.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	5.72	5.07	0.0	2.02	5.13	1.61	17.96	22.99	11.24
Merged-chr13-104157855-1	chr13	104157355	104158355	+	641.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360778, intron 5 of 11)	ERVB2_1A-I_MM-int|LTR|ERVK	20611.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	8.58	14.28	36.07	4.05	10.26	9.65	5.28	3.54	6.87
Merged-chr18-53224422-1	chr18	53223922	53224922	+	641.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21240.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	9.72	5.53	16.65	4.72	2.33	8.04	29.57	25.65	11.87
Merged-chr13-98998142-1	chr13	98997642	98998642	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13577.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	24.6	16.59	8.32	41.16	42.92	62.7	35.91	52.18	17.49
Merged-chr3-145628068-2	chr3	145627570	145628570	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21915.0	NM_010516	16007.0	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	1.72	1.38	2.77	4.05	1.87	0.0	4.22	1.33	2.5
Merged-chr11-96833164-1	chr11	96832664	96833664	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3196.0	NM_008686	18023.0	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	17.73	16.13	9.25	5.4	12.6	3.22	0.0	3.1	12.49
Merged-chr6-97759497-1	chr6	97758997	97759997	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47561.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	1.72	2.76	1.85	6.07	3.27	1.61	3.17	0.88	0.0
Merged-chr2-166758017-1	chr2	166757517	166758517	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35750.0	NM_023815	76367.0	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	1.72	3.69	12.02	6.07	3.73	5.63	9.51	9.29	1.87
Merged-chr7-30321117-1	chr7	30320617	30321617	+	641.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033140)	TTS (NM_001033140)	1258.0	NM_001033140	68332.0	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	22.31	29.95	29.6	35.76	38.72	21.7	12.67	10.61	16.86
Merged-chr6-108709711-3	chr6	108709179	108710179	+	640.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48745.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	18.88	10.14	1.85	11.47	5.6	4.02	15.84	9.29	0.0
Merged-chr6-146762506-3	chr6	146762006	146763006	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172734, intron 3 of 13)	intron (NM_172734, intron 3 of 13)	37576.0	NM_172734	232533.0	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	3.43	0.92	0.92	4.05	3.27	4.02	1.06	3.98	1.25
Merged-chr18-58615381-3	chr18	58614869	58615869	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44113.0	NM_025478	66307.0	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	5.15	2.3	3.7	6.07	0.93	1.61	0.0	0.88	5.0
Merged-chr4-132019142-3	chr4	132018653	132019653	+	640.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	29925.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	62.35	62.21	44.4	74.22	58.31	57.87	104.56	93.3	48.71
Merged-chr6-95098585-2	chr6	95098106	95099106	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19025.0	NR_153843	102634268.0	Mm.396160	NR_153843		Kbtbd8os	1700010K10Rik	kelch repeat and BTB (POZ) domain containing 8, opposite strand	ncRNA	1.72	1.84	0.0	6.75	0.93	4.02	1.06	3.1	3.75
Merged-chr2-32834662-2	chr2	32834157	32835157	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	12575.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	46.34	45.62	62.9	52.63	46.65	46.62	44.36	42.01	38.1
Merged-chr7-66386014-2	chr7	66385530	66386530	+	640.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146191, intron 1 of 33)	Lx7|LINE|L1	2311.0	NM_146191	233328.0	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	16.02	21.66	37.92	10.12	10.73	20.9	21.12	24.32	24.98
Merged-chr18-69300694-2	chr18	69300216	69301216	+	640.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43776.0	NM_013685	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	12.59	11.06	22.2	5.4	13.06	9.65	10.56	7.07	6.87
Merged-chr7-125482482-1	chr7	125481982	125482982	+	640.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	9060.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	4.0	5.99	6.47	4.72	2.33	5.63	14.79	10.61	5.0
Merged-chr7-30287228-1	chr7	30286728	30287728	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-4467.0	NM_001360763	76686.0	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	6.29	4.15	1.85	11.47	2.8	8.84	4.22	3.54	2.5
Merged-chr11-94611592-3	chr11	94611118	94612118	+	640.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9832.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	38.33	41.47	24.97	66.8	62.05	90.02	49.64	57.04	27.48
Merged-chr2-30827630-1	chr2	30827130	30828130	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133346, intron 1 of 5)	intron (NM_133346, intron 1 of 5)	670.0	NM_133346	72323.0	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	39.47	58.06	62.9	79.62	103.1	76.36	68.65	73.4	53.71
Merged-chr7-19716508-1	chr7	19716008	19717008	+	640.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008990)	TTS (NM_008990)	-1079.0	NM_016871	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	100.11	70.5	61.97	102.56	47.12	49.03	78.16	53.06	47.46
Merged-chr1-171397747-1	chr1	171397247	171398247	+	640.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005508, intron 2 of 11)	intron (NM_001005508, intron 2 of 11)	8787.0	NM_001005508	226652.0	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	26.89	24.42	31.45	25.64	22.39	32.15	16.9	18.13	13.74
Merged-chr2-33973616-2	chr2	33973106	33974106	+	640.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-85660.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	5.15	1.38	11.1	2.02	1.4	3.22	3.17	0.44	5.0
Merged-chr12-3739288-2	chr12	3738792	3739792	+	640.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162465, intron 12 of 17)	intron (NM_001162465, intron 12 of 17)	-67688.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	77.23	100.91	75.85	81.64	93.77	57.87	166.88	156.97	75.57
Merged-chr17-24488773-4	chr17	24488217	24489217	+	640.541687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027937)	promoter-TSS (NM_027937)	-66.0	NM_001360469	268932.0	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	17.73	5.53	6.47	8.1	3.73	4.82	11.62	6.63	0.62
Merged-chr7-58677414-2	chr7	58676942	58677942	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	19240.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	12.59	10.6	22.2	7.42	6.53	0.0	9.51	11.94	5.62
Merged-chr11-100826797-2	chr11	100826285	100827285	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-4215.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	9.72	8.75	11.1	17.54	10.73	17.68	10.56	8.84	7.49
Merged-chr6-29322893-2	chr6	29322382	29323382	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207258, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	3742.0	NM_001289664	330277.0	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	8.58	0.92	1.85	1.35	0.47	0.0	3.17	1.33	0.0
Merged-chr10-94690556-1	chr10	94690056	94691056	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029852, intron 1 of 15)	RMER10A|LTR|ERVL	1766.0	NM_029852	77048.0	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.0	12.44	7.4	7.42	7.0	4.82	9.51	7.52	1.25
Merged-chr11-88132093-1	chr11	88131593	88132593	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198013, intron 1 of 10)	intron (NM_198013, intron 1 of 10)	32947.0	NM_198013	103841.0	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	4.58	3.23	3.7	8.1	3.27	5.63	8.45	3.98	6.87
Merged-chr9-16363905-2	chr9	16363389	16364389	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	14342.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	4.0	6.91	5.55	4.05	3.73	3.22	7.39	7.52	6.25
Merged-chr11-75596629-1	chr11	75596129	75597129	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008850, intron 2 of 11)	intron (NM_008850, intron 2 of 11)	3602.0	NR_110477	654359.0	Mm.439961	NR_110477		Gm12338	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	21.74	23.96	51.8	29.69	22.86	39.39	31.69	34.05	28.73
Merged-chr9-64936679-2	chr9	64936193	64937193	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144813, intron 3 of 9)	intron (NM_144813, intron 3 of 9)	14914.0	NM_144813	214111.0	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	4.58	1.84	1.85	2.7	4.2	9.65	3.17	2.21	0.62
Merged-chr18-69594222-1	chr18	69593722	69594722	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	248062.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	87.52	127.18	86.02	89.06	99.83	91.63	126.74	155.64	79.94
Merged-chr7-67462590-1	chr7	67462090	67463090	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89732.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	127.0	167.73	131.34	139.67	156.75	243.55	167.93	206.49	133.65
Merged-chr7-45078630-1	chr7	45078130	45079130	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025533)	TTS (NM_025533)	13583.0	NM_026555	52377.0	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	5.72	4.61	2.77	2.7	3.73	8.04	7.39	3.1	3.12
Merged-chr13-45750199-1	chr13	45749699	45750699	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	214792.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.86	2.76	2.77	4.72	1.87	4.82	1.06	3.98	5.0
Merged-chr11-107113336-1	chr11	107112836	107113836	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359590, intron 1 of 27)	intron (NM_001359590, intron 1 of 27)	18586.0	NM_176850	207165.0	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	5.15	2.3	8.32	8.1	8.86	2.41	7.39	0.88	3.75
Merged-chr1-89943424-3	chr1	89942924	89943924	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12248.0	NM_010262	14472.0	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	6.29	1.84	0.0	5.4	3.27	1.61	7.39	0.44	3.12
Merged-chr9-54513662-1	chr9	54513162	54514162	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12036.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	2.86	5.53	1.85	7.42	2.8	2.41	6.34	1.77	8.74
Merged-chr15-40955369-2	chr15	40954869	40955869	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-218332.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	40.62	44.7	37.0	67.47	69.04	51.44	51.75	58.81	43.72
Merged-chr11-59302861-1	chr11	59302361	59303361	+	640.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4069.0	NM_139298	216795.0	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	2.29	2.3	1.85	1.35	2.33	1.61	1.06	0.44	0.0
Merged-chr15-97941509-2	chr15	97941025	97942025	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22704.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	17.16	6.45	12.02	14.17	6.53	3.22	12.67	6.63	11.24
Merged-chr1-45853000-1	chr1	45852500	45853500	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57834.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	2.29	3.69	1.85	6.75	2.8	9.65	6.34	4.42	5.62
Merged-chr7-45563872-1	chr7	45563372	45564372	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025330, intron 6 of 8)	RSINE1|SINE|B4	-6281.0	NM_009737	12036.0	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat(m)|Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	6.86	5.53	11.1	5.4	2.33	10.45	7.39	3.98	1.25
Merged-chr10-94587479-1	chr10	94586979	94587979	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172051, exon 4 of 4)	3' UTR (NM_172051, exon 4 of 4)	-1280.0	NR_106070	102466817.0		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	6.86	2.3	7.4	10.8	1.87	6.43	9.51	3.1	5.0
Merged-chr16-21380873-2	chr16	21380387	21381387	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42231.0	NM_001285893	209018.0	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	9.15	10.14	14.8	16.19	7.0	12.06	14.79	6.19	7.49
Merged-chr2-166995490-2	chr2	166994967	166995967	+	640.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	832.0	NM_011490	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	93.24	86.63	97.12	92.44	64.38	82.79	115.12	105.24	64.33
Merged-chr7-28435844-3	chr7	28435359	28436359	+	640.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175021, intron 1 of 12)	CpG	332.0	NM_175021	233033.0	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	146.45	104.14	97.12	89.74	59.25	56.27	137.3	70.3	96.18
Merged-chr12-108309557-2	chr12	108309028	108310028	+	640.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001044380, intron 1 of 8)	L2c|LINE|L2	3258.0	NM_001044380	214305.0	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	6.86	0.92	2.77	1.35	0.93	4.82	1.06	0.0	8.74
Merged-chr7-116476044-2	chr7	116475557	116476557	+	640.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28312.0	NM_001130479	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	29.17	32.25	27.75	31.71	31.26	59.48	29.57	36.26	33.1
Merged-chr13-41080422-2	chr13	41079918	41080918	+	640.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145803)	promoter-TSS (NM_001145803)	-712.0	NM_001145802	17152.0	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	5.72	4.15	3.7	8.1	9.33	1.61	10.56	11.94	9.99
Merged-chr13-33084405-2	chr13	33083918	33084918	+	640.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173052, intron 1 of 6)	intron (NM_173052, intron 1 of 6)	315.0	NM_173052	282663.0	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	16.59	23.96	40.7	15.52	8.86	9.65	31.69	31.84	30.6
Merged-chr13-30834537-1	chr13	30834037	30835037	+	640.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025588, intron 23 of 27)	intron (NM_025588, intron 23 of 27)	85304.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	37.18	23.04	11.1	47.23	37.79	27.33	32.74	16.36	13.74
Merged-chr8-78649171-1	chr8	78648671	78649671	+	640.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009981, intron 5 of 10)	intron (NM_001009981, intron 5 of 10)	139843.0	NM_001282108	76775.0	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	2.29	1.38	5.55	4.72	1.87	3.22	1.06	0.44	1.25
Merged-chr4-102574883-1	chr4	102574383	102575383	+	640.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	4823.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	96.68	93.08	74.0	90.41	72.78	50.64	68.65	70.75	46.84
Merged-chr3-28026359-2	chr3	28025854	28026854	+	640.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008875, intron 3 of 25)	RMER10A|LTR|ERVL	42183.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	10.87	16.59	23.12	22.27	19.13	23.31	45.42	39.8	49.96
Merged-chr1-154040353-1	chr1	154039853	154040853	+	640.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	140424.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	33.18	20.74	27.75	28.34	18.66	28.94	21.12	17.24	23.73
Merged-chr6-49008158-2	chr6	49007654	49008654	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8538.0	NR_126454	75347.0	Mm.207324	NR_126454	ENSMUSG00000107656	4930563H07Rik	-	RIKEN cDNA 4930563H07 gene	ncRNA	3.43	4.61	0.0	4.05	0.93	3.22	7.39	2.21	1.25
Merged-chr1-57837425-2	chr1	57836870	57837870	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144882, intron 3 of 13)	intron (NM_144882, intron 3 of 13)	-8201.0	NM_001164566	67198.0	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	21.17	27.65	4.62	70.17	62.51	70.73	43.3	22.55	10.62
Merged-chr19-11324272-2	chr19	11323773	11324773	+	640.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027836, intron 5 of 6)	intron (NM_027836, intron 5 of 6)	10422.0	NM_001276398	109225.0	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	17.16	5.99	0.0	14.84	4.67	8.84	6.34	11.05	7.49
Merged-chr11-116095220-3	chr11	116094730	116095730	+	640.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8235.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	149.31	78.33	81.4	79.62	40.12	45.01	77.1	86.22	54.33
Merged-chr8-117543144-1	chr8	117542644	117543644	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 2 of 32)	intron (NM_172285, intron 2 of 32)	44869.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	9.72	4.15	12.95	4.05	4.67	5.63	5.28	0.44	2.5
Merged-chr8-69005414-1	chr8	69004914	69005914	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83322.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	53.2	56.68	43.47	58.7	29.39	39.39	80.27	88.43	56.21
Merged-chr8-124746146-1	chr8	124745646	124746646	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	RSINE1|SINE|B4	5663.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	6.29	4.61	16.65	6.07	4.67	3.22	1.06	0.0	1.25
Merged-chr5-93120672-2	chr5	93120185	93121185	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	27269.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	7.44	7.37	7.4	7.42	4.67	10.45	2.11	6.19	7.49
Merged-chr1-148906871-1	chr1	148906371	148907371	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1015568.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	6.29	6.91	9.25	12.82	3.73	3.22	6.34	8.4	7.49
Merged-chr2-27755112-1	chr2	27754612	27755612	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 7 of 9)	intron (NM_001290481, intron 7 of 9)	44529.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.3	10.6	26.82	8.1	7.0	36.17	5.28	16.8	16.86
Merged-chr3-15861490-1	chr3	15860990	15861990	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-13003.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	7.44	5.07	21.27	8.77	7.0	13.66	7.39	8.4	8.12
Merged-chr1-54883202-1	chr1	54882702	54883702	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	43185.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	9.15	7.83	7.4	12.14	10.26	16.08	8.45	5.31	9.99
Merged-chr16-91862311-1	chr16	91861811	91862811	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110275, intron 25 of 28)	intron (NM_001110275, intron 25 of 28)	69319.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	56.06	64.97	47.17	84.34	78.84	117.35	117.24	90.64	59.33
Merged-chr2-110205053-1	chr2	110204553	110205553	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	100672.0	NM_130452	170442.0	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	5.15	6.91	4.62	3.37	3.73	0.0	3.17	2.21	2.5
Merged-chr14-21988447-2	chr14	21987945	21988945	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145459, intron 1 of 2)	CpG-4314	1156.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	4.0	0.46	5.55	1.35	3.27	4.82	3.17	3.1	1.25
Merged-chr4-105483464-1	chr4	105482964	105483964	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	326117.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	12.01	9.68	3.7	8.1	13.53	13.66	9.51	12.82	12.49
Merged-chr2-165792936-1	chr2	165792436	165793436	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001252585, exon 19 of 22)	exon (NM_001252585, exon 19 of 22)	65237.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	14.3	4.15	11.1	7.42	6.53	20.9	15.84	8.4	23.73
Merged-chr2-69017125-2	chr2	69016620	69017620	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347161, intron 4 of 10)	intron (NM_001347161, intron 4 of 10)	-118680.0	NM_181547	329416.0	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	5.72	9.68	4.62	4.05	4.67	12.06	8.45	5.31	2.5
Merged-chr4-3699511-1	chr4	3699011	3700011	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	intron (NM_001111096, intron 1 of 12)	-15453.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	34.32	49.3	51.8	35.76	33.12	59.48	40.14	59.69	49.34
Merged-chr12-40473851-1	chr12	40473351	40474351	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	27798.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	13.73	20.27	25.9	17.54	14.93	21.7	17.96	12.38	13.12
Merged-chr15-97871250-1	chr15	97870750	97871750	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 4 of 9)	intron (NM_009504, intron 4 of 9)	-26748.0	NM_001204278	56233.0	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	4.58	1.38	3.7	5.4	2.33	1.61	3.17	2.21	0.0
Merged-chr9-21989851-1	chr9	21989351	21990351	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023622)	promoter-TSS (NM_023622)	-398.0	NM_023622	71746.0	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	6.86	7.83	10.17	10.8	5.13	15.27	8.45	7.96	10.62
Merged-chr3-9500900-1	chr3	9500400	9501400	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	97822.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	2.86	1.38	0.0	8.77	4.67	1.61	2.11	3.1	1.25
Merged-chr12-84061083-1	chr12	84060583	84061583	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001346701)	TTS (NM_001346701)	-8241.0	NM_001347417	217698.0	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	1.14	5.07	0.0	10.12	1.87	4.82	3.17	1.33	0.62
Merged-chr17-31492644-1	chr17	31492144	31493144	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	19843.0	NM_021322	57773.0	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik|Wh	WD repeat domain 4	protein-coding	6.86	2.76	3.7	0.67	0.93	2.41	3.17	2.21	4.37
Merged-chr6-50160053-1	chr6	50159553	50160553	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 4 of 13)	intron (NM_001361248, intron 4 of 13)	49193.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	4.0	4.15	5.55	8.77	6.53	8.84	5.28	4.42	13.74
Merged-chr18-67931951-1	chr18	67931451	67932451	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NM_172631	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	5.15	4.15	19.42	6.07	2.8	2.41	3.17	5.75	6.25
Merged-chr11-29796805-1	chr11	29796305	29797305	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146016, intron 21 of 41)	RodERV21-int|LTR|ERV1	28863.0	NM_176829	216622.0	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	7.44	2.3	10.17	10.8	5.13	12.06	9.51	2.21	5.62
Merged-chr7-141294869-1	chr7	141294369	141295369	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007878, exon 4 of 4)	3' UTR (NM_007878, exon 4 of 4)	2863.0	NM_007878	13491.0	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	1.72	1.84	5.55	6.07	1.87	3.22	9.51	2.21	1.87
Merged-chr1-80627003-2	chr1	80626496	80627496	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 3 of 55)	intron (NM_175291, intron 3 of 55)	38356.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	9.72	13.82	5.55	11.47	16.33	15.27	14.79	3.98	12.49
Merged-chr1-127322449-1	chr1	127321949	127322949	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145128, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	117463.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	8.58	7.83	8.32	8.1	11.2	6.43	6.34	7.96	3.75
Merged-chr7-63906676-1	chr7	63906176	63907176	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	Lx8|LINE|L1	-10181.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	101.25	103.22	73.07	115.38	97.97	68.32	129.91	131.77	75.57
Merged-chr7-123205498-1	chr7	123204998	123205998	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9368.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	2.29	5.53	1.85	6.07	7.0	8.84	4.22	4.42	2.5
Merged-chr2-16111353-1	chr2	16110853	16111853	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310455, intron 32 of 38)	RLTR26_Mus|LTR|ERVK	-244951.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	1.72	0.92	1.85	0.67	2.8	4.02	2.11	1.77	1.25
Merged-chr12-102702704-1	chr12	102702204	102703204	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	2165.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	41.19	25.34	46.25	26.31	20.06	28.13	35.91	31.39	27.48
Merged-chr5-23908845-1	chr5	23908345	23909345	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56612.0	NR_028536	100217436.0		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	3.43	2.76	0.0	10.12	7.0	8.04	1.06	0.44	5.0
Merged-chr19-55662331-1	chr19	55661831	55662831	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	39873.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	13.73	7.37	14.8	6.75	5.13	10.45	10.56	4.86	8.74
Merged-chr16-32333367-1	chr16	32332867	32333867	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177633, intron 1 of 10)	UCON11|Unknown|Unknown	1115.0	NM_177633	224111.0	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	45.76	29.49	44.4	38.46	31.72	47.42	55.98	48.2	32.48
Merged-chr13-3908401-1	chr13	3907901	3908901	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019671, intron 2 of 11)	intron (NM_019671, intron 2 of 11)	9819.0	NM_019671	56349.0	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	5.72	1.84	5.55	1.35	1.4	3.22	4.22	1.77	1.25
Merged-chr11-16623832-1	chr11	16623332	16624332	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-115348.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	1.14	2.3	1.85	2.02	1.87	4.82	1.06	2.65	0.0
Merged-chr1-93576305-1	chr1	93575805	93576805	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145519, intron 9 of 26)	intron (NM_145519, intron 9 of 26)	59422.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	9.72	17.51	12.95	12.14	4.67	2.41	13.73	9.29	15.61
Merged-chr19-16009414-1	chr19	16008914	16009914	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	MTD|LTR|ERVL-MaLR	24339.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	20.02	25.34	37.0	13.49	23.33	24.11	36.97	34.49	37.47
Merged-chr6-128736326-1	chr6	128735826	128736826	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13280.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	3.43	1.84	1.85	3.37	1.87	4.82	4.22	4.86	6.25
Merged-chr6-90607400-1	chr6	90606900	90607900	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027868, intron 1 of 10)	intron (NM_027868, intron 1 of 10)	2520.0	NM_027868	71699.0	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	5.15	4.61	5.55	4.05	2.33	4.02	6.34	0.88	2.5
Merged-chr10-99166634-1	chr10	99166134	99167134	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	58499.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	20.02	15.21	9.25	16.19	15.86	12.86	14.79	17.69	16.24
Merged-chr15-4000773-1	chr15	4000273	4001273	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045740, intron 2 of 2)	L1MD2|LINE|L1	4734.0	NR_045740	328489.0	Mm.447020	NR_045740	ENSMUSG00000097662	Gm2093	100039196|A630020A06	predicted gene 2093	ncRNA	2.86	6.45	4.62	2.02	4.2	1.61	6.34	3.98	1.25
Merged-chr1-165735020-1	chr1	165734520	165735520	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26926.0	NM_178593	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	36.61	22.58	25.9	64.1	16.33	30.54	54.92	34.93	27.48
Merged-chr11-109471523-1	chr11	109471023	109472023	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029842, intron 1 of 5)	intron (NM_001029842, intron 1 of 5)	1706.0	NM_134038	104681.0	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	73.22	48.38	30.52	64.1	46.65	57.87	98.23	92.86	26.85
Merged-chr17-86249549-1	chr17	86249049	86250049	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	37629.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.29	1.38	3.7	2.02	5.13	4.82	4.22	0.44	3.75
Merged-chr5-21328765-1	chr5	21328265	21329265	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 4 of 18)	intron (NM_029195, intron 4 of 18)	-43908.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	15.45	8.75	31.45	7.42	7.46	8.04	23.24	18.57	8.74
Merged-chr13-118478562-1	chr13	118478062	118479062	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77606.0	NR_045982	75890.0	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	1.14	0.92	2.77	1.35	2.8	1.61	1.06	4.86	1.25
Merged-chr5-74961318-2	chr5	74960815	74961815	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045866, intron 2 of 4)	intron (NR_045866, intron 2 of 4)	12121.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	2.29	2.76	1.85	3.37	1.4	2.41	2.11	7.07	4.37
Merged-chr2-163590336-1	chr2	163589836	163590836	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	6.86	1.38	11.1	12.14	3.73	6.43	5.28	2.21	1.87
Merged-chr8-39426913-1	chr8	39426413	39427413	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	128933.0	NR_044988	621335.0	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	9.15	12.9	3.7	19.57	17.26	16.88	1.06	3.54	0.0
Merged-chr13-119488969-1	chr13	119488469	119489469	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	109.0	NM_001177666	633640.0	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	30.32	14.75	12.95	27.66	29.86	16.88	26.4	20.34	34.97
Merged-chr1-173673634-1	chr1	173673134	173674134	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162938)	promoter-TSS (NM_001162938)	-46.0	NM_001162938	100033459.0	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|NG2creBAC|Pydc3|Pyr-rv1|Tg(Cspg4-cre)1Akik	interferon activated gene 208	protein-coding	2.86	1.38	0.0	39.81	39.65	40.19	24.29	19.46	27.48
Merged-chr2-79774610-2	chr2	79774113	79775113	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 4 of 4)	intron (NM_001290743, intron 4 of 4)	66833.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	5.72	2.76	0.0	5.4	7.0	6.43	2.11	4.86	3.75
Merged-chr1-127225876-1	chr1	127225376	127226376	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 1 of 17)	intron (NM_145128, intron 1 of 17)	20890.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	69.79	41.01	44.4	64.77	49.45	70.73	62.31	51.73	39.97
Merged-chr15-65810952-1	chr15	65810452	65811452	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133766, intron 1 of 22)	intron (NM_133766, intron 1 of 22)	23932.0	NM_001356582	76740.0	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	15.45	12.9	8.32	14.17	8.4	12.86	10.56	11.5	17.49
Merged-chr16-29561080-1	chr16	29560580	29561580	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16216.0	NM_001164613	224079.0	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	5.72	1.38	0.0	4.72	2.8	1.61	4.22	1.33	4.37
Merged-chr17-28716312-1	chr17	28715812	28716812	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	MTE2a|LTR|ERVL-MaLR	23744.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	9.15	7.83	3.7	9.45	4.2	8.04	8.45	4.42	12.49
Merged-chr1-54911611-1	chr1	54911111	54912111	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	14776.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	17.16	32.25	20.35	37.11	20.06	14.47	15.84	15.03	20.61
Merged-chr10-81016828-3	chr10	81016356	81017356	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1931.0	NM_010319	14708.0	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	1.14	0.92	0.0	7.42	2.33	1.61	0.0	1.33	1.25
Merged-chr8-127979570-1	chr8	127979070	127980070	+	640.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	298655.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	11.44	11.98	15.72	3.37	8.4	10.45	19.01	8.4	15.61
Merged-chr10-128343703-1	chr10	128343203	128344203	+	640.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026444, intron 1 of 10)	intron (NM_026444, intron 1 of 10)	5976.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	28.03	28.57	29.6	26.99	20.53	35.37	39.08	47.75	43.09
Merged-chr7-132304539-1	chr7	132304039	132305039	+	640.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	intron (NM_029935, intron 1 of 7)	-11125.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	44.62	41.47	46.25	35.09	28.92	46.62	29.57	30.51	23.73
Merged-chr10-79874530-2	chr10	79874017	79875017	+	639.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033210, exon 1 of 6)	non-coding (NR_033210, exon 1 of 6)	117.0	NM_181681	216152.0	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	3.43	5.53	11.1	10.12	6.53	8.04	5.28	0.88	5.62
Merged-chr11-46813372-2	chr11	46812875	46813875	+	639.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178759, intron 1 of 8)	B3|SINE|B2	2576.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	90.38	142.84	80.47	103.91	96.57	100.47	137.3	157.41	56.21
Merged-chr7-45621657-2	chr7	45621116	45622116	+	639.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001018013)	promoter-TSS (NM_001018013)	-195.0	NM_001018013	73456.0	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	13.73	10.6	5.55	12.14	6.06	8.04	9.51	7.07	6.25
Merged-chr8-117577270-1	chr8	117576770	117577770	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 9 of 32)	ORR1E|LTR|ERVL-MaLR	78995.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	3.43	4.61	7.4	7.42	4.67	4.82	8.45	5.31	19.98
Merged-chr4-119005163-3	chr4	119004672	119005672	+	639.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43205.0	NM_133892	100470.0	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	4.0	7.37	5.55	1.35	1.87	4.02	12.67	8.4	1.25
Merged-chr10-82696728-3	chr10	82696268	82697268	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2239.0	NM_001081218	67933.0	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838|fkls	host cell factor C2	protein-coding	32.04	13.36	14.8	13.49	12.6	20.9	30.63	22.99	5.62
Merged-chr5-120102959-3	chr5	120102461	120103461	+	639.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13552.0	NM_028762	74111.0	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	2.29	0.92	0.0	2.7	4.2	1.61	3.17	0.0	5.0
Merged-chr11-121652664-1	chr11	121652164	121653164	+	639.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	20487.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	9.15	2.76	1.85	6.75	5.13	0.0	5.28	5.75	8.12
Merged-chr5-146810845-2	chr5	146810353	146811353	+	639.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15897.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	42.9	59.9	60.12	66.12	58.78	56.27	80.27	99.93	41.22
Merged-chr11-87073487-2	chr11	87073003	87074003	+	639.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025638, intron 1 of 9)	intron (NM_025638, intron 1 of 9)	634.0	NM_025638	66569.0	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	10.87	5.07	7.4	27.66	26.12	36.97	32.74	12.38	11.24
Merged-chr12-85608246-3	chr12	85607745	85608745	+	639.583313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030887, exon 2 of 4)	exon (NM_030887, exon 2 of 4)	8227.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.58	4.61	16.65	10.12	2.8	11.25	9.51	6.63	8.12
Merged-chr17-56298622-3	chr17	56298115	56299115	+	639.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029799, intron 1 of 2)	B2_Mm2|SINE|B2	1671.0	NM_029799	76920.0	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	6.86	8.29	4.62	6.07	7.93	3.22	12.67	6.19	8.12
Merged-chr18-66469469-1	chr18	66468969	66469969	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	10865.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	7.44	10.6	4.62	23.62	10.26	14.47	19.01	15.48	9.99
Merged-chr2-79265839-2	chr2	79265348	79266348	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010576, intron 2 of 27)	intron (NM_010576, intron 2 of 27)	10422.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	11.44	6.91	1.85	7.42	6.06	4.02	4.22	4.86	5.0
Merged-chr8-123323618-2	chr8	123323118	123324118	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5042.0	NM_016925	14087.0	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	5.15	3.23	1.85	1.35	0.47	9.65	2.11	2.65	3.75
Merged-chr5-5275550-2	chr5	5275058	5276058	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-9490.0	NM_001310448	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	8.01	4.15	0.0	4.72	3.73	3.22	5.28	3.54	3.75
Merged-chr13-93240988-3	chr13	93240475	93241475	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48558.0	NM_001361537	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	94.39	98.61	92.5	67.47	58.78	54.66	103.51	105.24	61.83
Merged-chr11-97841236-2	chr11	97840741	97841741	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080935, intron 1 of 2)	intron (NM_001080935, intron 1 of 2)	461.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	13.16	7.83	11.1	7.42	5.6	4.82	30.63	22.99	6.25
Merged-chr10-75954605-2	chr10	75954098	75955098	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198635)	promoter-TSS (NM_198635)	84.0	NM_198635	333669.0	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	6.29	3.69	1.85	2.02	2.33	7.23	1.06	6.19	6.25
Merged-chr14-54482713-2	chr14	54482213	54483213	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	6613.0	NM_080726	140743.0	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.57	2.3	0.0	4.05	3.27	0.0	4.22	2.21	1.25
Merged-chr16-31024497-2	chr16	31023987	31024987	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	56945.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	7.44	10.6	7.4	14.84	9.33	8.84	11.62	8.4	8.74
Merged-chr19-57079757-2	chr19	57079254	57080254	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178688, intron 8 of 24)	intron (NM_178688, intron 8 of 24)	39270.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	8.01	6.45	3.7	2.7	4.67	1.61	3.17	4.42	5.0
Merged-chr3-97338954-2	chr3	97338437	97339437	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	72242.0	NM_146275	258272.0	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	4.58	3.23	0.92	2.02	2.33	0.0	0.0	0.0	5.0
Merged-chr12-100538613-2	chr12	100538123	100539123	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17801.0	NM_001033213	104718.0	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	4.58	6.45	5.55	5.4	6.53	8.04	13.73	5.31	3.75
Merged-chr11-96314927-1	chr11	96314427	96315427	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2238.0	NR_029784	723893.0		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	18.31	28.11	10.17	20.24	33.12	53.85	45.42	33.6	24.36
Merged-chr5-147435537-1	chr5	147435037	147436037	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	5381.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	21.17	28.57	33.3	16.19	22.86	27.33	14.79	17.24	11.24
Merged-chr7-44753010-3	chr7	44752512	44753512	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133945, intron 2 of 14)	ORR1E|LTR|ERVL-MaLR	4383.0	NM_133945	101568.0	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	9.72	18.89	25.9	8.77	11.2	24.11	13.73	7.52	12.49
Merged-chr1-16621357-2	chr1	16620861	16621861	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2023.0	NM_001271017	66799.0	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	4.0	11.52	5.55	7.42	8.86	14.47	7.39	3.1	8.74
Merged-chr6-134266946-1	chr6	134266446	134267446	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007961, exon 8 of 8)	3' UTR (NM_007961, exon 8 of 8)	-129383.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	14.3	16.13	12.95	19.57	8.4	20.09	4.22	1.33	1.25
Merged-chr18-46430426-2	chr18	46429924	46430924	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35392.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	4.0	2.76	4.62	5.4	1.87	2.41	6.34	4.86	5.0
Merged-chr10-60757217-2	chr10	60756723	60757723	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.57	5.99	1.85	2.02	0.93	8.04	0.0	0.44	1.25
Merged-chr1-134561202-2	chr1	134560692	134561692	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152895, intron 1 of 26)	CpG	1014.0	NM_152895	75605.0	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	14.87	5.99	9.25	21.59	11.2	12.06	22.18	7.07	11.24
Merged-chr14-67935599-2	chr14	67935118	67936118	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2046.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	7.44	2.3	3.7	5.4	4.2	8.84	8.45	1.77	3.12
Merged-chr1-171841545-1	chr1	171841045	171842045	+	639.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	L1_Mur3|LINE|L1	1848.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	159.6	211.5	118.39	165.31	180.07	118.96	286.23	334.28	120.53
Merged-chr7-126585699-3	chr7	126585205	126586205	+	639.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	112.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	84.09	111.51	111.92	87.04	63.91	88.42	80.27	63.23	55.58
Merged-chr6-17646217-2	chr6	17645715	17646715	+	639.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007604, intron 1 of 9)	intron (NM_007604, intron 1 of 9)	9205.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	20.02	36.4	36.07	24.96	21.93	25.72	33.8	30.51	34.97
Merged-chr17-48198599-2	chr17	48198097	48199097	+	639.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31340.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	2.29	2.76	1.85	4.05	1.4	1.61	6.34	2.65	3.75
Merged-chr13-94058036-2	chr13	94057541	94058541	+	639.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	CpG	245.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	2.86	1.38	1.85	4.72	6.06	3.22	8.45	3.98	6.25
Merged-chr5-125330304-1	chr5	125329804	125330804	+	639.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	10790.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	35.47	43.77	54.57	45.21	44.32	57.07	68.65	55.71	44.97
Merged-chr14-14348929-3	chr14	14348452	14349452	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008369, intron 4 of 11)	intron (NM_008369, intron 4 of 11)	2457.0	NM_008369	16188.0	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	43.48	53.91	31.45	32.39	11.2	36.17	46.47	36.26	24.98
Merged-chr3-86224764-3	chr3	86224245	86225245	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_030695)	promoter-TSS (NM_030695)	55.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	14.87	9.68	4.62	25.64	15.86	17.68	4.22	5.75	5.0
Merged-chr9-111295517-1	chr9	111295017	111296017	+	639.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-16222.0	NM_001164659	320429.0	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	1.72	1.84	5.55	0.0	0.47	0.0	4.22	0.44	2.5
Merged-chr6-135249946-3	chr6	135249456	135250456	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	-2072.0	NM_001080552	14840.0	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	2.29	2.3	0.0	4.72	4.2	2.41	3.17	0.44	3.75
Merged-chr1-128723898-1	chr1	128723398	128724398	+	639.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-131599.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	101.25	78.33	32.37	109.98	75.57	81.18	49.64	53.94	39.97
Merged-chr2-167257359-3	chr2	167256860	167257860	+	639.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-16823.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	17.16	23.04	32.37	26.31	16.33	25.72	26.4	26.97	17.49
Merged-chr4-111328219-2	chr4	111327724	111328724	+	639.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284190, intron 5 of 12)	intron (NM_001284190, intron 5 of 12)	-86782.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.0	5.53	9.25	6.07	4.2	2.41	1.06	3.98	5.0
Merged-chr1-105748527-1	chr1	105748027	105749027	+	639.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173187, intron 26 of 28)	intron (NM_173187, intron 26 of 28)	-32196.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	8.58	20.74	30.52	22.27	11.2	17.68	12.67	18.13	13.74
Merged-chr15-36167881-3	chr15	36167374	36168374	+	639.200012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2990.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	3.43	4.15	0.0	2.7	1.87	0.8	1.06	4.42	2.5
Merged-chr10-17344035-2	chr10	17343535	17344535	+	639.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-248253.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.0	4.61	1.85	2.7	2.33	3.22	4.22	0.88	5.0
Merged-chr7-28972874-3	chr7	28972354	28973354	+	639.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028659, intron 6 of 7)	intron (NM_028659, intron 6 of 7)	9034.0	NM_001285943	73830.0	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	7.44	6.45	7.4	10.8	7.0	4.82	2.11	3.98	1.87
Merged-chr16-32179646-3	chr16	32179125	32180125	+	639.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033539)	promoter-TSS (NM_001033539)	-175.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	21.17	21.2	27.75	14.84	8.86	8.04	10.56	15.03	17.49
Merged-chr10-127229096-3	chr10	127228606	127229606	+	639.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008447)	TTS (NM_008447)	-17484.0	NM_001359280	117150.0	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	1.14	0.92	1.85	1.35	3.27	1.61	4.22	1.33	1.25
Merged-chr11-98747516-3	chr11	98746981	98747981	+	639.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5696.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	29.75	25.34	18.5	34.41	22.39	30.54	51.75	39.35	24.36
Merged-chr2-31165163-3	chr2	31164666	31165666	+	639.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178760, intron 1 of 17)	L1MEd|LINE|L1	12850.0	NM_178760	277463.0	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	18.31	11.98	6.47	30.36	10.73	11.25	26.4	9.73	10.62
Merged-chr18-80220606-1	chr18	80220106	80221106	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025299, intron 3 of 3)	MLT1C-int|LTR|ERVL-MaLR	13739.0	NM_001042408	27366.0	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	30.32	22.58	22.2	24.96	17.73	29.74	1.06	0.44	11.87
Merged-chr11-35839152-1	chr11	35838652	35839652	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_170779)	TTS (NM_170779)	-4624.0	NM_025936	104458.0	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	14.3	16.59	7.4	21.59	34.99	20.9	23.24	18.13	7.49
Merged-chr6-72165887-1	chr6	72165387	72166387	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-42690.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	8.58	7.83	7.4	6.75	6.06	2.41	6.34	4.42	5.0
Merged-chr8-64849526-1	chr8	64849026	64850026	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178633, intron 1 of 14)	CpG	398.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	14.87	9.22	21.27	15.52	8.4	5.63	23.24	4.86	2.5
Merged-chr1-125427118-1	chr1	125426618	125427618	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205386, intron 2 of 12)	MTB_Mm|LTR|ERVL-MaLR	8609.0	NM_001205386	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	25.74	30.41	30.52	35.09	28.92	42.6	53.87	34.93	24.36
Merged-chr7-101873340-1	chr7	101872840	101873840	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-2552.0	NM_001252552	14275.0	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	10.87	12.9	18.5	16.87	9.33	14.47	15.84	12.82	23.73
Merged-chr7-99136337-1	chr7	99135837	99136837	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	MER21C|LTR|ERVL	4807.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	24.03	22.12	24.05	21.59	11.2	22.51	15.84	21.67	31.23
Merged-chr9-64020491-1	chr9	64019991	64020991	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008542, exon 1 of 4)	exon (NM_008542, exon 1 of 4)	1568.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	28.03	15.67	23.12	35.76	20.53	30.54	51.75	25.2	17.49
Merged-chr9-14501195-1	chr9	14500695	14501695	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173433)	promoter-TSS (NM_173433)	576.0	NM_023153	66070.0	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	121.85	146.07	123.02	118.08	140.89	143.07	149.98	110.1	94.93
Merged-chr12-84751821-1	chr12	84751321	84752321	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	21291.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	360.39	398.12	214.59	342.76	387.2	262.84	376.0	456.32	166.12
Merged-chr1-66701658-2	chr1	66701129	66702129	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001310642, exon 2 of 7)	exon (NM_001310642, exon 2 of 7)	798.0	NM_001310644	66646.0	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	30.89	38.71	25.9	45.21	76.04	64.3	67.6	58.81	36.22
Merged-chr13-93497115-1	chr13	93496615	93497615	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021310, intron 1 of 10)	intron (NM_021310, intron 1 of 10)	2693.0	NM_021310	57748.0	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	10.3	7.37	7.4	4.05	6.53	9.65	6.34	7.96	6.87
Merged-chr1-171579742-1	chr1	171579242	171580242	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018729, intron 6 of 8)	intron (NM_018729, intron 6 of 8)	20549.0	NM_018729	18106.0	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	5.72	11.98	0.92	14.17	7.0	13.66	7.39	3.54	8.74
Merged-chr10-43828594-1	chr10	43828094	43829094	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131055, intron 1 of 2)	RMER20C_Mm|LTR|ERVK	2687.0	NR_131055	71018.0	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	1.72	3.69	1.85	13.49	15.39	20.9	1.06	2.21	1.25
Merged-chr10-56751724-1	chr10	56751224	56752224	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	319743.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	5.72	8.75	7.4	8.77	3.73	12.06	4.22	3.98	6.25
Merged-chr2-118391400-1	chr2	118390900	118391900	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177806, intron 1 of 37)	intron (NM_001177806, intron 1 of 37)	2288.0	NM_001177806	27103.0	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	10.87	8.29	12.95	14.84	6.06	7.23	22.18	23.88	14.36
Merged-chr10-81341762-1	chr10	81341262	81342262	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148951, intron 1 of 5)	intron (NM_148951, intron 1 of 5)	1504.0	NM_148951	209047.0	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	10.3	0.92	4.62	4.72	0.93	7.23	0.0	0.0	5.0
Merged-chr11-101919834-1	chr11	101919334	101920334	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25480.0	NM_010791	17285.0	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	8.01	3.69	0.0	8.77	3.27	0.0	3.17	2.21	4.37
Merged-chr5-144277438-1	chr5	144276938	144277938	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040432, intron 1 of 2)	intron (NR_040432, intron 1 of 2)	377.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	4.58	1.38	5.55	4.72	2.33	6.43	4.22	3.1	3.75
Merged-chr16-12497251-1	chr16	12496751	12497751	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-314139.0	NR_040507	75493.0	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	2.86	2.3	0.0	5.4	5.6	6.43	3.17	5.31	10.62
Merged-chr16-57552924-2	chr16	57552382	57553382	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	3640.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	65.21	70.96	53.65	52.63	53.65	66.71	61.26	59.69	58.71
Merged-chr13-110972736-1	chr13	110972236	110973236	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68890.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	1.14	5.53	0.0	4.72	7.0	0.0	3.17	8.84	2.5
Merged-chr18-9509112-1	chr18	9508612	9509612	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCCTG)n|Simple_repeat|Simple_repeat	-58958.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	10.87	3.23	0.0	24.96	12.13	3.22	15.84	9.29	9.99
Merged-chr14-44146137-1	chr14	44145637	44146637	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	25234.0	NM_029131	74954.0	Mm.425904	NM_029131	ENSMUSG00000072595	4930503E14Rik	-	RIKEN cDNA 4930503E14 gene	protein-coding	2.86	2.76	3.7	4.05	3.73	0.0	4.22	2.21	3.75
Merged-chr15-67907225-2	chr15	67906698	67907698	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	351658.0	NR_152182	380993.0	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	14.87	11.06	12.02	16.19	14.46	16.88	27.46	18.57	11.24
Merged-chr5-124859636-1	chr5	124859136	124860136	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144819, intron 1 of 3)	intron (NM_144819, intron 1 of 3)	2585.0	NM_144819	215707.0	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	6.86	2.3	5.55	7.42	4.2	5.63	3.17	3.1	5.0
Merged-chr17-47743528-1	chr17	47743028	47744028	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	5597.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	8.58	7.37	12.02	12.82	10.73	14.47	6.34	6.19	4.37
Merged-chr3-65442417-1	chr3	65441917	65442917	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-49864.0	NM_026155	67437.0	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	10.3	7.37	4.62	20.24	11.2	9.65	12.67	15.92	2.5
Merged-chr9-95582312-1	chr9	95581812	95582812	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22495.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	9.72	7.37	7.4	14.84	11.66	5.63	9.51	12.82	8.74
Merged-chr5-33983893-1	chr5	33983393	33984393	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033458, exon 2 of 4)	exon (NM_001033458, exon 2 of 4)	460.0	NM_001310546	381633.0	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	2.86	1.84	0.92	5.4	5.13	3.22	2.11	0.88	0.0
Merged-chr4-47080831-1	chr4	47080331	47081331	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11122.0	NM_172693	230145.0	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	11.44	9.68	12.95	16.87	4.67	11.25	14.79	7.52	8.12
Merged-chr2-30132154-1	chr2	30131654	30132654	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1592.0	NM_146252	70296.0	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	28.6	32.25	32.37	28.34	20.53	36.17	59.15	54.39	29.98
Merged-chr7-28294675-1	chr7	28294175	28295175	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007866, exon 7 of 9)	exon (NM_007866, exon 7 of 9)	-3489.0	NM_175033	280621.0	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	1.14	0.0	5.55	0.0	0.93	1.61	1.06	0.88	1.25
Merged-chr1-167212478-1	chr1	167211978	167212978	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72649.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	1.14	2.76	1.85	1.35	3.27	1.61	6.34	0.0	3.75
Merged-chr7-46739193-1	chr7	46738693	46739693	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	3787.0	NM_001357493	20208.0	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	0.57	4.15	3.7	6.07	4.2	1.61	0.0	0.88	2.5
Merged-chr16-38106707-2	chr16	38106210	38107210	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-17450.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	14.87	23.5	25.9	23.62	18.66	31.35	30.63	26.09	20.61
Merged-chr18-60732178-1	chr18	60731678	60732678	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	L2b|LINE|L2	963.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	56.63	53.45	60.12	61.4	35.45	61.09	61.26	55.27	36.85
Merged-chr15-38289690-2	chr15	38289193	38290193	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10207.0	NM_001357677	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	86.95	107.36	57.35	103.91	85.37	106.9	124.63	151.66	101.8
Merged-chr9-77821103-1	chr9	77820603	77821603	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	66568.0	NM_010295	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	2.86	2.3	1.85	2.02	6.06	7.23	8.45	3.98	2.5
Merged-chr9-45274358-1	chr9	45273858	45274858	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5209.0	NM_001324486	16154.0	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	76.66	57.6	33.3	78.27	49.92	52.25	51.75	60.13	28.1
Merged-chr9-108827653-2	chr9	108827166	108828166	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001359573, exon 1 of 36)	exon (NM_001359573, exon 1 of 36)	1621.0	NM_001359572	107934.0	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	2.29	1.84	3.7	6.07	3.27	8.04	6.34	3.54	2.5
Merged-chr15-36684916-1	chr15	36684416	36685416	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75943.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	14.3	9.22	13.87	14.84	0.93	3.22	10.56	13.27	6.25
Merged-chr13-60608632-1	chr13	60608132	60609132	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1E|LTR|ERVL-MaLR	6421.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	14.87	17.51	35.15	8.1	5.6	20.9	9.51	7.96	3.12
Merged-chr7-84604742-1	chr7	84604242	84605242	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010176, intron 1 of 13)	intron (NM_010176, intron 1 of 13)	1200.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	12.59	2.76	0.0	8.1	6.06	6.43	3.17	1.77	5.0
Merged-chr2-163048145-1	chr2	163047645	163048645	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6490.0	NM_008652	17865.0	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	2.29	2.76	12.02	6.07	1.87	7.23	2.11	0.88	5.0
Merged-chr5-138683999-1	chr5	138683499	138684499	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	61140.0	NM_183025	243308.0	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	49.77	42.85	18.5	51.95	63.45	69.13	57.03	38.47	43.72
Merged-chr17-34108475-1	chr17	34107975	34108975	+	639.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11425.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	11.44	19.35	16.65	5.4	4.2	10.45	13.73	4.42	13.12
Merged-chr12-99306452-1	chr12	99305952	99306952	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	143622.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	30.89	11.98	1.85	16.87	10.26	9.65	6.34	8.4	0.0
Merged-chr4-133929457-1	chr4	133928957	133929957	+	639.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	38534.0	NM_016957	15331.0	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	35.47	27.65	22.2	38.46	29.39	34.56	53.87	50.85	51.84
Merged-chr17-34970034-1	chr17	34969534	34970534	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	2122.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	7.44	2.76	3.7	5.4	6.06	0.0	1.06	0.44	1.25
Merged-chr2-30469914-1	chr2	30469414	30470414	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4285.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	6.29	1.84	5.55	10.12	3.27	0.0	9.51	2.65	1.25
Merged-chr1-191421810-2	chr1	191421350	191422350	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24809.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	15.45	10.14	2.77	8.77	7.0	8.04	28.52	12.82	15.61
Merged-chr11-31948123-1	chr11	31947623	31948623	+	639.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17510.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	7.44	4.15	12.95	3.37	0.47	4.82	6.34	4.42	2.5
Merged-chr4-142005554-2	chr4	142005041	142006041	+	638.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 1 of 31)	intron (NM_177868, intron 1 of 31)	6110.0	NM_177868	329977.0	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding	6.86	2.3	6.47	5.4	3.73	3.22	3.17	1.77	1.25
Merged-chr11-76088651-3	chr11	76088159	76089159	+	638.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026664, intron 13 of 21)	intron (NM_026664, intron 13 of 21)	-60877.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	2.86	4.15	7.4	5.4	4.2	9.65	4.22	2.21	1.87
Merged-chr8-95887863-2	chr8	95887339	95888339	+	638.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010325, intron 1 of 9)	intron (NM_010325, intron 1 of 9)	526.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	42.9	43.77	37.92	47.23	43.85	33.76	68.65	56.6	26.85
Merged-chr16-10489760-2	chr16	10489234	10490234	+	638.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001243761)	promoter-TSS (NM_001243761)	-47.0	NM_001243761	12265.0	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	37.18	30.41	32.37	23.62	27.06	40.99	53.87	43.77	62.45
Merged-chr15-76818712-3	chr15	76818242	76819242	+	638.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001168288)	promoter-TSS (NM_001168288)	-572.0	NM_198420	223666.0	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	58.92	53.91	17.57	52.63	57.85	33.76	36.97	45.99	10.62
Merged-chr7-67227383-5	chr7	67226903	67227903	+	638.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_175215, exon 3 of 3)	3' UTR (NM_175215, exon 3 of 3)	4787.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	10.87	4.15	7.4	8.77	2.8	7.23	4.22	3.98	3.75
Merged-chr9-40241521-3	chr9	40240955	40241955	+	638.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27761.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	10.3	8.29	3.7	8.77	8.4	13.66	26.4	19.9	11.87
Merged-chr17-87143306-2	chr17	87142812	87143812	+	638.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35633.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	5.72	12.44	12.95	13.49	9.33	7.23	2.11	2.65	7.49
Merged-chr17-63430547-2	chr17	63430052	63431052	+	638.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	MTEa|LTR|ERVL-MaLR	70028.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	4.0	6.45	12.95	4.72	4.2	9.65	4.22	1.33	5.0
Merged-chr7-130762787-1	chr7	130762287	130763287	+	638.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11282.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.29	2.3	0.0	3.37	2.33	3.22	1.06	1.77	2.5
Merged-chr2-58163623-1	chr2	58163123	58164123	+	638.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045895)	promoter-TSS (NR_045895)	-351.0	NR_045896	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	4.58	3.69	5.55	4.72	5.13	6.43	3.17	5.75	5.0
Merged-chr5-151344970-3	chr5	151344472	151345472	+	638.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23703.0	NR_045700	625175.0	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	3.43	2.3	9.25	6.07	3.73	5.63	9.51	5.75	6.87
Merged-chr17-27643347-2	chr17	27642846	27643846	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8104.0	NM_025963	67097.0	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	5.72	5.99	9.25	4.05	6.06	4.02	4.22	4.42	8.12
Merged-chr11-113437584-1	chr11	113437084	113438084	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	128231.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	1.72	0.92	0.0	3.37	0.93	2.41	2.11	0.44	5.0
Merged-chr17-33997983-1	chr17	33997483	33998483	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001001892, intron 3 of 7)	intron (NM_001001892, intron 3 of 7)	2350.0	NM_001001892	14972.0	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	25.74	12.44	20.35	10.8	5.13	8.04	16.9	15.48	17.49
Merged-chr18-61938451-1	chr18	61937951	61938951	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14624.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.72	4.15	1.85	0.0	3.27	0.0	0.0	0.88	1.25
Merged-chr1-139424087-2	chr1	139423590	139424590	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172643, exon 2 of 11)	exon (NM_172643, exon 2 of 11)	1707.0	NM_172643	226470.0	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	7.44	8.75	5.55	10.12	5.6	0.0	7.39	3.54	3.75
Merged-chr16-94269827-2	chr16	94269315	94270315	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 2 of 10)	intron (NM_001360045, intron 2 of 10)	20476.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	4.0	2.3	4.62	4.05	2.33	5.63	2.11	0.88	3.75
Merged-chr1-92935888-2	chr1	92935393	92936393	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015525, intron 1 of 1)	intron (NR_015525, intron 1 of 1)	1485.0	NM_011796	23830.0	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	3.43	4.61	12.95	4.72	2.8	3.22	5.28	3.98	8.12
Merged-chr3-54360369-2	chr3	54359891	54360891	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001198766)	promoter-TSS (NM_001198766)	-716.0	NM_001198766	50706.0	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	33.18	50.69	34.22	11.47	14.0	24.11	23.24	28.74	20.61
Merged-chr5-100671578-2	chr5	100671077	100672077	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027978, intron 1 of 6)	intron (NM_027978, intron 1 of 6)	2679.0	NM_027978	71883.0	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	5.15	5.07	9.25	2.7	4.2	3.22	2.11	3.1	5.62
Merged-chr17-24758291-1	chr17	24757791	24758791	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357340, exon 3 of 3)	exon (NM_001357340, exon 3 of 3)	5303.0	NM_001357340	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	3.43	3.23	3.7	2.02	0.93	1.61	3.17	0.44	1.25
Merged-chr9-65557183-2	chr9	65556665	65557665	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153119, intron 5 of 5)	intron (NM_153119, intron 5 of 5)	22922.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	14.87	22.58	52.72	15.52	7.0	28.94	17.96	11.94	13.74
Merged-chr16-27457483-2	chr16	27456977	27457977	+	638.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	68521.0	NM_001289436	67501.0	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	1.72	1.84	3.7	9.45	3.73	0.0	6.34	3.54	3.12
Merged-chr16-44833330-1	chr16	44832830	44833830	+	638.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_207244, exon 4 of 6)	exon (NM_207244, exon 4 of 6)	12602.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	8.58	6.91	7.4	4.05	4.67	4.82	8.45	5.31	1.87
Merged-chr9-50584830-1	chr9	50584330	50585330	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	19019.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	6.86	0.92	10.17	6.07	7.93	6.43	6.34	4.42	3.12
Merged-chr11-75071520-1	chr11	75071020	75072020	+	638.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	B3|SINE|B2	-5529.0	NR_030454	735274.0		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	28.03	6.91	7.4	13.49	9.33	15.27	6.34	5.31	8.74
Merged-chr9-66542926-3	chr9	66542446	66543446	+	638.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144937, intron 6 of 14)	ID_B1|SINE|B4	-28353.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	7.44	19.81	12.95	14.84	7.46	26.53	11.62	8.84	9.99
Merged-chr5-34773581-3	chr5	34773058	34774058	+	638.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	RMER1B|Other|Other	11818.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	8.01	7.83	16.65	14.84	6.53	8.84	6.34	5.75	9.99
Merged-chr8-95067722-2	chr8	95067199	95068199	+	638.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042715, intron 7 of 17)	intron (NM_001042715, intron 7 of 17)	12596.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	5.15	1.84	0.0	4.72	2.33	0.8	6.34	1.77	2.5
Merged-chr4-119806745-2	chr4	119806252	119807252	+	638.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-7926.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	20.59	18.43	12.95	3.37	4.67	8.04	9.51	5.31	8.74
Merged-chr7-46845177-3	chr7	46844641	46845641	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_102727)	promoter-TSS (NR_102727)	-663.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	44.62	51.15	50.87	56.68	63.45	89.22	86.61	78.71	58.71
Merged-chr11-100816298-3	chr11	100815796	100816796	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	6274.0	NM_011489	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	19.45	22.12	23.12	29.69	14.0	25.72	22.18	12.82	26.23
Merged-chr4-9780368-3	chr4	9779869	9780869	+	638.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030693, intron 1 of 3)	intron (NR_030693, intron 1 of 3)	9784.0	NR_030693	320152.0	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	4.58	3.23	3.7	2.7	1.4	2.41	2.11	1.33	1.25
Merged-chr14-66953308-1	chr14	66952808	66953808	+	638.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42100.0	NM_175498	239157.0	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	6.29	0.92	5.55	2.02	1.4	0.8	5.28	0.44	1.25
Merged-chr9-50443936-3	chr9	50443481	50444481	+	638.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50544.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	4.0	3.69	7.4	4.72	3.27	2.41	9.51	0.88	1.25
Merged-chr15-7226441-2	chr15	7225936	7226936	+	638.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289496, intron 17 of 22)	intron (NM_001289496, intron 17 of 22)	85894.0	NM_013584	16880.0	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.43	5.53	1.85	8.77	0.93	3.22	6.34	3.1	2.5
Merged-chr5-28294183-2	chr5	28293674	28294674	+	638.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23015.0	NM_028234	381626.0	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	2.29	4.15	5.55	3.37	3.73	2.41	2.11	0.88	0.0
Merged-chr5-151086582-2	chr5	151086069	151087069	+	638.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153382, intron 3 of 13)	intron (NR_153382, intron 3 of 13)	103624.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	7.44	4.61	1.85	2.7	5.6	4.02	5.28	1.77	2.5
Merged-chr12-12247279-3	chr12	12246801	12247801	+	638.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-14838.0	NM_029758	76820.0	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	31.46	37.78	32.37	24.29	23.79	32.15	53.87	55.71	26.23
Merged-chr2-24315645-3	chr2	24315136	24316136	+	638.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-21224.0	NM_031167	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	7.44	5.99	15.72	6.75	11.66	16.08	1.06	2.65	3.75
Merged-chr3-94891514-3	chr3	94891022	94892022	+	638.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-4564.0	NM_008945	19172.0	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	6.86	13.36	5.55	8.1	6.53	8.04	7.39	9.73	13.74
Merged-chr1-168362664-2	chr1	168362168	168363168	+	638.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	69501.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	4.0	3.23	6.47	3.37	5.6	8.84	3.17	0.88	3.12
Merged-chr7-126694740-1	chr7	126694240	126695240	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029420, intron 1 of 5)	MTC|LTR|ERVL-MaLR	1043.0	NM_029420	75764.0	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	18.88	10.14	6.47	14.17	12.6	16.08	16.9	11.94	9.99
Merged-chr5-123699373-1	chr5	123698873	123699873	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027494, exon 14 of 14)	3' UTR (NM_027494, exon 14 of 14)	-15012.0	NM_001359222	56430.0	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	8.58	5.07	5.55	8.77	4.2	7.23	5.28	3.1	3.75
Merged-chr9-114793537-1	chr9	114793037	114794037	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-11544.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	9.15	9.22	10.17	5.4	7.0	15.27	27.46	30.07	6.87
Merged-chr7-35584755-1	chr7	35584255	35585255	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145840, exon 1 of 1)	exon (NM_145840, exon 1 of 1)	827.0	NM_145840	243923.0	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	5.72	2.3	0.0	3.37	4.67	1.61	4.22	0.0	0.62
Merged-chr1-143996827-1	chr1	143996327	143997327	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7322.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	23.45	8.29	6.47	4.72	4.2	4.82	5.28	9.73	16.24
Merged-chr7-19077313-1	chr7	19076813	19077813	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010058, intron 1 of 4)	intron (NM_010058, intron 1 of 4)	1113.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	18.31	23.04	17.57	13.49	7.46	20.09	172.16	147.68	76.82
Merged-chr10-128806964-1	chr10	128806464	128807464	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001359824, exon 2 of 7)	exon (NM_001359824, exon 2 of 7)	1288.0	NM_001359824	74330.0	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	30.32	19.35	42.55	33.06	17.26	36.97	28.52	22.99	21.23
Merged-chr2-38512330-1	chr2	38511830	38512830	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159631, intron 1 of 9)	intron (NM_001159631, intron 1 of 9)	454.0	NM_001159631	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	25.17	14.28	12.02	22.27	11.66	18.49	6.34	4.42	6.87
Merged-chr2-162999947-1	chr2	162999447	163000447	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013731, intron 10 of 13)	B3|SINE|B2	8532.0	NM_001291152	27219.0	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.57	5.53	1.85	0.67	1.4	0.0	1.06	3.1	0.0
Merged-chr13-44696258-1	chr13	44695758	44696758	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34516.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.29	1.84	4.62	4.72	0.93	4.02	1.06	2.21	6.87
Merged-chr15-84896408-1	chr15	84895908	84896908	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	-27020.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	1.72	4.15	6.47	7.42	3.27	12.86	7.39	6.19	2.5
Merged-chr13-34216815-1	chr13	34216315	34217315	+	638.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033167, intron 4 of 10)	MTC-int|LTR|ERVL-MaLR	53851.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.29	1.84	1.85	1.35	1.4	3.22	14.79	11.05	19.98
Merged-chr1-150404014-1	chr1	150403514	150404514	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133780, exon 7 of 52)	exon (NM_133780, exon 7 of 52)	-10934.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	30.32	33.64	31.45	22.94	29.39	22.51	54.92	46.87	34.35
Merged-chr5-64812242-1	chr5	64811742	64812742	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008453, intron 1 of 5)	intron (NM_008453, intron 1 of 5)	8719.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	173.9	193.07	152.62	161.26	145.55	194.52	143.64	178.64	82.44
Merged-chr5-90592855-1	chr5	90592355	90593355	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252661, intron 12 of 13)	intron (NM_001252661, intron 12 of 13)	31646.0	NM_001252661	622307.0	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	3.43	3.23	1.85	4.72	3.27	1.61	1.06	0.44	5.0
Merged-chr16-20716754-2	chr16	20716255	20717255	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009900)	promoter-TSS (NM_009900)	-119.0	NM_009900	12724.0	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	17.16	9.68	6.47	45.88	27.06	23.31	34.85	46.43	28.1
Merged-chr17-35700685-1	chr17	35700185	35701185	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001198833)	promoter-TSS (NM_001198833)	-95.0	NM_001198833	12305.0	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.0	0.46	0.0	4.05	0.47	2.41	4.22	1.33	2.5
Merged-chr3-135206870-1	chr3	135206370	135207370	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5693.0	NM_173762	229841.0	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	3.43	1.38	1.85	2.7	2.8	0.0	0.0	1.33	8.74
Merged-chr12-86833107-1	chr12	86832607	86833607	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51707.0	NM_145836	238330.0	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	54.35	33.64	27.75	79.62	54.58	66.71	53.87	30.51	31.23
Merged-chr8-36998732-1	chr8	36998232	36999232	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126063, intron 2 of 2)	ORR1F|LTR|ERVL-MaLR	5157.0	NM_001039220	621080.0	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	12.01	13.82	14.8	6.07	3.27	14.47	7.39	5.75	3.75
Merged-chr12-116202812-1	chr12	116202312	116203312	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60213.0	NM_146039	217935.0	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	1.14	2.3	1.85	6.75	3.27	3.22	1.06	2.21	5.0
Merged-chr7-126907968-1	chr7	126907468	126908468	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-9690.0	NM_028389	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	2.29	0.0	1.85	6.75	11.2	16.08	10.56	13.27	9.99
Merged-chr3-59262307-3	chr3	59261805	59262805	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177855, exon 34 of 44)	exon (NM_177855, exon 34 of 44)	680.0	NM_027571	70839.0	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	155.6	301.35	134.12	168.68	214.13	133.43	171.1	245.84	84.31
Merged-chr2-155099603-1	chr2	155099103	155100103	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040634, intron 1 of 2)	intron (NR_040634, intron 1 of 2)	476.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	29.17	17.97	35.15	16.19	12.6	18.49	39.08	54.83	31.23
Merged-chr1-59764770-3	chr1	59764243	59765243	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007561, intron 1 of 12)	intron (NM_007561, intron 1 of 12)	464.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	39.47	56.22	31.45	62.75	49.92	69.93	66.54	61.9	61.83
Merged-chr3-52404861-1	chr3	52404361	52405361	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112103.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	1.14	1.84	5.55	7.42	3.73	3.22	0.0	4.86	1.25
Merged-chr2-116980685-1	chr2	116980185	116981185	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80533.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	29.75	24.88	25.9	31.04	17.73	18.49	20.07	29.18	24.36
Merged-chr1-142894315-1	chr1	142893815	142894815	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-746382.0	NM_020025	26878.0	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	1.14	3.23	3.7	2.7	6.06	1.61	2.11	2.65	1.25
Merged-chr9-114787329-2	chr9	114786779	114787779	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5286.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	15.45	11.06	24.97	10.12	14.0	20.9	77.1	92.86	56.21
Merged-chr11-87010629-2	chr11	87010113	87011113	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16851.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	2.86	5.99	1.85	9.45	8.4	12.86	6.34	13.71	6.25
Merged-chr11-5730065-1	chr11	5729565	5730565	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077661, intron 1 of 5)	L1MC4|LINE|L1	11111.0	NM_001361590	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	14.87	24.88	29.6	14.84	16.79	4.82	35.91	19.9	18.11
Merged-chr18-25487593-1	chr18	25487093	25488093	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001362294, intron 10 of 12)	intron (NM_001362294, intron 10 of 12)	192155.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.86	4.61	1.85	11.47	7.93	13.66	6.34	3.1	5.0
Merged-chr10-71349009-1	chr10	71348509	71349509	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027184, intron 1 of 5)	intron (NM_027184, intron 1 of 5)	1246.0	NM_027184	69718.0	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	67.5	69.12	75.85	105.26	94.23	98.06	73.93	73.4	46.84
Merged-chr9-109124435-1	chr9	109123935	109124935	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28999.0	NM_172775	235611.0	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.0	1.38	0.0	0.0	2.33	4.82	1.06	3.54	2.5
Merged-chr16-58480224-1	chr16	58479724	58480724	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 6 of 10)	intron (NM_001357433, intron 6 of 10)	43202.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	30.32	28.57	15.72	45.21	36.85	48.23	26.4	19.9	31.85
Merged-chr6-24647363-2	chr6	24646884	24647884	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028459, intron 1 of 10)	intron (NM_028459, intron 1 of 10)	17611.0	NM_001167745	73178.0	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	19.45	24.88	21.27	44.53	26.59	18.49	28.52	16.8	29.35
Merged-chr15-38374884-1	chr15	38374384	38375384	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74173.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	13.73	11.52	14.8	16.87	9.8	13.66	3.17	7.52	14.99
Merged-chr1-189688848-1	chr1	189688348	189689348	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081363)	promoter-TSS (NM_001081363)	-762.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	8.58	5.53	3.7	25.64	18.66	6.43	5.28	1.77	8.74
Merged-chr1-71098141-2	chr1	71097644	71098644	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007525, intron 1 of 10)	MTD|LTR|ERVL-MaLR	4828.0	NM_007525	12021.0	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	10.87	8.29	6.47	11.47	4.2	9.65	8.45	9.73	13.74
Merged-chr10-98708864-1	chr10	98708364	98709364	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-205778.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	46.91	54.83	18.5	24.96	34.99	17.68	30.63	41.12	30.6
Merged-chr12-24564640-1	chr12	24564140	24565140	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7647.0	NM_001161406	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	1.14	2.76	9.25	1.35	4.2	1.61	3.17	1.33	2.5
Merged-chr2-58907013-1	chr2	58906513	58907513	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	151829.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	10.3	11.52	15.72	22.94	18.19	17.68	15.84	15.48	5.0
Merged-chr4-107067320-1	chr4	107066820	107067820	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025500)	promoter-TSS (NM_025500)	332.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	29.75	28.57	25.9	31.71	36.39	28.94	45.42	38.91	19.36
Merged-chr10-99585089-1	chr10	99584589	99585589	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24082.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	6.29	8.29	3.7	4.05	3.73	3.22	7.39	6.63	0.0
Merged-chr10-67124404-1	chr10	67123904	67124904	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2854.0	NM_207221	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	28.03	37.78	27.75	26.99	29.86	16.08	41.19	31.39	21.23
Merged-chr7-97944195-1	chr7	97943695	97944695	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177696, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	24237.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	28.03	24.42	31.45	19.57	15.86	17.68	16.9	16.36	8.74
Merged-chr4-66794438-1	chr4	66793938	66794938	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33113.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	12.01	14.75	9.25	16.87	8.4	12.86	12.67	5.31	0.0
Merged-chr11-73025296-2	chr11	73024816	73025816	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018883, intron 1 of 15)	intron (NM_018883, intron 1 of 15)	6308.0	NM_018883	55984.0	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	28.03	23.5	19.42	22.27	18.66	22.51	21.12	21.67	3.75
Merged-chr6-124981919-2	chr6	124981422	124982422	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-14798.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	16.02	11.06	9.25	12.14	11.2	16.08	9.51	10.61	7.49
Merged-chr1-151035128-2	chr1	151034627	151035627	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41692.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	6.29	7.37	8.32	6.75	3.73	12.86	13.73	7.07	3.12
Merged-chr16-93429582-1	chr16	93429082	93430082	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040494, intron 1 of 2)	intron (NR_040494, intron 1 of 2)	29290.0	NR_040494	72264.0	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	5.15	2.3	1.85	8.1	4.67	3.22	2.11	1.77	3.75
Merged-chr7-46838300-3	chr7	46837805	46838805	+	638.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7499.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	52.06	56.68	42.55	62.75	57.38	90.02	63.37	53.5	51.21
Merged-chr2-164836734-1	chr2	164836234	164837234	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038492, intron 8 of 14)	intron (NM_001038492, intron 8 of 14)	2961.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	14.3	11.52	22.2	16.87	10.26	28.13	19.01	14.15	16.24
Merged-chr11-87986600-1	chr11	87986100	87987100	+	638.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168472)	promoter-TSS (NM_001168472)	-15.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	60.07	50.23	45.32	55.33	41.99	45.01	87.66	47.31	37.47
Merged-chr9-64703724-3	chr9	64703218	64704218	+	637.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134399, intron 23 of 24)	MIRc|SINE|MIR	34038.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	107.55	121.19	82.32	128.87	118.49	88.42	107.73	109.66	92.43
Merged-chr2-52958663-3	chr2	52958177	52959177	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	100809.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	58.92	41.93	27.75	56.0	36.85	33.76	34.85	43.33	13.74
Merged-chr10-17043174-3	chr10	17042687	17043687	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	52595.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.01	4.15	0.0	6.75	6.53	1.61	7.39	3.98	5.0
Merged-chr1-172324862-3	chr1	172324362	172325362	+	637.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360808, intron 3 of 3)	intron (NM_001360808, intron 3 of 3)	4460.0	NM_008429	16524.0	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	8.01	3.23	1.85	8.1	4.67	3.22	1.06	0.88	1.25
Merged-chr4-40680571-3	chr4	40680070	40681070	+	637.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22346.0	NM_025545	66408.0	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	2.86	1.38	1.85	0.67	2.33	4.02	2.11	0.88	2.5
Merged-chr12-35046410-2	chr12	35045881	35046881	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001014973)	promoter-TSS (NM_001014973)	-808.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	140.15	230.85	91.57	136.97	151.15	120.57	138.36	226.83	101.17
Merged-chr1-91239304-2	chr1	91238805	91239805	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10999.0	NM_001355763	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	5.72	2.76	2.77	2.7	5.6	1.61	2.11	2.65	2.5
Merged-chr6-140853745-2	chr6	140853254	140854254	+	637.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	226869.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	6.86	2.76	1.85	3.37	4.2	1.61	6.34	4.42	5.0
Merged-chr16-93915630-1	chr16	93915130	93916130	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	13937.0	NM_001165925	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	2.29	0.0	0.0	7.42	1.87	0.0	14.79	7.07	10.62
Merged-chr2-79757210-1	chr2	79756710	79757710	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290743, intron 3 of 4)	ORR1A4|LTR|ERVL-MaLR	49430.0	NM_001290743	75276.0	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	6.29	6.45	2.77	10.12	9.8	9.65	12.67	7.52	2.5
Merged-chr18-75904441-1	chr18	75903941	75904941	+	637.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	84263.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	4.0	0.0	0.0	4.72	6.06	6.43	53.87	57.48	36.85
Merged-chr10-62782060-3	chr10	62781560	62782560	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026201, intron 5 of 24)	B2_Mm1a|SINE|B2	10308.0	NM_026201	67500.0	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	9.72	5.99	10.17	5.4	5.6	12.86	7.39	7.96	3.75
Merged-chr11-78467756-1	chr11	78467256	78468256	+	637.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026740, intron 2 of 4)	intron (NM_026740, intron 2 of 4)	2055.0	NM_026740	52466.0	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	34.32	29.95	20.35	24.96	23.79	38.58	16.9	26.53	18.74
Merged-chr8-84687174-3	chr8	84686616	84687616	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	746.0	NM_025788	66830.0	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	59.49	70.5	76.77	63.42	58.78	83.59	78.16	57.92	72.45
Merged-chr4-152333177-3	chr4	152332690	152333690	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_102292, exon 5 of 5)	non-coding (NR_102292, exon 5 of 5)	-5461.0	NM_029216	269610.0	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	4.58	0.92	1.85	2.02	0.47	6.43	3.17	2.21	0.0
Merged-chr4-150237909-3	chr4	150237388	150238388	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023119, intron 1 of 11)	intron (NM_023119, intron 1 of 11)	564.0	NM_001025388	433182.0	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	77.23	88.93	80.47	76.92	95.17	122.18	107.73	135.3	91.81
Merged-chr5-24527122-1	chr5	24526622	24527622	+	637.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_015739)	promoter-TSS (NM_015739)	-274.0	NM_015739	231044.0	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	5.72	0.92	0.0	3.37	0.0	0.0	3.17	1.77	0.0
Merged-chr3-96811435-3	chr3	96810932	96811932	+	637.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163497, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	3089.0	NM_018767	54215.0	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	16.02	15.67	30.52	9.45	14.0	19.29	14.79	12.38	5.0
Merged-chr8-41375717-2	chr8	41375236	41376236	+	637.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1039.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	45.19	84.78	50.87	62.07	57.85	61.89	133.08	155.64	81.81
Merged-chr19-40673460-2	chr19	40672956	40673956	+	637.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	L2a|LINE|L2	13686.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	17.16	23.96	37.0	23.62	15.39	26.53	29.57	12.38	18.74
Merged-chr19-33380560-2	chr19	33380071	33381071	+	637.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 2 of 4)	intron (NM_001146342, intron 2 of 4)	11724.0	NM_001167818	67795.0	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	4.58	3.23	3.7	2.02	1.4	3.22	2.11	0.88	1.87
Merged-chr11-114750260-2	chr11	114749765	114750765	+	637.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034878, intron 8 of 12)	intron (NM_001034878, intron 8 of 12)	-15124.0	NM_001102615	286942.0	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	5.72	3.23	6.47	7.42	0.47	3.22	8.45	3.54	5.62
Merged-chr11-121658461-3	chr11	121657962	121658962	+	637.616638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178664, intron 3 of 12)	intron (NM_178664, intron 3 of 12)	14689.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	13.73	18.43	10.17	12.14	18.66	16.08	11.62	8.4	10.62
Merged-chr1-151307264-3	chr1	151306761	151307761	+	637.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37225.0	NM_001359262	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	4.0	5.99	4.62	12.14	7.93	22.51	10.56	8.84	16.86
Merged-chr11-120612854-3	chr11	120612368	120613368	+	637.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347615, intron 6 of 12)	intron (NM_001347615, intron 6 of 12)	4391.0	NM_001347616	208990.0	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	PPL7|mPPL7	neuropeptide B	protein-coding	5.15	0.92	0.0	4.05	1.87	3.22	3.17	1.33	3.75
Merged-chr1-170992725-2	chr1	170992220	170993220	+	637.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-16649.0	NM_001077189	14130.0	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	8.01	1.84	5.55	7.42	6.53	4.82	4.22	2.65	1.25
Merged-chr5-103856401-2	chr5	103855859	103856859	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54900.0	NM_001359987	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	2.86	3.69	15.72	3.37	0.47	1.61	4.22	3.54	1.25
Merged-chrX-12005831-3	chrX	12005271	12006271	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74782.0	NM_175045	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	14.3	9.22	6.47	14.17	22.39	17.68	29.57	33.6	19.36
Merged-chr6-122603153-1	chr6	122602653	122603653	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_031159)	promoter-TSS (NM_031159)	-709.0	NM_001134391	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	109.26	121.65	79.55	101.21	109.16	103.69	203.84	226.83	95.55
Merged-chr9-89704444-2	chr9	89703920	89704920	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025360, intron 1 of 2)	intron (NM_025360, intron 1 of 2)	623.0	NM_025360	66111.0	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	34.32	24.88	24.97	26.99	29.86	25.72	22.18	25.65	12.49
Merged-chr7-19370149-2	chr7	19369654	19370654	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001010836, exon 4 of 13)	exon (NM_001010836, exon 4 of 13)	8938.0	NM_001010836	333654.0	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	2.29	0.92	3.7	3.37	5.13	0.0	2.11	0.44	1.25
Merged-chr5-76657703-1	chr5	76657203	76658203	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	65989.0	NM_199032	381644.0	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	1.14	0.0	0.92	2.02	0.0	0.8	5.28	0.44	1.87
Merged-chr14-76852030-2	chr14	76851533	76852533	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91902.0	NR_153763	73883.0	Mm.489041	NR_153763		4930431P22Rik	-	RIKEN cDNA 4930431P22 gene	ncRNA	17.16	15.21	11.1	12.82	10.26	10.45	9.51	7.52	6.25
Merged-chr6-31563976-2	chr6	31563453	31564453	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013723)	promoter-TSS (NM_013723)	-16.0	NM_013723	27205.0	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1|Podxl1	podocalyxin-like	protein-coding	2.86	0.46	1.85	2.02	0.0	0.0	4.22	3.1	7.49
Merged-chr14-103717667-1	chr14	103717167	103718167	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18235.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	2.86	1.38	0.0	4.72	3.73	0.0	1.06	6.63	2.5
Merged-chr4-63948251-2	chr4	63947749	63948749	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86965.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.0	3.69	5.55	2.7	0.47	3.22	1.06	1.77	0.62
Merged-chr5-135712453-2	chr5	135711949	135712949	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	MTEb|LTR|ERVL-MaLR	23304.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	57.21	45.62	32.37	89.06	56.45	55.46	41.19	46.87	30.6
Merged-chr6-86004423-3	chr6	86003899	86004899	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_155305)	promoter-TSS (NR_155305)	46.0	NR_155305	75355.0	Mm.142685	NR_155305	ENSMUSG00000106791	4930553P18Rik	-	RIKEN cDNA 4930553P18 gene	ncRNA	4.0	2.3	3.7	2.02	1.87	1.61	1.06	1.77	1.25
Merged-chr9-118821802-1	chr9	118821302	118822302	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 4 of 13)	intron (NM_001113514, intron 4 of 13)	-104734.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	4.0	4.15	11.1	2.7	1.87	2.41	10.56	4.42	10.62
Merged-chr17-66711368-1	chr17	66710868	66711868	+	637.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 23 of 32)	ORR1E|LTR|ERVL-MaLR	-3088.0	NR_151453	102639882.0	Mm.443262	NR_151453		1700016K05Rik	-	RIKEN cDNA 1700016K05 gene	ncRNA	14.87	13.36	38.85	12.82	18.19	28.94	34.85	39.8	26.85
Merged-chr1-55739193-1	chr1	55738693	55739693	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-192048.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.29	3.23	5.55	6.07	3.73	5.63	6.34	3.54	7.49
Merged-chr5-62672436-1	chr5	62671936	62672936	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 15 of 32)	intron (NM_178407, intron 15 of 32)	93741.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	7.44	5.07	9.25	5.4	5.6	3.22	2.11	0.88	5.62
Merged-chr14-27198924-1	chr14	27198424	27199424	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	-39086.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	6.86	7.83	7.4	0.67	3.27	0.0	3.17	9.29	2.5
Merged-chr9-117902492-2	chr9	117901980	117902980	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-138042.0	NM_001286507	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	1.72	1.38	4.62	1.35	6.53	2.41	5.28	3.54	7.49
Merged-chr14-54528681-2	chr14	54528174	54529174	+	637.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11204.0	NM_001313907	27374.0	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	4.0	3.23	5.55	4.72	1.87	4.82	3.17	1.33	1.25
Merged-chr11-31736876-1	chr11	31736376	31737376	+	637.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65014.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	61.78	40.09	41.62	76.92	52.72	47.42	80.27	53.06	32.48
Merged-chr1-91179256-3	chr1	91178760	91179760	+	637.466675	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	-562.0	NM_016894	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	6.29	5.07	0.0	2.7	0.93	2.41	4.22	3.1	3.75
Merged-chr5-9056258-3	chr5	9055776	9056776	+	637.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44461.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.0	3.69	3.7	4.05	1.87	1.61	4.22	2.21	0.62
Merged-chr9-106888823-2	chr9	106888330	106889330	+	637.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029103, exon 4 of 4)	3' UTR (NM_029103, exon 4 of 4)	-1830.0	NM_175402	109095.0	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	11.44	6.91	11.1	12.14	6.06	7.23	17.96	11.5	21.23
Merged-chr8-71654731-2	chr8	71654220	71655220	+	637.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029873, intron 15 of 41)	intron (NM_001029873, intron 15 of 41)	17037.0	NM_001029873	382018.0	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	4.0	0.0	0.0	2.7	2.8	3.22	3.17	0.0	1.25
Merged-chr17-36206123-1	chr17	36205623	36206623	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-15972.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	15.45	11.98	3.7	29.01	15.39	10.45	13.73	19.46	5.0
Merged-chr1-180720543-1	chr1	180720043	180721043	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5500.0	NM_133225	170760.0	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	6.29	4.15	1.85	4.72	1.4	3.22	6.34	0.88	0.0
Merged-chr11-110271901-3	chr11	110271381	110272381	+	637.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_147219, exon 39 of 39)	3' UTR (NM_147219, exon 39 of 39)	-20105.0	NM_001166557	76184.0	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	5.72	7.37	3.7	4.05	4.67	4.82	2.11	2.21	3.75
Merged-chr3-84918580-1	chr3	84918080	84919080	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	B4A|SINE|B4	-33631.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.58	2.76	3.7	8.77	7.93	5.63	7.39	1.77	8.74
Merged-chr4-19870586-3	chr4	19870084	19871084	+	637.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51857.0	NM_028746	74087.0	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	31.46	24.42	37.0	46.56	25.19	53.85	17.96	9.73	27.48
Merged-chr1-181230934-1	chr1	181230434	181231434	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18956.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	5.15	2.3	7.4	10.8	7.0	11.25	9.51	5.31	5.0
Merged-chr17-25985255-1	chr17	25984755	25985755	+	637.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347334, intron 1 of 11)	CpG	541.0	NR_151779	50817.0	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	128.71	155.28	123.94	153.84	148.82	171.21	203.84	210.03	105.55
Merged-chr7-112180354-2	chr7	112179856	112180856	+	637.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20874.0	NM_001360257	50781.0	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148|dkk-3|mDkk-3	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.57	2.3	0.0	1.35	1.4	0.0	1.06	0.0	2.5
Merged-chr5-113954619-2	chr5	113954110	113955110	+	637.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198109, intron 10 of 14)	intron (NM_198109, intron 10 of 14)	39147.0	NM_198109	231637.0	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot protein phosphatase 1	protein-coding	2.29	4.15	5.55	3.37	2.8	1.61	3.17	3.98	3.75
Merged-chr1-191314099-2	chr1	191313593	191314593	+	637.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025424, intron 1 of 3)	intron (NM_025424, intron 1 of 3)	4025.0	NM_025424	66208.0	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	13.73	7.37	7.4	15.52	2.8	7.23	19.01	15.48	18.11
Merged-chr11-53735285-2	chr11	53734806	53735806	+	637.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14512.0	NM_010558	16191.0	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	5.72	2.76	3.7	5.4	2.8	1.61	7.39	9.29	5.0
Merged-chr8-71364382-3	chr8	71363925	71364925	+	637.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6A|LTR|ERVK	-2423.0	NM_001145780	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	8.01	8.29	5.55	14.17	9.33	12.06	7.39	7.96	8.12
Merged-chr8-86903312-3	chr8	86902795	86903795	+	637.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18037.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	2.29	5.99	0.0	2.02	0.47	1.61	5.28	3.98	1.25
Merged-chr15-36163897-2	chr15	36163418	36164418	+	637.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081253, intron 1 of 4)	intron (NM_001081253, intron 1 of 4)	966.0	NM_001081253	78803.0	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	5.15	5.07	1.85	4.72	6.06	1.61	10.56	4.42	3.75
Merged-chrX-12128405-3	chrX	12127971	12128971	+	637.138916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	CpG	31875.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	8.01	8.29	3.7	10.8	7.0	3.22	6.34	7.96	4.37
Merged-chr10-93309354-1	chr10	93308854	93309854	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	1805.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	15.45	12.9	14.8	21.59	13.06	20.09	6.34	5.31	1.25
Merged-chr14-20576323-2	chr14	20575822	20576822	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030180, intron 13 of 20)	intron (NM_030180, intron 13 of 20)	-29749.0	NM_008914	19056.0	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	2.86	1.84	3.7	5.4	3.73	4.02	5.28	0.44	5.0
Merged-chr8-84700088-2	chr8	84699595	84700595	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164560)	TTS (NM_001164560)	-1362.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	8.01	12.44	38.85	8.77	11.2	12.86	2.11	5.75	3.75
Merged-chr3-101616040-1	chr3	101615540	101616540	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11333.0	NM_144900	11928.0	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	12.59	9.68	1.85	8.1	3.73	3.22	16.9	8.4	2.5
Merged-chr16-69948927-1	chr16	69948427	69949427	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	-85183.0	NM_173069	224318.0	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	4.58	2.76	0.0	1.35	1.87	1.61	2.11	2.65	0.0
Merged-chr4-135545261-1	chr4	135544761	135545761	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013756, intron 15 of 15)	intron (NM_001013756, intron 15 of 15)	28359.0	NM_001013756	230824.0	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead like transcription factor 3	protein-coding	3.43	1.84	0.0	3.37	4.67	1.61	5.28	0.44	3.12
Merged-chr7-29247428-1	chr7	29246928	29247928	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028179)	TTS (NM_028179)	1039.0	NM_028179	72275.0	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	1.72	0.46	4.62	2.02	0.0	0.0	1.06	0.0	1.25
Merged-chr19-37135676-2	chr19	37135194	37136194	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290829, intron 3 of 9)	(T)n|Simple_repeat|Simple_repeat	-38149.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.15	5.07	9.25	8.77	10.73	12.86	8.45	8.4	6.25
Merged-chr16-75850570-1	chr16	75850070	75851070	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58696.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	4.58	6.91	3.7	7.42	5.13	12.86	15.84	6.63	3.12
Merged-chr4-105882007-1	chr4	105881507	105882507	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-359206.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	6.29	3.69	1.85	1.35	1.87	1.61	5.28	1.77	1.87
Merged-chr10-116951141-1	chr10	116950641	116951641	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001003950)	promoter-TSS (NM_001003950)	579.0	NR_038026	71086.0	Mm.214134	NR_038025	ENSMUSG00000112627	4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	24.6	32.72	20.35	28.34	19.13	17.68	53.87	34.93	23.73
Merged-chr14-61438488-2	chr14	61438027	61439027	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008466, intron 1 of 16)	intron (NM_008466, intron 1 of 16)	1420.0	NM_008466	16648.0	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	21.17	42.39	25.9	20.24	19.59	12.86	34.85	32.72	24.36
Merged-chr15-64240928-2	chr15	64240424	64241424	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	71749.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	40.04	41.01	43.47	33.06	35.45	38.58	38.02	35.82	34.97
Merged-chr15-63969529-1	chr15	63969029	63970029	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360038, intron 2 of 11)	URR1B|DNA|hAT-Charlie	28537.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	12.59	13.82	3.7	14.17	9.33	9.65	9.51	14.15	16.24
Merged-chr8-10902651-1	chr8	10902151	10903151	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_102285)	TTS (NR_102285)	2729.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	12.59	9.68	7.4	14.17	5.6	5.63	12.67	11.5	7.49
Merged-chr2-70126856-1	chr2	70126356	70127356	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177376, exon 8 of 35)	exon (NM_177376, exon 8 of 35)	87730.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	5.15	1.84	3.7	5.4	0.93	1.61	3.17	0.44	1.25
Merged-chr3-101288214-1	chr3	101287714	101288714	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013486)	promoter-TSS (NM_013486)	-275.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.0	0.92	3.7	3.37	1.4	4.82	6.34	1.77	3.12
Merged-chr18-32281707-1	chr18	32281207	32282207	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	41376.0	NM_133658	13872.0	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	4.58	0.46	3.7	5.4	1.4	1.61	3.17	2.65	2.5
Merged-chr19-4417376-1	chr19	4416876	4417876	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20299.0	NM_001001984	225876.0	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	5.15	0.92	3.7	3.37	2.8	1.61	5.28	0.88	6.87
Merged-chr16-16854977-1	chr16	16854477	16855477	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9008.0	NM_001190325	16136.0	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	7.44	2.76	3.7	8.1	1.4	8.04	6.34	4.86	11.87
Merged-chr10-96934881-1	chr10	96934381	96935381	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-100887.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	8.58	2.76	0.0	9.45	2.33	0.0	4.22	1.77	0.0
Merged-chr10-52426635-1	chr10	52426135	52427135	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030250, intron 1 of 4)	intron (NM_030250, intron 1 of 4)	9088.0	NM_030250	52014.0	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	28.6	23.5	27.75	22.27	28.92	29.74	27.46	33.16	30.6
Merged-chr8-69090341-1	chr8	69089841	69090841	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007509, intron 1 of 13)	intron (NM_007509, intron 1 of 13)	-1119.0	NM_153054	110877.0	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	63.5	82.48	61.05	80.29	88.17	45.82	151.03	176.42	72.45
Merged-chrX-12130235-1	chrX	12129735	12130735	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	30111.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	4.0	5.07	12.02	3.37	2.33	2.41	2.11	2.21	5.0
Merged-chr3-79861138-2	chr3	79860644	79861644	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18482.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	6.29	1.84	3.7	4.05	5.6	0.0	10.56	7.96	4.37
Merged-chr8-83331763-1	chr8	83331263	83332263	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170691, intron 1 of 8)	intron (NM_001170691, intron 1 of 8)	723.0	NM_001170691	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	33.18	44.24	15.72	49.93	36.85	36.97	48.58	55.27	28.1
Merged-chr14-50991316-2	chr14	50990827	50991827	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-16424.0	NM_001162863	75019.0	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	8.58	9.22	16.65	6.75	9.8	0.0	15.84	17.24	7.49
Merged-chr15-36763847-1	chr15	36763347	36764347	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27085.0	NM_001253807	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.58	1.38	3.7	2.7	1.4	4.82	1.06	0.44	5.62
Merged-chr6-57707395-1	chr6	57706895	57707895	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133737, intron 1 of 8)	MLT1F1|LTR|ERVL-MaLR	4940.0	NM_133737	71835.0	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	33.18	45.62	24.97	44.53	39.19	39.39	49.64	61.02	23.73
Merged-chr5-117140625-1	chr5	117140125	117141125	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	7037.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	10.3	8.29	18.5	14.84	8.86	24.11	8.45	6.63	15.61
Merged-chr1-88263024-1	chr1	88262524	88263524	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040291)	TTS (NR_040291)	6384.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	9.72	19.35	22.2	12.82	11.66	21.7	13.73	17.69	28.73
Merged-chrX-52613991-1	chrX	52613491	52614491	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016697)	promoter-TSS (NM_016697)	-17.0	NM_016697	14734.0	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	1.14	0.46	1.85	2.02	0.93	0.0	2.11	0.0	2.5
Merged-chr15-101081227-1	chr15	101080727	101081727	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26828.0	NM_001214911	668225.0	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	13.16	5.99	4.62	11.47	7.46	26.53	4.22	3.1	20.61
Merged-chr5-144358071-1	chr5	144357571	144358571	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025833)	promoter-TSS (NM_025833)	41.0	NM_025833	66898.0	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	2.86	3.69	6.47	10.8	1.4	2.41	3.17	1.77	1.25
Merged-chr15-93310377-1	chr15	93309877	93310877	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024189, intron 2 of 3)	MTC|LTR|ERVL-MaLR	26558.0	NR_028315	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	5.72	6.91	14.8	3.37	2.8	6.43	5.28	2.21	7.49
Merged-chr6-72553727-1	chr6	72553227	72554227	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271395, intron 1 of 9)	B1_Mur1|SINE|Alu	4080.0	NM_001271395	12332.0	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	39.47	39.17	35.15	39.13	36.85	96.45	54.92	42.89	41.22
Merged-chr15-62387767-1	chr15	62387267	62388267	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168316.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.29	8.29	6.47	7.42	6.06	1.61	2.11	6.19	6.25
Merged-chr2-26931129-1	chr2	26930629	26931629	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011512, intron 1 of 5)	intron (NM_011512, intron 1 of 5)	2382.0	NM_011512	20932.0	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	35.47	42.39	24.97	37.11	23.79	32.15	27.46	30.95	23.11
Merged-chr9-58555054-1	chr9	58554554	58555554	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-14114.0	NM_133983	102657.0	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	4.0	6.91	3.7	26.31	15.86	8.04	4.22	7.52	5.0
Merged-chr4-148632261-1	chr4	148631761	148632761	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5265.0	NM_001003899	230908.0	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	10.87	3.69	1.85	4.72	4.67	3.22	2.11	3.1	6.25
Merged-chr16-21570357-1	chr16	21569857	21570857	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081366, intron 41 of 46)	intron (NM_001081366, intron 41 of 46)	124308.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.43	4.15	0.0	4.05	4.2	4.82	9.51	11.05	2.5
Merged-chr16-3234553-1	chr16	3234053	3235053	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-357845.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.29	3.23	4.62	5.4	2.8	6.43	4.22	3.54	10.62
Merged-chr4-123083604-1	chr4	123083104	123084104	+	637.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21557.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	3.43	1.84	0.0	2.02	1.4	0.0	3.17	3.54	0.62
Merged-chr5-123620265-2	chr5	123619784	123620784	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359224, intron 12 of 18)	intron (NM_001359224, intron 12 of 18)	-47269.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	16.02	13.36	26.82	35.09	21.46	23.31	73.93	56.16	48.09
Merged-chr1-60898889-1	chr1	60898389	60899389	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10136.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	34.9	45.16	33.3	6.07	4.67	4.02	72.88	69.42	44.34
Merged-chr15-67312824-1	chr15	67312324	67313324	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	intron (NR_045140, intron 5 of 8)	86055.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	5.72	3.69	0.0	5.4	4.67	1.61	2.11	1.77	2.5
Merged-chr11-31942461-1	chr11	31941961	31942961	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23172.0	NM_026262	67592.0	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.57	2.76	3.7	6.75	0.93	0.0	2.11	0.88	1.25
Merged-chr16-92788420-1	chr16	92787920	92788920	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	37654.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	7.44	4.61	24.97	10.8	9.33	18.49	5.28	2.65	7.49
Merged-chr6-58918515-1	chr6	58918015	58919015	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361966, intron 25 of 25)	intron (NM_001361966, intron 25 of 25)	-11389.0	NM_021432	58243.0	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	15.45	9.22	7.4	10.12	10.26	16.88	7.39	4.42	7.49
Merged-chr8-105161377-1	chr8	105160877	105161877	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-9297.0	NM_001161457	12400.0	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	4.58	2.76	1.85	3.37	4.67	2.41	5.28	1.77	2.5
Merged-chr15-3293692-1	chr15	3293192	3294192	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166063, intron 4 of 8)	C-rich|Low_complexity|Low_complexity	9834.0	NM_001166063	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	2.86	6.91	3.7	5.4	2.33	6.43	3.17	5.31	5.0
Merged-chr8-128057985-1	chr8	128057485	128058485	+	637.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	220240.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	12.01	15.21	9.25	8.1	13.06	3.22	16.9	22.55	14.99
Merged-chr4-134634119-1	chr4	134633619	134634619	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	UCON29|DNA|PiggyBac?	-66268.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	8.01	8.29	10.17	14.17	7.93	7.23	3.17	3.1	0.0
Merged-chr19-55830773-1	chr19	55830273	55831273	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-64548.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.01	18.43	12.02	23.62	10.26	9.65	13.73	9.29	13.74
Merged-chr1-166441891-1	chr1	166441391	166442391	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13597.0	NR_151518	102636226.0	Mm.412602	NR_151518		Gm33354	-	predicted gene, 33354	ncRNA	6.29	7.37	1.85	9.45	7.46	12.06	15.84	22.11	15.61
Merged-chrX-77836102-1	chrX	77835602	77836602	+	637.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	17398.0	NM_017471	54192.0	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	6.29	2.76	0.0	2.02	0.93	1.61	1.06	0.88	0.0
Merged-chr17-83631455-2	chr17	83630927	83631927	+	636.958374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153512, exon 1 of 2)	exon (NM_153512, exon 1 of 2)	468.0	NM_153512	225030.0	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	5.15	2.3	0.0	8.1	2.33	1.61	4.22	1.33	6.25
Merged-chr1-95666991-3	chr1	95666518	95667518	+	636.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159745, intron 1 of 3)	intron (NM_001159745, intron 1 of 3)	576.0	NM_009183	20452.0	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	68.65	53.91	29.6	77.59	52.25	26.53	40.14	49.52	34.35
Merged-chr6-122660677-2	chr6	122660181	122661181	+	636.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34257.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	10.87	6.91	5.55	4.05	2.33	0.0	2.11	3.1	3.12
Merged-chr4-86695229-3	chr4	86694744	86695744	+	636.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-25185.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	4.0	5.07	4.62	6.75	4.67	1.61	10.56	1.33	0.0
Merged-chr13-58389542-3	chr13	58389053	58390053	+	636.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	3333.0	NR_029825	723902.0		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	14.3	11.98	13.87	16.87	14.0	16.08	23.24	16.8	15.61
Merged-chr10-62886174-3	chr10	62885660	62886660	+	636.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253857, intron 1 of 12)	PB1D9|SINE|Alu	1164.0	NM_001253857	52463.0	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	1.14	1.38	1.85	6.75	1.87	6.43	4.22	2.65	5.0
Merged-chr1-171614152-3	chr1	171613639	171614639	+	636.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6729.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	12.01	6.45	1.85	12.14	11.66	14.47	1.06	2.21	8.74
Merged-chr16-18052826-3	chr16	18052328	18053328	+	636.755554	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010047)	promoter-TSS (NM_010047)	-32.0	NM_010047	13353.0	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	2.86	1.38	1.85	2.7	4.67	4.82	3.17	3.1	6.25
Merged-chr11-80043092-2	chr11	80042629	80043629	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	37862.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	102.97	94.0	37.0	77.59	58.31	58.68	82.38	78.26	44.97
Merged-chr5-45535012-2	chr5	45534544	45535544	+	636.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021416, intron 12 of 15)	intron (NM_021416, intron 12 of 15)	14815.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.57	2.3	0.0	3.37	0.93	0.0	2.11	3.1	2.5
Merged-chr4-59786869-2	chr4	59786390	59787390	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3035.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	18.88	18.89	18.5	33.06	23.33	20.9	23.24	26.53	22.48
Merged-chr5-66014151-2	chr5	66013652	66014652	+	636.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9867.0	NR_027961	231253.0	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	15.45	18.89	10.17	33.06	26.59	30.54	17.96	8.4	6.87
Merged-chr7-3286223-3	chr7	3285716	3286716	+	636.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2822.0	NM_001093764	50918.0	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	10.3	8.29	5.55	4.72	8.86	8.04	7.39	7.52	5.0
Merged-chr13-96697930-3	chr13	96697423	96698423	+	636.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-26987.0	NM_008255	15357.0	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	5.72	1.84	9.25	4.72	6.53	1.61	3.17	9.29	2.5
Merged-chr9-21137432-3	chr9	21136929	21137929	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6154.0	NM_001205312	54721.0	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	36.61	35.94	40.7	29.69	20.99	32.96	35.91	38.91	40.59
Merged-chr12-105001114-1	chr12	105000614	105001614	+	636.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	-2437.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	2.29	1.84	0.0	2.7	0.47	3.22	2.11	0.88	1.25
Merged-chr8-71368482-3	chr8	71367924	71368924	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025917, intron 4 of 7)	intron (NM_025917, intron 4 of 7)	1207.0	NM_025917	67023.0	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	70.93	77.41	67.52	36.43	28.92	51.44	76.05	79.15	54.96
Merged-chr16-43540307-3	chr16	43539824	43540824	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-100331.0	NR_030576	100124467.0		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.57	0.46	1.85	3.37	2.8	0.0	3.17	2.65	3.75
Merged-chr9-107696303-3	chr9	107695829	107696829	+	636.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 2 of 17)	intron (NM_011349, intron 2 of 17)	9262.0	NM_001311151	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.0	3.23	1.85	3.37	2.33	11.25	2.11	2.21	5.0
Merged-chr5-147861469-2	chr5	147860961	147861961	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025624, intron 1 of 5)	intron (NM_025624, intron 1 of 5)	833.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	114.41	167.26	118.39	96.48	117.56	114.14	147.87	138.84	84.94
Merged-chr6-56832837-1	chr6	56832337	56833337	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012056, intron 1 of 9)	intron (NM_012056, intron 1 of 9)	778.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	16.02	6.45	7.4	18.89	14.0	11.25	11.62	3.98	1.25
Merged-chr6-3200823-1	chr6	3200323	3201323	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	-87696.0	NR_036696	667335.0	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.57	0.92	1.85	0.0	0.93	1.61	0.0	1.33	0.0
Merged-chr11-121720538-2	chr11	121720039	121721039	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18112.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	12.01	18.43	23.12	23.62	13.06	19.29	24.29	17.69	19.36
Merged-chr5-43897885-1	chr5	43897385	43898385	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	RMER1B|Other|Other	29076.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	10.3	3.23	14.8	11.47	11.2	4.82	13.73	3.1	9.37
Merged-chr19-9060295-1	chr19	9059795	9060795	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	27661.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	6.86	4.61	5.55	6.07	3.27	4.82	4.22	0.88	4.37
Merged-chr18-34222265-2	chr18	34221746	34222746	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040534)	promoter-TSS (NR_040534)	-474.0	NR_040534	633395.0	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	-	ribosomal protein L29 pseudogene	pseudo	105.26	147.91	97.12	93.79	96.1	58.68	140.47	159.18	94.3
Merged-chr15-83607678-1	chr15	83607178	83608178	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271473, intron 19 of 19)	intron (NM_001271473, intron 19 of 19)	-12521.0	NM_183017	223723.0	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	8.01	0.92	3.7	3.37	1.87	1.61	1.06	0.44	7.49
Merged-chr7-135793136-2	chr7	135792664	135793664	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76785.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	3.43	2.3	7.4	2.02	0.0	1.61	6.34	0.88	2.5
Merged-chr1-184063182-2	chr1	184062692	184063692	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022019, intron 2 of 3)	intron (NM_022019, intron 2 of 3)	28811.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	24.6	15.67	12.02	18.22	8.4	12.06	17.96	18.13	9.99
Merged-chr14-20708601-1	chr14	20708101	20709101	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027996, intron 1 of 25)	intron (NM_027996, intron 1 of 25)	1049.0	NM_001252082	268721.0	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	37.18	33.64	18.5	51.28	34.99	25.72	39.08	23.43	21.23
Merged-chr9-110672655-1	chr9	110672155	110673155	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	16152.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	6.86	3.23	9.25	2.02	4.2	4.02	8.45	3.54	1.87
Merged-chr1-184845019-2	chr1	184844507	184845507	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 1 of 7)	intron (NM_133684, intron 1 of 7)	840.0	NM_133684	67247.0	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	36.61	37.78	41.62	38.46	34.06	33.76	44.36	53.94	26.23
Merged-chr5-74975678-2	chr5	74975175	74976175	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26481.0	NR_045866	619945.0	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	6.29	2.3	1.85	4.72	0.47	3.22	2.11	0.88	3.75
Merged-chr14-70817998-1	chr14	70817498	70818498	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34935.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	9.15	6.45	14.8	6.75	9.33	12.06	8.45	6.19	7.49
Merged-chr5-66165871-2	chr5	66165351	66166351	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040695)	TTS (NR_040695)	-13897.0	NM_001127382	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.0	2.76	3.7	6.75	6.06	6.43	5.28	4.86	3.75
Merged-chr7-98712242-1	chr7	98711742	98712742	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355114, intron 4 of 5)	intron (NM_001355114, intron 4 of 5)	8995.0	NM_028410	72981.0	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	52.06	40.09	27.75	90.41	73.71	29.74	57.03	45.1	25.61
Merged-chr17-9031910-2	chr17	9031398	9032398	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43565.0	NM_001347544	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	1.14	2.76	0.0	2.02	2.33	1.61	4.22	1.77	1.25
Merged-chr14-64842676-1	chr14	64842176	64843176	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 6 of 9)	intron (NM_177338, intron 6 of 9)	107181.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	13.16	11.06	12.02	19.57	21.93	14.47	8.45	7.07	14.99
Merged-chr6-122576512-1	chr6	122576012	122577012	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22703.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	59.49	60.36	58.27	63.42	41.05	41.8	46.47	26.97	49.96
Merged-chr1-134080261-1	chr1	134079761	134080761	+	636.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1106.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	34.32	23.5	17.57	45.21	14.46	32.15	39.08	23.88	23.11
Merged-chr2-91725726-1	chr2	91725226	91726226	+	636.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR104_Mam|LTR|Gypsy	-4412.0	NM_172669	228361.0	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	27.46	44.24	34.22	40.48	26.12	36.97	33.8	44.66	30.6
Merged-chr13-116964204-1	chr13	116963704	116964704	+	636.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081009, intron 3 of 26)	intron (NM_001081009, intron 3 of 26)	61312.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	5.72	11.52	3.7	2.7	3.27	3.22	13.73	20.78	12.49
Merged-chr10-60741723-2	chr10	60741214	60742214	+	636.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 2 of 5)	intron (NM_023596, intron 2 of 5)	11068.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	10.3	11.52	21.27	14.17	9.33	11.25	11.62	14.15	6.25
Merged-chr12-72535358-2	chr12	72534859	72535859	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026327)	promoter-TSS (NM_026327)	-998.0	NM_026327	67708.0	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	8.58	4.15	0.92	12.14	7.0	8.04	14.79	6.63	7.49
Merged-chr2-38824070-2	chr2	38823593	38824593	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-28642.0	NR_029568	387176.0		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	6.29	5.07	9.25	12.82	10.26	11.25	7.39	7.07	3.75
Merged-chr17-35122118-2	chr17	35121577	35122577	+	636.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001303476)	promoter-TSS (NM_001303476)	-24.0	NM_001303446	13001.0	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	207.66	188.46	192.39	145.06	178.21	180.05	146.81	183.5	106.79
Merged-chr12-76548197-1	chr12	76547697	76548697	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_046044)	promoter-TSS (NR_046044)	-272.0	NR_046044	100504549.0	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	6.29	7.83	3.7	14.84	6.53	5.63	8.45	8.84	9.99
Merged-chr1-43447812-3	chr1	43447320	43448320	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	2069.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	16.59	11.98	16.65	16.87	10.73	8.04	43.3	40.24	9.99
Merged-chr6-38691529-1	chr6	38691029	38692029	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	28460.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	64.64	82.02	46.25	79.62	88.17	70.73	69.71	91.97	35.6
Merged-chr17-35314775-1	chr17	35314275	35315275	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-5772.0	NM_010390	15006.0	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	1.72	3.69	0.0	4.05	3.73	3.22	5.28	5.75	3.12
Merged-chr18-53088441-1	chr18	53087941	53088941	+	636.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87851.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	17.16	19.35	12.95	12.82	10.26	4.82	79.21	86.22	34.35
Merged-chr14-31664413-1	chr14	31663913	31664913	+	636.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025295, intron 2 of 3)	LTR37B|LTR|ERV1	23356.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.15	4.15	1.85	3.37	3.73	7.23	1.06	2.65	0.0
Merged-chr3-36402049-1	chr3	36401549	36402549	+	636.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR41C|LTR|ERV1	73475.0	NR_105976	102466786.0		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	5.72	3.23	5.55	2.7	2.33	3.22	5.28	1.33	1.25
Merged-chr9-65432471-3	chr9	65431946	65432946	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3336.0	NM_027134	69606.0	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	12.01	6.45	3.7	2.02	3.27	0.0	4.22	2.21	3.75
Merged-chr18-10885911-3	chr18	10885416	10886416	+	636.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-100364.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	1.72	2.3	0.92	2.02	1.4	4.82	1.06	0.44	1.25
Merged-chr19-45812341-2	chr19	45811846	45812846	+	636.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001276358)	promoter-TSS (NM_001276358)	-55.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	2.86	1.84	12.02	2.7	2.8	5.63	2.11	3.1	2.5
Merged-chr3-52031473-2	chr3	52030978	52031978	+	636.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	73528.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.86	6.45	0.0	6.75	8.86	4.82	6.34	3.54	6.87
Merged-chr3-59235577-3	chr3	59235093	59236093	+	636.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177855, intron 19 of 43)	intron (NM_177855, intron 19 of 43)	-24711.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	38.33	69.12	41.62	45.21	40.59	39.39	42.25	35.37	44.97
Merged-chr6-120539307-3	chr6	120538854	120539854	+	636.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8055.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	6.86	1.84	6.47	8.77	5.6	12.06	4.22	3.54	0.0
Merged-chr7-27685883-3	chr7	27685385	27686385	+	636.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198417, intron 1 of 5)	intron (NM_198417, intron 1 of 5)	-3455.0	NM_001112731	112415.0	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	5.15	5.07	0.0	8.77	0.0	5.63	5.28	1.77	2.5
Merged-chr10-127508466-2	chr10	127508004	127509004	+	636.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177707, exon 12 of 12)	3' UTR (NM_177707, exon 12 of 12)	-6435.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	7.44	0.46	0.0	4.05	1.87	2.41	2.11	0.0	2.5
Merged-chr14-55601224-2	chr14	55600725	55601725	+	636.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194346, intron 15 of 20)	intron (NM_194346, intron 15 of 20)	-2760.0	NM_008394	16391.0	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	14.3	19.35	37.92	22.27	14.46	39.39	39.08	38.91	28.1
Merged-chr13-52085248-3	chr13	52084745	52085745	+	636.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11496.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	16.59	5.53	31.45	12.82	5.6	15.27	8.45	6.19	7.49
Merged-chr10-68134276-1	chr10	68133776	68134776	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	144450.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	23.45	22.12	17.57	34.41	29.86	36.17	32.74	23.43	21.23
Merged-chr2-155093573-1	chr2	155093073	155094073	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	6506.0	NR_040634	100504268.0	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	18.31	8.29	11.1	12.82	3.27	6.43	11.62	14.59	7.49
Merged-chr4-45479066-2	chr4	45478565	45479565	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	51763.0	NM_001033306	230126.0	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.29	3.69	12.95	10.12	2.33	11.25	8.45	3.54	2.5
Merged-chr6-34005891-1	chr6	34005391	34006391	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23557.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	8.01	5.99	1.85	6.07	7.46	9.65	6.34	7.52	3.75
Merged-chr18-44392918-1	chr18	44392418	44393418	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027490, intron 1 of 10)	intron (NM_027490, intron 1 of 10)	12418.0	NM_027490	70640.0	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	16.59	14.28	22.2	6.75	14.93	26.53	15.84	5.31	10.62
Merged-chr9-62894303-1	chr9	62893803	62894803	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 9 of 13)	intron (NM_019663, intron 9 of 13)	-32279.0	NR_003965	677044.0	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	-	ribsomal protein S2 pseudogene	pseudo	24.03	34.56	31.45	25.64	26.59	34.56	38.02	36.7	28.1
Merged-chr7-81850418-1	chr7	81849918	81850918	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8583.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	175.05	169.11	129.49	162.61	164.68	163.17	122.52	156.97	130.53
Merged-chr8-84738348-1	chr8	84737848	84738848	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	36021.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	25.74	14.28	17.57	20.24	17.73	22.51	30.63	17.69	8.74
Merged-chr3-137941876-1	chr3	137941376	137942376	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 4 of 8)	intron (NM_011932, intron 4 of 8)	23321.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	38.33	32.72	35.15	43.86	21.46	7.23	26.4	13.71	14.36
Merged-chr14-69251496-1	chr14	69250996	69251996	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026331, intron 1 of 3)	intron (NM_026331, intron 1 of 3)	33607.0	NM_026331	67712.0	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	29.75	21.2	31.45	24.29	20.06	36.97	4.22	8.4	5.62
Merged-chr7-105735549-1	chr7	105735049	105736049	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133951, intron 1 of 6)	ORR1B1-int|LTR|ERVL-MaLR	1035.0	NM_025897	101867.0	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	25.74	29.03	18.5	15.52	16.79	18.49	24.29	27.86	9.99
Merged-chr12-85848392-1	chr12	85847892	85848892	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347395, intron 5 of 32)	MLT1F1|LTR|ERVL-MaLR	23442.0	NM_001081423	320244.0	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	2.86	4.61	0.0	1.35	1.4	1.61	0.0	4.86	2.5
Merged-chr12-111344255-1	chr12	111343755	111344755	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183016, intron 2 of 36)	L1M4c|LINE|L1	33463.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	7.44	5.07	1.85	10.12	3.73	9.65	13.73	10.61	5.0
Merged-chr2-103971275-2	chr2	103970785	103971785	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142336, intron 2 of 3)	intron (NM_001142336, intron 2 of 3)	998.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	55.49	74.65	61.97	72.19	61.58	53.05	76.05	82.69	46.22
Merged-chr5-92339527-1	chr5	92339027	92340027	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	7700.0	NM_001310664	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	1.14	1.84	5.55	1.35	0.93	3.22	1.06	1.77	2.5
Merged-chr10-17728531-1	chr10	17728031	17729031	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5303.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	8.58	6.45	1.85	5.4	2.8	0.0	5.28	2.21	1.25
Merged-chr15-97907406-1	chr15	97906906	97907906	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009504, intron 1 of 9)	(GGA)n|Simple_repeat|Simple_repeat	890.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	14.87	4.15	1.85	6.75	1.4	3.22	9.51	2.65	8.74
Merged-chr12-13242673-1	chr12	13242173	13243173	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134040, intron 5 of 25)	intron (NM_134040, intron 5 of 25)	6501.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	6.86	16.13	0.0	10.12	6.53	5.63	9.51	6.63	8.74
Merged-chr16-75982224-1	chr16	75981724	75982724	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	-18560.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	5.15	5.07	3.7	12.14	5.13	3.22	5.28	7.07	1.25
Merged-chr2-160267534-1	chr2	160267034	160268034	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1|SINE|Alu	59960.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	42.33	32.25	53.65	40.48	39.19	57.07	38.02	53.94	30.6
Merged-chr15-100458215-1	chr15	100457715	100458715	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10796.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	5.15	4.15	1.85	3.37	3.73	0.0	10.56	4.42	2.5
Merged-chr12-17551396-1	chr12	17550896	17551896	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_013614, exon 12 of 12)	3' UTR (NM_013614, exon 12 of 12)	6523.0	NM_013614	18263.0	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	8.01	3.69	1.85	2.02	1.87	0.0	8.45	10.61	6.87
Merged-chr9-104414967-1	chr9	104414467	104415467	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11146.0	NR_035516	100316725.0		NR_035516	ENSMUSG00000089406	Mir2136	mmu-mir-2136	microRNA 2136	ncRNA	5.15	4.61	3.7	5.4	6.53	8.84	6.34	6.63	3.75
Merged-chr17-34136677-1	chr17	34136177	34137177	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 2 of 5)	intron (NM_001360530, intron 2 of 5)	-8739.0	NM_010388	15000.0	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	48.05	36.4	51.8	29.01	17.73	18.49	51.75	45.99	24.98
Merged-chr11-79060097-1	chr11	79059597	79060597	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001348207)	promoter-TSS (NM_001348207)	-261.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	8.01	11.52	3.7	2.02	8.4	4.82	11.62	1.77	2.5
Merged-chr16-30374487-2	chr16	30373995	30374995	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001128096, intron 2 of 33)	intron (NM_001128096, intron 2 of 33)	14035.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	7.44	12.44	8.32	8.1	2.8	0.0	6.34	4.42	6.25
Merged-chr14-70077990-1	chr14	70077490	70078490	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289927, intron 1 of 1)	CpG	195.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	11.44	5.07	10.17	10.12	3.27	3.22	7.39	2.21	4.37
Merged-chr12-34591910-2	chr12	34591412	34592412	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	RCHARR1|DNA|hAT-Charlie	-63023.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.86	5.99	9.25	4.05	5.6	2.41	6.34	18.57	9.99
Merged-chr15-27667418-1	chr15	27666918	27667918	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14124.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	40.62	67.27	46.25	52.63	41.05	58.68	52.81	45.54	30.6
Merged-chr3-43215879-1	chr3	43215379	43216379	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	1473261.0	NM_027271	73852.0	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	7.44	4.61	0.92	5.4	2.33	0.8	5.28	7.52	6.25
Merged-chr1-161974557-1	chr1	161974057	161975057	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204904, intron 1 of 6)	intron (NM_001204904, intron 1 of 6)	5079.0	NM_001204904	75368.0	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	7.44	14.28	7.4	4.05	8.4	4.02	7.39	3.54	6.87
Merged-chr18-25727033-1	chr18	25726533	25727533	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 1 of 12)	intron (NM_001362322, intron 1 of 12)	26950.0	NM_001146295	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.58	1.84	0.0	3.37	0.47	2.41	0.0	1.77	6.25
Merged-chr8-14986775-1	chr8	14986275	14987275	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 25 of 27)	intron (NM_001037736, intron 25 of 27)	-24250.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	3.43	0.92	3.7	0.67	1.4	3.22	0.0	0.44	2.5
Merged-chr2-117346738-3	chr2	117346293	117347293	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-3916.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	13.73	11.06	16.65	5.4	5.6	8.04	6.34	7.07	11.87
Merged-chr10-117747127-1	chr10	117746627	117747627	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029875)	promoter-TSS (NM_029875)	-769.0	NM_029875	215436.0	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	69.79	119.34	46.25	60.05	81.17	70.73	156.32	155.2	105.55
Merged-chr8-13753904-2	chr8	13753393	13754393	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3763.0	NM_027276	69957.0	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	1.72	2.3	5.55	1.35	2.33	1.61	2.11	0.88	1.25
Merged-chr17-57399018-1	chr17	57398518	57399518	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 2 of 22)	L1Md_F2|LINE|L1	40332.0	NM_010130	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	2.86	7.37	5.55	4.05	5.13	4.82	6.34	4.86	6.87
Merged-chr13-111792287-1	chr13	111791787	111792787	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16706.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.86	6.91	11.1	17.54	9.33	18.49	9.51	8.4	18.11
Merged-chr13-55178788-1	chr13	55178288	55179288	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25970.0	NM_008011	14186.0	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	4.0	0.92	0.0	8.77	2.33	3.22	2.11	2.65	3.75
Merged-chr2-90549712-1	chr2	90549212	90550212	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	30935.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	21.74	32.72	27.75	29.01	26.59	32.96	47.53	41.12	28.1
Merged-chr10-81198437-1	chr10	81197937	81198937	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027120, exon 7 of 7)	3' UTR (NM_027120, exon 7 of 7)	3600.0	NM_027120	69564.0	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	2.29	4.15	1.85	1.35	0.47	0.8	3.17	0.44	1.25
Merged-chr9-56636373-1	chr9	56635873	56636873	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311076)	promoter-TSS (NM_001311076)	-725.0	NM_001311076	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	2.29	1.84	0.0	9.45	0.93	3.22	3.17	0.0	0.0
Merged-chr11-59216945-2	chr11	59216429	59217429	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8568.0	NM_024210	67862.0	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	28.6	34.56	35.15	20.92	21.46	35.37	36.97	34.93	21.86
Merged-chr11-58977452-2	chr11	58976944	58977944	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290988)	promoter-TSS (NM_001290988)	-649.0	NM_001290988	94091.0	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	31.46	40.09	61.05	64.77	73.71	97.26	91.89	90.64	46.22
Merged-chr14-103088731-1	chr14	103088231	103089231	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360342, intron 4 of 4)	ORR1E|LTR|ERVL-MaLR	10273.0	NM_001360341	50789.0	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	7.44	3.69	4.62	2.7	7.0	4.82	9.51	5.31	2.5
Merged-chr12-116053420-1	chr12	116052920	116053920	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019565, intron 1 of 2)	intron (NM_019565, intron 1 of 2)	5696.0	NM_019565	56220.0	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	30.89	32.72	23.12	15.52	9.8	3.22	7.39	7.07	12.49
Merged-chr5-139284823-1	chr5	139284323	139285323	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172723, intron 4 of 10)	intron (NM_172723, intron 4 of 10)	31326.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	27.46	37.78	29.6	27.66	22.86	80.38	25.35	26.53	39.35
Merged-chrX-36229514-1	chrX	36229014	36230014	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33610.0	NM_001358476	72693.0	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	5.15	9.68	15.72	14.84	14.0	9.65	5.28	12.38	11.24
Merged-chr12-32693106-1	chr12	32692606	32693606	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127229.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	17.16	26.26	19.42	29.69	29.39	26.53	20.07	7.96	16.24
Merged-chr5-124551633-1	chr5	124551133	124552133	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1231.0	NM_001190795	67848.0	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	24.03	22.12	21.27	19.57	19.13	21.7	19.01	28.3	28.1
Merged-chr13-49364883-1	chr13	49364383	49365383	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039179, intron 1 of 6)	intron (NM_001039179, intron 1 of 6)	23334.0	NM_001039180	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	7.44	3.23	3.7	3.37	2.33	8.04	7.39	1.77	3.75
Merged-chr9-57659937-1	chr9	57659437	57660437	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6306.0	NM_001304761	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	3.43	1.38	1.85	1.35	1.87	1.61	1.06	1.77	3.12
Merged-chr18-68252112-1	chr18	68251612	68252612	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357444, intron 3 of 3)	intron (NM_001357444, intron 3 of 3)	8861.0	NR_106078	102465702.0		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	10.3	8.75	12.95	12.82	5.13	7.23	13.73	3.98	3.75
Merged-chr19-16048204-1	chr19	16047704	16048704	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63129.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	37.76	38.71	42.55	18.22	25.19	13.66	44.36	36.26	14.99
Merged-chr2-32550050-1	chr2	32549550	32550550	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153560, intron 1 of 10)	intron (NM_153560, intron 1 of 10)	14691.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	6.29	4.15	10.17	17.54	4.2	8.04	8.45	6.19	2.5
Merged-chr2-145744648-1	chr2	145744148	145745148	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41468.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	6.86	5.99	4.62	7.42	10.26	6.43	4.22	3.54	3.12
Merged-chr3-95893242-1	chr3	95892742	95893742	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146134)	promoter-TSS (NM_146134)	-679.0	NM_146104	226548.0	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	34.9	33.18	19.42	33.06	25.66	42.6	57.03	46.87	35.6
Merged-chr12-111738955-3	chr12	111738458	111739458	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	B3|SINE|B2	-19891.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	14.87	10.14	7.4	6.07	4.67	1.61	4.22	1.33	0.0
Merged-chr2-130578330-1	chr2	130577830	130578830	+	636.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2161.0	NM_011025	18429.0	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	5.15	3.23	0.0	4.05	1.4	1.61	3.17	0.44	2.5
Merged-chr7-123487901-2	chr7	123487407	123488407	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081329, intron 5 of 6)	ORR1D1-int|LTR|ERVL-MaLR	12719.0	NM_001081329	210162.0	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	7.44	2.76	5.55	5.4	7.0	4.02	5.28	2.65	2.5
Merged-chr3-81141032-1	chr3	81140532	81141532	+	636.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357746, intron 2 of 6)	URR1A|DNA|hAT-Charlie	104616.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	4.0	6.45	3.7	9.45	11.66	8.84	9.51	9.29	6.25
Merged-chr1-131138859-3	chr1	131138351	131139351	+	636.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145508)	promoter-TSS (NM_145508)	-617.0	NM_145508	226419.0	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	77.23	83.86	40.7	57.35	57.85	57.07	65.48	67.65	34.97
Merged-chr10-34416763-3	chr10	34416268	34417268	+	635.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176968, intron 1 of 11)	intron (NM_176968, intron 1 of 11)	1783.0	NM_176968	319638.0	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	33.18	20.74	16.65	26.31	17.73	39.39	23.24	37.58	12.49
Merged-chr16-56036093-2	chr16	56035599	56036599	+	635.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029092, intron 1 of 1)	intron (NM_029092, intron 1 of 1)	1675.0	NM_029092	52575.0	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	15.45	16.59	7.4	15.52	14.46	16.08	16.9	14.59	5.62
Merged-chr1-88283892-3	chr1	88283407	88284407	+	635.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6328.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	21.74	13.36	24.97	22.27	19.13	17.68	16.9	10.61	24.98
Merged-chr16-94207427-3	chr16	94206917	94207917	+	635.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 6 of 10)	MTB_Mm|LTR|ERVL-MaLR	82874.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	8.58	13.82	24.05	4.05	7.46	7.23	15.84	8.84	18.74
Merged-chr13-99299473-2	chr13	99298975	99299975	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	45203.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	10.3	3.69	3.7	6.07	6.06	4.82	1.06	3.54	5.0
Merged-chr2-4346336-2	chr2	4345828	4346828	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-54648.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	2.29	2.3	1.85	4.72	1.87	3.22	8.45	5.31	2.5
Merged-chr10-117848708-2	chr10	117848185	117849185	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2711.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	15.45	11.06	25.9	8.1	3.27	16.88	21.12	11.5	23.11
Merged-chrX-85879403-2	chrX	85878911	85879911	+	635.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163539, intron 1 of 1)	intron (NM_001163539, intron 1 of 1)	9138.0	NM_001163539	71398.0	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	31.46	25.34	16.65	16.19	16.33	18.49	23.24	24.76	16.24
Merged-chr2-103345496-2	chr2	103345002	103346002	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040332, intron 1 of 2)	intron (NR_040332, intron 1 of 2)	27262.0	NR_040332	319854.0	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	4.0	1.84	9.25	2.02	2.33	2.41	1.06	0.44	0.0
Merged-chr9-40343267-2	chr9	40342796	40343796	+	635.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_040728)	TTS (NR_040728)	2949.0	NM_001357623	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	16.02	14.75	12.95	8.1	8.86	4.82	4.22	9.29	5.0
Merged-chr2-26502829-5	chr2	26502364	26503364	+	635.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008714, intron 1 of 33)	CpG	958.0	NM_008714	18128.0	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	73.22	66.81	50.87	52.63	64.38	75.56	59.15	65.44	56.21
Merged-chr2-5942681-3	chr2	5942190	5943190	+	635.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001081131, exon 1 of 17)	5' UTR (NM_001081131, exon 1 of 17)	102.0	NM_001081131	209692.0	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	6.29	3.23	1.85	8.1	7.0	8.04	10.56	5.75	1.25
Merged-chr8-126693820-1	chr8	126693320	126694320	+	635.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-100384.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	1.72	3.69	6.47	4.72	3.73	5.63	5.28	2.21	5.0
Merged-chr3-115762847-1	chr3	115762347	115763347	+	635.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47792.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	59.49	84.32	42.55	74.89	90.04	90.02	73.93	75.61	64.33
Merged-chr12-21393986-1	chr12	21393486	21394486	+	635.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011739, intron 4 of 4)	MTD|LTR|ERVL-MaLR	-20354.0	NM_009615	11491.0	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	9.15	19.81	31.45	8.77	7.0	10.45	45.42	54.83	32.48
Merged-chr14-106194313-2	chr14	106193803	106194803	+	635.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	88105.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	9.15	11.52	9.25	7.42	6.06	12.86	4.22	5.31	3.75
Merged-chr3-37656420-2	chr3	37655916	37656916	+	635.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16469.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	9.72	9.22	11.1	5.4	4.67	3.22	2.11	1.33	2.5
Merged-chr14-74643493-2	chr14	74642992	74643992	+	635.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172812, intron 1 of 2)	intron (NM_172812, intron 1 of 2)	2618.0	NM_172812	15558.0	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	5.72	4.15	3.7	3.37	3.73	1.61	5.28	0.88	1.25
Merged-chr5-117667090-3	chr5	117666599	117667599	+	635.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	-199740.0	NM_008712	18125.0	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	6.86	3.69	1.85	9.45	0.47	9.65	2.11	3.54	8.74
Merged-chr10-18210885-1	chr10	18210385	18211385	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001195036)	promoter-TSS (NM_001195036)	5.0	NM_001195036	100045792.0	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	1.72	1.84	0.0	4.72	1.87	1.61	0.0	1.77	2.5
Merged-chr10-67538356-2	chr10	67537853	67538853	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010118, exon 1 of 2)	exon (NM_010118, exon 1 of 2)	423.0	NM_001347458	13654.0	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	45.19	31.79	23.12	37.78	17.26	20.9	22.18	21.67	6.25
Merged-chr2-30769384-1	chr2	30768884	30769884	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32353.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.0	2.3	12.02	7.42	5.13	0.8	2.11	3.54	1.25
Merged-chr17-17906128-2	chr17	17905628	17906628	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18304.0	NM_008039	14289.0	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	8.58	4.15	14.8	8.1	0.47	3.22	6.34	4.86	5.0
Merged-chr16-38693579-1	chr16	38693079	38694079	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	MTD|LTR|ERVL-MaLR	19456.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.0	3.69	0.0	3.37	4.2	4.82	7.39	7.07	3.75
Merged-chr1-51502390-2	chr1	51501874	51502874	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23975.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	21.17	17.05	14.8	20.92	24.26	18.49	25.35	10.61	28.1
Merged-chr4-42961790-3	chr4	42961287	42962287	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8159.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	3.43	4.61	3.7	2.02	2.8	4.82	3.17	0.44	3.75
Merged-chr2-174441744-1	chr2	174441244	174442244	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2705.0	NM_022325	64138.0	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	3.43	4.61	7.4	14.17	11.66	4.82	6.34	3.1	2.5
Merged-chr1-180421357-2	chr1	180420821	180421821	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081175, exon 7 of 8)	exon (NM_001081175, exon 7 of 8)	62183.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	12.01	5.07	3.7	8.77	2.8	4.82	6.34	3.54	7.49
Merged-chr5-140503190-2	chr5	140502681	140503681	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB7_1-LTR_MM|LTR|ERVK	-2428.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	10.87	7.83	24.05	8.77	5.6	12.86	14.79	11.94	8.12
Merged-chr17-46858422-2	chr17	46857890	46858890	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26977.0	NM_001100452	210982.0	Mm.37642	NM_001100452	ENSMUSG00000036568	Bicral	Gltscr1l|mKIAA0240	BRD4 interacting chromatin remodeling complex associated protein like	protein-coding	217.38	151.14	169.27	169.35	113.83	102.88	212.29	130.0	121.78
Merged-chr15-53288997-2	chr15	53288499	53289499	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	57184.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.01	5.99	2.77	4.05	6.06	8.04	7.39	3.54	2.5
Merged-chr6-82042273-2	chr6	82041739	82042739	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	611.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	28.6	16.59	12.95	48.58	49.45	15.27	4.22	3.98	2.5
Merged-chr15-88750264-2	chr15	88749745	88750745	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1466.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	14.3	18.43	5.55	13.49	7.46	9.65	16.9	11.94	3.75
Merged-chr6-125137510-2	chr6	125137013	125138013	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138747, intron 8 of 15)	intron (NM_138747, intron 8 of 15)	5630.0	NM_138747	110109.0	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	9.15	4.61	1.85	11.47	4.67	4.82	7.39	8.84	2.5
Merged-chr3-136165456-1	chr3	136164956	136165956	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033350, intron 7 of 16)	intron (NM_001033350, intron 7 of 16)	160610.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	8.01	5.07	9.25	5.4	9.33	12.06	7.39	5.75	9.37
Merged-chr11-94716951-2	chr11	94716428	94717428	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger1|DNA|TcMar-Tigger	-12429.0	NM_001007584	432589.0	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	-	predicted gene 11541	protein-coding	4.58	1.38	0.0	1.35	3.27	0.0	2.11	2.65	9.37
Merged-chr18-88911078-1	chr18	88910578	88911578	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16871.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	5.72	4.15	3.7	5.4	7.93	8.84	8.45	4.42	3.75
Merged-chr18-39253972-1	chr18	39253472	39254472	+	635.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	233273.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	11.44	17.51	12.02	11.47	14.46	17.68	9.51	12.82	8.74
Merged-chr17-33900896-2	chr17	33900379	33901379	+	635.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-4256.0	NR_040470	474160.0	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	13.73	10.6	3.7	13.49	10.26	16.88	14.79	14.15	12.49
Merged-chr10-57725696-2	chr10	57725203	57726203	+	635.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008863, intron 4 of 5)	MIRc|SINE|MIR	-59220.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	9.72	15.67	1.85	13.49	7.0	14.47	17.96	9.29	14.99
Merged-chr17-51814569-2	chr17	51814045	51815045	+	635.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2361.0	NM_001357636	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.0	9.22	3.7	3.37	4.67	1.61	1.06	5.31	1.87
Merged-chr7-104231399-2	chr7	104230900	104231900	+	635.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013616, intron 5 of 7)	intron (NM_001013616, intron 5 of 7)	12605.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	5.72	2.3	3.7	6.07	3.27	1.61	5.28	2.65	0.0
Merged-chr5-117494202-2	chr5	117493700	117494700	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	80198.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	53.77	40.09	24.05	58.03	49.92	54.66	68.65	75.61	40.59
Merged-chr1-132390376-2	chr1	132389848	132390848	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311107)	promoter-TSS (NM_001311107)	-30.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	5.15	5.53	5.55	14.17	8.4	4.82	3.17	0.88	7.49
Merged-chr1-135724381-2	chr1	135723887	135724887	+	635.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360782, intron 1 of 5)	intron (NM_001360782, intron 1 of 5)	4324.0	NM_001360782	13007.0	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	18.31	11.52	9.25	4.05	2.33	6.43	11.62	3.98	9.99
Merged-chr2-52901024-2	chr2	52900515	52901515	+	635.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	Lx8|LINE|L1	43147.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	15.45	16.13	18.5	19.57	14.46	28.13	13.73	9.73	22.48
Merged-chr11-48903110-1	chr11	48902610	48903610	+	635.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024230)	promoter-TSS (NM_001024230)	-958.0	NM_001024230	432555.0	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	41.19	44.7	46.25	26.31	37.32	28.94	48.58	45.54	31.85
Merged-chr14-103844487-1	chr14	103843987	103844987	+	635.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007904)	promoter-TSS (NM_007904)	-11.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	1.72	9.22	5.55	8.1	10.73	14.47	8.45	5.31	1.25
Merged-chr17-79580435-3	chr17	79579941	79580941	+	635.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34459.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	5.15	3.23	0.0	4.05	2.33	1.61	0.0	0.88	1.25
Merged-chr9-23581181-1	chr9	23580681	23581681	+	635.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	358105.0	NM_028472	73230.0	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	5.15	2.76	5.55	4.72	4.2	4.82	3.17	3.1	7.49
Merged-chr17-31047812-2	chr17	31047312	31048312	+	635.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-9882.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	46.34	48.84	27.75	62.75	54.58	73.95	48.58	72.07	28.1
Merged-chr11-107512100-3	chr11	107511591	107512591	+	635.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	32563.0	NM_025894	66997.0	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	5.15	5.53	5.55	5.4	1.4	4.02	3.17	1.33	5.0
Merged-chr1-58873149-3	chr1	58872654	58873654	+	635.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	70652.0	NM_001277926	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	4.58	2.76	5.55	2.7	6.53	6.43	3.17	5.75	5.62
Merged-chr19-16009846-3	chr19	16009350	16010350	+	635.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24775.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	31.46	29.95	52.72	22.94	32.19	35.37	50.7	44.66	43.72
Merged-chr4-62359457-3	chr4	62358894	62359894	+	635.055542	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	1202.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	97.25	122.11	65.67	91.76	69.51	71.54	104.56	111.43	76.82
Merged-chr6-38066363-1	chr6	38065863	38066863	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080467, intron 14 of 20)	intron (NM_080467, intron 14 of 20)	-19367.0	NM_177200	320590.0	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	9.72	9.68	2.77	13.49	7.46	1.61	6.34	6.19	1.25
Merged-chr5-150601394-1	chr5	150600894	150601894	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001362416, exon 8 of 8)	3' UTR (NM_001362416, exon 8 of 8)	-6869.0	NM_133898	100637.0	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	120.13	108.75	77.7	116.73	80.24	88.42	69.71	68.98	53.71
Merged-chr10-79866069-1	chr10	79865569	79866569	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181681, exon 7 of 7)	exon (NM_181681, exon 7 of 7)	3482.0	NR_105875	102465549.0		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	8.58	1.84	7.4	6.07	2.8	8.04	5.28	3.54	5.62
Merged-chr9-89872337-2	chr9	89871811	89872811	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37464.0	NM_001357744	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	1.72	4.15	1.85	2.02	3.27	2.41	4.22	1.77	4.37
Merged-chr13-40869253-1	chr13	40868753	40869753	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023887, intron 1 of 2)	intron (NM_023887, intron 1 of 2)	9485.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	3.43	3.69	0.0	6.75	3.73	3.22	2.11	0.88	3.75
Merged-chr16-95825849-1	chr16	95825349	95826349	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72864.0	NR_040485	69776.0	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	13.73	7.37	3.7	12.14	10.26	3.22	10.56	6.63	9.99
Merged-chr17-84204288-1	chr17	84203788	84204788	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 36 of 37)	ORR1D2|LTR|ERVL-MaLR	-16341.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	12.59	9.22	9.25	10.12	3.27	8.04	11.62	2.21	7.49
Merged-chr2-118016015-1	chr2	118015515	118016515	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_126479, intron 8 of 9)	ORR1D2|LTR|ERVL-MaLR	95187.0	NR_126479	329496.0	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24	predicted gene 13986	ncRNA	10.3	4.61	7.4	12.14	7.46	8.04	5.28	0.88	6.87
Merged-chr10-40489274-1	chr10	40488774	40489774	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81088.0	NM_027572	70840.0	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	25.74	45.16	27.75	44.53	57.85	28.94	33.8	33.6	17.49
Merged-chr5-115474485-1	chr5	115473985	115474985	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_151517, intron 2 of 2)	intron (NR_151517, intron 2 of 2)	8343.0	NM_001356587	18778.0	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	9.72	11.52	1.85	12.82	12.13	0.0	6.34	3.98	4.37
Merged-chr4-44173351-2	chr4	44172837	44173837	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5054.0	NM_001038993	73469.0	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	5.72	3.23	3.7	5.4	1.87	1.61	0.0	1.33	6.25
Merged-chr3-88775288-1	chr3	88774788	88775788	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1769.0	NR_028359	100302730.0	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	65.79	50.69	42.55	64.77	39.65	25.72	65.48	75.61	31.85
Merged-chr1-6467167-1	chr1	6466667	6467667	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20064.0	NM_001244693	240690.0	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	5.15	2.3	1.85	2.7	1.87	7.23	2.11	1.33	3.75
Merged-chr16-24946604-1	chr16	24946104	24947104	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-113035.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.86	10.14	0.0	7.42	8.86	13.66	14.79	7.96	8.74
Merged-chr10-3944087-1	chr10	3943587	3944587	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-28988.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	8.01	8.75	1.85	4.05	2.8	0.0	1.06	3.1	1.25
Merged-chr8-120404761-1	chr8	120404261	120405261	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84105.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	2.29	2.3	5.55	2.7	0.0	0.8	3.17	0.88	1.25
Merged-chr1-151572820-2	chr1	151572313	151573313	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	Lx4A|LINE|L1	1440.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	75.51	70.5	31.45	101.21	48.05	69.13	132.02	99.93	49.34
Merged-chr16-87652668-1	chr16	87652168	87653168	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-46286.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	70.36	33.18	15.72	62.07	35.45	27.33	39.08	34.49	4.37
Merged-chrX-36552488-1	chrX	36551988	36552988	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45705.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	5.72	4.61	0.0	3.37	1.87	1.61	2.11	1.77	2.5
Merged-chr1-152529813-1	chr1	152529313	152530313	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 14 of 17)	intron (NM_016846, intron 14 of 17)	95404.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	144.73	144.23	141.52	131.57	87.7	112.53	163.71	145.03	99.3
Merged-chr5-140648110-1	chr5	140647610	140648610	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308040, intron 1 of 12)	intron (NM_001308040, intron 1 of 12)	921.0	NM_001308040	78339.0	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	64.64	50.23	63.82	56.68	53.18	43.4	85.55	77.38	35.6
Merged-chr15-25302541-1	chr15	25302041	25303041	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	111223.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	205.37	237.3	112.84	255.72	283.64	145.49	256.65	307.75	136.15
Merged-chr3-75553313-2	chr3	75552826	75553826	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019745, intron 1 of 7)	intron (NM_019745, intron 1 of 7)	3526.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	22.31	13.82	14.8	9.45	9.8	13.66	14.79	12.38	12.49
Merged-chrX-162828269-1	chrX	162827769	162828769	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290777, intron 1 of 5)	intron (NM_001290777, intron 1 of 5)	1185.0	NM_001290776	353170.0	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	10.87	25.34	24.97	18.22	16.33	29.74	22.18	26.97	23.11
Merged-chr1-85652069-1	chr1	85651569	85652569	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013673, intron 1 of 19)	RSINE1|SINE|B4	2081.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	14.3	19.35	7.4	23.62	21.46	15.27	16.9	21.67	10.62
Merged-chr10-61683054-1	chr10	61682554	61683554	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358488, intron 2 of 7)	intron (NM_001358488, intron 2 of 7)	-2764.0	NR_126477	75539.0		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	14.3	20.27	12.02	11.47	7.93	8.84	14.79	11.94	9.37
Merged-chr11-63402930-1	chr11	63402430	63403430	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	270127.0	NM_001302260	18858.0	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	1.72	4.15	1.85	2.7	1.4	1.61	3.17	4.86	5.0
Merged-chr3-8691193-1	chr3	8690693	8691693	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24155.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	12.59	4.15	2.77	10.12	9.8	7.23	6.34	6.19	7.49
Merged-chr4-152008299-1	chr4	152007799	152008799	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033352)	promoter-TSS (NM_001033352)	-592.0	NM_001033352	242785.0	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	57.78	50.69	48.1	53.3	65.31	60.28	51.75	49.08	23.73
Merged-chr17-50995974-1	chr17	50995474	50996474	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	163404.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	38.9	50.69	43.47	23.62	32.66	32.96	36.97	50.41	33.72
Merged-chr19-61097915-1	chr19	61097415	61098415	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131953, intron 3 of 6)	intron (NR_131953, intron 3 of 6)	42925.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	4.58	3.23	1.85	8.1	1.4	0.0	0.0	0.44	6.25
Merged-chr3-142708227-1	chr3	142707727	142708727	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173763, intron 2 of 13)	RLTR45|LTR|ERVK	7179.0	NM_001293560	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	12.01	5.07	4.62	6.07	5.13	12.86	14.79	15.03	6.87
Merged-chr11-54070015-1	chr11	54069515	54070515	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019417)	promoter-TSS (NM_019417)	-998.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	5.72	5.53	7.4	3.37	3.73	4.82	7.39	4.42	0.0
Merged-chr18-68143085-1	chr18	68142585	68143585	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	L1_Mur3|LINE|L1	-84861.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.01	6.45	0.92	9.45	8.86	8.04	3.17	3.54	1.25
Merged-chr11-109441280-1	chr11	109440780	109441780	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040680, intron 1 of 1)	B3|SINE|B2	1202.0	NR_040680	100503496.0	Mm.265874	NR_040680		Gm45916	-	predicted gene, 45916	ncRNA	4.58	2.76	0.0	6.07	4.2	4.82	0.0	6.19	3.75
Merged-chr4-117537192-1	chr4	117536692	117537692	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13132.0	NM_001356404	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	2.86	2.3	5.55	8.77	3.73	4.82	3.17	3.98	12.49
Merged-chr15-78268037-2	chr15	78267548	78268548	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16801.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	5.15	2.3	8.32	5.4	3.27	0.8	2.11	2.21	3.75
Merged-chr12-102703334-1	chr12	102702834	102703834	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 1 of 9)	intron (NM_172584, intron 1 of 9)	1535.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	41.76	35.02	60.12	26.99	22.86	36.97	43.3	36.26	38.1
Merged-chr5-44127722-1	chr5	44127222	44128222	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25986.0	NM_001163577	19126.0	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	4.0	4.61	13.87	2.7	3.27	9.65	0.0	1.77	1.25
Merged-chr9-41044768-1	chr9	41044268	41045268	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 4 of 13)	intron (NM_176860, intron 4 of 13)	34738.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	1.14	4.15	1.85	5.4	5.13	0.0	6.34	2.21	8.74
Merged-chr17-72814148-2	chr17	72813670	72814670	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22458.0	NM_027166	383295.0	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	1.72	2.3	1.85	6.07	1.4	1.61	4.22	0.44	3.75
Merged-chr11-102604254-1	chr11	102603754	102604754	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020510)	promoter-TSS (NM_020510)	-177.0	NM_020510	57265.0	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	2.86	1.84	1.85	2.7	2.8	1.61	5.28	3.54	1.25
Merged-chr5-43846556-1	chr5	43846056	43847056	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-22253.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	20.02	19.35	10.17	13.49	7.46	25.72	20.07	16.8	19.36
Merged-chr14-51931011-2	chr14	51930517	51931517	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8244.0	NM_001011687	497071.0	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	3.43	2.76	0.0	6.07	3.27	2.41	4.22	3.1	4.37
Merged-chr4-48051823-1	chr4	48051323	48052323	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001307989, exon 1 of 3)	exon (NM_001307989, exon 1 of 3)	577.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	2.86	0.92	0.0	2.7	0.93	0.0	1.06	0.88	3.75
Merged-chr4-155869045-1	chr4	155868545	155869545	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028020)	promoter-TSS (NM_028020)	395.0	NM_024472	79554.0	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	18.31	22.58	11.1	26.99	20.53	24.11	20.07	18.13	8.74
Merged-chrX-48461049-1	chrX	48460549	48461549	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	2083.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	26.31	20.27	16.65	16.19	4.67	11.25	48.58	29.18	21.86
Merged-chr7-30669391-3	chr7	30668828	30669828	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51A_Mm|LTR|ERVK?	2277.0	NR_027849	74927.0	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	3.43	3.23	1.85	5.4	3.27	6.43	2.11	0.88	1.87
Merged-chr14-48590615-1	chr14	48590115	48591115	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72119.0	NM_001360226	18424.0	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	6.86	8.75	3.7	20.92	21.46	4.02	0.0	0.88	0.0
Merged-chrX-38642356-1	chrX	38641856	38642856	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7213.0	NM_021550	59048.0	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	4.58	1.84	0.0	2.7	0.93	3.22	2.11	0.44	0.0
Merged-chr9-45093966-1	chr9	45093466	45094466	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005421, intron 6 of 10)	(TG)n|Simple_repeat|Simple_repeat	14783.0	NM_001005421	270152.0	Mm.190461	NM_001005421	ENSMUSG00000048534	Jaml	AMICA|Amica1|Crea7|Gm638	junction adhesion molecule like	protein-coding	32.61	17.97	22.2	33.74	16.79	36.17	2.11	4.86	2.5
Merged-chr19-12805870-1	chr19	12805370	12806370	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 2 of 8)	L2|LINE|L2	7291.0	NM_134152	107321.0	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	52.06	57.14	49.02	56.68	46.18	54.66	39.08	29.18	22.48
Merged-chr2-52537772-1	chr2	52537272	52538272	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037099, intron 2 of 13)	intron (NM_001037099, intron 2 of 13)	20839.0	NM_146123	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	5.15	1.84	3.7	4.72	2.33	1.61	2.11	1.33	1.25
Merged-chr10-53471441-1	chr10	53470941	53471941	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS4|LTR|ERV1	47548.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	4.58	3.69	1.85	2.7	3.27	4.02	11.62	5.31	6.25
Merged-chr7-29380633-1	chr7	29380133	29381133	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081028, intron 9 of 22)	L1ME3Cz|LINE|L1	76628.0	NM_013874	29861.0	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	1.72	1.38	7.4	2.7	3.73	4.02	3.17	1.33	5.0
Merged-chr18-70580840-1	chr18	70580340	70581340	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010773, intron 2 of 6)	intron (NM_010773, intron 2 of 6)	12548.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	4.0	1.38	3.7	0.67	2.33	6.43	1.06	2.65	8.12
Merged-chr11-107467357-1	chr11	107466857	107467857	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153311, intron 1 of 9)	intron (NR_153311, intron 1 of 9)	3363.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	40.04	46.54	35.15	72.87	50.38	52.25	100.34	76.94	54.96
Merged-chr6-66964399-1	chr6	66963899	66964899	+	635.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	67508.0	NM_001177558	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.86	5.53	7.4	3.37	2.8	1.61	3.17	2.21	8.12
Merged-chr13-49108231-1	chr13	49107731	49108731	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 2 of 29)	intron (NM_001290313, intron 2 of 29)	40097.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	2.86	3.23	0.0	1.35	6.06	6.43	13.73	4.86	3.75
Merged-chr15-41163034-1	chr15	41162534	41163534	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10667.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	5.15	3.23	3.7	0.67	1.4	2.41	1.06	4.86	1.25
Merged-chr11-100169265-1	chr11	100168765	100169765	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23339.0	NM_008471	16669.0	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.57	1.38	1.85	0.67	2.8	1.61	1.06	0.44	0.0
Merged-chr10-121641856-1	chr10	121641356	121642356	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177335, exon 1 of 13)	exon (NM_177335, exon 1 of 13)	155.0	NM_177335	216393.0	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	6.86	1.38	0.0	4.05	3.73	5.63	3.17	0.44	1.25
Merged-chr13-9611417-1	chr13	9610917	9611917	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 22 of 36)	intron (NM_001081426, intron 22 of 36)	152393.0	NM_001347471	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	11.44	5.07	13.87	4.72	5.13	4.82	7.39	2.21	1.25
Merged-chr7-80091180-1	chr7	80090680	80091680	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001146000, exon 6 of 6)	3' UTR (NM_001146000, exon 6 of 6)	-15923.0	NR_045695	100859962.0	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	29.75	23.04	22.2	20.92	10.73	19.29	20.07	19.46	24.36
Merged-chr1-138841792-1	chr1	138841292	138842292	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025565, intron 1 of 4)	CpG	652.0	NM_001042577	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	2.86	1.38	1.85	2.7	0.0	0.0	0.0	0.0	2.5
Merged-chr17-43303311-1	chr17	43302811	43303811	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133776, intron 8 of 15)	intron (NM_133776, intron 8 of 15)	32964.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.58	2.3	9.25	7.42	1.4	4.82	5.28	3.54	1.87
Merged-chrX-104483204-1	chrX	104482704	104483704	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081189, exon 1 of 7)	exon (NM_001081189, exon 1 of 7)	422.0	NM_001081189	331487.0	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	21.74	18.89	35.15	30.36	18.19	29.74	28.52	17.69	22.48
Merged-chr9-122120254-1	chr9	122119754	122120754	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	2795.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	7.44	10.6	9.25	7.42	1.87	8.04	12.67	8.84	5.0
Merged-chr13-29290792-1	chr13	29290292	29291292	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 15 of 16)	intron (NR_131896, intron 15 of 16)	274537.0	NR_045075	77920.0	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	9.15	5.53	12.95	6.75	7.93	4.82	22.18	17.69	6.25
Merged-chr15-25364739-2	chr15	25364236	25365236	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027395, exon 2 of 2)	exon (NM_027395, exon 2 of 2)	49028.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	45.19	12.44	27.75	91.76	34.52	38.58	65.48	33.6	34.97
Merged-chr6-87840622-2	chr6	87840130	87841130	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1871.0	NM_133934	57905.0	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	12.59	13.36	18.5	14.17	10.26	4.02	17.96	9.29	13.74
Merged-chr11-75158736-1	chr11	75158236	75159236	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 16 of 18)	intron (NM_001002764, intron 16 of 18)	9416.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	7.44	5.99	18.5	8.77	3.73	16.08	6.34	0.88	9.99
Merged-chr11-6273876-1	chr11	6273376	6274376	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134020, exon 4 of 5)	exon (NM_134020, exon 4 of 5)	961.0	NM_134020	103694.0	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	19.45	17.51	9.25	16.87	18.66	20.09	20.07	11.94	12.49
Merged-chr15-64031877-1	chr15	64031377	64032377	+	635.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	27887.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.58	15.21	17.57	15.52	12.13	14.47	16.9	14.59	15.61
Merged-chr12-54317297-1	chr12	54316797	54317797	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74021.0	NR_033689	665239.0	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	1.72	1.38	5.55	0.67	4.67	0.0	4.22	1.33	2.5
Merged-chr7-4227086-1	chr7	4226586	4227586	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-10668.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	32.74	17.69	24.98
Merged-chr4-154927600-1	chr4	154927100	154928100	+	635.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178931, intron 1 of 7)	intron (NM_178931, intron 1 of 7)	477.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	105.83	144.23	117.47	82.99	93.3	94.85	191.17	199.42	117.41
Merged-chr3-152111209-2	chr3	152110720	152111720	+	634.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016867, intron 3 of 5)	intron (NM_016867, intron 3 of 5)	54680.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	2.29	2.76	0.0	4.05	3.73	4.82	3.17	2.21	1.25
Merged-chr1-74313505-2	chr1	74313015	74314015	+	634.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9179.0	NM_027154	69660.0	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	5.72	4.61	0.0	8.77	1.87	1.61	6.34	3.98	4.37
Merged-chr15-5739794-2	chr15	5739299	5740299	+	634.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	243481.0	NR_045274	71432.0	Mm.291087	NR_045274	ENSMUSG00000110018	5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	8.58	8.29	2.77	11.47	7.46	8.04	13.73	7.52	5.0
Merged-chr3-81099443-1	chr3	81098943	81099943	+	634.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	RSINE1|SINE|B4	63027.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	26.31	39.17	37.0	26.31	19.13	32.15	20.07	25.2	21.23
Merged-chr7-129307147-2	chr7	129306648	129307648	+	634.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080963, intron 1 of 6)	intron (NM_001080963, intron 1 of 6)	50054.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	14.3	7.37	11.1	4.05	5.13	3.22	9.51	15.03	5.0
Merged-chr5-100569506-2	chr5	100568994	100569994	+	634.700012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	2711.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	53.77	73.26	67.52	40.48	35.92	39.39	137.3	123.36	63.08
Merged-chr5-106802571-3	chr5	106802100	106803100	+	634.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-105770.0	NM_026856	52397.0	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	3.43	3.23	0.0	0.0	0.47	5.63	7.39	1.33	3.75
Merged-chr7-126628213-1	chr7	126627713	126628713	+	634.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2743.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	2.29	0.46	7.4	4.72	5.13	14.47	7.39	1.33	12.49
Merged-chr12-26311719-1	chr12	26311219	26312219	+	634.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080563, intron 8 of 8)	intron (NM_080563, intron 8 of 8)	-34991.0	NR_130981	75243.0	Mm.444753	NR_130981	ENSMUSG00000114048	4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	2.86	2.76	1.85	2.7	2.8	4.02	3.17	0.44	0.0
Merged-chr4-152096201-2	chr4	152095710	152096710	+	634.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285999)	promoter-TSS (NM_001285999)	-509.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	2.29	1.38	0.92	0.0	1.4	0.0	2.11	0.44	3.75
Merged-chr1-92641301-2	chr1	92640795	92641795	+	634.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163425, intron 1 of 2)	intron (NM_001163425, intron 1 of 2)	653.0	NR_028108	66915.0	Mm.30179	NM_001163425	ENSMUSG00000073616	Cops9	1110002M09Rik|Myeov2	COP9 signalosome subunit 9	protein-coding	178.48	155.75	178.52	199.72	168.88	185.68	223.91	215.34	89.31
Merged-chr5-43883860-2	chr5	43883376	43884376	+	634.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	15067.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	126.42	146.99	88.8	109.98	88.17	156.74	124.63	135.3	85.56
Merged-chr1-92906132-3	chr1	92905610	92906610	+	634.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175118)	promoter-TSS (NM_175118)	-879.0	NM_175118	67446.0	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	14.87	22.12	23.12	10.8	8.86	8.04	26.4	35.82	26.23
Merged-chr10-19527493-1	chr10	19526993	19527993	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	32850.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	5.72	7.37	6.47	4.72	5.13	6.43	8.45	1.77	3.75
Merged-chr6-142346323-1	chr6	142345823	142346823	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183165, intron 1 of 11)	intron (NM_183165, intron 1 of 11)	626.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	28.6	33.64	24.97	31.71	43.85	42.6	36.97	44.66	26.85
Merged-chr2-37757158-1	chr2	37756658	37757658	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19091.0	NM_001163566	241324.0	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	2.86	2.3	0.0	6.07	0.93	4.82	2.11	1.33	1.25
Merged-chr16-78302513-1	chr16	78302013	78303013	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025192, intron 1 of 6)	intron (NM_001025192, intron 1 of 6)	842.0	NM_001276263	13052.0	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	8.58	4.15	1.85	8.1	3.73	3.22	7.39	2.65	2.5
Merged-chr15-37906279-2	chr15	37905767	37906767	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54589.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.57	2.76	9.25	2.02	4.2	0.0	5.28	3.1	6.25
Merged-chr15-10885766-1	chr15	10885266	10886266	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	56715.0	NR_040357	100502601.0	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	5.72	4.61	9.25	7.42	4.67	11.25	3.17	3.98	7.49
Merged-chr3-59220189-1	chr3	59219689	59220689	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357007, intron 1 of 2)	intron (NM_001357007, intron 1 of 2)	-9307.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	40.62	69.12	40.7	55.33	63.45	53.05	74.99	91.97	41.22
Merged-chr14-58322721-1	chr14	58322221	58323221	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	250035.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	19.45	18.43	10.17	21.59	17.26	37.78	31.69	25.2	18.74
Merged-chr1-179760809-2	chr1	179760308	179761308	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026375, intron 29 of 35)	B1_Mus1|SINE|Alu	43207.0	NM_026375	226747.0	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	16.59	11.06	12.02	18.89	8.86	7.23	11.62	8.4	9.99
Merged-chr7-110242185-2	chr7	110241690	110242690	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009302, intron 1 of 11)	intron (NM_009302, intron 1 of 11)	20487.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	14.3	7.37	13.87	14.84	9.33	7.23	7.39	10.17	0.0
Merged-chr6-65126314-1	chr6	65125814	65126814	+	634.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019455, intron 4 of 5)	intron (NM_019455, intron 4 of 5)	18416.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	5.15	2.76	0.0	4.72	6.06	1.61	2.11	6.19	5.62
Merged-chr4-150438820-3	chr4	150438335	150439335	+	634.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 3 of 22)	intron (NM_001085492, intron 3 of 22)	156919.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	8.01	6.45	4.62	1.35	3.73	4.02	12.67	9.29	11.24
Merged-chr2-29670880-2	chr2	29670365	29671365	+	634.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	51145.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	17.73	19.81	14.8	12.82	6.06	12.06	12.67	15.03	8.74
Merged-chr17-8372890-2	chr17	8372385	8373385	+	634.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161832, intron 1 of 10)	intron (NM_001161832, intron 1 of 10)	489.0	NM_001161832	21331.0	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	2.86	4.15	0.92	3.37	0.93	4.02	5.28	0.44	2.5
Merged-chr2-170153016-1	chr2	170152516	170153516	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-10341.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	82.38	67.74	51.8	102.56	66.71	98.06	118.29	138.4	69.32
Merged-chr8-126873374-1	chr8	126872874	126873874	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	24354.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	238.55	177.4	110.07	214.56	164.68	107.71	185.89	205.61	98.68
Merged-chr6-22418492-1	chr6	22417992	22418992	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62411.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	6.86	3.69	5.55	2.02	8.4	12.86	7.39	1.77	8.12
Merged-chr13-20728268-1	chr13	20727768	20728768	+	634.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65845.0	NM_001281854	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	6.86	2.76	2.77	4.72	3.73	4.02	4.22	1.33	0.62
Merged-chr11-25849406-1	chr11	25848906	25849906	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 2 of 5)	intron (NR_027973, intron 2 of 5)	-352834.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.86	3.23	5.55	14.17	12.6	9.65	8.45	6.63	11.24
Merged-chr4-130816900-1	chr4	130816400	130817400	+	634.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011520, exon 2 of 5)	exon (NM_011520, exon 2 of 5)	24363.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	16.59	21.2	33.3	18.22	28.92	46.62	60.2	42.01	25.61
Merged-chr8-121652180-3	chr8	121651651	121652651	+	634.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080855)	promoter-TSS (NM_080855)	-218.0	NM_080855	142682.0	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	10.87	6.91	17.57	9.45	9.33	6.43	12.67	1.77	3.75
Merged-chr1-194978245-1	chr1	194977745	194978745	+	634.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1286.0	NR_033564	320400.0	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	9.15	11.06	5.55	20.92	14.93	15.27	7.39	6.19	8.12
Merged-chr11-115047224-2	chr11	115046764	115047764	+	634.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199201, intron 1 of 3).2	B4A|SINE|B4	1031.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	124.14	130.86	116.54	76.92	69.51	69.13	41.19	40.68	8.12
Merged-chr12-110738568-1	chr12	110738068	110739068	+	634.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	CpG	636.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	97.25	80.18	69.37	115.38	112.43	86.01	130.97	111.43	40.59
Merged-chr6-124724609-1	chr6	124724109	124725109	+	634.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077705, intron 11 of 15)	intron (NM_001077705, intron 11 of 15)	-6219.0	NR_029792	723944.0		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	54.35	50.23	64.75	44.53	40.12	62.7	63.37	68.98	51.21
Merged-chr9-99242252-3	chr9	99241741	99242741	+	634.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1100.0	NM_023873	68121.0	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	15.45	18.43	7.4	11.47	11.2	8.04	23.24	15.48	8.12
Merged-chr11-94329680-2	chr11	94329166	94330166	+	634.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027799, intron 1 of 4)	intron (NM_027799, intron 1 of 4)	1665.0	NM_146024	71452.0	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	10.87	11.52	9.25	12.14	15.86	11.25	15.84	14.15	16.86
Merged-chr16-55858680-2	chr16	55858175	55859175	+	634.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 4 of 5)	intron (NM_001134457, intron 4 of 5)	-20034.0	NM_001159395	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.72	3.23	0.0	4.72	5.6	1.61	2.11	2.21	2.5
Merged-chr2-158310864-2	chr2	158310389	158311389	+	634.049988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008489, intron 3 of 14)	intron (NM_008489, intron 3 of 14)	4396.0	NM_008489	16803.0	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	18.88	18.89	7.4	2.02	0.47	6.43	27.46	19.46	11.87
Merged-chrX-164454396-1	chrX	164453896	164454896	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001313737, exon 5 of 7)	exon (NM_001313737, exon 5 of 7)	17402.0	NM_001313737	68854.0	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.0	0.46	2.77	1.35	1.87	1.61	1.06	2.65	1.87
Merged-chr2-6295233-1	chr2	6294733	6295733	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	intron (NR_040333, intron 4 of 6)	-27524.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	10.3	5.53	14.8	10.8	7.93	9.65	12.67	8.4	10.62
Merged-chr4-88214108-1	chr4	88213608	88214608	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 11 of 43)	RMER15|LTR|ERVL	92068.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	1.14	1.84	7.4	8.1	7.0	0.0	2.11	5.31	2.5
Merged-chr6-67532824-1	chr6	67532324	67533324	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2998.0	NM_020047	56753.0	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	1.72	1.84	1.85	4.72	2.33	3.22	1.06	3.1	0.0
Merged-chrX-98938828-1	chrX	98938328	98939328	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207633, intron 1 of 6)	intron (NM_207633, intron 1 of 6)	1047.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	90.96	73.26	83.25	78.27	82.57	51.44	71.82	108.77	46.22
Merged-chr19-41317826-1	chr19	41317326	41318326	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 8 of 16)	intron (NM_031376, intron 8 of 16)	-53822.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	11.44	5.99	16.65	3.37	7.46	20.09	9.51	3.1	12.49
Merged-chr10-60933950-1	chr10	60933450	60934450	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033616, intron 1 of 2)	intron (NR_033616, intron 1 of 2)	4182.0	NR_033616	73616.0	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	21.17	13.36	10.17	66.8	55.51	54.66	95.06	53.94	49.96
Merged-chr4-3835018-1	chr4	3834518	3835518	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026147, intron 2 of 3)	intron (NM_026147, intron 2 of 3)	637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	120.13	121.65	92.5	79.62	81.64	121.37	122.52	125.13	103.67
Merged-chr2-19659192-1	chr2	19658692	19659692	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027715, exon 1 of 1)	exon (NM_027715, exon 1 of 1)	1130.0	NM_027715	71198.0	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	72.65	77.87	58.27	52.63	49.92	42.6	65.48	63.67	57.46
Merged-chr12-33311883-1	chr12	33311383	33312383	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	9368.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	45.76	51.15	51.8	57.35	32.66	52.25	66.54	55.71	31.23
Merged-chr3-69257267-1	chr3	69256767	69257767	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34848.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.15	1.38	0.92	2.02	4.67	3.22	2.11	2.21	1.25
Merged-chr7-109671730-1	chr7	109671230	109672230	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32007.0	NM_020616	57373.0	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	2.86	3.69	1.85	4.05	1.87	1.61	4.22	3.1	8.74
Merged-chr12-31826052-1	chr12	31825552	31826552	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163126, intron 11 of 22)	intron (NM_001163126, intron 11 of 22)	-112126.0	NM_175191	73010.0	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	1.14	1.84	0.0	0.0	2.8	4.82	2.11	1.33	5.0
Merged-chr4-84079083-1	chr4	84078583	84079583	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34204.0	NR_130998	78238.0	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	26.89	19.81	24.97	25.64	33.59	33.76	1.06	2.21	1.87
Merged-chr10-75330325-1	chr10	75329825	75330825	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009630, intron 2 of 2)	intron (NM_009630, intron 2 of 2)	5467.0	NM_001331096	11540.0	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	5.15	3.23	3.7	4.72	1.4	0.0	3.17	1.33	0.0
Merged-chr8-85499340-1	chr8	85498840	85499840	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173866, intron 2 of 11)	B3A|SINE|B2	6723.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	13.16	11.98	25.9	14.84	3.27	12.06	7.39	4.86	11.24
Merged-chr13-91452476-1	chr13	91451976	91452976	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8621.0	NM_024272	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	8.01	2.3	3.7	10.12	8.4	17.68	2.11	3.1	3.75
Merged-chr12-106026990-1	chr12	106026490	106027490	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 1 of 13)	intron (NM_001029843, intron 1 of 13)	16727.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	8.01	11.98	12.95	14.84	10.26	11.25	12.67	4.86	13.74
Merged-chr16-31366652-1	chr16	31366152	31367152	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41362.0	NR_155301	102636590.0	Mm.45825	NR_155301		AV205837	-	expressed sequence AV205837	ncRNA	8.01	5.07	3.7	10.12	4.67	4.02	5.28	1.77	1.25
Merged-chr12-91869461-1	chr12	91868961	91869961	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20304.0	NM_011344	20338.0	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	1.72	0.92	5.55	4.05	3.27	1.61	4.22	1.77	3.75
Merged-chr8-70503212-1	chr8	70502712	70503712	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018827, intron 6 of 8)	intron (NM_018827, intron 6 of 8)	3214.0	NR_151646	66462.0	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	5.15	4.15	1.85	4.72	1.87	0.0	2.11	2.21	1.25
Merged-chr15-8038019-1	chr15	8037519	8038519	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081402, intron 7 of 17)	intron (NM_001081402, intron 7 of 17)	61190.0	NM_001358788	545085.0	Mm.321312	NM_001081402	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	3.43	2.3	3.7	4.05	0.93	1.61	3.17	1.77	4.37
Merged-chr17-70836781-1	chr17	70836281	70837281	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	9996.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	36.61	25.34	37.92	10.12	7.93	12.06	8.45	14.15	8.74
Merged-chr18-20740287-1	chr18	20739787	20740787	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	6117.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	22.88	23.04	25.9	66.8	29.39	33.76	19.01	21.67	11.24
Merged-chr4-129086258-2	chr4	129085741	129086741	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19289.0	NM_025452	66260.0	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	5.72	1.84	3.7	4.72	2.8	8.04	2.11	3.1	7.49
Merged-chr19-5640192-1	chr19	5639692	5640692	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009045, intron 5 of 10)	intron (NM_009045, intron 5 of 10)	2702.0	NM_009045	19697.0	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	15.45	12.44	19.42	9.45	8.4	18.49	5.28	16.8	8.74
Merged-chr4-93584696-1	chr4	93584196	93585196	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx3B|LINE|L1	-249185.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	3.43	2.3	3.7	2.7	1.4	3.22	2.11	0.44	8.12
Merged-chr11-113763518-1	chr11	113763018	113764018	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11703.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.58	2.3	3.7	2.02	2.33	1.61	7.39	7.07	5.0
Merged-chr2-166564063-2	chr2	166563569	166564569	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_152154)	promoter-TSS (NR_152154)	-453.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	4.58	2.3	3.7	11.47	5.13	1.61	10.56	2.21	0.62
Merged-chr15-42835019-1	chr15	42834519	42835519	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158042.0	NM_009640	11600.0	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	14.87	11.52	14.8	6.07	4.2	0.8	6.34	5.75	3.75
Merged-chr5-88766260-2	chr5	88765776	88766776	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007832, intron 1 of 6)	intron (NM_007832, intron 1 of 6)	1263.0	NM_007832	13178.0	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	24.6	59.44	57.35	33.06	26.59	40.99	61.26	73.84	39.97
Merged-chr2-130862225-1	chr2	130861725	130862725	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22080.0	NM_029432	228602.0	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	4.58	2.76	1.85	3.37	10.26	3.22	2.11	6.19	6.25
Merged-chr12-99333649-2	chr12	99333155	99334155	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	116419.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	6.86	5.99	9.25	10.12	5.13	20.09	7.39	6.19	8.12
Merged-chr4-43043276-1	chr4	43042776	43043776	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045567, intron 1 of 7)	B1_Mus2|SINE|Alu	2944.0	NR_045567	230088.0	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	48.62	56.68	34.22	29.01	25.66	60.28	57.03	57.04	44.34
Merged-chr2-167420848-3	chr2	167420334	167421334	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_148929)	promoter-TSS (NM_148929)	-876.0	NM_148929	77031.0	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	226.53	196.29	147.07	262.47	186.6	166.38	226.02	195.44	108.67
Merged-chr2-154890263-1	chr2	154889763	154890763	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026030, intron 1 of 8)	intron (NM_026030, intron 1 of 8)	2643.0	NM_026030	67204.0	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	37.76	23.5	14.8	47.9	37.79	14.47	35.91	28.74	16.24
Merged-chr17-29510804-1	chr17	29510304	29511304	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	19759.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	9.72	0.92	0.0	2.7	2.8	1.61	5.28	5.31	1.25
Merged-chr5-88953231-1	chr5	88952731	88953731	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359211, intron 2 of 26)	intron (NM_001359211, intron 2 of 26)	65971.0	NM_018760	54403.0	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	17.73	24.42	20.35	16.19	14.0	4.82	23.24	13.27	8.12
Merged-chr9-54614345-1	chr9	54613845	54614845	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053178, intron 11 of 13)	intron (NM_053178, intron 11 of 13)	27834.0	NM_029573	67834.0	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	1.14	4.61	4.62	4.05	2.33	2.41	3.17	0.44	1.25
Merged-chr15-34587380-1	chr15	34586880	34587880	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145469, intron 6 of 10)	intron (NM_145469, intron 6 of 10)	-87693.0	NR_045883	71637.0	Mm.410827	NR_045883	ENSMUSG00000115526	4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	6.86	5.53	2.77	0.67	5.6	1.61	6.34	4.86	1.25
Merged-chr3-107067476-1	chr3	107066976	107067976	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27972.0	NR_033498	229694.0	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	4.0	1.84	0.0	2.02	3.73	2.41	3.17	3.98	3.12
Merged-chr15-31468070-1	chr15	31467570	31468570	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172606, intron 22 of 25)	MTB|LTR|ERVL-MaLR	-14381.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	12.01	11.98	15.72	26.31	22.39	29.74	34.85	29.18	24.36
Merged-chr10-95894922-1	chr10	95894422	95895422	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45741.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	6.86	2.3	1.85	4.72	1.4	3.22	2.11	4.86	3.75
Merged-chr19-61238169-1	chr19	61237669	61238669	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9751.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	4.58	0.92	1.85	1.35	0.0	3.22	3.17	1.33	2.5
Merged-chr18-64936220-1	chr18	64935720	64936720	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 1 of 30)	intron (NM_001114386, intron 1 of 30)	48464.0	NM_001114386	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	1.72	1.84	5.55	1.35	1.4	3.22	5.28	1.77	0.62
Merged-chr6-34610599-1	chr6	34610099	34611099	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347100, intron 1 of 13)	intron (NM_001347100, intron 1 of 13)	12095.0	NM_001347100	109624.0	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	9.72	7.37	7.4	6.07	14.93	11.25	14.79	10.61	13.74
Merged-chr3-90313568-1	chr3	90313068	90314068	+	634.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-28086.0	NM_139304	229542.0	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	8.01	5.07	8.32	5.4	7.46	3.22	6.34	5.31	3.12
Merged-chr13-34084459-1	chr13	34083959	34084959	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_046184, exon 5 of 5)	non-coding (NR_046184, exon 5 of 5)	-6451.0	NM_009450	22151.0	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	22.31	25.34	24.97	26.31	15.39	17.68	13.73	7.07	3.75
Merged-chr12-26469950-1	chr12	26469450	26470450	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_020557, exon 1 of 5)	exon (NM_020557, exon 1 of 5)	735.0	NM_020557	22169.0	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	69.79	49.3	59.2	46.56	52.25	73.95	66.54	69.42	28.1
Merged-chr2-145786476-1	chr2	145785976	145786976	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	360.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	8.01	5.07	3.7	4.72	10.73	10.45	6.34	7.52	5.0
Merged-chr4-123083084-2	chr4	123082592	123083592	+	634.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22069.0	NM_007559	12164.0	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	2.86	1.84	0.0	0.67	1.4	1.61	0.0	3.98	2.5
Merged-chr5-140829563-1	chr5	140829063	140830063	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	ID_B1|SINE|B4	868.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	98.39	110.59	85.1	84.34	122.69	126.19	71.82	83.57	64.33
Merged-chrX-99001439-1	chrX	99000939	99001939	+	634.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41142.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	9.15	4.61	10.17	10.8	7.0	15.27	3.17	12.38	6.25
Merged-chr7-28832388-2	chr7	28831895	28832895	+	633.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_016772)	TTS (NM_016772)	-1399.0	NM_010706	16855.0	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	7.44	4.61	7.4	4.72	7.46	4.82	2.11	1.33	7.49
Merged-chr3-95883219-2	chr3	95882708	95883708	+	633.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-980.0	NM_001033302	229599.0	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	34.9	27.65	10.17	52.63	31.26	21.7	67.6	58.37	20.61
Merged-chr2-91187635-3	chr2	91187137	91188137	+	633.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355279, intron 7 of 9)	intron (NM_001355279, intron 7 of 9)	-4590.0	NM_145527	228355.0	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	20.59	18.43	39.77	20.92	11.66	28.94	16.9	21.22	14.99
Merged-chr5-77252509-4	chr5	77252030	77253030	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-12964.0	NM_011263	19712.0	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	6.86	4.61	5.55	3.37	3.27	6.43	8.45	4.86	9.37
Merged-chr11-62574419-2	chr11	62573932	62574932	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011706)	promoter-TSS (NM_011706)	-54.0	NM_011706	22368.0	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	24.03	24.42	41.62	15.52	23.33	49.03	38.02	34.49	23.11
Merged-chr3-95670606-2	chr3	95670116	95671116	+	633.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	11895.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	33.18	26.73	24.97	31.71	15.86	36.17	40.14	29.63	29.98
Merged-chr9-15015770-2	chr9	15015292	15016292	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019482, intron 2 of 4)	intron (NM_019482, intron 2 of 4)	29686.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	2.86	4.15	1.85	3.37	5.6	3.22	3.17	1.77	2.5
Merged-chr16-90197019-2	chr16	90196530	90197530	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23712.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	44.05	20.27	50.87	25.64	16.79	27.33	29.57	19.01	21.23
Merged-chr17-35865030-2	chr17	35864526	35865526	+	633.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001146711)	promoter-TSS (NM_001146711)	-569.0	NM_001146711	76448.0	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	13.16	11.98	19.42	8.1	6.06	20.9	15.84	12.38	16.24
Merged-chr10-117808310-3	chr10	117807775	117808775	+	633.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15570.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	18.88	7.83	9.25	14.17	9.8	15.27	5.28	7.52	3.12
Merged-chr3-62496057-3	chr3	62495558	62496558	+	633.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 5 of 24)	intron (NM_028136, intron 5 of 24)	10930.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	13.73	13.36	3.7	15.52	10.26	10.45	20.07	13.71	16.86
Merged-chr12-112627648-1	chr12	112627148	112628148	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007421, intron 1 of 12)	intron (NM_007421, intron 1 of 12)	7601.0	NM_007421	11565.0	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	21.74	8.75	15.72	12.14	13.06	16.08	13.73	11.5	11.24
Merged-chr2-132230004-3	chr2	132229513	132230513	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17775.0	NM_027478	70612.0	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	24.03	22.58	12.95	16.87	13.06	20.9	21.12	15.48	12.49
Merged-chr9-60744824-1	chr9	60744324	60745324	+	633.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31703.0	NM_026235	67557.0	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	4.0	7.37	3.7	4.72	2.8	4.02	3.17	0.88	11.24
Merged-chr4-84977059-2	chr4	84976554	84977554	+	633.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175275, intron 7 of 25)	Lx8b|LINE|L1	92745.0	NM_177385	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	3.43	2.76	14.8	6.75	0.93	3.22	2.11	5.75	4.37
Merged-chr5-123372347-2	chr5	123371855	123372855	+	633.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_029850, exon 6 of 6)	3' UTR (NM_029850, exon 6 of 6)	-22443.0	NM_133917	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	38.33	41.93	34.22	41.16	19.59	27.33	51.75	57.48	58.08
Merged-chr7-44589347-3	chr7	44588842	44589842	+	633.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1544.0	NM_008422	16504.0	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	1.72	3.23	0.92	5.4	1.4	4.82	1.06	0.0	3.12
Merged-chr2-180172331-1	chr2	180171831	180172831	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019822, intron 2 of 9)	intron (NM_019822, intron 2 of 9)	743.0	NM_019822	56436.0	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	110.41	128.56	140.59	138.32	101.7	91.63	126.74	66.33	71.82
Merged-chr1-173730141-2	chr1	173729656	173730656	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001204910, exon 5 of 8)	exon (NM_001204910, exon 5 of 8)	11653.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	10.87	8.29	6.47	10.8	4.67	4.82	9.51	6.19	7.49
Merged-chr1-177487986-1	chr1	177487486	177488486	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42165.0	NM_013915	30928.0	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	4.58	3.23	6.47	4.72	3.27	1.61	3.17	8.84	3.75
Merged-chr4-129003942-1	chr4	129003442	129004442	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016895, intron 4 of 6)	intron (NM_016895, intron 4 of 6)	10718.0	NM_001033966	11637.0	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	9.15	5.07	9.25	9.45	5.6	6.43	11.62	11.5	2.5
Merged-chr11-22784706-1	chr11	22784206	22785206	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75029.0	NM_016888	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	13.73	9.22	5.55	10.12	11.2	13.66	9.51	12.82	16.24
Merged-chr18-75906135-1	chr18	75905635	75906635	+	633.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	85957.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.72	0.92	6.47	3.37	2.8	0.0	10.56	23.88	14.99
Merged-chr3-28038338-1	chr3	28037838	28038838	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008875, intron 6 of 25)	RLTR26C_MM|LTR|ERVK	54167.0	NM_008875	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	12.01	11.52	20.35	14.84	11.2	7.23	16.9	17.69	13.74
Merged-chr1-183442293-1	chr1	183441793	183442793	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23045.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	8.01	0.92	0.0	0.67	0.93	2.41	4.22	2.65	1.25
Merged-chr7-81199298-1	chr7	81198798	81199798	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-14506.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	38.9	29.95	33.3	58.03	34.52	61.09	39.08	23.88	30.6
Merged-chr15-38388464-2	chr15	38387959	38388959	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13A1|LTR|ERVK	-87748.0	NM_001289471	21847.0	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	2.29	2.3	5.55	2.7	4.67	1.61	6.34	2.21	0.0
Merged-chr1-152800781-1	chr1	152800281	152801281	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010877, intron 1 of 15)	intron (NM_010877, intron 1 of 15)	628.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	203.65	228.55	128.57	213.89	191.27	152.72	197.51	298.46	140.52
Merged-chr2-145804138-2	chr2	145803636	145804636	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	intron (NM_028724, intron 2 of 12)	18020.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	12.59	18.89	16.65	22.94	17.73	10.45	11.62	14.59	16.86
Merged-chr19-5965447-1	chr19	5964947	5965947	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1241.0	NM_008893	18969.0	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	26.89	21.2	25.9	16.19	14.0	17.68	13.73	32.28	14.99
Merged-chr6-108751507-1	chr6	108751007	108752007	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31552.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	8.01	2.76	0.0	4.05	1.87	0.0	4.22	3.98	1.25
Merged-chr6-134156315-3	chr6	134155845	134156845	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	120645.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	21.17	12.9	5.55	16.19	4.2	8.04	12.67	5.75	11.24
Merged-chr1-184825340-2	chr1	184824836	184825836	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133684, intron 4 of 7)	intron (NM_133684, intron 4 of 7)	-2848.0	NR_035502	100316821.0		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	8.58	3.69	1.85	4.72	3.73	8.04	4.22	4.42	1.87
Merged-chr1-137899554-2	chr1	137899098	137900098	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66857.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	21.17	46.54	19.42	35.76	38.25	39.39	48.58	54.39	29.98
Merged-chr10-56690861-1	chr10	56690361	56691361	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	258880.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	2.29	8.29	9.25	0.67	6.53	10.45	4.22	3.54	7.49
Merged-chr3-105775853-2	chr3	105775344	105776344	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145541, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	25537.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	17.73	10.14	18.5	17.54	7.46	14.47	26.4	19.46	9.99
Merged-chr8-70808390-2	chr8	70807888	70808888	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008353)	promoter-TSS (NM_008353)	-61.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	3.43	8.29	7.4	8.77	3.27	3.22	6.34	6.63	5.0
Merged-chr17-88344340-1	chr17	88343840	88344840	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96364.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	5.15	10.6	3.7	10.8	3.73	4.82	3.17	4.42	6.25
Merged-chr7-126144018-2	chr7	126143518	126144518	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028816, intron 8 of 23)	intron (NM_028816, intron 8 of 23)	56483.0	NM_001311143	74204.0	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370	exportin 6	protein-coding	92.67	124.41	110.99	94.46	62.98	87.61	84.49	103.02	62.45
Merged-chr2-131056405-2	chr2	131055938	131056938	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033615, intron 5 of 20)	intron (NM_033615, intron 5 of 20)	7376.0	NR_136922	110751.0	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	8.01	6.45	14.8	2.02	0.93	4.02	5.28	2.65	5.0
Merged-chr4-123545813-1	chr4	123545313	123546313	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 2 of 92)	intron (NM_001199137, intron 2 of 92)	-70607.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	13.16	15.21	14.8	11.47	13.53	8.84	12.67	8.4	6.87
Merged-chr7-126794335-1	chr7	126793835	126794835	+	633.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001177308)	TTS (NM_001177308)	-1788.0	NM_019674	56420.0	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	29.75	29.95	47.17	15.52	14.0	27.33	43.3	25.2	39.97
Merged-chr11-79089841-2	chr11	79089316	79090316	+	633.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013571, intron 1 of 17)	IMPB_01|Satellite|Satellite	-29980.0	NM_001348207	16706.0	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb|mKSR1	kinase suppressor of ras 1	protein-coding	25.17	29.03	34.22	31.71	27.06	14.47	31.69	27.41	26.23
Merged-chr2-105428139-1	chr2	105427639	105428639	+	633.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28820.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	3.43	1.38	0.0	2.7	2.8	3.22	3.17	5.31	0.62
Merged-chr8-83260595-3	chr8	83260105	83261105	+	633.488892	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111304, intron 15 of 20)	intron (NM_001111304, intron 15 of 20)	-29743.0	NM_009463	22227.0	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	5.72	3.23	2.77	5.4	1.4	3.22	3.17	2.21	7.49
Merged-chr11-24049452-3	chr11	24048952	24049952	+	633.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28604.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	5.15	0.46	5.55	2.7	0.93	4.82	3.17	2.65	2.5
Merged-chr7-67226395-3	chr7	67225928	67226928	+	633.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175215, exon 3 of 3)	exon (NM_175215, exon 3 of 3)	3812.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	4.58	4.61	5.55	4.72	3.27	12.06	4.22	1.77	2.5
Merged-chr8-72491798-3	chr8	72491294	72492294	+	633.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177766, intron 2 of 5)	intron (NM_177766, intron 2 of 5)	820.0	NM_177766	270066.0	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	78.94	72.34	55.5	65.45	35.45	36.17	53.87	51.29	23.73
Merged-chr10-123264049-3	chr10	123263556	123264556	+	633.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_182807)	promoter-TSS (NM_182807)	-20.0	NR_153334	268354.0	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|Sam2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	1.14	0.92	5.55	2.7	3.27	1.61	4.22	0.0	6.25
Merged-chr13-37777522-2	chr13	37777021	37778021	+	633.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-48517.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	68.65	57.14	63.82	70.85	61.58	75.56	90.83	75.17	47.46
Merged-chr5-101938339-2	chr5	101937848	101938848	+	633.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172882, intron 13 of 66)	B3|SINE|B2	131573.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	35.47	15.67	15.72	26.31	11.2	16.08	26.4	19.01	16.86
Merged-chr2-145391801-2	chr2	145391290	145392290	+	633.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	149179.0	NM_053195	94249.0	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.0	2.3	2.77	1.35	3.73	2.41	3.17	6.19	2.5
Merged-chr7-101863635-1	chr7	101863135	101864135	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252552, intron 4 of 6)	intron (NM_001252552, intron 4 of 6)	-6445.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	17.73	10.14	7.4	16.19	13.06	14.47	13.73	9.73	14.99
Merged-chr17-10232620-1	chr17	10232120	10233120	+	633.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	86741.0	NM_021881	19317.0	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	44.62	54.83	43.47	31.04	28.92	32.15	68.65	61.46	38.1
Merged-chr16-77049481-3	chr16	77048993	77049993	+	633.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013918, intron 4 of 23)	intron (NM_013918, intron 4 of 23)	35424.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	13.16	6.91	10.17	8.77	6.53	4.82	7.39	8.4	7.49
Merged-chr3-54680287-1	chr3	54679787	54680787	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12528.0	NR_152185	56790.0	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	5.15	7.83	1.85	5.4	2.33	1.61	4.22	2.65	8.12
Merged-chr16-43432224-1	chr16	43431724	43432724	+	633.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	-12028.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	10.87	13.82	14.8	15.52	12.13	16.08	7.39	13.27	10.62
Merged-chr4-133005441-3	chr4	133004933	133005933	+	633.305542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6073.0	NM_146155	230793.0	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	16.59	5.07	1.85	12.82	6.53	1.61	6.34	4.42	3.75
Merged-chr5-99284524-2	chr5	99284026	99285026	+	633.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31599.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.15	11.06	7.4	14.17	12.13	21.7	1.06	2.21	1.87
Merged-chr2-124614683-1	chr2	124614183	124615183	+	633.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	4387.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	58.35	68.2	48.1	53.3	39.65	53.05	66.54	57.92	40.59
Merged-chr15-99583757-2	chr15	99583203	99584203	+	633.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009699, intron 3 of 3)	intron (NM_009699, intron 3 of 3)	4647.0	NM_009699	11827.0	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	4.0	2.3	6.47	8.77	2.8	11.25	2.11	2.65	2.5
Merged-chr2-29640737-3	chr2	29640198	29641198	+	633.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	intron (NM_054050, intron 1 of 23)	20978.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	57.21	47.0	44.4	29.69	43.39	61.09	58.09	37.14	51.84
Merged-chr16-91549276-2	chr16	91548764	91549764	+	633.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008338, intron 1 of 6)	IMPB_01|Satellite|Satellite	2170.0	NM_008338	15980.0	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	135.58	103.22	42.55	153.16	82.57	80.38	241.87	252.04	106.17
Merged-chr3-106556046-2	chr3	106555554	106556554	+	633.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025582, intron 3 of 6)	ORR1G|LTR|ERVL-MaLR	-8252.0	NM_133869	99712.0	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	45.76	50.23	58.27	42.51	47.58	61.89	45.42	46.87	41.84
Merged-chr18-84294255-2	chr18	84293730	84294730	+	633.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	206072.0	NM_146090	225791.0	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	101.83	135.93	92.5	88.39	113.36	58.68	151.03	169.79	53.71
Merged-chr1-167415038-2	chr1	167414542	167415542	+	633.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21245.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	2.29	1.38	0.0	6.07	1.4	3.22	3.17	0.88	1.25
Merged-chr1-167269492-2	chr1	167268986	167269986	+	633.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030724, intron 1 of 6)	intron (NM_030724, intron 1 of 6)	15641.0	NM_030724	80914.0	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	7.44	5.53	6.47	4.72	1.87	4.82	4.22	1.77	0.62
Merged-chr16-32499896-2	chr16	32499419	32500419	+	633.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199309, intron 6 of 8)	intron (NM_199309, intron 6 of 8)	3638.0	NM_199309	245308.0	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	2.86	5.53	0.0	4.72	2.33	2.41	3.17	1.33	1.25
Merged-chr17-75536813-1	chr17	75536313	75537313	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133747)	TTS (NM_133747)	15133.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	4.58	0.46	1.85	0.0	3.73	3.22	5.28	1.33	5.62
Merged-chr12-35894530-1	chr12	35894030	35895030	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31091.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	1.14	3.23	3.7	4.05	0.47	0.0	5.28	3.1	3.12
Merged-chr9-65193366-1	chr9	65192866	65193866	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21324.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	12.59	11.52	12.95	31.04	25.19	22.51	14.79	24.76	3.12
Merged-chr11-59811581-1	chr11	59811081	59812081	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045686, intron 1 of 1)	intron (NR_045686, intron 1 of 1)	1501.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	6.29	4.61	5.55	27.66	16.33	33.76	13.73	11.05	7.49
Merged-chr7-98691038-1	chr7	98690538	98691538	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	11890.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	6.86	3.69	0.0	6.07	8.4	0.0	3.17	4.86	2.5
Merged-chr9-47653535-1	chr9	47653035	47654035	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	123183.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	45.19	52.53	58.27	59.38	63.91	65.11	28.52	24.32	16.86
Merged-chr2-51072694-1	chr2	51072194	51073194	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76417.0	NM_028810	74194.0	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	17.16	9.68	3.7	12.14	5.13	5.63	8.45	3.98	2.5
Merged-chr1-66863913-1	chr1	66863413	66864413	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007381)	promoter-TSS (NM_007381)	-604.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	35.47	42.85	16.65	93.79	110.56	69.93	100.34	123.36	76.82
Merged-chr8-11450842-1	chr8	11450342	11451342	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27087.0	NR_126558	102132.0	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	14.3	13.82	8.32	18.89	11.2	19.29	11.62	13.27	5.0
Merged-chr10-78279338-1	chr10	78278838	78279838	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 7 of 9)	intron (NM_053014, intron 7 of 9)	-34696.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	6.86	1.38	1.85	4.72	0.47	4.02	5.28	0.0	1.25
Merged-chr8-84363935-1	chr8	84363435	84364435	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51429.0	NM_001252060	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	2.86	2.3	3.7	5.4	1.87	1.61	4.22	1.77	3.75
Merged-chr9-103996719-2	chr9	103996219	103997219	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5825.0	NM_028721	74025.0	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	3.43	1.38	1.85	0.0	3.73	8.04	0.0	0.44	0.0
Merged-chr16-55805232-1	chr16	55804732	55805732	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME2|LINE|L1	16906.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	7.44	6.45	9.25	2.7	3.27	3.22	7.39	2.65	3.75
Merged-chr2-102057575-1	chr2	102057075	102058075	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 4 of 5)	intron (NM_178886, intron 4 of 5)	128885.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.43	0.46	2.77	6.07	9.33	8.04	3.17	1.77	1.25
Merged-chr2-126073415-1	chr2	126072915	126073915	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008008, intron 2 of 3)	intron (NM_008008, intron 2 of 3)	38757.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	22.88	21.66	18.5	35.76	33.59	28.94	23.24	22.55	15.61
Merged-chr5-110434914-1	chr5	110434414	110435414	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001317042, intron 1 of 2)	intron (NM_001317042, intron 1 of 2)	13589.0	NM_001317042	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	6.86	0.46	5.55	4.72	0.93	4.82	6.34	0.88	4.37
Merged-chr11-54486269-1	chr11	54485769	54486769	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 6 of 17)	intron (NM_173753, intron 6 of 17)	-36576.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.86	10.14	13.87	8.1	14.93	19.29	13.73	7.52	11.24
Merged-chr14-13960190-1	chr14	13959690	13960690	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359900, intron 1 of 8)	RSINE1|SINE|B4	1123.0	NM_001285780	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	7.44	17.05	8.32	14.17	12.6	20.9	19.01	18.57	2.5
Merged-chr1-21068654-1	chr1	21068154	21069154	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	10571.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	5.72	5.53	11.1	4.05	5.6	4.82	3.17	2.65	3.75
Merged-chr14-102784863-1	chr14	102784363	102785363	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	197769.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	5.72	3.69	2.77	12.82	2.33	12.06	10.56	4.42	9.99
Merged-chr9-51990982-1	chr9	51990482	51991482	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27380.0	NM_007996	14148.0	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	4.0	0.92	0.0	4.05	1.4	3.22	1.06	2.65	0.0
Merged-chr13-28513225-1	chr13	28512725	28513725	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	197648.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	22.88	17.05	3.7	16.87	17.26	4.82	14.79	6.19	8.12
Merged-chr14-17912899-2	chr14	17912396	17913396	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-68748.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	10.87	9.68	4.62	7.42	7.46	8.84	15.84	7.07	6.25
Merged-chr5-32721607-1	chr5	32721107	32722107	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24735.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.14	1.38	1.85	2.02	1.87	1.61	3.17	0.44	3.75
Merged-chr15-103476879-1	chr15	103476379	103477379	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 18 of 30)	intron (NM_153505, intron 18 of 30)	23054.0	NM_153505	105855.0	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	6.86	10.6	19.42	6.75	9.8	4.02	14.79	10.17	6.25
Merged-chr16-76220589-2	chr16	76220092	76221092	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR90A|LTR|LTR	97979.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	10.3	9.68	3.7	4.72	2.8	3.22	7.39	9.73	13.74
Merged-chr11-85823393-1	chr11	85822893	85823893	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_077059, intron 1 of 4)	intron (NR_077059, intron 1 of 4)	8995.0	NR_077059	69909.0	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	2.86	3.23	0.0	4.72	1.87	6.43	2.11	0.44	1.87
Merged-chr8-117502373-1	chr8	117501873	117502873	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172285, intron 1 of 32)	intron (NM_172285, intron 1 of 32)	4098.0	NM_172285	234779.0	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	5.15	4.15	10.17	12.14	0.47	7.23	5.28	5.75	7.49
Merged-chr1-173634451-2	chr1	173633948	173634948	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175026, intron 1 of 6)	intron (NM_175026, intron 1 of 6)	3589.0	NM_175026	236312.0	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	37.18	35.48	11.1	19.57	20.06	11.25	40.14	36.7	12.49
Merged-chr6-83162949-1	chr6	83162449	83163449	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027948)	TTS (NM_027948)	-2975.0	NM_001198866	13191.0	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	10.87	5.53	3.7	8.1	6.53	11.25	5.28	5.31	2.5
Merged-chr5-57478072-2	chr5	57477580	57478580	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	239839.0	NR_015588	319216.0	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.57	1.38	4.62	0.67	2.33	5.63	1.06	1.33	3.75
Merged-chr2-163788683-1	chr2	163788183	163789183	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32151.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	10.87	0.46	0.0	2.7	2.8	8.04	1.06	2.65	1.25
Merged-chr6-72440531-1	chr6	72440031	72441031	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145569)	promoter-TSS (NM_145569)	-973.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	53.2	87.55	64.75	72.87	83.51	82.79	102.45	90.64	62.45
Merged-chr8-126909584-1	chr8	126909084	126910084	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36337.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	17.16	12.9	6.47	32.39	21.46	12.86	12.67	15.92	1.25
Merged-chr1-172046536-2	chr1	172046034	172047034	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11062.0	NM_010916	18071.0	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	5.72	4.15	5.55	2.02	1.87	4.82	3.17	1.33	2.5
Merged-chr13-76099129-1	chr13	76098629	76099629	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029847)	promoter-TSS (NM_029847)	395.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	28.03	35.94	12.95	39.13	17.26	19.29	28.52	36.26	19.36
Merged-chr5-25007065-1	chr5	25006565	25007565	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-11312.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.86	1.84	3.7	0.67	1.4	4.02	2.11	2.21	4.37
Merged-chr3-135683479-2	chr3	135682977	135683977	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 1 of 24)	intron (NM_008689, intron 1 of 24)	8070.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	7.44	16.13	10.17	9.45	13.53	5.63	9.51	8.84	11.87
Merged-chr8-36826352-1	chr8	36825852	36826852	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	MTD|LTR|ERVL-MaLR	-93298.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	7.44	5.53	5.55	6.75	2.8	1.61	3.17	3.54	5.62
Merged-chr13-47211392-1	chr13	47210892	47211892	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146042, intron 2 of 7)	intron (NM_146042, intron 2 of 7)	17389.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	9.15	17.97	14.8	18.89	16.33	27.33	7.39	4.86	7.49
Merged-chr3-89795781-1	chr3	89795281	89796281	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22172.0	NM_027315	70093.0	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	89.24	61.75	59.2	89.74	76.51	84.4	78.16	83.13	44.97
Merged-chr10-93078628-2	chr10	93078080	93079080	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347060, intron 1 of 67)	intron (NM_001347060, intron 1 of 67)	3016.0	NM_001347060	380654.0	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	7.44	3.69	1.85	4.05	2.8	10.45	9.51	6.19	13.12
Merged-chr17-28283415-1	chr17	28282915	28283915	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011145, intron 2 of 7)	intron (NM_011145, intron 2 of 7)	-9793.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	1.72	1.38	3.7	3.37	5.13	4.82	3.17	4.42	5.62
Merged-chr14-66175878-2	chr14	66175390	66176390	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 10 of 30)	intron (NM_001162366, intron 10 of 30)	34930.0	NM_144803	110902.0	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	3.43	8.29	11.1	3.37	1.4	1.61	2.11	3.1	2.5
Merged-chr12-40431721-1	chr12	40431221	40432221	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172575, intron 1 of 12)	RMER6B|LTR|ERVK	14069.0	NM_172575	246196.0	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	77.23	76.95	50.87	76.92	60.65	51.44	95.06	95.07	43.72
Merged-chr14-75761258-2	chr14	75760743	75761743	+	633.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026232)	TTS (NM_026232)	-6750.0	NM_177381	338337.0	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	5.72	5.53	0.0	4.05	6.06	6.43	4.22	1.33	5.0
Merged-chr8-34156496-1	chr8	34155996	34156996	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026432, intron 1 of 5)	intron (NM_026432, intron 1 of 5)	1933.0	NM_026432	67887.0	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	36.61	57.6	23.12	16.19	24.72	27.33	33.8	28.3	29.98
Merged-chr5-140963060-1	chr5	140962560	140963560	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	37536.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	9.15	2.76	0.0	4.05	0.0	3.22	1.06	0.88	6.87
Merged-chrX-153694980-1	chrX	153694480	153695480	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175429, intron 2 of 2)	intron (NM_175429, intron 2 of 2)	1300.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	25.74	28.57	21.27	22.27	20.53	6.43	17.96	20.34	13.12
Merged-chr17-48331051-1	chr17	48330551	48331551	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14889.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	26.89	23.96	14.8	35.76	23.79	32.96	24.29	20.34	13.12
Merged-chr3-19305565-1	chr3	19305065	19306065	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 1 of 12)	intron (NM_001122759, intron 1 of 12)	5757.0	NM_001122759	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.43	4.61	1.85	7.42	1.87	0.0	3.17	1.33	1.25
Merged-chr1-152580628-1	chr1	152580128	152581128	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	ORR1F|LTR|ERVL-MaLR	44589.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	213.95	171.87	89.72	170.7	95.17	101.28	159.48	160.95	75.57
Merged-chr14-30609495-2	chr14	30609010	30610010	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011103, intron 2 of 17)	intron (NM_011103, intron 2 of 17)	800.0	NM_001310682	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	16.59	8.29	12.02	22.94	11.66	22.51	16.9	11.94	13.74
Merged-chr10-84533586-1	chr10	84533086	84534086	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175451, exon 1 of 2)	exon (NM_175451, exon 1 of 2)	302.0	NM_175451	216197.0	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	14.87	10.14	7.4	25.64	7.93	16.08	25.35	7.52	5.0
Merged-chr5-142932049-1	chr5	142931549	142932549	+	633.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25295.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	39.47	57.14	77.7	49.25	32.19	57.07	76.05	80.03	62.45
Merged-chr10-84341604-1	chr10	84341104	84342104	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	98867.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	11.44	12.44	14.8	18.89	18.19	20.09	16.9	15.03	3.75
Merged-chr6-43542049-1	chr6	43541549	43542549	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 4 of 8)	intron (NM_013861, intron 4 of 8)	99620.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	5.15	3.69	8.32	8.1	7.93	12.86	9.51	5.75	5.0
Merged-chr9-90266302-1	chr9	90265802	90266802	+	633.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	4467.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	40.62	59.44	51.8	59.38	63.45	51.44	94.0	81.36	37.47
Merged-chr17-43550199-3	chr17	43549689	43550689	+	632.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-6550.0	NM_001254953	100043332.0	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	8.01	5.99	0.0	7.42	5.13	6.43	2.11	3.1	1.25
Merged-chr13-81439536-2	chr13	81439045	81440045	+	632.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_054053, exon 67 of 90)	exon (NM_054053, exon 67 of 90)	193599.0	NM_054053	110789.0	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	3.43	1.84	5.55	3.37	1.4	0.8	2.11	1.33	1.25
Merged-chr1-151353142-2	chr1	151352651	151353651	+	632.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039511, intron 5 of 7)	B2_Mm2|SINE|B2	8653.0	NM_001039511	117198.0	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	5.15	4.15	1.85	10.8	1.4	9.65	3.17	2.65	7.49
Merged-chr17-24015859-2	chr17	24015333	24016333	+	632.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17733.0	NM_133731	70835.0	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	7.44	0.46	1.85	4.72	2.33	4.02	5.28	2.21	5.62
Merged-chr12-70233767-3	chr12	70233204	70234204	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045174, intron 4 of 4)	intron (NR_045174, intron 4 of 4)	5863.0	NR_045174	414124.0	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	5.72	7.83	7.4	4.05	9.33	11.25	14.79	17.69	12.49
Merged-chr16-94504374-3	chr16	94503881	94504881	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007834, intron 4 of 7)	intron (NM_007834, intron 4 of 7)	22248.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	17.16	21.2	11.1	32.39	18.19	16.08	27.46	10.17	9.37
Merged-chr1-37002281-3	chr1	37001798	37002798	+	632.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-62771.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	38.9	32.72	37.92	28.34	24.72	33.76	34.85	26.53	29.35
Merged-chr10-80548908-2	chr10	80548418	80549418	+	632.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025852, intron 2 of 14)	intron (NM_025852, intron 2 of 14)	-9794.0	NM_026094	67331.0	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.57	1.38	3.7	0.0	0.93	0.0	2.11	0.88	3.12
Merged-chr4-116991571-3	chr4	116991079	116992079	+	632.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009478, intron 7 of 9)	intron (NM_009478, intron 7 of 9)	2834.0	NM_009478	22275.0	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	4.0	1.38	11.1	5.4	0.47	4.82	2.11	3.98	0.0
Merged-chr11-60697687-1	chr11	60697187	60698187	+	632.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2003.0	NM_001159405	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	2.86	2.3	0.0	2.02	1.4	3.22	4.22	0.88	3.12
Merged-chr3-148987011-1	chr3	148986511	148987511	+	632.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32376.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.57	0.92	7.4	6.75	4.67	2.41	4.22	3.54	2.5
Merged-chr12-18514394-1	chr12	18513894	18514894	+	632.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033157)	promoter-TSS (NM_001033157)	-116.0	NM_001033157	236366.0	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	1.14	0.92	1.85	0.0	0.0	1.61	4.22	0.0	1.25
Merged-chr15-30611331-2	chr15	30610882	30611882	+	632.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	-427744.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	60.64	71.42	50.87	39.13	29.86	47.42	70.76	67.21	48.71
Merged-chr3-89308298-2	chr3	89307787	89308787	+	632.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14592.0	NM_010108	13638.0	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	5.72	2.3	3.7	8.1	0.93	0.0	3.17	0.88	1.25
Merged-chr1-189080994-1	chr1	189080494	189081494	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-73154.0	NR_153196	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.57	0.92	0.0	0.0	0.93	1.61	1.06	0.44	3.12
Merged-chr11-54520462-2	chr11	54519987	54520987	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2358.0	NM_001252494	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	15.45	21.66	22.2	13.49	14.0	17.68	17.96	19.46	11.24
Merged-chr14-65105207-1	chr14	65104707	65105707	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7101.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	8.58	11.06	24.05	7.42	13.53	19.29	9.51	11.94	13.12
Merged-chr4-141407079-1	chr4	141406579	141407579	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019701, intron 16 of 19)	intron (NM_019701, intron 16 of 19)	-8373.0	NM_024412	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.57	2.76	7.4	5.4	0.93	0.0	2.11	1.33	3.75
Merged-chr17-56939363-1	chr17	56938863	56939863	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-3975.0	NM_022328	64144.0	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	14.3	24.88	5.55	16.19	13.53	12.86	12.67	9.29	8.12
Merged-chr17-28329473-2	chr17	28328964	28329964	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011287, exon 4 of 6)	exon (NM_011287, exon 4 of 6)	899.0	NM_001357628	19896.0	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	62.35	43.77	62.9	61.4	67.64	50.64	52.81	48.2	33.1
Merged-chr8-40023634-2	chr8	40023139	40024139	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	263314.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	7.44	7.83	7.4	8.77	8.86	9.65	7.39	6.19	11.24
Merged-chr8-108608967-1	chr8	108608467	108609467	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24290.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.44	1.84	12.02	8.1	4.2	7.23	2.11	1.77	3.75
Merged-chrX-18284754-1	chrX	18284254	18285254	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	122179.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	5.72	2.76	1.85	4.72	2.33	0.0	2.11	0.44	6.25
Merged-chr9-96143832-2	chr9	96143335	96144335	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177352, intron 5 of 16)	intron (NM_177352, intron 5 of 16)	24406.0	NM_177352	235533.0	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	6.86	2.3	5.55	0.0	2.33	4.82	2.11	2.65	5.0
Merged-chr1-181022419-1	chr1	181021919	181022919	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4850.0	NM_010145	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	6.29	2.76	5.55	6.75	4.67	3.22	3.17	3.1	5.0
Merged-chr13-23578101-2	chr13	23577583	23578583	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2320.0	NM_178204	319149.0	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	8.58	11.52	6.47	9.45	5.13	3.22	10.56	3.98	4.37
Merged-chr12-16882657-1	chr12	16882157	16883157	+	632.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12321.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	207.66	262.19	191.47	218.61	220.19	221.04	185.89	235.23	168.0
Merged-chr8-77425911-2	chr8	77425408	77426408	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	(T)n|Simple_repeat|Simple_repeat	-91148.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	16.59	4.15	3.7	4.05	4.67	4.82	4.22	5.31	3.12
Merged-chr8-106443760-2	chr8	106443253	106444253	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28414.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	9.72	9.68	3.7	12.14	9.8	6.43	19.01	8.4	6.25
Merged-chr6-28623170-2	chr6	28622673	28623673	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 10 of 23)	intron (NM_019776, intron 10 of 23)	142825.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	50.34	59.44	33.3	52.63	36.39	33.76	55.98	54.83	19.98
Merged-chr9-61682548-1	chr9	61682048	61683048	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	231962.0	NM_018853	56040.0	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	2.29	3.69	1.85	4.05	3.73	6.43	5.28	2.21	5.62
Merged-chr11-100321843-2	chr11	100321354	100322354	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011508, exon 4 of 4)	3' UTR (NM_011508, exon 4 of 4)	1905.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	50.34	37.78	47.17	42.51	16.33	29.74	38.02	41.56	33.72
Merged-chr19-6281632-3	chr19	6281088	6282088	+	632.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	4692.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	12.01	5.53	5.55	5.4	2.8	1.61	4.22	2.65	2.5
Merged-chr6-84750622-1	chr6	84750122	84751122	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 19 of 21)	intron (NM_177077, intron 19 of 21)	-156714.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	18.88	22.12	9.25	14.84	20.53	17.68	17.96	19.9	23.73
Merged-chr11-49210722-1	chr11	49210222	49211222	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024846, intron 1 of 4)	intron (NM_001024846, intron 1 of 4)	7222.0	NM_009562	22720.0	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	13.73	27.19	7.4	25.64	19.59	26.53	31.69	25.2	25.61
Merged-chr15-27927046-1	chr15	27926546	27927546	+	632.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	98802.0	NM_001081302	223435.0	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	73.79	76.49	29.6	104.58	59.25	50.64	46.47	39.35	20.61
Merged-chr8-122618113-3	chr8	122617581	122618581	+	632.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4294.0	NR_105821	102466643.0		NR_105821	ENSMUSG00000098500	Mir6396	Gm27938|mmu-mir-6396	microRNA 6396	ncRNA	0.57	1.84	0.92	2.02	0.47	6.43	3.17	1.33	0.62
Merged-chr4-133570264-2	chr4	133569753	133570753	+	632.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92B|LTR|ERV1	-4492.0	NM_172876	242691.0	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	2.29	2.76	4.62	7.42	0.93	1.61	3.17	2.21	2.5
Merged-chr3-89474033-2	chr3	89473544	89474544	+	632.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	14473.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	5.15	3.69	3.7	2.7	3.73	8.04	3.17	0.88	4.37
Merged-chr15-75089349-2	chr15	75088852	75089852	+	632.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22585.0	NM_001357693	100041546.0	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	1.14	1.84	1.85	4.72	0.0	1.61	1.06	1.33	0.62
Merged-chr19-43673756-3	chr19	43673231	43674231	+	632.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145156, intron 1 of 3)	intron (NM_145156, intron 1 of 3)	1150.0	NM_145156	246696.0	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	72.08	46.54	25.9	34.41	37.79	22.51	62.31	45.99	33.72
Merged-chr4-47319024-1	chr4	47318524	47319524	+	632.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16C|LTR|ERVL	-34198.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	26.31	17.97	45.32	31.71	20.06	40.99	30.63	30.95	24.36
Merged-chr15-77905452-3	chr15	77904965	77905965	+	632.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23529.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	2.29	5.53	7.4	1.35	5.13	11.25	3.17	4.42	2.5
Merged-chr18-60382632-2	chr18	60382133	60383133	+	632.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001146275, exon 2 of 3)	5' UTR (NM_001146275, exon 2 of 3)	6604.0	NM_001146275	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	49.77	75.11	27.75	43.18	57.85	79.58	53.87	49.08	54.96
Merged-chr6-115887045-2	chr6	115886461	115887461	+	632.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031177, exon 9 of 29)	exon (NM_031177, exon 9 of 29)	33433.0	NM_031177	81896.0	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	2.29	5.53	5.55	5.4	3.27	7.23	2.11	6.19	6.25
Merged-chr19-56811709-3	chr19	56811193	56812193	+	632.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_170757, intron 1 of 14)	intron (NM_170757, intron 1 of 14)	1990.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	6.29	7.37	5.55	14.84	5.13	13.66	7.39	0.44	7.49
Merged-chr9-7878438-3	chr9	7877931	7878931	+	632.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5261.0	NM_007464	11796.0	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	12.01	8.29	9.25	5.4	5.6	4.82	11.62	12.38	5.0
Merged-chr13-10540383-2	chr13	10539878	10540878	+	632.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-179575.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.57	1.38	5.55	4.05	4.2	8.04	1.06	2.65	3.75
Merged-chr3-131869501-2	chr3	131869010	131870010	+	632.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-215782.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	9.72	5.53	14.8	8.1	12.13	17.68	21.12	10.17	26.85
Merged-chr19-3924601-2	chr19	3924115	3925115	+	632.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026316, intron 1 of 9)	intron (NM_026316, intron 1 of 9)	5101.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	33.18	26.26	27.75	41.83	22.39	48.23	27.46	24.32	13.74
Merged-chr9-62936085-1	chr9	62935585	62936585	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 2 of 13)	intron (NM_019663, intron 2 of 13)	44794.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	42.33	33.64	32.37	50.6	41.99	16.08	65.48	56.16	21.23
Merged-chr4-3085608-1	chr4	3085108	3086108	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86475.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	4.0	6.91	10.17	6.75	5.6	3.22	2.11	3.1	3.75
Merged-chr17-81510878-1	chr17	81510378	81511378	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	227509.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	5.72	5.07	4.62	12.14	7.0	8.04	8.45	2.21	1.25
Merged-chr18-80705354-1	chr18	80704854	80705854	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198429, intron 1 of 9)	intron (NM_198429, intron 1 of 9)	2819.0	NM_001164111	18018.0	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	85.81	92.16	50.87	79.62	56.91	67.52	58.09	64.56	53.08
Merged-chr1-167551861-1	chr1	167551361	167552361	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46501.0	NM_009107	20183.0	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.0	1.84	1.85	2.02	5.6	0.0	1.06	0.88	0.0
Merged-chr3-116170255-1	chr3	116169755	116170755	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-40567.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	6.29	3.23	4.62	6.07	2.33	8.04	4.22	1.77	8.12
Merged-chr4-32391470-1	chr4	32390970	32391970	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25965.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	2.29	2.76	1.85	0.67	7.46	0.0	1.06	0.44	2.5
Merged-chr3-60569601-1	chr3	60569101	60570101	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	68422.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	25.17	51.15	25.9	33.06	39.19	59.48	41.19	34.49	22.48
Merged-chr14-34778036-1	chr14	34777536	34778536	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42100.0	NM_008166	14803.0	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	5.15	0.0	1.85	2.02	0.47	6.43	3.17	0.88	1.25
Merged-chr18-56832702-1	chr18	56832202	56833202	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	92846.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	12.01	9.22	11.1	4.05	6.06	4.82	2.11	3.54	3.75
Merged-chr11-23727701-2	chr11	23727212	23728212	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033654, intron 16 of 17)	intron (NM_001033654, intron 16 of 17)	43258.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	20.02	22.12	35.15	20.92	20.99	32.15	33.8	22.55	21.86
Merged-chr18-23821703-1	chr18	23821203	23822203	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153058, intron 1 of 6)	intron (NM_153058, intron 1 of 6)	17733.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	4.58	2.3	3.7	5.4	3.73	9.65	6.34	6.19	13.74
Merged-chr15-53785604-1	chr15	53785104	53786104	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	116832.0	NM_177225	320679.0	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	2.86	5.53	0.0	4.05	3.27	3.22	2.11	5.31	6.25
Merged-chr4-140905505-1	chr4	140905005	140906005	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008812)	promoter-TSS (NM_008812)	-855.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	4.58	1.84	7.4	6.75	2.33	0.0	3.17	0.88	3.75
Merged-chr12-103326767-1	chr12	103326267	103327267	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023049, intron 7 of 9)	MIR|SINE|MIR	11808.0	NM_001195726	100504156.0	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	9.72	6.45	5.55	8.1	5.13	4.82	7.39	0.88	1.25
Merged-chr2-51509412-1	chr2	51508912	51509912	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-71512.0	NR_130155	73375.0	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	3.43	2.76	2.77	2.7	0.47	3.22	5.28	6.19	2.5
Merged-chr15-62433778-1	chr15	62433278	62434278	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214327.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	3.43	3.23	8.32	4.05	3.73	4.82	3.17	1.77	3.75
Merged-chr4-36186635-1	chr4	36186135	36187135	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166000, intron 4 of 8)	intron (NM_001166000, intron 4 of 8)	-341431.0	NM_175516	242384.0	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	3.43	2.3	3.7	4.72	6.06	6.43	10.56	2.21	5.0
Merged-chr11-100408245-1	chr11	100407745	100408745	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_176830)	TTS (NM_176830)	6574.0	NM_176830	66180.0	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	8.01	2.76	3.7	2.7	5.13	3.22	0.0	0.44	5.0
Merged-chr17-81668647-1	chr17	81668147	81669147	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104580, intron 1 of 8)	intron (NR_104580, intron 1 of 8)	69740.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	57.78	29.49	52.72	46.56	28.46	28.94	60.2	35.82	34.97
Merged-chr6-123263364-3	chr6	123262877	123263877	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163161, intron 1 of 5)	intron (NM_001163161, intron 1 of 5)	1270.0	NM_010819	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	11.44	14.75	6.47	14.84	16.79	12.06	13.73	10.17	11.24
Merged-chr5-99386733-1	chr5	99386233	99387233	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-133806.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	11.44	22.12	15.72	24.96	13.06	29.74	20.07	18.57	12.49
Merged-chr11-16987541-1	chr11	16987041	16988041	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019549, exon 6 of 10)	exon (NM_019549, exon 6 of 10)	21177.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	57.78	74.65	45.32	68.82	50.38	68.32	64.43	60.58	27.48
Merged-chr12-86024557-1	chr12	86024057	86025057	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	intron (NM_001081423, intron 33 of 33)	54484.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	6.29	3.23	5.55	4.05	3.73	8.04	7.39	8.4	5.62
Merged-chr1-75209441-1	chr1	75208941	75209941	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_029010, exon 2 of 17)	5' UTR (NM_029010, exon 2 of 17)	1337.0	NM_029010	74577.0	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	30.32	21.66	19.42	52.63	46.18	54.66	42.25	40.68	34.97
Merged-chr11-118443428-2	chr11	118442935	118443935	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001204130)	promoter-TSS (NM_001204130)	-99.0	NM_001204130	56745.0	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	5.15	1.38	1.85	5.4	2.8	4.82	4.22	1.33	2.5
Merged-chr11-16589514-1	chr11	16589014	16590014	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81030.0	NM_001109971	20335.0	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	4.0	6.91	1.85	6.07	7.0	10.45	1.06	4.86	0.0
Merged-chr2-101174823-1	chr2	101174323	101175323	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-449925.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	6.29	8.29	11.1	16.19	8.4	22.51	4.22	13.27	8.74
Merged-chr19-46315409-1	chr19	46314909	46315909	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028627, intron 12 of 17)	intron (NM_028627, intron 12 of 17)	9479.0	NM_001177370	18034.0	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	7.44	2.3	2.77	3.37	4.67	3.22	11.62	6.63	3.75
Merged-chr16-5447661-1	chr16	5447161	5448161	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-191705.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	17.16	17.05	8.32	15.52	10.26	6.43	2.11	2.65	7.49
Merged-chr10-88680435-1	chr10	88679935	88680935	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011461, intron 2 of 5)	intron (NM_011461, intron 2 of 5)	2588.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	45.19	47.46	30.52	41.16	51.78	40.19	58.09	46.43	26.85
Merged-chr12-79193675-1	chr12	79193175	79194175	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MURVY-int|LTR|ERV1	-1820.0	NM_021557	17252.0	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c|ralR1	retinol dehydrogenase 11	protein-coding	3.43	1.84	0.0	4.72	0.47	3.22	3.17	3.54	0.62
Merged-chr4-55398364-1	chr4	55397864	55398864	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20478.0	NR_040674	100415914.0	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	-	predicted gene 12505	ncRNA	1.72	2.76	2.77	4.05	1.87	0.0	1.06	6.63	0.0
Merged-chr15-62450011-1	chr15	62449511	62450511	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-230560.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	9.72	11.52	1.85	11.47	8.4	4.82	7.39	6.63	3.75
Merged-chr11-69575398-1	chr11	69574898	69575898	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	3926.0	NM_144824	216853.0	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	4.0	3.23	0.0	2.02	4.2	4.82	7.39	3.54	1.25
Merged-chr4-133197105-1	chr4	133196605	133197605	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	1450.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	5.72	9.68	12.02	9.45	9.8	17.68	6.34	3.98	13.74
Merged-chr1-185294400-1	chr1	185293900	185294900	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198653, intron 18 of 22)	RSINE1|SINE|B4	-18919.0	NR_029580	387189.0		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	31.46	18.43	11.1	59.38	41.52	29.74	26.4	29.18	5.62
Merged-chr7-128019397-1	chr7	128018897	128019897	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	15019.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	3.43	2.3	1.85	1.35	3.73	3.22	2.11	3.54	1.25
Merged-chr17-46266099-1	chr17	46265599	46266599	+	632.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252475, intron 1 of 8)	intron (NM_001252475, intron 1 of 8)	11934.0	NM_001111142	224813.0	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	3.43	4.61	1.85	4.72	1.87	0.0	7.39	0.0	5.0
Merged-chr13-81104038-1	chr13	81103538	81104538	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 88 of 89)	intron (NM_054053, intron 88 of 89)	139964.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.86	6.45	5.55	4.05	3.73	4.02	7.39	5.75	4.37
Merged-chr1-56795335-1	chr1	56794835	56795835	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_139146, exon 11 of 11)	3' UTR (NM_139146, exon 11 of 11)	-157884.0	NM_027661	71066.0	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	9.15	5.99	3.7	8.1	3.27	9.65	6.34	2.65	5.0
Merged-chr2-26482932-1	chr2	26482432	26483432	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-12813.0	NR_105962	102465602.0		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	176.19	154.82	129.49	171.38	111.96	120.57	122.52	133.09	70.57
Merged-chr7-3303482-1	chr7	3302982	3303982	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011102)	promoter-TSS (NM_011102)	-50.0	NM_001291434	18752.0	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	6.29	2.76	3.7	1.35	0.0	4.02	4.22	1.33	1.25
Merged-chr13-75823943-1	chr13	75823443	75824443	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15942.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	57.78	88.93	84.17	62.07	64.84	103.69	53.87	57.04	41.22
Merged-chr4-72232384-1	chr4	72231884	72232884	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31140.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	10.3	4.15	2.77	4.05	2.8	6.43	2.11	0.88	8.74
Merged-chr17-46341841-1	chr17	46341341	46342341	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-13818.0	NM_170680	224814.0	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	98.97	84.78	59.2	75.57	69.04	102.08	105.62	121.15	93.68
Merged-chr7-102313350-1	chr7	102312850	102313850	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	45526.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	15.45	11.06	4.62	12.14	7.46	1.61	13.73	10.17	10.62
Merged-chr7-100817365-1	chr7	100816865	100817865	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178764, intron 4 of 8)	ID_B1|SINE|B4	46048.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	26.31	26.73	25.9	27.66	20.53	38.58	19.01	20.34	28.73
Merged-chr13-31808194-1	chr13	31807694	31808694	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008592, exon 1 of 1)	exon (NM_008592, exon 1 of 1)	1548.0	NM_008592	17300.0	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	2.29	0.92	0.0	2.02	1.87	3.22	1.06	0.44	3.75
Merged-chr13-6469561-1	chr13	6469061	6470061	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78596.0	NM_145131	69617.0	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	5.15	2.3	5.55	2.7	7.0	10.45	3.17	1.77	3.75
Merged-chr9-89974797-1	chr9	89974297	89975297	+	632.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011245, exon 9 of 27)	exon (NM_011245, exon 9 of 27)	65022.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	6.86	2.3	3.7	1.35	1.4	0.0	3.17	3.98	4.37
Merged-chr17-12742656-1	chr17	12742156	12743156	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027773, intron 1 of 2)	intron (NR_027773, intron 1 of 2)	1345.0	NR_027784	104103.0	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	7.44	1.84	5.55	0.67	1.4	1.61	0.0	0.88	2.5
Merged-chr13-101851022-1	chr13	101850522	101851522	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82805.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	29.17	37.78	26.82	31.04	18.66	30.54	31.69	43.33	14.99
Merged-chr4-15268050-1	chr4	15267550	15268550	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181401, intron 1 of 2)	intron (NM_181401, intron 1 of 2)	2230.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	16.59	31.79	14.8	28.34	28.46	23.31	13.73	20.78	14.36
Merged-chr14-103537550-1	chr14	103537050	103538050	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022886, intron 5 of 30)	intron (NM_022886, intron 5 of 30)	24209.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	5.72	2.3	1.85	5.4	1.4	0.0	4.22	3.54	1.25
Merged-chr11-103403524-1	chr11	103403024	103404024	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	9140.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	103.54	79.72	99.89	174.08	104.5	81.99	176.38	165.37	79.32
Merged-chr11-53868621-2	chr11	53868119	53869119	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011396, intron 7 of 9)	ID_B1|SINE|B4	-9363.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	6.86	4.15	1.85	14.84	1.4	0.0	9.51	5.31	0.0
Merged-chr18-82822457-1	chr18	82821957	82822957	+	632.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33440.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	45.76	44.24	44.4	42.51	34.99	27.33	70.76	82.69	20.61
Merged-chr9-90077036-3	chr9	90076531	90077531	+	631.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007801)	TTS (NM_007801)	22764.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	1.72	3.23	9.25	7.42	0.47	7.23	3.17	2.21	3.75
Merged-chr5-145140929-3	chr5	145140407	145141407	+	631.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033313)	promoter-TSS (NM_001033313)	470.0	NM_001310770	231889.0	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	133.29	162.66	100.82	103.23	131.56	120.57	154.2	109.22	78.69
Merged-chr6-29735497-3	chr6	29735008	29736008	+	631.883362	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_176996)	promoter-TSS (NM_176996)	11.0	NM_176996	319757.0	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	17.73	11.06	21.27	26.31	14.46	8.04	21.12	9.73	6.87
Merged-chr1-106232049-2	chr1	106231538	106232538	+	631.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	60169.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	134.43	128.56	89.72	135.62	140.89	114.94	119.35	112.31	62.45
Merged-chr9-118082947-2	chr9	118082463	118083463	+	631.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026442, intron 2 of 3)	intron (NM_026442, intron 2 of 3)	42441.0	NM_013727	27215.0	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	10.87	2.76	6.47	4.05	3.73	8.04	4.22	6.19	8.74
Merged-chr11-30799687-2	chr11	30799183	30800183	+	631.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134013, intron 3 of 46)	B3A|SINE|B2	27908.0	NM_134013	103554.0	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	5.72	4.15	3.7	4.72	5.13	3.22	7.39	0.88	2.5
Merged-chr4-62764269-1	chr4	62763769	62764769	+	631.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90295.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	1.72	0.0	9.25	2.7	2.33	3.22	2.11	0.88	1.25
Merged-chr3-96562639-3	chr3	96562121	96563121	+	631.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023719)	TTS (NM_023719)	4180.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	45.76	41.47	36.07	33.74	30.32	46.62	43.3	59.69	54.33
Merged-chr9-45260928-1	chr9	45260428	45261428	+	631.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	MIRb|SINE|MIR	5779.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	40.04	35.02	37.92	62.75	59.71	85.2	73.93	42.01	36.22
Merged-chr9-66615258-2	chr9	66614760	66615760	+	631.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22145.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	24.6	15.21	7.4	18.22	11.66	16.88	15.84	11.05	12.49
Merged-chr12-111746220-2	chr12	111745703	111746703	+	631.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	intron (NM_001163388, intron 4 of 5)	-12646.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	22.88	21.66	24.97	12.14	14.93	22.51	16.9	18.57	28.73
Merged-chr15-6570633-3	chr15	6570144	6571144	+	631.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9203.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	110.98	144.23	110.99	134.27	80.24	136.64	162.65	155.64	131.78
Merged-chr13-110558059-1	chr13	110557559	110558559	+	631.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	163015.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	12.01	5.53	3.7	6.75	6.06	3.22	29.57	45.99	29.98
Merged-chr8-85085865-1	chr8	85085365	85086365	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010764, intron 4 of 23)	intron (NM_010764, intron 4 of 23)	2596.0	NM_010764	17159.0	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	8.01	10.14	4.62	16.87	15.39	38.58	15.84	21.22	6.25
Merged-chr3-116601140-1	chr3	116600640	116601640	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030016, intron 1 of 11)	intron (NM_030016, intron 1 of 11)	6182.0	NM_001289571	72776.0	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	13.73	7.37	6.47	10.8	0.47	4.82	4.22	4.86	5.0
Merged-chrX-77356591-1	chrX	77356091	77357091	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154636.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	4.0	1.38	1.85	4.05	5.13	6.43	3.17	2.21	1.25
Merged-chr9-63604441-1	chr9	63603941	63604941	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151671, intron 1 of 9)	intron (NR_151671, intron 1 of 9)	1795.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	34.9	26.73	35.15	64.1	31.26	32.15	99.28	79.59	23.73
Merged-chrX-98919633-2	chrX	98919142	98920142	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18139.0	NM_207633	77929.0	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.57	3.23	0.92	3.37	0.93	0.0	0.0	1.33	0.0
Merged-chr3-104714452-2	chr3	104713976	104714976	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	63071.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.57	0.92	1.85	4.72	1.87	4.82	2.11	1.33	3.75
Merged-chr7-99374544-2	chr7	99374048	99375048	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-6970.0	NM_001362168	233552.0	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	2.29	1.38	0.0	7.42	0.0	0.0	3.17	0.44	6.25
Merged-chr14-46831503-1	chr14	46831003	46832003	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-631.0	NM_001360454	68755.0	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	98.97	115.2	67.52	105.93	115.69	94.85	149.98	156.53	83.06
Merged-chr11-90418161-1	chr11	90417661	90418661	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-27244.0	NM_172563	217082.0	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	2.29	2.3	1.85	4.72	0.0	3.22	0.0	0.44	2.5
Merged-chr12-73585287-1	chr12	73584787	73585787	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008856, exon 1 of 14)	exon (NM_008856, exon 1 of 14)	491.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	73.22	83.86	82.32	98.51	108.7	103.69	98.23	79.59	54.33
Merged-chr1-134151876-2	chr1	134151378	134152378	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001284524)	TTS (NM_001284524)	-30526.0	NM_007695	12654.0	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.57	1.38	3.7	1.35	6.06	0.8	2.11	0.0	1.25
Merged-chrX-108835330-1	chrX	108834830	108835830	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081477)	promoter-TSS (NM_001081477)	852.0	NR_015493	69964.0	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	13.16	15.67	6.47	14.84	14.46	12.06	17.96	9.29	8.12
Merged-chr6-120457287-2	chr6	120456812	120457812	+	631.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-5885.0	NM_008359	16172.0	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	3.43	1.84	1.85	8.1	1.87	1.61	2.11	1.77	1.25
Merged-chr5-137338824-1	chr5	137338324	137339324	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1964.0	NM_001359611	83704.0	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	10.3	6.91	9.25	8.1	10.73	17.68	9.51	4.86	12.49
Merged-chr12-89291449-2	chr12	89290930	89291930	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198587, intron 7 of 19)	intron (NM_001198587, intron 7 of 19)	338040.0	NM_172544	18191.0	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.57	2.76	5.55	4.72	1.4	4.82	6.34	1.77	3.12
Merged-chr2-45244880-2	chr2	45244385	45245385	+	631.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127443.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	156.17	165.88	108.22	160.58	155.35	151.92	162.65	137.07	141.77
Merged-chr2-118900468-2	chr2	118899971	118900971	+	631.483337	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1144.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	2.86	3.23	9.25	4.72	5.13	2.41	3.17	3.54	1.25
Merged-chr7-79368885-3	chr7	79368388	79369388	+	631.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18139.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	2.86	1.84	1.85	2.02	3.73	0.8	3.17	2.65	2.5
Merged-chr11-59219162-2	chr11	59218681	59219681	+	631.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	B3A|SINE|B2	8981.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	18.88	14.75	17.57	24.96	17.73	31.35	17.96	11.5	19.98
Merged-chr5-139750704-2	chr5	139750213	139751213	+	631.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026748)	TTS (NM_026748)	-14380.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	5.72	0.92	5.55	3.37	0.93	4.82	1.06	2.21	0.0
Merged-chr10-121370961-1	chr10	121370461	121371461	+	631.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029364, intron 1 of 13)	B3|SINE|B2	5871.0	NM_029364	75612.0	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	6.86	15.21	16.65	8.1	10.73	19.29	10.56	9.73	14.36
Merged-chr16-91740714-1	chr16	91740214	91741214	+	631.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11343.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	51.48	51.15	24.05	51.28	49.45	44.21	48.58	38.47	28.1
Merged-chr19-53945505-3	chr19	53945025	53946025	+	631.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001195338)	promoter-TSS (NM_001195338)	649.0	NM_019658	56392.0	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	69.22	34.1	68.45	56.0	20.99	40.99	51.75	26.97	48.71
Merged-chr1-36923216-2	chr1	36922720	36923720	+	631.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018872, intron 1 of 40)	B3|SINE|B2	16307.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	45.19	57.14	40.7	50.6	44.32	35.37	31.69	45.99	28.1
Merged-chr2-165957657-2	chr2	165957165	165958165	+	631.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-34972.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	62.35	65.89	38.85	72.19	68.11	55.46	119.35	133.53	76.19
Merged-chr16-24012371-2	chr16	24011941	24012941	+	631.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23589.0	NM_009744	12053.0	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	5.72	3.69	0.0	6.75	0.93	8.04	2.11	1.33	2.5
Merged-chr12-32920412-2	chr12	32919930	32920930	+	631.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_044986, intron 5 of 5)	intron (NR_044986, intron 5 of 5)	33359.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	5.15	4.61	1.85	7.42	5.13	4.82	3.17	1.33	4.37
Merged-chr10-34279428-2	chr10	34278919	34279919	+	631.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2771.0	NM_009433	22110.0	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	25.17	10.6	13.87	12.82	9.33	4.82	3.17	11.05	5.0
Merged-chr4-150837602-2	chr4	150837109	150838109	+	631.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040649, intron 3 of 3)	intron (NR_040649, intron 3 of 3)	-16187.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.43	4.61	0.0	4.05	3.27	5.63	3.17	2.65	0.0
Merged-chr2-5130313-2	chr2	5129811	5130811	+	631.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7465.0	NM_028804	74186.0	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	5.15	2.76	5.55	1.35	3.73	3.22	3.17	6.19	3.75
Merged-chrX-150981786-1	chrX	150981286	150982286	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	35507.0	NM_001168600	237107.0	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	5.72	5.07	12.95	2.02	4.67	3.22	3.17	4.42	1.87
Merged-chr10-80604228-1	chr10	80603728	80604728	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019575, intron 1 of 6)	intron (NM_019575, intron 1 of 6)	1346.0	NM_019575	56214.0	Mm.273170	NM_019575	ENSMUSG00000113949	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	24.03	23.5	6.47	35.09	29.39	40.19	38.02	30.07	22.48
Merged-chr10-99485771-2	chr10	99485239	99486239	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-123432.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	5.72	7.83	24.97	14.17	6.06	18.49	5.28	9.29	10.62
Merged-chr3-38571339-1	chr3	38570839	38571839	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-86523.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	2.86	4.61	5.55	1.35	3.27	0.0	2.11	3.98	2.5
Merged-chr5-95914833-1	chr5	95914333	95915333	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42106.0	NM_018866	55985.0	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	20.02	48.38	35.15	41.16	39.19	51.44	12.67	15.03	24.36
Merged-chr8-123022877-1	chr8	123022377	123023377	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	19407.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	24.03	10.14	11.1	8.77	11.66	12.06	9.51	10.17	16.86
Merged-chr4-55364529-1	chr4	55364029	55365029	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	B3|SINE|B2	14487.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	22.88	26.26	37.0	24.29	28.46	18.49	19.01	22.99	38.72
Merged-chr4-3496227-1	chr4	3495727	3496727	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40863.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	18.88	12.44	5.55	22.27	16.79	0.0	14.79	7.52	6.25
Merged-chr11-72428836-2	chr11	72428330	72429330	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6696.0	NM_027819	71522.0	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	4.58	3.69	4.62	9.45	1.87	1.61	6.34	6.19	1.87
Merged-chr19-10022071-1	chr19	10021571	10022571	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	intron (NR_153790, intron 1 of 10)	3877.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	38.33	27.65	43.47	33.74	34.99	55.46	50.7	30.95	23.11
Merged-chr15-101317982-1	chr15	101317482	101318482	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24770.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	12.01	12.9	12.95	12.82	7.46	16.88	14.79	3.1	16.86
Merged-chr15-80706836-1	chr15	80706336	80707336	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NM_144812	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	20.02	21.66	7.4	19.57	15.86	12.06	19.01	19.01	6.87
Merged-chrX-7288956-1	chrX	7288456	7289456	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	30402.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	11.44	11.98	3.7	10.12	8.4	8.04	7.39	13.27	12.49
Merged-chr3-59220637-1	chr3	59220137	59221137	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357010, intron 1 of 3)	intron (NM_001357010, intron 1 of 3)	-9755.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	20.59	31.33	30.52	27.66	27.99	26.53	35.91	35.37	17.49
Merged-chr1-36066427-1	chr1	36065927	36066927	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	9.72	6.45	5.55	11.47	3.73	4.82	8.45	3.1	5.62
Merged-chr2-124577589-1	chr2	124577089	124578089	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-32707.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	11.44	16.13	9.25	20.24	14.46	21.7	13.73	6.63	5.62
Merged-chr15-39975083-1	chr15	39974583	39975583	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12434.0	NR_045719	105976.0	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	6.29	9.22	5.55	16.87	20.53	8.04	6.34	3.98	6.25
Merged-chr2-78841945-1	chr2	78841445	78842445	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F1|LTR|ERVL-MaLR	-27102.0	NM_009454	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.0	0.92	1.85	4.05	3.73	0.0	2.11	7.07	1.25
Merged-chr1-85280547-1	chr1	85280047	85281047	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9981.0	NM_001037909	620078.0	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik	RIKEN cDNA C130026I21 gene	protein-coding	8.58	10.6	18.5	15.52	16.79	21.7	1.06	0.0	31.23
Merged-chr18-27021758-1	chr18	27021258	27022258	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1267601.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	7.44	6.91	2.77	11.47	8.4	11.25	14.79	12.82	10.62
Merged-chr8-95534128-1	chr8	95533628	95534628	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172914)	promoter-TSS (NM_172914)	28.0	NM_172914	244608.0	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	1.72	4.61	3.7	3.37	1.4	3.22	4.22	2.21	9.37
Merged-chr11-69031897-1	chr11	69031397	69032397	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281465, intron 15 of 22)	intron (NM_001281465, intron 15 of 22)	-13740.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	52.06	69.58	71.22	48.58	44.32	44.21	65.48	66.33	72.45
Merged-chr15-98571241-1	chr15	98570741	98571741	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028442)	TTS (NR_028442)	237.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	4.58	3.69	15.72	12.14	2.33	1.61	2.11	3.98	6.25
Merged-chr6-129713004-1	chr6	129712504	129713504	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001012520, intron 1 of 5)	intron (NM_001012520, intron 1 of 5)	4128.0	NM_001012520	503550.0	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	9.72	11.06	24.05	15.52	10.73	23.31	17.96	11.94	23.11
Merged-chr19-4439409-1	chr19	4438909	4439909	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045990)	promoter-TSS (NR_045990)	34.0	NM_007485	11854.0	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	6.86	3.23	1.85	5.4	2.33	1.61	1.06	1.77	5.62
Merged-chr4-3790018-1	chr4	3789518	3790518	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010747, exon 13 of 13)	3' UTR (NM_010747, exon 13 of 13)	45637.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	9.15	4.15	12.95	4.72	3.73	11.25	6.34	5.31	5.0
Merged-chr11-60559406-1	chr11	60558906	60559906	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_172943)	TTS (NM_172943)	21723.0	NM_172943	268420.0	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	1.14	3.69	3.7	7.42	4.67	0.8	0.0	2.21	2.5
Merged-chr1-156617434-1	chr1	156616934	156617934	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136104, intron 1 of 12)	(GGAA)n|Simple_repeat|Simple_repeat	56905.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	10.87	10.6	7.4	28.34	23.33	6.43	21.12	14.59	9.99
Merged-chr7-69993149-1	chr7	69992649	69993649	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	344673.0	NR_131145	624549.0	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	Gm44536	predicted gene, 29683	ncRNA	4.0	0.46	0.0	12.82	8.86	3.22	9.51	3.98	9.37
Merged-chr5-123253384-1	chr5	123252884	123253884	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	25194.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	1.14	9.68	9.25	9.45	10.73	15.27	6.34	4.86	6.25
Merged-chr17-23534062-1	chr17	23533562	23534562	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16737.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	2.29	2.3	1.85	0.0	0.93	1.61	2.11	0.88	1.25
Merged-chr17-56132038-1	chr17	56131538	56132538	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001130456, intron 3 of 16)	intron (NM_001130456, intron 3 of 16)	1814.0	NM_013662	20359.0	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	8.01	7.83	6.47	4.05	2.33	4.82	3.17	0.88	1.25
Merged-chr5-99239310-1	chr5	99238810	99239810	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145839, intron 4 of 13)	intron (NM_145839, intron 4 of 13)	13617.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	39.47	36.86	29.6	22.27	19.13	28.13	28.52	33.16	14.99
Merged-chr5-64231923-1	chr5	64231423	64232423	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1566.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	38.33	88.01	33.3	60.72	77.91	89.22	141.53	139.28	69.95
Merged-chr14-29969098-1	chr14	29968598	29969598	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019979, intron 1 of 4)	B1_Mur2|SINE|Alu	718.0	NM_019979	80795.0	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	199.07	219.79	121.17	168.0	170.28	141.47	177.44	176.87	72.45
Merged-chrX-101416752-1	chrX	101416252	101417252	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177985, intron 4 of 23)	intron (NM_001177985, intron 4 of 23)	3162.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	8.58	5.53	9.25	1.35	3.27	4.82	10.56	2.21	3.75
Merged-chr5-144013906-2	chr5	144013404	144014404	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177682, intron 1 of 14)	intron (NM_177682, intron 1 of 14)	949.0	NM_177682	231874.0	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	20.59	35.94	38.85	18.22	24.26	32.96	34.85	34.05	36.22
Merged-chr2-52891984-2	chr2	52891486	52892486	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	34118.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	33.18	31.33	27.75	37.78	42.92	28.13	19.01	22.55	13.12
Merged-chr10-17924320-1	chr10	17923820	17924820	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033432, intron 1 of 3)	MTD|LTR|ERVL-MaLR	23747.0	NM_001033432	380629.0	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	4.0	5.07	1.85	2.02	1.4	4.82	10.56	7.07	5.0
Merged-chr12-85698611-2	chr12	85698111	85699111	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 2 of 2)	intron (NM_016767, intron 2 of 2)	11891.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	40.04	36.4	44.4	63.42	45.25	43.4	44.36	42.89	29.98
Merged-chr8-67956770-1	chr8	67956270	67957270	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177698, intron 3 of 14)	intron (NM_177698, intron 3 of 14)	17804.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	15.45	15.67	11.1	21.59	27.99	27.33	9.51	22.55	11.24
Merged-chr14-101607668-1	chr14	101607168	101608168	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081278, intron 1 of 18)	intron (NM_001081278, intron 1 of 18)	1523.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	16.02	2.76	6.47	6.75	7.0	6.43	3.17	5.31	3.75
Merged-chr19-4628998-2	chr19	4628506	4629506	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033447, intron 13 of 14)	intron (NM_001033447, intron 13 of 14)	-3389.0	NM_023131	19671.0	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	8.58	10.6	3.7	4.72	3.27	4.82	10.56	1.33	5.0
Merged-chr5-125391204-1	chr5	125390704	125391704	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1187.0	NM_019639	22190.0	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	304.9	528.52	235.86	340.06	509.43	331.16	379.17	574.38	311.01
Merged-chr13-34647763-1	chr13	34647263	34648263	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	4918.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	14.3	11.98	15.72	8.1	5.13	17.68	7.39	4.86	7.49
Merged-chr7-27436921-1	chr7	27436421	27437421	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032610, intron 2 of 35)	intron (NM_032610, intron 2 of 35)	9668.0	NM_032610	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.57	3.69	6.47	6.75	7.0	14.47	2.11	0.88	5.0
Merged-chr6-97292993-1	chr6	97292493	97293493	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-40213.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	16.02	11.06	18.5	16.87	6.06	8.84	21.12	17.24	17.49
Merged-chr16-22798721-1	chr16	22798221	22799221	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12689.0	NM_009967	12970.0	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	5.15	1.84	0.92	2.02	4.2	1.61	2.11	3.1	2.5
Merged-chr12-69373946-1	chr12	69373446	69374446	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007481, exon 2 of 2)	3' UTR (NM_007481, exon 2 of 2)	1796.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	29.17	35.48	23.12	35.09	34.99	17.68	32.74	38.03	24.98
Merged-chr8-84256708-1	chr8	84256208	84257208	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026423, intron 1 of 4)	intron (NM_026423, intron 1 of 4)	616.0	NM_026423	67873.0	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	53.77	26.26	32.37	63.42	40.59	43.4	42.25	25.2	23.11
Merged-chr9-46314647-2	chr9	46314157	46315157	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183104, intron 3 of 12)	intron (NM_183104, intron 3 of 12)	5329.0	NM_183104	74361.0	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	6.86	1.84	0.0	6.07	2.33	0.0	3.17	1.33	5.0
Merged-chr8-122775471-1	chr8	122774971	122775971	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_144932)	promoter-TSS (NM_144932)	-15.0	NM_144932	257633.0	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	16.59	13.82	12.95	10.12	11.2	9.65	12.67	12.38	8.12
Merged-chr17-64751362-2	chr17	64750854	64751854	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008549, intron 21 of 21)	intron (NM_008549, intron 21 of 21)	-15757.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	8.58	13.82	13.87	10.12	11.66	14.47	6.34	6.63	13.74
Merged-chr13-44272012-1	chr13	44271512	44272512	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-55525.0	NR_045088	100503592.0	Mm.184925	NR_045088	ENSMUSG00000113186	A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	3.43	5.53	9.25	10.12	4.2	8.04	5.28	6.19	4.37
Merged-chr16-26349011-1	chr16	26348511	26349511	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22828.0	NM_016674	12737.0	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	2.29	2.3	3.7	1.35	3.27	3.22	2.11	3.98	0.0
Merged-chr9-96375506-1	chr9	96375006	96376006	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-11075.0	NM_001357212	11933.0	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	21.17	26.26	22.2	23.62	9.8	28.13	28.52	48.2	34.35
Merged-chr6-129331838-2	chr6	129331349	129332349	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199034)	promoter-TSS (NM_199034)	-68.0	NM_199034	381816.0	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	4.0	3.69	0.0	7.42	1.87	5.63	7.39	3.1	1.25
Merged-chr7-67232669-1	chr7	67232169	67233169	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291191, exon 11 of 11)	3' UTR (NM_001291191, exon 11 of 11)	10053.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	6.29	7.37	7.4	3.37	3.27	7.23	3.17	4.42	3.75
Merged-chr19-55703682-1	chr19	55703182	55704182	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1478.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	28.6	21.66	24.97	27.66	12.13	23.31	12.67	7.07	5.0
Merged-chr5-5336719-1	chr5	5336219	5337219	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	L1MB8|LINE|L1	43532.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	13.73	27.19	20.35	8.1	7.46	6.43	11.62	15.48	9.37
Merged-chr2-94263078-1	chr2	94262578	94263578	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1679.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	1.72	0.92	3.7	2.7	1.4	0.0	1.06	1.33	5.0
Merged-chr18-53937392-1	chr18	53936892	53937892	+	631.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_152809, intron 10 of 12)	intron (NM_152809, intron 10 of 12)	75279.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	8.01	8.75	7.4	8.77	8.86	1.61	6.34	3.54	0.0
Merged-chrX-56322244-1	chrX	56321744	56322744	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4636.0	NR_038168	72030.0	Mm.426148	NR_038168	ENSMUSG00000085114	1600025M17Rik	Gm394	RIKEN cDNA 1600025M17 gene	ncRNA	5.15	2.3	1.85	4.05	3.73	0.0	0.0	0.0	0.0
Merged-chr1-37996310-1	chr1	37995810	37996810	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172054, intron 1 of 4)	MTD|LTR|ERVL-MaLR	898.0	NM_172054	98258.0	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	33.18	33.64	40.7	56.0	39.19	40.19	59.15	57.04	25.61
Merged-chr2-33847632-1	chr2	33847132	33848132	+	631.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175184, intron 2 of 9)	L1MB7|LINE|L1	40314.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	2.86	3.69	1.85	14.84	9.8	17.68	12.67	7.96	7.49
Merged-chr10-80136982-1	chr10	80136482	80137482	+	631.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_036582, intron 3 of 10)	intron (NR_036582, intron 3 of 10)	405.0	NM_001195268	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	8.01	0.46	5.55	2.7	1.4	3.22	1.06	2.65	2.5
Merged-chr17-69218609-3	chr17	69218088	69219088	+	630.866638	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	intron (NM_001355736, intron 3 of 21)	58618.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	18.31	9.22	27.75	12.82	9.33	13.66	13.73	18.13	14.36
Merged-chr7-99544717-3	chr7	99544245	99545245	+	630.805542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178220, intron 1 of 14)	intron (NM_178220, intron 1 of 14)	-7524.0	NR_029760	723840.0		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	46.34	69.58	49.95	42.51	30.79	56.27	34.85	33.16	20.61
Merged-chr9-107268193-3	chr9	107267708	107268708	+	630.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	21188.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	18.31	12.9	0.0	20.92	17.73	19.29	25.35	16.8	19.98
Merged-chr1-80475171-2	chr1	80474676	80475676	+	630.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040460, intron 2 of 2)	intron (NR_040460, intron 2 of 2)	29244.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	6.86	6.91	1.85	8.1	3.73	7.23	7.39	2.21	3.12
Merged-chr4-58422853-2	chr4	58422361	58423361	+	630.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18237.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	41.76	50.69	50.87	24.96	26.59	12.86	48.58	45.99	23.73
Merged-chr11-73137777-2	chr11	73137268	73138268	+	630.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	526.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	83.52	80.64	52.72	64.1	80.24	81.18	96.11	92.86	64.33
Merged-chr19-29403104-3	chr19	29402585	29403585	+	630.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7834.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	38.33	18.89	32.37	16.87	19.13	40.99	32.74	23.88	26.23
Merged-chr8-34216753-2	chr8	34216265	34217265	+	630.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-50053.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	4.58	1.84	1.85	4.05	8.4	8.04	9.51	10.61	13.74
Merged-chr13-9281436-1	chr13	9280936	9281936	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	4911.0	NM_001081426	208440.0	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	12.01	7.37	7.4	10.8	7.93	8.84	9.51	5.75	9.37
Merged-chr19-36371699-1	chr19	36371199	36372199	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7368.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	3.43	2.3	1.85	2.7	1.87	1.61	3.17	1.77	1.25
Merged-chr10-19291693-2	chr10	19291195	19292195	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64844.0	NM_053008	94222.0	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	2.29	1.84	7.4	6.75	3.73	11.25	5.28	2.21	5.0
Merged-chr2-27425651-1	chr2	27425151	27426151	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	1957.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	22.88	45.16	71.22	39.81	56.91	63.5	57.03	37.58	26.85
Merged-chr6-129284544-1	chr6	129284044	129285044	+	630.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9175.0	NM_001033122	12515.0	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	5.72	5.07	2.77	4.72	8.86	4.82	8.45	6.19	0.0
Merged-chr10-63381767-1	chr10	63381267	63382267	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001253685)	promoter-TSS (NM_001253685)	-676.0	NM_001253685	30045.0	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	11.44	2.3	1.85	2.02	1.87	4.82	5.28	6.19	7.49
Merged-chr8-120704433-2	chr8	120703941	120704941	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31917.0	NM_008320	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	3.43	4.15	7.4	6.75	0.47	0.8	8.45	5.75	6.25
Merged-chr4-134773560-1	chr4	134773060	134774060	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-5556.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	2.86	1.84	5.55	2.02	3.73	2.41	3.17	0.0	8.74
Merged-chr7-126587274-2	chr7	126586719	126587719	+	630.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138310, exon 2 of 4)	exon (NM_138310, exon 2 of 4)	-1402.0	NM_001146311	12752.0	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	25.17	21.2	27.75	18.22	21.46	53.85	21.12	20.78	12.49
Merged-chr8-109737187-1	chr8	109736687	109737687	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080930, intron 1 of 3)	intron (NM_001080930, intron 1 of 3)	552.0	NM_001080930	52335.0	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e	ataxin 1-like	protein-coding	137.86	114.27	72.15	112.68	107.3	133.43	159.48	108.33	66.82
Merged-chr16-93543881-2	chr16	93543374	93544374	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59941.0	NM_145482	224440.0	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	6.86	2.3	1.85	0.67	0.93	3.22	2.11	0.88	3.75
Merged-chr9-22327243-1	chr9	22326743	22327743	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C-int|LTR|ERVK	3447.0	NR_033622	625603.0	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	148.73	194.91	149.84	129.55	146.02	152.72	215.46	262.21	114.29
Merged-chr1-64120700-2	chr1	64120177	64121177	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	712.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	201.93	283.38	210.89	244.25	200.13	218.63	280.95	333.39	158.01
Merged-chr10-80057799-2	chr10	80057291	80058291	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_183426, exon 32 of 32)	exon (NM_183426, exon 32 of 32)	3772.0	NM_001037741	625249.0	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	7.44	5.07	15.72	9.45	6.06	16.08	12.67	11.05	1.25
Merged-chr10-26760537-2	chr10	26760034	26761034	+	630.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11978.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	8.58	12.44	1.85	8.77	5.6	15.27	6.34	3.98	5.0
Merged-chr2-91087605-1	chr2	91087105	91088105	+	630.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9073.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	156.17	166.34	134.12	114.03	84.9	150.31	113.01	119.39	77.44
Merged-chrX_GL456233_random-159726-1	chrX_GL456233_random	159226	160226	+	630.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138758)	promoter-TSS (NM_138758)	79.0	NM_138758	192289.0	Mm.394228	NM_138758	ENSMUSG00000079834	Tmlhe	Bbox2|D430017M14Rik|TMLH	trimethyllysine hydroxylase, epsilon	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	20.07	12.82	0.0
Merged-chr4-155833382-1	chr4	155832882	155833882	+	630.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_025338)	TTS (NM_025338)	2113.0	NM_025338	66077.0	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	8.01	6.91	3.7	5.4	5.6	7.23	17.96	10.17	17.49
Merged-chr1-154003873-1	chr1	154003373	154004373	+	630.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103944.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	11.44	11.52	6.47	20.92	14.93	12.06	12.67	10.17	6.25
Merged-chr8-108983268-2	chr8	108982783	108983783	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	46423.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	60.07	79.25	37.0	35.76	30.79	31.35	84.49	82.69	32.48
Merged-chr9-46009167-2	chr9	46008683	46009683	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357241, intron 1 of 5)	RMER10A|LTR|ERVL	3507.0	NM_001357241	18475.0	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	77.23	49.76	34.22	65.45	25.66	24.92	63.37	65.0	51.21
Merged-chr4-133609908-2	chr4	133609410	133610410	+	630.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 7 of 7)	intron (NM_001017968, intron 7 of 7)	-7742.0	NM_018754	55948.0	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	7.44	4.61	9.25	3.37	2.8	7.23	2.11	1.77	2.5
Merged-chr13-99939488-3	chr13	99938997	99939997	+	630.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LFSINE_Vert|SINE|tRNA	-38814.0	NM_001081493	27220.0	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	2.29	0.46	2.77	2.7	1.87	7.23	7.39	2.21	6.25
Merged-chr11-102318834-3	chr11	102318324	102319324	+	630.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011551, intron 1 of 20)	CpG-2669	272.0	NM_001302955	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	106.4	164.04	116.54	109.3	124.09	149.5	102.45	138.4	122.41
Merged-chr17-14545963-1	chr17	14545463	14546463	+	630.166687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-147021.0	NR_027986	74917.0	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	2.29	1.84	4.62	2.7	3.27	4.82	2.11	5.75	1.25
Merged-chr16-49766518-2	chr16	49766027	49767027	+	630.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	67233.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	4.58	2.3	7.4	4.72	0.93	4.82	7.39	4.42	8.74
Merged-chr7-3601406-3	chr7	3600892	3601892	+	630.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14765.0	NM_175632	232790.0	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	4.58	5.99	0.0	4.72	0.47	3.22	4.22	1.33	1.25
Merged-chr9-14764996-1	chr9	14764496	14765496	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029306, intron 2 of 3)	intron (NM_029306, intron 2 of 3)	6034.0	NM_029306	69325.0	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.0	3.69	0.0	6.75	2.33	1.61	5.28	0.0	0.0
Merged-chr9-121923580-1	chr9	121923080	121924080	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER68B|LTR|ERVL	-7275.0	NM_010012	13124.0	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	8.01	4.61	5.55	7.42	1.4	1.61	3.17	1.77	2.5
Merged-chr13-40860096-1	chr13	40859596	40860596	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_023887, exon 1 of 3)	5' UTR (NM_023887, exon 1 of 3)	328.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	26.31	19.35	13.87	22.94	14.0	21.7	26.4	13.71	20.61
Merged-chr6-72881824-1	chr6	72881324	72882324	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019715, intron 1 of 6)	MTD|LTR|ERVL-MaLR	17468.0	NM_001347231	74287.0	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	37.18	24.88	26.82	17.54	20.06	28.94	32.74	25.65	19.98
Merged-chr5-135023604-1	chr5	135023104	135024104	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016801, exon 1 of 10)	exon (NM_016801, exon 1 of 10)	122.0	NR_133683	20907.0	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	5.15	1.84	1.85	2.7	1.87	1.61	1.06	1.77	2.5
Merged-chr13-30544581-1	chr13	30544081	30545081	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025710, intron 1 of 1)	intron (NM_025710, intron 1 of 1)	735.0	NM_025710	66694.0	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	106.97	132.25	74.0	89.06	107.3	93.24	120.41	106.12	86.18
Merged-chr18-24363727-2	chr18	24363226	24364226	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24360.0	NR_152129	328919.0	Mm.118671	NR_152129		Gm38410	9530053H22	predicted gene, 38410	ncRNA	3.43	5.53	5.55	2.7	3.27	4.82	5.28	3.1	8.74
Merged-chr15-50363118-1	chr15	50362618	50363618	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	525931.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	10.87	14.75	13.87	14.84	11.66	6.43	8.45	11.05	5.0
Merged-chr3-30718787-1	chr3	30718287	30719287	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18944.0	NM_001309233	320352.0	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	1.14	2.3	7.4	2.7	1.87	1.61	3.17	1.77	3.75
Merged-chr5-33630250-1	chr5	33629750	33630750	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178390)	promoter-TSS (NM_178390)	-615.0	NM_001359463	74504.0	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	44.62	48.84	30.52	41.83	32.19	48.23	49.64	46.43	28.73
Merged-chr1-59907921-1	chr1	59907421	59908421	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5085.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	26.31	15.67	11.1	22.94	14.0	25.72	16.9	19.46	19.98
Merged-chr10-17568014-1	chr10	17567514	17568514	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155214.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	9.15	7.37	1.85	4.05	4.2	0.0	4.22	1.77	3.75
Merged-chr14-19969284-1	chr14	19968784	19969784	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285908, intron 1 of 3)	intron (NM_001285908, intron 1 of 3)	7409.0	NM_001285911	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	90.38	127.64	87.87	90.41	88.17	78.77	111.96	106.12	79.32
Merged-chr1-105199520-1	chr1	105199020	105200020	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-156487.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	12.01	2.76	3.7	2.02	2.33	0.0	4.22	0.44	5.62
Merged-chr13-36207128-1	chr13	36206628	36207628	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024274, intron 2 of 6)	intron (NM_024274, intron 2 of 6)	89485.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	12.59	11.98	8.32	3.37	6.53	8.04	7.39	5.31	1.25
Merged-chr1-165700605-2	chr1	165700104	165701104	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038846, intron 1 of 5)	intron (NM_001038846, intron 1 of 5)	7490.0	NM_001038846	226594.0	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	37.18	21.2	28.67	35.09	18.19	36.97	46.47	33.16	28.1
Merged-chr8-46953593-1	chr8	46953093	46954093	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33294.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	6.29	6.91	9.25	7.42	8.4	6.43	15.84	11.94	6.25
Merged-chr15-80029987-1	chr15	80029487	80030487	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-15179.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	43.48	29.95	32.37	42.51	27.52	53.85	58.09	72.52	51.21
Merged-chr11-70458414-1	chr11	70457914	70458914	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151499, intron 3 of 5)	B2_Mm2|SINE|B2	-1019.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	57.78	69.12	60.12	62.75	77.91	65.91	96.11	89.32	86.81
Merged-chr6-91576089-2	chr6	91575594	91576594	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60059.0	NM_026309	67678.0	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	9.15	5.07	7.4	4.05	0.93	0.8	1.06	0.44	1.25
Merged-chr1-39983181-1	chr1	39982681	39983681	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001252201, exon 7 of 31)	exon (NM_001252201, exon 7 of 31)	82268.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	1.72	4.15	1.85	3.37	4.67	1.61	4.22	1.77	9.99
Merged-chr1-152607630-1	chr1	152607130	152608130	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	17587.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	42.9	53.91	76.77	50.6	30.32	36.17	50.7	47.31	25.61
Merged-chr16-38821177-1	chr16	38820677	38821677	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029042, intron 3 of 3)	intron (NM_029042, intron 3 of 3)	7572.0	NM_029042	74663.0	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	16.02	15.67	25.9	10.12	15.39	4.02	31.69	23.43	18.74
Merged-chr11-11836870-1	chr11	11836370	11837370	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016672, intron 8 of 14)	intron (NM_016672, intron 8 of 14)	-27908.0	NM_001163360	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	9.72	2.3	0.0	8.1	3.73	1.61	15.84	8.84	3.12
Merged-chr2-31765641-1	chr2	31765141	31766141	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	B4A|SINE|B4	5468.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	40.62	51.15	35.15	43.18	44.78	73.14	48.58	31.84	30.6
Merged-chr11-52368421-1	chr11	52367921	52368921	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011694, intron 1 of 8)	intron (NM_011694, intron 1 of 8)	7559.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	13.73	9.22	16.65	7.42	8.86	4.82	14.79	14.59	9.99
Merged-chr13-9767593-1	chr13	9767093	9768093	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2272.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	11.44	12.44	11.1	7.42	7.0	6.43	14.79	11.94	16.24
Merged-chr2-145588614-1	chr2	145588114	145589114	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053195, intron 7 of 16)	intron (NM_053195, intron 7 of 16)	-33632.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	1.72	2.76	0.92	2.02	2.33	1.61	2.11	3.54	1.87
Merged-chr15-57889740-1	chr15	57889240	57890240	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	2678.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	17.16	9.68	19.42	19.57	7.0	12.86	15.84	11.94	4.37
Merged-chr5-120457697-1	chr5	120457197	120458197	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133902)	TTS (NM_133902)	15066.0	NM_133902	257635.0	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	7.44	1.38	0.0	4.05	0.0	0.0	1.06	2.65	0.0
Merged-chr7-126607215-1	chr7	126606715	126607715	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12305.0	NM_145636	246779.0	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	37.76	17.05	21.27	7.42	8.86	6.43	10.56	7.52	19.98
Merged-chr3-55354885-2	chr3	55354346	55355346	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	-106882.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	52.06	53.91	36.07	45.88	45.72	48.23	79.21	72.52	54.33
Merged-chr5-129584937-1	chr5	129584437	129585437	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	CpG	768.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	4.0	2.3	4.62	4.05	4.2	1.61	5.28	0.88	0.0
Merged-chr10-128548598-2	chr10	128548059	128549059	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134003)	promoter-TSS (NM_134003)	609.0	NM_018860	67945.0	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	305.48	364.94	189.62	268.54	278.51	193.71	201.73	332.95	171.75
Merged-chr12-81889159-1	chr12	81888659	81889659	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 1 of 35)	L1MB2|LINE|L1	29129.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	6.29	5.99	7.4	4.72	4.2	8.04	2.11	3.54	1.87
Merged-chr11-51820141-1	chr11	51819641	51820641	+	630.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357588, intron 11 of 12)	B3|SINE|B2	37340.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	5.15	11.98	13.87	8.1	6.06	14.47	9.51	4.42	11.87
Merged-chr9-108761769-1	chr9	108761269	108762269	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34225.0	NM_029634	76500.0	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	6.86	3.23	4.62	8.77	4.67	1.61	6.34	4.42	8.74
Merged-chr15-9009717-1	chr15	9009217	9010217	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198024, intron 6 of 13)	(CA)n|Simple_repeat|Simple_repeat	41768.0	NM_198024	223332.0	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	6.29	3.23	1.85	2.7	2.8	8.84	0.0	2.65	9.37
Merged-chr8-34066227-1	chr8	34065727	34066727	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41587.0	NM_001293758	22428.0	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	5.72	4.61	2.77	4.05	1.87	3.22	4.22	0.88	8.74
Merged-chr12-80818567-1	chr12	80818067	80819067	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	MIRb|SINE|MIR	28035.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	31.46	31.79	22.2	31.04	34.52	39.39	21.12	36.26	18.11
Merged-chr11-61497796-2	chr11	61497293	61498293	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-3527.0	NM_001291034	23939.0	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7|b2b2346Clo	mitogen-activated protein kinase 7	protein-coding	14.87	20.27	12.02	12.14	9.8	20.09	10.56	18.13	23.73
Merged-chr11-93812697-1	chr11	93812197	93813197	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73069.0	NM_001013375	217109.0	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	1.72	2.76	11.1	0.67	2.8	0.0	3.17	3.54	3.75
Merged-chrX-38564155-1	chrX	38563655	38564655	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001110142, exon 4 of 23)	exon (NM_001110142, exon 4 of 23)	12041.0	NM_028288	72584.0	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	65.21	70.96	48.1	64.77	56.45	55.46	90.83	83.57	41.84
Merged-chr8-74972544-1	chr8	74972044	74973044	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-21106.0	NM_001316753	70823.0	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.0	1.84	1.85	2.7	0.93	0.0	2.11	2.21	3.75
Merged-chr8-52450928-1	chr8	52450428	52451428	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	94317.0	NR_151738	330767.0	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	6.29	0.0	5.55	4.72	3.27	3.22	5.28	5.31	3.75
Merged-chr5-104044307-1	chr5	104043807	104044807	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2557.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	14.87	17.51	13.87	12.14	10.73	7.23	9.51	11.05	3.75
Merged-chr3-51217183-1	chr3	51216683	51217683	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7264.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.0	8.75	3.7	12.14	4.2	16.08	5.28	7.96	16.86
Merged-chrX-36031464-2	chrX	36030974	36031974	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 37 of 52)	intron (NM_001009947, intron 37 of 52)	-80634.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	10.3	10.14	10.17	5.4	2.8	9.65	4.22	9.29	11.24
Merged-chr7-25599823-2	chr7	25599332	25600332	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16060.0	NM_001039243	632778.0	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	5.15	3.69	3.7	2.02	3.27	3.22	2.11	0.88	6.25
Merged-chr11-107334302-1	chr11	107333802	107334802	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136418.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	75.51	71.88	37.0	119.43	97.03	86.01	57.03	76.94	46.84
Merged-chr13-28757433-1	chr13	28756933	28757933	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-46560.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	3.43	7.37	1.85	10.12	7.0	6.43	2.11	0.44	5.62
Merged-chr8-94172134-1	chr8	94171634	94172634	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008630)	promoter-TSS (NM_008630)	-484.0	NM_008630	17750.0	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	29.75	13.82	5.55	43.86	22.39	4.02	33.8	18.13	4.37
Merged-chr1-89454079-1	chr1	89453579	89454579	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178119)	promoter-TSS (NM_178119)	-732.0	NM_178119	347722.0	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	42.33	29.95	34.22	60.72	59.71	42.6	44.36	45.1	16.86
Merged-chr9-42150264-1	chr9	42149764	42150764	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25967.0	NM_011436	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.29	2.3	2.77	5.4	7.93	1.61	1.06	2.65	1.25
Merged-chr11-61761605-1	chr11	61761105	61762105	+	630.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_144806, intron 1 of 11)	(A)n|Simple_repeat|Simple_repeat	483.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	227.11	179.71	104.52	217.93	139.02	108.51	174.27	117.62	91.18
Merged-chr2-132701594-1	chr2	132701094	132702094	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028637, intron 2 of 2)	intron (NM_028637, intron 2 of 2)	10996.0	NM_028637	73747.0	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	8.01	2.76	0.0	6.07	1.4	4.82	1.06	2.21	2.5
Merged-chr13-24960153-1	chr13	24959653	24960653	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008156, intron 8 of 25)	intron (NM_008156, intron 8 of 25)	17001.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	5.72	2.3	0.0	2.7	1.87	4.82	3.17	1.77	5.62
Merged-chr11-90666309-1	chr11	90665809	90666809	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028011, intron 7 of 15)	intron (NM_028011, intron 7 of 15)	-3310.0	NM_001357547	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	6.86	2.3	1.85	3.37	3.73	2.41	0.0	0.0	1.25
Merged-chr5-90930768-1	chr5	90930268	90931268	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026788)	promoter-TSS (NM_026788)	-428.0	NM_026788	665563.0	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	27.46	12.9	5.55	30.36	21.46	15.27	12.67	10.17	3.12
Merged-chr13-35388595-1	chr13	35388095	35389095	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-176547.0	NR_126478	75543.0	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	1.14	4.15	0.92	4.05	4.2	1.61	2.11	0.0	3.75
Merged-chr14-103387263-1	chr14	103386763	103387763	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40463.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	8.01	4.61	7.4	6.07	7.93	9.65	9.51	3.1	5.62
Merged-chr18-37849648-1	chr18	37849148	37850148	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007858, intron 26 of 26)	intron (NM_007858, intron 26 of 26)	5012.0	NR_105945	102465592.0		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	8.01	3.23	4.62	4.05	6.06	8.84	5.28	4.86	11.24
Merged-chr17-11129312-1	chr17	11128812	11129812	+	630.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 2 of 6)	intron (NM_001317726, intron 2 of 6)	288953.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	3.43	1.84	5.55	5.4	2.33	1.61	2.11	0.88	0.0
Merged-chr13-117034931-2	chr13	117034451	117035451	+	629.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9435.0	NM_001081009	52552.0	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	45.19	75.11	46.25	57.35	41.05	51.44	62.31	53.94	37.47
Merged-chr1-180858938-1	chr1	180858438	180859438	+	629.833313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145943, intron 3 of 6)	ORR1B1|LTR|ERVL-MaLR	7787.0	NM_145943	208768.0	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	8.01	3.69	7.4	6.75	1.87	8.04	6.34	7.96	2.5
Merged-chr4-148074745-1	chr4	148074245	148075245	+	629.833313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	13319.0	NM_009642	11610.0	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	10.87	1.84	4.62	8.1	4.67	18.49	6.34	11.5	7.49
Merged-chr11-75649435-3	chr11	75648946	75649946	+	629.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_008916)	TTS (NM_008916)	-2063.0	NM_008659	17913.0	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	35.47	33.64	31.45	31.04	31.26	47.42	36.97	31.39	36.22
Merged-chr15-99818434-2	chr15	99817951	99818951	+	629.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1698.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	93.24	123.03	61.97	58.7	57.85	34.56	97.17	123.36	74.94
Merged-chr5-122715942-2	chr5	122715447	122716447	+	629.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	8403.0	NM_001310718	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	18.88	13.36	15.72	8.77	10.26	7.23	13.73	8.84	7.49
Merged-chr11-97645054-2	chr11	97644563	97645563	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15347.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	5.15	7.37	9.25	2.02	6.53	0.8	6.34	2.65	3.75
Merged-chr18-60502451-1	chr18	60501951	60502951	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_134133)	promoter-TSS (NM_134133)	-468.0	NM_134133	106878.0	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	2.86	5.07	1.85	4.05	3.27	4.82	2.11	4.86	8.12
Merged-chr15-100449640-2	chr15	100449152	100450152	+	629.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	-19359.0	NM_001357983	68614.0	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	56.06	46.08	59.2	53.3	39.19	57.07	73.93	86.22	44.97
Merged-chr15-8167711-1	chr15	8167211	8168211	+	629.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV16_I-int|LTR|ERVK	-1395.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	1.72	3.69	3.7	9.45	4.2	0.0	10.56	1.77	2.5
Merged-chr4-129504786-2	chr4	129504277	129505277	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8804.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	8.01	15.21	11.1	4.05	5.6	7.23	4.22	4.42	3.75
Merged-chr10-117804728-2	chr10	117804249	117805249	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12044.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	5.72	4.61	3.7	4.05	4.2	15.27	4.22	2.21	9.99
Merged-chr19-10199014-2	chr19	10198500	10199500	+	629.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001271615)	TTS (NM_001271615)	4943.0	NM_001271615	14156.0	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	2.29	7.83	11.1	6.75	2.8	1.61	6.34	1.77	6.25
Merged-chr5-117485614-2	chr5	117485106	117486106	+	629.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	71604.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	40.04	53.91	47.17	31.04	21.93	40.99	15.84	22.11	28.1
Merged-chr17-43012905-3	chr17	43012401	43013401	+	629.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3654.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	14.87	0.92	1.85	1.35	2.8	1.61	4.22	0.88	5.0
Merged-chr5-90652928-2	chr5	90652424	90653424	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12397.0	NM_001310656	73246.0	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	2.86	4.15	5.55	4.05	0.93	3.22	3.17	1.33	7.49
Merged-chr8-84601681-1	chr8	84601181	84602181	+	629.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252060, intron 32 of 47)	intron (NM_001252060, intron 32 of 47)	61171.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	2.29	1.38	3.7	1.35	1.87	4.82	3.17	0.88	5.0
Merged-chr6-114907719-1	chr6	114907219	114908219	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	Lx7|LINE|L1	14102.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	33.18	33.64	36.07	35.09	27.52	45.82	51.75	50.41	27.48
Merged-chr18-82920523-2	chr18	82920032	82921032	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033307)	promoter-TSS (NR_033307)	28.0	NR_033307	75853.0	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	6.29	12.44	5.55	12.82	7.93	6.43	14.79	11.5	7.49
Merged-chr15-73441236-1	chr15	73440736	73441736	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18045.0	NM_001358045	14083.0	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FADK 1|FAK|FRNK|Fadk|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.86	5.53	5.55	3.37	1.87	1.61	2.11	4.86	5.62
Merged-chr17-84235736-1	chr17	84235236	84236236	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-47789.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	2.86	2.3	3.7	2.7	2.33	1.61	4.22	3.54	5.62
Merged-chr5-43916169-2	chr5	43915681	43916681	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47372.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	10.3	7.37	5.55	10.12	5.13	10.45	6.34	10.61	11.87
Merged-chr10-87862207-2	chr10	87861706	87862706	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111274, intron 1 of 4)	intron (NM_001111274, intron 1 of 4)	1095.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	55.49	77.41	62.9	66.12	107.3	75.56	147.87	155.2	66.82
Merged-chr9-50946555-3	chr9	50946053	50947053	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	62520.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	32.04	39.63	31.45	29.69	20.06	24.11	27.46	26.97	16.86
Merged-chr3-102716001-2	chr3	102715495	102716495	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18775.0	NM_027533	70747.0	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	16.02	14.75	12.95	12.14	9.8	18.49	12.67	5.31	9.37
Merged-chr17-70854171-1	chr17	70853671	70854671	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164074)	promoter-TSS (NM_001164074)	-639.0	NM_001164074	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	120.13	76.49	56.42	89.74	68.58	114.14	121.46	74.28	66.2
Merged-chr18-24150458-2	chr18	24149972	24150972	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-28653.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	2.29	0.92	3.7	4.05	0.47	1.61	2.11	3.54	3.75
Merged-chr15-100605184-1	chr15	100604684	100605684	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5200.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	73.79	80.18	55.5	120.1	97.5	73.14	87.66	88.43	38.72
Merged-chr11-50206461-3	chr11	50206009	50207009	+	629.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290769, intron 4 of 7)	intron (NM_001290769, intron 4 of 7)	4311.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	16.02	9.22	13.87	16.87	10.26	14.47	3.17	10.17	8.12
Merged-chr1-64867898-1	chr1	64867398	64868398	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	88926.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.72	8.29	9.25	8.77	9.8	24.92	5.28	8.4	3.75
Merged-chr4-45889715-1	chr4	45889215	45890215	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198660)	promoter-TSS (NM_198660)	-588.0	NM_198660	381522.0	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	14.3	7.83	18.5	20.92	11.2	17.68	10.56	11.94	9.99
Merged-chr4-55622172-1	chr4	55621672	55622672	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89697.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	11.44	11.06	4.62	10.12	8.86	12.06	5.28	3.54	13.12
Merged-chr17-78740515-1	chr17	78740015	78741015	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3955.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	6.29	8.75	8.32	12.82	10.26	14.47	4.22	0.88	3.75
Merged-chr1-43224378-1	chr1	43223878	43224878	+	629.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27617.0	NM_001289533	14200.0	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	2.29	2.3	0.0	2.02	1.87	1.61	7.39	2.65	6.25
Merged-chr7-65519831-1	chr7	65519331	65520331	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62200.0	NR_131060	407810.0	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	1.72	4.15	0.0	0.67	3.27	0.0	1.06	1.33	1.87
Merged-chrX-94150725-1	chrX	94150225	94151225	+	629.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-26958.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	2.86	7.37	8.32	5.4	7.0	6.43	2.11	2.65	1.25
Merged-chr12-52541518-2	chr12	52541018	52542018	+	629.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009706, intron 1 of 5)	intron (NM_009706, intron 1 of 5)	25441.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	9.72	12.9	33.3	18.22	13.53	8.04	34.85	27.41	18.74
Merged-chr1-58773484-2	chr1	58772989	58773989	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-21885.0	NM_009812	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	44.62	39.63	52.72	31.04	24.26	55.46	41.19	31.84	43.09
Merged-chr3-82999237-2	chr3	82998742	82999742	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8482.0	NM_133862	99571.0	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.57	2.76	1.85	4.05	3.27	1.61	2.11	1.33	5.62
Merged-chr16-85050587-2	chr16	85050084	85051084	+	629.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001198825, intron 6 of 15)	intron (NM_001198825, intron 6 of 15)	78373.0	NR_045889	100038614.0	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	2.29	7.83	7.4	4.72	3.73	3.22	9.51	2.21	11.24
Merged-chr14-93235597-1	chr14	93235097	93236097	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271800, intron 3 of 3)	intron (NM_001271800, intron 3 of 3)	655072.0	NM_001271800	211712.0	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	1.72	0.92	5.55	6.75	6.06	9.65	2.11	0.88	5.0
Merged-chr10-128590393-3	chr10	128589884	128590884	+	629.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010153)	promoter-TSS (NM_010153)	-883.0	NM_010153	13867.0	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	9.15	4.61	3.7	10.12	6.06	0.0	4.22	6.63	5.0
Merged-chr1-156043220-1	chr1	156042720	156043720	+	629.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172843, intron 2 of 6)	intron (NM_172843, intron 2 of 6)	2359.0	NM_022329	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	10.87	9.68	3.7	10.8	3.73	4.82	13.73	15.03	19.36
Merged-chr3-69658399-3	chr3	69657902	69658902	+	629.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-59442.0	NM_020026	26879.0	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	42.9	34.1	32.37	35.76	24.26	26.53	40.14	45.54	33.1
Merged-chr1-138165639-1	chr1	138165139	138166139	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	9487.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	20.59	27.65	24.05	21.59	20.99	42.6	29.57	25.2	14.36
Merged-chr4-137844966-1	chr4	137844466	137845466	+	629.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17271.0	NM_199307	230857.0	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	1.14	3.23	0.0	3.37	0.93	0.0	4.22	4.42	3.75
Merged-chr1-173753593-2	chr1	173753081	173754081	+	629.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008329, intron 5 of 8)	intron (NM_008329, intron 5 of 8)	-11772.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	5.72	5.53	4.62	7.42	8.4	12.06	4.22	7.96	23.11
Merged-chr10-96364011-2	chr10	96363506	96364506	+	629.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	137799.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	12.59	8.29	5.55	9.45	3.27	7.23	5.28	7.96	9.99
Merged-chr8-13992681-2	chr8	13992180	13993180	+	629.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131137, intron 1 of 2)	intron (NR_131137, intron 1 of 2)	-6260.0	NR_131136	546036.0	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm45519|Gm845	predicted gene 5907	ncRNA	3.43	1.38	1.85	3.37	4.67	0.0	1.06	1.33	5.0
Merged-chr2-124615088-2	chr2	124614592	124615592	+	629.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	4796.0	NM_172537	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	50.91	56.22	34.22	41.16	46.18	50.64	63.37	47.75	44.97
Merged-chr8-86757475-3	chr8	86756892	86757892	+	629.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11386.0	NM_009172	20437.0	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	siah E3 ubiquitin protein ligase 1A	protein-coding	9.15	8.75	1.85	10.12	3.27	1.61	9.51	5.31	1.25
Merged-chr5-137864185-3	chr5	137863701	137864701	+	629.027771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6152.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	26.89	41.01	44.4	48.58	35.92	38.58	53.87	39.35	26.85
Merged-chr13-80899877-2	chr13	80899384	80900384	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13789.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	3.43	8.29	12.02	4.72	7.93	25.72	4.22	6.63	11.87
Merged-chr19-42004639-1	chr19	42004139	42005139	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	MTC|LTR|ERVL-MaLR	22876.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	98.39	134.55	115.62	97.16	78.84	120.57	86.61	102.58	96.18
Merged-chr1-171238658-1	chr1	171238158	171239158	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153064, intron 5 of 12)	intron (NM_153064, intron 5 of 12)	-4309.0	NM_010185	14127.0	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	14.87	4.61	12.95	4.72	3.73	4.82	7.39	6.19	5.0
Merged-chr9-62844983-1	chr9	62844483	62845483	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 2 of 6)	intron (NM_001033175, intron 2 of 6)	6196.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	10.87	9.68	13.87	5.4	8.86	9.65	9.51	18.57	21.23
Merged-chr9-118716481-1	chr9	118715981	118716981	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	4789.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	12.59	6.91	18.5	16.87	4.67	16.88	10.56	13.27	14.99
Merged-chr14-33146539-1	chr14	33146039	33147039	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 8 of 58)	intron (NM_001146022, intron 8 of 58)	38527.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	7.44	3.23	0.0	4.05	5.6	1.61	3.17	1.77	2.5
Merged-chr5-72984223-1	chr5	72983723	72984723	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22681.0	NM_173403	231290.0	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	2.29	0.92	0.92	3.37	0.47	0.0	1.06	5.75	3.75
Merged-chr1-156458780-1	chr1	156458280	156459280	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	15548.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	37.76	45.62	35.15	28.34	39.65	36.17	28.52	40.68	16.24
Merged-chr2-180704218-1	chr2	180703718	180704718	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291432, intron 1 of 5)	intron (NM_001291432, intron 1 of 5)	-2116.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	33.75	20.74	18.5	27.66	10.73	16.88	17.96	18.13	18.74
Merged-chr15-84983185-1	chr15	84982685	84983685	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033273, intron 1 of 9)	intron (NM_001033273, intron 1 of 9)	4786.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	19.45	31.33	50.87	44.53	41.99	46.62	59.15	46.43	30.6
Merged-chr4-109207675-1	chr4	109207175	109208175	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5403.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	9.72	5.53	4.62	2.02	7.0	4.82	3.17	3.98	7.49
Merged-chr13-29634410-1	chr13	29633910	29634910	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131896, intron 8 of 16)	L1MB3|LINE|L1	221263.0	NR_131896	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	3.43	1.38	5.55	4.05	2.33	3.22	8.45	5.31	2.5
Merged-chr17-37028350-1	chr17	37027850	37028850	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4952.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	71.51	66.81	59.2	44.53	39.65	61.09	63.37	71.19	29.98
Merged-chr10-84110786-1	chr10	84110286	84111286	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10089.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	11.44	9.68	10.17	12.14	11.66	11.25	16.9	6.63	8.74
Merged-chr12-21508680-1	chr12	21508180	21509180	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-91244.0	NM_011739	22630.0	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta	protein-coding	6.29	5.07	9.25	3.37	3.27	6.43	3.17	1.77	6.87
Merged-chr10-13823305-1	chr10	13822805	13823805	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 2 of 5)	intron (NM_025446, intron 2 of 5)	45652.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	48.05	77.41	41.62	52.63	56.91	56.27	48.58	53.5	23.11
Merged-chr14-47626995-1	chr14	47626495	47627495	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-22316.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	2.29	2.76	11.1	2.7	2.33	0.8	2.11	0.44	1.25
Merged-chr12-111149711-1	chr12	111149211	111150211	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16659.0	NM_001286122	22031.0	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	5.72	2.3	5.55	6.75	7.46	3.22	5.28	7.96	7.49
Merged-chr8-71741943-1	chr8	71741443	71742443	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16262.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	5.72	0.92	5.55	4.05	1.87	7.23	1.06	0.0	7.49
Merged-chr2-14277742-1	chr2	14277242	14278242	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 10 of 29)	RLTR51A_Mm|LTR|ERVK?	16739.0	NR_030609	100124488.0		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	12.01	6.91	21.27	11.47	4.2	16.88	8.45	6.19	9.99
Merged-chr18-36509486-3	chr18	36508990	36509990	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	6315.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	14.3	6.45	3.7	10.8	3.27	6.43	2.11	9.29	2.5
Merged-chr5-127615072-1	chr5	127614572	127615572	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	2320.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	60.64	98.15	86.95	88.39	90.97	94.85	95.06	114.08	96.18
Merged-chr1-180195407-1	chr1	180194907	180195907	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	613.0	NM_023341	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	28.6	27.65	26.82	32.39	20.06	12.06	26.4	19.01	10.62
Merged-chr14-120434359-1	chr14	120433859	120434859	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44102.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	7.44	3.69	3.7	8.77	9.33	4.02	1.06	3.98	10.62
Merged-chr8-70621284-1	chr8	70620784	70621784	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_153074)	TTS (NM_153074)	4440.0	NM_153074	211228.0	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	21.17	12.44	15.72	29.01	20.06	21.7	29.57	15.48	16.24
Merged-chr6-85433676-2	chr6	85433144	85434144	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144918, intron 1 of 12)	intron (NM_144918, intron 1 of 12)	1668.0	NM_144918	232187.0	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	71.51	89.85	59.2	61.4	52.25	102.08	120.41	145.92	60.58
Merged-chr6-97805963-1	chr6	97805463	97806463	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1095.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	22.88	55.75	39.77	31.71	20.99	37.78	44.36	53.06	53.71
Merged-chr9-110535302-1	chr9	110534802	110535802	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081340, intron 1 of 20)	intron (NM_001081340, intron 1 of 20)	2705.0	NM_001081340	235626.0	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	7.44	15.67	8.32	10.8	9.33	14.47	22.18	11.5	11.87
Merged-chr7-75910179-1	chr7	75909679	75910679	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61841.0	NM_029652	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.29	2.3	0.0	2.7	0.0	3.22	5.28	3.54	5.62
Merged-chr13-55063458-1	chr13	55062958	55063958	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121592, intron 6 of 13)	intron (NR_121592, intron 6 of 13)	30948.0	NM_001359757	20184.0	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	17.73	6.45	9.25	11.47	7.93	9.65	13.73	10.17	5.62
Merged-chr9-44882788-1	chr9	44882288	44883288	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1514.0	NM_001081049	214162.0	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	8.58	4.61	0.92	4.72	2.33	1.61	5.28	3.54	1.25
Merged-chr1-182991106-1	chr1	182990606	182991606	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36318.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	1.72	3.23	3.7	1.35	1.4	1.61	3.17	3.1	4.37
Merged-chr15-83433479-2	chr15	83432980	83433980	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011862)	promoter-TSS (NM_011862)	-630.0	NM_001159510	23970.0	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	33.18	22.58	12.95	23.62	18.19	22.51	17.96	19.46	26.23
Merged-chr6-13599949-1	chr6	13599449	13600449	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155435, intron 1 of 3)	intron (NR_155435, intron 1 of 3)	8149.0	NR_155435	101118.0	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	36.61	24.88	10.17	24.29	15.39	24.11	28.52	25.65	15.61
Merged-chr4-8648854-1	chr4	8648354	8649354	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41552.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	9.15	16.13	4.62	8.77	8.4	12.06	14.79	5.75	9.37
Merged-chr2-148533904-2	chr2	148533405	148534405	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90370.0	NM_010740	17064.0	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	5.15	10.14	5.55	5.4	3.73	4.02	6.34	3.1	2.5
Merged-chr3-87372254-1	chr3	87371754	87372754	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4133.0	NM_001310545	229499.0	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	12.59	14.75	15.72	10.8	9.33	17.68	15.84	21.22	23.73
Merged-chr6-116135806-1	chr6	116135306	116136306	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 2 of 5)	intron (NM_177412, intron 2 of 5)	57568.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	84.09	100.45	64.75	95.81	62.98	65.11	85.55	91.97	61.2
Merged-chr13-6029894-1	chr13	6029394	6030394	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	168405.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	6.29	5.99	5.55	6.75	6.06	11.25	17.96	3.54	3.12
Merged-chr5-98186329-1	chr5	98185829	98186829	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	-345.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	2.29	1.38	4.62	2.7	0.0	0.0	1.06	0.88	1.87
Merged-chr1-164059517-1	chr1	164059017	164060017	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-2559.0	NM_001164059	20343.0	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	2.86	3.23	0.92	4.05	2.33	0.0	4.22	5.31	6.25
Merged-chr11-51356579-1	chr11	51356079	51357079	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	66659.0	NM_153393	237759.0	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	2.86	6.45	7.4	9.45	2.8	1.61	3.17	3.54	9.99
Merged-chr13-115089429-1	chr13	115088929	115089929	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134058, exon 1 of 2)	exon (NM_134058, exon 1 of 2)	729.0	NM_134058	105083.0	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota mRNA surveillance and ribosome rescue factor	protein-coding	72.08	48.84	19.42	82.99	83.04	22.51	85.55	63.23	16.24
Merged-chr6-145800452-1	chr6	145799952	145800952	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-7931.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	12.59	10.14	5.55	15.52	8.86	8.84	7.39	8.4	1.25
Merged-chr3-82759105-1	chr3	82758605	82759605	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117378.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	2.29	3.23	3.7	3.37	5.6	3.22	2.11	4.86	1.25
Merged-chr17-66449812-1	chr17	66449312	66450312	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001114098)	promoter-TSS (NM_001114098)	-62.0	NM_001114098	68617.0	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	6.86	1.84	0.0	4.72	1.4	4.82	2.11	0.88	3.12
Merged-chr2-173227724-1	chr2	173227224	173228224	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022995, exon 4 of 4)	3' UTR (NM_022995, exon 4 of 4)	-8802.0	NM_001139519	58203.0	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	1.14	1.84	1.85	2.02	4.2	4.82	1.06	3.54	3.75
Merged-chr4-127168817-1	chr4	127168317	127169317	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-387.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	4.58	0.92	9.25	3.37	0.93	3.22	3.17	0.44	4.37
Merged-chr2-35480260-2	chr2	35479767	35480767	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18818.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	15.45	8.29	8.32	8.77	10.73	11.25	10.56	7.52	3.12
Merged-chr19-46452646-2	chr19	46452147	46453147	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025391, intron 6 of 11)	intron (NM_001025391, intron 6 of 11)	-49001.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	4.58	1.84	3.7	3.37	1.87	3.22	1.06	3.1	3.75
Merged-chr1-178492685-1	chr1	178492185	178493185	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36440.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	12.01	4.61	16.65	4.72	10.73	9.65	2.11	3.54	5.0
Merged-chr1-53888151-1	chr1	53887651	53888651	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 15 of 28)	intron (NM_001001883, intron 15 of 28)	38727.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	8.58	8.75	2.77	12.14	11.66	16.88	6.34	3.98	6.25
Merged-chr10-93549271-1	chr10	93548771	93549771	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175488, intron 3 of 15)	intron (NM_175488, intron 3 of 15)	-5610.0	NM_001359749	237465.0	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	2.86	3.23	1.85	0.67	5.13	0.0	1.06	3.1	0.0
Merged-chr10-80179583-1	chr10	80179083	80180083	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_007909, exon 1 of 4)	5' UTR (NM_007909, exon 1 of 4)	101.0	NM_007909	13637.0	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	9.72	1.38	6.47	4.05	2.8	5.63	7.39	4.86	2.5
Merged-chr3-59204341-1	chr3	59203841	59204841	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	6541.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	31.46	27.19	37.0	34.41	14.0	29.74	23.24	22.99	26.85
Merged-chr18-26908395-1	chr18	26907895	26908895	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1154238.0	NM_001362334	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.86	5.07	3.7	5.4	4.67	8.04	5.28	4.42	1.25
Merged-chr6-128662393-1	chr6	128661893	128662893	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	8.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	2.86	8.29	7.4	6.75	7.93	10.45	3.17	3.54	8.74
Merged-chr15-99055873-1	chr15	99055373	99056373	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163589, intron 1 of 8)	intron (NM_001163589, intron 1 of 8)	699.0	NM_001163589	19132.0	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	4.0	2.76	2.77	5.4	1.87	6.43	2.11	0.88	5.0
Merged-chr14-30256000-1	chr14	30255500	30256500	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	97486.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	8.01	5.99	5.55	3.37	6.06	9.65	8.45	4.42	3.75
Merged-chr8-105554322-1	chr8	105553822	105554822	+	629.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	11742.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	9.15	4.61	3.7	5.4	5.6	3.22	4.22	1.33	1.25
Merged-chr4-138013924-1	chr4	138013424	138014424	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	16099.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	45.19	32.25	31.45	38.46	24.72	38.58	14.79	9.73	8.74
Merged-chr1-53777463-1	chr1	53776963	53777963	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	intron (NM_133810, intron 1 of 7)	7752.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	40.04	54.37	74.0	47.9	43.85	55.46	50.7	57.48	54.96
Merged-chr11-119084106-2	chr11	119083631	119084631	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007625, intron 3 of 4)	intron (NM_007625, intron 3 of 4)	2106.0	NM_007625	12418.0	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	36.04	12.9	9.25	30.36	18.19	29.74	19.01	15.48	6.25
Merged-chr5-43842109-1	chr5	43841609	43842609	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009763, exon 9 of 9)	3' UTR (NM_009763, exon 9 of 9)	23216.0	NM_009763	12182.0	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	91.53	97.23	88.8	95.14	60.18	102.88	120.41	115.85	80.56
Merged-chr1-184734475-3	chr1	184733939	184734939	+	629.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1946.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	56.63	39.63	27.75	63.42	32.66	44.21	44.36	38.47	23.11
Merged-chr8-70942205-1	chr8	70941705	70942705	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	10890.0	NM_001357655	665828.0	Mm.482151	NM_001357655	ENSMUSG00000074252	Gm10654	EG665828	predicted gene 10654	protein-coding	4.0	11.98	20.35	4.72	4.2	7.23	8.45	5.75	3.75
Merged-chr15-80792738-1	chr15	80792238	80793238	+	629.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144812, intron 4 of 24)	Lx8|LINE|L1	-5872.0	NM_177124	213988.0	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	1.14	3.23	3.7	6.07	3.73	6.43	3.17	1.33	6.87
Merged-chr16-55818259-5	chr16	55817823	55818823	+	628.799988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001159394, exon 5 of 12)	exon (NM_001159394, exon 5 of 12)	3815.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	18.88	7.37	11.1	14.84	4.67	4.82	9.51	6.19	14.36
Merged-chr4-103340459-3	chr4	103339969	103340969	+	628.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025909, intron 7 of 8)	intron (NM_025909, intron 7 of 8)	26623.0	NM_025909	67013.0	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	30.32	23.04	47.17	24.29	25.66	30.54	33.8	42.89	14.36
Merged-chrX-37113473-2	chrX	37112958	37113958	+	628.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3136.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	4.0	3.69	1.85	0.67	1.4	0.0	1.06	1.33	2.5
Merged-chr6-147116793-1	chr6	147116293	147117293	+	628.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	25718.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	5.15	0.92	1.85	2.7	6.53	0.0	3.17	4.42	6.87
Merged-chr5-151108734-1	chr5	151108234	151109234	+	628.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153382, intron 1 of 13)	intron (NR_153382, intron 1 of 13)	81459.0	NM_001163493	243362.0	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	2.29	4.61	5.55	5.4	6.53	4.82	5.28	6.19	11.87
Merged-chr2-172392377-1	chr2	172391877	172392877	+	628.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1417.0	NM_001080820	320664.0	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	14.3	16.13	12.95	26.31	19.59	25.72	7.39	7.96	9.99
Merged-chr3-88620690-2	chr3	88620165	88621165	+	628.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008487)	promoter-TSS (NM_008487)	-441.0	NM_008487	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	93.82	85.25	131.34	109.98	58.31	97.26	87.66	80.92	54.33
Merged-chr1-151585848-2	chr1	151585352	151586352	+	628.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	14479.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	40.62	29.49	16.65	103.91	53.65	43.4	63.37	68.98	48.71
Merged-chr11-61866508-2	chr11	61866014	61867014	+	628.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11422.0	NM_013881	29869.0	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	37.76	40.09	20.35	37.11	29.86	24.11	30.63	28.74	26.23
Merged-chr8-48009223-1	chr8	48008723	48009723	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-18672.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.58	1.38	1.85	4.05	4.2	2.41	3.17	1.33	7.49
Merged-chr4-111687183-2	chr4	111686681	111687681	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32829.0	NM_026470	67946.0	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	1.72	0.92	0.0	3.37	3.27	5.63	7.39	0.44	1.25
Merged-chr13-63240385-2	chr13	63239879	63240879	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289926, intron 13 of 15)	intron (NM_001289926, intron 13 of 15)	350.0	NR_110521	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	63.5	44.24	51.8	87.04	99.37	59.48	57.03	49.52	22.48
Merged-chr5-120711640-1	chr5	120711140	120712140	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008052)	promoter-TSS (NM_008052)	29.0	NM_008052	14357.0	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	7.44	0.46	3.7	1.35	4.2	4.02	4.22	1.77	3.75
Merged-chr4-107080418-2	chr4	107079938	107080938	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346552, intron 5 of 6)	intron (NM_001346552, intron 5 of 6)	13450.0	NM_175471	230582.0	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	14.3	6.91	19.42	21.59	7.93	12.06	19.01	8.4	9.99
Merged-chr19-12433850-2	chr19	12433334	12434334	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	5929.0	NM_019540	56093.0	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	118.42	128.1	62.9	108.63	94.23	99.67	66.54	68.54	64.95
Merged-chr6-86586192-2	chr6	86585703	86586703	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41971.0	NM_026414	67855.0	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	97.25	56.22	39.77	101.88	69.04	42.6	100.34	73.4	43.09
Merged-chr11-77028782-2	chr11	77028284	77029284	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010484, intron 13 of 13)	intron (NM_010484, intron 13 of 13)	30187.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	6.86	4.61	1.85	16.19	14.0	14.47	10.56	4.42	2.5
Merged-chr9-54547712-2	chr9	54547231	54548231	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019686, intron 4 of 5)	intron (NM_019686, intron 4 of 5)	8747.0	NM_173778	244885.0	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	3.43	1.38	3.7	2.7	0.93	3.22	3.17	0.88	3.75
Merged-chr2-30691557-1	chr2	30691057	30692057	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13546.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	20.59	23.96	16.65	26.99	20.06	29.74	8.45	7.52	12.49
Merged-chr15-98153850-3	chr15	98153350	98154350	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170711, intron 1 of 3)	intron (NM_001170711, intron 1 of 3)	-8148.0	NM_001170710	78541.0	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	7.44	10.14	1.85	6.75	7.46	9.65	3.17	0.88	8.74
Merged-chr2-151995004-2	chr2	151994496	151995496	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1515.0	NM_027172	69698.0	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	5.72	4.15	4.62	5.4	2.8	2.41	6.34	0.44	2.5
Merged-chr17-17449563-1	chr17	17449063	17450063	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	intron (NM_025681, intron 4 of 5)	46877.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	146.45	167.26	86.02	124.15	146.95	101.28	118.29	112.75	51.21
Merged-chr17-3077894-1	chr17	3077394	3078394	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 4 of 7)	intron (NR_003519, intron 4 of 7)	6289.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	8.58	10.6	15.72	23.62	11.66	15.27	0.0	0.44	16.86
Merged-chr13-101654996-1	chr13	101654496	101655496	+	628.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37634.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	11.44	10.14	2.77	7.42	6.06	4.82	5.28	7.07	2.5
Merged-chr16-5406937-1	chr16	5406437	5407437	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-150981.0	NM_027446	70511.0	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	2.86	2.3	5.55	5.4	0.93	4.82	2.11	1.33	1.25
Merged-chr15-78583554-2	chr15	78583056	78584056	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA9|LINE|L1	-1967.0	NR_155437	102640742.0	Mm.253544	NR_155437	ENSMUSG00000116097	Gm36738	-	predicted gene, 36738	ncRNA	16.59	10.14	5.55	10.8	8.4	22.51	11.62	2.65	1.25
Merged-chr6-15748057-1	chr6	15747557	15748557	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 3 of 4)	(TG)n|Simple_repeat|Simple_repeat	27396.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	16.59	8.75	14.8	9.45	7.46	6.43	9.51	3.98	9.37
Merged-chr12-69403029-1	chr12	69402529	69403529	+	628.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MERV1_LTR|LTR|ERV1	30879.0	NM_007481	11845.0	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	12.59	5.99	1.85	4.72	5.6	8.04	9.51	2.65	5.0
Merged-chr18-9487582-1	chr18	9487082	9488082	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37428.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	9.72	8.75	3.7	16.87	15.39	4.82	24.29	14.15	1.25
Merged-chr8-39695527-2	chr8	39695043	39696043	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-52865.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	2.86	3.69	1.85	1.35	3.27	1.61	2.11	2.21	5.62
Merged-chrX-99658259-1	chrX	99657759	99658759	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-162810.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	1.14	2.3	1.85	0.0	0.93	1.61	1.06	1.33	0.0
Merged-chr8-104111919-1	chr8	104111419	104112419	+	628.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009868, intron 1 of 11)	intron (NM_009868, intron 1 of 11)	-6046.0	NR_131138	546096.0	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	Gm45664	predicted gene, 29682	ncRNA	106.97	141.92	99.89	101.88	119.89	168.8	226.02	238.77	134.9
Merged-chr3-108886302-2	chr3	108885812	108886812	+	628.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165965, intron 2 of 11)	intron (NM_001165965, intron 2 of 11)	3696.0	NM_177091	320181.0	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	12.01	9.22	14.8	24.29	14.0	18.49	34.85	19.9	32.48
Merged-chr3-138198329-3	chr3	138197807	138198807	+	628.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11594.0	NM_001163386	67741.0	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0.57	4.61	3.7	9.45	2.33	0.0	4.22	3.1	3.75
Merged-chr18-35094136-3	chr18	35093637	35094637	+	628.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24775.0	NM_009818	12385.0	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	13.73	13.36	15.72	10.8	12.6	12.06	17.96	5.31	12.49
Merged-chr15-78330129-2	chr15	78329603	78330603	+	628.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	B4A|SINE|B4	4113.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	12.59	14.75	9.25	8.1	10.73	12.06	16.9	7.07	13.12
Merged-chr10-24103483-3	chr10	24102971	24103971	+	628.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1520.0	NM_001010840	494546.0	Mm.379739	NM_001010840	ENSMUSG00000100004	Taar8c	taR-8c	trace amine-associated receptor 8C	protein-coding	5.15	5.99	1.85	1.35	3.27	3.22	6.34	2.65	1.25
Merged-chr11-60912579-2	chr11	60912096	60913096	+	628.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025294, intron 1 of 2)	intron (NM_025294, intron 1 of 2)	1196.0	NM_025294	24083.0	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	9.15	5.99	9.25	34.41	30.32	19.29	26.4	24.76	7.49
Merged-chr5-32611088-2	chr5	32610586	32611586	+	628.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001205133)	promoter-TSS (NM_001205133)	-85.0	NM_001205133	22612.0	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	19.45	5.07	1.85	13.49	6.53	3.22	12.67	5.75	3.75
Merged-chr11-106122150-3	chr11	106121655	106122655	+	628.211121	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011947, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	37253.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	74.37	87.09	81.4	63.42	58.31	88.42	78.16	81.8	86.81
Merged-chr6-145304688-1	chr6	145304188	145305188	+	628.200012	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	54136.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	104.11	121.19	66.6	124.82	106.36	110.92	265.1	305.54	156.76
Merged-chr17-70683997-2	chr17	70683519	70684519	+	628.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	122272.0	NM_001128181	224997.0	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	DLG associated protein 1	protein-coding	1.72	1.84	0.0	4.05	1.4	0.0	1.06	0.44	1.25
Merged-chr16-31124480-2	chr16	31123970	31124970	+	628.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 10 of 22)	intron (NM_030138, intron 10 of 22)	-43038.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	35.47	23.04	15.72	29.69	12.13	19.29	9.51	4.86	6.25
Merged-chr10-6418373-2	chr10	6417846	6418846	+	628.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-340247.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	8.58	9.68	19.42	15.52	5.13	16.88	2.11	0.88	0.0
Merged-chr6-54781137-2	chr6	54780640	54781640	+	628.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-35776.0	NM_199143	387524.0	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	30.32	37.78	49.02	30.36	24.26	37.78	35.91	47.75	33.1
Merged-chr15-66804696-1	chr15	66804196	66805196	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029841, intron 1 of 7)	intron (NM_001029841, intron 1 of 7)	27133.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	14.3	11.06	8.32	13.49	9.33	22.51	19.01	9.29	16.86
Merged-chr10-7780211-1	chr10	7779711	7780711	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145418, intron 1 of 7)	(CA)n|Simple_repeat|Simple_repeat	706.0	NM_145418	215751.0	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	10.3	8.29	2.77	24.29	13.53	24.11	17.96	19.01	11.87
Merged-chr1-183398075-1	chr1	183397575	183398575	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277957, intron 4 of 10)	intron (NM_001277957, intron 4 of 10)	9090.0	NM_001277958	21339.0	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	6.86	11.06	5.55	17.54	4.67	3.22	11.62	10.61	7.49
Merged-chr1-130373911-1	chr1	130373411	130374411	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48913.0	NR_151525	102640368.0		NR_151525	ENSMUSG00000087691	Gm15674	-	predicted gene 15674	ncRNA	2.29	3.23	3.7	4.05	0.0	3.22	3.17	7.52	4.37
Merged-chr4-101070965-1	chr4	101070465	101071465	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183024, intron 1 of 11)	intron (NM_183024, intron 1 of 11)	1927.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	9.72	21.66	19.42	10.12	15.39	13.66	15.84	20.34	13.74
Merged-chrX-35956435-1	chrX	35955935	35956935	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 6 of 52)	intron (NM_001009947, intron 6 of 52)	67603.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	1.14	4.61	3.7	2.02	0.93	1.61	2.11	0.44	0.0
Merged-chr4-139093040-1	chr4	139092540	139093540	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008675)	promoter-TSS (NM_008675)	-70.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	2.29	1.84	0.92	8.1	4.2	4.82	8.45	0.0	3.75
Merged-chr2-45275049-1	chr2	45274549	45275549	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-157607.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	43.48	61.28	62.9	26.31	41.52	40.19	35.91	47.31	44.97
Merged-chr6-43425206-1	chr6	43424706	43425706	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311111, intron 6 of 7)	intron (NM_001311111, intron 6 of 7)	-17223.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	2.29	2.3	1.85	0.67	0.93	1.61	4.22	3.1	3.75
Merged-chr8-46070317-2	chr8	46069818	46070818	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	B1_Mus2|SINE|Alu	53828.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	8.58	4.61	14.8	10.8	5.13	4.82	11.62	4.42	7.49
Merged-chr4-75063573-1	chr4	75063073	75064073	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	214719.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	4.58	3.69	1.85	3.37	4.67	2.41	4.22	1.77	0.0
Merged-chr11-115513733-1	chr11	115513233	115514233	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	CpG	660.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	142.44	111.05	116.54	119.43	78.84	130.21	157.37	133.98	103.05
Merged-chr4-126156238-1	chr4	126155738	126156738	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025856, intron 6 of 11)	intron (NM_025856, intron 6 of 11)	6427.0	NM_025856	66938.0	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	37.76	23.96	60.12	36.43	22.39	40.99	50.7	37.14	39.35
Merged-chr4-54794065-1	chr4	54793565	54794565	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-153880.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	6.86	4.15	7.4	6.75	4.2	9.65	1.06	3.98	4.37
Merged-chr3-138488755-1	chr3	138488255	138489255	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175224, intron 1 of 10)	intron (NM_175224, intron 1 of 10)	627.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	33.75	30.41	15.72	33.06	26.59	26.53	36.97	29.18	16.86
Merged-chr7-144583875-2	chr7	144583389	144584389	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-1453.0	NM_010175	14082.0	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	6.29	2.76	3.7	5.4	3.73	4.02	8.45	0.88	11.24
Merged-chr8-27192414-1	chr8	27191914	27192914	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10133.0	NM_029674	76615.0	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	9.72	1.84	1.85	6.75	0.93	0.8	1.06	1.33	2.5
Merged-chr18-84787946-2	chr18	84787438	84788438	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	43871.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	8.58	7.37	4.62	6.07	6.06	12.86	5.28	4.86	2.5
Merged-chr2-103719096-1	chr2	103718596	103719596	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178890)	TTS (NM_178890)	42174.0	NM_153126	98956.0	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	4.58	4.61	2.77	2.02	1.4	0.0	3.17	2.21	5.0
Merged-chr7-53496050-1	chr7	53495550	53496550	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	395839.0	NR_105746	102466619.0		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.43	5.07	2.77	0.0	3.73	4.02	2.11	7.52	5.62
Merged-chr16-91404796-1	chr16	91404296	91405296	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_010509, exon 9 of 9)	3' UTR (NM_010509, exon 9 of 9)	-1439.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	89.24	90.77	64.75	77.59	49.45	77.97	79.21	70.75	41.84
Merged-chr9-70385315-1	chr9	70384815	70385815	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	20438.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	6.86	7.83	3.7	9.45	3.73	4.82	1.06	1.77	5.0
Merged-chr4-134551879-1	chr4	134551379	134552379	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029100, intron 1 of 11)	intron (NM_029100, intron 1 of 11)	287.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	25.17	26.73	23.12	45.21	25.19	39.39	22.18	19.46	8.74
Merged-chrX-144236476-1	chrX	144235976	144236976	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61314.0	NR_030448	751551.0		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	6.29	0.46	0.0	4.72	1.87	0.8	2.11	1.33	1.25
Merged-chr12-99326212-1	chr12	99325712	99326712	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	123862.0	NM_183186	71375.0	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	3.43	3.69	9.25	6.75	6.06	8.04	8.45	5.31	7.49
Merged-chr12-38864513-1	chr12	38864013	38865013	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347379, intron 11 of 11)	(CA)n|Simple_repeat|Simple_repeat	80802.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	50.34	39.63	31.45	68.82	30.32	74.75	54.92	30.07	46.22
Merged-chr17-56583243-1	chr17	56582743	56583743	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029979, intron 1 of 20)	intron (NM_001029979, intron 1 of 20)	1342.0	NM_001029979	224902.0	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	54.35	63.13	33.3	71.52	57.38	47.42	71.82	61.02	18.74
Merged-chr15-88760710-1	chr15	88760210	88761210	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181412, intron 2 of 2)	B2_Mm1a|SINE|B2	8999.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	5.72	4.61	0.0	6.07	2.8	3.22	2.11	0.44	3.12
Merged-chr8-71433120-1	chr8	71432620	71433620	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTAGGG)n|Simple_repeat|Simple_repeat	27108.0	NM_172756	234396.0	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	8.01	0.92	0.0	0.67	3.73	0.0	3.17	2.21	2.5
Merged-chr5-72250386-1	chr5	72249886	72250886	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003966, intron 9 of 22)	intron (NR_003966, intron 9 of 22)	47043.0	NM_153389	231287.0	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	4.58	4.61	12.95	12.82	11.66	16.08	7.39	6.63	7.49
Merged-chr5-103693406-1	chr5	103692906	103693906	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37674.0	NM_001163550	74218.0	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	8.01	6.91	17.57	16.87	6.06	4.82	8.45	7.52	5.0
Merged-chr1-80823333-1	chr1	80822833	80823833	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64780.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	7.44	2.76	1.85	4.05	7.0	5.63	4.22	4.42	2.5
Merged-chr15-78328219-1	chr15	78327719	78328719	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358854, intron 2 of 14)	intron (NM_001358854, intron 2 of 14)	2229.0	NM_007780	12983.0	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	24.6	35.02	38.85	29.69	23.79	27.33	34.85	34.05	14.99
Merged-chr12-109530108-1	chr12	109529608	109530608	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10888.0	NR_027652	17263.0	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	5.15	2.3	1.85	2.7	1.87	1.61	8.45	6.63	3.12
Merged-chr15-64058433-1	chr15	64057933	64058933	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360037, intron 1 of 11)	intron (NM_001360037, intron 1 of 11)	1331.0	NM_001360038	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	41.76	57.6	64.75	45.21	29.86	63.5	68.65	53.94	42.47
Merged-chr13-52650761-1	chr13	52650261	52651261	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	53879.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	9.15	3.23	11.1	2.02	5.6	12.86	1.06	2.21	5.0
Merged-chr16-24711090-1	chr16	24710590	24711590	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	RMER6C|LTR|ERVK	-10765.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.29	3.23	11.1	3.37	6.06	9.65	8.45	6.19	4.37
Merged-chr8-34849048-1	chr8	34848548	34849548	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 18 of 26)	intron (NM_175091, intron 18 of 26)	41438.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	6.86	5.99	9.25	3.37	5.6	9.65	0.0	3.54	3.75
Merged-chr17-27125381-1	chr17	27124881	27125881	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026063, intron 2 of 3)	intron (NM_026063, intron 2 of 3)	8510.0	NM_026063	67267.0	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	3.43	4.15	3.7	6.07	1.87	4.82	3.17	1.77	1.87
Merged-chr11-77214462-1	chr11	77213962	77214962	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1963.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	9.15	9.68	3.7	10.8	5.6	10.45	6.34	8.4	16.24
Merged-chr15-55500228-1	chr15	55499728	55500728	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181277, intron 44 of 47)	intron (NM_181277, intron 44 of 47)	57084.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	2.29	0.92	3.7	3.37	2.8	8.04	0.0	3.54	1.25
Merged-chr15-98799627-1	chr15	98799127	98800127	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8298.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	4.58	1.38	0.0	2.7	1.4	1.61	0.0	1.33	0.62
Merged-chr8-111731509-1	chr8	111731009	111732009	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009954, intron 1 of 6)	intron (NM_009954, intron 1 of 6)	627.0	NM_001198839	12927.0	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	8.01	4.61	4.62	8.77	8.4	0.8	3.17	1.33	1.25
Merged-chr14-77905997-2	chr14	77905509	77906509	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	intron (NM_029495, intron 1 of 11)	1770.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	41.19	39.63	14.8	32.39	21.93	17.68	84.49	84.9	63.08
Merged-chr16-91376325-1	chr16	91375825	91376825	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	3542.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	88.1	124.87	70.3	107.95	87.24	126.19	98.23	98.6	43.72
Merged-chr15-59079134-1	chr15	59078634	59079634	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	2892.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	12.59	10.6	1.85	27.66	19.59	33.76	12.67	8.84	7.49
Merged-chr4-128613401-1	chr4	128612901	128613901	+	628.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3303.0	NM_177758	269585.0	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	14.3	15.67	9.25	7.42	4.67	8.04	12.67	11.05	12.49
Merged-chr5-117577167-1	chr5	117576667	117577667	+	628.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	163165.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.43	0.92	5.55	0.0	0.47	1.61	2.11	2.65	4.37
Merged-chr14-47396456-1	chr14	47395956	47396956	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144553, intron 13 of 18)	intron (NM_144553, intron 13 of 18)	21951.0	NM_144553	218977.0	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	DLG associated protein 5	protein-coding	10.3	12.9	8.32	13.49	9.8	11.25	4.22	2.21	4.37
Merged-chr10-5841582-1	chr10	5841082	5842082	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161822, intron 4 of 5)	intron (NM_001161822, intron 4 of 5)	-17639.0	NM_175374	108853.0	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.57	0.92	2.77	0.67	0.47	3.22	2.11	1.77	0.62
Merged-chr10-42842498-1	chr10	42841998	42842998	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18014.0	NM_172938	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	1.14	1.38	1.85	8.1	1.87	1.61	7.39	0.88	5.0
Merged-chr4-9250853-1	chr4	9250353	9251353	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18440.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	2.86	7.37	3.7	1.35	3.27	6.43	1.06	1.33	4.37
Merged-chr6-127107590-1	chr6	127107090	127108090	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177003, intron 1 of 5)	intron (NM_177003, intron 1 of 5)	1962.0	NM_177003	319801.0	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	1.14	2.76	3.7	5.4	4.67	5.63	3.17	2.65	5.0
Merged-chr12-21288053-1	chr12	21287553	21288553	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018813, intron 1 of 17)	intron (NM_018813, intron 1 of 17)	1756.0	NM_018813	54451.0	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	35.47	38.25	18.5	36.43	30.79	36.97	35.91	43.77	26.85
Merged-chr5-104943098-1	chr5	104942598	104943598	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030239, intron 13 of 15)	intron (NM_030239, intron 13 of 15)	39619.0	NM_030239	27405.0	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP binding cassette subfamily G member 3	protein-coding	14.3	16.13	25.9	10.12	5.6	4.02	12.67	11.94	21.86
Merged-chr4-11152032-1	chr4	11151532	11152532	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4409.0	NM_001199105	60599.0	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	5.15	2.3	1.85	2.7	2.8	8.04	4.22	2.21	6.87
Merged-chr2-102685925-1	chr2	102685425	102686425	+	628.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 1 of 10)	intron (NM_001077514, intron 1 of 10)	-20513.0	NM_011393	20511.0	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.86	2.3	1.85	4.05	2.8	1.61	6.34	1.77	5.0
Merged-chr16-31918612-3	chr16	31918104	31919104	+	627.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	4.58	2.76	1.85	4.72	1.4	0.0	7.39	1.33	1.25
Merged-chr2-141012109-2	chr2	141011619	141012619	+	627.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013802, intron 4 of 18)	intron (NM_001013802, intron 4 of 18)	-340643.0	NM_178382	71436.0	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.15	4.15	0.0	4.72	1.4	6.43	1.06	3.98	1.25
Merged-chr10-8715870-2	chr10	8715373	8716373	+	627.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	170197.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	1.72	2.76	5.55	5.4	2.8	2.41	7.39	0.0	2.5
Merged-chr7-102394101-3	chr7	102393617	102394617	+	627.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	ID_B1|SINE|B4	-47578.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	9.72	13.82	22.2	18.22	7.46	8.04	6.34	4.86	8.12
Merged-chr11-62456829-3	chr11	62456345	62457345	+	627.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177229, intron 1 of 8)	CpG	487.0	NM_177229	20185.0	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	121.28	79.25	76.77	119.43	70.44	80.38	129.91	61.46	64.95
Merged-chr6-38900920-2	chr6	38900442	38901442	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18044.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	191.64	193.99	110.99	165.98	136.22	106.9	166.88	226.39	87.43
Merged-chr4-138856649-2	chr4	138856153	138857153	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122954, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	6816.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	4.0	0.0	7.4	1.35	2.33	3.22	3.17	3.1	4.37
Merged-chr15-78448415-2	chr15	78447915	78448915	+	627.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355601, intron 10 of 17)	intron (NM_001355601, intron 10 of 17)	19851.0	NR_110357	72844.0	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	38.9	74.65	47.17	51.95	42.92	58.68	40.14	41.12	35.6
Merged-chr6-48772180-2	chr6	48771731	48772731	+	627.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1380.0	NM_031247	83408.0	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	3.43	4.61	0.0	3.37	2.33	4.02	6.34	2.65	1.25
Merged-chr18-56566191-1	chr18	56565691	56566691	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	3622.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	12.01	7.37	2.77	8.1	11.66	13.66	9.51	10.61	19.98
Merged-chr13-29983213-1	chr13	29982713	29983713	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010093, intron 1 of 6)	intron (NM_010093, intron 1 of 6)	1178.0	NM_001289920	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	30.89	25.8	14.8	16.87	14.46	22.51	22.18	10.61	17.49
Merged-chr11-115322500-3	chr11	115322019	115323019	+	627.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362400)	promoter-TSS (NM_001362400)	-11.0	NM_001362400	237987.0	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	5.15	0.0	5.55	0.67	0.93	0.0	0.0	0.0	0.0
Merged-chr11-98864182-1	chr11	98863682	98864682	+	627.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_197940, intron 1 of 7)	intron (NM_197940, intron 1 of 7)	584.0	NM_197940	68524.0	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	98.97	44.24	53.65	73.54	25.19	63.5	86.61	49.52	61.83
Merged-chr19-23146789-1	chr19	23146289	23147289	+	627.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	-2642.0	NR_035423	100316672.0		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.57	1.84	3.7	5.4	9.8	8.84	19.01	11.5	18.74
Merged-chr3-51561833-2	chr3	51561333	51562333	+	627.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033624, intron 1 of 4)	intron (NR_033624, intron 1 of 4)	-1010.0	NM_080793	73251.0	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	45.76	31.79	26.82	50.6	39.19	30.54	32.74	19.9	23.73
Merged-chr11-60199894-3	chr11	60199374	60200374	+	627.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105886)	TTS (NR_105886)	743.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	6.86	6.45	16.65	6.07	2.8	2.41	4.22	5.75	7.49
Merged-chr11-97701638-1	chr11	97701138	97702138	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_009545	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	5.15	4.15	2.77	6.75	1.87	4.82	5.28	3.98	0.0
Merged-chr6-115897644-2	chr6	115897135	115898135	+	627.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167763, intron 14 of 28)	MIRb|SINE|MIR	-34292.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	6.29	5.53	8.32	8.77	10.73	5.63	9.51	7.52	5.0
Merged-chr4-128627140-1	chr4	128626640	128627640	+	627.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8521.0	NM_205823	384059.0	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	6.29	2.3	1.85	3.37	1.4	0.8	7.39	1.77	0.0
Merged-chr10-117837260-1	chr10	117836760	117837760	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	intron (NM_024457, intron 1 of 7)	8714.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	54.92	56.68	62.9	43.18	37.79	61.89	55.98	53.06	31.23
Merged-chr7-127355959-1	chr7	127355459	127356459	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MYSERV6-int|LTR|ERVK	-10645.0	NM_146202	233890.0	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	6.29	1.84	0.0	4.05	2.33	3.22	4.22	2.21	1.87
Merged-chr12-24980498-2	chr12	24979989	24980989	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081378, intron 1 of 31)	L1ME1|LINE|L1	5557.0	NM_001081378	77480.0	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	32.04	31.33	29.6	36.43	35.45	38.58	155.26	118.5	67.45
Merged-chr10-14173631-1	chr10	14173131	14174131	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	207252.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	26.31	14.28	29.6	21.59	9.8	9.65	30.63	30.07	14.99
Merged-chr2-50789401-1	chr2	50788901	50789901	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120283.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	32.61	37.32	32.37	51.28	53.65	53.05	57.03	73.84	47.46
Merged-chr2-52943455-2	chr2	52942946	52943946	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85578.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	175.62	151.6	73.07	204.44	160.01	149.5	190.11	149.89	83.06
Merged-chr6-72490651-2	chr6	72490142	72491142	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-51084.0	NM_145569	232087.0	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	1.72	3.23	5.55	1.35	1.4	9.65	4.22	3.54	6.25
Merged-chr7-120947286-2	chr7	120946790	120947790	+	627.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025298, exon 21 of 21)	3' UTR (NM_025298, exon 21 of 21)	29546.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	9.72	11.06	7.4	22.27	19.59	27.33	10.56	6.19	4.37
Merged-chrX-48435476-1	chrX	48434976	48435976	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	27656.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	5.15	15.67	10.17	12.82	9.8	20.09	9.51	9.29	11.87
Merged-chr7-101857307-1	chr7	101856807	101857807	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303239)	promoter-TSS (NM_001303239)	-117.0	NM_001303239	14276.0	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	9.72	10.14	1.85	14.84	6.06	4.82	7.39	5.75	4.37
Merged-chr18-61099940-2	chr18	61099446	61100446	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-5626.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	73.22	43.31	52.72	74.89	39.65	49.83	71.82	44.22	49.34
Merged-chr8-121577960-2	chr8	121577446	121578446	+	627.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133765, intron 1 of 8)	intron (NM_133765, intron 1 of 8)	860.0	NM_133765	76454.0	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	10.87	12.44	21.27	26.99	15.39	10.45	24.29	8.84	19.36
Merged-chr4-33271910-2	chr4	33271411	33272411	+	627.450012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23124.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	49.2	41.47	42.55	29.69	31.72	44.21	27.46	37.14	26.23
Merged-chr17-24480497-1	chr17	24479997	24480997	+	627.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-1419.0	NM_019988	56716.0	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	20.02	11.98	21.27	12.14	4.2	29.74	10.56	7.96	14.36
Merged-chr18-65001296-1	chr18	65000796	65001796	+	627.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-22231.0	NM_031881	83814.0	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	7.44	1.38	6.47	8.1	2.8	0.0	3.17	2.21	13.74
Merged-chr1-75467749-2	chr1	75467245	75468245	+	627.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183022, intron 1 of 9)	intron (NM_183022, intron 1 of 9)	11726.0	NM_001001566	74241.0	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	3.43	1.38	0.0	1.35	0.93	1.61	2.11	0.88	1.25
Merged-chr1-170160717-2	chr1	170160225	170161225	+	627.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133806, intron 3 of 10)	L1MEg1|LINE|L1	14239.0	NM_133806	107652.0	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	20.02	16.13	20.35	27.66	30.32	47.42	50.7	35.82	36.22
Merged-chr7-130074076-3	chr7	130073571	130074571	+	627.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111906.0	NR_046077	100043150.0	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	1.14	3.23	0.0	2.7	6.53	1.61	4.22	3.1	6.25
Merged-chr10-79997328-3	chr10	79996814	79997814	+	627.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013850)	promoter-TSS (NM_013850)	-294.0	NM_001347081	27403.0	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	10.3	8.75	12.95	17.54	13.06	20.9	15.84	12.82	15.61
Merged-chr9-110342204-2	chr9	110341706	110342706	+	627.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001144, intron 1 of 22)	intron (NM_001001144, intron 1 of 22)	8850.0	NM_001001144	235623.0	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	10.3	8.75	1.85	6.07	8.4	7.23	3.17	3.1	8.12
Merged-chr7-98991507-1	chr7	98991007	98992007	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 9 of 14)	B2_Mm2|SINE|B2	149637.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	3.43	3.23	0.0	10.12	6.06	8.84	5.28	7.52	5.62
Merged-chrX-61694999-1	chrX	61694499	61695499	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14617.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	13.16	21.2	8.32	14.17	20.99	19.29	50.7	38.91	18.74
Merged-chr15-30738819-1	chr15	30738319	30739319	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	intron (NM_001355502, intron 9 of 21)	-300307.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	4.0	5.99	0.0	8.77	7.0	2.41	4.22	4.42	1.87
Merged-chr4-32304439-1	chr4	32303939	32304939	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-112996.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.58	1.38	1.85	3.37	2.33	0.8	4.22	1.33	5.0
Merged-chr13-36088399-1	chr13	36087899	36088899	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201358, intron 2 of 2)	intron (NM_201358, intron 2 of 2)	28958.0	NM_201358	380840.0	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	2.29	5.07	1.85	5.4	3.73	3.22	3.17	0.44	1.25
Merged-chr7-45051070-1	chr7	45050570	45051570	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175022, intron 2 of 13)	intron (NM_175022, intron 2 of 13)	1811.0	NM_175022	233210.0	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	2.86	3.23	1.85	2.02	0.47	6.43	3.17	2.65	6.25
Merged-chr19-10502781-2	chr19	10502296	10503296	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025333, exon 4 of 4)	3' UTR (NM_025333, exon 4 of 4)	-19899.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	1.72	3.23	0.92	4.05	1.87	4.82	4.22	2.65	1.87
Merged-chr14-33392980-1	chr14	33392480	33393480	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_016700, exon 6 of 12)	exon (NM_016700, exon 6 of 12)	18044.0	NM_001310452	26419.0	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	68.65	83.4	41.62	53.3	52.25	46.62	117.24	160.95	58.71
Merged-chr3-136914589-1	chr3	136914089	136915089	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008913, intron 10 of 13)	intron (NM_008913, intron 10 of 13)	244523.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	8.01	4.15	2.77	4.72	2.8	1.61	2.11	4.42	2.5
Merged-chr5-140798414-1	chr5	140797914	140798914	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	ID|SINE|ID	32017.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	30.32	33.64	18.5	46.56	28.92	45.82	39.08	28.3	13.74
Merged-chr12-33159580-1	chr12	33159080	33160080	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028139, intron 2 of 3)	intron (NM_028139, intron 2 of 3)	11894.0	NM_028139	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	3.43	9.22	3.7	3.37	4.2	6.43	12.67	5.75	2.5
Merged-chr10-127428167-1	chr10	127427667	127428667	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	7300.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	6.86	6.91	5.55	8.77	6.06	9.65	6.34	5.31	8.74
Merged-chr2-146399842-1	chr2	146399342	146400342	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	112162.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	5.72	5.07	1.85	3.37	3.73	4.82	3.17	2.21	0.0
Merged-chr3-88137438-1	chr3	88136938	88137938	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-4934.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	26.89	16.59	33.3	21.59	20.06	24.11	24.29	8.84	9.99
Merged-chr19-5456984-1	chr19	5456484	5457484	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_198616, exon 1 of 1)	exon (NM_198616, exon 1 of 1)	579.0	NM_198616	240514.0	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	61.78	36.4	43.47	66.12	77.91	61.09	55.98	41.56	29.35
Merged-chr13-44483605-1	chr13	44483105	44484105	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	43878.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	22.88	17.97	21.27	22.94	15.39	16.88	47.53	50.41	31.23
Merged-chr7-130936027-1	chr7	130935527	130936527	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019564)	promoter-TSS (NM_019564)	-176.0	NM_019564	56213.0	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	1.72	1.84	1.85	4.72	0.47	0.0	1.06	0.0	1.87
Merged-chrX-9199942-1	chrX	9199442	9200442	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173414)	promoter-TSS (NM_173414)	-31.0	NM_173414	236285.0	Mm.245119	NM_173414	ENSMUSG00000047344	Lancl3	6030463G20Rik	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding	2.86	0.46	1.85	4.72	0.93	4.82	2.11	0.0	0.0
Merged-chr14-76169306-1	chr14	76168806	76169806	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	58415.0	NM_013745	27275.0	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	5.15	2.76	3.7	5.4	3.27	3.22	4.22	1.33	3.75
Merged-chr13-34149210-1	chr13	34148710	34149710	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13754.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	8.01	5.99	3.7	7.42	4.2	4.82	9.51	3.54	8.74
Merged-chr2-121143481-1	chr2	121142981	121143981	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290812, intron 3 of 8)	intron (NM_001290812, intron 3 of 8)	1388.0	NM_029475	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	13.73	7.83	9.25	16.19	4.67	11.25	12.67	6.19	11.24
Merged-chr8-124775874-1	chr8	124775374	124776374	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17145.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	2.86	0.46	1.85	4.05	2.8	3.22	1.06	0.0	3.75
Merged-chr1-180344965-1	chr1	180344465	180345465	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-14416.0	NR_003623	277333.0	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	11.44	13.82	1.85	3.37	6.53	12.06	8.45	3.1	9.99
Merged-chr17-47687616-1	chr17	47687116	47688116	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045945)	promoter-TSS (NR_045945)	6.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	271.73	250.67	131.34	203.09	243.52	139.06	168.99	217.55	94.93
Merged-chr17-80761378-1	chr17	80760878	80761878	+	627.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-33353.0	NM_001290345	225028.0	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	5.72	3.23	3.7	2.7	0.47	6.43	0.0	0.44	3.75
Merged-chr2-45270765-1	chr2	45270265	45271265	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153323.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	128.14	139.16	80.47	119.43	104.5	121.37	124.63	130.88	99.3
Merged-chr7-100372696-1	chr7	100372196	100373196	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028292)	promoter-TSS (NM_028292)	463.0	NM_001017985	277939.0	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	80.66	78.79	47.17	63.42	76.04	85.2	68.65	86.22	53.71
Merged-chr2-119156252-2	chr2	119155733	119156733	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033136, intron 2 of 12)	intron (NM_001033136, intron 2 of 12)	801.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	128.71	134.09	123.94	104.58	83.04	75.56	113.01	133.98	73.07
Merged-chr18-65795530-1	chr18	65795030	65796030	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5048.0	NM_025468	66286.0	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	2.86	5.07	5.55	1.35	1.87	3.22	2.11	0.88	2.5
Merged-chr10-22017400-1	chr10	22016900	22017900	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22734.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	5.72	3.69	5.55	4.72	0.47	3.22	1.06	0.88	3.75
Merged-chr5-99283817-1	chr5	99283317	99284317	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30890.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	6.86	5.99	2.77	12.14	9.8	8.84	3.17	0.88	2.5
Merged-chr10-67629744-1	chr10	67629244	67630244	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-57785.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	29.75	16.59	10.17	26.99	18.19	30.54	22.18	22.55	8.12
Merged-chr14-103680122-1	chr14	103679622	103680622	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	19310.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.29	2.76	7.4	11.47	5.13	1.61	6.34	4.42	6.87
Merged-chr19-21051083-1	chr19	21050583	21051583	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53627.0	NR_126458	75354.0	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	8.01	8.75	7.4	12.82	13.53	24.11	3.17	6.63	0.0
Merged-chr14-70929118-1	chr14	70928618	70929618	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	39011.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	9.72	14.75	18.5	12.82	7.46	12.86	6.34	2.21	9.37
Merged-chr13-12147392-1	chr13	12146892	12147892	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39096.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	4.0	6.45	5.55	8.77	6.53	6.43	7.39	2.65	1.25
Merged-chr17-15631507-1	chr17	15631007	15632007	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045431)	promoter-TSS (NR_045431)	-281.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	2.29	5.99	1.85	4.05	3.27	3.22	4.22	1.33	3.12
Merged-chr10-8758649-1	chr10	8758149	8759149	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 8 of 19)	intron (NM_175155, intron 8 of 19)	127421.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	150.45	155.28	75.85	128.2	127.82	132.63	120.41	125.58	61.83
Merged-chrX-95166076-1	chrX	95165576	95166576	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290385, exon 1 of 10)	5' UTR (NM_001290385, exon 1 of 10)	463.0	NM_001290385	236915.0	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	7.44	6.45	1.85	31.71	24.26	35.37	4.22	3.1	5.0
Merged-chr12-34504432-1	chr12	34503932	34504932	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	24457.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	4.58	13.82	7.4	6.07	6.06	1.61	5.28	7.52	7.49
Merged-chr8-56486190-1	chr8	56485690	56486690	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1222.0	NR_131020	75123.0	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	1.72	6.45	1.85	6.07	0.93	1.61	6.34	4.86	3.12
Merged-chr6-17842956-1	chr6	17842456	17843456	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022332, intron 3 of 15)	intron (NM_022332, intron 3 of 15)	93786.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.0	7.83	0.0	3.37	1.87	6.43	1.06	0.0	3.75
Merged-chr1-88240891-1	chr1	88240391	88241391	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 17 of 41)	intron (NM_001281466, intron 17 of 41)	13871.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	4.0	7.37	7.4	8.77	7.93	27.33	7.39	7.07	13.74
Merged-chrX-137017901-1	chrX	137017401	137018401	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082412, intron 4 of 6)	intron (NM_001082412, intron 4 of 6)	20401.0	NM_001082412	67062.0	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	2.86	7.83	4.62	7.42	12.13	7.23	8.45	3.1	8.74
Merged-chr9-86695493-1	chr9	86694993	86695993	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045835)	promoter-TSS (NR_045835)	51.0	NR_045835	319556.0	Mm.386894	NR_045835	ENSMUSG00000087466	A330041J22Rik	-	RIKEN cDNA A330041J22 gene	ncRNA	7.44	1.38	0.0	10.12	3.27	0.0	3.17	0.44	3.75
Merged-chr4-107829142-1	chr4	107828642	107829642	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080926, intron 2 of 18)	intron (NM_001080926, intron 2 of 18)	-6120.0	NR_151515	619295.0	Mm.331760	NM_001033800		Lrp8os2	B230314M03Rik	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2	ncRNA	3.43	1.84	1.85	2.02	4.67	11.25	2.11	0.0	1.25
Merged-chr4-122960507-2	chr4	122960037	122961037	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029662, intron 1 of 13)	intron (NM_029662, intron 1 of 13)	651.0	NM_029662	76574.0	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	16.59	6.45	3.7	2.02	4.2	6.43	13.73	7.52	2.5
Merged-chr1-161412244-1	chr1	161411744	161412744	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	16806.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	8.58	3.69	1.85	9.45	6.53	12.86	6.34	5.75	1.25
Merged-chr8-61877809-1	chr8	61877309	61878309	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081390, exon 2 of 20)	exon (NM_001081390, exon 2 of 20)	24881.0	NM_001081390	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	5.15	2.76	7.4	6.75	9.33	6.43	2.11	6.63	1.87
Merged-chr12-51694125-1	chr12	51693625	51694625	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	B1_Mur3|SINE|Alu	-2211.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	48.05	76.95	62.9	42.51	50.38	58.68	80.27	68.54	72.45
Merged-chr2-4447509-1	chr2	4447009	4448009	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	46533.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	20.59	13.36	8.32	20.92	7.93	15.27	35.91	19.46	11.87
Merged-chr10-128702808-2	chr10	128702318	128703318	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183417, intron 3 of 7)	RSINE1|SINE|B4	2233.0	NM_183417	12566.0	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	18.31	13.82	7.4	13.49	11.2	11.25	13.73	13.27	13.12
Merged-chr10-42990104-1	chr10	42989604	42990604	+	627.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153349, intron 1 of 2)	B3|SINE|B2	1058.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	4.58	2.76	1.85	6.07	1.87	1.61	7.39	2.21	0.62
Merged-chr2-131955337-1	chr2	131954837	131955837	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001278520, exon 3 of 3)	3' UTR (NM_001278520, exon 3 of 3)	4300.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	2.86	3.69	0.0	4.72	5.13	3.22	6.34	2.21	0.0
Merged-chr11-118493790-2	chr11	118493299	118494299	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039168, intron 14 of 14)	intron (NM_001039168, intron 14 of 14)	16967.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	44.05	39.63	33.3	49.25	42.45	76.36	70.76	62.79	51.21
Merged-chr8-33944877-1	chr8	33944377	33945377	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L-int|LTR|ERVL-MaLR	-15014.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.43	1.84	0.0	3.37	2.33	4.02	0.0	2.65	1.25
Merged-chr19-11411751-1	chr19	11411251	11412251	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029499, intron 1 of 6)	intron (NM_029499, intron 1 of 6)	4090.0	NM_029499	64380.0	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	6.86	6.91	11.1	8.1	7.46	4.82	8.45	7.52	13.12
Merged-chr2-144636005-1	chr2	144635505	144636505	+	627.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	36052.0	NM_025314	66044.0	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DTD|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	2.29	2.3	1.85	2.02	1.4	4.02	4.22	5.31	2.5
Merged-chr5-134614555-2	chr5	134614047	134615047	+	626.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	478.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	20.59	2.3	12.95	11.47	9.8	17.68	10.56	7.07	1.25
Merged-chr9-115479111-3	chr9	115478613	115479613	+	626.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	97294.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	1.14	5.53	2.77	5.4	2.33	0.0	10.56	10.61	2.5
Merged-chr11-121705320-3	chr11	121704794	121705794	+	626.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	2867.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	72.08	76.03	33.3	77.59	45.72	57.87	66.54	58.81	44.34
Merged-chr11-107676812-3	chr11	107676312	107677312	+	626.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	39090.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	34.9	42.39	27.75	51.28	34.52	53.85	46.47	65.0	41.22
Merged-chr13-48871237-3	chr13	48870749	48871749	+	626.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011078)	promoter-TSS (NM_011078)	-364.0	NM_011078	18676.0	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	105.26	98.61	90.65	101.88	91.9	69.13	129.91	71.63	59.33
Merged-chr13-57022919-2	chr13	57022412	57023412	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-127123.0	NM_001302373	26946.0	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.57	0.46	1.85	3.37	2.33	4.82	8.45	5.75	1.25
Merged-chr2-156352345-2	chr2	156351825	156352825	+	626.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027585, intron 8 of 12)	intron (NM_027585, intron 8 of 12)	-39621.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	23.45	16.59	24.05	0.67	2.8	3.22	31.69	12.38	9.37
Merged-chr18-65965230-1	chr18	65964730	65965730	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145493, intron 2 of 2)	intron (NM_145493, intron 2 of 2)	4948.0	NM_145493	225644.0	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.57	0.46	1.85	2.7	0.93	3.22	2.11	0.0	2.5
Merged-chr9-53398515-2	chr9	53398021	53399021	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_212445, intron 7 of 7)	intron (NM_212445, intron 7 of 7)	2365.0	NR_105807	102466640.0		NR_105807	ENSMUSG00000098362	Mir130c	Gm27641|mmu-mir-130c	microRNA 130c	ncRNA	5.72	1.38	7.4	8.77	1.4	3.22	3.17	3.54	8.74
Merged-chr12-35889982-2	chr12	35889487	35890487	+	626.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35634.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	34.32	30.41	7.4	20.92	22.39	26.53	13.73	22.55	8.74
Merged-chrX-142372615-1	chrX	142372115	142373115	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	17920.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	13.16	24.88	16.65	23.62	12.6	20.9	31.69	27.86	8.12
Merged-chr14-19995827-1	chr14	19995327	19996327	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16|LTR|ERVK	-18578.0	NM_001285909	14702.0	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	16.02	7.83	11.1	11.47	11.66	20.09	6.34	5.75	11.24
Merged-chr15-56695592-1	chr15	56695092	56696092	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1046.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	2.86	2.3	4.62	6.07	1.87	0.0	2.11	1.77	1.25
Merged-chr19-36554060-1	chr19	36553560	36554560	+	626.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172637)	promoter-TSS (NM_172637)	-579.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	9.72	3.23	3.7	8.1	7.93	6.43	12.67	7.96	9.99
Merged-chr19-45544271-3	chr19	45543785	45544785	+	626.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16279.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	15.45	3.23	7.4	8.77	4.67	3.22	5.28	3.98	3.75
Merged-chr11-11742919-2	chr11	11742423	11743423	+	626.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301865, intron 3 of 6)	Tigger16a|DNA|TcMar-Tigger	52746.0	NM_001301863	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	6.29	5.07	3.7	8.77	7.93	3.22	3.17	6.19	8.12
Merged-chr17-34437525-2	chr17	34437049	34438049	+	626.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001177, intron 6 of 19)	intron (NM_001001177, intron 6 of 19)	38388.0	NM_030746	632126.0	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	12.59	13.36	16.65	3.37	4.67	6.43	6.34	7.96	9.99
Merged-chr14-101608126-2	chr14	101607664	101608664	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081278, exon 1 of 19)	exon (NM_001081278, exon 1 of 19)	1027.0	NM_001081278	210789.0	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	15.45	4.15	7.4	13.49	6.53	8.04	13.73	4.86	9.37
Merged-chr5-124628532-1	chr5	124628032	124629032	+	626.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011596)	promoter-TSS (NM_011596)	-520.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	88.1	75.11	74.0	63.42	59.71	87.61	91.89	84.45	49.34
Merged-chr19-47178891-2	chr19	47178345	47179345	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_021360)	promoter-TSS (NM_021360)	25.0	NM_021360	18011.0	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	3.43	1.38	0.0	2.7	1.4	3.22	3.17	2.21	7.49
Merged-chr6-83651318-2	chr6	83650807	83651807	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016751, intron 4 of 6)	L1_Mus1|LINE|L1	4809.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	57.21	57.6	53.65	66.8	102.17	82.79	97.17	84.01	48.09
Merged-chr13-5705148-2	chr13	5704658	5705658	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	152934.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	12.01	2.3	9.25	4.05	4.2	3.22	6.34	8.4	7.49
Merged-chr19-5389809-2	chr19	5389285	5390285	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033224, exon 1 of 1)	non-coding (NR_033224, exon 1 of 1)	-1082.0	NM_016882	20227.0	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	55.49	51.61	38.85	32.39	30.79	56.27	32.74	26.53	28.73
Merged-chr3-9853229-1	chr3	9852729	9853729	+	626.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19550.0	NM_001195031	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	1.14	4.61	1.85	2.7	2.33	1.61	6.34	11.94	7.49
Merged-chr18-39246524-1	chr18	39246024	39247024	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 16 of 21)	intron (NM_001361073, intron 16 of 21)	240721.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	10.87	10.14	6.47	12.14	9.33	8.04	6.34	7.96	8.74
Merged-chr11-115496740-2	chr11	115496215	115497215	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008258)	TTS (NM_008258)	-4901.0	NM_015807	50773.0	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	22.88	21.66	43.47	12.14	11.2	21.7	15.84	7.96	19.98
Merged-chr5-43890313-1	chr5	43889813	43890813	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	21504.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	10.3	17.51	14.8	13.49	12.6	20.9	11.62	13.71	14.99
Merged-chr9-83533219-1	chr9	83532719	83533719	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15119.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	10.87	7.37	1.85	12.14	6.06	11.25	9.51	5.31	8.74
Merged-chr5-99219180-2	chr5	99218679	99219679	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	MTC|LTR|ERVL-MaLR	33748.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	10.3	5.53	11.1	17.54	7.93	22.51	11.62	11.94	14.99
Merged-chr2-166082369-2	chr2	166081863	166082863	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 11 of 20)	intron (NM_001252579, intron 11 of 20)	72922.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.15	0.92	1.85	1.35	0.47	2.41	4.22	0.0	0.0
Merged-chr1-131765730-2	chr1	131765238	131766238	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177243, intron 18 of 20)	intron (NM_177243, intron 18 of 20)	21716.0	NM_177243	320718.0	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	1.72	0.46	3.7	3.37	0.47	1.61	5.28	0.0	1.25
Merged-chr3-21917761-2	chr3	21917261	21918261	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-158891.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.58	2.3	5.55	10.12	6.53	0.0	7.39	2.21	3.75
Merged-chr5-23616198-2	chr5	23615685	23616685	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	386.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	82.95	129.02	61.97	106.61	146.02	93.24	149.98	142.38	66.2
Merged-chr5-139735789-2	chr5	139735304	139736304	+	626.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174850, intron 1 of 16)	intron (NM_174850, intron 1 of 16)	529.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	60.64	47.92	59.2	66.12	39.65	38.58	117.24	128.23	44.34
Merged-chr2-31442649-1	chr2	31442149	31443149	+	626.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27621.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	18.31	4.61	7.4	2.7	3.27	1.61	2.11	4.42	3.75
Merged-chr19-18625160-2	chr19	18624655	18625655	+	626.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	6658.0	NM_017375	20409.0	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	36.61	17.05	16.65	37.11	16.79	29.74	25.35	19.01	16.24
Merged-chr4-149756566-3	chr4	149756089	149757089	+	626.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027460, intron 2 of 6)	intron (NM_027460, intron 2 of 6)	17678.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	7.44	6.91	3.7	6.75	5.13	6.43	5.28	6.19	6.25
Merged-chr15-37135791-1	chr15	37135291	37136291	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-97245.0	NM_026496	252973.0	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead like transcription factor 2	protein-coding	6.86	6.91	7.4	10.12	13.53	14.47	12.67	10.17	6.25
Merged-chr17-83044041-1	chr17	83043541	83044541	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	34184.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	1.14	1.84	0.0	4.05	0.93	4.82	2.11	0.0	1.25
Merged-chr6-88306917-1	chr6	88306417	88307417	+	626.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84649.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	25.17	15.21	37.0	21.59	12.13	36.17	14.79	15.48	18.74
Merged-chr11-86485203-2	chr11	86484672	86485672	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029788, intron 1 of 8)	CpG	515.0	NM_029788	76892.0	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	197.36	182.01	128.57	187.57	183.34	139.86	162.65	192.34	116.79
Merged-chr2-115368507-2	chr2	115368013	115369013	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24233.0	NR_040516	78193.0	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	2.29	0.46	4.62	6.75	6.06	0.0	3.17	1.33	4.37
Merged-chr17-26948639-1	chr17	26948139	26949139	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037244)	promoter-TSS (NR_037244)	-520.0	NR_037244	100526534.0		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	7.44	4.15	9.25	10.12	0.93	1.61	4.22	0.88	3.12
Merged-chr19-5511313-2	chr19	5510838	5511838	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024560)	promoter-TSS (NM_001024560)	-821.0	NM_001024560	225861.0	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	173.33	175.56	138.74	163.28	127.82	98.06	168.99	189.69	90.56
Merged-chr2-104444947-2	chr2	104444465	104445465	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010434, intron 3 of 15)	intron (NM_010434, intron 3 of 15)	-16025.0	NR_035432	100316678.0		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	2.86	4.15	3.7	2.7	3.73	0.0	3.17	5.31	5.0
Merged-chr10-79664220-1	chr10	79663720	79664720	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013591)	promoter-TSS (NM_013591)	-339.0	NM_013591	17123.0	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525|MAdCAM-1	mucosal vascular addressin cell adhesion molecule 1	protein-coding	6.86	0.92	0.0	3.37	0.47	0.8	2.11	0.0	0.0
Merged-chr14-31955145-2	chr14	31954632	31955632	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-73971.0	NM_030166	78754.0	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	3.43	4.61	2.77	4.72	2.8	0.0	1.06	0.88	2.5
Merged-chr2-50984042-2	chr2	50983539	50984539	+	626.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74355.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	12.01	12.9	12.02	10.12	13.06	12.06	9.51	16.36	9.99
Merged-chr19-6331338-2	chr19	6330834	6331834	+	626.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3645.0	NM_001168488	17283.0	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	16.02	17.51	7.4	9.45	8.4	1.61	9.51	15.48	9.99
Merged-chr16-97463556-1	chr16	97463056	97464056	+	626.166687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010846)	promoter-TSS (NM_010846)	-650.0	NR_003520	17857.0	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	66.93	78.79	71.22	88.39	54.11	60.28	73.93	78.26	68.7
Merged-chr7-138847628-1	chr7	138847128	138848128	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026391, intron 2 of 8)	intron (NM_026391, intron 2 of 8)	1242.0	NM_026391	52432.0	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	21.17	27.19	19.42	22.27	17.73	12.06	23.24	17.69	16.24
Merged-chr14-17904485-2	chr14	17903998	17904998	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113417, intron 2 of 9)	intron (NM_001113417, intron 2 of 9)	-77146.0	NM_009380	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	16.59	17.51	16.65	12.82	14.93	18.49	30.63	33.6	25.61
Merged-chr1-59604121-1	chr1	59603621	59604621	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	66713.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	1.14	0.92	3.7	2.02	0.47	0.8	6.34	2.65	2.5
Merged-chr10-80140442-1	chr10	80139942	80140942	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-1075.0	NR_036582	100503659.0	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	19.45	8.29	11.1	20.92	7.0	10.45	9.51	7.96	14.99
Merged-chrX-151813832-1	chrX	151813332	151814332	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021523, intron 2 of 82)	intron (NM_021523, intron 2 of 82)	10550.0	NM_021523	59026.0	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	2.29	10.6	7.4	2.02	4.2	12.86	7.39	6.63	5.0
Merged-chr10-98941029-1	chr10	98940529	98941529	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359507, intron 1 of 21)	intron (NM_001359507, intron 1 of 21)	25877.0	NM_026482	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.58	8.29	7.4	7.42	5.6	9.65	10.56	5.31	1.25
Merged-chr15-64111479-1	chr15	64110979	64111979	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010026, intron 25 of 30)	Lx8b|LINE|L1	-51031.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	3.43	3.23	0.0	10.12	9.8	1.61	9.51	3.54	0.0
Merged-chr3-144170720-1	chr3	144170220	144171220	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	31612.0	NM_001161770	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.43	0.92	5.55	2.02	2.8	5.63	4.22	3.1	3.75
Merged-chr5-124484158-1	chr5	124483658	124484658	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029532, intron 1 of 1)	B2_Mm2|SINE|B2	1003.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	125.28	97.69	81.4	129.55	95.17	86.81	135.19	139.28	71.2
Merged-chr7-123201499-1	chr7	123200999	123201999	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13367.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	9.72	19.81	18.5	12.82	5.13	3.22	12.67	9.73	5.0
Merged-chr3-51540009-1	chr3	51539509	51540509	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080793, intron 3 of 7)	intron (NM_080793, intron 3 of 7)	-19748.0	NR_033624	100039684.0	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	4.58	2.76	9.25	2.7	3.27	4.82	4.22	0.44	9.99
Merged-chr19-12596429-1	chr19	12595929	12596929	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015503, exon 1 of 2)	non-coding (NR_015503, exon 1 of 2)	137.0	NR_015503	74333.0	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	16.59	5.99	2.77	17.54	8.86	1.61	9.51	7.52	6.25
Merged-chr6-49075106-1	chr6	49074606	49075606	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_029353, exon 2 of 4)	exon (NM_029353, exon 2 of 4)	1311.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	37.76	41.01	29.6	18.89	20.99	17.68	34.85	30.07	16.24
Merged-chr7-130762282-1	chr7	130761782	130762782	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021314, intron 17 of 17)	intron (NM_021314, intron 17 of 17)	-11787.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	3.43	3.23	0.0	4.05	1.87	0.8	2.11	0.44	2.5
Merged-chr5-136568114-3	chr5	136567580	136568580	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009986)	promoter-TSS (NM_009986)	-590.0	NM_001291238	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	24.6	20.74	15.72	28.34	31.72	20.9	36.97	38.03	24.98
Merged-chr17-81380058-1	chr17	81379558	81380558	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_104580, exon 9 of 9)	non-coding (NR_104580, exon 9 of 9)	-314973.0	NM_028138	72167.0	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	7.44	2.76	0.92	6.07	3.73	9.65	7.39	4.42	1.25
Merged-chr10-121457922-1	chr10	121457422	121458422	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	ID4|SINE|ID	18328.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	38.9	46.54	50.87	45.21	36.39	40.19	21.12	20.34	12.49
Merged-chr9-78073936-2	chr9	78073421	78074421	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	21963.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	9.72	13.36	13.87	10.8	8.4	21.7	19.01	24.76	9.99
Merged-chr11-21448130-2	chr11	21447636	21448636	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	63044.0	NR_028259	237694.0	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	7.44	5.07	0.0	3.37	2.8	3.22	11.62	11.05	5.0
Merged-chr8-72365946-1	chr8	72365446	72366446	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007944, intron 21 of 23)	X3_LINE|LINE|RTE-BovB	46884.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	4.58	4.61	0.92	4.05	3.73	4.02	2.11	3.1	2.5
Merged-chr17-45546023-1	chr17	45545523	45546523	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013749, intron 2 of 2)	intron (NM_001013749, intron 2 of 2)	3654.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	3.43	0.92	0.0	2.02	0.47	11.25	5.28	0.88	1.25
Merged-chr8-72326739-1	chr8	72326239	72327239	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7677.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	8.58	5.07	7.4	3.37	2.8	11.25	4.22	2.65	5.0
Merged-chr18-6666934-1	chr18	6666434	6667434	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MMVL30-int|LTR|ERV1	63301.0	NM_027598	70901.0	Mm.158484	NM_027598	ENSMUSG00000039540	4921524L21Rik	-	RIKEN cDNA 4921524L21 gene	protein-coding	9.15	11.06	7.4	4.05	4.67	3.22	1.06	3.54	0.0
Merged-chr9-64734781-1	chr9	64734281	64735281	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017382, intron 1 of 4)	intron (NM_017382, intron 1 of 4)	2975.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	28.6	35.48	21.27	80.97	53.65	38.58	35.91	22.99	21.86
Merged-chr3-95173614-1	chr3	95173114	95174114	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_073549, exon 19 of 19)	non-coding (NR_073549, exon 19 of 19)	9275.0	NM_011351	20360.0	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	1.14	1.38	3.7	7.42	2.33	4.02	4.22	0.0	0.0
Merged-chr14-118101393-1	chr14	118100893	118101893	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6-int|LTR|ERVK	31372.0	NM_029578	76355.0	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	4.58	4.15	7.4	2.7	4.2	4.82	3.17	3.54	2.5
Merged-chr19-44419060-1	chr19	44418560	44419560	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11351.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	4.0	4.61	3.7	11.47	0.93	2.41	4.22	4.86	2.5
Merged-chr11-117176493-1	chr11	117175993	117176993	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23168.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.43	5.53	5.55	2.7	2.8	2.41	8.45	7.52	3.75
Merged-chr13-105214083-1	chr13	105213583	105214583	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	URR1A|DNA|hAT-Charlie	78931.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	17.16	17.05	12.95	11.47	15.86	20.9	14.79	22.11	13.12
Merged-chr7-100527238-1	chr7	100526738	100527738	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-9862.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	1.14	2.3	0.0	1.35	4.67	3.22	4.22	4.86	5.62
Merged-chr8-105499282-2	chr8	105498754	105499754	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-2352.0	NM_175160	70796.0	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik|DHHC-1	zinc finger, DHHC domain containing 1	protein-coding	31.46	34.1	18.5	39.81	41.52	15.27	49.64	46.43	18.74
Merged-chr5-104434992-1	chr5	104434492	104435492	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001204202)	promoter-TSS (NM_001204202)	-119.0	NM_001204201	20750.0	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.57	0.46	4.62	2.7	1.87	0.0	2.11	2.65	1.25
Merged-chr18-67183249-1	chr18	67182749	67183749	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 4 of 11)	intron (NM_177137, intron 4 of 11)	-22110.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	6.86	4.61	16.65	6.75	6.06	8.04	3.17	2.65	0.0
Merged-chr3-122573205-2	chr3	122572705	122573705	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114665, intron 2 of 15)	intron (NM_001114665, intron 2 of 15)	-31524.0	NR_106117	102465764.0		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	25.74	79.25	55.5	31.04	32.66	41.8	91.89	80.92	68.07
Merged-chr8-47693353-1	chr8	47692853	47693853	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18194.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	9.15	8.29	0.92	3.37	5.13	3.22	6.34	0.88	6.87
Merged-chr7-120823447-2	chr7	120822936	120823936	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19395.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	1.14	2.76	1.85	6.07	0.93	1.61	1.06	0.88	2.5
Merged-chr1-72712540-1	chr1	72712040	72713040	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009084, intron 3 of 3)	B1_Mus2|SINE|Alu	1280.0	NM_009084	19981.0	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	17.16	35.02	29.6	27.66	21.93	29.74	26.4	23.43	24.98
Merged-chr19-5811315-1	chr19	5810815	5811815	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8643.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	58.35	33.64	22.2	52.63	46.65	47.42	32.74	29.18	11.87
Merged-chr11-43367988-1	chr11	43367488	43368488	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	6473.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	52.06	49.3	48.1	58.03	38.72	61.89	42.25	26.97	24.98
Merged-chr7-99708852-1	chr7	99708352	99709352	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175316, intron 1 of 13)	intron (NM_175316, intron 1 of 13)	-2010.0	NM_001252530	101488.0	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	6.29	2.76	1.85	3.37	0.93	1.61	1.06	0.88	1.25
Merged-chr13-105214501-1	chr13	105214001	105215001	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	78513.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	19.45	19.81	17.57	12.82	19.59	25.72	19.01	22.55	25.61
Merged-chr11-37144168-1	chr11	37143668	37144668	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-199927.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	4.0	4.61	1.85	2.02	1.4	2.41	2.11	1.77	1.25
Merged-chr2-35416699-1	chr2	35416199	35417199	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 4 of 8)	intron (NM_010283, intron 4 of 8)	-19525.0	NM_001272040	74854.0	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	8.01	2.3	5.55	4.72	3.27	4.82	3.17	1.77	3.12
Merged-chr19-28010058-1	chr19	28009558	28010558	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360357)	promoter-TSS (NM_001360357)	-285.0	NM_001360357	19726.0	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	2.29	3.23	1.85	4.05	1.87	6.43	4.22	1.33	0.0
Merged-chr8-25715424-1	chr8	25714924	25715924	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081269, exon 23 of 23)	3' UTR (NM_001081269, exon 23 of 23)	-4624.0	NR_121642	71910.0	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	4.0	6.45	12.95	6.75	5.6	4.02	8.45	5.31	8.74
Merged-chr1-171762230-1	chr1	171761730	171762730	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4902.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	4.58	2.76	5.55	3.37	3.27	1.61	2.11	1.77	2.5
Merged-chr8-88237507-1	chr8	88237007	88238007	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	(TTTTTG)n|Simple_repeat|Simple_repeat	-34896.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	10.87	13.36	16.65	7.42	6.06	8.84	19.01	12.38	7.49
Merged-chr3-88461677-3	chr3	88461177	88462177	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163489)	promoter-TSS (NM_001163489)	-495.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	10.3	4.15	13.87	9.45	3.27	1.61	2.11	6.63	6.25
Merged-chr11-70815778-1	chr11	70815278	70816278	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR34C_MM|LTR|ERVK	-3217.0	NM_001045526	327957.0	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	13.73	8.75	7.4	14.17	6.53	4.82	4.22	8.4	6.25
Merged-chr7-88429150-1	chr7	88428650	88429650	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-1123.0	NM_028238	72433.0	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	2.86	0.92	0.0	2.02	1.4	4.02	0.0	0.88	3.12
Merged-chr9-65676030-1	chr9	65675530	65676530	+	626.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010952)	promoter-TSS (NM_010952)	-518.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	34.32	30.41	16.65	33.06	27.06	18.49	40.14	42.01	17.49
Merged-chr3-59125773-2	chr3	59125275	59126275	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287119, intron 1 of 2)	intron (NM_001287119, intron 1 of 2)	4987.0	NM_001287124	140795.0	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	9.15	6.45	12.95	4.05	6.06	5.63	12.67	1.77	4.37
Merged-chr9-91364642-1	chr9	91364142	91365142	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009573, exon 1 of 3)	exon (NM_009573, exon 1 of 3)	1157.0	NM_009573	22771.0	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	2.29	0.0	5.55	2.7	1.87	3.22	5.28	0.88	1.25
Merged-chr9-14175252-1	chr9	14174752	14175752	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-101049.0	NM_030261	75747.0	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	10.3	10.6	11.1	7.42	8.4	1.61	10.56	8.4	1.25
Merged-chr3-36571540-1	chr3	36571040	36572040	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009828, intron 2 of 8)	CpG	1498.0	NM_009828	12428.0	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	21.17	13.82	8.32	12.14	6.53	9.65	22.18	13.71	14.99
Merged-chr9-101182176-1	chr9	101181676	101182676	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001161362, intron 4 of 13)	intron (NM_001161362, intron 4 of 13)	16897.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	1.72	3.23	0.0	2.7	1.87	1.61	1.06	3.54	3.75
Merged-chr16-21192772-1	chr16	21192272	21193272	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12023.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	4.0	1.84	0.0	2.02	1.87	6.43	4.22	1.77	1.25
Merged-chr17-42954272-1	chr17	42953772	42954772	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-62283.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	6.29	5.53	1.85	6.75	1.4	5.63	1.06	0.0	1.87
Merged-chr2-14184561-1	chr2	14184061	14185061	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 1 of 3)	intron (NM_001081310, intron 1 of 3)	10037.0	NM_001081310	625286.0	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	5.72	8.75	8.32	5.4	3.27	2.41	4.22	1.77	7.49
Merged-chr10-16994589-1	chr10	16994089	16995089	+	626.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038020, intron 1 of 8)	intron (NR_038020, intron 1 of 8)	101193.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	15.45	23.96	12.95	12.14	9.33	11.25	24.29	16.36	6.87
Merged-chr12-4973144-1	chr12	4972644	4973644	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362349, intron 15 of 27)	intron (NM_001362349, intron 15 of 27)	55791.0	NM_001362349	320817.0	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	1.72	5.07	0.0	3.37	6.06	6.43	3.17	1.33	1.25
Merged-chr3-19258778-1	chr3	19258278	19259278	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122759, intron 2 of 12)	intron (NM_001122759, intron 2 of 12)	6230.0	NM_008802	18583.0	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	5.15	3.69	0.92	5.4	4.2	6.43	6.34	2.65	3.75
Merged-chr5-24051273-1	chr5	24050773	24051773	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20583.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	3.43	4.15	0.0	22.94	18.66	18.49	3.17	1.33	7.49
Merged-chr12-110777283-1	chr12	110776783	110777783	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347428, intron 1 of 2)	B3|SINE|B2	39351.0	NM_001347428	69641.0	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	38.9	35.02	33.3	41.83	44.78	45.82	66.54	40.68	27.48
Merged-chr12-41295962-1	chr12	41295462	41296462	+	626.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	190095.0	NM_001271708	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.86	3.69	4.62	2.7	4.2	6.43	2.11	1.33	0.62
Merged-chr7-141070314-3	chr7	141069860	141070860	+	625.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177897, intron 14 of 19)	CpG	-7869.0	NM_001162924	56460.0	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	5.15	3.69	3.7	2.02	3.27	1.61	2.11	0.0	0.62
Merged-chr6-83690453-2	chr6	83689965	83690965	+	625.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12608.0	NM_144943	246278.0	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	4.58	2.3	1.85	4.05	4.67	0.0	3.17	3.54	1.87
Merged-chr8-123202462-3	chr8	123201947	123202947	+	625.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007876)	TTS (NM_007876)	10341.0	NM_145606	234852.0	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	6.86	3.69	5.55	0.67	0.0	3.22	4.22	0.0	3.75
Merged-chr6-142711297-3	chr6	142710814	142711814	+	625.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9040.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	16.59	16.13	24.05	17.54	13.53	20.9	20.07	13.27	13.12
Merged-chr6-72990368-2	chr6	72989854	72990854	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31606.0	NM_001190327	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	15.45	11.06	11.1	5.4	13.53	12.86	9.51	11.05	12.49
Merged-chr6-72235559-2	chr6	72235109	72236109	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153778)	promoter-TSS (NM_153778)	-32.0	NM_153778	71093.0	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	6.29	1.38	0.0	4.05	2.8	1.61	2.11	2.65	1.87
Merged-chr14-52124127-2	chr14	52123615	52124615	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001168515, intron 6 of 24)	B3|SINE|B2	13212.0	NM_023879	77945.0	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	6.29	2.76	2.77	2.02	1.87	4.82	3.17	0.44	1.25
Merged-chr8-121925817-2	chr8	121925310	121926310	+	625.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 3 of 6)	intron (NM_007608, intron 3 of 6)	17977.0	NM_001033485	407789.0	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	0.0	2.76	0.0	0.67	0.93	1.61	0.0	3.1	2.5
Merged-chr15-102693102-2	chr15	102692588	102693588	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-21222.0	NR_030460	751542.0		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	2.86	4.61	1.85	2.02	2.33	1.61	3.17	3.54	1.25
Merged-chr17-57347937-2	chr17	57347439	57348439	+	625.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10747.0	NM_001355723	13733.0	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	152.74	152.06	66.6	147.76	120.83	96.45	130.97	164.93	98.68
Merged-chr16-3237512-1	chr16	3237012	3238012	+	625.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-354886.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	4.0	2.3	6.47	6.75	3.27	11.25	0.0	2.21	10.62
Merged-chr9-116177457-1	chr9	116176957	116177957	+	625.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2094.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	49.2	35.48	16.65	62.07	50.38	26.53	31.69	37.58	9.37
Merged-chr8-67997018-1	chr8	67996518	67997518	+	625.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-22444.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	6.86	6.45	7.4	6.75	5.13	17.68	9.51	6.63	7.49
Merged-chr13-20049807-3	chr13	20049329	20050329	+	625.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-40678.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.86	1.84	1.85	2.02	4.2	3.22	1.06	0.44	1.25
Merged-chr6-52211742-2	chr6	52211245	52212245	+	625.549988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015611, intron 1 of 2)	CpG	1322.0	NM_010452	15400.0	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	4.58	0.92	1.85	2.02	4.2	5.63	4.22	0.0	3.12
Merged-chr4-45097671-2	chr4	45097161	45098161	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10452.0	NM_001134646	68512.0	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5	protein-coding	2.86	3.23	7.4	1.35	3.27	2.41	1.06	0.88	0.0
Merged-chr9-118653139-2	chr9	118652658	118653658	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 5 of 27)	RSINE1|SINE|B4	46449.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	28.03	30.41	30.52	32.39	18.19	47.42	25.35	26.97	22.48
Merged-chr11-78388821-1	chr11	78388321	78389321	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2213.0	NM_001277290	15218.0	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	5.15	0.92	0.0	5.4	2.33	4.02	2.11	1.77	2.5
Merged-chr18-31766933-2	chr18	31766413	31767413	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153515, intron 2 of 7)	intron (NM_153515, intron 2 of 7)	6297.0	NM_001242430	225339.0	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	4.58	5.07	0.92	8.1	5.6	1.61	0.0	6.19	2.5
Merged-chr2-119189514-2	chr2	119189022	119190022	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139139, intron 1 of 10)	intron (NM_139139, intron 1 of 10)	15013.0	NM_001039223	623781.0	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	-	predicted gene 14137	protein-coding	2.86	3.69	0.0	6.75	6.06	1.61	3.17	3.54	1.87
Merged-chr15-90225381-2	chr15	90224882	90225882	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_106106)	TTS (NR_106106)	1022.0	NR_106106	102466838.0		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	8.58	12.9	11.1	12.82	8.86	8.04	17.96	8.4	8.74
Merged-chr4-55630894-1	chr4	55630394	55631394	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98419.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	16.59	31.79	12.02	33.74	25.19	30.54	25.35	19.46	31.85
Merged-chr12-111894220-1	chr12	111893720	111894720	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011625, intron 1 of 16)	L2c|LINE|L2	13835.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	12.59	8.29	6.47	8.1	7.0	7.23	14.79	8.84	8.74
Merged-chr8-95204108-2	chr8	95203621	95204621	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-61581.0	NM_001145831	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	4.0	0.0	0.92	4.72	0.93	0.0	7.39	0.0	5.0
Merged-chr11-69332204-2	chr11	69331641	69332641	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010599, exon 14 of 14)	exon (NM_010599, exon 14 of 14)	5883.0	NM_010599	16499.0	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	17.16	14.28	7.4	22.94	17.73	38.58	26.4	15.03	22.48
Merged-chr7-80629511-2	chr7	80629003	80630003	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173863, intron 3 of 14)	intron (NM_173863, intron 3 of 14)	-6514.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	11.44	14.75	22.2	14.84	19.59	32.96	32.74	20.78	14.36
Merged-chr2-102897607-1	chr2	102897107	102898107	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	Lx5|LINE|L1	4058.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	12.01	6.45	12.95	15.52	7.0	20.9	17.96	15.03	8.74
Merged-chr3-103374266-2	chr3	103373776	103374776	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	94983.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	2.86	1.38	1.85	1.35	3.73	1.61	1.06	0.88	8.12
Merged-chr10-54131914-1	chr10	54131414	54132414	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	55992.0	NR_038016	100502920.0	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	6.86	8.29	5.55	12.14	2.8	6.43	5.28	6.19	5.0
Merged-chr8-25080439-2	chr8	25079961	25080961	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 2 of 11)	ORR1D1-int|LTR|ERVL-MaLR	21350.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	16.02	15.21	16.65	18.22	9.8	16.08	11.62	15.92	19.98
Merged-chr2-129502847-1	chr2	129502347	129503347	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177653, intron 1 of 6)	RLTR18-int|LTR|ERVK	33755.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	20.02	28.57	18.5	12.82	7.93	9.65	22.18	16.36	8.12
Merged-chr7-141911497-1	chr7	141910997	141911997	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9036.0	NM_001347562	54473.0	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	3.43	2.76	5.55	2.7	2.8	4.82	7.39	2.21	0.0
Merged-chr4-117189553-2	chr4	117189038	117190038	+	625.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-6914.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	267.15	294.44	80.47	183.52	255.65	131.82	247.15	332.07	121.16
Merged-chr11-21999718-2	chr11	21999208	22000208	+	625.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011023, intron 2 of 4)	intron (NM_011023, intron 2 of 4)	1943.0	NM_011023	18423.0	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.0	5.99	3.7	2.7	0.93	0.0	0.0	2.21	3.75
Merged-chr7-19813745-3	chr7	19813256	19814256	+	625.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	8999.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	20.02	8.75	7.4	11.47	7.46	6.43	10.56	12.38	2.5
Merged-chr11-98975474-1	chr11	98974974	98975974	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177303)	TTS (NM_001177303)	7542.0	NM_178596	353155.0	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	1.72	2.3	5.55	7.42	1.4	3.22	1.06	1.77	6.25
Merged-chr11-26581709-1	chr11	26581209	26582209	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	12211.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	8.01	4.61	5.55	8.77	7.0	6.43	10.56	11.94	3.75
Merged-chr14-45644278-1	chr14	45643778	45644778	+	625.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176845, intron 1 of 12)	intron (NM_176845, intron 1 of 12)	13775.0	NR_039593	100628600.0		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	4.0	5.53	7.4	5.4	4.67	4.02	29.57	21.22	15.61
Merged-chr3-8983308-1	chr3	8982808	8983808	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	-19162.0	NM_001025261	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	354.1	317.94	260.84	355.58	309.3	242.74	389.73	460.74	227.33
Merged-chr1-153790852-1	chr1	153790352	153791352	+	625.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 17 of 20)	intron (NM_001243223, intron 17 of 20)	41426.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	5.15	5.07	5.55	3.37	1.4	1.61	10.56	1.33	5.62
Merged-chr5-88518301-3	chr5	88517809	88518809	+	625.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	9588.0	NM_152839	16069.0	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	13.73	8.75	26.82	5.4	7.46	11.25	7.39	7.52	9.99
Merged-chr5-114924763-2	chr5	114924222	114925222	+	625.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359946, intron 1 of 4)	B4|SINE|B4	1482.0	NM_001359945	231655.0	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	78.37	64.97	54.57	129.55	96.57	97.26	184.83	164.93	61.83
Merged-chr10-75516634-2	chr10	75516115	75517115	+	625.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347201, intron 1 of 5)	intron (NM_001347201, intron 1 of 5)	766.0	NM_175133	68778.0	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	135.58	137.31	118.39	135.62	132.49	132.63	200.68	182.17	71.82
Merged-chr19-32949512-2	chr19	32949049	32950049	+	625.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	191972.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	10.87	47.92	25.9	20.24	18.19	17.68	24.29	24.76	31.85
Merged-chr8-94703004-3	chr8	94702490	94703490	+	625.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6748.0	NM_026385	67801.0	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	6.29	11.52	3.7	6.75	11.66	13.66	10.56	9.73	6.87
Merged-chr13-24616770-2	chr13	24616256	24617256	+	625.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	2150.0	NM_178658	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	6.29	3.69	5.55	9.45	3.27	3.22	6.34	7.52	2.5
Merged-chr6-137577155-2	chr6	137576559	137577559	+	625.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	-6050.0	NM_001271587	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	18.88	17.05	7.4	10.12	5.13	9.65	8.45	5.31	7.49
Merged-chr8-70607576-2	chr8	70607073	70608073	+	625.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	741.0	NM_133772	76900.0	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	86.95	53.45	25.9	72.19	41.52	34.56	116.18	93.74	41.22
Merged-chr2-83771646-1	chr2	83771146	83772146	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 12 of 29)	intron (NM_008402, intron 12 of 29)	-41082.0	NM_175514	241520.0	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	6.86	5.53	1.85	3.37	4.67	0.0	2.11	6.19	15.61
Merged-chr9-16319171-2	chr9	16318680	16319680	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	59051.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	8.01	5.53	4.62	4.05	3.27	3.22	4.22	7.96	5.62
Merged-chr18-56874715-3	chr18	56874202	56875202	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	50846.0	NM_177115	320253.0	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	21.17	20.74	13.87	6.07	4.67	19.29	6.34	11.5	5.0
Merged-chr7-81548930-1	chr7	81548430	81549430	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172904, exon 7 of 13)	exon (NM_172904, exon 7 of 13)	18051.0	NM_172904	244091.0	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	2.29	3.23	1.85	5.4	3.73	3.22	21.12	21.22	13.74
Merged-chr8-125518015-1	chr8	125517515	125518515	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-25182.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	20.02	9.22	5.55	9.45	14.0	14.47	16.9	10.17	6.87
Merged-chr4-129671664-2	chr4	129671179	129672179	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008468, intron 1 of 13)	intron (NM_008468, intron 1 of 13)	1088.0	NM_008468	16650.0	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	81.8	91.24	52.72	91.09	112.9	75.56	100.34	99.49	43.09
Merged-chr2-5705043-1	chr2	5704543	5705543	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	9719.0	NM_001290374	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	22.31	23.5	32.37	32.39	26.12	35.37	29.57	35.37	37.47
Merged-chr11-70500418-1	chr11	70499918	70500918	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4856.0	NM_029360	75604.0	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	106.4	95.38	58.27	135.62	123.16	89.22	103.51	117.62	50.59
Merged-chr2-3660127-1	chr2	3659627	3660627	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53331.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	17.16	24.42	22.2	22.27	16.33	24.92	11.62	26.09	24.36
Merged-chr14-55757755-1	chr14	55757255	55758255	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009894, intron 2 of 4)	intron (NM_009894, intron 2 of 4)	669.0	NM_009894	12684.0	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	18.88	11.98	12.95	15.52	11.2	8.84	26.4	10.61	11.87
Merged-chr13-44540643-1	chr13	44540143	44541143	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100916.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	3.43	3.23	0.0	7.42	4.2	4.02	10.56	3.98	2.5
Merged-chrX-77509993-1	chrX	77509493	77510493	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1234.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	41.19	45.62	16.65	30.36	27.06	35.37	51.75	61.46	23.11
Merged-chr10-96622912-1	chr10	96622412	96623412	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_007569)	TTS (NM_007569)	5911.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	13.73	12.9	24.97	20.92	11.66	14.47	12.67	16.8	7.49
Merged-chr7-45798560-1	chr7	45798060	45799060	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290990, exon 12 of 15)	exon (NM_001290990, exon 12 of 15)	13180.0	NM_001290990	381983.0	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	2.86	3.69	5.55	3.37	1.4	0.8	1.06	0.88	0.62
Merged-chr8-117407672-1	chr8	117407172	117408172	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-45351.0	NR_106045	102466801.0		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	7.44	5.53	9.25	8.1	8.4	5.63	5.28	8.84	1.87
Merged-chr2-181436518-1	chr2	181436018	181437018	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028125, intron 1 of 2)	intron (NM_028125, intron 1 of 2)	-12130.0	NM_027656	72147.0	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	3.43	2.3	0.0	2.7	1.87	1.61	7.39	1.77	2.5
Merged-chr3-30843216-1	chr3	30842716	30843716	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-12734.0	NM_001134386	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	9.15	9.22	3.7	8.1	9.33	5.63	10.56	8.4	1.25
Merged-chr14-9694956-1	chr14	9694456	9695456	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	intron (NM_001360141, intron 8 of 9)	-189139.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.29	4.61	12.95	4.05	4.2	7.23	2.11	3.1	2.5
Merged-chr6-15860202-1	chr6	15859702	15860702	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	139541.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	3.43	8.75	2.77	4.05	2.8	4.02	4.22	9.29	6.25
Merged-chr8-60891567-1	chr8	60891067	60892067	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151662, intron 1 of 2)	intron (NR_151662, intron 1 of 2)	1174.0	NM_001357270	72612.0	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	5.72	7.83	3.7	4.05	8.86	10.45	5.28	4.86	0.62
Merged-chr11-94994375-1	chr11	94993875	94994875	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172261, intron 1 of 9)	intron (NM_172261, intron 1 of 9)	3163.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	109.83	98.61	54.57	29.69	29.39	36.97	27.46	36.7	23.11
Merged-chr7-126772881-1	chr7	126772381	126773381	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024228, intron 9 of 9)	intron (NM_024228, intron 9 of 9)	-4094.0	NM_026875	66090.0	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee like 3	protein-coding	2.29	1.84	1.85	64.1	52.25	113.33	0.0	1.77	1.25
Merged-chr4-137951869-1	chr4	137951369	137952369	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199307, intron 15 of 19)	intron (NM_199307, intron 15 of 19)	-41587.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	10.87	7.37	5.55	8.77	12.6	9.65	8.45	8.84	12.49
Merged-chr5-3968577-1	chr5	3968077	3969077	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194462, intron 7 of 47)	intron (NM_194462, intron 7 of 47)	40391.0	NM_194462	100986.0	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	6.86	4.61	11.1	2.7	5.13	8.84	2.11	4.42	5.0
Merged-chr11-78189221-1	chr11	78188721	78189721	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_033475, exon 1 of 10)	5' UTR (NM_033475, exon 1 of 10)	473.0	NM_033475	19376.0	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	34.9	12.9	3.7	30.36	22.39	14.47	41.19	11.94	5.62
Merged-chr4-58546829-1	chr4	58546329	58547329	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	intron (NM_010336, intron 1 of 3)	6464.0	NM_172989	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	13.16	10.14	13.87	8.77	7.46	8.84	41.19	33.6	28.1
Merged-chrX-74253805-1	chrX	74253305	74254305	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007927)	promoter-TSS (NM_007927)	-882.0	NM_007927	13726.0	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	10.87	5.99	14.8	8.77	5.13	9.65	12.67	12.38	14.99
Merged-chr9-90226043-1	chr9	90225543	90226543	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_194334, exon 6 of 13)	exon (NM_194334, exon 6 of 13)	44726.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	109.26	120.73	70.3	127.52	101.23	105.3	88.72	88.43	53.71
Merged-chr10-85957043-1	chr10	85956543	85957543	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145422, intron 1 of 11)	intron (NM_145422, intron 1 of 11)	750.0	NM_145422	28088.0	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	67.5	68.2	32.37	62.75	76.04	68.32	66.54	65.88	39.35
Merged-chr3-116186621-2	chr3	116186124	116187124	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-56936.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	25.17	12.9	13.87	22.27	16.33	8.84	19.01	7.07	5.0
Merged-chr10-34152093-1	chr10	34151593	34152593	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172508, exon 6 of 6)	3' UTR (NM_172508, exon 6 of 6)	-24121.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	5.72	8.75	8.32	2.02	5.6	8.04	5.28	7.07	8.74
Merged-chr5-143820833-1	chr5	143820333	143821333	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51029.0	NM_013557	15467.0	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	17.16	15.67	9.25	14.84	13.53	16.88	19.01	11.05	9.99
Merged-chr5-100572268-1	chr5	100571768	100572768	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_139198)	promoter-TSS (NM_139198)	-63.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	18.31	23.5	20.35	10.12	4.2	5.63	73.93	67.65	28.1
Merged-chr8-8499524-1	chr8	8499024	8500024	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	161249.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.0	0.46	4.62	1.35	2.8	3.22	1.06	0.88	5.0
Merged-chr1-53876834-1	chr1	53876334	53877334	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	27410.0	NR_106149	102465783.0		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	47.48	52.53	42.55	66.12	70.44	61.89	47.53	53.5	32.48
Merged-chr1-156465306-1	chr1	156464806	156465806	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	9022.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	28.03	33.18	18.5	43.18	28.92	33.76	10.56	12.82	14.99
Merged-chr4-102583522-1	chr4	102583022	102584022	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	-4036.0	NM_001177982	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	15.45	22.12	31.45	4.72	17.26	31.35	27.46	12.38	21.23
Merged-chr16-92445595-2	chr16	92445113	92446113	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	B3A|SINE|B2	20556.0	NM_001081549	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	9.15	2.76	0.0	6.75	2.33	6.43	7.39	0.44	1.25
Merged-chr13-88730374-1	chr13	88729874	88730874	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-91098.0	NM_010103	13612.0	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1|Sox2-cre|Sox2Cre|Tg(Sox2-cre)1Amc	EGF-like repeats and discoidin I-like domains 3	protein-coding	6.29	14.28	16.65	3.37	5.13	1.61	13.73	9.29	12.49
Merged-chr7-88290774-1	chr7	88290274	88291274	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001311790, exon 4 of 4)	3' UTR (NM_001311790, exon 4 of 4)	12689.0	NM_001311790	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	12.59	15.67	29.6	24.96	15.86	18.49	23.24	18.13	34.35
Merged-chr12-54192177-1	chr12	54191677	54192677	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	11697.0	NM_028133	112407.0	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	6.29	3.23	4.62	0.67	3.73	1.61	1.06	3.54	6.87
Merged-chr14-47165306-1	chr14	47164806	47165806	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008102, intron 3 of 5)	intron (NM_008102, intron 3 of 5)	24107.0	NM_008102	14528.0	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTP-CH-I|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	11.44	5.53	0.0	15.52	11.2	7.23	7.39	2.21	5.0
Merged-chr11-119729521-1	chr11	119729021	119730021	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028898, intron 4 of 33)	intron (NM_028898, intron 4 of 33)	104844.0	NR_045313	319454.0	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	13.16	9.22	29.6	20.24	20.53	19.29	8.45	15.03	11.24
Merged-chr7-102553481-1	chr7	102552981	102553981	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_147101)	promoter-TSS (NM_147101)	-805.0	NM_147101	259105.0	Mm.424092	NM_147101	ENSMUSG00000073977	Olfr549	MOR31-3	olfactory receptor 549	protein-coding	10.3	7.83	4.62	12.82	6.53	16.08	5.28	7.07	13.74
Merged-chr6-37355070-1	chr6	37354570	37355570	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178661, intron 6 of 11)	MIR3|SINE|MIR	-55094.0	NM_001347104	320127.0	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	6430604M11Rik|C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.0	5.07	6.47	8.1	5.13	1.61	6.34	8.84	5.0
Merged-chr2-59162360-1	chr2	59161860	59162860	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	1510.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	81.23	87.55	69.37	85.69	81.17	81.18	80.27	122.92	42.47
Merged-chr2-38646177-1	chr2	38645677	38646677	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2271.0	NM_011187	19177.0	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	4.58	1.38	0.0	2.7	2.8	3.22	2.11	1.77	6.25
Merged-chr9-109862707-1	chr9	109862207	109863207	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12872.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	5.15	2.3	1.85	3.37	3.27	0.0	2.11	1.77	0.0
Merged-chr10-78295190-2	chr10	78294703	78295703	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053014, intron 2 of 9)	intron (NM_053014, intron 2 of 9)	45004.0	NR_106119	102465765.0		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	36.04	18.43	49.95	37.11	23.79	39.39	27.46	21.22	20.61
Merged-chr4-32366371-1	chr4	32365871	32366871	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-51064.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	6.29	4.15	3.7	5.4	1.4	4.02	0.0	5.31	1.25
Merged-chr11-21237292-1	chr11	21236792	21237792	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1740.0	NM_139061	245944.0	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	34.9	48.38	44.4	37.11	32.19	37.78	52.81	70.75	38.1
Merged-chr7-4148474-1	chr7	4147974	4148974	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172736)	TTS (NM_172736)	1398.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	92.67	121.19	99.89	92.44	71.38	99.67	87.66	87.55	101.17
Merged-chr6-48429106-1	chr6	48428606	48429606	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	15984.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	6.86	9.22	7.4	8.1	8.4	17.68	6.34	1.33	3.75
Merged-chr2-126594094-1	chr2	126593594	126594594	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008230, exon 12 of 12)	exon (NM_008230, exon 12 of 12)	24584.0	NM_008230	15186.0	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	6.86	2.76	0.0	4.05	2.8	3.22	5.28	4.86	0.0
Merged-chr5-75028414-1	chr5	75027914	75028914	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028850, intron 1 of 5)	intron (NM_028850, intron 1 of 5)	16227.0	NM_028850	74277.0	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	5.15	8.29	11.1	10.12	6.53	3.22	9.51	4.42	1.25
Merged-chr16-36940900-1	chr16	36940400	36941400	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008225, intron 3 of 13)	intron (NM_008225, intron 3 of 13)	5917.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	121.28	134.55	73.07	95.81	63.91	135.84	188.0	188.36	78.07
Merged-chr5-73633312-1	chr5	73632812	73633812	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153568)	promoter-TSS (NM_153568)	-891.0	NM_153568	231296.0	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	4.0	2.76	5.55	2.7	1.87	6.43	3.17	3.1	0.62
Merged-chr12-32799815-1	chr12	32799315	32800315	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-20520.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	8.58	4.61	0.0	3.37	6.06	5.63	7.39	1.77	5.0
Merged-chr10-19167871-1	chr10	19167371	19168371	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038022, intron 1 of 1)	intron (NR_038022, intron 1 of 1)	633.0	NR_038022	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	8.58	11.52	3.7	10.12	11.2	13.66	7.39	5.31	0.0
Merged-chr5-86887843-1	chr5	86887343	86888343	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	19094.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	1.72	2.3	0.0	0.67	3.73	0.0	0.0	1.33	1.25
Merged-chr10-59221011-1	chr10	59220511	59221511	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172939)	promoter-TSS (NM_172939)	836.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	121.28	123.49	81.4	132.24	119.89	106.9	137.3	168.91	52.46
Merged-chr6-47836216-1	chr6	47835716	47836716	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173034, intron 1 of 4)	CpG	555.0	NM_173034	272347.0	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	150.45	131.32	110.99	80.97	132.02	108.51	98.23	76.05	46.84
Merged-chr5-140510755-1	chr5	140510255	140511255	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021528, intron 1 of 1)	intron (NM_021528, intron 1 of 1)	5146.0	NM_021528	59031.0	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	4.0	4.61	5.55	8.77	3.73	8.04	2.11	1.77	3.12
Merged-chr2-174043730-1	chr2	174043230	174044230	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-33321.0	NM_172675	228960.0	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	13.73	6.45	11.1	6.07	4.67	12.06	20.07	4.86	5.0
Merged-chr7-75456127-1	chr7	75455627	75456627	+	625.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	CpG	593.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	43.48	34.56	17.57	38.46	27.06	28.94	30.63	17.69	20.61
Merged-chr15-51585965-1	chr15	51585465	51586465	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-190355.0	NR_045092	100502643.0	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	1.14	3.23	0.0	0.0	2.33	4.82	1.06	0.88	3.75
Merged-chr1-82840057-1	chr1	82839557	82840557	+	625.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310713, intron 1 of 11)	CpG	597.0	NM_001347077	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	105.83	49.76	66.6	107.95	47.58	73.14	110.9	38.91	36.22
Merged-chr6-72142770-1	chr6	72142270	72143270	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-19573.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	25.17	20.27	40.7	27.66	15.86	20.9	22.18	22.11	23.11
Merged-chr12-112917732-1	chr12	112917232	112918232	+	625.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010588, intron 5 of 25)	intron (NM_010588, intron 5 of 25)	2809.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	5.72	1.84	0.0	12.14	4.67	1.61	3.17	0.88	3.75
Merged-chr10-118862917-2	chr10	118862419	118863419	+	624.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	5984.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	36.04	47.46	27.75	55.33	49.45	49.83	39.08	37.14	39.35
Merged-chr13-58034709-3	chr13	58034211	58035211	+	624.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-11511.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	16.59	11.06	3.7	18.22	8.4	8.84	8.45	2.65	3.12
Merged-chr9-58274077-2	chr9	58273729	58274729	+	624.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	21065.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	76.08	102.29	61.05	82.99	45.25	72.34	136.25	152.55	93.05
Merged-chr18-11839970-1	chr18	11839470	11840470	+	624.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045421)	promoter-TSS (NR_045421)	468.0	NR_035447	100316686.0		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	59.49	37.32	54.57	79.62	59.25	79.58	50.7	35.82	24.36
Merged-chr7-66225169-1	chr7	66224669	66225669	+	624.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	115654.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	9.15	5.99	3.7	2.7	3.73	1.61	3.17	6.19	1.25
Merged-chr3-9334392-1	chr3	9333892	9334892	+	624.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68686.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	4.58	5.99	5.55	9.45	4.67	3.22	2.11	2.21	3.12
Merged-chr7-92740695-2	chr7	92740218	92741218	+	624.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029494)	promoter-TSS (NM_029494)	741.0	NR_015510	666737.0	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	159.03	189.38	82.32	138.32	181.01	90.02	166.88	160.06	78.07
Merged-chr8-25089741-2	chr8	25089235	25090235	+	624.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	12076.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	53.77	43.31	69.37	45.88	21.93	35.37	53.87	31.84	26.23
Merged-chr10-115252508-3	chr10	115251955	115252955	+	624.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025706)	promoter-TSS (NM_025706)	-962.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	10.87	7.37	9.25	12.82	12.6	17.68	8.45	8.84	2.5
Merged-chrX-12873436-1	chrX	12872936	12873936	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-63437.0	NM_001272033	245350.0	Mm.302695	NM_001272033		AA414768	-	expressed sequence AA414768	protein-coding	4.0	5.53	0.0	4.05	5.6	8.04	8.45	1.33	5.0
Merged-chr1-7077969-1	chr1	7077469	7078469	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-10951.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.01	8.29	3.7	10.12	7.93	4.82	15.84	9.29	3.75
Merged-chr2-129600044-2	chr2	129599541	129600541	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	4579.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	40.04	52.53	49.02	60.72	27.99	57.07	53.87	41.12	49.96
Merged-chr7-98311602-1	chr7	98311102	98312102	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	B4|SINE|B4	-2060.0	NM_025408	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	52.06	41.01	35.15	31.04	27.06	28.94	28.52	19.9	26.23
Merged-chr11-69124663-2	chr11	69124169	69125169	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	tRNA-Gln-CAG|tRNA|tRNA	-1708.0	NM_011786	23801.0	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	26.31	37.78	19.42	32.39	30.32	33.76	36.97	48.2	38.1
Merged-chr17-8883227-2	chr17	8882726	8883726	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 1 of 21)	intron (NM_001347321, intron 1 of 21)	33241.0	NM_001347321	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	5.72	5.07	6.47	11.47	9.8	8.04	6.34	7.96	7.49
Merged-chr9-123991717-1	chr9	123991217	123992217	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13309.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	28.03	36.4	59.2	35.76	27.52	40.99	25.35	27.41	35.6
Merged-chr19-56459528-1	chr19	56459028	56460028	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-2109.0	NM_001164263	226245.0	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	17.73	28.11	37.92	19.57	20.53	20.9	27.46	25.65	23.11
Merged-chr5-29230678-2	chr5	29230191	29231191	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_020295, exon 17 of 17)	3' UTR (NM_020295, exon 17 of 17)	34698.0	NR_110371	56874.0	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	4.0	5.99	3.7	10.12	2.8	1.61	5.28	6.19	2.5
Merged-chr13-99152465-1	chr13	99151965	99152965	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32358.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.43	2.3	1.85	2.7	0.47	4.82	4.22	0.88	5.0
Merged-chr15-102395210-2	chr15	102394727	102395727	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11089.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	51.48	42.39	37.0	47.23	27.52	34.56	20.07	21.67	27.48
Merged-chr15-84631746-1	chr15	84631246	84632246	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31460.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	1.72	1.38	0.0	5.4	3.27	3.22	0.0	3.98	3.75
Merged-chr7-119868284-1	chr7	119867784	119868784	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163703, intron 1 of 2)	intron (NM_001163703, intron 1 of 2)	27174.0	NM_173408	233805.0	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	7.44	2.3	13.87	3.37	2.33	1.61	8.45	3.1	1.25
Merged-chr7-43276341-1	chr7	43275841	43276841	+	624.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR31M|LTR|ERVK	36959.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	4.58	7.83	0.0	1.35	1.87	1.61	4.22	0.88	1.25
Merged-chr1-191131493-2	chr1	191130991	191131991	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33077.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	21.17	16.59	32.37	16.19	10.26	22.51	13.73	7.96	11.24
Merged-chr6-86694671-1	chr6	86694171	86695171	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011818, intron 13 of 13)	intron (NM_011818, intron 13 of 13)	-10180.0	NM_025665	66618.0	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	2.29	1.38	7.4	2.7	2.8	0.8	1.06	0.44	2.5
Merged-chr1-149843579-2	chr1	149843081	149844081	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008869, intron 15 of 17)	MTD|LTR|ERVL-MaLR	78858.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	20.02	18.89	8.32	12.82	5.6	14.47	20.07	19.46	18.11
Merged-chr10-117335789-2	chr10	117335287	117336287	+	624.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4-int|LTR|ERVK	41186.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	3.43	3.69	1.85	3.37	2.8	1.61	1.06	2.21	3.75
Merged-chr13-74000738-1	chr13	74000238	74001238	+	624.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8681.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	8.58	2.76	7.4	6.75	2.8	4.82	4.22	3.1	3.75
Merged-chr14-122079635-3	chr14	122079153	122080153	+	624.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	27321.0	NR_015586	319727.0	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	4.58	1.38	0.92	4.05	2.33	1.61	3.17	2.21	3.75
Merged-chr7-101321493-3	chr7	101320987	101321987	+	624.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019990, intron 1 of 6)	CpG	374.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	10.87	4.61	3.7	8.1	5.13	6.43	14.79	7.52	3.75
Merged-chr11-100736236-3	chr11	100735714	100736714	+	624.377747	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	2001.0	NM_024456	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	71.51	78.79	86.02	58.7	63.45	99.67	117.24	114.52	72.45
Merged-chr2-144214683-3	chr2	144214212	144215212	+	624.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25422.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	109.26	72.8	63.82	125.5	63.45	53.85	119.35	113.64	49.96
Merged-chr7-101302772-2	chr7	101302264	101303264	+	624.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001111111)	promoter-TSS (NM_001111111)	-676.0	NR_152152	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	86.95	63.59	35.15	77.59	49.92	50.64	65.48	68.98	24.98
Merged-chr1-176825915-3	chr1	176825408	176826408	+	624.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 2 of 18)	intron (NM_001357390, intron 2 of 18)	10225.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	60.64	77.41	43.47	93.79	85.84	69.93	106.67	125.58	68.7
Merged-chr19-61151820-1	chr19	61151320	61152320	+	624.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10980.0	NR_131954	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	1.14	1.38	0.0	4.72	3.73	1.61	2.11	1.77	8.12
Merged-chr10-17294593-2	chr10	17294091	17295091	+	624.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198809.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.0	5.53	1.85	5.4	5.6	1.61	7.39	0.88	6.25
Merged-chr14-75064767-2	chr14	75064265	75065265	+	624.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	48738.0	NM_198642	271221.0	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	16.02	13.36	23.12	20.92	17.73	16.08	11.62	17.24	20.61
Merged-chr2-32502063-3	chr2	32501571	32502571	+	624.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33288.0	NM_153560	98952.0	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	22.31	16.13	11.1	19.57	14.93	20.9	28.52	26.53	10.62
Merged-chr17-34619192-3	chr17	34618717	34619717	+	624.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302395, intron 7 of 8)	intron (NM_001302395, intron 7 of 8)	-3246.0	NM_152922	81701.0	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	12.59	6.45	0.0	3.37	6.06	0.0	3.17	2.65	12.49
Merged-chr14-26502852-3	chr14	26502350	26503350	+	624.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	L1_Mur2|LINE|L1	31774.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	18.88	19.35	29.6	22.27	9.8	20.9	9.51	12.82	23.73
Merged-chrX-56454408-1	chrX	56453908	56454908	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172779)	promoter-TSS (NM_172779)	-431.0	NM_172779	236790.0	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	32.61	35.94	27.75	34.41	20.53	36.97	45.42	35.37	21.23
Merged-chr4-86925258-1	chr4	86924758	86925758	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290543, intron 5 of 5)	intron (NM_001290543, intron 5 of 5)	50844.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	1.72	2.3	5.55	6.07	0.0	3.22	3.17	0.44	2.5
Merged-chr12-73587555-1	chr12	73587055	73588055	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 1 of 13)	intron (NM_008856, intron 1 of 13)	2759.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	12.59	7.83	12.02	20.24	9.8	11.25	13.73	5.31	10.62
Merged-chr17-78733656-1	chr17	78733156	78734156	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011500, intron 1 of 17)	intron (NM_011500, intron 1 of 17)	2904.0	NM_011500	268980.0	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	10.3	3.23	9.25	9.45	3.27	4.82	2.11	7.96	7.49
Merged-chr4-31936769-1	chr4	31936269	31937269	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27338.0	NM_009316	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	6.29	1.84	1.85	4.72	3.27	3.22	2.11	3.1	3.75
Merged-chr17-53990060-1	chr17	53989560	53990560	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018751, intron 1 of 7)	intron (NM_018751, intron 1 of 7)	571.0	NM_018751	20888.0	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	6.86	2.3	7.4	2.02	5.13	1.61	5.28	0.44	3.75
Merged-chr16-24778542-2	chr16	24778041	24779041	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	56686.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	9.72	6.45	3.7	12.14	7.0	6.43	8.45	8.4	9.99
Merged-chr8-13965088-1	chr8	13964588	13965588	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361630, intron 2 of 3)	intron (NM_001361630, intron 2 of 3)	9689.0	NM_173744	72148.0	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	7.44	4.61	6.47	7.42	3.73	11.25	5.28	3.54	6.25
Merged-chr13-98968183-1	chr13	98967683	98968683	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16382.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	1.72	2.3	2.77	3.37	2.33	2.41	3.17	5.75	5.0
Merged-chr12-8494319-1	chr12	8493819	8494819	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	5690.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	9.15	10.6	11.1	5.4	3.73	11.25	10.56	4.86	6.87
Merged-chr8-64945865-1	chr8	64945365	64946365	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1320.0	NM_001163747	73067.0	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	13.73	23.5	7.4	20.24	9.33	16.08	27.46	13.71	12.49
Merged-chr8-84650202-1	chr8	84649702	84650702	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12650.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.15	3.23	9.25	4.72	3.27	9.65	4.22	0.44	2.5
Merged-chr18-34007370-1	chr18	34006870	34007870	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013512)	promoter-TSS (NM_013512)	-164.0	NM_013512	13824.0	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	2.86	4.15	3.7	3.37	2.33	2.41	1.06	1.33	1.25
Merged-chr9-105479972-1	chr9	105479472	105480472	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253831, intron 1 of 26)	L1M3|LINE|L1	15161.0	NM_175025	235574.0	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	4.58	9.68	20.35	8.1	3.73	4.02	3.17	1.77	4.37
Merged-chr13-20493888-2	chr13	20493381	20494381	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198093, intron 1 of 6)	intron (NM_198093, intron 1 of 6)	20891.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	19.45	17.05	7.4	12.82	12.13	15.27	8.45	9.29	13.74
Merged-chr1-164316888-1	chr1	164316388	164317388	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178071, intron 3 of 9)	intron (NM_178071, intron 3 of 9)	9216.0	NM_138314	171567.0	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	3.43	3.69	0.0	3.37	1.87	0.0	1.06	0.88	5.0
Merged-chr13-94977506-1	chr13	94977006	94978006	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172590, intron 1 of 12)	intron (NM_172590, intron 1 of 12)	1162.0	NM_172590	218460.0	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	26.31	40.09	20.35	34.41	27.06	16.88	49.64	44.22	12.49
Merged-chr7-67305155-1	chr7	67304655	67305655	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 3 of 11)	B4A|SINE|B4	67703.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	10.87	13.36	18.5	6.07	8.86	13.66	4.22	4.86	12.49
Merged-chr17-35381792-1	chr17	35381292	35382292	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	2175.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	9.15	2.3	3.7	7.42	2.33	0.0	1.06	6.19	3.75
Merged-chr5-125340082-2	chr5	125339549	125340549	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	1045.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	124.14	163.12	157.24	141.02	186.6	172.81	217.57	268.84	121.78
Merged-chr5-21384317-1	chr5	21383817	21384817	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029195, intron 2 of 18)	intron (NM_029195, intron 2 of 18)	11644.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	28.03	20.27	32.37	25.64	11.2	44.21	43.3	28.3	16.86
Merged-chr14-16364230-1	chr14	16363730	16364730	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009409)	promoter-TSS (NM_009409)	-976.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	70.93	61.75	68.45	65.45	61.58	68.32	49.64	55.27	26.85
Merged-chr6-72095401-1	chr6	72094901	72095901	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2207.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	23.45	15.67	3.7	29.01	8.86	6.43	12.67	10.61	6.25
Merged-chr8-10170099-1	chr8	10169599	10170599	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001319151, intron 1 of 34)	intron (NM_001319151, intron 1 of 34)	16188.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	3.43	2.76	12.02	2.02	2.8	4.02	3.17	4.42	5.62
Merged-chr10-12699139-1	chr10	12698639	12699639	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011682, intron 22 of 73)	intron (NM_011682, intron 22 of 73)	162596.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	14.3	5.07	7.4	7.42	5.13	8.04	22.18	19.01	6.87
Merged-chr5-129594266-1	chr5	129593766	129594766	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011846, intron 1 of 9)	intron (NM_011846, intron 1 of 9)	10097.0	NM_011846	23948.0	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	2.29	0.92	0.0	3.37	0.47	0.0	4.22	2.65	3.75
Merged-chr2-158340378-1	chr2	158339878	158340878	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21131.0	NR_015463	68108.0	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	2.86	0.92	0.0	0.67	1.4	3.22	3.17	0.0	3.75
Merged-chrX-142527109-1	chrX	142526609	142527609	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-136574.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	7.44	6.45	0.0	8.1	5.6	1.61	8.45	4.42	16.24
Merged-chr10-95291790-1	chr10	95291290	95292290	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	31919.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	71.51	65.89	27.75	68.15	54.11	69.93	67.6	73.4	54.33
Merged-chrX-155163754-1	chrX	155163254	155164254	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15905.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	10.87	17.97	7.4	13.49	14.46	17.68	14.79	19.9	18.74
Merged-chr13-69431240-1	chr13	69430740	69431740	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER45A|DNA|hAT-Tip100	102624.0	NM_198600	210106.0	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.57	0.92	0.0	0.67	0.0	0.0	17.96	11.05	14.99
Merged-chr11-98414250-1	chr11	98413750	98414750	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003817, intron 1 of 26)	intron (NM_001003817, intron 1 of 26)	1766.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	7.44	5.99	12.02	9.45	6.06	4.82	4.22	0.44	2.5
Merged-chrX-142229021-1	chrX	142228521	142229521	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290533, intron 1 of 3)	intron (NM_001290533, intron 1 of 3)	318.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	20.02	10.14	12.95	17.54	9.8	4.82	32.74	22.99	13.74
Merged-chr2-9877464-1	chr2	9876964	9877964	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008091, exon 2 of 6)	exon (NM_008091, exon 2 of 6)	1136.0	NM_001355110	14462.0	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	1.72	0.92	1.85	4.05	0.93	0.0	4.22	2.65	1.25
Merged-chr9-32542471-1	chr9	32541971	32542971	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1019.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	21.17	13.36	16.65	25.64	10.26	12.06	25.35	13.71	7.49
Merged-chr17-57029841-2	chr17	57029325	57030325	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	1682.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	9.72	14.75	14.8	3.37	3.73	4.82	17.96	9.73	3.75
Merged-chr3-84946570-1	chr3	84946070	84947070	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-5641.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	4.58	2.3	1.85	4.05	2.8	1.61	4.22	4.42	2.5
Merged-chr2-162922312-1	chr2	162921812	162922812	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9196.0	NM_026499	67996.0	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	2.29	4.61	0.0	2.7	2.33	3.22	5.28	2.65	5.0
Merged-chr18-36196690-1	chr18	36196190	36197190	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001167891, exon 1 of 10)	exon (NM_001167891, exon 1 of 10)	470.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	7.44	2.3	3.7	5.4	1.4	1.61	3.17	1.33	1.87
Merged-chr2-3659662-1	chr2	3659162	3660162	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53796.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	25.17	24.42	45.32	29.69	15.39	36.17	15.84	28.74	32.48
Merged-chr2-129544808-1	chr2	129544308	129545308	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8206.0	NM_177653	228592.0	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	22.31	9.22	5.55	35.76	16.79	19.29	11.62	9.73	8.12
Merged-chr4-132586388-1	chr4	132585888	132586888	+	624.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	22321.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.43	6.91	3.7	5.4	0.47	6.43	4.22	1.77	2.5
Merged-chr2-22928429-2	chr2	22927935	22928935	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149721, intron 7 of 10)	intron (NR_149721, intron 7 of 10)	32913.0	NM_001355467	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.0	7.37	9.25	6.75	5.6	6.43	9.51	7.52	7.49
Merged-chr10-70021947-1	chr10	70021447	70022447	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_170729, intron 40 of 40)	intron (NM_170729, intron 40 of 40)	-75174.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	1.14	4.15	5.55	4.72	1.4	0.0	0.0	2.65	5.0
Merged-chr18-5085230-1	chr18	5084730	5085730	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347449, intron 11 of 30)	intron (NM_001347449, intron 11 of 30)	38641.0	NM_001347449	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	6.29	5.07	7.4	2.7	4.67	2.41	4.22	2.21	4.37
Merged-chr11-98597509-1	chr11	98597009	98598009	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001195544)	promoter-TSS (NM_001195544)	-782.0	NM_001195544	192852.0	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	0.57	2.3	1.85	1.35	0.47	1.61	0.0	3.1	0.0
Merged-chr6-145116542-1	chr6	145116042	145117042	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281980, intron 1 of 18)	intron (NM_001281980, intron 1 of 18)	906.0	NM_001281981	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	14.87	18.43	26.82	4.05	7.46	6.43	31.69	29.18	21.86
Merged-chr7-89372152-1	chr7	89371652	89372652	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	32070.0	NM_001360746	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.15	2.3	0.0	4.05	3.27	5.63	4.22	2.21	9.99
Merged-chr10-37262575-2	chr10	37262067	37263067	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-123641.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	12.59	17.51	23.12	22.94	18.19	22.51	13.73	19.46	9.99
Merged-chr4-155700579-1	chr4	155700079	155701079	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-4236.0	NM_026899	68991.0	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	14.87	7.37	5.55	7.42	7.0	7.23	9.51	6.19	7.49
Merged-chr11-83224007-1	chr11	83223507	83224507	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015519, intron 1 of 3)	intron (NR_015519, intron 1 of 3)	431.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	185.92	205.05	98.97	180.15	147.42	131.82	202.79	179.52	99.92
Merged-chr3-116211021-1	chr3	116210521	116211521	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42463.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	5.15	3.23	0.92	4.72	0.93	4.82	4.22	8.84	1.87
Merged-chr4-7455324-1	chr4	7454824	7455824	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105364.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	4.58	1.84	0.0	11.47	8.4	4.82	23.24	16.36	12.49
Merged-chr1-59483271-1	chr1	59482771	59483771	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008057, exon 1 of 1)	exon (NM_008057, exon 1 of 1)	1124.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	35.47	23.04	25.9	35.09	17.26	33.76	31.69	35.37	33.1
Merged-chr8-68187502-1	chr8	68187002	68188002	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-89026.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	17.73	14.28	7.4	9.45	9.33	2.41	7.39	9.29	0.62
Merged-chr11-87143646-1	chr11	87143146	87144146	+	624.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197987, intron 5 of 23)	intron (NM_197987, intron 5 of 23)	16571.0	NM_197987	68729.0	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	10.3	11.52	9.25	12.82	7.93	10.45	11.62	15.03	13.12
Merged-chr8-77388410-1	chr8	77387910	77388910	+	624.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 11 of 22)	intron (NM_030113, intron 11 of 22)	-128646.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	6.29	4.15	11.1	6.07	9.33	3.22	5.28	7.07	1.25
Merged-chr7-130517166-2	chr7	130516675	130517675	+	623.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271343, intron 1 of 11)	MTD|LTR|ERVL-MaLR	2405.0	NM_001136054	11907.0	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	21.17	29.03	22.2	16.19	21.93	24.92	24.29	22.99	27.48
Merged-chr4-130915523-3	chr4	130915031	130916031	+	623.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010686, intron 1 of 7)	intron (NM_010686, intron 1 of 7)	2197.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	121.85	117.5	130.42	131.57	111.03	132.63	152.09	187.48	118.66
Merged-chr2-52785280-3	chr2	52784779	52785779	+	623.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43130.0	NM_019667	56324.0	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	1.72	2.76	1.85	8.1	2.8	0.0	6.34	3.98	6.25
Merged-chr19-9984130-1	chr19	9983630	9984630	+	623.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073181, intron 2 of 4)	intron (NR_073181, intron 2 of 4)	1484.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	124.14	161.27	84.17	176.1	228.59	109.32	177.44	221.97	90.56
Merged-chr15-97247887-3	chr15	97247370	97248370	+	623.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164563)	promoter-TSS (NM_001164563)	-583.0	NM_001164602	105827.0	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	94.96	92.62	61.05	138.99	97.5	113.33	99.28	84.45	32.48
Merged-chr19-40965424-1	chr19	40964924	40965924	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008528, intron 3 of 16)	intron (NM_008528, intron 3 of 16)	29111.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	3.43	4.61	3.7	4.72	1.4	3.22	3.17	3.54	3.75
Merged-chr4-124738920-3	chr4	124738433	124739433	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151694, intron 3 of 3)	intron (NR_151694, intron 3 of 3)	-2917.0	NM_008385	16330.0	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	32.04	22.58	39.77	37.78	16.79	50.64	40.14	36.7	25.61
Merged-chr2-120660642-3	chr2	120660155	120661155	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51060.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	37.76	35.02	27.75	39.81	32.66	53.05	58.09	45.99	34.35
Merged-chr13-59820324-3	chr13	59819816	59820816	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	2831.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	50.34	74.65	40.7	37.78	32.19	51.44	45.42	65.0	37.47
Merged-chr2-128769250-1	chr2	128768750	128769750	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	RLTR11B|LTR|ERVK	-49053.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	20.02	21.2	29.6	28.34	14.93	30.54	13.73	22.11	14.99
Merged-chr5-31772755-1	chr5	31772255	31773255	+	623.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 3 of 11)	L1ME1|LINE|L1	74705.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	2.86	6.91	3.7	10.12	0.93	4.02	2.11	4.42	2.5
Merged-chr17-65769591-3	chr17	65769033	65770033	+	623.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	3219.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	48.62	48.38	11.1	42.51	48.05	23.31	65.48	61.9	42.47
Merged-chr10-91208702-2	chr10	91208215	91209215	+	623.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151510, exon 4 of 4)	non-coding (NR_151510, exon 4 of 4)	11904.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	6.86	7.37	30.52	4.72	8.4	12.86	10.56	7.07	18.11
Merged-chr1-182494746-2	chr1	182494247	182495247	+	623.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009794, intron 2 of 20)	intron (NM_009794, intron 2 of 20)	22863.0	NM_009794	12334.0	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	7.44	5.53	12.95	8.1	7.93	6.43	3.17	0.44	2.5
Merged-chr5-43290070-2	chr5	43289578	43290578	+	623.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175937)	TTS (NM_175937)	-54724.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	4.58	3.23	3.7	6.07	4.67	3.22	8.45	3.54	7.49
Merged-chr8-127780779-2	chr8	127780294	127781294	+	623.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	481142.0	NM_001013580	93742.0	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	7.44	6.91	9.25	6.07	1.87	9.65	10.56	7.07	17.49
Merged-chr4-122902329-3	chr4	122901819	122902819	+	623.577759	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-16243.0	NM_001358036	12331.0	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	5.15	9.68	1.85	24.96	6.06	14.47	13.73	7.07	11.87
Merged-chr5-68012872-3	chr5	68012368	68013368	+	623.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18967.0	NM_001018019	433899.0	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	5.15	2.3	0.0	4.05	5.13	4.02	8.45	2.21	0.62
Merged-chr10-55096356-1	chr10	55095856	55096856	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1010561.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	17.16	10.14	1.85	8.1	9.33	8.04	7.39	4.42	6.25
Merged-chr14-66869720-2	chr14	66869231	66870231	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001034881, exon 1 of 1)	3' UTR (NM_001034881, exon 1 of 1)	881.0	NM_001034881	432870.0	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	50.34	63.13	47.17	40.48	41.05	34.56	57.03	59.69	32.48
Merged-chr11-113619339-1	chr11	113618839	113619839	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009217)	promoter-TSS (NM_009217)	-142.0	NM_009217	20606.0		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	1.14	1.38	1.85	4.72	2.8	1.61	1.06	0.0	0.0
Merged-chr13-104153022-1	chr13	104152522	104153522	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025879, intron 7 of 12)	intron (NM_025879, intron 7 of 12)	25444.0	NM_025879	66975.0	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	29.75	28.11	37.0	29.01	19.13	24.11	14.79	12.82	7.49
Merged-chr18-4346410-3	chr18	4345970	4346970	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	6483.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	38.9	32.25	26.82	29.69	34.06	29.74	47.53	48.64	22.48
Merged-chr1-178335269-1	chr1	178334769	178335769	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149827, intron 3 of 16)	intron (NR_149827, intron 3 of 16)	2546.0	NM_016805	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	44.62	51.15	25.9	34.41	20.53	30.54	46.47	44.66	27.48
Merged-chr19-55766101-2	chr19	55765600	55766600	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	24290.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	24.03	16.59	26.82	17.54	6.53	25.72	23.24	8.4	25.61
Merged-chr2-11218333-2	chr2	11217816	11218816	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008859, intron 1 of 17)	intron (NM_008859, intron 1 of 17)	45934.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	4.0	5.99	11.1	6.07	3.73	12.86	6.34	6.19	2.5
Merged-chr3-121536885-1	chr3	121536385	121537385	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4541.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	1.72	4.15	1.85	4.05	4.67	2.41	3.17	1.77	5.0
Merged-chr6-129747531-2	chr6	129747027	129748027	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7043.0	NM_177155	320407.0	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	16.02	9.68	12.02	14.84	5.6	13.66	6.34	2.21	1.25
Merged-chr8-40285896-1	chr8	40285396	40286396	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030610, intron 1 of 2)	intron (NM_030610, intron 1 of 2)	1057.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	2.86	1.38	3.7	2.02	1.87	1.61	1.06	3.98	5.0
Merged-chr5-134374120-2	chr5	134373614	134374614	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081462, intron 22 of 29)	intron (NM_001081462, intron 22 of 29)	47660.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	10.3	10.14	12.95	12.14	8.4	16.08	13.73	6.63	3.75
Merged-chr17-26649742-1	chr17	26649242	26650242	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026170, intron 9 of 9)	intron (NM_026170, intron 9 of 9)	-26654.0	NM_025272	11974.0	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	6.86	5.07	6.47	9.45	4.67	4.82	7.39	6.19	3.75
Merged-chr10-95590415-1	chr10	95589915	95590915	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26269.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	2.29	2.76	3.7	8.77	6.53	5.63	1.06	4.42	1.25
Merged-chr2-101653048-1	chr2	101652548	101653548	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3516.0	NM_009019	19373.0	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.0	0.92	3.7	1.35	0.93	3.22	4.22	3.1	2.5
Merged-chr11-97838902-2	chr11	97838417	97839417	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_010688)	TTS (NM_010688)	-1863.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	25.74	10.6	4.62	26.31	7.93	24.11	52.81	28.74	8.12
Merged-chr18-73844541-2	chr18	73844036	73845036	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14849.0	NM_027741	71263.0	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	7.44	10.14	7.4	8.1	6.06	3.22	6.34	3.54	5.0
Merged-chr10-59310304-2	chr10	59309805	59310805	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12991.0	NM_001316371	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	46.34	52.07	57.35	49.93	41.05	37.78	40.14	30.95	34.97
Merged-chr12-108639923-1	chr12	108639423	108640423	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 2 of 14)	intron (NM_001163396, intron 2 of 14)	4170.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	330.07	355.73	181.29	279.33	299.5	225.06	271.44	361.25	161.75
Merged-chr19-57925085-2	chr19	57924596	57925596	+	623.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 26 of 28)	intron (NM_181415, intron 26 of 28)	-126071.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	5.72	2.76	0.0	2.7	3.73	0.0	2.11	0.0	3.75
Merged-chr7-111478299-1	chr7	111477799	111478799	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360903, intron 10 of 10)	intron (NM_001360903, intron 10 of 10)	301678.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	13.73	12.44	3.7	11.47	17.73	25.72	17.96	16.36	11.24
Merged-chr13-41662869-1	chr13	41662369	41663369	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56653.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.72	2.76	0.0	6.75	3.27	2.41	4.22	3.1	3.75
Merged-chr16-35872152-1	chr16	35871652	35872652	+	623.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001039530)	promoter-TSS (NM_001039530)	-770.0	NM_001039530	547253.0	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	89.81	112.89	82.32	77.59	102.63	86.01	120.41	121.15	83.69
Merged-chr1-132194876-3	chr1	132194354	132195354	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033250, intron 1 of 3)	intron (NM_001033250, intron 1 of 3)	-3234.0	NR_029777	723818.0		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	2.86	1.84	5.55	3.37	1.4	3.22	1.06	0.44	2.5
Merged-chr13-99339369-1	chr13	99338869	99339869	+	623.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026873, intron 3 of 9)	intron (NM_026873, intron 3 of 9)	5309.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	20.59	19.35	27.75	6.07	14.0	19.29	42.25	34.93	24.98
Merged-chr6-128754468-1	chr6	128753968	128754968	+	623.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31422.0	NM_001099918	100043861.0	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	12.59	13.36	4.62	13.49	12.13	9.65	10.56	14.15	13.12
Merged-chr3-9001934-1	chr3	9001434	9002434	+	623.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	2270.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	50.91	46.54	40.7	33.06	38.72	45.82	53.87	39.35	34.97
Merged-chr11-100841048-3	chr11	100840565	100841565	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9520.0	NM_001113563	20851.0	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	18.88	10.14	4.62	13.49	9.33	9.65	17.96	15.92	7.49
Merged-chr11-52003670-3	chr11	52003181	52004181	+	623.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_153785)	promoter-TSS (NM_153785)	-540.0	NM_001166657	213084.0	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	320.92	402.26	230.31	344.78	337.29	257.21	430.92	527.51	246.06
Merged-chr2-93956588-1	chr2	93956088	93957088	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001145034, exon 1 of 1)	exon (NM_001145034, exon 1 of 1)	512.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	5.15	1.38	4.62	6.75	1.4	1.61	4.22	0.88	5.0
Merged-chr2-113824086-2	chr2	113823591	113824591	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009162, intron 2 of 5)	intron (NM_009162, intron 2 of 5)	5000.0	NM_009162	20394.0	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	2.29	1.84	0.0	2.7	4.2	0.0	2.11	0.88	1.87
Merged-chr10-40347958-2	chr10	40347470	40348470	+	623.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1338.0	NM_001291817	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	66.93	84.78	39.77	60.72	76.04	64.3	73.93	90.2	61.2
Merged-chr11-16954266-2	chr11	16953767	16954767	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_176982, exon 4 of 4)	exon (NM_176982, exon 4 of 4)	2857.0	NM_176982	319701.0	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	5.72	6.45	3.7	10.12	3.73	4.02	1.06	5.31	3.75
Merged-chr9-50478984-2	chr9	50478486	50479486	+	623.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15539.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	9.72	5.07	4.62	18.22	4.2	6.43	10.56	8.4	7.49
Merged-chr5-137075749-2	chr5	137075247	137076247	+	623.200012	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3475.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	28.03	11.52	10.17	17.54	14.93	17.68	34.85	23.88	6.25
Merged-chr10-88725505-3	chr10	88724983	88725983	+	623.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5618.0	NM_001037166	237433.0	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	5.72	8.29	0.0	6.75	11.2	4.82	3.17	4.42	8.74
Merged-chr10-29206897-3	chr10	29206395	29207395	+	623.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4748.0	NM_001162537	212448.0	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	3.43	8.29	1.85	6.07	11.2	8.04	1.06	3.54	7.49
Merged-chrX-48425503-2	chrX	48425002	48426002	+	623.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	37630.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	25.74	39.17	29.6	34.41	27.06	33.76	35.91	42.45	26.85
Merged-chr19-55767812-3	chr19	55767288	55768288	+	623.111145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	(TC)n|Simple_repeat|Simple_repeat	25978.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	50.91	60.82	50.87	51.28	34.06	48.23	51.75	42.01	22.48
Merged-chr13-43900923-1	chr13	43900423	43901423	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	115811.0	NM_001289915	12522.0	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	1.14	3.23	9.25	2.7	1.4	4.82	2.11	0.88	0.0
Merged-chr4-72366998-1	chr4	72366498	72367498	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT2B3|LTR|ERVL	165754.0	NR_027923	68285.0	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	1.72	4.15	14.8	6.75	6.06	1.61	2.11	4.86	5.0
Merged-chr1-58801981-1	chr1	58801481	58802481	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080126)	promoter-TSS (NM_001080126)	-521.0	NM_001080126	12370.0	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	62.35	87.09	55.5	72.19	81.64	89.22	92.94	90.2	74.32
Merged-chr12-72334307-1	chr12	72333807	72334807	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	74747.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	2.29	3.23	7.4	6.75	3.27	1.61	19.01	10.61	15.61
Merged-chr7-126765976-1	chr7	126765476	126766476	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024228)	promoter-TSS (NM_024228)	-438.0	NM_024228	68616.0	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	1.72	1.38	1.85	4.72	3.27	4.82	6.34	0.0	8.74
Merged-chr11-85523830-1	chr11	85523330	85524330	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	170666.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	32.04	23.96	21.27	68.15	50.38	45.82	47.53	49.96	23.11
Merged-chr5-30924107-1	chr5	30923607	30924607	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310524, intron 1 of 8)	intron (NM_001310524, intron 1 of 8)	2548.0	NM_001310524	16548.0	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	10.3	13.36	22.2	11.47	12.6	23.31	14.79	20.78	2.5
Merged-chr3-79221852-1	chr3	79221352	79222352	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045502, intron 1 of 2)	intron (NR_045502, intron 1 of 2)	8933.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	7.44	2.3	11.1	10.12	4.2	2.41	5.28	2.65	5.0
Merged-chrX-74283194-1	chrX	74282694	74283694	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001172154)	promoter-TSS (NM_001172154)	476.0	NM_001242615	66826.0	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	89.81	94.46	75.85	85.69	85.37	50.64	80.27	84.01	26.85
Merged-chr1-153931415-1	chr1	153930915	153931915	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	31486.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	16.59	10.6	12.95	12.14	10.26	12.86	16.9	7.07	18.11
Merged-chr5-125067323-1	chr5	125066823	125067823	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011424, intron 16 of 46)	intron (NM_011424, intron 16 of 46)	63848.0	NM_028443	73121.0	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	5.15	0.46	0.92	4.05	3.27	1.61	2.11	0.0	5.0
Merged-chr4-137994345-2	chr4	137993818	137994818	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256195, intron 2 of 34)	CpG-10542	862.0	NM_172703	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	182.49	185.24	137.82	193.64	150.22	172.01	201.73	174.66	128.65
Merged-chr18-23842563-1	chr18	23842063	23843063	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 3 of 7)	intron (NM_001162941, intron 3 of 7)	38593.0	NM_153058	212307.0	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	52.63	59.9	74.92	41.16	57.85	66.71	63.37	65.88	40.59
Merged-chr5-41887945-1	chr5	41887445	41888445	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3397.0	NR_105842	102465225.0		NR_105842	ENSMUSG00000098264	Mir6414	Gm27518|mmu-mir-6414	microRNA 6414	ncRNA	1.14	3.23	0.0	3.37	2.33	1.61	0.0	1.33	1.87
Merged-chr8-68996457-1	chr8	68995957	68996957	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-92279.0	NM_007509	11966.0	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	22.31	10.6	12.02	14.17	7.93	15.27	26.4	19.9	18.74
Merged-chr10-83819858-1	chr10	83819358	83820358	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	96993.0	NM_001145198	69784.0	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	1.72	1.84	0.92	1.35	1.4	6.43	1.06	0.0	2.5
Merged-chr13-81109101-1	chr13	81108601	81109601	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054053, intron 87 of 89)	intron (NM_054053, intron 87 of 89)	145027.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	60.07	71.88	26.82	78.94	90.5	85.2	65.48	92.41	39.97
Merged-chr11-96878781-1	chr11	96878281	96879281	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28388.0	NR_029562	387170.0		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	3.43	1.38	1.85	20.24	15.39	22.51	120.41	140.61	61.2
Merged-chr7-99135509-1	chr7	99135009	99136009	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	5635.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	41.76	49.3	54.57	49.93	23.79	41.8	30.63	34.05	24.36
Merged-chr3-96639405-1	chr3	96638905	96639905	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011069, intron 3 of 3)	B3|SINE|B2	3558.0	NM_001162388	18632.0	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	3.43	1.84	6.47	4.72	0.47	3.22	3.17	1.77	1.87
Merged-chr17-48266763-1	chr17	48266263	48267263	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033922, intron 2 of 5)	RLTR22_Mur|LTR|ERVK	2468.0	NM_001163796	224840.0	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	32.61	64.97	28.67	31.71	44.32	52.25	59.15	39.8	30.6
Merged-chr14-30362554-1	chr14	30362054	30363054	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028981, intron 1 of 46)	B4|SINE|B4	-9068.0	NM_001083616	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	4.58	1.84	1.85	4.05	1.87	1.61	6.34	1.77	5.0
Merged-chr4-95073544-1	chr4	95073044	95074044	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-21322.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	5.15	5.53	3.7	6.07	5.6	3.22	6.34	3.98	6.25
Merged-chr13-95489123-1	chr13	95488623	95489623	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L4_B_Mam|LINE|RTE-X	-10468.0	NM_001081159	268686.0	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	3.43	0.0	3.7	2.02	0.47	4.02	6.34	4.86	5.0
Merged-chr16-11005637-1	chr16	11005137	11006137	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3261.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	111.55	93.54	103.59	130.22	79.31	103.69	114.07	118.06	98.05
Merged-chr19-46394511-1	chr19	46394011	46395011	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016860, intron 1 of 10)	intron (NM_016860, intron 1 of 10)	1224.0	NM_016860	54130.0	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	34.9	33.64	14.8	33.74	7.46	24.11	32.74	43.77	16.86
Merged-chr18-83934452-2	chr18	83933947	83934947	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	152115.0	NM_001081300	110796.0	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	2.86	9.68	14.8	6.07	10.26	4.82	12.67	6.63	0.0
Merged-chr1-59762825-1	chr1	59762325	59763325	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1454.0	NM_007561	12168.0	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	28.6	36.4	32.37	68.15	55.98	61.09	47.53	41.12	23.73
Merged-chr3-105712025-1	chr3	105711525	105712525	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163356, intron 1 of 1)	intron (NM_001163356, intron 1 of 1)	6567.0	NM_001163356	109050.0	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	6.29	5.07	3.7	6.07	3.27	3.22	5.28	6.63	8.74
Merged-chr11-60703315-1	chr11	60702815	60703815	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008502, intron 2 of 20)	intron (NM_008502, intron 2 of 20)	3625.0	NM_008502	16897.0	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	LLGL1 scribble cell polarity complex component	protein-coding	4.58	3.23	3.7	2.02	0.0	1.61	1.06	1.33	5.0
Merged-chr11-74848038-1	chr11	74847538	74848538	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17114.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	8.58	3.23	1.85	8.1	2.8	1.61	4.22	4.42	1.87
Merged-chr4-122996425-1	chr4	122995925	122996925	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008506, exon 1 of 2)	5' UTR (NM_008506, exon 1 of 2)	494.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	4.58	2.3	12.95	6.07	0.93	7.23	8.45	1.77	5.0
Merged-chr9-83592053-1	chr9	83591553	83592553	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 2 of 3)	intron (NM_172507, intron 2 of 3)	43715.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	4.58	4.61	3.7	6.07	4.2	3.22	7.39	2.65	8.74
Merged-chr11-103114642-1	chr11	103114142	103115142	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1683.0	NM_138753	192231.0	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	72.08	104.14	64.75	69.5	86.77	90.83	67.6	57.04	26.85
Merged-chr2-90625179-1	chr2	90624679	90625679	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44532.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.15	4.15	3.7	10.8	9.33	1.61	5.28	1.77	3.12
Merged-chr16-33185870-1	chr16	33185370	33186370	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_176840, exon 1 of 13)	exon (NM_176840, exon 1 of 13)	799.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	231.11	263.57	165.57	188.92	208.53	171.21	188.0	240.98	181.74
Merged-chr14-26530549-1	chr14	26530049	26531049	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	4075.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	19.45	19.81	14.8	12.14	24.72	9.65	24.29	11.05	5.62
Merged-chr18-9506391-1	chr18	9505891	9506891	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56237.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.59	12.9	5.55	24.96	14.46	4.02	33.8	17.69	6.87
Merged-chr14-50056618-1	chr14	50056118	50057118	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-21118.0	NM_146317	258314.0	Mm.223011	NM_146317	ENSMUSG00000068437	Olfr725	MOR246-3|MOR246-7_p	olfactory receptor 725	protein-coding	2.86	2.76	0.0	1.35	2.33	0.0	3.17	5.31	7.49
Merged-chr9-8004683-1	chr9	8004183	8005183	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001171147)	promoter-TSS (NM_001171147)	-87.0	NM_001171147	22601.0	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	5.15	3.23	7.4	6.07	4.2	2.41	6.34	1.77	0.0
Merged-chr13-23696332-1	chr13	23695832	23696832	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010377, exon 1 of 1)	exon (NM_010377, exon 1 of 1)	521.0	NM_010377	107970.0	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	12.59	4.61	12.95	9.45	7.46	12.86	17.96	12.38	16.24
Merged-chr11-120340249-1	chr11	120339749	120340749	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR11B|LTR|ERVK	7164.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	4.0	1.38	3.7	3.37	2.33	1.61	4.22	1.33	3.12
Merged-chr3-89953644-1	chr3	89953144	89954144	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081182, intron 11 of 27)	intron (NM_001081182, intron 11 of 27)	9688.0	NM_001081182	54667.0	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	8.01	3.23	0.92	4.05	4.67	4.82	1.06	1.33	1.25
Merged-chr2-102981033-1	chr2	102980533	102981533	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79368.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.58	5.99	1.85	10.12	3.73	6.43	8.45	5.75	6.25
Merged-chr9-50728099-1	chr9	50727599	50728599	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178118)	promoter-TSS (NM_178118)	-115.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	5.72	0.92	1.85	2.7	2.33	3.22	3.17	1.77	6.25
Merged-chr12-108630258-1	chr12	108629758	108630758	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163395, intron 1 of 12)	intron (NM_001163395, intron 1 of 12)	-5495.0	NM_001163396	14026.0	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774|b2b2600Clo	Ena-vasodilator stimulated phosphoprotein	protein-coding	40.62	38.71	37.0	25.64	21.93	25.72	27.46	32.28	24.36
Merged-chr15-58803110-1	chr15	58802610	58803610	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	20317.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	36.04	42.85	11.1	26.31	19.59	9.65	51.75	47.31	13.74
Merged-chr14-33276526-1	chr14	33276026	33277026	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 3 of 10)	B4A|SINE|B4	59703.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	5.72	4.15	7.4	8.1	8.4	6.43	5.28	3.54	8.12
Merged-chr9-107675898-1	chr9	107675398	107676398	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008140, exon 8 of 9)	exon (NM_008140, exon 8 of 9)	3694.0	NM_008140	14685.0	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	5.15	4.61	3.7	3.37	2.8	2.41	1.06	1.33	1.25
Merged-chr9-75312177-2	chr9	75311674	75312674	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010313, intron 2 of 12)	intron (NM_010313, intron 2 of 12)	-1894.0	NR_073186	14697.0	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.57	4.15	4.62	2.7	3.73	3.22	0.0	0.88	1.87
Merged-chr11-118201709-1	chr11	118201209	118202209	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	11033.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	76.08	66.35	60.12	90.41	90.04	123.78	72.88	81.36	33.1
Merged-chr13-92678760-2	chr13	92678272	92679272	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172588, intron 2 of 11)	intron (NM_172588, intron 2 of 11)	67634.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	9.72	9.22	15.72	10.12	10.26	14.47	14.79	15.48	8.12
Merged-chr14-21312057-1	chr14	21311557	21312557	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 6 of 10)	intron (NM_134079, intron 6 of 10)	-187713.0	NM_001205241	54169.0	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.43	2.3	0.0	4.05	1.87	3.22	7.39	4.86	5.0
Merged-chr14-63121618-1	chr14	63121118	63122118	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007798)	promoter-TSS (NM_007798)	-844.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	77.23	89.39	77.7	66.8	69.04	102.08	95.06	109.66	64.33
Merged-chr13-107057860-1	chr13	107057360	107058360	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	35290.0	NR_015471	100040322.0	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	9.15	4.61	0.0	7.42	2.33	1.61	6.34	4.86	3.75
Merged-chr2-28242303-1	chr2	28241803	28242803	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36614.0	NM_019498	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	2.29	1.84	0.0	5.4	7.46	6.43	3.17	3.98	3.75
Merged-chr9-21261976-1	chr9	21261476	21262476	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger5|DNA|TcMar-Tigger	-3309.0	NM_153583	235040.0	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	7.44	5.99	16.65	8.1	1.4	19.29	2.11	2.21	6.87
Merged-chrX-48428337-1	chrX	48427837	48428837	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	34795.0	NM_019680	56501.0	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	48.05	49.76	50.87	39.81	25.19	50.64	47.53	50.41	38.72
Merged-chr18-75917929-1	chr18	75917429	75918429	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145356, intron 2 of 4)	intron (NM_145356, intron 2 of 4)	97751.0	NM_145356	207259.0	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	1.14	1.38	3.7	0.0	0.47	1.61	3.17	2.21	0.0
Merged-chr1-191439868-1	chr1	191439368	191440368	+	623.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151615, intron 5 of 5)	MTD|LTR|ERVL-MaLR	25180.0	NR_151615	102634668.0		NR_151615		Gm32200	-	predicted gene, 32200	ncRNA	7.44	6.45	1.85	6.07	0.93	4.02	16.9	3.98	2.5
Merged-chr1-189675544-1	chr1	189675044	189676044	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081363, intron 7 of 17)	intron (NM_001081363, intron 7 of 17)	12542.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	1.14	3.23	1.85	3.37	1.87	5.63	7.39	4.42	0.0
Merged-chr15-54921129-2	chr15	54920600	54921600	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136077)	promoter-TSS (NM_001136077)	-954.0	NM_001285994	18606.0	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	16.02	12.9	12.95	8.77	7.46	9.65	13.73	19.9	9.37
Merged-chr13-83069059-1	chr13	83068559	83069559	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-370726.0	NR_039537	100628621.0		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	13.16	11.52	9.25	10.8	15.39	18.49	16.9	9.29	17.49
Merged-chr1-88134690-1	chr1	88134190	88135190	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145079)	promoter-TSS (NM_145079)	-119.0	NM_145079	94284.0	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	2.29	7.37	3.7	9.45	0.93	6.43	1.06	1.77	2.5
Merged-chr15-85331793-2	chr15	85331311	85332311	+	623.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4570.0	NM_016843	54138.0	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	17.16	9.22	13.87	9.45	7.46	18.49	11.62	15.92	9.37
Merged-chr11-95533926-1	chr11	95533426	95534426	+	623.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19361.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	2.86	0.46	0.92	1.35	0.93	0.0	2.11	1.77	3.75
Merged-chr6-134659467-3	chr6	134658947	134659947	+	622.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170479, intron 2 of 3)	RSINE1|SINE|B4	18507.0	NM_026371	67774.0	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	4.58	8.29	0.0	6.75	0.0	0.0	3.17	2.65	5.0
Merged-chr18-57577173-2	chr18	57576664	57577664	+	622.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	MLT1C|LTR|ERVL-MaLR	-24767.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	13.73	24.42	5.55	10.8	15.86	19.29	16.9	11.05	7.49
Merged-chr12-34779505-2	chr12	34779002	34780002	+	622.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	137593.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	41.19	57.6	43.47	31.04	29.39	28.94	22.18	37.14	18.74
Merged-chr2-120381605-3	chr2	120381096	120382096	+	622.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110497, intron 7 of 19)	intron (NM_001110497, intron 7 of 19)	-22300.0	NM_172672	76051.0	Mm.38851	NM_172672	ENSMUSG00000062646	Ganc	5830445O15Rik|9330160A12|mFLJ00088	glucosidase, alpha; neutral C	protein-coding	18.88	24.42	19.42	25.64	24.72	39.39	30.63	37.58	17.49
Merged-chr4-123687690-2	chr4	123687152	123688152	+	622.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3292.0	NM_001199136	11426.0	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	2.86	0.92	2.77	6.75	2.33	4.82	7.39	1.33	0.0
Merged-chr11-50431582-2	chr11	50431058	50432058	+	622.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172557)	promoter-TSS (NM_172557)	-447.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	236.26	282.46	139.67	225.36	309.3	225.06	302.07	287.85	143.02
Merged-chr13-45438224-1	chr13	45437724	45438724	+	622.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	48482.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	3.43	4.15	1.85	6.75	6.06	0.8	5.28	4.86	0.0
Merged-chr12-5410564-1	chr12	5410064	5411064	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015579, intron 1 of 1)	intron (NR_015579, intron 1 of 1)	34062.0	NR_015579	72669.0	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	1.72	2.3	4.62	1.35	2.8	1.61	2.11	2.21	3.75
Merged-chr2-158134081-1	chr2	158133581	158134581	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009373, intron 4 of 12)	MIR3|SINE|MIR	12311.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	152.17	158.51	141.52	162.61	162.81	184.87	113.01	154.32	103.67
Merged-chr3-142630603-1	chr3	142630103	142631103	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010260, exon 6 of 11)	exon (NM_010260, exon 6 of 11)	-6657.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	3.43	9.22	3.7	5.4	1.4	0.8	2.11	6.19	1.25
Merged-chr11-23810888-1	chr11	23810388	23811388	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39918.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	8.58	16.59	8.32	15.52	11.66	26.53	16.9	5.31	13.12
Merged-chr4-103107727-1	chr4	103107227	103108227	+	622.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	6572.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	16.02	34.1	35.15	12.82	18.19	16.08	52.81	32.28	21.86
Merged-chr11-73006589-1	chr11	73006089	73007089	+	622.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008771, intron 1 of 11)	intron (NM_008771, intron 1 of 11)	7444.0	NM_008771	18436.0	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	4.0	1.38	5.55	6.75	1.87	3.22	1.06	2.21	6.25
Merged-chr1-62691360-2	chr1	62690848	62691848	+	622.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-11969.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	4.0	2.76	1.85	4.05	1.4	3.22	0.0	6.63	3.12
Merged-chr16-90281142-2	chr16	90280653	90281653	+	622.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3333.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	20.59	23.5	22.2	26.31	12.6	24.92	24.29	27.41	12.49
Merged-chr1-73902453-3	chr1	73901929	73902929	+	622.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37963.0	NR_045311	109198.0	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	1.14	2.76	0.0	2.02	0.47	3.22	3.17	1.33	7.49
Merged-chr16-50737300-2	chr16	50736799	50737799	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4526.0	NR_028300	68190.0	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	279.16	285.69	112.84	271.24	250.98	215.42	231.3	332.95	129.9
Merged-chr8-39650691-1	chr8	39650191	39651191	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-8013.0	NM_001113326	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	36.04	47.92	39.77	52.63	50.38	63.5	29.57	33.6	28.1
Merged-chr9-75582122-1	chr9	75581622	75582622	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038710, intron 6 of 9)	intron (NM_001038710, intron 6 of 9)	17011.0	NM_001038710	50876.0	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	5.15	0.92	0.0	4.05	1.87	3.22	1.06	1.33	1.25
Merged-chr14-70629634-1	chr14	70629134	70630134	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252665)	promoter-TSS (NM_001252665)	520.0	NM_013514	13829.0	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	3.43	2.76	0.0	1.35	3.73	1.61	0.0	0.0	1.25
Merged-chr2-101159503-1	chr2	101159003	101160003	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-465245.0	NM_009020	19374.0	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	7.44	2.3	3.7	2.02	1.4	3.22	2.11	4.86	3.75
Merged-chr2-159735437-1	chr2	159734937	159735937	+	622.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-211904.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	1.14	2.76	3.7	3.37	6.06	8.04	11.62	18.13	18.11
Merged-chr5-65089798-2	chr5	65089296	65090296	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17772.0	NM_001347355	71778.0	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	12.01	12.44	14.8	14.17	8.4	5.63	9.51	19.46	13.12
Merged-chr5-122627459-2	chr5	122626952	122627952	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12908.0	NM_009879	12589.0	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	1.14	2.3	9.25	6.75	0.93	1.61	3.17	0.0	0.62
Merged-chr16-32638708-2	chr16	32638185	32639185	+	622.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5958.0	NM_001110147	51789.0	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	2.29	2.76	3.7	3.37	2.33	4.82	2.11	0.0	3.12
Merged-chr9-75435151-1	chr9	75434651	75435651	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-6373.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	141.87	127.18	102.67	154.51	115.23	121.37	142.59	211.36	114.91
Merged-chr16-77019709-1	chr16	77019209	77020209	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	5640.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	12.01	12.44	10.17	16.19	9.8	11.25	15.84	6.63	16.24
Merged-chrX-20819886-1	chrX	20819386	20820386	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28657.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	6.29	8.75	7.4	8.77	3.27	3.22	5.28	7.96	4.37
Merged-chr13-9099866-1	chr13	9099366	9100366	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	5985.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	35.47	20.27	12.95	31.04	17.73	19.29	36.97	28.3	22.48
Merged-chr12-86947914-1	chr12	86947414	86948414	+	622.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173735, intron 1 of 3)	CpG	571.0	NM_001289432	217732.0	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	92.67	80.64	34.22	109.98	102.63	53.05	83.44	64.11	38.72
Merged-chr7-81243256-3	chr7	81242766	81243766	+	622.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	intron (NM_008803, intron 1 of 21)	29462.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	21.17	12.44	13.87	21.59	11.66	13.66	14.79	9.29	16.24
Merged-chr2-181487788-3	chr2	181487291	181488291	+	622.388855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5415.0	NM_183181	241850.0	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	38.9	52.53	56.42	45.21	36.85	90.02	42.25	60.13	37.47
Merged-chr14-78733582-2	chr14	78733045	78734045	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-816.0	NM_001081336	380921.0	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	22.88	37.32	17.57	31.71	54.11	18.49	9.51	13.71	10.62
Merged-chr2-128203295-3	chr2	128202788	128203788	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	75713.0	NM_001284410	12125.0	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.86	1.38	0.0	6.75	0.93	8.04	3.17	5.31	2.5
Merged-chr9-37253359-1	chr9	37252859	37253859	+	622.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145960, intron 1 of 18)	(A)n|Simple_repeat|Simple_repeat	2379.0	NM_020258	56857.0	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	41.76	23.96	25.9	41.83	53.65	24.92	23.24	14.59	10.62
Merged-chr13-23464395-1	chr13	23463895	23464895	+	622.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013483, exon 3 of 8)	exon (NM_013483, exon 3 of 8)	1506.0	NM_013483	12231.0	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	6.29	2.76	6.47	6.75	1.4	1.61	7.39	0.44	2.5
Merged-chr8-104249864-3	chr8	104249359	104250359	+	622.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1002.0	NM_001037841	75458.0	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	33.18	25.34	24.05	31.71	13.06	40.19	46.47	30.51	21.86
Merged-chr17-87064194-1	chr17	87063694	87064694	+	622.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38633.0	NM_019936	56724.0	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	2.86	4.15	0.0	1.35	3.73	4.82	3.17	1.77	0.0
Merged-chr12-103368026-2	chr12	103367533	103368533	+	622.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8861.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	14.3	5.07	9.25	7.42	6.06	4.82	6.34	3.98	5.0
Merged-chr1-65112199-2	chr1	65111717	65112717	+	622.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175293, intron 5 of 7)	intron (NM_175293, intron 5 of 7)	-8854.0	NM_007774	12964.0	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	135.58	123.49	63.82	190.27	183.8	126.19	212.29	272.37	104.92
Merged-chr15-89231188-2	chr15	89230692	89231692	+	622.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026813, intron 1 of 24)	MLTR11B|LTR|ERVK	19633.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	12.59	14.75	12.02	20.24	18.66	24.92	14.79	12.38	13.74
Merged-chr8-4109068-3	chr8	4108549	4109549	+	622.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3285.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	12.01	10.14	15.72	7.42	13.06	17.68	8.45	3.1	13.12
Merged-chr8-105544048-3	chr8	105543568	105544568	+	622.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	21996.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	32.04	23.5	22.2	14.17	11.2	14.47	20.07	9.29	19.36
Merged-chr13-58484874-2	chr13	58484374	58485374	+	622.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-81531.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	6.86	5.53	7.4	11.47	13.06	4.82	4.22	3.1	5.62
Merged-chr8-104146428-2	chr8	104145953	104146953	+	622.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24060.0	NM_001141924	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	11.44	6.45	7.4	4.72	3.27	9.65	8.45	1.33	5.0
Merged-chr2-66180422-1	chr2	66179922	66180922	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55629.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	9.15	9.68	22.2	7.42	16.79	10.45	17.96	11.5	3.75
Merged-chr3-130888073-1	chr3	130887573	130888573	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-157675.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	3.43	1.38	1.85	1.35	1.4	3.22	4.22	2.21	1.25
Merged-chr2-59969335-1	chr2	59968835	59969835	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001182, exon 7 of 36)	exon (NM_001001182, exon 7 of 36)	-86729.0	NM_028118	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.0	5.99	3.7	4.72	3.27	3.22	4.22	2.65	6.25
Merged-chrX-77790877-1	chrX	77790377	77791377	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016979, intron 1 of 8)	intron (NM_016979, intron 1 of 8)	5083.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	10.3	4.61	14.8	3.37	7.46	6.43	3.17	7.52	4.37
Merged-chr3-79018824-1	chr3	79018324	79019324	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	126063.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	11.44	7.37	15.72	9.45	2.33	24.92	5.28	4.42	16.24
Merged-chr7-4238566-1	chr7	4238066	4239066	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001081239, exon 4 of 6)	exon (NM_001081239, exon 4 of 6)	812.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	335.22	437.28	266.39	376.49	318.63	299.01	415.08	494.34	242.94
Merged-chr2-155584319-1	chr2	155583819	155584819	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291111, intron 1 of 11)	RSINE1|SINE|B4	8491.0	NM_001291111	14854.0	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	12.59	7.37	11.1	10.12	7.46	14.47	5.28	10.17	10.62
Merged-chr6-54963074-1	chr6	54962574	54963574	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172729, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	8587.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	11.44	10.6	24.05	6.75	6.06	9.65	15.84	10.17	10.62
Merged-chr19-41054906-1	chr19	41054406	41055406	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001043228, intron 9 of 10)	intron (NM_001043228, intron 9 of 10)	22207.0	NM_153520	226115.0	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	9.72	3.23	7.4	4.05	1.4	3.22	6.34	7.52	9.99
Merged-chr1-43916189-1	chr1	43915689	43916689	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-17805.0	NM_001310540	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	55.49	53.45	47.17	87.04	43.39	70.73	84.49	71.19	46.22
Merged-chr17-26439093-1	chr17	26438593	26439593	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081656, exon 3 of 5)	exon (NM_001081656, exon 3 of 5)	24128.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	7.44	3.69	2.77	14.84	3.27	16.08	12.67	2.65	3.12
Merged-chr1-85900682-1	chr1	85900182	85901182	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	6172.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	15.45	19.35	22.2	14.17	8.86	20.9	26.4	22.55	10.62
Merged-chr1-134305227-1	chr1	134304727	134305727	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001144855, intron 23 of 28)	L2a|LINE|L2	15223.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	1.14	2.3	1.85	75.57	77.44	89.22	67.6	61.02	63.08
Merged-chr7-67494534-1	chr7	67494034	67495034	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-121676.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	5.15	8.75	7.4	7.42	5.13	16.08	1.06	4.42	5.0
Merged-chr4-125160493-1	chr4	125159993	125160993	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32612.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	2.86	0.46	1.85	3.37	0.47	4.82	0.0	2.65	0.0
Merged-chr19-17393489-1	chr19	17392989	17393989	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019437)	promoter-TSS (NM_019437)	-554.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	14.3	10.14	0.0	14.84	9.33	13.66	11.62	11.5	9.99
Merged-chr1-171210991-1	chr1	171210491	171211491	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2979.0	NM_009803	12355.0	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	5.72	8.29	6.47	8.77	5.13	4.82	4.22	5.75	6.87
Merged-chr5-140751218-2	chr5	140750707	140751707	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173405, intron 7 of 7)	intron (NM_173405, intron 7 of 7)	27080.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	8.58	5.07	18.5	8.1	7.0	9.65	2.11	1.77	2.5
Merged-chr18-83361397-1	chr18	83360897	83361897	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35513.0	NR_045361	70960.0	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.57	3.23	1.85	4.05	4.67	6.43	8.45	6.19	2.5
Merged-chr9-58979219-1	chr9	58978719	58979719	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008684, intron 4 of 28)	intron (NM_008684, intron 4 of 28)	57222.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	4.0	4.61	1.85	8.77	11.66	10.45	5.28	3.54	3.75
Merged-chr3-84774455-1	chr3	84773955	84774955	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41122.0	NM_001177773	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	8.01	7.37	3.7	10.8	3.27	2.41	7.39	3.54	5.0
Merged-chr3-89391225-1	chr3	89390725	89391725	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040403)	promoter-TSS (NR_040403)	-639.0	NR_040403	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	58.35	55.29	70.3	29.69	24.72	40.19	52.81	45.54	49.34
Merged-chr5-99619208-1	chr5	99618708	99619708	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	109852.0	NR_030692	319818.0	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	4.58	2.3	3.7	2.7	5.6	3.22	3.17	1.33	5.0
Merged-chr6-124415506-1	chr6	124415006	124416006	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001277330)	promoter-TSS (NM_001277330)	349.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	107.55	152.06	88.8	100.53	105.9	81.18	141.53	132.65	77.44
Merged-chr2-167605396-2	chr2	167604897	167605897	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	26608.0	NM_001311146	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	4.58	2.76	0.92	4.72	0.93	1.61	4.22	0.44	3.75
Merged-chr16-65377314-1	chr16	65376814	65377814	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-143315.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.58	4.61	1.85	3.37	9.33	8.04	7.39	3.1	1.25
Merged-chr10-93279293-1	chr10	93278793	93279793	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 2 of 4)	intron (NM_001322265, intron 2 of 4)	31866.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	4.0	4.61	7.4	5.4	4.2	8.04	6.34	2.21	8.12
Merged-chr10-127126808-2	chr10	127126314	127127314	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-5654.0	NM_001171026	216440.0	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	3.43	1.38	0.0	5.4	3.27	1.61	2.11	1.77	1.25
Merged-chr1-45947951-1	chr1	45947451	45948451	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22357.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	2.29	5.53	7.4	2.02	5.6	0.8	2.11	7.07	6.25
Merged-chr6-5639808-1	chr6	5639308	5640308	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85831.0	NM_001191023	13426.0	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	1.72	0.46	1.85	2.02	0.93	1.61	0.0	3.98	2.5
Merged-chr18-36503656-1	chr18	36503156	36504156	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TTAA)n|Simple_repeat|Simple_repeat	12149.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	1.72	2.76	1.85	0.67	2.33	11.25	4.22	3.54	1.25
Merged-chr14-26476116-1	chr14	26475616	26476616	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 2 of 22)	intron (NM_001310445, intron 2 of 22)	58508.0	NM_032008	83997.0	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	8.58	10.6	5.55	8.1	4.67	3.22	2.11	7.96	5.0
Merged-chr11-70080122-1	chr11	70079622	70080622	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-12522.0	NM_007493	11890.0	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	4.58	7.83	1.85	4.05	3.27	4.02	0.0	2.65	1.87
Merged-chr2-8674219-1	chr2	8673719	8674719	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-515296.0	NR_038180	73438.0	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	1.72	0.92	0.0	2.02	2.33	5.63	0.0	3.1	1.25
Merged-chr4-149696421-1	chr4	149695921	149696921	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001029837, intron 1 of 23)	intron (NM_001029837, intron 1 of 23)	2287.0	NM_001164050	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	42.9	20.27	22.2	44.53	20.06	28.94	39.08	41.12	29.98
Merged-chr5-142764504-1	chr5	142764004	142765004	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122730, intron 12 of 27)	intron (NM_001122730, intron 12 of 27)	52883.0	NM_178242	231861.0	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	3.43	3.69	7.4	3.37	6.53	4.02	7.39	3.1	3.75
Merged-chr6-89258872-1	chr6	89258372	89259372	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26853.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	104.69	95.84	59.2	105.93	110.1	129.41	88.72	107.45	56.21
Merged-chr1-39859438-1	chr1	39858938	39859938	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-12108.0	NR_040465	73426.0	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	3.43	2.76	11.1	8.1	3.73	0.8	4.22	3.1	3.75
Merged-chr12-57297114-1	chr12	57296614	57297614	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	66689.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	4.0	3.69	3.7	2.7	3.27	0.0	5.28	4.86	3.75
Merged-chr10-86863594-1	chr10	86863094	86864094	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138673, intron 54 of 68)	intron (NM_138673, intron 54 of 68)	84589.0	NM_175331	103466.0	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	2.86	4.15	13.87	3.37	0.93	6.43	11.62	3.98	5.0
Merged-chr2-138257578-1	chr2	138257078	138258078	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	994.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	25.17	26.26	33.3	18.22	17.73	21.7	11.62	27.86	13.12
Merged-chr3-27646047-2	chr3	27645553	27646553	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173182, intron 1 of 25)	intron (NM_173182, intron 1 of 25)	-61058.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	1.72	7.83	6.47	4.72	2.33	3.22	3.17	1.77	2.5
Merged-chr14-61817888-1	chr14	61817388	61818388	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-135515.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	10.3	17.97	7.4	16.19	14.93	24.92	25.35	22.99	8.74
Merged-chr6-134775011-1	chr6	134774511	134775511	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-17349.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	4.58	8.75	9.25	7.42	8.4	11.25	7.39	2.65	11.24
Merged-chr3-15285566-1	chr3	15285066	15286066	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46736.0	NM_001076679	751864.0	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	122.99	152.06	81.4	155.19	163.28	97.26	90.83	88.88	73.69
Merged-chr5-138705368-1	chr5	138704868	138705868	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49713.0	NM_030565	80752.0	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.57	1.38	1.85	5.4	5.6	6.43	4.22	3.1	3.12
Merged-chr11-119339867-1	chr11	119339367	119340367	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130886, intron 18 of 21)	B3|SINE|B2	15643.0	NM_018822	27029.0	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	8.58	2.3	3.7	3.37	0.93	1.61	3.17	0.88	0.62
Merged-chr6-88027569-1	chr6	88027069	88028069	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	-7774.0	NM_001293654	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	14.3	20.27	23.12	28.34	20.53	22.51	12.67	17.24	11.87
Merged-chr13-52646553-1	chr13	52646053	52647053	+	622.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001198977, exon 14 of 14)	3' UTR (NM_001198977, exon 14 of 14)	49671.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.0	3.23	7.4	3.37	5.6	19.29	5.28	2.21	6.25
Merged-chr18-68197521-1	chr18	68197021	68198021	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172631, intron 3 of 5)	intron (NM_172631, intron 3 of 5)	-30425.0	NM_001357444	52662.0	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	9.15	13.36	8.32	12.14	10.26	5.63	6.34	4.42	9.99
Merged-chr6-147099562-1	chr6	147099062	147100062	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081237, intron 1 of 2)	intron (NM_001081237, intron 1 of 2)	8487.0	NM_001081237	232539.0	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.57	4.61	10.17	6.75	8.4	6.43	7.39	0.44	5.62
Merged-chr15-59662758-1	chr15	59662258	59663258	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14104.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.29	0.92	6.47	3.37	3.27	2.41	7.39	0.88	1.25
Merged-chr2-83754519-1	chr2	83754019	83755019	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 3 of 29)	MTD|LTR|ERVL-MaLR	30122.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	17.16	25.34	30.52	14.84	20.06	20.9	25.35	9.73	24.98
Merged-chr3-58689385-1	chr3	58688885	58689885	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009174, intron 1 of 1)	Lx|LINE|L1	3003.0	NM_009174	20439.0	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	siah E3 ubiquitin protein ligase 2	protein-coding	17.16	4.61	5.55	8.1	3.73	3.22	6.34	4.86	5.0
Merged-chr12-75572476-1	chr12	75571976	75572976	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012024, intron 2 of 13)	intron (NM_012024, intron 2 of 13)	23724.0	NM_012024	26932.0	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	3.43	4.61	9.25	4.72	1.4	1.61	4.22	0.0	16.24
Merged-chr8-57622969-2	chr8	57622479	57623479	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001167981, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	-28774.0	NR_040698	100502619.0	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	1.72	3.69	0.92	0.67	0.93	6.43	6.34	1.33	0.0
Merged-chr13-41326361-1	chr13	41325861	41326861	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111324, intron 3 of 7)	intron (NM_001111324, intron 3 of 7)	32640.0	NM_017464	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.58	4.15	18.5	6.07	3.27	4.82	6.34	2.21	3.75
Merged-chr11-95853876-1	chr11	95853376	95854376	+	622.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4941.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	22.31	18.43	7.4	26.99	14.46	14.47	15.84	19.9	15.61
Merged-chr18-57806032-1	chr18	57805532	57806532	+	622.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13699.0	NR_152225	100503033.0	Mm.381112	NR_152224		Gm19519	-	predicted gene, 19519	ncRNA	6.29	1.84	0.0	0.0	4.2	1.61	5.28	1.33	6.25
Merged-chr10-60697198-3	chr10	60696697	60697697	+	621.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045556)	promoter-TSS (NR_045556)	-707.0	NM_023370	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	1.72	2.76	5.55	2.02	6.06	6.43	4.22	1.33	3.12
Merged-chr11-55498163-3	chr11	55497674	55498674	+	621.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013716, intron 10 of 11)	intron (NM_013716, intron 10 of 11)	-3052.0	NR_106112	102465760.0		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	5.72	5.99	0.0	4.72	0.93	16.88	13.73	6.63	7.49
Merged-chr11-97546501-2	chr11	97545977	97546977	+	621.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	CpG	28649.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	21.74	6.45	18.5	12.14	4.67	8.84	54.92	30.95	13.74
Merged-chr11-114667790-2	chr11	114667280	114668280	+	621.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023372)	promoter-TSS (NM_023372)	-763.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	7.44	5.07	0.0	9.45	7.93	19.29	10.56	12.82	28.73
Merged-chr6-89000480-2	chr6	88999988	89000988	+	621.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95622.0	NR_134978	232217.0	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	5.72	5.99	5.55	9.45	7.46	6.43	2.11	5.31	3.12
Merged-chr7-28391782-1	chr7	28391282	28392282	+	621.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026042, intron 1 of 3)	intron (NM_026042, intron 1 of 3)	908.0	NM_026042	67224.0	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	44.05	39.63	22.2	35.76	17.73	25.72	51.75	41.56	38.72
Merged-chr6-113245763-3	chr6	113245264	113246264	+	621.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155434, intron 2 of 17)	intron (NR_155434, intron 2 of 17)	7921.0	NR_155433	97287.0	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	16.59	10.6	9.25	9.45	6.53	22.51	19.01	15.03	7.49
Merged-chr2-32665541-1	chr2	32665041	32666041	+	621.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146348, intron 2 of 14)	intron (NM_001146348, intron 2 of 14)	13212.0	NR_035479	100316776.0		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	12.59	5.07	2.77	10.8	7.93	8.04	2.11	0.88	0.0
Merged-chr2-73427530-1	chr2	73427030	73428030	+	621.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26359.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	8.01	7.83	1.85	8.1	3.27	9.65	5.28	4.86	3.75
Merged-chr2-144331275-2	chr2	144330765	144331765	+	621.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_152947)	promoter-TSS (NM_152947)	97.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	3.43	2.3	0.0	4.72	1.87	0.0	4.22	3.98	2.5
Merged-chr7-43282917-2	chr7	43282428	43283428	+	621.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	30372.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	5.72	3.69	0.0	4.72	3.73	3.22	4.22	3.1	2.5
Merged-chr6-97150465-3	chr6	97149971	97150971	+	621.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1588.0	NM_175313	101351.0	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	106.4	142.84	85.1	120.1	85.84	72.34	111.96	121.6	62.45
Merged-chr18-68499179-2	chr18	68498678	68499678	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69858.0	NM_001301372	17200.0	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	4.0	2.76	0.0	4.72	1.4	3.22	5.28	3.98	1.25
Merged-chr4-102785335-1	chr4	102784835	102785835	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144906, intron 1 of 23)	intron (NM_144906, intron 1 of 23)	25200.0	NM_001285859	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.57	3.23	1.85	2.7	7.0	0.0	1.06	2.21	5.0
Merged-chrX-53369711-1	chrX	53369211	53370211	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358456, intron 1 of 6)	intron (NM_001358456, intron 1 of 6)	848.0	NM_001358456	70380.0	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	24.03	18.43	7.4	18.22	31.26	18.49	21.12	25.2	23.11
Merged-chr19-32832285-2	chr19	32831764	32832764	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	74687.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	8.58	6.45	7.4	8.77	8.4	6.43	5.28	3.98	6.25
Merged-chr11-68509313-1	chr11	68508813	68509813	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004435, intron 1 of 19)	PB1D10|SINE|Alu	6294.0	NR_126154	104709.0	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase regulatory subunit 5	protein-coding	5.72	5.99	5.55	6.07	7.46	9.65	4.22	7.52	17.49
Merged-chr3-79299604-1	chr3	79299104	79300104	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-45772.0	NM_001142953	100233207.0	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.29	4.15	1.85	8.77	4.67	7.23	1.06	2.65	7.49
Merged-chr2-164860312-1	chr2	164859812	164860812	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-2604.0	NM_011125	18830.0	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	81.8	58.06	76.77	82.99	48.52	73.14	87.66	59.69	61.2
Merged-chr13-62952838-1	chr13	62952338	62953338	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12055.0	NM_001289926	72061.0	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	10.87	11.06	23.12	16.19	11.66	20.9	11.62	11.05	7.49
Merged-chr2-27774186-1	chr2	27773686	27774686	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	63603.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	2.29	2.3	3.7	2.02	2.8	0.0	2.11	0.0	5.0
Merged-chr7-89168758-2	chr7	89168259	89169259	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 6 of 14)	intron (NM_001360746, intron 6 of 14)	170028.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.15	4.15	3.7	8.77	2.8	2.41	0.0	0.88	1.25
Merged-chr19-32947305-2	chr19	32946813	32947813	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	189736.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	14.3	17.97	20.35	8.1	11.66	9.65	14.79	15.48	20.61
Merged-chr8-75096998-2	chr8	75096498	75097498	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010442, exon 3 of 5)	exon (NM_010442, exon 3 of 5)	3380.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	16.59	21.66	25.9	26.99	17.26	34.56	13.73	20.34	31.85
Merged-chr17-33950808-2	chr17	33950316	33951316	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019420, exon 1 of 1)	exon (NM_019420, exon 1 of 1)	672.0	NM_019420	54218.0	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	55.49	42.39	58.27	74.22	68.58	81.18	30.63	39.35	48.09
Merged-chr6-87452184-1	chr6	87451684	87452684	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	23190.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	1.72	2.76	0.0	8.1	6.53	8.84	9.51	1.33	2.5
Merged-chr2-152791153-1	chr2	152790653	152791653	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	36980.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	23.45	18.89	37.92	13.49	10.26	12.06	13.73	5.75	8.74
Merged-chr2-58700088-1	chr2	58699588	58700588	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-55096.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.0	0.92	3.7	2.02	2.8	12.86	1.06	5.75	0.0
Merged-chr17-34630970-2	chr17	34630487	34631487	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_030890, exon 2 of 4)	exon (NM_030890, exon 2 of 4)	1301.0	NM_030890	260297.0	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31|SynDIG4	proline-rich transmembrane protein 1	protein-coding	14.87	7.83	27.75	28.34	7.46	26.53	34.85	21.22	10.62
Merged-chr14-67875938-2	chr14	67875438	67876438	+	621.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 2 of 51)	intron (NM_177780, intron 2 of 51)	-16193.0	NR_105857	102465310.0		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	11.44	14.28	3.7	24.96	14.0	15.27	15.84	8.4	7.49
Merged-chr7-30492938-2	chr7	30492453	30493453	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-705.0	NM_019546	56189.0	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	4.0	3.23	0.0	1.35	0.47	4.02	2.11	3.1	2.5
Merged-chr2-51991664-1	chr2	51991164	51992164	+	621.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D11|SINE|Alu	-18456.0	NM_001141948	64685.0	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	1.14	1.84	4.62	1.35	3.73	1.61	3.17	0.88	1.25
Merged-chr17-29022497-2	chr17	29021985	29022985	+	621.458374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10175.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	4.58	5.99	3.7	6.07	1.87	3.22	7.39	2.21	3.75
Merged-chr11-3387258-3	chr11	3386754	3387754	+	621.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15850.0	NM_173053	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	2.86	3.69	0.0	4.72	1.87	8.04	3.17	0.44	2.5
Merged-chr7-64286835-2	chr7	64286340	64287340	+	621.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172742)	promoter-TSS (NM_172742)	-830.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	56.06	73.73	37.92	47.9	60.18	49.83	59.15	59.25	29.98
Merged-chr4-33396676-2	chr4	33396178	33397178	+	621.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305273, intron 12 of 15)	intron (NM_001305273, intron 12 of 15)	-41403.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	5.15	3.23	0.0	4.72	3.27	1.61	1.06	4.42	1.25
Merged-chr6-115901844-1	chr6	115901344	115902344	+	621.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 15 of 28)	intron (NM_001167763, intron 15 of 28)	-30083.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	49.2	28.57	9.25	51.28	26.12	33.76	30.63	29.63	11.24
Merged-chr6-42351567-1	chr6	42351067	42352067	+	621.333313	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_011777, exon 5 of 10)	exon (NM_011777, exon 5 of 10)	1739.0	NM_001289618	22793.0	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	94.96	122.57	81.4	62.07	42.45	40.99	58.09	72.52	73.07
Merged-chr12-52024677-1	chr12	52024177	52025177	+	621.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008159, intron 1 of 1)	intron (NM_008159, intron 1 of 1)	3386.0	NM_008159	14762.0	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	2.86	2.3	5.55	0.67	1.87	0.0	6.34	2.65	1.25
Merged-chr3-119761926-3	chr3	119761424	119762424	+	621.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	URR1A|DNA|hAT-Charlie	21464.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	6.29	6.45	5.55	7.42	5.6	3.22	7.39	4.86	5.0
Merged-chr2-153032446-1	chr2	153031946	153032946	+	621.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001011732, exon 1 of 3)	exon (NM_001011732, exon 1 of 3)	594.0	NM_001011732	228787.0	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	4.0	0.46	1.85	2.02	0.47	0.0	2.11	1.33	5.62
Merged-chr9-50593745-2	chr9	50593240	50594240	+	621.291626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	10109.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	12.59	7.37	7.4	8.1	2.8	4.82	6.34	5.75	2.5
Merged-chr12-54830757-2	chr12	54830266	54831266	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	32111.0	NM_007688	12632.0	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	3.43	3.23	5.55	4.05	2.33	1.61	3.17	0.0	3.75
Merged-chr3-96066252-2	chr3	96065755	96066755	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7800.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	5.72	3.69	0.0	7.42	2.33	4.82	5.28	0.44	2.5
Merged-chr15-58798225-2	chr15	58797717	58798717	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175212, intron 1 of 6)	intron (NM_175212, intron 1 of 6)	25210.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	31.46	29.03	39.77	20.24	18.19	22.51	51.75	34.49	21.86
Merged-chr12-3844554-1	chr12	3844054	3845054	+	621.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007872, intron 2 of 22)	intron (NM_007872, intron 2 of 22)	17690.0	NR_045884	100038522.0	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	17.16	7.83	7.4	8.77	12.6	8.04	17.96	6.63	6.25
Merged-chr8-3677426-3	chr8	3676936	3677936	+	621.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025701, intron 1 of 1)	MTEb|LTR|ERVL-MaLR	959.0	NM_025701	66682.0	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	13.73	17.51	4.62	6.07	11.2	8.84	9.51	7.96	8.74
Merged-chr16-24361116-2	chr16	24360612	24361612	+	621.099976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32238.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	10.3	7.83	7.4	8.1	2.8	1.61	9.51	9.29	12.49
Merged-chr6-43303991-1	chr6	43303491	43304491	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_130869, exon 9 of 9)	exon (NM_130869, exon 9 of 9)	5563.0	NM_130869	18291.0	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	2.86	2.76	3.7	2.7	5.13	1.61	3.17	2.21	5.0
Merged-chr8-3337167-1	chr8	3336667	3337667	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-16248.0	NM_001033378	319493.0	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	5.72	0.0	7.4	2.02	1.4	1.61	3.17	0.0	7.49
Merged-chr2-155295724-1	chr2	155295224	155296224	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001004721, intron 10 of 11)	intron (NM_001004721, intron 10 of 11)	19360.0	NR_046364	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	8.58	9.68	13.87	5.4	1.87	8.04	8.45	5.31	6.87
Merged-chr4-128668157-1	chr4	128667657	128668657	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	13455.0	NM_001195130	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	122.99	106.44	76.77	103.91	75.57	78.77	77.1	74.28	66.82
Merged-chr2-128765821-1	chr2	128765321	128766321	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	MIRb|SINE|MIR	-52482.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	13.73	9.68	19.42	10.8	10.73	30.54	14.79	11.5	15.61
Merged-chr8-14823438-1	chr8	14822938	14823938	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172910, intron 10 of 15)	intron (NM_172910, intron 10 of 15)	-65098.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	1.72	2.3	3.7	3.37	3.27	11.25	19.01	13.27	7.49
Merged-chr17-62883027-1	chr17	62882527	62883527	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1710.0	NM_010109	13640.0	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.57	0.92	6.47	1.35	0.47	4.82	0.0	2.21	2.5
Merged-chr12-12412863-1	chr12	12412363	12413363	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20388.0	NR_045829	70858.0	Mm.410838	NR_045829	ENSMUSG00000114136	4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	4.0	3.23	0.0	4.72	0.0	6.43	0.0	0.44	2.5
Merged-chr8-35424058-1	chr8	35423558	35424558	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48317.0	NM_177741	244416.0	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	2.86	1.38	5.55	5.4	1.87	4.82	3.17	3.98	0.0
Merged-chr8-14676587-1	chr8	14676087	14677087	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 4 of 15)	B4|SINE|B4	-211949.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	16.02	16.59	9.25	37.11	15.86	34.56	35.91	18.57	14.36
Merged-chr1-72641192-1	chr1	72640692	72641692	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	57941.0	NM_018817	54380.0	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	1.72	2.76	1.85	3.37	3.27	1.61	9.51	4.42	11.87
Merged-chr3-157876885-1	chr3	157876385	157877385	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48178.0	NM_145953	107869.0	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	3.43	4.15	1.85	4.05	4.2	1.61	3.17	5.31	1.25
Merged-chrX-56607568-1	chrX	56607068	56608068	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2213.0	NM_001358861	236794.0	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	5.72	3.23	3.7	2.7	3.73	12.86	3.17	0.44	3.75
Merged-chrX-109139446-1	chrX	109138946	109139946	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	44039.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	28.6	28.57	12.95	24.96	19.13	28.13	23.24	21.67	18.74
Merged-chr13-12680802-2	chr13	12680303	12681303	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30408.0	NR_003568	664862.0	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik	G protein-coupled receptor 137B, pseudogene	pseudo	3.43	3.69	5.55	7.42	2.8	6.43	9.51	3.54	5.0
Merged-chr1-58364206-1	chr1	58363706	58364706	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001008419, intron 34 of 35)	intron (NM_001008419, intron 34 of 35)	-28930.0	NM_025824	66882.0	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	7.44	13.36	14.8	8.77	6.53	3.22	40.14	42.45	25.61
Merged-chr16-22616000-1	chr16	22615500	22616500	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 2 of 23)	MIRc|SINE|MIR	10674.0	NR_105781	102465962.0		NR_105781	ENSMUSG00000098448	Mir6362	Gm27812|mmu-mir-6362	microRNA 6362	ncRNA	0.57	2.3	5.55	0.0	2.33	2.41	2.11	3.1	1.87
Merged-chr2-170451108-1	chr2	170450608	170451608	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23263.0	NM_029815	76960.0	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	2.29	2.3	0.0	2.7	0.47	0.0	0.0	3.54	0.0
Merged-chr5-114824303-3	chr5	114823810	114824810	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181075)	promoter-TSS (NM_181075)	-842.0	NM_181075	330173.0	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	9.15	10.6	5.55	10.12	2.8	4.82	13.73	6.19	13.74
Merged-chr11-120064109-1	chr11	120063609	120064609	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009734)	TTS (NM_009734)	-16964.0	NM_007377	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	25.17	18.43	35.15	17.54	11.66	27.33	42.25	23.43	19.98
Merged-chr10-60191970-1	chr10	60191470	60192470	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016803, intron 2 of 3)	intron (NM_016803, intron 2 of 3)	27290.0	NM_016803	53374.0	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	6.29	1.84	0.0	2.02	6.53	0.8	4.22	0.44	3.12
Merged-chr5-100506027-2	chr5	100505545	100506545	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-5406.0	NM_001359914	231506.0	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	10.3	8.29	18.5	19.57	6.06	17.68	21.12	24.76	7.49
Merged-chr3-8950669-1	chr3	8950169	8951169	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009412, intron 2 of 5)	RMER15|LTR|ERVL	13477.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	3.43	1.84	0.92	3.37	3.27	3.22	2.11	1.77	1.25
Merged-chr8-83772832-1	chr8	83772332	83773332	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31521.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	13.16	8.29	6.47	31.71	17.73	28.13	12.67	9.73	16.24
Merged-chr19-57436644-1	chr19	57436144	57437144	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16262.0	NM_029839	72133.0	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	6.86	6.91	2.77	9.45	5.13	6.43	1.06	2.65	5.0
Merged-chr1-24587478-1	chr1	24586978	24587978	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007733)	promoter-TSS (NM_007733)	-41.0	NM_007733	12823.0	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	2.29	1.84	1.85	0.67	2.33	0.0	3.17	1.77	1.25
Merged-chr14-20702053-1	chr14	20701553	20702553	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025366)	promoter-TSS (NM_025366)	-974.0	NM_025366	66121.0	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	76.08	76.03	40.7	96.48	74.17	47.42	99.28	88.88	38.1
Merged-chr13-97769942-1	chr13	97769442	97770442	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18830.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	1.72	0.92	1.85	4.05	6.53	8.04	3.17	2.21	3.75
Merged-chr18-62058282-1	chr18	62057782	62058782	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	105207.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	24.6	26.26	13.87	24.96	13.53	21.7	36.97	25.65	22.48
Merged-chrX-151522336-1	chrX	151521836	151522836	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113354, intron 1 of 21)	intron (NM_001113354, intron 1 of 21)	1664.0	NM_001113354	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	14.3	5.99	10.17	10.12	7.46	7.23	10.56	9.29	6.25
Merged-chr11-114967774-1	chr11	114967274	114968274	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7357.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	63.5	83.4	66.6	49.93	47.58	79.58	64.43	84.01	65.58
Merged-chr14-54764982-1	chr14	54764482	54765482	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	16904.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	10.87	11.06	10.17	23.62	8.86	8.04	8.45	1.33	11.87
Merged-chr11-49869994-1	chr11	49869494	49870494	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016961, intron 5 of 11)	intron (NM_016961, intron 5 of 11)	23243.0	NM_016961	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.72	1.84	5.55	4.72	1.4	2.41	1.06	0.88	6.25
Merged-chr10-7203979-1	chr10	7203479	7204479	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	8258.0	NM_172546	215748.0	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	2.29	8.75	0.0	5.4	6.53	7.23	17.96	6.19	9.37
Merged-chr14-54407432-1	chr14	54406932	54407932	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	intron (NM_011405, intron 4 of 11)	2040.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	46.91	65.43	37.0	56.0	79.31	98.06	61.26	53.94	22.48
Merged-chr8-56295338-2	chr8	56294828	56295828	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 2 of 6)	intron (NM_008278, intron 2 of 6)	776.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	104.69	132.71	62.9	82.99	71.84	70.73	92.94	149.89	79.32
Merged-chr11-104289847-1	chr11	104289347	104290347	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038609, intron 3 of 11)	intron (NM_001038609, intron 3 of 11)	58411.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	6.29	2.76	0.0	4.72	1.4	3.22	7.39	2.65	6.25
Merged-chr13-78195118-1	chr13	78194618	78195618	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010151, intron 2 of 2)	CpG	1331.0	NM_001347538	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	6.86	0.0	0.92	0.0	4.67	0.8	1.06	0.44	0.0
Merged-chr7-16307613-1	chr7	16307113	16308113	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-1970.0	NM_133234	170770.0	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	13.73	6.45	3.7	7.42	0.47	4.82	14.79	4.42	6.87
Merged-chr4-134287748-1	chr4	134287248	134288248	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	98.0	NM_146156	230809.0	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	58.35	58.52	60.12	45.88	70.44	110.12	91.89	104.35	78.07
Merged-chr3-69117392-1	chr3	69116892	69117892	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008467, intron 1 of 16)	intron (NM_008467, intron 1 of 16)	9700.0	NM_008467	16649.0	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	20.59	35.02	22.2	16.87	21.46	22.51	26.4	24.32	13.12
Merged-chr18-84852041-1	chr18	84851541	84852541	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348159, intron 1 of 5)	(TTTC)n|Simple_repeat|Simple_repeat	703.0	NM_001348159	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	81.23	95.38	66.6	98.51	74.17	96.45	69.71	89.32	39.97
Merged-chr16-38225022-1	chr16	38224522	38225522	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 10 of 11)	MTE2a|LTR|ERVL-MaLR	69802.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	10.3	9.22	5.55	10.8	5.6	4.82	10.56	9.73	11.24
Merged-chr2-105674548-1	chr2	105674048	105675048	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001244198, intron 1 of 12)	intron (NM_001244198, intron 1 of 12)	-1196.0	NM_001244200	18508.0	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	6.29	2.3	3.7	3.37	1.87	3.22	2.11	2.21	2.5
Merged-chr11-48924040-2	chr11	48923513	48924513	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045540, intron 1 of 2)	intron (NM_001045540, intron 1 of 2)	3169.0	NM_001045540	620913.0	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1	predicted gene 12185	protein-coding	36.04	19.81	11.1	20.24	12.13	21.7	20.07	18.13	12.49
Merged-chr11-82915157-1	chr11	82914657	82915657	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178680, intron 5 of 19)	intron (NM_178680, intron 5 of 19)	3904.0	NM_178680	217012.0	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	3.43	3.23	0.0	3.37	2.8	8.84	4.22	1.33	5.0
Merged-chr5-30650004-1	chr5	30649504	30650504	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	intron (NM_175675, intron 1 of 5)	2065.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	75.51	108.28	88.8	109.98	121.29	108.51	138.36	118.5	71.2
Merged-chr3-96487865-1	chr3	96487365	96488365	+	621.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-35559.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	2.86	2.3	0.0	3.37	6.06	3.22	127.8	186.59	88.68
Merged-chr19-57643112-1	chr19	57642612	57643612	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 5 of 28)	intron (NM_181415, intron 5 of 28)	32078.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	1.14	1.84	1.85	3.37	2.8	0.8	2.11	2.21	3.75
Merged-chr12-75667121-1	chr12	75666621	75667621	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	intron (NM_028203, intron 1 of 1)	2416.0	NM_028203	72338.0	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	2.86	3.23	7.4	4.05	2.33	6.43	1.06	2.21	5.0
Merged-chr9-7836411-1	chr9	7835911	7836911	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007465, intron 1 of 7)	intron (NM_007465, intron 1 of 7)	395.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	366.69	501.33	246.96	323.19	522.96	249.17	385.51	544.31	187.98
Merged-chr18-36541576-1	chr18	36541076	36542076	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271547, intron 19 of 19)	intron (NM_001271547, intron 19 of 19)	13424.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	5.15	3.69	3.7	5.4	3.73	1.61	4.22	4.42	7.49
Merged-chr4-150824255-1	chr4	150823755	150824755	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29541.0	NM_001356323	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	3.43	0.92	3.7	6.07	1.4	3.22	1.06	0.88	1.87
Merged-chr14-16367155-1	chr14	16366655	16367655	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	B3|SINE|B2	1949.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	10.3	12.9	5.55	12.82	7.0	12.86	9.51	5.31	2.5
Merged-chr5-65429456-1	chr5	65428956	65429956	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009466, intron 1 of 11)	intron (NM_009466, intron 1 of 11)	6386.0	NM_009466	22235.0	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	8.01	4.61	1.85	8.1	1.4	0.0	2.11	4.42	0.0
Merged-chr1-127827502-1	chr1	127827002	127828002	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011737, intron 6 of 9)	intron (NM_011737, intron 6 of 9)	12788.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	3.43	5.07	6.47	5.4	1.87	0.8	4.22	7.07	3.12
Merged-chr16-14293045-1	chr16	14292545	14293545	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1637.0	NM_013607	17880.0	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	1.72	1.84	3.7	3.37	4.67	1.61	2.11	1.33	1.25
Merged-chr12-4717583-1	chr12	4717083	4718083	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029107, intron 7 of 7)	intron (NM_029107, intron 7 of 7)	20800.0	NM_029107	74855.0	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	8.58	6.45	3.7	4.72	3.27	3.22	4.22	2.21	2.5
Merged-chr14-64747353-1	chr14	64746853	64747853	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081177, intron 17 of 39)	CT-rich|Low_complexity|Low_complexity	94822.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	10.3	1.84	12.95	4.05	2.8	8.04	10.56	3.98	5.0
Merged-chr5-113787124-1	chr5	113786624	113787624	+	621.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13228.0	NM_146162	231633.0	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.57	3.23	0.0	4.05	0.47	3.22	2.11	2.21	0.0
Merged-chr11-54927979-1	chr11	54927479	54928479	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271456, intron 9 of 18)	intron (NM_001271456, intron 9 of 18)	25125.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.72	3.69	1.85	5.4	1.87	3.22	4.22	0.44	0.62
Merged-chrX-9450136-1	chrX	9449636	9450636	+	621.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007807, intron 7 of 12)	intron (NM_007807, intron 7 of 12)	19188.0	NM_007807	13058.0	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	4.58	11.98	8.32	19.57	12.6	16.08	13.73	6.19	10.62
Merged-chr1-121155543-2	chr1	121155042	121156042	+	620.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68137.0	NR_110450	98452.0	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	13.16	6.91	14.8	0.67	2.33	2.41	2.11	1.77	3.75
Merged-chr2-73534890-2	chr2	73534372	73535372	+	620.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-5385.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	9.72	5.07	7.4	6.75	4.2	6.43	6.34	3.98	3.12
Merged-chr7-55956982-3	chr7	55956488	55957488	+	620.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023647, intron 1 of 6)	MTD|LTR|ERVL-MaLR	5505.0	NM_001256133	93790.0	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	59.49	69.58	73.07	61.4	45.72	56.27	72.88	106.12	60.58
Merged-chr3-95665289-2	chr3	95664786	95665786	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	6565.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	64.64	36.86	59.2	47.23	12.13	46.62	50.7	26.53	49.34
Merged-chr1-52166875-1	chr1	52166375	52167375	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081081, intron 17 of 17)	intron (NM_001081081, intron 17 of 17)	47253.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	8.01	4.15	11.1	3.37	3.27	8.04	1.06	3.54	7.49
Merged-chr11-104319623-2	chr11	104319125	104320125	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038609, intron 9 of 11)	intron (NM_001038609, intron 9 of 11)	88189.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	4.58	5.07	9.25	2.7	2.8	3.22	3.17	0.88	2.5
Merged-chr11-114960529-2	chr11	114960003	114961003	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199225)	promoter-TSS (NM_199225)	-86.0	NM_199225	387565.0	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	13.16	7.37	13.87	16.19	7.0	16.08	11.62	9.29	10.62
Merged-chr5-27995360-2	chr5	27994872	27995872	+	620.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76040.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	9.72	1.38	4.62	4.05	2.33	4.02	2.11	0.44	2.5
Merged-chr15-98805533-2	chr15	98805041	98806041	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001013741, exon 2 of 2)	exon (NM_001013741, exon 2 of 2)	2384.0	NM_001013741	13199.0	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	5.72	1.84	3.7	11.47	0.93	8.04	3.17	0.44	3.12
Merged-chr1-88274821-2	chr1	88274322	88275322	+	620.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	2735.0	NM_172505	212427.0	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	6.29	20.27	9.25	11.47	13.06	27.33	10.56	10.61	27.48
Merged-chr4-141431250-1	chr4	141430750	141431750	+	620.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4855.0	NM_001033374	277744.0	Mm.33952	NM_001033374	ENSMUSG00000070637	Srarp	Gm694	steroid receptor associated and regulated protein	protein-coding	3.43	3.23	0.0	2.7	2.33	4.82	2.11	1.33	6.25
Merged-chr5-77464991-1	chr5	77464491	77465491	+	620.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131050)	promoter-TSS (NR_131050)	-497.0	NR_131050	69370.0	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	1.72	2.3	1.85	2.7	0.93	3.22	4.22	1.77	4.37
Merged-chr3-141862987-2	chr3	141862464	141863464	+	620.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355043, intron 6 of 10)	intron (NM_001355043, intron 6 of 10)	68456.0	NM_001355043	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.57	4.15	5.55	2.02	1.87	4.82	4.22	7.52	2.5
Merged-chr18-54986592-1	chr18	54986092	54987092	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	3588.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	168.18	189.84	52.72	170.03	135.29	69.93	88.72	91.09	60.58
Merged-chr1-91269174-2	chr1	91268672	91269672	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355764, intron 5 of 10)	intron (NM_001355764, intron 5 of 10)	18606.0	NM_001355764	67921.0	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	20.59	16.59	12.02	5.4	8.4	14.47	10.56	6.19	3.75
Merged-chr9-63129975-1	chr9	63129475	63130475	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17005.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	4.58	1.84	4.62	8.77	5.13	3.22	5.28	1.33	2.5
Merged-chr14-77783424-1	chr14	77782924	77783924	+	620.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15544.0	NM_001033440	380920.0	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	2.86	2.76	3.7	4.72	3.27	4.02	5.28	0.44	5.0
Merged-chr5-136202049-1	chr5	136201549	136202549	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3095.0	NM_025774	66801.0	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	1.72	1.38	0.0	3.37	0.47	0.8	1.06	3.54	2.5
Merged-chr13-75796218-2	chr13	75795717	75796717	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43668.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.72	4.61	15.72	5.4	8.86	11.25	15.84	9.73	16.86
Merged-chr3-109340030-2	chr3	109339518	109340518	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020505)	promoter-TSS (NM_020505)	-665.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	27.46	19.81	23.12	14.84	14.93	15.27	25.35	24.32	14.36
Merged-chr10-13913909-2	chr10	13913416	13914416	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	42636.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	3.43	1.84	1.85	0.67	3.27	1.61	1.06	1.77	5.0
Merged-chr16-65394630-1	chr16	65394130	65395130	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125999.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	7.44	2.76	6.47	6.07	6.06	0.0	10.56	6.63	2.5
Merged-chr4-119962956-1	chr4	119962456	119963456	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	148278.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	10.3	6.91	3.7	14.17	11.2	12.86	8.45	4.42	3.12
Merged-chr9-47739706-1	chr9	47739206	47740206	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	78502.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	27.46	31.33	42.55	42.51	33.12	28.94	27.46	31.84	18.74
Merged-chr14-32888678-1	chr14	32888178	32889178	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178791, intron 3 of 7)	intron (NM_178791, intron 3 of 7)	31922.0	NM_001361602	320736.0	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	8.58	1.84	1.85	4.05	6.06	3.22	0.0	0.0	7.49
Merged-chr2-33176677-1	chr2	33176177	33177177	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290570, intron 7 of 16)	MIR3|SINE|MIR	-39284.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	4.0	4.15	7.4	7.42	4.67	8.04	5.28	0.44	3.75
Merged-chr10-34233701-1	chr10	34233201	34234201	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-26150.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	27.46	15.67	12.02	20.92	9.8	12.06	27.46	22.55	9.99
Merged-chr4-120975160-1	chr4	120974660	120975660	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133716, intron 6 of 9)	intron (NM_133716, intron 6 of 9)	-1838.0	NR_105982	102465614.0		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	40.62	35.02	46.25	20.92	25.19	22.51	14.79	11.5	14.36
Merged-chr2-164009220-1	chr2	164008720	164009720	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018753, intron 1 of 5)	intron (NM_018753, intron 1 of 5)	14023.0	NM_018753	54401.0	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	30.89	35.48	24.97	41.16	37.32	24.11	51.75	24.32	16.24
Merged-chr19-44404131-1	chr19	44403631	44404631	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009127, intron 2 of 5)	MIRc|SINE|MIR	3578.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	7.44	10.6	2.77	9.45	9.33	4.82	14.79	7.96	12.49
Merged-chr2-6258181-1	chr2	6257681	6258681	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-45187.0	NM_024208	67856.0	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	33.75	44.7	29.6	56.68	54.58	69.13	38.02	43.33	21.23
Merged-chr12-117478124-2	chr12	117477630	117478630	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38349.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	20.59	20.74	5.55	25.64	7.0	12.86	16.9	17.24	13.74
Merged-chr17-84182922-2	chr17	84182409	84183409	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5038.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	78.94	99.07	95.27	68.82	95.17	131.82	77.1	101.26	83.69
Merged-chr1-74788781-2	chr1	74788296	74789296	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3223.0	NM_009518	22409.0	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	1.72	1.38	9.25	4.05	1.4	1.61	3.17	1.33	0.0
Merged-chr12-3791347-2	chr12	3790858	3791858	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15622.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	25.74	27.19	32.37	22.27	22.86	49.83	60.2	44.66	44.34
Merged-chr18-68859809-1	chr18	68859309	68860309	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91719.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	2.29	2.76	9.25	6.07	4.2	2.41	3.17	1.77	1.25
Merged-chr1-51931545-2	chr1	51931030	51932030	+	620.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15552.0	NM_010863	17912.0	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	30.89	28.11	35.15	22.27	16.33	30.54	22.18	18.13	24.36
Merged-chr4-97764802-2	chr4	97764292	97765292	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-12834.0	NM_001122953	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.29	6.91	9.25	10.12	3.27	4.82	4.22	3.1	3.75
Merged-chr3-35931494-2	chr3	35931003	35932003	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205361, intron 1 of 6)	intron (NM_001205361, intron 1 of 6)	831.0	NM_001205362	114893.0	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	34.32	31.33	30.52	51.95	37.32	47.42	55.98	61.9	25.61
Merged-chr11-54535141-2	chr11	54534622	54535622	+	620.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 1 of 28)	intron (NM_001252494, intron 1 of 28)	12277.0	NM_001252496	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	8.01	3.69	6.47	5.4	2.8	5.63	7.39	5.75	4.37
Merged-chr1-82797246-2	chr1	82796751	82797751	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-28795.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	19.45	15.67	12.95	31.71	24.26	16.88	21.12	22.55	20.61
Merged-chr2-125777188-2	chr2	125776687	125777687	+	620.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177608, intron 1 of 17)	intron (NM_177608, intron 1 of 17)	5683.0	NM_177608	70354.0	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	19.45	28.11	21.27	12.14	10.73	7.23	33.8	37.14	9.99
Merged-chr16-91905406-2	chr16	91904954	91905954	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010587, exon 34 of 39)	exon (NM_010587, exon 34 of 39)	26176.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	13.16	15.67	0.0	15.52	12.6	22.51	12.67	17.69	13.12
Merged-chr16-38130735-2	chr16	38130240	38131240	+	620.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-41480.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	136.72	157.59	66.6	124.82	95.63	75.56	80.27	96.39	81.81
Merged-chr10-121585382-1	chr10	121584882	121585882	+	620.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019786, intron 1 of 20)	intron (NM_019786, intron 1 of 20)	1412.0	NM_019786	56480.0	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	68.65	67.74	48.1	85.01	39.65	41.8	61.26	72.96	41.84
Merged-chr11-100525127-3	chr11	100524609	100525609	+	620.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134037, intron 1 of 27)	intron (NM_134037, intron 1 of 27)	2891.0	NM_134037	104112.0	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	11.44	8.75	7.4	18.89	6.53	12.06	20.07	7.52	10.62
Merged-chr1-173878074-1	chr1	173877574	173878574	+	620.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	Lx8b|LINE|L1	2113.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	49.77	95.38	42.55	146.41	118.96	94.85	70.76	77.38	33.1
Merged-chr19-46131827-2	chr19	46131331	46132331	+	620.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007703)	promoter-TSS (NM_007703)	-68.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	4.58	3.69	9.25	4.05	0.47	2.41	5.28	4.86	2.5
Merged-chr2-164470381-2	chr2	164469910	164470910	+	620.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001271575, exon 5 of 5)	3' UTR (NM_001271575, exon 5 of 5)	3314.0	NM_001271575	73603.0	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	1.72	7.83	10.17	6.75	8.4	3.22	1.06	0.88	3.75
Merged-chr7-101679779-2	chr7	101679263	101680263	+	620.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009191, intron 2 of 15)	intron (NM_009191, intron 2 of 15)	15995.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	4.0	1.38	2.77	2.02	4.2	3.22	1.06	0.44	0.0
Merged-chr6-134016422-3	chr6	134015909	134016909	+	620.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-19291.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	25.74	18.43	7.4	25.64	12.13	20.09	21.12	19.46	22.48
Merged-chr5-124352374-2	chr5	124351878	124352878	+	620.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	2250.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	13.73	8.75	3.7	7.42	4.2	8.84	6.34	1.77	1.25
Merged-chr17-24548593-2	chr17	24548097	24549097	+	620.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1353.0	NM_013630	18763.0	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystin 1, transient receptor poteintial channel interacting	protein-coding	29.17	18.43	5.55	36.43	28.92	43.4	47.53	42.01	43.09
Merged-chr4-33253315-3	chr4	33252809	33253809	+	620.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4522.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	7.44	6.45	2.77	4.72	1.87	3.22	8.45	5.31	4.37
Merged-chr2-166035847-1	chr2	166035347	166036347	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 2 of 22)	intron (NM_008679, intron 2 of 22)	43210.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	23.45	22.12	22.2	19.57	14.46	15.27	26.4	9.29	9.37
Merged-chr15-4728409-1	chr15	4727909	4728909	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	intron (NM_016704, intron 1 of 15)	1199.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	40.62	55.29	32.37	58.7	64.84	69.93	107.73	109.22	62.45
Merged-chr10-22007986-1	chr10	22007486	22008486	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13320.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.86	1.38	1.85	8.77	1.87	4.82	11.62	11.05	3.12
Merged-chr5-145179764-1	chr5	145179264	145180264	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001291249, intron 7 of 7)	IMPB_01|Satellite|Satellite	11828.0	NM_020582	57423.0	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	35.47	20.27	39.77	31.71	20.99	29.74	31.69	28.3	17.49
Merged-chr11-77317951-1	chr11	77317451	77318451	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	MLT2B3|LTR|ERVL	-30329.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	9.15	4.61	3.7	8.77	6.53	6.43	10.56	7.52	7.49
Merged-chrX-7851089-1	chrX	7850589	7851589	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 2 of 9)	MTEa-int|LTR|ERVL-MaLR	9007.0	NM_001290537	54644.0	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	5.15	4.15	4.62	2.7	2.33	8.04	3.17	1.77	8.12
Merged-chr11-26129232-1	chr11	26128732	26129732	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	BGLII|LTR|ERVK	-73008.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	2.86	5.99	0.0	15.52	16.79	12.86	6.34	8.84	8.74
Merged-chr3-55452114-1	chr3	55451614	55452614	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357475, intron 5 of 16)	intron (NM_001357475, intron 5 of 16)	-9614.0	NM_001195539	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	2.86	0.46	3.7	4.05	0.93	7.23	1.06	0.44	1.25
Merged-chr1-105781213-2	chr1	105780773	105781773	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 1 of 9)	intron (NM_009399, intron 1 of 9)	550.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	73.22	87.09	53.65	85.01	79.31	86.01	96.11	103.91	89.31
Merged-chr14-103899354-1	chr14	103898854	103899854	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54878.0	NM_001136061	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	4.58	3.23	2.77	10.12	7.46	3.22	4.22	7.07	0.0
Merged-chr7-132308517-1	chr7	132308017	132309017	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029935, intron 1 of 7)	URR1A|DNA|hAT-Charlie	-7147.0	NR_028578	100043682.0	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	-	predicted gene 10584	ncRNA	10.3	19.35	23.12	10.12	4.67	6.43	11.62	6.19	13.12
Merged-chr4-134946173-1	chr4	134945673	134946673	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	15193.0	NM_026780	68592.0	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	3.43	7.37	3.7	6.07	5.13	9.65	7.39	8.84	5.0
Merged-chr4-129491913-1	chr4	129491413	129492413	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001085491)	TTS (NM_001085491)	723.0	NM_001085491	68233.0	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	8.01	3.23	1.85	8.1	6.06	0.0	5.28	6.63	1.25
Merged-chr15-30686771-1	chr15	30686271	30687271	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	(TG)n|Simple_repeat|Simple_repeat	-352355.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	2.86	8.29	1.85	2.7	10.26	10.45	5.28	3.54	6.25
Merged-chr10-8880388-1	chr10	8879888	8880888	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175155, intron 1 of 19)	(TG)n|Simple_repeat|Simple_repeat	5682.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	68.07	66.35	48.1	51.28	36.39	55.46	46.47	61.46	35.6
Merged-chr14-55490629-1	chr14	55490129	55491129	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_155103)	promoter-TSS (NR_155103)	-22.0	NR_155103	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	3.43	5.53	3.7	1.35	1.87	1.61	5.28	2.65	3.75
Merged-chr1-93654171-1	chr1	93653671	93654671	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-18444.0	NM_021537	59041.0	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	8.58	4.61	4.62	6.75	5.6	13.66	6.34	2.65	8.74
Merged-chr11-70608940-1	chr11	70608440	70609440	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001045959, exon 19 of 32)	exon (NM_001045959, exon 19 of 32)	-6954.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	4.58	4.15	1.85	3.37	1.87	3.22	0.0	0.88	3.12
Merged-chr11-69364698-1	chr11	69364198	69365198	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146019, exon 2 of 40)	exon (NM_146019, exon 2 of 40)	4728.0	NM_146019	216848.0	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	62.93	45.16	70.3	52.63	52.25	60.28	60.2	52.62	49.96
Merged-chr9-21309330-1	chr9	21308830	21309830	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110300, intron 3 of 10)	intron (NM_001110300, intron 3 of 10)	3003.0	NM_001110300	11768.0	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	4.0	1.84	0.0	4.05	3.27	10.45	3.17	0.0	3.75
Merged-chr8-125815830-1	chr8	125815330	125816330	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175561, exon 21 of 34)	exon (NM_175561, exon 21 of 34)	81627.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	1.14	1.84	1.85	1.35	3.27	4.82	4.22	0.0	3.75
Merged-chr17-71531696-1	chr17	71531196	71532196	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4839.0	NM_023294	67052.0	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.57	0.92	3.7	2.02	2.8	5.63	3.17	14.15	5.62
Merged-chr11-98782513-4	chr11	98781974	98782974	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7097.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	97.25	70.04	53.65	108.63	75.57	103.69	101.39	95.95	79.32
Merged-chr13-6060098-1	chr13	6059598	6060598	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	198609.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	4.0	8.75	3.7	5.4	3.73	8.04	3.17	4.42	1.87
Merged-chr2-53007384-1	chr2	53006884	53007884	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	149516.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.58	6.45	1.85	4.72	7.46	4.82	4.22	2.21	1.25
Merged-chr3-18369052-1	chr3	18368552	18369552	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	111425.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	2.29	5.53	7.4	5.4	4.67	3.22	5.28	4.86	5.62
Merged-chr16-52093103-2	chr16	52092619	52093619	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	61570.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	18.31	17.05	9.25	13.49	20.06	8.04	28.52	24.76	20.61
Merged-chr9-95547184-1	chr9	95546684	95547684	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12633.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	23.45	11.52	8.32	29.69	11.2	14.47	29.57	19.01	5.0
Merged-chr5-137779288-1	chr5	137778788	137779788	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027242, intron 1 of 3)	CpG	384.0	NM_027242	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	50.91	47.0	70.3	35.76	42.92	71.54	49.64	57.92	63.08
Merged-chr15-80007252-1	chr15	80006752	80007752	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	MTD|LTR|ERVL-MaLR	7556.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	9.15	5.99	7.4	16.19	10.73	25.72	8.45	3.1	1.87
Merged-chr8-90914163-1	chr8	90913663	90914663	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-18086.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	16.59	5.53	11.1	16.19	10.73	11.25	14.79	7.07	9.37
Merged-chr15-58244317-1	chr15	58243817	58244817	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-29425.0	NM_026346	67731.0	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	6.86	8.29	0.0	9.45	8.4	11.25	15.84	7.52	8.12
Merged-chr3-9341706-1	chr3	9341206	9342206	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61372.0	NR_015499	320088.0	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	22.31	33.18	38.85	47.23	33.12	40.99	1.06	6.19	5.0
Merged-chr15-74999892-1	chr15	74999392	75000392	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1861.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	2.86	0.92	1.85	2.7	1.87	4.82	55.98	58.81	1.25
Merged-chr18-62980627-2	chr18	62980121	62981121	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028017, intron 2 of 11)	intron (NM_028017, intron 2 of 11)	2705.0	NM_028017	108123.0	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	22.88	41.01	58.27	28.34	16.79	12.86	38.02	41.12	19.98
Merged-chr8-33902628-1	chr8	33902128	33903128	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	27235.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	2.86	1.38	1.85	2.02	0.0	0.8	14.79	9.29	11.87
Merged-chr2-38072248-1	chr2	38071748	38072748	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146122, intron 5 of 21)	intron (NM_146122, intron 5 of 21)	215136.0	NM_146122	227801.0	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	4.0	4.61	2.77	2.7	3.73	8.04	5.28	7.07	6.25
Merged-chr19-59076335-2	chr19	59075834	59076834	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_175172)	promoter-TSS (NM_175172)	-265.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	16.59	18.89	11.1	20.92	7.46	5.63	6.34	11.94	9.37
Merged-chr4-59444204-1	chr4	59443704	59444704	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-5571.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	6.86	15.21	15.72	9.45	6.53	9.65	6.34	2.21	2.5
Merged-chr11-68654193-1	chr11	68653693	68654693	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA7|LINE|L1	-37722.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	10.87	11.98	1.85	24.29	9.8	20.9	16.9	10.61	15.61
Merged-chr16-95743198-1	chr16	95742698	95743698	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	40791.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.58	5.99	9.25	4.72	2.33	0.8	5.28	3.1	5.0
Merged-chr16-43948024-1	chr16	43947524	43948524	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	MER103C|DNA|hAT-Charlie	31026.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	18.88	21.2	12.95	23.62	29.86	22.51	17.96	14.59	14.36
Merged-chr16-11708988-1	chr16	11708488	11709488	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-70714.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	24.03	30.87	57.35	22.94	34.06	32.96	33.8	44.66	41.84
Merged-chr16-21815079-2	chr16	21814551	21815551	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4c|LINE|L1	20704.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	32.61	29.95	24.05	37.11	21.46	34.56	25.35	32.72	14.99
Merged-chr15-74673156-1	chr15	74672656	74673656	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001276684)	promoter-TSS (NM_001276684)	-586.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	42.33	38.25	67.52	43.18	34.52	57.07	31.69	39.8	36.22
Merged-chr19-3861305-1	chr19	3860805	3861805	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001271496, intron 1 of 11)	(TTTTG)n|Simple_repeat|Simple_repeat	9532.0	NR_073190	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	48.05	33.18	55.5	31.04	31.26	56.27	57.03	46.43	35.6
Merged-chr16-45630531-2	chr16	45630046	45631046	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145389, intron 4 of 5)	intron (NM_145389, intron 4 of 5)	20106.0	NM_001159297	14525.0	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	2.86	1.84	1.85	2.02	1.4	3.22	0.0	0.0	2.5
Merged-chr10-100490976-1	chr10	100490476	100491476	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146009, intron 4 of 52)	intron (NM_146009, intron 4 of 52)	2687.0	NM_146009	216274.0	Mm.229114	NM_146009	ENSMUSG00000019971	Cep290	BC004690|Nphp6|b2b1454Clo|b2b1752Clo	centrosomal protein 290	protein-coding	16.02	9.22	7.4	6.07	4.67	8.84	5.28	12.82	8.12
Merged-chrX-162941464-1	chrX	162940964	162941964	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358398, intron 11 of 18)	intron (NM_001358398, intron 11 of 18)	23135.0	NM_009789	12309.0	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	3.43	5.07	7.4	11.47	5.13	2.41	3.17	3.98	7.49
Merged-chr3-129590941-1	chr3	129590441	129591441	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130450, intron 2 of 4)	intron (NM_130450, intron 2 of 4)	-58553.0	NR_153368	102639747.0	Mm.393257	NR_153368		Gm35986	-	predicted gene, 35986	ncRNA	13.16	10.6	1.85	10.12	16.79	8.04	3.17	4.86	3.75
Merged-chr13-64120951-1	chr13	64120451	64121451	+	620.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 2 of 11)	intron (NM_001001321, intron 2 of 11)	8379.0	NM_001001321	70484.0	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	2.29	10.14	3.7	10.12	5.6	4.82	19.01	7.07	8.74
Merged-chr6-24531207-1	chr6	24530707	24531707	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080847, intron 1 of 9)	intron (NM_080847, intron 1 of 9)	3063.0	NM_080847	78910.0	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	1.72	2.76	0.0	4.05	1.87	11.25	4.22	2.21	0.62
Merged-chr14-30881472-1	chr14	30880972	30881972	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181390, exon 3 of 3)	3' UTR (NM_181390, exon 3 of 3)	2215.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	4.0	2.76	1.85	4.72	1.87	1.61	2.11	1.77	3.12
Merged-chr6-115908759-1	chr6	115908259	115909259	+	620.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167763, intron 17 of 28)	intron (NM_001167763, intron 17 of 28)	-23168.0	NM_145383	212541.0	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	5.15	4.61	1.85	6.07	3.73	1.61	2.11	4.42	5.0
Merged-chr12-57231619-1	chr12	57231119	57232119	+	620.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	MTD|LTR|ERVL-MaLR	1194.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	17.73	27.65	24.05	20.92	21.46	10.45	20.07	27.41	9.99
Merged-chr11-11513534-3	chr11	11513018	11514018	+	619.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347068, intron 8 of 8)	intron (NM_001347068, intron 8 of 8)	24252.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	6.86	10.14	4.62	9.45	5.13	16.08	4.22	4.86	8.12
Merged-chr7-106640987-1	chr7	106640487	106641487	+	619.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277182, intron 1 of 3)	MLT2B2|LTR|ERVL	3658.0	NM_001277179	434223.0	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	3.43	5.53	1.85	7.42	4.2	2.41	30.63	32.28	30.6
Merged-chr13-58687092-2	chr13	58686591	58687591	+	619.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	75220.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	14.3	18.89	13.87	13.49	14.46	28.94	10.56	8.84	14.36
Merged-chrX-8193538-2	chrX	8193019	8194019	+	619.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007898)	promoter-TSS (NM_007898)	-7.0	NM_007898	13595.0	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	32.61	37.32	25.9	45.88	41.05	40.19	34.85	39.8	31.23
Merged-chr14-14104297-1	chr14	14103797	14104797	+	619.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_139227, exon 12 of 12)	3' UTR (NM_139227, exon 12 of 12)	16607.0	NM_025550	66413.0	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.0	2.76	5.55	1.35	2.33	5.63	6.34	1.77	11.87
Merged-chr6-83696897-3	chr6	83696391	83697391	+	619.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_002871, intron 3 of 5)	ID_B1|SINE|B4	13934.0	NR_075094	574519.0	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	4.0	0.92	8.32	6.75	3.73	0.0	1.06	1.33	1.25
Merged-chr4-141536408-1	chr4	141535908	141536908	+	619.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347235, intron 1 of 14)	CpG	2189.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	19.45	21.2	22.2	43.18	21.93	38.58	36.97	31.39	14.36
Merged-chr10-80560827-1	chr10	80560327	80561327	+	619.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025852, intron 1 of 14)	intron (NM_025852, intron 1 of 14)	733.0	NM_025852	66932.0	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	80.66	78.33	46.25	86.36	73.24	43.4	114.07	74.28	35.6
Merged-chr8-126695071-3	chr8	126694586	126695586	+	619.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-101650.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	22.88	20.27	21.27	16.87	5.6	8.04	12.67	15.48	3.12
Merged-chr17-27908206-2	chr17	27907696	27908696	+	619.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_026836, exon 2 of 6)	5' UTR (NM_026836, exon 2 of 6)	1046.0	NM_026836	68776.0	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	100.68	110.59	89.72	109.3	77.91	75.56	84.49	89.76	61.2
Merged-chr10-52385457-2	chr10	52384952	52385952	+	619.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3328.0	NM_001199272	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	2.86	5.53	1.85	2.7	2.33	0.8	4.22	3.1	6.87
Merged-chr11-110941740-3	chr11	110941249	110942249	+	619.611145	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26284.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	6.86	5.99	9.25	6.75	1.87	6.43	5.28	7.07	5.0
Merged-chr2-129634112-2	chr2	129633612	129634612	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38650.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	41.76	45.16	18.5	64.77	43.85	39.39	35.91	23.43	28.73
Merged-chr13-93810565-2	chr13	93810047	93811047	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 4 of 7)	L1_Mus2|LINE|L1	19770.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	3.43	7.83	6.47	11.47	8.4	8.04	5.28	2.21	8.74
Merged-chr14-45691110-3	chr14	45690609	45691609	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32966.0	NM_001042719	114874.0	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	20.59	5.07	3.7	6.07	5.13	6.43	25.35	15.03	13.12
Merged-chr16-36776256-1	chr16	36775756	36776756	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145899, intron 3 of 6)	intron (NM_001145899, intron 3 of 6)	8706.0	NM_001145899	57738.0	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	4.58	4.61	1.85	3.37	6.53	0.0	2.11	3.1	7.49
Merged-chr10-43707965-1	chr10	43707465	43708465	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38193.0	NR_040581	69443.0	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	4.0	4.61	0.0	7.42	6.06	6.43	6.34	3.1	5.62
Merged-chr14-103345983-2	chr14	103345458	103346458	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	842.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	80.09	87.09	91.57	95.14	67.64	68.32	114.07	101.7	63.7
Merged-chr10-79712610-1	chr10	79712110	79713110	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009768)	TTS (NM_009768)	-4024.0	NM_008226	15166.0	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	4.58	2.76	1.85	0.67	0.47	3.22	2.11	0.0	2.5
Merged-chr8-124278549-1	chr8	124278049	124279049	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	47155.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	15.45	10.14	9.25	15.52	9.33	7.23	2.11	0.0	6.25
Merged-chr19-37696706-2	chr19	37696151	37697151	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1157.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.57	3.23	3.7	0.67	1.4	11.25	3.17	1.77	5.0
Merged-chr10-3943645-2	chr10	3943140	3944140	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033253, intron 10 of 15)	intron (NM_001033253, intron 10 of 15)	-29435.0	NM_001170786	270685.0	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	5.15	5.99	1.85	4.72	1.87	0.0	2.11	2.65	1.25
Merged-chr12-110851573-1	chr12	110851073	110852073	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028365, intron 1 of 7)	intron (NM_028365, intron 1 of 7)	1294.0	NM_028365	72805.0	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	29.17	24.42	30.52	37.11	33.59	40.99	36.97	34.93	23.73
Merged-chrX-12590806-1	chrX	12590306	12591306	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027439, intron 1 of 8)	intron (NM_027439, intron 1 of 8)	3047.0	NM_027439	70495.0	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	42.9	42.39	26.82	52.63	29.39	25.72	24.29	30.95	24.36
Merged-chr1-74379731-2	chr1	74379220	74380220	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013612, intron 4 of 14)	intron (NM_013612, intron 4 of 14)	4517.0	NM_013612	18173.0	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	34.9	62.21	70.3	57.35	35.45	86.81	95.06	73.4	86.81
Merged-chr15-60629083-1	chr15	60628583	60629583	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-193882.0	NR_030696	320469.0	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	1.14	1.38	1.85	4.72	0.47	8.04	4.22	2.21	2.5
Merged-chr5-121872465-2	chr5	121871971	121872971	+	619.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 17 of 22)	intron (NM_007804, intron 17 of 22)	23474.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	4.58	1.84	0.0	5.4	2.33	5.63	3.17	0.0	6.25
Merged-chr7-101918259-2	chr7	101917744	101918744	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162974, intron 2 of 3)	intron (NM_001162974, intron 2 of 3)	2981.0	NM_001357584	69358.0	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	8.01	5.07	5.55	6.07	0.93	3.22	5.28	3.1	6.87
Merged-chr3-122918736-1	chr3	122918236	122919236	+	619.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046036, intron 2 of 5)	intron (NR_046036, intron 2 of 5)	5380.0	NR_046036	74057.0	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	1.14	4.61	1.85	8.1	6.53	4.02	2.11	0.88	5.0
Merged-chr1-155097450-2	chr1	155096951	155097951	+	619.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010500, exon 1 of 1)	3' UTR (NM_010500, exon 1 of 1)	2185.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	249.42	266.33	109.14	197.69	212.26	170.4	173.21	236.12	116.79
Merged-chr10-127671644-1	chr10	127671144	127672144	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	4521.0	NR_045171	72243.0	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	9.15	2.3	1.85	4.05	1.4	3.22	4.22	4.42	6.25
Merged-chr4-135895406-1	chr4	135894906	135895906	+	619.333313	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_009924, exon 1 of 2)	5' UTR (NM_009924, exon 1 of 2)	217.0	NM_009924	12802.0	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	15.45	15.21	9.25	9.45	7.0	4.82	16.9	3.98	3.12
Merged-chr2-92486521-1	chr2	92486021	92487021	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26003.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	5.15	2.76	0.0	8.77	0.47	3.22	4.22	3.98	6.25
Merged-chr7-118996321-3	chr7	118995791	118996791	+	619.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-1080.0	NM_001195774	64297.0	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	2.29	1.84	0.92	1.35	0.0	2.41	1.06	2.21	3.75
Merged-chr14-36861866-1	chr14	36861366	36862366	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57669.0	NM_001347503	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	2.29	2.76	11.1	4.72	2.33	4.82	3.17	3.98	1.25
Merged-chr1-189867184-1	chr1	189866684	189867684	+	619.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008976, intron 18 of 18)	intron (NM_008976, intron 18 of 18)	55107.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	10.3	0.46	3.7	14.84	16.33	18.49	1.06	5.75	6.25
Merged-chr17-25474879-2	chr17	25474389	25475389	+	619.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027951, intron 4 of 5)	CpG	3299.0	NM_027951	71840.0	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	5.72	0.92	5.55	5.4	4.2	8.84	1.06	0.88	1.25
Merged-chr8-104170718-3	chr8	104170210	104171210	+	619.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001141922, exon 1 of 7)	5' UTR (NM_001141922, exon 1 of 7)	197.0	NM_001141925	65115.0	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	1.14	0.92	3.7	5.4	0.93	0.0	1.06	2.21	2.5
Merged-chr11-81996336-2	chr11	81995844	81996844	+	619.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27948.0	NM_001034013	11418.0	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	2.29	3.23	1.85	2.7	1.4	0.0	2.11	0.88	2.5
Merged-chr4-59181495-2	chr4	59180976	59181976	+	619.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8074.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.58	8.75	5.55	4.72	8.4	3.22	20.07	14.15	17.49
Merged-chr4-105260461-1	chr4	105259961	105260961	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	103114.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	3.43	10.6	10.17	8.1	10.26	11.25	3.17	3.1	8.12
Merged-chr18-75139948-1	chr18	75139448	75140448	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	121176.0	NM_027727	69190.0	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	6.29	2.3	5.55	1.35	0.0	6.43	1.06	0.44	3.75
Merged-chr4-32411443-1	chr4	32410943	32411943	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5992.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.0	5.53	1.85	2.02	0.93	5.63	2.11	1.77	3.75
Merged-chr1-34859720-2	chr1	34859212	34860212	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357425, intron 2 of 8)	intron (NM_001357425, intron 2 of 8)	9723.0	NM_001357425	226971.0	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	49.77	49.76	34.22	68.82	69.98	63.5	67.6	77.82	40.59
Merged-chr7-79729384-2	chr7	79728901	79729901	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175640, intron 3 of 8)	intron (NM_175640, intron 3 of 8)	3375.0	NM_175640	103968.0	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.0	2.76	1.85	7.42	1.4	6.43	4.22	0.0	1.25
Merged-chr13-9116782-1	chr13	9116282	9117282	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172585, intron 1 of 17)	intron (NM_172585, intron 1 of 17)	22901.0	NM_172585	217980.0	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	8.01	8.29	4.62	2.02	6.06	7.23	10.56	8.4	6.25
Merged-chr4-57904479-1	chr4	57903979	57904979	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11785.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	1.72	4.15	1.85	1.35	2.33	1.61	3.17	3.54	1.87
Merged-chr4-129056905-1	chr4	129056405	129057405	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-1366.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	2.86	4.15	3.7	5.4	2.8	1.61	7.39	3.98	3.75
Merged-chr3-17834922-1	chr3	17834422	17835422	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39260.0	NR_029814	723950.0		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	3.43	1.84	1.85	6.07	5.6	6.43	4.22	6.19	2.5
Merged-chr7-96883150-1	chr7	96882650	96883650	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 27 of 32)	intron (NM_011858, intron 27 of 32)	-68377.0	NM_153591	244141.0	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	9.72	8.29	9.25	6.07	7.93	1.61	0.0	0.0	3.75
Merged-chr5-137194593-1	chr5	137194093	137195093	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78386.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	6.86	5.07	6.47	5.4	2.8	8.04	2.11	3.54	5.62
Merged-chr5-96532102-2	chr5	96531579	96532579	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175473, intron 3 of 73)	L2a|LINE|L2	158124.0	NM_175473	231470.0	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	2.29	2.3	3.7	1.35	1.87	0.0	9.51	4.86	6.25
Merged-chr19-7303505-1	chr19	7303005	7304005	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001080388, intron 1 of 16)	intron (NM_001080388, intron 1 of 16)	-8058.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	10.3	11.52	13.87	18.89	5.13	8.04	10.56	3.54	7.49
Merged-chr17-35918614-1	chr17	35918114	35919114	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357740)	promoter-TSS (NM_001357740)	-658.0	NM_001357740	52040.0	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	343.8	599.48	192.39	350.85	445.05	204.97	392.9	496.55	204.22
Merged-chr2-122151307-1	chr2	122150807	122151807	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009735, intron 2 of 3)	intron (NM_009735, intron 2 of 3)	3620.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	44.05	37.32	32.37	39.13	17.26	23.31	47.53	43.33	34.97
Merged-chr2-144173976-1	chr2	144173476	144174476	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_136884, exon 4 of 4)	non-coding (NR_136884, exon 4 of 4)	15314.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	3.43	1.84	0.0	7.42	4.2	2.41	6.34	4.42	7.49
Merged-chr4-94739515-1	chr4	94739015	94740015	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001290549, exon 1 of 23)	5' UTR (NM_001290549, exon 1 of 23)	226.0	NM_001290551	21687.0	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	1.72	2.3	1.85	6.75	2.33	3.22	4.22	1.77	0.0
Merged-chrX-162715826-1	chrX	162715326	162716326	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 4 of 5)	ID4|SINE|ID	20787.0	NR_153331	102640117.0	Mm.183845	NR_153331	ENSMUSG00000086034	Gm15201	-	predicted gene 15201	ncRNA	4.58	1.84	7.4	6.75	6.06	12.86	2.11	2.21	1.25
Merged-chr3-116124046-1	chr3	116123546	116124546	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011693, intron 4 of 8)	intron (NM_011693, intron 4 of 8)	5642.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	35.47	45.62	30.52	34.41	23.79	48.23	33.8	31.39	34.35
Merged-chr11-121234054-1	chr11	121233554	121234554	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3182.0	NM_026272	67608.0	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	6.29	4.15	3.7	4.05	4.2	3.22	2.11	3.1	7.49
Merged-chr13-37482262-1	chr13	37481762	37482762	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	136917.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	42.33	24.88	34.22	39.13	15.39	36.17	14.79	16.36	9.99
Merged-chr16-75343375-1	chr16	75342875	75343875	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	242686.0	NM_001252513	320355.0	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	1.72	0.46	0.0	3.37	1.4	0.0	1.06	1.33	0.0
Merged-chr13-74564537-1	chr13	74564037	74565037	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70587.0	NM_146231	235956.0		NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	33.75	30.87	50.87	45.88	26.12	48.23	52.81	60.58	35.6
Merged-chr14-103375763-1	chr14	103375263	103376263	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-28963.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	8.58	5.07	1.85	7.42	7.93	14.47	16.9	3.98	12.49
Merged-chr3-40848147-1	chr3	40847647	40848647	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038067, intron 1 of 5)	intron (NR_038067, intron 1 of 5)	1148.0	NR_038067	100039027.0	Mm.482948	NR_038067		Gm2011	-	predicted gene 2011	pseudo	4.58	3.23	7.4	4.72	4.67	3.22	7.39	4.42	3.75
Merged-chr5-33336036-1	chr5	33335536	33336536	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021500, intron 1 of 8)	CpG	464.0	NM_021500	59003.0	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	92.1	135.93	126.72	131.57	104.03	110.12	138.36	114.96	59.33
Merged-chr3-116751396-1	chr3	116750896	116751896	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081326, intron 30 of 33)	B3|SINE|B2	-39116.0	NM_001362374	229782.0	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	1.72	3.69	0.0	8.1	2.33	2.41	2.11	1.77	1.87
Merged-chr5-143033108-1	chr5	143032608	143033608	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	72753.0	NM_007984	14086.0	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	39.47	46.08	41.62	35.76	39.19	36.97	30.63	34.49	24.98
Merged-chr14-31462437-2	chr14	31461960	31462960	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-26360.0	NM_011894	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.72	4.15	1.85	6.07	2.33	1.61	4.22	6.63	2.5
Merged-chr11-115047927-1	chr11	115047427	115048427	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199201, intron 1 of 3).2	ID_B1|SINE|B4	368.0	NM_199201	382551.0	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	139.01	153.9	74.92	234.13	205.73	156.74	125.69	116.73	53.08
Merged-chr11-61518133-2	chr11	61517631	61518631	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010148, exon 10 of 10)	3' UTR (NM_010148, exon 10 of 10)	12987.0	NM_001330781	27078.0	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	7.44	3.23	2.77	5.4	4.2	7.23	6.34	3.1	6.25
Merged-chr9-44800138-1	chr9	44799638	44800638	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357383)	promoter-TSS (NM_001357383)	-891.0	NM_001357383	71687.0	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	10.87	5.07	5.55	4.05	5.13	4.82	7.39	15.03	1.25
Merged-chr18-65921942-1	chr18	65921442	65922442	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	17147.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	1.14	1.84	1.85	0.0	4.67	4.82	1.06	0.88	3.75
Merged-chr4-133178500-1	chr4	133178000	133179000	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-17155.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	38.9	58.06	47.17	62.07	57.85	84.4	68.65	81.8	33.72
Merged-chr7-143024502-3	chr7	143023989	143024989	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_110354, intron 4 of 4)	Lx7|LINE|L1	18830.0	NM_001128081	27027.0	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	50.34	29.03	24.05	31.04	19.13	9.65	31.69	27.86	16.86
Merged-chr2-105417865-1	chr2	105417365	105418365	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18546.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	4.58	1.38	7.4	4.05	1.87	1.61	1.06	0.88	3.12
Merged-chr6-65150914-1	chr6	65150414	65151414	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6184.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	13.16	17.05	1.85	17.54	29.86	27.33	19.01	19.01	13.12
Merged-chr5-115731473-1	chr5	115730973	115731973	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080808, exon 1 of 9)	exon (NM_001080808, exon 1 of 9)	148.0	NM_001080808	75665.0	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	1.72	1.84	0.0	2.02	1.87	4.82	0.0	0.44	3.75
Merged-chr5-146844452-1	chr5	146843952	146844952	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026864)	promoter-TSS (NM_026864)	-619.0	NM_026864	68895.0	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	14.87	11.06	3.7	11.47	20.06	12.86	23.24	28.3	16.24
Merged-chr5-141058159-1	chr5	141057659	141058659	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57563.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	9.15	6.45	7.4	8.1	7.0	3.22	10.56	8.84	6.25
Merged-chr4-95871374-1	chr4	95870874	95871874	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113412, intron 14 of 15)	intron (NM_001113412, intron 14 of 15)	95661.0	NR_045777	319247.0	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	4.58	3.23	0.0	6.07	2.33	0.0	7.39	4.86	7.49
Merged-chr1-180407258-1	chr1	180406758	180407758	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	76246.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	9.15	14.28	12.02	12.82	8.86	11.25	4.22	4.42	3.75
Merged-chr16-97543395-1	chr16	97542895	97543895	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	7312.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	12.59	8.29	8.32	10.12	6.53	11.25	8.45	3.54	9.99
Merged-chr2-167686873-1	chr2	167686373	167687373	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-2042.0	NM_009883	12608.0	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	16.59	11.06	12.02	10.12	9.33	21.7	12.67	6.19	20.61
Merged-chr6-85037858-1	chr6	85037358	85038358	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 1 of 21)	intron (NM_177077, intron 1 of 21)	31655.0	NM_177077	75914.0	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	3.43	2.3	0.0	4.05	0.93	1.61	1.06	2.65	1.25
Merged-chr12-71012267-2	chr12	71011758	71012758	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045056, intron 2 of 2)	B4A|SINE|B4	3565.0	NR_045056	73204.0	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	21.17	21.2	26.82	10.12	10.26	8.04	11.62	14.59	12.49
Merged-chr12-100111109-1	chr12	100110609	100111609	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1222.0	NM_008947	19179.0	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	106.4	79.72	29.6	118.08	84.9	113.33	126.74	139.28	77.44
Merged-chrX-52991034-1	chrX	52990534	52991534	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013556, intron 1 of 8)	intron (NM_013556, intron 1 of 8)	2956.0	NM_013556	15452.0	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	12.59	13.36	22.2	10.8	15.86	26.53	19.01	18.57	15.61
Merged-chr7-44851136-2	chr7	44850632	44851632	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253920, intron 1 of 4)	intron (NM_001253920, intron 1 of 4)	1125.0	NM_001253920	67605.0	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	28.6	37.32	45.32	37.11	35.45	34.56	27.46	37.14	26.23
Merged-chr13-90886860-3	chr13	90886359	90887359	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001145879, intron 5 of 6)	intron (NM_001145879, intron 5 of 6)	18496.0	NM_001145879	435376.0	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	2.86	2.3	1.85	0.0	2.8	0.0	4.22	1.77	2.5
Merged-chr13-24862766-1	chr13	24862266	24863266	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081051, intron 5 of 20)	intron (NM_001081051, intron 5 of 20)	17635.0	NR_131787	210108.0	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	3.43	2.3	0.0	4.05	2.33	1.61	2.11	0.0	0.0
Merged-chr15-5108600-1	chr15	5108100	5109100	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001163138)	promoter-TSS (NM_001163138)	-67.0	NM_001163138	239319.0	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	14.87	14.28	8.32	16.87	11.66	19.29	34.85	14.59	16.24
Merged-chr14-25785369-1	chr14	25784869	25785869	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16513.0	NM_001101433	71918.0	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	5.15	7.37	3.7	10.12	10.26	0.0	8.45	3.98	1.25
Merged-chr7-127011199-1	chr7	127010699	127011699	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080638, intron 1 of 14)	intron (NM_080638, intron 1 of 14)	3395.0	NM_080638	78388.0	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	47.48	43.31	35.15	30.36	21.46	32.15	17.96	15.48	19.98
Merged-chr2-160383084-2	chr2	160382593	160383593	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16028.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	2.86	1.84	11.1	6.75	3.27	7.23	6.34	1.77	6.25
Merged-chr8-71284430-1	chr8	71283930	71284930	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 1 of 39)	intron (NM_001142322, intron 1 of 39)	11716.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	21.17	24.88	20.35	21.59	25.19	37.78	23.24	26.09	26.23
Merged-chr14-40923566-1	chr14	40923066	40924066	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	24643.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	12.01	20.74	20.35	19.57	6.06	20.9	23.24	15.03	23.11
Merged-chr11-5444439-1	chr11	5443939	5444939	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080924, exon 1 of 9)	exon (NM_001080924, exon 1 of 9)	408.0	NM_001080924	407821.0	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	36.04	32.72	40.7	36.43	19.13	29.74	60.2	27.41	24.36
Merged-chr15-31632720-1	chr15	31632220	31633220	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	30604.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	6.29	3.69	0.0	5.4	5.6	4.82	1.06	2.65	5.62
Merged-chr1-152601570-1	chr1	152601070	152602070	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	23647.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	43.48	52.53	51.8	38.46	31.72	39.39	47.53	34.93	43.72
Merged-chr3-88483855-2	chr3	88483371	88484371	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_019390, exon 9 of 10)	exon (NM_019390, exon 9 of 10)	9441.0	NM_019390	16905.0	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	7.44	0.46	5.55	2.02	0.93	4.82	5.28	0.44	2.5
Merged-chr3-79126802-1	chr3	79126302	79127302	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	18085.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	15.45	19.35	17.57	16.19	7.93	9.65	38.02	35.82	39.97
Merged-chr18-23750278-1	chr18	23749778	23750778	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_126066)	TTS (NR_126066)	2027.0	NR_126066	100502834.0	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	-	predicted gene 15972	ncRNA	20.59	18.89	16.65	35.09	28.92	16.08	14.79	25.2	9.99
Merged-chr1-155863178-1	chr1	155862678	155863678	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001039184, exon 34 of 38)	exon (NM_001039184, exon 34 of 38)	-50279.0	NM_001024945	104009.0	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx|b2b2673Clo	quiescin Q6 sulfhydryl oxidase 1	protein-coding	5.15	5.07	7.4	1.35	4.2	8.84	7.39	0.88	1.25
Merged-chr2-128371028-1	chr2	128370528	128371528	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028590, intron 1 of 2)	intron (NR_028590, intron 1 of 2)	58323.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	23.45	33.18	41.62	43.18	27.52	49.03	26.4	28.74	24.36
Merged-chr19-43909512-1	chr19	43909012	43910012	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028029, intron 3 of 15)	intron (NM_028029, intron 3 of 15)	-29744.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	3.43	5.07	7.4	5.4	4.2	3.22	2.11	5.75	0.0
Merged-chr4-123575857-1	chr4	123575357	123576357	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-40563.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	24.6	26.26	30.52	24.29	15.39	16.88	34.85	17.24	21.23
Merged-chr10-7883666-1	chr10	7883166	7884166	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47285.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	9.72	3.69	1.85	12.82	0.93	1.61	2.11	2.65	1.25
Merged-chr3-107680843-1	chr3	107680343	107681343	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145542, intron 1 of 16)	intron (NM_145542, intron 1 of 16)	15213.0	NM_001357113	229709.0	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	16.02	22.12	24.97	21.59	16.79	12.86	14.79	15.92	12.49
Merged-chr2-59181999-1	chr2	59181499	59182499	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 1 of 20)	intron (NM_175464, intron 1 of 20)	21149.0	NM_175464	227937.0	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	29.75	26.73	28.67	24.29	14.46	20.9	29.57	34.49	22.48
Merged-chr6-94060112-1	chr6	94059612	94060612	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-146422.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.29	4.61	0.0	2.7	3.27	4.02	2.11	3.98	1.25
Merged-chr6-22398254-1	chr6	22397754	22398754	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42173.0	NM_138587	27999.0	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	24.6	34.1	23.12	16.87	23.33	26.53	15.84	18.57	27.48
Merged-chr16-11676850-1	chr16	11676350	11677350	+	619.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	intron (NM_028964, intron 18 of 20)	-102852.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	24.6	27.65	39.77	22.27	24.72	29.74	80.27	75.17	32.48
Merged-chr9-99119943-1	chr9	99119443	99120443	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 2 of 23)	intron (NM_029094, intron 2 of 23)	20268.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	14.87	11.98	20.35	10.8	8.4	9.65	24.29	15.03	6.87
Merged-chr6-124857612-1	chr6	124857112	124858112	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013534)	promoter-TSS (NM_013534)	75.0	NM_013534	14789.0	Mm.35708	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	10.3	4.61	0.0	12.82	3.27	0.0	5.28	2.21	5.0
Merged-chr17-17881465-2	chr17	17880974	17881974	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013521, intron 1 of 1)	intron (NM_013521, intron 1 of 1)	2465.0	NM_013521	14293.0	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	64.64	92.16	61.97	60.72	61.11	45.01	92.94	85.34	74.32
Merged-chr7-80823973-2	chr7	80823478	80824478	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20647.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	1.72	1.84	1.85	4.05	1.4	5.63	6.34	3.98	4.37
Merged-chr15-3213937-1	chr15	3213437	3214437	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56830.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	2.86	3.69	0.0	0.0	2.33	1.61	2.11	1.33	0.0
Merged-chr6-57767314-1	chr6	57766814	57767814	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	57811.0	NM_146168	232023.0	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	28.03	36.4	32.37	19.57	10.73	40.19	16.9	24.32	9.99
Merged-chr9-120578914-1	chr9	120578414	120579414	+	619.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_073359)	TTS (NR_073359)	1583.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	13.73	11.52	12.02	8.1	7.93	3.22	9.51	4.42	2.5
Merged-chr7-127761210-2	chr7	127760728	127761728	+	619.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172748, intron 7 of 10)	intron (NM_172748, intron 7 of 10)	-8587.0	NM_198424	269999.0	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	4.0	3.23	3.7	7.42	2.33	5.63	3.17	3.1	4.37
Merged-chr10-93641189-4	chr10	93640719	93641719	+	618.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_021320, exon 1 of 10)	5' UTR (NM_021320, exon 1 of 10)	170.0	NM_021320	57764.0	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	12.59	4.15	6.47	8.77	1.87	8.04	9.51	2.21	6.25
Merged-chr5-108447926-2	chr5	108447411	108448411	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172883, intron 1 of 9)	intron (NM_172883, intron 1 of 9)	1189.0	NM_001359977	243197.0	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7|Slc49a3	major facilitator superfamily domain containing 7A	protein-coding	11.44	10.14	14.8	14.17	7.46	20.09	3.17	9.29	7.49
Merged-chr4-87759271-2	chr4	87758771	87759771	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47052.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.15	4.15	3.7	3.37	2.33	4.82	1.06	0.88	2.5
Merged-chr13-33995435-2	chr13	33994930	33995930	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001243192, intron 2 of 7)	intron (NM_001243192, intron 2 of 7)	-6933.0	NM_001359997	19766.0	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|RIP-1|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	5.72	5.53	3.7	3.37	0.47	6.43	4.22	3.1	3.75
Merged-chr1-43520788-2	chr1	43520293	43521293	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	75042.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	30.89	39.63	38.85	43.18	40.12	44.21	39.08	49.96	38.1
Merged-chr10-34132129-2	chr10	34131571	34132571	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4099.0	NM_175449	215900.0	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik|Calhm6	family with sequence similarity 26, member F	protein-coding	107.55	117.5	70.3	100.53	79.31	74.75	96.11	89.76	66.82
Merged-chr12-40478165-2	chr12	40477662	40478662	+	618.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	32109.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	6.29	8.29	14.8	10.8	12.6	10.45	27.46	7.07	8.12
Merged-chr13-60691803-1	chr13	60691303	60692303	+	618.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	ORR1D2|LTR|ERVL-MaLR	89592.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	11.44	15.67	21.27	16.19	12.6	27.33	2.11	6.19	8.74
Merged-chr11-5109943-3	chr11	5109441	5110441	+	618.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080595, intron 14 of 14)	intron (NM_080595, intron 14 of 14)	9776.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	9.72	9.22	14.8	10.12	8.86	8.04	11.62	9.73	5.0
Merged-chr12-108657550-1	chr12	108657050	108658050	+	618.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163396, intron 4 of 14)	intron (NM_001163396, intron 4 of 14)	-1070.0	NR_029771	723909.0		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	6.86	2.3	9.25	2.7	2.8	12.86	8.45	3.54	6.25
Merged-chr4-111442543-1	chr4	111442043	111443043	+	618.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033793, intron 3 of 5)	intron (NR_033793, intron 3 of 5)	27537.0	NM_026279	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	4.58	5.07	6.47	2.7	7.46	9.65	5.28	2.65	2.5
Merged-chr11-70656524-1	chr11	70656024	70657024	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001276285)	promoter-TSS (NM_001276285)	-652.0	NM_001136062	13808.0	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	96.11	66.35	93.42	99.86	78.84	129.41	106.67	126.02	76.19
Merged-chr2-126674076-1	chr2	126673576	126674576	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271470, intron 1 of 8)	Charlie1b|DNA|hAT-Charlie	1276.0	NM_001355109	14391.0	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	157.31	217.95	95.27	157.88	194.07	119.76	161.6	168.47	73.07
Merged-chr6-31215222-1	chr6	31214722	31215722	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	3252.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	32.04	21.2	23.12	30.36	23.79	17.68	19.01	13.71	15.61
Merged-chr15-59017652-1	chr15	59017152	59018152	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	MLT1A0|LTR|ERVL-MaLR	64374.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	14.3	6.91	1.85	16.19	14.0	11.25	12.67	4.86	3.75
Merged-chr2-166977722-3	chr2	166977222	166978222	+	618.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-13005.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	37.18	53.45	75.85	38.46	43.39	39.39	73.93	63.23	35.6
Merged-chr17-64332925-1	chr17	64332425	64333425	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1042.0	NM_001025309	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	89.81	94.0	57.35	60.05	94.7	63.5	74.99	88.88	44.34
Merged-chr11-69546539-2	chr11	69545998	69546998	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081330, intron 1 of 85)	intron (NM_001081330, intron 1 of 85)	2610.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	17.73	3.69	1.85	9.45	3.27	4.82	2.11	1.33	5.62
Merged-chr11-29655349-1	chr11	29654849	29655849	+	618.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-37549.0	NM_194053	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	3.43	2.3	0.92	9.45	9.33	7.23	9.51	6.63	3.75
Merged-chr5-90703069-1	chr5	90702569	90703569	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56229.0	NM_009141	20311.0	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	5.72	3.69	3.7	2.02	1.87	4.82	2.11	3.54	2.5
Merged-chr5-5610532-1	chr5	5610032	5611032	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172447, intron 13 of 22)	intron (NM_172447, intron 13 of 22)	36733.0	NR_033499	667705.0	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	4.58	6.45	9.25	2.02	7.93	1.61	5.28	7.07	2.5
Merged-chr13-20898850-1	chr13	20898350	20899350	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012054, intron 4 of 20)	intron (NM_012054, intron 4 of 20)	104737.0	NM_012054	27052.0	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	9.15	5.53	18.5	0.67	7.46	8.84	7.39	2.65	10.62
Merged-chr7-83653389-1	chr7	83652889	83653889	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360088, intron 13 of 18)	intron (NM_001360088, intron 13 of 18)	2106.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	55.49	85.25	54.57	72.19	54.58	69.13	38.02	36.26	24.98
Merged-chr10-44146898-1	chr10	44146398	44147398	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23549.0	NR_001582	70365.0	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	4.58	2.76	0.0	6.75	5.13	9.65	4.22	8.4	6.25
Merged-chr9-63782853-2	chr9	63782362	63783362	+	618.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24868.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	9.15	11.52	0.0	3.37	7.46	4.82	7.39	1.33	11.24
Merged-chr6-142988958-2	chr6	142988465	142989465	+	618.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24513.0	NM_011374	20449.0	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	5.15	1.84	0.0	2.7	1.87	4.82	2.11	1.33	8.12
Merged-chr7-80554952-1	chr7	80554452	80555452	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19833.0	NM_001042527	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	8.01	5.99	1.85	9.45	10.73	4.82	8.45	3.1	9.99
Merged-chr11-109269853-1	chr11	109269353	109270353	+	618.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28328.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.29	4.61	1.85	3.37	6.06	1.61	11.62	3.98	7.49
Merged-chr11-113444458-1	chr11	113443958	113444958	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	121357.0	NM_001166503	69806.0	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	1.72	0.92	2.77	10.12	8.86	16.08	1.06	0.44	1.25
Merged-chr5-117377963-1	chr5	117377463	117378463	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_021539, exon 9 of 9)	3' UTR (NM_021539, exon 9 of 9)	11060.0	NM_028128	72151.0	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	12.01	9.22	16.65	14.84	5.13	10.45	8.45	6.63	11.24
Merged-chr13-103334518-1	chr13	103334018	103335018	+	618.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	-26.0	NM_175171	328329.0	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.0	1.38	3.7	1.35	0.93	4.82	0.0	0.0	2.5
Merged-chr5-121122615-1	chr5	121122115	121123115	+	618.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	68782.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	6.29	4.61	3.7	5.4	0.47	8.84	19.01	24.76	19.98
Merged-chr11-110371994-2	chr11	110371498	110372498	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27104.0	NM_001356345	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	17.16	18.43	4.62	72.19	65.31	54.66	103.51	118.94	60.58
Merged-chr14-104434490-2	chr14	104433983	104434983	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33516.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.57	2.3	1.85	2.7	1.87	3.22	1.06	3.54	1.87
Merged-chr11-109365493-2	chr11	109365011	109366011	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359034, intron 1 of 2)	intron (NM_001359034, intron 1 of 2)	-1857.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	108.12	135.01	91.57	136.29	118.49	86.01	179.55	210.03	83.69
Merged-chr2-150755252-2	chr2	150754754	150755754	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355068, intron 2 of 13)	intron (NM_001355068, intron 2 of 13)	6173.0	NM_172117	12497.0	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	14.87	15.21	33.3	12.14	9.8	21.7	14.79	23.88	18.11
Merged-chr9-121877269-2	chr9	121876772	121877772	+	618.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19476.0	NM_001357840	56295.0	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	5.15	4.61	3.7	2.7	1.87	6.43	10.56	14.59	11.87
Merged-chr7-113134046-2	chr7	113133556	113134556	+	618.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045978, intron 2 of 5)	intron (NR_045978, intron 2 of 5)	7959.0	NR_045978	75239.0	Mm.381688	NR_045978	ENSMUSG00000110009	4930543E12Rik	4930545H14Rik	RIKEN cDNA 4930543E12 gene	ncRNA	1.14	8.29	3.7	0.67	1.4	2.41	7.39	1.33	3.75
Merged-chr14-121991496-1	chr14	121990996	121991996	+	618.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026861, intron 6 of 8)	intron (NM_026861, intron 6 of 8)	-26303.0	NM_183031	321019.0	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	4.0	1.84	0.0	3.37	3.73	4.82	4.22	7.52	2.5
Merged-chr4-16162274-2	chr4	16161781	16162781	+	618.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138102, intron 1 of 11)	intron (NR_138102, intron 1 of 11)	1362.0	NM_138952	192656.0	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	34.9	41.47	27.75	26.99	25.66	19.29	43.3	41.12	29.35
Merged-chr6-108773141-3	chr6	108772695	108773695	+	618.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9864.0	NM_026011	67166.0	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	2.29	1.84	3.7	3.37	2.8	9.65	4.22	1.77	7.49
Merged-chr6-146641986-2	chr6	146641486	146642486	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025315)	promoter-TSS (NM_025315)	-593.0	NM_025315	108098.0	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	69.79	78.33	46.25	60.05	70.91	64.3	60.2	60.58	46.84
Merged-chr3-97228801-2	chr3	97228281	97229281	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	29.17	69.12	47.17	31.04	22.39	56.27	67.6	65.88	42.47
Merged-chr11-107044495-1	chr11	107043995	107044995	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359590, intron 24 of 27)	intron (NM_001359590, intron 24 of 27)	16272.0	NM_001163473	69066.0	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	3.43	5.99	5.55	8.77	4.67	0.0	8.45	3.98	1.25
Merged-chr17-64232649-1	chr17	64232149	64233149	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	99234.0	NM_144859	224938.0	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja ring finger ubiquitin ligase 2	protein-coding	23.45	20.74	37.0	18.89	25.66	27.33	49.64	42.01	27.48
Merged-chr14-67920114-1	chr14	67919614	67920614	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	13458.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	5.15	3.23	5.55	5.4	2.33	3.22	4.22	2.65	2.5
Merged-chr9-90197151-1	chr9	90196651	90197651	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001326294, exon 22 of 23)	exon (NM_001326294, exon 22 of 23)	34173.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	8.58	4.15	1.85	8.1	1.87	0.8	7.39	2.21	3.75
Merged-chr13-95884207-1	chr13	95883707	95884707	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 1 of 35)	ORR1D2|LTR|ERVL-MaLR	7715.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.29	2.3	0.0	19.57	21.46	24.11	15.84	4.42	2.5
Merged-chr15-99818737-1	chr15	99818237	99819237	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113545, intron 4 of 10)	intron (NM_001113545, intron 4 of 10)	1412.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	108.69	140.08	65.67	56.68	64.38	41.8	85.55	126.9	73.07
Merged-chr16-49796498-1	chr16	49795998	49796998	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59156.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	5.72	1.84	5.55	1.35	0.93	2.41	2.11	6.63	2.5
Merged-chr10-20724507-2	chr10	20724006	20725006	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	572.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	134.43	179.71	83.25	110.65	132.95	88.42	179.55	211.8	86.18
Merged-chr11-89020090-1	chr11	89019590	89020590	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20687.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	52.06	28.11	53.65	47.23	37.79	73.14	67.6	51.73	46.84
Merged-chr17-23790648-1	chr17	23790148	23791148	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-4432.0	NM_001357140	76917.0	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	19.45	25.34	18.5	16.19	20.99	16.88	62.31	46.43	28.73
Merged-chr17-5047582-1	chr17	5047082	5048082	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	52508.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	12.01	20.27	27.75	9.45	6.06	4.02	25.35	22.55	9.37
Merged-chr15-38666645-1	chr15	38666145	38667145	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	4741.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	12.01	5.53	3.7	12.14	6.53	9.65	7.39	5.75	8.12
Merged-chr13-59818023-1	chr13	59817523	59818523	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153538, intron 2 of 27)	intron (NM_153538, intron 2 of 27)	5124.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	12.01	18.43	16.65	18.22	10.73	20.09	11.62	12.82	13.74
Merged-chr1-149917266-1	chr1	149916766	149917766	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008869, intron 3 of 17)	intron (NM_008869, intron 3 of 17)	5173.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	10.3	7.83	29.6	14.84	22.39	8.84	21.12	15.03	12.49
Merged-chr9-111096615-1	chr9	111096115	111097115	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21496.0	NM_027742	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	3.43	2.3	2.77	8.1	1.87	0.8	3.17	4.42	6.25
Merged-chr16-26065265-1	chr16	26064765	26065765	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	40519.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.57	4.15	5.55	4.72	3.27	2.41	3.17	2.65	3.75
Merged-chr19-37544186-2	chr19	37543671	37544671	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6247.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	21.17	20.74	15.72	31.04	17.26	13.66	21.12	17.24	5.62
Merged-chr4-86579679-1	chr4	86579179	86580179	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_173400, exon 17 of 17)	3' UTR (NM_173400, exon 17 of 17)	4006.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	22.88	16.59	16.65	40.48	14.93	36.17	25.35	30.95	16.86
Merged-chr7-143584128-1	chr7	143583628	143584628	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252593, intron 6 of 21)	intron (NM_001252593, intron 6 of 21)	-13369.0	NR_106031	102465644.0		NR_106031	ENSMUSG00000098593	Mir7064	Gm27632|mmu-mir-7064	microRNA 7064	ncRNA	1.14	0.92	0.0	4.05	2.33	8.04	2.11	3.1	2.5
Merged-chr8-126481780-1	chr8	126481280	126482280	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6715.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	6.29	2.3	7.4	4.05	1.4	0.0	6.34	1.77	2.5
Merged-chr1-39603554-1	chr1	39603054	39604054	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-26207.0	NM_001033135	67702.0	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4	ring finger protein 149	protein-coding	13.73	7.37	9.25	2.7	5.13	5.63	9.51	4.86	3.75
Merged-chr13-33957007-1	chr13	33956507	33957507	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 3 of 4)	intron (NR_040707, intron 3 of 4)	-7652.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	6.86	3.69	3.7	1.35	6.53	8.84	2.11	2.65	11.24
Merged-chr3-127971033-1	chr3	127970533	127971533	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54862.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.43	3.23	3.7	1.35	2.8	1.61	5.28	2.21	0.62
Merged-chr2-69670709-1	chr2	69670209	69671209	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081087, exon 1 of 6)	exon (NM_001081087, exon 1 of 6)	589.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	5.72	3.23	0.0	2.7	6.53	4.82	4.22	9.29	3.75
Merged-chr6-37605077-1	chr6	37604577	37605577	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	74904.0	NM_145364	208665.0	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	6.86	9.68	1.85	9.45	1.87	11.25	3.17	0.88	12.49
Merged-chr1-155093640-1	chr1	155093140	155094140	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5996.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	7.44	3.69	11.1	5.4	7.93	6.43	6.34	0.88	1.87
Merged-chr16-49797076-1	chr16	49796576	49797576	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERV3-16A3_LTR|LTR|ERVL	-58578.0	NM_010581	16423.0	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	8.01	1.84	5.55	4.05	0.93	9.65	2.11	3.54	2.5
Merged-chr4-59381160-1	chr4	59380660	59381660	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	57473.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.0	4.15	1.85	4.72	3.73	6.43	2.11	2.21	0.0
Merged-chr7-66232822-1	chr7	66232322	66233322	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	123307.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	9.15	11.06	13.87	5.4	3.27	6.43	4.22	1.77	7.49
Merged-chr2-153424790-1	chr2	153424290	153425290	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001986, intron 2 of 7)	intron (NM_001001986, intron 2 of 7)	19689.0	NM_001001986	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	3.43	1.84	9.25	9.45	7.0	9.65	5.28	5.75	5.0
Merged-chr14-9395764-1	chr14	9395264	9396264	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-488331.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	4.0	1.84	0.0	8.1	3.73	6.43	5.28	4.42	6.25
Merged-chr17-53578466-1	chr17	53577966	53578966	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151733, intron 1 of 16)	RSINE1|SINE|B4	-5660.0	NM_001190846	18519.0	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	6.86	4.61	9.25	12.14	3.73	4.82	7.39	11.05	12.49
Merged-chr10-75589970-1	chr10	75589470	75590470	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359425, intron 1 of 7)	intron (NM_001359425, intron 1 of 7)	589.0	NR_153110	23887.0	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	32.61	35.94	40.7	20.24	19.59	42.6	34.85	22.55	16.86
Merged-chr15-73687689-1	chr15	73687189	73688189	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19816.0	NM_173365	239530.0	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	1.72	1.84	7.4	2.02	0.93	0.0	1.06	1.33	1.87
Merged-chr13-101685104-1	chr13	101684604	101685604	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024955, intron 9 of 9)	intron (NM_001024955, intron 9 of 9)	7526.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	2.29	3.69	7.4	4.72	5.13	3.22	6.34	1.77	12.49
Merged-chr8-88667982-3	chr8	88667485	88668485	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145857, intron 4 of 12)	intron (NM_145857, intron 4 of 12)	20638.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	140.15	129.02	121.17	89.74	76.51	101.28	102.45	107.89	78.69
Merged-chr14-51907335-1	chr14	51906835	51907835	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360266, intron 11 of 15)	intron (NM_001360266, intron 11 of 15)	4654.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	2.29	2.76	3.7	1.35	1.87	0.0	3.17	1.77	3.75
Merged-chr5-125314119-1	chr5	125313619	125314619	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 1 of 10)	intron (NM_001205083, intron 1 of 10)	26975.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	26.31	31.33	50.87	37.78	32.66	26.53	35.91	38.03	34.35
Merged-chr7-99956351-1	chr7	99955851	99956851	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	24107.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	13.16	17.51	18.5	12.14	13.06	20.09	11.62	6.63	9.99
Merged-chr5-149471427-1	chr5	149470927	149471927	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001310763)	TTS (NM_001310763)	31767.0	NM_001310765	75860.0	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	5.15	4.61	20.35	5.4	5.13	3.22	15.84	11.5	14.36
Merged-chr13-52071382-3	chr13	52070883	52071883	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-25358.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	9.72	6.45	3.7	9.45	6.06	4.02	16.9	13.71	9.37
Merged-chr3-89243696-1	chr3	89243196	89244196	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_183037, exon 3 of 10)	exon (NM_183037, exon 3 of 10)	1317.0	NR_121683	360213.0	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	1.14	0.46	0.0	4.05	2.33	4.82	3.17	0.88	6.25
Merged-chr6-53854648-2	chr6	53854132	53855132	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR33A|LTR|ERVL	-33807.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	14.87	9.22	12.95	8.77	7.93	7.23	8.45	11.94	13.74
Merged-chr3-109340985-1	chr3	109340485	109341485	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_020505, exon 1 of 27)	5' UTR (NM_020505, exon 1 of 27)	302.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	68.65	41.47	58.27	47.9	24.26	61.09	69.71	32.72	33.1
Merged-chr15-41595194-1	chr15	41594694	41595694	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	146091.0	NM_001358977	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.57	2.76	1.85	2.7	6.06	0.0	1.06	3.1	0.0
Merged-chr2-5768478-2	chr2	5767990	5768990	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53728.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	32.04	34.56	44.4	42.51	33.59	49.83	50.7	48.2	55.58
Merged-chr6-5038185-2	chr6	5037679	5038679	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	MTA_Mm|LTR|ERVL-MaLR	134859.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	10.87	5.53	3.7	4.72	5.13	8.84	6.34	3.54	13.74
Merged-chr3-88476609-2	chr3	88476101	88477101	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15419.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	4.58	3.69	2.77	2.7	1.87	0.0	1.06	1.77	3.75
Merged-chr7-110786888-1	chr7	110786388	110787388	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009667, intron 2 of 14)	intron (NM_009667, intron 2 of 14)	14284.0	NM_009667	11717.0	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	12.59	10.6	18.5	30.36	11.2	13.66	3.17	3.54	5.62
Merged-chr7-25269192-1	chr7	25268692	25269692	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	1493.0	NM_001302811	71722.0	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	296.9	246.98	198.87	253.02	200.13	154.33	294.68	298.46	164.88
Merged-chr16-22537366-1	chr16	22536866	22537866	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-5182.0	NR_106170	102465887.0		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	5.72	3.23	4.62	4.72	4.67	4.02	6.34	2.21	6.25
Merged-chr1-178360880-2	chr1	178360373	178361373	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-23058.0	NR_149827	51810.0	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	6.86	3.23	5.55	2.02	5.13	2.41	1.06	3.1	1.25
Merged-chr1-166793253-1	chr1	166792753	166793753	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-111408.0	NM_001347135	240894.0	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	2.29	2.76	4.62	6.07	7.46	3.22	3.17	6.19	5.0
Merged-chr9-116146576-2	chr9	116146079	116147079	+	618.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	28784.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	82.38	142.84	123.02	97.16	98.43	125.39	39.08	30.95	31.23
Merged-chr11-11559475-1	chr11	11558975	11559975	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68363.0	NM_001305143	102631730.0	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	11.44	10.6	2.77	8.77	9.8	6.43	13.73	9.29	6.87
Merged-chr11-20632857-1	chr11	20632357	20633357	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	880.0	NM_001038625	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	173.33	146.99	120.24	189.6	132.02	129.41	155.26	167.14	118.04
Merged-chr18-52599837-1	chr18	52599337	52600337	+	618.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16078.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	4.0	2.76	1.85	4.72	1.4	2.41	7.39	7.07	1.25
Merged-chr11-51816039-2	chr11	51815547	51816547	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41434.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	14.3	9.68	21.27	15.52	9.33	14.47	8.45	8.84	6.87
Merged-chr7-102927308-1	chr7	102926808	102927808	+	618.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_147089)	promoter-TSS (NM_147089)	-322.0	NM_147089	259093.0	Mm.377837	NM_147089	ENSMUSG00000073963	Olfr572	MOR10-2	olfactory receptor 572	protein-coding	0.57	5.07	0.0	4.72	2.8	1.61	3.17	3.54	2.5
Merged-chr17-44256761-2	chr17	44256242	44257242	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172621, intron 4 of 5)	intron (NM_172621, intron 4 of 5)	68170.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	2.86	1.84	5.55	1.35	3.73	0.0	2.11	2.21	2.5
Merged-chr9-72458438-2	chr9	72457942	72458942	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009359, exon 12 of 12)	3' UTR (NM_009359, exon 12 of 12)	19913.0	NM_008613	17427.0	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	4.58	3.23	0.0	8.1	1.87	3.22	4.22	3.54	1.25
Merged-chr3-88150792-1	chr3	88150292	88151292	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	8420.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	30.89	23.96	37.0	30.36	25.19	27.33	28.52	21.22	24.98
Merged-chr1-180814763-1	chr1	180814263	180815263	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_008210	15078.0	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	66.36	81.1	96.2	48.58	50.85	47.42	59.15	39.8	30.6
Merged-chr1-91179917-1	chr1	91179417	91180417	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178401)	promoter-TSS (NM_178401)	95.0	NM_001168392	51801.0	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	4.0	5.53	1.85	6.75	1.4	4.82	3.17	3.98	5.0
Merged-chr12-80129716-2	chr12	80129193	80130193	+	617.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033514, intron 2 of 2)	intron (NR_033514, intron 2 of 2)	3151.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	12.01	24.42	17.57	21.59	9.8	20.09	22.18	28.74	26.85
Merged-chr8-10923693-1	chr8	10923193	10924193	+	617.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_030715)	TTS (NR_030715)	4764.0	NR_030715	665306.0	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	14.87	12.44	14.8	28.34	4.2	12.06	14.79	6.19	9.99
Merged-chr19-40662092-3	chr19	40661651	40662651	+	617.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	2381.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	116.7	139.62	127.64	161.93	129.69	111.73	152.09	173.33	116.79
Merged-chr3-129270211-1	chr3	129269711	129270711	+	617.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007934, exon 20 of 20)	3' UTR (NM_007934, exon 20 of 20)	56279.0	NM_001042502	18741.0	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	7.44	4.15	0.0	3.37	0.0	3.22	1.06	5.31	3.75
Merged-chr1-44042360-3	chr1	44041840	44042840	+	617.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	-22334.0	NM_001013799	433294.0	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	8.58	3.69	11.1	6.75	6.06	4.82	3.17	3.1	7.49
Merged-chr9-107545790-1	chr9	107545290	107546290	+	617.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_018879)	TTS (NM_018879)	-1520.0	NM_053253	114602.0	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	6.29	9.22	1.85	4.72	2.33	4.02	12.67	2.21	8.74
Merged-chr17-56473661-2	chr17	56473170	56474170	+	617.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	2810.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	11.44	5.53	7.4	10.12	6.53	2.41	19.01	7.07	4.37
Merged-chr11-96963779-2	chr11	96963271	96964271	+	617.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_003293, exon 6 of 6)	non-coding (NR_003293, exon 6 of 6)	13917.0	NM_030220	78912.0	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	5.15	5.07	11.1	16.19	6.06	1.61	6.34	1.77	7.49
Merged-chr8-84782757-2	chr8	84782243	84783243	+	617.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 1 of 9)	(CAAAA)n|Simple_repeat|Simple_repeat	-8374.0	NM_001297601	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	16.59	16.59	11.1	9.45	14.0	24.11	1.06	0.0	8.12
Merged-chr6-83416519-1	chr6	83416019	83417019	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-15417.0	NR_105793	102465194.0		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	22.88	15.67	21.27	26.31	20.53	21.7	17.96	22.99	7.49
Merged-chr4-87863437-2	chr4	87862938	87863938	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-57115.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	6.29	9.22	7.4	7.42	4.2	6.43	4.22	6.19	1.25
Merged-chr9-32137945-2	chr9	32137428	32138428	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001195632, intron 2 of 21)	intron (NM_001195632, intron 2 of 21)	21792.0	NM_001195632	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	9.72	19.35	6.47	6.75	5.13	9.65	14.79	11.94	7.49
Merged-chr9-74991381-2	chr9	74990893	74991893	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153584, intron 1 of 11)	Lx10|LINE|L1	15282.0	NM_153584	235493.0	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	8.01	9.68	8.32	6.75	11.2	5.63	10.56	13.27	2.5
Merged-chr2-28466291-1	chr2	28465791	28466791	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027040)	promoter-TSS (NM_027040)	33.0	NM_027040	69327.0	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.57	3.69	5.55	2.7	3.27	3.22	1.06	1.77	0.0
Merged-chr5-17815499-2	chr5	17814999	17815999	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159557, intron 5 of 15)	intron (NM_001159557, intron 5 of 15)	20397.0	NM_001159555	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	13.16	18.43	4.62	9.45	11.2	0.8	4.22	11.5	8.12
Merged-chr16-55964692-2	chr16	55964187	55965187	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1588.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	7.44	5.99	5.55	6.07	5.6	3.22	4.22	3.1	7.49
Merged-chr11-72782741-2	chr11	72782237	72783237	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001024926, exon 3 of 4)	exon (NM_001024926, exon 3 of 4)	13102.0	NM_001024926	192986.0	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	20.02	16.13	11.1	16.19	11.66	24.11	15.84	12.82	9.99
Merged-chr9-47721226-1	chr9	47720726	47721726	+	617.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	96982.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	4.58	1.38	0.0	0.67	0.0	0.0	8.45	4.42	8.12
Merged-chr1-170714547-1	chr1	170714047	170715047	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 15 of 15)	L1_Mus2|LINE|L1	70015.0	NM_177068	320078.0	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	2.86	3.23	3.7	8.1	0.93	8.84	7.39	3.1	4.37
Merged-chr16-52450728-1	chr16	52450228	52451228	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	2353.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	3.43	0.46	3.7	2.7	3.73	5.63	1.06	1.33	4.37
Merged-chr17-12119957-1	chr17	12119457	12120457	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026644, intron 1 of 8)	intron (NM_026644, intron 1 of 8)	673.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	10.3	8.75	6.47	22.27	16.79	12.86	8.45	7.96	9.37
Merged-chr10-99181170-1	chr10	99180670	99181670	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153333, intron 11 of 12)	intron (NR_153333, intron 11 of 12)	73035.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	205.37	231.31	110.07	280.68	177.27	107.71	203.84	247.61	74.32
Merged-chr7-127110814-2	chr7	127110327	127111327	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133686, intron 1 of 3)	intron (NM_133686, intron 1 of 3)	11202.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	7.44	3.23	0.0	7.42	1.4	4.82	6.34	0.44	5.0
Merged-chr6-90515283-2	chr6	90514770	90515770	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35523.0	NM_001356412	107747.0	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	4.0	2.3	0.0	2.02	1.4	1.61	2.11	0.0	0.0
Merged-chr7-6152434-1	chr7	6151934	6152934	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3537.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	24.03	37.32	22.2	43.18	29.86	31.35	29.57	22.55	31.23
Merged-chr11-115158168-1	chr11	115157668	115158668	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	3990.0	NM_021411	58222.0	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	16.02	7.83	25.9	7.42	10.73	9.65	19.01	11.94	9.99
Merged-chr8-66497409-2	chr8	66496913	66497913	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10883.0	NM_001357208	66282.0	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	11.44	5.53	0.0	2.7	3.27	1.61	5.28	1.33	3.75
Merged-chr2-34913389-1	chr2	34912889	34913889	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028716, intron 1 of 14)	CpG	587.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	20.59	9.68	1.85	16.87	16.79	6.43	19.01	21.22	5.62
Merged-chr3-61268911-1	chr3	61268411	61269411	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95596.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	8.58	12.44	1.85	9.45	7.93	8.04	0.0	1.77	2.5
Merged-chr4-57954064-1	chr4	57953564	57954564	+	617.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011660, intron 1 of 4)	intron (NM_011660, intron 1 of 4)	2347.0	NM_011660	22166.0	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	65.21	85.25	56.42	47.23	52.25	70.73	158.43	159.62	91.18
Merged-chr16-10987640-2	chr16	10987147	10988147	+	617.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	5474.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	37.76	51.15	37.92	29.69	27.06	47.42	42.25	45.54	27.48
Merged-chr6-17696551-1	chr6	17696051	17697051	+	617.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	intron (NM_001289624, intron 1 of 15)	2557.0	NM_001289625	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	13.73	5.07	0.0	8.1	4.67	4.02	4.22	3.54	5.0
Merged-chr11-55098898-3	chr11	55098385	55099385	+	617.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010299, intron 1 of 3)	intron (NM_010299, intron 1 of 3)	900.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	30.89	35.94	19.42	23.62	24.26	33.76	49.64	40.68	26.23
Merged-chr17-87561126-2	chr17	87560625	87561625	+	617.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74854.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	12.59	9.22	3.7	17.54	12.13	9.65	29.57	26.53	12.49
Merged-chr7-123200943-3	chr7	123200449	123201449	+	617.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13917.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	9.72	18.89	14.8	12.14	7.0	4.82	13.73	7.96	2.5
Merged-chr2-27692851-3	chr2	27692343	27693343	+	617.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	15642.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	52.06	60.36	68.45	58.03	46.18	81.18	55.98	54.39	38.72
Merged-chr4-86898932-2	chr4	86898437	86899437	+	617.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290541, intron 3 of 4)	intron (NM_001290541, intron 3 of 4)	24523.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	10.87	12.44	12.02	23.62	9.8	23.31	11.62	2.21	6.25
Merged-chr7-141060975-2	chr7	141060496	141061496	+	617.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177897)	promoter-TSS (NM_177897)	-278.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	5.15	0.92	3.7	4.72	2.33	4.02	2.11	0.0	2.5
Merged-chr10-111422285-1	chr10	111421785	111422785	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C|LTR|ERVK	-50942.0	NM_001358932	53605.0	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	5.72	7.37	9.25	8.77	5.13	13.66	11.62	9.29	4.37
Merged-chr4-133631616-2	chr4	133631098	133632098	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	intron (NM_001017968, intron 1 of 7)	1831.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	69.79	70.96	74.92	90.41	105.43	114.14	83.44	90.2	53.71
Merged-chrX-101268929-1	chrX	101268429	101269429	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013563)	promoter-TSS (NM_013563)	-674.0	NM_013563	16186.0	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	25.17	22.12	11.1	17.54	17.26	9.65	30.63	26.09	19.36
Merged-chr16-23195821-1	chr16	23195321	23196321	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155420, intron 2 of 2)	MTE-int|LTR|ERVL-MaLR	20541.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	5.15	1.84	1.85	8.77	3.27	6.43	2.11	2.21	8.74
Merged-chr10-127569635-2	chr10	127569125	127570125	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008512, intron 34 of 88)	intron (NM_008512, intron 34 of 88)	-35066.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	12.01	10.14	24.05	13.49	9.33	12.06	12.67	12.38	20.61
Merged-chr4-136889985-1	chr4	136889485	136890485	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007574, exon 3 of 3)	3' UTR (NM_007574, exon 3 of 3)	2929.0	NM_007574	12262.0	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	73.22	96.3	155.39	41.83	65.78	118.16	147.87	133.53	112.42
Merged-chr12-80001944-1	chr12	80001444	80002444	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65680.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	4.58	2.3	7.4	6.75	2.8	3.22	4.22	1.33	2.5
Merged-chr5-118358677-1	chr5	118358177	118359177	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	113450.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	2.86	2.3	5.55	3.37	3.27	0.0	3.17	3.54	6.25
Merged-chr8-70014495-1	chr8	70013995	70014995	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-18111.0	NM_145596	234366.0	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	3.43	5.07	3.7	7.42	2.33	1.61	1.06	4.42	5.0
Merged-chr12-65111708-1	chr12	65111208	65112208	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178912, intron 14 of 22)	RLTR18|LTR|ERVK	36102.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	3.43	2.76	5.55	4.05	1.87	5.63	4.22	1.33	6.25
Merged-chr5-14515084-1	chr5	14514584	14515584	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_011995, exon 1 of 25)	5' UTR (NM_011995, exon 1 of 25)	166.0	NM_001110796	26875.0	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	2.29	0.46	0.0	2.7	0.0	4.82	2.11	0.0	2.5
Merged-chr5-20674699-1	chr5	20674199	20675199	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 22 of 22)	intron (NM_001170746, intron 22 of 22)	207425.0	NM_172992	68770.0	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.0	1.84	1.85	2.7	3.73	1.61	1.06	3.98	1.25
Merged-chr2-84888850-1	chr2	84888350	84889350	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2158.0	NM_199223	269295.0	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	2.29	0.0	3.7	2.02	1.4	0.0	4.22	2.65	0.62
Merged-chr11-95347689-1	chr11	95347189	95348189	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172543, intron 1 of 7)	intron (NM_172543, intron 1 of 7)	10671.0	NM_172543	215512.0	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	37.18	37.78	24.97	58.7	37.32	58.68	39.08	48.64	38.72
Merged-chr13-41501019-1	chr13	41500519	41501519	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13659.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.72	3.69	7.4	3.37	2.33	8.84	4.22	3.1	7.49
Merged-chr8-79407419-3	chr8	79406924	79407924	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7956.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	11.44	8.75	18.5	4.05	7.46	16.08	19.01	9.73	16.24
Merged-chr7-80639296-2	chr7	80638804	80639804	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040343, intron 3 of 4)	intron (NR_040343, intron 3 of 4)	3287.0	NR_040343	100504375.0	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	-	predicted gene 15880	ncRNA	72.08	49.3	22.2	38.46	24.26	34.56	20.07	30.95	31.23
Merged-chr16-4630826-1	chr16	4630326	4631326	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 21 of 27)	intron (NM_030205, intron 21 of 27)	-5880.0	NM_025571	66449.0	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	10.87	1.84	9.25	6.75	2.8	11.25	5.28	10.17	8.12
Merged-chr2-113475522-1	chr2	113475022	113476022	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 2 of 16)	intron (NM_001285459, intron 2 of 16)	34458.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.86	11.52	1.85	12.82	10.26	6.43	11.62	9.29	6.25
Merged-chr19-10284747-1	chr19	10284247	10285247	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	20130.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	12.01	5.99	11.1	11.47	5.6	12.06	4.22	2.65	5.0
Merged-chr19-47449101-2	chr19	47448589	47449589	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	MIR|SINE|MIR	15322.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	12.01	15.67	0.0	11.47	11.2	16.08	22.18	5.31	7.49
Merged-chr1-91035608-1	chr1	91035108	91036108	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111312, intron 1 of 12)	Lx7|LINE|L1	-17836.0	NM_001111311	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	69.22	59.44	35.15	34.41	26.59	21.7	32.74	35.82	18.74
Merged-chr4-138464101-2	chr4	138463603	138464603	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8955.0	NM_025451	66259.0	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	1.72	1.84	1.85	3.37	3.27	1.61	2.11	1.77	4.37
Merged-chr11-32536927-1	chr11	32536427	32537427	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	3661.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	52.63	49.76	51.8	89.06	58.31	82.79	90.83	49.96	43.09
Merged-chr11-118480909-2	chr11	118480424	118481424	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153103, intron 3 of 13)	MTA_Mm|LTR|ERVL-MaLR	4092.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	18.31	13.82	11.1	32.39	24.72	30.54	25.35	30.51	10.62
Merged-chr4-62205424-1	chr4	62204924	62205924	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290351, intron 1 of 3)	intron (NM_001290351, intron 1 of 3)	2778.0	NM_001290353	22696.0	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	5.72	1.38	0.0	8.77	11.2	6.43	12.67	4.42	6.87
Merged-chr9-116181823-1	chr9	116181323	116182323	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-6460.0	NM_029575	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	17.73	27.65	14.8	35.09	11.66	43.4	13.73	12.38	10.62
Merged-chr7-83399930-1	chr7	83399430	83400430	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185001.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	7.44	9.22	18.5	7.42	10.26	20.09	13.73	6.19	11.24
Merged-chr7-43539877-1	chr7	43539377	43540377	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-6706.0	NM_021293	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	4.0	5.07	3.7	6.75	1.87	1.61	4.22	5.75	3.12
Merged-chr1-88248807-1	chr1	88248307	88249307	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 27 of 41)	intron (NM_001281466, intron 27 of 41)	20601.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	8.01	13.82	7.4	12.82	8.86	8.84	13.73	7.52	13.74
Merged-chr4-62582758-1	chr4	62582258	62583258	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	22911.0	NM_019492	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	7.44	6.45	0.0	10.8	6.06	1.61	7.39	5.75	2.5
Merged-chr14-70791612-1	chr14	70791112	70792112	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	17231.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	1.72	1.84	6.47	0.0	0.93	6.43	20.07	16.36	36.85
Merged-chr12-105796200-1	chr12	105795700	105796700	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011112, intron 1 of 21)	intron (NM_011112, intron 1 of 21)	11503.0	NM_001347440	18789.0	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	22.31	34.1	38.85	15.52	22.39	35.37	35.91	17.69	25.61
Merged-chr6-114348426-1	chr6	114347926	114348926	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49510.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	2.29	5.99	0.0	3.37	2.33	1.61	0.0	1.33	1.25
Merged-chr2-145885392-1	chr2	145884892	145885892	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 12 of 12)	intron (NM_028724, intron 12 of 12)	-17849.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	29.75	25.34	37.92	37.78	36.39	51.44	45.42	48.2	19.36
Merged-chr18-4288794-1	chr18	4288294	4289294	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	64159.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	24.6	12.44	11.1	13.49	12.6	17.68	13.73	6.63	11.87
Merged-chr9-122125864-2	chr9	122125357	122126357	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357776, intron 1 of 5)	intron (NM_001357776, intron 1 of 5)	8398.0	NM_001357776	20623.0	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	6.86	14.28	6.47	20.92	15.86	9.65	23.24	15.92	21.23
Merged-chr15-57037968-1	chr15	57037468	57038468	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	227193.0	NM_001357930	210463.0	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	6.29	6.45	9.25	15.52	18.66	11.25	9.51	8.4	12.49
Merged-chr9-77734653-1	chr9	77734153	77735153	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19882.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	23.45	14.28	16.65	23.62	27.99	34.56	11.62	6.63	3.75
Merged-chr10-54016356-1	chr10	54015856	54016856	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008548, intron 4 of 12)	intron (NM_008548, intron 4 of 12)	59440.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	2.29	3.23	5.55	4.05	5.13	1.61	4.22	1.77	3.75
Merged-chr14-74764309-1	chr14	74763809	74764809	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 19 of 19)	intron (NM_001033439, intron 19 of 19)	32012.0	NM_016903	13885.0	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	2.29	5.53	1.85	1.35	3.27	3.22	1.06	0.44	0.0
Merged-chr1-88290101-2	chr1	88289626	88290626	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12547.0	NM_198652	381280.0	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	10.3	8.75	3.7	6.07	9.33	17.68	10.56	6.63	24.36
Merged-chr10-105186817-1	chr10	105186317	105187317	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177368)	TTS (NM_177368)	387662.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	4.0	5.99	5.55	4.05	2.8	0.8	1.06	3.54	5.0
Merged-chr10-40448194-1	chr10	40447694	40448694	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291817, intron 4 of 11)	intron (NM_001291817, intron 4 of 11)	98886.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	9.72	9.22	7.4	12.14	13.53	16.88	11.62	5.75	8.12
Merged-chr1-62679670-1	chr1	62679170	62680170	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-23647.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	7.44	4.61	0.92	2.7	1.87	3.22	3.17	2.21	1.25
Merged-chrX-109139851-1	chrX	109139351	109140351	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	44444.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	32.61	28.11	13.87	20.92	20.53	32.96	23.24	24.32	21.86
Merged-chr14-52390361-1	chr14	52389861	52390861	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146271, exon 1 of 1)	exon (NM_146271, exon 1 of 1)	410.0	NM_146271	258268.0	Mm.377402	NM_146271	ENSMUSG00000063867	Olfr1511	MOR223-9	olfactory receptor 1511	protein-coding	6.29	4.15	2.77	4.72	1.87	3.22	4.22	0.44	0.62
Merged-chr5-114647491-1	chr5	114646991	114647991	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022017, intron 1 of 15)	intron (NM_022017, intron 1 of 15)	10930.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	20.59	12.44	14.8	14.17	9.8	20.9	24.29	12.82	4.37
Merged-chr19-3942406-1	chr19	3941906	3942906	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001161428, exon 6 of 10)	exon (NM_001161428, exon 6 of 10)	7220.0	NM_001161428	54445.0	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	10.3	10.14	12.95	13.49	8.4	18.49	13.73	16.8	11.24
Merged-chr9-118667658-1	chr9	118667158	118668158	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 8 of 27)	intron (NM_133721, intron 8 of 27)	-44034.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	70.93	79.25	82.32	89.06	67.18	84.4	84.49	90.64	56.21
Merged-chr6-94282772-1	chr6	94282272	94283272	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	1145.0	NM_010367	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	2.86	2.3	0.0	4.72	3.27	5.63	1.06	0.0	5.0
Merged-chr19-55719897-1	chr19	55719397	55720397	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17693.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.58	7.37	7.4	4.05	7.46	6.43	8.45	8.84	6.25
Merged-chr2-133457001-1	chr2	133456501	133457501	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95158.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	8.58	3.23	1.85	6.75	4.67	5.63	8.45	7.07	4.37
Merged-chr2-94265388-1	chr2	94264888	94265888	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3989.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	6.29	6.91	1.85	12.82	13.06	15.27	25.35	19.9	18.74
Merged-chr16-76561853-1	chr16	76561353	76562353	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	13058.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	4.0	2.3	0.0	2.7	1.4	1.61	3.17	0.0	2.5
Merged-chr15-72871468-1	chr15	72870968	72871968	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-61144.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.86	3.23	3.7	4.05	1.4	11.25	6.34	2.65	1.25
Merged-chr9-70049984-1	chr9	70049484	70050484	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR37B|LTR|ERV1	-11896.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	2.86	1.38	7.4	2.7	3.73	4.82	1.06	0.88	4.37
Merged-chr3-15586876-1	chr3	15586376	15587376	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-11811.0	NM_001173460	668101.0	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	4.0	1.84	0.0	2.02	7.46	0.0	8.45	5.75	5.0
Merged-chr18-61647277-2	chr18	61646754	61647754	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_029557)	TTS (NR_029557)	640.0	NR_029557	387163.0		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	2.86	2.76	0.0	3.37	1.87	1.61	3.17	2.21	8.12
Merged-chr3-108232317-1	chr3	108231817	108232817	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5718.0	NM_008596	17306.0	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	8.01	5.07	7.4	6.75	2.8	2.41	16.9	6.19	11.87
Merged-chr3-79177778-1	chr3	79177278	79178278	+	617.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-31903.0	NM_001099624	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	175.62	216.57	108.22	136.29	156.28	153.52	178.5	219.76	138.02
Merged-chr2-75701504-1	chr2	75701004	75702004	+	617.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132727, intron 1 of 1)	intron (NR_132727, intron 1 of 1)	3159.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	56.63	51.61	32.37	78.94	56.91	55.46	94.0	100.37	57.46
Merged-chr9-21017406-1	chr9	21016906	21017906	+	617.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010493, intron 1 of 6)	RSINE1|SINE|B4	1466.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	86.38	81.1	76.77	56.68	43.85	41.8	71.82	68.54	83.69
Merged-chr14-64794948-3	chr14	64794442	64795442	+	616.93335	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081177, intron 37 of 39)	intron (NM_001081177, intron 37 of 39)	142411.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	22.88	17.51	17.57	14.17	13.53	20.09	2.11	4.86	6.25
Merged-chr11-98777017-3	chr11	98776536	98777536	+	616.888855	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1659.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	187.06	151.6	110.99	197.69	141.35	143.07	180.61	232.58	144.89
Merged-chr7-90134557-2	chr7	90134050	90135050	+	616.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	intron (NM_001360867, intron 1 of 19)	4337.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	132.72	281.08	114.69	143.71	258.45	141.47	127.8	160.51	89.31
Merged-chr6-128846257-2	chr6	128845741	128846741	+	616.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19926.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	16.59	18.43	30.52	18.22	12.13	9.65	12.67	11.5	24.36
Merged-chr2-69778224-2	chr2	69777734	69778734	+	616.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	11252.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	9.15	13.36	14.8	16.19	19.59	12.86	23.24	16.8	19.36
Merged-chr1-85995024-1	chr1	85994524	85995524	+	616.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26918.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	2.29	4.61	10.17	4.72	2.33	8.04	2.11	6.19	4.37
Merged-chr6-145126586-1	chr6	145126086	145127086	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	Lx9|LINE|L1	4847.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	2.86	4.15	3.7	10.12	9.8	4.82	3.17	6.19	6.87
Merged-chr5-123019531-1	chr5	123019031	123020031	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	4457.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	28.03	23.5	22.2	25.64	16.79	36.97	21.12	19.46	11.87
Merged-chr2-28539327-1	chr2	28538827	28539827	+	616.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145836, intron 1 of 17)	intron (NM_001145836, intron 1 of 17)	5863.0	NM_001145836	19730.0	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	143.01	94.0	52.72	97.16	72.31	31.35	68.65	64.11	28.73
Merged-chr13-64100411-2	chr13	64099923	64100923	+	616.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 9 of 11)	intron (NM_001001321, intron 9 of 11)	-11222.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.57	4.61	0.0	3.37	3.73	0.0	3.17	0.88	2.5
Merged-chr5-125442163-5	chr5	125441631	125442631	+	616.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359486, intron 1 of 3)	intron (NM_001359486, intron 1 of 3)	563.0	NM_029752	76809.0	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	17.73	6.91	5.55	14.84	7.46	14.47	24.29	6.63	1.87
Merged-chr15-97945526-3	chr15	97945019	97946019	+	616.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18710.0	NM_001356508	380967.0	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	30.32	32.25	37.0	26.31	12.13	28.13	35.91	20.34	17.49
Merged-chr3-144678307-1	chr3	144677807	144678807	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42028.0	NM_001282042	54673.0	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	76.66	95.84	69.37	135.62	112.43	88.42	29.57	16.8	11.87
Merged-chr15-95827680-2	chr15	95827191	95828191	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155276, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	2381.0	NR_155277	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	248.27	207.35	147.99	116.73	104.96	82.79	171.1	171.56	69.32
Merged-chr16-10356292-1	chr16	10355792	10356792	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-25007.0	NR_126064	381033.0	Mm.263108	NR_126064	ENSMUSG00000116270	Gm1600	Gm1776	predicted gene 1600	ncRNA	3.43	13.82	20.35	7.42	10.73	14.47	10.56	5.31	8.12
Merged-chr2-16334501-1	chr2	16334001	16335001	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21803.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	17.16	9.68	17.57	17.54	20.06	12.86	6.34	12.38	19.98
Merged-chrX-159840008-1	chrX	159839508	159840508	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001135728)	promoter-TSS (NM_001135728)	-460.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	9.15	5.07	9.25	2.7	5.6	4.82	10.56	3.1	3.75
Merged-chr9-66359116-1	chr9	66358616	66359616	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	8666.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	66.36	129.94	41.62	85.01	107.3	54.66	95.06	99.49	60.58
Merged-chr2-102736769-1	chr2	102736269	102737269	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077514, intron 2 of 10)	intron (NM_001077514, intron 2 of 10)	9991.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	17.73	5.07	11.1	6.75	7.0	6.43	11.62	7.96	12.49
Merged-chr6-146913566-1	chr6	146913066	146914066	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355728, intron 1 of 30)	intron (NM_001355728, intron 1 of 30)	25072.0	NM_026221	67533.0	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	5.72	0.92	1.85	11.47	5.13	4.82	11.62	3.98	7.49
Merged-chr5-114934727-1	chr5	114934227	114935227	+	616.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359946, intron 3 of 4)	intron (NM_001359946, intron 3 of 4)	-7475.0	NM_028211	72357.0	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	10.3	4.61	24.05	2.7	3.73	7.23	13.73	5.31	7.49
Merged-chr7-30614623-2	chr7	30614132	30615132	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1898.0	NM_026815	109637.0	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	3.43	2.3	5.55	2.7	3.27	5.63	7.39	2.21	2.5
Merged-chr4-59786065-2	chr4	59785538	59786538	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2183.0	NM_001013577	66209.0	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	40.04	75.11	54.57	47.23	55.05	67.52	78.16	76.94	46.84
Merged-chr11-103218386-2	chr11	103217913	103218913	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177801)	promoter-TSS (NM_177801)	19.0	NM_177801	328019.0	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	13.16	9.68	7.4	9.45	6.06	9.65	11.62	7.96	8.74
Merged-chr1-178146689-2	chr1	178146193	178147193	+	616.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-40724.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	2.86	2.3	0.0	1.35	3.27	0.0	6.34	0.44	1.25
Merged-chr17-36220363-1	chr17	36219863	36220863	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30212.0	NM_008208	15043.0	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	8.01	7.83	7.4	6.07	4.2	4.82	6.34	1.33	2.5
Merged-chr6-59178294-1	chr6	59177794	59178794	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-30576.0	NM_001081145	68140.0	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	8.58	4.61	5.55	6.07	7.93	4.82	9.51	3.54	5.0
Merged-chrX-36254376-1	chrX	36253876	36254876	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	58472.0	NM_001358476	72693.0	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	1.14	2.76	1.85	4.72	1.4	1.61	1.06	0.0	0.0
Merged-chr12-81796738-1	chr12	81796238	81797238	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR18-int|LTR|ERVK	-15568.0	NM_001174107	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	1.14	2.3	1.85	1.35	2.8	0.0	5.28	0.88	1.25
Merged-chr10-39067172-2	chr10	39066670	39067670	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010681, intron 16 of 37)	B1F1|SINE|Alu	66730.0	NM_001359442	66337.0	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	4.58	3.69	0.0	2.02	1.87	1.61	1.06	2.65	2.5
Merged-chr5-108034366-1	chr5	108033866	108034866	+	616.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31308.0	NM_001359088	17765.0	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	2.86	2.3	7.4	2.7	2.33	4.02	4.22	1.77	2.5
Merged-chr13-102021837-1	chr13	102021337	102022337	+	616.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-253620.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	6.86	5.53	7.4	4.05	7.0	1.61	4.22	3.98	5.0
Merged-chr19-15998323-2	chr19	15997818	15998818	+	616.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	13243.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.43	5.99	1.85	9.45	2.8	5.63	6.34	10.61	7.49
Merged-chr13-23436430-3	chr13	23435946	23436946	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5429.0	NR_015492	320842.0	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	14.87	11.52	13.87	14.17	4.67	12.86	13.73	8.4	13.74
Merged-chr17-44077048-3	chr17	44076560	44077560	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1742.0	NM_001168620	83965.0	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	11.44	11.06	12.95	2.7	0.47	2.41	9.51	7.07	6.25
Merged-chr13-49200209-3	chr13	49199699	49200699	+	616.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12652.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	346.66	308.73	186.84	425.75	342.42	307.85	356.99	420.5	179.24
Merged-chr4-141507048-3	chr4	141506573	141507573	+	616.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347235, intron 3 of 14)	intron (NM_001347235, intron 3 of 14)	31524.0	NM_001347235	56381.0	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	spen family transcription repressor	protein-coding	119.56	86.63	70.3	164.63	100.3	64.3	159.48	111.43	70.57
Merged-chr13-58457145-2	chr13	58456639	58457639	+	616.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53796.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	36.04	24.42	26.82	33.74	22.39	29.74	26.4	34.49	18.11
Merged-chr19-34520865-2	chr19	34520377	34521377	+	616.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	6597.0	NM_001111100	16889.0	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	153.88	187.08	144.29	159.23	129.22	152.72	217.57	204.28	121.78
Merged-chr13-95390410-2	chr13	95389899	95390899	+	616.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15042.0	NM_025630	66549.0	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	1.72	3.23	5.55	1.35	4.2	1.61	4.22	0.0	3.12
Merged-chr2-93418541-2	chr2	93418029	93419029	+	616.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001136055)	TTS (NM_001136055)	3478.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.57	0.0	1.85	0.0	2.8	4.02	2.11	0.44	0.0
Merged-chr2-4446181-3	chr2	4445623	4446623	+	616.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 2 of 23)	intron (NM_001177843, intron 2 of 23)	45147.0	NM_001177843	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	22.31	16.13	17.57	14.17	9.33	8.04	31.69	24.32	18.74
Merged-chr16-98041868-2	chr16	98041361	98042361	+	616.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	40578.0	NR_015491	320586.0	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	3.43	2.76	3.7	1.35	3.27	0.8	0.0	1.77	1.25
Merged-chr1-120247439-3	chr1	120246903	120247903	+	616.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085409, intron 2 of 5)	L1MB7|LINE|L1	17877.0	NM_133186	68428.0	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	8.01	5.07	0.0	12.82	5.6	10.45	4.22	5.31	5.0
Merged-chr15-85610769-3	chr15	85610292	85611292	+	616.033325	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28971.0	NM_009528	22422.0	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	3.43	2.76	11.1	6.07	2.8	3.22	1.06	1.77	2.5
Merged-chr10-81178808-1	chr10	81178308	81179308	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028549)	promoter-TSS (NR_028549)	-153.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	8.58	11.52	37.0	8.77	7.46	6.43	9.51	10.17	9.99
Merged-chr15-77775657-1	chr15	77775157	77776157	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022410, intron 21 of 40)	intron (NM_022410, intron 21 of 40)	-18647.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.0	2.76	1.85	9.45	2.33	0.0	3.17	3.1	3.75
Merged-chr15-82342207-1	chr15	82341707	82342707	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177391, intron 1 of 1)	intron (NM_177391, intron 1 of 1)	1028.0	NM_177391	338368.0	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	14.3	20.27	8.32	27.66	17.26	29.74	20.07	14.59	8.74
Merged-chr16-75769164-1	chr16	75768664	75769664	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-2346.0	NM_030201	110920.0	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	6.29	5.53	4.62	14.84	9.8	12.06	9.51	9.29	9.99
Merged-chr2-44345631-1	chr2	44345131	44346131	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-280307.0	NR_040622	320872.0	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	4.0	3.69	0.0	1.35	0.47	1.61	3.17	5.31	1.25
Merged-chrX-56374598-1	chrX	56374098	56375098	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183030)	promoter-TSS (NM_183030)	81.0	NM_183030	320237.0	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	protein-coding	0.57	2.76	5.55	2.02	0.0	4.02	3.17	5.75	0.0
Merged-chr10-21188905-1	chr10	21188405	21189405	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152786)	TTS (NR_152786)	1961.0	NR_152786	102636600.0	Mm.227606	NR_152786	ENSMUSG00000111005	Gm33619	-	predicted gene, 33619	ncRNA	2.29	7.37	7.4	3.37	2.8	3.22	4.22	5.75	6.25
Merged-chr2-48619275-1	chr2	48618775	48619775	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-194834.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.29	2.3	3.7	4.05	2.8	4.82	5.28	3.1	2.5
Merged-chrX-37084783-1	chrX	37084283	37085283	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026055, intron 1 of 2)	intron (NM_026055, intron 1 of 2)	439.0	NM_026055	67248.0	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	34.9	39.17	21.27	35.09	48.52	28.94	32.74	30.51	33.1
Merged-chr3-86136001-1	chr3	86135501	86136501	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	2857.0	NR_004417	19870.0		NR_004417	ENSMUSG00000064984	Snord73a	Rnu73a|U73a	small nucleolar RNA, C/D box U73A	snoRNA	6.86	5.53	18.5	6.75	3.27	4.82	10.56	2.65	6.87
Merged-chr11-8612290-1	chr11	8611790	8612790	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083587, intron 2 of 30)	MLT1A0|LTR|ERVL-MaLR	52245.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	4.0	8.29	12.95	11.47	8.86	10.45	7.39	4.42	8.12
Merged-chr12-91606803-1	chr12	91606303	91607303	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16316.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	8.58	3.69	3.7	6.07	2.33	3.22	3.17	3.98	2.5
Merged-chrX-73758108-1	chrX	73757608	73758608	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019587, intron 1 of 34)	intron (NM_019587, intron 1 of 34)	1005.0	NM_019587	140571.0	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	2.29	2.3	5.55	3.37	1.87	0.0	5.28	1.33	2.5
Merged-chr1-58697858-1	chr1	58697358	58698358	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1869.0	NM_175370	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	5.15	2.76	6.47	0.0	3.27	7.23	4.22	1.77	4.37
Merged-chr3-14667343-1	chr3	14666843	14667843	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie1|DNA|hAT-Charlie	25616.0	NM_024495	71934.0	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	4.58	2.3	1.85	10.8	1.87	4.82	2.11	1.77	7.49
Merged-chr3-127932643-1	chr3	127932143	127933143	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040552, intron 3 of 4)	intron (NR_040552, intron 3 of 4)	16472.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	1.14	2.3	3.7	2.7	4.2	5.63	2.11	3.98	3.75
Merged-chr4-86666958-1	chr4	86666458	86667458	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	B1F|SINE|Alu	3101.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	41.19	23.96	24.97	36.43	21.93	31.35	17.96	14.59	11.24
Merged-chr5-16411766-1	chr5	16411266	16412266	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-141729.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.15	6.45	1.85	5.4	7.93	6.43	3.17	5.75	1.25
Merged-chr2-77268731-1	chr2	77268231	77269231	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	11861.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	6.29	4.61	8.32	5.4	5.13	8.04	4.22	4.86	9.99
Merged-chr10-26779552-1	chr10	26779052	26780052	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 1 of 14)	intron (NM_176837, intron 1 of 14)	7040.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	52.06	56.68	52.72	70.17	45.72	56.27	41.19	34.49	26.85
Merged-chrUn_JH584304-88157-1	chrUn_JH584304	87657	88657	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-28468.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	10.56	15.03	0.0
Merged-chr10-85388921-1	chr10	85388421	85389421	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	2107.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	1.14	0.92	3.7	0.0	0.93	4.02	15.84	11.5	13.12
Merged-chr13-110368652-2	chr13	110368173	110369173	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11501.0	NM_177713	238875.0	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	13.16	3.69	0.92	5.4	8.4	1.61	8.45	4.86	8.74
Merged-chr10-93791235-1	chr10	93790735	93791735	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-40320.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	1.14	0.46	0.0	0.0	0.47	0.0	10.56	9.29	1.25
Merged-chr13-55587133-1	chr13	55586633	55587633	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-6002.0	NM_026211	67511.0	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	4.58	3.23	4.62	0.0	1.4	3.22	3.17	0.88	3.75
Merged-chr8-123950279-1	chr8	123949779	123950779	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1014.0	NM_172288	234865.0	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	52.63	56.22	37.92	35.76	27.99	65.11	60.2	44.22	46.22
Merged-chr6-125661718-1	chr6	125661218	125662218	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011708, intron 38 of 51)	intron (NM_011708, intron 38 of 51)	-28701.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.57	2.3	0.0	3.37	2.8	0.0	2.11	1.77	1.25
Merged-chr19-53264520-1	chr19	53264020	53265020	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9315.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	5.72	0.46	1.85	6.75	2.8	1.61	3.17	0.0	2.5
Merged-chr2-71526870-1	chr2	71526370	71527370	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-2575.0	NM_010053	13390.0	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	6.86	5.53	2.77	4.05	2.8	0.0	3.17	0.44	0.0
Merged-chr12-103337929-1	chr12	103337429	103338429	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023049, intron 3 of 9)	intron (NM_023049, intron 3 of 9)	18072.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	125.85	123.03	138.74	101.21	84.9	90.02	192.23	151.66	78.07
Merged-chr11-23979520-2	chr11	23979024	23980024	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84254.0	NM_172555	216578.0	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	4.0	2.76	0.0	6.07	0.47	0.0	3.17	1.33	0.0
Merged-chr8-11297656-1	chr8	11297156	11298156	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-15149.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	1.14	0.92	3.7	3.37	1.87	0.0	0.0	0.0	5.0
Merged-chr16-23626002-2	chr16	23625498	23626498	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16079.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	6.86	5.07	5.55	4.05	4.67	1.61	1.06	2.21	8.74
Merged-chr6-29248568-1	chr6	29248068	29249068	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23920.0	NM_001190461	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	9.72	5.07	7.4	15.52	5.13	4.82	10.56	4.86	6.25
Merged-chr15-57885972-1	chr15	57885472	57886472	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024207, intron 1 of 7)	intron (NM_024207, intron 1 of 7)	6446.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	38.9	29.03	37.0	35.76	24.72	28.13	47.53	32.72	33.72
Merged-chrX-141228369-1	chrX	141227869	141228869	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053185, intron 5 of 44)	intron (NM_053185, intron 5 of 44)	245707.0	NM_053185	94216.0	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	3.43	1.84	1.85	1.35	0.93	3.22	1.06	2.65	0.0
Merged-chr6-38875180-1	chr6	38874680	38875680	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	1010.0	NM_010433	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	137.29	188.0	148.92	149.11	148.82	151.92	185.89	173.77	108.04
Merged-chr11-68030837-1	chr11	68030337	68031337	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	HAL1ME|LINE|L1	64379.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	7.44	2.76	5.55	6.75	1.4	4.82	6.34	6.19	5.62
Merged-chr11-61470349-1	chr11	61469849	61470849	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15082.0	NM_001347545	76293.0	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	84.66	50.23	60.12	58.03	45.25	63.5	63.37	55.71	41.84
Merged-chr10-60009771-1	chr10	60009271	60010271	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026937, intron 3 of 10)	intron (NM_026937, intron 3 of 10)	6444.0	NM_001199187	69090.0	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	5.15	11.98	20.35	14.84	7.46	8.04	5.28	4.86	7.49
Merged-chr14-70519823-1	chr14	70519323	70520323	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_033241, intron 1 of 19)	CpG	437.0	NM_009755	12153.0	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	10.87	2.3	0.0	8.77	2.33	1.61	7.39	1.77	5.0
Merged-chr11-58235435-1	chr11	58234935	58235935	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20458.0	NM_019440	54396.0	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	4.58	1.84	1.85	3.37	2.8	1.61	4.22	0.44	1.87
Merged-chr9-66131111-1	chr9	66130611	66131611	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	4500.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	18.31	25.34	32.37	21.59	18.19	39.39	17.96	30.51	38.72
Merged-chr9-57504035-1	chr9	57503535	57504535	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133982)	promoter-TSS (NM_133982)	-67.0	NM_133982	102614.0	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	4.58	2.3	5.55	7.42	1.4	9.65	5.28	3.1	5.0
Merged-chr12-34712595-1	chr12	34712095	34713095	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-183706.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	42.9	89.85	55.5	69.5	55.05	49.83	70.76	69.86	50.59
Merged-chr5-96902943-2	chr5	96902441	96903441	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-18331.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	6.86	4.15	1.85	6.07	6.53	4.02	6.34	4.86	2.5
Merged-chr7-89332360-1	chr7	89331860	89332860	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 2 of 14)	intron (NM_001360746, intron 2 of 14)	6427.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.0	3.69	4.62	7.42	7.93	8.04	3.17	5.75	3.75
Merged-chr19-10100902-1	chr19	10100402	10101402	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	601.0	NM_019699	56473.0	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	7.44	3.69	0.0	6.75	4.2	1.61	4.22	7.07	7.49
Merged-chr6-92209925-1	chr6	92209425	92210425	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030081, intron 2 of 11)	intron (NM_030081, intron 2 of 11)	4886.0	NM_030081	78287.0	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	3.43	5.53	5.55	16.87	12.6	18.49	12.67	16.36	11.87
Merged-chr11-26165090-1	chr11	26164590	26165590	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-37150.0	NR_105791	102466154.0		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	24.03	20.27	12.02	21.59	24.26	13.66	21.12	28.3	21.23
Merged-chrX-104418125-1	chrX	104417625	104418625	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-4279.0	NM_009592	11306.0	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	1.14	2.3	3.7	2.7	3.73	4.82	2.11	0.44	0.0
Merged-chr1-74323096-1	chr1	74322596	74323596	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9514.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	9.15	4.15	7.4	7.42	0.47	5.63	9.51	6.19	2.5
Merged-chr17-35166855-1	chr17	35166355	35167355	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1978.0	NM_020027	53761.0	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	37.18	25.8	33.3	17.54	7.0	24.92	15.84	9.73	26.85
Merged-chr7-44554638-1	chr7	44554138	44555138	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285519)	promoter-TSS (NM_001285519)	-673.0	NM_001285517	22260.0	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	133.29	192.15	123.94	122.12	125.02	166.38	111.96	163.6	111.17
Merged-chr15-94544517-1	chr15	94544017	94545017	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029926, intron 1 of 11)	ORR1A4|LTR|ERVL-MaLR	857.0	NM_029926	266632.0	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	93.24	146.07	135.04	76.24	64.84	90.83	127.8	155.2	97.43
Merged-chr17-36016554-1	chr17	36016054	36017054	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	4006.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	2.86	3.23	18.5	29.01	25.66	12.86	9.51	8.84	6.87
Merged-chr9-20699333-1	chr9	20698833	20699833	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357639, intron 1 of 5)	LTR33A_|LTR|ERVL	27670.0	NM_001357635	244723.0	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	6.86	1.84	3.7	2.02	0.47	8.04	4.22	3.98	2.5
Merged-chr2-59881108-1	chr2	59880608	59881608	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159636, intron 1 of 10)	Lx8|LINE|L1	1498.0	NM_001159636	72137.0	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.0	5.53	0.0	0.67	2.8	8.04	4.22	4.42	0.62
Merged-chr14-55734094-1	chr14	55733594	55734594	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	11590.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	41.76	45.62	25.9	80.97	33.59	51.44	55.98	40.24	36.22
Merged-chr19-9137287-1	chr19	9136787	9137787	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1721.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	6.86	2.3	8.32	4.05	2.8	0.0	0.0	3.54	5.0
Merged-chr1-134303800-1	chr1	134303300	134304300	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001144855, intron 24 of 28)	intron (NM_001144855, intron 24 of 28)	13796.0	NM_031189	17928.0	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	17.16	6.45	6.47	61.4	43.85	81.18	90.83	59.69	69.95
Merged-chr1-67359954-1	chr1	67359454	67360454	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	236927.0	NM_001080809	227231.0	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	2.86	3.69	0.0	12.82	7.0	2.41	6.34	6.63	0.62
Merged-chr1-178144925-1	chr1	178144425	178145425	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155538, intron 17 of 21)	intron (NR_155538, intron 17 of 21)	-42492.0	NM_024282	78825.0	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	3.43	4.61	7.4	6.75	5.13	4.02	1.06	7.52	3.12
Merged-chrUn_JH584304-66794-1	chrUn_JH584304	66294	67294	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_1B-I_MM-int|LTR|ERVK	-7105.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	53.87	30.51	0.0
Merged-chr9-85410841-1	chr9	85410341	85411341	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83691.0	NM_001160379	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	4.58	2.3	5.55	6.07	2.33	1.61	7.39	3.98	5.0
Merged-chr13-94156130-1	chr13	94155630	94156630	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 2 of 3)	intron (NM_172589, intron 2 of 3)	98334.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.0	2.76	7.4	9.45	8.86	3.22	3.17	5.75	5.0
Merged-chr4-53076258-1	chr4	53075758	53076758	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013454, intron 20 of 49)	MTD|LTR|ERVL-MaLR	64378.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	6.29	6.91	7.4	10.8	2.8	10.45	7.39	3.54	7.49
Merged-chr17-34093485-2	chr17	34093000	34094000	+	616.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_046183, intron 2 of 4)	intron (NR_046183, intron 2 of 4)	1121.0	NM_008206	15001.0	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	40.62	26.73	16.65	10.12	3.27	0.8	21.12	20.34	18.74
Merged-chr2-103565385-1	chr2	103564885	103565885	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178890)	promoter-TSS (NM_178890)	-925.0	NM_178890	99382.0	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	5.72	3.69	0.0	4.72	1.4	3.22	8.45	0.0	5.0
Merged-chr13-34693285-1	chr13	34692785	34693785	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER117|DNA|hAT-Charlie	40362.0	NR_105041	101056149.0	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	-	predicted gene 15908	ncRNA	6.29	2.76	3.7	2.7	9.33	8.04	1.06	2.21	9.99
Merged-chr7-141048981-2	chr7	141048485	141049485	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-12289.0	NM_177897	330671.0	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	16.59	12.9	14.8	20.92	7.46	18.49	12.67	9.29	23.73
Merged-chr6-120019440-1	chr6	120018940	120019940	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198703, intron 1 of 27)	polypurine|Low_complexity|Low_complexity	14871.0	NR_030487	735290.0		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	14.87	28.11	13.87	16.19	10.73	13.66	20.07	19.01	13.74
Merged-chr9-53650882-1	chr9	53650382	53651382	+	616.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161618, intron 3 of 17)	intron (NM_001161618, intron 3 of 17)	16625.0	NM_001161618	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	10.87	18.43	9.25	8.77	15.39	22.51	9.51	9.73	5.0
Merged-chr12-80116484-1	chr12	80115984	80116984	+	616.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3471.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	177.91	165.42	96.2	155.86	110.56	97.26	145.75	158.3	88.06
Merged-chr10-21601121-3	chr10	21600624	21601624	+	615.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027968, intron 2 of 2)	intron (NR_027968, intron 2 of 2)	7979.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	8.58	5.99	5.55	12.14	3.73	9.65	11.62	6.63	1.25
Merged-chr9-25152785-2	chr9	25152269	25153269	+	615.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	-988.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	110.98	141.92	112.84	110.65	90.5	93.24	140.47	133.53	73.07
Merged-chr11-98767505-2	chr11	98766998	98767998	+	615.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145434)	TTS (NM_145434)	7879.0	NM_145434	217166.0	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	8.58	1.84	6.47	1.35	3.27	3.22	5.28	0.88	8.74
Merged-chr10-41883866-3	chr10	41883382	41884382	+	615.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-3557.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	57.78	57.6	61.05	48.58	30.32	66.71	39.08	37.58	71.2
Merged-chr16-55814437-2	chr16	55813828	55814828	+	615.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159394, exon 10 of 12)	exon (NM_001159394, exon 10 of 12)	7810.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.86	3.23	8.32	6.75	6.53	9.65	7.39	3.98	6.25
Merged-chr11-105311667-2	chr11	105311173	105312173	+	615.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008626, intron 1 of 29)	intron (NM_008626, intron 1 of 29)	19027.0	NM_008626	17534.0	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	8.01	4.61	6.47	12.82	5.6	8.04	4.22	2.65	1.25
Merged-chr12-85078085-1	chr12	85077585	85078585	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17530.0	NM_001361239	73422.0	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	3.43	6.45	2.77	4.72	1.87	5.63	7.39	0.88	3.75
Merged-chr15-84891850-1	chr15	84891350	84892350	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-31578.0	NM_016714	18141.0	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	3.43	2.76	1.85	0.0	1.4	3.22	0.0	0.0	7.49
Merged-chr15-55114140-3	chr15	55113660	55114660	+	615.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045093)	promoter-TSS (NR_045093)	-578.0	NR_045093	100503794.0	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	-	predicted gene 9920	ncRNA	64.64	69.12	31.45	43.86	20.53	32.96	25.35	24.32	18.74
Merged-chr10-22163891-3	chr10	22163378	22164378	+	615.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	IAPEY4_LTR|LTR|ERVK	5269.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	1.72	0.46	1.85	2.7	1.4	1.61	1.06	0.0	2.5
Merged-chr17-8749600-1	chr17	8749100	8750100	+	615.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290707, intron 1 of 22)	intron (NM_001290707, intron 1 of 22)	-52145.0	NM_011866	23984.0	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.0	3.69	6.47	1.35	2.33	0.0	1.06	0.88	2.5
Merged-chr8-110462980-1	chr8	110462480	110463480	+	615.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 24 of 86)	intron (NM_172916, intron 24 of 86)	39376.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.57	0.92	5.55	1.35	2.8	0.8	4.22	4.86	9.99
Merged-chr7-141403514-2	chr7	141403011	141404011	+	615.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011528)	TTS (NM_011528)	10614.0	NM_172116	213350.0	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	2.86	2.3	3.7	3.37	0.47	3.22	1.06	3.1	5.0
Merged-chr5-24387988-2	chr5	24387492	24388492	+	615.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001002897, exon 6 of 14)	exon (NM_001002897, exon 6 of 14)	4151.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	5.72	3.23	6.47	5.4	2.33	3.22	1.06	1.33	0.62
Merged-chr7-120981701-2	chr7	120981170	120982170	+	615.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028955)	promoter-TSS (NM_028955)	642.0	NM_007672	12585.0	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	17.16	5.53	0.92	26.99	11.66	20.09	10.56	7.52	5.62
Merged-chr19-47932458-3	chr19	47931947	47932947	+	615.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5265.0	NM_001163267	381229.0	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	1.72	4.15	5.55	4.72	3.27	8.04	3.17	1.77	3.75
Merged-chr17-64735731-1	chr17	64735231	64736231	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008549, intron 19 of 21)	intron (NM_008549, intron 19 of 21)	-31380.0	NR_105051	101202683.0	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	6.86	4.61	3.7	4.72	7.0	4.82	3.17	4.86	9.37
Merged-chr10-93494262-1	chr10	93493762	93494762	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010401, intron 8 of 19)	CT-rich|Low_complexity|Low_complexity	5494.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.0	3.69	1.85	6.07	0.93	1.61	1.06	0.88	2.5
Merged-chr13-112259601-1	chr13	112259101	112260101	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28850.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	5.15	3.23	3.7	7.42	0.93	1.61	3.17	3.1	1.25
Merged-chr15-103388708-2	chr15	103388199	103389199	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21908.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	6.86	2.3	7.4	3.37	4.2	0.0	1.06	2.21	0.0
Merged-chr19-59024819-3	chr19	59024330	59025330	+	615.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114312, intron 8 of 16)	intron (NM_001114312, intron 8 of 16)	51239.0	NM_175172	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	48.05	32.72	28.67	21.59	26.59	17.68	30.63	68.54	14.99
Merged-chr10-24163428-2	chr10	24162930	24163930	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	14113.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	33.75	62.67	52.72	33.06	28.46	39.39	47.53	34.93	23.11
Merged-chr13-44952618-2	chr13	44952188	44953188	+	615.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025772, intron 7 of 9)	intron (NM_025772, intron 7 of 9)	49408.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	16.59	17.97	21.27	18.89	13.53	8.84	22.18	17.69	7.49
Merged-chr11-115513320-1	chr11	115512820	115513820	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008258, intron 1 of 4)	intron (NM_008258, intron 1 of 4)	1073.0	NM_008258	15374.0	Mm.1775	NM_008258	ENSMUSG00000020737	Jpt1	Hn1	Jupiter microtubule associated homolog 1	protein-coding	109.26	85.25	63.82	89.06	53.18	89.22	122.52	113.19	74.94
Merged-chr13-48260945-1	chr13	48260445	48261445	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031166)	promoter-TSS (NM_031166)	-482.0	NM_031166	15904.0	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	1.72	0.46	9.25	3.37	0.47	0.0	1.06	0.88	2.5
Merged-chr11-76541163-1	chr11	76540663	76541663	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198894, intron 1 of 22)	intron (NM_198894, intron 1 of 22)	30221.0	NM_198895	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	6.86	2.76	0.0	5.4	4.2	8.04	2.11	0.88	1.25
Merged-chr4-47262775-2	chr4	47262260	47263260	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 10 of 39)	intron (NM_009928, intron 10 of 39)	54748.0	NM_009928	12819.0	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	18.31	7.83	9.25	20.24	7.93	11.25	12.67	7.07	7.49
Merged-chr7-129756402-1	chr7	129755902	129756902	+	615.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	164539.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	8.01	17.97	14.8	7.42	13.53	29.74	11.62	5.75	20.61
Merged-chr1-36447101-1	chr1	36446601	36447601	+	615.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1830.0	NM_001310517	214895.0	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	41.19	66.81	40.7	46.56	45.72	65.11	64.43	61.9	47.46
Merged-chr15-87116924-1	chr15	87116424	87117424	+	615.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-427375.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	2.86	4.61	5.55	6.07	3.73	13.66	7.39	7.96	9.99
Merged-chr6-40580491-1	chr6	40579991	40580991	+	615.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038604, intron 5 of 6)	B4A|SINE|B4	5314.0	NM_021364	23845.0	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	4.58	5.53	0.0	6.75	5.6	0.0	5.28	0.44	2.5
Merged-chr6-89449469-1	chr6	89448969	89449969	+	615.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001167736, intron 4 of 6)	MTB_Mm|LTR|ERVL-MaLR	-86856.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	17.16	15.21	20.35	9.45	9.8	8.04	12.67	6.63	9.37
Merged-chr17-44438650-1	chr17	44438150	44439150	+	615.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	250078.0	NM_172621	224796.0	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg|nmf318	chloride intracellular channel 5	protein-coding	1.14	3.23	3.7	2.02	2.8	8.04	4.22	4.42	9.37
Merged-chr7-80905136-2	chr7	80904669	80905669	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-107.0	NM_001291280	68039.0	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	4.58	9.68	27.75	10.12	4.67	14.47	4.22	11.05	19.36
Merged-chr7-45309648-1	chr7	45309148	45310148	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175130, intron 17 of 24)	intron (NM_175130, intron 17 of 24)	-15310.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	4.0	5.07	1.85	2.7	0.93	2.41	1.06	3.54	5.0
Merged-chr4-9072202-2	chr4	9071719	9072719	+	615.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-197074.0	NM_001355183	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	9.72	4.15	5.55	3.37	2.33	3.22	8.45	6.63	3.75
Merged-chr5-142912916-3	chr5	142912447	142913447	+	615.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6193.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	5.15	9.22	10.17	12.82	7.0	11.25	11.62	13.27	8.74
Merged-chr14-34616966-3	chr14	34616410	34617410	+	615.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16768.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	1.14	2.76	1.85	2.02	1.87	1.61	1.06	1.33	6.25
Merged-chr1-125447853-2	chr1	125447362	125448362	+	615.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12135.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	5.15	13.36	9.25	4.72	4.2	12.06	12.67	15.03	13.74
Merged-chr7-99090049-2	chr7	99089560	99090560	+	615.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	intron (NM_178635, intron 4 of 14)	51084.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	51.48	58.98	41.62	65.45	33.12	52.25	51.75	55.71	37.47
Merged-chr2-46371930-2	chr2	46371428	46372428	+	615.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3c|LINE|L1	675323.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	44.05	47.0	39.77	51.95	40.59	60.28	92.94	53.06	22.48
Merged-chr3-41082085-2	chr3	41081586	41082586	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027558, intron 1 of 2)	intron (NM_027558, intron 1 of 2)	960.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	10.87	10.14	23.12	27.66	16.33	20.9	25.35	8.84	19.98
Merged-chr5-65880728-1	chr5	65880228	65881228	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17159.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	36.04	31.33	37.0	31.71	13.06	28.13	30.63	18.57	20.61
Merged-chr11-117092869-1	chr11	117092369	117093369	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15521.0	NR_105853	102465258.0		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	18.31	9.68	1.85	31.71	15.86	22.51	19.01	14.59	5.62
Merged-chr4-41407599-1	chr4	41407099	41408099	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024241, intron 6 of 12)	ORR1E|LTR|ERVL-MaLR	55636.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	16.59	23.96	12.02	15.52	10.26	32.15	15.84	7.07	22.48
Merged-chr19-9930462-2	chr19	9929969	9930969	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-30936.0	NM_016692	16319.0	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	119.56	113.81	94.35	155.19	182.4	108.51	118.29	163.16	64.33
Merged-chr1-57969446-1	chr1	57968946	57969946	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_027630)	promoter-TSS (NR_027630)	78.0	NR_027630	51960.0	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	34.32	50.23	31.45	59.38	57.85	45.82	40.14	35.82	16.24
Merged-chr3-61244238-1	chr3	61243738	61244738	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120269.0	NM_028712	74012.0	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	2.86	3.23	0.0	8.77	5.13	0.8	1.06	11.05	3.75
Merged-chr16-55480445-1	chr16	55479945	55480945	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14286.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	2.86	1.38	0.0	5.4	2.33	5.63	1.06	1.77	1.25
Merged-chr7-74981160-1	chr7	74980660	74981660	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-49051.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	9.72	7.37	14.8	8.77	4.2	1.61	4.22	3.54	5.62
Merged-chr14-99044943-2	chr14	99044461	99045461	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175245, intron 1 of 2)	PB1D10|SINE|Alu	1175.0	NM_175245	76789.0	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	12.59	16.59	10.17	17.54	12.13	16.08	22.18	31.84	14.36
Merged-chr7-96151515-1	chr7	96151015	96152015	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19729.0	NM_001310762	23966.0	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.86	3.23	5.55	1.35	1.4	0.0	0.0	0.44	1.87
Merged-chr4-107738041-2	chr4	107737504	107738504	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53842.0	NM_019872	56296.0	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	2.29	1.84	0.0	4.05	1.87	1.61	1.06	0.0	5.0
Merged-chr4-48048883-1	chr4	48048383	48049383	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	-2363.0	NM_001307989	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	5.15	1.38	0.0	1.35	3.73	6.43	3.17	2.65	5.0
Merged-chr4_GL456216_random-34502-1	chr4_GL456216_random	34002	35002	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033326, intron 5 of 6)	CpG-10796	18621.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	27.46	16.8	0.0
Merged-chr3-149460891-1	chr3	149460391	149461391	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	186154.0	NR_040591	381482.0	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	5.72	4.15	3.7	5.4	6.53	7.23	7.39	3.1	1.87
Merged-chr5-105293028-1	chr5	105292528	105293528	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	671.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	114.41	111.05	102.67	55.33	72.31	70.73	179.55	148.13	69.32
Merged-chr9-31042028-2	chr9	31041510	31042510	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001115130, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	11366.0	NM_172765	235132.0	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	11.44	7.83	12.02	8.77	6.06	11.25	10.56	10.17	6.25
Merged-chr9-50587287-1	chr9	50586787	50587787	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16562.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	6.29	7.37	11.1	6.07	2.8	4.82	5.28	1.77	10.62
Merged-chr15-36684307-2	chr15	36683814	36684814	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-75341.0	NM_008774	18458.0	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	18.31	11.98	11.1	10.12	6.06	11.25	17.96	15.03	11.87
Merged-chr18-77063576-1	chr18	77063076	77064076	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-1632.0	NM_008602	17344.0	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	8.58	4.15	0.92	3.37	4.2	10.45	8.45	3.54	7.49
Merged-chr3-121636990-1	chr3	121636490	121637490	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_036457)	TTS (NR_036457)	6495.0	NR_036456	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	2.86	4.61	9.25	8.1	2.8	0.0	4.22	3.1	0.0
Merged-chr1-171613617-1	chr1	171613117	171614117	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6207.0	NM_001277968	17085.0	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	7.44	5.53	0.0	8.77	9.33	14.47	3.17	2.21	0.0
Merged-chr10-130093015-1	chr10	130092515	130093515	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18603.0	NM_146671	258666.0	Mm.377628	NM_146671	ENSMUSG00000058251	Olfr822	MOR113-2	olfactory receptor 822	protein-coding	0.0	1.84	0.0	2.7	1.87	4.82	2.11	1.33	0.0
Merged-chr8-106416862-1	chr8	106416362	106417362	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011764, intron 1 of 3)	intron (NM_011764, intron 1 of 3)	1523.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	33.75	46.54	27.75	41.16	34.06	42.6	40.14	61.9	36.22
Merged-chr12-4080513-1	chr12	4080013	4081013	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2061.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	2.29	5.07	0.92	1.35	3.73	1.61	6.34	3.1	1.87
Merged-chr7-102384170-1	chr7	102383670	102384670	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 2 of 11)	ID_B1|SINE|B4	-57525.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	7.44	7.83	11.1	12.82	8.4	11.25	5.28	9.29	8.74
Merged-chr2-160356952-1	chr2	160356452	160357452	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10113.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	5.15	2.3	7.4	8.77	2.8	14.47	2.11	1.77	8.74
Merged-chr5-64743220-1	chr5	64742720	64743720	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-60303.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.58	3.23	3.7	6.75	1.87	6.43	7.39	5.75	3.12
Merged-chr5-120605081-1	chr5	120604581	120605581	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029408, intron 3 of 4)	intron (NM_029408, intron 3 of 4)	7508.0	NM_029096	100764.0	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	17.16	10.14	17.57	15.52	10.73	21.7	22.18	7.96	10.62
Merged-chr15-74926031-1	chr15	74925531	74926531	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29020.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	117.84	72.34	94.35	50.6	32.66	33.76	128.85	217.99	51.84
Merged-chrX-99130287-1	chrX	99129787	99130787	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5774.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	1.14	3.23	1.85	1.35	0.0	1.61	0.0	1.33	0.62
Merged-chr2-29820329-2	chr2	29819849	29820849	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7040.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	16.02	13.36	22.2	17.54	14.0	20.9	25.35	27.86	26.85
Merged-chr3-145905775-1	chr3	145905275	145906275	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18487.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.57	2.3	6.47	4.05	0.0	0.0	4.22	1.77	7.49
Merged-chr18-46412142-1	chr18	46411642	46412642	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	53674.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	6.29	3.23	11.1	6.07	6.53	10.45	2.11	6.63	6.25
Merged-chr19-12830224-1	chr19	12829724	12830724	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134152, intron 7 of 8)	intron (NM_134152, intron 7 of 8)	-31553.0	NM_146702	258697.0	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	7.44	7.83	24.05	11.47	8.4	4.82	2.11	8.84	5.62
Merged-chr7-45336586-1	chr7	45336086	45337086	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010473, exon 1 of 6)	exon (NM_010473, exon 1 of 6)	1317.0	NM_010473	15464.0	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	8.58	4.61	1.85	4.72	5.6	8.84	2.11	2.21	3.12
Merged-chr18-4355518-2	chr18	4355018	4356018	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040328, intron 2 of 3)	intron (NR_040328, intron 2 of 3)	1971.0	NR_040328	73915.0	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	124.71	155.75	134.12	131.57	124.09	158.35	132.02	169.35	131.78
Merged-chr2-133442733-2	chr2	133442234	133443234	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-109425.0	NM_007553	12156.0	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	3.43	5.07	4.62	5.4	7.46	8.04	5.28	2.21	5.0
Merged-chr18-54612059-1	chr18	54611559	54612559	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045400, intron 1 of 2)	intron (NR_045400, intron 1 of 2)	315.0	NR_045400	328957.0	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	3.43	4.15	1.85	6.07	7.93	7.23	1.06	3.1	3.12
Merged-chr8-88263097-2	chr8	88262596	88263596	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9307.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	8.01	9.22	1.85	9.45	7.0	2.41	6.34	3.54	13.12
Merged-chr12-83949209-1	chr12	83948709	83949709	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1399.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	16.02	9.22	11.1	14.84	10.73	21.7	17.96	5.31	15.61
Merged-chr9-7714297-1	chr9	7713797	7714797	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18666.0	NR_126562	102722.0	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	6.29	5.53	0.92	5.4	2.8	6.43	3.17	0.88	5.0
Merged-chr6-100335554-1	chr6	100335054	100336054	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48196.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.29	2.76	9.25	7.42	5.6	1.61	6.34	2.65	8.12
Merged-chr14-70303090-1	chr14	70302590	70303590	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001135152)	TTS (NM_001135152)	-13593.0	NM_001304992	19057.0	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	1.72	2.3	0.0	3.37	3.73	3.22	3.17	3.1	1.25
Merged-chr8-126515405-1	chr8	126514905	126515905	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40340.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	1.14	5.99	0.0	4.72	2.33	4.82	11.62	7.07	1.25
Merged-chr17-15829682-1	chr17	15829182	15830182	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3096.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.72	6.91	12.02	7.42	1.87	8.04	11.62	3.98	8.12
Merged-chr15-76765945-2	chr15	76765441	76766441	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	-42096.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	8.58	4.61	1.85	13.49	7.93	15.27	7.39	2.21	5.62
Merged-chr6-143150786-1	chr6	143150286	143151286	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153819, intron 2 of 8)	intron (NR_153819, intron 2 of 8)	3145.0	NR_153819	102633311.0	Mm.333484	NR_153819		Gm31108	Gm31169	predicted gene, 31108	ncRNA	13.16	10.14	5.55	9.45	14.0	4.82	15.84	8.4	9.99
Merged-chr8-41243288-1	chr8	41242788	41243788	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 1 of 37)	intron (NM_023662, intron 1 of 37)	3529.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	1.72	7.37	4.62	4.72	3.73	3.22	13.73	7.52	1.25
Merged-chr11-83739394-1	chr11	83738894	83739894	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7546.0	NM_183249	66107.0	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	17.16	10.6	7.4	13.49	10.73	1.61	15.84	15.03	3.75
Merged-chr12-40140948-1	chr12	40140448	40141448	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6720.0	NM_001146196	20259.0	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	2.29	2.76	1.85	2.02	2.33	3.22	3.17	4.86	2.5
Merged-chr2-18607290-1	chr2	18606790	18607790	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65172.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	4.58	4.61	0.0	6.07	1.87	0.0	2.11	4.42	1.87
Merged-chr15-76233107-2	chr15	76232643	76233643	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001163575, exon 11 of 11)	3' UTR (NM_001163575, exon 11 of 11)	-1765.0	NM_011117	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	11.44	2.3	9.25	4.05	4.67	4.82	8.45	4.42	3.12
Merged-chr5-43921727-1	chr5	43921227	43922227	+	615.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	52918.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	1.72	4.61	9.25	4.05	2.8	6.43	4.22	4.86	3.75
Merged-chr7-139126052-1	chr7	139125552	139126552	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021302, intron 2 of 11)	intron (NM_021302, intron 2 of 11)	40051.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	6.29	1.38	1.85	6.07	0.93	2.41	1.06	0.0	1.25
Merged-chr6-24109336-1	chr6	24108836	24109836	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019481, intron 7 of 14)	intron (NM_019481, intron 7 of 14)	58756.0	NM_019481	55961.0	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	4.58	5.99	0.0	3.37	8.86	1.61	7.39	4.42	0.0
Merged-chr4-70398297-2	chr4	70397796	70398796	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145990, intron 3 of 36)	RLTR16B_MM|LTR|ERVK	12139.0	NM_001313762	214444.0	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	1.72	5.07	1.85	4.05	1.4	3.22	5.28	1.77	1.25
Merged-chr1-153498318-1	chr1	153497818	153498818	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10658.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	33.18	29.03	43.47	22.27	13.06	28.13	40.14	48.64	15.61
Merged-chr5-99210768-1	chr5	99210268	99211268	+	615.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	42159.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	9.15	3.69	0.92	4.72	1.87	4.82	4.22	2.21	8.12
Merged-chr10-25427666-1	chr10	25427166	25428166	+	615.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013511, intron 1 of 19)	intron (NM_013511, intron 1 of 19)	19298.0	NM_013511	13822.0	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	11.44	7.37	8.32	13.49	7.93	7.23	3.17	2.21	6.25
Merged-chr10-9575800-2	chr10	9575303	9576303	+	614.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99405.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	2.29	2.3	0.0	6.07	0.93	1.61	1.06	3.54	3.75
Merged-chr4-59804953-2	chr4	59804459	59805459	+	614.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172468)	promoter-TSS (NM_172468)	-691.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	68.07	82.94	55.5	48.58	55.05	52.25	99.28	97.28	54.33
Merged-chr12-100188226-2	chr12	100187728	100188728	+	614.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045282, exon 1 of 3)	non-coding (NR_045282, exon 1 of 3)	260.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	147.02	119.8	101.74	149.11	123.62	115.75	142.59	189.25	76.82
Merged-chr8-123235679-2	chr8	123235201	123236201	+	614.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001357300, exon 1 of 2)	exon (NM_001357300, exon 1 of 2)	557.0	NM_001357301	78779.0	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233	spermatogenesis associated 2-like	protein-coding	41.19	33.64	15.72	39.13	27.99	23.31	27.46	26.09	13.74
Merged-chr5-137757422-3	chr5	137756926	137757926	+	614.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023910, intron 3 of 4)	intron (NM_023910, intron 3 of 4)	11457.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	6.86	8.75	14.8	9.45	4.2	12.06	6.34	7.52	2.5
Merged-chr9-20644053-2	chr9	20643559	20644559	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310746)	promoter-TSS (NM_001310746)	708.0	NM_001002846	30843.0	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	215.66	350.2	216.44	168.68	164.68	164.78	202.79	313.05	183.61
Merged-chr9-32445927-2	chr9	32445433	32446433	+	614.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008026, intron 5 of 8)	intron (NM_008026, intron 5 of 8)	51948.0	NM_001168354	56379.0	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	9.15	7.83	11.1	11.47	4.2	3.22	8.45	11.5	11.24
Merged-chr16-48812270-2	chr16	48811796	48812796	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4560.0	NM_023881	57263.0	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	16.02	13.36	10.17	18.89	14.0	8.04	15.84	10.61	6.25
Merged-chr6-52158891-2	chr6	52158383	52159383	+	614.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001311118)	promoter-TSS (NM_001311118)	359.0	NR_131181	105242658.0	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	135.0	117.04	83.25	58.7	46.65	54.66	155.26	103.47	83.06
Merged-chr15-98664417-1	chr15	98663917	98664917	+	614.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1528.0	NM_001080981	74351.0	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	5.15	1.38	9.25	5.4	0.93	2.41	4.22	5.75	1.87
Merged-chr6-97488658-1	chr6	97488158	97489158	+	614.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001346637)	promoter-TSS (NM_001346637)	-838.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	161.32	153.9	127.64	153.16	130.16	138.25	182.72	218.43	125.53
Merged-chr3-84615278-2	chr3	84614772	84615772	+	614.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	21698.0	NM_207278	403175.0	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	2.29	2.76	4.62	6.07	1.4	1.61	3.17	5.31	1.87
Merged-chr11-117166618-2	chr11	117166113	117167113	+	614.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33048.0	NM_001113486	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	12.01	7.83	3.7	22.27	9.8	4.82	6.34	4.86	7.49
Merged-chr11-83562482-2	chr11	83561976	83562976	+	614.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16160.0	NM_011338	20308.0	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	14.87	12.9	7.4	12.82	7.46	14.47	11.62	15.03	5.62
Merged-chr7-19507567-3	chr7	19507049	19508049	+	614.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	782.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	92.67	125.33	76.77	78.27	91.9	87.61	98.23	130.88	69.95
Merged-chr2-27565524-2	chr2	27565021	27566021	+	614.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50374.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	21.17	13.36	16.65	23.62	13.06	14.47	9.51	7.96	8.74
Merged-chr4-152224387-1	chr4	152223887	152224887	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133348, intron 4 of 8)	intron (NM_133348, intron 4 of 8)	24543.0	NM_001146058	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	2.29	0.0	1.85	2.7	2.8	1.61	3.17	1.77	8.74
Merged-chr11-107334689-1	chr11	107334189	107335189	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359616, intron 2 of 8)	intron (NM_001359616, intron 2 of 8)	136031.0	NR_153311	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	101.25	102.29	74.92	168.68	146.48	106.1	103.51	137.07	66.82
Merged-chr16-55661814-1	chr16	55661314	55662314	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	160324.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	9.72	5.07	1.85	11.47	2.8	6.43	11.62	5.31	6.87
Merged-chr10-127557572-1	chr10	127557072	127558072	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 48 of 88)	intron (NM_008512, intron 48 of 88)	-23013.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	10.3	2.76	11.1	8.1	0.47	9.65	5.28	4.86	5.0
Merged-chr13-119461941-1	chr13	119461441	119462441	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113550)	promoter-TSS (NM_001113550)	-818.0	NR_153825	67392.0	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	40.04	48.38	35.15	31.04	43.85	43.4	48.58	46.87	48.09
Merged-chr1-88241740-1	chr1	88241240	88242240	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 19 of 41)	intron (NM_001281466, intron 19 of 41)	14720.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	5.15	7.83	2.77	9.45	14.0	6.43	6.34	9.29	19.36
Merged-chr18-6488376-2	chr18	6487876	6488876	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001276350)	TTS (NM_001276350)	2270.0	NR_035446	100316773.0		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	10.3	17.97	4.62	13.49	16.33	5.63	15.84	13.27	8.12
Merged-chr19-20362363-1	chr19	20361863	20362863	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28308.0	NM_010730	16952.0	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	2.29	1.84	0.0	3.37	0.93	0.0	1.06	0.44	3.12
Merged-chr11-114998236-1	chr11	114997736	114998736	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134158, exon 3 of 4)	exon (NM_134158, exon 3 of 4)	3644.0	NM_134158	140497.0	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	6.29	7.83	17.57	18.22	19.13	32.15	40.14	30.95	30.6
Merged-chr10-42636990-3	chr10	42636496	42637496	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41920.0	NM_172416	14628.0	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	3.43	6.45	3.7	4.72	2.33	1.61	1.06	1.33	1.25
Merged-chr2-70702543-1	chr2	70702043	70703043	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41034.0	NM_027352	70231.0	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	5.15	1.84	1.85	6.07	1.87	4.82	2.11	1.33	3.12
Merged-chr17-67348010-3	chr17	67347495	67348495	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	intron (NM_001357625, intron 1 of 32)	6464.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	323.78	284.3	191.47	319.14	290.63	237.12	224.97	333.84	176.74
Merged-chr7-131800727-1	chr7	131800227	131801227	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-165733.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	6.29	11.52	3.7	5.4	3.73	12.06	8.45	2.21	10.62
Merged-chr1-136637210-1	chr1	136636710	136637710	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	12309.0	NM_001160251	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	110.41	139.62	111.92	84.34	85.84	62.7	99.28	145.92	53.08
Merged-chr4-109203375-2	chr4	109202877	109203877	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1105.0	NM_001346502	100273.0	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	8.58	11.52	13.87	12.14	13.06	16.88	9.51	15.03	13.12
Merged-chr17-5753234-3	chr17	5752726	5753726	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146073, exon 9 of 9)	3' UTR (NM_146073, exon 9 of 9)	-45431.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	9.72	4.15	1.85	10.12	2.33	3.22	2.11	0.88	3.75
Merged-chr16-17583277-2	chr16	17582739	17583739	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6349.0	NM_001359891	224022.0	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	1.72	3.23	0.0	1.35	3.27	1.61	1.06	0.88	1.87
Merged-chr4-62369305-1	chr4	62368805	62369805	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175090, intron 1 of 4)	intron (NM_175090, intron 1 of 4)	8604.0	NM_175090	20529.0	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	5.72	10.14	12.95	4.72	2.8	11.25	11.62	5.31	8.74
Merged-chrX-12841064-1	chrX	12840564	12841564	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	78786.0	NR_045852	552913.0	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	-	predicted gene 14634	ncRNA	20.59	13.36	18.5	19.57	8.86	17.68	20.07	8.84	13.12
Merged-chr2-154187750-1	chr2	154187250	154188250	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3068.0	NM_001012392	228801.0	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	4.58	6.45	2.77	3.37	3.73	2.41	2.11	1.33	1.25
Merged-chr5-5755245-2	chr5	5754744	5755744	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5927.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.86	3.69	5.55	1.35	1.87	0.0	4.22	4.86	1.25
Merged-chr3-31098033-1	chr3	31097533	31098533	+	614.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011386, exon 2 of 7)	exon (NM_011386, exon 2 of 7)	2975.0	NM_001271772	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	69.79	74.19	77.7	74.22	56.45	70.73	124.63	165.37	83.06
Merged-chr17-88252103-1	chr17	88251603	88252603	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	126591.0	NM_001190356	225058.0	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	2.86	4.61	2.77	2.02	0.47	3.22	3.17	5.75	7.49
Merged-chr10-43954129-1	chr10	43953629	43954629	+	614.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172393, intron 19 of 19)	intron (NM_172393, intron 19 of 19)	50717.0	NM_172393	11630.0	Mm.292082	NM_172393	ENSMUSG00000019866	Crybg1	AI462491|AI463325|Aim1	crystallin beta-gamma domain containing 1	protein-coding	5.72	4.61	14.8	4.05	2.8	7.23	3.17	1.77	0.0
Merged-chr2-118746124-3	chr2	118745606	118746606	+	614.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001301269, exon 1 of 1)	5' UTR (NM_001301269, exon 1 of 1)	348.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	37.18	15.21	14.8	30.36	16.79	28.94	17.96	7.96	15.61
Merged-chr4-155179226-3	chr4	155178726	155179726	+	614.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	43309.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	43.48	32.72	23.12	83.66	38.25	25.72	44.36	26.09	38.72
Merged-chr10-67290189-2	chr10	67289691	67290691	+	614.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-4910.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	74.94	51.15	62.9	89.74	38.72	57.87	73.93	90.64	61.83
Merged-chr9-50499103-3	chr9	50498595	50499595	+	614.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_029639, exon 2 of 4)	exon (NM_029639, exon 2 of 4)	4570.0	NM_029639	76509.0	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	10.87	6.45	3.7	6.07	2.8	3.22	6.34	4.42	5.62
Merged-chr4-120501886-1	chr4	120501386	120502386	+	614.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355424, intron 7 of 14)	intron (NM_001355424, intron 7 of 14)	-30345.0	NM_177570	194219.0	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	5.15	1.84	8.32	2.7	0.47	1.61	0.0	2.21	0.62
Merged-chr14-52100561-3	chr14	52099957	52100957	+	614.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360183, intron 1 of 8)	intron (NM_001360183, intron 1 of 8)	3564.0	NM_001360178	15381.0	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	42.33	64.05	32.37	47.9	32.66	39.39	49.64	53.94	36.85
Merged-chr18-61121487-1	chr18	61120987	61121987	+	614.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 11 of 21)	intron (NM_001037859, intron 11 of 21)	4019.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	53.77	50.69	65.67	49.93	29.86	69.93	48.58	52.18	51.21
Merged-chr4-124675263-3	chr4	124674844	124675844	+	614.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	17698.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	6.29	3.23	3.7	0.67	2.8	0.0	2.11	1.77	1.25
Merged-chr18-74823718-2	chr18	74823216	74824216	+	614.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44504.0	NM_177470	52538.0	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	6.86	3.23	7.4	2.02	1.4	1.61	3.17	2.21	2.5
Merged-chr1-165655263-2	chr1	165654826	165655826	+	614.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_178593, exon 6 of 7)	exon (NM_178593, exon 6 of 7)	-20785.0	NM_001083897	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	4.58	5.99	9.25	2.02	3.27	24.11	10.56	3.54	6.25
Merged-chr4-148657857-3	chr4	148657357	148658357	+	614.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	14540.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	8.58	6.45	10.17	12.14	5.6	8.04	29.57	24.76	20.61
Merged-chr5-141005624-1	chr5	141005124	141006124	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5028.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	40.04	16.59	13.87	22.27	16.79	12.06	28.52	19.46	15.61
Merged-chr2-145786163-1	chr2	145785663	145786663	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028724)	promoter-TSS (NM_028724)	47.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	7.44	5.53	3.7	5.4	10.73	9.65	8.45	5.75	3.12
Merged-chr10-130229816-1	chr10	130229316	130230316	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-18688.0	NM_146300	258297.0	Mm.377419	NM_146300	ENSMUSG00000045559	Olfr827	MOR210-5	olfactory receptor 827	protein-coding	2.29	4.15	1.85	3.37	2.33	6.43	3.17	2.65	7.49
Merged-chr2-128466803-1	chr2	128466303	128467303	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37452.0	NR_028590	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	5.15	5.53	1.85	2.7	3.27	0.0	5.28	8.4	16.24
Merged-chr9-63133290-1	chr9	63132790	63133790	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	U6|snRNA|snRNA	13690.0	NM_172446	207667.0	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	138.44	151.6	80.47	186.9	162.34	72.34	132.02	148.57	48.71
Merged-chr15-100102330-3	chr15	100101823	100102823	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	-52073.0	NM_172819	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	22.31	14.28	11.1	17.54	9.33	9.65	20.07	14.15	11.24
Merged-chr3-62497279-1	chr3	62496779	62497779	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028136, intron 4 of 24)	MER2|DNA|TcMar-Tigger	9709.0	NM_028136	72162.0	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	4.0	6.45	3.7	4.72	4.2	6.43	6.34	7.96	9.37
Merged-chr7-136294603-1	chr7	136294103	136295103	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_102277, intron 3 of 3)	intron (NR_102277, intron 3 of 3)	26279.0	NR_102277	77383.0	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	5.15	4.15	0.0	1.35	2.8	0.0	1.06	0.44	4.37
Merged-chr3-52011461-1	chr3	52010961	52011961	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	93545.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	4.0	2.3	1.85	4.72	3.27	0.0	3.17	0.0	3.75
Merged-chr7-80781666-1	chr7	80781166	80782166	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	21665.0	NM_016721	29875.0	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	109.26	105.06	80.47	154.51	141.82	143.07	138.36	126.9	103.67
Merged-chr11-65795003-1	chr11	65794503	65795503	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB8|LINE|L1	-6644.0	NM_001316367	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	13.16	17.97	12.02	20.92	20.99	16.88	19.01	19.46	22.48
Merged-chr17-10771440-1	chr17	10770940	10771940	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	68751.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.86	6.45	1.85	6.07	7.0	1.61	4.22	10.17	1.25
Merged-chr10-100148296-1	chr10	100147796	100148796	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132475.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	11.44	8.75	5.55	7.42	12.6	13.66	17.96	10.17	6.25
Merged-chr1-82832708-1	chr1	82832208	82833208	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6752.0	NM_010472	15463.0	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	8.01	5.07	7.4	4.72	7.93	1.61	10.56	1.33	1.87
Merged-chr3-79673210-1	chr3	79672710	79673710	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_212452, intron 5 of 17)	(CAAA)n|Simple_repeat|Simple_repeat	44131.0	NM_029482	75939.0	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	2.86	1.38	1.85	1.35	1.4	0.0	2.11	0.44	6.87
Merged-chr2-24346423-1	chr2	24345923	24346923	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039701, intron 1 of 3)	intron (NM_001039701, intron 1 of 3)	1052.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	28.03	40.09	32.37	35.09	20.53	14.47	43.3	37.14	29.98
Merged-chr9-64013716-1	chr9	64013216	64014216	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	8343.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	8.58	8.29	11.1	12.14	10.26	12.06	6.34	13.27	6.25
Merged-chr7-39448945-1	chr7	39448445	39449445	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243021)	promoter-TSS (NM_001243021)	-573.0	NM_001243021	233147.0	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	12.01	16.13	5.55	9.45	15.39	12.06	23.24	20.34	18.74
Merged-chr14-106193327-2	chr14	106192819	106193819	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	87121.0	NR_073203	212085.0	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	19.45	12.9	16.65	16.87	8.4	12.86	11.62	4.42	9.99
Merged-chr2-145744324-1	chr2	145743824	145744824	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033220, intron 3 of 3)	intron (NR_033220, intron 3 of 3)	-41792.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	9.72	5.99	7.4	10.12	10.26	6.43	4.22	5.31	3.75
Merged-chr14-120572474-1	chr14	120571974	120572974	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94013.0	NM_029519	76108.0	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	1.72	1.38	3.7	4.72	1.4	0.0	1.06	3.54	2.5
Merged-chr3-108786745-1	chr3	108786245	108787245	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	47087.0	NM_177859	329738.0	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	4.0	1.84	0.0	3.37	6.53	1.61	5.28	2.21	6.25
Merged-chr19-58087266-1	chr19	58086766	58087766	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	RLTR45|LTR|ERVK	36099.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	6.29	9.22	21.27	10.8	4.67	25.72	6.34	3.98	5.0
Merged-chr4-138001875-1	chr4	138001375	138002375	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	4050.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	9.15	8.75	5.55	8.77	4.67	10.45	14.79	4.86	19.36
Merged-chr10-127479216-2	chr10	127478733	127479733	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359246, intron 13 of 23)	intron (NM_001359246, intron 13 of 23)	-22453.0	NM_001359751	237611.0	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	9.72	13.82	5.55	15.52	5.13	13.66	9.51	4.42	9.99
Merged-chr13-97219659-1	chr13	97219159	97220159	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3A|LINE|L1	-21302.0	NM_010422	15212.0	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	6.29	4.61	5.55	7.42	4.2	6.43	11.62	4.42	3.75
Merged-chrX-146946602-1	chrX	146946102	146947102	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15911.0	NM_008312	15560.0	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	13.16	18.43	11.1	18.89	17.26	23.31	10.56	10.17	14.99
Merged-chr10-88054880-1	chr10	88054380	88055380	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36192.0	NM_029971	110312.0	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	4.58	2.76	3.7	12.14	9.8	7.23	5.28	7.52	5.62
Merged-chr4-106805084-1	chr4	106804584	106805584	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001347159)	promoter-TSS (NM_001347159)	-77.0	NM_001347159	329910.0	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	13.16	7.37	12.95	15.52	2.8	4.02	8.45	8.84	1.25
Merged-chr11-117109345-1	chr11	117108845	117109845	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5827.0	NR_029459	74136.0	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	97.25	80.64	40.7	97.83	67.64	77.97	67.6	71.63	46.22
Merged-chr7-83483208-1	chr7	83482708	83483708	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101723.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	10.87	6.45	1.85	4.72	5.13	8.04	9.51	8.4	5.62
Merged-chr2-59340259-1	chr2	59339759	59340759	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175464, intron 15 of 20)	intron (NM_175464, intron 15 of 20)	46423.0	NR_040510	76676.0	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	21.17	27.65	12.95	43.18	49.92	24.11	17.96	22.99	13.74
Merged-chr10-75838097-1	chr10	75837597	75838597	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3216.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	99.54	77.41	68.45	88.39	61.11	89.22	80.27	58.37	34.97
Merged-chr3-13561130-1	chr3	13560630	13561630	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	L1_Mus2|LINE|L1	88331.0	NM_001357036	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	1.72	0.92	0.0	2.02	4.2	2.41	1.06	3.54	8.12
Merged-chr2-68982984-1	chr2	68982484	68983484	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347161, intron 3 of 10)	Lx8|LINE|L1	121543.0	NM_001347161	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	10.3	11.98	24.05	8.77	12.6	12.86	10.56	6.19	8.74
Merged-chr7-131802195-1	chr7	131801695	131802695	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-164265.0	NM_173410	233919.0	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	9.72	14.28	2.77	12.14	12.6	5.63	16.9	4.86	10.62
Merged-chr7-84212182-1	chr7	84211682	84212682	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-60289.0	NM_133722	70178.0	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	1.14	2.76	12.95	0.67	1.87	3.22	19.01	13.27	12.49
Merged-chr11-6402932-1	chr11	6402432	6403432	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005867, intron 15 of 18)	intron (NM_001005867, intron 15 of 18)	1302.0	NR_106109	102465759.0		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0.0	0.92	3.7	4.72	1.87	3.22	3.17	0.44	5.0
Merged-chr6-38808447-1	chr6	38807947	38808947	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	28864.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	14.87	18.89	24.97	20.92	24.72	35.37	19.01	22.55	25.61
Merged-chr5-123610020-1	chr5	123609520	123610520	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359224, intron 15 of 18)	intron (NM_001359224, intron 15 of 18)	-37005.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	5.15	3.23	1.85	4.72	4.67	7.23	7.39	3.98	1.25
Merged-chr3-60611869-1	chr3	60611369	60612369	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253711, intron 3 of 7)	(A)n|Simple_repeat|Simple_repeat	110690.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	8.01	6.45	9.25	10.8	6.06	10.45	7.39	7.52	9.99
Merged-chr16-78199521-1	chr16	78199021	78200021	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	55933.0	NR_045698	100503619.0	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	25.74	19.35	11.1	24.29	7.46	17.68	33.8	22.55	15.61
Merged-chr12-80110601-1	chr12	80110101	80111101	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007564, intron 1 of 1)	intron (NM_007564, intron 1 of 1)	2412.0	NM_007564	12192.0	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	26.89	14.75	19.42	37.78	10.26	23.31	17.96	16.36	17.49
Merged-chr7-16048881-1	chr7	16048381	16049381	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22964.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	250.56	287.07	180.37	230.75	251.45	193.71	141.53	206.93	108.67
Merged-chr6-50115959-1	chr6	50115459	50116459	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361248, intron 1 of 13)	intron (NM_001361248, intron 1 of 13)	5099.0	NM_001361248	56524.0	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	62.35	85.25	29.6	45.21	55.05	71.54	77.1	76.05	44.97
Merged-chr17-87596697-1	chr17	87596197	87597197	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-39282.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	6.29	5.99	11.1	6.75	4.67	12.86	1.06	0.88	2.5
Merged-chr6-108428584-1	chr6	108428084	108429084	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-61159.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	1.14	5.07	3.7	4.05	3.73	3.22	3.17	3.1	0.0
Merged-chr13-100401996-1	chr13	100401496	100402496	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	50868.0	NM_008670	17940.0	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	7.44	5.07	1.85	8.1	11.2	8.04	8.45	26.53	10.62
Merged-chr11-105944271-1	chr11	105943771	105944771	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_007805, exon 1 of 6)	5' UTR (NM_007805, exon 1 of 6)	216.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	8.58	6.45	0.0	8.1	0.47	5.63	3.17	2.65	6.25
Merged-chr2-19308628-1	chr2	19308128	19309128	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081083, intron 19 of 19)	intron (NM_001081083, intron 19 of 19)	-35689.0	NR_126563	108871.0	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	1.14	0.92	1.85	3.37	1.4	1.61	5.28	0.44	1.25
Merged-chr4-134586302-1	chr4	134585802	134586802	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 4 of 11)	intron (NM_207237, intron 4 of 11)	-18451.0	NR_105829	102465216.0		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	2.86	7.37	1.85	33.06	39.65	20.9	28.52	28.3	8.12
Merged-chr12-44276121-1	chr12	44275621	44276621	+	614.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	L1MA4|LINE|L1	6967.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	8.58	16.59	13.87	8.1	7.93	11.25	30.63	15.03	11.87
Merged-chr9-106411348-1	chr9	106410848	106411848	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18063.0	NM_001324533	19944.0	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	4.58	0.92	1.85	6.75	0.0	3.22	0.0	4.86	1.25
Merged-chrX-140490754-1	chrX	140490254	140491254	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MDa|LINE|L1	34151.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	3.43	3.69	5.55	2.7	0.47	0.8	1.06	3.1	0.0
Merged-chr2-48886226-2	chr2	48885744	48886744	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007396, intron 4 of 10)	intron (NM_007396, intron 4 of 10)	63023.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.57	3.69	1.85	2.02	1.87	0.0	3.17	2.65	2.5
Merged-chr5-101786126-1	chr5	101785626	101786626	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173370, intron 2 of 12)	intron (NM_173370, intron 2 of 12)	20996.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	12.59	6.45	3.7	14.17	6.06	5.63	13.73	2.21	3.12
Merged-chr10-14960072-1	chr10	14959572	14960572	+	614.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	199783.0	NM_008703	18101.0	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	20.02	17.97	9.25	38.46	36.85	32.96	26.4	15.92	11.87
Merged-chr3-116450913-3	chr3	116450410	116451410	+	614.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-26878.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.86	5.99	10.17	6.07	3.27	4.02	4.22	9.73	9.99
Merged-chr10-68301180-3	chr10	68300690	68301690	+	613.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	19952.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	7.44	5.07	0.0	2.7	3.73	4.02	5.28	8.84	0.62
Merged-chr7-136489194-2	chr7	136488695	136489695	+	613.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139780.0	NR_040459	330664.0	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.0	1.84	4.62	0.67	0.93	1.61	2.11	3.98	1.25
Merged-chr17-40877798-2	chr17	40877297	40878297	+	613.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027834, intron 1 of 1)	intron (NM_027834, intron 1 of 1)	2761.0	NM_027834	71583.0	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	26.89	36.4	37.0	8.77	4.67	4.82	23.24	17.24	34.35
Merged-chr7-128320616-2	chr7	128320118	128321118	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22487.0	NM_145590	233913.0	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	30.89	29.49	18.5	41.83	14.93	15.27	33.8	24.32	24.98
Merged-chr18-61746990-1	chr18	61746490	61747490	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178928, intron 8 of 18)	intron (NM_178928, intron 8 of 18)	20600.0	NR_029432	68982.0	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.57	1.38	1.85	1.35	1.4	0.0	1.06	1.77	3.75
Merged-chr3-78948358-2	chr3	78947852	78948852	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	196535.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	1.14	4.61	2.77	6.75	2.33	0.0	3.17	0.88	0.0
Merged-chr11-106819118-1	chr11	106818618	106819618	+	613.75	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025481)	TTS (NM_025481)	29866.0	NM_001166685	320162.0	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	124.71	121.19	56.42	194.32	166.08	82.79	70.76	99.05	29.35
Merged-chr2-22986503-1	chr2	22986003	22987003	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077190, intron 2 of 10)	intron (NM_001077190, intron 2 of 10)	53738.0	NM_001077192	11308.0	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	14.87	17.97	19.42	20.24	25.66	12.86	28.52	24.32	15.61
Merged-chr2-31087219-1	chr2	31086719	31087719	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 4 of 15)	intron (NM_001355105, intron 4 of 15)	9281.0	NM_001177650	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	44.62	41.47	25.9	41.83	38.72	56.27	35.91	27.41	29.35
Merged-chr8-68908630-1	chr8	68908130	68909130	+	613.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28075.0	NM_008509	16956.0	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	24.03	14.28	16.65	27.66	15.86	27.33	33.8	26.53	21.86
Merged-chr19-3850985-2	chr19	3850475	3851475	+	613.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013490)	promoter-TSS (NM_013490)	-798.0	NM_001271496	12660.0	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	77.8	25.34	24.05	58.03	52.72	22.51	54.92	47.75	14.99
Merged-chr11-50364740-3	chr11	50364242	50365242	+	613.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6863.0	NR_030529	100049547.0		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	4.58	5.07	1.85	4.72	1.4	4.82	3.17	0.44	3.75
Merged-chr12-98212621-2	chr12	98212111	98213111	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008079, intron 14 of 16)	L1_Mus3|LINE|L1	46848.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	2.86	3.69	5.55	2.7	0.0	3.22	0.0	0.0	3.75
Merged-chr11-108343165-2	chr11	108342639	108343639	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 1 of 16)	CpG	749.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	13.73	7.83	3.7	10.8	7.46	8.04	13.73	12.82	9.99
Merged-chr6-115491432-2	chr6	115490946	115491946	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-53258.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	13.73	22.58	12.95	12.82	23.33	14.47	26.4	27.86	10.62
Merged-chr18-88847551-1	chr18	88847051	88848051	+	613.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46656.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	7.44	3.69	1.85	2.7	8.4	1.61	4.22	6.63	3.12
Merged-chr19-12572821-1	chr19	12572321	12573321	+	613.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001346545)	promoter-TSS (NM_001346545)	-689.0	NM_001346545	107373.0	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	27.46	25.34	38.85	37.11	24.72	33.76	73.93	74.28	74.32
Merged-chr9-56947651-2	chr9	56947169	56948169	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3255.0	NM_178374	66069.0	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	2.86	4.61	3.7	5.4	1.87	3.22	2.11	1.77	0.0
Merged-chr4-141287176-1	chr4	141286676	141287676	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8737.0	NR_151527	100503810.0		NR_151527	ENSMUSG00000085395	Gm13056	-	predicted gene 13056	ncRNA	2.86	6.45	1.85	11.47	0.47	1.61	4.22	2.65	0.0
Merged-chr8-106575984-2	chr8	106575483	106576483	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-11160.0	NR_045470	68692.0	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	12.59	13.36	8.32	15.52	4.2	17.68	17.96	7.96	20.61
Merged-chr2-166537079-1	chr2	166536579	166537579	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27443.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	4.58	3.69	1.85	8.77	5.13	4.82	4.22	8.4	3.12
Merged-chr17-91390421-1	chr17	91389921	91390921	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-297619.0	NM_020252	18189.0	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	9.15	8.29	5.55	11.47	17.26	20.9	7.39	3.1	3.75
Merged-chr6-58832802-2	chr6	58832316	58833316	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028705)	promoter-TSS (NM_028705)	-884.0	NM_028705	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	16.59	6.45	1.85	15.52	8.86	8.04	5.28	7.96	3.75
Merged-chr2-138258577-2	chr2	138258075	138259075	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	1991.0	NM_001025431	228662.0	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	27.46	32.72	24.05	25.64	20.06	27.33	36.97	34.93	9.99
Merged-chr14-59185993-1	chr14	59185493	59186493	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7244.0	NM_001004158	380907.0	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	11.44	14.28	14.8	13.49	7.93	21.7	20.07	24.76	11.87
Merged-chr13-85207728-1	chr13	85207228	85208228	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023243, intron 6 of 8)	intron (NM_023243, intron 6 of 8)	18343.0	NM_023243	66671.0	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	5.15	5.07	1.85	6.75	4.2	6.43	5.28	3.98	3.12
Merged-chr11-95586389-1	chr11	95585889	95586889	+	613.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_033217, intron 1 of 5)	CpG	1309.0	NM_033217	18053.0	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	6.29	1.38	1.85	2.02	2.33	0.0	0.0	0.44	0.62
Merged-chrX-96122118-2	chrX	96121625	96122625	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	26080.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	32.04	27.65	16.65	20.24	11.2	11.25	23.24	17.24	16.86
Merged-chr6-65453689-1	chr6	65453189	65454189	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175524, intron 4 of 5)	intron (NM_175524, intron 4 of 5)	72395.0	NM_175524	243407.0	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	4.58	1.84	5.55	3.37	6.06	2.41	2.11	1.77	2.5
Merged-chr6-149101556-2	chr6	149101056	149102056	+	613.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_177192, exon 1 of 21)	5' UTR (NM_177192, exon 1 of 21)	124.0	NM_177192	320560.0	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|Gm17524	DENN/MADD domain containing 5B	protein-coding	4.0	0.92	1.85	1.35	3.27	0.0	3.17	1.77	1.25
Merged-chr19-25006888-3	chr19	25006388	25007388	+	613.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	7359.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	15.45	17.51	25.9	12.82	17.73	8.04	21.12	15.03	7.49
Merged-chr19-53399286-1	chr19	53398786	53399786	+	613.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8652.0	NM_172429	76479.0	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	-	survival motor neuron domain containing 1	protein-coding	6.86	5.99	12.02	6.07	8.4	4.82	5.28	2.21	3.12
Merged-chr6-117825593-2	chr6	117825093	117826093	+	613.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER91B|DNA|hAT-Tip100	-15588.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	1.14	1.84	1.85	1.35	0.93	0.0	3.17	0.0	1.87
Merged-chr3-84654267-2	chr3	84653758	84654758	+	613.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11934.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	10.87	5.99	9.25	20.24	11.2	17.68	15.84	19.9	16.86
Merged-chr10-7727230-2	chr10	7726732	7727732	+	613.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011835, intron 1 of 10)	intron (NM_011835, intron 1 of 10)	1232.0	NM_011835	23924.0	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	27.46	30.87	35.15	18.89	9.33	33.76	42.25	34.05	18.11
Merged-chr11-101589570-2	chr11	101589079	101590079	+	613.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359325, intron 6 of 7)	intron (NM_001359325, intron 6 of 7)	7280.0	NM_001359325	217203.0	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	12.59	12.44	7.4	10.8	9.33	13.66	16.9	5.75	8.74
Merged-chr3-119764004-3	chr3	119763502	119764502	+	613.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310711, intron 2 of 13)	intron (NM_001310711, intron 2 of 13)	19386.0	NM_001310711	56195.0	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	10.3	19.81	2.77	14.84	9.33	8.84	17.96	11.5	11.87
Merged-chr4-130087502-1	chr4	130087002	130088002	+	613.200012	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028266, intron 55 of 69)	intron (NM_028266, intron 55 of 69)	-20054.0	NM_026441	67898.0	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	2.29	1.38	0.0	6.07	2.33	1.61	1.06	0.44	1.25
Merged-chr19-46044510-3	chr19	46044021	46045021	+	613.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113408, intron 1 of 10)	intron (NM_001113408, intron 1 of 10)	790.0	NM_001113408	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	52.63	23.04	49.95	61.4	23.79	48.23	65.48	24.32	34.97
Merged-chr14-8092704-3	chr14	8092189	8093189	+	613.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001348727)	TTS (NM_001348727)	-5522.0	NM_145458	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	22.88	30.87	15.72	18.22	20.06	20.09	21.12	15.48	17.49
Merged-chr7-45305480-2	chr7	45304968	45305968	+	613.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175130, exon 21 of 25)	exon (NM_175130, exon 21 of 25)	-19490.0	NR_110499	100040970.0	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	Gm9811	ribosomal protein L14, pseudogene 1	pseudo	1.72	5.99	1.85	4.72	0.93	0.8	2.11	0.0	0.62
Merged-chr15-50997298-2	chr15	50996792	50997792	+	613.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-107251.0	NM_032000	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	2.86	2.76	3.7	1.35	2.33	4.82	1.06	0.88	2.5
Merged-chr10-127318235-2	chr10	127317738	127318738	+	613.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3726.0	NM_001285785	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	10.87	8.75	11.1	9.45	4.2	11.25	5.28	7.52	11.87
Merged-chr1-191733992-3	chr1	191733506	191734506	+	613.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134829, intron 2 of 7)	intron (NM_001134829, intron 2 of 7)	15611.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	20.59	20.27	18.5	14.84	8.86	8.04	7.39	15.48	8.74
Merged-chr2-164834627-3	chr2	164834094	164835094	+	613.06665	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001082974)	promoter-TSS (NM_001082974)	821.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	116.7	127.18	98.97	201.74	182.87	218.63	212.29	245.4	85.56
Merged-chr10-18049730-1	chr10	18049230	18050230	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-6210.0	NM_009048	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	9.72	7.83	20.35	8.1	4.2	9.65	3.17	3.1	8.74
Merged-chr10-4405122-2	chr10	4404625	4405625	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358796, intron 12 of 13)	intron (NM_001358796, intron 12 of 13)	-17017.0	NM_001033466	381990.0	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	5.72	2.3	1.85	4.05	4.67	8.84	1.06	4.86	4.37
Merged-chr11-83443045-1	chr11	83442545	83443545	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080453, intron 7 of 7)	intron (NM_080453, intron 7 of 7)	5351.0	NM_025492	66330.0	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	2.86	0.92	1.85	3.37	0.47	3.22	1.06	3.1	1.25
Merged-chr16-21335936-2	chr16	21335427	21336427	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-2571.0	NR_131983	76222.0	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	5.15	6.45	9.25	4.05	1.87	8.04	4.22	7.07	4.37
Merged-chr19-42537844-2	chr19	42537347	42538347	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	19042.0	NM_177464	52013.0	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	8.58	8.75	3.7	7.42	7.93	1.61	14.79	6.19	3.75
Merged-chrX-99214384-1	chrX	99213884	99214884	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	78323.0	NM_010110	13641.0	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	1.72	2.3	3.7	3.37	2.33	1.61	1.06	0.88	1.25
Merged-chr9-99130639-2	chr9	99130126	99131126	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	9585.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	17.16	17.51	21.27	12.82	13.53	14.47	11.62	12.38	6.25
Merged-chr7-104216383-1	chr7	104215883	104216883	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2412.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	3.43	1.38	1.85	3.37	2.33	0.0	3.17	0.88	2.5
Merged-chr3-133546503-1	chr3	133546003	133547003	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2113.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	38.9	42.39	37.0	35.76	25.19	36.97	30.63	24.32	27.48
Merged-chr15-74674547-1	chr15	74674047	74675047	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1977.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	2.86	2.76	0.92	6.75	1.87	9.65	3.17	2.65	2.5
Merged-chr1-34004540-1	chr1	34004040	34005040	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-7285.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	29.75	17.97	23.12	8.1	12.6	12.06	14.79	11.05	6.25
Merged-chr8-120752113-1	chr8	120751613	120752613	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 6 of 8)	intron (NM_001301811, intron 6 of 8)	13474.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	9.72	11.52	20.35	16.19	10.73	16.88	9.51	11.05	11.24
Merged-chr11-98789969-1	chr11	98789469	98790469	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5547.0	NM_001361931	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	18.31	23.5	32.37	39.81	21.93	31.35	46.47	49.08	34.97
Merged-chr11-30025112-1	chr11	30024612	30025612	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146016, intron 1 of 41)	intron (NM_146016, intron 1 of 41)	921.0	NM_146016	237711.0	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	25.74	28.11	14.8	12.82	16.33	29.74	26.4	42.89	18.74
Merged-chr16-17292991-1	chr16	17292491	17293491	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001983, intron 41 of 54)	intron (NM_001001983, intron 41 of 54)	16691.0	NM_177473	224019.0	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	1.14	4.15	7.4	4.72	4.2	0.0	2.11	1.77	7.49
Merged-chr11-107147497-2	chr11	107146992	107147992	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-9916.0	NM_001308498	105734734.0		NM_001308498		Gm11715	-	predicted gene 11715	protein-coding	12.01	10.6	3.7	9.45	16.33	6.43	7.39	5.75	2.5
Merged-chr8-57485231-1	chr8	57484731	57485731	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021788, intron 2 of 3)	intron (NM_021788, intron 2 of 3)	2629.0	NM_021788	60406.0	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	10.87	6.91	3.7	8.77	6.53	18.49	12.67	12.82	6.25
Merged-chr5-43788140-1	chr5	43787640	43788640	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5991.0	NM_178729	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	29.17	25.34	15.72	47.23	31.72	30.54	29.57	16.36	26.85
Merged-chr9-25309988-1	chr9	25309488	25310488	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	57096.0	NM_001359738	235072.0	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	5.15	5.53	0.0	0.67	5.13	9.65	5.28	4.86	1.25
Merged-chr8-106017310-1	chr8	106016810	106017810	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301176, intron 2 of 14)	intron (NM_001301176, intron 2 of 14)	-5824.0	NM_028038	71986.0	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	8.01	4.15	0.0	2.02	3.27	3.22	3.17	3.98	0.62
Merged-chr7-98799921-1	chr7	98799421	98800421	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-35191.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	2.86	2.3	0.0	5.4	2.8	6.43	4.22	1.33	8.74
Merged-chr6-66893078-1	chr6	66892578	66893578	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3319.0	NM_001177559	14701.0	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	5.15	3.23	3.7	1.35	3.73	5.63	3.17	4.42	1.25
Merged-chr14-21973334-1	chr14	21972834	21973834	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63A|DNA|hAT-Blackjack	16267.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	2.29	3.69	4.62	2.02	0.93	3.22	1.06	3.54	2.5
Merged-chr3-126660431-1	chr3	126659931	126660931	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	63480.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	21.17	15.21	16.65	29.01	9.8	8.84	15.84	9.29	5.0
Merged-chr11-11455187-1	chr11	11454687	11455687	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015785, intron 2 of 7)	L1M4|LINE|L1	7232.0	NM_015785	53604.0	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	5.72	5.53	3.7	0.67	4.2	3.22	3.17	3.54	5.62
Merged-chr10-22747798-1	chr10	22747298	22748298	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16351.0	NM_011603	237336.0	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	16.59	14.75	11.1	10.12	11.66	18.49	3.17	3.98	1.25
Merged-chr2-28841866-2	chr2	28841365	28842365	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033294, intron 1 of 19)	intron (NM_001033294, intron 1 of 19)	1459.0	NM_001033294	227674.0	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	10.3	20.74	9.25	16.87	12.13	20.09	21.12	17.24	23.73
Merged-chr10-80174893-1	chr10	80174393	80175393	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_027207, exon 3 of 3)	3' UTR (NM_027207, exon 3 of 3)	1949.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	5.72	5.53	2.77	4.05	1.87	7.23	6.34	4.86	0.62
Merged-chr11-77443864-1	chr11	77443364	77444364	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 13 of 14)	intron (NM_177710, intron 13 of 14)	-20049.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	26.89	30.87	13.87	30.36	23.33	25.72	22.18	46.87	10.62
Merged-chr9-103175244-1	chr9	103174744	103175744	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173781, intron 7 of 7)	intron (NM_173781, intron 7 of 7)	26821.0	NM_009275	20818.0	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	2.29	3.23	1.85	3.37	1.87	4.82	7.39	1.33	1.25
Merged-chr1-85794590-2	chr1	85794022	85795022	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355047, intron 1 of 9)	intron (NM_001355047, intron 1 of 9)	505.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	85.24	100.45	86.02	91.09	137.15	117.35	95.06	89.32	66.82
Merged-chr5-124631834-1	chr5	124631334	124632334	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011596, intron 1 of 19)	intron (NM_011596, intron 1 of 19)	2782.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	10.3	7.83	15.72	6.75	7.46	4.82	7.39	5.75	10.62
Merged-chr2-151632294-1	chr2	151631794	151632794	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291076, intron 1 of 5)	CpG-8656	299.0	NM_198214	241727.0	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	10.87	2.3	1.85	5.4	0.47	0.0	2.11	0.0	5.0
Merged-chr9-106322758-2	chr9	106322293	106323293	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	41732.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	17.16	20.27	24.05	19.57	13.06	32.15	21.12	11.94	29.98
Merged-chr13-112995759-2	chr13	112995258	112996258	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037914, intron 3 of 6)	intron (NM_001037914, intron 3 of 6)	1890.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.0	2.76	1.85	4.72	3.27	0.0	5.28	4.86	1.25
Merged-chr8-68002358-1	chr8	68001858	68002858	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27784.0	NM_177698	234353.0	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	9.72	5.07	11.1	6.75	5.13	9.65	5.28	6.63	5.0
Merged-chr5-118246143-1	chr5	118245643	118246643	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081236, intron 1 of 4)	intron (NM_001081236, intron 1 of 4)	916.0	NM_001081236	76792.0	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	8.58	7.83	4.62	7.42	5.6	3.22	9.51	8.84	8.74
Merged-chr1-173802791-1	chr1	173802291	173803291	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35872.0	NM_008329	15951.0	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	30.32	16.59	1.85	20.92	7.46	11.25	73.93	67.21	45.59
Merged-chr7-89126683-1	chr7	89126183	89127183	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	212104.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	1.14	1.38	0.0	2.7	2.33	0.0	1.06	1.33	1.25
Merged-chr2-18916133-2	chr2	18915643	18916643	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81978.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	22.88	19.81	12.95	14.84	14.46	9.65	19.01	9.73	3.75
Merged-chr3-103097823-1	chr3	103097323	103098323	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033303, intron 13 of 15)	intron (NM_001033303, intron 13 of 15)	23809.0	NM_001033303	229665.0	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	1.72	3.69	0.0	3.37	0.93	0.8	3.17	0.44	3.75
Merged-chr3-126652548-1	chr3	126652048	126653048	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	55597.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.0	10.6	13.87	4.05	3.73	6.43	12.67	3.1	5.0
Merged-chr6-53577209-1	chr6	53576709	53577709	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172728, intron 1 of 6)	intron (NM_172728, intron 1 of 6)	3835.0	NM_172728	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	14.87	3.23	11.1	10.8	2.8	3.22	6.34	1.77	3.75
Merged-chr15-96821662-1	chr15	96821162	96822162	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-121934.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.0	3.69	7.4	4.72	0.0	0.0	6.34	3.54	4.37
Merged-chr3-142526999-1	chr3	142526499	142527499	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3337.0	NM_001083312	229900.0	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	6.29	11.52	11.1	6.75	4.2	0.0	20.07	17.69	8.74
Merged-chr11-110868518-1	chr11	110868018	110869018	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99515.0	NM_010604	16517.0	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	4.58	0.46	3.7	4.05	3.27	0.8	8.45	8.84	1.25
Merged-chr10-93485164-1	chr10	93484664	93485664	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001313897)	TTS (NM_001313897)	-3604.0	NM_010401	15109.0	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	112.12	112.89	68.45	120.77	91.9	127.0	42.25	30.95	29.35
Merged-chr15-88750801-1	chr15	88750301	88751301	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_181412)	promoter-TSS (NM_181412)	-910.0	NM_181412	223773.0	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	96.11	92.62	64.75	97.83	102.63	74.75	114.07	111.43	63.08
Merged-chr4-131922376-1	chr4	131921876	131922876	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001201367, exon 1 of 1)	exon (NM_001201367, exon 1 of 1)	605.0	NM_001201367	623230.0	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	9.15	4.61	11.1	8.1	5.13	11.25	4.22	0.88	6.25
Merged-chr3-126629286-2	chr3	126628796	126629796	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	32345.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	259.14	377.84	165.57	254.37	272.91	172.81	223.91	243.19	99.92
Merged-chr19-44895455-1	chr19	44894955	44895955	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35664.0	NM_172638	226151.0	Mm.212609	NM_172638	ENSMUSG00000036097	Slf2	3632432H19|Fam178a	SMC5-SMC6 complex localization factor 2	protein-coding	2.86	2.76	1.85	0.0	1.4	0.0	0.0	0.88	2.5
Merged-chr8-37927285-1	chr8	37926785	37927785	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	324917.0	NR_029884	723860.0		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	4.0	3.23	5.55	2.02	1.87	1.61	5.28	6.63	13.12
Merged-chr13-13523685-1	chr13	13523185	13524185	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66724.0	NM_010748	17101.0	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	5.15	5.07	0.0	8.1	7.93	3.22	7.39	7.07	4.37
Merged-chr3-106809486-1	chr3	106808986	106809986	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	13071.0	NM_146489	258482.0	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	1.72	5.99	0.0	5.4	5.6	8.04	5.28	3.54	6.25
Merged-chr8-117613061-1	chr8	117612561	117613561	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172285, intron 28 of 32)	intron (NM_172285, intron 28 of 32)	58486.0	NM_028725	74032.0	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	2.86	2.3	7.4	2.02	0.0	8.04	15.84	6.19	3.12
Merged-chr4-132813703-1	chr4	132813203	132814203	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17339.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	24.03	27.65	10.17	13.49	13.06	25.72	24.29	27.41	24.36
Merged-chr1-166268537-1	chr1	166268037	166269037	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357432, intron 1 of 8)	intron (NM_001357432, intron 1 of 8)	14398.0	NM_001357428	100039795.0	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	5.15	4.15	0.0	0.67	2.33	6.43	2.11	2.65	4.37
Merged-chr8-25975510-1	chr8	25975010	25976010	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029884, intron 1 of 17)	B3|SINE|B2	1234.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	25.17	16.59	12.02	23.62	12.13	23.31	89.78	103.91	53.08
Merged-chr7-126236019-1	chr7	126235519	126236519	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131046, intron 2 of 4)	ID4_|SINE|ID	1585.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	9.72	3.69	11.1	12.82	10.73	24.11	9.51	6.19	8.74
Merged-chr13-100198913-1	chr13	100198413	100199413	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126182, intron 1 of 15)	Lx9|LINE|L1	3209.0	NM_001126182	17948.0	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	20.02	25.34	41.62	16.19	14.0	14.47	34.85	41.56	26.23
Merged-chr18-38978082-1	chr18	38977582	38978582	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15063.0	NM_001361073	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.0	4.15	1.85	3.37	2.33	2.41	1.06	3.54	0.0
Merged-chr1-171344460-1	chr1	171343960	171344960	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360825)	promoter-TSS (NM_001360825)	-494.0	NM_001360825	18637.0	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	17.16	18.89	9.25	13.49	13.53	16.08	9.51	11.05	8.74
Merged-chr6-28882532-1	chr6	28882032	28883032	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 18 of 23)	intron (NM_019776, intron 18 of 23)	-50785.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	7.44	2.76	1.85	4.05	3.27	3.22	3.17	2.65	2.5
Merged-chr2-164432584-1	chr2	164432084	164433084	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011521, intron 1 of 4)	intron (NM_011521, intron 1 of 4)	10604.0	NM_011521	20971.0	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	5.15	2.76	5.55	5.4	4.67	1.61	2.11	0.0	4.37
Merged-chr9-107295707-1	chr9	107295207	107296207	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009895)	promoter-TSS (NM_009895)	-952.0	NM_009895	12700.0	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	10.87	7.83	3.7	9.45	4.2	3.22	14.79	8.84	5.0
Merged-chr4-116704019-2	chr4	116703514	116704514	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025962, intron 3 of 3)	B3|SINE|B2	4371.0	NM_025962	67096.0	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	10.3	7.37	9.25	6.07	2.8	9.65	14.79	7.52	5.62
Merged-chr4-87668645-1	chr4	87668145	87669145	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137678.0	NM_001286158	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.0	4.61	4.62	3.37	7.0	6.43	2.11	2.21	6.25
Merged-chrX-101132737-1	chrX	101132237	101133237	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110311, intron 4 of 5)	intron (NM_001110311, intron 4 of 5)	-47332.0	NM_007515	11989.0	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	16.59	16.13	12.95	18.22	24.72	7.23	14.79	11.5	4.37
Merged-chr11-59527556-1	chr11	59527056	59528056	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14013.0	NM_001359638	216799.0	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	78.94	70.5	67.52	97.16	57.38	106.1	66.54	99.05	76.82
Merged-chr4-62397739-1	chr4	62397239	62398239	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	10884.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	12.01	10.14	7.4	8.77	5.6	21.7	17.96	8.84	16.24
Merged-chr10-42897786-1	chr10	42897286	42898286	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359265, intron 1 of 6)	intron (NM_001359265, intron 1 of 6)	37274.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	6.29	4.15	2.77	8.1	2.8	2.41	4.22	0.88	6.25
Merged-chr12-75836645-1	chr12	75836145	75837145	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	18327.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	8.58	5.99	12.95	5.4	6.06	5.63	7.39	2.65	3.12
Merged-chr8-105533504-1	chr8	105533004	105534004	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 2 of 7)	intron (NM_013477, intron 2 of 7)	14758.0	NM_008289	15484.0	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	13.16	12.9	12.02	7.42	8.86	18.49	5.28	5.31	4.37
Merged-chr1-149971733-1	chr1	149971233	149972233	+	613.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-10443.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	7.44	8.75	5.55	10.8	4.2	12.86	10.56	7.52	5.0
Merged-chr8-108896671-1	chr8	108896171	108897171	+	613.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-40189.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	22.31	11.06	33.3	24.96	20.53	20.9	10.56	3.98	5.0
Merged-chr5-5421660-1	chr5	5421160	5422160	+	613.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41409.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	6.86	9.22	0.0	7.42	8.86	5.63	3.17	4.42	11.24
Merged-chr19-7441759-2	chr19	7441202	7442202	+	612.950012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053076, intron 1 of 6)	intron (NM_053076, intron 1 of 6)	19129.0	NR_105957	102466781.0		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	13.73	11.06	25.9	12.82	10.73	27.33	12.67	9.29	13.74
Merged-chr18-32560033-2	chr18	32559523	32560523	+	612.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001048207)	promoter-TSS (NM_001048207)	11.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	4.0	5.99	8.32	8.1	1.87	4.82	3.17	3.98	3.75
Merged-chr10-81526957-3	chr10	81526463	81527463	+	612.766663	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2738.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	10.87	2.76	1.85	7.42	3.27	3.22	1.06	0.44	2.5
Merged-chr5-5418496-2	chr5	5418002	5419002	+	612.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-38251.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	30.89	35.48	27.75	24.96	34.52	39.39	35.91	27.86	36.85
Merged-chr7-16042989-2	chr7	16042467	16043467	+	612.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28878.0	NM_001347559	666528.0	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	105.26	143.76	118.39	104.58	123.62	136.64	89.78	119.83	64.33
Merged-chr8-72539458-2	chr8	72538950	72539950	+	612.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027485, intron 1 of 2)	B3A|SINE|B2	8860.0	NM_027485	70625.0	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	4.58	5.99	16.65	4.05	1.87	1.61	5.28	3.98	5.0
Merged-chr1-192742107-2	chr1	192741602	192742602	+	612.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 3 of 11)	intron (NM_144881, intron 3 of 11)	29117.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	6.29	12.9	7.4	2.7	2.33	1.61	11.62	8.4	8.74
Merged-chrX-61815084-1	chrX	61814584	61815584	+	612.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_3-I_MM-int|LTR|ERVK	105468.0	NM_001018087	434784.0	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Rtl7|Sirh7	regulator of NFKB signaling	protein-coding	3.43	9.68	1.85	2.02	4.2	1.61	9.51	14.59	3.12
Merged-chr10-61382529-2	chr10	61382018	61383018	+	612.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013753, intron 1 of 19)	intron (NM_013753, intron 1 of 19)	1005.0	NM_013753	27355.0	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	24.03	14.75	15.72	17.54	25.66	27.33	22.18	23.43	21.86
Merged-chr11-72564514-2	chr11	72564018	72565018	+	612.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14272.0	NM_029932	77577.0	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	4.0	4.61	1.85	8.1	0.47	1.61	3.17	0.44	7.49
Merged-chr15-89158147-2	chr15	89157634	89158634	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159521, intron 31 of 37)	intron (NM_001159521, intron 31 of 37)	4774.0	NR_106066	102465672.0		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	5.15	1.84	0.0	4.05	0.93	3.22	4.22	0.44	1.25
Merged-chr2-4864582-2	chr2	4864081	4865081	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16983.0	NM_175400	109079.0	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	5.15	5.07	5.55	8.1	0.0	1.61	6.34	0.44	1.25
Merged-chr2-32380247-1	chr2	32379747	32380747	+	612.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198001, intron 1 of 1)	intron (NM_198001, intron 1 of 1)	1668.0	NM_198001	73737.0	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	5.72	2.3	8.32	8.77	0.93	0.8	3.17	1.77	11.24
Merged-chr7-6152940-2	chr7	6152462	6153462	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013012, intron 1 of 2)	intron (NM_001013012, intron 1 of 2)	3009.0	NM_001013012	67109.0	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	26.89	36.4	37.92	39.81	27.99	53.85	34.85	29.63	33.72
Merged-chr11-69037859-1	chr11	69037359	69038359	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Thr-ACY|tRNA|tRNA	-7778.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	16.59	36.86	23.12	14.84	17.73	17.68	24.29	31.39	16.86
Merged-chr5-8256601-1	chr5	8256101	8257101	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001007220, intron 3 of 28)	RLTR26_Mus|LTR|ERVK	111559.0	NM_001007221	11496.0	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	1.72	2.3	3.7	3.37	1.87	1.61	5.28	3.1	9.37
Merged-chr16-37651783-1	chr16	37651283	37652283	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026610, intron 1 of 2)	intron (NM_026610, intron 1 of 2)	2585.0	NM_026610	68194.0	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	8.01	5.99	2.77	8.1	6.53	14.47	13.73	15.92	8.12
Merged-chr1-188980293-3	chr1	188979794	188980794	+	612.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153196, intron 13 of 17)	intron (NR_153196, intron 13 of 17)	27546.0	NM_001359577	226823.0	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	4.58	2.76	1.85	2.02	1.4	3.22	5.28	2.21	5.0
Merged-chr1-172205879-2	chr1	172205376	172206376	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001329871, intron 1 of 3)	intron (NM_001329871, intron 1 of 3)	928.0	NM_001329871	18611.0	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	80.66	84.78	51.8	78.94	63.91	65.11	47.53	54.39	24.98
Merged-chr8-110446830-1	chr8	110446330	110447330	+	612.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172916, intron 20 of 86)	MTD|LTR|ERVL-MaLR	55526.0	NR_105058	100861869.0	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.57	1.38	3.7	2.02	1.87	1.61	6.34	8.4	6.25
Merged-chr13-60761772-1	chr13	60761272	60762272	+	612.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285917, exon 26 of 27)	exon (NM_001285917, exon 26 of 27)	24592.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.0	2.3	9.25	2.02	2.33	6.43	2.11	0.0	3.75
Merged-chr5-25246038-2	chr5	25245544	25246544	+	612.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359890)	promoter-TSS (NM_001359890)	-329.0	NM_001359890	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	6.86	12.44	22.2	2.7	3.27	12.06	0.0	3.54	2.5
Merged-chr16-17406724-3	chr16	17406266	17407266	+	612.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001983)	promoter-TSS (NM_001001983)	-452.0	NM_001001983	224020.0	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase alpha	protein-coding	94.96	123.03	106.37	96.48	112.43	108.51	118.29	127.79	49.96
Merged-chr6-39539833-1	chr6	39539333	39540333	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172477, intron 1 of 18)	intron (NM_172477, intron 1 of 18)	18001.0	NM_172477	209773.0	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	5.15	5.53	10.17	4.05	0.0	4.82	6.34	4.42	5.0
Merged-chr1-105989013-3	chr1	105988509	105989509	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	1273.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	228.25	245.14	117.47	255.72	228.12	112.53	323.19	409.0	155.51
Merged-chr19-60837966-1	chr19	60837466	60838466	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001362384, exon 15 of 15)	3' UTR (NM_001362384, exon 15 of 15)	23462.0	NM_001362385	94281.0	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	6.86	3.69	3.7	0.67	0.47	10.45	0.0	1.77	9.37
Merged-chr15-35147045-1	chr15	35146545	35147545	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357821, intron 1 of 11)	intron (NM_001357821, intron 1 of 11)	8761.0	NM_001357821	56274.0	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	3.43	5.07	0.92	7.42	2.33	3.22	5.28	3.54	4.37
Merged-chrX-73999523-1	chrX	73999023	74000023	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24075.0	NR_039594	100628601.0		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	20.02	17.97	12.95	17.54	19.59	12.06	10.56	11.94	11.24
Merged-chr15-41639057-1	chr15	41638557	41639557	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	-149938.0	NM_001358976	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	3.43	2.76	1.85	3.37	2.8	4.82	5.28	0.88	5.0
Merged-chr16-33080254-3	chr16	33079754	33080754	+	612.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172823, intron 6 of 16)	intron (NM_172823, intron 6 of 16)	17733.0	NM_172823	239833.0	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	14.3	11.06	7.4	10.8	9.33	9.65	6.34	5.31	9.99
Merged-chr9-44322387-1	chr9	44321887	44322887	+	612.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2105.0	NM_027909	71764.0	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	5.72	4.61	6.47	4.72	7.93	8.04	10.56	5.31	5.0
Merged-chr8-71988662-2	chr8	71988149	71989149	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024444, exon 13 of 13)	exon (NM_024444, exon 13 of 13)	20977.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	7.44	9.68	9.25	5.4	4.2	12.86	17.96	6.63	6.25
Merged-chr11-4236802-1	chr11	4236302	4237302	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	17.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	8.01	2.76	11.1	18.89	17.73	22.51	7.39	2.21	1.87
Merged-chr9-108847758-2	chr9	108847278	108848278	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359572, intron 34 of 35)	intron (NM_001359572, intron 34 of 35)	-6265.0	NM_134420	171429.0	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	19.45	7.83	14.8	32.39	12.6	17.68	61.26	42.45	17.49
Merged-chr9-66344823-2	chr9	66344322	66345322	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-5628.0	NM_145617	235439.0	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	15.45	18.89	38.85	21.59	21.46	20.9	17.96	16.36	11.87
Merged-chr7-145034230-2	chr7	145033713	145034713	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR9D|LTR|ERVK	-94288.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	2.29	1.84	1.85	2.7	3.73	0.0	3.17	3.1	6.87
Merged-chr19-47650998-2	chr19	47650491	47651491	+	612.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007732, intron 45 of 52)	intron (NM_007732, intron 45 of 52)	41051.0	NM_007732	12821.0	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	1.72	0.46	6.47	0.0	0.93	3.22	1.06	2.21	2.5
Merged-chr13-19430093-2	chr13	19429608	19430608	+	612.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-34295.0	NM_001347485	76205.0	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	5.15	4.15	5.55	5.4	3.73	4.82	6.34	3.1	3.75
Merged-chr8-33654696-2	chr8	33654221	33655221	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	L2c|LINE|L2	1483.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	18.31	26.73	24.97	16.87	21.93	14.47	90.83	72.52	90.56
Merged-chr7-35649297-2	chr7	35648807	35649807	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-1825.0	NM_019746	56330.0	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	1.14	4.61	1.85	4.05	1.4	0.0	1.06	1.77	2.5
Merged-chr13-108214333-2	chr13	108213827	108214827	+	612.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029001)	promoter-TSS (NM_029001)	-77.0	NM_029001	74559.0	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	3.43	1.84	3.7	1.35	0.93	0.0	4.22	0.44	1.25
Merged-chr2-178507532-1	chr2	178507032	178508032	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	77017.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	12.59	1.38	2.77	2.02	1.87	1.61	2.11	2.21	1.25
Merged-chr15-74594237-1	chr15	74593737	74594737	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42081.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	6.29	5.07	3.7	6.75	10.73	15.27	6.34	4.86	7.49
Merged-chr11-83704950-2	chr11	83704448	83705448	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081957, intron 2 of 2)	intron (NM_001081957, intron 2 of 2)	892.0	NM_001081957	100034251.0	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428	WAP four-disulfide core domain 17	protein-coding	147.02	150.68	141.52	130.9	160.48	163.17	179.55	242.75	120.53
Merged-chr9-3005932-1	chr9	3005432	3006432	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	32811.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	2.86	14.28	1.85	2.02	18.19	0.0	0.0	6.63	3.75
Merged-chr5-80953110-1	chr5	80952610	80953610	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67461.0	NM_001347367	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	11.44	8.29	18.5	8.77	2.8	3.22	7.39	6.19	2.5
Merged-chr11-54072798-2	chr11	54072311	54073311	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3794.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	4.0	2.3	0.0	7.42	1.4	4.82	4.22	8.4	3.75
Merged-chr11-115705758-2	chr11	115705237	115706237	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008163, intron 1 of 5)	intron (NM_008163, intron 1 of 5)	2860.0	NM_008163	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	62.35	47.92	47.17	40.48	31.72	38.58	54.92	71.63	46.84
Merged-chr18-60736834-1	chr18	60736334	60737334	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001348146, intron 1 of 6)	intron (NM_001348146, intron 1 of 6)	-3693.0	NM_001348102	15531.0	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	18.88	17.97	9.25	13.49	10.26	30.54	24.29	9.29	15.61
Merged-chr18-4842772-1	chr18	4842272	4843272	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045881, intron 5 of 9)	intron (NR_045881, intron 5 of 9)	30286.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	6.86	1.38	5.55	5.4	2.8	3.22	2.11	0.44	1.87
Merged-chr13-49147502-1	chr13	49147002	49148002	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 1 of 29)	CpG-3837	826.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	6.29	0.92	3.7	2.02	2.33	0.0	7.39	0.0	0.0
Merged-chr19-12465318-1	chr19	12464818	12465818	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010821)	TTS (NM_010821)	4539.0	NM_010821	17476.0	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	235.11	330.38	195.17	226.71	249.58	267.66	218.63	263.53	114.91
Merged-chr3-146451557-1	chr3	146451057	146452057	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028836, intron 1 of 5)	ORR1B1|LTR|ERVL-MaLR	1090.0	NM_001293672	74245.0	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	12.01	20.74	18.5	20.24	18.19	12.06	16.9	15.03	6.25
Merged-chr18-77821514-1	chr18	77821014	77822014	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-25124.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	80.09	52.53	62.9	58.7	41.99	74.75	41.19	41.56	28.73
Merged-chr5-123436956-1	chr5	123436456	123437456	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133917, intron 1 of 16)	intron (NM_133917, intron 1 of 16)	42158.0	NM_177582	208104.0	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	28.6	34.1	12.02	22.27	18.19	10.45	25.35	13.71	21.23
Merged-chr13-105224190-2	chr13	105223691	105224691	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360891, intron 5 of 7)	intron (NM_001360891, intron 5 of 7)	68823.0	NM_027934	71816.0	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	14.3	17.97	5.55	11.47	8.86	3.22	7.39	11.05	0.62
Merged-chr2-157259916-1	chr2	157259416	157260416	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039557, intron 4 of 24)	intron (NM_001039557, intron 4 of 24)	-19182.0	NM_001355163	20014.0	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	4.58	0.46	0.0	4.05	2.8	1.61	1.06	1.33	4.37
Merged-chr12-33119206-1	chr12	33118706	33119706	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015602, exon 5 of 6)	non-coding (NR_015602, exon 5 of 6)	-26331.0	NM_001024478	68764.0	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	4.0	1.84	16.65	3.37	9.8	3.22	6.34	4.42	0.0
Merged-chr9-66127289-1	chr9	66126789	66127789	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359210, intron 1 of 3)	intron (NM_001359210, intron 1 of 3)	678.0	NM_026635	68250.0	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	53.2	43.77	54.57	53.98	42.92	76.36	92.94	99.49	54.96
Merged-chr4-32574714-1	chr4	32574214	32575214	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109661, intron 3 of 4)	B3|SINE|B2	-3052.0	NR_026843	414068.0	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	26.89	19.81	21.27	26.99	24.26	43.4	23.24	23.43	22.48
Merged-chr15-66980055-1	chr15	66979555	66980555	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10414.0	NM_008681	17988.0	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	2.29	3.69	12.02	7.42	2.33	4.02	7.39	3.98	0.0
Merged-chr2-45099959-1	chr2	45099459	45100459	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	10318.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	90.38	101.37	64.75	89.06	99.37	73.95	101.39	125.58	62.45
Merged-chr15-87909298-1	chr15	87908798	87909798	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113355.0	NR_105817	102465209.0		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	1.72	2.3	1.85	2.02	5.13	0.8	1.06	0.44	1.25
Merged-chr5-124446729-1	chr5	124446229	124447229	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310727)	promoter-TSS (NM_001310727)	25.0	NM_001310727	67956.0	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	9.72	5.53	11.1	6.75	4.2	8.04	13.73	8.4	8.74
Merged-chr5-31290680-1	chr5	31290180	31291180	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026298, intron 1 of 47)	intron (NM_026298, intron 1 of 47)	434.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	141.87	184.77	108.22	143.71	198.27	122.18	121.46	194.11	98.68
Merged-chr3-107998285-1	chr3	107997785	107998785	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-11865.0	NM_008183	14863.0	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	4.58	2.76	5.55	3.37	1.4	2.41	0.0	1.33	2.5
Merged-chr12-85615736-1	chr12	85615236	85616236	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 2 of 3)	intron (NM_001205053, intron 2 of 3)	15718.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	8.58	5.99	8.32	4.72	7.0	12.86	17.96	8.84	9.37
Merged-chr13-89634370-1	chr13	89633870	89634870	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93734.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.57	2.76	0.0	0.67	7.0	0.0	2.11	2.21	2.5
Merged-chr9-69949199-1	chr9	69948699	69949699	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-40267.0	NM_016787	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	6.86	0.46	5.55	3.37	0.47	4.02	2.11	4.42	1.25
Merged-chr16-94503315-1	chr16	94502815	94503815	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007834, intron 5 of 7)	intron (NM_007834, intron 5 of 7)	23314.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	20.59	30.41	16.65	43.86	31.72	31.35	25.35	22.55	18.74
Merged-chr15-41029803-1	chr15	41029303	41030303	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356998, intron 4 of 6)	intron (NM_001356998, intron 4 of 6)	-143898.0	NR_151516	100418302.0		NR_151516		4930555K19Rik	-	leucine rich repeat and sterile alpha motif containing 1 pseudogene	pseudo	4.58	3.69	0.0	2.7	4.67	0.0	3.17	1.33	0.0
Merged-chr6-39067372-1	chr6	39066872	39067872	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040523, intron 1 of 3)	intron (NR_040523, intron 1 of 3)	214.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	6.86	3.69	12.95	6.75	5.6	12.86	1.06	2.65	2.5
Merged-chr14-66261133-1	chr14	66260633	66261633	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	19919.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	17.73	11.98	10.17	11.47	7.93	10.45	14.79	8.84	12.49
Merged-chr14-56887710-1	chr14	56887210	56888210	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360643, intron 1 of 24)	intron (NM_001360643, intron 1 of 24)	867.0	NM_001360643	76007.0	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	81.23	125.79	69.37	58.03	65.78	107.71	104.56	95.95	64.95
Merged-chr11-8567988-2	chr11	8567480	8568480	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 4 of 30)	Lx8|LINE|L1	96555.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	70.36	58.06	41.62	58.7	37.79	75.56	42.25	49.52	23.73
Merged-chrX-23693615-1	chrX	23693115	23694115	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	564.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	60.64	67.27	73.07	62.07	57.85	45.01	74.99	75.61	78.69
Merged-chr11-5745062-1	chr11	5744562	5745562	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361588, intron 1 of 6)	intron (NM_001361588, intron 1 of 6)	-3886.0	NM_178623	72046.0	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	3.43	5.07	9.25	11.47	7.93	9.65	23.24	27.41	14.99
Merged-chr5-24081997-1	chr5	24081497	24082497	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18593.0	NM_026448	52323.0	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	1.72	1.38	1.85	3.37	4.67	3.22	1.06	2.21	3.75
Merged-chr5-103937700-1	chr5	103937200	103938200	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-26441.0	NM_001359986	246293.0	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	5.15	2.76	1.85	5.4	3.27	0.0	0.0	2.21	13.74
Merged-chr4-40244923-1	chr4	40244423	40245423	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5098.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	40.04	51.61	43.47	22.27	43.85	32.96	45.42	54.83	33.1
Merged-chr13-31227626-1	chr13	31227126	31228126	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045957, intron 1 of 2)	L1MA6|LINE|L1	13460.0	NR_045957	73924.0	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	28.6	39.17	21.27	28.34	31.26	14.47	16.9	15.92	9.37
Merged-chr12-72086566-1	chr12	72086066	72087066	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205067, intron 1 of 6)	B1_Mus2|SINE|Alu	727.0	NM_024205	104771.0	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	54.92	42.85	48.1	58.7	52.72	71.54	62.31	68.98	33.1
Merged-chr16-65404607-1	chr16	65404107	65405107	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116022.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	6.29	6.91	0.0	4.72	4.67	5.63	4.22	7.52	4.37
Merged-chr5-130852274-2	chr5	130851802	130852802	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	403510.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	16.02	25.8	21.27	20.92	16.33	28.94	25.35	22.99	19.36
Merged-chr13-110523219-1	chr13	110522719	110523719	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	128175.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	4.0	3.23	0.0	9.45	2.8	1.61	2.11	0.44	5.0
Merged-chr13-10542912-1	chr13	10542412	10543412	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182109.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	2.86	2.76	3.7	2.7	5.6	3.22	1.06	3.1	8.74
Merged-chr16-21248917-2	chr16	21248420	21249420	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046162, exon 5 of 5)	non-coding (NR_046162, exon 5 of 5)	7146.0	NR_106145	102465781.0		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	3.43	2.76	0.0	4.05	1.87	9.65	3.17	0.44	3.12
Merged-chr7-126832111-1	chr7	126831611	126832611	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183131)	promoter-TSS (NM_183131)	-615.0	NM_183131	78118.0	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	1.14	5.53	0.0	2.02	2.8	1.61	3.17	0.44	3.12
Merged-chr14-22818224-1	chr14	22817724	22818724	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-275426.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	7.44	5.99	11.1	13.49	8.86	9.65	3.17	1.33	2.5
Merged-chr18-46740951-1	chr18	46740451	46741451	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001303015)	promoter-TSS (NM_001303015)	628.0	NM_026217	67526.0	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	67.5	61.75	37.0	77.59	71.38	53.85	116.18	108.77	44.97
Merged-chr17-14960761-1	chr17	14960261	14961261	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024250, intron 1 of 11)	CpG	499.0	NM_001360983	72057.0	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	52.06	41.47	50.87	44.53	33.12	58.68	49.64	27.41	29.98
Merged-chr15-59651876-1	chr15	59651376	59652376	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144549, intron 2 of 2)	intron (NM_144549, intron 2 of 2)	3222.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	37.76	38.25	33.3	43.18	19.59	24.92	48.58	26.09	23.73
Merged-chr6-83030003-2	chr6	83029512	83030512	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001291799)	TTS (NM_001291799)	3459.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	59.49	67.74	67.52	34.41	28.92	44.21	17.96	16.36	7.49
Merged-chr2-25319057-1	chr2	25318557	25319557	+	612.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_008169, exon 1 of 20)	5' UTR (NM_008169, exon 1 of 20)	130.0	NM_008169	14810.0	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	1.14	3.69	0.0	5.4	0.0	1.61	0.0	0.0	6.25
Merged-chr6-148283577-1	chr6	148283077	148284077	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347518, intron 10 of 18)	intron (NM_001347518, intron 10 of 18)	-71079.0	NR_003634	66184.0	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	5.72	4.15	3.7	2.7	4.2	3.22	2.11	1.77	3.75
Merged-chr6-43420540-1	chr6	43420040	43421040	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-21889.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	5.15	4.15	6.47	2.02	4.2	0.8	6.34	3.98	9.99
Merged-chr12-117728878-1	chr12	117728378	117729378	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175930, intron 21 of 27)	intron (NM_175930, intron 21 of 27)	-114983.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	45.19	42.39	16.65	26.31	25.66	22.51	38.02	34.05	18.74
Merged-chr7-72345638-1	chr7	72345138	72346138	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39043.0	NM_001024703	244049.0	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	2.86	4.61	1.85	0.67	2.8	2.41	2.11	0.44	3.75
Merged-chr10-82985684-1	chr10	82985184	82986184	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_021439, exon 1 of 3)	5' UTR (NM_021439, exon 1 of 3)	187.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.72	6.45	0.0	7.42	6.06	4.82	6.34	2.65	1.25
Merged-chr1-135136690-1	chr1	135136190	135137190	+	612.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177081, intron 5 of 9)	intron (NM_177081, intron 5 of 9)	3381.0	NM_001356382	320139.0	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	2.29	3.23	0.0	4.05	3.73	3.22	0.0	0.0	0.0
Merged-chr14-121641475-1	chr14	121640975	121641975	+	612.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081039, intron 11 of 53)	intron (NM_001081039, intron 11 of 53)	56942.0	NM_001347596	105445.0	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	2.86	2.76	1.85	2.02	2.33	2.41	1.06	0.88	1.25
Merged-chr1-131983132-3	chr1	131982650	131983650	+	611.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_145977)	TTS (NM_145977)	12541.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	9.15	3.69	9.25	5.4	5.13	11.25	8.45	5.31	1.87
Merged-chr2-152397227-4	chr2	152396648	152397648	+	611.875	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011438, exon 1 of 1)	exon (NM_011438, exon 1 of 1)	898.0	NM_011438	20667.0	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	13.73	19.35	22.2	6.75	1.4	1.61	3.17	3.98	5.0
Merged-chr13-37658714-3	chr13	37658195	37659195	+	611.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-167343.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	41.76	27.19	26.82	44.53	22.39	29.74	49.64	33.16	35.6
Merged-chr2-60883109-2	chr2	60882600	60883600	+	611.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020296, intron 1 of 13)	intron (NM_020296, intron 1 of 13)	-1662.0	NM_001141931	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	11.44	24.42	15.72	20.92	13.53	21.7	26.4	23.43	18.11
Merged-chr2-102500167-1	chr2	102499667	102500667	+	611.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-48375.0	NM_010218	14221.0	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1	protein-coding	0.57	5.07	3.7	2.7	0.47	3.22	3.17	4.42	5.62
Merged-chr6-113017830-1	chr6	113017330	113018330	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28472.0	NM_001355266	14911.0	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	12.01	0.92	5.55	7.42	2.33	4.82	8.45	4.86	7.49
Merged-chr5-53355266-1	chr5	53354766	53355766	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88160.0	NM_001145433	66278.0	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	3.43	2.3	0.0	4.05	0.47	1.61	1.06	2.21	0.0
Merged-chr8-24386652-1	chr8	24386152	24387152	+	611.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52294.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	1.72	2.76	3.7	5.4	2.8	0.0	0.0	6.63	1.25
Merged-chr7-114894217-2	chr7	114893695	114894695	+	611.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-54455.0	NR_040317	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	18.88	18.89	13.87	8.1	6.06	22.51	5.28	12.82	16.86
Merged-chr6-4748220-2	chr6	4747721	4748721	+	611.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040611, intron 1 of 1)	CpG	915.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	5.15	2.3	5.55	3.37	3.27	3.22	0.0	3.54	1.25
Merged-chr8-86900014-1	chr8	86899514	86900514	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B1|LTR|ERVL	-14756.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	3.43	2.76	3.7	8.1	2.33	4.82	1.06	2.21	5.0
Merged-chr10-94277932-1	chr10	94277432	94278432	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20771.0	NR_033209	215472.0	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	2.86	2.3	5.55	3.37	0.93	2.41	1.06	3.1	3.75
Merged-chr5-105292422-1	chr5	105291922	105292922	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194336, intron 1 of 10)	intron (NM_194336, intron 1 of 10)	1277.0	NM_194336	100702.0	Mm.491210	NM_194336	ENSMUSG00000104713	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	53.77	35.02	41.62	29.01	23.79	27.33	54.92	46.87	13.74
Merged-chr16-87584844-1	chr16	87584344	87585344	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144854, intron 4 of 4)	intron (NM_144854, intron 4 of 4)	31514.0	NM_144854	224419.0	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	5.72	3.23	1.85	3.37	6.53	6.43	2.11	0.44	3.75
Merged-chr17-87176296-1	chr17	87175796	87176796	+	611.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18646.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	3.43	4.61	3.7	6.75	4.67	9.65	6.34	9.29	9.37
Merged-chr1-88258054-1	chr1	88257554	88258554	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_198652)	TTS (NM_198652)	11354.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	4.58	9.22	15.72	8.1	9.33	16.08	8.45	8.84	16.86
Merged-chr10-67190487-1	chr10	67189987	67190987	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	B3|SINE|B2	4737.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	16.02	5.07	16.65	9.45	8.4	8.84	19.01	8.84	15.61
Merged-chr14-62879663-2	chr14	62879146	62880146	+	611.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	14104.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	41.19	29.03	25.9	38.46	18.19	16.88	53.87	15.48	31.23
Merged-chr2-120170985-1	chr2	120170485	120171485	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177845, intron 17 of 19)	intron (NM_177845, intron 17 of 19)	-16410.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	3.43	0.92	0.92	2.7	2.33	3.22	4.22	0.88	0.0
Merged-chr15-84212306-2	chr15	84211823	84212823	+	611.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178614, intron 14 of 14)	intron (NM_178614, intron 14 of 14)	-19720.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	3.43	4.61	11.1	4.05	0.0	3.22	2.11	3.54	3.75
Merged-chr5-139437682-1	chr5	139437182	139438182	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028469, intron 2 of 4)	intron (NM_028469, intron 2 of 4)	14503.0	NM_029771	76854.0	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	24.03	27.65	23.12	21.59	28.92	21.7	32.74	27.41	34.35
Merged-chr2-33098047-1	chr2	33097547	33098547	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 2 of 29)	intron (NM_001355201, intron 2 of 29)	-10794.0	NM_178888	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	6.86	6.91	5.55	10.12	5.13	4.82	6.34	4.86	7.49
Merged-chr8-126919449-1	chr8	126918949	126919949	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26472.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	14.87	15.67	14.8	17.54	10.73	16.88	6.34	5.75	5.0
Merged-chr11-74469117-1	chr11	74468617	74469617	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 3 of 24)	GA-rich|Low_complexity|Low_complexity	104446.0	NM_001011851	258153.0	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	8.58	9.68	16.65	9.45	8.86	24.11	8.45	4.86	11.24
Merged-chr19-45079908-1	chr19	45079408	45080408	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362398)	TTS (NM_001362398)	3821.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	2.29	2.3	5.55	3.37	2.33	3.22	3.17	2.21	2.5
Merged-chr12-102370228-1	chr12	102369728	102370728	+	611.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 6 of 9)	ID_B1|SINE|B4	69585.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	34.9	40.09	40.7	45.21	43.39	73.14	66.54	35.82	19.36
Merged-chr14-10546131-3	chr14	10545631	10546631	+	611.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	-92673.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	7.44	5.53	1.85	6.75	4.2	6.43	10.56	2.65	8.74
Merged-chr15-81564128-2	chr15	81563618	81564618	+	611.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22096.0	NM_177821	328572.0	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	42.33	36.86	25.9	26.31	23.79	32.96	59.15	54.83	54.96
Merged-chr4-75394461-2	chr4	75393948	75394948	+	611.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-116156.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	2.29	6.91	0.92	4.72	5.6	6.43	3.17	3.98	5.0
Merged-chr7-17091526-1	chr7	17091026	17092026	+	611.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310628, intron 2 of 5)	intron (NM_001310628, intron 2 of 5)	17486.0	NM_007676	26436.0	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	4.0	7.83	7.4	5.4	1.4	1.61	5.28	2.65	7.49
Merged-chrX-140544870-3	chrX	140544379	140545379	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010286, intron 1 of 3)	intron (NM_010286, intron 1 of 3)	-2211.0	NR_122039	14605.0	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	10.87	15.67	8.32	8.1	9.8	13.66	8.45	6.19	5.62
Merged-chr1-124073765-3	chr1	124073273	124074273	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-28214.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	38.33	48.38	42.55	43.86	32.66	52.25	49.64	43.33	57.46
Merged-chr12-72821074-3	chr12	72820602	72821602	+	611.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	59891.0	NM_008910	19042.0	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	4.58	2.76	0.92	5.4	4.2	4.82	3.17	1.77	2.5
Merged-chr2-170144052-2	chr2	170143558	170144558	+	611.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1383.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.44	10.14	5.55	14.84	9.8	7.23	15.84	17.69	8.74
Merged-chr4-134480957-2	chr4	134480470	134481470	+	611.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12650.0	NM_019641	16765.0	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.0	3.23	3.7	6.75	1.87	4.82	2.11	0.0	1.25
Merged-chr16-91724468-3	chr16	91723955	91724955	+	611.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026994, intron 1 of 11)	B3|SINE|B2	4347.0	NM_026994	66609.0	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	6.86	6.45	5.55	18.89	4.67	6.43	3.17	3.54	6.87
Merged-chr8-122911709-2	chr8	122911206	122912206	+	611.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 3 of 12)	RSINE1|SINE|B4	63332.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	18.31	13.36	6.47	24.29	21.93	15.27	48.58	49.08	15.61
Merged-chr18-4313447-1	chr18	4312947	4313947	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39506.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	198.5	206.43	100.82	230.08	254.25	228.28	194.34	225.95	100.55
Merged-chr18-12347531-1	chr18	12347031	12348031	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010680, intron 1 of 74)	intron (NM_010680, intron 1 of 74)	13507.0	NM_010680	16774.0	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	1.14	5.07	0.0	6.07	4.2	5.63	1.06	6.19	2.5
Merged-chr17-47436946-1	chr17	47436446	47437446	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145489, exon 1 of 5)	exon (NM_145489, exon 1 of 5)	307.0	NM_145489	224833.0	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	12.01	4.15	1.85	14.17	6.53	11.25	4.22	8.84	3.12
Merged-chr3-82795826-1	chr3	82795326	82796326	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3e|LINE|L1	80657.0	NM_001277170	633285.0	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|Gm761	RNA binding motif protein 46	protein-coding	5.15	6.45	7.4	5.4	4.2	0.0	6.34	4.42	3.75
Merged-chr1-136707586-1	chr1	136707086	136708086	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037986, intron 2 of 4)	ORR1B2|LTR|ERVL-MaLR	11375.0	NR_037986	100503474.0	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	4.58	0.0	5.55	3.37	0.47	8.84	4.22	5.75	2.5
Merged-chr11-75907635-1	chr11	75907135	75908135	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029548, intron 2 of 7)	intron (NM_029548, intron 2 of 7)	3424.0	NM_029548	380714.0	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	3.43	0.46	0.0	2.7	1.87	3.22	4.22	2.21	6.25
Merged-chr5-110986895-1	chr5	110986395	110987395	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-17249.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	9.72	6.45	12.95	8.1	3.27	0.0	3.17	3.1	7.49
Merged-chr4-136054122-1	chr4	136053622	136054622	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-751.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	10.3	7.83	12.02	7.42	3.73	8.04	13.73	4.42	6.25
Merged-chr2-152781296-1	chr2	152780796	152781796	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149254, exon 2 of 2)	non-coding (NR_149254, exon 2 of 2)	27123.0	NM_053091	84682.0	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit 4I2	protein-coding	2.29	3.23	11.1	4.72	4.67	4.82	7.39	2.65	8.74
Merged-chr10-58496675-1	chr10	58496175	58497175	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1262.0	NM_001162956	76138.0	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	14.3	40.55	34.22	15.52	14.0	25.72	13.73	22.11	33.72
Merged-chr6-83137133-1	chr6	83136633	83137633	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009106)	promoter-TSS (NM_009106)	49.0	NM_133641	20166.0	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	21.17	9.22	18.5	17.54	17.73	16.08	4.22	1.77	2.5
Merged-chr13-104504262-1	chr13	104503762	104504762	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	216427.0	NM_001081020	108154.0	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	5.15	10.14	4.62	1.35	1.4	4.82	3.17	3.54	5.0
Merged-chr18-36508297-1	chr18	36507797	36508797	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7508.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	6.86	2.76	7.4	2.7	1.87	0.0	5.28	1.77	3.12
Merged-chr2-25575530-1	chr2	25575030	25576030	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029293)	promoter-TSS (NM_029293)	-659.0	NM_029293	75454.0	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	27.46	37.32	44.4	55.33	56.45	53.85	49.64	34.05	5.62
Merged-chr6-128851308-1	chr6	128850808	128851808	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001254946, intron 2 of 2)	RMER12B|LTR|ERVK	-24993.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	21.17	22.58	20.35	21.59	19.59	16.08	20.07	6.63	10.62
Merged-chr17-81493378-1	chr17	81492878	81493878	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	245009.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.01	5.07	3.7	6.75	2.33	1.61	5.28	0.88	0.0
Merged-chr14-50837443-1	chr14	50836943	50837943	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009351, exon 37 of 55)	exon (NM_009351, exon 37 of 55)	29527.0	NM_009632	11546.0	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	61.21	64.51	60.12	52.63	48.52	59.48	140.47	188.81	88.68
Merged-chr4-46356012-1	chr4	46355512	46356512	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11818.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	5.72	5.07	1.85	4.05	2.33	0.8	3.17	0.44	0.0
Merged-chr2-167360259-1	chr2	167359759	167360759	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11081.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	5.72	4.15	5.55	4.72	6.06	8.84	15.84	10.61	7.49
Merged-chr7-7130460-1	chr7	7129960	7130960	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_029584)	TTS (NM_029584)	6295.0	NM_029584	76373.0	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	92.1	104.6	54.57	91.76	74.17	64.3	86.61	112.31	50.59
Merged-chr4-86943771-1	chr4	86943271	86944271	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	69357.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	15.45	8.29	5.55	12.82	10.26	8.04	5.28	1.77	8.12
Merged-chr18-52600716-2	chr18	52600208	52601208	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15207.0	NM_025749	66758.0	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.0	3.23	2.77	1.35	1.4	4.82	6.34	4.42	6.25
Merged-chr12-110503007-1	chr12	110502507	110503507	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	17268.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	101.83	83.86	74.0	107.28	57.85	90.83	113.01	106.12	56.83
Merged-chr1-55594157-1	chr1	55593657	55594657	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	L1_Mus2|LINE|L1	188211.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.44	5.07	3.7	8.77	3.27	15.27	7.39	0.0	8.74
Merged-chr8-39498059-1	chr8	39497559	39498559	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	144619.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	3.43	3.69	0.0	2.02	1.87	5.63	5.28	3.1	5.0
Merged-chr6-134218041-1	chr6	134217541	134218541	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	-178288.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	14.3	11.52	5.55	10.8	10.26	5.63	17.96	9.73	14.99
Merged-chr18-61113001-1	chr18	61112501	61113501	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037859, intron 6 of 21)	intron (NM_001037859, intron 6 of 21)	-4467.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	41.19	36.86	28.67	30.36	33.12	54.66	47.53	61.02	25.61
Merged-chr1-56943963-1	chr1	56943463	56944463	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358580, intron 4 of 11)	intron (NM_001358580, intron 4 of 11)	27371.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	1.72	2.76	0.0	2.7	2.33	6.43	1.06	2.21	3.75
Merged-chr17-70756060-1	chr17	70755560	70756560	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347411, intron 9 of 14)	intron (NM_001347411, intron 9 of 14)	90717.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	24.03	12.9	15.72	22.27	16.79	22.51	10.56	10.17	9.99
Merged-chr1-10105408-1	chr1	10104908	10105908	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026493, intron 17 of 29)	intron (NM_026493, intron 17 of 29)	67190.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	6.29	5.53	11.1	5.4	6.53	7.23	4.22	4.42	2.5
Merged-chr13-56748042-1	chr13	56747542	56748542	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	44374.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	13.16	6.91	3.7	8.77	6.53	4.82	7.39	2.65	7.49
Merged-chr11-119305483-2	chr11	119304998	119305998	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5455.0	NM_138669	192170.0	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	3.43	1.38	0.92	2.02	0.47	0.0	0.0	0.0	1.25
Merged-chr7-128057201-1	chr7	128056701	128057701	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5439.0	NM_001082960	16409.0	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	17.73	15.67	14.8	13.49	9.8	6.43	22.18	10.17	8.74
Merged-chr7-45107218-1	chr7	45106718	45107718	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3396.0	NM_010189	14132.0	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	6.86	3.69	9.25	4.05	5.13	16.08	8.45	10.61	1.25
Merged-chr3-8913917-1	chr3	8913417	8914417	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025434, intron 1 of 2)	ERVL-int|LTR|ERVL	9940.0	NM_025434	66230.0	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	5.15	3.23	1.85	0.67	1.4	1.61	4.22	1.33	2.5
Merged-chr8-111662686-2	chr8	111662186	111663186	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011742, intron 2 of 3)	MERVL_2A-int|LTR|ERVL	19243.0	NM_011742	22640.0	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	4.0	3.23	4.62	3.37	5.6	1.61	2.11	2.65	0.62
Merged-chr3-95653128-1	chr3	95652628	95653628	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5593.0	NM_008562	17210.0	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	294.04	302.74	151.69	248.97	193.6	159.95	268.27	305.1	160.5
Merged-chr3-108295586-1	chr3	108295086	108296086	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	11522.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	20.59	30.87	27.75	19.57	18.19	9.65	6.34	9.73	6.87
Merged-chr18-5840124-1	chr18	5839624	5840624	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	247477.0	NM_001360981	21417.0	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	4.58	6.91	12.95	6.75	4.2	4.82	7.39	5.75	6.25
Merged-chr6-106279615-1	chr6	106279115	106280115	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 5 of 25)	intron (NM_001109749, intron 5 of 25)	160850.0	NM_001109751	269784.0	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	1.72	1.84	1.85	4.05	3.27	0.8	0.0	2.65	1.25
Merged-chr15-5241483-1	chr15	5240983	5241983	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001136079, intron 2 of 2)	intron (NM_001136079, intron 2 of 2)	2704.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	22.31	19.35	11.1	10.8	5.6	6.43	32.74	18.57	11.87
Merged-chr2-61595542-2	chr2	61595023	61596023	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149323, intron 2 of 9)	B1_Mur1|SINE|Alu	2426.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	33.75	13.36	14.8	26.99	15.86	21.7	21.12	11.5	5.0
Merged-chr11-75152566-2	chr11	75152064	75153064	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	PB1D10|SINE|Alu	15588.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	137.86	103.22	113.77	136.97	115.23	127.0	162.65	132.21	87.43
Merged-chr16-57535000-1	chr16	57534500	57535500	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	MER58B|DNA|hAT-Charlie	-14242.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	54.92	80.18	45.32	57.35	54.11	69.13	58.09	61.02	46.22
Merged-chr8-125542824-1	chr8	125542324	125543324	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	27039.0	NM_001357372	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	16.59	12.44	18.5	38.46	20.99	30.54	4.22	1.33	8.74
Merged-chr4-59832959-1	chr4	59832459	59833459	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	27309.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	10.3	9.22	5.55	8.77	12.6	18.49	3.17	5.31	1.25
Merged-chr9-96526194-2	chr9	96525697	96526697	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-47522.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	4.58	1.38	6.47	2.7	1.87	1.61	16.9	8.84	5.62
Merged-chr2-33227477-2	chr2	33226977	33227977	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011923, intron 1 of 4)	L2b|LINE|L2	11516.0	NM_011923	26360.0	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	6.86	4.15	1.85	10.8	5.13	3.22	3.17	7.52	3.75
Merged-chr1-37001407-2	chr1	37000902	37001902	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-61875.0	NM_018872	56030.0	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	46.34	47.0	32.37	45.88	27.99	24.92	49.64	30.95	33.1
Merged-chr15-9435938-2	chr15	9435414	9436414	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029341)	promoter-TSS (NM_029341)	-114.0	NM_029341	75568.0	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	2.86	5.07	0.0	4.05	5.13	4.82	3.17	4.86	6.25
Merged-chr3-154328384-1	chr3	154327884	154328884	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010713, exon 2 of 9)	exon (NM_010713, exon 2 of 9)	2176.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	1.14	1.84	1.85	2.02	1.4	1.61	1.06	0.88	1.25
Merged-chr14-73239037-1	chr14	73238537	73239537	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	1146.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	202.51	258.04	134.12	204.44	193.13	175.23	243.98	302.44	131.15
Merged-chr7-118802846-1	chr7	118802346	118803346	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	52767.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	20.02	25.34	30.52	17.54	16.79	16.08	15.84	22.11	9.99
Merged-chr12-116405995-2	chr12	116405486	116406486	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_028421)	promoter-TSS (NR_028421)	584.0	NM_133762	76044.0	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	33.75	37.32	14.8	37.11	31.72	16.08	35.91	30.51	16.86
Merged-chr5-130000296-1	chr5	129999796	130000796	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357027, intron 2 of 2)	intron (NM_001357027, intron 2 of 2)	2753.0	NM_010368	110006.0	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	72.08	39.17	46.25	105.26	55.98	75.56	53.87	52.62	36.85
Merged-chr10-120287942-1	chr10	120287442	120288442	+	611.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	60882.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	10.3	13.82	11.1	6.75	10.73	8.04	10.56	12.82	12.49
Merged-chr16-24685200-1	chr16	24684700	24685700	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 7 of 12)	(A)n|Simple_repeat|Simple_repeat	-36655.0	NM_001145954	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	6.86	6.45	0.0	6.75	4.67	15.27	6.34	7.07	6.25
Merged-chr11-33986723-1	chr11	33986223	33987223	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155520, intron 4 of 4)	LTR105_Mam|LTR|ERVL	6470.0	NM_001190886	70357.0	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	5.15	3.69	0.0	2.02	0.0	0.0	5.28	2.21	2.5
Merged-chr19-41912507-1	chr19	41912007	41913007	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023418, intron 1 of 3)	CpG	636.0	NM_023418	18648.0	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	129.28	135.01	72.15	130.9	151.15	127.8	98.23	89.32	58.71
Merged-chr12-70783062-1	chr12	70782562	70783562	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42452.0	NM_028127	319710.0	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	4.0	4.15	10.17	4.05	1.87	4.82	1.06	0.88	0.0
Merged-chr9-40762068-1	chr9	40761568	40762568	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 2 of 6)	intron (NM_133733, intron 2 of 6)	-39205.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	68.07	86.17	37.92	53.98	42.92	56.27	9.51	7.52	8.12
Merged-chr2-112262514-1	chr2	112262014	112263014	+	611.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_025403, exon 2 of 2)	3' UTR (NM_025403, exon 2 of 2)	588.0	NM_025403	66181.0	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	56.06	55.75	44.4	44.53	45.72	40.99	113.01	97.28	51.21
Merged-chr16-36660436-1	chr16	36659936	36660936	+	611.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	B1_Mus1|SINE|Alu	5641.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	15.45	12.44	16.65	13.49	3.73	6.43	9.51	6.63	8.74
Merged-chr18-69663665-2	chr18	69663159	69664159	+	610.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-261900.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	39.47	53.91	29.6	35.76	39.19	45.82	54.92	64.11	21.86
Merged-chr5-137510713-2	chr5	137510224	137511224	+	610.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-8156.0	NM_031408	57330.0	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	98.97	38.25	45.32	96.48	38.25	61.09	72.88	26.09	28.1
Merged-chr16-30262316-1	chr16	30261816	30262816	+	610.799988	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027904, intron 1 of 1)	MIR|SINE|MIR	5216.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	8.58	6.91	1.85	4.05	1.87	0.0	14.79	13.27	2.5
Merged-chr2-118546721-2	chr2	118546229	118547229	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138313, exon 3 of 5)	exon (NM_138313, exon 3 of 5)	870.0	NM_001331221	171543.0	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	45.19	27.65	32.37	38.46	22.86	18.49	45.42	38.91	23.11
Merged-chr4-128884186-2	chr4	128883754	128884754	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178110, exon 1 of 5)	exon (NM_178110, exon 1 of 5)	114.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	13.73	7.83	17.57	15.52	7.93	9.65	4.22	1.77	6.87
Merged-chr1-107503506-1	chr1	107503006	107504006	+	610.75	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-7917.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	3.43	4.61	5.55	2.7	3.73	0.0	8.45	2.65	1.25
Merged-chr2-4487650-2	chr2	4487154	4488154	+	610.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177843, intron 4 of 23)	intron (NM_001177843, intron 4 of 23)	-72100.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.29	4.15	5.55	4.72	2.33	14.47	8.45	7.07	2.5
Merged-chr14-121865357-3	chr14	121864841	121865841	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12929.0	NR_131002	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	6.29	3.23	1.85	3.37	3.73	1.61	0.0	0.88	2.5
Merged-chr15-76251116-3	chr15	76250621	76251621	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	2930.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	60.64	54.83	72.15	46.56	37.32	39.39	81.33	91.97	52.46
Merged-chr13-37893816-1	chr13	37893316	37894316	+	610.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033615, exon 4 of 10)	non-coding (NR_033615, exon 4 of 10)	4945.0	NM_001177869	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	17.16	18.89	11.1	30.36	18.19	28.13	16.9	16.8	17.49
Merged-chr11-76647743-3	chr11	76647240	76648240	+	610.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24730.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	9.72	3.69	0.92	8.77	2.8	1.61	5.28	2.21	2.5
Merged-chr11-49986393-2	chr11	49985888	49986888	+	610.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-38943.0	NM_021540	59044.0	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	14.87	8.29	0.0	8.77	4.2	1.61	7.39	3.1	3.75
Merged-chr15-86137859-1	chr15	86137359	86138359	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001205353)	TTS (NM_001205353)	-47869.0	NR_155352	102638208.0	Mm.415090	NR_155352	ENSMUSG00000086424	Gm15569	-	predicted gene 15569	ncRNA	5.15	3.23	1.85	6.75	0.47	6.43	2.11	0.88	5.0
Merged-chr1-138328026-1	chr1	138327526	138328526	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54288.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	30.32	41.01	38.85	45.21	35.45	46.62	73.93	55.27	38.72
Merged-chr12-95741514-1	chr12	95741014	95742014	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	49288.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	4.58	0.46	3.7	4.72	2.8	4.82	2.11	5.31	1.25
Merged-chr7-128000824-2	chr7	128000326	128001326	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-3552.0	NM_001079932	434246.0	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	10.3	9.68	7.4	10.12	11.2	1.61	10.56	6.63	4.37
Merged-chr11-34060183-3	chr11	34059682	34060682	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010696, intron 3 of 20)	intron (NM_010696, intron 3 of 20)	13254.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	49.77	52.07	54.57	36.43	23.33	49.03	55.98	41.12	39.97
Merged-chr3-52924035-2	chr3	52923537	52924537	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040555, intron 2 of 4)	intron (NR_040555, intron 2 of 4)	3629.0	NR_040555	622124.0	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	7.44	1.84	9.25	1.35	3.73	3.22	1.06	0.88	6.25
Merged-chr9-103228557-1	chr9	103228057	103229057	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133977, intron 1 of 16)	intron (NM_133977, intron 1 of 16)	1729.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	18.88	11.98	12.95	24.96	14.93	19.29	11.62	5.31	13.74
Merged-chr13-99184336-2	chr13	99183805	99184805	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001004149)	promoter-TSS (NM_001004149)	-518.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	33.75	44.7	33.3	47.23	39.65	24.11	52.81	50.85	26.85
Merged-chr15-101333913-1	chr15	101333413	101334413	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-35439.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	9.72	10.14	0.0	15.52	5.6	9.65	12.67	9.29	9.99
Merged-chr14-63077332-2	chr14	63076833	63077833	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	22260.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	151.59	143.3	107.29	172.73	126.89	139.06	174.27	137.07	71.82
Merged-chr1-189701225-1	chr1	189700725	189701725	+	610.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13139.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.57	3.69	0.0	1.35	0.93	0.8	4.22	0.0	6.25
Merged-chr16-42169952-1	chr16	42169452	42170452	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	133517.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	3.43	4.61	3.7	1.35	2.8	0.0	1.06	1.33	6.25
Merged-chr11-69323216-2	chr11	69322734	69323734	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001024206)	promoter-TSS (NM_001024206)	639.0	NM_172560	216846.0	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	126.42	103.22	74.92	136.29	89.1	71.54	104.56	115.85	54.96
Merged-chr9-62373953-2	chr9	62373449	62374449	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009672, intron 4 of 6)	intron (NM_009672, intron 4 of 6)	32606.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	38.33	39.17	27.75	29.69	26.59	24.92	19.01	24.76	13.74
Merged-chr1-63111017-1	chr1	63110517	63111517	+	610.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114609, intron 1 of 11)	B3|SINE|B2	3250.0	NM_001081436	227195.0	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584	INO80 complex subunit D	protein-coding	4.0	2.76	12.02	5.4	3.73	3.22	6.34	0.88	0.62
Merged-chr10-121266783-1	chr10	121266283	121267283	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029057, exon 12 of 12)	3' UTR (NM_029057, exon 12 of 12)	44613.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	2.86	4.15	0.0	6.75	8.86	4.82	3.17	2.21	1.25
Merged-chr10-79777192-1	chr10	79776692	79777692	+	610.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031380)	promoter-TSS (NM_031380)	-82.0	NM_031380	83554.0	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.0	0.0	5.55	4.05	0.93	1.61	1.06	2.21	1.25
Merged-chr11-96064652-2	chr11	96064111	96065111	+	610.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172300, intron 1 of 6)	CpG	753.0	NM_172300	268470.0	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	52.63	42.39	69.37	37.78	28.46	61.89	59.15	25.65	36.22
Merged-chr19-10171969-2	chr19	10171474	10172474	+	610.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-10914.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	11.44	8.29	5.55	4.05	7.93	8.04	5.28	3.98	2.5
Merged-chr11-101232361-2	chr11	101231852	101232852	+	610.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5889.0	NM_007970	14055.0	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	36.61	31.33	49.95	35.76	36.39	44.21	31.69	26.09	31.23
Merged-chr3-100568700-3	chr3	100568173	100569173	+	610.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010763, intron 12 of 12)	intron (NM_010763, intron 12 of 12)	-79481.0	NM_001142952	74645.0	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	2.86	4.15	1.85	4.05	4.67	3.22	6.34	1.77	6.25
Merged-chrX-135091299-2	chrX	135090784	135091784	+	610.299988	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-30948.0	NR_040282	320606.0	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA	1.14	1.84	1.85	6.75	3.27	1.61	1.06	1.77	2.5
Merged-chr11-110537807-2	chr11	110537340	110538340	+	610.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	58500.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	50.34	51.15	23.12	44.53	32.66	28.94	51.75	46.87	34.35
Merged-chr11-100369184-2	chr11	100368672	100369672	+	610.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010593, exon 14 of 14)	3' UTR (NM_010593, exon 14 of 14)	-13031.0	NM_010404	15114.0	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	48.62	35.94	48.1	52.63	25.19	36.97	21.12	33.16	22.48
Merged-chr4-3419910-2	chr4	3419415	3420415	+	610.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117175.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	1.14	0.92	0.0	1.35	3.27	1.61	2.11	0.88	2.5
Merged-chr7-35235415-3	chr7	35234894	35235894	+	610.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-20049.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	72.08	78.79	67.52	64.77	34.52	46.62	65.48	55.27	48.09
Merged-chr4-103110169-2	chr4	103109667	103110667	+	610.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	ID_B1|SINE|B4	4132.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	20.59	22.58	31.45	24.96	24.72	18.49	32.74	24.32	31.85
Merged-chr9-62968521-3	chr9	62968024	62969024	+	610.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	Charlie1a|DNA|hAT-Charlie	12355.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	46.91	71.42	28.67	39.13	26.59	21.7	47.53	53.94	21.23
Merged-chr17-10355763-1	chr17	10355263	10356263	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	31161.0	NR_045461	76634.0	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	14.87	6.45	0.0	13.49	9.8	4.02	6.34	3.54	2.5
Merged-chr4-15266607-1	chr4	15266107	15267107	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_181401, exon 1 of 3)	exon (NM_181401, exon 1 of 3)	787.0	NM_181401	100201.0	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	65.79	50.69	43.47	74.22	63.91	64.3	58.09	35.82	25.61
Merged-chr5-21267277-1	chr5	21266777	21267777	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153365, intron 18 of 26)	Lx8|LINE|L1	81010.0	NM_001359877	212167.0	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	4.0	0.92	5.55	0.67	1.4	7.23	0.0	1.77	0.0
Merged-chr15-91651686-1	chr15	91651186	91652186	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21538.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	3.43	1.38	3.7	4.05	2.8	0.8	3.17	7.07	1.25
Merged-chr1-106221062-1	chr1	106220562	106221562	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	49193.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	11.44	12.9	0.0	12.14	8.4	4.82	5.28	6.19	1.25
Merged-chr14-50925685-2	chr14	50925176	50926176	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133676)	promoter-TSS (NM_133676)	727.0	NM_009687	11792.0	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	137.86	156.21	127.64	121.45	135.29	135.04	214.41	274.14	110.54
Merged-chr11-119273532-1	chr11	119273032	119274032	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008064, intron 3 of 19)	MTD|LTR|ERVL-MaLR	5569.0	NM_008064	14387.0	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	7.44	6.91	9.25	4.72	2.33	3.22	4.22	3.1	2.5
Merged-chr4-121010568-1	chr4	121010068	121011068	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	6679.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	56.06	46.54	31.45	33.06	23.79	32.96	42.25	55.71	37.47
Merged-chr2-103982421-2	chr2	103981912	103982912	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001142337)	TTS (NM_001142337)	12125.0	NM_001142335	16909.0	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	1.14	2.3	4.62	10.12	3.27	4.82	1.06	3.1	0.0
Merged-chr19-34553148-1	chr19	34552648	34553648	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355262, intron 1 of 2)	intron (NM_001355262, intron 1 of 2)	2060.0	NM_001355262	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	86.95	74.65	89.72	79.62	66.71	74.75	120.41	185.71	84.31
Merged-chr3-81150086-1	chr3	81149586	81150586	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357746, intron 3 of 6)	(TATATG)n|Simple_repeat|Simple_repeat	113670.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	23.45	10.6	7.4	11.47	6.53	4.82	7.39	4.42	6.25
Merged-chr11-75455580-1	chr11	75455080	75456080	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138950)	promoter-TSS (NM_138950)	-863.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	80.09	58.06	55.5	83.66	56.45	73.95	63.37	58.81	57.46
Merged-chr19-5928551-1	chr19	5928051	5929051	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-3735.0	NM_026772	104252.0	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	29.75	19.81	10.17	15.52	10.73	8.84	26.4	13.71	20.61
Merged-chr12-73342349-1	chr12	73341849	73342849	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 10 of 15)	intron (NM_001037717, intron 10 of 15)	55501.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	9.15	12.9	12.95	9.45	22.39	29.74	7.39	9.29	16.24
Merged-chr5-43892573-1	chr5	43892073	43893073	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	23764.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	13.16	13.36	7.4	9.45	6.53	24.92	9.51	5.31	14.36
Merged-chr4-139229356-1	chr4	139228856	139229856	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271405, intron 1 of 8)	intron (NM_001271405, intron 1 of 8)	35245.0	NM_001271405	12345.0	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	26.31	38.25	43.47	48.58	20.99	52.25	51.75	41.12	23.11
Merged-chr2-136916348-1	chr2	136915848	136916848	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	16997.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	9.15	6.91	16.65	8.1	4.67	0.0	12.67	13.27	6.25
Merged-chr1-182954810-1	chr1	182954310	182955310	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_016928)	promoter-TSS (NM_016928)	22.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	49.2	49.3	44.4	16.87	15.39	12.06	11.62	13.71	2.5
Merged-chr1-182554141-1	chr1	182553641	182554641	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10866.0	NM_001145806	170725.0	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	2.29	2.3	0.0	2.7	3.27	1.61	1.06	0.88	1.87
Merged-chr16-38197421-1	chr16	38196921	38197921	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347232, intron 7 of 11)	intron (NM_001347232, intron 7 of 11)	97403.0	NM_010936	18171.0	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	22.31	19.35	6.47	10.8	9.8	11.25	10.56	10.61	6.87
Merged-chr11-83068085-1	chr11	83067585	83068585	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	2973.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	42.33	35.02	21.27	45.88	20.06	42.6	54.92	35.37	47.46
Merged-chr17-3077226-1	chr17	3076726	3077726	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003519, intron 6 of 7)	intron (NR_003519, intron 6 of 7)	6957.0	NR_003519	328734.0	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	12.59	6.91	1.85	11.47	9.33	4.02	2.11	0.44	4.37
Merged-chr7-123082395-1	chr7	123081895	123082895	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-41490.0	NM_144925	233833.0	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.57	2.3	0.0	6.07	4.67	0.8	3.17	5.31	6.25
Merged-chr18-12661336-1	chr18	12660836	12661836	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	17803.0	NM_028341	72747.0	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	5.15	3.23	5.55	8.1	7.0	4.82	9.51	11.5	5.0
Merged-chr2-91925350-1	chr2	91924850	91925850	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007699, intron 1 of 1)	intron (NM_007699, intron 1 of 1)	3161.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.43	0.46	0.0	0.67	0.93	0.0	0.0	1.77	6.25
Merged-chr8-25978060-2	chr8	25977533	25978533	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1289.0	NM_029884	52120.0	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	12.01	26.73	22.2	27.66	33.12	52.25	81.33	74.28	70.57
Merged-chr15-80073088-1	chr15	80072588	80073588	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5491.0	NR_028282	100302601.0		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	56.63	69.58	86.02	94.46	85.37	112.53	70.76	70.75	78.69
Merged-chr11-102409269-1	chr11	102408769	102409769	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-1752.0	NM_026542	68066.0	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	77.8	82.02	50.87	147.09	175.87	165.58	152.09	202.51	93.68
Merged-chr14-17632002-1	chr14	17631502	17632502	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CT-rich|Low_complexity|Low_complexity	-28958.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	6.29	1.84	9.25	2.02	7.93	2.41	4.22	5.75	9.99
Merged-chrX-159910645-1	chrX	159910145	159911145	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135728, intron 4 of 12)	intron (NM_001135728, intron 4 of 12)	-32048.0	NM_001290661	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	21.17	9.22	13.87	25.64	14.93	11.25	14.79	19.9	4.37
Merged-chr15-53128715-1	chr15	53128215	53129215	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	217468.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.58	2.3	1.85	2.7	8.4	4.02	4.22	2.65	5.0
Merged-chr15-91190349-1	chr15	91189849	91190849	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011994, intron 1 of 9)	intron (NM_011994, intron 1 of 9)	1658.0	NM_011994	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	45.19	51.61	48.1	39.13	52.72	29.74	62.31	103.91	43.72
Merged-chr4-48492739-1	chr4	48492239	48493239	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19276.0	NM_001355740	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	2.29	3.23	1.85	3.37	6.53	1.61	6.34	8.4	6.25
Merged-chr10-117436859-1	chr10	117436359	117437359	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10576.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	44.05	59.44	31.45	44.53	54.11	53.85	63.37	76.05	24.36
Merged-chr2-45086378-1	chr2	45085878	45086878	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	23899.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	146.45	155.75	100.82	263.81	209.93	150.31	191.17	278.57	83.06
Merged-chr13-110442439-1	chr13	110441939	110442939	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47395.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.72	2.3	5.55	1.35	5.6	8.84	0.0	3.98	8.12
Merged-chr5-135459760-1	chr5	135459260	135460260	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 2 of 30)	intron (NM_146001, intron 2 of 30)	-65214.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	33.75	24.88	21.27	24.96	23.33	38.58	14.79	29.18	13.74
Merged-chr3-84656383-1	chr3	84655883	84656883	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9809.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	2.29	1.38	1.85	6.07	2.33	3.22	3.17	4.42	6.25
Merged-chr5-125292786-1	chr5	125292286	125293286	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205083, intron 7 of 10)	intron (NM_001205083, intron 7 of 10)	48308.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	45.19	51.61	40.7	38.46	44.32	61.89	51.75	35.37	45.59
Merged-chr8-95131459-1	chr8	95130959	95131959	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145831, intron 3 of 21)	intron (NM_001145831, intron 3 of 21)	11081.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	16.02	6.91	16.65	18.89	20.06	36.97	7.39	5.31	10.62
Merged-chr13-41828795-1	chr13	41828295	41829295	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145875, intron 1 of 6)	intron (NM_001145875, intron 1 of 6)	18693.0	NM_175417	109254.0	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	6.29	3.23	1.85	4.72	3.27	8.04	2.11	3.1	9.99
Merged-chr2-58791918-1	chr2	58791418	58792418	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029692)	TTS (NM_029692)	36734.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.58	1.84	5.55	6.75	3.27	1.61	10.56	3.98	5.62
Merged-chr3-79846777-1	chr3	79846277	79847277	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4115.0	NM_027495	70652.0	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	4.58	3.23	1.85	3.37	0.0	4.02	3.17	1.77	3.12
Merged-chr18-47944864-1	chr18	47944364	47945364	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045404, intron 2 of 3)	intron (NR_045404, intron 2 of 3)	22023.0	NR_045404	414127.0	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	1.14	2.76	3.7	8.77	6.53	7.23	5.28	5.31	5.62
Merged-chr3-121651941-1	chr3	121651441	121652441	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5488.0	NR_036458	100503044.0	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.57	1.38	4.62	4.72	4.2	6.43	3.17	0.88	8.12
Merged-chr4-3508593-1	chr4	3508093	3509093	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28497.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	42.9	65.43	39.77	50.6	22.86	18.49	49.64	66.77	19.36
Merged-chrX-36089055-1	chrX	36088555	36089555	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23053.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	41.76	41.93	17.57	59.38	35.92	27.33	43.3	34.93	29.35
Merged-chr17-25285178-1	chr17	25284678	25285678	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10868.0	NM_011665	22196.0	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	1.72	4.15	11.1	4.05	5.6	2.41	1.06	2.65	1.25
Merged-chr6-53958560-1	chr6	53958060	53959060	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027749, intron 3 of 12)	G-rich|Low_complexity|Low_complexity	20113.0	NM_027749	71287.0	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	1.14	2.76	0.92	2.7	2.8	4.82	1.06	1.77	3.75
Merged-chr2-45096226-1	chr2	45095726	45096726	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149354, exon 3 of 3)	non-coding (NR_149354, exon 3 of 3)	14051.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	24.6	58.06	29.6	45.21	28.92	51.44	33.8	33.16	44.97
Merged-chr19-55835007-1	chr19	55834507	55835507	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-60314.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	20.02	13.36	24.05	13.49	5.6	18.49	9.51	4.42	8.74
Merged-chr13-60748557-1	chr13	60748057	60749057	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 20 of 26)	intron (NM_134062, intron 20 of 26)	37807.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	7.44	5.07	0.0	1.35	3.73	12.86	3.17	2.21	3.12
Merged-chr9-32544897-1	chr9	32544397	32545397	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3445.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	14.3	6.91	2.77	15.52	8.4	8.84	15.84	3.1	6.25
Merged-chr4-33250491-1	chr4	33249991	33250991	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1704.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	37.18	58.06	87.87	18.22	23.33	35.37	25.35	36.7	27.48
Merged-chr15-64301491-1	chr15	64300991	64301991	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 3 of 28)	intron (NM_001276461, intron 3 of 28)	11182.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	19.45	14.75	20.35	16.19	13.06	16.08	13.73	22.55	18.74
Merged-chr19-47338039-1	chr19	47337539	47338539	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008018, intron 6 of 14)	intron (NM_008018, intron 6 of 14)	-64450.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	7.44	0.92	1.85	0.67	2.33	1.61	8.45	1.77	6.25
Merged-chr13-49201960-1	chr13	49201460	49202460	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026738)	TTS (NM_026738)	14066.0	NM_026738	68480.0	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	96.68	91.24	50.87	134.94	126.89	113.33	109.84	114.08	60.58
Merged-chr11-5008154-1	chr11	5007654	5008654	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243044, intron 1 of 21)	intron (NM_001243044, intron 1 of 21)	21330.0	NM_001355660	11764.0	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	13.73	14.75	11.1	16.19	14.93	26.53	5.28	6.19	5.0
Merged-chr11-84813929-1	chr11	84813429	84814429	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_145433, exon 5 of 5)	3' UTR (NM_145433, exon 5 of 5)	5586.0	NM_145433	217038.0	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	3.43	2.76	1.85	3.37	0.47	0.0	2.11	0.44	3.75
Merged-chr1-88263614-1	chr1	88263114	88264114	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040291, exon 5 of 5)	non-coding (NR_040291, exon 5 of 5)	5794.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	18.31	15.67	23.12	12.14	13.06	17.68	24.29	11.94	43.09
Merged-chrX-93689159-1	chrX	93688659	93689659	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_211138, intron 1 of 7)	Charlie7|DNA|hAT-Charlie	14047.0	NM_211138	236899.0	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	25.17	22.12	16.65	39.13	28.46	24.11	22.18	21.67	14.36
Merged-chr7-84606608-1	chr7	84606108	84607108	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010176)	promoter-TSS (NM_010176)	-666.0	NM_010176	14085.0	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	swst	fumarylacetoacetate hydrolase	protein-coding	2.86	7.83	0.0	3.37	3.73	4.02	3.17	1.33	0.0
Merged-chr5-150107716-1	chr5	150107216	150108216	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89041.0	NM_001289566	140498.0	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	2.86	2.76	3.7	5.4	2.33	3.22	2.11	1.33	7.49
Merged-chr10-37081709-1	chr10	37081209	37082209	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	57217.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	3.43	2.3	1.85	6.07	2.33	6.43	3.17	1.33	1.25
Merged-chr15-63614666-1	chr15	63614166	63615166	+	610.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-135058.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	31.46	48.38	59.2	41.16	48.05	69.13	61.26	67.65	23.73
Merged-chr4-59529469-1	chr4	59528969	59529969	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178164, intron 1 of 13)	(CA)n|Simple_repeat|Simple_repeat	19895.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	17.73	11.52	20.35	19.57	10.73	22.51	23.24	7.96	2.5
Merged-chr10-108446298-1	chr10	108445798	108446798	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	114109.0	NM_054056	114774.0	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	2.86	5.07	5.55	6.75	1.87	1.61	2.11	0.88	2.5
Merged-chr2-119296999-1	chr2	119296499	119297499	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172269, exon 5 of 5)	exon (NM_172269, exon 5 of 5)	8257.0	NM_172269	228545.0	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	2.29	2.3	0.0	6.75	2.8	4.82	3.17	1.77	1.25
Merged-chr8-70729432-1	chr8	70728932	70729932	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201607, intron 3 of 16)	intron (NM_201607, intron 3 of 16)	5368.0	NM_201607	110385.0	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	9.72	1.84	0.0	3.37	1.4	6.43	1.06	0.88	1.25
Merged-chr9-74142074-1	chr9	74141574	74142574	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033500, intron 3 of 19)	MER20|DNA|hAT-Charlie	31740.0	NM_001033500	546144.0	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	4.0	4.61	0.0	2.02	1.87	3.22	4.22	3.54	5.0
Merged-chr11-110611046-1	chr11	110610546	110611546	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	131706.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	5.15	4.15	0.0	5.4	10.73	4.82	3.17	3.98	7.49
Merged-chr4-134129662-2	chr4	134129161	134130161	+	610.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_080559)	promoter-TSS (NM_080559)	-908.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	15.45	15.67	6.47	14.17	16.33	32.96	45.42	53.06	29.35
Merged-chr9-14751610-1	chr9	14751110	14752110	+	610.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010242, exon 1 of 1)	exon (NM_010242, exon 1 of 1)	512.0	NM_010242	14345.0	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	14.3	11.06	14.8	20.92	17.73	20.9	20.07	15.92	8.12
Merged-chr5-121009665-2	chr5	121009156	121010156	+	609.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011286)	promoter-TSS (NM_011286)	-118.0	NM_011286	19894.0	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	6.29	1.84	3.7	2.02	0.0	3.22	5.28	3.54	0.0
Merged-chr10-112060136-2	chr10	112059632	112060632	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027018)	promoter-TSS (NM_027018)	-57.0	NM_027018	69286.0	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	3.43	0.92	1.85	1.35	2.33	0.0	4.22	1.77	1.25
Merged-chr1-33684667-2	chr1	33684155	33685155	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14831.0	NR_033199	67503.0	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	2.86	2.76	0.0	1.35	5.6	1.61	3.17	0.88	2.5
Merged-chr3-89331009-2	chr3	89330498	89331498	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7030.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	5.72	3.69	3.7	1.35	2.33	1.61	3.17	2.21	3.12
Merged-chr8-122940605-1	chr8	122940105	122941105	+	609.75	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	92231.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	100.68	103.22	57.35	70.85	62.05	42.6	44.36	48.64	32.48
Merged-chr8-25100402-2	chr8	25099984	25100984	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031257, intron 1 of 11)	intron (NM_031257, intron 1 of 11)	1327.0	NM_031257	83436.0	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	69.22	80.64	77.7	63.42	59.71	81.99	78.16	68.98	49.96
Merged-chr15-84245985-2	chr15	84245475	84246475	+	609.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133167, intron 1 of 12)	L1MB8|LINE|L1	13932.0	NM_133167	170736.0	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	107.55	142.38	69.37	70.17	82.11	113.33	157.37	151.22	104.3
Merged-chr17-71553128-2	chr17	71552628	71553628	+	609.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029254, intron 1 of 6)	RMER15|LTR|ERVL	1067.0	NM_029254	70891.0	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	3.43	5.53	0.0	3.37	5.13	3.22	7.39	1.77	5.0
Merged-chr13-113544883-1	chr13	113544383	113545383	+	609.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR52|LTR|ERVL	-42039.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.15	5.07	0.0	6.07	4.2	8.04	8.45	7.07	3.75
Merged-chr2-143962347-1	chr2	143961847	143962847	+	609.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024281, intron 10 of 23)	intron (NM_024281, intron 10 of 23)	47016.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	10.3	5.99	14.8	1.35	4.2	9.65	2.11	4.86	10.62
Merged-chr6-134790197-1	chr6	134789697	134790697	+	609.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130447, intron 1 of 6)	intron (NM_130447, intron 1 of 6)	-2163.0	NR_151454	105242798.0	Mm.398227	NR_151454		1700055D16Rik	-	RIKEN cDNA 1700055D16 gene	ncRNA	17.73	17.05	12.95	14.84	10.73	28.94	34.85	32.28	17.49
Merged-chr3-126599610-3	chr3	126599123	126600123	+	609.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	2672.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	22.88	24.42	17.57	20.92	23.33	20.9	30.63	15.03	8.74
Merged-chr10-80679747-1	chr10	80679247	80680247	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3454.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	90.96	98.61	113.77	134.94	134.82	120.57	175.33	178.19	66.2
Merged-chr1-192736157-2	chr1	192735654	192736654	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	35065.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.15	5.07	5.55	4.05	5.13	8.04	2.11	3.98	7.49
Merged-chr13-77166233-1	chr13	77165733	77166733	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081353, intron 1 of 3)	MER21C|LTR|ERVL	30697.0	NM_001145676	72371.0	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	6.86	14.28	14.8	8.77	3.73	11.25	4.22	6.19	0.0
Merged-chr3-108186206-1	chr3	108185706	108186706	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001287093)	promoter-TSS (NM_001287093)	-83.0	NM_001287093	229715.0	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	5.15	5.99	6.47	6.75	0.0	16.88	11.62	3.1	4.37
Merged-chr19-56817956-1	chr19	56817456	56818456	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4273.0	NM_170757	213993.0	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	8.01	7.83	11.1	10.8	8.86	8.04	8.45	10.61	9.99
Merged-chr8-14846239-1	chr8	14845739	14846739	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172910, intron 15 of 15)	intron (NM_172910, intron 15 of 15)	-42297.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	4.58	5.53	16.65	4.05	2.33	12.86	9.51	18.13	5.0
Merged-chr5-20938548-1	chr5	20938048	20939048	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001080977, intron 1 of 7)	intron (NM_001080977, intron 1 of 7)	-12441.0	NR_030699	320770.0	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	32.04	19.35	37.92	15.52	5.6	12.06	41.19	32.28	23.11
Merged-chr2-28479377-1	chr2	28478877	28479877	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17B|LTR|ERVK	11311.0	NM_001166031	118451.0	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	9.15	9.68	6.47	20.92	33.59	26.53	8.45	12.38	12.49
Merged-chr8-95136056-2	chr8	95135546	95136546	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010631, intron 2 of 19)	(TTTTG)n|Simple_repeat|Simple_repeat	6494.0	NM_010631	16582.0	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	13.73	10.14	11.1	6.07	3.27	11.25	14.79	11.94	8.74
Merged-chr11-108224788-2	chr11	108224301	108225301	+	609.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	119087.0	NM_011101	18750.0	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	26.31	28.11	25.9	10.12	11.2	8.04	26.4	24.76	7.49
Merged-chr8-72217702-1	chr8	72217202	72218202	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-2028.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	4.0	1.38	2.77	4.72	6.06	3.22	2.11	1.77	5.62
Merged-chr2-147178969-1	chr2	147178469	147179469	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5114.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	4.0	2.76	7.4	0.67	0.93	3.22	2.11	1.33	2.5
Merged-chr18-88798696-1	chr18	88798196	88799196	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	95511.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	4.58	3.23	0.0	4.05	3.27	1.61	5.28	1.33	6.25
Merged-chr8-88692154-1	chr8	88691654	88692654	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	3.43	3.23	3.7	6.75	3.27	4.82	7.39	2.21	2.5
Merged-chr7-129766631-1	chr7	129766131	129767131	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174768.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	3.43	1.84	5.55	4.72	3.27	0.0	3.17	0.0	6.25
Merged-chr6-145196725-1	chr6	145196225	145197225	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177222, intron 6 of 15)	intron (NM_177222, intron 6 of 15)	14245.0	NM_177222	320662.0	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	5.15	0.46	3.7	6.07	6.06	1.61	1.06	2.65	1.25
Merged-chr2-151973052-1	chr2	151972552	151973552	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146127, intron 1 of 1)	intron (NM_146127, intron 1 of 1)	342.0	NM_001289151	73847.0	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	41.76	25.34	11.1	43.18	20.06	19.29	35.91	17.69	9.99
Merged-chr1-135789969-1	chr1	135789469	135790469	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9452.0	NM_021467	21952.0	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	5.72	1.84	0.0	0.67	2.8	0.0	5.28	2.65	8.12
Merged-chr10-121693257-1	chr10	121692757	121693757	+	609.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177335, exon 13 of 13)	3' UTR (NM_177335, exon 13 of 13)	-46673.0	NM_001359720	270802.0	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	2.86	5.99	1.85	6.75	13.06	14.47	5.28	5.31	5.0
Merged-chr13-102694303-1	chr13	102693803	102694803	+	609.400024	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360519, intron 1 of 2)	intron (NM_001360519, intron 1 of 2)	745.0	NM_008533	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	267.15	276.47	209.04	277.98	161.88	183.26	327.42	416.96	170.5
Merged-chr3-79592220-2	chr3	79591690	79592690	+	609.375	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356326, intron 1 of 10)	URR1A|DNA|hAT-Charlie	853.0	NM_026352	67738.0	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	53.77	63.59	53.65	75.57	83.04	40.19	84.49	78.26	39.97
Merged-chr11-76997451-1	chr11	76996951	76997951	+	609.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1146.0	NM_010484	15567.0	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.0	3.69	2.77	1.35	5.13	0.0	4.22	0.0	3.12
Merged-chr10-80506404-3	chr10	80505910	80506910	+	609.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139226, intron 1 of 1)	intron (NM_139226, intron 1 of 1)	11504.0	NM_139226	246086.0	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	3.43	2.76	7.4	5.4	0.47	1.61	1.06	1.77	0.0
Merged-chr2-165968403-1	chr2	165967903	165968903	+	609.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24234.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	206.51	135.01	134.12	214.56	117.56	159.95	172.16	129.55	89.93
Merged-chr7-142894836-2	chr7	142894346	142895346	+	609.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009377, intron 9 of 12)	intron (NM_009377, intron 9 of 12)	5120.0	NM_009377	21823.0	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	2.29	2.76	6.47	0.67	5.13	3.22	3.17	0.0	1.25
Merged-chr6-82991581-2	chr6	82991086	82992086	+	609.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033079, intron 4 of 9)	intron (NM_033079, intron 4 of 9)	41885.0	NM_010070	13448.0	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	57.78	41.93	15.72	49.93	61.58	36.97	33.8	28.74	13.12
Merged-chr10-44470522-2	chr10	44470025	44471025	+	609.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11777.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.58	2.3	1.85	4.05	3.73	0.0	5.28	3.54	3.12
Merged-chr7-127289487-2	chr7	127288979	127289979	+	609.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6781.0	NM_001253873	16408.0	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	60.07	47.92	51.8	64.1	24.72	56.27	61.26	45.54	49.34
Merged-chr14-70107609-3	chr14	70107100	70108100	+	609.083313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021328, intron 1 of 8)	intron (NM_021328, intron 1 of 8)	7507.0	NM_001360404	57784.0	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	35.47	59.44	42.55	41.83	41.05	63.5	69.71	66.33	68.7
Merged-chr4-108067443-1	chr4	108066943	108067943	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011327, intron 12 of 15)	intron (NM_011327, intron 12 of 15)	-19914.0	NR_105823	102465213.0		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	29.75	36.4	28.67	21.59	28.92	12.06	42.25	44.66	34.35
Merged-chr7-101653979-1	chr7	101653479	101654479	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9789.0	NM_009191	20480.0	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	13.73	11.06	3.7	6.07	4.2	14.47	3.17	4.42	2.5
Merged-chr3-59312141-1	chr3	59311641	59312641	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 42 of 43)	intron (NM_177855, intron 42 of 43)	32115.0	NM_001162884	242050.0	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	25.74	41.47	35.15	85.01	133.89	67.52	28.52	30.95	5.0
Merged-chr9-3405733-1	chr9	3405233	3406233	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027545, intron 1 of 17)	Lx2B|LINE|L1	1648.0	NM_027545	244672.0	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	5.72	5.99	11.1	1.35	4.2	6.43	3.17	4.42	3.75
Merged-chr8-39639214-1	chr8	39638714	39639714	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	3464.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	26.89	57.14	50.87	52.63	46.18	49.03	89.78	91.97	28.1
Merged-chr7-14513765-1	chr7	14513265	14514265	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-20839.0	NM_001184981	638251.0	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0.57	3.23	0.92	8.1	4.2	7.23	4.22	6.63	3.75
Merged-chr7-16396146-1	chr7	16395646	16396646	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5050.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	7.44	4.61	3.7	6.07	1.4	3.22	4.22	0.0	7.49
Merged-chr8-70644232-1	chr8	70643732	70644732	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-11776.0	NM_001330687	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	48.05	32.25	9.25	5.4	3.27	0.0	14.79	11.5	6.25
Merged-chr10-95261326-1	chr10	95260826	95261826	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	62383.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	66.36	59.9	28.67	72.87	41.05	53.85	108.79	90.64	43.09
Merged-chr13-23580331-1	chr13	23579831	23580831	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-1271.0	NM_175654	319156.0	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	14.3	4.61	7.4	11.47	6.53	4.82	6.34	6.63	7.49
Merged-chr2-6279281-1	chr2	6278781	6279781	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-43476.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	8.58	4.15	3.7	9.45	7.93	15.27	2.11	7.52	3.75
Merged-chr5-63969713-1	chr5	63969213	63970213	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_145923)	promoter-TSS (NM_145923)	-816.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	38.33	35.48	40.7	46.56	23.33	34.56	59.15	47.75	51.21
Merged-chr4-53823823-1	chr4	53823323	53824323	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2222.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.14	1.38	1.85	8.77	4.2	8.04	9.51	1.77	6.25
Merged-chr3-153725099-1	chr3	153724599	153725599	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011372)	promoter-TSS (NM_011372)	34.0	NM_011372	20447.0	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.57	0.92	3.7	4.72	1.87	0.0	2.11	0.44	3.75
Merged-chr7-79371616-1	chr7	79371116	79372116	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15411.0	NM_020599	19771.0	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.57	2.76	1.85	2.7	0.0	1.61	3.17	0.44	3.75
Merged-chr3-52112465-1	chr3	52111965	52112965	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7459.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	1.72	2.3	2.77	3.37	3.27	4.82	5.28	1.77	5.0
Merged-chr17-84430616-1	chr17	84430116	84431116	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183021, intron 17 of 37)	L1MB8|LINE|L1	35592.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	6.29	6.45	14.8	6.07	7.46	5.63	10.56	9.29	8.74
Merged-chr14-63967718-1	chr14	63967218	63968218	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20062.0	NM_026359	67750.0	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	4.58	1.84	9.25	0.67	0.47	1.61	3.17	0.88	6.87
Merged-chr4-39616663-1	chr4	39616163	39617163	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	166370.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	6.86	3.23	5.55	3.37	1.87	1.61	8.45	4.86	9.99
Merged-chr9-55429416-2	chr9	55428903	55429903	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172923, intron 8 of 10)	intron (NM_172923, intron 8 of 10)	82840.0	NM_145615	110842.0	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.0	1.38	3.7	4.72	0.93	0.0	2.11	1.33	2.5
Merged-chr7-98294375-1	chr7	98293875	98294875	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360615, intron 1 of 10)	L1ME2z|LINE|L1	15167.0	NM_001360616	66190.0	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca|aPHC	alkaline ceramidase 3	protein-coding	26.31	37.78	31.45	20.92	18.66	30.54	20.07	15.48	11.24
Merged-chr7-101374288-1	chr7	101373788	101374788	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040111, intron 3 of 33)	intron (NM_001040111, intron 3 of 33)	-3834.0	NM_001040112	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	10.3	8.75	20.35	12.14	4.67	16.08	4.22	3.98	15.61
Merged-chr5-117127275-1	chr5	117126775	117127775	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199685, intron 1 of 20)	intron (NM_001199685, intron 1 of 20)	-6313.0	NM_001081308	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	3.43	2.76	7.4	1.35	3.73	1.61	0.0	0.44	1.87
Merged-chr15-102506614-1	chr15	102506114	102507114	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009582, intron 1 of 13)	B1F|SINE|Alu	4086.0	NM_001358844	26404.0	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	2.86	5.99	5.55	6.75	6.06	12.86	6.34	5.31	5.0
Merged-chr2-128780441-1	chr2	128779941	128780941	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 13 of 18)	intron (NM_008587, intron 13 of 18)	-37862.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	15.45	10.6	21.27	14.17	10.26	31.35	11.62	12.38	16.24
Merged-chr13-46961968-1	chr13	46961468	46962468	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-32250.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	4.0	4.61	1.85	4.72	2.33	3.22	5.28	3.1	7.49
Merged-chr5-88689756-1	chr5	88689256	88690256	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-13585.0	NM_178700	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	4.0	5.99	0.92	5.4	5.6	4.82	1.06	3.54	0.0
Merged-chr10-117837626-2	chr10	117837114	117838114	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B3A|SINE|B2	8360.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	44.62	56.22	54.57	43.86	45.25	40.99	66.54	59.69	34.97
Merged-chr4-121040702-1	chr4	121040202	121041202	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007741, intron 1 of 31)	MIR|SINE|MIR	1136.0	NM_007741	12840.0	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	7.44	6.91	0.0	8.1	0.93	3.22	9.51	1.77	5.0
Merged-chr19-5798215-1	chr19	5797715	5798715	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_002847, exon 1 of 1)	non-coding (NR_002847, exon 1 of 1)	-2234.0	NR_144621	109146451.0		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	118.99	56.22	37.0	89.06	31.72	17.68	73.93	42.01	31.23
Merged-chrX-103565538-1	chrX	103565038	103566038	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028381, intron 9 of 10)	L1_Mus3|LINE|L1	7458.0	NR_030558	100124494.0		NR_030558	ENSMUSG00000065509	Mir421	Mirn421|mmu-mir-421	microRNA 421	ncRNA	8.58	13.36	7.4	4.05	8.4	14.47	7.39	11.5	6.25
Merged-chr5-140536804-2	chr5	140536286	140537286	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28281.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	5.72	3.69	0.92	3.37	3.27	4.82	4.22	0.88	1.25
Merged-chr15-66101676-1	chr15	66101176	66102176	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-124872.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	4.58	6.45	3.7	3.37	2.33	6.43	3.17	3.1	1.87
Merged-chr3-148770557-1	chr3	148770057	148771057	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	184078.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	1.14	4.61	1.85	5.4	0.93	6.43	8.45	2.21	6.25
Merged-chr11-69443478-1	chr11	69442978	69443978	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081330, intron 63 of 85)	intron (NM_001081330, intron 63 of 85)	-29803.0	NM_001017426	216850.0	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	13.16	0.92	6.47	1.35	3.27	3.22	7.39	3.54	4.37
Merged-chr10-22307831-1	chr10	22307331	22308331	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015465, intron 2 of 2)	intron (NR_015465, intron 2 of 2)	1111.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	137.86	121.65	76.77	134.27	78.37	81.18	24.29	23.88	18.11
Merged-chr12-73678167-1	chr12	73677667	73678667	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008856, intron 2 of 13)	intron (NM_008856, intron 2 of 13)	93371.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	6.86	11.98	1.85	10.12	7.0	12.06	10.56	3.98	5.62
Merged-chr4-89124104-1	chr4	89123604	89124604	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151607, intron 1 of 3)	intron (NR_151607, intron 1 of 3)	4122.0	NR_151607	102637941.0	Mm.366358	NR_151607		Gm12602	-	predicted gene 12602	ncRNA	6.86	1.84	3.7	5.4	5.6	0.8	2.11	3.1	1.25
Merged-chr7-142534758-1	chr7	142534258	142535258	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011288, intron 1 of 4)	intron (NM_011288, intron 1 of 4)	1641.0	NM_011288	19935.0	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	7.44	7.37	7.4	8.1	4.2	4.02	13.73	3.98	3.75
Merged-chr5-110357691-3	chr5	110357154	110358154	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12924.0	NM_001310709	381667.0	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	2.86	3.69	5.55	3.37	0.0	0.8	0.0	1.77	1.25
Merged-chr9-100434056-2	chr9	100433485	100434485	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	52488.0	NM_001033543	213208.0	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	14.87	11.06	18.5	1.35	11.66	20.09	6.34	3.1	21.23
Merged-chr19-47460823-1	chr19	47460323	47461323	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008018, intron 1 of 14)	intron (NM_008018, intron 1 of 14)	3588.0	NM_001164717	14218.0	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	15.45	6.45	9.25	14.84	15.86	16.08	3.17	4.42	9.37
Merged-chr4-32351513-1	chr4	32351013	32352013	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65922.0	NM_001109661	12014.0	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	13.73	7.37	0.92	35.76	19.59	11.25	7.39	6.19	9.37
Merged-chr17-48317237-1	chr17	48316737	48317737	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 2 of 5)	URR1A|DNA|hAT-Charlie	1075.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	56.63	83.86	65.67	66.8	76.51	119.76	116.18	101.7	80.56
Merged-chr2-167759729-1	chr2	167759229	167760229	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	68552.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	253.42	190.76	152.62	280.68	172.61	197.73	212.29	210.91	137.4
Merged-chr9-99416950-1	chr9	99416450	99417450	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008624, intron 1 of 5)	intron (NM_008624, intron 1 of 5)	19762.0	NM_008624	17532.0	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	2.86	4.15	3.7	5.4	0.0	2.41	1.06	2.21	2.5
Merged-chr7-52005865-1	chr7	52005365	52006365	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027704)	promoter-TSS (NR_027704)	-151.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	4.58	1.84	3.7	4.05	1.87	4.82	2.11	0.0	1.25
Merged-chr2-58932059-1	chr2	58931559	58932559	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	intron (NM_001362394, intron 10 of 13)	176875.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	14.87	15.21	3.7	23.62	15.39	19.29	12.67	19.46	11.87
Merged-chr12-34664985-1	chr12	34664485	34665485	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-136096.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	10.87	7.83	9.25	7.42	6.06	8.84	19.01	10.61	8.12
Merged-chr1-134708934-1	chr1	134708434	134709434	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001355726)	promoter-TSS (NM_001355726)	-366.0	NM_001355726	20980.0	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	5.15	1.38	3.7	2.7	1.4	3.22	1.06	1.77	2.5
Merged-chr1-60745783-1	chr1	60745283	60746283	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-605.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	5.72	1.38	0.0	6.07	6.06	7.23	4.22	3.54	0.0
Merged-chr8-84501367-1	chr8	84500867	84501867	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252060, intron 3 of 47)	(CCCCCA)n|Simple_repeat|Simple_repeat	86003.0	NM_001252061	12286.0	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	96.68	74.65	75.85	35.76	24.26	22.51	15.84	15.48	9.37
Merged-chr8-82983343-1	chr8	82982843	82983843	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	119987.0	NM_177378	330812.0	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	9.15	2.76	3.7	6.75	9.8	8.04	4.22	2.21	11.24
Merged-chr9-118691516-1	chr9	118691016	118692016	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 14 of 27)	RMER15|LTR|ERVL	-20176.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	4.58	4.15	12.95	4.05	7.0	19.29	1.06	4.86	10.62
Merged-chr6-97526322-3	chr6	97525807	97526807	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-38487.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	7.44	1.84	1.85	4.72	1.4	0.0	4.22	4.42	2.5
Merged-chr7-36697362-1	chr7	36696862	36697862	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172298)	promoter-TSS (NM_172298)	-756.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	7.44	1.38	5.55	8.1	2.33	13.66	39.08	24.76	26.23
Merged-chr4-136364148-1	chr4	136363648	136364648	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52550.0	NM_001355182	74326.0	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	5.15	4.61	7.4	8.1	3.27	3.22	1.06	3.54	4.37
Merged-chr2-76620416-1	chr2	76619916	76620916	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27578.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.0	2.3	1.85	2.02	1.4	1.61	3.17	4.86	6.25
Merged-chr12-85142944-1	chr12	85142444	85143444	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146244, intron 4 of 10)	intron (NM_146244, intron 4 of 10)	8320.0	NM_146244	238323.0	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	8.58	5.07	3.7	3.37	2.33	1.61	2.11	0.44	0.62
Merged-chr1-173398778-2	chr1	173398285	173399285	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21819.0	NM_001013779	383619.0	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.58	0.46	0.0	4.72	3.73	1.61	6.34	1.33	4.37
Merged-chr5-121267131-2	chr5	121266603	121267603	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 7 of 75)	B1F|SINE|Alu	46884.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	2.29	3.23	0.0	4.72	0.93	3.22	4.22	2.21	3.75
Merged-chr14-58076311-1	chr14	58075811	58076811	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013518, intron 1 of 2)	CpG	3625.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	1.14	0.92	3.7	6.75	2.33	4.82	6.34	0.88	3.75
Merged-chr1-172012199-1	chr1	172011699	172012699	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033509, intron 3 of 7)	intron (NM_033509, intron 3 of 7)	15096.0	NM_033509	93840.0	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	VANGL planar cell polarity 2	protein-coding	3.43	2.3	0.0	4.05	2.33	1.61	4.22	3.1	2.5
Merged-chr15-99284722-1	chr15	99284222	99285222	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081254, intron 2 of 7)	B4A|SINE|B4	2458.0	NM_001081254	545136.0	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	1.72	0.92	1.85	0.67	0.47	3.22	3.17	0.44	3.75
Merged-chr3-132071073-1	chr3	132070573	132071573	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14219.0	NM_020265	56811.0	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	3.43	4.15	3.7	3.37	3.73	9.65	3.17	1.77	3.75
Merged-chr7-133744388-2	chr7	133743887	133744887	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357685, intron 3 of 11)	intron (NM_001357685, intron 3 of 11)	15882.0	NM_001286030	101437.0	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	25.74	33.64	23.12	39.13	34.06	57.07	46.47	50.41	53.08
Merged-chr7-46712439-1	chr7	46711939	46712939	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011315, intron 3 of 3)	intron (NM_011315, intron 3 of 3)	-1788.0	NM_030233	78935.0	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	5.72	1.84	0.0	0.67	2.33	1.61	1.06	2.65	3.75
Merged-chr15-12092280-1	chr15	12091780	12092780	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-25571.0	NM_011767	22763.0	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	2.29	2.3	0.0	1.35	1.4	0.0	1.06	1.77	0.0
Merged-chr11-96849845-3	chr11	96849324	96850324	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019877)	promoter-TSS (NM_019877)	-52.0	NM_019877	56358.0	Mm.22144	NM_019877	ENSMUSG00000018672	Copz2	1110012D12Rik|zeta2-COP	coatomer protein complex, subunit zeta 2	protein-coding	6.86	1.38	12.02	10.12	4.67	3.22	11.62	2.21	3.75
Merged-chr1-86486954-1	chr1	86486454	86487454	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39603.0	NR_153834	19231.0	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	36.61	43.77	43.47	55.33	48.52	55.46	55.98	64.11	49.34
Merged-chr4-6386857-1	chr4	6386357	6387357	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 6 of 8)	intron (NM_001098227, intron 6 of 8)	21177.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	6.86	11.52	8.32	6.07	8.86	20.9	17.96	5.31	12.49
Merged-chr3-138506831-1	chr3	138506331	138507331	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17449.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	4.0	0.92	12.95	3.37	1.87	3.22	0.0	2.65	7.49
Merged-chr6-122740130-1	chr6	122739630	122740630	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011401, intron 2 of 9)	intron (NM_011401, intron 2 of 9)	2615.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	3.43	4.15	0.0	5.4	3.73	4.02	2.11	2.21	0.0
Merged-chr16-42934980-1	chr16	42934480	42935480	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285805, intron 1 of 10)	L1MB1|LINE|L1	-20600.0	NR_002445	170658.0	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	2.86	4.61	1.85	4.05	3.27	0.0	3.17	2.21	0.0
Merged-chr13-26812273-1	chr13	26811773	26812773	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42108.0	NM_008232	15192.0	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.57	3.23	1.85	1.35	3.27	0.8	5.28	1.77	7.49
Merged-chr17-26779597-1	chr17	26779097	26780097	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1482.0	NM_172149	224630.0	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	10.3	6.91	1.85	10.12	7.0	12.06	14.79	3.54	16.86
Merged-chr2-166076014-1	chr2	166075514	166076514	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252579, intron 18 of 20)	intron (NM_001252579, intron 18 of 20)	79271.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	5.15	0.46	0.0	4.72	3.27	4.82	2.11	2.21	1.25
Merged-chr13-51956043-1	chr13	51955543	51956543	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109368.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	6.86	3.69	14.8	4.05	5.13	3.22	8.45	3.54	3.75
Merged-chr17-28525085-1	chr17	28524585	28525585	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-5776.0	NM_026290	67645.0	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	7.44	7.37	16.65	4.72	7.46	8.04	4.22	1.77	4.37
Merged-chr9-107708180-1	chr9	107707680	107708680	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011349, intron 1 of 17)	intron (NM_011349, intron 1 of 17)	2295.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	6.86	1.84	1.85	2.7	1.87	2.41	4.22	1.77	1.25
Merged-chr2-147307864-1	chr2	147307364	147308364	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030769, exon 5 of 6)	non-coding (NR_030769, exon 5 of 6)	54929.0	NR_040330	99041.0	Mm.373081	NR_040330		AI646519	Aspax1|Peat	expressed sequence AI646519	ncRNA	4.0	3.69	1.85	2.7	1.4	4.82	2.11	2.21	3.12
Merged-chr3-96724994-1	chr3	96724494	96725494	+	609.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028925, intron 2 of 14)	RMER4A|LTR|ERVK	2445.0	NM_028925	74414.0	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	9.15	4.15	11.1	6.07	4.2	4.82	9.51	7.07	6.25
Merged-chr6-134517593-1	chr6	134517093	134518093	+	609.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 3 of 22)	L1M4|LINE|L1	49320.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	8.58	3.23	0.0	10.12	9.8	6.43	21.12	16.36	3.75
Merged-chr7-16287229-1	chr7	16286729	16287729	+	609.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001136471)	promoter-TSS (NM_001136471)	-434.0	NM_001136471	243846.0	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	58.35	63.59	70.3	80.97	59.71	82.79	87.66	105.68	50.59
Merged-chr1-136559962-3	chr1	136559459	136560459	+	608.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-64942.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	55.49	66.35	18.5	29.01	27.52	28.13	55.98	90.2	34.97
Merged-chr7-127774142-2	chr7	127773644	127774644	+	608.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198424, exon 2 of 2)	exon (NM_198424, exon 2 of 2)	-3245.0	NM_178029	233904.0	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	4.0	13.36	3.7	7.42	3.27	8.84	10.56	6.19	12.49
Merged-chr10-117081992-2	chr10	117081477	117082477	+	608.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177798, intron 5 of 9)	(CAAAAA)n|Simple_repeat|Simple_repeat	-18125.0	NM_007636	12461.0	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	30.89	27.19	29.6	24.29	22.39	16.08	46.47	38.03	26.85
Merged-chr11-117344013-1	chr11	117343513	117344513	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113488, intron 1 of 9)	intron (NM_001113488, intron 1 of 9)	11700.0	NM_001113488	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	15.45	5.07	16.65	24.29	14.46	4.82	8.45	8.84	2.5
Merged-chr5-64506348-1	chr5	64505848	64506848	+	608.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29340.0	NR_045413	77382.0	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	34.32	41.01	36.07	33.06	22.86	33.76	46.47	40.68	18.11
Merged-chr1-106712637-1	chr1	106712137	106713137	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177410, exon 1 of 1)	exon (NM_177410, exon 1 of 1)	1653.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	4.0	1.38	3.7	5.4	1.4	3.22	2.11	2.21	0.0
Merged-chr16-4877862-3	chr16	4877360	4878360	+	608.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	1991.0	NM_145359	207740.0	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	104.69	108.28	151.69	78.94	75.57	137.45	154.2	170.23	69.95
Merged-chr3-104644130-3	chr3	104643619	104644619	+	608.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	5455.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	6.86	6.91	2.77	4.72	3.27	0.0	0.0	0.0	1.25
Merged-chr3-37837506-1	chr3	37837006	37838006	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61307.0	NR_040559	626410.0	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	8.01	12.9	4.62	16.19	14.46	19.29	19.01	6.19	16.86
Merged-chr13-5800965-1	chr13	5800465	5801465	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57127.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	14.87	15.67	18.5	14.84	7.0	7.23	12.67	12.38	6.87
Merged-chr2-152294703-1	chr2	152294203	152295203	+	608.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024196, intron 1 of 7)	intron (NM_024196, intron 1 of 7)	831.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	110.41	122.57	52.72	120.77	120.83	49.83	133.08	145.92	35.6
Merged-chr10-21712075-2	chr10	21711547	21712547	+	608.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21202.0	NR_045843	432436.0	Mm.244553	NM_001004162	ENSMUSG00000056716	Gm5420	EG432436	predicted gene 5420	ncRNA	4.58	5.07	0.0	10.8	3.73	4.02	4.22	4.42	1.25
Merged-chr10-95509468-2	chr10	95508996	95509996	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A3_MM|LTR|ERVK	-5666.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	145.3	117.96	92.5	121.45	83.04	133.43	132.02	181.29	122.41
Merged-chr1-37531755-2	chr1	37531243	37532243	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173870, intron 2 of 15)	L1MB8|LINE|L1	4661.0	NM_001290801	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	13.73	10.6	9.25	8.77	5.6	7.23	8.45	9.29	3.75
Merged-chr1-64223327-1	chr1	64222827	64223827	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-101938.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	22.88	29.49	25.9	24.29	15.39	32.15	20.07	16.36	27.48
Merged-chr19-41847626-2	chr19	41847135	41848135	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177603, exon 1 of 1)	exon (NM_177603, exon 1 of 1)	497.0	NM_177603	212398.0	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	40.62	9.68	22.2	41.83	16.33	14.47	42.25	10.17	19.98
Merged-chr2-156530029-1	chr2	156529529	156530529	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001006664, intron 17 of 21)	intron (NM_001006664, intron 17 of 21)	-17547.0	NM_026661	68295.0	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	2.86	1.38	0.0	3.37	2.8	4.02	5.28	2.65	1.25
Merged-chr10-15294382-1	chr10	15293882	15294882	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-497395.0	NR_131087	77538.0	Mm.128235	NR_131087	ENSMUSG00000112227	C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	7.44	12.9	1.85	2.7	5.6	3.22	5.28	2.21	7.49
Merged-chr5-102451219-2	chr5	102450688	102451688	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30203.0	NM_146161	231532.0	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	6.86	7.83	2.77	8.1	6.06	11.25	14.79	12.38	7.49
Merged-chr11-97662341-2	chr11	97661804	97662804	+	608.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1108.0	NM_139311	246198.0	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	85.24	76.95	46.25	59.38	45.25	39.39	90.83	60.58	45.59
Merged-chr5-99336040-2	chr5	99335556	99336556	+	608.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-83129.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	197.93	233.16	110.07	215.91	191.73	176.03	181.66	242.31	109.92
Merged-chr10-81218237-3	chr10	81217720	81218720	+	608.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178662, intron 3 of 12)	intron (NM_178662, intron 3 of 12)	12559.0	NM_178662	16467.0	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	4.58	1.84	1.85	3.37	1.87	3.22	5.28	1.33	0.62
Merged-chr14-26645739-2	chr14	26645240	26646240	+	608.416626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	B3A|SINE|B2	7606.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	20.02	9.68	5.55	8.77	1.4	2.41	7.39	6.19	9.37
Merged-chr11-76457051-2	chr11	76456551	76457551	+	608.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 9 of 21)	intron (NM_001346670, intron 9 of 21)	11414.0	NM_001291186	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	12.59	10.14	12.95	12.14	6.06	11.25	11.62	5.75	9.99
Merged-chr2-129308116-2	chr2	129307629	129308629	+	608.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_040371)	TTS (NR_040371)	1843.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	255.14	306.88	186.84	238.85	164.68	140.66	293.62	313.05	192.35
Merged-chr7-28351955-3	chr7	28351460	28352460	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_028129)	TTS (NR_028129)	420.0	NR_028129	100302567.0		NR_028129		AF357399	MBI-142	snoRNA AF357399	snoRNA	16.59	23.04	13.87	11.47	12.13	4.82	14.79	15.48	18.11
Merged-chr11-75465183-1	chr11	75464683	75465683	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_030711, intron 2 of 2)	intron (NR_030711, intron 2 of 2)	1467.0	NR_029739	387141.0		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	16.59	4.15	12.95	10.12	8.86	14.47	5.28	3.1	6.87
Merged-chr12-4874333-3	chr12	4873832	4874832	+	608.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033488)	promoter-TSS (NM_001033488)	27.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	6.86	2.3	9.25	3.37	2.33	4.82	3.17	2.65	0.0
Merged-chr9-13469477-1	chr9	13468977	13469977	+	608.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38116.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	33.18	26.73	37.0	31.04	28.46	32.96	22.18	12.82	34.97
Merged-chr11-119955197-2	chr11	119954701	119955701	+	608.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037754, intron 1 of 13)	intron (NM_001037754, intron 1 of 13)	12109.0	NM_130862	108100.0	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	68.65	43.77	35.15	52.63	51.78	33.76	39.08	44.66	23.11
Merged-chr7-47013470-2	chr7	47012981	47013981	+	608.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5067.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	30.89	19.35	25.9	33.06	23.79	12.86	40.14	25.2	33.1
Merged-chr2-167061874-4	chr2	167061421	167062421	+	608.125	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033196, intron 1 of 13)	intron (NM_001033196, intron 1 of 13)	-1013.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	117.84	75.57	88.8	112.68	55.05	131.82	198.56	184.38	127.4
Merged-chr18-12144844-1	chr18	12144344	12145344	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024182, intron 7 of 12)	intron (NM_024182, intron 7 of 12)	15994.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	12.01	10.14	14.8	7.42	9.8	10.45	26.4	15.92	8.74
Merged-chr12-28699811-1	chr12	28699311	28700311	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161410, intron 8 of 11)	intron (NM_001161410, intron 8 of 11)	20486.0	NR_105902	102465980.0		NR_105902	ENSMUSG00000098579	Mir6937	Gm27448|mmu-mir-6937	microRNA 6937	ncRNA	5.72	5.99	1.85	4.72	3.27	0.8	4.22	2.65	5.0
Merged-chr11-105967881-1	chr11	105967381	105968381	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207624)	promoter-TSS (NM_207624)	-64.0	NM_001281819	11421.0	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	10.3	1.84	3.7	2.02	0.47	1.61	3.17	1.77	2.5
Merged-chr6-134141892-1	chr6	134141392	134142392	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	106192.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	12.59	15.67	3.7	13.49	7.0	4.82	6.34	6.19	3.12
Merged-chr18-84442598-1	chr18	84442098	84443098	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	146906.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	2.29	0.46	7.4	12.82	4.2	2.41	2.11	5.31	1.25
Merged-chr3-30600453-1	chr3	30599953	30600953	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029690)	promoter-TSS (NM_029690)	-583.0	NM_029690	76652.0	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	39.47	38.25	35.15	41.83	34.99	12.86	53.87	34.93	19.98
Merged-chr11-69516950-1	chr11	69516450	69517450	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081330, intron 8 of 85)	intron (NM_001081330, intron 8 of 85)	32158.0	NM_001081330	327954.0	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	17.16	29.95	23.12	17.54	23.79	26.53	28.52	22.11	21.86
Merged-chr2-93850778-1	chr2	93850278	93851278	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290782)	promoter-TSS (NM_001290782)	-835.0	NM_001290782	329470.0	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	2.29	6.45	5.55	4.05	2.8	5.63	2.11	3.54	9.37
Merged-chr7-99865408-2	chr7	99864912	99865912	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164258, intron 2 of 18)	intron (NM_001164258, intron 2 of 18)	6194.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	6.86	3.69	12.02	11.47	2.8	2.41	4.22	2.65	1.87
Merged-chr7-132658113-1	chr7	132657613	132658613	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	47470.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	9.72	11.52	1.85	13.49	7.46	5.63	5.28	0.88	2.5
Merged-chr6-115774015-1	chr6	115773515	115774515	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025958)	promoter-TSS (NM_025958)	-542.0	NM_025958	67088.0	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	5.15	5.07	1.85	6.75	4.2	1.61	4.22	3.54	1.25
Merged-chr7-141134334-2	chr7	141133839	141134839	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013782, intron 1 of 11)	intron (NM_013782, intron 1 of 11)	3053.0	NM_013782	27388.0	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	2.29	3.23	3.7	8.1	1.87	4.82	2.11	0.88	3.12
Merged-chr18-52760339-1	chr18	52759839	52760839	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER92C|LTR|ERV1	-7472.0	NM_026408	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	1.14	2.3	5.55	2.7	2.8	4.02	2.11	2.21	3.12
Merged-chrY-90738459-1	chrY	90737959	90738959	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	16591.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	1.14	0.92	0.0	2.02	1.4	0.0	10.56	9.29	43.72
Merged-chr1-88005196-2	chr1	88004683	88005683	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033291, intron 2 of 27)	intron (NM_001033291, intron 2 of 27)	3368.0	NM_001198573	227334.0	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	12.59	2.3	8.32	9.45	3.73	9.65	9.51	0.0	9.99
Merged-chr10-30772459-1	chr10	30771959	30772959	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 1 of 14)	intron (NM_001358842, intron 1 of 14)	30867.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	19.45	29.03	12.02	26.31	30.79	36.17	25.35	14.59	9.99
Merged-chr5-143441976-1	chr5	143441476	143442476	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22517.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	4.58	5.99	1.85	6.07	3.73	4.82	2.11	6.19	3.75
Merged-chr2-156306036-1	chr2	156305536	156306536	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172674, intron 17 of 17)	B2_Mm2|SINE|B2	-6437.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	5.15	3.69	5.55	4.72	5.6	0.0	4.22	1.33	3.12
Merged-chr1-64195444-1	chr1	64194944	64195944	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-74055.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	42.9	62.21	45.32	40.48	33.12	49.03	38.02	42.45	36.85
Merged-chr6-29170151-2	chr6	29169648	29170648	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001101443, exon 5 of 5)	exon (NM_001101443, exon 5 of 5)	-5424.0	NM_133925	68272.0	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	2.29	0.92	0.0	4.05	3.27	0.0	1.06	0.88	1.25
Merged-chrX-153666938-1	chrX	153666438	153667438	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	29342.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	10.87	5.99	12.02	7.42	4.67	3.22	10.56	1.77	11.24
Merged-chr6-146633839-1	chr6	146633339	146634339	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026281, intron 1 of 11)	intron (NM_026281, intron 1 of 11)	753.0	NM_026281	67623.0	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	41.76	62.21	43.47	48.58	53.18	45.01	39.08	36.7	26.85
Merged-chr9-15305200-1	chr9	15304700	15305700	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199484, intron 1 of 8)	intron (NM_001199484, intron 1 of 8)	967.0	NM_001199485	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	24.03	30.41	24.97	19.57	19.59	35.37	30.63	21.22	9.37
Merged-chr7-136798802-1	chr7	136798302	136799302	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88198.0	NR_046021	621677.0	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	4.58	0.92	0.0	2.02	1.87	1.61	0.0	0.44	4.37
Merged-chr1-119457379-1	chr1	119456879	119457879	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35131.0	NM_008381	16324.0	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.57	4.15	7.4	9.45	2.8	1.61	5.28	0.0	2.5
Merged-chr19-34724823-2	chr19	34724333	34725333	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	intron (NM_172838, intron 1 of 6)	22278.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	16.02	11.98	10.17	21.59	13.53	21.7	21.12	10.17	17.49
Merged-chr5-31047138-1	chr5	31046638	31047638	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360022, intron 2 of 17)	intron (NM_001360022, intron 2 of 17)	941.0	NM_177870	330064.0	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	19.45	12.44	15.72	15.52	18.19	12.86	14.79	9.29	11.87
Merged-chr10-77880566-1	chr10	77880066	77881066	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287074, intron 9 of 11)	intron (NM_001287074, intron 9 of 11)	-12854.0	NR_015547	75188.0	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	4.0	4.61	7.4	3.37	1.4	3.22	3.17	0.88	5.0
Merged-chr8-90955427-2	chr8	90954943	90955943	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177224, intron 3 of 39)	intron (NM_177224, intron 3 of 39)	23194.0	NM_001310530	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	61.78	88.93	57.35	33.74	21.46	30.54	78.16	73.4	65.58
Merged-chr18-46378246-1	chr18	46377746	46378746	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66318.0	NM_001160399	240261.0	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	6.29	8.29	10.17	16.19	17.26	16.08	13.73	17.24	9.99
Merged-chr7-31127659-1	chr7	31127159	31128159	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011322)	promoter-TSS (NM_011322)	-636.0	NM_011322	20266.0	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	40.04	34.1	20.35	33.06	26.59	31.35	24.29	16.8	12.49
Merged-chr13-15759381-1	chr13	15758881	15759881	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	43249.0	NR_045507	71071.0	Mm.380845	NR_045507	ENSMUSG00000113960	4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	4.0	3.23	0.0	1.35	0.47	1.61	4.22	1.33	1.25
Merged-chr8-70657879-1	chr8	70657379	70658379	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023217, intron 1 of 4)	intron (NM_023217, intron 1 of 4)	1859.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	12.59	10.14	8.32	6.75	2.8	14.47	11.62	7.96	13.74
Merged-chr4-74231233-1	chr4	74230733	74231733	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11264.0	NM_001172095	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	5.15	2.3	1.85	4.05	3.27	4.82	1.06	1.33	5.0
Merged-chr4-133873839-1	chr4	133873339	133874339	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009097, intron 2 of 21)	G-rich|Low_complexity|Low_complexity	892.0	NM_001285506	20111.0	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	100.68	114.27	72.15	76.92	102.17	90.83	62.31	72.96	61.2
Merged-chr4-86667829-1	chr4	86667329	86668329	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	2230.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	35.47	36.86	29.6	51.28	44.32	29.74	40.14	31.84	14.99
Merged-chr10-87906492-1	chr10	87905992	87906992	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111274, intron 2 of 4)	intron (NM_001111274, intron 2 of 4)	45381.0	NM_001111276	16000.0	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	30.32	23.5	24.97	20.92	19.13	24.11	34.85	25.65	14.36
Merged-chrX-155256117-2	chrX	155255643	155256643	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6300.0	NM_001313718	56360.0	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	10.3	15.21	12.02	22.94	12.6	16.88	15.84	9.29	6.25
Merged-chr6-135088044-1	chr6	135087544	135088544	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22382.0	NM_181444	232431.0	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	2.29	3.23	5.55	2.02	1.87	0.8	2.11	0.88	3.12
Merged-chr3-75468431-1	chr3	75467931	75468931	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	88421.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	11.44	5.99	8.32	1.35	6.06	1.61	3.17	4.42	4.37
Merged-chr5-99269911-1	chr5	99269411	99270411	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16984.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	75.51	57.6	66.6	37.11	35.92	38.58	30.63	38.03	26.23
Merged-chr2-163589424-1	chr2	163588924	163589924	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-12890.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	4.58	2.3	0.0	3.37	2.33	0.0	3.17	1.33	3.75
Merged-chr4-102575437-1	chr4	102574937	102575937	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019840, intron 6 of 14)	intron (NM_019840, intron 6 of 14)	5377.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	39.47	38.71	61.05	28.34	22.39	30.54	24.29	28.74	26.23
Merged-chr13-47194939-1	chr13	47194439	47195439	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	936.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	33.18	63.13	37.92	59.38	65.78	73.14	44.36	50.41	26.85
Merged-chr8-14938738-1	chr8	14938238	14939238	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037736, intron 7 of 27)	MTD|LTR|ERVL-MaLR	27075.0	NM_001037736	234094.0	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	2.86	3.23	3.7	0.67	4.2	0.0	3.17	0.88	2.5
Merged-chr14-105898079-1	chr14	105897579	105898579	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1260.0	NM_011897	24064.0	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty RTK signaling antagonist 2	protein-coding	25.74	5.99	20.35	22.27	12.13	10.45	8.45	2.65	4.37
Merged-chr6-82752766-1	chr6	82752266	82753266	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21688.0	NM_013820	15277.0	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	43.48	33.18	15.72	75.57	53.18	22.51	63.37	57.48	21.23
Merged-chr9-5345479-2	chr9	5344977	5345977	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009808)	promoter-TSS (NM_009808)	1.0	NM_009808	12364.0	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	17.16	28.57	17.57	16.19	8.86	11.25	21.12	18.13	22.48
Merged-chr8-128302535-1	chr8	128302035	128303035	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-24310.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.86	5.07	3.7	4.72	3.27	1.61	6.34	4.86	1.25
Merged-chr18-38455783-1	chr18	38455283	38456283	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 5 of 7)	intron (NM_001355749, intron 5 of 7)	36876.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.01	10.6	5.55	8.1	16.79	6.43	5.28	15.03	6.25
Merged-chr11-115630620-2	chr11	115630130	115631130	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-2335.0	NM_001252395	67283.0	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	85.24	79.72	78.62	101.88	75.11	81.18	130.97	149.45	106.17
Merged-chr18-84779209-1	chr18	84778709	84779709	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35142.0	NR_155706	102641800.0		NR_155706		Gm38576	-	predicted gene, 38576	ncRNA	6.29	4.15	1.85	8.77	4.2	4.82	2.11	5.75	6.87
Merged-chr13-49199708-1	chr13	49199208	49200208	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12161.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	251.13	298.13	156.32	316.44	343.35	275.7	293.62	367.88	187.36
Merged-chr12-69951254-1	chr12	69950754	69951754	+	608.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178628, intron 9 of 14)	Lx7|LINE|L1	-12155.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	4.58	8.75	3.7	3.37	5.13	3.22	3.17	2.65	6.25
Merged-chr10-128188591-1	chr10	128188091	128189091	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6044.0	NM_001285777	216456.0	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	5.72	2.76	5.55	3.37	1.87	4.82	6.34	1.77	2.5
Merged-chr10-41304280-1	chr10	41303780	41304780	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_133999	103199.0	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	32.04	56.22	35.15	31.04	31.72	39.39	38.02	51.29	17.49
Merged-chr2-128724250-1	chr2	128723750	128724750	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	25335.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	35.47	29.03	25.9	24.96	19.59	16.08	30.63	30.07	26.23
Merged-chr14-51985524-1	chr14	51985024	51986024	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045728)	TTS (NR_045728)	691.0	NM_198249	268739.0	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	5.72	2.3	3.7	3.37	1.4	6.43	4.22	0.0	2.5
Merged-chr1-181273083-1	chr1	181272583	181273583	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-61105.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	3.43	1.38	3.7	2.02	0.93	0.0	3.17	0.0	1.25
Merged-chr11-21570271-1	chr11	21569771	21570771	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316675, intron 1 of 8)	intron (NM_001316675, intron 1 of 8)	1663.0	NM_008618	17449.0	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	60.07	93.08	49.95	29.69	42.92	36.17	79.21	90.64	33.72
Merged-chr16-32563486-1	chr16	32562986	32563986	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45410.0	NM_011638	22042.0	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	3.43	2.76	0.0	1.35	1.87	1.61	4.22	3.1	0.0
Merged-chr9-31253502-1	chr9	31253002	31254002	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17899.0	NM_001101597	638580.0	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	10.87	9.22	11.1	10.12	3.27	5.63	7.39	10.17	7.49
Merged-chr2-5811168-1	chr2	5810668	5811668	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133837, intron 6 of 12)	intron (NM_133837, intron 6 of 12)	-33866.0	NM_016918	53893.0	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	21.74	17.97	43.47	49.25	39.19	24.92	21.12	20.34	15.61
Merged-chr3-138490685-1	chr3	138490185	138491185	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RCHARR1|DNA|hAT-Charlie	-1303.0	NM_175224	75624.0	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	12.01	16.13	8.32	11.47	14.0	9.65	14.79	8.84	3.75
Merged-chr3-51939267-1	chr3	51938767	51939767	+	608.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	165739.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	5.72	3.69	8.32	8.1	1.4	0.8	6.34	2.21	2.5
Merged-chr16-94258936-3	chr16	94258432	94259432	+	608.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360045, intron 5 of 10)	intron (NM_001360045, intron 5 of 10)	31359.0	NM_001360045	110948.0	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	6.86	3.23	1.85	4.05	2.8	0.0	5.28	0.88	3.12
Merged-chr16-77315427-3	chr16	77314953	77315953	+	607.944458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-13875.0	NR_015543	77994.0	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	13.73	10.14	5.55	10.8	5.6	19.29	12.67	9.73	9.37
Merged-chr6-120197064-2	chr6	120196554	120197554	+	607.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347432, intron 1 of 3)	intron (NM_001347432, intron 1 of 3)	3231.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.29	2.3	3.7	4.72	3.73	1.61	2.11	3.54	5.0
Merged-chr6-37390491-2	chr6	37389982	37390982	+	607.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	51666.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	5.72	6.91	3.7	4.72	5.13	6.43	5.28	3.54	7.49
Merged-chr7-123356325-2	chr7	123355836	123356836	+	607.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	13579.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	17.73	18.89	33.3	20.92	16.79	8.84	23.24	27.86	13.74
Merged-chr4-137964480-1	chr4	137963980	137964980	+	607.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199307, exon 20 of 20)	3' UTR (NM_199307, exon 20 of 20)	-28976.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	8.58	0.46	2.77	2.7	2.33	0.0	0.0	0.88	2.5
Merged-chr3-69670390-2	chr3	69669831	69670831	+	607.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11D|LTR|ERVK	-51724.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	102.4	154.36	92.5	143.71	188.47	115.75	191.17	204.72	121.16
Merged-chr2-91921416-3	chr2	91920902	91921902	+	607.638916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007699)	promoter-TSS (NM_007699)	-787.0	NM_007699	12672.0	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.43	3.23	0.92	1.35	3.27	3.22	6.34	1.33	1.25
Merged-chr12-69574679-2	chr12	69574200	69575200	+	607.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8328.0	NM_001033236	207965.0	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	76.66	90.77	36.07	77.59	82.11	58.68	82.38	91.09	33.1
Merged-chr7-36690687-2	chr7	36690183	36691183	+	607.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7435.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	2.29	0.92	0.0	2.02	1.4	1.61	0.0	3.1	1.25
Merged-chr1-152795093-3	chr1	152794637	152795637	+	607.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-5016.0	NM_010877	17970.0	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	30.89	40.09	41.62	26.31	14.0	8.04	34.85	36.7	21.86
Merged-chr4-121007462-1	chr4	121006962	121007962	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133716, intron 1 of 9)	intron (NM_133716, intron 1 of 9)	9785.0	NM_133716	69780.0	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	19.45	22.58	22.2	12.82	14.46	7.23	19.01	10.17	16.24
Merged-chr12-54998744-2	chr12	54998226	54999226	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-12390.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	24.03	12.9	12.02	24.96	15.86	20.9	21.12	14.15	5.0
Merged-chr5-123864131-2	chr5	123863653	123864653	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_030701, exon 1 of 1)	3' UTR (NM_030701, exon 1 of 1)	1363.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	134.43	106.9	103.59	101.21	65.31	54.66	145.75	157.85	87.43
Merged-chr19-44554755-2	chr19	44554252	44555252	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026061, intron 2 of 4)	intron (NM_026061, intron 2 of 4)	690.0	NM_001347447	67264.0	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932|CI-ASHI	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	56.63	42.39	34.22	39.81	51.32	66.71	72.88	64.11	56.83
Merged-chr9-89067007-2	chr9	89066507	89067507	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25828.0	NM_001170884	666747.0	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	1.72	6.45	14.8	6.07	11.2	4.82	0.0	0.44	3.75
Merged-chr4-110973199-1	chr4	110972699	110973699	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 4 of 12)	L2a|LINE|L2	-441807.0	NR_033793	67621.0	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	4.58	3.23	6.47	0.0	6.06	2.41	3.17	0.44	2.5
Merged-chr14-73142443-2	chr14	73141928	73142928	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001170694)	promoter-TSS (NM_001170694)	-82.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	155.6	168.65	122.09	153.16	144.62	177.64	248.2	227.27	121.16
Merged-chr18-88805035-1	chr18	88804535	88805535	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89172.0	NM_018821	54607.0	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	9.15	5.99	1.85	4.72	6.06	7.23	4.22	3.54	6.25
Merged-chr18-36122414-1	chr18	36121914	36122914	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 1 of 9)	intron (NM_001167891, intron 1 of 9)	16211.0	NR_015571	74966.0	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	4.0	2.76	1.85	0.67	2.33	3.22	1.06	0.88	2.5
Merged-chr1-191327104-1	chr1	191326604	191327604	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025864, intron 1 of 7)	(TTTTG)n|Simple_repeat|Simple_repeat	1139.0	NM_025864	66950.0	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	148.73	166.34	111.92	126.17	108.7	118.96	174.27	262.65	128.65
Merged-chr9-3025838-1	chr9	3025338	3026338	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	12905.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	177.34	591.65	76.77	206.46	626.99	77.97	381.28	261.76	73.07
Merged-chr3-109238351-2	chr3	109237856	109238856	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-102327.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	6.29	6.91	9.25	2.7	9.8	7.23	3.17	4.86	6.25
Merged-chr11-116619417-3	chr11	116618917	116619917	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	4835.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	46.91	59.9	53.65	57.35	67.64	73.95	69.71	57.92	36.22
Merged-chr2-129300630-2	chr2	129300131	129301131	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_010554, exon 7 of 7)	3' UTR (NM_010554, exon 7 of 7)	3261.0	NR_040371	100503468.0	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	-	predicted gene 14023	ncRNA	22.31	28.11	22.2	12.82	12.13	16.88	24.29	22.99	21.23
Merged-chr16-78635481-1	chr16	78634981	78635981	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58793.0	NM_025967	67102.0	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	4.58	4.15	0.0	2.7	0.93	1.61	6.34	3.54	1.25
Merged-chr1-143922084-2	chr1	143921582	143922582	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	82067.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.15	8.75	9.25	11.47	7.0	3.22	9.51	10.17	5.62
Merged-chr5-110639670-2	chr5	110639168	110640168	+	607.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13714.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	4.58	3.23	0.0	4.72	2.8	5.63	3.17	3.1	2.5
Merged-chr17-24797288-1	chr17	24796788	24797788	+	607.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-7094.0	NM_029197	75178.0	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	6.29	3.69	3.7	8.77	10.26	7.23	5.28	3.54	5.0
Merged-chr8-33931742-2	chr8	33931271	33932271	+	607.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1908.0	NM_001042675	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	4.58	5.53	0.0	8.77	3.73	5.63	20.07	13.27	8.74
Merged-chr18-23773270-2	chr18	23772766	23773766	+	607.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162941, intron 2 of 7)	intron (NM_001162941, intron 2 of 7)	1723.0	NR_105778	102465185.0		NR_105778	ENSMUSG00000098607	Mir6360	Gm27296|mmu-mir-6360	microRNA 6360	ncRNA	5.15	3.23	3.7	7.42	4.2	4.02	4.22	1.33	3.75
Merged-chr5-132437114-1	chr5	132436614	132437614	+	607.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177047, intron 1 of 19)	intron (NM_177047, intron 1 of 19)	105229.0	NM_177047	319974.0	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	5.72	0.0	9.25	5.4	1.4	5.63	4.22	1.77	2.5
Merged-chr5-75929110-1	chr5	75928610	75929610	+	607.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	49318.0	NM_010612	16542.0	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2	kinase insert domain protein receptor	protein-coding	2.86	1.84	1.85	4.05	5.13	1.61	2.11	1.33	5.0
Merged-chr8-125177182-1	chr8	125176682	125177682	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122987.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.15	6.91	9.25	9.45	17.26	12.86	2.11	0.88	1.25
Merged-chr16-75617761-2	chr16	75617247	75618247	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	A-rich|Low_complexity|Low_complexity	24856.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	4.58	1.38	2.77	4.72	0.47	1.61	0.0	0.88	2.5
Merged-chr16-57200700-1	chr16	57200200	57201200	+	607.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 5 of 17)	MIRc|SINE|MIR	771.0	NM_001358434	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	11.44	5.53	3.7	4.72	4.67	4.82	4.22	0.44	3.75
Merged-chr6-83077849-2	chr6	83077330	83078330	+	607.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_197992)	promoter-TSS (NM_197992)	-560.0	NM_197992	69837.0	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	36.04	23.04	36.07	35.09	34.06	40.19	26.4	10.61	26.23
Merged-chr1-189662089-1	chr1	189661589	189662589	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081363, exon 11 of 18)	exon (NM_001081363, exon 11 of 18)	25997.0	NM_001081363	108000.0	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	4.58	4.15	5.55	3.37	3.27	3.22	2.11	6.19	3.75
Merged-chr9-105282881-1	chr9	105282381	105283381	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172461, intron 12 of 15)	intron (NM_172461, intron 12 of 15)	112406.0	NM_172461	208583.0	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	4.58	1.84	5.55	8.1	0.47	1.61	2.11	0.0	3.75
Merged-chr1-132521003-1	chr1	132520503	132521503	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177129, intron 16 of 22)	intron (NM_177129, intron 16 of 22)	14773.0	NM_029025	74626.0	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	3.43	0.46	5.55	1.35	0.93	0.0	2.11	0.44	1.25
Merged-chr6-97518085-1	chr6	97517585	97518585	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	-30265.0	NM_001346637	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	3.43	0.46	3.7	4.72	1.4	8.04	4.22	3.54	3.12
Merged-chr5-64354972-1	chr5	64354472	64355472	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112970.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	12.01	5.53	12.95	17.54	9.8	12.06	16.9	8.84	10.62
Merged-chr2-105334563-1	chr2	105334063	105335063	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028747, intron 3 of 3)	intron (NM_028747, intron 3 of 3)	64756.0	NM_009037	19672.0	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	2.86	0.92	3.7	2.7	1.87	5.63	1.06	1.33	5.62
Merged-chrX-78523283-2	chrX	78522785	78523785	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 1 of 3)	intron (NM_027322, intron 1 of 3)	60520.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	10.3	4.61	3.7	5.4	6.53	1.61	6.34	4.86	3.75
Merged-chr8-34147580-1	chr8	34147080	34148080	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026609)	promoter-TSS (NM_026609)	-841.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	35.47	58.06	61.05	58.03	41.99	39.39	103.51	95.95	50.59
Merged-chr14-18327188-1	chr14	18326688	18327688	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009455, intron 2 of 5)	CpG	4656.0	NM_009455	22194.0	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	6.86	8.29	2.77	8.77	8.86	8.84	10.56	4.42	3.75
Merged-chr4-134081834-1	chr4	134081334	134082334	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001162970, exon 11 of 20)	exon (NM_001162970, exon 11 of 20)	13239.0	NM_013706	23833.0	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	1.72	0.92	5.55	3.37	1.87	3.22	1.06	1.33	6.25
Merged-chr7-74990404-1	chr7	74989904	74990904	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39807.0	NR_131122	75205.0	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	Gm44904	RIKEN cDNA 4930533N22 gene	ncRNA	4.0	3.23	3.7	4.05	3.73	3.22	5.28	1.77	2.5
Merged-chr10-70173403-1	chr10	70172903	70173903	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 5 of 8)	intron (NM_001111121, intron 5 of 8)	-31261.0	NM_001304739	69563.0	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Linc-RAM|Mln	myoregulin	protein-coding	8.01	0.92	1.85	3.37	2.33	0.0	2.11	0.44	0.0
Merged-chr4-101298611-1	chr4	101298111	101299111	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33329.0	NM_146145	16451.0	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	1.14	3.69	4.62	6.07	5.6	2.41	6.34	2.21	2.5
Merged-chr17-42911782-1	chr17	42911282	42912282	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35358.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	72.08	116.58	81.4	92.44	97.03	102.88	172.16	176.87	89.31
Merged-chr18-41888567-1	chr18	41888067	41889067	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029942, intron 5 of 6)	intron (NM_029942, intron 5 of 6)	62627.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	6.29	2.3	4.62	4.72	2.33	1.61	4.22	2.65	3.75
Merged-chr13-105039862-1	chr13	105039362	105040362	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	15068.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.57	3.69	1.85	4.05	4.2	7.23	6.34	1.77	0.0
Merged-chr14-119052561-1	chr14	119052061	119053061	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081252, intron 16 of 38)	ORR1A2-int|LTR|ERVL-MaLR	-46404.0	NR_153786	102635192.0	Mm.398079	NR_153786		Gm16835	-	predicted gene, 16835	ncRNA	1.72	2.3	2.77	2.02	3.73	2.41	3.17	2.65	1.87
Merged-chr2-69778859-1	chr2	69778359	69779359	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077684, intron 4 of 8)	intron (NM_001077684, intron 4 of 8)	10627.0	NM_001077684	75051.0	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	9.72	12.44	9.25	15.52	15.39	12.86	14.79	11.5	9.99
Merged-chr5-24046444-1	chr5	24045944	24046944	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15754.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	51.48	54.37	52.72	36.43	36.85	51.44	59.15	54.39	31.85
Merged-chr6-121244570-1	chr6	121244070	121245070	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1336.0	NM_011909	24110.0	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	11.44	5.07	5.55	5.4	6.06	8.04	13.73	9.29	6.25
Merged-chr6-137690882-1	chr6	137690382	137691382	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR40c|LTR|ERVL	-41597.0	NM_007945	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	8.58	5.53	0.92	3.37	0.93	0.0	5.28	4.86	2.5
Merged-chr17-17585996-1	chr17	17585496	17586496	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	intron (NM_172827, intron 1 of 17)	38493.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	38.9	40.55	39.77	26.31	16.79	45.01	24.29	43.33	31.85
Merged-chr16-17881038-1	chr16	17880538	17881538	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109750, intron 1 of 9)	B4A|SINE|B4	10690.0	NM_010048	13356.0	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	8.01	4.61	0.0	8.1	6.06	7.23	7.39	4.86	6.87
Merged-chr2-160732126-1	chr2	160731626	160732626	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021280, intron 2 of 33)	CpG-8784	816.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	27.46	6.45	11.1	28.34	8.86	19.29	28.52	4.86	8.74
Merged-chr8-84642149-1	chr8	84641649	84642649	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	20703.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	5.15	0.92	11.1	6.07	0.93	10.45	1.06	1.77	7.49
Merged-chr17-31685711-2	chr17	31685203	31686203	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7772.0	NM_001278570	12954.0	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	5.15	2.3	0.92	4.72	0.93	0.0	3.17	1.33	2.5
Merged-chr14-118816765-1	chr14	118816265	118817265	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160097, intron 1 of 3)	intron (NM_001160097, intron 1 of 3)	28894.0	NM_001160097	58187.0	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	3.43	0.0	1.85	0.0	0.47	2.41	0.0	2.21	2.5
Merged-chr10-51521665-2	chr10	51521166	51522166	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SSU-rRNA_Hsa|rRNA|rRNA	30768.0	NM_013532	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	6.86	8.29	18.5	18.22	12.6	23.31	9.51	7.96	20.61
Merged-chr17-31019651-1	chr17	31019151	31020151	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38043.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	30.32	17.97	12.95	33.74	24.72	20.9	17.96	26.09	6.87
Merged-chr8-71789249-1	chr8	71788749	71789749	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-63568.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	28.6	25.8	18.5	21.59	21.46	9.65	43.3	38.91	17.49
Merged-chr19-41987198-2	chr19	41986706	41987706	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5443.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	24.6	31.33	22.2	16.19	14.93	13.66	23.24	14.59	15.61
Merged-chr1-33945151-1	chr1	33944651	33945651	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 2 of 102)	intron (NM_001276764, intron 2 of 102)	36926.0	NM_001276764	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	4.0	2.3	3.7	5.4	2.8	3.22	3.17	1.77	1.25
Merged-chr2-158136062-1	chr2	158135562	158136562	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009373, intron 3 of 12)	intron (NM_009373, intron 3 of 12)	10330.0	NM_009373	21817.0	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	98.39	89.39	56.42	145.74	102.17	115.75	144.7	124.25	89.31
Merged-chr15-62220184-1	chr15	62219684	62220684	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003523)	promoter-TSS (NR_003523)	-733.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	5.15	4.15	3.7	2.02	2.33	4.82	1.06	2.21	3.75
Merged-chr19-9984454-1	chr19	9983954	9984954	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011913)	TTS (NM_011913)	1808.0	NM_010239	14319.0	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	110.41	115.66	71.22	161.26	167.94	90.83	141.53	151.22	63.7
Merged-chr17-29991000-1	chr17	29990500	29991500	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14039.0	NM_148926	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	4.0	3.23	3.7	2.7	1.4	6.43	1.06	3.98	1.25
Merged-chr5-28076136-1	chr5	28075636	28076636	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153526, intron 4 of 4)	intron (NM_153526, intron 4 of 4)	4724.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	9.15	4.61	15.72	8.1	3.73	8.04	1.06	3.98	3.12
Merged-chr16-76227535-1	chr16	76227035	76228035	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	104922.0	NR_040575	78215.0	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	33.75	33.64	24.97	33.74	28.46	36.17	61.26	65.44	28.73
Merged-chr18-32173079-1	chr18	32172579	32173579	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011946, intron 1 of 16)	A-rich|Low_complexity|Low_complexity	9990.0	NM_011946	26405.0	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	14.3	17.05	13.87	9.45	14.46	14.47	21.12	12.82	11.24
Merged-chr4-98056840-1	chr4	98056340	98057340	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010905, intron 7 of 10)	URR1A|DNA|hAT-Charlie	279214.0	NM_010905	18027.0	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	6.86	5.07	3.7	4.72	5.6	7.23	2.11	4.86	3.75
Merged-chr5-101828107-1	chr5	101827607	101828607	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	62977.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	8.01	8.29	1.85	7.42	3.27	4.02	3.17	1.77	1.25
Merged-chr4-128973844-2	chr4	128973350	128974350	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-11395.0	NM_001301841	242669.0	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	17.73	15.21	10.17	9.45	11.2	20.9	17.96	19.9	12.49
Merged-chr4-55817633-1	chr4	55817133	55818133	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-285158.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	15.45	14.28	4.62	10.12	4.67	4.82	9.51	4.86	5.0
Merged-chr1-33994394-1	chr1	33993894	33994894	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-17431.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.29	11.52	5.55	6.75	5.13	10.45	5.28	1.33	8.74
Merged-chr18-55341740-1	chr18	55341240	55342240	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-349149.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	3.43	5.53	4.62	8.1	6.53	8.84	3.17	6.19	1.25
Merged-chr13-74341258-3	chr13	74340749	74341749	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023281, intron 3 of 14)	intron (NM_023281, intron 3 of 14)	8991.0	NM_023281	66945.0	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	5.72	7.83	10.17	5.4	4.2	9.65	4.22	3.98	3.75
Merged-chr4-88419589-1	chr4	88419089	88420089	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025760, intron 6 of 6)	intron (NM_025760, intron 6 of 6)	19337.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	15.45	25.34	15.72	25.64	13.53	18.49	17.96	15.92	27.48
Merged-chr10-125419022-2	chr10	125418520	125419520	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-90057.0	NM_001358496	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	6.29	3.23	0.0	0.67	3.73	4.82	0.0	5.31	3.75
Merged-chr8-105605666-2	chr8	105605149	105606149	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081241, intron 1 of 21)	CpG	420.0	NM_001081241	75687.0	Mm.41261	NM_001081241	ENSMUSG00000038604	Ripor1	2310066E14Rik|AI837433|Fam65a	RHO family interacting cell polarization regulator 1	protein-coding	102.97	89.85	61.05	77.59	67.64	74.75	71.82	54.39	51.21
Merged-chr5-123171822-1	chr5	123171322	123172322	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008277)	TTS (NM_008277)	10901.0	NM_008277	15445.0	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	4HPPD|Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	2.29	1.38	1.85	8.1	0.47	3.22	2.11	0.44	2.5
Merged-chr11-19954577-1	chr11	19954077	19955077	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	30135.0	NM_033523	114716.0	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	14.87	20.74	9.25	13.49	9.33	3.22	5.28	8.84	1.25
Merged-chr16-90142411-1	chr16	90141911	90142911	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	174.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	4.58	2.76	3.7	6.07	0.93	0.8	0.0	0.0	3.12
Merged-chr7-100230780-1	chr7	100230280	100231280	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027629, intron 1 of 13)	intron (NM_027629, intron 1 of 13)	3173.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	15.45	13.82	7.4	28.34	19.13	24.11	24.29	29.63	11.87
Merged-chr4-40303650-2	chr4	40303143	40304143	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9589.0	NR_040663	75819.0	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	4.0	2.3	0.0	3.37	6.53	3.22	4.22	3.1	1.25
Merged-chr17-5561390-1	chr17	5560890	5561890	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	68790.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	11.44	10.14	18.5	12.82	13.06	6.43	9.51	8.4	18.74
Merged-chr14-55491541-1	chr14	55491041	55492041	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155104, intron 1 of 38)	intron (NR_155104, intron 1 of 38)	471.0	NR_155104	268747.0	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	2.86	3.23	7.4	2.7	2.33	0.0	9.51	2.21	1.25
Merged-chr3-37657068-1	chr3	37656568	37657568	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	17121.0	NM_011896	24063.0	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	9.15	5.53	5.55	4.05	5.13	0.0	3.17	3.54	1.25
Merged-chr7-75456375-1	chr7	75455875	75456875	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 1 of 36)	intron (NM_029332, intron 1 of 36)	841.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	21.17	14.75	5.55	21.59	12.6	19.29	13.73	5.75	10.62
Merged-chr5-129786071-1	chr5	129785571	129786571	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133900, intron 1 of 7)	intron (NM_133900, intron 1 of 7)	1182.0	NM_133900	100678.0	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	40.04	52.07	38.85	30.36	34.52	18.49	38.02	49.08	19.36
Merged-chr10-99271194-1	chr10	99270694	99271694	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7963.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	20.59	3.23	0.0	20.24	1.4	4.82	14.79	6.63	1.87
Merged-chr3-157634592-2	chr3	157634110	157635110	+	607.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	intron (NM_011196, intron 2 of 2)	67718.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	3.43	5.53	5.55	4.05	2.33	3.22	5.28	5.75	8.74
Merged-chr5-136251214-1	chr5	136250714	136251714	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001291238, intron 20 of 22)	intron (NM_001291238, intron 20 of 22)	-6274.0	NM_018825	23921.0	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	5.15	5.99	3.7	2.7	1.4	1.61	5.28	7.07	5.0
Merged-chr8-72584456-1	chr8	72583956	72584956	+	607.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357280, intron 4 of 4)	intron (NM_001357280, intron 4 of 4)	12633.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	42.33	70.5	82.32	2.02	2.33	6.43	51.75	65.88	64.95
Merged-chr11-47776051-1	chr11	47775551	47776551	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-396749.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	6.29	2.76	2.77	1.35	0.47	4.82	1.06	3.54	7.49
Merged-chr6-56860387-1	chr6	56859887	56860887	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012056, intron 5 of 9)	intron (NM_012056, intron 5 of 9)	28328.0	NM_012056	27055.0	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	5.15	4.61	1.85	7.42	7.93	1.61	4.22	1.77	3.12
Merged-chr8-77421791-1	chr8	77421291	77422291	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 5 of 22)	intron (NM_030113, intron 5 of 22)	-95265.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	16.02	12.9	3.7	24.29	16.79	11.25	10.56	10.61	3.12
Merged-chr6-17359489-1	chr6	17358989	17359989	+	607.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51849.0	NM_001243064	12389.0	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	2.86	2.76	12.95	4.72	0.93	0.0	2.11	0.44	0.62
Merged-chr11-54921164-2	chr11	54920688	54921688	+	606.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271456, intron 12 of 18)	intron (NM_001271456, intron 12 of 18)	18334.0	NM_008161	14778.0	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	49.2	43.31	24.05	49.25	53.18	61.09	25.35	36.26	21.86
Merged-chr5-143465548-2	chr5	143465046	143466046	+	606.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 1 of 14)	ID_B1|SINE|B4	1053.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	82.95	77.41	32.37	96.48	75.57	53.85	88.72	102.14	48.71
Merged-chr11-117655465-1	chr11	117654965	117655965	+	606.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	CpG	1176.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	84.09	35.94	50.87	69.5	23.33	50.64	107.73	28.3	38.72
Merged-chr12-111912066-2	chr12	111911597	111912597	+	606.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-4042.0	NM_011625	21981.0	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	18.31	16.59	20.35	71.52	63.45	46.62	69.71	63.23	38.72
Merged-chr19-47510670-1	chr19	47510170	47511170	+	606.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175360, intron 7 of 9)	intron (NM_175360, intron 7 of 9)	-2312.0	NR_045322	100503104.0	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	26.89	23.04	22.2	63.42	56.91	53.85	30.63	23.88	18.74
Merged-chr1-35850336-1	chr1	35849836	35850836	+	606.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-218064.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	32.04	34.1	4.62	6.07	3.73	3.22	5.28	9.73	2.5
Merged-chr13-5787302-3	chr13	5786806	5787806	+	606.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	70786.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.43	5.53	7.4	4.05	3.73	1.61	9.51	10.61	1.25
Merged-chr12-52292161-2	chr12	52291662	52292662	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029760, intron 8 of 10)	intron (NM_029760, intron 8 of 10)	188447.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	5.72	5.07	5.55	6.75	6.06	8.04	14.79	9.29	1.25
Merged-chr5-43887579-1	chr5	43887079	43888079	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007646, intron 1 of 7)	intron (NM_007646, intron 1 of 7)	18770.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	16.02	22.58	16.65	16.19	16.79	29.74	16.9	18.13	14.36
Merged-chr7-43278092-1	chr7	43277592	43278592	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35208.0	NM_001357812	69930.0	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	5.72	5.53	0.0	3.37	3.73	6.43	3.17	2.65	6.25
Merged-chr8-22478868-2	chr8	22478371	22479371	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011394, intron 1 of 10)	intron (NM_011394, intron 1 of 10)	-1992.0	NM_001146117	102032.0	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	12.59	22.12	7.4	20.24	19.59	27.33	49.64	36.26	21.86
Merged-chr11-106762662-2	chr11	106762158	106763158	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_073165, intron 6 of 9)	intron (NR_073165, intron 6 of 9)	11432.0	NM_001033435	380732.0	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	9.15	20.74	37.92	24.29	12.13	25.72	15.84	12.82	19.98
Merged-chr9-70323479-1	chr9	70322979	70323979	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 7 of 27)	intron (NM_181072, intron 7 of 27)	82274.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	6.29	5.53	1.85	7.42	1.87	1.61	4.22	3.1	3.12
Merged-chr15-76472668-2	chr15	76472154	76473154	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013481, intron 2 of 15)	intron (NM_013481, intron 2 of 15)	4615.0	NM_013481	12181.0	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	2.29	4.15	5.55	0.67	2.33	0.0	3.17	3.1	1.25
Merged-chr2-103063095-2	chr2	103062592	103063592	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175094, intron 1 of 10)	intron (NM_175094, intron 1 of 10)	10421.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	2.86	4.15	12.95	7.42	4.2	0.0	7.39	2.65	3.75
Merged-chr2-14604211-2	chr2	14603696	14604696	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023116)	promoter-TSS (NM_023116)	-110.0	NM_023116	12296.0	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	6.86	1.84	3.7	2.02	0.93	8.04	2.11	0.44	6.25
Merged-chr7-4151517-1	chr7	4151017	4152017	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_021454, exon 3 of 3)	exon (NM_021454, exon 3 of 3)	-1645.0	NM_175529	243813.0	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	29.75	18.43	6.47	28.34	15.39	14.47	16.9	13.27	5.62
Merged-chr4-26444008-1	chr4	26443508	26444508	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-97356.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	3.43	3.69	1.85	5.4	4.67	3.22	4.22	4.42	7.49
Merged-chr5-139024071-2	chr5	139023585	139024585	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359099, intron 9 of 10)	intron (NM_001359099, intron 9 of 10)	-29132.0	NM_008808	18590.0	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	114.41	110.59	94.35	104.58	73.24	94.85	125.69	124.25	60.58
Merged-chr6-48645822-2	chr6	48645334	48646334	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1400.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	7.44	1.84	2.77	5.4	0.47	2.41	5.28	0.88	3.75
Merged-chr9-35116050-1	chr9	35115550	35116550	+	606.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029475)	promoter-TSS (NR_029475)	-678.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	104.11	110.59	109.14	102.56	78.84	138.25	145.75	106.56	93.05
Merged-chr14-67941108-2	chr14	67940613	67941613	+	606.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7541.0	NM_177780	68813.0	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	4.0	2.76	3.7	4.05	0.93	0.0	2.11	2.21	5.0
Merged-chr2-118772331-1	chr2	118771831	118772831	+	606.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145644)	promoter-TSS (NM_001145644)	-438.0	NM_001145644	53906.0	Mm.36777	NM_025308	ENSMUSG00000046804	Phgr1	1810007E14Rik|AA238765	proline/histidine/glycine-rich 1	protein-coding	5.15	2.76	1.85	1.35	1.4	0.0	3.17	2.21	6.25
Merged-chr2-48615889-3	chr2	48615402	48616402	+	606.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198207.0	NM_007396	11480.0	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	2.86	4.61	1.85	4.05	2.33	0.8	4.22	3.1	3.75
Merged-chr10-96267822-1	chr10	96267322	96268322	+	606.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41615.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.15	3.23	7.4	6.75	5.13	1.61	8.45	5.75	8.74
Merged-chr3-39175080-1	chr3	39174580	39175580	+	606.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	288140.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	2.29	2.76	3.7	2.02	3.27	4.02	27.46	37.14	25.61
Merged-chr2-80275258-2	chr2	80274736	80275736	+	606.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17234.0	NM_177256	320769.0	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	5.15	2.76	0.0	2.7	3.73	3.22	0.0	3.98	2.5
Merged-chr9-70208267-2	chr9	70207760	70208760	+	606.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	910.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	11.44	13.36	16.65	19.57	21.93	20.09	9.51	7.52	3.75
Merged-chr10-80171107-2	chr10	80170621	80171621	+	606.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_007705, exon 7 of 7)	3' UTR (NM_007705, exon 7 of 7)	-1823.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	34.9	36.86	23.12	22.94	22.39	27.33	43.3	48.2	38.72
Merged-chr1-87006633-2	chr1	87006130	87007130	+	606.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172157, intron 14 of 21)	intron (NM_001172157, intron 14 of 21)	83298.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	4.0	6.45	12.95	9.45	1.87	6.43	10.56	4.42	2.5
Merged-chr1-50962775-1	chr1	50962275	50963275	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019790, intron 4 of 9)	intron (NM_019790, intron 4 of 9)	35252.0	NM_019790	56363.0	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	4.58	6.45	3.7	8.1	5.6	3.22	5.28	9.73	5.0
Merged-chr6-128841061-1	chr6	128840561	128841561	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14746.0	NM_030599	80782.0	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	2.29	4.15	0.92	8.1	1.87	4.02	4.22	3.98	8.12
Merged-chr2-153215613-1	chr2	153215113	153216113	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9828.0	NM_198617	241732.0	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	106.97	61.75	37.92	192.29	127.82	87.61	82.38	83.57	31.85
Merged-chr8-120596126-2	chr8	120595634	120596634	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7059.0	NM_178856	272551.0	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	6.29	3.23	0.0	6.75	1.87	1.61	7.39	1.33	3.12
Merged-chr9-103364375-1	chr9	103363875	103364875	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175833, intron 1 of 4)	intron (NM_175833, intron 1 of 4)	604.0	NM_001134427	321022.0	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	81.23	77.41	49.95	80.29	88.17	52.25	98.23	92.41	59.95
Merged-chr14-54766427-1	chr14	54765927	54766927	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 1 of 10)	intron (NM_016972, intron 1 of 10)	15459.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	18.31	19.81	10.17	27.66	18.19	34.56	5.28	3.54	5.62
Merged-chr12-44273613-1	chr12	44273113	44274113	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026164, intron 1 of 9)	intron (NM_026164, intron 1 of 9)	4459.0	NM_026164	67452.0	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	7.44	7.83	9.25	7.42	5.13	3.22	3.17	4.42	1.25
Merged-chr17-24360099-1	chr17	24359599	24360599	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013855, intron 2 of 32)	intron (NM_013855, intron 2 of 32)	8076.0	NM_001039581	27410.0	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	12.01	7.83	11.1	12.14	6.06	12.86	11.62	7.52	5.0
Merged-chr16-97540387-1	chr16	97539887	97540887	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 2 of 13)	intron (NM_013606, intron 2 of 13)	4304.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	13.16	9.22	17.57	14.84	2.33	19.29	6.34	5.31	8.12
Merged-chr4-33467268-1	chr4	33466768	33467768	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305273, intron 14 of 15)	intron (NM_001305273, intron 14 of 15)	29187.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	10.87	8.75	0.92	7.42	7.0	0.0	4.22	3.98	1.25
Merged-chr11-75456574-1	chr11	75456074	75457074	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-1857.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	17.73	14.75	14.8	14.84	13.53	8.84	15.84	6.19	13.12
Merged-chr14-62868293-1	chr14	62867793	62868793	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	2751.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	44.05	45.16	51.8	42.51	33.59	18.49	65.48	44.22	48.71
Merged-chr19-55231393-1	chr19	55230893	55231893	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081076, intron 4 of 20)	intron (NM_001081076, intron 4 of 20)	9843.0	NM_001081076	73707.0	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	48.62	35.94	37.0	67.47	35.45	45.01	74.99	35.37	41.22
Merged-chr6-115647547-1	chr6	115647047	115648047	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	28341.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	26.31	33.18	34.22	41.83	32.19	26.53	46.47	32.72	17.49
Merged-chr18-14812408-1	chr18	14811908	14812908	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001100449, intron 6 of 14)	CT-rich|Low_complexity|Low_complexity	29163.0	NM_001100449	72504.0	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	5.15	8.29	13.87	4.05	8.86	9.65	8.45	7.07	20.61
Merged-chr5-113724653-1	chr5	113724153	113725153	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033216, exon 1 of 3)	non-coding (NR_033216, exon 1 of 3)	119.0	NR_033216	381707.0	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	3.43	0.46	4.62	3.37	1.4	3.22	3.17	0.88	2.5
Merged-chr18-62171637-1	chr18	62171137	62172137	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	8344.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	25.74	28.57	25.9	26.31	19.13	24.92	20.07	17.24	13.74
Merged-chr10-95780464-1	chr10	95779964	95780964	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160199.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	14.87	20.27	27.75	31.71	20.99	25.72	25.35	17.69	18.11
Merged-chr2-34742850-1	chr2	34742350	34743350	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	RSINE1|SINE|B4	12382.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	20.59	27.65	33.3	31.71	22.86	14.47	15.84	16.8	19.98
Merged-chr6-87017094-1	chr6	87016594	87017594	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020045, intron 3 of 7)	B3A|SINE|B2	7258.0	NM_020045	56748.0	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.0	0.46	1.85	5.4	2.33	1.61	5.28	1.77	0.0
Merged-chr18-36508594-1	chr18	36508094	36509094	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	7211.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	10.87	4.15	7.4	7.42	0.93	0.8	4.22	0.88	2.5
Merged-chr3-34664221-1	chr3	34663721	34664721	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015580, intron 4 of 4)	CpG	14226.0	NM_011443	20674.0	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	2.29	2.3	1.85	0.67	0.0	1.61	2.11	1.77	1.25
Merged-chr3-8734980-1	chr3	8734480	8735480	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67942.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	18.88	21.2	12.95	29.01	17.73	24.11	10.56	15.92	9.37
Merged-chr7-16463432-1	chr7	16462932	16463932	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008718, intron 5 of 11)	intron (NM_008718, intron 5 of 11)	10653.0	NM_026938	69094.0	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	2.29	3.69	1.85	5.4	0.93	1.61	3.17	0.88	2.5
Merged-chr17-36997287-1	chr17	36996787	36997787	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3876.0	NM_001168502	22715.0	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	6.29	3.69	0.0	0.67	2.33	1.61	2.11	0.88	4.37
Merged-chr7-99974783-1	chr7	99974283	99975283	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175388, intron 1 of 5)	intron (NM_175388, intron 1 of 5)	5675.0	NM_175388	108937.0	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	7.44	9.22	1.85	14.17	10.26	12.06	9.51	3.98	7.49
Merged-chr15-62252307-1	chr15	62251807	62252807	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_132747, intron 4 of 4)	intron (NR_132747, intron 4 of 4)	-32856.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	2.86	2.3	4.62	4.72	0.93	1.61	2.11	1.33	6.25
Merged-chr1-157047060-1	chr1	157046560	157047560	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61590.0	NM_001305059	73435.0	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	24.03	29.49	45.32	31.71	23.79	35.37	20.07	11.5	14.36
Merged-chr17-73971013-1	chr17	73970513	73971513	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20817.0	NM_011723	22436.0	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	46.91	50.23	37.92	74.22	77.44	66.71	90.83	85.78	71.2
Merged-chr10-91191527-1	chr10	91191027	91192027	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19908.0	NM_001080130	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	8.01	8.75	12.02	9.45	7.0	6.43	13.73	14.15	2.5
Merged-chr18-77784595-1	chr18	77784095	77785095	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-9955.0	NM_013831	19201.0	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	4.58	4.61	3.7	8.1	4.2	5.63	2.11	2.21	8.74
Merged-chr18-81536335-1	chr18	81535835	81536835	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	455745.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	3.43	4.61	3.7	2.02	3.27	6.43	3.17	1.77	0.0
Merged-chr13-91133517-1	chr13	91133017	91134017	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	90470.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	5.72	15.21	11.1	10.8	17.73	12.06	16.9	17.69	5.0
Merged-chr4-155153027-1	chr4	155152527	155153527	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66423.0	NM_001356327	76866.0	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.57	1.84	3.7	4.05	2.33	4.02	5.28	0.44	3.12
Merged-chr7-142060486-1	chr7	142059986	142060986	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001347560, exon 1 of 5)	5' UTR (NM_001347560, exon 1 of 5)	367.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	124.14	97.23	98.97	109.98	63.91	96.45	113.01	55.27	46.84
Merged-chr17-53485872-1	chr17	53485372	53486372	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025887, intron 2 of 5)	MLTR11A|LTR|ERVK	6638.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	7.44	9.22	7.4	11.47	10.73	19.29	17.96	27.41	14.99
Merged-chr6-124359525-1	chr6	124359025	124360025	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-2439.0	NM_001177502	76921.0	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	74.94	91.24	39.77	77.59	63.45	72.34	48.58	71.63	46.84
Merged-chr7-75753641-1	chr7	75753141	75754141	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_029332, exon 37 of 37)	3' UTR (NM_029332, exon 37 of 37)	-94697.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	4.0	2.76	0.0	3.37	1.4	0.0	5.28	0.0	3.12
Merged-chr16-75676029-1	chr16	75675529	75676529	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83138.0	NM_198302	224344.0	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	1.14	2.76	1.85	6.07	1.87	3.22	5.28	2.21	2.5
Merged-chr1-82795514-2	chr1	82795004	82796004	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27048.0	NM_025453	66261.0	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	19.45	23.5	17.57	33.74	24.72	12.86	29.57	26.53	16.86
Merged-chr16-87405192-1	chr16	87404692	87405692	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081068, intron 17 of 29)	ORR1B1|LTR|ERVL-MaLR	27414.0	NM_001081068	78913.0	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	6.86	2.76	3.7	4.72	1.4	6.43	6.34	2.21	5.0
Merged-chr8-108599924-1	chr8	108599424	108600424	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15247.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	13.16	9.22	4.62	13.49	8.4	8.04	11.62	8.4	11.87
Merged-chr12-104131610-1	chr12	104131110	104132110	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173024, intron 2 of 4)	intron (NM_173024, intron 2 of 4)	3614.0	NM_173024	271047.0	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	6.86	4.15	3.7	8.1	7.0	8.04	14.79	6.19	5.62
Merged-chr16-4914297-1	chr16	4913797	4914797	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357062, intron 5 of 17)	intron (NM_001357062, intron 5 of 17)	-24814.0	NM_001316715	66911.0	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	20.02	30.87	30.52	27.66	21.93	46.62	33.8	19.01	13.12
Merged-chr15-93274363-1	chr15	93273863	93274863	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346785, intron 1 of 7)	intron (NM_001346785, intron 1 of 7)	816.0	NM_001357006	223827.0	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	77.23	102.75	74.92	54.65	45.25	37.78	71.82	65.0	34.35
Merged-chr2-68451263-2	chr2	68450771	68451771	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	20710.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	4.58	2.76	3.7	6.75	5.13	3.22	2.11	4.86	3.75
Merged-chr2-166655918-1	chr2	166655418	166656418	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	57914.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	32.61	22.12	20.35	24.96	16.79	23.31	39.08	26.97	20.61
Merged-chr16-76429622-1	chr16	76429122	76430122	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-55795.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	2.86	2.3	0.0	3.37	0.93	4.82	5.28	4.86	3.75
Merged-chr10-122008427-1	chr10	122007927	122008927	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081037, intron 1 of 21)	intron (NM_001081037, intron 1 of 21)	38888.0	NM_001242411	117600.0	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	8.01	7.37	2.77	14.17	13.53	7.23	3.17	3.98	2.5
Merged-chrX-77602732-1	chrX	77602232	77603232	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	RMER15|LTR|ERVL	72720.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	5.15	5.07	1.85	1.35	2.8	0.8	4.22	0.88	8.74
Merged-chr11-104432031-2	chr11	104431534	104432534	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	10257.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	26.89	24.42	12.02	27.66	16.79	24.11	16.9	26.09	21.23
Merged-chr6-134043783-3	chr6	134043297	134044297	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	8097.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	33.18	29.95	17.57	19.57	15.39	24.11	44.36	44.66	36.22
Merged-chr17-83681035-1	chr17	83680535	83681535	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-25128.0	NM_001171054	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	52.06	60.82	52.72	35.76	30.32	43.4	43.3	74.28	51.21
Merged-chr19-25607446-1	chr19	25606946	25607946	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3091.0	NM_177360	240590.0	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	2.29	3.23	0.0	4.05	2.33	3.22	3.17	0.44	2.5
Merged-chr1-16106567-1	chr1	16106067	16107067	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133832, intron 1 of 5)	intron (NM_133832, intron 1 of 5)	685.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	27.46	18.43	11.1	24.96	23.79	28.94	10.56	8.4	15.61
Merged-chr2-31731088-1	chr2	31730588	31731588	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283047, intron 2 of 11)	intron (NM_001283047, intron 2 of 11)	-28851.0	NM_009594	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	11.44	13.36	0.92	24.96	13.06	19.29	23.24	13.71	14.36
Merged-chr7-43407770-1	chr7	43407270	43408270	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172900)	promoter-TSS (NM_172900)	-510.0	NM_172900	243958.0	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	4.58	2.76	4.62	4.05	1.87	6.43	5.28	4.42	6.25
Merged-chr7-96411051-1	chr7	96410551	96411551	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	LTR85c|LTR|Gypsy?	-69087.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	10.87	7.37	5.55	4.72	3.27	6.43	1.06	1.33	0.0
Merged-chr11-77100289-1	chr11	77099789	77100789	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176965, intron 17 of 17)	intron (NM_176965, intron 17 of 17)	-21852.0	NM_001012309	237859.0	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	8.01	0.92	3.7	0.67	0.93	1.61	0.0	0.0	1.25
Merged-chr13-30658471-1	chr13	30657971	30658971	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-1588.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	19.45	6.91	16.65	19.57	8.4	13.66	17.96	19.01	7.49
Merged-chr4-88702453-1	chr4	88701953	88702953	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11185.0	NM_008336	15974.0	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	30.32	26.26	31.45	24.29	19.13	28.94	17.96	15.92	38.72
Merged-chr7-112226635-1	chr7	112226135	112227135	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001193305, intron 1 of 25)	intron (NM_001193305, intron 1 of 25)	799.0	NM_001193305	320878.0	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	9.15	10.14	6.47	9.45	10.73	12.06	3.17	1.33	5.0
Merged-chr9-65188763-1	chr9	65188263	65189263	+	606.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25927.0	NM_177460	214424.0	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	5.15	3.69	0.92	4.72	1.87	0.0	2.11	2.65	3.75
Merged-chr1-60979602-1	chr1	60979102	60980102	+	606.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017480, intron 1 of 4)	L2b|LINE|L2	1688.0	NM_017480	54167.0	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	6.86	10.6	27.75	14.84	18.19	34.56	14.79	15.48	12.49
Merged-chr5-149015479-1	chr5	149014979	149015979	+	606.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8517.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	6.86	0.92	4.62	5.4	5.13	4.82	4.22	3.54	4.37
Merged-chr15-97760177-2	chr15	97759675	97760675	+	605.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177810, intron 6 of 27)	intron (NM_001177810, intron 6 of 27)	7491.0	NM_001177810	223864.0	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	1.72	6.45	1.85	11.47	6.06	14.47	4.22	2.21	0.62
Merged-chr2-35349409-2	chr2	35348910	35349910	+	605.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12401.0	NM_013515	13830.0	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	7.44	3.69	3.7	9.45	4.2	16.08	8.45	3.54	12.49
Merged-chr4-44071951-2	chr4	44071422	44072422	+	605.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	795.0	NM_001357539	50798.0	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	33.18	42.39	16.65	63.42	67.18	32.96	51.75	31.39	19.36
Merged-chr9-71155608-2	chr9	71155109	71156109	+	605.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_073483, intron 1 of 6)	ORR1G|LTR|ERVL-MaLR	7024.0	NM_001271843	64008.0	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	2.29	2.76	3.7	5.4	3.27	3.22	0.0	0.44	5.0
Merged-chr10-10355758-1	chr10	10355258	10356258	+	605.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001127353, intron 30 of 36)	intron (NM_001127353, intron 30 of 36)	116556.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	2.29	3.69	7.4	7.42	1.4	1.61	7.39	2.21	5.62
Merged-chr4-64497903-3	chr4	64497412	64498412	+	605.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	SYNREP_MM|Satellite|Satellite	-221309.0	NR_151546	102633436.0	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0.57	1.38	0.0	1.35	3.73	0.0	6.34	2.21	1.87
Merged-chr11-44498568-1	chr11	44498068	44499068	+	605.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20396.0	NM_028862	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.43	2.76	1.85	6.75	4.2	3.22	5.28	5.31	1.25
Merged-chr1-135639973-1	chr1	135639473	135640473	+	605.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	42197.0	NR_151586	215714.0	Mm.472859	NM_175447		Gm4793	EG215714	predicted gene 4793	ncRNA	0.57	2.76	0.92	4.72	11.66	11.25	0.0	6.63	9.99
Merged-chr8-83333273-1	chr8	83332773	83333773	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001170691)	promoter-TSS (NM_001170691)	-787.0	NM_178736	244548.0	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	9.15	10.14	5.55	8.77	16.33	24.92	10.56	10.17	12.49
Merged-chr17-83213569-2	chr17	83213073	83214073	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1710.0	NM_134117	106522.0	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	73.22	91.7	97.12	76.92	96.1	94.85	125.69	141.49	85.56
Merged-chr16-93798001-2	chr16	93797521	93798521	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027293, intron 27 of 36)	RLTR40|LTR|ERVK	-3120.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	77.8	55.75	35.15	75.57	63.91	32.15	73.93	102.58	22.48
Merged-chr15-79691190-1	chr15	79690690	79691690	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013818, intron 1 of 11)	CpG	294.0	NM_013818	14904.0	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	137.86	109.67	112.84	105.26	97.5	90.83	121.46	102.14	77.44
Merged-chr9-32520933-1	chr9	32520433	32521433	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	20519.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	88.67	83.86	64.75	86.36	64.84	67.52	82.38	79.15	44.34
Merged-chr1-92978891-2	chr1	92978377	92979377	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022320)	promoter-TSS (NM_022320)	-26.0	NM_022320	64095.0	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	11.44	3.69	20.35	8.1	5.13	6.43	4.22	1.77	4.37
Merged-chr9-64749502-2	chr9	64748999	64749999	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11743.0	NM_017382	53869.0	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	16.59	11.52	11.1	20.92	10.26	19.29	11.62	15.03	2.5
Merged-chr1-171284009-2	chr1	171283505	171284505	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013919, exon 7 of 13)	exon (NM_013919, exon 7 of 13)	-2819.0	NM_008911	19044.0	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	58.35	75.11	78.62	74.89	46.65	53.05	65.48	64.11	59.95
Merged-chr7-27592635-1	chr7	27592135	27593135	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110208, intron 1 of 13)	intron (NM_001110208, intron 1 of 13)	1083.0	NM_001110208	11652.0	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	32.61	21.66	16.65	14.84	13.06	26.53	61.26	49.08	30.6
Merged-chr1-153807645-2	chr1	153807157	153808157	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243223, intron 11 of 20)	intron (NM_001243223, intron 11 of 20)	36484.0	NM_001243223	240816.0	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	4.58	4.15	4.62	6.75	1.4	4.82	6.34	3.1	2.5
Merged-chr2-58919914-1	chr2	58919414	58920414	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 10 of 13)	L2a|LINE|L2	164730.0	NM_029692	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	71.51	71.42	38.85	65.45	56.45	37.78	51.75	42.45	12.49
Merged-chr14-10432337-1	chr14	10431837	10432837	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 4 of 9)	intron (NM_001360141, intron 4 of 9)	21121.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	4.58	6.45	1.85	4.72	5.13	11.25	4.22	2.21	9.37
Merged-chr11-102774100-3	chr11	102773615	102774615	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009613, intron 14 of 26)	CpG	12680.0	NM_001110778	11488.0	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	4.58	0.92	0.0	4.72	1.4	6.43	2.11	4.86	0.0
Merged-chr12-29693921-2	chr12	29693419	29694419	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361657, intron 3 of 24)	Lx|LINE|L1	-7474.0	NR_046080	328075.0	Mm.447832	NR_046080	ENSMUSG00000112663	C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	2.29	2.3	1.85	4.72	2.33	0.0	2.11	0.88	2.5
Merged-chr6-115836079-2	chr6	115835576	115836576	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110506, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	2336.0	NM_001110506	212516.0	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	14.3	5.99	12.95	6.75	5.13	5.63	7.39	7.52	2.5
Merged-chr3-37302895-1	chr3	37302395	37303395	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9551.0	NM_145825	207175.0	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.0	3.69	7.4	2.02	3.27	3.22	5.28	4.42	2.5
Merged-chr3-94581452-1	chr3	94580952	94581952	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001082484, intron 1 of 11)	intron (NM_001082484, intron 1 of 11)	1264.0	NM_001082484	76742.0	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	18.31	17.51	10.17	18.89	11.66	16.08	19.01	7.96	6.25
Merged-chr9-66856720-2	chr9	66856210	66857210	+	605.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173413, intron 3 of 7)	intron (NM_173413, intron 3 of 7)	-22004.0	NM_026674	68318.0	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	15.45	17.51	25.9	19.57	30.79	29.74	17.96	14.59	8.12
Merged-chr3-127633428-3	chr3	127632892	127633892	+	605.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_009718, exon 1 of 2)	5' UTR (NM_009718, exon 1 of 2)	256.0	NM_009718	11924.0	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	4.0	1.84	0.0	2.7	1.4	1.61	4.22	0.88	2.5
Merged-chr3-18613543-1	chr3	18613043	18614043	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-133066.0	NR_040544	73959.0	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	10.3	4.15	4.62	8.77	6.53	22.51	3.17	2.65	5.62
Merged-chr6-39056074-3	chr6	39055571	39056571	+	605.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 9 of 12)	intron (NM_011539, intron 9 of 12)	11515.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	41.19	19.35	24.97	29.69	14.93	12.86	31.69	9.73	11.24
Merged-chr1-51648196-1	chr1	51647696	51648696	+	605.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51478.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	1.72	0.92	2.77	2.7	1.87	3.22	7.39	4.42	2.5
Merged-chr10-78370487-1	chr10	78369987	78370987	+	605.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-18787.0	NM_053014	28169.0	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	16.02	15.67	29.6	14.17	8.86	20.09	25.35	12.38	12.49
Merged-chr1-154677914-3	chr1	154677424	154678424	+	605.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	47996.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	5.15	1.84	3.7	3.37	3.27	0.0	3.17	3.54	3.75
Merged-chr8-115564744-1	chr8	115564244	115565244	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	142150.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	5.72	4.15	5.55	8.77	5.13	22.51	5.28	3.98	13.74
Merged-chr4-133469283-1	chr4	133468783	133469783	+	605.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10850.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	14.3	10.6	11.1	16.87	14.93	12.06	9.51	6.19	0.0
Merged-chr2-121448426-2	chr2	121447923	121448923	+	605.299988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011354)	promoter-TSS (NM_011354)	-775.0	NM_011354	378702.0	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	205.37	199.52	169.27	217.26	190.34	189.69	186.94	200.74	130.53
Merged-chr12-17808766-2	chr12	17808265	17809265	+	605.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	117956.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	1.72	4.61	5.55	2.02	3.27	0.0	5.28	0.0	1.25
Merged-chr13-119613291-2	chr13	119612725	119613725	+	605.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10594.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	6.86	6.45	14.8	13.49	10.73	25.72	7.39	6.63	16.24
Merged-chr5-34549380-3	chr5	34548877	34549877	+	605.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001145859)	promoter-TSS (NM_001145859)	-199.0	NM_001145859	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	16.02	13.36	25.9	12.82	8.4	16.88	23.24	3.98	8.74
Merged-chr19-24990155-2	chr19	24989679	24990679	+	605.099976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4|LINE|L1	-9350.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	57.21	73.26	51.8	53.98	32.66	42.6	66.54	72.52	53.71
Merged-chr5-134187542-3	chr5	134187049	134188049	+	605.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359852, intron 1 of 14)	B3|SINE|B2	3511.0	NM_053266	114674.0	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	22.31	19.35	9.25	6.07	8.86	6.43	12.67	11.5	14.99
Merged-chr17-46484269-1	chr17	46483769	46484769	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001162864, exon 2 of 15)	5' UTR (NM_001162864, exon 2 of 15)	3406.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	5.15	3.23	0.0	4.72	7.93	4.02	7.39	0.88	2.5
Merged-chr9-122906758-1	chr9	122906258	122907258	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001353989, intron 2 of 2)	intron (NM_001353989, intron 2 of 2)	3512.0	NM_001353989	666257.0	Mm.390242	NM_001353989		Gm8008	EG666257|Znf660	predicted gene 8008	protein-coding	1.14	4.15	0.0	3.37	2.33	0.0	9.51	11.5	9.37
Merged-chr11-119547729-1	chr11	119547229	119548229	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045099)	promoter-TSS (NR_045099)	91.0	NM_008730	18164.0	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	2.29	1.84	0.0	4.05	0.47	3.22	5.28	1.77	3.75
Merged-chr19-57571950-1	chr19	57571450	57572450	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-39084.0	NM_181415	226255.0	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	2.86	6.91	9.25	3.37	5.13	7.23	9.51	3.54	6.87
Merged-chr14-103472409-1	chr14	103471909	103472909	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40932.0	NM_022886	64929.0	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	8.01	16.13	16.65	7.42	11.2	6.43	14.79	15.03	8.74
Merged-chr1-85840529-2	chr1	85840033	85841033	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355046, intron 5 of 9)	intron (NM_001355046, intron 5 of 9)	46516.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	36.04	50.23	74.92	62.75	34.52	40.99	40.14	49.96	55.58
Merged-chr9-69125479-1	chr9	69124979	69125979	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-164362.0	NM_001289916	19883.0	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	6.86	4.61	7.4	6.07	4.67	0.0	3.17	0.88	1.87
Merged-chr1-85544884-1	chr1	85544384	85545384	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	53926.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	2.29	2.76	0.0	2.7	1.4	4.82	1.06	0.44	2.5
Merged-chr10-8807989-1	chr10	8807489	8808489	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	78081.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	7.44	6.91	12.95	6.75	9.8	9.65	6.34	8.84	3.12
Merged-chr10-59943531-2	chr10	59943060	59944060	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	8210.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	5.15	3.23	0.0	7.42	2.8	4.82	4.22	0.88	8.74
Merged-chr9-118623559-1	chr9	118623059	118624059	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133721, intron 1 of 27)	Lx8|LINE|L1	16850.0	NM_133721	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	19.45	21.66	42.55	26.99	23.79	35.37	24.29	30.95	14.99
Merged-chr4-48278796-1	chr4	48278296	48279296	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010569)	promoter-TSS (NM_010569)	793.0	NM_029572	76299.0	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	43.48	78.33	37.0	78.27	51.32	41.8	70.76	61.46	11.24
Merged-chr2-93588277-1	chr2	93587777	93588777	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54157.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	8.01	7.37	20.35	9.45	5.13	9.65	7.39	4.42	16.86
Merged-chr6-52802356-1	chr6	52801856	52802856	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 3 of 4)	intron (NM_173406, intron 3 of 4)	88191.0	NM_001355596	52440.0	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	5.72	3.23	3.7	3.37	1.4	3.22	5.28	2.21	1.25
Merged-chr3-109353207-1	chr3	109352707	109353707	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	12524.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	9.72	6.45	11.1	14.84	10.26	25.72	7.39	6.19	4.37
Merged-chr11-89026849-2	chr11	89026349	89027349	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27446.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	46.34	41.47	65.67	39.81	25.19	39.39	40.14	29.18	34.97
Merged-chr12-79638124-2	chr12	79637625	79638625	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	286608.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	18.88	18.43	24.05	13.49	9.8	9.65	16.9	19.01	25.61
Merged-chr10-41489091-1	chr10	41488591	41489591	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009213, intron 3 of 9)	intron (NM_009213, intron 3 of 9)	1249.0	NM_009213	20598.0	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	2.86	3.69	0.0	4.05	4.2	6.43	5.28	1.77	5.0
Merged-chr7-125583458-1	chr7	125582958	125583958	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19971.0	NM_021887	60504.0	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	9.72	11.52	23.12	11.47	9.33	16.88	11.62	11.5	10.62
Merged-chr11-88012871-1	chr11	88012371	88013371	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	-14573.0	NM_001168471	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	4.58	0.92	0.0	1.35	1.4	0.8	2.11	0.0	0.0
Merged-chr6-32539279-1	chr6	32538779	32539779	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	28138.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	1.14	5.53	4.62	7.42	1.4	1.61	7.39	2.65	6.87
Merged-chr8-94177840-1	chr8	94177340	94178340	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1249.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	20.02	15.21	12.95	20.92	12.13	16.08	14.79	19.9	12.49
Merged-chr15-56696147-1	chr15	56695647	56696647	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1601.0	NM_008216	15117.0	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	4.0	2.3	3.7	1.35	0.47	0.0	2.11	2.65	1.25
Merged-chr4-141571425-1	chr4	141570925	141571925	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25263.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	4.0	5.53	1.85	2.7	3.73	0.8	4.22	1.33	1.87
Merged-chr11-84613245-1	chr11	84612745	84613745	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	87585.0	NR_038057	78365.0	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	1.14	2.76	5.55	7.42	1.4	0.0	4.22	2.65	0.0
Merged-chr4-114908297-1	chr4	114907797	114908797	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_030721)	promoter-TSS (NR_030721)	601.0	NM_008593	17301.0	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	6.86	4.61	1.85	2.02	2.33	2.41	15.84	1.33	9.37
Merged-chr1-9903139-1	chr1	9902639	9903639	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177547)	TTS (NM_177547)	-5499.0	NM_177722	240697.0	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	2.86	4.15	7.4	2.7	1.87	4.02	4.22	2.21	4.37
Merged-chr15-36152137-1	chr15	36151637	36152637	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081253, exon 4 of 5)	exon (NM_001081253, exon 4 of 5)	-11737.0	NM_001195748	626596.0	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	2.86	1.84	0.0	2.02	1.87	1.61	3.17	3.54	3.75
Merged-chr17-10727893-1	chr17	10727393	10728393	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	112298.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	4.0	6.45	3.7	5.4	3.73	0.0	2.11	3.98	5.0
Merged-chr15-50784272-1	chr15	50783772	50784772	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	104777.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.58	5.07	2.77	7.42	2.8	3.22	8.45	2.65	2.5
Merged-chr17-33941383-1	chr17	33940883	33941883	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020603, intron 3 of 14)	intron (NM_020603, intron 3 of 14)	660.0	NM_020603	57315.0	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	45.19	41.01	57.35	43.18	30.32	49.83	32.74	22.55	24.98
Merged-chr11-51615345-1	chr11	51614845	51615845	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4428.0	NM_026631	52530.0	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	112.69	139.62	118.39	123.47	148.35	109.32	140.47	143.26	91.18
Merged-chr4-55118046-1	chr4	55117546	55118546	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	170101.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.57	5.99	2.77	4.05	0.47	3.22	5.28	0.0	0.0
Merged-chr2-102925121-1	chr2	102924621	102925621	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23456.0	NM_001039150	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	18.88	6.45	13.87	41.16	25.66	36.97	12.67	9.73	11.87
Merged-chr2-167633137-1	chr2	167632637	167633637	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_023230	66589.0	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	88.1	125.79	86.02	63.42	68.11	54.66	98.23	129.11	58.08
Merged-chr3-9714186-1	chr3	9713686	9714686	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 2 of 7)	intron (NM_053182, intron 2 of 7)	-104101.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	7.44	11.52	7.4	8.77	11.2	20.9	13.73	14.59	13.12
Merged-chr12-101959405-1	chr12	101958905	101959905	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1162.0	NM_001167914	110616.0	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	59.49	60.36	27.75	36.43	43.39	38.58	57.03	50.85	34.97
Merged-chr3-55333758-1	chr3	55333258	55334258	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357475, intron 3 of 16)	intron (NM_001357475, intron 3 of 16)	91394.0	NM_001357466	13175.0	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	2.86	4.15	6.47	4.72	1.87	3.22	12.67	3.1	2.5
Merged-chr16-44332681-1	chr16	44332181	44333181	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001159419, exon 1 of 26)	5' UTR (NM_001159419, exon 1 of 26)	157.0	NM_198034	320007.0	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	5.15	2.76	0.0	6.75	2.33	1.61	8.45	3.98	6.25
Merged-chr11-77795345-1	chr11	77794845	77795845	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-5953.0	NM_001291214	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	5.72	7.83	7.4	14.84	5.6	8.84	12.67	0.88	8.74
Merged-chr11-115278038-1	chr11	115277538	115278538	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1069.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	101.25	135.47	74.92	110.65	133.42	109.32	175.33	225.51	65.58
Merged-chr11-116027434-1	chr11	116026934	116027934	+	605.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2882.0	NM_001286006	217331.0	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Unkh|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	278.59	213.8	167.42	325.21	244.45	163.97	313.69	412.1	175.49
Merged-chr15-25692477-1	chr15	25691977	25692977	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019472, intron 2 of 40)	PB1D10|SINE|Alu	-60729.0	NM_001353142	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.43	6.45	1.85	0.67	1.4	1.61	3.17	2.21	1.25
Merged-chr5-72863642-1	chr5	72863142	72864142	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	4806.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	4.58	4.15	0.0	4.05	2.33	3.22	1.06	2.21	3.75
Merged-chr15-84617105-1	chr15	84616605	84617605	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR41A2|LTR|ERV1	-46101.0	NM_001346662	109270.0	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.0	1.84	0.0	4.05	2.33	1.61	0.0	0.0	1.25
Merged-chr14-24245563-1	chr14	24245063	24246063	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_027726, exon 1 of 31)	5' UTR (NM_027726, exon 1 of 31)	357.0	NM_001163513	71228.0	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	6.29	2.3	11.1	8.1	7.93	1.61	2.11	0.44	3.75
Merged-chr2-163601940-1	chr2	163601440	163602440	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181734)	promoter-TSS (NM_181734)	-374.0	NM_181734	76080.0	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	100.11	91.24	74.0	121.45	81.64	67.52	103.51	74.73	42.47
Merged-chr18-38393757-1	chr18	38393257	38394257	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER33|DNA|hAT-Charlie	-25150.0	NM_022996	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	6.29	15.67	25.9	12.14	7.46	12.86	7.39	14.59	13.74
Merged-chr9-105804075-1	chr9	105803575	105804575	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001102607, intron 1 of 36)	ID_B1|SINE|B4	5573.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	3.43	1.38	1.85	6.75	3.73	4.82	1.06	0.88	1.25
Merged-chr4-148760375-2	chr4	148759876	148760876	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD3|LINE|L1	-44016.0	NM_001159344	69743.0	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	9.15	6.91	7.4	0.67	2.33	3.22	2.11	1.33	5.0
Merged-chr2-70092885-1	chr2	70092385	70093385	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177376, intron 2 of 34)	MLT2B1|LTR|ERVL	53759.0	NM_177376	329421.0	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	4.58	5.99	0.0	4.72	6.53	9.65	1.06	8.4	3.75
Merged-chr11-101604696-1	chr11	101604196	101605196	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6004.0	NM_001256318	666331.0	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	4.58	2.76	7.4	4.72	6.06	8.84	9.51	2.65	2.5
Merged-chr4-63897363-1	chr4	63896863	63897863	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36079.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	10.3	3.23	4.62	4.72	5.13	3.22	4.22	5.31	1.25
Merged-chr7-141578550-1	chr7	141578050	141579050	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	ORR1B1|LTR|ERVL-MaLR	16370.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	21.17	24.88	24.05	37.78	19.13	16.08	27.46	29.18	12.49
Merged-chr17-45751604-1	chr17	45751104	45752104	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	17098.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	9.15	5.99	1.85	6.75	5.6	5.63	10.56	5.75	2.5
Merged-chr13-113417724-1	chr13	113417224	113418224	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85120.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	132.72	104.14	73.07	89.74	83.97	82.79	79.21	87.99	69.32
Merged-chr10-68141008-3	chr10	68140496	68141496	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	137730.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	40.04	29.95	23.12	47.9	34.06	36.97	39.08	19.01	23.73
Merged-chr16-90045789-1	chr16	90045289	90046289	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-71090.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	5.72	5.53	6.47	11.47	10.73	12.86	7.39	4.42	6.25
Merged-chr13-51737151-1	chr13	51736651	51737651	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281880, intron 2 of 16)	MIRb|SINE|MIR	56596.0	NM_001281880	20354.0	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	6.86	13.82	8.32	18.89	9.8	10.45	10.56	4.86	3.75
Merged-chr15-25332321-1	chr15	25331821	25332821	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	81443.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.15	3.69	1.85	5.4	5.13	3.22	11.62	13.71	7.49
Merged-chr17-46773981-1	chr17	46773481	46774481	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_025966)	TTS (NM_025966)	1346.0	NM_025966	67101.0	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	17.16	19.35	33.3	16.19	9.8	20.09	19.01	8.4	19.36
Merged-chr17-83058065-1	chr17	83057565	83058565	+	605.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045094, intron 2 of 3)	intron (NR_045094, intron 2 of 3)	20160.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	5.15	3.69	9.25	2.7	4.67	1.61	4.22	1.33	2.5
Merged-chr1-39505936-1	chr1	39505436	39506436	+	605.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27181.0	NM_001357521	54610.0	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	4.58	4.15	1.85	7.42	1.87	3.22	4.22	3.1	3.75
Merged-chr6-129033618-3	chr6	129033120	129034120	+	604.888916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12281.0	NR_024263	232408.0	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	9.72	5.53	0.0	4.05	5.6	1.61	5.28	1.33	0.0
Merged-chr10-116515319-3	chr10	116514815	116515815	+	604.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037848, intron 4 of 4)	intron (NM_001037848, intron 4 of 4)	12634.0	NM_001359253	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.86	11.52	1.85	3.37	7.93	12.06	2.11	6.19	9.37
Merged-chr5-36811608-2	chr5	36811130	36812130	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008550, intron 15 of 18)	intron (NM_008550, intron 15 of 18)	-14876.0	NM_026242	67568.0	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	6.86	3.23	7.4	2.02	0.0	1.61	3.17	3.1	3.12
Merged-chr9-22051946-2	chr9	22051429	22052429	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010487)	promoter-TSS (NM_010487)	94.0	NM_010487	15571.0	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV like RNA binding protein 3	protein-coding	1.72	0.46	0.0	3.37	0.47	3.22	3.17	0.0	0.0
Merged-chr5-21514960-2	chr5	21514461	21515461	+	604.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199632, intron 17 of 20)	ID_B1|SINE|B4	-28566.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	17.16	15.67	24.97	12.14	6.53	12.86	23.24	15.03	16.86
Merged-chr8-11253709-2	chr8	11253226	11254226	+	604.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 2 of 51)	intron (NM_009931, intron 2 of 51)	-59079.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.86	4.15	5.55	2.7	1.87	0.0	2.11	3.1	3.75
Merged-chr4-83288776-1	chr4	83288276	83289276	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 2 of 19)	ORR1D2|LTR|ERVL-MaLR	35413.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	9.72	5.53	11.1	6.07	7.0	3.22	3.17	3.1	4.37
Merged-chr14-51247586-1	chr14	51247086	51248086	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8526.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	12.59	11.52	5.55	11.47	12.6	12.06	5.28	3.54	2.5
Merged-chr8-34963233-1	chr8	34962733	34963733	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	2457.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	14.87	10.14	6.47	9.45	10.26	5.63	5.28	7.07	6.25
Merged-chr15-74938835-1	chr15	74938335	74939335	+	604.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16216.0	NM_001164039	17069.0	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	135.58	145.15	86.95	105.93	94.7	71.54	66.54	75.17	31.23
Merged-chr11-105474544-2	chr11	105474059	105475059	+	604.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17824.0	NM_001039242	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	20.02	35.94	27.75	22.94	20.06	13.66	20.07	15.92	11.87
Merged-chrX-159837598-2	chrX	159837085	159838085	+	604.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021389, intron 5 of 16)	intron (NM_021389, intron 5 of 16)	-2883.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	7.44	5.53	3.7	3.37	4.2	3.22	6.34	7.96	11.87
Merged-chr2-119106788-2	chr2	119106276	119107276	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-6041.0	NM_011234	19361.0	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	6.29	4.15	4.62	12.14	7.0	4.02	4.22	6.19	1.25
Merged-chr4-21679213-1	chr4	21678713	21679713	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080771, exon 4 of 4)	exon (NM_001080771, exon 4 of 4)	6750.0	NM_001080771	230025.0	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0.0	0.46	3.7	3.37	0.0	0.0	3.17	0.0	1.25
Merged-chr16-55888018-3	chr16	55887527	55888527	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134457, intron 2 of 5)	intron (NM_001134457, intron 2 of 5)	7252.0	NM_001134457	385658.0	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	4.58	7.37	7.4	7.42	6.53	8.04	13.73	9.73	5.62
Merged-chr8-123360785-1	chr8	123360285	123361285	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172287, intron 9 of 14)	intron (NM_172287, intron 9 of 14)	-12926.0	NM_001359076	66855.0	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	10.3	7.37	1.85	9.45	8.86	6.43	28.52	15.92	0.0
Merged-chr8-83994382-1	chr8	83993882	83994882	+	604.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008854, intron 8 of 9)	B1_Mur4|SINE|Alu	-3290.0	NM_001081415	666704.0	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	10.3	11.06	12.95	8.1	6.06	10.45	13.73	5.75	11.24
Merged-chr6-53286410-2	chr6	53285929	53286929	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001327821)	promoter-TSS (NM_001327821)	-874.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	17.73	6.91	5.55	19.57	10.73	12.06	10.56	1.33	1.25
Merged-chr2-30196842-2	chr2	30196338	30197338	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356475, intron 1 of 13)	intron (NM_001356475, intron 1 of 13)	9009.0	NM_001356475	70266.0	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	17.73	6.45	4.62	20.24	14.0	14.47	20.07	10.17	15.61
Merged-chr7-140903416-1	chr7	140902916	140903916	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2648.0	NR_015583	212965.0	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	4.0	2.3	7.4	4.72	3.27	3.22	3.17	1.77	5.0
Merged-chr5-81021492-1	chr5	81020992	81021992	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198702)	promoter-TSS (NM_198702)	-101.0	NM_198702	319387.0	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	8.58	10.14	9.25	6.07	4.67	7.23	7.39	4.86	2.5
Merged-chr13-46701706-1	chr13	46701206	46702206	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175749, exon 12 of 22)	exon (NM_175749, exon 12 of 22)	26143.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	2.29	10.6	3.7	4.72	7.0	14.47	8.45	7.52	6.25
Merged-chr15-103550162-1	chr15	103549662	103550662	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-12170.0	NM_021391	58200.0	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	16.02	13.36	12.95	17.54	21.93	25.72	15.84	8.84	13.74
Merged-chr2-28180269-2	chr2	28179763	28180763	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR24|LTR|ERV1	-12830.0	NM_001038613	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	6.86	6.45	2.77	6.07	3.73	4.82	2.11	4.42	1.87
Merged-chr13-77005819-1	chr13	77005319	77006319	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 17 of 20)	Lx8b|LINE|L1	129649.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	1.72	2.3	11.1	2.02	1.4	2.41	0.0	2.21	2.5
Merged-chr6-125074131-1	chr6	125073631	125074631	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163268, intron 1 of 1)	intron (NM_001163268, intron 1 of 1)	2854.0	NM_001163268	381810.0	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	3.43	3.23	0.0	7.42	2.8	3.22	1.06	1.77	5.0
Merged-chr2-66141099-1	chr2	66140599	66141599	+	604.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16306.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	6.86	2.76	5.55	2.02	0.93	1.61	4.22	5.75	3.75
Merged-chr5-21676141-2	chr5	21675635	21676635	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359964, intron 2 of 4)	intron (NM_001359964, intron 2 of 4)	25261.0	NM_001359964	242864.0	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	5.72	2.76	1.85	5.4	2.8	3.22	1.06	3.1	1.25
Merged-chr3-32616401-1	chr3	32615901	32616901	+	604.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001348062)	promoter-TSS (NM_001348062)	189.0	NM_001348104	14696.0	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	9.15	6.91	14.8	5.4	2.8	4.82	3.17	1.77	3.12
Merged-chr14-122474361-1	chr14	122473861	122474861	+	604.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045046, intron 2 of 4)	CpG	838.0	NR_045046	69248.0	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	1.72	0.92	1.85	2.7	0.93	1.61	1.06	1.33	2.5
Merged-chr14-54569189-2	chr14	54568695	54569695	+	604.400024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010590, intron 7 of 7)	intron (NM_010590, intron 7 of 7)	8466.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	4.58	4.61	1.85	6.75	0.93	2.41	0.0	0.44	3.75
Merged-chr3-104030980-2	chr3	104030493	104031493	+	604.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133853, intron 15 of 21)	intron (NM_133853, intron 15 of 21)	-62677.0	NR_030676	100125931.0	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	3.43	5.99	0.0	4.72	2.8	6.43	5.28	3.54	5.62
Merged-chr13-93990483-1	chr13	93989983	93990983	+	604.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67313.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	4.58	6.91	5.55	7.42	5.13	4.82	5.28	3.98	1.25
Merged-chr3-34035001-1	chr3	34034501	34035501	+	604.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113189, intron 1 of 16)	intron (NM_001113189, intron 1 of 16)	14922.0	NM_001113189	14359.0	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	38.9	55.29	43.47	39.81	37.79	49.03	38.02	46.87	43.09
Merged-chr2-58485210-3	chr2	58484722	58485722	+	604.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	76188.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	8.01	7.83	5.55	4.05	3.27	1.61	1.06	3.98	1.25
Merged-chrX-135797356-3	chrX	135796840	135797840	+	604.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026081, intron 6 of 10)	intron (NM_026081, intron 6 of 10)	-11123.0	NR_035497	100316820.0		NR_035497	ENSMUSG00000088464	Mir1970	mmu-mir-1970	microRNA 1970	ncRNA	1.72	0.92	0.0	0.0	0.47	0.0	1.06	0.0	0.0
Merged-chr15-66899861-3	chr15	66899338	66900338	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	8445.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	2.86	1.84	0.0	2.7	2.8	1.61	1.06	0.44	2.5
Merged-chr9-70783419-2	chr9	70782913	70783913	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC5|LINE|L1	104431.0	NM_007399	11487.0	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	31.46	23.04	20.35	31.04	24.72	16.88	13.73	19.9	8.12
Merged-chr7-96408838-2	chr7	96408333	96409333	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011858, intron 2 of 32)	intron (NM_011858, intron 2 of 32)	-66869.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	29.75	22.58	12.95	14.17	17.26	3.22	2.11	2.21	1.25
Merged-chr14-76051396-1	chr14	76050896	76051896	+	604.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-40531.0	NM_026816	68705.0	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	5.72	3.23	3.7	2.7	4.67	4.82	6.34	5.75	5.0
Merged-chr5-146804556-2	chr5	146804039	146805039	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-9583.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	101.83	94.92	61.97	101.21	76.51	96.45	106.67	121.15	76.19
Merged-chr4-22384077-2	chr4	22383583	22384583	+	604.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172988, intron 3 of 8)	Lx7|LINE|L1	26540.0	NR_104380	269514.0	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	8.58	12.9	18.5	13.49	8.4	10.45	10.56	10.17	14.99
Merged-chr13-54824410-2	chr13	54823885	54824885	+	604.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34980.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	32.04	35.48	48.1	35.09	27.52	53.05	35.91	35.37	21.86
Merged-chr7-127213545-3	chr7	127213078	127214078	+	604.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_017461)	TTS (NM_017461)	1970.0	NM_016754	17907.0	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	6.29	6.91	7.4	3.37	3.27	4.82	10.56	1.77	5.62
Merged-chr12-102422793-1	chr12	102422293	102423293	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011175, intron 2 of 13)	L1MB7|LINE|L1	17020.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	21.74	40.09	35.15	37.11	41.52	65.11	55.98	34.93	25.61
Merged-chr8-70866856-1	chr8	70866356	70867356	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6634.0	NM_026964	234388.0	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	7.44	8.75	3.7	7.42	1.87	0.8	8.45	3.1	0.0
Merged-chr13-59798549-1	chr13	59798049	59799049	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153538, intron 14 of 27)	intron (NM_153538, intron 14 of 27)	24598.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	7.44	1.84	3.7	5.4	3.73	3.22	5.28	1.33	8.12
Merged-chr5-127616554-1	chr5	127616054	127617054	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133895, intron 1 of 7)	intron (NM_133895, intron 1 of 7)	838.0	NM_133895	100561.0	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	156.17	186.62	188.69	176.1	158.61	220.24	209.12	174.21	151.14
Merged-chr1-60857774-2	chr1	60857275	60858275	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51250.0	NM_009843	12477.0	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.58	6.91	3.7	2.02	7.93	4.82	5.28	5.31	3.75
Merged-chr5-92205457-1	chr5	92204957	92205957	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9951.0	NR_033483	57425.0	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	6.86	10.6	5.55	4.72	3.27	0.0	6.34	4.86	11.24
Merged-chr11-110436842-1	chr11	110436342	110437342	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	(TG)n|Simple_repeat|Simple_repeat	37740.0	NM_001356353	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	12.01	3.23	6.47	2.02	1.4	4.02	15.84	7.52	5.0
Merged-chr15-62383017-1	chr15	62382517	62383517	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-163566.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	18.88	20.74	18.5	20.24	17.73	40.19	16.9	14.15	21.23
Merged-chr18-61077337-2	chr18	61076838	61077838	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 15 of 22)	intron (NM_008809, intron 15 of 22)	-28234.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	14.3	3.69	0.0	4.72	0.47	1.61	9.51	8.4	6.25
Merged-chr14-62354108-1	chr14	62353608	62354608	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026001, intron 5 of 10)	L1M2|LINE|L1	22040.0	NM_026001	67153.0	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	10.87	10.6	1.85	14.17	5.13	9.65	6.34	7.52	8.74
Merged-chr4-152159361-1	chr4	152158861	152159861	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301805, intron 1 of 4)	intron (NM_001301805, intron 1 of 4)	494.0	NM_008236	15206.0	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hes family bHLH transcription factor 2	protein-coding	2.29	5.07	5.55	3.37	0.93	1.61	3.17	3.54	8.12
Merged-chr6-145129656-1	chr6	145129156	145130156	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008511, intron 1 of 18)	B4|SINE|B4	7917.0	NM_008511	16970.0	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	8.01	5.07	12.02	8.77	5.13	12.86	12.67	12.38	5.0
Merged-chr2-109954124-1	chr2	109953624	109954624	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	36477.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	6.86	3.69	0.0	3.37	2.8	1.61	3.17	4.42	3.75
Merged-chr11-55204775-1	chr11	55204275	55205275	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	intron (NM_153139, intron 1 of 10)	435.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	100.68	104.14	65.67	105.93	134.82	119.76	143.64	106.12	44.34
Merged-chr7-135490718-1	chr7	135490218	135491218	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	37936.0	NM_178669	212070.0	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	10.87	2.3	3.7	2.02	1.87	1.61	1.06	0.0	1.25
Merged-chr7-99833278-1	chr7	99832778	99833778	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4861.0	NM_016720	50877.0	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	5.15	7.37	7.4	7.42	10.26	3.22	11.62	9.29	6.25
Merged-chr11-8625496-1	chr11	8624996	8625996	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	39039.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	9.72	9.22	10.17	8.1	11.66	12.06	7.39	3.1	10.62
Merged-chr3-144207728-1	chr3	144207228	144208228	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2473.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	5.72	8.75	3.7	6.75	3.27	8.04	9.51	7.96	14.36
Merged-chr9-56105308-1	chr9	56104808	56105808	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011193, intron 1 of 14)	intron (NM_011193, intron 1 of 14)	15332.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	14.3	10.6	18.5	17.54	12.13	26.53	25.35	11.05	18.74
Merged-chr15-85735433-2	chr15	85734947	85735947	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001113418)	promoter-TSS (NM_001113418)	-117.0	NM_001113418	19013.0	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	5.72	2.76	5.55	6.75	0.93	1.61	0.0	0.0	1.25
Merged-chr5-111139900-1	chr5	111139400	111140400	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	135756.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	16.59	17.51	14.8	20.92	19.13	13.66	6.34	3.98	9.37
Merged-chr4-139598584-1	chr4	139598084	139599084	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 1 of 8)	MLTR14|LTR|ERV1	23864.0	NM_001205173	212632.0	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	193.93	131.32	80.47	174.08	120.36	80.38	161.6	171.12	65.58
Merged-chr11-21033057-1	chr11	21032557	21033557	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-58267.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	58.35	58.52	55.5	48.58	29.39	55.46	100.34	72.52	51.84
Merged-chr10-70135895-1	chr10	70135395	70136395	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111121, intron 1 of 8)	B3A|SINE|B2	38774.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	1.14	3.23	3.7	3.37	4.67	4.02	0.0	0.88	0.0
Merged-chr14-73472470-1	chr14	73471970	73472970	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37579.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.0	1.38	0.0	8.1	4.2	8.04	4.22	10.61	3.75
Merged-chr7-116607998-1	chr7	116607498	116608498	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	103629.0	NM_001360375	53322.0	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	60.64	94.0	111.92	66.8	55.98	73.95	104.56	127.79	48.09
Merged-chr14-121358570-1	chr14	121358070	121359070	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145465, intron 1 of 10)	intron (NM_145465, intron 1 of 10)	20660.0	NM_145465	223255.0	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.58	5.99	1.85	6.75	8.86	8.04	8.45	3.98	8.12
Merged-chrX-50537296-1	chrX	50536796	50537796	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131207)	promoter-TSS (NR_131207)	-93.0	NR_131207	102639259.0	Mm.350898	NR_131207		Gm35612	-	predicted gene, 35612	ncRNA	6.29	4.15	1.85	5.4	6.06	15.27	11.62	10.17	1.25
Merged-chr6-122599911-2	chr6	122599419	122600419	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134391, intron 2 of 7)	RSINE1|SINE|B4	2525.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	116.7	152.98	79.55	99.18	66.71	68.32	166.88	217.99	114.29
Merged-chr1-171058524-1	chr1	171058024	171059024	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010188, intron 2 of 4)	intron (NM_010188, intron 2 of 4)	870.0	NM_001356511	14131.0	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	74.37	68.66	54.57	38.46	35.45	57.07	80.27	85.34	37.47
Merged-chrX-142391347-1	chrX	142390847	142391847	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_207625)	promoter-TSS (NM_207625)	-812.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	118.99	121.19	82.32	116.73	100.3	77.97	123.57	152.11	63.7
Merged-chr11-31550887-1	chr11	31550387	31551387	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	120975.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.57	0.46	5.55	0.67	4.2	3.22	3.17	1.77	5.0
Merged-chr16-91076402-1	chr16	91075902	91076902	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7257.0	NM_028905	74387.0	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	6.29	1.84	1.85	3.37	2.8	3.22	2.11	2.21	0.62
Merged-chr17-26069063-1	chr17	26068563	26069563	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162868, exon 1 of 14)	exon (NM_001162868, exon 1 of 14)	114.0	NM_001162868	215445.0	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	19.45	7.37	10.17	30.36	18.66	13.66	17.96	13.27	13.74
Merged-chr11-9433041-1	chr11	9432541	9433541	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178259, intron 37 of 61)	intron (NM_178259, intron 37 of 61)	241099.0	NM_178259	268379.0	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	5.72	0.46	0.0	4.05	6.53	3.22	2.11	1.33	0.0
Merged-chr13-56704184-1	chr13	56703684	56704684	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164042, intron 1 of 6)	intron (NM_001164042, intron 1 of 6)	516.0	NM_001164042	17129.0	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	68.07	43.31	15.72	62.75	32.19	33.76	45.42	41.12	21.23
Merged-chr12-80146664-1	chr12	80146164	80147164	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13820.0	NR_033514	69548.0	Mm.269712	NR_033514		2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	1.14	2.3	0.92	5.4	0.93	8.04	5.28	3.98	3.75
Merged-chr10-127587393-1	chr10	127586893	127587893	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 15 of 88)	intron (NM_008512, intron 15 of 88)	33755.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	62.35	36.86	32.37	61.4	36.85	74.75	42.25	36.26	24.36
Merged-chr6-48642980-1	chr6	48642480	48643480	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4254.0	NM_001077410	243374.0	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	3.43	5.53	0.0	1.35	2.8	0.0	0.0	2.21	5.0
Merged-chr3-123322323-1	chr3	123321823	123322823	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027135, intron 8 of 22)	intron (NM_027135, intron 8 of 22)	54827.0	NM_027135	69608.0	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	2.86	3.23	3.7	2.02	4.2	4.02	4.22	2.21	1.25
Merged-chr11-3347322-1	chr11	3346822	3347822	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034030, intron 9 of 11)	intron (NM_001034030, intron 9 of 11)	8819.0	NM_001034030	16886.0	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	4.58	4.15	2.77	4.05	2.33	0.0	2.11	0.88	2.5
Merged-chr14-65374252-1	chr14	65373752	65374752	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199029, intron 1 of 9)	intron (NM_199029, intron 1 of 9)	15576.0	NM_199029	380912.0	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	18.88	13.82	12.02	6.75	9.8	14.47	8.45	1.33	1.25
Merged-chr11-116390877-1	chr11	116390377	116391377	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	22155.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.0	0.0	0.0	4.72	1.87	1.61	8.45	7.96	17.49
Merged-chr16-33918866-1	chr16	33918366	33919366	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 9 of 14)	intron (NM_001145884, intron 9 of 14)	48172.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	11.44	9.22	15.72	12.14	6.06	12.06	12.67	6.63	18.11
Merged-chr13-113491109-1	chr13	113490609	113491609	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045501, intron 1 of 6)	intron (NR_045501, intron 1 of 6)	11735.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	50.34	34.1	10.17	64.77	34.06	42.6	85.55	61.9	27.48
Merged-chr1-152934142-1	chr1	152933642	152934642	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-20959.0	NM_175460	226518.0	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	4.0	7.83	1.85	2.7	5.13	4.82	7.39	3.54	5.0
Merged-chr14-47636710-1	chr14	47636210	47637210	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12601.0	NM_001347527	16709.0	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	4.0	3.69	3.7	0.0	2.8	1.61	3.17	2.65	0.62
Merged-chr13-21721393-1	chr13	21720893	21721893	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178200)	promoter-TSS (NM_178200)	-651.0	NM_178200	319186.0	Mm.277425	NM_178200	ENSMUSG00000114279	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	63.5	57.6	46.25	70.85	50.85	60.28	79.21	83.13	54.33
Merged-chr4-9629395-1	chr4	9628895	9629895	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001177856, exon 5 of 5)	3' UTR (NM_001177856, exon 5 of 5)	14322.0	NM_001177853	65973.0	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	5.72	11.06	2.77	14.17	5.6	4.82	14.79	4.86	2.5
Merged-chr4-102329230-2	chr4	102328736	102329736	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177983, intron 1 of 5)	intron (NM_001177983, intron 1 of 5)	74297.0	NM_019840	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	14.87	8.75	3.7	4.05	2.33	1.61	4.22	1.77	4.37
Merged-chr3-84938146-2	chr3	84937637	84938637	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-14074.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	7.44	8.75	2.77	8.77	7.93	8.04	6.34	6.63	5.0
Merged-chr10-99097524-1	chr10	99097024	99098024	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9558.0	NM_027740	382406.0	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	3.43	2.3	1.85	4.05	4.67	4.02	6.34	0.88	1.25
Merged-chr5-62764357-2	chr5	62763851	62764851	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	1826.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	87.52	113.81	64.75	85.69	79.77	47.42	106.67	146.8	74.32
Merged-chr6-125436881-2	chr6	125436383	125437383	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-56379.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.86	1.84	0.0	4.05	1.87	2.41	23.24	12.82	5.0
Merged-chr10-94317928-2	chr10	94317428	94318428	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	Lx2|LINE|L1	5979.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	5.72	3.69	5.55	4.72	3.73	1.61	7.39	3.98	5.0
Merged-chr5-140112080-1	chr5	140111580	140112580	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359025, intron 14 of 17)	L1MD|LINE|L1	62838.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	17.73	27.19	24.05	22.94	21.46	16.08	7.39	11.05	11.24
Merged-chr17-37185635-1	chr17	37185135	37186135	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8257.0	NM_023137	24108.0	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	10.3	4.61	3.7	5.4	5.6	0.0	5.28	4.86	5.0
Merged-chr17-28485076-1	chr17	28484576	28485576	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010220, intron 1 of 10)	intron (NM_010220, intron 1 of 10)	1073.0	NM_010220	14229.0	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	9.15	9.22	13.87	16.87	18.19	28.13	20.07	15.03	14.36
Merged-chr11-97098814-1	chr11	97098314	97099314	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019507, exon 6 of 6)	exon (NM_019507, exon 6 of 6)	16517.0	NM_019507	57765.0	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	2.86	0.0	9.25	1.35	5.13	0.8	1.06	6.63	6.25
Merged-chr2-167650296-1	chr2	167649796	167650796	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145538, intron 2 of 5)	intron (NM_145538, intron 2 of 5)	11248.0	NM_145538	407243.0	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	41.19	24.88	12.95	50.6	36.85	37.78	32.74	33.16	23.11
Merged-chr2-122110112-1	chr2	122109612	122110612	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145531, intron 4 of 39)	intron (NM_145531, intron 4 of 39)	8274.0	NM_145531	214585.0	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	SPG11, spatacsin vesicle trafficking associated	protein-coding	27.46	27.19	38.85	34.41	40.59	34.56	26.4	33.6	25.61
Merged-chr9-123984703-1	chr9	123984203	123985203	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-6295.0	NM_007718	12770.0	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	42.9	47.46	43.47	28.34	35.92	36.97	32.74	31.84	31.23
Merged-chr5-3348143-2	chr5	3347641	3348641	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	4248.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	3.43	4.15	5.55	4.05	5.13	1.61	7.39	1.33	1.87
Merged-chr10-22159380-1	chr10	22158880	22159880	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359809, intron 1 of 7)	intron (NM_001359809, intron 1 of 7)	771.0	NM_009016	19368.0	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	6.29	7.37	9.25	7.42	10.26	0.8	3.17	0.0	5.0
Merged-chr6-8036361-1	chr6	8035861	8036861	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	MLT1D|LTR|ERVL-MaLR	156256.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	22.31	17.05	19.42	2.02	2.8	3.22	4.22	3.1	1.25
Merged-chr15-59248622-1	chr15	59248122	59249122	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58326.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	1.72	3.23	0.0	10.12	5.6	4.82	4.22	3.1	6.25
Merged-chr1-182413062-1	chr1	182412562	182413562	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173378, intron 1 of 17)	intron (NM_173378, intron 1 of 17)	3895.0	NM_173378	209456.0	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	9.15	7.37	2.77	14.17	6.06	8.04	13.73	5.31	9.99
Merged-chr11-31899238-1	chr11	31898738	31899738	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290678, intron 2 of 7)	intron (NM_001290678, intron 2 of 7)	28298.0	NM_026252	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	44.62	48.38	38.85	47.23	33.59	40.19	81.33	65.0	39.97
Merged-chr6-70837518-1	chr6	70837018	70838018	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6997.0	NM_010121	13666.0	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	3.43	1.84	5.55	3.37	2.33	1.61	2.11	1.77	0.0
Merged-chr11-16980781-1	chr11	16980281	16981281	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019549, intron 9 of 9)	intron (NM_019549, intron 9 of 9)	27937.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	16.59	13.82	12.95	6.75	9.33	14.47	5.28	11.94	18.11
Merged-chr1-134071082-2	chr1	134070573	134071573	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8082.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	7.44	3.69	0.0	4.72	0.93	3.22	3.17	1.33	5.0
Merged-chr2-122573831-1	chr2	122573331	122574331	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37446.0	NM_025961	67092.0	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	13.73	12.9	12.02	18.89	4.2	11.25	13.73	3.98	3.75
Merged-chr15-38635233-1	chr15	38634733	38635733	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26671.0	NM_025494	66335.0	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.0	3.69	3.7	4.72	5.6	1.61	1.06	1.77	3.75
Merged-chr15-38002397-1	chr15	38001897	38002897	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081359, exon 34 of 59)	exon (NM_001081359, exon 34 of 59)	-41342.0	NM_199476	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	2.86	5.53	1.85	10.8	4.2	1.61	7.39	7.52	0.62
Merged-chr18-39487111-1	chr18	39486611	39487611	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008173, exon 1 of 8)	exon (NM_008173, exon 1 of 8)	134.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	8.58	13.36	13.87	8.77	6.53	10.45	15.84	19.46	19.98
Merged-chr6-59020533-2	chr6	59020035	59021035	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153574, intron 1 of 17)	AmnSINE1|SINE|Deu	3967.0	NM_153574	58909.0	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.72	3.69	3.7	4.05	4.67	3.22	5.28	0.0	3.12
Merged-chr11-115691231-1	chr11	115690731	115691731	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313936, intron 2 of 5)	intron (NM_001313936, intron 2 of 5)	8303.0	NM_001313937	14784.0	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	161.32	186.62	85.1	183.52	171.21	129.41	250.32	259.55	86.81
Merged-chr4-3777244-1	chr4	3776744	3777744	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	58411.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	7.44	12.44	15.72	5.4	9.33	10.45	9.51	10.17	12.49
Merged-chr16-58663203-1	chr16	58662703	58663703	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7005.0	NM_007757	12892.0	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	4.0	6.45	1.85	2.02	2.8	1.61	0.0	4.42	3.75
Merged-chr3-90508388-1	chr3	90507888	90508888	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293777, intron 1 of 5)	intron (NM_001293777, intron 1 of 5)	1110.0	NM_001293776	66511.0	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	10.87	12.44	22.2	14.84	8.4	8.04	21.12	17.69	7.49
Merged-chr4-40899782-1	chr4	40899282	40900282	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20274.0	NM_011463	20731.0	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	3.43	2.3	3.7	3.37	10.26	4.82	5.28	1.33	11.24
Merged-chr7-30414721-1	chr7	30414221	30415221	+	604.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011662, intron 3 of 4)	intron (NM_011662, intron 3 of 4)	933.0	NM_011662	22177.0	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	166.47	184.31	163.72	110.65	94.23	150.31	163.71	165.37	179.24
Merged-chr17-33972342-1	chr17	33971842	33972842	+	604.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	6449.0	NR_004446	630499.0	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	6.86	6.45	6.47	2.02	0.93	0.8	4.22	2.21	1.25
Merged-chr7-28452230-1	chr7	28451730	28452730	+	604.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001141921)	promoter-TSS (NM_001141921)	3.0	NR_030567	100124445.0		NR_030567	ENSMUSG00000077998	Mir466f-2	Mirn466f-2	microRNA 466f-2	ncRNA	3.43	2.76	5.55	7.42	1.4	4.02	0.0	0.44	1.25
Merged-chr5-122965694-2	chr5	122965198	122966198	+	603.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	23401.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	8.01	6.45	3.7	4.05	4.2	6.43	8.45	3.98	6.87
Merged-chr9-54676763-3	chr9	54676251	54677251	+	603.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14866.0	NM_053178	94180.0	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	4.58	2.3	4.62	1.35	2.33	3.22	3.17	3.54	3.75
Merged-chr13-55841489-2	chr13	55840992	55841992	+	603.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-10067.0	NM_011097	18740.0	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	5.15	3.23	0.0	3.37	0.93	6.43	1.06	1.33	0.0
Merged-chr18-61134787-3	chr18	61134324	61135324	+	603.694458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134134, intron 19 of 20)	intron (NM_134134, intron 19 of 20)	17356.0	NR_105949	102466212.0		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	10.3	5.53	12.95	9.45	3.27	15.27	13.73	8.84	7.49
Merged-chr8-121934643-1	chr8	121934143	121935143	+	603.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007608, intron 2 of 6)	intron (NM_007608, intron 2 of 6)	10269.0	NM_007608	12352.0	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	1.72	1.84	0.92	5.4	2.33	0.0	2.11	3.54	8.74
Merged-chr10-75795114-2	chr10	75794614	75795614	+	603.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008185, intron 2 of 4)	RLTR28|LTR|ERVL	2617.0	NM_001358778	14871.0	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	1.14	3.69	9.25	2.7	1.4	3.22	2.11	3.1	1.25
Merged-chr3-38561361-1	chr3	38560861	38561861	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76545.0	NM_001167883	99696.0	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	10.87	5.99	1.85	12.82	7.93	8.04	10.56	11.05	9.99
Merged-chr7-81573630-1	chr7	81573130	81574130	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004185, intron 1 of 9)	intron (NM_001004185, intron 1 of 9)	2338.0	NM_001004185	434204.0	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	20.02	16.59	12.02	19.57	13.06	12.86	8.45	11.94	11.87
Merged-chr18-4922821-2	chr18	4922330	4923330	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	110344.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	11.44	6.91	6.47	12.82	4.2	0.8	3.17	3.1	4.37
Merged-chr1-106020058-1	chr1	106019558	106020558	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 8 of 12)	intron (NM_001122675, intron 8 of 12)	29652.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	19.45	13.82	11.1	22.94	15.39	11.25	14.79	15.03	21.86
Merged-chrX-12153542-1	chrX	12153042	12154042	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	6804.0	NR_045434	71458.0	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	12.01	9.22	3.7	9.45	8.4	4.82	10.56	6.63	2.5
Merged-chr5-149336079-2	chr5	149335577	149336577	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	71073.0	NM_009663	11690.0	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	2.29	1.38	1.85	2.7	0.47	1.61	2.11	3.98	2.5
Merged-chr6-120190590-1	chr6	120190090	120191090	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016718, intron 1 of 3)	MIRb|SINE|MIR	-3233.0	NM_001347432	29862.0	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	15.45	6.91	2.77	10.12	9.33	15.27	6.34	7.07	5.62
Merged-chr13-99126228-2	chr13	99125715	99126715	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-38294.0	NR_045495	69603.0	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	2.86	2.76	1.85	4.72	0.93	4.82	3.17	1.77	3.75
Merged-chr10-60691090-1	chr10	60690590	60691590	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 1 of 68)	G-rich|Low_complexity|Low_complexity	5400.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	3.43	2.76	3.7	3.37	2.33	0.0	2.11	2.65	8.74
Merged-chr19-34382828-1	chr19	34382328	34383328	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	92169.0	NM_001146708	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	5.72	6.91	3.7	12.14	9.8	12.86	0.0	2.21	2.5
Merged-chr1-45926618-1	chr1	45926118	45927118	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1024.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	42.9	49.3	55.5	30.36	33.12	44.21	32.74	23.43	17.49
Merged-chr1-92895262-2	chr1	92894770	92895770	+	603.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347091, intron 4 of 17)	intron (NM_001347091, intron 4 of 17)	7636.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	2.86	0.46	0.0	1.35	0.47	1.61	5.28	0.44	2.5
Merged-chr6-88113293-1	chr6	88112793	88113793	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9035.0	NR_105795	102465196.0		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	4.58	1.84	13.87	2.02	0.47	0.0	1.06	0.88	3.75
Merged-chr2-167219532-2	chr2	167219032	167220032	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008968, intron 5 of 9)	intron (NM_008968, intron 5 of 9)	21005.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	5.72	7.37	0.0	4.72	1.4	3.22	2.11	0.88	7.49
Merged-chr2-174312323-1	chr2	174311823	174312823	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310085, intron 2 of 12)	intron (NM_001310085, intron 2 of 12)	14464.0	NM_001310085	14683.0	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	5.15	3.23	5.55	2.7	1.4	5.63	12.67	3.1	0.62
Merged-chr7-142435712-2	chr7	142435219	142436219	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285858, intron 1 of 8)	intron (NM_001285858, intron 1 of 8)	742.0	NM_018802	55925.0	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	2.29	4.61	1.85	3.37	2.8	3.22	4.22	1.77	1.87
Merged-chr5-45526498-1	chr5	45525998	45526998	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025895, exon 4 of 4)	3' UTR (NM_025895, exon 4 of 4)	6269.0	NM_025895	66999.0	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	1.72	2.3	0.0	4.05	0.47	1.61	5.28	6.19	2.5
Merged-chr7-127675249-1	chr7	127674749	127675749	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347652, intron 5 of 5)	LTR41B|LTR|ERVL	-33238.0	NR_030428	791073.0		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.0	5.53	0.92	2.7	0.93	1.61	1.06	3.1	3.75
Merged-chr11-76916716-1	chr11	76916216	76917216	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025655)	TTS (NM_025655)	12171.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	3.43	1.38	0.0	4.05	2.8	0.0	0.0	0.0	2.5
Merged-chr14-34662015-1	chr14	34661515	34662515	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8441.0	NR_029647	723831.0		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	3.43	5.53	2.77	13.49	7.0	6.43	8.45	3.54	9.37
Merged-chr7-128132292-2	chr7	128131827	128132827	+	603.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 5 of 29)	intron (NM_021334, intron 5 of 29)	2759.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	17.73	22.58	22.2	27.66	14.46	15.27	27.46	25.2	27.48
Merged-chr13-115230741-1	chr13	115230241	115231241	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128777.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	3.43	1.38	0.0	5.4	2.8	2.41	0.0	0.0	1.87
Merged-chr9-40731866-1	chr9	40731366	40732366	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	45902.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	101.83	136.39	70.3	132.92	102.17	88.42	3.17	2.21	2.5
Merged-chr7-116309752-1	chr7	116309252	116310252	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1376.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	5.15	1.84	1.85	7.42	4.67	4.02	2.11	3.54	3.75
Merged-chr2-165923195-1	chr2	165922695	165923695	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-38357.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	71.51	74.65	39.77	79.62	44.32	68.32	74.99	87.11	64.33
Merged-chr9-66878291-1	chr9	66877791	66878791	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	B2_Mm1t|SINE|B2	41414.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	86.38	114.74	63.82	148.44	160.95	81.99	61.26	76.05	55.58
Merged-chr11-118200543-2	chr11	118200043	118201043	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	L1MB3|LINE|L1	12199.0	NM_001112700	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	18.88	25.8	13.87	35.76	21.46	21.7	23.24	18.57	21.86
Merged-chr13-56614525-1	chr13	56614025	56615025	+	603.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155548, intron 2 of 16)	(TG)n|Simple_repeat|Simple_repeat	4939.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	26.89	40.09	33.3	22.27	17.26	51.44	41.19	34.05	26.85
Merged-chr2-27677694-1	chr2	27677194	27678194	+	603.400024	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	CpG	493.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	82.95	82.94	84.17	78.27	93.77	117.35	107.73	89.32	67.45
Merged-chr15-31452979-3	chr15	31452394	31453394	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	795.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	52.06	48.38	53.65	71.52	87.24	59.48	92.94	89.32	25.61
Merged-chr7-142373336-1	chr7	142372836	142373836	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347541, intron 1 of 2)	intron (NM_001347541, intron 1 of 2)	410.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	42.33	43.31	49.02	8.77	3.73	0.8	94.0	90.64	30.6
Merged-chr7-145047879-1	chr7	145047379	145048379	+	603.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107954.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	13.16	24.42	19.42	23.62	24.26	19.29	24.29	14.15	17.49
Merged-chr6-86456225-1	chr6	86455725	86456725	+	603.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001243742, intron 6 of 9)	B3|SINE|B2	17579.0	NM_001243741	232196.0	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	13.16	6.91	4.62	8.1	5.6	4.82	10.56	9.73	3.75
Merged-chr1-34579682-2	chr1	34579183	34580183	+	603.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_213727)	promoter-TSS (NM_213727)	-10.0	NM_213727	211383.0	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	4.58	0.46	2.77	4.05	2.33	3.22	2.11	0.0	1.25
Merged-chr2-142859720-2	chr2	142859215	142860215	+	603.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	41749.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	5.15	3.69	4.62	10.8	5.13	4.82	8.45	7.96	6.25
Merged-chr2-84064549-2	chr2	84064046	84065046	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-123320.0	NM_027964	71861.0	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	4.58	4.15	3.7	6.07	2.33	1.61	6.34	3.98	0.0
Merged-chr16-97536874-1	chr16	97536374	97537374	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013606, intron 1 of 13)	RMER17C|LTR|ERVK	791.0	NM_013606	17858.0	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	57.21	41.01	58.27	55.33	43.85	45.82	50.7	34.05	25.61
Merged-chr4-86576513-1	chr4	86576013	86577013	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178376, exon 1 of 1)	exon (NM_178376, exon 1 of 1)	840.0	NM_178376	68441.0	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	38.9	27.19	17.57	41.16	35.45	26.53	39.08	42.45	17.49
Merged-chr15-50816711-1	chr15	50816211	50817211	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310485, intron 5 of 7)	intron (NM_001310485, intron 5 of 7)	72338.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	3.43	5.99	5.55	7.42	15.39	18.49	8.45	16.8	5.62
Merged-chr5-147541899-1	chr5	147541399	147542399	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 16 of 18)	intron (NM_028291, intron 16 of 18)	111743.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	75.51	90.31	72.15	78.94	86.3	90.02	103.51	103.47	64.95
Merged-chr15-50402780-1	chr15	50402280	50403280	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	486269.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.58	3.69	9.25	3.37	5.13	7.23	2.11	3.98	2.5
Merged-chr3-96564419-1	chr3	96563919	96564919	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040409, intron 1 of 3)	intron (NR_040409, intron 1 of 3)	2382.0	NR_040409	100038464.0	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	-	predicted gene 15441	ncRNA	97.82	67.27	82.32	84.34	71.84	94.85	101.39	94.18	54.33
Merged-chr10-37194720-1	chr10	37194220	37195220	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-55794.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	221.38	262.19	191.47	234.8	214.13	225.06	199.62	224.18	156.76
Merged-chr2-49727868-1	chr2	49727368	49728368	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008449, intron 12 of 25)	intron (NM_008449, intron 12 of 25)	-59818.0	NM_027990	71897.0	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	1.72	1.84	6.47	3.37	2.8	4.82	5.28	1.33	4.37
Merged-chr4-101419341-1	chr4	101418841	101419841	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177602)	promoter-TSS (NM_001177602)	20.0	NM_001177604	11639.0	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	10.87	1.84	1.85	5.4	2.33	5.63	1.06	0.88	5.0
Merged-chr7-19477251-2	chr7	19476755	19477755	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18761.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	4.0	3.23	0.92	2.7	1.87	4.82	7.39	3.1	13.12
Merged-chr14-33172014-1	chr14	33171514	33172514	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146022, intron 1 of 58)	intron (NM_001146022, intron 1 of 58)	13052.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	9.72	13.36	11.1	13.49	6.53	11.25	8.45	7.07	12.49
Merged-chr1-34434078-1	chr1	34433578	34434578	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_039562)	promoter-TSS (NR_039562)	-879.0	NR_039562	100628580.0		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	84.09	107.36	62.9	84.34	72.78	78.77	108.79	138.84	84.31
Merged-chrX-101746616-1	chrX	101746116	101747116	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR40|LTR|ERVK	-12469.0	NM_009910	12766.0	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	5.72	11.06	11.1	11.47	5.13	1.61	6.34	10.17	13.74
Merged-chr12-108991639-1	chr12	108991139	108992139	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177602, intron 3 of 6)	intron (NM_177602, intron 3 of 6)	76578.0	NM_001163175	380785.0	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	8.58	2.3	1.85	8.1	1.87	4.82	9.51	3.54	4.37
Merged-chr6-88041364-1	chr6	88040864	88041864	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293652, intron 1 of 7)	intron (NM_001293652, intron 1 of 7)	3653.0	NM_001293653	19349.0	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	19.45	15.67	11.1	16.87	11.2	9.65	14.79	8.4	12.49
Merged-chr5-28038410-1	chr5	28037910	28038910	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33002.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	25.74	34.56	27.75	40.48	47.12	49.83	25.35	47.75	18.74
Merged-chr2-32854371-1	chr2	32853871	32854871	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7134.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	1.72	2.3	0.0	6.07	2.33	0.0	2.11	0.44	3.75
Merged-chr2-10825701-1	chr2	10825201	10826201	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	307546.0	NR_035418	100316831.0		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	5.72	5.53	11.1	4.72	3.27	3.22	4.22	3.98	2.5
Merged-chr9-38815610-1	chr9	38815110	38816110	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146781, exon 1 of 1)	exon (NM_146781, exon 1 of 1)	202.0	NM_146781	258777.0	Mm.223208	NM_146781	ENSMUSG00000043911	Olfr922	MOR161-3	olfactory receptor 922	protein-coding	6.29	5.07	3.7	4.05	4.2	1.61	2.11	9.29	9.99
Merged-chr11-96760190-1	chr11	96759690	96760690	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001177899)	TTS (NM_001177899)	17365.0	NM_028965	74479.0	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	8.01	2.3	3.7	7.42	2.33	4.82	3.17	2.65	3.75
Merged-chr10-24595624-1	chr10	24595124	24596124	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010217, exon 1 of 5)	5' UTR (NM_010217, exon 1 of 5)	182.0	NM_010217	14219.0	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.86	0.92	1.85	4.05	2.8	0.0	1.06	0.0	5.0
Merged-chr13-114459021-2	chr13	114458463	114459463	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001301373)	promoter-TSS (NM_001301373)	-12.0	NM_008046	14313.0	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	4.58	1.38	0.0	2.02	1.4	1.61	3.17	0.88	0.0
Merged-chr15-99652447-1	chr15	99651947	99652947	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012025)	promoter-TSS (NM_012025)	-791.0	NM_001253809	26934.0	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	11.44	11.98	33.3	20.92	12.13	8.04	13.73	20.78	9.99
Merged-chr2-43795050-2	chr2	43794553	43795553	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301831, intron 2 of 14)	intron (NM_001301831, intron 2 of 14)	46229.0	NM_001301831	76117.0	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	53.77	53.45	27.75	49.25	44.32	40.99	51.75	53.06	40.59
Merged-chrX-7645519-1	chrX	7645019	7646019	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009305, intron 5 of 6)	intron (NM_009305, intron 5 of 6)	6939.0	NM_009305	20977.0	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	4.0	3.23	3.7	4.72	0.47	6.43	6.34	4.42	1.25
Merged-chr8-69273276-1	chr8	69272776	69273776	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172491, intron 1 of 5)	intron (NM_172491, intron 1 of 5)	2196.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	5.15	5.99	3.7	22.94	23.33	15.27	15.84	12.82	7.49
Merged-chr11-109424648-3	chr11	109424139	109425139	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC4a|LINE|L1	-1307.0	NM_025275	13929.0	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	17.16	20.74	8.32	20.92	14.0	13.66	26.4	13.27	8.12
Merged-chr1-153332566-1	chr1	153332066	153333066	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010683, exon 1 of 28)	5' UTR (NM_010683, exon 1 of 28)	220.0	NM_010683	226519.0	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	7.44	2.3	0.0	8.1	2.8	3.22	2.11	1.33	2.5
Merged-chrX-71051661-1	chrX	71051161	71052161	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	1405.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	55.49	40.09	42.55	42.51	23.33	29.74	33.8	37.58	29.98
Merged-chr5-25100347-1	chr5	25099847	25100847	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027851)	promoter-TSS (NR_027851)	295.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	27.46	14.28	15.72	83.66	62.98	90.02	29.57	16.36	20.61
Merged-chr7-6475660-1	chr7	6475160	6476160	+	603.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146916)	TTS (NM_146916)	1548.0	NM_146916	258918.0	Mm.377748	NM_146916	ENSMUSG00000054938	Olfr1346	MOR103-6	olfactory receptor 1346	protein-coding	2.29	0.92	3.7	0.0	3.27	6.43	4.22	3.98	8.74
Merged-chr3-104219915-1	chr3	104219415	104220415	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001159354, exon 1 of 21)	exon (NM_001159354, exon 1 of 21)	491.0	NM_133853	99470.0	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	12.59	4.15	5.55	7.42	4.2	12.86	4.22	3.54	6.25
Merged-chr11-117242978-1	chr11	117242478	117243478	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113486, intron 2 of 11)	intron (NM_001113486, intron 2 of 11)	-23268.0	NM_001113487	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	8.01	7.83	2.77	25.64	18.66	11.25	15.84	7.52	3.75
Merged-chr4-132976188-1	chr4	132975688	132976688	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010208, intron 1 of 12)	intron (NM_010208, intron 1 of 12)	2093.0	NM_010208	14191.0	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	49.77	47.46	53.65	47.23	30.32	46.62	74.99	52.62	49.96
Merged-chr13-76844846-1	chr13	76844346	76845346	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	290622.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	4.58	5.53	2.77	5.4	3.73	3.22	3.17	2.65	0.0
Merged-chrX-107250595-1	chrX	107250095	107251095	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-5283.0	NM_001033251	213439.0	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	1.14	3.69	0.0	4.05	3.27	8.04	1.06	2.65	3.75
Merged-chr11-106329907-1	chr11	106329407	106330407	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133199, intron 14 of 23)	intron (NM_133199, intron 14 of 23)	-15345.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	1.14	4.15	0.92	14.17	4.2	1.61	14.79	3.1	5.0
Merged-chr1-132328581-1	chr1	132328081	132329081	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195025, intron 5 of 7)	intron (NM_001195025, intron 5 of 7)	12456.0	NM_028778	74137.0	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	34.32	45.62	62.9	20.24	25.19	32.96	39.08	49.52	38.1
Merged-chr1-175924066-1	chr1	175923566	175924566	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3737.0	NM_001290692	226720.0	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	7.44	0.92	0.0	2.02	2.8	4.02	2.11	1.77	0.62
Merged-chr14-58123080-1	chr14	58122580	58123580	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	50394.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.57	0.92	3.7	3.37	3.27	6.43	0.0	2.65	2.5
Merged-chr10-66911805-2	chr10	66911294	66912294	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_138560)	TTS (NR_138560)	8590.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	2.29	2.76	5.55	8.1	2.8	3.22	8.45	3.98	14.99
Merged-chr5-111119959-1	chr5	111119459	111120459	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	115815.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	4.58	7.37	12.02	5.4	10.26	8.04	1.06	1.77	3.75
Merged-chr13-56172130-1	chr13	56171630	56172630	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6755.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	20.59	21.66	24.97	15.52	16.79	18.49	11.62	6.19	6.87
Merged-chr15-100543059-2	chr15	100542548	100543548	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355497, intron 2 of 15)	IAPEY3-int|LTR|ERVK	8960.0	NM_033476	21422.0	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	37.76	36.4	14.8	15.52	20.99	6.43	27.46	13.27	8.74
Merged-chr5-53212996-1	chr5	53212496	53213496	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172710, intron 1 of 23)	CpG	456.0	NM_172710	231238.0	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	4.0	0.0	1.85	6.07	6.06	0.8	3.17	0.88	2.5
Merged-chr5-113012189-1	chr5	113011689	113012689	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	3349.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	10.87	12.44	22.2	15.52	9.33	10.45	8.45	3.1	6.25
Merged-chr13-94713637-1	chr13	94713137	94714137	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75306.0	NM_009321	21371.0	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	2.86	5.99	1.85	5.4	4.67	4.82	2.11	6.63	6.25
Merged-chr16-77020421-1	chr16	77019921	77020921	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	6352.0	NM_013918	30940.0	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	16.02	9.22	8.32	19.57	8.86	13.66	15.84	14.15	13.74
Merged-chr14-62839556-1	chr14	62839056	62840056	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1835.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	118.42	131.32	92.5	90.41	89.57	105.3	136.25	126.46	85.56
Merged-chr16-44009253-1	chr16	44008753	44009753	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359085, intron 7 of 16)	intron (NM_001359085, intron 7 of 16)	-4599.0	NR_037302	100499519.0		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	6.29	3.23	3.7	6.75	4.2	8.04	6.34	7.96	5.62
Merged-chr2-104134497-1	chr2	104133997	104134997	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11728.0	NM_026634	68243.0	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	3.43	2.3	1.85	5.4	3.73	6.43	0.0	1.77	2.5
Merged-chr12-5181761-1	chr12	5181261	5182261	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164493, intron 3 of 13)	intron (NM_001164493, intron 3 of 13)	193921.0	NM_001164493	208439.0	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	3.43	1.84	1.85	1.35	2.33	3.22	1.06	3.1	3.75
Merged-chr18-57957776-1	chr18	57957276	57958276	+	603.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	79098.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	5.15	6.91	9.25	4.05	1.87	6.43	7.39	6.19	14.36
Merged-chr11-116113581-1	chr11	116113081	116114081	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3346.0	NM_172570	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	37.76	26.26	18.5	2.02	0.93	1.61	6.34	1.77	8.74
Merged-chr2-61494651-1	chr2	61494151	61495151	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83935.0	NM_011529	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	4.0	0.92	0.0	2.7	0.47	4.82	3.17	2.21	2.5
Merged-chr11-77461246-1	chr11	77460746	77461746	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2667.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	8.58	5.07	4.62	7.42	1.87	9.65	4.22	2.65	3.75
Merged-chr9-85206094-1	chr9	85205594	85206594	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121030.0	NM_001160378	212943.0	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	2.86	5.99	1.85	5.4	1.87	1.61	5.28	1.33	1.25
Merged-chr13-45623949-2	chr13	45623447	45624447	+	603.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 5 of 6)	(ATG)n|Simple_repeat|Simple_repeat	116503.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	42.33	31.79	10.17	45.88	42.45	44.21	24.29	26.97	22.48
Merged-chr1-184484490-1	chr1	184483990	184484990	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73201.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	56.06	84.78	64.75	76.92	83.97	67.52	54.92	80.03	61.2
Merged-chr10-83448796-1	chr10	83448296	83449296	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85344.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.57	1.84	1.85	1.35	4.2	0.0	2.11	3.1	2.5
Merged-chr2-150608017-1	chr2	150607517	150608517	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356491, intron 1 of 9)	intron (NM_001356491, intron 1 of 9)	550.0	NM_001356491	71881.0	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	25.74	29.49	12.95	28.34	20.53	13.66	36.97	29.63	23.11
Merged-chr13-80902959-1	chr13	80902459	80903459	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16864.0	NR_153411	105171.0	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	1.14	3.69	5.55	4.72	8.86	2.41	2.11	3.1	6.25
Merged-chr9-64059498-1	chr9	64058998	64059998	+	603.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9669.0	NR_040713	68697.0	Mm.491042	NR_040713	ENSMUSG00000097036	1110036E04Rik	-	RIKEN cDNA 1110036E04 gene	ncRNA	3.43	6.91	3.7	6.75	1.87	8.84	5.28	6.63	5.0
Merged-chr11-75677979-2	chr11	75677445	75678445	+	602.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1314.0	NM_001277219	12928.0	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	5.15	5.99	5.55	12.14	7.46	7.23	16.9	5.31	21.23
Merged-chr11-113865845-2	chr11	113865349	113866349	+	602.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172800, intron 12 of 44)	intron (NM_172800, intron 12 of 44)	-114034.0	NM_001163346	56699.0	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	4.58	1.84	7.4	0.67	2.33	4.02	2.11	0.44	1.25
Merged-chrX-42450504-2	chrX	42450015	42451015	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52050.0	NM_011364	20400.0	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	2.86	3.69	3.7	0.67	0.47	3.22	0.0	1.77	2.5
Merged-chr1-74339327-2	chr1	74338846	74339846	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	6736.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	2.29	0.46	1.85	8.77	4.67	8.04	0.0	0.88	5.0
Merged-chr1-150373068-2	chr1	150372565	150373565	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357579, intron 11 of 13)	intron (NM_001357579, intron 11 of 13)	-19773.0	NM_133780	108989.0	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	8.01	5.53	7.4	11.47	5.6	8.04	6.34	10.61	5.0
Merged-chr17-64397603-2	chr17	64397166	64398166	+	602.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43140.0	NR_105848	102465228.0		NR_105848	ENSMUSG00000098984	Mir6420	Gm28007|mmu-mir-6420	microRNA 6420	ncRNA	6.86	5.07	0.0	6.75	5.13	4.82	6.34	5.75	2.5
Merged-chr19-16016315-2	chr19	16015803	16016803	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31228.0	NR_045355	100502653.0	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	24.03	29.03	21.27	24.96	7.46	25.72	45.42	33.16	24.98
Merged-chr4-108302338-2	chr4	108301891	108302891	+	602.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1301.0	NM_001033634	414872.0	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	31.46	19.81	19.42	20.92	20.53	43.4	25.35	26.09	17.49
Merged-chr19-17251636-2	chr19	17251111	17252111	+	602.700012	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	87894.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	61.21	58.98	56.42	34.41	39.65	49.83	136.25	126.9	79.94
Merged-chr1-59619609-3	chr1	59619109	59620109	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001013771, intron 13 of 19)	ORR1F|LTR|ERVL-MaLR	51225.0	NM_009460	22218.0	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	5.15	5.99	11.1	6.75	6.53	1.61	6.34	5.31	2.5
Merged-chr11-80382845-3	chr11	80382341	80383341	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011751)	promoter-TSS (NM_011751)	-438.0	NM_001130169	22680.0	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	211.09	218.41	132.27	211.19	152.08	133.43	192.23	206.05	138.02
Merged-chr5-64959703-3	chr5	64959211	64960211	+	602.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359180, intron 1 of 1)	intron (NM_001359180, intron 1 of 1)	385.0	NM_001359180	21899.0	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	375.27	399.04	207.19	322.51	382.54	208.98	346.43	519.55	237.32
Merged-chr1-106328074-1	chr1	106327574	106328574	+	602.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 4 of 16)	intron (NM_133821, intron 4 of 16)	156205.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	8.01	7.83	5.55	9.45	5.13	3.22	7.39	3.1	3.75
Merged-chr16-10767319-2	chr16	10766840	10767840	+	602.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18196.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	7.44	4.61	0.0	1.35	4.67	0.0	3.17	3.54	3.75
Merged-chr5-99341495-2	chr5	99340991	99341991	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	RMER17C|LTR|ERVK	-88564.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	100.68	122.11	85.1	98.51	81.17	130.21	134.14	119.39	105.55
Merged-chr2-33558491-2	chr2	33557985	33558985	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82026.0	NM_010725	16917.0	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	1.14	0.92	3.7	2.02	0.0	4.02	5.28	0.0	2.5
Merged-chr15-3251238-2	chr15	3250817	3251817	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19450.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	21.74	22.58	23.12	29.69	34.52	24.92	16.9	14.59	19.98
Merged-chr9-31131245-3	chr9	31130732	31131732	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011176, intron 1 of 18)	intron (NM_011176, intron 1 of 18)	567.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	10.3	3.69	15.72	5.4	4.67	3.22	8.45	7.96	5.0
Merged-chr14-64070872-2	chr14	64070360	64071360	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14550.0	NM_001081063	71037.0	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	2.29	2.76	0.92	2.02	1.4	0.8	3.17	2.65	5.0
Merged-chr1-173879026-1	chr1	173878526	173879526	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170853, intron 2 of 9)	intron (NM_001170853, intron 2 of 9)	1161.0	NM_001170853	100040462.0	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	72.65	128.1	33.3	229.4	256.11	114.94	111.96	137.07	49.96
Merged-chr5-24486257-2	chr5	24485732	24486732	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 9 of 15)	intron (NM_001359881, intron 9 of 15)	34055.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	4.0	5.07	0.0	4.72	6.06	1.61	2.11	0.88	6.25
Merged-chr2-177759264-1	chr2	177758764	177759764	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243903)	promoter-TSS (NM_001243903)	-24.0	NM_001243903	626802.0	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	-	predicted gene 14322	protein-coding	0.57	0.0	0.0	4.72	1.87	0.0	1.06	0.44	2.5
Merged-chr4-135351797-1	chr4	135351297	135352297	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016799, intron 1 of 17)	intron (NM_016799, intron 1 of 17)	1417.0	NM_016799	51796.0	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	33.18	41.47	16.65	14.17	19.59	15.27	34.85	23.88	20.61
Merged-chr10-20723269-2	chr10	20722754	20723754	+	602.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013875, intron 1 of 12)	intron (NM_013875, intron 1 of 12)	1824.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	37.18	46.08	25.9	56.68	32.66	36.97	52.81	58.81	27.48
Merged-chr12-83939497-1	chr12	83938997	83939997	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11111.0	NM_023633	71952.0	Mm.251483	NM_023633	ENSMUSG00000046791	Riox1	2410016O06Rik|MAPJD|NO66	ribosomal oxygenase 1	protein-coding	3.43	3.69	1.85	3.37	3.27	7.23	6.34	6.19	1.87
Merged-chr17-57030963-1	chr17	57030463	57031463	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010613, intron 1 of 17)	intron (NM_010613, intron 1 of 17)	544.0	NM_010613	16549.0	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	105.26	65.43	68.45	99.18	44.32	40.99	83.44	36.7	45.59
Merged-chr15-38469275-1	chr15	38468775	38469775	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21272.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	52.63	46.08	43.47	43.18	24.26	61.89	32.74	18.57	34.35
Merged-chr9-106675655-2	chr9	106675153	106676153	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104459, intron 2 of 4)	intron (NR_104459, intron 2 of 4)	10163.0	NM_011573	21767.0	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.0	0.92	4.62	3.37	0.93	0.8	2.11	1.33	3.75
Merged-chr4-134749450-2	chr4	134748978	134749978	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145554, intron 6 of 8)	intron (NM_145554, intron 6 of 8)	18526.0	NM_145554	100017.0	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	16.59	9.68	31.45	10.8	5.6	11.25	15.84	10.17	5.0
Merged-chr11-85706726-1	chr11	85706226	85707226	+	602.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045875, intron 2 of 5)	intron (NR_045875, intron 2 of 5)	13018.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	8.01	11.06	9.25	4.72	3.27	11.25	4.22	12.38	5.62
Merged-chr18-44607715-2	chr18	44607216	44608216	+	602.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-53949.0	NR_026853	626275.0	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	13.73	7.83	0.0	8.77	11.2	10.45	4.22	4.86	3.12
Merged-chr10-120189974-2	chr10	120189456	120190456	+	602.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359184, intron 1 of 11)	intron (NM_001359184, intron 1 of 11)	11641.0	NM_028679	73914.0	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	7.44	22.58	7.4	16.19	14.93	7.23	38.02	23.88	16.24
Merged-chr11-94410088-2	chr11	94409574	94410574	+	602.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009783, intron 35 of 35)	intron (NM_009783, intron 35 of 35)	-17098.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	2.86	1.84	0.0	13.49	3.73	8.84	6.34	6.63	4.37
Merged-chr19-5474782-3	chr19	5474291	5475291	+	602.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	56.0	NM_001164352	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	9.15	6.91	19.42	17.54	7.0	16.08	8.45	7.07	7.49
Merged-chr11-83191682-1	chr11	83191182	83192182	+	602.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011409, intron 1 of 2)	intron (NM_011409, intron 1 of 2)	352.0	NM_011409	20557.0	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	68.65	63.59	40.7	62.75	64.38	48.23	103.51	94.62	36.85
Merged-chr19-36922269-2	chr19	36921767	36922767	+	602.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2668.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	8.01	4.61	2.77	5.4	1.4	1.61	9.51	7.96	6.25
Merged-chr16-20671958-3	chr16	20671452	20672452	+	602.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001304432)	promoter-TSS (NM_001304432)	-775.0	NM_145941	208643.0	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	53.2	47.46	38.85	53.98	52.72	52.25	125.69	119.83	50.59
Merged-chr10-68705740-1	chr10	68705240	68706240	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18006.0	NM_177794	327766.0	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.86	1.38	7.4	2.7	1.4	3.22	6.34	4.86	4.37
Merged-chr8-34145887-2	chr8	34145389	34146389	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026609, intron 1 of 3)	intron (NM_026609, intron 1 of 3)	850.0	NM_026609	68192.0	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	57.78	49.76	37.92	48.58	33.59	23.31	53.87	65.44	28.1
Merged-chr18-20811958-1	chr18	20811458	20812458	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65554.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	6.86	5.53	0.0	2.7	1.4	4.82	9.51	4.86	5.0
Merged-chr4-40157939-2	chr4	40157430	40158430	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007386, intron 1 of 20)	intron (NM_007386, intron 1 of 20)	14665.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	6.86	5.07	9.25	3.37	3.27	4.82	5.28	6.19	4.37
Merged-chr5-74710254-1	chr5	74709754	74710754	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7351.0	NM_001159577	16924.0	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.0	1.84	0.92	6.75	2.8	0.8	0.0	1.77	0.0
Merged-chr4-103104133-1	chr4	103103633	103104633	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146254, intron 1 of 16)	intron (NM_146254, intron 1 of 16)	10166.0	NM_146254	242584.0	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	22.88	25.8	16.65	11.47	20.06	19.29	24.29	29.63	14.99
Merged-chr9-102841286-1	chr9	102840786	102841786	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284258, intron 1 of 13)	intron (NM_001284258, intron 1 of 13)	6366.0	NM_001284258	20187.0	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.0	1.84	1.85	5.4	5.6	3.22	3.17	0.44	2.5
Merged-chr8-117294133-1	chr8	117293633	117294633	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001163262, intron 1 of 20)	intron (NM_001163262, intron 1 of 20)	37114.0	NM_001163262	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	13.73	17.97	24.05	14.17	8.86	28.94	7.39	14.59	16.24
Merged-chr8-114442494-1	chr8	114441994	114442994	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019573, intron 1 of 8)	intron (NM_019573, intron 1 of 8)	2842.0	NM_019573	80707.0	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	4.0	3.23	0.0	2.7	1.4	3.22	2.11	5.75	3.12
Merged-chr2-28924097-1	chr2	28923597	28924597	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7429.0	NM_001355434	54422.0	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH like homeobox 1	protein-coding	5.15	1.38	0.0	6.07	0.93	1.61	4.22	0.44	2.5
Merged-chr2-19627749-1	chr2	19627249	19628249	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur4|SINE|Alu	30148.0	NR_033642	100041244.0	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	135.0	144.69	79.55	138.99	112.9	106.9	136.25	189.25	121.16
Merged-chr11-6680529-1	chr11	6680029	6681029	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20293.0	NR_028586	100041311.0	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	18.88	12.44	11.1	27.66	8.86	27.33	8.45	3.98	9.99
Merged-chr14-73451787-1	chr14	73451287	73452287	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-58262.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	32.61	27.19	11.1	24.29	20.99	27.33	16.9	26.97	19.36
Merged-chr11-68408343-2	chr11	68407850	68408850	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21524.0	NM_008744	18208.0	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	15.45	5.07	7.4	14.17	16.33	7.23	14.79	3.98	0.0
Merged-chr7-28982687-1	chr7	28982187	28983187	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001285943)	promoter-TSS (NM_001285943)	-167.0	NM_008279	26411.0	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	68.65	62.21	52.72	82.32	93.3	68.32	60.2	61.9	31.23
Merged-chr8-123803811-1	chr8	123803311	123804311	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-2185.0	NM_009003	19341.0	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	6.86	0.92	2.77	0.0	1.4	8.04	1.06	0.44	1.25
Merged-chr8-39640789-1	chr8	39640289	39641289	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	1889.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	76.66	136.85	44.4	97.83	105.9	83.59	171.1	164.93	61.2
Merged-chr11-77441192-1	chr11	77440692	77441692	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 12 of 14)	intron (NM_177710, intron 12 of 14)	-22721.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	28.6	29.03	17.57	36.43	15.86	23.31	22.18	23.88	28.73
Merged-chr8-107589033-2	chr8	107588537	107589537	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010817)	promoter-TSS (NM_010817)	-555.0	NM_010817	17463.0	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	62.35	88.01	47.17	38.46	52.25	40.99	71.82	68.54	30.6
Merged-chr4-138866700-1	chr4	138866200	138867200	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3231.0	NM_001122954	18784.0	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	4.0	3.69	6.47	1.35	4.67	4.82	2.11	2.21	3.12
Merged-chrX-159211094-1	chrX	159210594	159211594	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44688.0	NM_148945	110651.0	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	2.86	0.46	14.8	4.72	5.13	2.41	7.39	1.77	4.37
Merged-chr10-8240429-1	chr10	8239929	8240929	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 7 of 7)	intron (NM_177387, intron 7 of 7)	278396.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	32.61	29.49	15.72	28.34	18.66	36.97	38.02	31.39	29.98
Merged-chr19-10940962-1	chr19	10940462	10941462	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023731)	TTS (NM_023731)	3802.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	8.01	1.84	0.0	6.07	4.2	2.41	5.28	4.86	1.25
Merged-chr6-51914005-1	chr6	51913505	51914505	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 6 of 12)	ORR1F|LTR|ERVL-MaLR	98544.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	2.29	5.53	3.7	4.05	6.06	9.65	4.22	7.52	0.0
Merged-chr13-55428893-1	chr13	55428393	55429393	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2089.0	NM_021489	58992.0	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	150.45	137.31	109.14	103.91	81.64	125.39	198.56	268.84	114.91
Merged-chr5-130845732-1	chr5	130845232	130846232	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	396940.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	6.86	13.36	9.25	12.14	12.6	11.25	9.51	4.86	6.25
Merged-chr18-6760991-1	chr18	6760491	6761491	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4176.0	NM_181070	19330.0	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	10.87	8.75	5.55	10.12	14.46	20.09	10.56	15.92	9.37
Merged-chr15-59201385-1	chr15	59200885	59201885	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-105563.0	NR_045613	100416830.0	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	14.3	12.44	25.9	24.29	10.26	24.92	13.73	13.71	16.24
Merged-chr4-126197620-3	chr4	126197121	126198121	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	3386.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	30.32	25.8	21.27	22.94	16.33	18.49	40.14	34.49	22.48
Merged-chr1-92753401-1	chr1	92752901	92753901	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-78244.0	NM_016696	14733.0	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	17.16	15.67	7.4	15.52	7.0	23.31	3.17	4.86	12.49
Merged-chr15-76069315-1	chr15	76068815	76069815	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133691)	TTS (NM_133691)	469.0	NM_134089	105782.0	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	14.87	11.52	25.9	22.27	10.26	14.47	26.4	16.36	7.49
Merged-chr4-34960301-1	chr4	34959801	34960801	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178061, intron 3 of 3)	intron (NM_178061, intron 3 of 3)	-48820.0	NR_040652	73696.0	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	3.43	4.15	3.7	10.12	6.53	13.66	3.17	2.65	9.37
Merged-chr1-20466522-1	chr1	20466022	20467022	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	110068.0	NR_045734	75028.0	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	1.72	0.92	7.4	11.47	3.73	6.43	4.22	1.77	3.12
Merged-chr3-142295415-1	chr3	142294915	142295915	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190852, intron 7 of 15)	intron (NM_001190852, intron 7 of 15)	96435.0	NM_022554	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	2.86	3.23	2.77	4.05	4.67	12.06	7.39	8.4	16.24
Merged-chr1-88238728-1	chr1	88238228	88239228	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281466, intron 14 of 41)	intron (NM_001281466, intron 14 of 41)	11708.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	6.86	7.83	14.8	9.45	9.8	14.47	3.17	7.52	13.12
Merged-chr7-79877992-1	chr7	79877492	79878492	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009682, exon 6 of 6)	3' UTR (NM_009682, exon 6 of 6)	-29782.0	NM_008486	16790.0	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	6.86	1.38	1.85	8.77	3.27	9.65	9.51	2.21	3.75
Merged-chr12-40781753-1	chr12	40781253	40782253	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 30 of 52)	intron (NM_172803, intron 30 of 52)	-242337.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	7.44	6.45	1.85	3.37	1.87	5.63	1.06	3.98	5.0
Merged-chr12-32131500-1	chr12	32131000	32132000	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70221.0	NM_011158	19088.0	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	10.87	6.91	5.55	9.45	4.67	11.25	12.67	4.86	13.74
Merged-chr10-93306096-1	chr10	93305596	93306596	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001322265, intron 1 of 4)	intron (NM_001322265, intron 1 of 4)	5063.0	NM_001322268	13713.0	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	3.43	4.61	2.77	8.1	3.27	4.82	7.39	4.86	0.62
Merged-chr4-138154081-1	chr4	138153581	138154581	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355700, intron 10 of 30)	intron (NM_001355700, intron 10 of 30)	-9128.0	NR_105825	102466907.0		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	4.58	4.15	5.55	1.35	3.27	4.82	2.11	0.88	7.49
Merged-chr15-59565917-1	chr15	59565417	59566417	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-82737.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	9.15	5.99	3.7	18.89	4.2	4.82	3.17	3.98	3.75
Merged-chr17-43035315-1	chr17	43034815	43035815	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 1 of 5)	PB1D10|SINE|Alu	18760.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	33.75	45.62	61.97	48.58	49.45	48.23	25.35	23.43	37.47
Merged-chr14-70192100-1	chr14	70191600	70192600	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271408, exon 12 of 21)	exon (NM_001271408, exon 12 of 21)	146.0	NM_001271409	20410.0	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.72	5.07	6.47	12.82	5.13	4.82	4.22	2.65	3.75
Merged-chr18-69510957-1	chr18	69510457	69511457	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 5 of 19)	intron (NM_001361128, intron 5 of 19)	164797.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.58	4.15	0.0	6.75	7.93	8.04	10.56	8.4	8.74
Merged-chr5-142896298-2	chr5	142895687	142896687	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033312)	promoter-TSS (NM_001033312)	-949.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	38.9	36.4	46.25	41.83	27.52	46.62	39.08	37.58	33.1
Merged-chr19-17256540-1	chr19	17256040	17257040	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR11A|LTR|ERVK	82965.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	12.01	9.68	12.95	14.17	15.39	16.08	10.56	10.61	9.99
Merged-chr7-3415513-1	chr7	3415013	3416013	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_133190)	TTS (NM_133190)	447.0	NR_128566	104795667.0		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	6.29	2.3	3.7	1.35	2.33	1.61	4.22	1.33	3.12
Merged-chr11-37186301-1	chr11	37185801	37186801	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-242060.0	NM_011856	23964.0	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.0	1.38	2.77	0.0	2.8	2.41	3.17	2.21	1.25
Merged-chr4-46305549-1	chr4	46305049	46306049	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38645.0	NM_183298	110805.0	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	24.03	22.12	12.95	43.86	24.26	39.39	13.73	10.17	13.12
Merged-chr17-67182473-1	chr17	67181973	67182973	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 2 of 32)	Lx9|LINE|L1	-156238.0	NR_049205	100885844.0		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	3.43	5.99	5.55	4.05	6.53	1.61	3.17	7.52	8.74
Merged-chr4-95326084-1	chr4	95325584	95326584	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-231423.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	3.43	1.84	6.47	5.4	3.27	0.0	3.17	3.1	2.5
Merged-chr2-30969246-1	chr2	30968746	30969746	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12B|LTR|ERVK	-1328.0	NM_144884	30931.0	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	9.15	8.29	0.0	2.7	3.73	6.43	2.11	4.42	3.75
Merged-chrX-109096792-1	chrX	109096292	109097292	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	1385.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	39.47	60.82	49.02	49.93	25.66	44.21	60.2	68.98	55.58
Merged-chr15-76009880-1	chr15	76009380	76010380	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001168253)	promoter-TSS (NM_001168253)	-382.0	NM_001168253	105732.0	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	13.16	9.22	11.1	18.22	4.67	16.08	9.51	7.96	15.61
Merged-chr3-126576159-1	chr3	126575659	126576659	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-20792.0	NM_001346636	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	2.86	5.99	3.7	2.02	4.67	1.61	6.34	4.86	2.5
Merged-chr10-98716359-1	chr10	98715859	98716859	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198283.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	6.86	7.37	6.47	2.02	6.06	4.82	4.22	3.1	3.75
Merged-chr16-11345406-1	chr16	11344906	11345906	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 1 of 20)	intron (NM_028964, intron 1 of 20)	22502.0	NM_028964	74478.0	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	50.34	35.94	40.7	47.23	36.85	40.19	32.74	36.26	24.36
Merged-chr7-6384146-1	chr7	6383646	6384646	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175247, intron 1 of 6)	intron (NM_175247, intron 1 of 6)	828.0	NM_175247	22690.0	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	8.01	4.15	3.7	12.14	2.8	5.63	3.17	2.65	5.0
Merged-chr18-60515694-1	chr18	60515194	60516194	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10460.0	NM_026302	67665.0	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	13.73	12.9	22.2	17.54	13.06	9.65	7.39	4.86	10.62
Merged-chr3-135522155-1	chr3	135521655	135522655	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027288, intron 5 of 16)	intron (NM_027288, intron 5 of 16)	36544.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	2.86	0.46	5.55	12.82	1.87	7.23	1.06	4.42	1.87
Merged-chr4-135973257-3	chr4	135972760	135973760	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011942)	promoter-TSS (NM_011942)	-666.0	NM_011942	26394.0	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	73.79	73.26	69.37	103.91	117.09	105.3	126.74	118.94	72.45
Merged-chr12-80937904-1	chr12	80937404	80938404	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	7495.0	NR_045057	100504661.0	Mm.442322	NR_045057	ENSMUSG00000112880	Gm20337	-	predicted gene, 20337	ncRNA	30.89	21.2	21.27	23.62	15.86	12.06	40.14	22.11	19.36
Merged-chr18-77704952-2	chr18	77704425	77705425	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178670, intron 1 of 4)	intron (NM_178670, intron 1 of 4)	9085.0	NM_178670	212163.0	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	25.17	56.68	38.85	37.11	48.52	77.16	35.91	33.6	31.23
Merged-chr8-70561398-1	chr8	70560898	70561898	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	21723.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	17.16	13.36	20.35	73.54	98.43	24.92	40.14	19.01	8.12
Merged-chr2-131430256-1	chr2	131429756	131430756	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61606.0	NM_001177834	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	14.3	5.07	9.25	13.49	13.53	6.43	12.67	8.84	3.75
Merged-chr14-16302914-1	chr14	16302414	16303414	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021504, intron 10 of 11)	intron (NM_021504, intron 10 of 11)	-53106.0	NM_027695	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	9.15	12.9	14.8	8.77	8.86	11.25	10.56	5.31	5.62
Merged-chr14-54739535-1	chr14	54739035	54740035	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-27361.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	7.44	7.83	5.55	5.4	4.2	15.27	5.28	6.19	3.12
Merged-chr7-104218817-2	chr7	104218318	104219318	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	23.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	4.0	4.61	1.85	7.42	13.53	12.06	22.18	21.67	13.74
Merged-chr2-120629794-1	chr2	120629294	120630294	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20199.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	66.93	64.51	71.22	73.54	67.64	86.81	110.9	120.71	61.83
Merged-chr2-148401029-1	chr2	148400529	148401529	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5652.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	4.58	2.76	3.7	2.7	3.27	1.61	6.34	3.1	11.24
Merged-chr15-5243714-1	chr15	5243214	5244214	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008965, exon 1 of 3)	5' UTR (NM_008965, exon 1 of 3)	473.0	NM_001136079	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	39.47	39.63	33.3	28.34	25.66	18.49	62.31	44.66	30.6
Merged-chr15-76247779-1	chr15	76247279	76248279	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105918)	promoter-TSS (NR_105918)	-412.0	NR_105918	102465575.0		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	47.48	30.41	24.97	45.88	21.46	39.39	59.15	35.82	21.23
Merged-chr9-3023237-1	chr9	3022737	3023737	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	15506.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	212.8	1020.18	203.49	263.14	1064.11	228.28	10.56	12.38	264.18
Merged-chr10-127514912-1	chr10	127514412	127515412	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001098789)	promoter-TSS (NM_001098789)	-27.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	9.72	2.3	7.4	0.67	0.47	1.61	1.06	1.33	9.99
Merged-chr2-33049063-1	chr2	33048563	33049563	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 6 of 29)	intron (NM_001355201, intron 6 of 29)	37394.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	17.73	7.83	7.4	12.14	7.93	6.43	11.62	11.94	6.87
Merged-chr10-105281229-1	chr10	105280729	105281729	+	602.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177368, intron 8 of 11)	RMER15|LTR|ERVL	293250.0	NM_177368	278279.0	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	2.86	2.3	0.0	2.02	2.8	4.82	1.06	0.88	3.75
Merged-chr12-76318633-1	chr12	76318133	76319133	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138745, intron 27 of 27)	intron (NM_138745, intron 27 of 27)	-6258.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	100.68	76.49	58.27	41.83	45.72	53.05	65.48	68.98	46.84
Merged-chr11-77630540-1	chr11	77630040	77631040	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22725.0	NM_144825	216965.0	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	5.72	2.76	0.92	2.7	2.8	4.02	7.39	0.0	1.25
Merged-chr5-34347304-1	chr5	34346804	34347804	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304270, intron 3 of 7)	intron (NM_001304270, intron 3 of 7)	10372.0	NM_001304270	19822.0	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	23.45	20.74	27.75	15.52	19.59	32.96	21.12	31.39	38.1
Merged-chr5-144312428-1	chr5	144311928	144312928	+	602.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025833, intron 3 of 13)	Tigger6a|DNA|TcMar-Tigger	35367.0	NR_040432	100504231.0	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	-	predicted gene 15708	ncRNA	0.0	4.15	3.7	2.02	0.47	1.61	4.22	3.54	6.25
Merged-chr16-58556726-1	chr16	58556226	58557226	+	602.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-32473.0	NM_001357434	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	36.61	27.19	22.2	47.23	34.52	30.54	10.56	7.96	9.99
Merged-chr11-100322836-3	chr11	100322312	100323312	+	601.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011508)	TTS (NM_011508)	2863.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	40.04	44.24	53.65	36.43	14.46	25.72	27.46	32.72	37.47
Merged-chr4-120909982-3	chr4	120909474	120910474	+	601.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	15031.0	NM_028457	73172.0	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	8.01	4.15	1.85	4.05	11.66	1.61	2.11	4.42	0.0
Merged-chr7-114577116-2	chr7	114576633	114577633	+	601.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14161.0	NM_177382	244209.0	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	30.32	26.26	22.2	28.34	21.93	19.29	23.24	26.09	24.98
Merged-chr9-55285471-1	chr9	55284971	55285971	+	601.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-1846.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	1.72	5.07	5.55	4.05	2.8	4.02	1.06	1.77	1.25
Merged-chr14-20078615-3	chr14	20078115	20079115	+	601.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026209, intron 1 of 1)	intron (NM_026209, intron 1 of 1)	4557.0	NM_026209	67509.0	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	18.31	26.73	31.45	25.64	18.66	20.9	27.46	15.03	25.61
Merged-chr3-100999163-1	chr3	100998663	100999663	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167906, intron 8 of 8)	intron (NM_001167906, intron 8 of 8)	-29500.0	NM_001013026	74044.0	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	6.29	5.99	1.85	9.45	7.46	7.23	5.28	8.4	0.0
Merged-chr7-28807842-1	chr7	28807342	28808342	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3048.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	48.62	38.25	46.25	48.58	37.32	45.01	53.87	42.45	25.61
Merged-chr3-142699722-1	chr3	142699222	142700222	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1326.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	8.01	2.3	11.1	10.8	2.33	5.63	3.17	2.21	6.25
Merged-chr13-30745402-1	chr13	30744902	30745902	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3831.0	NM_001347508	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	6.86	3.23	8.32	6.75	4.2	3.22	1.06	4.42	7.49
Merged-chr11-80169351-1	chr11	80168851	80169851	+	601.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172133, intron 6 of 10)	intron (NM_172133, intron 6 of 10)	-14521.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	196.79	149.75	105.44	217.93	122.69	165.58	196.45	198.09	110.54
Merged-chr2-4601439-1	chr2	4600939	4601939	+	601.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 8 of 11)	intron (NM_001177844, intron 8 of 11)	41685.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	6.86	5.53	3.7	4.05	1.87	10.45	3.17	1.77	8.74
Merged-chr9-36970832-2	chr9	36970331	36971331	+	601.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	137257.0	NM_001357611	235180.0	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	4.0	1.38	0.0	0.0	0.47	1.61	1.06	0.0	0.0
Merged-chr11-61760729-2	chr11	61760271	61761271	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144806, intron 1 of 11)	B3|SINE|B2	1317.0	NM_144806	212627.0	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	20.59	37.78	22.2	29.69	34.99	27.33	43.3	42.45	19.98
Merged-chr10-79838224-1	chr10	79837724	79838724	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	intron (NR_038088, intron 3 of 4)	-16208.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	14.3	11.06	25.9	12.14	7.0	12.06	5.28	8.4	22.48
Merged-chr19-4301962-1	chr19	4301462	4302462	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	4260.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	31.46	25.34	54.57	43.86	33.12	42.6	57.03	49.08	45.59
Merged-chr2-67378768-1	chr2	67378268	67379268	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67234.0	NM_001083919	241431.0	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	1.72	4.61	4.62	10.12	3.73	9.65	6.34	2.65	5.0
Merged-chr5-122639649-1	chr5	122639149	122640149	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4262.0	NM_001038839	18439.0	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	13.73	5.53	8.32	13.49	8.4	10.45	3.17	3.54	3.12
Merged-chr7-66357046-1	chr7	66356546	66357546	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146191, intron 2 of 33)	intron (NM_146191, intron 2 of 33)	24678.0	NR_106024	102465640.0		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	45.19	59.9	84.17	43.18	32.19	71.54	50.7	46.87	70.57
Merged-chr11-5503469-1	chr11	5502969	5503969	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-17172.0	NM_013842	22433.0	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	21.17	25.8	13.87	18.89	16.33	30.54	25.35	28.74	43.09
Merged-chr12-91314407-1	chr12	91313907	91314907	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 10 of 25)	intron (NM_181815, intron 10 of 25)	70002.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	2.29	4.61	0.0	5.4	1.87	3.22	0.0	3.54	7.49
Merged-chr14-48488564-1	chr14	48488064	48489064	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132324, intron 9 of 13)	L1MA4|LINE|L1	42212.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	1.72	2.76	0.0	6.07	6.53	3.22	3.17	2.65	5.0
Merged-chr4-3771946-2	chr4	3771463	3772463	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	intron (NM_001111096, intron 10 of 12)	56999.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	22.88	10.14	37.0	10.12	14.93	21.7	13.73	20.34	14.36
Merged-chr3-127918222-1	chr3	127917722	127918722	+	601.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040552, intron 1 of 4)	ORR1D2|LTR|ERVL-MaLR	2051.0	NR_040552	329753.0	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	3.43	3.69	0.92	4.05	1.4	1.61	5.28	3.98	3.75
Merged-chr15-101976810-2	chr15	101976317	101977317	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22530.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	360.39	500.41	308.01	277.98	401.2	448.51	354.88	440.84	291.03
Merged-chrX-164967665-2	chrX	164967145	164968145	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029730, intron 2 of 14)	intron (NM_029730, intron 2 of 14)	12730.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	14.87	10.14	0.92	7.42	4.67	19.29	6.34	3.54	6.87
Merged-chr10-53412367-1	chr10	53411867	53412867	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152767, intron 1 of 2)	Lx9|LINE|L1	2485.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	3.43	5.99	7.4	4.05	7.46	9.65	16.9	7.52	2.5
Merged-chr16-18813124-1	chr16	18812624	18813624	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011672, intron 1 of 11)	intron (NM_011672, intron 1 of 11)	830.0	NM_011672	22230.0	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1	Ufd1l	ubiquitin recognition factor in ER-associated degradation 1	protein-coding	89.24	76.49	33.3	75.57	64.38	31.35	83.44	91.97	51.84
Merged-chr3-51337715-2	chr3	51337239	51338239	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023502, intron 1 of 9)	intron (NM_023502, intron 1 of 9)	2905.0	NM_001356358	69257.0	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	67.5	69.12	25.9	74.22	59.71	56.27	71.82	67.65	48.71
Merged-chr9-121679681-1	chr9	121679181	121680181	+	601.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178677)	TTS (NM_178677)	25348.0	NM_178677	215474.0	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	1.14	2.3	0.0	1.35	3.27	1.61	5.28	1.77	6.25
Merged-chr2-157036541-1	chr2	157036041	157037041	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164663, intron 6 of 14)	MIR3|SINE|MIR	-29466.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	10.3	5.07	5.55	13.49	3.73	3.22	6.34	4.86	1.25
Merged-chr15-83169881-2	chr15	83169385	83170385	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2323.0	NM_029787	109754.0	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	9.72	5.07	1.85	6.75	1.87	1.61	5.28	2.21	3.75
Merged-chr5-25527607-2	chr5	25527103	25528103	+	601.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2415.0	NR_027388	73571.0	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	8.01	10.14	11.1	1.35	7.0	8.84	7.39	5.31	11.24
Merged-chr2-94233814-1	chr2	94233314	94234314	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7564.0	NR_106139	102465777.0		NR_106139	ENSMUSG00000106336	Mir129b	mmu-mir-129b	microRNA 129b	ncRNA	2.86	0.92	5.55	2.02	1.87	0.0	3.17	0.88	2.5
Merged-chr11-31796379-1	chr11	31795879	31796879	+	601.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28168.0	NR_102310	414116.0	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	6.86	3.69	7.4	4.05	6.06	2.41	3.17	1.77	3.75
Merged-chr1-178309028-1	chr1	178308528	178309528	+	601.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-10125.0	NM_025511	66359.0	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	6.29	5.07	5.55	3.37	7.93	8.04	6.34	5.75	9.99
Merged-chrUn_JH584304-25326-1	chrUn_JH584304	24826	25826	+	601.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	34363.0	NR_003518	66776.0	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.0	0.0	0.0	0.0	0.0	0.0	8.45	15.03	0.0
Merged-chr8-22227324-3	chr8	22226916	22227916	+	601.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_019576, exon 1 of 5)	5' UTR (NM_019576, exon 1 of 5)	113.0	NM_001293688	56229.0	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	1.14	1.84	5.55	6.07	3.27	1.61	3.17	1.33	6.25
Merged-chr15-66930525-3	chr15	66930008	66931008	+	601.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008681, exon 16 of 16)	3' UTR (NM_008681, exon 16 of 16)	39115.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	3.43	3.23	0.0	6.07	4.67	4.82	7.39	0.88	1.25
Merged-chr1-58714516-1	chr1	58714016	58715016	+	601.25	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_149256)	TTS (NR_149256)	1230.0	NM_001355056	12633.0	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	67.5	90.77	53.65	75.57	50.38	73.14	94.0	88.88	63.7
Merged-chr9-51007096-3	chr9	51006602	51007602	+	601.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178710, intron 1 of 15)	intron (NM_178710, intron 1 of 15)	1971.0	NM_178710	235344.0	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	23.45	18.43	11.1	12.14	12.13	19.29	11.62	15.92	13.74
Merged-chr17-56758278-3	chr17	56757743	56758743	+	601.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008738)	promoter-TSS (NM_008738)	-695.0	NM_008738	18188.0	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	1.72	2.76	1.85	2.7	0.93	1.61	1.06	0.44	7.49
Merged-chr6-17788198-2	chr6	17787691	17788691	+	601.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	RMER1C|Other|Other	39021.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	4.0	11.52	12.02	10.8	9.33	12.86	9.51	3.98	8.74
Merged-chr1-52117377-1	chr1	52116877	52117877	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2061.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	89.24	111.05	93.42	32.39	43.85	35.37	130.97	167.58	96.8
Merged-chr18-9707081-1	chr18	9706581	9707581	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_130449)	promoter-TSS (NM_130449)	-567.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	12.01	5.99	7.4	40.48	35.92	16.08	6.34	3.1	8.12
Merged-chr3-95494498-1	chr3	95493998	95494998	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009709, exon 20 of 21)	exon (NM_009709, exon 20 of 21)	-4712.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	17.73	11.52	9.25	25.64	14.0	20.09	32.74	24.76	11.87
Merged-chr6-49332013-1	chr6	49331513	49332513	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001311112, intron 1 of 3)	(T)n|Simple_repeat|Simple_repeat	12739.0	NM_001311112	57895.0	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	3.43	8.29	5.55	2.02	0.93	3.22	3.17	1.33	4.37
Merged-chr14-48447003-1	chr14	48446503	48447503	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132324, intron 1 of 13)	intron (NR_132324, intron 1 of 13)	651.0	NR_132324	218989.0	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	87.52	111.51	95.27	97.83	67.18	71.54	113.01	80.92	54.96
Merged-chr18-35477988-1	chr18	35477488	35478488	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030749, intron 1 of 9)	RMER4B|LTR|ERVK	-8036.0	NM_001360814	81500.0	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	10.3	7.37	15.72	6.75	12.13	1.61	5.28	4.86	1.25
Merged-chr2-180954354-1	chr2	180953854	180954854	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141933, intron 1 of 5)	intron (NM_001141933, intron 1 of 5)	345.0	NM_001141933	58237.0	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	4.58	0.92	0.0	3.37	0.93	3.22	0.0	2.21	1.25
Merged-chr16-73435126-1	chr16	73434626	73435626	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	771977.0	NM_019413	19876.0	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	2.86	3.69	6.47	3.37	6.06	4.02	4.22	3.54	2.5
Merged-chr10-19094065-1	chr10	19093565	19094565	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-47684.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	58.92	47.0	48.1	51.28	42.92	36.17	71.82	62.79	51.84
Merged-chr8-22935068-1	chr8	22934568	22935568	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081149, intron 16 of 17)	C-rich|Low_complexity|Low_complexity	-39768.0	NM_001110783	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	20.59	21.66	7.4	27.66	21.93	19.29	20.07	7.52	11.87
Merged-chr14-62839100-1	chr14	62838600	62839600	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	1379.0	NR_106174	102465889.0		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	131.0	119.8	79.55	103.91	88.17	85.2	129.91	142.82	73.07
Merged-chr6-38945203-1	chr6	38944703	38945703	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	ORR1E|LTR|ERVL-MaLR	26217.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	9.72	11.06	11.1	5.4	7.93	16.08	7.39	10.17	14.36
Merged-chr14-70988231-1	chr14	70987731	70988731	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	98124.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	2.86	5.99	3.7	3.37	12.6	4.82	9.51	6.19	3.75
Merged-chr3-97751754-1	chr3	97751254	97752254	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039376, intron 17 of 46)	CpG	16260.0	NM_178080	83679.0	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.86	3.23	4.62	6.75	4.67	4.02	9.51	7.96	6.25
Merged-chr15-60835125-3	chr15	60834623	60835623	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10043.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	12.59	11.06	5.55	3.37	12.6	10.45	6.34	6.63	7.49
Merged-chr16-4633871-1	chr16	4633371	4634371	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030205, intron 14 of 27)	intron (NM_030205, intron 14 of 27)	-6074.0	NM_139307	246154.0	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	4.58	1.84	7.4	4.72	1.87	4.02	4.22	1.77	3.75
Merged-chr14-21758642-1	chr14	21758142	21759142	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	ID4_|SINE|ID	7090.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	60.07	63.59	67.52	41.83	35.92	34.56	47.53	64.11	54.96
Merged-chr5-143059523-1	chr5	143059023	143060023	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359851, intron 12 of 15)	intron (NM_001359851, intron 12 of 15)	53497.0	NM_207110	108086.0	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	46.91	73.26	111.92	54.65	21.46	56.27	48.58	58.37	62.45
Merged-chr12-17257137-1	chr12	17256637	17257637	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9458.0	NM_027959	71853.0	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	5.15	1.38	1.85	0.67	0.93	3.22	1.06	2.21	2.5
Merged-chrX-106130911-1	chrX	106130411	106131411	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12364.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	42.9	35.02	33.3	47.9	33.59	56.27	36.97	46.87	24.98
Merged-chr5-3370216-1	chr5	3369716	3370716	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	RLTR11D|LTR|ERVK	26323.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	10.87	18.89	18.5	11.47	15.39	14.47	16.9	11.05	19.98
Merged-chr15-63953478-1	chr15	63952978	63953978	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360038, intron 3 of 11)	intron (NM_001360038, intron 3 of 11)	39017.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	10.3	7.83	9.25	13.49	9.8	12.86	7.39	8.4	9.99
Merged-chr2-34108509-1	chr2	34108009	34109009	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_130173)	promoter-TSS (NR_130173)	-774.0	NR_130173	329387.0	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	18.31	11.52	12.95	31.04	33.12	28.13	39.08	40.68	19.98
Merged-chr11-69670857-1	chr11	69670357	69671357	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159375, intron 2 of 10)	intron (NM_001159375, intron 2 of 10)	1566.0	NM_144958	13681.0	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	120.13	78.33	83.25	139.67	102.17	76.36	118.29	121.15	54.33
Merged-chr10-120365770-1	chr10	120365270	120366270	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-23753.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	27.46	23.5	25.9	35.09	27.99	16.08	19.01	15.03	24.98
Merged-chr14-103374989-1	chr14	103374489	103375489	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28189.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	10.87	6.45	7.4	12.82	7.0	6.43	7.39	10.61	7.49
Merged-chr5-97001752-1	chr5	97001252	97002252	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080708, intron 1 of 15)	ID_B1|SINE|B4	4063.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	17.16	21.66	12.02	32.39	17.26	19.29	30.63	20.34	18.74
Merged-chr9-70862718-1	chr9	70862218	70863218	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	72090.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	4.0	3.69	3.7	5.4	4.2	3.22	2.11	1.77	1.25
Merged-chr7-19466852-1	chr7	19466352	19467352	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8358.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	59.49	53.45	39.77	56.0	53.18	73.95	122.52	105.68	104.92
Merged-chr9-17987814-1	chr9	17987314	17988314	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-304453.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	2.29	4.15	1.85	0.67	0.93	3.22	0.0	2.65	5.0
Merged-chr18-52768885-1	chr18	52768385	52769385	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199154, intron 1 of 10)	CpG	741.0	NM_001199154	67847.0	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	5.15	1.84	0.0	4.72	2.8	6.43	5.28	1.33	2.5
Merged-chr4-40113396-1	chr4	40112896	40113896	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29869.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.15	3.69	3.7	3.37	1.87	3.22	4.22	2.65	2.5
Merged-chr2-45758222-1	chr2	45757722	45758722	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61617.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	24.03	34.56	12.95	17.54	8.4	13.66	6.34	8.84	12.49
Merged-chr10-84398667-1	chr10	84398167	84399167	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	MTD|LTR|ERVL-MaLR	41804.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	11.44	3.23	13.87	11.47	5.13	17.68	7.39	4.86	5.0
Merged-chr1-171843835-1	chr1	171843335	171844335	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 2 of 8)	intron (NM_001289470, intron 2 of 8)	4138.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	142.44	161.74	102.67	191.62	112.9	118.96	202.79	263.97	147.39
Merged-chr13-64162574-1	chr13	64162074	64163074	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019986, intron 1 of 7)	intron (NM_019986, intron 1 of 7)	708.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	23.45	13.82	12.02	18.89	17.73	14.47	42.25	27.86	27.48
Merged-chr13-58488696-1	chr13	58488196	58489196	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85353.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	25.74	23.96	16.65	20.92	14.46	16.08	19.01	22.11	14.99
Merged-chr11-95001261-2	chr11	95000732	95001732	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172261, exon 5 of 10)	exon (NM_172261, exon 5 of 10)	-8647.0	NM_146025	217125.0	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	6.86	7.83	12.95	3.37	2.33	12.86	3.17	2.65	9.99
Merged-chr1-174239966-1	chr1	174239466	174240466	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011465, intron 43 of 51)	intron (NM_011465, intron 43 of 51)	11010.0	NM_146715	258710.0	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	2.86	2.76	3.7	2.7	4.67	1.61	1.06	2.21	0.0
Merged-chr17-47371487-1	chr17	47370987	47371987	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183086, intron 1 of 6)	intron (NM_183086, intron 1 of 6)	2290.0	NM_183086	64657.0	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	5.15	5.99	7.4	4.05	1.4	1.61	6.34	1.77	1.25
Merged-chr3-90117880-1	chr3	90117380	90118380	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029937, intron 3 of 39)	RSINE1|SINE|B4	13748.0	NM_029937	77595.0	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	4.0	3.23	6.47	3.37	5.6	8.04	4.22	5.75	5.0
Merged-chr19-6978468-1	chr19	6977968	6978968	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008020, intron 3 of 5)	intron (NM_008020, intron 3 of 5)	924.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	9.15	4.15	5.55	7.42	4.2	9.65	5.28	4.86	7.49
Merged-chr3-88432776-1	chr3	88432276	88433276	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7635.0	NM_001357749	229517.0	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	14.3	7.83	7.4	8.1	5.13	6.43	4.22	3.54	15.61
Merged-chr16-18247735-2	chr16	18247223	18248223	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011239, intron 1 of 5)	intron (NM_011239, intron 1 of 5)	971.0	NM_011239	19385.0	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	57.21	38.25	39.77	33.74	52.25	32.15	43.3	56.16	30.6
Merged-chr6-28262821-1	chr6	28262321	28263321	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1220.0	NM_001081678	627049.0	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	57.78	59.9	28.67	51.28	41.05	55.46	51.75	49.08	31.85
Merged-chr9-106890573-1	chr9	106890073	106891073	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029103, intron 2 of 3)	intron (NM_029103, intron 2 of 3)	1365.0	NM_029103	74840.0	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	22.31	11.06	12.95	17.54	5.13	22.51	16.9	15.48	11.24
Merged-chr10-125318731-1	chr10	125318231	125319231	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	intron (NM_001358496, intron 1 of 5)	-9915.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	10.87	15.21	12.95	13.49	7.0	8.04	16.9	8.4	3.75
Merged-chr14-31472609-2	chr14	31472125	31473125	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001359847)	TTS (NM_001359847)	22133.0	NM_001359850	67011.0	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	2.86	2.76	1.85	4.72	5.6	3.22	0.0	1.33	5.0
Merged-chr14-55854633-1	chr14	55854133	55855133	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040072, intron 1 of 7)	intron (NM_001040072, intron 1 of 7)	518.0	NM_001040072	277154.0	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	4.58	4.61	7.4	12.82	8.86	15.27	3.17	0.44	9.99
Merged-chr4-131875477-1	chr4	131874977	131875977	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020587, intron 1 of 5)	intron (NM_020587, intron 1 of 5)	1838.0	NM_020587	57317.0	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	16.59	19.81	12.95	16.19	19.59	26.53	21.12	22.11	22.48
Merged-chr9-40268070-1	chr9	40267570	40268570	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1146.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	1.14	2.3	5.55	4.05	0.93	3.22	8.45	0.44	0.62
Merged-chr15-94588346-1	chr15	94587846	94588846	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008971, intron 1 of 8)	intron (NM_008971, intron 1 of 8)	1478.0	NM_008971	19230.0	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	28.6	65.43	39.77	33.74	47.12	62.7	71.82	72.07	49.34
Merged-chr12-91587115-1	chr12	91586615	91587615	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175335, intron 1 of 8)	intron (NM_175335, intron 1 of 8)	2534.0	NM_031391	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	37.18	31.79	15.72	23.62	13.53	16.88	41.19	22.55	18.74
Merged-chr1-84934489-1	chr1	84933989	84934989	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027921, intron 1 of 4)	intron (NM_027921, intron 1 of 4)	594.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	5.15	2.76	1.85	4.05	4.2	8.04	5.28	1.77	5.0
Merged-chr12-24680923-1	chr12	24680423	24681423	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001161807, exon 1 of 5)	5' UTR (NM_001161807, exon 1 of 5)	872.0	NM_138686	12879.0	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	1.14	0.92	0.0	1.35	0.93	1.61	1.06	0.0	0.0
Merged-chr3-146645696-1	chr3	146645196	146646196	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_029144)	TTS (NM_029144)	3764.0	NR_045949	100286843.0	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	-	predicted gene 16325	ncRNA	7.44	4.61	1.85	10.12	5.6	4.82	5.28	3.1	6.25
Merged-chr6-99440059-1	chr6	99439559	99440559	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4714.0	NM_053202	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	18.31	13.36	18.5	14.17	15.39	16.88	13.73	8.4	7.49
Merged-chr14-86781788-1	chr14	86781288	86782288	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019670, intron 25 of 27)	intron (NM_019670, intron 25 of 27)	359436.0	NM_019670	56419.0	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	1.72	2.3	0.0	2.7	2.33	0.0	0.0	3.98	0.62
Merged-chr14-30218261-1	chr14	30217761	30218761	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	135225.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	7.44	4.61	3.7	4.72	3.27	5.63	3.17	3.54	1.25
Merged-chr4-46689597-1	chr4	46689097	46690097	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081141, intron 13 of 18)	intron (NM_001081141, intron 13 of 18)	-39398.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	1.14	1.84	3.7	2.02	0.0	0.0	4.22	2.65	0.62
Merged-chr11-50437346-1	chr11	50436846	50437846	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6235.0	NM_172557	216724.0	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	13.73	8.75	22.2	8.77	12.13	15.27	10.56	12.82	15.61
Merged-chr11-69834354-1	chr11	69833854	69834854	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198862, exon 1 of 7)	exon (NM_198862, exon 1 of 7)	495.0	NM_198862	216856.0	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2|NLG2	neuroligin 2	protein-coding	1.72	0.46	1.85	1.35	3.73	1.61	1.06	0.0	5.0
Merged-chr5-30998566-1	chr5	30998066	30999066	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	29889.0	NM_053085	69852.0	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	3.43	2.76	0.0	0.67	1.4	2.41	1.06	3.54	1.25
Merged-chr4-63883443-1	chr4	63882943	63883943	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22159.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	4.58	5.07	12.95	6.75	2.8	9.65	4.22	4.42	6.25
Merged-chr14-54388904-1	chr14	54388404	54389404	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011405, intron 4 of 11)	L2|LINE|L2	20568.0	NM_001253680	20540.0	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	20.59	25.34	21.27	35.76	21.46	38.58	9.51	5.75	6.25
Merged-chr4-43577468-1	chr4	43576968	43577968	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172692, intron 1 of 16)	intron (NM_172692, intron 1 of 16)	-1267.0	NM_172866	242406.0	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	13.16	15.67	22.2	11.47	16.33	14.47	21.12	11.94	18.74
Merged-chr2-29412619-1	chr2	29412119	29413119	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290490, intron 3 of 5)	intron (NM_001290490, intron 3 of 5)	34105.0	NM_001290490	68975.0	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	4.0	3.23	5.55	9.45	5.13	6.43	2.11	4.86	5.62
Merged-chr1-13342846-1	chr1	13342346	13343346	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	29583.0	NM_001302702	17978.0	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	10.87	4.15	9.25	10.8	4.67	4.82	6.34	3.54	6.25
Merged-chr3-122209166-1	chr3	122208666	122209666	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36391.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	8.01	8.29	29.6	10.12	2.33	9.65	7.39	7.07	6.25
Merged-chr19-59389369-1	chr19	59388869	59389869	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43589.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	1.14	4.61	2.77	0.67	1.87	0.0	2.11	1.33	1.25
Merged-chr15-73637743-1	chr15	73637243	73638243	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12999.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	15.45	9.68	18.5	7.42	9.8	19.29	20.07	7.52	11.87
Merged-chr15-89212217-1	chr15	89211717	89212717	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026813, intron 1 of 24)	intron (NM_026813, intron 1 of 24)	658.0	NM_027805	71474.0	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	39.47	39.17	25.9	46.56	42.92	26.53	46.47	24.32	29.98
Merged-chr11-88954224-2	chr11	88953731	88954731	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029023, intron 1 of 12)	RSINE1|SINE|B4	1211.0	NM_029023	74617.0	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	42.9	58.06	37.0	43.18	60.18	24.11	96.11	88.43	18.74
Merged-chr9-95514487-1	chr9	95513987	95514987	+	601.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL-int|LTR|ERVL	-2491.0	NM_001357974	67958.0	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	6.29	8.29	12.02	10.12	4.67	1.61	7.39	4.42	8.74
Merged-chr5-76322459-1	chr5	76321959	76322959	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310637, intron 2 of 4)	intron (NM_001310637, intron 2 of 4)	8697.0	NM_001310637	79455.0	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	6.29	8.29	5.55	4.05	5.13	14.47	8.45	6.19	16.86
Merged-chr1-151709010-1	chr1	151708510	151709510	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 11 of 13)	intron (NM_022018, intron 11 of 13)	45717.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	4.0	2.3	10.17	5.4	1.87	0.0	2.11	1.77	2.5
Merged-chr2-147178330-1	chr2	147177830	147178830	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077632, intron 2 of 2)	intron (NM_001077632, intron 2 of 2)	-5753.0	NR_030769	100313531.0	Mm.405189	NR_030769	ENSMUSG00000086509	Nkx2-2os	Gm14112|Nkx2-2as|Nkx2.2AS	NK2 homeobox 2, opposite strand	ncRNA	11.44	2.3	0.0	1.35	0.47	3.22	1.06	1.77	1.87
Merged-chr16-33621506-2	chr16	33620986	33621986	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134251, intron 8 of 12)	intron (NM_134251, intron 8 of 12)	-62980.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	32.61	26.26	17.57	20.92	16.79	8.04	20.07	22.99	20.61
Merged-chr13-20352455-1	chr13	20351955	20352955	+	601.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080288, intron 14 of 21)	Lx10|LINE|L1	-120535.0	NM_198093	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	7.44	10.6	11.1	6.75	3.73	24.92	10.56	6.19	14.36
Merged-chr7-99917431-1	chr7	99916931	99917931	+	601.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001164258, exon 19 of 19)	exon (NM_001164258, exon 19 of 19)	58213.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	7.44	2.3	0.0	7.42	0.93	6.43	4.22	0.0	5.0
Merged-chr2-119351057-2	chr2	119350580	119351580	+	600.916626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026929)	promoter-TSS (NM_026929)	-162.0	NM_026929	69065.0	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.43	1.38	11.1	12.14	3.73	4.02	0.0	0.44	0.0
Merged-chr8-68203562-2	chr8	68203060	68204060	+	600.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72968.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	17.73	14.28	15.72	13.49	10.73	12.86	16.9	10.61	13.12
Merged-chr7-120670347-3	chr7	120669851	120670851	+	600.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-8.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	3.43	3.23	0.92	2.7	2.8	0.0	5.28	3.1	2.5
Merged-chr11-83473934-2	chr11	83473449	83474449	+	600.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027427, intron 1 of 15)	intron (NM_027427, intron 1 of 15)	841.0	NM_027427	70439.0	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	69.22	36.4	41.62	57.35	43.85	47.42	63.37	50.85	38.72
Merged-chr7-110930632-2	chr7	110930129	110931129	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_194464, intron 2 of 20)	intron (NM_194464, intron 2 of 20)	15558.0	NM_010826	17540.0	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	4.0	3.23	7.4	6.75	2.33	6.43	2.11	0.88	3.12
Merged-chr5-143434608-2	chr5	143434095	143435095	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29898.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	3.43	5.07	0.0	4.05	3.27	0.0	3.17	5.31	0.0
Merged-chr5-149376059-2	chr5	149375593	149376593	+	600.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35656.0	NM_027519	70717.0	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	2.86	0.46	2.77	2.7	1.87	3.22	0.0	0.88	2.5
Merged-chr17-23535237-3	chr17	23534740	23535740	+	600.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15559.0	NR_126485	320020.0	Mm.445111	NR_126484		6330415G19Rik	-	RIKEN cDNA 6330415G19 gene	ncRNA	2.86	4.15	0.0	2.7	4.67	1.61	6.34	1.33	0.0
Merged-chr14-77848584-1	chr14	77848084	77849084	+	600.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025384, intron 3 of 5)	ORR1B2|LTR|ERVL-MaLR	26333.0	NM_025384	66148.0	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	17.73	15.21	3.7	9.45	10.73	11.25	17.96	21.67	24.98
Merged-chr15-74528299-1	chr15	74527799	74528799	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359759, intron 1 of 30)	MIR|SINE|MIR	12103.0	NM_001359759	107831.0	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	1.72	2.76	2.77	4.72	5.13	8.04	2.11	1.77	2.5
Merged-chr2-154215401-1	chr2	154214901	154215901	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001012392, intron 12 of 15)	intron (NM_001012392, intron 12 of 15)	-8341.0	NM_144890	228802.0	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	3.43	3.69	0.0	4.72	5.6	8.04	4.22	0.88	1.25
Merged-chr15-6525613-1	chr15	6525113	6526113	+	600.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-54234.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	26.31	42.85	44.4	30.36	33.59	21.7	40.14	24.32	24.36
Merged-chr10-117217433-3	chr10	117216967	117217967	+	600.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_026570, exon 5 of 7)	exon (NM_026570, exon 5 of 7)	7040.0	NM_026570	64050.0	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	29.17	27.65	27.75	21.59	21.46	25.72	29.57	16.8	18.74
Merged-chr5-150441937-1	chr5	150441437	150442437	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172887, intron 46 of 60)	B3|SINE|B2	60282.0	NR_024513	194292.0	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	5.15	5.99	1.85	2.7	3.27	5.63	2.11	1.33	1.25
Merged-chr8-24595341-1	chr8	24594841	24595841	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008324, intron 1 of 9)	URR1B|DNA|hAT-Charlie	325.0	NM_001293690	15930.0	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.57	5.53	5.55	3.37	2.8	3.22	6.34	4.42	5.0
Merged-chr14-8004223-1	chr14	8003723	8004723	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331064, intron 1 of 8)	intron (NM_001331064, intron 1 of 8)	1257.0	NM_001331064	66082.0	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	8.01	5.99	1.85	2.7	4.2	1.61	3.17	1.77	3.75
Merged-chr8-71755199-2	chr8	71754701	71755701	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29520.0	NM_028715	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	13.73	6.91	9.25	2.02	2.33	4.82	12.67	9.29	8.74
Merged-chr17-66094981-1	chr17	66094481	66095481	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028388, intron 1 of 7)	intron (NM_028388, intron 1 of 7)	6578.0	NM_001278415	72900.0	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	8.01	11.06	14.8	11.47	9.33	6.43	16.9	10.61	8.74
Merged-chr8-126797835-2	chr8	126797356	126798356	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51164.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.29	2.3	3.7	2.7	3.27	2.41	4.22	3.54	6.87
Merged-chr1-84935025-1	chr1	84934525	84935525	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027921)	promoter-TSS (NM_027921)	58.0	NM_027921	71781.0	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	3.43	2.3	1.85	2.02	3.73	4.02	5.28	1.77	11.24
Merged-chr5-4757115-2	chr5	4756663	4757663	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_021457, exon 1 of 1)	exon (NM_021457, exon 1 of 1)	1053.0	NM_021457	14362.0	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	2.29	3.23	7.4	10.8	3.27	2.41	2.11	1.33	2.5
Merged-chr10-75182644-2	chr10	75182158	75183158	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001081412, exon 23 of 23)	3' UTR (NM_001081412, exon 23 of 23)	-29415.0	NM_153406	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	1.72	1.84	1.85	4.72	1.4	1.61	1.06	1.33	3.75
Merged-chr16-55506081-1	chr16	55505581	55506581	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11350.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	48.62	25.8	15.72	41.83	27.52	31.35	47.53	24.76	28.73
Merged-chr18-36019000-2	chr18	36018488	36019488	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167891, intron 9 of 9)	intron (NM_001167891, intron 9 of 9)	54158.0	NR_110349	74002.0	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	163.04	133.63	83.25	100.53	129.22	108.51	98.23	91.53	61.83
Merged-chr2-35906626-2	chr2	35906123	35907123	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029774, intron 3 of 9)	intron (NM_029774, intron 3 of 9)	73001.0	NM_029774	74410.0	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	3.43	4.61	4.62	2.7	1.87	3.22	2.11	0.44	1.25
Merged-chr5-137683825-1	chr5	137683325	137684325	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303271, intron 1 of 12)	PB1D9|SINE|Alu	928.0	NM_001303271	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	45.76	22.12	24.97	31.71	21.93	42.6	40.14	23.88	9.37
Merged-chr8-69585020-1	chr8	69584520	69585520	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	40155.0	NM_001045553	234362.0	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	2.29	5.07	3.7	4.72	6.53	0.0	2.11	2.65	5.0
Merged-chr18-10533780-2	chr18	10533280	10534280	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083628, intron 19 of 32)	intron (NM_001083628, intron 19 of 32)	76572.0	NM_001081222	77805.0	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	18.31	23.96	13.87	31.71	24.26	8.84	41.19	41.12	23.11
Merged-chr12-86974733-1	chr12	86974233	86975233	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13943.0	NM_001080943	238331.0	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	5.15	1.38	0.0	2.02	1.4	0.0	1.06	0.44	5.0
Merged-chr9-57762742-3	chr9	57762192	57763192	+	600.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007713, intron 1 of 12)	intron (NM_007713, intron 1 of 12)	3168.0	NM_007713	102414.0	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	28.03	30.87	43.47	22.94	14.93	22.51	34.85	25.65	31.23
Merged-chr6-143349183-2	chr6	143348675	143349675	+	600.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	103287.0	NR_027803	52285.0	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	6.86	2.3	5.55	1.35	3.27	3.22	3.17	1.33	0.0
Merged-chr17-21536927-2	chr17	21536437	21537437	+	600.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144515, intron 1 of 4)	RLTR19|LTR|ERVK	-1059.0	NR_131123	319870.0	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	10.3	10.6	13.87	10.8	9.33	6.43	17.96	23.43	14.99
Merged-chr11-97440455-2	chr11	97439983	97440983	+	600.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-9677.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	18.88	11.06	19.42	24.29	11.66	23.31	9.51	3.54	3.75
Merged-chr10-62213706-2	chr10	62213214	62214214	+	600.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197996, intron 1 of 7)	ORR1B1|LTR|ERVL-MaLR	17504.0	NM_197996	70423.0	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	19.45	17.97	10.17	12.82	10.73	14.47	12.67	10.17	11.24
Merged-chr7-4309784-1	chr7	4309284	4310284	+	600.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR13B1|LTR|ERVK	-27940.0	NM_010746	17086.0	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	2.86	1.84	1.85	4.72	3.27	8.04	10.56	7.96	5.62
Merged-chr2-169780131-1	chr2	169779631	169780631	+	600.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080455, intron 1 of 1)	intron (NM_080455, intron 1 of 1)	146485.0	NM_080455	228911.0	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.57	1.38	3.7	0.67	3.27	0.0	33.8	20.78	9.99
Merged-chr8-72136424-1	chr8	72135924	72136924	+	600.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001491, intron 1 of 7)	intron (NM_001001491, intron 1 of 7)	1132.0	NM_001001491	326618.0	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	21.17	35.48	26.82	48.58	50.85	43.4	41.19	19.01	24.36
Merged-chr13-51958550-2	chr13	51958055	51959055	+	600.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	111880.0	NM_011817	23882.0	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	4.58	2.3	0.0	6.07	4.2	4.82	3.17	0.88	1.25
Merged-chr1-74763266-3	chr1	74762779	74763779	+	600.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8613.0	NM_009526	22420.0	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	2.86	4.15	0.0	2.02	6.06	2.41	2.11	1.33	5.0
Merged-chr10-91167072-3	chr10	91166556	91167556	+	600.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080129, intron 1 of 8)	B3|SINE|B2	3494.0	NM_001283048	21917.0	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	5.72	5.53	4.62	6.75	5.13	1.61	11.62	5.75	5.62
Merged-chr4-133203544-2	chr4	133203052	133204052	+	600.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7897.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	34.9	11.06	19.42	10.12	5.6	15.27	2.11	3.98	7.49
Merged-chr4-40239179-2	chr4	40238678	40239678	+	600.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172689, intron 1 of 17)	intron (NM_172689, intron 1 of 17)	647.0	NM_172689	230073.0	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	82.95	88.47	71.22	70.17	61.11	85.2	102.45	98.6	64.95
Merged-chr2-173768920-1	chr2	173768420	173769420	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019806, intron 2 of 5)	intron (NM_019806, intron 2 of 5)	31349.0	NM_019806	56491.0	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	24.03	36.4	46.25	41.83	38.72	49.83	59.15	47.31	48.71
Merged-chr4-33513588-1	chr4	33513088	33514088	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75507.0	NR_106198	102465904.0		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	2.86	3.23	5.55	2.7	1.4	1.61	2.11	2.21	1.87
Merged-chr4-55823747-1	chr4	55823247	55824247	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-291272.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	8.01	9.68	5.55	8.77	2.33	3.22	9.51	2.21	1.87
Merged-chr5-139705345-1	chr5	139704845	139705845	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30988.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.58	4.15	4.62	9.45	11.2	14.47	12.67	15.92	13.74
Merged-chr6-125092570-1	chr6	125092070	125093070	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3411.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	17.73	12.9	22.2	19.57	12.6	17.68	13.73	6.19	13.12
Merged-chr15-58108423-1	chr15	58107923	58108923	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_027435, exon 16 of 28)	exon (NM_027435, exon 16 of 28)	26659.0	NM_027435	70472.0	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	5.15	3.69	3.7	3.37	5.13	8.04	13.73	2.21	3.75
Merged-chr9-13651784-1	chr9	13651284	13652284	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013813, intron 1 of 3)	intron (NM_001013813, intron 1 of 3)	-10676.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	20.02	14.75	7.4	20.24	12.13	29.74	4.22	6.19	11.87
Merged-chr4-48407502-1	chr4	48407002	48408002	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001281978, intron 13 of 18)	B1_Mus1|SINE|Alu	65961.0	NM_172304	269536.0	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	4.0	0.92	12.95	4.72	1.87	0.8	3.17	1.77	8.12
Merged-chr11-64836779-1	chr11	64836279	64837279	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD-int|LTR|ERVL-MaLR	-142256.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	16.59	12.9	15.72	2.7	3.73	1.61	30.63	30.51	29.98
Merged-chr2-32859296-1	chr2	32858796	32859796	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12059.0	NM_001113569	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	6.86	3.69	0.0	3.37	0.47	1.61	3.17	3.1	0.0
Merged-chr10-128062450-1	chr10	128061950	128062950	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019766, intron 1 of 7)	intron (NM_019766, intron 1 of 7)	3468.0	NM_019766	56351.0	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3	protein-coding	17.73	17.97	14.8	14.17	11.2	8.04	9.51	10.61	9.99
Merged-chr2-45194141-1	chr2	45193641	45194641	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76699.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	94.39	97.69	81.4	81.64	60.18	84.4	87.66	91.09	65.58
Merged-chrX-38390276-1	chrX	38389776	38390776	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	66184.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	2.29	1.38	5.55	13.49	3.27	3.22	3.17	2.21	6.25
Merged-chr15-25341871-1	chr15	25341371	25342371	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71893.0	NM_027395	70350.0	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.86	3.23	0.0	0.67	6.06	4.02	2.11	1.33	5.0
Merged-chr8-13675960-1	chr8	13675460	13676460	+	600.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1627.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	184.2	182.47	164.64	193.64	222.06	193.71	192.23	286.97	148.64
Merged-chr13-110902971-1	chr13	110902471	110903471	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_131193)	promoter-TSS (NR_131193)	-528.0	NR_131193	75139.0	Mm.490931	NR_131193	ENSMUSG00000114472	Gm38397	-	predicted gene, 38397	ncRNA	66.93	56.22	59.2	56.0	74.17	54.66	69.71	71.19	47.46
Merged-chr6-127467995-1	chr6	127467495	127468495	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346512, intron 1 of 5)	intron (NM_001346512, intron 1 of 5)	14368.0	NM_001346512	101187.0	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	5.72	5.07	5.55	5.4	1.4	8.04	13.73	4.86	8.74
Merged-chr3-122151030-1	chr3	122150530	122151530	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007378, intron 36 of 49)	intron (NM_007378, intron 36 of 49)	-94527.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.43	4.15	1.85	5.4	6.06	1.61	6.34	1.77	2.5
Merged-chr10-8387029-1	chr10	8386529	8387529	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131796.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	22.31	15.67	25.9	20.92	12.13	15.27	23.24	18.57	8.12
Merged-chr2-70963057-1	chr2	70962557	70963557	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55317.0	NM_001110512	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	10.87	3.69	7.4	6.07	4.2	4.02	9.51	6.63	16.24
Merged-chr3-139074062-1	chr3	139073562	139074562	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 1 of 13)	intron (NM_001356388, intron 1 of 13)	1139.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	50.91	86.63	45.32	53.98	54.58	40.99	76.05	62.79	67.45
Merged-chr7-73452426-1	chr7	73451926	73452926	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081345, intron 32 of 38)	intron (NM_001081345, intron 32 of 38)	-76652.0	NR_040324	319783.0	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	12.59	18.89	17.57	24.96	12.13	26.53	13.73	9.29	9.37
Merged-chr6-124898127-1	chr6	124897627	124898627	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER102a|DNA|hAT-Charlie	-9927.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	42.9	9.22	7.4	27.66	5.6	12.86	20.07	10.17	5.0
Merged-chr9-75100528-1	chr9	75100028	75101028	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	29322.0	NM_010864	17918.0	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	4.0	3.23	1.85	4.05	2.8	0.0	1.06	0.44	2.5
Merged-chr9-118934043-1	chr9	118933543	118934543	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133710, intron 1 of 7)	ORR1D2|LTR|ERVL-MaLR	7507.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	12.01	4.61	5.55	2.7	1.87	5.63	4.22	3.98	2.5
Merged-chrX-152151897-1	chrX	152151397	152152397	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114664, intron 1 of 14)	intron (NM_001114664, intron 1 of 14)	7629.0	NM_001114664	245666.0	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	1.72	3.23	1.85	2.02	2.33	1.61	0.0	1.77	0.0
Merged-chr16-91374403-1	chr16	91373903	91374903	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	1620.0	NM_001110498	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	164.75	226.25	140.59	190.95	175.41	139.06	184.83	223.29	131.15
Merged-chr6-5497949-1	chr6	5497449	5498449	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1671.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	5.72	2.3	1.85	5.4	9.8	4.82	3.17	1.77	12.49
Merged-chr1-39893329-1	chr1	39892829	39893829	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-7584.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.0	5.99	1.85	4.72	3.27	0.0	1.06	1.77	1.87
Merged-chr1-161767357-1	chr1	161766857	161767857	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21138.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	8.01	4.61	8.32	3.37	0.47	4.82	4.22	3.1	1.87
Merged-chr4-108870236-1	chr4	108869736	108870736	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8834.0	NM_023537	69908.0	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	5.15	4.61	3.7	0.67	3.27	1.61	1.06	2.21	0.0
Merged-chrX-60021246-1	chrX	60020746	60021746	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	ORR1D2|LTR|ERVL-MaLR	21782.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	2.29	3.23	1.85	3.37	2.8	8.04	3.17	3.54	3.75
Merged-chr1-136051659-1	chr1	136051159	136052159	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001270609)	TTS (NM_001270609)	855.0	NM_001270609	226439.0	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	0.0	1.38	0.0	0.67	2.33	7.23	3.17	1.33	8.12
Merged-chr6-57499376-1	chr6	57498876	57499876	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	36050.0	NM_175523	243382.0	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.0	0.46	5.55	1.35	1.87	6.43	1.06	2.21	8.74
Merged-chr16-93884547-1	chr16	93884047	93885047	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028083, exon 2 of 14)	exon (NM_028083, exon 2 of 14)	646.0	NM_028083	110749.0	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	4.58	4.61	10.17	13.49	4.67	3.22	22.18	15.48	10.62
Merged-chr9-124025428-1	chr9	124024928	124025928	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009914, intron 1 of 1)	intron (NM_009914, intron 1 of 1)	3457.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	72.65	116.12	65.67	90.41	74.64	64.3	15.84	8.4	6.87
Merged-chr4-43966568-1	chr4	43966068	43967068	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027450, intron 1 of 4)	intron (NM_027450, intron 1 of 4)	8866.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	9.72	5.53	7.4	3.37	5.6	5.63	5.28	3.54	9.37
Merged-chr11-74652173-1	chr11	74651673	74652673	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2678.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	12.59	8.75	1.85	6.07	5.13	6.43	5.28	8.84	12.49
Merged-chr13-119616178-1	chr13	119615678	119616678	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7641.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	10.3	9.68	11.1	27.66	30.79	22.51	6.34	20.34	9.37
Merged-chr10-76350055-1	chr10	76349555	76350555	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-4764.0	NM_001081419	64451.0	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.0	4.15	3.7	6.75	2.33	8.04	0.0	2.65	1.87
Merged-chr13-36696503-1	chr13	36696003	36697003	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37974.0	NM_153529	68404.0	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.72	2.3	1.85	2.7	1.4	1.61	11.62	7.52	4.37
Merged-chr15-27666937-1	chr15	27666437	27667437	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	14605.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	67.5	66.35	70.3	60.05	59.25	88.42	61.26	56.16	38.72
Merged-chr10-118104182-1	chr10	118103682	118104682	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37605.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	104.11	115.66	56.42	157.88	159.55	95.65	102.45	110.98	70.57
Merged-chr2-119242467-1	chr2	119241967	119242967	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016907, intron 2 of 10)	intron (NM_016907, intron 2 of 10)	5107.0	NM_016907	20732.0	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	7.44	1.38	0.0	1.35	1.4	6.43	5.28	3.54	7.49
Merged-chr12-69356710-1	chr12	69356210	69357210	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025441, intron 1 of 32)	MIRb|SINE|MIR	466.0	NM_025441	66244.0	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	69.22	59.9	46.25	55.33	47.12	37.78	63.37	62.35	34.35
Merged-chr16-36798519-1	chr16	36798019	36799019	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134111, intron 5 of 5)	ORR1A3-int|LTR|ERVL-MaLR	10186.0	NM_001113405	106389.0	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	6.29	7.37	1.85	4.05	9.8	2.41	3.17	3.54	1.25
Merged-chr15-11966527-1	chr15	11966027	11967027	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040447)	promoter-TSS (NR_040447)	-535.0	NR_040447	73339.0	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	1.72	3.23	5.55	3.37	3.73	1.61	4.22	2.21	1.87
Merged-chr14-118621269-1	chr14	118620769	118621769	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163676, intron 7 of 29)	RLTR22_Mur|LTR|ERVK	-28797.0	NR_105815	102465208.0		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	10.87	13.36	10.17	10.8	15.39	5.63	6.34	6.19	12.49
Merged-chr7-25771226-1	chr7	25770726	25771726	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190974, intron 9 of 18)	intron (NM_001190974, intron 9 of 18)	-16467.0	NM_178089	232989.0	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	9.72	10.6	8.32	11.47	4.67	20.9	16.9	15.03	17.49
Merged-chr2-154687852-1	chr2	154687352	154688352	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	URR1A|DNA|hAT-Charlie	30826.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	12.01	16.59	18.5	21.59	20.53	33.76	23.24	22.11	13.74
Merged-chr6-72144854-1	chr6	72144354	72145354	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-21657.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	14.87	12.44	32.37	13.49	11.66	29.74	11.62	9.29	15.61
Merged-chr2-25185926-2	chr2	25185416	25186416	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	5158.0	NM_025980	67122.0	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	4.58	1.84	5.55	4.05	1.4	1.61	4.22	3.1	1.25
Merged-chr19-58904192-1	chr19	58903692	58904692	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	7567.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.57	0.46	1.85	1.35	5.13	1.61	4.22	0.44	0.0
Merged-chr10-18318647-1	chr10	18318147	18319147	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-83666.0	NM_144820	215814.0	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.57	1.38	0.0	2.7	1.87	0.0	2.11	0.88	7.49
Merged-chr11-45752056-1	chr11	45751556	45752556	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56027.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	40.04	56.68	14.8	57.35	46.65	57.07	29.57	32.28	34.97
Merged-chr5-124111183-1	chr5	124110683	124111683	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1138.0	NM_001361482	66627.0	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	17.73	22.12	17.57	19.57	17.26	30.54	21.12	38.03	20.61
Merged-chr7-35123687-1	chr7	35123187	35124187	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4394.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	19.45	6.91	37.92	10.12	6.53	16.88	9.51	8.84	13.74
Merged-chr2-164518005-1	chr2	164517505	164518505	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20480.0	NM_133779	78928.0	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	2.86	2.76	0.0	4.72	3.73	0.0	4.22	2.65	1.25
Merged-chr17-24658302-2	chr17	24657781	24658781	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001099664, exon 1 of 2)	exon (NM_001099664, exon 1 of 2)	144.0	NM_001099664	381073.0	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	5.72	2.3	5.55	4.72	2.33	6.43	2.11	1.33	9.99
Merged-chr4-134119929-1	chr4	134119429	134120429	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026257, intron 8 of 14)	intron (NM_026257, intron 8 of 14)	8824.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	5.72	4.61	6.47	4.05	1.87	3.22	19.01	10.17	5.62
Merged-chr4-7314586-1	chr4	7314086	7315086	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-246102.0	NR_040645	71510.0	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	9.15	9.68	20.35	7.42	7.0	12.86	4.22	4.86	2.5
Merged-chr1-118320883-1	chr1	118320383	118321383	+	600.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026472)	promoter-TSS (NM_026472)	-960.0	NM_026472	67949.0	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	4.0	2.3	0.0	2.7	1.87	1.61	3.17	1.33	5.0
Merged-chr13-31559276-1	chr13	31558776	31559776	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008239, exon 1 of 1)	exon (NM_008239, exon 1 of 1)	1106.0	NM_008239	15220.0	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	8.01	0.46	1.85	4.72	5.13	8.04	0.0	0.44	0.0
Merged-chr8-22713227-1	chr8	22712727	22713727	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6644.0	NM_001159774	16150.0	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	4.0	5.07	1.85	5.4	4.2	3.22	2.11	3.54	1.25
Merged-chr11-97469114-1	chr11	97468614	97469614	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021493, intron 11 of 18)	intron (NM_021493, intron 11 of 18)	18954.0	NM_021493	58996.0	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	7.44	2.3	3.7	6.75	1.4	1.61	2.11	3.1	1.25
Merged-chrX-102660867-1	chrX	102660367	102661367	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16621.0	NM_173021	18679.0	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	1.14	2.76	1.85	4.05	0.0	0.0	3.17	3.54	1.25
Merged-chr9-60826870-1	chr9	60826370	60827370	+	600.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	intron (NM_001357408, intron 1 of 19)	32428.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	8.58	18.89	1.85	28.34	13.53	13.66	8.45	3.98	5.0
Merged-chr2-71812986-2	chr2	71812488	71813488	+	599.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008397, intron 1 of 25)	intron (NM_008397, intron 1 of 25)	26049.0	NM_001277970	16403.0	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.0	4.61	3.7	4.72	1.87	1.61	3.17	1.33	1.25
Merged-chr10-99641999-3	chr10	99641505	99642505	+	599.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_038018)	promoter-TSS (NR_038018)	-85.0	NR_038018	100417125.0	Mm.391428	NR_038018	ENSMUSG00000112503	Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	9.15	3.23	0.0	1.35	4.2	0.0	2.11	2.21	1.25
Merged-chr6-58772205-2	chr6	58771713	58772713	+	599.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59252.0	NM_001361967	73998.0	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	6.29	0.92	0.0	4.72	2.8	1.61	6.34	2.21	2.5
Merged-chr16-3233869-2	chr16	3233318	3234318	+	599.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CTGTG)n|Simple_repeat|Simple_repeat	-358580.0	NM_146860	258859.0	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	2.86	1.38	24.05	10.8	7.46	6.43	1.06	3.98	20.61
Merged-chr2-129183985-2	chr2	129183490	129184490	+	599.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3317.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	15.45	13.82	22.2	15.52	4.67	13.66	13.73	15.92	8.74
Merged-chr9-122887662-1	chr9	122887162	122888162	+	599.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177505)	promoter-TSS (NM_001177505)	-809.0	NM_001177505	382118.0	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	20.59	28.11	9.25	12.14	18.19	18.49	31.69	33.6	23.73
Merged-chr16-45274758-1	chr16	45274258	45275258	+	599.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	50421.0	NM_177584	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.29	2.76	1.85	0.67	0.0	1.61	13.73	17.69	14.99
Merged-chr6-29533449-1	chr6	29532949	29533949	+	599.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252382, intron 2 of 8)	(GGA)n|Simple_repeat|Simple_repeat	4167.0	NM_001252382	27056.0	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	17.73	9.22	19.42	19.57	17.73	21.7	22.18	22.11	21.23
Merged-chr16-49755374-2	chr16	49754875	49755875	+	599.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028680, intron 6 of 10)	URR1A|DNA|hAT-Charlie	56081.0	NM_028680	73916.0	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	2.29	3.23	3.7	3.37	3.27	4.82	6.34	2.65	8.74
Merged-chr2-109893858-2	chr2	109893362	109894362	+	599.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011699, intron 1 of 4)	intron (NM_011699, intron 1 of 4)	2984.0	NM_011699	22343.0	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	11.44	3.23	9.25	10.12	5.13	5.63	11.62	3.54	9.99
Merged-chr5-137820935-2	chr5	137820430	137821430	+	599.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360023, intron 16 of 16)	Lx8b|LINE|L1	15348.0	NM_153510	231805.0	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	9.15	8.75	14.8	8.1	7.46	19.29	17.96	5.31	11.24
Merged-chr15-78244104-2	chr15	78243610	78244610	+	599.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008677)	promoter-TSS (NM_008677)	-701.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	41.19	50.23	49.95	39.81	31.72	48.23	39.08	37.14	34.35
Merged-chr1-159305195-1	chr1	159304695	159305695	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011931, intron 11 of 19)	MTD|LTR|ERVL-MaLR	11422.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	7.44	3.69	1.85	7.42	6.06	6.43	2.11	1.77	8.74
Merged-chr19-26622930-1	chr19	26622430	26623430	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011416, intron 2 of 32)	intron (NM_011416, intron 2 of 32)	17770.0	NM_011416	67155.0	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	4.58	4.15	7.4	11.47	6.06	5.63	5.28	3.54	2.5
Merged-chr9-90447136-2	chr9	90446651	90447651	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-176382.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	2.86	3.69	5.55	4.72	7.93	3.22	2.11	2.21	1.25
Merged-chr3-21936936-2	chr3	21936401	21937401	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139751.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	24.6	37.78	45.32	33.06	24.26	21.7	55.98	44.22	22.48
Merged-chr13-30642262-2	chr13	30641773	30642773	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-17786.0	NM_001037955	105352.0	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	10.3	3.69	0.92	5.4	2.8	1.61	6.34	6.63	6.87
Merged-chr5-3382463-1	chr5	3381963	3382963	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	38570.0	NM_009873	12571.0	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	17.73	26.26	14.8	30.36	30.32	12.86	25.35	24.32	16.24
Merged-chr11-110483379-2	chr11	110482898	110483898	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 2 of 11)	intron (NM_001356352, intron 2 of 11)	4058.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	3.43	0.0	1.85	7.42	4.2	3.22	4.22	0.44	6.25
Merged-chr12-103532973-2	chr12	103532427	103533427	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028980, intron 1 of 24)	intron (NM_028980, intron 1 of 24)	362.0	NM_028980	74521.0	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	4.58	2.3	5.55	6.07	2.8	5.63	3.17	0.88	5.0
Merged-chr4-55098533-1	chr4	55098033	55099033	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150588.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	5.15	2.3	4.62	4.05	0.93	2.41	1.06	1.77	5.0
Merged-chr11-61147384-1	chr11	61146884	61147884	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021349, intron 3 of 3)	CpG	6549.0	NM_021349	57916.0	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	5.72	2.76	1.85	6.07	4.67	4.02	7.39	3.54	0.0
Merged-chr7-140063295-1	chr7	140062795	140063795	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14207.0	NM_001347609	17703.0	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.57	3.23	0.0	3.37	0.47	1.61	2.11	0.0	4.37
Merged-chr1-174175669-1	chr1	174175169	174176169	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011465, intron 2 of 51)	intron (NM_011465, intron 2 of 51)	2893.0	NM_011465	20739.0	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	2.86	6.45	3.7	8.1	6.53	3.22	1.06	5.31	3.75
Merged-chr6-54699215-1	chr6	54698715	54699715	+	599.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289740, exon 3 of 3)	3' UTR (NM_001289740, exon 3 of 3)	17591.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	2.29	2.76	5.55	0.67	2.33	0.8	15.84	16.8	6.25
Merged-chr4-136887153-2	chr4	136886633	136887633	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009777)	promoter-TSS (NM_009777)	-956.0	NM_009777	12260.0	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	164.18	197.68	216.44	127.52	119.89	133.43	246.09	226.83	138.02
Merged-chr9-41159167-1	chr9	41158667	41159667	+	599.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1105.0	NM_176860	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	9.72	21.66	18.5	10.8	8.4	24.11	46.47	26.97	26.23
Merged-chr1-52501564-1	chr1	52501064	52502064	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1116.0	NM_008667	17936.0	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	28.03	42.39	25.9	22.94	16.79	23.31	16.9	18.57	19.36
Merged-chr13-99138952-1	chr13	99138452	99139452	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-45871.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	20.02	13.82	11.1	10.8	14.46	10.45	7.39	3.98	9.37
Merged-chr7-97751599-2	chr7	97751166	97752166	+	599.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-13419.0	NM_175105	66333.0	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	17.16	13.36	37.0	14.17	11.2	12.06	13.73	17.24	13.12
Merged-chr11-97698814-3	chr11	97698308	97699308	+	599.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163307, intron 1 of 10)	intron (NM_001163307, intron 1 of 10)	576.0	NM_001163307	22658.0	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	1.14	3.23	3.7	5.4	1.4	2.41	3.17	2.21	2.5
Merged-chr8-56304313-2	chr8	56303816	56304816	+	599.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008278, intron 3 of 6)	URR1A|DNA|hAT-Charlie	9764.0	NM_008278	15446.0	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	45.76	57.6	57.35	34.41	42.45	52.25	39.08	46.87	39.35
Merged-chr5-88572117-2	chr5	88571643	88572643	+	599.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289774, intron 1 of 17)	intron (NM_001289774, intron 1 of 17)	7103.0	NM_001289775	52822.0	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	34.9	23.04	37.0	30.36	20.06	40.99	26.4	27.41	23.11
Merged-chr16-50373921-1	chr16	50373421	50374421	+	599.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027444, intron 2 of 16)	intron (NM_027444, intron 2 of 16)	58468.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	8.01	8.29	15.72	4.05	4.2	17.68	8.45	4.42	3.75
Merged-chr1-131043025-1	chr1	131042525	131043525	+	599.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23180.0	NM_010548	16153.0	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	4.0	2.76	11.1	4.72	0.47	3.22	4.22	2.65	3.75
Merged-chr1-9541426-2	chr1	9540923	9541923	+	599.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3985.0	NM_021511	59014.0	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	4.58	1.84	1.85	2.02	0.47	1.61	4.22	1.77	3.75
Merged-chr6-122826383-2	chr6	122825870	122826870	+	599.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	-5007.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	9.15	6.45	3.7	13.49	7.46	8.04	8.45	4.42	9.37
Merged-chr3-108204132-3	chr3	108203603	108204603	+	599.111084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175183, intron 10 of 11)	intron (NM_175183, intron 10 of 11)	-3269.0	NM_001081320	72023.0	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.57	2.3	0.92	1.35	0.47	3.22	5.28	0.0	5.0
Merged-chr10-95533110-2	chr10	95532609	95533609	+	599.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080560, intron 1 of 3)	RLTR17|LTR|ERVK	17947.0	NM_080560	93765.0	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	157.31	134.09	115.62	165.98	106.36	122.98	210.18	217.99	85.56
Merged-chr18-4257693-1	chr18	4257193	4258193	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	91861.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	44.05	68.2	61.97	45.21	68.58	76.36	39.08	35.82	36.22
Merged-chr11-98952019-1	chr11	98951519	98952519	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-8452.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	30.32	21.66	37.92	22.27	11.2	33.76	28.52	27.86	25.61
Merged-chr6-88242694-1	chr6	88242194	88243194	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20426.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	1.72	1.38	1.85	1.35	2.8	3.22	4.22	0.88	0.0
Merged-chr14-117716539-1	chr14	117716039	117717039	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	L1_Mur2|LINE|L1	237308.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	1.72	5.07	4.62	3.37	2.8	0.0	11.62	11.05	3.75
Merged-chr2-118702950-2	chr2	118702437	118703437	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	1026.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	4.58	2.76	7.4	4.05	2.8	4.82	3.17	0.0	7.49
Merged-chr12-17783040-1	chr12	17782540	17783540	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361645, intron 2 of 4)	intron (NM_001361645, intron 2 of 4)	92231.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.01	7.83	4.62	2.7	7.93	11.25	9.51	9.29	9.99
Merged-chr7-120670725-1	chr7	120670225	120671225	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001040137)	promoter-TSS (NM_001040137)	-382.0	NM_001040136	67983.0	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	5.15	2.76	0.92	4.05	0.93	1.61	6.34	3.54	3.75
Merged-chr7-141563242-1	chr7	141562742	141563742	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	1062.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	33.18	35.94	42.55	41.83	35.45	49.83	67.6	45.1	42.47
Merged-chr13-81781482-1	chr13	81780982	81781982	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-1765.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	2.86	4.15	6.47	2.7	4.67	1.61	6.34	2.65	5.0
Merged-chr1-152770948-1	chr1	152770448	152771448	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026369, intron 2 of 3)	intron (NM_026369, intron 2 of 3)	4406.0	NM_026369	67771.0	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	11.44	8.29	15.72	12.14	10.26	14.47	12.67	7.52	12.49
Merged-chr16-17474203-1	chr16	17473703	17474703	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007764, intron 2 of 2)	intron (NM_007764, intron 2 of 2)	-15474.0	NM_175178	72168.0	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	4.0	3.23	10.17	4.72	4.67	4.82	4.22	1.33	3.75
Merged-chr15-100601947-1	chr15	100601447	100602447	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	-1963.0	NM_001304965	19009.0	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.58	4.61	9.25	8.1	1.87	5.63	2.11	4.86	2.5
Merged-chr5-23615735-1	chr5	23615235	23616235	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152854, intron 2 of 14)	intron (NR_152854, intron 2 of 14)	836.0	NM_001359175	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	33.75	34.56	12.95	40.48	58.78	21.7	39.08	33.16	19.98
Merged-chr6-87733781-1	chr6	87733281	87734281	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159697, intron 2 of 7)	intron (NM_001159697, intron 2 of 7)	2912.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	2.86	3.23	9.25	12.14	7.46	6.43	4.22	7.96	5.0
Merged-chr11-97781945-1	chr11	97781445	97782445	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_028078)	promoter-TSS (NR_028078)	-179.0	NR_028078	100302498.0	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	199.65	177.4	121.17	202.42	178.67	135.84	146.81	145.92	101.17
Merged-chr12-117724150-1	chr12	117723650	117724650	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 19 of 27)	intron (NM_175930, intron 19 of 27)	-119711.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	1.72	1.84	3.7	5.4	1.87	1.61	3.17	6.19	0.0
Merged-chr15-102257681-1	chr15	102257181	102258181	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011244)	promoter-TSS (NM_011244)	-159.0	NM_011244	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	6.29	3.23	3.7	7.42	2.33	4.82	4.22	0.0	1.25
Merged-chr3-141492112-1	chr3	141491612	141492612	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	26548.0	NM_009472	22253.0	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	10.87	7.37	7.4	6.75	5.13	3.22	11.62	18.13	25.61
Merged-chr18-31805293-1	chr18	31804793	31805793	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	intron (NM_028866, intron 1 of 21)	1236.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	21.74	33.18	16.65	16.87	15.39	12.86	16.9	8.84	12.49
Merged-chr19-10258601-1	chr19	10258101	10259101	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 9 of 19)	intron (NM_198114, intron 9 of 19)	-17853.0	NM_001033481	225908.0	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	6.29	2.3	2.77	3.37	0.47	2.41	0.0	0.88	2.5
Merged-chr12-30257800-1	chr12	30257300	30258300	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324521, intron 8 of 15)	intron (NM_001324521, intron 8 of 15)	115575.0	NM_172951	268534.0	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	6.29	5.07	9.25	6.75	3.73	9.65	0.0	2.21	5.0
Merged-chr7-30285525-1	chr7	30285025	30286025	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_144498, intron 2 of 2)	intron (NR_144498, intron 2 of 2)	-5104.0	NM_146186	233064.0	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik|b2b1508Clo	WD repeat domain 62	protein-coding	4.0	5.99	10.17	8.1	4.2	16.08	6.34	1.77	3.75
Merged-chr18-82872379-1	chr18	82871879	82872879	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16482.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	17.73	8.75	9.25	18.89	12.6	23.31	11.62	12.38	13.74
Merged-chr2-168469309-1	chr2	168468809	168469809	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	121056.0	NM_001291178	18019.0	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	2.86	2.3	1.85	2.02	0.93	3.22	2.11	0.0	2.5
Merged-chr12-38815083-1	chr12	38814583	38815583	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163154, intron 2 of 9)	intron (NM_001163154, intron 2 of 9)	31372.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	8.01	9.22	5.55	9.45	1.4	6.43	4.22	3.1	6.87
Merged-chr15-8577763-1	chr15	8577263	8578263	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	133044.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	3.43	1.38	0.92	2.02	0.93	4.82	5.28	0.44	1.87
Merged-chr2-102744519-1	chr2	102744019	102745019	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_153852, exon 3 of 3)	non-coding (NR_153852, exon 3 of 3)	2241.0	NR_153852	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	48.62	61.28	38.85	41.83	28.46	37.78	28.52	19.01	44.34
Merged-chr10-80121806-1	chr10	80121306	80122306	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301853, intron 1 of 8)	MTEb|LTR|ERVL-MaLR	6003.0	NM_001301854	20869.0	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	4.0	5.53	9.25	7.42	2.33	4.02	3.17	3.1	2.5
Merged-chr11-115477144-1	chr11	115476644	115477644	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177778, intron 2 of 2)	B1_Mur1|SINE|Alu	1477.0	NM_001361594	276905.0	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	110.98	123.95	98.97	82.32	61.58	94.85	80.27	98.6	69.32
Merged-chr11-70014990-1	chr11	70014490	70015490	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_017366, intron 2 of 19)	intron (NM_017366, intron 2 of 19)	438.0	NM_017366	11370.0	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	69.22	38.71	55.5	77.59	72.78	45.82	53.87	50.41	16.86
Merged-chr7-141575738-1	chr7	141575238	141576238	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357068, intron 1 of 21)	intron (NM_001357068, intron 1 of 21)	13558.0	NM_007459	11772.0	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	10.87	14.28	19.42	18.22	11.66	21.7	11.62	13.27	18.74
Merged-chr10-94464122-1	chr10	94463622	94464622	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MIRc|SINE|MIR	-50735.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	81.8	72.8	39.77	106.61	74.17	60.28	48.58	55.71	23.11
Merged-chr4-150855812-1	chr4	150855312	150856312	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040649)	promoter-TSS (NR_040649)	742.0	NM_133753	74155.0	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	115.55	91.7	97.12	93.79	68.11	77.97	82.38	62.35	72.45
Merged-chr5-107522142-1	chr5	107521642	107522642	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-12569.0	NM_182745	76421.0	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	3.43	3.23	14.8	5.4	4.2	7.23	4.22	0.88	6.25
Merged-chr17-78836291-1	chr17	78835791	78836791	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081179)	promoter-TSS (NM_001081179)	775.0	NM_181649	53951.0	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	10.3	19.35	18.5	20.24	16.79	24.92	23.24	26.53	18.11
Merged-chr18-82538266-1	chr18	82537766	82538766	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-16197.0	NM_001025258	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	13.73	15.67	6.47	8.77	2.8	4.02	7.39	2.65	3.75
Merged-chr3-57706245-1	chr3	57705745	57706745	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-13708.0	NM_001033349	242037.0	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.57	0.92	1.85	4.05	0.93	4.82	3.17	1.77	0.0
Merged-chr1-169532335-1	chr1	169531835	169532835	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-871.0	NM_001355159	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	9.15	17.51	12.02	10.12	14.93	16.88	10.56	16.36	16.86
Merged-chr17-28163878-1	chr17	28163378	28164378	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004366, intron 10 of 21)	intron (NM_001004366, intron 10 of 21)	-13318.0	NM_001357995	224656.0	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	6.86	0.92	0.0	4.72	1.4	1.61	1.06	3.98	1.25
Merged-chr15-44623438-1	chr15	44622938	44623938	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019480, intron 1 of 6)	intron (NM_019480, intron 1 of 6)	3797.0	NM_019480	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	7.44	3.69	3.7	2.7	3.27	8.04	3.17	2.21	8.74
Merged-chr17-69106195-1	chr17	69105695	69106695	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355732, intron 1 of 21)	intron (NM_001355732, intron 1 of 21)	30518.0	NM_001355732	13823.0	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	5.72	3.23	0.0	2.02	1.4	1.61	2.11	4.42	1.25
Merged-chr19-10940561-1	chr19	10940061	10941061	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023731)	TTS (NM_023731)	3401.0	NM_009962	14764.0	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	4.58	0.46	0.0	4.05	3.73	1.61	5.28	3.1	1.25
Merged-chr16-75983005-1	chr16	75982505	75983505	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-17779.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	6.86	2.3	7.4	12.14	6.53	4.82	7.39	6.19	12.49
Merged-chr9-91388971-1	chr9	91388471	91389471	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009576, exon 5 of 5)	3' UTR (NM_009576, exon 5 of 5)	19999.0	NM_009576	22774.0	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	5.72	3.23	0.0	0.67	0.93	0.0	0.0	4.86	4.37
Merged-chr7-28954979-1	chr7	28954479	28955479	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021895, intron 1 of 20)	intron (NM_021895, intron 1 of 20)	7353.0	NM_001360549	60595.0	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	3.43	4.61	22.2	4.72	3.27	6.43	6.34	0.0	1.25
Merged-chr19-45205943-1	chr19	45205443	45206443	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29293.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	2.29	1.84	3.7	2.02	0.93	0.0	0.0	0.88	2.5
Merged-chr4-109394655-1	chr4	109394155	109395155	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11602.0	NR_131195	102635290.0	Mm.427859	NR_131195		Ttc39aos1	Gm12750|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.57	1.38	9.25	1.35	0.47	5.63	1.06	0.44	1.25
Merged-chr12-13562826-1	chr12	13562326	13563326	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027706, intron 50 of 51)	intron (NM_027706, intron 50 of 51)	64820.0	NR_136761	102639399.0	Mm.122052	NR_136761	ENSMUSG00000113666	Gm35725	-	predicted gene, 35725	ncRNA	9.72	14.28	8.32	13.49	12.6	17.68	3.17	3.98	9.37
Merged-chr16-23506032-1	chr16	23505532	23506532	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359083, intron 2 of 10)	intron (NM_001359083, intron 2 of 10)	14783.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	25.74	10.6	24.05	14.17	13.06	18.49	15.84	4.86	8.74
Merged-chr16-76416598-2	chr16	76416098	76417098	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-42771.0	NM_001358238	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.86	14.28	5.55	8.77	11.2	3.22	12.67	15.48	9.99
Merged-chr4-128777038-1	chr4	128776538	128777538	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081098, intron 8 of 8)	intron (NM_001081098, intron 8 of 8)	17780.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	5.72	3.69	1.85	4.72	2.33	4.02	9.51	0.0	5.0
Merged-chr4-124657882-1	chr4	124657382	124658382	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_011141, exon 1 of 1)	exon (NM_011141, exon 1 of 1)	236.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	1.72	0.92	0.0	6.07	0.0	1.61	4.22	0.0	0.0
Merged-chr3-154330391-1	chr3	154329891	154330891	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040387)	promoter-TSS (NR_040387)	169.0	NM_010713	16875.0	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	2.86	1.38	0.0	2.02	0.47	1.61	6.34	1.33	1.25
Merged-chrX-13844812-1	chrX	13844312	13845312	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037311, intron 4 of 4)	intron (NR_037311, intron 4 of 4)	1744.0	NM_001284505	12361.0	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	4.0	5.53	1.85	9.45	7.46	9.65	4.22	5.75	6.25
Merged-chr6-47587264-1	chr6	47586764	47587764	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007971, intron 1 of 19)	intron (NM_007971, intron 1 of 19)	7766.0	NM_001146689	14056.0	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	3.43	4.61	5.55	4.05	2.8	3.22	10.56	7.96	5.0
Merged-chr15-37941625-1	chr15	37941125	37942125	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357023, intron 5 of 8)	intron (NM_001357023, intron 5 of 8)	19231.0	NM_001357023	382985.0	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	2.86	1.84	1.85	6.07	7.46	6.43	2.11	2.21	0.0
Merged-chr7-75667208-1	chr7	75666708	75667708	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-181130.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	12.01	15.67	5.55	20.24	14.46	14.47	11.62	5.31	3.75
Merged-chr8-22167206-1	chr8	22166706	22167706	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011848)	promoter-TSS (NM_011848)	-771.0	NM_011848	23954.0	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	9.72	5.53	4.62	14.17	7.46	7.23	7.39	5.75	4.37
Merged-chr19-5085611-1	chr19	5085111	5086111	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001001885)	promoter-TSS (NM_001001885)	-134.0	NM_001001885	381199.0	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	2.29	1.38	9.25	4.72	4.67	1.61	2.11	3.1	3.12
Merged-chr1-64599284-1	chr1	64598784	64599784	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	17884.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	35.47	57.6	30.52	27.66	33.59	26.53	28.52	42.45	29.35
Merged-chr7-44860751-1	chr7	44860251	44861251	+	599.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290764, intron 8 of 16)	intron (NM_001290764, intron 8 of 16)	3348.0	NM_001290767	59047.0	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	3.43	2.3	3.7	5.4	3.27	4.82	7.39	3.98	2.5
Merged-chr14-25587024-1	chr14	25586524	25587524	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	220.0	NR_033492	77592.0	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	10.3	13.82	5.55	6.75	16.33	7.23	9.51	18.57	5.0
Merged-chr1-40064702-2	chr1	40064209	40065209	+	599.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20005.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	8.58	9.22	4.62	2.02	4.2	2.41	5.28	1.33	5.0
Merged-chr11-11548031-1	chr11	11547531	11548531	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON26|Unknown|Unknown	58765.0	NM_028669	73862.0	Mm.159077	NM_028669	ENSMUSG00000020191	Spata48	4930415F15Rik	spermatogenesis associated 48	protein-coding	5.15	7.83	6.47	8.1	4.2	4.82	11.62	5.75	11.24
Merged-chr17-72920253-1	chr17	72919753	72920753	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029999, intron 1 of 2)	intron (NM_029999, intron 1 of 2)	1948.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	21.17	14.28	12.95	17.54	14.46	10.45	7.39	8.84	11.24
Merged-chr14-75184530-1	chr14	75184030	75185030	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	RMER1B|Other|Other	48105.0	NM_008879	18826.0	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	24.03	32.25	34.22	30.36	26.12	21.7	46.47	36.7	28.73
Merged-chr10-68279079-1	chr10	68278579	68279579	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-353.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	88.67	110.13	43.47	98.51	77.44	90.02	161.6	158.3	68.07
Merged-chr13-81658874-1	chr13	81658374	81659374	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030257, intron 1 of 2)	intron (NM_030257, intron 1 of 2)	1068.0	NM_030257	80289.0	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	10.3	25.34	18.5	13.49	15.86	16.88	22.18	14.59	7.49
Merged-chr11-80158970-1	chr11	80158470	80159470	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172133, intron 3 of 10)	intron (NM_172133, intron 3 of 10)	4808.0	NM_172133	216991.0	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	24.03	29.95	29.6	23.62	29.86	63.5	40.14	46.87	31.85
Merged-chr11-79993777-1	chr11	79993277	79994277	+	599.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199196, intron 1 of 15)	CpG	671.0	NM_199196	52615.0	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	SUZ12 polycomb repressive complex 2 subunit	protein-coding	84.09	47.92	61.05	72.87	42.45	42.6	77.1	44.66	30.6
Merged-chr13-65127593-2	chr13	65127078	65128078	+	598.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-14596.0	NM_133680	66631.0	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	5.15	0.92	0.92	0.67	1.87	1.61	2.11	1.33	3.75
Merged-chr1-80671908-3	chr1	80671362	80672362	+	598.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	-6510.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	34.9	27.19	31.45	19.57	9.33	24.11	23.24	11.94	22.48
Merged-chr4-116824726-3	chr4	116824197	116825197	+	598.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3189.0	NM_146256	242642.0	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	25.74	25.34	21.27	52.63	36.85	38.58	31.69	42.01	27.48
Merged-chr9-114925743-2	chr9	114925236	114926236	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175380, intron 1 of 7)	intron (NM_175380, intron 1 of 7)	8251.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	8.01	1.38	7.4	10.12	2.33	4.82	8.45	5.31	2.5
Merged-chr1-65185758-2	chr1	65185257	65186257	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011086)	promoter-TSS (NM_011086)	722.0	NM_001111320	15926.0	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	141.3	134.09	53.65	164.63	250.52	102.88	171.1	258.67	74.94
Merged-chr8-61928977-2	chr8	61928466	61929466	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001293783, intron 1 of 37)	intron (NM_001293783, intron 1 of 37)	879.0	NM_001293783	234311.0	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	114.98	164.96	63.82	135.62	127.82	101.28	155.26	172.45	92.43
Merged-chr17-70986985-2	chr17	70986494	70987494	+	598.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023402, intron 1 of 3)	intron (NM_023402, intron 1 of 3)	3522.0	NM_023402	67938.0	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	46.34	57.14	35.15	70.17	39.65	60.28	55.98	52.18	24.98
Merged-chr17-31093579-1	chr17	31093079	31094079	+	598.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009593, intron 3 of 14)	intron (NM_009593, intron 3 of 14)	35885.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	4.58	7.83	5.55	12.82	8.86	16.88	5.28	5.31	13.12
Merged-chr5-110101277-3	chr5	110100793	110101793	+	598.611084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001281812, intron 2 of 6)	intron (NM_001281812, intron 2 of 6)	734.0	NM_001281812	403178.0	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	6.86	5.53	11.1	8.1	3.27	3.22	6.34	5.31	5.0
Merged-chr11-116406307-1	chr11	116405807	116406807	+	598.599976	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 1 of 18)	L1MB7|LINE|L1	6725.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	5.15	3.69	3.7	2.02	6.53	3.22	10.56	10.61	8.12
Merged-chr2-159950382-2	chr2	159949882	159950882	+	598.541626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_040498, intron 1 of 6)	intron (NR_040498, intron 1 of 6)	3041.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	4.58	6.45	5.55	11.47	4.67	3.22	4.22	2.65	1.25
Merged-chr13-23620244-2	chr13	23619793	23620793	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177653, intron 1 of 1)	intron (NM_001177653, intron 1 of 1)	801.0	NM_001177653	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	72.65	75.57	55.5	43.18	56.91	36.17	76.05	126.46	51.21
Merged-chr8-106507901-1	chr8	106507401	106508401	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-2951.0	NM_007665	12560.0	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	6.86	1.84	5.55	0.67	3.73	2.41	1.06	1.33	1.25
Merged-chr5-148494785-2	chr5	148494291	148495291	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56882.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	75.51	46.08	29.6	77.59	49.92	49.83	54.92	46.43	32.48
Merged-chr10-54059309-2	chr10	54058794	54059794	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008548, intron 2 of 12)	intron (NM_008548, intron 2 of 12)	16502.0	NM_008548	17155.0	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	20.02	9.68	11.1	9.45	4.67	13.66	10.56	4.42	6.25
Merged-chr15-64091985-1	chr15	64091485	64092485	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276461, intron 28 of 28)	intron (NM_001276461, intron 28 of 28)	-31537.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	13.16	8.29	17.57	23.62	13.53	15.27	10.56	7.07	0.62
Merged-chr1-177248836-1	chr1	177248336	177249336	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011785)	promoter-TSS (NM_011785)	-69.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	14.87	11.52	20.35	12.82	16.79	22.51	12.67	6.63	9.37
Merged-chr10-127615900-1	chr10	127615400	127616400	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5248.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	20.59	26.73	49.02	39.13	45.25	109.32	62.31	47.31	48.71
Merged-chr7-99139419-2	chr7	99138917	99139917	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	1727.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	59.49	52.07	44.4	72.19	44.78	55.46	77.1	82.24	58.08
Merged-chr2-70824705-1	chr2	70824205	70825205	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172664, intron 1 of 19)	intron (NM_172664, intron 1 of 19)	775.0	NM_172664	228012.0	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	130.43	129.48	132.27	184.2	146.95	149.5	161.6	119.83	96.18
Merged-chr16-21837815-2	chr16	21837326	21838326	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	43479.0	NR_037957	100043489.0	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	4.0	3.69	9.25	6.07	4.2	5.63	3.17	2.65	4.37
Merged-chr11-48808378-2	chr11	48807890	48808890	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145377, intron 4 of 5)	intron (NM_145377, intron 4 of 5)	5251.0	NR_028564	100216540.0		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	36.04	41.93	48.1	29.69	33.59	65.91	34.85	42.45	38.72
Merged-chr13-112509712-1	chr13	112509212	112510212	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45642.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	1.14	6.91	0.0	4.72	2.8	2.41	8.45	2.21	4.37
Merged-chr6-38640749-2	chr6	38640249	38641249	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-3510.0	NM_001033171	74253.0	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	21.17	12.44	5.55	19.57	14.93	15.27	11.62	16.8	9.37
Merged-chr14-62222894-2	chr14	62222395	62223395	+	598.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	70084.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	20.59	8.75	5.55	11.47	6.53	22.51	6.34	5.75	11.24
Merged-chr17-35265811-2	chr17	35265333	35266333	+	598.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010380, exon 4 of 8)	exon (NM_010380, exon 4 of 8)	2710.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	39.47	24.88	2.77	23.62	4.67	8.04	15.84	13.27	13.12
Merged-chr3-97294855-2	chr3	97294370	97295370	+	598.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67506.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	8.01	10.14	5.55	6.07	4.67	4.82	6.34	3.1	3.75
Merged-chr16-57543489-1	chr16	57542989	57543989	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-5753.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	8.01	9.22	16.65	8.77	7.0	17.68	4.22	9.73	1.87
Merged-chr13-97523944-3	chr13	97523441	97524441	+	598.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36059.0	NR_046157	328314.0	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	3.43	1.84	1.85	4.05	6.53	6.43	14.79	7.07	12.49
Merged-chr18-67286233-1	chr18	67285733	67286733	+	598.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2990.0	NM_053261	114663.0	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	1.72	1.84	3.7	3.37	0.93	4.82	4.22	2.21	3.12
Merged-chr4-62353655-1	chr4	62353155	62354155	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355385, intron 1 of 27)	intron (NM_001355385, intron 1 of 27)	6941.0	NM_001355385	338355.0	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.86	8.75	9.25	10.8	13.53	24.11	12.67	11.05	14.99
Merged-chr11-94388863-1	chr11	94388363	94389363	+	598.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	4113.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	47.48	51.15	48.1	91.09	47.58	74.75	73.93	73.4	43.09
Merged-chr1-155218253-2	chr1	155217731	155218731	+	598.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59528.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	7.44	0.46	0.0	4.05	2.8	0.0	2.11	0.44	0.0
Merged-chr4-132624412-2	chr4	132623912	132624912	+	598.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-14634.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	15.45	5.53	5.55	16.87	10.26	16.88	26.4	30.95	13.74
Merged-chr18-68905350-1	chr18	68904850	68905850	+	598.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038051, intron 3 of 6)	intron (NR_038051, intron 3 of 6)	46178.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	12.59	9.22	8.32	26.31	21.93	21.7	3.17	2.21	1.25
Merged-chr12-85601949-2	chr12	85601413	85602413	+	598.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205053, intron 1 of 3)	intron (NM_001205053, intron 1 of 3)	1895.0	NM_001205053	81703.0	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	74.94	60.36	48.1	91.09	62.98	59.48	69.71	92.41	60.58
Merged-chr9-52047264-2	chr9	52046769	52047769	+	598.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001104617)	promoter-TSS (NM_001104617)	119.0	NM_001104616	19684.0	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	18.88	31.79	20.35	32.39	27.06	42.6	20.07	18.57	15.61
Merged-chr1-86018411-3	chr1	86017910	86018910	+	598.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-3532.0	NM_001122732	70060.0	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	3.43	0.92	11.1	2.7	1.87	3.22	1.06	3.98	1.25
Merged-chr13-56633854-1	chr13	56633354	56634354	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155548, intron 12 of 16)	intron (NR_155548, intron 12 of 16)	24268.0	NR_155548	21810.0	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	13.16	17.97	30.52	14.17	16.33	27.33	24.29	14.15	25.61
Merged-chr9-25571038-1	chr9	25570538	25571538	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89441.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	62.93	76.49	36.07	99.18	69.04	52.25	71.82	71.63	34.97
Merged-chr3-83881282-1	chr3	83880782	83881782	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-39674.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	2.86	1.38	6.47	4.72	3.27	7.23	4.22	2.21	8.74
Merged-chr9-21014433-1	chr9	21013933	21014933	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1507.0	NM_010493	15894.0	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	52.06	31.79	16.65	48.58	17.73	36.97	41.19	26.53	26.23
Merged-chr7-109218346-1	chr7	109217846	109218846	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43139.0	NM_001302205	109594.0	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.0	2.3	4.62	0.67	1.87	1.61	1.06	0.44	0.0
Merged-chr3-51629212-1	chr3	51628712	51629712	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31967.0	NM_174995	211666.0	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	6.29	5.07	8.32	6.75	1.87	1.61	4.22	1.77	0.0
Merged-chr15-30512973-1	chr15	30512473	30513473	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 3 of 21)	intron (NM_001355502, intron 3 of 21)	340380.0	NM_008729	18163.0	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	1.72	2.76	0.0	4.72	3.73	0.0	4.22	1.77	3.75
Merged-chr17-13591028-1	chr17	13590528	13591528	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-36934.0	NR_045437	72578.0	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	14.3	5.07	20.35	18.89	7.93	4.82	45.42	13.71	41.84
Merged-chr6-28822343-1	chr6	28821843	28822843	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	9404.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	8.01	5.99	8.32	3.37	4.2	4.82	4.22	7.96	3.75
Merged-chr19-6950917-1	chr19	6950417	6951417	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285453, intron 3 of 3)	intron (NM_001285453, intron 3 of 3)	8355.0	NM_001285453	12015.0	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	79.52	64.51	67.52	60.05	69.04	67.52	86.61	59.25	78.07
Merged-chr11-70221733-1	chr11	70221233	70222233	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172371)	promoter-TSS (NM_172371)	-739.0	NM_172371	69309.0	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	48.05	64.05	37.0	52.63	55.98	67.52	70.76	70.75	43.72
Merged-chrX-169304136-1	chrX	169303636	169304636	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_109847, exon 15 of 15)	non-coding (NR_109847, exon 15 of 15)	16236.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	2.29	4.15	0.0	3.37	4.2	1.61	1.06	4.86	6.25
Merged-chr5-129016629-1	chr5	129016129	129017129	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-3527.0	NM_009391	19384.0	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	11.44	16.13	25.9	6.07	4.2	11.25	3.17	3.1	5.0
Merged-chr3-88467286-3	chr3	88466782	88467782	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15-int|LTR|ERVL	-6100.0	NM_001163489	20351.0	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	2.86	5.99	1.85	6.75	0.93	4.82	10.56	2.65	7.49
Merged-chrX-71493513-1	chrX	71493013	71494013	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138309)	promoter-TSS (NM_138309)	-664.0	NM_001199349	171486.0	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	6.86	16.13	16.65	27.66	14.93	19.29	13.73	11.5	6.87
Merged-chr1-182108693-1	chr1	182108193	182109193	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16044.0	NM_012058	27058.0	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	7.44	1.38	3.7	5.4	3.27	8.04	4.22	4.86	5.0
Merged-chr7-28867000-1	chr7	28866500	28867500	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008496)	TTS (NM_008496)	2614.0	NM_008496	16858.0	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	6.86	3.23	10.17	3.37	7.0	10.45	4.22	9.29	3.12
Merged-chr7-105412042-1	chr7	105411542	105412542	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7474.0	NM_001033317	233649.0	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	1.72	1.38	1.85	3.37	2.33	1.61	1.06	2.21	0.0
Merged-chr17-35826621-1	chr17	35826121	35827121	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008027, intron 8 of 12)	intron (NM_008027, intron 8 of 12)	3264.0	NM_008027	14251.0	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	5.15	1.38	1.85	5.4	2.8	0.8	3.17	4.42	2.5
Merged-chrX-142380151-1	chrX	142379651	142380651	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033600, intron 1 of 15)	intron (NM_001033600, intron 1 of 15)	10384.0	NM_001033600	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	7.44	10.6	10.17	11.47	6.06	0.0	8.45	9.73	6.25
Merged-chr1-37322945-2	chr1	37322465	37323465	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030266, intron 1 of 25)	MIRc|SINE|MIR	23127.0	NM_001290797	269180.0	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	6.86	7.83	10.17	7.42	5.6	5.63	3.17	2.21	5.62
Merged-chr11-53773660-1	chr11	53773160	53774160	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001159396, exon 4 of 10)	exon (NM_001159396, exon 4 of 10)	3187.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	46.91	28.11	35.15	17.54	15.39	31.35	51.75	49.96	29.35
Merged-chr2-129582261-1	chr2	129581761	129582761	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10578.0	NM_001291020	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	1.72	1.38	3.7	10.8	6.53	6.43	2.11	0.44	1.25
Merged-chr13-60625967-1	chr13	60625467	60626467	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	23756.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	8.58	26.26	23.12	32.39	30.79	59.48	28.52	16.36	18.74
Merged-chr3-95906323-1	chr3	95905823	95906823	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1638.0	NM_001355750	23831.0	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|CA-XIV|Ca14	carbonic anhydrase 14	protein-coding	4.0	0.92	4.62	1.35	5.6	0.0	5.28	0.88	5.0
Merged-chr12-3926301-1	chr12	3925801	3926801	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28644.0	NM_001278581	18976.0	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	7.44	3.69	0.0	0.67	3.73	1.61	1.06	1.77	9.99
Merged-chr9-123853507-1	chr9	123853007	123854007	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_011798, exon 2 of 2)	3' UTR (NM_011798, exon 2 of 2)	-1608.0	NM_001110253	17281.0	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	185.92	211.96	123.02	194.32	157.21	123.78	245.04	258.67	168.0
Merged-chr1-91755295-1	chr1	91754795	91755795	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46166.0	NM_007855	13345.0	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	5.72	5.53	5.55	0.67	0.93	4.82	0.0	1.33	1.25
Merged-chr13-103955675-1	chr13	103955175	103956175	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-35089.0	NM_001005868	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	5.72	2.76	1.85	1.35	3.73	1.61	4.22	2.65	0.0
Merged-chr16-42172723-1	chr16	42172223	42173223	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361282, intron 10 of 10)	intron (NM_001361282, intron 10 of 10)	130746.0	NR_105858	102466172.0		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	1.14	2.3	0.0	1.35	3.27	0.0	1.06	2.65	4.37
Merged-chr11-68656575-1	chr11	68656075	68657075	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35340.0	NM_175260	77579.0	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	57.78	57.6	48.1	103.91	70.44	94.85	72.88	89.32	83.06
Merged-chr17-34971012-1	chr17	34970512	34971512	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010479, exon 1 of 1)	exon (NM_010479, exon 1 of 1)	1144.0	NM_010479	193740.0	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	2.86	1.84	0.0	4.05	2.33	0.0	0.0	0.44	0.0
Merged-chr9-108431856-1	chr9	108431356	108432356	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3374.0	NM_001135198	434438.0	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	1.72	0.92	0.0	6.07	2.33	4.82	2.11	2.65	3.75
Merged-chr6-39264892-1	chr6	39264392	39265392	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58119.0	NM_001033430	338523.0	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.58	7.37	13.87	10.12	7.93	20.09	5.28	5.31	6.25
Merged-chr17-86493283-1	chr17	86492783	86493783	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011104, exon 9 of 15)	exon (NM_011104, exon 9 of 15)	-206105.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	3.43	4.15	3.7	4.05	1.87	4.82	2.11	0.88	3.75
Merged-chr10-12814056-1	chr10	12813556	12814556	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	47679.0	NM_011682	22288.0	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	18.31	7.37	7.4	18.22	16.33	8.04	19.01	12.38	8.12
Merged-chrX-71050810-3	chrX	71050291	71051291	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	535.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	37.18	37.78	23.12	22.94	15.86	27.33	25.35	8.84	15.61
Merged-chr15-102109328-1	chr15	102108828	102109828	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153533, exon 12 of 29)	exon (NM_153533, exon 12 of 29)	6394.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	2.86	3.23	0.0	2.7	2.8	0.0	1.06	1.77	3.12
Merged-chr11-115270711-1	chr11	115270211	115271211	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007997, intron 6 of 11)	intron (NM_007997, intron 6 of 11)	-3468.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	5.72	2.3	3.7	6.07	4.2	1.61	2.11	2.65	1.25
Merged-chr2-32441663-1	chr2	32441163	32442163	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-8794.0	NM_194335	71254.0	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	9.72	5.53	7.4	10.12	8.4	11.25	4.22	7.07	5.0
Merged-chr3-135281144-1	chr3	135280644	135281644	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001172055)	promoter-TSS (NM_001172055)	-77.0	NM_001172055	69772.0	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	2.29	4.61	7.4	6.75	5.6	2.41	5.28	4.42	3.75
Merged-chr4-101146320-2	chr4	101145806	101146806	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183024, intron 11 of 11)	intron (NM_183024, intron 11 of 11)	77268.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	4.0	3.23	5.55	4.05	0.47	1.61	1.06	3.1	8.74
Merged-chr8-122333334-1	chr8	122332834	122333834	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 5 of 9)	intron (NM_009569, intron 5 of 9)	29494.0	NM_133202	170732.0	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.57	2.3	0.92	3.37	0.93	0.0	0.0	0.44	3.12
Merged-chr8-71948861-1	chr8	71948361	71949361	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001164581	234413.0	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	32.61	49.76	46.25	26.99	24.26	37.78	30.63	27.86	27.48
Merged-chr7-131553995-1	chr7	131553495	131554495	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145998)	promoter-TSS (NM_145998)	-67.0	NM_145998	15372.0	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	3.43	1.38	0.0	2.02	1.4	4.82	0.0	0.44	2.5
Merged-chr1-43935395-1	chr1	43934895	43935895	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	1401.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	99.54	169.57	73.07	102.56	124.09	77.97	124.63	170.23	72.45
Merged-chr3-109476684-1	chr3	109476184	109477184	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-97323.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	10.87	10.14	7.4	22.27	23.33	16.88	4.22	4.86	1.87
Merged-chr10-14034217-1	chr10	14033717	14034717	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358783, intron 2 of 12)	intron (NM_001358783, intron 2 of 12)	67838.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.01	3.69	3.7	10.12	5.13	16.88	19.01	7.96	6.25
Merged-chr5-92438342-1	chr5	92437842	92438842	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20C_Mm|LTR|ERVK	-3143.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	12.01	12.44	23.12	10.12	9.8	9.65	8.45	12.82	8.12
Merged-chr13-99317595-1	chr13	99317095	99318095	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27083.0	NM_026873	68927.0	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	5.15	5.53	1.85	10.8	7.46	6.43	6.34	3.1	8.74
Merged-chr17-57462103-1	chr17	57461603	57462603	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355722, intron 18 of 22)	MTC|LTR|ERVL-MaLR	83211.0	NM_001104591	224916.0	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	6.86	7.37	9.25	9.45	6.06	10.45	17.96	12.38	14.99
Merged-chr1-38012752-1	chr1	38012252	38013252	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	L1MD2|LINE|L1	14742.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	122.99	149.75	145.22	166.66	145.55	144.68	173.21	205.61	93.68
Merged-chr6-113078153-1	chr6	113077653	113078653	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_027008)	promoter-TSS (NR_027008)	514.0	NM_028385	72895.0	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	398.72	552.02	415.3	315.09	333.55	346.43	427.76	558.02	263.55
Merged-chr16-35752054-2	chr16	35751554	35752554	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153550, intron 1 of 8)	RLTR13D|LTR|ERVK	17302.0	NM_153550	224132.0	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	8.01	9.22	9.25	6.07	13.06	14.47	17.96	11.05	11.87
Merged-chr4-137764181-1	chr4	137763681	137764681	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007431, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	2294.0	NM_001287172	11647.0	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	4.58	2.3	0.92	4.72	2.8	0.0	14.79	7.96	4.37
Merged-chr17-94835310-1	chr17	94834810	94835810	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045963)	promoter-TSS (NR_045963)	-511.0	NR_045963	100038746.0	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	25.17	17.51	31.45	19.57	23.33	33.76	42.25	31.39	19.98
Merged-chr6-47739894-1	chr6	47739394	47740394	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	4.5SRNA|scRNA|scRNA	4337.0	NR_002841	19799.0		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	6.86	2.3	0.92	4.05	1.87	0.0	30.63	19.9	14.99
Merged-chr13-46979700-1	chr13	46979200	46980200	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	35150.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	8.58	4.61	1.85	5.4	4.67	4.02	8.45	7.07	5.0
Merged-chr2-78037728-1	chr2	78037228	78038228	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13449.0	NR_108098	78158.0	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	9.15	5.07	9.25	8.77	13.53	11.25	7.39	13.71	7.49
Merged-chr14-15205706-1	chr14	15205206	15206206	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-231917.0	NR_152122	77981.0	Mm.138039	NM_001033183		B230110C06Rik	-	RIKEN cDNA B230110C06 gene	ncRNA	0.0	0.46	1.85	1.35	1.4	4.82	4.22	3.1	2.5
Merged-chr9-51102090-1	chr9	51101590	51102590	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177702)	promoter-TSS (NM_177702)	-12.0	NM_177702	235345.0	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	4.0	1.38	3.7	4.05	1.87	2.41	1.06	1.77	3.75
Merged-chrX-129766350-1	chrX	129765850	129766850	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172493, intron 1 of 26)	ORR1D2|LTR|ERVL-MaLR	16608.0	NM_172493	54004.0	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	6.86	5.99	0.0	3.37	1.4	0.8	3.17	0.88	0.0
Merged-chr5-129965896-1	chr5	129965396	129966396	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	RSINE1|SINE|B4	23787.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.57	2.76	5.55	5.4	4.67	4.82	5.28	7.96	3.75
Merged-chrX-23365700-1	chrX	23365200	23366200	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026167)	promoter-TSS (NM_026167)	-618.0	NM_026167	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	8.01	8.75	12.02	10.12	2.33	14.47	11.62	8.84	6.87
Merged-chr6-115803754-1	chr6	115803254	115804254	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_025958, exon 15 of 15)	exon (NM_025958, exon 15 of 15)	4349.0	NR_028546	100217451.0	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	13.16	4.61	10.17	4.72	6.06	5.63	2.11	4.42	5.0
Merged-chr18-46595900-1	chr18	46595400	46596400	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025698, intron 1 of 2)	intron (NM_025698, intron 1 of 2)	1635.0	NM_025698	66676.0	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	11.44	10.6	13.87	5.4	11.2	15.27	21.12	16.8	5.62
Merged-chr18-36511838-1	chr18	36511338	36512338	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010415, intron 3 of 5)	intron (NM_010415, intron 3 of 5)	3967.0	NM_010415	15200.0	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	68.65	35.94	24.97	53.98	18.66	23.31	57.03	43.77	33.72
Merged-chr11-54257203-2	chr11	54256690	54257690	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7291.0	NM_009969	12981.0	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	CSF|Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	2.86	2.76	0.0	2.7	1.87	0.8	0.0	3.98	2.5
Merged-chr1-77824000-1	chr1	77823500	77824500	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-308912.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	2.29	1.84	11.1	2.02	2.8	1.61	4.22	2.21	12.49
Merged-chr14-104028834-1	chr14	104028334	104029334	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1692.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	2.29	2.3	3.7	3.37	2.8	4.82	2.11	0.88	0.0
Merged-chr6-114842050-2	chr6	114841547	114842547	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	79774.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	66.93	67.27	78.62	43.86	33.12	32.15	38.02	46.43	28.1
Merged-chr5-24470821-2	chr5	24470338	24471338	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359881, intron 1 of 15)	intron (NM_001359881, intron 1 of 15)	18661.0	NM_139153	213990.0	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	6.29	5.99	3.7	7.42	1.87	4.02	2.11	2.21	3.75
Merged-chr7-106810256-1	chr7	106809756	106810756	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3796.0	NM_146600	258593.0	Mm.377583	NM_146600	ENSMUSG00000094493	Olfr700	MOR283-4	olfactory receptor 700	protein-coding	4.58	9.68	6.47	4.05	4.67	0.0	3.17	3.1	6.25
Merged-chr12-84276418-1	chr12	84275918	84276918	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8878.0	NM_029880	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	23.45	24.42	8.32	33.74	21.93	21.7	39.08	33.6	33.72
Merged-chr1-128614672-1	chr1	128614172	128615172	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22373.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	28.6	46.54	32.37	42.51	38.72	56.27	12.67	10.61	21.23
Merged-chr9-107278737-1	chr9	107278237	107279237	+	598.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316691, intron 1 of 7)	intron (NM_001316691, intron 1 of 7)	10659.0	NM_001316691	102626.0	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	1.14	0.46	0.0	0.67	2.8	1.61	6.34	1.33	4.37
Merged-chr5-88630194-1	chr5	88629694	88630694	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359208, intron 8 of 13)	intron (NM_001359208, intron 8 of 13)	45386.0	NM_001098476	231413.0	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	125.85	163.58	113.77	105.26	119.43	135.84	128.85	158.3	79.32
Merged-chr6-56894492-1	chr6	56893992	56894992	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026004, intron 1 of 8)	intron (NM_026004, intron 1 of 8)	7394.0	NM_001252374	107569.0	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|P5'N-1|P5N-1|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	8.01	11.52	9.25	9.45	8.4	11.25	8.45	10.17	16.24
Merged-chr11-17006863-3	chr11	17006352	17007352	+	598.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	1866.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	117.84	117.5	68.45	99.86	63.91	74.75	120.41	107.45	84.31
Merged-chr9-41028668-2	chr9	41028156	41029156	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 8 of 13)	intron (NM_176860, intron 8 of 13)	-24028.0	NM_001281954	54698.0	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	5.72	4.15	5.55	5.4	0.47	4.82	1.06	0.88	1.25
Merged-chr19-23057893-1	chr19	23057393	23058393	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83333.0	NM_010638	16601.0	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	7.44	17.97	5.55	26.99	38.72	46.62	40.14	46.87	48.09
Merged-chr9-63757427-1	chr9	63756927	63757927	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	CpG	567.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	68.07	51.15	55.5	77.59	67.64	82.79	91.89	54.39	41.22
Merged-chr5-149015989-1	chr5	149015489	149016489	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9027.0	NR_040429	100503307.0	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	-	predicted gene 15408	ncRNA	2.86	0.46	4.62	5.4	7.46	4.82	7.39	4.42	2.5
Merged-chrX-101329932-1	chrX	101329432	101330432	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30753.0	NM_172932	245537.0	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3|NLG3	neuroligin 3	protein-coding	4.58	2.76	4.62	4.72	3.27	1.61	4.22	0.44	1.25
Merged-chr13-110978916-1	chr13	110978416	110979416	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-75070.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	4.0	1.84	2.77	2.7	1.4	1.61	4.22	6.19	2.5
Merged-chr13-58148619-1	chr13	58148119	58149119	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1670.0	NR_126543	67339.0	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	9.15	4.61	7.4	3.37	1.87	4.82	0.0	1.33	2.5
Merged-chr10-127606680-1	chr10	127606180	127607180	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 4 of 88)	B3|SINE|B2	14468.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	80.66	70.96	69.37	143.04	103.1	151.92	109.84	82.69	71.82
Merged-chr7-58398405-1	chr7	58397905	58398905	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-259797.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	14.3	9.22	9.25	14.84	16.33	6.43	13.73	9.73	12.49
Merged-chr2-22866078-1	chr2	22865578	22866578	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 10 of 13)	intron (NM_019456, intron 10 of 13)	-29444.0	NM_019501	56075.0	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	16.59	6.91	9.25	16.87	2.33	8.04	3.17	5.75	6.25
Merged-chr13-13784228-1	chr13	13783728	13784728	+	598.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010317)	promoter-TSS (NM_010317)	-79.0	NM_010317	14706.0	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.57	0.92	0.0	0.67	0.47	0.0	2.11	2.21	2.5
Merged-chr15-81132815-3	chr15	81132317	81133317	+	597.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	-27770.0	NM_153049	223701.0	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	18.31	15.21	11.1	7.42	4.67	4.82	13.73	7.52	8.74
Merged-chr7-12010716-2	chr7	12010232	12011232	+	597.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30567.0	NM_001166731	628946.0	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	16.59	6.45	14.8	10.12	2.33	8.04	9.51	1.33	21.23
Merged-chr4-135954424-2	chr4	135953890	135954890	+	597.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357530, intron 5 of 9)	B3|SINE|B2	6984.0	NM_001357530	15356.0	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	4.0	2.76	6.47	2.02	3.27	4.82	4.22	2.21	1.87
Merged-chr9-57433917-3	chr9	57433415	57434415	+	597.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152145, intron 3 of 6)	intron (NR_152145, intron 3 of 6)	5821.0	NM_001357913	66812.0	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	13.16	10.6	2.77	17.54	14.93	8.84	17.96	18.57	13.12
Merged-chr1-85109489-1	chr1	85108989	85109989	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_213615, exon 1 of 7)	5' UTR (NM_213615, exon 1 of 7)	364.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	13.73	21.2	9.25	11.47	13.53	11.25	13.73	7.07	9.99
Merged-chr11-20848502-1	chr11	20848002	20849002	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17394.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.58	2.3	3.7	3.37	0.47	4.02	3.17	3.1	5.0
Merged-chr14-33247328-1	chr14	33246828	33247828	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	30505.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	125.28	199.98	153.54	153.16	196.87	155.93	88.72	92.86	87.43
Merged-chr13-64922664-1	chr13	64922164	64923164	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030047, exon 3 of 3)	exon (NM_030047, exon 3 of 3)	5258.0	NM_030047	78124.0	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	2.86	3.23	1.85	2.7	1.87	0.8	0.0	0.0	5.0
Merged-chr6-126910498-1	chr6	126909998	126910998	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207210, intron 2 of 14)	intron (NM_207210, intron 2 of 14)	11341.0	NM_207210	101320.0	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	67.5	72.8	38.85	57.35	56.45	40.99	78.16	68.98	31.85
Merged-chr16-32978661-2	chr16	32978164	32979164	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081255, intron 8 of 20)	intron (NM_001081255, intron 8 of 20)	64564.0	NM_001310672	70144.0	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	39.47	55.75	42.55	46.56	46.65	36.17	59.15	62.35	21.86
Merged-chr1-92911789-1	chr1	92911289	92912289	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181405, intron 1 of 10)	intron (NM_181405, intron 1 of 10)	964.0	NM_181405	108657.0	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	32.04	18.89	29.6	26.99	19.13	24.11	14.79	19.9	19.98
Merged-chr10-80700935-2	chr10	80700434	80701434	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	886.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	21.74	18.89	22.2	22.27	11.66	20.9	21.12	34.05	25.61
Merged-chrX-73655774-2	chrX	73655283	73656283	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001199351)	TTS (NM_001199351)	4071.0	NM_012040	93843.0	Mm.89564	NM_012040	ENSMUSG00000002012	Pnck	Bstk3|CaMKIbeta2|CaMKlb2|Camk1b|Punc|caMKlb1	pregnancy upregulated non-ubiquitously expressed CaM kinase	protein-coding	5.72	7.37	3.7	8.1	6.06	0.0	5.28	0.44	3.75
Merged-chr10-36971474-1	chr10	36970974	36971974	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3070.0	NM_008229	15182.0	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	9.15	11.06	13.87	12.82	11.66	16.08	7.39	7.96	9.37
Merged-chr6-98525469-1	chr6	98524969	98525969	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182715.0	NM_001128092	330390.0	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	5.15	1.84	5.55	1.35	4.2	0.0	1.06	0.0	1.25
Merged-chr9-118488407-2	chr9	118487894	118488894	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10205.0	NM_010136	13813.0	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	2.86	2.3	5.55	2.02	1.87	4.02	4.22	0.88	2.5
Merged-chr17-17973655-2	chr17	17973122	17974122	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3164.0	NM_008042	14294.0	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	4.0	2.76	0.0	4.05	3.73	1.61	2.11	3.98	1.87
Merged-chr2-155011470-1	chr2	155010970	155011970	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2100.0	NM_015770	50518.0	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	6.29	1.38	9.25	6.07	5.13	3.22	1.06	4.86	3.75
Merged-chrX-153360152-1	chrX	153359652	153360652	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357183, intron 2 of 7)	intron (NM_001357183, intron 2 of 7)	539.0	NM_001357183	245671.0	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	1.14	1.38	0.0	4.72	1.4	1.61	2.11	0.44	2.5
Merged-chr9-7254974-1	chr9	7254474	7255474	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CYRA11_Mm|Unknown|Y-chromosome	-17540.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	4.58	5.07	3.7	5.4	8.4	9.65	8.45	3.54	6.25
Merged-chr4-133451768-3	chr4	133451296	133452296	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28337.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	6.86	2.76	0.0	9.45	3.27	2.41	6.34	1.33	0.0
Merged-chr18-38995849-1	chr18	38995349	38996349	+	597.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361073, intron 1 of 21)	intron (NM_001361073, intron 1 of 21)	2704.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.29	4.61	5.55	0.67	1.87	3.22	4.22	2.21	2.5
Merged-chr6-3397423-1	chr6	3396923	3397923	+	597.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010156, intron 1 of 1)	intron (NM_010156, intron 1 of 1)	2148.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	20.59	33.64	36.07	30.36	37.79	30.54	44.36	50.41	19.98
Merged-chr1-37428097-2	chr1	37427593	37428593	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198006, intron 2 of 2)	intron (NM_198006, intron 2 of 2)	2010.0	NM_198006	76178.0	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	112.69	135.93	96.2	82.32	81.64	90.02	116.18	156.09	59.33
Merged-chr10-67711116-2	chr10	67710618	67711618	+	597.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-139159.0	NR_155444	105245193.0	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	13.16	12.9	3.7	18.22	14.46	8.04	13.73	13.71	16.24
Merged-chr8-10834308-2	chr8	10833809	10834809	+	597.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	48145.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	53.77	33.18	15.72	38.46	18.66	13.66	11.62	9.29	9.99
Merged-chr14-58071094-2	chr14	58070596	58071596	+	597.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1590.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.72	4.61	2.77	6.07	0.93	1.61	4.22	4.86	6.25
Merged-chr18-36238690-1	chr18	36238190	36239190	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41530.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	10.3	5.53	4.62	14.17	6.06	11.25	9.51	4.42	7.49
Merged-chr5-41554460-1	chr5	41553960	41554960	+	597.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	153231.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	1.72	3.69	7.4	2.7	3.27	2.41	1.06	1.33	2.5
Merged-chr13-104743032-1	chr13	104742532	104743532	+	597.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360094, intron 10 of 13)	intron (NM_001360094, intron 10 of 13)	73921.0	NM_026072	67285.0	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	8.58	3.69	5.55	2.02	5.13	3.22	0.0	1.33	7.49
Merged-chr5-64070237-1	chr5	64069737	64070737	+	597.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-22702.0	NM_025700	66681.0	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	2.86	4.61	0.0	7.42	0.0	0.0	4.22	6.19	5.62
Merged-chr16-93767705-1	chr16	93767205	93768205	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27196.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	6.29	2.76	3.7	4.72	10.26	4.02	6.34	0.44	5.0
Merged-chr19-18664060-1	chr19	18663560	18664560	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-6720.0	NM_026120	67383.0	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	4.0	4.15	1.85	4.72	6.06	8.84	4.22	6.19	3.75
Merged-chr7-46714726-1	chr7	46714226	46715226	+	597.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011315, intron 2 of 3)	intron (NM_011315, intron 2 of 3)	950.0	NM_011315	20210.0	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	5.15	5.07	0.0	4.05	0.47	3.22	3.17	0.88	0.0
Merged-chr6-39567716-2	chr6	39567216	39568216	+	597.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6160.0	NM_178873	57869.0	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	4.58	0.92	0.0	6.07	4.2	4.02	3.17	0.88	1.25
Merged-chr3-36533482-2	chr3	36532947	36533947	+	597.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12002.0	NR_040411	100503068.0	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	-	predicted gene 11549	ncRNA	19.45	24.42	30.52	21.59	22.86	35.37	26.4	32.28	16.86
Merged-chr13-113865990-2	chr13	113865494	113866494	+	597.06665	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172595, intron 1 of 4)	intron (NM_172595, intron 1 of 4)	71486.0	NM_172595	218639.0	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	4.58	2.76	5.55	7.42	2.8	8.04	3.17	4.42	1.25
Merged-chr14-118088972-1	chr14	118088472	118089472	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER5A|DNA|hAT-Charlie	-36726.0	NM_010024	13190.0	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	57.21	65.89	43.47	60.05	57.85	56.27	65.48	57.92	37.47
Merged-chr11-69757413-2	chr11	69756876	69757876	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291068, intron 1 of 28)	intron (NM_001291068, intron 1 of 28)	1257.0	NM_001291068	20020.0	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	22.31	31.33	11.1	29.69	27.52	37.78	45.42	55.71	31.23
Merged-chr2-61712810-1	chr2	61712310	61713310	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021526, intron 1 of 11)	ORR1B2|LTR|ERVL-MaLR	1116.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	21.74	24.42	12.95	27.66	13.53	14.47	27.46	16.8	6.25
Merged-chr13-70043007-1	chr13	70042507	70043507	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-14659.0	NR_045965	74280.0	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	1.14	1.38	0.92	0.0	2.8	3.22	8.45	6.63	6.25
Merged-chr19-5015174-1	chr19	5014674	5015674	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-8832.0	NM_007854	13340.0	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	3.43	3.23	0.0	3.37	1.87	1.61	7.39	1.33	1.25
Merged-chr17-37203059-2	chr17	37202543	37203543	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-5077.0	NM_001011518	258219.0	Mm.377382	NM_001011518	ENSMUSG00000043827	Olfr94	MOR256-32P	olfactory receptor 94	protein-coding	13.16	15.21	22.2	6.07	9.33	16.88	7.39	11.05	13.74
Merged-chr3-69238690-1	chr3	69238190	69239190	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16271.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	5.15	1.84	3.7	3.37	2.33	2.41	1.06	3.1	6.25
Merged-chr1-105984292-1	chr1	105983792	105984792	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151625, intron 2 of 2)	intron (NR_151625, intron 2 of 2)	5990.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	28.6	20.27	16.65	20.92	14.93	8.04	40.14	22.55	16.24
Merged-chr6-86209452-1	chr6	86208952	86209952	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031199, intron 1 of 5)	intron (NM_031199, intron 1 of 5)	14225.0	NM_031199	21802.0	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	12.59	5.07	0.0	7.42	3.27	5.63	2.11	4.42	6.25
Merged-chrX-13618748-1	chrX	13618248	13619248	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284503, intron 7 of 26)	intron (NM_001284503, intron 7 of 26)	-14021.0	NM_011823	23890.0	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	8.01	7.37	0.0	8.77	6.06	7.23	3.17	2.21	3.75
Merged-chr6-35587112-1	chr6	35586612	35587612	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-47224.0	NM_008098	14489.0	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	4.58	4.61	3.7	6.75	4.2	4.02	4.22	2.65	7.49
Merged-chr11-60209391-1	chr11	60208891	60209891	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358315, intron 1 of 18)	intron (NM_001358315, intron 1 of 18)	1080.0	NM_001358314	20787.0	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP1|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	37.18	45.16	14.8	41.16	24.72	12.86	39.08	29.18	5.0
Merged-chr11-22630107-1	chr11	22629607	22630607	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	117824.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	2.86	5.99	0.92	12.82	10.26	12.86	12.67	6.63	11.24
Merged-chr17-35382868-1	chr17	35382368	35383368	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001143689, exon 4 of 6)	exon (NM_001143689, exon 4 of 6)	3251.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	2.86	0.46	1.85	3.37	0.0	3.22	2.11	2.65	5.0
Merged-chr2-52905325-1	chr2	52904825	52905825	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MLT1A|LTR|ERVL-MaLR	47457.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.29	5.99	3.7	6.75	5.6	11.25	2.11	3.54	14.99
Merged-chr4-129774926-1	chr4	129774426	129775426	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32623.0	NR_045036	20218.0	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	1.14	2.3	5.55	2.02	2.8	0.8	11.62	3.98	1.25
Merged-chr18-54970055-1	chr18	54969555	54970555	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	20125.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	42.9	30.87	18.5	29.69	22.39	17.68	11.62	7.96	15.61
Merged-chr13-60671286-1	chr13	60670786	60671786	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	69075.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	293.46	271.86	165.57	275.96	244.92	189.69	211.24	255.57	150.51
Merged-chr11-54182006-2	chr11	54181518	54182518	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045506, intron 2 of 2)	MER3|DNA|hAT-Charlie	31270.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	6.29	6.91	2.77	5.4	5.13	3.22	4.22	3.1	7.49
Merged-chr6-115991933-1	chr6	115991433	115992433	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026376, intron 1 of 35)	intron (NM_026376, intron 1 of 35)	3072.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	8.58	6.91	12.95	4.72	10.73	9.65	14.79	7.52	3.75
Merged-chr2-52676256-1	chr2	52675756	52676756	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001285426)	promoter-TSS (NM_001285426)	-113.0	NM_001285426	12298.0	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	2.29	2.76	0.0	2.7	0.93	6.43	3.17	0.88	2.5
Merged-chr12-86048056-1	chr12	86047556	86048556	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081423, intron 33 of 33)	MER112|DNA|hAT-Charlie	30985.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	49.2	39.63	21.27	74.89	69.98	64.3	54.92	34.49	33.72
Merged-chr9-89210582-2	chr9	89210075	89211075	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026829)	promoter-TSS (NM_026829)	-615.0	NM_026829	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	24.03	21.2	15.72	22.94	10.26	15.27	30.63	35.82	28.1
Merged-chr6-114577541-1	chr6	114577041	114578041	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	-65556.0	NM_028835	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.0	0.92	0.0	0.0	0.93	0.0	0.0	0.0	3.75
Merged-chr6-120821519-1	chr6	120821019	120822019	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007510, intron 1 of 8)	B1_Mur3|SINE|Alu	1179.0	NM_007510	11973.0	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|Vma4|p31	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	92.67	116.58	51.8	100.53	124.56	103.69	160.54	156.09	78.69
Merged-chr15-64079211-1	chr15	64078711	64079711	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-18763.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	18.88	16.59	25.9	16.19	12.13	11.25	29.57	13.71	18.74
Merged-chr11-99963090-1	chr11	99962590	99963590	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14615.0	NM_001085527	435286.0	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	7.44	6.91	0.0	4.05	6.53	4.82	8.45	7.07	6.25
Merged-chr14-87417764-1	chr14	87417264	87418264	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253755, intron 1 of 11)	intron (NM_001253755, intron 1 of 11)	1181.0	NM_001253755	219249.0	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	60.07	57.14	37.92	63.42	72.78	88.42	66.54	43.77	33.1
Merged-chr9-123683901-1	chr9	123683401	123684401	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-5069.0	NM_139142	102680.0	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	4.58	2.3	1.85	4.72	3.27	4.82	2.11	0.88	2.5
Merged-chr5-38091200-1	chr5	38090700	38091700	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	51970.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.86	0.46	6.47	2.7	3.73	7.23	2.11	1.77	1.25
Merged-chr19-17219757-1	chr19	17219257	17220257	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181348, intron 19 of 19)	MLT2B5|LTR|ERVL	119748.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	17.73	12.9	24.05	20.24	15.39	8.84	12.67	9.73	2.5
Merged-chr10-19851566-1	chr10	19851066	19852066	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029529)	promoter-TSS (NM_029529)	-107.0	NM_029529	76157.0	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	9.15	1.84	0.0	4.05	2.8	3.22	5.28	0.44	3.12
Merged-chr9-99469806-2	chr9	99469290	99470290	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028123)	promoter-TSS (NR_028123)	-631.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	5.72	2.3	3.7	8.1	2.8	1.61	10.56	8.84	1.25
Merged-chr16-4559143-1	chr16	4558643	4559643	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_031182, intron 1 of 6)	CpG	577.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	41.19	49.3	58.27	62.75	64.84	103.69	57.03	79.15	39.35
Merged-chr4-132930884-1	chr4	132930384	132931384	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8333.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	12.59	3.69	0.0	7.42	0.0	6.43	3.17	0.44	3.75
Merged-chr19-61226563-1	chr19	61226063	61227063	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009970, exon 5 of 12)	exon (NM_009970, exon 5 of 12)	1855.0	NM_009970	12982.0	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	164.75	98.15	79.55	143.71	105.9	101.28	145.75	124.69	83.69
Merged-chr6-5255074-1	chr6	5254574	5255574	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173006, intron 1 of 8)	intron (NM_173006, intron 1 of 8)	1159.0	NM_173006	269823.0	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	6.86	8.29	3.7	10.8	6.06	0.0	4.22	3.54	7.49
Merged-chr16-65205060-1	chr16	65204560	65205560	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99276.0	NM_008310	15557.0	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	2.86	3.23	5.55	7.42	6.53	8.04	1.06	0.88	6.25
Merged-chr9-37545051-1	chr9	37544551	37545551	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_020518)	TTS (NM_020518)	5796.0	NM_020518	57276.0	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	1.72	2.76	5.55	4.05	4.2	7.23	3.17	6.19	0.0
Merged-chr11-3288720-1	chr11	3288220	3289220	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045109)	promoter-TSS (NR_045109)	-411.0	NR_045108	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	8.01	2.3	7.4	6.75	1.87	5.63	3.17	2.65	8.74
Merged-chr18-64517278-1	chr18	64516778	64517778	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027350)	promoter-TSS (NM_027350)	-721.0	NM_001142950	70223.0	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	56.63	79.72	25.9	85.69	96.1	65.11	61.26	102.14	42.47
Merged-chr16-8412467-1	chr16	8411967	8412967	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029070, intron 2 of 3)	intron (NM_029070, intron 2 of 3)	12669.0	NM_029070	74720.0	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.57	2.3	1.85	0.0	2.33	2.41	2.11	3.98	1.25
Merged-chr5-36742118-1	chr5	36741618	36742618	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6561.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	13.73	8.75	11.1	12.14	10.26	4.82	19.01	9.29	11.87
Merged-chr10-126498889-1	chr10	126498389	126499389	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	211502.0	NR_105841	102465224.0		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	1.14	4.61	1.85	2.7	4.67	4.82	3.17	4.86	2.5
Merged-chr2-102795205-1	chr2	102794705	102795705	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48445.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	4.0	1.84	7.4	5.4	8.86	8.04	1.06	3.98	4.37
Merged-chr16-31192548-1	chr16	31192048	31193048	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	ORR1E-int|LTR|ERVL-MaLR	8690.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	29.75	36.4	46.25	43.86	32.19	50.64	41.19	32.72	26.85
Merged-chrX-77798610-1	chrX	77798110	77799110	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2650.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	5.72	7.83	5.55	7.42	7.46	16.08	6.34	6.19	11.87
Merged-chr7-102076882-1	chr7	102076382	102077382	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011644, intron 3 of 21)	B2_Mm2|SINE|B2	5663.0	NM_011644	102443351.0	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	2.86	2.3	0.0	3.37	2.8	0.0	4.22	3.1	1.25
Merged-chr15-98580321-1	chr15	98579821	98580821	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001201322, intron 1 of 3)	intron (NM_001201322, intron 1 of 3)	9317.0	NM_001201322	73863.0	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	2.29	1.38	0.0	2.02	1.4	0.8	5.28	0.88	3.12
Merged-chr9-67839540-1	chr9	67839040	67840040	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177184)	promoter-TSS (NM_177184)	-856.0	NM_177184	320528.0	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	23.45	40.55	35.15	26.31	24.26	40.99	14.79	10.61	7.49
Merged-chr19-3451423-1	chr19	3450923	3451923	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36879.0	NM_010253	14419.0	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.57	5.07	6.47	2.7	3.73	1.61	5.28	0.88	1.25
Merged-chr3-104633220-1	chr3	104632720	104633720	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5444.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	6.29	6.91	3.7	4.05	7.0	8.04	5.28	1.77	2.5
Merged-chr4-3781333-1	chr4	3780833	3781833	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 11 of 12)	ID2|SINE|ID	54322.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	9.15	4.15	12.02	9.45	3.73	8.84	5.28	3.54	6.25
Merged-chr13-113471023-1	chr13	113470523	113471523	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045501, intron 3 of 6)	intron (NR_045501, intron 3 of 6)	31821.0	NR_045501	70917.0	Mm.491036	NR_045501	ENSMUSG00000114790	4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	5.15	9.22	5.55	20.24	20.53	16.88	11.62	11.94	21.86
Merged-chr3-88149613-1	chr3	88149113	88150113	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	7241.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	44.62	53.91	39.77	27.66	43.85	38.58	50.7	51.73	39.35
Merged-chr3-88610775-1	chr3	88610275	88611275	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5432.0	NM_001198911	16800.0	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	12.01	15.21	12.02	12.14	15.39	12.06	22.18	15.48	15.61
Merged-chr4-115903046-1	chr4	115902546	115903546	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12380.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	2.29	0.92	1.85	1.35	0.93	4.82	1.06	3.54	3.75
Merged-chr18-60848332-1	chr18	60847832	60848832	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011552, intron 1 of 24)	intron (NM_011552, intron 1 of 24)	632.0	NM_011552	21453.0	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	69.22	60.36	51.8	73.54	85.84	50.64	77.1	71.19	38.1
Merged-chr13-58456555-1	chr13	58456055	58457055	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-53212.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	33.18	25.34	16.65	22.94	23.79	28.94	29.57	32.72	21.23
Merged-chr17-27569991-1	chr17	27569491	27570491	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4264.0	NM_001002895	106672.0	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251|Smim29	expressed sequence AI413582	protein-coding	25.17	29.03	32.37	24.96	26.12	41.8	23.24	21.67	26.23
Merged-chr12-52618856-1	chr12	52618356	52619356	+	597.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(A)n|Simple_repeat|Simple_repeat	-16534.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.57	3.23	1.85	1.35	3.27	6.43	4.22	2.65	5.0
Merged-chr12-81755783-1	chr12	81755283	81756283	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25387.0	NM_177395	338372.0	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	6.29	10.6	12.02	4.72	6.06	3.22	5.28	4.42	11.87
Merged-chr1-80659994-1	chr1	80659494	80660494	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	5358.0	NM_001285927	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	72.65	104.14	77.7	64.1	71.84	81.99	87.66	94.18	70.57
Merged-chr10-57584151-1	chr10	57583651	57584651	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-47830.0	NM_008863	18768.0	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	4.0	6.45	3.7	5.4	6.06	0.0	4.22	1.77	1.87
Merged-chr9-73091858-1	chr9	73091358	73092358	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301230, intron 6 of 6)	intron (NM_001301230, intron 6 of 6)	-10540.0	NM_025890	66991.0	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	4.58	8.29	0.0	4.72	1.4	0.8	1.06	5.75	0.0
Merged-chr13-108329920-1	chr13	108329420	108330420	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178683, intron 2 of 10)	intron (NM_178683, intron 2 of 10)	13583.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	3.43	2.76	1.85	2.02	5.6	4.82	3.17	1.77	0.0
Merged-chr2-173361809-1	chr2	173361309	173362309	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-85276.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	5.15	1.84	7.4	1.35	0.0	3.22	2.11	1.33	3.75
Merged-chr17-48818018-1	chr17	48817518	48818518	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16B2|LTR|ERVL	-114564.0	NM_027452	70530.0	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.0	0.0	1.85	0.67	1.87	1.61	6.34	0.88	1.25
Merged-chr15-34237532-2	chr15	34237032	34238032	+	597.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033521)	promoter-TSS (NM_033521)	-494.0	NM_033521	114128.0	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	20.02	20.27	16.65	18.89	27.99	18.49	17.96	15.03	5.0
Merged-chr19-55935971-1	chr19	55935471	55936471	+	597.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40650.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.58	2.3	0.92	2.7	1.4	4.82	7.39	1.33	2.5
Merged-chr4-155481982-2	chr4	155481489	155482489	+	596.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9372.0	NM_001160017	14688.0	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	25.74	19.35	27.75	25.64	17.73	34.56	23.24	18.13	24.36
Merged-chr6-85141225-2	chr6	85140726	85141726	+	596.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3462.0	NM_011467	20751.0	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|Gm10328	sepiapterin reductase	protein-coding	3.43	0.92	1.85	3.37	0.0	1.61	5.28	0.0	3.75
Merged-chr7-99132806-2	chr7	99132291	99133291	+	596.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	8353.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	84.09	94.92	86.02	76.24	62.51	113.33	95.06	115.41	89.93
Merged-chr1-85897723-2	chr1	85897187	85898187	+	596.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	3177.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	18.88	13.82	13.87	24.96	10.26	16.88	25.35	14.15	16.24
Merged-chr1-85960425-2	chr1	85959949	85960949	+	596.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033290, intron 1 of 1)	MIRc|SINE|MIR	606.0	NM_001033290	227326.0	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	8.01	3.69	1.85	5.4	4.67	2.41	9.51	5.31	6.87
Merged-chr15-95851132-1	chr15	95850632	95851632	+	596.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001253813, intron 2 of 20)	MTB|LTR|ERVL-MaLR	-21060.0	NR_155276	102634389.0	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	61.78	96.3	76.77	61.4	76.51	67.52	98.23	107.89	59.95
Merged-chr2-122243962-2	chr2	122243419	122244419	+	596.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146126, intron 1 of 8)	ID_B1|SINE|B4	9080.0	NM_146126	20322.0	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	5.15	4.15	1.85	2.7	4.2	4.82	2.11	2.21	1.25
Merged-chr10-63428958-1	chr10	63428458	63429458	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1140.0	NM_177612	216033.0	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	12.01	10.6	12.02	12.82	11.66	12.86	15.84	8.84	2.5
Merged-chr11-94870491-1	chr11	94869991	94870991	+	596.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20898.0	NM_001205037	432591.0	Mm.370372	NM_001205037		Gm11544	-	predicted gene 11544	protein-coding	0.57	0.46	0.0	2.02	0.47	0.0	1.06	0.44	3.12
Merged-chr11-3663617-2	chr11	3663106	3664106	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159288, intron 4 of 26)	MERVL_2A-int|LTR|ERVL	4906.0	NM_198162	74522.0	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	22.88	27.19	34.22	30.36	23.33	58.68	39.08	24.76	36.85
Merged-chr9-115862994-1	chr9	115862494	115863494	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-46461.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	1.72	1.84	5.55	5.4	2.8	3.22	4.22	0.0	2.5
Merged-chr2-71104877-2	chr2	71104375	71105375	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13179.0	NM_028593	73649.0	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	2.86	2.3	3.7	9.45	7.0	4.02	5.28	5.31	0.0
Merged-chr10-24809030-1	chr10	24808530	24809530	+	596.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134005, intron 7 of 24)	RSINE1|SINE|B4	27165.0	NM_134005	209558.0	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	4.0	0.46	3.7	4.05	4.67	4.02	2.11	0.88	3.75
Merged-chr2-145890569-1	chr2	145890069	145891069	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12672.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	26.31	31.79	24.05	33.06	29.86	35.37	10.56	17.69	11.87
Merged-chr3-53041055-1	chr3	53040555	53041555	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175386)	promoter-TSS (NM_175386)	-492.0	NM_175386	108927.0	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	2.29	2.3	0.0	1.35	3.27	3.22	0.0	0.44	3.75
Merged-chr2-75846457-2	chr2	75845949	75846949	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172666, intron 1 of 19)	B1_Mus1|SINE|Alu	14272.0	NM_172666	228061.0	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	12.59	10.6	10.17	6.75	6.53	4.82	13.73	7.07	5.62
Merged-chr16-21211068-2	chr16	21210569	21211569	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	6274.0	NM_010143	13845.0	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	2.86	1.84	7.4	5.4	1.87	1.61	5.28	1.33	6.25
Merged-chr12-32828505-1	chr12	32828005	32829005	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021524, intron 1 of 10)	intron (NM_021524, intron 1 of 10)	4389.0	NR_045032	100504486.0	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	34.9	42.85	42.55	30.36	35.45	31.35	21.12	19.9	15.61
Merged-chr9-72957532-1	chr9	72957032	72958032	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1253.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	15.45	10.14	14.8	10.8	11.2	13.66	8.45	16.8	16.86
Merged-chr7-75684738-1	chr7	75684238	75685238	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 12 of 36)	intron (NM_029332, intron 12 of 36)	-163600.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	18.31	19.81	19.42	17.54	14.0	17.68	11.62	7.96	13.74
Merged-chr16-90744624-1	chr16	90744124	90745124	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029844, intron 1 of 2)	(CAGAG)n|Simple_repeat|Simple_repeat	6300.0	NM_029844	77037.0	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|C21ORF61|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	36.04	23.96	39.77	22.27	24.72	22.51	13.73	19.01	36.85
Merged-chr17-50110742-1	chr17	50110242	50111242	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	79755.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	10.87	4.15	3.7	7.42	7.93	20.09	1.06	4.86	5.62
Merged-chr18-80280606-2	chr18	80280099	80281099	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025861, intron 4 of 5)	intron (NM_025861, intron 4 of 5)	24293.0	NM_025861	66943.0	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	4.58	2.76	6.47	0.0	4.2	4.82	2.11	0.44	3.75
Merged-chr12-111469671-3	chr12	111469177	111470177	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16146.0	NM_001033248	212539.0	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	1.14	2.3	1.85	4.05	1.4	4.02	2.11	2.65	2.5
Merged-chr18-84536056-1	chr18	84535556	84536556	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033341, intron 3 of 8)	intron (NM_001033341, intron 3 of 8)	53448.0	NM_001033341	240476.0	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	6.86	2.76	0.0	5.4	3.27	0.0	2.11	1.33	0.62
Merged-chr2-28197720-2	chr2	28197218	28198218	+	596.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038613, intron 1 of 5)	intron (NM_001038613, intron 1 of 5)	4625.0	NM_001038614	56177.0	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	6.86	6.45	12.02	3.37	1.4	4.82	5.28	3.54	4.37
Merged-chr7-132690922-1	chr7	132690422	132691422	+	596.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 6 of 6)	B4A|SINE|B4	80279.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	4.58	3.69	1.85	4.05	5.13	8.04	2.11	1.33	5.62
Merged-chr6-121184450-1	chr6	121183950	121184950	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001304773, exon 1 of 5)	exon (NM_001304773, exon 1 of 5)	783.0	NM_001304773	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	18.31	19.81	18.5	25.64	28.92	22.51	32.74	33.6	13.74
Merged-chr9-78586942-1	chr9	78586442	78587442	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172773, intron 1 of 10)	intron (NM_172773, intron 1 of 10)	1103.0	NM_172773	235504.0	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	15.45	13.36	6.47	24.29	13.06	4.82	25.35	21.67	8.74
Merged-chr3-89428089-1	chr3	89427589	89428589	+	596.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011368, intron 12 of 12)	intron (NM_011368, intron 12 of 12)	-2125.0	NM_001293766	68911.0	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	6.86	5.53	7.4	10.12	6.06	3.22	6.34	4.42	8.12
Merged-chr13-64154850-2	chr13	64154334	64155334	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1635.0	NM_175494	238673.0	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	15.45	13.36	7.4	16.19	14.93	7.23	13.73	11.05	7.49
Merged-chr8-126705609-2	chr8	126705098	126706098	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-112162.0	NM_001164598	270110.0	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.57	1.84	0.0	5.4	0.93	1.61	5.28	3.98	0.0
Merged-chr14-79508036-1	chr14	79507536	79508536	+	596.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007920, intron 1 of 8)	intron (NM_007920, intron 1 of 8)	-7638.0	NM_001286412	13709.0	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	27.46	29.03	33.3	54.65	23.33	31.35	41.19	51.73	20.61
Merged-chr9-21153713-2	chr9	21153222	21154222	+	596.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3816.0	NM_016742	12539.0	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	10.3	8.29	9.25	8.1	9.33	5.63	11.62	12.38	5.62
Merged-chr16-91363654-1	chr16	91363154	91364154	+	596.200012	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9129.0	NM_010509	15976.0	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	16.59	5.53	7.4	14.84	12.13	8.04	25.35	6.63	5.62
Merged-chr18-36240089-3	chr18	36239574	36240574	+	596.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	-41088.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	20.02	16.59	24.97	20.92	16.79	37.78	26.4	23.43	13.12
Merged-chr4-154899877-1	chr4	154899377	154900377	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025582)	promoter-TSS (NM_025582)	-834.0	NM_025582	66469.0	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	24.03	26.73	23.12	34.41	46.18	43.4	35.91	39.8	27.48
Merged-chr2-109918780-1	chr2	109918280	109919280	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172671, intron 1 of 17)	intron (NM_172671, intron 1 of 17)	1133.0	NM_172671	107515.0	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	10.87	0.92	13.87	8.77	4.2	8.04	3.17	2.21	4.37
Merged-chr8-40894104-1	chr8	40893604	40894604	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007514, intron 1 of 11)	intron (NM_007514, intron 1 of 11)	31737.0	NM_001044740	11988.0	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	2.29	2.76	7.4	1.35	1.87	0.0	5.28	1.77	5.0
Merged-chr11-96407916-1	chr11	96407416	96408416	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42158.0	NM_008266	15407.0	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	9.15	7.37	0.0	22.27	27.52	21.7	11.62	6.63	13.12
Merged-chr19-17342493-2	chr19	17341994	17342994	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010265, intron 1 of 2)	MIRb|SINE|MIR	-2989.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	13.16	11.52	5.55	12.82	7.0	6.43	21.12	10.17	21.23
Merged-chr6-108505563-1	chr6	108505063	108506063	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 53 of 61)	ID4|SINE|ID	15820.0	NR_106121	102465766.0		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	61.21	61.75	25.9	91.76	71.84	77.16	59.15	70.3	23.11
Merged-chr6-142538702-1	chr6	142538202	142539202	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30745.0	NM_001316322	16832.0	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	6.29	1.84	0.0	2.02	2.8	1.61	4.22	3.54	2.5
Merged-chr4-62500146-1	chr4	62499646	62500646	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024257, intron 1 of 1)	intron (NM_024257, intron 1 of 1)	2054.0	NM_024257	72748.0	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	15.45	7.83	2.77	14.84	4.67	5.63	3.17	6.63	1.25
Merged-chr4-10998899-1	chr4	10998399	10999399	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175175, intron 1 of 1)	intron (NM_175175, intron 1 of 1)	8720.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	6.29	13.82	27.75	6.75	10.26	8.04	16.9	23.88	13.74
Merged-chr3-8762419-1	chr3	8761919	8762919	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-95381.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	4.58	3.69	10.17	3.37	3.73	6.43	1.06	3.98	8.12
Merged-chr7-19517902-1	chr7	19517402	19518402	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027116)	promoter-TSS (NM_027116)	-829.0	NM_027116	69547.0	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	6.29	0.92	6.47	5.4	0.47	6.43	5.28	2.21	2.5
Merged-chrX-23321164-2	chrX	23320659	23321659	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026167, intron 2 of 8)	intron (NM_026167, intron 2 of 8)	-35600.0	NM_001290476	67455.0	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.57	5.99	6.47	1.35	2.33	1.61	5.28	6.63	0.0
Merged-chr10-37222868-1	chr10	37222368	37223368	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-83942.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	16.59	8.29	6.47	18.89	9.8	8.84	12.67	17.24	8.74
Merged-chr2-120101252-1	chr2	120100752	120101752	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133838, intron 4 of 5)	intron (NM_133838, intron 4 of 5)	53323.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	44.05	63.59	59.2	62.75	50.85	73.14	81.33	80.47	53.71
Merged-chr17-63403391-1	chr17	63402891	63403891	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	-90418.0	NR_130176	414079.0	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	10.87	13.82	14.8	16.19	6.06	9.65	11.62	9.29	8.12
Merged-chrX-36561854-1	chrX	36561354	36562354	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-36339.0	NM_016783	53328.0	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema|mPR	progesterone receptor membrane component 1	protein-coding	1.72	1.84	1.85	1.35	0.47	0.0	3.17	3.98	1.25
Merged-chr2-36244014-1	chr2	36243514	36244514	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008969, intron 8 of 10)	intron (NM_008969, intron 8 of 10)	13588.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	38.33	55.75	49.95	29.01	48.05	61.09	83.44	55.27	52.46
Merged-chr2-30677144-2	chr2	30676642	30677642	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136917, intron 1 of 3)	CpG	869.0	NR_136917	665635.0	Mm.450149	NR_136917		Gm14486	-	predicted gene 14486	ncRNA	5.72	4.61	2.77	12.14	6.06	6.43	5.28	3.54	3.75
Merged-chr2-147014416-1	chr2	147013916	147014916	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356402, intron 1 of 28)	B1_Mur1|SINE|Alu	1417.0	NM_001356402	24128.0	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	43.48	62.67	48.1	42.51	32.66	40.19	50.7	65.0	30.6
Merged-chr19-45333177-1	chr19	45332677	45333677	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-30557.0	NM_001360122	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	6.86	1.84	1.85	2.7	2.33	1.61	5.28	2.65	5.0
Merged-chr2-150451369-1	chr2	150450869	150451869	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310645, intron 1 of 3)	intron (NM_001310645, intron 1 of 3)	132.0	NM_001310645	668923.0	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	ZIPO-II	zinc finger protein 442	protein-coding	6.86	4.61	5.55	10.8	4.67	8.04	4.22	8.4	6.87
Merged-chr19-55742621-2	chr19	55742121	55743121	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 1 of 15)	CpG	811.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	141.87	174.64	184.07	102.56	132.95	162.37	174.27	149.89	138.02
Merged-chr7-145001698-1	chr7	145001198	145002198	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61773.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	7.44	2.76	7.4	4.05	1.87	0.0	1.06	1.33	0.0
Merged-chrX-53693401-1	chrX	53692901	53693901	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6874.0	NR_102724	100504039.0		NR_102724		LOC100504039	-	uncharacterized LOC100504039	ncRNA	1.72	3.23	1.85	6.07	2.8	4.82	4.22	0.88	1.25
Merged-chr11-70438111-1	chr11	70437611	70438611	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_106064)	promoter-TSS (NR_106064)	-144.0	NR_106064	102465670.0		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	53.2	41.93	63.82	49.93	37.79	75.56	60.2	54.39	41.84
Merged-chr16-91736447-1	chr16	91735947	91736947	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	7076.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	81.8	84.78	91.57	88.39	104.03	82.79	68.65	85.34	43.72
Merged-chr4-120858847-1	chr4	120858347	120859347	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_182929, intron 1 of 7)	intron (NM_182929, intron 1 of 7)	4048.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	28.6	29.03	39.77	22.27	18.19	24.11	16.9	19.9	20.61
Merged-chr11-62006539-2	chr11	62006030	62007030	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	49767.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	127.57	158.51	74.0	122.12	182.4	158.35	80.27	105.24	59.33
Merged-chr15-4731056-1	chr15	4730556	4731556	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016704, intron 1 of 15)	Lx7|LINE|L1	3846.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	18.88	34.1	12.95	32.39	27.06	49.03	39.08	43.77	32.48
Merged-chr13-23534305-1	chr13	23533805	23534805	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_175661)	TTS (NM_175661)	394.0	NM_175661	319173.0	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	16.02	30.87	20.35	20.24	20.53	12.06	31.69	48.64	23.11
Merged-chr3-9782603-1	chr3	9782103	9783103	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 1 of 7)	intron (NM_053182, intron 1 of 7)	51076.0	NM_053182	94212.0	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	4.0	6.45	3.7	8.77	7.0	3.22	3.17	0.0	0.0
Merged-chr17-10744045-1	chr17	10743545	10744545	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	96146.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	5.15	6.45	1.85	10.8	16.33	17.68	8.45	8.84	6.25
Merged-chr2-129393742-1	chr2	129393242	129394242	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22603.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.44	4.61	7.4	6.07	1.4	1.61	10.56	3.98	3.75
Merged-chr1-133039644-1	chr1	133039144	133040144	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6368.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	5.72	1.84	0.92	5.4	0.93	1.61	4.22	3.98	0.0
Merged-chr5-110330703-2	chr5	110330199	110331199	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011132, intron 41 of 48)	intron (NM_011132, intron 41 of 48)	12336.0	NM_153400	231602.0	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	1.14	5.07	2.77	2.02	1.4	8.04	0.0	1.77	0.0
Merged-chr4-122997250-1	chr4	122996750	122997750	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	1319.0	NM_008506	16918.0	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	6.86	2.76	1.85	5.4	2.33	0.0	5.28	0.0	0.0
Merged-chr2-57208675-1	chr2	57208175	57209175	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	26844.0	NR_040633	75279.0	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	2.29	5.99	5.55	0.67	2.33	1.61	1.06	0.44	2.5
Merged-chr3-103112430-1	chr3	103111930	103112930	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-15126.0	NM_177857	329727.0	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	5.15	1.84	1.85	4.05	4.67	3.22	6.34	1.33	2.5
Merged-chr6-137826818-1	chr6	137826318	137827318	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172733, intron 6 of 8)	intron (NM_172733, intron 6 of 8)	72241.0	NM_172733	232449.0	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	10.87	14.28	23.12	11.47	8.4	28.94	15.84	8.84	18.11
Merged-chr3-96052165-1	chr3	96051665	96052665	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 3 of 14)	intron (NM_013841, intron 3 of 14)	6290.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	7.44	4.15	3.7	4.72	2.33	9.65	2.11	1.33	0.62
Merged-chr10-127945549-1	chr10	127945049	127946049	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47014.0	NM_027301	70061.0	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	4.0	3.23	3.7	1.35	2.33	4.02	2.11	1.33	8.74
Merged-chr16-57217669-1	chr16	57217169	57218169	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026254, intron 2 of 17)	intron (NM_026254, intron 2 of 17)	13797.0	NM_026254	67581.0	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	23.45	18.89	29.6	20.92	14.93	18.49	30.63	24.32	19.98
Merged-chrX-74273899-1	chrX	74273399	74274399	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_052835)	TTS (NM_052835)	206.0	NR_106059	102466804.0		NR_106059	ENSMUSG00000099226	Mir7091	Gm27381|mmu-mir-7091	microRNA 7091	ncRNA	6.29	17.05	20.35	12.14	12.6	16.88	10.56	17.24	11.24
Merged-chr5-115194373-1	chr5	115193873	115194873	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310712)	promoter-TSS (NM_001310712)	8.0	NM_001310712	29867.0	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	1.72	0.0	0.0	4.05	0.93	1.61	2.11	1.77	1.25
Merged-chr2-128726595-1	chr2	128726095	128727095	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	27680.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	52.63	39.63	37.92	39.13	14.93	29.74	41.19	39.8	34.97
Merged-chr7-81493517-1	chr7	81493017	81494017	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001193274)	TTS (NM_001193274)	408.0	NM_021492	11775.0	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	3.43	1.38	0.0	4.05	2.8	1.61	0.0	0.88	1.25
Merged-chrX-36103790-1	chrX	36103290	36104290	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8318.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	16.02	9.22	14.8	6.07	8.4	12.06	9.51	9.73	12.49
Merged-chr12-83502431-1	chr12	83501931	83502931	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14695.0	NM_058212	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	1.14	2.76	1.85	5.4	3.27	3.22	3.17	1.33	2.5
Merged-chr3-116414662-1	chr3	116414162	116415162	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001173553, intron 2 of 13)	intron (NM_001173553, intron 2 of 13)	9370.0	NM_001080818	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	9.72	3.23	3.7	6.75	2.33	0.0	5.28	5.75	2.5
Merged-chr6-120358847-1	chr6	120358347	120359347	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045558, intron 1 of 9)	intron (NR_045558, intron 1 of 9)	-1378.0	NM_026028	67200.0	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	5.72	5.99	7.4	7.42	3.73	7.23	7.39	3.1	7.49
Merged-chrX-96236226-1	chrX	96235726	96236726	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3700.0	NR_030718	100038363.0	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	Gm14924|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	7.44	5.53	0.0	4.05	6.06	0.0	1.06	3.54	9.37
Merged-chr2-167783630-1	chr2	167783130	167784130	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	92453.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.43	11.06	9.25	8.77	3.27	7.23	9.51	11.5	5.0
Merged-chr3-116211842-1	chr3	116211342	116212342	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J2|LTR|ERVL-MaLR	41642.0	NM_022427	64378.0	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	4.0	3.23	11.1	8.1	2.8	6.43	9.51	8.84	3.75
Merged-chr5-5333137-1	chr5	5332637	5333637	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	47114.0	NM_011074	18647.0	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	9.72	7.83	16.65	8.77	2.33	8.04	12.67	5.31	12.49
Merged-chr5-149635809-1	chr5	149635309	149636309	+	596.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347534, intron 1 of 16)	intron (NM_001347534, intron 1 of 16)	506.0	NM_013559	15505.0	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	43.48	39.17	42.55	33.06	42.45	65.91	31.69	38.91	36.85
Merged-chr2-159607778-1	chr2	159607278	159608278	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-339563.0	NR_040498	71081.0	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	11.44	2.3	4.62	4.05	2.33	4.82	7.39	3.1	5.0
Merged-chr7-43442673-1	chr7	43442173	43443173	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028849, intron 3 of 4)	Lx6|LINE|L1	-1399.0	NM_026695	110826.0	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	23.45	22.12	26.82	25.64	12.6	30.54	21.12	21.22	29.35
Merged-chr1-84449673-1	chr1	84449173	84450173	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-165028.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	5.15	7.83	8.32	8.77	7.93	6.43	9.51	0.88	13.12
Merged-chr5-124028041-1	chr5	124027541	124028541	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	URR1B|DNA|hAT-Charlie	4219.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	31.46	30.87	22.2	31.04	19.59	26.53	87.66	50.41	41.84
Merged-chr15-82348475-1	chr15	82347975	82348975	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026914, intron 2 of 2)	intron (NM_026914, intron 2 of 2)	2429.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	14.3	16.59	9.25	14.17	5.13	12.86	12.67	6.63	12.49
Merged-chr1-107566627-1	chr1	107566127	107567127	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23379.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	2.29	7.37	3.7	3.37	6.06	1.61	5.28	7.07	3.75
Merged-chr7-49843513-1	chr7	49843013	49844013	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133740, intron 13 of 15)	intron (NM_133740, intron 13 of 15)	65155.0	NM_133740	71974.0	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	2.29	3.23	3.7	2.7	5.13	1.61	4.22	2.21	0.0
Merged-chr9-22625003-1	chr9	22624503	22625503	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 9 of 22)	intron (NM_001360259, intron 9 of 22)	149288.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	2.86	5.53	1.85	4.05	4.67	1.61	5.28	2.21	7.49
Merged-chr6-114916068-1	chr6	114915568	114916568	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 2 of 5)	intron (NM_001356371, intron 2 of 5)	5753.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	22.88	21.2	21.27	23.62	20.99	24.11	35.91	28.3	18.74
Merged-chr1-52858385-1	chr1	52857885	52858885	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146108, intron 2 of 13)	RLTR13C2|LTR|ERVK	13347.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	3.43	3.69	0.92	1.35	1.4	3.22	1.06	6.19	8.12
Merged-chr9-100506090-1	chr9	100505590	100506590	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010878, intron 2 of 3)	intron (NM_010878, intron 2 of 3)	766.0	NM_001324530	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	243.69	329.46	197.94	186.9	185.2	171.21	227.08	230.81	123.66
Merged-chr8-117157113-1	chr8	117156613	117157613	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1022.0	NM_001081151	209239.0	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	44.05	31.79	42.55	46.56	37.79	55.46	42.25	35.82	41.22
Merged-chr10-118585987-1	chr10	118585487	118586487	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-29462.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	7.44	4.15	2.77	6.07	3.27	4.02	2.11	8.4	1.25
Merged-chr16-17001243-1	chr16	17000743	17001743	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038663, intron 1 of 7)	ORR1B2|LTR|ERVL-MaLR	17861.0	NM_001038663	26413.0	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	17.16	8.75	7.4	8.77	3.73	0.0	9.51	6.19	4.37
Merged-chr12-36511505-1	chr12	36511005	36512005	+	596.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289503, intron 6 of 9)	intron (NM_001289503, intron 6 of 9)	95889.0	NR_037309	100499526.0		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	5.15	6.45	3.7	4.05	2.8	3.22	7.39	0.88	4.37
Merged-chr16-36067604-1	chr16	36067104	36068104	+	596.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027342, intron 1 of 4)	B3A|SINE|B2	3911.0	NM_027342	70186.0	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	39.47	52.99	53.65	39.81	26.59	26.53	54.92	55.71	24.98
Merged-chr4-151851383-3	chr4	151850892	151851892	+	595.861084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081557, intron 1 of 23)	B4|SINE|B4	10376.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.58	4.61	7.4	6.07	1.87	8.04	3.17	2.65	2.5
Merged-chr5-43845798-2	chr5	43845315	43846315	+	595.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22994.0	NM_007646	12494.0	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	44.62	43.77	35.15	49.93	31.72	36.17	47.53	30.51	24.36
Merged-chr1-34841919-2	chr1	34841472	34842472	+	595.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	1078.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	124.14	141.0	91.57	143.04	150.68	123.78	203.84	254.25	69.95
Merged-chr7-118797822-1	chr7	118797322	118798322	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027815, intron 19 of 30)	intron (NM_027815, intron 19 of 30)	57551.0	NM_027815	71517.0	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	164.18	200.44	134.12	175.43	151.15	109.32	166.88	159.18	103.67
Merged-chr15-57881003-2	chr15	57880517	57881517	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024207, intron 2 of 7)	intron (NM_024207, intron 2 of 7)	11401.0	NM_024207	67819.0	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	20.59	11.98	20.35	7.42	15.86	20.09	20.07	17.69	11.24
Merged-chr2-114605415-2	chr2	114604889	114605889	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025675, intron 3 of 8)	L1_Mus4|LINE|L1	49575.0	NM_001356438	66632.0	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	2.29	4.61	3.7	1.35	3.73	5.63	5.28	2.65	2.5
Merged-chr4-119667574-1	chr4	119667074	119668074	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8629.0	NM_008191	14916.0	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	1.14	1.84	2.77	6.07	0.47	0.0	1.06	0.44	0.0
Merged-chr11-109377506-2	chr11	109377012	109378012	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	MTD|LTR|ERVL-MaLR	-13858.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	20.59	20.27	20.35	31.71	17.73	21.7	42.25	26.53	16.86
Merged-chr18-53463871-1	chr18	53463371	53464371	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033281)	promoter-TSS (NM_001033281)	-675.0	NM_001033281	225518.0	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	2.86	0.0	5.55	1.35	0.0	4.82	0.0	0.0	0.0
Merged-chr3-57847119-2	chr3	57846606	57847606	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019410, intron 1 of 2)	CpG	651.0	NM_019410	18645.0	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	6.86	7.83	11.1	10.8	4.2	17.68	8.45	5.31	4.37
Merged-chr5-12184580-1	chr5	12184080	12185080	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5b|LINE|L1	-198586.0	NM_028882	108151.0	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	13.73	7.83	7.4	8.1	10.26	2.41	22.18	21.67	8.74
Merged-chr11-49103476-1	chr11	49102976	49103976	+	595.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10281.0	NM_146337	258334.0	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	11.44	11.06	4.62	9.45	4.67	6.43	12.67	3.98	5.62
Merged-chrX-155171905-1	chrX	155171405	155172405	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24056.0	NM_001081671	73347.0	Mm.63848	NM_028511	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	31.46	37.32	16.65	29.01	25.66	19.29	29.57	30.51	16.24
Merged-chr15-101339681-2	chr15	101339163	101340163	+	595.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29689.0	NR_035462	100316694.0		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	2.29	1.38	3.7	2.02	2.8	4.02	5.28	1.77	0.0
Merged-chr11-106098532-1	chr11	106098032	106099032	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011947, intron 2 of 15)	intron (NM_011947, intron 2 of 15)	13630.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	72.65	71.42	46.25	45.88	43.85	69.93	71.82	100.81	75.57
Merged-chr1-180987954-2	chr1	180987459	180988459	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29610.0	NM_001312918	13849.0	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	5.15	2.76	4.62	6.07	1.4	4.82	2.11	1.33	1.25
Merged-chr10-127595476-1	chr10	127594976	127595976	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	25672.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	265.43	246.06	214.59	320.49	230.92	386.62	349.6	371.42	207.97
Merged-chr9-90059527-1	chr9	90059027	90060027	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312649, intron 1 of 10)	RMER15|LTR|ERVL	5260.0	NM_001312649	13036.0	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	106.97	103.22	81.4	88.39	71.84	71.54	145.75	106.56	104.92
Merged-chr8-105546652-1	chr8	105546152	105547152	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	19412.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	10.3	14.75	12.95	12.82	9.33	16.08	5.28	3.1	9.37
Merged-chr10-39470589-1	chr10	39470089	39471089	+	595.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	100790.0	NM_001122893	14360.0	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	5.72	1.84	5.55	4.05	0.93	3.22	2.11	2.65	1.25
Merged-chr8-6138826-2	chr8	6138315	6139315	+	595.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1033528.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	12.01	9.68	5.55	4.72	4.67	3.22	10.56	13.27	3.75
Merged-chr4-125099676-2	chr4	125099144	125100144	+	595.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151472, intron 4 of 7)	intron (NR_151472, intron 4 of 7)	14510.0	NR_151472	70088.0	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	6.86	13.82	11.1	14.84	5.13	3.22	12.67	5.31	7.49
Merged-chr12-85287165-2	chr12	85286654	85287654	+	595.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-1437.0	NM_172414	72350.0	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	19.45	31.79	9.25	35.09	20.06	9.65	23.24	11.5	12.49
Merged-chr13-60826211-2	chr13	60825714	60826714	+	595.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23370.0	NM_027344	70202.0	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	6.29	7.83	7.4	4.72	5.6	1.61	3.17	3.54	8.74
Merged-chr14-21049058-3	chr14	21048569	21049569	+	595.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	B3|SINE|B2	3373.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	11.44	19.35	16.65	7.42	5.6	17.68	12.67	10.61	9.99
Merged-chr2-153528476-3	chr2	153527999	153528999	+	595.333313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001134300, intron 1 of 10)	CpG	1472.0	NM_001134300	329540.0	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	5.15	1.38	9.25	10.12	6.53	10.45	16.9	5.75	7.49
Merged-chr1-67017300-1	chr1	67016800	67017800	+	595.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190984, intron 4 of 9)	MLTR31FA_MM|LTR|ERVK	21534.0	NM_001190984	14768.0	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	8.58	9.68	12.95	0.67	1.87	3.22	3.17	0.44	0.0
Merged-chr13-89379325-1	chr13	89378825	89379825	+	595.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-161311.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	14.87	17.51	10.17	0.0	3.27	3.22	26.4	30.51	24.36
Merged-chr6-128630646-1	chr6	128630146	128631146	+	595.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7712.0	NM_010737	17057.0	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	14.87	16.59	14.8	13.49	16.33	16.08	19.01	15.48	8.74
Merged-chr16-45757088-2	chr16	45756585	45757585	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357078, intron 14 of 16)	intron (NM_001357078, intron 14 of 16)	-14130.0	NM_172511	213012.0	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	5.72	2.76	12.95	9.45	5.6	4.02	5.28	4.42	4.37
Merged-chr14-50799998-2	chr14	50799499	50800499	+	595.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4271.0	NM_001111119	239083.0	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	5.72	2.76	6.47	7.42	2.8	11.25	3.17	1.77	5.0
Merged-chr7-67529240-2	chr7	67528743	67529743	+	595.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028144, intron 8 of 8)	intron (NR_028144, intron 8 of 8)	115993.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	36.04	17.97	15.72	22.27	15.86	25.72	6.34	5.75	3.75
Merged-chr18-75465128-2	chr18	75464638	75465638	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 10 of 11)	intron (NM_201354, intron 10 of 11)	-49507.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	17.73	5.53	8.32	10.8	11.2	8.04	23.24	12.82	11.87
Merged-chr16-52089616-2	chr16	52089116	52090116	+	595.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	58067.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	10.87	7.37	0.92	4.05	6.53	16.08	11.62	4.42	6.25
Merged-chr19-3581598-3	chr19	3581192	3582192	+	595.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MuRRS-int|LTR|ERV1	-5943.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	14.3	13.82	13.87	10.12	7.0	12.86	6.34	3.98	15.61
Merged-chr11-52343407-3	chr11	52342901	52343901	+	595.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17461.0	NM_011694	22333.0	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	4.58	1.84	1.85	4.05	5.13	2.41	3.17	0.88	1.25
Merged-chr8-105930815-3	chr8	105930325	105931325	+	595.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_173432, exon 3 of 3)	3' UTR (NM_173432, exon 3 of 3)	3037.0	NM_023182	109660.0	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	3.43	3.23	3.7	4.05	1.4	3.22	4.22	2.65	5.0
Merged-chr5-31941747-2	chr5	31941245	31942245	+	595.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-194727.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	24.03	20.27	5.55	25.64	19.13	16.88	8.45	3.54	5.0
Merged-chr3-88140046-1	chr3	88139546	88140546	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2326.0	NM_001310593	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	92.67	108.75	62.9	114.03	135.29	127.8	94.0	121.6	73.69
Merged-chr11-23763625-1	chr11	23763125	23764125	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009044, intron 1 of 9)	B4A|SINE|B4	7345.0	NM_009044	19696.0	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	27.46	15.21	9.25	26.31	9.8	22.51	25.35	14.15	27.48
Merged-chr10-117810002-1	chr10	117809502	117810502	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17297.0	NM_134010	103468.0	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	5.15	3.69	0.0	4.72	2.33	8.04	3.17	5.31	9.37
Merged-chr12-40508051-1	chr12	40507551	40508551	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	61998.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	10.87	4.61	12.95	6.75	4.2	5.63	5.28	4.42	5.0
Merged-chr7-122453989-1	chr7	122453489	122454489	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 3 of 16)	intron (NM_001316672, intron 3 of 16)	164864.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	2.29	1.84	1.85	12.14	3.27	3.22	3.17	3.54	3.12
Merged-chr2-69823327-1	chr2	69822827	69823827	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360394, intron 1 of 3)	intron (NM_001360394, intron 1 of 3)	486.0	NM_001360394	277396.0	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	2.86	1.38	2.77	4.05	1.4	3.22	2.11	0.88	1.25
Merged-chr11-75548484-1	chr11	75547984	75548984	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001199284, intron 5 of 13)	intron (NM_001199284, intron 5 of 13)	-2945.0	NR_039553	100628624.0		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	108.69	100.91	78.62	90.41	63.45	126.19	94.0	76.94	53.71
Merged-chr10-81193271-1	chr10	81192771	81193771	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007828)	TTS (NM_007828)	-1420.0	NR_015477	69678.0	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	26.31	18.89	22.2	22.27	21.46	12.86	23.24	16.8	9.99
Merged-chr7-28467576-1	chr7	28467076	28468076	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001141921)	TTS (NM_001141921)	15338.0	NM_001141921	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	1.72	0.46	1.85	4.72	0.0	1.61	5.28	0.88	1.87
Merged-chr16-23611647-1	chr16	23611147	23612147	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023386, intron 1 of 1)	RMER10B|LTR|ERVL	1728.0	NM_023386	67775.0	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	78.94	78.33	83.25	96.48	76.51	100.47	132.02	168.02	66.82
Merged-chr5-140763421-1	chr5	140762921	140763921	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 2 of 3)	ID_B1|SINE|B4	39294.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	37.18	55.29	35.15	41.83	54.11	60.28	27.46	23.88	22.48
Merged-chr17-7911164-1	chr17	7910664	7911664	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-14836.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	1.14	0.0	0.0	2.7	0.0	0.0	2.11	0.0	0.0
Merged-chr5-104039743-1	chr5	104039243	104040243	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-7121.0	NM_028794	74167.0	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	2.86	1.84	0.0	2.7	2.33	2.41	6.34	0.0	0.0
Merged-chr17-24167980-1	chr17	24167480	24168480	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361534, intron 1 of 3)	intron (NM_001361534, intron 1 of 3)	829.0	NM_001361535	11984.0	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	267.72	348.81	248.81	218.61	209.0	172.01	214.41	283.87	193.6
Merged-chr5-90413462-1	chr5	90412962	90413962	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	46465.0	NR_045618	791294.0	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	-	predicted gene 9958	ncRNA	4.0	5.07	3.7	8.1	4.67	6.43	3.17	4.42	5.0
Merged-chr1-121404825-1	chr1	121404325	121405325	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-26242.0	NM_001025156	70829.0	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	1.14	2.3	6.47	4.72	1.87	1.61	3.17	1.77	1.25
Merged-chr12-57281622-1	chr12	57281122	57282122	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164370, intron 1 of 9)	intron (NM_001164370, intron 1 of 9)	51197.0	NM_001164370	73490.0	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	6.86	4.15	3.7	4.05	2.33	4.82	3.17	5.31	1.25
Merged-chrX-94636159-1	chrX	94635659	94636659	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008179)	promoter-TSS (NM_008179)	90.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	2.29	1.38	0.0	8.1	4.67	12.06	1.06	0.44	0.0
Merged-chr8-94011195-1	chr8	94010695	94011695	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011787, intron 1 of 13)	intron (NM_011787, intron 1 of 13)	1445.0	NM_011787	23802.0	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	27.46	39.17	20.35	24.29	23.79	41.8	30.63	22.55	19.36
Merged-chr5-64683574-1	chr5	64683074	64684074	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72875.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.0	6.45	9.25	12.82	5.6	11.25	3.17	3.98	8.74
Merged-chr2-112273645-1	chr2	112273145	112274145	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133649, intron 1 of 24)	B3A|SINE|B2	7331.0	NM_133649	107723.0	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	1.72	5.07	4.62	4.72	10.26	6.43	6.34	2.65	5.0
Merged-chr10-75217984-1	chr10	75217484	75218484	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 1 of 18)	ORR1B1|LTR|ERVL-MaLR	5594.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	12.59	7.37	3.7	1.35	2.8	8.84	14.79	3.98	5.0
Merged-chr5-103722748-2	chr5	103722246	103723246	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur1|SINE|Alu	-31416.0	NM_133919	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	46.34	36.86	31.45	37.11	12.13	16.88	51.75	34.49	34.97
Merged-chr15-76230975-1	chr15	76230475	76231475	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163542, intron 1 of 33)	intron (NM_001163542, intron 1 of 33)	403.0	NM_001163542	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	2.86	2.3	1.85	2.02	2.8	0.8	6.34	0.88	5.0
Merged-chrX-19153837-1	chrX	19153337	19154337	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6866.0	NR_029807	723828.0		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	6.29	6.45	3.7	4.05	6.06	9.65	9.51	9.29	5.62
Merged-chr10-99303100-1	chr10	99302600	99303600	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	39869.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	37.18	40.09	12.02	37.11	39.65	19.29	38.02	23.88	14.36
Merged-chr19-53534169-1	chr19	53533669	53534669	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	4851.0	NM_001085390	240672.0	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	2.86	1.38	7.4	3.37	0.47	3.22	2.11	0.88	2.5
Merged-chr8-122139986-1	chr8	122139486	122140486	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-142155.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	1.14	1.84	0.0	2.02	1.4	1.61	3.17	0.0	3.12
Merged-chr4-129036659-2	chr4	129036166	129037166	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21605.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	37.18	30.87	38.85	31.71	20.99	36.17	29.57	33.16	21.23
Merged-chr1-89196313-1	chr1	89195813	89196813	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	125898.0	NM_133816	98402.0	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	1.72	3.23	1.85	0.67	2.33	0.0	1.06	1.33	1.25
Merged-chr12-25197441-1	chr12	25196941	25197941	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68267.0	NR_045844	432641.0	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	10.3	6.91	15.72	16.87	5.6	15.27	10.56	10.17	11.87
Merged-chr7-47012867-1	chr7	47012367	47013367	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4453.0	NM_175318	101685.0	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	23.45	13.36	12.95	20.92	16.33	9.65	26.4	8.84	25.61
Merged-chr11-72488946-1	chr11	72488446	72489446	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153060, intron 1 of 12)	CpG	974.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	5.15	1.84	0.0	3.37	3.73	2.41	1.06	4.86	0.0
Merged-chr9-95688299-1	chr9	95687799	95688799	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029620, intron 6 of 8)	intron (NM_029620, intron 6 of 8)	50671.0	NM_029620	76477.0	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	9.72	7.83	6.47	7.42	5.6	9.65	8.45	6.63	3.75
Merged-chr4-105252834-2	chr4	105252350	105253350	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	95503.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	46.34	33.18	14.8	6.07	7.46	7.23	34.85	30.51	17.49
Merged-chr10-68442935-1	chr10	68442435	68443435	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028491, intron 5 of 7)	intron (NM_028491, intron 5 of 7)	98940.0	NM_028491	73287.0	Mm.141830	NM_028491	ENSMUSG00000019945	Cabcoco1	1700040L02Rik	ciliary associated calcium binding coiled-coil 1	protein-coding	10.87	0.92	1.85	7.42	6.06	0.0	4.22	1.77	5.62
Merged-chr16-4405555-1	chr16	4405055	4406055	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009624, intron 2 of 10)	intron (NM_009624, intron 2 of 10)	14943.0	NM_001291910	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	8.01	5.07	3.7	9.45	3.27	4.82	1.06	3.54	2.5
Merged-chr10-83533423-1	chr10	83532923	83533923	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153543, intron 1 of 22)	intron (NM_153543, intron 1 of 22)	717.0	NM_153543	216188.0	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.57	3.69	1.85	3.37	0.93	1.61	6.34	1.33	4.37
Merged-chr18-36724938-1	chr18	36724438	36725438	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009841)	TTS (NM_009841)	1877.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	64.07	110.59	30.52	60.05	69.04	60.28	34.85	26.97	39.97
Merged-chr6-32996765-1	chr6	32996265	32997265	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63495.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	22.31	40.55	40.7	19.57	19.13	27.33	14.79	21.22	18.11
Merged-chr11-114791068-1	chr11	114790568	114791568	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001102615)	TTS (NM_001102615)	4824.0	NM_028055	72014.0	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	11.44	2.76	0.0	2.02	6.06	4.02	2.11	4.86	1.25
Merged-chr15-40144364-1	chr15	40143864	40144864	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256056, intron 2 of 3)	intron (NM_001256056, intron 2 of 3)	9999.0	NM_001256056	328531.0	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	4.0	2.76	1.85	4.05	0.93	4.02	4.22	3.98	5.0
Merged-chr17-47526795-1	chr17	47526295	47527295	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	21744.0	NM_001081635	12445.0	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	9.15	6.91	7.4	20.24	14.46	12.06	16.9	13.27	5.0
Merged-chr10-7846088-1	chr10	7845588	7846588	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172785, intron 2 of 5)	intron (NM_172785, intron 2 of 5)	9707.0	NR_039563	100628581.0		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	42.9	38.25	33.3	49.25	43.39	40.19	39.08	31.84	17.49
Merged-chr4-11126748-1	chr4	11126248	11127248	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_151526, exon 3 of 3)	non-coding (NR_151526, exon 3 of 3)	2790.0	NR_151526	100503518.0	Mm.102270	NR_151526	ENSMUSG00000086765	Gm11827	-	predicted gene 11827	ncRNA	10.87	6.91	12.95	6.07	4.67	8.04	7.39	7.96	14.99
Merged-chr17-35265415-1	chr17	35264915	35265915	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001267808, intron 7 of 11)	intron (NM_001267808, intron 7 of 11)	2292.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	38.9	32.72	8.32	25.64	4.67	8.84	24.29	21.67	13.12
Merged-chr1-43444944-1	chr1	43444444	43445444	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010879)	promoter-TSS (NM_010879)	-807.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	15.45	11.98	7.4	25.64	23.79	12.86	31.69	28.3	6.25
Merged-chr1-159291109-1	chr1	159290609	159291609	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011931, intron 11 of 19)	intron (NM_011931, intron 11 of 19)	-2664.0	NR_144489	100846986.0		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	6.29	5.99	7.4	9.45	8.86	6.43	3.17	7.52	6.87
Merged-chr6-121179195-3	chr6	121178690	121179690	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4477.0	NR_130903	74043.0	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	4.58	2.3	0.0	8.1	0.47	0.8	2.11	1.77	1.25
Merged-chr7-135768430-1	chr7	135767930	135768930	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52051.0	NM_001081117	17345.0	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	56.06	35.94	49.95	37.11	35.92	55.46	72.88	62.79	56.83
Merged-chr3-56000440-1	chr3	55999940	56000940	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030595, intron 24 of 57)	intron (NM_030595, intron 24 of 57)	153335.0	NR_033592	71182.0	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	2.86	2.76	3.7	4.05	5.6	1.61	0.0	3.98	6.25
Merged-chr17-42915156-2	chr17	42914603	42915603	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1C|Other|Other	-38679.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	31.46	19.35	22.2	15.52	13.06	16.08	26.4	31.39	32.48
Merged-chr3-121953778-1	chr3	121953278	121954278	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172525, intron 1 of 22)	CpG	549.0	NM_172525	214137.0	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	19.45	7.37	3.7	9.45	11.2	11.25	26.4	12.82	8.74
Merged-chr7-142400249-1	chr7	142399749	142400749	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12379.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	121.85	100.45	128.57	48.58	47.12	48.23	91.89	88.43	74.94
Merged-chr16-20803373-1	chr16	20802873	20803873	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68862.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.58	1.84	5.55	0.0	2.33	8.04	3.17	2.21	6.87
Merged-chr11-106777152-1	chr11	106776652	106777652	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027785, exon 3 of 8)	non-coding (NR_027785, exon 3 of 8)	2314.0	NM_001353435	50776.0	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	mtPolB|p55|polG-beta	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	13.73	8.75	3.7	9.45	5.13	8.84	5.28	4.42	9.99
Merged-chr19-5073818-1	chr19	5073318	5074318	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5740.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	9.15	8.29	5.55	8.1	6.53	6.43	36.97	51.29	11.87
Merged-chr1-91068035-1	chr1	91067535	91068535	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	14591.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	12.59	18.43	9.25	11.47	3.27	0.0	9.51	6.63	8.12
Merged-chr5-118606837-1	chr5	118606337	118607337	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	46118.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.72	3.69	7.4	7.42	1.4	0.0	1.06	2.65	6.25
Merged-chr1-43327307-1	chr1	43326807	43327807	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	-118444.0	NM_010879	17974.0	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.29	8.29	0.0	3.37	6.06	1.61	5.28	2.65	1.87
Merged-chr2-90582486-1	chr2	90581986	90582986	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1839.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	13.16	13.82	0.92	9.45	3.27	13.66	9.51	10.17	5.62
Merged-chr12-112562746-1	chr12	112562246	112563246	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	-26038.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	6.29	6.45	14.8	8.77	2.8	3.22	5.28	2.21	8.12
Merged-chr15-99154713-1	chr15	99154213	99155213	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139140, intron 2 of 12)	RLTR45|LTR|ERVK	27868.0	NM_139140	72572.0	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	2.86	1.84	0.0	10.8	6.06	8.84	10.56	3.98	8.74
Merged-chr5-120130393-1	chr5	120129893	120130893	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028762, intron 11 of 23)	ORR1D1|LTR|ERVL-MaLR	8870.0	NR_045793	100503427.0	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	-	predicted gene 10390	ncRNA	3.43	1.38	0.0	0.67	2.8	3.22	1.06	0.44	6.87
Merged-chr2-152615732-1	chr2	152615232	152616232	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	7321.0	NM_001039122	654459.0	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|mBD-25	defensin beta 25	protein-coding	5.72	2.3	1.85	2.02	2.8	0.8	7.39	0.88	5.0
Merged-chr5-20257327-1	chr5	20256827	20257827	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 6 of 22)	intron (NM_001170746, intron 6 of 22)	349809.0	NM_015823	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	52.06	60.82	30.52	51.28	31.26	41.8	26.4	33.6	35.6
Merged-chr6-137475366-1	chr6	137474866	137475866	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR13D3A1|LTR|ERVK	44529.0	NM_001271589	13860.0	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	9.15	5.07	3.7	6.07	2.8	5.63	3.17	4.42	6.87
Merged-chr1-171681205-1	chr1	171680705	171681705	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360767)	promoter-TSS (NM_001360767)	-787.0	NM_007649	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	25.74	41.01	42.55	32.39	36.39	39.39	41.19	56.6	29.98
Merged-chr3-31135465-1	chr3	31134965	31135965	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14455.0	NM_008770	18417.0	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	45.19	43.31	37.0	50.6	27.99	53.05	47.53	59.69	33.1
Merged-chr14-51262595-1	chr14	51262095	51263095	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-6483.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	2.29	5.53	0.0	4.72	2.33	1.61	1.06	2.21	2.5
Merged-chr16-93839296-1	chr16	93838796	93839796	+	595.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045529, intron 1 of 16)	RMER6D|LTR|ERVK	7175.0	NM_001045529	338467.0	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	10.87	8.29	3.7	13.49	7.93	12.06	24.29	16.8	13.74
Merged-chrX-77511472-1	chrX	77510972	77511972	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	CpG	245.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	91.53	94.46	68.45	107.95	60.18	97.26	115.12	93.3	51.21
Merged-chr15-31648157-1	chr15	31647657	31648657	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR78|LTR|ERV1	46041.0	NM_001356313	68073.0	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	4.0	4.61	3.7	9.45	6.06	3.22	2.11	3.1	3.12
Merged-chr4-107084410-1	chr4	107083910	107084910	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175471, exon 9 of 9)	3' UTR (NM_175471, exon 9 of 9)	-12481.0	NM_172873	242603.0	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	4.0	1.84	7.4	0.67	0.93	1.61	1.06	2.65	2.5
Merged-chr7-29998276-2	chr7	29997781	29998781	+	595.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167873, intron 6 of 9)	intron (NM_001167873, intron 6 of 9)	14326.0	NM_001167872	243905.0	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	16.59	18.43	12.95	33.06	28.46	12.86	5.28	7.07	12.49
Merged-chr11-54788461-1	chr11	54787961	54788961	+	595.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178626)	promoter-TSS (NM_178626)	-758.0	NM_178626	72729.0	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	29.75	28.57	14.8	26.31	21.93	23.31	14.79	22.11	16.86
Merged-chr13-34643147-2	chr13	34642639	34643639	+	594.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	9542.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	12.01	6.45	4.62	8.1	7.0	4.82	3.17	1.33	4.37
Merged-chr18-77869750-2	chr18	77869223	77870223	+	594.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013831, intron 6 of 14)	intron (NM_013831, intron 6 of 14)	-68744.0	NM_001195633	100502841.0	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	8.58	3.69	5.55	4.72	8.86	2.41	8.45	7.52	2.5
Merged-chr13-78210922-2	chr13	78210435	78211435	+	594.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045195, intron 1 of 2)	intron (NR_045195, intron 1 of 2)	-12062.0	NM_010151	13865.0	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	4.0	4.61	0.0	2.7	1.87	1.61	6.34	0.0	2.5
Merged-chr4-107164216-2	chr4	107163726	107164726	+	594.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025617, intron 3 of 4)	intron (NM_025617, intron 3 of 4)	14140.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	2.29	1.84	3.7	2.7	5.13	12.86	5.28	0.88	2.5
Merged-chr13-101736302-3	chr13	101735768	101736768	+	594.722229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001077495, intron 2 of 15)	ID|SINE|ID	31949.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	72.65	58.52	68.45	57.35	34.06	47.42	64.43	49.52	24.98
Merged-chr6-116726348-1	chr6	116725848	116726848	+	594.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57E1|LTR|ERV1	-9590.0	NM_178768	319776.0	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	10.87	10.6	0.92	16.19	13.06	10.45	8.45	5.75	18.74
Merged-chr6-134432783-1	chr6	134432283	134433283	+	594.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355686, intron 5 of 5)	intron (NM_001355686, intron 5 of 5)	18355.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	16.02	12.9	12.95	22.94	10.73	12.86	21.12	17.69	15.61
Merged-chr10-80757932-2	chr10	80757447	80758447	+	594.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	2744.0	NM_199322	208266.0	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.29	7.83	3.7	6.75	2.8	9.65	12.67	3.98	0.0
Merged-chr17-35186862-2	chr17	35186339	35187339	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010734, intron 2 of 3)	intron (NM_010734, intron 2 of 3)	1601.0	NM_010734	16988.0	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	51.48	30.87	37.92	58.03	21.46	57.07	53.87	60.58	61.83
Merged-chr19-5812212-2	chr19	5811688	5812688	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9516.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	10.3	11.52	5.55	8.1	7.46	4.82	13.73	2.65	2.5
Merged-chr2-90547503-2	chr2	90547002	90548002	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	33145.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	20.02	34.1	33.3	26.99	19.59	16.08	40.14	36.26	39.35
Merged-chr11-109860286-2	chr11	109859763	109860763	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14385.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	10.3	17.05	9.25	3.37	1.4	0.0	13.73	5.75	6.87
Merged-chr14-70766127-1	chr14	70765627	70766627	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023045, intron 1 of 27)	CpG	501.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	45.76	21.66	32.37	45.88	24.72	31.35	96.11	31.39	24.98
Merged-chr4-133154226-1	chr4	133153726	133154726	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153423, intron 1 of 8)	CT-rich|Low_complexity|Low_complexity	23593.0	NM_153423	242687.0	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	41.19	45.62	30.52	32.39	21.93	26.53	76.05	53.5	45.59
Merged-chr12-75638522-1	chr12	75638022	75639022	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028203, intron 1 of 1)	Lx7|LINE|L1	-6773.0	NR_038063	665931.0	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	6.86	1.38	12.02	1.35	3.73	6.43	6.34	4.42	3.75
Merged-chr8-119439026-2	chr8	119438551	119439551	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027950, intron 1 of 5)	intron (NM_027950, intron 1 of 5)	1889.0	NM_027950	71839.0	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	28.6	19.81	17.57	16.87	14.0	35.37	22.18	26.09	29.35
Merged-chr17-50581363-2	chr17	50580863	50581863	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	71816.0	NM_013880	224860.0	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	25.17	30.87	17.57	15.52	22.39	6.43	12.67	8.4	6.87
Merged-chr8-85517461-1	chr8	85516961	85517961	+	594.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173866, intron 7 of 11)	intron (NM_173866, intron 7 of 11)	24844.0	NM_173866	108682.0	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	4.58	2.76	9.25	4.72	6.06	4.82	21.12	22.55	9.37
Merged-chr3-137820947-1	chr3	137820447	137821447	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37332.0	NR_105801	102466638.0		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	16.59	20.74	12.95	20.24	13.53	4.82	10.56	9.73	5.0
Merged-chr7-47146523-2	chr7	47146022	47147022	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12838.0	NM_013643	19259.0	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	10.87	4.61	9.25	8.1	4.67	3.22	6.34	1.33	5.0
Merged-chr4-133424321-2	chr4	133423826	133424826	+	594.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001358455)	TTS (NM_001358455)	54550.0	NR_039582	100628620.0		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	4.58	7.37	11.1	5.4	1.87	0.0	2.11	0.44	5.0
Merged-chr18-75599194-2	chr18	75598694	75599694	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201354, intron 6 of 11)	intron (NM_201354, intron 6 of 11)	84549.0	NR_045879	100038353.0	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	-	predicted gene 10532	ncRNA	0.57	2.76	1.85	7.42	2.33	3.22	1.06	0.44	10.62
Merged-chr13-56168056-1	chr13	56167556	56168556	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10829.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	6.29	2.76	0.0	9.45	3.27	4.82	9.51	3.98	6.25
Merged-chr13-48998773-1	chr13	48998273	48999273	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30661.0	NR_015601	68128.0	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	4.58	4.15	1.85	3.37	1.87	1.61	4.22	0.44	3.75
Merged-chr18-50138644-1	chr18	50138144	50139144	+	594.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008292, intron 2 of 23)	L1MB1|LINE|L1	10443.0	NM_008292	15488.0	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	6.86	8.75	7.4	8.77	4.67	0.0	6.34	3.54	3.75
Merged-chr13-56165737-2	chr13	56165228	56166228	+	594.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	13157.0	NM_145976	212937.0	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	13.73	6.91	9.25	9.45	7.93	8.04	6.34	6.63	8.74
Merged-chr16-38506242-2	chr16	38505750	38506750	+	594.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024273, intron 4 of 6)	intron (NM_024273, intron 4 of 6)	16413.0	NM_024273	76916.0	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	2.86	6.45	0.92	7.42	0.0	1.61	4.22	1.33	7.49
Merged-chr4-33148056-1	chr4	33147556	33148556	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008075, intron 2 of 9)	B3|SINE|B2	15500.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	4.58	2.76	0.0	3.37	0.47	0.0	1.06	2.21	2.5
Merged-chr3-19895590-1	chr3	19895090	19896090	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_027985, exon 1 of 1)	non-coding (NR_027985, exon 1 of 1)	719.0	NR_027985	70808.0	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	40.62	29.95	34.22	35.09	22.86	25.72	39.08	19.01	13.12
Merged-chr6-125596399-1	chr6	125595899	125596899	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 10 of 51)	CT-rich|Low_complexity|Low_complexity	43451.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	8.01	5.07	6.47	6.75	3.73	2.41	7.39	4.42	8.74
Merged-chr11-116625795-1	chr11	116625295	116626295	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1224.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	22.88	26.26	24.97	27.66	15.39	25.72	43.3	56.6	10.62
Merged-chr9-65630931-1	chr9	65630431	65631431	+	594.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028030, intron 1 of 7)	CpG	349.0	NM_028030	71973.0	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	22.88	2.3	4.62	14.84	3.73	1.61	15.84	3.98	3.12
Merged-chr10-93191165-1	chr10	93190665	93191665	+	594.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	28380.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	4.0	4.15	5.55	1.35	2.8	9.65	21.12	15.03	19.98
Merged-chr17-29049302-3	chr17	29048803	29049803	+	594.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16643.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	6.29	4.15	7.4	7.42	1.87	1.61	6.34	0.44	1.25
Merged-chr4-154939184-2	chr4	154938683	154939683	+	594.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11106.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	36.04	30.87	37.92	33.74	14.93	36.97	12.67	15.92	15.61
Merged-chr11-111282501-2	chr11	111282001	111283001	+	594.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	216337.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.86	5.53	5.55	4.72	9.33	6.43	3.17	2.21	3.75
Merged-chr2-84488100-1	chr2	84487600	84488600	+	594.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-11325.0	NM_001177320	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	3.43	2.76	0.0	0.67	7.46	4.02	7.39	8.4	9.37
Merged-chr11-70598747-2	chr11	70598261	70599261	+	594.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-17133.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	10.3	9.68	5.55	18.22	4.2	12.06	3.17	0.88	2.5
Merged-chr16-93938665-3	chr16	93938182	93939182	+	594.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019500, intron 2 of 2)	intron (NM_019500, intron 2 of 2)	-8865.0	NM_001165926	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	5.15	7.83	3.7	6.75	6.06	4.82	10.56	13.27	0.0
Merged-chr1-94532955-1	chr1	94532455	94533455	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-264487.0	NR_040473	74689.0	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	2.86	2.3	0.0	3.37	5.13	0.0	4.22	3.98	1.25
Merged-chr7-5054103-1	chr7	5053603	5054603	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026900)	TTS (NM_026900)	-2049.0	NM_001290429	232821.0	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	4.0	2.76	2.77	0.0	0.93	1.61	3.17	0.0	1.25
Merged-chr2-104574278-1	chr2	104573778	104574778	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	14819.0	NR_040323	74959.0	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA	2.86	5.07	0.0	2.02	2.8	3.22	1.06	1.33	3.75
Merged-chr7-130709649-1	chr7	130709149	130710149	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021314, intron 1 of 17)	intron (NM_021314, intron 1 of 17)	17093.0	NM_021314	57752.0	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	4.0	3.69	0.0	5.4	0.93	5.63	7.39	7.96	3.75
Merged-chr5-148499732-1	chr5	148499232	148500232	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51941.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	12.59	11.52	10.17	7.42	5.6	6.43	6.34	2.65	5.62
Merged-chr7-104206351-1	chr7	104205851	104206851	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12444.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.57	2.3	0.0	4.05	1.87	1.61	3.17	2.21	6.25
Merged-chr11-79030790-1	chr11	79030290	79031290	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045873, intron 4 of 5)	intron (NR_045873, intron 4 of 5)	7193.0	NR_045873	790910.0	Mm.440410	NR_045873		Gm11201	-	predicted gene 11201	ncRNA	2.86	2.76	7.4	7.42	2.33	6.43	2.11	0.88	4.37
Merged-chr2-26238193-1	chr2	26237693	26238693	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302956)	promoter-TSS (NM_001302956)	-794.0	NM_001302956	227638.0	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	2.86	3.23	1.85	7.42	3.73	12.86	10.56	5.31	4.37
Merged-chr19-17397016-1	chr19	17396516	17397516	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019437, intron 2 of 3)	intron (NM_019437, intron 2 of 3)	2973.0	NM_019437	54391.0	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	8.01	13.36	12.95	15.52	10.73	16.08	6.34	6.63	9.37
Merged-chr8-84071944-1	chr8	84071444	84072444	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	5108.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	12.01	8.75	19.42	11.47	5.13	20.09	6.34	4.86	8.74
Merged-chr2-73206171-1	chr2	73205671	73206671	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030091, intron 2 of 7)	intron (NM_030091, intron 2 of 7)	8276.0	NM_030091	67059.0	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	3.43	7.37	5.55	9.45	5.13	8.84	13.73	6.19	7.49
Merged-chrX-106184426-1	chrX	106183926	106184926	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1L|LTR|ERVL-MaLR	-2674.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	1.72	2.3	2.77	1.35	1.4	1.61	4.22	1.33	1.25
Merged-chr8-46072237-1	chr8	46071737	46072737	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207213, intron 5 of 17)	MTD|LTR|ERVL-MaLR	51909.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	5.72	11.52	14.8	6.07	7.46	8.04	4.22	7.52	13.74
Merged-chr1-171257381-1	chr1	171256881	171257881	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172845, intron 7 of 8)	intron (NM_172845, intron 7 of 8)	7252.0	NM_172845	240913.0	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	4.0	1.84	0.0	4.05	3.27	0.0	2.11	1.33	1.25
Merged-chr13-105054998-1	chr13	105054498	105055498	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029879)	promoter-TSS (NM_029879)	-68.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	13.73	5.07	1.85	24.96	12.13	16.88	12.67	5.75	8.74
Merged-chr7-44300136-1	chr7	44299636	44300636	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6823.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	3.43	4.15	1.85	2.02	3.73	8.04	11.62	8.4	6.25
Merged-chr2-29670366-2	chr2	29669869	29670869	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_054050, intron 1 of 23)	B3A|SINE|B2	50649.0	NM_001039086	107746.0	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	20.59	15.21	12.02	12.14	9.33	12.06	9.51	13.71	4.37
Merged-chr11-49829631-1	chr11	49829131	49830131	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013529, intron 15 of 18)	intron (NM_013529, intron 15 of 18)	-17120.0	NM_001163671	26420.0	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	6.86	2.3	5.55	3.37	5.13	2.41	5.28	1.33	11.24
Merged-chr3-8962835-1	chr3	8962335	8963335	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	1311.0	NM_001025262	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	6.29	9.68	13.87	12.14	3.73	8.04	5.28	5.75	1.25
Merged-chr2-24347703-1	chr2	24347203	24348203	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039701, intron 2 of 3)	intron (NM_001039701, intron 2 of 3)	2332.0	NM_001039701	16181.0	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	6.29	6.45	10.17	7.42	6.53	8.84	15.84	8.84	6.87
Merged-chr13-21441109-2	chr13	21440608	21441608	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001162919)	promoter-TSS (NM_001162919)	-55.0	NM_001162920	319207.0	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	6.86	17.05	14.8	10.8	12.6	17.68	8.45	7.52	8.74
Merged-chr11-11687836-2	chr11	11687320	11688320	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025597, intron 1 of 7)	intron (NM_001025597, intron 1 of 7)	1895.0	NM_001025597	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	76.66	124.41	79.55	64.77	64.84	53.85	74.99	91.53	68.07
Merged-chr13-97859154-1	chr13	97858654	97859654	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	108042.0	NR_152263	111365222.0	Mm.440079	NR_152263		Eyelinc18	-	uncharacterized EyeLinc18	ncRNA	4.58	0.92	0.92	2.7	1.87	1.61	6.34	3.98	2.5
Merged-chr16-22046140-1	chr16	22045640	22046640	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027488, intron 16 of 16)	PB1D10|SINE|Alu	36656.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	9.15	13.82	0.0	10.12	9.8	6.43	7.39	7.07	12.49
Merged-chr8-3313591-1	chr8	3313091	3314091	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-33974.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	47.48	48.38	61.05	30.36	30.79	42.6	34.85	27.86	41.22
Merged-chr4-88302466-1	chr4	88301966	88302966	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081184, intron 19 of 43)	intron (NM_001081184, intron 19 of 43)	136460.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	8.01	5.53	3.7	4.72	7.0	2.41	2.11	3.98	4.37
Merged-chr18-55040590-1	chr18	55040090	55041090	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47999.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.58	7.83	0.0	9.45	8.4	4.82	6.34	4.42	7.49
Merged-chr13-45414278-1	chr13	45413778	45414778	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	24536.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	5.72	12.44	3.7	19.57	11.2	19.29	11.62	6.19	9.37
Merged-chr3-90271671-1	chr3	90271171	90272171	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_201407, exon 12 of 28)	exon (NM_201407, exon 12 of 28)	1522.0	NR_105979	102465612.0		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	8.01	3.69	4.62	6.75	3.73	8.04	3.17	3.98	4.37
Merged-chr8-26681317-2	chr8	26680801	26681801	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143122.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	5.15	3.69	1.85	3.37	2.8	4.82	19.01	9.73	16.24
Merged-chr18-53905859-2	chr18	53905359	53906359	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152809, intron 3 of 12)	MIR|SINE|MIR	43746.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	8.58	15.67	9.25	18.22	12.13	24.92	11.62	12.38	6.25
Merged-chr1-184700905-1	chr1	184700405	184701405	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11592.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	12.01	2.76	3.7	5.4	5.6	9.65	1.06	2.21	2.5
Merged-chr4-132571343-1	chr4	132570843	132571843	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081211, intron 1 of 1)	intron (NM_001081211, intron 1 of 1)	7276.0	NM_001081211	19204.0	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	50.91	32.72	12.02	60.05	51.32	48.23	26.4	36.7	9.99
Merged-chr9-124079960-1	chr9	124079460	124080460	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22223.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	78.37	86.63	56.42	78.94	79.31	80.38	87.66	89.76	48.71
Merged-chr17-13877554-1	chr17	13877054	13878054	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151731, intron 22 of 33)	intron (NR_151731, intron 22 of 33)	-70819.0	NM_001122977	635895.0	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	7.44	6.91	3.7	8.1	6.06	4.82	3.17	7.07	4.37
Merged-chr6-72426238-1	chr6	72425738	72426738	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019802, intron 7 of 14)	ID_B1|SINE|B4	11930.0	NM_019802	56316.0	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	2.86	2.3	11.1	3.37	1.87	17.68	4.22	6.19	9.99
Merged-chr13-74001307-1	chr13	74000807	74001807	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8112.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	7.44	5.07	11.1	10.12	7.46	6.43	6.34	6.19	6.25
Merged-chr13-94262119-1	chr13	94261619	94262619	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346609, intron 1 of 8)	intron (NM_001346609, intron 1 of 8)	23162.0	NM_029153	107767.0	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	15.45	22.12	20.35	26.99	17.26	16.88	15.84	13.27	11.24
Merged-chr1-132791410-1	chr1	132790910	132791910	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-49613.0	NM_001160317	269116.0	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	2.86	1.38	0.0	2.7	5.13	1.61	3.17	3.54	1.87
Merged-chr5-64626547-1	chr5	64626047	64627047	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15848.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	9.72	6.45	7.4	6.75	2.8	7.23	19.01	9.73	2.5
Merged-chr19-56599021-1	chr19	56598521	56599521	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025811)	TTS (NM_025811)	50760.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	64.07	85.71	55.5	60.05	77.91	60.28	54.92	52.18	28.73
Merged-chr12-100185198-1	chr12	100184698	100185698	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2770.0	NR_045282	100038378.0	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	-	predicted gene 10433	ncRNA	99.54	85.71	61.97	92.44	117.09	81.99	109.84	107.89	58.08
Merged-chr19-28664030-1	chr19	28663530	28664530	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175459, intron 2 of 10)	intron (NM_175459, intron 2 of 10)	-14194.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	6.86	3.23	7.4	4.72	1.4	5.63	5.28	1.77	7.49
Merged-chr12-35288300-1	chr12	35287800	35288800	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD|LINE|L1	-93403.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	6.86	3.69	1.85	7.42	7.93	6.43	0.0	8.4	7.49
Merged-chr7-45519331-1	chr7	45518831	45519831	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290996, intron 5 of 10)	intron (NM_001290996, intron 5 of 10)	4729.0	NM_001290998	56734.0	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	7.44	1.38	9.25	0.0	0.93	4.02	8.45	2.21	5.62
Merged-chrX-50619779-1	chrX	50619279	50620279	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015505, intron 3 of 19)	intron (NR_015505, intron 3 of 19)	15542.0	NR_015505	103012.0	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	9.15	17.05	15.72	14.17	16.79	20.9	14.79	19.01	14.36
Merged-chr10-49051055-1	chr10	49050555	49051555	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	736882.0	NM_001358866	14806.0	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	2.29	3.23	5.55	16.87	5.6	16.88	2.11	8.4	9.37
Merged-chr5-142385461-1	chr5	142384961	142385961	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-16036.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	7.44	3.23	11.1	8.77	7.46	15.27	7.39	6.63	7.49
Merged-chr4-129134941-1	chr4	129134441	129135441	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2058.0	NM_027402	384061.0	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	2.86	2.76	1.85	4.05	2.33	1.61	1.06	1.77	5.0
Merged-chr11-97840671-1	chr11	97840171	97841171	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001080935)	promoter-TSS (NM_001080935)	-109.0	NM_001080935	68127.0	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	4.0	5.53	0.0	8.1	6.53	7.23	48.58	28.74	9.37
Merged-chr10-98796987-1	chr10	98796487	98797487	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-117655.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	11.44	9.22	3.7	10.8	8.86	12.86	12.67	9.29	3.75
Merged-chr1-176248284-1	chr1	176247784	176248784	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357846, intron 1 of 8)	intron (NM_001357846, intron 1 of 8)	27028.0	NM_001357846	319455.0	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	5.15	3.23	3.7	0.67	8.4	1.61	6.34	2.21	5.0
Merged-chr3-122943788-1	chr3	122943288	122944288	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133857, intron 14 of 15)	intron (NM_133857, intron 14 of 15)	19391.0	NM_024461	67704.0	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	3.43	8.75	0.0	6.75	2.8	0.0	5.28	3.1	8.74
Merged-chr5-120906953-2	chr5	120906439	120907439	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145211, intron 1 of 6)	intron (NM_145211, intron 1 of 6)	586.0	NM_145211	246730.0	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	46.91	16.13	16.65	39.13	25.66	32.96	72.88	57.48	31.85
Merged-chr7-81295445-1	chr7	81294945	81295945	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 5 of 21)	intron (NM_008803, intron 5 of 21)	49789.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	10.3	7.83	7.4	18.89	9.8	7.23	10.56	1.77	7.49
Merged-chr7-101559645-2	chr7	101559130	101560130	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033804, intron 1 of 3)	ID4_|SINE|ID	1235.0	NR_033804	11871.0	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	36.61	37.78	50.87	13.49	10.73	16.88	25.35	19.01	17.49
Merged-chr11-106673141-1	chr11	106672641	106673641	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 12 of 14)	intron (NM_001305158, intron 12 of 14)	42140.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	66.36	60.82	73.07	54.65	41.99	55.46	32.74	33.16	46.22
Merged-chr14-70470390-1	chr14	70469890	70470890	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12873.0	NM_145981	105653.0	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	1.14	2.3	4.62	4.05	1.4	1.61	1.06	2.65	3.75
Merged-chr11-97072752-1	chr11	97072252	97073252	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	8984.0	NR_106181	102465893.0		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	1.14	2.3	0.0	2.02	0.93	1.61	1.06	2.65	1.87
Merged-chr4-139616325-1	chr4	139615825	139616825	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205173, intron 8 of 8)	intron (NM_001205173, intron 8 of 8)	-6569.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	94.39	110.13	115.62	64.77	64.38	131.82	114.07	131.32	103.05
Merged-chr11-32231320-1	chr11	32230820	32231820	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104306)	TTS (NR_104306)	4815.0	NM_010822	268395.0	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	5.15	1.38	0.0	8.1	2.8	11.25	3.17	2.65	1.87
Merged-chr10-18917579-1	chr10	18917079	18918079	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72508.0	NM_022032	64058.0	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	7.44	7.37	0.0	12.82	4.67	1.61	14.79	5.31	8.12
Merged-chr6-113075512-2	chr6	113075013	113076013	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027009, intron 1 of 1)	intron (NR_027009, intron 1 of 1)	1731.0	NR_027010	14910.0	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	86.95	117.96	60.12	79.62	86.3	103.69	128.85	107.45	89.31
Merged-chr18-32473248-1	chr18	32472748	32473748	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	86786.0	NM_001048207	71683.0	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	5.72	2.76	1.85	4.05	5.13	0.0	1.06	3.98	2.5
Merged-chr11-62466770-1	chr11	62466270	62467270	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039536, intron 1 of 6)	intron (NM_001039536, intron 1 of 6)	8310.0	NM_001039536	327942.0	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	8.58	4.15	0.0	6.75	2.33	3.22	8.45	3.1	5.62
Merged-chr1-139015300-1	chr1	139014800	139015800	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181347, intron 1 of 20)	intron (NM_181347, intron 1 of 20)	37643.0	NR_108103	78229.0	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	4.0	4.15	0.0	2.7	4.67	1.61	2.11	3.98	6.25
Merged-chr13-63633658-1	chr13	63633158	63634158	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-60198.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	2.29	3.69	3.7	2.02	3.73	4.82	8.45	11.05	1.25
Merged-chr19-11121266-2	chr19	11120762	11121762	+	594.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027058, intron 1 of 6)	G-rich|Low_complexity|Low_complexity	9616.0	NM_027058	69369.0	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	54.35	49.76	32.37	43.86	28.92	78.77	46.47	30.95	68.07
Merged-chr5-122371911-1	chr5	122371411	122372411	+	594.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	52.0	NM_026883	68948.0	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	20.02	15.21	9.25	15.52	12.6	12.86	15.84	11.05	12.49
Merged-chr14-50904096-1	chr14	50903596	50904596	+	594.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10841.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.0	4.61	9.25	1.35	1.87	1.61	8.45	2.21	1.87
Merged-chr7-141363608-2	chr7	141363103	141364103	+	593.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_133191)	TTS (NM_133191)	1507.0	NR_033532	320871.0	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	5.72	2.3	5.55	7.42	3.73	3.22	4.22	2.65	3.75
Merged-chr4-129817959-2	chr4	129817431	129818431	+	593.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2548.0	NM_008974	19244.0	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	76.66	107.36	76.77	76.24	57.38	98.87	67.6	71.63	50.59
Merged-chr11-97243161-1	chr11	97242661	97243661	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	37415.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	86.95	88.93	73.07	80.29	95.63	102.08	99.28	123.81	81.19
Merged-chr4-141762406-1	chr4	141761906	141762906	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172338, exon 15 of 15)	3' UTR (NM_172338, exon 15 of 15)	15731.0	NM_001081408	75986.0	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	20.59	18.43	11.1	48.58	34.06	45.82	2.11	10.61	11.24
Merged-chr19-42156397-1	chr19	42155897	42156897	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	9008.0	NM_183195	277010.0	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	2.29	6.91	0.0	4.05	1.87	9.65	3.17	1.77	5.0
Merged-chr2-165288628-1	chr2	165288128	165289128	+	593.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001252574)	promoter-TSS (NM_001252574)	-790.0	NR_045544	228875.0	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	16.59	17.97	32.37	21.59	13.06	17.68	21.12	17.69	21.86
Merged-chr6-90740862-2	chr6	90740349	90741349	+	593.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356440, intron 1 of 13)	intron (NM_001356440, intron 1 of 13)	-24320.0	NM_001134383	232227.0	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	1.72	2.3	0.92	4.72	3.27	3.22	3.17	2.21	11.87
Merged-chr7-92848454-2	chr7	92847956	92848956	+	593.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	25791.0	NM_001355126	74041.0	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	13.16	13.36	25.9	8.77	6.53	4.82	12.67	13.27	12.49
Merged-chr6-17286591-1	chr6	17286091	17287091	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016900, intron 2 of 2)	intron (NM_016900, intron 2 of 2)	5406.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	6.86	5.99	1.85	12.82	5.13	11.25	13.73	5.31	3.75
Merged-chr10-88678207-1	chr10	88677707	88678707	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011461, intron 4 of 5)	B1_Mur4|SINE|Alu	4816.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	33.18	17.97	19.42	20.24	18.19	15.27	13.73	15.48	18.74
Merged-chr2-103495811-2	chr2	103495305	103496305	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10652.0	NM_009804	12359.0	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	11.44	8.75	8.32	3.37	8.4	4.82	7.39	7.96	6.87
Merged-chr10-67247361-1	chr10	67246861	67247861	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207221, intron 22 of 25)	B3|SINE|B2	37920.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	9.72	3.69	7.4	4.72	2.33	9.65	5.28	2.21	5.0
Merged-chr7-102314287-2	chr7	102313789	102314789	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	intron (NM_009287, intron 1 of 11)	46465.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	15.45	8.75	8.32	6.75	11.2	6.43	7.39	5.75	19.98
Merged-chr2-165901253-2	chr2	165900749	165901749	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-16411.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	53.77	38.25	39.77	41.83	38.72	33.76	104.56	83.13	39.97
Merged-chr11-87736840-2	chr11	87736330	87737330	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009296)	promoter-TSS (NM_009296)	-721.0	NM_001355753	20922.0	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	41.76	50.69	51.8	37.78	50.85	61.89	44.36	56.6	43.72
Merged-chr1-173366168-2	chr1	173365633	173366633	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	1562.0	NM_053199	94332.0	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.57	0.92	0.92	2.7	2.33	1.61	1.06	0.88	5.0
Merged-chr9-107710386-1	chr9	107709886	107710886	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011349)	promoter-TSS (NM_011349)	89.0	NM_011349	20350.0	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	4.58	1.38	3.7	4.05	6.06	3.22	12.67	0.44	3.12
Merged-chr7-118849123-1	chr7	118848623	118849623	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168219, intron 2 of 3)	intron (NM_001168219, intron 2 of 3)	6490.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	11.44	13.36	11.1	12.14	11.2	8.84	16.9	6.19	12.49
Merged-chr16-95658991-2	chr16	95658489	95659489	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43418.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	8.58	3.69	9.25	10.12	11.66	8.04	10.56	5.75	5.62
Merged-chr9-66706010-2	chr9	66705511	66706511	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7675.0	NM_178396	76459.0	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	3.43	6.45	3.7	4.72	4.2	0.0	0.0	0.88	0.0
Merged-chr8-12677731-2	chr8	12677221	12678221	+	593.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5621.0	NM_198031	259279.0	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	2.86	1.84	0.0	2.7	1.87	4.82	0.0	1.77	1.25
Merged-chr4-138980954-2	chr4	138980441	138981441	+	593.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029857, intron 2 of 16)	ORR1F|LTR|ERVL-MaLR	8036.0	NM_029857	77056.0	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	44.05	47.92	22.2	3.37	1.87	1.61	29.57	44.66	12.49
Merged-chr1-23827263-1	chr1	23826763	23827763	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172124, intron 2 of 3)	intron (NM_172124, intron 2 of 3)	65337.0	NM_172124	280645.0	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	1.14	5.99	1.85	0.67	1.4	1.61	3.17	2.21	5.0
Merged-chr4-114863419-1	chr4	114862919	114863919	+	593.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	41699.0	NR_033617	433746.0	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	-	predicted gene 12830	ncRNA	4.0	4.15	3.7	3.37	2.8	0.8	1.06	3.1	3.75
Merged-chr19-32788916-1	chr19	32788416	32789416	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 2 of 8)	intron (NM_008960, intron 2 of 8)	31339.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	60.64	67.74	58.27	45.88	43.39	53.05	55.98	55.27	48.71
Merged-chr3-126667470-3	chr3	126666971	126667971	+	593.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	70520.0	NM_001293665	108058.0	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	4.58	4.61	5.55	6.75	7.46	6.43	7.39	7.96	9.99
Merged-chr2-131492832-1	chr2	131492332	131493332	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177840, intron 1 of 3)	intron (NM_001177840, intron 1 of 3)	970.0	NM_001177838	228608.0	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	69.79	47.0	62.9	38.46	43.39	48.23	81.33	50.41	24.36
Merged-chr2-166116156-1	chr2	166115656	166116656	+	593.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252579, intron 3 of 20)	intron (NM_001252579, intron 3 of 20)	39129.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	2.29	2.3	0.92	1.35	1.87	0.0	2.11	2.65	8.74
Merged-chr1-156465002-1	chr1	156464502	156465502	+	593.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 2 of 15)	intron (NM_009230, intron 2 of 15)	9326.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	34.32	38.25	25.9	49.25	44.78	39.39	12.67	14.59	13.74
Merged-chr1-55809377-1	chr1	55808877	55809877	+	593.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-121864.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	22.31	27.65	14.8	9.45	11.2	8.04	22.18	26.09	26.23
Merged-chr11-67636644-2	chr11	67636086	67637086	+	593.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	40031.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	10.87	5.53	10.17	3.37	1.4	4.82	11.62	4.42	1.25
Merged-chr8-41368260-3	chr8	41367748	41368748	+	593.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	6449.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	15.45	14.28	30.52	22.94	11.66	19.29	48.58	40.68	29.98
Merged-chr3-88592151-3	chr3	88591637	88592637	+	593.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	12529.0	NM_025448	66256.0	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	23.45	30.87	45.32	24.29	36.39	42.6	31.69	20.78	13.12
Merged-chr3-8778900-2	chr3	8778430	8779430	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111892.0	NM_010423	15213.0	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	6.86	1.38	1.85	8.77	6.06	1.61	1.06	4.42	0.0
Merged-chr10-61474495-2	chr10	61473987	61474987	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-1346.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	2.29	3.69	9.25	7.42	1.87	4.82	10.56	4.42	14.99
Merged-chr6-125328455-2	chr6	125327950	125328950	+	593.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7110.0	NM_011324	20276.0	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	3.43	1.84	5.55	4.72	3.73	6.43	3.17	1.33	9.99
Merged-chr17-8214140-1	chr17	8213640	8214640	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21903.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	20.02	19.35	8.32	12.82	8.4	5.63	4.22	0.0	4.37
Merged-chr19-34726479-1	chr19	34725979	34726979	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172838, intron 1 of 6)	L1MB3|LINE|L1	20632.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	9.15	11.06	11.1	8.77	12.6	13.66	6.34	12.82	6.87
Merged-chr10-94991804-1	chr10	94991304	94992304	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47226.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	10.87	4.61	5.55	5.4	8.4	5.63	5.28	4.42	6.25
Merged-chr2-157134700-1	chr2	157134200	157135200	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001139520, intron 1 of 16)	CpG	522.0	NM_001139520	56045.0	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	98.97	146.53	117.47	93.79	84.9	163.17	155.26	216.22	110.54
Merged-chr10-23797139-1	chr10	23796639	23797639	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001358812, exon 1 of 14)	5' UTR (NM_001358812, exon 1 of 14)	153.0	NM_001358812	76306.0	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	5.15	3.23	5.55	4.05	4.2	8.04	5.28	2.65	5.0
Merged-chr14-32939367-1	chr14	32938867	32939867	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001361602, exon 6 of 6)	3' UTR (NM_001361602, exon 6 of 6)	-52015.0	NM_001146021	67580.0	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.57	1.38	7.4	1.35	0.0	4.82	4.22	3.54	1.25
Merged-chrX-108816116-1	chrX	108815616	108816616	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081477, intron 6 of 40)	intron (NM_001081477, intron 6 of 40)	18239.0	NM_001081477	382236.0	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	5.72	3.23	0.0	6.07	4.67	1.61	9.51	7.07	8.74
Merged-chr11-94073486-2	chr11	94073000	94074000	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025430, intron 5 of 25)	B3|SINE|B2	29295.0	NM_001025429	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.0	4.61	1.85	66.8	62.98	51.44	165.82	240.1	44.34
Merged-chr18-37741966-1	chr18	37741466	37742466	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_033578)	promoter-TSS (NM_033578)	-128.0	NM_033578	93703.0	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	0.0	2.3	0.0	2.7	1.4	0.0	2.11	4.86	3.75
Merged-chr4-141731830-1	chr4	141731330	141732330	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-8411.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	9.15	17.05	19.42	32.39	24.72	36.17	11.62	10.17	13.74
Merged-chr17-32073501-1	chr17	32073001	32074001	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17922.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	5.15	2.76	5.55	2.7	0.47	1.61	1.06	2.21	1.25
Merged-chr16-43654586-1	chr16	43654086	43655086	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146325, intron 3 of 3)	intron (NM_001146325, intron 3 of 3)	9598.0	NM_001146325	100043314.0	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	11.44	6.45	1.85	6.07	3.73	4.82	6.34	5.31	2.5
Merged-chr9-69992244-1	chr9	69991744	69992744	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001008238, intron 1 of 9)	intron (NM_001008238, intron 1 of 9)	2778.0	NM_001008238	12175.0	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	35.47	42.39	58.27	31.71	30.79	52.25	39.08	34.49	46.84
Merged-chr14-64624461-1	chr14	64623961	64624961	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28070.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	4.58	5.07	3.7	4.72	1.87	0.8	3.17	0.88	0.0
Merged-chr15-5263234-1	chr15	5262734	5263734	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-19047.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	4.58	4.15	5.55	1.35	1.87	0.0	3.17	0.44	2.5
Merged-chr9-88438228-1	chr9	88437728	88438728	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359958, intron 1 of 28)	intron (NM_001359958, intron 1 of 28)	723.0	NM_001359958	244962.0	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	46.34	54.37	42.55	63.42	53.18	57.87	64.43	49.52	33.1
Merged-chr9-58272483-1	chr9	58271983	58272983	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER89|LTR|ERV1	19319.0	NM_026942	69106.0	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	75.51	71.42	59.2	69.5	43.39	51.44	157.37	164.49	86.81
Merged-chr6-47320105-1	chr6	47319605	47320605	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	75709.0	NM_025771	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	16.59	16.13	7.4	12.82	14.93	8.04	14.79	11.94	7.49
Merged-chr5-99226768-1	chr5	99226268	99227268	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 10 of 13)	intron (NM_181318, intron 10 of 13)	26159.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	14.3	16.59	12.95	8.1	5.13	24.92	13.73	15.03	17.49
Merged-chr4-126227579-2	chr4	126227095	126228095	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24885.0	NM_146153	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	87.52	79.25	63.82	65.45	58.31	71.54	99.28	101.7	79.94
Merged-chr17-33557769-1	chr17	33557269	33558269	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053214, intron 1 of 27)	intron (NM_053214, intron 1 of 27)	2062.0	NM_053214	17916.0	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	23.45	28.57	26.82	31.71	24.72	26.53	44.36	17.69	42.47
Merged-chr10-34205955-1	chr10	34205455	34206455	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	B3A|SINE|B2	1596.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	56.06	70.96	43.47	59.38	49.45	61.09	78.16	91.09	59.33
Merged-chr10-37136220-1	chr10	37135720	37136720	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2706.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	36.04	41.01	52.72	51.28	30.32	48.23	43.3	33.16	23.73
Merged-chr5-92098889-1	chr5	92098389	92099389	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15145.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	62.35	47.92	40.7	62.07	45.72	55.46	71.82	67.65	43.09
Merged-chr19-23520787-1	chr19	23520287	23521287	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L3|LINE|CR1	-72465.0	NM_174857	71738.0	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	4.58	2.3	3.7	2.7	3.27	4.82	4.22	3.1	5.62
Merged-chr17-12036362-1	chr17	12035862	12036862	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016694, intron 10 of 11)	intron (NM_016694, intron 10 of 11)	-82922.0	NM_026644	68262.0	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	1.14	2.3	0.0	1.35	0.93	3.22	2.11	0.88	1.25
Merged-chr11-50205068-1	chr11	50204568	50205568	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290769, intron 5 of 7)	intron (NM_001290769, intron 5 of 7)	5752.0	NM_001290769	18412.0	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	6.29	2.76	11.1	3.37	3.27	3.22	12.67	3.54	5.0
Merged-chr9-119324253-1	chr9	119323753	119324753	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1826.0	NM_133985	108737.0	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	40.62	53.91	33.3	31.71	27.52	32.15	66.54	66.33	62.45
Merged-chr15-12424350-1	chr15	12423850	12424850	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081064, intron 5 of 23)	intron (NM_001081064, intron 5 of 23)	102854.0	NM_025673	66629.0	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	5.72	0.92	1.85	3.37	1.4	4.82	4.22	2.65	2.5
Merged-chr3-101006420-1	chr3	101005920	101006920	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167906, intron 7 of 8)	MTEa|LTR|ERVL-MaLR	23075.0	NM_001167906	630146.0	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	11.44	8.75	1.85	5.4	9.33	14.47	12.67	8.84	8.74
Merged-chr3-108718014-1	chr3	108717514	108718514	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029522, intron 1 of 14)	ORR1A3|LTR|ERVL-MaLR	4285.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	5.15	3.69	2.77	8.1	3.27	7.23	7.39	7.07	1.25
Merged-chr16-12043998-1	chr16	12043498	12044498	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028277, intron 2 of 4)	RLTR16C_MM|LTR|ERVK	59885.0	NM_001174086	72555.0	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	4.58	2.3	0.0	2.02	0.93	5.63	8.45	2.65	4.37
Merged-chr5-35595970-1	chr5	35595470	35596470	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030721, intron 8 of 18)	intron (NM_030721, intron 8 of 18)	-7207.0	NR_045807	74364.0	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	4.58	2.3	5.55	2.7	1.4	1.61	3.17	2.65	1.25
Merged-chr11-86807192-1	chr11	86806692	86807692	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026191, intron 1 of 17)	intron (NM_026191, intron 1 of 17)	468.0	NM_026191	67487.0	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	44.62	35.48	36.07	110.65	81.64	94.85	82.38	81.36	44.97
Merged-chr11-53809572-2	chr11	53809048	53810048	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	intron (NR_033332, intron 3 of 3)	39075.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	28.6	35.94	19.42	20.92	16.79	32.96	49.64	39.8	22.48
Merged-chr1-51459189-1	chr1	51458689	51459689	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	19210.0	NM_001310548	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	4.0	1.84	0.0	0.0	0.47	0.0	2.11	2.65	1.25
Merged-chr17-84936531-1	chr17	84936031	84937031	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20210.0	NM_001159497	19043.0	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	1.14	2.3	1.85	4.72	5.13	9.65	6.34	3.54	6.87
Merged-chr11-106410882-1	chr11	106410382	106411382	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023913, intron 12 of 21)	intron (NM_023913, intron 12 of 21)	-28101.0	NM_010494	15896.0	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	20.02	17.97	8.32	22.94	8.4	9.65	10.56	11.05	5.62
Merged-chr18-10706111-1	chr18	10705611	10706611	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_045379)	promoter-TSS (NR_045379)	585.0	NM_134130	106861.0	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	5.15	4.61	3.7	10.12	5.13	3.22	4.22	1.33	5.0
Merged-chr2-94252171-1	chr2	94251671	94252671	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9228.0	NR_030431	735259.0		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	3.43	1.84	0.0	3.37	3.73	0.0	4.22	2.21	6.25
Merged-chr9-90294207-1	chr9	90293707	90294707	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-23438.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	5.15	7.37	12.95	13.49	7.46	12.86	5.28	7.96	12.49
Merged-chr12-35030151-1	chr12	35029651	35030651	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63C|DNA|hAT-Blackjack	-17038.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	22.31	25.34	14.8	28.34	19.13	20.09	7.39	7.07	6.25
Merged-chr14-63126005-1	chr14	63125505	63126505	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	B4A|SINE|B4	3543.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	180.2	262.19	160.94	180.15	260.78	159.15	318.97	323.67	139.27
Merged-chr18-75371665-1	chr18	75371165	75372165	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 2 of 3)	intron (NM_001042660, intron 2 of 3)	4300.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	19.45	22.58	9.25	20.92	14.93	19.29	35.91	38.91	19.36
Merged-chr2-32708836-1	chr2	32708336	32709336	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130860, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	3948.0	NM_130860	107951.0	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	8.58	5.99	5.55	6.07	1.87	4.82	7.39	2.65	4.37
Merged-chr6-31660991-1	chr6	31660491	31661491	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5140.0	NR_152155	434003.0	Mm.332979	NR_152155	ENSMUSG00000084973	Gm13848	-	predicted gene 13848	ncRNA	4.58	2.3	1.85	5.4	3.73	1.61	2.11	3.54	2.5
Merged-chr15-74641749-1	chr15	74641249	74642249	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5431.0	NM_001177437	69439.0	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	2.86	3.23	5.55	2.7	0.47	1.61	3.17	2.21	2.5
Merged-chr8-14897288-1	chr8	14896788	14897788	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_012000, exon 3 of 3)	3' UTR (NM_012000, exon 3 of 3)	8752.0	NM_012000	26889.0	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	9.15	7.83	5.55	8.1	4.2	9.65	6.34	2.21	7.49
Merged-chr8-11003331-1	chr8	11002831	11003831	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-4519.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	3.43	0.46	5.55	10.8	2.8	9.65	1.06	1.33	0.62
Merged-chr16-90185214-1	chr16	90184714	90185714	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35528.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.0	1.38	8.32	2.02	2.8	0.0	3.17	1.33	1.87
Merged-chr4-141958359-1	chr4	141957859	141958859	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-24633.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	22.88	7.83	3.7	15.52	16.33	0.8	24.29	20.34	14.36
Merged-chr19-3999426-1	chr19	3998926	3999926	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011533)	TTS (NM_011533)	-1154.0	NM_025529	66387.0	Mm.259222	NM_025529	ENSMUSG00000110949	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	20.02	16.13	22.2	30.36	17.73	28.13	12.67	19.01	9.99
Merged-chr7-101419736-2	chr7	101419242	101420242	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1949.0	NM_001008548	207728.0	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	4.58	1.84	7.4	9.45	2.33	3.22	6.34	1.77	1.25
Merged-chr6-125040466-1	chr6	125039966	125040966	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133345, intron 1 of 7)	intron (NM_133345, intron 1 of 7)	618.0	NM_133345	28019.0	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	336.94	303.2	209.96	231.43	210.86	159.95	295.73	417.41	229.2
Merged-chr6-53289374-1	chr6	53288874	53289874	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 1 of 10)	intron (NM_001327821, intron 1 of 10)	2071.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.15	3.23	3.7	3.37	3.73	1.61	4.22	2.21	5.0
Merged-chr1-51657391-2	chr1	51656912	51657912	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-60694.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	12.01	8.29	23.12	4.72	1.87	3.22	21.12	13.27	19.98
Merged-chr15-88867299-1	chr15	88866799	88867799	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5105.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	17.73	11.06	8.32	8.1	8.4	20.9	9.51	8.4	3.12
Merged-chr9-66594327-1	chr9	66593827	66594827	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1212.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	38.9	38.25	36.07	40.48	29.86	56.27	40.14	40.68	47.46
Merged-chr2-102852236-1	chr2	102851736	102852736	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009851, intron 5 of 18)	intron (NM_009851, intron 5 of 18)	49429.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.58	4.61	4.62	8.1	8.4	8.84	5.28	2.65	9.99
Merged-chr2-122150093-1	chr2	122149593	122150593	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009735, intron 1 of 3)	intron (NM_009735, intron 1 of 3)	2406.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	67.5	53.45	40.7	45.21	37.32	32.96	83.44	69.86	43.72
Merged-chr8-36533534-1	chr8	36533034	36534034	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44343.0	NM_176952	319582.0	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L|Trmt9b	RIKEN cDNA 6430573F11 gene	protein-coding	6.86	8.75	3.7	15.52	12.13	9.65	7.39	2.21	3.75
Merged-chr6-140682963-1	chr6	140682463	140683463	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	56078.0	NM_001309436	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	9.15	4.61	3.7	8.77	6.06	1.61	8.45	4.42	5.0
Merged-chr15-99018220-1	chr15	99017720	99018720	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11671.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	6.86	7.83	2.77	18.89	11.2	11.25	11.62	8.84	6.25
Merged-chr1-61643407-1	chr1	61642907	61643907	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	4583.0	NM_001081050	72823.0	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	5.15	1.84	1.85	2.02	4.67	2.41	2.11	3.98	6.25
Merged-chr5-122285209-1	chr5	122284709	122285709	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177242, intron 1 of 5)	CpG	811.0	NM_177242	320717.0	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	90.38	64.05	49.95	87.04	56.91	40.99	92.94	74.28	61.2
Merged-chrX-106047072-1	chrX	106046572	106047572	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx8b|LINE|L1	19848.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	56.63	64.05	35.15	61.4	42.45	39.39	60.2	45.99	33.1
Merged-chr9-21598364-1	chr9	21597864	21598864	+	593.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-5533.0	NM_138303	74766.0	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	2.29	5.07	0.0	4.72	1.87	6.43	2.11	3.1	0.0
Merged-chr11-120938161-1	chr11	120937661	120938661	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5289.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	9.72	5.07	0.92	12.82	3.27	12.06	6.34	7.96	8.74
Merged-chr12-95747536-1	chr12	95747036	95748036	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	55310.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	21.74	28.11	12.02	29.01	27.99	37.78	51.75	45.1	30.6
Merged-chr10-18430361-1	chr10	18429861	18430861	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	22686.0	NM_173390	215819.0	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	8.01	5.99	5.55	3.37	7.0	4.02	7.39	1.33	2.5
Merged-chr1-120327906-1	chr1	120327406	120328406	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12676.0	NM_207233	226359.0	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	5.15	2.76	1.85	2.7	1.4	0.8	3.17	1.33	0.62
Merged-chr2-130781290-1	chr2	130780790	130781790	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029432, intron 12 of 36)	MLTR12|LTR|ERV1	22811.0	NR_024097	100043766.0	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	1.14	1.84	1.85	31.71	23.33	14.47	3.17	1.77	1.25
Merged-chr8-83593587-1	chr8	83593087	83594087	+	593.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134118, intron 1 of 12)	intron (NM_134118, intron 1 of 12)	904.0	NM_027179	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	27.46	41.01	25.9	37.11	31.26	20.9	44.36	43.77	18.74
Merged-chr16-4736437-1	chr16	4735937	4736937	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	-5176.0	NM_010443	15369.0	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	16.02	10.14	8.32	11.47	18.66	26.53	20.07	12.82	12.49
Merged-chr19-34483782-1	chr19	34483282	34484282	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8647.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	5.15	2.76	1.85	2.7	0.93	4.82	2.11	1.77	1.25
Merged-chr14-74990676-2	chr14	74990185	74991185	+	593.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	15599.0	NR_046078	100043169.0	Mm.145900	NR_046078	ENSMUSG00000115019	Gm4278	-	predicted gene 4278	ncRNA	2.29	6.45	5.55	4.05	4.2	1.61	4.22	0.44	0.0
Merged-chr17-30112685-2	chr17	30112189	30113189	+	592.900024	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356265, intron 2 of 5)	B4|SINE|B4	107650.0	NM_001356265	21769.0	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	12.59	14.28	14.8	12.82	5.13	7.23	21.12	11.05	5.0
Merged-chr6-89639261-2	chr6	89638762	89639762	+	592.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4726.0	NM_001178060	232223.0	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TGR|TR2	thioredoxin reductase 3	protein-coding	4.58	1.38	3.7	3.37	1.4	0.8	5.28	3.98	2.5
Merged-chr3-116107024-1	chr3	116106524	116107524	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22664.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	21.74	16.59	31.45	24.29	14.0	17.68	43.3	41.56	24.36
Merged-chr7-121289195-1	chr7	121288695	121289695	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-103101.0	NM_001081327	195646.0	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	2.86	1.38	0.0	7.42	1.87	1.61	2.11	3.98	5.0
Merged-chr16-23182142-1	chr16	23181642	23182642	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155420, intron 1 of 2)	G-rich|Low_complexity|Low_complexity	6862.0	NR_155420	105246089.0	Mm.390905	NR_155420		C730014E05Rik	-	RIKEN cDNA C730014E05 gene	ncRNA	6.86	8.29	4.62	23.62	6.53	20.9	7.39	6.63	9.37
Merged-chr9-44134660-3	chr9	44134157	44135157	+	592.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	-1.0	NM_023061	84004.0	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	12.59	2.76	1.85	6.75	0.0	3.22	3.17	3.54	0.62
Merged-chr19-36538721-1	chr19	36538221	36539221	+	592.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15918.0	NM_001163471	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	4.0	6.45	3.7	1.35	2.33	3.22	1.06	6.19	2.5
Merged-chr2-45241268-2	chr2	45240778	45241778	+	592.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-123836.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	98.39	179.71	86.02	85.01	55.51	70.73	69.71	63.23	64.33
Merged-chr11-70151257-2	chr11	70150764	70151764	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-15359.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	2.86	5.53	3.7	6.07	3.27	0.0	8.45	0.44	2.5
Merged-chr13-118763239-1	chr13	118762739	118763739	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008002, intron 1 of 2)	intron (NM_008002, intron 1 of 2)	48540.0	NM_008002	14165.0	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	4.58	0.0	7.4	3.37	4.67	2.41	1.06	4.42	3.75
Merged-chr1-39001331-1	chr1	39000831	39001831	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13517.0	NM_026850	68833.0	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	5.15	0.46	0.0	4.72	1.87	0.0	1.06	2.65	0.0
Merged-chr1-135396404-1	chr1	135395904	135396904	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357578, intron 15 of 24)	intron (NM_001357578, intron 15 of 24)	-21341.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	4.0	5.53	12.95	6.07	2.8	4.82	4.22	5.75	0.0
Merged-chr11-46128727-2	chr11	46128245	46129245	+	592.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001311209, intron 1 of 11)	intron (NM_001311209, intron 1 of 11)	841.0	NM_001311209	11492.0	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	5.15	6.91	1.85	5.4	4.67	0.0	7.39	2.65	5.62
Merged-chr3-79143766-1	chr3	79143266	79144266	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099624, intron 1 of 23)	intron (NM_001099624, intron 1 of 23)	1121.0	NM_001310536	76089.0	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	10.87	7.83	9.25	10.8	10.73	4.02	13.73	9.73	3.75
Merged-chr17-47842890-1	chr17	47842390	47843390	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8199.0	NM_001109973	17240.0	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	6.86	5.07	7.4	8.1	7.46	14.47	16.9	12.82	4.37
Merged-chr1-172476114-2	chr1	172475594	172476594	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029612, intron 1 of 3)	intron (NM_029612, intron 1 of 3)	734.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	25.74	22.12	14.8	18.22	12.13	27.33	22.18	38.03	11.24
Merged-chr7-67246961-1	chr7	67246461	67247461	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 8 of 11)	L1MCa|LINE|L1	24345.0	NM_001191051	75099.0	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	24.03	16.13	22.2	14.84	17.73	21.7	26.4	14.59	27.48
Merged-chr16-90280694-2	chr16	90280178	90281178	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346799, intron 1 of 19)	intron (NM_001346799, intron 1 of 19)	3808.0	NM_001346799	224432.0	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	28.03	25.34	24.05	29.01	13.53	20.09	23.24	31.84	11.24
Merged-chr14-31781762-2	chr14	31781243	31782243	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	48672.0	NM_001024604	105522.0	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	7.44	1.84	1.85	3.37	4.67	4.82	3.17	7.07	3.75
Merged-chr2-5768065-1	chr2	5767565	5768565	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53303.0	NM_177343	227541.0	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	21.74	20.27	16.65	37.78	21.46	35.37	33.8	25.65	35.6
Merged-chr6-124702924-2	chr6	124702410	124703410	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149320, intron 8 of 11)	intron (NR_149320, intron 8 of 11)	9268.0	NM_013536	14791.0	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	8.58	0.46	1.85	4.05	3.27	1.61	4.22	0.88	0.0
Merged-chr19-16178806-1	chr19	16178306	16179306	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	14708.0	NR_033228	595139.0	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	12.01	7.37	8.32	9.45	9.33	10.45	6.34	7.07	11.24
Merged-chr13-17780107-2	chr13	17779608	17780608	+	592.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027118, intron 1 of 13)	ORR1E|LTR|ERVL-MaLR	24989.0	NM_001081058	69562.0	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	9.15	2.76	2.77	8.1	6.53	7.23	4.22	4.86	1.87
Merged-chr16-15889044-2	chr16	15888579	15889579	+	592.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_146068)	TTS (NM_146068)	1793.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	46.34	72.8	37.92	30.36	48.05	39.39	62.31	74.73	48.71
Merged-chr8-106388000-1	chr8	106387500	106388500	+	592.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27339.0	NM_011764	22751.0	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	5.15	0.46	5.55	8.1	6.53	6.43	4.22	2.65	5.62
Merged-chr6-4988784-1	chr6	4988284	4989284	+	592.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	85464.0	NM_181595	243725.0	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.58	8.29	7.4	12.82	6.06	4.82	6.34	6.63	5.62
Merged-chr2-164360448-2	chr2	164359944	164360944	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3937.0	NM_011414	20568.0	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	ALP	secretory leukocyte peptidase inhibitor	protein-coding	42.9	21.2	15.72	40.48	27.06	11.25	31.69	24.32	4.37
Merged-chr11-116533181-2	chr11	116532707	116533707	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_025367)	promoter-TSS (NM_025367)	-31.0	NM_025367	20698.0	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	2.29	2.76	0.92	10.8	2.8	8.04	4.22	2.21	0.0
Merged-chr8-35808400-2	chr8	35807891	35808891	+	592.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	18168.0	NM_027998	71908.0	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.0	2.3	3.7	4.05	2.33	1.61	1.06	3.54	3.12
Merged-chr19-33178624-1	chr19	33178124	33179124	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146342, intron 3 of 4)	RMER13B|LTR|ERVK	21512.0	NR_039552	100628575.0		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.57	4.61	5.55	4.72	4.67	4.82	2.11	0.44	6.25
Merged-chr7-110908813-1	chr7	110908313	110909313	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 10 of 20)	HAL1b|LINE|L1	3828.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	12.59	14.75	12.95	14.17	9.8	19.29	19.01	20.78	16.24
Merged-chr3-37617171-1	chr3	37616671	37617671	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3258.0	NR_130161	75947.0	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	13.16	29.49	25.9	16.87	20.06	24.92	11.62	11.5	18.11
Merged-chr13-76255328-1	chr13	76254828	76255828	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129633.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	3.43	10.14	12.95	4.72	3.27	4.02	2.11	1.77	3.75
Merged-chr4-43460202-1	chr4	43459702	43460702	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER4B|LTR|ERVK	-5576.0	NM_007654	12517.0	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	59.49	17.97	41.62	39.13	23.79	53.05	32.74	27.86	41.84
Merged-chr8-120300987-3	chr8	120300461	120301461	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72731.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	8.01	1.84	0.0	6.07	1.4	0.0	3.17	1.33	2.5
Merged-chr15-82048611-1	chr15	82048111	82049111	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-1013.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	17.73	8.75	9.25	7.42	8.4	8.84	10.56	2.65	3.12
Merged-chr8-122985524-1	chr8	122985024	122986024	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	56760.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	12.59	18.89	22.2	32.39	25.19	14.47	15.84	12.38	13.12
Merged-chr16-44812825-1	chr16	44812325	44813325	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7903.0	NM_207244	239849.0	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	107.55	135.01	47.17	68.82	96.1	45.01	98.23	114.96	35.6
Merged-chr16-91408064-1	chr16	91407564	91408564	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	1829.0	NM_008349	16155.0	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	110.98	108.75	84.17	112.68	80.71	83.59	173.21	153.87	68.7
Merged-chr13-23747161-1	chr13	23746661	23747661	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175664)	TTS (NM_175664)	427.0	NM_175664	319178.0	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	109.83	128.1	99.89	124.82	129.22	93.24	96.11	196.76	92.43
Merged-chr5-76833115-1	chr5	76832615	76833615	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7484.0	NM_001163793	320827.0	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	5.15	2.76	0.0	11.47	4.2	1.61	7.39	6.63	0.0
Merged-chr13-12413034-1	chr13	12412534	12413534	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144835, intron 17 of 44)	intron (NM_144835, intron 17 of 44)	17659.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	104.69	121.65	66.6	122.12	126.42	121.37	119.35	114.96	79.94
Merged-chr9-40264086-1	chr9	40263586	40264586	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5130.0	NM_001083917	235281.0	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	4.0	1.38	0.0	4.05	6.06	0.0	5.28	3.1	6.25
Merged-chr4-59547729-1	chr4	59547229	59548229	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144904, intron 1 of 14)	intron (NM_144904, intron 1 of 14)	1635.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	83.52	123.95	68.45	81.64	85.84	87.61	96.11	133.53	84.94
Merged-chrX-35895372-1	chrX	35894872	35895872	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009947, intron 1 of 52)	intron (NM_001009947, intron 1 of 52)	6540.0	NM_001009947	75974.0	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	6.86	11.52	12.95	10.12	4.67	4.82	3.17	6.19	17.49
Merged-chr5-77140321-1	chr5	77139821	77140821	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25198.0	NM_175606	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	4.58	3.69	0.0	2.02	1.87	0.0	7.39	3.54	3.75
Merged-chr4-99061676-1	chr4	99061176	99062176	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 11 of 47)	intron (NM_026082, intron 11 of 47)	30722.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	14.3	10.14	12.95	13.49	4.67	12.06	19.01	13.71	14.36
Merged-chr2-117194430-1	chr2	117193930	117194930	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9303.0	NR_030440	732489.0		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	16.02	14.75	18.5	12.14	5.6	11.25	10.56	5.75	8.74
Merged-chr13-95950799-1	chr13	95950299	95951299	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58877.0	NM_027711	544963.0	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	24.6	12.44	3.7	12.82	12.13	13.66	26.4	27.41	16.24
Merged-chr11-80038274-1	chr11	80037774	80038774	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42717.0	NM_001277106	54394.0	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	13.16	11.98	7.4	14.84	7.0	9.65	10.56	3.1	8.12
Merged-chr9-70081214-1	chr9	70080714	70081714	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43126.0	NM_028087	72077.0	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	6.29	6.45	7.4	4.72	5.13	0.0	2.11	6.63	6.25
Merged-chr10-61273284-1	chr10	61272784	61273784	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081127, exon 1 of 22)	5' UTR (NM_001081127, exon 1 of 22)	154.0	NM_001081127	237360.0	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	3.43	1.38	9.25	2.7	2.8	6.43	7.39	0.88	2.5
Merged-chr1-152922136-1	chr1	152921636	152922636	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19490.0	NM_001005507	226517.0	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.86	6.45	0.92	8.77	4.67	6.43	7.39	1.77	3.75
Merged-chr15-64197159-1	chr15	64196659	64197659	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 4 of 28)	intron (NM_001276461, intron 4 of 28)	115514.0	NM_001276462	13196.0	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	53.2	64.97	37.0	37.11	30.79	17.68	49.64	55.27	38.72
Merged-chr14-50353337-1	chr14	50352837	50353837	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-4577.0	NM_205819	239081.0	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	5.15	5.07	2.77	6.75	1.4	3.22	3.17	4.42	5.62
Merged-chr5-65326818-2	chr5	65326318	65327318	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011258, intron 1 of 24)	intron (NM_011258, intron 1 of 24)	8821.0	NM_011258	19687.0	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	69.22	55.75	44.4	58.7	50.38	28.13	108.79	114.96	34.35
Merged-chr6-8655670-1	chr6	8655170	8656170	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010492, intron 10 of 13)	intron (NM_010492, intron 10 of 13)	102788.0	NM_001252266	15893.0	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.57	1.38	1.85	7.42	4.2	10.45	4.22	2.65	10.62
Merged-chr8-80963262-1	chr8	80962762	80963762	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51644.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	3.43	5.07	7.4	7.42	2.8	3.22	5.28	6.63	10.62
Merged-chr17-64592949-1	chr17	64592449	64593449	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8700.0	NM_008549	17158.0	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	73.79	63.59	48.1	64.1	51.32	86.01	51.75	35.82	51.21
Merged-chr4-128820673-1	chr4	128820173	128821173	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Zaphod3|DNA|hAT-Tip100	-14561.0	NM_001081098	230761.0	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	8.01	4.61	3.7	3.37	1.87	5.63	4.22	3.98	5.0
Merged-chr15-88865030-2	chr15	88864497	88865497	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145478, exon 6 of 6)	3' UTR (NM_145478, exon 6 of 6)	2803.0	NM_145478	223775.0	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	40.04	20.74	12.02	29.69	20.53	16.08	12.67	12.38	12.49
Merged-chr1-58677714-1	chr1	58677214	58678214	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347056, intron 5 of 13)	B2_Mm2|SINE|B2	14731.0	NM_001347056	108812.0	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 chromosome region 12	protein-coding	1.14	4.61	4.62	2.7	2.8	0.0	4.22	3.1	1.87
Merged-chr13-60708327-1	chr13	60707827	60708827	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134062, intron 3 of 26)	intron (NM_134062, intron 3 of 26)	78037.0	NM_199148	218275.0	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	36.61	23.5	28.67	22.94	16.79	13.66	7.39	4.86	14.36
Merged-chr18-69675513-1	chr18	69675013	69676013	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 15 of 19)	intron (NM_001361128, intron 15 of 19)	-250046.0	NM_201362	381175.0	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	2.86	2.76	0.0	5.4	0.93	0.0	5.28	0.44	1.87
Merged-chr8-128204980-1	chr8	128204480	128205480	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	73245.0	NR_105822	102465212.0		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.72	0.92	11.1	4.05	3.27	6.43	3.17	2.65	0.0
Merged-chr13-60488428-1	chr13	60487928	60488928	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-113519.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	26.31	18.43	15.72	4.05	1.4	0.0	11.62	14.15	15.61
Merged-chr6-31104744-1	chr6	31104244	31105244	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-41651.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	8.01	4.61	7.4	9.45	4.2	7.23	12.67	5.31	9.37
Merged-chr6-114258129-1	chr6	114257629	114258629	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-24506.0	NM_178703	232333.0	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	127.0	138.7	70.3	119.43	76.51	54.66	82.38	102.14	64.33
Merged-chr2-45216699-1	chr2	45216199	45217199	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99257.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	13.73	17.51	9.25	33.06	21.93	23.31	22.18	18.13	11.24
Merged-chr3-104960775-1	chr3	104960275	104961275	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009520, intron 1 of 4)	intron (NM_009520, intron 1 of 4)	934.0	NM_009520	22414.0	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	3.43	3.23	1.85	2.7	0.47	3.22	2.11	0.88	6.87
Merged-chr9-65909716-1	chr9	65909216	65910216	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019797)	promoter-TSS (NM_019797)	706.0	NM_173185	214897.0	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	53.77	39.17	28.67	41.16	16.33	49.03	40.14	27.41	30.6
Merged-chr19-47755833-1	chr19	47755333	47756333	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_106165)	promoter-TSS (NR_106165)	-676.0	NR_106165	102465883.0		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	6.86	5.07	20.35	15.52	14.93	16.88	7.39	7.96	5.62
Merged-chr12-102284798-1	chr12	102284298	102285298	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161365, intron 1 of 9)	intron (NM_001161365, intron 1 of 9)	1157.0	NM_001161365	217835.0	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	12.59	5.53	10.17	12.82	7.46	8.04	11.62	2.21	6.87
Merged-chr9-103302837-2	chr9	103302345	103303345	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-2482.0	NM_176979	235559.0	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	5.15	3.23	2.77	9.45	3.73	1.61	5.28	7.07	5.0
Merged-chr18-58033496-1	chr18	58032996	58033996	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010181, intron 55 of 64)	ORR1G|LTR|ERVL-MaLR	154818.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.86	2.3	1.85	0.67	0.93	1.61	2.11	1.33	1.25
Merged-chr5-130613773-1	chr5	130613273	130614273	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021371, intron 2 of 5)	MTD|LTR|ERVL-MaLR	164981.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	1.14	5.53	5.55	4.05	3.27	0.0	7.39	1.77	19.98
Merged-chr11-3964467-1	chr11	3963967	3964967	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022889, intron 1 of 14)	intron (NM_022889, intron 1 of 14)	492.0	NM_022889	64934.0	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	155.03	171.87	125.79	165.98	155.35	162.37	178.5	195.88	106.17
Merged-chr6-3488328-2	chr6	3487819	3488819	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178899, intron 1 of 9)	intron (NM_178899, intron 1 of 9)	6179.0	NM_178899	101202.0	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	16.02	18.89	6.47	12.82	5.6	23.31	9.51	8.4	12.49
Merged-chr15-53329432-1	chr15	53328932	53329932	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	MTD|LTR|ERVL-MaLR	16751.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	3.43	4.15	0.0	5.4	2.8	1.61	4.22	3.1	7.49
Merged-chr8-72218928-1	chr8	72218428	72219428	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026455)	promoter-TSS (NM_026455)	-802.0	NM_026455	67922.0	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	12.01	11.98	9.25	31.04	22.86	15.27	16.9	10.61	4.37
Merged-chr14-46924733-1	chr14	46924233	46925233	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	30195.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	10.87	15.21	6.47	13.49	23.79	24.11	23.24	42.89	14.99
Merged-chr3-133543691-1	chr3	133543191	133544191	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	699.0	NM_001040400	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	188.21	212.42	118.39	205.79	230.46	153.52	262.99	270.16	163.0
Merged-chr10-9676511-1	chr10	9676011	9677011	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1303.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	6.29	2.76	1.85	8.1	4.2	3.22	2.11	3.54	8.74
Merged-chr1-52952935-1	chr1	52952435	52953435	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144953)	promoter-TSS (NM_144953)	-95.0	NM_144953	67080.0	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	4.58	3.69	0.0	3.37	1.87	1.61	1.06	1.33	5.0
Merged-chr17-57183042-1	chr17	57182542	57183542	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11139.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	2.29	1.84	9.25	2.7	4.2	2.41	8.45	4.42	2.5
Merged-chrX-142231599-1	chrX	142231099	142232099	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161430, intron 3 of 4)	intron (NM_001161430, intron 3 of 4)	2896.0	NM_001290533	237082.0	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	2.29	10.6	7.4	3.37	0.0	1.61	7.39	8.84	6.25
Merged-chr1-40415669-1	chr1	40415169	40416169	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13901.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	1.14	5.53	7.4	3.37	5.13	1.61	2.11	3.54	6.25
Merged-chr10-16658716-1	chr10	16658216	16659216	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	437066.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	5.15	4.15	2.77	2.02	3.73	0.8	4.22	3.1	8.74
Merged-chr12-104835008-1	chr12	104834508	104835508	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040682, intron 1 of 12)	intron (NM_001040682, intron 1 of 12)	30068.0	NR_104436	94040.0	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	3.43	3.69	9.25	2.02	1.87	1.61	4.22	6.63	8.74
Merged-chr8-84743290-1	chr8	84742790	84743790	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 2 of 9)	intron (NM_001081982, intron 2 of 9)	31079.0	NM_001081981	18032.0	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	5.72	8.75	12.02	12.14	4.67	7.23	9.51	11.94	8.74
Merged-chr1-191202085-1	chr1	191201585	191202585	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18752.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	106.4	76.95	29.6	126.17	109.16	73.95	67.6	82.69	24.36
Merged-chr11-106499179-1	chr11	106498679	106499679	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1812.0	NR_030703	100216537.0		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	29.17	23.96	23.12	31.71	21.93	31.35	34.85	33.16	27.48
Merged-chr6-37430642-1	chr6	37430142	37431142	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178661, intron 1 of 11)	L2|LINE|L2	11506.0	NM_178661	208647.0	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	26.31	26.73	17.57	43.86	29.39	19.29	19.01	28.74	19.36
Merged-chr1-131980439-1	chr1	131979939	131980939	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177628, intron 4 of 4)	intron (NM_001177628, intron 4 of 4)	9830.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	26.89	36.86	28.67	27.66	25.66	57.87	24.29	18.13	28.1
Merged-chr14-54783303-1	chr14	54782803	54783803	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1417.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	14.3	8.75	22.2	15.52	11.2	11.25	20.07	17.24	12.49
Merged-chr14-25496824-1	chr14	25496324	25497324	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	-37615.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	8.01	2.3	0.0	9.45	5.6	8.04	2.11	0.88	5.0
Merged-chr6-13838030-1	chr6	13837530	13838530	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001330666, exon 3 of 4)	5' UTR (NM_001330666, exon 3 of 4)	1912.0	NM_001330666	64450.0	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	4.58	4.15	7.4	6.07	4.67	5.63	3.17	3.98	3.12
Merged-chr19-42017387-1	chr19	42016887	42017887	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	-18651.0	NM_020033	56642.0	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	58.35	47.46	110.07	58.7	62.05	65.91	58.09	30.07	53.08
Merged-chr7-145282320-1	chr7	145281820	145282820	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132643, intron 1 of 22)	intron (NR_132643, intron 1 of 22)	1691.0	NR_132644	233979.0	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	26.31	28.57	24.97	33.74	38.25	43.4	48.58	31.39	9.99
Merged-chr8-25746001-1	chr8	25745501	25746501	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361595, intron 7 of 15)	RLTR31D_MM|LTR|ERVK	8279.0	NM_028102	72108.0	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	9.72	12.44	14.8	15.52	14.93	15.27	6.34	14.59	5.62
Merged-chr9-108336285-1	chr9	108335785	108336785	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016802, intron 5 of 5)	B1_Mus2|SINE|Alu	-2795.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	8.58	15.67	22.2	11.47	14.93	29.74	4.22	16.8	16.24
Merged-chr8-108737341-1	chr8	108736841	108737841	+	592.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	22697.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	2.29	3.69	7.4	7.42	0.47	0.8	8.45	0.88	4.37
Merged-chr3-109477023-1	chr3	109476523	109477523	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	-96984.0	NM_146139	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	15.45	13.82	9.25	24.29	21.93	13.66	0.0	3.98	2.5
Merged-chr11-75450842-1	chr11	75450342	75451342	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138950, exon 1 of 10)	exon (NM_138950, exon 1 of 10)	3875.0	NM_138950	192652.0	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	4.58	4.15	15.72	8.1	4.67	7.23	4.22	2.65	5.0
Merged-chr8-106687676-1	chr8	106687176	106688176	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173037, intron 1 of 17)	intron (NM_173037, intron 1 of 17)	4608.0	NM_173037	272538.0	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	3.43	0.46	1.85	4.05	0.93	2.41	7.39	1.33	3.12
Merged-chr4-98922362-1	chr4	98921862	98922862	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1448.0	NM_001301414	230484.0	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	29.75	34.1	36.07	24.29	34.52	40.99	41.19	48.64	37.47
Merged-chr16-30727716-1	chr16	30727216	30728216	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	127993.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	2.29	4.61	2.77	3.37	2.8	4.82	5.28	2.21	3.75
Merged-chr9-58226064-1	chr9	58225564	58226564	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	4914.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	20.02	14.28	16.65	13.49	9.8	16.08	10.56	1.33	8.74
Merged-chr1-16191360-1	chr1	16190860	16191860	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85478.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	1.72	3.69	1.85	2.7	3.73	4.82	3.17	0.44	0.0
Merged-chr1-71986481-1	chr1	71985981	71986981	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040454, intron 1 of 2)	RLTR28|LTR|ERVL	18714.0	NR_040454	71134.0	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	2.29	0.92	0.0	5.4	0.0	1.61	4.22	7.52	2.5
Merged-chr2-126030340-2	chr2	126029840	126030840	+	592.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029455, intron 11 of 16)	intron (NM_029455, intron 11 of 16)	-4318.0	NM_008008	14178.0	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	20.02	12.44	14.8	12.82	14.46	8.04	13.73	14.15	6.87
Merged-chr12-76367802-1	chr12	76367302	76368302	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028356, intron 1 of 2)	intron (NM_028356, intron 1 of 2)	1662.0	NM_001172104	109929.0	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	5.72	9.22	0.0	6.07	4.2	4.82	6.34	5.31	2.5
Merged-chr15-99234530-1	chr15	99234030	99235030	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010601, intron 10 of 14)	intron (NM_010601, intron 10 of 14)	9554.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	5.72	1.38	3.7	2.7	2.33	1.61	3.17	3.54	3.75
Merged-chr15-77917394-2	chr15	77916896	77917896	+	592.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019913, intron 3 of 3)	intron (NM_019913, intron 3 of 3)	11598.0	NM_019913	56551.0	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	5.15	3.23	0.0	3.37	1.4	1.61	7.39	5.31	0.0
Merged-chr15-12795557-2	chr15	12795063	12796063	+	591.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	29094.0	NM_029998	77877.0	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	1.14	2.76	0.0	3.37	1.87	3.22	0.0	1.33	3.12
Merged-chr14-122112498-2	chr14	122111976	122112976	+	591.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080556, intron 1 of 16)	intron (NM_080556, intron 1 of 16)	5394.0	NM_080556	68059.0	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	16.02	12.44	15.72	11.47	9.33	11.25	8.45	13.27	8.74
Merged-chrX-96019736-3	chrX	96019247	96020247	+	591.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62773.0	NM_152822	76130.0	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	2.29	1.84	6.47	6.07	1.4	3.22	3.17	6.19	9.99
Merged-chr14-54701524-2	chr14	54701005	54702005	+	591.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	10669.0	NM_207131	110794.0	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|C/EBPepsilon|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	1.72	5.99	1.85	3.37	1.87	3.22	3.17	1.77	1.87
Merged-chr17-72902421-1	chr17	72901921	72902921	+	591.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-15884.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	16.02	15.67	14.8	14.17	11.66	18.49	5.28	4.42	1.25
Merged-chr2-167280829-1	chr2	167280329	167281329	+	591.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-40292.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.58	0.92	0.0	2.7	6.06	1.61	5.28	0.44	2.5
Merged-chr3-84480505-1	chr3	84480005	84481005	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033301)	promoter-TSS (NM_001033301)	-66.0	NM_001033301	229474.0	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.57	1.84	1.85	2.7	1.87	0.8	3.17	0.0	4.37
Merged-chr10-11450036-2	chr10	11449486	11450486	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010146, intron 3 of 3)	intron (NM_010146, intron 3 of 3)	106541.0	NM_010146	13853.0	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	1.72	2.76	1.85	2.7	2.33	3.22	1.06	0.44	1.25
Merged-chr14-70076195-2	chr14	70075705	70076705	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1240.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	57.21	27.19	23.12	18.22	15.39	7.23	39.08	33.6	16.24
Merged-chr5-149679521-1	chr5	149679021	149680021	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081204, intron 1 of 14)	intron (NM_001081204, intron 1 of 14)	1264.0	NM_001081204	381694.0	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.57	4.15	5.55	4.72	5.6	6.43	3.17	3.98	2.5
Merged-chr10-67052630-1	chr10	67052130	67053130	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178606, intron 2 of 7)	intron (NM_178606, intron 2 of 7)	44358.0	NM_001204915	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	23.45	17.97	15.72	12.82	9.33	14.47	12.67	6.19	5.62
Merged-chr2-32566920-1	chr2	32566420	32567420	+	591.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153560, intron 10 of 10)	intron (NM_153560, intron 10 of 10)	-3938.0	NM_010073	13481.0	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	8.01	4.15	2.77	4.72	1.4	4.02	5.28	1.77	5.0
Merged-chr1-77331169-1	chr1	77330669	77331669	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	165599.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	8.01	7.37	1.85	2.7	2.8	4.82	0.0	3.98	3.12
Merged-chr8-124573593-1	chr8	124573093	124574093	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2518.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	2.29	3.69	3.7	1.35	1.87	4.82	1.06	1.33	0.0
Merged-chr5-17847105-2	chr5	17846594	17847594	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	2698.0	NM_001159557	12491.0	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 molecule	protein-coding	6.29	6.91	14.8	6.07	8.4	1.61	9.51	14.59	6.25
Merged-chr7-16739685-2	chr7	16739191	16740191	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198613, intron 1 of 4)	intron (NM_198613, intron 1 of 4)	1247.0	NM_198613	232910.0	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	23.45	11.06	24.97	11.47	4.2	20.09	15.84	9.73	14.99
Merged-chr11-59297139-2	chr11	59296634	59297634	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-6383.0	NM_009522	22416.0	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	7.44	5.07	1.85	4.05	4.2	3.22	5.28	1.77	1.25
Merged-chr8-41276025-2	chr8	41275527	41276527	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023662, exon 12 of 38)	exon (NM_023662, exon 12 of 38)	36268.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	14.87	16.59	9.25	12.14	8.86	16.08	19.01	7.96	11.87
Merged-chr4-55489492-1	chr4	55488992	55489992	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42983.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	7.44	7.83	1.85	10.8	15.86	12.86	20.07	16.36	11.87
Merged-chr13-105032299-1	chr13	105031799	105032799	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	22631.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.0	4.15	1.85	6.07	3.27	0.0	1.06	3.54	1.25
Merged-chr16-91866094-2	chr16	91865615	91866615	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110275, intron 26 of 28)	intron (NM_001110275, intron 26 of 28)	65515.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	20.59	22.58	30.52	51.95	28.92	60.28	42.25	30.95	37.47
Merged-chrX-38438609-1	chrX	38438109	38439109	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152733, intron 3 of 9)	intron (NR_152733, intron 3 of 9)	17851.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	7.44	15.21	10.17	16.87	17.26	8.04	7.39	16.8	9.37
Merged-chr17-27026160-2	chr17	27025652	27026652	+	591.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149749, intron 1 of 6)	intron (NR_149749, intron 1 of 6)	2475.0	NM_007523	12018.0	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	100.68	104.14	37.92	79.62	87.24	107.71	87.66	99.93	46.84
Merged-chr18-12169611-1	chr18	12169111	12170111	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029623, intron 2 of 19)	intron (NM_029623, intron 2 of 19)	881.0	NM_029623	76482.0	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1|Rmc1|Wdr98	RIKEN cDNA 3110002H16 gene	protein-coding	28.6	39.17	29.6	30.36	30.32	40.99	43.3	44.66	39.35
Merged-chr12-112802727-2	chr12	112802232	112803232	+	591.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-6243.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	1.14	1.38	9.25	2.7	2.33	3.22	4.22	4.86	1.87
Merged-chr11-64654917-1	chr11	64654417	64655417	+	591.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-218243.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	21.74	23.04	12.02	20.24	21.93	4.02	12.67	15.48	14.99
Merged-chr13-5859848-1	chr13	5859348	5860348	+	591.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1641.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	21.74	17.97	30.52	17.54	8.86	16.08	16.9	15.03	14.99
Merged-chr17-25837213-2	chr17	25836697	25837697	+	591.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144816)	promoter-TSS (NM_144816)	-70.0	NM_144816	214951.0	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid like 1	protein-coding	8.58	5.53	12.95	5.4	2.8	3.22	6.34	0.88	8.12
Merged-chr2-73554004-2	chr2	73553489	73554489	+	591.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-24502.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	70.93	63.13	45.32	81.64	76.51	97.26	67.6	82.24	76.19
Merged-chr10-7810149-3	chr10	7809651	7810651	+	591.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026141, intron 10 of 12)	intron (NM_026141, intron 10 of 12)	17257.0	NM_026141	67418.0	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	6.29	4.15	4.62	6.75	2.33	4.82	12.67	4.42	3.75
Merged-chr10-22186600-2	chr10	22186090	22187090	+	591.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	(CA)n|Simple_repeat|Simple_repeat	12688.0	NM_009018	19370.0	Mm.439724	NM_009018		Raet1c	RAE-1gamma	retinoic acid early transcript gamma	protein-coding	4.0	1.84	0.0	3.37	1.4	6.43	2.11	0.0	0.0
Merged-chr1-138126483-1	chr1	138125983	138126983	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	intron (NM_001268286, intron 2 of 28)	48643.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	22.31	28.57	26.82	36.43	27.06	25.72	32.74	26.97	13.74
Merged-chrX-139871546-1	chrX	139871046	139872046	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029413, exon 1 of 16)	5' UTR (NM_029413, exon 1 of 16)	108.0	NM_029413	75746.0	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	0.57	1.38	3.7	4.05	4.67	0.0	1.06	0.44	0.0
Merged-chr2-93523841-1	chr2	93523341	93524341	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60891.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.0	2.3	1.85	5.4	2.8	1.61	2.11	0.0	5.0
Merged-chr15-8342125-1	chr15	8341625	8342625	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201232, intron 11 of 45)	intron (NM_201232, intron 11 of 45)	102338.0	NM_027707	71175.0	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	NIPBL cohesin loading factor	protein-coding	23.45	19.81	10.17	12.14	13.53	8.04	16.9	15.92	14.99
Merged-chr1-135106067-1	chr1	135105567	135106567	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033409)	promoter-TSS (NM_001033409)	-791.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	1.72	0.92	0.0	2.7	2.8	3.22	1.06	1.77	0.0
Merged-chr10-99393775-1	chr10	99393275	99394275	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	130544.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	14.3	10.6	8.32	14.84	7.93	8.84	19.01	8.84	11.24
Merged-chr10-81415671-1	chr10	81415171	81416171	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_106141)	TTS (NR_106141)	626.0	NR_106141	102465778.0		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	34.9	48.38	33.3	55.33	41.99	40.99	43.3	45.1	16.86
Merged-chr18-37720442-1	chr18	37719942	37720942	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033576)	promoter-TSS (NM_033576)	-112.0	NM_033576	93701.0	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	1.14	5.99	6.47	2.7	2.8	3.22	3.17	1.77	5.62
Merged-chr16-33382627-1	chr16	33382127	33383127	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358570, intron 1 of 8)	B1_Mus1|SINE|Alu	1325.0	NM_001358570	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	19.45	33.18	31.45	22.94	33.59	42.6	43.3	41.12	41.84
Merged-chr4-151806866-1	chr4	151806366	151807366	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195565, intron 3 of 3)	intron (NM_001195565, intron 3 of 3)	54902.0	NM_001081557	100072.0	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.86	4.15	4.62	8.1	5.13	9.65	6.34	3.54	5.0
Merged-chr14-60910336-2	chr14	60909826	60910826	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	125760.0	NR_040642	70478.0	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	12.59	11.52	16.65	11.47	11.2	19.29	23.24	18.57	25.61
Merged-chr3-59207310-1	chr3	59206810	59207810	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028808)	TTS (NM_028808)	3572.0	NM_028808	74191.0	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	149.88	184.77	108.22	143.71	100.3	138.25	136.25	164.04	99.3
Merged-chr5-64224912-1	chr5	64224412	64225412	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019636, intron 2 of 19)	intron (NM_019636, intron 2 of 19)	-5445.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	2.29	2.3	1.85	5.4	3.27	10.45	3.17	2.65	7.49
Merged-chr3-121674327-2	chr3	121673833	121674833	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033814, intron 3 of 5)	intron (NM_001033814, intron 3 of 5)	3570.0	NM_001033814	619318.0	Mm.371258	NM_001033814	ENSMUSG00000074248	4930432M17Rik	-	RIKEN cDNA 4930432M17 gene	protein-coding	5.72	1.38	0.0	2.7	1.4	6.43	2.11	1.77	0.0
Merged-chr14-100968870-1	chr14	100968370	100969370	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	231199.0	NM_029680	76627.0	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	5.15	1.38	0.0	2.7	4.2	4.82	3.17	4.86	1.25
Merged-chr2-181334211-2	chr2	181333697	181334697	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001882, intron 8 of 33)	B3|SINE|B2	13391.0	NR_030710	269400.0	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	4.58	1.38	0.0	3.37	1.4	1.61	6.34	1.77	6.25
Merged-chr7-99044574-1	chr7	99044074	99045074	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 6 of 14)	intron (NM_178635, intron 6 of 14)	96570.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	60.07	53.91	54.57	60.72	51.78	28.94	53.87	47.31	47.46
Merged-chr2-30473036-2	chr2	30472537	30473537	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030244, exon 1 of 1)	exon (NM_030244, exon 1 of 1)	1162.0	NM_030244	72500.0	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	8.01	5.07	7.4	22.94	14.93	24.11	16.9	12.38	20.61
Merged-chr18-84679717-1	chr18	84679217	84680217	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023149, intron 3 of 11)	intron (NM_023149, intron 3 of 11)	2342.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	6.86	8.75	10.17	18.22	5.13	12.06	11.62	11.05	7.49
Merged-chr2-127339540-1	chr2	127339040	127340040	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172539, intron 1 of 8)	intron (NM_172539, intron 1 of 8)	901.0	NM_172539	215095.0	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	4.0	0.92	3.7	6.07	3.27	1.61	2.11	4.42	1.25
Merged-chr14-10392330-1	chr14	10391830	10392830	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 5 of 9)	Lx5|LINE|L1	61128.0	NM_001308286	14198.0	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	1.14	5.53	1.85	2.7	3.27	4.02	4.22	4.86	5.62
Merged-chr2-167823595-2	chr2	167823052	167824052	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108775.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	12.59	7.83	13.87	8.1	4.67	1.61	10.56	10.61	5.62
Merged-chr2-24976734-2	chr2	24976239	24977239	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146251, intron 1 of 34)	intron (NM_146251, intron 1 of 34)	706.0	NM_146251	241274.0	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	261.43	272.78	144.29	271.91	261.24	143.07	272.5	309.52	123.03
Merged-chr17-43338489-1	chr17	43337989	43338989	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	-21942.0	NM_001357332	224792.0	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	1.14	1.84	1.85	2.7	4.2	8.04	2.11	0.44	5.0
Merged-chr11-98796342-1	chr11	98795842	98796842	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001361932, exon 1 of 3)	exon (NM_001361932, exon 1 of 3)	826.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	86.38	68.2	129.49	64.77	66.24	95.65	104.56	93.3	57.46
Merged-chr4-147941481-1	chr4	147940981	147941981	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_029841, exon 1 of 3)	exon (NM_029841, exon 1 of 3)	586.0	NM_029841	77034.0	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	57.78	21.2	54.57	45.21	24.72	72.34	53.87	18.13	28.73
Merged-chr2-31809408-1	chr2	31808908	31809908	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_183424, intron 1 of 1)	intron (NM_183424, intron 1 of 1)	1172.0	NM_183424	227717.0	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	1.14	2.3	1.85	7.42	0.93	1.61	4.22	2.21	2.5
Merged-chr16-22399453-1	chr16	22398953	22399953	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358428, intron 8 of 12)	intron (NM_001358428, intron 8 of 12)	38915.0	NM_001358428	104156.0	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	180.2	180.17	143.37	147.09	119.89	174.42	166.88	197.21	159.25
Merged-chr10-77977001-1	chr10	77976501	77977501	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1649.0	NM_026431	67884.0	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	12.59	12.9	12.95	6.75	5.13	14.47	14.79	12.38	7.49
Merged-chr8-82369867-1	chr8	82369367	82370367	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	32719.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	30.32	35.02	39.77	26.31	34.52	13.66	24.29	21.67	15.61
Merged-chr2-33072685-1	chr2	33072185	33073185	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355201, intron 3 of 29)	intron (NM_001355201, intron 3 of 29)	13772.0	NM_001355202	99326.0	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	19.45	8.29	23.12	15.52	13.06	6.43	16.9	13.71	10.62
Merged-chr15-51683660-1	chr15	51683160	51684160	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	181801.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	2.29	3.23	0.0	6.75	0.47	1.61	6.34	2.65	4.37
Merged-chr3-40526340-1	chr3	40525840	40526840	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-3428.0	NR_040445	100040882.0	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	4.0	13.82	8.32	10.12	5.13	4.02	12.67	12.38	9.99
Merged-chr2-60825925-1	chr2	60825425	60826425	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	55513.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	10.87	18.89	11.1	6.07	7.0	12.06	12.67	6.19	16.24
Merged-chr2-58482008-1	chr2	58481508	58482508	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355048, intron 3 of 10)	intron (NM_001355048, intron 3 of 10)	79402.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	46.34	42.85	31.45	10.8	7.46	18.49	8.45	14.59	8.12
Merged-chr19-41379774-1	chr19	41379274	41380274	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	5296.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	50.34	41.01	36.07	42.51	25.66	59.48	64.43	54.83	29.98
Merged-chr15-86221092-1	chr15	86220592	86221592	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 1 of 12)	MLT1E2|LTR|ERVL-MaLR	6633.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	42.9	43.77	69.37	43.18	39.19	60.28	49.64	43.33	27.48
Merged-chr19-41481285-1	chr19	41480785	41481785	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-43967.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	16.02	11.98	11.1	7.42	9.8	16.08	14.79	7.07	6.25
Merged-chr8-121898643-1	chr8	121898143	121899143	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011404, intron 1 of 9)	intron (NM_011404, intron 1 of 9)	9043.0	NM_011404	20539.0	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	4.58	2.76	1.85	2.02	2.33	1.61	1.06	2.21	3.12
Merged-chr9-106469594-1	chr9	106469094	106470094	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001311150)	TTS (NM_001311150)	-3654.0	NM_001159652	436090.0	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	3.43	1.84	5.55	1.35	1.4	7.23	2.11	2.21	2.5
Merged-chr5-145177886-1	chr5	145177386	145178386	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291249, intron 6 of 7)	intron (NM_001291249, intron 6 of 7)	10673.0	NM_001291248	54188.0	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	69.22	101.83	112.84	74.22	66.24	131.02	99.28	94.62	87.43
Merged-chr6-108667880-1	chr6	108667380	108668380	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011498)	TTS (NM_011498)	-6946.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	3.43	3.69	3.7	6.75	1.4	0.8	2.11	1.77	0.62
Merged-chr16-58454652-1	chr16	58454152	58455152	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356484, intron 9 of 15)	intron (NM_001356484, intron 9 of 15)	46117.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	6.29	2.76	5.55	12.82	3.73	5.63	3.17	0.0	0.0
Merged-chr9-9082825-1	chr9	9082325	9083325	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027823, intron 4 of 22)	LTR16E2|LTR|ERVL	-153463.0	NR_045754	100579151.0	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	1.14	4.15	1.85	1.35	4.67	1.61	2.11	3.54	2.5
Merged-chr8-40926662-1	chr8	40926162	40927162	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	429.0	NM_026840	68797.0	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	2.86	3.23	2.77	4.72	6.06	8.04	17.96	20.34	12.49
Merged-chr14-75835237-1	chr14	75834737	75835737	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9727.0	NR_045294	100043189.0	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	291.75	318.86	208.11	282.71	279.91	222.65	248.2	335.6	168.62
Merged-chr10-61423420-1	chr10	61422920	61423920	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013611, exon 2 of 3)	exon (NM_013611, exon 2 of 3)	5448.0	NM_013611	18119.0	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	14.87	14.28	8.32	20.92	22.39	16.08	25.35	26.09	19.36
Merged-chr8-124959489-1	chr8	124958989	124959989	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10235.0	NM_053207	112405.0	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	6.86	3.23	2.77	7.42	2.8	0.0	3.17	2.21	0.0
Merged-chr5-110636084-1	chr5	110635584	110636584	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17298.0	NM_153570	100608.0	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.0	0.0	2.77	2.02	0.47	0.8	2.11	0.0	3.75
Merged-chr4-136132796-1	chr4	136132296	136133296	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-11026.0	NM_008321	15903.0	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	7.44	5.99	4.62	11.47	3.27	12.86	11.62	6.19	11.24
Merged-chr1-144283977-1	chr1	144283477	144284477	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-34873.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	25.74	27.19	32.37	31.04	31.26	23.31	30.63	17.24	30.6
Merged-chr12-77241023-2	chr12	77240511	77241511	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045554, intron 1 of 11)	(T)n|Simple_repeat|Simple_repeat	2272.0	NR_045554	53618.0	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	7.44	7.37	3.7	4.05	5.13	6.43	5.28	7.52	0.0
Merged-chr19-24965542-1	chr19	24965042	24966042	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-3926.0	NM_146097	226043.0	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	46.34	81.56	42.55	67.47	51.78	36.97	90.83	131.77	48.71
Merged-chr2-172442187-1	chr2	172441687	172442687	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025542, intron 1 of 8)	(T)n|Simple_repeat|Simple_repeat	1609.0	NM_025542	66404.0	Mm.25157	NM_025542	ENSMUSG00000027502	Rtf2	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417|Rtfdc1	replication termination factor 2	protein-coding	4.58	9.22	1.85	14.84	7.93	7.23	8.45	11.94	11.24
Merged-chr14-21756982-2	chr14	21756460	21757460	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359953, intron 1 of 5)	B4A|SINE|B4	5408.0	NM_001359953	67630.0	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	67.5	53.91	38.85	33.06	11.2	29.74	96.11	74.73	59.33
Merged-chr11-53528999-1	chr11	53528499	53529499	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361969, intron 1 of 9)	intron (NM_001361969, intron 1 of 9)	8811.0	NM_001361969	20362.0	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	15.45	13.82	10.17	11.47	7.93	16.08	12.67	13.71	8.74
Merged-chr2-129363283-1	chr2	129362783	129363783	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1ME4b|LINE|L1	-6619.0	NR_015474	329514.0	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047	interleukin 1 beta, opposite strand	ncRNA	12.59	13.82	16.65	5.4	9.33	18.49	4.22	10.17	14.99
Merged-chr11-104317397-1	chr11	104316897	104317897	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285454, intron 6 of 9)	L4_C_Mam|LINE|RTE-X	85961.0	NM_001285454	17762.0	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	4.58	3.23	1.85	5.4	1.4	7.23	1.06	0.88	1.25
Merged-chr12-41033467-1	chr12	41032967	41033967	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 2 of 6)	MLT1F|LTR|ERVL-MaLR	9377.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.15	5.99	11.1	5.4	6.53	4.82	3.17	5.31	7.49
Merged-chr1-144002485-1	chr1	144001985	144002985	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009061, intron 3 of 4)	intron (NM_009061, intron 3 of 4)	1664.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	128.71	146.07	95.27	87.71	107.76	87.61	71.82	103.47	53.71
Merged-chr7-34167018-2	chr7	34166529	34167529	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016682, intron 1 of 16)	B3|SINE|B2	1500.0	NM_016682	50995.0	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	7.44	8.75	7.4	4.72	10.26	3.22	6.34	5.75	9.99
Merged-chr17-50392887-1	chr17	50392387	50393387	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-99267.0	NM_001277863	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	47.48	49.3	46.25	13.49	14.46	16.88	152.09	152.55	57.46
Merged-chr6-124888267-1	chr6	124887767	124888767	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013488)	promoter-TSS (NM_013488)	-67.0	NM_013488	12504.0	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	19.45	21.2	23.12	12.14	15.86	12.06	12.67	6.63	2.5
Merged-chr13-28757948-1	chr13	28757448	28758448	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045053, intron 3 of 8)	intron (NR_045053, intron 3 of 8)	-47075.0	NR_105787	102466635.0		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	6.29	7.83	1.85	16.19	8.4	14.47	2.11	2.21	6.25
Merged-chr11-11684983-1	chr11	11684483	11685483	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301868)	promoter-TSS (NM_001301868)	-942.0	NM_009578	22778.0	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	40.62	22.12	23.12	33.74	27.06	22.51	25.35	9.29	17.49
Merged-chr3-116124396-1	chr3	116123896	116124896	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011693, exon 4 of 9)	exon (NM_011693, exon 4 of 9)	5292.0	NM_011693	22329.0	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	35.47	42.39	22.2	26.99	32.19	46.62	17.96	21.67	28.73
Merged-chr14-73383650-1	chr14	73383150	73384150	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008410, intron 1 of 5)	PB1D10|SINE|Alu	1639.0	NM_008410	16432.0	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	214.52	291.22	86.95	181.5	210.4	143.07	272.5	382.47	89.31
Merged-chr7-81839956-1	chr7	81839456	81840456	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-10525.0	NM_146193	83962.0	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	5.72	5.99	5.55	7.42	5.13	6.43	4.22	2.65	3.75
Merged-chr6-6863715-1	chr6	6863215	6864215	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_002839)	TTS (NR_002839)	381.0	NM_010057	13396.0	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.57	0.0	0.0	0.0	0.47	1.61	2.11	0.44	1.25
Merged-chr14-16479091-1	chr14	16478591	16479591	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001289760, intron 5 of 9)	intron (NM_001289760, intron 5 of 9)	96385.0	NM_011243	218772.0	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	10.3	5.99	9.25	8.77	3.73	3.22	3.17	3.1	1.25
Merged-chr13-94062902-1	chr13	94062402	94063402	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172589, intron 1 of 3)	intron (NM_172589, intron 1 of 3)	5106.0	NM_172589	218454.0	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	3.43	2.76	9.25	5.4	6.06	4.82	7.39	2.65	3.75
Merged-chr3-146109114-1	chr3	146108614	146109614	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-1078.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	10.87	7.83	11.1	14.84	8.4	12.06	3.17	4.42	9.37
Merged-chr9-48835963-1	chr9	48835463	48836463	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033324)	promoter-TSS (NM_001033324)	-18.0	NM_001033324	235320.0	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	8.58	0.0	5.55	2.02	0.47	8.04	2.11	4.86	2.5
Merged-chr9-114822003-1	chr9	114821503	114822503	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	intron (NM_027294, intron 1 of 3)	22149.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	12.01	23.96	5.55	22.94	22.86	16.88	25.35	31.39	11.24
Merged-chr13-37338864-1	chr13	37338364	37339364	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6481.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	24.6	53.91	25.9	37.78	32.19	28.94	35.91	47.75	49.96
Merged-chr6-84315697-1	chr6	84315197	84316197	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108141.0	NR_046063	100038556.0	Mm.387783	NR_046063	ENSMUSG00000107797	Gm10445	-	predicted gene 10445	ncRNA	1.14	2.3	5.55	3.37	2.33	1.61	2.11	0.44	2.5
Merged-chr5-135475629-1	chr5	135475129	135476129	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	MTD|LTR|ERVL-MaLR	69493.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	21.17	35.94	51.8	25.64	27.52	24.11	28.52	33.6	23.73
Merged-chr12-101102861-1	chr12	101102361	101103361	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19159.0	NM_001160214	68734.0	Mm.87077	NM_211355	ENSMUSG00000041846	Ppp4r3a	1110034C04Rik|BC064465|Smek1|mKIAA2010	protein phosphatase 4 regulatory subunit 3A	protein-coding	1.72	2.3	2.77	2.7	6.53	1.61	3.17	1.77	1.25
Merged-chr15-73044705-1	chr15	73044205	73045205	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 3 of 21)	intron (NM_029640, intron 3 of 21)	11107.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.86	0.92	1.85	0.0	1.4	4.82	1.06	2.65	3.75
Merged-chr10-28380438-1	chr10	28379938	28380938	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 6 of 30)	intron (NM_001359356, intron 6 of 30)	-287922.0	NM_001305663	210757.0	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	4.58	5.53	3.7	8.77	5.6	3.22	8.45	2.65	5.0
Merged-chr11-97288909-1	chr11	97288409	97289409	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8333.0	NM_008942	19155.0	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	4.58	0.46	0.92	129.55	76.97	61.09	1.06	0.44	5.0
Merged-chr12-28635323-1	chr12	28634823	28635823	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011300, intron 3 of 6)	intron (NM_011300, intron 3 of 6)	630.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	105.83	135.93	49.95	123.47	183.8	79.58	158.43	118.94	74.32
Merged-chr15-62169808-1	chr15	62169308	62170308	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_003368, intron 4 of 8)	intron (NR_003368, intron 4 of 8)	49643.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	6.86	3.23	5.55	8.77	7.0	6.43	7.39	8.84	3.75
Merged-chr11-51800915-1	chr11	51800415	51801415	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37252.0	NM_025535	66397.0	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	20.02	16.13	12.95	20.92	20.06	20.09	17.96	19.9	9.37
Merged-chr1-153945381-1	chr1	153944881	153945881	+	591.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45452.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.57	2.3	14.8	4.05	3.73	2.41	5.28	3.98	1.25
Merged-chr11-65787676-1	chr11	65787176	65788176	+	591.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316368, intron 1 of 10)	CpG	683.0	NM_009157	26398.0	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	153.88	125.33	114.69	143.04	107.3	118.96	153.15	67.21	79.94
Merged-chr7-45898349-1	chr7	45897849	45898849	+	591.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144801, intron 2 of 7)	intron (NM_144801, intron 2 of 7)	1280.0	NM_144801	70209.0	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	13.16	11.06	16.65	15.52	19.13	22.51	21.12	8.84	13.74
Merged-chr5-124616662-2	chr5	124616166	124617166	+	590.875	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026486, intron 11 of 18)	intron (NM_026486, intron 11 of 18)	-12386.0	NM_011596	21871.0	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	6.29	5.53	2.77	6.75	4.2	1.61	15.84	2.21	8.12
Merged-chr10-44657785-2	chr10	44657236	44658236	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198988.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	87.52	71.42	36.07	127.52	120.36	99.67	100.34	97.72	68.07
Merged-chr1-95355392-2	chr1	95354879	95355879	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	41751.0	NM_026321	67698.0	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	6.86	6.91	1.85	1.35	4.2	3.22	4.22	4.86	2.5
Merged-chr10-99602521-2	chr10	99602004	99603004	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6667.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	1.14	3.23	1.85	2.02	3.27	2.41	4.22	3.1	5.0
Merged-chr3-87227028-2	chr3	87226561	87227561	+	590.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	36463.0	NM_030707	80891.0	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	9.72	6.91	4.62	4.05	4.67	8.04	9.51	7.52	6.25
Merged-chr7-140959358-2	chr7	140958843	140959843	+	590.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3382.0	NM_030694	80876.0	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	6.29	4.15	4.62	6.07	2.8	4.82	6.34	1.77	2.5
Merged-chr8-40986300-1	chr8	40985800	40986800	+	590.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026840, intron 4 of 5)	intron (NM_026840, intron 4 of 5)	-31168.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	3.43	1.84	7.4	2.02	0.93	1.61	5.28	1.77	7.49
Merged-chr2-160359095-1	chr2	160358595	160359595	+	590.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7970.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.58	5.53	9.25	10.12	3.73	16.08	4.22	2.65	3.75
Merged-chr11-11765408-1	chr11	11764908	11765908	+	590.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025597, intron 7 of 7)	intron (NM_001025597, intron 7 of 7)	43554.0	NM_021891	60530.0	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	24.03	15.67	18.5	16.19	14.0	14.47	13.73	9.29	23.73
Merged-chrX-74413536-2	chrX	74413048	74414048	+	590.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008062, intron 5 of 12)	intron (NM_008062, intron 5 of 12)	-11064.0	NM_001161421	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	5.72	2.76	6.47	2.7	3.27	4.82	5.28	1.33	0.0
Merged-chr18-82878082-1	chr18	82877582	82878582	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22185.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	1.14	3.69	0.0	8.77	6.53	0.0	5.28	2.21	7.49
Merged-chr7-16507485-2	chr7	16506992	16507992	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172739, intron 5 of 6)	intron (NM_172739, intron 5 of 6)	-30712.0	NM_008718	18142.0	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	5.15	2.76	3.7	5.4	2.33	1.61	4.22	2.21	7.49
Merged-chr19-56391737-1	chr19	56391237	56392237	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1699.0	NM_001286552	18175.0	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	6.86	5.07	3.7	5.4	7.0	1.61	7.39	4.42	7.49
Merged-chr6-125231276-1	chr6	125230776	125231776	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_015604)	promoter-TSS (NR_015604)	0.0	NR_015604	78668.0	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	141.87	174.64	91.57	143.04	167.94	155.93	143.64	175.98	76.82
Merged-chr14-54576631-2	chr14	54576092	54577092	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_010590, exon 1 of 8)	exon (NM_010590, exon 1 of 8)	1069.0	NM_010590	16475.0	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	8.01	2.76	0.0	2.02	4.67	0.0	8.45	1.77	2.5
Merged-chr5-136971005-1	chr5	136970505	136971505	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021719, intron 1 of 4)	intron (NM_021719, intron 1 of 4)	3136.0	NM_021719	60363.0	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	5.72	2.3	0.0	3.37	2.33	3.22	4.22	0.44	1.25
Merged-chr5-121252793-1	chr5	121252293	121253293	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181421, intron 1 of 75)	intron (NM_181421, intron 1 of 75)	32574.0	NM_181421	269700.0	Mm.184589	NM_181421	ENSMUSG00000042744	Hectd4	A130010L24|AU042671|BC019639|EG545802|Gm15800|mKIAA0614	HECT domain E3 ubiquitin protein ligase 4	protein-coding	44.05	30.41	4.62	22.94	19.59	20.9	26.4	35.37	10.62
Merged-chr1-64909100-1	chr1	64908600	64909600	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 3 of 7)	MER21B|LTR|ERVL	47724.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	9.15	6.91	12.02	10.8	15.39	11.25	6.34	10.17	8.12
Merged-chr10-96080679-1	chr10	96080179	96081179	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	140016.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.43	4.61	0.0	6.75	5.13	1.61	1.06	2.65	6.25
Merged-chr1-58031337-1	chr1	58030837	58031837	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009676, intron 1 of 34)	intron (NM_009676, intron 1 of 34)	1368.0	NM_009676	11761.0	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	2.29	2.3	0.0	2.7	1.87	1.61	1.06	0.88	1.25
Merged-chrX-170676106-2	chrX	170675554	170676554	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308488, intron 5 of 7)	intron (NM_001308488, intron 5 of 7)	3410.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	32.61	35.02	16.65	34.41	20.99	40.99	24.29	34.49	26.23
Merged-chr9-15029241-1	chr9	15028741	15029741	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019482, intron 1 of 4)	intron (NM_019482, intron 1 of 4)	16237.0	NM_019482	55991.0	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	4.0	3.23	1.85	3.37	0.93	0.0	2.11	2.21	5.62
Merged-chr18-66404691-1	chr18	66404191	66405191	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-53913.0	NM_021451	58801.0	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	6.29	1.84	7.4	5.4	2.8	0.0	0.0	1.33	5.0
Merged-chr1-155447472-1	chr1	155446972	155447972	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-30028.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.01	3.23	4.62	1.35	3.73	0.0	2.11	3.54	6.25
Merged-chr17-37029514-1	chr17	37029014	37030014	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6116.0	NM_010814	17441.0	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	31.46	37.78	6.47	26.99	17.26	17.68	21.12	26.53	6.87
Merged-chr16-91010195-2	chr16	91009695	91010695	+	590.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164483, intron 1 of 31)	intron (NM_001164483, intron 1 of 31)	900.0	NM_001045515	104015.0	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	141.3	122.11	69.37	102.56	88.64	103.69	129.91	123.81	108.04
Merged-chr15-33114995-2	chr15	33114491	33115491	+	590.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176073, intron 1 of 7)	intron (NM_176073, intron 1 of 7)	31862.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	10.3	7.83	7.4	10.8	5.13	8.04	10.56	6.63	11.24
Merged-chr9-59767095-2	chr9	59766588	59767588	+	590.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173018, intron 1 of 43)	intron (NM_173018, intron 1 of 43)	15914.0	NM_173018	270163.0	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	34.32	33.18	37.92	33.06	32.19	28.94	50.7	35.82	23.11
Merged-chr9-121840098-1	chr9	121839598	121840598	+	590.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028384)	promoter-TSS (NM_028384)	-637.0	NM_028384	100502861.0	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	18.31	18.43	0.0	4.05	3.73	3.22	13.73	7.07	3.12
Merged-chr15-67321631-3	chr15	67321120	67322120	+	590.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045140, intron 5 of 8)	RLTR24B_MM|LTR|ERV1	94851.0	NR_045140	69334.0	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	3.43	4.61	5.55	5.4	5.13	6.43	4.22	2.21	2.5
Merged-chr16-57383794-3	chr16	57383317	57384317	+	590.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	30540.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	7.44	9.22	9.25	8.77	4.2	7.23	9.51	9.29	7.49
Merged-chr7-92743559-2	chr7	92743059	92744059	+	590.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	1845.0	NM_029494	75985.0	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	2.29	2.3	0.0	2.7	1.87	2.41	4.22	0.88	0.0
Merged-chr6-30326212-2	chr6	30325709	30326709	+	590.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21670.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	2.86	1.84	1.85	3.37	3.73	7.23	6.34	2.65	11.24
Merged-chr11-114636447-2	chr11	114635944	114636944	+	590.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32099.0	NM_023372	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	5.15	0.92	3.7	2.7	0.0	1.61	1.06	2.65	0.0
Merged-chr10-52376656-2	chr10	52376145	52377145	+	590.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053187, intron 1 of 7)	intron (NM_053187, intron 1 of 7)	5479.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	15.45	11.52	23.12	5.4	7.93	10.45	10.56	10.17	5.0
Merged-chr9-55252256-2	chr9	55251725	55252725	+	590.083374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_032002, intron 3 of 7)	B2_Mm2|SINE|B2	31400.0	NM_032002	83961.0	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	9.72	8.75	7.4	13.49	15.39	20.09	4.22	6.63	6.25
Merged-chr14-103682563-1	chr14	103682063	103683063	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198014, intron 2 of 6)	intron (NM_198014, intron 2 of 6)	16869.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	11.44	7.37	1.85	1.35	7.0	0.0	4.22	1.33	1.25
Merged-chr13-34344324-1	chr13	34343824	34344824	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001033167, exon 1 of 11)	exon (NM_001033167, exon 1 of 11)	858.0	NM_001033167	73102.0	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	34.9	31.33	24.97	45.21	27.06	41.8	32.74	30.95	8.74
Merged-chr12-3429921-1	chr12	3429421	3430421	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001270988, intron 1 of 11)	intron (NM_001270988, intron 1 of 11)	3064.0	NM_172421	75302.0	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2, transcriptional regulator	protein-coding	12.01	16.59	5.55	8.1	8.4	11.25	17.96	19.46	16.24
Merged-chr6-91110584-1	chr6	91110084	91111084	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018815, intron 1 of 39)	L1MB3|LINE|L1	6242.0	NM_018815	54563.0	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.57	2.76	1.85	6.07	2.33	5.63	4.22	1.33	8.74
Merged-chr1-156532979-2	chr1	156532480	156533480	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-25807.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	67.5	63.13	72.15	53.98	37.79	32.96	73.93	86.22	43.72
Merged-chr10-7390857-2	chr10	7390338	7391338	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	82639.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	2.86	1.84	0.0	2.02	1.87	1.61	3.17	1.77	5.62
Merged-chr9-114694264-1	chr9	114693764	114694764	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	5433.0	NM_146229	235661.0	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	13.73	7.37	6.47	8.77	8.4	4.82	10.56	8.84	5.0
Merged-chr12-69177214-1	chr12	69176714	69177714	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081406, intron 3 of 3)	B2_Mm1a|SINE|B2	6853.0	NM_025589	66483.0	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	8.58	3.69	0.0	4.05	4.67	1.61	4.22	0.44	4.37
Merged-chr19-43512961-1	chr19	43512461	43513461	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010324, intron 2 of 8)	intron (NM_010324, intron 2 of 8)	11644.0	NM_010324	14718.0	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	220.81	259.42	182.22	242.22	239.79	190.5	218.63	295.37	151.14
Merged-chr7-132620660-1	chr7	132620160	132621160	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029609, intron 1 of 6)	intron (NM_029609, intron 1 of 6)	10017.0	NM_029609	76429.0	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	76.66	62.67	64.75	74.22	69.04	76.36	106.67	67.65	54.33
Merged-chr12-73310375-1	chr12	73309875	73310875	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 4 of 15)	intron (NM_001037717, intron 4 of 15)	23527.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	13.16	12.9	9.25	4.72	7.93	8.04	6.34	6.63	3.12
Merged-chr11-76419434-1	chr11	76418934	76419934	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346670, intron 21 of 21)	intron (NM_001346670, intron 21 of 21)	12291.0	NM_019818	56322.0	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	3.43	5.99	7.4	10.8	6.06	6.43	2.11	3.54	6.25
Merged-chr19-16065092-1	chr19	16064592	16065592	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67739.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	14.87	14.75	1.85	11.47	6.06	5.63	9.51	9.73	11.87
Merged-chr9-77716351-1	chr9	77715851	77716851	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38184.0	NR_151778	14629.0	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	2.86	3.69	1.85	2.02	0.47	0.0	6.34	4.86	3.75
Merged-chr13-111792624-1	chr13	111792124	111793124	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	16369.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	6.86	7.83	5.55	14.84	10.26	8.04	6.34	5.75	10.62
Merged-chr1-23268316-1	chr1	23267816	23268816	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3953.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	9.15	10.14	3.7	8.77	4.2	4.02	4.22	11.05	9.99
Merged-chr2-13597152-1	chr2	13596652	13597652	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22841.0	NM_011701	22352.0	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	2.29	2.76	1.85	3.37	0.47	0.0	2.11	3.1	1.87
Merged-chr5-32755266-1	chr5	32754766	32755766	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177298, intron 3 of 7)	intron (NM_177298, intron 3 of 7)	-8924.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	11.44	8.29	22.2	8.77	6.53	12.86	8.45	7.07	5.62
Merged-chr10-45859331-1	chr10	45858831	45859831	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51627.0	NR_040624	320363.0	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	2.86	4.15	3.7	2.7	7.46	12.86	5.28	2.21	2.5
Merged-chr13-108043749-1	chr13	108043249	108044249	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001048250)	promoter-TSS (NM_001048250)	-725.0	NM_001048250	75616.0	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	79.52	114.74	109.14	82.99	75.57	100.47	139.42	140.17	123.03
Merged-chr13-99205070-2	chr13	99204542	99205542	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	20219.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	25.74	28.57	15.72	17.54	8.86	21.7	83.44	53.94	9.99
Merged-chr8-84953030-1	chr8	84952530	84953530	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357328, intron 5 of 6)	intron (NM_001357328, intron 5 of 6)	5040.0	NM_001357328	234542.0	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	1.14	0.46	3.7	2.7	2.33	0.8	3.17	2.21	5.0
Merged-chr4-67477724-1	chr4	67477224	67478224	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	650173.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	8.58	2.76	8.32	2.02	3.73	1.61	0.0	1.33	6.25
Merged-chr6-115288402-1	chr6	115287902	115288902	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	-36197.0	NM_001356406	110595.0	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	Timp-4	tissue inhibitor of metalloproteinase 4	protein-coding	4.58	2.3	1.85	4.05	6.53	0.0	3.17	4.86	7.49
Merged-chr4-150025908-1	chr4	150025408	150026408	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16885.0	NM_173371	100198.0	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	8.58	5.07	12.02	9.45	3.73	12.86	8.45	0.88	5.62
Merged-chr11-98217594-1	chr11	98217094	98218094	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026952, intron 2 of 12)	intron (NM_026952, intron 2 of 12)	14289.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	37.18	52.53	31.45	37.78	23.33	22.51	33.8	44.22	37.47
Merged-chr12-91668038-1	chr12	91667538	91668538	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-77551.0	NM_175335	83602.0	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	40.04	33.18	12.95	35.09	20.06	12.86	13.73	11.5	3.75
Merged-chr2-61631108-1	chr2	61630608	61631608	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_149323, exon 6 of 10)	non-coding (NR_149323, exon 6 of 10)	38011.0	NR_149323	21353.0	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	8.58	9.22	10.17	12.14	6.53	11.25	14.79	7.96	6.87
Merged-chr15-80225970-1	chr15	80225470	80226470	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-8110.0	NM_001357659	239555.0	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	8.58	3.23	13.87	6.75	1.87	9.65	5.28	1.33	0.62
Merged-chr18-89159492-1	chr18	89158992	89159992	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-37935.0	NM_178687	225825.0	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	12.01	10.6	9.25	4.72	1.4	4.82	11.62	11.05	7.49
Merged-chr7-34973260-1	chr7	34972760	34973760	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	60853.0	NM_008820	18624.0	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	5.15	5.53	8.32	10.8	7.46	19.29	4.22	3.98	5.62
Merged-chr19-40596532-1	chr19	40596032	40597032	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026260)	TTS (NM_026260)	-8069.0	NM_153554	56454.0	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	4.0	2.76	0.0	8.77	4.2	8.04	6.34	2.65	5.0
Merged-chr2-61815275-1	chr2	61814775	61815775	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10822.0	NM_009322	21375.0	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	1.14	0.46	1.85	0.67	1.87	0.0	0.0	0.88	2.5
Merged-chr11-20466206-1	chr11	20465706	20466706	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77047.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	4.58	3.69	5.55	9.45	4.2	6.43	3.17	2.65	3.12
Merged-chr15-8279588-1	chr15	8279088	8280088	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110482.0	NM_001162906	73692.0	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	4.58	3.69	4.62	1.35	1.87	3.22	8.45	6.19	5.62
Merged-chr1-186261499-1	chr1	186260999	186261999	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-144189.0	NM_146106	226791.0	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	5.15	3.69	1.85	3.37	3.27	3.22	4.22	0.88	2.5
Merged-chr14-104473162-1	chr14	104472662	104473662	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-5163.0	NM_011143	18996.0	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	2.86	1.84	3.7	4.05	1.4	0.8	2.11	3.54	3.12
Merged-chr13-99255021-1	chr13	99254521	99255521	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70198.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	6.86	1.84	1.85	2.02	3.27	1.61	4.22	3.98	2.5
Merged-chr2-177464821-2	chr2	177464319	177465319	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177568)	promoter-TSS (NM_001177568)	77.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	10.87	8.75	5.55	10.8	5.6	4.82	9.51	8.4	11.24
Merged-chr4-8689392-1	chr4	8688892	8689892	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1014.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	6.29	13.36	8.32	4.72	7.93	11.25	9.51	2.65	8.74
Merged-chr11-107676313-2	chr11	107675773	107676773	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 30 of 31)	intron (NM_198298, intron 30 of 31)	38551.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	80.09	90.31	57.35	87.71	76.97	89.22	98.23	140.17	69.95
Merged-chr15-93358558-1	chr15	93358058	93359058	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21623.0	NM_024189	67057.0	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	3.43	2.76	1.85	2.7	2.8	4.82	6.34	3.54	1.25
Merged-chr1-156681991-2	chr1	156681486	156682486	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145413, intron 7 of 7)	intron (NM_145413, intron 7 of 7)	-7647.0	NM_023141	30935.0	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	94.96	82.48	57.35	76.24	39.19	57.07	28.52	13.27	14.36
Merged-chr16-92671624-1	chr16	92671124	92672124	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	25705.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	10.87	12.9	8.32	8.77	6.53	8.04	11.62	6.19	10.62
Merged-chr3-40711175-1	chr3	40710675	40711675	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178386, intron 1 of 5)	L1_Mus3|LINE|L1	2304.0	NM_178386	73333.0	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	8.58	0.92	3.7	8.1	2.8	12.06	4.22	1.33	9.37
Merged-chr10-88368852-1	chr10	88368352	88369352	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-10560.0	NM_001004164	432486.0	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	14.3	8.75	11.1	11.47	4.2	21.7	13.73	6.63	8.74
Merged-chr12-73692452-1	chr12	73691952	73692952	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008856, intron 3 of 13)	intron (NM_008856, intron 3 of 13)	107656.0	NM_008856	18755.0	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	5.72	5.99	3.7	8.77	1.4	8.04	6.34	1.77	1.25
Merged-chr1-172473127-1	chr1	172472627	172473627	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	-2233.0	NM_029612	98365.0	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	20.02	32.72	16.65	18.89	16.33	24.11	25.35	42.45	31.23
Merged-chr2-161109790-1	chr2	161109290	161110290	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173368)	promoter-TSS (NM_173368)	-704.0	NR_126509	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	5.72	3.69	13.87	12.14	10.26	16.08	5.28	6.63	9.37
Merged-chr9-72955779-1	chr9	72955279	72956279	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3006.0	NM_026314	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	4.0	2.76	2.77	4.72	4.2	3.22	2.11	2.21	0.62
Merged-chr9-21101095-1	chr9	21100595	21101595	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9087.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	16.59	7.83	9.25	14.17	14.93	26.53	15.84	16.36	6.25
Merged-chr4-8545247-1	chr4	8544747	8545747	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	9603.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	7.44	18.43	20.35	10.8	10.26	24.92	16.9	9.29	23.11
Merged-chr3-98059266-1	chr3	98058766	98059766	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	45728.0	NM_010928	18129.0	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	38.9	26.73	17.57	18.22	24.72	20.09	30.63	17.24	10.62
Merged-chr11-72961876-1	chr11	72961376	72962376	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016745, intron 1 of 21)	intron (NM_016745, intron 1 of 21)	707.0	NM_001163337	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	2.29	4.15	1.85	4.05	5.6	1.61	2.11	6.19	2.5
Merged-chr8-12755527-1	chr8	12755027	12756027	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1489.0	NM_015804	50770.0	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	4.58	4.15	12.95	8.77	6.06	8.84	3.17	2.21	7.49
Merged-chr7-29954988-1	chr7	29954488	29955488	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178384)	promoter-TSS (NM_178384)	-923.0	NM_178384	72723.0	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74	zinc finger protein 74	protein-coding	25.74	37.32	43.47	26.31	31.26	33.76	9.51	13.71	8.12
Merged-chr9-98955939-1	chr9	98955439	98956439	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_003248)	promoter-TSS (NR_003248)	332.0	NM_012020	26927.0	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	2.86	0.46	0.0	2.7	2.8	5.63	1.06	0.44	2.5
Merged-chr19-5560100-1	chr19	5559600	5560600	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019935, intron 1 of 3)	CpG	475.0	NM_019935	18426.0	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	2.86	0.0	5.55	3.37	0.47	0.0	3.17	0.44	6.25
Merged-chr19-32956534-1	chr19	32956034	32957034	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	198957.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	21.17	50.23	49.02	50.6	42.45	54.66	44.36	51.73	39.35
Merged-chr19-46708086-1	chr19	46707586	46708586	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020577, exon 3 of 11)	exon (NM_020577, exon 3 of 11)	643.0	NM_020577	57344.0	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	45.19	36.4	25.9	70.17	52.25	56.27	20.07	33.6	19.98
Merged-chr4-3697210-1	chr4	3696710	3697710	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111096, intron 1 of 12)	(TTTTG)n|Simple_repeat|Simple_repeat	-17754.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	26.31	21.2	38.85	26.31	19.59	30.54	38.02	28.3	24.36
Merged-chrX-151116996-1	chrX	151116496	151117496	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamGypLTR3|LTR|Gypsy	-20453.0	NR_028392	69499.0	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	1.72	0.46	1.85	0.0	1.4	1.61	1.06	0.44	3.75
Merged-chr12-3778418-1	chr12	3777918	3778918	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027870, intron 18 of 19)	intron (NR_027870, intron 18 of 19)	-28562.0	NM_007872	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	12.01	6.91	3.7	11.47	18.19	12.86	12.67	17.69	8.74
Merged-chr19-44487439-1	chr19	44486939	44487939	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-6033.0	NM_011720	22423.0	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	1.14	1.84	0.0	0.0	1.4	0.0	1.06	2.21	8.74
Merged-chrX-70425509-1	chrX	70425009	70426009	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30769.0	NM_001033807	619303.0	Mm.388146	NM_001033807	ENSMUSG00000073141	4930567H17Rik	-	RIKEN cDNA 4930567H17 gene	protein-coding	0.0	1.38	0.0	0.0	0.0	0.0	2.11	1.77	0.62
Merged-chr14-50865552-1	chr14	50865052	50866052	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009351, intron 4 of 54)	MTD|LTR|ERVL-MaLR	5002.0	NM_009351	21745.0	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	31.46	32.72	25.9	26.31	23.33	31.35	39.08	34.05	28.73
Merged-chr5-19724140-1	chr5	19723640	19724640	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-183378.0	NM_001170745	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	4.0	6.91	1.85	2.7	0.0	6.43	0.0	1.77	2.5
Merged-chr10-81432331-1	chr10	81431831	81432831	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5158.0	NM_026756	18029.0	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	110.98	64.51	57.35	107.95	71.38	55.46	120.41	136.19	57.46
Merged-chr5-115491293-1	chr5	115490793	115491793	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mur2|SINE|Alu	-6809.0	NM_133760	75387.0	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	30.89	26.73	17.57	33.06	25.19	21.7	23.24	22.11	22.48
Merged-chr14-34518447-2	chr14	34517951	34518951	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030062, intron 1 of 2)	intron (NM_030062, intron 1 of 2)	4350.0	NM_030062	78243.0	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	5.15	5.07	2.77	2.7	3.73	3.22	8.45	6.63	6.25
Merged-chr6-66357228-1	chr6	66356728	66357728	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	84723.0	NR_136927	102633773.0	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	5.15	11.06	1.85	2.7	5.13	2.41	9.51	6.19	5.0
Merged-chr1-52099089-1	chr1	52098589	52099589	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308266, intron 17 of 24)	intron (NM_001308266, intron 17 of 24)	-20349.0	NM_001357627	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	9.15	4.61	0.0	3.37	3.27	0.8	2.11	1.33	1.25
Merged-chr2-167269939-1	chr2	167269439	167270439	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-29402.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	4.58	5.99	2.77	9.45	2.33	9.65	14.79	10.17	8.12
Merged-chr3-14959130-1	chr3	14958630	14959630	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12071.0	NR_040549	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	6.29	7.83	5.55	4.72	8.4	4.82	3.17	0.88	1.25
Merged-chr15-31452472-1	chr15	31451972	31452972	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145852, intron 1 of 4)	intron (NM_145852, intron 1 of 4)	1217.0	NM_145852	252967.0	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	16.59	15.21	15.72	26.99	32.19	26.53	43.3	36.26	10.62
Merged-chr5-54024855-1	chr5	54024355	54025355	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	MIRb|SINE|MIR	26332.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	7.44	8.75	6.47	7.42	9.33	9.65	9.51	9.73	3.75
Merged-chr9-70388990-1	chr9	70388490	70389490	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	16763.0	NR_049200	100885839.0		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	10.87	13.82	6.47	13.49	9.8	8.84	4.22	0.88	1.25
Merged-chr19-10486558-1	chr19	10486058	10487058	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3661.0	NM_133689	67752.0	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	1.72	3.69	3.7	7.42	1.87	1.61	5.28	2.65	0.0
Merged-chr1-154788265-1	chr1	154787765	154788765	+	590.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62345.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	4.58	5.07	7.4	9.45	5.6	16.08	8.45	2.21	5.62
Merged-chr1-170820304-1	chr1	170819804	170820804	+	590.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 7 of 15)	RLTR26B_MM|LTR|ERVK	47467.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	3.43	2.76	3.7	10.8	1.87	4.82	3.17	3.1	1.25
Merged-chr6-148705877-2	chr6	148705381	148706381	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-27881.0	NR_131024	75831.0	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA	1.72	1.38	0.0	3.37	0.47	0.0	2.11	3.54	0.62
Merged-chr3-79628305-1	chr3	79627805	79628805	+	590.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_029482)	promoter-TSS (NM_029482)	462.0	NM_025794	66841.0	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	128.14	95.84	60.12	105.93	97.97	69.13	103.51	84.45	51.84
Merged-chr11-94937091-3	chr11	94936563	94937563	+	589.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	839.0	NM_007742	12842.0	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	3.43	1.38	5.55	1.35	0.47	4.82	0.0	1.77	3.75
Merged-chr4-41050859-2	chr4	41050372	41051372	+	589.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2736.0	NM_007473	11832.0	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	3.43	1.38	1.85	3.37	1.4	0.0	0.0	1.77	2.5
Merged-chr7-105396372-2	chr7	105395878	105396878	+	589.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001242363, intron 1 of 12)	L2c|LINE|L2	3676.0	NM_001242364	74349.0	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	13.16	12.44	1.85	6.07	5.6	3.22	8.45	7.96	9.37
Merged-chr15-53221432-2	chr15	53220934	53221934	+	589.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	124749.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.15	5.99	7.4	5.4	3.73	4.82	3.17	0.44	5.0
Merged-chr13-22029322-2	chr13	22028826	22029826	+	589.541626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6317.0	NM_175659	319168.0	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	42.9	58.52	43.47	36.43	34.52	20.9	24.29	36.26	14.36
Merged-chr2-127363108-2	chr2	127362643	127363643	+	589.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-143.0	NM_009633	11552.0	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	5.15	2.3	0.0	4.72	1.87	0.0	7.39	1.77	1.25
Merged-chr19-10034929-1	chr19	10034429	10035429	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_153790, exon 10 of 11)	non-coding (NR_153790, exon 10 of 11)	-6619.0	NM_021890	60527.0	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	5.15	4.15	3.7	4.05	4.67	5.63	4.22	2.65	2.5
Merged-chr10-68137677-1	chr10	68137177	68138177	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	141049.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	29.75	23.96	22.2	35.09	22.86	28.94	20.07	23.43	18.11
Merged-chr7-126230552-1	chr7	126230052	126231052	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131046, intron 2 of 4)	RMER1C|Other|Other	7052.0	NR_131047	76728.0	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	Gm44875	RIKEN cDNA 1700123J17 gene	ncRNA	2.86	0.92	0.0	1.35	0.93	4.82	3.17	0.88	1.87
Merged-chr6-35134785-1	chr6	35134285	35135285	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1048.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	7.44	14.28	4.62	12.82	15.39	12.06	13.73	15.03	16.86
Merged-chr5-139792727-1	chr5	139792227	139793227	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	1191.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	180.77	156.67	87.87	196.34	174.94	139.06	130.97	133.09	86.18
Merged-chr8-39638251-1	chr8	39637751	39638751	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113326, intron 1 of 9)	intron (NM_001113326, intron 1 of 9)	4427.0	NM_031195	20288.0	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	16.02	23.5	31.45	22.27	18.66	34.56	34.85	24.32	38.72
Merged-chr4-139382156-1	chr4	139381656	139382656	+	589.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160319, intron 1 of 105)	B3A|SINE|B2	1497.0	NM_001160319	69116.0	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	135.0	152.06	108.22	121.45	98.43	87.61	223.91	214.45	88.68
Merged-chr9-61985273-2	chr9	61984762	61985762	+	589.416626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028748, intron 2 of 7)	intron (NM_028748, intron 2 of 7)	-38463.0	NM_024245	71819.0	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	4.0	7.37	6.47	6.07	6.53	11.25	6.34	3.54	5.62
Merged-chr2-49381205-3	chr2	49380707	49381707	+	589.388916	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-70279.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.0	6.91	1.85	4.05	2.8	0.0	10.56	5.31	6.25
Merged-chr16-30364835-2	chr16	30364344	30365344	+	589.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001128096, intron 3 of 33)	intron (NM_001128096, intron 3 of 33)	23686.0	NM_001128094	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	16.02	10.6	16.65	12.82	6.06	15.27	12.67	8.84	8.74
Merged-chr14-27230305-3	chr14	27229778	27230778	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	MLT1N2|LTR|ERVL-MaLR	-7732.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	67.5	51.15	18.5	85.69	55.98	29.74	32.74	40.24	13.12
Merged-chr2-155538422-1	chr2	155537922	155538922	+	589.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019811, intron 2 of 17)	(TG)n|Simple_repeat|Simple_repeat	18508.0	NR_040613	74945.0	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	6.86	11.06	13.87	0.67	1.4	3.22	64.43	45.99	26.85
Merged-chr18-32399714-3	chr18	32399223	32400223	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360876, intron 1 of 17)	intron (NM_001360876, intron 1 of 17)	-21439.0	NR_045403	402767.0	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	1.72	6.45	10.17	8.1	2.8	8.04	5.28	4.86	5.0
Merged-chr5-121602063-3	chr5	121601552	121602552	+	589.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178799, intron 8 of 10)	intron (NM_178799, intron 8 of 10)	-8228.0	NM_001308450	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	21.74	11.52	13.87	13.49	9.8	38.58	17.96	8.84	11.24
Merged-chr2-128805486-2	chr2	128804955	128805955	+	589.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-12848.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	26.89	26.26	48.1	22.94	10.26	28.13	14.79	15.48	11.24
Merged-chr9-87043450-2	chr9	87042963	87043963	+	589.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359962, intron 8 of 14)	intron (NM_001359962, intron 8 of 14)	21434.0	NM_001359962	266690.0	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	5.15	4.61	3.7	4.72	3.27	2.41	4.22	2.21	2.5
Merged-chr19-34043294-3	chr19	34042817	34043817	+	589.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172837, intron 9 of 9)	MIRb|SINE|MIR	-24041.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	4.58	3.23	1.85	1.35	4.67	2.41	5.28	5.31	1.25
Merged-chr11-97629041-2	chr11	97628515	97629515	+	589.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175332, exon 1 of 1)	exon (NM_175332, exon 1 of 1)	701.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	15.45	13.36	11.1	11.47	6.06	7.23	11.62	3.98	3.75
Merged-chr2-27401729-2	chr2	27401218	27402218	+	589.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009500, intron 1 of 27)	ORR1A2-int|LTR|ERVL-MaLR	25890.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	21.17	17.05	27.75	31.04	13.53	15.27	21.12	16.36	6.87
Merged-chr2-45103528-1	chr2	45103028	45104028	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_149354, intron 2 of 2)	intron (NR_149354, intron 2 of 2)	6749.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	60.07	42.85	27.75	72.19	34.99	64.3	68.65	38.03	44.97
Merged-chr8-70901227-1	chr8	70900727	70901727	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3784.0	NM_029751	76808.0	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	16.02	12.44	14.8	1.35	1.4	3.22	10.56	14.59	18.74
Merged-chr12-100680226-1	chr12	100679726	100680726	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153587, intron 1 of 17)	RMER10B|LTR|ERVL	44894.0	NM_001330702	73086.0	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	8.01	6.91	18.5	10.12	11.66	9.65	3.17	7.07	6.87
Merged-chr10-60658372-1	chr10	60657872	60658872	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252635, intron 2 of 68)	intron (NM_001252635, intron 2 of 68)	38118.0	NM_001252635	22295.0	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	1.14	0.92	0.92	1.35	1.87	3.22	2.11	0.88	3.12
Merged-chr17-34343524-1	chr17	34343024	34344024	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010381, intron 2 of 3)	intron (NM_010381, intron 2 of 3)	1121.0	NM_010381	100504404.0	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	15.45	23.5	34.22	5.4	3.27	1.61	3.17	6.19	3.75
Merged-chr5-136519215-1	chr5	136518715	136519715	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291238, intron 1 of 22)	intron (NM_001291238, intron 1 of 22)	46766.0	NM_001291239	13047.0	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	6.29	7.83	3.7	6.75	3.27	4.02	4.22	1.77	9.99
Merged-chr14-72533982-1	chr14	72533482	72534482	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	176021.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	5.15	4.61	3.7	6.07	2.33	2.41	2.11	2.21	3.75
Merged-chr3-41182524-1	chr3	41182024	41183024	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99478.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	2.86	1.38	0.0	1.35	3.27	3.22	4.22	5.31	2.5
Merged-chr2-46372983-1	chr2	46372483	46373483	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	676378.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.15	4.61	0.0	5.4	10.73	8.84	8.45	2.21	6.25
Merged-chr8-34188761-1	chr8	34188261	34189261	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22049.0	NR_105820	102465211.0		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.0	2.76	1.85	0.0	4.2	4.02	3.17	3.54	6.25
Merged-chr11-67085660-2	chr11	67085165	67086165	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099635, intron 10 of 40)	intron (NM_001099635, intron 10 of 40)	7365.0	NM_001099635	17883.0	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	3.43	3.23	0.0	2.7	1.4	1.61	3.17	0.88	3.75
Merged-chr17-55931587-2	chr17	55931087	55932087	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13672.0	NM_146249	240120.0	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	29.75	24.88	10.17	45.88	35.45	20.9	48.58	82.24	19.98
Merged-chr16-32200789-2	chr16	32200294	32201294	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20994.0	NM_001033539	328660.0	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	14.3	9.22	18.5	10.12	5.6	3.22	17.96	41.56	21.23
Merged-chr1-72307022-1	chr1	72306522	72307522	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-399.0	NM_001357520	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	36.04	43.31	20.35	24.96	40.59	32.96	46.47	65.88	23.11
Merged-chr11-106663494-1	chr11	106662994	106663994	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 13 of 14)	intron (NM_001305158, intron 13 of 14)	-50564.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	48.62	60.36	49.02	32.39	33.12	78.77	39.08	33.6	33.1
Merged-chr16-20724597-1	chr16	20724097	20725097	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001289896, exon 6 of 6)	3' UTR (NM_001289896, exon 6 of 6)	6001.0	NM_001289896	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.0	0.92	7.4	1.35	1.87	4.82	2.11	3.98	5.0
Merged-chr4-139611720-1	chr4	139611220	139612220	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-11174.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	13.73	8.29	3.7	7.42	3.73	4.82	7.39	3.98	1.87
Merged-chr2-84783482-1	chr2	84782982	84783982	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8053.0	NM_009776	12258.0	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	5.15	7.37	3.7	4.05	7.93	3.22	4.22	7.07	2.5
Merged-chrX-151966764-2	chrX	151966275	151967275	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A|LTR|ERVL-MaLR	-35121.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	2.29	1.84	1.85	4.05	0.93	1.61	10.56	3.1	1.25
Merged-chr4-148060516-1	chr4	148060016	148061016	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010840)	TTS (NM_010840)	19327.0	NM_001161798	17769.0	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	methylenetetrahydrofolate reductase	protein-coding	4.0	0.92	3.7	4.72	3.73	3.22	1.06	0.88	3.75
Merged-chr19-45242586-2	chr19	45242090	45243090	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7354.0	NM_010691	16814.0	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox 1	protein-coding	6.29	3.23	3.7	5.4	1.4	4.82	4.22	0.88	1.25
Merged-chr15-38403670-1	chr15	38403170	38404170	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86877.0	NR_105916	102465574.0		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.72	11.06	4.62	7.42	6.53	29.74	11.62	3.54	3.75
Merged-chr10-19504128-1	chr10	19503628	19504628	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152785, intron 1 of 2)	intron (NR_152785, intron 1 of 2)	9485.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	28.6	21.2	17.57	18.22	15.39	31.35	20.07	12.38	22.48
Merged-chr15-36930561-2	chr15	36930088	36931088	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76814.0	NM_026521	68036.0	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	6.86	8.75	3.7	6.75	0.93	1.61	4.22	9.29	9.37
Merged-chr15-41842181-2	chr15	41841680	41842680	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152565, intron 12 of 17)	intron (NR_152565, intron 12 of 17)	11222.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.72	6.45	11.1	6.75	9.33	12.86	7.39	8.84	11.87
Merged-chr11-32613721-1	chr11	32613221	32614221	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 15 of 18)	intron (NM_009288, intron 15 of 18)	-28834.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.0	2.76	7.4	6.07	2.33	16.88	2.11	3.54	7.49
Merged-chr18-53256039-1	chr18	53255539	53256539	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	intron (NM_029394, intron 1 of 6)	10377.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	336.37	331.76	180.37	445.31	410.06	265.25	296.79	326.76	121.78
Merged-chr2-150667258-1	chr2	150666758	150667758	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040331)	promoter-TSS (NR_040331)	-236.0	NR_040331	109344.0	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	23.45	2.76	7.4	14.84	9.33	6.43	10.56	9.73	4.37
Merged-chr17-71214775-1	chr17	71214275	71215275	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164885, intron 1 of 19)	intron (NM_001164885, intron 1 of 19)	10121.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	128.14	129.02	106.37	99.86	90.97	111.73	102.45	156.53	63.7
Merged-chr15-99400871-1	chr15	99400371	99401371	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001171034, intron 2 of 10)	B3|SINE|B2	7652.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	18.31	24.42	13.87	10.12	3.73	11.25	15.84	3.1	12.49
Merged-chr8-83750049-2	chr8	83749559	83750559	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-8748.0	NM_001163031	26364.0	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	188.78	186.62	114.69	152.49	128.29	94.04	101.39	133.53	59.95
Merged-chr6-146525695-1	chr6	146525195	146526195	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23472.0	NM_019923	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	4.58	0.46	11.1	2.7	3.27	0.0	3.17	7.96	5.0
Merged-chr14-13997965-1	chr14	13997465	13998465	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-14526.0	NM_139227	246103.0	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	20.02	14.75	5.55	9.45	9.33	4.02	22.18	18.13	9.37
Merged-chr8-71923535-1	chr8	71923035	71924035	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133358, intron 1 of 3)	intron (NM_133358, intron 1 of 3)	710.0	NM_133358	170938.0	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	146.45	189.38	144.29	133.59	206.66	204.97	191.17	156.53	109.92
Merged-chr13-34644585-1	chr13	34644085	34645085	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025831, intron 1 of 4)	intron (NM_025831, intron 1 of 4)	8096.0	NM_025831	66895.0	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	10.87	16.13	15.72	9.45	8.86	30.54	6.34	3.54	3.12
Merged-chr17-87215594-2	chr17	87215106	87216106	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20664.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	2.86	2.76	3.7	5.4	4.2	6.43	4.22	5.31	5.0
Merged-chr5-135982614-1	chr5	135982114	135983114	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011776, intron 1 of 7)	intron (NM_011776, intron 1 of 7)	2509.0	NM_011776	22788.0	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	7.44	0.92	0.0	2.02	3.73	0.0	1.06	0.0	3.75
Merged-chr5-32976694-1	chr5	32976194	32977194	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025426, intron 39 of 42)	intron (NM_001025426, intron 39 of 42)	-42122.0	NM_011738	22629.0	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	2.86	6.45	7.4	8.77	3.27	8.84	2.11	2.21	5.62
Merged-chr16-11211549-1	chr16	11211049	11212049	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038156, intron 1 of 2)	RLTR48A|LTR|ERV1	8166.0	NR_038156	69918.0	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	7.44	7.37	12.95	7.42	6.06	12.86	8.45	16.8	11.24
Merged-chr6-124990773-1	chr6	124990273	124991273	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-5947.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	20.02	18.43	41.62	19.57	18.19	25.72	23.24	8.4	9.99
Merged-chr6-125302313-1	chr6	125301813	125302813	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11572.0	NM_010736	17000.0	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	7.44	5.53	4.62	10.8	11.2	20.9	8.45	15.48	16.24
Merged-chr2-102804305-1	chr2	102803805	102804805	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57545.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	4.58	6.91	12.95	2.7	3.73	9.65	2.11	1.77	6.25
Merged-chr15-25428727-1	chr15	25428227	25429227	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027376, intron 1 of 1)	intron (NR_027376, intron 1 of 1)	14535.0	NR_027376	432939.0	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	1.14	4.15	7.4	2.02	8.4	3.22	3.17	0.88	0.0
Merged-chr17-48320763-1	chr17	48320263	48321263	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177083, intron 3 of 5)	intron (NM_177083, intron 3 of 5)	4601.0	NM_177083	320148.0	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	22.31	38.71	74.92	27.66	23.79	57.87	38.02	38.91	31.85
Merged-chr9-123933857-1	chr9	123933357	123934357	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34835.0	NM_009912	12768.0	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	24.03	40.55	49.95	39.13	32.19	46.62	24.29	24.32	20.61
Merged-chr15-64000172-1	chr15	63999672	64000672	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144846, intron 1 of 11)	MIR|SINE|MIR	-2106.0	NM_001360035	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	8.01	11.98	18.5	9.45	6.06	16.88	13.73	5.75	13.74
Merged-chr16-43354697-1	chr16	43354197	43355197	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	MTD|LTR|ERVL-MaLR	65499.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	12.01	12.44	10.17	16.19	10.26	3.22	11.62	5.31	16.86
Merged-chr6-120493087-1	chr6	120492587	120493587	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	720.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	1.72	0.92	11.1	3.37	0.93	0.0	5.28	0.44	1.87
Merged-chr13-40843551-1	chr13	40843051	40844051	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16217.0	NM_023887	14538.0	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	9.72	3.23	3.7	8.1	2.8	8.84	6.34	2.65	2.5
Merged-chr7-64342259-1	chr7	64341759	64342759	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	31836.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	42.9	73.26	44.4	99.86	72.31	65.91	102.45	96.39	79.32
Merged-chr1-37559530-1	chr1	37559030	37560030	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18514.0	NM_173870	269181.0	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	24.6	26.26	31.45	24.29	21.46	36.97	35.91	40.68	18.11
Merged-chr3-146656062-1	chr3	146655562	146656562	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4745.0	NM_029144	75015.0	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	19.45	18.43	17.57	39.81	20.99	24.92	38.02	20.34	41.84
Merged-chr6-71931857-1	chr6	71931357	71932357	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009088, intron 12 of 33)	intron (NM_009088, intron 12 of 33)	22804.0	NM_009088	20019.0	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	28.6	32.25	36.07	32.39	23.33	51.44	40.14	29.63	29.35
Merged-chr6-88926995-1	chr6	88926495	88927495	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24744.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	6.86	1.84	1.85	7.42	0.93	6.43	2.11	0.44	8.74
Merged-chr9-116089046-1	chr9	116088546	116089546	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009371, exon 8 of 8)	3' UTR (NM_009371, exon 8 of 8)	86317.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.15	11.98	24.97	10.8	5.6	29.74	8.45	9.73	18.11
Merged-chr9-44288255-1	chr9	44287755	44288755	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_138955)	promoter-TSS (NM_138955)	-11.0	NM_138955	192663.0	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP binding cassette subfamily G member 4	protein-coding	4.58	3.69	0.0	2.02	1.87	4.82	3.17	2.21	3.12
Merged-chr7-142038031-1	chr7	142037531	142038531	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357705, intron 1 of 4)	intron (NM_001357705, intron 1 of 4)	22822.0	NM_001347560	101513.0	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	6.86	2.3	1.85	3.37	1.87	1.61	4.22	2.21	6.25
Merged-chr19-11368523-1	chr19	11368023	11369023	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6965.0	NM_001310331	666907.0		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	13.73	18.89	9.25	9.45	16.33	10.45	4.22	4.42	23.11
Merged-chr17-34239335-1	chr17	34238835	34239835	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010389, intron 1 of 5)	intron (NM_010389, intron 1 of 5)	430.0	NM_010389	15002.0	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	25.17	15.67	40.7	18.89	11.2	28.13	67.6	76.05	70.57
Merged-chr12-56525559-1	chr12	56525059	56526059	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045082, intron 1 of 6)	intron (NR_045082, intron 1 of 6)	3861.0	NR_045082	104798.0	Mm.310950	NR_045082	ENSMUSG00000112343	Sfta3-ps	AI413669|E030019B13Rik|Nanci	surfactant associated 3, pseudogene	ncRNA	1.72	2.76	0.92	0.0	0.47	1.61	2.11	3.1	2.5
Merged-chr4-127168487-1	chr4	127167987	127168987	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_198618)	promoter-TSS (NM_198618)	-717.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	0.57	1.38	9.25	1.35	1.87	3.22	2.11	0.44	3.75
Merged-chr6-55057050-1	chr6	55056550	55057550	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 7 of 16)	MTC|LTR|ERVL-MaLR	19049.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.58	3.69	5.55	4.05	2.8	1.61	22.18	29.18	14.99
Merged-chr4-95385871-1	chr4	95385371	95386371	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-171636.0	NM_001113412	75578.0	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	9.15	2.3	3.7	5.4	3.27	1.61	4.22	0.44	5.0
Merged-chr2-76673841-2	chr2	76673327	76674327	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_010222)	promoter-TSS (NM_010222)	-729.0	NM_001355080	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	21.17	34.1	25.9	21.59	26.12	30.54	23.24	18.57	36.85
Merged-chr10-41933603-1	chr10	41933103	41934103	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001034858, intron 12 of 17)	PB1D9|SINE|Alu	46164.0	NM_001013370	140742.0	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	17.73	17.51	21.27	16.19	11.2	14.47	19.01	18.57	7.49
Merged-chr18-60371933-1	chr18	60371433	60372433	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-1683.0	NM_021792	60440.0	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	8.01	9.22	12.02	2.7	6.06	12.86	12.67	3.1	2.5
Merged-chr17-71184052-1	chr17	71183552	71184552	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022882)	promoter-TSS (NM_022882)	74.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	206.51	166.34	139.67	230.75	130.16	131.82	213.35	140.17	130.53
Merged-chr11-119920028-1	chr11	119919528	119920528	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001085498)	TTS (NM_001085498)	6218.0	NM_001085498	208092.0	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.72	2.3	0.0	2.02	2.33	3.22	1.06	0.0	1.25
Merged-chr4-94901820-1	chr4	94901320	94902320	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27023.0	NM_027089	67753.0	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	7.44	11.52	13.87	11.47	11.66	12.86	11.62	25.2	13.12
Merged-chr13-37477880-1	chr13	37477380	37478380	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	132535.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	1.72	2.76	3.7	2.02	1.87	0.8	4.22	2.21	6.25
Merged-chr5-124027477-1	chr5	124026977	124027977	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177876, intron 1 of 3)	intron (NM_177876, intron 1 of 3)	4783.0	NM_177876	330192.0	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	25.74	16.13	17.57	31.04	12.6	15.27	67.6	29.18	23.11
Merged-chr5-145115888-1	chr5	145115388	145116388	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023142, intron 1 of 9)	BC1_Mm|scRNA|scRNA	1632.0	NM_023142	11867.0	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	122.42	177.4	148.92	103.23	86.3	116.55	157.37	167.58	111.79
Merged-chr6-140619335-1	chr6	140618835	140619835	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3328.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	29.75	15.21	12.02	41.16	19.59	19.29	50.7	22.55	13.12
Merged-chr14-51902991-1	chr14	51902491	51903491	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8998.0	NM_001360269	29811.0	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	5.15	2.76	0.0	7.42	1.87	0.8	4.22	3.1	0.62
Merged-chr2-30328843-1	chr2	30328343	30329343	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198304, intron 24 of 43)	ID_B1|SINE|B4	30473.0	NM_139302	227700.0	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	22.31	10.6	10.17	18.22	7.46	10.45	11.62	9.29	2.5
Merged-chr10-108190206-1	chr10	108189706	108190706	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027892, intron 1 of 25)	ID4_|SINE|ID	27806.0	NM_027892	17931.0	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	26.31	32.25	8.32	28.34	16.79	16.08	34.85	34.49	26.85
Merged-chr11-70588767-2	chr11	70588279	70589279	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016713, intron 1 of 30)	intron (NM_016713, intron 1 of 30)	25898.0	NM_016713	50932.0	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	64.07	52.07	32.37	45.21	32.19	61.89	80.27	69.42	44.97
Merged-chr8-106601253-1	chr8	106600753	106601753	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-2097.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	2.86	3.23	6.47	4.72	1.87	3.22	2.11	0.0	1.25
Merged-chr6-65144253-1	chr6	65143753	65144753	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019455, intron 1 of 5)	(CA)n|Simple_repeat|Simple_repeat	477.0	NM_019455	54486.0	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	314.06	353.42	126.72	410.23	383.0	175.23	267.21	323.22	74.32
Merged-chr7-55843469-1	chr7	55842969	55843969	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	1398.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	42.33	52.99	60.12	43.18	27.52	40.99	40.14	49.52	46.84
Merged-chr4-135438111-1	chr4	135437611	135438611	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4306.0	NM_022980	53902.0	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	8.58	5.07	4.62	4.72	1.87	7.23	5.28	5.75	5.0
Merged-chr10-56163162-1	chr10	56162662	56163662	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033385, intron 15 of 32)	intron (NM_001033385, intron 15 of 32)	56245.0	NM_001163833	73390.0	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	1.14	3.69	1.85	3.37	6.06	8.04	4.22	6.63	5.0
Merged-chr10-19558483-1	chr10	19557983	19558983	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33466.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	6.86	14.28	4.62	13.49	6.06	12.86	3.17	3.98	8.12
Merged-chr7-5047486-3	chr7	5047003	5048003	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-4029.0	NM_026900	68992.0	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	3.43	5.07	3.7	6.07	2.33	8.04	2.11	0.88	1.25
Merged-chr2-27756988-1	chr2	27756488	27757488	+	589.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290481, intron 8 of 9)	intron (NM_001290481, intron 8 of 9)	46405.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	13.73	21.2	38.85	14.84	18.19	41.8	10.56	10.17	25.61
Merged-chr5-137652671-1	chr5	137652171	137653171	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303271, intron 11 of 12)	intron (NM_001303271, intron 11 of 12)	-6957.0	NM_010571	16369.0	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	8.58	1.38	3.7	4.05	2.8	8.04	1.06	0.0	3.75
Merged-chr14-58075056-1	chr14	58074556	58075556	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013518, intron 1 of 2)	CpG	2370.0	NM_013518	14180.0	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.57	1.38	0.0	6.75	1.87	2.41	4.22	1.33	3.75
Merged-chr1-88256413-1	chr1	88255913	88256913	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001281466, exon 36 of 42)	exon (NM_001281466, exon 36 of 42)	12995.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	8.58	7.37	8.32	14.17	6.06	16.08	16.9	7.96	16.24
Merged-chr13-107893562-1	chr13	107893062	107894062	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3498.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	17.73	20.74	37.92	30.36	15.39	17.68	10.56	13.27	21.86
Merged-chr11-78710194-1	chr11	78709694	78710694	+	589.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12769.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	5.72	4.15	0.0	3.37	5.13	3.22	5.28	4.42	1.25
Merged-chr2-26300953-1	chr2	26300453	26301453	+	589.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6396.0	NM_177841	329366.0	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	6.86	2.3	1.85	0.67	0.93	0.0	0.0	1.77	2.5
Merged-chr8-13163968-2	chr8	13163470	13164470	+	588.916626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	MTC|LTR|ERVL-MaLR	4809.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	37.76	29.95	35.15	22.27	29.39	26.53	40.14	24.32	16.86
Merged-chr5-92099601-2	chr5	92099116	92100116	+	588.900024	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359197, intron 1 of 10)	intron (NM_001359197, intron 1 of 10)	-15872.0	NM_001080795	23881.0	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	21.17	11.98	7.4	12.14	6.06	14.47	4.22	17.24	19.36
Merged-chr17-34605143-2	chr17	34604655	34605655	+	588.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163379)	promoter-TSS (NM_001163379)	-706.0	NM_001163379	55979.0	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	211.66	194.91	207.19	158.56	114.76	146.29	210.18	198.98	148.64
Merged-chr5-135689920-2	chr5	135689416	135690416	+	588.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008898, intron 1 of 15)	intron (NM_008898, intron 1 of 15)	771.0	NM_008898	18984.0	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	74.94	55.75	27.75	109.3	94.23	73.14	102.45	93.3	34.35
Merged-chr13-35947565-2	chr13	35947128	35948128	+	588.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20278.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	4.0	5.99	1.85	0.67	1.4	1.61	7.39	0.44	2.5
Merged-chr13-44507248-3	chr13	44506746	44507746	+	588.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	67519.0	NR_045489	69491.0	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	2.86	3.23	1.85	11.47	4.67	9.65	15.84	14.59	7.49
Merged-chr12-80810216-1	chr12	80809716	80810716	+	588.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	19684.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	37.18	51.61	35.15	31.71	27.52	45.01	58.09	44.22	47.46
Merged-chr3-122474295-1	chr3	122473795	122474795	+	588.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013867, intron 3 of 11)	intron (NM_013867, intron 3 of 11)	-9274.0	NM_001355264	29815.0	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	1.72	1.84	1.85	4.05	1.4	4.82	3.17	2.65	4.37
Merged-chr18-67610525-2	chr18	67610033	67611033	+	588.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CGG)n|Simple_repeat|Simple_repeat	30822.0	NM_001357523	225659.0	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	24.6	11.98	25.9	41.16	15.86	16.88	28.52	8.84	10.62
Merged-chr9-53692113-2	chr9	53691614	53692614	+	588.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175562, intron 1 of 1)	B2_Mm1a|SINE|B2	14118.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.29	6.45	9.25	8.77	11.2	12.06	5.28	10.17	4.37
Merged-chrX-20363335-2	chrX	20362823	20363823	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1158.0	NM_133669	19889.0	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	16.02	28.11	10.17	14.17	12.6	21.7	16.9	19.9	8.12
Merged-chr17-56357724-2	chr17	56357195	56358195	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172132, intron 5 of 22)	intron (NM_172132, intron 5 of 22)	31645.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	9.15	1.84	0.0	4.72	0.47	0.0	4.22	1.33	5.0
Merged-chr3-15876910-1	chr3	15876410	15877410	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-28423.0	NM_001173459	100038947.0	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	2.29	4.61	4.62	8.1	7.93	14.47	4.22	5.31	3.75
Merged-chr16-55641172-2	chr16	55640663	55641663	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	146432.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	4.0	4.61	9.25	3.37	0.93	3.22	7.39	3.98	6.25
Merged-chr17-28769674-2	chr17	28769172	28770172	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011950, intron 1 of 11)	intron (NM_011950, intron 1 of 11)	355.0	NM_011950	26415.0	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	5.15	2.3	1.85	5.4	1.4	4.82	4.22	2.21	2.5
Merged-chr6-142715648-1	chr6	142715148	142716148	+	588.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13374.0	NM_001310143	20928.0	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	18.31	19.35	12.95	20.24	11.66	35.37	19.01	17.69	19.98
Merged-chr10-19491970-1	chr10	19491470	19492470	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152784, intron 2 of 3)	intron (NR_152784, intron 2 of 3)	-2673.0	NR_152785	102635880.0	Mm.331974	NR_152784	ENSMUSG00000110902	Gm33104	-	predicted gene, 33104	ncRNA	17.73	10.6	3.7	15.52	14.93	8.84	12.67	7.96	6.25
Merged-chr18-57400886-1	chr18	57400386	57401386	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4529.0	NR_152223	100503007.0	Mm.238087	NR_152223		Gm19500	-	predicted gene, 19500	ncRNA	2.86	1.38	1.85	2.02	0.47	0.0	4.22	2.21	2.5
Merged-chr8-106198967-1	chr8	106198467	106199467	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001357382)	TTS (NM_001357382)	11966.0	NM_001007567	66432.0	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	8.58	6.45	2.77	5.4	6.06	0.0	5.28	7.52	6.25
Merged-chr6-48739165-1	chr6	48738665	48739665	+	588.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_175860, intron 1 of 2)	intron (NM_175860, intron 1 of 2)	118.0	NM_008376	16205.0	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	22.31	14.28	3.7	1.35	4.2	1.61	5.28	2.65	1.25
Merged-chr12-84288682-2	chr12	84288183	84289183	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252625, intron 1 of 9)	B3|SINE|B2	3387.0	NM_001252626	77219.0	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	5.72	6.45	1.85	8.1	5.13	1.61	7.39	6.63	2.5
Merged-chr10-78139420-1	chr10	78138920	78139920	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30348.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	26.31	12.44	16.65	35.09	10.26	16.88	25.35	8.4	10.62
Merged-chr11-69689221-2	chr11	69688712	69689712	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011614, intron 5 of 6)	intron (NM_011614, intron 5 of 6)	-3658.0	NM_023517	69583.0	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	54.92	23.96	47.17	49.93	20.53	42.6	53.87	32.72	35.6
Merged-chr11-83272224-2	chr11	83271747	83272747	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14479.0	NM_001166028	237890.0	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	32.04	43.31	27.75	32.39	27.06	24.11	24.29	45.1	23.11
Merged-chr10-81406813-2	chr10	81406337	81407337	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026756, intron 6 of 8)	intron (NM_026756, intron 6 of 8)	-2738.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	18.31	19.35	12.02	36.43	25.19	14.47	23.24	20.34	18.74
Merged-chr4-155571605-2	chr4	155571106	155572106	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355599, intron 1 of 10)	MLT1B|LTR|ERVL-MaLR	7791.0	NM_001355599	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	6.29	9.22	4.62	6.75	6.06	14.47	21.12	5.31	3.75
Merged-chr10-13948383-1	chr10	13947883	13948883	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17692.0	NM_001358783	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	6.29	5.53	8.32	6.75	1.4	6.43	6.34	4.42	6.25
Merged-chr3-79202398-2	chr3	79201917	79202917	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10502.0	NR_045502	70924.0	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	4.58	2.76	2.77	7.42	6.06	4.02	3.17	3.54	4.37
Merged-chr6-54034618-2	chr6	54034123	54035123	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5309.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.58	2.76	1.85	4.05	1.87	0.0	3.17	7.07	6.87
Merged-chr2-58189130-1	chr2	58188630	58189630	+	588.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC1|LINE|L1	25156.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	1.72	4.15	7.4	6.07	4.2	3.22	1.06	4.86	5.0
Merged-chr9-106319313-1	chr9	106318813	106319813	+	588.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027354, intron 9 of 10)	intron (NM_027354, intron 9 of 10)	38252.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	17.73	23.04	27.75	17.54	17.73	25.72	53.87	49.08	43.72
Merged-chr8-90793889-1	chr8	90793389	90794389	+	588.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34946.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.72	3.23	1.85	1.35	0.0	3.22	2.11	1.33	5.62
Merged-chr9-75361950-3	chr9	75361469	75362469	+	588.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14211.0	NM_013479	12049.0	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	6.29	2.3	1.85	2.7	1.87	4.82	0.0	1.33	0.0
Merged-chr5-121388208-2	chr5	121387723	121388723	+	588.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2608.0	NM_172275	231712.0	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	80.66	83.4	60.12	80.97	69.51	62.7	68.65	102.58	68.7
Merged-chr5-32742307-2	chr5	32741801	32742801	+	588.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_001347332, exon 3 of 9)	5' UTR (NM_001347332, exon 3 of 9)	4041.0	NM_001347332	320951.0	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	10.3	6.45	3.7	9.45	7.93	8.84	15.84	11.05	6.25
Merged-chr10-23786183-1	chr10	23785683	23786683	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037680)	promoter-TSS (NR_037680)	-362.0	NR_037681	100529075.0		NR_037681	ENSMUSG00000080486	Snord100	MBII-429|Z51	small nucleolar RNA, C/D box 100	snoRNA	22.31	25.34	18.5	23.62	17.26	26.53	28.52	22.99	14.99
Merged-chr2-152821209-1	chr2	152820709	152821709	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009743, intron 2 of 2)	intron (NM_009743, intron 2 of 2)	7280.0	NR_149254	12048.0	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	8.58	9.22	10.17	9.45	7.93	9.65	6.34	3.1	8.12
Merged-chr10-34215823-1	chr10	34215323	34216323	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8272.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	12.59	13.36	9.25	10.8	4.67	16.88	12.67	9.29	1.25
Merged-chr2-172831296-1	chr2	172830796	172831796	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109025.0	NM_007557	12162.0	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	3.43	1.38	5.55	2.7	0.47	8.84	2.11	0.0	3.75
Merged-chr11-96784991-1	chr11	96784491	96785491	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4145.0	NM_007622	12412.0	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	3.43	3.23	5.55	5.4	2.8	2.41	0.0	0.44	8.74
Merged-chr5-105711622-1	chr5	105711122	105712122	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	10812.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	15.45	10.6	16.65	6.07	4.67	6.43	17.96	7.96	5.0
Merged-chr8-105305789-2	chr8	105305269	105306269	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_148952)	TTS (NM_148952)	168.0	NM_172760	234683.0	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	13.73	16.59	29.6	10.12	4.67	13.66	12.67	21.22	5.62
Merged-chr9-21032085-1	chr9	21031585	21032585	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008319)	promoter-TSS (NM_008319)	47.0	NM_008319	15898.0	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	19.45	13.36	11.1	19.57	13.53	21.7	30.63	16.8	18.11
Merged-chr8-110950491-1	chr8	110949991	110950991	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009179, intron 1 of 6)	intron (NM_009179, intron 1 of 6)	30626.0	NM_009179	20444.0	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	5.15	1.38	2.77	3.37	5.6	8.04	2.11	1.33	4.37
Merged-chr2-116063065-1	chr2	116062565	116063565	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136072, intron 2 of 12)	intron (NM_001136072, intron 2 of 12)	1554.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	1.72	0.92	2.77	4.05	2.33	3.22	0.0	0.0	3.75
Merged-chr5-30851005-1	chr5	30850505	30851505	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	-10802.0	NM_001310516	100732.0	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	44.62	44.24	62.9	33.74	37.32	60.28	43.3	38.91	36.22
Merged-chr15-8682719-1	chr15	8682219	8683219	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 3 of 9)	intron (NM_148938, intron 3 of 9)	28088.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	11.44	28.57	12.95	8.77	7.46	4.82	12.67	12.38	12.49
Merged-chr9-32211277-1	chr9	32210777	32211777	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195632, intron 10 of 21)	MTC|LTR|ERVL-MaLR	-12972.0	NM_177379	330914.0	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	6.29	10.14	9.25	4.72	6.53	14.47	6.34	2.21	8.74
Merged-chr4-55353190-1	chr4	55352690	55353690	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009011, intron 1 of 9)	intron (NM_009011, intron 1 of 9)	3148.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	16.02	15.21	11.1	8.77	16.79	8.84	31.69	24.76	21.23
Merged-chr16-30309650-1	chr16	30309150	30310150	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1131.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	4.58	1.38	5.55	5.4	3.27	3.22	2.11	0.88	2.5
Merged-chr18-25540647-1	chr18	25540147	25541147	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362322, intron 2 of 12)	intron (NM_001362322, intron 2 of 12)	139101.0	NM_001362337	108013.0	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	4.0	1.84	0.92	1.35	1.4	9.65	3.17	0.88	1.25
Merged-chr1-184610470-1	chr1	184609970	184610970	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52779.0	NR_040472	73590.0	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.0	5.99	0.0	10.8	7.46	3.22	3.17	4.86	1.25
Merged-chr17-5688367-1	chr17	5687867	5688867	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	-110290.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	6.29	5.53	8.32	8.77	3.27	4.82	4.22	7.07	4.37
Merged-chr13-99230734-1	chr13	99230234	99231234	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004149, intron 2 of 4)	intron (NM_001004149, intron 2 of 4)	45911.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	18.88	15.67	15.72	18.22	7.0	12.86	17.96	14.59	8.74
Merged-chr17-87265134-1	chr17	87264634	87265634	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176808, intron 1 of 4)	intron (NM_176808, intron 1 of 4)	813.0	NM_176808	193813.0	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	98.39	115.66	109.14	129.55	124.09	77.97	125.69	136.19	83.69
Merged-chr9-115492659-1	chr9	115492159	115493159	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	110840.0	NR_130329	100316675.0		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	5.15	2.76	1.85	6.07	4.67	3.22	7.39	1.77	2.5
Merged-chr1-54690798-1	chr1	54690298	54691298	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 16 of 27)	intron (NM_001081433, intron 16 of 27)	-133114.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	9.15	8.75	11.1	19.57	7.93	15.27	6.34	2.65	2.5
Merged-chr2-93477660-2	chr2	93477156	93478156	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14706.0	NM_001136055	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	1.72	3.23	3.7	2.02	2.33	2.41	1.06	1.77	2.5
Merged-chr15-73062513-1	chr15	73062013	73063013	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1309.0	NM_001164643	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	2.29	8.29	2.77	4.05	5.6	12.86	7.39	13.27	16.86
Merged-chr1-36129966-1	chr1	36129466	36130466	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14347.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	66.36	36.4	41.62	247.62	233.72	206.57	146.81	197.65	99.3
Merged-chr1-40786275-1	chr1	40785775	40786775	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172499, intron 2 of 5)	intron (NM_172499, intron 2 of 5)	4382.0	NM_172499	211798.0	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	1.72	5.07	0.0	6.75	7.46	12.86	3.17	4.86	7.49
Merged-chr10-31544381-1	chr10	31543881	31544881	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146349, intron 1 of 5)	L1M5|LINE|L1	65344.0	NM_001146349	268291.0	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	10.87	11.06	8.32	10.12	5.13	1.61	5.28	5.75	1.25
Merged-chr7-78924501-1	chr7	78924001	78925001	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10266.0	NM_001113527	57444.0	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	5.72	0.46	4.62	4.05	1.4	4.82	0.0	0.0	2.5
Merged-chr15-66286692-1	chr15	66286192	66287192	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_152923)	promoter-TSS (NM_152923)	-468.0	NM_152923	110862.0	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.43	1.38	1.85	4.05	0.93	0.0	3.17	1.33	4.37
Merged-chr11-77463033-1	chr11	77462533	77463533	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_139130)	promoter-TSS (NM_139130)	-880.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.29	2.76	0.0	2.02	4.2	1.61	4.22	1.77	3.12
Merged-chr4-99062179-2	chr4	99061663	99062663	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026082, intron 11 of 47)	L1MB8|LINE|L1	31209.0	NM_013913	30924.0	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	17.73	23.5	38.85	20.92	14.0	22.51	35.91	45.1	24.98
Merged-chr14-118950319-1	chr14	118949819	118950819	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008929, intron 1 of 11)	intron (NM_008929, intron 1 of 11)	12387.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	4.0	3.69	5.55	16.87	7.93	11.25	8.45	3.98	9.37
Merged-chr3-27317701-1	chr3	27317201	27318201	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009425, intron 1 of 4)	GA-rich|Low_complexity|Low_complexity	624.0	NM_009425	22035.0	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	29.17	41.93	40.7	51.28	40.12	47.42	45.42	62.35	29.98
Merged-chr16-55933817-1	chr16	55933317	55934317	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159366, intron 1 of 4)	intron (NM_001159366, intron 1 of 4)	1031.0	NM_001159364	74201.0	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	17.16	15.67	25.9	23.62	19.13	8.84	25.35	25.65	14.36
Merged-chr15-99771623-1	chr15	99771123	99772123	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028015, intron 1 of 9)	intron (NM_028015, intron 1 of 9)	892.0	NM_028015	71949.0	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	11.44	4.15	9.25	23.62	21.93	27.33	29.57	8.84	9.99
Merged-chrX-167049899-1	chrX	167049399	167050399	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20471.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	16.02	20.74	9.25	24.96	20.53	14.47	16.9	23.43	18.74
Merged-chr16-25597613-1	chr16	25597113	25598113	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-86152.0	NM_001127259	22061.0	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	1.72	2.3	1.85	2.7	8.4	8.84	3.17	7.96	3.75
Merged-chr17-27961939-1	chr17	27961439	27962439	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	52633.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	49.77	49.76	52.72	56.68	44.78	33.76	16.9	23.43	24.36
Merged-chr10-12956013-1	chr10	12955513	12956513	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029075, intron 1 of 2)	intron (NM_029075, intron 1 of 2)	8246.0	NM_029075	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	9.15	15.21	22.2	8.77	6.06	12.86	13.73	12.82	13.74
Merged-chr5-117149224-1	chr5	117148724	117149724	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081308, intron 1 of 19)	intron (NM_001081308, intron 1 of 19)	15636.0	NM_183306	330177.0	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	5.15	4.61	1.85	12.14	7.0	4.82	11.62	13.27	3.75
Merged-chrY-897571-1	chrY	897071	898071	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011419)	promoter-TSS (NM_011419)	-217.0	NM_011419	20592.0	Mm.262676	NM_011419	ENSMUSG00000056673	Kdm5d	HY|Jarid1d|Smcy	lysine (K)-specific demethylase 5D	protein-coding	30.32	52.07	27.75	35.76	33.12	36.17	58.09	50.41	16.86
Merged-chr12-99240262-1	chr12	99239762	99240762	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-77454.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	5.15	7.37	0.0	5.4	2.8	6.43	3.17	5.31	2.5
Merged-chr5-30652386-1	chr5	30651886	30652886	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175675, intron 1 of 5)	RMER17C|LTR|ERVK	4447.0	NM_175675	74919.0	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	72.08	66.81	40.7	122.8	144.15	114.14	78.16	53.94	23.11
Merged-chr12-35828031-1	chr12	35827531	35828531	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-97590.0	NM_207531	403205.0	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	6.29	7.83	11.1	12.14	5.13	1.61	8.45	2.21	1.25
Merged-chr5-117424226-1	chr5	117423726	117424726	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312914, intron 1 of 19)	intron (NM_001312914, intron 1 of 19)	10224.0	NM_001312914	333050.0	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	8.01	6.91	3.7	4.72	7.93	4.02	8.45	6.19	7.49
Merged-chr10-127746430-1	chr10	127745930	127746930	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_198035, exon 2 of 2)	3' UTR (NM_198035, exon 2 of 2)	5368.0	NM_007412	11536.0	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	20.02	17.05	27.75	20.24	7.46	17.68	45.42	34.93	23.73
Merged-chr10-128673228-1	chr10	128672728	128673728	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173733, intron 1 of 3)	intron (NM_173733, intron 1 of 3)	690.0	NM_173733	211389.0	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	6.86	5.99	3.7	11.47	9.8	4.02	12.67	4.86	8.12
Merged-chr12-102377893-1	chr12	102377393	102378393	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177620, intron 7 of 9)	intron (NM_177620, intron 7 of 9)	61920.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	14.3	13.82	24.05	26.31	14.93	32.15	22.18	15.48	9.37
Merged-chr14-49022443-2	chr14	49021911	49022911	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207214, intron 13 of 17)	L2a|LINE|L2	-44138.0	NM_001360070	74385.0	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	8.58	11.52	10.17	16.87	5.6	6.43	14.79	10.17	6.25
Merged-chr3-89385242-1	chr3	89384742	89385742	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	2429.0	NM_001355212	22724.0	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	13.16	18.89	27.75	8.77	7.93	20.09	13.73	13.71	14.99
Merged-chr1-152634484-1	chr1	152633984	152634984	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001346118, intron 2 of 18)	(CAAAAA)n|Simple_repeat|Simple_repeat	-9267.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	7.44	5.53	9.25	5.4	4.67	5.63	12.67	8.4	4.37
Merged-chr3-20003017-1	chr3	20002517	20003517	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080634, intron 15 of 16)	B2_Mm1t|SINE|B2	32293.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	16.59	5.07	7.4	8.1	5.13	12.86	5.28	3.98	0.62
Merged-chr7-142375567-1	chr7	142375067	142376067	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_009983)	TTS (NM_009983)	-1821.0	NM_001347541	320802.0	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	21.17	12.9	30.52	3.37	5.6	17.68	23.24	11.05	18.74
Merged-chr4-83235725-1	chr4	83235225	83236225	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027238, intron 17 of 19)	intron (NM_027238, intron 17 of 19)	88464.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	22.88	21.2	17.57	22.27	8.4	16.08	46.47	24.32	17.49
Merged-chrX-57303675-1	chrX	57303175	57304175	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 2 of 20)	intron (NM_001358573, intron 2 of 20)	22926.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	19.45	37.78	12.95	26.31	23.33	30.54	7.39	23.43	28.1
Merged-chr12-31610517-1	chr12	31610017	31611017	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007530, intron 5 of 6)	intron (NM_007530, intron 5 of 6)	24080.0	NM_007530	12033.0	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	12.59	4.61	8.32	5.4	9.33	12.86	4.22	3.54	4.37
Merged-chr5-51552697-1	chr5	51552197	51553197	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_132764, intron 1 of 12)	intron (NR_132764, intron 1 of 12)	1224.0	NR_027710	19017.0	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	5.15	5.07	3.7	7.42	5.6	1.61	12.67	11.5	9.99
Merged-chr2-93957240-1	chr2	93956740	93957740	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145034)	promoter-TSS (NM_001145034)	-140.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	4.58	1.38	1.85	10.12	1.4	0.0	3.17	1.33	1.25
Merged-chr11-48988316-1	chr11	48987816	48988816	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011579, intron 1 of 1)	intron (NM_011579, intron 1 of 1)	3930.0	NM_011579	21822.0	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	5.15	2.76	0.0	8.77	4.67	4.82	4.22	8.4	1.25
Merged-chr9-70863615-1	chr9	70863115	70864115	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	intron (NM_001324473, intron 1 of 8)	71193.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	6.29	5.53	3.7	8.1	7.93	0.0	6.34	1.33	1.25
Merged-chr17-87617005-1	chr17	87616505	87617505	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18974.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	1.14	2.76	0.0	4.05	0.93	4.82	3.17	3.98	2.5
Merged-chr19-57072960-2	chr19	57072451	57073451	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001103177, intron 8 of 21)	intron (NM_001103177, intron 8 of 21)	46073.0	NM_001347459	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	6.86	3.69	7.4	11.47	4.67	9.65	6.34	5.75	2.5
Merged-chr8-120821541-3	chr8	120821020	120822020	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	82881.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	11.44	4.15	7.4	7.42	5.13	6.43	1.06	2.65	3.75
Merged-chr13-98778092-1	chr13	98777592	98778592	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	37357.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	12.01	16.59	19.42	21.59	17.73	10.45	19.01	8.84	9.99
Merged-chr9-13484690-1	chr9	13484190	13485190	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53329.0	NR_028271	18689.0	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	9.15	17.51	13.87	14.84	21.93	8.84	5.28	5.31	11.24
Merged-chr13-109610073-1	chr13	109609573	109610573	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	285329.0	NR_030644	100124489.0		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	1.72	4.61	1.85	4.05	1.87	0.8	4.22	6.19	1.25
Merged-chr2-156960123-1	chr2	156959623	156960623	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355394, intron 1 of 15)	Lx3_Mus|LINE|L1	31580.0	NM_001355391	29812.0	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	5.72	1.38	0.0	3.37	1.4	5.63	3.17	0.0	6.25
Merged-chr17-84096580-1	chr17	84096080	84097080	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	17920.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	32.61	35.48	24.05	43.18	34.99	49.83	25.35	24.32	23.73
Merged-chr3-90617719-1	chr3	90617219	90618219	+	588.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	4825.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	4.0	1.38	3.7	2.02	3.73	0.0	4.22	5.31	2.5
Merged-chr4-132065844-1	chr4	132065344	132066344	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	6253.0	NM_183428	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	8.01	5.99	10.17	10.12	3.27	5.63	7.39	6.63	0.0
Merged-chr4-105378012-1	chr4	105377512	105378512	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	220665.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	1.14	0.92	6.47	5.4	5.13	6.43	3.17	2.65	3.75
Merged-chr14-25463022-1	chr14	25462522	25463522	+	588.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 1 of 23)	intron (NM_183208, intron 1 of 23)	3837.0	NM_183208	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	21.74	17.05	10.17	19.57	15.86	31.35	4.22	2.65	2.5
Merged-chr9-65539157-1	chr9	65538657	65539657	+	588.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	40930.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	60.07	41.93	52.72	44.53	15.86	35.37	62.31	43.77	37.47
Merged-chr3-82362590-2	chr3	82362085	82363085	+	587.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356457, intron 3 of 13)	ORR1D2|LTR|ERVL-MaLR	4398.0	NM_001356457	213582.0	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	2.86	5.99	9.25	2.02	1.4	3.22	2.11	3.54	7.49
Merged-chr1-26687469-2	chr1	26686986	26687986	+	587.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-26.0	NM_001033764	210940.0	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	36.04	30.41	58.27	12.82	24.26	22.51	10.56	11.5	18.11
Merged-chr7-122405059-2	chr7	122404589	122405589	+	587.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	115964.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	22.31	17.97	31.45	12.14	12.13	17.68	14.79	13.27	12.49
Merged-chr8-83451197-2	chr8	83450663	83451663	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039137, intron 1 of 3)	intron (NM_001039137, intron 1 of 3)	7233.0	NM_001039137	56367.0	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	1.72	3.69	1.85	2.02	2.8	3.22	2.11	3.54	5.0
Merged-chr10-44533484-1	chr10	44532984	44533984	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74736.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	9.15	7.83	12.95	14.17	9.8	7.23	8.45	12.38	9.99
Merged-chr10-30550229-1	chr10	30549729	30550729	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358806, intron 9 of 10)	L1MB7|LINE|L1	50471.0	NM_028604	73681.0	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	5.15	3.23	11.1	5.4	5.13	3.22	4.22	5.31	6.25
Merged-chr7-34811783-1	chr7	34811283	34812283	+	587.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175140, intron 1 of 3)	CpG	928.0	NM_175140	68947.0	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	1.72	0.92	2.77	0.0	2.8	0.0	3.17	1.33	3.75
Merged-chr1-156449223-1	chr1	156448723	156449723	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009230, intron 3 of 15)	intron (NM_009230, intron 3 of 15)	25105.0	NM_009230	20652.0	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	25.17	32.25	20.35	29.01	36.85	43.4	19.01	12.82	12.49
Merged-chr14-72644784-2	chr14	72644275	72645275	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207636, intron 3 of 25)	intron (NM_207636, intron 3 of 25)	65228.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	14.87	12.9	1.85	7.42	3.73	4.82	17.96	11.5	17.49
Merged-chr14-103045545-2	chr14	103045045	103046045	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1467.0	NM_008392	16365.0	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	5.72	1.84	1.85	2.02	2.33	4.02	8.45	3.1	1.25
Merged-chr14-70775014-2	chr14	70774494	70775494	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010071, intron 1 of 4)	intron (NM_010071, intron 1 of 4)	613.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	68.65	75.11	102.67	56.0	60.18	82.79	70.76	84.9	89.93
Merged-chr6-48582168-2	chr6	48581662	48582662	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7283.0	NM_183309	330305.0	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	6.29	12.9	11.1	4.05	6.06	1.61	6.34	7.52	7.49
Merged-chr15-27726518-1	chr15	27726018	27727018	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-44976.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	20.02	13.36	14.8	10.8	15.39	22.51	6.34	4.86	6.25
Merged-chrX-48144203-1	chrX	48143703	48144703	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2233.0	NM_001313749	74131.0	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	34.9	32.72	19.42	31.04	45.72	38.58	30.63	30.51	21.23
Merged-chr11-58360096-1	chr11	58359596	58360596	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18936.0	NM_027339	70163.0	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	4.0	4.61	5.55	5.4	4.67	3.22	1.06	1.77	1.25
Merged-chr1-85593215-1	chr1	85592715	85593715	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030194, intron 3 of 11)	intron (NM_030194, intron 3 of 11)	5595.0	NM_030194	109032.0	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	24.03	19.35	24.05	42.51	23.33	40.99	0.0	0.44	26.23
Merged-chr13-24641676-2	chr13	24641166	24642166	+	587.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080381, intron 1 of 14)	intron (NM_001080381, intron 1 of 14)	3018.0	NM_029679	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	8.58	5.07	3.7	11.47	7.0	6.43	6.34	4.86	5.0
Merged-chr6-39002646-1	chr6	39002146	39003146	+	587.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011539, intron 5 of 12)	intron (NM_011539, intron 5 of 12)	64940.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	41.76	36.86	22.2	38.46	26.12	32.96	30.63	43.77	22.48
Merged-chr3-89340689-3	chr3	89340169	89341169	+	587.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037722, intron 20 of 22)	intron (NM_001037722, intron 20 of 22)	-2641.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	1.72	0.46	1.85	5.4	0.93	4.02	3.17	0.44	0.0
Merged-chr19-47837350-3	chr19	47836863	47837863	+	587.277771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-2.0	NM_027559	100048534.0	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	5.72	4.15	5.55	7.42	0.93	1.61	5.28	2.21	6.25
Merged-chrX-74424201-1	chrX	74423701	74424701	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001136067)	promoter-TSS (NM_001136067)	-411.0	NM_001161421	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	20.59	29.95	14.8	31.04	30.79	34.56	17.96	12.82	16.24
Merged-chr8-3670583-2	chr8	3670079	3671079	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001357661)	TTS (NM_001357661)	1812.0	NM_001357661	100503924.0	Mm.415621	NM_001357661	ENSMUSG00000089665	Fcor	2400009B08Rik	Foxo1 corepressor	protein-coding	1.72	1.38	0.0	5.4	4.67	1.61	3.17	8.4	8.74
Merged-chr6-17800385-2	chr6	17799871	17800871	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022332, intron 1 of 15)	intron (NM_022332, intron 1 of 15)	51201.0	NM_001083315	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	26.89	40.09	24.05	16.87	30.32	28.94	28.52	38.91	19.36
Merged-chr1-9746679-2	chr1	9746182	9747182	+	587.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040462)	promoter-TSS (NR_040462)	-966.0	NR_040462	73331.0	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	29.17	58.52	51.8	24.96	27.52	36.97	58.09	59.69	50.59
Merged-chrX-169136026-1	chrX	169135526	169136526	+	587.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	L1Md_A|LINE|L1	23148.0	NM_001287530	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	8.58	5.53	0.92	2.02	3.73	0.0	13.73	4.86	6.25
Merged-chr19-41999312-2	chr19	41998802	41999802	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	17539.0	NM_145500	226122.0	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	60.07	54.83	47.17	66.8	58.31	71.54	61.26	59.69	59.95
Merged-chr17-57246105-1	chr17	57245605	57246605	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030084, intron 2 of 16)	Lx8|LINE|L1	1365.0	NM_001308074	78308.0	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	6.29	7.83	23.12	6.07	8.86	11.25	8.45	8.4	9.37
Merged-chr2-44975488-2	chr2	44974972	44975972	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47705.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.15	3.69	5.55	3.37	0.47	2.41	3.17	0.0	4.37
Merged-chr9-99450108-1	chr9	99449608	99450608	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6135.0	NM_001165957	623534.0	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	5.72	3.69	4.62	3.37	2.8	4.82	1.06	1.77	0.0
Merged-chr13-23732563-1	chr13	23732063	23733063	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	19.45	14.28	5.55	12.14	4.2	8.84	16.9	10.17	13.74
Merged-chr3-136793723-1	chr3	136793223	136794223	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008913, intron 1 of 13)	intron (NM_008913, intron 1 of 13)	123657.0	NM_001293622	19055.0	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	7.44	3.23	6.47	4.72	6.53	4.82	10.56	7.52	6.87
Merged-chr6-30173409-1	chr6	30172909	30173909	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126541, intron 1 of 1)	CpG	716.0	NR_126540	101447999.0		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	4.0	1.38	5.55	2.02	3.73	1.61	3.17	0.88	5.0
Merged-chr5-142074965-1	chr5	142074465	142075465	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177879, intron 22 of 44)	intron (NM_177879, intron 22 of 44)	-326532.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	2.29	1.38	9.25	2.7	6.53	9.65	11.62	7.07	1.25
Merged-chr1-127850257-1	chr1	127849757	127850757	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9967.0	NM_011737	22625.0	Mm.246566	NM_011737	ENSMUSG00000051590	Map3k19	Ysk4	mitogen-activated protein kinase kinase kinase 19	protein-coding	10.3	9.68	0.92	9.45	11.66	20.9	11.62	14.59	11.87
Merged-chr4-132899337-1	chr4	132898837	132899837	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001163792, exon 8 of 8)	3' UTR (NM_001163792, exon 8 of 8)	-14879.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	2.86	2.3	7.4	3.37	3.73	2.41	24.29	13.71	9.99
Merged-chr1-80723439-1	chr1	80722939	80723939	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	intron (NM_175291, intron 1 of 55)	35114.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	13.16	8.29	4.62	8.1	11.2	8.04	10.56	7.52	9.37
Merged-chr9-81626087-1	chr9	81625587	81626587	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5843.0	NR_040394	319405.0	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	2.86	2.3	0.0	0.67	8.4	3.22	2.11	8.84	3.12
Merged-chr17-47009083-1	chr17	47008583	47009583	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146078, intron 1 of 46)	intron (NM_146078, intron 1 of 46)	1449.0	NM_146078	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	83.52	69.12	31.45	66.12	41.99	45.82	46.47	38.47	28.1
Merged-chr3-9705212-1	chr3	9704712	9705712	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95127.0	NM_133218	170753.0	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	1.72	1.38	7.4	1.35	3.27	3.22	1.06	2.21	6.25
Merged-chr19-34283831-1	chr19	34283331	34284331	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_007987	14102.0	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.29	0.92	3.7	2.7	2.8	0.0	22.18	16.8	5.62
Merged-chr8-126464183-1	chr8	126463683	126464683	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159907, intron 4 of 29)	RMER20A|LTR|ERVK	10882.0	NM_001159907	212728.0	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	3.43	2.3	1.85	8.77	1.4	1.61	6.34	2.65	2.5
Merged-chr2-12002485-1	chr2	12001985	12002985	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	224732.0	NM_177268	320816.0	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	4.0	3.69	1.85	1.35	3.27	3.22	3.17	0.88	1.25
Merged-chr1-152512363-1	chr1	152511863	152512863	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER13A2|LTR|ERVK	112496.0	NM_177756	269132.0	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	5.15	2.76	7.4	6.07	6.06	4.82	3.17	2.21	2.5
Merged-chr12-69185557-1	chr12	69185057	69186057	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_146035, exon 1 of 1)	exon (NM_146035, exon 1 of 1)	1399.0	NM_146035	217664.0	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	24.6	22.12	20.35	29.69	16.79	32.15	19.01	13.27	18.74
Merged-chr10-8370158-2	chr10	8369668	8370668	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	148657.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	6.86	6.45	3.7	7.42	12.6	15.27	10.56	6.19	0.0
Merged-chr15-101971953-1	chr15	101971453	101972453	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17666.0	NM_212487	332131.0	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	8.01	9.22	5.55	8.1	6.06	11.25	6.34	5.31	3.12
Merged-chr2-118703428-1	chr2	118702928	118703928	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081971, exon 1 of 1)	exon (NM_001081971, exon 1 of 1)	535.0	NM_001081971	383787.0	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	5.15	1.84	3.7	4.05	3.73	6.43	2.11	0.0	6.25
Merged-chr3-75861843-1	chr3	75861343	75862343	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	95106.0	NM_175193	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	9.72	1.84	9.25	4.05	1.87	2.41	1.06	0.88	1.87
Merged-chr7-123360383-1	chr7	123359883	123360883	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	9532.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	18.31	16.13	30.52	19.57	19.13	18.49	30.63	16.36	21.86
Merged-chr12-51790530-1	chr12	51790030	51791030	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_144788, exon 14 of 43)	exon (NM_144788, exon 14 of 43)	39006.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	6.86	13.82	5.55	6.07	6.53	12.86	5.28	12.38	6.25
Merged-chr4-3083455-1	chr4	3082955	3083955	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-88628.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	5.72	7.83	17.57	4.05	4.67	7.23	6.34	2.65	10.62
Merged-chr11-111445001-1	chr11	111444501	111445501	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	378837.0	NM_008425	16518.0	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	6.29	6.45	9.25	6.07	5.6	6.43	8.45	3.54	7.49
Merged-chr11-95402966-1	chr11	95402466	95403466	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11117.0	NM_025287	20747.0	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	22.31	13.82	8.32	10.12	0.93	5.63	8.45	2.21	0.62
Merged-chr8-88242056-1	chr8	88241556	88242556	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 2 of 11)	intron (NM_001164499, intron 2 of 11)	-30347.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	4.58	5.99	3.7	6.07	7.0	4.82	14.79	12.82	14.36
Merged-chr2-29817809-2	chr2	29817296	29818296	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011989)	TTS (NM_011989)	-9593.0	NM_026615	68205.0	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	4.58	1.38	1.85	4.05	3.73	3.22	2.11	2.21	2.5
Merged-chr14-66240543-1	chr14	66240043	66241043	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	-26719.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	20.59	21.66	12.95	10.12	12.13	14.47	15.84	11.05	10.62
Merged-chr2-93459915-1	chr2	93459415	93460415	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040532, intron 2 of 4)	intron (NR_040532, intron 2 of 4)	1936.0	NM_001271461	12521.0	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	79.52	65.89	64.75	84.34	45.72	28.94	40.14	30.51	14.99
Merged-chr5-151394182-1	chr5	151393682	151394682	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045699, intron 3 of 3)	intron (NR_045699, intron 3 of 3)	-12322.0	NR_131166	100042166.0	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	5.15	9.22	5.55	8.1	8.86	8.84	8.45	14.15	10.62
Merged-chr17-83297638-1	chr17	83297138	83298138	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-53293.0	NM_001114361	78798.0	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	8.58	7.37	1.85	7.42	1.4	3.22	6.34	1.33	6.25
Merged-chr19-61059192-1	chr19	61058692	61059692	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131953, intron 3 of 6)	RLTR12B|LTR|ERVK	81648.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	7.44	5.99	1.85	6.07	4.2	6.43	3.17	2.21	3.75
Merged-chr13-56152007-2	chr13	56151520	56152520	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16470.0	NM_001159513	26914.0	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	14.87	8.29	4.62	3.37	1.4	8.04	10.56	6.19	9.99
Merged-chr6-148579080-1	chr6	148578580	148579580	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35229.0	NR_045867	622319.0	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	19.45	19.81	17.57	21.59	13.06	21.7	40.14	26.09	9.99
Merged-chr9-103225649-1	chr9	103225149	103226149	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133977, intron 4 of 16)	intron (NM_133977, intron 4 of 16)	4637.0	NM_133977	22041.0	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	6.86	4.61	9.25	4.72	4.67	4.82	4.22	0.0	4.37
Merged-chr3-157717679-1	chr3	157717179	157718179	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150787.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	2.29	1.38	5.55	1.35	0.93	1.61	4.22	3.1	1.87
Merged-chr2-170247851-1	chr2	170247351	170248351	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-105176.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	7.44	6.91	19.42	10.12	2.8	14.47	9.51	4.42	4.37
Merged-chr6-122864030-1	chr6	122863530	122864530	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7873.0	NM_009779	12267.0	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	23.45	24.42	17.57	41.16	21.46	46.62	29.57	13.27	16.86
Merged-chr9-40391623-1	chr9	40391123	40392123	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357617, intron 2 of 20)	intron (NM_001357617, intron 2 of 20)	-15206.0	NM_001357621	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	7.44	5.99	14.8	8.1	10.73	23.31	10.56	9.29	6.25
Merged-chr4-119223833-1	chr4	119223333	119224333	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5616.0	NM_029198	75180.0	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	4.0	0.92	3.7	1.35	1.4	4.02	1.06	1.77	3.75
Merged-chr10-125224777-1	chr10	125224277	125225277	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001358915, exon 6 of 6)	3' UTR (NM_001358915, exon 6 of 6)	84039.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	5.72	2.76	5.55	6.75	7.93	0.0	7.39	1.77	1.25
Merged-chr2-14208784-1	chr2	14208284	14209284	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081310, intron 3 of 3)	MIR|SINE|MIR	-20630.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	19.45	14.75	6.47	18.22	13.06	16.08	8.45	11.05	11.24
Merged-chr8-120471357-2	chr8	120470845	120471845	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17521.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	1.14	2.76	0.0	1.35	0.47	3.22	2.11	0.44	1.25
Merged-chr15-36888550-1	chr15	36888050	36889050	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-91621.0	NM_001253806	22631.0	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	4.58	2.76	0.92	5.4	0.93	4.02	2.11	0.44	1.25
Merged-chr17-25895659-1	chr17	25895159	25896159	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	6568.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	8.58	2.76	16.65	9.45	4.2	8.04	5.28	2.21	12.49
Merged-chr9-116217273-1	chr9	116216773	116217773	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28093.0	NR_152204	100043817.0	Mm.404276	NR_152204		Gm4668	-	predicted gene 4668	ncRNA	10.87	13.82	5.55	10.8	13.06	12.86	9.51	3.98	1.87
Merged-chr6-87552060-1	chr6	87551560	87552560	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18801.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	31.46	21.66	12.95	41.16	32.19	22.51	47.53	45.1	18.11
Merged-chr16-34667173-1	chr16	34666673	34667673	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030744, intron 2 of 5)	intron (NM_030744, intron 2 of 5)	15962.0	NM_030744	76378.0	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	4.58	0.46	3.7	2.7	1.4	0.8	1.06	1.33	1.25
Merged-chr1-92037261-1	chr1	92036761	92037761	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207225, intron 3 of 26)	intron (NM_207225, intron 3 of 26)	143080.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	2.86	4.15	10.17	4.72	3.73	4.82	5.28	3.54	3.75
Merged-chr17-35440116-1	chr17	35439616	35440616	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001201460, exon 3 of 7)	exon (NM_001201460, exon 3 of 7)	949.0	NM_001201460	110558.0	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	10.3	5.07	4.62	7.42	1.4	0.0	25.35	15.92	1.25
Merged-chr7-122520928-1	chr7	122520428	122521428	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001316672, intron 7 of 16)	intron (NM_001316672, intron 7 of 16)	-150816.0	NM_019430	54376.0	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	37.76	29.49	23.12	12.14	3.73	6.43	5.28	7.07	2.5
Merged-chr12-102579268-1	chr12	102578768	102579768	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172584, intron 7 of 9)	intron (NM_172584, intron 7 of 9)	24327.0	NM_007693	12652.0	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	5.15	0.92	0.0	7.42	0.93	3.22	1.06	1.77	5.62
Merged-chr2-164835487-1	chr2	164834987	164835987	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001038492, intron 6 of 14)	intron (NM_001038492, intron 6 of 14)	1714.0	NM_008906	19025.0	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	41.19	27.65	39.77	62.07	41.99	57.87	74.99	65.88	29.35
Merged-chr5-64291038-1	chr5	64290538	64291538	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 11 of 18)	L1MB8|LINE|L1	60681.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	10.3	13.36	13.87	12.14	11.66	12.06	15.84	12.38	20.61
Merged-chr10-89680796-1	chr10	89680296	89681296	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198021, intron 1 of 17)	intron (NM_198021, intron 1 of 17)	5498.0	NM_001358843	213326.0	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	9.15	5.99	7.4	3.37	7.93	8.04	8.45	5.75	8.12
Merged-chr11-98923297-1	chr11	98922797	98923797	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011799, exon 12 of 12)	3' UTR (NM_011799, exon 12 of 12)	-14399.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	6.86	4.61	9.25	9.45	2.8	5.63	12.67	3.1	12.49
Merged-chr9-47711156-1	chr9	47710656	47711656	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	107052.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	14.87	34.1	16.65	20.92	25.19	42.6	34.85	23.43	25.61
Merged-chr7-19922138-1	chr7	19921638	19922638	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027514)	promoter-TSS (NM_027514)	-995.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	10.3	5.07	6.47	6.75	5.13	8.04	11.62	4.42	12.49
Merged-chr1-171358575-2	chr1	171358076	171359076	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001360824, exon 4 of 4)	3' UTR (NM_001360824, exon 4 of 4)	2222.0	NM_001033039	68874.0	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	8.58	2.76	6.47	5.4	3.73	1.61	2.11	3.1	3.12
Merged-chr13-99190746-1	chr13	99190246	99191246	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	5923.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	79.52	73.73	86.95	99.86	79.77	61.89	113.01	82.69	59.95
Merged-chr9-114752477-1	chr9	114751977	114752977	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21274.0	NM_026036	67213.0	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	33.18	27.19	24.05	32.39	14.93	24.11	60.2	46.43	16.86
Merged-chr5-34520672-1	chr5	34520172	34521172	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5112.0	NM_011893	24055.0	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	10.87	5.99	12.95	10.8	3.73	7.23	5.28	4.86	3.12
Merged-chr2-59132448-1	chr2	59131948	59132948	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	RLTR13B4|LTR|ERVK	28235.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	2.86	2.3	0.0	8.1	4.67	7.23	2.11	7.96	4.37
Merged-chr5-120793243-1	chr5	120792743	120793743	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347450, intron 2 of 5)	intron (NM_001347450, intron 2 of 5)	2287.0	NM_001347450	231699.0	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	2.29	1.38	3.7	2.7	0.47	0.0	1.06	2.65	0.0
Merged-chr6-85904934-1	chr6	85904434	85905434	+	587.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029331)	promoter-TSS (NM_029331)	4.0	NM_029331	75541.0	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	1.14	3.69	0.0	0.0	2.8	4.82	4.22	7.52	3.75
Merged-chr8-72151887-1	chr8	72151387	72152387	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001491, exon 8 of 8)	3' UTR (NM_001001491, exon 8 of 8)	-9313.0	NM_023126	17274.0	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	12.01	11.52	12.02	15.52	16.33	24.11	7.39	5.75	11.24
Merged-chr10-19580966-1	chr10	19580466	19581466	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10983.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	20.02	16.13	32.37	29.01	14.0	23.31	35.91	27.86	39.97
Merged-chr11-67637901-1	chr11	67637401	67638401	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277080, intron 3 of 12)	intron (NM_001277080, intron 3 of 12)	41346.0	NM_001277079	14457.0	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	8.01	0.0	1.85	3.37	3.27	1.61	9.51	2.21	0.0
Merged-chr16-70932993-1	chr16	70932493	70933493	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-198083.0	NR_040561	70972.0	Mm.399391	NR_040561		4931420L22Rik	-	RIKEN cDNA 4931420L22 gene	ncRNA	3.43	4.15	0.0	6.75	6.53	0.8	2.11	3.98	0.0
Merged-chr13-110431578-1	chr13	110431078	110432078	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36534.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	2.86	3.23	0.0	4.72	1.87	0.0	4.22	4.42	1.25
Merged-chr7-106429266-1	chr7	106428766	106429766	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_003967, intron 2 of 2)	L1_Mus3|LINE|L1	11807.0	NR_003967	209380.0	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	1.72	3.69	12.02	6.75	2.8	7.23	2.11	2.21	1.25
Merged-chr12-99966440-2	chr12	99965980	99966980	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164426, intron 2 of 2)	intron (NM_001164426, intron 2 of 2)	1981.0	NM_001164427	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	118.42	129.94	116.54	150.46	186.6	181.66	186.94	202.07	108.67
Merged-chr15-77305992-1	chr15	77305492	77306492	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053104, intron 1 of 13)	intron (NM_053104, intron 1 of 13)	1061.0	NM_001110827	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	9.72	5.99	9.25	9.45	15.86	15.27	11.62	2.21	15.61
Merged-chr11-121093118-1	chr11	121092618	121093618	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-11979.0	NM_145373	209588.0	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	26.89	27.65	35.15	18.22	23.79	22.51	43.3	39.35	20.61
Merged-chr14-76505526-1	chr14	76505026	76506026	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310647, intron 2 of 2)	intron (NM_001310647, intron 2 of 2)	1016.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	38.9	45.16	9.25	56.68	59.71	37.78	8.45	7.96	7.49
Merged-chr13-81801289-2	chr13	81800776	81801776	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18029.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	2.29	4.15	0.0	4.72	0.93	0.0	2.11	2.21	3.75
Merged-chr10-14293091-1	chr10	14292591	14293591	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	251945.0	NM_001002268	215798.0	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	4.58	1.38	5.55	2.02	3.27	4.82	1.06	0.44	1.25
Merged-chr12-98282798-1	chr12	98282298	98283298	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	14163.0	NM_008152	14744.0	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	88.67	41.93	39.77	68.15	29.39	46.62	51.75	44.22	44.97
Merged-chr12-75765986-2	chr12	75765484	75766484	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30255.0	NM_030750	81535.0	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	13.73	18.43	12.95	12.82	15.86	22.51	17.96	9.73	11.87
Merged-chr10-89733161-1	chr10	89732661	89733661	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001359468)	promoter-TSS (NM_001359468)	-866.0	NM_025914	67019.0	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	9.72	13.82	14.8	18.22	6.06	12.86	14.79	24.76	12.49
Merged-chr5-25760605-1	chr5	25760105	25761105	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310504, intron 1 of 10)	intron (NM_001310504, intron 1 of 10)	632.0	NM_001004365	242894.0	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	4.0	3.69	0.0	10.8	6.53	6.43	3.17	1.77	9.37
Merged-chr17-23968897-1	chr17	23968397	23969397	+	587.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6333.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	17.16	7.83	11.1	15.52	7.46	6.43	39.08	24.32	33.72
Merged-chr17-81533902-1	chr17	81533402	81534402	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	204485.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	9.15	4.61	5.55	4.05	5.13	0.0	3.17	6.19	5.62
Merged-chr1-40412583-1	chr1	40412083	40413083	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-16987.0	NM_001294171	17082.0	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.86	1.38	0.0	3.37	7.0	10.45	3.17	2.65	6.25
Merged-chr19-6489210-1	chr19	6488710	6489710	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 12 of 22)	intron (NM_001205234, intron 12 of 22)	53860.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	3.43	2.3	1.85	5.4	3.27	0.8	1.06	3.1	2.5
Merged-chr6-34352170-1	chr6	34351670	34352670	+	587.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1976.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	14.87	18.43	5.55	30.36	21.46	20.09	12.67	11.5	11.24
Merged-chr9-7553729-2	chr9	7553228	7554228	+	586.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4701.0	NM_008611	17394.0	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	4.0	2.3	9.25	4.72	3.27	3.22	3.17	0.88	8.12
Merged-chr1-165457622-2	chr1	165457124	165458124	+	586.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028759, intron 1 of 18)	intron (NM_028759, intron 1 of 18)	2839.0	NM_028759	74106.0	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	5.15	2.76	5.55	10.12	4.67	4.82	11.62	4.86	8.12
Merged-chr12-28638908-1	chr12	28638408	28639408	+	586.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-2955.0	NM_011300	20115.0	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	2.11	4.42	2.5
Merged-chr8-25627477-2	chr8	25626987	25627987	+	586.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	-13090.0	NM_001081269	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	1.14	3.69	2.77	6.75	5.13	7.23	4.22	1.77	6.25
Merged-chr16-38120701-2	chr16	38120195	38121195	+	586.599976	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347232, intron 1 of 11)	intron (NM_001347232, intron 1 of 11)	-31435.0	NR_033221	414072.0	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	12.01	4.61	9.25	10.8	8.4	12.86	10.56	4.86	12.49
Merged-chr12-76832836-1	chr12	76832336	76833336	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4631.0	NM_145927	110606.0	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	1.14	4.15	0.0	2.7	1.87	3.22	6.34	1.77	1.25
Merged-chr6-114836880-1	chr6	114836380	114837380	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	84941.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	18.88	19.35	18.5	13.49	14.46	21.7	39.08	17.24	20.61
Merged-chr16-13448541-1	chr16	13448041	13449041	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_030549)	promoter-TSS (NR_030549)	-982.0	NR_030549	100124432.0		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	11.44	2.3	0.0	1.35	3.27	0.8	6.34	1.33	8.12
Merged-chr4-141845510-1	chr4	141845010	141846010	+	586.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033875, intron 1 of 8)	intron (NM_001033875, intron 1 of 8)	849.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	2.86	1.84	3.7	5.4	1.4	1.61	3.17	1.77	1.87
Merged-chr13-107797035-1	chr13	107796535	107797535	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	MTD|LTR|ERVL-MaLR	93029.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	18.88	16.13	1.85	15.52	8.4	9.65	19.01	8.84	13.12
Merged-chr13-24634518-1	chr13	24634018	24635018	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178658, intron 1 of 13)	intron (NM_178658, intron 1 of 13)	-4130.0	NM_001080381	193385.0	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	2.86	4.61	1.85	4.05	5.6	8.84	4.22	1.77	1.87
Merged-chr8-105477187-1	chr8	105476687	105477687	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175160, intron 6 of 13)	intron (NM_175160, intron 6 of 13)	-5765.0	NM_026481	67971.0	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	1.72	2.76	0.0	5.4	1.4	2.41	0.0	0.88	5.0
Merged-chr5-130454562-1	chr5	130454062	130455062	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	5770.0	NM_021371	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	9.15	8.75	13.87	5.4	7.46	12.06	7.39	8.84	5.62
Merged-chr13-81760584-1	chr13	81760084	81761084	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22663.0	NM_007684	12626.0	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	5.72	2.3	5.55	0.0	3.73	7.23	2.11	2.21	0.0
Merged-chr3-13611041-1	chr3	13610541	13611541	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040598, intron 3 of 3)	intron (NR_040598, intron 3 of 3)	41824.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	2.29	3.23	1.85	3.37	2.33	4.82	2.11	4.86	6.87
Merged-chr1-52844443-1	chr1	52843943	52844943	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146108)	promoter-TSS (NM_146108)	-595.0	NM_146108	227095.0	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	21.74	23.96	24.97	20.24	19.13	20.9	19.01	33.6	23.73
Merged-chr1-37998580-2	chr1	37998105	37999105	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198303, intron 1 of 23)	CpG	595.0	NM_198303	226982.0	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	94.96	106.9	148.92	85.69	90.04	123.78	123.57	127.34	124.28
Merged-chr5-115544670-1	chr5	115544170	115545170	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011223, intron 2 of 10)	intron (NM_011223, intron 2 of 10)	-14797.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.0	6.45	1.85	1.35	2.33	6.43	6.34	4.42	2.5
Merged-chr14-29973375-2	chr14	29972877	29973877	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_019979, exon 4 of 5)	exon (NM_019979, exon 4 of 5)	-4960.0	NM_027493	56249.0	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	5.72	11.06	26.82	11.47	12.6	25.72	34.85	11.94	13.74
Merged-chr4-46657263-1	chr4	46656763	46657763	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7064.0	NM_198664	381605.0	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	2.86	6.45	0.0	2.02	5.13	0.0	1.06	2.21	1.87
Merged-chr11-106458732-1	chr11	106458232	106459232	+	586.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023913, intron 2 of 21)	intron (NM_023913, intron 2 of 21)	29064.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	42.9	23.04	20.35	22.27	8.4	10.45	28.52	47.75	17.49
Merged-chr13-24813661-1	chr13	24813161	24814161	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_024473)	TTS (NM_024473)	12004.0	NM_024473	79555.0	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	11.44	24.42	29.6	16.87	11.2	34.56	15.84	32.72	23.11
Merged-chr15-97667628-2	chr15	97667131	97668131	+	586.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38191.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.57	3.23	1.85	8.1	3.27	1.61	2.11	1.33	0.0
Merged-chr19-40513298-1	chr19	40512798	40513798	+	586.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009166, intron 1 of 23)	intron (NM_009166, intron 1 of 23)	438.0	NM_178362	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	10.3	12.44	3.7	29.69	10.26	9.65	14.79	9.73	4.37
Merged-chr5-63886917-2	chr5	63886402	63887402	+	586.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029554, intron 2 of 3)	intron (NM_029554, intron 2 of 3)	74407.0	NM_029554	76261.0	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	3.43	2.76	5.55	2.02	1.4	1.61	6.34	0.0	5.0
Merged-chr7-16398547-3	chr7	16398056	16399056	+	586.055542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-2640.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	23.45	8.75	21.27	28.34	14.0	34.56	13.73	15.03	21.86
Merged-chr2-163660207-1	chr2	163659707	163660707	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039390, intron 2 of 4)	intron (NM_001039390, intron 2 of 4)	1749.0	NM_001164053	18769.0	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	16.02	18.89	30.52	15.52	11.66	11.25	20.07	21.22	14.99
Merged-chr10-127002196-1	chr10	127001696	127002696	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009635, intron 1 of 19)	intron (NM_009635, intron 1 of 19)	1487.0	NM_009635	11567.0	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	4.0	0.92	1.85	1.35	4.2	8.04	2.11	2.21	1.25
Merged-chr15-35296843-1	chr15	35296343	35297343	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054049, intron 1 of 3)	CpG	731.0	NM_054049	107587.0	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	1.72	5.99	1.85	4.72	2.33	6.43	1.06	0.44	2.5
Merged-chr7-19790181-1	chr7	19789681	19790681	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161844, intron 5 of 10)	intron (NM_001161844, intron 5 of 10)	6628.0	NM_001161844	80794.0	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	2.86	3.23	1.85	5.4	0.47	4.02	7.39	0.44	0.0
Merged-chr10-80741829-1	chr10	80741329	80742329	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007460, intron 1 of 30)	CpG	446.0	NM_007460	11776.0	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	351.24	363.1	307.08	308.35	273.37	278.11	208.07	287.85	228.58
Merged-chr6-124998533-1	chr6	124998033	124999033	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	-77.0	NM_001145926	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	35.47	27.65	35.15	31.71	18.66	32.96	6.34	4.86	11.24
Merged-chr12-117747682-1	chr12	117747182	117748182	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175930, intron 25 of 27)	BGLII|LTR|ERVK	-96179.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	8.01	8.75	12.95	2.02	3.27	9.65	15.84	11.05	17.49
Merged-chr5-123019017-1	chr5	123018517	123019517	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	MIR|SINE|MIR	3943.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	18.88	19.81	22.2	22.27	19.59	31.35	19.01	16.8	9.99
Merged-chr4-136249954-1	chr4	136249454	136250454	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011542, intron 1 of 10)	intron (NM_011542, intron 1 of 10)	1997.0	NM_011542	21401.0	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	5.15	2.76	5.55	4.05	0.47	9.65	5.28	2.21	2.5
Merged-chr11-94401347-1	chr11	94400847	94401847	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-8371.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	7.44	5.07	3.7	7.42	12.13	12.86	8.45	3.54	2.5
Merged-chr4-102607031-1	chr4	102606531	102607531	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001177980, exon 10 of 10)	3' UTR (NM_001177980, exon 10 of 10)	17188.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	30.89	42.85	24.97	39.81	26.59	33.76	11.62	6.19	9.37
Merged-chr11-53853803-1	chr11	53853303	53854303	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 1 of 3)	intron (NR_033332, intron 1 of 3)	5453.0	NR_033332	622459.0	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115	predicted gene 12216	ncRNA	10.87	6.91	16.65	9.45	6.06	6.43	19.01	13.71	7.49
Merged-chr11-44375608-1	chr11	44375108	44376108	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-24455.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	9.15	11.52	13.87	8.1	6.06	17.68	6.34	4.86	1.25
Merged-chr9-59293710-2	chr9	59293224	59294224	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359282, intron 1 of 6)	intron (NM_001359282, intron 1 of 6)	2152.0	NM_028121	72141.0	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	28.03	29.49	27.75	41.16	26.12	45.01	55.98	54.83	39.35
Merged-chr18-53855117-2	chr18	53854649	53855649	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6964.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	11.44	5.99	11.1	12.82	7.0	8.04	4.22	2.21	6.25
Merged-chr12-65074812-1	chr12	65074312	65075312	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	-794.0	NM_178912	104806.0	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	133.86	230.39	110.99	170.03	217.86	179.24	259.82	354.18	131.78
Merged-chr1-87853896-1	chr1	87853396	87854396	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_136921, intron 1 of 1)	CpG	403.0	NR_136921	100503175.0	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	74.94	45.16	47.17	105.93	69.98	102.88	77.1	42.01	36.22
Merged-chr15-83034104-1	chr15	83033604	83034604	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271411)	promoter-TSS (NM_001271411)	-707.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	46.91	47.46	54.57	36.43	28.46	58.68	79.21	53.06	54.96
Merged-chr10-95766768-1	chr10	95766268	95767268	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-173895.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	9.15	4.15	3.7	2.7	2.33	4.02	5.28	4.42	3.75
Merged-chr13-13349516-1	chr13	13349016	13350016	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44108.0	NM_031999	83924.0	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	2.86	2.76	0.0	0.67	1.87	1.61	2.11	1.77	0.0
Merged-chr8-72586172-1	chr8	72585672	72586672	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_151663, exon 3 of 3)	non-coding (NR_151663, exon 3 of 3)	14349.0	NM_001357279	74166.0	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|SPR-27|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	10.3	23.5	40.7	6.07	1.87	10.45	26.4	28.3	14.99
Merged-chr7-7187623-1	chr7	7187123	7188123	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	16270.0	NM_146179	232854.0	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	5.15	9.22	8.32	5.4	6.06	8.04	3.17	7.96	7.49
Merged-chr5-8841050-1	chr5	8840550	8841550	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011075, intron 21 of 27)	intron (NM_011075, intron 21 of 27)	-42527.0	NR_152132	330031.0	Mm.389059	NR_152132		Gm5106	A230021K14|EG330031	predicted gene 5106	ncRNA	2.86	3.69	1.85	1.35	3.27	4.02	3.17	2.21	2.5
Merged-chr7-38267145-1	chr7	38266645	38267645	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025390, intron 3 of 6)	intron (NM_025390, intron 3 of 6)	4203.0	NM_025390	66161.0	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	6.86	3.23	3.7	3.37	4.2	2.41	8.45	1.33	6.25
Merged-chr1-82290957-1	chr1	82290457	82291457	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_010570, exon 1 of 2)	5' UTR (NM_010570, exon 1 of 2)	482.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	3.43	1.84	1.85	2.02	1.4	0.0	6.34	2.21	5.62
Merged-chr13-32866600-1	chr13	32866100	32867100	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15415.0	NM_025429	66222.0	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	2.86	5.07	5.55	6.07	0.47	1.61	2.11	0.88	3.75
Merged-chr2-104069971-1	chr2	104069471	104070471	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1039.0	NM_181858	333883.0	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	2.29	2.3	1.85	2.7	0.0	3.22	2.11	0.44	2.5
Merged-chr8-119835162-1	chr8	119834662	119835662	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 2 of 3)	intron (NM_028071, intron 2 of 3)	5417.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	11.44	6.91	11.1	12.14	4.2	12.06	9.51	9.29	9.37
Merged-chr4-144997335-1	chr4	144996835	144997835	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 67 of 69)	intron (NM_001276465, intron 67 of 69)	104198.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.72	3.69	7.4	8.77	11.66	8.04	6.34	0.44	6.25
Merged-chr6-14901670-1	chr6	14901170	14902170	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_053242, exon 1 of 19)	5' UTR (NM_053242, exon 1 of 19)	321.0	NM_053242	114142.0	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	3.43	2.76	1.85	4.05	1.87	0.0	1.06	0.88	0.0
Merged-chr14-27380836-1	chr14	27380336	27381336	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 4 of 10)	L1ME4b|LINE|L1	19447.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	144.16	137.31	76.77	174.08	144.15	90.83	218.63	191.02	81.81
Merged-chr19-55814644-1	chr19	55814144	55815144	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	72834.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	17.16	14.75	11.1	14.84	12.13	13.66	14.79	13.27	8.74
Merged-chr13-112658802-1	chr13	112658302	112659302	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1964.0	NM_178746	268706.0	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	1.14	3.69	5.55	2.7	3.73	1.61	5.28	4.86	6.87
Merged-chr6-125272286-1	chr6	125271786	125272786	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	6761.0	NR_015527	73870.0	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	40.04	27.65	42.55	40.48	15.86	13.66	50.7	38.91	18.74
Merged-chr6-83643166-1	chr6	83642666	83643666	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	12950.0	NM_016751	51811.0	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	25.74	26.26	33.3	30.36	30.32	52.25	20.07	27.86	34.35
Merged-chr14-104002692-1	chr14	104002192	104003192	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045953, intron 1 of 2)	intron (NR_045953, intron 1 of 2)	24450.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	7.44	3.69	1.85	10.12	2.33	1.61	16.9	6.63	2.5
Merged-chr7-89998217-2	chr7	89997697	89998697	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17221.0	NM_021876	13626.0	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	6.86	3.69	0.0	1.35	0.47	3.22	8.45	0.88	1.25
Merged-chr19-6979228-1	chr19	6978728	6979728	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008020, intron 1 of 5)	intron (NM_008020, intron 1 of 5)	164.0	NM_001360288	14227.0	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	61.78	45.16	51.8	51.95	30.79	57.07	54.92	61.46	38.72
Merged-chr8-104051198-1	chr8	104050698	104051698	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50427.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	1.72	2.3	0.0	3.37	0.0	3.22	2.11	3.1	1.25
Merged-chr16-92670506-1	chr16	92670006	92671006	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 4 of 6)	intron (NM_001111022, intron 4 of 6)	26823.0	NM_001111023	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	24.6	20.27	38.85	26.31	16.79	18.49	15.84	22.11	9.37
Merged-chr1-10089750-1	chr1	10089250	10090250	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026493, intron 14 of 29)	B4|SINE|B4	51532.0	NM_026493	211660.0	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	2.29	3.23	0.0	4.72	3.27	0.0	3.17	0.88	3.75
Merged-chr2-27358659-1	chr2	27358159	27359159	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	68949.0	NR_133905	22325.0	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	16.02	16.59	28.67	12.82	10.26	13.66	20.07	5.75	4.37
Merged-chr7-97589645-1	chr7	97589145	97590145	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081267, intron 1 of 15)	intron (NM_001081267, intron 1 of 15)	9749.0	NM_001081267	233532.0	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	12.01	7.83	21.27	14.17	9.8	12.86	17.96	10.61	11.24
Merged-chr6-24721913-1	chr6	24721413	24722413	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11332.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	3.43	4.15	3.7	6.07	2.8	3.22	3.17	5.31	1.25
Merged-chr8-123422715-1	chr8	123422215	123423215	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_023279)	TTS (NM_023279)	11151.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	3.43	0.92	1.85	3.37	1.4	0.0	6.34	5.31	8.74
Merged-chr18-74911077-1	chr18	74910577	74911577	+	586.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	50186.0	NM_010720	16891.0	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	5.15	0.46	3.7	0.67	2.33	1.61	4.22	0.88	2.5
Merged-chr19-9140585-1	chr19	9140085	9141085	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	-5019.0	NM_025610	66514.0	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	2.86	3.23	6.47	4.72	4.67	1.61	4.22	2.65	6.25
Merged-chr1-65189075-1	chr1	65188575	65189575	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310624, intron 1 of 41)	intron (NM_001310624, intron 1 of 41)	2390.0	NM_011086	18711.0	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE type zinc finger containing	protein-coding	14.87	20.27	12.02	22.27	19.13	25.72	27.46	19.9	23.73
Merged-chr1-191120693-1	chr1	191120193	191121193	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	22279.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	34.9	32.72	30.52	47.23	19.13	25.72	10.56	13.27	0.0
Merged-chr15-72716674-1	chr15	72716174	72717174	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 18 of 21)	intron (NM_029640, intron 18 of 21)	93650.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	2.29	5.07	6.47	5.4	1.87	1.61	2.11	1.33	1.87
Merged-chr6-135167516-1	chr6	135167016	135168016	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013546, intron 1 of 3)	intron (NM_013546, intron 1 of 3)	699.0	NM_013546	15199.0	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	149.31	183.39	147.99	211.86	256.11	144.68	235.53	238.33	98.68
Merged-chr2-12051295-1	chr2	12050795	12051795	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-249951.0	NR_040353	338535.0	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	8.01	3.69	3.7	8.77	6.06	1.61	6.34	2.65	3.75
Merged-chr17-81500832-1	chr17	81500332	81501332	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	237555.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	8.01	7.37	16.65	16.19	5.13	9.65	4.22	8.84	7.49
Merged-chr17-7864979-1	chr17	7864479	7865479	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60005.0	NM_001081416	68655.0	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	6.29	5.99	1.85	5.4	0.0	3.22	2.11	4.86	2.5
Merged-chr6-124997534-1	chr6	124997034	124998034	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001145927)	promoter-TSS (NM_001145927)	814.0	NM_175696	319352.0	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	40.62	36.4	59.2	39.13	22.39	65.91	13.73	8.4	6.25
Merged-chr5-112907547-2	chr5	112907039	112908039	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11177.0	NM_028901	74376.0	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	4.58	6.91	0.0	4.72	3.27	3.22	1.06	4.86	5.0
Merged-chr11-95688088-1	chr11	95687588	95688588	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	21131.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	102.4	111.05	103.59	101.21	82.11	119.76	102.45	106.12	78.69
Merged-chr3-96597686-1	chr3	96597186	96598186	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024851, exon 2 of 2)	exon (NM_001024851, exon 2 of 2)	1050.0	NM_001024851	545554.0	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	7.44	5.07	3.7	18.22	6.06	7.23	9.51	5.31	9.37
Merged-chr3-53522918-1	chr3	53522418	53523418	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172862, intron 18 of 23)	intron (NM_172862, intron 18 of 23)	34125.0	NM_153156	229277.0	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	5.15	4.61	3.7	8.77	3.27	4.82	1.06	3.1	0.62
Merged-chr9-53537492-1	chr9	53536992	53537992	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007499)	promoter-TSS (NM_007499)	445.0	NM_001081152	244879.0	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	98.97	121.19	83.25	106.61	80.24	78.77	140.47	128.23	94.93
Merged-chr16-17232966-1	chr16	17232466	17233466	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178922)	promoter-TSS (NM_178922)	-621.0	NM_178922	58180.0	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	20.59	19.35	28.67	20.24	27.06	16.08	16.9	20.34	18.74
Merged-chr9-50697798-1	chr9	50697298	50698298	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178118, intron 5 of 19)	intron (NM_178118, intron 5 of 19)	30186.0	NM_178118	330938.0	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	2.29	4.15	3.7	2.7	1.87	1.61	4.22	2.21	3.12
Merged-chr12-38735677-1	chr12	38735177	38736177	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-44405.0	NM_001347379	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	5.15	4.15	4.62	2.7	0.93	4.82	1.06	1.33	3.75
Merged-chr14-70371063-1	chr14	70370563	70371563	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-19639.0	NM_001135151	213053.0	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	11.44	8.75	12.02	12.14	7.0	8.84	10.56	7.07	6.87
Merged-chr2-84429927-2	chr2	84429422	84430422	+	586.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4656.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.29	6.45	1.85	6.75	2.8	1.61	1.06	6.63	3.75
Merged-chr1-45926232-1	chr1	45925732	45926732	+	586.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_016917)	promoter-TSS (NM_016917)	-638.0	NM_016917	53945.0	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	78.37	109.21	79.55	67.47	82.11	99.67	69.71	67.65	30.6
Merged-chr19-14636899-2	chr19	14636415	14637415	+	585.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38732.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	4.58	14.28	4.62	8.1	10.26	18.49	17.96	15.48	11.24
Merged-chr15-78178545-3	chr15	78178049	78179049	+	585.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4441.0	NM_025931	67042.0	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.57	3.23	0.0	2.02	0.93	3.22	2.11	0.44	2.5
Merged-chr14-21987882-3	chr14	21987316	21988316	+	585.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_145459, exon 2 of 3)	5' UTR (NM_145459, exon 2 of 3)	1785.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	3.43	3.23	0.0	2.7	0.93	4.82	2.11	0.88	1.25
Merged-chr11-69235879-2	chr11	69235355	69236355	+	585.799988	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008192, intron 2 of 18)	CpG	1167.0	NM_008192	14919.0	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	6.86	2.76	9.25	6.75	4.2	3.22	6.34	1.33	3.75
Merged-chr12-91750992-2	chr12	91750509	91751509	+	585.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175367, intron 1 of 6)	MLT1N2|LTR|ERVL-MaLR	35427.0	NM_175367	108800.0	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	40.62	45.62	22.2	35.76	27.52	32.96	17.96	26.09	16.24
Merged-chr2-83621982-2	chr2	83621468	83622468	+	585.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	T-rich|Low_complexity|Low_complexity	-22610.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	12.01	8.29	6.47	16.19	9.8	4.82	15.84	12.82	6.25
Merged-chr3-95497836-1	chr3	95497336	95498336	+	585.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009709)	TTS (NM_009709)	-1374.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	6.29	6.45	0.0	12.14	9.33	5.63	8.45	3.98	7.49
Merged-chr9-20831108-2	chr9	20830584	20831584	+	585.625	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12580.0	NM_001030290	235033.0	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	2.86	4.15	11.1	2.7	0.93	3.22	1.06	2.65	7.49
Merged-chr9-65826824-3	chr9	65826343	65827343	+	585.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172536, intron 1 of 9)	intron (NM_172536, intron 1 of 9)	721.0	NM_172536	214812.0	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	50.91	45.16	53.65	37.11	30.79	61.09	49.64	38.91	37.47
Merged-chr9-41084886-1	chr9	41084386	41085386	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	-5380.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.01	4.15	9.25	6.75	5.6	1.61	20.07	9.73	5.62
Merged-chr6-38712995-2	chr6	38712495	38713495	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010433, intron 12 of 14)	ORR1D2|LTR|ERVL-MaLR	49926.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	161.32	129.48	83.25	161.26	84.9	71.54	113.01	166.25	97.43
Merged-chr15-101258606-1	chr15	101258106	101259106	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8240.0	NM_010444	15370.0	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	78.37	50.69	61.05	70.17	59.71	71.54	88.72	88.88	56.83
Merged-chr11-116419467-1	chr11	116418967	116419967	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6435.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	16.02	9.68	10.17	13.49	5.13	9.65	8.45	7.96	8.74
Merged-chr1-23917036-1	chr1	23916536	23917536	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357395, intron 1 of 10)	RMER4B|LTR|ERVK	5345.0	NM_001357395	98366.0	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	2.86	4.15	0.0	3.37	3.27	6.43	12.67	5.31	10.62
Merged-chr19-55563003-1	chr19	55562503	55563503	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	139201.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	26.89	17.97	27.75	17.54	21.46	25.72	12.67	11.94	24.36
Merged-chr4-53145981-1	chr4	53145481	53146481	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 1 of 49)	MIRb|SINE|MIR	13914.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	11.44	8.29	11.1	12.14	5.6	14.47	9.51	12.38	3.75
Merged-chr7-105954037-1	chr7	105953537	105954537	+	585.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029000)	promoter-TSS (NM_029000)	-67.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	7.39	6.19	3.75
Merged-chr15-98871375-2	chr15	98870880	98871880	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-175.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	139.58	177.4	188.69	114.03	121.29	159.95	176.38	106.56	137.4
Merged-chr14-40929366-1	chr14	40928866	40929866	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145928, intron 2 of 8)	intron (NM_145928, intron 2 of 8)	18843.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	36.61	29.03	24.05	39.13	27.06	40.19	23.24	22.99	20.61
Merged-chr7-142334400-2	chr7	142333894	142334894	+	585.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177265, intron 3 of 3)	intron (NM_177265, intron 3 of 3)	30892.0	NM_015809	50775.0	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	5.72	3.23	1.85	4.72	0.47	3.22	4.22	1.77	3.75
Merged-chr14-54748442-1	chr14	54747942	54748942	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	33444.0	NM_016972	50934.0	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	21.17	12.44	14.8	10.12	7.93	16.88	14.79	9.29	11.24
Merged-chr8-70751273-1	chr8	70750773	70751773	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310465)	TTS (NM_001310465)	-3406.0	NM_001328047	19339.0	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	24.03	26.73	22.2	29.01	13.06	36.17	21.12	33.6	25.61
Merged-chr14-17409615-1	chr14	17409115	17410115	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-251345.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.72	8.75	9.25	4.05	14.46	3.22	2.11	3.98	4.37
Merged-chr1-161496311-2	chr1	161495791	161496791	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183391, intron 1 of 2)	intron (NM_183391, intron 1 of 2)	1634.0	NM_183391	240873.0	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	16.02	26.26	9.25	10.8	4.2	9.65	8.45	16.36	6.87
Merged-chr14-30764593-1	chr14	30764093	30765093	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	48978.0	NM_001166532	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	14.3	16.59	5.55	20.24	14.0	8.04	10.56	7.96	6.87
Merged-chr8-70864087-2	chr8	70863584	70864584	+	585.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7076.0	NM_032397	84036.0	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	17.73	5.53	5.55	11.47	5.6	7.23	10.56	8.84	2.5
Merged-chr10-122447496-1	chr10	122446996	122447996	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1003.0	NM_016847	54140.0	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	2.29	0.0	0.0	1.35	1.87	0.8	3.17	0.0	3.75
Merged-chr6-34964704-1	chr6	34964204	34965204	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025573, intron 2 of 7)	intron (NM_001025573, intron 2 of 7)	13295.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	5.15	5.07	3.7	4.72	5.6	3.22	0.0	3.98	3.12
Merged-chr11-84868956-1	chr11	84868456	84869456	+	585.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153144, intron 2 of 13)	intron (NM_153144, intron 2 of 13)	-1049.0	NR_131201	102635561.0	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	117.84	136.39	74.0	112.0	110.56	80.38	108.79	135.3	78.69
Merged-chr10-84405392-2	chr10	84404895	84405895	+	585.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	35076.0	NM_001004363	77976.0	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	9.72	6.45	5.55	12.14	5.6	16.08	8.45	9.29	1.25
Merged-chr9-78493433-2	chr9	78492945	78493945	+	585.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11721.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	6.86	5.99	12.02	4.72	8.86	15.27	13.73	13.27	3.12
Merged-chr9-66978181-2	chr9	66977673	66978673	+	585.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-2689.0	NM_030717	80907.0	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	7.44	7.37	7.4	15.52	9.8	6.43	5.28	8.4	15.61
Merged-chr11-73199998-1	chr11	73199498	73200498	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_031251)	promoter-TSS (NM_031251)	516.0	NM_029031	74637.0	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	47.48	38.25	29.6	66.8	46.18	31.35	44.36	51.29	18.11
Merged-chr7-132226857-2	chr7	132226376	132227376	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72135.0	NM_018867	55987.0	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	5.15	1.38	3.7	6.07	0.47	3.22	0.0	2.65	0.0
Merged-chr3-87363933-1	chr3	87363433	87364433	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	6052.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	30.32	26.73	32.37	34.41	21.46	30.54	60.2	73.4	45.59
Merged-chr2-11593525-2	chr2	11593022	11594022	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_152824, intron 5 of 11)	intron (NM_152824, intron 5 of 11)	9677.0	NM_152824	76938.0	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	6.29	16.59	20.35	12.82	4.67	17.68	17.96	7.52	8.74
Merged-chr1-107585039-1	chr1	107584539	107585539	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4967.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	13.16	24.42	9.25	13.49	11.66	3.22	15.84	10.17	7.49
Merged-chr8-26123316-1	chr8	26122816	26123816	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357292, intron 2 of 6)	intron (NM_001357292, intron 2 of 6)	3506.0	NM_001357294	77733.0	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	7.44	15.21	7.4	8.77	10.73	6.43	11.62	5.75	11.24
Merged-chr1-92215436-1	chr1	92214936	92215936	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35095.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	5.15	12.9	16.65	10.12	10.26	15.27	12.67	11.94	6.25
Merged-chr8-83700560-1	chr8	83700060	83701060	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1381.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	10.3	15.67	22.2	18.22	6.53	9.65	1.06	8.4	8.74
Merged-chr8-122315104-1	chr8	122314604	122315604	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 3 of 9)	intron (NM_009569, intron 3 of 9)	32963.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	12.59	11.52	16.65	14.84	14.46	17.68	15.84	11.05	16.86
Merged-chr18-84950818-1	chr18	84950318	84951318	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025969, intron 1 of 5)	intron (NM_025969, intron 1 of 5)	706.0	NM_025969	67105.0	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	67.5	54.37	17.57	57.35	43.85	53.05	71.82	65.0	21.86
Merged-chr18-46599853-1	chr18	46599353	46600353	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010120, intron 2 of 2)	MLT1D|LTR|ERVL-MaLR	2149.0	NM_010120	13664.0	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	33.75	50.23	25.9	23.62	16.33	21.7	44.36	46.43	22.48
Merged-chr9-45677699-2	chr9	45677202	45678202	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 8 of 32)	intron (NM_001081270, intron 8 of 32)	150936.0	NM_001081373	214552.0	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	2.86	1.84	0.0	1.35	1.87	0.0	3.17	3.98	5.0
Merged-chr2-129258951-2	chr2	129258452	129259452	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38260.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	4.0	3.69	1.85	4.05	1.87	0.0	2.11	3.1	1.25
Merged-chr15-102239365-1	chr15	102238865	102239865	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042727, intron 6 of 7)	intron (NM_001042727, intron 6 of 7)	7135.0	NM_001042727	19411.0	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	5.15	6.91	5.55	3.37	5.13	1.61	2.11	0.88	8.12
Merged-chr4-124908390-1	chr4	124907890	124908890	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001256432, intron 8 of 16)	intron (NM_001256432, intron 8 of 16)	-13608.0	NR_040651	73628.0	Mm.398337	NR_040651	ENSMUSG00000085263	1700125G02Rik	-	RIKEN cDNA 1700125G02 gene	ncRNA	5.72	2.3	0.0	2.02	1.4	4.82	0.0	1.33	1.87
Merged-chr4-10972808-1	chr4	10972308	10973308	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34811.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.15	7.37	4.62	13.49	8.4	13.66	34.85	21.67	18.11
Merged-chr11-116100046-1	chr11	116099546	116100546	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10189.0	NM_001205081	217333.0	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	46.34	53.45	56.42	27.66	15.86	24.92	23.24	38.47	21.86
Merged-chr11-119235868-1	chr11	119235368	119236368	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175430, intron 3 of 18)	B3A|SINE|B2	7296.0	NM_175430	207607.0	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	4.58	4.61	11.1	3.37	1.4	1.61	3.17	0.44	0.0
Merged-chr7-29178340-1	chr7	29177840	29178840	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026545, intron 3 of 6)	intron (NM_026545, intron 3 of 6)	2333.0	NM_026545	57296.0	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	5.72	6.91	1.85	3.37	3.27	0.0	8.45	6.63	3.75
Merged-chr12-83771061-2	chr12	83770563	83771563	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205343, intron 3 of 27)	intron (NM_001205343, intron 3 of 27)	7429.0	NM_130887	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	2.86	1.38	5.55	1.35	1.4	1.61	1.06	0.44	2.5
Merged-chr4-124646770-1	chr4	124646270	124647270	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10876.0	NM_011141	18991.0	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	9.15	8.75	14.8	8.77	4.67	11.25	17.96	13.71	11.87
Merged-chr13-45401920-1	chr13	45401420	45402420	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153789, intron 2 of 6)	PB1D9|SINE|Alu	12178.0	NM_153789	218203.0	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	9.72	4.61	2.77	6.07	3.73	12.86	3.17	0.44	3.12
Merged-chr12-34451484-1	chr12	34450984	34451984	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 4 of 27)	intron (NM_001271386, intron 4 of 27)	77405.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	8.58	17.05	7.4	8.1	8.86	8.84	5.28	10.61	5.0
Merged-chr9-20898018-1	chr9	20897518	20898518	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016876, intron 3 of 10)	intron (NM_016876, intron 3 of 10)	572.0	NM_016876	53356.0	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	90.96	68.66	82.32	80.29	55.51	71.54	142.59	89.76	72.45
Merged-chr11-65701097-1	chr11	65700597	65701597	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316368, intron 7 of 10)	RMER16_Mm|LTR|ERVK	33735.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	6.29	2.3	9.25	4.05	1.4	4.02	5.28	1.77	6.25
Merged-chr15-100914858-1	chr15	100914358	100915358	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077499, intron 1 of 26)	intron (NM_001077499, intron 1 of 26)	-21413.0	NM_011323	20273.0	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	2.29	3.23	7.4	4.05	0.47	4.02	0.0	2.65	0.0
Merged-chr5-5658871-1	chr5	5658371	5659371	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172447, intron 1 of 22)	Lx3_Mus|LINE|L1	5361.0	NM_172447	207686.0	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	5.15	2.3	6.47	4.05	1.87	3.22	0.0	2.21	5.0
Merged-chr1-184718756-1	chr1	184718256	184719256	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_040627, exon 3 of 3)	non-coding (NR_040627, exon 3 of 3)	6259.0	NR_040627	74971.0	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	5.72	0.46	3.7	3.37	3.73	4.02	2.11	3.54	1.25
Merged-chr16-90377626-1	chr16	90377126	90378126	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8771.0	NM_015755	26559.0	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	3.43	3.23	5.55	2.7	1.87	3.22	7.39	0.88	2.5
Merged-chr11-75151660-1	chr11	75151160	75152160	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 15 of 18)	intron (NM_001002764, intron 15 of 18)	16492.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	34.9	39.63	37.92	24.29	27.06	51.44	34.85	43.77	23.73
Merged-chr16-11686177-1	chr16	11685677	11686677	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028964, intron 18 of 20)	ORR1F|LTR|ERVL-MaLR	-93525.0	NR_126430	73761.0	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	1.72	1.38	5.55	2.7	0.47	4.82	1.06	3.98	1.25
Merged-chr2-25292985-1	chr2	25292485	25293485	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008169, intron 19 of 19)	intron (NM_008169, intron 19 of 19)	1765.0	NM_001242940	320354.0	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	4.58	3.23	1.85	0.67	0.47	1.61	7.39	4.86	3.75
Merged-chr11-100583077-1	chr11	100582577	100583577	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_019795, exon 14 of 14)	3' UTR (NM_019795, exon 14 of 14)	7186.0	NM_001146318	12799.0	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	31.46	22.12	54.57	17.54	20.06	30.54	27.46	31.39	43.72
Merged-chr12-40447804-1	chr12	40447304	40448304	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	1751.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	29.75	15.21	25.9	22.94	23.33	16.08	27.46	22.11	9.37
Merged-chrX-74452928-1	chrX	74452428	74453428	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001161423, exon 10 of 10)	3' UTR (NM_001161423, exon 10 of 10)	23247.0	NM_010547	16151.0	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	2.29	1.38	0.0	2.02	0.0	3.22	8.45	0.0	0.0
Merged-chr6-34942202-1	chr6	34941702	34942702	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21254.0	NM_009292	20899.0	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	6.86	0.92	1.85	6.07	6.06	3.22	4.22	3.98	5.0
Merged-chr16-57390880-1	chr16	57390380	57391380	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	37603.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	38.33	26.73	34.22	36.43	17.26	47.42	41.19	38.47	33.72
Merged-chr19-34921393-1	chr19	34920893	34921893	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001362434)	promoter-TSS (NM_001362434)	-965.0	NM_001362434	240641.0	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|C330014J10Rik|MPP1|Mphosph1|magoo	kinesin family member 20B	protein-coding	21.74	37.32	40.7	36.43	35.45	31.35	36.97	49.52	21.86
Merged-chr7-35028010-2	chr7	35027526	35028526	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	28540.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	104.11	144.23	109.14	220.63	209.0	187.28	235.53	237.44	129.9
Merged-chr7-4500602-1	chr7	4500102	4501102	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029834, intron 1 of 21)	PB1D10|SINE|Alu	1078.0	NM_029834	232807.0	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	175.62	134.55	71.22	109.3	86.3	77.16	146.81	133.98	80.56
Merged-chr10-127323005-1	chr10	127322505	127323505	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359656)	promoter-TSS (NM_001359656)	-702.0	NM_146011	216445.0	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	94.96	101.83	106.37	84.34	75.11	85.2	114.07	152.99	93.68
Merged-chr4-141139234-1	chr4	141138734	141139734	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277195, intron 1 of 3)	CpG	562.0	NR_102344	213491.0	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	287.17	343.28	232.16	235.48	214.59	217.83	289.39	340.91	199.22
Merged-chr7-102540676-1	chr7	102540176	102541176	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5927.0	NM_147079	259083.0	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding	5.15	9.68	9.25	12.82	12.13	18.49	4.22	3.1	2.5
Merged-chr11-120648245-1	chr11	120647745	120648745	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001204820)	promoter-TSS (NM_001204820)	92.0	NM_026751	68515.0	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	6.29	0.92	2.77	6.07	3.27	8.84	4.22	2.21	2.5
Merged-chr1-161190435-1	chr1	161189935	161190935	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-31121.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	4.0	7.83	13.87	0.67	4.67	3.22	5.28	4.86	1.25
Merged-chr14-17404217-1	chr14	17403717	17404717	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-256743.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	4.0	3.69	11.1	6.07	2.8	3.22	6.34	6.19	5.62
Merged-chr3-107036706-1	chr3	107036206	107037206	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008418, exon 1 of 1)	exon (NM_008418, exon 1 of 1)	544.0	NM_008418	16491.0	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	5.15	5.07	3.7	3.37	3.27	4.82	8.45	1.33	3.75
Merged-chr4-83322945-1	chr4	83322445	83323445	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027238, intron 1 of 19)	intron (NM_027238, intron 1 of 19)	1244.0	NM_027238	69863.0	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	53.2	63.13	42.55	46.56	57.38	49.03	58.09	69.42	56.21
Merged-chr7-68656542-1	chr7	68656042	68657042	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	38086.0	NR_003648	384639.0	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	6.86	0.46	3.7	2.02	3.73	0.8	1.06	2.65	2.5
Merged-chr9-121284710-1	chr9	121284210	121285210	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7538.0	NM_177589	209012.0	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.0	2.3	0.0	4.72	3.73	0.0	7.39	3.1	4.37
Merged-chr1-171474420-2	chr1	171473907	171474907	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-29071.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	6.29	15.67	9.25	8.77	9.8	13.66	4.22	1.33	3.12
Merged-chrX-36851445-1	chrX	36850945	36851945	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029951, intron 6 of 6)	ID_B1|SINE|B4	12801.0	NM_029951	77644.0	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	17.73	9.68	4.62	5.4	4.67	3.22	23.24	11.94	3.75
Merged-chr5-63966102-1	chr5	63965602	63966602	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145923, intron 1 of 6)	intron (NM_145923, intron 1 of 6)	2795.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	9.15	11.98	12.95	11.47	9.33	12.86	10.56	14.59	23.11
Merged-chr2-118901874-1	chr2	118901374	118902374	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	CpG	259.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	24.6	10.14	11.1	20.24	12.6	15.27	35.91	12.38	15.61
Merged-chr19-16109037-1	chr19	16108537	16109537	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23794.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	10.3	13.82	16.65	6.07	5.6	22.51	22.18	19.01	24.36
Merged-chr4-136052583-1	chr4	136052083	136053083	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_154592).3	promoter-TSS (NR_154592).3	788.0	NM_025919	67025.0	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	101.83	81.1	51.8	89.06	93.77	98.06	117.24	88.43	46.84
Merged-chr2-84458120-1	chr2	84457620	84458620	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177320, exon 3 of 8)	exon (NM_001177320, exon 3 of 8)	16054.0	NM_011576	21788.0	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	13.73	7.37	11.1	3.37	2.8	19.29	12.67	10.61	7.49
Merged-chr14-119003479-2	chr14	119002997	119003997	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081252, intron 34 of 38)	B3|SINE|B2	65565.0	NM_008929	100037258.0	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	2.86	4.15	1.85	2.7	7.93	6.43	2.11	0.88	1.25
Merged-chr8-75101432-1	chr8	75100932	75101932	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010442)	TTS (NM_010442)	7814.0	NM_010442	15368.0	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	8.58	10.14	16.65	8.77	7.93	12.86	8.45	8.84	20.61
Merged-chr8-6140292-1	chr8	6139792	6140792	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-1035005.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	7.44	10.14	0.0	4.05	6.06	0.0	12.67	3.98	0.0
Merged-chr19-4046040-1	chr19	4045540	4046540	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3819.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	5.15	5.53	3.7	2.02	4.2	4.82	1.06	6.19	1.25
Merged-chr4-43724948-1	chr4	43724448	43725448	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2250.0	NM_027511	100039781.0	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	1.14	1.84	0.92	5.4	3.27	4.82	2.11	0.88	3.12
Merged-chr2-119050429-2	chr2	119049928	119050928	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029617, intron 1 of 23)	intron (NM_029617, intron 1 of 23)	3309.0	NM_029617	76464.0	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	4.0	10.6	1.85	6.07	4.2	8.04	5.28	4.86	1.87
Merged-chr17-85218294-1	chr17	85217794	85218794	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028576, intron 3 of 10)	MLT1H1|LTR|ERVL-MaLR	127594.0	NM_028576	73582.0	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	2.29	2.3	2.77	8.1	4.2	6.43	3.17	0.88	4.37
Merged-chr2-26903552-1	chr2	26903052	26904052	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-665.0	NM_009298	20935.0	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	63.5	55.75	63.82	50.6	66.71	66.71	74.99	92.41	56.83
Merged-chr14-120325187-1	chr14	120324687	120325687	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_207515, exon 2 of 8)	5' UTR (NM_207515, exon 2 of 8)	18735.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	91.53	76.49	45.32	141.02	94.23	49.03	140.47	138.4	52.46
Merged-chr5-24036919-1	chr5	24036419	24037419	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER21C|LTR|ERVL	-6229.0	NM_053090	84652.0	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	12.59	19.35	11.1	17.54	17.73	31.35	15.84	11.94	24.98
Merged-chr12-111375900-1	chr12	111375400	111376400	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 1 of 36)	intron (NM_183016, intron 1 of 36)	1818.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	101.83	76.49	49.02	93.11	79.31	52.25	77.1	93.74	50.59
Merged-chr17-7874373-1	chr17	7873873	7874873	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-51627.0	NM_145968	72536.0	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik|TRD|Tcd-1|Tcd1|Tcd1a|tcs-1|tcs1	T cell activation Rho GTPase activating protein	protein-coding	10.87	7.37	6.47	14.84	14.0	7.23	12.67	8.84	11.24
Merged-chrX-168415582-1	chrX	168415082	168416082	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033330, intron 3 of 19)	L1M4a1|LINE|L1	161649.0	NM_001033330	333605.0	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	4.0	2.3	0.0	2.02	0.93	4.02	1.06	0.0	0.0
Merged-chr15-73183617-1	chr15	73183117	73184117	+	585.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153178, intron 1 of 18)	intron (NM_153178, intron 1 of 18)	1330.0	NM_153178	239528.0	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	41.76	40.55	36.07	45.21	37.79	29.74	49.64	27.41	26.23
Merged-chr3-142688676-1	chr3	142688176	142689176	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR1B-int|LTR|ERV1	-12372.0	NM_173763	229905.0	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	2.86	2.76	6.47	6.75	1.87	6.43	2.11	8.4	5.0
Merged-chr7-55843034-1	chr7	55842534	55843534	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011370, intron 1 of 30)	intron (NM_011370, intron 1 of 30)	963.0	NM_001164661	20430.0	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	84.09	106.44	134.12	81.64	64.38	118.16	91.89	99.05	118.66
Merged-chr2-34642623-1	chr2	34642123	34643123	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	112609.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.58	0.0	1.85	4.72	0.0	1.61	1.06	3.1	5.0
Merged-chr11-85925583-1	chr11	85925083	85926083	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28818.0	NM_172798	21387.0	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	4.0	2.76	2.77	4.05	7.0	4.82	4.22	0.0	5.0
Merged-chr14-27317366-1	chr14	27316866	27317866	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027871, intron 2 of 10)	intron (NM_027871, intron 2 of 10)	-18671.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	1.14	1.38	4.62	2.7	1.87	4.02	5.28	3.1	5.62
Merged-chr1-78914132-1	chr1	78913632	78914632	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151519, intron 3 of 3)	Lx8|LINE|L1	97221.0	NM_021342	57814.0	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	14.3	17.05	12.95	11.47	15.39	12.86	20.07	13.71	5.62
Merged-chr10-67318262-1	chr10	67317762	67318762	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32981.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	3.43	0.46	5.55	10.8	1.4	1.61	7.39	7.52	3.75
Merged-chr3-104777490-1	chr3	104776990	104777990	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183224)	promoter-TSS (NM_183224)	57.0	NM_183224	329731.0	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|Sam3|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	1.14	0.92	2.77	0.67	1.87	3.22	1.06	0.0	4.37
Merged-chr5-36518542-1	chr5	36518042	36519042	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 7 of 13)	intron (NM_133910, intron 7 of 13)	12081.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	12.01	14.28	24.05	14.84	10.26	22.51	8.45	2.65	8.12
Merged-chr12-102711012-1	chr12	102710512	102711512	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6143.0	NM_172584	217837.0	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	7.44	4.15	7.4	8.77	5.6	4.02	4.22	5.31	3.12
Merged-chr4-3640085-1	chr4	3639585	3640585	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16421.0	NR_040643	70143.0	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	26.89	22.58	19.42	12.14	12.6	16.08	47.53	38.91	42.47
Merged-chr2-124608209-1	chr2	124607709	124608709	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-2087.0	NM_199238	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	45.76	44.7	37.92	44.53	21.93	48.23	34.85	27.41	34.97
Merged-chr8-86585296-1	chr8	86584796	86585796	+	585.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18706.0	NM_172912	244562.0	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	5.15	1.84	3.7	2.02	4.67	1.61	1.06	2.65	3.75
Merged-chr6-24967869-1	chr6	24967369	24968369	+	585.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-11744.0	NM_177013	319832.0	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	13.16	8.75	0.92	12.14	8.86	14.47	6.34	4.86	11.24
Merged-chr11-70130119-2	chr11	70129621	70130621	+	584.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145137)	promoter-TSS (NM_145137)	-236.0	NM_145137	216864.0	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	4.58	4.15	9.25	6.07	4.2	9.65	4.22	3.1	8.12
Merged-chr2-122143979-3	chr2	122143488	122144488	+	584.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	MTD|LTR|ERVL-MaLR	-3699.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	26.89	13.36	22.2	19.57	6.06	6.43	14.79	12.82	9.99
Merged-chr9-45138601-2	chr9	45138087	45139087	+	584.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013390)	promoter-TSS (NM_001013390)	-455.0	NM_001013390	399548.0	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	2.29	1.84	11.1	6.07	2.33	0.0	1.06	0.88	0.0
Merged-chr9-99580833-2	chr9	99580330	99581330	+	584.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031403, intron 5 of 7)	B2_Mm2|SINE|B2	5031.0	NM_031403	83703.0	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	3.43	4.15	3.7	7.42	2.8	4.02	6.34	3.54	2.5
Merged-chr4-55650402-2	chr4	55649948	55650948	+	584.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-117973.0	NM_010637	16600.0	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	54.35	34.1	19.42	46.56	39.19	57.87	33.8	30.95	26.85
Merged-chr2-129615005-2	chr2	129614495	129615495	+	584.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177647, intron 2 of 5)	intron (NM_001177647, intron 2 of 5)	19533.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	16.59	18.89	28.67	11.47	9.8	15.27	14.79	14.15	19.98
Merged-chr7-16229212-1	chr7	16228712	16229712	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7180.0	NM_027883	71723.0	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	48.05	34.56	42.55	44.53	46.18	82.79	40.14	42.45	29.35
Merged-chr6-86547494-2	chr6	86547007	86548007	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037961, intron 3 of 4)	MIR3|SINE|MIR	20106.0	NR_037961	72012.0	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	75.51	59.44	43.47	37.78	8.4	19.29	70.76	80.92	16.86
Merged-chr9-56744533-2	chr9	56744030	56745030	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181074, intron 2 of 6)	intron (NM_181074, intron 2 of 6)	51780.0	NM_001361118	235402.0	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	4.0	3.23	8.32	2.7	0.93	0.8	3.17	1.33	6.87
Merged-chr7-73595982-1	chr7	73595482	73596482	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-37587.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	189.35	197.68	115.62	170.03	181.94	128.61	158.43	187.48	86.18
Merged-chr19-40691992-1	chr19	40691492	40692492	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	32222.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	50.34	40.09	43.47	31.04	26.59	52.25	64.43	55.71	28.73
Merged-chr14-105262536-2	chr14	105262028	105263028	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029561, intron 1 of 7)	B3A|SINE|B2	3855.0	NM_001190989	76273.0	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	4.58	5.07	1.85	2.7	4.2	4.82	7.39	5.31	6.25
Merged-chr11-78360676-2	chr11	78360175	78361175	+	584.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008238, intron 8 of 8)	intron (NM_008238, intron 8 of 8)	13965.0	NM_001313987	22248.0	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.72	3.69	3.7	12.14	8.86	14.47	9.51	13.27	9.99
Merged-chr2-118373126-1	chr2	118372626	118373626	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_201367, exon 1 of 3)	exon (NM_201367, exon 1 of 3)	293.0	NM_201367	381413.0	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	2.29	2.3	3.7	0.67	5.6	0.0	8.45	2.65	5.0
Merged-chr10-9900683-1	chr10	9900183	9901183	+	584.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081344, exon 1 of 26)	exon (NM_001081344, exon 1 of 26)	357.0	NM_001081344	78808.0	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	49.77	31.79	25.9	64.1	33.59	40.19	64.43	13.71	21.23
Merged-chr14-34502177-1	chr14	34501677	34502677	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	CpG	369.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	77.23	62.67	43.47	83.66	76.97	58.68	129.91	68.98	49.34
Merged-chr19-6477198-2	chr19	6476720	6477720	+	584.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 9 of 22)	intron (NM_001205234, intron 9 of 22)	58482.0	NM_001205234	18190.0	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	18.88	20.27	4.62	16.87	14.0	11.25	16.9	16.8	23.11
Merged-chr18-57879356-2	chr18	57878879	57879879	+	584.375	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009194, exon 1 of 27)	exon (NM_009194, exon 1 of 27)	701.0	NM_009194	20496.0	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	21.17	6.45	21.27	34.41	10.73	16.08	23.24	16.8	6.25
Merged-chr12-34751714-1	chr12	34751214	34752214	+	584.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	165381.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	3.43	3.23	5.55	11.47	1.87	1.61	3.17	3.98	3.75
Merged-chr12-84755472-3	chr12	84754998	84755998	+	584.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023409, exon 4 of 4)	3' UTR (NM_023409, exon 4 of 4)	17614.0	NM_023409	67963.0	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	2.29	9.68	0.0	9.45	6.53	8.04	7.39	9.73	5.62
Merged-chr14-21068814-1	chr14	21068314	21069314	+	584.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134079, intron 1 of 10)	intron (NM_134079, intron 1 of 10)	-7338.0	NM_001243041	11534.0	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	9.15	6.91	15.72	8.77	4.2	2.41	4.22	2.65	7.49
Merged-chr17-47756267-3	chr17	47755816	47756816	+	584.166687	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	(GA)n|Simple_repeat|Simple_repeat	18385.0	NM_001161723	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	88.67	66.35	62.9	90.41	92.37	67.52	116.18	95.51	45.59
Merged-chr17-84391119-1	chr17	84390619	84391619	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 25 of 37)	ORR1E|LTR|ERVL-MaLR	75089.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	4.0	5.99	3.7	9.45	6.06	4.02	7.39	4.42	7.49
Merged-chrX-12965347-1	chrX	12964847	12965847	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	-12526.0	NR_153101	75037.0	Mm.387976	NR_153101		4930500G05Rik	-	RIKEN cDNA 4930500G05 gene	ncRNA	4.58	5.99	1.85	5.4	6.06	4.82	3.17	6.19	3.75
Merged-chr10-100147909-1	chr10	100147409	100148409	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	132088.0	NM_013598	17311.0	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	14.3	7.83	3.7	8.1	7.46	11.25	13.73	14.15	5.62
Merged-chr1-131076716-1	chr1	131076216	131077216	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	ORR1D2|LTR|ERVL-MaLR	21127.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	15.45	11.98	5.55	23.62	11.2	17.68	30.63	10.61	6.25
Merged-chr12-104990922-1	chr12	104990422	104991422	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	7755.0	NM_001042699	212073.0	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	3.43	4.15	3.7	2.02	2.33	1.61	2.11	4.42	2.5
Merged-chr19-23782095-1	chr19	23781595	23782595	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	23219.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	3.43	2.76	0.0	4.05	2.8	2.41	2.11	2.65	2.5
Merged-chr18-4347167-1	chr18	4346667	4347667	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	5786.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	43.48	50.23	47.17	45.21	45.72	41.8	63.37	62.79	38.1
Merged-chr11-100298443-1	chr11	100297943	100298943	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21506.0	NM_011508	20918.0	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	3.43	4.61	5.55	3.37	5.6	8.84	5.28	3.98	2.5
Merged-chr6-38662978-1	chr6	38662478	38663478	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001101507)	promoter-TSS (NM_001101507)	-91.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	1.14	0.0	0.0	2.7	1.87	0.0	2.11	0.88	1.25
Merged-chrX-101527556-1	chrX	101527056	101528056	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR31FA_MM|LTR|ERVK	-5179.0	NM_001290729	270627.0	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	10.87	10.6	5.55	10.8	11.2	12.86	11.62	11.5	8.74
Merged-chr1-15799842-2	chr1	15799348	15800348	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5798.0	NM_009352	21749.0	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	41.76	49.3	35.15	22.94	29.39	32.15	10.56	8.84	5.0
Merged-chr5-137749378-1	chr5	137748878	137749878	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023910, intron 2 of 4)	intron (NM_023910, intron 2 of 4)	3409.0	NM_029805	78829.0	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	21.17	23.5	20.35	29.01	14.0	14.47	24.29	22.55	17.49
Merged-chr8-20321398-1	chr8	20320898	20321898	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-23966.0	NR_030708	547150.0	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	2.86	0.92	12.95	2.7	1.4	4.82	1.06	0.88	2.5
Merged-chr19-55901818-1	chr19	55901318	55902318	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142924, intron 1 of 11)	intron (NM_001142924, intron 1 of 11)	6497.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	8.58	7.37	12.95	5.4	4.2	12.86	4.22	3.1	4.37
Merged-chr12-36117328-1	chr12	36116828	36117828	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025840, intron 6 of 11)	intron (NM_025840, intron 6 of 11)	26949.0	NR_003649	432649.0	Mm.347860	NM_001014396	ENSMUSG00000059301	Gm5434	EG432649	ubiquitin-conjugating enzyme E2F (putative) pseudogene	pseudo	1.14	5.99	0.0	2.7	3.73	12.06	2.11	1.77	0.0
Merged-chr5-100917579-1	chr5	100917079	100918079	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71350.0	NM_172715	231510.0	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	5.15	2.3	1.85	3.37	1.4	3.22	0.0	2.21	2.5
Merged-chr15-52953568-1	chr15	52953068	52954068	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	241123.0	NM_027212	69790.0	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	5.72	7.37	1.85	2.02	3.27	0.8	8.45	1.33	0.0
Merged-chr11-103055018-1	chr11	103054518	103055518	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008707, intron 4 of 11)	intron (NM_008707, intron 4 of 11)	25930.0	NM_001361706	72469.0	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	2.86	5.99	6.47	16.19	5.6	4.82	9.51	2.21	4.37
Merged-chr4-88726000-2	chr4	88725488	88726488	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-3480.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	29.75	38.25	24.05	12.14	18.19	26.53	29.57	19.01	26.23
Merged-chr7-19416910-1	chr7	19416410	19417410	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_073014)	TTS (NR_073014)	4507.0	NR_073014	100503495.0	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	2.29	3.23	2.77	3.37	1.87	2.41	3.17	0.44	3.75
Merged-chr2-52262353-1	chr2	52261853	52262853	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010889, intron 54 of 156)	MER20|DNA|hAT-Charlie	-28649.0	NR_040620	78049.0	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	5.15	2.3	1.85	9.45	1.87	3.22	4.22	1.33	3.12
Merged-chr12-80014016-1	chr12	80013516	80014516	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-77752.0	NR_131074	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	7.44	3.69	3.7	9.45	21.46	14.47	8.45	7.07	5.62
Merged-chr6-134527778-1	chr6	134527278	134528278	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 2 of 22)	intron (NM_008514, intron 2 of 22)	39135.0	NM_008514	16974.0	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	18.88	9.22	10.17	16.19	12.6	11.25	7.39	8.4	9.99
Merged-chr8-26723319-1	chr8	26722819	26723819	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	101104.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	3.43	4.61	1.85	0.67	2.33	4.02	9.51	1.77	8.12
Merged-chr15-27785431-1	chr15	27784931	27785931	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081302, intron 34 of 56)	Lx8b|LINE|L1	-103889.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	19.45	12.9	11.1	17.54	9.8	16.08	8.45	8.4	18.74
Merged-chr1-161180836-3	chr1	161180341	161181341	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	-21527.0	NM_001195189	100502590.0	Mm.449990	NM_001195189	ENSMUSG00000049160	Tex50	4930469G21Rik	testis expressed 50	protein-coding	4.58	0.92	4.62	1.35	2.33	3.22	2.11	2.21	3.75
Merged-chr10-120208200-1	chr10	120207700	120208700	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-626.0	NM_026617	68212.0	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	84.66	62.21	24.97	47.23	39.19	36.17	62.31	68.98	36.22
Merged-chr7-142497965-1	chr7	142497465	142498465	+	584.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001163666)	promoter-TSS (NM_001163666)	-871.0	NM_001347549	21957.0	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	6.86	0.46	0.92	2.7	1.87	1.61	1.06	0.88	0.0
Merged-chr8-40497179-1	chr8	40496679	40497679	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13300.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	14.3	26.26	17.57	18.22	21.93	35.37	4.22	5.75	5.0
Merged-chr9-100529089-1	chr9	100528589	100529589	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	RLTR30D_MM|LTR|ERV1	17045.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	19.45	25.8	13.87	11.47	18.66	18.49	43.3	30.07	19.98
Merged-chr5-98713073-1	chr5	98712573	98713573	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024614, intron 3 of 5)	intron (NM_001024614, intron 3 of 5)	-141342.0	NM_173404	110075.0	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	1.14	7.37	0.92	3.37	4.2	2.41	4.22	2.65	3.75
Merged-chr5-101829189-1	chr5	101828689	101829689	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	64059.0	NM_173370	74596.0	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	10.3	2.76	7.4	4.72	2.33	12.86	6.34	1.77	6.25
Merged-chr11-82834141-1	chr11	82833641	82834641	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001164570, exon 2 of 8)	5' UTR (NM_001164570, exon 2 of 8)	-5098.0	NM_026097	67338.0	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	17.73	14.28	20.35	15.52	13.06	11.25	21.12	13.27	11.24
Merged-chr13-107940434-1	chr13	107939934	107940934	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-50370.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	2.86	2.76	1.85	2.7	1.4	3.22	2.11	1.77	1.87
Merged-chr11-65740694-1	chr11	65740194	65741194	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316367, intron 3 of 11)	URR1B|DNA|hAT-Charlie	-5862.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	22.88	13.82	11.1	2.7	6.53	6.43	6.34	6.19	8.12
Merged-chr15-27563617-1	chr15	27563117	27564117	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020332, intron 5 of 11)	intron (NM_020332, intron 5 of 11)	-7877.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.57	1.38	1.85	4.05	1.4	5.63	3.17	1.33	1.25
Merged-chr12-98799834-1	chr12	98799334	98800334	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081191, intron 35 of 43)	intron (NM_001081191, intron 35 of 43)	28812.0	NM_001160108	75553.0	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	4.0	3.69	3.7	9.45	5.13	0.8	3.17	3.98	9.99
Merged-chr17-33827035-2	chr17	33826535	33827535	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_103515)	TTS (NR_103515)	2390.0	NR_103514	66416.0	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	15.45	6.45	1.85	11.47	7.0	4.82	15.84	8.84	5.0
Merged-chr6-113640395-1	chr6	113639895	113640895	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	1928.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	34.32	73.73	44.4	41.16	53.65	32.15	103.51	73.4	44.97
Merged-chr4-156134241-1	chr4	156133741	156134741	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001220499)	TTS (NM_001220499)	6753.0	NM_001220499	100045778.0		NM_001220499	ENSMUSG00000110404	Rnf223	9930005F22Rik	ring finger 223	protein-coding	13.16	11.98	6.47	12.14	8.4	4.02	6.34	3.1	5.62
Merged-chr9-83574444-1	chr9	83573944	83574944	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172507, intron 1 of 3)	intron (NM_172507, intron 1 of 3)	26106.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	13.73	11.06	13.87	20.92	20.99	5.63	17.96	12.38	8.74
Merged-chr19-40697765-1	chr19	40697265	40698265	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	37995.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	9.72	15.21	14.8	13.49	10.26	18.49	34.85	25.2	15.61
Merged-chr19-11911258-1	chr19	11910758	11911758	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1141.0	NM_172635	225929.0	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	304.9	400.88	185.92	319.14	396.07	247.57	233.42	234.35	87.43
Merged-chr18-56407564-2	chr18	56407057	56408057	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360917, intron 1 of 13)	intron (NM_001360917, intron 1 of 13)	7217.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	4.0	3.23	5.55	5.4	4.67	0.0	5.28	2.21	2.5
Merged-chr2-115856053-1	chr2	115855553	115856553	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	208566.0	NM_001346044	17536.0	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	1.14	2.3	2.77	2.02	0.93	0.0	4.22	1.33	1.25
Merged-chr6-85391947-1	chr6	85391447	85392447	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17313.0	NM_001003955	52055.0	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	1.72	1.38	0.0	2.02	0.93	0.0	3.17	0.88	2.5
Merged-chr18-84684736-1	chr18	84684236	84685236	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 1 of 11)	intron (NM_023149, intron 1 of 11)	966.0	NM_023149	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	160.75	134.55	74.92	135.62	119.89	113.33	124.63	112.31	84.31
Merged-chrX-23600948-1	chrX	23600448	23601448	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-92103.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	5.72	1.84	0.92	0.0	4.67	4.02	3.17	2.65	5.0
Merged-chr15-88921597-2	chr15	88921055	88922055	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357736, intron 8 of 11)	intron (NM_001357736, intron 8 of 11)	32863.0	NM_001357736	239591.0	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	2.86	2.3	3.7	5.4	0.0	0.0	1.06	0.44	7.49
Merged-chr15-25625566-1	chr15	25625066	25626066	+	584.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019472, intron 1 of 40)	intron (NM_019472, intron 1 of 40)	3016.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	18.88	15.21	11.1	6.07	4.2	0.0	8.45	5.31	1.25
Merged-chr4-150582632-1	chr4	150582132	150583132	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	B1_Mus2|SINE|Alu	69542.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	48.62	52.07	41.62	52.63	50.38	36.97	50.7	57.48	44.97
Merged-chr15-88469033-1	chr15	88468533	88469533	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-131269.0	NM_027306	70073.0	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	1.72	4.61	2.77	2.7	1.87	1.61	2.11	1.77	8.12
Merged-chr19-59114454-1	chr19	59113954	59114954	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-38385.0	NM_001114312	71653.0	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	4.58	7.83	0.0	8.77	7.93	3.22	17.96	5.31	6.25
Merged-chr7-141100173-1	chr7	141099673	141100673	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023059, intron 1 of 9)	CpG	373.0	NM_023059	24058.0	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.57	4.15	0.0	2.7	1.4	3.22	4.22	0.88	6.25
Merged-chr4-102741678-1	chr4	102741178	102742178	+	584.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18457.0	NM_001285860	73094.0	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	9.15	3.23	6.47	3.37	5.6	4.02	1.06	1.77	2.5
Merged-chr13-113602084-2	chr13	113601587	113602587	+	583.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	ORR1B2|LTR|ERVL-MaLR	16477.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	65.21	59.44	69.37	121.45	76.97	87.61	124.63	112.75	81.81
Merged-chr18-4279341-2	chr18	4278842	4279842	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	73611.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	13.16	4.61	0.0	6.75	5.6	5.63	11.62	6.63	9.99
Merged-chr9-14860095-2	chr9	14859586	14860586	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001310734)	promoter-TSS (NM_001310734)	-124.0	NM_001310734	14608.0	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	4.58	2.76	6.47	4.72	4.2	3.22	1.06	1.77	5.0
Merged-chr5-66149645-2	chr5	66149140	66150140	+	583.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127382, intron 2 of 7)	intron (NM_001127382, intron 2 of 7)	1338.0	NM_001291226	245945.0	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	70.93	71.42	60.12	58.7	83.97	64.3	92.94	85.34	46.84
Merged-chr11-100425982-2	chr11	100425497	100426497	+	583.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026561, intron 8 of 8)	intron (NM_026561, intron 8 of 8)	10303.0	NM_001163481	14230.0	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	4.0	2.3	1.85	4.72	2.8	0.0	2.11	0.44	6.87
Merged-chr18-82784889-3	chr18	82784381	82785381	+	583.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25842.0	NR_045389	76961.0	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	44.62	62.21	24.05	46.56	31.72	25.72	80.27	88.43	45.59
Merged-chr12-21129652-2	chr12	21129150	21130150	+	583.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004364, intron 1 of 26)	intron (NM_001004364, intron 1 of 26)	17894.0	NM_001135192	211914.0	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.0	4.15	2.77	0.0	0.93	1.61	4.22	0.44	1.25
Merged-chr4-115984286-2	chr4	115983780	115984780	+	583.583374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33644.0	NM_010173	14073.0	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	3.43	3.69	3.7	2.7	2.8	1.61	4.22	0.88	9.37
Merged-chr5-31563786-2	chr5	31563275	31564275	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7622.0	NR_102275	100740.0	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	6.29	2.76	0.0	5.4	1.4	3.22	0.0	1.33	2.5
Merged-chr15-78589759-1	chr15	78589259	78590259	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7288.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	70.93	65.43	56.42	81.64	70.44	78.77	144.7	165.81	67.45
Merged-chr1-128675739-1	chr1	128675239	128676239	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83440.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	1.72	2.76	0.0	6.07	1.87	1.61	6.34	3.1	1.25
Merged-chr1-45817105-2	chr1	45816595	45817595	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028599, intron 13 of 20)	intron (NM_028599, intron 13 of 20)	21929.0	NM_028599	73674.0	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	17.16	19.35	12.95	13.49	10.26	9.65	14.79	6.19	11.24
Merged-chr1-34522438-1	chr1	34521938	34522938	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13210.0	NM_007685	12627.0	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	4.0	5.99	4.62	5.4	7.0	14.47	3.17	5.75	0.0
Merged-chr12-32340600-1	chr12	32340100	32341100	+	583.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38189.0	NM_001162903	72123.0	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	19.45	18.43	19.42	16.19	14.93	14.47	29.57	22.99	18.11
Merged-chr5-145280898-1	chr5	145280398	145281398	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2445.0	NM_001081431	666311.0	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	128.14	199.52	151.69	138.99	203.4	191.3	168.99	141.49	118.04
Merged-chr2-12389240-1	chr2	12388740	12389740	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355539, intron 1 of 6)	intron (NM_001355539, intron 1 of 6)	30220.0	NM_001355537	66960.0	Mm.34059	NM_024185	ENSMUSG00000026767	Mindy3	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958|Fam188a	MINDY lysine 48 deubiquitinase 3	protein-coding	2.29	9.22	0.92	2.7	3.27	1.61	5.28	4.42	1.25
Merged-chr14-41017663-1	chr14	41017163	41018163	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Kanga1|DNA|TcMar-Tc2	-3830.0	NM_001316737	70564.0	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	6.86	5.53	0.0	4.72	1.87	3.22	6.34	7.52	2.5
Merged-chr2-93192809-1	chr2	93192309	93193309	+	583.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356537, intron 2 of 8)	intron (NM_001356537, intron 2 of 8)	5261.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	1.14	0.92	3.7	4.72	3.27	0.0	9.51	3.98	7.49
Merged-chr16-37854842-2	chr16	37854383	37855383	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13517.0	NM_177093	320184.0	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	9.72	5.07	3.7	10.12	11.66	16.08	12.67	14.59	0.0
Merged-chr9-61435252-2	chr9	61434746	61435746	+	583.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62880.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.0	7.83	5.55	4.72	1.4	4.82	6.34	4.42	2.5
Merged-chr2-143844629-1	chr2	143844129	143845129	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291061, intron 4 of 7)	MLT1A1|LTR|ERVL-MaLR	18544.0	NM_009751	12075.0	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	4.58	8.29	6.47	6.07	3.27	8.04	2.11	3.98	4.37
Merged-chr18-9712376-1	chr18	9711876	9712876	+	583.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130449, intron 1 of 9)	intron (NM_130449, intron 1 of 9)	4728.0	NM_130449	140792.0	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	12.01	4.61	7.4	23.62	12.6	32.15	1.06	6.63	6.25
Merged-chr15-76724731-1	chr15	76724231	76725231	+	583.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_176828)	promoter-TSS (NM_176828)	-886.0	NM_176828	223665.0	Mm.291713	NM_145472	ENSMUSG00000116138	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	8.58	8.75	9.25	22.94	7.93	24.92	6.34	20.34	13.74
Merged-chr9-3001352-1	chr9	3000852	3001852	+	583.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	37391.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	36.04	252.97	238.64	62.07	289.7	252.39	139.42	153.43	271.67
Merged-chr13-45477468-3	chr13	45476946	45477946	+	583.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29998.0	NM_025508	66355.0	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	8.58	8.75	3.7	5.4	4.67	1.61	4.22	6.63	1.25
Merged-chr7-4657711-2	chr7	4657187	4658187	+	583.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	L2c|LINE|L2	1263.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	54.35	64.05	43.47	30.36	21.93	55.46	61.26	36.26	51.21
Merged-chr10-99279729-1	chr10	99279229	99280229	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16498.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	6.29	5.53	3.7	4.05	0.47	0.0	5.28	1.33	1.25
Merged-chr13-37851854-1	chr13	37851354	37852354	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	24461.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	17.16	27.65	29.6	29.01	36.39	35.37	20.07	20.78	32.48
Merged-chr17-8390686-1	chr17	8390186	8391186	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161832, intron 2 of 10)	intron (NM_001161832, intron 2 of 10)	-1218.0	NR_045795	100504601.0	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA	4.0	3.69	5.55	2.02	4.2	3.22	1.06	2.21	5.0
Merged-chr11-83058086-1	chr11	83057586	83058586	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7026.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	20.02	17.05	11.1	22.94	11.2	18.49	27.46	29.63	16.24
Merged-chr14-44847950-1	chr14	44847450	44848450	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	11425.0	NM_008962	19214.0	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	2.29	0.92	0.92	0.67	0.47	1.61	0.0	2.21	1.25
Merged-chr6-48830591-1	chr6	48830091	48831091	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10397.0	NM_023056	65963.0	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	66.36	67.27	99.89	42.51	30.79	45.82	71.82	57.92	68.07
Merged-chr11-60114432-1	chr11	60113932	60114932	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9419.0	NM_009021	19377.0	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	18.88	15.67	26.82	45.21	26.12	28.94	29.57	18.57	18.11
Merged-chr4-3512564-1	chr4	3512064	3513064	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MB3|LINE|L1	-24526.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	32.61	38.71	36.07	36.43	31.72	23.31	54.92	49.08	43.72
Merged-chr15-62223604-1	chr15	62223104	62224104	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 3 of 6)	intron (NR_132746, intron 3 of 6)	-4153.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	8.58	5.07	5.55	3.37	4.2	8.84	8.45	2.65	5.0
Merged-chr10-85829436-1	chr10	85828936	85829936	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-42395.0	NM_133993	103136.0	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	3.43	5.53	1.85	10.8	3.27	3.22	3.17	0.0	1.25
Merged-chr12-73545891-1	chr12	73545391	73546391	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178715, exon 1 of 1)	exon (NM_178715, exon 1 of 1)	504.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	5.72	2.76	1.85	2.02	1.4	0.0	2.11	0.44	4.37
Merged-chr15-72873278-2	chr15	72872782	72873782	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	L1MB5|LINE|L1	-62958.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	18.88	30.41	38.85	26.99	19.13	35.37	38.02	29.18	17.49
Merged-chr8-94528375-1	chr8	94527875	94528875	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4653.0	NM_153507	234577.0	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	1.14	3.69	0.92	1.35	3.27	3.22	1.06	1.77	3.75
Merged-chr1-9850286-1	chr1	9849786	9850786	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037759, intron 1 of 16)	L2a|LINE|L2	2005.0	NM_001037759	170755.0	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	8.01	12.9	20.35	4.72	7.93	9.65	8.45	2.65	9.99
Merged-chr5-96966362-1	chr5	96965862	96966862	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31327.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	14.87	7.83	4.62	2.7	7.0	6.43	7.39	5.75	3.75
Merged-chr11-69043878-1	chr11	69043378	69044378	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1759.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	49.2	47.46	47.17	53.98	26.12	46.62	66.54	80.47	67.45
Merged-chr15-97593911-1	chr15	97593411	97594411	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111911.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	8.58	10.6	11.1	20.92	11.2	12.06	23.24	22.99	21.86
Merged-chr5-76075568-1	chr5	76075068	76076068	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64705.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	2.29	5.07	1.85	6.07	3.27	0.0	3.17	7.96	6.25
Merged-chrX-134580988-1	chrX	134580488	134581488	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013482, intron 1 of 18)	intron (NM_013482, intron 1 of 18)	2152.0	NM_013482	12229.0	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	14.3	18.89	24.05	20.92	14.0	19.29	30.63	27.86	15.61
Merged-chr5-108105696-1	chr5	108105196	108106196	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152817, intron 16 of 16)	intron (NR_152817, intron 16 of 16)	26924.0	NM_001347383	73130.0	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik|p24gamma2	transmembrane p24 trafficking protein 5	protein-coding	12.01	13.36	7.4	5.4	7.0	11.25	14.79	17.24	11.87
Merged-chr3-121294406-1	chr3	121293906	121294906	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155539, intron 1 of 2)	B2_Mm2|SINE|B2	2666.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	6.29	4.15	5.55	8.77	5.13	1.61	7.39	3.1	3.75
Merged-chr6-108664988-1	chr6	108664488	108665488	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011498, exon 5 of 5)	exon (NM_011498, exon 5 of 5)	-4054.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	7.44	2.3	3.7	9.45	0.0	4.02	2.11	0.44	2.5
Merged-chr1-55398097-1	chr1	55397597	55398597	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7849.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.29	4.61	0.0	4.05	4.67	3.22	3.17	6.19	6.25
Merged-chr17-31288843-1	chr17	31288343	31289343	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-6640.0	NM_153062	224674.0	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	8.58	8.75	1.85	8.77	7.0	1.61	16.9	8.4	6.87
Merged-chr4-132411847-1	chr4	132411347	132412347	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161797, intron 2 of 12)	intron (NM_001161797, intron 2 of 12)	10599.0	NM_001161797	100169.0	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	14.3	22.12	16.65	16.87	10.73	12.86	21.12	11.5	8.12
Merged-chr5-72950418-1	chr5	72949918	72950918	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153567, intron 3 of 8)	Lx8|LINE|L1	36056.0	NM_153567	75991.0	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	5.15	3.69	3.7	5.4	10.26	4.82	5.28	4.86	6.25
Merged-chr11-55206042-1	chr11	55205542	55206542	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153139, intron 1 of 10)	L3|LINE|CR1	1702.0	NM_153139	215335.0	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	20.59	21.2	15.72	26.99	20.53	28.13	28.52	31.84	23.11
Merged-chr4-123200849-1	chr4	123200349	123201349	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001085502)	promoter-TSS (NM_001085502)	-704.0	NM_001085502	230718.0	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	18.31	14.75	14.8	5.4	0.93	1.61	1.06	1.33	5.62
Merged-chr18-4344544-1	chr18	4344044	4345044	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007746, intron 2 of 7)	intron (NM_007746, intron 2 of 7)	8409.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	25.17	28.57	26.82	35.09	21.93	36.97	35.91	27.41	33.72
Merged-chr6-136548569-1	chr6	136548069	136549069	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	29718.0	NM_019426	54343.0	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	37.76	46.08	23.12	48.58	37.32	27.33	24.29	17.69	18.74
Merged-chr12-84317473-2	chr12	84316987	84317987	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252582, intron 1 of 7)	CpG	628.0	NM_001252583	52708.0	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	51.48	46.08	45.32	45.88	42.92	65.11	61.26	41.12	33.72
Merged-chr11-69982536-1	chr11	69982036	69983036	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026017, intron 1 of 7)	intron (NM_026017, intron 1 of 7)	-1301.0	NM_018740	54351.0	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	18.31	14.28	22.2	11.47	6.06	20.9	12.67	15.03	22.48
Merged-chr11-83843685-1	chr11	83843185	83844185	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7184.0	NM_001291268	21410.0	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	6.29	1.38	1.85	6.75	2.8	6.43	4.22	4.86	3.75
Merged-chr4-115898092-1	chr4	115897592	115898592	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001357060, exon 2 of 2)	exon (NM_001357060, exon 2 of 2)	7426.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	4.0	2.76	1.85	0.0	3.27	0.0	4.22	1.33	3.75
Merged-chr17-15632198-1	chr17	15631698	15632698	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045431, intron 1 of 3)	intron (NR_045431, intron 1 of 3)	410.0	NR_045431	71008.0	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	6.29	4.15	7.4	4.05	1.87	6.43	3.17	1.77	3.75
Merged-chr1-147054752-1	chr1	147054252	147055252	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	557065.0	NM_001145807	215378.0	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.0	1.38	0.0	2.7	4.67	0.0	3.17	2.21	7.49
Merged-chr9-116172476-1	chr9	116171976	116172976	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	B4A|SINE|B4	2887.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	29.17	17.51	19.42	33.74	17.73	24.11	10.56	4.86	6.25
Merged-chr14-103962516-1	chr14	103962016	103963016	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	64626.0	NR_045953	73877.0	Mm.399172	NR_045953	ENSMUSG00000115727	4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	1.14	2.76	3.7	4.05	5.6	0.8	1.06	1.77	7.49
Merged-chr10-111131922-1	chr10	111131422	111132422	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32880.0	NM_001003717	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	12.01	17.97	10.17	13.49	11.2	11.25	14.79	7.96	6.25
Merged-chr1-40354802-1	chr1	40354302	40355302	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 8 of 10)	intron (NM_001356478, intron 8 of 10)	30213.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.15	3.69	2.77	12.14	4.67	0.0	7.39	1.77	5.0
Merged-chr11-49702240-1	chr11	49701740	49702740	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_212484, intron 2 of 11)	intron (NM_212484, intron 2 of 11)	414.0	NM_001290741	104625.0	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	21.74	20.74	14.8	15.52	8.86	16.08	19.01	11.94	26.85
Merged-chr13-41932507-1	chr13	41932007	41933007	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66592.0	NR_033545	100038577.0	Mm.387093	NR_033545	ENSMUSG00000113856	Gm10790	-	predicted gene 10790	ncRNA	6.86	4.15	12.95	5.4	8.86	3.22	2.11	6.63	8.74
Merged-chr2-46444115-2	chr2	46443624	46444624	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	747519.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	26.31	42.39	37.0	24.96	42.92	33.76	34.85	45.1	22.48
Merged-chr8-128701176-1	chr8	128700676	128701676	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010578, intron 1 of 15)	Lx3_Mus|LINE|L1	15522.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	9.72	9.22	3.7	9.45	7.46	16.08	10.56	10.61	10.62
Merged-chr17-50975137-1	chr17	50974637	50975637	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 4 of 21)	L1_Mus4|LINE|L1	184241.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	2.86	0.46	0.0	4.05	4.67	6.43	5.28	3.1	6.25
Merged-chr1-105865124-1	chr1	105864624	105865624	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	84401.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	18.31	20.27	12.02	20.24	12.13	18.49	26.4	23.88	17.49
Merged-chr5-64233489-1	chr5	64232989	64233989	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	3132.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	33.18	29.03	26.82	43.18	33.12	50.64	108.79	61.46	44.97
Merged-chr10-57448071-1	chr10	57447571	57448571	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38282.0	NR_045353	74928.0	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	4.58	3.69	5.55	8.77	5.6	2.41	6.34	8.4	6.87
Merged-chr3-103744490-1	chr3	103743990	103744990	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_125731)	TTS (NR_125731)	-6489.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	20.59	27.65	36.07	16.87	7.93	8.04	14.79	15.03	13.74
Merged-chr18-56364441-1	chr18	56363941	56364941	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-35899.0	NM_001360917	107022.0	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.57	5.07	1.85	2.7	2.8	3.22	2.11	1.77	2.5
Merged-chr5-134379048-1	chr5	134378548	134379548	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081462, intron 20 of 29)	B2_Mm1a|SINE|B2	52594.0	NR_039544	100628570.0		NR_039544	ENSMUSG00000093311	Mir3965	mmu-mir-3965|mu-mir-3965	microRNA 3965	ncRNA	0.0	1.38	6.47	0.67	2.33	0.0	1.06	2.65	8.74
Merged-chr17-88439789-1	chr17	88439289	88440289	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355743)	promoter-TSS (NM_001355743)	-915.0	NM_001355743	14236.0	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	7.44	14.75	6.47	17.54	19.59	24.92	12.67	11.5	24.98
Merged-chr6-47799262-1	chr6	47798762	47799762	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009787, exon 8 of 10)	exon (NM_009787, exon 8 of 10)	4390.0	NR_030485	735289.0		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.57	3.69	3.7	2.02	2.8	8.04	3.17	0.44	3.75
Merged-chr12-51704812-1	chr12	51704312	51705312	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329698, intron 1 of 5)	intron (NM_001329698, intron 1 of 5)	-12898.0	NM_052973	94186.0	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	15.45	24.42	3.7	24.29	6.53	9.65	20.07	12.38	15.61
Merged-chr9-65124021-1	chr9	65123521	65124521	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_020043, exon 7 of 20)	exon (NM_020043, exon 7 of 20)	-17133.0	NM_008988	19289.0	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.0	2.3	1.85	3.37	0.93	1.61	1.06	1.77	1.25
Merged-chr15-51990621-1	chr15	51990121	51991121	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009009, intron 1 of 13)	intron (NM_009009, intron 1 of 13)	1139.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	54.35	61.28	34.22	32.39	39.65	20.9	60.2	41.12	26.85
Merged-chr13-5850435-1	chr13	5849935	5850935	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7657.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	11.44	10.14	11.1	7.42	11.66	4.82	7.39	4.42	7.49
Merged-chr5-105800081-1	chr5	105799581	105800581	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122768, intron 2 of 2)	intron (NM_001122768, intron 2 of 2)	-76487.0	NR_030777	54367.0	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	4.0	5.07	9.25	16.87	4.2	8.04	6.34	1.33	7.49
Merged-chr18-34163206-1	chr18	34162706	34163706	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57778.0	NM_007462	11789.0	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	6.86	5.07	3.7	24.96	9.8	3.22	19.01	13.27	3.12
Merged-chr7-25652562-1	chr7	25652062	25653062	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007533, intron 1 of 8)	intron (NM_007533, intron 1 of 8)	6199.0	NM_007533	12039.0	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	13.73	11.06	0.92	4.72	2.8	6.43	8.45	3.54	9.37
Merged-chr16-76365360-1	chr16	76364860	76365860	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	7689.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	98.97	123.49	97.12	63.42	36.85	49.83	70.76	84.9	39.35
Merged-chr10-3741175-2	chr10	3740693	3741693	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159942, intron 1 of 16)	intron (NM_001159942, intron 1 of 16)	816.0	NM_001159942	213783.0	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	4.58	3.69	1.85	3.37	3.27	0.8	6.34	2.65	3.75
Merged-chr8-46628082-1	chr8	46627582	46628582	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284409, intron 1 of 6)	intron (NM_001284409, intron 1 of 6)	10791.0	NM_009810	12367.0	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	16.02	12.9	12.95	11.47	4.67	14.47	9.51	15.03	11.87
Merged-chr1-193273140-1	chr1	193272640	193273640	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008059)	promoter-TSS (NM_008059)	48.0	NM_008059	14373.0	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	4.58	0.92	1.85	0.67	1.87	1.61	6.34	1.77	5.62
Merged-chr2-101810775-1	chr2	101810275	101811275	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	intron (NM_001355625, intron 1 of 8)	-13068.0	NM_001083810	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	8.58	6.91	8.32	4.72	8.4	11.25	16.9	11.05	12.49
Merged-chr7-80159020-1	chr7	80158520	80159520	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27821.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	4.58	5.07	1.85	3.37	1.87	6.43	4.22	2.21	1.87
Merged-chr11-49248852-1	chr11	49248352	49249352	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110149, intron 1 of 1)	intron (NM_001110149, intron 1 of 1)	1375.0	NM_001110149	17308.0	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	26.31	34.56	28.67	36.43	34.99	40.99	25.35	29.18	32.48
Merged-chr14-57684810-1	chr14	57684310	57685310	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19854.0	NM_020506	57258.0	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	2.86	5.07	1.85	2.7	3.73	0.0	3.17	3.54	2.5
Merged-chr15-98978067-1	chr15	98977567	98978567	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7898.0	NR_045991	75951.0	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	37.76	28.11	23.12	60.05	30.32	49.83	34.85	27.41	22.48
Merged-chr15-74679320-1	chr15	74678820	74679820	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6750.0	NM_018790	11838.0	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	2.29	3.69	0.92	6.07	6.53	10.45	1.06	0.88	7.49
Merged-chr9-57071322-1	chr9	57070822	57071822	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001110351)	promoter-TSS (NM_001110351)	644.0	NR_045886	100038566.0	Mm.361900	NR_045886		Gm10658	-	predicted gene 10658	ncRNA	16.59	17.05	29.6	16.87	10.73	24.11	13.73	25.2	21.86
Merged-chr18-79288961-1	chr18	79288461	79289461	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-179570.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	2.29	4.61	0.0	4.05	4.2	9.65	2.11	3.98	9.37
Merged-chr7-45452363-1	chr7	45451863	45452863	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_030678, intron 14 of 15)	B3|SINE|B2	7523.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	10.87	5.99	9.25	4.72	3.73	3.22	5.28	4.86	4.37
Merged-chr1-57436530-1	chr1	57436030	57437030	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29856.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	7.44	5.07	1.85	15.52	10.73	14.47	4.22	1.33	2.5
Merged-chr15-6056964-1	chr15	6056464	6057464	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12260.0	NR_155429	105245876.0	Mm.128197	NR_155428		Gm41259	-	predicted gene, 41259	ncRNA	2.86	4.61	0.0	6.75	3.73	3.22	6.34	1.33	9.37
Merged-chr5-31821351-1	chr5	31820851	31821851	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 5 of 11)	intron (NM_144541, intron 5 of 11)	123301.0	NM_144541	107976.0	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	6.29	4.61	3.7	4.05	0.93	5.63	8.45	0.0	5.62
Merged-chr6-125527884-1	chr6	125527384	125528384	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25064.0	NM_011708	22371.0	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	4.58	4.15	1.85	3.37	3.27	1.61	7.39	5.75	3.75
Merged-chr13-35512198-1	chr13	35511698	35512698	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L4_C_Mam|LINE|RTE-X	-147664.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	10.3	15.67	13.87	5.4	7.0	17.68	9.51	9.73	12.49
Merged-chr7-19507221-1	chr7	19506721	19507721	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177692, exon 2 of 2)	exon (NM_177692, exon 2 of 2)	1110.0	NM_177692	232946.0	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	69.22	87.09	76.77	57.35	59.25	73.95	79.21	91.09	51.84
Merged-chr3-106498352-1	chr3	106497852	106498852	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001093754, intron 8 of 11)	intron (NM_001093754, intron 8 of 11)	12312.0	NM_028110	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	14.87	10.14	27.75	10.12	6.53	13.66	16.9	14.59	13.74
Merged-chr1-10266992-1	chr1	10266492	10267492	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-34322.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	8.58	8.75	18.5	8.1	9.33	8.04	17.96	6.19	18.74
Merged-chr1-178391548-1	chr1	178391048	178392048	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14470.0	NM_026626	68226.0	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	8.01	8.75	3.7	4.72	7.0	0.0	3.17	1.77	2.5
Merged-chr6-122343915-1	chr6	122343415	122344415	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3688.0	NM_001271579	13619.0	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic 1	protein-coding	6.29	5.53	3.7	4.05	3.73	1.61	1.06	9.29	2.5
Merged-chr6-87723791-1	chr6	87723291	87724291	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR3|SINE|MIR	-7078.0	NM_001159697	58229.0	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	62.93	31.79	38.85	72.87	43.39	30.54	30.63	30.07	28.73
Merged-chr9-66646434-1	chr9	66645934	66646934	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-53319.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	2.29	2.3	3.7	3.37	1.4	0.0	3.17	1.33	2.5
Merged-chr16-37533567-1	chr16	37533067	37534067	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355727, intron 2 of 4)	intron (NM_001355727, intron 2 of 4)	6222.0	NM_028812	74197.0	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	6.86	3.69	12.95	7.42	7.93	1.61	4.22	3.54	5.0
Merged-chr13-112999057-1	chr13	112998557	112999557	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037914, exon 7 of 7)	exon (NM_001037914, exon 7 of 7)	5189.0	NM_001037914	622408.0	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	11.44	4.15	1.85	5.4	4.67	3.22	2.11	1.77	5.0
Merged-chr9-45911812-1	chr9	45911312	45912312	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104055, intron 5 of 17)	intron (NR_104055, intron 5 of 17)	-4901.0	NM_001361112	235315.0	Mm.220945	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	13.73	13.82	7.4	13.49	8.4	16.08	12.67	11.5	9.99
Merged-chr2-137571081-1	chr2	137570581	137571581	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-454561.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	3.43	4.61	8.32	5.4	7.46	3.22	3.17	2.21	7.49
Merged-chr15-99083475-1	chr15	99082975	99083975	+	583.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_030159)	TTS (NM_030159)	2670.0	NR_105925	102465579.0		NR_105925	ENSMUSG00000098698	Mir6960	Gm27620|mmu-mir-6960	microRNA 6960	ncRNA	5.15	2.3	0.0	2.7	1.87	2.41	3.17	0.0	5.0
Merged-chr17-55957354-1	chr17	55956854	55957854	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_015766)	TTS (NM_015766)	-1833.0	NM_028381	72886.0	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	8.58	16.13	8.32	9.45	5.13	4.82	10.56	7.96	8.74
Merged-chrX-7313744-2	chrX	7313251	7314251	+	583.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	5607.0	NM_001243762	12728.0	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	9.15	24.42	12.95	14.84	8.4	17.68	16.9	9.29	14.36
Merged-chr7-99440380-1	chr7	99439880	99440880	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201352, intron 5 of 17)	intron (NM_201352, intron 5 of 17)	-25624.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	4.58	2.76	5.55	6.07	7.46	17.68	3.17	7.96	4.37
Merged-chr2-151941430-1	chr2	151940930	151941930	+	583.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009641, intron 7 of 8)	intron (NM_009641, intron 7 of 8)	26187.0	NR_035478	100316704.0		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	3.43	2.76	0.0	0.67	1.4	0.0	1.06	0.88	2.5
Merged-chr1-180434315-3	chr1	180433794	180434794	+	582.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001081227, exon 4 of 4)	3' UTR (NM_001081227, exon 4 of 4)	49210.0	NM_001081227	381310.0	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	1.14	5.07	5.55	5.4	0.93	0.0	2.11	1.77	1.25
Merged-chr13-5866857-3	chr13	5866377	5867377	+	582.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011803, intron 3 of 3)	intron (NM_011803, intron 3 of 3)	5388.0	NM_011803	23849.0	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	33.18	39.63	38.85	26.99	16.33	37.78	28.52	17.24	26.85
Merged-chr5-146904607-2	chr5	146904109	146905109	+	582.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44048.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.58	2.76	5.55	4.05	1.87	3.22	6.34	1.77	4.37
Merged-chr3-107094234-2	chr3	107093735	107094735	+	582.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7332.0	NM_008417	16490.0	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	4.58	2.76	0.0	5.4	7.93	6.43	7.39	2.65	1.25
Merged-chr11-64459427-1	chr11	64458927	64459927	+	582.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178870, intron 1 of 1)	intron (NM_178870, intron 1 of 1)	-22753.0	NR_028445	654805.0	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	6.29	5.99	5.55	8.1	6.06	8.04	10.56	11.94	5.62
Merged-chr2-144198861-1	chr2	144198361	144199361	+	582.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9571.0	NR_136884	433481.0	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	4.58	4.61	0.92	11.47	3.27	2.41	15.84	7.96	5.62
Merged-chr2-34755069-2	chr2	34754573	34755573	+	582.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_151469, exon 1 of 27)	non-coding (NR_151469, exon 1 of 27)	159.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	34.32	36.4	32.37	46.56	34.06	49.03	42.25	40.24	24.36
Merged-chr11-98355939-2	chr11	98355432	98356432	+	582.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313970, intron 5 of 6)	intron (NM_001313970, intron 5 of 6)	2351.0	NR_045477	69338.0	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	3.43	2.3	5.55	4.05	1.4	1.61	2.11	0.88	2.5
Merged-chr13-23570373-1	chr13	23569873	23570873	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_178187)	TTS (NM_178187)	847.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	113.84	108.75	101.74	112.68	103.1	98.87	110.9	149.89	84.31
Merged-chr5-89860438-2	chr5	89859943	89860943	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	22891.0	NM_177872	330119.0	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	1.14	4.61	3.7	5.4	2.33	4.02	4.22	4.42	6.25
Merged-chr10-79850156-1	chr10	79849656	79850656	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 3 of 4)	L1MB8|LINE|L1	-4276.0	NM_001077363	19205.0	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	8.01	7.37	17.57	12.14	8.86	4.82	7.39	3.98	5.62
Merged-chr7-123367871-2	chr7	123367397	123368397	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	2018.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	53.2	63.59	36.07	60.05	49.92	64.3	49.64	59.25	54.96
Merged-chr12-55459062-1	chr12	55458562	55459562	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33585.0	NM_010907	18035.0	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	22.88	31.33	24.97	21.59	21.93	20.09	25.35	13.71	29.98
Merged-chr11-17154207-1	chr11	17153707	17154707	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-5091.0	NM_024459	19058.0	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	1.14	7.83	3.7	8.1	3.27	3.22	2.11	0.88	3.75
Merged-chr2-109231478-1	chr2	109230978	109231978	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029790, intron 2 of 5)	intron (NM_029790, intron 2 of 5)	46812.0	NM_029790	76894.0	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	4.58	5.53	6.47	5.4	6.06	4.82	6.34	11.05	2.5
Merged-chr11-109585233-2	chr11	109584735	109585735	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145940, intron 4 of 12)	intron (NM_145940, intron 4 of 12)	26154.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	8.01	3.23	0.92	2.7	0.93	1.61	1.06	3.1	7.49
Merged-chr6-51123203-1	chr6	51122703	51123703	+	582.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	146707.0	NR_029719	387166.0		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	1.14	2.3	0.0	4.72	2.8	1.61	5.28	3.1	5.0
Merged-chr3-93494209-1	chr3	93493709	93494709	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25455.0	NM_027762	71325.0	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	1.72	1.84	3.7	2.02	0.93	1.61	0.0	2.65	0.0
Merged-chr9-39629297-1	chr9	39628797	39629797	+	582.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6172.0	NM_146279	258276.0	Mm.390137	NM_146279	ENSMUSG00000059867	Olfr960	MOR224-12	olfactory receptor 960	protein-coding	1.14	1.38	0.0	1.35	1.87	3.22	3.17	2.21	3.75
Merged-chr10-81358366-2	chr10	81357859	81358859	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028657, intron 1 of 9)	intron (NM_028657, intron 1 of 9)	868.0	NM_028657	73822.0	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1|gr	major facilitator superfamily domain containing 12	protein-coding	135.58	65.43	50.87	134.27	98.43	64.3	109.84	111.43	46.22
Merged-chr11-102320281-2	chr11	102319728	102320728	+	582.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1132.0	NM_011551	21429.0	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	36.61	32.72	36.07	54.65	33.59	49.03	48.58	41.56	31.85
Merged-chr6-90490150-1	chr6	90489650	90490650	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27574.0	NM_023184	66277.0	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	32.04	13.82	22.2	22.94	20.53	13.66	14.79	11.05	6.25
Merged-chr7-19888015-1	chr7	19887515	19888515	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177036)	promoter-TSS (NM_177036)	-50.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	4.58	3.69	0.0	3.37	1.4	7.23	5.28	3.98	3.75
Merged-chr15-9075003-1	chr15	9074503	9075503	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040395, intron 1 of 12)	intron (NM_001040395, intron 1 of 12)	3743.0	NM_001040395	68646.0	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	7.44	5.07	10.17	6.07	6.06	6.43	4.22	1.77	3.75
Merged-chr11-5102521-1	chr11	5102021	5103021	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177370, intron 4 of 8)	intron (NM_177370, intron 4 of 8)	2356.0	NM_001290493	279766.0	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	3.43	3.23	5.55	4.72	1.4	6.43	8.45	2.65	0.0
Merged-chr4-19580739-1	chr4	19580239	19581239	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025476, intron 2 of 9)	B4A|SINE|B4	5673.0	NM_025476	66302.0	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	9.15	4.61	3.7	5.4	9.8	3.22	10.56	5.31	6.25
Merged-chr6-34869009-2	chr6	34868493	34869493	+	582.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_197986, intron 1 of 1)	PB1D11|SINE|Alu	5847.0	NM_197986	68487.0	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	226.53	240.99	212.74	232.78	219.73	229.88	218.63	244.08	137.4
Merged-chr11-102267604-2	chr11	102267087	102268087	+	582.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1236.0	NM_148953	217217.0	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	1.14	1.38	1.85	3.37	0.47	1.61	3.17	0.44	2.5
Merged-chr19-5106067-1	chr19	5105567	5106567	+	582.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029576, intron 1 of 5)	intron (NM_029576, intron 1 of 5)	929.0	NM_029576	76308.0	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	23.45	24.88	19.42	37.11	15.39	57.87	42.25	26.53	21.23
Merged-chr11-94970350-1	chr11	94969850	94970850	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009161, intron 7 of 10)	intron (NM_009161, intron 7 of 10)	2757.0	NM_018792	54388.0	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	4.0	1.38	2.77	1.35	0.0	0.0	7.39	0.44	5.0
Merged-chr3-108289144-1	chr3	108288644	108289644	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019972, intron 1 of 19)	intron (NM_019972, intron 1 of 19)	5080.0	NM_019972	20661.0	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	17.73	19.35	33.3	6.75	9.8	6.43	3.17	5.31	2.5
Merged-chr9-47628302-1	chr9	47627802	47628802	+	582.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	97950.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	89.24	113.35	73.07	99.86	88.64	96.45	113.01	151.22	61.2
Merged-chr6-117828445-1	chr6	117827945	117828945	+	582.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12736.0	NM_001346649	232337.0	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	4.58	1.38	0.92	3.37	1.4	0.0	2.11	2.65	3.12
Merged-chr4-100998333-3	chr4	100997837	100998837	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198037, intron 26 of 26)	intron (NM_198037, intron 26 of 26)	-70701.0	NM_183024	242570.0	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	2.29	2.3	5.55	4.05	3.27	0.0	1.06	5.31	3.75
Merged-chr9-40821513-1	chr9	40821013	40822013	+	582.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20240.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	5.15	3.23	1.85	1.35	0.47	2.41	10.56	1.33	1.87
Merged-chr13-22042505-2	chr13	22041993	22042993	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178198)	promoter-TSS (NM_178198)	456.0	NM_178186	319167.0	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	125.85	182.01	108.22	128.87	115.23	140.66	126.74	223.74	108.04
Merged-chr2-19528973-2	chr2	19528480	19529480	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027600, intron 4 of 16)	intron (NM_027600, intron 4 of 16)	24930.0	NM_027600	70909.0	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	2.86	5.99	0.0	2.7	4.2	0.0	3.17	0.0	0.0
Merged-chr8-26687798-2	chr8	26687306	26688306	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	136617.0	NR_045904	72316.0	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	42.33	51.15	36.07	35.76	37.79	40.19	73.93	58.81	46.22
Merged-chr3-95228246-2	chr3	95227727	95228727	+	582.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172395)	promoter-TSS (NM_172395)	-197.0	NM_172395	57912.0	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	81.8	50.69	57.35	45.21	40.59	53.05	81.33	87.55	51.21
Merged-chr5-147052125-1	chr5	147051625	147052625	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	24447.0	NM_080795	140887.0	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	13.73	17.51	16.65	8.77	4.67	4.82	5.28	3.1	1.25
Merged-chr9-43096488-1	chr9	43095988	43096988	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359232, intron 1 of 40)	intron (NM_001359232, intron 1 of 40)	9230.0	NM_001359232	69632.0	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	4.58	3.23	0.0	5.4	0.93	3.22	4.22	1.33	3.75
Merged-chr6-119481079-1	chr6	119480579	119481579	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133940, exon 1 of 1)	3' UTR (NM_133940, exon 1 of 1)	1411.0	NM_133940	101358.0	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	38.9	44.7	31.45	32.39	29.86	32.96	32.74	51.73	25.61
Merged-chr15-96539120-1	chr15	96538620	96539620	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-78277.0	NM_028148	72193.0	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	2.29	0.0	0.0	2.02	2.33	4.82	3.17	2.65	2.5
Merged-chr4-141454709-1	chr4	141454209	141455209	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009541, intron 2 of 15)	intron (NM_009541, intron 2 of 15)	10036.0	NM_009541	22642.0	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	4.58	5.99	5.55	6.75	3.27	3.22	9.51	2.65	8.74
Merged-chr10-14082546-2	chr10	14082042	14083042	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010437, intron 2 of 8)	LTR88b|LTR|Gypsy?	116163.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	4.58	2.76	7.4	6.75	4.2	3.22	3.17	5.75	11.87
Merged-chr2-120661084-1	chr2	120660584	120661584	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51489.0	NM_001290807	66296.0	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	33.75	25.8	34.22	45.88	31.26	38.58	50.7	49.52	29.98
Merged-chr9-22388045-1	chr9	22387545	22388545	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028390, intron 1 of 23)	intron (NM_028390, intron 1 of 23)	1161.0	NM_028390	68743.0	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	10.87	4.15	4.62	8.77	10.73	2.41	9.51	10.17	12.49
Merged-chr12-32911006-1	chr12	32910506	32911506	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	42783.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.29	2.3	0.0	1.35	2.8	2.41	1.06	0.88	0.62
Merged-chr17-45748642-1	chr17	45748142	45749142	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	14136.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	2.86	2.3	0.0	1.35	3.27	3.22	3.17	1.33	8.74
Merged-chr12-112594343-1	chr12	112593843	112594843	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_198411, intron 1 of 22)	intron (NM_198411, intron 1 of 22)	5559.0	NM_198411	70435.0	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	66.36	82.48	47.17	82.99	63.91	59.48	65.48	69.42	49.96
Merged-chr7-98962722-1	chr7	98962222	98963222	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	MER20|DNA|hAT-Charlie	123877.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.72	2.76	3.7	7.42	2.8	12.06	2.11	5.75	1.87
Merged-chr2-126397690-1	chr2	126397190	126398190	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001080944, exon 13 of 28)	exon (NM_001080944, exon 13 of 28)	93863.0	NM_001080944	241633.0	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	10.3	15.67	12.02	9.45	14.0	8.04	3.17	6.63	6.25
Merged-chr10-80901793-1	chr10	80901293	80902293	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013895)	promoter-TSS (NM_013895)	-824.0	NM_013895	30055.0	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	20.02	17.97	14.8	18.22	13.53	10.45	16.9	16.36	14.36
Merged-chr12-72442107-1	chr12	72441607	72442607	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001142729)	promoter-TSS (NM_001142729)	-142.0	NM_001142729	78257.0	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	8.01	3.23	3.7	7.42	0.93	1.61	3.17	3.54	7.49
Merged-chr12-102162998-1	chr12	102162498	102163498	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	34271.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	1.14	3.23	3.7	3.37	2.8	1.61	2.11	2.21	5.0
Merged-chr10-94381833-1	chr10	94381333	94382333	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359762, intron 1 of 4)	intron (NM_001359762, intron 1 of 4)	69884.0	NM_001359762	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	36.04	23.04	24.97	46.56	37.32	44.21	34.85	30.95	23.73
Merged-chr1-63659874-1	chr1	63659374	63660374	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081658, intron 9 of 14)	intron (NM_001081658, intron 9 of 14)	27053.0	NM_001081658	241073.0	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	1.72	2.76	0.0	2.7	0.93	0.0	5.28	2.65	0.0
Merged-chr4-12483206-1	chr4	12482706	12483706	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-311191.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	4.0	5.53	0.0	5.4	4.67	3.22	2.11	2.21	3.75
Merged-chr11-87523699-1	chr11	87523199	87524199	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199293, intron 18 of 30)	intron (NM_001199293, intron 18 of 30)	-54690.0	NM_001361936	18952.0	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|Pnutl2	septin 4	protein-coding	5.72	4.15	3.7	2.7	1.4	9.65	3.17	5.75	3.75
Merged-chr17-29474214-2	chr17	29473704	29474704	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16841.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	11.44	4.61	0.0	4.05	0.47	0.0	6.34	3.98	3.12
Merged-chr14-69824920-1	chr14	69824420	69825420	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	tRNA-Ala-GCG|tRNA|tRNA	-15487.0	NM_028560	73523.0	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	18.88	13.36	7.4	14.84	11.2	16.88	20.07	9.29	0.0
Merged-chr16-89906016-1	chr16	89905516	89906516	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009384, intron 3 of 27)	B3|SINE|B2	54811.0	NM_009384	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	4.0	0.92	1.85	4.05	1.4	1.61	3.17	0.0	0.62
Merged-chr17-47244386-1	chr17	47243886	47244886	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001097623, intron 4 of 19)	ID_B1|SINE|B4	14156.0	NM_172622	224829.0	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	9.15	5.99	11.1	9.45	11.66	10.45	7.39	5.31	2.5
Merged-chr3-84015808-1	chr3	84015308	84016308	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172681, intron 3 of 34)	intron (NM_172681, intron 3 of 34)	24353.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	9.72	2.76	1.85	5.4	1.4	5.63	2.11	1.77	7.49
Merged-chr10-103028652-1	chr10	103028152	103029152	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_172553, exon 1 of 4)	5' UTR (NM_172553, exon 1 of 4)	125.0	NM_172553	216285.0	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	1.72	1.38	1.85	5.4	0.0	0.0	2.11	1.77	3.75
Merged-chr15-63923239-1	chr15	63922739	63923739	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_029414, intron 8 of 10)	intron (NR_029414, intron 8 of 10)	8778.0	NR_029414	74460.0	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	8.01	6.45	1.85	0.67	4.2	1.61	5.28	3.54	5.0
Merged-chr5-64327394-1	chr5	64326894	64327894	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 14 of 18)	intron (NM_001289514, intron 14 of 18)	97037.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	20.02	23.96	22.2	18.89	23.79	25.72	3.17	8.84	11.87
Merged-chr4-151920510-1	chr4	151920010	151921010	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13210.0	NM_172704	230935.0	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	4.0	0.92	0.0	6.75	0.93	1.61	2.11	2.65	1.25
Merged-chr14-16219249-1	chr14	16218749	16219749	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5|LINE|L1	24082.0	NM_001359883	71147.0	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.57	1.84	1.85	0.0	4.67	3.22	2.11	3.1	2.5
Merged-chr3-87411379-1	chr3	87410879	87411879	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24403.0	NM_001113238	329693.0	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	3.43	4.15	0.92	1.35	1.87	4.82	1.06	2.65	1.87
Merged-chr9-111497271-1	chr9	111496771	111497771	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58190.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	5.15	2.3	0.0	4.72	0.93	0.0	3.17	0.88	0.0
Merged-chr4-59850373-1	chr4	59849873	59850873	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	44723.0	NM_172468	209131.0	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	14.3	16.59	11.1	13.49	9.33	6.43	4.22	2.65	6.87
Merged-chr1-82724406-1	chr1	82723906	82724906	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310699)	promoter-TSS (NM_001310699)	-484.0	NM_001310697	75734.0	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	58.92	70.5	17.57	53.3	40.59	29.74	43.3	49.52	28.73
Merged-chr2-5469360-1	chr2	5468860	5469860	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290375, intron 2 of 10)	intron (NM_001290375, intron 2 of 10)	89970.0	NR_030601	100124465.0		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	5.72	5.07	4.62	5.4	4.67	4.02	3.17	0.88	6.25
Merged-chr15-79339202-1	chr15	79338702	79339702	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7419.0	NM_001304830	17133.0	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	1.72	2.3	4.62	3.37	4.67	2.41	3.17	1.77	2.5
Merged-chr16-37579245-1	chr16	37578745	37579745	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013547)	promoter-TSS (NM_013547)	-908.0	NR_027778	15233.0	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	29.17	38.71	29.6	15.52	16.79	35.37	38.02	45.54	29.98
Merged-chr5-9012874-1	chr5	9012374	9013374	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Rod|LINE|L1	-15728.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	11.44	6.91	16.65	6.07	12.6	4.82	9.51	8.84	5.62
Merged-chr12-24741766-1	chr12	24741266	24742266	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	33512.0	NM_009104	20135.0	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.57	1.38	1.85	5.4	2.33	1.61	0.0	1.77	0.0
Merged-chr3-10260018-1	chr3	10259518	10260518	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357159, intron 1 of 4)	intron (NM_001357159, intron 1 of 4)	-5766.0	NM_001357160	75497.0	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	2.29	2.76	1.85	1.35	6.06	1.61	2.11	1.33	2.5
Merged-chr4-149586409-1	chr4	149585909	149586909	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290989)	promoter-TSS (NM_001290989)	-59.0	NM_001290989	65945.0	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	13.73	3.69	2.77	9.45	5.13	7.23	7.39	0.88	3.12
Merged-chr9-55589240-1	chr9	55588740	55589740	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357652, intron 28 of 32)	intron (NM_001357652, intron 28 of 32)	-32460.0	NM_001357653	244891.0	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	4.0	3.69	1.85	4.72	4.2	2.41	0.0	3.1	2.5
Merged-chr8-41371009-1	chr8	41370509	41371509	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019734, intron 1 of 13)	intron (NM_019734, intron 1 of 13)	3688.0	NM_019734	11886.0	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	14.3	14.28	22.2	22.94	9.33	14.47	44.36	41.56	28.1
Merged-chr1-184730846-2	chr1	184730343	184731343	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008250, exon 2 of 4)	exon (NM_008250, exon 2 of 4)	1650.0	NM_008250	15284.0	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	90.38	109.21	99.89	76.24	58.78	91.63	118.29	109.66	89.93
Merged-chr2-25626609-1	chr2	25626109	25627109	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007995, intron 5 of 9)	intron (NM_007995, intron 5 of 9)	1365.0	NM_007995	14133.0	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	40.04	30.41	52.72	47.23	33.12	95.65	84.49	43.77	18.11
Merged-chr19-21644129-1	chr19	21643629	21644629	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	8662.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	6.29	10.14	11.1	8.77	7.0	6.43	11.62	11.5	11.87
Merged-chr14-65026375-1	chr14	65025875	65026875	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153414, intron 10 of 16)	intron (NM_153414, intron 10 of 16)	71731.0	NM_018788	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	2.86	2.76	5.55	2.7	2.33	8.04	4.22	3.1	8.12
Merged-chr3-51184330-1	chr3	51183830	51184830	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-40117.0	NM_009834	12457.0	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	58.35	63.13	41.62	78.94	76.51	57.87	145.75	182.17	155.51
Merged-chr8-11094712-1	chr8	11094212	11095212	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86282.0	NM_001081212	384783.0	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	4.0	4.61	3.7	6.07	2.33	8.04	3.17	2.21	7.49
Merged-chr11-78983560-1	chr11	78983060	78984060	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010708, intron 1 of 10)	intron (NM_010708, intron 1 of 10)	1364.0	NM_001159301	16859.0	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	195.64	180.17	130.42	241.55	257.05	195.32	248.2	286.52	135.52
Merged-chr13-37779955-1	chr13	37779455	37780455	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46083.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	61.78	42.39	48.1	75.57	36.39	61.09	61.26	31.39	21.23
Merged-chr11-114205362-1	chr11	114204862	114205862	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7104.0	NR_045930	73536.0	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	1.14	1.84	7.4	2.02	4.2	1.61	6.34	0.44	0.0
Merged-chr5-19401210-1	chr5	19400710	19401710	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	174164.0	NM_001170746	50791.0	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	6.29	1.38	0.0	2.02	2.33	1.61	0.0	1.33	1.25
Merged-chr2-6674580-2	chr2	6674081	6675081	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	intron (NM_001110232, intron 4 of 15)	47081.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	6.29	6.91	6.47	8.1	5.13	5.63	3.17	2.65	3.12
Merged-chr2-27539882-1	chr2	27539382	27540382	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24735.0	NM_080848	140858.0	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	223.67	233.62	110.07	194.99	240.25	131.82	195.39	282.54	82.44
Merged-chr9-48580946-1	chr9	48580446	48581446	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D9|SINE|Alu	24177.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	4.58	1.84	1.85	8.1	3.27	0.0	8.45	13.27	15.61
Merged-chr15-66685317-1	chr15	66684817	66685817	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009375, exon 11 of 48)	exon (NM_009375, exon 11 of 48)	14547.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	20.02	16.59	13.87	12.82	6.06	12.86	13.73	12.82	18.11
Merged-chr1-74390147-1	chr1	74389647	74390647	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1462.0	NM_153088	227292.0	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	20.59	18.43	11.1	24.29	12.13	23.31	17.96	15.92	11.24
Merged-chr16-55525669-1	chr16	55525169	55526169	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30938.0	NR_039578	100628589.0		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	10.3	7.37	7.4	4.05	5.13	12.86	8.45	10.17	7.49
Merged-chr11-106723043-2	chr11	106722532	106723532	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7751.0	NM_001305157	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	14.87	11.52	18.5	17.54	10.26	16.08	17.96	14.15	19.98
Merged-chr13-74022330-1	chr13	74021830	74022830	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_182839, intron 2 of 3)	intron (NM_182839, intron 2 of 3)	12911.0	NM_182839	72948.0	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	15.45	14.75	17.57	12.14	8.86	1.61	12.67	13.71	6.25
Merged-chr6-142343851-1	chr6	142343351	142344351	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1846.0	NM_183165	232491.0	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	1.72	3.23	1.85	3.37	2.33	4.82	1.06	3.54	5.0
Merged-chr13-21160229-1	chr13	21159729	21160729	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17174.0	NM_146534	258527.0	Mm.271440	NM_146534	ENSMUSG00000045474	Olfr1368	MOR256-15	olfactory receptor 1368	protein-coding	12.01	4.15	7.4	8.77	9.33	4.82	11.62	9.73	4.37
Merged-chr2-180702593-1	chr2	180702093	180703093	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_175551)	promoter-TSS (NM_175551)	-491.0	NM_175551	23856.0	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	80.09	90.77	106.37	80.97	66.71	61.09	81.33	72.07	54.96
Merged-chr19-57198130-1	chr19	57197630	57198630	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290816)	promoter-TSS (NM_001290816)	-499.0	NM_001290816	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	4.0	0.92	5.55	4.05	3.27	2.41	4.22	3.98	5.0
Merged-chr7-31208928-1	chr7	31208428	31209428	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	46570.0	NR_046062	100038516.0	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322	predicted gene 10640	ncRNA	57.78	64.97	45.32	45.88	52.72	53.85	38.02	28.74	21.86
Merged-chr12-54927632-1	chr12	54927132	54928132	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013815, exon 12 of 27)	exon (NM_013815, exon 12 of 27)	58704.0	NM_013815	217578.0	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	10.87	15.21	14.8	7.42	11.2	16.08	8.45	11.5	8.74
Merged-chr2-170174671-1	chr2	170174171	170175171	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31996.0	NM_001159683	228913.0	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	25.17	29.95	34.22	41.16	27.06	32.15	28.52	33.6	39.35
Merged-chr9-59540696-1	chr9	59540196	59541196	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010421, intron 1 of 13)	intron (NM_010421, intron 1 of 13)	1156.0	NM_010421	15211.0	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	132.72	183.39	114.69	127.52	155.35	137.45	172.16	230.37	96.18
Merged-chr17-40794123-1	chr17	40793623	40794623	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009420)	promoter-TSS (NM_009420)	23.0	NM_001204071	22024.0	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	5.15	1.38	3.7	0.67	7.0	4.02	1.06	4.86	1.25
Merged-chr5-146303659-1	chr5	146303159	146304159	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001359990)	TTS (NM_001359990)	72409.0	NM_153599	264064.0	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	6.29	3.23	1.85	4.72	2.8	3.22	0.0	3.54	1.25
Merged-chr7-44304073-1	chr7	44303573	44304573	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009131, exon 4 of 4)	3' UTR (NM_009131, exon 4 of 4)	2886.0	NM_009131	20256.0	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	35.47	50.69	33.3	19.57	32.66	34.56	53.87	65.88	36.22
Merged-chr17-9764921-1	chr17	9764421	9765421	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045433, intron 3 of 3)	intron (NR_045433, intron 3 of 3)	10945.0	NR_045433	71092.0	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	4.58	2.76	1.85	4.72	4.67	0.0	4.22	1.77	2.5
Merged-chr5-103802706-1	chr5	103802206	103803206	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133919, intron 3 of 19)	intron (NM_133919, intron 3 of 19)	48133.0	NM_001080798	17355.0	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	1.14	8.29	2.77	3.37	5.13	8.84	4.22	2.65	8.74
Merged-chr2-77285120-1	chr2	77284620	77285620	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-4528.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	14.3	11.52	1.85	17.54	12.6	9.65	12.67	10.61	6.87
Merged-chr13-110567713-1	chr13	110567213	110568213	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	172669.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	45.76	38.71	21.27	33.74	30.79	24.92	48.58	39.35	33.1
Merged-chr3-88331441-1	chr3	88330941	88331941	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024246, intron 3 of 3)	intron (NM_024246, intron 3 of 3)	2992.0	NM_024246	71913.0	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	6.86	4.61	3.7	3.37	1.87	6.43	4.22	3.1	1.87
Merged-chrX-159628216-1	chrX	159627716	159628716	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135727, intron 1 of 17)	intron (NM_001135727, intron 1 of 17)	944.0	NM_001135727	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	56.63	47.46	57.35	63.42	66.24	58.68	71.82	73.84	34.97
Merged-chr7-64358102-1	chr7	64357602	64358602	+	582.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177893, intron 8 of 13)	intron (NM_177893, intron 8 of 13)	15993.0	NM_177893	330554.0	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	86.38	101.83	87.87	109.3	104.03	143.88	145.75	180.4	83.06
Merged-chr5-28094120-1	chr5	28093620	28094620	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22708.0	NM_153526	231070.0	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	1.72	2.76	0.0	2.7	2.33	1.61	3.17	1.33	6.25
Merged-chr18-60211326-1	chr18	60210826	60211826	+	582.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033767)	promoter-TSS (NM_001033767)	-751.0	NM_001033767	240327.0	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	104.11	117.04	137.82	90.41	71.84	133.43	174.27	189.25	118.04
Merged-chr11-98031576-1	chr11	98031076	98032076	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4652.0	NM_009078	19921.0	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	9.72	5.07	10.17	4.05	2.8	5.63	4.22	3.98	2.5
Merged-chr15-39078648-1	chr15	39078148	39079148	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026778, intron 1 of 3)	intron (NM_026778, intron 1 of 3)	1716.0	NM_026778	68588.0	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	3.43	1.84	7.4	6.07	3.73	0.0	2.11	0.0	3.75
Merged-chr18-62033639-1	chr18	62033139	62034139	+	582.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	80564.0	NM_172628	225608.0	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	19.45	24.42	9.25	26.31	20.99	19.29	5.28	4.42	5.62
Merged-chr6-124507582-2	chr6	124507085	124508085	+	581.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181344, intron 5 of 5)	L1MB7|LINE|L1	-5036.0	NM_023143	50909.0	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	16.59	6.45	26.82	10.8	10.73	8.04	19.01	9.73	14.99
Merged-chr5-140540296-2	chr5	140539796	140540796	+	581.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24771.0	NM_030022	77998.0	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.57	3.23	0.0	2.7	0.93	0.0	2.11	2.65	3.75
Merged-chr9-108068070-2	chr9	108067567	108068567	+	581.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001311152, intron 15 of 38)	intron (NM_001311152, intron 15 of 38)	11234.0	NM_001311152	84585.0	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	3.43	1.84	0.92	6.75	1.87	0.8	2.11	0.44	0.0
Merged-chr16-91741072-1	chr16	91740572	91741572	+	581.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	11701.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	45.76	49.76	17.57	43.18	36.39	44.21	50.7	26.53	30.6
Merged-chr9-46192834-3	chr9	46192339	46193339	+	581.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 6 of 24)	intron (NM_027498, intron 6 of 24)	-35791.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	25.74	24.88	8.32	22.27	25.19	21.7	21.12	25.65	30.6
Merged-chr2-75936806-1	chr2	75936306	75937306	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_028235, exon 1 of 1)	exon (NM_028235, exon 1 of 1)	1656.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	16.02	17.51	6.47	4.05	13.53	13.66	9.51	5.31	19.98
Merged-chr18-39185860-1	chr18	39185360	39186360	+	581.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	intron (NM_001361073, intron 11 of 21)	192715.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	2.86	2.76	1.85	2.7	3.27	4.02	5.28	5.31	6.25
Merged-chr6-38337404-1	chr6	38336904	38337904	+	581.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 2 of 8)	B2_Mm2|SINE|B2	17199.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	19.45	29.03	22.2	20.92	14.93	9.65	28.52	30.51	19.36
Merged-chr2-167717844-1	chr2	167717344	167718344	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26667.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	53.77	50.23	38.85	109.98	77.44	45.82	63.37	58.37	22.48
Merged-chr15-73791983-2	chr15	73791489	73792489	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033365, intron 5 of 10)	intron (NM_001033365, intron 5 of 10)	17944.0	NM_001362047	100041273.0	Mm.379154	NM_001362047		Gm3244	-	predicted pseudogene 3244	protein-coding	1.72	1.84	0.0	2.7	1.87	0.0	1.06	1.77	5.0
Merged-chr8-124912625-1	chr8	124912125	124913125	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053207, intron 3 of 4)	intron (NM_053207, intron 3 of 4)	14739.0	NM_001111141	244666.0	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	14.3	18.43	14.8	35.09	26.59	16.88	13.73	1.77	7.49
Merged-chr4-49518608-2	chr4	49518103	49519103	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178603, intron 1 of 1)	MTD|LTR|ERVL-MaLR	2480.0	NM_178603	28028.0	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	14.87	6.45	0.92	5.4	4.2	16.08	20.07	7.07	13.12
Merged-chr4-86668296-2	chr4	86667816	86668816	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007408, intron 3 of 7)	intron (NM_007408, intron 3 of 7)	1743.0	NM_007408	11520.0	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	70.36	56.22	33.3	79.62	81.17	65.11	50.7	40.68	26.23
Merged-chr1-59883985-2	chr1	59883489	59884489	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29017.0	NM_001037725	72750.0	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	2.86	3.69	1.85	4.05	0.47	1.61	3.17	0.0	1.25
Merged-chr10-8887445-1	chr10	8886945	8887945	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1375.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	54.92	43.77	21.27	74.89	56.45	51.44	36.97	34.49	18.11
Merged-chr15-59046932-1	chr15	59046432	59047432	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	35094.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	6.29	7.37	2.77	8.1	5.13	3.22	8.45	6.63	4.37
Merged-chr16-10978530-1	chr16	10978030	10979030	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	14591.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	44.05	63.13	47.17	35.76	37.32	63.5	64.43	46.43	43.72
Merged-chr9-63043629-1	chr9	63043129	63044129	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62750.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	16.02	9.22	3.7	12.14	8.86	9.65	12.67	19.9	12.49
Merged-chr6-72940675-1	chr6	72940175	72941175	+	581.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17557.0	NM_001039392	19240.0	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	6.86	5.99	4.62	1.35	4.2	3.22	9.51	1.77	3.75
Merged-chr3-89299458-2	chr3	89298983	89299983	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-18532.0	NM_001162425	13636.0	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	8.58	6.91	12.95	8.77	6.06	4.02	8.45	2.21	6.25
Merged-chr14-18731202-2	chr14	18730699	18731699	+	581.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360327, intron 3 of 5)	intron (NM_001360327, intron 3 of 5)	162214.0	NM_001360328	218793.0	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	4.0	20.74	5.55	6.75	7.93	7.23	2.11	4.42	6.25
Merged-chr1-105092824-2	chr1	105092320	105093320	+	581.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-263187.0	NR_151539	100504568.0	Mm.321153	NR_151538	ENSMUSG00000097482	Gm17634	-	predicted gene, 17634	ncRNA	5.72	3.69	7.4	2.02	1.87	2.41	2.11	5.31	9.99
Merged-chr10-59910495-1	chr10	59909995	59910995	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	30904.0	NM_019965	56709.0	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.58	2.3	1.85	2.02	4.2	1.61	5.28	1.77	2.5
Merged-chr7-35234417-1	chr7	35233917	35234917	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19072.0	NM_001024707	435965.0	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	25.17	26.73	15.72	22.27	15.86	11.25	34.85	18.13	36.22
Merged-chr17-35999533-1	chr17	35999033	36000033	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	5029.0	NR_015618	77810.0	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	5.72	2.76	4.62	14.17	5.13	6.43	9.51	7.96	5.0
Merged-chr6-124280180-1	chr6	124279680	124280680	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24471.0	NM_001170395	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	36.04	50.23	59.2	53.98	37.32	57.87	50.7	61.9	52.46
Merged-chr3-15999741-2	chr3	15999246	16000246	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081687, intron 1 of 3)	RLTR45|LTR|ERVK	6586.0	NM_001081687	381484.0	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	9.72	4.61	12.95	8.77	4.2	4.02	3.17	4.42	6.87
Merged-chr12-113128893-1	chr12	113128393	113129393	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346696, intron 10 of 19)	intron (NM_001346696, intron 10 of 19)	-11343.0	NM_024223	68337.0	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	19.45	18.43	14.8	16.87	16.33	24.92	27.46	20.34	18.11
Merged-chr17-31118228-1	chr17	31117728	31118728	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009593)	TTS (NM_009593)	11383.0	NM_011575	21786.0	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	4.58	0.46	1.85	0.67	2.8	9.65	1.06	3.54	7.49
Merged-chr4-105706266-1	chr4	105705766	105706766	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-534947.0	NR_151521	105244641.0	Mm.404914	NR_151521		Gm12724	-	predicted gene 12724	ncRNA	5.72	8.29	1.85	10.8	9.8	20.9	3.17	9.73	5.0
Merged-chr7-15989100-1	chr7	15988600	15989600	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081418, exon 5 of 14)	exon (NM_001081418, exon 5 of 14)	10395.0	NM_001081418	243842.0	Mm.440249	NM_001081418	ENSMUSG00000070808	Bicra	Gltscr1	BRD4 interacting chromatin remodeling complex associated protein	protein-coding	1.72	2.3	5.55	2.7	0.93	4.82	2.11	0.0	1.87
Merged-chr5-75155870-2	chr5	75155377	75156377	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001083316)	promoter-TSS (NM_001083316)	-289.0	NM_001083316	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	3.43	1.38	3.7	8.1	0.93	1.61	1.06	1.33	2.5
Merged-chr7-130773341-1	chr7	130772841	130773841	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001081038)	promoter-TSS (NM_001081038)	-728.0	NM_001081038	330660.0	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	2.86	1.84	0.0	4.72	2.33	1.61	8.45	1.33	2.5
Merged-chr8-115597737-1	chr8	115597237	115598237	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	109157.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	32.61	30.41	37.0	43.18	35.92	44.21	27.46	24.32	22.48
Merged-chr19-37702895-1	chr19	37702395	37703395	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5087.0	NM_007811	13082.0	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	8.01	4.61	0.0	1.35	5.13	3.22	4.22	1.77	1.25
Merged-chr15-51673662-1	chr15	51673162	51674162	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	191799.0	NM_080635	68135.0	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	8.01	2.76	3.7	4.72	4.2	3.22	3.17	1.77	3.75
Merged-chr8-46242106-1	chr8	46241606	46242606	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31044.0	NM_007450	11739.0	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1|mANC1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	1.14	1.84	0.0	0.0	0.47	0.0	4.22	0.88	1.87
Merged-chr10-20395992-1	chr10	20395492	20396492	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48173.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	8.58	2.76	1.85	5.4	4.2	8.84	2.11	5.31	1.87
Merged-chr12-85129823-1	chr12	85129323	85130323	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030225, exon 12 of 15)	exon (NM_030225, exon 12 of 15)	18990.0	NM_030225	78920.0	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	5.72	5.07	2.77	6.75	6.06	7.23	7.39	4.42	1.25
Merged-chrX-142716227-1	chrX	142715727	142716727	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152447, intron 2 of 8)	L1M5|LINE|L1	-22773.0	NR_030523	723976.0		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	5.15	2.76	4.62	8.1	4.67	9.65	4.22	5.75	1.87
Merged-chr17-8936818-1	chr17	8936318	8937318	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347321, intron 5 of 21)	intron (NM_001347321, intron 5 of 21)	-51515.0	NM_025851	66931.0	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	4.0	5.53	3.7	6.07	0.93	1.61	2.11	0.44	1.25
Merged-chr17-33717598-1	chr17	33717098	33718098	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252480, intron 1 of 4)	MIRb|SINE|MIR	1079.0	NM_145486	224703.0	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	9.72	4.15	7.4	10.8	5.6	6.43	20.07	7.52	14.36
Merged-chr5-43771705-1	chr5	43771205	43772205	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178729, intron 2 of 8)	ORR1D2|LTR|ERVL-MaLR	10444.0	NM_001159963	242960.0	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	12.59	15.67	11.1	9.45	12.6	9.65	19.01	11.05	9.37
Merged-chr3-89448985-1	chr3	89448485	89449485	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_146131, exon 11 of 11)	3' UTR (NM_146131, exon 11 of 11)	-5556.0	NM_001310640	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.29	4.15	6.47	6.07	1.4	1.61	1.06	0.0	6.25
Merged-chr6-28460731-2	chr6	28460243	28461243	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11403.0	NM_001159925	18506.0	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	6.29	1.38	1.85	2.7	4.2	3.22	3.17	0.0	1.25
Merged-chr11-51565273-1	chr11	51564773	51565773	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153393, intron 15 of 28)	intron (NM_153393, intron 15 of 28)	-19484.0	NM_028398	72947.0	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	2.29	2.3	3.7	1.35	1.87	0.0	3.17	0.88	0.0
Merged-chr1-131283177-1	chr1	131282677	131283677	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3614.0	NM_019777	56489.0	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-E|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	4.58	5.99	0.0	2.7	3.73	5.63	7.39	1.77	2.5
Merged-chr12-112799777-1	chr12	112799277	112800277	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9198.0	NM_145450	217887.0	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Clba1|Flj20080	cDNA sequence BC022687	protein-coding	1.14	3.69	3.7	4.05	2.8	0.8	2.11	2.65	0.0
Merged-chr8-25615967-1	chr8	25615467	25616467	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001735, intron 1 of 9)	B3|SINE|B2	13683.0	NM_001308482	234135.0	Mm.217337	NM_001001735	ENSMUSG00000054823	Nsd3	6720429E03|A530023P05|AI528490|WHISTLE|Whsc1l1	nuclear receptor binding SET domain protein 3	protein-coding	16.02	13.82	27.75	12.82	6.53	20.09	8.45	4.86	3.75
Merged-chr15-27326016-1	chr15	27325516	27326516	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-140661.0	NM_020332	11732.0	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	3.43	1.84	3.7	2.02	1.87	0.0	0.0	3.54	5.0
Merged-chr17-45767857-1	chr17	45767357	45768357	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 2 of 4)	intron (NR_152153, intron 2 of 4)	33351.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	16.59	8.29	10.17	26.31	10.73	15.27	23.24	7.07	6.25
Merged-chr7-80199160-1	chr7	80198660	80199660	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360135, intron 1 of 13)	intron (NM_001360135, intron 1 of 13)	719.0	NM_001360135	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	76.08	71.88	91.57	99.18	108.7	89.22	130.97	129.11	44.34
Merged-chr4-3799349-1	chr4	3798849	3799849	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	36306.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.58	11.06	15.72	10.12	6.53	8.04	9.51	5.75	22.48
Merged-chr4-45587440-1	chr4	45586940	45587940	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52496.0	NR_151513	100040557.0	Mm.383510	NR_151513	ENSMUSG00000085980	Gm12408	-	predicted gene 12408	ncRNA	8.58	5.53	0.0	6.75	2.8	4.82	7.39	3.1	5.62
Merged-chr17-26489604-1	chr17	26489104	26490104	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18868.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	2.86	1.84	3.7	3.37	1.4	1.61	1.06	0.44	0.62
Merged-chr10-56754846-1	chr10	56754346	56755346	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	322865.0	NR_152768	102640560.0	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	9.15	4.61	1.85	7.42	3.27	14.47	10.56	4.42	1.25
Merged-chr14-103840696-1	chr14	103840196	103841196	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276296, intron 1 of 7)	intron (NM_001276296, intron 1 of 7)	3005.0	NM_007904	13618.0	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	1.72	2.76	0.0	6.07	2.8	4.02	2.11	0.44	2.5
Merged-chr7-35122432-1	chr7	35121932	35122932	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001287523)	TTS (NM_001287523)	3139.0	NM_007678	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	30.32	24.42	16.65	34.41	20.06	24.11	15.84	11.94	16.86
Merged-chr12-117487638-1	chr12	117487138	117488138	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28841.0	NM_175930	217944.0	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	5.72	6.91	7.4	4.72	1.87	2.41	3.17	7.96	12.49
Merged-chr1-132388890-1	chr1	132388390	132389390	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	1428.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	25.17	49.3	67.52	42.51	22.39	55.46	32.74	25.65	28.1
Merged-chr5-76954684-1	chr5	76954184	76955184	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356974, intron 1 of 8)	RMER6A|LTR|ERVK	-3106.0	NM_172146	231327.0	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	6.86	8.29	12.02	6.07	5.6	13.66	9.51	8.84	6.87
Merged-chr9-72082620-1	chr9	72082120	72083120	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011544, intron 3 of 20)	intron (NM_011544, intron 3 of 20)	28581.0	NM_001253862	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	10.3	3.69	0.92	4.05	2.33	4.82	7.39	2.65	7.49
Merged-chr12-112113886-1	chr12	112113386	112114386	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081169, intron 3 of 14)	intron (NM_001081169, intron 3 of 14)	-4577.0	NR_049197	100885836.0		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA	1.14	0.92	3.7	1.35	2.8	3.22	0.0	2.65	6.25
Merged-chr17-10856895-1	chr17	10856395	10857395	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001317726, intron 1 of 6)	intron (NM_001317726, intron 1 of 6)	16536.0	NM_016694	50873.0	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	16.02	17.05	9.25	27.66	14.0	17.68	20.07	18.57	19.98
Merged-chr1-132416508-1	chr1	132416008	132417008	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-945.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	15.45	23.5	30.52	21.59	19.13	38.58	26.4	17.69	19.36
Merged-chr3-107330702-1	chr3	107330202	107331202	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001045807, exon 1 of 2)	exon (NM_001045807, exon 1 of 2)	2587.0	NM_001045807	229700.0	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	21.17	10.14	24.97	9.45	10.73	13.66	12.67	17.24	16.24
Merged-chr1-74239880-1	chr1	74239380	74240380	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357387, intron 2 of 10)	intron (NM_001357387, intron 2 of 10)	3363.0	NM_029711	76709.0	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	60.64	85.25	75.85	53.98	51.32	71.54	64.43	76.05	53.08
Merged-chr2-93199688-2	chr2	93199193	93200193	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025246, intron 7 of 7)	intron (NM_001025246, intron 7 of 7)	12145.0	NM_001025246	277414.0	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	5.15	1.84	7.4	2.7	0.93	1.61	4.22	0.0	0.62
Merged-chr19-28678717-1	chr19	28678217	28679217	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045330, intron 1 of 4)	intron (NR_045330, intron 1 of 4)	493.0	NR_045330	320176.0	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	5.72	5.53	7.4	20.92	14.46	18.49	4.22	3.54	6.25
Merged-chr15-23591016-1	chr15	23590516	23591516	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	554553.0	NM_001081299	320865.0	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.0	1.38	5.55	4.05	0.93	0.0	3.17	2.65	4.37
Merged-chrX-93929943-2	chrX	93929432	93930432	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-38724.0	NR_028320	385493.0	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	5.72	3.69	2.77	3.37	3.27	4.02	2.11	0.0	1.25
Merged-chrX-160794489-1	chrX	160793989	160794989	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011302, intron 5 of 5)	intron (NM_011302, intron 5 of 5)	26476.0	NM_011302	20147.0	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	1.72	2.76	1.85	3.37	0.0	3.22	5.28	1.77	0.0
Merged-chr9-82977158-1	chr9	82976658	82977658	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1669.0	NM_001081216	83946.0	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	30.89	23.5	21.27	27.66	31.26	20.9	27.46	44.22	34.35
Merged-chr15-13469388-1	chr15	13468888	13469888	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-295713.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	2.86	2.76	5.55	2.7	0.93	1.61	4.22	3.1	1.25
Merged-chr7-46825206-1	chr7	46824706	46825706	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20598.0	NM_010699	16828.0	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	3.43	5.07	20.35	2.7	3.27	0.0	5.28	4.42	5.0
Merged-chrX-48020089-1	chrX	48019589	48020589	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14764.0	NM_013912	30878.0	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.57	3.69	1.85	0.67	0.93	4.82	3.17	5.75	0.0
Merged-chr3-151742452-1	chr3	151741952	151742952	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133871, intron 5 of 7)	RMER20B|LTR|ERVK	7507.0	NM_133871	99899.0	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	1.72	3.23	3.7	1.35	2.33	1.61	3.17	3.1	3.75
Merged-chr2-59019195-1	chr2	59018695	59019695	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	141488.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.0	2.76	9.25	3.37	4.2	2.41	1.06	1.33	5.0
Merged-chr3-89337768-1	chr3	89337268	89338268	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007910, intron 1 of 3)	CpG	260.0	NM_007910	13639.0	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	2.86	3.23	1.85	6.75	3.73	1.61	4.22	0.0	2.5
Merged-chr12-111454308-2	chr12	111453799	111454799	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_009396, exon 12 of 12)	3' UTR (NM_009396, exon 12 of 12)	11638.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	12.59	18.43	26.82	6.07	10.73	18.49	17.96	17.69	18.74
Merged-chr2-93421575-1	chr2	93421075	93422075	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NR_105967)	TTS (NR_105967)	432.0	NR_105967	102465605.0		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	3.43	1.84	9.25	1.35	3.27	4.82	1.06	0.44	0.0
Merged-chr19-4059954-1	chr19	4059454	4060454	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001362043)	promoter-TSS (NM_001362043)	-507.0	NM_001362043	225884.0	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	39.47	43.77	46.25	37.78	29.39	64.3	29.57	27.86	38.1
Merged-chr6-39084400-1	chr6	39083900	39084900	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011539, exon 13 of 13)	3' UTR (NM_011539, exon 13 of 13)	-16814.0	NR_040523	69986.0	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	5.72	7.83	20.35	6.07	9.33	15.27	8.45	5.75	5.0
Merged-chr8-123411525-1	chr8	123411025	123412025	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_023279)	promoter-TSS (NM_023279)	-39.0	NM_023279	22152.0	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	4.58	0.92	0.0	3.37	0.93	0.0	5.28	0.88	0.0
Merged-chr11-51815482-1	chr11	51814982	51815982	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199299, exon 12 of 12)	3' UTR (NM_199299, exon 12 of 12)	41999.0	NM_199299	76901.0	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	12.59	6.91	13.87	8.1	5.6	9.65	7.39	6.19	7.49
Merged-chr12-44199423-1	chr12	44198923	44199923	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	10645.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	2.86	1.84	12.95	0.0	3.27	4.82	2.11	1.33	1.25
Merged-chr9-26962408-1	chr9	26961908	26962908	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37141.0	NM_025862	66948.0	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	10.87	19.81	12.95	22.94	20.06	12.06	3.17	10.61	10.62
Merged-chr14-51156856-1	chr14	51156356	51157356	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5404.0	NM_019398	54159.0	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	8.01	8.75	12.02	12.82	8.86	9.65	16.9	7.52	6.25
Merged-chr1-131528968-1	chr1	131528468	131529468	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175382, intron 1 of 3)	intron (NM_175382, intron 1 of 3)	1065.0	NM_175382	108900.0	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	24.03	15.21	19.42	27.66	16.33	17.68	19.01	19.46	9.99
Merged-chr4-116336481-1	chr4	116335981	116336981	+	581.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042743, intron 6 of 29)	RLTR12B|LTR|ERVK	113734.0	NM_001355586	18710.0	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	10.87	1.84	2.77	2.02	7.0	3.22	3.17	3.1	11.24
Merged-chr15-98869640-1	chr15	98869140	98870140	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033276, intron 1 of 54)	intron (NM_001033276, intron 1 of 54)	1565.0	NM_001033276	381022.0	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	22.31	19.35	23.12	16.19	16.79	30.54	15.84	20.34	33.1
Merged-chr8-83596604-1	chr8	83596104	83597104	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	-2113.0	NM_134118	106529.0	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	4.58	4.15	11.1	3.37	0.93	12.86	10.56	7.07	5.0
Merged-chr2-147083681-2	chr2	147083196	147084196	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_023504)	TTS (NM_023504)	1649.0	NM_023504	228731.0	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.57	0.92	9.25	2.7	0.0	1.61	2.11	3.54	3.75
Merged-chr2-45754401-1	chr2	45753901	45754901	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57796.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	4.58	3.23	3.7	4.72	5.13	2.41	4.22	6.63	5.0
Merged-chr17-8224916-1	chr17	8224416	8225416	+	581.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-11127.0	NM_001190333	12458.0	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	21.74	32.72	17.57	15.52	12.6	28.94	8.45	6.19	8.74
Merged-chr4-129696045-1	chr4	129695545	129696545	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356378, intron 1 of 9)	intron (NM_001356378, intron 1 of 9)	800.0	NM_199305	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	21.17	11.06	31.45	17.54	6.53	12.06	22.18	12.38	24.98
Merged-chr9-99496019-1	chr9	99495519	99496519	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	intron (NM_028768, intron 18 of 21)	25598.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	22.31	24.88	33.3	17.54	37.79	30.54	30.63	27.41	15.61
Merged-chr19-4203052-1	chr19	4202552	4203552	+	581.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1449.0	NM_011237	19367.0	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	37.18	42.39	64.75	28.34	31.72	45.82	30.63	38.03	26.85
Merged-chr2-118902542-3	chr2	118902085	118903085	+	580.555542	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045523, intron 1 of 6)	CpG	970.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	9.72	4.61	5.55	11.47	5.13	4.82	8.45	3.54	6.25
Merged-chr7-30205588-1	chr7	30205088	30206088	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ETnERV-int|LTR|ERVK	-10435.0	NM_009795	12336.0	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|Cdps|Css1|D7Ertd146e	calpain, small subunit 1	protein-coding	2.86	2.3	0.0	0.67	1.87	3.22	3.17	0.0	0.0
Merged-chr6-136858444-1	chr6	136857944	136858944	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026639)	promoter-TSS (NM_026639)	-844.0	NM_026639	109978.0	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	22.88	23.5	22.2	10.8	10.26	8.04	1.06	0.88	4.37
Merged-chr8-116946035-1	chr8	116945535	116946535	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177700, intron 1 of 3)	intron (NM_177700, intron 1 of 3)	2642.0	NM_177700	234776.0	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	69.79	98.61	114.69	82.99	80.24	97.26	77.1	87.55	65.58
Merged-chr10-79926485-3	chr10	79925931	79926931	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007880)	promoter-TSS (NM_007880)	-612.0	NM_001288626	13496.0	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	43.48	35.48	47.17	37.11	32.66	41.8	38.02	55.71	34.35
Merged-chr11-58640591-1	chr11	58640091	58641091	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001039047, exon 1 of 6)	exon (NM_001039047, exon 1 of 6)	126.0	NM_001039047	216781.0	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	1.14	2.76	2.77	4.72	0.47	3.22	3.17	0.0	0.0
Merged-chr1-23237912-2	chr1	23237408	23238408	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34361.0	NR_029533	387225.0		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	4.58	4.15	11.1	3.37	3.27	1.61	4.22	3.98	7.49
Merged-chr11-17003827-1	chr11	17003327	17004327	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019549, intron 1 of 9)	MIR|SINE|MIR	4891.0	NM_019549	56193.0	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	208.8	206.43	162.79	201.07	150.68	196.93	145.75	189.25	129.28
Merged-chr5-25089759-1	chr5	25089259	25090259	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 1 of 15)	intron (NM_145401, intron 1 of 15)	10883.0	NM_145401	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	2.29	0.92	0.92	2.7	2.33	4.82	1.06	2.65	0.0
Merged-chr3-79883349-1	chr3	79882849	79883849	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2581.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	1.14	2.3	7.4	6.75	5.6	0.0	4.22	0.44	1.25
Merged-chr19-7580831-1	chr19	7580331	7581331	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362425, intron 4 of 4)	intron (NM_001362425, intron 4 of 4)	23346.0	NM_001362425	225845.0	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	AdPLA|C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	29.75	44.7	44.4	30.36	22.86	62.7	36.97	27.41	40.59
Merged-chr16-33658905-2	chr16	33658359	33659359	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083902, intron 11 of 11)	(TC)n|Simple_repeat|Simple_repeat	-25607.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	11.44	8.75	7.4	4.05	4.67	6.43	6.34	3.1	7.49
Merged-chr2-91347889-1	chr2	91347389	91348389	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 3 of 8)	intron (NM_175123, intron 3 of 8)	82774.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	14.87	11.98	15.72	8.77	15.86	11.25	12.67	8.4	12.49
Merged-chr9-44637837-1	chr9	44637337	44638337	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_181324, exon 14 of 14)	3' UTR (NM_181324, exon 14 of 14)	32945.0	NM_181324	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	9.15	5.53	1.85	8.77	1.4	7.23	3.17	6.63	3.12
Merged-chr4-99484371-2	chr4	99483866	99484866	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-171933.0	NM_010425	15221.0	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	2.29	3.23	1.85	2.7	4.2	1.61	5.28	3.1	6.25
Merged-chr13-46737608-1	chr13	46737108	46738108	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-9759.0	NM_175749	218210.0	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	18.88	12.9	12.95	18.89	14.93	23.31	16.9	11.94	11.24
Merged-chr5-100536864-2	chr5	100536362	100537362	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359204, intron 7 of 10)	intron (NM_001359204, intron 7 of 10)	18553.0	NM_001359204	26891.0	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e|SGN4	COP9 signalosome subunit 4	protein-coding	6.29	6.91	6.47	2.7	4.2	1.61	4.22	5.31	7.49
Merged-chr2-121139473-1	chr2	121138973	121139973	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290812)	promoter-TSS (NM_001290812)	-955.0	NM_001355748	75894.0	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	23.45	24.88	20.35	24.29	43.39	34.56	60.2	71.19	40.59
Merged-chr11-70944764-2	chr11	70944259	70945259	+	580.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083331, intron 12 of 16)	intron (NM_001083331, intron 12 of 16)	25214.0	NM_172394	19069.0	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	62.35	61.28	51.8	39.81	27.06	32.15	61.26	74.28	32.48
Merged-chr7-98779113-2	chr7	98778614	98779614	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-55998.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.72	3.23	0.0	7.42	3.73	0.0	1.06	0.0	1.87
Merged-chr16-32010561-1	chr16	32010061	32011061	+	580.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7274.0	NM_177103	320213.0	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	8.01	5.99	7.4	9.45	5.6	12.06	5.28	3.98	5.62
Merged-chr4-3773795-1	chr4	3773295	3774295	+	580.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111096, intron 10 of 12)	B1_Mus1|SINE|Alu	58831.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	12.59	6.91	4.62	18.89	7.0	15.27	14.79	14.59	18.11
Merged-chr5-124482820-3	chr5	124482309	124483309	+	580.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_029532)	promoter-TSS (NM_029532)	-346.0	NM_029532	76167.0	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	298.04	296.75	199.79	272.59	253.78	221.04	292.56	365.67	174.87
Merged-chr16-18108416-3	chr16	18107905	18108905	+	580.361084	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19215.0	NM_011172	19125.0	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	8.01	0.92	1.85	0.0	1.87	0.0	2.11	0.44	1.25
Merged-chr5-105354200-1	chr5	105353700	105354700	+	580.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7724.0	NR_132129	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	8.01	20.27	16.65	7.42	10.73	2.41	14.79	11.94	9.99
Merged-chr13-8785440-1	chr13	8784940	8785940	+	580.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	85604.0	NM_001039389	207615.0	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	1.72	2.76	1.85	0.67	0.0	0.0	0.0	1.77	2.5
Merged-chr2-25263194-1	chr2	25262694	25263694	+	580.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175286, exon 1 of 4)	exon (NM_175286, exon 1 of 4)	596.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	41.19	23.04	30.52	26.31	16.79	16.88	20.07	26.97	14.99
Merged-chr7-19932849-1	chr7	19932349	19933349	+	580.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11706.0	NM_027514	52118.0	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	15.45	12.9	20.35	18.22	7.46	32.96	15.84	9.29	9.37
Merged-chr2-145810857-2	chr2	145810350	145811350	+	580.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028724, intron 2 of 12)	B3|SINE|B2	24734.0	NM_028724	74030.0	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	24.6	5.99	13.87	14.84	7.0	24.11	5.28	8.84	9.99
Merged-chr13-76689555-2	chr13	76689052	76690052	+	580.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030174, intron 3 of 20)	B4A|SINE|B4	304591.0	NM_030174	78771.0	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	12.01	10.14	12.95	10.8	11.2	1.61	6.34	9.73	3.75
Merged-chr15-80266491-2	chr15	80265996	80266996	+	580.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2190.0	NM_175109	66538.0	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	5.72	5.07	0.0	6.75	0.47	2.41	3.17	0.44	1.25
Merged-chr5-92603520-2	chr5	92603040	92604040	+	580.166626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175096, intron 1 of 1)	CpG	489.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	8.01	3.23	4.62	5.4	5.6	0.0	4.22	1.33	8.74
Merged-chr7-109026221-1	chr7	109025721	109026721	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021885, intron 6 of 11)	intron (NM_021885, intron 6 of 11)	15341.0	NM_021885	22141.0	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby bipartite transcription factor	protein-coding	5.72	1.38	12.02	10.12	2.8	6.43	1.06	1.77	2.5
Merged-chr14-31380007-1	chr14	31379507	31380507	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347585, intron 3 of 7)	intron (NM_001347585, intron 3 of 7)	37670.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	85.81	87.55	89.72	91.09	60.18	69.13	99.28	159.18	76.19
Merged-chr2-113491670-1	chr2	113491170	113492170	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285459, intron 3 of 16)	CT-rich|Low_complexity|Low_complexity	50606.0	NM_001285459	14260.0	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	18.88	8.75	16.65	10.8	11.2	6.43	6.34	3.1	3.12
Merged-chr5-104074524-1	chr5	104074024	104075024	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3084.0	NM_001163772	100271704.0	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	4.58	1.84	1.85	2.7	1.87	4.82	1.06	2.21	3.75
Merged-chr1-135811497-1	chr1	135810997	135811997	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001112702)	TTS (NM_001112702)	-7101.0	NM_133664	16763.0	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	LADA|lad-1	ladinin	protein-coding	5.15	3.69	7.4	2.02	2.33	0.8	1.06	0.88	1.25
Merged-chr15-99098365-1	chr15	99097865	99098865	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1119.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	4.0	2.3	1.85	2.7	1.4	3.22	1.06	0.88	2.5
Merged-chrX-7693038-1	chrX	7692538	7693538	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4096.0	NM_173747	209416.0	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	0.0	1.38	0.0	2.7	1.4	6.43	2.11	0.88	0.0
Merged-chr14-21048067-1	chr14	21047567	21048567	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018829, intron 1 of 8)	PB1|SINE|Alu	4375.0	NM_018829	55946.0	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	10.3	5.53	3.7	10.12	7.93	19.29	9.51	8.4	7.49
Merged-chr3-88406436-1	chr3	88405936	88406936	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	3961.0	NM_001310605	67037.0	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	40.04	39.63	59.2	23.62	19.59	32.15	55.98	50.85	29.35
Merged-chr7-49246698-2	chr7	49246225	49247225	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_175272, exon 1 of 38)	5' UTR (NM_175272, exon 1 of 38)	536.0	NM_175272	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	3.43	4.61	5.55	10.8	3.73	4.82	5.28	1.33	6.25
Merged-chr1-36309222-1	chr1	36308722	36309722	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1489.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	18.31	6.91	7.4	28.34	20.99	19.29	16.9	6.63	11.24
Merged-chr16-94549954-1	chr16	94549454	94550454	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20252.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.58	5.07	1.85	2.02	3.27	9.65	7.39	3.1	2.5
Merged-chr16-58462073-2	chr16	58461569	58462569	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356484, intron 13 of 15)	B2_Mm2|SINE|B2	53534.0	NM_028523	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	4.58	1.84	1.85	2.7	2.33	0.8	2.11	1.77	1.25
Merged-chr10-20827680-1	chr10	20827180	20828180	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-102602.0	NM_013875	29863.0	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	5.15	4.15	7.4	10.12	5.13	5.63	4.22	5.31	5.0
Merged-chr8-108778334-1	chr8	108777834	108778834	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	63690.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	4.58	3.69	19.42	12.82	8.86	10.45	1.06	1.33	1.87
Merged-chr4-117188867-1	chr4	117188367	117189367	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6243.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	30.89	27.65	15.72	23.62	13.06	36.17	23.24	23.43	18.74
Merged-chr15-99024876-1	chr15	99024376	99025376	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5015.0	NM_009448	22146.0	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	4.58	7.83	7.4	4.05	4.67	0.0	5.28	7.52	5.0
Merged-chr8-126721807-1	chr8	126721307	126722307	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-127213.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	6.29	5.07	3.7	7.42	4.67	0.0	3.17	2.21	2.5
Merged-chr7-144469395-1	chr7	144468895	144469895	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357116, intron 1 of 15)	intron (NM_001357116, intron 1 of 15)	1540.0	NM_007803	13043.0	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	5.15	7.83	18.5	3.37	4.67	8.04	7.39	4.42	13.12
Merged-chr13-83524784-1	chr13	83524284	83525284	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347568)	promoter-TSS (NM_001347568)	41.0	NM_001347580	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	7.44	2.76	2.77	18.89	8.86	11.25	2.11	5.31	5.0
Merged-chr5-124095410-1	chr5	124094910	124095910	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019875, intron 1 of 11)	intron (NM_019875, intron 1 of 11)	388.0	NM_019875	56325.0	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	13.73	4.15	22.2	12.14	16.33	16.08	8.45	6.63	1.25
Merged-chr6-122934546-1	chr6	122934046	122935046	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_199311)	TTS (NM_199311)	12698.0	NM_199311	269799.0	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	61.78	88.01	33.3	62.75	36.85	69.93	107.73	90.2	54.33
Merged-chr5-52435675-1	chr5	52435175	52436175	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001256059, intron 3 of 11)	intron (NM_001256059, intron 3 of 11)	-5484.0	NR_152197	100041805.0	Mm.417070	NR_152197		Gm3519	Gm43683	predicted gene 3519	ncRNA	3.43	3.69	5.55	5.4	0.47	0.0	2.11	1.77	5.0
Merged-chr7-122033545-1	chr7	122033045	122034045	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026140)	TTS (NM_026140)	-12347.0	NM_028758	74105.0	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	5.15	2.76	5.55	5.4	1.87	4.82	3.17	2.65	2.5
Merged-chr14-20640218-1	chr14	20639718	20640718	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16322.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	25.74	14.75	18.5	25.64	18.66	22.51	15.84	11.94	14.99
Merged-chr5-24841317-1	chr5	24840817	24841817	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053075, intron 1 of 7)	intron (NM_053075, intron 1 of 7)	1044.0	NM_053075	19744.0	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	38.33	46.54	23.12	26.31	29.86	24.11	49.64	41.56	23.73
Merged-chr6-145305775-1	chr6	145305275	145306275	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	55223.0	NR_045598	100039495.0	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	-	predicted gene 15706	ncRNA	102.4	110.59	86.95	95.81	89.1	99.67	136.25	146.8	76.82
Merged-chr11-105447944-1	chr11	105447444	105448444	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039242, intron 3 of 5)	intron (NM_001039242, intron 3 of 5)	8791.0	NM_172568	632687.0	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	10.3	6.91	8.32	4.05	4.2	4.82	2.11	5.31	5.62
Merged-chr9-120708340-1	chr9	120707840	120708840	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131009.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.86	1.84	9.25	13.49	10.26	8.84	1.06	0.44	1.25
Merged-chr17-36024242-1	chr17	36023742	36024742	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-3682.0	NM_008207	15042.0	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	91.53	94.92	89.72	98.51	72.78	90.83	85.55	84.9	46.22
Merged-chr3-136323905-1	chr3	136323405	136324405	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033350, intron 1 of 16)	intron (NM_001033350, intron 1 of 16)	2161.0	NM_001310749	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	45.19	73.26	51.8	45.88	60.65	37.78	64.43	49.96	33.1
Merged-chr4-154854913-1	chr4	154854413	154855413	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1287.0	NM_172878	242800.0	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	4.0	0.92	1.85	2.02	0.0	0.0	2.11	1.33	6.25
Merged-chr13-113610376-1	chr13	113609876	113610876	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130796, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	8188.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	47.48	25.34	32.37	26.31	18.19	32.96	29.57	16.8	7.49
Merged-chr4-125126870-1	chr4	125126370	125127370	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_153159, exon 2 of 6)	exon (NM_153159, exon 2 of 6)	1011.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	143.59	145.15	155.39	118.08	97.5	97.26	152.09	151.66	90.56
Merged-chr11-117476153-1	chr11	117475653	117476653	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8215.0	NR_130966	432615.0	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	-	predicted gene 11733	ncRNA	6.29	1.38	1.85	7.42	7.0	3.22	3.17	4.42	1.25
Merged-chr8-24428525-1	chr8	24428025	24429025	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10421.0	NM_026931	69068.0	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	10.87	10.6	3.7	18.89	13.53	11.25	16.9	16.36	8.74
Merged-chr11-107581462-1	chr11	107580962	107581962	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198298, intron 4 of 31)	intron (NM_198298, intron 4 of 31)	33502.0	NM_198298	78455.0	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	4.58	1.84	0.0	1.35	0.47	4.02	9.51	7.07	6.87
Merged-chr11-20436339-1	chr11	20435839	20436839	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17D2|LTR|ERVK	-103626.0	NM_018861	55963.0	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	4.58	6.45	3.7	2.02	3.73	1.61	2.11	1.33	0.62
Merged-chr1-138921408-1	chr1	138920908	138921908	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-42301.0	NM_001166501	329260.0	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	9.15	5.53	5.55	3.37	2.33	1.61	5.28	5.31	7.49
Merged-chr18-53861458-2	chr18	53860931	53861931	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_152809)	promoter-TSS (NM_152809)	-682.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	62.35	64.97	50.87	47.9	47.12	36.97	45.42	40.24	27.48
Merged-chr16-36659464-1	chr16	36658964	36659964	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	6613.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	26.89	5.07	1.85	14.17	3.73	7.23	9.51	4.86	4.37
Merged-chr5-96758336-1	chr5	96757836	96758836	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175473, intron 62 of 73)	intron (NM_175473, intron 62 of 73)	-35049.0	NM_013470	11745.0	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	1.72	1.38	7.4	2.7	1.4	2.41	1.06	3.1	1.25
Merged-chr5-23440003-1	chr5	23439503	23440503	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026984, intron 1 of 25)	intron (NM_026984, intron 1 of 25)	5574.0	NM_026984	69188.0	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	5.15	5.99	6.47	9.45	7.93	8.04	5.28	6.63	9.99
Merged-chr15-50824099-1	chr15	50823599	50824599	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310481, intron 3 of 5)	MTC|LTR|ERVL-MaLR	64950.0	NM_001310481	83925.0	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	4.58	7.83	17.57	10.12	6.53	12.06	4.22	6.19	9.37
Merged-chr15-83021424-1	chr15	83020924	83021924	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271411, intron 1 of 5)	intron (NM_001271411, intron 1 of 5)	1714.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.44	10.14	24.05	14.17	9.33	32.15	21.12	25.65	16.86
Merged-chr6-34277888-1	chr6	34277388	34278388	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39555.0	NR_037965	626009.0	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	2.29	5.53	0.0	6.07	6.06	3.22	0.0	1.77	5.0
Merged-chr11-121736332-1	chr11	121735832	121736832	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	33905.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	6.29	7.37	0.0	6.07	5.6	12.86	9.51	3.98	8.74
Merged-chr8-61561989-1	chr8	61561489	61562489	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	29180.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	33.75	32.72	13.87	27.66	12.13	29.74	23.24	15.48	8.74
Merged-chr17-34628181-1	chr17	34627681	34628681	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001302394)	promoter-TSS (NM_001302394)	98.0	NM_001302393	54397.0	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	56.06	66.81	70.3	72.87	38.72	90.02	70.76	44.66	52.46
Merged-chr9-15294596-1	chr9	15294096	15295096	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359258, intron 3 of 7)	intron (NM_001359258, intron 3 of 7)	7011.0	NM_133732	70984.0	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	7.44	7.83	18.5	10.12	7.0	3.22	5.28	8.84	11.87
Merged-chr9-108055187-1	chr9	108054687	108055687	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177275, exon 1 of 1)	3' UTR (NM_177275, exon 1 of 1)	2028.0	NM_177275	320844.0	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	8.01	5.53	21.27	1.35	3.27	8.84	4.22	1.33	13.12
Merged-chr13-59970758-1	chr13	59970258	59971258	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58953.0	NR_046142	328263.0	Mm.123405	NR_046142	ENSMUSG00000114531	A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	1.14	1.38	12.95	5.4	10.73	4.82	1.06	3.54	6.25
Merged-chr14-18263659-1	chr14	18263159	18264159	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7322.0	NM_001359897	66480.0	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	7.44	5.99	5.55	11.47	9.8	8.84	5.28	2.21	7.49
Merged-chr15-78270797-1	chr15	78270297	78271297	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14052.0	NR_106137	102465776.0		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	4.58	6.91	5.55	14.17	9.8	12.06	9.51	7.07	11.24
Merged-chr12-85990593-1	chr12	85990093	85991093	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001347395, intron 29 of 32)	intron (NM_001347395, intron 29 of 32)	88448.0	NM_009368	21809.0	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	22.31	20.74	14.8	22.27	18.66	22.51	34.85	21.22	17.49
Merged-chr7-118304968-1	chr7	118304468	118305468	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61061.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.72	4.61	0.0	8.77	1.4	1.61	1.06	2.21	3.75
Merged-chr1-55089035-1	chr1	55088535	55089535	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001356512)	promoter-TSS (NM_001356512)	-792.0	NM_001356512	15510.0	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|CPN60|HSP-60|HSP-65|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	107.55	89.85	57.35	82.32	75.57	56.27	103.51	87.99	48.09
Merged-chr7-118480019-1	chr7	118479519	118480519	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	11956.0	NM_001033380	319622.0	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	76.66	76.49	72.15	106.61	66.71	90.02	84.49	90.64	40.59
Merged-chr1-37505391-1	chr1	37504891	37505891	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 2 of 15)	intron (NM_173870, intron 2 of 15)	-16786.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	13.16	9.22	7.4	12.14	16.33	26.53	17.96	15.03	16.24
Merged-chr14-103694526-1	chr14	103694026	103695026	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045148, exon 3 of 3)	non-coding (NR_045148, exon 3 of 3)	4906.0	NR_045148	70898.0	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.86	0.92	0.0	4.72	5.6	0.0	5.28	2.21	8.74
Merged-chr11-116368311-1	chr11	116367811	116368811	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-32957.0	NM_008240	15223.0	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	4.0	3.23	1.85	3.37	1.4	0.0	10.56	5.31	3.75
Merged-chr1-131974835-1	chr1	131974335	131975335	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145977, intron 1 of 4)	intron (NM_145977, intron 1 of 4)	4226.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	244.84	209.66	193.32	213.21	178.21	186.48	271.44	279.45	156.13
Merged-chr5-137776634-1	chr5	137776134	137777134	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2270.0	NM_001356989	69871.0	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	1.72	1.84	5.55	3.37	2.33	8.84	5.28	1.77	5.0
Merged-chr13-24380805-1	chr13	24380305	24381305	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-34317.0	NM_007717	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	3.43	2.3	3.7	4.05	4.2	1.61	3.17	4.42	5.62
Merged-chr5-36757224-2	chr5	36756732	36757732	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-8553.0	NM_133724	117197.0	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	5.15	0.92	1.85	2.7	1.4	3.22	4.22	1.77	3.12
Merged-chr9-46933398-1	chr9	46932898	46933898	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19795.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	2.29	0.46	18.5	8.1	2.8	1.61	0.0	0.0	3.75
Merged-chr6-121366744-1	chr6	121366244	121367244	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_133661)	TTS (NM_133661)	20047.0	NM_133661	14411.0	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	3.43	0.92	0.0	3.37	3.27	1.61	0.0	0.44	2.5
Merged-chr3-37331375-1	chr3	37330875	37331875	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17278.0	NM_008006	14173.0	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	5.15	3.23	1.85	10.8	13.53	9.65	10.56	8.84	12.49
Merged-chr6-146481610-1	chr6	146481110	146482110	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019923, intron 1 of 56)	intron (NM_019923, intron 1 of 56)	20613.0	NM_010586	16439.0	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	2.86	3.23	1.85	0.67	4.67	1.61	5.28	3.98	3.75
Merged-chr11-76611051-1	chr11	76610551	76611551	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33312.0	NM_198894	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	16.02	16.59	12.02	20.92	13.53	20.9	26.4	25.2	11.24
Merged-chr18-35889202-2	chr18	35888718	35889718	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	34531.0	NM_001357459	67393.0	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	6.86	3.23	4.62	6.75	0.93	0.0	7.39	2.21	1.25
Merged-chr8-61686528-1	chr8	61686028	61687028	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 9 of 21)	intron (NM_001293772, intron 9 of 21)	73570.0	NM_001293773	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	8.01	0.46	3.7	2.7	1.87	1.61	2.11	0.88	4.37
Merged-chr19-54045249-1	chr19	54044749	54045749	+	580.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007417)	promoter-TSS (NM_007417)	67.0	NM_007417	11551.0	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	1.14	1.84	0.0	3.37	0.0	4.02	1.06	1.33	0.62
Merged-chr15-84994215-1	chr15	84993715	84994715	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6244.0	NM_001033273	223739.0	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	33.75	34.56	24.05	31.71	22.39	52.25	40.14	34.49	28.1
Merged-chr1-168430306-1	chr1	168429806	168430806	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183355, intron 1 of 8)	intron (NM_183355, intron 1 of 8)	1863.0	NM_001291509	18514.0	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	5.15	8.29	1.85	12.14	11.66	12.06	8.45	3.54	9.37
Merged-chr15-72980945-1	chr15	72980445	72981445	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	74867.0	NM_029640	76510.0	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	3.43	3.69	5.55	3.37	4.67	1.61	5.28	3.54	5.0
Merged-chr12-9570105-1	chr12	9569605	9570605	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045488, intron 2 of 3)	intron (NR_045488, intron 2 of 3)	480.0	NR_045488	69420.0	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	4.58	2.76	0.0	7.42	1.87	3.22	1.06	0.44	3.12
Merged-chr4-155550646-1	chr4	155550146	155551146	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160016, intron 7 of 11)	intron (NM_001160016, intron 7 of 11)	-11735.0	NM_138671	192185.0	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	16.02	6.45	3.7	11.47	11.66	14.47	13.73	1.77	16.24
Merged-chr18-36282018-1	chr18	36281518	36282518	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008989, intron 1 of 1)	intron (NM_008989, intron 1 of 1)	856.0	NM_008989	19290.0	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	67.5	43.31	35.15	43.86	30.79	24.92	41.19	37.58	22.48
Merged-chr4-59262418-1	chr4	59261918	59262918	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105031, intron 2 of 3)	intron (NR_105031, intron 2 of 3)	2367.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	7.44	3.23	0.0	5.4	10.26	8.84	4.22	3.1	1.25
Merged-chr13-45967698-1	chr13	45967198	45968198	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2707.0	NM_009124	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	91.53	64.05	42.55	51.28	28.92	23.31	57.03	36.26	20.61
Merged-chr3-81127259-1	chr3	81126759	81127759	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019971, intron 1 of 5)	intron (NM_019971, intron 1 of 5)	90843.0	NM_001357746	54635.0	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C|SCDGF|VEGF-E	platelet-derived growth factor, C polypeptide	protein-coding	34.32	32.25	25.9	52.63	40.12	49.83	49.64	39.8	49.34
Merged-chr3-123053394-1	chr3	123052894	123053894	+	580.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18407.0	NM_001355462	59006.0	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	1.14	2.76	3.7	0.67	4.67	1.61	7.39	4.86	1.25
Merged-chr2-92484457-1	chr2	92483957	92484957	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23939.0	NM_145832	228368.0	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	4.58	4.61	12.95	90.41	72.31	170.4	138.36	145.92	134.9
Merged-chr2-165907346-1	chr2	165906846	165907846	+	580.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22508.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	4.0	5.07	3.7	9.45	3.73	1.61	17.96	5.75	6.25
Merged-chr10-30710378-2	chr10	30709882	30710882	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358842, intron 3 of 14)	intron (NM_001358842, intron 3 of 14)	-54515.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	9.72	11.06	11.1	6.75	4.67	8.04	9.51	15.03	1.25
Merged-chr16-57556469-2	chr16	57555969	57556969	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	7227.0	NM_001177871	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	93.24	111.97	59.2	116.73	94.7	86.01	114.07	110.54	63.08
Merged-chr7-84102744-2	chr7	84102247	84103247	+	579.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16242.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	4.58	5.07	3.7	3.37	2.33	6.43	10.56	3.1	12.49
Merged-chr15-6391322-1	chr15	6390822	6391822	+	579.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	intron (NM_001037905, intron 1 of 13)	4574.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	47.48	52.07	50.87	45.21	45.72	49.83	46.47	33.6	22.48
Merged-chr16-44050550-1	chr16	44050050	44051050	+	579.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8542.0	NM_001359085	207798.0	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	14.87	20.74	22.2	14.17	9.8	13.66	22.18	27.86	14.99
Merged-chr8-75154024-2	chr8	75153537	75154537	+	579.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	44528.0	NM_008566	17218.0	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	20.59	30.41	51.8	26.31	14.93	30.54	48.58	25.2	25.61
Merged-chr4-21727032-2	chr4	21726529	21727529	+	579.583374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290420)	promoter-TSS (NM_001290420)	-672.0	NM_001290422	51813.0	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	18.31	21.66	1.85	14.17	12.13	17.68	12.67	8.84	14.99
Merged-chr15-3202449-1	chr15	3201949	3202949	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68318.0	NM_001042613	20363.0	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.58	3.69	0.0	4.72	3.27	1.61	0.0	1.77	1.25
Merged-chr3-96058434-1	chr3	96057934	96058934	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013841)	promoter-TSS (NM_013841)	21.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	80.66	83.4	69.37	74.22	67.64	78.77	73.93	68.09	50.59
Merged-chr15-91661102-1	chr15	91660602	91661602	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12122.0	NM_025730	66725.0	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.0	2.76	1.85	4.72	2.33	3.22	3.17	1.33	9.99
Merged-chr6-92286685-1	chr6	92286185	92287185	+	579.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42035.0	NM_009426	22044.0	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	2.29	2.76	9.25	2.7	0.47	3.22	8.45	8.4	5.62
Merged-chr11-54645310-2	chr11	54644811	54645811	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252494, intron 16 of 28)	ORR1D2|LTR|ERVL-MaLR	49165.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	11.44	26.73	20.35	18.89	26.12	25.72	23.24	24.76	41.84
Merged-chr4-117125653-1	chr4	117125153	117126153	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024078)	promoter-TSS (NR_024078)	72.0	NR_024078	78611.0	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	174.48	211.5	137.82	266.51	283.17	334.38	258.77	311.73	156.76
Merged-chr3-27184661-1	chr3	27184161	27185161	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178772, intron 1 of 4)	intron (NM_178772, intron 1 of 4)	1657.0	NM_178772	320024.0	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	34.32	21.66	13.87	33.06	22.86	17.68	28.52	30.95	12.49
Merged-chr4-88115620-2	chr4	88115105	88116105	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081184, intron 1 of 43)	intron (NM_001081184, intron 1 of 43)	-6435.0	NR_030478	735282.0		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	12.59	9.22	5.55	5.4	11.2	8.04	9.51	8.4	6.25
Merged-chr5-135952031-2	chr5	135951535	135952535	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-17394.0	NM_018871	22628.0	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	13.73	10.14	24.05	16.19	13.53	11.25	15.84	14.15	11.87
Merged-chr4-150603593-1	chr4	150603093	150604093	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	48581.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	22.31	7.83	1.85	22.27	7.93	6.43	38.02	22.99	13.74
Merged-chr19-42713366-1	chr19	42712866	42713866	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39409.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	4.58	7.83	5.55	2.7	7.0	4.82	7.39	11.5	4.37
Merged-chr1-30905204-1	chr1	30904704	30905704	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-41948.0	NM_001081080	213109.0	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik	PHD finger protein 3	protein-coding	2.29	3.69	5.55	6.07	6.53	4.82	2.11	5.75	2.5
Merged-chr11-103173590-1	chr11	103173090	103174090	+	579.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2452.0	NM_019679	57778.0	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	3.43	8.29	5.55	7.42	10.73	12.86	2.11	3.54	7.49
Merged-chr16-21644139-2	chr16	21643678	21644678	+	579.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001285894, exon 46 of 46)	exon (NM_001285894, exon 46 of 46)	50487.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	25.17	22.12	22.2	34.41	46.65	65.91	22.18	28.74	25.61
Merged-chr12-85279787-1	chr12	85279287	85280287	+	579.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025421, intron 2 of 2)	intron (NM_025421, intron 2 of 2)	648.0	NM_025421	66204.0	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	168.18	131.78	98.97	140.34	125.96	71.54	119.35	132.65	47.46
Merged-chr18-15150922-2	chr18	15150393	15151393	+	579.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134112, intron 1 of 4)	CpG	553.0	NM_134112	106931.0	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	1.72	0.0	1.85	3.37	1.4	1.61	4.22	0.44	3.75
Merged-chr7-4297329-2	chr7	4296854	4297854	+	579.125	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23165.0	NM_008848	18729.0	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	5.72	7.83	1.85	3.37	1.87	3.22	4.22	2.21	3.75
Merged-chr12-44202294-1	chr12	44201794	44202794	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	7774.0	NM_013760	27362.0	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.14	0.92	14.8	3.37	2.8	1.61	2.11	1.33	6.25
Merged-chr6-48435879-1	chr6	48435379	48436379	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001085415)	TTS (NM_001085415)	9211.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	3.43	3.69	3.7	4.05	0.93	0.0	2.11	4.42	6.87
Merged-chr4_GL456216_random-38951-1	chr4_GL456216_random	38451	39451	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23070.0	NM_001033326	236082.0	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	0.0	5.31	0.0
Merged-chr1-42714491-1	chr1	42713991	42714991	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1037.0	NR_110495	66620.0	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	3.43	0.46	1.85	0.67	0.0	4.82	3.17	0.0	3.75
Merged-chrX-42188981-1	chrX	42188481	42189481	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	intron (NM_021465, intron 1 of 32)	38280.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	12.59	15.21	22.2	11.47	9.33	6.43	22.18	17.24	11.24
Merged-chr19-44259701-1	chr19	44259201	44260201	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.57	0.46	9.25	2.02	2.8	9.65	3.17	0.88	0.0
Merged-chr7-28299036-1	chr7	28298536	28299536	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007866, exon 4 of 9)	exon (NM_007866, exon 4 of 9)	2749.0	NM_007866	13389.0	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta like canonical Notch ligand 3	protein-coding	8.01	2.3	3.7	0.67	1.4	0.0	2.11	1.77	3.75
Merged-chr16-93744145-1	chr16	93743645	93744645	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 3 of 35)	intron (NM_001357118, intron 3 of 35)	14046.0	NM_001357118	70028.0	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	5.72	5.99	1.85	10.8	5.13	1.61	4.22	1.33	1.25
Merged-chr19-45081517-1	chr19	45081017	45082017	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5430.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	5.15	5.99	0.0	3.37	1.4	1.61	3.17	0.0	2.5
Merged-chr11-23667097-1	chr11	23666597	23667597	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028304, intron 1 of 17)	intron (NM_028304, intron 1 of 17)	1121.0	NM_028304	74467.0	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	59.49	68.66	32.37	71.52	50.85	36.97	77.1	64.11	47.46
Merged-chr16-10972612-1	chr16	10972112	10973112	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	20509.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	16.59	27.65	36.07	20.92	12.13	37.78	14.79	16.8	20.61
Merged-chr1-171699226-1	chr1	171698726	171699726	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360767, intron 2 of 2)	intron (NM_001360767, intron 2 of 2)	17234.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	4.0	3.69	4.62	0.67	2.33	8.04	4.22	1.77	7.49
Merged-chr11-32286989-3	chr11	32286502	32287502	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033981)	promoter-TSS (NM_001033981)	38.0	NM_001033981	544763.0	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	1.14	1.38	5.55	2.7	1.87	2.41	1.06	3.1	1.25
Merged-chr2-102166849-1	chr2	102166349	102167349	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178886, intron 1 of 5)	intron (NM_178886, intron 1 of 5)	19611.0	NM_178886	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.0	0.46	4.62	2.7	4.2	14.47	3.17	0.88	2.5
Merged-chr17-10664648-1	chr17	10664148	10665148	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	175543.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	6.29	2.3	5.55	3.37	4.67	1.61	4.22	2.65	3.75
Merged-chr11-86637883-1	chr11	86637383	86638383	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356531, intron 6 of 11)	intron (NM_001356531, intron 6 of 11)	33392.0	NM_001356531	75909.0	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	8.58	15.67	20.35	12.14	9.8	4.02	27.46	19.01	6.87
Merged-chr15-39745893-1	chr15	39745393	39746393	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289506)	promoter-TSS (NM_001289506)	-37.0	NM_001289506	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.57	0.46	3.7	4.72	1.87	0.0	8.45	2.65	4.37
Merged-chr12-36030279-1	chr12	36029779	36030779	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025359, intron 1 of 5)	AT_rich|Low_complexity|Low_complexity	12199.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	114.41	145.15	134.12	145.74	177.74	114.94	55.98	65.0	17.49
Merged-chr16-17812321-1	chr16	17811821	17812821	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15039.0	NM_153790	224024.0	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	2.86	2.76	1.85	1.35	1.87	0.8	3.17	1.77	1.25
Merged-chrX-10501922-2	chrX	10501419	10502419	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019634, intron 1 of 7)	MIRb|SINE|MIR	16803.0	NM_019634	21912.0	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	2.86	1.84	3.7	1.35	0.47	0.0	0.0	0.88	5.0
Merged-chr11-32625868-1	chr11	32625368	32626368	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16687.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.86	3.69	3.7	5.4	3.73	1.61	5.28	2.65	6.87
Merged-chr8-79139868-1	chr8	79139368	79140368	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001294279, intron 8 of 14)	intron (NM_001294279, intron 8 of 14)	108715.0	NM_026315	67687.0	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	9.15	2.3	3.7	2.7	1.87	1.61	4.22	1.77	0.0
Merged-chr2-93659209-1	chr2	93658709	93659709	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007442, intron 1 of 3)	intron (NM_007442, intron 1 of 3)	16775.0	NM_007442	11695.0	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	6.86	1.84	0.0	0.0	1.4	1.61	2.11	1.77	2.5
Merged-chr7-143696385-1	chr7	143695885	143696885	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199227, intron 14 of 21)	B3|SINE|B2	-10510.0	NR_131763	79201.0	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	4.58	4.15	7.4	2.7	3.27	4.82	6.34	2.21	6.25
Merged-chr9-121458530-1	chr9	121458030	121459030	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357968, intron 12 of 14)	intron (NM_001357968, intron 12 of 14)	37164.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.57	5.53	7.4	4.05	4.67	6.43	1.06	1.33	5.0
Merged-chr13-19842938-1	chr13	19842438	19843438	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18681.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	19.45	21.66	24.05	12.14	14.0	35.37	8.45	2.65	9.37
Merged-chr2-154677924-1	chr2	154677424	154678424	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20898.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	121.28	146.53	104.52	93.79	108.7	90.83	95.06	91.53	79.32
Merged-chr11-98204171-1	chr11	98203671	98204671	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001109626, exon 1 of 14)	exon (NM_001109626, exon 1 of 14)	866.0	NM_001109626	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	168.18	193.07	128.57	146.41	125.49	105.3	171.1	193.23	93.05
Merged-chr1-23062202-1	chr1	23061702	23062702	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40051.0	NM_025746	66755.0	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	4.0	2.3	1.85	0.0	4.2	4.82	0.0	1.33	6.25
Merged-chr10-117375973-1	chr10	117375473	117376473	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001013391, intron 1 of 9)	CpG	1000.0	NM_001013391	432508.0	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	316.35	356.65	299.68	290.8	287.37	255.6	301.01	353.29	214.21
Merged-chr9-124068620-1	chr9	124068120	124069120	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33563.0	NM_009915	12772.0	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	39.47	52.07	35.15	42.51	51.32	58.68	69.71	40.68	67.45
Merged-chr4-99936958-1	chr4	99936458	99937458	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028132, intron 1 of 10)	intron (NM_028132, intron 1 of 10)	7507.0	NM_028132	72157.0	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	14.3	17.51	10.17	26.99	20.53	28.94	16.9	19.9	26.23
Merged-chr5-29844695-1	chr5	29844195	29845195	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108759.0	NR_028426	332993.0	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	38.9	34.56	53.65	37.78	28.92	80.38	40.14	35.37	46.84
Merged-chr4-56802972-1	chr4	56802472	56803472	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026079)	promoter-TSS (NM_026079)	-641.0	NM_026079	230233.0	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	30.89	29.95	12.95	31.71	33.59	31.35	44.36	33.16	28.73
Merged-chr1-138843567-1	chr1	138843067	138844067	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010714, intron 2 of 6)	intron (NM_010714, intron 2 of 6)	-1123.0	NM_001025565	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	3.43	1.38	4.62	6.07	1.4	3.22	3.17	3.54	2.5
Merged-chr8-84193821-1	chr8	84193321	84194321	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-14697.0	NR_029740	387216.0		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	23.45	21.2	14.8	8.77	6.06	0.0	13.73	16.36	26.23
Merged-chr11-104565376-1	chr11	104564876	104565876	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010858, intron 2 of 8)	intron (NM_010858, intron 2 of 8)	-3178.0	NR_130177	100415912.0	Mm.446786	NR_130177		Gm11665	Gm11664	predicted gene 11665	ncRNA	4.0	6.45	3.7	16.19	16.79	11.25	3.17	2.65	1.25
Merged-chr9-72970166-1	chr9	72969666	72970666	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163725, intron 5 of 6)	intron (NM_001163725, intron 5 of 6)	11381.0	NM_001163725	67685.0	Mm.31817	NM_026314	ENSMUSG00000092192	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	8.01	8.29	0.0	5.4	5.6	0.8	5.28	1.77	7.49
Merged-chr2-173660613-1	chr2	173660113	173661113	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024436, intron 1 of 6)	intron (NM_024436, intron 1 of 6)	768.0	NM_024436	19334.0	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	57.21	52.07	49.02	49.93	60.18	69.13	70.76	48.2	43.72
Merged-chr3-86987133-1	chr3	86986633	86987633	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007640, exon 2 of 7)	exon (NM_007640, exon 2 of 7)	547.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	4.58	4.15	9.25	12.14	5.13	4.82	2.11	4.86	3.75
Merged-chr11-23236168-1	chr11	23235668	23236668	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19873.0	NM_001035226	103573.0	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	3.43	3.23	1.85	3.37	1.4	4.82	4.22	2.65	3.12
Merged-chr5-113220780-1	chr5	113220280	113221280	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6129.0	NM_001033428	333048.0	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	7.44	0.92	0.0	8.1	0.93	4.82	0.0	0.0	0.0
Merged-chr11-20729582-1	chr11	20729082	20730082	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181411, intron 1 of 8)	intron (NM_181411, intron 1 of 8)	11974.0	NM_001290545	216549.0	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	4.0	11.52	12.02	6.75	9.33	12.06	8.45	5.75	5.62
Merged-chr13-64361198-1	chr13	64360698	64361698	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_009984)	TTS (NM_009984)	9322.0	NM_009984	13039.0	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	3.43	3.69	11.1	5.4	4.2	7.23	3.17	10.61	2.5
Merged-chr16-30284246-1	chr16	30283746	30284746	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028973)	promoter-TSS (NM_028973)	-992.0	NM_028973	74488.0	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	5.15	2.3	5.55	3.37	0.93	0.8	2.11	1.33	5.0
Merged-chr10-17366281-1	chr10	17365781	17366781	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-270499.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.29	3.23	11.1	1.35	3.27	1.61	1.06	5.75	1.25
Merged-chr7-80504891-1	chr7	80504391	80505391	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042527, intron 5 of 21)	L3|LINE|CR1	30107.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	8.01	5.53	1.85	2.02	5.13	3.22	8.45	3.54	2.5
Merged-chr11-116096991-1	chr11	116096491	116097491	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-9996.0	NM_001347642	22378.0	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	56.06	57.14	25.9	32.39	32.66	34.56	32.74	25.2	40.59
Merged-chr12-112860422-1	chr12	112859922	112860922	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019925, intron 1 of 2)	intron (NM_019925, intron 1 of 2)	494.0	NM_019925	56696.0	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	6.29	6.45	1.85	9.45	6.53	6.43	10.56	2.65	8.74
Merged-chr14-20848451-1	chr14	20847951	20848951	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11789.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	6.86	3.69	5.55	1.35	5.13	4.02	4.22	2.65	6.25
Merged-chr7-64267326-1	chr7	64266826	64267826	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039104, intron 26 of 26)	MTEa|LTR|ERVL-MaLR	-17227.0	NR_105844	102465226.0		NR_105844	ENSMUSG00000098910	Mir6416	Gm27746|mmu-mir-6416	microRNA 6416	ncRNA	7.44	0.46	0.0	2.02	0.93	0.8	2.11	2.21	3.75
Merged-chr16-44141652-1	chr16	44141152	44142152	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	ID4_|SINE|ID	1843.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	58.35	75.57	24.97	64.1	52.25	40.99	50.7	45.99	29.35
Merged-chr6-53376609-1	chr6	53376109	53377109	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327821, intron 3 of 10)	MIRc|SINE|MIR	89306.0	NM_001327821	231991.0	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	7.44	3.23	1.85	4.72	4.2	4.82	5.28	4.42	5.0
Merged-chr14-51219312-1	chr14	51218812	51219812	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	15617.0	NM_017389	503847.0	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	1.72	3.69	0.0	13.49	7.46	4.82	3.17	2.21	8.74
Merged-chr8-84872812-1	chr8	84872312	84873312	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_027954, exon 2 of 5)	exon (NM_027954, exon 2 of 5)	554.0	NM_001168244	71846.0	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	11.44	7.83	3.7	13.49	8.86	8.04	11.62	6.63	8.74
Merged-chr18-37751690-1	chr18	37751190	37752190	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033579)	promoter-TSS (NM_033579)	-89.0	NM_033579	93704.0	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	8.58	2.76	1.85	1.35	3.73	1.61	4.22	1.33	3.12
Merged-chr1-172095625-1	chr1	172095125	172096125	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009938, intron 6 of 32)	intron (NM_009938, intron 6 of 32)	-12876.0	NM_021607	59287.0	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	15.45	8.29	10.17	12.14	13.06	14.47	12.67	26.97	11.87
Merged-chr18-39374610-1	chr18	39374110	39375110	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175164, exon 23 of 23)	3' UTR (NM_175164, exon 23 of 23)	112635.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	9.15	2.3	1.85	3.37	2.33	4.02	1.06	1.33	1.25
Merged-chr19-3709287-1	chr19	3708787	3709787	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358257, intron 1 of 3)	intron (NM_001358257, intron 1 of 3)	876.0	NM_001358257	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	9.72	4.15	3.7	7.42	6.53	3.22	14.79	8.4	6.87
Merged-chr1-175639976-1	chr1	175639476	175640476	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133809, intron 4 of 14)	intron (NM_133809, intron 4 of 14)	7783.0	NM_133809	98256.0	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	2.86	3.69	0.92	5.4	2.33	4.82	2.11	0.0	2.5
Merged-chr12-34847937-1	chr12	34847437	34848437	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	69158.0	NM_001271386	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	8.58	21.2	12.95	12.82	17.26	24.11	22.18	13.27	14.99
Merged-chr1-160044496-1	chr1	160043996	160044996	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_028111, exon 1 of 3)	non-coding (NR_028111, exon 1 of 3)	116.0	NR_028111	67647.0	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	4.0	3.23	2.77	4.05	4.67	0.0	3.17	1.77	1.87
Merged-chr2-26444579-1	chr2	26444079	26445079	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153125, intron 1 of 29)	intron (NM_153125, intron 1 of 29)	637.0	NM_153125	227648.0	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	290.6	288.91	179.44	290.13	264.04	194.52	231.3	244.52	121.78
Merged-chr6-94509034-1	chr6	94508534	94509534	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026255, intron 2 of 9)	intron (NM_026255, intron 2 of 9)	8720.0	NM_026255	67582.0	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	60.07	68.2	47.17	64.1	73.71	51.44	20.07	38.91	16.24
Merged-chr11-116022624-2	chr11	116022078	116023078	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_008211, exon 4 of 4)	3' UTR (NM_008211, exon 4 of 4)	1926.0	NM_008211	15081.0	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	48.05	56.22	16.65	47.9	30.79	16.88	38.02	53.5	11.87
Merged-chr2-156780869-1	chr2	156780369	156781369	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172118, intron 3 of 3)	intron (NM_172118, intron 3 of 3)	5405.0	NM_172118	98932.0	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.57	1.38	7.4	3.37	0.93	0.8	0.0	0.88	1.87
Merged-chr3-103737976-1	chr3	103737476	103738476	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_133859)	promoter-TSS (NM_133859)	25.0	NM_133859	99543.0	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	4.58	5.07	1.85	8.77	7.93	10.45	15.84	13.27	14.99
Merged-chr6-120493506-1	chr6	120493006	120494006	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033567, exon 1 of 1)	exon (NM_033567, exon 1 of 1)	301.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	4.0	1.38	0.0	2.7	0.93	0.0	3.17	0.44	1.25
Merged-chr18-60764032-1	chr18	60763532	60764532	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-10564.0	NM_020600	20044.0	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	65.79	38.25	37.92	68.82	46.65	55.46	72.88	46.87	30.6
Merged-chr8-111145080-1	chr8	111144580	111145580	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040363, intron 1 of 3)	intron (NR_040363, intron 1 of 3)	418.0	NR_040363	434350.0	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	98.39	46.54	62.9	80.97	66.24	69.13	82.38	40.24	34.35
Merged-chr8-119112870-1	chr8	119112370	119113370	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019707, intron 7 of 13)	intron (NM_019707, intron 7 of 13)	-231668.0	NM_024219	68196.0	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	3.43	2.76	1.85	5.4	1.87	5.63	4.22	3.54	3.75
Merged-chr14-33195187-1	chr14	33194687	33195687	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20D|LTR|ERVK	-10121.0	NM_001146022	545030.0	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	42.9	26.73	35.15	27.66	18.19	21.7	20.07	13.71	16.24
Merged-chr5-36497241-1	chr5	36496741	36497741	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 12 of 13)	intron (NM_133910, intron 12 of 13)	12653.0	NM_025725	66717.0	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	4.58	1.38	5.55	6.07	1.87	4.82	3.17	3.1	5.0
Merged-chr10-128008426-1	chr10	128007926	128008926	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013786)	promoter-TSS (NM_013786)	-815.0	NM_001359377	27400.0	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	4.58	7.37	3.7	2.02	4.67	3.22	2.11	0.88	0.0
Merged-chr14-26565094-1	chr14	26564594	26565594	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8764.0	NM_001285467	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	2.86	3.69	12.95	2.02	1.4	2.41	2.11	3.1	0.0
Merged-chr6-33501290-1	chr6	33500790	33501790	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	252162.0	NM_001347089	20336.0	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	2.29	4.61	3.7	4.05	2.33	9.65	5.28	2.21	3.75
Merged-chr10-80398008-1	chr10	80397508	80398508	+	579.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1523.0	NM_013595	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	10.87	10.14	7.4	18.89	14.46	4.02	16.9	15.48	9.99
Merged-chr2-69707161-1	chr2	69706661	69707661	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177244, intron 4 of 13)	intron (NM_177244, intron 4 of 13)	5445.0	NM_177244	320720.0	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	1.14	3.69	0.0	0.0	1.4	0.0	11.62	20.34	6.87
Merged-chr4-132345125-1	chr4	132344625	132345625	+	579.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133878, intron 1 of 9)	CpG	625.0	NM_001197082	100088.0	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	56.06	38.25	27.75	78.27	43.39	30.54	94.0	72.07	24.36
Merged-chr15-80083979-1	chr15	80083479	80084479	+	579.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-573.0	NM_013762	27367.0	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	117.84	151.6	93.42	85.69	91.44	74.75	139.42	151.66	84.94
Merged-chr3-87365353-2	chr3	87364852	87365852	+	578.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009690, intron 2 of 5)	intron (NM_009690, intron 2 of 5)	7471.0	NM_009690	11801.0	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	24.6	29.49	22.2	16.87	15.39	13.66	44.36	49.08	44.34
Merged-chr1-154031075-2	chr1	154030572	154031572	+	578.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131143.0	NM_008131	14645.0	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	16.59	17.97	10.17	10.12	7.93	8.04	5.28	3.98	6.25
Merged-chr13-101847374-1	chr13	101846874	101847874	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79157.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	9.15	8.75	2.77	8.77	5.13	3.22	6.34	8.4	2.5
Merged-chr5-36546674-1	chr5	36546174	36547174	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133910, intron 2 of 13)	intron (NM_133910, intron 2 of 13)	-16051.0	NM_001113364	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	18.31	10.14	8.32	10.12	7.46	16.08	6.34	6.19	3.75
Merged-chr3-20520963-1	chr3	20520463	20521463	+	578.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-153786.0	NM_175086	11608.0	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	1.14	2.76	1.85	4.72	4.2	3.22	2.11	1.77	8.74
Merged-chr2-91088033-2	chr2	91087525	91088525	+	578.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8653.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	88.67	111.05	103.59	73.54	54.58	119.76	71.82	81.36	68.07
Merged-chr4-55342793-2	chr4	55342290	55343290	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1A4|LTR|ERVL-MaLR	-7252.0	NM_009011	19359.0	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	10.3	5.99	11.1	8.77	7.46	10.45	3.17	4.86	18.11
Merged-chr5-72831165-1	chr5	72830665	72831665	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013689, intron 1 of 17)	HAL1|LINE|L1	37283.0	NM_001113461	21682.0	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	5.72	2.76	3.7	2.02	6.06	1.61	4.22	0.88	7.49
Merged-chr4-63216552-1	chr4	63216052	63217052	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	1140.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	1.72	3.69	0.0	0.0	0.93	4.82	7.39	0.88	2.5
Merged-chr19-10678718-1	chr19	10678218	10679218	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021453)	promoter-TSS (NM_021453)	-647.0	NM_021453	58803.0	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	4.58	2.3	0.0	8.77	1.4	1.61	1.06	0.88	2.5
Merged-chr14-70554422-1	chr14	70553922	70554922	+	578.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021877, intron 1 of 19)	CpG	366.0	NM_021877	15460.0	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	1.14	1.38	3.7	0.67	1.4	4.82	2.11	0.44	1.25
Merged-chr1-143731123-1	chr1	143730623	143731623	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-8226.0	NM_001038593	69367.0	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.57	2.76	1.85	0.67	1.4	1.61	3.17	2.65	9.99
Merged-chr11-98202184-1	chr11	98201684	98202684	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1121.0	NM_001109628	69131.0	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	110.98	137.31	109.14	97.16	124.09	131.82	121.46	177.31	72.45
Merged-chr13-36203230-1	chr13	36202730	36203730	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039189, intron 1 of 5)	B4A|SINE|B4	85587.0	NM_001039189	69955.0	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.29	3.69	1.85	4.05	1.87	4.02	1.06	2.65	1.25
Merged-chr9-71834934-2	chr9	71834426	71835426	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	61170.0	NM_001253864	21406.0	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.29	5.99	5.55	6.75	7.93	1.61	2.11	3.1	8.12
Merged-chr3-88087922-1	chr3	88087422	88088422	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033484, intron 4 of 37)	B2_Mm2|SINE|B2	5871.0	NM_001033484	404710.0	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	8.58	2.76	0.0	2.7	3.73	1.61	2.11	1.33	2.5
Merged-chr3-157629951-2	chr3	157629463	157630463	+	578.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011196, intron 2 of 2)	MLT1J|LTR|ERVL-MaLR	63071.0	NM_011196	19218.0	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	1.72	2.3	9.25	0.0	3.73	0.0	1.06	2.65	2.5
Merged-chr15-84842676-2	chr15	84842185	84843185	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356573, intron 2 of 12)	intron (NM_001356573, intron 2 of 12)	12414.0	NM_001356573	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	4.58	5.99	9.25	5.4	6.06	0.0	8.45	7.07	14.36
Merged-chr11-75514526-1	chr11	75514026	75515026	+	578.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004157, intron 3 of 10)	intron (NM_001004157, intron 3 of 10)	985.0	NM_001004157	380713.0	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	11.44	16.13	24.97	12.14	11.2	12.86	11.62	6.19	11.24
Merged-chr11-44439315-1	chr11	44438815	44439815	+	578.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31233.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	6.86	8.29	1.85	6.75	5.13	6.43	44.36	25.65	17.49
Merged-chr2-73584795-3	chr2	73584284	73585284	+	578.416687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_153820)	promoter-TSS (NR_153820)	-76.0	NR_153820	102633437.0		NR_153820		Chrna1os	Gm13705|Gm31264	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand	ncRNA	2.29	4.15	3.7	2.7	4.67	1.61	2.11	1.77	0.0
Merged-chr4-135921565-1	chr4	135921065	135922065	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024243, intron 1 of 7)	intron (NM_024243, intron 1 of 7)	839.0	NM_024243	71665.0	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	112.12	88.01	87.87	43.18	57.38	49.03	51.75	53.5	33.1
Merged-chrX-77446920-1	chrX	77446420	77447420	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64307.0	NM_020601	21372.0	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.57	0.92	0.0	4.05	2.33	4.82	2.11	1.77	5.0
Merged-chr4-128698720-3	chr4	128698216	128699216	+	578.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	9978.0	NM_018774	54383.0	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic 2	protein-coding	25.74	23.04	38.85	32.39	19.13	24.92	34.85	12.82	19.36
Merged-chr7-143748591-1	chr7	143748091	143749091	+	578.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6628.0	NM_024289	79196.0	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	1.72	1.38	0.0	5.4	0.93	1.61	4.22	0.88	1.25
Merged-chr11-87591268-2	chr11	87590788	87591788	+	578.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357901)	promoter-TSS (NM_001357901)	-878.0	NM_001357901	170749.0	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	141.87	193.53	121.17	177.45	177.74	130.21	167.93	232.58	108.04
Merged-chr19-37502697-2	chr19	37502214	37503214	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	37460.0	NR_131009	78640.0	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	46.91	36.4	14.8	28.34	14.46	24.11	42.25	26.09	26.23
Merged-chr4-106988167-2	chr4	106987661	106988661	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355532, intron 1 of 14)	intron (NM_001355532, intron 1 of 14)	64976.0	NM_001355532	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	8.58	1.84	5.55	3.37	0.93	4.82	6.34	2.65	5.0
Merged-chr13-34963870-2	chr13	34963363	34964363	+	578.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026947)	promoter-TSS (NM_026947)	-54.0	NM_026947	69123.0	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	2.29	1.38	2.77	4.72	2.33	4.02	2.11	1.77	3.75
Merged-chr19-41483624-1	chr19	41483124	41484124	+	578.166687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-41628.0	NM_001326287	627352.0	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	106.4	70.04	70.3	76.24	43.39	83.59	105.62	51.73	42.47
Merged-chr4-6369635-1	chr4	6369135	6370135	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001098227, intron 1 of 8)	intron (NM_001098227, intron 1 of 8)	3955.0	NM_001098227	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	97.82	105.52	89.72	118.75	102.63	116.55	133.08	134.86	68.7
Merged-chr7-109439241-1	chr7	109438741	109439741	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054103)	promoter-TSS (NM_054103)	-188.0	NM_054103	117229.0	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	1.14	3.23	1.85	2.7	2.33	1.61	4.22	1.77	1.87
Merged-chr18-58564564-1	chr18	58564064	58565064	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	(CA)n|Simple_repeat|Simple_repeat	8324.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	21.74	32.25	17.57	26.99	26.12	41.8	13.73	10.61	24.36
Merged-chr8-80878976-1	chr8	80878476	80879476	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021356, intron 1 of 9)	intron (NM_021356, intron 1 of 9)	1503.0	NM_021356	14388.0	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	25.74	41.47	36.07	39.13	35.45	40.99	28.52	21.67	13.12
Merged-chr3-96764694-1	chr3	96764194	96765194	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026406, intron 3 of 8)	B1F2|SINE|Alu	37083.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	20.59	11.52	29.6	24.96	14.93	24.11	28.52	18.57	14.99
Merged-chr1-65054700-1	chr1	65054200	65055200	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-3537.0	NM_007777	12968.0	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	5.15	4.15	9.25	15.52	7.0	11.25	7.39	5.75	3.75
Merged-chr1-91095143-1	chr1	91094643	91095643	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008515, intron 10 of 22)	intron (NM_008515, intron 10 of 22)	41699.0	NM_001310732	16978.0	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	14.3	19.35	24.97	14.17	14.93	34.56	29.57	17.24	13.12
Merged-chr13-97441903-1	chr13	97441403	97442403	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	6933.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	102.4	86.63	72.15	41.83	23.33	57.87	69.71	74.73	27.48
Merged-chr17-25832184-1	chr17	25831684	25832684	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_037243)	promoter-TSS (NR_037243)	-756.0	NR_037243	100526479.0		NR_037243	ENSMUSG00000093076	Mir3082	mir-3082|mmu-mir-3082	microRNA 3082	ncRNA	40.04	41.93	61.05	30.36	25.19	47.42	46.47	40.24	55.58
Merged-chr13-14022074-1	chr13	14021574	14022574	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178337, intron 3 of 16)	MMVL30-int|LTR|ERV1	17564.0	NR_130788	70430.0	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	4.0	10.6	5.55	4.72	7.93	16.88	3.17	5.31	6.87
Merged-chr11-108041914-1	chr11	108041414	108042414	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011101, intron 5 of 16)	intron (NM_011101, intron 5 of 16)	45066.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.43	4.61	7.4	4.05	2.8	8.04	5.28	2.65	1.87
Merged-chr11-87428014-1	chr11	87427514	87428514	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199293, intron 1 of 30)	PB1D7|SINE|Alu	423.0	NM_001199293	83560.0	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	18.31	32.72	24.97	16.19	14.93	22.51	15.84	17.24	21.23
Merged-chr7-123276802-1	chr7	123276302	123277302	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	61936.0	NM_146198	233836.0	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	7.44	3.69	7.4	2.02	2.33	3.22	9.51	2.65	5.0
Merged-chr2-151748477-1	chr2	151747977	151748977	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_138568, exon 3 of 3)	non-coding (NR_138568, exon 3 of 3)	2988.0	NR_138568	75283.0	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	1.72	0.92	0.0	0.67	0.47	0.0	2.11	0.0	1.25
Merged-chr1-153492764-1	chr1	153492264	153493264	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5104.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	35.47	50.69	61.97	48.58	49.45	61.89	54.92	44.22	31.23
Merged-chr1-79761103-3	chr1	79760564	79761564	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	705.0	NM_001111279	69368.0	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	91.53	84.32	44.4	113.35	90.04	63.5	102.45	93.74	48.09
Merged-chr9-66624528-1	chr9	66624028	66625028	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31413.0	NM_001302116	235441.0	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	5.15	0.46	5.55	1.35	1.87	0.0	2.11	2.21	2.5
Merged-chr5-9015603-1	chr5	9015103	9016103	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-18457.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	6.29	4.61	3.7	4.05	3.73	0.8	4.22	7.96	2.5
Merged-chr1-23397788-1	chr1	23397288	23398288	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14613.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	3.43	3.23	3.7	5.4	3.73	4.82	8.45	4.42	5.0
Merged-chr12-99306020-1	chr12	99305520	99306520	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183186, intron 3 of 5)	RLTR20A4|LTR|ERVK	-143212.0	NR_038130	67639.0	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	26.31	10.6	1.85	13.49	10.73	12.86	3.17	6.63	3.12
Merged-chr10-59227912-1	chr10	59227412	59228412	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	5990.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	6.29	5.99	7.4	8.1	4.67	11.25	9.51	5.31	13.74
Merged-chr11-52066017-1	chr11	52065517	52066517	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	-32807.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	6.86	6.91	3.7	9.45	7.0	12.86	14.79	17.69	9.99
Merged-chr13-110905655-1	chr13	110905155	110906155	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131193, intron 3 of 4)	L1MA4|LINE|L1	-1809.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	4.58	5.53	8.32	4.05	4.67	4.82	9.51	4.86	7.49
Merged-chr12-3903642-1	chr12	3903142	3904142	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153743, intron 14 of 17)	intron (NM_153743, intron 14 of 17)	11898.0	NM_153743	13435.0	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	65.79	62.67	61.97	75.57	64.38	40.99	69.71	80.92	37.47
Merged-chr17-67261150-1	chr17	67260650	67261650	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357625, intron 1 of 32)	L1MA5|LINE|L1	93309.0	NM_008984	19274.0	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	14.87	26.26	20.35	26.31	16.33	22.51	65.48	68.98	34.35
Merged-chr14-27029927-2	chr14	27029425	27030425	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR41|LTR|ERVL	-9076.0	NM_134437	171463.0	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	2.86	2.76	6.47	3.37	0.47	1.61	4.22	3.98	1.25
Merged-chr4-85374248-1	chr4	85373748	85374748	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019535, intron 3 of 8)	intron (NM_019535, intron 3 of 8)	168792.0	NM_019535	20404.0	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	3.43	2.76	0.0	2.02	4.2	1.61	12.67	7.07	3.12
Merged-chrX-164004985-1	chrX	164004485	164005485	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181315, intron 2 of 7)	MER20|DNA|hAT-Charlie	23025.0	NM_181315	56078.0	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	0.57	5.07	0.0	2.7	2.33	0.0	0.0	0.88	1.25
Merged-chr5-123024740-1	chr5	123024240	123025240	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175423, intron 1 of 1)	intron (NM_175423, intron 1 of 1)	9666.0	NM_175423	109305.0	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	52.63	66.81	62.9	58.03	60.18	90.02	60.2	71.63	73.69
Merged-chr11-3450224-1	chr11	3449724	3450724	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145355, intron 1 of 7)	intron (NM_145355, intron 1 of 7)	-2213.0	NR_028317	71523.0	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	7.44	10.6	14.8	6.75	15.39	6.43	5.28	6.63	5.0
Merged-chr13-49326885-1	chr13	49326385	49327385	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14664.0	NM_001039179	76895.0	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	12.59	5.07	1.85	16.19	7.46	8.84	7.39	3.54	5.0
Merged-chr5-125268263-1	chr5	125267763	125268763	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	72831.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	2.86	0.92	1.85	1.35	1.87	0.0	3.17	1.33	1.87
Merged-chrX-19112925-1	chrX	19112425	19113425	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33463.0	NR_029806	723827.0		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	2.86	2.3	3.7	2.7	0.93	0.0	2.11	3.1	2.5
Merged-chr8-56054022-1	chr8	56053522	56054522	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080438, intron 4 of 9)	intron (NM_080438, intron 4 of 9)	113197.0	NM_080438	110304.0	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	1.72	4.61	2.77	5.4	4.2	3.22	1.06	3.98	0.0
Merged-chr19-6302688-1	chr19	6302188	6303188	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3769.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	10.87	12.9	2.77	10.8	6.53	13.66	9.51	8.4	6.25
Merged-chr12-88467008-1	chr12	88466508	88467508	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-89685.0	NR_045888	71818.0	Mm.490789	NR_045888	ENSMUSG00000113434	3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	4.0	1.38	3.7	2.02	1.87	3.22	1.06	0.88	3.75
Merged-chr2-27756278-1	chr2	27755778	27756778	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011305, exon 8 of 10)	exon (NM_011305, exon 8 of 10)	45695.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	10.87	12.44	21.27	11.47	15.39	43.4	11.62	7.07	23.11
Merged-chr14-11328356-1	chr14	11327856	11328856	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	45879.0	NR_105811	102466641.0		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	2.29	0.46	0.0	5.4	2.33	3.22	3.17	2.65	5.62
Merged-chr18-20742556-1	chr18	20742056	20743056	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	3848.0	NM_019737	56386.0	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	39.47	47.46	39.77	95.14	84.9	76.36	101.39	73.84	34.97
Merged-chr7-110004648-1	chr7	110004148	110005148	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_037959, intron 1 of 2)	MIR|SINE|MIR	1998.0	NR_037959	69781.0	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	21.74	40.09	33.3	33.06	23.33	26.53	31.69	36.7	41.22
Merged-chr14-30460041-2	chr14	30459551	30460551	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_131095, intron 2 of 3)	intron (NR_131095, intron 2 of 3)	2015.0	NR_131095	77710.0	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	8.01	3.23	3.7	5.4	2.33	3.22	2.11	1.77	2.5
Merged-chr2-17081516-1	chr2	17081016	17082016	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER3D-int|LTR|ERVK	-67790.0	NR_040632	75069.0	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	2.86	1.84	3.7	3.37	0.93	4.82	1.06	3.98	1.25
Merged-chr7-19747008-1	chr7	19746508	19747508	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008990, intron 1 of 8)	C-rich|Low_complexity|Low_complexity	2565.0	NM_008990	19294.0	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	14.3	6.91	14.8	7.42	2.8	8.84	8.45	3.54	11.87
Merged-chr3-102961379-1	chr3	102960879	102961879	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201622, intron 1 of 10)	intron (NM_201622, intron 1 of 10)	2754.0	NM_201619	381463.0	Mm.331269	NM_198658	ENSMUSG00000048938	Nr1h5	Fxrb	nuclear receptor subfamily 1, group H, member 5	protein-coding	2.86	2.76	5.55	6.07	7.46	1.61	3.17	3.54	1.25
Merged-chr14-70078447-1	chr14	70077947	70078947	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289925, intron 2 of 2)	CpG-4626	652.0	NM_001289927	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	9.72	2.76	9.25	7.42	2.33	3.22	7.39	1.33	3.75
Merged-chr7-88034207-1	chr7	88033707	88034707	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081414, intron 6 of 9)	intron (NM_001081414, intron 6 of 9)	-243878.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.29	6.45	1.85	2.02	2.33	1.61	7.39	4.42	2.5
Merged-chr15-97672411-1	chr15	97671911	97672911	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33411.0	NM_028003	71919.0	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	30.32	21.66	9.25	47.23	27.06	24.11	13.73	15.03	8.12
Merged-chr17-28722545-1	chr17	28722045	28723045	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168513, intron 3 of 11)	intron (NM_001168513, intron 3 of 11)	29977.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	9.15	12.44	5.55	10.8	11.2	14.47	3.17	12.38	7.49
Merged-chr11-116146865-1	chr11	116146365	116147365	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172571, intron 24 of 30)	intron (NM_172571, intron 24 of 30)	-7997.0	NM_024177	60441.0	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	56.63	64.51	50.87	87.71	90.97	90.02	68.65	51.29	41.22
Merged-chr4-59615187-1	chr4	59614687	59615687	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301367, intron 11 of 11)	intron (NM_001301367, intron 11 of 11)	-11024.0	NM_001015681	230259.0	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	6.86	5.99	3.7	1.35	6.53	3.22	3.17	3.1	6.87
Merged-chrX-164269503-1	chrX	164269003	164270003	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027153)	promoter-TSS (NM_027153)	72.0	NM_027153	69656.0	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding	3.43	1.84	0.0	2.7	0.93	2.41	1.06	0.0	3.75
Merged-chr11-44435920-1	chr11	44435420	44436420	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	34628.0	NM_024475	79560.0	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	9.15	4.61	17.57	3.37	10.73	5.63	14.79	10.17	7.49
Merged-chr17-26463732-1	chr17	26463232	26464232	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	44740.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	9.15	6.91	0.0	20.24	24.72	48.23	11.62	15.48	27.48
Merged-chr1-59472302-1	chr1	59471802	59472802	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9845.0	NM_008057	14369.0	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	5.15	9.22	3.7	1.35	1.4	1.61	8.45	11.94	2.5
Merged-chr3-51914073-1	chr3	51913573	51914573	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	190933.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	6.86	7.83	1.85	4.72	3.27	1.61	1.06	3.98	0.0
Merged-chr6-87524999-1	chr6	87524499	87525499	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	8260.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	30.32	27.19	36.07	43.86	52.25	36.97	29.57	23.43	23.73
Merged-chr2-38944167-1	chr2	38943667	38944667	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172854, intron 2 of 7)	RLTR17|LTR|ERVK	12187.0	NM_172854	241327.0	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	3.43	2.3	5.55	4.72	4.67	2.41	1.06	2.21	2.5
Merged-chrX-167242658-1	chrX	167242158	167243158	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001313761, exon 3 of 3)	3' UTR (NM_001313761, exon 3 of 3)	21671.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	4.58	4.15	5.55	6.75	2.33	5.63	10.56	4.86	7.49
Merged-chr11-54264766-1	chr11	54264266	54265266	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010556)	TTS (NM_010556)	2513.0	NM_010556	16187.0	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	3.43	2.76	4.62	6.07	3.27	1.61	2.11	0.88	0.0
Merged-chr5-64999321-1	chr5	64998821	64999821	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026667, intron 3 of 13)	intron (NM_026667, intron 3 of 13)	29003.0	NR_030577	100124451.0		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	6.29	6.91	12.95	4.05	7.46	11.25	11.62	7.96	3.75
Merged-chr5-65390943-1	chr5	65390443	65391443	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001310612)	promoter-TSS (NM_001310612)	488.0	NM_011292	20005.0	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	270.01	247.9	185.92	253.02	243.05	167.19	210.18	213.57	117.41
Merged-chr2-167055367-1	chr2	167054867	167055867	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001033196, exon 3 of 14)	exon (NM_001033196, exon 3 of 14)	-7567.0	NR_138563	68949.0	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	55.49	50.69	55.5	47.23	38.25	55.46	71.82	61.9	44.97
Merged-chr3-142640274-1	chr3	142639774	142640774	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa-int|LTR|ERVL-MaLR	-16328.0	NR_105802	102465200.0		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	2.86	3.23	0.0	5.4	1.4	1.61	6.34	1.77	1.25
Merged-chr6-72431369-1	chr6	72430869	72431869	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_019802)	TTS (NM_019802)	-7314.0	NR_046011	78108.0	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	5.15	5.07	13.87	6.75	7.46	8.04	10.56	8.84	18.74
Merged-chr15-90084449-1	chr15	90083949	90084949	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-139862.0	NM_001033441	380959.0	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.57	1.38	12.02	6.07	1.4	1.61	0.0	3.1	1.25
Merged-chr17-87140924-1	chr17	87140424	87141424	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33245.0	NM_019654	56468.0	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	14.87	4.61	4.62	4.05	6.06	3.22	7.39	3.54	1.87
Merged-chr19-11051186-1	chr19	11050686	11051686	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_102366)	promoter-TSS (NR_102366)	-620.0	NR_102366	107350.0	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	90.38	142.84	91.57	82.99	65.31	92.44	97.17	134.42	104.3
Merged-chr16-91314297-1	chr16	91313797	91314797	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44528.0	NM_016968	50914.0	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	1.14	5.53	0.0	0.0	3.27	3.22	6.34	3.54	2.5
Merged-chr4-154997991-1	chr4	154997491	154998491	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356470, intron 10 of 22)	RLTR28|LTR|ERVL	12993.0	NM_175556	269615.0	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	5.15	1.84	2.77	4.05	2.8	0.0	0.0	2.65	3.75
Merged-chr6-38691251-1	chr6	38690751	38691751	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28182.0	NM_001101507	665180.0	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	72.65	88.93	49.02	99.18	99.83	62.7	70.76	87.55	37.47
Merged-chr4-32189833-1	chr4	32189333	32190333	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	225726.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	9.72	18.43	22.2	13.49	10.26	25.72	19.01	6.19	9.37
Merged-chr2-154703015-2	chr2	154702532	154703532	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	46006.0	NM_029362	75608.0	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	2.86	0.92	0.0	3.37	1.4	0.0	4.22	0.88	3.75
Merged-chr6-88306536-1	chr6	88306036	88307036	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149744, intron 3 of 5)	intron (NR_149744, intron 3 of 5)	84268.0	NM_019964	56691.0	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	32.04	17.05	42.55	22.94	13.53	24.92	12.67	18.57	19.98
Merged-chr13-91990959-1	chr13	91990459	91991459	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2917.0	NM_009027	19418.0	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	1.72	0.92	3.7	3.37	7.0	3.22	1.06	3.1	0.0
Merged-chr3-137975667-1	chr3	137975167	137976167	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 1 of 8)	intron (NM_011932, intron 1 of 8)	5882.0	NM_001310753	26377.0	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	8.01	5.07	24.05	12.14	6.06	4.82	7.39	5.31	7.49
Merged-chr14-20655893-1	chr14	20655393	20656393	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021508, intron 1 of 5)	intron (NM_021508, intron 1 of 5)	647.0	NM_021508	59011.0	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	49.77	38.71	32.37	49.25	43.85	70.73	48.58	31.39	45.59
Merged-chr13-75709822-1	chr13	75709322	75710322	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138953, intron 1 of 11)	intron (NM_138953, intron 1 of 11)	2338.0	NM_138953	192657.0	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	1.14	4.15	14.8	2.02	0.93	4.82	3.17	4.86	5.0
Merged-chr1-153493516-2	chr1	153493013	153494013	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-5853.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	34.32	47.92	60.12	43.18	41.99	50.64	57.03	49.52	41.84
Merged-chr2-151876356-1	chr2	151875856	151876856	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33429.0	NM_001040689	228770.0	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	2.86	2.3	7.4	3.37	1.4	6.43	4.22	0.44	2.5
Merged-chr14-65147155-1	chr14	65146655	65147655	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-49049.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	6.86	5.99	3.7	2.7	2.33	0.8	4.22	2.65	3.75
Merged-chr12-35055334-1	chr12	35054834	35055834	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014973, intron 1 of 25)	intron (NM_001014973, intron 1 of 25)	8145.0	NM_001014973	217463.0	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	73.79	74.19	32.37	125.5	107.76	49.83	99.28	101.7	44.97
Merged-chr18-58583276-1	chr18	58582776	58583776	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 4 of 9)	intron (NM_001081072, intron 4 of 9)	27036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	19.45	12.44	21.27	22.94	17.26	41.8	12.67	5.75	9.37
Merged-chr18-77758543-1	chr18	77758043	77759043	+	578.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357531, intron 9 of 10)	intron (NM_001357531, intron 9 of 10)	9256.0	NM_146089	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	4.0	3.23	7.4	4.72	4.2	11.25	6.34	12.38	8.74
Merged-chr10-51489236-1	chr10	51488736	51489736	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1662.0	NM_001291894	14728.0	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	12.59	25.34	14.8	19.57	23.79	28.13	4.22	6.63	22.48
Merged-chr5-115569324-1	chr5	115568824	115569824	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172719, intron 1 of 57)	intron (NM_172719, intron 1 of 57)	4061.0	NM_172719	231659.0	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	3.43	0.0	9.25	10.12	2.8	1.61	1.06	2.65	1.25
Merged-chr7-58742874-1	chr7	58742374	58743374	+	578.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009728, intron 2 of 20)	MTEb|LTR|ERVL-MaLR	84672.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	1.72	1.84	3.7	2.7	1.87	9.65	3.17	7.07	3.75
Merged-chr8-83729571-1	chr8	83729071	83730071	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163029, intron 4 of 17)	intron (NM_001163029, intron 4 of 17)	-5587.0	NR_106188	102465897.0		NR_106188	ENSMUSG00000098465	Mir1668	Gm27590|mmu-mir-1668	microRNA 1668	ncRNA	2.29	10.14	11.1	8.77	9.8	20.09	8.45	8.4	1.25
Merged-chr9-105779146-1	chr9	105778646	105779646	+	578.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172927, intron 6 of 7)	intron (NM_172927, intron 6 of 7)	30502.0	NM_172927	245026.0	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	13.16	6.91	8.32	17.54	9.33	12.86	1.06	1.33	1.87
Merged-chr9-3002727-3	chr9	3002241	3003241	+	577.777771	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	36002.0	NR_039546	100628572.0		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	12.01	86.17	7.4	22.94	85.37	9.65	45.42	27.41	15.61
Merged-chr13-64403654-2	chr13	64403128	64404128	+	577.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-28925.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	17.73	19.35	19.42	30.36	13.53	29.74	5.28	5.31	7.49
Merged-chr9-111119841-1	chr9	111119341	111120341	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027742, intron 2 of 13)	intron (NM_027742, intron 2 of 13)	1730.0	NM_001164838	71268.0	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	20.59	23.5	5.55	50.6	21.93	11.25	23.24	22.99	8.74
Merged-chr4-148171001-1	chr4	148170501	148171501	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10333.0	NM_176848	230904.0	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	3.43	4.15	5.55	1.35	0.0	4.82	2.11	2.21	0.0
Merged-chr17-47039031-3	chr17	47038532	47039532	+	577.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-28500.0	NM_001177374	224826.0	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	3.43	3.23	2.77	6.07	2.8	3.22	7.39	1.77	3.75
Merged-chr6-48433625-1	chr6	48433125	48434125	+	577.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085417, intron 4 of 4)	intron (NM_001085417, intron 4 of 4)	11465.0	NM_001085415	68910.0	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	5.15	4.15	0.0	1.35	0.93	4.82	8.45	5.31	8.74
Merged-chr6-29773241-1	chr6	29772741	29773741	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	4798.0	NM_001171000	74340.0	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	16.59	9.68	1.85	9.45	7.93	12.86	10.56	15.92	13.74
Merged-chr15-102108141-1	chr15	102107641	102108641	+	577.666687	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355636, intron 10 of 28)	intron (NM_001355636, intron 10 of 28)	5207.0	NM_153533	209039.0	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	1.72	1.84	0.0	2.02	5.13	0.0	1.06	0.44	3.12
Merged-chr5-144770410-1	chr5	144769910	144770910	+	577.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081362, intron 1 of 70)	intron (NM_001081362, intron 1 of 70)	1618.0	NM_001081362	100683.0	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	37.18	47.92	49.02	38.46	41.05	57.07	89.78	88.88	50.59
Merged-chr15-78772523-2	chr15	78772053	78773053	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008595, intron 1 of 7)	intron (NM_008595, intron 1 of 7)	892.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	21.17	22.12	13.87	37.78	23.33	54.66	42.25	39.8	19.98
Merged-chr2-60216638-1	chr2	60216138	60217138	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020575, intron 1 of 9)	intron (NM_020575, intron 1 of 9)	6702.0	NM_020575	57438.0	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	20.59	27.19	20.35	22.27	13.53	12.86	17.96	17.69	15.61
Merged-chr5-107726066-1	chr5	107725566	107726566	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001267621)	promoter-TSS (NM_001267621)	-261.0	NM_001267621	14581.0	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	3.43	3.69	0.0	5.4	5.13	1.61	12.67	1.33	6.25
Merged-chr4-46458664-2	chr4	46458177	46459177	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130889, intron 1 of 6)	intron (NM_130889, intron 1 of 6)	7751.0	NM_130889	67628.0	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.44	4.15	1.85	9.45	1.87	4.82	7.39	3.1	5.0
Merged-chr12-80366703-1	chr12	80366203	80367203	+	577.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177267, intron 6 of 8)	L2a|LINE|L2	24974.0	NR_037207	100526530.0		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	8.01	3.23	8.32	4.05	1.87	1.61	45.42	37.14	6.87
Merged-chr9-56068121-1	chr9	56067621	56068621	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21855.0	NM_011193	19200.0	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	8.58	3.23	1.85	2.02	4.2	4.82	4.22	3.98	8.74
Merged-chr11-50262220-1	chr11	50261720	50262720	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 3 of 4)	RSINE1|SINE|B4	-23688.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	4.58	5.53	1.85	3.37	0.47	4.02	9.51	1.77	5.0
Merged-chr8-111875960-1	chr8	111875460	111876460	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025781, intron 1 of 2)	intron (NM_025781, intron 1 of 2)	715.0	NM_025781	66817.0	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	36.04	42.85	20.35	43.18	49.92	42.6	44.36	34.05	28.1
Merged-chr6-85117938-2	chr6	85117420	85118420	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034902, intron 2 of 2)	intron (NM_001034902, intron 2 of 2)	8174.0	NM_001034902	545861.0	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	2.29	2.76	2.77	2.7	1.4	0.0	0.0	0.44	3.75
Merged-chr5-8996246-1	chr5	8995746	8996746	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023733, intron 2 of 17)	intron (NM_023733, intron 2 of 17)	900.0	NM_023733	74114.0	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	22.31	28.57	29.6	31.71	31.72	21.7	15.84	34.49	6.25
Merged-chr7-59232181-1	chr7	59231681	59232681	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033962, intron 1 of 10)	intron (NM_001033962, intron 1 of 10)	3431.0	NM_173010	22215.0	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	10.87	5.07	2.77	11.47	5.13	14.47	3.17	10.17	1.25
Merged-chr7-111026661-2	chr7	111026172	111027172	+	577.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2279.0	NM_009431	22083.0	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	2.29	8.75	5.55	8.1	5.6	0.0	4.22	2.21	2.5
Merged-chr8-124827588-1	chr8	124827088	124828088	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198632, intron 8 of 9)	intron (NM_198632, intron 8 of 9)	34569.0	NM_198632	330863.0	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	2.29	2.76	0.0	2.02	2.8	2.41	2.11	1.77	7.49
Merged-chr8-6114686-1	chr8	6114186	6115186	+	577.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1009399.0	NM_011388	20494.0	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	8.58	11.52	9.25	2.02	4.2	3.22	11.62	3.54	4.37
Merged-chr5-123973608-1	chr5	123973108	123974108	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145070)	promoter-TSS (NM_145070)	-20.0	NM_145070	29816.0	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	7.44	3.69	0.92	5.4	3.27	0.0	4.22	2.21	2.5
Merged-chr17-32951660-1	chr17	32951160	32952160	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_033585, exon 3 of 3)	non-coding (NR_033585, exon 3 of 3)	-4299.0	NM_130882	170716.0	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.57	1.38	3.7	3.37	3.73	1.61	1.06	0.88	3.12
Merged-chr8-33517811-1	chr8	33517311	33518311	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33500.0	NR_033589	628431.0	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.57	0.92	1.85	6.07	2.33	0.0	4.22	2.21	8.12
Merged-chr4-123565256-1	chr4	123564756	123565756	+	577.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	intron (NM_001199137, intron 1 of 92)	-51164.0	NR_105824	102465214.0		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	57.78	91.7	64.75	78.27	56.45	77.16	84.49	89.76	68.07
Merged-chr10-99577482-2	chr10	99576989	99577989	+	577.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-31682.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	7.44	3.69	5.55	9.45	1.4	0.8	3.17	1.33	1.87
Merged-chr7-106240703-1	chr7	106240203	106241203	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13B2|LTR|ERVK	-25363.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	24.6	25.34	33.3	6.75	6.53	13.66	23.24	22.99	8.74
Merged-chr11-5886447-1	chr11	5885947	5886947	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8191.0	NM_008894	18972.0	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	4.58	2.3	1.85	4.05	1.87	4.82	1.06	0.0	4.37
Merged-chr18-44718689-1	chr18	44718189	44719189	+	577.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-56423.0	NM_001085374	328949.0	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	1.72	3.23	0.0	3.37	1.4	0.8	2.11	2.65	9.99
Merged-chr14-72532856-1	chr14	72532356	72533356	+	577.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177147.0	NM_207636	319448.0	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	2.29	1.84	2.77	4.72	2.33	8.04	2.11	0.88	3.75
Merged-chr5-65846772-1	chr5	65846272	65847272	+	577.25	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16797.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.15	1.84	0.0	5.4	1.87	1.61	1.06	3.1	2.5
Merged-chr2-102791926-1	chr2	102791426	102792426	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45166.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	17.73	11.52	16.65	5.4	7.46	3.22	7.39	8.4	12.49
Merged-chr1-40330648-1	chr1	40330148	40331148	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356478, intron 4 of 10)	intron (NM_001356478, intron 4 of 10)	6059.0	NM_133193	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	10.87	5.53	6.47	4.72	6.06	4.82	4.22	6.19	1.87
Merged-chr2-14073198-1	chr2	14072698	14073698	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001356337)	promoter-TSS (NM_001356337)	736.0	NR_038162	70957.0	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	32.04	54.37	50.87	41.16	67.18	60.28	54.92	67.21	34.97
Merged-chr13-101694106-1	chr13	101693606	101694606	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077495, intron 7 of 15)	intron (NM_001077495, intron 7 of 15)	-1476.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	14.87	5.99	6.47	8.1	7.46	11.25	12.67	7.07	4.37
Merged-chr6-31178436-1	chr6	31177936	31178936	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	40038.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	28.03	34.56	33.3	33.74	28.46	26.53	32.74	26.97	33.72
Merged-chr2-129333681-1	chr2	129333181	129334181	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-23709.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	6.29	4.61	11.1	2.02	4.2	0.8	11.62	3.1	2.5
Merged-chr7-120947849-1	chr7	120947349	120948349	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025298)	TTS (NM_025298)	30105.0	NM_001164096	26939.0	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	18.31	25.34	24.05	39.81	27.52	43.4	13.73	20.78	13.12
Merged-chr1-64879120-1	chr1	64878620	64879620	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	77704.0	NM_001039493	241075.0	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	7.44	13.36	5.55	15.52	15.39	24.92	13.73	9.73	17.49
Merged-chr7-122979276-2	chr7	122978778	122979778	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175023, exon 3 of 3)	3' UTR (NM_175023, exon 3 of 3)	8714.0	NM_175023	19647.0	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6, ubiquitin ligase	protein-coding	28.6	20.74	7.4	9.45	6.06	12.86	7.39	12.38	3.75
Merged-chr19-10174026-1	chr19	10173526	10174526	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8862.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	23.45	24.88	19.42	35.76	22.39	27.33	12.67	11.94	9.99
Merged-chr2-153291848-1	chr2	153291348	153292348	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	MIR3|SINE|MIR	432.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	143.59	126.72	106.37	100.53	124.56	58.68	109.84	99.49	49.96
Merged-chr17-35200216-1	chr17	35199716	35200716	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001278601, exon 3 of 3)	exon (NM_001278601, exon 3 of 3)	1791.0	NM_013693	21926.0	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	59.49	35.94	58.27	37.78	20.53	51.44	39.08	26.09	34.97
Merged-chr18-55125039-1	chr18	55124539	55125539	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-132448.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.86	1.38	2.77	8.1	0.93	7.23	5.28	3.54	13.74
Merged-chr2-32130609-1	chr2	32130109	32131109	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20539.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	6.86	3.23	1.85	5.4	4.2	4.82	2.11	1.33	5.62
Merged-chr5-112342506-1	chr5	112342006	112343006	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138646)	promoter-TSS (NM_138646)	534.0	NM_001359388	70118.0	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	340.37	327.16	238.64	265.84	243.98	225.86	309.46	310.84	151.14
Merged-chr15-97918227-1	chr15	97917727	97918727	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9931.0	NM_009504	22337.0	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D (1,25-dihydroxyvitamin D3) receptor	protein-coding	4.58	1.84	0.0	2.7	6.06	3.22	4.22	1.33	4.37
Merged-chr4-134547221-1	chr4	134546721	134547721	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029100, intron 3 of 11)	intron (NM_029100, intron 3 of 11)	4945.0	NM_029100	74777.0	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	11.44	9.22	3.7	10.12	8.86	1.61	28.52	26.53	8.12
Merged-chr11-73109981-1	chr11	73109481	73110481	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 2 of 30)	intron (NM_001361245, intron 2 of 30)	19386.0	NM_172944	16407.0	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	8.58	2.3	1.85	14.84	4.2	10.45	7.39	0.0	3.12
Merged-chr1-106351707-1	chr1	106351207	106352207	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133821, intron 10 of 16)	intron (NM_133821, intron 10 of 16)	179838.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	5.15	5.53	1.85	8.1	2.8	6.43	4.22	7.52	3.75
Merged-chr4-138000910-1	chr4	138000410	138001410	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	3085.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	15.45	14.75	9.25	23.62	14.93	19.29	19.01	11.94	13.12
Merged-chr9-59660743-1	chr9	59660243	59661243	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001253883, intron 1 of 10)	intron (NM_001253883, intron 1 of 10)	4375.0	NM_011099	18746.0	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	22.88	14.28	22.2	21.59	20.53	16.88	23.24	15.92	43.09
Merged-chr11-118238077-1	chr11	118237577	118238577	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011180, intron 1 of 12)	intron (NM_011180, intron 1 of 12)	10515.0	NM_001112699	19157.0	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	81.23	105.06	74.0	76.24	79.31	106.9	101.39	88.43	78.07
Merged-chr15-81804881-1	chr15	81804381	81805381	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153484, intron 1 of 3)	intron (NM_153484, intron 1 of 3)	2208.0	NM_153484	21685.0	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	24.03	40.09	37.92	22.27	23.79	35.37	22.18	22.99	23.11
Merged-chr5-90895216-1	chr5	90894716	90895716	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	3971.0	NM_008176	14825.0	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	8.01	9.68	5.55	14.17	9.8	13.66	6.34	12.38	9.99
Merged-chr1-52133363-1	chr1	52132863	52133863	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001205313, intron 6 of 24)	intron (NM_001205313, intron 6 of 24)	13741.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	6.29	6.91	22.2	5.4	4.2	5.63	10.56	5.75	2.5
Merged-chr11-55022737-2	chr11	55022248	55023248	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	10723.0	NR_138556	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	75.51	62.67	35.15	51.95	12.6	6.43	21.12	14.15	11.24
Merged-chr11-61418102-2	chr11	61417614	61418614	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	35878.0	NM_009548	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	5.72	2.76	5.55	6.07	0.93	0.8	7.39	1.33	3.75
Merged-chr12-32912935-1	chr12	32912435	32913435	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA6|LINE|L1	40854.0	NR_044986	74076.0	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	2.29	1.84	5.55	2.7	0.93	1.61	1.06	2.21	1.25
Merged-chr7-83893787-1	chr7	83893287	83894287	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023403, intron 1 of 2)	intron (NM_023403, intron 1 of 2)	1787.0	NM_023403	67943.0	Mm.117365	NM_023403	ENSMUSG00000038503	Mesd	2210015O11Rik|AW537813|Mesdc2|mKIAA0081|mesd|msd	mesoderm development LRP chaperone	protein-coding	6.29	11.06	7.4	9.45	6.53	4.82	6.34	5.31	8.74
Merged-chr13-35447879-1	chr13	35447379	35448379	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB2|LINE|L1	-211983.0	NM_009881	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	1.72	4.15	0.0	6.07	1.4	0.0	2.11	2.21	2.5
Merged-chr7-73550494-1	chr7	73549994	73550994	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_037569, intron 3 of 4)	intron (NR_037569, intron 3 of 4)	7901.0	NR_037569	69170.0	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	18.31	15.67	26.82	11.47	8.4	31.35	29.57	15.92	19.98
Merged-chr1-64611657-1	chr1	64611157	64612157	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025964, intron 2 of 2)	B1_Mus1|SINE|Alu	5511.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	14.3	15.21	9.25	8.1	6.53	13.66	13.73	23.43	19.98
Merged-chr8-71725664-1	chr8	71725164	71726164	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	17.0	NR_131256	74015.0	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.57	4.15	1.85	3.37	0.47	1.61	2.11	3.98	0.0
Merged-chr14-31408830-1	chr14	31408330	31409330	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347585, intron 2 of 7)	intron (NM_001347585, intron 2 of 7)	8847.0	NM_001347585	24056.0	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	41.76	39.63	27.75	55.33	52.25	73.95	53.87	51.29	31.85
Merged-chr7-92641136-1	chr7	92640636	92641636	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-3994.0	NM_028665	73845.0	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	17.73	19.81	16.65	10.8	15.39	22.51	16.9	20.34	26.23
Merged-chr10-79766511-1	chr10	79766011	79767011	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_027505, intron 1 of 7)	CpG	441.0	NM_144528	70294.0	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	24.03	19.81	24.97	33.06	12.6	22.51	26.4	10.17	9.37
Merged-chr14-63409981-1	chr14	63409481	63410481	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007549, intron 1 of 12)	intron (NM_007549, intron 1 of 12)	7206.0	NM_007549	12143.0	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	111.55	123.49	68.45	93.79	137.62	123.78	98.23	107.45	45.59
Merged-chr3-22142576-1	chr3	22142076	22143076	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030732, intron 1 of 15)	intron (NM_030732, intron 1 of 15)	65924.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	17.16	18.89	11.1	8.77	8.4	4.82	10.56	7.52	7.49
Merged-chr9-24774595-1	chr9	24774095	24775095	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_020496)	promoter-TSS (NM_020496)	-292.0	NM_001205085	57246.0	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.57	0.46	5.55	1.35	1.87	1.61	2.11	0.44	1.25
Merged-chr9-64794554-1	chr9	64794054	64795054	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16457.0	NM_001162917	102442.0	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	12.01	5.99	4.62	10.12	5.13	4.82	8.45	4.86	4.37
Merged-chr11-103402408-1	chr11	103401908	103402908	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 2 of 11)	intron (NM_183034, intron 2 of 11)	10256.0	NM_183034	353047.0	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	86.38	63.59	54.57	74.22	61.58	72.34	117.24	101.7	39.35
Merged-chr12-113487868-1	chr12	113487368	113488368	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1697.0	NM_001009545	238405.0	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	3.43	0.46	4.62	2.7	1.87	0.0	1.06	0.0	0.0
Merged-chr14-22183437-1	chr14	22182937	22183937	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	163725.0	NM_028275	76633.0	Mm.489898	NM_028275	ENSMUSG00000063458	Lrmda	1700112E06Rik|2700009F18Rik	leucine rich melanocyte differentiation associated	protein-coding	4.58	1.84	3.7	6.07	1.87	7.23	2.11	2.65	3.75
Merged-chr1-38898044-1	chr1	38897544	38898544	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_145142, exon 1 of 7)	5' UTR (NM_145142, exon 1 of 7)	116.0	NM_145142	98388.0	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	1.14	1.38	1.85	4.05	0.93	1.61	0.0	0.44	7.49
Merged-chr19-5178796-1	chr19	5178296	5179296	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153129, intron 1 of 23)	RLTR13D3|LTR|ERVK	-60388.0	NM_008451	16594.0	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	2.29	1.38	0.0	4.05	1.87	5.63	9.51	3.98	5.0
Merged-chr9-123801728-1	chr9	123801228	123802228	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110253, intron 14 of 17)	intron (NM_001110253, intron 14 of 17)	-4749.0	NM_030712	80901.0	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	12.59	11.52	18.5	10.8	9.33	30.54	13.73	6.63	8.74
Merged-chr7-51972744-1	chr7	51972244	51973244	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330607, intron 7 of 7)	intron (NM_001330607, intron 7 of 7)	32970.0	NR_027704	75744.0	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	2.29	1.84	1.85	2.7	2.33	0.0	0.0	5.31	2.5
Merged-chr10-62498448-1	chr10	62497948	62498948	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	B2_Mm1t|SINE|B2	9309.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	5.15	1.84	5.55	4.72	1.4	0.8	2.11	1.77	7.49
Merged-chr4-8536950-1	chr4	8536450	8537450	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021518, intron 1 of 7)	intron (NM_021518, intron 1 of 7)	1306.0	NM_021518	59021.0	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	30.32	46.54	38.85	24.96	27.52	35.37	50.7	35.82	18.74
Merged-chr16-91480652-1	chr16	91480152	91481152	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-4563.0	NM_010508	15975.0	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	4.58	5.99	8.32	5.4	3.73	4.82	7.39	16.36	8.74
Merged-chr9-37454648-1	chr9	37454148	37455148	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21473.0	NM_001164767	19649.0	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	2.86	3.69	3.7	3.37	1.4	3.22	6.34	3.1	1.25
Merged-chr2-39006278-1	chr2	39005778	39006778	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1147.0	NM_025592	66489.0	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	25.17	13.36	27.75	21.59	10.73	17.68	12.67	19.9	16.86
Merged-chr13-67871054-1	chr13	67870554	67871554	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7728.0	NM_001001185	408058.0	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0.57	1.84	0.0	0.67	0.47	1.61	9.51	6.63	9.37
Merged-chr4-137331875-1	chr4	137331375	137332375	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009861, intron 3 of 5)	ID_B1|SINE|B4	25884.0	NM_009861	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	41.76	40.09	37.92	47.9	31.26	42.6	61.26	41.56	24.36
Merged-chr2-158502563-1	chr2	158502063	158503063	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145635)	promoter-TSS (NM_145635)	-49.0	NM_145635	246747.0	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	10.3	5.99	2.77	8.1	4.67	12.86	5.28	7.07	2.5
Merged-chr11-78436177-1	chr11	78435677	78436677	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13943.0	NM_022411	20500.0	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc-1|Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	2.86	0.46	3.7	3.37	2.33	6.43	2.11	1.77	5.0
Merged-chr11-102140731-1	chr11	102140231	102141231	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4782.0	NM_145829	217214.0	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	6.86	2.3	3.7	5.4	2.33	0.0	2.11	1.77	0.0
Merged-chr5-139746024-1	chr5	139745524	139746524	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9691.0	NM_174850	231830.0	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	4.0	2.3	5.55	5.4	2.33	2.41	0.0	1.77	0.0
Merged-chr15-38074708-1	chr15	38074208	38075208	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001112721, intron 1 of 58)	intron (NM_001112721, intron 1 of 58)	4146.0	NM_001112721	70790.0	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	10.87	16.13	7.4	23.62	13.53	8.04	20.07	13.71	3.75
Merged-chr10-8519855-1	chr10	8519355	8520355	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-1030.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	70.93	97.23	59.2	72.19	62.05	49.83	48.58	72.07	44.97
Merged-chr11-97489809-1	chr11	97489309	97490309	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001289118)	TTS (NM_001289118)	10531.0	NM_001289118	100141474.0	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	2.86	1.84	0.0	4.05	1.4	1.61	2.11	1.33	6.25
Merged-chr15-58697319-1	chr15	58696819	58697819	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY5_I-int|LTR|ERVK	126108.0	NM_175212	74868.0	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	14.3	15.67	14.8	14.17	18.19	14.47	12.67	12.82	7.49
Merged-chr16-30925743-1	chr16	30925243	30926243	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155689.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	9.15	6.91	14.8	12.82	2.33	9.65	8.45	4.86	8.74
Merged-chr5-138222339-1	chr5	138221839	138222839	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3565.0	NM_001013773	381680.0	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	6.86	6.45	12.02	10.12	5.6	11.25	3.17	2.65	0.0
Merged-chr17-34280207-1	chr17	34279707	34280707	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER12|LTR|ERVK	7564.0	NM_010378	14960.0	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	7.44	5.07	1.85	3.37	2.33	1.61	2.11	2.21	11.87
Merged-chr9-21221089-1	chr9	21220589	21221589	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18243.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	100.68	116.58	69.37	163.28	174.47	82.79	208.07	231.25	76.19
Merged-chr9-113837202-1	chr9	113836702	113837702	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286600, intron 3 of 34)	intron (NM_001286600, intron 3 of 34)	24616.0	NM_001286602	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	4.58	6.45	11.1	8.1	11.2	12.06	7.39	1.33	7.49
Merged-chr18-39272453-1	chr18	39271953	39272953	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 17 of 21)	intron (NM_001361073, intron 17 of 21)	214792.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	2.29	0.92	1.85	2.7	4.67	5.63	4.22	7.52	3.75
Merged-chr14-69029302-1	chr14	69028802	69029802	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009285)	promoter-TSS (NM_009285)	13.0	NM_009285	20855.0	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	5.72	3.23	5.55	5.4	2.33	15.27	3.17	1.77	1.87
Merged-chr8-70343863-1	chr8	70343363	70344363	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_030680, intron 2 of 23)	intron (NM_030680, intron 2 of 23)	9416.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	2.86	5.53	19.42	5.4	7.0	17.68	6.34	4.42	11.87
Merged-chr7-83810250-1	chr7	83809750	83810750	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15411.0	NM_029335	75556.0	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	13.16	8.29	6.47	15.52	9.8	16.08	6.34	3.1	11.24
Merged-chr1-55521305-1	chr1	55520805	55521805	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	115359.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.44	3.69	9.25	6.75	8.86	3.22	6.34	3.98	5.62
Merged-chr8-34815416-1	chr8	34814916	34815916	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	7806.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	9.72	2.3	1.85	3.37	0.47	0.8	2.11	1.77	3.75
Merged-chr15-82046559-1	chr15	82046059	82047059	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011482, intron 1 of 2)	intron (NM_011482, intron 1 of 2)	1039.0	NM_011482	20826.0	Mm.299312	NM_011482	ENSMUSG00000063480	Snu13	FA-1|Fta1|Nhp2l1|Ssfa1	SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)	protein-coding	36.04	46.08	43.47	27.66	31.26	24.92	43.3	33.16	28.1
Merged-chr2-4517796-1	chr2	4517296	4518296	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177843, intron 7 of 23)	intron (NM_001177843, intron 7 of 23)	-41958.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	10.87	6.45	14.8	9.45	7.46	4.82	13.73	11.94	5.0
Merged-chr10-42914479-1	chr10	42913979	42914979	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359264, intron 2 of 7)	Charlie18a|DNA|hAT-Charlie	53967.0	NM_001359264	268297.0	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	Scm polycomb group protein like 4	protein-coding	2.86	3.69	0.0	2.7	7.0	8.04	3.17	5.31	1.25
Merged-chr8-31215288-1	chr8	31214788	31215788	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286425, intron 3 of 3)	intron (NM_001286425, intron 3 of 3)	27957.0	NM_001286425	171167.0	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	2.29	1.38	0.0	0.67	1.4	3.22	2.11	0.44	0.0
Merged-chr8-25522985-1	chr8	25522485	25523485	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079908, intron 1 of 17)	intron (NM_001079908, intron 1 of 17)	4226.0	NM_001079908	14182.0	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	2.86	6.45	11.1	5.4	1.87	0.0	4.22	3.1	5.0
Merged-chr10-40024872-1	chr10	40024372	40025372	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144821, intron 1 of 3)	CpG	396.0	NM_144821	215929.0	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	8.58	3.23	0.0	2.02	1.4	0.0	5.28	2.21	2.5
Merged-chr7-74679116-2	chr7	74678634	74679634	+	577.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-124354.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	8.58	7.83	1.85	4.05	10.73	4.82	13.73	19.46	14.99
Merged-chr9-106566613-1	chr9	106566113	106567113	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4354.0	NM_026090	67320.0	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	5.15	6.91	5.55	3.37	4.2	9.65	0.0	2.65	0.0
Merged-chr14-20179231-1	chr14	20178731	20179731	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021542, intron 1 of 4)	intron (NM_021542, intron 1 of 4)	2551.0	NM_021542	16529.0	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	1.72	0.46	1.85	2.7	1.4	3.22	3.17	3.54	5.0
Merged-chr5-114700252-1	chr5	114699752	114700752	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER54A|LTR|ERVL	-7527.0	NM_029992	77832.0	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	114.98	87.09	63.82	88.39	80.71	82.79	97.17	102.14	71.2
Merged-chr6-108232277-1	chr6	108231777	108232777	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010585, intron 2 of 61)	intron (NM_010585, intron 2 of 61)	19181.0	NM_010585	16438.0	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	6.86	3.69	0.0	3.37	0.93	3.22	1.06	1.33	2.5
Merged-chr6-134333329-1	chr6	134332829	134333829	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153848, intron 3 of 8)	intron (NR_153848, intron 3 of 8)	-63000.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	30.89	17.51	14.8	15.52	15.86	12.86	9.51	6.19	6.87
Merged-chr19-29464208-1	chr19	29463708	29464708	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021396, intron 5 of 5)	B2_Mm2|SINE|B2	53289.0	NM_021396	58205.0	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	52.63	64.05	62.9	81.64	62.51	62.7	74.99	79.59	45.59
Merged-chr4-141387537-1	chr4	141387037	141388037	+	577.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024412, intron 16 of 19)	B3|SINE|B2	10562.0	NM_001146307	12733.0	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	9.72	2.76	1.85	1.35	2.33	0.0	3.17	0.88	0.0
Merged-chrX-60026894-1	chrX	60026394	60027394	+	577.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305797, intron 5 of 6)	intron (NM_001305797, intron 5 of 6)	27430.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.0	0.0	1.85	1.35	0.47	1.61	0.0	0.0	1.25
Merged-chr16-38363265-2	chr16	38362767	38363767	+	576.833374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022318, intron 1 of 3)	Charlie24|DNA|hAT-Charlie	1077.0	NM_022318	64082.0	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	4.0	2.3	7.4	4.72	1.87	8.04	2.11	1.33	1.87
Merged-chr6-72345884-2	chr6	72345377	72346377	+	576.833313	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_138592)	promoter-TSS (NM_138592)	-702.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	121.28	112.89	75.85	86.36	84.44	89.22	135.19	162.72	69.95
Merged-chr4-132816200-2	chr4	132815710	132816710	+	576.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-19846.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	128.71	120.73	100.82	95.81	66.24	100.47	98.23	110.54	71.82
Merged-chr12-103099345-2	chr12	103098833	103099833	+	576.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081017, intron 26 of 48)	intron (NM_001081017, intron 26 of 48)	142813.0	NM_133364	170952.0	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	4.58	3.69	0.0	3.37	4.2	1.61	5.28	2.65	3.75
Merged-chr6-127142628-3	chr6	127142132	127143132	+	576.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-6757.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	11.44	7.83	3.7	2.7	1.87	3.22	4.22	0.44	0.0
Merged-chr9-22519742-1	chr9	22519242	22520242	+	576.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360259, intron 5 of 22)	intron (NM_001360259, intron 5 of 22)	44027.0	NM_181316	319845.0	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	4.0	3.69	3.7	8.1	9.33	4.82	12.67	8.84	6.25
Merged-chr6-127268205-2	chr6	127267686	127268686	+	576.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39781.0	NR_073373	232386.0	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	3.43	1.38	5.55	2.7	0.47	2.41	2.11	0.0	2.5
Merged-chr1-89646892-1	chr1	89646392	89647392	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037136, intron 6 of 16)	intron (NM_001037136, intron 6 of 16)	37000.0	NR_015540	74403.0	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	7.44	5.07	1.85	5.4	2.33	3.22	2.11	4.86	12.49
Merged-chr5-123860609-1	chr5	123860109	123861109	+	576.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	X7A_LINE|LINE|CR1	4907.0	NM_030701	80885.0	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	22.31	19.35	24.05	16.87	14.0	10.45	24.29	21.67	20.61
Merged-chr11-99202532-2	chr11	99202022	99203022	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28495.0	NM_020618	57376.0	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	40.04	23.96	25.9	18.22	10.73	15.27	26.4	16.8	22.48
Merged-chr4-130794266-1	chr4	130793766	130794766	+	576.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	1729.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	164.75	199.98	165.57	195.67	229.99	205.77	293.62	343.12	141.77
Merged-chr2-92037110-1	chr2	92036610	92037610	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12940.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	3.43	1.38	7.4	4.72	1.87	6.43	1.06	3.1	3.75
Merged-chr8-124744828-1	chr8	124744328	124745328	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081120, intron 1 of 1)	intron (NM_001081120, intron 1 of 1)	6981.0	NM_001081120	69627.0	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	26.89	27.65	23.12	13.49	11.2	18.49	3.17	3.1	0.0
Merged-chr19-46136267-2	chr19	46135849	46136849	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007703)	TTS (NM_007703)	4450.0	NM_007703	12686.0	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.57	0.0	0.0	2.02	1.4	4.82	7.39	0.44	1.25
Merged-chr12-56030726-1	chr12	56030226	56031226	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	194360.0	NR_155205	52592.0	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	2.29	6.91	5.55	10.12	14.46	8.04	10.56	5.75	5.0
Merged-chr10-96376767-2	chr10	96376274	96377274	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	150567.0	NR_110448	74881.0	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	50.34	38.71	54.57	49.25	30.32	45.82	34.85	32.72	28.73
Merged-chr11-75195337-1	chr11	75194837	75195837	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177708, intron 1 of 1)	CpG	1344.0	NM_177708	237847.0	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	5.72	3.23	5.55	7.42	2.8	0.0	4.22	5.31	6.87
Merged-chr14-66278442-1	chr14	66277942	66278942	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	intron (NM_001162366, intron 1 of 30)	2610.0	NM_001162366	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	33.18	30.41	32.37	25.64	22.86	18.49	29.57	24.76	23.11
Merged-chr11-116418719-2	chr11	116418220	116419220	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5688.0	NM_027258	217340.0	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	24.03	8.29	7.4	18.22	9.8	9.65	10.56	12.82	14.99
Merged-chr5-116023467-1	chr5	116022967	116023967	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031869, intron 1 of 6)	intron (NM_031869, intron 1 of 6)	961.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	50.91	44.7	59.2	39.13	22.39	40.19	38.02	34.05	27.48
Merged-chr18-74213050-1	chr18	74212550	74213550	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR30E_MM|LTR|ERV1	-3162.0	NM_028868	74322.0	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	10.87	13.82	10.17	14.17	19.59	36.97	15.84	15.03	16.86
Merged-chr1-163900353-2	chr1	163899847	163900847	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001305643, intron 19 of 19)	intron (NM_001305643, intron 19 of 19)	-28753.0	NM_001286002	240880.0	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	8.01	5.07	7.4	6.07	4.67	1.61	1.06	4.86	0.0
Merged-chr18-79246392-1	chr18	79245892	79246892	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137001.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.29	3.69	0.0	9.45	3.73	3.22	3.17	1.77	2.5
Merged-chr1-165844746-2	chr1	165844216	165845216	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113391, intron 1 of 7)	intron (NM_001113391, intron 1 of 7)	56035.0	NM_001113392	12503.0	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	2.86	1.38	4.62	4.72	3.27	0.0	6.34	3.54	1.87
Merged-chr19-45813496-2	chr19	45812992	45813992	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	-1201.0	NM_001276358	80906.0	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	5.15	5.07	1.85	3.37	3.27	3.22	3.17	2.65	0.0
Merged-chr14-25116563-1	chr14	25116063	25117063	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7302.0	NR_153781	102634576.0	Mm.317855	NR_153781		Gm32123	-	predicted gene, 32123	ncRNA	0.0	3.23	7.4	2.7	2.33	1.61	3.17	0.88	0.0
Merged-chr1-136128089-1	chr1	136127589	136128589	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046169, intron 2 of 2)	intron (NR_046169, intron 2 of 2)	3094.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	17.73	18.89	13.87	32.39	19.13	28.13	27.46	29.63	21.23
Merged-chr11-120030390-1	chr11	120029890	120030890	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	11391.0	NM_001198787	11302.0	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	5.15	5.99	1.85	5.4	2.33	8.84	8.45	4.42	1.25
Merged-chr4-107552959-1	chr4	107552459	107553459	+	576.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	118240.0	NM_147221	230587.0	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	5.15	3.23	7.4	1.35	3.27	3.22	2.11	3.54	2.5
Merged-chr9-15542036-1	chr9	15541536	15542536	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359604, intron 2 of 2)	intron (NM_001359604, intron 2 of 2)	36541.0	NM_133214	170748.0	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	7.44	3.69	5.55	10.12	7.93	6.43	3.17	3.1	5.0
Merged-chr11-89019532-1	chr11	89019032	89020032	+	576.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	20129.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	21.17	16.13	29.6	14.17	13.06	33.76	25.35	13.27	36.22
Merged-chr15-27664798-3	chr15	27664316	27665316	+	576.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	intron (NM_198301, intron 1 of 6)	16726.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	169.33	152.52	120.24	174.08	120.36	141.47	164.76	150.34	117.41
Merged-chr11-69092513-3	chr11	69092004	69093004	+	576.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009497)	TTS (NM_009497)	3976.0	NM_009497	22318.0	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|Vamp-2|sybII	vesicle-associated membrane protein 2	protein-coding	27.46	19.35	16.65	19.57	9.33	18.49	27.46	18.13	16.86
Merged-chr1-64246750-1	chr1	64246250	64247250	+	576.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-125361.0	NM_033563	93691.0	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.86	3.69	0.0	4.72	4.67	20.9	3.17	3.54	3.75
Merged-chr16-93973791-1	chr16	93973291	93974291	+	576.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019500, intron 1 of 2)	intron (NM_019500, intron 1 of 2)	35046.0	NM_019500	56173.0	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	4.58	4.15	0.92	6.75	3.73	6.43	4.22	0.44	3.75
Merged-chr14-102884501-2	chr14	102884020	102885020	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	98112.0	NR_039592	100628599.0		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	98.39	118.42	96.2	91.76	76.51	61.89	67.6	95.95	58.08
Merged-chr5-65881355-2	chr5	65880866	65881866	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17797.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	50.34	51.15	36.07	33.74	20.06	42.6	38.02	26.53	26.85
Merged-chr14-121915882-2	chr14	121915399	121916399	+	576.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182806)	promoter-TSS (NM_182806)	-125.0	NM_182806	110168.0	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	18.88	33.18	19.42	18.89	9.8	9.65	23.24	12.38	25.61
Merged-chr13-49058691-2	chr13	49058199	49059199	+	576.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290313, intron 21 of 29)	intron (NM_001290313, intron 21 of 29)	89629.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	4.0	2.3	0.0	0.67	3.27	1.61	1.06	0.88	1.87
Merged-chr9-46218321-2	chr9	46217832	46218832	+	576.083374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 21 of 24)	intron (NM_027498, intron 21 of 24)	-10298.0	NM_009692	11806.0	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	4.58	2.76	0.0	2.02	3.27	4.82	3.17	2.65	2.5
Merged-chr2-160864257-1	chr2	160863757	160864757	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177263, intron 1 of 3)	intron (NM_177263, intron 1 of 3)	8733.0	NM_177263	320799.0	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	2.86	7.83	0.92	5.4	2.33	4.82	2.11	6.19	3.75
Merged-chr9-119265901-1	chr9	119265401	119266401	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359582, intron 8 of 18)	intron (NM_001359582, intron 8 of 18)	-34209.0	NR_033303	109280.0	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	36.04	35.94	31.45	41.83	30.32	49.03	43.3	35.37	39.97
Merged-chr2-126932035-1	chr2	126931535	126932535	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023220, intron 1 of 14)	intron (NM_023220, intron 1 of 14)	1200.0	NM_023220	66552.0	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	38.9	52.99	37.92	42.51	37.79	30.54	77.1	97.28	34.35
Merged-chr1-181538396-1	chr1	181537896	181538896	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26945.0	NM_207280	403180.0	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	4.58	2.3	5.55	6.07	3.27	1.61	4.22	2.65	4.37
Merged-chr5-32934831-1	chr5	32934331	32935331	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360014, intron 24 of 40)	B2_Mm2|SINE|B2	71110.0	NM_001170567	277854.0	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	16.02	12.44	9.25	6.75	4.2	16.08	12.67	16.8	19.98
Merged-chr1-171479184-1	chr1	171478684	171479684	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-24294.0	NM_019484	56009.0	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	4.58	1.38	4.62	4.72	2.33	1.61	5.28	4.42	0.0
Merged-chr15-80012963-1	chr15	80012463	80013463	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011057, intron 1 of 6)	CpG	1845.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	50.91	33.18	39.77	95.14	79.31	95.65	43.3	30.07	33.1
Merged-chr11-85837971-1	chr11	85837471	85838471	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009324, exon 6 of 7)	exon (NM_009324, exon 6 of 7)	5356.0	NM_009324	21385.0	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	4.0	1.38	1.85	3.37	6.53	6.43	1.06	2.21	3.75
Merged-chr1-36462024-1	chr1	36461524	36462524	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9573.0	NM_033570	94220.0	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	1.72	3.69	8.32	5.4	3.73	4.82	8.45	6.19	5.62
Merged-chr16-32458180-1	chr16	32457680	32458680	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163160, intron 3 of 8)	intron (NM_001163160, intron 3 of 8)	26950.0	NM_001163160	13026.0	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	3.43	3.69	3.7	10.12	5.6	3.22	3.17	3.54	5.0
Merged-chr2-166592722-1	chr2	166592222	166593222	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177782, intron 17 of 39)	intron (NM_177782, intron 17 of 39)	28200.0	NR_152154	433503.0	Mm.491336	NR_152154		Gm29679	-	predicted gene, 29679	ncRNA	6.29	2.3	3.7	8.1	1.87	6.43	2.11	1.33	3.75
Merged-chr2-11490805-1	chr2	11490305	11491305	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133232, intron 3 of 14)	ID4|SINE|ID	11285.0	NM_001177754	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	22.31	15.21	39.77	14.84	23.33	16.08	28.52	23.43	17.49
Merged-chr3-122251172-1	chr3	122250672	122251672	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008129, intron 1 of 6)	intron (NM_008129, intron 1 of 6)	5615.0	NM_008129	14630.0	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	22.88	12.44	17.57	14.17	7.0	35.37	7.39	3.54	7.49
Merged-chrX-99689955-1	chrX	99689455	99690455	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-131114.0	NM_001081283	620592.0	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	3.43	7.83	3.7	13.49	4.67	2.41	5.28	11.5	5.62
Merged-chr17-29109572-1	chr17	29109072	29110072	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15803.0	NM_007669	12575.0	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	4.0	0.92	1.85	2.7	1.87	7.23	1.06	2.21	2.5
Merged-chr12-34663208-1	chr12	34662708	34663708	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	L1_Mus4|LINE|L1	-134319.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	16.02	15.67	14.8	14.84	10.73	4.02	10.56	11.94	19.98
Merged-chr11-116785042-1	chr11	116784542	116785542	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR24B_MM|LTR|ERV1	-9535.0	NM_011371	20445.0	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	67.5	68.2	54.57	73.54	45.72	61.89	5.28	3.1	2.5
Merged-chr17-34849796-1	chr17	34849296	34850296	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001045864)	promoter-TSS (NM_001045864)	408.0	NM_021337	108077.0	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	24.03	25.8	34.22	21.59	20.06	36.17	33.8	45.1	39.97
Merged-chr12-99627353-1	chr12	99626853	99627853	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045288, intron 1 of 1)	intron (NR_045288, intron 1 of 1)	621.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	152.74	157.59	107.29	151.81	189.4	114.94	190.11	247.17	115.54
Merged-chr7-80106232-1	chr7	80105732	80106732	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	9118.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	5.15	5.53	12.02	3.37	4.67	0.0	2.11	1.77	2.5
Merged-chr17-27553100-1	chr17	27552600	27553600	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M5|LINE|L1	-3474.0	NM_001166536	15361.0	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	17.73	12.44	7.4	14.17	7.0	8.04	11.62	3.98	12.49
Merged-chr2-76608652-1	chr2	76608152	76609152	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	39342.0	NM_011871	23992.0	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	6.29	2.3	5.55	3.37	3.27	4.82	2.11	1.77	0.0
Merged-chr13-58035651-1	chr13	58035151	58036151	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001195075, intron 8 of 16)	intron (NM_001195075, intron 8 of 16)	-12451.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	8.01	5.99	5.55	10.8	5.6	4.82	3.17	1.77	2.5
Merged-chr1-120510510-3	chr1	120510008	120511008	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5484.0	NM_010766	17167.0	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	10.87	8.29	3.7	7.42	6.53	7.23	13.73	8.4	8.12
Merged-chr10-94047266-1	chr10	94046766	94047766	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 2 of 20)	intron (NM_053072, intron 2 of 20)	11265.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.86	7.37	8.32	10.8	6.06	3.22	22.18	39.35	25.61
Merged-chr4-66858393-1	chr4	66857893	66858893	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30842.0	NM_021297	21898.0	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	12.01	3.23	3.7	3.37	4.67	0.0	2.11	3.54	3.75
Merged-chr12-99626468-1	chr12	99625968	99626968	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045288, intron 1 of 1)	PB1D10|SINE|Alu	1506.0	NR_045288	73457.0	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	22.88	17.05	16.65	6.75	8.4	15.27	7.39	19.9	9.99
Merged-chr8-119380810-1	chr8	119380310	119381310	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-14082.0	NM_019966	56690.0	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.0	1.84	0.0	2.7	2.8	0.0	4.22	0.88	6.25
Merged-chr10-93123350-1	chr10	93122850	93123850	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-37526.0	NM_146239	237459.0	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	9.72	5.53	17.57	7.42	7.0	4.02	34.85	22.99	20.61
Merged-chr1-136139460-1	chr1	136138960	136139960	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8070.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	97.25	109.21	89.72	99.86	76.04	95.65	140.47	194.11	97.43
Merged-chr10-10397025-1	chr10	10396525	10397525	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001127353, intron 20 of 36)	intron (NM_001127353, intron 20 of 36)	75289.0	NM_001127353	215772.0	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	24.03	17.97	11.1	24.96	16.33	14.47	27.46	33.6	43.09
Merged-chr2-48915991-1	chr2	48915491	48916491	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149356, intron 9 of 13)	ORR1C2|LTR|ERVL-MaLR	33276.0	NM_001177313	26428.0	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	5.15	3.69	3.7	6.07	2.8	3.22	6.34	4.86	6.87
Merged-chr12-39561155-1	chr12	39560655	39561655	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	476221.0	NM_007487	11861.0	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	5.72	0.92	1.85	0.67	3.73	1.61	2.11	3.54	3.12
Merged-chr11-89093287-1	chr11	89092787	89093787	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033266)	TTS (NM_001033266)	19446.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	111.55	146.99	91.57	95.81	80.71	106.1	215.46	178.19	86.81
Merged-chr5-36579197-1	chr5	36578697	36579697	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113362, intron 2 of 14)	MIR|SINE|MIR	3200.0	NM_133910	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	11.44	19.35	9.25	17.54	11.2	17.68	25.35	15.03	8.74
Merged-chr11-70528784-1	chr11	70528284	70529284	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008946)	TTS (NM_008946)	3427.0	NM_008946	19175.0	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	7.44	5.99	0.92	10.12	4.67	1.61	5.28	5.31	4.37
Merged-chr10-122715521-1	chr10	122715021	122716021	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	URR1B|DNA|hAT-Charlie	36206.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	2.86	7.83	16.65	10.8	6.53	10.45	7.39	6.19	13.74
Merged-chr11-103327147-1	chr11	103326647	103327647	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17555.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	5.15	4.15	0.0	8.1	2.8	3.22	3.17	1.33	1.25
Merged-chr3-152274102-1	chr3	152273602	152274602	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_174868, exon 16 of 16)	3' UTR (NM_174868, exon 16 of 16)	-7752.0	NM_199465	68810.0	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	1.14	2.76	0.0	8.1	4.2	4.82	1.06	5.75	3.75
Merged-chr7-67430210-1	chr7	67429710	67430710	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-57352.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	28.03	10.6	9.25	20.24	9.33	16.08	24.29	19.9	13.74
Merged-chr11-86756251-1	chr11	86755751	86756751	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	1316.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	204.22	214.73	126.72	232.1	187.07	147.9	317.91	347.99	118.04
Merged-chr6-114383259-1	chr6	114382759	114383759	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14677.0	NM_001317125	15465.0	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	13.16	5.99	5.55	6.75	1.4	1.61	5.28	2.21	0.0
Merged-chr4-141641810-1	chr4	141641310	141642310	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 4 of 18)	intron (NM_001347237, intron 4 of 18)	-17976.0	NM_001013780	384071.0	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	49.77	52.99	25.9	18.89	15.39	23.31	69.71	60.58	33.1
Merged-chr10-21997859-1	chr10	21997359	21998359	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011361, intron 9 of 11)	intron (NM_011361, intron 9 of 11)	3193.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	25.17	22.12	16.65	45.21	20.99	24.92	48.58	33.6	29.35
Merged-chr6-122631890-1	chr6	122631390	122632390	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5466.0	NM_139218	73708.0	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	7.44	1.84	13.87	5.4	5.13	10.45	12.67	7.52	14.99
Merged-chr11-51922491-1	chr11	51921991	51922991	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45140.0	NM_029976	52626.0	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	133.86	120.73	115.62	147.09	136.22	141.47	163.71	187.04	117.41
Merged-chr12-113217478-1	chr12	113216978	113217978	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31575.0	NM_153776	69195.0	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	4.58	2.3	9.25	6.75	0.93	1.61	1.06	1.77	1.87
Merged-chr8-123331596-2	chr8	123331081	123332081	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1132.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	5.15	1.38	1.85	4.05	1.87	3.22	2.11	1.33	3.75
Merged-chr8-36931826-1	chr8	36931326	36932326	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001194940, intron 2 of 17)	intron (NM_001194940, intron 2 of 17)	20616.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.15	9.22	7.4	8.77	9.8	4.82	5.28	11.94	3.75
Merged-chr4-28943651-1	chr4	28943151	28944151	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290434, intron 9 of 16)	intron (NM_001290434, intron 9 of 16)	-124428.0	NR_151693	102634169.0		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	5.72	3.69	3.7	3.37	5.13	4.82	5.28	4.86	9.99
Merged-chr2-21111630-1	chr2	21111130	21112130	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93735.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	10.87	4.15	9.25	10.12	16.33	12.06	5.28	6.19	5.62
Merged-chr9-24506682-1	chr9	24506182	24507182	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-3542.0	NM_172920	244745.0	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	14.3	29.03	28.67	10.8	11.2	22.51	21.12	16.8	22.48
Merged-chr1-48598215-1	chr1	48597715	48598715	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-646401.0	NR_151585	442837.0	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	2.29	2.76	0.0	2.7	7.0	1.61	4.22	3.1	5.0
Merged-chr1-121307309-1	chr1	121306809	121307809	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271532, intron 2 of 4)	intron (NM_001271532, intron 2 of 4)	20369.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	8.58	3.23	7.4	12.14	2.33	12.06	7.39	3.54	2.5
Merged-chr1-93757779-1	chr1	93757279	93758279	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174874, intron 1 of 12)	Lx9|LINE|L1	2746.0	NM_174874	66615.0	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	9.72	7.37	7.4	8.1	10.73	10.45	11.62	7.96	4.37
Merged-chr3-115799474-1	chr3	115798974	115799974	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84419.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.29	6.45	5.55	9.45	6.06	1.61	7.39	4.86	1.25
Merged-chr2-104546693-1	chr2	104546193	104547193	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9965.0	NR_136919	668733.0	Mm.461873	NR_136919		Gm13884	-	SWIM type zinc finger 7 associated protein 1 pseudogene	pseudo	18.31	11.06	11.1	18.89	6.06	2.41	26.4	10.17	16.86
Merged-chr19-7417300-1	chr19	7416800	7417800	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175381)	promoter-TSS (NM_175381)	-325.0	NM_175381	108899.0	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	6.29	0.46	1.85	0.67	0.93	4.82	3.17	1.33	1.25
Merged-chr3-146800664-1	chr3	146800164	146801164	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	MTD|LTR|ERVL-MaLR	12282.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	6.29	6.45	7.4	3.37	0.93	4.82	3.17	1.77	7.49
Merged-chr11-73326038-1	chr11	73325538	73326538	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1401.0	NM_023113	11484.0	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	252.85	264.49	99.89	263.14	280.84	172.01	199.62	219.76	115.54
Merged-chr4-135054610-1	chr4	135054110	135055110	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66035.0	NM_019732	12399.0	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	8.01	5.53	3.7	6.07	3.27	11.25	2.11	2.65	1.25
Merged-chr1-192752880-1	chr1	192752380	192753380	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144881, intron 2 of 11)	intron (NM_144881, intron 2 of 11)	18339.0	NM_144881	226861.0	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	60.64	69.58	61.97	19.57	17.73	15.27	61.26	47.75	36.22
Merged-chr15-62038599-1	chr15	62038099	62039099	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_132746)	promoter-TSS (NR_132746)	613.0	NR_003368	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	189.92	207.35	133.19	224.01	271.97	148.7	275.66	335.6	109.92
Merged-chr1-156537238-1	chr1	156536738	156537738	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-21549.0	NM_009595	11352.0	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	71.51	90.31	55.5	60.72	50.85	38.58	26.4	37.58	26.23
Merged-chr18-84806669-1	chr18	84806169	84807169	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3B|LINE|L1	-44669.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	20.02	23.04	27.75	21.59	13.53	15.27	16.9	15.92	18.11
Merged-chr11-83065904-1	chr11	83065404	83066404	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011408, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	792.0	NM_011408	20556.0	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	143.59	197.22	181.29	169.35	155.35	183.26	269.33	236.12	180.49
Merged-chr2-12881195-1	chr2	12880695	12881695	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42846.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	2.29	5.53	3.7	0.67	4.67	1.61	2.11	2.21	2.5
Merged-chr10-77565024-1	chr10	77564524	77565524	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008404, intron 15 of 15)	intron (NM_008404, intron 15 of 15)	-16631.0	NM_145925	108705.0	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540|PBF	pituitary tumor-transforming 1 interacting protein	protein-coding	16.02	19.35	24.97	14.17	7.0	13.66	29.57	22.55	16.86
Merged-chr4-47284253-1	chr4	47283753	47284753	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009928, intron 20 of 39)	intron (NM_009928, intron 20 of 39)	-68969.0	NM_001312868	21812.0	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.0	2.76	0.0	4.72	4.67	4.82	3.17	2.21	2.5
Merged-chr3-80079938-1	chr3	80079438	80080438	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	194008.0	NM_133187	68659.0	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	3.43	1.84	0.0	2.7	1.87	4.82	5.28	1.33	1.25
Merged-chr1-176853026-1	chr1	176852526	176853526	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357390, intron 8 of 18)	intron (NM_001357390, intron 8 of 18)	-16893.0	NR_037996	15365.0	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	18.31	16.13	9.25	20.92	16.33	14.47	10.56	14.59	13.12
Merged-chr10-99253579-1	chr10	99253079	99254079	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9652.0	NM_026268	67603.0	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	10.3	11.06	3.7	6.07	4.67	6.43	9.51	5.75	5.0
Merged-chr15-62392031-1	chr15	62391531	62392531	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-172580.0	NR_003523	67552.0	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	28.03	23.04	24.05	22.27	15.39	22.51	12.67	16.36	16.86
Merged-chr6-125403685-1	chr6	125403185	125404185	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23181.0	NM_198604	213522.0	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	28.6	23.96	24.97	32.39	14.0	35.37	16.9	10.17	14.36
Merged-chr5-64764643-2	chr5	64764140	64765140	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-38883.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	9.15	4.61	7.4	6.75	2.8	12.06	4.22	2.21	9.37
Merged-chr19-53579110-1	chr19	53578610	53579610	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21286.0	NM_007790	13006.0	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	8.58	2.76	0.0	8.1	2.33	1.61	4.22	3.54	1.25
Merged-chr16-90676786-1	chr16	90676286	90677286	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50585.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	25.74	25.34	21.27	35.09	36.39	29.74	25.35	20.34	11.87
Merged-chr3-52077774-2	chr3	52077280	52078280	+	576.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	27226.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	9.15	6.91	10.17	3.37	4.2	6.43	4.22	2.65	8.74
Merged-chr7-17051154-1	chr7	17050654	17051654	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001162950, exon 5 of 15)	exon (NM_001162950, exon 5 of 15)	5525.0	NM_016868	53417.0	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	1.72	0.46	0.0	2.02	0.93	0.0	2.11	0.0	2.5
Merged-chr10-53443624-1	chr10	53443124	53444124	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33742.0	NR_152767	102640074.0	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	3.43	1.38	10.17	8.1	5.6	13.66	5.28	2.21	2.5
Merged-chr13-54838703-1	chr13	54838203	54839203	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	49298.0	NM_028841	74257.0	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	6.29	8.75	3.7	4.05	1.4	4.82	11.62	2.21	8.12
Merged-chr5-113815978-1	chr5	113815478	113816478	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14523.0	NM_009151	20345.0	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	8.01	6.45	0.0	7.42	3.73	6.43	5.28	3.98	2.5
Merged-chr18-23886836-1	chr18	23886336	23887336	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162941, intron 7 of 7)	intron (NM_001162941, intron 7 of 7)	-67852.0	NM_027007	69256.0	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	14.87	22.12	7.4	56.68	42.92	57.07	20.07	14.59	19.36
Merged-chr13-92741054-2	chr13	92740560	92741560	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53758.0	NM_011582	21828.0	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	2.86	3.69	3.7	4.05	2.8	3.22	1.06	1.77	5.0
Merged-chr7-35546063-1	chr7	35545563	35546563	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20|DNA|hAT-Charlie	-8319.0	NM_028034	71981.0	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0.57	0.92	3.7	4.05	1.4	1.61	4.22	0.88	5.0
Merged-chr4-141978707-1	chr4	141978207	141979207	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177868, intron 5 of 31)	intron (NM_177868, intron 5 of 31)	-4285.0	NR_040672	545691.0	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	8.58	4.15	1.85	5.4	3.27	4.82	4.22	5.31	1.87
Merged-chr4-16170290-1	chr4	16169790	16170790	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045765, intron 1 of 6)	intron (NR_045765, intron 1 of 6)	6180.0	NR_045765	100415915.0	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	15.45	8.75	7.4	8.77	7.46	10.45	5.28	9.73	2.5
Merged-chr1-63130548-1	chr1	63130048	63131048	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045914, intron 1 of 3)	B3|SINE|B2	15808.0	NR_045914	100380944.0	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602	INO80 complex subunit D, opposite strand	ncRNA	5.72	11.06	11.1	10.12	7.93	8.04	10.56	13.27	6.25
Merged-chr15-101119663-1	chr15	101119163	101120163	+	576.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_144790, exon 4 of 4)	exon (NM_144790, exon 4 of 4)	3908.0	NM_001355656	208258.0	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	3.43	2.3	4.62	0.0	0.47	2.41	10.56	5.31	6.87
Merged-chr19-44407547-1	chr19	44407047	44408047	+	576.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009127, exon 1 of 6)	5' UTR (NM_009127, exon 1 of 6)	162.0	NM_009127	20249.0	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	13.16	12.44	24.05	14.17	18.66	26.53	35.91	26.97	6.25
Merged-chr12-86798985-2	chr12	86798468	86799468	+	575.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	64599.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	7.44	6.45	7.4	12.82	5.13	4.82	6.34	3.54	5.0
Merged-chr9-7833565-2	chr9	7833083	7834083	+	575.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001291503, exon 2 of 8)	exon (NM_001291503, exon 2 of 8)	3223.0	NM_001291503	11797.0	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	14.87	19.81	24.97	4.72	9.33	5.63	19.01	9.73	9.37
Merged-chr8-88621619-1	chr8	88621119	88622119	+	575.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14509.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	4.58	5.53	0.0	2.02	3.27	0.0	8.45	0.44	0.0
Merged-chr11-75325578-3	chr11	75325081	75326081	+	575.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026653, intron 5 of 16)	intron (NM_026653, intron 5 of 16)	22802.0	NM_001164223	68275.0	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	55.49	52.99	47.17	48.58	27.06	30.54	86.61	62.79	34.97
Merged-chr14-103343446-3	chr14	103342941	103343941	+	575.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207215, intron 1 of 84)	intron (NM_207215, intron 1 of 84)	3359.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	62.35	82.02	61.05	62.07	58.31	50.64	92.94	97.72	43.09
Merged-chr14-61770519-1	chr14	61770019	61771019	+	575.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-88146.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	10.87	5.53	0.0	10.12	6.53	8.04	2.11	3.54	0.0
Merged-chr18-36734454-2	chr18	36733955	36734955	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_028036)	promoter-TSS (NM_028036)	-615.0	NM_028036	71983.0	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	90.96	120.73	121.17	86.36	87.24	110.12	111.96	138.4	122.41
Merged-chr15-57919372-1	chr15	57918872	57919872	+	575.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356310, intron 2 of 19)	intron (NM_001356310, intron 2 of 19)	7173.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	14.3	24.88	17.57	13.49	18.19	19.29	32.74	24.32	18.11
Merged-chr12-35212875-1	chr12	35212375	35213375	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17978.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	3.43	5.99	4.62	8.1	4.67	12.06	4.22	2.65	6.25
Merged-chr12-111587602-2	chr12	111587106	111588106	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021516, intron 1 of 16)	MER20|DNA|hAT-Charlie	13096.0	NM_022801	17169.0	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	21.17	24.42	17.57	6.07	7.0	19.29	16.9	18.13	21.23
Merged-chr3-32737525-2	chr3	32737023	32738023	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029017)	promoter-TSS (NM_029017)	460.0	NM_025316	66046.0	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	57.21	62.67	59.2	47.9	68.11	75.56	74.99	57.92	31.23
Merged-chr7-110205063-2	chr7	110204569	110205569	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	-16634.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	17.73	17.05	22.2	18.89	15.39	28.13	10.56	26.09	24.98
Merged-chr8-123342459-2	chr8	123341958	123342958	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172287, intron 1 of 14)	intron (NM_172287, intron 1 of 14)	9745.0	NM_172287	234857.0	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire type actin nucleation factor 2	protein-coding	29.75	34.56	37.0	39.13	40.59	33.76	46.47	51.29	23.73
Merged-chr12-84100274-1	chr12	84099774	84100774	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172580)	promoter-TSS (NM_172580)	-380.0	NM_172580	217700.0	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	5.15	3.23	0.92	4.72	1.87	1.61	2.11	2.21	2.5
Merged-chr2-58180986-2	chr2	58180486	58181486	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17012.0	NR_045895	100042926.0	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	-	predicted gene 13546	ncRNA	5.72	5.07	3.7	4.72	0.47	6.43	3.17	1.77	0.0
Merged-chr17-83708017-2	chr17	83707544	83708544	+	575.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054082, intron 1 of 16)	B1F1|SINE|Alu	1881.0	NM_001171052	116871.0	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	98.97	146.07	112.84	80.29	105.43	89.22	109.84	189.25	148.01
Merged-chr8-122893639-1	chr8	122893139	122894139	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45265.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	7.44	4.15	7.4	12.14	4.67	6.43	6.34	2.21	9.37
Merged-chr14-26436494-1	chr14	26435994	26436994	+	575.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	B2_Mm2|SINE|B2	78947.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	12.01	25.8	13.87	22.94	14.46	17.68	22.18	13.71	11.87
Merged-chr5-146769791-1	chr5	146769291	146770291	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	25165.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	36.04	27.65	28.67	24.96	20.53	35.37	55.98	59.69	39.97
Merged-chr16-23311200-2	chr16	23310700	23311700	+	575.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252506, intron 1 of 6)	L1Md_F2|LINE|L1	20730.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.58	8.29	11.1	18.89	6.53	15.27	15.84	7.52	9.99
Merged-chr11-26585571-1	chr11	26585071	26586071	+	575.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027260, intron 2 of 12)	intron (NM_027260, intron 2 of 12)	8349.0	NM_027260	69922.0	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	125.85	143.76	122.09	123.47	116.63	83.59	72.88	82.69	47.46
Merged-chr4-137358470-1	chr4	137357970	137358970	+	575.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001243769)	promoter-TSS (NM_001243769)	-711.0	NM_001243769	12540.0	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	40.62	36.4	40.7	49.25	48.05	90.02	85.55	95.95	65.58
Merged-chr15-100226047-2	chr15	100225542	100226542	+	575.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	-1817.0	NM_007497	11908.0	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	22.31	31.79	34.22	18.89	14.46	45.82	26.4	22.99	14.99
Merged-chr18-12130313-2	chr18	12129825	12130825	+	575.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024182, intron 1 of 12)	intron (NM_024182, intron 1 of 12)	1475.0	NM_024182	66878.0	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	29.17	44.24	63.82	33.74	24.72	35.37	48.58	61.02	36.85
Merged-chr1-189887687-1	chr1	189887187	189888187	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026796, intron 7 of 11)	intron (NM_026796, intron 7 of 11)	34604.0	NM_026796	226830.0	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	2.86	0.46	0.0	1.35	4.2	1.61	1.06	1.33	3.75
Merged-chr14-13971827-1	chr14	13971327	13972327	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9975.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	6.29	5.53	6.47	8.77	6.53	1.61	4.22	7.07	8.12
Merged-chr19-55585716-1	chr19	55585216	55586216	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	116488.0	NR_045318	77594.0	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	225.39	222.56	170.19	220.63	220.19	166.38	203.84	216.66	131.78
Merged-chr3-159840955-1	chr3	159840455	159841455	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356350, intron 1 of 12)	intron (NM_001356350, intron 1 of 12)	1305.0	NM_001356350	68151.0	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|EVI|Gpr177	wntless WNT ligand secretion mediator	protein-coding	21.74	9.22	14.8	21.59	15.86	16.08	16.9	12.82	8.12
Merged-chr10-120698755-1	chr10	120698255	120699255	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66977.0	NR_038000	70874.0	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	9.72	6.45	16.65	7.42	5.13	1.61	11.62	6.63	7.49
Merged-chr13-108153145-1	chr13	108152645	108153645	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	5480.0	NM_001360140	75597.0	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	1.72	2.76	7.4	5.4	6.53	3.22	2.11	2.21	3.75
Merged-chr10-68063667-2	chr10	68063161	68064161	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	84091.0	NM_001359319	170799.0	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	32.04	47.0	25.9	39.81	40.59	16.08	15.84	14.15	5.62
Merged-chr10-81495906-1	chr10	81495406	81496406	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134009, intron 1 of 13)	intron (NM_134009, intron 1 of 13)	457.0	NM_134009	103425.0	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	41.76	30.87	31.45	57.35	43.39	38.58	47.53	42.89	27.48
Merged-chr7-126424482-1	chr7	126423982	126424982	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-4285.0	NM_030566	70314.0	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	11.44	11.98	37.0	14.17	11.66	27.33	15.84	16.8	13.74
Merged-chr4-129064707-1	chr4	129064207	129065207	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	B1F|SINE|Alu	6436.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	30.32	27.19	32.37	13.49	18.19	33.76	39.08	18.57	29.98
Merged-chr18-75377634-1	chr18	75377134	75378134	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042660, intron 3 of 3)	intron (NM_001042660, intron 3 of 3)	10269.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	8.58	11.06	5.55	7.42	8.86	12.06	17.96	13.27	0.62
Merged-chr8-84010039-1	chr8	84009539	84010539	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001291292)	TTS (NM_001291292)	1594.0	NR_035431	100316677.0		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	4.0	3.69	1.85	2.02	0.93	8.04	4.22	3.54	1.25
Merged-chr8-40133088-1	chr8	40132588	40133588	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	153865.0	NM_030610	80857.0	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	5.72	4.61	0.92	4.05	1.87	0.0	3.17	4.42	5.62
Merged-chr4-12460360-1	chr4	12459860	12460860	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-288345.0	NM_026558	68099.0	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	12.01	8.75	6.47	13.49	6.53	16.88	11.62	13.71	3.75
Merged-chr6-143661017-1	chr6	143660517	143661517	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19C|LTR|ERVK	-9729.0	NR_045732	73425.0	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	5.15	2.3	1.85	5.4	0.47	6.43	3.17	3.1	1.87
Merged-chr10-44348797-1	chr10	44348297	44349297	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358596, intron 6 of 6)	intron (NM_001358596, intron 6 of 6)	-10879.0	NR_035450	100316688.0		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	9.72	5.99	13.87	7.42	5.6	4.82	9.51	5.75	6.25
Merged-chr8-79373947-1	chr8	79373447	79374447	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	25521.0	NM_008539	17125.0	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	87.52	118.42	73.07	74.22	65.31	78.77	86.61	89.76	55.58
Merged-chr13-35940643-1	chr13	35940143	35941143	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27263.0	NM_029628	76487.0	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	25.74	31.79	49.95	14.84	17.26	25.72	12.67	13.71	9.99
Merged-chr3-19447841-1	chr3	19447341	19448341	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-60754.0	NM_001163536	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	1.14	5.53	5.55	0.0	5.13	4.02	2.11	3.98	1.25
Merged-chr11-116724258-1	chr11	116723758	116724758	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER12B|LTR|ERVK	-27909.0	NR_003364	193217.0	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	15.45	11.98	1.85	6.07	6.06	6.43	2.11	4.42	3.75
Merged-chr9-44537862-1	chr9	44537362	44538362	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11441.0	NM_007551	12145.0	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	4.0	3.23	9.25	12.14	7.93	5.63	8.45	4.86	5.0
Merged-chr14-67723418-1	chr14	67722918	67723918	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111028, intron 1 of 11)	intron (NM_001111028, intron 1 of 11)	7320.0	NM_001285933	105440.0	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	1.14	5.99	3.7	4.05	5.13	0.0	3.17	1.33	3.75
Merged-chr10-22302923-1	chr10	22302423	22303423	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3797.0	NR_015465	606736.0	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	196.21	245.14	174.82	186.22	144.62	196.93	113.01	121.6	76.19
Merged-chr15-79261537-1	chr15	79261037	79262037	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177580, exon 9 of 14)	exon (NM_177580, exon 9 of 14)	-6789.0	NM_020516	57274.0	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	1.14	0.46	0.0	1.35	0.47	3.22	5.28	0.44	1.87
Merged-chr8-122835199-2	chr8	122834689	122835689	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13185.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	5.15	2.3	0.0	4.05	1.4	0.0	5.28	0.0	6.25
Merged-chr19-37233897-1	chr19	37233397	37234397	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	26352.0	NM_001164336	69104.0	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	6.86	2.3	2.77	3.37	2.8	0.0	3.17	1.77	0.0
Merged-chr8-91060746-1	chr8	91060246	91061246	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-9311.0	NM_001282001	19651.0	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	5.72	8.29	10.17	8.77	8.86	8.04	9.51	3.98	11.24
Merged-chr1-64603555-1	chr1	64603055	64604055	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_009952, exon 9 of 9)	3' UTR (NM_009952, exon 9 of 9)	13613.0	NM_025964	67099.0	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	20.02	15.21	16.65	25.64	21.93	12.86	21.12	18.57	26.23
Merged-chr14-69813445-1	chr14	69812945	69813945	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7900.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	28.6	10.14	9.25	13.49	10.73	9.65	8.45	8.84	8.12
Merged-chr13-52576962-1	chr13	52576462	52577462	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3737.0	NR_046069	100040572.0	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	207.66	199.98	147.07	205.11	179.14	162.37	161.6	144.59	88.06
Merged-chr7-34378004-1	chr7	34377504	34378504	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025948, intron 1 of 10)	intron (NM_025948, intron 1 of 10)	11701.0	NM_001360654	67070.0	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral|mRAP55A	LSM14A mRNA processing body assembly factor	protein-coding	12.59	10.14	15.72	14.17	8.86	15.27	15.84	15.03	16.86
Merged-chr13-23585525-1	chr13	23585025	23586025	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001290530)	TTS (NM_001290530)	445.0	NM_001290530	319179.0	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	254.56	273.71	162.79	201.07	194.07	143.07	170.05	214.01	165.5
Merged-chr17-71185445-1	chr17	71184945	71185945	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	1467.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	19.45	34.1	21.27	34.41	24.26	32.15	33.8	26.97	24.98
Merged-chr17-45583786-1	chr17	45583286	45584286	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	8607.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	163.61	177.86	127.64	139.67	139.02	112.53	189.06	292.71	110.54
Merged-chr4-46374561-1	chr4	46374061	46375061	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	14862.0	NM_029086	74753.0	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	6.29	11.06	2.77	17.54	9.33	8.84	11.62	6.63	6.25
Merged-chr13-48540648-1	chr13	48540148	48541148	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2376.0	NR_029725	387244.0		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	14.3	16.59	11.1	11.47	7.93	16.08	16.9	16.8	11.24
Merged-chr18-25168533-1	chr18	25168033	25169033	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001033532)	promoter-TSS (NM_001033532)	344.0	NM_001142698	66648.0	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	46.91	47.46	79.55	35.09	34.52	60.28	47.53	39.8	44.34
Merged-chr1-166171856-1	chr1	166171356	166172356	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	41635.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	12.01	12.9	6.47	27.66	7.93	0.0	9.51	3.54	3.75
Merged-chr4-39276624-1	chr4	39276124	39277124	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-173669.0	NM_001081095	75471.0	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.57	0.46	0.92	0.0	3.73	0.0	3.17	0.88	2.5
Merged-chr1-131438351-1	chr1	131437851	131438851	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	89010.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	94.39	90.77	48.1	107.28	53.65	55.46	77.1	99.05	53.71
Merged-chr6-113981142-1	chr6	113980642	113981642	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009723, intron 1 of 21)	RSINE1|SINE|B4	-46461.0	NM_001347365	11941.0	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	5.15	2.3	3.7	0.67	1.4	1.61	4.22	2.65	0.0
Merged-chr4-95045358-1	chr4	95044858	95045858	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6864.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	4.0	3.23	1.85	1.35	0.93	1.61	1.06	1.77	1.25
Merged-chr2-34752449-1	chr2	34751949	34752949	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151469, intron 2 of 26)	intron (NR_151469, intron 2 of 26)	2783.0	NM_001356441	66691.0	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	25.74	33.18	34.22	25.64	27.99	20.9	26.4	19.9	18.74
Merged-chrX-140664707-1	chrX	140664207	140665207	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001358366)	promoter-TSS (NM_001358366)	195.0	NM_011845	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	5.72	3.23	1.85	14.84	3.73	3.22	13.73	5.31	1.25
Merged-chr11-109370173-1	chr11	109369673	109370673	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010303, intron 2 of 3)	intron (NM_010303, intron 2 of 3)	-6519.0	NR_038097	100036768.0	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	-	predicted gene 11696	ncRNA	145.87	141.46	111.92	170.03	144.62	131.02	162.65	191.9	74.94
Merged-chr6-124321977-1	chr6	124321477	124322477	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 11 of 16)	intron (NM_001170395, intron 11 of 16)	17326.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	65.79	101.83	64.75	68.82	61.58	52.25	34.85	43.77	46.84
Merged-chr12-102440848-1	chr12	102440348	102441348	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1035.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	125.85	84.32	80.47	101.21	64.84	75.56	166.88	119.83	81.81
Merged-chr15-66084044-1	chr15	66083544	66084544	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152923, intron 1 of 14)	intron (NM_152923, intron 1 of 14)	-107240.0	NM_001145096	654498.0	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	4.58	7.83	3.7	2.7	7.93	14.47	5.28	3.54	6.25
Merged-chr1-34005319-1	chr1	34004819	34005819	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276764, intron 3 of 102)	intron (NM_001276764, intron 3 of 102)	-6506.0	NM_133833	13518.0	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	37.76	50.23	35.15	24.29	22.86	28.13	30.63	26.53	11.24
Merged-chr10-13823919-1	chr10	13823419	13824419	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 2 of 5)	intron (NM_025446, intron 2 of 5)	45038.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	66.36	122.57	75.85	76.92	92.84	75.56	74.99	84.01	40.59
Merged-chr1-132384834-1	chr1	132384334	132385334	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	5484.0	NM_001311107	68875.0	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	22.31	35.02	16.65	15.52	18.66	25.72	14.79	16.36	16.86
Merged-chr2-89135571-1	chr2	89135071	89136071	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx3C|LINE|L1	-9842.0	NM_001011860	258177.0	Mm.377369	NM_001011860	ENSMUSG00000075101	Olfr1222	MOR233-14	olfactory receptor 1222	protein-coding	2.86	2.76	3.7	4.72	2.33	0.0	1.06	3.1	1.87
Merged-chr9-35026984-1	chr9	35026484	35027484	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190912, intron 12 of 15)	intron (NM_001190912, intron 12 of 15)	-89744.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.0	5.07	8.32	8.77	4.2	4.82	6.34	0.0	6.25
Merged-chr7-16264113-1	chr7	16263613	16264613	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4573.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	17.73	17.05	7.4	14.17	7.0	16.88	9.51	13.27	8.74
Merged-chr17-5627959-1	chr17	5627459	5628459	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	135359.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	13.73	14.75	21.27	17.54	14.93	15.27	21.12	9.29	19.36
Merged-chr1-87174455-1	chr1	87173955	87174955	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8859.0	NM_027084	69453.0	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	2.86	3.23	0.0	4.72	1.4	0.8	0.0	1.33	0.0
Merged-chr6-16897145-1	chr6	16896645	16897645	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031198, intron 1 of 6)	intron (NM_031198, intron 1 of 6)	1296.0	NM_031198	21426.0	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	98.39	163.58	51.8	88.39	107.76	69.13	107.73	99.05	60.58
Merged-chr5-120779806-1	chr5	120779306	120780306	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2147.0	NM_145226	246727.0	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	28.6	25.8	40.7	27.66	20.99	40.19	34.85	21.67	24.36
Merged-chr12-52422882-1	chr12	52422382	52423382	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57727.0	NR_136881	102638611.0	Mm.363799	NR_136881	ENSMUSG00000111982	Gm35135	-	predicted gene, 35135	ncRNA	6.29	5.99	5.55	6.07	6.06	7.23	5.28	3.98	1.25
Merged-chr18-77775120-1	chr18	77774620	77775620	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007505, intron 1 of 11)	intron (NM_007505, intron 1 of 11)	-1235.0	NM_001357531	225745.0	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	30.89	39.63	25.9	27.66	39.19	18.49	33.8	27.86	17.49
Merged-chr3-121844812-1	chr3	121844312	121845312	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29510.0	NM_008991	19299.0	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	4.58	7.37	19.42	4.72	5.13	4.82	7.39	11.05	11.24
Merged-chr9-103109226-1	chr9	103108726	103109726	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2848.0	NM_173781	270192.0	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	1.14	1.84	12.02	1.35	0.93	5.63	76.05	72.07	92.43
Merged-chr2-102863791-1	chr2	102863291	102864291	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039150, intron 2 of 13)	intron (NM_001039150, intron 2 of 13)	37874.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.01	6.91	7.4	10.12	13.53	20.09	8.45	7.52	14.99
Merged-chr11-120886671-1	chr11	120886171	120887171	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027745, intron 10 of 18)	intron (NM_027745, intron 10 of 18)	46201.0	NM_027745	71276.0	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	8.01	4.61	5.55	6.75	3.73	4.02	1.06	4.42	8.12
Merged-chr11-105180840-1	chr11	105180340	105181340	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001294334)	promoter-TSS (NM_001294334)	593.0	NR_027956	73431.0	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	92.67	96.3	83.25	87.71	54.58	103.69	77.1	50.41	40.59
Merged-chr5-76189978-1	chr5	76189478	76190478	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011626, intron 1 of 5)	intron (NM_011626, intron 1 of 5)	6098.0	NM_011626	21982.0	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	7.44	6.45	16.65	9.45	11.2	8.84	5.28	3.1	6.25
Merged-chr16-92824190-1	chr16	92823690	92824690	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	1884.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	62.35	42.85	21.27	85.69	41.99	44.21	73.93	38.03	24.98
Merged-chr19-46040477-1	chr19	46039977	46040977	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010697)	promoter-TSS (NM_010697)	-856.0	NM_010697	16825.0	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	17.73	21.2	44.4	14.17	19.59	34.56	21.12	33.6	33.1
Merged-chr11-5060023-1	chr11	5059523	5060523	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001190408)	TTS (NM_001190408)	1895.0	NM_145216	75668.0	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	1.14	0.0	0.0	1.35	0.47	6.43	1.06	0.0	6.25
Merged-chr19-42100585-1	chr19	42100085	42101085	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	10150.0	NM_145501	84095.0	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	65.21	39.17	43.47	35.09	24.72	34.56	13.73	3.98	7.49
Merged-chr13-73160522-1	chr13	73160022	73161022	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	68578.0	NR_126459	75361.0	Mm.385732	NR_126459		4930555K05Rik	-	RIKEN cDNA 4930555K05 gene	ncRNA	2.29	0.46	0.0	2.02	3.73	4.82	1.06	1.77	3.12
Merged-chr14-33214813-1	chr14	33214313	33215313	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2010.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	14.87	5.99	11.1	16.87	10.26	12.06	3.17	3.54	8.74
Merged-chr6-55511803-1	chr6	55511303	55512303	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	59825.0	NM_007407	11517.0	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	1.72	0.92	3.7	2.7	2.33	3.22	3.17	2.21	1.25
Merged-chr11-44543648-1	chr11	44543148	44544148	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166553, intron 4 of 5)	intron (NM_001166553, intron 4 of 5)	24271.0	NM_001166553	74315.0	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	9.15	12.44	33.3	18.22	5.6	20.09	17.96	26.97	28.73
Merged-chr7-49064919-1	chr7	49064419	49065419	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	97239.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	4.0	5.53	7.4	2.7	1.4	3.22	8.45	4.42	5.0
Merged-chr7-46607480-1	chr7	46606980	46607980	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	32327.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	14.87	17.97	12.02	33.06	25.66	19.29	29.57	25.65	11.87
Merged-chr3-75517877-1	chr3	75517377	75518377	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019745, intron 7 of 7)	intron (NM_019745, intron 7 of 7)	38975.0	NM_019745	56426.0	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	7.44	5.53	0.0	2.7	2.33	3.22	2.11	3.1	5.0
Merged-chr4-120845224-1	chr4	120844724	120845724	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9575.0	NM_182929	242662.0	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	9.72	0.92	0.0	5.4	6.06	8.04	0.0	3.54	5.0
Merged-chrX-167225971-1	chrX	167225471	167226471	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-16753.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	14.3	8.75	11.1	6.07	4.67	4.82	6.34	1.77	8.12
Merged-chr7-64217640-1	chr7	64217140	64218140	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018752, exon 11 of 14)	exon (NM_018752, exon 11 of 14)	11834.0	NR_029805	387207.0		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	3.43	1.38	1.85	0.0	3.73	8.04	6.34	2.65	2.5
Merged-chr8-70647534-1	chr8	70647034	70648034	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_023217, exon 5 of 5)	3' UTR (NM_023217, exon 5 of 5)	12204.0	NM_023217	66522.0	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	68.07	60.82	42.55	20.92	7.93	8.84	34.85	49.08	27.48
Merged-chr12-52503243-1	chr12	52502743	52503743	+	575.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12834.0	NM_009706	11855.0	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	43.48	54.37	50.87	41.83	26.12	28.13	58.09	55.27	43.09
Merged-chr19-55257772-1	chr19	55257272	55258272	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	4403.0	NM_027976	433256.0	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	9.15	2.76	5.55	6.75	2.33	3.22	2.11	8.4	8.12
Merged-chr1-153443229-1	chr1	153442729	153443729	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033162, intron 6 of 9)	RLTR40|LTR|ERVK	18020.0	NM_001033162	71836.0	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	6.29	5.53	5.55	6.75	5.6	12.06	8.45	3.54	5.0
Merged-chr9-78358334-1	chr9	78357834	78358834	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9865.0	NM_025274	434423.0	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	2.29	2.76	5.55	1.35	1.87	3.22	0.0	1.77	1.25
Merged-chr3-108719529-1	chr3	108719029	108720029	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	2770.0	NM_029522	76123.0	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	6.29	1.38	1.85	2.02	4.67	4.82	7.39	1.77	3.75
Merged-chr18-69084307-1	chr18	69083807	69084807	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62034.0	NR_105780	102465187.0		NR_105780	ENSMUSG00000098366	Mir145b	Gm27644|mmu-mir-145b	microRNA 145b	ncRNA	7.44	7.37	0.0	9.45	8.86	4.82	3.17	3.98	1.87
Merged-chr6-87451259-1	chr6	87450759	87451759	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22265.0	NM_009756	12154.0	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	b2b2711Clo	bone morphogenetic protein 10	protein-coding	4.58	1.84	7.4	4.05	3.73	6.43	3.17	0.88	3.12
Merged-chr2-166957058-1	chr2	166956558	166957558	+	575.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_111895, intron 3 of 11)	intron (NR_111895, intron 3 of 11)	7659.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	12.01	8.29	7.4	11.47	2.8	4.82	5.28	3.1	3.75
Merged-chr7-90212336-1	chr7	90211836	90212836	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53096.0	NM_029256	75338.0	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	6.86	11.06	3.7	10.12	9.8	4.82	9.51	8.84	11.24
Merged-chr4-155611487-1	chr4	155610987	155611987	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177186, intron 3 of 8)	intron (NM_177186, intron 3 of 8)	10071.0	NM_177186	320541.0	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	14.3	8.29	12.02	10.8	10.73	8.84	11.62	4.42	14.99
Merged-chr1-106101207-1	chr1	106100707	106101707	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70317.0	NR_040630	626049.0	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	9.15	10.14	24.05	9.45	6.06	3.22	12.67	8.4	5.0
Merged-chr9-65571182-1	chr9	65570682	65571682	+	575.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153119, intron 2 of 5)	B4|SINE|B4	8905.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	50.34	49.3	44.4	53.98	39.19	95.65	50.7	55.71	61.2
Merged-chr2-167279216-2	chr2	167278734	167279734	+	574.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-38697.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	7.44	2.76	9.25	8.1	1.4	1.61	3.17	2.65	3.12
Merged-chr17-31557526-1	chr17	31557026	31558026	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7247.0	NR_027493	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	13.16	29.03	29.6	29.69	34.99	42.6	42.25	30.95	16.86
Merged-chr10-68268807-1	chr10	68268307	68269307	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	9919.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	16.59	26.73	18.5	18.89	21.46	32.96	24.29	10.61	9.99
Merged-chr12-85385043-1	chr12	85384543	85385543	+	574.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10326.0	NM_026775	68581.0	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	225.96	153.44	123.94	187.57	138.55	200.95	126.74	156.53	130.53
Merged-chr1-39917666-2	chr1	39917168	39918168	+	574.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252202, intron 2 of 29)	L1MEc|LINE|L1	16755.0	NM_008696	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	11.44	22.58	23.12	18.89	12.6	9.65	28.52	20.34	22.48
Merged-chr11-43568468-2	chr11	43567976	43568976	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	33086.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	4.0	2.76	11.1	2.02	3.73	0.0	1.06	1.33	1.25
Merged-chr10-63024782-1	chr10	63024282	63025282	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001079824)	promoter-TSS (NM_001079824)	270.0	NM_026085	67307.0	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	60.64	52.07	65.67	46.56	53.18	62.7	74.99	67.65	36.22
Merged-chr11-83463060-1	chr11	83462560	83463560	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172797)	promoter-TSS (NM_172797)	-20.0	NM_080453	118453.0	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	6.29	2.3	5.55	4.72	3.73	8.04	8.45	1.77	5.0
Merged-chr11-77459523-1	chr11	77459023	77460023	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-4390.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	2.29	2.76	2.77	6.07	1.87	2.41	3.17	2.21	5.0
Merged-chrX-73568541-2	chrX	73568036	73569036	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177236, intron 20 of 20)	MER58A|DNA|hAT-Charlie	65450.0	NM_177236	320707.0	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	8.01	6.45	3.7	4.05	2.33	3.22	8.45	3.98	8.74
Merged-chr6-87553896-1	chr6	87553396	87554396	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20637.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	3.43	4.61	3.7	10.12	4.67	11.25	11.62	5.75	6.25
Merged-chr2-152293289-1	chr2	152292789	152293789	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_024196)	promoter-TSS (NM_024196)	-583.0	NM_024196	67231.0	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	18.88	23.04	17.57	17.54	13.06	16.88	25.35	19.46	15.61
Merged-chr10-80876199-2	chr10	80875697	80876697	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3619.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	10.3	2.3	3.7	3.37	0.93	3.22	1.06	1.77	2.5
Merged-chr7-28601222-2	chr7	28600723	28601723	+	574.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3039.0	NM_027470	70584.0	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 (RAC1) activated kinase 4	protein-coding	8.58	6.45	3.7	6.07	5.13	11.25	1.06	2.65	3.75
Merged-chr17-57167226-1	chr17	57166726	57167726	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17449.0	NM_011617	21948.0	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	6.29	1.84	1.85	3.37	2.33	3.22	4.22	2.21	1.25
Merged-chr8-106307790-2	chr8	106307293	106308293	+	574.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021491, intron 1 of 8)	intron (NM_021491, intron 1 of 8)	25564.0	NR_126090	75044.0	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	2.29	4.61	9.25	2.02	5.13	1.61	0.0	1.33	0.0
Merged-chr13-55469373-1	chr13	55468873	55469873	+	574.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001030296, intron 1 of 2)	intron (NM_001030296, intron 1 of 2)	5106.0	NM_001030296	432763.0	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	5.15	3.69	0.0	4.05	1.87	0.0	4.22	2.21	1.25
Merged-chr12-99902204-1	chr12	99901704	99902704	+	574.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028354, intron 5 of 15)	(TTTTG)n|Simple_repeat|Simple_repeat	17689.0	NM_028354	104884.0	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	131.0	121.19	73.07	138.32	141.82	102.88	149.98	157.85	76.82
Merged-chr18-54902020-1	chr18	54901520	54902520	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360787, intron 2 of 8)	intron (NM_001360787, intron 2 of 8)	88160.0	NM_175751	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	63.5	107.36	66.6	62.07	62.98	69.93	97.17	114.08	68.7
Merged-chr14-25517362-1	chr14	25516862	25517862	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183208, intron 2 of 23)	intron (NM_183208, intron 2 of 23)	-17077.0	NR_037236	100526533.0		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	9.15	5.99	10.17	20.24	14.0	10.45	8.45	3.98	3.75
Merged-chr6-4544758-1	chr6	4544258	4545258	+	574.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39140.0	NM_007743	12843.0	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	4.58	1.38	1.85	0.0	2.33	1.61	1.06	3.54	3.12
Merged-chr4-150176700-2	chr4	150176203	150177203	+	574.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	24432.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	1.14	0.92	1.85	2.02	1.4	0.0	4.22	1.33	2.5
Merged-chr5-135544601-2	chr5	135544098	135545098	+	574.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	524.0	NM_146001	215114.0	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	16.02	10.6	6.47	18.89	28.46	17.68	26.4	22.11	13.74
Merged-chr5-64265361-1	chr5	64264861	64265861	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	35004.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	8.01	5.99	7.4	9.45	7.93	10.45	22.18	8.84	11.87
Merged-chr11-104467053-1	chr11	104466553	104467553	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359634, intron 2 of 14)	intron (NM_001359634, intron 2 of 14)	1808.0	NM_001359634	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	6.29	1.84	10.17	6.07	4.67	6.43	6.34	1.77	0.0
Merged-chr2-21200151-1	chr2	21199651	21200651	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027728, intron 1 of 4)	intron (NM_027728, intron 1 of 4)	5214.0	NM_027728	71233.0	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.15	6.45	1.85	2.7	4.2	3.22	6.34	9.73	3.75
Merged-chr19-36818349-1	chr19	36817849	36818849	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-15883.0	NM_001163635	74493.0	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	25.74	17.51	7.4	43.18	33.59	20.9	63.37	40.68	22.48
Merged-chr13-112757056-1	chr13	112756556	112757556	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43721.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	11.44	14.28	5.55	11.47	6.06	16.08	9.51	7.52	2.5
Merged-chr5-107611439-1	chr5	107610939	107611939	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359917, intron 6 of 12)	intron (NM_001359917, intron 6 of 12)	13478.0	NM_001359916	231571.0	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	10.3	10.6	7.4	13.49	8.86	3.22	9.51	10.17	5.0
Merged-chr6-43384936-1	chr6	43384436	43385436	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013861, intron 8 of 8)	intron (NM_013861, intron 8 of 8)	-57493.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	19.45	17.97	18.5	21.59	21.46	22.51	10.56	12.38	6.25
Merged-chr14-12289863-1	chr14	12289363	12290363	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001284385, intron 3 of 4)	intron (NM_001284385, intron 3 of 4)	5660.0	NM_001284386	218734.0	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	8.01	11.52	7.4	10.8	2.8	14.47	14.79	14.59	5.0
Merged-chr16-43950157-1	chr16	43949657	43950657	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027801, intron 12 of 15)	L1M2|LINE|L1	28893.0	NM_001007460	332175.0	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	37.18	46.08	29.6	31.71	24.26	49.03	36.97	21.22	24.98
Merged-chr9-99096835-1	chr9	99096335	99097335	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 4 of 23)	intron (NM_029094, intron 4 of 23)	43376.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	5.15	7.37	3.7	7.42	1.87	10.45	6.34	7.07	8.74
Merged-chr5-142319535-1	chr5	142319035	142320035	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-81962.0	NM_199068	17425.0	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	7.44	2.3	3.7	6.07	0.93	4.02	4.22	2.65	4.37
Merged-chr2-131820261-1	chr2	131819761	131820761	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	27395.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	3.43	3.23	3.7	5.4	3.27	3.22	3.17	3.1	2.5
Merged-chr1-74393264-1	chr1	74392764	74393764	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153088, intron 1 of 6)	intron (NM_153088, intron 1 of 6)	-1046.0	NR_029743	387219.0		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	32.04	45.16	36.07	18.89	33.59	30.54	41.19	42.45	34.35
Merged-chr5-23851401-1	chr5	23850901	23851901	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_028536)	promoter-TSS (NR_028536)	804.0	NR_045040	67194.0	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	66.36	68.2	51.8	39.13	31.26	21.7	68.65	77.82	45.59
Merged-chr10-59952558-1	chr10	59952058	59953058	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029083)	promoter-TSS (NM_029083)	-788.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	24.6	35.48	32.37	37.11	39.65	38.58	29.57	20.78	28.1
Merged-chr14-26438412-1	chr14	26437912	26438912	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310445, intron 16 of 22)	intron (NM_001310445, intron 16 of 22)	80865.0	NR_038005	71106.0	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	50.34	57.14	54.57	62.07	49.92	48.23	41.19	56.16	34.97
Merged-chr9-118726700-2	chr9	118726212	118727212	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113514, intron 1 of 13)	MIRb|SINE|MIR	15020.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	9.72	8.75	9.25	10.12	9.33	16.08	9.51	4.42	18.74
Merged-chr7-66427579-1	chr7	66427079	66428079	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_053080)	promoter-TSS (NM_053080)	-102.0	NM_053080	56847.0	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	4.0	1.38	1.85	3.37	0.47	0.0	3.17	1.33	0.62
Merged-chr15-44618204-1	chr15	44617704	44618704	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-1023.0	NM_001357690	55960.0	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	22.88	33.18	8.32	31.04	31.26	36.17	54.92	49.08	26.23
Merged-chr8-22048307-1	chr8	22047807	22048807	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007511, intron 1 of 20)	intron (NM_007511, intron 1 of 20)	11767.0	NM_007511	11979.0	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	2.86	0.46	0.0	2.7	1.4	0.0	0.0	1.33	1.25
Merged-chr9-7240123-1	chr9	7239623	7240623	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32391.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	6.29	2.76	1.85	3.37	3.27	2.41	3.17	1.77	0.0
Merged-chr18-31816926-1	chr18	31816426	31817426	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028866, intron 1 of 21)	B1_Mur2|SINE|Alu	12869.0	NM_001170966	74320.0	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	21.17	19.35	33.3	10.8	7.0	8.04	8.45	5.75	10.62
Merged-chr16-93615637-1	chr16	93615137	93616137	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7800.0	NM_007620	12408.0	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	3.43	3.23	2.77	0.0	4.67	2.41	4.22	0.44	1.25
Merged-chr18-4255692-1	chr18	4255192	4256192	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89860.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	13.73	11.52	6.47	16.19	11.2	23.31	12.67	10.61	13.12
Merged-chr13-91682951-1	chr13	91682451	91683451	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 9 of 15)	intron (NM_001360776, intron 9 of 15)	-58570.0	NM_028790	74156.0	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	4.0	3.69	3.7	6.75	7.0	4.82	6.34	2.21	3.75
Merged-chr15-79440506-1	chr15	79440006	79441006	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359863, intron 1 of 10)	intron (NM_001359863, intron 1 of 10)	1312.0	NM_001289899	27373.0	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	18.88	12.9	1.85	16.19	11.2	16.08	12.67	7.96	2.5
Merged-chr11-77214926-1	chr11	77214426	77215426	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1499.0	NM_177710	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	7.44	9.22	5.55	10.8	8.86	8.04	6.34	10.61	15.61
Merged-chr16-33166492-1	chr16	33165992	33166992	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-18579.0	NM_176840	106326.0	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	7.44	3.69	0.0	2.7	1.4	1.61	7.39	1.77	0.0
Merged-chr6-5102523-1	chr6	5102023	5103023	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 7 of 15)	intron (NM_181595, intron 7 of 15)	91423.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	10.3	5.07	9.25	12.14	4.67	9.65	6.34	9.73	21.23
Merged-chr16-43377072-1	chr16	43376572	43377572	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	43124.0	NR_046026	626693.0	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	7.44	5.53	7.4	12.14	6.06	4.82	11.62	7.07	14.99
Merged-chr11-87771137-1	chr11	87770637	87771637	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172449, intron 14 of 31)	intron (NM_172449, intron 14 of 31)	10596.0	NM_172449	207777.0	Mm.342019	NM_172449	ENSMUSG00000034156	Tspoap1	Bzrap1|D230016K05|PRAX-1|mKIAA0612	TSPO associated protein 1	protein-coding	3.43	1.84	3.7	2.02	0.93	4.82	1.06	0.44	1.25
Merged-chr5-147725791-2	chr5	147725294	147726294	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_010228, exon 1 of 30)	5' UTR (NM_010228, exon 1 of 30)	194.0	NM_010228	14254.0	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	2.29	3.69	11.1	2.02	2.33	6.43	4.22	1.77	0.0
Merged-chr6-97800118-1	chr6	97799618	97800618	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-6940.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	6.86	6.91	4.62	6.07	7.93	4.82	6.34	5.31	6.87
Merged-chr2-148673424-1	chr2	148672924	148673924	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019761, intron 1 of 1)	intron (NM_019761, intron 1 of 1)	783.0	NM_001110159	56488.0	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	13.73	14.75	29.6	8.1	7.46	12.86	26.4	20.78	8.74
Merged-chr9-44420417-2	chr9	44419962	44420962	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12E|LTR|ERVK	-2393.0	NM_201372	382073.0	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	8.58	10.14	5.55	8.77	10.73	6.43	14.79	8.84	5.0
Merged-chr7-28803400-1	chr7	28802900	28803900	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-7490.0	NM_177301	15388.0	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	10.87	9.22	21.27	14.84	8.4	21.7	11.62	18.13	11.87
Merged-chr18-36765373-1	chr18	36764873	36765873	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_173383, exon 3 of 4)	exon (NM_173383, exon 3 of 4)	841.0	NM_173383	213236.0	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	3.43	1.84	2.77	4.72	6.06	8.04	4.22	0.88	1.87
Merged-chr5-92028900-1	chr5	92028400	92029400	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276315, intron 6 of 12)	B4|SINE|B4	13796.0	NM_001276315	53886.0	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	2.29	1.38	1.85	6.07	4.67	6.43	5.28	1.33	3.12
Merged-chr11-86117710-1	chr11	86117210	86118210	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178309, intron 14 of 19)	intron (NM_178309, intron 14 of 19)	83483.0	NM_178309	237911.0	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	7.44	12.9	3.7	7.42	5.13	12.86	11.62	3.54	5.62
Merged-chr4-138062312-1	chr4	138061812	138062812	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001256195, intron 4 of 34)	ORR1C2|LTR|ERVL-MaLR	64487.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	29.17	13.82	9.25	7.42	8.86	14.47	19.01	6.63	9.37
Merged-chr11-3104629-1	chr11	3104129	3105129	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GSAT_MM|Satellite|Satellite	-19392.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	7.44	20.27	23.12	6.75	26.12	25.72	39.08	36.7	40.59
Merged-chr3-87816749-1	chr3	87816249	87817249	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011832)	TTS (NM_011832)	19798.0	NM_011832	23920.0	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	5.72	0.92	1.85	0.67	0.93	0.0	2.11	1.33	2.5
Merged-chr4-145156146-1	chr4	145155646	145156646	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001276502, exon 18 of 69)	exon (NM_001276502, exon 18 of 69)	34520.0	NM_001276502	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	2.29	4.61	1.85	2.7	2.33	0.0	4.22	3.1	2.5
Merged-chr6-30318601-1	chr6	30318101	30319101	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-14062.0	NM_001169576	22214.0	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	8.58	2.3	3.7	10.12	3.27	3.22	4.22	3.1	0.0
Merged-chr6-82051797-1	chr6	82051297	82052297	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145570, intron 1 of 2)	intron (NM_145570, intron 1 of 2)	10169.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.29	2.76	0.0	9.45	9.33	3.22	1.06	4.42	3.12
Merged-chr19-56254800-2	chr19	56254294	56255294	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33118.0	NM_001329936	226243.0	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	14.87	23.04	39.77	10.12	9.33	14.47	21.12	22.99	21.23
Merged-chr2-165403017-1	chr2	165402517	165403517	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2623.0	NM_029021	74614.0	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	81.8	45.16	44.4	56.0	46.18	85.2	38.02	21.22	18.74
Merged-chr10-8740470-1	chr10	8739970	8740970	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175155, intron 14 of 19)	intron (NM_175155, intron 14 of 19)	145600.0	NM_175155	70097.0	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	8.01	10.14	21.27	6.07	4.67	17.68	13.73	9.29	9.99
Merged-chr13-90967683-1	chr13	90967183	90968183	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	44561.0	NM_024175	66475.0	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.0	2.3	3.7	2.02	1.87	0.0	4.22	0.88	2.5
Merged-chr7-141464775-1	chr7	141464275	141465275	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_152220)	promoter-TSS (NR_152220)	-871.0	NR_152220	100126795.0	Mm.386851	NR_152219	ENSMUSG00000073787	Gm10575	-	predicted gene 10575	ncRNA	9.72	3.23	7.4	13.49	1.87	19.29	4.22	0.88	3.75
Merged-chr9-63738786-1	chr9	63738286	63739286	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016769, intron 1 of 8)	intron (NM_016769, intron 1 of 8)	19208.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	34.9	32.25	16.65	64.1	31.26	39.39	36.97	33.6	18.74
Merged-chr1-33863394-1	chr1	33862894	33863894	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177235, intron 5 of 6)	intron (NM_177235, intron 5 of 6)	-24480.0	NM_001161816	433287.0	Mm.383632	NM_001161816		Gm15455	AA692849	predicted gene 15455	protein-coding	14.3	11.98	11.1	6.75	7.93	11.25	9.51	9.29	9.99
Merged-chr11-121800118-1	chr11	121799618	121800618	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-30100.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	6.29	3.23	0.92	9.45	7.0	0.0	6.34	6.19	6.25
Merged-chr1-140204043-1	chr1	140203543	140204543	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20632.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	5.72	6.91	5.55	2.7	6.53	4.02	8.45	3.1	2.5
Merged-chr5-86805608-1	chr5	86805108	86806108	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177680, intron 1 of 16)	B1_Mur4|SINE|Alu	1342.0	NM_001359907	231386.0	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	81.23	93.54	35.15	59.38	78.84	48.23	86.61	88.43	34.35
Merged-chr19-8759723-1	chr19	8759223	8760223	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016813, intron 1 of 20)	intron (NM_016813, intron 1 of 20)	2606.0	NM_001276704	53319.0	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	13.73	11.06	12.95	8.77	5.6	14.47	11.62	17.69	13.74
Merged-chr8-10899459-1	chr8	10898959	10899959	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_102285)	promoter-TSS (NR_102285)	-463.0	NR_102285	71624.0	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	25.17	13.36	16.65	26.31	36.39	24.92	26.4	16.36	5.62
Merged-chr12-79617536-2	chr12	79617022	79618022	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	307211.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	57.21	58.98	67.52	68.82	37.32	47.42	57.03	30.95	62.45
Merged-chr6-5532901-1	chr6	5532401	5533401	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-36623.0	NM_013743	27273.0	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	1.72	3.69	5.55	6.75	5.6	4.02	2.11	1.33	3.75
Merged-chr5-137856569-1	chr5	137856069	137857069	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133209, intron 2 of 4)	intron (NM_133209, intron 2 of 4)	1480.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	10.3	17.97	27.75	13.49	20.06	36.17	39.08	19.9	13.74
Merged-chr9-66880791-1	chr9	66880291	66881291	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	38914.0	NM_173413	235442.0	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	85.81	114.27	69.37	107.28	97.97	97.26	77.1	68.98	55.58
Merged-chr2-129307498-1	chr2	129306998	129307998	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_040371, exon 5 of 5)	non-coding (NR_040371, exon 5 of 5)	2474.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	121.28	182.93	107.29	105.26	62.05	77.97	137.3	167.58	79.94
Merged-chr4-115085770-2	chr4	115085260	115086260	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2948.0	NM_001164558	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	1.72	0.46	0.0	2.02	0.47	1.61	3.17	1.33	1.25
Merged-chr7-132466098-1	chr7	132465598	132466598	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110300.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.57	0.92	5.55	0.67	0.47	3.22	2.11	0.88	0.62
Merged-chr10-81177842-2	chr10	81177326	81178326	+	574.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007907, exon 2 of 14)	exon (NM_007907, exon 2 of 14)	-1135.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	53.2	64.51	60.12	56.68	41.52	53.05	49.64	59.69	41.84
Merged-chr9-65671663-1	chr9	65671163	65672163	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4885.0	NM_010952	18247.0	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	3.43	5.99	5.55	6.75	5.13	23.31	2.11	3.54	2.5
Merged-chr8-85038023-1	chr8	85037523	85038523	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122843, intron 1 of 24)	CpG	855.0	NM_001122843	212999.0	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	20.59	11.06	20.35	25.64	15.39	31.35	14.79	9.73	12.49
Merged-chr10-117832892-1	chr10	117832392	117833392	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	GA-rich|Low_complexity|Low_complexity	13082.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	48.05	32.25	77.7	57.35	24.26	47.42	76.05	61.46	53.08
Merged-chr5-45669095-1	chr5	45668595	45669595	+	574.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019438)	promoter-TSS (NM_019438)	613.0	NR_073433	69788.0	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	40.04	26.26	35.15	31.04	44.32	50.64	38.02	38.91	15.61
Merged-chr12-84030745-1	chr12	84030245	84031245	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7634.0	NM_134247	171282.0	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	11.44	12.9	11.1	17.54	12.13	6.43	11.62	9.73	6.25
Merged-chr13-49102369-1	chr13	49101869	49102869	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 3 of 29)	RMER16_Mm|LTR|ERVK	45959.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	7.44	6.91	16.65	6.75	2.8	9.65	2.11	4.86	8.12
Merged-chr9-99492969-1	chr9	99492469	99493469	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028768, intron 18 of 21)	L1MD|LINE|L1	22548.0	NR_028123	69797.0	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	92.67	109.21	35.15	74.89	65.31	57.87	71.82	125.58	56.21
Merged-chr5-75067097-1	chr5	75066597	75067597	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8504.0	NM_133256	14843.0	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	4.0	0.46	0.0	2.7	3.27	3.22	2.11	0.88	2.5
Merged-chr2-53005425-1	chr2	53004925	53005925	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	147557.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.58	4.15	7.4	11.47	7.46	11.25	8.45	5.75	3.12
Merged-chr15-75993738-1	chr15	75993238	75994238	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177922)	promoter-TSS (NM_177922)	-31.0	NM_177922	332110.0	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	5.15	4.15	5.55	3.37	0.93	6.43	2.11	2.21	3.12
Merged-chr4-74310188-1	chr4	74309688	74310688	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356561, intron 5 of 20)	intron (NM_001356561, intron 5 of 20)	58309.0	NM_001356561	76804.0	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	10.87	10.6	8.32	5.4	11.2	16.08	11.62	11.5	14.99
Merged-chr1-148731603-1	chr1	148731103	148732103	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1190836.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	2.29	5.99	1.85	8.1	2.8	1.61	5.28	2.65	1.25
Merged-chr18-84846671-1	chr18	84846171	84847171	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4667.0	NM_025797	109672.0	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	8.01	3.69	1.85	7.42	7.93	1.61	2.11	2.65	2.5
Merged-chr6-29179342-1	chr6	29178842	29179842	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001101443, intron 1 of 4)	CpG	242.0	NM_001101443	101359.0	Mm.22818	NM_001101443	ENSMUSG00000079654	Prrt4	AW455481|D330027H18Rik	proline-rich transmembrane protein 4	protein-coding	2.86	3.23	7.4	3.37	2.33	1.61	0.0	3.54	0.0
Merged-chr6-124901967-1	chr6	124901467	124902467	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9738.0	NM_008479	16768.0	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	44.05	41.47	35.15	54.65	41.05	28.94	46.47	42.01	23.73
Merged-chr6-54110868-1	chr6	54110368	54111368	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	MIR|SINE|MIR	70936.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	4.58	8.75	4.62	7.42	3.73	9.65	6.34	5.31	8.74
Merged-chr4-116644534-1	chr4	116644034	116645034	+	574.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021473, intron 2 of 8)	B3A|SINE|B2	7140.0	NM_021473	58810.0	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	17.16	8.75	12.02	8.1	5.6	13.66	14.79	6.63	6.25
Merged-chr3-108083410-2	chr3	108082945	108083945	+	573.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289719, intron 2 of 18)	intron (NM_001289719, intron 2 of 18)	1957.0	NM_001346665	109674.0	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	4.0	7.83	7.4	8.1	3.73	4.82	7.39	4.42	0.0
Merged-chr11-109621333-2	chr11	109620830	109621830	+	573.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9941.0	NM_145940	52639.0	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	5.15	1.84	0.0	1.35	2.33	0.0	0.0	0.44	2.5
Merged-chr16-18210889-2	chr16	18210403	18211403	+	573.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_027843, exon 3 of 3)	non-coding (NR_027843, exon 3 of 3)	2630.0	NR_027843	66779.0	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	2.29	0.92	5.55	4.05	0.93	0.0	2.11	0.44	0.0
Merged-chr9-114843725-2	chr9	114843247	114844247	+	573.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027294, intron 1 of 3)	CpG	405.0	NM_027294	70031.0	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	70.93	63.13	38.85	87.04	87.24	62.7	39.08	19.9	18.11
Merged-chr13-102686514-1	chr13	102686014	102687014	+	573.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR23|LTR|ERV1	-7033.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	29.17	38.25	33.3	37.11	14.0	25.72	34.85	19.9	40.59
Merged-chr11-109875992-1	chr11	109875492	109876492	+	573.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30114.0	NR_045909	73257.0	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	3.43	3.69	3.7	4.05	1.87	4.82	3.17	3.1	5.0
Merged-chr1-165154401-1	chr1	165153901	165154901	+	573.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_032005, intron 1 of 7)	intron (NM_032005, intron 1 of 7)	6372.0	NM_032005	83993.0	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	5.72	2.3	9.25	2.7	1.87	2.41	5.28	5.31	2.5
Merged-chr9-101159545-1	chr9	101159045	101160045	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	39528.0	NM_172144	235542.0	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	2.86	3.23	2.77	8.77	5.6	4.02	4.22	2.65	2.5
Merged-chr5-134394818-1	chr5	134394318	134395318	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081462, intron 9 of 29)	intron (NM_001081462, intron 9 of 29)	61444.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	12.59	9.22	11.1	9.45	2.8	12.86	7.39	5.31	6.25
Merged-chr16-45192794-1	chr16	45192294	45193294	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-31543.0	NM_001037719	208154.0	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.86	8.75	4.62	4.05	4.2	1.61	5.28	3.98	2.5
Merged-chr11-43383215-2	chr11	43382697	43383697	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-8736.0	NR_029558	387164.0		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	77.8	97.23	37.92	64.1	29.39	41.8	58.09	51.29	57.46
Merged-chr4-152124679-2	chr4	152124161	152125161	+	573.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207689, intron 7 of 9)	ORR1A3-int|LTR|ERVL-MaLR	4264.0	NM_019585	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	2.29	0.0	0.0	4.72	1.87	3.22	3.17	0.0	3.75
Merged-chr2-73278686-1	chr2	73278186	73279186	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6760.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	2.86	3.23	0.0	4.05	3.27	2.41	4.22	3.54	0.0
Merged-chr5-135397125-1	chr5	135396625	135397625	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-2579.0	NM_148932	107939.0	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.29	2.3	13.87	13.49	7.0	6.43	7.39	2.21	2.5
Merged-chr2-27030828-2	chr2	27030327	27031327	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2829.0	NM_001177627	227659.0	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	9.15	6.45	5.55	5.4	1.4	4.82	9.51	2.65	1.87
Merged-chr17-5202033-1	chr17	5201533	5202533	+	573.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	206959.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	5.72	3.69	1.85	10.12	4.67	8.04	0.0	1.33	6.25
Merged-chr11-115143841-1	chr11	115143341	115144341	+	573.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163753, intron 1 of 8)	intron (NM_001163753, intron 1 of 8)	-9849.0	NM_145634	246746.0	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	4.58	6.91	5.55	7.42	4.2	4.82	8.45	4.42	1.25
Merged-chr15-78340232-3	chr15	78339733	78340733	+	573.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358854, intron 5 of 14)	intron (NM_001358854, intron 5 of 14)	-8366.0	NR_106138	102466845.0		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	6.29	4.15	9.25	6.07	2.8	6.43	2.11	3.1	3.75
Merged-chr16-24275102-3	chr16	24274593	24275593	+	573.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-118257.0	NM_178665	210126.0	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	9.72	0.46	1.85	1.35	0.93	1.61	0.0	2.21	2.5
Merged-chr4-130803010-2	chr4	130802523	130803523	+	573.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	10486.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	177.91	169.11	134.12	180.82	137.15	144.68	265.1	313.05	116.79
Merged-chr17-26451757-1	chr17	26451257	26452257	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	36792.0	NM_001081656	240055.0	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.0	5.99	6.47	2.02	1.87	4.02	2.11	0.88	1.25
Merged-chr2-101782172-1	chr2	101781672	101782672	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355625, intron 1 of 8)	MTD|LTR|ERVL-MaLR	15535.0	NM_175181	72446.0	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	105.83	109.67	46.25	93.11	55.98	72.34	98.23	121.15	66.2
Merged-chr7-129772008-1	chr7	129771508	129772508	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	180145.0	NM_172255	207425.0	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	6.29	5.07	3.7	3.37	1.4	8.84	2.11	3.54	2.5
Merged-chr13-35740401-1	chr13	35739901	35740901	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009881, intron 3 of 9)	intron (NM_009881, intron 3 of 9)	-1001.0	NM_001123386	12593.0	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	12.59	11.98	13.87	8.1	5.6	10.45	16.9	3.98	12.49
Merged-chr18-39587056-1	chr18	39586556	39587556	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99811.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.72	1.84	5.55	9.45	5.6	9.65	5.28	3.54	3.75
Merged-chr18-70613577-1	chr18	70613077	70614077	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010773, intron 3 of 6)	intron (NM_010773, intron 3 of 6)	45285.0	NM_010773	17191.0	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	14.3	9.68	4.62	4.05	6.06	3.22	7.39	4.42	8.12
Merged-chr7-106236414-1	chr7	106235914	106236914	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21074.0	NM_029000	74558.0	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	41.19	58.52	88.8	24.96	43.39	29.74	100.34	125.13	61.2
Merged-chr11-104590272-1	chr11	104589772	104590772	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12991.0	NM_001355755	17896.0	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1EMB|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	5.72	2.3	1.85	5.4	0.93	0.0	5.28	2.65	1.25
Merged-chr6-127149178-1	chr6	127148678	127149678	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040274)	promoter-TSS (NR_040274)	-211.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	141.87	113.35	115.62	22.94	18.19	9.65	15.84	14.59	1.87
Merged-chr9-107909058-1	chr9	107908558	107909558	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_109782, intron 1 of 18)	intron (NR_109782, intron 1 of 18)	2169.0	NM_009074	19882.0	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	2.29	2.3	3.7	2.02	0.0	3.22	3.17	5.75	7.49
Merged-chr8-69118989-1	chr8	69118489	69119489	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21964.0	NM_199364	211134.0	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	8.01	3.69	10.17	2.02	3.27	5.63	4.22	3.54	2.5
Merged-chr12-100764919-1	chr12	100764419	100765419	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14138.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	16.59	23.96	16.65	16.19	15.39	18.49	14.79	11.5	14.99
Merged-chr4-148709658-1	chr4	148709158	148710158	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	66341.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	1.72	4.15	5.55	0.0	3.27	1.61	3.17	0.44	3.12
Merged-chr2-26663742-1	chr2	26663242	26664242	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7540.0	NM_010695	16821.0	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	1.72	0.92	1.85	4.72	0.47	1.61	0.0	3.1	2.5
Merged-chr15-76196345-2	chr15	76195854	76196854	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_201394)	promoter-TSS (NM_201394)	-644.0	NM_201394	18810.0	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	9.72	7.37	10.17	11.47	7.46	8.84	14.79	3.98	8.74
Merged-chr12-85688068-1	chr12	85687568	85688568	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016767, intron 1 of 2)	intron (NM_016767, intron 1 of 2)	1348.0	NM_016767	53314.0	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	6.86	10.14	7.4	4.72	5.6	3.22	4.22	4.42	6.25
Merged-chr9-120496861-2	chr9	120496380	120497380	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4274.0	NM_026892	68969.0	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	5.72	3.23	0.92	1.35	6.06	5.63	2.11	0.88	2.5
Merged-chr9-78073556-2	chr9	78073053	78074053	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	21595.0	NM_008103	14531.0	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1	protein-coding	6.86	15.67	14.8	8.77	11.2	22.51	14.79	19.9	11.87
Merged-chr15-51911933-2	chr15	51911438	51912438	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34497.0	NM_030132	78581.0	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	1.14	5.53	1.85	6.75	4.2	0.0	1.06	1.33	3.75
Merged-chr3-83789935-1	chr3	83789435	83790435	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	23614.0	NM_009144	20319.0	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	5.15	3.23	3.7	3.37	2.8	1.61	4.22	1.77	2.5
Merged-chrY-90737651-1	chrY	90737151	90738151	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IMPB_01|Satellite|Satellite	17399.0	NR_137283	654820.0	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.0	0.0	0.0	1.35	0.47	0.8	5.28	5.75	33.1
Merged-chr4-41353128-1	chr4	41352628	41353628	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001355508, exon 1 of 7)	5' UTR (NM_001355508, exon 1 of 7)	1165.0	NM_001355508	67123.0	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	56.06	61.28	27.75	47.9	55.51	56.27	45.42	60.58	44.97
Merged-chr9-75410909-1	chr9	75410409	75411409	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_015806)	promoter-TSS (NM_015806)	725.0	NR_040719	71274.0	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	125.28	103.68	66.6	158.56	134.82	98.06	238.7	262.65	103.05
Merged-chr5-31292548-1	chr5	31292048	31293048	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_022424, exon 7 of 7)	3' UTR (NM_022424, exon 7 of 7)	-1434.0	NM_026298	67661.0	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	14.3	17.51	5.55	6.75	4.2	11.25	6.34	3.1	5.0
Merged-chr8-33654153-1	chr8	33653653	33654653	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010344, intron 1 of 12)	intron (NM_010344, intron 1 of 12)	915.0	NM_010344	14782.0	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	66.36	55.29	34.22	69.5	59.71	69.93	188.0	153.43	131.15
Merged-chr8-115689292-1	chr8	115688792	115689792	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17602.0	NM_001025577	17132.0	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	8.58	8.29	3.7	34.41	23.79	19.29	7.39	3.1	3.75
Merged-chr5-98185949-1	chr5	98185449	98186449	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153823)	promoter-TSS (NR_153823)	35.0	NR_153823	102637492.0	Mm.399020	NR_153823		A730035I17Rik	Gm34285	RIKEN cDNA A730035I17 gene	ncRNA	3.43	3.23	1.85	5.4	0.0	0.0	0.0	0.88	1.87
Merged-chr15-82998959-1	chr15	82998459	82999459	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001271411, exon 6 of 6)	3' UTR (NM_001271411, exon 6 of 6)	24179.0	NM_028728	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	7.44	1.84	19.42	2.02	3.73	20.09	6.34	6.19	13.12
Merged-chr17-26481140-1	chr17	26480640	26481640	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27332.0	NM_013642	19252.0	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.86	3.69	3.7	10.12	3.27	15.27	6.34	6.63	2.5
Merged-chr2-165448640-1	chr2	165448140	165449140	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_054055, exon 2 of 13)	exon (NM_054055, exon 2 of 13)	24557.0	NM_054055	114644.0	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	2.29	0.92	7.4	2.7	3.73	8.04	3.17	2.21	1.25
Merged-chr9-41052219-1	chr9	41051719	41052719	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	B1_Mur1|SINE|Alu	27287.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	8.58	6.45	9.25	6.07	2.33	12.86	12.67	15.92	12.49
Merged-chr6-72344651-1	chr6	72344151	72345151	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_138592, intron 1 of 12)	intron (NM_138592, intron 1 of 12)	524.0	NM_138592	28035.0	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	176.76	126.72	112.84	156.53	144.15	80.38	163.71	149.01	73.69
Merged-chrX-109198422-1	chrX	109197922	109198922	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001037917, exon 2 of 2)	exon (NM_001037917, exon 2 of 2)	1666.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	38.33	50.23	7.4	29.01	28.92	18.49	35.91	27.86	28.73
Merged-chr19-34752911-1	chr19	34752411	34753411	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5800.0	NM_172838	240638.0	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	10.87	14.28	0.0	14.17	9.8	8.04	16.9	19.01	3.12
Merged-chr3-84703538-1	chr3	84703038	84704038	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_177260, exon 7 of 7)	3' UTR (NM_177260, exon 7 of 7)	37346.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	3.43	4.15	2.77	0.0	0.47	1.61	1.06	3.98	1.25
Merged-chr10-19956118-1	chr10	19955618	19956618	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008580, intron 1 of 29)	URR1B|DNA|hAT-Charlie	21592.0	NM_008580	26408.0	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	20.59	16.13	12.02	18.22	14.46	22.51	10.56	15.03	6.87
Merged-chr5-32073564-1	chr5	32073064	32074064	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144541, intron 11 of 11)	intron (NM_144541, intron 11 of 11)	-62908.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.86	4.15	5.55	5.4	0.93	4.82	4.22	3.1	3.75
Merged-chr1-125470450-1	chr1	125469950	125470950	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-34723.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	91.53	73.26	110.99	98.51	41.05	91.63	153.15	135.3	75.57
Merged-chr1-23434642-1	chr1	23434142	23435142	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-51467.0	NM_001081079	70155.0	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	41.76	35.02	51.8	29.69	40.12	58.68	55.98	48.2	33.1
Merged-chr10-44698180-1	chr10	44697680	44698680	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-239432.0	NM_007548	12142.0	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	21.74	19.81	12.95	12.14	15.39	19.29	32.74	20.34	13.74
Merged-chr18-20704302-1	chr18	20703802	20704802	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 4 of 8)	intron (NM_019737, intron 4 of 8)	-39042.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	10.87	10.6	18.5	9.45	7.46	12.86	7.39	3.98	8.12
Merged-chr2-26586775-1	chr2	26586275	26587275	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164564, intron 1 of 8)	CpG	145.0	NM_001164564	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	4.0	1.38	9.25	4.05	1.4	1.61	3.17	4.42	2.5
Merged-chr2-31128126-1	chr2	31127626	31128626	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355105, intron 1 of 15)	MIR|SINE|MIR	13882.0	NM_001355106	14269.0	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	39.47	46.08	38.85	33.06	27.52	53.05	30.63	32.28	40.59
Merged-chr19-6920867-1	chr19	6920367	6921367	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007953, intron 1 of 6)	intron (NM_007953, intron 1 of 6)	941.0	NM_007953	26379.0	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	68.65	36.86	27.75	55.33	35.92	55.46	71.82	44.22	24.36
Merged-chr16-13239130-1	chr16	13238630	13239630	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-17351.0	NM_001122667	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	12.59	5.07	10.17	12.14	2.33	8.04	9.51	6.19	9.99
Merged-chr2-164074667-1	chr2	164074167	164075167	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021420, intron 1 of 10)	MIR|SINE|MIR	489.0	NM_021420	58231.0	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	90.96	64.51	89.72	74.22	67.64	98.06	102.45	103.02	63.7
Merged-chr3-30875210-1	chr3	30874710	30875710	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286994, intron 1 of 3)	Lx9|LINE|L1	19260.0	NM_001286994	71862.0	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	3.43	5.07	2.77	4.05	4.2	3.22	7.39	3.54	0.0
Merged-chr12-111447213-1	chr12	111446713	111447713	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009396, intron 3 of 11)	intron (NM_009396, intron 3 of 11)	4552.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	22.31	12.9	23.12	29.01	19.59	26.53	42.25	24.32	23.11
Merged-chr13-58453766-1	chr13	58453266	58454266	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-50423.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	80.09	69.12	53.65	91.76	55.98	71.54	91.89	77.82	48.09
Merged-chr3-137950019-1	chr3	137949519	137950519	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011932, intron 3 of 8)	RSINE1|SINE|B4	31464.0	NM_019920	56692.0	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	61.21	71.42	47.17	70.17	47.12	95.65	79.21	86.66	54.96
Merged-chr5-121946046-1	chr5	121945546	121946546	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	97049.0	NM_001359949	231717.0	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	5.72	2.76	1.85	2.7	0.47	4.02	6.34	1.77	2.5
Merged-chr3-88686266-1	chr3	88685766	88686766	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_151827, intron 1 of 13)	CpG	479.0	NR_151827	74200.0	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Khdc4|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	291.18	313.33	327.43	290.13	266.84	261.23	216.52	312.17	222.33
Merged-chr19-5050515-1	chr19	5050015	5051015	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145495)	promoter-TSS (NM_145495)	-293.0	NM_145495	225870.0	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	2.29	2.3	2.77	9.45	3.27	0.0	1.06	0.44	2.5
Merged-chr5-105701148-1	chr5	105700648	105701648	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178701, intron 1 of 2)	intron (NM_178701, intron 1 of 2)	338.0	NM_178701	231549.0	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	125.85	146.53	62.9	192.29	186.14	134.23	159.48	164.93	78.69
Merged-chr4-142081116-1	chr4	142080616	142081616	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145402, intron 1 of 2)	intron (NM_145402, intron 1 of 2)	-3182.0	NR_027137	100038693.0	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	93.82	80.64	98.97	101.88	91.44	91.63	179.55	131.77	66.82
Merged-chr5-43293761-1	chr5	43293261	43294261	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58407.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	8.58	5.53	1.85	10.12	1.87	4.82	8.45	7.07	4.37
Merged-chr13-113340806-1	chr13	113340306	113341306	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	131147.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	2.86	1.38	1.85	2.7	5.6	0.0	1.06	2.21	1.25
Merged-chr9-46119306-1	chr9	46118806	46119806	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	106486.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	6.86	6.91	12.95	15.52	5.6	0.8	5.28	5.75	4.37
Merged-chr11-86578049-1	chr11	86577549	86578549	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	6109.0	NR_029738	387140.0		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	338.08	301.81	256.21	360.97	285.04	308.65	335.87	364.79	234.2
Merged-chr5-147389151-1	chr5	147388651	147389651	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010229, intron 1 of 23)	L1ME2|LINE|L1	11338.0	NM_010229	14255.0	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.57	4.15	5.55	4.72	3.73	6.43	1.06	0.88	3.75
Merged-chr8-125084068-2	chr8	125083546	125084546	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_174854, intron 1 of 12)	intron (NM_174854, intron 1 of 12)	29851.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	65.79	64.51	68.45	66.12	52.72	81.18	80.27	45.99	39.97
Merged-chr11-103375969-1	chr11	103375469	103376469	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183034, intron 7 of 11)	PB1D10|SINE|Alu	-12277.0	NM_001205236	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	38.9	36.86	40.7	39.81	38.25	35.37	34.85	32.72	30.6
Merged-chr2-120478843-2	chr2	120478354	120479354	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001109761, intron 1 of 20)	B3|SINE|B2	1945.0	NM_001109761	12335.0	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	2.29	3.69	2.77	1.35	2.33	1.61	4.22	3.98	1.87
Merged-chr7-45450073-1	chr7	45449573	45450573	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030678, intron 12 of 15)	B3|SINE|B2	9813.0	NM_010240	14325.0	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	3.43	0.46	3.7	8.1	2.33	5.63	5.28	1.77	9.99
Merged-chr2-73053266-1	chr2	73052766	73053766	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-72820.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	16.59	14.28	23.12	20.92	10.26	20.09	15.84	16.8	14.36
Merged-chr18-61082304-1	chr18	61081804	61082804	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008809, intron 22 of 22)	intron (NM_008809, intron 22 of 22)	-23268.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	2.29	2.76	0.0	3.37	1.87	3.22	10.56	8.4	6.25
Merged-chr3-96593507-1	chr3	96593007	96594007	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027241, intron 1 of 7)	intron (NM_027241, intron 1 of 7)	674.0	NM_027241	69870.0	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	48.62	42.39	36.07	65.45	43.85	28.94	73.93	97.28	26.85
Merged-chr15-5244793-1	chr15	5244293	5245293	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008965)	promoter-TSS (NM_008965)	-606.0	NM_008965	19219.0	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	3.43	4.15	3.7	8.1	4.67	3.22	8.45	2.65	1.25
Merged-chr17-5566900-1	chr17	5566400	5567400	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	74300.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	18.88	15.67	12.95	19.57	24.26	27.33	14.79	12.38	14.36
Merged-chr5-134456113-1	chr5	134455613	134456613	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001081465, exon 1 of 30)	5' UTR (NM_001081465, exon 1 of 30)	149.0	NM_001081465	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	49.77	30.87	37.92	76.24	50.38	69.13	117.24	76.94	38.1
Merged-chr8-26981072-1	chr8	26980572	26981572	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001101502, exon 2 of 2)	3' UTR (NM_001101502, exon 2 of 2)	3736.0	NM_001110508	353310.0	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	50.34	67.74	67.52	77.59	60.65	46.62	68.65	68.09	68.07
Merged-chr5-36596414-1	chr5	36595914	36596914	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-10188.0	NM_001113362	100855.0	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	8.58	9.68	9.25	11.47	8.86	22.51	9.51	2.65	8.74
Merged-chr2-142935231-1	chr2	142934731	142935731	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32266.0	NR_131921	75053.0	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	4.58	4.15	1.85	10.12	0.93	3.22	7.39	0.0	4.37
Merged-chr6-120531919-1	chr6	120531419	120532419	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144815)	promoter-TSS (NM_144815)	-620.0	NM_144815	214932.0	Mm.255322	NM_144815	ENSMUSG00000058979	Hdhd5	A930002G03Rik|Cecr5	haloacid dehalogenase like hydrolase domain containing 5	protein-coding	25.74	15.21	18.5	36.43	53.18	29.74	35.91	34.05	37.47
Merged-chr11-6560144-1	chr11	6559644	6560644	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190344)	promoter-TSS (NM_001190344)	-39.0	NM_001190344	216527.0	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	33.18	42.39	29.6	52.63	36.39	49.83	55.98	59.69	38.1
Merged-chr19-29821158-1	chr19	29820658	29821658	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8184.0	NM_177721	240614.0	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	5.72	3.23	9.25	3.37	2.33	0.0	5.28	1.33	1.25
Merged-chr13-98959982-1	chr13	98959482	98960482	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	24583.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.57	3.23	8.32	4.72	1.4	1.61	23.24	28.3	38.72
Merged-chr11-94317725-1	chr11	94317225	94318225	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361574, intron 1 of 9)	B3|SINE|B2	4238.0	NR_155069	67684.0	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	51.48	36.4	49.02	38.46	41.52	33.76	38.02	61.9	31.85
Merged-chr6-122561074-1	chr6	122560574	122561574	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_009645, exon 3 of 5)	exon (NM_009645, exon 3 of 5)	7265.0	NM_009645	11628.0	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.72	1.38	0.0	4.05	2.33	4.02	9.51	5.31	3.75
Merged-chr2-45232489-1	chr2	45231989	45232989	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-115047.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	142.44	188.92	85.1	134.27	128.76	136.64	142.59	160.06	66.82
Merged-chr6-119430760-1	chr6	119430260	119431260	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13232.0	NM_197985	68465.0	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	4.0	3.69	0.0	6.07	5.6	4.82	2.11	2.21	1.25
Merged-chr6-24708290-1	chr6	24707790	24708790	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24955.0	NM_028920	74409.0	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	23.45	28.57	14.8	50.6	53.65	53.85	14.79	15.48	9.99
Merged-chr9-41999822-1	chr9	41999322	42000322	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357261, intron 26 of 42)	intron (NM_001357261, intron 26 of 42)	77391.0	NM_001357261	20660.0	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	7.44	3.23	0.0	3.37	0.47	0.0	3.17	0.0	0.0
Merged-chr11-89089797-1	chr11	89089297	89090297	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033266, intron 3 of 3)	MLTR14|LTR|ERV1	15956.0	NM_001033266	217071.0	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.0	0.0	0.0	0.0	0.0	0.0	45.42	65.44	34.35
Merged-chr4-40014813-1	chr4	40014313	40015313	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128452.0	NM_007386	11428.0	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	2.29	1.84	0.92	1.35	2.8	0.0	3.17	1.77	3.75
Merged-chr16-82761594-1	chr16	82761094	82762094	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	1560897.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	1.14	2.3	0.0	6.07	6.06	4.02	2.11	5.31	5.62
Merged-chr10-117843311-1	chr10	117842811	117843811	+	573.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	B2_Mm2|SINE|B2	2663.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	243.12	230.85	96.2	234.13	136.69	158.35	245.04	305.98	97.43
Merged-chr2-102810005-1	chr2	102809505	102810505	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1|LINE|L1	-63245.0	NR_153853	102637542.0	Mm.371582	NR_153852		Gm13872	-	predicted gene 13872	ncRNA	4.0	3.23	12.95	6.75	7.0	4.82	7.39	3.1	13.74
Merged-chr1-75559655-1	chr1	75559155	75560155	+	573.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_009208)	TTS (NM_009208)	13193.0	NM_001357150	20536.0	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.57	2.76	1.85	1.35	1.4	2.41	2.11	1.33	1.25
Merged-chr2-102825045-1	chr2	102824545	102825545	+	573.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 11 of 13)	MTD|LTR|ERVL-MaLR	76620.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	6.29	8.29	12.95	13.49	4.67	12.06	10.56	5.31	17.49
Merged-chr13-56422510-3	chr13	56422041	56423041	+	572.916687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15814.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	5.15	3.69	3.7	5.4	1.4	4.02	2.11	1.33	3.75
Merged-chr7-122347622-2	chr7	122347101	122348101	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316672, intron 2 of 16)	intron (NM_001316672, intron 2 of 16)	58476.0	NM_008855	18751.0	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	14.87	2.3	1.85	5.4	1.4	4.82	6.34	1.33	4.37
Merged-chr9-48586553-2	chr9	48586035	48587035	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18588.0	NM_010924	18113.0	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	10.87	3.69	0.0	4.05	4.2	4.82	3.17	0.44	0.0
Merged-chr6-115227674-2	chr6	115227176	115228176	+	572.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001111015, intron 1 of 12)	intron (NM_001111015, intron 1 of 12)	-11318.0	NM_001326560	20965.0	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	3.43	0.92	1.85	5.4	3.27	1.61	2.11	6.19	5.62
Merged-chr13-58403805-1	chr13	58403305	58404305	+	572.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001301341)	promoter-TSS (NM_001301341)	-462.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	74.94	65.43	22.2	50.6	50.85	50.64	46.47	65.0	33.72
Merged-chr11-120579872-2	chr11	120579372	120580372	+	572.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133796, intron 3 of 5)	intron (NM_133796, intron 3 of 5)	1748.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	53.77	32.72	52.72	28.34	20.99	44.21	22.18	33.16	13.12
Merged-chr2-84246704-1	chr2	84246204	84247204	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	178562.0	NM_018782	54598.0	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	3.43	5.07	3.7	4.05	2.33	1.61	4.22	0.88	5.0
Merged-chr4-57928011-1	chr4	57927511	57928511	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11747.0	NM_178727	242484.0	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	2.29	3.23	0.0	1.35	3.27	1.61	5.28	0.88	0.0
Merged-chr12-87442761-1	chr12	87442261	87443261	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001013372)	TTS (NM_001013372)	1078.0	NM_001102565	211064.0	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	177.34	230.39	135.04	130.9	122.23	102.08	217.57	279.01	109.29
Merged-chr19-11081130-1	chr19	11080630	11081630	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_022430)	promoter-TSS (NM_022430)	-27.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	21.17	24.42	15.72	18.22	18.66	19.29	28.52	23.88	10.62
Merged-chr14-57525523-1	chr14	57525023	57526023	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145837, exon 2 of 3)	exon (NM_145837, exon 2 of 3)	694.0	NM_145837	239114.0	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.57	0.0	3.7	4.05	0.0	0.0	4.22	0.44	0.0
Merged-chr18-46936970-1	chr18	46936470	46937470	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15155.0	NM_001033446	381142.0	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	3.43	1.38	1.85	2.02	2.33	2.41	2.11	0.88	5.0
Merged-chr3-86317798-1	chr3	86317298	86318298	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001077687, intron 14 of 50)	intron (NM_001077687, intron 14 of 50)	93108.0	NM_001077688	80877.0	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	5.15	1.38	0.0	4.72	4.2	3.22	3.17	2.21	2.5
Merged-chr4-43264576-1	chr4	43264076	43265076	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001310758, exon 39 of 39)	3' UTR (NM_001310758, exon 39 of 39)	-2583.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	14.87	8.29	9.25	10.8	5.13	16.88	4.22	3.1	2.5
Merged-chr12-82220871-1	chr12	82220371	82221371	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	50855.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	5.15	1.84	0.0	9.45	4.2	2.41	11.62	2.65	6.87
Merged-chr6-127142286-1	chr6	127141786	127142786	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009829, intron 3 of 4)	intron (NM_009829, intron 3 of 4)	-7103.0	NR_040274	77558.0	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	8.01	6.91	1.85	2.02	1.4	0.0	4.22	2.21	0.62
Merged-chr12-115614407-1	chr12	115613907	115614907	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	81387.0	NR_105810	102465205.0		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	2.29	4.61	0.0	10.8	14.0	16.88	2.11	2.21	1.25
Merged-chr19-7267313-2	chr19	7266854	7267854	+	572.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054048)	promoter-TSS (NM_054048)	-40.0	NM_054048	104383.0	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	3.43	4.15	1.85	2.02	4.67	4.02	6.34	1.33	6.25
Merged-chr11-95521738-2	chr11	95521248	95522248	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7183.0	NM_130858	104079.0	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	6.29	1.84	3.7	4.05	0.47	0.0	4.22	0.88	3.75
Merged-chr9-63956070-1	chr9	63955570	63956570	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 3 of 3)	intron (NM_008542, intron 3 of 3)	65989.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	5.72	5.53	1.85	4.05	2.33	10.45	7.39	1.33	6.25
Merged-chr6-86405291-1	chr6	86404791	86405791	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164078, intron 1 of 11)	intron (NM_001164078, intron 1 of 11)	1072.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	64.07	80.18	38.85	77.59	89.57	50.64	68.65	83.57	33.1
Merged-chr9-123523850-2	chr9	123523355	123524355	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-5898.0	NM_001357485	83493.0	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	1.72	4.15	0.0	5.4	2.8	3.22	5.28	2.21	0.0
Merged-chr19-53800723-1	chr19	53800223	53801223	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	-91508.0	NM_011050	18569.0	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	1.72	2.76	0.0	4.05	2.33	7.23	9.51	3.1	1.25
Merged-chr12-73914830-1	chr12	73914330	73915330	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010431, intron 1 of 14)	intron (NM_010431, intron 1 of 14)	6963.0	NM_001313919	15251.0	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	5.72	7.83	16.65	4.72	8.4	5.63	9.51	4.42	1.25
Merged-chr16-11060821-1	chr16	11060321	11061321	+	572.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-5477.0	NM_009223	20621.0	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	5.72	4.61	1.85	2.7	1.4	0.8	1.06	0.88	5.0
Merged-chr16-58502732-1	chr16	58502232	58503232	+	572.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	B1F|SINE|Alu	20694.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	147.02	95.38	109.14	143.04	57.38	104.49	121.46	135.3	100.55
Merged-chr19-12488202-1	chr19	12487702	12488702	+	572.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172442, intron 2 of 8)	intron (NM_172442, intron 2 of 8)	13794.0	NM_172442	207521.0	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.57	0.92	5.55	5.4	2.33	8.04	4.22	2.65	3.12
Merged-chr17-32403011-2	chr17	32402545	32403545	+	572.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_029458)	promoter-TSS (NR_029458)	31.0	NR_029458	664702.0	Mm.381066	NR_029458		A530088E08Rik	-	RIKEN cDNA A530088E08 gene	ncRNA	8.58	14.75	20.35	14.17	17.73	13.66	16.9	13.71	11.87
Merged-chr11-78278073-1	chr11	78277573	78278573	+	572.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002004, intron 24 of 38)	intron (NM_001002004, intron 24 of 38)	-12768.0	NM_001287206	216976.0	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	28.03	29.49	39.77	13.49	18.19	20.09	24.29	25.2	19.36
Merged-chr11-3880040-1	chr11	3879540	3880540	+	572.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15086.0	NM_026150	67430.0	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	2.86	6.45	3.7	4.72	3.27	3.22	5.28	3.54	6.25
Merged-chr15-53399288-3	chr15	53398824	53399824	+	572.222229	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-53141.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	57.78	50.69	35.15	49.25	42.45	45.82	52.81	52.62	38.1
Merged-chrX-99027610-3	chrX	99027105	99028105	+	572.166687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14976.0	NM_199018	236920.0	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	5.72	4.15	5.55	6.75	4.67	10.45	10.56	3.98	5.62
Merged-chr13-4110704-1	chr13	4110204	4111204	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39927.0	NM_134066	105349.0	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	2.86	1.38	5.55	2.02	3.73	1.61	2.11	0.88	8.74
Merged-chr16-20829285-2	chr16	20828793	20829793	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-94782.0	NM_009379	21832.0	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	16.02	17.51	12.02	10.12	10.73	15.27	39.08	33.6	17.49
Merged-chr8-117366682-1	chr8	117366182	117367182	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028941, intron 1 of 20)	intron (NM_028941, intron 1 of 20)	17512.0	NM_028941	74440.0	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	15.45	8.75	10.17	10.12	11.2	16.88	22.18	15.48	8.74
Merged-chr2-22789779-1	chr2	22789279	22790279	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019456, intron 1 of 13)	L1MB7|LINE|L1	15452.0	NM_019456	54519.0	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	32.04	39.63	20.35	33.06	24.72	48.23	58.09	62.35	31.85
Merged-chr3-106448706-1	chr3	106448206	106449206	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-33725.0	NM_001093754	72121.0	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	5.72	5.07	0.0	1.35	2.33	1.61	2.11	5.31	1.87
Merged-chr5-115554391-1	chr5	115553891	115554891	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_133915, exon 12 of 12)	3' UTR (NM_133915, exon 12 of 12)	-5076.0	NM_007475	11837.0	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	4.0	2.76	3.7	9.45	2.8	4.02	1.06	0.0	1.25
Merged-chr19-7505833-1	chr19	7505333	7506333	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	intron (NM_146091, intron 1 of 12)	11395.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	9.15	10.14	12.95	15.52	6.06	14.47	10.56	7.07	12.49
Merged-chr14-13001289-1	chr14	13000789	13001789	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178210.0	NM_001359919	27062.0	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	2.29	5.07	5.55	1.35	1.87	7.23	3.17	0.44	3.75
Merged-chr13-111804397-2	chr13	111803894	111804894	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	4599.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	90.96	58.98	44.4	132.24	91.9	84.4	113.01	87.99	56.21
Merged-chr2-129296380-1	chr2	129295880	129296880	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_040371)	promoter-TSS (NR_040371)	832.0	NM_181589	70466.0	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	16.59	12.44	5.55	15.52	4.2	4.02	11.62	6.19	8.74
Merged-chr4-141425890-1	chr4	141425390	141426390	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_013868)	TTS (NM_013868)	5111.0	NM_013868	29818.0	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	4.58	4.15	11.1	8.1	1.4	0.0	10.56	1.33	0.62
Merged-chr5-135773322-1	chr5	135772822	135773822	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029659, intron 1 of 8)	RLTR40|LTR|ERVK	4979.0	NM_001289554	76571.0	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	9.72	23.96	11.1	16.87	24.26	21.7	43.3	33.6	24.98
Merged-chr2-142858631-1	chr2	142858131	142859131	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355123, intron 3 of 26)	intron (NM_001355123, intron 3 of 26)	42833.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	24.03	16.13	13.87	29.01	21.46	17.68	20.07	22.55	8.74
Merged-chr8-105397991-1	chr8	105397491	105398491	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001301173, intron 2 of 15)	intron (NM_001301173, intron 2 of 15)	15511.0	NM_177791	279499.0	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	1.72	4.15	3.7	2.7	3.27	0.0	4.22	1.33	2.5
Merged-chr18-68952054-1	chr18	68951554	68952554	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_038051)	promoter-TSS (NR_038051)	-526.0	NR_038051	78931.0	Mm.160155	NR_038051		4930546C10Rik	-	RIKEN cDNA 4930546C10 gene	ncRNA	5.72	5.53	1.85	4.05	3.27	8.04	2.11	0.0	7.49
Merged-chr1-9703286-1	chr1	9702786	9703786	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-3077.0	NM_008651	17864.0	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	6.29	4.15	3.7	6.75	1.87	3.22	5.28	5.75	3.12
Merged-chr1-132982932-1	chr1	132982432	132983432	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	42484.0	NR_126506	17248.0	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.29	4.61	3.7	2.7	1.87	0.0	1.06	0.88	2.5
Merged-chr6-67056747-1	chr6	67056247	67057247	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-19340.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	14.87	5.53	3.7	8.1	5.6	4.82	10.56	1.77	4.37
Merged-chr9-114898960-1	chr9	114898460	114899460	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_175380)	TTS (NM_175380)	35027.0	NM_175380	333433.0	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	4.58	5.07	3.7	4.72	4.67	1.61	10.56	12.38	9.99
Merged-chr5-139795076-2	chr5	139794583	139795583	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	3547.0	NM_010757	17135.0	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	6.86	5.99	1.85	6.75	4.2	8.04	4.22	1.77	5.0
Merged-chr7-98194292-1	chr7	98193792	98194792	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081167, exon 2 of 2)	exon (NM_001081167, exon 2 of 2)	5183.0	NM_001081167	272411.0	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	6.29	0.92	5.55	11.47	1.87	3.22	1.06	0.88	1.87
Merged-chr16-36642210-1	chr16	36641710	36642710	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	intron (NM_019388, intron 1 of 7)	23867.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	148.73	100.45	91.57	122.8	76.04	101.28	107.73	122.92	83.69
Merged-chr4-86588373-2	chr4	86587876	86588876	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173400, intron 12 of 16)	B3|SINE|B2	-1806.0	NR_028545	100217448.0	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	1.14	3.23	2.77	0.67	1.87	8.04	1.06	2.65	1.25
Merged-chr16-97845776-1	chr16	97845276	97846276	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359077, intron 1 of 23)	intron (NM_001359077, intron 1 of 23)	5451.0	NM_144789	114604.0	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	6.29	6.91	7.4	5.4	7.0	9.65	8.45	2.21	8.74
Merged-chr11-73129534-1	chr11	73129034	73130034	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361245, intron 21 of 30)	intron (NM_001361245, intron 21 of 30)	8760.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	46.91	56.68	50.87	37.11	21.46	36.17	43.3	59.69	27.48
Merged-chr18-43515250-1	chr18	43514750	43515750	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76964.0	NM_001291455	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	3.43	2.76	0.0	5.4	5.13	3.22	2.11	5.75	3.75
Merged-chr16-76563032-1	chr16	76562532	76563532	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14237.0	NR_155449	102632730.0		NR_155449		Gm30726	-	predicted gene, 30726	ncRNA	1.72	3.23	1.85	2.7	1.87	3.22	10.56	2.21	5.0
Merged-chr6-56489353-1	chr6	56488853	56489853	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-119719.0	NM_001159955	18575.0	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	1.72	2.3	0.0	6.75	4.2	1.61	1.06	3.98	3.75
Merged-chr1-16329864-1	chr1	16329364	16330364	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	189251.0	NM_001347044	29819.0	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen double-stranded RNA binding protein 2	protein-coding	5.72	5.07	16.65	10.8	7.46	6.43	6.34	6.63	6.87
Merged-chr11-108077670-1	chr11	108077170	108078170	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	80822.0	NR_106082	102465705.0		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	4.0	7.37	1.85	4.05	1.4	6.43	4.22	3.1	3.75
Merged-chr1-105911077-1	chr1	105910577	105911577	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	79205.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	4.58	3.69	3.7	4.72	6.53	1.61	3.17	4.86	2.5
Merged-chr18-62172114-1	chr18	62171614	62172614	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	7867.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	24.6	23.04	32.37	22.94	16.33	24.11	21.12	18.57	11.87
Merged-chr2-74697857-1	chr2	74697357	74698357	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013555)	promoter-TSS (NM_013555)	94.0	NM_013555	15438.0	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	2.86	0.46	3.7	1.35	0.0	0.0	0.0	1.77	0.62
Merged-chr8-35114188-1	chr8	35113688	35114688	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-148498.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.58	5.53	3.7	4.05	2.8	1.61	1.06	0.44	3.75
Merged-chr16-36708041-1	chr16	36707541	36708541	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285788, intron 1 of 7)	C-rich|Low_complexity|Low_complexity	14063.0	NM_001285791	106347.0	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	9.72	15.67	9.25	15.52	6.06	12.86	10.56	14.15	11.24
Merged-chr11-88997520-1	chr11	88997020	88998020	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	-1883.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	16.59	22.58	23.12	14.17	14.46	16.08	10.56	12.38	14.99
Merged-chr9-107645783-2	chr9	107645277	107646277	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10435.0	NM_008138	14678.0	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	3.43	3.69	10.17	4.05	0.0	3.22	4.22	0.88	2.5
Merged-chr7-67494960-1	chr7	67494460	67495460	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-122102.0	NM_001357324	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	3.43	7.83	4.62	6.75	4.2	12.06	4.22	2.65	5.0
Merged-chr10-118094012-1	chr10	118093512	118094512	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47775.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	15.45	9.68	15.72	10.12	10.26	15.27	36.97	31.84	30.6
Merged-chr16-29814143-2	chr16	29813635	29814635	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	164989.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	4.58	0.46	1.85	5.4	0.47	4.02	1.06	1.33	2.5
Merged-chr14-63146116-1	chr14	63145616	63146616	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007798)	TTS (NM_007798)	23654.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	32.61	24.88	22.2	29.01	36.85	48.23	30.63	27.41	23.11
Merged-chr11-72225058-1	chr11	72224558	72225558	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9466.0	NM_026068	67279.0	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	5.72	4.15	0.0	2.02	1.87	2.41	0.0	1.33	0.62
Merged-chr3-116436343-1	chr3	116435843	116436843	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12311.0	NM_001173553	229776.0	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	20.02	25.34	24.97	12.14	10.73	15.27	23.24	14.15	18.11
Merged-chr2-119742721-1	chr2	119742221	119743221	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	384.0	NM_146125	228550.0	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	12.01	2.3	15.72	10.8	5.13	8.04	5.28	3.1	9.37
Merged-chr16-33306761-1	chr16	33306261	33307261	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55305.0	NM_080557	69150.0	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	3.43	4.61	3.7	6.75	3.27	4.82	5.28	1.77	5.0
Merged-chr18-38233166-1	chr18	38232666	38233666	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17032.0	NR_015475	73516.0	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	17.73	30.41	14.8	31.71	21.46	30.54	39.08	45.54	42.47
Merged-chr18-34380175-1	chr18	34379675	34380675	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6760.0	NM_007874	13476.0	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	30.32	27.19	15.72	33.74	20.53	21.7	17.96	23.43	14.36
Merged-chr14-8135341-1	chr14	8134841	8135841	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360314, intron 4 of 19)	intron (NM_001360314, intron 4 of 19)	37130.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	9.15	9.68	1.85	8.77	12.6	12.86	5.28	3.1	5.62
Merged-chr16-92821820-1	chr16	92821320	92822320	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	4254.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	31.46	24.88	13.87	29.69	22.39	8.04	19.01	10.61	14.36
Merged-chr7-110394190-2	chr7	110393682	110394682	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177324, intron 17 of 40)	MTC|LTR|ERVL-MaLR	172479.0	NM_009302	20947.0	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	15.45	17.05	14.8	12.14	8.86	14.47	25.35	19.01	15.61
Merged-chr16-44951850-1	chr16	44951350	44952350	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027578, intron 2 of 4)	ORR1C2|LTR|ERVL-MaLR	8172.0	NM_001128132	74603.0	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	5.15	3.23	5.55	4.05	3.27	4.82	4.22	9.29	7.49
Merged-chr13-75344787-1	chr13	75344287	75345287	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	254930.0	NM_013628	18548.0	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	1.14	2.3	0.0	2.7	2.33	1.61	3.17	5.75	6.25
Merged-chr8-106603294-1	chr8	106602794	106603794	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-56.0	NM_009864	12550.0	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	2.86	1.38	0.92	4.72	0.93	3.22	5.28	3.98	1.25
Merged-chr5-72511368-1	chr5	72510868	72511868	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6828.0	NM_001122756	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	10.3	6.45	6.47	2.7	4.67	8.04	3.17	5.31	14.36
Merged-chr11-29190579-1	chr11	29190079	29191079	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134034, intron 4 of 15)	URR1A|DNA|hAT-Charlie	17672.0	NM_134034	104570.0	Mm.276386	NM_134034	ENSMUSG00000020463	Ppp4r3b	AW011752|AW557776|Smek2|mKIAA1387	protein phosphatase 4 regulatory subunit 3B	protein-coding	7.44	2.76	9.25	8.77	4.2	4.82	4.22	7.07	6.25
Merged-chr2-131821121-1	chr2	131820621	131821621	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_029381, exon 3 of 3)	non-coding (NR_029381, exon 3 of 3)	26535.0	NR_029381	414081.0	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	6.86	2.3	0.0	2.7	1.4	3.22	2.11	3.54	5.0
Merged-chrX-38455367-1	chrX	38454867	38455867	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152733, intron 1 of 9)	intron (NR_152733, intron 1 of 9)	1093.0	NR_152733	16784.0	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	60.64	60.36	37.0	60.72	44.78	49.83	92.94	79.59	39.97
Merged-chr10-128335754-1	chr10	128335254	128336254	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1973.0	NM_026444	12974.0	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	6.86	4.15	1.85	10.8	3.73	4.82	4.22	3.98	7.49
Merged-chr8-104371288-2	chr8	104370793	104371793	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	B1_Mur4|SINE|Alu	24514.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	65.21	89.85	54.57	53.98	37.79	64.3	65.48	89.32	59.95
Merged-chr7-75649198-2	chr7	75648707	75649707	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	193673.0	NM_029332	75547.0	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	12.01	23.04	7.4	20.24	17.73	22.51	10.56	5.75	5.62
Merged-chr8-25331451-1	chr8	25330951	25331951	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25181.0	NR_040352	74489.0	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	5.15	3.23	3.7	2.02	4.2	1.61	4.22	3.98	7.49
Merged-chr19-7484239-1	chr19	7483739	7484739	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271487)	promoter-TSS (NM_001271487)	-948.0	NM_001003934	20168.0	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	40.04	61.75	38.85	24.29	24.72	38.58	39.08	53.06	29.35
Merged-chr2-144004346-2	chr2	144003838	144004838	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133626, intron 1 of 2)	intron (NM_133626, intron 1 of 2)	6925.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	96.11	78.33	51.8	53.98	46.65	49.03	61.26	53.5	33.1
Merged-chr2-30268648-2	chr2	30268101	30269101	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	1782.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	20.59	21.66	14.8	31.04	19.59	30.54	23.24	20.34	13.74
Merged-chr10-84162825-1	chr10	84162325	84163325	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62128.0	NR_152790	102637349.0	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	5.15	5.07	12.02	5.4	4.2	3.22	3.17	3.54	5.0
Merged-chr2-83759393-1	chr2	83758893	83759893	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	34996.0	NM_008402	16410.0	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	22.88	22.12	18.5	22.27	25.19	22.51	15.84	5.75	11.87
Merged-chr1-128006360-1	chr1	128005860	128006860	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 8 of 20)	intron (NM_001285945, intron 8 of 20)	96111.0	NM_027678	226409.0	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.0	5.07	13.87	2.7	7.93	0.8	6.34	3.54	6.87
Merged-chr16-55813310-1	chr16	55812810	55813810	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001159395, intron 12 of 12)	intron (NM_001159395, intron 12 of 12)	8828.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	6.86	11.52	14.8	10.12	7.46	20.09	7.39	3.54	16.24
Merged-chr5-77194114-1	chr5	77193614	77194614	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	17091.0	NM_001289767	69982.0	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	23.45	29.03	20.35	2.7	2.8	9.65	14.79	17.69	10.62
Merged-chr10-41602766-1	chr10	41602266	41603266	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358562, intron 29 of 47)	intron (NM_001358562, intron 29 of 47)	34750.0	NR_045341	70538.0	Mm.399807	NR_045341	ENSMUSG00000091370	5730435O14Rik	-	RIKEN cDNA 5730435O14 gene	ncRNA	5.72	10.14	1.85	7.42	3.73	6.43	7.39	4.42	10.62
Merged-chr17-43460684-1	chr17	43460184	43461184	+	572.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42089.0	NM_008585	17287.0	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	2.86	1.84	1.85	2.02	1.87	1.61	2.11	0.88	2.5
Merged-chr17-80295431-1	chr17	80294931	80295931	+	572.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360440, intron 2 of 3)	intron (NM_001360440, intron 2 of 3)	-4955.0	NM_001163759	106794.0	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	2.29	3.23	0.0	6.07	2.33	4.82	5.28	1.77	4.37
Merged-chr6-96114499-1	chr6	96113999	96114999	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182808, intron 1 of 4)	intron (NM_182808, intron 1 of 4)	1345.0	NM_182808	320265.0	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	4.0	4.61	1.85	10.8	10.26	14.47	7.39	6.19	6.25
Merged-chr2-72244529-1	chr2	72244029	72245029	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355478, intron 25 of 26)	intron (NM_001355478, intron 25 of 26)	-41108.0	NM_023057	65964.0	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	4.58	5.07	5.55	0.67	1.87	1.61	6.34	1.33	3.75
Merged-chr2-125214770-1	chr2	125214270	125215270	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079690, intron 22 of 27)	intron (NM_001079690, intron 22 of 27)	-32478.0	NM_001159646	110074.0	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	2.29	5.07	0.0	2.02	5.6	0.0	1.06	1.77	1.25
Merged-chr2-128764247-1	chr2	128763747	128764747	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 8 of 18)	intron (NM_008587, intron 8 of 18)	-54056.0	NM_001355628	72477.0	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	26.89	17.97	34.22	20.92	24.72	14.47	28.52	16.8	10.62
Merged-chr18-56567124-1	chr18	56566624	56567624	+	572.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	4555.0	NM_001162989	56698.0	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	4.0	11.06	3.7	11.47	12.6	18.49	17.96	11.94	18.11
Merged-chr4-33018519-3	chr4	33018028	33019028	+	571.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027491, intron 6 of 6)	intron (NM_027491, intron 6 of 6)	12795.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.0	2.76	5.55	1.35	1.4	7.23	2.11	3.1	1.25
Merged-chr2-155624967-1	chr2	155624467	155625467	+	571.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085378, intron 21 of 41)	intron (NM_001085378, intron 21 of 41)	2087.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.57	0.92	3.7	0.67	0.0	3.22	2.11	0.0	3.75
Merged-chr16-21631832-2	chr16	21631319	21632319	+	571.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081366, intron 45 of 46)	intron (NM_001081366, intron 45 of 46)	62846.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	37.76	37.32	61.05	45.88	38.25	97.26	46.47	40.24	59.95
Merged-chr11-97547243-1	chr11	97546743	97547743	+	571.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	27883.0	NM_018873	56013.0	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	22.88	3.69	16.65	8.77	4.2	8.84	24.29	10.17	11.24
Merged-chr17-71874314-1	chr17	71873814	71874814	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007439, intron 27 of 28)	intron (NM_007439, intron 27 of 28)	92367.0	NM_030179	78785.0	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	5.15	1.84	3.7	3.37	1.4	0.0	1.06	3.1	14.99
Merged-chr1-166844735-1	chr1	166844235	166845235	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	154995.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	3.43	0.0	2.77	4.72	0.93	1.61	5.28	7.52	7.49
Merged-chr2-18608370-1	chr2	18607870	18608870	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-64092.0	NM_147778	12238.0	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	1.72	1.84	0.0	8.77	1.4	4.82	11.62	2.65	1.25
Merged-chr4-87893167-2	chr4	87892661	87893661	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-86838.0	NM_029931	70122.0	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	16.59	20.74	12.95	15.52	14.46	14.47	43.3	46.43	14.99
Merged-chr2-79618772-1	chr2	79618272	79619272	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16653.0	NM_080558	70599.0	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	48.62	45.62	27.75	82.99	58.78	52.25	21.12	11.94	9.37
Merged-chr11-100640229-2	chr11	100639726	100640726	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177790, intron 1 of 7)	CpG	10467.0	NM_177790	278304.0	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	5.72	0.92	5.55	4.05	0.47	0.8	3.17	1.77	1.25
Merged-chr9-40548025-1	chr9	40547525	40548525	+	571.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16642.0	NM_001357617	235283.0	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	3.43	3.69	12.02	9.45	4.2	4.82	1.06	4.86	3.75
Merged-chr17-57172494-1	chr17	57171994	57172994	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	21687.0	NM_019418	50930.0	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	9.15	5.99	6.47	14.84	12.13	0.0	2.11	3.1	7.49
Merged-chr3-121536017-1	chr3	121535517	121536517	+	571.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3673.0	NM_145394	213603.0	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	2.86	1.38	0.0	4.72	1.4	1.61	5.28	1.77	4.37
Merged-chr14-51242991-2	chr14	51242464	51243464	+	571.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13148.0	NM_053113	93726.0	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	16.02	17.05	23.12	10.12	7.46	0.0	4.22	3.1	3.75
Merged-chr9-58226449-1	chr9	58225949	58226949	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008884, intron 6 of 7)	intron (NM_008884, intron 6 of 7)	5299.0	NR_105806	102466639.0		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	24.03	16.59	24.97	21.59	10.26	27.33	21.12	6.19	8.74
Merged-chr5-28419905-1	chr5	28419405	28420405	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028234)	TTS (NM_028234)	-47079.0	NR_015562	654796.0	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	4.0	2.76	1.85	0.67	2.33	6.43	2.11	1.77	3.75
Merged-chr11-68092178-1	chr11	68091678	68092678	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_018768, intron 6 of 7)	intron (NM_018768, intron 6 of 7)	125720.0	NM_018768	55943.0	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	5.72	5.99	0.0	5.4	2.33	3.22	4.22	3.54	1.25
Merged-chr8-123982390-1	chr8	123981890	123982890	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019552, intron 1 of 12)	intron (NM_019552, intron 1 of 12)	732.0	NM_019552	56199.0	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	13.16	7.83	8.32	13.49	8.86	16.08	8.45	3.98	6.25
Merged-chr6-73247679-1	chr6	73247179	73248179	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_019879)	promoter-TSS (NM_019879)	-826.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	12.01	13.36	14.8	11.47	12.6	8.04	20.07	25.2	15.61
Merged-chr11-60186208-1	chr11	60185708	60186708	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009021, exon 3 of 6)	exon (NM_009021, exon 3 of 6)	14409.0	NR_105886	102465555.0		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.57	0.46	0.0	2.02	1.4	0.0	1.06	0.0	0.62
Merged-chr5-123129131-1	chr5	123128631	123129631	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175092, intron 2 of 4)	intron (NM_175092, intron 2 of 4)	3498.0	NM_175092	23912.0	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	11.44	6.91	14.8	15.52	3.73	8.04	12.67	7.96	8.12
Merged-chr5-113035907-1	chr5	113035407	113036407	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20369.0	NM_177078	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	18.31	7.83	18.5	7.42	5.13	3.22	10.56	4.42	3.75
Merged-chr12-73111966-1	chr12	73111466	73112466	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362272, intron 2 of 2)	CpG	1279.0	NM_011382	20474.0	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	1.14	2.76	1.85	3.37	2.33	0.0	4.22	0.0	0.62
Merged-chr13-58479348-1	chr13	58478848	58479848	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-76005.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	45.19	37.78	37.0	55.33	58.31	49.03	45.42	46.43	20.61
Merged-chr16-24150698-1	chr16	24150198	24151198	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-68008.0	NR_155457	108168278.0	Mm.417246	NR_155457		Gm46545	-	predicted gene, 46545	ncRNA	8.58	1.84	0.0	6.07	0.93	3.22	2.11	2.21	1.87
Merged-chr9-62952885-1	chr9	62952385	62953385	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019663, intron 1 of 13)	intron (NM_019663, intron 1 of 13)	27994.0	NM_019663	56469.0	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	19.45	25.34	11.1	21.59	17.26	15.27	19.01	11.94	11.24
Merged-chr7-127129196-1	chr7	127128696	127129696	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-7167.0	NM_133686	67375.0	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	12.59	5.99	13.87	15.52	8.4	19.29	36.97	31.39	23.73
Merged-chr4-33241414-1	chr4	33240914	33241914	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	7373.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	5.72	9.22	6.47	6.07	5.6	7.23	5.28	3.54	7.49
Merged-chr18-11676777-1	chr18	11676277	11677277	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045527, intron 3 of 17)	PB1D9|SINE|Alu	19428.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	24.6	50.23	51.8	16.19	17.73	26.53	33.8	42.01	42.47
Merged-chr11-78627451-1	chr11	78626951	78627951	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008702, intron 1 of 10)	intron (NM_008702, intron 1 of 10)	69974.0	NM_008702	18099.0	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.57	4.61	0.92	7.42	5.13	0.0	6.34	3.1	0.62
Merged-chr6-133973421-1	chr6	133972921	133973921	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62279.0	NM_001303102	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.86	1.84	3.7	6.75	2.8	1.61	6.34	0.44	4.37
Merged-chr10-30771780-1	chr10	30771280	30772280	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001358841, exon 2 of 16)	5' UTR (NM_001358841, exon 2 of 16)	31546.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	50.34	63.59	49.95	60.05	72.31	83.59	53.87	42.89	38.1
Merged-chr7-80530924-1	chr7	80530424	80531424	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001042527, intron 1 of 21)	intron (NM_001042527, intron 1 of 21)	4074.0	NM_007550	12144.0	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ like helicase	protein-coding	2.86	4.61	7.4	7.42	10.26	3.22	6.34	7.52	4.37
Merged-chr6-31073241-1	chr6	31072741	31073741	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10148.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	7.44	2.3	3.7	10.12	6.53	7.23	5.28	5.31	4.37
Merged-chr6-116675032-2	chr6	116674526	116675526	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1190.0	NM_178045	213391.0	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	89.81	100.91	74.92	56.0	57.85	112.53	74.99	88.88	80.56
Merged-chr1-64527770-1	chr1	64527270	64528270	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5034.0	NM_009952	12912.0	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	3.43	4.61	0.0	10.12	1.87	3.22	7.39	2.21	1.25
Merged-chr8-123117341-1	chr8	123116841	123117841	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_170684)	promoter-TSS (NM_170684)	-33.0	NM_170684	102278.0	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	4.0	2.76	5.55	7.42	1.4	0.0	4.22	0.44	0.0
Merged-chr11-97641911-1	chr11	97641411	97642411	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-12195.0	NM_175332	103551.0	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	5.72	3.69	5.55	4.72	0.93	0.8	6.34	4.86	5.0
Merged-chr4-105258313-1	chr4	105257813	105258813	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	100966.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	7.44	5.07	0.0	5.4	4.67	3.22	3.17	1.33	1.25
Merged-chr17-45478657-1	chr17	45478157	45479157	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3719.0	NM_001357831	71020.0	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	7.44	0.0	0.0	2.02	0.93	3.22	2.11	2.21	1.25
Merged-chr19-45737051-1	chr19	45736551	45737551	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010205, exon 5 of 5)	exon (NM_010205, exon 5 of 5)	5833.0	NM_001166361	14179.0	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	4.0	0.92	1.85	3.37	1.4	2.41	2.11	2.21	9.99
Merged-chr17-66519357-1	chr17	66518857	66519857	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_024448, exon 1 of 6)	exon (NM_024448, exon 1 of 6)	313.0	NM_024448	19328.0	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	209.94	158.97	154.47	152.49	109.16	115.75	204.9	132.21	79.32
Merged-chr1-191177027-1	chr1	191176527	191177527	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	6306.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	12.59	1.38	5.55	14.17	4.2	6.43	3.17	1.33	4.37
Merged-chr19-16382559-1	chr19	16382059	16383059	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008139, intron 6 of 6)	MTD|LTR|ERVL-MaLR	-53108.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	8.01	6.45	21.27	13.49	6.53	9.65	14.79	9.29	2.5
Merged-chr1-132416842-1	chr1	132416342	132417342	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172516)	promoter-TSS (NM_172516)	-611.0	NM_172516	213452.0	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	29.75	51.15	47.17	40.48	38.25	49.83	55.98	28.74	37.47
Merged-chr14-20804482-1	chr14	20803982	20804982	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10243.0	NR_153779	102631887.0	Mm.122292	NR_153779	ENSMUSG00000114241	Gm30108	-	predicted gene, 30108	ncRNA	10.3	11.98	11.1	31.04	20.99	23.31	23.24	13.27	11.87
Merged-chr4-117191430-1	chr4	117190930	117191930	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8806.0	NM_134471	73804.0	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	16.59	13.36	9.25	128.87	115.69	77.16	14.79	7.96	8.74
Merged-chr9-22259830-1	chr9	22259330	22260330	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181419)	promoter-TSS (NM_181419)	65.0	NM_181419	235048.0	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	2.29	0.46	0.0	4.72	4.2	4.82	2.11	1.33	3.75
Merged-chr13-73263634-1	chr13	73263134	73264134	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018885, intron 1 of 5)	intron (NM_018885, intron 1 of 5)	3137.0	NM_018885	50916.0	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois homeobox 4	protein-coding	6.86	5.53	7.4	2.7	4.2	6.43	5.28	0.0	0.0
Merged-chr7-19443646-1	chr7	19443146	19444146	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172279, intron 7 of 16)	intron (NM_172279, intron 7 of 16)	14848.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	5.15	2.76	5.55	6.07	0.47	8.04	4.22	4.86	0.0
Merged-chr13-59666611-1	chr13	59666111	59667111	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	intron (NM_001035122, intron 1 of 9)	9173.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	9.15	4.61	1.85	10.12	5.6	6.43	5.28	5.75	4.37
Merged-chr9-41182732-1	chr9	41182232	41183232	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23423.0	NR_040392	78500.0	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	4.0	5.07	0.0	3.37	5.13	1.61	5.28	4.86	5.0
Merged-chr4-95141529-1	chr4	95141029	95142029	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-89307.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	8.58	3.23	0.92	9.45	2.8	6.43	3.17	6.19	1.87
Merged-chr15-102462152-1	chr15	102461652	102462652	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025385, intron 4 of 4)	intron (NM_025385, intron 4 of 4)	2982.0	NM_025385	66151.0	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	14.87	11.98	5.55	14.84	6.53	19.29	21.12	12.82	9.99
Merged-chr8-11002831-1	chr8	11002331	11003331	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-5019.0	NR_046017	619321.0	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	1.72	1.84	2.77	12.14	2.8	4.82	0.0	3.54	5.0
Merged-chr10-79797764-1	chr10	79797264	79798264	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023128, intron 1 of 8)	intron (NM_023128, intron 1 of 8)	4192.0	NM_001161747	18483.0	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	2.29	5.99	3.7	7.42	8.86	20.9	24.29	13.71	29.98
Merged-chr10-52294271-1	chr10	52293771	52294771	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025705, intron 5 of 10)	MLT1E1|LTR|ERVL-MaLR	60652.0	NM_025705	66686.0	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	5.72	10.14	1.85	22.27	6.53	3.22	9.51	9.29	8.74
Merged-chr17-48192979-1	chr17	48192479	48193479	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25722.0	NM_178796	328830.0	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	10.3	3.69	3.7	6.07	3.73	4.82	8.45	4.42	0.62
Merged-chr2-118746417-1	chr2	118745917	118746917	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001301269, exon 1 of 1)	exon (NM_001301269, exon 1 of 1)	659.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	31.46	11.52	22.2	20.24	14.0	20.9	17.96	9.73	13.12
Merged-chr11-83298361-1	chr11	83297861	83298861	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_134025, exon 2 of 4)	exon (NM_134025, exon 2 of 4)	616.0	NM_134025	103737.0	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	304.33	273.71	228.46	334.66	307.9	203.36	251.37	257.78	133.65
Merged-chr7-98688837-1	chr7	98688337	98689337	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_144495, exon 1 of 1)	non-coding (NR_144495, exon 1 of 1)	14091.0	NR_144495	100040769.0	Mm.126401	NR_144495		Gm15506	-	predicted gene 15506	ncRNA	1.14	1.84	2.77	3.37	2.33	6.43	6.34	7.96	3.75
Merged-chr1-162004666-1	chr1	162004166	162005166	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040562)	promoter-TSS (NR_040562)	-303.0	NR_040562	72753.0	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	52.06	45.16	48.1	29.69	20.53	24.11	114.07	91.09	49.96
Merged-chr18-61101579-1	chr18	61101079	61102079	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB5|LINE|L1	-3993.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	5.15	6.45	7.4	12.14	7.0	12.86	10.56	10.17	6.87
Merged-chr19-56599505-1	chr19	56599005	56600005	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_025811)	TTS (NM_025811)	51244.0	NM_025811	66866.0	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	58.92	65.43	55.5	48.58	58.31	51.44	31.69	35.37	28.73
Merged-chr18-75370605-1	chr18	75370105	75371105	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001042660, intron 1 of 3)	intron (NM_001042660, intron 1 of 3)	3240.0	NM_001042660	17131.0	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	18.88	26.73	30.52	29.01	23.79	38.58	54.92	38.47	28.1
Merged-chr11-24077555-1	chr11	24077055	24078055	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159289)	promoter-TSS (NM_001159289)	-501.0	NM_016707	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	1.14	0.46	1.85	1.35	2.8	2.41	0.0	0.88	1.25
Merged-chr17-84376130-1	chr17	84375630	84376630	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	90078.0	NM_183021	240174.0	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	10.3	11.06	4.62	7.42	6.06	0.0	4.22	1.33	5.0
Merged-chr6-128644181-1	chr6	128643681	128644681	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18204.0	NM_053165	94071.0	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	18.31	18.89	12.95	12.14	11.2	24.92	3.17	8.4	11.24
Merged-chr18-46446690-1	chr18	46446190	46447190	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19126.0	NR_045438	72076.0	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	24.03	23.04	0.92	26.31	18.66	13.66	31.69	14.15	8.74
Merged-chrX-60013311-1	chrX	60012811	60013811	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007979, intron 4 of 7)	B3|SINE|B2	13847.0	NM_001305797	14071.0	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	1.14	0.46	0.92	0.67	3.27	1.61	2.11	1.77	2.5
Merged-chr4-129504057-1	chr4	129503557	129504557	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9524.0	NM_010807	17357.0	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	10.3	10.14	5.55	2.7	4.67	3.22	3.17	3.54	7.49
Merged-chr11-103989090-1	chr11	103988590	103989590	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22219.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	106.4	99.07	98.97	12.14	9.8	11.25	13.73	7.52	14.99
Merged-chr2-165990736-1	chr2	165990236	165991236	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1901.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	14.3	11.06	11.1	13.49	8.4	22.51	14.79	20.34	19.36
Merged-chr13-47106547-1	chr13	47106047	47107047	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025900)	promoter-TSS (NM_025900)	-326.0	NM_025900	110052.0	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	129.28	90.77	89.72	105.93	84.9	104.49	130.97	79.59	64.95
Merged-chr4-41506407-1	chr4	41505907	41506907	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001253788, intron 4 of 5)	intron (NM_001253788, intron 4 of 5)	1357.0	NM_028624	73721.0	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	2.86	3.69	0.0	9.45	2.33	14.47	0.0	3.1	5.62
Merged-chr18-53158324-2	chr18	53157812	53158812	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17980.0	NM_001357463	67804.0	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	13.16	11.06	19.42	16.19	6.53	16.88	20.07	13.71	16.86
Merged-chr1-151579978-1	chr1	151579478	151580478	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	G-rich|Low_complexity|Low_complexity	8605.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	6.29	6.45	24.97	18.22	9.8	20.9	12.67	10.17	9.99
Merged-chr18-37694418-1	chr18	37693918	37694918	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033588)	promoter-TSS (NM_033588)	-83.0	NM_033588	93713.0	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	1.72	4.61	1.85	3.37	0.47	2.41	3.17	2.65	1.25
Merged-chr5-114006311-1	chr5	114005811	114006811	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286396, intron 1 of 10)	intron (NM_001286396, intron 1 of 10)	1503.0	NM_001286396	13142.0	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	10.3	2.76	2.77	1.35	0.93	0.0	1.06	0.0	5.0
Merged-chr19-10278011-1	chr19	10277511	10278511	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26866.0	NM_198114	269060.0	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	70.36	62.67	42.55	102.56	88.64	83.59	34.85	56.16	13.12
Merged-chr5-110781836-1	chr5	110781336	110782336	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1221.0	NM_001025562	56361.0	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	9.15	8.29	12.95	6.75	7.0	19.29	10.56	6.19	12.49
Merged-chr19-29376531-1	chr19	29376031	29377031	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021893, intron 3 of 6)	intron (NM_021893, intron 3 of 6)	9093.0	NM_021893	60533.0	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	8.01	4.61	17.57	2.02	4.67	8.84	8.45	8.4	3.75
Merged-chr18-36540779-2	chr18	36540272	36541272	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001271546, exon 20 of 22)	exon (NM_001271546, exon 20 of 22)	12620.0	NM_001271545	240215.0	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	8.58	5.53	5.55	11.47	9.33	6.43	6.34	14.59	13.12
Merged-chr2-143988956-2	chr2	143988446	143989446	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_024281, exon 2 of 24)	exon (NM_024281, exon 2 of 24)	22317.0	NM_133626	81910.0	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	6.29	3.69	19.42	10.8	1.4	17.68	16.9	2.65	6.25
Merged-chr11-116014710-1	chr11	116014210	116015210	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1991.0	NM_016905	14635.0	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	10.3	4.15	1.85	4.72	4.2	0.0	1.06	1.77	6.87
Merged-chr8-103923297-1	chr8	103922797	103923797	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-178328.0	NM_009868	12562.0	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	8.58	3.23	0.0	6.07	3.73	9.65	1.06	1.33	2.5
Merged-chr11-54201447-1	chr11	54200947	54201947	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045506, intron 2 of 2)	intron (NR_045506, intron 2 of 2)	11841.0	NR_045506	71056.0	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	5.72	4.61	2.77	2.02	2.33	0.0	8.45	8.4	1.25
Merged-chrX-117769616-1	chrX	117769116	117770116	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-657611.0	NM_001142750	100039551.0	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	10.87	2.3	1.85	8.1	7.93	4.82	4.22	9.73	7.49
Merged-chr9-21225346-1	chr9	21224846	21225846	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13986.0	NM_016679	50868.0	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	1.72	1.38	0.0	6.07	2.8	3.22	7.39	1.33	4.37
Merged-chr7-36696590-1	chr7	36696090	36697090	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-1528.0	NM_172298	243931.0	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	5.72	1.38	1.85	2.02	4.2	8.04	24.29	18.57	20.61
Merged-chr12-76903897-1	chr12	76903397	76904397	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145927, intron 7 of 11)	MTE2a|LTR|ERVL-MaLR	58351.0	NM_008558	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	4.58	4.15	11.1	7.42	6.53	11.25	11.62	4.86	8.74
Merged-chr8-70778796-1	chr8	70778296	70779296	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_199308, exon 26 of 26)	3' UTR (NM_199308, exon 26 of 26)	1934.0	NR_029440	72093.0	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	7.44	5.53	10.17	10.12	6.06	4.02	8.45	1.33	8.12
Merged-chr14-47515800-1	chr14	47515300	47516300	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027414, intron 4 of 5)	L1MC5|LINE|L1	43239.0	NM_001146085	78938.0	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	45.19	64.51	60.12	33.06	38.72	39.39	66.54	88.43	61.2
Merged-chr11-70247674-1	chr11	70247174	70248174	+	571.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007440, intron 8 of 13)	intron (NM_007440, intron 8 of 13)	7696.0	NM_001331118	11684.0	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	5.15	3.23	3.7	1.35	1.4	9.65	6.34	3.54	7.49
Merged-chr2-32134208-3	chr2	32133689	32134689	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16959.0	NM_172661	227723.0	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	4.58	7.83	2.77	5.4	0.93	2.41	10.56	2.21	5.62
Merged-chr7-48937657-1	chr7	48937157	48938157	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21416.0	NM_001111016	78286.0	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	9.72	4.15	3.7	4.05	3.73	1.61	3.17	0.0	3.12
Merged-chr2-122137985-1	chr2	122137485	122138485	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_026251, intron 2 of 17)	intron (NM_026251, intron 2 of 17)	-9702.0	NM_009735	12010.0	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	14.87	4.15	12.95	4.72	4.2	0.0	6.34	7.07	3.75
Merged-chr7-121754961-1	chr7	121754461	121755461	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011326, intron 6 of 12)	intron (NM_011326, intron 6 of 12)	20482.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	2.29	0.92	0.92	0.67	2.33	1.61	2.11	2.65	1.25
Merged-chr6-3428303-1	chr6	3427803	3428803	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28732.0	NM_010156	209086.0	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	1.14	5.99	6.47	1.35	1.4	8.84	6.34	0.0	5.0
Merged-chr2-3285122-1	chr2	3284622	3285622	+	571.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008708, intron 1 of 13)	intron (NM_008708, intron 1 of 13)	910.0	NM_001290370	18108.0	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	29.17	29.95	22.2	37.78	29.86	25.72	46.47	32.28	18.11
Merged-chr4-63686304-2	chr4	63685804	63686804	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	51883.0	NR_151544	102632940.0	Mm.399154	NR_151544	ENSMUSG00000086817	Gm11482	-	predicted gene 11482	ncRNA	3.43	0.92	3.7	5.4	4.67	3.22	3.17	2.65	1.87
Merged-chr1-131439238-1	chr1	131438738	131439738	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	88123.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	69.79	70.04	44.4	50.6	53.18	62.7	54.92	76.05	51.21
Merged-chr7-24445686-1	chr7	24445186	24446186	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_199013)	promoter-TSS (NM_199013)	-4.0	NM_199013	210145.0	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	3.43	3.69	3.7	3.37	1.4	4.82	3.17	3.1	2.5
Merged-chr1-191718842-1	chr1	191718342	191719342	+	571.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001134829, intron 1 of 7)	CpG	447.0	NM_001134829	226856.0	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	23.45	7.83	21.27	8.1	8.86	10.45	17.96	4.86	3.75
Merged-chr17-45691714-3	chr17	45691198	45692198	+	570.833313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	5349.0	NM_026732	68463.0	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	8.01	7.37	11.1	10.8	3.27	1.61	13.73	7.52	7.49
Merged-chr17-84719304-1	chr17	84718804	84719804	+	570.75	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028233, intron 30 of 37)	intron (NM_028233, intron 30 of 37)	36183.0	NM_026180	67470.0	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	8.58	4.15	12.02	8.1	4.67	11.25	3.17	9.29	6.87
Merged-chr18-56723000-1	chr18	56722500	56723500	+	570.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	15187.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.86	2.3	1.85	2.02	2.8	8.04	4.22	6.63	8.74
Merged-chr10-21804514-1	chr10	21804014	21805014	+	570.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-77670.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	9.72	14.28	1.85	20.24	20.53	6.43	30.63	32.72	9.99
Merged-chr15-76312869-1	chr15	76312369	76313369	+	570.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-5624.0	NM_153122	75475.0	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	85.24	71.42	107.29	83.66	70.91	113.33	79.21	59.25	59.33
Merged-chr18-61324260-2	chr18	61323744	61324744	+	570.625	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	73656.0	NR_029879	723889.0		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	7.44	3.23	10.17	3.37	4.67	5.63	11.62	16.36	12.49
Merged-chr3-83053966-2	chr3	83053484	83054484	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1554.0	NM_016784	53317.0	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	3.43	2.76	3.7	0.67	6.53	0.0	0.0	6.19	2.5
Merged-chr7-120128260-2	chr7	120127758	120128758	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1D|LTR|ERVL-MaLR	17033.0	NM_011775	22787.0	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	2.29	2.3	3.7	4.05	1.4	5.63	3.17	1.77	5.0
Merged-chr4-48225281-1	chr4	48224781	48225781	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355184, intron 3 of 10)	intron (NM_001355184, intron 3 of 10)	-12066.0	NR_035484	100316708.0		NR_035484	ENSMUSG00000087844	Mir1958	mmu-mir-1958	microRNA 1958	ncRNA	10.3	8.75	2.77	4.05	9.33	9.65	14.79	12.82	0.62
Merged-chr10-62726085-1	chr10	62725585	62726585	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033260)	promoter-TSS (NM_001033260)	14.0	NM_001033260	216021.0	Mm.39821	NM_001033260	ENSMUSG00000036923	Stox1	4732470K04Rik|Gm63	storkhead box 1	protein-coding	5.15	2.3	0.0	1.35	0.93	0.0	2.11	0.88	0.0
Merged-chr12-83705998-2	chr12	83705555	83706555	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362271, intron 3 of 11)	intron (NM_001362271, intron 3 of 11)	17492.0	NM_008943	19164.0	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	28.6	22.58	30.52	21.59	27.52	30.54	39.08	24.32	21.23
Merged-chr18-36208846-2	chr18	36208347	36209347	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11687.0	NM_001167891	100042150.0	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	4.0	2.3	3.7	5.4	0.47	1.61	5.28	3.54	4.37
Merged-chr5-93117799-1	chr5	93117299	93118299	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	24383.0	NM_001347377	52398.0	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	5.72	1.84	3.7	0.67	2.33	4.82	2.11	1.33	4.37
Merged-chr8-77433352-2	chr8	77432847	77433847	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 3 of 22)	intron (NM_030113, intron 3 of 22)	-83709.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	16.02	10.14	1.85	10.12	7.0	6.43	6.34	3.1	2.5
Merged-chr18-46564981-1	chr18	46564481	46565481	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9552.0	NM_173394	225471.0	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	8.58	6.91	20.35	9.45	5.13	10.45	11.62	16.36	14.36
Merged-chr17-56897878-1	chr17	56897378	56898378	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022328, intron 6 of 11)	intron (NM_022328, intron 6 of 11)	22245.0	NM_030141	78625.0	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	3.43	0.46	4.62	9.45	1.87	1.61	5.28	0.88	2.5
Merged-chr5-122703008-2	chr5	122702521	122703521	+	570.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-4523.0	NM_001310720	18438.0	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	101.83	76.95	54.57	120.77	53.65	73.14	122.52	126.46	85.56
Merged-chr2-181392766-2	chr2	181392296	181393296	+	570.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027656, intron 3 of 3)	intron (NM_027656, intron 3 of 3)	8546.0	NR_045164	329584.0	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462	Slc2a4 regulator, pseudogene	pseudo	1.14	2.3	1.85	6.07	4.2	3.22	2.11	5.75	2.5
Merged-chr16-84627291-1	chr16	84626791	84627791	+	570.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52498.0	NR_040537	78023.0	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	2.86	2.76	0.92	4.72	2.8	3.22	3.17	0.88	1.25
Merged-chr13-33003684-2	chr13	33003161	33004161	+	570.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009256)	promoter-TSS (NM_009256)	-880.0	NM_009256	20723.0	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	56.63	71.88	80.47	57.35	59.25	36.17	104.56	108.77	40.59
Merged-chrX-164092962-1	chrX	164092462	164093462	+	570.333313	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313719, intron 1 of 3)	intron (NM_001313719, intron 1 of 3)	773.0	NM_001313719	57394.0	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	2.29	5.99	1.85	6.07	6.53	3.22	7.39	6.63	3.12
Merged-chr4-133198916-3	chr4	133198469	133199469	+	570.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_153423)	TTS (NM_153423)	3314.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	15.45	8.75	26.82	9.45	6.53	14.47	7.39	3.54	1.87
Merged-chr13-64448192-1	chr13	64447692	64448692	+	570.25	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15639.0	NM_053180	105278.0	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	5.15	8.75	0.0	1.35	0.93	1.61	4.22	1.77	3.75
Merged-chr6-122834548-2	chr6	122834018	122835018	+	570.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021899, intron 6 of 10)	ID4|SINE|ID	3141.0	NR_106090	102465710.0		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	7.44	5.07	4.62	4.72	5.6	3.22	8.45	7.07	2.5
Merged-chr12-86263002-1	chr12	86262502	86263502	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027405, intron 5 of 9)	intron (NM_027405, intron 5 of 9)	21144.0	NM_001324488	70373.0	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	14.87	19.81	37.0	23.62	10.26	16.08	35.91	28.74	28.1
Merged-chr13-4666970-2	chr13	4666490	4667490	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-57826.0	NM_018859	56043.0	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	5.15	1.84	0.0	3.37	2.33	3.22	4.22	3.54	4.37
Merged-chr12-34586575-1	chr12	34586075	34587075	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-57686.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	6.86	8.29	7.4	6.07	6.06	5.63	5.28	4.86	1.87
Merged-chr17-17447986-1	chr17	17447486	17448486	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025681, intron 4 of 5)	MIR|SINE|MIR	45300.0	NM_025681	66643.0	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	10.87	8.75	2.77	9.45	6.06	8.84	9.51	10.17	8.74
Merged-chr10-80670204-1	chr10	80669704	80670704	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021462, intron 5 of 13)	intron (NM_021462, intron 5 of 13)	6089.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	7.44	2.3	0.0	4.72	3.27	8.04	3.17	0.88	6.25
Merged-chr2-91083876-1	chr2	91083376	91084376	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12802.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	276.3	305.04	225.69	263.81	198.73	233.9	284.11	298.91	207.97
Merged-chr8-70905953-1	chr8	70905453	70906453	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_173013)	promoter-TSS (NM_173013)	-21.0	NM_173013	270058.0	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	57.21	51.61	95.27	50.6	41.99	106.1	87.66	52.18	59.33
Merged-chr3-96238331-3	chr3	96237848	96238848	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_178216)	TTS (NM_178216)	779.0	NM_054045	97114.0	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	10.3	5.07	1.85	8.1	8.4	4.82	7.39	9.29	3.75
Merged-chr12-3308484-2	chr12	3308017	3309017	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016676, intron 1 of 5)	intron (NM_016676, intron 1 of 5)	1452.0	NM_016676	19325.0	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	78.94	124.87	67.52	68.82	64.84	58.68	138.36	118.94	79.32
Merged-chr2-10351349-1	chr2	10350849	10351849	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19102.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	4.58	0.92	3.7	0.67	3.73	0.0	3.17	0.0	5.0
Merged-chr11-115248229-1	chr11	115247729	115248729	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010350)	TTS (NM_010350)	19014.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	4.0	0.92	2.77	8.77	5.13	2.41	10.56	3.98	5.0
Merged-chr8-34762931-1	chr8	34762431	34763431	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44679.0	NM_176933	319520.0	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.29	4.15	0.0	0.0	1.4	0.0	5.28	0.44	1.25
Merged-chr2-33432373-2	chr2	33431867	33432867	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1043.0	NM_001276332	241311.0	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	31.46	29.49	38.85	17.54	19.13	36.17	27.46	32.28	19.36
Merged-chr2-6081361-1	chr2	6080861	6081861	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER63D|DNA|hAT-Blackjack	48824.0	NM_144883	227545.0	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.0	2.3	1.85	3.37	2.33	8.04	1.06	2.65	2.5
Merged-chr3-59079482-1	chr3	59078982	59079982	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 10 of 43)	intron (NM_177855, intron 10 of 43)	22339.0	NM_173398	229323.0	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	1.14	1.38	0.0	2.7	1.87	1.61	5.28	0.88	8.74
Merged-chr19-10895981-1	chr19	10895481	10896481	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134129, intron 1 of 15)	intron (NM_134129, intron 1 of 15)	750.0	NM_001253843	28000.0	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	40.62	50.69	51.8	64.1	59.25	35.37	53.87	63.67	45.59
Merged-chr10-117675808-1	chr10	117675308	117676308	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027468, intron 6 of 8)	intron (NM_027468, intron 6 of 8)	34950.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	1.14	2.3	6.47	6.07	7.0	1.61	3.17	3.98	5.0
Merged-chr17-56023203-1	chr17	56022703	56023703	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13434.0	NM_013664	20405.0	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	34.9	23.04	27.75	39.13	20.99	41.8	32.74	11.5	17.49
Merged-chr14-33851613-1	chr14	33851113	33852113	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40330.0	NR_131113	218902.0	Mm.107791	NR_131113	ENSMUSG00000115751	4930503F20Rik	4930453C15	RIKEN cDNA 4930503F20 gene	ncRNA	2.29	5.53	5.55	6.75	2.8	8.04	8.45	4.42	11.87
Merged-chr14-109641844-1	chr14	109641344	109642344	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-727605.0	NM_199065	76965.0	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	1.14	5.99	3.7	2.7	7.93	0.0	6.34	6.19	0.0
Merged-chr2-181364905-1	chr2	181364405	181365405	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_144894)	promoter-TSS (NM_144894)	-26.0	NM_144894	229007.0	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	112.69	114.74	98.05	105.93	90.04	90.83	129.91	109.22	51.21
Merged-chr10-88679312-1	chr10	88678812	88679812	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011461, intron 3 of 5)	B4A|SINE|B4	3711.0	NM_011461	20728.0	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	25.74	23.5	23.12	18.22	12.6	20.9	12.67	13.71	9.99
Merged-chr1-97571259-1	chr1	97570759	97571759	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	90417.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.58	8.29	5.55	0.67	3.27	4.02	5.28	6.63	3.75
Merged-chr2-35661821-1	chr2	35661321	35662321	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290637, intron 3 of 16)	CpG-8041	-30173.0	NM_001001602	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	2.29	1.84	0.0	0.67	1.87	4.82	4.22	1.33	3.75
Merged-chr6-54948356-1	chr6	54947856	54948856	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 2 of 11)	intron (NM_001171007, intron 2 of 11)	23305.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	78.94	100.91	120.24	74.89	88.17	92.44	87.66	107.45	74.94
Merged-chr2-122743649-1	chr2	122743149	122744149	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019788, intron 2 of 4)	intron (NM_019788, intron 2 of 4)	5144.0	NM_019788	18457.0	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	14.87	35.94	24.05	31.04	12.13	14.47	24.29	18.57	6.87
Merged-chr16-87738192-1	chr16	87737692	87738692	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39238.0	NM_007520	12013.0	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	1.14	1.38	8.32	7.42	0.47	6.43	2.11	0.0	2.5
Merged-chr8-71297930-1	chr8	71297430	71298430	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142322, intron 2 of 39)	MTD|LTR|ERVL-MaLR	25216.0	NM_001142323	17925.0	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	86.95	89.85	71.22	77.59	77.44	104.49	65.48	61.9	33.1
Merged-chr1-136661125-1	chr1	136660625	136661625	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-22271.0	NR_045324	100503460.0	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	16.02	5.53	9.25	8.77	6.53	6.43	15.84	5.31	9.99
Merged-chr13-119614722-1	chr13	119614222	119615222	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9097.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	12.01	9.22	17.57	20.92	24.72	24.92	7.39	9.29	6.87
Merged-chr11-75131507-1	chr11	75131007	75132007	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	36645.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	4.0	8.75	3.7	10.12	18.66	17.68	6.34	3.1	5.0
Merged-chr17-5560308-1	chr17	5559808	5560808	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	67708.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	10.3	11.06	14.8	16.87	14.46	24.11	9.51	7.96	21.86
Merged-chr9-88692438-1	chr9	88691938	88692938	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359992, intron 2 of 2)	intron (NM_001359992, intron 2 of 2)	27149.0	NM_001359992	100039707.0	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	1.14	1.84	0.0	2.02	3.73	8.04	1.06	1.77	0.0
Merged-chr1-52129965-1	chr1	52129465	52130465	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205313, intron 5 of 24)	intron (NM_001205313, intron 5 of 24)	10343.0	NM_001205313	20846.0	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	3.43	9.68	16.65	7.42	2.33	6.43	15.84	5.75	2.5
Merged-chr8-25192077-1	chr8	25191577	25192577	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177089, intron 2 of 12)	intron (NM_177089, intron 2 of 12)	9465.0	NM_199323	320165.0	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	9.15	5.07	6.47	6.75	4.2	11.25	6.34	4.42	6.87
Merged-chr6-38940363-1	chr6	38939863	38940863	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011539, intron 1 of 12)	intron (NM_011539, intron 1 of 12)	21377.0	NM_011539	21391.0	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	204.8	178.32	178.52	189.6	102.63	122.98	190.11	183.94	104.92
Merged-chr1-120083376-1	chr1	120082876	120083876	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9596.0	NM_019432	170706.0	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	9.15	3.23	5.55	4.05	2.8	4.82	5.28	2.65	4.37
Merged-chr16-91475130-1	chr16	91474630	91475630	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10026.0	NR_077219	100503120.0	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	35.47	21.66	16.65	37.78	13.53	32.15	1.06	4.86	6.25
Merged-chr9-44708609-1	chr9	44708109	44709109	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153537, intron 9 of 21)	CpG	26589.0	NM_153537	102693.0	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	2.86	2.76	5.55	2.7	3.27	3.22	2.11	1.33	2.5
Merged-chr9-71831919-1	chr9	71831419	71832419	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60317.0	NM_001304362	68178.0	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	1.72	3.23	1.85	6.07	2.33	0.0	0.0	1.77	3.75
Merged-chr16-30308921-1	chr16	30308421	30309421	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008148, exon 2 of 2)	exon (NM_008148, exon 2 of 2)	1860.0	NM_008148	14729.0	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	3.43	1.38	5.55	10.12	3.73	3.22	8.45	2.21	9.99
Merged-chr12-82469839-1	chr12	82469339	82470339	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-147086.0	NM_001310478	50779.0	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	13.16	5.07	7.4	12.14	10.26	11.25	13.73	7.52	3.75
Merged-chr2-49372189-1	chr2	49371689	49372689	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-79297.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	3.43	3.23	5.55	4.72	1.87	8.04	5.28	3.54	7.49
Merged-chr13-58696108-1	chr13	58695608	58696608	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	66203.0	NR_045469	67585.0	Mm.84751	NR_045469	ENSMUSG00000114384	4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	5.15	4.61	22.2	5.4	4.67	8.04	6.34	4.42	12.49
Merged-chr19-53774114-1	chr19	53773614	53774614	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001170847, intron 1 of 13)	intron (NM_001170847, intron 1 of 13)	96808.0	NM_001170847	73713.0	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	4.0	4.61	1.85	3.37	0.93	1.61	3.17	3.1	11.87
Merged-chr7-80741204-1	chr7	80740704	80741704	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016721, intron 18 of 37)	intron (NM_016721, intron 18 of 37)	-52327.0	NM_173863	70461.0	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	5.15	5.07	15.72	6.75	2.33	6.43	3.17	1.77	3.12
Merged-chr2-31767974-1	chr2	31767474	31768474	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	7801.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	51.48	54.83	71.22	39.81	39.65	54.66	39.08	35.82	27.48
Merged-chr4-141368274-2	chr4	141367786	141368786	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001085513)	promoter-TSS (NM_001085513)	94.0	NM_001085513	277743.0	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	2.29	3.23	0.92	2.02	1.87	0.0	1.06	1.77	3.75
Merged-chrX-14838907-1	chrX	14838407	14839407	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	272582.0	NR_033171	67395.0	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	10.87	11.98	7.4	14.17	9.8	19.29	11.62	11.05	13.74
Merged-chr16-17741085-1	chr16	17740585	17741585	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18138.0	NM_001040683	94112.0	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	4.0	2.76	2.77	6.07	4.2	8.04	5.28	3.1	1.25
Merged-chr17-33439330-1	chr17	33438830	33439830	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6431.0	NM_183282	69481.0	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	9.72	2.3	1.85	6.75	0.93	5.63	1.06	2.21	1.87
Merged-chr4-141302196-1	chr4	141301696	141302696	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010139, intron 1 of 16)	intron (NM_010139, intron 1 of 16)	975.0	NM_010139	13836.0	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	17.73	3.69	1.85	12.14	6.06	11.25	15.84	3.1	6.87
Merged-chr10-77251953-1	chr10	77251453	77252453	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7270.0	NR_026944	100169878.0	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	-	predicted gene 10941	ncRNA	2.86	1.38	5.55	3.37	1.4	3.22	3.17	0.88	1.25
Merged-chr2-146854514-1	chr2	146854014	146855014	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1375.0	NM_001033298	228730.0	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	5.15	7.37	5.55	5.4	5.6	4.82	4.22	1.33	1.87
Merged-chr10-68132381-1	chr10	68131881	68132881	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023598, intron 5 of 9)	intron (NM_023598, intron 5 of 9)	146345.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	2.86	5.53	12.95	7.42	6.06	12.06	9.51	3.1	12.49
Merged-chr5-122899739-1	chr5	122899239	122900239	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 12 of 22)	CpG	611.0	NM_013910	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	193.93	108.28	180.37	159.23	73.24	77.97	102.45	83.13	70.57
Merged-chr6-125640743-1	chr6	125640243	125641243	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 27 of 51)	intron (NM_011708, intron 27 of 51)	-49676.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	2.29	1.84	1.85	2.7	0.93	1.61	2.11	0.0	6.25
Merged-chr2-152368976-1	chr2	152368476	152369476	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001009948, exon 3 of 3)	3' UTR (NM_001009948, exon 3 of 3)	7590.0	NM_001009948	228777.0	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	5.15	2.3	4.62	4.72	0.47	0.0	1.06	0.0	6.25
Merged-chr11-94587560-1	chr11	94587060	94588060	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153807, intron 1 of 15)	ID_B1|SINE|B4	14226.0	NM_153807	264895.0	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	6.29	13.36	28.67	9.45	11.2	20.09	16.9	11.5	19.36
Merged-chr9-110676257-1	chr9	110675757	110676757	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	ID_B1|SINE|B4	19754.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	107.55	105.98	110.99	85.69	48.05	95.65	118.29	120.27	79.94
Merged-chr2-180347357-1	chr2	180346857	180347857	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12678.0	NM_008093	14464.0	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	3.43	0.92	0.0	1.35	0.93	3.22	1.06	1.33	4.37
Merged-chr6-28832077-1	chr6	28831577	28832577	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_138682)	promoter-TSS (NM_138682)	-330.0	NM_138682	192198.0	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	2.86	3.69	5.55	5.4	4.67	4.82	11.62	2.21	3.75
Merged-chr12-104069859-1	chr12	104069359	104070359	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8100.0	NR_002861	321018.0	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	3.43	1.84	6.47	2.02	3.73	3.22	4.22	2.65	3.75
Merged-chr17-43589998-1	chr17	43589498	43590498	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_045444, exon 1 of 3)	non-coding (NR_045444, exon 1 of 3)	1511.0	NR_045445	73504.0	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	4.58	4.15	7.4	5.4	7.46	4.82	2.11	8.4	6.25
Merged-chr19-3930765-1	chr19	3930265	3931265	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1049.0	NM_026316	67689.0	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	62.35	89.39	85.1	68.82	60.65	102.08	92.94	130.0	76.82
Merged-chr2-104491570-1	chr2	104491070	104492070	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010434, intron 1 of 15)	intron (NM_010434, intron 1 of 15)	2919.0	NM_010434	15259.0	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	9.72	10.14	7.4	10.8	9.33	4.82	10.56	6.63	6.25
Merged-chr1-40480217-1	chr1	40479717	40480717	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	14211.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	5.72	0.92	0.0	4.05	6.06	4.82	1.06	0.44	3.75
Merged-chr11-102930768-1	chr11	102930268	102931268	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	-5644.0	NM_197959	70218.0	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	4.0	2.76	0.0	0.67	3.27	4.82	6.34	3.54	0.0
Merged-chr6-32997028-1	chr6	32996528	32997528	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355667, intron 3 of 8)	intron (NM_001355667, intron 3 of 8)	63232.0	NM_001355667	66075.0	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	25.17	40.09	40.7	25.64	16.79	24.92	13.73	21.67	18.11
Merged-chr17-84082270-1	chr17	84081770	84082770	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045458, intron 2 of 5)	intron (NR_045458, intron 2 of 5)	3610.0	NR_045458	74473.0	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	20.59	21.2	33.3	13.49	11.2	8.84	47.53	53.94	24.98
Merged-chr15-30727321-1	chr15	30726821	30727821	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355502, intron 9 of 21)	RMER6A|LTR|ERVK	-311805.0	NR_045186	73784.0	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	1.14	3.69	3.7	0.67	1.4	4.82	1.06	2.21	1.25
Merged-chr14-30867279-1	chr14	30866779	30867779	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028839, intron 4 of 7)	intron (NM_028839, intron 4 of 7)	-11978.0	NM_181390	66175.0	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	6.86	4.15	14.8	5.4	2.33	1.61	3.17	3.1	1.25
Merged-chr5-35106201-1	chr5	35105701	35106701	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013587)	promoter-TSS (NM_013587)	-504.0	NM_013587	16976.0	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	22.31	14.28	20.35	28.34	23.79	28.94	22.18	23.88	21.23
Merged-chr9-20662470-1	chr9	20661970	20662970	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023371, intron 3 of 3)	intron (NM_023371, intron 3 of 3)	10340.0	NM_023371	23988.0	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	1.14	2.3	1.85	3.37	0.93	3.22	1.06	0.88	6.25
Merged-chr16-94559616-1	chr16	94559116	94560116	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10590.0	NM_007890	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	25.17	38.25	37.92	29.69	26.59	24.92	50.7	33.6	28.1
Merged-chr6-89340256-1	chr6	89339756	89340756	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008881, intron 9 of 31)	intron (NM_008881, intron 9 of 31)	22357.0	NM_008881	18844.0	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	13.73	8.75	12.02	8.77	12.13	24.11	20.07	10.17	6.25
Merged-chr3-86986693-1	chr3	86986193	86987193	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007640, exon 1 of 7)	exon (NM_007640, exon 1 of 7)	107.0	NR_038188	12480.0	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	6.29	9.68	7.4	14.17	6.53	5.63	4.22	4.42	8.12
Merged-chr8-120335545-1	chr8	120335045	120336045	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-107315.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	4.0	1.84	3.7	5.4	0.47	3.22	4.22	0.88	1.25
Merged-chr5-118514205-1	chr5	118513705	118514705	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46514.0	NM_001347445	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.43	4.15	0.0	4.72	5.6	4.82	2.11	4.42	3.75
Merged-chr14-50905451-1	chr14	50904951	50905951	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12196.0	NM_001166651	546611.0	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	4.0	3.69	15.72	4.05	1.87	6.43	2.11	3.1	5.62
Merged-chr4-117886340-1	chr4	117885840	117886840	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_033617, exon 3 of 8)	exon (NM_033617, exon 3 of 8)	989.0	NM_033617	114143.0	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	14.87	15.21	10.17	18.22	11.66	22.51	19.01	25.2	25.61
Merged-chr17-26099548-1	chr17	26099048	26100048	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4078.0	NM_019731	56520.0	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	20.59	8.75	9.25	3.37	2.33	2.41	3.17	0.88	2.5
Merged-chrX-151942709-1	chrX	151942209	151943209	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	29495.0	NR_029753	723947.0		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	3.43	2.76	3.7	3.37	3.73	7.23	4.22	0.0	1.25
Merged-chr9-121708921-1	chr9	121708421	121709421	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1468.0	NM_026794	26901.0	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	12.01	5.53	1.85	10.8	6.06	4.02	11.62	6.63	5.62
Merged-chr10-13982401-1	chr10	13981901	13982901	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358782, intron 1 of 9)	intron (NM_001358782, intron 1 of 9)	16022.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	108.69	112.43	103.59	101.21	110.1	92.44	176.38	191.9	106.17
Merged-chr2-104035092-1	chr2	104034592	104035592	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355505, intron 3 of 10)	intron (NM_001355505, intron 3 of 10)	-6731.0	NM_175161	70986.0	Mm.460738	NM_175161		4931422A03Rik	-	RIKEN cDNA 4931422A03 gene	protein-coding	6.29	2.3	3.7	3.37	2.8	1.61	1.06	2.65	2.5
Merged-chr2-129174601-1	chr2	129174101	129175101	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6072.0	NR_045264	100048701.0	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	-	expressed sequence AI847159	ncRNA	5.72	2.3	0.0	2.02	3.27	1.61	0.0	4.86	1.25
Merged-chr4-15959139-1	chr4	15958639	15959639	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013752, intron 1 of 15)	PB1D7|SINE|Alu	1172.0	NM_013752	27354.0	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	29.17	26.73	30.52	43.86	27.99	25.72	36.97	44.22	29.35
Merged-chr8-94180939-1	chr8	94180439	94181439	+	570.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_013602)	TTS (NM_013602)	1850.0	NM_013602	17748.0	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	29.75	16.59	4.62	24.96	13.06	8.04	14.79	8.84	6.87
Merged-chr9-47546328-1	chr9	47545828	47546828	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	15976.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	6.86	6.45	20.35	1.35	6.06	11.25	4.22	1.33	1.25
Merged-chr6-3509930-1	chr6	3509430	3510430	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167751, intron 2 of 26)	intron (NM_001167751, intron 2 of 26)	11537.0	NM_001167750	73288.0	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	4.0	7.37	1.85	4.05	4.2	0.0	0.0	3.1	0.0
Merged-chr5-36668748-1	chr5	36668248	36669248	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081232, intron 2 of 8)	RLTR26_Mus|LTR|ERVK	27273.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	7.44	11.06	13.87	18.89	7.46	25.72	14.79	3.1	9.37
Merged-chr2-27734515-1	chr2	27734015	27735015	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	23932.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	48.62	41.01	74.92	35.76	32.66	53.85	42.25	31.84	48.71
Merged-chr6-97444405-1	chr6	97443905	97444905	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	14881.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	56.63	62.67	32.37	48.58	49.92	72.34	55.98	45.54	43.09
Merged-chr8-123213791-1	chr8	123213291	123214291	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177279, intron 2 of 2)	intron (NM_177279, intron 2 of 2)	933.0	NM_177279	320869.0	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	9.15	3.69	5.55	14.17	7.46	2.41	1.06	3.98	5.62
Merged-chr1-53783146-1	chr1	53782646	53783646	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133810, intron 1 of 7)	PB1D9|SINE|Alu	2069.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	112.69	237.76	73.07	130.9	128.29	60.28	108.79	147.24	93.68
Merged-chr16-90694924-1	chr16	90694424	90695424	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32447.0	NM_025642	66578.0	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	4.0	2.76	5.55	4.72	3.73	4.02	4.22	3.1	1.25
Merged-chr10-95297238-1	chr10	95296738	95297738	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	26471.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	146.45	160.35	84.17	133.59	100.77	114.94	123.57	135.75	76.82
Merged-chr17-47676724-1	chr17	47676224	47677224	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198421, intron 4 of 6)	intron (NM_198421, intron 4 of 6)	-10886.0	NR_045945	100415787.0	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	5.72	0.0	0.0	8.77	1.4	3.22	3.17	0.44	1.25
Merged-chr16-95701068-1	chr16	95700568	95701568	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1339.0	NM_011809	23872.0	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	4.0	9.68	5.55	6.07	7.0	5.63	7.39	11.94	5.0
Merged-chrX-167276734-2	chrX	167276253	167277253	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12424.0	NM_001313760	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	24.6	27.65	11.1	20.92	17.26	19.29	16.9	15.48	12.49
Merged-chr13-95777403-1	chr13	95776903	95777903	+	570.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027711, intron 2 of 35)	intron (NM_027711, intron 2 of 35)	80483.0	NM_010170	14064.0	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	4.58	4.61	3.7	1.35	2.8	8.04	4.22	1.33	5.0
Merged-chr3-39182969-1	chr3	39182469	39183469	+	570.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	296029.0	NM_183221	329628.0	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	1.14	1.84	7.4	0.67	1.4	0.0	4.22	3.1	2.5
Merged-chr14-57856308-1	chr14	57855808	57856808	+	569.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360097, intron 7 of 13)	intron (NM_001360097, intron 7 of 13)	30069.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	4.0	3.23	4.62	5.4	5.13	0.0	3.17	1.33	3.75
Merged-chr19-28975395-2	chr19	28974897	28975897	+	569.599976	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-11243.0	NM_198651	381218.0	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	2.86	1.84	1.85	7.42	5.6	2.41	2.11	0.88	0.62
Merged-chr1-155096094-1	chr1	155095594	155096594	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_010500)	TTS (NM_010500)	3542.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	33.75	34.1	9.25	20.92	27.52	35.37	16.9	24.76	20.61
Merged-chr9-48432643-1	chr9	48432143	48433143	+	569.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21701.0	NR_026561	667933.0	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	4.0	8.29	5.55	4.05	3.27	3.22	21.12	19.46	16.86
Merged-chr12-116625954-1	chr12	116625454	116626454	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011215, intron 2 of 22)	intron (NM_011215, intron 2 of 22)	140234.0	NM_011215	19276.0	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	5.72	4.61	0.0	0.67	1.87	4.82	3.17	0.88	3.75
Merged-chr19-55850921-1	chr19	55850421	55851421	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-44400.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	15.45	5.07	7.4	6.75	3.27	0.0	10.56	9.29	5.0
Merged-chr6-122304553-1	chr6	122304053	122305053	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-4167.0	NM_010749	17113.0	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	3.43	2.76	3.7	2.02	0.93	4.82	3.17	2.21	2.5
Merged-chr11-117769152-1	chr11	117768652	117769652	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_154387, exon 15 of 19)	non-coding (NR_154387, exon 15 of 19)	10496.0	NR_154387	217353.0	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	5.15	6.45	5.55	6.75	3.73	8.04	21.12	3.54	6.25
Merged-chr1-152537393-1	chr1	152536893	152537893	+	569.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016846, intron 11 of 17)	intron (NM_016846, intron 11 of 17)	87824.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	33.18	32.25	21.27	44.53	37.79	42.6	36.97	29.63	21.86
Merged-chr14-19818100-1	chr14	19817600	19818600	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026528, intron 3 of 7)	intron (NM_026528, intron 3 of 7)	5723.0	NM_026528	68045.0	Mm.21932	NM_026528	ENSMUSG00000021807	Rtraf	2700060E02Rik	RNA transcription, translation and transport factor	protein-coding	6.86	7.83	3.7	4.72	3.73	3.22	3.17	3.54	4.37
Merged-chr3-52300337-1	chr3	52299837	52300837	+	569.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019739, intron 1 of 2)	intron (NM_019739, intron 1 of 2)	32000.0	NM_019739	56458.0	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.86	12.9	5.55	14.84	9.33	9.65	5.28	14.15	13.12
Merged-chr17-34169482-1	chr17	34168982	34169982	+	569.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16291.0	NM_010387	14999.0	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	9.15	3.23	3.7	7.42	2.8	1.61	8.45	7.96	3.75
Merged-chr6-116074045-1	chr6	116073545	116074545	+	569.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-79040.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	57.21	29.49	39.77	76.24	39.19	57.87	42.25	20.34	16.86
Merged-chr1-92082201-1	chr1	92081701	92082701	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	98140.0	NM_207225	208727.0	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	13.16	10.6	6.47	10.12	9.8	7.23	6.34	7.52	5.0
Merged-chr7-83396376-1	chr7	83395876	83396876	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-188555.0	NM_177695	233424.0	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	7.44	7.37	7.4	4.05	4.67	0.0	14.79	7.52	9.37
Merged-chr2-165969672-1	chr2	165969172	165970172	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22965.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	117.27	66.35	54.57	122.8	78.37	102.88	99.28	93.74	47.46
Merged-chr9-114789836-1	chr9	114789336	114790336	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027294, intron 3 of 3)	intron (NM_027294, intron 3 of 3)	-7843.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	11.44	11.52	5.55	12.14	13.53	12.86	28.52	24.76	17.49
Merged-chr7-139119556-1	chr7	139119056	139120056	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021302, intron 8 of 11)	intron (NM_021302, intron 8 of 11)	33555.0	NM_011993	26757.0	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	1.72	2.76	2.77	3.37	0.47	0.0	4.22	0.88	0.0
Merged-chr2-93913774-1	chr2	93913274	93914274	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	43326.0	NM_001145034	620695.0	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	2.86	0.46	7.4	4.72	1.87	1.61	3.17	1.33	2.5
Merged-chr14-19840058-1	chr14	19839558	19840558	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_105025, intron 1 of 2)	intron (NR_105025, intron 1 of 2)	1133.0	NR_105025	52512.0	Mm.483998	NR_105025	ENSMUSG00000114350	D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	3.43	5.53	4.62	5.4	6.06	1.61	7.39	4.86	5.0
Merged-chr17-81581349-1	chr17	81580849	81581849	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	L2|LINE|L2	157038.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	40.62	46.08	26.82	49.93	30.32	45.01	28.52	34.05	34.97
Merged-chr8-34901877-1	chr8	34901377	34902377	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	63813.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	9.15	5.07	3.7	8.1	2.8	11.25	6.34	5.31	3.12
Merged-chr3-105055841-1	chr3	105055341	105056341	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-2695.0	NM_030249	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	9.72	15.21	13.87	14.17	14.0	8.84	11.62	9.29	14.99
Merged-chr8-94954956-1	chr8	94954456	94955456	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22153.0	NM_001198894	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	10.87	13.82	5.55	10.8	6.53	0.0	9.51	7.96	6.25
Merged-chr6-72149799-1	chr6	72149299	72150299	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 6 of 6)	intron (NM_001035228, intron 6 of 6)	-26602.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	5.72	7.83	12.95	10.8	8.86	20.09	5.28	9.29	14.99
Merged-chrX-105121386-1	chrX	105120886	105121886	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_053201, exon 1 of 1)	exon (NM_053201, exon 1 of 1)	1008.0	NM_053201	107528.0	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	0.57	1.38	0.0	1.35	2.8	1.61	3.17	0.44	1.25
Merged-chr12-73534722-1	chr12	73534222	73535222	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11673.0	NM_178715	238257.0	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	5.72	3.23	4.62	1.35	0.47	1.61	2.11	0.88	2.5
Merged-chr13-119434542-1	chr13	119434042	119435042	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 2 of 10)	intron (NM_145457, intron 2 of 10)	5640.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	4.58	5.53	12.95	8.1	8.86	6.43	5.28	6.19	6.25
Merged-chr12-36153427-1	chr12	36152927	36153927	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025840, intron 1 of 11)	intron (NM_025840, intron 1 of 11)	3398.0	NM_025840	66912.0	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	3.43	4.61	0.0	1.35	2.8	1.61	1.06	2.65	3.75
Merged-chr1-121314961-1	chr1	121314461	121315461	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271532, intron 1 of 4)	intron (NM_001271532, intron 1 of 4)	12717.0	NM_001271531	72999.0	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	4.0	5.07	3.7	14.84	6.06	12.86	5.28	4.86	11.24
Merged-chr11-89017900-1	chr11	89017400	89018400	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_009546, exon 9 of 9)	3' UTR (NM_009546, exon 9 of 9)	18497.0	NM_009546	217069.0	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	20.02	18.89	24.05	20.24	19.13	42.6	16.9	8.84	19.98
Merged-chr14-16366502-1	chr14	16366002	16367002	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009409, intron 1 of 35)	intron (NM_009409, intron 1 of 35)	1296.0	NM_009409	21974.0	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	57.21	58.52	38.85	51.28	46.18	47.42	65.48	51.29	34.97
Merged-chr18-55288716-1	chr18	55288216	55289216	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-296125.0	NM_001360787	269023.0	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.86	5.99	9.25	15.52	6.06	8.04	5.28	7.96	4.37
Merged-chr10-89547988-1	chr10	89547488	89548488	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14366.0	NM_001163504	20186.0	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	30.89	17.51	43.47	39.81	34.99	21.7	2.11	5.75	3.75
Merged-chr11-55036758-1	chr11	55036258	55037258	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-3287.0	NM_013472	11749.0	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	19.45	29.03	18.5	1.35	3.27	2.41	0.0	2.21	1.87
Merged-chr15-9138261-1	chr15	9137761	9138761	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013787, intron 2 of 9)	intron (NM_013787, intron 2 of 9)	2193.0	NM_013787	27401.0	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	16.02	14.75	22.2	12.82	11.2	16.88	13.73	9.29	15.61
Merged-chr1-140465763-1	chr1	140465263	140466263	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 13 of 27)	MLT1F|LTR|ERVL-MaLR	190639.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.57	5.53	5.55	4.05	2.33	1.61	4.22	2.65	1.25
Merged-chr15-27676953-1	chr15	27676453	27677453	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198301, intron 1 of 6)	B4A|SINE|B4	4589.0	NM_001242424	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	16.59	21.2	20.35	22.27	14.93	28.94	19.01	11.05	19.36
Merged-chr19-6345370-2	chr19	6344875	6345875	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_117093, intron 14 of 30)	intron (NR_117093, intron 14 of 30)	-1105.0	NR_105955	102465598.0		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	2.86	5.53	5.55	6.07	6.06	15.27	3.17	6.19	8.12
Merged-chr2-27684192-1	chr2	27683692	27684692	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	6991.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	54.35	62.21	83.25	58.03	66.24	102.88	65.48	72.96	64.95
Merged-chr13-55488108-2	chr13	55487619	55488619	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019813)	promoter-TSS (NM_019813)	-43.0	NM_001177372	56320.0	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	4.0	2.76	7.4	3.37	0.93	0.0	4.22	1.33	1.25
Merged-chr7-90032339-1	chr7	90031839	90032839	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110365, intron 1 of 5)	MTE-int|LTR|ERVL-MaLR	3180.0	NR_110364	319711.0	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	114.41	147.45	102.67	102.56	99.83	94.04	141.53	146.36	91.18
Merged-chr19-55365650-1	chr19	55365150	55366150	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360431, intron 3 of 8)	intron (NM_001360431, intron 3 of 8)	49593.0	NM_001293686	53611.0	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	7.44	3.69	1.85	4.72	9.33	4.02	10.56	4.42	3.75
Merged-chr9-96197012-1	chr9	96196512	96197512	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178667, intron 1 of 13)	intron (NM_178667, intron 1 of 13)	737.0	NM_001184708	211586.0	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	14.87	17.51	8.32	20.24	23.33	26.53	17.96	11.94	14.99
Merged-chr5-124424533-1	chr5	124424033	124425033	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081203, intron 1 of 31)	intron (NM_001081203, intron 1 of 31)	1069.0	NM_001359979	243272.0	Mm.23879	NM_145631	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch 1	protein-coding	89.81	64.97	54.57	54.65	49.92	65.91	97.17	95.51	49.34
Merged-chr5-139370446-1	chr5	139369946	139370946	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-701.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	66.93	53.91	69.37	62.75	68.58	82.79	79.21	80.03	62.45
Merged-chr13-113587737-1	chr13	113587237	113588237	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30827.0	NM_130796	170625.0	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	9.72	8.75	5.55	6.75	2.8	1.61	9.51	4.42	3.75
Merged-chr1-40022933-1	chr1	40022433	40023433	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001252202, intron 27 of 29)	intron (NM_001252202, intron 27 of 29)	-61781.0	NM_010555	16178.0	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	12.01	8.29	7.4	2.02	3.27	6.43	4.22	3.1	5.62
Merged-chr6-29649917-1	chr6	29649417	29650417	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40068.0	NM_001347079	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	2.86	3.69	0.0	1.35	2.8	3.22	3.17	0.88	3.12
Merged-chr4-120129572-1	chr4	120129072	120130072	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010657, intron 7 of 8)	L2|LINE|L2	-31634.0	NM_007902	13615.0	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	5.15	2.76	8.32	0.67	0.93	1.61	2.11	2.21	2.5
Merged-chr10-67760690-1	chr10	67760190	67761190	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	151972.0	NM_178679	216049.0	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	9.72	6.91	1.85	6.75	5.6	3.22	7.39	2.65	3.75
Merged-chr10-51484268-1	chr10	51483768	51484768	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008147, intron 6 of 8)	intron (NM_008147, intron 6 of 8)	3656.0	NM_001291892	14727.0	Mm.439661	NM_008147	ENSMUSG00000112023	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	13.16	16.13	7.4	35.76	22.39	39.39	11.62	12.38	11.87
Merged-chr15-13561459-1	chr15	13560959	13561959	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-387784.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	4.0	5.07	1.85	1.35	1.87	4.82	5.28	0.44	7.49
Merged-chr15-77359691-1	chr15	77359191	77360191	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39419.0	NM_029419	75761.0	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.57	4.61	2.77	6.07	2.33	8.04	3.17	3.54	1.25
Merged-chr4-58470452-1	chr4	58469952	58470952	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	28951.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	4.0	2.76	4.62	6.07	2.33	0.8	7.39	4.42	1.25
Merged-chr19-16599480-1	chr19	16598980	16599980	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008137, intron 3 of 6)	intron (NM_008137, intron 3 of 6)	163813.0	NM_008137	14675.0	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	4.0	3.23	5.55	1.35	0.47	4.02	1.06	0.44	1.25
Merged-chr14-76473609-1	chr14	76473109	76474109	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207652, intron 1 of 2)	intron (NM_207652, intron 1 of 2)	-14827.0	NM_001177751	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	2.29	6.45	5.55	2.7	4.2	2.41	25.35	18.13	9.99
Merged-chr19-21572954-1	chr19	21572454	21573454	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	79837.0	NM_025423	66206.0	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	5.72	6.45	0.0	4.05	3.73	0.0	5.28	2.21	5.0
Merged-chrX-13656917-1	chrX	13656417	13657417	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284503, intron 5 of 26)	intron (NM_001284503, intron 5 of 26)	-4446.0	NM_175669	319200.0	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	20.02	17.51	6.47	10.12	11.66	14.47	14.79	14.59	6.87
Merged-chr13-34180004-1	chr13	34179504	34180504	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033167, exon 11 of 11)	3' UTR (NM_001033167, exon 11 of 11)	17040.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	10.3	6.91	10.17	12.82	1.4	6.43	1.06	3.1	6.25
Merged-chr2-163804446-1	chr2	163803946	163804946	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16388.0	NM_016873	22403.0	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	8.01	1.84	1.85	5.4	1.87	0.0	5.28	0.88	2.5
Merged-chr13-4001932-1	chr13	4001432	4002432	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56583.0	NM_031250	83428.0	Mm.313662	NM_031250	ENSMUSG00000044988	Ucn3	ucn III	urocortin 3	protein-coding	7.44	1.84	3.7	2.02	3.73	6.43	3.17	0.44	5.0
Merged-chr11-50161667-1	chr11	50161167	50162167	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290759, exon 16 of 22)	exon (NM_001290759, exon 16 of 22)	-13184.0	NM_026543	68067.0	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	3.43	1.84	8.32	8.77	3.73	1.61	4.22	5.31	0.62
Merged-chr4-147404719-1	chr4	147404219	147405219	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039209, intron 1 of 2)	RLTR11B|LTR|ERVK	-148558.0	NM_001014397	433804.0	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154	zinc finger protein 985	protein-coding	13.73	11.98	15.72	12.82	17.73	11.25	9.51	13.71	16.86
Merged-chr17-35269300-1	chr17	35268800	35269800	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	6177.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	16.59	8.75	12.02	6.07	4.2	8.04	14.79	6.63	7.49
Merged-chr11-34052349-1	chr11	34051849	34052849	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	intron (NM_010696, intron 2 of 20)	5421.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	48.62	64.51	50.87	35.09	30.32	36.17	50.7	53.06	48.09
Merged-chr2-21909720-1	chr2	21909220	21910220	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-317783.0	NM_148413	667663.0	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	2.86	2.3	3.7	4.72	1.4	1.61	5.28	2.21	1.25
Merged-chr12-72364722-1	chr12	72364222	72365222	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	MTD|LTR|ERVL-MaLR	44332.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	3.43	1.38	1.85	2.02	2.33	1.61	9.51	4.42	6.25
Merged-chr4-101641223-1	chr4	101640723	101641723	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001164585, exon 20 of 20)	3' UTR (NM_001164585, exon 20 of 20)	-6560.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	9.72	6.91	3.7	4.05	10.73	6.43	7.39	0.44	9.99
Merged-chr7-101905073-1	chr7	101904573	101905573	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025605)	promoter-TSS (NM_025605)	-764.0	NM_025605	66508.0	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	240.26	247.9	180.37	255.04	289.7	197.73	274.61	290.95	152.38
Merged-chr1-97673623-1	chr1	97673123	97674123	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-11605.0	NM_133825	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	10.3	23.96	12.02	18.89	15.39	12.86	10.56	9.73	2.5
Merged-chr1-97650261-1	chr1	97649761	97650761	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355071, intron 1 of 1)	intron (NM_001355071, intron 1 of 1)	11415.0	NM_001355074	52392.0	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	16.02	11.52	12.02	11.47	4.67	15.27	11.62	6.19	14.36
Merged-chr2-84840589-1	chr2	84840089	84841089	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001083809)	promoter-TSS (NM_001083809)	-37.0	NM_001083809	72401.0	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	1.14	3.23	1.85	1.35	0.93	2.41	1.06	3.1	3.12
Merged-chr12-42159685-1	chr12	42159185	42160185	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-673628.0	NM_010733	16981.0	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	2.86	3.23	1.85	4.05	13.06	4.82	6.34	3.98	1.25
Merged-chr10-80386680-1	chr10	80386180	80387180	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_198615, exon 1 of 2)	exon (NM_198615, exon 1 of 2)	971.0	NM_198615	237400.0	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	14.87	7.37	3.7	15.52	3.73	8.04	13.73	3.54	5.0
Merged-chr6-91281305-1	chr6	91280805	91281805	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68541.0	NM_007992	14115.0	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	1.14	1.38	1.85	1.35	0.47	6.43	1.06	1.33	3.12
Merged-chr7-142737132-1	chr7	142736632	142737632	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57406.0	NM_001185084	16334.0	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	5.72	1.38	0.0	2.02	0.47	1.61	2.11	1.33	1.25
Merged-chr7-46547789-1	chr7	46547289	46548289	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013789, intron 9 of 10)	Tigger14a|DNA|TcMar-Tigger	92018.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	16.02	16.59	15.72	15.52	6.06	16.08	12.67	5.75	14.99
Merged-chr3-19522394-1	chr3	19521894	19522894	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	-8853.0	NM_001163537	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	3.43	0.92	0.0	2.7	3.27	0.0	1.06	0.88	1.25
Merged-chr17-27800916-1	chr17	27800416	27801416	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033279, intron 1 of 4)	intron (NM_001033279, intron 1 of 4)	19626.0	NM_001033279	224647.0	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	5.72	4.61	4.62	6.75	6.53	8.04	8.45	3.98	11.24
Merged-chr10-50699132-1	chr10	50698632	50699632	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198007, intron 14 of 41)	intron (NM_198007, intron 14 of 41)	106463.0	NM_198007	77987.0	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	4.58	5.07	2.77	2.7	3.27	0.8	4.22	1.33	6.25
Merged-chr5-64625048-1	chr5	64624548	64625548	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14349.0	NR_045078	100042198.0	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	8.01	9.68	11.1	6.75	2.8	10.45	44.36	33.6	16.24
Merged-chr9-7349708-1	chr9	7349208	7350208	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001320077, intron 3 of 10)	intron (NM_001320077, intron 3 of 10)	2334.0	NM_008605	17381.0	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	8.58	1.84	9.25	5.4	5.13	8.04	6.34	7.52	2.5
Merged-chr2-145469532-1	chr2	145469032	145470032	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	85450.0	NM_001037929	627302.0	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	22.88	32.25	24.05	26.99	12.13	15.27	51.75	50.41	36.85
Merged-chr7-16402116-1	chr7	16401616	16402616	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198631, intron 1 of 13)	intron (NM_198631, intron 1 of 13)	920.0	NM_198631	330474.0	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	37.18	68.2	71.22	53.3	55.51	62.7	71.82	91.53	58.71
Merged-chr9-106193169-1	chr9	106192669	106193669	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	5770.0	NM_198931	67905.0	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	4.0	9.22	8.32	2.02	4.67	11.25	6.34	1.77	14.36
Merged-chr11-85505953-1	chr11	85505453	85506453	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	152789.0	NM_001166643	192197.0	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	11.44	12.44	3.7	11.47	13.06	32.96	11.62	10.17	7.49
Merged-chr2-148395861-1	chr2	148395361	148396361	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009219, exon 1 of 1)	exon (NM_009219, exon 1 of 1)	484.0	NM_009219	20608.0	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	5.72	1.84	0.0	2.7	0.47	1.61	0.0	1.33	0.0
Merged-chr3-83843441-1	chr3	83842941	83843941	+	569.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1833.0	NM_011905	24088.0	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	97.25	93.54	52.72	109.3	82.57	105.3	102.45	103.47	61.83
Merged-chr2-156316536-1	chr2	156316036	156317036	+	569.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027585, intron 1 of 12)	intron (NM_027585, intron 1 of 12)	-3832.0	NM_020255	19018.0	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	13.16	12.9	28.67	2.7	3.73	12.86	11.62	16.8	24.98
Merged-chr4-86885120-1	chr4	86884620	86885620	+	569.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290543, intron 1 of 5)	B3|SINE|B2	10706.0	NM_139306	230379.0	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	6.29	0.92	0.0	2.02	1.87	1.61	4.22	4.86	6.87
Merged-chr9-124054600-1	chr9	124054100	124055100	+	568.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32629.0	NM_009914	12771.0	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	31.46	65.89	39.77	38.46	48.52	66.71	47.53	52.62	51.21
Merged-chr7-98963075-3	chr7	98962563	98963563	+	568.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 12 of 14)	ORR1B1|LTR|ERVL-MaLR	124218.0	NM_001285795	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	5.15	2.76	7.4	6.07	3.27	10.45	1.06	4.86	3.75
Merged-chr7-99433065-1	chr7	99432565	99433565	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362168, intron 4 of 17)	intron (NM_001362168, intron 4 of 17)	-32939.0	NM_028145	72184.0	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	8.58	3.23	7.4	11.47	5.13	7.23	6.34	6.19	5.62
Merged-chr16-90072912-1	chr16	90072412	90073412	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-69325.0	NR_033476	100038709.0	Mm.484070	NR_033476		Gm10789	-	predicted gene 10789	ncRNA	3.43	5.99	0.0	8.1	5.13	3.22	1.06	2.65	6.25
Merged-chr1-144256723-1	chr1	144256223	144257223	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7619.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	14.3	8.29	11.1	5.4	6.06	11.25	5.28	7.52	5.0
Merged-chr7-90139818-1	chr7	90139318	90140318	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	L1MB7|LINE|L1	9605.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	42.33	48.84	30.52	47.9	51.32	48.23	29.57	40.24	38.72
Merged-chr19-7496349-2	chr19	7495852	7496852	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146091, intron 1 of 12)	B2_Mm1a|SINE|B2	1914.0	NM_146091	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	23.45	22.12	22.2	26.99	14.93	12.06	30.63	9.29	24.98
Merged-chr10-61694993-1	chr10	61694493	61695493	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001272090)	promoter-TSS (NM_001272090)	-521.0	NM_001272090	71767.0	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	60.64	76.95	59.2	80.29	61.58	49.03	74.99	84.01	43.09
Merged-chr1-56971224-1	chr1	56970724	56971724	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_024325)	promoter-TSS (NR_024325)	110.0	NM_139146	212712.0	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.57	0.46	1.85	3.37	2.8	0.0	9.51	0.44	5.0
Merged-chr5-148674467-1	chr5	148673967	148674967	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-67373.0	NR_028285	70138.0	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.43	1.84	0.0	0.67	3.73	4.82	13.73	12.38	16.24
Merged-chr1-7077368-2	chr1	7076876	7077876	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11544.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	4.58	10.14	3.7	8.77	10.26	4.82	10.56	16.8	5.0
Merged-chr17-29030785-2	chr17	29030253	29031253	+	568.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1907.0	NM_013663	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	6.86	5.99	7.4	6.07	7.0	8.04	4.22	7.52	2.5
Merged-chr1-36589190-1	chr1	36588690	36589690	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	4142.0	NM_027957	381337.0	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	8.01	7.37	17.57	15.52	11.66	6.43	19.01	14.59	10.62
Merged-chr18-15665249-1	chr18	15664749	15665749	+	568.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	52797.0	NM_199055	71367.0	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	6.29	2.76	1.85	5.4	6.06	4.82	6.34	0.44	3.75
Merged-chr19-45079386-2	chr19	45078886	45079886	+	568.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001362398)	TTS (NM_001362398)	3299.0	NM_001362397	107250.0	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	2.29	3.69	7.4	7.42	2.33	4.82	0.0	3.98	4.37
Merged-chr1-154823237-1	chr1	154822737	154823737	+	568.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97317.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	4.58	7.83	12.95	4.72	3.73	8.04	5.28	1.33	5.0
Merged-chr17-84185053-1	chr17	84184553	84185553	+	568.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2894.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	33.18	53.45	27.75	30.36	54.58	25.72	48.58	84.9	38.72
Merged-chr5-23617859-1	chr5	23617359	23618359	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	MIRb|SINE|MIR	-1288.0	NM_009274	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	9.15	18.89	7.4	15.52	24.26	17.68	14.79	11.05	10.62
Merged-chr10-93464412-1	chr10	93463912	93464912	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008517, intron 3 of 18)	intron (NM_008517, intron 3 of 18)	11016.0	NM_008517	16993.0	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	4.58	3.69	11.1	5.4	6.53	3.22	3.17	1.33	1.87
Merged-chr12-40569737-1	chr12	40569237	40570237	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	123684.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	52.06	37.32	43.47	57.35	69.04	49.83	25.35	16.8	24.98
Merged-chr15-102399177-1	chr15	102398677	102399677	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7139.0	NM_013672	20683.0	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	118.99	121.19	89.72	98.51	75.57	74.75	73.93	78.71	84.31
Merged-chr17-56022415-1	chr17	56021915	56022915	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013664, intron 1 of 9)	intron (NM_013664, intron 1 of 9)	13214.0	NM_026530	68047.0	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	14.3	5.99	20.35	19.57	7.46	28.94	13.73	3.1	6.87
Merged-chr2-14237545-1	chr2	14237045	14238045	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 1 of 29)	intron (NM_008625, intron 1 of 29)	8131.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	26.31	29.49	49.02	37.11	17.26	28.94	45.42	43.33	41.84
Merged-chr2-155336426-1	chr2	155335926	155336926	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004721, intron 3 of 11)	intron (NM_001004721, intron 3 of 11)	-20391.0	NR_030475	735287.0		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	5.72	1.38	6.47	5.4	4.2	1.61	2.11	7.52	3.75
Merged-chr8-30840286-1	chr8	30839786	30840786	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-249241.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	2.29	0.46	9.25	5.4	2.33	2.41	0.0	1.33	1.25
Merged-chr13-17696325-1	chr13	17695825	17696825	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025479, intron 1 of 1)	intron (NM_025479, intron 1 of 1)	912.0	NM_025479	66308.0	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	98.97	125.79	96.2	91.09	82.57	90.02	143.64	149.89	89.93
Merged-chr3-90612868-1	chr3	90612368	90613368	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011313)	promoter-TSS (NM_011313)	-26.0	NM_011313	20200.0	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	3.43	2.3	3.7	2.7	3.73	0.0	4.22	1.77	3.75
Merged-chr14-56304373-2	chr14	56303880	56304880	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42046.0	NM_013542	14939.0	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	2.86	1.84	0.0	1.35	0.0	6.43	1.06	1.33	7.49
Merged-chrX-169269304-1	chrX	169268804	169269804	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_109847, intron 9 of 14)	intron (NR_109847, intron 9 of 14)	51068.0	NM_001331050	15159.0	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	11.44	11.06	2.77	8.77	11.2	4.82	9.51	9.29	3.75
Merged-chr3-94476823-1	chr3	94476323	94477323	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1472.0	NM_001289616	78784.0	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|ETR-1|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	4.0	3.23	4.62	6.75	4.2	4.82	4.22	3.98	6.25
Merged-chr2-6791737-1	chr2	6791237	6792237	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110232, intron 3 of 15)	intron (NM_001110232, intron 3 of 15)	-70075.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	1.14	3.23	3.7	4.72	6.53	0.0	5.28	4.86	3.75
Merged-chr6-120493937-1	chr6	120493437	120494437	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_033567)	promoter-TSS (NM_033567)	-130.0	NM_033567	94047.0	Mm.23088	NM_033567	ENSMUSG00000094626	Tmem121b	AW048664|Cecr6	transmembrane protein 121B	protein-coding	4.0	3.23	11.1	4.05	1.4	0.0	5.28	0.0	1.25
Merged-chr6-52957866-1	chr6	52957366	52958366	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	LTR41B|LTR|ERVL	-48246.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.29	0.46	0.0	6.75	2.8	3.22	0.0	2.65	3.75
Merged-chr7-98149173-1	chr7	98148673	98149673	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007602, intron 3 of 12)	intron (NM_007602, intron 3 of 12)	-3726.0	NM_011010	18378.0	Mm.440368	NM_011010	ENSMUSG00000074006	Omp	-	olfactory marker protein	protein-coding	1.72	5.53	3.7	4.72	1.87	3.22	2.11	0.0	3.75
Merged-chr11-95232210-1	chr11	95231710	95232710	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-29319.0	NM_053093	93670.0	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	1.72	1.38	5.55	0.67	0.0	0.0	3.17	2.21	6.25
Merged-chr1-85698344-1	chr1	85697844	85698844	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013673, intron 14 of 19)	intron (NM_013673, intron 14 of 19)	38262.0	NM_177055	319997.0	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	16.02	10.6	24.97	16.19	8.86	17.68	16.9	13.27	6.87
Merged-chr12-79751770-1	chr12	79751270	79752270	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	172963.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	46.34	51.15	37.92	31.71	26.59	21.7	13.73	19.46	13.74
Merged-chr4-6344562-1	chr4	6344062	6345062	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Tigger9a|DNA|TcMar-Tigger	-21118.0	NM_016807	53378.0	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	2.86	0.46	3.7	2.7	1.4	3.22	3.17	4.86	4.37
Merged-chr3-28809558-1	chr3	28809058	28810058	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4050.0	NM_026517	68028.0	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	6.86	3.23	6.47	10.12	1.4	1.61	3.17	0.44	9.99
Merged-chr4-88471723-1	chr4	88471223	88472223	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32797.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.57	7.83	3.7	8.1	10.26	1.61	8.45	4.42	1.25
Merged-chr7-96510619-1	chr7	96510119	96511119	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-168655.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	3.43	2.76	0.0	2.7	4.2	1.61	0.0	3.54	1.25
Merged-chr4-134128345-2	chr4	134127850	134128850	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080559, intron 1 of 2)	intron (NM_080559, intron 1 of 2)	403.0	NM_080559	73723.0	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	43.48	46.08	48.1	41.16	31.72	49.83	71.82	55.71	41.84
Merged-chr4-59295405-1	chr4	59294905	59295905	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35354.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	9.15	5.99	3.7	16.87	8.86	9.65	6.34	6.63	1.25
Merged-chr9-52287581-1	chr9	52287081	52288081	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119470.0	NM_001162921	244871.0	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	10.87	8.29	8.32	5.4	7.46	5.63	8.45	3.98	1.87
Merged-chr2-35450413-1	chr2	35449913	35450913	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	11036.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	36.61	34.56	60.12	37.11	31.26	20.09	16.9	16.8	18.11
Merged-chr6-50377074-1	chr6	50376574	50377574	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	5763.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	92.67	151.14	98.05	31.04	25.66	29.74	101.39	100.37	81.19
Merged-chrX-13344991-1	chrX	13344491	13345491	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63969.0	NM_010028	13205.0	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	4.58	4.61	3.7	7.42	1.87	11.25	0.0	2.21	0.62
Merged-chr2-57335617-1	chr2	57335117	57336117	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010274, intron 6 of 16)	intron (NM_010274, intron 6 of 16)	97235.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	8.01	2.76	3.7	2.7	3.27	1.61	5.28	5.75	3.12
Merged-chr9-120582322-1	chr9	120581822	120582822	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4991.0	NR_073359	76100.0	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	35.47	27.19	25.9	44.53	44.32	53.85	43.3	39.35	22.48
Merged-chr10-62504891-1	chr10	62504391	62505391	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358965, intron 2 of 3)	MLT1B|LTR|ERVL-MaLR	2866.0	NM_011157	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	71.51	71.42	52.72	78.94	58.78	56.27	65.48	66.77	67.45
Merged-chr9-63603475-1	chr9	63602975	63603975	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	829.0	NR_151671	66939.0	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	95.53	120.26	81.4	136.29	118.03	106.9	197.51	219.31	68.7
Merged-chr5-39852825-1	chr5	39852325	39853325	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-208194.0	NM_010474	15476.0	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	6.29	3.23	18.5	5.4	6.06	8.04	20.07	6.19	6.25
Merged-chr7-63897683-1	chr7	63897183	63898183	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-19174.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	29.75	51.15	36.07	43.86	59.25	58.68	61.26	51.29	53.71
Merged-chr12-102389919-1	chr12	102389419	102390419	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001161365, exon 10 of 10)	exon (NM_001161365, exon 10 of 10)	49894.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	6.86	5.07	11.1	12.82	1.87	9.65	5.28	3.54	11.87
Merged-chr5-65198975-1	chr5	65198475	65199475	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_153391)	promoter-TSS (NM_153391)	-721.0	NM_001359880	213081.0	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	66.36	102.29	25.9	112.68	111.96	91.63	96.11	92.41	50.59
Merged-chr19-20797860-1	chr19	20797360	20798360	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028953, intron 17 of 20)	intron (NM_028953, intron 17 of 20)	-70304.0	NM_011921	26358.0	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	4.58	1.38	2.77	2.02	1.87	4.82	4.22	3.1	3.12
Merged-chr2-18983571-2	chr2	18983078	18984078	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	MTD|LTR|ERVL-MaLR	14543.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	9.15	17.51	21.27	8.77	10.73	6.43	14.79	6.63	13.74
Merged-chr11-8717018-1	chr11	8716518	8717518	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52483.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.86	3.23	1.85	6.07	4.2	3.22	2.11	5.31	10.62
Merged-chr1-46905073-1	chr1	46904573	46905573	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356417, intron 1 of 10)	ORR1E|LTR|ERVL-MaLR	20703.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	12.59	9.22	11.1	17.54	8.4	11.25	2.11	3.54	4.37
Merged-chr4-150188425-1	chr4	150187925	150188925	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009802, intron 7 of 7)	B4A|SINE|B4	12710.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	2.29	1.84	7.4	4.05	1.4	3.22	3.17	1.33	3.75
Merged-chr10-75221649-1	chr10	75221149	75222149	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145826, intron 1 of 18)	intron (NM_001145826, intron 1 of 18)	9259.0	NM_001145826	74392.0	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	175.62	178.78	130.42	134.27	104.96	98.06	155.26	179.08	108.67
Merged-chr2-46521024-1	chr2	46520524	46521524	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	824419.0	NR_040497	69405.0	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.15	2.76	5.55	4.72	7.0	9.65	7.39	0.44	8.74
Merged-chr19-38223553-1	chr19	38223053	38224053	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081075, intron 1 of 13)	intron (NM_001081075, intron 1 of 13)	579.0	NM_001081075	70567.0	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	14.87	13.82	15.72	14.17	18.66	14.47	36.97	31.84	9.37
Merged-chr1-186932144-2	chr1	186931649	186932649	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR51B_Mm|LTR|ERVK?	-35267.0	NM_033077	110957.0	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	15.45	20.27	3.7	0.67	0.93	1.61	16.9	13.27	10.62
Merged-chrX-159810511-1	chrX	159810011	159811011	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021389, intron 3 of 16)	intron (NM_021389, intron 3 of 16)	-29957.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	4.58	3.23	0.0	4.05	0.0	1.61	2.11	7.07	2.5
Merged-chr2-165233598-1	chr2	165233098	165234098	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174988, intron 1 of 11)	CpG	1139.0	NM_174988	104010.0	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	3.43	2.3	1.85	2.7	1.4	3.22	6.34	0.0	2.5
Merged-chr11-73137363-1	chr11	73136863	73137863	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010353, exon 1 of 1)	exon (NM_010353, exon 1 of 1)	931.0	NM_010353	14841.0	Mm.42045	NM_010353	ENSMUSG00000050107	Haspin	Gsg2	histone H3 associated protein kinase	protein-coding	65.21	65.89	59.2	51.95	52.72	67.52	76.05	74.28	47.46
Merged-chr13-12256508-1	chr13	12256008	12257008	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 1 of 32)	intron (NM_001081128, intron 1 of 32)	1605.0	NM_001081128	238505.0	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	164.18	174.18	79.55	122.12	145.55	69.13	177.44	217.1	71.82
Merged-chr16-44136069-1	chr16	44135569	44136569	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	3190.0	NM_001358203	11964.0	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	27.46	22.12	11.1	35.09	25.66	40.99	40.14	25.65	24.36
Merged-chr5-137481340-1	chr5	137480840	137481840	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4276.0	NM_011741	22635.0	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	2.29	0.92	1.85	2.02	0.0	0.0	1.06	0.0	0.0
Merged-chr14-46965170-1	chr14	46964670	46965670	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-10242.0	NR_105813	102465206.0		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	6.29	4.15	5.55	8.77	0.47	4.82	16.9	0.88	2.5
Merged-chr11-20263193-1	chr11	20262693	20263693	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13769.0	NM_172260	216543.0	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	1.72	2.76	1.85	0.67	1.87	3.22	4.22	5.75	5.0
Merged-chr1-131678769-1	chr1	131678269	131679269	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9926.0	NM_001311096	226421.0	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	15.45	6.45	6.47	10.8	7.46	3.22	21.12	16.8	6.25
Merged-chr9-47719185-1	chr9	47718685	47719685	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	99023.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	14.87	21.66	33.3	28.34	21.46	36.17	19.01	23.88	17.49
Merged-chr2-102201679-1	chr2	102201179	102202179	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15219.0	NM_001290784	241576.0	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.0	0.0	0.0	3.37	0.93	3.22	1.06	0.44	1.25
Merged-chr15-22129793-1	chr15	22129293	22130293	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B2|LTR|ERVK	585191.0	NM_001165971	545091.0	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	6.86	2.3	5.55	4.72	0.93	3.22	4.22	3.98	3.75
Merged-chr16-38406879-2	chr16	38406370	38407370	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134102, intron 7 of 10)	intron (NM_134102, intron 7 of 10)	26275.0	NM_134102	85031.0	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.57	0.0	9.25	6.75	2.8	1.61	2.11	0.88	9.37
Merged-chr12-103356020-1	chr12	103355520	103356520	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023049)	promoter-TSS (NM_023049)	-19.0	NM_023049	65256.0	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	5.15	5.53	12.95	4.05	3.27	5.63	3.17	4.42	1.25
Merged-chr12-105971352-1	chr12	105970852	105971852	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38911.0	NM_011705	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	2.86	3.23	2.77	5.4	1.87	1.61	3.17	0.0	0.0
Merged-chr17-34858312-1	chr17	34857812	34858812	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_105938)	promoter-TSS (NR_105938)	-680.0	NR_105938	102465587.0		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	21.17	24.42	49.02	17.54	13.06	16.08	38.02	24.76	14.99
Merged-chr11-24142334-1	chr11	24141834	24142834	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016707, intron 2 of 4)	intron (NM_016707, intron 2 of 4)	61639.0	NM_001159290	14025.0	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	9.72	4.61	12.02	6.07	2.33	1.61	9.51	5.75	6.25
Merged-chr11-98954246-1	chr11	98953746	98954746	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009024, intron 2 of 8)	intron (NM_009024, intron 2 of 8)	-6225.0	NM_001176528	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	74.94	41.01	40.7	52.63	21.93	49.83	84.49	39.35	56.83
Merged-chrX-109163974-1	chrX	109163474	109164474	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32782.0	NM_001037917	622976.0	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	2.29	3.23	3.7	6.75	1.87	6.43	2.11	7.52	1.87
Merged-chr18-9618995-1	chr18	9618495	9619495	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007593, exon 1 of 1)	exon (NM_007593, exon 1 of 1)	474.0	NM_007593	26369.0	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	2.86	3.69	3.7	2.7	5.13	4.82	6.34	7.96	5.0
Merged-chr18-82848145-1	chr18	82847645	82848645	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7752.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	9.15	3.69	2.77	12.14	1.87	8.04	10.56	1.77	9.37
Merged-chr1-161748359-1	chr1	161747859	161748859	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	40136.0	NM_001205243	14103.0	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	4.0	0.46	0.0	5.4	1.87	1.61	4.22	2.21	6.87
Merged-chr17-87636641-2	chr17	87636152	87637152	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_008532, exon 2 of 10)	5' UTR (NM_008532, exon 2 of 10)	673.0	NM_008532	17075.0	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	2.29	3.23	5.55	6.07	0.93	4.02	2.11	3.1	0.0
Merged-chr1-170478385-1	chr1	170477885	170478885	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109985, intron 2 of 9)	intron (NM_001109985, intron 2 of 9)	78725.0	NM_027528	70729.0	Mm.409310	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	1.14	0.46	8.32	4.05	1.87	3.22	1.06	0.0	3.75
Merged-chr2-66186323-1	chr2	66185823	66186823	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001047604, intron 27 of 28)	intron (NM_001047604, intron 27 of 28)	-61530.0	NM_015736	14425.0	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	12.59	6.91	11.1	8.77	8.86	12.86	10.56	5.75	3.12
Merged-chr13-75810107-1	chr13	75809607	75810607	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR35B_MM|LTR|ERVL	-29778.0	NM_001360151	93692.0	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	1.72	3.23	0.0	0.67	0.93	0.0	0.0	3.98	2.5
Merged-chr6-97294609-1	chr6	97294109	97295109	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145148, intron 22 of 23)	intron (NM_145148, intron 22 of 23)	-41829.0	NM_001081157	320502.0	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	48.62	41.47	37.0	49.25	34.99	17.68	31.69	50.85	20.61
Merged-chr2-76065342-1	chr2	76064842	76065842	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-83375.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	3.43	6.45	5.55	4.72	4.67	4.02	6.34	4.86	8.74
Merged-chr6-70787738-1	chr6	70787238	70788238	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009075, intron 1 of 8)	intron (NM_009075, intron 1 of 8)	4437.0	NM_009075	19895.0	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.15	5.53	11.1	7.42	0.93	1.61	4.22	3.54	1.25
Merged-chr8-119811585-1	chr8	119811085	119812085	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	ID2|SINE|ID	28994.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	24.6	11.52	21.27	12.14	10.73	26.53	13.73	17.24	14.36
Merged-chr18-38911953-1	chr18	38911453	38912453	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033789, intron 3 of 4)	intron (NM_001033789, intron 3 of 4)	6746.0	NM_010197	14164.0	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	2.86	2.3	0.0	6.07	5.6	11.25	6.34	5.75	3.75
Merged-chr11-63811276-1	chr11	63810776	63811776	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	111008.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.72	4.15	1.85	3.37	2.8	1.61	0.0	0.44	2.5
Merged-chr6-136807577-1	chr6	136807077	136808077	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177688)	promoter-TSS (NM_177688)	-671.0	NM_177688	232440.0	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	11.44	5.53	16.65	14.84	4.67	14.47	48.58	47.31	40.59
Merged-chr4-88503880-1	chr4	88503380	88504380	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18914.0	NM_010510	15977.0	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	4.58	6.45	5.55	4.72	4.67	3.22	7.39	4.86	3.12
Merged-chr15-97718031-1	chr15	97717531	97718531	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008902, intron 5 of 8)	intron (NM_008902, intron 5 of 8)	3119.0	NM_008902	19011.0	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	4.58	6.45	7.4	1.35	2.8	4.82	1.06	0.88	1.25
Merged-chr15-6578512-1	chr15	6578012	6579012	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1335.0	NM_001278269	23880.0	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Fyb1|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	152.17	105.98	135.04	129.55	66.24	133.43	140.47	129.11	103.67
Merged-chr16-33408521-1	chr16	33408021	33409021	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001358569, intron 1 of 8)	MTD|LTR|ERVL-MaLR	8076.0	NM_001358569	22661.0	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	21.17	23.04	32.37	23.62	16.33	19.29	34.85	38.03	26.23
Merged-chr19-14630930-1	chr19	14630430	14631430	+	568.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR10D|LTR|ERVK	-32747.0	NM_001302947	21888.0	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	2.86	5.07	5.55	2.7	5.13	0.0	7.39	5.31	1.25
Merged-chr4-129385854-1	chr4	129385354	129386354	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151530, intron 1 of 2)	MTD|LTR|ERVL-MaLR	3135.0	NR_151530	320896.0	Mm.404042	NR_151530		C330020E22Rik	-	RIKEN cDNA C330020E22 gene	ncRNA	72.65	65.89	65.67	50.6	61.11	73.95	83.44	80.92	66.2
Merged-chr13-5601801-1	chr13	5601301	5602301	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	256291.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.58	4.15	1.85	6.75	3.73	1.61	3.17	2.21	2.5
Merged-chr7-19712613-1	chr7	19712113	19713113	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109748, intron 3 of 8)	B2_Mm1t|SINE|B2	2816.0	NM_001109748	53333.0	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40	protein-coding	1.14	3.69	6.47	4.05	1.87	2.41	3.17	3.54	7.49
Merged-chr4-126683222-1	chr4	126682722	126683722	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011970, intron 1 of 5)	RMER6A|LTR|ERVK	5579.0	NM_011970	26445.0	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	37.76	49.76	51.8	31.04	31.26	35.37	39.08	56.16	33.72
Merged-chr5-142702135-1	chr5	142701635	142702635	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_146257)	promoter-TSS (NM_146257)	34.0	NM_146257	243328.0	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	1.72	1.84	0.0	2.7	0.0	8.04	2.11	1.33	0.0
Merged-chr7-29769344-1	chr7	29768844	29769844	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_023750, intron 1 of 4)	intron (NM_023750, intron 1 of 4)	792.0	NM_023750	74352.0	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	97.82	115.66	54.57	65.45	59.25	47.42	54.92	49.96	31.85
Merged-chr2-122753937-1	chr2	122753437	122754437	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11422.0	NM_001162503	59010.0	Mm.28986	NM_021507	ENSMUSG00000005803	Sqor	0610039J17Rik|4930557M22Rik|Sqrdl	sulfide quinone oxidoreductase	protein-coding	0.57	4.15	0.0	3.37	3.73	0.0	3.17	1.33	2.5
Merged-chr16-94525674-1	chr16	94525174	94526174	+	568.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007834, intron 1 of 7)	L1MC4a|LINE|L1	955.0	NM_007834	13185.0	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	DSCR3 arrestin fold containing	protein-coding	177.34	267.72	211.81	194.32	254.25	213.81	230.25	306.86	138.02
Merged-chr7-58711948-1	chr7	58711448	58712448	+	568.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009728, intron 1 of 20)	intron (NM_009728, intron 1 of 20)	53746.0	NM_009728	11982.0	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	3.43	1.38	1.85	4.72	5.6	1.61	4.22	0.44	7.49
Merged-chr4-33251099-3	chr4	33250603	33251603	+	567.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mur3|SINE|Alu	-2316.0	NM_001033225	108767.0	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	31.46	41.01	60.12	14.84	19.59	29.74	24.29	28.74	16.24
Merged-chr18-38484142-1	chr18	38483642	38484642	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	65235.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	6.86	2.3	1.85	12.82	2.8	1.61	5.28	1.77	2.5
Merged-chr8-23040069-1	chr8	23039569	23040569	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001277284, intron 1 of 42)	intron (NM_001277284, intron 1 of 42)	4970.0	NM_001277284	11733.0	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	2.29	1.38	5.55	0.67	4.67	4.82	3.17	2.21	9.37
Merged-chr12-80198877-1	chr12	80198377	80199377	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134156, intron 4 of 20)	intron (NM_134156, intron 4 of 20)	61494.0	NM_134156	109711.0	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	9.15	4.15	9.25	8.1	2.33	1.61	6.34	5.31	5.0
Merged-chr3-146047971-1	chr3	146047471	146048471	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172864, intron 19 of 22)	intron (NM_172864, intron 19 of 22)	60065.0	NM_172864	242253.0	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik|IC140|Ida7	WD repeat domain 63	protein-coding	4.0	4.15	0.0	1.35	2.33	0.8	4.22	3.54	3.75
Merged-chr11-3130419-2	chr11	3129927	3130927	+	567.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_003517, exon 7 of 7)	non-coding (NR_003517, exon 7 of 7)	6406.0	NR_003517	236604.0	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	19.45	11.06	29.6	21.59	17.73	39.39	3.17	3.1	35.6
Merged-chr5-92509773-1	chr5	92509273	92510273	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4116.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	64.07	70.04	49.02	69.5	46.65	70.73	91.89	93.3	46.84
Merged-chr1-24676871-1	chr1	24676371	24677371	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1673.0	NM_026719	68421.0	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.58	10.6	0.0	4.72	4.67	1.61	12.67	3.1	3.12
Merged-chr17-24752928-1	chr17	24752428	24753428	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001357340)	promoter-TSS (NM_001357340)	-60.0	NM_001357342	328779.0	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	5.72	2.3	1.85	1.35	0.47	0.0	3.17	0.88	0.0
Merged-chr2-122312807-2	chr2	122312323	122313323	+	567.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305262, intron 3 of 9)	intron (NM_001305262, intron 3 of 9)	907.0	NM_001305262	213696.0	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	2.86	0.0	0.92	3.37	1.4	0.8	1.06	2.21	1.25
Merged-chr7-130859007-2	chr7	130858524	130859524	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6700.0	NM_133942	101476.0	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	84.66	80.64	54.57	83.66	66.24	53.05	79.21	76.05	51.21
Merged-chr2-166651852-1	chr2	166651352	166652352	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	61980.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	22.31	20.27	26.82	19.57	21.93	45.82	14.79	22.55	18.74
Merged-chr6-29609204-2	chr6	29608717	29609717	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361290, intron 1 of 23)	CpG	632.0	NM_177296	320938.0	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	62.93	88.93	83.25	78.94	103.1	106.1	83.44	87.99	57.46
Merged-chr7-109493634-1	chr7	109493134	109494134	+	567.5	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001170913, exon 1 of 20)	5' UTR (NM_001170913, exon 1 of 20)	104.0	NM_001170913	330627.0	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	5.15	3.23	7.4	3.37	4.2	1.61	0.0	2.65	1.25
Merged-chr3-52729160-1	chr3	52728660	52729660	+	567.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10564.0	NR_038079	329639.0	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.86	0.46	0.0	0.0	3.27	1.61	3.17	2.65	5.0
Merged-chr4-142084688-1	chr4	142084188	142085188	+	567.400024	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145402)	promoter-TSS (NM_145402)	-384.0	NM_145402	214359.0	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	114.98	104.14	124.87	101.21	106.83	109.32	158.43	145.03	57.46
Merged-chr3-57667184-2	chr3	57666695	57667695	+	567.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001033349)	TTS (NM_001033349)	-15511.0	NM_175095	52245.0	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	8.58	1.84	5.55	2.02	1.87	3.22	2.11	3.1	4.37
Merged-chr11-83639273-1	chr11	83638773	83639773	+	567.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	10105.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	9.15	24.42	10.17	39.81	41.99	29.74	26.4	19.46	18.74
Merged-chr8-22139851-1	chr8	22139351	22140351	+	567.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011848, intron 11 of 15)	intron (NM_011848, intron 11 of 15)	-14784.0	NM_001347318	330721.0	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	49.77	68.66	48.1	66.8	86.77	60.28	1.06	1.77	1.25
Merged-chr6-115662387-2	chr6	115661892	115662892	+	567.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029780, intron 1 of 16)	B1_Mur1|SINE|Alu	13496.0	NM_001356334	110157.0	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	45.76	46.54	55.5	45.21	44.32	36.97	46.47	68.54	35.6
Merged-chr11-117390465-2	chr11	117389953	117390953	+	567.166626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-23936.0	NR_132097	105827746.0	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	-	predicted gene 11729	ncRNA	10.3	4.15	1.85	5.4	5.6	1.61	5.28	3.1	0.62
Merged-chr11-117308936-1	chr11	117308436	117309436	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001113486, intron 3 of 11)	intron (NM_001113486, intron 3 of 11)	-22779.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	36.61	31.33	28.67	33.74	15.86	32.15	21.12	8.84	12.49
Merged-chr15-77782573-1	chr15	77782073	77783073	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022410, intron 15 of 40)	intron (NM_022410, intron 15 of 40)	-25563.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	1.72	1.84	7.4	6.07	0.93	1.61	3.17	1.33	2.5
Merged-chr2-52945455-1	chr2	52944955	52945955	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	87587.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	22.88	15.21	8.32	27.66	16.33	22.51	19.01	15.92	14.36
Merged-chr5-108660312-1	chr5	108659812	108660812	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172997)	promoter-TSS (NM_172997)	-19.0	NM_008325	15932.0	Mm.358608	NM_008325	ENSMUSG00000033540	Idua	6030426D08	iduronidase, alpha-L-	protein-coding	40.04	26.73	29.6	36.43	33.12	22.51	28.52	18.57	27.48
Merged-chr16-44142688-1	chr16	44142188	44143188	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028108, intron 1 of 4)	(C)n|Simple_repeat|Simple_repeat	2879.0	NM_028108	72117.0	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	19.45	12.9	3.7	14.84	10.26	7.23	5.28	6.19	2.5
Merged-chr8-126748219-1	chr8	126747719	126748719	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-100801.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	51.48	44.24	37.92	64.1	28.92	33.76	40.14	34.49	11.87
Merged-chr11-76506988-1	chr11	76506488	76507488	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198018, intron 1 of 21)	intron (NM_198018, intron 1 of 21)	2431.0	NM_198018	109934.0	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	4.58	3.23	0.0	4.72	0.47	4.02	4.22	0.0	0.62
Merged-chr10-52331051-1	chr10	52330551	52331551	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	51073.0	NM_053187	94221.0	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	2.86	10.14	9.25	2.02	6.06	12.86	3.17	7.96	2.5
Merged-chr9-123478191-1	chr9	123477691	123478691	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013860)	promoter-TSS (NM_013860)	-510.0	NM_013860	29806.0	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	21.17	11.52	11.1	14.17	6.06	8.04	11.62	10.61	13.12
Merged-chr10-119070610-1	chr10	119070110	119071110	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20111.0	NR_152787	102636674.0	Mm.399320	NR_152787	ENSMUSG00000112778	Gm33677	-	predicted gene, 33677	ncRNA	6.86	3.23	0.92	8.1	2.8	2.41	2.11	1.77	3.75
Merged-chr14-62118744-1	chr14	62118244	62119244	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	174235.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	3.43	1.84	0.92	12.82	7.46	6.43	7.39	2.65	3.75
Merged-chr11-106687534-1	chr11	106687034	106688034	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305158, intron 6 of 14)	intron (NM_001305158, intron 6 of 14)	27747.0	NM_001305158	18613.0	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	11.44	10.6	9.25	9.45	6.06	8.04	7.39	3.1	3.12
Merged-chr15-81016453-1	chr15	81015953	81016953	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_153049, exon 10 of 13)	exon (NM_153049, exon 10 of 13)	38688.0	NM_134091	105835.0	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.15	2.3	11.1	6.07	2.33	7.23	1.06	0.44	3.75
Merged-chr17-87283382-1	chr17	87282882	87283882	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_015506)	promoter-TSS (NR_015506)	496.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	204.8	175.1	171.12	236.15	169.81	193.71	156.32	144.15	99.3
Merged-chr1-134989561-1	chr1	134989061	134990061	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033409, intron 17 of 17)	intron (NM_001033409, intron 17 of 17)	26996.0	NM_001278115	67196.0	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	5.72	4.61	1.85	3.37	2.8	2.41	3.17	2.21	1.87
Merged-chr19-11954514-1	chr19	11954014	11955014	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11330.0	NM_001033174	76303.0	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	2.86	6.91	0.0	1.35	3.73	6.43	2.11	2.21	2.5
Merged-chr7-45919305-1	chr7	45918805	45919805	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001146346, intron 4 of 4)	intron (NM_001146346, intron 4 of 4)	1544.0	NM_001146346	13732.0	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	12.01	6.91	12.02	4.05	7.93	10.45	4.22	1.77	3.75
Merged-chr4-58511837-2	chr4	58511324	58512324	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010336, intron 1 of 3)	L1MB2|LINE|L1	-12421.0	NM_001290486	14745.0	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	12.01	18.43	20.35	18.22	13.53	15.27	24.29	14.15	9.99
Merged-chr7-126519695-1	chr7	126519195	126520195	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16258.0	NM_183020	233871.0	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	16.59	18.89	20.35	12.14	4.2	4.82	5.28	10.61	3.75
Merged-chr5-92605565-1	chr5	92605065	92606065	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175096, exon 2 of 2)	exon (NM_175096, exon 2 of 2)	2514.0	NM_175096	52331.0	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	7.44	0.92	4.62	10.8	2.33	3.22	3.17	2.21	6.25
Merged-chr3-84945104-1	chr3	84944604	84945604	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177774, intron 3 of 12)	intron (NM_001177774, intron 3 of 12)	-7107.0	NM_080428	50754.0	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	17.16	9.68	1.85	7.42	8.86	11.25	10.56	6.19	8.74
Merged-chr10-19006293-1	chr10	19005793	19006793	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 4 of 7)	MIRb|SINE|MIR	5670.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.58	7.83	2.77	4.72	4.67	0.0	8.45	2.21	9.99
Merged-chr19-3579892-1	chr19	3579392	3580392	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4143.0	NM_028999	52036.0	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	6.86	5.53	4.62	9.45	0.93	2.41	3.17	4.86	1.87
Merged-chr13-120320787-1	chr13	120320287	120321287	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	3925.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	2.29	1.38	7.4	3.37	0.0	1.61	2.11	1.33	1.25
Merged-chr3-136362800-1	chr3	136362300	136363300	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-36734.0	NM_001033350	242248.0	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	7.44	6.45	9.25	4.05	3.73	4.82	4.22	2.65	2.5
Merged-chr8-119686384-1	chr8	119685884	119686884	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023395, intron 6 of 6)	intron (NM_023395, intron 6 of 6)	-13625.0	NM_026922	69047.0	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	3.43	3.69	7.4	3.37	0.0	0.0	4.22	0.88	0.0
Merged-chr14-69802651-1	chr14	69802151	69803151	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153514, intron 1 of 9)	intron (NM_153514, intron 1 of 9)	2894.0	NM_153514	246710.0	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	2.29	4.15	12.95	3.37	4.2	1.61	3.17	3.98	7.49
Merged-chr14-51092257-1	chr14	51091757	51092757	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021472, intron 1 of 1)	intron (NM_021472, intron 1 of 1)	1180.0	NM_021472	58809.0	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	50.91	64.97	27.75	66.12	62.05	40.99	41.19	28.3	23.73
Merged-chr3-60138521-2	chr3	60138018	60139018	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	56649.0	NM_032400	84112.0	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	6.29	4.61	0.0	2.02	3.27	0.0	1.06	7.52	3.12
Merged-chr2-11113456-1	chr2	11112956	11113956	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58926.0	NM_008859	18761.0	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	5.15	3.23	2.77	2.7	1.4	1.61	5.28	0.0	1.87
Merged-chr4-155222344-1	chr4	155221844	155222844	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011385, exon 1 of 7)	exon (NM_011385, exon 1 of 7)	191.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	39.47	42.39	40.7	47.9	23.79	49.83	42.25	27.41	21.23
Merged-chr6-55054168-1	chr6	55053668	55054668	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_180678, intron 6 of 16)	intron (NM_180678, intron 6 of 16)	16167.0	NM_180678	353172.0	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	4.0	0.92	5.55	2.7	2.8	3.22	28.52	28.74	21.86
Merged-chr1-152756650-1	chr1	152756150	152757150	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081197, exon 2 of 2)	exon (NM_001081197, exon 2 of 2)	6099.0	NM_001081197	71281.0	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	13.16	17.97	12.02	11.47	11.66	14.47	16.9	17.69	7.49
Merged-chr2-103901689-1	chr2	103901189	103902189	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_131913, intron 1 of 6)	intron (NR_131913, intron 1 of 6)	738.0	NR_131913	100996933.0	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	5.15	2.3	1.85	4.72	4.67	3.22	3.17	3.54	0.0
Merged-chr3-57765185-1	chr3	57764685	57765685	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_130743, intron 2 of 9)	C-rich|Low_complexity|Low_complexity	29128.0	NR_130743	24017.0	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	14.87	12.9	11.1	10.12	6.53	20.09	10.56	7.07	10.62
Merged-chr1-94056194-1	chr1	94055694	94056694	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3641.0	NM_008798	18566.0	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	4.58	1.38	5.55	2.7	5.6	3.22	2.11	0.88	1.25
Merged-chr8-126751597-1	chr8	126751097	126752097	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-97423.0	NR_151740	414091.0	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	16.02	8.75	12.95	16.19	15.39	8.84	11.62	15.03	10.62
Merged-chr3-15470289-2	chr3	15469796	15470796	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-43869.0	NM_001002898	320832.0	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	3.43	1.84	7.4	2.7	5.13	1.61	6.34	7.07	6.25
Merged-chr12-52615904-1	chr12	52615404	52616404	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13582.0	NR_045910	73278.0	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	5.72	5.07	2.77	2.02	2.33	0.0	4.22	6.63	3.75
Merged-chr1-151688524-1	chr1	151688024	151689024	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_022018, intron 5 of 13)	T-rich|Low_complexity|Low_complexity	66203.0	NR_151474	102640772.0		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	72.65	74.19	47.17	53.3	37.32	53.05	77.1	68.09	34.97
Merged-chr3-69709874-1	chr3	69709374	69710374	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12181.0	NM_133787	97112.0	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	4.58	1.84	1.85	4.05	3.73	10.45	2.11	1.33	3.75
Merged-chr15-99825200-2	chr15	99824687	99825687	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113545, intron 3 of 10)	ID_B1|SINE|B4	-5038.0	NM_023063	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	28.03	23.5	24.05	33.06	15.39	19.29	11.62	16.36	7.49
Merged-chr8-83108754-1	chr8	83108254	83109254	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-56598.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	9.72	5.07	14.8	12.14	10.26	14.47	6.34	6.19	9.37
Merged-chr10-75834040-1	chr10	75833540	75834540	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010361, intron 1 of 4)	intron (NM_010361, intron 1 of 4)	841.0	NM_010361	14872.0	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	40.62	30.41	24.05	36.43	36.39	23.31	16.9	14.59	11.24
Merged-chr17-79568667-1	chr17	79568167	79569167	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46233.0	NM_201361	381110.0	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	1.14	3.69	0.0	3.37	4.67	3.22	6.34	4.42	0.62
Merged-chr9-60687587-1	chr9	60687087	60688087	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001146047)	promoter-TSS (NM_001146047)	-53.0	NM_001146047	102747.0	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	15.45	25.8	16.65	26.99	16.33	33.76	19.01	17.69	19.98
Merged-chr2-34958246-1	chr2	34957746	34958746	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009421, intron 4 of 10)	intron (NM_009421, intron 4 of 10)	3526.0	NM_009421	22029.0	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	2.86	4.15	5.55	7.42	3.27	0.8	3.17	1.77	3.12
Merged-chr11-120582931-1	chr11	120582431	120583431	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-1311.0	NM_133796	192662.0	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	38.33	33.64	44.4	31.71	19.13	53.05	28.52	44.22	39.97
Merged-chr2-32992298-1	chr2	32991798	32992798	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355201, intron 26 of 29)	intron (NM_001355201, intron 26 of 29)	-10215.0	NR_151460	56017.0	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	5.72	1.38	3.7	4.05	6.53	3.22	4.22	3.1	6.87
Merged-chr4-11704350-1	chr4	11703850	11704850	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010276)	promoter-TSS (NM_010276)	-97.0	NM_010276	14579.0	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	2.86	3.23	11.1	6.07	7.0	1.61	3.17	6.19	0.0
Merged-chr4-156252805-1	chr4	156252305	156253305	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355709, intron 2 of 10)	intron (NM_001355709, intron 2 of 10)	2537.0	NM_001355709	231004.0	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.0	3.23	3.7	2.02	1.87	3.22	3.17	2.65	5.0
Merged-chr8-83655361-1	chr8	83654861	83655861	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018771, intron 1 of 6)	B4|SINE|B4	2683.0	NM_018771	67903.0	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	10.3	17.51	13.87	15.52	11.66	22.51	32.74	23.88	24.36
Merged-chrX-140479390-1	chrX	140478890	140479890	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	22787.0	NM_021463	19139.0	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	2.29	2.3	0.92	4.05	1.87	0.0	0.0	0.0	0.0
Merged-chr4-11089252-1	chr4	11088752	11089752	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamSINE1|SINE|tRNA	-13047.0	NM_001085493	76947.0	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	5.72	12.44	0.0	5.4	7.93	4.82	2.11	1.77	2.5
Merged-chr13-23687273-1	chr13	23686773	23687773	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023422, intron 1 of 1)	intron (NM_023422, intron 1 of 1)	3074.0	NM_023422	68024.0	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	13.73	12.44	0.0	7.42	3.27	3.22	4.22	5.75	8.74
Merged-chr2-120094285-1	chr2	120093785	120094785	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133838, intron 5 of 5)	intron (NM_133838, intron 5 of 5)	60290.0	NM_133838	98878.0	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	6.86	5.53	3.7	7.42	7.93	4.02	5.28	2.65	8.74
Merged-chr15-59646399-1	chr15	59645899	59646899	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2255.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	44.05	40.55	27.75	39.81	30.79	26.53	28.52	20.34	34.35
Merged-chr8-31033504-1	chr8	31033004	31034004	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56023.0	NM_025869	66959.0	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.57	3.23	3.7	2.02	2.8	4.82	8.45	6.19	13.74
Merged-chr12-102176038-1	chr12	102175538	102176538	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	47311.0	NM_172152	238384.0	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	2.86	1.38	3.7	6.07	3.27	6.43	0.0	2.65	5.0
Merged-chr10-17422770-1	chr10	17422270	17423270	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-300458.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	4.58	1.84	1.85	7.42	6.06	3.22	2.11	1.33	2.5
Merged-chr4-54767338-1	chr4	54766838	54767838	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-180607.0	NM_172867	242466.0	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	6.29	1.38	5.55	5.4	4.2	3.22	2.11	5.31	0.0
Merged-chr2-101886639-1	chr2	101886139	101887139	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029635, intron 1 of 5)	intron (NM_029635, intron 1 of 5)	377.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	69.79	71.88	40.7	69.5	93.3	57.07	91.89	104.79	33.72
Merged-chr19-11777411-1	chr19	11776911	11777911	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_152220)	TTS (NM_152220)	6996.0	NM_025606	94063.0	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	8.01	4.15	1.85	4.05	6.06	9.65	6.34	2.65	5.0
Merged-chr11-76699825-1	chr11	76699325	76700325	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19952.0	NM_177709	237858.0	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	2.86	0.92	2.77	2.02	0.93	7.23	5.28	2.65	0.62
Merged-chr7-128133207-1	chr7	128132707	128133707	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021334, intron 6 of 29)	intron (NM_021334, intron 6 of 29)	3639.0	NM_021334	16411.0	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	60.64	73.26	36.07	57.35	57.38	43.4	59.15	63.23	67.45
Merged-chr14-46873935-1	chr14	46873435	46874435	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-9030.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	8.01	7.37	0.92	8.77	8.4	8.04	39.08	20.34	19.98
Merged-chr18-64758757-1	chr18	64758257	64759257	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-97757.0	NM_001001488	54670.0	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	4.0	4.15	0.0	3.37	2.8	0.8	6.34	2.21	3.75
Merged-chr10-127553674-1	chr10	127553174	127554174	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 59 of 88)	intron (NM_008512, intron 59 of 88)	-19115.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	3.43	1.84	0.0	4.05	3.73	9.65	2.11	1.33	8.74
Merged-chr5-64424957-1	chr5	64424457	64425457	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A0|LTR|ERVL-MaLR	42985.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.15	3.69	6.47	11.47	1.87	1.61	6.34	10.17	2.5
Merged-chr9-46091156-1	chr9	46090656	46091656	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	MTB_Mm|LTR|ERVL-MaLR	78336.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	16.59	5.07	3.7	8.1	8.86	14.47	22.18	7.52	15.61
Merged-chr19-10020152-1	chr19	10019652	10020652	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153790, intron 1 of 10)	ID_B1|SINE|B4	1958.0	NM_001347430	74760.0	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	31.46	33.64	48.1	34.41	31.26	41.8	59.15	45.1	33.72
Merged-chr16-73985118-1	chr16	73984618	73985618	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358493, intron 8 of 28)	intron (NM_001358493, intron 8 of 28)	356949.0	NR_030464	751561.0		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	4.0	5.99	1.85	2.02	6.53	0.8	4.22	5.31	0.0
Merged-chr11-113133558-1	chr11	113133058	113134058	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	68280.0	NR_015556	72386.0	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.14	1.38	1.85	2.7	0.93	1.61	2.11	1.33	5.0
Merged-chrX-48124914-1	chrX	48124414	48125414	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289729, intron 12 of 20)	intron (NM_001289729, intron 12 of 20)	16189.0	NM_133213	170745.0	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	2.29	1.38	1.85	1.35	1.4	4.02	2.11	0.44	1.25
Merged-chr3-96601513-2	chr3	96601016	96602016	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163170, intron 1 of 5)	intron (NM_001163170, intron 1 of 5)	383.0	NM_001163170	280411.0	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	24.03	13.82	12.95	32.39	16.33	24.11	36.97	11.5	13.74
Merged-chr15-97110845-1	chr15	97110345	97111345	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54889.0	NM_027052	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	5.15	4.15	7.4	5.4	5.6	3.22	4.22	7.07	0.62
Merged-chr6-71419073-1	chr6	71418573	71419573	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355745, intron 2 of 9)	intron (NM_001355745, intron 2 of 9)	21564.0	NM_001355745	68477.0	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	8.58	8.29	15.72	16.19	12.13	15.27	12.67	5.75	12.49
Merged-chr2-146385813-1	chr2	146385313	146386313	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	126191.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	5.72	6.91	1.85	8.1	7.93	4.02	0.0	4.86	7.49
Merged-chr3-104639663-1	chr3	104639163	104640163	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009196, intron 1 of 4)	intron (NM_009196, intron 1 of 4)	999.0	NM_009196	20501.0	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	8.01	6.91	1.85	6.75	9.8	8.84	9.51	7.52	1.25
Merged-chr2-117413525-1	chr2	117413025	117414025	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70648.0	NM_011246	19419.0	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	18.31	11.06	6.47	5.4	6.53	2.41	23.24	7.52	8.12
Merged-chr4-106301252-1	chr4	106300752	106301752	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-14961.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	25.17	22.12	10.17	22.27	20.53	26.53	12.67	9.73	13.12
Merged-chr11-3292261-1	chr11	3291761	3292761	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019574, intron 1 of 3)	intron (NM_019574, intron 1 of 3)	1804.0	NM_019574	56218.0	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	8.01	3.69	10.17	8.1	2.33	6.43	11.62	2.21	3.75
Merged-chr7-30419014-1	chr7	30418514	30419514	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011827, intron 1 of 3)	RMER4B|LTR|ERVK	840.0	NM_011827	23900.0	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	132.72	160.81	124.87	125.5	111.5	159.95	171.1	219.31	115.54
Merged-chr4-117267522-1	chr4	117267022	117268022	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029589, intron 3 of 3)	intron (NM_029589, intron 3 of 3)	15182.0	NM_029589	68777.0	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	6.29	2.3	4.62	6.07	1.87	0.0	0.0	2.65	5.0
Merged-chr11-118739671-1	chr11	118739171	118740171	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	MLT1I|LTR|ERVL-MaLR	21370.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	7.44	10.6	1.85	6.07	11.2	4.82	7.39	3.98	9.99
Merged-chr10-29445625-1	chr10	29445125	29446125	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-83183.0	NM_001110197	68031.0	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	7.44	7.83	7.4	2.02	6.53	9.65	6.34	1.77	6.87
Merged-chr2-155637584-1	chr2	155637084	155638084	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019828, intron 16 of 18)	intron (NM_019828, intron 16 of 18)	14704.0	NR_030757	735275.0		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	6.86	2.76	5.55	2.02	0.47	2.41	9.51	8.84	8.74
Merged-chr4-115890803-1	chr4	115890303	115891303	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001357060, exon 1 of 2)	5' UTR (NM_001357060, exon 1 of 2)	137.0	NM_001357060	76237.0	Mm.101606	NM_001357060	ENSMUSG00000034185	6430628N08Rik	-	RIKEN cDNA 6430628N08 gene	protein-coding	5.72	2.76	9.25	2.02	0.47	0.0	2.11	0.44	6.25
Merged-chr11-75976885-1	chr11	75976385	75977385	+	567.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23027.0	NM_198637	74230.0	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	4.0	3.69	1.85	6.07	7.0	8.04	3.17	1.33	8.12
Merged-chr7-73648183-1	chr7	73647683	73648683	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38380.0	NR_033604	244061.0	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	5.15	2.76	2.77	8.77	0.47	6.43	3.17	7.07	1.25
Merged-chr19-12722484-1	chr19	12721984	12722984	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	26694.0	NM_029550	64697.0	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	2.86	2.76	0.0	3.37	0.0	2.41	0.0	1.33	2.5
Merged-chr17-66112431-2	chr17	66111934	66112934	+	567.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037757, intron 1 of 10)	RMER15|LTR|ERVL	789.0	NM_001037757	68767.0	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	29.75	35.02	12.02	22.27	24.26	27.33	33.8	24.76	7.49
Merged-chr10-68373120-1	chr10	68372620	68373620	+	567.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-51978.0	NR_045357	75148.0	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	1.72	7.83	3.7	2.7	6.06	1.61	5.28	3.98	2.5
Merged-chr14-54936983-1	chr14	54936483	54937483	+	566.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029390, intron 1 of 3)	intron (NM_029390, intron 1 of 3)	486.0	NM_029390	67272.0	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.57	1.84	1.85	2.02	0.47	3.22	6.34	1.77	1.25
Merged-chr15-63555110-1	chr15	63554610	63555610	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-75502.0	NR_045279	432958.0	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	5.15	6.45	12.02	8.1	5.13	22.51	7.39	5.31	13.74
Merged-chr14-7850949-1	chr14	7850449	7851449	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081427, intron 1 of 45)	RMER5|LTR|ERV1	32992.0	NM_134080	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	4.0	5.53	3.7	2.7	6.06	8.04	7.39	5.31	13.74
Merged-chr1-136582776-1	chr1	136582276	136583276	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-42125.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	32.61	38.25	19.42	38.46	40.59	22.51	77.1	89.32	38.1
Merged-chr19-32932753-2	chr19	32932266	32933266	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	175189.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	6.29	7.37	2.77	10.8	10.73	8.04	15.84	4.86	13.74
Merged-chr1-85650008-2	chr1	85649508	85650508	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313712)	promoter-TSS (NM_001313712)	20.0	NM_001313714	20684.0	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	36.04	25.8	22.2	32.39	27.99	42.6	57.03	38.47	48.71
Merged-chr4-155733393-2	chr4	155732876	155733876	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026899, intron 4 of 4)	intron (NM_026899, intron 4 of 4)	-1428.0	NM_001101506	381582.0	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	129.86	112.43	135.97	109.98	93.3	126.19	158.43	217.55	75.57
Merged-chr1-132264833-1	chr1	132264333	132265333	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-33793.0	NM_144810	213417.0	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	1.72	0.92	4.62	4.05	2.8	4.82	4.22	2.21	1.25
Merged-chr19-4048037-1	chr19	4047537	4048537	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5816.0	NM_181796	14869.0	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	9.72	0.92	1.85	3.37	3.27	0.0	6.34	3.1	5.0
Merged-chr11-47439532-1	chr11	47439032	47440032	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-60230.0	NM_011891	24052.0	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	9.15	1.84	11.1	5.4	7.93	6.43	9.51	2.65	7.49
Merged-chr4-116709049-2	chr4	116708519	116709519	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025962)	promoter-TSS (NM_025962)	424.0	NR_151451	68394.0	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	30.89	21.2	18.5	42.51	20.99	46.62	40.14	38.03	17.49
Merged-chr4-63215942-1	chr4	63215442	63216442	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025685, intron 1 of 60)	CpG-9975	530.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	4.58	5.53	1.85	2.02	3.73	6.43	7.39	3.1	6.25
Merged-chr18-58599276-1	chr18	58598776	58599776	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 5 of 9)	intron (NM_001081072, intron 5 of 9)	43036.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	4.58	4.61	3.7	6.75	4.67	4.82	3.17	0.88	1.25
Merged-chr2-181737784-2	chr2	181737289	181738289	+	566.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22099.0	NM_001318924	18389.0	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	24.03	18.89	12.95	4.72	8.86	14.47	5.28	11.94	6.25
Merged-chr9-98614196-1	chr9	98613696	98614696	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12517.0	NM_025485	64655.0	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0.57	0.0	0.0	2.02	1.87	0.0	1.06	1.33	5.0
Merged-chr7-118283378-1	chr7	118282878	118283878	+	566.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M3|LINE|L1	39471.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.72	9.68	6.47	14.84	6.53	18.49	19.01	10.17	5.0
Merged-chr7-27402885-1	chr7	27402385	27403385	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_032610, exon 17 of 36)	exon (NM_032610, exon 17 of 36)	-6332.0	NM_001199236	80297.0	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	1.14	4.15	2.77	0.0	0.93	2.41	3.17	0.88	2.5
Merged-chr7-48881650-1	chr7	48881150	48882150	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360812)	promoter-TSS (NM_001360812)	-54.0	NM_001360812	108961.0	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	6.29	7.83	4.62	12.14	3.73	3.22	11.62	5.75	5.62
Merged-chr13-9766233-1	chr13	9765733	9766733	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001199141)	promoter-TSS (NM_001199141)	-912.0	NM_144516	66505.0	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	14.87	11.52	3.7	10.12	4.2	10.45	14.79	7.52	4.37
Merged-chr2-167250863-1	chr2	167250363	167251363	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10326.0	NM_008968	19223.0	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	11.44	8.29	5.55	14.17	6.06	3.22	10.56	8.84	6.25
Merged-chr13-69655591-2	chr13	69655083	69656083	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	43567.0	NM_145354	28114.0	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	6.86	0.92	0.92	6.75	3.27	0.8	2.11	0.88	4.37
Merged-chr16-17127486-1	chr16	17126986	17127986	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2284.0	NM_001358255	70458.0	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	1.72	1.84	9.25	4.05	2.33	3.22	0.0	3.54	2.5
Merged-chr14-43987646-2	chr14	43987132	43988132	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	18786.0	NM_001011876	630952.0		NM_001011876	ENSMUSG00000072598	Ang6	EG630952	angiogenin, ribonuclease A family, member 6	protein-coding	4.58	2.76	5.55	2.02	3.73	0.0	1.06	4.42	1.25
Merged-chr7-25424606-1	chr7	25424106	25425106	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015569, intron 4 of 6)	intron (NR_015569, intron 4 of 6)	-11720.0	NM_153576	232983.0	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	1.72	4.61	0.0	4.05	0.47	0.0	1.06	0.88	3.75
Merged-chr14-22308233-1	chr14	22307733	22308733	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	234565.0	NR_046307	74896.0	Mm.444661	NR_046307	ENSMUSG00000114412	4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.0	3.23	3.7	3.37	0.47	1.61	2.11	3.1	3.75
Merged-chr8-111030229-1	chr8	111029729	111030729	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190786, intron 1 of 11)	B1_Mur1|SINE|Alu	1522.0	NM_001190786	234733.0	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	25.17	35.02	24.97	10.8	13.06	9.65	42.25	49.52	16.86
Merged-chr15-73643028-1	chr15	73642528	73643528	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18284.0	NM_001033219	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	24.6	16.59	22.2	24.96	15.86	13.66	23.24	26.53	16.86
Merged-chr2-59137487-1	chr2	59136987	59137987	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	23196.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	4.58	0.92	9.25	4.72	4.2	4.82	1.06	3.98	6.25
Merged-chr18-4068868-1	chr18	4068368	4069368	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-96964.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	4.58	5.99	3.7	6.07	4.67	3.22	9.51	6.19	9.99
Merged-chr13-52633225-1	chr13	52632725	52633725	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011518, intron 9 of 13)	RSINE1|SINE|B4	36343.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	5.72	7.83	12.02	6.75	2.33	19.29	10.56	6.19	10.62
Merged-chr2-36203506-1	chr2	36203006	36204006	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26920.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	2.29	0.46	0.0	2.02	1.4	1.61	2.11	2.65	1.25
Merged-chr2-144730518-1	chr2	144730018	144731018	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025314, intron 4 of 5)	intron (NM_025314, intron 4 of 5)	-93148.0	NM_025490	66328.0	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	2.86	3.69	3.7	4.05	2.8	4.02	4.22	0.0	6.25
Merged-chr11-4188053-1	chr11	4187553	4188553	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134023, intron 1 of 8)	intron (NM_134023, intron 1 of 8)	1220.0	NM_134023	103724.0	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	69.79	58.52	32.37	73.54	63.45	24.92	50.7	45.1	14.36
Merged-chr2-116907406-1	chr2	116906906	116907906	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040335, intron 2 of 3)	MTD|LTR|ERVL-MaLR	7254.0	NR_040335	320975.0	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.01	5.99	8.32	4.05	3.73	5.63	4.22	5.31	2.5
Merged-chr10-80881479-1	chr10	80880979	80881979	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081688, intron 1 of 17)	B3|SINE|B2	1663.0	NM_001081688	432478.0	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	7.44	2.76	1.85	6.75	1.4	4.82	1.06	0.0	0.0
Merged-chrX-78518567-1	chrX	78518067	78519067	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027322, intron 2 of 3)	intron (NM_027322, intron 2 of 3)	65238.0	NM_001164275	546336.0	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	3.43	1.84	1.85	8.1	5.13	6.43	8.45	3.98	1.25
Merged-chr4-100028873-1	chr4	100028373	100029373	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-66918.0	NM_013845	26563.0	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	8.58	5.99	2.77	3.37	0.93	3.22	1.06	0.44	5.0
Merged-chr1-183637142-1	chr1	183636642	183637642	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111835.0	NR_151520	102637191.0	Mm.417076	NR_151520	ENSMUSG00000103305	Gm34068	-	predicted gene, 34068	ncRNA	3.43	0.46	0.0	4.05	2.33	1.61	11.62	6.63	11.24
Merged-chr6-99211887-1	chr6	99211387	99212387	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001197321, intron 2 of 17)	intron (NM_001197321, intron 2 of 17)	54628.0	NM_001197321	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.29	2.3	6.47	4.05	2.33	1.61	2.11	3.1	2.5
Merged-chr4-111886783-1	chr4	111886283	111887283	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145551, intron 11 of 14)	intron (NM_145551, intron 11 of 14)	16013.0	NM_145551	230612.0	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	2.29	1.38	1.85	2.02	1.87	4.02	0.0	6.63	0.62
Merged-chr4-94017948-1	chr4	94017448	94018448	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	538848.0	NM_026368	67770.0	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	2.29	2.3	1.85	4.05	3.73	4.82	5.28	5.75	0.0
Merged-chr2-158375614-1	chr2	158375114	158376114	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175692)	promoter-TSS (NM_175692)	-24.0	NM_175692	319317.0	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.57	1.84	1.85	1.35	2.33	3.22	1.06	2.21	1.87
Merged-chr6-92787523-1	chr6	92787023	92788023	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175314, intron 27 of 29)	intron (NM_175314, intron 27 of 29)	-81339.0	NM_001081146	243548.0	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	1.72	0.46	0.0	2.02	0.93	3.22	0.0	0.44	1.25
Merged-chr13-12423407-1	chr13	12422907	12423907	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144835, intron 28 of 44)	intron (NM_144835, intron 28 of 44)	28032.0	NM_144835	217995.0	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	3.43	6.45	12.95	4.05	5.13	8.04	5.28	3.54	7.49
Merged-chr3-105811327-1	chr3	105810827	105811827	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4240.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	6.86	6.91	3.7	9.45	4.67	13.66	5.28	13.27	3.75
Merged-chr3-31424883-1	chr3	31424383	31425383	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114564.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	2.29	6.91	0.0	10.12	12.6	19.29	5.28	4.42	5.0
Merged-chr5-134486099-1	chr5	134485599	134486599	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29383.0	NM_001081464	57080.0	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	1.14	1.84	3.7	2.7	0.93	0.8	2.11	0.44	2.5
Merged-chr14-37033419-1	chr14	37032919	37033919	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15595.0	NM_001301694	57811.0	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	4.0	3.69	5.55	1.35	4.67	0.0	3.17	0.0	1.25
Merged-chr6-149342914-1	chr6	149342414	149343414	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	33500.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	4.0	4.15	1.85	2.02	0.93	3.22	17.96	8.4	6.87
Merged-chr10-120364327-1	chr10	120363827	120364827	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010441, intron 4 of 4)	intron (NM_010441, intron 4 of 4)	-25196.0	NR_040626	320626.0	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	9.15	12.44	12.02	10.12	14.46	16.08	21.12	21.67	4.37
Merged-chr15-80026389-1	chr15	80025889	80026889	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11581.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	19.45	10.14	9.25	26.99	11.66	9.65	10.56	4.42	3.75
Merged-chr9-32582245-1	chr9	32581745	32582745	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40793.0	NM_008026	14247.0	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.58	2.3	2.77	2.7	5.6	0.0	4.22	0.44	5.0
Merged-chr4-107167918-1	chr4	107167418	107168418	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025617, intron 2 of 4)	intron (NM_025617, intron 2 of 4)	10448.0	NM_025617	66526.0	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	3.43	3.23	5.55	4.05	4.67	16.08	6.34	5.75	7.49
Merged-chr7-43531048-1	chr7	43530548	43531548	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111058, intron 3 of 6)	L1MB7|LINE|L1	2123.0	NM_001111058	12489.0	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	54.35	49.3	44.4	54.65	43.85	53.05	34.85	35.37	38.1
Merged-chr9-70252190-1	chr9	70251690	70252690	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_181072, intron 1 of 27)	intron (NM_181072, intron 1 of 27)	44840.0	NM_181072	71602.0	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	1.72	3.23	7.4	1.35	3.27	8.04	4.22	2.65	3.75
Merged-chr14-62864453-1	chr14	62863953	62864953	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-1089.0	NR_105860	102465311.0		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	45.19	46.08	49.02	29.01	33.59	61.09	58.09	39.35	35.6
Merged-chr9-99088361-1	chr9	99087861	99088861	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029094, intron 8 of 23)	intron (NM_029094, intron 8 of 23)	51850.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	18.88	24.42	22.2	16.19	21.93	32.15	29.57	23.88	13.74
Merged-chr17-47767702-1	chr17	47767202	47768202	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18042.0	NM_011549	21425.0	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	90.38	114.74	97.12	131.57	127.36	153.52	162.65	126.02	84.31
Merged-chr5-36710529-1	chr5	36710029	36711029	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14508.0	NM_001081232	320661.0	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	11.44	6.45	11.1	12.14	6.06	11.25	9.51	10.17	6.25
Merged-chr13-23570763-1	chr13	23570263	23571263	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178196)	promoter-TSS (NM_178196)	457.0	NM_178187	319166.0	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	213.38	200.44	181.29	208.49	200.13	198.54	163.71	233.91	126.78
Merged-chr4-130799792-2	chr4	130799295	130800295	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011520, intron 1 of 4)	intron (NM_011520, intron 1 of 4)	7258.0	NM_011520	20970.0	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	249.99	235.92	177.59	221.31	164.21	231.49	217.57	274.59	123.03
Merged-chr4-44911167-1	chr4	44910667	44911667	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138590, intron 6 of 8)	intron (NM_138590, intron 6 of 8)	-70227.0	NM_080289	76238.0	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	6.86	4.61	3.7	9.45	6.53	9.65	8.45	3.54	5.62
Merged-chr2-142865615-1	chr2	142865115	142866115	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355123, intron 1 of 26)	intron (NM_001355123, intron 1 of 26)	35849.0	NM_001081133	16558.0	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	2.29	4.61	3.7	14.17	6.53	6.43	0.0	1.33	1.87
Merged-chr1-55618992-1	chr1	55618492	55619492	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	213046.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	2.86	3.69	3.7	4.05	4.2	1.61	1.06	0.0	2.5
Merged-chr2-153158515-2	chr2	153158002	153159002	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-2799.0	NM_133847	99237.0	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	2.86	11.06	14.8	2.02	3.27	5.63	10.56	3.1	8.74
Merged-chr11-101265427-1	chr11	101264927	101265927	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175638, exon 6 of 19)	exon (NM_175638, exon 6 of 19)	4860.0	NM_175638	69847.0	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	2.29	0.92	0.0	0.67	0.0	1.61	2.11	1.33	0.0
Merged-chr17-28904929-1	chr17	28904429	28905429	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_045457)	promoter-TSS (NR_045457)	-336.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	2.29	2.3	5.55	2.7	0.47	0.0	3.17	1.77	0.0
Merged-chr12-69890288-1	chr12	69889788	69890788	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_201519, intron 1 of 30)	L2a|LINE|L2	-2817.0	NM_178628	73991.0	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	2.29	2.3	5.55	5.4	5.6	4.82	4.22	0.0	3.75
Merged-chr2-92389287-1	chr2	92388787	92389787	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011162, intron 2 of 11)	CpG	-1841.0	NR_105966	102466783.0		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	1.72	1.38	3.7	3.37	0.47	12.86	3.17	0.88	1.25
Merged-chr17-10772448-1	chr17	10771948	10772948	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	67743.0	NM_027032	69310.0	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	2.86	5.99	3.7	4.05	2.8	3.22	3.17	1.77	3.75
Merged-chr9-70502781-2	chr9	70502283	70503283	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357494, intron 2 of 14)	intron (NM_001357494, intron 2 of 14)	595.0	NM_001357494	93836.0	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	151.59	186.16	172.04	140.34	133.89	121.37	262.99	222.41	111.17
Merged-chr17-34578236-1	chr17	34577736	34578736	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010929, intron 18 of 29)	intron (NM_010929, intron 18 of 29)	-11570.0	NM_134116	106512.0	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	4.0	1.84	1.85	2.7	3.73	0.0	6.34	1.33	5.0
Merged-chr10-81518690-1	chr10	81518190	81519190	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010304, intron 1 of 6)	B3|SINE|B2	5535.0	NM_010304	14676.0	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	2.29	4.15	0.92	6.75	4.2	4.82	6.34	3.98	3.12
Merged-chr13-114370281-1	chr13	114369781	114370781	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010887, intron 1 of 4)	MTD|LTR|ERVL-MaLR	17813.0	NM_010887	17993.0	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	3.43	8.75	7.4	4.05	1.4	4.02	2.11	6.19	8.12
Merged-chr16-92732635-1	chr16	92732135	92733135	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	-35306.0	NM_009821	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	1.72	5.53	4.62	8.77	5.6	4.82	6.34	3.1	5.62
Merged-chr2-36230014-1	chr2	36229514	36230514	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-412.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	32.04	31.79	29.6	41.83	35.45	29.74	58.09	38.91	9.99
Merged-chr9-62810788-1	chr9	62810288	62811288	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010193, intron 1 of 1)	intron (NM_010193, intron 1 of 1)	860.0	NM_010193	14155.0	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	45.76	54.83	47.17	62.75	51.32	36.97	47.53	32.28	20.61
Merged-chr3-105836185-1	chr3	105835685	105836685	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	20618.0	NR_045845	433637.0	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	12.59	11.06	16.65	13.49	12.13	11.25	6.34	9.29	6.25
Merged-chr12-4871671-1	chr12	4871171	4872171	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033488, intron 1 of 13)	intron (NM_001033488, intron 1 of 13)	2688.0	NM_001033488	432628.0	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	4.0	5.07	9.25	4.05	5.13	8.04	8.45	2.65	13.74
Merged-chr6-123261701-1	chr6	123261201	123262201	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010819)	promoter-TSS (NM_010819)	-406.0	NM_001163161	17474.0	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	21.74	36.86	5.55	48.58	47.58	46.62	22.18	21.67	27.48
Merged-chr12-104247751-1	chr12	104247251	104248251	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_033450)	promoter-TSS (NR_033450)	-145.0	NR_033450	546546.0	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	3.43	5.99	5.55	2.7	4.67	3.22	4.22	3.54	3.75
Merged-chr4-110833019-1	chr4	110832519	110833519	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001284190, intron 3 of 12)	RMER19B|LTR|ERVK	435321.0	NM_030231	78933.0	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	17.16	10.6	8.32	6.75	3.73	6.43	2.11	1.77	1.87
Merged-chr5-99230530-2	chr5	99229994	99230994	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_181318, intron 8 of 13)	L1ME2|LINE|L1	22433.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	24.03	14.28	34.22	16.19	9.33	19.29	24.29	13.27	17.49
Merged-chrX-155623712-1	chrX	155623212	155624212	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001093750)	promoter-TSS (NM_001093750)	-385.0	NM_001093750	211612.0	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	3.43	1.38	1.85	2.7	0.47	1.61	0.0	3.98	1.87
Merged-chr2-75687558-1	chr2	75687058	75688058	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010902, intron 1 of 4)	intron (NM_010902, intron 1 of 4)	17105.0	NR_132727	18024.0	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	35.47	31.79	27.75	26.31	19.13	35.37	34.85	21.67	23.11
Merged-chr9-50601849-1	chr9	50601349	50602349	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025848, intron 1 of 3)	MTD|LTR|ERVL-MaLR	2000.0	NM_025848	66925.0	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	23.45	37.32	58.27	37.78	31.26	46.62	38.02	33.16	41.22
Merged-chr9-121477428-2	chr9	121476896	121477896	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	18298.0	NM_001284508	12424.0	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	2.29	1.38	7.4	0.0	5.13	0.0	4.22	0.44	1.25
Merged-chr19-59342062-2	chr19	59341572	59342572	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033222, intron 1 of 4)	intron (NM_001033222, intron 1 of 4)	3708.0	NM_001033222	107368.0	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	20.02	24.88	14.8	16.87	6.53	14.47	8.45	10.61	9.37
Merged-chr7-120327740-1	chr7	120327240	120328240	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177213)	promoter-TSS (NM_177213)	-944.0	NM_177213	320631.0	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	3.43	1.84	0.0	2.02	0.47	4.82	3.17	2.65	6.25
Merged-chr1-170292621-1	chr1	170292121	170293121	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	13711.0	NM_001198955	665574.0	Mm.65316	NM_001198955	ENSMUSG00000102752	Gm7694	EG665574	predicted gene 7694	protein-coding	1.14	1.84	0.0	2.7	2.33	1.61	1.06	2.65	5.0
Merged-chr5-28166833-1	chr5	28166333	28167333	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010134, exon 1 of 2)	exon (NM_010134, exon 1 of 2)	1137.0	NM_010134	13799.0	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	4.0	0.46	0.92	1.35	0.93	0.8	3.17	1.77	1.87
Merged-chr9-70841567-1	chr9	70841067	70842067	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	L1ME3|LINE|L1	93241.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	100.68	101.83	87.87	101.88	70.44	88.42	100.34	107.45	68.7
Merged-chr8-88175437-1	chr8	88174937	88175937	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-23776.0	NM_001164499	214627.0	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	6.86	5.07	3.7	6.75	4.2	4.02	3.17	2.65	3.75
Merged-chr14-37164771-1	chr14	37164271	37165271	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57C2|LTR|ERV1	-29449.0	NM_078478	66092.0	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	21.17	23.5	15.72	16.87	18.66	18.49	17.96	19.9	21.86
Merged-chr13-107893227-1	chr13	107892727	107893727	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2c|LINE|L2	-3163.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	26.89	21.2	41.62	23.62	12.13	17.68	13.73	15.03	21.86
Merged-chr10-122528434-1	chr10	122527934	122528934	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	41457.0	NR_040616	319272.0	Mm.411763	NR_040616	ENSMUSG00000112095	A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	2.86	3.23	0.0	8.77	5.6	3.22	3.17	5.31	1.25
Merged-chr4-129065737-1	chr4	129065237	129066237	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	ID4_|SINE|ID	7466.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	53.2	52.07	58.27	29.01	28.46	40.19	49.64	58.81	53.08
Merged-chr2-116066249-1	chr2	116065749	116066749	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_153841)	promoter-TSS (NR_153841)	-976.0	NR_153841	654793.0	Mm.448948	NR_153841		G630016G05Rik	-	RIKEN cDNA G630016G05 gene	ncRNA	4.58	0.92	1.85	4.05	2.33	0.0	2.11	0.0	0.0
Merged-chr11-70458908-1	chr11	70458408	70459408	+	566.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001348337)	promoter-TSS (NM_001348337)	-525.0	NM_001348337	574428.0	Mm.425692	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	171.04	169.11	139.67	209.84	172.61	150.31	237.64	245.84	149.89
Merged-chr5-77061614-1	chr5	77061114	77062114	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027970)	TTS (NM_027970)	33653.0	NM_001159901	74318.0	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.0	0.46	3.7	2.02	2.33	1.61	4.22	4.42	3.75
Merged-chr10-95678378-1	chr10	95677878	95678878	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-114232.0	NM_001358996	71207.0	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP-2|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	156.17	140.54	72.15	151.81	110.56	139.06	85.55	122.48	81.81
Merged-chr3-59201589-1	chr3	59201089	59202089	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177855, intron 15 of 43)	intron (NM_177855, intron 15 of 43)	-6485.0	NM_001302203	84111.0	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	24.6	21.2	10.17	22.94	15.86	16.08	11.62	9.29	7.49
Merged-chr9-31400537-1	chr9	31400037	31401037	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359654, intron 10 of 25)	intron (NM_001359654, intron 10 of 25)	14345.0	NM_001359654	235134.0	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	2.29	2.76	0.0	6.07	0.93	4.82	3.17	1.33	12.49
Merged-chr7-101599508-1	chr7	101599008	101600008	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	HAL1ME|LINE|L1	-18347.0	NM_019915	11872.0	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	35.47	39.63	29.6	51.28	23.79	32.15	76.05	62.79	33.72
Merged-chr6-115524634-1	chr6	115524134	115525134	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20070.0	NM_199033	381802.0	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	4.58	0.92	1.85	2.7	2.8	2.41	1.06	2.65	1.25
Merged-chr1-133046791-1	chr1	133046291	133047291	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001099276, intron 1 of 32)	intron (NM_001099276, intron 1 of 32)	779.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	5.15	3.23	5.55	7.42	1.4	4.02	8.45	5.31	1.25
Merged-chr2-150834066-1	chr2	150833566	150834566	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 12 of 12)	intron (NR_151505, intron 12 of 12)	8504.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	13.16	5.07	20.35	5.4	7.93	11.25	5.28	4.86	5.0
Merged-chr11-115184147-1	chr11	115183647	115184647	+	566.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025400, intron 4 of 6)	B4|SINE|B4	3169.0	NM_025400	66176.0	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	4.58	5.99	5.55	8.1	2.33	5.63	9.51	11.05	2.5
Merged-chr10-69308089-1	chr10	69307589	69308589	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER30|DNA|hAT-Charlie	44823.0	NM_007659	12534.0	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	8.01	17.51	29.6	16.87	11.66	22.51	26.4	23.43	19.36
Merged-chr1-55210281-1	chr1	55209781	55210781	+	566.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356287, intron 1 of 7)	intron (NM_001356287, intron 1 of 7)	16501.0	NM_001356288	74013.0	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	2.29	4.15	0.92	6.75	5.6	0.0	4.22	1.77	5.0
Merged-chr16-44780846-1	chr16	44780346	44781346	+	565.799988	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	15110.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	13.16	6.45	6.47	14.17	7.46	8.04	3.17	3.98	0.62
Merged-chr13-54758158-2	chr13	54757666	54758666	+	565.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_033610)	TTS (NM_033610)	-8292.0	NM_012014	26913.0	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	6.86	2.76	0.0	3.37	3.27	6.43	5.28	3.54	6.87
Merged-chr17-73301495-2	chr17	73300996	73301996	+	565.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	97800.0	NM_001033444	381122.0	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	6.86	5.53	5.55	14.84	0.93	0.8	2.11	3.54	2.5
Merged-chr7-45019106-2	chr7	45018606	45019606	+	565.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001360132)	promoter-TSS (NM_001360132)	-364.0	NM_001360132	20130.0	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	17.16	19.35	37.92	16.19	15.86	37.78	26.4	14.15	28.73
Merged-chr3-144203526-2	chr3	144203022	144204022	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010723, intron 1 of 4)	intron (NM_010723, intron 1 of 4)	-1126.0	NM_001161769	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	29.17	27.65	29.6	11.47	19.59	12.86	27.46	23.88	31.23
Merged-chr4-85801994-1	chr4	85801494	85802494	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-251921.0	NM_029967	77739.0	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	8.01	0.46	0.0	2.02	1.87	4.82	1.06	3.1	0.0
Merged-chr6-137397520-1	chr6	137397020	137398020	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011216, intron 10 of 26)	intron (NM_011216, intron 10 of 26)	-13201.0	NM_001164402	19277.0	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	5.72	6.45	1.85	3.37	3.73	0.0	5.28	0.88	1.25
Merged-chr3-145928340-1	chr3	145927840	145928840	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009740, intron 1 of 2)	MIRb|SINE|MIR	4078.0	NM_009740	12042.0	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	6.86	7.37	11.1	9.45	4.67	14.47	3.17	4.86	12.49
Merged-chr15-77798828-1	chr15	77798328	77799328	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022410, intron 3 of 40)	intron (NM_022410, intron 3 of 40)	-41818.0	NM_001357895	239552.0	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	16.02	31.79	43.47	20.92	26.59	24.92	25.35	28.3	19.98
Merged-chr1-157416001-1	chr1	157415501	157416501	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027984, intron 2 of 2)	intron (NR_027984, intron 2 of 2)	-3406.0	NM_177644	226525.0	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	13.73	9.22	9.25	21.59	10.26	45.01	5.28	5.75	13.74
Merged-chr2-52942995-1	chr2	52942495	52943495	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	85127.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	142.44	133.63	74.0	169.35	150.22	147.09	165.82	145.47	79.32
Merged-chr17-71186859-1	chr17	71186359	71187359	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022882, intron 1 of 19)	PB1D7|SINE|Alu	2881.0	NM_022882	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	8.01	14.28	9.25	14.17	15.39	8.04	9.51	13.27	15.61
Merged-chr10-21425936-1	chr10	21425436	21426436	+	565.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	48636.0	NM_178713	237320.0	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	2.86	2.3	4.62	0.67	3.27	1.61	23.24	22.55	7.49
Merged-chr2-172477028-1	chr2	172476528	172477528	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4474.0	NM_029608	76426.0	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	1.72	1.84	4.62	4.05	1.4	1.61	2.11	0.44	1.87
Merged-chr15-59622778-1	chr15	59622278	59623278	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25876.0	NM_144549	211770.0	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.29	2.3	0.92	5.4	0.93	8.04	6.34	3.54	1.87
Merged-chr13-37600979-1	chr13	37600479	37601479	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-225059.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	77.23	52.99	49.02	69.5	53.18	57.87	100.34	88.43	56.21
Merged-chr17-4840302-2	chr17	4839815	4840815	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-154759.0	NM_001085355	239985.0	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.0	6.91	9.25	5.4	4.67	7.23	2.11	4.42	5.0
Merged-chr13-59856557-2	chr13	59856069	59857069	+	565.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33422.0	NM_153538	214290.0	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	30.89	37.32	25.9	45.21	48.05	53.05	17.96	7.96	5.0
Merged-chr7-127744481-1	chr7	127743981	127744981	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2294.0	NM_172748	233902.0	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	12.01	11.52	18.5	24.29	12.13	24.11	20.07	19.01	24.98
Merged-chr13-112767650-1	chr13	112767150	112768150	+	565.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33127.0	NM_008903	19012.0	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.57	3.23	0.0	2.02	3.27	1.61	4.22	3.98	3.12
Merged-chr7-33982498-1	chr7	33981998	33982998	+	565.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	IAPEY4_LTR|LTR|ERVK	31444.0	NM_001276475	233099.0	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.0	1.38	0.0	1.35	0.47	0.0	2.11	0.0	0.0
Merged-chr13-112397679-2	chr13	112397165	112398165	+	565.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66405.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	204.22	207.81	125.79	86.36	80.24	46.62	117.24	130.88	62.45
Merged-chr5-137074296-2	chr5	137073777	137074777	+	565.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2005.0	NM_008871	18787.0	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.0	4.61	3.7	8.1	4.2	1.61	5.28	5.75	5.62
Merged-chr7-126625996-2	chr7	126625491	126626491	+	565.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_019738)	promoter-TSS (NM_019738)	-521.0	NM_019738	56312.0	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	32.61	17.05	17.57	38.46	23.79	49.83	57.03	44.66	34.35
Merged-chr4-3081308-1	chr4	3080808	3081808	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-90775.0	NM_001167534	100312470.0	Mm.480297	NM_001167534	ENSMUSG00000115072	Vmn1r2	Gm11776	vomeronasal 1 receptor 2	protein-coding	1.72	2.3	4.62	6.07	6.06	12.86	3.17	5.31	3.75
Merged-chr2-16357670-1	chr2	16357170	16358170	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026162, intron 1 of 13)	intron (NM_026162, intron 1 of 13)	1366.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	6.29	2.76	7.4	1.35	3.73	5.63	3.17	2.21	3.75
Merged-chr14-105198684-1	chr14	105198184	105199184	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21357.0	NM_134077	74213.0	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	4.0	3.23	1.85	4.05	1.87	1.61	0.0	3.1	0.0
Merged-chr12-51673386-1	chr12	51672886	51673886	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001172098, intron 1 of 15)	RMER19B|LTR|ERVK	-17580.0	NM_001329699	11782.0	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	6.86	10.6	9.25	11.47	8.4	20.9	23.24	18.57	7.49
Merged-chr8-46781300-1	chr8	46780800	46781800	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	41555.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	17.73	12.44	26.82	8.77	6.06	12.86	25.35	17.24	11.87
Merged-chr13-24920557-1	chr13	24920057	24921057	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172532, intron 4 of 9)	intron (NM_172532, intron 4 of 9)	14957.0	NR_045182	73326.0	Mm.458692	NR_045182	ENSMUSG00000086796	4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	4.0	1.38	3.7	4.05	0.47	0.0	3.17	2.65	0.62
Merged-chr4-83384266-1	chr4	83383766	83384766	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045450, intron 2 of 2)	intron (NR_045450, intron 2 of 2)	6402.0	NR_045450	790913.0	Mm.406752	NR_045450	ENSMUSG00000086321	Gm11413	-	predicted gene 11413	ncRNA	4.0	0.0	0.0	0.67	3.73	1.61	0.0	4.42	2.5
Merged-chr13-52535750-1	chr13	52535250	52536250	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4914.0	NM_001024474	68203.0	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	10.3	3.69	7.4	4.05	3.27	4.82	6.34	0.88	0.0
Merged-chr19-45015665-1	chr19	45015165	45016165	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145503, intron 1 of 4)	CpG	455.0	NM_001130525	226154.0	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	12.59	9.22	6.47	18.22	8.86	20.9	11.62	6.19	1.25
Merged-chr15-3994944-1	chr15	3994444	3995444	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145930, intron 1 of 5)	intron (NM_145930, intron 1 of 5)	808.0	NM_145930	106064.0	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	77.23	93.08	42.55	59.38	71.84	38.58	80.27	116.73	26.23
Merged-chr13-20185684-1	chr13	20185184	20186184	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080288, intron 2 of 21)	intron (NM_080288, intron 2 of 21)	95177.0	NM_080288	140580.0	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	65.79	85.25	47.17	74.22	63.91	67.52	72.88	87.99	44.34
Merged-chr3-95494019-1	chr3	95493519	95494519	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037737, intron 20 of 21)	B4A|SINE|B4	-5191.0	NM_007802	13038.0	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	24.6	19.35	11.1	28.34	20.99	22.51	45.42	39.35	19.36
Merged-chr19-31756221-1	chr19	31755721	31756721	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013833, intron 1 of 17)	intron (NM_001013833, intron 1 of 17)	8812.0	NM_001013833	19091.0	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	1.14	2.3	1.85	1.35	2.8	3.22	1.06	4.42	6.25
Merged-chr6-115316012-1	chr6	115315512	115316512	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger7|DNA|TcMar-Tigger	-44939.0	NM_001127330	19016.0	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	14.3	13.36	12.02	19.57	7.0	8.84	13.73	9.73	7.49
Merged-chr5-120522871-1	chr5	120522371	120523371	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177595, intron 8 of 13)	intron (NM_001177595, intron 8 of 13)	11679.0	NM_001177594	170756.0	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	10.3	8.29	2.77	12.14	7.46	10.45	10.56	7.96	13.74
Merged-chr10-115184908-1	chr10	115184408	115185408	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_173391, exon 1 of 11)	5' UTR (NM_173391, exon 1 of 11)	114.0	NM_173391	216343.0	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	1.14	2.3	0.0	3.37	0.47	0.0	1.06	4.86	1.25
Merged-chr15-73506430-2	chr15	73505933	73506933	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6127.0	NR_152151	105841.0	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	6.29	5.07	3.7	3.37	5.6	6.43	6.34	5.75	5.0
Merged-chr19-34539613-1	chr19	34539113	34540113	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11081.0	NM_008332	15958.0	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	2.29	1.38	1.85	2.02	1.87	4.82	0.0	0.88	1.87
Merged-chr11-52283392-2	chr11	52282911	52283911	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001313981)	promoter-TSS (NM_001313981)	-397.0	NM_001313981	21414.0	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	4.58	0.0	0.0	0.67	0.93	0.0	4.22	0.0	6.25
Merged-chr10-80939413-1	chr10	80938913	80939913	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9322.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	8.58	7.83	6.47	18.89	11.2	19.29	10.56	11.5	1.25
Merged-chr2-112775011-1	chr2	112774511	112775511	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319156, intron 47 of 103)	intron (NM_001319156, intron 47 of 103)	156594.0	NM_001355631	74268.0	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	2.86	0.92	5.55	2.02	0.93	0.0	0.0	2.65	1.87
Merged-chr18-10726923-1	chr18	10726423	10727423	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144860, intron 1 of 20)	intron (NM_144860, intron 1 of 20)	1298.0	NM_144860	225164.0	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	58.35	83.86	65.67	71.52	85.37	113.33	70.76	65.44	68.7
Merged-chr4-33291067-1	chr4	33290567	33291567	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-19244.0	NM_011884	24018.0	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	13.16	19.81	25.9	9.45	6.53	10.45	10.56	7.07	16.24
Merged-chr19-47259766-2	chr19	47259264	47260264	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001164717)	TTS (NM_001164717)	13825.0	NR_105961	102466782.0		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	4.0	1.84	5.55	4.72	0.93	1.61	2.11	0.88	5.62
Merged-chr10-111171410-1	chr10	111170910	111171910	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003717, intron 1 of 22)	intron (NM_001003717, intron 1 of 22)	6608.0	NM_175489	237542.0	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	12.01	5.07	5.55	4.72	6.53	6.43	8.45	8.84	6.25
Merged-chr13-54593829-1	chr13	54593329	54594329	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001347512, exon 6 of 6)	3' UTR (NM_001347512, exon 6 of 6)	3598.0	NM_025933	67044.0	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	15.45	7.83	9.25	9.45	7.0	8.04	5.28	6.63	12.49
Merged-chr13-66300138-1	chr13	66299638	66300638	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	140980.0	NM_183119	76803.0	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	3.43	3.23	5.55	6.75	2.8	6.43	3.17	0.88	5.0
Merged-chr9-106303204-1	chr9	106302704	106303704	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	22143.0	NM_027354	70235.0	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	1.14	2.3	12.95	4.05	3.27	1.61	2.11	3.1	1.25
Merged-chr7-116307013-1	chr7	116306513	116307513	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305185, intron 3 of 26)	intron (NM_001305185, intron 3 of 26)	1363.0	NM_001305185	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	10.87	5.07	1.85	6.75	5.13	1.61	3.17	3.54	2.5
Merged-chr19-60756501-1	chr19	60756001	60757001	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_178421, exon 1 of 1)	exon (NM_178421, exon 1 of 1)	514.0	NM_178421	332397.0	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos C2HC-type zinc finger 1	protein-coding	3.43	2.76	0.0	2.7	4.67	3.22	5.28	3.1	3.12
Merged-chr7-79595069-1	chr7	79594569	79595569	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019799, intron 9 of 10)	intron (NM_019799, intron 9 of 10)	22588.0	NM_019799	56315.0	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.57	1.38	1.85	2.02	0.93	1.61	1.06	1.77	5.0
Merged-chr14-55085144-1	chr14	55084644	55085644	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	6904.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	9.15	5.07	1.85	7.42	4.2	1.61	5.28	0.88	3.75
Merged-chr18-79294976-1	chr18	79294476	79295476	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-185585.0	NM_053099	240427.0	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.29	3.69	1.85	2.7	4.2	11.25	3.17	2.21	4.37
Merged-chrX-106145088-1	chrX	106144588	106145588	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	L1_Mus1|LINE|L1	1813.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	27.46	36.86	37.92	39.81	30.32	40.99	24.29	29.18	19.36
Merged-chr10-81628404-1	chr10	81627904	81628904	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027480)	promoter-TSS (NM_027480)	-136.0	NM_027480	70615.0	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	31.46	35.48	42.55	23.62	24.26	64.3	32.74	42.89	24.36
Merged-chrX-94152866-1	chrX	94152366	94153366	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEf|LINE|L1	-29099.0	NM_001358356	22764.0	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	14.87	6.45	7.4	14.84	10.73	22.51	4.22	1.33	2.5
Merged-chr8-83609720-1	chr8	83609220	83610220	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001308227, intron 1 of 2)	intron (NM_001308227, intron 1 of 2)	1172.0	NM_001308227	81489.0	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	20.59	13.36	18.5	22.27	13.53	17.68	7.39	8.84	6.25
Merged-chr17-4778373-1	chr17	4777873	4778873	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	143393.0	NR_130984	75117.0	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	2.29	2.76	2.77	5.4	2.33	0.0	0.0	0.44	1.25
Merged-chr3-27937313-1	chr3	27936813	27937813	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1367.0	NM_001164056	18805.0	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	6.86	3.23	0.92	3.37	1.4	3.22	3.17	2.21	1.87
Merged-chr10-83149828-1	chr10	83149328	83150328	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	164331.0	NM_021439	58250.0	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	1.72	1.38	0.0	2.02	1.87	0.0	3.17	1.77	5.0
Merged-chr3-144242262-1	chr3	144241762	144242762	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-37007.0	NM_010723	16911.0	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.57	3.23	1.85	1.35	0.47	1.61	2.11	0.0	1.25
Merged-chr10-67105182-1	chr10	67104682	67105682	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8194.0	NM_178606	28193.0	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	16.59	10.6	14.8	16.19	11.2	16.88	14.79	4.42	19.98
Merged-chr1-173599226-1	chr1	173598726	173599726	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001177349)	promoter-TSS (NM_001177349)	48.0	NM_001177349	623121.0	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	3.43	1.84	1.85	4.05	0.0	1.61	44.36	30.07	19.98
Merged-chr7-7300100-1	chr7	7299600	7300600	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011334)	promoter-TSS (NM_011334)	-543.0	NM_011334	12727.0	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2|clC-4	chloride channel, voltage-sensitive 4	protein-coding	32.04	13.36	12.02	31.04	10.26	13.66	115.12	48.2	15.61
Merged-chr7-44124046-1	chr7	44123546	44124546	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	11373.0	NM_010114	13646.0	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	5.15	7.37	17.57	6.75	6.06	28.13	6.34	2.21	6.25
Merged-chr12-34299696-1	chr12	34299196	34300196	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 16 of 27)	ORR1D2|LTR|ERVL-MaLR	229193.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	2.29	4.61	3.7	6.75	5.6	0.0	2.11	0.88	1.87
Merged-chr6-72146550-1	chr6	72146050	72147050	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 4 of 6)	intron (NM_001035228, intron 4 of 6)	-23353.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	29.17	11.52	30.52	22.27	3.73	24.11	10.56	6.19	18.74
Merged-chr7-108944113-1	chr7	108943613	108944613	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9698.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	2.86	2.3	1.85	2.02	4.67	3.22	3.17	3.54	3.75
Merged-chr13-91509192-1	chr13	91508692	91509692	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360776, intron 1 of 15)	intron (NM_001360776, intron 1 of 15)	48095.0	NM_024186	66970.0	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	55.49	37.78	31.45	22.94	16.33	15.27	4.22	7.07	2.5
Merged-chr2-157099680-1	chr2	157099180	157100180	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018851, intron 15 of 15)	intron (NM_018851, intron 15 of 15)	12625.0	NM_001177439	383766.0	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	5.15	5.99	12.95	8.77	7.46	12.06	12.67	3.1	5.0
Merged-chr19-11095982-1	chr19	11095482	11096482	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027058)	TTS (NM_027058)	-14879.0	NM_022430	64381.0	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	8.58	11.06	13.87	7.42	10.73	8.04	7.39	4.42	9.99
Merged-chr4-95270583-1	chr4	95270083	95271083	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-218361.0	NM_010591	16476.0	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.43	2.3	2.77	2.7	1.87	9.65	1.06	1.77	1.25
Merged-chr7-81371913-1	chr7	81371413	81372413	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357107, intron 1 of 9)	intron (NM_001357107, intron 1 of 9)	562.0	NM_001357107	12877.0	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpe-bp1|Cpeb|mCPEB|mCpeb-1	cytoplasmic polyadenylation element binding protein 1	protein-coding	8.01	2.76	1.85	5.4	7.0	8.04	4.22	4.86	1.25
Merged-chr10-66742006-1	chr10	66741506	66742506	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	178378.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.0	1.84	0.0	4.05	2.8	2.41	5.28	6.63	2.5
Merged-chr10-78493682-1	chr10	78493182	78494182	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28734.0	NM_172134	216134.0	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	4.0	2.76	5.55	0.0	3.27	3.22	3.17	2.65	1.87
Merged-chr11-100478118-1	chr11	100477618	100478618	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_130343)	TTS (NR_130343)	362.0	NR_130343	102465671.0		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	5.72	6.91	11.1	6.75	8.4	9.65	10.56	3.54	14.36
Merged-chr19-55738321-1	chr19	55737821	55738821	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3489.0	NM_001331147	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	11.44	2.3	0.0	8.77	3.73	8.04	3.17	3.98	3.75
Merged-chr1-10268563-1	chr1	10268063	10269063	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35893.0	NM_001102430	211673.0	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	6.29	0.92	3.7	2.02	1.4	3.22	5.28	0.88	0.62
Merged-chr18-67450090-1	chr18	67449590	67450590	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027130)	promoter-TSS (NM_027130)	-954.0	NM_027130	69597.0	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	11.44	11.06	14.8	18.89	2.8	9.65	12.67	19.01	7.49
Merged-chr6-54080476-1	chr6	54079976	54080976	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	40544.0	NM_001163640	69993.0	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	7.44	1.84	5.55	3.37	5.13	1.61	6.34	2.65	7.49
Merged-chr18-73548817-1	chr18	73548317	73549317	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-23888.0	NM_001039214	240396.0	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	1.14	1.84	1.85	2.02	6.06	0.0	0.0	4.86	1.25
Merged-chr4-133197910-1	chr4	133197410	133198410	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153423, exon 9 of 9)	3' UTR (NM_153423, exon 9 of 9)	2255.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	8.01	4.61	5.55	6.07	5.6	26.53	2.11	5.75	9.99
Merged-chr7-120201827-1	chr7	120201327	120202327	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_016669, exon 1 of 8)	exon (NM_016669, exon 1 of 8)	161.0	NM_016669	12971.0	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	6.86	5.07	5.55	5.4	4.67	3.22	2.11	5.31	2.5
Merged-chr14-63102308-1	chr14	63101808	63102808	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-20154.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	68.07	59.44	50.87	65.45	59.71	75.56	84.49	87.11	53.71
Merged-chr7-116161606-1	chr7	116161106	116162106	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305189, intron 8 of 20)	intron (NM_001305189, intron 8 of 20)	27998.0	NM_001305190	233765.0	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	2.86	4.15	2.77	3.37	0.93	1.61	1.06	2.65	1.25
Merged-chr15-25590838-1	chr15	25590338	25591338	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-31712.0	NM_019472	17909.0	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	52.06	64.05	25.9	2.02	0.93	3.22	3.17	1.33	1.25
Merged-chr14-66231726-1	chr14	66231226	66232226	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001162366, intron 1 of 30)	GA-rich|Low_complexity|Low_complexity	-17902.0	NM_001360233	19229.0	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	127.57	83.4	93.42	115.38	59.25	73.14	101.39	99.93	75.57
Merged-chr2-160673657-1	chr2	160673157	160674157	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 3 of 20)	MTD|LTR|ERVL-MaLR	27760.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	12.01	6.91	5.55	4.05	8.86	4.02	7.39	6.63	5.62
Merged-chr11-54879052-1	chr11	54878552	54879552	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	12669.0	NM_008248	15254.0	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	44.05	33.18	24.05	35.76	24.26	26.53	62.31	70.75	36.22
Merged-chr5-65888339-1	chr5	65887839	65888839	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	24770.0	NM_001081105	74734.0	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	30.32	16.13	22.2	20.92	11.2	12.06	11.62	4.86	6.87
Merged-chr10-128792193-1	chr10	128791693	128792693	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021412, intron 2 of 8)	B2_Mm2|SINE|B2	1238.0	NM_021412	58223.0	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	7.44	7.83	7.4	8.1	8.4	13.66	5.28	7.52	6.87
Merged-chr9-57643381-1	chr9	57642881	57643881	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304761, intron 2 of 14)	intron (NM_001304761, intron 2 of 14)	2272.0	NM_007783	12988.0	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	26.89	26.73	60.12	30.36	26.12	53.85	64.43	37.14	39.35
Merged-chr6-129095406-2	chr6	129094894	129095894	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153506, intron 2 of 4)	intron (NM_153506, intron 2 of 4)	5509.0	NM_153506	232409.0	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	7.44	4.61	6.47	4.72	7.93	6.43	3.17	3.98	3.75
Merged-chr8-88649783-1	chr8	88649283	88650283	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145857, intron 1 of 12)	intron (NM_145857, intron 1 of 12)	2436.0	NM_145857	257632.0	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	20.59	32.25	34.22	26.99	24.26	52.25	27.46	19.9	24.98
Merged-chr11-115374312-1	chr11	115373812	115374812	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-6556.0	NM_001346774	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	5.72	2.3	1.85	4.05	1.87	0.0	2.11	1.77	3.75
Merged-chr13-119442304-1	chr13	119441804	119442804	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145457, intron 4 of 10)	MTC|LTR|ERVL-MaLR	13402.0	NM_145457	218693.0	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	9.15	8.75	1.85	8.1	5.13	13.66	11.62	8.4	8.12
Merged-chr1-127979065-1	chr1	127978565	127979565	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	intron (NM_001285945, intron 12 of 20)	110292.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	7.44	8.75	8.32	12.14	6.06	10.45	13.73	6.19	3.75
Merged-chr17-6055074-1	chr17	6054574	6055574	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360148, intron 10 of 15)	RLTR20C1_MM|LTR|ERVK	24665.0	NM_001111017	321007.0	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	4.0	5.53	11.1	8.1	6.53	0.8	11.62	5.31	5.0
Merged-chr4-137739344-1	chr4	137738844	137739844	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J1|LTR|ERVL-MaLR	14883.0	NR_138592	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	1.14	2.3	3.7	4.05	2.8	4.82	3.17	1.77	2.5
Merged-chr4-134188026-1	chr4	134187526	134188526	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_144527)	promoter-TSS (NM_144527)	-941.0	NM_144527	70012.0	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	34.32	21.2	17.57	24.96	29.86	24.92	16.9	19.01	3.75
Merged-chr1-88697515-1	chr1	88697015	88698015	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177305)	TTS (NM_177305)	4676.0	NM_177305	320982.0	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	30.89	19.35	30.52	24.29	10.73	18.49	17.96	8.84	15.61
Merged-chr1-65119629-1	chr1	65119129	65120129	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001285881, intron 2 of 7)	intron (NM_001285881, intron 2 of 7)	3585.0	NM_175293	98303.0	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	4.58	2.76	1.85	2.02	3.73	1.61	3.17	3.1	3.75
Merged-chr7-81204803-2	chr7	81204363	81205363	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-8941.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	8.01	3.23	1.85	18.89	8.86	10.45	13.73	14.15	1.25
Merged-chr6-72132982-1	chr6	72132482	72133482	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-9785.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	12.01	32.25	45.32	14.84	11.2	40.99	31.69	26.09	29.98
Merged-chr11-62013688-1	chr11	62013188	62014188	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	56925.0	NM_001310526	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	7.44	4.61	0.92	9.45	4.2	1.61	3.17	2.65	3.75
Merged-chr5-121970157-1	chr5	121969657	121970657	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007804, intron 2 of 22)	intron (NM_007804, intron 2 of 22)	77668.0	NM_007804	13048.0	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2	cut-like homeobox 2	protein-coding	6.86	2.3	1.85	5.4	2.33	0.8	1.06	0.88	5.0
Merged-chr7-121080153-1	chr7	121079653	121080653	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3285.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	14.3	10.6	10.17	28.34	16.33	32.15	35.91	11.94	23.73
Merged-chr15-96626960-1	chr15	96626460	96627460	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001166458, intron 1 of 15)	intron (NM_001166458, intron 1 of 15)	15002.0	NM_134086	105727.0	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	60.64	68.66	59.2	68.15	44.78	51.44	76.05	77.38	38.1
Merged-chr11-61613800-1	chr11	61613300	61614300	+	565.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-34113.0	NM_001252189	13855.0	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	8.01	3.23	1.85	2.7	5.6	4.82	2.11	0.0	9.99
Merged-chr13-42300799-1	chr13	42300299	42301299	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010104)	promoter-TSS (NM_010104)	-677.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	14.3	3.23	7.4	9.45	2.33	10.45	5.28	4.42	6.25
Merged-chr9-98955248-1	chr9	98954748	98955748	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_012020)	promoter-TSS (NM_012020)	62.0	NR_003248	768252.0	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	-	forkhead box L2, opposite strand	ncRNA	1.72	0.46	1.85	6.07	3.73	4.02	2.11	1.77	1.25
Merged-chr11-98412500-1	chr11	98412000	98413000	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001003817)	promoter-TSS (NM_001003817)	16.0	NM_001003817	13866.0	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	1.72	3.69	11.1	4.72	3.73	8.04	5.28	7.07	3.75
Merged-chr19-55747513-2	chr19	55747033	55748033	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138565, intron 3 of 15)	intron (NR_138565, intron 3 of 15)	5723.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	33.75	29.95	35.15	33.74	19.13	37.78	30.63	25.65	20.61
Merged-chr13-38634521-1	chr13	38634021	38635021	+	565.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139063, intron 1 of 4)	intron (NM_139063, intron 1 of 4)	588.0	NM_139063	17828.0	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	33.75	35.48	30.52	36.43	28.92	53.85	43.3	32.28	23.11
Merged-chr18-36713103-1	chr18	36712603	36713603	+	565.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	13712.0	NM_009841	12475.0	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	37.76	36.86	5.55	45.88	41.05	31.35	13.73	9.73	18.74
Merged-chr5-146768953-2	chr5	146768458	146769458	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011669, exon 2 of 9)	exon (NM_011669, exon 2 of 9)	25998.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	33.75	34.56	27.75	45.88	31.26	37.78	68.65	72.96	49.96
Merged-chr12-75855296-2	chr12	75854798	75855798	+	564.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005510, intron 2 of 115)	intron (NM_001005510, intron 2 of 115)	36980.0	NM_001005510	319565.0	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	13.16	13.36	16.65	8.77	5.13	9.65	17.96	5.31	5.0
Merged-chr14-73241495-1	chr14	73240995	73241995	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009029, intron 17 of 26)	intron (NM_009029, intron 17 of 26)	3604.0	NM_175116	67168.0	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	12.01	22.12	21.27	24.29	10.73	14.47	17.96	18.57	29.35
Merged-chr11-120236597-1	chr11	120236097	120237097	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198423, intron 1 of 27)	CpG	3650.0	NM_198423	268515.0	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	9.72	9.68	27.75	8.77	5.6	12.86	36.97	29.18	15.61
Merged-chr16-45970384-1	chr16	45969884	45970884	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_152226, exon 3 of 3)	non-coding (NR_152226, exon 3 of 3)	24778.0	NR_152227	100503378.0	Mm.387133	NR_152226	ENSMUSG00000085826	Gm15638	Gm41457	predicted gene 15638	ncRNA	10.3	5.07	9.25	5.4	7.46	6.43	4.22	1.33	3.75
Merged-chr17-84145578-2	chr17	84145056	84146056	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	42391.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	43.48	34.56	24.05	36.43	23.79	49.03	16.9	15.92	36.22
Merged-chr5-142877499-2	chr5	142876985	142877985	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033312, intron 4 of 4)	intron (NM_001033312, intron 4 of 4)	17753.0	NM_001033312	231863.0	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	7.44	5.07	1.85	1.35	0.47	1.61	5.28	0.44	2.5
Merged-chr14-21621111-1	chr14	21620611	21621611	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017479, intron 5 of 16)	intron (NM_017479, intron 5 of 16)	93465.0	NM_001013826	435391.0	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	2.86	3.23	0.92	6.07	3.73	8.04	1.06	2.65	2.5
Merged-chr16-16438684-1	chr16	16438184	16439184	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 11 of 16)	MRLTR33|LTR|ERVK	-79653.0	NM_001360009	74006.0	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	8.58	9.68	9.25	7.42	5.13	8.04	8.45	8.4	9.99
Merged-chr1-105978825-1	chr1	105978325	105979325	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151625)	TTS (NR_151625)	11457.0	NR_151625	635504.0	Mm.359717	NR_151625		Gm7160	EG635504	predicted gene 7160	ncRNA	44.05	53.91	51.8	49.93	32.66	43.4	92.94	65.44	39.97
Merged-chr7-19279168-1	chr7	19278668	19279668	+	564.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_177691, exon 1 of 5)	exon (NM_177691, exon 1 of 5)	881.0	NM_177691	232941.0	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	5.15	4.15	0.92	4.72	0.47	1.61	7.39	5.75	1.25
Merged-chr18-34512031-2	chr18	34511542	34512542	+	564.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20A4|LTR|ERVK	-5219.0	NM_146084	225358.0	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	8.58	6.91	8.32	11.47	2.8	16.08	0.0	0.44	3.75
Merged-chr17-83025468-2	chr17	83024980	83025980	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	52745.0	NR_045094	100503434.0	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	4.58	1.84	2.77	2.02	2.33	0.0	2.11	2.65	3.75
Merged-chr2-131982796-2	chr2	131982339	131983339	+	564.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31802.0	NM_001278520	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	3.43	2.3	1.85	1.35	1.87	3.22	1.06	2.65	6.25
Merged-chr17-34251820-3	chr17	34251306	34252306	+	564.444458	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11421.0	NM_207105	14961.0	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	2.29	4.15	5.55	6.07	6.06	4.82	4.22	4.42	7.49
Merged-chr13-54301886-2	chr13	54301387	54302387	+	564.333374	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-69462.0	NM_009946	12890.0	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120|Gm34843	complexin 2	protein-coding	14.3	8.75	12.95	6.75	3.27	4.82	20.07	14.59	18.74
Merged-chr2-118487229-2	chr2	118486739	118487739	+	564.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7543.0	NM_009273	20813.0	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	2.29	0.46	0.92	3.37	1.87	1.61	7.39	5.75	2.5
Merged-chr7-97764745-1	chr7	97764245	97765245	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23796.0	NM_001357365	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	24.03	23.04	35.15	38.46	40.12	28.94	33.8	30.07	25.61
Merged-chr10-42958335-1	chr10	42957835	42958835	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172938, exon 9 of 9)	3' UTR (NM_172938, exon 9 of 9)	32827.0	NR_153349	327749.0	Mm.428887	NR_153349		Gm5079	C230040G06	predicted gene 5079	ncRNA	0.57	0.92	3.7	2.02	2.33	0.0	3.17	1.33	0.0
Merged-chr9-31221226-1	chr9	31220726	31221726	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-9378.0	NM_001102456	11804.0	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2|CDEBP	amyloid beta (A4) precursor-like protein 2	protein-coding	8.01	4.61	0.0	3.37	1.87	2.41	7.39	1.77	1.25
Merged-chr5-143567942-1	chr5	143567442	143568442	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19236.0	NM_026050	67238.0	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	10.3	0.92	1.85	2.02	1.4	6.43	0.0	2.65	3.75
Merged-chr4-58462407-1	chr4	58461907	58462907	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172989, intron 3 of 3)	intron (NM_172989, intron 3 of 3)	-21309.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	8.58	6.91	7.4	8.77	5.13	8.04	17.96	17.24	13.74
Merged-chr2-131950841-1	chr2	131950341	131951341	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001278520)	promoter-TSS (NM_001278520)	-20.0	NM_001278257	26434.0	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion like protein doppel	protein-coding	3.43	1.38	3.7	2.02	3.27	3.22	1.06	0.88	5.0
Merged-chr2-101896018-1	chr2	101895518	101896518	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029635, intron 2 of 5)	LTR16E2|LTR|ERVL	9756.0	NM_029635	76501.0	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	14.87	6.45	18.5	7.42	6.06	4.82	5.28	0.88	6.87
Merged-chr1-177179833-1	chr1	177179333	177180333	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011785, intron 1 of 12)	intron (NM_011785, intron 1 of 12)	68934.0	NM_011785	23797.0	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	24.6	59.44	25.9	18.22	16.33	21.7	31.69	19.46	14.99
Merged-chr15-41818936-1	chr15	41818436	41819436	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152565, intron 8 of 17)	intron (NR_152565, intron 8 of 17)	-12022.0	NM_001130164	170719.0	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	5.15	5.53	0.92	5.4	0.93	2.41	2.11	3.1	3.75
Merged-chr17-47628990-1	chr17	47628490	47629490	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1700.0	NM_198421	224836.0	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	53.77	68.2	46.25	49.93	73.71	40.19	99.28	80.92	34.35
Merged-chrX-85805160-1	chrX	85804660	85805660	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21501.0	NR_152196	100041562.0	Mm.448008	NR_152196		Gm14762	-	predicted gene 14762	ncRNA	1.72	3.23	3.7	5.4	4.2	4.02	5.28	3.98	3.75
Merged-chr1-138160501-1	chr1	138160001	138161001	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001268286, intron 2 of 28)	Lx9|LINE|L1	14625.0	NM_001111316	19264.0	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	96.68	104.6	74.92	70.17	74.17	80.38	67.6	76.49	62.45
Merged-chr11-61193586-1	chr11	61193086	61194086	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15156.0	NM_007436	11670.0	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	2.29	0.92	0.0	3.37	0.93	6.43	3.17	0.44	0.0
Merged-chr4-53028442-1	chr4	53027942	53028942	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16562.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	2.86	2.3	9.25	3.37	10.73	9.65	4.22	0.44	1.25
Merged-chr19-40708824-1	chr19	40708324	40709324	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	49054.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	38.33	41.47	33.3	58.7	27.99	60.28	33.8	44.66	31.85
Merged-chr15-96953493-1	chr15	96952993	96953993	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	66866.0	NM_001358060	69354.0	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	2.29	3.23	1.85	4.05	2.8	5.63	3.17	0.88	3.75
Merged-chr14-31217843-1	chr14	31217343	31218343	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001025379)	promoter-TSS (NM_001025379)	-30.0	NM_001025379	218877.0	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	1.72	0.0	2.77	3.37	0.93	0.0	7.39	4.42	3.75
Merged-chr12-81915762-1	chr12	81915262	81916262	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018814, intron 5 of 35)	intron (NM_018814, intron 5 of 35)	55732.0	NM_018814	54604.0	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	2.29	5.07	0.0	2.02	2.33	3.22	6.34	0.88	5.0
Merged-chr2-68826430-1	chr2	68825930	68826930	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-35011.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	9.15	5.53	12.95	12.82	0.47	15.27	9.51	9.29	10.62
Merged-chr6-116181007-1	chr6	116180507	116181507	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 1 of 5)	RLTR34D_MM|LTR|ERVK	12367.0	NM_177412	330401.0	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	16.59	11.06	20.35	12.82	8.4	17.68	11.62	6.19	6.25
Merged-chr18-67770911-1	chr18	67770411	67771411	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3965.0	NM_001360934	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	13.73	17.05	13.87	6.75	6.53	8.04	25.35	16.8	21.23
Merged-chr6-51466341-1	chr6	51465841	51466841	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_182650, exon 5 of 10)	exon (NM_182650, exon 5 of 10)	3553.0	NR_104468	53379.0	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	12.59	11.06	12.95	12.82	8.4	4.02	10.56	11.5	6.25
Merged-chr11-60422273-1	chr11	60421773	60422773	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025757, intron 1 of 5)	intron (NM_025757, intron 1 of 5)	5128.0	NM_025757	66771.0	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	13.16	5.53	0.0	4.72	3.73	3.22	5.28	3.1	3.75
Merged-chr17-30216887-1	chr17	30216387	30217387	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_027060, exon 11 of 11)	3' UTR (NM_027060, exon 11 of 11)	179293.0	NR_030688	623169.0	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	2.86	1.38	0.0	2.7	1.4	8.04	2.11	2.65	3.75
Merged-chr1-191176091-1	chr1	191175591	191176591	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007498, intron 2 of 3)	intron (NM_007498, intron 2 of 3)	7242.0	NM_007498	11910.0	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	12.59	3.23	3.7	6.75	3.27	1.61	8.45	3.54	6.25
Merged-chr13-54190164-1	chr13	54189664	54190664	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-1965.0	NM_001010973	15466.0	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	H2R|HH2R	histamine receptor H2	protein-coding	1.14	1.38	0.0	0.67	1.4	0.0	5.28	0.44	3.75
Merged-chr7-6357743-1	chr7	6357243	6358243	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	-5565.0	NM_001025163	330463.0	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	6.29	2.3	1.85	6.75	1.87	1.61	1.06	1.33	1.25
Merged-chr17-15829371-1	chr17	15828871	15829871	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_178615	68799.0	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	1.72	4.61	11.1	5.4	3.73	4.82	12.67	4.42	6.87
Merged-chr7-100497098-1	chr7	100496598	100497598	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011671, exon 4 of 8)	exon (NM_011671, exon 4 of 8)	3740.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	54.92	34.1	49.02	60.05	24.26	59.48	44.36	42.45	45.59
Merged-chr7-68127494-1	chr7	68126994	68127994	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	136739.0	NM_030101	78444.0	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	3.43	3.69	7.4	4.05	7.46	1.61	1.06	2.65	1.25
Merged-chr9-27029455-1	chr9	27028955	27029955	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178113)	promoter-TSS (NM_178113)	639.0	NM_178027	69091.0	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	61.21	58.06	56.42	54.65	71.38	61.09	70.76	49.96	39.35
Merged-chr5-122952373-1	chr5	122951873	122952873	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 6 of 22)	CpG	36726.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	13.73	5.99	0.0	6.07	7.0	1.61	12.67	6.63	10.62
Merged-chr3-89396508-1	chr3	89396008	89397008	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040404, intron 1 of 1)	intron (NR_040404, intron 1 of 1)	2218.0	NR_040404	545539.0	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	-	predicted gene 15417	ncRNA	6.86	8.29	8.32	12.14	7.93	6.43	8.45	1.33	3.75
Merged-chr9-41059264-1	chr9	41058764	41059764	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176860, intron 1 of 13)	intron (NM_176860, intron 1 of 13)	20242.0	NM_001357412	72828.0	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|STS-1|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	9.15	8.75	3.7	6.75	5.13	6.43	17.96	17.24	19.98
Merged-chr17-7396225-1	chr17	7395725	7396725	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10920.0	NM_001142539	667055.0	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	-	predicted gene 9992	protein-coding	3.43	0.92	0.0	3.37	0.93	0.0	12.67	3.98	0.0
Merged-chr10-62542616-1	chr10	62542116	62543116	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15171.0	NM_001358965	19073.0	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	26.89	24.42	14.8	24.29	12.6	28.13	22.18	9.73	19.36
Merged-chr16-30512589-1	chr16	30512089	30513089	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	37989.0	NM_172614	224090.0	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	17.16	11.06	11.1	26.31	12.6	13.66	6.34	7.96	13.74
Merged-chr3-117311172-1	chr3	117310672	117311672	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	49704.0	NM_177664	229791.0	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	2.29	1.38	5.55	4.72	4.2	4.02	5.28	8.84	2.5
Merged-chr12-70148195-1	chr12	70147695	70148695	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5976.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	19.45	23.04	7.4	21.59	27.06	6.43	31.69	29.63	8.12
Merged-chr4-3518051-1	chr4	3517551	3518551	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19039.0	NR_037306	100499523.0		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	13.16	15.21	5.55	29.69	27.06	39.39	46.47	27.86	24.36
Merged-chr2-166270185-1	chr2	166269685	166270685	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28B|LTR|ERVL	-3723.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	2.86	4.15	7.4	4.05	3.27	7.23	1.06	0.88	5.0
Merged-chr6-54659139-1	chr6	54658639	54659639	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1Md_F2|LINE|L1	-22485.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	16.02	12.44	17.57	6.07	7.0	17.68	8.45	5.75	5.0
Merged-chr2-34898048-1	chr2	34897548	34898548	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028716, intron 13 of 14)	intron (NM_028716, intron 13 of 14)	15928.0	NM_028716	74016.0	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	6.29	2.76	3.7	2.7	3.27	0.0	2.11	3.1	1.25
Merged-chr19-17165135-1	chr19	17164635	17165635	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	174370.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	35.47	37.32	37.0	32.39	26.12	26.53	27.46	23.43	25.61
Merged-chr2-25266475-1	chr2	25265975	25266975	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175286, intron 1 of 3)	intron (NM_175286, intron 1 of 3)	3877.0	NM_175286	97031.0	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	6.29	9.22	5.55	6.07	4.2	0.0	8.45	3.1	4.37
Merged-chr1-84444852-1	chr1	84444352	84445352	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-160207.0	NM_001003948	98496.0	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	8.01	4.61	3.7	11.47	5.13	13.66	7.39	3.1	8.74
Merged-chr13-6690224-1	chr13	6689724	6690724	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1A|Other|Other	-41453.0	NM_001291071	56421.0	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	6.86	0.0	0.0	2.02	0.0	4.02	1.06	0.88	3.12
Merged-chr2-165367180-1	chr2	165366680	165367680	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5061.0	NM_001005425	381405.0	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.57	3.23	3.7	0.0	1.87	1.61	4.22	0.88	2.5
Merged-chrX-37074723-1	chrX	37074223	37075223	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8310.0	NR_002900	104369.0	Mm.453531	NR_002900	ENSMUSG00000065642	Snora69	MBI-134|Rnu69	small nucleolar RNA, H/ACA box 69	snoRNA	1.14	2.3	0.0	4.05	0.0	3.22	1.06	2.21	0.0
Merged-chr4-133633075-1	chr4	133632575	133633575	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001017968, intron 1 of 7)	CpG	354.0	NM_001017968	503610.0	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	39.47	41.01	60.12	73.54	70.44	96.45	35.91	22.11	36.85
Merged-chr3-14881196-1	chr3	14880696	14881696	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5073.0	NM_001357334	12349.0	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	26.31	15.67	11.1	16.87	4.2	12.86	15.84	6.63	8.74
Merged-chr2-166964983-1	chr2	166964483	166965483	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_111895)	promoter-TSS (NR_111895)	-266.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	18.31	16.59	22.2	19.57	11.2	15.27	19.01	8.84	18.74
Merged-chr6-117277081-1	chr6	117276581	117277581	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	108546.0	NM_021704	20315.0	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	4.0	4.61	0.0	4.72	2.8	4.02	5.28	1.77	1.25
Merged-chr16-64899239-1	chr16	64898739	64899739	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47238.0	NM_178647	106143.0	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	7.44	3.69	0.0	1.35	1.4	0.0	5.28	0.0	1.25
Merged-chr14-34490134-2	chr14	34489629	34490629	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009758, intron 1 of 12)	intron (NM_009758, intron 1 of 12)	12417.0	NM_009758	12166.0	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5	bone morphogenetic protein receptor, type 1A	protein-coding	20.59	23.96	5.55	18.22	34.52	14.47	26.4	25.2	21.23
Merged-chr15-99474262-1	chr15	99473762	99474762	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029236, intron 1 of 1)	intron (NM_029236, intron 1 of 1)	468.0	NM_029236	75284.0	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	94.39	80.64	52.72	74.89	62.05	64.3	98.23	78.26	42.47
Merged-chr7-110631291-1	chr7	110630791	110631791	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3634.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	7.44	3.23	4.62	13.49	5.13	6.43	3.17	1.33	4.37
Merged-chr14-34615307-1	chr14	34614807	34615807	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15165.0	NM_013887	30044.0	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	2.29	0.0	5.55	0.0	5.13	3.22	2.11	1.77	2.5
Merged-chr17-87306898-1	chr17	87306398	87307398	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028639, intron 3 of 19)	intron (NM_028639, intron 3 of 19)	24012.0	NM_028639	225049.0	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	28.03	37.32	24.97	35.09	42.45	21.7	20.07	26.53	7.49
Merged-chr5-29893994-1	chr5	29893494	29894494	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-119120.0	NM_001314054	16193.0	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	4.0	5.99	5.55	0.0	5.6	4.82	9.51	3.98	3.75
Merged-chr19-61018066-1	chr19	61017566	61018566	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 2 of 15)	MTE2b|LTR|ERVL-MaLR	122774.0	NR_131956	414758.0	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	9.15	10.14	12.95	8.77	7.0	19.29	5.28	7.96	3.75
Merged-chr7-142572108-1	chr7	142571608	142572608	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR17B_Mm|LTR|ERVK	5039.0	NR_030416	735280.0		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	9.72	5.07	2.77	1.35	4.67	0.0	7.39	1.33	5.62
Merged-chr12-69457281-1	chr12	69456781	69457781	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18269.0	NR_038060	76062.0	Mm.380755	NR_038060	ENSMUSG00000113035	5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	9.15	12.9	0.0	15.52	7.93	8.04	6.34	9.73	2.5
Merged-chr6-114840074-1	chr6	114839574	114840574	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	81747.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	20.59	3.69	7.4	10.8	2.8	0.0	5.28	2.65	1.25
Merged-chr7-27167903-1	chr7	27167403	27168403	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029391)	TTS (NM_029391)	-1101.0	NM_053208	112406.0	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	137.29	148.37	123.94	127.52	100.77	108.51	177.44	190.13	111.79
Merged-chr19-45037056-1	chr19	45036556	45037556	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001195265, exon 7 of 16)	exon (NM_001195265, exon 7 of 16)	8716.0	NM_001195265	100503041.0	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.57	1.38	0.92	2.02	1.4	2.41	0.0	0.0	0.62
Merged-chr13-61774088-1	chr13	61773588	61774588	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028430, intron 1 of 3)	intron (NR_028430, intron 1 of 3)	2508.0	NR_028430	432812.0	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	1.14	0.46	0.0	0.0	0.0	0.0	6.34	7.52	7.49
Merged-chr16-16557922-1	chr16	16557422	16558422	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	2297.0	NM_139232	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	18.31	21.2	8.32	18.89	16.79	32.96	12.67	17.69	17.49
Merged-chr2-90490886-1	chr2	90490386	90491386	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	-11712.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	103.54	104.14	66.6	91.76	60.18	85.2	103.51	137.51	63.7
Merged-chr1-186704427-1	chr1	186703927	186704927	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001329107, intron 1 of 7)	CpG	1562.0	NM_009367	21808.0	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	8.58	2.76	0.0	3.37	4.67	4.82	5.28	1.77	14.36
Merged-chr14-31665093-1	chr14	31664593	31665593	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025295, intron 2 of 3)	intron (NM_025295, intron 2 of 3)	24036.0	NM_025295	26363.0	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.15	2.3	0.92	4.05	3.27	4.02	9.51	1.33	1.25
Merged-chr7-97977582-1	chr7	97977082	97978082	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177696, intron 10 of 17)	intron (NM_177696, intron 10 of 17)	57624.0	NM_177696	233537.0	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	1.72	2.76	0.0	6.07	3.27	1.61	2.11	4.86	1.25
Merged-chr10-24931643-1	chr10	24931143	24932143	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4173.0	NM_007482	11846.0	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	12.59	5.07	5.55	0.67	4.2	7.23	3.17	3.98	8.74
Merged-chr3-69193270-1	chr3	69192770	69193770	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29149.0	NM_027843	71619.0	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	16.59	10.14	21.27	6.75	7.46	4.82	12.67	14.59	11.24
Merged-chrX-153359666-1	chrX	153359166	153360166	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001357183)	promoter-TSS (NM_001357183)	53.0	NM_001357183	245671.0	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	2.29	0.46	0.0	0.67	0.93	3.22	2.11	3.54	0.0
Merged-chr5-134613838-1	chr5	134613338	134614338	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020044, intron 1 of 12)	intron (NM_020044, intron 1 of 12)	1187.0	NM_022964	56743.0	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	11.44	5.99	11.1	15.52	7.46	16.88	9.51	7.52	2.5
Merged-chr1-62697121-2	chr1	62696608	62697608	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6209.0	NM_001077406	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	6.86	1.38	4.62	4.05	2.33	0.0	0.0	0.0	3.12
Merged-chr13-45089259-1	chr13	45088759	45089759	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-87163.0	NM_025772	94245.0	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	16.02	20.27	4.62	26.99	25.19	7.23	43.3	35.37	22.48
Merged-chr6-106797594-1	chr6	106797094	106798094	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175357, intron 1 of 10)	MER20|DNA|hAT-Charlie	2493.0	NM_021449	58799.0	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	10.3	10.14	3.7	5.4	6.06	4.82	10.56	12.82	3.75
Merged-chr1-60746356-1	chr1	60745856	60746856	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_007642)	promoter-TSS (NM_007642)	-32.0	NM_007642	12487.0	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	1.72	4.15	1.85	12.82	6.53	4.82	2.11	3.98	1.25
Merged-chr4-150965330-1	chr4	150964830	150965830	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-31767.0	NM_011910	24111.0	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	4.0	4.61	0.0	6.07	5.13	4.82	5.28	5.75	1.87
Merged-chr9-21100592-1	chr9	21100092	21101092	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8584.0	NR_038081	100568458.0	Mm.196137	NR_038081		Gm38431	Raver1-fdx1l	predicted gene, 38431	ncRNA	11.44	4.61	8.32	13.49	10.73	17.68	10.56	11.5	9.37
Merged-chr2-173274898-1	chr2	173274398	173275398	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022995, intron 1 of 3)	intron (NM_022995, intron 1 of 3)	1635.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	2.86	0.92	1.85	2.02	1.87	4.02	3.17	0.88	3.12
Merged-chr8-124617672-1	chr8	124617172	124618172	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023709, intron 19 of 19)	intron (NM_023709, intron 19 of 19)	41561.0	NM_023709	73647.0	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	5.15	2.76	0.0	8.77	3.73	8.04	5.28	5.31	5.0
Merged-chr8-3309690-1	chr8	3309190	3310190	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44B|LTR|ERVK	-30073.0	NM_001330056	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	20.59	25.8	24.05	22.94	21.46	19.29	17.96	13.71	19.98
Merged-chr2-160357356-1	chr2	160356856	160357856	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	9709.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	4.0	2.76	11.1	2.7	3.73	9.65	6.34	3.98	9.37
Merged-chr2-177398317-1	chr2	177397817	177398817	+	564.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-66425.0	NM_001177568	628308.0	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420	zinc finger protein 970	protein-coding	3.43	2.3	0.0	6.75	1.87	0.0	2.11	6.19	2.5
Merged-chr15-27706817-1	chr15	27706317	27707317	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25275.0	NM_001242423	223433.0	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	4.58	3.69	5.55	9.45	6.06	9.65	4.22	0.0	3.12
Merged-chr17-25860677-1	chr17	25860177	25861177	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001163766, exon 3 of 41)	exon (NM_001163766, exon 3 of 41)	838.0	NM_001163766	106618.0	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	36.04	26.73	12.02	38.46	23.79	12.86	24.29	19.46	5.62
Merged-chr19-21280021-1	chr19	21279521	21280521	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009551, intron 5 of 5)	intron (NM_009551, intron 5 of 5)	7743.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	6.29	5.53	3.7	9.45	1.87	6.43	0.0	4.42	6.25
Merged-chr11-115291128-1	chr11	115290628	115291628	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178035, intron 2 of 5)	intron (NM_178035, intron 2 of 5)	6418.0	NM_178035	328035.0	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804	fatty acid desaturase domain family, member 6	protein-coding	10.87	5.07	1.85	7.42	13.53	10.45	10.56	8.4	3.75
Merged-chr12-95692186-1	chr12	95691686	95692686	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201518)	promoter-TSS (NM_201518)	-40.0	NM_201518	399558.0	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	1.14	2.76	1.85	0.67	2.8	1.61	1.06	1.77	1.25
Merged-chr4-155891307-1	chr4	155890807	155891807	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_207223)	promoter-TSS (NM_207223)	455.0	NM_001033490	433813.0	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	22.31	13.82	33.3	20.92	23.79	28.94	16.9	15.03	9.37
Merged-chr9-37590505-1	chr9	37590005	37591005	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23215.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	8.58	4.15	1.85	4.05	1.4	3.22	4.22	3.98	2.5
Merged-chrX-56565338-1	chrX	56564838	56565838	+	564.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-15732.0	NM_001033372	270599.0	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	1.14	2.76	0.0	2.02	1.87	0.8	1.06	2.65	0.0
Merged-chr7-19268577-1	chr7	19268077	19269077	+	564.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009499, intron 1 of 12)	intron (NM_009499, intron 1 of 12)	3277.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	50.91	56.68	101.74	37.78	30.32	49.03	57.03	50.41	45.59
Merged-chr14-55177489-2	chr14	55176973	55177973	+	563.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-44534.0	NM_027790	71412.0	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0.0	0.46	1.85	4.05	0.47	0.0	2.11	1.33	1.25
Merged-chr1-55736584-2	chr1	55736070	55737070	+	563.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001114663, intron 5 of 5)	intron (NM_001114663, intron 5 of 5)	-194671.0	NR_045837	329159.0	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	2.86	2.3	9.25	2.02	2.33	1.61	2.11	0.0	2.5
Merged-chr2-73458021-2	chr2	73457524	73458524	+	563.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	MLT1K|LTR|ERVL-MaLR	-4135.0	NM_001289722	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	24.03	22.58	9.25	20.92	15.39	21.7	32.74	23.43	24.36
Merged-chr16-31528799-1	chr16	31528299	31529299	+	563.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-89334.0	NM_001357871	224098.0	Mm.125439	NM_001357870		Gm536	Gm1777	predicted gene 536	protein-coding	0.57	1.38	3.7	0.0	3.27	3.22	4.22	0.0	1.87
Merged-chr2-181523000-1	chr2	181522500	181523500	+	563.666687	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001271584, intron 2 of 5)	B2_Mm2|SINE|B2	2515.0	NM_001271584	13002.0	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	20.02	14.28	7.4	13.49	14.93	14.47	16.9	19.46	19.98
Merged-chrX-71086144-1	chrX	71085644	71086644	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081354, intron 1 of 6)	Lx8|LINE|L1	35888.0	NM_001081354	333639.0	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	23.45	22.58	17.57	27.66	10.26	16.88	20.07	13.71	25.61
Merged-chr11-114988292-1	chr11	114987792	114988792	+	563.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145437, intron 1 of 3)	B2_Mm2|SINE|B2	1594.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	6.86	3.23	4.62	87.71	58.31	86.01	122.52	114.08	69.95
Merged-chr3-85518617-1	chr3	85518117	85519117	+	563.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	51240.0	NR_130326	100316670.0		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	10.87	8.29	25.9	4.72	6.53	1.61	1.06	3.98	4.37
Merged-chr7-35092662-1	chr7	35092162	35093162	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-26631.0	NM_001287521	12606.0	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	7.44	7.37	4.62	5.4	7.0	4.02	6.34	3.1	6.87
Merged-chr19-55800810-1	chr19	55800310	55801310	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	59000.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	12.59	11.06	19.42	7.42	10.73	20.9	9.51	7.07	8.74
Merged-chr7-30593399-1	chr7	30592899	30593899	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_021397)	promoter-TSS (NM_021397)	-457.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	13.16	4.61	3.7	7.42	4.2	6.43	4.22	7.07	5.0
Merged-chr2-50741529-1	chr2	50741029	50742029	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	-168155.0	NR_033595	227885.0	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.29	0.46	0.0	1.35	3.27	1.61	3.17	3.54	5.62
Merged-chr14-67760701-1	chr14	67760201	67761201	+	563.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177780, intron 48 of 51)	intron (NM_177780, intron 48 of 51)	15520.0	NR_133010	14714.0	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	4.58	10.14	7.4	3.37	4.67	12.86	16.9	15.03	11.24
Merged-chr5-105345242-1	chr5	105344742	105345742	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132129, intron 1 of 10)	intron (NR_132129, intron 1 of 10)	1230.0	NM_001039647	634650.0	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	4.58	11.52	11.1	4.72	5.6	9.65	5.28	3.1	6.25
Merged-chr13-120321029-1	chr13	120320529	120321529	+	563.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	4167.0	NM_153523	236219.0	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	2.86	0.46	6.47	4.05	0.0	1.61	2.11	1.33	1.25
Merged-chr1-85933397-2	chr1	85932888	85933888	+	563.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTR48B|LTR|ERV1	4905.0	NR_037692	71141.0	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	4.0	2.3	2.77	5.4	1.87	0.0	4.22	3.1	4.37
Merged-chr4-149339948-1	chr4	149339448	149340448	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022022, intron 22 of 26)	intron (NM_022022, intron 22 of 26)	5309.0	NR_131918	74310.0	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	5.15	1.84	0.0	8.1	3.27	8.84	4.22	3.98	3.75
Merged-chr9-111054574-1	chr9	111054074	111055074	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001302376)	TTS (NM_001302376)	2670.0	NM_001302377	54199.0	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.01	4.15	8.32	8.77	1.87	6.43	5.28	0.88	2.5
Merged-chr10-19128020-1	chr10	19127520	19128520	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13729.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	4.0	2.76	1.85	2.02	5.13	0.0	4.22	3.1	11.24
Merged-chr18-56737526-1	chr18	56737026	56738026	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 5 of 10)	intron (NM_010721, intron 5 of 10)	29713.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	1.72	3.23	3.7	4.72	2.33	1.61	4.22	1.33	2.5
Merged-chr12-111455309-1	chr12	111454809	111455809	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009396)	TTS (NM_009396)	12648.0	NM_009396	21928.0	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	20.02	15.67	27.75	26.31	17.26	29.74	30.63	21.22	18.11
Merged-chr10-117839582-1	chr10	117839082	117840082	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024457, intron 1 of 7)	Charlie1a|DNA|hAT-Charlie	6392.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	89.81	86.63	71.22	84.34	53.18	73.14	95.06	109.66	41.84
Merged-chr15-58567626-1	chr15	58567126	58568126	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	152158.0	NM_145959	210998.0	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	16.02	5.53	11.1	12.14	2.33	2.41	13.73	3.54	6.25
Merged-chr4-41738137-2	chr4	41737640	41738640	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001286551)	TTS (NM_001286551)	3219.0	NM_001286540	18391.0	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	13.16	11.06	6.47	8.1	13.06	19.29	22.18	9.73	15.61
Merged-chr15-99669082-1	chr15	99668582	99669582	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1295.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	2.86	1.38	3.7	2.7	1.4	1.61	1.06	0.44	1.25
Merged-chr4-53092690-1	chr4	53092190	53093190	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 9 of 49)	intron (NM_013454, intron 9 of 49)	67205.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	6.86	5.53	0.0	5.4	4.67	8.04	2.11	3.1	7.49
Merged-chr3-81783071-1	chr3	81782571	81783571	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR41B|LTR|ERVL	-18954.0	NR_138586	320566.0	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	2.29	1.38	1.85	2.02	2.8	0.0	2.11	3.54	2.5
Merged-chr18-61092652-1	chr18	61092152	61093152	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A2|LTR|ERVK	-12920.0	NM_001037859	12978.0	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	21.17	17.05	15.72	14.84	23.33	23.31	25.35	25.2	11.24
Merged-chr14-31001085-1	chr14	31000585	31001585	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029626)	promoter-TSS (NM_029626)	-308.0	NM_001165930	76485.0	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	88.67	82.94	59.2	87.71	83.04	79.58	64.43	87.55	34.97
Merged-chr4-149785476-1	chr4	149784976	149785976	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11209.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	5.15	2.76	11.1	6.75	7.46	5.63	10.56	8.4	5.0
Merged-chr15-54954098-1	chr15	54953598	54954598	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_155354, exon 2 of 3)	non-coding (NR_155354, exon 2 of 3)	1150.0	NR_155354	102638507.0	Mm.364574	NR_155354		Gm26684	-	predicted gene, 26684	ncRNA	7.44	2.3	6.47	0.67	0.47	1.61	2.11	2.21	0.0
Merged-chr5-120586841-1	chr5	120586341	120587341	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145853, intron 1 of 27)	intron (NM_145853, intron 1 of 27)	1772.0	NM_145853	252972.0	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	5.72	8.29	17.57	4.05	6.06	3.22	6.34	5.31	9.37
Merged-chr4-3715692-1	chr4	3715192	3716192	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_028126, exon 1 of 1)	non-coding (NR_028126, exon 1 of 1)	728.0	NR_028126	70720.0	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	34.9	51.15	33.3	28.34	29.39	46.62	65.48	60.58	31.23
Merged-chr8-88691608-1	chr8	88691108	88692108	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5420.0	NM_001128170	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	5.15	2.3	3.7	5.4	7.46	3.22	5.28	2.21	5.0
Merged-chr13-5425487-1	chr13	5424987	5425987	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	432605.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.0	7.83	9.25	14.84	6.06	22.51	5.28	3.54	8.12
Merged-chr15-12206057-1	chr15	12205557	12206557	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356498, intron 1 of 15)	intron (NM_001356498, intron 1 of 15)	1029.0	NM_172958	268783.0	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	46.91	32.72	4.62	33.06	24.72	16.08	34.85	20.78	18.11
Merged-chr4-106300934-1	chr4	106300434	106301434	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-15279.0	NM_183225	329908.0	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	24.6	16.13	9.25	18.22	18.66	25.72	8.45	4.42	6.25
Merged-chr2-156311551-1	chr2	156311051	156312051	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001316755)	promoter-TSS (NM_001316755)	-922.0	NM_027585	70873.0	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	155.03	180.17	168.34	74.22	50.38	68.32	224.97	204.28	115.54
Merged-chr12-13250951-1	chr12	13250451	13251451	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	-1777.0	NM_134040	104721.0	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	3.43	1.84	5.55	2.02	2.8	0.8	6.34	1.77	2.5
Merged-chr9-111429192-1	chr9	111428692	111429692	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9889.0	NM_172928	245038.0	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	2.86	7.37	7.4	8.1	6.06	11.25	3.17	2.65	7.49
Merged-chr19-32775017-1	chr19	32774517	32775517	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008960, intron 1 of 8)	B3A|SINE|B2	17440.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	18.31	25.34	18.5	9.45	19.59	13.66	23.24	15.48	22.48
Merged-chr6-86523247-1	chr6	86522747	86523747	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2942.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	14.3	22.12	14.8	16.87	14.46	19.29	11.62	11.05	18.74
Merged-chr7-96519402-1	chr7	96518902	96519902	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310762, intron 4 of 32)	intron (NM_001310762, intron 4 of 32)	-177438.0	NR_046043	670727.0	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	-	predicted gene 15412	ncRNA	7.44	5.99	0.0	1.35	3.73	1.61	1.06	1.77	1.25
Merged-chr10-18070868-1	chr10	18070368	18071368	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009048, intron 1 of 19)	intron (NM_009048, intron 1 of 19)	14928.0	NM_001111065	19707.0	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	14.87	5.07	13.87	9.45	11.2	3.22	3.17	5.75	11.24
Merged-chr2-33962237-1	chr2	33961737	33962737	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1M2|LINE|L1	-74291.0	NM_175184	72543.0	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	4.0	1.38	0.92	10.12	9.33	9.65	52.81	41.56	22.48
Merged-chr11-5543436-2	chr11	5542941	5543941	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER90a|LTR|ERV1	-1224.0	NM_134033	104479.0	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	14.87	15.21	22.2	12.14	7.0	7.23	27.46	15.48	17.49
Merged-chr13-117152913-1	chr13	117152413	117153413	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	22888.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	10.87	8.75	12.95	4.05	3.73	1.61	5.28	7.07	5.0
Merged-chr11-85183125-1	chr11	85182625	85183625	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12029.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	1.72	2.76	12.02	4.72	6.06	4.02	3.17	1.77	3.75
Merged-chr13-110928383-1	chr13	110927883	110928883	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24537.0	NR_131194	102636142.0	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	10.87	2.3	1.85	1.35	6.06	4.82	2.11	4.42	2.5
Merged-chr17-23977291-1	chr17	23976791	23977791	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR20B2|LTR|ERVK	-2061.0	NM_013921	30943.0	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	12.01	3.23	1.85	13.49	7.46	4.02	15.84	13.27	14.99
Merged-chr14-61766921-1	chr14	61766421	61767421	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-84548.0	NR_028264	668253.0	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	4.58	2.3	1.85	5.4	3.73	6.43	6.34	3.98	1.25
Merged-chr8-34485133-1	chr8	34484633	34485633	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	155183.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	4.58	1.84	1.85	0.0	0.0	0.0	1.06	0.88	3.75
Merged-chr2-78988379-1	chr2	78987879	78988879	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	118701.0	NR_151457	22193.0	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	4.0	1.38	0.0	5.4	4.67	4.82	3.17	5.75	1.25
Merged-chr1-34839895-1	chr1	34839395	34840395	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160236, intron 1 of 6)	intron (NM_001160236, intron 1 of 6)	3155.0	NM_174997	214469.0	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	Mani|mKIAA4042	family with sequence similarity 168, member B	protein-coding	88.1	99.99	60.12	129.55	101.7	91.63	132.02	117.62	53.71
Merged-chr7-141428575-1	chr7	141428075	141429075	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021316, intron 1 of 1)	intron (NM_021316, intron 1 of 1)	987.0	NM_001360485	57754.0	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	5.72	4.15	22.2	4.72	3.73	20.9	11.62	5.75	8.12
Merged-chr11-69037007-1	chr11	69036507	69037507	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_001013256)	TTS (NM_001013256)	-8630.0	NM_011496	20877.0	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	29.75	38.71	33.3	21.59	14.46	28.94	31.69	38.47	20.61
Merged-chr6-86781997-1	chr6	86781497	86782497	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013471, intron 1 of 12)	intron (NM_013471, intron 1 of 12)	-6883.0	NM_001331120	11746.0	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	20.59	13.82	37.92	12.82	10.26	19.29	13.73	3.1	8.12
Merged-chr2-77266036-1	chr2	77265536	77266536	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	14556.0	NM_175465	228071.0	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	2.86	7.37	8.32	6.07	4.67	4.82	3.17	1.33	14.99
Merged-chr6-114922576-1	chr6	114922076	114923076	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177683)	promoter-TSS (NM_177683)	-755.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	19.45	16.59	24.05	12.82	14.93	24.92	28.52	15.03	24.36
Merged-chr19-24871422-1	chr19	24870922	24871922	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9580.0	NM_175013	226041.0	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	2.86	0.92	3.7	1.35	1.4	2.41	0.0	3.98	3.75
Merged-chr13-92986957-2	chr13	92986469	92987469	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-86335.0	NR_036451	100502942.0	Mm.441946	NM_177623	ENSMUSG00000114382	Gm4814	C920025J10|EG218444	predicted gene 4814	ncRNA	5.15	4.15	5.55	4.05	3.73	0.0	13.73	19.9	12.49
Merged-chr6-121224621-1	chr6	121224121	121225121	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_017379, intron 4 of 4)	intron (NM_017379, intron 4 of 4)	13887.0	NM_017379	53857.0	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	30.89	27.19	12.95	22.94	17.73	17.68	38.02	26.09	22.48
Merged-chr7-115040642-1	chr7	115040142	115041142	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	89368.0	NR_040319	101786.0	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	18.88	23.96	13.87	20.92	22.39	32.96	25.35	25.2	16.24
Merged-chr15-80037920-1	chr15	80037420	80038420	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-23112.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	39.47	37.32	50.87	47.23	43.85	72.34	48.58	53.94	29.98
Merged-chr3-96440859-1	chr3	96440359	96441359	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001256180, exon 3 of 5)	exon (NM_001256180, exon 3 of 5)	11447.0	NM_001256180	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	2.86	1.84	5.55	4.05	0.93	1.61	2.11	0.88	0.0
Merged-chr12-87330470-1	chr12	87329970	87330970	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-30765.0	NM_001290302	217738.0	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	13.73	21.66	16.65	16.87	14.46	20.09	17.96	17.24	17.49
Merged-chr5-32852218-1	chr5	32851718	32852718	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194340, intron 1 of 10)	intron (NM_194340, intron 1 of 10)	2012.0	NM_194340	215476.0	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	16.02	26.73	32.37	16.19	12.13	24.92	16.9	12.82	19.98
Merged-chr12-100776663-1	chr12	100776163	100777163	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2394.0	NM_001361023	217830.0	Mm.218590	NM_145448	ENSMUSG00000021185	Dglucy	9030617O03Rik	D-glutamate cyclase	protein-coding	42.9	43.31	37.92	41.83	32.66	78.77	23.24	38.91	24.98
Merged-chr9-99139143-1	chr9	99138643	99139643	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029094, intron 1 of 23)	intron (NM_029094, intron 1 of 23)	1068.0	NM_029094	74769.0	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta	protein-coding	33.18	48.38	39.77	37.78	32.66	32.96	54.92	55.27	24.36
Merged-chr7-129398982-1	chr7	129398482	129399482	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	141888.0	NM_001080963	381925.0	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	8.01	7.37	3.7	10.8	4.2	12.06	11.62	6.63	8.12
Merged-chr10-121458579-1	chr10	121458079	121459079	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_138956, intron 1 of 4)	B4|SINE|B4	17671.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	94.39	110.13	110.07	114.7	86.77	79.58	87.66	84.9	54.33
Merged-chr5-23661394-1	chr5	23660894	23661894	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359174, intron 2 of 16)	intron (NM_001359174, intron 2 of 16)	14573.0	NM_001359174	20817.0	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	1.72	2.3	1.85	4.05	2.8	0.0	3.17	1.77	2.5
Merged-chr8-15027060-1	chr8	15026560	15027560	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_029116, exon 2 of 2)	5' UTR (NM_029116, exon 2 of 2)	16035.0	NM_029116	74901.0	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	4.58	0.92	0.92	2.02	3.73	1.61	2.11	3.98	3.75
Merged-chr1-186573599-1	chr1	186573099	186574099	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-14918.0	NR_131158	320449.0	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	4.0	4.15	1.85	6.07	2.33	3.22	7.39	9.73	3.75
Merged-chr7-68302796-1	chr7	68302296	68303296	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013811, intron 2 of 8)	intron (NM_001013811, intron 2 of 8)	-26202.0	NR_040340	100504026.0	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	-	predicted gene 16157	ncRNA	1.72	1.84	5.55	2.02	1.87	0.8	4.22	0.0	3.75
Merged-chr13-112387523-1	chr13	112387023	112388023	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-76547.0	NM_010560	16195.0	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.72	9.22	3.7	5.4	1.4	3.22	8.45	12.38	4.37
Merged-chr8-125759238-1	chr8	125758738	125759738	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175561, exon 32 of 34)	exon (NM_175561, exon 32 of 34)	25035.0	NM_001310688	66566.0	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	3.43	2.76	3.7	5.4	0.93	1.61	2.11	0.44	0.62
Merged-chr4-139293849-1	chr4	139293349	139294349	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_151463)	TTS (NR_151463)	16859.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	2.86	7.37	1.85	7.42	3.73	22.51	9.51	0.44	5.0
Merged-chr16-24913198-1	chr16	24912698	24913698	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-146441.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	9.15	3.69	4.62	11.47	8.4	4.82	4.22	7.52	3.12
Merged-chr19-17126092-1	chr19	17125592	17126592	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	169974.0	NM_181348	353211.0	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	49.2	59.9	49.02	46.56	54.11	60.28	34.85	44.22	38.72
Merged-chr13-93188362-1	chr13	93187862	93188862	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154997, intron 1 of 15)	L1_Rod|LINE|L1	4055.0	NM_001361536	100715.0	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	74.37	60.36	70.3	59.38	46.65	57.87	91.89	110.98	61.83
Merged-chr14-120216757-1	chr14	120216257	120217257	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-58912.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	3.43	3.23	3.7	2.02	2.8	8.04	3.17	2.65	3.12
Merged-chr17-6270616-1	chr17	6270116	6271116	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033178, intron 1 of 16)	CpG	146.0	NM_001033178	77106.0	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.0	0.46	0.0	0.0	0.47	0.0	123.57	102.14	35.6
Merged-chr4-150595249-1	chr4	150594749	150595749	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085492, intron 12 of 22)	intron (NM_001085492, intron 12 of 22)	56925.0	NM_001355737	242773.0	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	34.32	30.87	27.75	23.62	20.99	31.35	42.25	44.22	26.85
Merged-chr4-132939618-1	chr4	132939118	132940118	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17067.0	NM_001163792	230789.0	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.0	2.76	3.7	4.72	1.87	1.61	4.22	1.77	1.25
Merged-chr6-51543966-1	chr6	51543466	51544466	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127348)	promoter-TSS (NM_001127348)	-557.0	NM_028035	71982.0	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	67.5	67.74	44.4	56.68	53.18	81.18	59.15	60.13	41.22
Merged-chrX-36096206-1	chrX	36095706	36096706	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-15902.0	NM_133990	16164.0	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	2.86	6.45	0.0	5.4	1.87	0.0	8.45	2.65	1.87
Merged-chr6-42860482-2	chr6	42859978	42860978	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	22595.0	NM_147064	259067.0	Mm.451673	NM_147064	ENSMUSG00000049168	Olfr449	GA_x6K02T2P3E9-4722003-4721068|MOR103-1	olfactory receptor 449	protein-coding	1.72	1.38	0.0	2.02	2.8	0.0	0.0	1.33	2.5
Merged-chr14-62963823-1	chr14	62963323	62964323	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20687.0	NM_001037751	432867.0	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	5.15	5.07	1.85	3.37	2.33	4.82	6.34	3.1	9.37
Merged-chr3-153959610-1	chr3	153959110	153960110	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13826.0	NM_001081263	242259.0	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	4.58	0.46	1.85	2.7	5.6	0.0	2.11	3.98	1.87
Merged-chr12-77100033-1	chr12	77099533	77100533	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-137785.0	NM_001146176	17187.0	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	3.43	5.53	0.0	4.72	6.53	4.82	5.28	0.88	0.0
Merged-chr2-29101062-1	chr2	29100562	29101562	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLTR25A|LTR|ERVK	-23930.0	NM_198033	269254.0	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	34.9	30.87	15.72	26.99	36.39	35.37	24.29	30.51	24.98
Merged-chr12-4592174-1	chr12	4591674	4592674	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001198968)	promoter-TSS (NM_001198968)	-834.0	NM_001198969	20403.0	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	10.87	10.6	3.7	24.29	7.46	9.65	14.79	14.59	13.12
Merged-chr4-141659429-1	chr4	141658929	141659929	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347237, intron 1 of 18)	intron (NM_001347237, intron 1 of 18)	4686.0	NM_001347237	69582.0	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	52.63	31.79	40.7	43.86	48.52	45.01	59.15	39.35	21.86
Merged-chr4-134838447-1	chr4	134837947	134838947	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355499, intron 1 of 11)	intron (NM_001355499, intron 1 of 11)	14898.0	NM_001355501	66146.0	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61|Maco1	transmembrane protein 57	protein-coding	12.01	5.07	0.0	11.47	7.0	10.45	2.11	10.61	2.5
Merged-chr10-26862388-1	chr10	26861888	26862888	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176837, intron 5 of 14)	L1MC5|LINE|L1	89876.0	NM_176837	73910.0	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	9.72	5.53	7.4	6.07	3.27	1.61	5.28	4.42	2.5
Merged-chr19-44297651-1	chr19	44297151	44298151	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009128, intron 2 of 5)	intron (NM_009128, intron 2 of 5)	3975.0	NM_009128	20250.0	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	4.0	5.07	4.62	8.77	5.13	6.43	9.51	7.07	3.75
Merged-chr6-31124962-1	chr6	31124462	31125462	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	RSINE1|SINE|B4	-61869.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	146.45	138.7	85.1	164.63	124.09	128.61	190.11	173.33	98.05
Merged-chr5-124898902-1	chr5	124898402	124899402	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME2z|LINE|L1	36197.0	NM_001081750	269704.0	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.15	2.3	5.55	1.35	2.33	1.61	2.11	0.44	1.25
Merged-chr13-101679558-1	chr13	101679058	101680058	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	13072.0	NM_001024955	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	5.72	4.61	18.5	3.37	6.53	7.23	9.51	4.86	6.25
Merged-chr8-105346630-1	chr8	105346130	105347130	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177699, intron 1 of 21)	intron (NM_177699, intron 1 of 21)	1340.0	NM_177699	234686.0	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	91.53	104.14	98.97	78.94	75.57	100.47	181.66	116.29	73.07
Merged-chr10-118600268-1	chr10	118599768	118600768	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-43743.0	NR_104123	103214.0	Mm.30529	NR_104123	ENSMUSG00000112230	Ifngas1	AI447422|Tmevpg1	Ifng antisense RNA 1	ncRNA	98.39	93.08	78.62	82.32	115.23	81.99	107.73	110.54	46.84
Merged-chr6-81976134-1	chr6	81975634	81976634	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10185.0	NM_026490	56284.0	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	6.29	4.15	11.1	5.4	1.4	0.0	0.0	0.88	1.25
Merged-chr13-117127982-1	chr13	117127482	117128482	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2043.0	NR_046023	623312.0	Mm.131279	NR_046023	ENSMUSG00000114792	Gm6416	-	predicted gene 6416	ncRNA	17.73	14.28	4.62	0.67	6.06	6.43	13.73	9.29	5.62
Merged-chr13-89383217-1	chr13	89382717	89383717	+	563.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-157419.0	NM_013500	12950.0	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	84.09	77.41	42.55	35.76	33.59	8.84	110.9	117.62	53.08
Merged-chr6-88927701-1	chr6	88927201	88928201	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	25450.0	NM_011906	24100.0	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	4.58	1.84	1.85	4.72	1.4	0.0	2.11	0.88	9.99
Merged-chr18-63681354-1	chr18	63680854	63681854	+	563.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016792, intron 2 of 7)	intron (NM_016792, intron 2 of 7)	11005.0	NM_016792	53382.0	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	9.15	10.6	13.87	4.72	8.4	8.04	9.51	16.36	6.25
Merged-chr12-78906923-1	chr12	78906423	78907423	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013738)	promoter-TSS (NM_013738)	15.0	NM_013738	27260.0	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	4.58	2.3	0.0	2.7	0.0	1.61	5.28	0.88	3.12
Merged-chr6-26428519-1	chr6	26428019	26429019	+	563.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	497093.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	5.15	7.83	4.62	6.07	7.93	7.23	2.11	8.84	5.0
Merged-chr18-75174538-2	chr18	75174040	75175040	+	562.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	122777.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	21.17	6.45	11.1	11.47	7.93	9.65	3.17	3.1	5.0
Merged-chr17-46525858-2	chr17	46525387	46526387	+	562.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_001081335, exon 14 of 41)	exon (NM_001081335, exon 14 of 41)	20501.0	NM_001081335	78309.0	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	4.58	1.84	3.7	7.42	1.87	8.04	1.06	1.33	1.25
Merged-chr16-22351411-1	chr16	22350911	22351911	+	562.75	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC3|LINE|L1	56423.0	NR_153764	100043507.0		NR_153764		Gng5-ps	Gm15776	G protein subunit gamma 5, pseudogene	pseudo	5.72	9.22	11.1	15.52	10.26	12.06	22.18	15.48	9.37
Merged-chr7-34655720-1	chr7	34655220	34656220	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001360818)	promoter-TSS (NM_001360818)	-211.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	6.29	1.38	3.7	3.37	0.93	6.43	3.17	0.44	2.5
Merged-chr15-86236428-1	chr15	86235928	86236928	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145476, intron 3 of 12)	intron (NM_145476, intron 3 of 12)	21969.0	NM_145476	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	5.15	5.07	9.25	2.7	3.27	4.02	1.06	0.88	2.5
Merged-chr8-111313029-1	chr8	111312529	111313529	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029005, intron 10 of 10)	intron (NM_029005, intron 10 of 10)	-12807.0	NM_146218	234736.0	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	2.29	2.3	5.55	2.7	1.87	4.82	0.0	1.77	1.25
Merged-chr11-102993062-1	chr11	102992562	102993562	+	562.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_026551)	TTS (NM_026551)	6859.0	NR_105896	102466988.0		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	2.86	0.46	1.85	2.7	4.67	0.8	1.06	0.44	1.25
Merged-chr11-75509168-1	chr11	75508668	75509668	+	562.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001029938)	promoter-TSS (NM_001029938)	-926.0	NM_001029938	280408.0	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	22.31	17.51	42.55	20.24	17.73	53.05	16.9	19.46	18.74
Merged-chr19-6243023-2	chr19	6242510	6243510	+	562.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194348, intron 1 of 39)	intron (NM_194348, intron 1 of 39)	1342.0	NM_194348	329015.0	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	52.63	20.27	33.3	33.74	22.39	12.86	29.57	34.05	8.74
Merged-chr1-156040180-2	chr1	156039682	156040682	+	562.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358627)	promoter-TSS (NM_001358627)	-658.0	NM_001358626	240832.0	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	31.46	43.31	40.7	31.71	27.52	28.13	43.3	42.89	36.85
Merged-chr8-107437186-1	chr8	107436686	107437686	+	562.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	788.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	91.53	115.2	61.97	89.74	143.22	87.61	122.52	166.25	83.69
Merged-chr11-120351031-1	chr11	120350531	120351531	+	562.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038126, exon 2 of 2)	non-coding (NR_038126, exon 2 of 2)	2353.0	NR_038126	66838.0	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	90.96	86.17	102.67	79.62	56.45	112.53	66.54	77.38	71.2
Merged-chr18-81566725-2	chr18	81566200	81567200	+	562.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	425380.0	NR_039589	100628596.0		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	1.14	0.92	3.7	3.37	1.4	3.22	3.17	2.65	3.75
Merged-chr4-139170442-1	chr4	139169942	139170942	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR79|LTR|ERVL	10213.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	68.07	56.68	28.67	150.46	94.7	76.36	64.43	55.71	34.35
Merged-chr10-84488518-1	chr10	84488018	84489018	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_108059, exon 1 of 4)	non-coding (NR_108059, exon 1 of 4)	225.0	NR_108059	75804.0		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA	6.29	0.46	1.85	8.77	0.47	4.82	1.06	0.44	0.62
Merged-chr18-39240625-1	chr18	39240125	39241125	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 14 of 21)	intron (NM_001361073, intron 14 of 21)	246620.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	37.76	23.04	9.25	22.94	14.93	13.66	15.84	11.94	9.99
Merged-chr1-36022829-1	chr1	36022329	36023329	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-45571.0	NM_015818	50785.0	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	12.59	6.91	9.25	4.72	4.67	3.22	13.73	3.98	2.5
Merged-chr7-45716703-1	chr7	45716203	45717203	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001172561, intron 1 of 5)	intron (NM_001172561, intron 1 of 5)	1299.0	NM_203280	56632.0	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	152.74	155.28	125.79	111.33	75.11	110.92	145.75	209.15	108.67
Merged-chr13-81703289-1	chr13	81702789	81703789	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081176, intron 1 of 7)	intron (NM_001081176, intron 1 of 7)	7724.0	NM_001081176	67486.0	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	4.58	2.76	1.85	2.02	7.46	4.82	0.0	1.33	1.25
Merged-chr12-91383713-1	chr12	91383213	91384213	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 1 of 25)	MIRb|SINE|MIR	696.0	NM_181815	75216.0	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	19.45	22.12	6.47	38.46	33.12	21.7	31.69	30.95	8.74
Merged-chr18-38211929-1	chr18	38211429	38212429	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2167.0	NM_029357	75599.0	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.29	0.92	0.0	10.8	3.73	5.63	12.67	0.88	3.75
Merged-chr13-64250681-1	chr13	64250181	64251181	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	B1_Mur2|SINE|Alu	1981.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	4.0	6.45	5.55	4.05	5.13	7.23	3.17	0.44	1.25
Merged-chr14-19752414-1	chr14	19751914	19752914	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008695, exon 2 of 21)	exon (NM_008695, exon 2 of 21)	1157.0	NM_008695	18074.0	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	5.72	15.67	7.4	17.54	8.86	8.04	10.56	4.42	1.25
Merged-chr12-101980393-1	chr12	101979893	101980893	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016856, intron 1 of 14)	RMER4B|LTR|ERVK	4419.0	NM_016856	51786.0	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	6.29	9.22	8.32	8.1	7.46	1.61	8.45	3.54	8.12
Merged-chr5-72491370-1	chr5	72490870	72491870	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122756, intron 1 of 21)	intron (NM_001122756, intron 1 of 21)	12838.0	NM_016869	53419.0	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.57	0.92	1.85	4.72	1.87	8.04	1.06	3.54	8.74
Merged-chr9-120941096-1	chr9	120940596	120941596	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007614, intron 1 of 14)	L2|LINE|L2	7518.0	NM_001165902	12387.0	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	14.3	11.52	9.25	16.19	9.33	13.66	9.51	3.1	3.75
Merged-chr5-140623491-1	chr5	140622991	140623991	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_175274, exon 14 of 14)	exon (NM_175274, exon 14 of 14)	16150.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.0	2.76	3.7	2.7	1.87	0.8	4.22	1.77	5.0
Merged-chr12-70145171-1	chr12	70144671	70145671	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9000.0	NM_001195033	100504285.0	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	6.29	2.3	3.7	0.0	3.27	0.0	3.17	0.88	2.5
Merged-chr5-100570788-1	chr5	100570288	100571288	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139198, intron 1 of 4)	intron (NM_139198, intron 1 of 4)	1417.0	NM_139198	231507.0	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	97.25	86.17	89.72	95.14	56.91	50.64	204.9	194.55	71.82
Merged-chr1-88221320-1	chr1	88220820	88221820	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-5700.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	12.01	14.28	23.12	21.59	35.92	24.92	15.84	25.2	19.36
Merged-chr9-114785934-1	chr9	114785434	114786434	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER5|LTR|ERV1	-3941.0	NM_001252479	102545.0	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	45.76	42.39	64.75	29.01	46.65	59.48	65.48	79.15	38.1
Merged-chrX-167262405-1	chrX	167261905	167262905	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001313760, intron 1 of 1)	B3|SINE|B2	1924.0	NM_001313761	170744.0	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	48.05	63.13	26.82	56.68	53.18	59.48	58.09	59.25	38.72
Merged-chr5-123288315-1	chr5	123287815	123288815	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-56133.0	NM_029850	77045.0	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	2.29	2.76	0.92	2.7	1.87	0.0	1.06	0.0	5.62
Merged-chr4-102665194-1	chr4	102664694	102665694	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	75351.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	11.44	11.06	17.57	12.14	5.6	17.68	11.62	6.19	16.86
Merged-chr10-25151392-1	chr10	25150892	25151892	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48778.0	NM_001347460	432442.0	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	18.31	19.35	20.35	18.89	10.73	22.51	20.07	11.5	16.86
Merged-chr6-125095486-1	chr6	125094986	125095986	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_145979)	promoter-TSS (NM_145979)	-495.0	NM_001346610	107932.0	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	48.62	31.33	31.45	42.51	19.13	25.72	31.69	26.53	28.73
Merged-chr4-139086227-1	chr4	139085727	139086727	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	6743.0	NM_008675	17965.0	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	6.86	2.3	0.0	4.72	0.93	0.0	1.06	1.77	2.5
Merged-chr5-9107965-1	chr5	9107465	9108465	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	7228.0	NM_001081029	652925.0	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	8.01	9.68	7.4	8.1	7.0	11.25	14.79	7.96	11.24
Merged-chr13-119617388-1	chr13	119616888	119617888	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6431.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	4.0	5.99	6.47	15.52	12.13	16.88	7.39	7.96	12.49
Merged-chr10-67202267-2	chr10	67201750	67202750	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207221, intron 3 of 25)	intron (NM_207221, intron 3 of 25)	16500.0	NM_001242396	108829.0	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	25.74	51.15	69.37	32.39	27.99	54.66	46.47	48.64	39.97
Merged-chrX-106150518-1	chrX	106150018	106151018	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 2 of 2)	RSINE1|SINE|B4	7243.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	27.46	34.56	25.9	47.9	50.38	53.05	40.14	20.34	20.61
Merged-chr11-117657543-1	chr11	117657043	117658043	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	3254.0	NM_198022	217351.0	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	16.59	8.29	5.55	12.14	5.13	5.63	9.51	5.75	7.49
Merged-chr2-13290833-1	chr2	13290333	13291333	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081084, intron 60 of 66)	intron (NM_001081084, intron 60 of 66)	-19418.0	NM_009105	20163.0	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	1.14	7.83	0.0	0.0	2.8	1.61	2.11	1.33	0.0
Merged-chr12-24595048-1	chr12	24594548	24595548	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145890, intron 6 of 13)	intron (NM_145890, intron 6 of 13)	14329.0	NM_145890	195733.0	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead like transcription factor 1	protein-coding	11.44	7.37	5.55	6.75	5.6	12.06	4.22	2.65	12.49
Merged-chr2-16551151-1	chr2	16550651	16551651	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026162, intron 3 of 13)	B3A|SINE|B2	194847.0	NM_026162	67448.0	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	2.29	2.76	6.47	4.05	3.73	0.0	2.11	0.88	1.25
Merged-chr15-91251730-1	chr15	91251230	91252230	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-59723.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	6.29	3.23	16.65	3.37	3.73	4.82	7.39	3.1	8.74
Merged-chr2-62653285-1	chr2	62652785	62653785	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7030.0	NM_001164477	71586.0	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	7.44	10.14	8.32	13.49	13.06	8.84	10.56	9.73	5.0
Merged-chr17-83973898-1	chr17	83973398	83974398	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24654.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	4.0	4.61	0.0	6.07	3.73	1.61	5.28	1.77	6.25
Merged-chr1-72280399-1	chr1	72279899	72280899	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356516, intron 1 of 6)	Tigger6a|DNA|TcMar-Tigger	3922.0	NM_023523	111175.0	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	2.29	5.99	1.85	5.4	4.67	5.63	2.11	1.77	1.25
Merged-chr2-167942424-2	chr2	167941934	167942934	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	10107.0	NM_011201	19246.0	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	50.34	66.35	47.17	60.05	64.84	68.32	72.88	51.73	48.09
Merged-chr3-9003259-1	chr3	9002759	9003759	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009412, intron 1 of 5)	intron (NM_009412, intron 1 of 5)	945.0	NM_001357073	21985.0	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	128.14	153.9	109.14	105.93	142.29	114.14	144.7	162.28	97.43
Merged-chr6-71487107-1	chr6	71486607	71487607	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6770.0	NM_009543	22644.0	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	13.73	6.91	13.87	8.77	7.0	14.47	16.9	14.59	23.11
Merged-chr5-64969074-1	chr5	64968574	64969574	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1A2|LTR|ERVL-MaLR	-1001.0	NM_026667	68303.0	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	19.45	21.66	18.5	37.78	14.93	38.58	20.07	25.65	8.74
Merged-chr9-45478224-1	chr9	45477724	45478724	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	intron (NM_001081270, intron 3 of 32)	-46992.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.58	3.23	4.62	2.7	3.73	4.02	10.56	9.29	11.24
Merged-chr5-5750150-1	chr5	5749650	5750650	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-833.0	NM_027399	70358.0	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	2.86	1.38	0.92	1.35	3.27	0.8	2.11	0.0	1.87
Merged-chr2-73273819-1	chr2	73273319	73274319	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001005343, exon 2 of 2)	exon (NM_001005343, exon 2 of 2)	1893.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	4.0	1.38	0.0	4.05	0.47	1.61	2.11	0.0	1.87
Merged-chr4-75297046-1	chr4	75296546	75297546	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-18754.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	13.73	15.21	12.95	4.72	7.0	14.47	16.9	15.48	14.36
Merged-chr7-106816002-1	chr7	106815502	106816502	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028910, intron 2 of 4)	intron (NM_028910, intron 2 of 4)	1873.0	NM_001360747	66786.0	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	5.72	4.15	12.95	4.05	5.13	6.43	2.11	3.54	7.49
Merged-chr7-49456336-1	chr7	49455836	49456836	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 7 of 37)	intron (NM_175272, intron 7 of 37)	180499.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	1.14	3.23	1.85	4.05	3.73	0.8	1.06	2.65	1.25
Merged-chr10-24173857-1	chr10	24173357	24174357	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	24540.0	NM_016797	53331.0	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	12.59	14.75	12.02	15.52	17.26	20.9	14.79	10.17	15.61
Merged-chr5-74386077-1	chr5	74385577	74386577	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114660, intron 5 of 8)	intron (NM_001114660, intron 5 of 8)	145665.0	NM_178672	212986.0	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	12.01	7.83	5.55	2.7	2.8	3.22	17.96	18.13	12.49
Merged-chr11-20553272-1	chr11	20552772	20553772	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021372, intron 1 of 1)	intron (NM_021372, intron 1 of 1)	10019.0	NM_021372	58172.0	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	43.48	66.81	55.5	60.05	44.78	49.83	63.37	65.44	34.35
Merged-chr9-56200847-1	chr9	56200347	56201347	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_172924)	TTS (NM_172924)	-39777.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	4.0	2.76	3.7	4.05	5.13	6.43	3.17	0.0	1.25
Merged-chr5-116031342-1	chr5	116030842	116031842	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6914.0	NM_031869	19079.0	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	1.14	2.3	3.7	2.7	1.4	1.61	0.0	1.77	0.0
Merged-chr13-108390798-1	chr13	108390298	108391298	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	74461.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	2.29	4.15	3.7	0.0	5.13	0.0	3.17	2.21	3.12
Merged-chr7-66113928-1	chr7	66113428	66114428	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081163, intron 1 of 2)	intron (NM_001081163, intron 1 of 2)	4413.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	13.16	17.97	11.1	11.47	8.4	9.65	20.07	14.15	6.87
Merged-chr6-84742430-1	chr6	84741930	84742930	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177077, intron 20 of 21)	MLT1H|LTR|ERVL-MaLR	-148522.0	NM_001177713	232174.0	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	14.3	11.52	18.5	10.8	14.46	15.27	11.62	5.75	6.25
Merged-chr1-161286940-1	chr1	161286440	161287440	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35730.0	NM_001303408	11758.0	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	1.14	1.38	1.85	0.67	6.06	0.0	0.0	1.77	2.5
Merged-chr6-73239047-1	chr6	73238547	73239547	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9458.0	NM_019879	56451.0	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	1.14	2.76	0.0	3.37	3.73	3.22	10.56	12.82	13.74
Merged-chr7-99249761-1	chr7	99249261	99250261	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11150.0	NM_177448	233549.0	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	5.15	1.84	0.0	3.37	2.33	6.43	1.06	0.88	8.74
Merged-chr1-77513604-1	chr1	77513104	77514104	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	1484.0	NM_007936	13838.0	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	9.15	3.23	0.0	4.05	0.0	0.0	1.06	0.88	3.75
Merged-chr17-27700062-1	chr17	27699562	27700562	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178365, intron 1 of 9)	intron (NM_178365, intron 1 of 9)	14823.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	26.89	17.51	20.35	14.84	15.86	26.53	42.25	28.74	17.49
Merged-chr17-64559234-1	chr17	64558734	64559734	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3644.0	NR_045899	100043582.0	Mm.11170	NR_045899	ENSMUSG00000073377	AU016765	-	expressed sequence AU016765	ncRNA	1.14	2.76	1.85	4.05	3.73	9.65	3.17	0.0	2.5
Merged-chr4-6469051-1	chr4	6468551	6469551	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-14780.0	NM_010945	18201.0	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	12.59	6.91	7.4	7.42	8.86	2.41	5.28	1.77	0.0
Merged-chr9-106362153-1	chr9	106361653	106362653	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-6479.0	NM_153459	235584.0	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	4.0	3.23	0.0	3.37	3.27	3.22	3.17	3.98	8.12
Merged-chr4-33076345-1	chr4	33075845	33076845	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008076, intron 2 of 8)	intron (NM_008076, intron 2 of 8)	13233.0	NM_008076	14409.0	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	4.0	1.84	1.85	0.67	0.0	1.61	5.28	4.42	1.25
Merged-chr12-35384404-1	chr12	35383904	35384904	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	150585.0	NM_013464	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	8.01	8.75	5.55	8.77	2.33	9.65	4.22	7.96	0.0
Merged-chr10-59268980-2	chr10	59268475	59269475	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	47053.0	NM_172939	268301.0	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	20.02	15.21	21.27	19.57	14.93	16.08	35.91	29.18	16.24
Merged-chr10-67296974-1	chr10	67296474	67297474	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11693.0	NM_001036293	641340.0	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	24.6	15.67	12.02	24.96	15.39	12.06	14.79	22.99	14.36
Merged-chr13-67728216-1	chr13	67727716	67728716	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145622, intron 1 of 3)	intron (NM_145622, intron 1 of 3)	957.0	NM_145622	235907.0	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	16.59	16.59	21.27	14.17	23.33	28.94	58.09	33.6	15.61
Merged-chr15-84947588-1	chr15	84947088	84948088	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001033273, exon 10 of 10)	3' UTR (NM_001033273, exon 10 of 10)	4035.0	NR_037206	100526461.0		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	1.72	3.69	11.1	9.45	3.27	10.45	7.39	1.77	5.0
Merged-chr3-88554431-1	chr3	88553931	88554931	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033526, intron 1 of 10)	intron (NM_033526, intron 1 of 10)	715.0	NM_033526	94232.0	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	19.45	21.66	27.75	29.69	20.53	22.51	34.85	20.78	21.23
Merged-chr12-117845122-1	chr12	117844622	117845622	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146040, intron 1 of 9)	intron (NM_146040, intron 1 of 9)	1261.0	NM_146040	217946.0	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	6.86	10.14	19.42	6.07	8.4	1.61	16.9	9.29	4.37
Merged-chr17-35469120-1	chr17	35468620	35469620	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010391)	promoter-TSS (NM_010391)	-969.0	NM_010391	15007.0	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	5.15	2.76	1.85	8.1	2.33	1.61	3.17	0.0	1.25
Merged-chr17-5479141-1	chr17	5478641	5479641	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2a|LTR|ERVL-MaLR	3928.0	NR_073378	666919.0		NR_073378		Gm8363	EG666919	non-SMC condensin II complex, subunit H2 pseudogene	pseudo	1.72	1.84	1.85	4.05	6.06	3.22	6.34	6.63	7.49
Merged-chr18-39150629-1	chr18	39150129	39151129	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 11 of 21)	LTR89|LTR|ERVL?	157484.0	NM_175164	71302.0	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	6.86	1.38	7.4	8.77	2.33	6.43	6.34	2.21	3.75
Merged-chr4-88738676-1	chr4	88738176	88739176	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16168.0	NM_172871	242521.0	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	3.43	8.29	1.85	4.72	0.93	3.22	6.34	2.21	1.25
Merged-chr7-113312005-1	chr7	113311505	113312505	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357070, intron 18 of 19)	intron (NM_001357070, intron 18 of 19)	57334.0	NM_133700	68815.0	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	2.29	4.15	0.0	1.35	2.8	0.0	1.06	2.21	6.87
Merged-chr19-10697382-1	chr19	10696882	10697882	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001361958, intron 1 of 4)	L1MEc|LINE|L1	-3386.0	NM_001361964	107305.0	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	20.02	16.13	16.65	9.45	5.13	19.29	20.07	17.24	15.61
Merged-chr10-16714705-1	chr10	16714205	16715205	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	381077.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.86	5.99	0.92	2.02	2.8	0.0	0.0	2.21	3.75
Merged-chr2-65245664-1	chr2	65245164	65246164	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-7038.0	NM_027225	319876.0	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	3.43	10.6	3.7	0.0	1.4	1.61	0.0	3.1	1.25
Merged-chr10-22010385-1	chr10	22009885	22010885	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15719.0	NM_011361	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.86	0.92	1.85	7.42	2.33	1.61	0.0	0.0	3.75
Merged-chr2-163532169-1	chr2	163531669	163532669	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001312906, intron 1 of 10)	intron (NM_001312906, intron 1 of 10)	9552.0	NR_027970	68314.0	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	5.72	0.92	0.92	2.7	0.93	0.0	5.28	1.77	3.75
Merged-chr10-14200418-1	chr10	14199918	14200918	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	234039.0	NM_010437	15273.0	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	12.59	3.69	0.0	6.07	3.73	5.63	0.0	7.07	3.75
Merged-chr10-95262603-2	chr10	95262116	95263116	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330138, intron 2 of 2)	intron (NM_001330138, intron 2 of 2)	61093.0	NM_001330138	12905.0	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	29.17	41.93	15.72	42.51	30.79	31.35	63.37	56.16	35.6
Merged-chr13-60491828-1	chr13	60491328	60492328	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-110119.0	NM_001285917	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	32.61	53.45	25.9	2.7	5.13	6.43	43.3	51.29	28.73
Merged-chr3-116047206-1	chr3	116046706	116047706	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38909.0	NM_001163514	58193.0	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	10.87	5.99	7.4	2.02	5.13	2.41	2.11	4.86	2.5
Merged-chr18-77799436-1	chr18	77798936	77799936	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	B1F|SINE|Alu	-3046.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	70.93	64.97	39.77	58.7	54.11	53.85	79.21	72.07	26.85
Merged-chr13-73764620-1	chr13	73764120	73765120	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360694, intron 1 of 24)	intron (NM_001360694, intron 1 of 24)	923.0	NM_011390	20499.0	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	42.9	58.06	79.55	48.58	55.51	65.11	59.15	71.19	47.46
Merged-chr2-102896608-1	chr2	102896108	102897108	+	562.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039150, intron 1 of 13)	intron (NM_001039150, intron 1 of 13)	5057.0	NM_001177785	12505.0	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	14.3	7.83	12.95	22.94	8.86	20.9	38.02	20.34	36.85
Merged-chr11-77515780-1	chr11	77515280	77516280	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026185, exon 1 of 2)	exon (NM_026185, exon 1 of 2)	663.0	NM_026185	67477.0	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	25.17	11.52	12.95	30.36	18.19	28.94	23.24	13.71	16.24
Merged-chr18-76978153-1	chr18	76977653	76978653	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33769.0	NM_001361227	76987.0	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.57	0.92	0.0	0.0	0.47	0.8	0.0	3.54	4.37
Merged-chr2-14244340-1	chr2	14243840	14244840	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008625, intron 3 of 29)	intron (NM_008625, intron 3 of 29)	14926.0	NM_008625	17533.0	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	46.91	48.38	37.0	30.36	33.12	45.82	49.64	44.66	43.72
Merged-chr4-137707436-1	chr4	137706936	137707936	+	562.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001331215)	promoter-TSS (NM_001331215)	-69.0	NM_001331215	110351.0	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	2.86	0.0	0.0	0.67	0.47	3.22	0.0	0.44	0.0
Merged-chr4-153515664-1	chr4	153515164	153516164	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-32834.0	NM_001099299	230959.0	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	4.0	0.92	1.85	2.02	2.8	1.61	2.11	0.88	9.99
Merged-chr5-101990468-1	chr5	101989968	101990968	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 3 of 66)	intron (NM_172882, intron 3 of 66)	79453.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	16.59	16.13	11.1	23.62	18.19	14.47	22.18	15.92	18.11
Merged-chr19-10173106-1	chr19	10172606	10173606	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9782.0	NM_146094	76267.0	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	42.33	47.92	47.17	55.33	44.78	48.23	23.24	33.6	24.98
Merged-chr5-124353398-1	chr5	124352898	124353898	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013812, intron 1 of 3)	intron (NM_013812, intron 1 of 3)	1230.0	NM_013812	13445.0	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	21.17	9.22	12.95	18.89	5.13	9.65	11.62	9.29	5.0
Merged-chr4-133200024-1	chr4	133199524	133200524	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4369.0	NR_105984	102466215.0		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	14.87	8.29	19.42	16.19	4.67	8.84	6.34	3.54	11.24
Merged-chr7-80114192-1	chr7	80113692	80114692	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	1158.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	36.04	23.04	27.75	24.29	21.93	35.37	24.29	19.46	24.98
Merged-chr7-80103776-1	chr7	80103276	80104276	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173011, intron 1 of 10)	intron (NM_173011, intron 1 of 10)	11574.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	9.15	8.29	12.95	13.49	7.93	20.09	4.22	1.77	6.25
Merged-chr2-155682131-1	chr2	155681631	155682631	+	562.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019828, intron 1 of 18)	L1MB7|LINE|L1	10253.0	NM_019828	56407.0	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	12.59	2.76	1.85	4.72	5.13	10.45	10.56	2.21	5.0
Merged-chr6-108055255-2	chr6	108054762	108055762	+	561.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9783.0	NM_001276356	74729.0	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	2.86	0.92	0.0	2.02	0.93	0.0	0.0	0.44	2.5
Merged-chr1-155223940-1	chr1	155223440	155224440	+	561.666687	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	65237.0	NM_021433	58244.0	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	8.01	1.84	3.7	9.45	3.73	4.82	10.56	5.75	3.75
Merged-chr1-165958331-3	chr1	165957818	165958818	+	561.666687	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198932, intron 1 of 15)	intron (NM_198932, intron 1 of 15)	-23370.0	NM_198933	18986.0	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	2.86	6.91	11.1	6.07	6.06	4.02	13.73	11.5	12.49
Merged-chr16-91886043-1	chr16	91885543	91886543	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010587, intron 28 of 38)	intron (NM_010587, intron 28 of 38)	45587.0	NM_138597	28080.0	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	6.86	6.45	1.85	6.07	7.0	10.45	6.34	4.42	1.25
Merged-chr14-70768152-1	chr14	70767652	70768652	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1524.0	NM_023045	65246.0	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	44.05	58.98	53.65	43.18	34.52	75.56	60.2	61.46	49.96
Merged-chr7-24817681-2	chr7	24817180	24818180	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1115.0	NR_045096	545936.0	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	3.43	2.3	3.7	2.7	2.33	4.02	1.06	1.33	1.25
Merged-chr1-55436785-1	chr1	55436285	55437285	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	30839.0	NM_001114663	227120.0	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	7.44	5.99	8.32	9.45	6.06	5.63	8.45	1.33	8.74
Merged-chr13-49653465-1	chr13	49652965	49653965	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025495)	promoter-TSS (NM_025495)	387.0	NR_073167	70930.0	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	73.79	103.68	115.62	74.89	137.15	110.92	157.37	145.03	59.95
Merged-chr14-64934044-1	chr14	64933544	64934544	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177338, intron 1 of 9)	B3|SINE|B2	15813.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	12.59	8.75	10.17	8.1	8.86	12.86	10.56	5.31	10.62
Merged-chr11-93985569-1	chr11	93985069	93986069	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10522.0	NM_001199203	70834.0	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	32.04	26.73	25.9	9.45	2.33	4.82	13.73	19.01	13.74
Merged-chr2-79228802-2	chr2	79228313	79229313	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-26613.0	NM_010576	16401.0	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	63.5	52.07	74.0	46.56	27.99	45.01	54.92	53.94	45.59
Merged-chr4-93598636-2	chr4	93598132	93599132	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEc|LINE|L1	-263121.0	NM_026954	69136.0	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	14.87	10.6	4.62	2.02	2.33	4.82	4.22	0.88	1.87
Merged-chr11-20917747-1	chr11	20917247	20918247	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86639.0	NM_173752	216551.0	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	3.43	3.23	7.4	5.4	6.06	1.61	9.51	3.1	6.25
Merged-chr9-70843620-1	chr9	70843120	70844120	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001324473, intron 1 of 8)	B4A|SINE|B4	91188.0	NM_008280	15450.0	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	22.88	23.5	46.25	35.09	29.86	31.35	25.35	27.41	32.48
Merged-chr2-151575697-1	chr2	151575197	151576197	+	561.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145535, intron 1 of 8)	intron (NM_145535, intron 1 of 8)	3074.0	NM_145535	228765.0	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	33.18	51.15	29.6	35.76	38.72	65.91	52.81	57.04	33.72
Merged-chr15-103281561-2	chr15	103281071	103282071	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019817, intron 1 of 8)	intron (NM_019817, intron 1 of 8)	-3554.0	NR_029766	724064.0		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	25.74	32.25	35.15	18.22	13.53	16.08	30.63	18.13	26.23
Merged-chr15-67088303-1	chr15	67087803	67088803	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER53|DNA|hAT	88579.0	NM_009177	20442.0	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	12.59	11.52	12.95	12.14	11.66	4.82	9.51	5.31	7.49
Merged-chr3-87504493-2	chr3	87503987	87504987	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-21091.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	2.86	1.84	0.0	1.35	2.33	0.0	4.22	1.33	1.25
Merged-chr3-96055623-1	chr3	96055123	96056123	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013841, intron 2 of 14)	intron (NM_013841, intron 2 of 14)	2832.0	NM_013841	22365.0	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	2.29	2.76	1.85	4.05	7.93	12.06	6.34	3.1	8.74
Merged-chr7-67360025-1	chr7	67359525	67360525	+	561.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357324, intron 1 of 11)	L1MC4|LINE|L1	12833.0	NM_001291192	17258.0	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	24.6	26.73	16.65	22.27	15.39	24.92	23.24	15.92	9.99
Merged-chr17-25894140-2	chr17	25893636	25894636	+	561.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	8091.0	NR_028042	100043160.0	Mm.482893	NR_028042		Gm10012	-	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	4.0	1.84	4.62	8.1	1.87	2.41	0.0	3.98	2.5
Merged-chr11-82021615-2	chr11	82021098	82022098	+	561.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13979.0	NM_011333	20296.0	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	23.45	12.44	15.72	14.17	2.33	8.04	17.96	8.84	8.74
Merged-chrX-53052641-2	chrX	53052127	53053127	+	561.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_029776)	TTS (NR_029776)	726.0	NR_029776	723910.0		NR_029776	ENSMUSG00000065503	Mir351	Mirn351|mmu-mir-351	microRNA 351	ncRNA	2.29	0.92	1.85	2.7	0.0	0.0	2.11	0.0	7.49
Merged-chr6-87466422-2	chr6	87465911	87466911	+	561.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_104483, exon 8 of 11)	non-coding (NR_104483, exon 8 of 11)	29916.0	NR_104483	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	10.87	7.37	1.85	5.4	5.6	3.22	6.34	0.44	2.5
Merged-chr5-49090381-1	chr5	49089881	49090881	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	195278.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	1.14	1.84	5.55	2.7	2.8	3.22	1.06	6.19	1.25
Merged-chr10-8387441-1	chr10	8386941	8387941	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177387, intron 2 of 7)	intron (NM_177387, intron 2 of 7)	131384.0	NM_177387	338362.0	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	20.59	23.5	25.9	17.54	17.26	24.11	36.97	34.49	21.23
Merged-chr17-43675372-1	chr17	43674872	43675872	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285947, intron 1 of 10)	intron (NM_001285947, intron 1 of 10)	8000.0	NM_018887	56050.0	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	3.43	3.23	1.85	3.37	3.73	4.82	2.11	2.65	2.5
Merged-chr5-147848414-1	chr5	147847914	147848914	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12214.0	NM_025624	66537.0	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	1.14	3.69	0.0	4.72	3.73	0.0	2.11	1.33	3.75
Merged-chr15-103315159-1	chr15	103314659	103315659	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013866, exon 8 of 8)	exon (NM_013866, exon 8 of 8)	-4721.0	NM_030720	80910.0	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.57	1.84	5.55	4.72	2.8	0.0	2.11	0.44	5.0
Merged-chr17-56339181-1	chr17	56338681	56339681	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	13131.0	NM_001357909	193796.0	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b	lysine (K)-specific demethylase 4B	protein-coding	2.29	5.99	7.4	3.37	6.06	14.47	3.17	2.21	4.37
Merged-chr9-116170014-1	chr9	116169514	116170514	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009371, intron 1 of 7)	intron (NM_009371, intron 1 of 7)	5349.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	13.16	10.6	27.75	12.82	13.53	11.25	6.34	3.98	6.87
Merged-chr2-76049796-1	chr2	76049296	76050296	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081033, intron 14 of 19)	intron (NM_001081033, intron 14 of 19)	-67829.0	NM_030188	78802.0	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	8.01	7.37	5.55	4.05	7.46	11.25	7.39	6.19	1.25
Merged-chr7-123346176-1	chr7	123345676	123346676	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316713, intron 1 of 19)	intron (NM_001316713, intron 1 of 19)	23739.0	NM_001122643	70497.0	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	9.15	14.28	13.87	18.89	15.86	16.08	20.07	17.24	16.24
Merged-chr12-99953110-1	chr12	99952610	99953610	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028354, intron 15 of 15)	intron (NM_028354, intron 15 of 15)	-11389.0	NM_001164426	217826.0	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.43	0.92	5.55	5.4	0.47	0.0	1.06	0.44	5.62
Merged-chr1-156425760-1	chr1	156425260	156426260	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4845.0	NM_001346967	77352.0	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	9.72	10.14	15.72	3.37	2.33	12.86	4.22	3.54	7.49
Merged-chrX-106190271-1	chrX	106189771	106190771	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008828, intron 1 of 10)	intron (NM_008828, intron 1 of 10)	3171.0	NM_008828	18655.0	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	16.02	10.14	12.95	14.17	10.73	22.51	17.96	14.59	6.87
Merged-chr1-152609721-1	chr1	152609221	152610221	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	15496.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	49.77	68.66	32.37	53.3	34.52	36.97	42.25	42.01	29.98
Merged-chr2-35733901-1	chr2	35733401	35734401	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	37169.0	NM_001290639	69601.0	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	16.02	5.99	0.0	2.7	3.27	7.23	7.39	5.75	11.87
Merged-chr14-77921956-1	chr14	77921456	77922456	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029495, intron 1 of 11)	B4A|SINE|B4	17717.0	NM_029495	108670.0	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	11.44	10.6	7.4	15.52	9.8	19.29	24.29	20.34	24.98
Merged-chrX-9654653-1	chrX	9654153	9655153	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025975, exon 5 of 5)	3' UTR (NM_025975, exon 5 of 5)	8330.0	NM_025975	67117.0	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	9.15	7.83	5.55	15.52	10.73	14.47	1.06	0.88	0.62
Merged-chr11-4236381-1	chr11	4235881	4236881	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013365)	promoter-TSS (NM_001013365)	-404.0	NM_001013365	18413.0	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	6.29	2.76	10.17	16.19	8.86	12.06	4.22	2.65	3.12
Merged-chrX-166236489-1	chrX	166235989	166236989	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2454.0	NM_001177961	14758.0	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	4.58	8.29	14.8	15.52	11.66	11.25	13.73	11.5	16.86
Merged-chr12-87391523-1	chr12	87391023	87392023	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3168.0	NM_011479	20773.0	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	4.0	4.15	14.8	9.45	2.8	12.86	10.56	3.98	5.62
Merged-chr17-80048434-1	chr17	80047934	80048934	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152119, intron 6 of 13)	intron (NR_152119, intron 6 of 13)	13834.0	NR_152119	72692.0	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	5.72	4.61	1.85	4.05	6.06	4.82	7.39	0.88	5.0
Merged-chr2-18202050-1	chr2	18201550	18202550	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010804, intron 16 of 22)	intron (NM_010804, intron 16 of 22)	137465.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	7.44	6.45	12.95	6.07	7.0	8.04	3.17	5.31	7.49
Merged-chr4-59188653-1	chr4	59188153	59189153	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011673)	promoter-TSS (NM_011673)	-897.0	NM_011673	22234.0	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	22.31	42.39	31.45	55.33	48.98	48.23	66.54	59.25	54.96
Merged-chr1-72230850-1	chr1	72230350	72231350	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13143.0	NR_155355	320933.0	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	8.58	0.92	5.55	1.35	0.93	0.0	3.17	1.33	0.0
Merged-chr10-118081081-1	chr10	118080581	118081581	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEb|LTR|ERVL-MaLR	-60706.0	NM_001162904	17245.0	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	120.13	86.17	95.27	124.82	72.31	103.69	137.3	135.3	51.21
Merged-chrX-36800144-1	chrX	36799644	36800644	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	4547.0	NM_007451	11740.0	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	5.15	7.83	4.62	11.47	5.6	4.82	4.22	10.61	7.49
Merged-chr9-46926464-1	chr9	46925964	46926964	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_015605, exon 4 of 4)	non-coding (NR_015605, exon 4 of 4)	12861.0	NR_015605	73040.0	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	2.29	3.23	3.7	4.05	0.93	3.22	6.34	3.1	2.5
Merged-chr1-152582967-1	chr1	152582467	152583467	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016846, intron 3 of 17)	Arthur1|DNA|hAT-Tip100	42250.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	118.99	117.96	82.32	112.0	79.31	79.58	80.27	109.66	73.07
Merged-chr8-13661606-1	chr8	13661106	13662106	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009025, intron 1 of 23)	Lx7|LINE|L1	15981.0	NM_009025	19414.0	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	22.88	17.97	42.55	38.46	23.79	49.83	35.91	22.11	32.48
Merged-chr1-137899087-1	chr1	137898587	137899587	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67368.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	43.48	68.66	38.85	55.33	52.72	66.71	84.49	81.36	53.71
Merged-chr2-153298639-1	chr2	153298139	153299139	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008444, intron 1 of 8)	intron (NM_008444, intron 1 of 8)	7223.0	NM_008444	16569.0	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	90.38	109.67	90.65	66.8	53.18	92.44	96.11	94.62	76.82
Merged-chrX-96153793-1	chrX	96153293	96154293	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010833, intron 4 of 12)	intron (NM_010833, intron 4 of 12)	57748.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	9.15	11.98	10.17	11.47	7.0	10.45	10.56	9.29	14.99
Merged-chr7-121047404-1	chr7	121046904	121047904	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021554, intron 1 of 4)	B2_Mm2|SINE|B2	12959.0	NM_021554	59052.0	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	8.01	11.06	1.85	10.12	3.73	9.65	10.56	3.98	5.0
Merged-chr6-116072450-1	chr6	116071950	116072950	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-77445.0	NM_026376	67784.0	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	61.21	92.62	51.8	89.74	90.97	72.34	66.54	45.54	27.48
Merged-chr18-4959350-1	chr18	4958850	4959850	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-87239.0	NM_153153	225115.0	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	1.14	5.53	3.7	10.12	4.2	11.25	2.11	2.21	7.49
Merged-chr1-171330824-1	chr1	171330324	171331324	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357553, intron 1 of 4)	intron (NM_001357553, intron 1 of 4)	1255.0	NM_001357553	21945.0	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	37.18	24.88	25.9	19.57	16.79	32.96	19.01	18.13	8.74
Merged-chr3-105046039-2	chr3	105045554	105046554	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030249, intron 1 of 5)	intron (NM_030249, intron 1 of 5)	6899.0	NM_001163332	80281.0	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	105.26	125.79	112.84	103.91	87.7	105.3	140.47	159.18	69.32
Merged-chr3-146811436-1	chr3	146810936	146811936	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011100, intron 1 of 9)	intron (NM_011100, intron 1 of 9)	1510.0	NM_011100	18749.0	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	9.15	6.91	3.7	8.77	6.06	7.23	5.28	5.75	4.37
Merged-chr10-96503480-1	chr10	96502980	96503980	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-113521.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	8.01	5.53	6.47	12.82	5.6	7.23	9.51	3.98	5.0
Merged-chr2-178870142-1	chr2	178869642	178870642	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	439627.0	NM_198656	381409.0	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	1.72	5.07	0.0	3.37	6.06	0.0	6.34	1.77	12.49
Merged-chr11-106206787-1	chr11	106206287	106207287	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026009, intron 6 of 12)	intron (NM_026009, intron 6 of 12)	9580.0	NM_026009	67163.0	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	18.88	18.43	19.42	24.96	20.53	22.51	17.96	25.65	26.23
Merged-chr15-83096113-1	chr15	83095613	83096613	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4092.0	NM_023475	68607.0	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	8.01	5.07	0.0	3.37	3.27	0.0	1.06	4.86	1.25
Merged-chr1-43827134-1	chr1	43826634	43827634	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026430, intron 1 of 14)	intron (NM_026430, intron 1 of 14)	574.0	NM_026430	67883.0	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	79.52	88.47	62.9	79.62	97.03	90.02	78.16	68.54	62.45
Merged-chr1-57500000-1	chr1	57499500	57500500	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-93326.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	2.86	1.84	3.7	11.47	4.2	4.82	3.17	1.77	5.0
Merged-chr17-31052455-1	chr17	31051955	31052955	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16-int|LTR|ERVK	-5239.0	NM_009593	11307.0	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP binding cassette subfamily G member 1	protein-coding	9.72	7.37	8.32	12.14	4.2	0.0	10.56	4.42	3.75
Merged-chr14-30699883-1	chr14	30699383	30700383	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14966.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	6.29	1.38	0.0	4.72	2.8	1.61	3.17	0.44	3.75
Merged-chr4-125201845-1	chr4	125201345	125202345	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-73964.0	NM_153159	230738.0	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	4.58	1.38	5.55	3.37	1.87	4.02	1.06	0.88	1.25
Merged-chr6-134064271-1	chr6	134063771	134064771	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	28571.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	46.91	51.15	49.95	39.13	30.32	48.23	36.97	46.43	36.22
Merged-chr7-144938934-1	chr7	144938434	144939434	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007631, intron 1 of 4)	intron (NM_007631, intron 1 of 4)	991.0	NM_007631	12443.0	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	65.21	69.58	49.95	76.24	59.71	86.01	106.67	123.36	34.97
Merged-chr19-40371925-1	chr19	40371425	40372425	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034962, intron 7 of 22)	intron (NM_001034962, intron 7 of 22)	30385.0	NM_001034964	20411.0	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.57	4.15	5.55	4.05	5.6	2.41	0.0	1.33	1.25
Merged-chr12-82195125-1	chr12	82194625	82195625	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 1 of 23)	intron (NM_001167983, intron 1 of 23)	25109.0	NM_001167983	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	7.44	7.37	1.85	19.57	8.4	4.82	6.34	3.1	4.37
Merged-chr4-141853540-1	chr4	141853040	141854040	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RodERV21-int|LTR|ERV1	-7181.0	NM_001033875	76701.0	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	3.43	2.3	1.85	6.07	0.47	0.0	5.28	0.88	1.25
Merged-chr13-111748777-1	chr13	111748277	111749277	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011945, exon 20 of 20)	3' UTR (NM_011945, exon 20 of 20)	60216.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	2.86	0.92	5.55	2.02	3.27	2.41	1.06	1.33	1.25
Merged-chr8-70674179-2	chr8	70673678	70674678	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015816, intron 1 of 4)	ID_B1|SINE|B4	947.0	NM_015816	50783.0	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	149.88	173.72	133.19	190.95	166.54	171.21	204.9	213.12	102.42
Merged-chr4-127169657-1	chr4	127169157	127170157	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198618, intron 1 of 11)	CpG	453.0	NM_198618	242667.0	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	DLG associated protein 3	protein-coding	4.58	2.3	6.47	2.7	1.4	8.04	4.22	0.88	5.0
Merged-chr10-53499712-1	chr10	53499212	53500212	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_037973, exon 4 of 4)	non-coding (NR_037973, exon 4 of 4)	19277.0	NR_037973	100502868.0	Mm.297722	NR_037973	ENSMUSG00000112739	Gm20597	B230314j19	predicted gene, 20597	ncRNA	4.58	4.15	2.77	3.37	1.87	0.0	3.17	3.98	5.0
Merged-chr7-97313326-1	chr7	97312826	97313826	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177412, intron 7 of 9)	intron (NM_001177412, intron 7 of 9)	12638.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.57	5.53	3.7	4.05	0.93	3.22	1.06	3.54	3.75
Merged-chr13-41539767-1	chr13	41539267	41540267	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-52407.0	NM_001111324	18003.0	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	4.0	4.61	0.0	2.7	2.33	9.65	3.17	0.88	1.25
Merged-chr14-32572698-1	chr14	32572198	32573198	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-26710.0	NM_001347590	107751.0	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	2.86	2.3	1.85	1.35	5.13	4.82	5.28	0.0	3.75
Merged-chr5-23783134-1	chr5	23782634	23783634	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178403, intron 1 of 15)	intron (NM_178403, intron 1 of 15)	577.0	NM_001289780	78697.0	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	18.88	13.82	15.72	14.17	10.73	13.66	15.84	7.96	3.75
Merged-chr14-117779199-2	chr14	117778697	117779697	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011821, intron 4 of 8)	intron (NM_011821, intron 4 of 8)	174650.0	NR_105747	102465148.0		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	3.43	8.75	11.1	8.1	3.27	4.82	10.56	10.61	2.5
Merged-chr7-28446577-1	chr7	28446077	28447077	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_022024, exon 7 of 7)	3' UTR (NM_022024, exon 7 of 7)	-5408.0	NM_030562	80749.0	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	6.29	11.52	0.0	6.07	4.67	5.63	6.34	3.54	5.62
Merged-chr19-17246162-1	chr19	17245662	17246662	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLTR14|LTR|ERV1	93343.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	14.3	8.75	16.65	13.49	10.73	5.63	5.28	1.77	5.0
Merged-chr10-91139288-1	chr10	91138788	91139788	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-15325.0	NM_133668	18674.0	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	88.67	111.97	56.42	98.51	129.69	87.61	120.41	131.32	78.07
Merged-chr7-120830414-1	chr7	120829914	120830914	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-12417.0	NM_007908	13631.0	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	25.17	35.48	67.52	32.39	29.39	36.17	26.4	21.22	17.49
Merged-chr6-31111039-1	chr6	31110539	31111539	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-47946.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	84.66	59.9	65.67	96.48	49.92	91.63	125.69	106.56	65.58
Merged-chr1-91278652-1	chr1	91278152	91279152	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001355764, intron 8 of 10)	intron (NM_001355764, intron 8 of 10)	-19686.0	NM_016717	50880.0	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	10.87	18.89	16.65	6.75	3.73	5.63	10.56	6.63	19.98
Merged-chr4-129702222-1	chr4	129701722	129702722	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045036)	TTS (NR_045036)	-5377.0	NM_001356378	230770.0	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	22.31	20.74	25.9	30.36	17.73	14.47	42.25	22.99	29.98
Merged-chr11-96938593-1	chr11	96938093	96939093	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_134021, exon 7 of 7)	3' UTR (NM_134021, exon 7 of 7)	5426.0	NM_134021	103711.0	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	33.75	28.11	53.65	5.4	6.53	9.65	11.62	13.71	27.48
Merged-chr1-105813453-1	chr1	105812953	105813953	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009399, intron 3 of 9)	intron (NM_009399, intron 3 of 9)	32730.0	NM_009399	21934.0	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	2.29	4.61	3.7	4.05	4.2	4.82	4.22	4.42	4.37
Merged-chr1-173981706-1	chr1	173981206	173982206	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008327, intron 1 of 6)	intron (NM_008327, intron 1 of 6)	1138.0	NM_008327	26388.0	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	14.3	14.75	15.72	45.88	32.19	25.72	5.28	2.21	2.5
Merged-chr10-61052394-1	chr10	61051894	61052894	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	21091.0	NR_040638	327760.0	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	1.72	0.92	11.1	0.67	0.93	4.02	0.0	0.0	0.62
Merged-chr18-43322089-1	chr18	43321589	43322589	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291455, exon 14 of 14)	3' UTR (NM_001291455, exon 14 of 14)	51183.0	NM_001136086	22240.0	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	2.86	2.3	3.7	1.35	3.27	1.61	1.06	2.21	7.49
Merged-chr7-19876135-2	chr7	19875618	19876618	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_177036, exon 7 of 7)	3' UTR (NM_177036, exon 7 of 7)	11847.0	NM_177036	319930.0	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	31.46	25.34	12.02	34.41	20.06	32.96	36.97	38.91	19.36
Merged-chr13-58486817-1	chr13	58486317	58487317	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-83474.0	NM_001301341	15387.0	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	38.9	56.68	32.37	65.45	47.12	68.32	80.27	76.94	59.33
Merged-chr17-8164163-2	chr17	8163633	8164633	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1385.0	NM_001197046	75296.0	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	49.77	48.38	55.5	37.78	19.59	55.46	20.07	19.46	14.99
Merged-chr13-31082628-1	chr13	31082128	31083128	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108581.0	NM_025588	66482.0	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	3.43	5.99	0.0	0.67	3.73	1.61	7.39	1.77	5.62
Merged-chr7-142385483-1	chr7	142384983	142385983	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_009983, exon 2 of 9)	exon (NM_009983, exon 2 of 9)	2387.0	NM_009983	13033.0	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	49.2	40.55	49.02	25.64	18.19	24.92	68.65	57.92	19.36
Merged-chr11-83664255-1	chr11	83663755	83664755	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013652, intron 2 of 2)	intron (NM_013652, intron 2 of 2)	1671.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	145.87	165.88	111.92	160.58	114.76	131.02	122.52	155.64	61.83
Merged-chr16-93081741-2	chr16	93081246	93082246	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-255672.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	13.16	6.91	7.4	6.07	4.2	1.61	7.39	2.65	9.37
Merged-chrX-47846245-1	chrX	47845745	47846745	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053123, intron 16 of 23)	Lx9|LINE|L1	46368.0	NM_053123	93761.0	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	2.29	4.15	7.4	0.67	3.27	4.82	1.06	3.1	3.75
Merged-chr5-142903934-1	chr5	142903434	142904434	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_007393, exon 6 of 6)	exon (NM_007393, exon 6 of 6)	2820.0	NM_007393	11461.0	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	30.32	22.12	18.5	16.19	12.13	15.27	23.24	15.48	19.36
Merged-chr1-80720292-1	chr1	80719792	80720792	+	561.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175291, intron 1 of 55)	Charlie22a|DNA|hAT-Charlie	38261.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	24.03	26.26	21.27	20.92	20.99	16.08	39.08	22.55	24.98
Merged-chr7-98770597-1	chr7	98770097	98771097	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	-64515.0	NM_001285794	22411.0	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	13.73	9.22	4.62	16.19	17.73	12.86	47.53	53.06	26.85
Merged-chr11-77404212-1	chr11	77403712	77404712	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 4 of 14)	intron (NM_177710, intron 4 of 14)	55932.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	8.58	15.67	12.95	37.11	23.33	32.96	24.29	20.34	21.86
Merged-chr4-145201154-1	chr4	145200654	145201654	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-6149.0	NM_001276465	230895.0	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	41.76	57.6	22.2	58.03	66.71	69.13	41.19	52.18	35.6
Merged-chr1-181127297-1	chr1	181126797	181127797	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026171, intron 9 of 22)	RSINE1|SINE|B4	16907.0	NM_026171	67459.0	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	45.19	53.91	45.32	38.46	26.12	33.76	43.3	39.8	22.48
Merged-chr12-102453130-2	chr12	102452641	102453641	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-13328.0	NM_011175	19141.0	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	255.14	190.76	151.69	234.8	189.87	214.61	237.64	263.09	156.13
Merged-chr6-148443574-1	chr6	148443074	148444074	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	778.0	NM_198967	387314.0	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	17.73	9.22	9.25	8.1	4.2	4.82	14.79	9.29	6.25
Merged-chr4-14939360-1	chr4	14938860	14939860	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356579, intron 3 of 5)	intron (NM_001356579, intron 3 of 5)	8719.0	NM_001243100	100038514.0	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	5.72	4.61	1.85	2.7	2.33	7.23	2.11	2.21	4.37
Merged-chr15-100023100-1	chr15	100022600	100023600	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR4_MM-int|LTR|ERV1	-15564.0	NM_001159361	239667.0	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.43	10.6	14.8	9.45	2.33	0.8	3.17	3.1	5.0
Merged-chr2-10359943-1	chr2	10359443	10360443	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10508.0	NM_001198808	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	4.58	2.3	1.85	0.0	3.27	3.22	0.0	0.88	4.37
Merged-chr10-41393650-1	chr10	41393150	41394150	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56708.0	NM_001277229	268294.0	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	3.43	5.07	7.4	8.1	1.87	3.22	1.06	3.98	5.0
Merged-chr1-191165590-1	chr1	191165090	191166090	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001109759)	promoter-TSS (NM_001109759)	-773.0	NM_001109759	619288.0	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	1.72	2.76	0.0	4.05	0.93	1.61	7.39	2.21	4.37
Merged-chr8-54493333-1	chr8	54492833	54493833	+	561.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36665.0	NM_029701	76687.0	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	1.72	6.91	0.0	1.35	1.4	0.8	4.22	0.88	4.37
Merged-chr16-92402810-1	chr16	92402310	92403310	+	561.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-2732.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	32.04	21.2	36.07	47.9	33.59	54.66	29.57	21.67	29.35
Merged-chr2-166974205-2	chr2	166973713	166974713	+	560.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109905, intron 1 of 11)	intron (NM_001109905, intron 1 of 11)	-9496.0	NR_111895	20853.0	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	91.53	99.99	81.4	97.83	76.51	61.89	90.83	126.9	40.59
Merged-chr10-34201493-1	chr10	34200993	34201993	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172508, intron 1 of 5)	intron (NM_172508, intron 1 of 5)	6058.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	42.33	40.09	24.97	38.46	29.86	32.96	81.33	54.83	31.85
Merged-chr8-34964384-1	chr8	34963884	34964884	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175091, intron 1 of 26)	intron (NM_175091, intron 1 of 26)	1306.0	NM_175091	21951.0	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	20.59	33.64	14.8	24.96	20.53	27.33	43.3	22.99	18.74
Merged-chr6-129182725-1	chr6	129182225	129183225	+	560.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_053109, intron 1 of 4)	B3A|SINE|B2	2110.0	NM_053109	93694.0	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	98.39	104.14	90.65	60.05	67.64	81.18	110.9	121.15	51.84
Merged-chr6-86871979-1	chr6	86871479	86872479	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040106, intron 1 of 20)	intron (NM_001040106, intron 1 of 20)	22462.0	NM_001040106	269774.0	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	9.15	2.3	7.4	3.37	2.33	4.02	10.56	7.96	3.75
Merged-chr10-128441916-1	chr10	128441416	128442416	+	560.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_104288)	TTS (NR_104288)	-16764.0	NR_106183	102465894.0		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	5.72	3.69	2.77	4.72	6.53	1.61	2.11	2.21	6.25
Merged-chr7-29125194-1	chr7	29124694	29125694	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009109)	promoter-TSS (NM_009109)	-43.0	NM_009109	20190.0	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	2.86	0.92	1.85	2.7	0.47	10.45	3.17	0.0	2.5
Merged-chr2-83682831-1	chr2	83682331	83683331	+	560.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38253.0	NM_026934	69082.0	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	2.86	0.92	1.85	2.7	4.67	0.8	14.79	13.27	3.75
Merged-chr2-128393051-2	chr2	128392564	128393564	+	560.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	36287.0	NR_028591	100043424.0	Mm.297222	NR_028589		Gm14005	-	predicted gene 14005	ncRNA	357.53	365.4	144.29	375.14	407.73	236.31	374.95	508.49	181.11
Merged-chr10-34231905-1	chr10	34231405	34232405	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24354.0	NM_172508	212898.0	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	14.3	4.15	0.0	5.4	1.87	0.0	4.22	2.65	5.0
Merged-chr8-108576942-1	chr8	108576442	108577442	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_077224, intron 1 of 1)	GA-rich|Low_complexity|Low_complexity	7735.0	NR_077224	109215.0	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.86	4.15	5.55	4.05	4.2	3.22	8.45	5.31	6.25
Merged-chr16-38701532-1	chr16	38701032	38702032	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	11503.0	NM_020260	12549.0	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	8.01	4.61	3.7	8.1	5.13	6.43	12.67	8.84	5.62
Merged-chr8-46763693-1	chr8	46763193	46764193	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152560, intron 1 of 7)	intron (NR_152560, intron 1 of 7)	23948.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	31.46	33.64	37.0	22.94	27.52	39.39	41.19	23.88	28.1
Merged-chr2-26325954-1	chr2	26325454	26326454	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355575, intron 7 of 13)	intron (NM_001355575, intron 7 of 13)	6184.0	NM_001199147	67839.0	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	4.58	1.38	3.7	4.72	0.93	0.0	0.0	0.0	0.0
Merged-chr19-46321890-1	chr19	46321390	46322390	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347454, intron 6 of 17)	intron (NM_001347454, intron 6 of 17)	4976.0	NM_001347454	73728.0	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	2.29	0.92	3.7	2.02	0.93	3.22	9.51	0.88	3.75
Merged-chr2-155274871-1	chr2	155274371	155275371	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1493.0	NM_025735	66734.0	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	8.58	9.68	7.4	5.4	3.27	4.82	9.51	4.42	9.37
Merged-chr8-104395151-1	chr8	104394651	104395651	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	CpG	656.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	38.33	28.57	29.6	22.94	21.46	39.39	23.24	9.73	20.61
Merged-chr2-38436137-1	chr2	38435637	38436637	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MER77B|LTR|ERVL	-75560.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	9.15	5.53	0.0	2.7	1.87	3.22	1.06	2.65	2.5
Merged-chr8-124033441-1	chr8	124032941	124033941	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029876, intron 3 of 8)	intron (NM_001029876, intron 3 of 8)	9968.0	NM_001029876	382038.0	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	3.43	1.84	0.92	6.07	0.93	3.22	0.0	1.33	0.0
Merged-chr6-88384829-1	chr6	88384329	88385329	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023060, intron 1 of 6)	intron (NM_023060, intron 1 of 6)	61710.0	NM_023060	65967.0	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|mSelB|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	12.01	14.75	22.2	27.66	19.59	18.49	8.45	15.48	11.24
Merged-chr10-21623907-1	chr10	21623407	21624407	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30762.0	NR_027968	67692.0	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	8.58	6.45	0.0	6.07	11.2	18.49	10.56	6.63	16.86
Merged-chr6-51016647-2	chr6	51016139	51017139	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	240524.0	NR_045984	319981.0	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	7.44	1.38	7.4	4.05	1.4	4.02	6.34	2.21	7.49
Merged-chr9-115711112-1	chr9	115710612	115711612	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-198343.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	5.15	2.3	3.7	2.7	1.4	0.0	3.17	0.44	3.75
Merged-chr17-17839538-1	chr17	17839038	17840038	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001162909)	TTS (NM_001162909)	8563.0	NM_001162909	75202.0	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	13.73	19.35	12.02	18.89	7.93	9.65	11.62	11.94	6.25
Merged-chr9-89211421-1	chr9	89210921	89211921	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359993)	promoter-TSS (NM_001359993)	37.0	NM_001359993	107885.0	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	34.32	45.62	7.4	39.81	41.05	5.63	54.92	46.87	5.0
Merged-chr11-18059882-1	chr11	18059382	18060382	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR11A|LTR|ERVK	-36104.0	NR_131129	327872.0		NR_131129	ENSMUSG00000085453	Gm12018	-	predicted gene 12018	ncRNA	4.0	1.38	5.55	5.4	2.8	0.0	7.39	6.63	14.99
Merged-chr19-41380739-1	chr19	41380239	41381239	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 1 of 16)	L1MC4|LINE|L1	4331.0	NM_031376	83490.0	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	100.68	123.49	86.02	93.11	72.31	102.88	146.81	125.13	79.94
Merged-chr7-74693264-1	chr7	74692764	74693764	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR50|LTR|ERVL	-138484.0	NM_001038643	108116.0	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	6.29	8.29	3.7	8.1	4.2	4.82	12.67	6.63	14.36
Merged-chr11-107639827-1	chr11	107639327	107640327	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198298, intron 20 of 31)	Lx9|LINE|L1	2105.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	8.01	8.75	6.47	20.24	8.4	12.86	8.45	5.31	5.62
Merged-chr13-56575834-1	chr13	56575334	56576334	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-27296.0	NM_010702	16841.0	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	6.86	3.23	0.0	4.72	1.4	1.61	8.45	1.77	1.87
Merged-chr2-129410507-1	chr2	129410007	129411007	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39368.0	NM_008361	16176.0	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	6.29	2.76	0.0	5.4	1.4	8.84	4.22	0.88	1.87
Merged-chr19-10520591-3	chr19	10520078	10521078	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_025333, intron 1 of 3)	B2_Mm2|SINE|B2	4631.0	NM_025333	66072.0	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	4.0	5.07	3.7	11.47	3.73	1.61	2.11	1.77	6.25
Merged-chr19-34421114-1	chr19	34420614	34421614	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRb|SINE|MIR	54021.0	NM_009890	12642.0	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	11.44	5.07	5.55	13.49	7.46	3.22	17.96	15.48	7.49
Merged-chr11-31735566-1	chr11	31735066	31736066	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63704.0	NM_001024919	69556.0	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	19.45	22.58	24.05	18.89	22.86	6.43	23.24	16.8	5.62
Merged-chr2-32601656-1	chr2	32601156	32602156	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025311, intron 1 of 4)	intron (NM_001025311, intron 1 of 4)	1947.0	NM_001025311	50935.0	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	1.72	0.92	1.85	3.37	2.33	5.63	7.39	2.21	6.25
Merged-chr5-142478970-1	chr5	142478470	142479470	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_172725)	TTS (NM_172725)	15039.0	NM_172725	231855.0	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.57	5.07	1.85	2.02	0.47	0.0	2.11	1.33	5.0
Merged-chr4-133680342-1	chr4	133679842	133680842	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080819, exon 20 of 20)	exon (NM_001080819, exon 20 of 20)	-7176.0	NM_001356466	230801.0	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	10.87	2.76	8.32	0.67	0.93	6.43	3.17	5.75	3.75
Merged-chr12-73953045-1	chr12	73952545	73953545	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11485.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	5.72	3.69	2.77	6.07	4.67	6.43	8.45	0.44	0.62
Merged-chr1-152292556-1	chr1	152292056	152293056	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94126.0	NM_025677	66637.0	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	8.01	0.92	0.0	12.14	10.26	1.61	6.34	6.63	8.74
Merged-chr18-4891999-1	chr18	4891499	4892499	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	79513.0	NR_045881	100038439.0	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	-	predicted gene 10556	ncRNA	2.86	3.23	5.55	4.72	5.6	4.82	6.34	2.65	3.12
Merged-chr2-71539166-1	chr2	71538666	71539666	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-1275.0	NR_002854	111970.0	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	2.29	1.38	0.92	5.4	2.33	0.8	7.39	0.88	0.0
Merged-chr12-79144397-1	chr12	79143897	79144897	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	13609.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	4.0	3.69	1.85	16.19	18.66	13.66	2.11	3.98	1.25
Merged-chr13-111797738-1	chr13	111797238	111798238	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011945, intron 1 of 19)	intron (NM_011945, intron 1 of 19)	11255.0	NM_011945	26401.0	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	80.09	61.75	61.97	118.75	85.37	78.77	141.53	113.64	70.57
Merged-chr6-31116060-1	chr6	31115560	31116560	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-52967.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	274.59	284.76	153.54	255.04	251.91	195.32	288.34	347.99	166.75
Merged-chr1-166940359-1	chr1	166939859	166940859	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	IAPLTR2_Mm|LTR|ERVK	59371.0	NR_037988	100503962.0	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	2.29	1.38	5.55	0.0	0.93	9.65	8.45	3.98	6.25
Merged-chr18-35021369-1	chr18	35020869	35021869	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-67018.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	15.45	21.66	9.25	15.52	11.2	24.92	19.01	12.38	16.24
Merged-chr1-88223294-1	chr1	88222794	88223794	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-3726.0	NM_001281466	100040766.0	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	Heatr7b1	maestro heat-like repeat family member 2A	protein-coding	16.59	9.68	24.05	15.52	24.26	40.19	42.25	16.36	33.1
Merged-chr9-36769426-1	chr9	36768926	36769926	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1848.0	NM_008408	16430.0	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	42.9	52.07	37.92	47.9	52.72	45.82	55.98	56.16	26.85
Merged-chr11-21009276-1	chr11	21008776	21009776	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-82048.0	NM_023324	67245.0	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	62.93	66.81	89.72	56.0	61.58	79.58	91.89	93.74	58.71
Merged-chr10-17431193-1	chr10	17430693	17431693	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-292035.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	3.43	3.69	7.4	8.77	1.87	0.8	2.11	2.65	1.25
Merged-chr8-111095279-1	chr8	111094779	111095779	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198308, intron 1 of 17)	intron (NM_198308, intron 1 of 17)	534.0	NM_198308	319518.0	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	48.05	49.3	57.35	52.63	38.25	42.6	81.33	34.49	21.23
Merged-chr9-60794899-1	chr9	60794399	60795399	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357408, intron 1 of 19)	CpG	457.0	NM_001357407	72565.0	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	11.44	9.68	1.85	23.62	15.86	14.47	6.34	3.98	4.37
Merged-chr5-53570901-1	chr5	53570401	53571401	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	intron (NM_001080928, intron 1 of 10)	15122.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.29	1.84	7.4	6.07	0.93	1.61	3.17	3.1	5.0
Merged-chr8-84726042-1	chr8	84725542	84726542	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081982, intron 6 of 9)	PB1D10|SINE|Alu	24585.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	10.87	13.36	18.5	12.82	8.4	16.08	11.62	11.05	6.25
Merged-chr11-98000022-1	chr11	97999522	98000522	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3849.0	NR_152188	217151.0	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	13.73	11.98	7.4	14.17	8.86	4.02	14.79	16.36	13.74
Merged-chr13-49253043-1	chr13	49252543	49253543	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1-int|LTR|ERVL-MaLR	-4337.0	NM_028340	66329.0	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	16.02	7.37	3.7	15.52	15.39	29.74	20.07	19.46	19.98
Merged-chr2-148752075-1	chr2	148751575	148752575	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177655, intron 2 of 3)	intron (NM_177655, intron 2 of 3)	1714.0	NM_177655	228756.0	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	6.29	3.23	6.47	7.42	8.86	4.02	3.17	1.77	1.25
Merged-chr18-35751550-1	chr18	35751050	35752050	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10996.0	NM_001289592	72512.0	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	34.32	35.48	31.45	45.88	30.32	28.94	24.29	35.82	18.74
Merged-chr2-12709232-1	chr2	12708732	12709732	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-214809.0	NM_008961	19212.0	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.0	1.38	0.0	4.05	5.13	0.0	5.28	0.88	7.49
Merged-chr10-94041602-1	chr10	94041102	94042102	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	5601.0	NM_053072	13998.0	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	8.01	2.76	3.7	4.05	1.87	2.41	25.35	28.74	13.12
Merged-chr3-135616900-1	chr3	135616400	135617400	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 8 of 24)	Lx7|LINE|L1	74647.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	26.31	31.79	30.52	21.59	19.59	4.82	22.18	17.24	23.73
Merged-chr15-91240477-1	chr15	91239977	91240977	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48470.0	NM_001358967	26874.0	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	1.14	2.3	3.7	1.35	2.33	3.22	4.22	5.75	5.62
Merged-chr5-123064244-1	chr5	123063744	123064744	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	YREP_Mm|Unknown|Unknown	-12031.0	NM_001039723	330189.0	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	1.72	0.46	5.55	6.07	3.73	8.04	4.22	3.54	0.0
Merged-chr6-38349163-1	chr6	38348663	38349663	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028864, intron 1 of 8)	B2_Mm1a|SINE|B2	5440.0	NM_001347122	78781.0	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	9.15	10.6	6.47	4.72	8.4	6.43	10.56	11.94	0.0
Merged-chr11-78806034-1	chr11	78805534	78806534	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-20561.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	6.29	1.38	3.7	6.07	2.33	0.8	2.11	0.44	1.87
Merged-chr7-116033917-1	chr7	116033417	116034417	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025559, intron 1 of 15)	CpG	1938.0	NR_152104	68469.0	Mm.435492	NR_152104		Sox6os	1110006G14Rik	SRY (sex determining region Y)-box 6, opposite strand	ncRNA	1.72	1.84	3.7	0.67	0.93	3.22	2.11	2.65	2.5
Merged-chr9-62244554-1	chr9	62244054	62245054	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_040769)	promoter-TSS (NR_040769)	-454.0	NR_040769	330958.0	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	2.86	4.15	3.7	2.7	1.4	3.22	3.17	1.77	3.12
Merged-chr16-93767100-2	chr16	93766604	93767604	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357118, intron 17 of 35)	intron (NM_001357118, intron 17 of 35)	27797.0	NR_151466	102633000.0	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	5.72	3.23	5.55	3.37	4.67	4.02	1.06	2.65	6.25
Merged-chr19-55774622-1	chr19	55774122	55775122	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001331146, intron 4 of 14)	intron (NM_001331146, intron 4 of 14)	32812.0	NM_001142923	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	34.9	43.77	52.72	52.63	33.12	26.53	59.15	51.29	31.23
Merged-chr19-45154625-1	chr19	45154125	45155125	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3910.0	NM_021901	21908.0	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	1.72	1.84	5.55	0.67	1.4	1.61	4.22	4.42	0.0
Merged-chr5-53572748-1	chr5	53572248	53573248	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080928, intron 1 of 10)	L1MB7|LINE|L1	16969.0	NM_001080928	19664.0	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.57	2.3	0.0	4.72	1.4	1.61	2.11	1.77	2.5
Merged-chr9-100528605-1	chr9	100528105	100529105	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010878, intron 1 of 3)	RMER6A|LTR|ERVK	17529.0	NM_010878	17973.0	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	22.31	25.34	14.8	13.49	20.53	17.68	36.97	31.84	17.49
Merged-chr17-5527488-1	chr17	5526988	5527988	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146073, intron 1 of 8)	RLTR10D2|LTR|ERVK	34888.0	NM_146073	224454.0	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	7.44	7.37	3.7	8.77	6.06	12.86	5.28	6.63	4.37
Merged-chr4-53079584-1	chr4	53079084	53080084	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_013454, exon 18 of 50)	exon (NM_013454, exon 18 of 50)	67704.0	NM_025623	66536.0	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B	protein-coding	26.89	23.5	27.75	44.53	18.66	40.99	52.81	78.26	18.11
Merged-chr18-39803674-1	chr18	39803174	39804174	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30177.0	NM_011033	18459.0	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	16.02	20.27	26.82	18.22	16.79	11.25	22.18	14.59	12.49
Merged-chr11-26354373-1	chr11	26353873	26354873	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTTTG)n|Simple_repeat|Simple_repeat	-32711.0	NM_025923	67030.0	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	4.0	0.92	4.62	5.4	3.27	1.61	3.17	6.19	6.25
Merged-chr2-157514339-1	chr2	157513839	157514839	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45739.0	NM_001291129	18111.0	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	25.74	17.05	17.57	24.29	22.39	24.92	24.29	20.34	9.99
Merged-chr5-114372235-1	chr5	114371735	114372735	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001159941, intron 2 of 6)	intron (NM_001159941, intron 2 of 6)	8270.0	NM_001159941	330171.0	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	12.01	5.99	10.17	8.77	4.67	16.08	5.28	0.88	7.49
Merged-chr8-84704558-1	chr8	84704058	84705058	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001081981)	TTS (NM_001081981)	3101.0	NM_008535	17095.0	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	12.59	10.6	11.1	12.14	0.93	16.08	6.34	1.77	1.25
Merged-chr11-87358970-2	chr11	87358482	87359482	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_177167)	promoter-TSS (NM_177167)	12.0	NM_177167	320472.0	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	8.01	2.76	1.85	5.4	2.33	8.04	6.34	2.21	3.75
Merged-chr10-43578521-1	chr10	43578021	43579021	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009846)	promoter-TSS (NM_009846)	-648.0	NM_009846	12484.0	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	4.0	0.92	3.7	7.42	3.27	4.82	2.11	3.1	2.5
Merged-chr4-149856540-1	chr4	149856040	149857040	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82273.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	4.58	0.92	5.55	4.72	8.4	1.61	3.17	2.65	0.0
Merged-chr4-156183950-1	chr4	156183450	156184450	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021604, intron 3 of 35)	intron (NM_021604, intron 3 of 35)	13538.0	NM_021604	11603.0	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	5.72	2.76	3.7	2.7	0.93	9.65	2.11	2.65	6.25
Merged-chr4-138028126-1	chr4	138027626	138028626	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355699, intron 1 of 32)	intron (NM_001355699, intron 1 of 32)	30301.0	NM_001355700	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	16.59	7.37	12.02	14.84	6.53	12.86	5.28	1.33	6.25
Merged-chr11-29715796-1	chr11	29715296	29716296	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194054, intron 3 of 8)	intron (NM_194054, intron 3 of 8)	-2767.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	16.59	18.43	10.17	12.82	16.79	17.68	17.96	16.8	14.36
Merged-chr19-32758523-1	chr19	32758023	32759023	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008960, exon 1 of 9)	exon (NM_008960, exon 1 of 9)	946.0	NM_008960	19211.0	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	133.86	216.11	99.89	136.29	127.82	99.67	204.9	177.31	96.8
Merged-chr4-149958831-1	chr4	149958331	149959331	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3825.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	1.14	2.3	3.7	2.7	2.33	4.82	9.51	0.88	8.74
Merged-chr14-60765289-1	chr14	60764789	60765789	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001310594)	TTS (NM_001310594)	-2845.0	NM_183175	239126.0	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	5.72	4.15	2.77	9.45	4.2	18.49	6.34	3.98	12.49
Merged-chr15-38248097-2	chr15	38247596	38248596	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28893.0	NM_008757	18285.0	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	10.87	5.99	3.7	3.37	1.4	3.22	8.45	1.33	8.12
Merged-chr11-121753198-1	chr11	121752698	121753698	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	50771.0	NM_144797	210029.0	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	17.16	18.43	22.2	26.99	26.12	28.13	33.8	29.63	18.74
Merged-chr7-102333861-1	chr7	102333361	102334361	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 1 of 11)	RMER6A|LTR|ERVK	66037.0	NM_009287	20866.0	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	17.16	18.43	5.55	14.17	12.6	12.06	9.51	10.61	6.25
Merged-chr14-76332368-1	chr14	76331868	76332868	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	80906.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	6.86	6.45	5.55	5.4	4.67	1.61	13.73	10.61	2.5
Merged-chr5-64865439-1	chr5	64864939	64865939	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61916.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	16.59	11.06	22.2	12.14	7.93	12.86	4.22	6.63	10.62
Merged-chr3-13866508-1	chr3	13866008	13867008	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 2 of 7)	intron (NM_001357034, intron 2 of 7)	-79797.0	NM_001163329	76897.0	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	1.72	3.23	0.0	2.02	7.93	3.22	1.06	4.42	2.5
Merged-chr3-104501823-1	chr3	104501323	104502323	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001025067, intron 1 of 17)	ORR1E|LTR|ERVL-MaLR	10095.0	NM_001025067	269473.0	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	7.44	6.45	9.25	4.72	3.73	8.04	3.17	3.1	14.99
Merged-chr12-79912492-1	chr12	79911992	79912992	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12241.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	11.44	5.99	7.4	8.77	4.67	0.0	6.34	5.31	4.37
Merged-chr4-128858438-1	chr4	128857938	128858938	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-25702.0	NM_178110	67525.0	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.0	1.84	2.77	4.05	0.0	1.61	6.34	0.0	6.87
Merged-chr14-75189612-1	chr14	75189112	75190112	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008879, intron 2 of 16)	L1MA8|LINE|L1	-52675.0	NM_019775	56373.0	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	47.48	47.92	38.85	42.51	27.52	30.54	40.14	32.72	18.74
Merged-chr11-98742797-1	chr11	98742297	98743297	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	1012.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	17.73	8.75	3.7	16.87	7.93	30.54	30.63	14.15	11.24
Merged-chr1-66861306-1	chr1	66860806	66861806	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007381, intron 1 of 10)	ORR1D2|LTR|ERVL-MaLR	2003.0	NM_007381	11363.0	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.57	5.53	3.7	17.54	14.46	10.45	29.57	24.76	2.5
Merged-chr11-120344875-1	chr11	120344375	120345375	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001313923)	TTS (NM_001313923)	2538.0	NR_105900	102465564.0		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	18.88	15.67	19.42	12.14	8.4	27.33	8.45	8.4	18.11
Merged-chr14-26644200-1	chr14	26643700	26644700	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007479, intron 1 of 5)	intron (NM_007479, intron 1 of 5)	6066.0	NM_007479	11843.0	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	24.03	25.34	12.95	29.01	28.46	29.74	27.46	20.78	22.48
Merged-chr6-88522826-1	chr6	88522326	88523326	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-4026.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	2.86	1.84	3.7	5.4	7.93	12.86	3.17	1.77	6.25
Merged-chr7-97331297-1	chr7	97330797	97331797	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1026.0	NM_001039039	622320.0	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	8.01	7.37	10.17	10.12	5.6	11.25	9.51	7.52	5.62
Merged-chr6-42612493-1	chr6	42611993	42612993	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15121.0	NM_203396	403088.0	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	2.86	3.23	1.85	1.35	4.2	2.41	0.0	0.88	3.75
Merged-chr7-90137834-1	chr7	90137334	90138334	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360867, intron 1 of 19)	L1Md_F2|LINE|L1	7621.0	NM_001252520	233489.0	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	64.07	75.11	52.72	76.24	55.98	38.58	78.16	67.21	54.33
Merged-chr12-79534402-1	chr12	79533902	79534902	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	237051.0	NM_001252562	19363.0	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	10.87	11.52	13.87	3.37	10.73	24.11	17.96	11.05	13.12
Merged-chr16-92089420-1	chr16	92088920	92089920	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_080456, intron 1 of 2)	intron (NM_080456, intron 1 of 2)	31084.0	NM_080456	121022.0	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	10.3	8.75	12.02	9.45	7.46	14.47	1.06	10.61	15.61
Merged-chr19-37176054-1	chr19	37175554	37176554	+	560.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001290826)	promoter-TSS (NM_001290826)	9.0	NM_001290826	208922.0	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	176.76	180.17	76.77	124.82	139.02	105.3	144.7	241.87	108.67
Merged-chr4-152491482-1	chr4	152490982	152491982	+	560.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355739, intron 3 of 29)	intron (NM_001355739, intron 3 of 29)	13340.0	NM_153424	260305.0	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	2.86	0.0	3.7	4.05	2.33	0.0	1.06	2.21	0.62
Merged-chr1-183508043-1	chr1	183507543	183508543	+	560.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88795.0	NM_001308052	78772.0	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	1.72	3.69	5.55	2.02	5.13	3.22	3.17	2.21	3.75
Merged-chrX-18188363-1	chrX	18187863	18188863	+	559.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	intron (NM_001310444, intron 2 of 28)	25788.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	11.44	11.06	10.17	15.52	8.4	9.65	15.84	11.05	1.87
Merged-chr7-101998676-1	chr7	101998176	101999176	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	19479.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	11.44	5.99	1.85	6.75	8.4	0.0	6.34	5.31	4.37
Merged-chr12-17717346-1	chr12	17716846	17717846	+	559.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	26537.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	18.31	24.42	22.2	22.94	20.06	43.4	38.02	31.39	28.1
Merged-chr9-115710204-2	chr9	115709714	115710714	+	559.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-199241.0	NM_028638	73748.0	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	13.73	13.36	17.57	12.14	11.2	6.43	3.17	7.52	2.5
Merged-chr5-137858547-1	chr5	137858047	137859047	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133209)	promoter-TSS (NM_133209)	-498.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	37.76	43.77	49.95	51.95	33.12	69.13	81.33	60.13	41.84
Merged-chr5-64861094-1	chr5	64860594	64861594	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57571.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	32.04	38.25	48.1	20.92	18.66	24.92	40.14	34.49	29.98
Merged-chr2-91091942-1	chr2	91091442	91092442	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4736.0	NM_011355	20375.0	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	26.89	36.86	46.25	40.48	19.59	57.07	45.42	30.95	38.1
Merged-chr19-46505813-1	chr19	46505313	46506313	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053100, intron 1 of 5)	intron (NM_053100, intron 1 of 5)	4165.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	98.39	89.85	101.74	106.61	88.17	110.92	148.92	152.55	73.69
Merged-chr12-100194359-2	chr12	100193859	100194859	+	559.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_045282)	TTS (NR_045282)	-5076.0	NM_009790	12313.0	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	1.72	0.92	2.77	8.77	0.93	1.61	1.06	0.88	3.75
Merged-chr15-55550945-3	chr15	55550442	55551442	+	559.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026759, intron 2 of 6)	intron (NM_026759, intron 2 of 6)	6370.0	NM_026759	68537.0	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	6.29	0.92	6.47	2.7	6.06	3.22	7.39	3.98	3.75
Merged-chr7-108967135-2	chr7	108966617	108967617	+	559.25	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32702.0	NM_025344	66085.0	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	5.15	1.38	0.0	4.72	2.33	3.22	7.39	0.44	1.25
Merged-chr10-120234187-1	chr10	120233687	120234687	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7127.0	NM_025431	66225.0	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	4.58	5.07	1.85	0.67	6.06	2.41	14.79	10.61	9.99
Merged-chr6-31077004-1	chr6	31076504	31077504	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13911.0	NR_029532	387223.0		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	12.01	13.82	12.02	34.41	17.26	26.53	27.46	28.3	14.99
Merged-chr10-80368008-1	chr10	80367508	80368508	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	1629.0	NR_038088	100568459.0		NR_038088	ENSMUSG00000115783	Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	2.29	1.84	0.0	0.0	1.87	0.0	0.0	0.44	2.5
Merged-chr11-75538039-1	chr11	75537539	75538539	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199284, intron 2 of 13)	intron (NM_001199284, intron 2 of 13)	5927.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	31.46	29.49	50.87	31.71	22.39	45.01	32.74	20.34	21.23
Merged-chr9-90254327-1	chr9	90253827	90254827	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	B4|SINE|B4	16442.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	86.95	70.96	69.37	68.82	47.58	57.07	62.31	80.92	46.22
Merged-chr13-62627238-1	chr13	62626738	62627738	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-3056.0	NM_173381	211378.0	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	3.43	2.3	1.85	5.4	1.87	3.22	2.11	0.88	1.25
Merged-chrX-42176376-1	chrX	42175876	42176876	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021465, intron 1 of 32)	PB1D10|SINE|Alu	25675.0	NM_021465	20843.0	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	14.3	14.28	14.8	8.1	14.46	4.02	14.79	9.73	11.24
Merged-chr18-38441817-1	chr18	38441317	38442317	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355749, intron 1 of 7)	intron (NM_001355749, intron 1 of 7)	22910.0	NM_001355749	65113.0	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	9.72	14.28	20.35	10.12	6.53	9.65	29.57	23.43	21.23
Merged-chr12-84567796-1	chr12	84567296	84568296	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4|SINE|B4	-2032.0	NM_007701	12677.0	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	1.72	3.23	7.4	3.37	3.73	1.61	2.11	3.1	0.0
Merged-chr8-90856578-1	chr8	90856078	90857078	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	27743.0	NM_177224	109151.0	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	9.72	4.61	18.5	15.52	10.26	17.68	7.39	6.19	11.87
Merged-chrX-136744877-1	chrX	136744377	136745377	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033324, intron 1 of 9)	intron (NR_033324, intron 1 of 9)	-1191.0	NM_001168228	56397.0	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.57	2.3	0.0	0.0	0.93	6.43	0.0	2.65	0.0
Merged-chr3-148727081-1	chr3	148726581	148727581	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	227554.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.15	3.69	11.1	8.1	4.2	0.8	4.22	8.4	6.25
Merged-chr5-30625114-1	chr5	30624614	30625614	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010608, exon 2 of 2)	3' UTR (NM_010608, exon 2 of 2)	-22822.0	NR_049199	100885838.0		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	4.0	2.3	0.0	3.37	7.46	0.0	3.17	1.77	2.5
Merged-chr14-46872816-1	chr14	46872316	46873316	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-10149.0	NM_028966	74480.0	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	10.3	6.45	11.1	7.42	7.46	9.65	40.14	14.59	25.61
Merged-chr16-92824754-1	chr16	92824254	92825254	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111022, intron 2 of 6)	intron (NM_001111022, intron 2 of 6)	1320.0	NM_001111021	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	151.59	176.94	69.37	191.62	175.87	110.12	186.94	191.46	87.43
Merged-chr12-51868951-1	chr12	51868451	51869451	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17C2|LTR|ERVK	-39415.0	NM_144788	207304.0	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain E3 ubiquitin protein ligase 1	protein-coding	3.43	6.45	8.32	21.59	11.66	15.27	3.17	4.42	3.75
Merged-chr13-97436087-1	chr13	97435587	97436587	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	1117.0	NR_110432	100039691.0	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	10.3	8.75	3.7	6.75	0.93	4.82	4.22	1.33	0.0
Merged-chr8-122763578-1	chr8	122763078	122764078	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_151739)	promoter-TSS (NR_151739)	-817.0	NR_151739	382036.0	Mm.132367	NR_151739		A530010L16Rik	BC032935|Gm1908|Gm45801	RIKEN cDNA A530010L16 gene	ncRNA	8.58	12.44	13.87	3.37	6.53	24.11	20.07	14.15	18.11
Merged-chr2-165779132-1	chr2	165778632	165779632	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	79041.0	NM_001252585	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	8.01	3.69	3.7	7.42	1.4	0.0	2.11	3.1	0.62
Merged-chr1-119534604-1	chr1	119534104	119535104	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_126486, intron 3 of 3)	MTD|LTR|ERVL-MaLR	1561.0	NR_126486	320069.0	Mm.406320	NR_126486	ENSMUSG00000101731	3830432H09Rik	-	RIKEN cDNA 3830432H09 gene	ncRNA	6.86	1.84	5.55	1.35	0.93	1.61	7.39	1.77	7.49
Merged-chr2-74673108-1	chr2	74672608	74673608	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1905.0	NM_008274	15432.0	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	2.29	2.3	0.0	3.37	2.8	3.22	2.11	0.88	1.25
Merged-chr13-64257167-1	chr13	64256667	64257667	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045798, intron 1 of 2)	ORR1B1|LTR|ERVL-MaLR	8467.0	NR_045798	66503.0	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	1.72	1.38	0.0	1.35	1.4	2.41	3.17	4.86	1.87
Merged-chr8-120312602-1	chr8	120312102	120313102	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-84372.0	NR_110496	434353.0	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	2.29	0.46	4.62	0.67	2.33	6.43	1.06	2.21	2.5
Merged-chr1-88600251-1	chr1	88599751	88600751	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48734.0	NR_037971	100503197.0	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	2.86	2.3	1.85	6.75	3.27	3.22	3.17	3.54	7.49
Merged-chr6-58594593-1	chr6	58594093	58595093	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355477, intron 1 of 15)	intron (NM_001355477, intron 1 of 15)	-2079.0	NM_011920	26357.0	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP binding cassette subfamily G member 2 (Junior blood group)	protein-coding	10.87	7.83	16.65	13.49	8.4	4.02	8.45	5.75	5.0
Merged-chr2-73279129-1	chr2	73278629	73279629	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7203.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	3.43	1.84	1.85	2.7	1.87	4.02	3.17	1.77	0.0
Merged-chr13-12469765-1	chr13	12469265	12470265	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8027.0	NM_001291057	56048.0	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	26.89	19.35	12.02	24.96	21.93	19.29	21.12	14.15	18.11
Merged-chr19-3706391-2	chr19	3705892	3706892	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-1901.0	NM_001358256	72056.0	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	8.58	5.07	3.7	3.37	1.4	11.25	7.39	4.86	3.75
Merged-chr19-55839261-1	chr19	55838761	55839761	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-56060.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	34.32	28.57	39.77	31.04	21.93	39.39	26.4	26.09	21.23
Merged-chr5-121398715-1	chr5	121398215	121399215	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172722, intron 1 of 23)	intron (NM_172722, intron 1 of 23)	733.0	NM_172722	231713.0	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	56.06	50.69	62.9	42.51	48.05	26.53	79.21	66.77	30.6
Merged-chr2-164047455-1	chr2	164046955	164047955	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001114079, intron 11 of 13)	intron (NM_001114079, intron 11 of 13)	22231.0	NM_001114079	381404.0	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	1.72	0.46	2.77	0.67	3.27	6.43	2.11	0.88	1.25
Merged-chr15-33183572-1	chr15	33183072	33184072	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_018755, intron 2 of 8)	MIRb|SINE|MIR	100443.0	NM_176073	54381.0	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	21.17	43.77	40.7	29.01	27.06	37.78	32.74	43.77	47.46
Merged-chr2-167978420-1	chr2	167977920	167978920	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_011201, exon 9 of 9)	3' UTR (NM_011201, exon 9 of 9)	32173.0	NM_001080708	69553.0	Mm.68454	NM_001080708	ENSMUSG00000074577	Ripor3	2310033K02Rik|Fam65c|Gm124	RIPOR family member 3	protein-coding	8.01	0.92	11.1	4.72	1.87	3.22	4.22	0.88	6.25
Merged-chr2-181239613-1	chr2	181239113	181240113	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_183162, exon 3 of 19)	exon (NM_183162, exon 3 of 19)	2414.0	NM_183162	229003.0	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	5.72	2.3	3.7	16.19	3.73	9.65	53.87	30.95	31.23
Merged-chr10-127545446-2	chr10	127545039	127546039	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_008512, exon 75 of 89)	exon (NM_008512, exon 75 of 89)	-10980.0	NM_183297	104080.0	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	5.72	1.84	2.77	7.42	0.93	1.61	3.17	1.33	1.25
Merged-chr15-87071210-1	chr15	87070710	87071710	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-473089.0	NM_001252310	106014.0	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.57	2.3	2.77	7.42	5.13	14.47	8.45	0.44	8.74
Merged-chr5-122268741-1	chr5	122268241	122269241	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4281.0	NM_001039153	654470.0	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	74.37	88.93	70.3	58.7	41.05	71.54	128.85	116.73	50.59
Merged-chr16-92865114-1	chr16	92864614	92865614	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-39040.0	NM_001111022	12394.0	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	147.02	83.4	56.42	152.49	85.84	102.88	90.83	56.16	61.2
Merged-chr14-17773062-1	chr14	17772562	17773562	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113417, intron 1 of 9)	intron (NM_001113417, intron 1 of 9)	112102.0	NM_001113417	21834.0	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	11.44	5.53	7.4	10.8	3.73	12.86	10.56	6.63	3.75
Merged-chr4-130738727-2	chr4	130738240	130739240	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356564, intron 7 of 20)	intron (NM_001356564, intron 7 of 20)	-10898.0	NR_028565	100217460.0		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	4.58	2.76	0.0	4.72	3.27	0.8	1.06	4.86	8.12
Merged-chr3-87090128-1	chr3	87089628	87090628	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170985, intron 6 of 15)	intron (NM_001170985, intron 6 of 15)	84619.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.57	4.15	0.0	2.7	1.87	0.0	2.11	1.77	3.75
Merged-chr8-120490937-1	chr8	120490437	120491437	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198671, intron 1 of 15)	intron (NM_198671, intron 1 of 15)	2071.0	NM_198671	382034.0	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	13.16	11.06	17.57	22.94	13.06	13.66	22.18	13.27	8.12
Merged-chr9-124257605-1	chr9	124257105	124258105	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	55089.0	NM_001243118	630836.0	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	12.01	8.29	12.95	21.59	8.4	12.86	21.12	11.05	6.87
Merged-chr17-50285083-1	chr17	50284583	50285583	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010021, intron 7 of 10)	intron (NM_010021, intron 7 of 10)	8537.0	NM_010021	13164.0	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	2.29	3.69	0.0	3.37	7.46	0.0	5.28	3.54	1.25
Merged-chr2-13526416-1	chr2	13525916	13526916	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010067, intron 2 of 10)	intron (NM_010067, intron 2 of 10)	18248.0	NM_010067	13434.0	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	7.44	4.61	1.85	0.67	5.13	1.61	1.06	5.31	1.87
Merged-chr17-53478264-1	chr17	53477764	53478764	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	-970.0	NM_025887	271457.0	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	51.48	100.91	79.55	55.33	63.45	79.58	80.27	149.89	87.43
Merged-chr14-70776136-1	chr14	70775636	70776636	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010071, intron 3 of 4)	intron (NM_010071, intron 3 of 4)	1755.0	NM_010071	13449.0	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip|dok-R	docking protein 2	protein-coding	38.33	55.75	63.82	37.11	37.32	68.32	51.75	37.58	48.71
Merged-chr16-15954564-1	chr16	15954064	15955064	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	67278.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	14.3	12.44	20.35	10.12	12.13	20.09	8.45	8.4	11.87
Merged-chr4-26248387-1	chr4	26247887	26248887	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5c|LINE|L1	98265.0	NM_172865	242362.0	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	1.14	1.84	3.7	3.37	1.4	0.0	1.06	2.21	3.12
Merged-chr6-129682939-1	chr6	129682439	129683439	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR12BD_Mm|LTR|ERVK	-3966.0	NM_010652	16641.0	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	22.31	29.03	11.1	18.89	14.46	13.66	13.73	25.2	28.73
Merged-chrX-57304278-1	chrX	57303778	57304778	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358573, intron 2 of 20)	intron (NM_001358573, intron 2 of 20)	22323.0	NM_001358573	73341.0	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	35.47	54.83	22.2	41.83	27.52	20.9	23.24	30.51	37.47
Merged-chr1-119929952-1	chr1	119929452	119930452	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001115074, intron 20 of 22)	intron (NM_001115074, intron 20 of 22)	-16784.0	NM_175106	66343.0	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.0	2.3	3.7	2.02	0.93	3.22	0.0	1.33	3.75
Merged-chr17-35269995-1	chr17	35269495	35270495	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER21A|LTR|ERV1	6872.0	NM_001267808	14980.0	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	22.31	10.6	13.87	7.42	1.87	6.43	15.84	11.94	8.12
Merged-chr1-57983610-1	chr1	57983110	57984110	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx6|LINE|L1	-1730.0	NM_001177867	68549.0	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	3.43	1.84	0.0	4.05	3.27	1.61	4.22	0.88	3.12
Merged-chrX-142682545-1	chrX	142682045	142683045	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	non-coding (NR_152447, exon 2 of 9)	non-coding (NR_152447, exon 2 of 9)	819.0	NM_001199360	209497.0	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	109.26	140.08	99.89	129.55	124.56	106.9	151.03	144.15	85.56
Merged-chr12-73965143-1	chr12	73964643	73965643	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178392, intron 1 of 9)	intron (NM_178392, intron 1 of 9)	613.0	NM_178392	75627.0	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	120.13	144.23	60.12	84.34	99.83	92.44	124.63	116.29	94.93
Merged-chr7-93093933-1	chr7	93093433	93094433	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14054.0	NM_021427	58238.0	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	5.15	0.92	5.55	4.05	3.27	1.61	4.22	1.33	1.25
Merged-chr15-35464701-1	chr15	35464201	35465201	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177151, intron 16 of 61)	ORR1D2|LTR|ERVL-MaLR	93155.0	NM_177151	666173.0	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	1.72	5.53	1.85	8.1	3.27	7.23	3.17	2.65	5.0
Merged-chr11-96124394-1	chr11	96123894	96124894	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-9392.0	NM_172799	237930.0	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	2.86	3.69	0.0	0.67	2.33	9.65	0.0	1.33	1.25
Merged-chr10-43478705-1	chr10	43478205	43479205	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_199028)	promoter-TSS (NM_199028)	-435.0	NM_199028	331623.0	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	82.38	45.62	42.55	117.4	91.9	75.56	123.57	75.61	44.97
Merged-chr1-136573677-1	chr1	136573177	136574177	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51224.0	NM_177643	226442.0	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	21.17	12.44	27.75	12.82	8.86	6.43	34.85	26.09	21.23
Merged-chr3-115799766-1	chr3	115799266	115800266	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	URR1A|DNA|hAT-Charlie	-84711.0	NM_007901	13609.0	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	5.72	5.99	5.55	4.72	6.06	1.61	8.45	3.1	3.75
Merged-chr7-104287905-1	chr7	104287405	104288405	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001310602, intron 1 of 7)	intron (NM_001310602, intron 1 of 7)	201.0	NM_001310602	667823.0	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	1.14	0.0	0.0	0.0	0.0	0.0	165.82	229.04	89.93
Merged-chr15-64174691-2	chr15	64174190	64175190	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001276461, intron 5 of 28)	intron (NM_001276461, intron 5 of 28)	-114242.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	2.29	3.69	2.77	6.07	3.27	9.65	4.22	1.77	3.12
Merged-chr11-6393024-1	chr11	6392524	6393524	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MD1|LINE|L1	-2101.0	NM_001005867	52915.0	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	14.3	11.06	4.62	14.17	5.13	11.25	2.11	4.42	6.87
Merged-chrX-71311435-1	chrX	71310935	71311935	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358113, intron 15 of 15)	intron (NM_001358113, intron 15 of 15)	-53325.0	NM_001313702	53332.0	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	2.86	2.76	1.85	3.37	0.93	3.22	2.11	0.44	1.25
Merged-chr4-103122800-1	chr4	103122300	103123300	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039081, intron 1 of 12)	intron (NM_001039081, intron 1 of 12)	3410.0	NM_001039081	71148.0	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	55.49	73.26	67.52	49.25	29.39	45.82	82.38	76.49	40.59
Merged-chr8-46140072-1	chr8	46139572	46140572	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15926.0	NM_207213	102141.0	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	117.27	154.82	106.37	137.64	114.29	114.94	178.5	169.35	87.43
Merged-chrX-152002565-1	chrX	152002065	152003065	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016763, intron 2 of 5)	RSINE1|SINE|B4	669.0	NM_016763	15108.0	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	16.02	13.36	10.17	33.74	27.99	9.65	10.56	20.78	7.49
Merged-chrX-170674777-1	chrX	170674277	170675277	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001308488, intron 3 of 7)	CpG-16010	2133.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	17.16	9.22	22.2	20.92	8.86	28.94	11.62	20.78	12.49
Merged-chr16-22123858-1	chr16	22123358	22124358	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 2 of 15)	intron (NM_183029, intron 2 of 15)	39441.0	NM_183029	319765.0	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	14.87	16.13	5.55	15.52	8.86	0.0	20.07	9.73	3.75
Merged-chr7-100009836-1	chr7	100009336	100010336	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001291320)	promoter-TSS (NM_001291320)	-82.0	NM_001291320	69121.0	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	1.14	4.15	9.25	4.05	0.93	0.0	4.22	2.21	2.5
Merged-chr6-126955911-1	chr6	126955411	126956411	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_138594, exon 9 of 14)	exon (NM_138594, exon 9 of 14)	15945.0	NM_138594	28040.0	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	7.44	1.38	4.62	3.37	2.8	0.0	5.28	2.65	1.87
Merged-chr7-100862017-1	chr7	100861517	100862517	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177073, intron 1 of 10)	intron (NM_177073, intron 1 of 10)	1396.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	26.89	19.81	7.4	21.59	2.33	18.49	33.8	13.71	6.25
Merged-chr17-56077684-1	chr17	56077184	56078184	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_024432, intron 1 of 11)	B2_Mm1t|SINE|B2	1649.0	NM_024432	66530.0	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	6.86	7.37	7.4	2.02	10.26	8.84	25.35	18.57	10.62
Merged-chr13-76199203-1	chr13	76198703	76199703	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER20B|LTR|ERVK	100469.0	NM_001081352	218343.0	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	1.72	4.61	1.85	2.02	5.6	0.0	0.0	0.0	1.25
Merged-chr7-16922896-1	chr7	16922396	16923396	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007590, intron 1 of 5)	intron (NM_007590, intron 1 of 5)	1136.0	NM_007590	12315.0	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|Cam3|Camc|R75142	calmodulin 3	protein-coding	3.43	5.07	5.55	7.42	1.4	6.43	10.56	6.19	1.87
Merged-chr1-96872052-1	chr1	96871552	96872552	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172658, exon 1 of 13)	exon (NM_172658, exon 1 of 13)	119.0	NM_172658	227394.0	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	3.43	2.76	0.0	2.02	0.47	1.61	3.17	0.0	3.12
Merged-chr2-143903689-1	chr2	143903189	143904189	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11642.0	NM_019771	56431.0	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	13.16	2.3	1.85	7.42	4.2	3.22	5.28	3.54	8.74
Merged-chr14-30589872-1	chr14	30589372	30590372	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17723.0	NR_037237	100526475.0		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	9.15	1.84	5.55	1.35	2.8	3.22	14.79	5.75	23.11
Merged-chr1-75425894-1	chr1	75425394	75426394	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001085370, intron 29 of 38)	intron (NM_001085370, intron 29 of 38)	-10042.0	NM_133708	69080.0	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.57	3.69	0.0	2.7	0.47	1.61	2.11	1.33	1.25
Merged-chr11-64063012-1	chr11	64062512	64063512	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178379, intron 3 of 6)	intron (NM_178379, intron 3 of 6)	16460.0	NM_178379	70383.0	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	8.01	3.69	1.85	2.7	1.4	0.0	2.11	3.1	1.87
Merged-chr16-70868456-1	chr16	70867956	70868956	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	252031.0	NR_040474	52645.0	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.0	2.76	4.62	4.05	6.53	3.22	3.17	0.88	5.0
Merged-chr11-88869650-1	chr11	88869150	88870150	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-5064.0	NM_001042541	11640.0	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	1.72	3.69	3.7	2.02	2.33	1.61	4.22	1.77	5.0
Merged-chr5-44284580-1	chr5	44284080	44285080	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57974.0	NM_173764	231225.0	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	5.72	0.92	0.0	3.37	2.33	3.22	0.0	3.54	1.25
Merged-chr4-33124666-1	chr4	33124166	33125166	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-7890.0	NM_008075	14408.0	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	1.72	2.3	0.0	0.0	3.27	3.22	2.11	1.33	2.5
Merged-chr9-63844305-1	chr9	63843805	63844805	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-86311.0	NM_016769	17127.0	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	2.86	2.3	0.0	2.02	3.73	3.22	1.06	3.1	2.5
Merged-chr16-15984322-1	chr16	15983822	15984822	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97036.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.44	17.51	9.25	11.47	8.4	10.45	6.34	11.5	10.62
Merged-chr2-25694829-1	chr2	25694329	25695329	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_153558	227627.0	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	4.58	4.15	3.7	0.67	2.8	0.0	1.06	1.33	0.0
Merged-chr2-68860589-1	chr2	68860089	68861089	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172856)	promoter-TSS (NM_172856)	-852.0	NM_172856	241447.0	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	48.62	31.33	37.92	47.23	26.12	49.03	32.74	48.2	35.6
Merged-chr2-72038407-1	chr2	72037907	72038907	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001204167, intron 3 of 5)	intron (NM_001204167, intron 3 of 5)	-16210.0	NM_001355478	56508.0	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	2.86	0.92	3.7	0.67	0.0	0.8	1.06	0.44	0.0
Merged-chr19-47142664-1	chr19	47142164	47143164	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081271, intron 1 of 1)	MER102b|DNA|hAT-Charlie	1510.0	NM_001081271	546729.0	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	8.01	1.38	0.0	1.35	1.4	6.43	19.01	16.36	5.62
Merged-chr12-79133123-1	chr12	79132623	79133623	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009705, intron 2 of 7)	intron (NM_009705, intron 2 of 7)	2335.0	NM_009705	11847.0	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	22.31	18.89	4.62	77.59	56.91	40.99	19.01	9.29	7.49
Merged-chr6-122739645-1	chr6	122739145	122740145	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011401, intron 3 of 9)	intron (NM_011401, intron 3 of 9)	3100.0	NM_011401	20527.0	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	5.72	2.76	2.77	5.4	3.27	3.22	2.11	4.86	0.0
Merged-chr4-59267491-1	chr4	59266991	59267991	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_105031, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	7440.0	NR_105031	101055769.0	Mm.421401	NR_105031		Gm12596	-	predicted gene 12596	ncRNA	2.86	6.45	1.85	6.07	5.13	6.43	8.45	6.19	5.0
Merged-chr11-119503874-1	chr11	119503374	119504374	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164636, intron 7 of 8)	intron (NM_001164636, intron 7 of 8)	12254.0	NM_177394	338371.0	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	3.43	1.84	1.85	1.35	1.4	1.61	1.06	0.0	0.0
Merged-chr19-47089835-1	chr19	47089335	47090335	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011053)	promoter-TSS (NM_011053)	790.0	NM_023211	66477.0	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	94.96	100.45	61.05	96.48	114.29	66.71	80.27	127.34	30.6
Merged-chr5-21379057-2	chr5	21378568	21379568	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008013)	TTS (NM_008013)	6395.0	NM_008013	14190.0	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	21.17	12.9	15.72	8.77	7.0	9.65	23.24	11.94	8.12
Merged-chr4-53355187-1	chr4	53354687	53355687	+	559.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-84955.0	NR_033139	381524.0	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	20.02	9.22	3.7	15.52	11.66	3.22	9.51	8.4	5.0
Merged-chr8-105564054-1	chr8	105563554	105564554	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013477, intron 1 of 7)	intron (NM_013477, intron 1 of 7)	2010.0	NM_013477	11972.0	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	37.18	28.11	35.15	26.31	18.66	17.68	32.74	29.63	19.98
Merged-chr4-59497990-1	chr4	59497490	59498490	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144904, intron 6 of 14)	ORR1D1-int|LTR|ERVL-MaLR	51374.0	NM_178164	230257.0	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	5.72	6.45	9.25	8.77	4.2	12.86	2.11	6.63	8.74
Merged-chr7-99095384-1	chr7	99094884	99095884	+	559.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 4 of 14)	B3|SINE|B2	45760.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	4.58	6.45	7.4	5.4	1.87	6.43	6.34	3.1	5.0
Merged-chr1-166169240-1	chr1	166168740	166169740	+	559.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	39019.0	NM_001360925	59290.0	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197|mA33	glycoprotein A33 (transmembrane)	protein-coding	17.16	33.18	11.1	37.78	39.19	14.47	27.46	28.3	7.49
Merged-chr11-109244772-2	chr11	109244255	109245255	+	558.666626	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165934, intron 13 of 16)	intron (NM_001165934, intron 13 of 16)	53426.0	NM_001165934	19739.0	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	5.15	4.15	1.85	4.05	2.33	1.61	4.22	0.44	1.25
Merged-chr4-41714401-1	chr4	41713901	41714901	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027278)	promoter-TSS (NM_027278)	-884.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	14.87	7.83	7.4	13.49	6.53	10.45	9.51	5.75	1.87
Merged-chr8-8483137-1	chr8	8482637	8483637	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	177636.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	6.29	0.46	1.85	5.4	7.93	6.43	6.34	2.65	0.0
Merged-chr5-139466507-1	chr5	139466007	139467007	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1B1|LTR|ERVL-MaLR	-5973.0	NM_028469	73212.0	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	19.45	22.58	10.17	24.29	14.46	32.96	8.45	17.24	23.73
Merged-chr7-27332433-1	chr7	27331933	27332933	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175641, intron 4 of 32)	intron (NM_175641, intron 4 of 32)	1215.0	NM_001113549	108075.0	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	6.29	2.76	3.7	6.07	4.2	4.82	7.39	6.19	0.62
Merged-chr13-21715711-2	chr13	21715218	21716218	+	558.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_178182)	promoter-TSS (NM_178182)	425.0	NM_178199	319185.0		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	64.07	90.31	62.9	65.45	49.92	57.87	69.71	97.28	61.83
Merged-chr17-45548849-2	chr17	45548366	45549366	+	558.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013749, intron 1 of 2)	intron (NM_001013749, intron 1 of 2)	811.0	NM_001013749	210573.0	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.0	2.3	7.4	1.35	3.27	3.22	2.11	3.54	5.62
Merged-chr15-74897824-1	chr15	74897324	74898324	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16120.0	NM_025929	67038.0	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	4.58	4.61	9.25	0.0	1.4	1.61	10.56	9.29	17.49
Merged-chr11-117331764-2	chr11	117331222	117332222	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001113488)	promoter-TSS (NM_001113488)	7.0	NM_017380	53860.0	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	40.04	20.74	37.0	22.27	18.66	40.19	24.29	15.03	22.48
Merged-chr19-41291276-1	chr19	41290776	41291776	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031376, intron 13 of 16)	L2|LINE|L2	-27272.0	NM_133352	107358.0	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	7.44	5.07	5.55	4.05	5.6	1.61	6.34	6.19	1.25
Merged-chr16-85281883-1	chr16	85281383	85282383	+	558.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-108176.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.72	4.15	3.7	2.7	3.27	0.0	3.17	1.77	8.74
Merged-chr10-21159893-1	chr10	21159393	21160393	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198914, intron 1 of 15)	CpG	1091.0	NM_001198914	17863.0	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	4.0	2.76	5.55	0.67	1.87	0.0	5.28	1.77	6.25
Merged-chr4-108519023-2	chr4	108518519	108519519	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175472, intron 15 of 30)	ORR1F|LTR|ERVL-MaLR	59593.0	NM_175472	230594.0	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	15.45	18.89	9.25	6.07	5.13	10.45	13.73	8.84	8.12
Merged-chr9-45264389-1	chr9	45263889	45264889	+	558.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008348, exon 5 of 7)	exon (NM_008348, exon 5 of 7)	2318.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	37.18	24.42	44.4	33.06	28.46	54.66	46.47	25.65	31.85
Merged-chr11-77802282-1	chr11	77801782	77802782	+	558.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291214, intron 1 of 38)	intron (NM_001291214, intron 1 of 38)	984.0	NM_001291215	360013.0	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	50.91	56.22	67.52	84.34	80.71	108.51	96.11	82.69	68.7
Merged-chr2-155765188-1	chr2	155764688	155765688	+	558.200012	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-10154.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	34.32	23.5	18.5	26.31	15.86	31.35	46.47	22.11	23.11
Merged-chr1-151011152-1	chr1	151010652	151011652	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17717.0	NM_001024720	545370.0	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	7.44	0.92	3.7	6.07	2.8	4.82	1.06	3.54	3.75
Merged-chr2-145858625-1	chr2	145858125	145859125	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028724, intron 8 of 12)	intron (NM_028724, intron 8 of 12)	-44616.0	NM_026425	67877.0	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	19.45	14.28	40.7	26.31	10.73	25.72	14.79	7.96	16.24
Merged-chr8-120078304-1	chr8	120077804	120078804	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23168.0	NM_133967	102193.0	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	1.72	3.23	0.0	0.67	1.87	1.61	2.11	0.0	1.25
Merged-chr11-99150116-1	chr11	99149616	99150616	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007719, intron 1 of 2)	intron (NM_007719, intron 1 of 2)	4961.0	NM_001301713	12775.0	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	2.86	3.23	6.47	9.45	0.93	3.22	5.28	0.44	1.25
Merged-chr4-119292650-1	chr4	119292150	119293150	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011732, intron 2 of 7)	intron (NM_011732, intron 2 of 7)	1863.0	NM_011732	22608.0	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	191.07	220.72	104.52	149.11	146.95	148.7	138.36	156.53	74.94
Merged-chr7-113186624-1	chr7	113186124	113187124	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20841.0	NM_001243048	11865.0	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	8.01	9.22	5.55	12.82	13.06	11.25	12.67	7.52	8.74
Merged-chr10-20348608-1	chr10	20348108	20349108	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027930, intron 2 of 6)	intron (NM_027930, intron 2 of 6)	789.0	NM_027930	71804.0	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	28.03	22.58	11.1	31.04	21.46	20.9	74.99	83.57	33.1
Merged-chr9-109908315-1	chr9	109907815	109908815	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18672.0	NR_106057	102465660.0		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	1.72	0.92	2.77	1.35	3.27	4.02	2.11	0.88	3.75
Merged-chr14-45566715-2	chr14	45566236	45567236	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	23026.0	NR_045809	67651.0	Mm.55930	NR_045809	ENSMUSG00000115324	4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	2.29	2.76	1.85	4.05	1.4	0.0	1.06	3.54	2.5
Merged-chr10-96625320-1	chr10	96624820	96625820	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8319.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	10.3	1.84	6.47	4.05	4.2	9.65	5.28	2.21	1.25
Merged-chrX-142966068-1	chrX	142965568	142966568	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019496, intron 1 of 5)	CpG	660.0	NM_019496	56068.0	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	22.88	8.29	4.62	20.92	4.67	13.66	29.57	7.96	5.0
Merged-chr1-106717392-2	chr1	106716889	106717889	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3099.0	NM_177410	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	2.86	2.3	1.85	2.02	4.2	1.61	4.22	0.88	2.5
Merged-chr5-64919011-1	chr5	64918511	64919511	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13688.0	NM_030682	21897.0	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	17.73	16.59	35.15	16.87	19.13	21.7	26.4	13.27	18.11
Merged-chr2-137577361-1	chr2	137576861	137577861	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-460841.0	NM_013822	16449.0	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.57	6.91	0.0	4.05	8.86	4.82	5.28	2.65	3.75
Merged-chr4-9844218-1	chr4	9843718	9844718	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_013526)	promoter-TSS (NM_013526)	-154.0	NM_013526	242316.0	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	4.58	0.92	11.1	3.37	0.0	4.02	0.0	0.44	1.87
Merged-chr11-118157977-1	chr11	118157477	118158477	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28758.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	20.02	32.25	18.5	68.82	45.25	57.87	44.36	35.82	45.59
Merged-chr9-64018188-1	chr9	64017688	64018688	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008542, intron 1 of 3)	intron (NM_008542, intron 1 of 3)	3871.0	NM_008542	17130.0	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	20.59	13.36	22.2	21.59	7.0	27.33	34.85	20.78	16.86
Merged-chr11-107471431-1	chr11	107470931	107471931	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_145823)	promoter-TSS (NM_145823)	-711.0	NM_145823	71795.0	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|mrdgBbeta|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	53.77	77.41	72.15	64.1	56.91	58.68	92.94	96.83	46.84
Merged-chr1-171270882-1	chr1	171270382	171271382	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020579, intron 1 of 7)	intron (NM_020579, intron 1 of 7)	554.0	NM_020579	57370.0	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	127.0	109.67	71.22	96.48	81.64	57.87	64.43	65.0	43.09
Merged-chr12-69752124-1	chr12	69751624	69752624	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183294, intron 7 of 9)	intron (NM_183294, intron 7 of 9)	11820.0	NR_030450	751538.0		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	3.43	11.52	5.55	10.8	11.2	8.84	10.56	7.52	3.75
Merged-chr6-30468772-2	chr6	30468276	30469276	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	7791.0	NR_131049	69337.0	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	6.86	2.76	9.25	9.45	3.27	17.68	7.39	3.54	5.0
Merged-chr10-45045508-1	chr10	45045008	45046008	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21706.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.29	1.84	5.55	6.07	1.4	1.61	2.11	2.65	6.25
Merged-chr17-10572691-1	chr17	10572191	10573191	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	116475.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	4.58	5.07	3.7	2.02	4.2	1.61	4.22	2.65	0.0
Merged-chr17-71597330-1	chr17	71596830	71597830	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027953, intron 1 of 2)	RMER15|LTR|ERVL	951.0	NR_027953	68789.0	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	20.02	16.59	2.77	20.92	9.8	12.06	14.79	8.84	2.5
Merged-chr16-52097016-1	chr16	52096516	52097516	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 3 of 17)	Lx3C|LINE|L1	65467.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	2.29	1.84	5.55	1.35	3.73	3.22	6.34	1.77	9.99
Merged-chr18-56720031-1	chr18	56719531	56720531	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010721, intron 1 of 10)	intron (NM_010721, intron 1 of 10)	12218.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	5.15	2.76	5.55	8.1	9.8	9.65	17.96	19.01	9.99
Merged-chr12-83487269-1	chr12	83486769	83487769	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_058212, intron 1 of 8)	CpG	467.0	NM_001267626	70127.0	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	2.86	1.84	4.62	2.7	4.67	1.61	7.39	3.1	3.75
Merged-chr11-55389929-1	chr11	55389429	55390429	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30151.0	NM_009242	20692.0	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.57	1.38	1.85	2.02	1.4	1.61	3.17	0.44	3.12
Merged-chr6-135355665-1	chr6	135355165	135356165	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7266.0	NM_010128	13730.0	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	4.58	0.46	3.7	1.35	3.73	3.22	2.11	1.33	6.25
Merged-chr3-97932925-1	chr3	97932425	97933425	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033779, intron 1 of 1)	intron (NM_001033779, intron 1 of 1)	2752.0	NM_001033779	433632.0	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	101.83	70.96	68.45	99.86	69.98	62.7	116.18	97.28	38.1
Merged-chr4-144906060-1	chr4	144905560	144906560	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	12923.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	32.04	46.08	48.1	43.18	75.57	65.91	51.75	48.64	35.6
Merged-chr6-5092153-1	chr6	5091653	5092653	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181595, intron 6 of 15)	intron (NM_181595, intron 6 of 15)	101793.0	NM_011134	18979.0	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	20.59	31.79	34.22	21.59	15.86	35.37	31.69	30.95	23.73
Merged-chr9-54474296-1	chr9	54473796	54474796	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172771, intron 3 of 43)	intron (NM_172771, intron 3 of 43)	27330.0	NM_172771	235380.0	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	5.15	3.23	1.85	2.7	3.27	2.41	1.06	0.88	5.0
Merged-chr7-75372174-1	chr7	75371674	75372674	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62912.0	NM_153579	64176.0	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	5.72	1.84	0.0	6.07	3.27	3.22	4.22	3.1	3.75
Merged-chr4-150388777-1	chr4	150388277	150389277	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	106861.0	NM_001085492	68703.0	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	5.15	3.69	3.7	7.42	2.33	4.02	2.11	3.98	1.87
Merged-chr8-8983342-1	chr8	8982842	8983842	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	148946.0	NR_045854	71249.0	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	6.29	1.84	0.92	2.02	3.27	6.43	2.11	3.98	3.12
Merged-chr16-29850784-1	chr16	29850284	29851284	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	128340.0	NR_037689	328657.0	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	6.86	5.53	4.62	6.07	3.73	1.61	9.51	3.54	3.12
Merged-chr17-70705139-1	chr17	70704639	70705639	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360665, intron 9 of 14)	intron (NM_001360665, intron 9 of 14)	141638.0	NM_001164077	21815.0	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	2.29	3.69	3.7	4.05	4.2	3.22	1.06	1.77	4.37
Merged-chr5-113007206-1	chr5	113006706	113007706	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285806, intron 1 of 20)	intron (NM_001285806, intron 1 of 20)	8332.0	NM_001285806	320129.0	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	20.02	18.43	27.75	18.89	8.86	22.51	10.56	4.86	7.49
Merged-chr9-79806850-1	chr9	79806350	79807350	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	13209.0	NR_040734	74633.0	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.0	2.3	0.0	2.7	1.87	0.0	3.17	0.44	3.75
Merged-chr10-91210787-1	chr10	91210287	91211287	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151510, intron 3 of 3)	T-rich|Low_complexity|Low_complexity	9832.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	21.17	17.05	24.97	18.22	19.13	20.9	23.24	16.36	18.74
Merged-chr13-117284241-1	chr13	117283741	117284741	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63668.0	NM_010330	13723.0	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.57	1.84	0.92	0.0	7.93	1.61	5.28	3.98	3.75
Merged-chr8-46921323-1	chr8	46920823	46921823	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-65564.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	8.01	7.37	14.8	15.52	7.93	8.04	7.39	2.65	9.99
Merged-chr5-122970226-1	chr5	122969726	122970726	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003953, intron 4 of 22)	intron (NM_001003953, intron 4 of 22)	18873.0	NM_001003953	30841.0	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	10.3	5.07	3.7	12.14	4.67	0.0	1.06	2.65	2.5
Merged-chr7-19210873-2	chr7	19210366	19211366	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-1672.0	NM_175668	319197.0	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	6.86	8.75	1.85	2.02	4.2	1.61	4.22	3.98	5.0
Merged-chr9-53676312-1	chr9	53675812	53676812	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-8805.0	NM_027807	75717.0	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	5.72	13.36	13.87	8.1	8.86	12.06	13.73	10.61	6.87
Merged-chr19-55921619-1	chr19	55921119	55922119	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142920, intron 11 of 11)	intron (NM_001142920, intron 11 of 11)	26298.0	NM_001142924	21416.0	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	5.15	3.69	7.4	2.02	3.73	1.61	3.17	0.44	0.0
Merged-chr2-35441696-1	chr2	35441196	35442196	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010283, intron 1 of 8)	intron (NM_010283, intron 1 of 8)	19753.0	NM_001308299	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	81.8	95.84	98.05	55.33	54.11	82.79	43.3	37.14	48.09
Merged-chr4-152171722-1	chr4	152171222	152172222	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-6378.0	NM_133348	70025.0	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	4.58	3.69	2.77	3.37	1.87	1.61	1.06	3.1	1.25
Merged-chr15-51964516-1	chr15	51964016	51965016	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_009009, intron 13 of 13)	intron (NM_009009, intron 13 of 13)	27244.0	NM_009009	19357.0	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	19.45	23.5	28.67	7.42	4.67	4.82	49.64	56.16	17.49
Merged-chr3-101775983-1	chr3	101775483	101776483	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	60240.0	NM_172295	242125.0	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	8.58	2.3	5.55	2.02	2.33	3.22	2.11	3.1	2.5
Merged-chr13-43750527-1	chr13	43750027	43751027	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	33736.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	6.86	2.3	3.7	4.72	0.47	4.82	6.34	1.33	3.75
Merged-chr6-124321643-1	chr6	124321143	124322143	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170395, intron 11 of 16)	RLTR19-int|LTR|ERVK	16992.0	NM_053094	93671.0	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	64.07	92.62	53.65	63.42	52.72	53.85	36.97	41.56	36.22
Merged-chr11-82763919-1	chr11	82763419	82764419	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025884)	promoter-TSS (NM_025884)	402.0	NM_009839	12467.0	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	124.14	118.42	129.49	116.73	124.09	135.84	135.19	142.38	73.07
Merged-chr5-137863603-1	chr5	137863103	137864103	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5554.0	NM_133209	170741.0	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	28.03	41.47	35.15	53.98	34.06	36.97	59.15	38.03	18.74
Merged-chr13-110382639-1	chr13	110382139	110383139	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12405.0	NM_152804	20620.0	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo like kinase 2	protein-coding	5.72	1.38	3.7	4.72	1.87	0.0	4.22	0.44	1.25
Merged-chr13-33953039-1	chr13	33952539	33953539	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040707, intron 1 of 4)	intron (NR_040707, intron 1 of 4)	-11620.0	NM_001163239	18105.0	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	N-ribosyldihydronicotinamide quinone reductase 2	protein-coding	7.44	22.12	15.72	15.52	26.59	27.33	35.91	35.37	11.87
Merged-chr6-119897766-1	chr6	119897266	119898266	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4932.0	NM_001166382	19365.0	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	12.01	9.68	2.77	5.4	9.33	14.47	5.28	4.42	5.0
Merged-chr2-124645912-1	chr2	124645412	124646412	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291000, intron 1 of 18)	intron (NM_001291000, intron 1 of 18)	-7669.0	NM_199240	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	18.88	32.25	26.82	16.19	16.33	40.99	25.35	19.9	36.22
Merged-chr3-28165756-1	chr3	28165256	28166256	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-97458.0	NM_001163007	665113.0	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	3.43	4.15	0.92	4.72	2.8	3.22	1.06	3.54	1.25
Merged-chr3-97665682-1	chr3	97665182	97666182	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182997, intron 5 of 7)	L1MB7|LINE|L1	7470.0	NM_182997	108097.0	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	10.87	13.36	14.8	20.24	20.06	31.35	24.29	10.61	19.36
Merged-chr4-62686881-1	chr4	62686381	62687381	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310706, intron 1 of 6)	intron (NM_001310706, intron 1 of 6)	12907.0	NM_001310706	50780.0	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.0	7.37	8.32	4.72	6.06	5.63	8.45	1.33	2.5
Merged-chr2-150868882-1	chr2	150868382	150869382	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 1 of 12)	L1M4|LINE|L1	-26312.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	22.31	27.19	18.5	30.36	28.46	28.94	26.4	19.46	9.37
Merged-chr10-121500263-1	chr10	121499763	121500763	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24013.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	12.01	6.45	20.35	5.4	6.06	11.25	7.39	7.96	15.61
Merged-chr7-24552127-1	chr7	24551627	24552627	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360169, exon 1 of 16)	5' UTR (NM_001360169, exon 1 of 16)	640.0	NM_001360169	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	12.01	0.92	7.4	12.14	5.6	3.22	7.39	1.33	2.5
Merged-chr16-20213803-1	chr16	20213303	20214303	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033237, intron 21 of 29)	intron (NM_001033237, intron 21 of 29)	27555.0	NM_198599	208158.0	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	3.43	3.23	0.0	0.67	1.4	4.82	4.22	0.88	1.25
Merged-chr11-118130110-1	chr11	118129610	118130610	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001167746)	promoter-TSS (NM_001167746)	-891.0	NM_001167746	69926.0	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	6.29	5.07	1.85	4.05	2.33	3.22	2.11	6.63	5.0
Merged-chr11-116622845-1	chr11	116622345	116623345	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172572, intron 1 of 18)	intron (NM_172572, intron 1 of 18)	1407.0	NM_001167680	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	93.24	82.94	85.1	96.48	51.32	84.4	122.52	105.24	59.95
Merged-chr3-31432037-1	chr3	31431537	31432537	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-121718.0	NM_172861	241919.0	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	3.43	4.61	4.62	4.72	4.67	8.04	2.11	2.65	1.25
Merged-chr4-155201699-1	chr4	155201199	155202199	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	20836.0	NM_011385	20481.0	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	96.68	66.35	55.5	85.69	57.85	67.52	74.99	85.78	64.95
Merged-chr16-33693824-1	chr16	33693324	33694324	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175256, intron 1 of 14)	MTD|LTR|ERVL-MaLR	9358.0	NM_175256	77446.0	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	14.87	8.75	15.72	4.72	8.4	9.65	12.67	11.05	5.0
Merged-chr5-4186968-2	chr5	4186468	4187468	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5399.0	NM_001042670	208595.0	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.57	3.23	1.85	2.7	4.2	0.0	4.22	2.65	3.12
Merged-chr9-116108949-1	chr9	116108449	116109449	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029575, intron 4 of 6)	L1MA5|LINE|L1	66414.0	NM_009371	21813.0	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	16.02	18.43	7.4	18.89	12.13	26.53	9.51	5.31	11.24
Merged-chr13-37619430-1	chr13	37618930	37619930	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-206608.0	NM_026830	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	93.82	51.15	55.5	101.21	59.25	81.99	109.84	74.73	45.59
Merged-chr2-3322888-1	chr2	3322388	3323388	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008708, intron 11 of 13)	intron (NM_008708, intron 11 of 13)	9740.0	NM_001013376	227522.0	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	26.31	29.49	21.27	18.89	18.66	16.88	21.12	27.41	21.23
Merged-chr13-81053766-1	chr13	81053266	81054266	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015587, intron 1 of 1)	intron (NR_015587, intron 1 of 1)	89692.0	NR_015587	319983.0	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	5.15	11.52	7.4	12.82	6.53	12.86	14.79	6.63	3.75
Merged-chr9-110660366-1	chr9	110659866	110660866	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028312, intron 1 of 6)	intron (NM_028312, intron 1 of 6)	3863.0	NM_028312	72654.0	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	12.59	12.9	19.42	6.75	7.0	10.45	36.97	33.16	29.35
Merged-chr1-40479638-1	chr1	40479138	40480138	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001161842, intron 5 of 9)	intron (NM_001161842, intron 5 of 9)	13632.0	NM_008365	16182.0	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	6.86	3.23	0.0	4.05	7.46	3.22	4.22	2.21	3.75
Merged-chr5-114596419-1	chr5	114595919	114596919	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	28168.0	NM_001004180	433940.0	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	13.73	12.44	2.77	25.64	22.39	18.49	13.73	14.59	23.73
Merged-chr11-54155097-1	chr11	54154597	54155597	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54173.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	15.45	10.14	7.4	13.49	8.4	3.22	13.73	7.52	5.0
Merged-chr10-30677104-1	chr10	30676604	30677604	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	intron (NM_001358842, intron 9 of 14)	-21237.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	73.79	81.1	71.22	92.44	57.38	82.79	99.28	106.12	56.83
Merged-chr6-129544389-1	chr6	129543889	129544889	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11105.0	NR_045270	100504641.0	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	6.29	3.69	4.62	10.12	5.13	3.22	3.17	2.65	5.0
Merged-chr2-164952905-1	chr2	164952405	164953405	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_013599, exon 10 of 13)	exon (NM_013599, exon 10 of 13)	4686.0	NM_013599	17395.0	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	6.86	2.76	0.92	6.07	3.27	0.0	9.51	4.42	5.0
Merged-chr6-34351187-1	chr6	34350687	34351687	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-2959.0	NM_008012	14187.0	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	10.3	7.37	5.55	29.69	16.79	23.31	14.79	11.5	6.87
Merged-chr16-22070762-2	chr16	22070242	22071242	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183029, intron 10 of 15)	intron (NM_183029, intron 10 of 15)	61258.0	NM_001357424	75826.0	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	52.63	52.99	37.92	44.53	41.52	44.21	48.58	50.85	17.49
Merged-chr10-57804927-1	chr10	57804427	57805427	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020561, intron 3 of 7)	AT_rich|Low_complexity|Low_complexity	10383.0	NM_020561	57319.0	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	9.72	11.52	16.65	6.75	10.73	15.27	9.51	10.61	15.61
Merged-chr19-29925053-1	chr19	29924553	29925553	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_133775)	promoter-TSS (NM_133775)	-60.0	NM_133775	77125.0	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	2.86	5.99	3.7	2.7	0.93	6.43	5.28	3.1	1.25
Merged-chr6-134454247-1	chr6	134453747	134454747	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008514, intron 21 of 22)	intron (NM_008514, intron 21 of 22)	39819.0	NM_001355686	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.44	5.53	0.0	7.42	2.8	0.0	3.17	3.98	6.87
Merged-chr11-75756375-1	chr11	75755875	75756875	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009536, intron 3 of 5)	intron (NM_009536, intron 3 of 5)	23488.0	NM_009536	22627.0	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	24.03	30.87	25.9	20.24	25.66	34.56	19.01	17.24	18.11
Merged-chr14-31172159-1	chr14	31171659	31172659	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_022656, exon 21 of 21)	exon (NM_022656, exon 21 of 21)	-3518.0	NM_138672	192187.0	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	14.3	7.83	5.55	14.17	11.66	17.68	22.18	10.61	10.62
Merged-chr11-69197344-1	chr11	69196844	69197844	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009661, intron 2 of 13)	intron (NM_009661, intron 2 of 13)	499.0	NM_009661	11688.0	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	10.3	1.84	3.7	5.4	1.4	0.0	0.0	2.65	1.87
Merged-chr10-19143223-1	chr10	19142723	19143723	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_038021, intron 1 of 3)	intron (NR_038021, intron 1 of 3)	1474.0	NR_038021	100504265.0	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	3.43	3.23	5.55	2.02	0.47	2.41	6.34	2.21	7.49
Merged-chr9-78821753-1	chr9	78821253	78822253	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	206207.0	NM_153098	235505.0	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.57	4.15	9.25	27.66	14.93	1.61	1.06	3.1	2.5
Merged-chr4-114997913-1	chr4	114997413	114998413	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2205.0	NM_001304559	20460.0	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	4.58	6.91	9.25	4.05	4.67	1.61	5.28	3.1	7.49
Merged-chr8-69328810-1	chr8	69328310	69329310	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	57730.0	NM_172491	211135.0	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	4.58	3.69	0.92	8.1	2.8	3.22	8.45	5.31	3.75
Merged-chr13-107794736-1	chr13	107794236	107795236	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	L1MA5|LINE|L1	95328.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	14.87	11.06	10.17	12.82	8.4	11.25	16.9	15.92	13.74
Merged-chr10-68279632-1	chr10	68279132	68280132	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023598)	promoter-TSS (NM_023598)	-906.0	NM_023598	71371.0	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	118.42	164.5	54.57	120.77	104.5	102.88	175.33	213.12	84.31
Merged-chr4-130892361-1	chr4	130891861	130892861	+	558.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-20973.0	NM_010686	16792.0	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3|Stra13	lysosomal-associated protein transmembrane 5	protein-coding	6.29	3.23	0.0	4.05	1.87	0.0	5.28	5.31	3.12
Merged-chr1-161400371-1	chr1	161399871	161400871	+	558.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009452, intron 1 of 2)	intron (NM_009452, intron 1 of 2)	4933.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	4.0	7.37	4.62	2.7	0.93	5.63	1.06	1.77	1.25
Merged-chr2-146416516-1	chr2	146416016	146417016	+	558.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95488.0	NM_001033348	241694.0	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	6.86	5.53	5.55	5.4	6.53	4.82	13.73	10.61	9.99
Merged-chr6-125218775-2	chr6	125218261	125219261	+	557.833374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001080557, intron 2 of 3)	intron (NM_001080557, intron 2 of 3)	3180.0	NM_009496	22317.0	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	17.16	16.13	14.8	14.17	14.0	10.45	17.96	19.9	21.23
Merged-chr16-65469920-1	chr16	65469420	65470420	+	557.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-50709.0	NM_008849	18736.0	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	4.0	6.45	3.7	4.05	5.13	4.82	4.22	2.21	6.87
Merged-chr8-128652907-1	chr8	128652407	128653407	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-32747.0	NM_010578	16412.0	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	20.02	28.11	26.82	22.27	13.53	24.11	20.07	18.13	9.37
Merged-chr2-52860554-1	chr2	52860054	52861054	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	intron (NM_172409, intron 1 of 26)	2686.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	49.2	61.75	42.55	58.7	64.38	63.5	97.17	89.76	51.21
Merged-chr6-88500988-1	chr6	88500488	88501488	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17812.0	NM_016906	53421.0	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	17.16	7.83	5.55	13.49	7.93	16.88	11.62	8.4	2.5
Merged-chr9-118908424-2	chr9	118907926	118908926	+	557.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-18110.0	NM_133710	69274.0	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	1.14	2.76	5.55	5.4	2.33	3.22	2.11	2.65	2.5
Merged-chr1-106643478-2	chr1	106642983	106643983	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	70807.0	NM_009741	12043.0	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	8.01	6.91	3.7	3.37	7.0	1.61	8.45	8.4	7.49
Merged-chr10-80672384-1	chr10	80671884	80672884	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021462, intron 2 of 13)	intron (NM_021462, intron 2 of 13)	3909.0	NM_021462	17347.0	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	9.15	7.83	0.0	5.4	2.8	8.04	11.62	3.54	12.49
Merged-chr10-128273088-1	chr10	128272588	128273588	+	557.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019963, intron 1 of 23)	B2_Mm1a|SINE|B2	2590.0	NM_019963	20847.0	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	5.72	2.3	12.95	2.7	3.27	3.22	8.45	6.19	3.75
Merged-chr18-10894272-1	chr18	10893772	10894772	+	557.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108720.0	NR_029781	723959.0		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.57	3.69	0.0	4.72	3.73	1.61	2.11	3.54	5.0
Merged-chr5-64414679-2	chr5	64414177	64415177	+	557.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53265.0	NR_040681	69999.0	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	10.87	6.45	9.25	6.75	6.06	6.43	2.11	5.75	6.25
Merged-chr3-138964062-1	chr3	138963562	138964562	+	557.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 5 of 13)	intron (NM_001356388, intron 5 of 13)	111139.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	15.45	16.59	8.32	10.8	9.8	12.86	13.73	13.27	5.0
Merged-chr17-34309400-1	chr17	34308900	34309900	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010382, intron 1 of 5)	intron (NM_010382, intron 1 of 5)	3533.0	NM_010382	14969.0	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	17.73	12.9	12.02	4.05	2.8	4.82	15.84	22.11	13.74
Merged-chr10-53346717-1	chr10	53346217	53347217	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001141927)	TTS (NM_001141927)	9031.0	NM_001141927	18821.0	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	12.01	6.45	1.85	5.4	5.13	8.04	8.45	10.17	7.49
Merged-chr9-21950522-1	chr9	21950022	21951022	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5231.0	NM_025870	66962.0	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	2.29	1.38	1.85	4.05	1.4	0.0	4.22	1.33	0.0
Merged-chr7-24083075-1	chr7	24082575	24083575	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289637, intron 1 of 3)	RMER15|LTR|ERVL	1178.0	NM_001289637	210135.0	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	7.44	9.22	9.25	10.8	7.0	6.43	24.29	7.96	8.74
Merged-chr10-21054949-1	chr10	21054449	21055449	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177776, intron 2 of 6)	intron (NM_001177776, intron 2 of 6)	14129.0	NM_001177776	52906.0	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	4.58	2.76	7.4	4.72	4.67	1.61	4.22	7.07	1.87
Merged-chr8-41015330-1	chr8	41014830	41015830	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005863, intron 7 of 13)	intron (NM_001005863, intron 7 of 13)	-2138.0	NR_015457	78849.0	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	22.88	29.95	17.57	27.66	26.12	31.35	100.34	95.07	54.96
Merged-chr14-54233443-1	chr14	54232943	54233943	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20486.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	7.44	3.23	6.47	4.05	7.0	4.82	9.51	2.65	3.75
Merged-chr18-20695175-1	chr18	20694675	20695675	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019737, intron 5 of 8)	intron (NM_019737, intron 5 of 8)	-29915.0	NR_155534	102633478.0		NR_155534	ENSMUSG00000085595	Gm16090	-	predicted gene 16090	ncRNA	26.89	37.78	37.0	33.74	25.66	21.7	16.9	13.27	8.74
Merged-chr13-104985893-1	chr13	104985393	104986393	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029879, intron 2 of 5)	intron (NM_029879, intron 2 of 5)	69037.0	NM_029879	52882.0	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	3.43	4.15	0.0	8.1	1.87	3.22	3.17	3.1	6.87
Merged-chr7-45413617-1	chr7	45413117	45414117	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_198190)	promoter-TSS (NM_198190)	-78.0	NM_198190	78405.0	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	2.29	1.84	7.4	7.42	3.27	3.22	4.22	1.33	2.5
Merged-chr11-98338735-1	chr11	98338235	98339235	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-9090.0	NM_010895	18013.0	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	4.58	0.46	2.77	5.4	0.0	4.02	2.11	1.33	2.5
Merged-chr3-44715647-1	chr3	44715147	44716147	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	662613.0	NR_045172	72511.0	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	2.29	4.61	0.92	0.0	8.4	0.0	4.22	4.86	1.25
Merged-chr5-140349147-1	chr5	140348647	140349647	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172277, intron 7 of 10)	MTA_Mm|LTR|ERVL-MaLR	17191.0	NM_001356584	17766.0	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	10.3	13.82	15.72	8.1	10.73	12.86	5.28	3.1	6.25
Merged-chr4-130001948-1	chr4	130001448	130002448	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199696, intron 2 of 28)	intron (NM_001199696, intron 2 of 28)	9894.0	NM_001290715	230775.0	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	1.72	0.46	9.25	0.67	0.93	0.0	2.11	0.88	1.25
Merged-chr14-31640604-1	chr14	31640104	31641104	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_025295)	promoter-TSS (NM_025295)	361.0	NM_019975	56794.0	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	48.62	60.82	36.07	69.5	56.91	58.68	83.44	76.94	33.72
Merged-chr10-61469047-1	chr10	61468547	61469547	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6786.0	NM_153542	216011.0	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	3.43	3.23	1.85	1.35	2.8	4.82	2.11	1.33	1.25
Merged-chr13-24297522-1	chr13	24297022	24298022	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16732.0	NM_026825	68732.0	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	6.86	2.3	4.62	1.35	2.8	2.41	0.0	0.0	3.75
Merged-chr2-68435768-1	chr2	68435268	68436268	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016866, intron 1 of 17)	intron (NM_016866, intron 1 of 17)	36213.0	NM_016866	53416.0	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	34.9	17.51	26.82	32.39	20.99	27.33	50.7	42.89	19.36
Merged-chr15-83293979-1	chr15	83293479	83294479	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-42205.0	NM_001004150	239559.0	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	9.15	6.91	1.85	2.7	4.2	6.43	8.45	4.86	6.87
Merged-chr6-136655218-1	chr6	136654718	136655718	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025806, intron 1 of 10)	B3|SINE|B2	6675.0	NM_025806	66857.0	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	36.61	59.44	68.45	30.36	27.06	35.37	77.1	69.42	48.71
Merged-chr7-4460710-1	chr7	4460210	4461210	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4025.0	NM_026146	67425.0	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.0	0.0	0.0	0.67	0.47	0.0	34.85	30.51	29.35
Merged-chr10-121031945-1	chr10	121031445	121032445	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2059.0	NM_011915	24117.0	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	1.14	0.92	1.85	3.37	4.2	4.82	2.11	2.21	4.37
Merged-chr15-8706488-1	chr15	8705988	8706988	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_148938, intron 2 of 9)	intron (NM_148938, intron 2 of 9)	4319.0	NM_148938	20512.0	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	8.58	10.14	16.65	6.07	2.8	9.65	4.22	10.17	9.37
Merged-chr15-85151584-1	chr15	85151084	85152084	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040360, intron 2 of 2)	intron (NR_040360, intron 2 of 2)	4548.0	NR_040360	100502602.0	Mm.390830	NR_040360	ENSMUSG00000115924	Gm19277	-	predicted gene, 19277	ncRNA	2.29	2.76	0.0	0.67	0.93	1.61	1.06	1.33	1.25
Merged-chr7-44501881-1	chr7	44501381	44502381	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028169)	TTS (NM_028169)	5293.0	NM_028169	75538.0	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	5.15	1.84	0.0	4.72	0.93	0.8	7.39	2.65	2.5
Merged-chr8-94594451-1	chr8	94593951	94594951	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028221, intron 1 of 7)	intron (NM_028221, intron 1 of 7)	7275.0	NM_028221	102122.0	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	7.44	4.61	5.55	4.72	3.27	5.63	7.39	3.98	1.25
Merged-chr7-16263622-1	chr7	16263122	16264122	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4082.0	NM_007577	12273.0	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	44.05	21.66	18.5	24.29	9.33	18.49	16.9	13.27	9.99
Merged-chr10-86703208-1	chr10	86702708	86703708	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011631, intron 3 of 17)	intron (NM_011631, intron 3 of 17)	2236.0	NM_011631	22027.0	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	14.3	15.21	28.67	22.94	10.26	9.65	16.9	7.96	5.62
Merged-chr5-129942834-1	chr5	129942334	129943334	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001327, intron 1 of 1)	intron (NM_001001327, intron 1 of 1)	725.0	NM_027121	69568.0	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	20.59	13.36	18.5	19.57	13.06	20.09	23.24	20.34	16.24
Merged-chr16-50306908-1	chr16	50306408	50307408	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027444, intron 3 of 16)	intron (NM_027444, intron 3 of 16)	125481.0	NM_027444	70508.0	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	4.58	3.69	5.55	3.37	4.2	4.82	3.17	5.31	5.0
Merged-chrX-139416933-1	chrX	139416433	139417433	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59195.0	NR_045456	78526.0	Mm.439073	NR_045455	ENSMUSG00000086807	Platr21	C330013F16Rik	pluripotency associated transcript 21	ncRNA	1.72	0.92	0.0	2.7	0.93	1.61	0.0	0.44	0.0
Merged-chrX-159503309-1	chrX	159502809	159503809	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-29359.0	NM_001358941	382252.0	Mm.296254	NM_001033472	ENSMUSG00000044150	Bclaf3	2310067E24Rik|A830080D01Rik|Gm1146	Bclaf1 and Thrap3 family member 3	protein-coding	0.57	2.3	0.0	1.35	0.93	1.61	1.06	0.0	0.0
Merged-chr18-65170782-1	chr18	65170282	65171282	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001114386, intron 13 of 30)	intron (NM_001114386, intron 13 of 30)	-78079.0	NR_029600	387231.0		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	4.58	4.61	1.85	0.67	2.33	1.61	5.28	0.44	5.0
Merged-chr2-37423932-1	chr2	37423432	37424432	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B2_Mm1t|SINE|B2	-1029.0	NM_001290642	319817.0	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	25.74	26.26	25.9	8.77	17.73	17.68	20.07	22.99	34.97
Merged-chr5-143512460-1	chr5	143511960	143512960	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347530, intron 3 of 6)	intron (NM_001347530, intron 3 of 6)	15533.0	NM_009007	19353.0	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	Rac family small GTPase 1	protein-coding	29.17	32.72	23.12	47.23	21.93	32.96	29.57	32.72	24.98
Merged-chr13-34189688-1	chr13	34189188	34190188	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033167, intron 10 of 10)	MTC|LTR|ERVL-MaLR	26724.0	NM_001110515	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	39.47	43.77	33.3	29.69	30.32	48.23	47.53	47.75	26.23
Merged-chr5-148536347-1	chr5	148535847	148536847	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359199, intron 3 of 6)	intron (NM_001359199, intron 3 of 6)	15326.0	NM_001359201	24109.0	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG|MUB|mmMUB	ubiquitin-like 3	protein-coding	30.89	40.55	35.15	37.11	29.86	16.88	49.64	41.12	34.97
Merged-chr1-131094696-1	chr1	131094196	131095196	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008551, intron 1 of 9)	MIR3|SINE|MIR	3147.0	NM_008551	17164.0	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	39.47	39.17	19.42	46.56	19.59	11.25	36.97	36.7	21.23
Merged-chr19-21288090-1	chr19	21287590	21288590	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	15812.0	NM_009551	22682.0	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	7.44	1.38	1.85	4.05	2.8	4.82	4.22	3.54	5.0
Merged-chr2-30269606-1	chr2	30269106	30270106	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252571, intron 1 of 9)	intron (NM_001252571, intron 1 of 9)	2787.0	NM_001252570	227696.0	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	37.18	45.16	35.15	46.56	46.18	60.28	38.02	38.47	28.1
Merged-chr1-155121576-1	chr1	155121076	155122076	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus4|LINE|L1	-21940.0	NM_010500	15939.0	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	11.44	6.45	6.47	5.4	4.2	6.43	7.39	1.33	8.74
Merged-chrX-167200410-1	chrX	167199910	167200910	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	8808.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	7.44	5.53	7.4	3.37	2.33	6.43	3.17	3.98	6.25
Merged-chr5-143470556-1	chr5	143470056	143471056	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	Lx8|LINE|L1	6063.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	62.93	59.9	68.45	65.45	55.98	65.11	67.6	59.25	49.96
Merged-chr2-60813199-1	chr2	60812699	60813699	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001141932, intron 2 of 14)	intron (NM_001141932, intron 2 of 14)	68239.0	NM_001141932	56878.0	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	9.15	12.44	8.32	18.22	10.73	14.47	12.67	17.24	13.74
Merged-chr16-23332428-1	chr16	23331928	23332928	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252505, intron 5 of 7)	L1M4c|LINE|L1	41958.0	NM_001252506	20440.0	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	32.04	27.19	19.42	44.53	33.12	57.07	30.63	44.66	31.85
Merged-chr15-98533138-1	chr15	98532638	98533638	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153345, intron 2 of 10)	B3|SINE|B2	1131.0	NM_001359827	69612.0	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	70.93	76.03	82.32	80.29	97.97	79.58	96.11	126.02	43.72
Merged-chr19-6663576-1	chr19	6663076	6664076	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-120506.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	2.86	0.0	5.55	4.05	0.47	1.61	1.06	0.44	3.75
Merged-chr4-141731570-1	chr4	141731070	141732070	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8151.0	NM_001017966	68817.0	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	8.01	11.98	8.32	36.43	23.33	44.21	8.45	9.29	11.24
Merged-chr6-114886204-1	chr6	114885704	114886704	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356371, intron 3 of 5)	intron (NM_001356371, intron 3 of 5)	35617.0	NM_177683	232334.0	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	10.3	9.68	3.7	5.4	5.6	7.23	9.51	3.54	8.12
Merged-chr13-59704695-1	chr13	59704195	59705195	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028157, intron 2 of 3)	intron (NM_028157, intron 2 of 3)	1502.0	NM_028157	72219.0	Mm.233883	NM_028157	ENSMUSG00000050876	Spata31d1a	1700013B16Rik|Fam75d1a|Fam75d3	spermatogenesis associated 31 subfamily D, member 1A	protein-coding	0.57	3.23	0.0	6.07	3.27	2.41	3.17	1.77	3.12
Merged-chr5-62751880-1	chr5	62751380	62752380	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178407, intron 1 of 32)	intron (NM_178407, intron 1 of 32)	14297.0	NM_178407	212285.0	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	14.3	19.35	9.25	20.92	14.46	20.9	6.34	14.15	5.62
Merged-chr10-78130195-1	chr10	78129695	78130695	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	39573.0	NM_138601	28295.0	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	2.86	2.76	3.7	2.7	1.4	0.0	5.28	3.1	3.12
Merged-chr5-141055721-1	chr5	141055221	141056221	+	557.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID4|SINE|ID	-55125.0	NM_175362	108723.0	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	57.78	114.27	69.37	90.41	85.37	40.99	104.56	151.66	33.72
Merged-chr9-123768547-1	chr9	123768047	123769047	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009913, intron 1 of 2)	intron (NM_009913, intron 1 of 2)	1336.0	NM_001166625	12769.0	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	10.3	7.83	9.25	8.77	7.93	5.63	8.45	7.07	5.0
Merged-chr16-5146920-1	chr16	5146420	5147420	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001127725)	promoter-TSS (NM_001127725)	-189.0	NM_001127725	665119.0	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	1.14	1.38	3.7	3.37	3.73	1.61	1.06	1.33	3.75
Merged-chr4-47037499-1	chr4	47036999	47037999	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151464, intron 8 of 16)	intron (NR_151464, intron 8 of 16)	19807.0	NR_151464	75691.0	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	4.0	4.61	0.0	3.37	3.73	0.0	0.0	0.0	3.75
Merged-chr8-84921663-1	chr8	84921163	84922163	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019945, intron 12 of 25)	intron (NM_019945, intron 12 of 25)	8328.0	NR_103491	100503676.0	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	1.72	3.69	1.85	3.37	3.27	8.04	6.34	2.65	3.75
Merged-chr10-85161909-1	chr10	85161409	85162409	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007771, intron 1 of 12)	intron (NM_007771, intron 1 of 12)	23145.0	NM_007771	12952.0	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	7.44	4.15	12.95	2.7	2.8	0.0	1.06	3.1	2.5
Merged-chr19-46531837-1	chr19	46531337	46532337	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30189.0	NM_053100	93679.0	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	2.29	5.07	3.7	10.12	5.6	8.84	5.28	0.88	0.0
Merged-chr15-78842606-1	chr15	78842106	78843106	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027219)	promoter-TSS (NM_027219)	-41.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	5.72	4.61	1.85	4.05	1.4	3.22	1.06	0.44	3.12
Merged-chr15-73610049-1	chr15	73609549	73610549	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033219, intron 1 of 7)	intron (NM_001033219, intron 1 of 7)	7275.0	NM_001357747	106068.0	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	6.29	2.76	3.7	12.82	5.6	2.41	2.11	8.4	9.99
Merged-chr12-91161424-1	chr12	91160924	91161924	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	51195.0	NR_030473	735273.0		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	2.86	1.84	4.62	4.05	5.6	3.22	3.17	5.31	5.0
Merged-chr2-35464716-1	chr2	35464216	35465216	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3267.0	NM_001145821	14594.0	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	13.73	24.88	9.25	14.17	8.4	20.9	14.79	15.03	31.23
Merged-chr1-105660177-1	chr1	105659677	105660677	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013784, intron 1 of 30)	intron (NM_013784, intron 1 of 30)	3499.0	NM_013784	27392.0	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	4.0	3.69	0.0	2.02	4.67	4.82	8.45	3.98	5.0
Merged-chr18-24112707-1	chr18	24112207	24113207	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_172625, exon 3 of 5)	exon (NM_172625, exon 3 of 5)	9112.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	3.43	0.92	4.62	5.4	1.4	3.22	3.17	5.75	2.5
Merged-chr12-4107565-1	chr12	4107065	4108065	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153082, exon 7 of 7)	3' UTR (NM_153082, exon 7 of 7)	24991.0	NM_153082	217378.0	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	4.0	2.3	3.7	1.35	1.4	0.0	1.06	0.0	2.5
Merged-chr14-54912733-1	chr14	54912233	54913233	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001360406, exon 2 of 10)	5' UTR (NM_001360406, exon 2 of 10)	399.0	NM_001360406	59049.0	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	9.15	9.68	12.02	10.12	9.8	23.31	19.01	7.07	11.87
Merged-chr11-103306587-1	chr11	103306087	103307087	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	38115.0	NM_133715	544817.0	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	22.88	14.75	12.02	25.64	21.93	20.9	13.73	10.17	14.36
Merged-chr12-102628433-1	chr12	102627933	102628933	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172584, intron 2 of 9)	intron (NM_172584, intron 2 of 9)	56587.0	NR_035457	100316812.0		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	10.3	2.76	11.1	4.05	4.2	7.23	8.45	0.0	7.49
Merged-chr1-153408575-1	chr1	153408075	153409075	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033736, intron 1 of 3)	intron (NR_033736, intron 1 of 3)	5658.0	NR_033736	626058.0	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	4.0	4.15	4.62	1.35	2.8	3.22	2.11	3.54	9.99
Merged-chr13-99005993-1	chr13	99005493	99006493	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1ME3Cz|LINE|L1	-21428.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	55.49	62.67	40.7	76.92	68.11	85.2	96.11	71.63	63.7
Merged-chr17-43060266-1	chr17	43059766	43060766	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	43711.0	NM_178589	94185.0	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	145.87	145.15	85.1	125.5	123.16	117.35	62.31	56.16	29.35
Merged-chr3-65661955-1	chr3	65661455	65662455	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	2667.0	NR_106200	102465905.0		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	6.29	7.37	0.0	7.42	1.87	3.22	3.17	8.4	2.5
Merged-chr7-125762530-1	chr7	125762030	125763030	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358287, intron 4 of 26)	intron (NM_001358287, intron 4 of 26)	54660.0	NM_001358287	233865.0	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	1.14	1.38	0.0	3.37	1.4	0.0	1.06	0.88	2.5
Merged-chr19-21510254-1	chr19	21509754	21510754	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	LTR16E1|LTR|ERVL	-37593.0	NM_010266	14544.0	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.0	3.23	5.55	2.7	3.73	0.8	3.17	1.33	8.12
Merged-chr18-54019665-1	chr18	54019165	54020165	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	157552.0	NM_152809	70425.0	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	7.44	12.44	7.4	18.22	10.26	9.65	7.39	13.71	8.12
Merged-chr11-72520081-1	chr11	72519581	72520581	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029932, intron 8 of 11)	intron (NM_029932, intron 8 of 11)	-30161.0	NM_153060	216892.0	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	2.86	1.84	5.55	4.05	2.8	6.43	5.28	2.65	2.5
Merged-chr18-82469543-1	chr18	82469043	82470043	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5580.0	NM_001025245	17196.0	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	4.0	6.91	14.8	6.07	9.8	12.06	3.17	1.77	3.12
Merged-chr8-70627949-1	chr8	70627449	70628449	+	557.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR26_Mus|LTR|ERVK	4146.0	NM_011819	23886.0	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	6.29	8.29	23.12	6.07	8.86	15.27	9.51	7.07	6.25
Merged-chr11-110608693-1	chr11	110608193	110609193	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	129353.0	NM_001356346	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.58	4.15	0.0	2.7	3.27	1.61	5.28	1.33	1.25
Merged-chr13-30766600-1	chr13	30766100	30767100	+	557.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013674, exon 9 of 9)	3' UTR (NM_013674, exon 9 of 9)	17367.0	NM_013674	16364.0	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	30.32	47.46	37.0	33.06	27.52	45.01	30.63	32.28	32.48
Merged-chr17-87949192-2	chr17	87948690	87949690	+	556.666626	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25860.0	NM_010830	17688.0	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	1.14	0.92	0.0	4.05	2.33	1.61	1.06	1.77	1.25
Merged-chr18-82906310-2	chr18	82905808	82906808	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4571.0	NM_183033	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	6.29	0.92	20.35	4.05	6.53	1.61	7.39	8.4	3.75
Merged-chr9-61374651-2	chr9	61374129	61375129	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083928, intron 3 of 19)	(CAGGG)n|Simple_repeat|Simple_repeat	2263.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	20.59	10.14	11.1	6.75	5.6	4.82	10.56	8.84	13.12
Merged-chr6-26104880-1	chr6	26104380	26105380	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	173454.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.0	2.76	5.55	3.37	1.87	1.61	2.11	2.65	6.25
Merged-chr17-80208563-1	chr17	80208063	80209063	+	556.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1258.0	NM_001195485	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	1.72	5.99	0.0	7.42	5.6	0.8	4.22	2.21	0.0
Merged-chr6-72616274-1	chr6	72615774	72616774	+	556.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_009444, exon 2 of 4)	exon (NM_009444, exon 2 of 4)	474.0	NM_009444	22135.0	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	168.76	149.75	74.92	167.33	158.61	108.51	198.56	174.66	86.18
Merged-chr9-79785196-2	chr9	79784700	79785700	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133718, intron 1 of 6)	L2|LINE|L2	8230.0	NM_133718	69981.0	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	10.87	14.28	7.4	6.75	14.46	8.84	9.51	15.03	5.0
Merged-chr13-98813790-2	chr13	98813299	98814299	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172591, intron 1 of 25)	L1MB7|LINE|L1	1650.0	NM_172591	218503.0	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	93.82	80.64	24.05	62.07	52.72	59.48	74.99	76.94	46.84
Merged-chr4-140902584-2	chr4	140902094	140903094	+	556.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-3766.0	NM_008812	18600.0	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	1.14	4.15	0.0	2.02	1.4	0.0	0.0	0.88	1.25
Merged-chr6-140577585-2	chr6	140577081	140578081	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144920, intron 22 of 30)	intron (NM_144920, intron 22 of 30)	-45082.0	NM_178803	11569.0	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	3.43	1.84	1.85	4.72	2.8	1.61	2.11	3.54	3.12
Merged-chr18-61416870-2	chr18	61416347	61417347	+	556.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-16416.0	NM_133249	170826.0	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	5.15	5.53	0.0	3.37	0.93	0.0	4.22	3.98	3.75
Merged-chr1-106220626-1	chr1	106220126	106221126	+	556.25	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	48757.0	NM_133821	98432.0	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	13.16	11.06	0.92	13.49	7.46	2.41	5.28	7.52	1.25
Merged-chr1-36127872-2	chr1	36127371	36128371	+	556.25	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	16442.0	NR_105862	102465540.0		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	6.29	8.75	7.4	27.66	23.33	40.19	26.4	24.32	28.1
Merged-chrX-153699261-1	chrX	153698761	153699761	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-2981.0	NM_175429	207474.0	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	6.86	2.3	5.55	8.1	2.33	4.82	2.11	6.19	3.75
Merged-chr1-135110328-1	chr1	135109828	135110828	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007955, exon 32 of 38)	exon (NM_007955, exon 32 of 38)	-5052.0	NM_001033409	329252.0	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.57	1.38	4.62	4.05	1.87	1.61	0.0	0.44	1.25
Merged-chr6-72135502-1	chr6	72135002	72136002	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001035228, intron 3 of 6)	intron (NM_001035228, intron 3 of 6)	-12305.0	NR_045165	71265.0	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	28.6	55.29	62.9	35.09	41.52	51.44	42.25	40.24	25.61
Merged-chr9-107521886-1	chr9	107521386	107522386	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-12059.0	NM_019704	56395.0	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	3.43	1.38	0.92	6.75	2.33	3.22	2.11	0.88	1.87
Merged-chr3-75219403-1	chr3	75218903	75219903	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	50675.0	NM_026460	67931.0	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	2.29	2.3	6.47	2.02	0.0	0.8	1.06	1.33	2.5
Merged-chr1-166115963-1	chr1	166115463	166116463	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033344, intron 2 of 5)	L2b|LINE|L2	11935.0	NM_001033344	240892.0	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	1.72	1.84	0.0	3.37	5.13	5.63	2.11	0.88	3.75
Merged-chr1-148893674-1	chr1	148893174	148894174	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	1028765.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.0	2.76	0.0	4.72	10.26	1.61	4.22	2.21	1.87
Merged-chr15-81355533-1	chr15	81355033	81356033	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011399, intron 1 of 8)	B3|SINE|B2	5232.0	NM_011399	20524.0	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	6.86	5.07	3.7	4.05	1.87	3.22	3.17	1.33	0.0
Merged-chr1-107565740-1	chr1	107565240	107566240	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24266.0	NM_011459	20725.0	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	4.0	5.53	1.85	6.75	3.73	0.0	1.06	4.86	5.0
Merged-chr19-17252280-1	chr19	17251780	17252780	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	87225.0	NM_001136484	14537.0	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	40.04	27.19	26.82	14.17	15.39	26.53	118.29	126.02	74.32
Merged-chr9-45944895-1	chr9	45944395	45945395	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359653, intron 16 of 26)	intron (NM_001359653, intron 16 of 26)	-5305.0	NR_106055	102465659.0		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	3.43	1.38	5.55	3.37	9.33	8.04	4.22	7.07	3.75
Merged-chr19-29505757-1	chr19	29505257	29506257	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015567, intron 3 of 3)	ORR1D2|LTR|ERVL-MaLR	16230.0	NR_015567	77779.0	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	3.43	4.15	3.7	2.02	3.27	1.61	4.22	2.65	8.12
Merged-chr9-47699878-1	chr9	47699378	47700378	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	118330.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	11.44	12.9	15.72	22.27	18.19	9.65	16.9	9.73	7.49
Merged-chr18-35563281-1	chr18	35562781	35563781	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010771, intron 1 of 14)	intron (NM_010771, intron 1 of 14)	1123.0	NM_010771	17184.0	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	114.41	146.53	138.74	93.11	102.17	145.49	120.41	140.61	107.42
Merged-chr10-6462371-1	chr10	6461871	6462871	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MCa|LINE|L1	-296222.0	NM_001302794	18390.0	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	7.44	4.61	5.55	8.77	3.73	6.43	3.17	1.33	0.0
Merged-chr8-70545934-1	chr8	70545434	70546434	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007924, intron 1 of 11)	intron (NM_007924, intron 1 of 11)	6259.0	NM_007924	13716.0	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	22.31	34.1	35.15	62.75	60.18	45.01	24.29	24.76	16.24
Merged-chr16-85305147-2	chr16	85304641	85305641	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-131434.0	NM_001198826	11820.0	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	9.72	5.53	0.0	3.37	7.93	6.43	9.51	12.82	14.99
Merged-chr11-103985369-1	chr11	103984869	103985869	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001304574)	TTS (NM_001304574)	18498.0	NM_007477	11841.0	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	6.86	6.91	13.87	76.24	55.05	94.85	52.81	39.35	56.83
Merged-chr19-25050950-1	chr19	25050450	25051450	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	intron (NM_028785, intron 1 of 47)	51421.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	9.15	12.44	22.2	10.12	5.13	6.43	10.56	9.29	8.12
Merged-chr5-112153991-1	chr5	112153491	112154491	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-52772.0	NR_045377	75569.0	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.57	0.92	0.0	1.35	1.4	4.82	3.17	0.44	6.25
Merged-chr17-86754477-1	chr17	86753977	86754977	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010137, intron 1 of 15)	CpG	613.0	NM_010137	13819.0	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	9.15	3.69	1.85	10.12	10.26	12.06	6.34	3.1	2.5
Merged-chr2-129598567-1	chr2	129598067	129599067	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355160, intron 1 of 7)	intron (NM_001355160, intron 1 of 7)	3105.0	NM_001355160	19261.0	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	69.79	52.07	65.67	45.88	35.45	56.27	62.31	62.79	34.35
Merged-chr6-26393116-1	chr6	26392616	26393616	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	461690.0	NR_040771	626904.0	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	2.86	3.69	0.0	0.0	2.8	1.61	4.22	1.77	0.0
Merged-chr12-8771692-1	chr12	8771192	8772192	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_011519, exon 1 of 5)	exon (NM_011519, exon 1 of 5)	296.0	NM_011519	20969.0	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	6.29	2.3	1.85	12.14	1.4	2.41	1.06	0.44	3.75
Merged-chr5-146778440-1	chr5	146777940	146778940	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	intron (NM_011669, intron 1 of 8)	16516.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	33.18	30.41	31.45	29.69	21.46	36.97	68.65	40.68	44.34
Merged-chr13-49195753-1	chr13	49195253	49196253	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_013610, exon 4 of 4)	3' UTR (NM_013610, exon 4 of 4)	8206.0	NM_013610	18081.0	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	80.09	76.95	92.5	81.64	85.37	123.78	59.15	60.13	95.55
Merged-chr2-173388414-1	chr2	173387914	173388914	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-111881.0	NM_022995	65112.0	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	1.14	5.53	1.85	3.37	4.67	4.82	1.06	1.77	6.25
Merged-chr11-100745290-1	chr11	100744790	100745790	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001081194, exon 14 of 17)	exon (NM_001081194, exon 14 of 17)	-7075.0	NM_001305003	19345.0	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	6.29	2.3	3.7	8.1	3.73	4.82	2.11	0.44	2.5
Merged-chr4-149806855-1	chr4	149806355	149807355	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32588.0	NM_027460	70556.0	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.72	1.38	0.0	5.4	3.73	3.22	4.22	1.77	2.5
Merged-chr15-78245751-1	chr15	78245251	78246251	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008677, intron 1 of 9)	intron (NM_008677, intron 1 of 9)	940.0	NM_008677	17972.0	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	85.81	122.57	123.94	86.36	65.78	140.66	111.96	107.89	93.68
Merged-chr9-22122256-1	chr9	22121756	22122756	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5061.0	NM_001357312	66126.0	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	13.73	17.97	14.8	12.14	11.66	30.54	14.79	17.69	16.86
Merged-chr12-35607909-1	chr12	35607409	35608409	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72920.0	NM_001314027	11622.0	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	3.43	5.99	0.0	2.7	2.33	3.22	1.06	6.63	5.0
Merged-chr10-125316780-1	chr10	125316280	125317280	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358496, intron 1 of 5)	ID_B1|SINE|B4	-7964.0	NM_001358915	20503.0	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	26.89	25.34	24.97	18.89	16.79	20.9	19.01	28.74	22.48
Merged-chr12-81483835-1	chr12	81483335	81484335	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001309847, intron 3 of 5)	intron (NM_001309847, intron 3 of 5)	1016.0	NR_132135	66272.0	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	18.88	40.55	24.05	23.62	29.39	23.31	36.97	43.33	14.99
Merged-chr2-128699359-1	chr2	128698859	128699859	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008587, intron 1 of 18)	intron (NM_008587, intron 1 of 18)	444.0	NM_008587	17289.0	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	94.96	65.89	66.6	123.47	87.24	107.71	141.53	119.83	56.21
Merged-chr4-11191782-1	chr4	11191282	11192282	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_009830)	promoter-TSS (NM_009830)	73.0	NM_001282943	12448.0	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	11.44	4.15	6.47	13.49	4.67	3.22	17.96	18.13	19.98
Merged-chr8-27087469-1	chr8	27086969	27087969	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	1628.0	NM_054044	78560.0	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	4.0	4.15	0.0	4.72	2.33	0.0	4.22	1.77	5.0
Merged-chr5-96941406-1	chr5	96940906	96941906	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20134.0	NR_131152	666266.0	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	4.58	7.37	1.85	8.77	7.0	4.82	4.22	4.86	3.75
Merged-chr8-71462947-1	chr8	71462447	71463447	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022419, intron 1 of 4)	intron (NM_022419, intron 1 of 4)	710.0	NM_022419	64296.0	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	18.31	9.22	5.55	18.89	7.46	12.06	11.62	13.27	9.37
Merged-chr5-24389222-1	chr5	24388722	24389722	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001002897, intron 5 of 13)	intron (NM_001002897, intron 5 of 13)	2921.0	NM_001002897	213948.0	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	3.43	2.76	3.7	4.05	1.87	8.04	1.06	2.65	0.0
Merged-chr2-52419503-1	chr2	52419003	52420003	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	5371.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	8.01	8.29	5.55	8.1	4.2	4.02	13.73	4.86	18.74
Merged-chr14-76237583-1	chr14	76237083	76238083	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13879.0	NR_152108	72893.0	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	1.72	5.99	7.4	1.35	0.47	0.0	1.06	2.21	1.25
Merged-chr5-67831420-1	chr5	67830920	67831920	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001038999, intron 1 of 36)	intron (NM_001038999, intron 1 of 36)	16011.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	24.6	20.27	20.35	14.17	24.72	30.54	45.42	38.47	34.97
Merged-chr8-22423467-1	chr8	22422967	22423967	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020560, intron 4 of 6)	ORR1D2|LTR|ERVL-MaLR	12127.0	NM_020560	57312.0	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	2.86	4.61	7.4	2.7	3.73	4.82	2.11	0.44	7.49
Merged-chr1-23482151-1	chr1	23481651	23482651	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-92436.0	NR_151529	105243890.0	Mm.383635	NR_151529		Gm28822	-	predicted gene 28822	ncRNA	2.86	2.76	2.77	4.72	6.06	4.82	1.06	2.21	8.74
Merged-chr11-106475481-1	chr11	106474981	106475981	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023913, intron 1 of 21)	intron (NM_023913, intron 1 of 21)	12315.0	NM_023913	78943.0	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	5.15	6.45	7.4	10.8	8.4	12.06	6.34	1.77	7.49
Merged-chr11-102440448-1	chr11	102439948	102440948	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_199200, intron 3 of 7)	intron (NM_199200, intron 3 of 7)	7215.0	NM_199200	217219.0	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	5.15	1.84	0.0	2.02	1.87	4.82	4.22	0.88	6.87
Merged-chr8-95915143-1	chr8	95914643	95915643	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26778.0	NM_010325	14719.0	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	2.29	0.92	0.0	2.7	0.47	5.63	4.22	0.0	2.5
Merged-chr6-17633957-1	chr6	17633457	17634457	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER15|LTR|ERVL	-3053.0	NM_007604	12343.0	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	39.47	41.01	43.47	34.41	20.06	26.53	25.35	18.57	16.86
Merged-chr9-45263282-2	chr9	45262719	45263719	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_136903, intron 4 of 5)	B4A|SINE|B4	3488.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	45.76	33.18	44.4	30.36	31.72	57.07	48.58	34.93	46.22
Merged-chr13-119724588-1	chr13	119724088	119725088	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175538, intron 2 of 3)	intron (NM_175538, intron 2 of 3)	31294.0	NM_175538	245269.0	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	4.58	6.45	0.0	6.07	2.33	0.0	2.11	0.88	1.25
Merged-chr10-42176310-1	chr10	42175810	42176810	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	100432.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	1.72	1.84	1.85	1.35	0.47	4.02	0.0	2.21	4.37
Merged-chr10-81129904-1	chr10	81129404	81130404	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6367.0	NM_010731	16969.0	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	73.79	73.73	45.32	71.52	52.25	74.75	76.05	71.63	59.33
Merged-chr7-63913747-1	chr7	63913247	63914247	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	-3110.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	147.59	115.2	110.99	89.06	72.31	114.94	103.51	135.75	96.18
Merged-chr10-42161884-1	chr10	42161384	42162384	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	BGLII_Mur|LTR|ERVK	114858.0	NM_019740	56484.0	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.57	1.38	0.0	2.7	2.8	6.43	4.22	1.77	3.75
Merged-chr2-31470225-1	chr2	31469725	31470725	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_007494)	promoter-TSS (NM_007494)	-45.0	NM_007494	11898.0	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	4.58	4.61	12.95	4.72	4.2	2.41	3.17	1.33	6.25
Merged-chr16-18406108-1	chr16	18405608	18406608	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_007744)	TTS (NM_007744)	7386.0	NM_001111063	12846.0	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	12.01	13.82	17.57	7.42	8.86	16.88	16.9	11.94	12.49
Merged-chrX-102067372-1	chrX	102066872	102067872	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001278534, intron 1 of 1)	intron (NM_001278534, intron 1 of 1)	3935.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	9.72	8.75	14.8	6.07	7.0	13.66	5.28	7.96	8.74
Merged-chr6-15730371-1	chr6	15729871	15730871	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	9710.0	NM_175088	16543.0	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	21.74	22.58	9.25	23.62	19.59	16.88	12.67	9.73	12.49
Merged-chr13-102644989-1	chr13	102644489	102645489	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48558.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	1.72	4.61	3.7	2.02	3.27	0.0	2.11	3.98	0.62
Merged-chr10-94844947-1	chr10	94844447	94845447	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018797, intron 12 of 30)	intron (NM_018797, intron 12 of 30)	99631.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	1.72	1.38	7.4	3.37	1.4	4.82	3.17	1.77	2.5
Merged-chr13-63573576-1	chr13	63573076	63574076	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001328514)	promoter-TSS (NM_001328514)	-116.0	NM_001328514	19206.0	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes|wig	patched 1	protein-coding	5.72	2.3	0.0	2.7	2.8	3.22	1.06	1.77	0.0
Merged-chr7-71867305-1	chr7	71866805	71867805	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42390.0	NR_130995	78156.0	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	1.14	4.61	1.85	0.67	5.13	0.0	0.0	1.77	3.75
Merged-chr9-25549311-1	chr9	25548811	25549811	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	67714.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	2.86	3.23	5.55	2.02	3.27	3.22	4.22	0.88	1.25
Merged-chr6-4808304-1	chr6	4807804	4808804	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60998.0	NM_130877	170676.0	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3|Rtl2	paternally expressed 10	protein-coding	9.72	5.07	5.55	16.19	7.0	4.82	4.22	0.88	2.5
Merged-chrX-18191049-1	chrX	18190549	18191549	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310444, intron 2 of 28)	RSINE1|SINE|B4	28474.0	NM_001310444	22289.0	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	13.16	9.68	9.25	13.49	16.33	13.66	25.35	21.22	5.0
Merged-chr17-63450471-1	chr17	63449971	63450971	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_015794, intron 4 of 8)	intron (NM_015794, intron 4 of 8)	50109.0	NM_015794	50758.0	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	5.15	9.22	18.5	2.7	7.0	3.22	11.62	7.96	11.24
Merged-chr4-149701974-1	chr4	149701474	149702474	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001029837)	promoter-TSS (NM_001029837)	-345.0	NM_001029837	18707.0	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	protein-coding	189.35	182.47	104.52	162.61	101.23	96.45	260.88	270.16	115.54
Merged-chrX-7818047-1	chrX	7817547	7818547	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290455, exon 23 of 26)	exon (NM_001290455, exon 23 of 26)	-5712.0	NM_008423	16506.0	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	5.15	5.53	1.85	4.05	3.27	3.22	5.28	1.33	9.99
Merged-chr11-59885878-1	chr11	59885378	59886378	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-35621.0	NR_130986	69854.0	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	9.72	6.91	0.0	4.72	1.4	3.22	5.28	1.77	3.75
Merged-chr13-58020596-1	chr13	58020096	58021096	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001195075, intron 10 of 16)	intron (NM_001195075, intron 10 of 16)	2604.0	NR_030544	100124491.0		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	5.15	3.69	5.55	1.35	4.2	0.0	3.17	0.44	3.75
Merged-chr12-20234240-1	chr12	20233740	20234740	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MMERGLN-int|LTR|ERV1	581539.0	NR_015521	69513.0	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	6.29	3.69	13.87	2.02	4.67	9.65	2.11	2.21	12.49
Merged-chr6-83965327-1	chr6	83964827	83965827	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355286, intron 16 of 26)	intron (NM_001355286, intron 16 of 26)	-43271.0	NM_001077694	26903.0	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	4.58	13.36	14.8	16.87	7.0	8.04	25.35	16.8	13.12
Merged-chr5-125270794-1	chr5	125270294	125271294	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70300.0	NM_016741	20778.0	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	1.72	4.15	0.0	6.75	1.4	1.61	4.22	0.0	2.5
Merged-chr5-108628409-1	chr5	108627909	108628909	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359923, intron 1 of 22)	intron (NM_001359923, intron 1 of 22)	1368.0	NM_001359924	231580.0	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	44.05	43.77	26.82	41.16	41.99	34.56	52.81	49.96	34.97
Merged-chr6-131022417-1	chr6	131021917	131022917	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	224945.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	1.72	6.45	0.0	3.37	7.0	0.0	2.11	3.98	2.5
Merged-chr1-39768044-1	chr1	39767544	39768544	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER4A|LTR|ERVK	37288.0	NM_001177348	100042065.0	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	3.43	4.15	5.55	12.14	0.93	8.04	4.22	6.63	4.37
Merged-chr1-30920881-1	chr1	30920381	30921381	+	556.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	28829.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	7.44	3.23	2.77	0.0	2.33	6.43	6.34	2.21	3.75
Merged-chr2-34371792-1	chr2	34371292	34372292	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_016768, exon 1 of 9)	exon (NM_016768, exon 1 of 9)	253.0	NM_001290576	18516.0	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	5.72	8.29	27.75	18.89	13.53	17.68	28.52	13.27	11.24
Merged-chr14-121879569-1	chr14	121879069	121880069	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_130999)	promoter-TSS (NR_130999)	-161.0	NR_130999	78312.0	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	8.58	18.89	23.12	16.19	5.6	10.45	20.07	14.15	7.49
Merged-chr9-83691854-1	chr9	83691354	83692354	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_046066, intron 2 of 2)	(TTTG)n|Simple_repeat|Simple_repeat	379.0	NR_046066	100039222.0	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	2.86	2.3	1.85	2.7	3.27	1.61	4.22	3.98	1.25
Merged-chr19-28986323-1	chr19	28985823	28986823	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MurERV4_19-int|LTR|ERVK	-4029.0	NM_001302382	67072.0	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	1.14	3.23	3.7	4.05	3.73	1.61	4.22	4.42	5.0
Merged-chr8-72316765-1	chr8	72316265	72317265	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2297.0	NM_008452	16598.0	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	17.16	4.15	7.4	58.03	34.52	53.05	6.34	7.96	12.49
Merged-chr10-94486736-1	chr10	94486236	94487236	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359762, intron 2 of 4)	MLT1K|LTR|ERVL-MaLR	-28121.0	NM_172051	319880.0	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	35.47	42.85	35.15	46.56	50.85	46.62	25.35	24.32	23.11
Merged-chr15-25959523-1	chr15	25959023	25960023	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001277317, intron 1 of 6)	intron (NM_001277317, intron 1 of 6)	11296.0	NR_106071	102465698.0		NR_106071	ENSMUSG00000098719	Mir7212	Gm28027|mmu-mir-7212	microRNA 7212	ncRNA	2.29	0.92	3.7	4.05	4.67	3.22	1.06	1.77	3.75
Merged-chr4-145283595-1	chr4	145283095	145284095	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009401, intron 10 of 12)	intron (NM_009401, intron 10 of 12)	31552.0	NM_009401	21941.0	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	5.15	3.69	1.85	6.07	5.13	1.61	4.22	2.21	1.87
Merged-chr16-76054464-1	chr16	76053964	76054964	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53680.0	NR_155447	102632240.0	Mm.417237	NR_155447	ENSMUSG00000087214	Gm15555	-	predicted gene 15555	ncRNA	10.87	8.75	9.25	21.59	11.66	19.29	8.45	14.15	8.74
Merged-chr13-29857595-1	chr13	29857095	29858095	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1922.0	NM_144536	68916.0	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	4.0	4.15	11.1	4.05	3.73	1.61	2.11	4.42	2.5
Merged-chr7-66233259-1	chr7	66232759	66233759	+	556.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	123744.0	NM_001081163	269941.0	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	13.16	11.98	24.97	5.4	4.2	4.02	5.28	1.33	8.74
Merged-chr8-80950981-1	chr8	80950481	80951481	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	63925.0	NM_027554	74841.0	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	33.18	34.56	43.47	38.46	34.52	57.07	47.53	32.72	38.72
Merged-chr10-127426918-1	chr10	127426418	127427418	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359246, intron 1 of 23)	intron (NM_001359246, intron 1 of 23)	6051.0	NM_001359243	71750.0	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	18.31	14.75	7.4	21.59	17.26	8.04	21.12	16.8	11.87
Merged-chr3-60590680-1	chr3	60590180	60591180	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310514, intron 2 of 8)	intron (NM_001310514, intron 2 of 8)	89501.0	NM_001253708	56758.0	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	10.3	10.6	9.25	14.17	15.39	12.06	17.96	4.42	8.12
Merged-chr14-62077061-1	chr14	62076561	62077561	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	215918.0	NM_173419	239133.0	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	8.01	10.6	4.62	7.42	2.8	2.41	9.51	3.98	1.25
Merged-chr12-84774078-1	chr12	84773578	84774578	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023409)	promoter-TSS (NM_023409)	808.0	NM_028863	74316.0	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	36.04	23.96	28.67	21.59	16.33	27.33	27.46	25.2	21.23
Merged-chr15-66578615-1	chr15	66578115	66579115	+	556.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081409, intron 1 of 20)	intron (NM_001081409, intron 1 of 20)	1043.0	NM_001081409	239510.0	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	57.21	62.67	34.22	43.86	45.25	43.4	46.47	60.13	26.85
Merged-chr18-62068200-2	chr18	62067695	62068695	+	555.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR17|LTR|ERVK	111786.0	NM_007420	11555.0	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	40.04	47.0	33.3	56.68	34.99	52.25	41.19	38.91	39.97
Merged-chr4-137968370-2	chr4	137967871	137968871	+	555.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-25085.0	NM_001256198	230861.0	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	10.3	1.38	1.85	9.45	1.87	1.61	2.11	3.1	1.25
Merged-chr8-13164519-1	chr8	13164019	13165019	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010684, intron 1 of 8)	intron (NM_010684, intron 1 of 8)	5358.0	NM_010684	16783.0	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B|Perk	lysosomal-associated membrane protein 1	protein-coding	33.18	25.8	16.65	18.22	20.06	20.09	31.69	16.8	14.36
Merged-chr17-28909457-1	chr17	28908957	28909957	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172450, exon 2 of 12)	exon (NM_172450, exon 2 of 12)	4192.0	NR_045457	74179.0	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	1.14	3.23	0.0	8.77	4.2	4.82	8.45	2.65	2.5
Merged-chr15-98513832-2	chr15	98513338	98514338	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER2|LTR|ERV1	5996.0	NR_034051	100217417.0	Mm.486440	NR_034051	ENSMUSG00000065336	Snora34	MBI-89	small nucleolar RNA, H/ACA box 34	snoRNA	132.14	134.55	113.77	154.51	130.16	124.59	138.36	169.35	50.59
Merged-chr15-64068472-1	chr15	64067972	64068972	+	555.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTB|LTR|ERVL-MaLR	-8024.0	NM_001360037	223601.0	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.0	4.61	1.85	3.37	5.6	8.04	2.11	2.65	1.25
Merged-chr11-106008047-2	chr11	106007556	106008556	+	555.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001037712)	promoter-TSS (NM_001037712)	-147.0	NM_001037712	192775.0	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	1.72	0.92	1.85	6.75	1.4	3.22	2.11	0.0	0.0
Merged-chr14-8174852-1	chr14	8174352	8175352	+	555.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1860.0	NM_024221	68263.0	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	13.73	11.52	7.4	13.49	13.53	17.68	11.62	8.4	12.49
Merged-chr8-122284253-2	chr8	122283764	122284764	+	555.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009569, intron 1 of 9)	CpG	2123.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	9.15	9.22	5.55	4.05	2.33	5.63	6.34	2.65	6.25
Merged-chr8-106169806-1	chr8	106169306	106170306	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357381, intron 1 of 9)	intron (NM_001357381, intron 1 of 9)	885.0	NM_001357381	330836.0	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3|y+LAT-2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	8.58	6.45	13.87	21.59	6.53	9.65	10.56	11.94	3.75
Merged-chr11-86999718-1	chr11	86999218	87000218	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5956.0	NM_001005341	77864.0	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	10.3	9.68	3.7	11.47	10.73	22.51	16.9	12.82	13.74
Merged-chr10-61069416-1	chr10	61068916	61069916	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19915.0	NM_025273	13180.0	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	4.0	0.46	3.7	2.7	1.4	4.02	3.17	1.33	4.37
Merged-chr2-6872792-1	chr2	6872292	6873292	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347094)	promoter-TSS (NM_001347094)	-757.0	NM_001347094	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.43	2.76	7.4	6.75	0.93	4.02	1.06	2.65	3.75
Merged-chr4-9337618-1	chr4	9337118	9338118	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355183, intron 2 of 5)	intron (NM_001355183, intron 2 of 5)	68301.0	NM_028940	74438.0	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	4.0	3.23	0.0	1.35	5.13	0.8	7.39	0.0	1.25
Merged-chr8-123015262-1	chr8	123014762	123015762	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	27022.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	28.6	29.49	26.82	29.01	19.59	15.27	17.96	19.9	9.99
Merged-chr16-89994090-2	chr16	89993576	89994576	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-19377.0	NM_001145886	21844.0	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	1.72	2.3	10.17	2.7	0.47	1.61	0.0	3.98	2.5
Merged-chr5-99371755-1	chr5	99371255	99372255	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-118828.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	33.75	25.34	16.65	19.57	19.13	16.88	44.36	37.58	21.86
Merged-chr1-85899460-1	chr1	85898960	85899960	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022417, intron 1 of 5)	intron (NM_022417, intron 1 of 5)	4950.0	NM_022417	64294.0	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	12.59	20.74	15.72	7.42	7.93	12.86	15.84	17.69	29.35
Merged-chr2-4569332-1	chr2	4568832	4569832	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177844, intron 2 of 11)	intron (NM_001177844, intron 2 of 11)	9578.0	NM_001177844	209630.0	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	34.9	58.98	50.87	30.36	35.92	55.46	54.92	75.17	46.22
Merged-chr14-20845469-1	chr14	20844969	20845969	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8807.0	NM_008873	18792.0	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	70.36	69.12	51.8	64.77	69.98	69.93	106.67	96.39	56.83
Merged-chr18-57132942-1	chr18	57132442	57133442	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001001979)	promoter-TSS (NM_001001979)	-148.0	NM_001001979	70417.0	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.57	1.38	5.55	0.0	3.27	2.41	5.28	0.88	6.25
Merged-chr9-96503498-1	chr9	96502998	96503998	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-24823.0	NM_001311135	19823.0	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	5.72	5.99	4.62	6.07	4.67	6.43	8.45	5.75	8.12
Merged-chrX-96135048-1	chrX	96134548	96135548	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	39003.0	NM_010833	17698.0	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	28.03	26.73	27.75	22.94	13.06	42.6	28.52	29.63	23.73
Merged-chr7-101999641-1	chr7	101999141	102000141	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_133947, exon 14 of 25)	exon (NM_133947, exon 14 of 25)	18514.0	NM_010531	16068.0	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	7.44	7.83	5.55	4.05	0.93	3.22	7.39	1.77	8.74
Merged-chr3-76005866-1	chr3	76005366	76006366	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-48917.0	NM_001291069	73124.0	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	1.72	7.83	1.85	2.02	6.06	0.0	2.11	2.21	2.5
Merged-chr14-27186430-1	chr14	27185930	27186930	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 2 of 12)	intron (NM_001289686, intron 2 of 12)	42437.0	NM_001289686	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	125.85	131.78	96.2	147.76	143.22	204.97	155.26	124.25	83.69
Merged-chr11-114980335-1	chr11	114979835	114980835	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR44C|LTR|ERVK	9551.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	1.14	1.38	9.25	14.84	10.73	11.25	2.11	1.77	5.0
Merged-chr3-106789079-1	chr3	106788579	106789579	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007651, intron 1 of 7)	intron (NM_007651, intron 1 of 7)	1070.0	NM_007651	12508.0	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	275.73	445.58	197.02	228.05	293.9	185.68	325.31	431.56	191.11
Merged-chr8-123034812-1	chr8	123034312	123035312	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	B3A|SINE|B2	7472.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	53.2	58.52	31.45	39.81	45.25	58.68	40.14	72.07	36.85
Merged-chr12-69791312-1	chr12	69790812	69791812	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_183294)	promoter-TSS (NM_183294)	-605.0	NM_183294	71091.0	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	1.14	4.61	3.7	4.05	3.73	1.61	3.17	1.33	1.25
Merged-chr1-181245746-1	chr1	181245246	181246246	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33768.0	NM_145514	226757.0	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	17.16	17.51	30.52	25.64	31.26	27.33	30.63	19.01	31.85
Merged-chr15-66904461-1	chr15	66903961	66904961	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018865, intron 1 of 4)	intron (NM_018865, intron 1 of 4)	13068.0	NM_018865	22402.0	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	8.01	3.69	0.0	10.12	2.8	6.43	2.11	4.86	1.25
Merged-chr7-3646143-1	chr7	3645643	3646643	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146176, intron 1 of 17)	intron (NM_146176, intron 1 of 17)	874.0	NM_146176	232791.0	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	81.23	71.42	52.72	63.42	44.78	61.89	81.33	46.43	68.7
Merged-chr6-54680844-1	chr6	54680344	54681344	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001289740)	promoter-TSS (NM_001289740)	-780.0	NM_001289741	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	77.8	112.89	86.95	70.85	79.77	80.38	10.56	15.48	7.49
Merged-chr16-57398830-1	chr16	57398330	57399330	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	45553.0	NM_001040397	78749.0	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.72	3.23	1.85	5.4	0.93	1.61	6.34	3.1	3.75
Merged-chr2-90578632-1	chr2	90578132	90579132	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	2015.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	180.2	196.29	94.35	182.17	118.03	138.25	151.03	175.1	112.42
Merged-chr9-37605887-1	chr9	37605387	37606387	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011449, intron 3 of 4)	intron (NM_011449, intron 3 of 4)	7833.0	NM_011449	20686.0	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	3.43	6.91	0.0	8.77	6.53	4.02	6.34	5.31	6.25
Merged-chr1-75141185-1	chr1	75140685	75141685	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026977, intron 3 of 9)	intron (NM_026977, intron 3 of 9)	506.0	NM_001356264	69171.0	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	93.24	88.93	56.42	74.22	74.17	102.08	68.65	78.71	52.46
Merged-chr9-119087737-1	chr9	119087237	119088237	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019676, intron 1 of 14)	intron (NM_019676, intron 1 of 14)	524.0	NM_001293648	18799.0	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	4.0	4.61	0.92	13.49	3.73	0.0	14.79	15.03	1.25
Merged-chr16-3745735-1	chr16	3745235	3746235	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_148924, intron 1 of 5)	intron (NM_148924, intron 1 of 5)	1636.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	28.6	27.65	9.25	22.27	23.33	29.74	32.74	21.22	18.11
Merged-chr11-70150427-1	chr11	70149927	70150927	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-16196.0	NM_001204252	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	8.58	5.53	12.95	8.1	5.6	8.04	6.34	4.42	5.0
Merged-chr9-114651210-1	chr9	114650710	114651710	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11010.0	NM_153585	78893.0	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	2.86	0.92	1.85	0.0	0.47	0.0	11.62	0.88	0.62
Merged-chr16-56031066-1	chr16	56030566	56031566	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1349.0	NM_001356450	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	30.32	23.5	17.57	18.22	13.53	20.9	21.12	7.96	11.24
Merged-chr10-78264934-1	chr10	78264434	78265434	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20292.0	NM_001081055	216131.0	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1|b2b2416Clo|b2b2613Clo	trafficking protein particle complex 10	protein-coding	4.0	0.46	4.62	4.05	0.93	1.61	7.39	2.21	2.5
Merged-chr5-110178036-1	chr5	110177536	110178536	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347389, intron 1 of 23)	intron (NM_001347389, intron 1 of 23)	1179.0	NM_008146	269682.0	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|Mea2/Golga3|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	33.75	46.54	49.95	24.96	18.66	25.72	64.43	53.5	24.36
Merged-chr11-116626937-1	chr11	116626437	116627437	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_172572)	promoter-TSS (NM_172572)	82.0	NM_172572	217344.0	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	56.63	40.55	71.22	85.01	43.85	72.34	89.78	79.59	31.85
Merged-chr5-3772191-1	chr5	3771691	3772691	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003909, intron 2 of 19)	intron (NM_001003909, intron 2 of 19)	596.0	NM_001289529	70797.0	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	7.44	11.98	11.1	2.7	6.06	9.65	2.11	5.75	14.99
Merged-chr1-43936166-1	chr1	43935666	43936666	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009418, intron 1 of 29)	intron (NM_009418, intron 1 of 29)	2172.0	NM_009418	22019.0	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	33.75	51.15	20.35	48.58	30.79	26.53	42.25	57.92	29.35
Merged-chr17-80205767-1	chr17	80205267	80206267	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360435, intron 2 of 6)	intron (NM_001360435, intron 2 of 6)	1538.0	NM_001195486	225027.0	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	14.3	17.51	19.42	30.36	14.46	17.68	15.84	13.27	9.37
Merged-chr11-98936681-1	chr11	98936181	98937181	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1015.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	26.89	23.04	9.25	27.66	7.93	31.35	16.9	18.57	13.12
Merged-chr6-145417107-1	chr6	145416607	145417607	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028742, intron 7 of 9)	intron (NM_028742, intron 7 of 9)	17818.0	NM_028742	74071.0	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1	lamin tail domain containing 1	protein-coding	2.29	2.76	3.7	3.37	2.33	3.22	0.0	1.33	2.5
Merged-chrX-143051700-1	chrX	143051200	143052200	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER20B|DNA|hAT-Charlie	-47894.0	NM_001040434	209540.0	Mm.297608	NM_001040434	ENSMUSG00000085584	Rtl9	Gm385|Mar9|Mart9|Rgag1	retrotransposon Gag like 9	protein-coding	2.29	3.23	1.85	2.02	0.0	3.22	1.06	4.86	5.0
Merged-chr10-115245696-1	chr10	115245196	115246196	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	intron (NM_025706, intron 1 of 16)	5797.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	14.87	4.61	9.25	10.12	3.73	5.63	6.34	9.73	6.87
Merged-chr6-86418864-1	chr6	86418364	86419364	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164078, intron 3 of 11)	intron (NM_001164078, intron 3 of 11)	14645.0	NM_001164078	21841.0	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	3.43	2.3	3.7	4.05	3.73	1.61	2.11	5.31	6.87
Merged-chr5-38086204-1	chr5	38085704	38086704	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359398, intron 1 of 9)	intron (NM_001359398, intron 1 of 9)	46974.0	NM_026959	71116.0	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	2.86	2.3	1.85	2.7	0.0	3.22	0.0	3.1	2.5
Merged-chr5-102066658-1	chr5	102066158	102067158	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	3263.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	82.38	92.62	95.27	112.0	91.44	87.61	157.37	166.7	86.81
Merged-chr1-92902874-1	chr1	92902374	92903374	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172850)	promoter-TSS (NM_172850)	32.0	NM_172850	241158.0	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	1.72	1.38	5.55	5.4	2.33	1.61	3.17	0.44	1.25
Merged-chr16-18235697-1	chr16	18235197	18236197	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172151)	promoter-TSS (NM_172151)	-561.0	NM_172151	27801.0	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	20.02	27.19	17.57	15.52	24.26	46.62	14.79	11.05	18.11
Merged-chr19-9100835-1	chr19	9100335	9101335	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-12879.0	NM_011681	22287.0	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	3.43	0.0	1.85	2.02	3.27	2.41	2.11	4.86	2.5
Merged-chr7-19069031-1	chr7	19068531	19069531	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_031255, intron 5 of 5)	(TTA)n|Simple_repeat|Simple_repeat	-7169.0	NM_010058	13401.0	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	6.29	2.3	1.85	2.02	1.87	3.22	3.17	3.54	3.75
Merged-chr9-65534337-1	chr9	65533837	65534837	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	45750.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	278.02	265.87	207.19	237.5	182.4	180.85	161.6	229.04	96.8
Merged-chr1-59583517-1	chr1	59583017	59584017	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001013771, intron 12 of 19)	intron (NM_001013771, intron 12 of 19)	59223.0	NM_001357842	381260.0	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	4.0	1.38	8.32	1.35	2.8	6.43	5.28	3.1	3.75
Merged-chr14-27347465-1	chr14	27346965	27347965	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	11428.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	9.72	7.83	3.7	8.1	6.06	16.08	8.45	5.31	3.75
Merged-chr15-39769115-1	chr15	39768615	39769615	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_022722, exon 10 of 10)	3' UTR (NM_022722, exon 10 of 10)	23185.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	7.44	3.69	5.55	6.75	5.13	8.04	9.51	7.07	8.74
Merged-chr15-13474465-1	chr15	13473965	13474965	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1G|LTR|ERVL-MaLR	-300790.0	NM_007666	12563.0	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.0	2.76	7.4	4.72	4.2	4.82	4.22	2.21	1.25
Merged-chr19-7295372-1	chr19	7294872	7295872	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001080390)	promoter-TSS (NM_001080390)	75.0	NM_001080390	13728.0	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	16.02	14.28	9.25	13.49	7.93	17.68	28.52	6.63	11.24
Merged-chr19-42751944-1	chr19	42751444	42752444	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029011, intron 1 of 15)	intron (NM_029011, intron 1 of 15)	831.0	NM_029011	74580.0	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	102.97	94.46	91.57	94.46	122.69	106.1	64.43	72.96	33.1
Merged-chr16-90214188-1	chr16	90213688	90214688	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6554.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	17.16	16.13	28.67	9.45	9.33	12.06	9.51	19.9	5.62
Merged-chr10-99162123-1	chr10	99161623	99162623	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027740, intron 9 of 11)	intron (NM_027740, intron 9 of 11)	53988.0	NM_015737	14426.0	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	5.72	4.61	3.7	2.7	6.53	4.82	5.28	1.33	5.0
Merged-chr4-116669484-1	chr4	116668984	116669984	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-16115.0	NM_011034	18477.0	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	37.76	33.64	47.17	34.41	22.39	54.66	42.25	29.63	42.47
Merged-chr15-37674875-1	chr15	37674375	37675375	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359841, intron 1 of 7)	intron (NM_001359841, intron 1 of 7)	5699.0	NM_001359840	52589.0	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.57	4.15	1.85	2.02	2.33	3.22	7.39	5.31	11.24
Merged-chr12-36054774-1	chr12	36054274	36055274	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	-12296.0	NM_025359	66109.0	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	17.73	9.22	10.17	26.31	17.73	6.43	6.34	1.33	5.0
Merged-chr9-16381227-1	chr9	16380727	16381727	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2996.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	6.86	9.22	8.32	6.07	8.4	11.25	8.45	8.4	5.62
Merged-chr4-58441217-1	chr4	58440717	58441717	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_037278)	promoter-TSS (NR_037278)	-119.0	NR_037278	100526502.0		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	8.58	7.37	8.32	16.19	4.67	19.29	13.73	7.96	8.12
Merged-chr6-42227470-1	chr6	42226970	42227970	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12142.0	NM_001001453	387515.0	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	2.29	3.23	3.7	4.72	4.67	4.02	3.17	0.88	5.0
Merged-chr10-57761941-1	chr10	57761441	57762441	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-22982.0	NM_021272	12140.0	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	27.46	53.45	23.12	62.07	61.11	45.82	33.8	48.64	26.85
Merged-chr7-4777369-1	chr7	4776869	4777869	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290423, intron 1 of 4)	intron (NM_001290423, intron 1 of 4)	772.0	NM_008350	16156.0	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	4.0	1.84	1.85	2.7	0.0	6.43	2.11	0.88	8.74
Merged-chr6-86517659-1	chr6	86517159	86518159	+	555.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTB_Mm|LTR|ERVL-MaLR	8530.0	NM_011865	23983.0	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	14.3	16.59	12.95	2.7	3.27	5.63	7.39	3.98	5.0
Merged-chr19-10376859-1	chr19	10376359	10377359	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-12231.0	NM_018801	54525.0	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	2.86	1.84	1.85	6.75	4.67	10.45	7.39	2.65	1.25
Merged-chr15-52458945-1	chr15	52458445	52459445	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	163392.0	NM_172816	239436.0	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	1.14	1.38	0.0	3.37	1.4	6.43	1.06	4.42	5.0
Merged-chr3-121340519-1	chr3	121340019	121341019	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155539, intron 2 of 2)	intron (NR_155539, intron 2 of 2)	48779.0	NM_024178	66789.0	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	8.58	8.29	14.8	1.35	6.06	3.22	2.11	2.21	3.75
Merged-chr2-30753309-1	chr2	30752809	30753809	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32099.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	1.72	0.46	1.85	0.0	1.4	0.8	2.11	1.33	5.0
Merged-chr1-164014794-1	chr1	164014294	164015294	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	19905.0	NM_001355132	69962.0	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	4.0	2.3	0.0	4.72	2.8	3.22	8.45	2.65	3.75
Merged-chr19-40994777-1	chr19	40994277	40995277	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008528)	promoter-TSS (NM_008528)	-242.0	NM_008528	17060.0	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	44.05	23.96	13.87	35.09	27.99	16.08	34.85	26.53	6.25
Merged-chrX-169862006-1	chrX	169861506	169862506	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	-17613.0	NM_001290506	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	5.15	6.45	5.55	8.77	13.06	3.22	12.67	1.77	11.24
Merged-chr4-133346682-1	chr4	133346182	133347182	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7367.0	NM_199306	230796.0	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	10.87	0.46	7.4	2.7	8.86	0.0	16.9	18.13	8.12
Merged-chr15-72874522-1	chr15	72874022	72875022	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-64198.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	4.0	12.9	14.8	6.07	11.66	18.49	5.28	10.61	5.0
Merged-chr1-191122053-1	chr1	191121553	191122553	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	23639.0	NM_030060	381319.0	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	69.22	67.74	67.52	58.03	25.66	45.82	26.4	34.93	31.23
Merged-chr7-75667741-2	chr7	75667232	75668232	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029332, intron 10 of 36)	intron (NM_029332, intron 10 of 36)	-180606.0	NM_001122780	207952.0	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	30.32	23.5	11.1	28.34	21.93	9.65	13.73	6.63	9.99
Merged-chr15-80014036-2	chr15	80013507	80014507	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_011057, exon 1 of 7)	5' UTR (NM_011057, exon 1 of 7)	801.0	NM_011057	18591.0	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	41.76	42.39	85.1	56.68	54.11	78.77	64.43	34.05	39.97
Merged-chr9-75436630-1	chr9	75436130	75437130	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4894.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	110.41	123.49	74.92	120.1	101.23	95.65	178.5	187.48	72.45
Merged-chr11-121260480-1	chr11	121259980	121260980	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001080932, exon 1 of 9)	exon (NM_001080932, exon 1 of 9)	493.0	NM_001080932	68837.0	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	53.77	28.57	55.5	47.23	25.66	42.6	52.81	21.22	24.98
Merged-chr11-76901785-1	chr11	76901285	76902285	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2760.0	NM_025655	66601.0	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	6.29	3.69	9.25	5.4	2.8	2.41	9.51	2.21	2.5
Merged-chr1-124077747-1	chr1	124077247	124078247	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32188.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.58	5.53	3.7	2.7	6.53	4.82	4.22	7.07	6.25
Merged-chr9-83616486-1	chr9	83615986	83616986	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68148.0	NM_172507	212531.0	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	5.15	2.76	7.4	4.72	4.67	6.43	3.17	3.1	1.87
Merged-chr8-70885788-1	chr8	70885288	70886288	+	555.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053248, intron 13 of 14)	intron (NM_053248, intron 13 of 14)	6969.0	NM_053248	114479.0	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	2.86	0.46	0.0	2.7	0.0	4.82	3.17	1.77	1.25
Merged-chr5-147450458-1	chr5	147449958	147450958	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028291, intron 1 of 18)	intron (NM_028291, intron 1 of 18)	20302.0	NM_028291	72587.0	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	16.59	21.66	17.57	18.22	14.46	23.31	13.73	7.52	11.24
Merged-chr10-81041767-1	chr10	81041267	81042267	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4436.0	NM_134135	106947.0	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|ZIP-3|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	6.29	5.53	1.85	4.05	3.27	6.43	3.17	2.65	1.25
Merged-chr18-4314769-2	chr18	4314282	4315282	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38171.0	NM_007746	26410.0	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	179.05	190.76	107.29	190.27	175.41	121.37	193.28	196.32	85.56
Merged-chr5-62865728-1	chr5	62865228	62866228	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001170705, intron 7 of 8)	RMER15|LTR|ERVL	51905.0	NM_001170705	100322896.0	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	5.72	5.07	1.85	8.1	7.46	3.22	2.11	2.21	5.0
Merged-chr7-110921988-1	chr7	110921488	110922488	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194464, intron 9 of 20)	intron (NM_194464, intron 9 of 20)	17003.0	NR_045267	100504184.0	Mm.441327	NR_045267	ENSMUSG00000087160	Gm16336	-	predicted gene 16336	ncRNA	8.01	9.22	9.25	18.22	6.53	17.68	8.45	9.73	12.49
Merged-chr11-22632500-1	chr11	22632000	22633000	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	120217.0	NM_153596	103765.0	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	15.45	14.28	11.1	18.22	14.46	6.43	23.24	8.84	14.36
Merged-chr5-86890243-1	chr5	86889743	86890743	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_153598, exon 6 of 6)	3' UTR (NM_153598, exon 6 of 6)	16694.0	NM_153598	100727.0	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	4.0	1.38	0.0	3.37	2.33	3.22	2.11	2.21	5.0
Merged-chr4-149901727-1	chr4	149901227	149902227	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029035, intron 2 of 2)	intron (NM_029035, intron 2 of 2)	53279.0	NM_029035	74646.0	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.43	2.3	0.0	2.02	2.8	0.0	3.17	0.88	3.12
Merged-chr16-31016367-1	chr16	31015867	31016867	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	65065.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.15	1.84	1.85	2.02	0.93	1.61	5.28	0.88	1.25
Merged-chr4-102569215-1	chr4	102568715	102569715	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177980)	promoter-TSS (NM_001177980)	-845.0	NM_001177980	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	25.17	52.53	43.47	28.34	24.72	24.11	20.07	29.18	22.48
Merged-chr3-20025729-1	chr3	20025229	20026229	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080634, intron 5 of 16)	intron (NM_080634, intron 5 of 16)	9581.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	17.16	29.03	24.05	26.31	20.99	34.56	16.9	17.69	19.98
Merged-chr3-20006773-1	chr3	20006273	20007273	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001276248, exon 20 of 20)	3' UTR (NM_001276248, exon 20 of 20)	28537.0	NM_001146324	12807.0	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	HPS3, biogenesis of lysosomal organelles complex 2 subunit 1	protein-coding	15.45	40.09	35.15	31.04	26.12	36.97	35.91	53.94	29.35
Merged-chr17-88540581-1	chr17	88540081	88541081	+	555.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028658, intron 1 of 21)	intron (NM_028658, intron 1 of 21)	10457.0	NM_028658	73825.0	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	14.3	18.89	7.4	9.45	12.13	31.35	15.84	11.94	25.61
Merged-chr6-119220514-2	chr6	119220019	119221019	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001033379, exon 9 of 9)	3' UTR (NM_001033379, exon 9 of 9)	-16007.0	NM_001033382	319734.0	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	4.0	2.76	0.92	4.72	4.67	2.41	3.17	2.65	5.0
Merged-chr5-90778529-1	chr5	90778029	90779029	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6094.0	NM_019932	56744.0	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	17.16	12.9	1.85	23.62	14.93	20.9	12.67	12.38	8.74
Merged-chr4-48046762-1	chr4	48046262	48047262	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1457.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	10.3	11.06	15.72	10.12	8.4	1.61	13.73	2.21	2.5
Merged-chr3-94621906-1	chr3	94621406	94622406	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293728, intron 8 of 11)	intron (NM_001293728, intron 8 of 11)	36966.0	NM_001293728	22156.0	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	6.86	1.84	1.85	7.42	7.93	9.65	1.06	1.33	1.87
Merged-chr13-24478936-2	chr13	24478493	24479493	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MT2A|LTR|ERVL	63871.0	NM_001284520	12763.0	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	20.02	11.52	5.55	13.49	9.33	21.7	28.52	13.71	16.24
Merged-chr1-136129432-1	chr1	136128932	136129932	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_046167, exon 3 of 4)	non-coding (NR_046167, exon 3 of 4)	1751.0	NR_046170	329253.0	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21	predicted gene 15850	ncRNA	8.58	10.14	12.02	6.07	8.4	9.65	13.73	6.19	13.12
Merged-chr7-99128765-1	chr7	99128265	99129265	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_178635, intron 1 of 14)	intron (NM_178635, intron 1 of 14)	12379.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	33.18	36.86	53.65	31.71	22.86	40.19	50.7	54.39	29.35
Merged-chr16-76354994-1	chr16	76354494	76355494	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_173440, intron 1 of 3)	Lx9|LINE|L1	18055.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	36.61	44.24	17.57	39.13	18.66	11.25	47.53	31.84	8.12
Merged-chr4-41556752-1	chr4	41556252	41557252	+	554.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027993, intron 1 of 5)	intron (NM_027993, intron 1 of 5)	12775.0	NM_001159583	71901.0	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	5.15	2.76	7.4	4.05	2.33	7.23	44.36	34.49	16.24
Merged-chr1-182909350-1	chr1	182908850	182909850	+	554.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45438.0	NM_016928	53791.0	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	69.22	43.77	31.45	52.63	47.12	23.31	23.24	29.18	22.48
Merged-chr7-88260488-2	chr7	88259993	88260993	+	554.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17592.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	38.9	42.39	11.1	35.09	39.19	32.15	36.97	48.64	32.48
Merged-chr4-139609161-2	chr4	139608671	139609671	+	554.333374	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001205173, intron 5 of 8)	intron (NM_001205173, intron 5 of 8)	-13723.0	NM_175438	212647.0	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	3.43	4.61	7.4	5.4	2.33	8.84	6.34	3.54	6.25
Merged-chr15-93576020-1	chr15	93575520	93576520	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	19871.0	NM_001033217	106042.0	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	7.44	0.92	0.0	0.67	2.8	1.61	4.22	1.33	2.5
Merged-chr5-139253491-1	chr5	139252991	139253991	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	-6.0	NM_001163316	67604.0	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	37.76	35.48	31.45	26.99	27.52	32.15	34.85	34.49	21.86
Merged-chr18-20892408-1	chr18	20891908	20892908	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177038, intron 1 of 28)	intron (NM_177038, intron 1 of 28)	3670.0	NM_029491	75964.0	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	13.16	7.37	19.42	12.82	17.73	4.02	12.67	7.07	25.61
Merged-chr1-191392698-1	chr1	191392198	191393198	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144880, intron 1 of 12)	intron (NM_144880, intron 1 of 12)	4343.0	NM_144880	226849.0	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	8.01	8.29	5.55	1.35	4.67	6.43	34.85	18.13	8.12
Merged-chr1-155462715-1	chr1	155462215	155463215	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45271.0	NM_011273	19775.0	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.29	2.3	3.7	7.42	4.67	8.04	6.34	4.86	0.0
Merged-chr10-69250564-1	chr10	69250064	69251064	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001252637, intron 4 of 10)	intron (NM_001252637, intron 4 of 10)	37370.0	NM_001252638	69288.0	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	29.17	29.95	42.55	24.96	19.59	24.92	26.4	27.41	20.61
Merged-chr19-37049187-1	chr19	37048687	37049687	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 9 of 10)	intron (NM_198300, intron 9 of 10)	123108.0	NM_001080706	107182.0	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	7.44	3.23	3.7	7.42	10.73	10.45	189.06	214.01	94.93
Merged-chrX-20817048-1	chrX	20816548	20817548	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31495.0	NM_009703	11836.0	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	4.58	0.92	0.0	0.67	1.4	3.22	3.17	1.77	1.25
Merged-chr2-118677390-1	chr2	118676890	118677890	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145854, intron 1 of 9)	CpG	144.0	NM_001145854	214230.0	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 (RAC1) activated kinase 6	protein-coding	2.29	1.84	0.0	3.37	2.8	1.61	4.22	2.65	6.25
Merged-chr3-144470587-1	chr3	144470087	144471087	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355234, intron 1 of 6)	intron (NM_001355234, intron 1 of 6)	99629.0	NM_011828	23908.0	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	2OST|AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	2.86	5.99	0.0	9.45	1.87	3.22	1.06	3.54	2.5
Merged-chr9-40747523-1	chr9	40747023	40748023	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133733, intron 1 of 6)	intron (NM_133733, intron 1 of 6)	-53750.0	NM_031165	15481.0	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	4.58	6.45	8.32	6.75	1.87	6.43	3.17	3.1	3.75
Merged-chr10-98759193-1	chr10	98758693	98759693	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-155449.0	NM_001359506	67972.0	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	9.15	7.83	7.4	4.05	5.6	4.82	10.56	5.31	5.0
Merged-chrX-169216392-1	chrX	169215892	169216892	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001287530, intron 1 of 12)	intron (NM_001287530, intron 1 of 12)	-29183.0	NM_009666	11704.0	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	13.16	13.36	7.4	8.77	14.46	11.25	5.28	9.29	12.49
Merged-chr6-119472405-1	chr6	119471905	119472905	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5194.0	NM_001271758	22419.0	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	9.72	6.45	6.47	17.54	7.0	22.51	16.9	7.96	9.37
Merged-chr1-106961207-1	chr1	106960707	106961707	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-19777.0	NM_172852	241196.0	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	3.43	0.92	0.0	6.75	1.87	4.82	2.11	1.33	6.25
Merged-chr11-58905022-1	chr11	58904522	58905522	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_011758)	promoter-TSS (NM_011758)	-797.0	NM_011758	22698.0	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	32.61	20.27	14.8	26.31	14.0	14.47	16.9	22.11	24.98
Merged-chr8-95053959-1	chr8	95053459	95054459	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER19B|LTR|ERVK	-1144.0	NM_001042715	330830.0	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	2.29	0.46	7.4	4.05	2.33	2.41	1.06	0.88	0.0
Merged-chr7-25627091-1	chr7	25626591	25627591	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146184)	promoter-TSS (NM_146184)	-533.0	NM_001036740	232984.0	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	6.86	2.76	5.55	11.47	9.33	20.9	9.51	0.88	11.87
Merged-chr1-172305862-1	chr1	172305362	172306362	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6505.0	NM_080419	140559.0	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	18.31	9.68	3.7	19.57	13.06	5.63	8.45	4.42	3.75
Merged-chr17-17867817-1	chr17	17867317	17868317	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1C|LTR|ERVL-MaLR	-12629.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	99.54	85.25	28.67	96.48	52.25	69.93	96.11	73.84	61.2
Merged-chr1-16667852-1	chr1	16667352	16668352	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	Lx9|LINE|L1	2661.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	16.59	26.73	26.82	10.8	17.73	27.33	34.85	30.07	41.84
Merged-chr9-7261770-1	chr9	7261270	7262270	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10744.0	NM_008607	17386.0	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	2.86	1.84	3.7	3.37	5.13	0.0	3.17	0.88	2.5
Merged-chr12-119237972-1	chr12	119237472	119238472	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_177290, exon 1 of 14)	5' UTR (NM_177290, exon 1 of 14)	304.0	NM_177290	320910.0	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	1.14	2.76	1.85	4.72	3.73	1.61	4.22	0.44	3.75
Merged-chr1-180226668-1	chr1	180226168	180227168	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011183)	TTS (NM_011183)	19282.0	NM_011183	19165.0	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	10.87	6.91	3.7	8.1	9.33	9.65	8.45	7.52	5.62
Merged-chr5-139355399-1	chr5	139354899	139355899	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001160265, intron 4 of 8)	intron (NM_001160265, intron 4 of 8)	2782.0	NM_001160265	545817.0	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	2.86	2.3	3.7	1.35	1.87	1.61	4.22	0.0	2.5
Merged-chr4-132776944-1	chr4	132776444	132777444	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011284, intron 8 of 8)	intron (NM_011284, intron 8 of 8)	8584.0	NM_011284	19891.0	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	9.15	7.37	9.25	12.14	0.93	0.0	4.22	1.77	5.0
Merged-chr10-95442481-1	chr10	95441981	95442981	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25106.0	NR_045338	70523.0	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	2.86	2.3	2.77	2.7	1.87	4.82	0.0	0.88	7.49
Merged-chr1-154787836-1	chr1	154787336	154788336	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61916.0	NM_009782	12290.0	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	8.01	7.83	8.32	13.49	8.86	16.88	19.01	6.19	9.37
Merged-chr11-98796625-1	chr11	98796125	98797125	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028722, intron 1 of 8)	intron (NM_028722, intron 1 of 8)	1109.0	NM_028722	74026.0	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male specific lethal 1	protein-coding	50.91	48.38	89.72	36.43	36.39	49.03	68.65	57.04	36.22
Merged-chr4-42978293-1	chr4	42977793	42978793	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	8347.0	NM_026088	67317.0	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	5.15	5.99	3.7	0.0	3.73	6.43	3.17	2.21	4.37
Merged-chr2-166154528-1	chr2	166154028	166155028	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355619, intron 1 of 21)	CpG	757.0	NM_001355619	72043.0	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	11.44	6.91	1.85	15.52	13.53	6.43	15.84	7.07	0.62
Merged-chr11-74650148-1	chr11	74649648	74650648	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	653.0	NM_001081158	74148.0	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	161.32	103.22	118.39	139.67	109.16	99.67	117.24	107.0	76.82
Merged-chr15-59077368-1	chr15	59076868	59077868	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 1 of 14)	intron (NM_144800, intron 1 of 14)	4658.0	NM_001146180	211401.0	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	13.16	5.99	9.25	21.59	9.8	20.9	7.39	7.52	3.75
Merged-chr12-69962618-1	chr12	69962118	69963118	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_036607)	promoter-TSS (NR_036607)	-791.0	NR_036607	100040999.0	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	4.58	1.84	3.7	5.4	3.27	1.61	4.22	1.33	3.75
Merged-chr9-52095883-1	chr9	52095383	52096383	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-19740.0	NR_105750	102465150.0		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	2.29	2.76	0.92	11.47	3.27	6.43	5.28	2.65	8.74
Merged-chr17-27969965-1	chr17	27969465	27970465	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	60659.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	28.6	20.74	17.57	31.71	15.39	13.66	11.62	7.07	9.99
Merged-chr2-160317978-1	chr2	160317478	160318478	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033411, intron 2 of 2)	intron (NM_001033411, intron 2 of 2)	9516.0	NM_001033411	329554.0	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	21.17	17.05	11.1	13.49	13.06	22.51	25.35	17.69	6.25
Merged-chr10-128409186-1	chr10	128408686	128409686	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001358973)	promoter-TSS (NM_001358973)	-6.0	NM_001358973	69917.0	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	27.46	23.04	29.6	17.54	20.06	18.49	22.18	34.49	16.24
Merged-chr11-95868734-1	chr11	95868234	95869234	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008081, intron 8 of 10)	intron (NM_008081, intron 8 of 10)	9917.0	NR_045187	73906.0	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	13.73	5.53	12.95	2.7	2.33	4.02	14.79	3.1	2.5
Merged-chr11-83668315-1	chr11	83667815	83668815	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5731.0	NM_013652	20303.0	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	5.15	5.99	21.27	5.4	8.86	4.82	5.28	7.07	7.49
Merged-chr2-103282533-1	chr2	103282033	103283033	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007914, intron 2 of 8)	intron (NM_007914, intron 2 of 8)	20663.0	NM_007914	13661.0	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	3.43	2.3	3.7	4.05	8.4	1.61	1.06	1.33	5.0
Merged-chr6-17728691-1	chr6	17728191	17729191	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289624, intron 1 of 15)	B3A|SINE|B2	-14901.0	NM_001289627	64213.0	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	2.86	6.91	7.4	14.17	7.93	3.22	5.28	5.75	8.74
Merged-chr1-37490990-1	chr1	37490490	37491490	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 4 of 15)	intron (NM_173870, intron 4 of 15)	-2385.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	64.64	76.49	41.62	60.05	45.25	45.82	64.43	57.04	45.59
Merged-chr2-91459221-1	chr2	91458721	91459721	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172668, intron 1 of 37)	intron (NM_172668, intron 1 of 37)	1690.0	NM_001145857	228357.0	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	7.44	3.23	1.85	9.45	1.4	2.41	9.51	2.21	6.25
Merged-chrX-159840418-1	chrX	159839918	159840918	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001135728)	promoter-TSS (NM_001135728)	-50.0	NM_001135728	58194.0	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	5.72	3.23	5.55	2.02	1.87	4.82	4.22	2.21	3.12
Merged-chr15-31347233-1	chr15	31346733	31347733	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	RMER19B2|LTR|ERVK	20526.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.86	3.23	0.0	5.4	4.2	4.82	3.17	3.54	6.87
Merged-chr8-11335478-1	chr8	11334978	11335978	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-22652.0	NM_009931	12826.0	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.86	3.69	3.7	9.45	4.2	4.82	4.22	1.33	3.75
Merged-chr1-62719900-1	chr1	62719400	62720400	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001077404, intron 2 of 16)	intron (NM_001077404, intron 2 of 16)	16583.0	NM_001077407	18187.0	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	121.28	105.98	65.67	52.63	50.85	37.78	25.35	16.36	17.49
Merged-chr14-76899527-1	chr14	76899027	76900027	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	137090.0	NM_172488	210808.0	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase domain containing 1	protein-coding	1.14	3.69	3.7	3.37	1.87	1.61	1.06	0.88	8.74
Merged-chr12-80791375-1	chr12	80790875	80791875	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001242419, intron 1 of 6)	intron (NM_001242419, intron 1 of 6)	843.0	NM_001242419	217684.0	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	417.6	448.34	415.3	344.78	326.56	321.52	442.54	420.06	268.55
Merged-chr2-18205316-1	chr2	18204816	18205816	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010804, intron 17 of 22)	intron (NM_010804, intron 17 of 22)	140731.0	NM_001252561	17354.0	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	1.72	1.38	1.85	0.67	0.93	3.22	2.11	6.63	5.0
Merged-chr9-75437136-2	chr9	75436627	75437627	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4397.0	NM_001039522	235497.0	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	63.5	49.3	33.3	74.89	39.65	45.01	129.91	110.1	51.84
Merged-chr5-96996608-1	chr5	96996108	96997108	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1081.0	NM_080708	140780.0	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	107.55	113.35	72.15	94.46	109.16	70.73	94.0	99.93	47.46
Merged-chr10-39246598-1	chr10	39246098	39247098	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-82804.0	NM_001127376	327743.0	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	2.29	1.84	3.7	2.7	1.4	0.0	2.11	0.44	5.0
Merged-chr2-30801212-1	chr2	30800712	30801712	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_198000, exon 1 of 7)	exon (NM_198000, exon 1 of 7)	525.0	NM_198000	73598.0	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	2.86	3.23	1.85	3.37	3.27	1.61	6.34	2.21	2.5
Merged-chr11-115202486-2	chr11	115201997	115202997	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001033393, intron 6 of 9)	intron (NM_001033393, intron 6 of 9)	15010.0	NM_001033393	320534.0	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	6.29	0.92	2.77	8.77	4.2	8.04	5.28	3.98	6.25
Merged-chr8-122280828-1	chr8	122280328	122281328	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1313.0	NM_009569	22761.0	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	26.89	32.72	34.22	24.29	25.66	31.35	64.43	57.92	23.11
Merged-chr13-60682430-1	chr13	60681930	60682930	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_134062, intron 2 of 26)	intron (NM_134062, intron 2 of 26)	80219.0	NM_134062	69635.0	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	132.14	188.46	126.72	165.98	140.42	123.78	195.39	281.22	121.78
Merged-chr15-31343821-1	chr15	31343321	31344321	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027496, intron 1 of 3)	intron (NM_027496, intron 1 of 3)	23938.0	NM_001357923	67434.0	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	2.29	2.3	3.7	10.12	6.06	1.61	4.22	0.88	1.25
Merged-chr16-4551219-2	chr16	4550732	4551732	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_031182, exon 4 of 7)	exon (NM_031182, exon 4 of 7)	8488.0	NM_031182	83383.0	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	3.43	1.38	0.0	4.05	0.93	0.0	3.17	1.33	5.0
Merged-chr8-70820296-1	chr8	70819796	70820796	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008353, intron 15 of 15)	intron (NM_008353, intron 15 of 15)	11847.0	NM_008353	16161.0	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	4.58	1.84	1.85	4.72	1.87	2.41	4.22	1.33	3.75
Merged-chr7-127948311-1	chr7	127947811	127948811	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1586.0	NM_001319147	77613.0	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	13.73	5.07	16.65	7.42	3.73	1.61	6.34	5.31	5.62
Merged-chr14-64638629-1	chr14	64638129	64639129	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-13902.0	NM_001081177	16554.0	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	13.16	8.75	1.85	12.14	15.86	6.43	23.24	18.57	8.74
Merged-chr11-20204144-1	chr11	20203644	20204644	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008996, intron 1 of 5)	intron (NM_008996, intron 1 of 5)	2732.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	124.14	123.03	65.67	126.17	97.5	88.42	120.41	138.4	68.7
Merged-chr5-134704358-1	chr5	134703858	134704858	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007925, intron 36 of 36)	intron (NM_007925, intron 36 of 36)	-15768.0	NM_010717	16885.0	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	3.43	3.23	1.85	3.37	0.93	1.61	4.22	0.88	3.75
Merged-chr1-131431620-3	chr1	131431139	131432139	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081011, intron 3 of 22)	intron (NM_001081011, intron 3 of 22)	95722.0	NM_001081011	14270.0	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	68.65	78.79	41.62	95.81	69.51	62.7	52.81	64.11	52.46
Merged-chr19-40742072-1	chr19	40741572	40742572	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009848)	TTS (NM_009848)	82302.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	4.58	5.07	3.7	6.07	1.87	8.04	6.34	0.88	12.49
Merged-chr6-73223018-2	chr6	73222528	73223528	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1397.0	NM_001164669	330355.0	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	4.58	4.61	0.0	4.72	1.87	2.41	0.0	2.21	2.5
Merged-chr10-42093356-1	chr10	42092856	42093856	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-74974.0	NM_001034858	213402.0	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	4.0	0.92	1.85	4.72	2.8	0.8	2.11	3.54	8.74
Merged-chr19-38930146-1	chr19	38929646	38930646	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_008234)	promoter-TSS (NM_008234)	-844.0	NM_008234	15201.0	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	6.86	3.23	1.85	6.07	4.2	8.04	5.28	2.21	2.5
Merged-chr2-18916684-1	chr2	18916184	18917184	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	intron (NM_008845, intron 1 of 9)	81437.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	29.75	30.87	24.05	20.92	16.79	12.86	15.84	9.29	5.62
Merged-chr19-23893350-1	chr19	23892850	23893850	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177034, exon 2 of 13)	exon (NM_177034, exon 2 of 13)	134474.0	NM_177034	319924.0	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.57	0.46	0.92	2.02	0.93	3.22	2.11	0.44	0.0
Merged-chr15-27520127-1	chr15	27519627	27520627	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	-51367.0	NR_106065	102466808.0		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	4.58	1.38	1.85	5.4	1.87	3.22	1.06	0.88	7.49
Merged-chr8-125514207-1	chr8	125513707	125514707	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001357372, intron 2 of 21)	intron (NM_001357372, intron 2 of 21)	-21374.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	8.01	10.6	10.17	15.52	10.26	12.86	25.35	18.13	16.24
Merged-chr11-26211977-1	chr11	26211477	26212477	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-1401.0	NR_027973	70626.0	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	8.58	11.98	7.4	8.1	7.0	14.47	5.28	4.86	3.75
Merged-chr19-6502162-1	chr19	6501662	6502662	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001205234, intron 17 of 22)	intron (NM_001205234, intron 17 of 22)	40908.0	NM_009203	20521.0	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.57	2.3	0.0	1.35	2.8	7.23	3.17	3.98	1.25
Merged-chr10-30673876-1	chr10	30673376	30674376	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 9 of 14)	MER90|LTR|ERV1	-18009.0	NM_001111267	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	18.88	11.98	12.95	14.17	12.13	25.72	12.67	13.27	8.74
Merged-chr16-21646195-1	chr16	21645695	21646695	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	48470.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	9.72	7.83	1.85	14.84	11.2	40.19	8.45	11.5	29.35
Merged-chr15-6284764-1	chr15	6284264	6285264	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15025.0	NM_001008702	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	20.02	16.59	22.2	18.22	14.93	12.86	11.62	14.59	5.62
Merged-chr9-122014481-1	chr9	122013981	122014981	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18455.0	NM_153540	215494.0	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.57	1.38	7.4	3.37	0.0	4.82	1.06	0.44	3.12
Merged-chr15-98772786-1	chr15	98772286	98773286	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_011718, exon 5 of 5)	exon (NM_011718, exon 5 of 5)	5364.0	NM_011718	22410.0	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	12.01	3.23	5.55	6.75	4.2	8.04	2.11	2.21	5.0
Merged-chr12-32816161-1	chr12	32815661	32816661	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE-int|LTR|ERVL-MaLR	-4174.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	6.29	5.99	5.55	8.1	2.8	12.86	5.28	1.77	8.74
Merged-chr14-30095601-1	chr14	30095101	30096101	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 28 of 46)	intron (NM_001083616, intron 28 of 46)	72968.0	NM_175343	218865.0	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	1.14	0.0	7.4	4.72	1.87	0.0	1.06	1.33	3.75
Merged-chr1-171157239-1	chr1	171156739	171157739	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001315499, intron 1 of 5)	intron (NM_001315499, intron 1 of 5)	1721.0	NM_001315500	17528.0	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	5.15	5.07	5.55	3.37	8.86	7.23	4.22	3.54	12.49
Merged-chr8-70328898-1	chr8	70328398	70329398	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008107)	promoter-TSS (NM_008107)	-867.0	NM_008107	14559.0	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	5.15	0.92	3.7	2.02	3.73	4.82	3.17	3.98	3.75
Merged-chr11-95729104-2	chr11	95728617	95729617	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	5531.0	NR_028263	320616.0	Mm.428140	NM_177209	ENSMUSG00000075596	B130006D01Rik	-	RIKEN cDNA B130006D01 gene	ncRNA	32.61	48.38	14.8	16.87	23.33	43.4	78.16	50.85	31.23
Merged-chr6-124835386-1	chr6	124834886	124835886	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013530, intron 9 of 9)	intron (NM_013530, intron 9 of 9)	4889.0	NM_013530	14695.0	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	76.66	76.03	44.4	103.23	111.03	86.81	48.58	63.67	28.73
Merged-chr12-32001853-1	chr12	32001353	32002353	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	-51608.0	NM_001361928	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	6.29	3.69	5.55	8.1	0.47	5.63	1.06	2.21	3.75
Merged-chr12-79725894-1	chr12	79725394	79726394	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	198839.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	24.6	28.11	20.35	29.69	19.59	12.86	20.07	21.22	11.87
Merged-chr1-79820712-1	chr1	79820212	79821212	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009255, intron 2 of 8)	intron (NM_009255, intron 2 of 8)	37953.0	NM_009255	20720.0	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	5.72	1.38	0.92	6.07	3.73	0.8	4.22	2.65	5.62
Merged-chr14-54423552-1	chr14	54423052	54424052	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-3357.0	NM_026851	68836.0	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	6.29	2.76	11.1	7.42	2.8	1.61	2.11	3.1	2.5
Merged-chr1-153746926-1	chr1	153746426	153747426	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2500.0	NM_011882	24014.0	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	3.43	4.61	1.85	3.37	3.27	0.8	5.28	3.1	2.5
Merged-chr5-35718260-1	chr5	35717760	35718760	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359895, intron 5 of 17)	intron (NM_001359895, intron 5 of 17)	11016.0	NM_194344	231147.0	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	4.58	2.3	5.55	3.37	3.73	8.04	1.06	1.33	5.0
Merged-chr1-171688554-1	chr1	171688054	171689054	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007649, intron 1 of 3)	L1_Mus2|LINE|L1	6562.0	NM_001360767	12506.0	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	12.01	16.13	3.7	17.54	11.66	16.88	19.01	18.57	24.36
Merged-chr14-122465118-1	chr14	122464618	122465618	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_022987, exon 1 of 2)	exon (NM_022987, exon 1 of 2)	540.0	NM_022987	65100.0	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	4.58	4.15	3.7	5.4	0.93	1.61	2.11	3.1	2.5
Merged-chr2-157417415-1	chr2	157416915	157417915	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-6878.0	NM_009271	20779.0	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	5.15	1.38	0.92	3.37	1.87	3.22	7.39	3.54	5.62
Merged-chr8-68205591-1	chr8	68205091	68206091	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-70937.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	53.2	75.11	39.77	45.88	34.99	27.33	39.08	47.31	34.97
Merged-chr9-30424436-1	chr9	30423936	30424936	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2893.0	NM_028874	102607.0	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	2.86	1.84	3.7	3.37	0.47	0.0	7.39	1.77	2.5
Merged-chrX-77597836-1	chrX	77597336	77598336	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020601, intron 1 of 15)	ID_B1|SINE|B4	77616.0	NM_001101585	628893.0	Mm.477437	NM_001101585		Cldn34-ps	EG628893|Gm6927	claudin 34, pseudogene	protein-coding	4.58	4.15	0.0	3.37	4.67	8.04	3.17	2.65	1.25
Merged-chr13-52034250-1	chr13	52033750	52034750	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MC|LINE|L1	-62491.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	36.61	52.99	47.17	36.43	37.32	62.7	85.55	74.28	43.09
Merged-chr12-8511695-1	chr12	8511195	8512195	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER68|LTR|ERVL	-11686.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	9.15	14.75	1.85	26.31	28.46	24.11	116.18	159.62	63.08
Merged-chr15-66676746-1	chr15	66676246	66677246	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009375, intron 5 of 47)	intron (NM_009375, intron 5 of 47)	5976.0	NM_009375	21819.0	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	4.0	0.46	0.0	2.7	2.33	3.22	2.11	2.65	1.25
Merged-chr5-137705421-1	chr5	137704921	137705921	+	554.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-20668.0	NM_001303266	231801.0	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	10.87	10.6	11.1	7.42	9.8	11.25	11.62	8.84	9.99
Merged-chr14-73509233-1	chr14	73508733	73509733	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026119)	promoter-TSS (NM_026119)	-816.0	NM_026119	67381.0	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	4.0	6.91	9.25	4.05	7.46	12.06	12.67	7.52	6.87
Merged-chr16-33937781-1	chr16	33937281	33938281	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145884, intron 10 of 14)	intron (NM_001145884, intron 10 of 14)	29257.0	NM_001348087	22247.0	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	17.16	14.75	12.02	17.54	20.53	28.13	15.84	10.61	6.25
Merged-chr7-80172845-1	chr7	80172345	80173345	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13996.0	NM_013659	20352.0	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	18.88	9.68	11.1	11.47	8.86	7.23	19.01	11.94	13.12
Merged-chr1-16675209-1	chr1	16674709	16675709	+	554.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027415, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	10018.0	NM_026392	70397.0	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	1.72	4.61	0.92	1.35	1.87	9.65	4.22	5.31	9.37
Merged-chr17-65864894-1	chr17	65864394	65865394	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001198949, intron 2 of 9)	intron (NM_001198949, intron 2 of 9)	20029.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	8.58	5.07	0.0	4.72	4.67	4.82	1.06	0.88	5.0
Merged-chr14-26579007-1	chr14	26578507	26579507	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001134465)	promoter-TSS (NM_001134465)	-543.0	NM_001134465	211922.0	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	39.47	46.08	37.92	34.41	39.65	40.19	39.08	30.07	28.1
Merged-chr11-98747067-1	chr11	98746567	98747567	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	5282.0	NM_001313983	21833.0	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	33.75	28.57	26.82	34.41	25.66	34.56	63.37	44.22	24.98
Merged-chr13-83131523-1	chr13	83131023	83132023	+	554.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-372511.0	NM_001347572	17260.0	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	6.29	3.23	1.85	2.02	3.73	4.82	1.06	4.42	1.25
Merged-chr8-36832047-1	chr8	36831547	36832547	+	553.666687	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001194940, intron 4 of 17)	intron (NM_001194940, intron 4 of 17)	-98993.0	NM_001194941	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.15	2.3	2.77	2.7	2.8	3.22	3.17	4.86	0.0
Merged-chr7-19821873-1	chr7	19821373	19822373	+	553.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_033601, intron 1 of 8)	intron (NM_033601, intron 1 of 8)	882.0	NM_033601	12051.0	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	45.19	49.3	33.3	41.16	34.99	54.66	99.28	79.15	49.96
Merged-chr4-21931375-1	chr4	21930875	21931875	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175234)	promoter-TSS (NM_175234)	49.0	NM_175234	76132.0	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	1.14	0.46	2.77	9.45	0.93	1.61	3.17	1.33	0.0
Merged-chr9-110625039-2	chr9	110624537	110625537	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	-644.0	NM_026012	67169.0	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	6.86	7.37	0.0	3.37	4.67	10.45	6.34	2.65	8.74
Merged-chr11-76033553-1	chr11	76033053	76034053	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5771.0	NM_029658	76566.0	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	5.15	5.07	1.85	2.7	3.27	1.61	4.22	4.86	6.25
Merged-chr8-125176538-1	chr8	125176038	125177038	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	122343.0	NM_174854	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.72	6.91	3.7	9.45	19.13	12.86	1.06	1.77	5.0
Merged-chr7-83675771-2	chr7	83675280	83676280	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360088, intron 6 of 18)	intron (NM_001360088, intron 6 of 18)	-20285.0	NM_001360089	16170.0	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	9.15	1.84	3.7	4.05	1.4	0.0	1.06	6.19	3.75
Merged-chr5-75151316-1	chr5	75150816	75151816	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347718)	promoter-TSS (NM_001347718)	-935.0	NR_144636	18595.0	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	1.14	3.69	0.0	7.42	0.0	0.0	3.17	0.44	1.87
Merged-chr3-69006505-1	chr3	69006005	69007005	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356976, intron 2 of 23)	intron (NM_001356976, intron 2 of 23)	1767.0	NM_133786	70099.0	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	48.62	62.21	72.15	46.56	48.52	39.39	46.47	52.62	41.84
Merged-chr4-34465068-1	chr4	34464568	34465568	+	553.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8b|LINE|L1	-85547.0	NM_001007589	433693.0	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	2.29	0.92	0.0	2.7	1.4	0.8	0.0	0.0	2.5
Merged-chr8-108692739-1	chr8	108692239	108693239	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21905.0	NM_007496	11906.0	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	95.53	75.57	46.25	90.41	62.51	88.42	73.93	83.57	39.35
Merged-chr5-123884128-1	chr5	123883628	123884628	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4108.0	NM_175520	243270.0	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	37.76	14.28	11.1	16.19	9.33	4.02	22.18	14.59	9.99
Merged-chr17-50122716-1	chr17	50122216	50123216	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	67781.0	NM_181397	76438.0	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	12.01	3.69	10.17	5.4	5.13	4.02	5.28	7.52	8.74
Merged-chr9-108479918-1	chr9	108479418	108480418	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008483)	promoter-TSS (NM_008483)	56.0	NM_008483	16779.0	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	6.29	5.99	0.0	9.45	4.2	4.82	8.45	3.54	2.5
Merged-chr6-94054128-1	chr6	94053628	94054628	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	-140438.0	NM_001083320	14924.0	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	3.43	5.53	3.7	8.1	5.6	7.23	4.22	2.21	1.25
Merged-chr2-58477212-1	chr2	58476712	58477712	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355048, intron 5 of 10)	intron (NM_001355048, intron 5 of 10)	84198.0	NM_001355049	11477.0	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	4.0	2.3	1.85	7.42	1.4	0.0	3.17	0.0	5.0
Merged-chr13-91403284-1	chr13	91402784	91403784	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15199.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	1.14	0.46	1.85	2.7	3.73	8.04	0.0	0.0	4.37
Merged-chr3-138982464-1	chr3	138981964	138982964	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356388, intron 4 of 13)	B4A|SINE|B4	92737.0	NM_145544	229877.0	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	4.0	5.07	11.1	2.7	3.73	4.02	5.28	3.98	11.87
Merged-chrX-167050410-1	chrX	167049910	167050910	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19960.0	NM_001101606	667794.0	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	26.31	25.8	19.42	29.69	24.72	9.65	33.8	30.07	19.36
Merged-chr4-11476327-1	chr4	11475827	11476827	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9631.0	NM_001081183	66185.0	Mm.331487	NM_001081183	ENSMUSG00000040720	Virma	1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429	vir like m6A methyltransferase associated	protein-coding	11.44	7.37	15.72	2.7	5.13	4.02	7.39	11.5	6.25
Merged-chr8-105276498-1	chr8	105275998	105276998	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_030152)	promoter-TSS (NM_030152)	51.0	NM_030152	78688.0	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	1.14	2.76	5.55	6.75	5.6	1.61	1.06	1.77	0.0
Merged-chr15-43624610-1	chr15	43624110	43625110	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	147381.0	NM_025736	66736.0	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	1.72	5.53	1.85	2.02	4.67	1.61	5.28	2.21	3.75
Merged-chr4-123664337-1	chr4	123663837	123664837	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199137, intron 1 of 92)	CpG	-1544.0	NR_136925	102633214.0	Mm.399387	NR_136925		Gm12925	-	predicted gene 12925	ncRNA	95.53	74.65	111.92	93.11	58.31	98.06	128.85	60.58	56.83
Merged-chr14-64901229-1	chr14	64900729	64901729	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177338, intron 2 of 9)	intron (NM_177338, intron 2 of 9)	48628.0	NM_177338	219150.0	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	7.44	9.68	3.7	10.12	3.73	3.22	12.67	19.9	12.49
Merged-chr17-75523924-1	chr17	75523424	75524424	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360103, intron 13 of 16)	intron (NM_001360103, intron 13 of 16)	28022.0	NM_133747	72722.0	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	2.86	2.3	3.7	1.35	2.33	1.61	1.06	2.21	1.87
Merged-chr11-83630775-1	chr11	83630275	83631275	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18603.0	NM_011337	20302.0	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	33.75	23.96	18.5	76.92	41.99	92.44	34.85	31.84	24.36
Merged-chr7-4518691-1	chr7	4518191	4519191	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009406, intron 7 of 7)	intron (NM_009406, intron 7 of 7)	-2716.0	NM_011618	21955.0	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	11.44	7.83	22.2	13.49	5.6	20.09	12.67	10.17	12.49
Merged-chr5-45448877-1	chr5	45448377	45449377	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024236, intron 1 of 6)	MTD|LTR|ERVL-MaLR	1352.0	NM_024236	110391.0	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	3.43	5.53	5.55	10.8	6.06	10.45	9.51	7.07	6.25
Merged-chr4-133480688-1	chr4	133480188	133481188	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175307, intron 1 of 1)	intron (NM_175307, intron 1 of 1)	555.0	NM_175307	100342.0	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	4.0	4.15	0.92	11.47	4.2	5.63	6.34	4.86	2.5
Merged-chr14-64178834-1	chr14	64178334	64179334	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253715, intron 4 of 4)	intron (NM_001253715, intron 4 of 4)	74511.0	NM_028525	73382.0	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	12.59	14.28	7.4	11.47	5.6	9.65	7.39	10.17	13.74
Merged-chr2-71655964-1	chr2	71655464	71656464	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-63453.0	NR_037979	381371.0	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	1.14	1.84	3.7	6.75	2.8	2.41	10.56	5.31	6.25
Merged-chr3-37687399-1	chr3	37686899	37687899	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	36961.0	NM_198657	381438.0	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	7.44	5.99	7.4	6.07	1.87	4.02	4.22	4.42	6.25
Merged-chrX-169888378-2	chrX	169887870	169888870	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001290505, intron 1 of 9)	intron (NM_001290505, intron 1 of 9)	8751.0	NM_001290505	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	1.14	0.92	12.95	6.07	1.87	8.04	9.51	7.96	3.75
Merged-chr14-30627110-1	chr14	30626610	30627610	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011103)	promoter-TSS (NM_011103)	-902.0	NM_011103	18753.0	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	95.53	119.8	96.2	122.12	65.78	104.49	135.19	117.62	98.68
Merged-chr6-55379918-1	chr6	55379418	55380418	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003685, intron 4 of 12)	intron (NM_001003685, intron 4 of 12)	3623.0	NM_001003685	14602.0	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	0.0	0.92	7.4	2.7	0.0	1.61	2.11	1.33	2.5
Merged-chr12-40217790-1	chr12	40217290	40218290	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013562, intron 1 of 11)	intron (NM_013562, intron 1 of 11)	5021.0	NR_035459	100316693.0		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	18.88	6.91	6.47	6.75	6.06	3.22	5.28	11.5	4.37
Merged-chrX-73343086-1	chrX	73342586	73343586	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001160229, intron 1 of 4)	intron (NM_001160229, intron 1 of 4)	465.0	NM_001160229	27081.0	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	31.46	29.49	14.8	32.39	26.59	35.37	24.29	24.76	16.24
Merged-chr2-31881144-1	chr2	31880644	31881644	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6137.0	NM_011836	23928.0	Mm.69566	NM_011836	ENSMUSG00000026840	Lamc3	1110064A23Rik|AI562206|AW240805	laminin gamma 3	protein-coding	5.15	3.23	5.55	6.07	4.67	12.06	4.22	2.65	8.74
Merged-chr16-24953514-1	chr16	24953014	24954014	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-106125.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.0	5.07	6.47	6.07	4.67	0.0	9.51	4.86	3.75
Merged-chr3-84050429-1	chr3	84049929	84050929	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10268.0	NM_172681	229473.0	Mm.28838	NM_172681	ENSMUSG00000033767	Tmem131l	D930015E06Rik|Kiaa0922|mKIAA0922	transmembrane 131 like	protein-coding	5.15	6.45	1.85	3.37	2.33	0.0	1.06	3.98	1.25
Merged-chr15-96729248-2	chr15	96728759	96729759	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29531.0	NM_175121	67760.0	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	8.58	11.52	1.85	4.05	8.86	3.22	10.56	5.75	0.62
Merged-chr4-140688495-1	chr4	140687995	140688995	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12978.0	NM_173867	108911.0	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	4.0	2.3	2.77	2.02	1.4	3.22	2.11	1.77	5.0
Merged-chr7-99071411-1	chr7	99070911	99071911	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178635, intron 5 of 14)	L1_Mus4|LINE|L1	69733.0	NM_178635	78610.0	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	5.15	0.92	6.47	2.7	4.67	2.41	15.84	4.86	4.37
Merged-chr18-11692973-1	chr18	11692473	11693473	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081223, intron 4 of 18)	intron (NM_001081223, intron 4 of 18)	35624.0	NM_001081223	225182.0	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8, endonuclease	protein-coding	20.59	23.5	6.47	0.67	3.27	1.61	24.29	19.9	14.36
Merged-chrX-169804675-1	chrX	169804175	169805175	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290512, intron 2 of 9)	intron (NM_001290512, intron 2 of 9)	-23484.0	NM_001290504	17318.0	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	2.29	5.99	5.55	0.67	6.06	3.22	7.39	9.73	8.74
Merged-chr8-94381397-1	chr8	94380897	94381897	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-5032.0	NM_001357205	64209.0	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	1.14	5.53	0.92	4.05	1.4	1.61	4.22	0.88	1.25
Merged-chr19-7493474-1	chr19	7492974	7493974	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146091)	promoter-TSS (NM_146091)	-566.0	NM_001163505	109168.0	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	34.9	52.07	37.92	51.95	34.06	38.58	51.75	49.96	24.98
Merged-chr17-45685441-1	chr17	45684941	45685941	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026732)	promoter-TSS (NM_026732)	777.0	NM_198167	224807.0	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	14.3	10.14	10.17	9.45	14.46	12.06	25.35	16.36	1.87
Merged-chr1-157503151-1	chr1	157502651	157503651	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-3645.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	5.72	10.6	5.55	10.12	6.06	8.04	6.34	7.07	12.49
Merged-chr9-32636185-1	chr9	32635685	32636685	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-59857.0	NM_011808	23871.0	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	4.0	1.38	0.0	3.37	1.4	2.41	3.17	0.44	1.25
Merged-chr8-61664461-1	chr8	61663961	61664961	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001293772, intron 10 of 21)	intron (NM_001293772, intron 10 of 21)	-73292.0	NM_001293774	72333.0	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	16.59	7.37	9.25	8.1	9.33	16.08	6.34	7.07	6.25
Merged-chr5-139075313-1	chr5	139074813	139075813	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359099, intron 4 of 10)	intron (NM_001359099, intron 4 of 10)	54439.0	NM_008923	19085.0	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	2.86	1.38	5.55	3.37	1.87	0.0	4.22	0.88	3.75
Merged-chr8-70352876-1	chr8	70352376	70353376	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001122829, exon 1 of 24)	exon (NM_001122829, exon 1 of 24)	403.0	NM_030680	19704.0	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	131.0	81.1	93.42	115.38	86.3	96.45	126.74	49.52	76.19
Merged-chr17-34958216-1	chr17	34957716	34958716	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010478, exon 1 of 1)	exon (NM_010478, exon 1 of 1)	1022.0	NM_010478	15511.0	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	5.72	2.76	0.0	4.72	2.33	0.0	8.45	0.88	0.0
Merged-chr16-31194068-1	chr16	31193568	31194568	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030138, intron 1 of 22)	Tigger7|DNA|TcMar-Tigger	7170.0	NM_030138	78618.0	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	14.87	19.35	21.27	22.94	28.92	9.65	26.4	18.13	10.62
Merged-chr9-106160285-1	chr9	106159785	106160785	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-2147.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	360.39	492.12	308.01	328.59	463.24	280.52	305.24	335.6	166.75
Merged-chr10-13851870-1	chr10	13851370	13852370	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025446, intron 1 of 5)	L2|LINE|L2	17087.0	NM_025446	66253.0	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	5.15	1.84	5.55	6.07	3.27	8.04	1.06	2.65	5.0
Merged-chr4-138435228-1	chr4	138434728	138435728	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026689, intron 1 of 3)	intron (NM_026689, intron 1 of 3)	556.0	NM_026689	68350.0	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	154.45	124.87	84.17	128.2	111.5	103.69	209.12	183.06	93.68
Merged-chrX-51204823-1	chrX	51204323	51205323	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134163, intron 1 of 7)	CpG	1167.0	NM_001310515	171170.0	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind like splicing factor 3	protein-coding	1.14	0.46	3.7	1.35	0.47	3.22	0.0	0.0	2.5
Merged-chr11-103142478-1	chr11	103141978	103142978	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9119.0	NM_027658	71059.0	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	19.45	13.82	21.27	12.82	9.8	24.11	10.56	6.63	7.49
Merged-chr4-12023893-1	chr4	12023393	12024393	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57319.0	NR_040577	100503636.0	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	1.72	3.23	0.0	2.02	1.87	0.0	2.11	2.21	5.0
Merged-chr11-44408769-1	chr11	44408269	44409269	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303244, intron 4 of 7)	intron (NM_001303244, intron 4 of 7)	8706.0	NM_001303244	16160.0	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	5.72	5.99	3.7	8.77	8.4	1.61	11.62	2.65	6.25
Merged-chr9-42473606-1	chr9	42473106	42474106	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-1348.0	NM_173038	272589.0	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	10.3	6.45	0.0	5.4	6.06	6.43	2.11	0.44	3.75
Merged-chr3-65943983-1	chr3	65943483	65944483	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14266.0	NM_019937	56706.0	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	14.3	14.75	12.02	14.84	19.13	13.66	25.35	14.59	14.99
Merged-chr9-62488811-1	chr9	62488311	62489311	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175484, intron 2 of 11)	intron (NM_175484, intron 2 of 11)	48233.0	NM_175484	235431.0	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	4.0	1.38	1.85	6.07	3.73	1.61	5.28	2.21	1.25
Merged-chr7-89371112-1	chr7	89370612	89371612	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 1 of 14)	intron (NM_001360746, intron 1 of 14)	-32325.0	NM_001360745	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	4.58	3.69	3.7	6.75	3.27	4.82	2.11	4.42	1.25
Merged-chr11-78399847-1	chr11	78399347	78400347	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_022411, intron 9 of 11)	intron (NM_022411, intron 9 of 11)	5362.0	NR_003282	790911.0	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	2.86	1.38	0.92	4.05	1.87	6.43	1.06	2.21	3.75
Merged-chr2-165070510-1	chr2	165070010	165071010	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_027852, intron 7 of 7)	intron (NR_027852, intron 7 of 7)	14874.0	NM_011611	21939.0	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	5.72	2.3	0.92	1.35	0.93	0.0	2.11	0.88	6.25
Merged-chr11-49271470-1	chr11	49270970	49271970	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8680.0	NM_146471	258463.0	Mm.377517	NM_146471	ENSMUSG00000059864	Olfr1393	MOR256-24	olfactory receptor 1393	protein-coding	1.14	2.76	0.0	2.7	1.87	4.82	2.11	0.44	2.5
Merged-chr17-24140915-1	chr17	24140415	24141415	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	679.0	NM_011062	18607.0	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	89.24	48.84	69.37	65.45	48.98	50.64	82.38	45.54	38.1
Merged-chr3-22062141-1	chr3	22061641	22062641	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14511.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.58	2.3	5.55	2.7	0.93	0.0	3.17	6.63	2.5
Merged-chr19-40728408-1	chr19	40727908	40728908	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001304721, intron 7 of 9)	intron (NM_001304721, intron 7 of 9)	68638.0	NM_009848	12495.0	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	11.44	7.83	8.32	14.84	8.4	6.43	9.51	5.75	6.25
Merged-chr11-77318926-1	chr11	77318426	77319426	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 1 of 14)	RMER6A|LTR|ERVK	-29354.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	12.01	15.21	14.8	14.84	11.66	16.88	17.96	14.15	17.49
Merged-chr5-34782002-1	chr5	34781502	34782502	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010414, intron 1 of 66)	intron (NM_010414, intron 1 of 66)	20262.0	NM_010414	15194.0	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	10.3	11.06	20.35	8.1	12.6	16.08	32.74	27.41	19.36
Merged-chr1-72317103-1	chr1	72316603	72317603	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357519, intron 5 of 20)	intron (NM_001357519, intron 5 of 20)	9682.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	8.01	7.37	0.0	8.77	4.2	9.65	5.28	3.98	5.0
Merged-chr4-10976816-1	chr4	10976316	10977316	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	30803.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	38.33	40.09	40.7	32.39	21.46	20.9	69.71	73.4	36.85
Merged-chr17-67614599-1	chr17	67614099	67615099	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155516, intron 2 of 2)	intron (NR_155516, intron 2 of 2)	14733.0	NR_155516	102640031.0	Mm.421441	NR_155516		Gm36201	-	predicted gene, 36201	ncRNA	1.72	4.15	3.7	2.7	1.4	3.22	1.06	1.33	3.75
Merged-chr7-44359083-1	chr7	44358583	44359583	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_027049)	TTS (NM_027049)	15947.0	NM_027049	69349.0	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	9.72	11.06	12.02	12.82	8.86	8.04	15.84	11.5	13.74
Merged-chr17-65845569-1	chr17	65845069	65846069	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	39354.0	NM_001198949	19765.0	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	10.3	5.53	7.4	7.42	5.13	6.43	4.22	2.21	5.0
Merged-chr17-84185775-1	chr17	84185275	84186275	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001001806, exon 2 of 2)	exon (NM_001001806, exon 2 of 2)	2172.0	NM_001001806	12193.0	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	32.61	53.91	38.85	31.71	52.25	61.09	103.51	62.79	61.83
Merged-chr13-52818958-1	chr13	52818458	52819458	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-61753.0	NR_027893	105404.0	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	1.14	0.46	3.7	5.4	4.2	8.84	1.06	3.54	2.5
Merged-chr6-122720113-1	chr6	122719613	122720613	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	12548.0	NM_001289828	71950.0	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	2.86	1.38	3.7	8.1	4.2	0.8	4.22	2.65	2.5
Merged-chr7-64281688-1	chr7	64281188	64282188	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-5982.0	NM_172742	233315.0	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	8.58	5.99	7.4	4.72	2.8	2.41	2.11	6.63	5.0
Merged-chr12-111670128-1	chr12	111669628	111670628	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021273, intron 6 of 7)	intron (NM_021273, intron 6 of 7)	2210.0	NM_021273	12709.0	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|CPK-B|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	108.12	104.14	89.72	64.1	56.91	69.93	76.05	85.34	63.08
Merged-chr5-54040779-1	chr5	54040279	54041279	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081103, intron 1 of 11)	intron (NM_001081103, intron 1 of 11)	42256.0	NM_001081103	116873.0	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	8.58	6.45	7.4	10.12	8.86	12.06	11.62	9.29	13.12
Merged-chr5-100719557-1	chr5	100719057	100720057	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_152803, exon 1 of 12)	exon (NM_152803, exon 1 of 12)	159.0	NM_152803	15442.0	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	2.29	2.76	3.7	6.07	2.33	2.41	2.11	4.42	2.5
Merged-chr13-91163436-1	chr13	91162936	91163936	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_025770, intron 2 of 7)	intron (NM_025770, intron 2 of 7)	60551.0	NM_025770	66795.0	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	1.72	5.53	1.85	0.0	2.33	4.82	1.06	0.0	1.25
Merged-chr9-53717633-1	chr9	53717133	53718133	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11401.0	NM_175562	270160.0	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	6.29	8.29	2.77	3.37	3.27	0.0	7.39	5.75	1.87
Merged-chr11-100720426-1	chr11	100719926	100720926	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001305003, intron 1 of 5)	intron (NM_001305003, intron 1 of 5)	6576.0	NM_029307	75482.0	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	33.18	32.72	53.65	35.09	26.59	36.17	35.91	39.35	30.6
Merged-chr8-19162209-1	chr8	19161709	19162709	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4322.0	NM_153115	78128.0	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	35.47	41.01	14.8	24.29	39.65	27.33	82.38	79.59	26.85
Merged-chr4-139158498-1	chr4	139157998	139158998	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	22157.0	NR_033543	100038595.0	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	-	predicted gene 16287	ncRNA	9.15	5.53	1.85	14.84	5.13	19.29	12.67	3.98	5.62
Merged-chr13-101844627-1	chr13	101844127	101845127	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76410.0	NM_001077495	18708.0	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	34.9	43.31	19.42	35.76	38.72	42.6	48.58	39.35	23.73
Merged-chr11-29753127-1	chr11	29752627	29753627	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_146016, exon 34 of 42)	exon (NM_146016, exon 34 of 42)	34564.0	NM_024226	68585.0	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	8.01	1.84	10.17	4.72	1.87	8.84	0.0	3.1	3.75
Merged-chr3-133545993-1	chr3	133545493	133546493	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1603.0	NM_001346736	214133.0	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	45.19	41.93	36.07	41.16	22.39	35.37	27.46	24.76	34.35
Merged-chr18-67798172-1	chr18	67797672	67798672	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045376, intron 1 of 3)	intron (NR_045376, intron 1 of 3)	1771.0	NR_045376	75286.0	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	13.73	15.21	19.42	13.49	8.4	23.31	26.4	23.88	17.49
Merged-chr13-102663642-1	chr13	102663142	102664142	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-29905.0	NM_001360519	17079.0	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	17.16	17.97	10.17	12.82	7.93	8.84	14.79	22.99	17.49
Merged-chr17-34107652-1	chr17	34107152	34108152	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	12248.0	NR_037970	14312.0	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	19.45	4.61	9.25	3.37	1.87	4.02	5.28	4.42	3.75
Merged-chr16-3733395-1	chr16	3732895	3733895	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER10B|LTR|ERVL	-10704.0	NM_148924	74120.0	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	9.72	14.75	19.42	29.01	27.52	35.37	31.69	32.72	26.23
Merged-chr10-19549667-1	chr10	19549167	19550167	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-42282.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	18.88	23.96	29.6	24.29	18.66	43.4	24.29	28.3	30.6
Merged-chr8-110672286-1	chr8	110671786	110672786	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151674, intron 13 of 18)	intron (NR_151674, intron 13 of 18)	-49190.0	NM_198625	244654.0	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	8.58	10.14	17.57	3.37	6.53	4.82	6.34	3.98	0.62
Merged-chr8-94983973-1	chr8	94983473	94984473	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_018882)	promoter-TSS (NM_018882)	-426.0	NM_018882	14766.0	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	6.86	0.92	0.0	4.05	0.0	2.41	4.22	0.88	5.62
Merged-chr6-82039390-1	chr6	82038890	82039890	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2238.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	6.29	2.3	7.4	8.77	1.4	0.8	0.0	0.0	6.87
Merged-chr17-5672796-1	chr17	5672296	5673296	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146073, intron 2 of 8)	intron (NM_146073, intron 2 of 8)	-125861.0	NR_045081	78512.0	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	3.43	4.61	7.4	2.02	6.06	3.22	4.22	4.86	1.25
Merged-chr19-11447436-1	chr19	11446936	11447936	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021718, intron 1 of 6)	intron (NM_021718, intron 1 of 6)	3878.0	NM_021718	60361.0	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	14.87	17.05	14.8	15.52	18.19	16.08	13.73	19.46	21.23
Merged-chr19-37530216-1	chr19	37529716	37530716	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-20202.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.15	5.99	3.7	1.35	3.73	1.61	4.22	0.44	3.12
Merged-chr6-125622653-1	chr6	125622153	125623153	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011708, intron 18 of 51)	intron (NM_011708, intron 18 of 51)	-67766.0	NM_153589	243634.0	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	2.86	0.92	1.85	6.75	3.27	1.61	3.17	0.44	3.75
Merged-chr7-97799723-1	chr7	97799223	97800223	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357364, intron 1 of 14)	RMER15|LTR|ERVL	11182.0	NM_001357364	18479.0	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 (RAC1) activated kinase 1	protein-coding	42.33	44.24	26.82	35.09	24.26	55.46	73.93	87.99	53.71
Merged-chr17-26243002-1	chr17	26242502	26243502	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001206335, intron 1 of 12)	intron (NM_001206335, intron 1 of 12)	1240.0	NM_207217	106581.0	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	156.17	133.63	104.52	129.55	67.18	111.73	181.66	187.92	76.82
Merged-chr7-100848902-1	chr7	100848402	100849402	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001358914, intron 6 of 10)	intron (NM_001358914, intron 6 of 10)	14511.0	NM_001358914	320100.0	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	9.72	7.37	5.55	4.72	4.67	3.22	5.28	2.65	5.0
Merged-chr5-121188414-1	chr5	121187914	121188914	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011202, intron 1 of 15)	intron (NM_011202, intron 1 of 15)	2983.0	NM_001109992	19247.0	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	6.86	5.53	5.55	3.37	6.06	3.22	6.34	3.98	3.75
Merged-chr1-118553242-1	chr1	118552742	118553742	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359330, intron 30 of 39)	intron (NM_001359330, intron 30 of 39)	-74703.0	NM_023755	81879.0	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	4.58	3.69	3.7	7.42	1.4	0.0	12.67	2.21	2.5
Merged-chr19-43679333-1	chr19	43678833	43679833	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Charlie2b|DNA|hAT-Charlie	4155.0	NR_045645	100502982.0	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	59.49	81.1	73.07	72.87	52.25	68.32	54.92	54.83	60.58
Merged-chr11-82959895-1	chr11	82959395	82960395	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183201, intron 4 of 5)	RLTR30|LTR|ERV1	786.0	NR_045932	76392.0	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	11.44	7.37	14.8	5.4	2.33	6.43	7.39	2.21	0.0
Merged-chr10-17510451-1	chr10	17509951	17510951	+	553.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-212777.0	NM_010828	17684.0	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	37.18	33.18	18.5	10.8	13.53	6.43	32.74	42.45	11.87
Merged-chr4-34269855-1	chr4	34269355	34270355	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-219788.0	NM_026293	67652.0	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	18.88	27.19	17.57	10.8	12.6	27.33	15.84	11.5	12.49
Merged-chr19-56747479-1	chr19	56746979	56747979	+	553.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	25107.0	NM_007419	11554.0	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	87.52	81.1	100.82	96.48	84.9	120.57	113.01	108.33	91.18
Merged-chr11-76856749-1	chr11	76856249	76857249	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9741.0	NM_007754	12874.0	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	6.29	6.91	16.65	16.19	7.93	9.65	5.28	1.33	8.74
Merged-chr15-59776046-1	chr15	59775546	59776546	+	553.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18913.0	NR_045076	100503021.0	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	4.0	3.69	1.85	7.42	2.8	4.82	10.56	0.88	7.49
Merged-chr7-49471558-1	chr7	49471058	49472058	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175272, intron 10 of 37)	intron (NM_175272, intron 10 of 37)	165277.0	NM_001005232	13172.0	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	6.29	3.69	3.7	0.67	1.87	0.0	2.11	1.33	1.25
Merged-chr4-134638116-2	chr4	134637593	134638593	+	552.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_207237, intron 2 of 11)	intron (NM_207237, intron 2 of 11)	66197.0	NM_207237	230815.0	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	29.75	11.06	24.05	8.77	7.93	13.66	11.62	4.42	9.99
Merged-chr13-21509073-2	chr13	21508574	21509574	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2550.0	NR_026798	100038371.0	Mm.133328	NR_026798		Zfp389	-	zinc finger protein 389	pseudo	4.0	3.23	1.85	1.35	4.67	1.61	6.34	3.98	1.87
Merged-chr14-57548756-1	chr14	57548256	57549256	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_026526)	TTS (NM_026526)	22813.0	NM_026526	68043.0	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	EEF1A alpha lysine methyltransferase 1	protein-coding	1.72	2.76	0.0	9.45	5.6	0.0	3.17	1.77	5.0
Merged-chr1-135369053-2	chr1	135368554	135369554	+	552.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_053106)	TTS (NM_053106)	6009.0	NM_175259	77552.0	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	13.73	5.53	1.85	6.07	3.27	4.02	4.22	6.63	3.75
Merged-chr17-43267596-1	chr17	43267096	43268096	+	552.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2751.0	NM_133776	77596.0	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.0	2.3	0.0	12.82	4.67	0.0	6.34	3.98	2.5
Merged-chr1-40306328-1	chr1	40305828	40306828	+	552.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001123382, intron 8 of 10)	RLTR17|LTR|ERVK	-18261.0	NM_001356478	107527.0	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	7.44	2.76	4.62	4.72	2.8	3.22	3.17	1.33	2.5
Merged-chr18-82866972-1	chr18	82866472	82867472	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11075.0	NR_125720	73985.0	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	18.88	18.89	19.42	12.82	12.13	16.88	26.4	16.36	15.61
Merged-chr17-51783853-1	chr17	51783353	51784353	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357637, intron 6 of 10)	intron (NM_001357637, intron 6 of 10)	28201.0	NM_001163630	20230.0	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	4.58	5.99	7.4	5.4	2.8	4.02	7.39	2.65	3.12
Merged-chr6-122873968-1	chr6	122873468	122874468	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026267)	promoter-TSS (NM_026267)	-589.0	NM_026267	67602.0	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	127.0	188.46	152.62	129.55	117.56	194.52	157.37	179.96	123.03
Merged-chr11-90697984-1	chr11	90697484	90698484	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-10383.0	NM_001357543	71943.0	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	1.72	2.76	0.0	0.67	1.4	1.61	1.06	2.21	4.37
Merged-chr1-77329809-1	chr1	77329309	77330309	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	166959.0	NR_105770	102465180.0		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	5.15	6.91	3.7	3.37	10.26	4.82	3.17	5.31	3.75
Merged-chr18-76160081-1	chr18	76159581	76160581	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-10471.0	NR_105776	102465184.0		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.0	2.3	0.0	0.0	0.93	0.0	3.17	1.33	1.25
Merged-chr2-45019204-1	chr2	45018704	45019704	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 3 of 9)	intron (NM_001355291, intron 3 of 9)	3973.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	34.32	23.5	19.42	24.29	25.19	15.27	33.8	22.99	19.98
Merged-chr1-169673689-1	chr1	169673189	169674189	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313705, intron 1 of 3)	intron (NM_001313705, intron 1 of 3)	18188.0	NM_009063	19737.0	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	8.01	3.69	3.7	2.7	2.33	4.82	2.11	0.88	1.25
Merged-chr14-25402626-1	chr14	25402126	25403126	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56559.0	NM_001310666	328365.0	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	32.04	27.19	20.35	30.36	19.13	61.09	38.02	19.01	16.86
Merged-chr3-13712192-1	chr3	13711692	13712692	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357034, intron 1 of 7)	CT-rich|Low_complexity|Low_complexity	-59327.0	NR_040598	75203.0	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	6.29	3.23	3.7	3.37	1.87	4.82	5.28	4.86	2.5
Merged-chr1-133146181-1	chr1	133145681	133146681	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15015.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	5.15	6.45	1.85	6.07	1.87	1.61	3.17	2.65	5.0
Merged-chr6-133904735-1	chr6	133904235	133905235	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-51068.0	NM_010594	16483.0	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	4.58	5.07	0.0	2.7	0.93	4.02	2.11	1.33	3.75
Merged-chr1-150015526-1	chr1	150015026	150016026	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-54236.0	NM_008869	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	9.72	16.13	22.2	17.54	15.39	20.9	22.18	13.71	16.86
Merged-chr8-109681663-1	chr8	109681163	109682163	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_155034, intron 4 of 10)	MTB_Mm|LTR|ERVL-MaLR	11631.0	NR_155034	71955.0	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	78.94	80.64	68.45	76.24	78.37	71.54	82.38	57.04	54.33
Merged-chr10-96605372-2	chr10	96604863	96605863	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11638.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	7.44	3.69	0.0	6.07	0.93	3.22	3.17	1.77	6.87
Merged-chr2-167382503-1	chr2	167382003	167383003	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-33325.0	NM_019835	56336.0	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	17.16	7.83	13.87	19.57	14.0	13.66	13.73	7.52	4.37
Merged-chr4-18098292-1	chr4	18097792	18098792	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019724, intron 7 of 9)	intron (NM_019724, intron 7 of 9)	244834.0	NM_019724	17389.0	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	4.0	5.99	5.55	8.1	7.0	6.43	2.11	3.1	3.75
Merged-chr13-73620875-1	chr13	73620375	73621375	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_146047)	TTS (NM_146047)	-6036.0	NM_001362387	21752.0	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	4.58	4.61	3.7	4.72	0.93	6.43	4.22	0.0	6.87
Merged-chr5-140162753-1	chr5	140162253	140163253	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152617, intron 11 of 16)	ORR1E|LTR|ERVL-MaLR	12165.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.0	2.76	0.0	9.45	2.33	4.02	6.34	1.33	8.12
Merged-chr1-133382215-1	chr1	133381715	133382715	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_011439)	TTS (NM_011439)	18643.0	NM_175443	214253.0	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	2.86	1.84	1.85	2.7	0.93	4.02	0.0	1.33	2.5
Merged-chr1-16746109-1	chr1	16745609	16746609	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	57653.0	NM_001159711	17087.0	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	6.86	4.61	3.7	10.12	3.27	8.04	3.17	4.42	5.0
Merged-chr8-68368768-1	chr8	68368268	68369268	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_038181, intron 1 of 3)	MER63A|DNA|hAT-Blackjack	309.0	NR_038181	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	2.29	5.07	3.7	2.7	1.4	6.43	2.11	1.77	0.0
Merged-chr13-56429273-1	chr13	56428773	56429773	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-9082.0	NM_177809	328258.0	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.57	2.76	3.7	2.7	0.47	0.0	3.17	1.33	1.25
Merged-chr9-97307954-1	chr9	97307454	97308454	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	62004.0	NM_030219	78911.0	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	6.86	5.07	2.77	5.4	4.2	3.22	2.11	2.21	6.25
Merged-chr10-127598700-1	chr10	127598200	127599200	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008512, intron 6 of 88)	intron (NM_008512, intron 6 of 88)	22448.0	NM_008512	16971.0	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	143.59	152.98	117.47	170.03	105.9	185.68	145.75	161.83	105.55
Merged-chr18-34878599-1	chr18	34878099	34879099	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	17392.0	NM_007913	13653.0	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	4.58	3.23	1.85	4.05	1.87	0.0	4.22	2.65	0.0
Merged-chr6-35148187-1	chr6	35147687	35148687	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C2|LTR|ERVL-MaLR	-14450.0	NM_001164414	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	1.72	5.53	1.85	1.35	4.2	9.65	1.06	0.88	3.75
Merged-chr14-40935325-1	chr14	40934825	40935825	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_145928, intron 1 of 8)	intron (NM_145928, intron 1 of 8)	12884.0	NM_001316748	52588.0	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	23.45	23.5	19.42	29.01	30.32	40.99	16.9	12.82	16.86
Merged-chr6-8028533-1	chr6	8028033	8029033	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	164084.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	31.46	23.04	14.8	2.02	4.67	1.61	6.34	1.77	5.0
Merged-chr16-52040185-1	chr16	52039685	52040685	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033238, intron 2 of 17)	intron (NM_001033238, intron 2 of 17)	8636.0	NM_001033238	208650.0	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.15	13.36	2.77	5.4	13.06	13.66	9.51	3.98	9.99
Merged-chr10-37342944-1	chr10	37342444	37343444	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1K|LTR|ERVL-MaLR	-204018.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	18.88	13.36	18.5	16.87	11.2	14.47	17.96	7.07	13.12
Merged-chr14-73132816-1	chr14	73132316	73133316	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1J|LTR|ERVL-MaLR	-9694.0	NM_001170694	105670.0	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	9.15	3.69	5.55	10.12	3.27	3.22	5.28	5.31	0.0
Merged-chr7-64077237-1	chr7	64076737	64077737	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-76598.0	NM_001039104	17364.0	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	1.72	1.84	1.85	2.02	3.73	4.82	4.22	4.42	5.0
Merged-chr8-77482205-1	chr8	77481705	77482705	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030113, intron 1 of 22)	intron (NM_030113, intron 1 of 22)	-34851.0	NR_028125	70345.0	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	5.15	1.84	3.7	14.17	5.13	9.65	3.17	3.54	1.25
Merged-chr6-134240584-1	chr6	134240084	134241084	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 5 of 8)	intron (NM_001303102, intron 5 of 8)	-155745.0	NM_025778	66813.0	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	5.15	4.61	7.4	6.07	1.4	8.04	6.34	0.0	3.75
Merged-chr8-119813989-1	chr8	119813489	119814489	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028071, intron 3 of 3)	intron (NM_028071, intron 3 of 3)	26590.0	NM_028071	72042.0	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	61.78	50.69	41.62	78.27	48.52	50.64	80.27	70.3	44.97
Merged-chr1-57574716-1	chr1	57574216	57575216	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-168042.0	NM_001302963	68736.0	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	6.86	5.07	3.7	6.75	4.2	10.45	7.39	1.77	1.87
Merged-chr7-44140637-1	chr7	44140137	44141137	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008454, exon 3 of 5)	exon (NM_008454, exon 3 of 5)	3347.0	NM_008454	16615.0	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	2.29	2.76	1.85	1.35	1.4	3.22	2.11	0.88	2.5
Merged-chr2-158080029-1	chr2	158079529	158080529	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040609, intron 3 of 3)	intron (NR_040609, intron 3 of 3)	11768.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.29	3.23	1.85	7.42	1.87	3.22	0.0	2.65	7.49
Merged-chr8-126901907-1	chr8	126901407	126902407	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44014.0	NM_024214	67952.0	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20	protein-coding	10.87	11.52	7.4	14.17	7.46	2.41	14.79	10.17	3.75
Merged-chr19-5819742-1	chr19	5819242	5820242	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17070.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	15.45	13.36	17.57	13.49	7.46	7.23	32.74	15.92	14.36
Merged-chr8-12711910-1	chr8	12711410	12712410	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_033546, intron 3 of 3)	MTE2a|LTR|ERVL-MaLR	7217.0	NR_033546	100038554.0	Mm.367723	NR_033546	ENSMUSG00000074469	Gm15348	-	predicted gene 15348	ncRNA	3.43	1.84	8.32	6.07	3.27	4.82	3.17	0.88	9.99
Merged-chr15-79928970-1	chr15	79928470	79929470	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144811, intron 2 of 6)	intron (NM_144811, intron 2 of 6)	3676.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	17.16	20.74	22.2	14.84	8.4	20.9	15.84	19.46	23.73
Merged-chr7-104218133-1	chr7	104217633	104218633	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013616)	promoter-TSS (NM_001013616)	-662.0	NM_001013616	94088.0	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	2.86	2.76	3.7	0.67	2.8	6.43	4.22	2.21	3.75
Merged-chr6-122969311-1	chr6	122968811	122969811	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153197, intron 5 of 5)	intron (NM_153197, intron 5 of 5)	16667.0	NM_153197	73149.0	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	2.86	3.23	7.4	2.02	3.73	3.22	3.17	5.75	3.75
Merged-chr3-19515713-1	chr3	19515213	19516213	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025489, intron 1 of 4)	intron (NM_025489, intron 1 of 4)	7118.0	NM_025489	66326.0	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	2.86	2.76	4.62	4.72	1.4	0.0	5.28	1.33	3.75
Merged-chr9-68888900-1	chr9	68888400	68889400	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	123554.0	NR_033299	320440.0	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	4.0	3.23	0.0	7.42	0.93	3.22	3.17	1.77	1.25
Merged-chr6-54715899-1	chr6	54715399	54716399	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	34275.0	NM_001289740	68235.0	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	4.58	5.53	5.55	9.45	7.93	3.22	3.17	4.42	3.75
Merged-chr16-32837011-1	chr16	32836511	32837511	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172615, intron 8 of 18)	intron (NM_172615, intron 8 of 18)	-26565.0	NM_001256309	381043.0	Mm.303864	NM_001256309	ENSMUSG00000094430	Smbd1	Gm1743|Gm933	somatomedin B domain containing 1	protein-coding	10.87	6.45	12.95	9.45	9.33	12.06	8.45	8.84	7.49
Merged-chr8-10373253-1	chr8	10372753	10373753	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001319151, intron 7 of 34)	intron (NM_001319151, intron 7 of 34)	219342.0	NM_001319151	244281.0	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	4.0	1.38	0.0	4.05	3.73	0.0	3.17	1.33	1.87
Merged-chr11-22872467-1	chr11	22871967	22872967	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12131.0	NM_001169114	53625.0	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	77.8	74.65	53.65	72.19	62.05	63.5	76.05	58.81	50.59
Merged-chr11-115247363-1	chr11	115246863	115247863	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001033393)	TTS (NM_001033393)	19880.0	NM_010350	14813.0	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	2.29	0.92	0.0	8.1	2.33	1.61	7.39	2.65	1.25
Merged-chrX-23709866-1	chrX	23709366	23710366	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175180, intron 1 of 19)	intron (NM_175180, intron 1 of 19)	16815.0	NM_001305675	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	26.89	28.57	38.85	33.74	24.26	15.27	27.46	30.07	24.98
Merged-chr6-128318566-1	chr6	128318066	128319066	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-17753.0	NM_011567	21679.0	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	3.43	1.84	1.85	2.7	0.0	1.61	1.06	0.0	0.62
Merged-chr12-110499390-1	chr12	110498890	110499890	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081457, intron 1 of 12)	intron (NM_001081457, intron 1 of 12)	13651.0	NM_012023	26931.0	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	6.86	9.22	13.87	30.36	20.06	40.99	25.35	22.99	11.24
Merged-chr10-127633353-1	chr10	127632853	127633853	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9633.0	NM_009284	20852.0	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	24.03	29.49	11.1	30.36	16.79	16.88	27.46	8.4	19.98
Merged-chr7-132551427-1	chr7	132550927	132551927	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	24971.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	6.29	5.53	3.7	6.07	5.13	4.82	6.34	6.19	2.5
Merged-chr1-9944976-1	chr1	9944476	9945476	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NR_024067)	promoter-TSS (NR_024067)	-858.0	NR_024067	73824.0	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	31.46	47.92	25.9	25.64	27.06	34.56	64.43	59.69	35.6
Merged-chrX-77740971-1	chrX	77740471	77741471	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	54989.0	NM_016979	19108.0	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	1.14	3.23	3.7	2.7	3.27	4.02	5.28	7.52	2.5
Merged-chr17-29371485-1	chr17	29370985	29371985	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001159538, intron 9 of 15)	intron (NM_001159538, intron 9 of 15)	10571.0	NM_001159538	26382.0	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	22.31	17.51	17.57	20.24	6.53	9.65	16.9	4.86	14.99
Merged-chr8-11575698-1	chr8	11575198	11576198	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17288.0	NM_001302459	26356.0	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	5.72	3.23	5.55	2.7	5.13	0.0	4.22	2.65	1.25
Merged-chr9-109876336-1	chr9	109875836	109876836	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007658, intron 1 of 14)	CpG	757.0	NM_007658	12530.0	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	60.07	61.28	71.22	68.15	58.78	67.52	42.25	36.26	31.23
Merged-chr5-92493652-1	chr5	92493152	92494152	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007644, intron 1 of 11)	intron (NM_007644, intron 1 of 11)	12005.0	NM_007644	12492.0	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	19.45	15.21	12.02	17.54	24.72	29.74	19.01	17.24	21.23
Merged-chr15-76294325-1	chr15	76293825	76294825	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001195537)	promoter-TSS (NM_001195537)	-109.0	NM_001195537	100503915.0	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	30.89	17.51	26.82	33.74	37.79	40.99	36.97	21.67	27.48
Merged-chr1-140531695-1	chr1	140531195	140532195	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081027, intron 20 of 27)	intron (NM_001081027, intron 20 of 27)	124707.0	NR_040604	75910.0	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.57	4.61	0.0	1.35	2.8	3.22	7.39	5.75	0.0
Merged-chr7-143459770-1	chr7	143459270	143460270	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001354981, intron 2 of 3)	CpG-13764	1280.0	NM_009876	12577.0	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	3.43	0.92	1.85	0.67	2.33	0.0	2.11	0.0	1.87
Merged-chr6-113342654-1	chr6	113342154	113343154	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	1268.0	NM_133926	52163.0	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	46.34	31.33	38.85	62.07	42.45	56.27	27.46	28.74	34.35
Merged-chr13-11907035-1	chr13	11906535	11907535	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023868, intron 3 of 104)	intron (NM_023868, intron 3 of 104)	199910.0	NM_023868	20191.0	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	6.86	4.15	10.17	4.05	4.67	3.22	11.62	7.07	11.87
Merged-chr7-4656076-1	chr7	4655576	4656576	+	552.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	2874.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	32.61	50.69	35.15	24.29	11.66	27.33	40.14	35.82	34.97
Merged-chr16-44777702-1	chr16	44777202	44778202	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021325, intron 1 of 6)	intron (NM_021325, intron 1 of 6)	11966.0	NM_021325	57781.0	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	34.9	70.96	51.8	74.89	61.58	52.25	51.75	38.47	27.48
Merged-chr18-34955264-1	chr18	34954764	34955764	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010481)	promoter-TSS (NM_010481)	-913.0	NM_010481	15526.0	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	251.7	249.75	152.62	248.3	224.39	208.18	211.24	239.65	111.17
Merged-chr13-115130187-1	chr13	115129687	115130687	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-28223.0	NM_001033228	109700.0	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	4.0	1.38	7.4	4.05	6.06	6.43	6.34	6.63	6.25
Merged-chr2-150903779-1	chr2	150903279	150904279	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356549, intron 1 of 13)	intron (NM_001356549, intron 1 of 13)	952.0	NM_024465	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	57.78	74.65	49.02	51.28	73.24	55.46	54.92	49.08	35.6
Merged-chr12-36363809-1	chr12	36363309	36364309	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17641.0	NM_001289504	75847.0	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	9.72	6.91	12.95	7.42	5.6	6.43	23.24	12.38	12.49
Merged-chr12-111745852-1	chr12	111745352	111746352	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163388, intron 4 of 5)	RSINE1|SINE|B4	-12997.0	NM_001361612	16593.0	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	13.73	12.9	26.82	8.1	12.6	22.51	15.84	19.9	24.98
Merged-chr2-148764265-1	chr2	148763765	148764765	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7232.0	NM_030059	78240.0	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	5.15	3.23	0.0	0.0	6.53	1.61	2.11	5.75	5.62
Merged-chr7-89235499-1	chr7	89234999	89235999	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360746, intron 5 of 14)	intron (NM_001360746, intron 5 of 14)	103288.0	NM_028343	72759.0	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.72	12.9	9.25	14.84	13.53	12.86	4.22	7.96	6.25
Merged-chr15-33356959-1	chr15	33356459	33357459	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_176073, intron 4 of 7)	intron (NM_176073, intron 4 of 7)	48980.0	NR_033608	73486.0	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	2.86	3.69	0.0	3.37	5.6	6.43	1.06	4.86	4.37
Merged-chr1-150395831-1	chr1	150395331	150396331	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_133780, intron 3 of 51)	RMER6B|LTR|ERVK	-2751.0	NM_001357579	226499.0	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	21.17	17.05	35.15	13.49	13.53	18.49	17.96	8.84	14.99
Merged-chr11-52064553-1	chr11	52064053	52065053	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	B3|SINE|B2	-34271.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	13.16	13.36	8.32	9.45	5.13	8.04	9.51	17.69	13.12
Merged-chr10-85387306-1	chr10	85386806	85387806	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	5' UTR (NM_028709, exon 1 of 17)	5' UTR (NM_028709, exon 1 of 17)	492.0	NM_028709	74007.0	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.0	0.46	3.7	0.67	0.93	3.22	73.93	57.04	32.48
Merged-chr14-120359793-1	chr14	120359293	120360293	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360376, intron 2 of 8)	intron (NM_001360376, intron 2 of 8)	53341.0	NM_001360376	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	8.58	7.37	0.0	8.77	10.26	14.47	7.39	6.63	5.62
Merged-chr10-80927771-1	chr10	80927271	80928271	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-2320.0	NM_008655	17873.0	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	9.72	9.22	11.1	9.45	6.06	4.82	15.84	22.99	7.49
Merged-chr2-157838899-1	chr2	157838399	157839399	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-75754.0	NM_198627	277432.0	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	34.9	29.03	25.9	23.62	20.53	34.56	6.34	11.05	11.24
Merged-chr14-70028567-1	chr14	70028067	70029067	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_028560, intron 4 of 6)	intron (NM_028560, intron 4 of 6)	-48878.0	NM_018781	13655.0	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	6.86	5.07	5.55	0.67	1.87	4.82	5.28	5.75	3.75
Merged-chr4-144977285-1	chr4	144976785	144977785	+	552.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001276465, intron 68 of 69)	intron (NM_001276465, intron 68 of 69)	84148.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.15	2.76	10.17	4.05	3.27	0.0	4.22	2.65	3.12
Merged-chr15-78848496-1	chr15	78847996	78848996	+	552.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027219, intron 2 of 2)	B1_Mur2|SINE|Alu	5849.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	4.0	2.76	1.85	3.37	1.4	3.22	7.39	0.44	0.0
Merged-chr13-99186409-2	chr13	99185934	99186934	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004149, intron 1 of 4)	intron (NM_001004149, intron 1 of 4)	1611.0	NM_001004149	238803.0	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	106.97	120.73	85.1	95.81	85.37	56.27	176.38	205.17	81.19
Merged-chr9-108632079-1	chr9	108631579	108632579	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357286, intron 3 of 16)	intron (NM_001357286, intron 3 of 16)	17329.0	NM_011790	23807.0	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	5.15	4.15	5.55	8.1	7.46	4.82	3.17	3.54	5.62
Merged-chr4-11008590-1	chr4	11008090	11009090	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_175175)	promoter-TSS (NM_175175)	-971.0	NM_175175	71801.0	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	96.11	135.47	97.12	94.46	142.29	103.69	107.73	146.36	61.83
Merged-chr5-151021023-1	chr5	151020523	151021523	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68416.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.57	0.0	2.77	0.67	6.53	1.61	5.28	5.31	6.25
Merged-chr13-3743877-1	chr13	3743377	3744377	+	551.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	60441.0	NM_027416	70405.0	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	9.15	5.53	5.55	10.8	5.13	9.65	2.11	1.33	1.87
Merged-chr6-108873961-1	chr6	108873461	108874461	+	551.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER54B|LTR|ERVL	45320.0	NM_138677	192193.0	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	9.15	5.07	9.25	5.4	5.13	8.04	2.11	3.54	1.25
Merged-chr2-118746739-2	chr2	118746233	118747233	+	551.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001301269, exon 1 of 1)	3' UTR (NM_001301269, exon 1 of 1)	975.0	NM_001301269	100043272.0	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik	InaF motif containing 2	protein-coding	11.44	7.83	12.95	10.12	10.26	7.23	12.67	3.98	11.24
Merged-chrX-23556543-1	chrX	23556043	23557043	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-136508.0	NM_175180	72404.0	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	5.72	1.38	5.55	4.72	3.27	0.0	2.11	3.98	5.0
Merged-chr17-23200102-1	chr17	23199602	23200602	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6850.0	NM_001357697	22700.0	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	3.43	1.84	1.85	2.02	2.33	1.61	1.06	1.77	0.0
Merged-chr12-100277116-1	chr12	100276616	100277616	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045741, intron 1 of 3)	intron (NR_045741, intron 1 of 3)	507.0	NR_045741	100038713.0	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	10.87	8.29	5.55	5.4	1.87	4.82	5.28	3.1	4.37
Merged-chr7-81225197-1	chr7	81224697	81225697	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008803, intron 1 of 21)	B4A|SINE|B4	11393.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	14.3	14.28	14.8	12.82	12.6	12.86	14.79	7.52	11.24
Merged-chr4-3793369-1	chr4	3792869	3793869	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	42286.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	8.01	3.23	0.0	0.0	3.27	5.63	3.17	4.42	6.25
Merged-chr13-52042727-1	chr13	52042227	52043227	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54014.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	84.66	82.02	50.87	95.81	68.11	99.67	84.49	81.8	74.32
Merged-chr3-148226645-1	chr3	148226145	148227145	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	727990.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.57	5.07	12.95	4.72	3.73	4.82	1.06	1.33	0.0
Merged-chr7-126883909-1	chr7	126883409	126884409	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	1058.0	NM_001163775	381921.0	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	13.73	19.35	32.37	16.87	22.86	26.53	25.35	11.05	28.1
Merged-chr9-113645715-1	chr9	113645215	113646215	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-58563.0	NR_040760	102688.0	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	3.43	2.76	5.55	2.02	5.13	0.0	4.22	0.44	7.49
Merged-chr5-5551359-1	chr5	5550859	5551859	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153116, intron 4 of 9)	L1_Rod|LINE|L1	8182.0	NM_153116	207704.0	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	5.15	2.76	11.1	6.75	5.13	16.08	12.67	5.31	9.37
Merged-chr19-34612915-1	chr19	34612415	34613415	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001005858, exon 2 of 2)	3' UTR (NM_001005858, exon 2 of 2)	4958.0	NM_001005858	667370.0	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	8.01	19.81	11.1	10.12	13.06	24.92	24.29	19.46	16.24
Merged-chr4-124682455-1	chr4	124681955	124682955	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026031, exon 5 of 8)	exon (NM_026031, exon 5 of 8)	11099.0	NM_026031	67205.0	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11	2700082D03Rik|CGI-94|Cgi94|Utp11l	UTP11 small subunit processome component	protein-coding	2.29	4.61	3.7	3.37	0.93	4.02	4.22	5.75	1.25
Merged-chr17-47454842-2	chr17	47454352	47455352	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145489, intron 2 of 4)	intron (NM_145489, intron 2 of 4)	-17477.0	NM_029296	75462.0	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	6.86	3.23	13.87	6.07	5.13	4.82	8.45	4.42	9.99
Merged-chr15-83038271-1	chr15	83037771	83038771	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4874.0	NM_001271411	74039.0	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	10.3	2.76	8.32	8.1	2.8	8.04	9.51	6.19	5.0
Merged-chr15-60855258-1	chr15	60854758	60855758	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30178.0	NM_001162926	399603.0	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	3.43	10.14	3.7	10.8	7.0	4.02	3.17	1.77	7.49
Merged-chr10-99468203-1	chr10	99467703	99468703	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-140968.0	NR_038019	100504202.0	Mm.403801	NR_038019	ENSMUSG00000111962	Gm20110	-	predicted gene, 20110	ncRNA	112.69	109.67	61.97	103.23	73.71	74.75	84.49	102.14	73.69
Merged-chr10-80589584-1	chr10	80589084	80590084	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145421, intron 1 of 4)	RSINE1|SINE|B4	757.0	NM_145421	216169.0	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	46.34	52.53	46.25	37.78	37.32	42.6	44.36	52.18	43.09
Merged-chr15-78754277-1	chr15	78753777	78754777	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	19168.0	NM_008595	17305.0	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	8.01	5.07	9.25	15.52	15.39	6.43	4.22	1.77	2.5
Merged-chr5-110269306-1	chr5	110268806	110269806	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028273, intron 1 of 5)	intron (NM_028273, intron 1 of 5)	593.0	NM_028273	72542.0	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	33.18	26.73	51.8	35.76	39.19	39.39	43.3	25.2	25.61
Merged-chr19-16067462-2	chr19	16066944	16067944	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-65387.0	NM_008139	14682.0	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	22.31	24.88	17.57	20.24	10.73	21.7	31.69	24.76	9.99
Merged-chr11-8662988-1	chr11	8662488	8663488	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083587, intron 1 of 30)	MIR|SINE|MIR	1547.0	NM_001083587	319939.0	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	26.31	22.12	19.42	35.09	29.86	24.11	36.97	20.78	12.49
Merged-chr17-81544652-1	chr17	81544152	81545152	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104580, intron 2 of 8)	intron (NR_104580, intron 2 of 8)	193735.0	NM_001286684	20541.0	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.43	4.61	0.92	6.07	4.67	3.22	1.06	7.07	8.74
Merged-chr8-88244499-2	chr8	88243993	88244993	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164499, intron 3 of 11)	intron (NM_001164499, intron 3 of 11)	-27910.0	NM_007406	11513.0	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	2.86	2.3	5.55	4.72	1.4	8.04	1.06	1.33	1.87
Merged-chr2-18987748-1	chr2	18987248	18988248	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008845, intron 1 of 9)	RMER4B|LTR|ERVK	10373.0	NM_008845	18718.0	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	15.45	20.74	5.55	11.47	7.46	6.43	7.39	3.54	4.37
Merged-chr8-94343452-1	chr8	94342952	94343952	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019415, intron 13 of 24)	intron (NM_019415, intron 13 of 24)	14244.0	NM_001205311	20497.0	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	10.87	3.69	0.0	4.05	0.93	3.22	6.34	5.31	5.62
Merged-chr6-52919250-1	chr6	52918750	52919750	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-9630.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.86	2.3	0.0	3.37	4.2	0.0	6.34	4.86	3.75
Merged-chr1-37473526-1	chr1	37473026	37474026	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173870, intron 5 of 15)	L1M3b|LINE|L1	15079.0	NR_024017	77633.0	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	101.25	118.42	81.4	120.77	90.04	118.16	156.32	140.17	110.54
Merged-chr2-165328968-1	chr2	165328468	165329468	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2489.0	NM_207706	140579.0	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	10.87	6.91	7.4	10.8	5.13	8.84	10.56	7.96	11.87
Merged-chr3-68691325-1	chr3	68690825	68691825	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_008351)	promoter-TSS (NM_008351)	-99.0	NM_008351	16159.0	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	3.43	2.76	1.85	4.05	2.8	4.02	3.17	0.88	5.0
Merged-chr2-160364593-1	chr2	160364093	160365093	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010658, exon 1 of 1)	3' UTR (NM_010658, exon 1 of 1)	2472.0	NM_010658	16658.0	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	73.79	92.62	50.87	66.8	77.91	79.58	125.69	68.54	43.09
Merged-chr15-62120963-1	chr15	62120463	62121463	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	81706.0	NR_132746	19296.0	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	Pvt1 oncogene	ncRNA	7.44	5.99	11.1	8.77	6.53	3.22	10.56	4.86	13.12
Merged-chr7-101343365-1	chr7	101342865	101343865	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019990, intron 4 of 6)	intron (NM_019990, intron 4 of 6)	-4704.0	NM_001040111	69710.0	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	2.86	0.46	1.85	3.37	0.93	4.82	3.17	0.44	3.75
Merged-chr2-128966728-1	chr2	128966228	128967228	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-674.0	NM_178404	78751.0	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	108.12	88.01	69.37	136.97	142.29	94.04	127.8	122.48	63.08
Merged-chr7-81851838-1	chr7	81851338	81852338	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7163.0	NR_111910	107769.0	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	15.45	11.06	24.97	14.17	14.93	17.68	12.67	13.27	19.36
Merged-chr10-9715847-1	chr10	9715347	9716347	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31125.0	NR_038036	620417.0	Mm.378085	NR_038036	ENSMUSG00000111901	Gm6150	-	predicted gene 6150	ncRNA	3.43	4.15	3.7	11.47	3.27	0.8	4.22	4.86	3.12
Merged-chr6-89268443-1	chr6	89267943	89268943	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17282.0	NR_131021	75131.0	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	Gm44205	RIKEN cDNA 4930512J16 gene	ncRNA	4.0	0.92	7.4	2.7	4.67	4.02	5.28	0.44	3.75
Merged-chr12-86768021-1	chr12	86767521	86768521	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	33652.0	NM_001195767	627607.0	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	2.86	1.38	1.85	2.7	0.47	0.8	2.11	0.0	5.0
Merged-chr13-52034584-1	chr13	52034084	52035084	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-62157.0	NR_045061	74050.0	Mm.84860	NR_045061	ENSMUSG00000113211	4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	48.05	60.36	50.87	41.16	44.78	57.87	105.62	82.24	48.71
Merged-chr17-17590650-1	chr17	17590150	17591150	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172827, intron 1 of 17)	MTA_Mm|LTR|ERVL-MaLR	33839.0	NM_172827	240028.0	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	24.6	30.41	16.65	20.92	22.39	23.31	49.64	25.2	17.49
Merged-chr11-94391105-1	chr11	94390605	94391605	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	1871.0	NM_029600	76408.0	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	45.76	73.73	23.12	85.01	89.1	93.24	76.05	109.22	40.59
Merged-chr5-130360117-1	chr5	130359617	130360617	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR42-int|LTR|ERVK	-9341.0	NM_181045	140904.0	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.58	4.15	3.7	8.1	2.8	6.43	4.22	2.65	6.25
Merged-chr6-33682063-1	chr6	33681563	33682563	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009148, intron 10 of 17)	intron (NM_009148, intron 10 of 17)	-347385.0	NM_028886	74354.0	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	2.29	2.3	0.92	4.05	3.73	3.22	2.11	4.86	3.75
Merged-chr10-127521907-1	chr10	127521407	127522407	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028230, intron 1 of 11)	intron (NM_028230, intron 1 of 11)	537.0	NM_001252316	108037.0	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903|SHMT	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	17.73	5.53	10.17	12.82	8.4	15.27	15.84	5.75	9.37
Merged-chr14-30693870-1	chr14	30693370	30694370	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20979.0	NM_019460	54650.0	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	7.44	2.76	11.1	2.7	0.93	7.23	5.28	3.1	5.0
Merged-chr6-67016706-1	chr6	67016206	67017206	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177558, intron 4 of 4)	intron (NM_001177558, intron 4 of 4)	-19893.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	4.58	3.23	7.4	6.07	6.53	4.82	2.11	5.31	7.49
Merged-chr2-155811930-1	chr2	155811430	155812430	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010808, intron 6 of 8)	intron (NM_010808, intron 6 of 8)	7273.0	NR_015528	613262.0	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.57	2.3	0.0	2.7	1.87	3.22	6.34	1.77	6.25
Merged-chr6-67036127-2	chr6	67035637	67036637	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_040278)	promoter-TSS (NR_040278)	-462.0	NR_040278	320172.0	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	12.59	12.9	17.57	12.82	12.13	5.63	7.39	7.52	7.49
Merged-chr11-105562650-1	chr11	105562150	105563150	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27336.0	NM_181071	77097.0	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	9.72	10.6	12.95	6.75	9.33	9.65	7.39	8.4	1.25
Merged-chr4-126199940-1	chr4	126199440	126200440	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356455, intron 1 of 11)	intron (NM_001356455, intron 1 of 11)	1067.0	NM_001356456	230753.0	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	20.02	23.5	31.45	9.45	8.86	6.43	30.63	32.72	10.62
Merged-chr4-119847785-1	chr4	119847285	119848285	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	33107.0	NM_010657	16656.0	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	9.15	6.45	6.47	6.75	0.47	4.82	1.06	3.1	2.5
Merged-chrX-140663734-1	chrX	140663234	140664234	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011845)	promoter-TSS (NM_011845)	-778.0	NM_011845	23947.0	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	1.72	3.23	0.0	1.35	1.4	0.0	1.06	1.77	2.5
Merged-chr3-138605316-1	chr3	138604816	138605816	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	78048.0	NM_001313980	13684.0	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	4.58	4.15	12.02	0.67	2.8	0.8	2.11	3.54	4.37
Merged-chr13-32904666-1	chr13	32904166	32905166	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-6526.0	NM_173051	380839.0	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	6.29	7.37	7.4	2.02	1.87	4.82	4.22	4.86	7.49
Merged-chr1-39547425-1	chr1	39546925	39547925	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028043)	TTS (NM_028043)	1415.0	NR_028555	100217461.0		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	7.44	13.82	3.7	5.4	12.13	18.49	10.56	8.84	11.24
Merged-chr6-50374863-1	chr6	50374363	50375363	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001163645, intron 2 of 21)	intron (NM_001163645, intron 2 of 21)	7974.0	NM_027881	71720.0	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	18.31	24.42	17.57	6.75	7.46	6.43	19.01	22.11	12.49
Merged-chr6-8029893-1	chr6	8029393	8030393	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 27 of 34)	intron (NM_001037865, intron 27 of 34)	162724.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	16.59	24.88	33.3	1.35	1.4	4.82	2.11	5.75	5.0
Merged-chr3-149092819-1	chr3	149092319	149093319	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-138184.0	NM_001081298	99633.0	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.43	5.07	2.77	1.35	6.06	6.43	2.11	0.88	3.75
Merged-chr10-17295385-1	chr10	17294885	17295885	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-199603.0	NR_038020	100504235.0	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	7.44	3.23	0.92	5.4	4.67	3.22	3.17	4.86	3.75
Merged-chr15-88145795-1	chr15	88145295	88146295	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-169079.0	NR_045281	328579.0	Mm.146839	NR_045281	ENSMUSG00000116331	B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	10.3	20.74	11.1	21.59	22.86	34.56	0.0	0.44	3.75
Merged-chr9-95072191-1	chr9	95071691	95072691	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177909, intron 12 of 15)	ORR1F|LTR|ERVL-MaLR	320362.0	NR_106116	102465763.0		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	16.02	20.74	21.27	18.89	13.53	26.53	19.01	11.05	23.73
Merged-chr8-123018595-1	chr8	123018095	123019095	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 1 of 12)	MLT1E1A|LTR|ERVL-MaLR	23689.0	NR_037865	77087.0	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	10.3	11.98	7.4	8.77	9.33	9.65	10.56	8.4	5.0
Merged-chr2-148874628-1	chr2	148874128	148875128	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009976, intron 1 of 2)	intron (NM_009976, intron 1 of 2)	884.0	NM_009976	13010.0	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	28.6	20.74	27.75	22.94	21.46	43.4	47.53	33.16	20.61
Merged-chr11-77346676-1	chr11	77346176	77347176	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-1604.0	NM_001291190	237860.0	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	9.72	13.36	19.42	29.01	10.26	20.09	25.35	20.78	13.12
Merged-chr2-15029162-1	chr2	15028662	15029662	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001165941, intron 8 of 11)	RLTR44B|LTR|ERVK	20150.0	NM_001165942	74455.0	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	1.72	2.3	3.7	3.37	4.67	3.22	9.51	7.96	0.0
Merged-chr15-84889587-1	chr15	84889087	84890087	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-33458.0	NR_030731	271305.0	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	1.72	0.92	0.0	2.02	1.87	1.61	4.22	3.1	3.75
Merged-chr4-59406175-1	chr4	59405675	59406675	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	32458.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	4.0	2.76	1.85	4.72	4.2	4.02	3.17	1.33	8.74
Merged-chr8-40496489-1	chr8	40495989	40496989	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_155265, intron 5 of 6)	intron (NR_155265, intron 5 of 6)	13990.0	NM_001361938	18983.0	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	12.59	15.67	16.65	10.12	17.26	12.86	9.51	3.54	7.49
Merged-chr13-19833211-1	chr13	19832711	19833711	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8954.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	11.44	17.97	18.5	6.07	10.26	11.25	9.51	2.65	19.98
Merged-chr2-49359009-1	chr2	49358509	49359509	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-92477.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	4.0	3.69	3.7	3.37	3.73	4.02	3.17	4.86	5.0
Merged-chr11-70174763-1	chr11	70174263	70175263	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	8140.0	NM_010796	17312.0	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	8.01	5.99	6.47	8.77	6.53	4.82	5.28	7.96	2.5
Merged-chr1-172530682-1	chr1	172530182	172531182	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027972, intron 3 of 11)	intron (NM_027972, intron 3 of 11)	9552.0	NM_027972	71870.0	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	5.15	2.3	5.55	2.02	2.33	6.43	7.39	6.19	9.99
Merged-chr6-54927076-1	chr6	54926576	54927576	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001171007, intron 11 of 11)	intron (NM_001171007, intron 11 of 11)	44585.0	NM_001171007	107607.0	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	8.58	3.69	8.32	4.72	5.13	1.61	6.34	4.86	11.87
Merged-chr15-75019699-1	chr15	75019199	75020199	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-21668.0	NM_010738	110454.0	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	1.14	0.92	0.0	2.7	0.0	1.61	4.22	1.77	0.62
Merged-chr16-49962425-1	chr16	49961925	49962925	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	6595.0	NR_153658	100503490.0	Mm.72499	NR_153658		Gm19723	-	predicted gene, 19723	ncRNA	2.86	1.84	1.85	9.45	3.73	1.61	1.06	2.65	3.75
Merged-chr15-99094097-1	chr15	99093597	99094597	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5387.0	NM_176835	72778.0	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	8.01	5.53	0.92	5.4	4.67	9.65	6.34	6.19	5.0
Merged-chr10-117873339-1	chr10	117872839	117873839	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-27365.0	NM_024457	215449.0	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	68.07	55.29	39.77	96.48	103.1	87.61	95.06	111.87	43.09
Merged-chr13-52624994-1	chr13	52624494	52625494	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011518, intron 7 of 13)	intron (NM_011518, intron 7 of 13)	28112.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	13.16	17.97	12.02	11.47	16.33	27.33	16.9	10.17	9.37
Merged-chr2-80617578-1	chr2	80617078	80618078	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_024438, exon 1 of 4)	exon (NM_024438, exon 1 of 4)	364.0	NM_024438	68082.0	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	7.44	4.61	14.8	10.8	10.26	12.86	19.01	11.94	6.25
Merged-chr6-52973476-1	chr6	52972976	52973976	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	-63856.0	NM_001168277	231986.0	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	2.29	5.53	0.0	2.7	2.8	7.23	5.28	1.33	6.25
Merged-chr2-91080330-1	chr2	91079830	91080830	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-10015.0	NM_001290765	68427.0	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	74.94	75.11	45.32	58.03	60.65	57.07	69.71	79.59	41.22
Merged-chr7-97311692-1	chr7	97311192	97312192	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177412, exon 9 of 10)	exon (NM_001177412, exon 9 of 10)	14272.0	NM_001177412	244144.0	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.15	3.23	3.7	3.37	0.93	3.22	3.17	5.31	3.12
Merged-chr11-98937195-1	chr11	98936695	98937695	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177302)	promoter-TSS (NM_001177302)	-501.0	NM_009024	19401.0	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	126.42	53.45	67.52	95.14	40.59	82.79	102.45	69.42	47.46
Merged-chr5-139370029-1	chr5	139369529	139370529	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_029768)	promoter-TSS (NR_029768)	-284.0	NR_029768	723898.0		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	46.34	35.48	43.47	37.11	36.85	38.58	40.14	45.1	34.97
Merged-chr13-52658657-1	chr13	52658157	52659157	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	61775.0	NM_011518	20963.0	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	4.58	1.84	0.0	5.4	0.47	1.61	3.17	2.21	1.25
Merged-chr6-113639739-1	chr6	113639239	113640239	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001113553, intron 1 of 11)	ID_B1|SINE|B4	1272.0	NM_001113553	108960.0	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	82.38	105.06	71.22	74.89	85.84	66.71	160.54	102.14	84.31
Merged-chr7-34676294-1	chr7	34675794	34676794	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175140, intron 3 of 3)	intron (NM_175140, intron 3 of 3)	-20785.0	NM_001360818	233107.0	Mm.76761	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	2.86	1.84	5.55	0.67	0.47	6.43	0.0	3.1	0.0
Merged-chr19-4305735-2	chr19	4305221	4306221	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_130863, intron 1 of 21)	CpG	501.0	NM_130863	110355.0	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	53.77	47.92	89.72	42.51	52.25	86.81	67.6	53.06	49.34
Merged-chr11-62127917-1	chr11	62127417	62128417	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029936, intron 2 of 12)	intron (NM_001029936, intron 2 of 12)	50893.0	NM_001029936	432572.0	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	1.14	3.23	1.85	5.4	1.4	0.0	3.17	6.19	4.37
Merged-chr11-52056393-1	chr11	52055893	52056893	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166654, intron 13 of 13)	RMER19B|LTR|ERVK	-42431.0	NM_019411	19052.0	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	2.86	2.76	8.32	6.07	1.87	8.84	1.06	1.77	1.25
Merged-chr4-152103014-1	chr4	152102514	152103514	+	551.0	./atac_peak_files/aj_kupffer_control_young.idr	non-coding (NR_104381, exon 4 of 22)	non-coding (NR_104381, exon 4 of 22)	6295.0	NM_001285999	269608.0	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	2.29	1.84	9.25	2.02	0.0	4.02	8.45	0.0	0.0
Merged-chr6-145987351-1	chr6	145986851	145987851	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	53229.0	NM_010656	16651.0	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	1.14	1.38	0.0	3.37	1.87	1.61	6.34	3.54	0.62
Merged-chr4-102605163-1	chr4	102604663	102605663	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001177980, exon 10 of 10)	exon (NM_001177980, exon 10 of 10)	15320.0	NM_001177981	18578.0	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	22.88	28.11	58.27	18.89	17.26	34.56	8.45	9.73	15.61
Merged-chr5-110417207-1	chr5	110416707	110417707	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001142642, intron 3 of 18)	intron (NM_001142642, intron 3 of 18)	-30080.0	NM_028596	381668.0	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	22.31	9.68	11.1	22.27	8.86	7.23	14.79	14.59	18.74
Merged-chr10-95841545-1	chr10	95841045	95842045	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-99118.0	NM_001001932	216238.0	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	9.72	1.84	1.85	5.4	4.67	9.65	11.62	7.96	3.75
Merged-chr11-105943700-1	chr11	105943200	105944200	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356374, intron 1 of 6)	intron (NM_001356374, intron 1 of 6)	787.0	NM_007805	13056.0	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	5.72	5.07	2.77	14.17	4.2	4.82	3.17	4.86	3.75
Merged-chr8-46871272-1	chr8	46870772	46871772	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Arthur1B|DNA|hAT-Tip100	-115615.0	NM_177304	320981.0	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	12.01	15.67	24.97	21.59	12.6	26.53	12.67	13.27	18.74
Merged-chr2-3657577-1	chr2	3657077	3658077	+	551.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-55881.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	94.96	89.39	48.1	95.14	47.12	96.45	91.89	101.7	63.7
Merged-chr19-53194281-1	chr19	53193781	53194781	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013758, intron 1 of 15)	intron (NM_013758, intron 1 of 15)	50284.0	NM_013758	27360.0	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.57	2.76	1.85	4.72	4.67	0.0	9.51	2.65	6.25
Merged-chr7-19173185-1	chr7	19172685	19173685	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3236.0	NM_001347582	72205.0	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	6.29	2.76	0.92	3.37	1.4	2.41	4.22	1.77	2.5
Merged-chr12-72664220-1	chr12	72663720	72664720	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025522, intron 1 of 6)	intron (NM_025522, intron 1 of 6)	608.0	NM_025522	66375.0	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	12.01	17.97	9.25	8.77	14.93	25.72	16.9	22.55	6.25
Merged-chr4-105267309-1	chr4	105266809	105267809	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	109962.0	NM_080555	67916.0	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.0	5.53	3.7	3.37	5.6	8.04	8.45	2.65	5.62
Merged-chr8-84069392-1	chr8	84068892	84069892	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009055, intron 1 of 20)	intron (NM_009055, intron 1 of 20)	2556.0	NM_009055	19724.0	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	113.84	131.78	104.52	130.9	113.83	157.54	90.83	121.6	68.07
Merged-chr16-64819284-1	chr16	64818784	64819784	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347245, intron 2 of 8)	MTC|LTR|ERVL-MaLR	32439.0	NM_001347245	72020.0	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	13.16	9.68	8.32	8.1	5.6	8.04	8.45	2.65	5.62
Merged-chr2-118729308-1	chr2	118728808	118729808	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290790)	promoter-TSS (NM_001290790)	-870.0	NM_001290790	18796.0	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	10.87	9.68	12.02	13.49	12.6	16.88	11.62	15.03	7.49
Merged-chr16-58299693-1	chr16	58299193	58300193	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-108842.0	NM_001356484	73379.0	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	2.86	1.84	1.85	3.37	3.27	0.0	2.11	3.1	5.62
Merged-chr14-57827608-1	chr14	57827108	57828108	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_026401, exon 2 of 2)	3' UTR (NM_026401, exon 2 of 2)	1369.0	NM_026401	67840.0	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	8.01	10.6	11.1	9.45	10.73	16.88	19.01	20.34	18.11
Merged-chr4-84837098-1	chr4	84836598	84837598	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47211.0	NM_175275	338349.0	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	6.86	4.61	0.0	4.72	5.13	6.43	2.11	0.0	2.5
Merged-chr3-27605872-1	chr3	27605372	27606372	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-20877.0	NR_037275	100526525.0		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	2.86	6.91	7.4	5.4	4.67	6.43	8.45	7.07	5.62
Merged-chr16-20324132-1	chr16	20323632	20324632	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183158, intron 1 of 8)	intron (NM_183158, intron 1 of 8)	1272.0	NM_183158	224044.0	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	2.29	3.23	5.55	3.37	4.2	6.43	2.11	1.77	3.75
Merged-chr2-80038159-1	chr2	80037659	80038659	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355141, intron 2 of 15)	intron (NM_001355141, intron 2 of 15)	743.0	NM_001355142	18573.0	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	5.15	2.3	1.85	1.35	3.73	12.86	2.11	4.42	2.5
Merged-chr1-128463749-1	chr1	128463249	128464249	+	551.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46333.0	NM_145507	226414.0	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	4.58	3.69	6.47	4.72	0.47	3.22	3.17	2.21	1.25
Merged-chr10-127512095-2	chr10	127511602	127512602	+	550.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	CpG	-2837.0	NM_001098789	407790.0	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	9.72	3.23	5.55	3.37	2.33	4.82	3.17	0.88	1.25
Merged-chr2-11508747-2	chr2	11508253	11509253	+	550.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001177758, intron 1 of 14)	intron (NM_001177758, intron 1 of 14)	-6663.0	NM_001177757	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.15	4.15	4.62	6.07	3.73	12.06	3.17	2.21	3.75
Merged-chr1-167392959-1	chr1	167392459	167393459	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025569, intron 1 of 5)	intron (NM_025569, intron 1 of 5)	838.0	NM_025569	66447.0	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	10.3	4.15	3.7	8.77	7.0	1.61	11.62	5.31	7.49
Merged-chr14-13966708-2	chr14	13966186	13967186	+	550.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4834.0	NM_001359901	66231.0	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	7.44	2.76	11.1	7.42	2.33	5.63	5.28	1.77	6.25
Merged-chr5-90247824-2	chr5	90247316	90248316	+	550.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198010, intron 27 of 32)	ORR1A2-int|LTR|ERVL-MaLR	-23820.0	NM_001163456	231430.0	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	21.17	29.03	30.52	35.76	20.99	43.4	43.3	37.58	31.85
Merged-chr13-12204610-2	chr13	12204094	12205094	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081128, intron 24 of 32)	intron (NM_001081128, intron 24 of 32)	-18106.0	NR_045170	328186.0	Mm.188154	NM_183202		Gm10336	B330003H21	predicted gene 10336	ncRNA	6.29	5.99	9.25	8.77	4.2	6.43	1.06	0.88	11.24
Merged-chr19-45436257-1	chr19	45435757	45436757	+	550.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360127, intron 2 of 13)	intron (NM_001360127, intron 2 of 13)	72523.0	NM_001360126	12234.0	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	2.29	3.69	3.7	3.37	0.93	0.0	3.17	2.65	11.24
Merged-chr11-98545987-1	chr11	98545487	98546487	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011771)	promoter-TSS (NM_011771)	44.0	NM_011771	22780.0	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	7.44	4.15	0.0	5.4	6.06	3.22	5.28	1.33	0.0
Merged-chr6-51939272-1	chr6	51938772	51939772	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018773, intron 4 of 12)	intron (NM_018773, intron 4 of 12)	73277.0	NM_018773	54353.0	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	5.72	4.61	9.25	2.02	0.93	9.65	3.17	9.29	8.74
Merged-chr10-93178045-1	chr10	93177545	93178545	+	550.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	MER110A|LTR|ERV1	15260.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	21.74	17.51	12.02	24.29	14.93	25.72	24.29	14.15	9.37
Merged-chr11-79252520-1	chr11	79252020	79253020	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019653, intron 1 of 8)	intron (NM_019653, intron 1 of 8)	2175.0	NM_019653	78889.0	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	47.48	39.63	20.35	35.76	39.65	31.35	70.76	49.96	21.86
Merged-chr6-32480955-1	chr6	32480455	32481455	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-30186.0	NR_040277	319849.0	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	34.32	38.71	51.8	59.38	38.72	56.27	28.52	37.58	22.48
Merged-chr9-49111506-1	chr9	49111006	49112006	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_030709, exon 7 of 13)	exon (NM_030709, exon 7 of 13)	8727.0	NM_030709	80893.0	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	2.29	4.15	13.87	4.72	2.33	3.22	0.0	2.21	2.5
Merged-chr4-152134786-1	chr4	152134286	152135286	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_207689, intron 2 of 9)	intron (NM_207689, intron 2 of 9)	1539.0	NM_207689	56226.0	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	4.58	0.92	5.55	2.02	0.0	3.22	2.11	0.44	3.75
Merged-chr13-23724968-1	chr13	23724468	23725468	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER17A2|LTR|ERVK	-13839.0	NM_015786	50708.0	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	3.43	3.23	3.7	3.37	2.8	3.22	9.51	3.54	0.0
Merged-chr17-5422002-1	chr17	5421502	5422502	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-3235.0	NM_175349	106557.0	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.72	4.61	1.85	8.1	7.93	15.27	12.67	5.31	6.87
Merged-chr7-63755174-1	chr7	63754674	63755674	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161683.0	NM_001256311	381994.0	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.57	3.69	1.85	3.37	1.87	8.04	4.22	2.21	2.5
Merged-chr6-49214334-1	chr6	49213834	49214834	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_023670, exon 1 of 15)	exon (NM_023670, exon 1 of 15)	620.0	NM_023670	140488.0	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	4.0	1.38	5.55	2.7	0.0	1.61	7.39	2.21	2.5
Merged-chr1-131977955-1	chr1	131977455	131978455	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_145977, exon 3 of 5)	exon (NM_145977, exon 3 of 5)	7346.0	NM_145977	212980.0	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	29.17	50.23	61.97	41.16	48.98	61.89	48.58	44.22	30.6
Merged-chr1-85800006-1	chr1	85799506	85800506	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355046, intron 2 of 9)	intron (NM_001355046, intron 2 of 9)	5989.0	NM_001355047	12283.0	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	6.86	3.69	0.0	4.05	5.6	1.61	6.34	6.19	3.75
Merged-chr7-104370786-1	chr7	104370286	104371286	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	-12140.0	NM_175648	244183.0	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	53.77	71.88	65.67	70.17	61.58	74.75	52.81	64.11	35.6
Merged-chr8-47989902-1	chr8	47989402	47990402	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_133791, intron 1 of 22)	CpG	649.0	NM_133791	52357.0	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	53.77	47.0	27.75	66.12	54.11	57.87	95.06	45.99	47.46
Merged-chr13-41018545-1	chr13	41018045	41019045	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360770, intron 3 of 4)	intron (NM_001360770, intron 3 of 4)	2295.0	NM_001360770	66154.0	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	45.76	67.74	61.97	56.0	42.92	50.64	65.48	108.33	66.82
Merged-chr19-57375333-1	chr19	57374833	57375833	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145505, intron 5 of 16)	RLTR16B_MM|LTR|ERVK	14324.0	NM_145505	226252.0	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.57	5.07	7.4	3.37	3.73	6.43	7.39	1.77	2.5
Merged-chr6-48047946-1	chr6	48047446	48048446	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001347139)	promoter-TSS (NM_001347139)	-152.0	NM_001347139	72306.0	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	4.0	1.84	5.55	10.12	2.8	12.06	14.79	1.33	3.75
Merged-chr3-55152243-1	chr3	55151743	55152743	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177203, intron 4 of 7)	intron (NM_177203, intron 4 of 7)	10002.0	NR_110781	320604.0	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	2.86	4.15	4.62	1.35	4.2	6.43	2.11	1.33	2.5
Merged-chr2-58732467-2	chr2	58731938	58732938	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-22746.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.0	4.15	5.55	2.02	1.87	4.02	6.34	6.19	3.75
Merged-chr14-65167065-1	chr14	65166565	65167565	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-68959.0	NM_001360385	54616.0	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	3.43	1.84	3.7	0.0	3.27	1.61	4.22	2.65	2.5
Merged-chr3-87114151-1	chr3	87113651	87114651	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001170985, intron 2 of 15)	L1_Mus3|LINE|L1	60596.0	NM_001170985	170643.0	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	8.58	5.07	7.4	7.42	5.13	2.41	2.11	3.1	7.49
Merged-chr9-25104824-1	chr9	25104324	25105324	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46957.0	NM_020586	80517.0	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	4.58	3.69	0.92	1.35	3.73	4.82	4.22	1.77	6.25
Merged-chr7-102396093-1	chr7	102395593	102396593	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009287, intron 3 of 11)	L2a|LINE|L2	-45602.0	NM_009103	20133.0	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	21.74	15.67	26.82	16.87	22.39	20.9	12.67	13.27	14.99
Merged-chr11-53786532-1	chr11	53786032	53787032	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_033332, intron 3 of 3)	MTD|LTR|ERVL-MaLR	16059.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	8.01	9.22	8.32	12.82	4.2	9.65	22.18	22.55	18.11
Merged-chr16-4458166-1	chr16	4457666	4458666	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MB7|LINE|L1	-37668.0	NM_009624	11515.0	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	4.58	3.69	3.7	4.05	4.67	2.41	3.17	0.88	5.62
Merged-chr17-10606323-1	chr17	10605823	10606823	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	150107.0	NR_077238	319750.0	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	1.14	3.69	3.7	2.02	3.27	11.25	5.28	3.54	0.0
Merged-chr8-83699805-1	chr8	83699305	83700305	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_177262)	promoter-TSS (NM_177262)	-626.0	NM_177262	320795.0	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	40.04	44.24	38.85	56.0	34.52	40.19	64.43	55.71	23.11
Merged-chr17-15536444-1	chr17	15535944	15536944	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9143.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	6.29	3.23	4.62	3.37	4.2	1.61	5.28	5.75	3.75
Merged-chr11-121781986-1	chr11	121781486	121782486	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-48232.0	NM_029049	74675.0	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	2.86	2.3	3.7	6.07	5.13	3.22	9.51	1.33	3.75
Merged-chr10-80174336-1	chr10	80173836	80174836	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027207, intron 2 of 2)	intron (NM_027207, intron 2 of 2)	1392.0	NM_027207	69770.0	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	11.44	8.29	10.17	4.72	3.73	11.25	7.39	7.52	8.12
Merged-chr7-132828186-1	chr7	132827686	132828686	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347629, intron 3 of 3)	intron (NM_001347629, intron 3 of 3)	-14990.0	NM_212473	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	19.45	13.82	16.65	35.09	10.26	20.09	15.84	20.34	8.12
Merged-chr5-102045327-1	chr5	102044827	102045827	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172882, intron 1 of 66)	intron (NM_172882, intron 1 of 66)	24594.0	NM_172882	72145.0	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	29.17	32.25	28.67	41.16	34.06	50.64	48.58	57.48	43.72
Merged-chr19-58104766-1	chr19	58104266	58105266	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	53599.0	NR_049196	100885835.0		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	4.58	1.38	0.0	2.02	0.47	1.61	5.28	0.88	2.5
Merged-chr16-30184997-1	chr16	30184497	30185497	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	82535.0	NM_027904	71756.0	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	5.72	0.0	3.7	3.37	2.33	3.22	5.28	3.1	1.25
Merged-chr2-167702394-1	chr2	167701894	167702894	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11217.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	57.21	49.76	81.4	57.35	41.99	98.87	51.75	52.18	31.23
Merged-chr4-46137987-1	chr4	46137487	46138487	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033201)	promoter-TSS (NM_001033201)	488.0	NM_173033	272027.0	Mm.249594	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	77.8	77.87	53.65	54.65	69.04	77.97	83.44	74.28	43.09
Merged-chr4-33028410-1	chr4	33027910	33028910	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_036602, exon 2 of 2)	non-coding (NR_036602, exon 2 of 2)	2913.0	NR_036602	100504166.0	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	6.29	3.69	0.0	4.05	3.73	1.61	5.28	2.21	6.87
Merged-chr16-30447892-1	chr16	30447392	30448392	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-59362.0	NM_001128096	224088.0	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	1.14	2.3	5.55	6.07	4.2	3.22	12.67	7.96	6.25
Merged-chr16-11012922-1	chr16	11012422	11013422	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040518, intron 2 of 2)	intron (NR_040518, intron 2 of 2)	4024.0	NR_040518	100043147.0	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	7.44	14.28	7.4	4.72	14.0	7.23	10.56	10.61	5.0
Merged-chr8-45454436-1	chr8	45453936	45454936	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-43817.0	NM_126166	142980.0	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	3.43	3.23	0.0	3.37	0.93	1.61	2.11	1.77	2.5
Merged-chr18-75001292-1	chr18	75000792	75001792	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028552).2	TTS (NR_028552).2	224.0	NR_028552	100217457.0		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	189.92	168.19	145.22	159.23	124.09	122.98	190.11	179.52	119.91
Merged-chr7-27185166-1	chr7	27184666	27185666	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4017.0	NM_019394	12587.0	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	4.58	1.84	0.0	4.72	0.47	11.25	6.34	1.33	1.25
Merged-chr4-63557763-1	chr4	63557263	63558263	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001356354)	promoter-TSS (NM_001356354)	-1000.0	NM_001356355	230279.0	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	264.29	289.37	168.34	298.9	423.59	208.18	421.42	521.32	151.14
Merged-chr3-94758165-1	chr3	94757665	94758665	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	28350.0	NM_001293727	70737.0	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.57	0.0	0.0	0.67	0.0	0.0	1.06	0.88	0.0
Merged-chr15-39768411-1	chr15	39767911	39768911	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_022722)	TTS (NM_022722)	22481.0	NM_001289508	75766.0	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	5.72	1.84	0.0	4.05	3.27	7.23	9.51	7.52	1.25
Merged-chr14-95154832-1	chr14	95154332	95155332	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-726422.0	NM_001358241	66732.0	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	2.86	2.76	0.0	0.67	4.2	0.0	6.34	2.65	6.87
Merged-chr17-34130072-1	chr17	34129572	34130572	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360530, intron 1 of 5)	RMER19A|LTR|ERVK	4554.0	NM_001360530	14998.0	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	7.44	8.29	12.02	10.12	9.8	12.06	7.39	6.19	9.99
Merged-chr10-45058297-1	chr10	45057797	45058797	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR13D3|LTR|ERVK	-8917.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	2.86	11.52	14.8	8.77	6.53	3.22	8.45	6.19	8.12
Merged-chr19-53257334-1	chr19	53256834	53257834	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2129.0	NR_036590	69319.0	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.57	2.3	1.85	5.4	4.2	1.61	3.17	1.33	7.49
Merged-chr2-52420134-1	chr2	52419634	52420634	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_182994, intron 1 of 5)	intron (NM_182994, intron 1 of 5)	4740.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	12.01	12.9	5.55	7.42	4.67	9.65	8.45	10.17	12.49
Merged-chr1-144296500-1	chr1	144296000	144297000	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-47396.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	5.72	5.99	0.0	14.84	7.0	4.82	8.45	6.19	6.25
Merged-chr4-118143917-1	chr4	118143417	118144417	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172382, exon 18 of 19)	exon (NM_172382, exon 18 of 19)	-8971.0	NM_001161774	20441.0	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	62.35	60.36	77.7	64.77	68.11	74.75	78.16	65.44	52.46
Merged-chr2-144043104-1	chr2	144042604	144043604	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001044750, intron 1 of 2)	intron (NM_001044750, intron 1 of 2)	10002.0	NM_207275	403171.0	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	17.16	10.6	16.65	6.75	4.2	8.04	3.17	2.65	3.75
Merged-chr12-38845986-1	chr12	38845486	38846486	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347379, intron 7 of 11)	intron (NM_001347379, intron 7 of 11)	62275.0	NM_001163154	14009.0	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	4.58	6.91	5.55	8.77	12.13	6.43	7.39	2.21	6.25
Merged-chr1-36308781-1	chr1	36308281	36309281	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290727, intron 1 of 5)	intron (NM_001290727, intron 1 of 5)	1048.0	NM_001172205	214855.0	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	31.46	27.65	14.8	51.95	40.12	35.37	28.52	28.3	19.36
Merged-chr2-26559098-1	chr2	26558598	26559598	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21958.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	8.01	6.91	8.32	14.84	8.86	7.23	8.45	5.75	7.49
Merged-chr1-105992673-1	chr1	105992173	105993173	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122675, intron 1 of 12)	intron (NM_001122675, intron 1 of 12)	2267.0	NM_001122675	227449.0	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	130.43	201.82	119.32	131.57	169.81	89.22	198.56	225.06	89.93
Merged-chr6-46151831-1	chr6	46151331	46152331	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001004357, intron 8 of 23)	L1M5|LINE|L1	1091770.0	NM_001004357	66797.0	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	4.0	2.76	1.85	2.02	2.33	6.43	1.06	2.21	3.12
Merged-chr3-135607898-1	chr3	135607398	135608398	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008689, intron 13 of 24)	MER44A|DNA|TcMar-Tigger	83649.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	88.67	101.83	79.55	74.89	58.78	82.79	127.8	109.66	73.69
Merged-chr8-120740828-1	chr8	120740328	120741328	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001301811, intron 2 of 8)	intron (NM_001301811, intron 2 of 8)	2189.0	NM_001301811	15900.0	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	20.59	33.64	32.37	26.31	48.05	57.07	67.6	39.35	28.1
Merged-chr7-35741370-1	chr7	35740870	35741870	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178704, intron 3 of 18)	intron (NM_178704, intron 3 of 18)	13084.0	NM_178704	233115.0	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	50.91	59.9	70.3	47.9	43.85	70.73	5.28	0.0	6.25
Merged-chr13-77044579-1	chr13	77044079	77045079	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_134071, intron 20 of 20)	intron (NM_134071, intron 20 of 20)	90889.0	NM_134071	105377.0	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	18.88	15.21	16.65	24.29	13.53	9.65	3.17	2.65	5.0
Merged-chr2-173528149-1	chr2	173527649	173528649	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028158, intron 3 of 3)	intron (NM_028158, intron 3 of 3)	5557.0	NM_028158	72221.0	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	20.59	18.89	15.72	37.11	22.86	29.74	28.52	33.6	18.11
Merged-chr10-23522800-1	chr10	23522300	23523300	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-172857.0	NM_010167	14051.0	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	1.72	0.46	1.85	4.72	4.2	1.61	7.39	3.98	5.62
Merged-chr15-103375870-1	chr15	103375370	103376370	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-9079.0	NM_001314041	16402.0	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	8.01	3.69	8.32	4.05	2.8	5.63	1.06	2.21	11.24
Merged-chr7-25782831-1	chr7	25782331	25783331	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009465, intron 4 of 19)	intron (NM_009465, intron 4 of 19)	5902.0	NM_001190974	26362.0	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	15.45	10.6	15.72	17.54	8.86	32.96	34.85	20.34	29.98
Merged-chr10-51677735-1	chr10	51677235	51678235	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001159389)	promoter-TSS (NM_001159389)	-25.0	NM_001159389	320995.0	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	3.43	0.46	1.85	2.7	1.4	1.61	3.17	0.44	3.75
Merged-chr3-145950192-1	chr3	145949692	145950692	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12178.0	NR_151446	66421.0	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	2.86	2.76	4.62	1.35	1.4	1.61	3.17	1.77	1.25
Merged-chr9-95578636-1	chr9	95578136	95579136	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18819.0	NM_198414	75552.0	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	4.0	5.07	3.7	3.37	4.2	4.82	7.39	1.77	12.49
Merged-chr3-96730022-1	chr3	96729522	96730522	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026406, intron 1 of 8)	intron (NM_026406, intron 1 of 8)	2411.0	NM_026406	67845.0	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	18.88	29.03	11.1	20.92	16.33	8.04	31.69	30.95	26.85
Merged-chr4-132076891-1	chr4	132076391	132077391	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1578.0	NM_001128607	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	32.61	21.66	39.77	26.99	13.53	20.9	21.12	17.69	15.61
Merged-chr10-116849012-1	chr10	116848512	116849512	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033333, intron 4 of 24)	intron (NM_001033333, intron 4 of 24)	47867.0	NM_001033333	237558.0	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	1.14	3.69	1.85	5.4	2.8	0.0	1.06	1.77	1.25
Merged-chr8-119676594-1	chr8	119676094	119677094	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023395, intron 1 of 6)	intron (NM_023395, intron 1 of 6)	10229.0	NM_023395	67866.0	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	1.14	1.84	1.85	4.72	2.33	1.61	1.06	0.44	2.5
Merged-chr17-46484715-1	chr17	46484215	46485215	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162864, intron 1 of 14)	intron (NM_001162864, intron 1 of 14)	2960.0	NM_001162864	106763.0	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	4.58	3.69	2.77	4.05	1.4	3.22	1.06	0.44	0.0
Merged-chr8-122889573-1	chr8	122889073	122890073	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081379, intron 9 of 12)	intron (NM_001081379, intron 9 of 12)	41199.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	2.29	1.84	0.0	0.0	1.87	0.0	4.22	3.54	1.25
Merged-chr16-76325130-1	chr16	76324630	76325630	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358238, intron 3 of 3)	intron (NM_001358238, intron 3 of 3)	47919.0	NM_173440	268903.0	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	6.29	7.83	9.25	9.45	9.8	5.63	15.84	14.59	3.12
Merged-chr9-16267523-1	chr9	16267023	16268023	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001080814, intron 1 of 24)	intron (NM_001080814, intron 1 of 24)	110708.0	NM_001080814	270120.0	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.0	6.45	7.4	2.02	10.73	3.22	2.11	3.98	1.25
Merged-chr1-157382118-1	chr1	157381618	157382618	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177644, intron 1 of 17)	B4A|SINE|B4	-30234.0	NR_027984	69953.0	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	1.72	5.07	1.85	16.87	14.0	9.65	4.22	3.98	1.25
Merged-chr3-54013366-1	chr3	54012866	54013866	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER6B|LTR|ERVK	-142691.0	NM_001253683	22066.0	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.57	0.46	7.4	6.07	5.13	8.04	12.67	3.54	9.99
Merged-chr6-106441026-1	chr6	106440526	106441526	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109749, intron 8 of 25)	intron (NM_001109749, intron 8 of 25)	308011.0	NM_008370	16192.0	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	1.72	5.07	5.55	12.82	7.46	11.25	3.17	3.54	5.0
Merged-chr14-36937573-1	chr14	36937073	36938073	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027045, intron 3 of 10)	intron (NM_027045, intron 3 of 10)	-2005.0	NM_028407	72972.0	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	2.29	2.76	2.77	4.05	2.33	1.61	5.28	1.33	3.75
Merged-chr6-100192866-1	chr6	100192366	100193366	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	94492.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	4.0	2.76	1.85	4.72	0.0	4.02	0.0	1.77	6.87
Merged-chr7-49074624-1	chr7	49074124	49075124	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111016, intron 2 of 38)	intron (NM_001111016, intron 2 of 38)	87534.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	6.29	2.3	5.55	0.67	0.93	3.22	2.11	4.86	3.75
Merged-chr7-4657009-1	chr7	4656509	4657509	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172894, intron 1 of 23)	intron (NM_172894, intron 1 of 23)	1941.0	NM_172894	243819.0	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	30.32	46.08	43.47	16.19	11.66	26.53	20.07	23.88	39.35
Merged-chr1-53816118-1	chr1	53815618	53816618	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001001883, intron 28 of 28)	intron (NM_001001883, intron 28 of 28)	-30903.0	NM_133810	98267.0	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	42.33	48.84	28.67	55.33	35.45	62.7	55.98	45.54	29.35
Merged-chr4-59416597-1	chr4	59416097	59417097	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163288, intron 3 of 16)	intron (NM_001163288, intron 3 of 16)	22036.0	NM_001163288	634731.0	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528	sushi domain containing 1	protein-coding	16.02	6.45	15.72	16.19	9.33	6.43	13.73	6.63	7.49
Merged-chr15-73134704-1	chr15	73134204	73135204	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153178, intron 3 of 18)	MTD|LTR|ERVL-MaLR	44292.0	NM_053068	93696.0	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	14.3	14.28	10.17	4.72	14.93	16.08	9.51	14.15	26.23
Merged-chr12-3236388-1	chr12	3235888	3236888	+	550.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	597.0	NR_015551	74173.0	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	207.08	293.98	180.37	232.1	242.58	155.93	292.56	376.73	121.78
Merged-chr15-88828414-1	chr15	88827914	88828914	+	550.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	8768.0	NM_029720	76737.0	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	4.58	3.23	3.7	1.35	0.93	3.22	2.11	2.65	5.0
Merged-chr1-144292072-1	chr1	144291572	144292572	+	550.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1Md_T|LINE|L1	-42968.0	NM_015811	50778.0	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	2.86	7.83	1.85	2.02	1.4	1.61	6.34	4.42	3.75
Merged-chr8-125052244-2	chr8	125051759	125052759	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	ERVL-int|LTR|ERVL	-1936.0	NM_174853	244667.0	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	5.15	5.07	1.85	4.72	1.87	8.84	2.11	3.1	3.75
Merged-chrX-168824366-2	chrX	168823868	168824868	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009707, intron 1 of 12)	Lx2B2|LINE|L1	29269.0	NM_009707	11856.0	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	5.72	8.29	9.25	8.77	6.53	8.04	5.28	7.07	5.0
Merged-chr7-128400854-2	chr7	128400347	128401347	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026418, intron 3 of 4)	intron (NM_026418, intron 3 of 4)	17325.0	NM_026418	67865.0	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	17.73	13.36	26.82	14.84	9.8	32.15	19.01	15.03	24.36
Merged-chr2-104001245-2	chr2	104000729	104001729	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_175161, intron 3 of 4)	B2_Mm2|SINE|B2	-26570.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	4.58	2.76	0.0	4.72	0.47	0.0	4.22	1.33	3.75
Merged-chr4-126428533-1	chr4	126428033	126429033	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153402, intron 1 of 18)	intron (NM_153402, intron 1 of 18)	1009.0	NM_153402	214150.0	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	71.51	70.5	54.57	36.43	42.92	57.87	44.36	56.6	31.23
Merged-chr16-92413180-1	chr16	92412680	92413680	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	-13102.0	NM_019466	54720.0	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	62.35	61.28	73.07	72.87	45.25	69.13	46.47	42.45	53.71
Merged-chr19-7240480-2	chr19	7239996	7240996	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027643, intron 1 of 7)	intron (NM_027643, intron 1 of 7)	726.0	NM_027643	70999.0	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11|NatD	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	101.25	67.27	68.45	101.88	78.84	69.93	110.9	94.18	49.34
Merged-chr1-86154107-2	chr1	86153619	86154619	+	549.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001310702)	promoter-TSS (NM_001310702)	-661.0	NM_030184	78795.0	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	51.48	80.18	61.97	60.05	80.24	91.63	90.83	99.93	51.21
Merged-chr8-124844681-1	chr8	124844181	124845181	+	549.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	18348.0	NM_025615	66523.0	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	26.31	29.49	18.5	35.09	27.06	53.05	7.39	2.65	3.12
Merged-chr11-20166686-1	chr11	20166186	20167186	+	549.333313	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-34726.0	NM_008996	19324.0	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	1.72	5.53	0.0	2.02	0.93	0.0	3.17	2.65	5.0
Merged-chr2-49393571-1	chr2	49393071	49394071	+	549.333313	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-57915.0	NM_172663	227867.0	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2	protein-coding	12.59	6.45	7.4	7.42	5.6	20.9	4.22	4.42	7.49
Merged-chr9-48532492-1	chr9	48531992	48532992	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	37149.0	NM_001004191	434402.0	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	59.49	85.71	62.9	58.03	45.25	60.28	42.25	40.24	45.59
Merged-chr8-10839163-1	chr8	10838663	10839663	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43291.0	NR_040705	320014.0	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	13.16	4.15	3.7	11.47	3.73	0.0	1.06	4.86	6.25
Merged-chr10-93163484-1	chr10	93162984	93163984	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_035452)	TTS (NR_035452)	699.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	29.17	35.94	14.8	37.78	22.39	34.56	38.02	38.47	34.35
Merged-chr18-65936432-1	chr18	65935932	65936932	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013833, intron 2 of 2)	intron (NM_013833, intron 2 of 2)	2657.0	NM_013833	19434.0	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	5.72	4.15	7.4	2.02	2.8	2.41	1.06	5.75	5.0
Merged-chr4-144974651-1	chr4	144974151	144975151	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001276502, exon 69 of 69)	3' UTR (NM_001276502, exon 69 of 69)	81514.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	13.73	19.81	1.85	9.45	10.73	13.66	10.56	7.07	9.99
Merged-chr5-140614217-1	chr5	140613717	140614717	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008494, exon 7 of 8)	exon (NM_008494, exon 7 of 8)	6876.0	NM_008494	16848.0	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	11.44	13.82	16.65	5.4	7.93	31.35	10.56	8.4	23.11
Merged-chr10-59921071-1	chr10	59920571	59921571	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30699.0	NM_029083	74747.0	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.57	3.69	5.55	4.05	1.4	0.0	2.11	6.63	5.0
Merged-chr11-58939580-1	chr11	58939080	58940080	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-674.0	NM_022423	108660.0	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	12.01	12.9	9.25	14.84	15.86	19.29	20.07	16.8	14.36
Merged-chr10-96541048-1	chr10	96540548	96541548	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Tigger6a|DNA|TcMar-Tigger	-75953.0	NM_007569	12226.0	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	4.0	2.3	1.85	8.77	1.4	6.43	9.51	3.1	5.0
Merged-chr6-124448627-1	chr6	124448127	124449127	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001346656, intron 12 of 17)	intron (NM_001346656, intron 12 of 17)	14117.0	NM_001346656	232370.0	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	2.29	1.84	1.85	3.37	0.47	6.43	2.11	0.88	1.87
Merged-chr14-122645709-1	chr14	122645209	122646209	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153443, intron 8 of 24)	intron (NR_153443, intron 8 of 24)	111381.0	NM_144844	110821.0	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	17.16	15.67	12.02	15.52	8.86	16.88	31.69	15.48	11.24
Merged-chr14-76505062-1	chr14	76504562	76505562	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009366, intron 1 of 2)	intron (NM_009366, intron 1 of 2)	552.0	NM_009366	21807.0	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	44.05	41.47	14.8	64.77	70.44	34.56	12.67	14.59	6.25
Merged-chr12-16868873-1	chr12	16868373	16869373	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26105.0	NM_009072	19878.0	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	43.48	41.47	45.32	26.99	26.12	47.42	14.79	12.38	13.74
Merged-chr2-32835906-1	chr2	32835406	32836406	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113569, intron 1 of 19)	intron (NM_001113569, intron 1 of 19)	11326.0	NM_009295	20910.0	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	15.45	21.2	22.2	29.01	21.46	35.37	10.56	19.01	21.23
Merged-chr1-135467152-1	chr1	135466652	135467652	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173437, intron 9 of 28)	intron (NM_173437, intron 9 of 28)	-12469.0	NR_049188	100885827.0		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	6.86	0.92	4.62	4.05	0.0	4.82	4.22	0.44	3.75
Merged-chr10-9674866-1	chr10	9674366	9675366	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177271, exon 1 of 2)	exon (NM_177271, exon 1 of 2)	342.0	NM_177271	320825.0	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	1.72	0.46	0.0	1.35	1.4	4.82	3.17	0.44	1.25
Merged-chr18-39304348-1	chr18	39303848	39304848	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361073, intron 19 of 21)	intron (NM_001361073, intron 19 of 21)	182897.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	1.72	1.38	1.85	6.07	1.87	3.22	3.17	0.88	3.12
Merged-chr4-118360963-1	chr4	118360463	118361463	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026601, intron 3 of 8)	intron (NM_026601, intron 3 of 8)	964.0	NR_003946	68180.0	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	41.19	27.65	26.82	81.64	65.78	47.42	13.73	9.73	13.74
Merged-chr14-9638212-1	chr14	9637712	9638712	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360141, intron 8 of 9)	MIR3|SINE|MIR	-245883.0	NR_030680	100042415.0	Mm.235938	NR_030680	ENSMUSG00000089686	Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	6.29	1.84	1.85	6.07	4.2	6.43	2.11	2.21	1.25
Merged-chr1-173935054-1	chr1	173934554	173935554	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001302651, exon 5 of 8)	exon (NM_001302651, exon 5 of 8)	7438.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	13.73	15.21	12.95	35.76	23.33	36.17	15.84	18.13	11.24
Merged-chr7-122207498-1	chr7	122206998	122207998	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-11998.0	NM_027363	70261.0	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	53.2	49.76	35.15	112.0	64.38	63.5	87.66	84.01	88.68
Merged-chr2-103007774-1	chr2	103007274	103008274	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	65739.0	NM_175094	27402.0	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	56.06	52.99	37.92	126.85	96.1	67.52	51.75	62.79	44.34
Merged-chr13-10344588-1	chr13	10344088	10345088	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033269, intron 1 of 4)	intron (NM_033269, intron 1 of 4)	16215.0	NM_033269	12671.0	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.57	1.38	0.0	6.07	1.4	3.22	2.11	1.77	7.49
Merged-chr15-55191902-1	chr15	55191402	55192402	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037937, intron 4 of 8)	L1PB4|LINE|L1	58466.0	NM_001037937	97998.0	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	5.72	8.75	2.77	4.05	4.2	8.84	8.45	12.38	12.49
Merged-chr15-99876928-1	chr15	99876428	99877428	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MER57D|LTR|ERV1	-1472.0	NM_001113545	65970.0	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	108.12	135.01	61.97	74.89	97.97	65.11	114.07	131.77	50.59
Merged-chr2-132516460-1	chr2	132515960	132516960	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_028286, intron 2 of 3)	ORR1A2|LTR|ERVL-MaLR	25732.0	NR_028286	70371.0	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	6.86	1.84	0.0	2.7	1.4	0.0	3.17	2.21	0.0
Merged-chr6-37046433-1	chr6	37045933	37046933	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347104, intron 12 of 32)	intron (NM_001347104, intron 12 of 32)	-236254.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	2.86	1.84	7.4	3.37	2.33	1.61	4.22	5.31	1.25
Merged-chr12-74009651-1	chr12	74009151	74010151	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172804, intron 1 of 6)	intron (NM_172804, intron 1 of 6)	11890.0	NM_172804	238266.0	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.57	2.3	1.85	4.05	3.73	4.82	2.11	0.88	3.75
Merged-chr1-80413968-1	chr1	80413468	80414468	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31964.0	NR_040460	72208.0	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan	RIKEN cDNA 1700016L21 gene	ncRNA	8.01	1.84	2.77	4.05	4.67	3.22	4.22	3.1	1.25
Merged-chr12-86146438-1	chr12	86145938	86146938	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029601, intron 4 of 7)	L1MA6|LINE|L1	-22903.0	NR_046081	328136.0	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	10.87	14.75	17.57	10.8	12.6	23.31	23.24	20.34	21.86
Merged-chr7-19083437-1	chr7	19082937	19083937	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001190491)	promoter-TSS (NM_001190491)	-412.0	NR_126095	13400.0	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	49.2	21.2	40.7	21.59	16.79	34.56	87.66	43.77	34.97
Merged-chr8-7964876-1	chr8	7964376	7965376	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	695897.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.86	2.3	0.0	2.02	5.6	1.61	4.22	1.33	4.37
Merged-chr19-5814323-1	chr19	5813823	5814823	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-11651.0	NR_002847	72289.0	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	22.31	16.59	13.87	33.06	14.46	20.09	23.24	15.48	16.86
Merged-chr10-28304032-1	chr10	28303532	28304532	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359356, intron 3 of 30)	intron (NM_001359356, intron 3 of 30)	229212.0	NM_001359356	19272.0	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	2.29	3.23	8.32	6.07	4.67	3.22	4.22	2.21	0.62
Merged-chr5-66242095-1	chr5	66241595	66242595	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17803.0	NM_001302833	70918.0	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	2.29	0.46	9.25	2.7	2.8	1.61	2.11	1.33	0.0
Merged-chr11-70597491-1	chr11	70596991	70597991	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016713, intron 2 of 30)	intron (NM_016713, intron 2 of 30)	-18403.0	NM_001145537	668433.0	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	30.89	17.05	7.4	20.92	12.6	10.45	11.62	12.82	9.37
Merged-chr11-106093324-1	chr11	106092824	106093824	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011947, intron 1 of 15)	MIRc|SINE|MIR	8422.0	NM_011947	26406.0	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	28.03	39.63	16.65	35.76	27.99	17.68	26.4	36.7	14.36
Merged-chr1-30947721-1	chr1	30947221	30948221	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011200, intron 1 of 5)	intron (NM_011200, intron 1 of 5)	1989.0	NR_002688	433406.0	Mm.389003	NR_002688		Gm13363	-	predicted gene 13363	pseudo	20.02	10.14	3.7	17.54	9.8	5.63	14.79	3.54	8.74
Merged-chr2-112401986-1	chr2	112401486	112402486	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024254, intron 1 of 9)	HAL1|LINE|L1	22775.0	NM_024254	72425.0	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	4.58	2.76	3.7	2.7	4.67	6.43	3.17	3.1	1.25
Merged-chr2-166228594-1	chr2	166228094	166229094	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45314.0	NR_033467	670775.0	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	-	predicted gene 11468	ncRNA	6.29	1.38	3.7	3.37	2.8	1.61	5.28	0.88	2.5
Merged-chr3-142393838-1	chr3	142393338	142394338	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001190854, intron 1 of 12)	intron (NM_001190854, intron 1 of 12)	1858.0	NM_001190853	56376.0	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	33.18	15.21	18.5	25.64	15.86	21.7	17.96	16.36	14.36
Merged-chr19-6400870-1	chr19	6400370	6401370	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011242, intron 1 of 16)	intron (NM_011242, intron 1 of 16)	287.0	NM_011242	19395.0	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	26.31	35.48	37.92	45.88	23.79	50.64	61.26	47.31	47.46
Merged-chr7-63931377-1	chr7	63930877	63931877	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021366, intron 1 of 1)	intron (NM_021366, intron 1 of 1)	7538.0	NM_021366	50794.0	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	23.45	25.8	48.1	14.17	14.46	20.09	30.63	35.37	31.23
Merged-chr12-40600595-1	chr12	40600095	40601095	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	154542.0	NM_172803	238130.0	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	7.44	7.37	18.5	10.8	7.46	13.66	2.11	2.65	5.62
Merged-chr7-46606687-1	chr7	46606187	46607187	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013789, intron 8 of 10)	intron (NM_013789, intron 8 of 10)	33120.0	NM_013789	27414.0	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	5.15	1.38	0.0	6.75	2.8	2.41	3.17	3.54	3.75
Merged-chr19-59194164-1	chr19	59193664	59194664	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-24135.0	NM_009501	22326.0	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	2.29	1.84	1.85	5.4	0.0	6.43	5.28	0.0	0.62
Merged-chr7-101297839-1	chr7	101297339	101298339	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_152152, intron 3 of 16)	intron (NR_152152, intron 3 of 16)	4249.0	NM_001111111	73683.0	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	20.02	15.67	14.8	14.17	3.27	8.04	15.84	22.99	14.99
Merged-chr17-69234332-1	chr17	69233832	69234832	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355736, intron 3 of 21)	ORR1E|LTR|ERVL-MaLR	42874.0	NR_045428	69750.0	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	16.02	11.52	12.02	10.8	7.46	12.86	5.28	8.4	8.12
Merged-chr7-101321075-1	chr7	101320575	101321575	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_019990)	promoter-TSS (NM_019990)	-38.0	NM_019990	56018.0	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	11.44	2.76	1.85	8.1	4.67	4.02	9.51	7.52	3.12
Merged-chr8-94093536-1	chr8	94093036	94094036	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026116, intron 1 of 16)	intron (NM_026116, intron 1 of 16)	5275.0	NM_026116	67378.0	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	18.88	13.36	9.25	32.39	24.26	14.47	11.62	15.92	7.49
Merged-chr11-47033336-1	chr11	47032836	47033836	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_011891, intron 6 of 7)	intron (NM_011891, intron 6 of 7)	222537.0	NM_178759	276891.0	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	5.15	4.61	3.7	0.67	4.2	6.43	5.28	5.75	0.62
Merged-chr15-27643129-1	chr15	27642629	27643629	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-12436.0	NM_001013792	432940.0	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.57	1.38	1.85	1.35	4.2	0.8	4.22	2.21	3.75
Merged-chr15-101846134-1	chr15	101845634	101846634	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008473, exon 9 of 9)	exon (NM_008473, exon 9 of 9)	4652.0	NM_008473	16678.0	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	2.86	2.76	3.7	1.35	1.4	0.8	6.34	1.33	0.0
Merged-chr13-96107808-1	chr13	96107308	96108308	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	24769.0	NM_029210	75209.0	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	1.72	2.76	6.47	4.05	1.87	6.43	22.18	9.29	11.24
Merged-chr1-128824400-1	chr1	128823900	128824900	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-232101.0	NM_001356509	12767.0	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|CXC-R4|CXCR-4|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.86	3.69	0.0	2.02	8.4	0.0	3.17	2.65	2.5
Merged-chr12-64967378-1	chr12	64966878	64967878	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_177805, exon 1 of 20)	exon (NM_177805, exon 1 of 20)	1636.0	NM_177805	328108.0	Mm.138465	NM_177805	ENSMUSG00000035614	Togaram1	A430041B07Rik|BC062107|C130034K06|Fam179b|mKIAA0423	TOG array regulator of axonemal microtubules 1	protein-coding	22.31	30.87	24.05	26.31	14.46	23.31	16.9	14.59	14.99
Merged-chr10-122738062-1	chr10	122737562	122738562	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110218, intron 1 of 9)	intron (NM_001110218, intron 1 of 9)	58747.0	NR_106182	102466884.0		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	30.89	34.56	31.45	31.04	30.32	47.42	50.7	64.11	56.21
Merged-chr8-64618834-1	chr8	64618334	64619334	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013494, intron 2 of 8)	intron (NM_013494, intron 2 of 8)	74275.0	NM_013494	12876.0	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|NF-alpha1|R74677|fat	carboxypeptidase E	protein-coding	1.72	0.92	5.55	4.05	2.33	0.0	2.11	1.33	1.25
Merged-chr9-65574854-1	chr9	65574354	65575354	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153119, intron 1 of 5)	intron (NM_153119, intron 1 of 5)	5233.0	NM_153119	102595.0	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	145.87	126.25	134.12	165.98	95.63	130.21	176.38	195.88	119.91
Merged-chr7-132736253-1	chr7	132735753	132736753	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	40663.0	NM_001347630	77938.0	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	16.02	11.52	18.5	14.84	20.53	28.13	14.79	10.17	11.24
Merged-chr15-72813102-1	chr15	72812602	72813602	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001164641, intron 17 of 17)	intron (NM_001164641, intron 17 of 17)	-2778.0	NR_002864	353342.0	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	5.15	6.45	8.32	4.72	8.4	3.22	13.73	8.4	7.49
Merged-chr3-142588110-1	chr3	142587610	142588610	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6737.0	NM_010259	14468.0	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	13.73	18.43	23.12	16.87	13.06	9.65	17.96	17.24	12.49
Merged-chr11-115285371-1	chr11	115284871	115285871	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_178035, exon 4 of 6)	exon (NM_178035, exon 4 of 6)	-8402.0	NM_007997	14149.0	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	15.45	16.13	16.65	18.22	7.93	15.27	19.01	12.82	16.86
Merged-chr2-158116255-1	chr2	158115755	158116755	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_009373)	TTS (NM_009373)	-24458.0	NR_040609	72340.0	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	6.86	5.99	8.32	4.72	6.06	14.47	8.45	6.63	8.74
Merged-chr10-118865169-1	chr10	118864669	118865669	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001014390, intron 2 of 2)	intron (NM_001014390, intron 2 of 2)	3734.0	NM_001014390	69181.0	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	52.63	36.86	48.1	53.98	29.86	53.85	34.85	37.58	23.73
Merged-chr14-7774211-1	chr14	7773711	7774711	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(CAG)n|Simple_repeat|Simple_repeat	-43746.0	NM_001081427	286940.0	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	5.15	3.69	8.32	7.42	5.6	9.65	10.56	6.19	5.0
Merged-chr12-103371921-1	chr12	103371421	103372421	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4973.0	NR_033587	68149.0	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	1.72	3.69	1.85	6.07	1.87	2.41	4.22	1.77	6.25
Merged-chr5-34519126-1	chr5	34518626	34519626	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus1|SINE|Alu	-5147.0	NM_139064	231130.0	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	27.46	18.43	14.8	14.17	21.93	33.76	24.29	25.65	23.73
Merged-chr7-100502014-1	chr7	100501514	100502514	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MT2B|LTR|ERVL	8656.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	42.33	49.3	49.95	36.43	34.99	88.42	59.15	70.3	36.22
Merged-chr2-52845545-1	chr2	52845045	52846045	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12323.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	5.72	3.69	10.17	5.4	5.6	3.22	9.51	2.21	5.0
Merged-chr13-44657803-1	chr13	44657303	44658303	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-72971.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	6.29	2.3	5.55	4.72	3.27	3.22	10.56	5.31	5.0
Merged-chr4-57026019-1	chr4	57025519	57026519	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355492, intron 19 of 24)	intron (NM_001355492, intron 19 of 24)	-35628.0	NM_001142965	230235.0	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	4.58	4.61	9.25	5.4	5.6	3.22	2.11	1.33	6.87
Merged-chr19-11611676-1	chr19	11611176	11612176	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6872.0	NM_026835	68774.0	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	2.86	5.53	5.55	1.35	1.87	0.0	4.22	7.96	0.0
Merged-chr1-143922591-1	chr1	143922091	143923091	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	81558.0	NM_009061	19735.0	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	5.72	3.23	5.55	14.17	4.67	1.61	12.67	7.96	4.37
Merged-chr17-56475439-1	chr17	56474939	56475939	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252455, intron 1 of 27)	intron (NM_001252455, intron 1 of 27)	1041.0	NM_001252455	19280.0	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	8.01	2.76	2.77	6.07	4.67	3.22	6.34	4.42	2.5
Merged-chr2-179648693-1	chr2	179648193	179649193	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206262.0	NM_009867	12561.0	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	3.43	4.15	1.85	6.07	11.2	10.45	6.34	1.33	0.0
Merged-chr13-28860408-1	chr13	28859908	28860908	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045054, intron 2 of 7)	intron (NR_045054, intron 2 of 7)	25014.0	NR_045054	72518.0	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	8.58	7.83	3.7	4.05	12.6	14.47	1.06	0.88	5.0
Merged-chr5-30962476-1	chr5	30961976	30962976	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2149.0	NM_016703	50907.0	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	147.02	119.34	59.2	93.79	73.71	83.59	111.96	121.15	86.81
Merged-chr13-47173382-1	chr13	47172882	47173882	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146042, intron 1 of 7)	L1MC3|LINE|L1	-20621.0	NM_001170643	218215.0	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	2.86	3.23	18.5	4.05	7.46	8.84	4.22	1.77	10.62
Merged-chr17-56111946-1	chr17	56111446	56112446	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025874, exon 9 of 9)	3' UTR (NM_025874, exon 9 of 9)	-2144.0	NM_020568	57435.0	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	1.72	1.38	0.0	6.75	2.8	0.0	2.11	0.88	0.0
Merged-chr6-87085242-1	chr6	87084742	87085742	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013528, intron 15 of 18)	intron (NM_013528, intron 15 of 18)	-19504.0	NM_001167938	52372.0	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	8.01	1.84	0.0	2.02	3.73	1.61	3.17	1.77	3.75
Merged-chr11-118534902-1	chr11	118534402	118535402	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285436, intron 3 of 13)	intron (NM_001285436, intron 3 of 13)	58070.0	NM_001359368	217364.0	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	5.15	0.0	7.4	3.37	0.93	0.0	1.06	0.88	1.25
Merged-chr1-138848914-1	chr1	138848414	138849414	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1335.0	NM_010714	16876.0	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	2.29	0.92	1.85	5.4	2.8	0.0	2.11	1.33	5.0
Merged-chr7-118802037-1	chr7	118801537	118802537	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027815, intron 21 of 30)	intron (NM_027815, intron 21 of 30)	53576.0	NM_001168220	66356.0	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	15.45	20.74	24.97	14.84	14.46	16.08	17.96	32.72	13.12
Merged-chr2-26747604-1	chr2	26747104	26748104	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx10|LINE|L1	15884.0	NM_001359164	105244099.0		NM_001359164		Gm39773	LCN16	predicted gene, 39773	protein-coding	6.29	11.52	7.4	6.75	8.86	14.47	36.97	28.3	24.98
Merged-chr12-69924206-1	chr12	69923706	69924706	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_178628, intron 2 of 14)	B3|SINE|B2	-31043.0	NM_201519	399510.0	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	3.43	4.61	0.0	3.37	6.53	11.25	1.06	6.19	9.99
Merged-chr3-96292770-1	chr3	96292270	96293270	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010186, intron 2 of 5)	intron (NM_010186, intron 2 of 5)	1199.0	NM_010186	14129.0	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	44.62	58.06	59.2	55.33	64.38	79.58	95.06	97.72	65.58
Merged-chr13-29985659-1	chr13	29985159	29986159	+	549.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010093, exon 1 of 7)	exon (NM_010093, exon 1 of 7)	404.0	NM_010093	13557.0	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	39.47	54.83	61.05	47.23	34.52	70.73	78.16	70.75	44.34
Merged-chr9-45489622-1	chr9	45489122	45490122	+	549.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081270, intron 3 of 32)	MTD|LTR|ERVL-MaLR	-58390.0	NR_040732	74602.0	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	4.0	1.84	9.25	0.67	0.47	4.02	17.96	7.96	9.99
Merged-chr18-36403385-1	chr18	36402885	36403885	+	549.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_026027)	TTS (NM_026027)	51110.0	NM_026027	67199.0	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	5.72	1.38	0.0	2.7	0.93	8.04	5.28	1.77	5.0
Merged-chr7-4225343-2	chr7	4224852	4225852	+	548.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx2B2|LINE|L1	-12402.0	NM_001081239	232801.0	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	4.58	6.91	5.55	6.07	3.73	4.82	9.51	5.75	7.49
Merged-chr5-29681864-1	chr5	29681364	29682364	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER16_Mm|LTR|ERVK	-54034.0	NM_001359198	23950.0	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	HSJ-2|Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	9.15	5.07	3.7	7.42	4.2	8.04	13.73	5.75	4.37
Merged-chr6-124425269-2	chr6	124424780	124425780	+	548.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTRETN_Mm|LTR|ERVK	-9425.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	6.86	8.29	7.4	12.82	3.73	10.45	12.67	8.4	9.37
Merged-chr7-133632672-2	chr7	133632171	133633171	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-5004.0	NM_178115	214764.0	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	4.58	4.61	1.85	2.02	1.87	1.61	3.17	2.65	2.5
Merged-chr13-92635854-1	chr13	92635354	92636354	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172588, intron 1 of 11)	ORR1D1|LTR|ERVL-MaLR	24716.0	NM_172588	218442.0	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	6.86	5.07	9.25	8.1	9.8	16.08	15.84	6.63	4.37
Merged-chr16-25041447-1	chr16	25040947	25041947	+	548.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-18192.0	NR_040374	319487.0	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	4.58	6.45	5.55	8.77	9.8	8.84	4.22	2.65	11.87
Merged-chr11-53765269-1	chr11	53764769	53765769	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1615.0	NR_106131	102465772.0		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	57.78	53.45	47.17	44.53	30.79	47.42	51.75	55.27	27.48
Merged-chr10-128743437-1	chr10	128742937	128743937	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358745, intron 3 of 25)	intron (NM_001358745, intron 3 of 25)	639.0	NM_016811	13139.0	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	25.74	34.56	13.87	27.66	39.19	45.82	20.07	22.11	9.99
Merged-chr1-82987968-1	chr1	82987468	82988468	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	50480.0	NM_030556	80721.0	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	2.29	2.3	0.92	0.67	2.33	4.02	3.17	1.77	1.25
Merged-chr1-185331535-1	chr1	185331035	185332035	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011794)	promoter-TSS (NM_011794)	-624.0	NM_011794	23827.0	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	52.06	64.51	50.87	45.88	48.52	31.35	62.31	81.8	46.84
Merged-chr2-76672451-1	chr2	76671951	76672951	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355080, intron 1 of 4)	intron (NM_001355080, intron 1 of 4)	647.0	NM_001355079	14231.0	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	68.65	86.17	53.65	80.29	91.44	51.44	83.44	83.57	61.83
Merged-chr13-46930957-1	chr13	46930457	46931457	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1239.0	NM_010617	16553.0	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	13.16	29.95	24.05	33.74	22.86	25.72	48.58	43.33	14.36
Merged-chr1-157502783-1	chr1	157502283	157503283	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151610, intron 1 of 2)	intron (NR_151610, intron 1 of 2)	-4013.0	NM_033354	89867.0	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	4.58	9.68	5.55	8.77	3.27	8.04	7.39	10.61	9.99
Merged-chr8-70488597-1	chr8	70488097	70489097	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1239.0	NM_182991	67937.0	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	3.43	2.76	1.85	1.35	1.87	1.61	1.06	3.98	1.87
Merged-chr12-79842411-1	chr12	79841911	79842911	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	82322.0	NR_131075	77290.0	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	9.15	9.68	18.5	10.12	8.4	24.11	20.07	6.63	6.25
Merged-chr3-105803155-1	chr3	105802655	105803655	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1774.0	NM_145541	109905.0	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein 1a	protein-coding	224.82	142.84	76.77	149.11	89.1	114.14	165.82	140.17	109.29
Merged-chr16-16535464-1	chr16	16534964	16535964	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001301817, intron 1 of 16)	RMER10A|LTR|ERVL	-8053.0	NM_001301818	224014.0	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	5.72	7.37	5.55	3.37	5.13	6.43	7.39	6.19	2.5
Merged-chr17-35381023-1	chr17	35380523	35381523	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001143689, intron 3 of 5)	intron (NM_001143689, intron 3 of 5)	1406.0	NM_001143689	15015.0	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	10.3	3.69	14.8	8.1	2.8	12.06	6.34	4.42	0.62
Merged-chr5-123580873-1	chr5	123580373	123581373	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019765, intron 22 of 23)	intron (NM_019765, intron 22 of 23)	-7858.0	NM_029929	77573.0	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	21.74	15.21	21.27	28.34	17.73	15.27	15.84	13.71	8.74
Merged-chr16-92385409-1	chr16	92384909	92385909	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	MLT1E|LTR|ERVL-MaLR	-2726.0	NR_105054	101056236.0	Mm.149108	NR_105054		Gm29805	-	predicted gene, 29805	ncRNA	8.01	2.3	3.7	4.05	0.47	0.0	1.06	3.98	0.62
Merged-chr9-35103653-1	chr9	35103153	35104153	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-13075.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	13.73	18.89	26.82	8.77	11.66	23.31	10.56	10.61	14.99
Merged-chr10-81179152-1	chr10	81178652	81179652	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_028549)	TTS (NR_028549)	191.0	NR_028549	100217454.0		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	6.86	7.83	28.67	10.12	6.06	8.04	8.45	8.84	10.62
Merged-chr10-37235704-1	chr10	37235204	37236204	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96778.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	97.25	114.74	84.17	86.36	82.11	102.08	96.11	96.39	92.43
Merged-chr8-93011684-1	chr8	93011184	93012184	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	36508.0	NM_001013764	244595.0	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	1.14	3.23	3.7	2.7	3.27	1.61	3.17	1.77	6.25
Merged-chr1-148993800-1	chr1	148993300	148994300	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	928639.0	NM_001305632	18783.0	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	4.0	3.69	3.7	2.02	2.8	0.8	1.06	2.21	3.12
Merged-chr9-62839411-1	chr9	62838911	62839911	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033175, intron 1 of 6)	intron (NM_001033175, intron 1 of 6)	624.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	62.35	28.57	42.55	53.98	50.38	79.58	57.03	47.75	36.22
Merged-chr12-112913961-1	chr12	112913461	112914461	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010588, exon 15 of 26)	exon (NM_010588, exon 15 of 26)	6580.0	NR_105906	102465567.0		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	2.86	0.46	7.4	0.0	0.0	3.22	1.06	1.77	0.0
Merged-chr3-35482446-1	chr3	35481946	35482946	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	183717.0	NR_040748	625963.0	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	2.29	3.23	1.85	4.05	4.67	3.22	2.11	0.88	1.25
Merged-chr15-76523171-1	chr15	76522671	76523671	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-1042.0	NM_130893	170729.0	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	3.43	0.92	0.0	6.75	0.47	6.43	2.11	0.44	8.74
Merged-chr7-120634420-1	chr7	120633920	120634920	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025899)	promoter-TSS (NM_025899)	-769.0	NM_025899	67003.0	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	28.6	41.93	24.05	31.04	32.19	40.99	27.46	31.39	23.11
Merged-chr11-53785479-1	chr11	53784979	53785979	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_033332)	TTS (NR_033332)	15006.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	19.45	21.2	11.1	9.45	5.13	18.49	35.91	24.32	24.36
Merged-chr18-5187351-1	chr18	5186851	5187851	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21620.0	NR_153824	102637682.0	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	18.88	13.82	3.7	19.57	8.4	18.49	21.12	13.71	6.87
Merged-chr5-137122810-1	chr5	137122310	137123310	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6603.0	NM_201373	384309.0	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	5.72	3.69	0.92	0.67	0.47	2.41	2.11	1.33	1.25
Merged-chr5-143312079-1	chr5	143311579	143312579	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172726, intron 2 of 5)	intron (NM_172726, intron 2 of 5)	3281.0	NM_172726	231868.0	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	1.72	4.15	12.95	3.37	0.47	1.61	3.17	1.33	5.0
Merged-chr2-90543300-1	chr2	90542800	90543800	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008982, intron 1 of 23)	intron (NM_008982, intron 1 of 23)	37347.0	NM_008982	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	190.49	123.03	96.2	188.92	103.1	87.61	129.91	100.81	83.69
Merged-chr6-100144997-1	chr6	100144497	100145497	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	142361.0	NM_019743	56353.0	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	8.58	8.29	7.4	4.05	6.06	4.82	10.56	5.75	11.24
Merged-chr1-69241845-1	chr1	69241345	69242345	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-133786.0	NM_010154	13869.0	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	1.14	1.38	1.85	0.67	5.13	0.8	1.06	1.77	1.25
Merged-chr2-167793887-1	chr2	167793387	167794387	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	102710.0	NR_015500	329562.0	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	5.15	7.37	3.7	8.1	0.93	5.63	3.17	4.42	1.25
Merged-chr15-82345520-1	chr15	82345020	82346020	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_026914)	promoter-TSS (NM_026914)	-526.0	NM_026914	69029.0	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	50.34	46.54	25.9	43.86	20.06	40.19	23.24	22.55	11.87
Merged-chr5-49472768-2	chr5	49472272	49473272	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus2|LINE|L1	-187113.0	NM_001199244	80334.0	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	2.86	0.92	2.77	3.37	1.87	4.82	4.22	1.33	3.12
Merged-chr4-106875800-1	chr4	106875300	106876300	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-35670.0	NM_198438	72475.0	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.43	2.76	1.85	2.7	4.2	5.63	1.06	3.54	1.25
Merged-chr18-57583653-1	chr18	57583153	57584153	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_029290, intron 3 of 6)	intron (NM_029290, intron 3 of 6)	-31256.0	NR_015494	75084.0	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	12.59	13.82	9.25	15.52	7.0	16.08	9.51	8.84	14.36
Merged-chrX-162531142-1	chrX	162530642	162531642	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359103, intron 5 of 14)	(A)n|Simple_repeat|Simple_repeat	34374.0	NM_001359104	194590.0	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	2.86	0.46	8.32	2.7	1.4	0.0	2.11	0.88	1.25
Merged-chr10-40358337-1	chr10	40357837	40358837	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001291816, intron 1 of 11)	intron (NM_001291816, intron 1 of 11)	9029.0	NM_001291816	78334.0	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	5.72	4.15	7.4	9.45	8.4	8.84	11.62	6.19	9.37
Merged-chr4-41708526-1	chr4	41708026	41709026	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4991.0	NM_027278	69961.0	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	5.72	1.38	0.0	6.07	1.4	8.84	1.06	3.1	0.0
Merged-chr12-72361078-1	chr12	72360578	72361578	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_153457, intron 1 of 8)	intron (NM_153457, intron 1 of 8)	47976.0	NM_001286448	104001.0	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	5.72	3.69	6.47	8.1	4.2	6.43	9.51	7.07	13.12
Merged-chr16-10565693-1	chr16	10565193	10566193	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177562, intron 3 of 22)	intron (NM_177562, intron 3 of 22)	20354.0	NM_001204229	74374.0	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	1.72	1.38	4.62	8.77	0.93	3.22	4.22	0.88	1.25
Merged-chr17-42840789-1	chr17	42840289	42841289	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009847, intron 3 of 17)	intron (NM_009847, intron 3 of 17)	35635.0	NM_009847	12488.0	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	7.44	9.68	27.75	8.77	7.46	16.08	6.34	9.29	11.87
Merged-chr7-19404222-1	chr7	19403722	19404722	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286039)	promoter-TSS (NM_001286039)	-118.0	NM_001286039	232943.0	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	10.3	3.69	8.32	2.02	1.4	3.22	1.06	0.44	7.49
Merged-chr2-124670097-1	chr2	124669597	124670597	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16516.0	NM_199239	214968.0	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	10.87	20.74	13.87	18.89	13.53	24.92	6.34	11.5	13.74
Merged-chr11-53776364-1	chr11	53775864	53776864	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001159396, exon 10 of 10)	exon (NM_001159396, exon 10 of 10)	5891.0	NM_001159396	16362.0	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	26.89	17.05	26.82	14.17	7.0	41.8	21.12	17.24	9.99
Merged-chr11-54127091-1	chr11	54126591	54127591	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011031, intron 13 of 15)	intron (NM_011031, intron 13 of 15)	26167.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	9.15	3.23	5.55	7.42	5.13	8.84	5.28	2.65	1.25
Merged-chr16-5195363-1	chr16	5194863	5195863	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_013796)	TTS (NM_013796)	8649.0	NM_013796	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	1.14	2.3	6.47	0.67	2.33	3.22	1.06	1.33	3.12
Merged-chr1-152617140-1	chr1	152616640	152617640	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001346119, intron 2 of 17)	intron (NM_001346119, intron 2 of 17)	8077.0	NM_016846	19731.0	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	84.09	79.25	82.32	106.61	64.38	106.1	107.73	104.79	73.69
Merged-chr10-12017479-1	chr10	12016979	12017979	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	408255.0	NM_013898	30058.0	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	2.86	2.3	3.7	2.02	3.27	12.06	2.11	5.75	1.25
Merged-chr4-43924902-1	chr4	43924402	43925402	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016678, intron 11 of 20)	intron (NM_016678, intron 11 of 20)	-32800.0	NM_027450	384009.0	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	19.45	21.66	20.35	26.31	6.06	9.65	11.62	5.31	8.74
Merged-chr11-85186977-1	chr11	85186477	85187477	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B2_Mm1a|SINE|B2	15881.0	NM_028589	73634.0	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	9.15	8.75	14.8	8.77	5.6	13.66	14.79	16.8	17.49
Merged-chr11-106615779-1	chr11	106615279	106616279	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	RLTR14_RN|LTR|ERV1	-2849.0	NM_198292	21763.0	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	22.88	16.59	12.02	25.64	8.86	17.68	25.35	11.94	14.99
Merged-chr6-29276706-1	chr6	29276206	29277206	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	4080.0	NM_023516	69573.0	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	6.29	2.3	7.4	8.1	2.33	8.04	6.34	1.77	5.0
Merged-chr7-19256729-1	chr7	19256229	19257229	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_001282021)	TTS (NM_001282021)	15125.0	NM_001282021	22323.0	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	10.87	7.37	6.47	4.72	8.4	13.66	7.39	8.4	3.75
Merged-chr12-32637909-1	chr12	32637409	32638409	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-182426.0	NM_021524	59027.0	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	28.6	19.35	6.47	12.14	19.13	8.04	4.22	9.29	5.0
Merged-chr5-64751420-1	chr5	64750920	64751920	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-52103.0	NM_008453	16599.0	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	4.58	2.76	6.47	2.02	2.8	4.82	8.45	10.17	4.37
Merged-chr17-45737407-1	chr17	45736907	45737907	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152153, intron 1 of 4)	intron (NR_152153, intron 1 of 4)	2901.0	NR_152153	433111.0	Mm.213441	NR_152153	ENSMUSG00000097727	F630040K05Rik	-	RIKEN cDNA F630040K05 gene	ncRNA	6.86	5.99	9.25	10.8	3.27	1.61	8.45	1.77	5.62
Merged-chr9-58955742-1	chr9	58955242	58956242	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008684, intron 7 of 28)	B3|SINE|B2	80699.0	NM_001042752	18007.0	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	16.59	11.98	1.85	11.47	15.39	7.23	12.67	15.03	6.25
Merged-chr2-27753373-1	chr2	27752873	27753873	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290481, intron 6 of 9)	intron (NM_001290481, intron 6 of 9)	42790.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	11.44	19.35	29.6	11.47	15.39	38.58	14.79	9.29	29.35
Merged-chr4-132035973-1	chr4	132035473	132036473	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183428, intron 1 of 20)	MTB_Mm|LTR|ERVL-MaLR	13105.0	NM_001128606	269587.0	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	24.03	21.66	40.7	26.31	19.13	25.72	24.29	19.01	21.23
Merged-chr9-104583431-1	chr9	104582931	104583931	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028719, intron 1 of 15)	intron (NM_028719, intron 1 of 15)	13948.0	NM_028719	74020.0	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	13.16	21.66	14.8	13.49	17.73	49.03	3.17	1.77	3.75
Merged-chr17-23664741-1	chr17	23664241	23665241	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153784, intron 2 of 9)	MIRb|SINE|MIR	4235.0	NM_153784	212733.0	Mm.59997	NM_153784	ENSMUSG00000043782	Bicdl2	BICDR-2|Ccdc64b	BICD family like cargo adaptor 2	protein-coding	4.0	1.84	2.77	4.05	1.4	0.0	4.22	2.21	1.25
Merged-chr10-93167478-1	chr10	93166978	93167978	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	B4A|SINE|B4	4693.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	32.61	34.1	12.02	36.43	20.53	26.53	77.1	62.79	38.72
Merged-chr18-67715274-1	chr18	67714774	67715774	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008977, intron 1 of 9)	MTC|LTR|ERVL-MaLR	9347.0	NM_001127177	19255.0	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	13.16	11.98	12.95	4.05	3.73	8.04	8.45	8.4	2.5
Merged-chr13-68583828-1	chr13	68583328	68584328	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_138477, exon 2 of 7)	non-coding (NR_138477, exon 2 of 7)	1618.0	NR_138478	69577.0	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	4.58	3.23	5.55	5.4	5.6	1.61	1.06	0.44	6.25
Merged-chr10-62338822-1	chr10	62338322	62339322	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010438, intron 4 of 21)	intron (NM_010438, intron 4 of 21)	1599.0	NM_001146100	15275.0	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	20.02	16.13	18.5	9.45	11.66	4.02	26.4	17.24	25.61
Merged-chr6-129471181-1	chr6	129470681	129471681	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_020008, intron 1 of 5)	intron (NM_020008, intron 1 of 5)	1598.0	NM_001309637	56644.0	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	117.27	143.76	87.87	111.33	89.57	97.26	134.14	175.1	84.31
Merged-chr2-94407359-1	chr2	94406859	94407859	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355691)	promoter-TSS (NM_001355691)	652.0	NR_027831	66457.0	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	26.31	31.33	20.35	29.69	33.59	29.74	38.02	32.72	12.49
Merged-chr2-73020026-1	chr2	73019526	73020526	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39580.0	NM_001018042	20687.0	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	2.29	3.23	0.0	3.37	0.47	3.22	2.11	0.44	4.37
Merged-chr10-37136579-1	chr10	37136079	37137079	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_008538, exon 2 of 2)	exon (NM_008538, exon 2 of 2)	2347.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	70.36	53.45	52.72	70.85	37.32	82.79	64.43	28.3	28.1
Merged-chr2-145685071-1	chr2	145684571	145685571	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2|LINE|L2	-16124.0	NR_033220	408057.0	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.44	4.61	5.55	2.02	0.93	1.61	4.22	2.65	3.75
Merged-chr4-120949119-1	chr4	120948619	120949619	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005788, intron 2 of 5)	intron (NM_001005788, intron 2 of 5)	2582.0	NM_001005788	381549.0	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	34.32	56.68	69.37	34.41	35.45	57.07	70.76	53.06	51.21
Merged-chr7-18959620-2	chr7	18959112	18960112	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	3' UTR (NM_001029877, exon 4 of 4)	3' UTR (NM_001029877, exon 4 of 4)	-27912.0	NM_194064	378430.0	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos C2HC-type zinc finger 2	protein-coding	9.15	3.69	2.77	4.72	2.33	3.22	6.34	3.98	5.0
Merged-chr4-53116501-1	chr4	53116001	53117001	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	43394.0	NM_013454	11303.0	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	183.63	108.75	102.67	173.4	62.98	143.07	212.29	208.7	124.91
Merged-chr7-81167299-2	chr7	81166796	81167796	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004184, intron 14 of 17)	B2_Mm2|SINE|B2	-46508.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	4.0	4.15	0.0	2.7	0.93	1.61	2.11	6.19	5.0
Merged-chr7-67549314-1	chr7	67548814	67549814	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_028144, intron 5 of 8)	intron (NR_028144, intron 5 of 8)	95922.0	NM_175124	67867.0	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	6.29	5.07	16.65	2.7	4.2	8.04	4.22	2.21	13.12
Merged-chr9-56166315-1	chr9	56165815	56166815	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5245.0	NM_019793	56434.0	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	4.58	0.92	0.0	4.05	4.2	3.22	3.17	2.65	3.75
Merged-chr15-99590811-1	chr15	99590311	99591311	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_009701)	promoter-TSS (NM_009701)	-217.0	NM_009701	11830.0	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	2.29	0.46	1.85	2.02	0.93	1.61	2.11	2.21	1.25
Merged-chr3-137610915-1	chr3	137610415	137611415	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-12757.0	NM_030143	73284.0	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	23.45	18.89	7.4	23.62	18.19	4.02	11.62	10.17	3.75
Merged-chr17-28693778-1	chr17	28693278	28694278	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168514, intron 2 of 12)	intron (NM_001168514, intron 2 of 12)	1210.0	NM_001357724	26416.0	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	90.96	94.0	76.77	66.8	68.58	69.13	62.31	93.74	75.57
Merged-chr6-122608050-1	chr6	122607550	122608550	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	2037.0	NM_008108	14562.0	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	1.14	1.84	2.77	1.35	4.2	1.61	6.34	1.33	6.25
Merged-chr6-87531154-1	chr6	87530654	87531654	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001037727, intron 1 of 10)	intron (NM_001037727, intron 1 of 10)	2105.0	NM_001037727	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	73.79	80.18	57.35	103.23	78.84	70.73	158.43	167.58	66.2
Merged-chr10-37234430-1	chr10	37233930	37234930	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MIRc|SINE|MIR	-95504.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	56.06	65.89	49.02	45.88	31.72	64.3	50.7	45.54	49.34
Merged-chr3-101291227-1	chr3	101290727	101291727	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3288.0	NM_013486	12481.0	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	2.29	4.15	7.4	3.37	3.27	4.82	3.17	2.65	2.5
Merged-chr19-36390929-1	chr19	36390429	36391429	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029508, intron 1 of 8)	intron (NM_029508, intron 1 of 8)	11862.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	4.0	3.23	4.62	2.7	1.4	2.41	3.17	5.75	2.5
Merged-chr4-132304209-1	chr4	132303709	132304709	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001081651)	promoter-TSS (NM_001081651)	-853.0	NM_001081651	242681.0	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	14.87	28.11	15.72	20.24	19.13	15.27	33.8	22.99	14.99
Merged-chr7-127207732-1	chr7	127207232	127208232	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_144522, exon 1 of 9)	exon (NM_144522, exon 1 of 9)	736.0	NM_144522	68449.0	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	63.5	99.07	114.69	62.75	60.65	80.38	95.06	100.37	100.55
Merged-chr11-94986446-1	chr11	94985946	94986946	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4766.0	NM_172261	217124.0	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	5.72	9.22	11.1	7.42	8.4	34.56	12.67	6.63	14.36
Merged-chr1-172302549-1	chr1	172302049	172303049	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4485.0	NM_178405	98660.0	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	5.72	2.76	1.85	8.77	5.6	13.66	2.11	3.54	0.0
Merged-chr13-58534691-1	chr13	58534191	58535191	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	76186.0	NM_022317	114304.0	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	4.58	2.3	0.0	3.37	3.27	4.82	1.06	3.54	1.25
Merged-chr7-139401138-1	chr7	139400638	139401638	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355162, intron 1 of 15)	intron (NM_001355162, intron 1 of 15)	644.0	NM_001355162	212111.0	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	8.58	14.75	0.0	12.82	12.13	6.43	10.56	11.05	0.0
Merged-chr11-43569432-1	chr11	43568932	43569932	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001045530, intron 3 of 5)	intron (NM_001045530, intron 3 of 5)	32130.0	NM_008375	16204.0	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	10.3	5.53	4.62	13.49	7.93	3.22	7.39	5.75	7.49
Merged-chr19-34198579-1	chr19	34198079	34199079	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	5645.0	NM_001360718	76630.0	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	77.8	59.9	76.77	76.92	54.11	64.3	127.8	93.74	78.07
Merged-chr3-130884122-1	chr3	130883622	130884622	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	UCON15|Unknown|Unknown	-153724.0	NM_001005859	68436.0	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	5.72	0.92	1.85	2.02	0.93	3.22	3.17	2.21	0.0
Merged-chr11-114669929-1	chr11	114669429	114670429	+	548.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048058, intron 2 of 3)	intron (NM_001048058, intron 2 of 3)	1148.0	NM_001048058	67671.0	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	29.75	34.56	60.12	30.36	21.93	25.72	35.91	41.56	13.12
Merged-chr10-121515978-1	chr10	121515478	121516478	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-39728.0	NM_138956	192678.0	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	5.15	3.69	9.25	10.12	5.13	2.41	4.22	5.31	2.5
Merged-chrX-106045874-1	chrX	106045374	106046374	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009726, intron 1 of 22)	Lx6|LINE|L1	18650.0	NM_009726	11977.0	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	17.73	27.65	16.65	24.96	28.46	6.43	24.29	30.95	26.23
Merged-chr14-105622347-1	chr14	105621847	105622847	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	1423.0	NR_105814	102465207.0		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	6.86	1.38	0.0	4.05	1.4	8.04	4.22	6.63	3.12
Merged-chr10-45122713-1	chr10	45122213	45123213	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	55499.0	NM_011156	19072.0	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	6.86	3.23	2.77	7.42	6.53	8.04	5.28	3.54	5.0
Merged-chr4-63206519-1	chr4	63206019	63207019	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-8893.0	NM_025685	373864.0	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	17.16	24.88	33.3	10.12	9.33	19.29	29.57	29.18	24.98
Merged-chr12-33301827-1	chr12	33301327	33302327	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033436)	promoter-TSS (NM_001033436)	-688.0	NM_001033436	380753.0	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	81.23	58.52	38.85	71.52	47.58	62.7	87.66	87.99	33.1
Merged-chr4-149549507-1	chr4	149549007	149550007	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023465, intron 4 of 4)	intron (NM_023465, intron 4 of 4)	4390.0	NM_001141930	67087.0	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	3.43	1.84	1.85	6.75	1.4	3.22	4.22	0.0	2.5
Merged-chr10-20290596-1	chr10	20290096	20291096	+	548.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7092.0	NR_105840	102466647.0		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	4.58	4.15	5.55	2.02	1.4	4.02	2.11	2.21	7.49
Merged-chr3-103871906-1	chr3	103871406	103872406	+	548.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_104070, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	11629.0	NM_008979	19260.0	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	23.45	25.8	17.57	18.22	8.86	21.7	28.52	33.16	19.98
Merged-chr5-18006637-1	chr5	18006137	18007137	+	547.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081143, intron 5 of 7)	intron (NM_001081143, intron 5 of 7)	44067.0	NM_001081143	242851.0	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	66.93	77.87	49.02	58.7	57.38	75.56	73.93	81.36	43.09
Merged-chr10-116580654-1	chr10	116580154	116581154	+	547.5	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001359248)	promoter-TSS (NM_001359248)	-118.0	NM_001359248	72068.0	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	130.43	128.56	130.42	103.91	116.16	112.53	164.76	156.09	90.56
Merged-chr1-173939522-1	chr1	173939022	173940022	+	547.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302649, intron 2 of 9)	intron (NM_001302649, intron 2 of 9)	2970.0	NM_001302649	15950.0	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Ifi203a|Ifi203b|Mndal	interferon activated gene 203	protein-coding	2.29	0.92	0.0	2.7	6.06	1.61	11.62	19.46	14.36
Merged-chr12-84706701-1	chr12	84706201	84707201	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7894.0	NM_001033334	627191.0	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|SynDIG2|Tmem90a	synapse differentiation inducing 1 like	protein-coding	6.86	2.76	7.4	4.72	1.4	0.0	8.45	3.98	6.25
Merged-chr1-85114905-1	chr1	85114405	85115405	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-5052.0	NM_213615	381287.0	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	4.58	3.23	14.8	4.05	5.13	0.8	0.0	2.65	9.37
Merged-chrX-142391760-1	chrX	142391260	142392260	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-1225.0	NM_019477	50790.0	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	37.18	53.45	18.5	41.16	35.45	22.51	42.25	47.75	24.98
Merged-chr1-72380991-1	chr1	72380491	72381491	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357519, intron 16 of 20)	C-rich|Low_complexity|Low_complexity	73570.0	NM_001357519	22596.0	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	2.29	0.46	1.85	1.35	2.33	1.61	4.22	1.33	1.25
Merged-chr9-104252659-1	chr9	104252159	104253159	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359740, intron 1 of 56)	Tigger7|DNA|TcMar-Tigger	10271.0	NM_001359740	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	9.15	7.37	16.65	7.42	5.6	5.63	7.39	5.31	3.75
Merged-chr17-86438156-1	chr17	86437656	86438656	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011104, intron 2 of 14)	intron (NM_011104, intron 2 of 14)	-150978.0	NR_045435	72104.0	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	9.72	5.07	3.7	6.07	6.53	3.22	2.11	2.65	2.5
Merged-chr5-21568057-1	chr5	21567557	21568557	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028977, intron 2 of 3)	intron (NM_028977, intron 2 of 3)	24530.0	NM_028977	74511.0	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	21.74	25.34	8.32	20.92	14.46	30.54	27.46	34.05	31.85
Merged-chr18-56675224-1	chr18	56674724	56675724	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32589.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	4.58	8.29	8.32	3.37	6.06	4.02	17.96	7.07	8.12
Merged-chr1-173743262-1	chr1	173742762	173743762	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1_Mus3|LINE|L1	-1453.0	NM_001204910	226691.0	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A|pyhinA	interferon activated gene 207	protein-coding	84.66	102.75	80.47	180.15	170.74	114.94	130.97	138.84	108.67
Merged-chr2-15098580-1	chr2	15098080	15099080	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D1|LTR|ERVL-MaLR	43218.0	NM_029466	75869.0	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	6.29	5.53	1.85	4.05	4.2	0.0	4.22	0.88	6.25
Merged-chr2-118900050-1	chr2	118899550	118900550	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1565.0	NM_001045523	228536.0	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.57	3.23	4.62	5.4	3.27	1.61	2.11	1.33	4.37
Merged-chr17-71021187-1	chr17	71020687	71021687	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083934, intron 1 of 36)	RSINE1|SINE|B4	1630.0	NM_001083934	17929.0	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	5.15	11.06	0.0	8.1	12.6	8.04	10.56	13.71	5.0
Merged-chr6-35122171-1	chr6	35121671	35122671	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001164413, intron 1 of 11)	intron (NM_001164413, intron 1 of 11)	11566.0	NM_001164412	53621.0	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	4.0	4.15	1.85	2.02	4.67	3.22	3.17	6.63	4.37
Merged-chr15-58991334-1	chr15	58990834	58991834	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	57524.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	6.29	7.83	0.0	21.59	14.93	6.43	8.45	10.61	2.5
Merged-chr13-44601262-1	chr13	44600762	44601762	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-129512.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	7.44	2.3	1.85	5.4	4.67	4.02	2.11	0.44	5.0
Merged-chr15-78843689-1	chr15	78843189	78844189	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027219, intron 1 of 2)	intron (NM_027219, intron 1 of 2)	1042.0	NM_027219	104445.0	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	9.72	0.92	0.0	5.4	5.13	1.61	4.22	1.33	9.99
Merged-chr2-168250448-1	chr2	168249948	168250948	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	18883.0	NM_001081134	241794.0	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275	potassium voltage-gated channel, subfamily G, member 1	protein-coding	2.29	0.92	0.0	2.02	2.33	4.82	1.06	1.33	0.0
Merged-chr8-75214449-1	chr8	75213949	75214949	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029182, intron 1 of 2)	intron (NM_029182, intron 1 of 2)	505.0	NM_029182	75141.0	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	6.86	4.15	1.85	11.47	4.2	4.82	10.56	3.54	0.0
Merged-chr4-3228848-1	chr4	3228348	3229348	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-43543.0	NM_001167535	100312471.0	Mm.377218	NM_001167535	ENSMUSG00000115466	Vmn1r3	Gm11778	vomeronasal 1 receptor 3	protein-coding	1.72	3.23	5.55	3.37	2.33	2.41	5.28	1.77	0.0
Merged-chr10-13884763-1	chr10	13884263	13885263	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	13483.0	NR_152745	102634635.0		NR_152745	ENSMUSG00000112172	Gm32172	-	predicted gene, 32172	ncRNA	6.29	1.84	7.4	5.4	2.8	6.43	7.39	7.07	6.25
Merged-chr6-28488523-1	chr6	28488023	28489023	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019776, intron 1 of 23)	(T)n|Simple_repeat|Simple_repeat	8175.0	NM_019776	56463.0	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	5.15	14.28	7.4	8.77	5.13	1.61	5.28	2.21	5.62
Merged-chr11-69066167-1	chr11	69065667	69066667	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4642.0	NM_025838	66910.0	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	8.58	0.0	3.7	6.75	4.2	0.0	4.22	3.54	6.25
Merged-chr6-67142381-1	chr6	67141881	67142881	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-104974.0	NM_007836	13197.0	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	4.0	1.38	3.7	1.35	0.0	4.02	3.17	0.0	4.37
Merged-chr3-14592322-1	chr3	14591822	14592822	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007892, intron 3 of 7)	Lx3A|LINE|L1	13651.0	NM_007892	13559.0	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	2.86	8.75	7.4	2.02	11.66	9.65	7.39	7.52	7.49
Merged-chr4-139310012-1	chr4	139309512	139310512	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_025337)	promoter-TSS (NM_025337)	696.0	NR_151463	212555.0	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	24.6	21.2	23.12	31.71	44.32	36.97	40.14	23.88	21.86
Merged-chr8-78900190-1	chr8	78899690	78900690	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-79038.0	NM_030145	78651.0	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	1.72	3.69	1.85	4.72	0.0	0.0	0.0	1.77	0.0
Merged-chr7-35396380-1	chr7	35395880	35396880	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_028120)	promoter-TSS (NM_028120)	387.0	NM_178643	101831.0	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	22.31	31.33	11.1	26.99	41.52	30.54	20.07	24.76	27.48
Merged-chr12-112473994-1	chr12	112473494	112474494	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15454.0	NM_177039	319942.0	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	2.29	0.0	3.7	2.02	2.8	0.0	0.0	3.1	0.62
Merged-chr8-104393814-1	chr8	104393314	104394314	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	intron (NM_153582, intron 1 of 3)	1993.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	2.29	5.07	5.55	7.42	5.6	3.22	6.34	6.19	11.24
Merged-chr18-47732901-1	chr18	47732401	47733401	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(T)n|Simple_repeat|Simple_repeat	56632.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	5.72	1.84	1.85	2.02	5.6	2.41	3.17	2.65	0.0
Merged-chr4-144907500-1	chr4	144907000	144908000	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357274, intron 2 of 6)	intron (NM_001357274, intron 2 of 6)	14363.0	NM_001357277	20148.0	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	21.17	24.88	40.7	35.76	31.72	45.01	34.85	19.9	39.97
Merged-chr8-3264364-1	chr8	3263864	3264864	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001330056, intron 1 of 21)	Lx7|LINE|L1	15253.0	NM_010568	16337.0	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	4.58	4.15	5.55	7.42	7.0	8.84	10.56	1.77	1.25
Merged-chr8-108984583-1	chr8	108984083	108985083	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	GA-rich|Low_complexity|Low_complexity	47723.0	NR_037295	100526511.0		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	173.9	203.21	105.44	130.9	95.63	71.54	162.65	207.38	83.06
Merged-chr13-37105151-1	chr13	37104651	37105651	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-54907.0	NM_001166391	74145.0	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	4.0	3.23	3.7	1.35	7.93	3.22	3.17	0.44	3.75
Merged-chr5-110968835-2	chr5	110968331	110969331	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001267622, intron 2 of 22)	MTC|LTR|ERVL-MaLR	-35313.0	NR_030482	735278.0		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	11.44	4.61	4.62	1.35	3.27	0.0	0.0	1.33	6.25
Merged-chr1-125476374-1	chr1	125475874	125476874	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-40647.0	NM_001205385	74117.0	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	7.44	3.23	7.4	6.07	3.27	5.63	9.51	6.63	12.49
Merged-chr9-46066859-1	chr9	46066359	46067359	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	54039.0	NM_027498	70661.0	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	10.3	3.69	11.1	8.77	5.13	3.22	12.67	8.4	8.74
Merged-chr4-150099110-1	chr4	150098610	150099610	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177366, intron 2 of 3)	intron (NM_177366, intron 2 of 3)	11607.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	2.86	3.69	1.85	1.35	3.27	2.41	3.17	3.54	1.25
Merged-chr14-55011982-1	chr14	55011482	55012482	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-3472.0	NM_026890	68966.0	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	4.58	5.99	7.4	4.05	2.8	4.02	4.22	3.54	0.0
Merged-chr5-99233367-1	chr5	99232867	99233867	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 6 of 13)	intron (NM_181318, intron 6 of 13)	19560.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	37.18	48.84	48.1	39.81	25.66	41.8	53.87	50.85	32.48
Merged-chr11-54064659-1	chr11	54064159	54065159	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019417, intron 1 of 6)	intron (NM_019417, intron 1 of 6)	4358.0	NM_019417	30794.0	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	7.44	7.37	5.55	14.84	3.73	8.04	3.17	0.88	6.25
Merged-chr2-71882714-1	chr2	71882214	71883214	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360002, intron 3 of 10)	T-rich|Low_complexity|Low_complexity	7810.0	NM_001360002	228026.0	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	8.58	0.92	2.77	2.7	0.93	3.22	28.52	42.45	25.61
Merged-chr9-104270158-1	chr9	104269658	104270658	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-7228.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	37.18	33.18	19.42	29.01	29.86	26.53	48.58	39.35	39.35
Merged-chr6-43462010-1	chr6	43461510	43462510	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_045988, intron 1 of 2)	L1MA5|LINE|L1	19581.0	NR_045988	319812.0	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	18.88	19.81	15.72	15.52	23.79	21.7	19.01	19.9	19.98
Merged-chr10-115248117-1	chr10	115247617	115248617	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025706, intron 1 of 16)	MTD|LTR|ERVL-MaLR	3376.0	NM_025706	66687.0	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	9.72	6.91	0.0	4.05	10.73	15.27	1.06	2.21	6.25
Merged-chr7-100215495-1	chr7	100214995	100215995	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12112.0	NM_027629	70974.0	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	26.31	41.93	27.75	58.7	48.98	56.27	48.58	59.25	33.1
Merged-chr4-141553737-1	chr4	141553237	141554237	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	7575.0	NR_030695	320456.0	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	26.89	15.67	35.15	22.27	10.73	20.9	34.85	28.3	19.36
Merged-chr16-21651964-1	chr16	21651464	21652464	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001001881, exon 2 of 2)	3' UTR (NM_001001881, exon 2 of 2)	42701.0	NM_001001881	72190.0	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	9.15	11.06	11.1	9.45	13.53	23.31	14.79	8.4	3.12
Merged-chr12-41149220-1	chr12	41148720	41149720	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	125130.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.29	9.22	3.7	6.75	8.4	3.22	1.06	3.54	2.5
Merged-chr11-34051643-1	chr11	34051143	34052143	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010696, intron 2 of 20)	L3|LINE|CR1	4715.0	NM_010696	16822.0	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	48.62	64.51	54.57	44.53	31.72	60.28	58.09	58.37	43.09
Merged-chr9-89973902-1	chr9	89973402	89974402	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357743, intron 8 of 26)	intron (NM_001357743, intron 8 of 26)	64127.0	NM_001357743	19417.0	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	8.01	1.38	0.0	3.37	0.93	3.22	2.11	1.77	1.87
Merged-chr14-20257141-1	chr14	20256641	20257641	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	12021.0	NM_029006	74571.0	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	2.29	0.92	2.77	2.02	0.93	0.0	3.17	0.44	0.0
Merged-chr13-108316960-1	chr13	108316460	108317460	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_178683, intron 1 of 10)	intron (NM_178683, intron 1 of 10)	623.0	NM_178683	218581.0	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	10.87	11.06	3.7	14.17	6.06	11.25	11.62	8.84	9.99
Merged-chr2-84633343-1	chr2	84632843	84633843	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007615, intron 1 of 19)	intron (NM_007615, intron 1 of 19)	16137.0	NM_001355065	12388.0	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	72.08	48.84	30.52	43.18	29.39	61.89	49.64	46.43	41.84
Merged-chr17-27702592-1	chr17	27702092	27703092	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001286743, intron 2 of 9)	CpG	17353.0	NM_178365	23969.0	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	3.43	3.69	0.0	1.35	2.8	1.61	3.17	6.19	2.5
Merged-chr15-83157498-1	chr15	83156998	83157998	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	7853.0	NR_004432	104307.0	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	2.29	2.76	5.55	2.02	2.8	0.8	4.22	1.33	5.0
Merged-chr17-23742652-1	chr17	23742152	23743152	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_028416, exon 7 of 10)	exon (NM_028416, exon 7 of 10)	-2322.0	NM_023824	76498.0	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	1.14	0.92	1.85	1.35	0.0	5.63	3.17	0.88	3.12
Merged-chr10-4433575-1	chr10	4433075	4434075	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_024261, intron 1 of 4)	intron (NM_024261, intron 1 of 4)	970.0	NM_024261	73419.0	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	30.32	32.72	17.57	23.62	30.32	39.39	35.91	30.51	14.99
Merged-chr15-86283323-1	chr15	86282823	86283823	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358062, intron 1 of 9)	intron (NM_001358062, intron 1 of 9)	5648.0	NM_001358062	223754.0	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	7.44	4.15	11.1	4.05	5.6	2.41	5.28	3.98	6.87
Merged-chr18-4236417-1	chr18	4235917	4236917	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	70585.0	NM_026092	67328.0	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	12.01	8.75	7.4	2.7	3.73	2.41	12.67	3.98	3.75
Merged-chr5-140827629-1	chr5	140827129	140828129	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010302, intron 1 of 3)	intron (NM_010302, intron 1 of 3)	2802.0	NM_010302	14673.0	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	26.31	31.33	27.75	22.94	33.12	40.19	27.46	18.57	18.11
Merged-chr18-77797748-1	chr18	77797248	77798248	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-1358.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	92.1	78.79	74.0	98.51	53.65	64.3	102.45	84.01	51.21
Merged-chr9-21840383-1	chr9	21839883	21840883	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_177030, intron 9 of 49)	intron (NM_177030, intron 9 of 49)	4873.0	NM_001080940	624219.0	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.57	3.23	1.85	2.02	0.93	0.0	4.22	1.33	1.87
Merged-chr6-38806524-1	chr6	38806024	38807024	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 2 of 14)	intron (NM_010433, intron 2 of 14)	30787.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	33.18	57.6	46.25	86.36	52.72	66.71	41.19	42.01	31.23
Merged-chr11-46449959-1	chr11	46449459	46450459	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-4972.0	NM_134250	171285.0	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	6.29	3.23	0.92	5.4	5.6	4.82	5.28	7.07	3.75
Merged-chr13-35074294-1	chr13	35073794	35074794	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	L1_Mur3|LINE|L1	-80150.0	NM_001110331	23986.0	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	21.17	28.11	21.27	11.47	17.26	12.86	13.73	13.27	20.61
Merged-chr4-132113579-1	chr4	132113079	132114079	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_013622, exon 3 of 3)	exon (NM_013622, exon 3 of 3)	30907.0	NM_013622	18386.0	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	2.29	2.3	5.55	8.1	4.2	6.43	7.39	2.65	2.5
Merged-chr17-45586573-3	chr17	45586057	45587057	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199113, intron 12 of 13)	B3A|SINE|B2	5836.0	NM_022880	63959.0	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	24.6	19.35	36.07	16.87	22.86	47.42	23.24	31.39	29.98
Merged-chr19-58918798-1	chr19	58918298	58919298	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-7039.0	NR_037247	100526480.0		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	5.72	2.76	0.0	3.37	1.87	0.8	13.73	6.63	11.24
Merged-chr16-55954320-1	chr16	55953820	55954820	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	LTRIS_Mus|LTR|ERV1	-11955.0	NM_024218	68193.0	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	2.29	0.46	5.55	2.02	0.47	0.0	2.11	7.07	4.37
Merged-chr10-60351942-1	chr10	60351442	60352442	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028732, intron 1 of 6)	intron (NM_028732, intron 1 of 6)	5091.0	NM_028732	74048.0	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	36.61	29.49	30.52	35.76	22.86	28.94	19.01	18.57	17.49
Merged-chr12-41194890-1	chr12	41194390	41195390	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	170800.0	NM_053122	93757.0	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	9.72	12.9	7.4	10.12	5.13	3.22	8.45	7.52	3.75
Merged-chr8-22566352-1	chr8	22565852	22566852	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011394, intron 10 of 10)	intron (NM_011394, intron 10 of 10)	27461.0	NM_001198998	22335.0	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	4.0	0.92	0.92	1.35	0.0	4.82	1.06	1.77	6.25
Merged-chr14-55745056-1	chr14	55744556	55745556	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026403)	promoter-TSS (NM_026403)	628.0	NM_026819	52585.0	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	61.21	80.18	65.67	66.8	48.05	79.58	82.38	114.08	73.69
Merged-chr11-54626686-1	chr11	54626186	54627186	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	exon (NM_175258, exon 11 of 28)	exon (NM_175258, exon 11 of 28)	30540.0	NM_001252497	192786.0	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	107.55	200.9	109.14	124.15	112.9	113.33	123.57	173.33	86.81
Merged-chr6-87533827-1	chr6	87533327	87534327	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001286610)	promoter-TSS (NM_001286610)	-568.0	NM_001286610	232201.0	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	169.33	190.76	189.62	171.38	122.23	156.74	177.44	216.66	149.26
Merged-chr6-53721805-1	chr6	53721305	53722305	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	99020.0	NM_025817	66873.0	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	1.72	1.38	1.85	5.4	3.27	1.61	1.06	0.44	1.25
Merged-chr12-106055991-1	chr12	106055491	106056491	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001029843, intron 6 of 13)	intron (NM_001029843, intron 6 of 13)	45728.0	NM_001029843	22367.0	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	5.72	3.23	3.7	3.37	1.4	2.41	2.11	2.21	1.25
Merged-chr14-70963719-1	chr14	70963219	70964219	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	73612.0	NM_001302094	14586.0	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	12.01	20.74	18.5	23.62	20.06	25.72	12.67	8.4	9.37
Merged-chr13-64190550-1	chr13	64190050	64191050	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	28684.0	NM_019986	56541.0	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	9.15	1.84	0.0	5.4	0.47	4.02	4.22	0.88	2.5
Merged-chr7-99917861-1	chr7	99917361	99918361	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001164258)	TTS (NM_001164258)	58643.0	NM_001164258	446101.0	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	8.58	1.38	1.85	6.75	0.47	9.65	4.22	0.0	3.12
Merged-chr2-165983600-1	chr2	165983100	165984100	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9037.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	152.17	141.0	113.77	163.96	124.09	139.86	165.82	204.28	99.3
Merged-chr14-30322511-1	chr14	30322011	30323011	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	30975.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	5.15	5.99	0.0	3.37	6.06	4.82	7.39	0.44	1.87
Merged-chr2-181213162-1	chr2	181212662	181213662	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011481)	promoter-TSS (NM_011481)	9.0	NM_011481	20811.0	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	4.0	2.76	0.0	5.4	1.87	1.61	5.28	0.88	5.0
Merged-chr11-53463700-1	chr11	53463200	53464200	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001290789, exon 2 of 7)	exon (NM_001290789, exon 2 of 7)	6495.0	NM_027917	71774.0	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	4.0	1.84	11.1	3.37	2.8	3.22	0.0	0.44	7.49
Merged-chr6-49057941-1	chr6	49057441	49058441	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_053110, exon 11 of 11)	3' UTR (NM_053110, exon 11 of 11)	-15854.0	NM_029353	75593.0	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	2.86	2.76	0.0	2.02	3.27	1.61	0.0	0.44	1.25
Merged-chr19-47050683-1	chr19	47050183	47051183	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_027654, exon 1 of 10)	exon (NM_027654, exon 1 of 10)	223.0	NM_001360632	71041.0	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	5.15	5.07	11.1	12.82	9.33	14.47	15.84	7.52	9.99
Merged-chr15-53474797-1	chr15	53474297	53475297	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177225, intron 4 of 4)	intron (NM_177225, intron 4 of 4)	-128614.0	NM_010162	14042.0	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	24.03	17.97	9.25	14.84	15.39	23.31	7.39	11.05	14.36
Merged-chr8-80029629-1	chr8	80029129	80030129	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	28379.0	NM_020259	15245.0	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	9.72	11.52	18.5	6.07	2.33	9.65	9.51	11.94	5.0
Merged-chr2-92250642-1	chr2	92250142	92251142	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001109690, intron 3 of 15)	intron (NM_001109690, intron 3 of 15)	29080.0	NM_001109690	192285.0	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	1.72	4.15	9.25	15.52	11.66	7.23	3.17	7.96	6.25
Merged-chr1-171767096-1	chr1	171766596	171767596	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013730)	promoter-TSS (NM_013730)	-36.0	NM_013730	27218.0	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	8.01	3.23	7.4	7.42	3.73	1.61	3.17	7.52	5.0
Merged-chr11-106317556-1	chr11	106317056	106318056	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2994.0	NM_001313939	15985.0	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	9.72	5.07	7.4	8.77	7.0	8.04	1.06	3.54	8.74
Merged-chr2-51268741-1	chr2	51268241	51269241	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040636, intron 1 of 2)	intron (NR_040636, intron 1 of 2)	26910.0	NR_040636	329404.0	Mm.417725	NR_040636	ENSMUSG00000086349	Gm13497	A730015I17	predicted gene 13497	ncRNA	7.44	2.3	7.4	4.05	4.67	0.0	2.11	3.54	7.49
Merged-chr17-32162307-1	chr17	32161807	32162807	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008716, intron 2 of 32)	CpG	4545.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.58	1.84	3.7	2.7	2.33	0.0	3.17	2.21	3.75
Merged-chr3-152152091-1	chr3	152151591	152152591	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_016867, intron 1 of 5)	intron (NM_016867, intron 1 of 5)	13809.0	NM_016867	54120.0	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	10.87	1.84	3.7	3.37	0.93	2.41	3.17	0.88	6.25
Merged-chr4-132636693-1	chr4	132636193	132637193	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	-2353.0	NM_210071	14050.0	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	6.29	5.53	2.77	12.14	3.73	4.82	5.28	1.33	0.62
Merged-chr9-50885417-1	chr9	50884917	50885917	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286553, intron 15 of 16)	intron (NM_001286553, intron 15 of 16)	28493.0	NM_001286553	73699.0	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	16.02	8.75	12.95	11.47	10.26	1.61	4.22	5.31	3.75
Merged-chr12-98261372-1	chr12	98260872	98261872	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTEa|LTR|ERVL-MaLR	-1913.0	NM_008079	14420.0	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	9.15	13.82	14.8	18.89	6.53	13.66	14.79	7.52	5.62
Merged-chrX-73439857-1	chrX	73439357	73440357	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028633, intron 9 of 9)	intron (NM_028633, intron 9 of 9)	-4514.0	NM_011907	24102.0	Mm.23312	NM_011907	ENSMUSG00000031372	Trex2	-	three prime repair exonuclease 2	protein-coding	4.0	3.23	15.72	2.02	1.4	1.61	4.22	1.77	2.5
Merged-chr6-29929709-1	chr6	29929209	29930209	+	547.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037740, intron 8 of 20)	Lx9|LINE|L1	12696.0	NM_001037740	320609.0	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	9.72	5.53	7.4	4.05	2.8	0.8	6.34	3.98	8.74
Merged-chr4-81743196-1	chr4	81742696	81743696	+	547.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-256183.0	NR_030570	100124446.0		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	20.02	20.74	10.17	28.34	20.99	26.53	13.73	22.55	21.86
Merged-chr17-32074690-1	chr17	32074190	32075190	+	547.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	16733.0	NR_027316	435518.0	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	8.01	5.07	7.4	4.72	0.47	0.0	3.17	0.0	2.5
Merged-chr6-123185066-2	chr6	123184583	123185583	+	546.75	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004159, intron 3 of 5)	Lx8|LINE|L1	12060.0	NM_001004159	381809.0	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	9.15	4.61	2.77	5.4	3.27	4.02	2.11	2.21	2.5
Merged-chr1-180192018-2	chr1	180191527	180192527	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023341, intron 1 of 14)	intron (NM_023341, intron 1 of 14)	1458.0	NM_001163290	67426.0	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	4.58	5.53	11.1	6.07	2.8	8.84	5.28	4.42	1.25
Merged-chr2-75636925-1	chr2	75636425	75637425	+	546.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-22334.0	NM_146130	229279.0	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	5.72	1.84	3.7	2.02	3.73	2.41	2.11	2.65	7.49
Merged-chr15-103488489-1	chr15	103487989	103488989	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153505, intron 26 of 30)	intron (NM_153505, intron 26 of 30)	-14545.0	NM_008800	18574.0	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	9.72	15.21	23.12	9.45	5.6	11.25	7.39	5.75	8.74
Merged-chr1-136136250-1	chr1	136135750	136136750	+	546.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039472, intron 1 of 34)	URR1B|DNA|hAT-Charlie	4860.0	NR_153829	16565.0	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	89.81	113.35	86.02	70.85	65.78	122.98	148.92	187.48	76.19
Merged-chrX-167204564-2	chrX	167204071	167205071	+	546.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	4647.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	26.89	43.77	22.2	33.06	25.19	36.97	32.74	39.8	46.22
Merged-chr1-153480595-3	chr1	153480094	153481094	+	546.333313	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007842, intron 4 of 27)	B3|SINE|B2	7066.0	NM_007842	13211.0	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	11.44	7.83	5.55	9.45	4.2	7.23	3.17	7.52	8.12
Merged-chr2-11662302-1	chr2	11661802	11662802	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008367, intron 1 of 7)	intron (NM_008367, intron 1 of 7)	19510.0	NM_008367	16184.0	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	8.01	1.84	3.7	3.37	7.46	2.41	5.28	2.21	2.5
Merged-chr1-161376935-1	chr1	161376435	161377435	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-18503.0	NM_009452	22164.0	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	4.58	1.38	3.7	6.07	2.33	1.61	2.11	0.88	0.0
Merged-chr14-84442716-1	chr14	84442216	84443216	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013753)	promoter-TSS (NM_001013753)	-847.0	NM_001013753	219228.0	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	2.86	1.38	0.0	6.07	0.47	2.41	2.11	0.44	3.75
Merged-chr19-36915855-1	chr19	36915355	36916355	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	3744.0	NM_028263	72514.0	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	6.86	4.61	1.85	4.72	2.8	6.43	10.56	7.52	5.0
Merged-chr2-6706381-2	chr2	6705886	6706886	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001110232, intron 4 of 15)	RSINE1|SINE|B4	15276.0	NM_001310447	14007.0	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	108.12	132.25	90.65	114.03	108.7	72.34	160.54	156.53	84.94
Merged-chr2-35111171-1	chr2	35110671	35111671	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_012018, intron 1 of 43)	intron (NM_012018, intron 1 of 43)	1679.0	NM_012018	26920.0	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	37.18	34.56	25.9	42.51	25.19	12.06	29.57	30.51	25.61
Merged-chr5-41281166-1	chr5	41280666	41281666	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	426525.0	NM_001310592	100972.0	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	3.43	0.92	0.0	2.7	2.8	3.22	2.11	0.44	0.0
Merged-chrX-60356784-1	chrX	60356284	60357284	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001359002, intron 1 of 29)	intron (NM_001359002, intron 1 of 29)	37708.0	NR_030499	751545.0		NR_030499	ENSMUSG00000070081	Mir505	Mirn505|mir-505|mmu-mir-505	microRNA 505	ncRNA	5.72	23.04	11.1	9.45	14.0	9.65	11.62	10.61	18.11
Merged-chr17-27622580-1	chr17	27622080	27623080	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_019837, intron 1 of 4)	intron (NM_019837, intron 1 of 4)	384.0	NM_001291046	56409.0	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	80.66	59.44	51.8	88.39	82.57	127.0	85.55	78.26	46.22
Merged-chr12-73341096-1	chr12	73340596	73341596	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 8 of 15)	intron (NM_001037717, intron 8 of 15)	54248.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.43	9.22	5.55	3.37	8.86	21.7	9.51	8.4	9.99
Merged-chr19-36555213-1	chr19	36554713	36555713	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163471, intron 1 of 20)	intron (NM_001163471, intron 1 of 20)	574.0	NM_172637	226098.0	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain E3 ubiquitin protein ligase 2	protein-coding	5.72	3.69	5.55	6.07	5.6	0.0	4.22	1.33	2.5
Merged-chr17-15529080-1	chr17	15528580	15529580	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1779.0	NM_008799	18567.0	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	4.58	5.53	7.4	3.37	2.33	4.02	4.22	4.86	1.25
Merged-chr10-80358298-1	chr10	80357798	80358798	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001347124, exon 3 of 15)	exon (NM_001347124, exon 3 of 15)	1839.0	NM_001347124	216166.0	Mm.17613	NM_183152	ENSMUSG00000035486	Plk5	6330514A18Rik	polo like kinase 5	protein-coding	2.29	2.76	0.92	2.02	2.8	0.0	1.06	0.0	0.62
Merged-chr6-8021742-1	chr6	8021242	8022242	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001037865, intron 30 of 34)	intron (NM_001037865, intron 30 of 34)	170875.0	NM_001037865	213945.0	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	9.72	12.9	12.02	2.7	1.4	4.82	2.11	0.0	0.0
Merged-chr3-142263884-1	chr3	142263384	142264384	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001190854, intron 8 of 12)	MTB_Mm|LTR|ERVL-MaLR	-94459.0	NM_001277216	12167.0	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.0	5.53	3.7	3.37	3.27	4.82	4.22	5.31	7.49
Merged-chr8-86830359-1	chr8	86829859	86830859	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	PB1D10|SINE|Alu	54899.0	NM_030563	80750.0	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	9.72	7.83	12.95	14.84	14.93	16.08	16.9	1.77	4.37
Merged-chr2-71318733-1	chr2	71318233	71319233	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_172436, intron 5 of 17)	A-rich|Low_complexity|Low_complexity	48821.0	NM_172436	78830.0	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	14.3	11.06	16.65	9.45	8.86	13.66	28.52	15.48	14.36
Merged-chr5-35215729-1	chr5	35215229	35216229	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-62837.0	NM_007418	11553.0	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	4.0	2.76	2.77	2.02	1.87	3.22	7.39	2.21	4.37
Merged-chr15-57926576-1	chr15	57926076	57927076	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356310, intron 3 of 19)	intron (NM_001356310, intron 3 of 19)	14377.0	NM_001356310	210544.0	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	80.09	116.12	60.12	105.93	69.51	55.46	107.73	155.64	51.21
Merged-chrX-167205378-1	chrX	167204878	167205878	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3840.0	NM_021278	19241.0	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4|Tbeta4	thymosin, beta 4, X chromosome	protein-coding	22.88	29.95	25.9	27.66	16.79	29.74	19.01	30.51	31.23
Merged-chr4-53862109-1	chr4	53861609	53862609	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028053)	TTS (NM_028053)	36064.0	NM_028053	52076.0	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	2.29	4.61	11.1	6.75	9.33	6.43	5.28	5.75	5.0
Merged-chr7-141193720-1	chr7	141193220	141194220	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001172064)	promoter-TSS (NM_001172064)	284.0	NM_001130444	15461.0	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	29.75	20.27	19.42	39.81	20.99	40.19	34.85	17.24	16.24
Merged-chr12-52010708-1	chr12	52010208	52011208	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	AT_rich|Low_complexity|Low_complexity	-4201.0	NM_001347404	328092.0	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	2.29	1.84	0.0	6.07	2.8	4.02	3.17	3.98	5.0
Merged-chr16-18348812-1	chr16	18348312	18349312	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359108)	promoter-TSS (NM_001359108)	630.0	NM_001272029	11877.0	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velocardiofacial syndrome	protein-coding	6.86	3.69	9.25	10.12	3.27	4.02	4.22	3.98	0.0
Merged-chr18-75214717-1	chr18	75214217	75215217	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	82600.0	NR_045394	100503117.0	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	9.15	1.38	1.85	5.4	3.27	6.43	1.06	1.77	5.0
Merged-chr7-30594276-1	chr7	30593776	30594776	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153655, intron 1 of 3)	intron (NR_153655, intron 1 of 3)	-1334.0	NM_021397	58206.0	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	20.02	6.45	9.25	6.07	7.0	8.04	12.67	3.54	14.36
Merged-chr2-92007633-1	chr2	92007133	92008133	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011957, intron 1 of 11)	intron (NM_011957, intron 1 of 11)	16537.0	NM_011957	26427.0	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	5.15	3.69	6.47	10.8	3.27	13.66	4.22	1.33	6.87
Merged-chr6-82916059-1	chr6	82915559	82916559	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001308374, intron 11 of 12)	B3|SINE|B2	23710.0	NM_001308374	20355.0	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	2.86	2.76	0.0	6.07	1.4	0.0	8.45	3.1	0.62
Merged-chr11-63924284-1	chr11	63923784	63924784	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2000.0	NM_018805	54710.0	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	9.72	3.23	0.0	8.1	2.33	4.02	15.84	6.19	9.99
Merged-chr1-127982170-1	chr1	127981670	127982670	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001285945, intron 12 of 20)	B4A|SINE|B4	113397.0	NM_178690	226407.0	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	24.03	30.87	33.3	50.6	38.72	32.15	54.92	44.66	24.36
Merged-chr13-37295509-1	chr13	37295009	37296009	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49836.0	NM_010745	17084.0	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.0	3.23	0.92	0.67	7.46	1.61	2.11	3.1	3.75
Merged-chr5-43276636-1	chr5	43276136	43277136	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177379, intron 5 of 10)	intron (NM_001177379, intron 5 of 10)	-41282.0	NR_028417	665934.0	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934	predicted gene 7854	ncRNA	6.29	3.23	3.7	4.05	3.27	3.22	16.9	3.54	8.12
Merged-chr1-162624111-1	chr1	162623611	162624611	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15039.0	NM_010865	17926.0	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	6.86	5.99	9.25	37.78	23.33	19.29	12.67	7.52	1.87
Merged-chr8-57427369-1	chr8	57426869	57427869	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	-28554.0	NM_009136	20284.0	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	6.29	6.91	5.55	8.77	9.8	8.04	2.11	0.44	1.25
Merged-chr2-6309613-1	chr2	6309113	6310113	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040333, intron 4 of 6)	MLT1I|LTR|ERVL-MaLR	-13144.0	NM_001080548	98910.0	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	4.58	2.3	1.85	6.07	3.73	6.43	7.39	3.54	3.75
Merged-chr1-88272947-1	chr1	88272447	88273447	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198652, intron 3 of 7)	intron (NM_198652, intron 3 of 7)	-3539.0	NR_040291	78605.0	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	6.86	8.29	7.4	6.75	5.13	18.49	8.45	11.94	10.62
Merged-chr9-53818939-1	chr9	53818439	53819439	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_028060)	TTS (NM_028060)	-31312.0	NM_025540	66402.0	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	4.58	0.92	5.55	2.7	0.93	0.0	1.06	0.0	3.75
Merged-chr5-32159889-1	chr5	32159389	32160389	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23417.0	NM_008037	14284.0	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	3.43	5.53	12.02	2.7	3.27	16.08	3.17	0.0	13.74
Merged-chr4-148681669-1	chr4	148681169	148682169	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	38352.0	NM_001085505	230909.0	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	4.0	2.76	0.0	4.05	3.73	1.61	2.11	1.77	2.5
Merged-chr2-160653149-1	chr2	160652649	160653649	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 2 of 20)	intron (NM_009408, intron 2 of 20)	7252.0	NM_009408	21969.0	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	14.3	9.22	3.7	8.1	7.93	4.02	7.39	6.19	8.12
Merged-chr4-3800131-1	chr4	3799631	3800631	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	35524.0	NM_026147	67427.0	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	1.72	3.69	16.65	3.37	3.73	4.02	4.22	3.54	8.74
Merged-chr15-99396902-1	chr15	99396402	99397402	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001171036, intron 2 of 10)	intron (NM_001171036, intron 2 of 10)	3683.0	NM_001171035	110213.0	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	36.61	52.07	24.97	74.22	66.24	80.38	38.02	42.89	29.98
Merged-chr10-93182037-1	chr10	93181537	93182537	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_146239, intron 1 of 16)	intron (NM_146239, intron 1 of 16)	19252.0	NR_035452	100316689.0		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	10.87	9.22	11.1	17.54	13.53	6.43	7.39	3.98	12.49
Merged-chr11-75159740-1	chr11	75159240	75160240	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001002764, intron 17 of 18)	intron (NM_001002764, intron 17 of 18)	8412.0	NM_001098203	15248.0	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	16.02	6.45	11.1	7.42	3.73	22.51	8.45	3.98	3.75
Merged-chrX-101419184-1	chrX	101418684	101419684	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177987, intron 1 of 6)	intron (NM_001177987, intron 1 of 6)	730.0	NM_001177986	56364.0	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	17.73	10.6	14.8	21.59	10.26	25.72	17.96	11.5	13.74
Merged-chr7-49135251-1	chr7	49134751	49135751	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_154465, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	26907.0	NR_154465	108167511.0	Mm.400599	NR_154465		9130015G15Rik	-	RIKEN cDNA 9130015G15 gene	ncRNA	2.29	1.84	4.62	5.4	2.8	8.84	3.17	2.21	1.25
Merged-chr7-125472585-1	chr7	125472085	125473085	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001360659, intron 2 of 7)	intron (NM_001360659, intron 2 of 7)	18957.0	NM_001360659	67711.0	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	26.89	40.55	35.15	24.96	32.19	34.56	59.15	44.66	36.22
Merged-chr12-17796105-1	chr12	17795605	17796605	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	105296.0	NM_016677	53602.0	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVL-3|NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.72	6.45	1.85	1.35	2.33	0.0	7.39	2.65	8.12
Merged-chr9-106160923-1	chr9	106160423	106161423	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2785.0	NM_174846	235582.0	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	80.09	104.6	87.87	95.14	93.3	86.81	66.54	57.04	41.22
Merged-chr9-47439135-1	chr9	47438635	47439635	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B4A|SINE|B4	-91035.0	NM_001310841	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.29	1.84	3.7	4.05	0.0	1.61	2.11	0.88	0.0
Merged-chr16-15889683-1	chr16	15889183	15890183	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_007679)	TTS (NM_007679)	2397.0	NM_007679	12609.0	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	46.34	59.44	38.85	27.66	25.66	40.19	52.81	54.39	51.84
Merged-chr2-10374083-1	chr2	10373583	10374583	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177386, intron 1 of 22)	CpG	1647.0	NM_177386	353282.0	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	7.44	1.84	1.85	4.72	1.87	3.22	4.22	3.1	5.62
Merged-chr2-173081053-1	chr2	173080553	173081553	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	C-rich|Low_complexity|Low_complexity	38472.0	NM_001081387	664799.0	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris	CCCTC-binding factor (zinc finger protein)-like	protein-coding	1.72	1.38	5.55	4.05	1.4	0.0	1.06	1.77	5.0
Merged-chr6-6580650-1	chr6	6580150	6581150	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	-1992.0	NM_009169	20422.0	Mm.2469	NM_009169	ENSMUSG00000042541	Sem1	DSS1|Shfdg1|Shfg|Shfm1	SEM1, 26S proteasome complex subunit	protein-coding	8.01	1.38	0.92	2.02	3.27	0.0	2.11	0.44	5.0
Merged-chr11-55459927-1	chr11	55459427	55460427	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009720, intron 1 of 3)	intron (NM_009720, intron 1 of 3)	1281.0	NM_009720	11927.0	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	35.47	27.65	36.07	34.41	13.53	32.96	25.35	19.9	22.48
Merged-chr9-44569789-2	chr9	44569275	44570275	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-35117.0	NM_001110826	13209.0	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	43.48	32.25	20.35	43.18	19.59	44.21	55.98	61.02	46.22
Merged-chr2-121124905-1	chr2	121124405	121125405	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15114.0	NM_001160424	640543.0	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	3.43	4.15	7.4	2.7	4.67	3.22	5.28	3.98	5.0
Merged-chr2-52979720-1	chr2	52979220	52980220	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	ORR1D2|LTR|ERVL-MaLR	121852.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	17.73	16.59	12.02	22.27	14.46	16.08	15.84	8.4	1.25
Merged-chr14-27229615-1	chr14	27229115	27230115	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289686, intron 3 of 12)	intron (NM_001289686, intron 3 of 12)	-8395.0	NM_027871	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	27.46	20.74	8.32	39.81	13.06	9.65	7.39	12.82	12.49
Merged-chrX-109123002-1	chrX	109122502	109123502	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019989, intron 1 of 3)	intron (NM_019989, intron 1 of 3)	27595.0	NM_019989	56726.0	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	19.45	19.35	7.4	18.89	11.2	12.06	21.12	14.59	11.24
Merged-chr8-11271009-1	chr8	11270509	11271509	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009931, intron 1 of 51)	intron (NM_009931, intron 1 of 51)	-41796.0	NM_009932	12827.0	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.29	2.76	7.4	4.05	4.67	5.63	0.0	1.33	4.37
Merged-chr5-123280462-1	chr5	123279962	123280962	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	52272.0	NM_026000	67151.0	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	8.01	4.15	12.02	3.37	2.8	4.82	0.0	3.54	1.25
Merged-chr3-109354117-1	chr3	109353617	109354617	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	13434.0	NM_020505	57257.0	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	4.58	4.15	7.4	6.75	5.13	1.61	1.06	5.31	12.49
Merged-chr9-31151272-1	chr9	31150772	31151772	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357698, intron 17 of 17)	intron (NM_001357698, intron 17 of 17)	-19473.0	NM_011176	19143.0	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	10.87	3.23	1.85	2.7	2.8	0.0	1.06	1.33	0.0
Merged-chr17-83512976-1	chr17	83512476	83513476	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009187, intron 1 of 2)	intron (NM_009187, intron 1 of 2)	1357.0	NM_009187	20463.0	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	33.18	30.87	22.2	19.57	14.93	16.08	44.36	49.96	34.35
Merged-chr6-116345331-1	chr6	116344831	116345831	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302385, intron 2 of 6)	intron (NM_001302385, intron 2 of 6)	7309.0	NM_001302383	71779.0	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	17.16	10.6	14.8	7.42	7.93	16.08	15.84	6.19	6.87
Merged-chr14-54230831-2	chr14	54230331	54231331	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	23098.0	NM_001113358	13135.0	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	5.72	5.07	3.7	5.4	12.13	3.22	6.34	3.54	6.25
Merged-chr13-37964240-1	chr13	37963740	37964740	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29968.0	NM_025965	107513.0	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	109.26	80.64	71.22	91.09	48.52	92.44	81.33	54.39	39.97
Merged-chr1-133087841-1	chr1	133087341	133088341	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001099276, intron 15 of 32)	intron (NM_001099276, intron 15 of 32)	41829.0	NM_001099276	240752.0	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta	protein-coding	6.29	3.23	0.0	0.0	0.0	0.0	1.06	1.33	5.0
Merged-chr3-88144185-1	chr3	88143685	88144685	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310593, intron 1 of 10)	intron (NM_001310593, intron 1 of 10)	1813.0	NM_133665	17261.0	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	31.46	31.79	21.27	45.21	27.99	37.78	38.02	26.09	27.48
Merged-chr7-110646080-1	chr7	110645580	110646580	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	18423.0	NM_009627	11535.0	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	6.29	0.46	1.85	9.45	3.27	0.0	4.22	0.44	6.25
Merged-chr5-25221849-1	chr5	25221349	25222349	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1023.0	NM_144908	231050.0	Mm.246718	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	4.0	6.45	1.85	10.8	9.8	15.27	14.79	7.96	9.99
Merged-chr4-154943907-1	chr4	154943407	154944407	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-15830.0	NM_178931	230979.0	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	249.99	262.19	205.34	234.13	212.26	184.07	133.08	139.72	66.82
Merged-chr10-94960995-1	chr10	94960495	94961495	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	URR1B|DNA|hAT-Charlie	-16417.0	NM_018797	54712.0	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	12.59	7.37	12.95	43.86	24.72	14.47	16.9	9.73	5.0
Merged-chr1-51518842-1	chr1	51518342	51519342	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	-40443.0	NM_001310549	109019.0	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	15.45	26.73	44.4	17.54	22.39	45.01	17.96	13.27	21.23
Merged-chr19-6283249-1	chr19	6282749	6283749	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	intron (NM_010119, intron 2 of 4)	6353.0	NM_010119	13660.0	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	7.44	5.53	5.55	6.07	0.93	0.0	4.22	4.86	1.25
Merged-chrX-52791182-1	chrX	52790682	52791682	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001034059)	promoter-TSS (NM_001034059)	-18.0	NM_001034059	434778.0	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	2.86	1.38	1.85	0.67	0.93	0.8	2.11	1.33	1.87
Merged-chr3-135628942-1	chr3	135628442	135629442	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008689, intron 6 of 24)	intron (NM_008689, intron 6 of 24)	62605.0	NM_008689	18033.0	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	44.05	48.84	28.67	39.13	28.46	39.39	45.42	44.66	40.59
Merged-chr6-97360187-1	chr6	97359687	97360687	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145148, intron 6 of 23)	intron (NM_145148, intron 6 of 23)	99099.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	8.01	13.82	12.95	2.7	8.4	14.47	10.56	11.94	12.49
Merged-chr13-70618953-1	chr13	70618453	70619453	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144837, intron 6 of 18)	intron (NM_144837, intron 6 of 18)	18681.0	NM_144837	218333.0	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	12.59	10.6	24.05	13.49	7.46	8.84	9.51	5.31	9.37
Merged-chr4-63151843-1	chr4	63151343	63152343	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007443, intron 2 of 9)	intron (NM_007443, intron 2 of 9)	2329.0	NM_007443	11699.0	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	5.72	4.15	1.85	4.72	1.4	8.04	3.17	1.33	1.25
Merged-chr9-18277635-1	chr9	18277135	18278135	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14632.0	NM_025844	66917.0	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	7.44	5.07	1.85	2.7	1.4	0.0	1.06	4.42	2.5
Merged-chr11-117018637-1	chr11	117018137	117019137	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-58146.0	NR_027059	76972.0	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	1.72	1.38	9.25	1.35	0.93	4.82	1.06	1.33	1.25
Merged-chr7-82820846-1	chr7	82820346	82821346	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-46487.0	NM_175366	108797.0	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	2.86	2.76	5.55	2.7	0.93	1.61	6.34	1.33	7.49
Merged-chr11-9136658-1	chr11	9136158	9137158	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001159402)	TTS (NM_001159402)	18151.0	NM_001159402	22271.0	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	3.43	0.0	1.85	2.02	1.4	3.22	0.0	0.88	1.25
Merged-chr13-112142794-1	chr13	112142294	112143294	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-145657.0	NM_001168403	77318.0	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	3.43	2.76	1.85	2.02	2.33	4.82	3.17	4.86	6.25
Merged-chr2-26578647-2	chr2	26578155	26579155	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2401.0	NM_178444	353156.0	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	5.15	3.23	1.85	4.05	3.27	0.0	6.34	6.63	3.75
Merged-chr8-104369781-1	chr8	104369281	104370281	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153582, intron 1 of 3)	L1MC4|LINE|L1	26026.0	NM_153582	97487.0	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	26.89	29.49	21.27	26.31	30.32	36.97	20.07	16.8	14.36
Merged-chr2-25366179-1	chr2	25365679	25366679	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001033293)	promoter-TSS (NM_001033293)	-516.0	NM_001033293	227620.0	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	28.6	16.59	14.8	44.53	45.72	37.78	27.46	26.53	18.11
Merged-chr2-158534291-1	chr2	158533791	158534791	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145015, intron 5 of 14)	intron (NM_001145015, intron 5 of 14)	21495.0	NM_001145015	545481.0	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203	Rho GTPase activating protein 40	protein-coding	5.72	0.92	5.55	2.7	0.0	4.82	2.11	2.21	1.25
Merged-chr2-26504402-1	chr2	26503902	26504902	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_008714)	promoter-TSS (NM_008714)	475.0	NR_132655	102639736.0		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	38.33	24.42	39.77	69.5	37.32	50.64	34.85	34.93	26.23
Merged-chr2-136919558-1	chr2	136919058	136920058	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355671, intron 2 of 6)	intron (NM_001355671, intron 2 of 6)	20207.0	NM_001038641	74243.0	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.01	4.61	3.7	14.17	5.13	11.25	7.39	7.07	1.25
Merged-chr1-155070038-1	chr1	155069538	155070538	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151545, intron 3 of 6)	intron (NR_151545, intron 3 of 6)	13226.0	NR_151545	671336.0	Mm.393476	NR_151545	ENSMUSG00000096950	Gm9530	-	predicted gene 9530	ncRNA	44.05	32.25	24.97	39.13	24.26	29.74	28.52	30.95	19.36
Merged-chr11-106037469-1	chr11	106036969	106037969	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	597.0	NM_027946	71833.0	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	47.48	47.46	45.32	45.88	48.05	43.4	78.16	72.52	49.34
Merged-chr12-51593469-1	chr12	51592969	51593969	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	5' UTR (NM_007728, exon 1 of 11)	5' UTR (NM_007728, exon 1 of 11)	128.0	NM_001198835	12810.0	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	4.58	1.38	0.0	0.0	1.87	3.22	1.06	0.44	1.25
Merged-chrX-56692743-1	chrX	56692243	56693243	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-39018.0	NM_010211	14199.0	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	2.29	0.0	11.1	1.35	4.2	3.22	2.11	1.33	3.75
Merged-chr11-107625790-1	chr11	107625290	107626290	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_198298, intron 14 of 31)	intron (NM_198298, intron 14 of 31)	-11932.0	NR_105897	102465562.0		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	37.76	34.56	38.85	46.56	46.18	29.74	28.52	38.03	23.11
Merged-chr10-96876539-1	chr10	96876039	96877039	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	-159229.0	NR_045358	75301.0	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	5.15	11.52	9.25	10.8	18.66	24.11	14.79	3.54	8.74
Merged-chr18-58570590-1	chr18	58570090	58571090	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081072, intron 1 of 9)	intron (NM_001081072, intron 1 of 9)	14350.0	NM_001081072	225579.0	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	5.15	6.45	2.77	12.14	5.13	19.29	9.51	7.96	3.75
Merged-chr4-40285851-1	chr4	40285351	40286351	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6430.0	NM_001033305	230075.0	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	4.58	5.99	4.62	8.77	3.27	8.04	6.34	5.75	4.37
Merged-chr19-3955301-1	chr19	3954801	3955801	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3507.0	NM_028545	73458.0	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	1.72	0.92	2.77	7.42	2.8	6.43	3.17	3.98	1.25
Merged-chr10-43173406-1	chr10	43172906	43173906	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175407, intron 1 of 6)	CpG	1124.0	NM_175407	109205.0	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis binding protein	protein-coding	2.29	0.0	15.72	2.02	4.67	0.0	1.06	0.88	5.0
Merged-chr13-103918581-1	chr13	103918081	103919081	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001005868, intron 1 of 26)	intron (NM_001005868, intron 1 of 26)	2005.0	NM_001289473	59079.0	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	34.32	71.88	37.92	43.86	48.98	48.23	90.83	97.28	43.72
Merged-chr7-16974376-1	chr7	16973876	16974876	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	14697.0	NM_001007569	71691.0	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik|4930488B01Rik|AI844408|Pnma8a|R74771	PNMA-like 1	protein-coding	3.43	2.76	0.0	3.37	4.2	1.61	1.06	2.65	1.25
Merged-chr14-55629545-1	chr14	55629045	55630045	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_153402, intron 18 of 28)	intron (NR_153402, intron 18 of 28)	6139.0	NR_153401	75751.0	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	1.72	0.46	1.85	7.42	1.4	1.61	3.17	0.44	3.75
Merged-chr8-107437448-1	chr8	107436948	107437948	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025830, intron 1 of 23)	intron (NM_025830, intron 1 of 23)	1050.0	NM_025830	66894.0	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	44.05	56.22	36.07	45.88	58.31	38.58	61.26	66.77	39.35
Merged-chr12-73044803-1	chr12	73044303	73045303	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009189, intron 1 of 1)	CpG	1909.0	NM_009189	20471.0	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	1.72	2.3	0.0	4.05	4.2	2.41	2.11	0.44	0.0
Merged-chr18-77813846-1	chr18	77813346	77814346	+	546.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_013831, intron 1 of 14)	intron (NM_013831, intron 1 of 14)	-17456.0	NR_152167	619308.0	Mm.490456	NM_001033812		F830208F22Rik	-	RIKEN cDNA F830208F22 gene	ncRNA	6.86	5.07	6.47	13.49	6.53	6.43	5.28	7.07	8.74
Merged-chr13-93793558-1	chr13	93793058	93794058	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009712, intron 2 of 7)	intron (NM_009712, intron 2 of 7)	2781.0	NR_049198	100885837.0		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	5.72	3.69	1.85	1.35	1.87	1.61	7.39	0.44	4.37
Merged-chr19-45746501-1	chr19	45746001	45747001	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3062.0	NM_008723	18150.0	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	5.72	2.3	1.85	2.7	3.27	3.22	0.0	1.77	1.25
Merged-chr18-53247696-1	chr18	53247196	53248196	+	546.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029394, intron 1 of 6)	RSINE1|SINE|B4	2034.0	NM_029394	69226.0	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	143.59	166.8	90.65	174.75	102.17	135.84	178.5	193.67	100.55
Merged-chr11-46442086-1	chr11	46441586	46442586	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_025426, exon 3 of 3)	3' UTR (NM_025426, exon 3 of 3)	5125.0	NM_025426	66213.0	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	14.3	11.06	7.4	8.1	7.93	3.22	5.28	10.61	6.87
Merged-chr13-41614691-1	chr13	41614191	41615191	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163572, intron 1 of 2)	intron (NM_001163572, intron 1 of 2)	8475.0	NM_001163572	621976.0	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	21.74	24.88	25.9	31.04	24.72	29.74	42.25	31.84	19.98
Merged-chr5-99406057-1	chr5	99405557	99406557	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_030692, intron 2 of 3)	intron (NR_030692, intron 2 of 3)	-153130.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	2.86	3.69	1.85	8.77	4.2	6.43	6.34	6.63	3.75
Merged-chr10-59109263-1	chr10	59108763	59109763	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172788, intron 8 of 9)	ERVL-B4-int|LTR|ERVL	112584.0	NM_001024911	103080.0	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	2.29	0.0	0.92	2.02	2.8	2.41	0.0	0.44	0.0
Merged-chr8-26154066-2	chr8	26153568	26154568	+	546.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4101.0	NM_199042	73754.0	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	17.73	22.12	28.67	8.1	8.4	15.27	12.67	15.92	5.0
Merged-chr18-7756935-2	chr18	7756426	7757426	+	545.75	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-111906.0	NM_001282093	225131.0	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	3.43	1.84	1.85	4.05	0.47	1.61	0.0	6.19	5.0
Merged-chr1-170850069-2	chr1	170849538	170850538	+	545.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081304, intron 3 of 15)	intron (NM_001081304, intron 3 of 15)	17733.0	NM_001081304	226641.0	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	41.19	40.09	50.87	18.89	26.12	42.6	24.29	30.51	36.22
Merged-chr17-34642574-1	chr17	34642074	34643074	+	545.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2309.0	NM_019873	56299.0	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	40.04	33.64	34.22	39.13	32.19	30.54	33.8	29.63	21.86
Merged-chr2-157031026-2	chr2	157030519	157031519	+	545.5	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001164663, intron 7 of 14)	intron (NM_001164663, intron 7 of 14)	-23944.0	NM_025853	66934.0	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	5.15	1.38	1.85	3.37	0.93	8.04	5.28	0.88	1.25
Merged-chr11-117826907-1	chr11	117826407	117827407	+	545.5	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_009387)	promoter-TSS (NM_009387)	-893.0	NM_009387	21877.0	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	106.4	104.14	125.79	64.1	57.38	45.01	170.05	230.37	134.9
Merged-chr5-121592614-1	chr5	121592114	121593114	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009656, intron 1 of 12)	intron (NM_009656, intron 1 of 12)	1210.0	NM_009656	11669.0	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	54.35	50.69	37.0	82.99	85.37	60.28	80.27	86.66	47.46
Merged-chr16-13294405-1	chr16	13293905	13294905	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001122667, intron 2 of 16)	intron (NM_001122667, intron 2 of 16)	29326.0	NM_181860	239719.0	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	9.15	6.91	5.55	12.82	6.06	12.86	0.0	0.44	5.0
Merged-chr2-130629200-1	chr2	130628700	130629700	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_080562, intron 1 of 5)	intron (NM_080562, intron 1 of 5)	827.0	NM_198176	380601.0	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	49.2	48.84	21.27	62.75	54.58	37.78	57.03	65.44	20.61
Merged-chr6-38826058-1	chr6	38825558	38826558	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010433, intron 1 of 14)	intron (NM_010433, intron 1 of 14)	11253.0	NM_001136065	15258.0	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.15	5.99	5.55	12.14	8.86	20.9	4.22	7.52	6.25
Merged-chr5-77289838-1	chr5	77289338	77290338	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	17081.0	NR_039557	100628577.0		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	5.72	2.76	2.77	6.75	2.33	8.04	7.39	7.96	3.75
Merged-chr11-86753260-1	chr11	86752760	86753760	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001003908, intron 1 of 31)	intron (NM_001003908, intron 1 of 31)	4307.0	NM_001003908	67300.0	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	46.34	54.37	31.45	62.07	42.45	49.83	62.31	75.61	28.73
Merged-chr9-108338165-1	chr9	108337665	108338665	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001329528)	promoter-TSS (NM_001329528)	-915.0	NM_001329528	14775.0	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	35.47	33.18	53.65	43.18	31.26	67.52	46.47	50.41	54.33
Merged-chr2-166714837-1	chr2	166714337	166715337	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1005.0	NM_177782	277360.0	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	45.76	37.78	18.5	36.43	31.72	20.09	46.47	49.08	29.98
Merged-chr15-59005233-1	chr15	59004733	59005733	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_144800, intron 3 of 14)	intron (NM_144800, intron 3 of 14)	71423.0	NM_023172	66218.0	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	13.73	8.29	0.92	14.84	11.2	20.09	13.73	3.1	6.25
Merged-chr11-74526684-1	chr11	74526184	74527184	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	63474.0	NM_001015046	380711.0	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	2.29	3.23	5.55	4.05	2.8	5.63	7.39	2.65	0.0
Merged-chr1-46852444-1	chr1	46851944	46852944	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356416, intron 1 of 10)	intron (NM_001356416, intron 1 of 10)	1174.0	NM_001356416	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	118.42	108.75	86.95	130.22	95.63	67.52	68.65	84.45	64.33
Merged-chr13-24965734-1	chr13	24965234	24966234	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008156, intron 11 of 25)	ERVB7_2-LTR_MM|LTR|ERVK	22582.0	NM_008156	14756.0	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	4.0	3.69	9.25	13.49	6.06	1.61	5.28	1.33	1.25
Merged-chr17-73005266-1	chr17	73004766	73005766	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	86961.0	NM_029999	77889.0	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	2.29	3.69	5.55	4.05	9.33	3.22	3.17	6.63	2.5
Merged-chr18-36384865-1	chr18	36384365	36385365	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001081365, intron 2 of 2)	intron (NM_001081365, intron 2 of 2)	36241.0	NM_001081365	66060.0	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	8.58	4.61	3.7	4.05	3.27	1.61	5.28	5.31	2.5
Merged-chr2-161041418-1	chr2	161040918	161041918	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_126509, intron 4 of 35)	intron (NR_126509, intron 4 of 35)	67668.0	NM_173368	71389.0	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	29.75	47.0	44.4	37.11	35.92	32.96	40.14	49.52	24.98
Merged-chrX-94648728-1	chrX	94648228	94649228	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER21B|LTR|ERV1	12659.0	NM_008179	14853.0	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	6.29	0.46	1.85	0.0	2.33	0.0	1.06	0.44	0.0
Merged-chr12-111326274-1	chr12	111325774	111326774	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183016, intron 7 of 36)	intron (NM_183016, intron 7 of 36)	51444.0	NM_183016	217866.0	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	4.0	5.53	4.62	10.8	0.93	9.65	2.11	3.98	3.75
Merged-chr4-124228742-1	chr4	124228242	124229242	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	257217.0	NR_040774	78460.0	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	2.29	3.23	5.55	3.37	2.33	1.61	2.11	3.1	2.5
Merged-chr1-7204923-1	chr1	7204423	7205423	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MERVL_2A-int|LTR|ERVL	116003.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	6.29	6.91	0.0	0.67	1.87	0.0	2.11	3.54	1.87
Merged-chr13-23401116-1	chr13	23400616	23401616	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	tRNA-Val-GTY|tRNA|tRNA	22750.0	NM_013924	30946.0	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	3.43	13.82	4.62	6.07	8.86	5.63	6.34	0.44	3.75
Merged-chr16-52451979-1	chr16	52451479	52452479	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	1102.0	NM_009655	11658.0	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	8.01	0.92	0.0	3.37	4.2	0.8	3.17	1.77	3.75
Merged-chr16-36936932-1	chr16	36936432	36937432	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_008225, intron 1 of 13)	intron (NM_008225, intron 1 of 13)	1949.0	NM_008225	15163.0	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	120.13	140.54	66.6	87.04	89.1	94.85	143.64	135.3	82.44
Merged-chr8-36937740-1	chr8	36937240	36938240	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001194940, exon 2 of 18)	exon (NM_001194940, exon 2 of 18)	14702.0	NM_001194940	50768.0	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	8.58	10.6	5.55	10.8	7.93	11.25	7.39	0.88	6.25
Merged-chr2-69676892-1	chr2	69676392	69677392	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001081087, intron 3 of 5)	B2_Mm2|SINE|B2	6772.0	NM_001081087	228003.0	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.57	1.84	0.0	2.02	4.2	0.0	2.11	3.1	1.25
Merged-chr12-87444582-1	chr12	87444082	87445082	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001013372)	promoter-TSS (NM_001013372)	-565.0	NM_001013372	654309.0	Mm.442579	NM_001013372	ENSMUSG00000079036	Nrp	-	neural regeneration protein	protein-coding	76.66	70.5	34.22	62.75	50.38	45.82	73.93	73.4	23.73
Merged-chr3-103019512-1	chr3	103019012	103020012	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F2|SINE|Alu	-1034.0	NM_001310693	229663.0	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	70.93	110.13	62.9	93.11	74.17	67.52	102.45	131.77	54.96
Merged-chr2-144338310-1	chr2	144337810	144338810	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-6230.0	NM_026924	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	23.45	17.05	12.95	19.57	10.73	20.9	12.67	11.5	10.62
Merged-chr7-88252790-1	chr7	88252290	88253290	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-25295.0	NM_009982	13032.0	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	27.46	38.71	49.95	29.01	23.33	40.19	31.69	33.16	51.21
Merged-chr7-4789560-1	chr7	4789060	4790060	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_029384)	promoter-TSS (NM_029384)	0.0	NM_029384	664968.0	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	16.02	12.9	16.65	24.29	12.6	6.43	19.01	8.84	3.12
Merged-chr2-166026146-1	chr2	166025646	166026646	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008679, intron 1 of 22)	MTE2a|LTR|ERVL-MaLR	33509.0	NM_008679	17979.0	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	46.91	40.55	37.92	37.11	27.06	58.68	36.97	36.7	33.72
Merged-chrX-106144064-1	chrX	106143564	106144564	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_205820, intron 1 of 2)	intron (NM_205820, intron 1 of 2)	789.0	NM_205820	279572.0	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	51.48	77.41	67.52	65.45	70.44	63.5	79.21	69.86	41.22
Merged-chr2-163727582-1	chr2	163727082	163728082	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_007398, exon 11 of 12)	exon (NM_007398, exon 11 of 12)	22657.0	NM_007398	11486.0	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	6.29	6.45	5.55	7.42	4.67	6.43	0.0	2.65	3.75
Merged-chr8-64880836-1	chr8	64880336	64881336	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-30912.0	NM_178633	77113.0	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|8530402H02Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	4.0	4.15	9.25	6.07	4.67	3.22	5.28	2.21	5.0
Merged-chr4-148903132-1	chr4	148902632	148903632	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027195, intron 4 of 15)	intron (NM_027195, intron 4 of 15)	49190.0	NR_154553	108168987.0	Mm.393596	NR_154553		Gm13205	AA408865	predicted gene 13205	ncRNA	4.0	2.3	3.7	0.67	1.87	0.0	1.06	0.44	1.87
Merged-chr3-152191256-1	chr3	152190756	152191756	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356364, intron 1 of 2)	tRNA-Ala-GCY_|tRNA|tRNA	2589.0	NM_025926	67035.0	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	8.58	13.36	1.85	15.52	2.8	1.61	5.28	3.54	1.25
Merged-chr10-59335078-1	chr10	59334578	59335578	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316370, intron 1 of 13)	intron (NM_001316370, intron 1 of 13)	11782.0	NM_001316370	18451.0	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	24.6	27.65	22.2	23.62	28.46	36.17	38.02	36.7	23.11
Merged-chr2-90744489-1	chr2	90743989	90744989	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-881.0	NM_018828	55935.0	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	102.4	82.94	74.92	112.68	97.97	66.71	111.96	136.19	64.33
Merged-chr12-35293870-1	chr12	35293370	35294370	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-98973.0	NR_030449	751520.0		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	39.47	50.23	29.6	45.21	40.12	40.99	16.9	28.3	38.72
Merged-chr1-138253116-1	chr1	138252616	138253616	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-20622.0	NM_177397	338375.0	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	13.73	18.43	18.5	15.52	14.0	21.7	12.67	13.27	22.48
Merged-chr6-145822339-1	chr6	145821839	145822839	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	13956.0	NM_027760	71323.0	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	2.29	4.61	5.55	6.75	1.4	0.0	2.11	0.88	2.5
Merged-chr14-70859031-1	chr14	70858531	70859531	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045939, intron 2 of 3)	MTD|LTR|ERVL-MaLR	6098.0	NR_045939	73648.0	Mm.410851	NR_045939	ENSMUSG00000099528	2410012E07Rik	-	RIKEN cDNA 2410012E07 gene	ncRNA	5.72	14.28	22.2	10.8	8.86	20.09	2.11	5.75	1.87
Merged-chr7-41599768-1	chr7	41599268	41600268	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-33763.0	NM_001360675	67607.0	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	21.17	29.95	17.57	25.64	27.99	23.31	25.35	30.51	12.49
Merged-chr10-61980656-1	chr10	61980156	61981156	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1548.0	NM_007731	12817.0	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	4.58	1.84	0.0	1.35	0.47	0.0	2.11	0.44	2.5
Merged-chr11-45649453-1	chr11	45648953	45649953	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-158630.0	NR_045876	100009664.0	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	6.29	6.91	3.7	10.8	3.27	3.22	0.0	3.1	7.49
Merged-chr17-29035259-1	chr17	29034759	29035759	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036613, intron 1 of 6)	B4|SINE|B4	2599.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	22.88	21.66	25.9	21.59	13.06	31.35	21.12	18.13	16.24
Merged-chr11-74840213-1	chr11	74839713	74840713	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010813, intron 4 of 5)	intron (NM_010813, intron 4 of 5)	9289.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	54.35	26.26	14.8	38.46	9.8	17.68	25.35	12.82	20.61
Merged-chr2-160700470-1	chr2	160699970	160700970	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009408, intron 9 of 20)	intron (NM_009408, intron 9 of 20)	-30840.0	NM_021280	18803.0	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	16.59	7.37	13.87	16.87	12.13	11.25	11.62	3.54	11.24
Merged-chr1-134098113-1	chr1	134097613	134098613	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13129.0	NM_001284525	71884.0	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	67.5	76.49	59.2	90.41	76.97	77.16	69.71	93.74	58.08
Merged-chr14-103650165-1	chr14	103649665	103650665	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001361639)	promoter-TSS (NM_001361639)	-63.0	NM_198014	105439.0	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.57	1.38	9.25	1.35	0.47	2.41	2.11	0.44	1.25
Merged-chr13-46984085-1	chr13	46983585	46984585	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1C1|LTR|ERVL-MaLR	30765.0	NM_175340	105193.0	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	4.0	7.83	1.85	6.07	1.87	3.22	4.22	6.19	2.5
Merged-chr19-37543728-1	chr19	37543228	37544228	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	-6690.0	NM_175353	107371.0	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	17.73	13.82	11.1	23.62	13.06	12.06	19.01	21.22	3.75
Merged-chr11-83608234-1	chr11	83607734	83608734	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036453, intron 2 of 8)	intron (NR_036453, intron 2 of 8)	-15147.0	NM_009139	20305.0	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	16.59	12.44	23.12	21.59	23.79	38.58	30.63	14.59	21.23
Merged-chr5-125177137-1	chr5	125176637	125177637	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253905, intron 1 of 42)	intron (NM_001253905, intron 1 of 42)	2077.0	NM_001253905	20602.0	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	14.87	10.6	36.07	22.27	19.13	36.17	21.12	10.17	18.74
Merged-chr11-114983314-1	chr11	114982814	114983814	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_145437, exon 4 of 4)	3' UTR (NM_145437, exon 4 of 4)	6572.0	NM_145437	217305.0	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	2.86	4.61	0.0	36.43	31.26	70.73	7.39	4.86	11.87
Merged-chr5-20955480-1	chr5	20954980	20955980	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_030699, exon 1 of 1)	non-coding (NR_030699, exon 1 of 1)	-3658.0	NM_001080977	242860.0	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	16.02	11.98	11.1	14.84	9.33	6.43	12.67	11.94	10.62
Merged-chr7-111429611-1	chr7	111429111	111430111	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-306936.0	NR_015573	75479.0	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	5.15	0.92	3.7	7.42	2.33	6.43	3.17	6.19	7.49
Merged-chr9-119981047-1	chr9	119980547	119981547	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_153287, intron 1 of 4)	intron (NM_153287, intron 1 of 4)	1976.0	NM_001357560	215418.0	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	25.17	15.21	26.82	14.84	12.13	20.9	36.97	26.97	16.24
Merged-chr1-5018897-1	chr1	5018397	5019397	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	-163.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	3.43	2.3	3.7	2.7	3.27	1.61	5.28	0.0	5.0
Merged-chr11-59810873-1	chr11	59810373	59811373	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001271356)	promoter-TSS (NM_001271356)	793.0	NR_045686	100504104.0	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	-	predicted gene 16062	ncRNA	18.88	21.66	30.52	56.68	48.52	77.97	58.09	57.04	50.59
Merged-chr8-10026404-1	chr8	10025904	10026904	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_033622, intron 4 of 6)	L1M4|LINE|L1	19771.0	NM_033622	24099.0	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	1.14	3.69	3.7	4.72	5.13	2.41	7.39	3.54	5.62
Merged-chr2-36265493-1	chr2	36264993	36265993	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	35067.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	8.58	7.37	1.85	4.05	3.27	3.22	6.34	4.42	2.5
Merged-chr13-49097787-1	chr13	49097287	49098287	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290313, intron 4 of 29)	intron (NM_001290313, intron 4 of 29)	50541.0	NM_029361	75607.0	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	10.87	4.61	5.55	6.07	2.8	1.61	2.11	4.86	3.12
Merged-chr13-45945651-1	chr13	45945151	45946151	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	19340.0	NM_001199304	20238.0	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|Gm10786|Sca1	ataxin 1	protein-coding	6.86	5.99	1.85	3.37	6.06	4.02	8.45	2.65	3.75
Merged-chr3-84648268-1	chr3	84647768	84648768	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-17924.0	NM_177260	320782.0	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	8.58	12.44	7.4	17.54	18.19	15.27	35.91	34.05	14.99
Merged-chr7-24546710-1	chr7	24546210	24547210	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001037143)	promoter-TSS (NM_001037143)	11.0	NM_001360170	22594.0	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	58.92	73.26	70.3	64.1	74.64	53.05	69.71	46.43	29.98
Merged-chr8-34530228-1	chr8	34529728	34530728	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110088.0	NR_040706	330734.0	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	3.43	2.76	1.85	0.67	3.73	0.0	4.22	3.54	1.87
Merged-chr13-54685323-1	chr13	54684823	54685823	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_027396, intron 1 of 10)	intron (NR_027396, intron 1 of 10)	2485.0	NM_001146025	105239.0	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	2.86	3.69	1.85	7.42	0.93	10.45	9.51	3.1	5.0
Merged-chr8-124241116-1	chr8	124240616	124241616	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139272, intron 1 of 15)	intron (NM_139272, intron 1 of 15)	9722.0	NM_139272	108148.0	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	17.16	26.73	16.65	12.82	14.46	18.49	25.35	16.36	31.23
Merged-chr4-101355564-1	chr4	101355064	101356064	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	684.0	NR_040708	77866.0	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	263.14	236.38	171.12	226.03	212.26	155.93	205.96	225.95	139.89
Merged-chr5-92442414-1	chr5	92441914	92442914	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_007644, exon 12 of 12)	3' UTR (NM_007644, exon 12 of 12)	-7215.0	NM_183392	269113.0	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	62.93	79.25	37.92	64.1	44.78	64.3	92.94	106.56	44.97
Merged-chr9-35110016-1	chr9	35109516	35110516	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009178, intron 1 of 10)	intron (NM_009178, intron 1 of 10)	-6712.0	NR_029475	78934.0	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	15.45	15.67	26.82	9.45	2.33	16.88	17.96	8.84	7.49
Merged-chr12-31947697-1	chr12	31947197	31948197	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177993, intron 1 of 8)	B3|SINE|B2	2548.0	NM_177993	73389.0	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	11.44	10.6	11.1	9.45	4.2	8.04	9.51	11.5	5.62
Merged-chr7-121089806-1	chr7	121089306	121090306	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_139310, intron 1 of 28)	intron (NM_139310, intron 1 of 28)	6368.0	NM_139310	246190.0	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	2.29	3.69	8.32	0.67	0.93	1.61	3.17	4.42	2.5
Merged-chr3-96475101-1	chr3	96474601	96475601	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-22795.0	NM_001256181	329716.0	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	4.0	0.92	3.7	5.4	1.87	0.0	7.39	0.44	1.25
Merged-chr8-68362418-1	chr8	68361918	68362918	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172753, intron 8 of 9)	intron (NM_172753, intron 8 of 9)	-6041.0	NR_038189	73609.0	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	3.43	3.23	0.0	5.4	1.4	4.02	4.22	0.44	0.0
Merged-chrX-56597386-1	chrX	56596886	56597886	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_146234, intron 1 of 3)	intron (NM_146234, intron 1 of 3)	533.0	NM_146234	236792.0	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	32.61	52.07	37.0	14.84	38.25	73.14	42.25	44.22	24.36
Merged-chr4-75318319-1	chr4	75317819	75318819	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-40027.0	NM_025849	66928.0	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	3.43	3.69	3.7	10.12	2.33	17.68	9.51	6.19	6.25
Merged-chr18-61014692-1	chr18	61014192	61015192	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_201353)	promoter-TSS (NM_201353)	-493.0	NM_201353	240332.0	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.57	0.46	3.7	0.67	3.27	0.0	0.0	0.44	1.87
Merged-chr18-82916480-1	chr18	82915980	82916980	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001177464, intron 1 of 5)	intron (NM_001177464, intron 1 of 5)	1848.0	NM_001177464	329003.0	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	24.03	14.75	12.02	17.54	10.73	12.06	24.29	10.61	12.49
Merged-chr3-58411773-1	chr3	58411273	58412273	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2947.0	NM_001081229	72033.0	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	7.44	6.45	7.4	2.02	6.06	9.65	7.39	3.54	4.37
Merged-chr2-53001344-1	chr2	53000844	53001844	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MER119|DNA|hAT-Charlie	143476.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	8.01	5.99	3.7	6.75	5.13	8.04	13.73	5.31	3.75
Merged-chr17-65728211-1	chr17	65727711	65728711	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133685, intron 1 of 6)	intron (NM_133685, intron 1 of 6)	44541.0	NM_133685	106572.0	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	18.88	36.86	26.82	18.89	18.19	23.31	46.47	34.05	24.36
Merged-chr8-71610210-1	chr8	71609710	71610710	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_146211)	promoter-TSS (NM_146211)	-814.0	NM_146211	234407.0	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	86.38	58.98	49.02	132.24	113.83	112.53	76.05	92.86	58.08
Merged-chr2-30705668-1	chr2	30705168	30706168	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15542.0	NR_037272	100526499.0		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	8.01	7.37	9.25	5.4	6.06	16.08	8.45	2.65	7.49
Merged-chr4-88475258-1	chr4	88474758	88475758	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA4|LINE|L1	-36332.0	NM_025760	66775.0	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	1.14	4.15	0.0	6.07	3.73	1.61	3.17	2.65	2.5
Merged-chr18-67776102-1	chr18	67775602	67776602	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_045376)	TTS (NR_045376)	1226.0	NM_028112	72124.0	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	23.45	34.1	29.6	29.01	28.46	31.35	27.46	15.92	14.99
Merged-chr10-60730477-1	chr10	60729977	60730977	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023596, intron 3 of 5)	intron (NM_023596, intron 3 of 5)	22305.0	NM_023596	71279.0	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	12.59	7.83	15.72	10.8	11.2	6.43	11.62	5.75	7.49
Merged-chr2-165900346-1	chr2	165899846	165900846	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-15508.0	NM_001252587	228880.0	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	38.9	26.26	51.8	34.41	25.19	46.62	74.99	59.25	39.97
Merged-chr13-5800047-1	chr13	5799547	5800547	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	58045.0	NR_045891	71867.0	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	14.3	12.44	7.4	6.75	6.06	1.61	5.28	3.1	6.87
Merged-chr2-31768784-1	chr2	31768284	31769284	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001283045, intron 1 of 10)	intron (NM_001283045, intron 1 of 10)	8611.0	NM_001283045	11350.0	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	131.0	174.64	107.29	114.03	109.16	122.18	85.55	127.34	72.45
Merged-chr1-155533653-1	chr1	155533153	155534153	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-6542.0	NR_132128	433367.0	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	2.29	2.76	1.85	2.02	2.8	2.41	5.28	6.63	4.37
Merged-chr12-26414848-2	chr12	26414345	26415345	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_105856)	TTS (NR_105856)	165.0	NR_105856	102466676.0		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	16.02	10.6	9.25	22.94	15.39	12.86	10.56	1.33	3.75
Merged-chr10-7391222-1	chr10	7390722	7391722	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	82255.0	NM_029975	77777.0	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	2.29	1.84	0.0	3.37	1.4	4.82	3.17	2.21	2.5
Merged-chr19-5448820-1	chr19	5448320	5449320	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010235, intron 1 of 3)	CpG	1122.0	NM_010235	14283.0	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	5.15	10.14	0.0	1.35	2.8	0.0	3.17	1.33	6.87
Merged-chr5-90908398-1	chr5	90907898	90908898	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RSINE1|SINE|B4	4499.0	NM_009140	20310.0	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	6.86	10.6	2.77	6.07	12.13	6.43	4.22	4.42	0.0
Merged-chr1-7099093-1	chr1	7098593	7099593	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	10173.0	NM_183028	319263.0	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	20.59	12.44	12.02	6.75	5.6	9.65	6.34	13.27	13.74
Merged-chr8-88757197-1	chr8	88756697	88757697	+	545.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	60169.0	NM_001128171	74256.0	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	2.86	0.0	5.55	1.35	0.93	2.41	4.22	0.88	5.0
Merged-chr13-19952435-2	chr13	19951941	19952941	+	545.0	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-128184.0	NM_181754	353346.0	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	5.72	2.76	1.85	2.02	4.67	1.61	1.06	3.1	8.12
Merged-chr2-52917017-1	chr2	52916517	52917517	+	545.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172409, intron 1 of 26)	MTC|LTR|ERVL-MaLR	59149.0	NM_172409	71409.0	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	6.86	2.76	5.55	3.37	4.67	4.82	5.28	6.63	1.25
Merged-chr17-17749577-1	chr17	17749077	17750077	+	544.5	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	45636.0	NM_001104539	626942.0	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	1.72	3.23	0.0	0.67	3.27	0.0	0.0	1.77	5.0
Merged-chr16-32276065-2	chr16	32275565	32276565	+	544.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1396.0	NM_027355	70238.0	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	42.9	37.78	37.92	29.69	20.06	29.74	36.97	31.39	19.98
Merged-chr12-34702736-1	chr12	34702236	34703236	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001271386, intron 3 of 27)	intron (NM_001271386, intron 3 of 27)	-173847.0	NM_024124	79221.0	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	26.31	23.04	12.02	22.27	20.06	36.17	20.07	7.07	17.49
Merged-chrX-167357569-1	chrX	167357069	167358069	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001313758, intron 4 of 6)	intron (NM_001313758, intron 4 of 6)	25180.0	NM_026662	110639.0	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	2.86	5.07	1.85	2.02	4.2	10.45	5.28	2.21	5.0
Merged-chr8-122923656-1	chr8	122923156	122924156	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	75282.0	NM_007662	12555.0	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	92.1	64.51	35.15	68.15	42.45	29.74	63.37	64.56	53.08
Merged-chr16-58702486-1	chr16	58701986	58702986	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16238.0	NM_001162955	71223.0	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	4.0	2.3	3.7	2.02	2.33	5.63	2.11	3.54	3.75
Merged-chr10-61602516-1	chr10	61602016	61603016	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177511, intron 1 of 3)	intron (NM_001177511, intron 1 of 3)	7032.0	NM_001177511	237362.0	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	3.43	0.46	0.0	4.72	0.93	3.22	1.06	0.0	2.5
Merged-chr13-98955796-1	chr13	98955296	98956296	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RMER10A|LTR|ERVL	28769.0	NM_027064	69382.0	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	80.09	52.99	56.42	89.06	63.91	73.95	133.08	156.09	68.7
Merged-chr10-63021724-1	chr10	63021224	63022224	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001079824, intron 1 of 9)	intron (NM_001079824, intron 1 of 9)	-1424.0	NM_001359260	432467.0	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	11.44	8.29	3.7	8.1	7.0	8.04	10.56	5.31	10.62
Merged-chr16-23855418-1	chr16	23854918	23855918	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	35426.0	NM_009215	20604.0	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	1.72	0.92	0.0	2.02	1.4	3.22	1.06	1.33	0.0
Merged-chr9-78499303-1	chr9	78498803	78499803	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-17579.0	NM_010106	13627.0	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	12.01	11.52	11.1	13.49	9.33	11.25	10.56	14.59	8.74
Merged-chrX-167318413-1	chrX	167317913	167318913	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290758, intron 2 of 3)	MLT1J|LTR|ERVL-MaLR	12158.0	NM_001290757	170743.0	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	34.9	37.78	42.55	32.39	44.78	40.99	36.97	34.93	26.23
Merged-chr16-81434419-1	chr16	81433919	81434919	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113208, intron 2 of 17)	intron (NM_001113208, intron 2 of 17)	233722.0	NM_010954	17968.0	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	10.87	9.22	19.42	9.45	5.6	6.43	15.84	7.96	9.99
Merged-chr11-115354417-1	chr11	115353917	115354917	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001346774, exon 12 of 19)	exon (NM_001346774, exon 12 of 19)	13302.0	NM_175454	217310.0	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	10.87	0.46	0.0	4.05	0.47	2.41	2.11	1.33	0.0
Merged-chrX-17467003-1	chrX	17466503	17467503	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	105004.0	NM_001313746	72018.0	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	4.0	2.3	0.0	0.67	3.27	1.61	2.11	3.54	0.0
Merged-chr11-78828528-1	chr11	78828028	78829028	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001076681, intron 1 of 3)	ID_B1|SINE|B4	1933.0	NM_001076681	66274.0	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	2.29	4.15	9.25	3.37	4.2	4.82	2.11	0.44	3.75
Merged-chr11-104352315-1	chr11	104351815	104352815	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001359634, intron 7 of 14)	ID4_|SINE|ID	89976.0	NM_001081045	76719.0	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	7.44	9.68	11.1	14.17	6.53	4.82	10.56	7.52	6.25
Merged-chr6-29244073-1	chr6	29243573	29244573	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27709.0	NM_001302934	23917.0	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	11.44	5.99	3.7	7.42	3.73	4.82	9.51	1.33	8.12
Merged-chr16-17760839-1	chr16	17760339	17761339	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145479, intron 1 of 6)	intron (NM_145479, intron 1 of 6)	1218.0	NM_001359068	224023.0	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	5.15	5.07	8.32	7.42	3.73	3.22	2.11	3.1	0.0
Merged-chr17-6316964-1	chr17	6316464	6317464	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001166629, intron 1 of 4)	CpG	510.0	NM_001166629	100310872.0	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	105.83	155.75	68.45	69.5	90.97	81.99	128.85	173.77	106.79
Merged-chr9-62040346-1	chr9	62039846	62040846	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-13556.0	NM_028748	74090.0	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	3.43	4.61	0.0	1.35	4.2	3.22	5.28	1.33	2.5
Merged-chr15-79514135-1	chr15	79513635	79514635	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2273.0	NM_134090	105785.0	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	1.14	0.0	3.7	2.7	0.47	1.61	2.11	6.19	1.25
Merged-chr3-103335539-1	chr3	103335039	103336039	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001079830, intron 11 of 18)	intron (NM_001079830, intron 11 of 18)	56246.0	NM_053170	94093.0	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	6.86	7.83	9.25	12.14	7.93	3.22	14.79	7.52	5.0
Merged-chr18-67203007-1	chr18	67202507	67203507	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177137, intron 5 of 11)	intron (NM_177137, intron 5 of 11)	-2352.0	NM_024190	67064.0	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	8.58	10.14	13.87	8.1	8.86	1.61	3.17	0.0	6.25
Merged-chr7-55967585-1	chr7	55967085	55968085	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_015495, intron 1 of 5)	intron (NR_015495, intron 1 of 5)	5054.0	NR_015495	320845.0	Mm.274484	NM_001033396		A230056P14Rik	-	RIKEN cDNA A230056P14 gene	ncRNA	13.73	16.13	14.8	15.52	8.86	21.7	7.39	17.24	10.62
Merged-chr11-95687358-1	chr11	95686858	95687858	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	20401.0	NM_008831	18673.0	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	27.46	34.1	40.7	24.29	23.33	21.7	16.9	33.6	31.23
Merged-chr15-99224602-1	chr15	99224102	99225102	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_010601)	promoter-TSS (NM_010601)	-374.0	NM_010601	16512.0	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	7.44	1.84	0.0	7.42	5.13	0.0	9.51	2.65	2.5
Merged-chr1-54846512-1	chr1	54846012	54847012	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	79875.0	NM_001081433	329154.0	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.29	1.84	3.7	5.4	3.73	3.22	3.17	1.33	7.49
Merged-chr6-114655453-1	chr6	114654953	114655953	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001253718, intron 2 of 19)	intron (NM_001253718, intron 2 of 19)	12356.0	NM_001253718	74244.0	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.0	7.83	7.4	6.75	3.27	18.49	2.11	3.98	7.49
Merged-chr10-19005434-1	chr10	19004934	19005934	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001166402, intron 5 of 7)	intron (NM_001166402, intron 5 of 7)	6529.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	4.0	2.76	7.4	1.35	3.27	1.61	5.28	1.33	10.62
Merged-chr10-70035865-1	chr10	70035365	70036365	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-61256.0	NM_001111121	76551.0	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.57	3.23	9.25	3.37	4.2	12.06	15.84	20.78	19.36
Merged-chr19-3753961-1	chr19	3753461	3754461	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1E|LTR|ERVL-MaLR	-13460.0	NM_001167889	225888.0	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	2.29	3.23	3.7	5.4	3.73	6.43	1.06	3.1	8.74
Merged-chr2-29252340-1	chr2	29251840	29252840	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_029460, intron 1 of 1)	CpG	653.0	NR_029460	76220.0	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	4.0	2.76	1.85	8.1	7.0	3.22	6.34	4.42	0.0
Merged-chr17-29486090-1	chr17	29485590	29486590	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-4955.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	15.45	7.37	29.6	14.17	8.86	7.23	9.51	7.52	11.24
Merged-chr4-130264951-1	chr4	130264451	130265451	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356465, intron 2 of 9)	intron (NM_001356465, intron 2 of 9)	6483.0	NM_001356465	230779.0	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	3.43	1.84	1.85	1.35	0.47	0.0	1.06	0.88	0.0
Merged-chr6-122591576-1	chr6	122591076	122592076	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_031159, intron 3 of 7)	intron (NM_031159, intron 3 of 7)	10868.0	NM_031159	11810.0	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	12.59	15.21	33.3	8.77	15.86	33.76	30.63	28.3	33.72
Merged-chr3-21916110-1	chr3	21915610	21916610	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-160542.0	NM_030732	81004.0	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.01	5.99	12.95	4.05	7.0	1.61	3.17	3.54	5.62
Merged-chr13-119614007-1	chr13	119613507	119614507	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9812.0	NM_020279	56838.0	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	8.58	6.91	8.32	28.34	19.59	20.09	10.56	11.05	11.24
Merged-chr5-99219942-1	chr5	99219442	99220442	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181318, intron 13 of 13)	PB1D10|SINE|Alu	32985.0	NM_181318	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	17.73	29.95	18.5	22.27	11.66	30.54	22.18	19.9	11.87
Merged-chr17-27957138-1	chr17	27956638	27957638	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	47832.0	NM_181413	224650.0	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	22.88	18.43	31.45	22.94	18.19	24.11	10.56	6.63	11.87
Merged-chr18-80470998-1	chr18	80470498	80471498	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-1331.0	NM_026295	67655.0	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	45.76	31.79	26.82	30.36	27.99	31.35	29.57	30.51	27.48
Merged-chr5-136138080-1	chr5	136137580	136138580	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028070)	promoter-TSS (NM_028070)	-701.0	NM_028070	72041.0	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	5.72	4.61	1.85	2.7	1.87	1.61	12.67	2.21	1.25
Merged-chr7-81318994-2	chr7	81318462	81319462	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008803, intron 14 of 21)	intron (NM_008803, intron 14 of 21)	26272.0	NM_009092	20068.0	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	8.58	1.38	5.55	4.72	4.2	6.43	6.34	1.33	3.75
Merged-chr6-8420818-1	chr6	8420318	8421318	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88343.0	NR_040452	320312.0	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	5.15	2.76	9.25	13.49	16.79	16.88	6.34	7.07	5.0
Merged-chr8-83166450-1	chr8	83165950	83166950	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001111304, intron 1 of 20)	intron (NM_001111304, intron 1 of 20)	1098.0	NM_027758	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	236.26	220.25	178.52	240.2	215.53	157.54	271.44	231.25	140.52
Merged-chr7-99607802-1	chr7	99607302	99608302	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	19301.0	NM_001195529	100503386.0	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	1.14	1.84	0.0	7.42	0.47	0.0	1.06	2.21	1.25
Merged-chr7-126894951-1	chr7	126894451	126895451	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_026827, intron 3 of 5)	L2c|LINE|L2	3327.0	NM_026827	68742.0	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	12.01	13.82	13.87	12.14	9.33	18.49	15.84	18.13	17.49
Merged-chr10-5806999-1	chr10	5806499	5807499	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1534.0	NM_025995	67141.0	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	50.34	46.54	40.7	58.7	36.85	40.99	47.53	34.93	41.84
Merged-chr8-46850314-1	chr8	46849814	46850814	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	110569.0	NR_152560	16363.0	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	60.64	104.14	109.14	57.35	62.51	83.59	68.65	114.08	51.84
Merged-chr17-35666301-1	chr17	35665801	35666801	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175137, intron 3 of 28)	intron (NM_175137, intron 3 of 28)	1291.0	NM_175137	68915.0	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	6.86	2.76	1.85	6.75	2.8	1.61	4.22	2.65	8.74
Merged-chr9-113795485-1	chr9	113794985	113795985	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001286603, intron 1 of 4)	intron (NM_001286603, intron 1 of 4)	2155.0	NM_001286603	76499.0	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	17.73	18.43	12.95	25.64	14.46	6.43	15.84	7.96	6.87
Merged-chr7-98165031-1	chr7	98164531	98165531	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_007602, intron 1 of 12)	B3|SINE|B2	-2689.0	NM_001301250	12337.0	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	11.44	8.29	24.05	8.1	5.13	12.06	10.56	7.96	4.37
Merged-chr10-112270406-1	chr10	112269906	112270906	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001359752)	promoter-TSS (NM_001359752)	-715.0	NM_001359752	268345.0	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	1.14	0.92	0.0	4.72	1.4	2.41	1.06	1.77	0.0
Merged-chr17-17845406-1	chr17	17844906	17845906	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008215, intron 4 of 4)	B3|SINE|B2	9782.0	NM_008215	15116.0	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase 1	protein-coding	5.15	4.15	1.85	2.7	0.93	1.61	8.45	0.0	4.37
Merged-chr13-91361698-1	chr13	91361198	91362198	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	26387.0	NR_045161	320297.0	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	7.44	5.07	3.7	6.07	5.13	11.25	3.17	1.33	2.5
Merged-chr19-43695866-1	chr19	43695366	43696366	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_053103, intron 3 of 12)	L2c|LINE|L2	6177.0	NM_053103	93685.0	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	15.45	5.53	11.1	8.77	3.73	11.25	10.56	6.63	5.0
Merged-chr3-96105514-1	chr3	96105014	96106014	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025614, intron 1 of 11)	intron (NM_001025614, intron 1 of 11)	987.0	NM_001025614	229603.0	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	16.02	10.6	11.1	12.82	9.8	12.06	8.45	15.48	8.74
Merged-chr19-57483034-1	chr19	57482534	57483534	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029839, intron 4 of 6)	intron (NM_029839, intron 4 of 6)	-25530.0	NR_040306	78073.0	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA	1.14	0.0	3.7	5.4	2.33	0.0	1.06	1.77	3.75
Merged-chr19-25027958-1	chr19	25027458	25028458	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_028785, intron 1 of 47)	ORR1E|LTR|ERVL-MaLR	28429.0	NM_028785	76088.0	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	13.16	6.91	5.55	14.84	7.46	20.09	2.11	5.75	3.75
Merged-chr16-58503075-1	chr16	58502575	58503575	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357433, intron 2 of 10)	L1ME1|LINE|L1	20351.0	NM_018784	54613.0	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	60.64	77.41	54.57	77.59	50.85	65.11	83.44	103.47	68.7
Merged-chr1-133177576-1	chr1	133177076	133178076	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	46410.0	NM_133819	108954.0	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	2.86	0.46	1.85	1.35	2.33	0.0	2.11	0.88	1.25
Merged-chr5-92375996-1	chr5	92375496	92376496	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310664, intron 2 of 10)	intron (NM_001310664, intron 2 of 10)	-12138.0	NM_181728	109979.0	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	140.73	96.76	78.62	105.93	75.57	62.7	127.8	114.52	80.56
Merged-chr7-35029696-1	chr7	35029196	35030196	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26870.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	48.05	53.91	44.4	80.97	90.04	76.36	88.72	88.43	58.08
Merged-chr6-31471546-1	chr6	31471046	31472046	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013791, intron 10 of 17)	ORR1F|LTR|ERVL-MaLR	72718.0	NM_013791	27418.0	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	6.86	5.07	17.57	4.05	5.6	3.22	7.39	1.77	3.75
Merged-chr5-140756853-1	chr5	140756353	140757353	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	32726.0	NM_173405	231842.0	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	5.15	2.76	7.4	9.45	4.2	7.23	1.06	0.44	3.12
Merged-chr18-24047648-1	chr18	24047148	24048148	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26835.0	NM_021559	59057.0	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	1.72	1.38	3.7	2.02	1.4	3.22	2.11	0.88	5.0
Merged-chr19-6292916-1	chr19	6292416	6293416	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_010119, intron 2 of 4)	RSINE1|SINE|B4	-13541.0	NM_001033342	240505.0	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	167.61	155.28	104.52	156.53	118.96	167.99	121.46	155.64	108.67
Merged-chr13-113306495-1	chr13	113305995	113306995	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	96836.0	NM_023612	71690.0	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	10.3	6.45	3.7	2.7	2.8	1.61	0.0	9.29	3.75
Merged-chr1-46890680-1	chr1	46890180	46891180	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001356417, intron 2 of 10)	B1_Mur1|SINE|Alu	35096.0	NM_001356417	227059.0	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	4.58	6.91	5.55	4.05	2.33	3.22	6.34	3.54	2.5
Merged-chr5-76118577-1	chr5	76118077	76119077	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-21696.0	NM_020611	57357.0	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	2.29	3.69	0.0	2.02	2.33	2.41	1.06	1.33	1.25
Merged-chr11-61457102-1	chr11	61456602	61457602	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-3110.0	NM_001291024	22671.0	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	1.72	4.15	6.47	4.72	7.46	11.25	6.34	1.77	5.0
Merged-chr7-100537638-1	chr7	100537138	100538138	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_183270, intron 1 of 1)	intron (NM_183270, intron 1 of 1)	538.0	NM_183270	68185.0	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	101.25	69.12	52.72	146.41	126.89	96.45	100.34	94.18	35.6
Merged-chr13-34726370-1	chr13	34725870	34726870	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13272.0	NM_138746	108161.0	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	10.87	5.99	14.8	14.17	10.26	3.22	7.39	4.42	6.25
Merged-chr5-41857739-1	chr5	41857239	41858239	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13424.0	NM_001081422	665775.0	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	3.43	4.61	0.0	2.7	6.06	1.61	5.28	2.21	5.0
Merged-chr8-8225306-1	chr8	8224806	8225806	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	435467.0	NM_010111	13642.0	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	1.72	2.76	8.32	5.4	3.73	4.02	3.17	1.33	2.5
Merged-chr5-63971254-1	chr5	63970754	63971754	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2357.0	NM_145923	100532.0	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	42.9	45.16	38.85	39.13	45.25	43.4	43.3	58.37	48.09
Merged-chr3-89246964-1	chr3	89246464	89247464	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310625, intron 2 of 4)	intron (NM_001310625, intron 2 of 4)	491.0	NM_001310625	66059.0	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	56.06	56.68	22.2	49.93	31.72	32.15	46.47	32.72	24.36
Merged-chr16-75900380-1	chr16	75899880	75900880	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023380, intron 1 of 7)	intron (NM_023380, intron 1 of 7)	8886.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	8.01	11.98	7.4	7.42	6.53	9.65	14.79	4.86	6.25
Merged-chr6-97397807-1	chr6	97397307	97398307	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145148, intron 5 of 23)	URR1A|DNA|hAT-Charlie	61479.0	NM_001346639	232288.0	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	109.26	131.32	107.29	135.62	125.96	139.06	157.37	192.78	93.68
Merged-chr2-168112142-1	chr2	168111642	168112642	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	31138.0	NM_021409	58220.0	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	3.43	2.3	4.62	0.67	1.4	3.22	3.17	3.1	0.62
Merged-chr5-146784812-1	chr5	146784312	146785312	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011669, intron 1 of 8)	MLT1E2|LTR|ERVL-MaLR	10144.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	32.04	45.16	38.85	25.64	28.46	50.64	70.76	54.39	45.59
Merged-chr13-42394739-1	chr13	42394239	42395239	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	93263.0	NM_010104	13614.0	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.0	3.23	10.17	3.37	2.33	4.02	1.06	0.88	3.75
Merged-chr6-17282405-1	chr6	17281905	17282905	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001277756, exon 2 of 2)	3' UTR (NM_001277756, exon 2 of 2)	1220.0	NM_016900	12390.0	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	6.29	2.76	1.85	3.37	4.2	3.22	6.34	1.33	7.49
Merged-chr8-47670791-1	chr8	47670291	47671291	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023503, intron 1 of 1)	intron (NM_023503, intron 1 of 1)	4368.0	NM_023503	69260.0	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	10.3	12.9	7.4	7.42	16.33	18.49	10.56	22.11	15.61
Merged-chr4-117557411-1	chr4	117556911	117557911	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001356405, intron 2 of 8)	L2c|LINE|L2	7046.0	NM_080469	140546.0	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	4.58	13.82	8.32	4.72	7.46	4.82	3.17	7.07	5.0
Merged-chr6-89679578-1	chr6	89679078	89680078	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-34625.0	NM_053228	113855.0	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	1.14	1.84	1.85	0.67	3.73	0.0	2.11	1.33	2.5
Merged-chr5-86079462-1	chr5	86078962	86079962	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310639, intron 2 of 7)	intron (NM_001310639, intron 2 of 7)	7716.0	NM_001310639	56792.0	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	26.31	31.79	19.42	28.34	20.99	21.7	34.85	41.12	18.74
Merged-chr10-12968464-1	chr10	12967964	12968964	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR14|LTR|ERV1	-4205.0	NM_001163591	74732.0	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	2.86	5.07	5.55	2.02	2.33	12.86	8.45	3.54	13.74
Merged-chr19-34067238-1	chr19	34066738	34067738	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_027340)	promoter-TSS (NM_027340)	-120.0	NM_027340	70166.0	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	3.43	0.92	1.85	1.35	3.73	1.61	4.22	1.77	1.25
Merged-chr9-40636228-1	chr9	40635728	40636728	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-49736.0	NM_133733	71566.0	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	7.44	8.75	0.0	10.8	4.67	3.22	8.45	3.98	3.75
Merged-chr11-78095109-1	chr11	78094609	78095609	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	436.0	NM_145430	216971.0	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	50.34	35.48	51.8	49.93	40.12	31.35	50.7	45.1	38.72
Merged-chr16-23498847-1	chr16	23498347	23499347	+	544.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001359083, intron 2 of 10)	MIR3|SINE|MIR	21968.0	NM_008555	17174.0	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	10.87	15.21	38.85	15.52	16.79	17.68	17.96	21.67	21.23
Merged-chr11-72946549-2	chr11	72946059	72947059	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14610.0	NM_016745	53313.0	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	17.16	8.75	6.47	10.12	7.93	11.25	15.84	8.84	3.12
Merged-chr13-43725866-1	chr13	43725366	43726366	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	9075.0	NR_046022	622552.0	Mm.375036	NR_046022	ENSMUSG00000110016	Gm20751	-	predicted gene, 20751	ncRNA	2.86	1.84	1.85	6.07	0.47	3.22	2.11	3.1	2.5
Merged-chr8-120700243-1	chr8	120699743	120700743	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31923.0	NM_001293559	12857.0	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit 4I1	protein-coding	10.3	9.22	12.02	16.19	15.39	8.04	14.79	17.24	14.36
Merged-chr1-80772725-1	chr1	80772225	80773225	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1F2|LTR|ERVL-MaLR	-14172.0	NM_175291	210293.0	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	1.14	2.76	5.55	10.12	12.6	1.61	2.11	3.1	6.25
Merged-chr10-81288819-1	chr10	81288319	81289319	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001282095, intron 1 of 20)	intron (NM_001282095, intron 1 of 20)	2448.0	NM_013769	27375.0	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	4.0	1.84	2.77	4.05	2.8	4.82	3.17	1.33	0.62
Merged-chr5-92149451-1	chr5	92148951	92149951	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019490, intron 1 of 23)	intron (NM_019490, intron 1 of 23)	11513.0	NM_019490	56041.0	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	5.15	4.15	12.95	12.82	4.67	6.43	12.67	6.19	7.49
Merged-chrX-102017426-1	chrX	102016926	102017926	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001163610, intron 1 of 7)	intron (NM_001163610, intron 1 of 7)	53881.0	NM_001278534	331474.0	Mm.23297	NM_183318	ENSMUSG00000049191	Rtl5	6430402L03Rik|Mar5|Mart5|Rgag4|mKIAA2001	retrotransposon Gag like 5	protein-coding	4.58	2.3	3.7	7.42	1.4	4.82	9.51	3.1	2.5
Merged-chrX-37109736-1	chrX	37109236	37110236	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026573, intron 1 of 9)	intron (NM_026573, intron 1 of 9)	586.0	NM_026573	68134.0	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	49.77	52.99	66.6	47.9	52.25	42.6	63.37	58.81	54.96
Merged-chr11-31847845-1	chr11	31847345	31848345	+	544.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MER2|DNA|TcMar-Tigger	-23095.0	NM_001290676	67579.0	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	5.72	4.61	0.0	6.75	0.0	4.82	5.28	3.54	7.49
Merged-chr1-51580281-1	chr1	51579781	51580781	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151621, intron 3 of 3)	intron (NR_151621, intron 3 of 3)	16437.0	NR_151621	100045066.0	Mm.404734	NR_151621		Gm17767	-	predicted gene, 17767	ncRNA	5.72	1.84	7.4	4.72	5.6	0.0	3.17	1.33	1.25
Merged-chr15-77336590-1	chr15	77336090	77337090	+	544.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29537.0	NM_053104	93686.0	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.57	1.38	0.0	0.0	2.33	0.0	3.17	1.33	2.5
Merged-chr12-83730397-1	chr12	83729897	83730897	+	543.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362271, intron 9 of 11)	intron (NM_001362271, intron 9 of 11)	-33237.0	NM_001205343	170721.0	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	4.58	1.38	3.7	4.05	1.4	0.8	4.22	2.21	3.12
Merged-chr6-108662853-1	chr6	108662353	108663353	+	543.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011498, intron 4 of 4)	intron (NM_011498, intron 4 of 4)	-1919.0	NR_104577	75394.0	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	10.3	5.07	14.8	12.14	3.27	1.61	9.51	1.77	1.25
Merged-chr16-94066384-1	chr16	94065884	94066884	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1D2|LTR|ERVL-MaLR	-18876.0	NM_011377	20465.0	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded family bHLH transcription factor 2	protein-coding	1.72	2.76	4.62	9.45	2.8	3.22	5.28	8.4	7.49
Merged-chr7-68369965-1	chr7	68369465	68370465	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-47459.0	NR_046208	71244.0	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.0	0.92	2.77	0.0	0.93	2.41	2.11	0.0	0.0
Merged-chr3-58734028-1	chr3	58733528	58734528	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_045167, intron 3 of 7)	MTC|LTR|ERVL-MaLR	41439.0	NR_045167	71301.0	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	2.86	2.76	3.7	0.0	4.67	3.22	3.17	1.33	1.25
Merged-chr8-68277083-1	chr8	68276583	68277583	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028182, intron 1 of 8)	intron (NM_028182, intron 1 of 8)	555.0	NM_028182	72281.0	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	5.72	0.92	3.7	4.72	2.8	0.0	6.34	2.65	1.25
Merged-chr7-117481077-1	chr7	117480577	117481577	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175645, intron 2 of 11)	intron (NM_175645, intron 2 of 11)	100098.0	NM_175645	233781.0	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	10.87	5.53	5.55	7.42	12.13	12.06	0.0	3.98	5.0
Merged-chr7-5112822-1	chr7	5112322	5113322	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001145013, intron 2 of 2)	MTD|LTR|ERVL-MaLR	4089.0	NM_001145013	192658.0	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	6.29	8.29	9.25	6.75	9.8	18.49	17.96	4.42	8.74
Merged-chr17-13760689-1	chr17	13760189	13761189	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_010806, exon 1 of 33)	exon (NM_010806, exon 1 of 33)	148.0	NM_010806	17356.0	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	5.15	1.84	0.0	6.75	4.67	4.02	12.67	2.65	6.25
Merged-chr1-82235665-1	chr1	82235165	82236165	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_010570, exon 2 of 2)	3' UTR (NM_010570, exon 2 of 2)	55774.0	NM_010570	16367.0	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	4.58	3.23	5.55	3.37	4.67	0.8	1.06	3.1	4.37
Merged-chr5-107978999-1	chr5	107978499	107979499	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026062, intron 1 of 4)	intron (NM_026062, intron 1 of 4)	8078.0	NM_026062	67266.0	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	17.73	17.51	25.9	17.54	22.86	27.33	23.24	24.76	31.23
Merged-chr4-41756608-1	chr4	41756108	41757108	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NR_155499)	promoter-TSS (NR_155499)	398.0	NM_001302511	14430.0	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	23.45	25.8	17.57	43.18	20.06	18.49	42.25	23.88	29.98
Merged-chr3-97230309-1	chr3	97229809	97230809	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2945.0	NM_029933	77578.0	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	37.76	60.82	44.4	29.01	23.79	48.23	74.99	51.73	40.59
Merged-chr19-45544702-1	chr19	45544202	45545202	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	15862.0	NM_001330506	56626.0	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	11.44	3.23	1.85	5.4	6.06	3.22	3.17	6.19	6.25
Merged-chr16-5206303-1	chr16	5205803	5206803	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR12B2|LTR|ERVK	-2291.0	NR_027804	27426.0	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	4.58	4.15	2.77	2.02	4.2	4.82	5.28	2.21	4.37
Merged-chr4-129066513-1	chr4	129066013	129067013	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029219, intron 1 of 8)	L1_Mus2|LINE|L1	8242.0	NM_029219	75234.0	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	56.06	53.45	71.22	43.86	35.92	48.23	52.81	67.65	42.47
Merged-chr4-132793538-1	chr4	132793038	132794038	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001033308, intron 1 of 5)	RSINE1|SINE|B4	2826.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	129.28	140.54	92.5	121.45	121.76	90.02	152.09	218.87	115.54
Merged-chr17-15375872-1	chr17	15375372	15376372	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007865)	promoter-TSS (NM_007865)	-49.0	NM_007865	13388.0	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	4.0	4.15	11.1	2.02	3.27	4.82	6.34	2.21	2.5
Merged-chr4-115096310-1	chr4	115095810	115096810	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	7602.0	NM_001164557	67182.0	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	8.58	2.3	14.8	7.42	3.27	1.61	4.22	2.21	1.87
Merged-chr18-56745266-1	chr18	56744766	56745766	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010721, intron 8 of 10)	intron (NM_010721, intron 8 of 10)	37453.0	NM_010721	16906.0	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	8.01	5.53	1.85	5.4	1.87	1.61	0.0	1.33	4.37
Merged-chr10-100629947-1	chr10	100629447	100630447	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	37561.0	NM_001081246	66605.0	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	1.14	4.61	0.0	2.02	2.8	3.22	3.17	2.21	2.5
Merged-chr4-46041000-1	chr4	46040500	46041500	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021883, intron 1 of 9)	MIR3|SINE|MIR	1778.0	NM_021883	21916.0	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	6.29	4.15	4.62	2.02	0.93	6.43	2.11	1.33	5.0
Merged-chr2-71044302-1	chr2	71043802	71044802	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145524, intron 1 of 9)	intron (NM_145524, intron 1 of 9)	11304.0	NM_145524	228019.0	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	21.74	28.57	12.95	54.65	37.32	32.96	72.88	68.98	41.84
Merged-chr9-92147752-1	chr9	92147252	92148252	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-45184.0	NM_001195693	100504689.0	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	1.14	1.84	1.85	0.0	0.47	0.0	1.06	2.21	1.25
Merged-chr3-65002784-1	chr3	65002284	65003284	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357358, intron 1 of 13)	intron (NM_001357358, intron 1 of 13)	53572.0	NM_001357358	16497.0	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	2.29	3.69	1.85	2.02	2.33	1.61	3.17	3.1	2.5
Merged-chr10-21850461-1	chr10	21849961	21850961	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31723.0	NM_001161845	20393.0	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	6.86	4.15	7.4	12.82	8.86	15.27	5.28	2.65	5.62
Merged-chr19-60892355-1	chr19	60891855	60892855	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	2606.0	NM_018869	14773.0	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	4.0	2.3	3.7	4.05	6.06	5.63	4.22	0.88	2.5
Merged-chr1-137923868-1	chr1	137923368	137924368	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42587.0	NR_029795	735252.0		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	2.29	5.99	5.55	19.57	9.8	10.45	19.01	14.59	11.87
Merged-chr2-73513918-1	chr2	73513418	73514418	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153138, intron 1 of 7)	intron (NM_153138, intron 1 of 7)	15569.0	NM_153138	215280.0	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	32.61	33.18	49.95	45.88	21.93	61.09	45.42	27.86	21.23
Merged-chr4-53209405-1	chr4	53208905	53209905	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MLT1B|LTR|ERVL-MaLR	-36791.0	NR_040665	78180.0	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	4.0	3.23	9.25	10.8	1.87	4.82	2.11	4.86	5.62
Merged-chr8-84973809-1	chr8	84973309	84974309	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001317385, intron 5 of 5)	intron (NM_001317385, intron 5 of 5)	4187.0	NM_011563	21672.0	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	13.73	5.07	12.95	13.49	2.8	4.82	10.56	7.07	8.74
Merged-chr9-62828265-1	chr9	62827765	62828765	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID_B1|SINE|B4	-10522.0	NM_001033175	76524.0	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	35.47	37.32	17.57	47.9	32.66	25.72	38.02	38.91	11.24
Merged-chr3-41083977-1	chr3	41083477	41084477	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_027558)	promoter-TSS (NM_027558)	-931.0	NM_027558	70804.0	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	93.82	108.75	101.74	100.53	125.49	109.32	113.01	92.41	74.32
Merged-chr2-155442742-1	chr2	155442242	155443242	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-1959.0	NM_019825	56406.0	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	38.9	33.64	13.87	16.87	26.12	12.06	40.14	68.98	20.61
Merged-chrX-53710402-1	chrX	53709902	53710902	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110489, intron 5 of 6)	intron (NR_110489, intron 5 of 6)	6176.0	NR_110489	331578.0	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	1.72	1.38	1.85	2.7	0.47	3.22	6.34	2.65	1.25
Merged-chr9-65404840-1	chr9	65404340	65405340	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162923, intron 2 of 4)	L1MC4a|LINE|L1	6352.0	NM_001033158	70784.0	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	1.14	4.15	1.85	10.12	2.33	0.0	1.06	6.63	2.5
Merged-chr4-134251407-1	chr4	134250907	134251907	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001099296, exon 2 of 2)	exon (NM_001099296, exon 2 of 2)	2699.0	NM_001099296	72690.0	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	4.58	0.92	0.0	8.1	3.73	0.0	0.0	0.88	3.75
Merged-chr10-22356611-1	chr10	22356111	22357111	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-5283.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	5.15	3.23	5.55	4.72	3.73	4.02	4.22	2.21	1.25
Merged-chr2-38433923-1	chr2	38433423	38434423	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	-77774.0	NM_021606	59126.0	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	5.15	0.46	1.85	2.02	1.87	1.61	1.06	2.65	2.5
Merged-chr7-98052163-1	chr7	98051663	98052663	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_008663, intron 48 of 48)	intron (NM_008663, intron 48 of 48)	57085.0	NM_001256082	17921.0	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	6.29	2.76	6.47	1.35	1.87	9.65	6.34	1.77	3.75
Merged-chr16-56016572-1	chr16	56016072	56017072	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	3' UTR (NM_001024622, exon 5 of 5)	3' UTR (NM_001024622, exon 5 of 5)	13145.0	NM_001356449	76302.0	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	11.44	14.75	22.2	10.8	12.13	24.11	17.96	20.78	21.23
Merged-chr4-8699824-1	chr4	8699324	8700324	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001277149, intron 1 of 37)	RSINE1|SINE|B4	9418.0	NM_001277149	320790.0	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	33.75	37.32	39.77	52.63	37.79	50.64	39.08	42.01	39.35
Merged-chr2-75892248-1	chr2	75891748	75892748	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172666, intron 13 of 19)	intron (NM_172666, intron 13 of 19)	46214.0	NM_028235	72421.0	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	7.44	6.45	0.0	4.72	8.86	7.23	5.28	7.52	5.62
Merged-chr7-81211910-1	chr7	81211410	81212410	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1894.0	NM_008803	18584.0	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	20.02	22.58	17.57	43.86	31.72	45.82	20.07	30.95	26.23
Merged-chr14-63085920-1	chr14	63085420	63086420	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	30847.0	NR_046019	72609.0	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	27.46	37.78	38.85	37.78	27.06	61.09	40.14	37.58	33.72
Merged-chr7-114294723-1	chr7	114294223	114295223	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER1B|Other|Other	-18607.0	NM_011965	26440.0	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	1.14	4.61	2.77	14.17	5.13	13.66	5.28	0.44	2.5
Merged-chr2-58668197-1	chr2	58667697	58668697	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-86987.0	NM_001289659	76654.0	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.58	4.15	2.77	1.35	0.93	5.63	2.11	3.98	0.0
Merged-chr3-68778774-1	chr3	68778274	68779274	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17279.0	NR_153374	102639225.0	Mm.109095	NR_153374	ENSMUSG00000102936	Gm35584	-	predicted gene, 35584	ncRNA	0.57	3.69	1.85	4.05	3.73	3.22	3.17	1.77	0.0
Merged-chr7-107599635-1	chr7	107599135	107600135	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008905, intron 1 of 24)	intron (NM_008905, intron 1 of 24)	4584.0	NM_008905	19024.0	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	12.59	23.5	18.5	16.19	16.33	6.43	19.01	15.48	5.62
Merged-chr19-16872752-1	chr19	16872252	16873252	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_008023, exon 1 of 1)	exon (NM_008023, exon 1 of 1)	1078.0	NM_008023	14240.0	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	1.72	0.46	0.0	0.0	3.27	3.22	5.28	1.33	2.5
Merged-chr3-68046009-1	chr3	68045509	68046509	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113419, intron 2 of 10)	intron (NM_001113419, intron 2 of 10)	-18793.0	NM_001113420	30953.0	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	3.43	3.69	3.7	0.67	1.87	1.61	0.0	0.0	1.25
Merged-chrX-73673348-1	chrX	73672848	73673848	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_001142810, exon 1 of 13)	5' UTR (NM_001142810, exon 1 of 13)	215.0	NM_001142809	102857.0	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	4.0	2.3	4.62	10.12	2.33	1.61	2.11	1.33	3.75
Merged-chr17-35779151-1	chr17	35778651	35779651	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_045459, intron 2 of 2)	intron (NR_045459, intron 2 of 2)	6701.0	NR_045459	74601.0	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	3.43	1.84	0.0	16.19	4.2	4.82	17.96	7.96	14.36
Merged-chr2-3715623-1	chr2	3715123	3716123	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_025626, intron 1 of 3)	intron (NM_025626, intron 1 of 3)	2165.0	NM_025626	66540.0	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	4.0	11.06	5.55	2.7	4.2	3.22	8.45	7.96	2.5
Merged-chr9-72408440-1	chr9	72407940	72408940	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152222)	TTS (NR_152222)	1427.0	NR_152222	100502819.0	Mm.392319	NR_152222	ENSMUSG00000097211	BC065403	A930005F02Rik	cDNA sequence BC065403	ncRNA	4.58	2.3	3.7	6.75	4.2	3.22	6.34	0.88	5.0
Merged-chr11-85652304-1	chr11	85651804	85652804	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138681, intron 24 of 25)	L1MEc|LINE|L1	67440.0	NR_045875	71489.0	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	3.43	5.07	0.0	10.12	2.8	1.61	4.22	4.86	1.25
Merged-chr8-82361020-1	chr8	82360520	82361520	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008357, intron 2 of 7)	intron (NM_008357, intron 2 of 7)	41566.0	NM_001254747	16168.0	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	13.16	17.97	9.25	11.47	10.26	17.68	8.45	12.82	8.74
Merged-chr9-47643424-1	chr9	47642924	47643924	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	L1MC4a|LINE|L1	113072.0	NM_001025600	54725.0	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	76.66	72.8	49.02	98.51	51.32	61.89	85.55	74.28	44.97
Merged-chr9-13673478-1	chr9	13672978	13673978	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173776, intron 1 of 3)	intron (NM_173776, intron 1 of 3)	11018.0	NM_173776	270118.0	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like transcriptional coactivator 2	protein-coding	3.43	2.76	7.4	2.02	1.87	1.61	3.17	1.33	7.49
Merged-chr2-11554532-1	chr2	11554032	11555032	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001177758)	promoter-TSS (NM_001177758)	-603.0	NM_001177758	170768.0	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	102.97	93.54	65.67	91.76	96.57	75.56	88.72	84.01	54.33
Merged-chr6-5324845-1	chr6	5324345	5325345	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	-26472.0	NM_183308	330260.0	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	8.58	3.69	6.47	6.75	1.87	5.63	25.35	20.34	19.98
Merged-chr1-165612912-1	chr1	165612412	165613412	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001083897, intron 1 of 5)	RLTR19-int|LTR|ERVK	21629.0	NM_001001880	68481.0	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	8.01	11.52	11.1	12.82	15.86	16.08	7.39	7.52	9.99
Merged-chr14-103350086-1	chr14	103349586	103350586	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3286.0	NM_207215	105689.0	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	20.02	16.13	7.4	14.84	22.86	11.25	8.45	16.36	12.49
Merged-chr2-45245277-1	chr2	45244777	45245777	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-127835.0	NM_001355288	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	123.56	138.7	101.74	130.9	125.02	134.23	137.3	121.6	114.91
Merged-chr4-48046441-1	chr4	48045941	48046941	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_015743, intron 1 of 7)	intron (NM_015743, intron 1 of 7)	1136.0	NM_015743	18124.0	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	10.3	10.6	14.8	9.45	7.0	8.04	14.79	5.75	3.75
Merged-chr1-16305036-1	chr1	16304536	16305536	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001111272, intron 11 of 12)	intron (NM_001111272, intron 11 of 12)	199154.0	NM_133832	98711.0	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	1.14	0.92	3.7	3.37	3.73	3.22	5.28	3.1	5.0
Merged-chr6-134067157-1	chr6	134066657	134067657	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001303102, intron 2 of 8)	MTD|LTR|ERVL-MaLR	31457.0	NM_007961	14011.0	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	46.34	43.77	20.35	36.43	45.72	34.56	44.36	31.84	19.36
Merged-chr5-8423571-1	chr5	8423071	8424071	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190717)	promoter-TSS (NM_001190717)	733.0	NM_178766	319653.0	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	16.59	18.89	8.32	25.64	22.39	22.51	29.57	22.11	10.62
Merged-chr17-83997943-1	chr17	83997443	83998443	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NR_130994)	promoter-TSS (NR_130994)	-609.0	NR_130994	78148.0	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	3.43	1.38	3.7	4.72	0.47	0.0	4.22	0.88	1.25
Merged-chr12-3674242-1	chr12	3673742	3674742	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001162465, intron 8 of 17)	intron (NM_001162465, intron 8 of 17)	101258.0	NM_007886	13528.0	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	6.86	6.45	3.7	4.72	5.6	3.22	4.22	4.86	8.74
Merged-chr6-148993951-1	chr6	148993451	148994451	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_177192, intron 20 of 20)	intron (NM_177192, intron 20 of 20)	-47481.0	NM_001361398	56306.0	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Sinhcaf|Tera	family with sequence similarity 60, member A	protein-coding	3.43	3.69	3.7	4.72	1.4	6.43	2.11	5.31	5.0
Merged-chr9-59340177-1	chr9	59339677	59340677	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_153195, intron 5 of 15)	intron (NR_153195, intron 5 of 15)	13331.0	NM_001359558	102774.0	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	7.44	5.07	14.8	2.02	4.2	0.0	5.28	3.54	1.25
Merged-chr3-52444608-1	chr3	52444108	52445108	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-72356.0	NR_153344	102631981.0	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	13.73	10.14	18.5	14.17	11.2	1.61	11.62	11.94	3.75
Merged-chr14-33235879-1	chr14	33235379	33236379	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_153800, intron 2 of 10)	intron (NM_153800, intron 2 of 10)	19056.0	NM_153800	239027.0	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	14.87	15.67	33.3	24.29	19.59	31.35	7.39	13.71	17.49
Merged-chr10-80260025-1	chr10	80259525	80260525	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010255, intron 1 of 5)	intron (NM_010255, intron 1 of 5)	987.0	NM_001347119	14431.0	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	5.15	5.99	6.47	10.12	4.2	12.06	4.22	7.07	1.87
Merged-chr1-74322621-1	chr1	74322121	74323121	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001039509, intron 2 of 9)	intron (NM_001039509, intron 2 of 9)	-9989.0	NM_019999	56695.0	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	5.72	3.23	4.62	5.4	0.0	1.61	7.39	4.86	3.75
Merged-chr16-94625094-1	chr16	94624594	94625594	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113389, intron 2 of 11)	MLT1G1|LTR|ERVL-MaLR	13675.0	NM_001347731	13548.0	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	33.18	29.49	40.7	39.13	23.33	36.97	42.25	39.35	32.48
Merged-chr14-120275195-1	chr14	120274695	120275695	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_207515)	promoter-TSS (NM_207515)	-474.0	NM_207515	105559.0	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	30.32	30.41	14.8	50.6	36.85	50.64	46.47	33.16	20.61
Merged-chr11-77458440-1	chr11	77457940	77458940	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001291190, exon 14 of 14)	3' UTR (NM_001291190, exon 14 of 14)	-5473.0	NM_139129	216961.0	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	4.58	4.15	0.0	2.02	5.13	4.82	8.45	0.44	8.74
Merged-chr4-21879051-1	chr4	21878551	21879551	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_172687)	promoter-TSS (NM_172687)	-595.0	NM_172687	230027.0	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	25.17	29.95	26.82	30.36	32.19	35.37	34.85	28.3	26.23
Merged-chr5-86191567-1	chr5	86191067	86192067	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001310653, intron 1 of 1)	intron (NM_001310653, intron 1 of 1)	6334.0	NM_001310653	14715.0	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	6.29	8.75	12.95	6.75	1.4	1.61	11.62	13.27	3.12
Merged-chr11-65720148-1	chr11	65719648	65720648	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001316368, intron 3 of 10)	intron (NM_001316368, intron 3 of 10)	14684.0	NR_030417	791070.0		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	3.43	2.76	6.47	10.8	8.4	4.82	5.28	2.65	3.75
Merged-chr2-32385099-1	chr2	32384599	32385599	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008491, intron 5 of 5)	intron (NM_008491, intron 5 of 5)	2640.0	NM_008491	16819.0	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	5.15	1.38	2.77	6.75	1.4	4.82	2.11	7.07	5.0
Merged-chr12-75413922-1	chr12	75413422	75414422	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175644, intron 2 of 2)	intron (NM_175644, intron 2 of 2)	2859.0	NM_175644	217674.0	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	4.0	5.07	18.5	6.75	6.06	15.27	4.22	5.75	9.99
Merged-chr10-22358194-1	chr10	22357694	22358694	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009018, intron 6 of 6)	intron (NM_009018, intron 6 of 6)	-3700.0	NM_020030	56554.0	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	6.29	2.3	2.77	14.17	9.33	1.61	3.17	3.54	1.25
Merged-chr12-70101989-1	chr12	70101489	70102489	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001081453, intron 1 of 28)	intron (NM_001081453, intron 1 of 28)	865.0	NM_001081453	18080.0	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	3.43	4.61	1.85	7.42	5.13	3.22	4.22	4.42	0.62
Merged-chr12-82441803-1	chr12	82441303	82442303	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001167983, intron 21 of 23)	RLTR31D_MM|LTR|ERVK	130454.0	NM_172579	217692.0	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	12.01	7.83	7.4	4.72	6.53	6.43	8.45	5.75	6.25
Merged-chr12-76345956-1	chr12	76345456	76346456	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	21065.0	NM_001101471	238276.0	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	2.29	6.45	3.7	4.72	3.27	8.04	4.22	5.75	1.87
Merged-chr7-84089168-1	chr7	84088668	84089668	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2663.0	NM_030728	80982.0	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.57	2.76	1.85	2.02	3.27	1.61	2.11	3.54	2.5
Merged-chr4-57301847-1	chr4	57301347	57302347	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011207)	promoter-TSS (NM_011207)	-10.0	NM_011207	545622.0	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	2.29	2.76	3.7	5.4	4.2	4.82	1.06	1.77	1.25
Merged-chr2-112367433-1	chr2	112366933	112367933	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_026519, exon 2 of 5)	exon (NM_026519, exon 2 of 5)	594.0	NM_026519	68032.0	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	62.35	66.81	68.45	68.82	58.78	77.97	77.1	68.09	56.83
Merged-chr10-121316019-1	chr10	121315519	121316519	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361015, intron 2 of 12)	intron (NM_001361015, intron 2 of 12)	-4623.0	NM_029057	74694.0	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik|9530013E20Rik	TBC1 domain family, member 30	protein-coding	5.72	5.99	2.77	6.75	5.6	4.82	5.28	6.19	0.62
Merged-chr5-8911725-1	chr5	8911225	8912225	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008830, intron 8 of 27)	intron (NM_008830, intron 8 of 27)	18004.0	NM_008830	18670.0	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	1.72	1.84	2.77	4.72	0.47	0.0	1.06	0.88	2.5
Merged-chr19-36347686-1	chr19	36347186	36348186	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31381.0	NM_029508	76073.0	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	21.74	3.23	1.85	11.47	5.6	7.23	10.56	7.96	7.49
Merged-chr13-64108482-1	chr13	64107982	64108982	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001001321, intron 6 of 11)	intron (NM_001001321, intron 6 of 11)	-19281.0	NM_008291	15487.0	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	6.29	1.84	5.55	4.05	4.2	3.22	35.91	34.49	22.48
Merged-chr14-56402581-1	chr14	56402081	56403081	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_001033043)	promoter-TSS (NM_001033043)	-116.0	NM_001033043	30054.0	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	1.14	1.84	3.7	2.02	2.33	1.61	8.45	4.86	1.25
Merged-chr6-31213116-1	chr6	31212616	31213616	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5358.0	NR_110471	232685.0	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	9.15	15.67	6.47	13.49	7.0	12.86	9.51	14.59	7.49
Merged-chr5-114658418-1	chr5	114657918	114658918	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_022017)	promoter-TSS (NM_022017)	3.0	NM_022017	63873.0	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	37.18	27.65	41.62	54.65	43.39	55.46	27.46	13.71	18.74
Merged-chr3-115819570-1	chr3	115819070	115820070	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	68489.0	NR_027894	68161.0	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	6.86	2.76	0.0	8.77	2.8	8.84	8.45	3.98	2.5
Merged-chr1-72211757-1	chr1	72211257	72212257	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357488, intron 1 of 5)	CpG	550.0	NM_001005423	381269.0	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	8.58	5.53	0.92	11.47	3.27	1.61	8.45	4.42	1.25
Merged-chr5-25023164-1	chr5	25022664	25023664	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145401, intron 2 of 15)	intron (NM_145401, intron 2 of 15)	-27411.0	NM_001310480	108099.0	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	1.72	1.84	3.7	3.37	2.8	1.61	2.11	7.07	3.12
Merged-chr1-39896715-1	chr1	39896215	39897215	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	MLT1A1|LTR|ERVL-MaLR	-4198.0	NM_001252202	26921.0	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	5.72	2.76	0.0	6.07	0.93	4.82	3.17	1.33	1.25
Merged-chr19-5474445-1	chr19	5473945	5474945	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001164352)	promoter-TSS (NM_001164352)	-245.0	NM_021474	58859.0	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	9.15	13.82	30.52	25.64	8.86	28.13	16.9	10.61	5.0
Merged-chr2-18310451-1	chr2	18309951	18310951	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001190817, intron 3 of 12)	intron (NM_001190817, intron 3 of 12)	82379.0	NM_001190817	13418.0	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	3.43	8.29	6.47	10.8	10.73	12.86	10.56	3.98	8.74
Merged-chr3-89485359-1	chr3	89484859	89485859	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	25788.0	NM_027348	68603.0	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	2.29	1.84	6.47	4.72	2.8	3.22	7.39	2.65	0.0
Merged-chr2-90479319-1	chr2	90478819	90479819	+	543.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001135657)	promoter-TSS (NM_001135657)	-145.0	NM_001135657	19271.0	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	127.57	121.65	99.89	146.41	86.77	137.45	106.67	93.3	59.33
Merged-chr10-128083812-1	chr10	128083312	128084312	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016774, intron 1 of 9)	CpG	505.0	NM_016774	11947.0	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	Atp5f1b	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	98.39	104.6	91.57	120.77	120.83	118.16	110.9	118.5	66.2
Merged-chr19-3292218-1	chr19	3291718	3292718	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_172252, intron 6 of 6)	intron (NM_172252, intron 6 of 6)	3298.0	NR_105950	102465594.0		NR_105950	ENSMUSG00000099261	Mir6984	Gm27771|mmu-mir-6984	microRNA 6984	ncRNA	5.15	2.76	1.85	4.72	1.87	1.61	5.28	0.88	5.0
Merged-chr6-99519245-1	chr6	99518745	99519745	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	1748.0	NM_001347345	108655.0	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.86	2.76	3.7	2.7	1.87	1.61	4.22	3.98	3.75
Merged-chr10-91207504-1	chr10	91207004	91208004	+	543.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NR_151510)	TTS (NR_151510)	13115.0	NR_151510	102633753.0	Mm.416936	NR_151510		4930534H03Rik	-	RIKEN cDNA 4930534H03 gene	ncRNA	8.58	6.91	11.1	2.7	5.6	2.41	9.51	6.19	3.75
Merged-chr9-47787733-1	chr9	47787233	47788233	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	30475.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	5.72	4.15	5.55	3.37	6.06	13.66	0.0	0.44	7.49
Merged-chr13-107795098-1	chr13	107794598	107795598	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	94966.0	NM_145456	67263.0	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	9.72	7.37	11.1	7.42	6.53	8.04	12.67	10.61	16.86
Merged-chr7-43495586-1	chr7	43495086	43496086	+	543.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028737, intron 7 of 7)	intron (NM_028737, intron 7 of 7)	-5563.0	NM_001164518	210094.0	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	2.29	4.15	0.0	6.75	0.93	1.61	2.11	0.44	2.5
Merged-chr11-50259819-1	chr11	50259319	50260319	+	542.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175334, intron 4 of 4)	intron (NM_175334, intron 4 of 4)	-21287.0	NR_132733	17001.0	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	9.72	6.91	0.92	14.84	4.67	11.25	21.12	14.59	3.75
Merged-chr15-99670618-2	chr15	99670101	99671101	+	542.5	./atac_peak_files/aj_kupffer_control_young.idr|./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_009597, exon 1 of 12)	5' UTR (NM_009597, exon 1 of 12)	224.0	NM_009597	11419.0	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	6.29	0.0	3.7	2.7	0.47	1.61	3.17	1.77	1.25
Merged-chr4-128769432-1	chr4	128768932	128769932	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001009819)	TTS (NM_001009819)	10174.0	NM_001009819	215493.0	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	15.45	7.83	11.1	17.54	14.0	9.65	6.34	3.54	1.25
Merged-chr17-29033913-1	chr17	29033413	29034413	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_036613, intron 1 of 6)	B1_Mm|SINE|Alu	1253.0	NR_036613	20383.0	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	66.36	63.13	47.17	53.98	54.11	36.17	63.37	42.01	21.23
Merged-chr15-4580748-1	chr15	4580248	4581248	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-146462.0	NM_016704	12274.0	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	6.86	4.61	1.85	4.72	4.67	1.61	4.22	4.42	1.25
Merged-chr1-87653279-1	chr1	87652779	87653779	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110192, intron 2 of 26)	intron (NM_001110192, intron 2 of 26)	32967.0	NM_010566	16331.0	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	74.94	56.22	36.07	70.85	40.59	73.14	74.99	72.07	38.1
Merged-chr16-17147628-1	chr16	17147128	17148128	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_001306169)	promoter-TSS (NM_001306169)	-399.0	NM_001306169	76872.0	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	9.15	3.69	1.85	8.77	4.67	3.22	6.34	5.31	0.0
Merged-chr17-71252475-1	chr17	71251975	71252975	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001357336, exon 8 of 8)	3' UTR (NM_001357336, exon 8 of 8)	47821.0	NM_001164885	64898.0	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	12.01	9.22	21.27	27.66	8.86	28.13	6.34	4.86	8.74
Merged-chr12-80730730-1	chr12	80730230	80731230	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	29985.0	NM_001008423	380768.0	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	2.29	5.53	0.0	6.07	3.73	4.82	4.22	3.98	5.0
Merged-chr2-30436299-1	chr2	30435799	30436799	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_138748, intron 5 of 9)	intron (NM_138748, intron 5 of 9)	20249.0	NM_138748	110854.0	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	9.72	5.99	19.42	20.24	13.06	19.29	15.84	12.38	11.24
Merged-chr1-127318528-1	chr1	127318028	127319028	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145128, intron 3 of 17)	CT-rich|Low_complexity|Low_complexity	113542.0	NM_145128	107895.0	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	5.15	2.3	0.0	0.67	2.33	3.22	2.11	1.77	1.25
Merged-chr11-102190981-1	chr11	102190481	102191481	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175935, intron 1 of 5)	intron (NM_175935, intron 1 of 5)	1282.0	NM_175935	68401.0	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	20.59	16.13	21.27	25.64	18.19	23.31	27.46	16.8	21.86
Merged-chr1-124103204-1	chr1	124102704	124103704	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B3A|SINE|B2	-57645.0	NM_199021	269109.0	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	4.0	4.15	3.7	3.37	0.93	1.61	2.11	0.88	8.74
Merged-chr18-39481704-1	chr18	39481204	39482204	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	5541.0	NM_008173	14815.0	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	15.45	25.34	11.1	20.24	17.26	18.49	41.19	24.32	1.87
Merged-chr4-132784024-1	chr4	132783524	132784524	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033308, intron 4 of 5)	intron (NM_001033308, intron 4 of 5)	12340.0	NM_001033308	230787.0	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	38.9	31.79	42.55	37.78	36.85	48.23	63.37	78.26	27.48
Merged-chr1-4963370-1	chr1	4962870	4963870	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001177795, intron 2 of 5)	MTD|LTR|ERVL-MaLR	55364.0	NM_001290372	58175.0	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.57	3.69	7.4	8.77	7.46	9.65	11.62	7.52	6.25
Merged-chr12-73322757-1	chr12	73322257	73323257	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 5 of 15)	intron (NM_001037717, intron 5 of 15)	35909.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	4.58	5.53	24.05	7.42	4.2	10.45	6.34	3.1	9.99
Merged-chr6-124425786-1	chr6	124425286	124426286	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-9931.0	NM_001360570	19305.0	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	8.58	4.61	12.95	12.82	5.13	12.86	11.62	7.52	7.49
Merged-chr2-27728764-1	chr2	27728264	27729264	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001290482, intron 1 of 9)	intron (NM_001290482, intron 1 of 9)	18181.0	NM_001290482	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	155.03	158.97	126.72	146.41	154.41	170.4	145.75	133.09	94.93
Merged-chr7-111663292-1	chr7	111662792	111663792	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001360903, intron 1 of 10)	intron (NM_001360903, intron 1 of 10)	116685.0	NM_001360903	233733.0	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4|galNAc-T18|mpp-GalNAc-T18(O18)	polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	2.86	3.69	3.7	2.02	2.33	8.04	1.06	3.54	2.5
Merged-chr11-79974262-1	chr11	79973762	79974762	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	CpG	-11875.0	NM_144826	216987.0	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.0	4.15	7.4	4.72	4.2	5.63	4.22	4.86	1.25
Merged-chr15-6388795-1	chr15	6388295	6389295	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037905, intron 1 of 13)	ID_B1|SINE|B4	2047.0	NM_001310446	13132.0	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	31.46	46.54	37.92	37.11	54.58	41.8	38.02	24.32	19.36
Merged-chr2-24385855-1	chr2	24385355	24386355	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001355232)	promoter-TSS (NM_001355232)	523.0	NM_177611	215632.0	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	73.22	84.78	65.67	61.4	41.05	55.46	85.55	75.17	54.33
Merged-chr18-47734934-1	chr18	47734434	47735434	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	54599.0	NR_152200	100042982.0	Mm.125235	NR_152200		Gm4146	Gm45939	predicted gene 4146	ncRNA	0.57	3.23	1.85	9.45	4.67	0.0	1.06	0.44	1.25
Merged-chr1-171871909-1	chr1	171871409	171872409	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289470, intron 3 of 8)	MER63C|DNA|hAT-Blackjack	32212.0	NM_013489	12523.0	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	12.01	4.15	11.1	6.07	7.93	15.27	8.45	7.52	11.24
Merged-chr15-78610467-1	chr15	78609967	78610967	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028195, intron 7 of 12)	intron (NM_028195, intron 7 of 12)	13420.0	NM_028195	72318.0	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	19.45	12.44	12.95	18.22	15.86	16.08	10.56	18.13	29.98
Merged-chr12-44936885-1	chr12	44936385	44937385	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	137598.0	NM_144552	217517.0	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	1.72	0.0	6.47	1.35	1.87	8.84	1.06	3.54	1.25
Merged-chr6-81412541-1	chr6	81412041	81413041	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx8|LINE|L1	483122.0	NR_106091	102465711.0		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	2.86	1.84	3.7	0.67	5.13	1.61	2.11	1.77	0.62
Merged-chr3-94841629-1	chr3	94841129	94842129	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	4062.0	NM_172683	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	3.43	8.75	3.7	5.4	2.33	15.27	2.11	3.54	5.0
Merged-chr16-55778703-1	chr16	55778203	55779203	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx9|LINE|L1	43435.0	NM_001159394	80859.0	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.72	2.3	3.7	5.4	2.8	1.61	5.28	1.33	2.5
Merged-chr1-169459573-1	chr1	169459073	169460073	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	71891.0	NM_023284	66977.0	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.57	2.76	5.55	1.35	1.87	0.0	3.17	1.33	3.75
Merged-chr11-29148747-1	chr11	29148247	29149247	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_027869, intron 18 of 27)	intron (NM_027869, intron 18 of 27)	17996.0	NM_027869	71701.0	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	32.61	29.95	17.57	30.36	31.26	25.72	76.05	91.97	36.85
Merged-chr5-38516437-1	chr5	38515937	38516937	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-14285.0	NM_145559	117591.0	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	5.72	0.0	0.0	4.72	1.87	4.82	3.17	0.88	3.75
Merged-chr2-132570943-1	chr2	132570443	132571443	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001355651, intron 2 of 19)	B2_Mm2|SINE|B2	7305.0	NM_001291050	74182.0	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	14.3	21.66	9.25	22.94	11.2	9.65	12.67	13.27	13.12
Merged-chr5-86066283-1	chr5	86065783	86066783	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_007683)	promoter-TSS (NM_007683)	-700.0	NM_007683	12617.0	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	85.81	90.31	77.7	71.52	93.77	81.99	82.38	112.31	39.35
Merged-chr9-121419812-1	chr9	121419312	121420312	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357968, intron 1 of 14)	intron (NM_001357968, intron 1 of 14)	16366.0	NM_001357968	67095.0	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	9.72	6.45	0.92	2.02	7.0	7.23	6.34	4.86	10.62
Merged-chr14-27337346-1	chr14	27336846	27337846	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	1309.0	NM_001289687	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	44.62	70.96	60.12	56.68	51.78	49.83	119.35	77.38	43.09
Merged-chr5-110613604-1	chr5	110613104	110614104	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_104449, intron 1 of 5)	ORR1D2|LTR|ERVL-MaLR	10099.0	NR_104449	231605.0	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.57	4.61	5.55	0.67	1.87	4.82	3.17	1.33	1.25
Merged-chr2-144330678-1	chr2	144330178	144331178	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026924, intron 2 of 3)	CpG	684.0	NM_152947	107586.0	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	2.86	1.38	0.0	6.07	1.4	1.61	1.06	1.77	1.25
Merged-chr5-16424924-1	chr5	16424424	16425424	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RMER13B|LTR|ERVK	-128571.0	NM_001289460	15234.0	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	5.15	3.69	0.0	2.02	2.8	0.0	0.0	5.31	3.75
Merged-chr3-94821495-1	chr3	94820995	94821995	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16072.0	NM_001165948	229584.0	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	28.6	25.8	11.1	22.94	17.73	27.33	15.84	18.57	18.74
Merged-chr5-150841374-1	chr5	150840874	150841874	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTD|LTR|ERVL-MaLR	-111233.0	NM_013823	16591.0	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	23.45	25.8	11.1	21.59	27.52	32.15	29.57	33.16	26.85
Merged-chr7-132475251-1	chr7	132474751	132475751	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	101147.0	NM_016978	18242.0	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	2.29	3.69	0.0	1.35	1.4	1.61	1.06	0.44	5.0
Merged-chr9-62366890-1	chr9	62366390	62367390	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	25547.0	NM_009672	11737.0	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	26.89	22.12	16.65	12.14	8.4	9.65	10.56	4.86	8.74
Merged-chr14-8109237-1	chr14	8108737	8109737	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001360314, intron 1 of 19)	RMER15|LTR|ERVL	11026.0	NM_001360315	218699.0	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|Monaka|Slob	PX domain containing serine/threonine kinase	protein-coding	12.59	17.97	19.42	19.57	12.13	20.09	26.4	13.27	11.24
Merged-chr17-32166100-1	chr17	32165600	32166600	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008716, intron 1 of 32)	CpG	752.0	NM_008716	18131.0	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.58	3.69	3.7	8.1	1.4	1.61	4.22	0.0	3.75
Merged-chr1-21071254-1	chr1	21070754	21071754	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177409, intron 1 of 10)	intron (NM_177409, intron 1 of 10)	7971.0	NM_177409	170829.0	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	18.31	16.13	19.42	17.54	23.33	45.82	8.45	5.31	3.12
Merged-chr4-117130720-1	chr4	117130220	117131220	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001313916, intron 10 of 14)	intron (NM_001313916, intron 10 of 14)	3243.0	NM_013807	12795.0	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo like kinase 3	protein-coding	2.86	3.23	4.62	7.42	1.4	1.61	10.56	5.31	5.0
Merged-chr5-137290827-1	chr5	137290327	137291327	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001290010, exon 2 of 5)	exon (NM_001290010, exon 2 of 5)	2573.0	NM_001290010	11423.0	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	9.15	3.23	0.0	2.7	3.27	2.41	4.22	1.33	9.37
Merged-chr11-97719281-1	chr11	97718781	97719781	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_054051, intron 9 of 9)	intron (NM_054051, intron 9 of 9)	15847.0	NM_011971	26446.0	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	49.77	41.47	25.9	69.5	34.06	32.96	78.16	59.25	25.61
Merged-chr15-31566773-1	chr15	31566273	31567273	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx5|LINE|L1	-2060.0	NM_181588	69574.0	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	7.44	8.29	11.1	7.42	7.0	20.9	2.11	4.86	9.37
Merged-chr4-107783678-1	chr4	107783178	107784178	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	ID4_|SINE|ID	-18581.0	NR_033496	16975.0	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.57	0.92	1.85	8.1	0.93	3.22	1.06	3.1	5.0
Merged-chr5-118595112-1	chr5	118594612	118595612	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	34393.0	NM_172424	76199.0	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.43	1.84	0.0	2.7	1.4	1.61	1.06	1.33	0.0
Merged-chr14-27355800-1	chr14	27355300	27356300	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-5589.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	84.09	101.37	84.17	126.85	88.17	95.65	135.19	115.85	102.42
Merged-chr2-18840143-1	chr2	18839643	18840643	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1MA5A|LINE|L1	-38325.0	NR_131254	66774.0	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	6.29	1.84	6.47	3.37	4.2	2.41	3.17	2.21	0.0
Merged-chr5-143472873-1	chr5	143472373	143473373	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_144915, intron 2 of 14)	intron (NM_144915, intron 2 of 14)	8380.0	NM_144915	231871.0	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	28.6	10.6	49.02	41.83	14.46	26.53	20.07	25.2	15.61
Merged-chr18-41954095-1	chr18	41953595	41954595	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2901.0	NM_029942	77619.0	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	17.73	17.97	5.55	20.24	4.67	14.47	3.17	7.07	3.75
Merged-chr7-100497614-1	chr7	100497114	100498114	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_011671, intron 4 of 7)	intron (NM_011671, intron 4 of 7)	4256.0	NM_011671	22228.0	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8|UCP 2|UCPH	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	45.19	23.5	35.15	49.25	26.59	43.4	29.57	27.41	31.23
Merged-chr17-28879991-1	chr17	28879491	28880491	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001034885, intron 5 of 9)	intron (NM_001034885, intron 5 of 9)	21580.0	NM_001034885	433091.0	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	4.58	3.23	1.85	1.35	1.4	0.0	2.11	1.33	0.0
Merged-chr18-69629906-1	chr18	69629406	69630406	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001361128, intron 8 of 19)	intron (NM_001361128, intron 8 of 19)	283746.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.72	8.75	9.25	16.19	7.46	11.25	8.45	2.65	8.12
Merged-chr8-72013697-1	chr8	72013197	72014197	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx|LINE|L1	-4071.0	NM_024444	72054.0	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	16.59	16.59	31.45	0.0	1.87	3.22	15.84	21.22	16.86
Merged-chr8-33902966-1	chr8	33902466	33903466	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001042675, intron 1 of 6)	intron (NM_001042675, intron 1 of 6)	26897.0	NM_019733	19663.0	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	3.43	0.46	1.85	2.7	0.0	1.61	15.84	9.73	5.62
Merged-chr7-109516918-1	chr7	109516418	109517418	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-2277.0	NM_011975	26451.0	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	9.72	5.53	10.17	14.84	4.2	3.22	6.34	7.07	9.37
Merged-chr10-6983884-1	chr10	6983384	6984384	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039652, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	-3419.0	NM_001170801	320495.0	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	9.72	10.14	12.02	6.07	6.06	11.25	8.45	5.31	3.75
Merged-chr11-83224967-1	chr11	83224467	83225467	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_015519, intron 3 of 3)	RMER17C|LTR|ERVK	1391.0	NR_015519	100043636.0	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	272.3	315.64	132.27	224.68	293.9	172.01	184.83	259.99	106.17
Merged-chr18-74190220-1	chr18	74189720	74190720	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	17598.0	NM_001164355	66468.0	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	6.86	9.22	7.4	7.42	5.13	1.61	2.11	0.88	2.5
Merged-chr9-108346382-1	chr9	108345882	108346882	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	B1_Mus2|SINE|Alu	-1449.0	NM_001311157	22258.0	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	28.6	36.4	37.0	24.96	14.0	36.97	30.63	48.2	55.58
Merged-chr5-146734232-1	chr5	146733732	146734732	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_011669)	TTS (NM_011669)	60724.0	NM_011669	22217.0	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	2.29	5.07	9.25	8.1	5.13	2.41	11.62	1.33	9.99
Merged-chr4-136034695-1	chr4	136034195	136035195	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-13046.0	NM_013736	27224.0	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	25.74	31.79	23.12	37.78	22.86	26.53	21.12	22.11	23.11
Merged-chr7-4572062-1	chr7	4571562	4572562	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_207270, intron 7 of 19)	intron (NM_207270, intron 7 of 19)	-24521.0	NM_001360422	53420.0	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	9.72	11.52	12.02	7.42	2.8	18.49	7.39	6.63	5.0
Merged-chr2-155134296-1	chr2	155133796	155134796	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001243712, intron 1 of 25)	intron (NM_001243712, intron 1 of 25)	815.0	NM_008395	16396.0	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	233.97	187.08	150.77	195.67	118.96	155.93	272.5	217.99	126.15
Merged-chr9-90200743-1	chr9	90200243	90201243	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001326294)	TTS (NM_001326294)	37765.0	NM_001311115	108153.0	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	4.0	4.61	1.85	3.37	2.33	6.43	6.34	3.1	8.74
Merged-chr6-82125403-1	chr6	82124903	82125903	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	83775.0	NM_145570	232146.0	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	2.86	2.3	3.7	3.37	1.87	2.41	2.11	1.33	0.0
Merged-chr10-80696703-1	chr10	80696203	80697203	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172457, intron 1 of 3)	intron (NM_172457, intron 1 of 3)	5117.0	NM_172457	208228.0	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	136.15	116.58	66.6	114.03	69.98	57.87	81.33	136.19	81.81
Merged-chr9-47772022-1	chr9	47771522	47772522	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	46186.0	NR_046048	100038460.0	Mm.447649	NR_046048		Gm10677	-	predicted gene 10677	ncRNA	10.87	14.75	15.72	13.49	9.33	16.08	6.34	6.63	6.87
Merged-chr3-135485990-1	chr3	135485490	135486490	+	542.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027288, intron 1 of 16)	intron (NM_027288, intron 1 of 16)	379.0	NM_027288	110173.0	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	58.92	43.31	55.5	65.45	50.85	56.27	70.76	47.31	33.1
Merged-chr17-51111426-1	chr17	51110926	51111926	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	47952.0	NM_001285993	72238.0	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	7.44	3.23	1.85	4.05	10.26	4.02	3.17	9.73	1.25
Merged-chr16-90219817-1	chr16	90219317	90220317	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_011434)	promoter-TSS (NM_011434)	-925.0	NM_011434	20655.0	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	53.77	24.88	15.72	56.68	25.66	26.53	47.53	32.72	9.99
Merged-chr6-72092838-1	chr6	72092338	72093338	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F1|SINE|Alu	-4770.0	NM_001035228	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	21.17	25.34	19.42	24.96	15.39	37.78	34.85	22.55	24.36
Merged-chrX-164962993-1	chrX	164962493	164963493	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_029730, intron 4 of 14)	intron (NM_029730, intron 4 of 14)	17382.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	1.14	3.23	14.8	4.05	5.13	8.04	1.06	5.31	6.87
Merged-chr19-43584969-1	chr19	43584469	43585469	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27356.0	NM_008699	18089.0	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	4.58	1.84	0.0	4.05	2.33	4.02	2.11	1.33	5.0
Merged-chr4-101670591-1	chr4	101670091	101671091	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR49|LTR|ERVK	22808.0	NM_175036	230514.0	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	5.15	3.69	9.25	6.07	10.26	14.47	8.45	2.65	2.5
Merged-chr9-61590116-1	chr9	61589616	61590616	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	217750.0	NM_001083927	21887.0	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	4.58	3.23	1.85	2.02	1.4	5.63	2.11	3.54	1.25
Merged-chr2-36252712-1	chr2	36252212	36253212	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_008969)	TTS (NM_008969)	22286.0	NM_008969	19224.0	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	13.73	15.21	14.8	7.42	8.86	18.49	19.01	11.05	12.49
Merged-chr10-37323132-1	chr10	37322632	37323632	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-184206.0	NM_008538	17118.0	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	15.45	10.14	1.85	7.42	4.2	6.43	12.67	4.42	3.75
Merged-chr2-65396258-1	chr2	65395758	65396758	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31858.0	NR_105755	102466151.0		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	3.43	1.84	0.0	2.02	1.4	9.65	3.17	1.77	0.0
Merged-chr13-3546854-1	chr13	3546354	3547354	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008112, intron 1 of 10)	RMER6A|LTR|ERVK	8779.0	NM_008112	14569.0	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	24.6	40.09	46.25	21.59	17.73	33.76	16.9	21.22	27.48
Merged-chr2-94470887-1	chr2	94470387	94471387	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-32701.0	NM_001349003	11800.0	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	3.43	4.61	0.0	2.02	2.33	3.22	2.11	1.33	1.25
Merged-chr10-7673847-1	chr10	7673347	7674347	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_145706, intron 5 of 7)	B3|SINE|B2	6343.0	NM_145706	69912.0	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	5.15	4.61	5.55	2.02	3.27	2.41	6.34	3.54	3.75
Merged-chrX-170677857-1	chrX	170677357	170678357	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001199212, exon 8 of 8)	exon (NM_001199212, exon 8 of 8)	5213.0	NM_001199212	107626.0	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	6.29	3.23	7.4	5.4	0.0	5.63	6.34	3.1	3.75
Merged-chr7-46770863-1	chr7	46770363	46771363	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001005247, intron 16 of 22)	intron (NM_001005247, intron 16 of 22)	19030.0	NM_001357491	20209.0	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	2.86	3.69	1.85	2.02	0.93	4.82	1.06	1.33	5.0
Merged-chr13-44673823-1	chr13	44673323	44674323	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-56951.0	NM_021878	16468.0	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	4.0	1.38	1.85	8.1	6.53	3.22	6.34	1.77	1.87
Merged-chr11-94676664-1	chr11	94676164	94677164	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_145828, intron 1 of 10)	intron (NM_145828, intron 1 of 10)	829.0	NM_145828	217119.0	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	27.46	15.67	19.42	41.83	28.46	29.74	50.7	29.18	24.36
Merged-chr11-55121523-1	chr11	55121023	55122023	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	G-rich|Low_complexity|Low_complexity	23538.0	NM_010299	14667.0	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	10.3	8.29	7.4	12.14	7.46	12.86	10.56	5.31	2.5
Merged-chr5-120600482-1	chr5	120599982	120600982	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_029408, exon 2 of 5)	exon (NM_029408, exon 2 of 5)	11459.0	NM_029408	75732.0	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	8.01	3.23	9.25	3.37	3.27	1.61	4.22	6.63	2.5
Merged-chr1-151575377-1	chr1	151574877	151575877	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	4004.0	NM_022018	63913.0	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	11.44	13.36	5.55	27.66	16.33	24.92	43.3	36.26	32.48
Merged-chr9-90251916-1	chr9	90251416	90252416	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_194334, intron 1 of 12)	intron (NM_194334, intron 1 of 12)	18853.0	NM_194334	67016.0	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	56.06	60.82	63.82	62.75	46.65	86.01	72.88	56.16	59.33
Merged-chr6-8336995-1	chr6	8336495	8337495	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001302354, intron 2 of 3)	intron (NM_001302354, intron 2 of 3)	77707.0	NM_001302353	100036521.0	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	26.31	42.85	26.82	26.31	36.39	25.72	39.08	51.29	11.24
Merged-chr18-9507967-1	chr18	9507467	9508467	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-57813.0	NM_026484	67974.0	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	12.01	12.44	8.32	23.62	20.06	8.04	22.18	26.09	2.5
Merged-chr11-64835304-1	chr11	64834804	64835804	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-143731.0	NM_023479	68626.0	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	8.58	10.6	9.25	5.4	3.73	4.82	21.12	15.03	23.11
Merged-chr11-100692479-1	chr11	100691979	100692979	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11792.0	NM_030150	80861.0	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	5.15	0.92	2.77	6.07	3.73	4.82	0.0	3.1	6.25
Merged-chr5-124530188-1	chr5	124529688	124530688	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_021430, intron 1 of 6)	intron (NM_021430, intron 1 of 6)	1203.0	NM_021430	75695.0	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	29.75	16.59	18.5	20.92	19.13	20.09	15.84	14.59	6.87
Merged-chr1-107492676-1	chr1	107492176	107493176	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTE2b|LTR|ERVL-MaLR	-18747.0	NM_001174170	18788.0	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	2.29	3.69	5.55	7.42	0.93	3.22	3.17	0.88	1.25
Merged-chr3-31087795-1	chr3	31087295	31088295	+	542.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-7263.0	NM_001039090	20482.0	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	12.01	2.76	9.25	5.4	7.0	3.22	10.56	3.98	3.12
Merged-chr4-150194139-1	chr4	150193639	150194639	+	542.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009802, intron 4 of 7)	B3|SINE|B2	6996.0	NM_009802	12353.0	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	6.86	1.38	0.0	5.4	5.13	5.63	5.28	0.0	2.5
Merged-chr10-81412294-1	chr10	81411794	81412794	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NR_152732)	TTS (NR_152732)	2719.0	NR_152732	102634174.0	Mm.392213	NR_152732	ENSMUSG00000085327	Gm16104	-	predicted gene 16104	ncRNA	41.76	55.29	40.7	42.51	32.66	40.19	40.14	38.91	31.23
Merged-chr8-88635524-1	chr8	88635024	88636024	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_027840, intron 1 of 3)	intron (NM_027840, intron 1 of 3)	604.0	NM_027840	71607.0	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	184.77	220.72	223.84	85.01	71.38	101.28	223.91	269.28	129.9
Merged-chr18-6244352-1	chr18	6243852	6244852	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MTC|LTR|ERVL-MaLR	-2828.0	NM_008448	16573.0	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	9.72	10.6	26.82	6.75	13.53	28.94	14.79	12.82	15.61
Merged-chr17-29496009-1	chr17	29495509	29496509	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_008842)	TTS (NM_008842)	4964.0	NM_008842	18712.0	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	14.87	9.22	16.65	7.42	2.8	4.02	1.06	5.75	3.75
Merged-chr1-136234240-1	chr1	136233740	136234740	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_028872)	promoter-TSS (NM_028872)	40.0	NM_028872	67313.0	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54|Inava	RIKEN cDNA 5730559C18 gene	protein-coding	4.58	3.23	0.0	6.75	2.8	4.82	2.11	0.0	5.0
Merged-chrX-164946700-1	chrX	164946200	164947200	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_029730, intron 10 of 14)	intron (NM_029730, intron 10 of 14)	33675.0	NM_001290523	76763.0	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	10.87	14.75	0.0	10.8	5.13	3.22	5.28	10.61	9.99
Merged-chr16-58016999-1	chr16	58016499	58017499	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-262262.0	NM_007739	12837.0	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	8.58	7.83	5.55	6.07	11.66	1.61	5.28	2.21	1.25
Merged-chr16-31928465-1	chr16	31927965	31928965	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Lx7|LINE|L1	-5386.0	NM_172822	239827.0	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	19.45	28.57	18.5	22.94	11.2	4.82	28.52	17.69	19.98
Merged-chr15-79934254-1	chr15	79933754	79934754	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	L1MEg|LINE|L1	-1608.0	NM_144811	52609.0	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	5.72	5.07	1.85	4.72	1.4	3.22	8.45	2.65	5.62
Merged-chr11-75532491-1	chr11	75531991	75532991	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001199283, intron 1 of 13)	intron (NM_001199283, intron 1 of 13)	379.0	NM_001199283	215113.0	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	107.55	98.15	101.74	115.38	91.44	121.37	125.69	128.67	76.19
Merged-chr11-64396530-1	chr11	64396030	64397030	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-38802.0	NM_178870	15478.0	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	4.0	4.15	5.55	1.35	6.06	3.22	4.22	2.65	8.74
Merged-chr3-104780146-1	chr3	104779646	104780646	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_027982)	promoter-TSS (NM_027982)	-910.0	NM_027982	71887.0	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	3.43	3.69	0.0	4.05	3.27	1.61	3.17	3.98	5.62
Merged-chr10-19562798-1	chr10	19562298	19563298	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-29151.0	NM_010511	15979.0	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	8.58	7.83	11.1	9.45	5.13	8.04	8.45	5.31	13.74
Merged-chr5-130075947-1	chr5	130075447	130076447	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_013837, intron 1 of 5)	(TTTTG)n|Simple_repeat|Simple_repeat	2621.0	NM_013837	22021.0	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	4.0	8.75	4.62	4.72	3.27	0.0	2.11	4.42	6.25
Merged-chr11-32567551-1	chr11	32567051	32568051	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 2 of 18)	intron (NM_009288, intron 2 of 18)	34285.0	NM_001359177	20868.0	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	17.16	10.6	1.85	14.17	7.93	19.29	4.22	7.52	11.24
Merged-chr5-67756378-1	chr5	67755878	67756878	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009727, intron 14 of 35)	intron (NM_009727, intron 14 of 35)	91053.0	NM_009727	11980.0	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.86	5.53	3.7	7.42	0.93	8.84	8.45	3.54	5.0
Merged-chr5-99279218-1	chr5	99278718	99279718	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-26291.0	NM_145839	320292.0	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	29.17	25.8	9.25	16.19	17.73	14.47	8.45	8.84	6.25
Merged-chr9-3184564-1	chr9	3184064	3185064	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15249.0	NR_027988	114673.0	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	6.86	5.53	9.25	2.7	2.8	4.02	3.17	2.21	6.25
Merged-chr11-87986169-1	chr11	87985669	87986669	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001168471, intron 1 of 2)	intron (NM_001168471, intron 1 of 2)	416.0	NM_001168472	68097.0	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	13.73	16.59	7.4	15.52	13.53	11.25	31.69	12.38	14.36
Merged-chr14-27352629-1	chr14	27352129	27353129	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289687, intron 1 of 9)	intron (NM_001289687, intron 1 of 9)	-8760.0	NM_001289688	71704.0	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	26.31	34.1	15.72	24.96	25.19	29.74	27.46	19.9	21.86
Merged-chr1-177984261-1	chr1	177983761	177984761	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-7137.0	NR_155538	545391.0	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	13.16	11.06	3.7	4.72	1.87	6.43	7.39	6.63	1.25
Merged-chr19-5068056-1	chr19	5067556	5068556	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_054042)	promoter-TSS (NM_054042)	-22.0	NM_054042	70445.0	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.57	2.76	1.85	4.72	0.93	1.61	3.17	0.44	1.87
Merged-chr3-90220331-1	chr3	90219831	90220831	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	promoter-TSS (NM_026677)	promoter-TSS (NM_026677)	-453.0	NM_026677	68328.0	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	30.32	40.55	44.4	27.66	37.32	36.17	26.4	26.09	33.1
Merged-chr14-63127030-1	chr14	63126530	63127530	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_007798, intron 1 of 9)	ID_B1|SINE|B4	4568.0	NM_007798	13030.0	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	162.46	227.63	117.47	180.15	209.46	139.06	246.09	234.35	97.43
Merged-chr6-34994836-1	chr6	34994336	34995336	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-16837.0	NM_001025573	243753.0	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	6.29	6.91	3.7	8.77	4.67	0.0	9.51	3.98	5.62
Merged-chr1-191227826-1	chr1	191227326	191228326	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	3372.0	NR_151547	100504360.0	Mm.16927	NM_001033188		D730003I15Rik	AU020850	RIKEN cDNA D730003I15 gene	ncRNA	18.31	5.99	5.55	14.17	9.33	9.65	10.56	6.19	5.62
Merged-chr13-37855524-1	chr13	37855024	37856024	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039188, intron 1 of 9)	intron (NM_001039188, intron 1 of 9)	28131.0	NM_001039188	68750.0	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	34.32	57.6	21.27	43.18	41.52	53.05	59.15	63.67	22.48
Merged-chr18-24074550-1	chr18	24074050	24075050	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	47269.0	NM_172625	225280.0	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	5.15	5.53	11.1	4.72	7.46	3.22	16.9	6.63	6.25
Merged-chr2-45069487-1	chr2	45068987	45069987	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001355291, intron 2 of 9)	intron (NM_001355291, intron 2 of 9)	40790.0	NM_001289521	24136.0	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	30.89	21.66	19.42	10.8	17.73	31.35	13.73	14.59	14.99
Merged-chr4-63868981-1	chr4	63868481	63869481	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-7697.0	NM_009403	21949.0	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	7.44	10.14	3.7	3.37	7.46	8.04	12.67	6.19	4.37
Merged-chr1-54569256-1	chr1	54568756	54569756	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11572.0	NM_001163314	241062.0	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	9.15	11.52	7.4	14.84	6.53	9.65	9.51	5.75	5.62
Merged-chr3-154332575-1	chr3	154332075	154333075	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_040387, intron 2 of 2)	intron (NR_040387, intron 2 of 2)	1754.0	NR_040387	99686.0	Mm.38082	NR_040387	ENSMUSG00000093738	AI606473	-	expressed sequence AI606473	ncRNA	5.72	5.07	0.0	5.4	5.6	4.82	8.45	4.86	7.49
Merged-chr4-31964568-1	chr4	31964068	31965068	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_009316, intron 1 of 16)	intron (NM_009316, intron 1 of 16)	461.0	NM_172688	26409.0	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	90.38	97.69	94.35	91.76	69.51	82.79	113.01	63.23	72.45
Merged-chr7-19473109-1	chr7	19472609	19473609	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	B1F|SINE|Alu	-14615.0	NM_172279	232944.0	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	33.18	33.18	43.47	37.78	23.33	37.78	116.18	91.97	52.46
Merged-chr19-37072649-1	chr19	37072149	37073149	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_198300, intron 7 of 10)	intron (NM_198300, intron 7 of 10)	-101194.0	NR_045329	319931.0	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	8.01	4.15	5.55	5.4	9.8	3.22	26.4	19.9	8.12
Merged-chr13-9029819-1	chr13	9029319	9030319	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Lx2|LINE|L1	-33807.0	NM_027000	69237.0	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	9.72	5.07	14.8	9.45	8.86	6.43	6.34	2.21	7.49
Merged-chr10-19004286-1	chr10	19003786	19004786	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001166402, intron 6 of 7)	intron (NM_001166402, intron 6 of 7)	7677.0	NM_001166402	21929.0	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	6.29	3.23	5.55	3.37	1.4	3.22	8.45	0.44	8.12
Merged-chr4-135270105-1	chr4	135269605	135270605	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	2655.0	NM_013885	29876.0	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	16.59	11.98	10.17	5.4	2.8	5.63	5.28	4.86	6.87
Merged-chr2-73274614-1	chr2	73274114	73275114	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_001005343, exon 2 of 2)	3' UTR (NM_001005343, exon 2 of 2)	2688.0	NM_001005343	381373.0	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	1.72	0.0	0.0	3.37	1.4	0.8	5.28	0.44	2.5
Merged-chr14-13237241-1	chr14	13236741	13237741	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_121588, intron 2 of 3)	intron (NR_121588, intron 2 of 3)	47397.0	NR_121589	328354.0	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	2.86	5.07	0.0	3.37	4.2	1.61	2.11	1.33	1.25
Merged-chr14-55147944-1	chr14	55147444	55148444	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31009.0	NM_177049	319984.0	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	25.74	42.39	67.52	32.39	41.05	69.13	35.91	44.22	38.72
Merged-chr8-71205735-1	chr8	71205235	71206235	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_131056, intron 1 of 4)	intron (NR_131056, intron 1 of 4)	1213.0	NR_131056	330796.0	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	29.17	34.1	44.4	22.94	30.32	16.08	34.85	29.63	30.6
Merged-chr9-118668792-1	chr9	118668292	118669292	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_133721, intron 9 of 27)	intron (NM_133721, intron 9 of 27)	-42900.0	NM_001113514	104099.0	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	57.21	57.6	50.87	80.29	41.52	85.2	72.88	68.09	50.59
Merged-chr10-30771210-1	chr10	30770710	30771710	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001358842, intron 2 of 14)	intron (NM_001358842, intron 2 of 14)	32116.0	NM_001358841	211329.0	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	57.78	76.49	58.27	57.35	80.71	77.16	67.6	53.06	39.97
Merged-chr4-34614012-1	chr4	34613512	34614512	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_181406)	promoter-TSS (NM_181406)	930.0	NM_001159563	50793.0	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	14.3	14.28	5.55	12.14	12.13	10.45	11.62	16.8	7.49
Merged-chr10-86107594-1	chr10	86107094	86108094	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_038024, intron 2 of 2)	intron (NR_038024, intron 2 of 2)	11740.0	NR_038024	78170.0	Mm.444790	NR_038024	ENSMUSG00000112493	4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	3.43	5.99	3.7	6.75	1.4	4.82	3.17	6.19	4.37
Merged-chr11-74834837-1	chr11	74834337	74835337	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010813, intron 1 of 5)	intron (NM_010813, intron 1 of 5)	3913.0	NM_010813	17428.0	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	25.74	31.79	19.42	25.64	18.19	27.33	42.25	22.11	24.98
Merged-chr11-96310338-1	chr11	96309838	96310838	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-3428.0	NR_131758	75395.0	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	18.31	24.42	7.4	22.94	15.39	26.53	28.52	31.39	24.36
Merged-chr6-37003395-1	chr6	37002895	37003895	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001347104, intron 19 of 32)	intron (NM_001347104, intron 19 of 32)	-193216.0	NM_008973	19242.0	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	5.72	5.53	1.85	9.45	8.4	1.61	4.22	2.21	3.75
Merged-chr16-30633453-1	chr16	30632953	30633953	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1F|LTR|ERVL-MaLR	33730.0	NM_177632	224093.0	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	6.86	3.69	5.55	4.72	2.8	4.02	3.17	1.77	2.5
Merged-chr18-69407019-1	chr18	69406519	69407519	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001361128, intron 3 of 19)	intron (NM_001361128, intron 3 of 19)	60859.0	NM_001361126	21413.0	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.15	2.3	1.85	6.07	2.33	1.61	4.22	2.65	1.25
Merged-chr1-178527312-1	chr1	178526812	178527812	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	CpG	-1813.0	NM_001161665	269152.0	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	1.14	0.46	3.7	2.7	1.4	1.61	0.0	0.44	2.5
Merged-chr2-129305414-1	chr2	129304914	129305914	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NR_040371, intron 3 of 4)	intron (NR_040371, intron 3 of 4)	4558.0	NM_010554	16175.0	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	138.44	126.25	99.89	94.46	55.05	57.87	124.63	143.7	58.71
Merged-chr17-7320080-1	chr17	7319580	7320580	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-4580.0	NM_011553	21461.0	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	0.57	1.84	1.85	0.0	1.4	1.61	2.11	0.88	1.25
Merged-chr5-103377956-1	chr5	103377456	103378456	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	31358.0	NR_152117	75519.0	Mm.416851	NR_152117	ENSMUSG00000105426	1700021F02Rik	Gm42618	RIKEN cDNA 1700021F02 gene	ncRNA	10.3	3.69	3.7	4.72	3.27	0.0	2.11	6.63	2.5
Merged-chr8-41299553-1	chr8	41299053	41300053	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_023662, intron 22 of 37)	PB1D7|SINE|Alu	59794.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	10.3	17.05	16.65	11.47	4.67	5.63	19.01	15.48	19.36
Merged-chr3-15007131-1	chr3	15006631	15007631	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	RLTR45|LTR|ERVK	35930.0	NR_040550	77127.0	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	4.58	5.53	3.7	8.77	7.93	11.25	5.28	3.1	0.0
Merged-chr6-50221081-1	chr6	50220581	50221581	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_018769, exon 7 of 10)	exon (NM_018769, exon 7 of 10)	40688.0	NM_018769	54722.0	Mm.248361	NM_018769	ENSMUSG00000029821	Gsdme	2310037D07Rik|4932441K13Rik|Dfna5|Dfna5h|EG14210|Fin15	gasdermin E	protein-coding	0.57	1.84	0.0	4.72	0.93	0.0	0.0	3.98	2.5
Merged-chr3-9082532-1	chr3	9082032	9083032	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	20568.0	NR_040597	75149.0	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	9.15	2.76	7.4	6.75	7.46	9.65	11.62	4.42	5.0
Merged-chr8-84570577-1	chr8	84570077	84571077	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001252060, intron 22 of 47)	intron (NM_001252060, intron 22 of 47)	92275.0	NM_010499	15936.0	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	3.43	2.3	1.85	3.37	2.33	1.61	1.06	0.0	6.25
Merged-chr16-30062699-1	chr16	30062199	30063199	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-2658.0	NM_008235	15205.0	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	21.17	22.58	19.42	18.22	14.93	21.7	32.74	26.53	13.12
Merged-chr10-93768349-1	chr10	93767849	93768849	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2a|LINE|L2	-63206.0	NM_001206851	327799.0	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	8.01	1.38	1.85	5.4	2.33	4.82	1.06	2.65	4.37
Merged-chr1-165761684-1	chr1	165761184	165762184	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2074.0	NR_149310	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	23.45	29.95	24.97	22.27	16.79	42.6	31.69	28.74	22.48
Merged-chr6-97853638-1	chr6	97853138	97854138	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001113198, intron 1 of 9)	intron (NM_001113198, intron 1 of 9)	46580.0	NM_001113198	17342.0	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	5.15	23.96	11.1	18.22	10.26	17.68	13.73	18.13	16.24
Merged-chr2-131096659-1	chr2	131096159	131097159	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MIR|SINE|MIR	-9894.0	NM_011426	20612.0	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	16.02	9.68	12.95	16.19	16.79	12.86	21.12	11.05	14.99
Merged-chr13-34154426-1	chr13	34153926	34154926	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-8538.0	NM_001101430	69666.0	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	8.01	8.29	1.85	3.37	3.73	1.61	5.28	7.96	9.99
Merged-chr16-75876156-1	chr16	75875656	75876656	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023380, intron 5 of 7)	intron (NM_023380, intron 5 of 7)	33110.0	NM_023380	67742.0	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	37.18	46.54	43.47	33.06	22.39	41.8	21.12	22.99	21.23
Merged-chr1-165764769-1	chr1	165764269	165765269	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_149310, intron 2 of 4)	MIRb|SINE|MIR	1011.0	NM_011804	433375.0	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	225.96	241.91	157.24	215.91	213.19	185.68	207.01	277.24	131.78
Merged-chr2-91279141-1	chr2	91278641	91279641	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175123, intron 8 of 8)	intron (NM_175123, intron 8 of 8)	14026.0	NM_023854	77038.0	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	4.58	5.07	1.85	4.72	4.67	2.41	4.22	9.73	6.25
Merged-chr15-66815589-1	chr15	66815089	66816089	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009192, intron 1 of 8)	intron (NM_009192, intron 1 of 8)	16240.0	NM_001029841	20491.0	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	64.64	109.21	68.45	99.86	74.64	76.36	42.25	59.69	56.21
Merged-chr19-43880402-1	chr19	43879902	43880902	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	-634.0	NM_001306088	71972.0	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.72	7.83	5.55	13.49	7.93	11.25	3.17	3.54	3.75
Merged-chr1-184173929-1	chr1	184173429	184174429	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	139548.0	NM_022019	63953.0	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	28.6	18.43	6.47	19.57	21.93	14.47	9.51	13.27	11.87
Merged-chr5-64268009-1	chr5	64267509	64268509	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001289514, intron 5 of 18)	intron (NM_001289514, intron 5 of 18)	37652.0	NM_001289514	57915.0	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.58	5.99	7.4	15.52	14.0	22.51	21.12	21.22	20.61
Merged-chr11-59223036-1	chr11	59222536	59223536	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	5126.0	NM_001130408	11840.0	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	42.33	47.92	35.15	38.46	36.85	49.03	54.92	56.16	28.73
Merged-chr2-150845928-1	chr2	150845428	150846428	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_151505, intron 4 of 12)	intron (NR_151505, intron 4 of 12)	-3358.0	NM_001356550	76192.0	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	53.77	64.97	56.42	49.93	63.45	67.52	49.64	43.77	39.35
Merged-chr1-37154327-1	chr1	37153827	37154827	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-63951.0	NM_001282010	12790.0	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	2.86	5.53	1.85	11.47	7.93	1.61	8.45	4.42	1.25
Merged-chr9-104277742-1	chr9	104277242	104278242	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-14812.0	NM_001163026	235567.0	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	4.58	3.69	3.7	8.1	5.13	5.63	10.56	3.98	6.25
Merged-chr11-54106512-1	chr11	54106012	54107012	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001136076, intron 2 of 15)	intron (NM_001136076, intron 2 of 15)	5588.0	NM_011031	18452.0	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	5.72	3.69	0.0	8.77	4.2	3.22	9.51	1.33	1.25
Merged-chr2-59127898-1	chr2	59127398	59128398	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001362394, intron 1 of 13)	intron (NM_001362394, intron 1 of 13)	32785.0	NM_001362393	227933.0	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09|Gm38473	coiled-coil domain containing 148	protein-coding	10.3	10.6	12.95	14.17	7.0	9.65	13.73	14.59	8.74
Merged-chr19-5041769-1	chr19	5041269	5042269	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_175383)	TTS (NM_175383)	415.0	NM_134155	107392.0	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	140.15	142.38	82.32	100.53	73.71	143.88	96.11	91.53	84.31
Merged-chr1-134067313-1	chr1	134066813	134067813	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	11842.0	NM_007570	12227.0	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	13.16	8.75	3.7	7.42	6.53	18.49	11.62	10.17	7.49
Merged-chr11-54439234-1	chr11	54438734	54439734	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173753, intron 1 of 17)	intron (NM_173753, intron 1 of 17)	1055.0	NM_173753	216742.0	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	334.08	347.43	174.82	371.77	296.7	179.24	330.59	383.36	141.77
Merged-chr7-118297826-1	chr7	118297326	118298326	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	53919.0	NR_027879	67745.0	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	5.15	5.07	0.92	0.67	2.8	4.82	2.11	1.77	0.0
Merged-chr12-73318265-1	chr12	73317765	73318765	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001037717, intron 4 of 15)	MER102c|DNA|hAT-Charlie	31417.0	NM_001037717	625098.0	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	3.43	7.37	5.55	7.42	4.67	3.22	6.34	1.33	1.25
Merged-chr16-36661826-1	chr16	36661326	36662326	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_019388, intron 1 of 7)	MLT1C|LTR|ERVL-MaLR	4251.0	NM_019388	12524.0	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	38.33	28.11	12.95	33.06	16.33	17.68	24.29	25.2	26.85
Merged-chr18-84681501-1	chr18	84681001	84682001	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_023149, intron 2 of 11)	intron (NM_023149, intron 2 of 11)	558.0	NM_001289531	66054.0	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	226.53	284.76	172.97	260.44	291.57	169.6	294.68	359.48	156.76
Merged-chr11-76642425-1	chr11	76641925	76642925	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	ORR1B2|LTR|ERVL-MaLR	-30045.0	NM_177182	320522.0	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	3.43	4.15	7.4	4.72	0.93	3.22	3.17	4.86	3.75
Merged-chr13-59667957-2	chr13	59667462	59668462	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr|./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001035122, intron 1 of 9)	MTD|LTR|ERVL-MaLR	7822.0	NM_001035122	105348.0	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	10.3	19.35	13.87	5.4	6.53	13.66	9.51	9.73	7.49
Merged-chr16-91731959-1	chr16	91731459	91732459	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001110276, intron 1 of 15)	intron (NM_001110276, intron 1 of 15)	2588.0	NM_010587	16443.0	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	35.47	43.31	46.25	69.5	44.78	47.42	72.88	64.56	44.34
Merged-chr16-30940146-1	chr16	30939646	30940646	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	141286.0	NM_198626	268880.0	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	13.73	13.36	9.25	15.52	6.06	11.25	14.79	6.19	8.12
Merged-chr6-4686196-1	chr6	4685696	4686696	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001130188, intron 10 of 11)	intron (NM_001130188, intron 10 of 11)	61008.0	NM_001130188	20392.0	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	3.43	5.07	1.85	3.37	4.2	4.82	7.39	4.86	0.0
Merged-chr1-12990457-1	chr1	12989957	12990957	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_172841, exon 1 of 9)	exon (NM_172841, exon 1 of 9)	678.0	NM_172841	240726.0	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.57	0.92	5.55	4.05	3.73	6.43	2.11	0.0	5.62
Merged-chr2-44978690-1	chr2	44978190	44979190	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	44487.0	NR_039591	100628598.0		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.15	6.91	5.55	6.75	7.46	4.82	2.11	1.33	5.62
Merged-chr6-120666596-1	chr6	120666096	120667096	+	541.0	./atac_peak_files/aj_kupffer_control_young.idr	exon (NM_001128151, exon 1 of 19)	exon (NM_001128151, exon 1 of 19)	175.0	NM_001128151	330409.0	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	CECR2, histone acetyl-lysine reader	protein-coding	2.86	0.0	2.77	2.7	1.4	6.43	1.06	0.88	2.5
Merged-chr4-150092551-1	chr4	150092051	150093051	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177366, intron 1 of 3)	intron (NM_177366, intron 1 of 3)	5048.0	NM_177366	269604.0	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	5.72	2.3	0.0	6.75	4.67	3.22	7.39	4.86	3.75
Merged-chr17-87206570-1	chr17	87206070	87207070	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	MamRep605|LTR?|LTR?	-11628.0	NR_046016	399626.0	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	1.72	0.92	0.0	1.35	2.8	4.82	1.06	1.33	6.25
Merged-chr6-72098846-1	chr6	72098346	72099346	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_011375, intron 1 of 6)	intron (NM_011375, intron 1 of 6)	1238.0	NM_011375	20454.0	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	62.93	110.13	87.87	87.04	139.49	94.85	157.37	173.33	58.71
Merged-chr14-74909239-1	chr14	74908739	74909739	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	38638.0	NM_001252132	380916.0	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	7.44	11.06	11.1	12.14	14.0	15.27	6.34	11.94	12.49
Merged-chr8-25774938-1	chr8	25774438	25775438	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026121, intron 2 of 4)	RSINE1|SINE|B4	10271.0	NM_026121	67384.0	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	5.72	5.07	7.4	6.07	1.4	1.61	1.06	2.65	2.5
Merged-chr12-8508472-1	chr12	8507972	8508972	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	RLTR28|LTR|ERVL	-8463.0	NM_007483	11852.0	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.0	3.69	1.85	5.4	5.13	14.47	27.46	37.58	20.61
Merged-chr2-24048825-1	chr2	24048325	24049325	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	5' UTR (NM_080462, exon 2 of 7)	5' UTR (NM_080462, exon 2 of 7)	554.0	NM_080462	140483.0	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	29.75	48.38	11.1	45.88	53.65	54.66	22.18	28.3	14.99
Merged-chr11-32608441-1	chr11	32607941	32608941	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009288, intron 12 of 18)	intron (NM_009288, intron 12 of 18)	-34114.0	NM_001271348	103583.0	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	3.43	7.83	12.95	8.1	9.33	15.27	10.56	5.31	6.87
Merged-chr14-55091881-1	chr14	55091381	55092381	+	541.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039198, intron 1 of 9)	intron (NM_001039198, intron 1 of 9)	167.0	NM_001039198	239102.0	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	60.07	48.84	22.2	70.17	47.12	41.8	59.15	53.06	34.35
Merged-chr4-119204920-1	chr4	119204420	119205420	+	541.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	TTS (NM_029198)	TTS (NM_029198)	9395.0	NM_001038998	69216.0	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	1.72	1.38	0.0	1.35	1.4	3.22	2.11	2.65	3.75
Merged-chr10-117709444-1	chr10	117708944	117709944	+	540.5	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001288586, intron 2 of 10)	intron (NM_001288586, intron 2 of 10)	1314.0	NM_010786	17246.0	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	57.78	58.52	46.25	54.65	48.05	49.03	67.6	80.92	41.22
Merged-chr3-129724185-1	chr3	129723685	129724685	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_010113, intron 6 of 23)	intron (NM_010113, intron 6 of 23)	901.0	NM_001310737	13645.0	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	15.45	13.82	14.8	20.24	7.93	21.7	13.73	7.52	5.0
Merged-chr4-134497524-1	chr4	134497024	134498024	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001285849, intron 1 of 2)	intron (NM_001285849, intron 1 of 2)	483.0	NM_001285849	71904.0	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	51.48	45.62	29.6	68.15	39.65	67.52	54.92	54.83	19.98
Merged-chr19-57138109-1	chr19	57137609	57138609	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001103177, intron 4 of 21)	intron (NM_001103177, intron 4 of 21)	-19085.0	NM_001103178	226251.0	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.0	2.3	7.4	1.35	3.73	0.8	1.06	1.33	1.25
Merged-chr11-80181575-1	chr11	80181075	80182075	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B2_Mm2|SINE|B2	-2297.0	NM_028019	71956.0	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	26.89	23.96	37.0	14.17	14.93	16.08	22.18	11.94	13.12
Merged-chr15-94539679-1	chr15	94539179	94540179	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_172437, intron 2 of 8)	(GA)n|Simple_repeat|Simple_repeat	3828.0	NM_172437	78895.0	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	13.16	13.82	7.4	31.04	14.93	24.11	31.69	19.01	22.48
Merged-chr4-132895589-1	chr4	132895089	132896089	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	-11131.0	NM_133887	100226.0	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	4.58	4.15	4.62	5.4	3.73	0.8	11.62	13.27	6.87
Merged-chr11-71224910-1	chr11	71224410	71225410	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001040696, intron 2 of 14)	Lx6|LINE|L1	5823.0	NM_001040696	637515.0	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	Nalp1b	NLR family, pyrin domain containing 1B	protein-coding	7.44	5.53	3.7	0.0	0.0	0.0	6.34	3.1	1.25
Merged-chr6-149323993-1	chr6	149323493	149324493	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026054, intron 2 of 4)	intron (NM_026054, intron 2 of 4)	14579.0	NM_001289662	67246.0	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	7.44	5.99	10.17	10.12	5.6	11.25	7.39	12.38	7.49
Merged-chr6-118302941-1	chr6	118302441	118303441	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_110507, intron 4 of 5)	intron (NR_110507, intron 4 of 5)	5778.0	NR_110507	102632423.0	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	4.0	5.07	0.0	6.75	4.67	3.22	2.11	3.1	1.25
Merged-chr9-66511119-1	chr9	66510619	66511619	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	3' UTR (NM_175206, exon 2 of 2)	3' UTR (NM_175206, exon 2 of 2)	3474.0	NM_175206	74165.0	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	30.32	42.85	57.35	52.63	48.05	44.21	59.15	51.29	29.98
Merged-chr16-25967516-1	chr16	25967016	25968016	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_173379, intron 13 of 14)	intron (NM_173379, intron 13 of 14)	138268.0	NM_173379	210530.0	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.0	5.07	1.85	4.72	2.8	8.04	1.06	1.77	6.25
Merged-chr9-60478826-1	chr9	60478326	60479326	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	32209.0	NM_001040426	207596.0	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	2.29	0.46	0.0	10.12	4.2	12.06	4.22	5.75	3.75
Merged-chr10-117471790-1	chr10	117471290	117472290	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-24355.0	NR_152734	102634600.0	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	3.43	2.3	4.62	2.7	5.13	3.22	2.11	2.65	2.5
Merged-chr7-80095826-1	chr7	80095326	80096326	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_173011, exon 9 of 11)	exon (NM_173011, exon 9 of 11)	19524.0	NM_173011	269951.0	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	6.86	5.99	3.7	7.42	1.87	8.04	7.39	5.31	10.62
Merged-chr9-25571574-1	chr9	25571074	25572074	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_026189, intron 3 of 7)	intron (NM_026189, intron 3 of 7)	89977.0	NM_026189	67484.0	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	20.02	24.42	18.5	37.11	24.72	11.25	16.9	15.03	5.62
Merged-chr8-70301056-1	chr8	70300556	70301556	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	exon (NM_001024922, exon 2 of 13)	exon (NM_001024922, exon 2 of 13)	1396.0	NM_001024922	234374.0	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	6.29	2.3	14.8	8.77	3.73	4.82	1.06	5.31	2.5
Merged-chr5-66385804-1	chr5	66385304	66386304	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001310626, intron 8 of 15)	MLT1H|LTR|ERVL-MaLR	-48139.0	NM_001201416	11787.0	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	1.72	3.23	0.0	4.05	2.33	5.63	1.06	2.21	1.25
Merged-chrX-7862587-1	chrX	7862087	7863087	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001290537, intron 3 of 9)	intron (NM_001290537, intron 3 of 9)	-15719.0	NM_138606	18715.0	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	13.73	10.6	13.87	4.72	8.4	13.66	6.34	6.63	8.74
Merged-chr10-66831489-1	chr10	66830989	66831989	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	88895.0	NR_138560	68488.0	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	2.29	3.23	9.25	7.42	2.33	1.61	2.11	2.65	2.5
Merged-chr14-30217201-1	chr14	30216701	30217701	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001083616, intron 3 of 46)	intron (NM_001083616, intron 3 of 46)	136285.0	NM_001302637	12289.0	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	13.73	12.44	16.65	15.52	13.53	10.45	10.56	9.29	14.99
Merged-chr2-155787103-1	chr2	155786603	155787603	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010808, intron 1 of 8)	MTD|LTR|ERVL-MaLR	11761.0	NM_010808	17391.0	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	5.72	3.23	0.0	2.02	1.87	2.41	5.28	4.42	0.0
Merged-chr4-34883727-1	chr4	34883227	34884227	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_013889)	promoter-TSS (NM_013889)	-779.0	NM_013889	30046.0	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	48.62	47.0	24.97	56.68	41.99	25.72	47.53	26.09	19.98
Merged-chr1-140180895-1	chr1	140180395	140181395	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009888, intron 1 of 21)	intron (NM_009888, intron 1 of 21)	2516.0	NM_009888	12628.0	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	17.73	16.59	18.5	19.57	10.73	32.96	22.18	20.34	28.73
Merged-chr2-61734404-1	chr2	61733904	61734904	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_021526, intron 3 of 11)	intron (NM_021526, intron 3 of 11)	22710.0	NM_021526	59029.0	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	6.86	5.07	3.7	8.77	11.2	6.43	5.28	2.65	6.25
Merged-chr16-21996841-1	chr16	21996341	21997341	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1299.0	NM_001289581	239759.0	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	24.03	14.75	17.57	37.78	33.59	31.35	16.9	12.38	19.98
Merged-chr7-121734295-1	chr7	121733795	121734795	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_011326)	promoter-TSS (NM_011326)	-184.0	NM_011326	20278.0	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	1.72	2.76	2.77	2.02	2.8	3.22	1.06	0.0	2.5
Merged-chr2-52425764-1	chr2	52425264	52426264	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_182994)	promoter-TSS (NM_182994)	-890.0	NM_182994	75423.0	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	41.19	64.97	45.32	47.23	47.12	56.27	55.98	80.03	46.84
Merged-chr3-52048297-1	chr3	52047797	52048797	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	56709.0	NM_001004176	433586.0	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	12.01	11.06	9.25	11.47	10.73	20.09	11.62	3.98	4.37
Merged-chr9-45252201-1	chr9	45251701	45252701	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	Intergenic	14506.0	NR_106054	102466803.0		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	227.11	184.77	191.47	200.39	147.42	190.5	200.68	193.23	181.11
Merged-chr12-11979842-1	chr12	11979342	11980342	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-96943.0	NR_003964	627110.0	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	1.72	1.38	1.85	1.35	2.33	2.41	5.28	2.21	5.0
Merged-chr11-68853826-1	chr11	68853326	68854326	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_023668)	promoter-TSS (NM_023668)	-695.0	NM_023668	83431.0	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	183.63	186.16	93.42	143.71	160.01	141.47	143.64	202.07	121.16
Merged-chr3-87501254-1	chr3	87500754	87501754	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_001113238)	TTS (NM_001113238)	-24324.0	NM_001083318	27049.0	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	7.44	6.91	3.7	5.4	4.67	6.43	2.11	0.44	2.5
Merged-chr9-97020378-1	chr9	97019878	97020878	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	Intergenic	B3|SINE|B2	-2023.0	NM_145134	211949.0	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	3.43	2.76	1.85	4.72	3.27	1.61	5.28	3.1	5.0
Merged-chr2-57356366-1	chr2	57355866	57356866	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_010274, intron 11 of 16)	intron (NM_010274, intron 11 of 16)	117984.0	NM_010274	14571.0	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	2.29	1.84	0.0	6.07	1.4	0.0	2.11	1.33	1.25
Merged-chr4-62396013-1	chr4	62395513	62396513	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_139291, intron 3 of 3)	RLTR19-int|LTR|ERVK	12610.0	NM_139291	66440.0	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	4.0	10.6	5.55	8.1	12.13	14.47	12.67	9.73	5.0
Merged-chr10-80401136-1	chr10	80400636	80401636	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1605.0	NM_001306143	17192.0	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	21.74	23.5	38.85	28.34	14.93	65.11	44.36	38.03	37.47
Merged-chr13-112635379-1	chr13	112634879	112635879	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001145885, intron 5 of 21)	intron (NM_001145885, intron 5 of 21)	16931.0	NM_010029	13206.0	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	2.86	3.69	3.7	0.67	2.33	8.84	1.06	4.86	3.75
Merged-chr10-78096804-1	chr10	78096304	78097304	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	27436.0	NM_015790	50723.0	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	10.3	10.6	5.55	8.1	11.2	9.65	11.62	12.38	23.11
Merged-chr16-4685353-1	chr16	4684853	4685853	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001135112, intron 1 of 10)	intron (NM_001135112, intron 1 of 10)	1283.0	NM_001135112	83945.0	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	23.45	26.26	12.95	16.19	9.8	11.25	30.63	35.82	16.24
Merged-chr7-35030545-1	chr7	35030045	35031045	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_008820, intron 11 of 14)	intron (NM_008820, intron 11 of 14)	26021.0	NM_009884	12611.0	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	14.87	11.98	13.87	18.22	11.66	9.65	10.56	11.94	21.23
Merged-chr11-121685982-1	chr11	121685482	121686482	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-12831.0	NM_178664	210004.0	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	6.86	5.53	7.4	6.75	6.53	1.61	6.34	4.86	11.24
Merged-chr8-83091549-1	chr8	83091049	83092049	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	TTS (NM_177378)	TTS (NM_177378)	-73803.0	NM_001111304	71310.0	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	11.44	11.52	8.32	19.57	6.53	5.63	5.28	1.77	6.25
Merged-chr8-125489625-1	chr8	125489125	125490125	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001357372, intron 3 of 21)	intron (NM_001357372, intron 3 of 21)	3208.0	NM_001081337	244668.0	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	25.17	31.79	52.72	33.74	27.52	49.03	25.35	17.24	14.99
Merged-chr18-11807633-1	chr18	11807133	11808133	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-31641.0	NM_001146287	63955.0	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.0	5.07	11.1	2.7	1.4	4.82	6.34	2.21	2.5
Merged-chr3-123168964-1	chr3	123168464	123169464	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_080451, intron 1 of 4)	intron (NM_080451, intron 1 of 4)	67185.0	NM_080451	118449.0	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	1.72	4.61	0.0	2.7	1.4	1.61	4.22	1.77	3.75
Merged-chr1-87042147-1	chr1	87041647	87042647	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001172157, intron 15 of 21)	intron (NM_001172157, intron 15 of 21)	47781.0	NM_007433	11650.0	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.57	2.76	1.85	5.4	4.67	2.41	4.22	1.33	3.75
Merged-chr4-14865206-1	chr4	14864706	14865706	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028264, intron 1 of 6)	intron (NM_028264, intron 1 of 6)	987.0	NM_028264	72519.0	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360|Pip4p2	transmembrane protein 55A	protein-coding	85.24	67.27	70.3	85.01	72.78	61.09	78.16	80.92	39.97
Merged-chr13-102888572-1	chr13	102888072	102889072	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	128317.0	NR_130171	76624.0	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	38.9	49.76	45.32	29.01	19.13	26.53	63.37	34.93	29.98
Merged-chr11-54988132-1	chr11	54987632	54988632	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NR_138556, intron 19 of 24)	B3A|SINE|B2	-25192.0	NM_001271455	57783.0	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	10.3	10.14	12.02	12.14	9.8	24.11	22.18	43.77	12.49
Merged-chr2-119156553-1	chr2	119156053	119157053	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001033136, intron 1 of 12)	CpG	481.0	NM_001033136	67809.0	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	192.78	194.45	182.22	171.38	139.02	110.12	163.71	199.86	96.8
Merged-chrX-151519582-1	chrX	151519082	151520082	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-1090.0	NM_177201	320595.0	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	24.6	32.25	12.95	31.71	29.86	29.74	29.57	27.41	27.48
Merged-chr11-67112906-1	chr11	67112406	67113406	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	non-coding (NR_038055, exon 5 of 5)	non-coding (NR_038055, exon 5 of 5)	7174.0	NR_038055	74184.0	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	5.72	2.76	1.85	2.02	2.8	2.41	3.17	1.33	0.0
Merged-chr16-10769045-1	chr16	10768545	10769545	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	16491.0	NM_009896	12703.0	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	2.86	2.76	5.55	4.05	1.4	1.61	2.11	1.77	0.0
Merged-chr11-118739062-1	chr11	118738562	118739562	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001024931, intron 2 of 14)	intron (NM_001024931, intron 2 of 14)	21979.0	NM_001285438	52897.0	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	8.01	3.23	1.85	4.05	2.33	4.02	4.22	6.19	1.25
Merged-chr4-101689824-1	chr4	101689324	101690324	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-27583.0	NM_001122899	16847.0	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	13.16	7.83	11.1	9.45	7.46	20.9	4.22	2.21	9.99
Merged-chr7-127016145-1	chr7	127015645	127016645	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_030240, intron 2 of 2)	intron (NM_030240, intron 2 of 2)	1207.0	NM_030240	67278.0	Mm.345385	NM_030240	ENSMUSG00000107068	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	35.47	45.62	38.85	24.96	30.79	65.91	46.47	37.14	34.35
Merged-chr1-119522837-1	chr1	119522337	119523337	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L2b|LINE|L2	-3317.0	NM_146103	226351.0	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	4.0	3.23	3.7	0.67	0.0	4.82	1.06	2.21	3.12
Merged-chr8-4115477-1	chr8	4114977	4115977	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	L1M4|LINE|L1	-9713.0	NM_026956	69142.0	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	5.72	9.68	3.7	6.75	5.6	11.25	2.11	4.86	3.12
Merged-chr15-3356547-1	chr15	3356047	3357047	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001048178, intron 3 of 8)	intron (NM_001048178, intron 3 of 8)	-53021.0	NM_001357801	100039139.0	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	-	coiled-coil domain containing 152	protein-coding	2.29	2.76	5.55	2.02	1.4	3.22	2.11	3.54	4.37
Merged-chr5-24578318-1	chr5	24577818	24578818	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-851.0	NM_001190443	27407.0	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	44.05	63.59	79.55	66.12	67.64	75.56	118.29	110.1	77.44
Merged-chr5-140225308-1	chr5	140224808	140225808	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NR_152617, intron 10 of 16)	intron (NR_152617, intron 10 of 16)	-50390.0	NM_001359027	17120.0	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.29	3.23	3.7	10.8	1.4	1.61	3.17	3.1	3.75
Merged-chr2-104002934-1	chr2	104002434	104003434	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_175161, intron 3 of 4)	intron (NM_175161, intron 3 of 4)	-24865.0	NM_020593	57443.0	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	6.29	0.46	3.7	0.67	1.87	3.22	0.0	0.88	6.87
Merged-chr8-44941707-1	chr8	44941207	44942207	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-8501.0	NM_001081286	14107.0	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	2.29	0.46	5.55	2.02	4.2	3.22	3.17	0.0	5.0
Merged-chr4-11559450-1	chr4	11558950	11559950	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_001039556, intron 1 of 14)	intron (NM_001039556, intron 1 of 14)	530.0	NM_001256145	623474.0	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	9.72	6.91	8.32	6.75	6.06	7.23	19.01	4.86	6.25
Merged-chr11-110464591-1	chr11	110464091	110465091	+	540.0	./atac_peak_files/c57bl6j_kupffer_control_young.idr	intron (NM_001356352, intron 1 of 11)	intron (NM_001356352, intron 1 of 11)	-13924.0	NM_001356347	26399.0	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	4.58	4.61	13.87	14.17	11.2	10.45	28.52	16.8	16.24
Merged-chr5-146905977-1	chr5	146905477	146906477	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-42680.0	NM_025652	66596.0	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	4.0	3.69	1.85	4.05	2.33	0.0	7.39	4.42	4.37
Merged-chr19-4190984-1	chr19	4190484	4191484	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	promoter-TSS (NM_178650)	promoter-TSS (NM_178650)	63.0	NM_178650	108995.0	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	16.02	6.45	9.25	13.49	10.26	7.23	10.56	6.63	5.62
Merged-chr4-43322714-1	chr4	43322214	43323214	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_177195, intron 11 of 28)	intron (NM_177195, intron 11 of 28)	55555.0	NM_177195	320571.0	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	4.0	1.38	5.55	3.37	6.06	0.0	2.11	0.0	2.5
Merged-chr14-70647226-1	chr14	70646726	70647726	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	TTS (NM_181345)	TTS (NM_181345)	-4958.0	NM_008004	14171.0	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	1.72	2.76	5.55	3.37	0.47	3.22	1.06	3.54	0.0
Merged-chr17-31576841-1	chr17	31576341	31577341	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_016670, intron 1 of 10)	ORR1F-int|LTR|ERVL-MaLR	12068.0	NM_016670	18771.0	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	14.3	12.9	14.8	16.87	10.73	18.49	12.67	13.27	11.24
Merged-chr4-136449168-1	chr4	136448668	136449668	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20593.0	NM_024452	269593.0	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	33.75	29.49	20.35	55.33	43.85	17.68	9.51	6.19	5.0
Merged-chr8-41235786-1	chr8	41235286	41236286	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Lx4A|LINE|L1	-3973.0	NM_023662	18536.0	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	2.29	2.76	3.7	4.72	1.4	4.82	2.11	1.77	1.87
Merged-chr14-21993876-1	chr14	21993376	21994376	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	Intergenic	Intergenic	-4275.0	NM_145459	218820.0	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	5.15	5.07	1.85	2.7	1.87	3.22	5.28	4.42	3.75
Merged-chr10-111507858-1	chr10	111507358	111508358	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_009344, intron 1 of 1)	intron (NM_009344, intron 1 of 1)	1572.0	NM_009344	21664.0	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	7.44	3.69	3.7	12.14	1.4	2.41	5.28	2.65	3.12
Merged-chr6-131003518-1	chr6	131003018	131004018	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	243844.0	NM_001170851	16633.0	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	2.86	1.84	1.85	4.72	1.87	5.63	1.06	7.96	0.62
Merged-chr9-44483961-1	chr9	44483461	44484461	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_001357490, intron 1 of 7)	intron (NM_001357490, intron 1 of 7)	1136.0	NM_001357490	80288.0	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	5.15	8.75	18.5	18.89	8.86	10.45	14.79	15.03	11.87
Merged-chr6-122821961-1	chr6	122821461	122822461	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	1777.0	NM_021899	60611.0	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	17.16	23.96	8.32	31.71	26.59	16.08	35.91	38.91	20.61
Merged-chr14-55541005-1	chr14	55540505	55541505	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	intron (NM_028994, intron 1 of 9)	intron (NM_028994, intron 1 of 9)	739.0	NM_028994	74551.0	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	14.87	11.98	9.25	14.17	10.26	20.9	17.96	16.8	15.61
Merged-chr2-27657036-1	chr2	27656536	27657536	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	-20165.0	NM_011305	20181.0	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	4.0	5.07	0.0	1.35	3.73	7.23	2.11	1.33	0.0
Merged-chr15-101309063-1	chr15	101308563	101309563	+	540.0	./atac_peak_files/balbcj_kupffer_control_young.idr	Intergenic	Intergenic	15851.0	NR_033803	77717.0	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	6.86	4.61	2.77	5.4	4.2	8.04	6.34	2.21	6.25
Merged-chr16-10990598-1	chr16	10990098	10991098	+	540.0	./atac_peak_files/aj_kupffer_control_young.idr	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	2523.0	NM_019980	56722.0	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	80.09	81.56	53.65	85.01	41.99	69.93	83.44	81.8	53.08